Query 017194
Match_columns 375
No_of_seqs 696 out of 1557
Neff 12.1
Searched_HMMs 46136
Date Fri Mar 29 06:26:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017194.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017194hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0271 Notchless-like WD40 re 100.0 2.5E-61 5.5E-66 371.3 28.2 335 7-373 107-479 (480)
2 KOG0272 U4/U6 small nuclear ri 100.0 1.7E-54 3.7E-59 337.5 23.9 284 13-373 173-458 (459)
3 KOG0286 G-protein beta subunit 100.0 1.8E-50 4E-55 300.8 30.0 294 6-373 46-343 (343)
4 KOG0315 G-protein beta subunit 100.0 4.1E-49 8.8E-54 287.2 26.7 279 28-375 10-288 (311)
5 KOG0279 G protein beta subunit 100.0 8.9E-48 1.9E-52 284.6 31.1 305 1-374 1-312 (315)
6 KOG0271 Notchless-like WD40 re 100.0 1.5E-48 3.2E-53 301.0 24.4 287 51-375 108-439 (480)
7 KOG0272 U4/U6 small nuclear ri 100.0 8.2E-49 1.8E-53 305.8 20.3 252 4-321 206-458 (459)
8 KOG0295 WD40 repeat-containing 100.0 4.8E-47 1E-51 290.6 24.7 297 6-373 99-404 (406)
9 KOG0318 WD40 repeat stress pro 100.0 3.9E-45 8.6E-50 293.0 34.5 351 2-375 134-602 (603)
10 KOG0282 mRNA splicing factor [ 100.0 4.6E-47 9.9E-52 301.0 18.2 295 6-373 205-503 (503)
11 KOG0285 Pleiotropic regulator 100.0 5E-45 1.1E-49 279.2 26.9 298 4-373 140-437 (460)
12 KOG0284 Polyadenylation factor 100.0 1.5E-46 3.3E-51 291.9 18.5 282 15-373 96-378 (464)
13 KOG0645 WD40 repeat protein [G 100.0 1.2E-43 2.5E-48 261.8 32.6 297 5-375 4-311 (312)
14 KOG0279 G protein beta subunit 100.0 3.6E-44 7.8E-49 265.6 26.9 262 3-324 51-314 (315)
15 KOG0296 Angio-associated migra 100.0 4.4E-43 9.6E-48 269.0 30.0 330 7-375 56-398 (399)
16 KOG0265 U5 snRNP-specific prot 100.0 1.7E-43 3.7E-48 264.6 25.8 294 6-374 38-337 (338)
17 KOG0293 WD40 repeat-containing 100.0 5.7E-44 1.2E-48 278.3 24.2 295 4-374 213-512 (519)
18 KOG0319 WD40-repeat-containing 100.0 3.1E-43 6.8E-48 292.8 28.4 340 4-375 93-577 (775)
19 KOG0273 Beta-transducin family 100.0 3.5E-43 7.5E-48 278.2 26.2 290 9-375 173-482 (524)
20 cd00200 WD40 WD40 domain, foun 100.0 9.7E-42 2.1E-46 281.1 34.9 288 8-373 2-289 (289)
21 KOG0273 Beta-transducin family 100.0 1.8E-42 4E-47 274.0 28.6 284 16-374 236-522 (524)
22 KOG0266 WD40 repeat-containing 100.0 6.7E-42 1.5E-46 294.0 32.7 289 10-374 153-453 (456)
23 KOG0318 WD40 repeat stress pro 100.0 7.7E-41 1.7E-45 268.4 35.7 349 6-375 50-560 (603)
24 KOG0291 WD40-repeat-containing 100.0 1.9E-41 4E-46 283.0 33.1 333 8-375 138-550 (893)
25 KOG0281 Beta-TrCP (transducin 100.0 2.8E-43 6.2E-48 269.0 17.6 278 14-374 196-476 (499)
26 KOG0315 G-protein beta subunit 100.0 4.3E-41 9.4E-46 245.4 28.1 280 3-353 28-309 (311)
27 KOG0286 G-protein beta subunit 100.0 4.7E-41 1E-45 250.7 27.3 251 4-321 86-343 (343)
28 KOG0263 Transcription initiati 100.0 6.4E-42 1.4E-46 287.5 25.1 250 52-375 372-649 (707)
29 KOG0316 Conserved WD40 repeat- 100.0 2.7E-41 6E-46 244.5 24.4 287 5-372 7-296 (307)
30 KOG0276 Vesicle coat complex C 100.0 3.2E-41 7E-46 276.1 27.0 291 6-371 4-295 (794)
31 KOG0263 Transcription initiati 100.0 1.8E-41 3.8E-46 284.8 25.3 276 11-354 374-695 (707)
32 KOG0313 Microtubule binding pr 100.0 1E-40 2.2E-45 257.3 26.2 284 14-373 104-416 (423)
33 KOG0319 WD40-repeat-containing 100.0 8.1E-41 1.8E-45 278.5 27.4 295 4-373 312-617 (775)
34 KOG0277 Peroxisomal targeting 100.0 9.4E-40 2E-44 239.1 25.0 285 19-373 12-307 (311)
35 PLN00181 protein SPA1-RELATED; 100.0 2.4E-38 5.2E-43 292.0 37.6 298 11-374 479-792 (793)
36 KOG0306 WD40-repeat-containing 100.0 6.3E-39 1.4E-43 267.9 28.3 327 6-373 98-620 (888)
37 KOG0275 Conserved WD40 repeat- 100.0 3.3E-40 7.2E-45 250.3 17.6 286 13-373 211-507 (508)
38 KOG0643 Translation initiation 100.0 3E-38 6.6E-43 232.9 27.3 296 9-374 4-316 (327)
39 KOG0284 Polyadenylation factor 100.0 1.7E-40 3.6E-45 258.5 15.7 249 10-325 133-382 (464)
40 KOG0278 Serine/threonine kinas 100.0 9.6E-40 2.1E-44 238.6 18.0 289 6-374 5-296 (334)
41 KOG0291 WD40-repeat-containing 100.0 2.8E-37 6.1E-42 258.2 34.7 329 15-375 265-612 (893)
42 KOG0295 WD40 repeat-containing 100.0 4E-39 8.7E-44 247.3 21.7 253 3-322 138-405 (406)
43 KOG0292 Vesicle coat complex C 100.0 1.2E-38 2.5E-43 271.0 26.0 302 10-375 4-321 (1202)
44 KOG0265 U5 snRNP-specific prot 100.0 7.7E-39 1.7E-43 239.7 20.7 253 50-374 39-295 (338)
45 KOG0268 Sof1-like rRNA process 100.0 1.5E-39 3.2E-44 249.6 17.3 287 7-374 58-344 (433)
46 KOG0281 Beta-TrCP (transducin 100.0 6.5E-40 1.4E-44 250.6 15.1 253 6-326 228-480 (499)
47 KOG0285 Pleiotropic regulator 100.0 1.4E-38 3E-43 244.1 21.3 246 51-375 144-389 (460)
48 KOG0306 WD40-repeat-containing 100.0 3.3E-37 7.1E-42 257.7 28.7 283 10-374 368-663 (888)
49 KOG0645 WD40 repeat protein [G 100.0 6.4E-37 1.4E-41 226.3 25.0 246 13-323 59-311 (312)
50 KOG0316 Conserved WD40 repeat- 100.0 4.3E-37 9.3E-42 222.8 23.4 244 51-375 10-257 (307)
51 KOG0640 mRNA cleavage stimulat 100.0 2.7E-37 5.9E-42 232.8 23.0 300 7-373 104-424 (430)
52 KOG0276 Vesicle coat complex C 100.0 4.6E-37 1E-41 251.9 23.8 249 52-374 7-256 (794)
53 KOG0266 WD40 repeat-containing 100.0 2.5E-36 5.5E-41 259.6 29.1 246 57-375 158-409 (456)
54 KOG0288 WD40 repeat protein Ti 100.0 5.5E-38 1.2E-42 244.8 15.9 288 8-373 168-459 (459)
55 KOG1407 WD40 repeat protein [F 100.0 3.8E-36 8.3E-41 221.1 24.2 286 9-375 14-311 (313)
56 KOG0283 WD40 repeat-containing 100.0 1.3E-36 2.9E-41 257.6 24.7 297 9-374 260-575 (712)
57 KOG0278 Serine/threonine kinas 100.0 1.5E-37 3.1E-42 227.3 16.0 254 3-326 47-300 (334)
58 KOG0292 Vesicle coat complex C 100.0 1.3E-36 2.8E-41 258.6 22.7 276 54-375 5-280 (1202)
59 KOG0310 Conserved WD40 repeat- 100.0 1.4E-35 3.1E-40 236.2 25.5 278 15-371 26-305 (487)
60 KOG0973 Histone transcription 100.0 2.2E-35 4.7E-40 256.8 28.8 297 14-375 12-355 (942)
61 KOG1446 Histone H3 (Lys4) meth 100.0 4.2E-34 9.1E-39 216.3 31.6 291 4-373 3-301 (311)
62 KOG0296 Angio-associated migra 100.0 5.6E-35 1.2E-39 224.7 27.0 301 4-323 95-398 (399)
63 KOG0277 Peroxisomal targeting 100.0 9.2E-36 2E-40 218.3 18.4 246 14-322 59-308 (311)
64 KOG0305 Anaphase promoting com 100.0 1.3E-34 2.8E-39 239.2 27.4 272 21-374 183-460 (484)
65 KOG0641 WD40 repeat protein [G 100.0 2.1E-33 4.6E-38 202.8 30.1 297 14-375 31-349 (350)
66 PLN00181 protein SPA1-RELATED; 100.0 2.6E-34 5.7E-39 265.3 32.5 269 37-374 457-737 (793)
67 KOG0313 Microtubule binding pr 100.0 8.5E-35 1.8E-39 224.8 24.3 258 3-324 132-419 (423)
68 KOG0274 Cdc4 and related F-box 100.0 2.1E-34 4.6E-39 246.8 26.9 274 14-375 207-482 (537)
69 cd00200 WD40 WD40 domain, foun 100.0 1.7E-33 3.8E-38 231.8 31.6 248 6-321 42-289 (289)
70 KOG0300 WD40 repeat-containing 100.0 5E-35 1.1E-39 221.6 20.2 299 6-375 139-476 (481)
71 KOG0282 mRNA splicing factor [ 100.0 1.7E-35 3.6E-40 235.5 17.1 255 49-375 205-462 (503)
72 PTZ00421 coronin; Provisional 100.0 6.1E-33 1.3E-37 237.7 32.7 269 15-354 20-313 (493)
73 KOG0305 Anaphase promoting com 100.0 7E-34 1.5E-38 234.9 25.6 244 13-325 215-463 (484)
74 KOG0643 Translation initiation 100.0 4.5E-34 9.8E-39 210.9 21.6 268 3-325 40-319 (327)
75 KOG0294 WD40 repeat-containing 100.0 9.6E-34 2.1E-38 214.0 23.8 248 6-325 34-283 (362)
76 KOG0289 mRNA splicing factor [ 100.0 2.8E-33 6E-38 220.1 26.5 285 16-375 220-506 (506)
77 KOG0293 WD40 repeat-containing 100.0 4.8E-34 1E-38 223.1 21.9 251 51-374 217-469 (519)
78 KOG0772 Uncharacterized conser 100.0 1.1E-33 2.4E-38 227.1 22.1 294 9-372 161-484 (641)
79 KOG0299 U3 snoRNP-associated p 100.0 6E-33 1.3E-37 219.8 25.5 300 8-372 135-453 (479)
80 KOG0289 mRNA splicing factor [ 100.0 3.7E-33 7.9E-38 219.4 23.4 256 4-322 250-505 (506)
81 PTZ00421 coronin; Provisional 100.0 6E-32 1.3E-36 231.6 33.1 230 10-262 70-314 (493)
82 PTZ00420 coronin; Provisional 100.0 8.7E-32 1.9E-36 231.6 33.9 252 34-355 50-317 (568)
83 KOG0294 WD40 repeat-containing 100.0 2E-32 4.4E-37 206.8 25.1 243 51-375 36-281 (362)
84 KOG0264 Nucleosome remodeling 100.0 4.4E-33 9.6E-38 220.3 22.4 264 13-324 122-405 (422)
85 KOG0264 Nucleosome remodeling 100.0 2.3E-33 4.9E-38 221.9 20.5 260 56-375 122-404 (422)
86 KOG0647 mRNA export protein (c 100.0 2.2E-32 4.7E-37 205.5 24.5 278 14-363 26-311 (347)
87 KOG1446 Histone H3 (Lys4) meth 100.0 8.4E-32 1.8E-36 203.9 27.2 253 49-375 5-262 (311)
88 KOG0274 Cdc4 and related F-box 100.0 2.6E-32 5.6E-37 234.0 26.7 246 4-326 237-485 (537)
89 KOG0639 Transducin-like enhanc 100.0 4.3E-33 9.2E-38 223.3 20.3 282 13-374 417-703 (705)
90 KOG0308 Conserved WD40 repeat- 100.0 3.7E-33 8.1E-38 229.9 19.4 287 14-374 20-326 (735)
91 KOG2055 WD40 repeat protein [G 100.0 6.7E-32 1.4E-36 214.0 25.6 294 15-375 213-512 (514)
92 KOG0301 Phospholipase A2-activ 100.0 3.9E-32 8.4E-37 225.6 25.4 279 6-374 5-287 (745)
93 PTZ00420 coronin; Provisional 100.0 3.4E-31 7.3E-36 227.9 31.3 235 7-264 66-319 (568)
94 KOG1407 WD40 repeat protein [F 100.0 3.9E-32 8.6E-37 200.0 21.6 244 52-372 14-258 (313)
95 KOG1036 Mitotic spindle checkp 100.0 2.9E-31 6.4E-36 200.1 26.5 273 14-364 12-293 (323)
96 KOG0299 U3 snoRNP-associated p 100.0 1.3E-31 2.8E-36 212.2 24.4 255 12-321 199-454 (479)
97 KOG4283 Transcription-coupled 100.0 1.8E-31 3.8E-36 200.2 23.8 304 11-373 39-363 (397)
98 KOG2096 WD40 repeat protein [G 100.0 8.2E-31 1.8E-35 198.7 26.7 299 8-373 79-400 (420)
99 KOG0310 Conserved WD40 repeat- 100.0 9.2E-32 2E-36 214.6 21.1 242 58-374 26-267 (487)
100 KOG1408 WD40 repeat protein [F 100.0 3.4E-31 7.3E-36 221.1 25.3 299 9-375 363-713 (1080)
101 KOG1539 WD repeat protein [Gen 100.0 2.4E-30 5.3E-35 219.2 29.8 334 4-373 191-646 (910)
102 KOG1063 RNA polymerase II elon 100.0 7.4E-31 1.6E-35 218.0 25.5 344 6-375 182-648 (764)
103 KOG0275 Conserved WD40 repeat- 100.0 3.5E-32 7.6E-37 206.8 16.1 247 11-321 259-507 (508)
104 KOG2106 Uncharacterized conser 100.0 4.4E-30 9.6E-35 206.0 28.7 338 8-373 147-519 (626)
105 KOG0647 mRNA export protein (c 100.0 1E-30 2.2E-35 196.5 23.3 248 56-373 25-279 (347)
106 KOG1332 Vesicle coat complex C 100.0 3E-31 6.6E-36 193.5 18.9 258 11-324 7-287 (299)
107 KOG0646 WD40 repeat protein [G 100.0 2.3E-30 5.1E-35 205.5 25.5 265 30-354 52-329 (476)
108 KOG0308 Conserved WD40 repeat- 100.0 2.7E-31 5.8E-36 219.1 18.5 212 7-240 65-287 (735)
109 KOG1539 WD repeat protein [Gen 100.0 6.2E-29 1.3E-33 210.8 33.1 351 16-375 160-606 (910)
110 KOG1332 Vesicle coat complex C 100.0 2.6E-31 5.7E-36 193.9 16.2 261 55-373 8-284 (299)
111 KOG0772 Uncharacterized conser 100.0 1.7E-30 3.7E-35 208.9 22.2 259 51-373 160-443 (641)
112 KOG1274 WD40 repeat protein [G 100.0 2.4E-29 5.1E-34 215.5 30.1 277 12-362 10-287 (933)
113 KOG0288 WD40 repeat protein Ti 100.0 1.2E-30 2.6E-35 204.1 18.6 248 6-321 210-459 (459)
114 KOG0640 mRNA cleavage stimulat 100.0 1.3E-30 2.8E-35 197.0 18.1 259 6-323 163-426 (430)
115 KOG0650 WD40 repeat nucleolar 100.0 3.8E-30 8.2E-35 210.5 22.2 299 7-372 392-732 (733)
116 KOG0300 WD40 repeat-containing 100.0 6.7E-30 1.5E-34 193.9 19.5 259 3-325 178-478 (481)
117 KOG0269 WD40 repeat-containing 100.0 2.7E-30 5.9E-35 217.2 18.3 284 16-370 40-335 (839)
118 KOG0321 WD40 repeat-containing 100.0 4E-29 8.7E-34 205.9 24.3 291 21-375 55-391 (720)
119 KOG2445 Nuclear pore complex c 100.0 9.1E-29 2E-33 186.6 24.2 278 55-374 10-317 (361)
120 KOG0973 Histone transcription 100.0 2.5E-29 5.5E-34 219.2 24.5 259 6-325 60-357 (942)
121 KOG0301 Phospholipase A2-activ 100.0 2.6E-29 5.6E-34 208.9 23.3 239 9-325 51-290 (745)
122 KOG0283 WD40 repeat-containing 100.0 6.6E-30 1.4E-34 217.2 20.0 255 51-374 259-531 (712)
123 KOG0641 WD40 repeat protein [G 100.0 7.4E-28 1.6E-32 174.3 26.8 249 11-323 85-349 (350)
124 TIGR03866 PQQ_ABC_repeats PQQ- 100.0 1.5E-27 3.2E-32 198.0 32.0 272 29-375 2-279 (300)
125 KOG2106 Uncharacterized conser 100.0 8.9E-28 1.9E-32 192.9 28.3 334 7-375 96-477 (626)
126 KOG1273 WD40 repeat protein [G 100.0 3.4E-28 7.4E-33 184.2 21.8 287 18-374 26-321 (405)
127 KOG2048 WD40 repeat protein [G 100.0 5.1E-27 1.1E-31 194.9 30.3 288 14-371 24-315 (691)
128 KOG4328 WD40 protein [Function 100.0 4.5E-28 9.9E-33 192.2 23.0 298 9-373 180-493 (498)
129 KOG1063 RNA polymerase II elon 100.0 2.1E-27 4.6E-32 197.6 27.4 297 11-374 263-698 (764)
130 KOG0269 WD40 repeat-containing 100.0 3.6E-29 7.7E-34 210.6 17.0 248 58-375 39-296 (839)
131 KOG2048 WD40 repeat protein [G 100.0 2.1E-26 4.6E-31 191.3 32.7 211 8-242 61-279 (691)
132 KOG0646 WD40 repeat protein [G 100.0 7.5E-28 1.6E-32 191.4 23.1 273 34-374 13-306 (476)
133 KOG1036 Mitotic spindle checkp 100.0 1.8E-27 4E-32 179.7 23.8 246 57-374 12-261 (323)
134 KOG0268 Sof1-like rRNA process 100.0 4.5E-29 9.8E-34 192.3 14.2 242 51-374 59-301 (433)
135 KOG1009 Chromatin assembly com 100.0 2.4E-27 5.3E-32 185.4 22.2 303 15-374 13-371 (434)
136 KOG0267 Microtubule severing p 100.0 1.2E-29 2.6E-34 211.9 9.3 254 30-366 6-259 (825)
137 KOG0267 Microtubule severing p 100.0 4E-29 8.8E-34 208.8 11.5 207 10-241 23-229 (825)
138 KOG1034 Transcriptional repres 100.0 7.4E-27 1.6E-31 177.9 22.7 314 12-374 35-382 (385)
139 KOG0270 WD40 repeat-containing 100.0 8.1E-27 1.7E-31 184.5 23.7 285 20-374 130-448 (463)
140 KOG2445 Nuclear pore complex c 100.0 5.8E-26 1.3E-30 171.6 27.1 276 12-325 10-320 (361)
141 TIGR03866 PQQ_ABC_repeats PQQ- 100.0 8.2E-26 1.8E-30 187.5 31.1 276 4-354 20-300 (300)
142 KOG0307 Vesicle coat complex C 100.0 1.9E-28 4.1E-33 214.9 14.1 288 20-374 11-326 (1049)
143 KOG1445 Tumor-specific antigen 100.0 3.5E-27 7.7E-32 194.9 20.5 167 7-178 71-249 (1012)
144 KOG0302 Ribosome Assembly prot 100.0 2.3E-27 5.1E-32 183.8 18.1 258 56-372 149-435 (440)
145 KOG0302 Ribosome Assembly prot 100.0 2.1E-26 4.5E-31 178.6 21.9 265 12-321 148-436 (440)
146 KOG4283 Transcription-coupled 100.0 2.8E-26 6.1E-31 172.4 21.3 226 55-328 40-281 (397)
147 KOG1408 WD40 repeat protein [F 99.9 3.1E-26 6.7E-31 191.8 20.5 249 14-325 458-715 (1080)
148 KOG4378 Nuclear protein COP1 [ 99.9 4.5E-26 9.7E-31 183.0 19.5 266 17-354 36-303 (673)
149 KOG1188 WD40 repeat protein [G 99.9 5.2E-26 1.1E-30 174.2 18.9 289 29-374 41-345 (376)
150 KOG1007 WD repeat protein TSSC 99.9 8E-25 1.7E-29 164.1 23.2 280 36-374 38-360 (370)
151 KOG2919 Guanine nucleotide-bin 99.9 1.4E-24 3E-29 165.4 23.3 277 18-365 52-360 (406)
152 KOG0639 Transducin-like enhanc 99.9 4.5E-26 9.9E-31 183.3 16.1 237 15-322 465-703 (705)
153 KOG1274 WD40 repeat protein [G 99.9 1.7E-24 3.7E-29 186.0 26.6 248 56-375 11-262 (933)
154 KOG1007 WD repeat protein TSSC 99.9 4.5E-25 9.7E-30 165.4 20.1 277 9-325 57-363 (370)
155 KOG4378 Nuclear protein COP1 [ 99.9 2.7E-25 5.7E-30 178.6 18.9 269 31-375 7-280 (673)
156 KOG2096 WD40 repeat protein [G 99.9 1.9E-24 4E-29 164.4 22.4 262 51-373 79-358 (420)
157 KOG0270 WD40 repeat-containing 99.9 2E-25 4.3E-30 176.7 17.8 211 11-241 239-452 (463)
158 KOG0321 WD40 repeat-containing 99.9 6.5E-25 1.4E-29 181.3 20.7 258 8-326 93-394 (720)
159 KOG1273 WD40 repeat protein [G 99.9 4.2E-24 9.2E-29 162.2 23.4 250 61-374 26-279 (405)
160 KOG1034 Transcriptional repres 99.9 8.9E-26 1.9E-30 172.1 14.4 264 14-323 88-383 (385)
161 KOG1538 Uncharacterized conser 99.9 1.8E-24 3.8E-29 180.2 21.5 279 17-374 14-292 (1081)
162 KOG0322 G-protein beta subunit 99.9 1.2E-24 2.5E-29 161.2 17.4 302 6-374 5-322 (323)
163 KOG0290 Conserved WD40 repeat- 99.9 8.8E-23 1.9E-27 153.4 25.4 302 5-371 35-361 (364)
164 KOG1310 WD40 repeat protein [G 99.9 6.4E-24 1.4E-28 172.9 20.5 227 7-243 42-308 (758)
165 KOG2055 WD40 repeat protein [G 99.9 1.2E-23 2.6E-28 167.5 21.5 247 58-374 213-466 (514)
166 KOG0649 WD40 repeat protein [G 99.9 3.5E-22 7.5E-27 146.5 26.0 283 16-372 11-313 (325)
167 KOG4328 WD40 protein [Function 99.9 9.5E-24 2.1E-28 167.9 19.3 264 44-373 172-448 (498)
168 KOG0307 Vesicle coat complex C 99.9 2.3E-24 5E-29 189.6 15.0 249 16-326 65-330 (1049)
169 KOG1334 WD40 repeat protein [G 99.9 1.4E-23 3E-28 168.4 17.2 314 6-373 133-464 (559)
170 KOG0303 Actin-binding protein 99.9 9.3E-23 2E-27 159.5 20.6 229 10-262 76-320 (472)
171 KOG0642 Cell-cycle nuclear pro 99.9 1.3E-23 2.8E-28 171.4 16.0 262 7-325 286-563 (577)
172 COG2319 FOG: WD40 repeat [Gene 99.9 6.9E-21 1.5E-25 166.5 34.5 292 10-375 60-359 (466)
173 KOG4227 WD40 repeat protein [G 99.9 1.1E-22 2.4E-27 159.2 19.8 313 8-373 49-385 (609)
174 PRK11028 6-phosphogluconolacto 99.9 4.2E-21 9.1E-26 160.6 30.6 279 31-374 5-303 (330)
175 KOG0650 WD40 repeat nucleolar 99.9 2.3E-22 5.1E-27 165.3 21.5 243 51-373 393-678 (733)
176 KOG0644 Uncharacterized conser 99.9 1.2E-24 2.6E-29 185.2 8.5 286 3-373 178-466 (1113)
177 KOG1240 Protein kinase contain 99.9 8.1E-22 1.7E-26 174.7 26.2 329 4-373 1037-1431(1431)
178 KOG0303 Actin-binding protein 99.9 3.2E-22 6.9E-27 156.5 20.9 225 79-375 56-294 (472)
179 KOG1963 WD40 repeat protein [G 99.9 2.3E-21 5E-26 166.4 27.2 308 13-374 203-537 (792)
180 KOG2919 Guanine nucleotide-bin 99.9 1.2E-21 2.7E-26 149.5 22.0 251 60-375 51-327 (406)
181 KOG0642 Cell-cycle nuclear pro 99.9 4.7E-23 1E-27 168.2 14.7 258 52-374 288-560 (577)
182 KOG1445 Tumor-specific antigen 99.9 7.4E-22 1.6E-26 163.8 20.7 158 147-367 628-786 (1012)
183 KOG1587 Cytoplasmic dynein int 99.9 1.4E-21 3.1E-26 166.9 23.0 251 14-325 241-518 (555)
184 KOG1523 Actin-related protein 99.9 3.4E-21 7.3E-26 146.8 22.2 223 10-241 5-239 (361)
185 KOG1538 Uncharacterized conser 99.9 6.9E-22 1.5E-26 164.9 19.8 247 4-325 42-295 (1081)
186 KOG1517 Guanine nucleotide bin 99.9 3.8E-21 8.3E-26 168.1 24.5 293 16-374 1065-1380(1387)
187 COG2319 FOG: WD40 repeat [Gene 99.9 3.4E-19 7.4E-24 155.8 36.6 328 7-375 100-442 (466)
188 KOG1587 Cytoplasmic dynein int 99.9 2.2E-20 4.7E-25 159.8 26.5 276 38-375 222-516 (555)
189 KOG1188 WD40 repeat protein [G 99.9 2.2E-21 4.8E-26 149.1 16.6 273 3-325 58-348 (376)
190 KOG0290 Conserved WD40 repeat- 99.9 1.5E-20 3.3E-25 141.5 20.6 257 51-375 38-318 (364)
191 KOG2110 Uncharacterized conser 99.9 4.6E-19 9.9E-24 137.9 28.3 199 17-241 48-251 (391)
192 KOG0771 Prolactin regulatory e 99.9 1.1E-19 2.5E-24 143.6 22.3 201 107-374 148-353 (398)
193 KOG1963 WD40 repeat protein [G 99.9 2.3E-18 4.9E-23 148.3 30.9 341 2-374 44-486 (792)
194 KOG1524 WD40 repeat-containing 99.9 6.5E-20 1.4E-24 149.4 20.0 263 13-371 12-282 (737)
195 KOG1009 Chromatin assembly com 99.9 8.9E-20 1.9E-24 143.4 19.3 257 8-325 58-374 (434)
196 KOG4227 WD40 repeat protein [G 99.9 3.2E-20 7E-25 145.6 16.8 259 51-375 49-322 (609)
197 PF02239 Cytochrom_D1: Cytochr 99.9 1.6E-17 3.4E-22 138.5 32.0 310 29-374 6-346 (369)
198 KOG0771 Prolactin regulatory e 99.8 4.4E-20 9.4E-25 146.0 15.0 198 19-239 148-355 (398)
199 KOG0649 WD40 repeat protein [G 99.8 4.4E-18 9.5E-23 125.2 24.3 200 7-239 54-275 (325)
200 PRK11028 6-phosphogluconolacto 99.8 1.5E-17 3.3E-22 139.2 29.7 260 7-324 27-305 (330)
201 KOG0644 Uncharacterized conser 99.8 3.6E-21 7.8E-26 164.3 7.8 245 49-374 181-425 (1113)
202 PRK01742 tolB translocation pr 99.8 3.4E-19 7.3E-24 153.5 19.7 236 37-355 183-426 (429)
203 KOG1517 Guanine nucleotide bin 99.8 9.7E-19 2.1E-23 153.4 21.6 250 59-375 1065-1333(1387)
204 KOG2110 Uncharacterized conser 99.8 6.4E-18 1.4E-22 131.6 23.5 233 103-375 5-248 (391)
205 KOG1524 WD40 repeat-containing 99.8 5.5E-19 1.2E-23 144.0 17.7 172 29-229 76-247 (737)
206 KOG1272 WD40-repeat-containing 99.8 1.8E-20 3.8E-25 149.9 8.6 232 58-373 129-360 (545)
207 KOG1523 Actin-related protein 99.8 5.8E-18 1.3E-22 129.4 21.5 225 57-326 9-239 (361)
208 KOG2139 WD40 repeat protein [G 99.8 1.4E-17 3.1E-22 129.4 23.6 306 16-374 99-430 (445)
209 KOG1310 WD40 repeat protein [G 99.8 3.1E-19 6.6E-24 145.9 15.1 247 50-327 42-307 (758)
210 KOG4497 Uncharacterized conser 99.8 2E-18 4.2E-23 132.6 18.5 310 16-374 49-390 (447)
211 KOG1240 Protein kinase contain 99.8 4E-18 8.7E-23 151.7 21.8 275 43-375 1034-1334(1431)
212 KOG2139 WD40 repeat protein [G 99.8 9.2E-17 2E-21 125.0 25.6 213 15-239 140-384 (445)
213 PRK01742 tolB translocation pr 99.8 5.3E-18 1.2E-22 146.1 19.5 202 4-238 192-401 (429)
214 KOG1272 WD40-repeat-containing 99.8 3.6E-19 7.9E-24 142.5 10.5 266 17-316 131-402 (545)
215 KOG2321 WD40 repeat protein [G 99.8 6.3E-17 1.4E-21 133.2 23.1 292 13-373 49-341 (703)
216 PF02239 Cytochrom_D1: Cytochr 99.8 1.9E-16 4.1E-21 132.1 26.2 305 4-327 25-351 (369)
217 KOG0322 G-protein beta subunit 99.8 4.6E-18 1E-22 126.5 14.5 248 6-322 46-322 (323)
218 KOG2394 WD40 protein DMR-N9 [G 99.8 6.1E-18 1.3E-22 138.0 15.2 163 15-181 219-456 (636)
219 KOG2394 WD40 protein DMR-N9 [G 99.8 8.5E-17 1.9E-21 131.4 21.1 234 61-353 126-383 (636)
220 KOG3881 Uncharacterized conser 99.8 2.9E-16 6.4E-21 123.4 21.7 248 14-325 54-322 (412)
221 PRK03629 tolB translocation pr 99.8 5.8E-16 1.3E-20 133.2 25.7 234 38-354 179-427 (429)
222 KOG3881 Uncharacterized conser 99.8 2E-16 4.3E-21 124.3 19.3 255 57-375 54-320 (412)
223 KOG1334 WD40 repeat protein [G 99.8 4.2E-17 9.1E-22 131.6 15.9 277 51-373 135-422 (559)
224 KOG2111 Uncharacterized conser 99.8 7.2E-15 1.6E-19 112.7 27.0 179 38-240 75-258 (346)
225 KOG2111 Uncharacterized conser 99.8 1.7E-15 3.7E-20 116.0 23.4 238 60-375 7-256 (346)
226 PRK03629 tolB translocation pr 99.8 7.4E-16 1.6E-20 132.6 24.4 205 5-239 188-407 (429)
227 PRK04922 tolB translocation pr 99.7 7.3E-16 1.6E-20 133.3 22.3 235 38-354 184-432 (433)
228 PRK02889 tolB translocation pr 99.7 1.2E-15 2.7E-20 131.3 22.3 235 38-354 176-424 (427)
229 KOG1409 Uncharacterized conser 99.7 3.3E-15 7.3E-20 115.7 20.4 254 7-327 16-274 (404)
230 KOG4497 Uncharacterized conser 99.7 1.4E-15 3E-20 117.1 18.1 283 11-367 87-424 (447)
231 KOG1354 Serine/threonine prote 99.7 5E-15 1.1E-19 114.8 20.7 275 15-327 25-363 (433)
232 PRK04922 tolB translocation pr 99.7 4.4E-15 9.5E-20 128.4 22.9 206 4-239 192-412 (433)
233 PRK05137 tolB translocation pr 99.7 1.1E-14 2.4E-19 126.1 25.3 174 38-239 182-367 (435)
234 PRK05137 tolB translocation pr 99.7 1.4E-14 3E-19 125.5 24.6 207 4-240 190-414 (435)
235 PRK02889 tolB translocation pr 99.7 1E-14 2.2E-19 125.7 23.2 205 4-238 184-403 (427)
236 KOG0280 Uncharacterized conser 99.7 1.1E-14 2.4E-19 110.5 19.5 273 36-373 44-331 (339)
237 KOG1409 Uncharacterized conser 99.7 2.6E-15 5.6E-20 116.3 16.1 250 50-375 16-270 (404)
238 PF10282 Lactonase: Lactonase, 99.7 1.3E-12 2.7E-17 109.6 33.5 274 38-374 13-321 (345)
239 PF08662 eIF2A: Eukaryotic tra 99.7 1.3E-14 2.7E-19 110.2 18.5 156 19-186 9-187 (194)
240 KOG2315 Predicted translation 99.7 2.4E-13 5.2E-18 112.2 26.9 315 16-374 35-389 (566)
241 PF08662 eIF2A: Eukaryotic tra 99.7 2.6E-14 5.7E-19 108.5 18.2 150 62-239 9-180 (194)
242 PF10282 Lactonase: Lactonase, 99.6 2.7E-12 5.8E-17 107.6 31.5 254 17-323 38-322 (345)
243 TIGR02800 propeller_TolB tol-p 99.6 2.3E-13 5E-18 118.2 23.7 204 5-238 179-397 (417)
244 KOG0280 Uncharacterized conser 99.6 1.6E-13 3.6E-18 104.2 18.8 252 15-325 69-335 (339)
245 KOG2321 WD40 repeat protein [G 99.6 9.5E-14 2.1E-18 114.9 18.3 243 57-373 50-300 (703)
246 TIGR02800 propeller_TolB tol-p 99.6 4.8E-13 1E-17 116.2 24.0 176 38-240 170-356 (417)
247 KOG2314 Translation initiation 99.6 2.5E-12 5.5E-17 106.2 26.0 314 19-374 214-572 (698)
248 PRK00178 tolB translocation pr 99.6 6.4E-13 1.4E-17 115.4 24.2 207 4-239 187-407 (430)
249 PRK00178 tolB translocation pr 99.6 5.2E-13 1.1E-17 116.0 23.6 175 39-240 180-365 (430)
250 KOG0974 WD-repeat protein WDR6 99.6 1.6E-13 3.4E-18 121.2 20.1 270 14-374 6-287 (967)
251 PRK01029 tolB translocation pr 99.6 1.3E-12 2.8E-17 112.2 24.7 213 4-240 173-405 (428)
252 COG2706 3-carboxymuconate cycl 99.6 3.2E-11 6.9E-16 95.0 29.7 277 37-374 15-320 (346)
253 PRK04792 tolB translocation pr 99.6 1.1E-12 2.3E-17 113.6 24.0 175 39-240 199-384 (448)
254 KOG4547 WD40 repeat-containing 99.6 1.2E-12 2.7E-17 108.8 22.7 192 68-324 3-221 (541)
255 KOG2041 WD40 repeat protein [G 99.6 4E-13 8.7E-18 114.3 19.9 294 15-372 14-334 (1189)
256 PRK04792 tolB translocation pr 99.6 9.4E-13 2E-17 114.0 22.7 202 8-238 210-425 (448)
257 COG2706 3-carboxymuconate cycl 99.6 4.9E-11 1.1E-15 94.0 29.7 263 13-325 37-323 (346)
258 KOG1354 Serine/threonine prote 99.6 2.7E-13 5.9E-18 105.3 15.6 265 58-374 25-358 (433)
259 KOG0974 WD-repeat protein WDR6 99.6 3E-13 6.5E-18 119.4 17.6 201 59-325 88-290 (967)
260 COG5354 Uncharacterized protei 99.6 7.7E-12 1.7E-16 102.4 24.2 317 14-374 31-394 (561)
261 TIGR02658 TTQ_MADH_Hv methylam 99.6 5.4E-11 1.2E-15 97.4 29.1 271 38-374 27-329 (352)
262 PRK01029 tolB translocation pr 99.5 8.6E-12 1.9E-16 107.2 24.9 220 38-326 165-406 (428)
263 KOG1064 RAVE (regulator of V-A 99.5 1.1E-13 2.4E-18 128.4 13.3 193 11-243 2204-2403(2439)
264 PF04762 IKI3: IKI3 family; I 99.5 1E-10 2.2E-15 108.7 31.4 203 15-240 75-335 (928)
265 KOG4547 WD40 repeat-containing 99.5 1.3E-11 2.8E-16 102.9 22.7 194 27-239 4-221 (541)
266 KOG4190 Uncharacterized conser 99.5 2.1E-13 4.6E-18 112.8 11.1 283 8-319 728-1032(1034)
267 TIGR03300 assembly_YfgL outer 99.5 6.8E-11 1.5E-15 101.1 26.3 260 28-372 105-376 (377)
268 COG5354 Uncharacterized protei 99.5 1.6E-10 3.5E-15 94.9 26.1 276 16-325 72-397 (561)
269 KOG1912 WD40 repeat protein [G 99.5 4.1E-11 8.9E-16 103.2 22.4 330 4-364 44-485 (1062)
270 KOG0309 Conserved WD40 repeat- 99.5 9.7E-13 2.1E-17 112.3 12.5 298 15-374 24-338 (1081)
271 KOG1064 RAVE (regulator of V-A 99.5 1.2E-12 2.6E-17 121.8 14.0 216 31-326 2183-2401(2439)
272 COG4946 Uncharacterized protei 99.4 1.4E-09 2.9E-14 88.9 28.6 153 23-184 327-484 (668)
273 TIGR02658 TTQ_MADH_Hv methylam 99.4 2.3E-09 5.1E-14 87.9 30.4 256 4-327 36-334 (352)
274 PLN02919 haloacid dehalogenase 99.4 7.7E-10 1.7E-14 104.9 30.3 269 19-327 571-892 (1057)
275 KOG4190 Uncharacterized conser 99.4 1.2E-12 2.5E-17 108.5 9.6 215 51-325 728-950 (1034)
276 KOG4714 Nucleoporin [Nuclear s 99.4 2.3E-11 5E-16 91.2 14.5 200 18-239 39-255 (319)
277 TIGR03300 assembly_YfgL outer 99.4 1.8E-09 3.9E-14 92.4 28.3 266 28-374 65-337 (377)
278 KOG4532 WD40-like repeat conta 99.4 4.5E-10 9.8E-15 84.8 20.6 264 36-366 50-323 (344)
279 PF15492 Nbas_N: Neuroblastoma 99.4 2.5E-09 5.4E-14 82.0 24.4 231 64-326 3-262 (282)
280 PF04762 IKI3: IKI3 family; I 99.4 6E-09 1.3E-13 97.2 31.7 323 16-374 22-378 (928)
281 KOG3914 WD repeat protein WDR4 99.3 2.8E-11 6.2E-16 96.2 13.0 163 60-245 64-230 (390)
282 KOG3914 WD repeat protein WDR4 99.3 4.9E-11 1.1E-15 94.9 14.0 161 20-188 67-234 (390)
283 PLN02919 haloacid dehalogenase 99.3 6.1E-09 1.3E-13 98.9 30.5 280 62-375 571-888 (1057)
284 KOG0309 Conserved WD40 repeat- 99.3 1.1E-11 2.5E-16 106.0 11.1 259 18-325 70-341 (1081)
285 KOG2041 WD40 repeat protein [G 99.3 2.1E-10 4.5E-15 98.2 18.3 194 9-229 65-279 (1189)
286 KOG2315 Predicted translation 99.3 1.5E-09 3.2E-14 90.3 22.6 235 19-325 129-392 (566)
287 COG5170 CDC55 Serine/threonine 99.3 8.3E-11 1.8E-15 90.7 13.9 266 58-372 26-364 (460)
288 COG5170 CDC55 Serine/threonine 99.3 1.9E-10 4.1E-15 88.7 15.5 215 15-242 26-313 (460)
289 KOG2314 Translation initiation 99.3 3.2E-09 6.9E-14 88.4 23.3 276 17-325 251-575 (698)
290 COG4946 Uncharacterized protei 99.3 9.9E-09 2.1E-13 84.0 24.5 142 13-161 357-503 (668)
291 KOG4714 Nucleoporin [Nuclear s 99.3 1E-10 2.2E-15 87.8 11.9 167 7-178 81-255 (319)
292 PRK04043 tolB translocation pr 99.3 8.4E-09 1.8E-13 88.3 24.6 203 5-239 178-401 (419)
293 KOG0882 Cyclophilin-related pe 99.2 8.6E-10 1.9E-14 89.3 16.6 293 13-328 7-310 (558)
294 KOG1912 WD40 repeat protein [G 99.2 1.5E-09 3.1E-14 94.0 18.8 156 59-238 16-186 (1062)
295 PF08450 SGL: SMP-30/Gluconola 99.2 2.3E-07 4.9E-12 74.4 30.4 194 20-238 4-213 (246)
296 KOG4649 PQQ (pyrrolo-quinoline 99.2 1.5E-07 3.3E-12 71.3 26.6 150 21-178 16-166 (354)
297 PRK04043 tolB translocation pr 99.2 1E-08 2.2E-13 87.8 23.4 173 38-240 169-359 (419)
298 PF07433 DUF1513: Protein of u 99.2 1.2E-07 2.5E-12 75.3 26.7 209 18-241 7-250 (305)
299 PRK11138 outer membrane biogen 99.2 1.7E-08 3.8E-13 86.7 23.8 263 29-375 121-394 (394)
300 PF08450 SGL: SMP-30/Gluconola 99.2 2E-07 4.3E-12 74.7 28.1 225 63-363 4-243 (246)
301 KOG2695 WD40 repeat protein [G 99.2 9.1E-11 2E-15 91.6 8.0 163 21-188 217-387 (425)
302 PF13360 PQQ_2: PQQ-like domai 99.2 4.5E-08 9.8E-13 78.2 23.4 227 37-327 2-234 (238)
303 KOG4532 WD40-like repeat conta 99.2 1.6E-08 3.4E-13 76.7 18.8 159 30-188 130-293 (344)
304 KOG1645 RING-finger-containing 99.1 1.3E-08 2.9E-13 81.4 17.8 263 82-375 175-461 (463)
305 KOG0882 Cyclophilin-related pe 99.1 6.3E-09 1.4E-13 84.5 14.8 224 57-328 8-236 (558)
306 PF00400 WD40: WD domain, G-be 99.1 2.4E-10 5.2E-15 62.2 4.7 38 6-44 2-39 (39)
307 PF15492 Nbas_N: Neuroblastoma 99.1 2.1E-07 4.5E-12 71.7 21.5 198 18-247 46-268 (282)
308 KOG1920 IkappaB kinase complex 99.0 2E-07 4.2E-12 85.2 23.8 241 15-326 68-325 (1265)
309 PF07433 DUF1513: Protein of u 99.0 1.5E-06 3.3E-11 69.1 25.9 210 61-326 7-250 (305)
310 KOG1645 RING-finger-containing 99.0 7.2E-08 1.6E-12 77.4 18.4 161 4-167 182-351 (463)
311 PRK11138 outer membrane biogen 99.0 1.1E-06 2.3E-11 75.8 27.0 193 28-242 69-278 (394)
312 KOG1275 PAB-dependent poly(A) 99.0 1.3E-08 2.8E-13 89.9 14.4 186 70-322 147-341 (1118)
313 KOG2695 WD40 repeat protein [G 99.0 2.8E-09 6.1E-14 83.5 9.3 149 74-247 228-385 (425)
314 PF13360 PQQ_2: PQQ-like domai 99.0 1.8E-07 3.9E-12 74.7 20.2 189 28-243 36-235 (238)
315 KOG1275 PAB-dependent poly(A) 99.0 2.5E-08 5.5E-13 88.1 15.4 184 28-237 147-341 (1118)
316 PF00400 WD40: WD domain, G-be 99.0 3E-09 6.6E-14 57.7 6.1 39 48-86 1-39 (39)
317 KOG1832 HIV-1 Vpr-binding prot 99.0 5.5E-10 1.2E-14 98.1 4.3 220 7-267 1093-1317(1516)
318 KOG2066 Vacuolar assembly/sort 98.9 1E-07 2.2E-12 83.2 17.5 188 15-238 39-233 (846)
319 KOG2066 Vacuolar assembly/sort 98.9 2.2E-07 4.8E-12 81.3 16.8 154 58-247 39-196 (846)
320 KOG2114 Vacuolar assembly/sort 98.8 2.9E-06 6.3E-11 75.1 22.8 198 17-239 27-244 (933)
321 PF06977 SdiA-regulated: SdiA- 98.8 2E-05 4.4E-10 61.9 25.2 214 9-235 15-247 (248)
322 PF14583 Pectate_lyase22: Olig 98.8 5.8E-05 1.3E-09 62.3 27.9 298 44-373 16-379 (386)
323 PF00930 DPPIV_N: Dipeptidyl p 98.7 4.6E-05 1E-09 64.5 26.9 158 24-185 1-226 (353)
324 KOG2114 Vacuolar assembly/sort 98.7 3.8E-06 8.1E-11 74.4 20.1 195 65-326 30-246 (933)
325 PRK02888 nitrous-oxide reducta 98.7 1.4E-05 3.1E-10 69.9 22.9 240 31-324 69-405 (635)
326 PF11768 DUF3312: Protein of u 98.7 9.7E-06 2.1E-10 69.2 21.2 116 60-180 207-332 (545)
327 KOG1832 HIV-1 Vpr-binding prot 98.7 2.8E-08 6.1E-13 87.7 6.4 196 94-325 1092-1293(1516)
328 KOG3617 WD40 and TPR repeat-co 98.7 6.2E-07 1.3E-11 79.2 14.2 159 18-188 62-230 (1416)
329 PRK02888 nitrous-oxide reducta 98.7 7.6E-06 1.6E-10 71.5 20.1 184 23-239 200-405 (635)
330 KOG1008 Uncharacterized conser 98.7 2.1E-08 4.5E-13 85.3 4.4 208 15-239 56-276 (783)
331 KOG1008 Uncharacterized conser 98.6 2.4E-08 5.3E-13 84.9 4.0 203 104-374 57-274 (783)
332 KOG1920 IkappaB kinase complex 98.6 2.9E-05 6.2E-10 71.7 22.7 243 58-374 68-321 (1265)
333 cd00216 PQQ_DH Dehydrogenases 98.6 7.8E-05 1.7E-09 66.0 24.4 206 29-247 62-328 (488)
334 PF04053 Coatomer_WDAD: Coatom 98.6 3.6E-05 7.8E-10 66.2 21.5 148 53-239 27-174 (443)
335 KOG3621 WD40 repeat-containing 98.6 5.1E-05 1.1E-09 66.1 21.6 152 22-179 40-199 (726)
336 PF04053 Coatomer_WDAD: Coatom 98.6 0.0001 2.2E-09 63.5 23.5 149 9-178 26-174 (443)
337 KOG3617 WD40 and TPR repeat-co 98.5 3.3E-06 7.1E-11 74.8 14.3 109 62-177 19-131 (1416)
338 PF11768 DUF3312: Protein of u 98.5 0.00042 9.2E-09 59.5 26.5 144 148-354 207-367 (545)
339 KOG4649 PQQ (pyrrolo-quinoline 98.5 0.00017 3.6E-09 55.4 21.0 67 28-94 63-129 (354)
340 PF06433 Me-amine-dh_H: Methyl 98.5 0.00038 8.3E-09 56.5 24.9 183 38-241 17-216 (342)
341 COG0823 TolB Periplasmic compo 98.5 1.8E-05 3.9E-10 67.7 16.9 171 7-185 184-366 (425)
342 PF08596 Lgl_C: Lethal giant l 98.5 0.00013 2.8E-09 61.9 21.4 151 17-177 3-173 (395)
343 PF08553 VID27: VID27 cytoplas 98.4 4.5E-05 9.7E-10 69.4 19.1 143 29-177 494-647 (794)
344 KOG3621 WD40 repeat-containing 98.4 9.3E-06 2E-10 70.5 13.8 123 103-239 33-155 (726)
345 PF08596 Lgl_C: Lethal giant l 98.4 0.00023 5.1E-09 60.4 21.7 159 60-238 3-173 (395)
346 COG3391 Uncharacterized conser 98.4 0.00097 2.1E-08 57.1 25.5 231 17-269 32-270 (381)
347 PF00780 CNH: CNH domain; Int 98.4 0.00049 1.1E-08 56.3 23.0 221 68-326 5-258 (275)
348 PF05096 Glu_cyclase_2: Glutam 98.3 0.00077 1.7E-08 52.9 22.9 197 105-364 46-250 (264)
349 COG0823 TolB Periplasmic compo 98.3 0.00013 2.8E-09 62.6 18.6 201 39-268 174-386 (425)
350 PF03178 CPSF_A: CPSF A subuni 98.3 0.00058 1.3E-08 57.2 21.9 191 115-371 42-261 (321)
351 PF04841 Vps16_N: Vps16, N-ter 98.3 0.0015 3.2E-08 56.4 24.2 196 39-262 62-270 (410)
352 COG3391 Uncharacterized conser 98.3 0.00087 1.9E-08 57.3 22.6 199 19-243 77-288 (381)
353 PF03178 CPSF_A: CPSF A subuni 98.3 0.0014 3.1E-08 54.8 23.4 177 38-238 2-202 (321)
354 PF14583 Pectate_lyase22: Olig 98.2 0.002 4.3E-08 53.6 24.8 244 3-271 18-302 (386)
355 PF06977 SdiA-regulated: SdiA- 98.2 0.00033 7.2E-09 55.2 16.9 177 144-374 19-200 (248)
356 PF00930 DPPIV_N: Dipeptidyl p 98.2 0.0011 2.3E-08 56.3 21.1 164 15-180 42-271 (353)
357 KOG4640 Anaphase-promoting com 98.1 1.4E-05 3.1E-10 68.5 8.7 95 58-156 20-115 (665)
358 COG3386 Gluconolactonase [Carb 98.1 0.0038 8.2E-08 51.2 23.0 150 22-177 31-193 (307)
359 PF14783 BBS2_Mid: Ciliary BBS 98.1 0.00082 1.8E-08 44.8 14.2 103 106-233 2-109 (111)
360 KOG4640 Anaphase-promoting com 98.1 2.6E-05 5.6E-10 67.0 9.0 94 16-113 21-115 (665)
361 smart00320 WD40 WD40 repeats. 98.1 8.6E-06 1.9E-10 43.6 4.4 39 5-44 2-40 (40)
362 cd00216 PQQ_DH Dehydrogenases 98.1 0.0035 7.7E-08 55.7 22.5 194 36-248 173-434 (488)
363 COG3490 Uncharacterized protei 98.0 0.0031 6.8E-08 49.4 18.8 210 18-241 70-313 (366)
364 KOG2395 Protein involved in va 98.0 0.00018 3.8E-09 60.9 12.9 142 30-177 348-500 (644)
365 KOG4441 Proteins containing BT 98.0 0.0035 7.5E-08 56.5 21.4 184 28-239 285-500 (571)
366 PF08553 VID27: VID27 cytoplas 98.0 0.00044 9.6E-09 63.2 15.4 149 161-373 495-645 (794)
367 PF04841 Vps16_N: Vps16, N-ter 98.0 0.0026 5.7E-08 54.9 19.5 187 3-212 68-269 (410)
368 PF05694 SBP56: 56kDa selenium 97.9 0.0049 1.1E-07 51.9 19.6 237 28-270 87-392 (461)
369 KOG2444 WD40 repeat protein [G 97.9 6.6E-06 1.4E-10 61.6 2.8 63 303-375 112-177 (238)
370 COG3490 Uncharacterized protei 97.9 0.0058 1.3E-07 48.0 18.6 102 61-165 70-179 (366)
371 PF14783 BBS2_Mid: Ciliary BBS 97.9 0.002 4.3E-08 43.0 13.8 101 18-128 2-109 (111)
372 PHA02713 hypothetical protein; 97.9 0.0052 1.1E-07 55.5 21.2 92 39-135 273-377 (557)
373 PF06433 Me-amine-dh_H: Methyl 97.9 0.0038 8.2E-08 51.0 18.0 159 25-186 144-329 (342)
374 smart00320 WD40 WD40 repeats. 97.9 4.8E-05 1E-09 40.5 5.4 38 49-86 3-40 (40)
375 PF05694 SBP56: 56kDa selenium 97.9 0.0057 1.2E-07 51.5 19.1 219 69-326 86-345 (461)
376 PF02897 Peptidase_S9_N: Proly 97.9 0.015 3.2E-07 50.8 26.7 114 61-179 126-262 (414)
377 KOG1897 Damage-specific DNA bi 97.9 0.023 5E-07 52.5 30.1 317 15-372 530-895 (1096)
378 PF05096 Glu_cyclase_2: Glutam 97.8 0.009 2E-07 47.1 21.1 194 18-226 47-249 (264)
379 COG3204 Uncharacterized protei 97.8 0.012 2.5E-07 46.7 20.2 174 11-187 81-272 (316)
380 PRK13616 lipoprotein LpqB; Pro 97.8 0.0086 1.9E-07 54.1 19.9 150 16-176 350-524 (591)
381 PRK13616 lipoprotein LpqB; Pro 97.7 0.011 2.4E-07 53.4 20.0 103 59-173 350-472 (591)
382 KOG2395 Protein involved in va 97.7 0.0011 2.4E-08 56.4 12.5 148 156-365 343-491 (644)
383 PF02897 Peptidase_S9_N: Proly 97.7 0.03 6.4E-07 49.0 29.3 197 18-238 126-357 (414)
384 PHA02713 hypothetical protein; 97.7 0.0041 9E-08 56.1 16.6 185 28-240 304-535 (557)
385 TIGR03075 PQQ_enz_alc_DH PQQ-d 97.6 0.044 9.6E-07 49.1 23.6 48 219-266 471-518 (527)
386 TIGR03075 PQQ_enz_alc_DH PQQ-d 97.6 0.051 1.1E-06 48.8 29.1 200 29-243 70-338 (527)
387 COG3386 Gluconolactonase [Carb 97.5 0.034 7.4E-07 45.8 21.1 225 65-364 31-274 (307)
388 COG5276 Uncharacterized conser 97.5 0.035 7.6E-07 44.0 28.7 198 16-240 87-287 (370)
389 PF14655 RAB3GAP2_N: Rab3 GTPa 97.5 0.059 1.3E-06 46.2 23.2 53 281-345 298-350 (415)
390 KOG4441 Proteins containing BT 97.4 0.021 4.5E-07 51.7 17.2 147 69-240 284-454 (571)
391 KOG4499 Ca2+-binding protein R 97.4 0.038 8.2E-07 42.3 18.1 194 28-241 27-244 (310)
392 KOG2079 Vacuolar assembly/sort 97.4 0.0013 2.8E-08 60.7 9.2 102 69-176 98-202 (1206)
393 COG3204 Uncharacterized protei 97.3 0.055 1.2E-06 43.0 19.2 173 56-239 83-264 (316)
394 PF00780 CNH: CNH domain; Int 97.2 0.086 1.9E-06 43.1 22.4 147 28-185 7-173 (275)
395 KOG2444 WD40 repeat protein [G 97.2 0.0026 5.5E-08 48.2 7.8 103 70-177 70-177 (238)
396 PF14870 PSII_BNR: Photosynthe 97.2 0.093 2E-06 43.0 18.6 155 14-174 143-301 (302)
397 PHA03098 kelch-like protein; P 97.2 0.12 2.6E-06 46.9 19.7 145 28-181 295-468 (534)
398 PF12894 Apc4_WD40: Anaphase-p 97.1 0.0018 3.9E-08 36.0 5.0 33 15-49 11-43 (47)
399 PF12894 Apc4_WD40: Anaphase-p 97.1 0.0022 4.8E-08 35.6 4.9 34 146-181 11-44 (47)
400 KOG2079 Vacuolar assembly/sort 97.1 0.003 6.4E-08 58.5 8.4 103 28-132 99-202 (1206)
401 PF14727 PHTB1_N: PTHB1 N-term 97.1 0.16 3.5E-06 43.7 28.3 148 25-177 34-204 (418)
402 COG3823 Glutamine cyclotransfe 96.9 0.1 2.3E-06 39.3 14.3 104 114-240 55-160 (262)
403 PF10647 Gmad1: Lipoprotein Lp 96.9 0.16 3.5E-06 40.8 19.2 145 17-166 25-184 (253)
404 PHA03098 kelch-like protein; P 96.8 0.35 7.6E-06 44.0 19.8 106 68-180 293-417 (534)
405 PHA02790 Kelch-like protein; P 96.8 0.23 5E-06 44.3 18.1 182 28-240 272-472 (480)
406 PF15390 DUF4613: Domain of un 96.7 0.41 8.9E-06 42.2 18.5 153 16-178 20-187 (671)
407 TIGR03074 PQQ_membr_DH membran 96.7 0.58 1.3E-05 44.0 24.2 207 29-245 195-484 (764)
408 KOG2280 Vacuolar assembly/sort 96.7 0.2 4.4E-06 45.3 15.8 186 38-247 64-255 (829)
409 KOG4499 Ca2+-binding protein R 96.6 0.22 4.8E-06 38.3 17.1 136 58-212 108-263 (310)
410 PRK13684 Ycf48-like protein; P 96.6 0.38 8.1E-06 40.6 17.6 154 15-176 172-330 (334)
411 PF10647 Gmad1: Lipoprotein Lp 96.5 0.32 6.9E-06 39.1 16.3 156 148-365 25-185 (253)
412 PF10313 DUF2415: Uncharacteri 96.5 0.02 4.2E-07 30.8 5.3 32 16-47 1-34 (43)
413 TIGR02604 Piru_Ver_Nterm putat 96.4 0.32 6.9E-06 41.7 15.8 143 16-164 14-200 (367)
414 KOG1897 Damage-specific DNA bi 96.4 0.84 1.8E-05 42.9 28.9 282 15-326 306-616 (1096)
415 TIGR03118 PEPCTERM_chp_1 conse 96.4 0.38 8.2E-06 38.8 22.1 212 18-243 25-284 (336)
416 COG5167 VID27 Protein involved 96.4 0.16 3.4E-06 43.8 13.1 140 31-177 483-632 (776)
417 PF03022 MRJP: Major royal jel 96.4 0.38 8.1E-06 39.5 15.1 175 169-374 34-214 (287)
418 PHA02790 Kelch-like protein; P 96.4 0.69 1.5E-05 41.3 18.8 105 69-180 271-387 (480)
419 PF12234 Rav1p_C: RAVE protein 96.3 0.44 9.6E-06 43.2 16.0 125 149-324 32-157 (631)
420 KOG3630 Nuclear pore complex, 96.3 0.093 2E-06 49.6 12.1 116 104-239 101-229 (1405)
421 KOG2377 Uncharacterized conser 96.2 0.59 1.3E-05 39.9 15.3 106 201-362 65-170 (657)
422 PF15390 DUF4613: Domain of un 96.2 0.25 5.4E-06 43.5 13.5 150 59-238 20-186 (671)
423 KOG3630 Nuclear pore complex, 96.1 0.14 3E-06 48.5 12.3 141 59-212 101-253 (1405)
424 PF12234 Rav1p_C: RAVE protein 96.1 0.25 5.4E-06 44.7 13.4 109 21-132 35-155 (631)
425 KOG2247 WD40 repeat-containing 96.1 0.0011 2.4E-08 55.8 -0.9 147 20-175 39-186 (615)
426 KOG1900 Nuclear pore complex, 96.0 0.85 1.8E-05 44.3 16.8 153 20-178 83-273 (1311)
427 KOG2280 Vacuolar assembly/sort 95.9 0.66 1.4E-05 42.2 15.0 177 4-188 72-257 (829)
428 COG5167 VID27 Protein involved 95.9 0.36 7.8E-06 41.8 12.7 53 304-366 572-624 (776)
429 KOG1916 Nuclear protein, conta 95.9 0.014 3E-07 53.3 4.8 165 11-182 128-328 (1283)
430 COG4257 Vgb Streptogramin lyas 95.7 0.84 1.8E-05 36.3 22.4 200 18-239 64-263 (353)
431 TIGR02604 Piru_Ver_Nterm putat 95.6 0.78 1.7E-05 39.4 14.4 105 59-166 14-142 (367)
432 PF07995 GSDH: Glucose / Sorbo 95.5 1.3 2.8E-05 37.4 23.5 103 18-123 4-133 (331)
433 PF07995 GSDH: Glucose / Sorbo 95.4 1.4 3E-05 37.2 26.3 82 282-370 245-330 (331)
434 PRK10115 protease 2; Provision 95.3 2.5 5.5E-05 39.7 29.3 110 18-132 129-254 (686)
435 PF10313 DUF2415: Uncharacteri 95.3 0.13 2.8E-06 27.8 5.4 33 147-179 1-35 (43)
436 PF08728 CRT10: CRT10; InterP 95.3 2.4 5.3E-05 39.2 17.4 117 105-237 102-245 (717)
437 TIGR03074 PQQ_membr_DH membran 95.3 2.8 6.1E-05 39.7 24.4 118 70-190 194-357 (764)
438 PF07569 Hira: TUP1-like enhan 95.1 0.23 5E-06 38.8 8.9 70 303-374 20-94 (219)
439 PF14655 RAB3GAP2_N: Rab3 GTPa 95.1 0.49 1.1E-05 40.7 11.2 85 103-188 307-409 (415)
440 KOG2247 WD40 repeat-containing 95.0 0.0029 6.2E-08 53.5 -1.9 113 106-240 37-149 (615)
441 TIGR03548 mutarot_permut cycli 95.0 1.9 4.2E-05 36.3 20.4 65 114-181 72-151 (323)
442 PF08728 CRT10: CRT10; InterP 94.8 0.7 1.5E-05 42.5 11.8 115 17-132 102-245 (717)
443 KOG1916 Nuclear protein, conta 94.7 0.062 1.3E-06 49.4 5.3 74 290-374 180-264 (1283)
444 PF14781 BBS2_N: Ciliary BBSom 94.7 1 2.2E-05 31.6 13.7 72 152-240 4-83 (136)
445 PF14781 BBS2_N: Ciliary BBSom 94.5 1.1 2.4E-05 31.4 12.8 112 109-240 4-127 (136)
446 PF07569 Hira: TUP1-like enhan 94.4 0.51 1.1E-05 36.9 9.1 67 66-133 18-95 (219)
447 PRK10115 protease 2; Provision 94.2 5 0.00011 37.8 29.4 113 59-177 127-255 (686)
448 PF02333 Phytase: Phytase; In 94.2 3.2 6.9E-05 35.4 20.8 195 68-325 66-292 (381)
449 TIGR02276 beta_rpt_yvtn 40-res 94.1 0.26 5.7E-06 26.4 5.2 33 156-188 1-33 (42)
450 PF07250 Glyoxal_oxid_N: Glyox 93.9 2.4 5.1E-05 33.7 11.8 145 39-186 47-206 (243)
451 PLN00033 photosystem II stabil 93.9 3.9 8.5E-05 35.4 17.8 155 15-174 238-396 (398)
452 KOG1898 Splicing factor 3b, su 93.9 6.5 0.00014 37.8 16.1 176 39-239 854-1049(1205)
453 COG4590 ABC-type uncharacteriz 93.7 0.54 1.2E-05 40.1 8.3 162 54-240 216-388 (733)
454 PF10168 Nup88: Nuclear pore c 93.4 7 0.00015 36.9 23.5 29 103-132 84-112 (717)
455 COG3823 Glutamine cyclotransfe 93.2 3 6.5E-05 31.9 14.4 186 27-226 55-247 (262)
456 TIGR03547 muta_rot_YjhT mutatr 93.2 4.8 0.00011 34.2 21.4 11 356-366 321-331 (346)
457 KOG3616 Selective LIM binding 92.7 6.1 0.00013 36.5 13.6 70 15-88 14-83 (1636)
458 KOG1983 Tomosyn and related SN 92.6 4.6 9.9E-05 39.7 13.8 31 104-134 36-66 (993)
459 PF14870 PSII_BNR: Photosynthe 92.4 5.6 0.00012 32.9 32.7 279 15-372 16-301 (302)
460 PF14727 PHTB1_N: PTHB1 N-term 92.2 7.4 0.00016 33.9 24.0 148 69-239 36-205 (418)
461 PF05935 Arylsulfotrans: Aryls 92.1 8.5 0.00018 34.5 22.4 144 37-186 127-310 (477)
462 TIGR03118 PEPCTERM_chp_1 conse 92.1 5.8 0.00013 32.4 20.4 119 60-178 24-171 (336)
463 PF13449 Phytase-like: Esteras 91.8 7.2 0.00016 32.9 18.7 118 103-229 19-167 (326)
464 TIGR02276 beta_rpt_yvtn 40-res 91.7 0.98 2.1E-05 24.1 5.3 32 25-56 1-32 (42)
465 PF14779 BBS1: Ciliary BBSome 91.7 5.8 0.00013 31.7 17.4 70 103-174 176-255 (257)
466 COG4590 ABC-type uncharacteriz 91.7 1.1 2.5E-05 38.3 7.6 168 8-181 213-390 (733)
467 PF11715 Nup160: Nucleoporin N 91.3 1.5 3.2E-05 40.2 8.8 74 68-141 156-256 (547)
468 KOG4460 Nuclear pore complex, 91.2 10 0.00022 33.6 13.1 26 105-130 105-130 (741)
469 PF10168 Nup88: Nuclear pore c 91.0 14 0.00031 34.9 25.5 29 58-87 84-112 (717)
470 PF11715 Nup160: Nucleoporin N 90.5 2 4.3E-05 39.3 9.0 75 113-188 156-259 (547)
471 PF12768 Rax2: Cortical protei 90.3 8.9 0.00019 31.4 12.2 117 38-156 16-146 (281)
472 PF10214 Rrn6: RNA polymerase 90.3 18 0.00039 34.8 17.9 157 16-176 146-328 (765)
473 KOG2377 Uncharacterized conser 90.3 11 0.00025 32.6 19.9 120 57-179 65-187 (657)
474 KOG1900 Nuclear pore complex, 90.0 6.2 0.00013 38.9 11.6 34 288-324 240-273 (1311)
475 PF07676 PD40: WD40-like Beta 90.0 1.5 3.3E-05 23.0 4.8 30 145-174 7-38 (39)
476 PRK13684 Ycf48-like protein; P 89.8 11 0.00025 31.8 28.9 273 15-322 45-330 (334)
477 PF13449 Phytase-like: Esteras 89.8 11 0.00024 31.7 18.0 107 58-166 19-165 (326)
478 PLN02153 epithiospecifier prot 89.3 13 0.00027 31.7 21.3 105 28-135 33-169 (341)
479 KOG1983 Tomosyn and related SN 89.2 9.7 0.00021 37.5 12.6 30 16-46 36-65 (993)
480 PF12657 TFIIIC_delta: Transcr 88.4 6.6 0.00014 29.5 9.0 31 104-134 86-122 (173)
481 KOG4460 Nuclear pore complex, 88.0 6.6 0.00014 34.6 9.4 26 17-43 105-130 (741)
482 PF14761 HPS3_N: Hermansky-Pud 88.0 11 0.00023 29.2 15.8 114 116-239 29-164 (215)
483 PF14269 Arylsulfotran_2: Aryl 87.9 15 0.00031 30.6 12.7 69 18-87 146-219 (299)
484 COG1520 FOG: WD40-like repeat 87.7 17 0.00038 31.3 21.3 114 69-188 68-182 (370)
485 PLN02153 epithiospecifier prot 87.5 17 0.00036 30.9 17.4 20 161-180 88-112 (341)
486 PF14761 HPS3_N: Hermansky-Pud 87.3 12 0.00026 29.0 15.1 51 161-229 30-80 (215)
487 PRK14131 N-acetylneuraminic ac 87.2 19 0.00041 31.2 22.0 67 69-136 38-117 (376)
488 PF07676 PD40: WD40-like Beta 87.2 2.9 6.3E-05 21.9 4.8 33 10-43 3-38 (39)
489 TIGR03548 mutarot_permut cycli 87.1 17 0.00037 30.6 22.2 107 69-180 72-197 (323)
490 TIGR03606 non_repeat_PQQ dehyd 86.8 22 0.00047 31.5 14.1 58 58-115 29-90 (454)
491 PF12768 Rax2: Cortical protei 86.7 16 0.00035 29.9 13.6 95 79-178 15-124 (281)
492 COG1520 FOG: WD40-like repeat 86.3 21 0.00045 30.8 20.1 202 29-247 69-277 (370)
493 PF12657 TFIIIC_delta: Transcr 85.6 13 0.00029 27.9 9.5 35 291-325 86-123 (173)
494 PF11635 Med16: Mediator compl 85.2 37 0.0008 32.7 18.2 77 290-370 259-345 (753)
495 PF02333 Phytase: Phytase; In 84.6 25 0.00054 30.2 20.0 196 28-239 68-291 (381)
496 COG5290 IkappaB kinase complex 84.3 7.6 0.00016 36.2 8.3 100 62-164 250-354 (1243)
497 PF08801 Nucleoporin_N: Nup133 84.0 29 0.00064 30.6 15.6 31 203-239 190-220 (422)
498 PLN02193 nitrile-specifier pro 83.4 34 0.00073 30.8 16.0 105 28-136 229-354 (470)
499 PF01011 PQQ: PQQ enzyme repea 83.2 4.3 9.3E-05 21.2 4.1 28 161-188 2-29 (38)
500 smart00564 PQQ beta-propeller 81.8 4.1 8.9E-05 20.2 3.7 24 117-140 8-31 (33)
No 1
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.5e-61 Score=371.26 Aligned_cols=335 Identities=18% Similarity=0.214 Sum_probs=302.1
Q ss_pred CCeeeecCCCceeEEEEecCCCCEEEEeCCCCcEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEEcCCCeEEEEE
Q 017194 7 KPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFD 86 (375)
Q Consensus 7 ~~~~l~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i~iwd 86 (375)
+-..+.||.++|.|++|+|+ +..||+|+.|.++++||+.+..+..+.++|...|.|++|+|||+.||+|+.||+|++||
T Consensus 107 CssS~~GH~e~Vl~~~fsp~-g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwd 185 (480)
T KOG0271|consen 107 CSSSIAGHGEAVLSVQFSPT-GSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWD 185 (480)
T ss_pred eccccCCCCCcEEEEEecCC-CceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEec
Confidence 34568899999999999998 99999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcccccccccCCCcceeEEEEcC-----CCCeEEEEeCCCcEEEEeCcCceeeeeEecCcccceeEEEEeeCCCcE
Q 017194 87 VHMPASWRPLESYNYNKEEINQIVCNP-----KSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWE 161 (375)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~v~~~~~~~-----~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 161 (375)
.++++ +....+.+|...|++++|.| ..++|++++.||.++|||+..++++..+. +|+.+|+|+.|-.+| +
T Consensus 186 pktg~--~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~ls-gHT~~VTCvrwGG~g--l 260 (480)
T KOG0271|consen 186 PKTGQ--QIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLS-GHTASVTCVRWGGEG--L 260 (480)
T ss_pred CCCCC--cccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEec-cCccceEEEEEcCCc--e
Confidence 99875 45567888999999999987 56789999999999999999999999999 999999999998777 8
Q ss_pred EEEeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCc-----ccc-------------------
Q 017194 162 VISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDAD-----MLD------------------- 217 (375)
Q Consensus 162 l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-----~~~------------------- 217 (375)
+++|+.|++|++|+...|.+...++ + |...|+.++.+.+. .++
T Consensus 261 iySgS~DrtIkvw~a~dG~~~r~lk-G------------HahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~r 327 (480)
T KOG0271|consen 261 IYSGSQDRTIKVWRALDGKLCRELK-G------------HAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALER 327 (480)
T ss_pred EEecCCCceEEEEEccchhHHHhhc-c------------cchheeeeeccchhhhhccccccccccCCChHHHHHHHHHH
Confidence 9999999999999999999988887 3 57788888887431 111
Q ss_pred ------CCCCEEEEEecCCcEEEEeCCCcceeecccccCCCCCCceeecccccceee---eeeeecCCcceeEeeeeecC
Q 017194 218 ------KTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAE---MEILDQSGGKRLHLDYSVGG 288 (375)
Q Consensus 218 ------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~---~~~~~~~~~~~~~~~~~~~~ 288 (375)
..+..|++|+.|.++.+|+.....++......+...+..+.||||+++++. ..+...+.....+.+..+++
T Consensus 328 Y~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRG 407 (480)
T KOG0271|consen 328 YEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRG 407 (480)
T ss_pred HHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhh
Confidence 234569999999999999998877777777777788999999999999997 34556677788889999999
Q ss_pred CCccEEEEEEeecCCCCcEEEEecCCCeEEEEeCCCceeeeecchhhhhhhhcccccceeeeeecCCCCCcEEEeeCCCe
Q 017194 289 HTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKV 368 (375)
Q Consensus 289 ~~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~ 368 (375)
|-..|+.++|+ .|.++|++|+.|.++++|++++. ++...+.+|.+.|.++.|+| ||+.+++|+.|..
T Consensus 408 Hv~~VYqvaws---aDsRLlVS~SkDsTLKvw~V~tk---------Kl~~DLpGh~DEVf~vDwsp-DG~rV~sggkdkv 474 (480)
T KOG0271|consen 408 HVAAVYQVAWS---ADSRLLVSGSKDSTLKVWDVRTK---------KLKQDLPGHADEVFAVDWSP-DGQRVASGGKDKV 474 (480)
T ss_pred ccceeEEEEec---cCccEEEEcCCCceEEEEEeeee---------eecccCCCCCceEEEEEecC-CCceeecCCCceE
Confidence 99999999999 99999999999999999999998 77788999999999999999 9999999999999
Q ss_pred EEEEe
Q 017194 369 VKVYS 373 (375)
Q Consensus 369 v~iw~ 373 (375)
+++|.
T Consensus 475 ~~lw~ 479 (480)
T KOG0271|consen 475 LRLWR 479 (480)
T ss_pred EEeec
Confidence 99995
No 2
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=1.7e-54 Score=337.48 Aligned_cols=284 Identities=20% Similarity=0.307 Sum_probs=266.4
Q ss_pred cCCCceeEEEEecCCCCEEEEeCCCCcEEEEecccCceeeEeeecCccEEEEEEeCC--CCeEEEEcCCCeEEEEECCCC
Q 017194 13 GHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSG--NEDIIYVSSGKEVKSFDVHMP 90 (375)
Q Consensus 13 ~h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~--~~~l~~~~~d~~i~iwd~~~~ 90 (375)
|-+.+|..+.|+++ ++.||||+-+|.+++|+..+...+.++.+|...|.++.|+|. +..+++++.||++++|++.+.
T Consensus 173 gd~rPis~~~fS~d-s~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e 251 (459)
T KOG0272|consen 173 GDTRPISGCSFSRD-SKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQE 251 (459)
T ss_pred cCCCcceeeEeecC-CCeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCC
Confidence 56789999999999 899999999999999999999999999999999999999997 568999999999999999853
Q ss_pred CcccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCceeeeeEecCcccceeEEEEeeCCCcEEEEeecCCe
Q 017194 91 ASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSK 170 (375)
Q Consensus 91 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~ 170 (375)
.++..+.+|...|..++|+|+|++|++++.|.+-++||+++++.+.... +|...|.+++|.|+|. ++++|+.|..
T Consensus 252 ---~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QE-GHs~~v~~iaf~~DGS-L~~tGGlD~~ 326 (459)
T KOG0272|consen 252 ---TPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQE-GHSKGVFSIAFQPDGS-LAATGGLDSL 326 (459)
T ss_pred ---cchhhhhcchhhheeeeecCCCceeeecccccchhhcccccchhhHhhc-ccccccceeEecCCCc-eeeccCccch
Confidence 6778888999999999999999999999999999999999998888778 9999999999999999 8999999999
Q ss_pred EEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCcceeecccccC
Q 017194 171 LVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTT 250 (375)
Q Consensus 171 i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~ 250 (375)
-++||+++++++..+. + |...|.+|+|+| +|..||+|+.|++++|||++..
T Consensus 327 ~RvWDlRtgr~im~L~-g------------H~k~I~~V~fsP------NGy~lATgs~Dnt~kVWDLR~r---------- 377 (459)
T KOG0272|consen 327 GRVWDLRTGRCIMFLA-G------------HIKEILSVAFSP------NGYHLATGSSDNTCKVWDLRMR---------- 377 (459)
T ss_pred hheeecccCcEEEEec-c------------cccceeeEeECC------CceEEeecCCCCcEEEeeeccc----------
Confidence 9999999999999887 3 578999999999 8999999999999999999963
Q ss_pred CCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEecCCCeEEEEeCCCceeeee
Q 017194 251 KPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQT 330 (375)
Q Consensus 251 ~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 330 (375)
..++.+.+|..-|+.+.|+| ..|.+|+|++.|++++||...+.
T Consensus 378 ------------------------------~~ly~ipAH~nlVS~Vk~~p--~~g~fL~TasyD~t~kiWs~~~~----- 420 (459)
T KOG0272|consen 378 ------------------------------SELYTIPAHSNLVSQVKYSP--QEGYFLVTASYDNTVKIWSTRTW----- 420 (459)
T ss_pred ------------------------------ccceecccccchhhheEecc--cCCeEEEEcccCcceeeecCCCc-----
Confidence 44778999999999999994 38899999999999999999999
Q ss_pred cchhhhhhhhcccccceeeeeecCCCCCcEEEeeCCCeEEEEe
Q 017194 331 SINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYS 373 (375)
Q Consensus 331 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~iw~ 373 (375)
.+++.+.||.+.|.++.+++ |++++++++.|.++++|.
T Consensus 421 ----~~~ksLaGHe~kV~s~Dis~-d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 421 ----SPLKSLAGHEGKVISLDISP-DSQAIATSSFDRTIKLWR 458 (459)
T ss_pred ----ccchhhcCCccceEEEEecc-CCceEEEeccCceeeecc
Confidence 78899999999999999999 999999999999999995
No 3
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=1.8e-50 Score=300.76 Aligned_cols=294 Identities=14% Similarity=0.208 Sum_probs=264.8
Q ss_pred CCCeeeecCCCceeEEEEecCCCCEEEEeCCCCcEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEEcCCCeEEEE
Q 017194 6 AKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSF 85 (375)
Q Consensus 6 ~~~~~l~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i~iw 85 (375)
+..++|+||.+.|+++.|++| .+.|++++.||.+.|||.-+......++.....|..++|+|.|++++.|+-|+...||
T Consensus 46 ~~rr~LkGH~~Ki~~~~ws~D-sr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy 124 (343)
T KOG0286|consen 46 RTRRTLKGHLNKIYAMDWSTD-SRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIY 124 (343)
T ss_pred eeEEEecccccceeeeEecCC-cCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEEE
Confidence 345789999999999999999 8999999999999999999988888898889999999999999999999999999999
Q ss_pred ECCCCC---cccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCceeeeeEecCcccceeEEEEee-CCCcE
Q 017194 86 DVHMPA---SWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIP-WKPWE 161 (375)
Q Consensus 86 d~~~~~---~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~ 161 (375)
++.+.. .....+.+.+|.+.+.++.|.+| ..|++++.|.+..+||+++++.+..|. +|.+.|.++.++| +++ .
T Consensus 125 ~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD-~~ilT~SGD~TCalWDie~g~~~~~f~-GH~gDV~slsl~p~~~n-t 201 (343)
T KOG0286|consen 125 PLSTRDAEGNVRVSRELAGHTGYLSCCRFLDD-NHILTGSGDMTCALWDIETGQQTQVFH-GHTGDVMSLSLSPSDGN-T 201 (343)
T ss_pred ecccccccccceeeeeecCccceeEEEEEcCC-CceEecCCCceEEEEEcccceEEEEec-CCcccEEEEecCCCCCC-e
Confidence 998542 22455668899999999999885 488999999999999999999999999 9999999999999 555 8
Q ss_pred EEEeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCcc
Q 017194 162 VISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESEL 241 (375)
Q Consensus 162 l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~ 241 (375)
|++|+.|+..++||++.+.+.+.+.. |...|+++.|.| +|.-+++|+.|++.++||++..+
T Consensus 202 FvSg~cD~~aklWD~R~~~c~qtF~g-------------hesDINsv~ffP------~G~afatGSDD~tcRlyDlRaD~ 262 (343)
T KOG0286|consen 202 FVSGGCDKSAKLWDVRSGQCVQTFEG-------------HESDINSVRFFP------SGDAFATGSDDATCRLYDLRADQ 262 (343)
T ss_pred EEecccccceeeeeccCcceeEeecc-------------cccccceEEEcc------CCCeeeecCCCceeEEEeecCCc
Confidence 99999999999999999999999983 578999999999 89999999999999999999754
Q ss_pred eeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEecCCCeEEEEe
Q 017194 242 NISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWD 321 (375)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd 321 (375)
+... +.-..-..+|++++|| ..|++|.+|..|..+.+||
T Consensus 263 ~~a~--------------------------------------ys~~~~~~gitSv~FS---~SGRlLfagy~d~~c~vWD 301 (343)
T KOG0286|consen 263 ELAV--------------------------------------YSHDSIICGITSVAFS---KSGRLLFAGYDDFTCNVWD 301 (343)
T ss_pred EEee--------------------------------------eccCcccCCceeEEEc---ccccEEEeeecCCceeEee
Confidence 3321 1222335689999999 9999999999999999999
Q ss_pred CCCceeeeecchhhhhhhhcccccceeeeeecCCCCCcEEEeeCCCeEEEEe
Q 017194 322 CSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYS 373 (375)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~iw~ 373 (375)
.-.+ +.+..+.+|..+|.++..+| ||--+++|+.|..++||.
T Consensus 302 tlk~---------e~vg~L~GHeNRvScl~~s~-DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 302 TLKG---------ERVGVLAGHENRVSCLGVSP-DGMAVATGSWDSTLRIWA 343 (343)
T ss_pred cccc---------ceEEEeeccCCeeEEEEECC-CCcEEEecchhHheeecC
Confidence 9988 77778899999999999999 999999999999999994
No 4
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=4.1e-49 Score=287.16 Aligned_cols=279 Identities=17% Similarity=0.286 Sum_probs=249.5
Q ss_pred CCEEEEeCCCCcEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEEcCCCeEEEEECCCCCcccccccccCCCccee
Q 017194 28 PGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEIN 107 (375)
Q Consensus 28 ~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~ 107 (375)
.-+|++++.|.+|++|...+|.+..+++.....|+.+...|+++.|++++ ...|++||+++++. .++..+.+|...|+
T Consensus 10 ~viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~-~qhvRlyD~~S~np-~Pv~t~e~h~kNVt 87 (311)
T KOG0315|consen 10 PVILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAG-NQHVRLYDLNSNNP-NPVATFEGHTKNVT 87 (311)
T ss_pred ceEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhcc-CCeeEEEEccCCCC-CceeEEeccCCceE
Confidence 45899999999999999999999999998899999999999999988877 57899999998764 58889999999999
Q ss_pred EEEEcCCCCeEEEEeCCCcEEEEeCcCceeeeeEecCcccceeEEEEeeCCCcEEEEeecCCeEEEeeCCCCCcceEEec
Q 017194 108 QIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNF 187 (375)
Q Consensus 108 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~ 187 (375)
.+.|..+|+++++|++||+++|||++...+.+.++ |..+|+++..+|+.. .|++|..+|.|++||+....+...+..
T Consensus 88 aVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~--~~spVn~vvlhpnQt-eLis~dqsg~irvWDl~~~~c~~~liP 164 (311)
T KOG0315|consen 88 AVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQ--HNSPVNTVVLHPNQT-ELISGDQSGNIRVWDLGENSCTHELIP 164 (311)
T ss_pred EEEEeecCeEEEecCCCceEEEEeccCcccchhcc--CCCCcceEEecCCcc-eEEeecCCCcEEEEEccCCccccccCC
Confidence 99999999999999999999999999987777776 889999999999987 799999999999999998877766653
Q ss_pred CCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCcceeecccccCCCCCCceeeccccccee
Q 017194 188 GLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDA 267 (375)
Q Consensus 188 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~ 267 (375)
. ....|.++.+.| +|.+++.+...|..++|++-+...
T Consensus 165 e------------~~~~i~sl~v~~------dgsml~a~nnkG~cyvW~l~~~~~------------------------- 201 (311)
T KOG0315|consen 165 E------------DDTSIQSLTVMP------DGSMLAAANNKGNCYVWRLLNHQT------------------------- 201 (311)
T ss_pred C------------CCcceeeEEEcC------CCcEEEEecCCccEEEEEccCCCc-------------------------
Confidence 3 346899999999 899999999999999999986321
Q ss_pred eeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEecCCCeEEEEeCCCceeeeecchhhhhhhhcccccce
Q 017194 268 EMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKV 347 (375)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v 347 (375)
...+.++.+++.|+..+..+.+| ||+++||+++.|.+++||+.++.- +....+.+|...+
T Consensus 202 ---------~s~l~P~~k~~ah~~~il~C~lS---Pd~k~lat~ssdktv~iwn~~~~~--------kle~~l~gh~rWv 261 (311)
T KOG0315|consen 202 ---------ASELEPVHKFQAHNGHILRCLLS---PDVKYLATCSSDKTVKIWNTDDFF--------KLELVLTGHQRWV 261 (311)
T ss_pred ---------cccceEhhheecccceEEEEEEC---CCCcEEEeecCCceEEEEecCCce--------eeEEEeecCCceE
Confidence 12345667899999999999999 999999999999999999999972 4455778999999
Q ss_pred eeeeecCCCCCcEEEeeCCCeEEEEecC
Q 017194 348 NWLCTTPTESENLVVCDTSKVVKVYSIS 375 (375)
Q Consensus 348 ~~~~~~~~~~~~l~s~~~dg~v~iw~~~ 375 (375)
.+.+|+. ||+||++++.|+.+++|+++
T Consensus 262 Wdc~FS~-dg~YlvTassd~~~rlW~~~ 288 (311)
T KOG0315|consen 262 WDCAFSA-DGEYLVTASSDHTARLWDLS 288 (311)
T ss_pred Eeeeecc-CccEEEecCCCCceeecccc
Confidence 9999999 99999999999999999975
No 5
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=8.9e-48 Score=284.63 Aligned_cols=305 Identities=15% Similarity=0.227 Sum_probs=251.1
Q ss_pred CCcCCCCCeeeecCCCceeEEEEecCCCCEEEEeCCCCcEEEEeccc-----CceeeEeeecCccEEEEEEeCCCCeEEE
Q 017194 1 MTDAEAKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRS-----KDVQLVTDVGNGPVTSLCFKSGNEDIIY 75 (375)
Q Consensus 1 m~~~~~~~~~l~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~-----~~~~~~~~~~~~~v~~l~~~~~~~~l~~ 75 (375)
|++......+|++|++.|+.++..+.+.+.+++++.|.++.+|++.. |.+++.+.+|...|..+..+++|++.++
T Consensus 1 ~~e~l~l~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS 80 (315)
T KOG0279|consen 1 MQEQLVLRGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALS 80 (315)
T ss_pred CchhheeeeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEe
Confidence 67778888899999999999999998788999999999999999754 5568899999999999999999999999
Q ss_pred EcCCCeEEEEECCCCCcccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCceeeeeEecCcccceeEEEEe
Q 017194 76 VSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFI 155 (375)
Q Consensus 76 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~ 155 (375)
++.|+.+++||+.++ +....+.+|...|.+++|++|++.|++|+.|.+|++|++........-...+++.|.+++|+
T Consensus 81 ~swD~~lrlWDl~~g---~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~ck~t~~~~~~~~WVscvrfs 157 (315)
T KOG0279|consen 81 ASWDGTLRLWDLATG---ESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCKYTIHEDSHREWVSCVRFS 157 (315)
T ss_pred ccccceEEEEEecCC---cEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeecccEEEEEecCCCcCcEEEEEEc
Confidence 999999999999976 55667788999999999999999999999999999999876555444442338899999999
Q ss_pred eC--CCcEEEEeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEE
Q 017194 156 PW--KPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVD 233 (375)
Q Consensus 156 ~~--~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~ 233 (375)
|+ .+ ++++++.|++|++||+++.+....+. + |...++.++++| ||.++++|+.||.+.
T Consensus 158 P~~~~p-~Ivs~s~DktvKvWnl~~~~l~~~~~-g------------h~~~v~t~~vSp------DGslcasGgkdg~~~ 217 (315)
T KOG0279|consen 158 PNESNP-IIVSASWDKTVKVWNLRNCQLRTTFI-G------------HSGYVNTVTVSP------DGSLCASGGKDGEAM 217 (315)
T ss_pred CCCCCc-EEEEccCCceEEEEccCCcchhhccc-c------------ccccEEEEEECC------CCCEEecCCCCceEE
Confidence 98 45 79999999999999999887766665 4 678999999999 899999999999999
Q ss_pred EEeCCCcceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEecC
Q 017194 234 VINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGN 313 (375)
Q Consensus 234 i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~ 313 (375)
+||++.++ .++.+ +|...|.+++|+ |+...|+.+ .
T Consensus 218 LwdL~~~k----------------------------------------~lysl-~a~~~v~sl~fs---pnrywL~~a-t 252 (315)
T KOG0279|consen 218 LWDLNEGK----------------------------------------NLYSL-EAFDIVNSLCFS---PNRYWLCAA-T 252 (315)
T ss_pred EEEccCCc----------------------------------------eeEec-cCCCeEeeEEec---CCceeEeec-c
Confidence 99999753 22333 568899999999 776555554 4
Q ss_pred CCeEEEEeCCCceeeeecchhhhhhhhcccccceeeeeecCCCCCcEEEeeCCCeEEEEec
Q 017194 314 DKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSI 374 (375)
Q Consensus 314 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~iw~~ 374 (375)
+..|+|||+.+...+........-.....-.....+++|++ ||..|++|..|+.|++|.+
T Consensus 253 ~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~-dG~tLf~g~td~~irv~qv 312 (315)
T KOG0279|consen 253 ATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSA-DGQTLFAGYTDNVIRVWQV 312 (315)
T ss_pred CCceEEEeccchhhhhhccccccccccccCCcEEEEEEEcC-CCcEEEeeecCCcEEEEEe
Confidence 55699999999843311100000001111233467789998 9999999999999999986
No 6
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.5e-48 Score=300.98 Aligned_cols=287 Identities=18% Similarity=0.210 Sum_probs=236.8
Q ss_pred eeEeeecCccEEEEEEeCCCCeEEEEcCCCeEEEEECCCCCcccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEE
Q 017194 51 QLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKII 130 (375)
Q Consensus 51 ~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw 130 (375)
-..+.+|.++|.+++|+|+|..|++|+.|.++++||+.+. .+..+.++|...|.+++|+||++.||+|+.||+|++|
T Consensus 108 ssS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~Te---Tp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lw 184 (480)
T KOG0271|consen 108 SSSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTE---TPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLW 184 (480)
T ss_pred ccccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCC---CcceeecCCccEEEEEEECCCcchhhccccCCeEEEe
Confidence 4556789999999999999999999999999999999974 5667788899999999999999999999999999999
Q ss_pred eCcCcee-eeeEecCcccceeEEEEeeC-----CCcEEEEeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCc
Q 017194 131 DIRQHCL-YKSLRAGHSSICSSVQFIPW-----KPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAF 204 (375)
Q Consensus 131 d~~~~~~-~~~~~~~~~~~v~~~~~~~~-----~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (375)
|.++++. .+.+. +|...|++++|.|- .+ +|++++.||.|+|||+..+.++..+. + |..+
T Consensus 185 dpktg~~~g~~l~-gH~K~It~Lawep~hl~p~~r-~las~skDg~vrIWd~~~~~~~~~ls-g------------HT~~ 249 (480)
T KOG0271|consen 185 DPKTGQQIGRALR-GHKKWITALAWEPLHLVPPCR-RLASSSKDGSVRIWDTKLGTCVRTLS-G------------HTAS 249 (480)
T ss_pred cCCCCCccccccc-CcccceeEEeecccccCCCcc-ceecccCCCCEEEEEccCceEEEEec-c------------Cccc
Confidence 9998865 46777 99999999999763 34 79999999999999999988888876 4 6789
Q ss_pred eeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCcceeecccccCC----------CCCCceeecccccc---------
Q 017194 205 VHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTK----------PLKGSQSTSKVNIR--------- 265 (375)
Q Consensus 205 v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~----------~~~~~~~~s~~g~~--------- 265 (375)
|+++.|-- ..++++|+.|++|++|+...+.....+..+.. ...+.-+|.|.|++
T Consensus 250 VTCvrwGG-------~gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~ 322 (480)
T KOG0271|consen 250 VTCVRWGG-------EGLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQK 322 (480)
T ss_pred eEEEEEcC-------CceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHH
Confidence 99999974 68999999999999999988665544433211 00111123333332
Q ss_pred ----------------eee---eeeeecCC-cceeEeeeeecCCCccEEEEEEeecCCCCcEEEEecCCCeEEEEeCCCc
Q 017194 266 ----------------DAE---MEILDQSG-GKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRF 325 (375)
Q Consensus 266 ----------------~~~---~~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd~~~~ 325 (375)
+.. ....-.+. ....+++..+.+|..-|+.+.|| ||++++|+++.|..|++|+.+++
T Consensus 323 ~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fS---Pd~r~IASaSFDkSVkLW~g~tG 399 (480)
T KOG0271|consen 323 KALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFS---PDGRYIASASFDKSVKLWDGRTG 399 (480)
T ss_pred HHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEEC---CCccEEEEeecccceeeeeCCCc
Confidence 211 00111122 22334667889999999999999 99999999999999999999999
Q ss_pred eeeeecchhhhhhhhcccccceeeeeecCCCCCcEEEeeCCCeEEEEecC
Q 017194 326 QGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSIS 375 (375)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~iw~~~ 375 (375)
+.+..+.+|-..|..++|+. |.++|++|+.|.++++|++.
T Consensus 400 ---------k~lasfRGHv~~VYqvawsa-DsRLlVS~SkDsTLKvw~V~ 439 (480)
T KOG0271|consen 400 ---------KFLASFRGHVAAVYQVAWSA-DSRLLVSGSKDSTLKVWDVR 439 (480)
T ss_pred ---------chhhhhhhccceeEEEEecc-CccEEEEcCCCceEEEEEee
Confidence 88999999999999999998 99999999999999999974
No 7
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=8.2e-49 Score=305.82 Aligned_cols=252 Identities=17% Similarity=0.188 Sum_probs=234.2
Q ss_pred CCCCCeeeecCCCceeEEEEecC-CCCEEEEeCCCCcEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEEcCCCeE
Q 017194 4 AEAKPRRLRGHKATATCCIASRD-RPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEV 82 (375)
Q Consensus 4 ~~~~~~~l~~h~~~i~~~~~~~~-~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i 82 (375)
+...+.+|.||++.|.++.|+|. ++..+|||+.||++++|++++..++..+.+|...|..++|+|+|++|++++.|.+-
T Consensus 206 ~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tW 285 (459)
T KOG0272|consen 206 QCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTW 285 (459)
T ss_pred CcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCcchhhhhcchhhheeeeecCCCceeeecccccch
Confidence 45678899999999999999998 46789999999999999999999999999999999999999999999999999999
Q ss_pred EEEECCCCCcccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCceeeeeEecCcccceeEEEEeeCCCcEE
Q 017194 83 KSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEV 162 (375)
Q Consensus 83 ~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l 162 (375)
++||++++. .+....+|...|.+++|.|||.++++|+.|..-+|||+++++++..+. +|..+|.+++|+|+|- .+
T Consensus 286 RlWD~~tk~---ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~-gH~k~I~~V~fsPNGy-~l 360 (459)
T KOG0272|consen 286 RLWDLETKS---ELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMFLA-GHIKEILSVAFSPNGY-HL 360 (459)
T ss_pred hhcccccch---hhHhhcccccccceeEecCCCceeeccCccchhheeecccCcEEEEec-ccccceeeEeECCCce-EE
Confidence 999999754 344456789999999999999999999999999999999999999999 9999999999999997 89
Q ss_pred EEeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCcce
Q 017194 163 ISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELN 242 (375)
Q Consensus 163 ~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~ 242 (375)
++|+.|++++|||++..+.+..+.. |..-|..+.|+|. .|.+|++++.|+++++|..++.
T Consensus 361 ATgs~Dnt~kVWDLR~r~~ly~ipA-------------H~nlVS~Vk~~p~-----~g~fL~TasyD~t~kiWs~~~~-- 420 (459)
T KOG0272|consen 361 ATGSSDNTCKVWDLRMRSELYTIPA-------------HSNLVSQVKYSPQ-----EGYFLVTASYDNTVKIWSTRTW-- 420 (459)
T ss_pred eecCCCCcEEEeeecccccceeccc-------------ccchhhheEeccc-----CCeEEEEcccCcceeeecCCCc--
Confidence 9999999999999999888887764 5788999999985 6999999999999999999874
Q ss_pred eecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEecCCCeEEEEe
Q 017194 243 ISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWD 321 (375)
Q Consensus 243 ~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd 321 (375)
+++..+.||.+.|.+++++ +|+.++++++.|+++++|.
T Consensus 421 --------------------------------------~~~ksLaGHe~kV~s~Dis---~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 421 --------------------------------------SPLKSLAGHEGKVISLDIS---PDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred --------------------------------------ccchhhcCCccceEEEEec---cCCceEEEeccCceeeecc
Confidence 6778999999999999999 9999999999999999995
No 8
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=4.8e-47 Score=290.62 Aligned_cols=297 Identities=19% Similarity=0.245 Sum_probs=271.5
Q ss_pred CCCeeeecCCCceeEEEEecCCCCEEEEeCCCCcEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEEcCCCeEEEE
Q 017194 6 AKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSF 85 (375)
Q Consensus 6 ~~~~~l~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i~iw 85 (375)
.+...+.+|..+|+.+-|+|+ -..++++++|++|++||..+++....+++|.+.+..++|+..|+++++++.|-.+++|
T Consensus 99 ~l~~~l~g~r~~vt~v~~hp~-~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LW 177 (406)
T KOG0295|consen 99 NLVQKLAGHRSSVTRVIFHPS-EALVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLW 177 (406)
T ss_pred CchhhhhccccceeeeeeccC-ceEEEEecCCceEEEEEccchhhhhhhhccccceeEEEEecCccEEEecCCccchhhe
Confidence 345667889999999999999 7889999999999999999999999999999999999999999999999999999999
Q ss_pred ECCCCCcccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCceeeeeEecCcccceeEEEEeeCCCcEEEEe
Q 017194 86 DVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISG 165 (375)
Q Consensus 86 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~ 165 (375)
|..+ ..+.++...+|+..|.++.|-|.|.+|++++.|.+|+.|++.++-++.+|. +|...|..++.+.||. +++++
T Consensus 178 d~~~--~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~-~h~ewvr~v~v~~DGt-i~As~ 253 (406)
T KOG0295|consen 178 DFDT--FFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFP-GHSEWVRMVRVNQDGT-IIASC 253 (406)
T ss_pred eHHH--HHHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecccceeEEecc-CchHhEEEEEecCCee-EEEec
Confidence 9985 356777788899999999999999999999999999999999999999999 9999999999999998 89999
Q ss_pred ecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCcccc---------CCCCEEEEEecCCcEEEEe
Q 017194 166 GLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLD---------KTNKICVVAKGDGVVDVIN 236 (375)
Q Consensus 166 ~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~---------~~~~~l~~~~~dg~i~i~d 236 (375)
+.|.++++|-+.++++...+.. |..+|.+++|.|...++ ..+.++.+++.|++|++||
T Consensus 254 s~dqtl~vW~~~t~~~k~~lR~-------------hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wd 320 (406)
T KOG0295|consen 254 SNDQTLRVWVVATKQCKAELRE-------------HEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWD 320 (406)
T ss_pred CCCceEEEEEeccchhhhhhhc-------------cccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEe
Confidence 9999999999999977766653 46789999998875431 1246999999999999999
Q ss_pred CCCcceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEecCCCe
Q 017194 237 IESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKL 316 (375)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~dg~ 316 (375)
+.++ .++.++.+|...|..++|+ |.|+||+++.+|++
T Consensus 321 v~tg----------------------------------------~cL~tL~ghdnwVr~~af~---p~Gkyi~ScaDDkt 357 (406)
T KOG0295|consen 321 VSTG----------------------------------------MCLFTLVGHDNWVRGVAFS---PGGKYILSCADDKT 357 (406)
T ss_pred ccCC----------------------------------------eEEEEEecccceeeeeEEc---CCCeEEEEEecCCc
Confidence 9985 6788999999999999999 99999999999999
Q ss_pred EEEEeCCCceeeeecchhhhhhhhcccccceeeeeecCCCCCcEEEeeCCCeEEEEe
Q 017194 317 VKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYS 373 (375)
Q Consensus 317 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~iw~ 373 (375)
+++||+++. .++..+..|..-++++.|+. +..++++|+-|..+++|.
T Consensus 358 lrvwdl~~~---------~cmk~~~ah~hfvt~lDfh~-~~p~VvTGsVdqt~KvwE 404 (406)
T KOG0295|consen 358 LRVWDLKNL---------QCMKTLEAHEHFVTSLDFHK-TAPYVVTGSVDQTVKVWE 404 (406)
T ss_pred EEEEEeccc---------eeeeccCCCcceeEEEecCC-CCceEEeccccceeeeee
Confidence 999999999 67778889999999999987 667999999999999996
No 9
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=3.9e-45 Score=292.97 Aligned_cols=351 Identities=17% Similarity=0.188 Sum_probs=282.0
Q ss_pred CcCCCCCeeeecCCCceeEEEEecCCCCEEEEeCCCCcEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEEcCCCe
Q 017194 2 TDAEAKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKE 81 (375)
Q Consensus 2 ~~~~~~~~~l~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~ 81 (375)
-+++..+..+.||...|++++|-|...-.++||++|++|.+|+-...+...++..|..-|+++.|+|||.++++++.||+
T Consensus 134 ~DSG~SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgk 213 (603)
T KOG0318|consen 134 WDSGNSVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGK 213 (603)
T ss_pred ecCCCccceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEecCCcc
Confidence 35777888999999999999999987778999999999999997777778888899999999999999999999999999
Q ss_pred EEEEECCCCCcccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCceeee----------------------
Q 017194 82 VKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYK---------------------- 139 (375)
Q Consensus 82 i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~---------------------- 139 (375)
+.+||=.+++....+..-.+|++.|..++|+||++.+++++.|.+++|||+.+.++++
T Consensus 214 i~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~l 293 (603)
T KOG0318|consen 214 IYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHL 293 (603)
T ss_pred EEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeE
Confidence 9999999988877777777999999999999999999999999999999998665444
Q ss_pred ---------------------eEecCcccceeEEEEeeCCCcEEEEeecCCeEEEeeCCCCCcce-----------EEec
Q 017194 140 ---------------------SLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNK-----------IVNF 187 (375)
Q Consensus 140 ---------------------~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~-----------~~~~ 187 (375)
.+. +|...|+++..+|+++ .|++|+.||.|.-||..++..-+ .+..
T Consensus 294 ItVSl~G~in~ln~~d~~~~~~i~-GHnK~ITaLtv~~d~~-~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~ 371 (603)
T KOG0318|consen 294 ITVSLSGTINYLNPSDPSVLKVIS-GHNKSITALTVSPDGK-TIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAA 371 (603)
T ss_pred EEEEcCcEEEEecccCCChhheec-ccccceeEEEEcCCCC-EEEeeccCceEEEEecCCccccccccccccceEEEEee
Confidence 334 7999999999999998 79999999999999997654321 1110
Q ss_pred CC-CC-------------------C---------CCCCCccc----------------------------CCCceeEEee
Q 017194 188 GL-PE-------------------N---------NGNAGQCY----------------------------NPAFVHAIAI 210 (375)
Q Consensus 188 ~~-~~-------------------~---------~~~~~~~~----------------------------~~~~v~~~~~ 210 (375)
.. .+ . .+....+. -.....++++
T Consensus 372 ~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv 451 (603)
T KOG0318|consen 372 SESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAV 451 (603)
T ss_pred cCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEE
Confidence 00 00 0 00000000 0011234555
Q ss_pred cCCccccCCCCEEEEEecCCcEEEEeCCCccee-ecccccCCCCCCceeecccccceeee------eeeecCCcceeEee
Q 017194 211 PDADMLDKTNKICVVAKGDGVVDVINIESELNI-SRSKSTTKPLKGSQSTSKVNIRDAEM------EILDQSGGKRLHLD 283 (375)
Q Consensus 211 ~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~-~~~~~~~~~~~~~~~~s~~g~~~~~~------~~~~~~~~~~~~~~ 283 (375)
+| ++..+++|+.||.|++|.+...... .........+++.+++|||+.+++.. -.++...... ..
T Consensus 452 ~~------~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~--~~ 523 (603)
T KOG0318|consen 452 SP------DGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASREV--KT 523 (603)
T ss_pred cC------CCCEEEEecccceEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEeccCCcEEEEEcccCce--ec
Confidence 55 8999999999999999999986643 33556677889999999999999972 2233333222 33
Q ss_pred eeecCCCccEEEEEEeecCCCCcEEEEecCCCeEEEEeCCCceeeeecchhhhhhhhcccccceeeeeecCCCCCcEEEe
Q 017194 284 YSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVC 363 (375)
Q Consensus 284 ~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~ 363 (375)
....-|...|.+++|+ |+..++|+|+-|-.|.||+++... +.+.....|...|+.+.|- +...+++.
T Consensus 524 ~~w~FHtakI~~~aWs---P~n~~vATGSlDt~Viiysv~kP~--------~~i~iknAH~~gVn~v~wl--de~tvvSs 590 (603)
T KOG0318|consen 524 NRWAFHTAKINCVAWS---PNNKLVATGSLDTNVIIYSVKKPA--------KHIIIKNAHLGGVNSVAWL--DESTVVSS 590 (603)
T ss_pred ceeeeeeeeEEEEEeC---CCceEEEeccccceEEEEEccChh--------hheEeccccccCceeEEEe--cCceEEec
Confidence 3455689999999999 999999999999999999999874 4455666799999999996 45689999
Q ss_pred eCCCeEEEEecC
Q 017194 364 DTSKVVKVYSIS 375 (375)
Q Consensus 364 ~~dg~v~iw~~~ 375 (375)
+.|..|++|+++
T Consensus 591 G~Da~iK~W~v~ 602 (603)
T KOG0318|consen 591 GQDANIKVWNVT 602 (603)
T ss_pred cCcceeEEeccc
Confidence 999999999974
No 10
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=4.6e-47 Score=301.01 Aligned_cols=295 Identities=16% Similarity=0.234 Sum_probs=262.1
Q ss_pred CCCeeeecCCCceeEEEEecCCCCEEEEeCCCCcEEEEeccc-CceeeEeeecCccEEEEEEeCCCCeEEEEcCCCeEEE
Q 017194 6 AKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRS-KDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKS 84 (375)
Q Consensus 6 ~~~~~l~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~-~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i~i 84 (375)
+.+..+.||+..|+++.|.|..+.+|++++.|+.|+||++.. +.+++++.+|..+|.+++|+++|..+++++.|+.|++
T Consensus 205 k~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKl 284 (503)
T KOG0282|consen 205 KLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKL 284 (503)
T ss_pred hheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceeeee
Confidence 456788999999999999995589999999999999999876 8899999999999999999999999999999999999
Q ss_pred EECCCCCcccccccccCCCcceeEEEEcCCC-CeEEEEeCCCcEEEEeCcCceeeeeEecCcccceeEEEEeeCCCcEEE
Q 017194 85 FDVHMPASWRPLESYNYNKEEINQIVCNPKS-SFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVI 163 (375)
Q Consensus 85 wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~ 163 (375)
||+++|+....+.. ...+.++.|.|++ +.+++|+.|+.|+.||+++++.++.+. .|-+.|..+.|-++|. .++
T Consensus 285 wDtETG~~~~~f~~----~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd-~hLg~i~~i~F~~~g~-rFi 358 (503)
T KOG0282|consen 285 WDTETGQVLSRFHL----DKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYD-RHLGAILDITFVDEGR-RFI 358 (503)
T ss_pred eccccceEEEEEec----CCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHH-hhhhheeeeEEccCCc-eEe
Confidence 99999987766665 5678999999988 789999999999999999999999999 8999999999999999 799
Q ss_pred EeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCccee
Q 017194 164 SGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNI 243 (375)
Q Consensus 164 ~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~ 243 (375)
+.+.|+++++|+.+.+-+++.+... ......++..+| ++++++.-+.|+.|.+|.+....
T Consensus 359 ssSDdks~riWe~~~~v~ik~i~~~------------~~hsmP~~~~~P------~~~~~~aQs~dN~i~ifs~~~~~-- 418 (503)
T KOG0282|consen 359 SSSDDKSVRIWENRIPVPIKNIADP------------EMHTMPCLTLHP------NGKWFAAQSMDNYIAIFSTVPPF-- 418 (503)
T ss_pred eeccCccEEEEEcCCCccchhhcch------------hhccCcceecCC------CCCeehhhccCceEEEEeccccc--
Confidence 9999999999999987776655433 235677888988 89999999999999999976421
Q ss_pred ecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCC--ccEEEEEEeecCCCCcEEEEecCCCeEEEEe
Q 017194 244 SRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHT--AAASCVAFSMFGERGKYLISGGNDKLVKVWD 321 (375)
Q Consensus 244 ~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd 321 (375)
.......+.+|. +.-..+.|| |||.+|++|+.||.+.+||
T Consensus 419 -----------------------------------r~nkkK~feGh~vaGys~~v~fS---pDG~~l~SGdsdG~v~~wd 460 (503)
T KOG0282|consen 419 -----------------------------------RLNKKKRFEGHSVAGYSCQVDFS---PDGRTLCSGDSDGKVNFWD 460 (503)
T ss_pred -----------------------------------ccCHhhhhcceeccCceeeEEEc---CCCCeEEeecCCccEEEee
Confidence 123334667774 456678899 9999999999999999999
Q ss_pred CCCceeeeecchhhhhhhhcccccceeeeeecCCCCCcEEEeeCCCeEEEEe
Q 017194 322 CSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYS 373 (375)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~iw~ 373 (375)
.++. +++..+..|.+++..+.|+|.....+|+|+.||.|++|+
T Consensus 461 wkt~---------kl~~~lkah~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 461 WKTT---------KLVSKLKAHDQPCIGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred chhh---------hhhhccccCCcceEEEEecCCCcceeEecccCceeEecC
Confidence 9998 889999999999999999998888999999999999996
No 11
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=5e-45 Score=279.24 Aligned_cols=298 Identities=18% Similarity=0.293 Sum_probs=259.3
Q ss_pred CCCCCeeeecCCCceeEEEEecCCCCEEEEeCCCCcEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEEcCCCeEE
Q 017194 4 AEAKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVK 83 (375)
Q Consensus 4 ~~~~~~~l~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i~ 83 (375)
..+.-+.++||.+.|.|+++.|- +++|++|+.|++|+|||+.+|+...++.+|-..|..+++++...|+++++.|+.|+
T Consensus 140 pwKl~rVi~gHlgWVr~vavdP~-n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VK 218 (460)
T KOG0285|consen 140 PWKLYRVISGHLGWVRSVAVDPG-NEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVK 218 (460)
T ss_pred cceehhhhhhccceEEEEeeCCC-ceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeE
Confidence 34566788999999999999998 89999999999999999999999999999999999999999999999999999999
Q ss_pred EEECCCCCcccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCceeeeeEecCcccceeEEEEeeCCCcEEE
Q 017194 84 SFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVI 163 (375)
Q Consensus 84 iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~ 163 (375)
.||++. .+.+..+.+|-..|.+++.+|.-..|++|+.|.++++||+++...+..+. +|..+|..+.+.|-++ .++
T Consensus 219 CwDLe~---nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~-GH~~~V~~V~~~~~dp-qvi 293 (460)
T KOG0285|consen 219 CWDLEY---NKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLS-GHTNPVASVMCQPTDP-QVI 293 (460)
T ss_pred EEechh---hhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEec-CCCCcceeEEeecCCC-ceE
Confidence 999995 46778888999999999999999999999999999999999999999999 9999999999999888 699
Q ss_pred EeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCccee
Q 017194 164 SGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNI 243 (375)
Q Consensus 164 ~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~ 243 (375)
+|+.|++|++||++.++....+.. |...+.+++.+| ....+++++.| .|+-|++..+
T Consensus 294 t~S~D~tvrlWDl~agkt~~tlt~-------------hkksvral~lhP------~e~~fASas~d-nik~w~~p~g--- 350 (460)
T KOG0285|consen 294 TGSHDSTVRLWDLRAGKTMITLTH-------------HKKSVRALCLHP------KENLFASASPD-NIKQWKLPEG--- 350 (460)
T ss_pred EecCCceEEEeeeccCceeEeeec-------------ccceeeEEecCC------chhhhhccCCc-cceeccCCcc---
Confidence 999999999999999998887763 578899999999 68888888887 6899999864
Q ss_pred ecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEecCCCeEEEEeCC
Q 017194 244 SRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCS 323 (375)
Q Consensus 244 ~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd~~ 323 (375)
..+..+.+|..-|++++.. .| .++++|+++|.+.+||.+
T Consensus 351 -------------------------------------~f~~nlsgh~~iintl~~n---sD-~v~~~G~dng~~~fwdwk 389 (460)
T KOG0285|consen 351 -------------------------------------EFLQNLSGHNAIINTLSVN---SD-GVLVSGGDNGSIMFWDWK 389 (460)
T ss_pred -------------------------------------chhhccccccceeeeeeec---cC-ceEEEcCCceEEEEEecC
Confidence 3444688999999999987 55 489999999999999999
Q ss_pred CceeeeecchhhhhhhhcccccceeeeeecCCCCCcEEEeeCCCeEEEEe
Q 017194 324 RFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYS 373 (375)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~iw~ 373 (375)
++...+........ ........|.+.+|.. .|..|++|..|.+|++|.
T Consensus 390 sg~nyQ~~~t~vqp-GSl~sEagI~as~fDk-tg~rlit~eadKtIk~~k 437 (460)
T KOG0285|consen 390 SGHNYQRGQTIVQP-GSLESEAGIFASCFDK-TGSRLITGEADKTIKMYK 437 (460)
T ss_pred cCcccccccccccC-CccccccceeEEeecc-cCceEEeccCCcceEEEe
Confidence 98543211000000 0112345788889987 788999999999999996
No 12
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=1.5e-46 Score=291.95 Aligned_cols=282 Identities=18% Similarity=0.240 Sum_probs=252.1
Q ss_pred CCceeEEEEecCCCCEEEEeCCCCcEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEEcCCCeEEEEECCCCCccc
Q 017194 15 KATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWR 94 (375)
Q Consensus 15 ~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~ 94 (375)
+-+|..+.|.|+ |+.|++|+..|...+|+..+-.....++.|..+|.++.|++++.++++|..+|.|++|+... .
T Consensus 96 kc~V~~v~WtPe-GRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnm----n 170 (464)
T KOG0284|consen 96 KCPVNVVRWTPE-GRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNM----N 170 (464)
T ss_pred ccceeeEEEcCC-CceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccch----h
Confidence 357999999999 89999999999999999876666677789999999999999999999999999999999873 3
Q ss_pred ccccccCC-CcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCceeeeeEecCcccceeEEEEeeCCCcEEEEeecCCeEEE
Q 017194 95 PLESYNYN-KEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVM 173 (375)
Q Consensus 95 ~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~ 173 (375)
.++.+..| ...|++++|+|+...++++++||+|+|||....+....+. +|.-.|.+++|+|... ++++++.|..|++
T Consensus 171 nVk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~-GHgwdVksvdWHP~kg-LiasgskDnlVKl 248 (464)
T KOG0284|consen 171 NVKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLR-GHGWDVKSVDWHPTKG-LIASGSKDNLVKL 248 (464)
T ss_pred hhHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheec-cCCCCcceeccCCccc-eeEEccCCceeEe
Confidence 34444444 4899999999999999999999999999999988888888 9999999999999988 8999999999999
Q ss_pred eeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCcceeecccccCCCC
Q 017194 174 WDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPL 253 (375)
Q Consensus 174 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~ 253 (375)
||.+++.++.++.. |...|..+.|+| ++++|++++.|..+++||+++.
T Consensus 249 WDprSg~cl~tlh~-------------HKntVl~~~f~~------n~N~Llt~skD~~~kv~DiR~m------------- 296 (464)
T KOG0284|consen 249 WDPRSGSCLATLHG-------------HKNTVLAVKFNP------NGNWLLTGSKDQSCKVFDIRTM------------- 296 (464)
T ss_pred ecCCCcchhhhhhh-------------ccceEEEEEEcC------CCCeeEEccCCceEEEEehhHh-------------
Confidence 99999999988863 578899999999 7999999999999999999963
Q ss_pred CCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEecCCCeEEEEeCCCceeeeecch
Q 017194 254 KGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSIN 333 (375)
Q Consensus 254 ~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 333 (375)
+.+..+++|+..|++++|+| -...+|.+|+.||.|..|.+...+
T Consensus 297 ---------------------------kEl~~~r~Hkkdv~~~~WhP--~~~~lftsgg~Dgsvvh~~v~~~~------- 340 (464)
T KOG0284|consen 297 ---------------------------KELFTYRGHKKDVTSLTWHP--LNESLFTSGGSDGSVVHWVVGLEE------- 340 (464)
T ss_pred ---------------------------HHHHHhhcchhhheeecccc--ccccceeeccCCCceEEEeccccc-------
Confidence 45568889999999999997 355689999999999999998543
Q ss_pred hhhhhhhcccccceeeeeecCCCCCcEEEeeCCCeEEEEe
Q 017194 334 NDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYS 373 (375)
Q Consensus 334 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~iw~ 373 (375)
++.....+|...|++++|+| -|.+|++|+.|.++++|.
T Consensus 341 -p~~~i~~AHd~~iwsl~~hP-lGhil~tgsnd~t~rfw~ 378 (464)
T KOG0284|consen 341 -PLGEIPPAHDGEIWSLAYHP-LGHILATGSNDRTVRFWT 378 (464)
T ss_pred -cccCCCcccccceeeeeccc-cceeEeecCCCcceeeec
Confidence 55556678999999999999 899999999999999996
No 13
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=1.2e-43 Score=261.77 Aligned_cols=297 Identities=17% Similarity=0.194 Sum_probs=247.4
Q ss_pred CCCCeeeecCCCceeEEEEecCCCCEEEEeCCCCcEEEEecccC---ceeeEe-eecCccEEEEEEeCCCCeEEEEcCCC
Q 017194 5 EAKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSK---DVQLVT-DVGNGPVTSLCFKSGNEDIIYVSSGK 80 (375)
Q Consensus 5 ~~~~~~l~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~---~~~~~~-~~~~~~v~~l~~~~~~~~l~~~~~d~ 80 (375)
...++.+++|++.|..++|+|-.|..|||++.|+.|++|+...+ .+...+ .+|+..|.+++|+|.|++|++++.|.
T Consensus 4 l~~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~ 83 (312)
T KOG0645|consen 4 LILEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDA 83 (312)
T ss_pred ceeEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccc
Confidence 34578899999999999999975679999999999999998853 333334 36999999999999999999999999
Q ss_pred eEEEEECCCCCcccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCc---eeeeeEecCcccceeEEEEeeC
Q 017194 81 EVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQH---CLYKSLRAGHSSICSSVQFIPW 157 (375)
Q Consensus 81 ~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~---~~~~~~~~~~~~~v~~~~~~~~ 157 (375)
++.||.-..+ ..+.+..+++|+..|.+++|+++|++||+++.|..|.||.+..+ ++...++ .|...|..+.|+|.
T Consensus 84 t~~Iw~k~~~-efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~-~HtqDVK~V~WHPt 161 (312)
T KOG0645|consen 84 TVVIWKKEDG-EFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQ-EHTQDVKHVIWHPT 161 (312)
T ss_pred eEEEeecCCC-ceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeec-cccccccEEEEcCC
Confidence 9999997644 46788999999999999999999999999999999999998743 5677888 99999999999998
Q ss_pred CCcEEEEeecCCeEEEeeCCC-C--CcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEE
Q 017194 158 KPWEVISGGLDSKLVMWDFSK-G--RPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDV 234 (375)
Q Consensus 158 ~~~~l~~~~~d~~i~~wd~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i 234 (375)
.. +|++++.|.+|++|+-.. . .+..++.. |...|.+++|.+ .|..|++++.|++++|
T Consensus 162 ~d-lL~S~SYDnTIk~~~~~~dddW~c~~tl~g-------------~~~TVW~~~F~~------~G~rl~s~sdD~tv~I 221 (312)
T KOG0645|consen 162 ED-LLFSCSYDNTIKVYRDEDDDDWECVQTLDG-------------HENTVWSLAFDN------IGSRLVSCSDDGTVSI 221 (312)
T ss_pred cc-eeEEeccCCeEEEEeecCCCCeeEEEEecC-------------ccceEEEEEecC------CCceEEEecCCcceEe
Confidence 87 899999999999998762 2 35556552 456899999999 7999999999999999
Q ss_pred EeCCCcceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEecCC
Q 017194 235 INIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGND 314 (375)
Q Consensus 235 ~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~d 314 (375)
|...+. --.-|..+++.++|. ...|++++.|
T Consensus 222 w~~~~~--------------------------------------------~~~~~sr~~Y~v~W~-----~~~IaS~ggD 252 (312)
T KOG0645|consen 222 WRLYTD--------------------------------------------LSGMHSRALYDVPWD-----NGVIASGGGD 252 (312)
T ss_pred eeeccC--------------------------------------------cchhcccceEeeeec-----ccceEeccCC
Confidence 997642 122467889999985 3489999999
Q ss_pred CeEEEEeCCCceeeeecchhhh-hhhhcccccceeeeeecCCCCCcEEEeeCCCeEEEEecC
Q 017194 315 KLVKVWDCSRFQGVQTSINNDL-LIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSIS 375 (375)
Q Consensus 315 g~i~iwd~~~~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~iw~~~ 375 (375)
+.|++|.-...... +.-++ ......|...|+++.|.|...+.|++++.||.|++|.++
T Consensus 253 ~~i~lf~~s~~~d~---p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 253 DAIRLFKESDSPDE---PSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFWELE 311 (312)
T ss_pred CEEEEEEecCCCCC---chHHHHHhhhcccccccceEEEcCCCCCceeecCCCceEEEEEec
Confidence 99999987753111 01122 234557999999999999557899999999999999874
No 14
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=3.6e-44 Score=265.56 Aligned_cols=262 Identities=21% Similarity=0.316 Sum_probs=220.5
Q ss_pred cCCCCCeeeecCCCceeEEEEecCCCCEEEEeCCCCcEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEEcCCCeE
Q 017194 3 DAEAKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEV 82 (375)
Q Consensus 3 ~~~~~~~~l~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i 82 (375)
..+..++.|+||...|..++.+++ +++.++++.|+++++||+.+++..+.+.+|...|.+++|++|.+++++|+.|++|
T Consensus 51 ~~G~~~r~~~GHsH~v~dv~~s~d-g~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTi 129 (315)
T KOG0279|consen 51 KYGVPVRRLTGHSHFVSDVVLSSD-GNFALSASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTI 129 (315)
T ss_pred ccCceeeeeeccceEecceEEccC-CceEEeccccceEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCccee
Confidence 356778999999999999999999 8999999999999999999999999999999999999999999999999999999
Q ss_pred EEEECCCCCcccccccccCCCcceeEEEEcCC--CCeEEEEeCCCcEEEEeCcCceeeeeEecCcccceeEEEEeeCCCc
Q 017194 83 KSFDVHMPASWRPLESYNYNKEEINQIVCNPK--SSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPW 160 (375)
Q Consensus 83 ~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 160 (375)
++|+...+... .+.. ..+.+.|.|+.|+|+ ..+|++++.|++|++||+++.+....+. +|++.++.++++|||.
T Consensus 130 klwnt~g~ck~-t~~~-~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~-gh~~~v~t~~vSpDGs- 205 (315)
T KOG0279|consen 130 KLWNTLGVCKY-TIHE-DSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFI-GHSGYVNTVTVSPDGS- 205 (315)
T ss_pred eeeeecccEEE-EEec-CCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccc-cccccEEEEEECCCCC-
Confidence 99998854322 2221 122678999999997 7889999999999999999999999999 9999999999999999
Q ss_pred EEEEeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCc
Q 017194 161 EVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESE 240 (375)
Q Consensus 161 ~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~ 240 (375)
+.++|+.||.+.+||++.++.+..+. +...|.+++|+| +...|+.+ .+..|+|||+.+.
T Consensus 206 lcasGgkdg~~~LwdL~~~k~lysl~--------------a~~~v~sl~fsp------nrywL~~a-t~~sIkIwdl~~~ 264 (315)
T KOG0279|consen 206 LCASGGKDGEAMLWDLNEGKNLYSLE--------------AFDIVNSLCFSP------NRYWLCAA-TATSIKIWDLESK 264 (315)
T ss_pred EEecCCCCceEEEEEccCCceeEecc--------------CCCeEeeEEecC------CceeEeec-cCCceEEEeccch
Confidence 89999999999999999999988887 458999999999 45455544 4556999999986
Q ss_pred ceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEecCCCeEEEE
Q 017194 241 LNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVW 320 (375)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iw 320 (375)
............ . ..........+++|+ +||..|++|-.|+.|++|
T Consensus 265 ~~v~~l~~d~~g----------------------------~---s~~~~~~~clslaws---~dG~tLf~g~td~~irv~ 310 (315)
T KOG0279|consen 265 AVVEELKLDGIG----------------------------P---SSKAGDPICLSLAWS---ADGQTLFAGYTDNVIRVW 310 (315)
T ss_pred hhhhhccccccc----------------------------c---ccccCCcEEEEEEEc---CCCcEEEeeecCCcEEEE
Confidence 555433221100 0 122224456778999 999999999999999999
Q ss_pred eCCC
Q 017194 321 DCSR 324 (375)
Q Consensus 321 d~~~ 324 (375)
.+..
T Consensus 311 qv~~ 314 (315)
T KOG0279|consen 311 QVAK 314 (315)
T ss_pred Eeec
Confidence 8753
No 15
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=4.4e-43 Score=269.04 Aligned_cols=330 Identities=16% Similarity=0.216 Sum_probs=272.3
Q ss_pred CCeeeecCCCceeEEEEecCCCCEEEEeCCCCcEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEEcCCCeEEEEE
Q 017194 7 KPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFD 86 (375)
Q Consensus 7 ~~~~l~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i~iwd 86 (375)
.+.+|+.|+++|.+++.+|+ .+++|||+.|..-.||++.+++....+.+|+..|+++.|+.+|.+||+|.-+|.|+||.
T Consensus 56 S~~tF~~H~~svFavsl~P~-~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~ 134 (399)
T KOG0296|consen 56 SLVTFDKHTDSVFAVSLHPN-NNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFK 134 (399)
T ss_pred ceeehhhcCCceEEEEeCCC-CceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEE
Confidence 35689999999999999996 89999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCceeeeeEecCcccceeEEEEeeCCCcEEEEee
Q 017194 87 VHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGG 166 (375)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~ 166 (375)
..++.....+. ..-..|.-+.|+|.+..|++|+.||.+.+|.+.++...+.+. +|+.++++=.|.|+|+ .++++.
T Consensus 135 ~stg~~~~~~~---~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~-Gh~~~ct~G~f~pdGK-r~~tgy 209 (399)
T KOG0296|consen 135 VSTGGEQWKLD---QEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMS-GHNSPCTCGEFIPDGK-RILTGY 209 (399)
T ss_pred cccCceEEEee---cccCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEec-CCCCCcccccccCCCc-eEEEEe
Confidence 99876544443 224678889999999999999999999999999888888899 9999999999999999 799999
Q ss_pred cCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCcceeecc
Q 017194 167 LDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRS 246 (375)
Q Consensus 167 ~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~ 246 (375)
.||+|++||+.+++++..+... .....+++.++. .+..++.|+.++.+++-+..+++.....
T Consensus 210 ~dgti~~Wn~ktg~p~~~~~~~------------e~~~~~~~~~~~------~~~~~~~g~~e~~~~~~~~~sgKVv~~~ 271 (399)
T KOG0296|consen 210 DDGTIIVWNPKTGQPLHKITQA------------EGLELPCISLNL------AGSTLTKGNSEGVACGVNNGSGKVVNCN 271 (399)
T ss_pred cCceEEEEecCCCceeEEeccc------------ccCcCCcccccc------ccceeEeccCCccEEEEccccceEEEec
Confidence 9999999999999999888733 124556777776 6888999999999999888887766644
Q ss_pred cc-------cCCCCCCceeecccccce---ee---eeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEecC
Q 017194 247 KS-------TTKPLKGSQSTSKVNIRD---AE---MEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGN 313 (375)
Q Consensus 247 ~~-------~~~~~~~~~~~s~~g~~~---~~---~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~ 313 (375)
.. .......++.+.|....+ +. .|....++....+ ++..-.|..+|..+.|- + ..+|++++.
T Consensus 272 n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~-~R~~c~he~~V~~l~w~---~-t~~l~t~c~ 346 (399)
T KOG0296|consen 272 NGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAAST-LRHICEHEDGVTKLKWL---N-TDYLLTACA 346 (399)
T ss_pred CCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccch-hheeccCCCceEEEEEc---C-cchheeecc
Confidence 42 122233344444433322 21 1222222222222 23445688899999998 6 679999999
Q ss_pred CCeEEEEeCCCceeeeecchhhhhhhhcccccceeeeeecCCCCCcEEEeeCCCeEEEEecC
Q 017194 314 DKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSIS 375 (375)
Q Consensus 314 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~iw~~~ 375 (375)
||.|+.||.+++ .++..+.+|...|.+++.+| +.++++|+|.|++.+|++++
T Consensus 347 ~g~v~~wDaRtG---------~l~~~y~GH~~~Il~f~ls~-~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 347 NGKVRQWDARTG---------QLKFTYTGHQMGILDFALSP-QKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred CceEEeeecccc---------ceEEEEecCchheeEEEEcC-CCcEEEEecCCCeEEEEecC
Confidence 999999999999 77789999999999999999 99999999999999999874
No 16
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=1.7e-43 Score=264.56 Aligned_cols=294 Identities=20% Similarity=0.284 Sum_probs=251.8
Q ss_pred CCCeeeecCCCceeEEEEecCCCCEEEEeCCCCcEEEEecc-cCceeeEeeecCccEEEEEEeCCCCeEEEEcCCCeEEE
Q 017194 6 AKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLR-SKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKS 84 (375)
Q Consensus 6 ~~~~~l~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~-~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i~i 84 (375)
.++..+.+|++.|+.+.|+|+ |.+|||||.|..|.+|++. ..+....+++|.+.|..+.|.++++.+++++.|.+++.
T Consensus 38 ap~m~l~gh~geI~~~~F~P~-gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~ 116 (338)
T KOG0265|consen 38 APIMLLPGHKGEIYTIKFHPD-GSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRG 116 (338)
T ss_pred chhhhcCCCcceEEEEEECCC-CCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEE
Confidence 345567899999999999998 8999999999999999954 45567888899999999999999999999999999999
Q ss_pred EECCCCCcccccccccCCCcceeEEEEcCCC-CeEEEEeCCCcEEEEeCcCceeeeeEecCcccceeEEEEeeCCCcEEE
Q 017194 85 FDVHMPASWRPLESYNYNKEEINQIVCNPKS-SFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVI 163 (375)
Q Consensus 85 wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~ 163 (375)
||.++++ .+..+++|..-|+.+.-+.-| .++.+++.|+++++||+++...++++. ...+++++.|...+. .+.
T Consensus 117 wD~~tG~---~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~--~kyqltAv~f~d~s~-qv~ 190 (338)
T KOG0265|consen 117 WDAETGK---RIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFE--NKYQLTAVGFKDTSD-QVI 190 (338)
T ss_pred Eecccce---eeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccc--cceeEEEEEeccccc-cee
Confidence 9999875 445566678888888844444 457788999999999999999988886 567899999999998 699
Q ss_pred EeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCccee
Q 017194 164 SGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNI 243 (375)
Q Consensus 164 ~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~ 243 (375)
+|+-|+.|++||++.+..+..+. + |...|+.+..+| +|.++.+-+.|.++++||++-..
T Consensus 191 sggIdn~ikvWd~r~~d~~~~ls-G------------h~DtIt~lsls~------~gs~llsnsMd~tvrvwd~rp~~-- 249 (338)
T KOG0265|consen 191 SGGIDNDIKVWDLRKNDGLYTLS-G------------HADTITGLSLSR------YGSFLLSNSMDNTVRVWDVRPFA-- 249 (338)
T ss_pred eccccCceeeeccccCcceEEee-c------------ccCceeeEEecc------CCCccccccccceEEEEEecccC--
Confidence 99999999999999999998887 4 578999999999 79999999999999999998521
Q ss_pred ecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCC----ccEEEEEEeecCCCCcEEEEecCCCeEEE
Q 017194 244 SRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHT----AAASCVAFSMFGERGKYLISGGNDKLVKV 319 (375)
Q Consensus 244 ~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~v~~~~~s~~~~~~~~l~s~~~dg~i~i 319 (375)
...+++..+.+|. .....++|+ |++..+.+|+.|..+++
T Consensus 250 ----------------------------------p~~R~v~if~g~~hnfeknlL~csws---p~~~~i~ags~dr~vyv 292 (338)
T KOG0265|consen 250 ----------------------------------PSQRCVKIFQGHIHNFEKNLLKCSWS---PNGTKITAGSADRFVYV 292 (338)
T ss_pred ----------------------------------CCCceEEEeecchhhhhhhcceeecc---CCCCccccccccceEEE
Confidence 1113344555542 235567888 99999999999999999
Q ss_pred EeCCCceeeeecchhhhhhhhcccccceeeeeecCCCCCcEEEeeCCCeEEEEec
Q 017194 320 WDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSI 374 (375)
Q Consensus 320 wd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~iw~~ 374 (375)
||.... .++..+.+|.+.|+.++|+| ...+|.+++.|.+|++=++
T Consensus 293 wd~~~r---------~~lyklpGh~gsvn~~~Fhp-~e~iils~~sdk~i~lgei 337 (338)
T KOG0265|consen 293 WDTTSR---------RILYKLPGHYGSVNEVDFHP-TEPIILSCSSDKTIYLGEI 337 (338)
T ss_pred eecccc---------cEEEEcCCcceeEEEeeecC-CCcEEEEeccCceeEeecc
Confidence 999997 77789999999999999999 7789999999999987443
No 17
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=5.7e-44 Score=278.29 Aligned_cols=295 Identities=13% Similarity=0.154 Sum_probs=247.8
Q ss_pred CCCCCeeeecCCCceeEEEEecCCCCEEEEeCCCCcEEEEecccCc---eeeEeeecCccEEEEEEeCCCCeEEEEcCCC
Q 017194 4 AEAKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKD---VQLVTDVGNGPVTSLCFKSGNEDIIYVSSGK 80 (375)
Q Consensus 4 ~~~~~~~l~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~---~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~ 80 (375)
+-+..+.|+.|++.|+-+.|+++ |++|||++.|.+..+|++.... ..+++.+|..+|..+.|+||.++|++++.+.
T Consensus 213 p~qt~qil~~htdEVWfl~FS~n-GkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e 291 (519)
T KOG0293|consen 213 PSQTWQILQDHTDEVWFLQFSHN-GKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDE 291 (519)
T ss_pred CchhhhhHhhCCCcEEEEEEcCC-CeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchH
Confidence 34556778999999999999999 9999999999999999976543 4788899999999999999999999999999
Q ss_pred eEEEEECCCCCcccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCceeeeeEecCcccceeEEEEeeCCCc
Q 017194 81 EVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPW 160 (375)
Q Consensus 81 ~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 160 (375)
.+.+||..++........- +...+.+++|.||+..+++|+.|+++..||++ |..+..++......|.+++..+||+
T Consensus 292 ~~~lwDv~tgd~~~~y~~~--~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlD-gn~~~~W~gvr~~~v~dlait~Dgk- 367 (519)
T KOG0293|consen 292 VLSLWDVDTGDLRHLYPSG--LGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLD-GNILGNWEGVRDPKVHDLAITYDGK- 367 (519)
T ss_pred heeeccCCcchhhhhcccC--cCCCcceeEEccCCceeEecCCCCcEEEecCC-cchhhcccccccceeEEEEEcCCCc-
Confidence 9999999998765555442 45789999999999999999999999999985 5555666512235689999999999
Q ss_pred EEEEeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCc
Q 017194 161 EVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESE 240 (375)
Q Consensus 161 ~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~ 240 (375)
.+++.+.|..|++|+..+......+.. ..+++++.++. +++++++.-.+..+++||+...
T Consensus 368 ~vl~v~~d~~i~l~~~e~~~dr~lise--------------~~~its~~iS~------d~k~~LvnL~~qei~LWDl~e~ 427 (519)
T KOG0293|consen 368 YVLLVTVDKKIRLYNREARVDRGLISE--------------EQPITSFSISK------DGKLALVNLQDQEIHLWDLEEN 427 (519)
T ss_pred EEEEEecccceeeechhhhhhhccccc--------------cCceeEEEEcC------CCcEEEEEcccCeeEEeecchh
Confidence 577777999999999887665544442 37899999998 8999999999999999999964
Q ss_pred ceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEE--EEEEeecCCCCcEEEEecCCCeEE
Q 017194 241 LNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAAS--CVAFSMFGERGKYLISGGNDKLVK 318 (375)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~--~~~~s~~~~~~~~l~s~~~dg~i~ 318 (375)
..+..+.||...-. .-+|- +.+..++++|++|+.|+
T Consensus 428 ----------------------------------------~lv~kY~Ghkq~~fiIrSCFg--g~~~~fiaSGSED~kvy 465 (519)
T KOG0293|consen 428 ----------------------------------------KLVRKYFGHKQGHFIIRSCFG--GGNDKFIASGSEDSKVY 465 (519)
T ss_pred ----------------------------------------hHHHHhhcccccceEEEeccC--CCCcceEEecCCCceEE
Confidence 33446667755432 22333 14568999999999999
Q ss_pred EEeCCCceeeeecchhhhhhhhcccccceeeeeecCCCCCcEEEeeCCCeEEEEec
Q 017194 319 VWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSI 374 (375)
Q Consensus 319 iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~iw~~ 374 (375)
||+..++ +++..+.||...|++++|+|.+..++|+++.||+||||..
T Consensus 466 IWhr~sg---------kll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~ 512 (519)
T KOG0293|consen 466 IWHRISG---------KLLAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRIWGP 512 (519)
T ss_pred EEEccCC---------ceeEeecCCcceeeEEecCCCCHHHhhccCCCCeEEEecC
Confidence 9999999 8888999999999999999999999999999999999975
No 18
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=3.1e-43 Score=292.82 Aligned_cols=340 Identities=16% Similarity=0.190 Sum_probs=278.1
Q ss_pred CCCCCeeeec-CCCceeEEEEecCCCCEEEEeCCCCcEEEEecccCceeeEeeecCccEEEEEEeCCCC--eEEEEcCCC
Q 017194 4 AEAKPRRLRG-HKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNE--DIIYVSSGK 80 (375)
Q Consensus 4 ~~~~~~~l~~-h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~--~l~~~~~d~ 80 (375)
+++.++.++. |++||.-++|+|. +..|++|+.|+.+++||+..+.+...+++|.+.|.++.|+|+-+ .|++|..|+
T Consensus 93 tgk~irswKa~He~Pvi~ma~~~~-g~LlAtggaD~~v~VWdi~~~~~th~fkG~gGvVssl~F~~~~~~~lL~sg~~D~ 171 (775)
T KOG0319|consen 93 TGKLIRSWKAIHEAPVITMAFDPT-GTLLATGGADGRVKVWDIKNGYCTHSFKGHGGVVSSLLFHPHWNRWLLASGATDG 171 (775)
T ss_pred cchHhHhHhhccCCCeEEEEEcCC-CceEEeccccceEEEEEeeCCEEEEEecCCCceEEEEEeCCccchhheeecCCCc
Confidence 5677888888 9999999999999 79999999999999999999999999999999999999999765 488999999
Q ss_pred eEEEEECCCCCcccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCceeee---------------------
Q 017194 81 EVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYK--------------------- 139 (375)
Q Consensus 81 ~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~--------------------- 139 (375)
.+++||+.+... .+.....|.+.|++++|.+|+..+++++.|..+.+||+.+.+..+
T Consensus 172 ~v~vwnl~~~~t--cl~~~~~H~S~vtsL~~~~d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~ye~~E~vv~l~~~~~~~ 249 (775)
T KOG0319|consen 172 TVRVWNLNDKRT--CLHTMILHKSAVTSLAFSEDSLELLSVGRDKVIIVWDLVQYKKLKTLPLYESLESVVRLREELGGK 249 (775)
T ss_pred eEEEEEcccCch--HHHHHHhhhhheeeeeeccCCceEEEeccCcEEEEeehhhhhhhheechhhheeeEEEechhcCCc
Confidence 999999986543 566777889999999999999989999999999999875321111
Q ss_pred --------------------------------------------------------------------------------
Q 017194 140 -------------------------------------------------------------------------------- 139 (375)
Q Consensus 140 -------------------------------------------------------------------------------- 139 (375)
T Consensus 250 ~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm 329 (775)
T KOG0319|consen 250 GEYIITAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDEILDM 329 (775)
T ss_pred ceEEEEecCCceEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEehhhcCCchhheee
Confidence
Q ss_pred ------------------------------eEecCcccceeEEEEeeCCCcEEEEeecCCeEEEeeCCCCCcceEEecCC
Q 017194 140 ------------------------------SLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGL 189 (375)
Q Consensus 140 ------------------------------~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~ 189 (375)
.+. +|...|.++....+|. +|++|+.|.++++|.++.+....... .
T Consensus 330 ~~lG~e~~~laVATNs~~lr~y~~~~~~c~ii~-GH~e~vlSL~~~~~g~-llat~sKD~svilWr~~~~~~~~~~~-a- 405 (775)
T KOG0319|consen 330 KFLGPEESHLAVATNSPELRLYTLPTSYCQIIP-GHTEAVLSLDVWSSGD-LLATGSKDKSVILWRLNNNCSKSLCV-A- 405 (775)
T ss_pred eecCCccceEEEEeCCCceEEEecCCCceEEEe-CchhheeeeeecccCc-EEEEecCCceEEEEEecCCcchhhhh-h-
Confidence 223 7888888888555665 89999999999999885443221111 0
Q ss_pred CCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCcceeec--------ccccCCCCCCceeecc
Q 017194 190 PENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISR--------SKSTTKPLKGSQSTSK 261 (375)
Q Consensus 190 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~--------~~~~~~~~~~~~~~s~ 261 (375)
....|...|.+++++.. ...+|++++.|+++++|++...+.... ....+...+.+++++|
T Consensus 406 -------~~~gH~~svgava~~~~-----~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ 473 (775)
T KOG0319|consen 406 -------QANGHTNSVGAVAGSKL-----GASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAP 473 (775)
T ss_pred -------hhcccccccceeeeccc-----CccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecC
Confidence 00116788999999763 567899999999999999987222111 1233556788999999
Q ss_pred cccceeeee---eeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEecCCCeEEEEeCCCceeeeecchhhhhh
Q 017194 262 VNIRDAEME---ILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLI 338 (375)
Q Consensus 262 ~g~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 338 (375)
+.+.+++.+ ..-.+.-...+....+.+|...|.++.|+ |..+.++|+|.|++|+||.+.+. .+++
T Consensus 474 ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs---~~dq~laT~SgD~TvKIW~is~f---------SClk 541 (775)
T KOG0319|consen 474 NDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFS---KNDQLLATCSGDKTVKIWSISTF---------SCLK 541 (775)
T ss_pred CCceEEecccccceeeecccCceEEEEeeCCccceEEEEec---cccceeEeccCCceEEEEEeccc---------eeee
Confidence 999999732 22223334678888999999999999999 88999999999999999999999 8899
Q ss_pred hhcccccceeeeeecCCCCCcEEEeeCCCeEEEEecC
Q 017194 339 KNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSIS 375 (375)
Q Consensus 339 ~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~iw~~~ 375 (375)
++.||...|..+.|.. +++.|+|++.||-+++|+++
T Consensus 542 T~eGH~~aVlra~F~~-~~~qliS~~adGliKlWnik 577 (775)
T KOG0319|consen 542 TFEGHTSAVLRASFIR-NGKQLISAGADGLIKLWNIK 577 (775)
T ss_pred eecCccceeEeeeeee-CCcEEEeccCCCcEEEEecc
Confidence 9999999999999998 89999999999999999975
No 19
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=3.5e-43 Score=278.15 Aligned_cols=290 Identities=19% Similarity=0.232 Sum_probs=252.5
Q ss_pred eeeecCCCceeEEEEecCCCCEEEEeCCCCcEEEEecccC--c--eeeEee----------ecCccEEEEEEeCCCCeEE
Q 017194 9 RRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSK--D--VQLVTD----------VGNGPVTSLCFKSGNEDII 74 (375)
Q Consensus 9 ~~l~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~--~--~~~~~~----------~~~~~v~~l~~~~~~~~l~ 74 (375)
+.+. |+.+|.+++|+|-....+++|+.|-+.++|++... . ....++ ..+..|++++|+.+|..||
T Consensus 173 kvl~-~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~La 251 (524)
T KOG0273|consen 173 KVLR-HESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGTLLA 251 (524)
T ss_pred eecc-CCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCCeEE
Confidence 3444 99999999999985559999999999999998741 1 111111 1246899999999999999
Q ss_pred EEcCCCeEEEEECCCCCcccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCceeeeeEecCcccceeEEEE
Q 017194 75 YVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQF 154 (375)
Q Consensus 75 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~ 154 (375)
+|+.||.+++|+.. ...+..+..|.++|.++.|+..|.+|++++.|+++.+||..+++..+.+. -|..+-..+.|
T Consensus 252 tG~~~G~~riw~~~----G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~-~~s~~~lDVdW 326 (524)
T KOG0273|consen 252 TGSEDGEARIWNKD----GNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFE-FHSAPALDVDW 326 (524)
T ss_pred EeecCcEEEEEecC----chhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeee-eccCCccceEE
Confidence 99999999999987 35666777889999999999999999999999999999999999999998 88888788999
Q ss_pred eeCCCcEEEEeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEE
Q 017194 155 IPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDV 234 (375)
Q Consensus 155 ~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i 234 (375)
-.+. .|++++.|+.|+++.+....++.++. + |...|.++.|.| .+.+|++++.|++++|
T Consensus 327 ~~~~--~F~ts~td~~i~V~kv~~~~P~~t~~-G------------H~g~V~alk~n~------tg~LLaS~SdD~Tlki 385 (524)
T KOG0273|consen 327 QSND--EFATSSTDGCIHVCKVGEDRPVKTFI-G------------HHGEVNALKWNP------TGSLLASCSDDGTLKI 385 (524)
T ss_pred ecCc--eEeecCCCceEEEEEecCCCcceeee-c------------ccCceEEEEECC------CCceEEEecCCCeeEe
Confidence 8877 49999999999999999999998887 3 578999999999 7999999999999999
Q ss_pred EeCCCcceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCC------CCcEE
Q 017194 235 INIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGE------RGKYL 308 (375)
Q Consensus 235 ~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~------~~~~l 308 (375)
|..... .....+.+|...|..+.|+|.+| .+..+
T Consensus 386 Ws~~~~----------------------------------------~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l 425 (524)
T KOG0273|consen 386 WSMGQS----------------------------------------NSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLML 425 (524)
T ss_pred eecCCC----------------------------------------cchhhhhhhccceeeEeecCCCCccCCCcCCceE
Confidence 998753 45568889999999999995322 34589
Q ss_pred EEecCCCeEEEEeCCCceeeeecchhhhhhhhcccccceeeeeecCCCCCcEEEeeCCCeEEEEecC
Q 017194 309 ISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSIS 375 (375)
Q Consensus 309 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~iw~~~ 375 (375)
++++.|++|++||+..+ .++..+..|..+|.+++|+| +|+|+|+|+.||.|.+|+.+
T Consensus 426 ~sas~dstV~lwdv~~g---------v~i~~f~kH~~pVysvafS~-~g~ylAsGs~dg~V~iws~~ 482 (524)
T KOG0273|consen 426 ASASFDSTVKLWDVESG---------VPIHTLMKHQEPVYSVAFSP-NGRYLASGSLDGCVHIWSTK 482 (524)
T ss_pred EEeecCCeEEEEEccCC---------ceeEeeccCCCceEEEEecC-CCcEEEecCCCCeeEecccc
Confidence 99999999999999999 66778899999999999999 99999999999999999863
No 20
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=9.7e-42 Score=281.07 Aligned_cols=288 Identities=21% Similarity=0.360 Sum_probs=252.8
Q ss_pred CeeeecCCCceeEEEEecCCCCEEEEeCCCCcEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEEcCCCeEEEEEC
Q 017194 8 PRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDV 87 (375)
Q Consensus 8 ~~~l~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i~iwd~ 87 (375)
++++++|.++|++++|+|+ +++|++++.||.|++|++.+++....+..|...+..+.|+|+++.+++++.++.|++|++
T Consensus 2 ~~~~~~h~~~i~~~~~~~~-~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~ 80 (289)
T cd00200 2 RRTLKGHTGGVTCVAFSPD-GKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDL 80 (289)
T ss_pred chHhcccCCCEEEEEEcCC-CCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEc
Confidence 4678899999999999999 899999999999999999998888888899999999999999999999999999999999
Q ss_pred CCCCcccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCceeeeeEecCcccceeEEEEeeCCCcEEEEeec
Q 017194 88 HMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGL 167 (375)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~ 167 (375)
.+++ .+..+..|...+.++.|+++++++++++.++.+.+||+++++....+. .|...+.+++|+|++. ++++++.
T Consensus 81 ~~~~---~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~-~l~~~~~ 155 (289)
T cd00200 81 ETGE---CVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLR-GHTDWVNSVAFSPDGT-FVASSSQ 155 (289)
T ss_pred Cccc---ceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEec-cCCCcEEEEEEcCcCC-EEEEEcC
Confidence 8653 344455667899999999998888888889999999999888888888 8999999999999976 6777777
Q ss_pred CCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCcceeeccc
Q 017194 168 DSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSK 247 (375)
Q Consensus 168 d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 247 (375)
++.|++||+++++....+.. +...+.++.++| +++.+++++.++.|++||+++.
T Consensus 156 ~~~i~i~d~~~~~~~~~~~~-------------~~~~i~~~~~~~------~~~~l~~~~~~~~i~i~d~~~~------- 209 (289)
T cd00200 156 DGTIKLWDLRTGKCVATLTG-------------HTGEVNSVAFSP------DGEKLLSSSSDGTIKLWDLSTG------- 209 (289)
T ss_pred CCcEEEEEccccccceeEec-------------CccccceEEECC------CcCEEEEecCCCcEEEEECCCC-------
Confidence 99999999998888877763 356899999999 7889999999999999999863
Q ss_pred ccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEecCCCeEEEEeCCCcee
Q 017194 248 STTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQG 327 (375)
Q Consensus 248 ~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd~~~~~~ 327 (375)
+....+..|...+.++.|+ |++.++++++.||.|++||+.++
T Consensus 210 ---------------------------------~~~~~~~~~~~~i~~~~~~---~~~~~~~~~~~~~~i~i~~~~~~-- 251 (289)
T cd00200 210 ---------------------------------KCLGTLRGHENGVNSVAFS---PDGYLLASGSEDGTIRVWDLRTG-- 251 (289)
T ss_pred ---------------------------------ceecchhhcCCceEEEEEc---CCCcEEEEEcCCCcEEEEEcCCc--
Confidence 2334555778899999999 88889999998999999999987
Q ss_pred eeecchhhhhhhhcccccceeeeeecCCCCCcEEEeeCCCeEEEEe
Q 017194 328 VQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYS 373 (375)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~iw~ 373 (375)
.....+..|...+.+++|+| ++++|++++.||.|++|+
T Consensus 252 -------~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 252 -------ECVQTLSGHTNSVTSLAWSP-DGKRLASGSADGTIRIWD 289 (289)
T ss_pred -------eeEEEccccCCcEEEEEECC-CCCEEEEecCCCeEEecC
Confidence 44445568888999999999 889999999999999996
No 21
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=1.8e-42 Score=274.05 Aligned_cols=284 Identities=18% Similarity=0.233 Sum_probs=247.4
Q ss_pred CceeEEEEecCCCCEEEEeCCCCcEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEEcCCCeEEEEECCCCCcccc
Q 017194 16 ATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRP 95 (375)
Q Consensus 16 ~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~ 95 (375)
..|++++|+.+ |..||+|+.||.++||+.. |..+.++..|.++|.++.|+..|.+|++++.|+++.+||..++...
T Consensus 236 kdVT~L~Wn~~-G~~LatG~~~G~~riw~~~-G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~-- 311 (524)
T KOG0273|consen 236 KDVTSLDWNND-GTLLATGSEDGEARIWNKD-GNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVK-- 311 (524)
T ss_pred CCcceEEecCC-CCeEEEeecCcEEEEEecC-chhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEE--
Confidence 56999999999 9999999999999999965 7778899999999999999999999999999999999999876443
Q ss_pred cccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCceeeeeEecCcccceeEEEEeeCCCcEEEEeecCCeEEEee
Q 017194 96 LESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWD 175 (375)
Q Consensus 96 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd 175 (375)
+.+..|..+-..+.|-.+ ..+++++.|+.|+++.+....++.++. +|.++|.++.|.|.+. +|++++.|+++++|.
T Consensus 312 -q~f~~~s~~~lDVdW~~~-~~F~ts~td~~i~V~kv~~~~P~~t~~-GH~g~V~alk~n~tg~-LLaS~SdD~TlkiWs 387 (524)
T KOG0273|consen 312 -QQFEFHSAPALDVDWQSN-DEFATSSTDGCIHVCKVGEDRPVKTFI-GHHGEVNALKWNPTGS-LLASCSDDGTLKIWS 387 (524)
T ss_pred -EeeeeccCCccceEEecC-ceEeecCCCceEEEEEecCCCcceeee-cccCceEEEEECCCCc-eEEEecCCCeeEeee
Confidence 334445666677888654 478889999999999999999999999 9999999999999998 899999999999999
Q ss_pred CCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCcc---ccCCCCEEEEEecCCcEEEEeCCCcceeecccccCCC
Q 017194 176 FSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADM---LDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKP 252 (375)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~---~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~ 252 (375)
+........+.. |...|..+.|+|... ....+..+++++.|++|++||+..+
T Consensus 388 ~~~~~~~~~l~~-------------Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~g------------ 442 (524)
T KOG0273|consen 388 MGQSNSVHDLQA-------------HSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESG------------ 442 (524)
T ss_pred cCCCcchhhhhh-------------hccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCC------------
Confidence 988877777764 467899999998632 2335678999999999999999975
Q ss_pred CCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEecCCCeEEEEeCCCceeeeecc
Q 017194 253 LKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSI 332 (375)
Q Consensus 253 ~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 332 (375)
.++..+..|..+|++++|+ |+|+|+|+|+.||.|.+|+.+++
T Consensus 443 ----------------------------v~i~~f~kH~~pVysvafS---~~g~ylAsGs~dg~V~iws~~~~------- 484 (524)
T KOG0273|consen 443 ----------------------------VPIHTLMKHQEPVYSVAFS---PNGRYLASGSLDGCVHIWSTKTG------- 484 (524)
T ss_pred ----------------------------ceeEeeccCCCceEEEEec---CCCcEEEecCCCCeeEeccccch-------
Confidence 5667899999999999999 99999999999999999999998
Q ss_pred hhhhhhhhcccccceeeeeecCCCCCcEEEeeCCCeEEEEec
Q 017194 333 NNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSI 374 (375)
Q Consensus 333 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~iw~~ 374 (375)
++++.+.+ .+.|..++|+. +|++|..+-.|+.+++-|+
T Consensus 485 --~l~~s~~~-~~~Ifel~Wn~-~G~kl~~~~sd~~vcvldl 522 (524)
T KOG0273|consen 485 --KLVKSYQG-TGGIFELCWNA-AGDKLGACASDGSVCVLDL 522 (524)
T ss_pred --heeEeecC-CCeEEEEEEcC-CCCEEEEEecCCCceEEEe
Confidence 55544443 45699999998 8899999999999999886
No 22
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=6.7e-42 Score=294.05 Aligned_cols=289 Identities=21% Similarity=0.318 Sum_probs=251.2
Q ss_pred eeecC-CCceeEEEEecCCCCEEEEeCCCCcEEEEecccCc--eeeEeeecCccEEEEEEeCCCCeEEEEcCCCeEEEEE
Q 017194 10 RLRGH-KATATCCIASRDRPGFVASSGEDGCICWFDLRSKD--VQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFD 86 (375)
Q Consensus 10 ~l~~h-~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~--~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i~iwd 86 (375)
.+.+| ...|.|+.|+|+ |+.+++++.++.+++|+..+.+ ....+.+|...|..++|+|+++++++++.|++|++||
T Consensus 153 ~~~~~~~~sv~~~~fs~~-g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd 231 (456)
T KOG0266|consen 153 TLAGHECPSVTCVDFSPD-GRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWD 231 (456)
T ss_pred eecccccCceEEEEEcCC-CCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEee
Confidence 34444 788999999999 8899999999999999998777 7777889999999999999999999999999999999
Q ss_pred CCCCCcccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCceeeeeEecCcccceeEEEEeeCCCcEEEEee
Q 017194 87 VHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGG 166 (375)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~ 166 (375)
++. ....++.+.+|...|++++|+|+++++++|+.|++|++||+++++++..+. +|...|++++|++++. .|++++
T Consensus 232 ~~~--~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~-~hs~~is~~~f~~d~~-~l~s~s 307 (456)
T KOG0266|consen 232 LKD--DGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLK-GHSDGISGLAFSPDGN-LLVSAS 307 (456)
T ss_pred ccC--CCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeee-ccCCceEEEEECCCCC-EEEEcC
Confidence 943 235667778999999999999999999999999999999999999999999 9999999999999999 799999
Q ss_pred cCCeEEEeeCCCCC--cceEEecCCCCCCCCCCcccCCC-ceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCccee
Q 017194 167 LDSKLVMWDFSKGR--PNKIVNFGLPENNGNAGQCYNPA-FVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNI 243 (375)
Q Consensus 167 ~d~~i~~wd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~ 243 (375)
.|+.|++||+.++. +...+... ... .++++.|+| ++.++++++.|+.+++||+...
T Consensus 308 ~d~~i~vwd~~~~~~~~~~~~~~~------------~~~~~~~~~~fsp------~~~~ll~~~~d~~~~~w~l~~~--- 366 (456)
T KOG0266|consen 308 YDGTIRVWDLETGSKLCLKLLSGA------------ENSAPVTSVQFSP------NGKYLLSASLDRTLKLWDLRSG--- 366 (456)
T ss_pred CCccEEEEECCCCceeeeecccCC------------CCCCceeEEEECC------CCcEEEEecCCCeEEEEEccCC---
Confidence 99999999999988 44554422 122 689999999 8999999999999999999975
Q ss_pred ecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccE---EEEEEeecCCCCcEEEEecCCCeEEEE
Q 017194 244 SRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAA---SCVAFSMFGERGKYLISGGNDKLVKVW 320 (375)
Q Consensus 244 ~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v---~~~~~s~~~~~~~~l~s~~~dg~i~iw 320 (375)
.....+.+|...+ .+...+ +.++++++|+.|+.|++|
T Consensus 367 -------------------------------------~~~~~~~~~~~~~~~~~~~~~~---~~~~~i~sg~~d~~v~~~ 406 (456)
T KOG0266|consen 367 -------------------------------------KSVGTYTGHSNLVRCIFSPTLS---TGGKLIYSGSEDGSVYVW 406 (456)
T ss_pred -------------------------------------cceeeecccCCcceeEeccccc---CCCCeEEEEeCCceEEEE
Confidence 3334555555533 333334 799999999999999999
Q ss_pred eCCCceeeeecchhhhhhhhccc-ccceeeeeecCCCCCcEEEee--CCCeEEEEec
Q 017194 321 DCSRFQGVQTSINNDLLIKNINL-NKKVNWLCTTPTESENLVVCD--TSKVVKVYSI 374 (375)
Q Consensus 321 d~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~l~s~~--~dg~v~iw~~ 374 (375)
|+.+. ..+..+.+| ...+..+.++| ..+++++++ .|+.+++|..
T Consensus 407 ~~~s~---------~~~~~l~~h~~~~~~~~~~~~-~~~~~~s~s~~~d~~~~~w~~ 453 (456)
T KOG0266|consen 407 DSSSG---------GILQRLEGHSKAAVSDLSSHP-TENLIASSSFEGDGLIRLWKY 453 (456)
T ss_pred eCCcc---------chhhhhcCCCCCceeccccCC-CcCeeeecCcCCCceEEEecC
Confidence 99997 788899999 89999999999 788999988 7999999975
No 23
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=7.7e-41 Score=268.43 Aligned_cols=349 Identities=17% Similarity=0.180 Sum_probs=260.1
Q ss_pred CCCeeeecCCCceeEEEEecCCCCEEEEeCCCCcEEEEecccCce--eeEeeecCccEEEEEEeCCCCeEEEEcCC----
Q 017194 6 AKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDV--QLVTDVGNGPVTSLCFKSGNEDIIYVSSG---- 79 (375)
Q Consensus 6 ~~~~~l~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~--~~~~~~~~~~v~~l~~~~~~~~l~~~~~d---- 79 (375)
.....+.+|..+++-..|+|. |.++|+|...|+|||||....+. ..+++.-.++|..|+|++++++|++.+..
T Consensus 50 ~~~~iYtEH~~~vtVAkySPs-G~yiASGD~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~ds~RI~avGEGrerf 128 (603)
T KOG0318|consen 50 ASVDIYTEHAHQVTVAKYSPS-GFYIASGDVSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFDSKRIAAVGEGRERF 128 (603)
T ss_pred cceeeeccccceeEEEEeCCC-ceEEeecCCcCcEEEEeccCcceeeeeeeeecccccccceeCCCCcEEEEEecCccce
Confidence 345567889999999999999 89999999999999999865432 33455567888889998888888887754
Q ss_pred CeEEEEECCCCC--------------------------------------cccccccccCCCcceeEEEEcCCCCeEEEE
Q 017194 80 KEVKSFDVHMPA--------------------------------------SWRPLESYNYNKEEINQIVCNPKSSFLACA 121 (375)
Q Consensus 80 ~~i~iwd~~~~~--------------------------------------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 121 (375)
|.+.+||..+.. ..+.-..+..|..-|.++.|+|||.++++.
T Consensus 129 g~~F~~DSG~SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~ 208 (603)
T KOG0318|consen 129 GHVFLWDSGNSVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATA 208 (603)
T ss_pred eEEEEecCCCccceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEe
Confidence 477888875410 111112233578889999999999999999
Q ss_pred eCCCcEEEEeCcCceeeeeEe--cCcccceeEEEEeeCCCcEEEEeecCCeEEEeeCCCCCcceEEecCCCC--------
Q 017194 122 DDGGDVKIIDIRQHCLYKSLR--AGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPE-------- 191 (375)
Q Consensus 122 ~~dg~i~iwd~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~-------- 191 (375)
+.||.+.+||=.+++.+..+. .+|.+.|.+++|+||+. .+++++.|.++++||+.+.++++++..+..-
T Consensus 209 gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~-~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~l 287 (603)
T KOG0318|consen 209 GSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDST-QFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCL 287 (603)
T ss_pred cCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCc-eEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEE
Confidence 999999999999999888875 27999999999999999 7999999999999999998887777655321
Q ss_pred ----------------------CCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCcceeecccc-
Q 017194 192 ----------------------NNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKS- 248 (375)
Q Consensus 192 ----------------------~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~- 248 (375)
........-|...|+++..+| ++++|++|+.||.|.-|+..++..-.....
T Consensus 288 Wqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~------d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~ 361 (603)
T KOG0318|consen 288 WQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSP------DGKTIYSGSYDGHINSWDSGSGTSDRLAGKG 361 (603)
T ss_pred EeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcC------CCCEEEeeccCceEEEEecCCcccccccccc
Confidence 000112223677899999999 799999999999999999986543211000
Q ss_pred -----------------------------------------cCCCCCCceeeccc-------------------------
Q 017194 249 -----------------------------------------TTKPLKGSQSTSKV------------------------- 262 (375)
Q Consensus 249 -----------------------------------------~~~~~~~~~~~s~~------------------------- 262 (375)
....++..++..++
T Consensus 362 h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~ 441 (603)
T KOG0318|consen 362 HTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIP 441 (603)
T ss_pred ccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeec
Confidence 00011122333333
Q ss_pred -------------ccceeeee------eeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEecCCCeEEEEeCC
Q 017194 263 -------------NIRDAEME------ILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCS 323 (375)
Q Consensus 263 -------------g~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd~~ 323 (375)
++.++..| .+... +........+..|.++|+.+++| ||+.|||+|...+.+.+||+.
T Consensus 442 ~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~-g~~l~ee~~~~~h~a~iT~vayS---pd~~yla~~Da~rkvv~yd~~ 517 (603)
T KOG0318|consen 442 IGYESSAVAVSPDGSEVAVGGQDGKVHVYSLS-GDELKEEAKLLEHRAAITDVAYS---PDGAYLAAGDASRKVVLYDVA 517 (603)
T ss_pred cccccceEEEcCCCCEEEEecccceEEEEEec-CCcccceeeeecccCCceEEEEC---CCCcEEEEeccCCcEEEEEcc
Confidence 33333211 00000 11112233455789999999999 999999999999999999999
Q ss_pred CceeeeecchhhhhhhhcccccceeeeeecCCCCCcEEEeeCCCeEEEEecC
Q 017194 324 RFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSIS 375 (375)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~iw~~~ 375 (375)
+.+ .......-|+..|.+++|+| +.+++|+|+-|-.|.||+++
T Consensus 518 s~~--------~~~~~w~FHtakI~~~aWsP-~n~~vATGSlDt~Viiysv~ 560 (603)
T KOG0318|consen 518 SRE--------VKTNRWAFHTAKINCVAWSP-NNKLVATGSLDTNVIIYSVK 560 (603)
T ss_pred cCc--------eecceeeeeeeeEEEEEeCC-CceEEEeccccceEEEEEcc
Confidence 974 22234445999999999999 88999999999999999974
No 24
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.9e-41 Score=283.04 Aligned_cols=333 Identities=17% Similarity=0.206 Sum_probs=275.0
Q ss_pred CeeeecCCCceeEEEEecCCCCEEEEeCCCCcEEEEecccCce--eeEeeecCccEEEEEEeCCCCeEEEEcCCCeEEEE
Q 017194 8 PRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDV--QLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSF 85 (375)
Q Consensus 8 ~~~l~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~--~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i~iw 85 (375)
.+++.||.+.|.++.|+-| .++|++|+.|.+++||.++..+. ...+.+|...|.++-|..+...+++.+.||.+.+|
T Consensus 138 ~r~~~g~fddi~si~Ws~D-Sr~l~~gsrD~s~rl~~v~~~k~~~~~~l~gHkd~VvacfF~~~~~~l~tvskdG~l~~W 216 (893)
T KOG0291|consen 138 HRTYLGHFDDITSIDWSDD-SRLLVTGSRDLSARLFGVDGNKNLFTYALNGHKDYVVACFFGANSLDLYTVSKDGALFVW 216 (893)
T ss_pred eeeecCCccceeEEEeccC-CceEEeccccceEEEEEeccccccceEeccCCCcceEEEEeccCcceEEEEecCceEEEE
Confidence 4577899999999999998 89999999999999999987665 66778999999999999999999999999999999
Q ss_pred ECCCC-----------------------Cc------cccccc--ccC---------------------------------
Q 017194 86 DVHMP-----------------------AS------WRPLES--YNY--------------------------------- 101 (375)
Q Consensus 86 d~~~~-----------------------~~------~~~~~~--~~~--------------------------------- 101 (375)
..... +. +...+. +..
T Consensus 217 ~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~ 296 (893)
T KOG0291|consen 217 TCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGTNLLVVGFSSGEFGLYELPD 296 (893)
T ss_pred EecCCCcccccccccccccccccccccchhhhcceEEEEEEeeeecccccceeeeeccCCceEEEEEecCCeeEEEecCC
Confidence 87610 00 000000 000
Q ss_pred ---------CCcceeEEEEcCCCCeEEEEeC-CCcEEEEeCcCceeeeeEecCcccceeEEEEeeCCCcEEEEeecCCeE
Q 017194 102 ---------NKEEINQIVCNPKSSFLACADD-GGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKL 171 (375)
Q Consensus 102 ---------~~~~v~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i 171 (375)
...+|..++|+..|.+||.|+. -|.+.||+..+..-+...+ +|...+++++++|||. ++++|++||+|
T Consensus 297 f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQ-gH~~~i~~l~YSpDgq-~iaTG~eDgKV 374 (893)
T KOG0291|consen 297 FNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQ-GHSDRITSLAYSPDGQ-LIATGAEDGKV 374 (893)
T ss_pred ceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccceeeecc-ccccceeeEEECCCCc-EEEeccCCCcE
Confidence 1234555666666677776653 3677777777766666667 8999999999999999 89999999999
Q ss_pred EEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCcceeecccccCC
Q 017194 172 VMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTK 251 (375)
Q Consensus 172 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~ 251 (375)
++||..++-++.++.- |...|+.+.|+. .++.+++++-||+|+.||+...+.-..+..+..
T Consensus 375 KvWn~~SgfC~vTFte-------------Hts~Vt~v~f~~------~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p 435 (893)
T KOG0291|consen 375 KVWNTQSGFCFVTFTE-------------HTSGVTAVQFTA------RGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEP 435 (893)
T ss_pred EEEeccCceEEEEecc-------------CCCceEEEEEEe------cCCEEEEeecCCeEEeeeecccceeeeecCCCc
Confidence 9999999999999974 578999999998 799999999999999999998887777777777
Q ss_pred CCCCceeecccccceeeee----eeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEecCCCeEEEEeCCCcee
Q 017194 252 PLKGSQSTSKVNIRDAEME----ILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQG 327 (375)
Q Consensus 252 ~~~~~~~~s~~g~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd~~~~~~ 327 (375)
....+++..|.|..+.... ..-.+..++.+++..+.||.++|.+++|+ |++..|++++.|.+|++||+-...
T Consensus 436 ~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~---~~~~~LaS~SWDkTVRiW~if~s~- 511 (893)
T KOG0291|consen 436 IQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFS---PDGSLLASGSWDKTVRIWDIFSSS- 511 (893)
T ss_pred eeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEc---cccCeEEeccccceEEEEEeeccC-
Confidence 7888889999998876522 22345567778889999999999999999 999999999999999999997762
Q ss_pred eeecchhhhhhhhcccccceeeeeecCCCCCcEEEeeCCCeEEEEecC
Q 017194 328 VQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSIS 375 (375)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~iw~~~ 375 (375)
-......+...+..++|.| +|+-|+++..||.|.+||.+
T Consensus 512 --------~~vEtl~i~sdvl~vsfrP-dG~elaVaTldgqItf~d~~ 550 (893)
T KOG0291|consen 512 --------GTVETLEIRSDVLAVSFRP-DGKELAVATLDGQITFFDIK 550 (893)
T ss_pred --------ceeeeEeeccceeEEEEcC-CCCeEEEEEecceEEEEEhh
Confidence 2234456778899999999 99999999999999999974
No 25
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=2.8e-43 Score=268.97 Aligned_cols=278 Identities=18% Similarity=0.268 Sum_probs=242.1
Q ss_pred CCCceeEEEEecCCCCEEEEeCCCCcEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEEcCCCeEEEEECCCCCcc
Q 017194 14 HKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASW 93 (375)
Q Consensus 14 h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i~iwd~~~~~~~ 93 (375)
....|+|+.+. .+.+++|..|++|+|||.++..+...+.+|++.|.|+.|. .+.+++|+.|.+|++||++++
T Consensus 196 ~skgVYClQYD---D~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd--~rviisGSSDsTvrvWDv~tg--- 267 (499)
T KOG0281|consen 196 NSKGVYCLQYD---DEKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQYD--ERVIVSGSSDSTVRVWDVNTG--- 267 (499)
T ss_pred cCCceEEEEec---chhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeecc--ceEEEecCCCceEEEEeccCC---
Confidence 35679999985 4689999999999999999999999999999999999996 468999999999999999986
Q ss_pred cccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCce---eeeeEecCcccceeEEEEeeCCCcEEEEeecCCe
Q 017194 94 RPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHC---LYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSK 170 (375)
Q Consensus 94 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~ 170 (375)
++++.+-+|...|..+.|+. .++++++.|.++.+||+.... +.+.+. +|...|+.+.|+.. ++++++.|.+
T Consensus 268 e~l~tlihHceaVLhlrf~n--g~mvtcSkDrsiaVWdm~sps~it~rrVLv-GHrAaVNvVdfd~k---yIVsASgDRT 341 (499)
T KOG0281|consen 268 EPLNTLIHHCEAVLHLRFSN--GYMVTCSKDRSIAVWDMASPTDITLRRVLV-GHRAAVNVVDFDDK---YIVSASGDRT 341 (499)
T ss_pred chhhHHhhhcceeEEEEEeC--CEEEEecCCceeEEEeccCchHHHHHHHHh-hhhhheeeeccccc---eEEEecCCce
Confidence 45566667899999999974 499999999999999998653 345566 99999999999754 7999999999
Q ss_pred EEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCcceeecccccC
Q 017194 171 LVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTT 250 (375)
Q Consensus 171 i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~ 250 (375)
|++|++.+++.+.++.. |...|-++.+ .++++++|+.|.+|++||+..+
T Consensus 342 ikvW~~st~efvRtl~g-------------HkRGIAClQY--------r~rlvVSGSSDntIRlwdi~~G---------- 390 (499)
T KOG0281|consen 342 IKVWSTSTCEFVRTLNG-------------HKRGIACLQY--------RDRLVVSGSSDNTIRLWDIECG---------- 390 (499)
T ss_pred EEEEeccceeeehhhhc-------------ccccceehhc--------cCeEEEecCCCceEEEEecccc----------
Confidence 99999999999998873 4667778777 6999999999999999999975
Q ss_pred CCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEecCCCeEEEEeCCCceeeee
Q 017194 251 KPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQT 330 (375)
Q Consensus 251 ~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 330 (375)
.++..+.||+.-|.++.|. .+.+++|+.||+|++||+..+.....
T Consensus 391 ------------------------------~cLRvLeGHEeLvRciRFd-----~krIVSGaYDGkikvWdl~aaldpra 435 (499)
T KOG0281|consen 391 ------------------------------ACLRVLEGHEELVRCIRFD-----NKRIVSGAYDGKIKVWDLQAALDPRA 435 (499)
T ss_pred ------------------------------HHHHHHhchHHhhhheeec-----CceeeeccccceEEEEecccccCCcc
Confidence 5667899999999999985 57899999999999999998865444
Q ss_pred cchhhhhhhhcccccceeeeeecCCCCCcEEEeeCCCeEEEEec
Q 017194 331 SINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSI 374 (375)
Q Consensus 331 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~iw~~ 374 (375)
....-++..+..|++.|..+.| |...+++++.|.+|.|||+
T Consensus 436 ~~~~~Cl~~lv~hsgRVFrLQF---D~fqIvsssHddtILiWdF 476 (499)
T KOG0281|consen 436 PASTLCLRTLVEHSGRVFRLQF---DEFQIISSSHDDTILIWDF 476 (499)
T ss_pred cccchHHHhhhhccceeEEEee---cceEEEeccCCCeEEEEEc
Confidence 4444577888899999999999 6678999999999999997
No 26
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=4.3e-41 Score=245.35 Aligned_cols=280 Identities=16% Similarity=0.223 Sum_probs=236.6
Q ss_pred cCCCCCeeeecCCCceeEEEEecCCCCEEEEeCCCCcEEEEecccCce--eeEeeecCccEEEEEEeCCCCeEEEEcCCC
Q 017194 3 DAEAKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDV--QLVTDVGNGPVTSLCFKSGNEDIIYVSSGK 80 (375)
Q Consensus 3 ~~~~~~~~l~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~--~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~ 80 (375)
.++.+.++++..++.|+.+...|+ ++.||+|+.. .|++||++++.+ +.++.+|+..|+++.|..+|+.+++|+.||
T Consensus 28 ~tG~C~rTiqh~dsqVNrLeiTpd-k~~LAaa~~q-hvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDg 105 (311)
T KOG0315|consen 28 LTGICSRTIQHPDSQVNRLEITPD-KKDLAAAGNQ-HVRLYDLNSNNPNPVATFEGHTKNVTAVGFQCDGRWMYTGSEDG 105 (311)
T ss_pred hcCeEEEEEecCccceeeEEEcCC-cchhhhccCC-eeEEEEccCCCCCceeEEeccCCceEEEEEeecCeEEEecCCCc
Confidence 367888899988889999999999 8889988864 799999998764 889999999999999999999999999999
Q ss_pred eEEEEECCCCCcccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCceeeeeEecCcccceeEEEEeeCCCc
Q 017194 81 EVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPW 160 (375)
Q Consensus 81 ~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 160 (375)
+++|||++.....+ .+ .|..+|+++..+|+...|++|..+|.|++||+....+...+.......|.++...|+|.
T Consensus 106 t~kIWdlR~~~~qR---~~-~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgs- 180 (311)
T KOG0315|consen 106 TVKIWDLRSLSCQR---NY-QHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGS- 180 (311)
T ss_pred eEEEEeccCcccch---hc-cCCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCc-
Confidence 99999999633322 22 24689999999999999999999999999999987666555435567899999999999
Q ss_pred EEEEeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCc
Q 017194 161 EVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESE 240 (375)
Q Consensus 161 ~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~ 240 (375)
+++.+...|++++|++-.......+..- .....|...+....++| ++++|++++.|.+++||+..+.
T Consensus 181 ml~a~nnkG~cyvW~l~~~~~~s~l~P~-------~k~~ah~~~il~C~lSP------d~k~lat~ssdktv~iwn~~~~ 247 (311)
T KOG0315|consen 181 MLAAANNKGNCYVWRLLNHQTASELEPV-------HKFQAHNGHILRCLLSP------DVKYLATCSSDKTVKIWNTDDF 247 (311)
T ss_pred EEEEecCCccEEEEEccCCCccccceEh-------hheecccceEEEEEECC------CCcEEEeecCCceEEEEecCCc
Confidence 7999999999999999775433332211 11223578899999999 8999999999999999999863
Q ss_pred ceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEecCCCeEEEE
Q 017194 241 LNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVW 320 (375)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iw 320 (375)
++....+.+|+..++..+|| .||+||++|+.|+.+++|
T Consensus 248 ---------------------------------------~kle~~l~gh~rWvWdc~FS---~dg~YlvTassd~~~rlW 285 (311)
T KOG0315|consen 248 ---------------------------------------FKLELVLTGHQRWVWDCAFS---ADGEYLVTASSDHTARLW 285 (311)
T ss_pred ---------------------------------------eeeEEEeecCCceEEeeeec---cCccEEEecCCCCceeec
Confidence 35556888999999999999 999999999999999999
Q ss_pred eCCCceeeeecchhhhhhhhcccccceeeeeec
Q 017194 321 DCSRFQGVQTSINNDLLIKNINLNKKVNWLCTT 353 (375)
Q Consensus 321 d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 353 (375)
++..+ +.++...+|.....+++..
T Consensus 286 ~~~~~---------k~v~qy~gh~K~~vc~~ln 309 (311)
T KOG0315|consen 286 DLSAG---------KEVRQYQGHHKAAVCVALN 309 (311)
T ss_pred ccccC---------ceeeecCCcccccEEEEee
Confidence 99999 6677888888888777653
No 27
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=4.7e-41 Score=250.68 Aligned_cols=251 Identities=17% Similarity=0.253 Sum_probs=223.5
Q ss_pred CCCCCeeeecCCCceeEEEEecCCCCEEEEeCCCCcEEEEecccC------ceeeEeeecCccEEEEEEeCCCCeEEEEc
Q 017194 4 AEAKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSK------DVQLVTDVGNGPVTSLCFKSGNEDIIYVS 77 (375)
Q Consensus 4 ~~~~~~~l~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~------~~~~~~~~~~~~v~~l~~~~~~~~l~~~~ 77 (375)
|..+++.+.-....|..++|+|. ++++|+|+.|+...||++.+. ...+.+.+|++.+.++.|.+|+ +|++++
T Consensus 86 TtnK~haipl~s~WVMtCA~sPS-g~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~-~ilT~S 163 (343)
T KOG0286|consen 86 TTNKVHAIPLPSSWVMTCAYSPS-GNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDN-HILTGS 163 (343)
T ss_pred cccceeEEecCceeEEEEEECCC-CCeEEecCcCceeEEEecccccccccceeeeeecCccceeEEEEEcCCC-ceEecC
Confidence 44455666666788999999999 999999999999999999865 2356688999999999998855 699999
Q ss_pred CCCeEEEEECCCCCcccccccccCCCcceeEEEEcC-CCCeEEEEeCCCcEEEEeCcCceeeeeEecCcccceeEEEEee
Q 017194 78 SGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNP-KSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIP 156 (375)
Q Consensus 78 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~ 156 (375)
.|.+..+||++++ +.+..+.+|.+.|.++.++| +++.+++|+-|+..++||++.+..++.|. +|+..|++++|.|
T Consensus 164 GD~TCalWDie~g---~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~-ghesDINsv~ffP 239 (343)
T KOG0286|consen 164 GDMTCALWDIETG---QQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFE-GHESDINSVRFFP 239 (343)
T ss_pred CCceEEEEEcccc---eEEEEecCCcccEEEEecCCCCCCeEEecccccceeeeeccCcceeEeec-ccccccceEEEcc
Confidence 9999999999976 55667779999999999999 99999999999999999999999999999 9999999999999
Q ss_pred CCCcEEEEeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEe
Q 017194 157 WKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVIN 236 (375)
Q Consensus 157 ~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d 236 (375)
+|. -|++|+.|++.++||++..+.+..+.... ....|++++|+. .|++|++|..|..+.+||
T Consensus 240 ~G~-afatGSDD~tcRlyDlRaD~~~a~ys~~~-----------~~~gitSv~FS~------SGRlLfagy~d~~c~vWD 301 (343)
T KOG0286|consen 240 SGD-AFATGSDDATCRLYDLRADQELAVYSHDS-----------IICGITSVAFSK------SGRLLFAGYDDFTCNVWD 301 (343)
T ss_pred CCC-eeeecCCCceeEEEeecCCcEEeeeccCc-----------ccCCceeEEEcc------cccEEEeeecCCceeEee
Confidence 998 79999999999999999998888876321 236799999998 799999999999999999
Q ss_pred CCCcceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEecCCCe
Q 017194 237 IESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKL 316 (375)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~dg~ 316 (375)
.-.+ +.+..+.+|...|.++..+ |||.-+++|+.|..
T Consensus 302 tlk~----------------------------------------e~vg~L~GHeNRvScl~~s---~DG~av~TgSWDs~ 338 (343)
T KOG0286|consen 302 TLKG----------------------------------------ERVGVLAGHENRVSCLGVS---PDGMAVATGSWDST 338 (343)
T ss_pred cccc----------------------------------------ceEEEeeccCCeeEEEEEC---CCCcEEEecchhHh
Confidence 8764 3445788999999999999 99999999999999
Q ss_pred EEEEe
Q 017194 317 VKVWD 321 (375)
Q Consensus 317 i~iwd 321 (375)
++||.
T Consensus 339 lriW~ 343 (343)
T KOG0286|consen 339 LRIWA 343 (343)
T ss_pred eeecC
Confidence 99994
No 28
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=6.4e-42 Score=287.45 Aligned_cols=250 Identities=16% Similarity=0.260 Sum_probs=224.7
Q ss_pred eEeeecCccEEEEEEeCCCCeEEEEcCCCeEEEEECCCCC--------c--------------------ccccccccCCC
Q 017194 52 LVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPA--------S--------------------WRPLESYNYNK 103 (375)
Q Consensus 52 ~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i~iwd~~~~~--------~--------------------~~~~~~~~~~~ 103 (375)
.++......++|..|++++..||.|..|..|++|.+...+ . ......+.+|.
T Consensus 372 YT~~nt~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~ 451 (707)
T KOG0263|consen 372 YTFHNTYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHS 451 (707)
T ss_pred EEEEEcCCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCC
Confidence 3344446789999999999999999999999999987311 0 01122356899
Q ss_pred cceeEEEEcCCCCeEEEEeCCCcEEEEeCcCceeeeeEecCcccceeEEEEeeCCCcEEEEeecCCeEEEeeCCCCCcce
Q 017194 104 EEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNK 183 (375)
Q Consensus 104 ~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~ 183 (375)
++|..+.|+|+.++|+++++|+++++|.+.+...+-.++ +|..+|+.+.|+|.|- +||+++.|++.++|.....++++
T Consensus 452 GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~-GH~~PVwdV~F~P~Gy-YFatas~D~tArLWs~d~~~PlR 529 (707)
T KOG0263|consen 452 GPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYK-GHLAPVWDVQFAPRGY-YFATASHDQTARLWSTDHNKPLR 529 (707)
T ss_pred CceeeeeecccccceeeccCCcceeeeecccceeEEEec-CCCcceeeEEecCCce-EEEecCCCceeeeeecccCCchh
Confidence 999999999999999999999999999999999999999 9999999999999986 79999999999999999988888
Q ss_pred EEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCcceeecccccCCCCCCceeecccc
Q 017194 184 IVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVN 263 (375)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g 263 (375)
.+. + |...|.|+.|+| +..++++|+.|.++++||..++
T Consensus 530 ifa-g------------hlsDV~cv~FHP------Ns~Y~aTGSsD~tVRlWDv~~G----------------------- 567 (707)
T KOG0263|consen 530 IFA-G------------HLSDVDCVSFHP------NSNYVATGSSDRTVRLWDVSTG----------------------- 567 (707)
T ss_pred hhc-c------------cccccceEEECC------cccccccCCCCceEEEEEcCCC-----------------------
Confidence 776 3 578899999999 8999999999999999999986
Q ss_pred cceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEecCCCeEEEEeCCCceeeeecchhhhhhhhccc
Q 017194 264 IRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINL 343 (375)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 343 (375)
..++.+.||.++|.+++|| |+|++|++|+.||.|.+||+.++ .++..+.+|
T Consensus 568 -----------------~~VRiF~GH~~~V~al~~S---p~Gr~LaSg~ed~~I~iWDl~~~---------~~v~~l~~H 618 (707)
T KOG0263|consen 568 -----------------NSVRIFTGHKGPVTALAFS---PCGRYLASGDEDGLIKIWDLANG---------SLVKQLKGH 618 (707)
T ss_pred -----------------cEEEEecCCCCceEEEEEc---CCCceEeecccCCcEEEEEcCCC---------cchhhhhcc
Confidence 4456789999999999999 99999999999999999999999 888999999
Q ss_pred ccceeeeeecCCCCCcEEEeeCCCeEEEEecC
Q 017194 344 NKKVNWLCTTPTESENLVVCDTSKVVKVYSIS 375 (375)
Q Consensus 344 ~~~v~~~~~~~~~~~~l~s~~~dg~v~iw~~~ 375 (375)
++.|.++.|+. +|..||+|+.|.+|++||+.
T Consensus 619 t~ti~SlsFS~-dg~vLasgg~DnsV~lWD~~ 649 (707)
T KOG0263|consen 619 TGTIYSLSFSR-DGNVLASGGADNSVRLWDLT 649 (707)
T ss_pred cCceeEEEEec-CCCEEEecCCCCeEEEEEch
Confidence 99999999999 99999999999999999973
No 29
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.7e-41 Score=244.49 Aligned_cols=287 Identities=16% Similarity=0.190 Sum_probs=244.5
Q ss_pred CCCCeeeecCCCceeEEEEecCCCCEEEEeCCCCcEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEEcCCCeEEE
Q 017194 5 EAKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKS 84 (375)
Q Consensus 5 ~~~~~~l~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i~i 84 (375)
.++++.|..|+++|..+.|+-+ |++.++++.|.+|++|+...+.+++++.+|...|..++.+.|+..+++++.|..+.+
T Consensus 7 tkr~~~l~~~qgaV~avryN~d-GnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~v 85 (307)
T KOG0316|consen 7 TKRLSILDCAQGAVRAVRYNVD-GNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQV 85 (307)
T ss_pred chhceeecccccceEEEEEccC-CCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEE
Confidence 3467788999999999999999 999999999999999999999999999999999999999999999999999999999
Q ss_pred EECCCCCcccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCc--eeeeeEecCcccceeEEEEeeCCCcEE
Q 017194 85 FDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQH--CLYKSLRAGHSSICSSVQFIPWKPWEV 162 (375)
Q Consensus 85 wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~l 162 (375)
||+.+++ .+..+.+|.+.|+.++|+.+...+++|+.|..+++||.++. ++++.+. .....|.++..... .+
T Consensus 86 wDV~TGk---v~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQild-ea~D~V~Si~v~~h---eI 158 (307)
T KOG0316|consen 86 WDVNTGK---VDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILD-EAKDGVSSIDVAEH---EI 158 (307)
T ss_pred EEcccCe---eeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhh-hhcCceeEEEeccc---EE
Confidence 9999875 45566778999999999999999999999999999999854 6788888 77889999988765 69
Q ss_pred EEeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCcce
Q 017194 163 ISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELN 242 (375)
Q Consensus 163 ~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~ 242 (375)
++|+.||+++.||++.|+...... ..+|+++.|++ +++..++++.|+++++.|-.++
T Consensus 159 vaGS~DGtvRtydiR~G~l~sDy~---------------g~pit~vs~s~------d~nc~La~~l~stlrLlDk~tG-- 215 (307)
T KOG0316|consen 159 VAGSVDGTVRTYDIRKGTLSSDYF---------------GHPITSVSFSK------DGNCSLASSLDSTLRLLDKETG-- 215 (307)
T ss_pred EeeccCCcEEEEEeecceeehhhc---------------CCcceeEEecC------CCCEEEEeeccceeeecccchh--
Confidence 999999999999999988765543 36899999999 8999999999999999999986
Q ss_pred eecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEecCCCeEEEEeC
Q 017194 243 ISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDC 322 (375)
Q Consensus 243 ~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd~ 322 (375)
+++..+.+|...-+.+..+ +......+++|++||.|++||+
T Consensus 216 --------------------------------------klL~sYkGhkn~eykldc~-l~qsdthV~sgSEDG~Vy~wdL 256 (307)
T KOG0316|consen 216 --------------------------------------KLLKSYKGHKNMEYKLDCC-LNQSDTHVFSGSEDGKVYFWDL 256 (307)
T ss_pred --------------------------------------HHHHHhcccccceeeeeee-ecccceeEEeccCCceEEEEEe
Confidence 4556778887765555432 1156678999999999999999
Q ss_pred CCceeeeecchhhhhhhhcccccc-eeeeeecCCCCCcEEEeeCCCeEEEE
Q 017194 323 SRFQGVQTSINNDLLIKNINLNKK-VNWLCTTPTESENLVVCDTSKVVKVY 372 (375)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~l~s~~~dg~v~iw 372 (375)
... .++..+..+... +.++.++|.. .-|+++.. +.+.+|
T Consensus 257 vd~---------~~~sk~~~~~~v~v~dl~~hp~~-~~f~~A~~-~~~~~~ 296 (307)
T KOG0316|consen 257 VDE---------TQISKLSVVSTVIVTDLSCHPTM-DDFITATG-HGDLFW 296 (307)
T ss_pred ccc---------eeeeeeccCCceeEEeeecccCc-cceeEecC-Cceece
Confidence 998 566666777776 8999999944 44555543 345555
No 30
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.2e-41 Score=276.09 Aligned_cols=291 Identities=16% Similarity=0.261 Sum_probs=261.9
Q ss_pred CCCeeeecCCCceeEEEEecCCCCEEEEeCCCCcEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEEcCCCeEEEE
Q 017194 6 AKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSF 85 (375)
Q Consensus 6 ~~~~~l~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i~iw 85 (375)
...+++..|.+.|.++.|+|. ..+++++-.+|.|.|||.++...++.++....+|.+..|-+..+.+++|+.|..|+||
T Consensus 4 ~~krk~~~rSdRVKsVd~HPt-ePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVf 82 (794)
T KOG0276|consen 4 DFKRKFQSRSDRVKSVDFHPT-EPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVF 82 (794)
T ss_pred hhhhHhhccCCceeeeecCCC-CceEEEeeecCeeEEEecccceeeeeeeecccchhhheeeeccceEEEecCCceEEEE
Confidence 344567779999999999999 8899999999999999999999999999999999999999999999999999999999
Q ss_pred ECCCCCcccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCc-eeeeeEecCcccceeEEEEeeCCCcEEEE
Q 017194 86 DVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQH-CLYKSLRAGHSSICSSVQFIPWKPWEVIS 164 (375)
Q Consensus 86 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~l~~ 164 (375)
+..+. +.+..+..|..-|.+++.+|...+++++++|-+|++||.+.+ .+.++|. +|...|.+++|+|.+++.|++
T Consensus 83 nynt~---ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfe-GH~HyVMqv~fnPkD~ntFaS 158 (794)
T KOG0276|consen 83 NYNTG---EKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFE-GHEHYVMQVAFNPKDPNTFAS 158 (794)
T ss_pred ecccc---eeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEc-CcceEEEEEEecCCCccceee
Confidence 99974 667778889999999999999999999999999999999865 6678888 999999999999998889999
Q ss_pred eecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCcceee
Q 017194 165 GGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNIS 244 (375)
Q Consensus 165 ~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~ 244 (375)
++-|++|++|.+.+..+..+++ + |...|+++.+-+ .++..+|++|+.|..|++||..+.
T Consensus 159 ~sLDrTVKVWslgs~~~nfTl~-g------------HekGVN~Vdyy~----~gdkpylIsgaDD~tiKvWDyQtk---- 217 (794)
T KOG0276|consen 159 ASLDRTVKVWSLGSPHPNFTLE-G------------HEKGVNCVDYYT----GGDKPYLISGADDLTIKVWDYQTK---- 217 (794)
T ss_pred eeccccEEEEEcCCCCCceeee-c------------cccCcceEEecc----CCCcceEEecCCCceEEEeecchH----
Confidence 9999999999999999999998 4 688999999988 345569999999999999999974
Q ss_pred cccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEecCCCeEEEEeCCC
Q 017194 245 RSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSR 324 (375)
Q Consensus 245 ~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd~~~ 324 (375)
.|+.++.+|...|..+.|+ |.-.++++|++||+++||+..+
T Consensus 218 ------------------------------------~CV~TLeGHt~Nvs~v~fh---p~lpiiisgsEDGTvriWhs~T 258 (794)
T KOG0276|consen 218 ------------------------------------SCVQTLEGHTNNVSFVFFH---PELPIIISGSEDGTVRIWNSKT 258 (794)
T ss_pred ------------------------------------HHHHHhhcccccceEEEec---CCCcEEEEecCCccEEEecCcc
Confidence 6788999999999999999 8888999999999999999999
Q ss_pred ceeeeecchhhhhhhhcccccceeeeeecCCCCCcEEEeeCCCeEEE
Q 017194 325 FQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKV 371 (375)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~i 371 (375)
. ++...+.-.-+++++++..+ .+..++.|...|.|.+
T Consensus 259 y---------~lE~tLn~gleRvW~I~~~k-~~~~i~vG~Deg~i~v 295 (794)
T KOG0276|consen 259 Y---------KLEKTLNYGLERVWCIAAHK-GDGKIAVGFDEGSVTV 295 (794)
T ss_pred e---------ehhhhhhcCCceEEEEeecC-CCCeEEEeccCCcEEE
Confidence 8 56666666778999999888 5556888877776643
No 31
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=1.8e-41 Score=284.82 Aligned_cols=276 Identities=22% Similarity=0.317 Sum_probs=237.2
Q ss_pred eecCCCceeEEEEecCCCCEEEEeCCCCcEEEEecccCc-------------------------------eeeEeeecCc
Q 017194 11 LRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKD-------------------------------VQLVTDVGNG 59 (375)
Q Consensus 11 l~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~-------------------------------~~~~~~~~~~ 59 (375)
+.--...++|..|++| +.+||.|..|..|++|.+...+ ...++-+|.+
T Consensus 374 ~~nt~~~v~ca~fSdd-ssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~G 452 (707)
T KOG0263|consen 374 FHNTYQGVTCAEFSDD-SSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSG 452 (707)
T ss_pred EEEcCCcceeEeecCC-cchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCC
Confidence 3333467999999999 8899999999999999987311 1345678999
Q ss_pred cEEEEEEeCCCCeEEEEcCCCeEEEEECCCCCcccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCceeee
Q 017194 60 PVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYK 139 (375)
Q Consensus 60 ~v~~l~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 139 (375)
+|..+.|+|+.++|++++.|+++++|.+.+. ..+-.+.+|..+|..+.|+|.|-++|+++.|++.++|.....++++
T Consensus 453 PVyg~sFsPd~rfLlScSED~svRLWsl~t~---s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~PlR 529 (707)
T KOG0263|consen 453 PVYGCSFSPDRRFLLSCSEDSSVRLWSLDTW---SCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHNKPLR 529 (707)
T ss_pred ceeeeeecccccceeeccCCcceeeeecccc---eeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeecccCCchh
Confidence 9999999999999999999999999999964 5556677899999999999999999999999999999999999999
Q ss_pred eEecCcccceeEEEEeeCCCcEEEEeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCC
Q 017194 140 SLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKT 219 (375)
Q Consensus 140 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 219 (375)
.+. +|.+.|.|+.|+|+.. ++++|+.|.+|++||..+|..++.+. + |..+|.+++|+| +
T Consensus 530 ifa-ghlsDV~cv~FHPNs~-Y~aTGSsD~tVRlWDv~~G~~VRiF~-G------------H~~~V~al~~Sp------~ 588 (707)
T KOG0263|consen 530 IFA-GHLSDVDCVSFHPNSN-YVATGSSDRTVRLWDVSTGNSVRIFT-G------------HKGPVTALAFSP------C 588 (707)
T ss_pred hhc-ccccccceEEECCccc-ccccCCCCceEEEEEcCCCcEEEEec-C------------CCCceEEEEEcC------C
Confidence 999 9999999999999998 69999999999999999999998886 4 689999999999 7
Q ss_pred CCEEEEEecCCcEEEEeCCCcceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEe
Q 017194 220 NKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFS 299 (375)
Q Consensus 220 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 299 (375)
|++|++|+.||.|.+||+.++ ..+..+.+|.+.|.++.||
T Consensus 589 Gr~LaSg~ed~~I~iWDl~~~----------------------------------------~~v~~l~~Ht~ti~SlsFS 628 (707)
T KOG0263|consen 589 GRYLASGDEDGLIKIWDLANG----------------------------------------SLVKQLKGHTGTIYSLSFS 628 (707)
T ss_pred CceEeecccCCcEEEEEcCCC----------------------------------------cchhhhhcccCceeEEEEe
Confidence 999999999999999999975 4566888999999999999
Q ss_pred ecCCCCcEEEEecCCCeEEEEeCCCceeee---------------ecchhhhhhhhcccccceeeeeecC
Q 017194 300 MFGERGKYLISGGNDKLVKVWDCSRFQGVQ---------------TSINNDLLIKNINLNKKVNWLCTTP 354 (375)
Q Consensus 300 ~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~---------------~~~~~~~~~~~~~~~~~v~~~~~~~ 354 (375)
.+|..||+|+.|++|++||+....... ......++..+..-..+|..+.|..
T Consensus 629 ---~dg~vLasgg~DnsV~lWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llgs~~tK~tpv~~l~Ftr 695 (707)
T KOG0263|consen 629 ---RDGNVLASGGADNSVRLWDLTKVIELLNLGHISTSNSAITQENNASSLLLGSFYTKNTPVVGLHFTR 695 (707)
T ss_pred ---cCCCEEEecCCCCeEEEEEchhhcccccccccccccccccccCCCCcceeeeeeecCceEEEEEEec
Confidence 999999999999999999987653320 0011123334444556788888866
No 32
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=100.00 E-value=1e-40 Score=257.32 Aligned_cols=284 Identities=17% Similarity=0.220 Sum_probs=243.9
Q ss_pred CCCceeEEEEecCCCCEEEEeCCCCcEEEEecccCceeeEeeecCccEEEEEEeCCC---CeEEEEcCCCeEEEEECCCC
Q 017194 14 HKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGN---EDIIYVSSGKEVKSFDVHMP 90 (375)
Q Consensus 14 h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~---~~l~~~~~d~~i~iwd~~~~ 90 (375)
|.+.|.++... ++.+++|+.||.+++||.. |+....+.+|.++|.+++|.-.. ..+++++.|.++++|.++.+
T Consensus 104 hdDWVSsv~~~---~~~IltgsYDg~~riWd~~-Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~ 179 (423)
T KOG0313|consen 104 HDDWVSSVKGA---SKWILTGSYDGTSRIWDLK-GKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVG 179 (423)
T ss_pred chhhhhhhccc---CceEEEeecCCeeEEEecC-CceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCc
Confidence 88999988876 4699999999999999965 88899999999999999985433 35999999999999998865
Q ss_pred Cc-ccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCc-------------------------CceeeeeEecC
Q 017194 91 AS-WRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIR-------------------------QHCLYKSLRAG 144 (375)
Q Consensus 91 ~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~-------------------------~~~~~~~~~~~ 144 (375)
.. ...+....+|...|.++...+++..+++|+.|.+|.+|+.. ++.++..+. +
T Consensus 180 ~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~-G 258 (423)
T KOG0313|consen 180 ENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLE-G 258 (423)
T ss_pred hhhhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEec-c
Confidence 43 34455566999999999999999999999999999999932 122455677 9
Q ss_pred cccceeEEEEeeCCCcEEEEeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEE
Q 017194 145 HSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICV 224 (375)
Q Consensus 145 ~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~ 224 (375)
|..+|.++.|++.+ .+.+++.|.+|+.||+.++.....+.. +..++++..+| ..++|+
T Consensus 259 Ht~~Vs~V~w~d~~--v~yS~SwDHTIk~WDletg~~~~~~~~--------------~ksl~~i~~~~------~~~Ll~ 316 (423)
T KOG0313|consen 259 HTEPVSSVVWSDAT--VIYSVSWDHTIKVWDLETGGLKSTLTT--------------NKSLNCISYSP------LSKLLA 316 (423)
T ss_pred cccceeeEEEcCCC--ceEeecccceEEEEEeecccceeeeec--------------CcceeEeeccc------ccceee
Confidence 99999999999954 799999999999999999999888874 47899999999 799999
Q ss_pred EEecCCcEEEEeCCCcceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCC
Q 017194 225 VAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGER 304 (375)
Q Consensus 225 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 304 (375)
+|+.|..|++||.+++. .-....++.+|+..|.++.|+| .+
T Consensus 317 ~gssdr~irl~DPR~~~-------------------------------------gs~v~~s~~gH~nwVssvkwsp--~~ 357 (423)
T KOG0313|consen 317 SGSSDRHIRLWDPRTGD-------------------------------------GSVVSQSLIGHKNWVSSVKWSP--TN 357 (423)
T ss_pred ecCCCCceeecCCCCCC-------------------------------------CceeEEeeecchhhhhheecCC--CC
Confidence 99999999999999742 1234568899999999999995 45
Q ss_pred CcEEEEecCCCeEEEEeCCCceeeeecchhhhhhhhcccccceeeeeecCCCCCcEEEeeCCCeEEEEe
Q 017194 305 GKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYS 373 (375)
Q Consensus 305 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~iw~ 373 (375)
...|++|+.|+++++||+++.+ ..+..+.+|...|.++.|+ ++.+|++|+.|.+|+|+.
T Consensus 358 ~~~~~S~S~D~t~klWDvRS~k--------~plydI~~h~DKvl~vdW~--~~~~IvSGGaD~~l~i~~ 416 (423)
T KOG0313|consen 358 EFQLVSGSYDNTVKLWDVRSTK--------APLYDIAGHNDKVLSVDWN--EGGLIVSGGADNKLRIFK 416 (423)
T ss_pred ceEEEEEecCCeEEEEEeccCC--------CcceeeccCCceEEEEecc--CCceEEeccCcceEEEec
Confidence 5678899999999999999984 3677889999999999996 567999999999999985
No 33
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=8.1e-41 Score=278.51 Aligned_cols=295 Identities=17% Similarity=0.200 Sum_probs=259.9
Q ss_pred CCCCCeeeecCCCceeEEEEecCCCCEEEEeCCCCcEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEEcCCCeEE
Q 017194 4 AEAKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVK 83 (375)
Q Consensus 4 ~~~~~~~l~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i~ 83 (375)
+.+..+.+-|..+.|..|.|-....++||.++..+.+++|+..+..+. .+.+|++.|.++....+|.+|++++.|++++
T Consensus 312 ~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~-ii~GH~e~vlSL~~~~~g~llat~sKD~svi 390 (775)
T KOG0319|consen 312 ELTIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQ-IIPGHTEAVLSLDVWSSGDLLATGSKDKSVI 390 (775)
T ss_pred ccEEehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceE-EEeCchhheeeeeecccCcEEEEecCCceEE
Confidence 455667788999999999986544789999999999999998877764 8899999999999667788999999999999
Q ss_pred EEECCCCC-cccccccccCCCcceeEEEEcCCC-CeEEEEeCCCcEEEEeCcCcee---ee------eEecCcccceeEE
Q 017194 84 SFDVHMPA-SWRPLESYNYNKEEINQIVCNPKS-SFLACADDGGDVKIIDIRQHCL---YK------SLRAGHSSICSSV 152 (375)
Q Consensus 84 iwd~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~---~~------~~~~~~~~~v~~~ 152 (375)
+|.++.+. ....+....+|...|.+++++..+ .+|++++.|+++++|++...+. .. ... .|...|+++
T Consensus 391 lWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~-aHdKdIN~V 469 (775)
T KOG0319|consen 391 LWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTER-AHDKDINCV 469 (775)
T ss_pred EEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHH-hhcccccce
Confidence 99985432 345667778999999999997754 6799999999999999976221 11 223 799999999
Q ss_pred EEeeCCCcEEEEeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcE
Q 017194 153 QFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVV 232 (375)
Q Consensus 153 ~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i 232 (375)
+++|+.+ ++++|+.|.+.++|++........+. + |...+.++.|+| ..+.+++++.|++|
T Consensus 470 aia~ndk-LiAT~SqDktaKiW~le~~~l~~vLs-G------------H~RGvw~V~Fs~------~dq~laT~SgD~Tv 529 (775)
T KOG0319|consen 470 AIAPNDK-LIATGSQDKTAKIWDLEQLRLLGVLS-G------------HTRGVWCVSFSK------NDQLLATCSGDKTV 529 (775)
T ss_pred EecCCCc-eEEecccccceeeecccCceEEEEee-C------------CccceEEEEecc------ccceeEeccCCceE
Confidence 9999998 89999999999999999888888887 4 678999999999 79999999999999
Q ss_pred EEEeCCCcceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEec
Q 017194 233 DVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGG 312 (375)
Q Consensus 233 ~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~ 312 (375)
+||.+.+. .++.++.||...|..+.|- .+|+.|++++
T Consensus 530 KIW~is~f----------------------------------------SClkT~eGH~~aVlra~F~---~~~~qliS~~ 566 (775)
T KOG0319|consen 530 KIWSISTF----------------------------------------SCLKTFEGHTSAVLRASFI---RNGKQLISAG 566 (775)
T ss_pred EEEEeccc----------------------------------------eeeeeecCccceeEeeeee---eCCcEEEecc
Confidence 99999974 7888999999999999999 8999999999
Q ss_pred CCCeEEEEeCCCceeeeecchhhhhhhhcccccceeeeeecCCCCCcEEEeeCCCeEEEEe
Q 017194 313 NDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYS 373 (375)
Q Consensus 313 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~iw~ 373 (375)
.||.|++|++++. +++..+..|.+.|++++.++ ...+++||+.||.|.+|.
T Consensus 567 adGliKlWnikt~---------eC~~tlD~H~DrvWaL~~~~-~~~~~~tgg~Dg~i~~wk 617 (775)
T KOG0319|consen 567 ADGLIKLWNIKTN---------ECEMTLDAHNDRVWALSVSP-LLDMFVTGGGDGRIIFWK 617 (775)
T ss_pred CCCcEEEEeccch---------hhhhhhhhccceeEEEeecC-ccceeEecCCCeEEEEee
Confidence 9999999999999 89999999999999999999 778999999999999995
No 34
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=9.4e-40 Score=239.09 Aligned_cols=285 Identities=16% Similarity=0.193 Sum_probs=240.4
Q ss_pred eEEEEecCCCCEEEEeC-------CCCcEEEEecccCceeeEeee--cCccEEEEEEeCCC-CeEEEEcCCCeEEEEECC
Q 017194 19 TCCIASRDRPGFVASSG-------EDGCICWFDLRSKDVQLVTDV--GNGPVTSLCFKSGN-EDIIYVSSGKEVKSFDVH 88 (375)
Q Consensus 19 ~~~~~~~~~~~~l~s~~-------~d~~i~iw~~~~~~~~~~~~~--~~~~v~~l~~~~~~-~~l~~~~~d~~i~iwd~~ 88 (375)
+++.|+|--.++||.+. ..|.+.|.++...+-+..+.. -.+.+..++|+++. +.+++++.||++++||+.
T Consensus 12 ysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~ 91 (311)
T KOG0277|consen 12 YSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDLT 91 (311)
T ss_pred ceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEEEEeeecccceeEeeecCCCcceEEEEecCceEEEeccC
Confidence 67899997555655542 368899999875544444432 36889999999864 568888999999999954
Q ss_pred CCCcccccccccCCCcceeEEEEcCC-CCeEEEEeCCCcEEEEeCcCceeeeeEecCcccceeEEEEeeCCCcEEEEeec
Q 017194 89 MPASWRPLESYNYNKEEINQIVCNPK-SSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGL 167 (375)
Q Consensus 89 ~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~ 167 (375)
. ...++..++.|..+|.++.|++. .+.+++++.|++|++|+...++.+.++. +|...|...+|+|..+.++++++.
T Consensus 92 ~--~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~-gh~~~Iy~a~~sp~~~nlfas~Sg 168 (311)
T KOG0277|consen 92 M--PSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFN-GHNSCIYQAAFSPHIPNLFASASG 168 (311)
T ss_pred C--CCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeec-CCccEEEEEecCCCCCCeEEEccC
Confidence 3 45688899999999999999994 5567888999999999999999999999 999999999999998889999999
Q ss_pred CCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCcceeeccc
Q 017194 168 DSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSK 247 (375)
Q Consensus 168 d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 247 (375)
|+.+++||++.......++. |...+.+..|+.. +...|++|+.|+.|+.||++..+
T Consensus 169 d~~l~lwdvr~~gk~~~i~a-------------h~~Eil~cdw~ky-----~~~vl~Tg~vd~~vr~wDir~~r------ 224 (311)
T KOG0277|consen 169 DGTLRLWDVRSPGKFMSIEA-------------HNSEILCCDWSKY-----NHNVLATGGVDNLVRGWDIRNLR------ 224 (311)
T ss_pred CceEEEEEecCCCceeEEEe-------------ccceeEeeccccc-----CCcEEEecCCCceEEEEehhhcc------
Confidence 99999999987655555664 3578999999875 88999999999999999999743
Q ss_pred ccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEecCCCeEEEEeCCCcee
Q 017194 248 STTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQG 327 (375)
Q Consensus 248 ~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd~~~~~~ 327 (375)
..+.++.+|.-.|+.++||| ....+||+++.|-+++|||.....
T Consensus 225 ---------------------------------~pl~eL~gh~~AVRkvk~Sp--h~~~lLaSasYDmT~riw~~~~~d- 268 (311)
T KOG0277|consen 225 ---------------------------------TPLFELNGHGLAVRKVKFSP--HHASLLASASYDMTVRIWDPERQD- 268 (311)
T ss_pred ---------------------------------ccceeecCCceEEEEEecCc--chhhHhhhccccceEEecccccch-
Confidence 34568899999999999997 345699999999999999998764
Q ss_pred eeecchhhhhhhhcccccceeeeeecCCCCCcEEEeeCCCeEEEEe
Q 017194 328 VQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYS 373 (375)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~iw~ 373 (375)
..+.....|+.-+..+.|++.++.++|+++-|+.++||+
T Consensus 269 -------s~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~ 307 (311)
T KOG0277|consen 269 -------SAIETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWN 307 (311)
T ss_pred -------hhhhhhhccceEEeccccccccCceeeecccccceeeec
Confidence 566677789999999999998999999999999999997
No 35
>PLN00181 protein SPA1-RELATED; Provisional
Probab=100.00 E-value=2.4e-38 Score=291.99 Aligned_cols=298 Identities=18% Similarity=0.231 Sum_probs=236.7
Q ss_pred eecCCCceeEEEEecCCCCEEEEeCCCCcEEEEecccCc--------eeeEeeecCccEEEEEEeC-CCCeEEEEcCCCe
Q 017194 11 LRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKD--------VQLVTDVGNGPVTSLCFKS-GNEDIIYVSSGKE 81 (375)
Q Consensus 11 l~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~--------~~~~~~~~~~~v~~l~~~~-~~~~l~~~~~d~~ 81 (375)
+..|.+.|.+++|+|+ +++||+|+.|+.|+||+..+.. ....+. +...+.+++|++ ++.+|++++.|+.
T Consensus 479 ~~~~~~~V~~i~fs~d-g~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~-~~~~v~~l~~~~~~~~~las~~~Dg~ 556 (793)
T PLN00181 479 LLNSSNLVCAIGFDRD-GEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELA-SRSKLSGICWNSYIKSQVASSNFEGV 556 (793)
T ss_pred ccCCCCcEEEEEECCC-CCEEEEEeCCCEEEEEECCcccccccccccceEEec-ccCceeeEEeccCCCCEEEEEeCCCe
Confidence 4569999999999998 8999999999999999975421 122233 356899999987 4778999999999
Q ss_pred EEEEECCCCCcccccccccCCCcceeEEEEcC-CCCeEEEEeCCCcEEEEeCcCceeeeeEecCcccceeEEEEee-CCC
Q 017194 82 VKSFDVHMPASWRPLESYNYNKEEINQIVCNP-KSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIP-WKP 159 (375)
Q Consensus 82 i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~-~~~ 159 (375)
|++||+.+++ .+..+.+|...|.+++|+| ++.+|++|+.|+.|++||++++..+..+. .+ ..+.++.|.+ ++.
T Consensus 557 v~lWd~~~~~---~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~-~~-~~v~~v~~~~~~g~ 631 (793)
T PLN00181 557 VQVWDVARSQ---LVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIK-TK-ANICCVQFPSESGR 631 (793)
T ss_pred EEEEECCCCe---EEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEe-cC-CCeEEEEEeCCCCC
Confidence 9999998653 4455677899999999997 78899999999999999999998888887 44 6899999965 455
Q ss_pred cEEEEeecCCeEEEeeCCCCC-cceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCC
Q 017194 160 WEVISGGLDSKLVMWDFSKGR-PNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIE 238 (375)
Q Consensus 160 ~~l~~~~~d~~i~~wd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~ 238 (375)
.|++|+.||.|++||+++.+ .+..+. + |...|.++.|.+ +..+++++.|+.|++||++
T Consensus 632 -~latgs~dg~I~iwD~~~~~~~~~~~~-~------------h~~~V~~v~f~~-------~~~lvs~s~D~~ikiWd~~ 690 (793)
T PLN00181 632 -SLAFGSADHKVYYYDLRNPKLPLCTMI-G------------HSKTVSYVRFVD-------SSTLVSSSTDNTLKLWDLS 690 (793)
T ss_pred -EEEEEeCCCeEEEEECCCCCccceEec-C------------CCCCEEEEEEeC-------CCEEEEEECCCEEEEEeCC
Confidence 89999999999999998765 344443 3 567899999974 7899999999999999997
Q ss_pred CcceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEecCCCeEE
Q 017194 239 SELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVK 318 (375)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~dg~i~ 318 (375)
.... ......+..+.+|...+..++|+ +++.+|++|+.|+.|+
T Consensus 691 ~~~~----------------------------------~~~~~~l~~~~gh~~~i~~v~~s---~~~~~lasgs~D~~v~ 733 (793)
T PLN00181 691 MSIS----------------------------------GINETPLHSFMGHTNVKNFVGLS---VSDGYIATGSETNEVF 733 (793)
T ss_pred CCcc----------------------------------ccCCcceEEEcCCCCCeeEEEEc---CCCCEEEEEeCCCEEE
Confidence 5310 00113455788999999999999 8999999999999999
Q ss_pred EEeCCCceeeeec--chhhhh--hhhcccccceeeeeecCCCCCcEEEeeCCCeEEEEec
Q 017194 319 VWDCSRFQGVQTS--INNDLL--IKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSI 374 (375)
Q Consensus 319 iwd~~~~~~~~~~--~~~~~~--~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~iw~~ 374 (375)
+|+.......... .....+ .....|...|.+++|+| ++..|++|+.||.|+||++
T Consensus 734 iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~-~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 734 VYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRG-QSSTLVAANSTGNIKILEM 792 (793)
T ss_pred EEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcC-CCCeEEEecCCCcEEEEec
Confidence 9998765322100 000000 11234667899999999 9999999999999999996
No 36
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=6.3e-39 Score=267.86 Aligned_cols=327 Identities=17% Similarity=0.182 Sum_probs=252.1
Q ss_pred CCCeeeecCCCceeEEEEecCCCCEEEEeCCCCcEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEEcCCCeEEEE
Q 017194 6 AKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSF 85 (375)
Q Consensus 6 ~~~~~l~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i~iw 85 (375)
..+-++.||+..|+++.|... |..||||+.|+.|.+||+-...-+..+.+|++.|+..-|..+.+.+++.+.|+.|++|
T Consensus 98 ~~~~tfngHK~AVt~l~fd~~-G~rlaSGskDt~IIvwDlV~E~Gl~rL~GHkd~iT~~~F~~~~~~lvS~sKDs~iK~W 176 (888)
T KOG0306|consen 98 EILITFNGHKAAVTTLKFDKI-GTRLASGSKDTDIIVWDLVGEEGLFRLRGHKDSITQALFLNGDSFLVSVSKDSMIKFW 176 (888)
T ss_pred ceeeeecccccceEEEEEccc-CceEeecCCCccEEEEEeccceeeEEeecchHHHhHHhccCCCeEEEEeccCceEEEE
Confidence 556788999999999999999 8999999999999999998888899999999999999998878899999999999999
Q ss_pred ECCCCCcccccccccC----------------------------------------------------------------
Q 017194 86 DVHMPASWRPLESYNY---------------------------------------------------------------- 101 (375)
Q Consensus 86 d~~~~~~~~~~~~~~~---------------------------------------------------------------- 101 (375)
|+++.. .+.+.-.
T Consensus 177 dL~tqh---Cf~Thvd~r~Eiw~l~~~~~~lvt~~~dse~~v~~L~~~~D~~~~~~~~s~~~~G~~~rqsk~R~i~l~~d 253 (888)
T KOG0306|consen 177 DLETQH---CFETHVDHRGEIWALVLDEKLLVTAGTDSELKVWELAFEDDEKETNRYISTKLRGTFIRQSKGREINLVTD 253 (888)
T ss_pred ecccce---eeeEEecccceEEEEEEecceEEEEecCCceEEEEeecccccccccccceeeccceeeeccCCceeEEeec
Confidence 998732 2222222
Q ss_pred --------------------------------------------------------------------------------
Q 017194 102 -------------------------------------------------------------------------------- 101 (375)
Q Consensus 102 -------------------------------------------------------------------------------- 101 (375)
T Consensus 254 ~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~r~~~ir~~~kiks~dv~~~~~ 333 (888)
T KOG0306|consen 254 FSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDVEKSLSDEIKRLETIRTSAKIKSFDVTPSGG 333 (888)
T ss_pred CcccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHheechhheeEEEEEecCC
Confidence
Q ss_pred --------------------------------------CCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCceeeeeEec
Q 017194 102 --------------------------------------NKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRA 143 (375)
Q Consensus 102 --------------------------------------~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 143 (375)
|...|.+++++.+...+++|+ .+.+++|+..+.++++++.
T Consensus 334 ~~~~lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~d~~~~~Sga-~~SikiWn~~t~kciRTi~- 411 (888)
T KOG0306|consen 334 TENTLVLLANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVSSDSILLASGA-GESIKIWNRDTLKCIRTIT- 411 (888)
T ss_pred cceeEEEeecCceEEEEeccCCCCCccccccceeeeccchhheeEEEeecCceeeeecC-CCcEEEEEccCcceeEEec-
Confidence 334445555555544444442 3456666666566665555
Q ss_pred CcccceeEEEEeeCCCcEEEEeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEE
Q 017194 144 GHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKIC 223 (375)
Q Consensus 144 ~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l 223 (375)
...+.+..|.|.+. ++++|...|.+.+||+.+...+.+++. |.+.+.+++.+| +++.+
T Consensus 412 --~~y~l~~~Fvpgd~-~Iv~G~k~Gel~vfdlaS~~l~Eti~A-------------HdgaIWsi~~~p------D~~g~ 469 (888)
T KOG0306|consen 412 --CGYILASKFVPGDR-YIVLGTKNGELQVFDLASASLVETIRA-------------HDGAIWSISLSP------DNKGF 469 (888)
T ss_pred --cccEEEEEecCCCc-eEEEeccCCceEEEEeehhhhhhhhhc-------------cccceeeeeecC------CCCce
Confidence 22555666666655 466666666666666666655555552 688999999999 89999
Q ss_pred EEEecCCcEEEEeCCCcce------e-ec----ccccCCCCCCceeecccccceeeee---eeecCCcceeEeeeeecCC
Q 017194 224 VVAKGDGVVDVINIESELN------I-SR----SKSTTKPLKGSQSTSKVNIRDAEME---ILDQSGGKRLHLDYSVGGH 289 (375)
Q Consensus 224 ~~~~~dg~i~i~d~~~~~~------~-~~----~~~~~~~~~~~~~~s~~g~~~~~~~---~~~~~~~~~~~~~~~~~~~ 289 (375)
++|+.|.+|++||..-... . .. ........+.++++||||++++..- ..-..-...++....+.||
T Consensus 470 vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYGH 549 (888)
T KOG0306|consen 470 VTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGH 549 (888)
T ss_pred EEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeeeccc
Confidence 9999999999999763211 0 00 1122345677889999999998521 1112223456777789999
Q ss_pred CccEEEEEEeecCCCCcEEEEecCCCeEEEEeCCCceeeeecchhhhhhhhcccccceeeeeecCCCCCcEEEeeCCCeE
Q 017194 290 TAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVV 369 (375)
Q Consensus 290 ~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v 369 (375)
.-||.++.+| ||+++++|||.|..|+||-++-+ .+.+.+.+|.+.|.++.|.| ....+.++|.|+.|
T Consensus 550 kLPV~smDIS---~DSklivTgSADKnVKiWGLdFG---------DCHKS~fAHdDSvm~V~F~P-~~~~FFt~gKD~kv 616 (888)
T KOG0306|consen 550 KLPVLSMDIS---PDSKLIVTGSADKNVKIWGLDFG---------DCHKSFFAHDDSVMSVQFLP-KTHLFFTCGKDGKV 616 (888)
T ss_pred ccceeEEecc---CCcCeEEeccCCCceEEeccccc---------hhhhhhhcccCceeEEEEcc-cceeEEEecCcceE
Confidence 9999999999 99999999999999999999999 88999999999999999999 78899999999999
Q ss_pred EEEe
Q 017194 370 KVYS 373 (375)
Q Consensus 370 ~iw~ 373 (375)
+-||
T Consensus 617 KqWD 620 (888)
T KOG0306|consen 617 KQWD 620 (888)
T ss_pred Eeec
Confidence 9997
No 37
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=3.3e-40 Score=250.28 Aligned_cols=286 Identities=16% Similarity=0.201 Sum_probs=249.6
Q ss_pred cCCCceeEEEEecCCCCEEEEeCCCCcEEEEecccCceeeEee--------ecCccEEEEEEeCCCCeEEEEcCCCeEEE
Q 017194 13 GHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTD--------VGNGPVTSLCFKSGNEDIIYVSSGKEVKS 84 (375)
Q Consensus 13 ~h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~--------~~~~~v~~l~~~~~~~~l~~~~~d~~i~i 84 (375)
|.++-+-|..|+|| +++|++|+.||.|.+||..+|+..+.++ -+..+|.|+.|+.|...+++|+.||.|++
T Consensus 211 g~KSh~EcA~FSPD-gqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKv 289 (508)
T KOG0275|consen 211 GQKSHVECARFSPD-GQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKV 289 (508)
T ss_pred ccccchhheeeCCC-CceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEE
Confidence 45677889999999 9999999999999999999998755443 36789999999999999999999999999
Q ss_pred EECCCCCcccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCceeeeeEecCcccceeEEEEeeCCCcEEEE
Q 017194 85 FDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVIS 164 (375)
Q Consensus 85 wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~ 164 (375)
|.++++.+++.+.. .|...|+++.|+.|+..+++++.|.++++.-+++|++++.++ +|.+.|+...|.++|. .+++
T Consensus 290 Wri~tG~ClRrFdr--AHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfr-GHsSyvn~a~ft~dG~-~iis 365 (508)
T KOG0275|consen 290 WRIETGQCLRRFDR--AHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFR-GHSSYVNEATFTDDGH-HIIS 365 (508)
T ss_pred EEEecchHHHHhhh--hhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhc-CccccccceEEcCCCC-eEEE
Confidence 99999877666543 578999999999999999999999999999999999999999 9999999999999999 7999
Q ss_pred eecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCcceee
Q 017194 165 GGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNIS 244 (375)
Q Consensus 165 ~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~ 244 (375)
++.||+|++|+..+.+++.+++... ...+|+++-.-|. +...++++...+++++.++..
T Consensus 366 aSsDgtvkvW~~KtteC~~Tfk~~~-----------~d~~vnsv~~~PK-----npeh~iVCNrsntv~imn~qG----- 424 (508)
T KOG0275|consen 366 ASSDGTVKVWHGKTTECLSTFKPLG-----------TDYPVNSVILLPK-----NPEHFIVCNRSNTVYIMNMQG----- 424 (508)
T ss_pred ecCCccEEEecCcchhhhhhccCCC-----------CcccceeEEEcCC-----CCceEEEEcCCCeEEEEeccc-----
Confidence 9999999999999999999987441 3467888888775 678899999999999999885
Q ss_pred cccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeec---CCCccEEEEEEeecCCCCcEEEEecCCCeEEEEe
Q 017194 245 RSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVG---GHTAAASCVAFSMFGERGKYLISGGNDKLVKVWD 321 (375)
Q Consensus 245 ~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd 321 (375)
+.+..+. ...+..-+...| |.|.++.+.++|+.++.|.
T Consensus 425 ------------------------------------QvVrsfsSGkREgGdFi~~~lS---pkGewiYcigED~vlYCF~ 465 (508)
T KOG0275|consen 425 ------------------------------------QVVRSFSSGKREGGDFINAILS---PKGEWIYCIGEDGVLYCFS 465 (508)
T ss_pred ------------------------------------eEEeeeccCCccCCceEEEEec---CCCcEEEEEccCcEEEEEE
Confidence 2222332 123445556678 9999999999999999999
Q ss_pred CCCceeeeecchhhhhhhhcccccceeeeeecCCCCCcEEEeeCCCeEEEEe
Q 017194 322 CSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYS 373 (375)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~iw~ 373 (375)
+.++ .+...+.-|...+..++-+| ..+.|++-++||.+++|.
T Consensus 466 ~~sG---------~LE~tl~VhEkdvIGl~HHP-HqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 466 VLSG---------KLERTLPVHEKDVIGLTHHP-HQNLLASYSEDGLLKLWK 507 (508)
T ss_pred eecC---------ceeeeeecccccccccccCc-ccchhhhhcccchhhhcC
Confidence 9999 77778888999999999999 778999999999999995
No 38
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=100.00 E-value=3e-38 Score=232.85 Aligned_cols=296 Identities=14% Similarity=0.128 Sum_probs=241.2
Q ss_pred eeeecCCCceeEEEEecCCCCEEEEeCCCCcEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEEcCCCeEEEEECC
Q 017194 9 RRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVH 88 (375)
Q Consensus 9 ~~l~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i~iwd~~ 88 (375)
-.|+||+.+++.+.++.+ |.+|.+++.|.+..+|-..+|+.+.++.+|.+.|+++....+.+++++|+.|.++++||++
T Consensus 4 i~l~GHERplTqiKyN~e-GDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~ 82 (327)
T KOG0643|consen 4 ILLQGHERPLTQIKYNRE-GDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVE 82 (327)
T ss_pred cccccCccccceEEecCC-CcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcC
Confidence 458999999999999999 9999999999999999998999999999999999999999999999999999999999999
Q ss_pred CCCcccccccccCCCcceeEEEEcCCCCeEEEEeC-----CCcEEEEeCc-------CceeeeeEecCcccceeEEEEee
Q 017194 89 MPASWRPLESYNYNKEEINQIVCNPKSSFLACADD-----GGDVKIIDIR-------QHCLYKSLRAGHSSICSSVQFIP 156 (375)
Q Consensus 89 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-----dg~i~iwd~~-------~~~~~~~~~~~~~~~v~~~~~~~ 156 (375)
+++.+...+. ..+|..+.|++++++++...+ .+.|.++|++ ..++...+. .+.+.++.+-|.|
T Consensus 83 tGk~la~~k~----~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~-t~~skit~a~Wg~ 157 (327)
T KOG0643|consen 83 TGKQLATWKT----NSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIP-TPDSKITSALWGP 157 (327)
T ss_pred CCcEEEEeec----CCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEec-CCccceeeeeecc
Confidence 9987776665 689999999999999887754 4679999998 345566777 7889999999999
Q ss_pred CCCcEEEEeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEe
Q 017194 157 WKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVIN 236 (375)
Q Consensus 157 ~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d 236 (375)
-++ .|++|.+||.|..||+++++.+..-... |...|+.+.+++ +..++++++.|.+-++||
T Consensus 158 l~~-~ii~Ghe~G~is~~da~~g~~~v~s~~~------------h~~~Ind~q~s~------d~T~FiT~s~Dttakl~D 218 (327)
T KOG0643|consen 158 LGE-TIIAGHEDGSISIYDARTGKELVDSDEE------------HSSKINDLQFSR------DRTYFITGSKDTTAKLVD 218 (327)
T ss_pred cCC-EEEEecCCCcEEEEEcccCceeeechhh------------hccccccccccC------CcceEEecccCccceeee
Confidence 999 7999999999999999998665544322 567999999999 899999999999999999
Q ss_pred CCCcceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEecCCCe
Q 017194 237 IESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKL 316 (375)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~dg~ 316 (375)
..+. .+++++.. ..||++.+++ |-...++.|+....
T Consensus 219 ~~tl----------------------------------------~v~Kty~t-e~PvN~aais---P~~d~VilgGGqeA 254 (327)
T KOG0643|consen 219 VRTL----------------------------------------EVLKTYTT-ERPVNTAAIS---PLLDHVILGGGQEA 254 (327)
T ss_pred ccce----------------------------------------eeEEEeee-cccccceecc---cccceEEecCCcee
Confidence 9973 34444443 5789999999 65555555543221
Q ss_pred --EEEEeCCCceeee---ecchhhhhhhhcccccceeeeeecCCCCCcEEEeeCCCeEEEEec
Q 017194 317 --VKVWDCSRFQGVQ---TSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSI 374 (375)
Q Consensus 317 --i~iwd~~~~~~~~---~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~iw~~ 374 (375)
|.-=+.+.++... ..--.+.+....+|-++|++++|+| +|+..++|++||.|++..+
T Consensus 255 ~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhP-dGksYsSGGEDG~VR~h~F 316 (327)
T KOG0643|consen 255 MDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHP-DGKSYSSGGEDGYVRLHHF 316 (327)
T ss_pred eeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECC-CCcccccCCCCceEEEEEe
Confidence 2222222221111 0011144556789999999999999 9999999999999999765
No 39
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=1.7e-40 Score=258.46 Aligned_cols=249 Identities=18% Similarity=0.248 Sum_probs=219.3
Q ss_pred eeecCCCceeEEEEecCCCCEEEEeCCCCcEEEEecccCceeeEeeec-CccEEEEEEeCCCCeEEEEcCCCeEEEEECC
Q 017194 10 RLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVG-NGPVTSLCFKSGNEDIIYVSSGKEVKSFDVH 88 (375)
Q Consensus 10 ~l~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~-~~~v~~l~~~~~~~~l~~~~~d~~i~iwd~~ 88 (375)
.++.|+++|+++.|+++ +.+++||+.+|.|++|+..-. .++.++.| ...|.+++|+|+...+++++.||+|+|||..
T Consensus 133 ilQaHDs~Vr~m~ws~~-g~wmiSgD~gG~iKyWqpnmn-nVk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~ 210 (464)
T KOG0284|consen 133 ILQAHDSPVRTMKWSHN-GTWMISGDKGGMIKYWQPNMN-NVKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFR 210 (464)
T ss_pred HhhhhcccceeEEEccC-CCEEEEcCCCceEEecccchh-hhHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEecc
Confidence 46789999999999999 899999999999999997644 45555554 5999999999999999999999999999988
Q ss_pred CCCcccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCceeeeeEecCcccceeEEEEeeCCCcEEEEeecC
Q 017194 89 MPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLD 168 (375)
Q Consensus 89 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d 168 (375)
..+ .-..+.+|.-.|.+++|+|...+|++++.|..|++||.++++++.++. +|...|..+.|.|+++ .|++++.|
T Consensus 211 ~~k---ee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~cl~tlh-~HKntVl~~~f~~n~N-~Llt~skD 285 (464)
T KOG0284|consen 211 MPK---EERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCLATLH-GHKNTVLAVKFNPNGN-WLLTGSKD 285 (464)
T ss_pred CCc---hhheeccCCCCcceeccCCccceeEEccCCceeEeecCCCcchhhhhh-hccceEEEEEEcCCCC-eeEEccCC
Confidence 543 334457889999999999999999999999999999999999999999 9999999999999997 79999999
Q ss_pred CeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCcceeecccc
Q 017194 169 SKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKS 248 (375)
Q Consensus 169 ~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~ 248 (375)
..++++|+++.+.+..++. |...+++++|+|. ...+|.+|+.||.|..|.+...+
T Consensus 286 ~~~kv~DiR~mkEl~~~r~-------------Hkkdv~~~~WhP~-----~~~lftsgg~Dgsvvh~~v~~~~------- 340 (464)
T KOG0284|consen 286 QSCKVFDIRTMKELFTYRG-------------HKKDVTSLTWHPL-----NESLFTSGGSDGSVVHWVVGLEE------- 340 (464)
T ss_pred ceEEEEehhHhHHHHHhhc-------------chhhheeeccccc-----cccceeeccCCCceEEEeccccc-------
Confidence 9999999998888888773 5789999999998 88999999999999999988321
Q ss_pred cCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEecCCCeEEEEeCCCc
Q 017194 249 TTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRF 325 (375)
Q Consensus 249 ~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd~~~~ 325 (375)
.....-.+|...|++++|+ |-|.+|++|+.|.++++|.-...
T Consensus 341 --------------------------------p~~~i~~AHd~~iwsl~~h---PlGhil~tgsnd~t~rfw~r~rp 382 (464)
T KOG0284|consen 341 --------------------------------PLGEIPPAHDGEIWSLAYH---PLGHILATGSNDRTVRFWTRNRP 382 (464)
T ss_pred --------------------------------cccCCCcccccceeeeecc---ccceeEeecCCCcceeeeccCCC
Confidence 1112345789999999999 89999999999999999976543
No 40
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=100.00 E-value=9.6e-40 Score=238.62 Aligned_cols=289 Identities=16% Similarity=0.189 Sum_probs=248.2
Q ss_pred CCCeeeecCCCceeEEEEecC--CCCEEEEeCCCCcEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEEcCCCeEE
Q 017194 6 AKPRRLRGHKATATCCIASRD--RPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVK 83 (375)
Q Consensus 6 ~~~~~l~~h~~~i~~~~~~~~--~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i~ 83 (375)
+...+-.||+.+|..++|+|- +|-+|++++.|+.-.+-+-++|.-+.++.+|.+.|++..++.+...-++++.|-+-+
T Consensus 5 ~~pl~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigtfeghkgavw~~~l~~na~~aasaaadftak 84 (334)
T KOG0278|consen 5 QTPLTCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGTFEGHKGAVWSATLNKNATRAASAAADFTAK 84 (334)
T ss_pred cCceEEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEeeeccCcceeeeecCchhhhhhhhcccchhh
Confidence 345667899999999999863 378999999999999999999999999999999999999998888888999999999
Q ss_pred EEECCCCCcccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCce-eeeeEecCcccceeEEEEeeCCCcEE
Q 017194 84 SFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHC-LYKSLRAGHSSICSSVQFIPWKPWEV 162 (375)
Q Consensus 84 iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~l 162 (375)
+||.-++..+..+. |..-|..++|+.|.++|++|+.+..++|||++..+ +...+. +|.+.|..+.|....+ .+
T Consensus 85 vw~a~tgdelhsf~----hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~-ghtg~Ir~v~wc~eD~-~i 158 (334)
T KOG0278|consen 85 VWDAVTGDELHSFE----HKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEIS-GHTGGIRTVLWCHEDK-CI 158 (334)
T ss_pred hhhhhhhhhhhhhh----hhheeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhc-CCCCcceeEEEeccCc-eE
Confidence 99998876555443 47789999999999999999999999999998654 466777 9999999999999887 78
Q ss_pred EEeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCcce
Q 017194 163 ISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELN 242 (375)
Q Consensus 163 ~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~ 242 (375)
++++.|++|++||.++++.++.+.+. .+|+++.+++ +|++|.++. .+.|.+||..+..
T Consensus 159 LSSadd~tVRLWD~rTgt~v~sL~~~--------------s~VtSlEvs~------dG~ilTia~-gssV~Fwdaksf~- 216 (334)
T KOG0278|consen 159 LSSADDKTVRLWDHRTGTEVQSLEFN--------------SPVTSLEVSQ------DGRILTIAY-GSSVKFWDAKSFG- 216 (334)
T ss_pred EeeccCCceEEEEeccCcEEEEEecC--------------CCCcceeecc------CCCEEEEec-CceeEEecccccc-
Confidence 88899999999999999999999865 7899999999 688777665 4689999999742
Q ss_pred eecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEecCCCeEEEEeC
Q 017194 243 ISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDC 322 (375)
Q Consensus 243 ~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd~ 322 (375)
+++.+. -...|.+...+ |+...+++|++|..++.||.
T Consensus 217 ---------------------------------------~lKs~k-~P~nV~SASL~---P~k~~fVaGged~~~~kfDy 253 (334)
T KOG0278|consen 217 ---------------------------------------LLKSYK-MPCNVESASLH---PKKEFFVAGGEDFKVYKFDY 253 (334)
T ss_pred ---------------------------------------ceeecc-Ccccccccccc---CCCceEEecCcceEEEEEec
Confidence 222222 23567888888 88899999999999999999
Q ss_pred CCceeeeecchhhhhhhhcccccceeeeeecCCCCCcEEEeeCCCeEEEEec
Q 017194 323 SRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSI 374 (375)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~iw~~ 374 (375)
.++.. +.....+|.++|.++.|+| +|+..++|+.||+|++|..
T Consensus 254 ~TgeE--------i~~~nkgh~gpVhcVrFSP-dGE~yAsGSEDGTirlWQt 296 (334)
T KOG0278|consen 254 NTGEE--------IGSYNKGHFGPVHCVRFSP-DGELYASGSEDGTIRLWQT 296 (334)
T ss_pred cCCce--------eeecccCCCCceEEEEECC-CCceeeccCCCceEEEEEe
Confidence 99953 2222489999999999999 9999999999999999985
No 41
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=2.8e-37 Score=258.21 Aligned_cols=329 Identities=14% Similarity=0.205 Sum_probs=273.1
Q ss_pred CCceeEEEEecCCCCEEEEeCCCCcEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEEcCC-CeEEEEECCCCCcc
Q 017194 15 KATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSG-KEVKSFDVHMPASW 93 (375)
Q Consensus 15 ~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d-~~i~iwd~~~~~~~ 93 (375)
...|+|.+|++. ...||+|-..|...+|.+....+++.+.....+|..++|+..|..|+.|+.. |++-||++++.
T Consensus 265 ~~kvtaa~fH~~-t~~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsE--- 340 (893)
T KOG0291|consen 265 SSKVTAAAFHKG-TNLLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSE--- 340 (893)
T ss_pred ccceeeeeccCC-ceEEEEEecCCeeEEEecCCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeecc---
Confidence 367999999998 8999999999999999999999999999888999999999999999998875 89999999864
Q ss_pred cccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCceeeeeEecCcccceeEEEEeeCCCcEEEEeecCCeEEE
Q 017194 94 RPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVM 173 (375)
Q Consensus 94 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~ 173 (375)
.-+-..++|...+++++++|||+++++|++||.|+|||..++-+..+|. .|++.|+.+.|+..++ .+++.+.||+|+.
T Consensus 341 sYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFt-eHts~Vt~v~f~~~g~-~llssSLDGtVRA 418 (893)
T KOG0291|consen 341 SYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFT-EHTSGVTAVQFTARGN-VLLSSSLDGTVRA 418 (893)
T ss_pred ceeeeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEec-cCCCceEEEEEEecCC-EEEEeecCCeEEe
Confidence 3334456788999999999999999999999999999999999999999 9999999999999998 8999999999999
Q ss_pred eeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCC-cEEEEeCCCcceeecccccCCC
Q 017194 174 WDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDG-VVDVINIESELNISRSKSTTKP 252 (375)
Q Consensus 174 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg-~i~i~d~~~~~~~~~~~~~~~~ 252 (375)
||+...+..+++..+ .+....+++..| .|.++++|+.|. .|.+|++.+++....+.. +..
T Consensus 419 wDlkRYrNfRTft~P------------~p~QfscvavD~------sGelV~AG~~d~F~IfvWS~qTGqllDiLsG-HEg 479 (893)
T KOG0291|consen 419 WDLKRYRNFRTFTSP------------EPIQFSCVAVDP------SGELVCAGAQDSFEIFVWSVQTGQLLDILSG-HEG 479 (893)
T ss_pred eeecccceeeeecCC------------CceeeeEEEEcC------CCCEEEeeccceEEEEEEEeecCeeeehhcC-CCC
Confidence 999999999999866 456678899988 799999999876 699999999987765554 467
Q ss_pred CCCceeecccccceee------eeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEecCCCeEEEEeCCCce
Q 017194 253 LKGSQSTSKVNIRDAE------MEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQ 326 (375)
Q Consensus 253 ~~~~~~~s~~g~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd~~~~~ 326 (375)
++.+++|+|+|..++. +..|+..... ..+.++ .+...+..++|+ |+|+.|+++.-||.|.+||.+.+.
T Consensus 480 PVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~--~~vEtl-~i~sdvl~vsfr---PdG~elaVaTldgqItf~d~~~~~ 553 (893)
T KOG0291|consen 480 PVSGLSFSPDGSLLASGSWDKTVRIWDIFSSS--GTVETL-EIRSDVLAVSFR---PDGKELAVATLDGQITFFDIKEAV 553 (893)
T ss_pred cceeeEEccccCeEEeccccceEEEEEeeccC--ceeeeE-eeccceeEEEEc---CCCCeEEEEEecceEEEEEhhhce
Confidence 8999999999998874 2222222211 111122 346679999999 999999999999999999999875
Q ss_pred eeeecch-----------hhhhhhhcccccceeeeeecCCCCCcEEEeeCCCeEEEEecC
Q 017194 327 GVQTSIN-----------NDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSIS 375 (375)
Q Consensus 327 ~~~~~~~-----------~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~iw~~~ 375 (375)
+...... ..............+.+++++ ||++|++|+....|++|++.
T Consensus 554 q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySa-DG~~IlAgG~sn~iCiY~v~ 612 (893)
T KOG0291|consen 554 QVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSA-DGKCILAGGESNSICIYDVP 612 (893)
T ss_pred eeccccchhhccccccccceeehhhcccCCceEEEEEcC-CCCEEEecCCcccEEEEECc
Confidence 5421110 111122233456789999999 99999999999999999874
No 42
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=4e-39 Score=247.26 Aligned_cols=253 Identities=17% Similarity=0.283 Sum_probs=231.9
Q ss_pred cCCCCCeeeecCCCceeEEEEecCCCCEEEEeCCCCcEEEEeccc-CceeeEeeecCccEEEEEEeCCCCeEEEEcCCCe
Q 017194 3 DAEAKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRS-KDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKE 81 (375)
Q Consensus 3 ~~~~~~~~l~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~-~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~ 81 (375)
.+++..+.|+||++.|..++|+.. |++||+++.|-.+++||.++ .++++.+.+|...|.+++|-|.|.++++++.|.+
T Consensus 138 ~tg~~e~~LrGHt~sv~di~~~a~-Gk~l~tcSsDl~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~t 216 (406)
T KOG0295|consen 138 ETGELERSLRGHTDSVFDISFDAS-GKYLATCSSDLSAKLWDFDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNT 216 (406)
T ss_pred cchhhhhhhhccccceeEEEEecC-ccEEEecCCccchhheeHHHHHHHHHHhcCcccceeeEEEEecCCeeeecccccc
Confidence 567778899999999999999998 89999999998899999987 5678888999999999999999999999999999
Q ss_pred EEEEECCCCCcccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCceeeeeEecCcccceeEEEEeeCC---
Q 017194 82 VKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWK--- 158 (375)
Q Consensus 82 i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~--- 158 (375)
|+.|++.++ ..+..+.+|...|..++.+.||..+++++.|.++++|-+.++++...++ .|+.+|.+++|.|..
T Consensus 217 ik~We~~tg---~cv~t~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR-~hEh~vEci~wap~~~~~ 292 (406)
T KOG0295|consen 217 IKAWECDTG---YCVKTFPGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAELR-EHEHPVECIAWAPESSYP 292 (406)
T ss_pred eeEEecccc---eeEEeccCchHhEEEEEecCCeeEEEecCCCceEEEEEeccchhhhhhh-ccccceEEEEecccccCc
Confidence 999999975 5566777889999999999999999999999999999999999999999 999999999997631
Q ss_pred -----------CcEEEEeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEe
Q 017194 159 -----------PWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAK 227 (375)
Q Consensus 159 -----------~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~ 227 (375)
..++.+++.|++|++||+.++.++.++. + |..+|..++|+| .|++|+++.
T Consensus 293 ~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~-g------------hdnwVr~~af~p------~Gkyi~Sca 353 (406)
T KOG0295|consen 293 SISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLV-G------------HDNWVRGVAFSP------GGKYILSCA 353 (406)
T ss_pred chhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEe-c------------ccceeeeeEEcC------CCeEEEEEe
Confidence 1279999999999999999999999998 3 589999999999 799999999
Q ss_pred cCCcEEEEeCCCcceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcE
Q 017194 228 GDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKY 307 (375)
Q Consensus 228 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~ 307 (375)
.|+++++||+++. +++..+..|..-+++++|. .+..+
T Consensus 354 DDktlrvwdl~~~----------------------------------------~cmk~~~ah~hfvt~lDfh---~~~p~ 390 (406)
T KOG0295|consen 354 DDKTLRVWDLKNL----------------------------------------QCMKTLEAHEHFVTSLDFH---KTAPY 390 (406)
T ss_pred cCCcEEEEEeccc----------------------------------------eeeeccCCCcceeEEEecC---CCCce
Confidence 9999999999974 6777888999999999998 77789
Q ss_pred EEEecCCCeEEEEeC
Q 017194 308 LISGGNDKLVKVWDC 322 (375)
Q Consensus 308 l~s~~~dg~i~iwd~ 322 (375)
+++|+-|..+++|..
T Consensus 391 VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 391 VVTGSVDQTVKVWEC 405 (406)
T ss_pred EEeccccceeeeeec
Confidence 999999999999974
No 43
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.2e-38 Score=270.96 Aligned_cols=302 Identities=17% Similarity=0.219 Sum_probs=250.4
Q ss_pred eeecCCCceeEEEEecCCCCEEEEeCCCCcEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEEcCCCeEEEEECCC
Q 017194 10 RLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHM 89 (375)
Q Consensus 10 ~l~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i~iwd~~~ 89 (375)
.|...+..|..++|+|. ..+++++-..|.|++||.+-+.++..+..|.++|..++|+|++..+++|+.|..|++|+.++
T Consensus 4 kfEskSsRvKglsFHP~-rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~ 82 (1202)
T KOG0292|consen 4 KFESKSSRVKGLSFHPK-RPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKT 82 (1202)
T ss_pred hhhcccccccceecCCC-CCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEeccc
Confidence 45556788999999999 89999999999999999999999999999999999999999999999999999999999986
Q ss_pred CCcccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCceeeeeEecCcccceeEEEEeeCCCcEEEEeecCC
Q 017194 90 PASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDS 169 (375)
Q Consensus 90 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~ 169 (375)
.+.+.++.+|-..|..+.|++.-.+|+++++|.+|+||+..+++++..+. +|...|.|.+|+|... ++++++-|.
T Consensus 83 ---rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavlt-GHnHYVMcAqFhptED-lIVSaSLDQ 157 (1202)
T KOG0292|consen 83 ---RRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLT-GHNHYVMCAQFHPTED-LIVSASLDQ 157 (1202)
T ss_pred ---ceehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEe-cCceEEEeeccCCccc-eEEEecccc
Confidence 45667778899999999999999999999999999999999999999999 9999999999999877 899999999
Q ss_pred eEEEeeCCCCCcceE----EecCC------CCCCCC------CCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEE
Q 017194 170 KLVMWDFSKGRPNKI----VNFGL------PENNGN------AGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVD 233 (375)
Q Consensus 170 ~i~~wd~~~~~~~~~----~~~~~------~~~~~~------~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~ 233 (375)
+|++||+..-+.... ++... .++-+. .-.-.|...|+-++|+| .-.++++|+.|..|+
T Consensus 158 TVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhp------TlpliVSG~DDRqVK 231 (1202)
T KOG0292|consen 158 TVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHP------TLPLIVSGADDRQVK 231 (1202)
T ss_pred eEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecC------CcceEEecCCcceee
Confidence 999999863211100 00000 000000 00112667889999999 689999999999999
Q ss_pred EEeCCCcceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEecC
Q 017194 234 VINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGN 313 (375)
Q Consensus 234 i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~ 313 (375)
+|.+... +.-.+.+..+|...|.++-|+ |...++++.|+
T Consensus 232 lWrmnet--------------------------------------KaWEvDtcrgH~nnVssvlfh---p~q~lIlSnsE 270 (1202)
T KOG0292|consen 232 LWRMNET--------------------------------------KAWEVDTCRGHYNNVSSVLFH---PHQDLILSNSE 270 (1202)
T ss_pred EEEeccc--------------------------------------cceeehhhhcccCCcceEEec---CccceeEecCC
Confidence 9999842 123345788999999999999 88899999999
Q ss_pred CCeEEEEeCCCceeeeecchhhhhhhhcccccceeeeeecCCCCCcEEEeeCCCeEEEEecC
Q 017194 314 DKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSIS 375 (375)
Q Consensus 314 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~iw~~~ 375 (375)
|++|+|||+... ..++.+....++-+.++.+| ..+++ .++.|+.+.++.++
T Consensus 271 DksirVwDm~kR---------t~v~tfrrendRFW~laahP-~lNLf-AAgHDsGm~VFkle 321 (1202)
T KOG0292|consen 271 DKSIRVWDMTKR---------TSVQTFRRENDRFWILAAHP-ELNLF-AAGHDSGMIVFKLE 321 (1202)
T ss_pred CccEEEEecccc---------cceeeeeccCCeEEEEEecC-Cccee-eeecCCceEEEEEc
Confidence 999999999998 55667777778889999999 76644 45566667777653
No 44
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=7.7e-39 Score=239.73 Aligned_cols=253 Identities=18% Similarity=0.231 Sum_probs=221.3
Q ss_pred eeeEeeecCccEEEEEEeCCCCeEEEEcCCCeEEEEECCCCCcccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEE
Q 017194 50 VQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKI 129 (375)
Q Consensus 50 ~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i 129 (375)
++..+.+|++.|+.+.|+|+|.+|++|+.|..|.+|+.... .+....+++|.+.|..+.|.+|++.|++++.|.+++.
T Consensus 39 p~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gd--ceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~ 116 (338)
T KOG0265|consen 39 PIMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGD--CENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRG 116 (338)
T ss_pred hhhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEecccc--ccceeeeccccceeEeeeeccCCCEEEEecCCceEEE
Confidence 35567889999999999999999999999999999997642 3555666799999999999999999999999999999
Q ss_pred EeCcCceeeeeEecCcccceeEEEEeeCCCcEEEEeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEe
Q 017194 130 IDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIA 209 (375)
Q Consensus 130 wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 209 (375)
||.++++.++.++ +|...|+++.-+.-|..++.+++.|+++++||+++..+++.++ .+..++++.
T Consensus 117 wD~~tG~~~rk~k-~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~--------------~kyqltAv~ 181 (338)
T KOG0265|consen 117 WDAETGKRIRKHK-GHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFE--------------NKYQLTAVG 181 (338)
T ss_pred Eecccceeeehhc-cccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccc--------------cceeEEEEE
Confidence 9999999999999 9999999999777777688899999999999999999988886 347899999
Q ss_pred ecCCccccCCCCEEEEEecCCcEEEEeCCCcceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCC
Q 017194 210 IPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGH 289 (375)
Q Consensus 210 ~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (375)
|.. .+..+.+|+-|+.|++||++.. ...+.+.+|
T Consensus 182 f~d------~s~qv~sggIdn~ikvWd~r~~----------------------------------------d~~~~lsGh 215 (338)
T KOG0265|consen 182 FKD------TSDQVISGGIDNDIKVWDLRKN----------------------------------------DGLYTLSGH 215 (338)
T ss_pred ecc------cccceeeccccCceeeeccccC----------------------------------------cceEEeecc
Confidence 998 6999999999999999999864 456789999
Q ss_pred CccEEEEEEeecCCCCcEEEEecCCCeEEEEeCCCceeeeecchhhhhhhhcccc----cceeeeeecCCCCCcEEEeeC
Q 017194 290 TAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLN----KKVNWLCTTPTESENLVVCDT 365 (375)
Q Consensus 290 ~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~----~~v~~~~~~~~~~~~l~s~~~ 365 (375)
..+|+.+..+ ++|.++.+-+.|.++++||++.....+ +++..+.+|. .....++|+| ++..+.+|+.
T Consensus 216 ~DtIt~lsls---~~gs~llsnsMd~tvrvwd~rp~~p~~-----R~v~if~g~~hnfeknlL~cswsp-~~~~i~ags~ 286 (338)
T KOG0265|consen 216 ADTITGLSLS---RYGSFLLSNSMDNTVRVWDVRPFAPSQ-----RCVKIFQGHIHNFEKNLLKCSWSP-NGTKITAGSA 286 (338)
T ss_pred cCceeeEEec---cCCCccccccccceEEEEEecccCCCC-----ceEEEeecchhhhhhhcceeeccC-CCCccccccc
Confidence 9999999999 999999999999999999998753221 3344555543 3456778999 9999999999
Q ss_pred CCeEEEEec
Q 017194 366 SKVVKVYSI 374 (375)
Q Consensus 366 dg~v~iw~~ 374 (375)
|..+++||.
T Consensus 287 dr~vyvwd~ 295 (338)
T KOG0265|consen 287 DRFVYVWDT 295 (338)
T ss_pred cceEEEeec
Confidence 999999985
No 45
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=1.5e-39 Score=249.64 Aligned_cols=287 Identities=20% Similarity=0.238 Sum_probs=244.6
Q ss_pred CCeeeecCCCceeEEEEecCCCCEEEEeCCCCcEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEEcCCCeEEEEE
Q 017194 7 KPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFD 86 (375)
Q Consensus 7 ~~~~l~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i~iwd 86 (375)
.+..|.||.+.|.|++=+|..-..+|+|+.||.|+|||+.+.++..+++.|.+.|..|++.. ..+++++.|++|+.|.
T Consensus 58 Fv~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk 135 (433)
T KOG0268|consen 58 FVGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWK 135 (433)
T ss_pred chhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecc--cceEEecCCcceeeee
Confidence 35678999999999999998447899999999999999999999999999999999999986 6789999999999999
Q ss_pred CCCCCcccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCceeeeeEecCcccceeEEEEeeCCCcEEEEee
Q 017194 87 VHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGG 166 (375)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~ 166 (375)
++. .++.++.+ ...+..+.-+..+..+++++. .|.|||.....+++.+. --...|.++.|+|-...+|++++
T Consensus 136 ~~~----~p~~tilg-~s~~~gIdh~~~~~~FaTcGe--~i~IWD~~R~~Pv~sms-wG~Dti~svkfNpvETsILas~~ 207 (433)
T KOG0268|consen 136 IDG----PPLHTILG-KSVYLGIDHHRKNSVFATCGE--QIDIWDEQRDNPVSSMS-WGADSISSVKFNPVETSILASCA 207 (433)
T ss_pred ccC----Ccceeeec-cccccccccccccccccccCc--eeeecccccCCccceee-cCCCceeEEecCCCcchheeeec
Confidence 884 24444443 566777777777778888875 59999999889999998 66778999999999887899999
Q ss_pred cCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCcceeecc
Q 017194 167 LDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRS 246 (375)
Q Consensus 167 ~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~ 246 (375)
+|+.|.+||++++.+++.+... -.-+.|+|+| +.-.+++|++|..++.||++...
T Consensus 208 sDrsIvLyD~R~~~Pl~KVi~~--------------mRTN~IswnP------eafnF~~a~ED~nlY~~DmR~l~----- 262 (433)
T KOG0268|consen 208 SDRSIVLYDLRQASPLKKVILT--------------MRTNTICWNP------EAFNFVAANEDHNLYTYDMRNLS----- 262 (433)
T ss_pred cCCceEEEecccCCccceeeee--------------ccccceecCc------cccceeeccccccceehhhhhhc-----
Confidence 9999999999999999988755 5668899999 68889999999999999999632
Q ss_pred cccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEecCCCeEEEEeCCCce
Q 017194 247 KSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQ 326 (375)
Q Consensus 247 ~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd~~~~~ 326 (375)
..+....+|...|.+++|| |.|+-+++||.|.+|+||.++.+.
T Consensus 263 ----------------------------------~p~~v~~dhvsAV~dVdfs---ptG~EfvsgsyDksIRIf~~~~~~ 305 (433)
T KOG0268|consen 263 ----------------------------------RPLNVHKDHVSAVMDVDFS---PTGQEFVSGSYDKSIRIFPVNHGH 305 (433)
T ss_pred ----------------------------------ccchhhcccceeEEEeccC---CCcchhccccccceEEEeecCCCc
Confidence 3455778999999999999 999999999999999999999874
Q ss_pred eeeecchhhhhhhhcccccceeeeeecCCCCCcEEEeeCCCeEEEEec
Q 017194 327 GVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSI 374 (375)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~iw~~ 374 (375)
.. .+ -...--..|.++.|+. |.+|+++||.|+.|++|.-
T Consensus 306 SR------di--YhtkRMq~V~~Vk~S~-Dskyi~SGSdd~nvRlWka 344 (433)
T KOG0268|consen 306 SR------DI--YHTKRMQHVFCVKYSM-DSKYIISGSDDGNVRLWKA 344 (433)
T ss_pred ch------hh--hhHhhhheeeEEEEec-cccEEEecCCCcceeeeec
Confidence 21 11 1112235689999999 9999999999999999963
No 46
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=6.5e-40 Score=250.63 Aligned_cols=253 Identities=18% Similarity=0.281 Sum_probs=222.1
Q ss_pred CCCeeeecCCCceeEEEEecCCCCEEEEeCCCCcEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEEcCCCeEEEE
Q 017194 6 AKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSF 85 (375)
Q Consensus 6 ~~~~~l~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i~iw 85 (375)
..++.|.||++.|.|+.|. .+.+++|+.|.+|++||+++++++.++-+|.+.|..+.|+. .++++++.|.++.+|
T Consensus 228 ~c~~~L~GHtGSVLCLqyd---~rviisGSSDsTvrvWDv~tge~l~tlihHceaVLhlrf~n--g~mvtcSkDrsiaVW 302 (499)
T KOG0281|consen 228 ECLKILTGHTGSVLCLQYD---ERVIVSGSSDSTVRVWDVNTGEPLNTLIHHCEAVLHLRFSN--GYMVTCSKDRSIAVW 302 (499)
T ss_pred HHHHhhhcCCCcEEeeecc---ceEEEecCCCceEEEEeccCCchhhHHhhhcceeEEEEEeC--CEEEEecCCceeEEE
Confidence 4567789999999999996 56999999999999999999999999999999999999984 589999999999999
Q ss_pred ECCCCCcccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCceeeeeEecCcccceeEEEEeeCCCcEEEEe
Q 017194 86 DVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISG 165 (375)
Q Consensus 86 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~ 165 (375)
|+...........+.+|...|+.+.|+ .+++++++.|.+|++|++.+++.++++. +|...|-|+.+. ++ ++++|
T Consensus 303 dm~sps~it~rrVLvGHrAaVNvVdfd--~kyIVsASgDRTikvW~~st~efvRtl~-gHkRGIAClQYr--~r-lvVSG 376 (499)
T KOG0281|consen 303 DMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSASGDRTIKVWSTSTCEFVRTLN-GHKRGIACLQYR--DR-LVVSG 376 (499)
T ss_pred eccCchHHHHHHHHhhhhhheeeeccc--cceEEEecCCceEEEEeccceeeehhhh-cccccceehhcc--Ce-EEEec
Confidence 999877666677788999999999985 4599999999999999999999999999 999999998875 44 89999
Q ss_pred ecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCcceeec
Q 017194 166 GLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISR 245 (375)
Q Consensus 166 ~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~ 245 (375)
+.|.+|++||+..|.++..++ + |..-|.++.| +.+.+++|..||+|++||+..+..+..
T Consensus 377 SSDntIRlwdi~~G~cLRvLe-G------------HEeLvRciRF--------d~krIVSGaYDGkikvWdl~aaldpra 435 (499)
T KOG0281|consen 377 SSDNTIRLWDIECGACLRVLE-G------------HEELVRCIRF--------DNKRIVSGAYDGKIKVWDLQAALDPRA 435 (499)
T ss_pred CCCceEEEEeccccHHHHHHh-c------------hHHhhhheee--------cCceeeeccccceEEEEecccccCCcc
Confidence 999999999999999999988 4 5788999999 688999999999999999997644322
Q ss_pred ccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEecCCCeEEEEeCCCc
Q 017194 246 SKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRF 325 (375)
Q Consensus 246 ~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd~~~~ 325 (375)
... .-++..+..|.+.|..+.|. ...+++++.|.+|.|||..++
T Consensus 436 ~~~-------------------------------~~Cl~~lv~hsgRVFrLQFD-----~fqIvsssHddtILiWdFl~~ 479 (499)
T KOG0281|consen 436 PAS-------------------------------TLCLRTLVEHSGRVFRLQFD-----EFQIISSSHDDTILIWDFLNG 479 (499)
T ss_pred ccc-------------------------------chHHHhhhhccceeEEEeec-----ceEEEeccCCCeEEEEEcCCC
Confidence 211 13556777899999999985 467889999999999999887
Q ss_pred e
Q 017194 326 Q 326 (375)
Q Consensus 326 ~ 326 (375)
.
T Consensus 480 ~ 480 (499)
T KOG0281|consen 480 P 480 (499)
T ss_pred C
Confidence 4
No 47
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=1.4e-38 Score=244.05 Aligned_cols=246 Identities=17% Similarity=0.254 Sum_probs=223.2
Q ss_pred eeEeeecCccEEEEEEeCCCCeEEEEcCCCeEEEEECCCCCcccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEE
Q 017194 51 QLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKII 130 (375)
Q Consensus 51 ~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw 130 (375)
.+.+.+|.+.|.++++.|.+..+++|+.|++|+|||+.+++ ...++.+|...|..+++++-..|+++++.|+.|+.|
T Consensus 144 ~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~---LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCw 220 (460)
T KOG0285|consen 144 YRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQ---LKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCW 220 (460)
T ss_pred hhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCe---EEEeecchhheeeeeeecccCceEEEecCCCeeEEE
Confidence 45678899999999999999999999999999999999864 445566788999999999999999999999999999
Q ss_pred eCcCceeeeeEecCcccceeEEEEeeCCCcEEEEeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEee
Q 017194 131 DIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAI 210 (375)
Q Consensus 131 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 210 (375)
|++..+.++.+. +|-+.|.+++.+|.-+ .|++|+.|.++++||+++...+..+. + |...|.++.+
T Consensus 221 DLe~nkvIR~Yh-GHlS~V~~L~lhPTld-vl~t~grDst~RvWDiRtr~~V~~l~-G------------H~~~V~~V~~ 285 (460)
T KOG0285|consen 221 DLEYNKVIRHYH-GHLSGVYCLDLHPTLD-VLVTGGRDSTIRVWDIRTRASVHVLS-G------------HTNPVASVMC 285 (460)
T ss_pred echhhhhHHHhc-cccceeEEEeccccce-eEEecCCcceEEEeeecccceEEEec-C------------CCCcceeEEe
Confidence 999999999999 9999999999999988 89999999999999999999888887 4 5789999999
Q ss_pred cCCccccCCCCEEEEEecCCcEEEEeCCCcceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCC
Q 017194 211 PDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHT 290 (375)
Q Consensus 211 ~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (375)
.| ....+++|+.|++|++||++.+ +....+..|.
T Consensus 286 ~~------~dpqvit~S~D~tvrlWDl~ag----------------------------------------kt~~tlt~hk 319 (460)
T KOG0285|consen 286 QP------TDPQVITGSHDSTVRLWDLRAG----------------------------------------KTMITLTHHK 319 (460)
T ss_pred ec------CCCceEEecCCceEEEeeeccC----------------------------------------ceeEeeeccc
Confidence 98 5778999999999999999975 3344788899
Q ss_pred ccEEEEEEeecCCCCcEEEEecCCCeEEEEeCCCceeeeecchhhhhhhhcccccceeeeeecCCCCCcEEEeeCCCeEE
Q 017194 291 AAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVK 370 (375)
Q Consensus 291 ~~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~ 370 (375)
..|.+++.+ |....+|+++.|+ |+-|++..+ ..+..+.+|..-|+.++... |+ ++++|++.|.+.
T Consensus 320 ksvral~lh---P~e~~fASas~dn-ik~w~~p~g---------~f~~nlsgh~~iintl~~ns-D~-v~~~G~dng~~~ 384 (460)
T KOG0285|consen 320 KSVRALCLH---PKENLFASASPDN-IKQWKLPEG---------EFLQNLSGHNAIINTLSVNS-DG-VLVSGGDNGSIM 384 (460)
T ss_pred ceeeEEecC---CchhhhhccCCcc-ceeccCCcc---------chhhccccccceeeeeeecc-Cc-eEEEcCCceEEE
Confidence 999999999 8888999999875 999999999 77888999999999999987 64 899999999999
Q ss_pred EEecC
Q 017194 371 VYSIS 375 (375)
Q Consensus 371 iw~~~ 375 (375)
+||.+
T Consensus 385 fwdwk 389 (460)
T KOG0285|consen 385 FWDWK 389 (460)
T ss_pred EEecC
Confidence 99963
No 48
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=3.3e-37 Score=257.67 Aligned_cols=283 Identities=18% Similarity=0.221 Sum_probs=249.2
Q ss_pred eeecCCCceeEEEEecCCCCEEEEeCCCCcEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEEcCCCeEEEEECCC
Q 017194 10 RLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHM 89 (375)
Q Consensus 10 ~l~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i~iwd~~~ 89 (375)
++.||...|.+++++.+ ...++||+. +.+++|+..+.++++++.. +.+.+..|-|.++++++|...|.+.+||+..
T Consensus 368 ~~~GHR~dVRsl~vS~d-~~~~~Sga~-~SikiWn~~t~kciRTi~~--~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS 443 (888)
T KOG0306|consen 368 EIGGHRSDVRSLCVSSD-SILLASGAG-ESIKIWNRDTLKCIRTITC--GYILASKFVPGDRYIVLGTKNGELQVFDLAS 443 (888)
T ss_pred eeccchhheeEEEeecC-ceeeeecCC-CcEEEEEccCcceeEEecc--ccEEEEEecCCCceEEEeccCCceEEEEeeh
Confidence 56799999999999998 666776654 6899999999999999974 4889999999999999999999999999986
Q ss_pred CCcccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcC-----ceee--------eeEecCcccceeEEEEee
Q 017194 90 PASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQ-----HCLY--------KSLRAGHSSICSSVQFIP 156 (375)
Q Consensus 90 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~-----~~~~--------~~~~~~~~~~v~~~~~~~ 156 (375)
. ..+...+.|.+.|.+++.+||++.+++|+.|.+|++||..- +... +++. -...|.++.++|
T Consensus 444 ~---~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLe--l~ddvL~v~~Sp 518 (888)
T KOG0306|consen 444 A---SLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLE--LEDDVLCVSVSP 518 (888)
T ss_pred h---hhhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEe--ccccEEEEEEcC
Confidence 4 44555567899999999999999999999999999999751 1111 2232 456899999999
Q ss_pred CCCcEEEEeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEe
Q 017194 157 WKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVIN 236 (375)
Q Consensus 157 ~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d 236 (375)
|++ +|+++--|.+|++|-+++.+..-.+. + |.-+|.++.++| |++++++|+.|..|++|-
T Consensus 519 dgk-~LaVsLLdnTVkVyflDtlKFflsLY-G------------HkLPV~smDIS~------DSklivTgSADKnVKiWG 578 (888)
T KOG0306|consen 519 DGK-LLAVSLLDNTVKVYFLDTLKFFLSLY-G------------HKLPVLSMDISP------DSKLIVTGSADKNVKIWG 578 (888)
T ss_pred CCc-EEEEEeccCeEEEEEecceeeeeeec-c------------cccceeEEeccC------CcCeEEeccCCCceEEec
Confidence 999 79999999999999999888766665 4 688999999999 899999999999999999
Q ss_pred CCCcceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEecCCCe
Q 017194 237 IESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKL 316 (375)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~dg~ 316 (375)
+.-+ .|-..+.+|...|.++.|. |+...+.++|.|+.
T Consensus 579 LdFG----------------------------------------DCHKS~fAHdDSvm~V~F~---P~~~~FFt~gKD~k 615 (888)
T KOG0306|consen 579 LDFG----------------------------------------DCHKSFFAHDDSVMSVQFL---PKTHLFFTCGKDGK 615 (888)
T ss_pred cccc----------------------------------------hhhhhhhcccCceeEEEEc---ccceeEEEecCcce
Confidence 8854 4556888999999999999 88999999999999
Q ss_pred EEEEeCCCceeeeecchhhhhhhhcccccceeeeeecCCCCCcEEEeeCCCeEEEEec
Q 017194 317 VKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSI 374 (375)
Q Consensus 317 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~iw~~ 374 (375)
|+-||-... +.++.+.+|...|++++.+| +|.++++++.|.+|++|.-
T Consensus 616 vKqWDg~kF---------e~iq~L~~H~~ev~cLav~~-~G~~vvs~shD~sIRlwE~ 663 (888)
T KOG0306|consen 616 VKQWDGEKF---------EEIQKLDGHHSEVWCLAVSP-NGSFVVSSSHDKSIRLWER 663 (888)
T ss_pred EEeechhhh---------hhheeeccchheeeeeEEcC-CCCeEEeccCCceeEeeec
Confidence 999999998 88889999999999999999 9999999999999999974
No 49
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=6.4e-37 Score=226.29 Aligned_cols=246 Identities=15% Similarity=0.252 Sum_probs=210.3
Q ss_pred cCCCceeEEEEecCCCCEEEEeCCCCcEEEEecccC--ceeeEeeecCccEEEEEEeCCCCeEEEEcCCCeEEEEECCCC
Q 017194 13 GHKATATCCIASRDRPGFVASSGEDGCICWFDLRSK--DVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMP 90 (375)
Q Consensus 13 ~h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~--~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i~iwd~~~~ 90 (375)
+|+..|++++|+|. |++||+|+-|.++.||.-..+ +++.++++|...|.+++|+++|++||+++.|+.|-||.+..+
T Consensus 59 ~hkrsVRsvAwsp~-g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~ded 137 (312)
T KOG0645|consen 59 GHKRSVRSVAWSPH-GRYLASASFDATVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDED 137 (312)
T ss_pred cchheeeeeeecCC-CcEEEEeeccceEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCC
Confidence 79999999999999 899999999999999987654 568899999999999999999999999999999999999988
Q ss_pred CcccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCc---CceeeeeEecCcccceeEEEEeeCCCcEEEEeec
Q 017194 91 ASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIR---QHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGL 167 (375)
Q Consensus 91 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~---~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~ 167 (375)
........++.|...|..+.|+|...+|++++.|.+|++|+-. .-.+++++. +|...|.+++|+|.|. .|++++.
T Consensus 138 dEfec~aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~-g~~~TVW~~~F~~~G~-rl~s~sd 215 (312)
T KOG0645|consen 138 DEFECIAVLQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLD-GHENTVWSLAFDNIGS-RLVSCSD 215 (312)
T ss_pred CcEEEEeeeccccccccEEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEec-CccceEEEEEecCCCc-eEEEecC
Confidence 8888999999999999999999999999999999999999876 236788999 9999999999999998 7999999
Q ss_pred CCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCcceeeccc
Q 017194 168 DSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSK 247 (375)
Q Consensus 168 d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 247 (375)
|++++||...+.- ... |...++.++|. ...+++++.|+.|++|.-....
T Consensus 216 D~tv~Iw~~~~~~-----~~~------------~sr~~Y~v~W~--------~~~IaS~ggD~~i~lf~~s~~~------ 264 (312)
T KOG0645|consen 216 DGTVSIWRLYTDL-----SGM------------HSRALYDVPWD--------NGVIASGGGDDAIRLFKESDSP------ 264 (312)
T ss_pred CcceEeeeeccCc-----chh------------cccceEeeeec--------ccceEeccCCCEEEEEEecCCC------
Confidence 9999999876221 111 45678888883 5689999999999999776420
Q ss_pred ccCCCCCCceeecccccceeeeeeeecCCcceeEee-eeecCCCccEEEEEEeecCC-CCcEEEEecCCCeEEEEeCC
Q 017194 248 STTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLD-YSVGGHTAAASCVAFSMFGE-RGKYLISGGNDKLVKVWDCS 323 (375)
Q Consensus 248 ~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~~s~~~~-~~~~l~s~~~dg~i~iwd~~ 323 (375)
++ ....++ ..-..|...|++++|. | -..+|++|+.||.|++|.+.
T Consensus 265 --------------d~--------------p~~~l~~~~~~aHe~dVNsV~w~---p~~~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 265 --------------DE--------------PSWNLLAKKEGAHEVDVNSVQWN---PKVSNRLASGGDDGIVNFWELE 311 (312)
T ss_pred --------------CC--------------chHHHHHhhhcccccccceEEEc---CCCCCceeecCCCceEEEEEec
Confidence 10 111112 2455788999999999 6 36799999999999999874
No 50
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=4.3e-37 Score=222.81 Aligned_cols=244 Identities=18% Similarity=0.251 Sum_probs=212.9
Q ss_pred eeEeeecCccEEEEEEeCCCCeEEEEcCCCeEEEEECCCCCcccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEE
Q 017194 51 QLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKII 130 (375)
Q Consensus 51 ~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw 130 (375)
...+..+.++|.++.|+-+|++.++++.|.+|++|+...+ ..++++.+|...|..++.+.|+..+++|+.|..+.+|
T Consensus 10 ~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg---~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vw 86 (307)
T KOG0316|consen 10 LSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRG---ALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVW 86 (307)
T ss_pred ceeecccccceEEEEEccCCCEEEEcCCCceEEeeccccc---ceeeeecCCCceeeeccccccccccccCCCCceEEEE
Confidence 5567789999999999999999999999999999998754 6677888899999999999999999999999999999
Q ss_pred eCcCceeeeeEecCcccceeEEEEeeCCCcEEEEeecCCeEEEeeCCCC--CcceEEecCCCCCCCCCCcccCCCceeEE
Q 017194 131 DIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKG--RPNKIVNFGLPENNGNAGQCYNPAFVHAI 208 (375)
Q Consensus 131 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 208 (375)
|+.+|+.++.|+ +|.+.|+.++|+.+.. .+++|+.|.++++||.++. ++++.+... ...|.++
T Consensus 87 DV~TGkv~Rr~r-gH~aqVNtV~fNeesS-Vv~SgsfD~s~r~wDCRS~s~ePiQildea-------------~D~V~Si 151 (307)
T KOG0316|consen 87 DVNTGKVDRRFR-GHLAQVNTVRFNEESS-VVASGSFDSSVRLWDCRSRSFEPIQILDEA-------------KDGVSSI 151 (307)
T ss_pred EcccCeeeeecc-cccceeeEEEecCcce-EEEeccccceeEEEEcccCCCCccchhhhh-------------cCceeEE
Confidence 999999999999 9999999999999988 8999999999999999864 455555432 4678889
Q ss_pred eecCCccccCCCCEEEEEecCCcEEEEeCCCcceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecC
Q 017194 209 AIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGG 288 (375)
Q Consensus 209 ~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (375)
.+ .+..+++|+.||+++.||++.+. +.....
T Consensus 152 ~v--------~~heIvaGS~DGtvRtydiR~G~----------------------------------------l~sDy~- 182 (307)
T KOG0316|consen 152 DV--------AEHEIVAGSVDGTVRTYDIRKGT----------------------------------------LSSDYF- 182 (307)
T ss_pred Ee--------cccEEEeeccCCcEEEEEeecce----------------------------------------eehhhc-
Confidence 88 47899999999999999999752 222222
Q ss_pred CCccEEEEEEeecCCCCcEEEEecCCCeEEEEeCCCceeeeecchhhhhhhhcccccceee--eeecCCCCCcEEEeeCC
Q 017194 289 HTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNW--LCTTPTESENLVVCDTS 366 (375)
Q Consensus 289 ~~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~--~~~~~~~~~~l~s~~~d 366 (375)
..+|+++.|+ +|++..++++.|+++++.|-.++ ++++.+.+|...-.. .+++. ....+++|++|
T Consensus 183 -g~pit~vs~s---~d~nc~La~~l~stlrLlDk~tG---------klL~sYkGhkn~eykldc~l~q-sdthV~sgSED 248 (307)
T KOG0316|consen 183 -GHPITSVSFS---KDGNCSLASSLDSTLRLLDKETG---------KLLKSYKGHKNMEYKLDCCLNQ-SDTHVFSGSED 248 (307)
T ss_pred -CCcceeEEec---CCCCEEEEeeccceeeecccchh---------HHHHHhcccccceeeeeeeecc-cceeEEeccCC
Confidence 4689999999 99999999999999999999999 999999999875443 45555 55689999999
Q ss_pred CeEEEEecC
Q 017194 367 KVVKVYSIS 375 (375)
Q Consensus 367 g~v~iw~~~ 375 (375)
|.|++||+.
T Consensus 249 G~Vy~wdLv 257 (307)
T KOG0316|consen 249 GKVYFWDLV 257 (307)
T ss_pred ceEEEEEec
Confidence 999999973
No 51
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=100.00 E-value=2.7e-37 Score=232.82 Aligned_cols=300 Identities=17% Similarity=0.269 Sum_probs=239.9
Q ss_pred CCeeeecCCCceeEEEEecCCCCEEEEeCCCCcEEEEeccc------------C------ceeeEeeecCccEEEEEEeC
Q 017194 7 KPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRS------------K------DVQLVTDVGNGPVTSLCFKS 68 (375)
Q Consensus 7 ~~~~l~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~------------~------~~~~~~~~~~~~v~~l~~~~ 68 (375)
+...+..|++++.+.+|+|| |.++|+|+.|..|+|.|++. + -.++++-.|.++|+++.|+|
T Consensus 104 Et~ylt~HK~~cR~aafs~D-G~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHP 182 (430)
T KOG0640|consen 104 ETKYLTSHKSPCRAAAFSPD-GSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHP 182 (430)
T ss_pred ceEEEeecccceeeeeeCCC-CcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecc
Confidence 34567889999999999999 99999999999999999871 1 12667777999999999999
Q ss_pred CCCeEEEEcCCCeEEEEECCCCCcccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCceeeeeEe--cCcc
Q 017194 69 GNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLR--AGHS 146 (375)
Q Consensus 69 ~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~--~~~~ 146 (375)
....|++++.|++|+++|+......+..+.+.. ..+|.++.|+|.|.+|++|..-.++++||+.+-++...-. .+|.
T Consensus 183 re~ILiS~srD~tvKlFDfsK~saKrA~K~~qd-~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht 261 (430)
T KOG0640|consen 183 RETILISGSRDNTVKLFDFSKTSAKRAFKVFQD-TEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHT 261 (430)
T ss_pred hhheEEeccCCCeEEEEecccHHHHHHHHHhhc-cceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCcccccc
Confidence 999999999999999999986544445555543 5789999999999999999999999999999877643322 2789
Q ss_pred cceeEEEEeeCCCcEEEEeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEE
Q 017194 147 SICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVA 226 (375)
Q Consensus 147 ~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~ 226 (375)
+.|+++.+++.++ +.++++.||.|++||--+++++.++...+ ....|.+..|.. +++++++.
T Consensus 262 ~ai~~V~Ys~t~~-lYvTaSkDG~IklwDGVS~rCv~t~~~AH-----------~gsevcSa~Ftk------n~kyiLsS 323 (430)
T KOG0640|consen 262 GAITQVRYSSTGS-LYVTASKDGAIKLWDGVSNRCVRTIGNAH-----------GGSEVCSAVFTK------NGKYILSS 323 (430)
T ss_pred cceeEEEecCCcc-EEEEeccCCcEEeeccccHHHHHHHHhhc-----------CCceeeeEEEcc------CCeEEeec
Confidence 9999999999998 89999999999999999999999887441 246789999988 89999999
Q ss_pred ecCCcEEEEeCCCcceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCc
Q 017194 227 KGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGK 306 (375)
Q Consensus 227 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~ 306 (375)
+.|..+++|.+.+++......... ..+....-+...|. ....
T Consensus 324 G~DS~vkLWEi~t~R~l~~YtGAg-----------------------------------~tgrq~~rtqAvFN---htEd 365 (430)
T KOG0640|consen 324 GKDSTVKLWEISTGRMLKEYTGAG-----------------------------------TTGRQKHRTQAVFN---HTED 365 (430)
T ss_pred CCcceeeeeeecCCceEEEEecCC-----------------------------------cccchhhhhhhhhc---Cccc
Confidence 999999999999875443221110 00111111223344 4555
Q ss_pred EEEEecC-CCeEEEEeCCCceeeeecchhhhhhhhcccccceeeeeecCCCCCcEEEeeCCCeEEEEe
Q 017194 307 YLISGGN-DKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYS 373 (375)
Q Consensus 307 ~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~iw~ 373 (375)
|++.-.+ .+.+.-||.++.. +......+|.+.+.++.-+| .+.-+++|+.|-++|+|-
T Consensus 366 yVl~pDEas~slcsWdaRtad--------r~~l~slgHn~a~R~i~HSP-~~p~FmTcsdD~raRFWy 424 (430)
T KOG0640|consen 366 YVLFPDEASNSLCSWDARTAD--------RVALLSLGHNGAVRWIVHSP-VEPAFMTCSDDFRARFWY 424 (430)
T ss_pred eEEccccccCceeeccccchh--------hhhhcccCCCCCceEEEeCC-CCCceeeecccceeeeee
Confidence 6665543 5779999999984 44445678999999999999 777899999999999995
No 52
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4.6e-37 Score=251.86 Aligned_cols=249 Identities=18% Similarity=0.301 Sum_probs=221.6
Q ss_pred eEeeecCccEEEEEEeCCCCeEEEEcCCCeEEEEECCCCCcccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEe
Q 017194 52 LVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIID 131 (375)
Q Consensus 52 ~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd 131 (375)
+.+..+...|.++.|+|....++++-..|.+.|||.++....+.+.. ...+|.+..|-+..+++++|++|..|++|+
T Consensus 7 rk~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV---~~~PvRa~kfiaRknWiv~GsDD~~IrVfn 83 (794)
T KOG0276|consen 7 RKFQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEV---SEVPVRAAKFIARKNWIVTGSDDMQIRVFN 83 (794)
T ss_pred hHhhccCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeee---cccchhhheeeeccceEEEecCCceEEEEe
Confidence 34555889999999999999999999999999999998655554444 478999999999999999999999999999
Q ss_pred CcCceeeeeEecCcccceeEEEEeeCCCcEEEEeecCCeEEEeeCCCC-CcceEEecCCCCCCCCCCcccCCCceeEEee
Q 017194 132 IRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKG-RPNKIVNFGLPENNGNAGQCYNPAFVHAIAI 210 (375)
Q Consensus 132 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 210 (375)
..+++.+..|. .|...|++++.+|..+ ++++++.|-.|++||.+.+ .+.++++ + |...|.+++|
T Consensus 84 ynt~ekV~~Fe-AH~DyIR~iavHPt~P-~vLtsSDDm~iKlW~we~~wa~~qtfe-G------------H~HyVMqv~f 148 (794)
T KOG0276|consen 84 YNTGEKVKTFE-AHSDYIRSIAVHPTLP-YVLTSSDDMTIKLWDWENEWACEQTFE-G------------HEHYVMQVAF 148 (794)
T ss_pred cccceeeEEee-ccccceeeeeecCCCC-eEEecCCccEEEEeeccCceeeeeEEc-C------------cceEEEEEEe
Confidence 99999999999 9999999999999999 7999999999999999865 4445555 4 6889999999
Q ss_pred cCCccccCCCCEEEEEecCCcEEEEeCCCcceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCC
Q 017194 211 PDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHT 290 (375)
Q Consensus 211 ~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (375)
.|. |.+.+++++-|++|++|.+... .+..++.+|.
T Consensus 149 nPk-----D~ntFaS~sLDrTVKVWslgs~----------------------------------------~~nfTl~gHe 183 (794)
T KOG0276|consen 149 NPK-----DPNTFASASLDRTVKVWSLGSP----------------------------------------HPNFTLEGHE 183 (794)
T ss_pred cCC-----CccceeeeeccccEEEEEcCCC----------------------------------------CCceeeeccc
Confidence 997 8999999999999999999864 3455888999
Q ss_pred ccEEEEEEeecCCCCcEEEEecCCCeEEEEeCCCceeeeecchhhhhhhhcccccceeeeeecCCCCCcEEEeeCCCeEE
Q 017194 291 AAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVK 370 (375)
Q Consensus 291 ~~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~ 370 (375)
..|+++.+-+- +|..||++|++|.+|+|||.++. .+++++.||...|..++|+| .-..++||++||+|+
T Consensus 184 kGVN~Vdyy~~-gdkpylIsgaDD~tiKvWDyQtk---------~CV~TLeGHt~Nvs~v~fhp-~lpiiisgsEDGTvr 252 (794)
T KOG0276|consen 184 KGVNCVDYYTG-GDKPYLISGADDLTIKVWDYQTK---------SCVQTLEGHTNNVSFVFFHP-ELPIIISGSEDGTVR 252 (794)
T ss_pred cCcceEEeccC-CCcceEEecCCCceEEEeecchH---------HHHHHhhcccccceEEEecC-CCcEEEEecCCccEE
Confidence 99999999732 34569999999999999999998 89999999999999999999 667999999999999
Q ss_pred EEec
Q 017194 371 VYSI 374 (375)
Q Consensus 371 iw~~ 374 (375)
||+-
T Consensus 253 iWhs 256 (794)
T KOG0276|consen 253 IWNS 256 (794)
T ss_pred EecC
Confidence 9973
No 53
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=2.5e-36 Score=259.64 Aligned_cols=246 Identities=21% Similarity=0.295 Sum_probs=213.2
Q ss_pred cCccEEEEEEeCCCCeEEEEcCCCeEEEEECCCCCcccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeC-cCc
Q 017194 57 GNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDI-RQH 135 (375)
Q Consensus 57 ~~~~v~~l~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~-~~~ 135 (375)
+...|.++.|+++|+.+++++.++.+++|+....+. .....+.+|...|.+++|+|+++++++++.|++|++||+ ..+
T Consensus 158 ~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~-~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~ 236 (456)
T KOG0266|consen 158 ECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKS-NLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDG 236 (456)
T ss_pred ccCceEEEEEcCCCCeEEEccCCCcEEEeecccccc-hhhccccccccceeeeEECCCCcEEEEecCCceEEEeeccCCC
Confidence 378899999999999999999999999999965542 345555788999999999999999999999999999999 556
Q ss_pred eeeeeEecCcccceeEEEEeeCCCcEEEEeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCcc
Q 017194 136 CLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADM 215 (375)
Q Consensus 136 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 215 (375)
..+++++ +|...|++++|+|+++ ++++|+.|++|++||++++++...+.. |...|.+++|++
T Consensus 237 ~~~~~l~-gH~~~v~~~~f~p~g~-~i~Sgs~D~tvriWd~~~~~~~~~l~~-------------hs~~is~~~f~~--- 298 (456)
T KOG0266|consen 237 RNLKTLK-GHSTYVTSVAFSPDGN-LLVSGSDDGTVRIWDVRTGECVRKLKG-------------HSDGISGLAFSP--- 298 (456)
T ss_pred eEEEEec-CCCCceEEEEecCCCC-EEEEecCCCcEEEEeccCCeEEEeeec-------------cCCceEEEEECC---
Confidence 8899999 9999999999999996 899999999999999999999999985 478999999999
Q ss_pred ccCCCCEEEEEecCCcEEEEeCCCcceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCc--cE
Q 017194 216 LDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTA--AA 293 (375)
Q Consensus 216 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~v 293 (375)
++++|++++.|+.|++||+.++... +...+.++.. ++
T Consensus 299 ---d~~~l~s~s~d~~i~vwd~~~~~~~--------------------------------------~~~~~~~~~~~~~~ 337 (456)
T KOG0266|consen 299 ---DGNLLVSASYDGTIRVWDLETGSKL--------------------------------------CLKLLSGAENSAPV 337 (456)
T ss_pred ---CCCEEEEcCCCccEEEEECCCCcee--------------------------------------eeecccCCCCCCce
Confidence 8999999999999999999985311 2334444444 59
Q ss_pred EEEEEeecCCCCcEEEEecCCCeEEEEeCCCceeeeecchhhhhhhhcccccce---eeeeecCCCCCcEEEeeCCCeEE
Q 017194 294 SCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKV---NWLCTTPTESENLVVCDTSKVVK 370 (375)
Q Consensus 294 ~~~~~s~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v---~~~~~~~~~~~~l~s~~~dg~v~ 370 (375)
+.+.|+ |++++++++..|+.+++||+... ..+....+|...+ .+...++ .++++++++.|+.|+
T Consensus 338 ~~~~fs---p~~~~ll~~~~d~~~~~w~l~~~---------~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~sg~~d~~v~ 404 (456)
T KOG0266|consen 338 TSVQFS---PNGKYLLSASLDRTLKLWDLRSG---------KSVGTYTGHSNLVRCIFSPTLST-GGKLIYSGSEDGSVY 404 (456)
T ss_pred eEEEEC---CCCcEEEEecCCCeEEEEEccCC---------cceeeecccCCcceeEecccccC-CCCeEEEEeCCceEE
Confidence 999999 99999999999999999999998 6667777777643 3334455 899999999999999
Q ss_pred EEecC
Q 017194 371 VYSIS 375 (375)
Q Consensus 371 iw~~~ 375 (375)
+|+++
T Consensus 405 ~~~~~ 409 (456)
T KOG0266|consen 405 VWDSS 409 (456)
T ss_pred EEeCC
Confidence 99974
No 54
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=100.00 E-value=5.5e-38 Score=244.83 Aligned_cols=288 Identities=18% Similarity=0.252 Sum_probs=243.1
Q ss_pred CeeeecCCCceeEEEEecCCCCEEEEeCCCCcEEEEecccCc--eeeEeeecCccEEEEEEeCCCCeEEEEcCCCeEEEE
Q 017194 8 PRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKD--VQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSF 85 (375)
Q Consensus 8 ~~~l~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~--~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i~iw 85 (375)
...+..|.+.+..+.|-++ ...|++|+.|..|++|+...++ .+.++.+..++|+++.|.++++++++++.|+.+++|
T Consensus 168 ~~~ld~h~gev~~v~~l~~-sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~W 246 (459)
T KOG0288|consen 168 LFVLDAHEGEVHDVEFLRN-SDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLW 246 (459)
T ss_pred hhhhhccccccceeEEccC-cchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCceeee
Confidence 4557789999999999998 7899999999999999987666 577888888999999999999999999999999999
Q ss_pred ECCCCCcccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCceeeeeEecCcccceeEEEEeeCCCcEEEEe
Q 017194 86 DVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISG 165 (375)
Q Consensus 86 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~ 165 (375)
++.. .+...++.+|...|+++.|......+++|+.|.+|+.||+....+.+++. ....+.+|...+. .+++|
T Consensus 247 nvd~---~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l--~~S~cnDI~~~~~---~~~Sg 318 (459)
T KOG0288|consen 247 NVDS---LRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVL--PGSQCNDIVCSIS---DVISG 318 (459)
T ss_pred eccc---hhhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhheecccc--ccccccceEecce---eeeec
Confidence 9985 46667788899999999999887779999999999999999988877765 4566777877633 68999
Q ss_pred ecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCcceeec
Q 017194 166 GLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISR 245 (375)
Q Consensus 166 ~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~ 245 (375)
-.|++|++||.++..+...+..+ +.|+++..++ ++..+.+.+.|..+.++|+++......
T Consensus 319 H~DkkvRfwD~Rs~~~~~sv~~g--------------g~vtSl~ls~------~g~~lLsssRDdtl~viDlRt~eI~~~ 378 (459)
T KOG0288|consen 319 HFDKKVRFWDIRSADKTRSVPLG--------------GRVTSLDLSM------DGLELLSSSRDDTLKVIDLRTKEIRQT 378 (459)
T ss_pred ccccceEEEeccCCceeeEeecC--------------cceeeEeecc------CCeEEeeecCCCceeeeecccccEEEE
Confidence 99999999999999999999866 7999999999 799999999999999999998533221
Q ss_pred ccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEecCCCeEEEEeCCCc
Q 017194 246 SKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRF 325 (375)
Q Consensus 246 ~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd~~~~ 325 (375)
.... | -.. ....+.+.|| |++.|+++||.||.|+||++.++
T Consensus 379 ~sA~-------------g---------------------~k~--asDwtrvvfS---pd~~YvaAGS~dgsv~iW~v~tg 419 (459)
T KOG0288|consen 379 FSAE-------------G---------------------FKC--ASDWTRVVFS---PDGSYVAAGSADGSVYIWSVFTG 419 (459)
T ss_pred eecc-------------c---------------------ccc--ccccceeEEC---CCCceeeeccCCCcEEEEEccCc
Confidence 1111 0 111 2348889999 99999999999999999999999
Q ss_pred eeeeecchhhhhhhhcccc--cceeeeeecCCCCCcEEEeeCCCeEEEEe
Q 017194 326 QGVQTSINNDLLIKNINLN--KKVNWLCTTPTESENLVVCDTSKVVKVYS 373 (375)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~~l~s~~~dg~v~iw~ 373 (375)
+. ...+.... ..|++++|+| .|..|++++.++.+.+|.
T Consensus 420 Kl---------E~~l~~s~s~~aI~s~~W~~-sG~~Llsadk~~~v~lW~ 459 (459)
T KOG0288|consen 420 KL---------EKVLSLSTSNAAITSLSWNP-SGSGLLSADKQKAVTLWT 459 (459)
T ss_pred eE---------EEEeccCCCCcceEEEEEcC-CCchhhcccCCcceEecC
Confidence 54 33333322 2699999999 999999999999999994
No 55
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=100.00 E-value=3.8e-36 Score=221.07 Aligned_cols=286 Identities=15% Similarity=0.211 Sum_probs=242.1
Q ss_pred eeeecCCCceeEEEEecCCCCEEEEeCCCCcEEEEecccCceeeE--eeecCccEEEEEEeC-CCCeEEEEcCCCeEEEE
Q 017194 9 RRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLV--TDVGNGPVTSLCFKS-GNEDIIYVSSGKEVKSF 85 (375)
Q Consensus 9 ~~l~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~--~~~~~~~v~~l~~~~-~~~~l~~~~~d~~i~iw 85 (375)
+.+++|...|.+++|+.+ |..|++|+.|+++.+|+++....... ..+|.+.|..++|+| +...+++++.|.+|++|
T Consensus 14 r~~~~~~~~v~Sv~wn~~-g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~w 92 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCD-GTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIW 92 (313)
T ss_pred HHhhhhhhcceEEEEccc-CceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEE
Confidence 567899999999999999 89999999999999999987765444 457899999999987 45689999999999999
Q ss_pred ECCCCCcccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCceeeeeEecCcccceeEEEEeeCCCcEEEEe
Q 017194 86 DVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISG 165 (375)
Q Consensus 86 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~ 165 (375)
|++.+++...+.. .+.-.-+.|+|+|.++++++.|..|.+.|.++.+.....+ ....+..++|+.++. +|+..
T Consensus 93 d~r~~k~~~~i~~----~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~--~~~e~ne~~w~~~nd-~Fflt 165 (313)
T KOG1407|consen 93 DIRSGKCTARIET----KGENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQ--FKFEVNEISWNNSND-LFFLT 165 (313)
T ss_pred EeccCcEEEEeec----cCcceEEEEcCCCCEEEEecCcccEEEEEecccceeehhc--ccceeeeeeecCCCC-EEEEe
Confidence 9998877666655 3445568899999999999999999999999888877776 667889999997776 67766
Q ss_pred ecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCcceeec
Q 017194 166 GLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISR 245 (375)
Q Consensus 166 ~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~ 245 (375)
...|+|.|.....-+++..++. |+....+|.|+| +|+++|+|+.|-.+.+||+..
T Consensus 166 ~GlG~v~ILsypsLkpv~si~A-------------H~snCicI~f~p------~GryfA~GsADAlvSLWD~~E------ 220 (313)
T KOG1407|consen 166 NGLGCVEILSYPSLKPVQSIKA-------------HPSNCICIEFDP------DGRYFATGSADALVSLWDVDE------ 220 (313)
T ss_pred cCCceEEEEecccccccccccc-------------CCcceEEEEECC------CCceEeeccccceeeccChhH------
Confidence 7779999999999999999885 478889999999 899999999999999999985
Q ss_pred ccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEecCCCeEEEEeCCCc
Q 017194 246 SKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRF 325 (375)
Q Consensus 246 ~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd~~~~ 325 (375)
+-++..+..+.-+|+.+.|| .||++||+|++|..|-|=+++++
T Consensus 221 ----------------------------------LiC~R~isRldwpVRTlSFS---~dg~~lASaSEDh~IDIA~vetG 263 (313)
T KOG1407|consen 221 ----------------------------------LICERCISRLDWPVRTLSFS---HDGRMLASASEDHFIDIAEVETG 263 (313)
T ss_pred ----------------------------------hhhheeeccccCceEEEEec---cCcceeeccCccceEEeEecccC
Confidence 24566777888999999999 99999999999999999999998
Q ss_pred eeeeecchhhhhhhhcccccceeeeeecCCCCCcEEEeeCC---------CeEEEEecC
Q 017194 326 QGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTS---------KVVKVYSIS 375 (375)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d---------g~v~iw~~~ 375 (375)
... ....+.++-..++|+| ...+||-++.| |.|+++-++
T Consensus 264 d~~----------~eI~~~~~t~tVAWHP-k~~LLAyA~ddk~~d~~reag~vKiFG~~ 311 (313)
T KOG1407|consen 264 DRV----------WEIPCEGPTFTVAWHP-KRPLLAYACDDKDGDSNREAGTVKIFGLS 311 (313)
T ss_pred CeE----------EEeeccCCceeEEecC-CCceeeEEecCCCCccccccceeEEecCC
Confidence 532 3346778899999999 66677766543 678887653
No 56
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.3e-36 Score=257.62 Aligned_cols=297 Identities=16% Similarity=0.184 Sum_probs=216.3
Q ss_pred eeee-cCCCceeEEEEecCCCCEEEEeCCCCcEEEEecccCceeeEee-ec----------CccEEEEEEeC---CCCe-
Q 017194 9 RRLR-GHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTD-VG----------NGPVTSLCFKS---GNED- 72 (375)
Q Consensus 9 ~~l~-~h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~-~~----------~~~v~~l~~~~---~~~~- 72 (375)
+.++ +|++.|+++.|++| |+|||+||.|+.|+||.+...+. ..+. .. ...+..+.-++ .++.
T Consensus 260 Qe~~~ah~gaIw~mKFS~D-GKyLAsaGeD~virVWkVie~e~-~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s 337 (712)
T KOG0283|consen 260 QEISNAHKGAIWAMKFSHD-GKYLASAGEDGVIRVWKVIESER-MRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTS 337 (712)
T ss_pred eccccccCCcEEEEEeCCC-CceeeecCCCceEEEEEEeccch-hcccccccchhhhhhhhccccCcccccccccccccc
Confidence 4456 89999999999999 99999999999999999876332 1110 00 00011111111 0010
Q ss_pred -EEEEcCCCeEEEEECCCCCcccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCceeeeeEecCcccceeE
Q 017194 73 -IIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSS 151 (375)
Q Consensus 73 -l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~ 151 (375)
.-.+.....+.+-+..-.-..+++..+.+|.+.|.++.|+.++ +|++++.|.+|++|++...+++..|. |...|+|
T Consensus 338 ~~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~-fLLSSSMDKTVRLWh~~~~~CL~~F~--HndfVTc 414 (712)
T KOG0283|consen 338 SSRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNN-FLLSSSMDKTVRLWHPGRKECLKVFS--HNDFVTC 414 (712)
T ss_pred ccccccCCccccCCCccccccccchhhhhccchhheecccccCC-eeEeccccccEEeecCCCcceeeEEe--cCCeeEE
Confidence 1111111222111111111246788899999999999999765 99999999999999999999999998 9999999
Q ss_pred EEEeeCCCcEEEEeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCc
Q 017194 152 VQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGV 231 (375)
Q Consensus 152 ~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~ 231 (375)
++|+|-+..+|++|+-||.|+||++...+...-..+. .-|++++|.| +|+..++|+.+|.
T Consensus 415 VaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~--------------~lITAvcy~P------dGk~avIGt~~G~ 474 (712)
T KOG0283|consen 415 VAFNPVDDRYFISGSLDGKVRLWSISDKKVVDWNDLR--------------DLITAVCYSP------DGKGAVIGTFNGY 474 (712)
T ss_pred EEecccCCCcEeecccccceEEeecCcCeeEeehhhh--------------hhheeEEecc------CCceEEEEEeccE
Confidence 9999988778999999999999999987766655533 7899999999 8999999999999
Q ss_pred EEEEeCCCcceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEe
Q 017194 232 VDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISG 311 (375)
Q Consensus 232 i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~ 311 (375)
+++|+....+......... +.-+.. .|. .|+.+.|.|-.++ .+++.
T Consensus 475 C~fY~t~~lk~~~~~~I~~------------------------------~~~Kk~-~~~-rITG~Q~~p~~~~--~vLVT 520 (712)
T KOG0283|consen 475 CRFYDTEGLKLVSDFHIRL------------------------------HNKKKK-QGK-RITGLQFFPGDPD--EVLVT 520 (712)
T ss_pred EEEEEccCCeEEEeeeEee------------------------------ccCccc-cCc-eeeeeEecCCCCC--eEEEe
Confidence 9999999754332211000 000011 223 8999999853333 57777
Q ss_pred cCCCeEEEEeCCCceeeeecchhhhhhhhccccc--ceeeeeecCCCCCcEEEeeCCCeEEEEec
Q 017194 312 GNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNK--KVNWLCTTPTESENLVVCDTSKVVKVYSI 374 (375)
Q Consensus 312 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~~l~s~~~dg~v~iw~~ 374 (375)
+.|..|+|+|.++. .++..+.++.. .-....|+. ||++|+++++|..|++|++
T Consensus 521 SnDSrIRI~d~~~~---------~lv~KfKG~~n~~SQ~~Asfs~-Dgk~IVs~seDs~VYiW~~ 575 (712)
T KOG0283|consen 521 SNDSRIRIYDGRDK---------DLVHKFKGFRNTSSQISASFSS-DGKHIVSASEDSWVYIWKN 575 (712)
T ss_pred cCCCceEEEeccch---------hhhhhhcccccCCcceeeeEcc-CCCEEEEeecCceEEEEeC
Confidence 88999999999887 67777776543 335567888 9999999999999999996
No 57
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=100.00 E-value=1.5e-37 Score=227.25 Aligned_cols=254 Identities=18% Similarity=0.218 Sum_probs=228.0
Q ss_pred cCCCCCeeeecCCCceeEEEEecCCCCEEEEeCCCCcEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEEcCCCeE
Q 017194 3 DAEAKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEV 82 (375)
Q Consensus 3 ~~~~~~~~l~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i 82 (375)
+|+.=+.+|.||++.|++...+.+ ....|+++.|-+-++||.-+|..+..+. |..-|.+++|+.|.++|++|+.++-+
T Consensus 47 ~tgdwigtfeghkgavw~~~l~~n-a~~aasaaadftakvw~a~tgdelhsf~-hkhivk~~af~~ds~~lltgg~ekll 124 (334)
T KOG0278|consen 47 DTGDWIGTFEGHKGAVWSATLNKN-ATRAASAAADFTAKVWDAVTGDELHSFE-HKHIVKAVAFSQDSNYLLTGGQEKLL 124 (334)
T ss_pred CCCCcEEeeeccCcceeeeecCch-hhhhhhhcccchhhhhhhhhhhhhhhhh-hhheeeeEEecccchhhhccchHHHh
Confidence 466678899999999999999887 7889999999999999999999998887 88999999999999999999999999
Q ss_pred EEEECCCCCcccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCceeeeeEecCcccceeEEEEeeCCCcEE
Q 017194 83 KSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEV 162 (375)
Q Consensus 83 ~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l 162 (375)
+|||++.. ..+...+.+|.+.|..+.|....+.|++...|++|++||.++++.++++. ...+|+++.++++|. +
T Consensus 125 rvfdln~p--~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~--~~s~VtSlEvs~dG~--i 198 (334)
T KOG0278|consen 125 RVFDLNRP--KAPPKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLE--FNSPVTSLEVSQDGR--I 198 (334)
T ss_pred hhhhccCC--CCCchhhcCCCCcceeEEEeccCceEEeeccCCceEEEEeccCcEEEEEe--cCCCCcceeeccCCC--E
Confidence 99999854 35677888999999999999999999999999999999999999999998 678999999999996 6
Q ss_pred EEeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCcce
Q 017194 163 ISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELN 242 (375)
Q Consensus 163 ~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~ 242 (375)
++-...+.|.+||..+-..++.++.+ ..|.+..++| +...+++|+.|..++.||..++..
T Consensus 199 lTia~gssV~Fwdaksf~~lKs~k~P--------------~nV~SASL~P------~k~~fVaGged~~~~kfDy~TgeE 258 (334)
T KOG0278|consen 199 LTIAYGSSVKFWDAKSFGLLKSYKMP--------------CNVESASLHP------KKEFFVAGGEDFKVYKFDYNTGEE 258 (334)
T ss_pred EEEecCceeEEeccccccceeeccCc--------------cccccccccC------CCceEEecCcceEEEEEeccCCce
Confidence 77777889999999999999998854 7899999999 689999999999999999998643
Q ss_pred eecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEecCCCeEEEEeC
Q 017194 243 ISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDC 322 (375)
Q Consensus 243 ~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd~ 322 (375)
+ .. -.++|.++|.++.|+ |+|...++|++||+|++|..
T Consensus 259 i-------------------------------------~~--~nkgh~gpVhcVrFS---PdGE~yAsGSEDGTirlWQt 296 (334)
T KOG0278|consen 259 I-------------------------------------GS--YNKGHFGPVHCVRFS---PDGELYASGSEDGTIRLWQT 296 (334)
T ss_pred e-------------------------------------ee--cccCCCCceEEEEEC---CCCceeeccCCCceEEEEEe
Confidence 2 11 147899999999999 99999999999999999998
Q ss_pred CCce
Q 017194 323 SRFQ 326 (375)
Q Consensus 323 ~~~~ 326 (375)
..++
T Consensus 297 ~~~~ 300 (334)
T KOG0278|consen 297 TPGK 300 (334)
T ss_pred cCCC
Confidence 8764
No 58
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.3e-36 Score=258.62 Aligned_cols=276 Identities=16% Similarity=0.267 Sum_probs=230.7
Q ss_pred eeecCccEEEEEEeCCCCeEEEEcCCCeEEEEECCCCCcccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCc
Q 017194 54 TDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIR 133 (375)
Q Consensus 54 ~~~~~~~v~~l~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~ 133 (375)
++..+..|..++|+|....++++-..|.|++||.+.+ ..+..+..|.++|..++|+|++.++++|++|-.|++|+.+
T Consensus 5 fEskSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~---tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk 81 (1202)
T KOG0292|consen 5 FESKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMG---TLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYK 81 (1202)
T ss_pred hhcccccccceecCCCCCEEEEeecCceeeeehhhhh---hHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecc
Confidence 4445678999999999999999999999999999854 5667778899999999999999999999999999999999
Q ss_pred CceeeeeEecCcccceeEEEEeeCCCcEEEEeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCC
Q 017194 134 QHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDA 213 (375)
Q Consensus 134 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 213 (375)
+.+++.++. +|-+.|+.+.|++.-++ +++++.|.+|+||+..+.+++..+. + |...|.|..|+|
T Consensus 82 ~rrclftL~-GHlDYVRt~~FHheyPW-IlSASDDQTIrIWNwqsr~~iavlt-G------------HnHYVMcAqFhp- 145 (1202)
T KOG0292|consen 82 TRRCLFTLL-GHLDYVRTVFFHHEYPW-ILSASDDQTIRIWNWQSRKCIAVLT-G------------HNHYVMCAQFHP- 145 (1202)
T ss_pred cceehhhhc-cccceeEEeeccCCCce-EEEccCCCeEEEEeccCCceEEEEe-c------------CceEEEeeccCC-
Confidence 999999999 99999999999999995 9999999999999999999999987 4 678999999999
Q ss_pred ccccCCCCEEEEEecCCcEEEEeCCCcceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccE
Q 017194 214 DMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAA 293 (375)
Q Consensus 214 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 293 (375)
...++++++-|.+|++||+..-+............ ..+.+ +..+..........+.+.||...|
T Consensus 146 -----tEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~-------~~~~~----~~~dLfg~~DaVVK~VLEGHDRGV 209 (1202)
T KOG0292|consen 146 -----TEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQ-------MRGQQ----GNSDLFGQTDAVVKHVLEGHDRGV 209 (1202)
T ss_pred -----ccceEEEecccceEEEEeecchhccCCCCCCchhh-------hhccc----cchhhcCCcCeeeeeeeccccccc
Confidence 79999999999999999998644332222100000 00100 000111122334556889999999
Q ss_pred EEEEEeecCCCCcEEEEecCCCeEEEEeCCCceeeeecchhhhhhhhcccccceeeeeecCCCCCcEEEeeCCCeEEEEe
Q 017194 294 SCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYS 373 (375)
Q Consensus 294 ~~~~~s~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~iw~ 373 (375)
+-++|+ |.-.++++|++|+.|++|.+...+. ..+.+..+|.+.|.++.|+| ..+.++|.|+|++|+|||
T Consensus 210 NwaAfh---pTlpliVSG~DDRqVKlWrmnetKa-------WEvDtcrgH~nnVssvlfhp-~q~lIlSnsEDksirVwD 278 (1202)
T KOG0292|consen 210 NWAAFH---PTLPLIVSGADDRQVKLWRMNETKA-------WEVDTCRGHYNNVSSVLFHP-HQDLILSNSEDKSIRVWD 278 (1202)
T ss_pred ceEEec---CCcceEEecCCcceeeEEEeccccc-------eeehhhhcccCCcceEEecC-ccceeEecCCCccEEEEe
Confidence 999999 8888999999999999999987643 44567789999999999999 778999999999999999
Q ss_pred cC
Q 017194 374 IS 375 (375)
Q Consensus 374 ~~ 375 (375)
++
T Consensus 279 m~ 280 (1202)
T KOG0292|consen 279 MT 280 (1202)
T ss_pred cc
Confidence 84
No 59
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.4e-35 Score=236.22 Aligned_cols=278 Identities=18% Similarity=0.260 Sum_probs=234.9
Q ss_pred CCceeEEEEecCCCCEEEEeCCCCcEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEEcCCCeEEEEECCCCCccc
Q 017194 15 KATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWR 94 (375)
Q Consensus 15 ~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~ 94 (375)
.++|.+++|+|....-+|+.+.- .+.||+..+....+++.--...|.++.|..||++|++|...|.|+++|.++ ..
T Consensus 26 ~~~vssl~fsp~~P~d~aVt~S~-rvqly~~~~~~~~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~---r~ 101 (487)
T KOG0310|consen 26 HNSVSSLCFSPKHPYDFAVTSSV-RVQLYSSVTRSVRKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKS---RV 101 (487)
T ss_pred cCcceeEecCCCCCCceEEeccc-EEEEEecchhhhhhhHHhhccceeEEEeecCCeEEEccCCcCcEEEecccc---HH
Confidence 46899999999745446655543 699999998888887777788999999999999999999999999999653 35
Q ss_pred ccccccCCCcceeEEEEcCCC-CeEEEEeCCCcEEEEeCcCceeeeeEecCcccceeEEEEeeCCCcEEEEeecCCeEEE
Q 017194 95 PLESYNYNKEEINQIVCNPKS-SFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVM 173 (375)
Q Consensus 95 ~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~ 173 (375)
.+..+..|+.++..+.|+|++ ..+++|++|+.+++||+.+......+. +|++.|++.+|+|..+.++++|+.||.|++
T Consensus 102 iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~-~htDYVR~g~~~~~~~hivvtGsYDg~vrl 180 (487)
T KOG0310|consen 102 ILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELS-GHTDYVRCGDISPANDHIVVTGSYDGKVRL 180 (487)
T ss_pred HHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEec-CCcceeEeeccccCCCeEEEecCCCceEEE
Confidence 667788899999999999965 567788899999999999888766788 999999999999988778999999999999
Q ss_pred eeCCCC-CcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCcceeecccccCCC
Q 017194 174 WDFSKG-RPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKP 252 (375)
Q Consensus 174 wd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~ 252 (375)
||++.. ..+.++. |..+|..+.+-| .|.++++++.. .+++||+.++.
T Consensus 181 ~DtR~~~~~v~eln--------------hg~pVe~vl~lp------sgs~iasAgGn-~vkVWDl~~G~----------- 228 (487)
T KOG0310|consen 181 WDTRSLTSRVVELN--------------HGCPVESVLALP------SGSLIASAGGN-SVKVWDLTTGG----------- 228 (487)
T ss_pred EEeccCCceeEEec--------------CCCceeeEEEcC------CCCEEEEcCCC-eEEEEEecCCc-----------
Confidence 999987 4455554 668999999999 68999888765 89999999652
Q ss_pred CCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEecCCCeEEEEeCCCceeeeecc
Q 017194 253 LKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSI 332 (375)
Q Consensus 253 ~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 332 (375)
+.+..+..|...|+|+.+. .++..|++|+-|+.+++||+.+.+
T Consensus 229 ----------------------------qll~~~~~H~KtVTcL~l~---s~~~rLlS~sLD~~VKVfd~t~~K------ 271 (487)
T KOG0310|consen 229 ----------------------------QLLTSMFNHNKTVTCLRLA---SDSTRLLSGSLDRHVKVFDTTNYK------ 271 (487)
T ss_pred ----------------------------eehhhhhcccceEEEEEee---cCCceEeecccccceEEEEccceE------
Confidence 3344555699999999999 899999999999999999988863
Q ss_pred hhhhhhhhcccccceeeeeecCCCCCcEEEeeCCCeEEE
Q 017194 333 NNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKV 371 (375)
Q Consensus 333 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~i 371 (375)
+.......++|.+++.+| +++.++.|..||.+.+
T Consensus 272 ----vv~s~~~~~pvLsiavs~-dd~t~viGmsnGlv~~ 305 (487)
T KOG0310|consen 272 ----VVHSWKYPGPVLSIAVSP-DDQTVVIGMSNGLVSI 305 (487)
T ss_pred ----EEEeeecccceeeEEecC-CCceEEEecccceeee
Confidence 224446789999999999 8899999999998754
No 60
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=100.00 E-value=2.2e-35 Score=256.75 Aligned_cols=297 Identities=18% Similarity=0.235 Sum_probs=241.7
Q ss_pred CCCceeEEEEecCCCCEEEEeC--CCCcEEEEeccc------------CceeeEeeecCccEEEEEEeCCCCeEEEEcCC
Q 017194 14 HKATATCCIASRDRPGFVASSG--EDGCICWFDLRS------------KDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSG 79 (375)
Q Consensus 14 h~~~i~~~~~~~~~~~~l~s~~--~d~~i~iw~~~~------------~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d 79 (375)
++..|.+++.+|+ +..+|||+ .|+.++||+.+. .+.+.+...|.+.|+|+.|+|||++||+|+.|
T Consensus 12 ~~~~IfSIdv~pd-g~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD 90 (942)
T KOG0973|consen 12 NEKSIFSIDVHPD-GVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDD 90 (942)
T ss_pred CCeeEEEEEecCC-ceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCc
Confidence 4566899999999 89999999 899999999652 12355667799999999999999999999999
Q ss_pred CeEEEEECCC---------------CCcccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCceeeeeEecC
Q 017194 80 KEVKSFDVHM---------------PASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAG 144 (375)
Q Consensus 80 ~~i~iwd~~~---------------~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 144 (375)
+.|.||+... -+.++.+..+.+|...|..++|+|++.++++++.|++|.+||..+.+.+..++ +
T Consensus 91 ~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl~-~ 169 (942)
T KOG0973|consen 91 RLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLKVLR-G 169 (942)
T ss_pred ceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccccceeeeeee-c
Confidence 9999999872 01244566778899999999999999999999999999999999999999999 9
Q ss_pred cccceeEEEEeeCCCcEEEEeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEE
Q 017194 145 HSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICV 224 (375)
Q Consensus 145 ~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~ 224 (375)
|.+.|..+.|.|-|+ +|++-+.|++|++|++.+....+.+.-+. ..+........+.|+| ||.+|+
T Consensus 170 H~s~VKGvs~DP~Gk-y~ASqsdDrtikvwrt~dw~i~k~It~pf-------~~~~~~T~f~RlSWSP------DG~~la 235 (942)
T KOG0973|consen 170 HQSLVKGVSWDPIGK-YFASQSDDRTLKVWRTSDWGIEKSITKPF-------EESPLTTFFLRLSWSP------DGHHLA 235 (942)
T ss_pred ccccccceEECCccC-eeeeecCCceEEEEEcccceeeEeeccch-------hhCCCcceeeecccCC------CcCeec
Confidence 999999999999999 79999999999999987766666654221 1111245678899999 899999
Q ss_pred EEecC----CcEEEEeCCCcceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEee
Q 017194 225 VAKGD----GVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSM 300 (375)
Q Consensus 225 ~~~~d----g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 300 (375)
+...- ..+.|.+-.+ +..-..+-||..++.+++|+|
T Consensus 236 s~nA~n~~~~~~~IieR~t----------------------------------------Wk~~~~LvGH~~p~evvrFnP 275 (942)
T KOG0973|consen 236 SPNAVNGGKSTIAIIERGT----------------------------------------WKVDKDLVGHSAPVEVVRFNP 275 (942)
T ss_pred chhhccCCcceeEEEecCC----------------------------------------ceeeeeeecCCCceEEEEeCh
Confidence 87532 2344444432 355568889999999999996
Q ss_pred c---CCCC-----------cEEEEecCCCeEEEEeCCCceeeeecchhhhhhhhcccccceeeeeecCCCCCcEEEeeCC
Q 017194 301 F---GERG-----------KYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTS 366 (375)
Q Consensus 301 ~---~~~~-----------~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d 366 (375)
. .+.. ..+|+|+.|++|.||.....+ +++....-....|.+++|+| ||-.|+.+|.|
T Consensus 276 ~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~R--------Pl~vi~~lf~~SI~DmsWsp-dG~~LfacS~D 346 (942)
T KOG0973|consen 276 KLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPR--------PLFVIHNLFNKSIVDMSWSP-DGFSLFACSLD 346 (942)
T ss_pred HHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCC--------chhhhhhhhcCceeeeeEcC-CCCeEEEEecC
Confidence 2 1111 167899999999999998774 44444455678999999999 99999999999
Q ss_pred CeEEEEecC
Q 017194 367 KVVKVYSIS 375 (375)
Q Consensus 367 g~v~iw~~~ 375 (375)
|+|.+..|+
T Consensus 347 GtV~~i~Fe 355 (942)
T KOG0973|consen 347 GTVALIHFE 355 (942)
T ss_pred CeEEEEEcc
Confidence 999998875
No 61
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.2e-34 Score=216.28 Aligned_cols=291 Identities=14% Similarity=0.158 Sum_probs=235.1
Q ss_pred CCCCCeeeecCCCceeEEEEecCCCCEEEEeCCCCcEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEEcC--CCe
Q 017194 4 AEAKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSS--GKE 81 (375)
Q Consensus 4 ~~~~~~~l~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~--d~~ 81 (375)
.++..+.|+...+.|+++.|+++ |..+++++.|.+++|||..+++..+++..+.-.+..++|......++.++. |.+
T Consensus 3 s~~~ak~f~~~~~~i~sl~fs~~-G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~t 81 (311)
T KOG1446|consen 3 SFRPAKVFRETNGKINSLDFSDD-GLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDT 81 (311)
T ss_pred ccccccccccCCCceeEEEecCC-CCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCc
Confidence 34566777778899999999999 899999999999999999999999999988889999999887777887777 789
Q ss_pred EEEEECCCCCcccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCceeeeeEecCcccceeEEEEeeCCCcE
Q 017194 82 VKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWE 161 (375)
Q Consensus 82 i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 161 (375)
|+..++.+. +.++-+.+|...|++++.+|-+..+++++.|++|++||++..++...+. . ..-..++|.|+|- +
T Consensus 82 IryLsl~dN---kylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~-~--~~~pi~AfDp~GL-i 154 (311)
T KOG1446|consen 82 IRYLSLHDN---KYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLN-L--SGRPIAAFDPEGL-I 154 (311)
T ss_pred eEEEEeecC---ceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEe-c--CCCcceeECCCCc-E
Confidence 999999864 5667788999999999999999999999999999999999887766665 2 2334578999997 6
Q ss_pred EEEeecCCeEEEeeCCCC--CcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCC
Q 017194 162 VISGGLDSKLVMWDFSKG--RPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIES 239 (375)
Q Consensus 162 l~~~~~d~~i~~wd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 239 (375)
+|++.....|++||++.- .+...+....+ .....+.|.|+| +|+.++.++..+.+++.|.-+
T Consensus 155 fA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~----------~~~ew~~l~FS~------dGK~iLlsT~~s~~~~lDAf~ 218 (311)
T KOG1446|consen 155 FALANGSELIKLYDLRSFDKGPFTTFSITDN----------DEAEWTDLEFSP------DGKSILLSTNASFIYLLDAFD 218 (311)
T ss_pred EEEecCCCeEEEEEecccCCCCceeEccCCC----------CccceeeeEEcC------CCCEEEEEeCCCcEEEEEccC
Confidence 777777779999999964 45555554311 245678999999 899999999999999999988
Q ss_pred cceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCc---cEEEEEEeecCCCCcEEEEecCCCe
Q 017194 240 ELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTA---AASCVAFSMFGERGKYLISGGNDKL 316 (375)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~v~~~~~s~~~~~~~~l~s~~~dg~ 316 (375)
+..+. ++..+.. --....|+ ||++++++|+.||+
T Consensus 219 G~~~~----------------------------------------tfs~~~~~~~~~~~a~ft---Pds~Fvl~gs~dg~ 255 (311)
T KOG1446|consen 219 GTVKS----------------------------------------TFSGYPNAGNLPLSATFT---PDSKFVLSGSDDGT 255 (311)
T ss_pred CcEee----------------------------------------eEeeccCCCCcceeEEEC---CCCcEEEEecCCCc
Confidence 64332 2222211 11456788 99999999999999
Q ss_pred EEEEeCCCceeeeecchhhhhhhhcc-cccceeeeeecCCCCCcEEEeeCCCeEEEEe
Q 017194 317 VKVWDCSRFQGVQTSINNDLLIKNIN-LNKKVNWLCTTPTESENLVVCDTSKVVKVYS 373 (375)
Q Consensus 317 i~iwd~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~s~~~dg~v~iw~ 373 (375)
|.+|+++++ +.+..+.+ +.+++.++.|+| . +..-++.+..+.+|=
T Consensus 256 i~vw~~~tg---------~~v~~~~~~~~~~~~~~~fnP-~--~~mf~sa~s~l~fw~ 301 (311)
T KOG1446|consen 256 IHVWNLETG---------KKVAVLRGPNGGPVSCVRFNP-R--YAMFVSASSNLVFWL 301 (311)
T ss_pred EEEEEcCCC---------cEeeEecCCCCCCccccccCC-c--eeeeeecCceEEEEe
Confidence 999999999 44555555 788999999988 3 455555566788883
No 62
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=5.6e-35 Score=224.70 Aligned_cols=301 Identities=12% Similarity=0.099 Sum_probs=249.3
Q ss_pred CCCCCeeeecCCCceeEEEEecCCCCEEEEeCCCCcEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEEcCCCeEE
Q 017194 4 AEAKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVK 83 (375)
Q Consensus 4 ~~~~~~~l~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i~ 83 (375)
++..+..+.+|++.|+|+.|+.+ +.+||||+.+|.|+||+..++.....+...-..+.=+.|+|.+..|++|+.||.+.
T Consensus 95 ~ge~~~eltgHKDSVt~~~Fshd-gtlLATGdmsG~v~v~~~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvW 173 (399)
T KOG0296|consen 95 TGEFAGELTGHKDSVTCCSFSHD-GTLLATGDMSGKVLVFKVSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVW 173 (399)
T ss_pred CCcceeEecCCCCceEEEEEccC-ceEEEecCCCccEEEEEcccCceEEEeecccCceEEEEecccccEEEeecCCCcEE
Confidence 45677889999999999999999 89999999999999999999998888876677888899999999999999999999
Q ss_pred EEECCCCCcccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCceeeeeEecCcccceeEEEEeeCCCcEEE
Q 017194 84 SFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVI 163 (375)
Q Consensus 84 iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~ 163 (375)
+|.+.++ ...+.+.+|..++++=.|.|+|+.++++..||+|++||+.+++++..+......+..++.++..+. .++
T Consensus 174 mw~ip~~---~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~-~~~ 249 (399)
T KOG0296|consen 174 MWQIPSQ---ALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGS-TLT 249 (399)
T ss_pred EEECCCc---ceeeEecCCCCCcccccccCCCceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccc-eeE
Confidence 9999864 455667789999999999999999999999999999999999998888733345677888888887 799
Q ss_pred EeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCccee
Q 017194 164 SGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNI 243 (375)
Q Consensus 164 ~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~ 243 (375)
.|+.++.+++-+..+++.+.......|.. ...+...+.++.+.|. +..=.+.|+|+-||+|.|||+...+.+
T Consensus 250 ~g~~e~~~~~~~~~sgKVv~~~n~~~~~l-----~~~~e~~~esve~~~~---ss~lpL~A~G~vdG~i~iyD~a~~~~R 321 (399)
T KOG0296|consen 250 KGNSEGVACGVNNGSGKVVNCNNGTVPEL-----KPSQEELDESVESIPS---SSKLPLAACGSVDGTIAIYDLAASTLR 321 (399)
T ss_pred eccCCccEEEEccccceEEEecCCCCccc-----cccchhhhhhhhhccc---ccccchhhcccccceEEEEecccchhh
Confidence 99999999999988888776655211111 1113344555655553 125678899999999999999875544
Q ss_pred ecccccCCCCCCceeecccccceee---eeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEecCCCeEEEE
Q 017194 244 SRSKSTTKPLKGSQSTSKVNIRDAE---MEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVW 320 (375)
Q Consensus 244 ~~~~~~~~~~~~~~~~s~~g~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iw 320 (375)
... +....+..+.|-+ ..++++ .|....++.+..+++..+.+|...|.+++++ |+.++++|+|.|++.+||
T Consensus 322 ~~c--~he~~V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~ls---~~~~~vvT~s~D~~a~VF 395 (399)
T KOG0296|consen 322 HIC--EHEDGVTKLKWLN-TDYLLTACANGKVRQWDARTGQLKFTYTGHQMGILDFALS---PQKRLVVTVSDDNTALVF 395 (399)
T ss_pred eec--cCCCceEEEEEcC-cchheeeccCceEEeeeccccceEEEEecCchheeEEEEc---CCCcEEEEecCCCeEEEE
Confidence 433 3345577888888 455544 5778888899999999999999999999999 999999999999999999
Q ss_pred eCC
Q 017194 321 DCS 323 (375)
Q Consensus 321 d~~ 323 (375)
+..
T Consensus 396 ~v~ 398 (399)
T KOG0296|consen 396 EVP 398 (399)
T ss_pred ecC
Confidence 875
No 63
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=9.2e-36 Score=218.26 Aligned_cols=246 Identities=20% Similarity=0.243 Sum_probs=209.1
Q ss_pred CCCceeEEEEecCCCCEEEEeCCCCcEEEEeccc-CceeeEeeecCccEEEEEEeCC-CCeEEEEcCCCeEEEEECCCCC
Q 017194 14 HKATATCCIASRDRPGFVASSGEDGCICWFDLRS-KDVQLVTDVGNGPVTSLCFKSG-NEDIIYVSSGKEVKSFDVHMPA 91 (375)
Q Consensus 14 h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~-~~~~~~~~~~~~~v~~l~~~~~-~~~l~~~~~d~~i~iwd~~~~~ 91 (375)
-.+.+..++|++...+.+++++.||+++|||+.. ..++..++.|...|.++.|++- ++.+++++.|++|++|+..-
T Consensus 59 ~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r-- 136 (311)
T KOG0277|consen 59 TEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNR-- 136 (311)
T ss_pred cccceeEeeecCCCcceEEEEecCceEEEeccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCC--
Confidence 3577999999999888999999999999999643 3468889999999999999974 55678889999999999874
Q ss_pred cccccccccCCCcceeEEEEcC-CCCeEEEEeCCCcEEEEeCcCceeeeeEecCcccceeEEEEeeCCCcEEEEeecCCe
Q 017194 92 SWRPLESYNYNKEEINQIVCNP-KSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSK 170 (375)
Q Consensus 92 ~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~ 170 (375)
...+.++.+|...|....|+| ..+.+++++.|+++++||++..-....+. .|..++.++.|+....+++++|+.|+.
T Consensus 137 -~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~-ah~~Eil~cdw~ky~~~vl~Tg~vd~~ 214 (311)
T KOG0277|consen 137 -PNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIE-AHNSEILCCDWSKYNHNVLATGGVDNL 214 (311)
T ss_pred -CcceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEE-eccceeEeecccccCCcEEEecCCCce
Confidence 466777889999999999999 57889999999999999998543333477 899999999999988889999999999
Q ss_pred EEEeeCCCCC-cceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCcceeeccccc
Q 017194 171 LVMWDFSKGR-PNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKST 249 (375)
Q Consensus 171 i~~wd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~ 249 (375)
|+.||+++-+ ++.++. + |...|..+.|+|. ...+|++++.|=+++|||...+.
T Consensus 215 vr~wDir~~r~pl~eL~-g------------h~~AVRkvk~Sph-----~~~lLaSasYDmT~riw~~~~~d-------- 268 (311)
T KOG0277|consen 215 VRGWDIRNLRTPLFELN-G------------HGLAVRKVKFSPH-----HASLLASASYDMTVRIWDPERQD-------- 268 (311)
T ss_pred EEEEehhhccccceeec-C------------CceEEEEEecCcc-----hhhHhhhccccceEEecccccch--------
Confidence 9999999754 444553 4 6789999999996 67899999999999999998531
Q ss_pred CCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEecCCCeEEEEeC
Q 017194 250 TKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDC 322 (375)
Q Consensus 250 ~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd~ 322 (375)
.++.+..-|..-+..+.||++ +..++|+++.|+.++||+.
T Consensus 269 -------------------------------s~~e~~~~HtEFv~g~Dws~~--~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 269 -------------------------------SAIETVDHHTEFVCGLDWSLF--DPGQVASTGWDELLYVWNP 308 (311)
T ss_pred -------------------------------hhhhhhhccceEEeccccccc--cCceeeecccccceeeecc
Confidence 233466678999999999974 6679999999999999984
No 64
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.3e-34 Score=239.15 Aligned_cols=272 Identities=19% Similarity=0.275 Sum_probs=229.5
Q ss_pred EEEecCCCCEEEEeCCCCcEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEEcCCCeEEEEECCCCCccccccccc
Q 017194 21 CIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYN 100 (375)
Q Consensus 21 ~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~ 100 (375)
++|+. .+.||.|.. ..|.+|+..+++.......+...|+++.|+++|.+|++|..+|.|.|||..+. +.+..+.
T Consensus 183 ldWss--~n~laValg-~~vylW~~~s~~v~~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~---k~~~~~~ 256 (484)
T KOG0305|consen 183 LDWSS--ANVLAVALG-QSVYLWSASSGSVTELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQ---KKTRTLR 256 (484)
T ss_pred hhccc--CCeEEEEec-ceEEEEecCCCceEEeEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhc---ccccccc
Confidence 57774 357777764 47999999999876666666899999999999999999999999999999864 4444455
Q ss_pred C-CCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCceeeee-EecCcccceeEEEEeeCCCcEEEEeecCCeEEEeeCCC
Q 017194 101 Y-NKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKS-LRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSK 178 (375)
Q Consensus 101 ~-~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~ 178 (375)
+ |...|-+++|. +..+.+|+.++.|..+|++..+.... +. +|...|..+.|++++. ++++|+.|+.+.|||...
T Consensus 257 ~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~~~~~-~H~qeVCgLkws~d~~-~lASGgnDN~~~Iwd~~~ 332 (484)
T KOG0305|consen 257 GSHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVVSTLQ-GHRQEVCGLKWSPDGN-QLASGGNDNVVFIWDGLS 332 (484)
T ss_pred CCcCceeEEEecc--CceEEEecCCCcEEEEEEecchhhhhhhh-cccceeeeeEECCCCC-eeccCCCccceEeccCCC
Confidence 5 88999999998 66899999999999999998766544 77 8999999999999999 799999999999999987
Q ss_pred CCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEe--cCCcEEEEeCCCcceeecccccCCCCCCc
Q 017194 179 GRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAK--GDGVVDVINIESELNISRSKSTTKPLKGS 256 (375)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~~~~~ 256 (375)
.++...+.. |...|.+++|+|. ...+||+|+ .|+.|++||..++...
T Consensus 333 ~~p~~~~~~-------------H~aAVKA~awcP~-----q~~lLAsGGGs~D~~i~fwn~~~g~~i------------- 381 (484)
T KOG0305|consen 333 PEPKFTFTE-------------HTAAVKALAWCPW-----QSGLLATGGGSADRCIKFWNTNTGARI------------- 381 (484)
T ss_pred ccccEEEec-------------cceeeeEeeeCCC-----ccCceEEcCCCcccEEEEEEcCCCcEe-------------
Confidence 777777763 5789999999997 788999886 6899999999975322
Q ss_pred eeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEe--cCCCeEEEEeCCCceeeeecchh
Q 017194 257 QSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISG--GNDKLVKVWDCSRFQGVQTSINN 334 (375)
Q Consensus 257 ~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~--~~dg~i~iwd~~~~~~~~~~~~~ 334 (375)
..+ .....|..|.|+ +..+-|+++ -.++.|.||++.+.
T Consensus 382 ---------------------------~~v-dtgsQVcsL~Ws---k~~kEi~sthG~s~n~i~lw~~ps~--------- 421 (484)
T KOG0305|consen 382 ---------------------------DSV-DTGSQVCSLIWS---KKYKELLSTHGYSENQITLWKYPSM--------- 421 (484)
T ss_pred ---------------------------ccc-ccCCceeeEEEc---CCCCEEEEecCCCCCcEEEEecccc---------
Confidence 222 235789999999 666555543 34789999999997
Q ss_pred hhhhhhcccccceeeeeecCCCCCcEEEeeCCCeEEEEec
Q 017194 335 DLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSI 374 (375)
Q Consensus 335 ~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~iw~~ 374 (375)
+.+..+.+|..+|..++++| ||+.+++|+.|.++++|++
T Consensus 422 ~~~~~l~gH~~RVl~la~SP-dg~~i~t~a~DETlrfw~~ 460 (484)
T KOG0305|consen 422 KLVAELLGHTSRVLYLALSP-DGETIVTGAADETLRFWNL 460 (484)
T ss_pred ceeeeecCCcceeEEEEECC-CCCEEEEecccCcEEeccc
Confidence 77889999999999999999 9999999999999999986
No 65
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=2.1e-33 Score=202.85 Aligned_cols=297 Identities=14% Similarity=0.157 Sum_probs=233.6
Q ss_pred CCCceeEEEEecCCCCEEEEeCCCCcEEEEeccc------Cc-----e----eeEeeecCccEEEEEEeCCCCeEEEEcC
Q 017194 14 HKATATCCIASRDRPGFVASSGEDGCICWFDLRS------KD-----V----QLVTDVGNGPVTSLCFKSGNEDIIYVSS 78 (375)
Q Consensus 14 h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~------~~-----~----~~~~~~~~~~v~~l~~~~~~~~l~~~~~ 78 (375)
....|.+++|+|. |.+.|.|+...+.+|-.... +. + .+.-+.|.+.|+|.+|+|+|++|++|+.
T Consensus 31 dsqairav~fhp~-g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~geliatgsn 109 (350)
T KOG0641|consen 31 DSQAIRAVAFHPA-GGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIATGSN 109 (350)
T ss_pred chhheeeEEecCC-CceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCeEEecCC
Confidence 4567999999999 88999999999998875431 11 1 1233468999999999999999999999
Q ss_pred CCeEEEEECCCCCc--ccccccccCCCcceeEEEEcCC----CCeEEEEe-CCCcEEEEeCcCceeeeeEecCcccceeE
Q 017194 79 GKEVKSFDVHMPAS--WRPLESYNYNKEEINQIVCNPK----SSFLACAD-DGGDVKIIDIRQHCLYKSLRAGHSSICSS 151 (375)
Q Consensus 79 d~~i~iwd~~~~~~--~~~~~~~~~~~~~v~~~~~~~~----~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~v~~ 151 (375)
|++|++.-.....+ ...-..+..|.+.|..++|..+ +..|++++ .|..|++-|..+++..+.+. +|.+-|.+
T Consensus 110 dk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~s-ghtghila 188 (350)
T KOG0641|consen 110 DKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALS-GHTGHILA 188 (350)
T ss_pred CceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeec-CCcccEEE
Confidence 99999987654322 2233346678999999999764 45566654 57778888998999999999 99999988
Q ss_pred EEEeeCCCcEEEEeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCc
Q 017194 152 VQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGV 231 (375)
Q Consensus 152 ~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~ 231 (375)
+- +-++- ++++|+.|.+|++||++-..++..+.... ...-.....|.++++.| .|++|++|-.|..
T Consensus 189 ly-swn~~-m~~sgsqdktirfwdlrv~~~v~~l~~~~------~~~glessavaav~vdp------sgrll~sg~~dss 254 (350)
T KOG0641|consen 189 LY-SWNGA-MFASGSQDKTIRFWDLRVNSCVNTLDNDF------HDGGLESSAVAAVAVDP------SGRLLASGHADSS 254 (350)
T ss_pred EE-EecCc-EEEccCCCceEEEEeeeccceeeeccCcc------cCCCcccceeEEEEECC------CcceeeeccCCCc
Confidence 73 33444 89999999999999999888877765321 11112346789999998 7999999999999
Q ss_pred EEEEeCCCcceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEe
Q 017194 232 VDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISG 311 (375)
Q Consensus 232 i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~ 311 (375)
..+||++.+ +.++.+..|...|+++.|+ |...||+++
T Consensus 255 c~lydirg~----------------------------------------r~iq~f~phsadir~vrfs---p~a~yllt~ 291 (350)
T KOG0641|consen 255 CMLYDIRGG----------------------------------------RMIQRFHPHSADIRCVRFS---PGAHYLLTC 291 (350)
T ss_pred eEEEEeeCC----------------------------------------ceeeeeCCCccceeEEEeC---CCceEEEEe
Confidence 999999975 5566888999999999999 899999999
Q ss_pred cCCCeEEEEeCCCceeeeecchhhhhhhhcccccceeeeeecCCCCCcEEEeeCCCeEEEEecC
Q 017194 312 GNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSIS 375 (375)
Q Consensus 312 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~iw~~~ 375 (375)
+.|..|++-|++..-.. .-.......|...+..+.|+| ..-.+++.+.|.++.+|-++
T Consensus 292 syd~~ikltdlqgdla~-----el~~~vv~ehkdk~i~~rwh~-~d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 292 SYDMKIKLTDLQGDLAH-----ELPIMVVAEHKDKAIQCRWHP-QDFSFISSSADKTATLWALN 349 (350)
T ss_pred cccceEEEeecccchhh-----cCceEEEEeccCceEEEEecC-ccceeeeccCcceEEEeccC
Confidence 99999999999864110 011223456899999999999 44568889999999999764
No 66
>PLN00181 protein SPA1-RELATED; Provisional
Probab=100.00 E-value=2.6e-34 Score=265.27 Aligned_cols=269 Identities=17% Similarity=0.237 Sum_probs=217.2
Q ss_pred CCcEEEEecccCceeeE-----eeecCccEEEEEEeCCCCeEEEEcCCCeEEEEECCCCC----cc-cccccccCCCcce
Q 017194 37 DGCICWFDLRSKDVQLV-----TDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPA----SW-RPLESYNYNKEEI 106 (375)
Q Consensus 37 d~~i~iw~~~~~~~~~~-----~~~~~~~v~~l~~~~~~~~l~~~~~d~~i~iwd~~~~~----~~-~~~~~~~~~~~~v 106 (375)
+|.+++|+..+...... +..|...|.+++|+|+++++++|+.|+.|++|++.... .. .+...+. +...+
T Consensus 457 ~gl~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~-~~~~v 535 (793)
T PLN00181 457 EGLCKYLSFSKLRVKADLKQGDLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELA-SRSKL 535 (793)
T ss_pred hhhhhhhcccceEEEEeeccccccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEec-ccCce
Confidence 67788888876554333 33488999999999999999999999999999986421 10 1111222 24678
Q ss_pred eEEEEcC-CCCeEEEEeCCCcEEEEeCcCceeeeeEecCcccceeEEEEee-CCCcEEEEeecCCeEEEeeCCCCCcceE
Q 017194 107 NQIVCNP-KSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIP-WKPWEVISGGLDSKLVMWDFSKGRPNKI 184 (375)
Q Consensus 107 ~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~l~~~~~d~~i~~wd~~~~~~~~~ 184 (375)
.+++|++ ++.+|++++.||.|++||+.+++.+..+. +|...|++++|+| ++. +|++|+.|+.|++||++++..+..
T Consensus 536 ~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~-~H~~~V~~l~~~p~~~~-~L~Sgs~Dg~v~iWd~~~~~~~~~ 613 (793)
T PLN00181 536 SGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMK-EHEKRVWSIDYSSADPT-LLASGSDDGSVKLWSINQGVSIGT 613 (793)
T ss_pred eeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEec-CCCCCEEEEEEcCCCCC-EEEEEcCCCEEEEEECCCCcEEEE
Confidence 9999987 47899999999999999999999999998 9999999999997 555 899999999999999999888877
Q ss_pred EecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCcceeecccccCCCCCCceeeccccc
Q 017194 185 VNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNI 264 (375)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~ 264 (375)
+.. ...+.++.|++. ++.++++|+.||.|++||+++..
T Consensus 614 ~~~--------------~~~v~~v~~~~~-----~g~~latgs~dg~I~iwD~~~~~----------------------- 651 (793)
T PLN00181 614 IKT--------------KANICCVQFPSE-----SGRSLAFGSADHKVYYYDLRNPK----------------------- 651 (793)
T ss_pred Eec--------------CCCeEEEEEeCC-----CCCEEEEEeCCCeEEEEECCCCC-----------------------
Confidence 763 357889999653 79999999999999999998631
Q ss_pred ceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEecCCCeEEEEeCCCceeeeecchhhhhhhhcccc
Q 017194 265 RDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLN 344 (375)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 344 (375)
.....+.+|...|.++.|. ++.+|++++.|+.|++||+...... .....+..+.+|.
T Consensus 652 ----------------~~~~~~~~h~~~V~~v~f~----~~~~lvs~s~D~~ikiWd~~~~~~~---~~~~~l~~~~gh~ 708 (793)
T PLN00181 652 ----------------LPLCTMIGHSKTVSYVRFV----DSSTLVSSSTDNTLKLWDLSMSISG---INETPLHSFMGHT 708 (793)
T ss_pred ----------------ccceEecCCCCCEEEEEEe----CCCEEEEEECCCEEEEEeCCCCccc---cCCcceEEEcCCC
Confidence 1223566899999999996 5779999999999999999753110 0013455677899
Q ss_pred cceeeeeecCCCCCcEEEeeCCCeEEEEec
Q 017194 345 KKVNWLCTTPTESENLVVCDTSKVVKVYSI 374 (375)
Q Consensus 345 ~~v~~~~~~~~~~~~l~s~~~dg~v~iw~~ 374 (375)
..+..++|+| ++.+|++|+.|+.|++|+.
T Consensus 709 ~~i~~v~~s~-~~~~lasgs~D~~v~iw~~ 737 (793)
T PLN00181 709 NVKNFVGLSV-SDGYIATGSETNEVFVYHK 737 (793)
T ss_pred CCeeEEEEcC-CCCEEEEEeCCCEEEEEEC
Confidence 9999999999 8899999999999999984
No 67
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=100.00 E-value=8.5e-35 Score=224.80 Aligned_cols=258 Identities=16% Similarity=0.236 Sum_probs=217.6
Q ss_pred cCCCCCeeeecCCCceeEEEEecCCC--CEEEEeCCCCcEEEEecccCce----eeEeeecCccEEEEEEeCCCCeEEEE
Q 017194 3 DAEAKPRRLRGHKATATCCIASRDRP--GFVASSGEDGCICWFDLRSKDV----QLVTDVGNGPVTSLCFKSGNEDIIYV 76 (375)
Q Consensus 3 ~~~~~~~~l~~h~~~i~~~~~~~~~~--~~l~s~~~d~~i~iw~~~~~~~----~~~~~~~~~~v~~l~~~~~~~~l~~~ 76 (375)
..|+..+++.||.++|.+++|...+. ..|++++.|.++++|.++.++. ++...+|...|.+++..++|..+++|
T Consensus 132 ~~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~Sg 211 (423)
T KOG0313|consen 132 LKGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSG 211 (423)
T ss_pred cCCceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEecCCCCeEEee
Confidence 35778889999999999988865422 2599999999999999987764 34445999999999999999999999
Q ss_pred cCCCeEEEEECCCC----------------------CcccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcC
Q 017194 77 SSGKEVKSFDVHMP----------------------ASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQ 134 (375)
Q Consensus 77 ~~d~~i~iwd~~~~----------------------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 134 (375)
+.|..|.+|+..+. ....++..+.+|..+|.++.|++ ...+++++.|.+|+.||+.+
T Consensus 212 S~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDlet 290 (423)
T KOG0313|consen 212 SWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLET 290 (423)
T ss_pred cccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC-CCceEeecccceEEEEEeec
Confidence 99999999993321 11234556778999999999998 66899999999999999999
Q ss_pred ceeeeeEecCcccceeEEEEeeCCCcEEEEeecCCeEEEeeCCCCC--cceEEecCCCCCCCCCCcccCCCceeEEeecC
Q 017194 135 HCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGR--PNKIVNFGLPENNGNAGQCYNPAFVHAIAIPD 212 (375)
Q Consensus 135 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 212 (375)
+..+.++. -...++++.++|... +|++|+.|..+++||.+++. .+..--.+ |...|.++.|+|
T Consensus 291 g~~~~~~~--~~ksl~~i~~~~~~~-Ll~~gssdr~irl~DPR~~~gs~v~~s~~g------------H~nwVssvkwsp 355 (423)
T KOG0313|consen 291 GGLKSTLT--TNKSLNCISYSPLSK-LLASGSSDRHIRLWDPRTGDGSVVSQSLIG------------HKNWVSSVKWSP 355 (423)
T ss_pred ccceeeee--cCcceeEeecccccc-eeeecCCCCceeecCCCCCCCceeEEeeec------------chhhhhheecCC
Confidence 99988887 467899999999887 89999999999999999764 22222234 788999999999
Q ss_pred CccccCCCCEEEEEecCCcEEEEeCCCcceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCcc
Q 017194 213 ADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAA 292 (375)
Q Consensus 213 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (375)
. +...|++++.|+++++||+++.. ..++.+.+|...
T Consensus 356 ~-----~~~~~~S~S~D~t~klWDvRS~k---------------------------------------~plydI~~h~DK 391 (423)
T KOG0313|consen 356 T-----NEFQLVSGSYDNTVKLWDVRSTK---------------------------------------APLYDIAGHNDK 391 (423)
T ss_pred C-----CceEEEEEecCCeEEEEEeccCC---------------------------------------CcceeeccCCce
Confidence 7 78899999999999999999742 356788999999
Q ss_pred EEEEEEeecCCCCcEEEEecCCCeEEEEeCCC
Q 017194 293 ASCVAFSMFGERGKYLISGGNDKLVKVWDCSR 324 (375)
Q Consensus 293 v~~~~~s~~~~~~~~l~s~~~dg~i~iwd~~~ 324 (375)
|.++.|. ++.++++|+.|++|+|+....
T Consensus 392 vl~vdW~----~~~~IvSGGaD~~l~i~~~~~ 419 (423)
T KOG0313|consen 392 VLSVDWN----EGGLIVSGGADNKLRIFKGSP 419 (423)
T ss_pred EEEEecc----CCceEEeccCcceEEEecccc
Confidence 9999996 788999999999999997654
No 68
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=100.00 E-value=2.1e-34 Score=246.81 Aligned_cols=274 Identities=21% Similarity=0.324 Sum_probs=238.6
Q ss_pred CCCceeEEEEecCCCCEEEEeCCCCcEEEEecccCceeeE-eeecCccEEEEEEeCCCCeEEEEcCCCeEEEEECCCCCc
Q 017194 14 HKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLV-TDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPAS 92 (375)
Q Consensus 14 h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~-~~~~~~~v~~l~~~~~~~~l~~~~~d~~i~iwd~~~~~~ 92 (375)
|...+.|..|. ..++++++.+++|++|+..++..+.. +.+|.+.|.++++...+..|++|+.|.++++||..++.+
T Consensus 207 ~~~~~~~~q~~---~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C 283 (537)
T KOG0274|consen 207 DDHVVLCLQLH---DGFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGEC 283 (537)
T ss_pred Ccchhhhheee---cCeEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcE
Confidence 56778888888 24899999999999999999998888 999999999999988788999999999999999988654
Q ss_pred ccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCceeeeeEecCcccceeEEEEeeCCCcEEEEeecCCeEE
Q 017194 93 WRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLV 172 (375)
Q Consensus 93 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~ 172 (375)
...+.+|...|.++...+ .++++|+.|.+|++|++.++..+..+. +|..+|+++..+ ++ ++++|+.|++|+
T Consensus 284 ---~~~l~gh~stv~~~~~~~--~~~~sgs~D~tVkVW~v~n~~~l~l~~-~h~~~V~~v~~~--~~-~lvsgs~d~~v~ 354 (537)
T KOG0274|consen 284 ---THSLQGHTSSVRCLTIDP--FLLVSGSRDNTVKVWDVTNGACLNLLR-GHTGPVNCVQLD--EP-LLVSGSYDGTVK 354 (537)
T ss_pred ---EEEecCCCceEEEEEccC--ceEeeccCCceEEEEeccCcceEEEec-cccccEEEEEec--CC-EEEEEecCceEE
Confidence 455557899999888654 478889999999999999999999999 899999999998 44 899999999999
Q ss_pred EeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCcceeecccccCCC
Q 017194 173 MWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKP 252 (375)
Q Consensus 173 ~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~ 252 (375)
+||+.++++++.+.. |...|.++.+.+ . ..+++|+.|+.|++||+++..
T Consensus 355 VW~~~~~~cl~sl~g-------------H~~~V~sl~~~~------~-~~~~Sgs~D~~IkvWdl~~~~----------- 403 (537)
T KOG0274|consen 355 VWDPRTGKCLKSLSG-------------HTGRVYSLIVDS------E-NRLLSGSLDTTIKVWDLRTKR----------- 403 (537)
T ss_pred EEEhhhceeeeeecC-------------CcceEEEEEecC------c-ceEEeeeeccceEeecCCchh-----------
Confidence 999999999999983 578999998854 2 999999999999999999741
Q ss_pred CCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEecCCCeEEEEeCCCceeeeecc
Q 017194 253 LKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSI 332 (375)
Q Consensus 253 ~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 332 (375)
+++..+.+|..-+..+.+ .+++|++++.|+.|++||..++
T Consensus 404 ----------------------------~c~~tl~~h~~~v~~l~~-----~~~~Lvs~~aD~~Ik~WD~~~~------- 443 (537)
T KOG0274|consen 404 ----------------------------KCIHTLQGHTSLVSSLLL-----RDNFLVSSSADGTIKLWDAEEG------- 443 (537)
T ss_pred ----------------------------hhhhhhcCCccccccccc-----ccceeEeccccccEEEeecccC-------
Confidence 466788999998877765 4689999999999999999998
Q ss_pred hhhhhhhhcc-cccceeeeeecCCCCCcEEEeeCCCeEEEEecC
Q 017194 333 NNDLLIKNIN-LNKKVNWLCTTPTESENLVVCDTSKVVKVYSIS 375 (375)
Q Consensus 333 ~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~s~~~dg~v~iw~~~ 375 (375)
+++..+.+ |...|..+++. ...+++++.||.+++||++
T Consensus 444 --~~~~~~~~~~~~~v~~l~~~---~~~il~s~~~~~~~l~dl~ 482 (537)
T KOG0274|consen 444 --ECLRTLEGRHVGGVSALALG---KEEILCSSDDGSVKLWDLR 482 (537)
T ss_pred --ceeeeeccCCcccEEEeecC---cceEEEEecCCeeEEEecc
Confidence 66666666 77889888875 3478999999999999984
No 69
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=1.7e-33 Score=231.83 Aligned_cols=248 Identities=25% Similarity=0.403 Sum_probs=216.2
Q ss_pred CCCeeeecCCCceeEEEEecCCCCEEEEeCCCCcEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEEcCCCeEEEE
Q 017194 6 AKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSF 85 (375)
Q Consensus 6 ~~~~~l~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i~iw 85 (375)
+....+.+|...+.++.|+|+ ++++++++.||.|++|++.+++....+..|...+.++.|+++++++++++.++.+++|
T Consensus 42 ~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~ 120 (289)
T cd00200 42 ELLRTLKGHTGPVRDVAASAD-GTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVW 120 (289)
T ss_pred CcEEEEecCCcceeEEEECCC-CCEEEEEcCCCeEEEEEcCcccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEE
Confidence 355678889999999999998 7899999999999999999988888888899999999999998888888889999999
Q ss_pred ECCCCCcccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCceeeeeEecCcccceeEEEEeeCCCcEEEEe
Q 017194 86 DVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISG 165 (375)
Q Consensus 86 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~ 165 (375)
|+.+++. ...+..|...+.++.|+|++.++++++.++.|++||+++++.+..+. .|...+.++.|+|+++ .++++
T Consensus 121 ~~~~~~~---~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~-~~~~~i~~~~~~~~~~-~l~~~ 195 (289)
T cd00200 121 DVETGKC---LTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLT-GHTGEVNSVAFSPDGE-KLLSS 195 (289)
T ss_pred ECCCcEE---EEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEccccccceeEe-cCccccceEEECCCcC-EEEEe
Confidence 9986543 33444678899999999999899988889999999999888888898 8988999999999997 68888
Q ss_pred ecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCcceeec
Q 017194 166 GLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISR 245 (375)
Q Consensus 166 ~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~ 245 (375)
+.++.|++||++.++.+..+.. +...+.++.++| ++.++++++.+|.|++||+.+.
T Consensus 196 ~~~~~i~i~d~~~~~~~~~~~~-------------~~~~i~~~~~~~------~~~~~~~~~~~~~i~i~~~~~~----- 251 (289)
T cd00200 196 SSDGTIKLWDLSTGKCLGTLRG-------------HENGVNSVAFSP------DGYLLASGSEDGTIRVWDLRTG----- 251 (289)
T ss_pred cCCCcEEEEECCCCceecchhh-------------cCCceEEEEEcC------CCcEEEEEcCCCcEEEEEcCCc-----
Confidence 8899999999998877776642 356899999998 6888888888999999999863
Q ss_pred ccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEecCCCeEEEEe
Q 017194 246 SKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWD 321 (375)
Q Consensus 246 ~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd 321 (375)
.....+..|...+.+++|+ +++++|++++.||.|++|+
T Consensus 252 -----------------------------------~~~~~~~~~~~~i~~~~~~---~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 252 -----------------------------------ECVQTLSGHTNSVTSLAWS---PDGKRLASGSADGTIRIWD 289 (289)
T ss_pred -----------------------------------eeEEEccccCCcEEEEEEC---CCCCEEEEecCCCeEEecC
Confidence 3334556788899999999 8999999999999999996
No 70
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=5e-35 Score=221.56 Aligned_cols=299 Identities=16% Similarity=0.187 Sum_probs=246.5
Q ss_pred CCCeeeecCCCceeEEEEecCCCCEEEEeCCCCcEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEEcCCCeEEEE
Q 017194 6 AKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSF 85 (375)
Q Consensus 6 ~~~~~l~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i~iw 85 (375)
..++.|.||++.|+.++.... ...+.+++.|.+-+||.++++.++..+.+|.+.|+++.|++.+.++++++.|++..||
T Consensus 139 ~lvre~~GHkDGiW~Vaa~~t-qpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW 217 (481)
T KOG0300|consen 139 RLVRELEGHKDGIWHVAADST-QPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIW 217 (481)
T ss_pred eehhhhcccccceeeehhhcC-CcceeecccccceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcchHHH
Confidence 346778899999999998876 6799999999999999999999999999999999999999999999999999999999
Q ss_pred ECC----CC---------------------------------CcccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEE
Q 017194 86 DVH----MP---------------------------------ASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVK 128 (375)
Q Consensus 86 d~~----~~---------------------------------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 128 (375)
... .+ ....++..+.+|...|.+..|...++.+++++.|.+..
T Consensus 218 ~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAn 297 (481)
T KOG0300|consen 218 KAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTAN 297 (481)
T ss_pred HHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccce
Confidence 721 10 01123445667888999999999999999999999999
Q ss_pred EEeCcCceeeeeEecCcccceeEEEEeeCCCcEEEEeecCCeEEEeeCCCCCc-ceEEecCCCCCCCCCCcccCCCceeE
Q 017194 129 IIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRP-NKIVNFGLPENNGNAGQCYNPAFVHA 207 (375)
Q Consensus 129 iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~v~~ 207 (375)
+||+++++.+..+. +|....+.++-+|..+ ++++.+.|.+.++||.+..-. +..++ + |...|++
T Consensus 298 lwDVEtge~v~~Lt-GHd~ELtHcstHptQr-LVvTsSrDtTFRLWDFReaI~sV~VFQ-G------------HtdtVTS 362 (481)
T KOG0300|consen 298 LWDVETGEVVNILT-GHDSELTHCSTHPTQR-LVVTSSRDTTFRLWDFREAIQSVAVFQ-G------------HTDTVTS 362 (481)
T ss_pred eeeeccCceecccc-CcchhccccccCCcce-EEEEeccCceeEeccchhhcceeeeec-c------------cccceeE
Confidence 99999999999999 9999999999999988 899999999999999984322 23333 4 6789999
Q ss_pred EeecCCccccCCCCEEEEEecCCcEEEEeCCCcceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeec
Q 017194 208 IAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVG 287 (375)
Q Consensus 208 ~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~ 287 (375)
+.|.. +..+++|+.|.+|++||+++.+.+ +.++.
T Consensus 363 ~vF~~-------dd~vVSgSDDrTvKvWdLrNMRsp---------------------------------------lATIR 396 (481)
T KOG0300|consen 363 VVFNT-------DDRVVSGSDDRTVKVWDLRNMRSP---------------------------------------LATIR 396 (481)
T ss_pred EEEec-------CCceeecCCCceEEEeeeccccCc---------------------------------------ceeee
Confidence 99985 788999999999999999975322 22332
Q ss_pred CCCccEEEEEEeecCCCCcEEEEecCCCeEEEEeCCCceeeeecchhhhhhhhcccccceeeeeecCC-CCCcEEEeeCC
Q 017194 288 GHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPT-ESENLVVCDTS 366 (375)
Q Consensus 288 ~~~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~l~s~~~d 366 (375)
. ..+++.++++ ..+..|+.--.+..|++||++...... -+.....+|..-|.|++|... --..|++|+.|
T Consensus 397 t-dS~~NRvavs---~g~~iIAiPhDNRqvRlfDlnG~RlaR-----lPrtsRqgHrRMV~c~AW~eehp~cnLftcGFD 467 (481)
T KOG0300|consen 397 T-DSPANRVAVS---KGHPIIAIPHDNRQVRLFDLNGNRLAR-----LPRTSRQGHRRMVTCCAWLEEHPACNLFTCGFD 467 (481)
T ss_pred c-CCccceeEee---cCCceEEeccCCceEEEEecCCCcccc-----CCcccccccceeeeeeeccccCccccccccccc
Confidence 2 5678999998 777789988999999999998863210 111234679999999999741 12458999999
Q ss_pred CeEEEEecC
Q 017194 367 KVVKVYSIS 375 (375)
Q Consensus 367 g~v~iw~~~ 375 (375)
..+.=|+++
T Consensus 468 R~v~gW~in 476 (481)
T KOG0300|consen 468 RMVAGWKIN 476 (481)
T ss_pred ceeeeeEec
Confidence 999999874
No 71
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=1.7e-35 Score=235.54 Aligned_cols=255 Identities=13% Similarity=0.156 Sum_probs=218.1
Q ss_pred ceeeEeeecCccEEEEEEeC-CCCeEEEEcCCCeEEEEECCCCCcccccccccCCCcceeEEEEcCCCCeEEEEeCCCcE
Q 017194 49 DVQLVTDVGNGPVTSLCFKS-GNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDV 127 (375)
Q Consensus 49 ~~~~~~~~~~~~v~~l~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i 127 (375)
+.+..+.+|+..|+++.|.| .+.+|++++.|+.|+||++.. ....+.++.+|..+|.+++|+++|..+++++-|+.+
T Consensus 205 k~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~--~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~l 282 (503)
T KOG0282|consen 205 KLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYD--DRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFL 282 (503)
T ss_pred hheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEec--CcceehhhhcchhhhhhhhccccCCeeeeeecceee
Confidence 34778889999999999999 888999999999999999986 357888999999999999999999999999999999
Q ss_pred EEEeCcCceeeeeEecCcccceeEEEEeeCCCcEEEEeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeE
Q 017194 128 KIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHA 207 (375)
Q Consensus 128 ~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 207 (375)
++||+++|+++..+. ....++++.|+|++..+|++|+.|+.|+.||+++++.++.+.. |-..|..
T Consensus 283 KlwDtETG~~~~~f~--~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~-------------hLg~i~~ 347 (503)
T KOG0282|consen 283 KLWDTETGQVLSRFH--LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDR-------------HLGAILD 347 (503)
T ss_pred eeeccccceEEEEEe--cCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHh-------------hhhheee
Confidence 999999999999998 5668899999999966999999999999999999998888763 4678999
Q ss_pred EeecCCccccCCCCEEEEEecCCcEEEEeCCCcceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeec
Q 017194 208 IAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVG 287 (375)
Q Consensus 208 ~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~ 287 (375)
+.|-+ +++.+++.+.|+.++||+.+.+... +. ...
T Consensus 348 i~F~~------~g~rFissSDdks~riWe~~~~v~i-------------------------------------k~--i~~ 382 (503)
T KOG0282|consen 348 ITFVD------EGRRFISSSDDKSVRIWENRIPVPI-------------------------------------KN--IAD 382 (503)
T ss_pred eEEcc------CCceEeeeccCccEEEEEcCCCccc-------------------------------------hh--hcc
Confidence 99999 7999999999999999999874211 11 122
Q ss_pred CCCccEEEEEEeecCCCCcEEEEecCCCeEEEEeCCCceeeeecchhhhhhhhccccc--ceeeeeecCCCCCcEEEeeC
Q 017194 288 GHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNK--KVNWLCTTPTESENLVVCDT 365 (375)
Q Consensus 288 ~~~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~~l~s~~~ 365 (375)
.+.....++..+ |+++++++=+.|+.|.++.+...... ..-+.+.+|.. --..+.|+| ||++|++|+.
T Consensus 383 ~~~hsmP~~~~~---P~~~~~~aQs~dN~i~ifs~~~~~r~------nkkK~feGh~vaGys~~v~fSp-DG~~l~SGds 452 (503)
T KOG0282|consen 383 PEMHTMPCLTLH---PNGKWFAAQSMDNYIAIFSTVPPFRL------NKKKRFEGHSVAGYSCQVDFSP-DGRTLCSGDS 452 (503)
T ss_pred hhhccCcceecC---CCCCeehhhccCceEEEEeccccccc------CHhhhhcceeccCceeeEEEcC-CCCeEEeecC
Confidence 223456677888 99999999999999999997765332 44456777764 456678999 9999999999
Q ss_pred CCeEEEEecC
Q 017194 366 SKVVKVYSIS 375 (375)
Q Consensus 366 dg~v~iw~~~ 375 (375)
||.+.+||.+
T Consensus 453 dG~v~~wdwk 462 (503)
T KOG0282|consen 453 DGKVNFWDWK 462 (503)
T ss_pred CccEEEeech
Confidence 9999999963
No 72
>PTZ00421 coronin; Provisional
Probab=100.00 E-value=6.1e-33 Score=237.65 Aligned_cols=269 Identities=12% Similarity=0.104 Sum_probs=201.7
Q ss_pred CCceeEEEEecCCCCEEEEeCCCCcEEEEecccCcee-------------eEeeecCccEEEEEEeC-CCCeEEEEcCCC
Q 017194 15 KATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQ-------------LVTDVGNGPVTSLCFKS-GNEDIIYVSSGK 80 (375)
Q Consensus 15 ~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~-------------~~~~~~~~~v~~l~~~~-~~~~l~~~~~d~ 80 (375)
-..|+....+++ +..+++++.+.....|+...+..+ ..+.+|.+.|.+++|+| ++++|++++.|+
T Consensus 20 ~~~i~~~~~~~d-~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~Dg 98 (493)
T PTZ00421 20 FLNVTPSTALWD-CSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDG 98 (493)
T ss_pred eeccccccccCC-CCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCC
Confidence 345666666666 556677777777777775433221 24678999999999999 788999999999
Q ss_pred eEEEEECCCCCc----ccccccccCCCcceeEEEEcCCC-CeEEEEeCCCcEEEEeCcCceeeeeEecCcccceeEEEEe
Q 017194 81 EVKSFDVHMPAS----WRPLESYNYNKEEINQIVCNPKS-SFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFI 155 (375)
Q Consensus 81 ~i~iwd~~~~~~----~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~ 155 (375)
+|++||+.++.. ...+..+.+|...|.+++|+|++ ++|++++.|+.|++||+++++.+..+. +|...|.+++|+
T Consensus 99 tIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~-~h~~~V~sla~s 177 (493)
T PTZ00421 99 TIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIK-CHSDQITSLEWN 177 (493)
T ss_pred EEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEc-CCCCceEEEEEE
Confidence 999999976432 23456778899999999999975 689999999999999999999988998 899999999999
Q ss_pred eCCCcEEEEeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEe----cCCc
Q 017194 156 PWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAK----GDGV 231 (375)
Q Consensus 156 ~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~----~dg~ 231 (375)
|++. +|++++.|++|++||+++++.+..+..+ .......+.|.+ ++..+++++ .|+.
T Consensus 178 pdG~-lLatgs~Dg~IrIwD~rsg~~v~tl~~H------------~~~~~~~~~w~~------~~~~ivt~G~s~s~Dr~ 238 (493)
T PTZ00421 178 LDGS-LLCTTSKDKKLNIIDPRDGTIVSSVEAH------------ASAKSQRCLWAK------RKDLIITLGCSKSQQRQ 238 (493)
T ss_pred CCCC-EEEEecCCCEEEEEECCCCcEEEEEecC------------CCCcceEEEEcC------CCCeEEEEecCCCCCCe
Confidence 9998 8999999999999999999887777633 122344567777 455665543 4789
Q ss_pred EEEEeCCCcceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeec-CCCccEEEEEEeecCCCCcEEEE
Q 017194 232 VDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVG-GHTAAASCVAFSMFGERGKYLIS 310 (375)
Q Consensus 232 i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~~~l~s 310 (375)
|++||+++.... +.... .+...+....|+ +++++|++
T Consensus 239 VklWDlr~~~~p---------------------------------------~~~~~~d~~~~~~~~~~d---~d~~~L~l 276 (493)
T PTZ00421 239 IMLWDTRKMASP---------------------------------------YSTVDLDQSSALFIPFFD---EDTNLLYI 276 (493)
T ss_pred EEEEeCCCCCCc---------------------------------------eeEeccCCCCceEEEEEc---CCCCEEEE
Confidence 999999864211 11111 123345556777 89999988
Q ss_pred ec-CCCeEEEEeCCCceeeeecchhhhhhhhcccccceeeeeecC
Q 017194 311 GG-NDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTP 354 (375)
Q Consensus 311 ~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 354 (375)
++ .|+.|++||+.+++... .....+..++..++|.|
T Consensus 277 ggkgDg~Iriwdl~~~~~~~--------~~~~~s~~~~~g~~~~p 313 (493)
T PTZ00421 277 GSKGEGNIRCFELMNERLTF--------CSSYSSVEPHKGLCMMP 313 (493)
T ss_pred EEeCCCeEEEEEeeCCceEE--------EeeccCCCCCcceEecc
Confidence 87 49999999999874221 11123455677788877
No 73
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7e-34 Score=234.85 Aligned_cols=244 Identities=18% Similarity=0.245 Sum_probs=218.3
Q ss_pred cCCCceeEEEEecCCCCEEEEeCCCCcEEEEecccCceeeEeee-cCccEEEEEEeCCCCeEEEEcCCCeEEEEECCCCC
Q 017194 13 GHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDV-GNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPA 91 (375)
Q Consensus 13 ~h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~-~~~~v~~l~~~~~~~~l~~~~~d~~i~iwd~~~~~ 91 (375)
.+++.|+++.|+++ |.+||+|..+|.|.|||..+.+.+..+.+ |...|-+++|. +..+.+|+.++.|..+|++..+
T Consensus 215 ~~~~~vtSv~ws~~-G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~ 291 (484)
T KOG0305|consen 215 FGEELVTSVKWSPD-GSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQ 291 (484)
T ss_pred cCCCceEEEEECCC-CCEEEEeecCCeEEEEehhhccccccccCCcCceeEEEecc--CceEEEecCCCcEEEEEEecch
Confidence 34889999999999 89999999999999999999999999998 99999999998 5678999999999999999754
Q ss_pred cccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCceeeeeEecCcccceeEEEEeeCCCcEEEEee--cCC
Q 017194 92 SWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGG--LDS 169 (375)
Q Consensus 92 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~--~d~ 169 (375)
.... .+.+|...|..+.|++|++++|+|+.|+.+.|||....+++..+. .|...|.+++|+|....+||+|+ .|+
T Consensus 292 ~~~~--~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~-~H~aAVKA~awcP~q~~lLAsGGGs~D~ 368 (484)
T KOG0305|consen 292 HVVS--TLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFT-EHTAAVKALAWCPWQSGLLATGGGSADR 368 (484)
T ss_pred hhhh--hhhcccceeeeeEECCCCCeeccCCCccceEeccCCCccccEEEe-ccceeeeEeeeCCCccCceEEcCCCccc
Confidence 3333 478899999999999999999999999999999998888888888 99999999999998877899875 699
Q ss_pred eEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEE--ecCCcEEEEeCCCcceeeccc
Q 017194 170 KLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVA--KGDGVVDVINIESELNISRSK 247 (375)
Q Consensus 170 ~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~--~~dg~i~i~d~~~~~~~~~~~ 247 (375)
.|++||..+++.+..+..+ ..|.+|.|++ ..+.|+++ ..++.|.||+..+.
T Consensus 369 ~i~fwn~~~g~~i~~vdtg--------------sQVcsL~Wsk------~~kEi~sthG~s~n~i~lw~~ps~------- 421 (484)
T KOG0305|consen 369 CIKFWNTNTGARIDSVDTG--------------SQVCSLIWSK------KYKELLSTHGYSENQITLWKYPSM------- 421 (484)
T ss_pred EEEEEEcCCCcEecccccC--------------CceeeEEEcC------CCCEEEEecCCCCCcEEEEecccc-------
Confidence 9999999999999888755 8999999999 56666554 46779999999863
Q ss_pred ccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEecCCCeEEEEeCCCc
Q 017194 248 STTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRF 325 (375)
Q Consensus 248 ~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd~~~~ 325 (375)
..+..+.+|...|..++++ |||..+++|+.|.++++|++-..
T Consensus 422 ---------------------------------~~~~~l~gH~~RVl~la~S---Pdg~~i~t~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 422 ---------------------------------KLVAELLGHTSRVLYLALS---PDGETIVTGAADETLRFWNLFDE 463 (484)
T ss_pred ---------------------------------ceeeeecCCcceeEEEEEC---CCCCEEEEecccCcEEeccccCC
Confidence 4556889999999999999 99999999999999999998874
No 74
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=100.00 E-value=4.5e-34 Score=210.91 Aligned_cols=268 Identities=21% Similarity=0.205 Sum_probs=213.5
Q ss_pred cCCCCCeeeecCCCceeEEEEecCCCCEEEEeCCCCcEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEEcCC---
Q 017194 3 DAEAKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSG--- 79 (375)
Q Consensus 3 ~~~~~~~~l~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d--- 79 (375)
..++.+.++.||++.|+|++.+.+ .+.+++|+.|.+++|||+++|+++..++. ..+|..+.|+++|++++....+
T Consensus 40 ~nGerlGty~GHtGavW~~Did~~-s~~liTGSAD~t~kLWDv~tGk~la~~k~-~~~Vk~~~F~~~gn~~l~~tD~~mg 117 (327)
T KOG0643|consen 40 LNGERLGTYDGHTGAVWCCDIDWD-SKHLITGSADQTAKLWDVETGKQLATWKT-NSPVKRVDFSFGGNLILASTDKQMG 117 (327)
T ss_pred cCCceeeeecCCCceEEEEEecCC-cceeeeccccceeEEEEcCCCcEEEEeec-CCeeEEEeeccCCcEEEEEehhhcC
Confidence 367888999999999999999998 89999999999999999999999999984 7899999999999987776543
Q ss_pred --CeEEEEECCCCC----cccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCcee-eeeEecCcccceeEE
Q 017194 80 --KEVKSFDVHMPA----SWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCL-YKSLRAGHSSICSSV 152 (375)
Q Consensus 80 --~~i~iwd~~~~~----~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~~v~~~ 152 (375)
+.|.++|++... ...++..+..+...++.+.|.|-+++|++|.+||.|.+||+++++. +..-+ .|...|+.|
T Consensus 118 ~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~-~h~~~Ind~ 196 (327)
T KOG0643|consen 118 YTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETIIAGHEDGSISIYDARTGKELVDSDE-EHSSKINDL 196 (327)
T ss_pred cceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEEEEecCCCcEEEEEcccCceeeechh-hhccccccc
Confidence 589999998433 2344555556688999999999999999999999999999999854 55555 899999999
Q ss_pred EEeeCCCcEEEEeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcE
Q 017194 153 QFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVV 232 (375)
Q Consensus 153 ~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i 232 (375)
+++++.. ++++++.|.+-++||.++-+.++++... .++++.+++| ....++.|+....-
T Consensus 197 q~s~d~T-~FiT~s~Dttakl~D~~tl~v~Kty~te--------------~PvN~aaisP------~~d~VilgGGqeA~ 255 (327)
T KOG0643|consen 197 QFSRDRT-YFITGSKDTTAKLVDVRTLEVLKTYTTE--------------RPVNTAAISP------LLDHVILGGGQEAM 255 (327)
T ss_pred cccCCcc-eEEecccCccceeeeccceeeEEEeeec--------------ccccceeccc------ccceEEecCCceee
Confidence 9999998 7999999999999999999999999844 7899999999 45566655433221
Q ss_pred EEE--eCCCcceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEE
Q 017194 233 DVI--NIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLIS 310 (375)
Q Consensus 233 ~i~--d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s 310 (375)
-+= +.+.++...++.. ....+.+..+++|-++|++++|+ |+|+..++
T Consensus 256 dVTTT~~r~GKFEArFyh----------------------------~i~eEEigrvkGHFGPINsvAfh---PdGksYsS 304 (327)
T KOG0643|consen 256 DVTTTSTRAGKFEARFYH----------------------------LIFEEEIGRVKGHFGPINSVAFH---PDGKSYSS 304 (327)
T ss_pred eeeeecccccchhhhHHH----------------------------HHHHHHhccccccccCcceeEEC---CCCccccc
Confidence 111 1111111000000 00112344788999999999999 99999999
Q ss_pred ecCCCeEEEEeCCCc
Q 017194 311 GGNDKLVKVWDCSRF 325 (375)
Q Consensus 311 ~~~dg~i~iwd~~~~ 325 (375)
|++||.|++.-....
T Consensus 305 GGEDG~VR~h~Fd~~ 319 (327)
T KOG0643|consen 305 GGEDGYVRLHHFDSN 319 (327)
T ss_pred CCCCceEEEEEeccc
Confidence 999999999876653
No 75
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=9.6e-34 Score=213.96 Aligned_cols=248 Identities=15% Similarity=0.222 Sum_probs=211.9
Q ss_pred CCCeeeecCCCceeEEEEecCCCCEEEEeCCCCcEEEEecccCceeeEeeecCccEEEEEEeCCCC--eEEEEcCCCeEE
Q 017194 6 AKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNE--DIIYVSSGKEVK 83 (375)
Q Consensus 6 ~~~~~l~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~--~l~~~~~d~~i~ 83 (375)
.++..+..|.++|++++.+ +.++|+|+.|-+|+|||+.+...+..+-.|.+.|+++.|.+.-. .|++|+.||.|.
T Consensus 34 ~~lF~~~aH~~sitavAVs---~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~ 110 (362)
T KOG0294|consen 34 KPLFAFSAHAGSITALAVS---GPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHII 110 (362)
T ss_pred eccccccccccceeEEEec---ceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCcEE
Confidence 3467788999999999996 78999999999999999999999999999999999999998764 899999999999
Q ss_pred EEECCCCCcccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCceeeeeEecCcccceeEEEEeeCCCcEEE
Q 017194 84 SFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVI 163 (375)
Q Consensus 84 iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~ 163 (375)
+|+... +..+..+++|.+.|+.++.+|.+++-++.+.|+.+++||+-+|+.-..++ -....+.+.|+|.|. .|+
T Consensus 111 iw~~~~---W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~--L~~~at~v~w~~~Gd-~F~ 184 (362)
T KOG0294|consen 111 IWRVGS---WELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLN--LKNKATLVSWSPQGD-HFV 184 (362)
T ss_pred EEEcCC---eEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeec--cCCcceeeEEcCCCC-EEE
Confidence 999884 78888899999999999999999999999999999999999887766555 233445599999999 577
Q ss_pred EeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCccee
Q 017194 164 SGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNI 243 (375)
Q Consensus 164 ~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~ 243 (375)
.+..+ .|-+|.+.+.+....+.. +..+.++.|. ++..|++|..|+.|.+||..+.
T Consensus 185 v~~~~-~i~i~q~d~A~v~~~i~~--------------~~r~l~~~~l-------~~~~L~vG~d~~~i~~~D~ds~--- 239 (362)
T KOG0294|consen 185 VSGRN-KIDIYQLDNASVFREIEN--------------PKRILCATFL-------DGSELLVGGDNEWISLKDTDSD--- 239 (362)
T ss_pred EEecc-EEEEEecccHhHhhhhhc--------------cccceeeeec-------CCceEEEecCCceEEEeccCCC---
Confidence 66655 689999998887777662 3567777776 5899999999999999999863
Q ss_pred ecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEecCCCeEEEEeCC
Q 017194 244 SRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCS 323 (375)
Q Consensus 244 ~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd~~ 323 (375)
.+...+.+|...|..+.+- ..|++.||+|++.||.|+|||++
T Consensus 240 -------------------------------------~~~~~~~AH~~RVK~i~~~-~~~~~~~lvTaSSDG~I~vWd~~ 281 (362)
T KOG0294|consen 240 -------------------------------------TPLTEFLAHENRVKDIASY-TNPEHEYLVTASSDGFIKVWDID 281 (362)
T ss_pred -------------------------------------ccceeeecchhheeeeEEE-ecCCceEEEEeccCceEEEEEcc
Confidence 4456888999999999842 11678999999999999999998
Q ss_pred Cc
Q 017194 324 RF 325 (375)
Q Consensus 324 ~~ 325 (375)
..
T Consensus 282 ~~ 283 (362)
T KOG0294|consen 282 ME 283 (362)
T ss_pred cc
Confidence 76
No 76
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=100.00 E-value=2.8e-33 Score=220.12 Aligned_cols=285 Identities=16% Similarity=0.195 Sum_probs=240.8
Q ss_pred CceeEEEEecCCCCEEEEeCCCCcEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEEcCCCeEEEEECCCCCcccc
Q 017194 16 ATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRP 95 (375)
Q Consensus 16 ~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~ 95 (375)
..|.++...|. ...+++|+.|..+.++|..+++.+..+++|...|+.+.|+|+...+++++.|..|+||...... .
T Consensus 220 pgi~ald~~~s-~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s---~ 295 (506)
T KOG0289|consen 220 PGITALDIIPS-SSKILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSS---E 295 (506)
T ss_pred CCeeEEeecCC-CCcceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeecccccc---C
Confidence 46888888887 6899999999999999999999999999999999999999999999999999999999987644 3
Q ss_pred cccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCceeeeeEec-CcccceeEEEEeeCCCcEEEEeecCCeEEEe
Q 017194 96 LESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRA-GHSSICSSVQFIPWKPWEVISGGLDSKLVMW 174 (375)
Q Consensus 96 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~w 174 (375)
......|..+|+.+..+|.|.||++++.|++..+.|++++..+..... ...-.+++.+|+|||- +|.+|..|+.|++|
T Consensus 296 ~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgL-ifgtgt~d~~vkiw 374 (506)
T KOG0289|consen 296 PTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGL-IFGTGTPDGVVKIW 374 (506)
T ss_pred ccccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCce-EEeccCCCceEEEE
Confidence 344556799999999999999999999999999999999988877661 1234589999999998 89999999999999
Q ss_pred eCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCcceeecccccCCCCC
Q 017194 175 DFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLK 254 (375)
Q Consensus 175 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~ 254 (375)
|+.++.....|.. |.++|..++|+. +|.+|++++.|+.|++||++..+.
T Consensus 375 dlks~~~~a~Fpg-------------ht~~vk~i~FsE------NGY~Lat~add~~V~lwDLRKl~n------------ 423 (506)
T KOG0289|consen 375 DLKSQTNVAKFPG-------------HTGPVKAISFSE------NGYWLATAADDGSVKLWDLRKLKN------------ 423 (506)
T ss_pred EcCCccccccCCC-------------CCCceeEEEecc------CceEEEEEecCCeEEEEEehhhcc------------
Confidence 9999887777763 689999999998 899999999999999999996421
Q ss_pred CceeecccccceeeeeeeecCCcceeEeeeeec-CCCccEEEEEEeecCCCCcEEEEecCCCeEEEEeCCCceeeeecch
Q 017194 255 GSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVG-GHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSIN 333 (375)
Q Consensus 255 ~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 333 (375)
+.++. ....++.++.|. +.|.+|+.++.|=.|++++-.+.+-
T Consensus 424 ----------------------------~kt~~l~~~~~v~s~~fD---~SGt~L~~~g~~l~Vy~~~k~~k~W------ 466 (506)
T KOG0289|consen 424 ----------------------------FKTIQLDEKKEVNSLSFD---QSGTYLGIAGSDLQVYICKKKTKSW------ 466 (506)
T ss_pred ----------------------------cceeeccccccceeEEEc---CCCCeEEeecceeEEEEEecccccc------
Confidence 11111 112378999999 8999999998887777776544322
Q ss_pred hhhhhhhcccccceeeeeecCCCCCcEEEeeCCCeEEEEecC
Q 017194 334 NDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSIS 375 (375)
Q Consensus 334 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~iw~~~ 375 (375)
..+..+..|.+..+++.|.. ..+++++++.|..++++.++
T Consensus 467 -~~~~~~~~~sg~st~v~Fg~-~aq~l~s~smd~~l~~~a~~ 506 (506)
T KOG0289|consen 467 -TEIKELADHSGLSTGVRFGE-HAQYLASTSMDAILRLYALT 506 (506)
T ss_pred -eeeehhhhcccccceeeecc-cceEEeeccchhheEEeecC
Confidence 44566777888899999987 77899999999999998764
No 77
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=4.8e-34 Score=223.08 Aligned_cols=251 Identities=15% Similarity=0.187 Sum_probs=217.1
Q ss_pred eeEeeecCccEEEEEEeCCCCeEEEEcCCCeEEEEECCCCCcccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEE
Q 017194 51 QLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKII 130 (375)
Q Consensus 51 ~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw 130 (375)
.+.+..|.+.|.-+.|+++|++||+++.|.+..+|++......+...++.+|..+|..+.|+||.+++++++.+..+.+|
T Consensus 217 ~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lw 296 (519)
T KOG0293|consen 217 WQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLW 296 (519)
T ss_pred hhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHheeec
Confidence 56677899999999999999999999999999999988766678888899999999999999999999999999999999
Q ss_pred eCcCceeeeeEecCcccceeEEEEeeCCCcEEEEeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEee
Q 017194 131 DIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAI 210 (375)
Q Consensus 131 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 210 (375)
|+.++.....+..++...+.+.+|.|||. .+++|+.|+++..||++ |.....++.. ....|..+++
T Consensus 297 Dv~tgd~~~~y~~~~~~S~~sc~W~pDg~-~~V~Gs~dr~i~~wdlD-gn~~~~W~gv------------r~~~v~dlai 362 (519)
T KOG0293|consen 297 DVDTGDLRHLYPSGLGFSVSSCAWCPDGF-RFVTGSPDRTIIMWDLD-GNILGNWEGV------------RDPKVHDLAI 362 (519)
T ss_pred cCCcchhhhhcccCcCCCcceeEEccCCc-eeEecCCCCcEEEecCC-cchhhccccc------------ccceeEEEEE
Confidence 99999998888755668999999999998 79999999999999987 4555555432 2356999999
Q ss_pred cCCccccCCCCEEEEEecCCcEEEEeCCCcceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCC
Q 017194 211 PDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHT 290 (375)
Q Consensus 211 ~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (375)
++ ||+++++.+.|..|++|+..+... ..+....
T Consensus 363 t~------Dgk~vl~v~~d~~i~l~~~e~~~d-----------------------------------------r~lise~ 395 (519)
T KOG0293|consen 363 TY------DGKYVLLVTVDKKIRLYNREARVD-----------------------------------------RGLISEE 395 (519)
T ss_pred cC------CCcEEEEEecccceeeechhhhhh-----------------------------------------hcccccc
Confidence 99 899999999999999999886311 1122335
Q ss_pred ccEEEEEEeecCCCCcEEEEecCCCeEEEEeCCCceeeeecchhhhhhhhcccccc--eeeeeecCCCCCcEEEeeCCCe
Q 017194 291 AAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKK--VNWLCTTPTESENLVVCDTSKV 368 (375)
Q Consensus 291 ~~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~--v~~~~~~~~~~~~l~s~~~dg~ 368 (375)
.+|++..+| .|++++++.=.+..|++||++.. .+++.+.||... +..-||-..+..++++|++|+.
T Consensus 396 ~~its~~iS---~d~k~~LvnL~~qei~LWDl~e~---------~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~k 463 (519)
T KOG0293|consen 396 QPITSFSIS---KDGKLALVNLQDQEIHLWDLEEN---------KLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSK 463 (519)
T ss_pred CceeEEEEc---CCCcEEEEEcccCeeEEeecchh---------hHHHHhhcccccceEEEeccCCCCcceEEecCCCce
Confidence 789999999 99999999999999999999987 888999998764 5556777767789999999999
Q ss_pred EEEEec
Q 017194 369 VKVYSI 374 (375)
Q Consensus 369 v~iw~~ 374 (375)
|+||+.
T Consensus 464 vyIWhr 469 (519)
T KOG0293|consen 464 VYIWHR 469 (519)
T ss_pred EEEEEc
Confidence 999985
No 78
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=100.00 E-value=1.1e-33 Score=227.06 Aligned_cols=294 Identities=14% Similarity=0.139 Sum_probs=225.7
Q ss_pred eeeecCCCceeEEEEecCCCCEEEEeCCCCcEEEEecccCce----eeEe-eecCccEEEEEEeCCCCeEEEEcCCCeEE
Q 017194 9 RRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDV----QLVT-DVGNGPVTSLCFKSGNEDIIYVSSGKEVK 83 (375)
Q Consensus 9 ~~l~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~----~~~~-~~~~~~v~~l~~~~~~~~l~~~~~d~~i~ 83 (375)
.+|++|+..|.++++.|. |-.|++|+.|.+|++||+..... .+.+ ......|.+++|++.|..|++.+.....+
T Consensus 161 i~l~hgtk~Vsal~~Dp~-GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqak 239 (641)
T KOG0772|consen 161 IQLKHGTKIVSALAVDPS-GARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQAK 239 (641)
T ss_pred EeccCCceEEEEeeecCC-CceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCccee
Confidence 468899999999999999 89999999999999999975432 2222 23467899999999999999999889999
Q ss_pred EEECCCCC---------cccccccccCCCcceeEEEEcCCC-CeEEEEeCCCcEEEEeCcCce-eeeeEec----Ccccc
Q 017194 84 SFDVHMPA---------SWRPLESYNYNKEEINQIVCNPKS-SFLACADDGGDVKIIDIRQHC-LYKSLRA----GHSSI 148 (375)
Q Consensus 84 iwd~~~~~---------~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~-~~~~~~~----~~~~~ 148 (375)
++|-.... .+.-+..-++|...+++.+|+|.. ..+++++.||++++||+...+ .++.++. +..-+
T Consensus 240 l~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~ 319 (641)
T KOG0772|consen 240 LLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVP 319 (641)
T ss_pred EEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccC
Confidence 99976322 123344556899999999999965 568899999999999998543 3344431 33457
Q ss_pred eeEEEEeeCCCcEEEEeecCCeEEEeeCCCCCc--ceEEecCCCCCCCCCCcccCC--CceeEEeecCCccccCCCCEEE
Q 017194 149 CSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRP--NKIVNFGLPENNGNAGQCYNP--AFVHAIAIPDADMLDKTNKICV 224 (375)
Q Consensus 149 v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~--~~~~~~~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~~~~~~~l~ 224 (375)
++.++|+++++ .||+|..||.|.+|+...... ...+.-. |. ..|++|.|++ +|++|+
T Consensus 320 ~tsC~~nrdg~-~iAagc~DGSIQ~W~~~~~~v~p~~~vk~A------------H~~g~~Itsi~FS~------dg~~Ll 380 (641)
T KOG0772|consen 320 VTSCAWNRDGK-LIAAGCLDGSIQIWDKGSRTVRPVMKVKDA------------HLPGQDITSISFSY------DGNYLL 380 (641)
T ss_pred ceeeecCCCcc-hhhhcccCCceeeeecCCcccccceEeeec------------cCCCCceeEEEecc------ccchhh
Confidence 89999999999 699999999999999865432 2233222 33 3899999999 899999
Q ss_pred EEecCCcEEEEeCCCcceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCC
Q 017194 225 VAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGER 304 (375)
Q Consensus 225 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 304 (375)
+-+.|+.+++||++..+....... -+. ...+-+.++|| |+
T Consensus 381 SRg~D~tLKvWDLrq~kkpL~~~t------------------------------------gL~-t~~~~tdc~FS---Pd 420 (641)
T KOG0772|consen 381 SRGFDDTLKVWDLRQFKKPLNVRT------------------------------------GLP-TPFPGTDCCFS---PD 420 (641)
T ss_pred hccCCCceeeeeccccccchhhhc------------------------------------CCC-ccCCCCccccC---CC
Confidence 999999999999997543322111 010 12344667899 99
Q ss_pred CcEEEEecC------CCeEEEEeCCCceeeeecchhhhhhhhcccccceeeeeecCCCCCcEEEeeCCCeEEEE
Q 017194 305 GKYLISGGN------DKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVY 372 (375)
Q Consensus 305 ~~~l~s~~~------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~iw 372 (375)
.++|++|.. .|.+.+||..+. ..+..+.-....|..+.|+| .-+.|+.++.||.+++|
T Consensus 421 ~kli~TGtS~~~~~~~g~L~f~d~~t~---------d~v~ki~i~~aSvv~~~Whp-kLNQi~~gsgdG~~~vy 484 (641)
T KOG0772|consen 421 DKLILTGTSAPNGMTAGTLFFFDRMTL---------DTVYKIDISTASVVRCLWHP-KLNQIFAGSGDGTAHVY 484 (641)
T ss_pred ceEEEecccccCCCCCceEEEEeccce---------eeEEEecCCCceEEEEeecc-hhhheeeecCCCceEEE
Confidence 999999864 578999999998 44444444577899999999 66678888899999986
No 79
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=6e-33 Score=219.77 Aligned_cols=300 Identities=16% Similarity=0.191 Sum_probs=235.9
Q ss_pred CeeeecCCCceeEEEEecCCCCEEEEeCCCCcEEEEecccCcee----eE-------------e-eecCccEEEEEEeCC
Q 017194 8 PRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQ----LV-------------T-DVGNGPVTSLCFKSG 69 (375)
Q Consensus 8 ~~~l~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~----~~-------------~-~~~~~~v~~l~~~~~ 69 (375)
...+..|.-+|.||+++|+ ..+.++++.+++|.=|++.+++.. .. - +.|...+.+++.++|
T Consensus 135 ~~~~~~H~~s~~~vals~d-~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~D 213 (479)
T KOG0299|consen 135 FRVIGKHQLSVTSVALSPD-DKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSD 213 (479)
T ss_pred ceeeccccCcceEEEeecc-ccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCC
Confidence 5667789999999999999 799999999999999999887632 11 1 267888999999999
Q ss_pred CCeEEEEcCCCeEEEEECCCCCcccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCceeeeeEecCcccce
Q 017194 70 NEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSIC 149 (375)
Q Consensus 70 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v 149 (375)
|++|++|+.|..|.||+.++ ...++.+.+|.+.|.+++|-.....+++++.|+.|++|+++....+.++. +|++.|
T Consensus 214 gkylatgg~d~~v~Iw~~~t---~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetly-GHqd~v 289 (479)
T KOG0299|consen 214 GKYLATGGRDRHVQIWDCDT---LEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLY-GHQDGV 289 (479)
T ss_pred CcEEEecCCCceEEEecCcc---cchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHHh-CCccce
Confidence 99999999999999999997 46666788899999999999888899999999999999999999999999 999999
Q ss_pred eEEEEeeCCCcEEEEeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecC
Q 017194 150 SSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGD 229 (375)
Q Consensus 150 ~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~d 229 (375)
.+|.-...++ .+-+|+.|+++++|++.... +.+..+ +...+-+++|- +...+++|+.+
T Consensus 290 ~~IdaL~reR-~vtVGgrDrT~rlwKi~ees--qlifrg------------~~~sidcv~~I-------n~~HfvsGSdn 347 (479)
T KOG0299|consen 290 LGIDALSRER-CVTVGGRDRTVRLWKIPEES--QLIFRG------------GEGSIDCVAFI-------NDEHFVSGSDN 347 (479)
T ss_pred eeechhcccc-eEEeccccceeEEEeccccc--eeeeeC------------CCCCeeeEEEe-------cccceeeccCC
Confidence 9998888776 56666699999999995432 222223 45789999998 58899999999
Q ss_pred CcEEEEeCCCcceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEE
Q 017194 230 GVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLI 309 (375)
Q Consensus 230 g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~ 309 (375)
|.|.+|++.+.+.++.....+.... .. ....+...|++++.. |...++|
T Consensus 348 G~IaLWs~~KKkplf~~~~AHgv~~---------------------------~~-~~~~~~~Witsla~i---~~sdL~a 396 (479)
T KOG0299|consen 348 GSIALWSLLKKKPLFTSRLAHGVIP---------------------------EL-DPVNGNFWITSLAVI---PGSDLLA 396 (479)
T ss_pred ceEEEeeecccCceeEeeccccccC---------------------------Cc-cccccccceeeeEec---ccCceEE
Confidence 9999999998765554332211100 00 111233689999999 8889999
Q ss_pred EecCCCeEEEEeCCCceeeeecchhhhhhhhcccccceeeeeecCCCCCcEEEe-eCCCeEEEE
Q 017194 310 SGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVC-DTSKVVKVY 372 (375)
Q Consensus 310 s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~-~~dg~v~iw 372 (375)
+|+.+|.|++|.+..+.... .++..+ ...+.|+.++|++ +|+.|++| +....+--|
T Consensus 397 sGS~~G~vrLW~i~~g~r~i-----~~l~~l-s~~GfVNsl~f~~-sgk~ivagiGkEhRlGRW 453 (479)
T KOG0299|consen 397 SGSWSGCVRLWKIEDGLRAI-----NLLYSL-SLVGFVNSLAFSN-SGKRIVAGIGKEHRLGRW 453 (479)
T ss_pred ecCCCCceEEEEecCCcccc-----ceeeec-ccccEEEEEEEcc-CCCEEEEeccccccccee
Confidence 99999999999999873210 222222 3678899999999 88866654 444444333
No 80
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=100.00 E-value=3.7e-33 Score=219.44 Aligned_cols=256 Identities=17% Similarity=0.226 Sum_probs=224.8
Q ss_pred CCCCCeeeecCCCceeEEEEecCCCCEEEEeCCCCcEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEEcCCCeEE
Q 017194 4 AEAKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVK 83 (375)
Q Consensus 4 ~~~~~~~l~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i~ 83 (375)
+.+.+..|+||.-.|+.+.++|+ ...+++++.|..|+||.............|..+|+.+..+|.|.||++++.|+...
T Consensus 250 s~q~l~~~~Gh~kki~~v~~~~~-~~~v~~aSad~~i~vws~~~~s~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~ 328 (506)
T KOG0289|consen 250 SNQILATLKGHTKKITSVKFHKD-LDTVITASADEIIRVWSVPLSSEPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWA 328 (506)
T ss_pred hhhhhhhccCcceEEEEEEeccc-hhheeecCCcceEEeeccccccCccccccccccceeeeeccCCcEEEEecCCceEE
Confidence 45567889999999999999999 88999999999999999988888888889999999999999999999999999999
Q ss_pred EEECCCCCcccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCceeeeeEecCcccceeEEEEeeCCCcEEE
Q 017194 84 SFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVI 163 (375)
Q Consensus 84 iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~ 163 (375)
+.|++++..+.....- ...-.+++.+|+|||..|.+|..||.|++||+.++..+..|. +|.++|..++|+.+|- .|+
T Consensus 329 Fsd~~~g~~lt~vs~~-~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~Fp-ght~~vk~i~FsENGY-~La 405 (506)
T KOG0289|consen 329 FSDISSGSQLTVVSDE-TSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKFP-GHTGPVKAISFSENGY-WLA 405 (506)
T ss_pred EEEccCCcEEEEEeec-cccceeEEeeEcCCceEEeccCCCceEEEEEcCCccccccCC-CCCCceeEEEeccCce-EEE
Confidence 9999988765444332 224568999999999999999999999999999999999999 9999999999999986 799
Q ss_pred EeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCccee
Q 017194 164 SGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNI 243 (375)
Q Consensus 164 ~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~ 243 (375)
++++|+.|++||+|..+..+++... ....+.++.|.+ .|.+|+.++.+=.|++++-.+
T Consensus 406 t~add~~V~lwDLRKl~n~kt~~l~------------~~~~v~s~~fD~------SGt~L~~~g~~l~Vy~~~k~~---- 463 (506)
T KOG0289|consen 406 TAADDGSVKLWDLRKLKNFKTIQLD------------EKKEVNSLSFDQ------SGTYLGIAGSDLQVYICKKKT---- 463 (506)
T ss_pred EEecCCeEEEEEehhhcccceeecc------------ccccceeEEEcC------CCCeEEeecceeEEEEEeccc----
Confidence 9999999999999999988888866 345699999988 799999998876666666543
Q ss_pred ecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEecCCCeEEEEeC
Q 017194 244 SRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDC 322 (375)
Q Consensus 244 ~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd~ 322 (375)
..+.++..+..|.+..+.+.|. ...+++++++.|..++++.+
T Consensus 464 ----------------------------------k~W~~~~~~~~~sg~st~v~Fg---~~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 464 ----------------------------------KSWTEIKELADHSGLSTGVRFG---EHAQYLASTSMDAILRLYAL 505 (506)
T ss_pred ----------------------------------ccceeeehhhhcccccceeeec---ccceEEeeccchhheEEeec
Confidence 3456777888888899999998 88899999999999988754
No 81
>PTZ00421 coronin; Provisional
Probab=100.00 E-value=6e-32 Score=231.56 Aligned_cols=230 Identities=15% Similarity=0.202 Sum_probs=182.5
Q ss_pred eeecCCCceeEEEEecCCCCEEEEeCCCCcEEEEecccCc-------eeeEeeecCccEEEEEEeCCC-CeEEEEcCCCe
Q 017194 10 RLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKD-------VQLVTDVGNGPVTSLCFKSGN-EDIIYVSSGKE 81 (375)
Q Consensus 10 ~l~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~-------~~~~~~~~~~~v~~l~~~~~~-~~l~~~~~d~~ 81 (375)
.+.+|.+.|++++|+|.++++|++|+.|++|++||+.++. .+..+.+|...|.+++|+|++ +.|++++.|+.
T Consensus 70 ~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~Dgt 149 (493)
T PTZ00421 70 ILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMV 149 (493)
T ss_pred eEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCE
Confidence 5889999999999999437899999999999999997652 467788999999999999985 68999999999
Q ss_pred EEEEECCCCCcccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCceeeeeEecCcccc-eeEEEEeeCCCc
Q 017194 82 VKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSI-CSSVQFIPWKPW 160 (375)
Q Consensus 82 i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~ 160 (375)
|++||+++++ .+..+..|...|.+++|+|++++|++++.|+.|++||+++++.+..+. +|... +..+.|.+++.
T Consensus 150 VrIWDl~tg~---~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~-~H~~~~~~~~~w~~~~~- 224 (493)
T PTZ00421 150 VNVWDVERGK---AVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVE-AHASAKSQRCLWAKRKD- 224 (493)
T ss_pred EEEEECCCCe---EEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEe-cCCCCcceEEEEcCCCC-
Confidence 9999999764 344556788999999999999999999999999999999999988888 88764 45678888877
Q ss_pred EEEEee----cCCeEEEeeCCCCCc-ceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEe-cCCcEEE
Q 017194 161 EVISGG----LDSKLVMWDFSKGRP-NKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAK-GDGVVDV 234 (375)
Q Consensus 161 ~l~~~~----~d~~i~~wd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~-~dg~i~i 234 (375)
.+++++ .|+.|++||+++... +...... ....+....|++ ++++|++++ .|+.|++
T Consensus 225 ~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d------------~~~~~~~~~~d~------d~~~L~lggkgDg~Iri 286 (493)
T PTZ00421 225 LIITLGCSKSQQRQIMLWDTRKMASPYSTVDLD------------QSSALFIPFFDE------DTNLLYIGSKGEGNIRC 286 (493)
T ss_pred eEEEEecCCCCCCeEEEEeCCCCCCceeEeccC------------CCCceEEEEEcC------CCCEEEEEEeCCCeEEE
Confidence 465543 479999999987543 3333222 123455566777 788888887 5999999
Q ss_pred EeCCCcceeecccccCCCCCCceeeccc
Q 017194 235 INIESELNISRSKSTTKPLKGSQSTSKV 262 (375)
Q Consensus 235 ~d~~~~~~~~~~~~~~~~~~~~~~~s~~ 262 (375)
||+.++............+...+++.|.
T Consensus 287 wdl~~~~~~~~~~~~s~~~~~g~~~~pk 314 (493)
T PTZ00421 287 FELMNERLTFCSSYSSVEPHKGLCMMPK 314 (493)
T ss_pred EEeeCCceEEEeeccCCCCCcceEeccc
Confidence 9999877655444434445556666654
No 82
>PTZ00420 coronin; Provisional
Probab=100.00 E-value=8.7e-32 Score=231.56 Aligned_cols=252 Identities=12% Similarity=0.039 Sum_probs=191.0
Q ss_pred eCCCCcEEEEecccCceeeEeeecCccEEEEEEeCC-CCeEEEEcCCCeEEEEECCCCCc-c----cccccccCCCccee
Q 017194 34 SGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSG-NEDIIYVSSGKEVKSFDVHMPAS-W----RPLESYNYNKEEIN 107 (375)
Q Consensus 34 ~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~-~~~l~~~~~d~~i~iwd~~~~~~-~----~~~~~~~~~~~~v~ 107 (375)
|+.++.|++|+......+..+.+|...|.+++|+|+ +++|++|+.|++|++||+.++.. . ..+..+.+|...|.
T Consensus 50 GG~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~ 129 (568)
T PTZ00420 50 GGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKIS 129 (568)
T ss_pred CCceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEE
Confidence 567889999998887788889999999999999997 78999999999999999976432 1 23345678899999
Q ss_pred EEEEcCCCCe-EEEEeCCCcEEEEeCcCceeeeeEecCcccceeEEEEeeCCCcEEEEeecCCeEEEeeCCCCCcceEEe
Q 017194 108 QIVCNPKSSF-LACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVN 186 (375)
Q Consensus 108 ~~~~~~~~~~-l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~ 186 (375)
+++|+|++.. |++++.|+.|++||+++++.+..+. |...|.+++|+|+|. +|++++.|+.|++||+++++.+..+.
T Consensus 130 sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~--~~~~V~SlswspdG~-lLat~s~D~~IrIwD~Rsg~~i~tl~ 206 (568)
T PTZ00420 130 IIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN--MPKKLSSLKWNIKGN-LLSGTCVGKHMHIIDPRKQEIASSFH 206 (568)
T ss_pred EEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe--cCCcEEEEEECCCCC-EEEEEecCCEEEEEECCCCcEEEEEe
Confidence 9999998876 5688999999999999998877776 567899999999998 78999999999999999998887776
Q ss_pred cCCCCCCCCCCcccCCCceeE-----EeecCCccccCCCCEEEEEecCC----cEEEEeCCCcceeecccccCCCCCCce
Q 017194 187 FGLPENNGNAGQCYNPAFVHA-----IAIPDADMLDKTNKICVVAKGDG----VVDVINIESELNISRSKSTTKPLKGSQ 257 (375)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~v~~-----~~~~~~~~~~~~~~~l~~~~~dg----~i~i~d~~~~~~~~~~~~~~~~~~~~~ 257 (375)
.+ ...+.. ..|++ ++.++++++.++ .|++||++....+
T Consensus 207 gH-------------~g~~~s~~v~~~~fs~------d~~~IlTtG~d~~~~R~VkLWDlr~~~~p-------------- 253 (568)
T PTZ00420 207 IH-------------DGGKNTKNIWIDGLGG------DDNYILSTGFSKNNMREMKLWDLKNTTSA-------------- 253 (568)
T ss_pred cc-------------cCCceeEEEEeeeEcC------CCCEEEEEEcCCCCccEEEEEECCCCCCc--------------
Confidence 33 333322 23445 688888877664 7999999952111
Q ss_pred eecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEecCCCeEEEEeCCCceeeeecchhhhh
Q 017194 258 STSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLL 337 (375)
Q Consensus 258 ~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~ 337 (375)
.....+..+...+...... ++|.++++|+.|+.|++|++..+.. ..+
T Consensus 254 -----------------------l~~~~ld~~~~~L~p~~D~---~tg~l~lsGkGD~tIr~~e~~~~~~-------~~l 300 (568)
T PTZ00420 254 -----------------------LVTMSIDNASAPLIPHYDE---STGLIYLIGKGDGNCRYYQHSLGSI-------RKV 300 (568)
T ss_pred -----------------------eEEEEecCCccceEEeeeC---CCCCEEEEEECCCeEEEEEccCCcE-------Eee
Confidence 1111233333333333333 6789999999999999999987632 122
Q ss_pred hhhcccccceeeeeecCC
Q 017194 338 IKNINLNKKVNWLCTTPT 355 (375)
Q Consensus 338 ~~~~~~~~~v~~~~~~~~ 355 (375)
.. ..+..++.+++|.|.
T Consensus 301 ~~-~~s~~p~~g~~f~Pk 317 (568)
T PTZ00420 301 NE-YKSCSPFRSFGFLPK 317 (568)
T ss_pred cc-cccCCCccceEEccc
Confidence 22 225677788888883
No 83
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2e-32 Score=206.84 Aligned_cols=243 Identities=19% Similarity=0.292 Sum_probs=203.9
Q ss_pred eeEeeecCccEEEEEEeCCCCeEEEEcCCCeEEEEECCCCCcccccccccCCCcceeEEEEcCCCC--eEEEEeCCCcEE
Q 017194 51 QLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSS--FLACADDGGDVK 128 (375)
Q Consensus 51 ~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~dg~i~ 128 (375)
+..+..|..+|++++.+ +.++++|+.|-+|+|||++... .+..+-.|.+.|+++.|.+.-. .|++|+.||.|.
T Consensus 36 lF~~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~~---qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~ 110 (362)
T KOG0294|consen 36 LFAFSAHAGSITALAVS--GPYVASGSSDETIHIYDMRKRK---QLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHII 110 (362)
T ss_pred cccccccccceeEEEec--ceeEeccCCCCcEEEEeccchh---hhcceeccccceEEEEecCCcchhheeeecCCCcEE
Confidence 55667899999999986 7899999999999999998643 4445555789999999999764 899999999999
Q ss_pred EEeCcCceeeeeEecCcccceeEEEEeeCCCcEEEEeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEE
Q 017194 129 IIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAI 208 (375)
Q Consensus 129 iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 208 (375)
+|+...-+.+..++ +|.+.|+.++.+|.++ +.++.+.|+.++.||+-.|+.-....+. ...+.+
T Consensus 111 iw~~~~W~~~~slK-~H~~~Vt~lsiHPS~K-LALsVg~D~~lr~WNLV~Gr~a~v~~L~--------------~~at~v 174 (362)
T KOG0294|consen 111 IWRVGSWELLKSLK-AHKGQVTDLSIHPSGK-LALSVGGDQVLRTWNLVRGRVAFVLNLK--------------NKATLV 174 (362)
T ss_pred EEEcCCeEEeeeec-ccccccceeEecCCCc-eEEEEcCCceeeeehhhcCccceeeccC--------------Ccceee
Confidence 99999999999999 9999999999999998 7889999999999999999888777765 344569
Q ss_pred eecCCccccCCCCEEEEEecCCcEEEEeCCCcceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecC
Q 017194 209 AIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGG 288 (375)
Q Consensus 209 ~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (375)
.|+| .|.+++++..+ .|-+|.+.+... ...+.
T Consensus 175 ~w~~------~Gd~F~v~~~~-~i~i~q~d~A~v----------------------------------------~~~i~- 206 (362)
T KOG0294|consen 175 SWSP------QGDHFVVSGRN-KIDIYQLDNASV----------------------------------------FREIE- 206 (362)
T ss_pred EEcC------CCCEEEEEecc-EEEEEecccHhH----------------------------------------hhhhh-
Confidence 9998 79988888776 688998886321 11111
Q ss_pred CCccEEEEEEeecCCCCcEEEEecCCCeEEEEeCCCceeeeecchhhhhhhhcccccceeeeeec-CCCCCcEEEeeCCC
Q 017194 289 HTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTT-PTESENLVVCDTSK 367 (375)
Q Consensus 289 ~~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~l~s~~~dg 367 (375)
....+.++.|- ++.+|++|++|+.|.+||..+. .++..+.+|..+|-++.+. .+++.+|+|++.||
T Consensus 207 ~~~r~l~~~~l----~~~~L~vG~d~~~i~~~D~ds~---------~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG 273 (362)
T KOG0294|consen 207 NPKRILCATFL----DGSELLVGGDNEWISLKDTDSD---------TPLTEFLAHENRVKDIASYTNPEHEYLVTASSDG 273 (362)
T ss_pred ccccceeeeec----CCceEEEecCCceEEEeccCCC---------ccceeeecchhheeeeEEEecCCceEEEEeccCc
Confidence 12446677774 7889999999999999999986 7778899999999999843 34788999999999
Q ss_pred eEEEEecC
Q 017194 368 VVKVYSIS 375 (375)
Q Consensus 368 ~v~iw~~~ 375 (375)
.|++||++
T Consensus 274 ~I~vWd~~ 281 (362)
T KOG0294|consen 274 FIKVWDID 281 (362)
T ss_pred eEEEEEcc
Confidence 99999974
No 84
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=100.00 E-value=4.4e-33 Score=220.26 Aligned_cols=264 Identities=17% Similarity=0.297 Sum_probs=215.8
Q ss_pred cCCCceeEEEEecCCCCEEEEeCCCCcEEEEecccCc----------eeeEeeecCccEEEEEEeCCCC-eEEEEcCCCe
Q 017194 13 GHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKD----------VQLVTDVGNGPVTSLCFKSGNE-DIIYVSSGKE 81 (375)
Q Consensus 13 ~h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~----------~~~~~~~~~~~v~~l~~~~~~~-~l~~~~~d~~ 81 (375)
-|.+.|+.+.+-|.+..++|+++..+.|.|||..+-. +...+.+|...-++|+|++... +|++++.|++
T Consensus 122 ~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~ 201 (422)
T KOG0264|consen 122 NHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHT 201 (422)
T ss_pred cCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCCc
Confidence 4999999999999988899999999999999986432 2337788988888999998543 6889999999
Q ss_pred EEEEECCCCCc----ccccccccCCCcceeEEEEcC-CCCeEEEEeCCCcEEEEeCc--CceeeeeEecCcccceeEEEE
Q 017194 82 VKSFDVHMPAS----WRPLESYNYNKEEINQIVCNP-KSSFLACADDGGDVKIIDIR--QHCLYKSLRAGHSSICSSVQF 154 (375)
Q Consensus 82 i~iwd~~~~~~----~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~--~~~~~~~~~~~~~~~v~~~~~ 154 (375)
|++||+..... ..+...+.+|...|..++|++ +..++++++.|+.+.|||++ +.+...... +|.+.|++++|
T Consensus 202 i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~-ah~~~vn~~~f 280 (422)
T KOG0264|consen 202 ICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVK-AHSAEVNCVAF 280 (422)
T ss_pred EEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCccccc-ccCCceeEEEe
Confidence 99999975433 556677889999999999999 45678899999999999999 556666777 99999999999
Q ss_pred eeCCCcEEEEeecCCeEEEeeCCCCC-cceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEE
Q 017194 155 IPWKPWEVISGGLDSKLVMWDFSKGR-PNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVD 233 (375)
Q Consensus 155 ~~~~~~~l~~~~~d~~i~~wd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~ 233 (375)
+|.+.++||+|+.|++|.+||+|+.+ ++..+. + |...|..|.|+|. ....|++++.|+.+.
T Consensus 281 np~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e-~------------H~dev~~V~WSPh-----~etvLASSg~D~rl~ 342 (422)
T KOG0264|consen 281 NPFNEFILATGSADKTVALWDLRNLNKPLHTFE-G------------HEDEVFQVEWSPH-----NETVLASSGTDRRLN 342 (422)
T ss_pred CCCCCceEEeccCCCcEEEeechhcccCceecc-C------------CCcceEEEEeCCC-----CCceeEecccCCcEE
Confidence 99998899999999999999999754 445554 3 6789999999996 788999999999999
Q ss_pred EEeCCCcceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCC-cEEEEec
Q 017194 234 VINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERG-KYLISGG 312 (375)
Q Consensus 234 i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~-~~l~s~~ 312 (375)
+||+..-....... ........+++.-.||...|..+.|+ |.. -.|++.+
T Consensus 343 vWDls~ig~eq~~e--------------------------da~dgppEllF~HgGH~~kV~DfsWn---p~ePW~I~Sva 393 (422)
T KOG0264|consen 343 VWDLSRIGEEQSPE--------------------------DAEDGPPELLFIHGGHTAKVSDFSWN---PNEPWTIASVA 393 (422)
T ss_pred EEeccccccccChh--------------------------hhccCCcceeEEecCcccccccccCC---CCCCeEEEEec
Confidence 99998632221100 00122335667888999999999999 444 4677899
Q ss_pred CCCeEEEEeCCC
Q 017194 313 NDKLVKVWDCSR 324 (375)
Q Consensus 313 ~dg~i~iwd~~~ 324 (375)
+|+.+.||.+..
T Consensus 394 eDN~LqIW~~s~ 405 (422)
T KOG0264|consen 394 EDNILQIWQMAE 405 (422)
T ss_pred CCceEEEeeccc
Confidence 999999999875
No 85
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=100.00 E-value=2.3e-33 Score=221.91 Aligned_cols=260 Identities=21% Similarity=0.256 Sum_probs=212.6
Q ss_pred ecCccEEEEEEeCCCCeEE-EEcCCCeEEEEECCCCCcccc-------cccccCCCcceeEEEEcCC-CCeEEEEeCCCc
Q 017194 56 VGNGPVTSLCFKSGNEDII-YVSSGKEVKSFDVHMPASWRP-------LESYNYNKEEINQIVCNPK-SSFLACADDGGD 126 (375)
Q Consensus 56 ~~~~~v~~l~~~~~~~~l~-~~~~d~~i~iwd~~~~~~~~~-------~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~ 126 (375)
.|.+.|+.+.+-|+...|+ +.+..+.+.|||..+...... -..+.+|...-.+++|++. .-.+++++.|+.
T Consensus 122 ~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~ 201 (422)
T KOG0264|consen 122 NHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHT 201 (422)
T ss_pred cCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCCc
Confidence 4889999999999876655 456678999999875332222 2256778887888999995 346999999999
Q ss_pred EEEEeCcCc-------eeeeeEecCcccceeEEEEeeCCCcEEEEeecCCeEEEeeCCC--CCcceEEecCCCCCCCCCC
Q 017194 127 VKIIDIRQH-------CLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSK--GRPNKIVNFGLPENNGNAG 197 (375)
Q Consensus 127 i~iwd~~~~-------~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~--~~~~~~~~~~~~~~~~~~~ 197 (375)
|++||+... .....+. +|...|..++|++....+|++++.|+.+.|||+|+ .++..... .
T Consensus 202 i~lwdi~~~~~~~~~~~p~~~~~-~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~-a--------- 270 (422)
T KOG0264|consen 202 ICLWDINAESKEDKVVDPKTIFS-GHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVK-A--------- 270 (422)
T ss_pred EEEEeccccccCCccccceEEee-cCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCccccc-c---------
Confidence 999999743 2345567 99999999999998887999999999999999995 33333333 2
Q ss_pred cccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCcceeecccccCCCCCCceeecccccceeeeeeeecCCc
Q 017194 198 QCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGG 277 (375)
Q Consensus 198 ~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~ 277 (375)
|...+++++|+|. ++.+||+|+.|++|.+||+++..
T Consensus 271 ---h~~~vn~~~fnp~-----~~~ilAT~S~D~tV~LwDlRnL~------------------------------------ 306 (422)
T KOG0264|consen 271 ---HSAEVNCVAFNPF-----NEFILATGSADKTVALWDLRNLN------------------------------------ 306 (422)
T ss_pred ---cCCceeEEEeCCC-----CCceEEeccCCCcEEEeechhcc------------------------------------
Confidence 5789999999997 78999999999999999999742
Q ss_pred ceeEeeeeecCCCccEEEEEEeecCCCCcEEEEecCCCeEEEEeCCCceeee-----ecchhhhhhhhcccccceeeeee
Q 017194 278 KRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQ-----TSINNDLLIKNINLNKKVNWLCT 352 (375)
Q Consensus 278 ~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~-----~~~~~~~~~~~~~~~~~v~~~~~ 352 (375)
+.+.++.+|...|.++.||| .....||+++.|+.+.|||+..-...+ ...+.+++....||...|..+.|
T Consensus 307 ---~~lh~~e~H~dev~~V~WSP--h~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsW 381 (422)
T KOG0264|consen 307 ---KPLHTFEGHEDEVFQVEWSP--HNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSW 381 (422)
T ss_pred ---cCceeccCCCcceEEEEeCC--CCCceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccC
Confidence 35678999999999999996 456789999999999999998754432 33456777788899999999999
Q ss_pred cCCCCCcEEEeeCCCeEEEEecC
Q 017194 353 TPTESENLVVCDTSKVVKVYSIS 375 (375)
Q Consensus 353 ~~~~~~~l~s~~~dg~v~iw~~~ 375 (375)
+|.+...|+|.+.|+.+.||++.
T Consensus 382 np~ePW~I~SvaeDN~LqIW~~s 404 (422)
T KOG0264|consen 382 NPNEPWTIASVAEDNILQIWQMA 404 (422)
T ss_pred CCCCCeEEEEecCCceEEEeecc
Confidence 99888899999999999999863
No 86
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=2.2e-32 Score=205.47 Aligned_cols=278 Identities=12% Similarity=0.152 Sum_probs=218.4
Q ss_pred CCCceeEEEEecCCCCEEEEeCCCCcEEEEecccC-ce-eeEeeecCccEEEEEEeCCCCeEEEEcCCCeEEEEECCCCC
Q 017194 14 HKATATCCIASRDRPGFVASSGEDGCICWFDLRSK-DV-QLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPA 91 (375)
Q Consensus 14 h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~-~~-~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i~iwd~~~~~ 91 (375)
-++.|.+++|||....+++.++-||+||+|+++.. .. -+....|.++|.+++|+.+|..+++|+.|+.+++||+.+++
T Consensus 26 P~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q 105 (347)
T KOG0647|consen 26 PEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQ 105 (347)
T ss_pred cccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCCC
Confidence 56789999999964677889999999999999863 33 34455689999999999999999999999999999999763
Q ss_pred cccccccccCCCcceeEEEEcCCCC--eEEEEeCCCcEEEEeCcCceeeeeEecCcccceeEEEEeeCCCcEEEEeecCC
Q 017194 92 SWRPLESYNYNKEEINQIVCNPKSS--FLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDS 169 (375)
Q Consensus 92 ~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~ 169 (375)
......|.++|.++.|-+... .|++|+.|.+|+.||.+...++.++. ....+.++..-.. +++++..+.
T Consensus 106 ----~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~--LPeRvYa~Dv~~p---m~vVata~r 176 (347)
T KOG0647|consen 106 ----VSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQ--LPERVYAADVLYP---MAVVATAER 176 (347)
T ss_pred ----eeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeee--ccceeeehhccCc---eeEEEecCC
Confidence 334455799999999988655 79999999999999999999988887 5667777765433 789999999
Q ss_pred eEEEeeCCCCCcc-eEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCcceeecccc
Q 017194 170 KLVMWDFSKGRPN-KIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKS 248 (375)
Q Consensus 170 ~i~~wd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~ 248 (375)
.|.+|+++.+... +.++.. ....+++|+..+ +....+.|+-+|.+.+..+..+....
T Consensus 177 ~i~vynL~n~~te~k~~~Sp------------Lk~Q~R~va~f~------d~~~~alGsiEGrv~iq~id~~~~~~---- 234 (347)
T KOG0647|consen 177 HIAVYNLENPPTEFKRIESP------------LKWQTRCVACFQ------DKDGFALGSIEGRVAIQYIDDPNPKD---- 234 (347)
T ss_pred cEEEEEcCCCcchhhhhcCc------------ccceeeEEEEEe------cCCceEeeeecceEEEEecCCCCccC----
Confidence 9999999765332 222212 245789999988 67777999999999999888642110
Q ss_pred cCCCCCCceeecccccceeeeeeeecCCcceeEeeeee---cCCCccEEEEEEeecCCCCcEEEEecCCCeEEEEeCCCc
Q 017194 249 TTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSV---GGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRF 325 (375)
Q Consensus 249 ~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd~~~~ 325 (375)
.-.+++-+.- .+.-..|++++|+ |.-..|+|++.||++.+||-+..
T Consensus 235 ----------------------------nFtFkCHR~~~~~~~~VYaVNsi~Fh---P~hgtlvTaGsDGtf~FWDkdar 283 (347)
T KOG0647|consen 235 ----------------------------NFTFKCHRSTNSVNDDVYAVNSIAFH---PVHGTLVTAGSDGTFSFWDKDAR 283 (347)
T ss_pred ----------------------------ceeEEEeccCCCCCCceEEecceEee---cccceEEEecCCceEEEecchhh
Confidence 1112222211 1113468889999 77789999999999999999887
Q ss_pred eeeeecchhhhhhhhcccccceeeeeecCCCCCcEEEe
Q 017194 326 QGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVC 363 (375)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~ 363 (375)
..++....|..+|++.+|+. +|.++|-+
T Consensus 284 ---------~kLk~s~~~~qpItcc~fn~-~G~ifaYA 311 (347)
T KOG0647|consen 284 ---------TKLKTSETHPQPITCCSFNR-NGSIFAYA 311 (347)
T ss_pred ---------hhhhccCcCCCccceeEecC-CCCEEEEE
Confidence 56677888999999999998 88887754
No 87
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.4e-32 Score=203.87 Aligned_cols=253 Identities=15% Similarity=0.191 Sum_probs=205.5
Q ss_pred ceeeEeeecCccEEEEEEeCCCCeEEEEcCCCeEEEEECCCCCcccccccccCCCcceeEEEEcCCCCeEEEEeC--CCc
Q 017194 49 DVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADD--GGD 126 (375)
Q Consensus 49 ~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--dg~ 126 (375)
++.+.+......|.++.|+++|.++++++.|.++++||..+++..+.+.. ++..+..++|....+.++.++. |.+
T Consensus 5 ~~ak~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~s---kkyG~~~~~Fth~~~~~i~sStk~d~t 81 (311)
T KOG1446|consen 5 RPAKVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINS---KKYGVDLACFTHHSNTVIHSSTKEDDT 81 (311)
T ss_pred ccccccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeec---ccccccEEEEecCCceEEEccCCCCCc
Confidence 34455665678999999999999999999999999999998776665554 3678888999887777777765 889
Q ss_pred EEEEeCcCceeeeeEecCcccceeEEEEeeCCCcEEEEeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCcee
Q 017194 127 VKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVH 206 (375)
Q Consensus 127 i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 206 (375)
|+..++.+.+.++.|. ||...|++++.+|-++ .+++++.|++|++||++..++...+... .-.
T Consensus 82 IryLsl~dNkylRYF~-GH~~~V~sL~~sP~~d-~FlS~S~D~tvrLWDlR~~~cqg~l~~~---------------~~p 144 (311)
T KOG1446|consen 82 IRYLSLHDNKYLRYFP-GHKKRVNSLSVSPKDD-TFLSSSLDKTVRLWDLRVKKCQGLLNLS---------------GRP 144 (311)
T ss_pred eEEEEeecCceEEEcC-CCCceEEEEEecCCCC-eEEecccCCeEEeeEecCCCCceEEecC---------------CCc
Confidence 9999999999999999 9999999999999998 8999999999999999988888777643 335
Q ss_pred EEeecCCccccCCCCEEEEEecCCcEEEEeCCCcceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeee
Q 017194 207 AIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSV 286 (375)
Q Consensus 207 ~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~ 286 (375)
..+|.| +|-++|++...+.|++||++....- ........
T Consensus 145 i~AfDp------~GLifA~~~~~~~IkLyD~Rs~dkg-----------------------------------PF~tf~i~ 183 (311)
T KOG1446|consen 145 IAAFDP------EGLIFALANGSELIKLYDLRSFDKG-----------------------------------PFTTFSIT 183 (311)
T ss_pred ceeECC------CCcEEEEecCCCeEEEEEecccCCC-----------------------------------CceeEccC
Confidence 678888 7999999998889999999963110 01111111
Q ss_pred cCCCccEEEEEEeecCCCCcEEEEecCCCeEEEEeCCCceeeeecchhhhhhhhcccccc---eeeeeecCCCCCcEEEe
Q 017194 287 GGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKK---VNWLCTTPTESENLVVC 363 (375)
Q Consensus 287 ~~~~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~---v~~~~~~~~~~~~l~s~ 363 (375)
.+.....+.+.|| |||++|+.+...+.+++.|.-++. +...+..+... -...+|+| |++++++|
T Consensus 184 ~~~~~ew~~l~FS---~dGK~iLlsT~~s~~~~lDAf~G~---------~~~tfs~~~~~~~~~~~a~ftP-ds~Fvl~g 250 (311)
T KOG1446|consen 184 DNDEAEWTDLEFS---PDGKSILLSTNASFIYLLDAFDGT---------VKSTFSGYPNAGNLPLSATFTP-DSKFVLSG 250 (311)
T ss_pred CCCccceeeeEEc---CCCCEEEEEeCCCcEEEEEccCCc---------EeeeEeeccCCCCcceeEEECC-CCcEEEEe
Confidence 1446778999999 999999999999999999999984 34444444332 25677888 99999999
Q ss_pred eCCCeEEEEecC
Q 017194 364 DTSKVVKVYSIS 375 (375)
Q Consensus 364 ~~dg~v~iw~~~ 375 (375)
+.||+|.+|+++
T Consensus 251 s~dg~i~vw~~~ 262 (311)
T KOG1446|consen 251 SDDGTIHVWNLE 262 (311)
T ss_pred cCCCcEEEEEcC
Confidence 999999999974
No 88
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=100.00 E-value=2.6e-32 Score=234.04 Aligned_cols=246 Identities=19% Similarity=0.233 Sum_probs=211.5
Q ss_pred CCCCCee-eecCCCceeEEEEecCCCCEEEEeCCCCcEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEEcCCCeE
Q 017194 4 AEAKPRR-LRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEV 82 (375)
Q Consensus 4 ~~~~~~~-l~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i 82 (375)
++..+.. +.||.+.|.++++..- +.+|++|+.|.++++||..+|++...+.+|...|.++...+ ..+++|+.|.+|
T Consensus 237 ~~~~i~~~l~GH~g~V~~l~~~~~-~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~stv~~~~~~~--~~~~sgs~D~tV 313 (537)
T KOG0274|consen 237 NGYLILTRLVGHFGGVWGLAFPSG-GDKLVSGSTDKTERVWDCSTGECTHSLQGHTSSVRCLTIDP--FLLVSGSRDNTV 313 (537)
T ss_pred cceEEEeeccCCCCCceeEEEecC-CCEEEEEecCCcEEeEecCCCcEEEEecCCCceEEEEEccC--ceEeeccCCceE
Confidence 3445555 9999999999999874 78999999999999999999999999999999999988754 568888999999
Q ss_pred EEEECCCCCcccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCceeeeeEecCcccceeEEEEeeCCCcEE
Q 017194 83 KSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEV 162 (375)
Q Consensus 83 ~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l 162 (375)
++|++.++..+ ..+.+|..+|.++..+ +.++++|+.|++|++||+.+++++..+. +|...|.++.+.+. + .+
T Consensus 314 kVW~v~n~~~l---~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~~~cl~sl~-gH~~~V~sl~~~~~-~-~~ 385 (537)
T KOG0274|consen 314 KVWDVTNGACL---NLLRGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPRTGKCLKSLS-GHTGRVYSLIVDSE-N-RL 385 (537)
T ss_pred EEEeccCcceE---EEeccccccEEEEEec--CCEEEEEecCceEEEEEhhhceeeeeec-CCcceEEEEEecCc-c-eE
Confidence 99999976544 4444589999999997 7799999999999999999999999999 99999999988775 4 79
Q ss_pred EEeecCCeEEEeeCCCC-CcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCcc
Q 017194 163 ISGGLDSKLVMWDFSKG-RPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESEL 241 (375)
Q Consensus 163 ~~~~~d~~i~~wd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~ 241 (375)
++|+.|++|++||+++. +++..+.. |...+..+.+ .++.|++++.|+.|++||..++
T Consensus 386 ~Sgs~D~~IkvWdl~~~~~c~~tl~~-------------h~~~v~~l~~--------~~~~Lvs~~aD~~Ik~WD~~~~- 443 (537)
T KOG0274|consen 386 LSGSLDTTIKVWDLRTKRKCIHTLQG-------------HTSLVSSLLL--------RDNFLVSSSADGTIKLWDAEEG- 443 (537)
T ss_pred EeeeeccceEeecCCchhhhhhhhcC-------------Cccccccccc--------ccceeEeccccccEEEeecccC-
Confidence 99999999999999999 88888873 3566666666 5899999999999999999975
Q ss_pred eeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecC-CCccEEEEEEeecCCCCcEEEEecCCCeEEEE
Q 017194 242 NISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGG-HTAAASCVAFSMFGERGKYLISGGNDKLVKVW 320 (375)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iw 320 (375)
+++..+.+ |...|..+++. ...+++++.||.+++|
T Consensus 444 ---------------------------------------~~~~~~~~~~~~~v~~l~~~-----~~~il~s~~~~~~~l~ 479 (537)
T KOG0274|consen 444 ---------------------------------------ECLRTLEGRHVGGVSALALG-----KEEILCSSDDGSVKLW 479 (537)
T ss_pred ---------------------------------------ceeeeeccCCcccEEEeecC-----cceEEEEecCCeeEEE
Confidence 44556666 66788888763 3578899999999999
Q ss_pred eCCCce
Q 017194 321 DCSRFQ 326 (375)
Q Consensus 321 d~~~~~ 326 (375)
|+++++
T Consensus 480 dl~~~~ 485 (537)
T KOG0274|consen 480 DLRSGT 485 (537)
T ss_pred ecccCc
Confidence 999984
No 89
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=100.00 E-value=4.3e-33 Score=223.27 Aligned_cols=282 Identities=17% Similarity=0.298 Sum_probs=236.4
Q ss_pred cCCCceeEEEEecCCCCEEEEeCCCCcEEEEecccCc---eeeEeee--cCccEEEEEEeCCCCeEEEEcCCCeEEEEEC
Q 017194 13 GHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKD---VQLVTDV--GNGPVTSLCFKSGNEDIIYVSSGKEVKSFDV 87 (375)
Q Consensus 13 ~h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~---~~~~~~~--~~~~v~~l~~~~~~~~l~~~~~d~~i~iwd~ 87 (375)
.|.+-|.++..+.. .+.+.||+. |.|+|||+.... ++..+.. ....|.++.+.|||+.|++|+.-.++.|||+
T Consensus 417 ~HGEvVcAvtIS~~-trhVyTgGk-gcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWDL 494 (705)
T KOG0639|consen 417 AHGEVVCAVTISNP-TRHVYTGGK-GCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDL 494 (705)
T ss_pred ccCcEEEEEEecCC-cceeEecCC-CeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceeeeeec
Confidence 38788888888887 789999997 679999986432 2333332 4678999999999999999999999999999
Q ss_pred CCCCcccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCceeeeeEecCcccceeEEEEeeCCCcEEEEeec
Q 017194 88 HMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGL 167 (375)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~ 167 (375)
..... ..-..+....-....++.+||.+..++++.||.|.|||+++...++.|+ +|.+.+.||..+++|. .|.+|+-
T Consensus 495 AapTp-rikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~Vrqfq-GhtDGascIdis~dGt-klWTGGl 571 (705)
T KOG0639|consen 495 AAPTP-RIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQ-GHTDGASCIDISKDGT-KLWTGGL 571 (705)
T ss_pred cCCCc-chhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeeccc-CCCCCceeEEecCCCc-eeecCCC
Confidence 86432 2222222223457789999999999999999999999999999999999 9999999999999998 6999999
Q ss_pred CCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCcceeeccc
Q 017194 168 DSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSK 247 (375)
Q Consensus 168 d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 247 (375)
|.+|+.||+++++.+....+. ..|.++..+| ++.+|++|-.++.+.+......
T Consensus 572 DntvRcWDlregrqlqqhdF~--------------SQIfSLg~cP------~~dWlavGMens~vevlh~skp------- 624 (705)
T KOG0639|consen 572 DNTVRCWDLREGRQLQQHDFS--------------SQIFSLGYCP------TGDWLAVGMENSNVEVLHTSKP------- 624 (705)
T ss_pred ccceeehhhhhhhhhhhhhhh--------------hhheecccCC------CccceeeecccCcEEEEecCCc-------
Confidence 999999999999988887754 7899999999 7999999999999988877752
Q ss_pred ccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEecCCCeEEEEeCCCcee
Q 017194 248 STTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQG 327 (375)
Q Consensus 248 ~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd~~~~~~ 327 (375)
..+.+.-|..-|.++.|. +-|+++++.+.|+.+..|...-+..
T Consensus 625 ----------------------------------~kyqlhlheScVLSlKFa---~cGkwfvStGkDnlLnawrtPyGas 667 (705)
T KOG0639|consen 625 ----------------------------------EKYQLHLHESCVLSLKFA---YCGKWFVSTGKDNLLNAWRTPYGAS 667 (705)
T ss_pred ----------------------------------cceeecccccEEEEEEec---ccCceeeecCchhhhhhccCccccc
Confidence 334677889999999999 8999999999999999999988742
Q ss_pred eeecchhhhhhhhcccccceeeeeecCCCCCcEEEeeCCCeEEEEec
Q 017194 328 VQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSI 374 (375)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~iw~~ 374 (375)
+ ........|.++.++. |.+||+||+.|....||.+
T Consensus 668 i----------FqskE~SsVlsCDIS~-ddkyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 668 I----------FQSKESSSVLSCDISF-DDKYIVTGSGDKKATVYEV 703 (705)
T ss_pred e----------eeccccCcceeeeecc-CceEEEecCCCcceEEEEE
Confidence 2 2223457899999998 8899999999998888876
No 90
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=3.7e-33 Score=229.95 Aligned_cols=287 Identities=15% Similarity=0.167 Sum_probs=233.4
Q ss_pred CCCcee---EEEEecCCCCEEEEeCCCCcEEEEecccCc------eeeEeeecCccEEEEEEeCCCCeEEEEcCCCeEEE
Q 017194 14 HKATAT---CCIASRDRPGFVASSGEDGCICWFDLRSKD------VQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKS 84 (375)
Q Consensus 14 h~~~i~---~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~------~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i~i 84 (375)
|...|. .+..+..++++|+|||.||.|++|+...-. .+..++.|.+.|+.+....+++.|++++.|-+|++
T Consensus 20 n~~~v~~~~~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~ 99 (735)
T KOG0308|consen 20 NRNGVNITKALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKV 99 (735)
T ss_pred ccccccchhhccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEE
Confidence 555666 566666668899999999999999986432 36778899999999999999999999999999999
Q ss_pred EECCCCCcccccccccCCCcceeEEEE-cCCCCeEEEEeCCCcEEEEeCcCc--eeeeeE--------ecCcccceeEEE
Q 017194 85 FDVHMPASWRPLESYNYNKEEINQIVC-NPKSSFLACADDGGDVKIIDIRQH--CLYKSL--------RAGHSSICSSVQ 153 (375)
Q Consensus 85 wd~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~l~~~~~dg~i~iwd~~~~--~~~~~~--------~~~~~~~v~~~~ 153 (375)
|+...+. .-....+..|...|.|+++ .++...+|+|+-|+.|.+||+.++ +.+..+ ..++...|.+++
T Consensus 100 W~~~~~~-~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA 178 (735)
T KOG0308|consen 100 WNAHKDN-TFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLA 178 (735)
T ss_pred eecccCc-chhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeee
Confidence 9998653 3456667778999999999 778889999999999999999977 233322 126788999999
Q ss_pred EeeCCCcEEEEeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEE
Q 017194 154 FIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVD 233 (375)
Q Consensus 154 ~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~ 233 (375)
.++.|. ++++|+..+.+++||.++.+.+..+. + |...|..+..++ +|..+++++.||+|+
T Consensus 179 ~N~t~t-~ivsGgtek~lr~wDprt~~kimkLr-G------------HTdNVr~ll~~d------DGt~~ls~sSDgtIr 238 (735)
T KOG0308|consen 179 MNQTGT-IIVSGGTEKDLRLWDPRTCKKIMKLR-G------------HTDNVRVLLVND------DGTRLLSASSDGTIR 238 (735)
T ss_pred cCCcce-EEEecCcccceEEeccccccceeeee-c------------cccceEEEEEcC------CCCeEeecCCCceEE
Confidence 999997 89999999999999999999999888 5 688999999998 899999999999999
Q ss_pred EEeCCCcceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEecC
Q 017194 234 VINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGN 313 (375)
Q Consensus 234 i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~ 313 (375)
+||+... +++.++..|...|+++..+ |+=..+.+|+.
T Consensus 239 lWdLgqQ----------------------------------------rCl~T~~vH~e~VWaL~~~---~sf~~vYsG~r 275 (735)
T KOG0308|consen 239 LWDLGQQ----------------------------------------RCLATYIVHKEGVWALQSS---PSFTHVYSGGR 275 (735)
T ss_pred eeecccc----------------------------------------ceeeeEEeccCceEEEeeC---CCcceEEecCC
Confidence 9999853 6777899999999999999 88899999999
Q ss_pred CCeEEEEeCCCceeeeecchhhhhhhhcccccceeeeeecCCCCCcEEEeeCCCeEEEEec
Q 017194 314 DKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSI 374 (375)
Q Consensus 314 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~iw~~ 374 (375)
||.|..=|+.+.. ....+.....+|..+..+..+ +.+=++..|+.|+-|..
T Consensus 276 d~~i~~Tdl~n~~---------~~tlick~daPv~~l~~~~~~-~~~WvtTtds~I~rW~~ 326 (735)
T KOG0308|consen 276 DGNIYRTDLRNPA---------KSTLICKEDAPVLKLHLHEHD-NSVWVTTTDSSIKRWKL 326 (735)
T ss_pred CCcEEecccCCch---------hheEeecCCCchhhhhhcccc-CCceeeeccccceecCC
Confidence 9999999999962 222223334455555554322 23345556777777754
No 91
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=6.7e-32 Score=213.98 Aligned_cols=294 Identities=14% Similarity=0.191 Sum_probs=236.1
Q ss_pred CCceeEEEEecCCCCEEEEeCCCCcEEEEecccC--ceeeEeeecCccEEEEEEeCCCC-eEEEEcCCCeEEEEECCCCC
Q 017194 15 KATATCCIASRDRPGFVASSGEDGCICWFDLRSK--DVQLVTDVGNGPVTSLCFKSGNE-DIIYVSSGKEVKSFDVHMPA 91 (375)
Q Consensus 15 ~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~--~~~~~~~~~~~~v~~l~~~~~~~-~l~~~~~d~~i~iwd~~~~~ 91 (375)
.++|+++.|+|. ..+|++|+.|++++||.+... ..++.+.-...+|.+.+|.|+|. .+++++....++.||+.+.+
T Consensus 213 ~~~I~sv~FHp~-~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak 291 (514)
T KOG2055|consen 213 HGGITSVQFHPT-APLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAK 291 (514)
T ss_pred cCCceEEEecCC-CceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeeccccc
Confidence 478999999998 899999999999999998643 34666766789999999999999 88889989999999999765
Q ss_pred cccccccccCC-CcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCceeeeeEecCcccceeEEEEeeCCCcEEEEeecCCe
Q 017194 92 SWRPLESYNYN-KEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSK 170 (375)
Q Consensus 92 ~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~ 170 (375)
. ..+....++ ...+.....++++++|+..+..|.|.+....+++.+..++ -.+.|..++|+.+++ .|++++.+|.
T Consensus 292 ~-~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~K--ieG~v~~~~fsSdsk-~l~~~~~~Ge 367 (514)
T KOG2055|consen 292 V-TKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFK--IEGVVSDFTFSSDSK-ELLASGGTGE 367 (514)
T ss_pred c-ccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheee--eccEEeeEEEecCCc-EEEEEcCCce
Confidence 4 333333333 3467788999999999999999999999999999999998 688999999999998 7888888999
Q ss_pred EEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCcceeecccccC
Q 017194 171 LVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTT 250 (375)
Q Consensus 171 i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~ 250 (375)
|.+||++...++.++... ..-.-++++.++ ++.+||+|+..|.|-|||..+....
T Consensus 368 V~v~nl~~~~~~~rf~D~------------G~v~gts~~~S~------ng~ylA~GS~~GiVNIYd~~s~~~s------- 422 (514)
T KOG2055|consen 368 VYVWNLRQNSCLHRFVDD------------GSVHGTSLCISL------NGSYLATGSDSGIVNIYDGNSCFAS------- 422 (514)
T ss_pred EEEEecCCcceEEEEeec------------CccceeeeeecC------CCceEEeccCcceEEEeccchhhcc-------
Confidence 999999999999888744 112335666667 8999999999999999998753211
Q ss_pred CCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEecC--CCeEEEEeCCCceee
Q 017194 251 KPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGN--DKLVKVWDCSRFQGV 328 (375)
Q Consensus 251 ~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~--dg~i~iwd~~~~~~~ 328 (375)
...+++..+..-...|++++|+ +|.++||.+|. +..+++-.+.+....
T Consensus 423 ---------------------------~~PkPik~~dNLtt~Itsl~Fn---~d~qiLAiaS~~~knalrLVHvPS~TVF 472 (514)
T KOG2055|consen 423 ---------------------------TNPKPIKTVDNLTTAITSLQFN---HDAQILAIASRVKKNALRLVHVPSCTVF 472 (514)
T ss_pred ---------------------------CCCCchhhhhhhheeeeeeeeC---cchhhhhhhhhccccceEEEeccceeee
Confidence 1124445555667789999999 99999998875 678999998887433
Q ss_pred eecchhhhhhhhcccccceeeeeecCCCCCcEEEeeCCCeEEEEecC
Q 017194 329 QTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSIS 375 (375)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~iw~~~ 375 (375)
...+ .....-+.|+|++|+| .+.+||.|..+|+|.+|.+.
T Consensus 473 sNfP------~~n~~vg~vtc~aFSP-~sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 473 SNFP------TSNTKVGHVTCMAFSP-NSGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred ccCC------CCCCcccceEEEEecC-CCceEEeecCCCceeeEeec
Confidence 1110 1122336799999999 88899999999999999873
No 92
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=100.00 E-value=3.9e-32 Score=225.55 Aligned_cols=279 Identities=16% Similarity=0.285 Sum_probs=233.7
Q ss_pred CCCeeeecCCCceeEEEEecCCCCEEEEeCCCCcEEEEecccCcee--eEeeecCccEEE-EEEeC-CCCeEEEEcCCCe
Q 017194 6 AKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQ--LVTDVGNGPVTS-LCFKS-GNEDIIYVSSGKE 81 (375)
Q Consensus 6 ~~~~~l~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~--~~~~~~~~~v~~-l~~~~-~~~~l~~~~~d~~ 81 (375)
+..+.+.||+..|..+++.+. ..+++++.||++++|+-..++.+ ..+.+|.+-|.. +++.+ ++-.+++|+.|..
T Consensus 5 ~ls~~l~gH~~DVr~v~~~~~--~~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~ 82 (745)
T KOG0301|consen 5 KLSHELEGHKSDVRAVAVTDG--VCIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTT 82 (745)
T ss_pred eeEEEeccCccchheeEecCC--eEEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccce
Confidence 455789999999999888764 58999999999999997655543 345667777777 88875 4446999999999
Q ss_pred EEEEECCCCCcccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCceeeeeEecCcccceeEEEEeeCCCcE
Q 017194 82 VKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWE 161 (375)
Q Consensus 82 i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 161 (375)
+.+|.+.+ ..++..+.+|+..|.++....++. +++|+.|.++++|-+ +++...+. +|+..|+++...|++ .
T Consensus 83 i~v~~~~~---~~P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~--~~l~~~l~-gH~asVWAv~~l~e~--~ 153 (745)
T KOG0301|consen 83 IIVFKLSQ---AEPLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRI--GELVYSLQ-GHTASVWAVASLPEN--T 153 (745)
T ss_pred EEEEecCC---CCchhhhhccccceeeeecCCcCc-eEecccccceEEecc--hhhhcccC-CcchheeeeeecCCC--c
Confidence 99999885 577888889999999999888886 999999999999975 56666788 999999999999998 5
Q ss_pred EEEeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCcc
Q 017194 162 VISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESEL 241 (375)
Q Consensus 162 l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~ 241 (375)
+++|+.|.+|++|.- ++.++++.. |..-|+.+++-+ +..+++++.||.|++|++..
T Consensus 154 ~vTgsaDKtIklWk~--~~~l~tf~g-------------HtD~VRgL~vl~-------~~~flScsNDg~Ir~w~~~g-- 209 (745)
T KOG0301|consen 154 YVTGSADKTIKLWKG--GTLLKTFSG-------------HTDCVRGLAVLD-------DSHFLSCSNDGSIRLWDLDG-- 209 (745)
T ss_pred EEeccCcceeeeccC--Cchhhhhcc-------------chhheeeeEEec-------CCCeEeecCCceEEEEeccC--
Confidence 999999999999985 677777773 578999999996 77889999999999999964
Q ss_pred eeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEecCCCeEEEEe
Q 017194 242 NISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWD 321 (375)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd 321 (375)
.++.++.+|...|++++.. .++..++++++|++++||+
T Consensus 210 ---------------------------------------e~l~~~~ghtn~vYsis~~---~~~~~Ivs~gEDrtlriW~ 247 (745)
T KOG0301|consen 210 ---------------------------------------EVLLEMHGHTNFVYSISMA---LSDGLIVSTGEDRTLRIWK 247 (745)
T ss_pred ---------------------------------------ceeeeeeccceEEEEEEec---CCCCeEEEecCCceEEEee
Confidence 5667899999999999977 7888999999999999999
Q ss_pred CCCceeeeecchhhhhhhhcccccceeeeeecCCCCCcEEEeeCCCeEEEEec
Q 017194 322 CSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSI 374 (375)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~iw~~ 374 (375)
.... .+.+.-....|+++.+-+ +|+ |++|+.||.||||..
T Consensus 248 ~~e~-----------~q~I~lPttsiWsa~~L~-NgD-Ivvg~SDG~VrVfT~ 287 (745)
T KOG0301|consen 248 KDEC-----------VQVITLPTTSIWSAKVLL-NGD-IVVGGSDGRVRVFTV 287 (745)
T ss_pred cCce-----------EEEEecCccceEEEEEee-CCC-EEEeccCceEEEEEe
Confidence 8743 223333344888888887 765 899999999999975
No 93
>PTZ00420 coronin; Provisional
Probab=100.00 E-value=3.4e-31 Score=227.94 Aligned_cols=235 Identities=16% Similarity=0.116 Sum_probs=180.3
Q ss_pred CCeeeecCCCceeEEEEecCCCCEEEEeCCCCcEEEEecccCc--------eeeEeeecCccEEEEEEeCCCCeE-EEEc
Q 017194 7 KPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKD--------VQLVTDVGNGPVTSLCFKSGNEDI-IYVS 77 (375)
Q Consensus 7 ~~~~l~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~--------~~~~~~~~~~~v~~l~~~~~~~~l-~~~~ 77 (375)
.+..+.+|.++|.+++|+|+++.+||+|+.|++|+|||+.++. ++..+.+|...|.+++|+|++..+ ++++
T Consensus 66 ~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS 145 (568)
T PTZ00420 66 PVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSG 145 (568)
T ss_pred eEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEEe
Confidence 4567899999999999999767899999999999999997642 244678899999999999998764 6889
Q ss_pred CCCeEEEEECCCCCcccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCceeeeeEecCcccceeEE-----
Q 017194 78 SGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSV----- 152 (375)
Q Consensus 78 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~----- 152 (375)
.|+.|++||+++++....+ . |...|.+++|+|+|.+|++++.|+.|++||+++++.+..+. +|.+.+...
T Consensus 146 ~DgtIrIWDl~tg~~~~~i---~-~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~-gH~g~~~s~~v~~~ 220 (568)
T PTZ00420 146 FDSFVNIWDIENEKRAFQI---N-MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFH-IHDGGKNTKNIWID 220 (568)
T ss_pred CCCeEEEEECCCCcEEEEE---e-cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEe-cccCCceeEEEEee
Confidence 9999999999976543322 2 35689999999999999999999999999999999999998 898765433
Q ss_pred EEeeCCCcEEEEeecCC----eEEEeeCCC-CCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEe
Q 017194 153 QFIPWKPWEVISGGLDS----KLVMWDFSK-GRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAK 227 (375)
Q Consensus 153 ~~~~~~~~~l~~~~~d~----~i~~wd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~ 227 (375)
.|++++. ++++++.|+ +|++||++. .+++..+.... ....+......+ ++.++++|+
T Consensus 221 ~fs~d~~-~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~-----------~~~~L~p~~D~~------tg~l~lsGk 282 (568)
T PTZ00420 221 GLGGDDN-YILSTGFSKNNMREMKLWDLKNTTSALVTMSIDN-----------ASAPLIPHYDES------TGLIYLIGK 282 (568)
T ss_pred eEcCCCC-EEEEEEcCCCCccEEEEEECCCCCCceEEEEecC-----------CccceEEeeeCC------CCCEEEEEE
Confidence 3457777 678777664 799999995 56666655330 112222222222 688999999
Q ss_pred cCCcEEEEeCCCcceeecccccCCCCCCceeeccccc
Q 017194 228 GDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNI 264 (375)
Q Consensus 228 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~ 264 (375)
.|+.|++|++..+............+...++|.|+..
T Consensus 283 GD~tIr~~e~~~~~~~~l~~~~s~~p~~g~~f~Pkr~ 319 (568)
T PTZ00420 283 GDGNCRYYQHSLGSIRKVNEYKSCSPFRSFGFLPKQI 319 (568)
T ss_pred CCCeEEEEEccCCcEEeecccccCCCccceEEccccc
Confidence 9999999999876543333333445667778877654
No 94
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=100.00 E-value=3.9e-32 Score=200.03 Aligned_cols=244 Identities=18% Similarity=0.277 Sum_probs=211.0
Q ss_pred eEeeecCccEEEEEEeCCCCeEEEEcCCCeEEEEECCCCCcccccccccCCCcceeEEEEcC-CCCeEEEEeCCCcEEEE
Q 017194 52 LVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNP-KSSFLACADDGGDVKII 130 (375)
Q Consensus 52 ~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iw 130 (375)
+.+++|...|.+++|+.+|..|++++.|+++.+|+++..+ ...-....+|.+.|-.++|+| ....+++++.|.+|++|
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r-~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~w 92 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDR-FRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIW 92 (313)
T ss_pred HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchh-hhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEE
Confidence 4566789999999999999999999999999999998653 233344667888999999998 45789999999999999
Q ss_pred eCcCceeeeeEecCcccceeEEEEeeCCCcEEEEeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEee
Q 017194 131 DIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAI 210 (375)
Q Consensus 131 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 210 (375)
|++.+++..... . ...=.-+.|+|+|+ .++.++.|..|.+.|.++.+.....+. ...++.+.|
T Consensus 93 d~r~~k~~~~i~-~-~~eni~i~wsp~g~-~~~~~~kdD~it~id~r~~~~~~~~~~--------------~~e~ne~~w 155 (313)
T KOG1407|consen 93 DIRSGKCTARIE-T-KGENINITWSPDGE-YIAVGNKDDRITFIDARTYKIVNEEQF--------------KFEVNEISW 155 (313)
T ss_pred EeccCcEEEEee-c-cCcceEEEEcCCCC-EEEEecCcccEEEEEecccceeehhcc--------------cceeeeeee
Confidence 999999998887 3 34445578999999 699999999999999999888777764 367888899
Q ss_pred cCCccccCCCCEEEEEecCCcEEEEeCCCcceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCC
Q 017194 211 PDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHT 290 (375)
Q Consensus 211 ~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (375)
+. ++.+++.....|.|.|..... ++.+..+++|.
T Consensus 156 ~~------~nd~Fflt~GlG~v~ILsyps----------------------------------------Lkpv~si~AH~ 189 (313)
T KOG1407|consen 156 NN------SNDLFFLTNGLGCVEILSYPS----------------------------------------LKPVQSIKAHP 189 (313)
T ss_pred cC------CCCEEEEecCCceEEEEeccc----------------------------------------cccccccccCC
Confidence 86 688888888889999988774 36677899999
Q ss_pred ccEEEEEEeecCCCCcEEEEecCCCeEEEEeCCCceeeeecchhhhhhhhcccccceeeeeecCCCCCcEEEeeCCCeEE
Q 017194 291 AAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVK 370 (375)
Q Consensus 291 ~~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~ 370 (375)
....++.|+ |+|+|+|+|+.|-.+.+||++.. -+++.+..+.-+|..+.|+. ||++||++++|..|-
T Consensus 190 snCicI~f~---p~GryfA~GsADAlvSLWD~~EL---------iC~R~isRldwpVRTlSFS~-dg~~lASaSEDh~ID 256 (313)
T KOG1407|consen 190 SNCICIEFD---PDGRYFATGSADALVSLWDVDEL---------ICERCISRLDWPVRTLSFSH-DGRMLASASEDHFID 256 (313)
T ss_pred cceEEEEEC---CCCceEeeccccceeeccChhHh---------hhheeeccccCceEEEEecc-CcceeeccCccceEE
Confidence 999999999 99999999999999999999998 78888899999999999998 999999999998875
Q ss_pred EE
Q 017194 371 VY 372 (375)
Q Consensus 371 iw 372 (375)
|=
T Consensus 257 IA 258 (313)
T KOG1407|consen 257 IA 258 (313)
T ss_pred eE
Confidence 53
No 95
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=2.9e-31 Score=200.05 Aligned_cols=273 Identities=15% Similarity=0.190 Sum_probs=217.3
Q ss_pred CCCceeEEEEecCCCCEEEEeCCCCcEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEEcCCCeEEEEECCCCCcc
Q 017194 14 HKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASW 93 (375)
Q Consensus 14 h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i~iwd~~~~~~~ 93 (375)
-++.|.+|.|+|. ++.|+.++-||++++|++...+....++ |..++.+++|.++ ..+++|+.||.|+.+|+.++..
T Consensus 12 P~d~IS~v~f~~~-~~~LLvssWDgslrlYdv~~~~l~~~~~-~~~plL~c~F~d~-~~~~~G~~dg~vr~~Dln~~~~- 87 (323)
T KOG1036|consen 12 PEDGISSVKFSPS-SSDLLVSSWDGSLRLYDVPANSLKLKFK-HGAPLLDCAFADE-STIVTGGLDGQVRRYDLNTGNE- 87 (323)
T ss_pred ChhceeeEEEcCc-CCcEEEEeccCcEEEEeccchhhhhhee-cCCceeeeeccCC-ceEEEeccCceEEEEEecCCcc-
Confidence 3678999999988 6777778899999999999887666665 8999999999874 5699999999999999997643
Q ss_pred cccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCceeeeeEecCcccceeEEEEeeCCCcEEEEeecCCeEEE
Q 017194 94 RPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVM 173 (375)
Q Consensus 94 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~ 173 (375)
..+..|..+|.++.+++....+++|+.|++|++||.+.......+. ....|.++....+ .|++|+.+..+.+
T Consensus 88 ---~~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d--~~kkVy~~~v~g~---~LvVg~~~r~v~i 159 (323)
T KOG1036|consen 88 ---DQIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFD--QGKKVYCMDVSGN---RLVVGTSDRKVLI 159 (323)
T ss_pred ---eeeccCCCceEEEEeeccCCeEEEcccCccEEEEeccccccccccc--cCceEEEEeccCC---EEEEeecCceEEE
Confidence 2334468999999999988899999999999999998766666665 4458888877644 7999999999999
Q ss_pred eeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCcceeecccccCCCC
Q 017194 174 WDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPL 253 (375)
Q Consensus 174 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~ 253 (375)
||+++.....+.... .-...+.++++.| ++.-+++++-||.|.+=.+.......
T Consensus 160 yDLRn~~~~~q~reS-----------~lkyqtR~v~~~p------n~eGy~~sSieGRVavE~~d~s~~~~--------- 213 (323)
T KOG1036|consen 160 YDLRNLDEPFQRRES-----------SLKYQTRCVALVP------NGEGYVVSSIEGRVAVEYFDDSEEAQ--------- 213 (323)
T ss_pred EEcccccchhhhccc-----------cceeEEEEEEEec------CCCceEEEeecceEEEEccCCchHHh---------
Confidence 999987654432211 0246789999999 78889999999999886655431110
Q ss_pred CCceeecccccceeeeeeeecCCcceeEeeeeecCC---------CccEEEEEEeecCCCCcEEEEecCCCeEEEEeCCC
Q 017194 254 KGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGH---------TAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSR 324 (375)
Q Consensus 254 ~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd~~~ 324 (375)
...+.++.| -.+|++++|+ |--+.||||+.||.|.+||+.+
T Consensus 214 ---------------------------skkyaFkCHr~~~~~~~~~yPVNai~Fh---p~~~tfaTgGsDG~V~~Wd~~~ 263 (323)
T KOG1036|consen 214 ---------------------------SKKYAFKCHRLSEKDTEIIYPVNAIAFH---PIHGTFATGGSDGIVNIWDLFN 263 (323)
T ss_pred ---------------------------hhceeEEeeecccCCceEEEEeceeEec---cccceEEecCCCceEEEccCcc
Confidence 011122222 2479999999 6678999999999999999999
Q ss_pred ceeeeecchhhhhhhhcccccceeeeeecCCCCCcEEEee
Q 017194 325 FQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCD 364 (375)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~ 364 (375)
. +.+..+......|..++|+. +|..||+++
T Consensus 264 r---------Krl~q~~~~~~SI~slsfs~-dG~~LAia~ 293 (323)
T KOG1036|consen 264 R---------KRLKQLAKYETSISSLSFSM-DGSLLAIAS 293 (323)
T ss_pred h---------hhhhhccCCCCceEEEEecc-CCCeEEEEe
Confidence 8 66777888888899999998 999999986
No 96
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=1.3e-31 Score=212.21 Aligned_cols=255 Identities=19% Similarity=0.310 Sum_probs=213.5
Q ss_pred ecCCCceeEEEEecCCCCEEEEeCCCCcEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEEcCCCeEEEEECCCCC
Q 017194 12 RGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPA 91 (375)
Q Consensus 12 ~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i~iwd~~~~~ 91 (375)
++|...|.+++.++| +++||+|+.|..|.||+.++.+.++.+.+|.+.|.+++|-.....|++++.|+.+++|+++.
T Consensus 199 ~~h~keil~~avS~D-gkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~-- 275 (479)
T KOG0299|consen 199 KGHVKEILTLAVSSD-GKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQ-- 275 (479)
T ss_pred ccccceeEEEEEcCC-CcEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhH--
Confidence 489999999999999 99999999999999999999999999999999999999998888999999999999999983
Q ss_pred cccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCceeeeeEecCcccceeEEEEeeCCCcEEEEeecCCeE
Q 017194 92 SWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKL 171 (375)
Q Consensus 92 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i 171 (375)
...+.++.+|...|..+....-++.+-+|+.|+++++|++.. +....+. ++.+.+.|++|..+. .|++|+.+|.|
T Consensus 276 -~s~vetlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~e-esqlifr-g~~~sidcv~~In~~--HfvsGSdnG~I 350 (479)
T KOG0299|consen 276 -LSYVETLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPE-ESQLIFR-GGEGSIDCVAFINDE--HFVSGSDNGSI 350 (479)
T ss_pred -hHHHHHHhCCccceeeechhcccceEEeccccceeEEEeccc-cceeeee-CCCCCeeeEEEeccc--ceeeccCCceE
Confidence 567788889999999999998888888999999999999943 3334566 889999999999886 69999999999
Q ss_pred EEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCcceeecccccCC
Q 017194 172 VMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTK 251 (375)
Q Consensus 172 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~ 251 (375)
.+|++.+.+++......++..... ...-++.+|++++..| ...++++|+.+|.|++|-+..+.
T Consensus 351 aLWs~~KKkplf~~~~AHgv~~~~-~~~~~~~Witsla~i~------~sdL~asGS~~G~vrLW~i~~g~---------- 413 (479)
T KOG0299|consen 351 ALWSLLKKKPLFTSRLAHGVIPEL-DPVNGNFWITSLAVIP------GSDLLASGSWSGCVRLWKIEDGL---------- 413 (479)
T ss_pred EEeeecccCceeEeeccccccCCc-cccccccceeeeEecc------cCceEEecCCCCceEEEEecCCc----------
Confidence 999999999999888664433221 1222346999999999 79999999999999999999752
Q ss_pred CCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEe-cCCCeEEEEe
Q 017194 252 PLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISG-GNDKLVKVWD 321 (375)
Q Consensus 252 ~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~-~~dg~i~iwd 321 (375)
+.+.++..+. -.+.|++++|+ ++|+.|++| +....+--|-
T Consensus 414 --------------------------r~i~~l~~ls-~~GfVNsl~f~---~sgk~ivagiGkEhRlGRW~ 454 (479)
T KOG0299|consen 414 --------------------------RAINLLYSLS-LVGFVNSLAFS---NSGKRIVAGIGKEHRLGRWW 454 (479)
T ss_pred --------------------------cccceeeecc-cccEEEEEEEc---cCCCEEEEecccccccceee
Confidence 2334455554 46789999999 899855554 5555444443
No 97
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=100.00 E-value=1.8e-31 Score=200.15 Aligned_cols=304 Identities=16% Similarity=0.202 Sum_probs=225.9
Q ss_pred eecCCCceeEEEEecCCCCEEEEeCCCCcEEEEecccCce---------------eeEeeecCccEEEEEEeC-CCCeEE
Q 017194 11 LRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDV---------------QLVTDVGNGPVTSLCFKS-GNEDII 74 (375)
Q Consensus 11 l~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~---------------~~~~~~~~~~v~~l~~~~-~~~~l~ 74 (375)
.+-|.+.|+++...+..++++++|+.||.|.+||++.... ...-.+|.-.|..+.|-| |.-.+.
T Consensus 39 ~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFt 118 (397)
T KOG4283|consen 39 VRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFT 118 (397)
T ss_pred eccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceee
Confidence 4569999999999999899999999999999999975431 111235788999999988 445677
Q ss_pred EEcCCCeEEEEECCCCCcccccccccCCCcceeEEEEcCC---CCeEEEEeCCCcEEEEeCcCceeeeeEecCcccceeE
Q 017194 75 YVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPK---SSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSS 151 (375)
Q Consensus 75 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~ 151 (375)
+++.|.++++||..+-+.. ..++. ++.|.+-+++|- ..++|+|..+-.|++.|+.+|..-..+. +|...|.+
T Consensus 119 ssSFDhtlKVWDtnTlQ~a---~~F~m-e~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~Ls-GHr~~vla 193 (397)
T KOG4283|consen 119 SSSFDHTLKVWDTNTLQEA---VDFKM-EGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLS-GHRDGVLA 193 (397)
T ss_pred cccccceEEEeecccceee---EEeec-CceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeec-cccCceEE
Confidence 8888999999999875433 33332 678888899983 4568889899999999999999999999 99999999
Q ss_pred EEEeeCCCcEEEEeecCCeEEEeeCCCC-CcceEEecCCCCCCC-CCCcccCCCceeEEeecCCccccCCCCEEEEEecC
Q 017194 152 VQFIPWKPWEVISGGLDSKLVMWDFSKG-RPNKIVNFGLPENNG-NAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGD 229 (375)
Q Consensus 152 ~~~~~~~~~~l~~~~~d~~i~~wd~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~d 229 (375)
+.|+|..+++|++|+.||.|++||++.. .+...+..+...... ......|.+.++.++|+. ++.++++.+.|
T Consensus 194 V~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tS------d~~~l~~~gtd 267 (397)
T KOG4283|consen 194 VEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTS------DARYLASCGTD 267 (397)
T ss_pred EEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecc------cchhhhhccCc
Confidence 9999999999999999999999999875 455555533211001 113444778899999998 89999999999
Q ss_pred CcEEEEeCCCcceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEE
Q 017194 230 GVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLI 309 (375)
Q Consensus 230 g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~ 309 (375)
..+++|+..+++.......+ ....-+.|. .+. +. + .+...++
T Consensus 268 ~r~r~wn~~~G~ntl~~~g~--------------------------------~~~n~~~~~-~~~-~~-~---~~s~vfv 309 (397)
T KOG4283|consen 268 DRIRVWNMESGRNTLREFGP--------------------------------IIHNQTTSF-AVH-IQ-S---MDSDVFV 309 (397)
T ss_pred cceEEeecccCccccccccc--------------------------------ccccccccc-eEE-Ee-e---cccceEE
Confidence 99999999986543322111 000000010 011 11 1 1222333
Q ss_pred EecCCCeEEEEeCCCceeeeecchhhhhhhhcccccceeeeeecCCCCCcEEEeeCCCeEEEEe
Q 017194 310 SGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYS 373 (375)
Q Consensus 310 s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~iw~ 373 (375)
---.++.+.++++-.+ ..++.+..|...+.+.++-| +=+...+++.|+.|..|-
T Consensus 310 ~~p~~~~lall~~~sg---------s~ir~l~~h~k~i~c~~~~~-~fq~~~tg~~d~ni~~w~ 363 (397)
T KOG4283|consen 310 LFPNDGSLALLNLLEG---------SFVRRLSTHLKRINCAAYRP-DFEQCFTGDMNGNIYMWS 363 (397)
T ss_pred EEecCCeEEEEEccCc---------eEEEeeecccceeeEEeecC-chhhhhccccCCcccccc
Confidence 3333477888888887 56667778878888888888 778899999999999985
No 98
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=8.2e-31 Score=198.65 Aligned_cols=299 Identities=16% Similarity=0.185 Sum_probs=217.2
Q ss_pred CeeeecCCCceeEEEEecCCCCEEEEeCCCCcEEEEecccCcee--eEe--eecCccEEEEEEeCCCCeEEEE-cCCCeE
Q 017194 8 PRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQ--LVT--DVGNGPVTSLCFKSGNEDIIYV-SSGKEV 82 (375)
Q Consensus 8 ~~~l~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~--~~~--~~~~~~v~~l~~~~~~~~l~~~-~~d~~i 82 (375)
+..|++|.+.|++++|+.| |+.|||++.|++|+||+++..+.. +.+ ...-+-.+.+.|.||-+-++.. -...++
T Consensus 79 ~~~LKgH~~~vt~~~FsSd-GK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l 157 (420)
T KOG2096|consen 79 VSVLKGHKKEVTDVAFSSD-GKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKL 157 (420)
T ss_pred hhhhhccCCceeeeEEcCC-CceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEE
Confidence 4568999999999999999 999999999999999999764321 111 1123456889999998765554 455689
Q ss_pred EEEECCCCCcc---c------ccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCceeeeeEecCcccceeEEE
Q 017194 83 KSFDVHMPASW---R------PLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQ 153 (375)
Q Consensus 83 ~iwd~~~~~~~---~------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~ 153 (375)
++|.+...+.. . .+...+.|...+..+-...++.+|++++.|..|.+|+++ |+.+..+. .....-...+
T Consensus 158 ~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~id-tnq~~n~~aa 235 (420)
T KOG2096|consen 158 CVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSID-TNQSSNYDAA 235 (420)
T ss_pred EEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cceeeeec-ccccccccee
Confidence 99987542221 1 111223456677778888889999999999999999997 88888887 6666677889
Q ss_pred EeeCCCcEEEEeecCCeEEEeeCCC---CC-----cceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEE
Q 017194 154 FIPWKPWEVISGGLDSKLVMWDFSK---GR-----PNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVV 225 (375)
Q Consensus 154 ~~~~~~~~l~~~~~d~~i~~wd~~~---~~-----~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~ 225 (375)
.+|+|+ ++++++..--|++|.+-- |. ....++ + |...|..++|++ +...+++
T Consensus 236 vSP~GR-Fia~~gFTpDVkVwE~~f~kdG~fqev~rvf~Lk-G------------H~saV~~~aFsn------~S~r~vt 295 (420)
T KOG2096|consen 236 VSPDGR-FIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLK-G------------HQSAVLAAAFSN------SSTRAVT 295 (420)
T ss_pred eCCCCc-EEEEecCCCCceEEEEEeccCcchhhhhhhheec-c------------chhheeeeeeCC------CcceeEE
Confidence 999999 799999888999998642 21 122232 2 678999999999 8999999
Q ss_pred EecCCcEEEEeCCCcceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEee-eeecCCCccEEEEEEeecCCC
Q 017194 226 AKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLD-YSVGGHTAAASCVAFSMFGER 304 (375)
Q Consensus 226 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~~s~~~~~ 304 (375)
.+.||++++||+.-......- ...++.- ..+..-.+.-..++.+ |+
T Consensus 296 vSkDG~wriwdtdVrY~~~qD------------------------------pk~Lk~g~~pl~aag~~p~RL~ls---P~ 342 (420)
T KOG2096|consen 296 VSKDGKWRIWDTDVRYEAGQD------------------------------PKILKEGSAPLHAAGSEPVRLELS---PS 342 (420)
T ss_pred EecCCcEEEeeccceEecCCC------------------------------chHhhcCCcchhhcCCCceEEEeC---CC
Confidence 999999999998742111000 0000000 1122223334488999 99
Q ss_pred CcEEEEecCCCeEEEEeCCCceeeeecchhhhhhhhcccccceeeeeecCCCCCcEEEeeCCCeEEEEe
Q 017194 305 GKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYS 373 (375)
Q Consensus 305 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~iw~ 373 (375)
|+.||.+.. ..++++..++++ ........|...|.+++|++ +|+++++++ |..+++..
T Consensus 343 g~~lA~s~g-s~l~~~~se~g~--------~~~~~e~~h~~~Is~is~~~-~g~~~atcG-dr~vrv~~ 400 (420)
T KOG2096|consen 343 GDSLAVSFG-SDLKVFASEDGK--------DYPELEDIHSTTISSISYSS-DGKYIATCG-DRYVRVIR 400 (420)
T ss_pred CcEEEeecC-CceEEEEcccCc--------cchhHHHhhcCceeeEEecC-CCcEEeeec-ceeeeeec
Confidence 998887654 579999999985 33334456999999999999 999999986 56676653
No 99
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=9.2e-32 Score=214.61 Aligned_cols=242 Identities=24% Similarity=0.369 Sum_probs=204.3
Q ss_pred CccEEEEEEeCCCCeEEEEcCCCeEEEEECCCCCcccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCcee
Q 017194 58 NGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCL 137 (375)
Q Consensus 58 ~~~v~~l~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 137 (375)
...|.+++|+|...+=++....-.+.+|+..+....+.+..+ ...+.++.|-.||+++++|...|.|++||+.+...
T Consensus 26 ~~~vssl~fsp~~P~d~aVt~S~rvqly~~~~~~~~k~~srF---k~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~i 102 (487)
T KOG0310|consen 26 HNSVSSLCFSPKHPYDFAVTSSVRVQLYSSVTRSVRKTFSRF---KDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVI 102 (487)
T ss_pred cCcceeEecCCCCCCceEEecccEEEEEecchhhhhhhHHhh---ccceeEEEeecCCeEEEccCCcCcEEEeccccHHH
Confidence 468999999997665444444678999998876555556666 67899999999999999999999999999888778
Q ss_pred eeeEecCcccceeEEEEeeCCCcEEEEeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCcccc
Q 017194 138 YKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLD 217 (375)
Q Consensus 138 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 217 (375)
++.+. +|+.++..+.|+|+++.+|++|+.|+.+++||+.+......+. + |...|.+.+++|.
T Consensus 103 LR~~~-ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~-~------------htDYVR~g~~~~~---- 164 (487)
T KOG0310|consen 103 LRQLY-AHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELS-G------------HTDYVRCGDISPA---- 164 (487)
T ss_pred HHHHh-hccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEec-C------------CcceeEeeccccC----
Confidence 89999 9999999999999998889999999999999999887533333 3 6889999999996
Q ss_pred CCCCEEEEEecCCcEEEEeCCCcceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEE
Q 017194 218 KTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVA 297 (375)
Q Consensus 218 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 297 (375)
++.++++|+.||.|++||++... ..+.++ .|..+|..+.
T Consensus 165 -~~hivvtGsYDg~vrl~DtR~~~---------------------------------------~~v~el-nhg~pVe~vl 203 (487)
T KOG0310|consen 165 -NDHIVVTGSYDGKVRLWDTRSLT---------------------------------------SRVVEL-NHGCPVESVL 203 (487)
T ss_pred -CCeEEEecCCCceEEEEEeccCC---------------------------------------ceeEEe-cCCCceeeEE
Confidence 77899999999999999999631 122233 5889999999
Q ss_pred EeecCCCCcEEEEecCCCeEEEEeCCCceeeeecchhhhhhhhcccccceeeeeecCCCCCcEEEeeCCCeEEEEec
Q 017194 298 FSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSI 374 (375)
Q Consensus 298 ~s~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~iw~~ 374 (375)
+- |.|..+|+++. +.|+|||+.++. +.+.....|...|+|+++.. ++..|++++-|+.|++|++
T Consensus 204 ~l---psgs~iasAgG-n~vkVWDl~~G~--------qll~~~~~H~KtVTcL~l~s-~~~rLlS~sLD~~VKVfd~ 267 (487)
T KOG0310|consen 204 AL---PSGSLIASAGG-NSVKVWDLTTGG--------QLLTSMFNHNKTVTCLRLAS-DSTRLLSGSLDRHVKVFDT 267 (487)
T ss_pred Ec---CCCCEEEEcCC-CeEEEEEecCCc--------eehhhhhcccceEEEEEeec-CCceEeecccccceEEEEc
Confidence 99 89999999886 579999999764 45555666999999999998 8899999999999999985
No 100
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=100.00 E-value=3.4e-31 Score=221.14 Aligned_cols=299 Identities=17% Similarity=0.173 Sum_probs=235.2
Q ss_pred eeeecCCCceeEEEEecC----------CCCEEEEeCCCCcEEEEecccCceeeE-------------e-----------
Q 017194 9 RRLRGHKATATCCIASRD----------RPGFVASSGEDGCICWFDLRSKDVQLV-------------T----------- 54 (375)
Q Consensus 9 ~~l~~h~~~i~~~~~~~~----------~~~~l~s~~~d~~i~iw~~~~~~~~~~-------------~----------- 54 (375)
..+-.|...|+.+.--|- ....++|++.|++|++|+++.+..-.. .
T Consensus 363 ~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d 442 (1080)
T KOG1408|consen 363 SSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHD 442 (1080)
T ss_pred eeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhh
Confidence 344458888888766551 023589999999999999875321000 0
Q ss_pred -------------eecCccEEEEEEeCCCCeEEEEcCCCeEEEEECCCCCcccccccccCCCcceeEEEEcC---CCCeE
Q 017194 55 -------------DVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNP---KSSFL 118 (375)
Q Consensus 55 -------------~~~~~~v~~l~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~~~l 118 (375)
-.....+.+++.+|+|++|++|...|+++||++.. +......+.|+..|.|+.|+. ..++|
T Consensus 443 ~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~---l~~~~~~eAHesEilcLeyS~p~~~~kLL 519 (1080)
T KOG1408|consen 443 ASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQE---LEYTCFMEAHESEILCLEYSFPVLTNKLL 519 (1080)
T ss_pred ccCCcccccchhhcCcccceEEEEECCCcceecccCccCceEEEEehh---hhhhhheecccceeEEEeecCchhhhHhh
Confidence 01235789999999999999999999999999984 556666778999999999986 35789
Q ss_pred EEEeCCCcEEEEeCcCc-eeeeeEecCcccceeEEEEeeCC-CcEEEEeecCCeEEEeeCCCCCcceEEecCCCCCCCCC
Q 017194 119 ACADDGGDVKIIDIRQH-CLYKSLRAGHSSICSSVQFIPWK-PWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNA 196 (375)
Q Consensus 119 ~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~v~~~~~~~~~-~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~ 196 (375)
|+++.|..|++||+... .+++++. +|...|+++.|.-.| +..+++++.|..|.+--.+.......+.-+
T Consensus 520 ASasrdRlIHV~Dv~rny~l~qtld-~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~-------- 590 (1080)
T KOG1408|consen 520 ASASRDRLIHVYDVKRNYDLVQTLD-GHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRH-------- 590 (1080)
T ss_pred hhccCCceEEEEecccccchhhhhc-ccccceeEEEEeecCCceEEEeccCchhhheehhccccCceecccc--------
Confidence 99999999999999754 5678888 999999999998877 236899999987755333221111111111
Q ss_pred CcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCcceeecccccCCCCCCceeecccccceeeeeeeecCC
Q 017194 197 GQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSG 276 (375)
Q Consensus 197 ~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~ 276 (375)
........++.+++.| +.+++++++.|..|+|||+.++++.
T Consensus 591 t~t~~ktTlYDm~Vdp------~~k~v~t~cQDrnirif~i~sgKq~--------------------------------- 631 (1080)
T KOG1408|consen 591 TQTLSKTTLYDMAVDP------TSKLVVTVCQDRNIRIFDIESGKQV--------------------------------- 631 (1080)
T ss_pred ccccccceEEEeeeCC------CcceEEEEecccceEEEecccccee---------------------------------
Confidence 1111245788999988 7999999999999999999986544
Q ss_pred cceeEeeeeecCCCccEEEEEEeecCCCCcEEEEecCCCeEEEEeCCCceeeeecchhhhhhhhcccccceeeeeecCCC
Q 017194 277 GKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTE 356 (375)
Q Consensus 277 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 356 (375)
+..+.-.+|.+..-.+... |.|-|||+...|.++.++|..++ +++....+|...|+.+.|.+ |
T Consensus 632 ----k~FKgs~~~eG~lIKv~lD---PSgiY~atScsdktl~~~Df~sg---------EcvA~m~GHsE~VTG~kF~n-D 694 (1080)
T KOG1408|consen 632 ----KSFKGSRDHEGDLIKVILD---PSGIYLATSCSDKTLCFVDFVSG---------ECVAQMTGHSEAVTGVKFLN-D 694 (1080)
T ss_pred ----eeecccccCCCceEEEEEC---CCccEEEEeecCCceEEEEeccc---------hhhhhhcCcchheeeeeecc-c
Confidence 3333445677778888888 99999999999999999999999 99999999999999999999 9
Q ss_pred CCcEEEeeCCCeEEEEecC
Q 017194 357 SENLVVCDTSKVVKVYSIS 375 (375)
Q Consensus 357 ~~~l~s~~~dg~v~iw~~~ 375 (375)
-+.|++.+.||.|.||.++
T Consensus 695 CkHlISvsgDgCIFvW~lp 713 (1080)
T KOG1408|consen 695 CKHLISVSGDGCIFVWKLP 713 (1080)
T ss_pred chhheeecCCceEEEEECc
Confidence 9999999999999999975
No 101
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=100.00 E-value=2.4e-30 Score=219.21 Aligned_cols=334 Identities=16% Similarity=0.152 Sum_probs=244.0
Q ss_pred CCCCCeeeecCCCceeEEEEecCCCCEEEEeCCCCcEEEEecccCceeeEeeecCccEEEEEEeCCCCe-EEEEcCCCeE
Q 017194 4 AEAKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNED-IIYVSSGKEV 82 (375)
Q Consensus 4 ~~~~~~~l~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~-l~~~~~d~~i 82 (375)
+++.+.+++++.+.|+++.-+|- -..+|.|..+|+|.|++++.++.+.+++...+.|++++|..||+. +++++..|.+
T Consensus 191 t~K~v~~f~~~~s~IT~ieqsPa-LDVVaiG~~~G~ViifNlK~dkil~sFk~d~g~VtslSFrtDG~p~las~~~~G~m 269 (910)
T KOG1539|consen 191 TGKVVYTFQEFFSRITAIEQSPA-LDVVAIGLENGTVIIFNLKFDKILMSFKQDWGRVTSLSFRTDGNPLLASGRSNGDM 269 (910)
T ss_pred cCcEEEEecccccceeEeccCCc-ceEEEEeccCceEEEEEcccCcEEEEEEccccceeEEEeccCCCeeEEeccCCceE
Confidence 67788999999999999999998 889999999999999999999999999965699999999999976 4555666999
Q ss_pred EEEECCCCCcccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCce----eee-------------------
Q 017194 83 KSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHC----LYK------------------- 139 (375)
Q Consensus 83 ~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~----~~~------------------- 139 (375)
.+||++..+....+ ...|.+.|....|.|....+++++.|..+++|=.+++. .++
T Consensus 270 ~~wDLe~kkl~~v~--~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g 347 (910)
T KOG1539|consen 270 AFWDLEKKKLINVT--RNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQG 347 (910)
T ss_pred EEEEcCCCeeeeee--eccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCc
Confidence 99999864432222 22455666666777666666666666665555322110 000
Q ss_pred --------------------------------------------------------------------------------
Q 017194 140 -------------------------------------------------------------------------------- 139 (375)
Q Consensus 140 -------------------------------------------------------------------------------- 139 (375)
T Consensus 348 ~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW 427 (910)
T KOG1539|consen 348 HFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTW 427 (910)
T ss_pred EEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEE
Confidence
Q ss_pred ----------eEec----CcccceeEEEEeeCCCcEEEEeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCce
Q 017194 140 ----------SLRA----GHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFV 205 (375)
Q Consensus 140 ----------~~~~----~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 205 (375)
.+.. .-...+++++.++.|+ +.+.|+..|.|-+|++.+|-....+- ....|...|
T Consensus 428 ~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGN-F~~IG~S~G~Id~fNmQSGi~r~sf~----------~~~ah~~~V 496 (910)
T KOG1539|consen 428 NFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGN-FVFIGYSKGTIDRFNMQSGIHRKSFG----------DSPAHKGEV 496 (910)
T ss_pred eccCcccccEEecCccccccCcceEEEEEeccCc-eEEEeccCCeEEEEEcccCeeecccc----------cCccccCce
Confidence 0110 0124678888899998 78889999999999999887666662 011267899
Q ss_pred eEEeecCCccccCCCCEEEEEecCCcEEEEeCCCcceeecccccCCCCCCceeecccccceee---eeeeecCCcceeEe
Q 017194 206 HAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAE---MEILDQSGGKRLHL 282 (375)
Q Consensus 206 ~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~---~~~~~~~~~~~~~~ 282 (375)
+.++... .++.+++++.+|.+++||..+.......... ..+..+........++. .-.....+..+.+.
T Consensus 497 ~gla~D~------~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~--~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kv 568 (910)
T KOG1539|consen 497 TGLAVDG------TNRLLVSAGADGILKFWDFKKKVLKKSLRLG--SSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKV 568 (910)
T ss_pred eEEEecC------CCceEEEccCcceEEEEecCCcceeeeeccC--CCcceeeeeehhhhhhhhcCceeEEEEEchhhhh
Confidence 9999977 6889999999999999999976533322211 12222222222222221 11112222334456
Q ss_pred eeeecCCCccEEEEEEeecCCCCcEEEEecCCCeEEEEeCCCceeeeecchhhhhhhhcccccceeeeeecCCCCCcEEE
Q 017194 283 DYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVV 362 (375)
Q Consensus 283 ~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s 362 (375)
++.+.+|.+.|++++|| |||++|++++.|++|++||+.++..+ .......+++.+.|+| +|++||+
T Consensus 569 vR~f~gh~nritd~~FS---~DgrWlisasmD~tIr~wDlpt~~lI----------D~~~vd~~~~sls~SP-ngD~LAT 634 (910)
T KOG1539|consen 569 VREFWGHGNRITDMTFS---PDGRWLISASMDSTIRTWDLPTGTLI----------DGLLVDSPCTSLSFSP-NGDFLAT 634 (910)
T ss_pred hHHhhccccceeeeEeC---CCCcEEEEeecCCcEEEEeccCccee----------eeEecCCcceeeEECC-CCCEEEE
Confidence 77899999999999999 99999999999999999999998432 2334567889999999 9999999
Q ss_pred eeCC-CeEEEEe
Q 017194 363 CDTS-KVVKVYS 373 (375)
Q Consensus 363 ~~~d-g~v~iw~ 373 (375)
...| ..|++|.
T Consensus 635 ~Hvd~~gIylWs 646 (910)
T KOG1539|consen 635 VHVDQNGIYLWS 646 (910)
T ss_pred EEecCceEEEEE
Confidence 9988 6799994
No 102
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=100.00 E-value=7.4e-31 Score=217.97 Aligned_cols=344 Identities=15% Similarity=0.106 Sum_probs=251.8
Q ss_pred CCCeeeecCCCceeEEEEecCCC--CEEEEeCCCCcEEEEecccCc---------------------ee----------e
Q 017194 6 AKPRRLRGHKATATCCIASRDRP--GFVASSGEDGCICWFDLRSKD---------------------VQ----------L 52 (375)
Q Consensus 6 ~~~~~l~~h~~~i~~~~~~~~~~--~~l~s~~~d~~i~iw~~~~~~---------------------~~----------~ 52 (375)
+.+..|.||.+.|.+++|....+ -+|||++.|..||||.+.-+. .. .
T Consensus 182 ~~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~ea 261 (764)
T KOG1063|consen 182 ARVAELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEA 261 (764)
T ss_pred eEEEEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhh
Confidence 45678999999999999987633 379999999999999875332 01 1
Q ss_pred EeeecCccEEEEEEeCCCCeEEEEcCCCeEEEEECCCCCc----ccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEE
Q 017194 53 VTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPAS----WRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVK 128 (375)
Q Consensus 53 ~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i~iwd~~~~~~----~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 128 (375)
.+.+|++.|+++.|+|.+..|++++.|+++.+|...+..- ...+....+.........|+|+++.+++-+..|..+
T Consensus 262 ll~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~h 341 (764)
T KOG1063|consen 262 LLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFH 341 (764)
T ss_pred hhcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcEE
Confidence 1237999999999999999999999999999999875321 112223333455688999999999999999999999
Q ss_pred EEeCcCc---eeeeeEecCcccceeEEEEeeCCCcEEEEeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCce
Q 017194 129 IIDIRQH---CLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFV 205 (375)
Q Consensus 129 iwd~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 205 (375)
+|..+.. .....+. +|...|++++|+|.|+ +|++.+.|.+-|+|-.- |+...-.+.. +...|...+
T Consensus 342 lWkt~d~~~w~~~~~iS-GH~~~V~dv~W~psGe-flLsvs~DQTTRlFa~w-g~q~~wHEia--------RPQiHGyDl 410 (764)
T KOG1063|consen 342 LWKTKDKTFWTQEPVIS-GHVDGVKDVDWDPSGE-FLLSVSLDQTTRLFARW-GRQQEWHEIA--------RPQIHGYDL 410 (764)
T ss_pred EEeccCccceeeccccc-cccccceeeeecCCCC-EEEEeccccceeeeccc-ccccceeeec--------ccccccccc
Confidence 9983322 2233445 9999999999999999 79999999999998755 3322222222 233456788
Q ss_pred eEEeecCCccccCCCCEEEEEecCCcEEEEeCCCcce-----------------ee-------------cc---------
Q 017194 206 HAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELN-----------------IS-------------RS--------- 246 (375)
Q Consensus 206 ~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-----------------~~-------------~~--------- 246 (375)
+++++-+ ....+++|..+..+++|+...... +. ..
T Consensus 411 ~c~~~vn------~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~ 484 (764)
T KOG1063|consen 411 TCLSFVN------EDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGE 484 (764)
T ss_pred eeeehcc------CCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccc
Confidence 9999987 366777888888889998753100 00 00
Q ss_pred ----------------ccc--------------------CCCCCCceeecccccceeeee--------eeecCCcceeEe
Q 017194 247 ----------------KST--------------------TKPLKGSQSTSKVNIRDAEME--------ILDQSGGKRLHL 282 (375)
Q Consensus 247 ----------------~~~--------------------~~~~~~~~~~s~~g~~~~~~~--------~~~~~~~~~~~~ 282 (375)
..+ +...+.+++.+|+|+.+++.- ....++......
T Consensus 485 ~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~ 564 (764)
T KOG1063|consen 485 AAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQ 564 (764)
T ss_pred cceeeecccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhh
Confidence 000 111234456778888887621 222233334445
Q ss_pred eeeecCCCccEEEEEEeecCCCCcEEEEecCCCeEEEEeCCCceeeeecchhhhhhhhcccccceeeeeecCCCCCcEEE
Q 017194 283 DYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVV 362 (375)
Q Consensus 283 ~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s 362 (375)
.+.+.+|.-.|+.++|| |||++|++.+.|+++.+|......... .-+.....|+.-|.+..|+| ++.+++|
T Consensus 565 ~~~L~~HsLTVT~l~FS---pdg~~LLsvsRDRt~sl~~~~~~~~~e-----~~fa~~k~HtRIIWdcsW~p-de~~FaT 635 (764)
T KOG1063|consen 565 VQELEGHSLTVTRLAFS---PDGRYLLSVSRDRTVSLYEVQEDIKDE-----FRFACLKAHTRIIWDCSWSP-DEKYFAT 635 (764)
T ss_pred hheecccceEEEEEEEC---CCCcEEEEeecCceEEeeeeecccchh-----hhhccccccceEEEEcccCc-ccceeEE
Confidence 56789999999999999 999999999999999999986642110 11334678999999999999 9999999
Q ss_pred eeCCCeEEEEecC
Q 017194 363 CDTSKVVKVYSIS 375 (375)
Q Consensus 363 ~~~dg~v~iw~~~ 375 (375)
+|.|..|++|..+
T Consensus 636 aSRDK~VkVW~~~ 648 (764)
T KOG1063|consen 636 ASRDKKVKVWEEP 648 (764)
T ss_pred ecCCceEEEEecc
Confidence 9999999999864
No 103
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=3.5e-32 Score=206.82 Aligned_cols=247 Identities=18% Similarity=0.242 Sum_probs=216.4
Q ss_pred eecCCCceeEEEEecCCCCEEEEeCCCCcEEEEecccCceeeEee-ecCccEEEEEEeCCCCeEEEEcCCCeEEEEECCC
Q 017194 11 LRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTD-VGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHM 89 (375)
Q Consensus 11 l~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~-~~~~~v~~l~~~~~~~~l~~~~~d~~i~iwd~~~ 89 (375)
|--|+++|.|+.|+.| .++||+|+.||.|++|.+++|.+++.+. +|...|+++.|+.|+..+++++.|.++++.-+++
T Consensus 259 fMMmd~aVlci~FSRD-sEMlAsGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKS 337 (508)
T KOG0275|consen 259 FMMMDDAVLCISFSRD-SEMLASGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKS 337 (508)
T ss_pred eeecccceEEEeeccc-HHHhhccCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEecccc
Confidence 4457899999999999 8999999999999999999999999987 8999999999999999999999999999999997
Q ss_pred CCcccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCceeeeeEec-CcccceeEEEEeeCCCcEEEEeecC
Q 017194 90 PASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRA-GHSSICSSVQFIPWKPWEVISGGLD 168 (375)
Q Consensus 90 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~d 168 (375)
+ +.++.+.+|...|+...|.++|..+++++.||+|++|+.++.+++.+|+. +...+|+++-..|.++..+++|...
T Consensus 338 G---K~LKEfrGHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrs 414 (508)
T KOG0275|consen 338 G---KCLKEFRGHSSYVNEATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRS 414 (508)
T ss_pred c---hhHHHhcCccccccceEEcCCCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCC
Confidence 6 55667788999999999999999999999999999999999999999873 3455889999999887789999999
Q ss_pred CeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCcceeecccc
Q 017194 169 SKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKS 248 (375)
Q Consensus 169 ~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~ 248 (375)
++|++.++. |+.++.+..+..+ .+...+...+| .|.++.+.+.|+.++.|...++
T Consensus 415 ntv~imn~q-GQvVrsfsSGkRE----------gGdFi~~~lSp------kGewiYcigED~vlYCF~~~sG-------- 469 (508)
T KOG0275|consen 415 NTVYIMNMQ-GQVVRSFSSGKRE----------GGDFINAILSP------KGEWIYCIGEDGVLYCFSVLSG-------- 469 (508)
T ss_pred CeEEEEecc-ceEEeeeccCCcc----------CCceEEEEecC------CCcEEEEEccCcEEEEEEeecC--------
Confidence 999999986 7788887755211 23344566777 7999999999999999998875
Q ss_pred cCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEecCCCeEEEEe
Q 017194 249 TTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWD 321 (375)
Q Consensus 249 ~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd 321 (375)
.+...+.-|...+-.++-+ |..+.||+-++||.+++|.
T Consensus 470 --------------------------------~LE~tl~VhEkdvIGl~HH---PHqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 470 --------------------------------KLERTLPVHEKDVIGLTHH---PHQNLLASYSEDGLLKLWK 507 (508)
T ss_pred --------------------------------ceeeeeecccccccccccC---cccchhhhhcccchhhhcC
Confidence 4455777888889999888 8889999999999999995
No 104
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=100.00 E-value=4.4e-30 Score=206.02 Aligned_cols=338 Identities=13% Similarity=0.082 Sum_probs=249.4
Q ss_pred CeeeecCCCceeEEEEecCCCCEEEEe---CCCCcEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEEcCCCeEEE
Q 017194 8 PRRLRGHKATATCCIASRDRPGFVASS---GEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKS 84 (375)
Q Consensus 8 ~~~l~~h~~~i~~~~~~~~~~~~l~s~---~~d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i~i 84 (375)
+..+-..+..|.|++|++.++.-++.+ +.+..+.+||.+.+......+..++.|....|+|.+..++.....+.+.+
T Consensus 147 L~V~g~f~~GV~~vaFsk~~~G~~l~~vD~s~~h~lSVWdWqk~~~~~~vk~sne~v~~a~FHPtd~nliit~Gk~H~~F 226 (626)
T KOG2106|consen 147 LHVIGFFDRGVTCVAFSKINGGSLLCAVDDSNPHMLSVWDWQKKAKLGPVKTSNEVVFLATFHPTDPNLIITCGKGHLYF 226 (626)
T ss_pred eeeeccccccceeeeecccCCCceEEEecCCCccccchhhchhhhccCcceeccceEEEEEeccCCCcEEEEeCCceEEE
Confidence 344445678899999998754433333 44567999999998887777777889999999998877777777899999
Q ss_pred EECCCCCcccccccccCC-CcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCceeeeeEecCcccceeEEEEeeCCCcEEE
Q 017194 85 FDVHMPASWRPLESYNYN-KEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVI 163 (375)
Q Consensus 85 wd~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~ 163 (375)
|+++.+...+....++.+ ...|.|++|.+++ -+++|..+|.|.||+..+.+..+... .|.+.|.+++...+|. |+
T Consensus 227 w~~~~~~l~k~~~~fek~ekk~Vl~v~F~eng-dviTgDS~G~i~Iw~~~~~~~~k~~~-aH~ggv~~L~~lr~Gt--ll 302 (626)
T KOG2106|consen 227 WTLRGGSLVKRQGIFEKREKKFVLCVTFLENG-DVITGDSGGNILIWSKGTNRISKQVH-AHDGGVFSLCMLRDGT--LL 302 (626)
T ss_pred EEccCCceEEEeeccccccceEEEEEEEcCCC-CEEeecCCceEEEEeCCCceEEeEee-ecCCceEEEEEecCcc--Ee
Confidence 999987666665555433 3579999999998 57789999999999998888888888 8999999999999995 78
Q ss_pred EeecCCeEEEeeCCCCCcceEEecC------------CCC--------------CC--CCCCcccCCCceeEEeecCCcc
Q 017194 164 SGGLDSKLVMWDFSKGRPNKIVNFG------------LPE--------------NN--GNAGQCYNPAFVHAIAIPDADM 215 (375)
Q Consensus 164 ~~~~d~~i~~wd~~~~~~~~~~~~~------------~~~--------------~~--~~~~~~~~~~~v~~~~~~~~~~ 215 (375)
+|+.|..|..||- .-+.++..+++ .++ .. ..-....|......++.+|
T Consensus 303 SGgKDRki~~Wd~-~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hp--- 378 (626)
T KOG2106|consen 303 SGGKDRKIILWDD-NYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHP--- 378 (626)
T ss_pred ecCccceEEeccc-cccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCC---
Confidence 8999999999993 22222222221 111 00 0001112445567788888
Q ss_pred ccCCCCEEEEEecCCcEEEEeCCCcceeecccccCCCCCCceeecccccceee---eeeeecCCcceeEeeeeecCCCcc
Q 017194 216 LDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAE---MEILDQSGGKRLHLDYSVGGHTAA 292 (375)
Q Consensus 216 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~ 292 (375)
+...+++++.|+.+++|+ ..+ .........+..+..|.|.| .++. .|.|-.-+.++...+..-.. ..+
T Consensus 379 ---s~~q~~T~gqdk~v~lW~--~~k--~~wt~~~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~~d-~~~ 449 (626)
T KOG2106|consen 379 ---SKNQLLTCGQDKHVRLWN--DHK--LEWTKIIEDPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVTIHTD-NEQ 449 (626)
T ss_pred ---ChhheeeccCcceEEEcc--CCc--eeEEEEecCceeEeeccCcc-eEEEeeccceEEEEecccceeEEEEec-CCc
Confidence 789999999999999999 222 22333344677888999999 5554 33333333333333333333 889
Q ss_pred EEEEEEeecCCCCcEEEEecCCCeEEEEeCCCceeeeecchhhhhhhhcccccceeeeeecCCCCCcEEEeeCCCeEEEE
Q 017194 293 ASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVY 372 (375)
Q Consensus 293 v~~~~~s~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~iw 372 (375)
++.++|+ |+|.+||.|+.|+.|+||.+..... +..+.-..+..+|+.+.|++ |+++|.+-+.|-.|..|
T Consensus 450 ls~v~ys---p~G~~lAvgs~d~~iyiy~Vs~~g~-------~y~r~~k~~gs~ithLDwS~-Ds~~~~~~S~d~eiLyW 518 (626)
T KOG2106|consen 450 LSVVRYS---PDGAFLAVGSHDNHIYIYRVSANGR-------KYSRVGKCSGSPITHLDWSS-DSQFLVSNSGDYEILYW 518 (626)
T ss_pred eEEEEEc---CCCCEEEEecCCCeEEEEEECCCCc-------EEEEeeeecCceeEEeeecC-CCceEEeccCceEEEEE
Confidence 9999999 9999999999999999999987642 22222223448999999999 99999999999999999
Q ss_pred e
Q 017194 373 S 373 (375)
Q Consensus 373 ~ 373 (375)
.
T Consensus 519 ~ 519 (626)
T KOG2106|consen 519 K 519 (626)
T ss_pred c
Confidence 4
No 105
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=1e-30 Score=196.51 Aligned_cols=248 Identities=15% Similarity=0.160 Sum_probs=193.2
Q ss_pred ecCccEEEEEEeCC-CCeEEEEcCCCeEEEEECCCCCcccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcC
Q 017194 56 VGNGPVTSLCFKSG-NEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQ 134 (375)
Q Consensus 56 ~~~~~v~~l~~~~~-~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 134 (375)
..++.|.+|+|+|. ...+++++.|++||+|+++....... +....|.++|.+++|+.||..+++|+.|+.+++||+.+
T Consensus 25 pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~-ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S 103 (347)
T KOG0647|consen 25 PPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVP-KAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLAS 103 (347)
T ss_pred CcccchheeEeccccCceEEecccCCceEEEEEecCCcccc-hhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccC
Confidence 35788999999994 45566889999999999986433333 44556789999999999999999999999999999999
Q ss_pred ceeeeeEecCcccceeEEEEeeCCC-cEEEEeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCC
Q 017194 135 HCLYKSLRAGHSSICSSVQFIPWKP-WEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDA 213 (375)
Q Consensus 135 ~~~~~~~~~~~~~~v~~~~~~~~~~-~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 213 (375)
++. ..+. .|..+|..+.|-+... ..|++|+.|.+|++||++...++.++.++ ..++++..
T Consensus 104 ~Q~-~~v~-~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LP--------------eRvYa~Dv--- 164 (347)
T KOG0647|consen 104 GQV-SQVA-AHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLP--------------ERVYAADV--- 164 (347)
T ss_pred CCe-eeee-ecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeecc--------------ceeeehhc---
Confidence 955 4555 7999999999987654 26899999999999999999999999865 77888877
Q ss_pred ccccCCCCEEEEEecCCcEEEEeCCCcceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccE
Q 017194 214 DMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAA 293 (375)
Q Consensus 214 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 293 (375)
...+++++..++.|.+|+++.+....+.. ...-+-.+
T Consensus 165 -----~~pm~vVata~r~i~vynL~n~~te~k~~--------------------------------------~SpLk~Q~ 201 (347)
T KOG0647|consen 165 -----LYPMAVVATAERHIAVYNLENPPTEFKRI--------------------------------------ESPLKWQT 201 (347)
T ss_pred -----cCceeEEEecCCcEEEEEcCCCcchhhhh--------------------------------------cCccccee
Confidence 47789999999999999998653222111 11124467
Q ss_pred EEEEEeecCCCCcEEEEecCCCeEEEEeCCCceee--eecchhhhhhh---hcccccceeeeeecCCCCCcEEEeeCCCe
Q 017194 294 SCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGV--QTSINNDLLIK---NINLNKKVNWLCTTPTESENLVVCDTSKV 368 (375)
Q Consensus 294 ~~~~~s~~~~~~~~l~s~~~dg~i~iwd~~~~~~~--~~~~~~~~~~~---~~~~~~~v~~~~~~~~~~~~l~s~~~dg~ 368 (375)
++++.. +|....|.|+-+|.+.|..+..+... ... ++.+. ..+.-..|++++|+| .-..|++++.||+
T Consensus 202 R~va~f---~d~~~~alGsiEGrv~iq~id~~~~~~nFtF---kCHR~~~~~~~~VYaVNsi~FhP-~hgtlvTaGsDGt 274 (347)
T KOG0647|consen 202 RCVACF---QDKDGFALGSIEGRVAIQYIDDPNPKDNFTF---KCHRSTNSVNDDVYAVNSIAFHP-VHGTLVTAGSDGT 274 (347)
T ss_pred eEEEEE---ecCCceEeeeecceEEEEecCCCCccCceeE---EEeccCCCCCCceEEecceEeec-ccceEEEecCCce
Confidence 889888 78877899999999999999885221 000 11111 111234789999999 5568999999999
Q ss_pred EEEEe
Q 017194 369 VKVYS 373 (375)
Q Consensus 369 v~iw~ 373 (375)
+.+||
T Consensus 275 f~FWD 279 (347)
T KOG0647|consen 275 FSFWD 279 (347)
T ss_pred EEEec
Confidence 99998
No 106
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3e-31 Score=193.55 Aligned_cols=258 Identities=18% Similarity=0.229 Sum_probs=206.3
Q ss_pred eecCCCceeEEEEecCCCCEEEEeCCCCcEEEEecccCc---eeeEeeecCccEEEEEEeC--CCCeEEEEcCCCeEEEE
Q 017194 11 LRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKD---VQLVTDVGNGPVTSLCFKS--GNEDIIYVSSGKEVKSF 85 (375)
Q Consensus 11 l~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~---~~~~~~~~~~~v~~l~~~~--~~~~l~~~~~d~~i~iw 85 (375)
-..|++.|..+...-- |+.|||++.|++|+|+..+... .+.++.+|.++|..++|.. -|..|++++.||.|.||
T Consensus 7 dt~H~D~IHda~lDyy-gkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiW 85 (299)
T KOG1332|consen 7 DTQHEDMIHDAQLDYY-GKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIW 85 (299)
T ss_pred hhhhhhhhhHhhhhhh-cceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEE
Confidence 3579999999888877 8999999999999999997654 5788999999999999965 78999999999999999
Q ss_pred ECCCCCcccccccccCCCcceeEEEEcCC--CCeEEEEeCCCcEEEEeCcCc---eeeeeEecCcccceeEEEEeeC---
Q 017194 86 DVHMPASWRPLESYNYNKEEINQIVCNPK--SSFLACADDGGDVKIIDIRQH---CLYKSLRAGHSSICSSVQFIPW--- 157 (375)
Q Consensus 86 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~iwd~~~~---~~~~~~~~~~~~~v~~~~~~~~--- 157 (375)
.-+++ .......+..|...|++++|.|. |-.|++++.||.|.|.+.+.. ...+... .|.-.|++++|.|.
T Consensus 86 ke~~g-~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~-aH~~GvnsVswapa~~~ 163 (299)
T KOG1332|consen 86 KEENG-RWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVF-AHEIGVNSVSWAPASAP 163 (299)
T ss_pred ecCCC-chhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhh-ccccccceeeecCcCCC
Confidence 98877 67777888889999999999995 567999999999999998754 1223344 79999999999986
Q ss_pred CC----------cEEEEeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEe
Q 017194 158 KP----------WEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAK 227 (375)
Q Consensus 158 ~~----------~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~ 227 (375)
|. +.|++|+.|..|++|+..+++-...-.+. -|...|+.+++.|..-+ -...+++++
T Consensus 164 g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~-----------~H~dwVRDVAwaP~~gl--~~s~iAS~S 230 (299)
T KOG1332|consen 164 GSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLE-----------GHKDWVRDVAWAPSVGL--PKSTIASCS 230 (299)
T ss_pred ccccccCcccccceeeccCCccceeeeecCCcchhhhhhhh-----------hcchhhhhhhhccccCC--CceeeEEec
Confidence 31 25999999999999999886433222111 16789999999994110 235799999
Q ss_pred cCCcEEEEeCCCcceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcE
Q 017194 228 GDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKY 307 (375)
Q Consensus 228 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~ 307 (375)
+||++.||..+...... ... .+......+..+.|| ..|.+
T Consensus 231 qDg~viIwt~~~e~e~w----------------------------------k~t---ll~~f~~~~w~vSWS---~sGn~ 270 (299)
T KOG1332|consen 231 QDGTVIIWTKDEEYEPW----------------------------------KKT---LLEEFPDVVWRVSWS---LSGNI 270 (299)
T ss_pred CCCcEEEEEecCccCcc----------------------------------ccc---ccccCCcceEEEEEe---ccccE
Confidence 99999999887321110 112 222346789999999 89999
Q ss_pred EEEecCCCeEEEEeCCC
Q 017194 308 LISGGNDKLVKVWDCSR 324 (375)
Q Consensus 308 l~s~~~dg~i~iwd~~~ 324 (375)
|+.++.|+.|.+|.-..
T Consensus 271 LaVs~GdNkvtlwke~~ 287 (299)
T KOG1332|consen 271 LAVSGGDNKVTLWKENV 287 (299)
T ss_pred EEEecCCcEEEEEEeCC
Confidence 99999999999997654
No 107
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=2.3e-30 Score=205.53 Aligned_cols=265 Identities=16% Similarity=0.172 Sum_probs=211.0
Q ss_pred EEEEeC-CCCcEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEEcCCCeEEEEECCCCCcccccccccCCCcceeE
Q 017194 30 FVASSG-EDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQ 108 (375)
Q Consensus 30 ~l~s~~-~d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~ 108 (375)
+++++. ....|.+|.+...........-.++|.+++-+|+|.+|+.|+..+.|++|.+.+|..+ ..+..|-..|++
T Consensus 52 yllsaq~~rp~l~vw~i~k~~~~~q~~v~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL---~v~~aHYQ~ITc 128 (476)
T KOG0646|consen 52 YLLSAQLKRPLLHVWEILKKDQVVQYIVLPGPVHALASSNLGYFLLAGTISGNLYLWELSSGILL---NVLSAHYQSITC 128 (476)
T ss_pred heeeecccCccccccccCchhhhhhhcccccceeeeecCCCceEEEeecccCcEEEEEeccccHH---HHHHhhccceeE
Confidence 444443 2346888888766554433334678999999999999998889999999999987544 444668899999
Q ss_pred EEEcCCCCeEEEEeCCCcEEEEeCc---------CceeeeeEecCcccceeEEEEeeCCC-cEEEEeecCCeEEEeeCCC
Q 017194 109 IVCNPKSSFLACADDGGDVKIIDIR---------QHCLYKSLRAGHSSICSSVQFIPWKP-WEVISGGLDSKLVMWDFSK 178 (375)
Q Consensus 109 ~~~~~~~~~l~~~~~dg~i~iwd~~---------~~~~~~~~~~~~~~~v~~~~~~~~~~-~~l~~~~~d~~i~~wd~~~ 178 (375)
+.|+.|+.+|++|+.||.|.+|++. +-+++..|. .|.-+|+++...+.+. ..+++++.|.++++||+..
T Consensus 129 L~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~-~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~ 207 (476)
T KOG0646|consen 129 LKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFS-DHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSL 207 (476)
T ss_pred EEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeec-cCcceeEEEEecCCCccceEEEecCCceEEEEEecc
Confidence 9999999999999999999999874 235677888 9999999999877642 3799999999999999999
Q ss_pred CCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCcceeecccccCCCCCCcee
Q 017194 179 GRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQS 258 (375)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~ 258 (375)
+..+..+.++ ..+++++++| .++.+++|+.+|.|.+.++........ .+..-.
T Consensus 208 g~LLlti~fp--------------~si~av~lDp------ae~~~yiGt~~G~I~~~~~~~~~~~~~-------~v~~k~ 260 (476)
T KOG0646|consen 208 GVLLLTITFP--------------SSIKAVALDP------AERVVYIGTEEGKIFQNLLFKLSGQSA-------GVNQKG 260 (476)
T ss_pred ceeeEEEecC--------------CcceeEEEcc------cccEEEecCCcceEEeeehhcCCcccc-------cccccc
Confidence 9999998854 8899999999 699999999999999998875321000 000000
Q ss_pred ecccccceeeeeeeecCCcceeEeeeeecCCCc--cEEEEEEeecCCCCcEEEEecCCCeEEEEeCCCceeeeecchhhh
Q 017194 259 TSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTA--AASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDL 336 (375)
Q Consensus 259 ~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 336 (375)
+ .........+.+|.+ .|+|++++ -||.+|++|+.||.++|||+.+. .+
T Consensus 261 ~-----------------~~~~t~~~~~~Gh~~~~~ITcLais---~DgtlLlSGd~dg~VcvWdi~S~---------Q~ 311 (476)
T KOG0646|consen 261 R-----------------HEENTQINVLVGHENESAITCLAIS---TDGTLLLSGDEDGKVCVWDIYSK---------QC 311 (476)
T ss_pred c-----------------ccccceeeeeccccCCcceeEEEEe---cCccEEEeeCCCCCEEEEecchH---------HH
Confidence 1 111234457788888 99999999 99999999999999999999998 67
Q ss_pred hhhhcccccceeeeeecC
Q 017194 337 LIKNINLNKKVNWLCTTP 354 (375)
Q Consensus 337 ~~~~~~~~~~v~~~~~~~ 354 (375)
++.+....++|+.+.+.|
T Consensus 312 iRtl~~~kgpVtnL~i~~ 329 (476)
T KOG0646|consen 312 IRTLQTSKGPVTNLQINP 329 (476)
T ss_pred HHHHhhhccccceeEeec
Confidence 777777888999998866
No 108
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.98 E-value=2.7e-31 Score=219.09 Aligned_cols=212 Identities=14% Similarity=0.137 Sum_probs=190.5
Q ss_pred CCeeeecCCCceeEEEEecCCCCEEEEeCCCCcEEEEecccC--ceeeEeeecCccEEEEEE-eCCCCeEEEEcCCCeEE
Q 017194 7 KPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSK--DVQLVTDVGNGPVTSLCF-KSGNEDIIYVSSGKEVK 83 (375)
Q Consensus 7 ~~~~l~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~--~~~~~~~~~~~~v~~l~~-~~~~~~l~~~~~d~~i~ 83 (375)
.+..++.|.+.|+.++...+ ++.|++++.|-+|++|+...+ -+..++..|.+.|.|+++ .++...+|+|+-|+.|.
T Consensus 65 ~~asme~HsDWVNDiiL~~~-~~tlIS~SsDtTVK~W~~~~~~~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~If 143 (735)
T KOG0308|consen 65 YIASMEHHSDWVNDIILCGN-GKTLISASSDTTVKVWNAHKDNTFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIF 143 (735)
T ss_pred hhhhhhhhHhHHhhHHhhcC-CCceEEecCCceEEEeecccCcchhHhhhhcccchheeeeecccCceeEEecCCCccEE
Confidence 36778899999999999988 889999999999999999887 568889999999999999 78888999999999999
Q ss_pred EEECCCCCc-------cccccccc-CCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCceeeeeEecCcccceeEEEEe
Q 017194 84 SFDVHMPAS-------WRPLESYN-YNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFI 155 (375)
Q Consensus 84 iwd~~~~~~-------~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~ 155 (375)
+||+.++.. ......+. ++...|.+++.++.+..|++|+..+.+++||.++++.+..++ +|+..|.++..+
T Consensus 144 lWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimkLr-GHTdNVr~ll~~ 222 (735)
T KOG0308|consen 144 LWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLR-GHTDNVRVLLVN 222 (735)
T ss_pred EEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCcccceEEeccccccceeeee-ccccceEEEEEc
Confidence 999997632 11222333 778899999999999999999999999999999999999999 999999999999
Q ss_pred eCCCcEEEEeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEE
Q 017194 156 PWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVI 235 (375)
Q Consensus 156 ~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~ 235 (375)
++|. .++++++||+|++||+...+++.++..+ ...+.++..+| +-..+++|+.||.|..=
T Consensus 223 dDGt-~~ls~sSDgtIrlWdLgqQrCl~T~~vH-------------~e~VWaL~~~~------sf~~vYsG~rd~~i~~T 282 (735)
T KOG0308|consen 223 DDGT-RLLSASSDGTIRLWDLGQQRCLATYIVH-------------KEGVWALQSSP------SFTHVYSGGRDGNIYRT 282 (735)
T ss_pred CCCC-eEeecCCCceEEeeeccccceeeeEEec-------------cCceEEEeeCC------CcceEEecCCCCcEEec
Confidence 9999 7999999999999999999999998765 66799999998 78999999999999999
Q ss_pred eCCCc
Q 017194 236 NIESE 240 (375)
Q Consensus 236 d~~~~ 240 (375)
|+++.
T Consensus 283 dl~n~ 287 (735)
T KOG0308|consen 283 DLRNP 287 (735)
T ss_pred ccCCc
Confidence 99974
No 109
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.98 E-value=6.2e-29 Score=210.76 Aligned_cols=351 Identities=13% Similarity=0.172 Sum_probs=248.2
Q ss_pred CceeEEEEecCCCCEEEEeCCCCcEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEEcCCCeEEEEECCCCCcccc
Q 017194 16 ATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRP 95 (375)
Q Consensus 16 ~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~ 95 (375)
+.|+++.--+..-+.++.|+.+|.++||++++++.+.+++++...|+++.=+|--..++.|..+|+|.+++++.++.+..
T Consensus 160 ~~Ital~HP~TYLNKIvvGs~~G~lql~Nvrt~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~s 239 (910)
T KOG1539|consen 160 DFITALLHPSTYLNKIVVGSSQGRLQLWNVRTGKVVYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILMS 239 (910)
T ss_pred CceeeEecchhheeeEEEeecCCcEEEEEeccCcEEEEecccccceeEeccCCcceEEEEeccCceEEEEEcccCcEEEE
Confidence 33887654333335688999999999999999999999999999999999999888999999999999999998765554
Q ss_pred cccccCCCcceeEEEEcCCCCe-EEEEeCCCcEEEEeCcCceeeeeEecCcccceeEEEEeeCCCcEEEEeecCCeEEEe
Q 017194 96 LESYNYNKEEINQIVCNPKSSF-LACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMW 174 (375)
Q Consensus 96 ~~~~~~~~~~v~~~~~~~~~~~-l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~w 174 (375)
++. ..++|++++|..||+. +++|+..|.+.+||++..+.+..++..|.+.|....|.|..+ ++++++.|..+++|
T Consensus 240 Fk~---d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~ep-Vl~ta~~DnSlk~~ 315 (910)
T KOG1539|consen 240 FKQ---DWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEP-VLVTAGADNSLKVW 315 (910)
T ss_pred EEc---cccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCc-eEeeccCCCceeEE
Confidence 443 2589999999999876 566777799999999998888777768989999999999988 89999999988877
Q ss_pred eCCCCCc---ceEEecCC---------------------CC------------CCCCCC----------------cccCC
Q 017194 175 DFSKGRP---NKIVNFGL---------------------PE------------NNGNAG----------------QCYNP 202 (375)
Q Consensus 175 d~~~~~~---~~~~~~~~---------------------~~------------~~~~~~----------------~~~~~ 202 (375)
=.+++.- +-+...++ .+ ...... .-..-
T Consensus 316 vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~ 395 (910)
T KOG1539|consen 316 VFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKL 395 (910)
T ss_pred EeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcC
Confidence 5553321 11111110 00 000000 00001
Q ss_pred CceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCccee-eccccc----CCCCCCceeecccccceee---eeeeec
Q 017194 203 AFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNI-SRSKST----TKPLKGSQSTSKVNIRDAE---MEILDQ 274 (375)
Q Consensus 203 ~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~-~~~~~~----~~~~~~~~~~s~~g~~~~~---~~~~~~ 274 (375)
.+|..+++.... .....+.+++--.+..++.|+.+....- ..+... ......+++.++.|++... .|..+.
T Consensus 396 p~i~~fa~~~~R-E~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~ 474 (910)
T KOG1539|consen 396 PPIVEFAFENAR-EKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDR 474 (910)
T ss_pred Ccceeeecccch-hhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEE
Confidence 122222222110 0001234444445556777777654331 111111 2344567788888887765 344444
Q ss_pred CCcceeEeeeee---cCCCccEEEEEEeecCCCCcEEEEecCCCeEEEEeCCCceeee----------------------
Q 017194 275 SGGKRLHLDYSV---GGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQ---------------------- 329 (375)
Q Consensus 275 ~~~~~~~~~~~~---~~~~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~---------------------- 329 (375)
.+.........+ ..|..+|+.++.. .-++.+++++.+|.+++||........
T Consensus 475 fNmQSGi~r~sf~~~~ah~~~V~gla~D---~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~ 551 (910)
T KOG1539|consen 475 FNMQSGIHRKSFGDSPAHKGEVTGLAVD---GTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAI 551 (910)
T ss_pred EEcccCeeecccccCccccCceeEEEec---CCCceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhh
Confidence 444444444445 5899999999998 788899999999999999998765221
Q ss_pred ----------ecchhhhhhhhcccccceeeeeecCCCCCcEEEeeCCCeEEEEecC
Q 017194 330 ----------TSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSIS 375 (375)
Q Consensus 330 ----------~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~iw~~~ 375 (375)
.....++++.+.+|++.|++++|+| ||++|++++.|++|++||+.
T Consensus 552 ~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~-DgrWlisasmD~tIr~wDlp 606 (910)
T KOG1539|consen 552 ALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSP-DGRWLISASMDSTIRTWDLP 606 (910)
T ss_pred hcCceeEEEEEchhhhhhHHhhccccceeeeEeCC-CCcEEEEeecCCcEEEEecc
Confidence 2234567888999999999999999 99999999999999999984
No 110
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.98 E-value=2.6e-31 Score=193.88 Aligned_cols=261 Identities=15% Similarity=0.117 Sum_probs=207.1
Q ss_pred eecCccEEEEEEeCCCCeEEEEcCCCeEEEEECCCCCcccccccccCCCcceeEEEEcC--CCCeEEEEeCCCcEEEEeC
Q 017194 55 DVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNP--KSSFLACADDGGDVKIIDI 132 (375)
Q Consensus 55 ~~~~~~v~~l~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~iwd~ 132 (375)
..|++-|..+...--|++|++++.|++|+|+..+.+.....+..+.+|.++|..++|.. .|.+||+++.||.|.||.-
T Consensus 8 t~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke 87 (299)
T KOG1332|consen 8 TQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKE 87 (299)
T ss_pred hhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEec
Confidence 45888888888877899999999999999999998776788899999999999999976 7899999999999999998
Q ss_pred cCce--eeeeEecCcccceeEEEEeeCCC-cEEEEeecCCeEEEeeCCCC--CcceEEecCCCCCCCCCCcccCCCceeE
Q 017194 133 RQHC--LYKSLRAGHSSICSSVQFIPWKP-WEVISGGLDSKLVMWDFSKG--RPNKIVNFGLPENNGNAGQCYNPAFVHA 207 (375)
Q Consensus 133 ~~~~--~~~~~~~~~~~~v~~~~~~~~~~-~~l~~~~~d~~i~~wd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 207 (375)
++++ ...... .|...|++++|.|.+- .+|++++.||.|.+.+.+.. -....+... |+..+++
T Consensus 88 ~~g~w~k~~e~~-~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~a------------H~~Gvns 154 (299)
T KOG1332|consen 88 ENGRWTKAYEHA-AHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFA------------HEIGVNS 154 (299)
T ss_pred CCCchhhhhhhh-hhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhc------------cccccce
Confidence 7763 344555 7999999999999763 37889999999999998764 222223323 6788999
Q ss_pred EeecCCcccc--------CCCCEEEEEecCCcEEEEeCCCcceeecccccCCCCCCceeecccccceeeeeeeecCCcce
Q 017194 208 IAIPDADMLD--------KTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKR 279 (375)
Q Consensus 208 ~~~~~~~~~~--------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~ 279 (375)
+++.|..... ..-+.|++|+.|+.|+||+...+ .
T Consensus 155 Vswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~--------------------------------------~ 196 (299)
T KOG1332|consen 155 VSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSD--------------------------------------S 196 (299)
T ss_pred eeecCcCCCccccccCcccccceeeccCCccceeeeecCCc--------------------------------------c
Confidence 9999852210 01267999999999999999863 2
Q ss_pred eEeeeeecCCCccEEEEEEeecC-CCCcEEEEecCCCeEEEEeCCCceeeeecchhhhhhhhcccccceeeeeecCCCCC
Q 017194 280 LHLDYSVGGHTAAASCVAFSMFG-ERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESE 358 (375)
Q Consensus 280 ~~~~~~~~~~~~~v~~~~~s~~~-~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 358 (375)
......+.+|.+.|+.++|.|.. -...+||+++.||++.||........ .....+......+..+.|+. .|+
T Consensus 197 w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~------wk~tll~~f~~~~w~vSWS~-sGn 269 (299)
T KOG1332|consen 197 WKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEP------WKKTLLEEFPDVVWRVSWSL-SGN 269 (299)
T ss_pred hhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCc------ccccccccCCcceEEEEEec-ccc
Confidence 23344689999999999999521 11258999999999999987743211 12223344678899999999 999
Q ss_pred cEEEeeCCCeEEEEe
Q 017194 359 NLVVCDTSKVVKVYS 373 (375)
Q Consensus 359 ~l~s~~~dg~v~iw~ 373 (375)
.|+.++.|+.|.+|.
T Consensus 270 ~LaVs~GdNkvtlwk 284 (299)
T KOG1332|consen 270 ILAVSGGDNKVTLWK 284 (299)
T ss_pred EEEEecCCcEEEEEE
Confidence 999999999999996
No 111
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.98 E-value=1.7e-30 Score=208.92 Aligned_cols=259 Identities=18% Similarity=0.256 Sum_probs=196.8
Q ss_pred eeEeeecCccEEEEEEeCCCCeEEEEcCCCeEEEEECCCCC-ccccccccc-CCCcceeEEEEcCCCCeEEEEeCCCcEE
Q 017194 51 QLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPA-SWRPLESYN-YNKEEINQIVCNPKSSFLACADDGGDVK 128 (375)
Q Consensus 51 ~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i~iwd~~~~~-~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 128 (375)
...+++|+..|.++++.|.|..|++|+.|..|++||+.... ..+.++.+. .....|.+++|++.+..|++.+.....+
T Consensus 160 Ei~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqak 239 (641)
T KOG0772|consen 160 EIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQAK 239 (641)
T ss_pred eEeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCccee
Confidence 45567789999999999999999999999999999987421 111222221 2245799999999999999999889999
Q ss_pred EEeCcCceeeee------------EecCcccceeEEEEeeCCCcEEEEeecCCeEEEeeCCCCC-cceEEecCCCCCCCC
Q 017194 129 IIDIRQHCLYKS------------LRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGR-PNKIVNFGLPENNGN 195 (375)
Q Consensus 129 iwd~~~~~~~~~------------~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~-~~~~~~~~~~~~~~~ 195 (375)
++|-...+.... -+ +|...+++.+|+|..+..|++++.||++++||++..+ .+..++.. +.
T Consensus 240 l~DRdG~~~~e~~KGDQYI~Dm~nTK-GHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k-~~---- 313 (641)
T KOG0772|consen 240 LLDRDGFEIVEFSKGDQYIRDMYNTK-GHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTK-PA---- 313 (641)
T ss_pred EEccCCceeeeeeccchhhhhhhccC-CceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeec-cC----
Confidence 999654433322 24 8999999999999998889999999999999998654 33334321 10
Q ss_pred CCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCcceeecccccCCCCCCceeecccccceeeeeeeecC
Q 017194 196 AGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQS 275 (375)
Q Consensus 196 ~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~ 275 (375)
......+++.+|+| +++++|+|+.||.|.+|+.......
T Consensus 314 ---~g~Rv~~tsC~~nr------dg~~iAagc~DGSIQ~W~~~~~~v~-------------------------------- 352 (641)
T KOG0772|consen 314 ---GGKRVPVTSCAWNR------DGKLIAAGCLDGSIQIWDKGSRTVR-------------------------------- 352 (641)
T ss_pred ---CCcccCceeeecCC------CcchhhhcccCCceeeeecCCcccc--------------------------------
Confidence 01235678999999 8999999999999999998652111
Q ss_pred CcceeEeeeeecCCCc--cEEEEEEeecCCCCcEEEEecCCCeEEEEeCCCceeeeecchhhhhhhhccc--ccceeeee
Q 017194 276 GGKRLHLDYSVGGHTA--AASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINL--NKKVNWLC 351 (375)
Q Consensus 276 ~~~~~~~~~~~~~~~~--~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~ 351 (375)
.....-.+|.. .|+++.|| +||++|++-+.|+++++||++..+ +.+....+- ..+-+.++
T Consensus 353 -----p~~~vk~AH~~g~~Itsi~FS---~dg~~LlSRg~D~tLKvWDLrq~k--------kpL~~~tgL~t~~~~tdc~ 416 (641)
T KOG0772|consen 353 -----PVMKVKDAHLPGQDITSISFS---YDGNYLLSRGFDDTLKVWDLRQFK--------KPLNVRTGLPTPFPGTDCC 416 (641)
T ss_pred -----cceEeeeccCCCCceeEEEec---cccchhhhccCCCceeeeeccccc--------cchhhhcCCCccCCCCccc
Confidence 11223346655 89999999 999999999999999999999986 445444443 34567889
Q ss_pred ecCCCCCcEEEee------CCCeEEEEe
Q 017194 352 TTPTESENLVVCD------TSKVVKVYS 373 (375)
Q Consensus 352 ~~~~~~~~l~s~~------~dg~v~iw~ 373 (375)
|+| +.++|++|. ..|.+.+||
T Consensus 417 FSP-d~kli~TGtS~~~~~~~g~L~f~d 443 (641)
T KOG0772|consen 417 FSP-DDKLILTGTSAPNGMTAGTLFFFD 443 (641)
T ss_pred cCC-CceEEEecccccCCCCCceEEEEe
Confidence 999 888999875 346677776
No 112
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.98 E-value=2.4e-29 Score=215.49 Aligned_cols=277 Identities=17% Similarity=0.212 Sum_probs=225.1
Q ss_pred ecCCCceeEEEEecCCCCEEEEeCCCCcEEEEecccC-ceeeEeeecCccEEEEEEeCCCCeEEEEcCCCeEEEEECCCC
Q 017194 12 RGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSK-DVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMP 90 (375)
Q Consensus 12 ~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~-~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i~iwd~~~~ 90 (375)
.+|+..-+.++|.|+ |++|++++.||.|++|+...- +...++..+...|.+++-. +.+|++++.+++|.+|.+..+
T Consensus 10 yaht~G~t~i~~d~~-gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~--s~~f~~~s~~~tv~~y~fps~ 86 (933)
T KOG1274|consen 10 YAHTGGLTLICYDPD-GEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACY--SNHFLTGSEQNTVLRYKFPSG 86 (933)
T ss_pred hhccCceEEEEEcCC-CCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeec--ccceEEeeccceEEEeeCCCC
Confidence 368899999999999 889999999999999998766 5555565577888887764 458999999999999999987
Q ss_pred CcccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCceeeeeEecCcccceeEEEEeeCCCcEEEEeecCCe
Q 017194 91 ASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSK 170 (375)
Q Consensus 91 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~ 170 (375)
.....+..+ .-++.+++|+.+|++++.|+.|-.|++.+..+......++ +|.++|.++.|+|+++ +||+.+.||.
T Consensus 87 ~~~~iL~Rf---tlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lr-gh~apVl~l~~~p~~~-fLAvss~dG~ 161 (933)
T KOG1274|consen 87 EEDTILARF---TLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLR-GHDAPVLQLSYDPKGN-FLAVSSCDGK 161 (933)
T ss_pred Cccceeeee---eccceEEEEecCCcEEEeecCceeEEEEeccccchheeec-ccCCceeeeeEcCCCC-EEEEEecCce
Confidence 665566665 6789999999999999999999999999999999999999 9999999999999999 8999999999
Q ss_pred EEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCcceeecccccC
Q 017194 171 LVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTT 250 (375)
Q Consensus 171 i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~ 250 (375)
|++||+.++.+...+..-.+..... ....+..++|+| ++..+++...|+.|++|+..+......
T Consensus 162 v~iw~~~~~~~~~tl~~v~k~n~~~-----~s~i~~~~aW~P------k~g~la~~~~d~~Vkvy~r~~we~~f~----- 225 (933)
T KOG1274|consen 162 VQIWDLQDGILSKTLTGVDKDNEFI-----LSRICTRLAWHP------KGGTLAVPPVDNTVKVYSRKGWELQFK----- 225 (933)
T ss_pred EEEEEcccchhhhhcccCCcccccc-----ccceeeeeeecC------CCCeEEeeccCCeEEEEccCCceehee-----
Confidence 9999999998877776332222111 134677899999 788888899999999999987532211
Q ss_pred CCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEecCCCeEEEEeCCCceeeee
Q 017194 251 KPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQT 330 (375)
Q Consensus 251 ~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 330 (375)
.....+...+..++|+ |.|+|||+++.||.|.|||.++.
T Consensus 226 ---------------------------------Lr~~~~ss~~~~~~ws---PnG~YiAAs~~~g~I~vWnv~t~----- 264 (933)
T KOG1274|consen 226 ---------------------------------LRDKLSSSKFSDLQWS---PNGKYIAASTLDGQILVWNVDTH----- 264 (933)
T ss_pred ---------------------------------ecccccccceEEEEEc---CCCcEEeeeccCCcEEEEecccc-----
Confidence 1222344558999999 99999999999999999999984
Q ss_pred cchhhhhhhhcccccceeeeeecCCCCCcEEE
Q 017194 331 SINNDLLIKNINLNKKVNWLCTTPTESENLVV 362 (375)
Q Consensus 331 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s 362 (375)
+. ......|.+++|.| +..-|-.
T Consensus 265 ----~~----~~~~~~Vc~~aw~p-~~n~it~ 287 (933)
T KOG1274|consen 265 ----ER----HEFKRAVCCEAWKP-NANAITL 287 (933)
T ss_pred ----hh----ccccceeEEEecCC-CCCeeEE
Confidence 22 23346789999988 5554433
No 113
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.97 E-value=1.2e-30 Score=204.07 Aligned_cols=248 Identities=17% Similarity=0.176 Sum_probs=206.9
Q ss_pred CCCeeeecCCCceeEEEEecCCCCEEEEeCCCCcEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEEcCCCeEEEE
Q 017194 6 AKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSF 85 (375)
Q Consensus 6 ~~~~~l~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i~iw 85 (375)
..+.+|.|-.++|+.+.|.++ +..+++++.|+.+++|++...+...++.+|.+.|+++.|......+++|+.|.+|++|
T Consensus 210 ~~~~tLaGs~g~it~~d~d~~-~~~~iAas~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~W 288 (459)
T KOG0288|consen 210 ELISTLAGSLGNITSIDFDSD-NKHVIAASNDKNLRLWNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLW 288 (459)
T ss_pred hhhhhhhccCCCcceeeecCC-CceEEeecCCCceeeeeccchhhhhhhcccccceeeehhhccccceeeccccchhhhh
Confidence 356778888899999999999 7899999999999999999999999999999999999998777679999999999999
Q ss_pred ECCCCCcccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCceeeeeEecCcccceeEEEEeeCCCcEEEEe
Q 017194 86 DVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISG 165 (375)
Q Consensus 86 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~ 165 (375)
|+....+.+.+-. ...+..++.+ ...+++|..|+.|++||+++........ .+ +.|+++..++++. .++++
T Consensus 289 Dl~k~~C~kt~l~----~S~cnDI~~~--~~~~~SgH~DkkvRfwD~Rs~~~~~sv~-~g-g~vtSl~ls~~g~-~lLss 359 (459)
T KOG0288|consen 289 DLQKAYCSKTVLP----GSQCNDIVCS--ISDVISGHFDKKVRFWDIRSADKTRSVP-LG-GRVTSLDLSMDGL-ELLSS 359 (459)
T ss_pred hhhhhheeccccc----cccccceEec--ceeeeecccccceEEEeccCCceeeEee-cC-cceeeEeeccCCe-EEeee
Confidence 9987544443332 4566777766 4578899999999999999999998888 54 4999999999998 68888
Q ss_pred ecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCcceeec
Q 017194 166 GLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISR 245 (375)
Q Consensus 166 ~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~ 245 (375)
+.|.++.+.|+++.+....+... ........+.+.|+| ++.++++|+.||.|+||++.+++.
T Consensus 360 sRDdtl~viDlRt~eI~~~~sA~---------g~k~asDwtrvvfSp------d~~YvaAGS~dgsv~iW~v~tgKl--- 421 (459)
T KOG0288|consen 360 SRDDTLKVIDLRTKEIRQTFSAE---------GFKCASDWTRVVFSP------DGSYVAAGSADGSVYIWSVFTGKL--- 421 (459)
T ss_pred cCCCceeeeecccccEEEEeecc---------ccccccccceeEECC------CCceeeeccCCCcEEEEEccCceE---
Confidence 99999999999988877776533 111123478899999 899999999999999999998632
Q ss_pred ccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCC--CccEEEEEEeecCCCCcEEEEecCCCeEEEEe
Q 017194 246 SKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGH--TAAASCVAFSMFGERGKYLISGGNDKLVKVWD 321 (375)
Q Consensus 246 ~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd 321 (375)
...+... ...|++++|+ |.|..|++++.++.+.+|.
T Consensus 422 -------------------------------------E~~l~~s~s~~aI~s~~W~---~sG~~Llsadk~~~v~lW~ 459 (459)
T KOG0288|consen 422 -------------------------------------EKVLSLSTSNAAITSLSWN---PSGSGLLSADKQKAVTLWT 459 (459)
T ss_pred -------------------------------------EEEeccCCCCcceEEEEEc---CCCchhhcccCCcceEecC
Confidence 2233322 2369999999 8999999999999999993
No 114
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.97 E-value=1.3e-30 Score=196.97 Aligned_cols=259 Identities=17% Similarity=0.229 Sum_probs=208.1
Q ss_pred CCCeeeecCCCceeEEEEecCCCCEEEEeCCCCcEEEEecccCcee---eEeeecCccEEEEEEeCCCCeEEEEcCCCeE
Q 017194 6 AKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQ---LVTDVGNGPVTSLCFKSGNEDIIYVSSGKEV 82 (375)
Q Consensus 6 ~~~~~l~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~---~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i 82 (375)
-.+++|-.|.++|+++.|+|. ...|++|+.|++|+++|+.+.... +.++ ...+|.++.|+|.|.+|+.|.....+
T Consensus 163 PvIRTlYDH~devn~l~FHPr-e~ILiS~srD~tvKlFDfsK~saKrA~K~~q-d~~~vrsiSfHPsGefllvgTdHp~~ 240 (430)
T KOG0640|consen 163 PVIRTLYDHVDEVNDLDFHPR-ETILISGSRDNTVKLFDFSKTSAKRAFKVFQ-DTEPVRSISFHPSGEFLLVGTDHPTL 240 (430)
T ss_pred ceEeehhhccCcccceeecch-hheEEeccCCCeEEEEecccHHHHHHHHHhh-ccceeeeEeecCCCceEEEecCCCce
Confidence 457889999999999999999 899999999999999999765432 2333 46789999999999999999988999
Q ss_pred EEEECCCCCcccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCceeeeeEecCcc-cceeEEEEeeCCCcE
Q 017194 83 KSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHS-SICSSVQFIPWKPWE 161 (375)
Q Consensus 83 ~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~ 161 (375)
++||+++-++...-..-..|.+.|+++.+++.+++.++++.||.|++||--+++++.++...|. ..|.+..|..+++ +
T Consensus 241 rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~k-y 319 (430)
T KOG0640|consen 241 RLYDVNTYQCFVSANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGK-Y 319 (430)
T ss_pred eEEeccceeEeeecCcccccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCe-E
Confidence 9999998766655555667899999999999999999999999999999989999998876675 4789999999999 6
Q ss_pred EEEeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEe-cCCcEEEEeCCCc
Q 017194 162 VISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAK-GDGVVDVINIESE 240 (375)
Q Consensus 162 l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~ 240 (375)
+++.+.|..+++|.+.+++++.++.-. +.++.. ..-+...|+. ...+++.-. ..+.+.-||.++.
T Consensus 320 iLsSG~DS~vkLWEi~t~R~l~~YtGA-----g~tgrq---~~rtqAvFNh------tEdyVl~pDEas~slcsWdaRta 385 (430)
T KOG0640|consen 320 ILSSGKDSTVKLWEISTGRMLKEYTGA-----GTTGRQ---KHRTQAVFNH------TEDYVLFPDEASNSLCSWDARTA 385 (430)
T ss_pred EeecCCcceeeeeeecCCceEEEEecC-----Ccccch---hhhhhhhhcC------ccceEEccccccCceeeccccch
Confidence 999999999999999999999888632 001111 1112233433 455555444 3578899999974
Q ss_pred ceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEecCCCeEEEE
Q 017194 241 LNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVW 320 (375)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iw 320 (375)
... ..--.+|++.++.+.-| |.+.-+++|+.|..+++|
T Consensus 386 dr~---------------------------------------~l~slgHn~a~R~i~HS---P~~p~FmTcsdD~raRFW 423 (430)
T KOG0640|consen 386 DRV---------------------------------------ALLSLGHNGAVRWIVHS---PVEPAFMTCSDDFRARFW 423 (430)
T ss_pred hhh---------------------------------------hhcccCCCCCceEEEeC---CCCCceeeecccceeeee
Confidence 321 11234899999999999 899999999999999999
Q ss_pred eCC
Q 017194 321 DCS 323 (375)
Q Consensus 321 d~~ 323 (375)
--+
T Consensus 424 yrr 426 (430)
T KOG0640|consen 424 YRR 426 (430)
T ss_pred eec
Confidence 654
No 115
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.97 E-value=3.8e-30 Score=210.49 Aligned_cols=299 Identities=16% Similarity=0.189 Sum_probs=232.1
Q ss_pred CCeeeecCCCceeEEEEecCCCCEEEEeCCCCcEEEEecccCceeeEeeecCccEEEEEEeCCCCe-EEEEcCCCeEEEE
Q 017194 7 KPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNED-IIYVSSGKEVKSF 85 (375)
Q Consensus 7 ~~~~l~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~-l~~~~~d~~i~iw 85 (375)
+-..++||++.|.|+...|. |.+||+|+.||+|+||.+.+|.++.++.. .+.|.+++|+|.+.. +++++.+..+.|-
T Consensus 392 ~~lvyrGHtg~Vr~iSvdp~-G~wlasGsdDGtvriWEi~TgRcvr~~~~-d~~I~~vaw~P~~~~~vLAvA~~~~~~iv 469 (733)
T KOG0650|consen 392 CALVYRGHTGLVRSISVDPS-GEWLASGSDDGTVRIWEIATGRCVRTVQF-DSEIRSVAWNPLSDLCVLAVAVGECVLIV 469 (733)
T ss_pred eeeeEeccCCeEEEEEecCC-cceeeecCCCCcEEEEEeecceEEEEEee-cceeEEEEecCCCCceeEEEEecCceEEe
Confidence 34567899999999999998 99999999999999999999999999885 679999999997653 3333334445555
Q ss_pred ECCCCCcc----------------------------------cccccccCCCcceeEEEEcCCCCeEEEEeC---CCcEE
Q 017194 86 DVHMPASW----------------------------------RPLESYNYNKEEINQIVCNPKSSFLACADD---GGDVK 128 (375)
Q Consensus 86 d~~~~~~~----------------------------------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---dg~i~ 128 (375)
+..-|..+ .-+...-.|...|..+.|+..|.||++... ...|.
T Consensus 470 np~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~Vl 549 (733)
T KOG0650|consen 470 NPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVL 549 (733)
T ss_pred CccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEE
Confidence 43322100 001111236778999999999999998764 35689
Q ss_pred EEeCcCceeeeeEecCcccceeEEEEeeCCCcEEEEeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEE
Q 017194 129 IIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAI 208 (375)
Q Consensus 129 iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 208 (375)
|+++...+....|+ ...+.|.++.|+|... +|++++. ..|++||+..+..++.+..+ ...|.++
T Consensus 550 iHQLSK~~sQ~PF~-kskG~vq~v~FHPs~p-~lfVaTq-~~vRiYdL~kqelvKkL~tg-------------~kwiS~m 613 (733)
T KOG0650|consen 550 IHQLSKRKSQSPFR-KSKGLVQRVKFHPSKP-YLFVATQ-RSVRIYDLSKQELVKKLLTG-------------SKWISSM 613 (733)
T ss_pred EEecccccccCchh-hcCCceeEEEecCCCc-eEEEEec-cceEEEehhHHHHHHHHhcC-------------Ceeeeee
Confidence 99998877777776 5678899999999998 5666654 57999999988887777644 4689999
Q ss_pred eecCCccccCCCCEEEEEecCCcEEEEeCCCcceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecC
Q 017194 209 AIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGG 288 (375)
Q Consensus 209 ~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (375)
+++| .|..|++|+.|+.+..||+.-.. +..+++.-
T Consensus 614 sihp------~GDnli~gs~d~k~~WfDldlss---------------------------------------kPyk~lr~ 648 (733)
T KOG0650|consen 614 SIHP------NGDNLILGSYDKKMCWFDLDLSS---------------------------------------KPYKTLRL 648 (733)
T ss_pred eecC------CCCeEEEecCCCeeEEEEcccCc---------------------------------------chhHHhhh
Confidence 9999 79999999999999999998532 34557888
Q ss_pred CCccEEEEEEeecCCCCcEEEEecCCCeEEEEeCCCceeeeecchhhhhhhhcccccc----eeeeeecCCCCCcEEEee
Q 017194 289 HTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKK----VNWLCTTPTESENLVVCD 364 (375)
Q Consensus 289 ~~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~----v~~~~~~~~~~~~l~s~~ 364 (375)
|...+++++|+ +.-.++++|+.||++.|+--.-.........--.++.+.+|... |....|+| ..-+|++++
T Consensus 649 H~~avr~Va~H---~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wHP-~qpWLfsAG 724 (733)
T KOG0650|consen 649 HEKAVRSVAFH---KRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIWHP-RQPWLFSAG 724 (733)
T ss_pred hhhhhhhhhhc---cccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCceeecccceEeecccC-CCceEEecC
Confidence 99999999999 78889999999999999864332211111111345677788776 99999999 777999999
Q ss_pred CCCeEEEE
Q 017194 365 TSKVVKVY 372 (375)
Q Consensus 365 ~dg~v~iw 372 (375)
.||+|++|
T Consensus 725 Ad~tirlf 732 (733)
T KOG0650|consen 725 ADGTIRLF 732 (733)
T ss_pred CCceEEee
Confidence 99999998
No 116
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=6.7e-30 Score=193.88 Aligned_cols=259 Identities=15% Similarity=0.223 Sum_probs=215.8
Q ss_pred cCCCCCeeeecCCCceeEEEEecCCCCEEEEeCCCCcEEEEecc------c--------C--------------------
Q 017194 3 DAEAKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLR------S--------K-------------------- 48 (375)
Q Consensus 3 ~~~~~~~~l~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~------~--------~-------------------- 48 (375)
++++++.++.||.+.|+|+.|++. +.++++++.|++-.||... + +
T Consensus 178 Esg~CL~~Y~GH~GSVNsikfh~s-~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~s 256 (481)
T KOG0300|consen 178 ESGACLATYTGHTGSVNSIKFHNS-GLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKS 256 (481)
T ss_pred ccccceeeecccccceeeEEeccc-cceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhccccccccccccccc
Confidence 578889999999999999999998 8999999999999999721 0 0
Q ss_pred ------ceeeEeeecCccEEEEEEeCCCCeEEEEcCCCeEEEEECCCCCcccccccccCCCcceeEEEEcCCCCeEEEEe
Q 017194 49 ------DVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACAD 122 (375)
Q Consensus 49 ------~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 122 (375)
.++..+.+|...|.+..|...|+.+++++.|.+..+||++++ ..+..+.+|....+.++-+|..+++++.+
T Consensus 257 D~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtg---e~v~~LtGHd~ELtHcstHptQrLVvTsS 333 (481)
T KOG0300|consen 257 DGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVETG---EVVNILTGHDSELTHCSTHPTQRLVVTSS 333 (481)
T ss_pred CCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccceeeeeccC---ceeccccCcchhccccccCCcceEEEEec
Confidence 025567789999999999999999999999999999999986 55666778899999999999999999999
Q ss_pred CCCcEEEEeCcCc-eeeeeEecCcccceeEEEEeeCCCcEEEEeecCCeEEEeeCCCC-CcceEEecCCCCCCCCCCccc
Q 017194 123 DGGDVKIIDIRQH-CLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKG-RPNKIVNFGLPENNGNAGQCY 200 (375)
Q Consensus 123 ~dg~i~iwd~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~-~~~~~~~~~~~~~~~~~~~~~ 200 (375)
.|.+.++||++.. ..+..|+ +|...|++..|..+.+ +++|+.|.+|++||+++. .++.++...
T Consensus 334 rDtTFRLWDFReaI~sV~VFQ-GHtdtVTS~vF~~dd~--vVSgSDDrTvKvWdLrNMRsplATIRtd------------ 398 (481)
T KOG0300|consen 334 RDTTFRLWDFREAIQSVAVFQ-GHTDTVTSVVFNTDDR--VVSGSDDRTVKVWDLRNMRSPLATIRTD------------ 398 (481)
T ss_pred cCceeEeccchhhcceeeeec-ccccceeEEEEecCCc--eeecCCCceEEEeeeccccCcceeeecC------------
Confidence 9999999999843 4577888 9999999999998874 999999999999999875 466777643
Q ss_pred CCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCcceeecccccCCCCCCceeecccccceeeeeeeecCCccee
Q 017194 201 NPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRL 280 (375)
Q Consensus 201 ~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~ 280 (375)
.+++.++++. .+..++.-..+..|++||+...+....
T Consensus 399 --S~~NRvavs~------g~~iIAiPhDNRqvRlfDlnG~RlaRl----------------------------------- 435 (481)
T KOG0300|consen 399 --SPANRVAVSK------GHPIIAIPHDNRQVRLFDLNGNRLARL----------------------------------- 435 (481)
T ss_pred --CccceeEeec------CCceEEeccCCceEEEEecCCCccccC-----------------------------------
Confidence 7889999987 567888888889999999986432210
Q ss_pred EeeeeecCCCccEEEEEEeecCCCCcEEEEecCCCeEEEEeCCCc
Q 017194 281 HLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRF 325 (375)
Q Consensus 281 ~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd~~~~ 325 (375)
+...-.+|..-|.|++|..-+|- .-|++++.|..+.-|++...
T Consensus 436 -PrtsRqgHrRMV~c~AW~eehp~-cnLftcGFDR~v~gW~in~p 478 (481)
T KOG0300|consen 436 -PRTSRQGHRRMVTCCAWLEEHPA-CNLFTCGFDRMVAGWKINTP 478 (481)
T ss_pred -CcccccccceeeeeeeccccCcc-cccccccccceeeeeEeccc
Confidence 11144588999999999733232 35789999999999998875
No 117
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=2.7e-30 Score=217.22 Aligned_cols=284 Identities=15% Similarity=0.160 Sum_probs=221.4
Q ss_pred CceeEEEEecCCCCEEEEeCCCCcEEEEecccCcee----eEeee---cCccEEEEEEeC-CCCeEEEEcCCCeEEEEEC
Q 017194 16 ATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQ----LVTDV---GNGPVTSLCFKS-GNEDIIYVSSGKEVKSFDV 87 (375)
Q Consensus 16 ~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~----~~~~~---~~~~v~~l~~~~-~~~~l~~~~~d~~i~iwd~ 87 (375)
...+.+..+++ -..++.++.. .++||.+...... ..... -.-.+..+.|.. ..++|++++..|.|.+||+
T Consensus 40 ~~~nAIs~nr~-~~qiv~AGrs-~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~nG~i~vWdl 117 (839)
T KOG0269|consen 40 AKANAISVNRD-INQIVVAGRS-LLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCSTNGVISVWDL 117 (839)
T ss_pred cccceEeecCC-cceeEEeccc-ceeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheeecCCCcEEEEec
Confidence 45566777888 5677777764 7888887644321 11111 112345677763 4578999999999999999
Q ss_pred CCCCcccccccccCCCcceeEEEEcCC-CCeEEEEeCCCcEEEEeCcCceeeeeEecCcccceeEEEEeeCCCcEEEEee
Q 017194 88 HMPASWRPLESYNYNKEEINQIVCNPK-SSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGG 166 (375)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~ 166 (375)
......+.+..+..|+..+.++.|++. ..+|++|+.||+|++||++..+...++. +....|+.+.|+|...+.|+++.
T Consensus 118 nk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~-~nSESiRDV~fsp~~~~~F~s~~ 196 (839)
T KOG0269|consen 118 NKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFR-SNSESIRDVKFSPGYGNKFASIH 196 (839)
T ss_pred CccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeeccccccccc-ccchhhhceeeccCCCceEEEec
Confidence 865445667788889999999999995 4678999999999999999999999998 88889999999998877899999
Q ss_pred cCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCcceeecc
Q 017194 167 LDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRS 246 (375)
Q Consensus 167 ~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~ 246 (375)
+.|.+++||++........... |.++|.++.|+| ++.+||+|+.|+.|+|||+.+.+..
T Consensus 197 dsG~lqlWDlRqp~r~~~k~~A------------H~GpV~c~nwhP------nr~~lATGGRDK~vkiWd~t~~~~~--- 255 (839)
T KOG0269|consen 197 DSGYLQLWDLRQPDRCEKKLTA------------HNGPVLCLNWHP------NREWLATGGRDKMVKIWDMTDSRAK--- 255 (839)
T ss_pred CCceEEEeeccCchhHHHHhhc------------ccCceEEEeecC------CCceeeecCCCccEEEEeccCCCcc---
Confidence 9999999999976543332223 689999999999 8999999999999999999864211
Q ss_pred cccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCC-cEEEEecC--CCeEEEEeCC
Q 017194 247 KSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERG-KYLISGGN--DKLVKVWDCS 323 (375)
Q Consensus 247 ~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~-~~l~s~~~--dg~i~iwd~~ 323 (375)
.+.++. ...+|.+++|- |+. ..||+++. |-.|+|||++
T Consensus 256 -----------------------------------~~~tIn-Tiapv~rVkWR---P~~~~hLAtcsmv~dtsV~VWDvr 296 (839)
T KOG0269|consen 256 -----------------------------------PKHTIN-TIAPVGRVKWR---PARSYHLATCSMVVDTSVHVWDVR 296 (839)
T ss_pred -----------------------------------ceeEEe-ecceeeeeeec---cCccchhhhhhccccceEEEEeec
Confidence 111222 24689999999 554 45666654 8889999999
Q ss_pred CceeeeecchhhhhhhhcccccceeeeeecCCCCCcEEEeeCCCeEE
Q 017194 324 RFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVK 370 (375)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~ 370 (375)
... -+...+..|...++.++|-..|...|.+++.||.|.
T Consensus 297 RPY--------IP~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~ 335 (839)
T KOG0269|consen 297 RPY--------IPYATFLEHTDSVTGIAWDSGDRINLWSCSKDGTVL 335 (839)
T ss_pred ccc--------ccceeeeccCccccceeccCCCceeeEeecCccHHH
Confidence 874 345677889999999999877778899999999864
No 118
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.97 E-value=4e-29 Score=205.94 Aligned_cols=291 Identities=15% Similarity=0.164 Sum_probs=210.7
Q ss_pred EEEecC--CCCEEEEeCCCCcEEEEecccCce------eeEeeecCccEEEEEEeCCCCeEEEEcCCCeEEEEECCCCCc
Q 017194 21 CIASRD--RPGFVASSGEDGCICWFDLRSKDV------QLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPAS 92 (375)
Q Consensus 21 ~~~~~~--~~~~l~s~~~d~~i~iw~~~~~~~------~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i~iwd~~~~~~ 92 (375)
+.|++. ....||.+.+||.|.++|...... +.....|...|..+.|.|....|++++.|.++++||+++.+.
T Consensus 55 ~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l 134 (720)
T KOG0321|consen 55 DSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRL 134 (720)
T ss_pred ccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeecccee
Confidence 456543 245799999999999999875433 355668999999999999777899999999999999997654
Q ss_pred ccccccccCCCcceeEEEEcCCC-CeEEEEeCCCcEEEEeCcCce--------------------e-------eeeEecC
Q 017194 93 WRPLESYNYNKEEINQIVCNPKS-SFLACADDGGDVKIIDIRQHC--------------------L-------YKSLRAG 144 (375)
Q Consensus 93 ~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~--------------------~-------~~~~~~~ 144 (375)
. -...+.+|.+.|.+++|.|.+ ..|++|+.||.|.|||++... . +...+ .
T Consensus 135 ~-G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~k-A 212 (720)
T KOG0321|consen 135 V-GGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWK-A 212 (720)
T ss_pred e-cceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccc-c
Confidence 3 333577899999999999965 568899999999999987321 0 01111 2
Q ss_pred cccceeE---EEEeeCCCcEEEEeec-CCeEEEeeCCCCCcceEEecCCCCCCCCCCcccC---CCceeEEeecCCcccc
Q 017194 145 HSSICSS---VQFIPWKPWEVISGGL-DSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYN---PAFVHAIAIPDADMLD 217 (375)
Q Consensus 145 ~~~~v~~---~~~~~~~~~~l~~~~~-d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~v~~~~~~~~~~~~ 217 (375)
+...+.+ +.+..|.. .|++++. |+.|++||+++.......... .. .....+ ...+.++....
T Consensus 213 ~s~ti~ssvTvv~fkDe~-tlaSaga~D~~iKVWDLRk~~~~~r~ep~---~~--~~~~t~skrs~G~~nL~lDs----- 281 (720)
T KOG0321|consen 213 ASNTIFSSVTVVLFKDES-TLASAGAADSTIKVWDLRKNYTAYRQEPR---GS--DKYPTHSKRSVGQVNLILDS----- 281 (720)
T ss_pred ccCceeeeeEEEEEeccc-eeeeccCCCcceEEEeecccccccccCCC---cc--cCccCcccceeeeEEEEecC-----
Confidence 3334444 44555655 7888887 999999999986654443211 00 000011 23455666654
Q ss_pred CCCCEEEEEecCCcEEEEeCCCcceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCc---cEE
Q 017194 218 KTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTA---AAS 294 (375)
Q Consensus 218 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~v~ 294 (375)
.|.+|.+.+.|+.|++|++.+... ..+..+.++.. .+.
T Consensus 282 -sGt~L~AsCtD~sIy~ynm~s~s~--------------------------------------sP~~~~sg~~~~sf~vk 322 (720)
T KOG0321|consen 282 -SGTYLFASCTDNSIYFYNMRSLSI--------------------------------------SPVAEFSGKLNSSFYVK 322 (720)
T ss_pred -CCCeEEEEecCCcEEEEeccccCc--------------------------------------CchhhccCcccceeeee
Confidence 689999999999999999996321 11222222211 222
Q ss_pred EEEEeecCCCCcEEEEecCCCeEEEEeCCCceeeeecchhhhhhhhcccccceeeeeecCCCCCcEEEeeCCCeEEEEec
Q 017194 295 CVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSI 374 (375)
Q Consensus 295 ~~~~s~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~iw~~ 374 (375)
+ ..+ ||+.+|++|+.|...++|.+.+.+ .....+.+|.-.|++++|.|..-.-++++++|.++++|++
T Consensus 323 s-~lS---pd~~~l~SgSsd~~ayiw~vs~~e--------~~~~~l~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l 390 (720)
T KOG0321|consen 323 S-ELS---PDDCSLLSGSSDEQAYIWVVSSPE--------APPALLLGHTREVTTVRWLPSATTPVATCSDDFRVKIWRL 390 (720)
T ss_pred e-ecC---CCCceEeccCCCcceeeeeecCcc--------CChhhhhCcceEEEEEeeccccCCCceeeccCcceEEEec
Confidence 2 245 899999999999999999999986 5566888999999999999966667899999999999997
Q ss_pred C
Q 017194 375 S 375 (375)
Q Consensus 375 ~ 375 (375)
+
T Consensus 391 ~ 391 (720)
T KOG0321|consen 391 S 391 (720)
T ss_pred c
Confidence 3
No 119
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=9.1e-29 Score=186.60 Aligned_cols=278 Identities=13% Similarity=0.135 Sum_probs=205.9
Q ss_pred eecCccEEEEEEeCCCCeEEEEcCCCeEEEEECCC-CCcccccccccCCCcceeEEEEcC--CCCeEEEEeCCCcEEEEe
Q 017194 55 DVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHM-PASWRPLESYNYNKEEINQIVCNP--KSSFLACADDGGDVKIID 131 (375)
Q Consensus 55 ~~~~~~v~~l~~~~~~~~l~~~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~iwd 131 (375)
.+|.+-|.++.|.+.|+++++++.|++++|||.+. ...+......+.|.+.|..+.|.+ -|+.+|+++.|+++.||.
T Consensus 10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWE 89 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWE 89 (361)
T ss_pred cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeee
Confidence 35888999999999999999999999999999654 334566677888999999999976 489999999999999998
Q ss_pred CcCc---------eeeeeEecCcccceeEEEEeeCCC-cEEEEeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccC
Q 017194 132 IRQH---------CLYKSLRAGHSSICSSVQFIPWKP-WEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYN 201 (375)
Q Consensus 132 ~~~~---------~~~~~~~~~~~~~v~~~~~~~~~~-~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (375)
-... ....++. .....|+++.|.|... ..+++++.||.++||+....-.+....+...-..-......+
T Consensus 90 E~~~~~~~~~~~Wv~~ttl~-DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~ 168 (361)
T KOG2445|consen 90 EQEKSEEAHGRRWVRRTTLV-DSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKN 168 (361)
T ss_pred ecccccccccceeEEEEEee-cCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccc
Confidence 5211 2234555 6778999999999653 368999999999999987654444333221000000000012
Q ss_pred CCceeEEeecCCccccCCCCEEEEEecC-----CcEEEEeCCCcceeecccccCCCCCCceeecccccceeeeeeeecCC
Q 017194 202 PAFVHAIAIPDADMLDKTNKICVVAKGD-----GVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSG 276 (375)
Q Consensus 202 ~~~v~~~~~~~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~ 276 (375)
..+..++.|+|..+ ...+|++|+.+ +.++||.....
T Consensus 169 ~~~~~CvsWn~sr~---~~p~iAvgs~e~a~~~~~~~Iye~~e~------------------------------------ 209 (361)
T KOG2445|consen 169 KQPCFCVSWNPSRM---HEPLIAVGSDEDAPHLNKVKIYEYNEN------------------------------------ 209 (361)
T ss_pred cCcceEEeeccccc---cCceEEEEcccCCccccceEEEEecCC------------------------------------
Confidence 34667889988544 46788888876 57888877653
Q ss_pred cceeEeeeeecCCCccEEEEEEeec-CCCCcEEEEecCCCeEEEEeCCCceee-----------eecchhhhhhhhcccc
Q 017194 277 GKRLHLDYSVGGHTAAASCVAFSMF-GERGKYLISGGNDKLVKVWDCSRFQGV-----------QTSINNDLLIKNINLN 344 (375)
Q Consensus 277 ~~~~~~~~~~~~~~~~v~~~~~s~~-~~~~~~l~s~~~dg~i~iwd~~~~~~~-----------~~~~~~~~~~~~~~~~ 344 (375)
.++...+.++.+|..+|+.++|.|. +..-.+||+++.|| |+||++...... .....-+.+..+.+|.
T Consensus 210 ~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~ 288 (361)
T KOG2445|consen 210 GRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHN 288 (361)
T ss_pred cceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCC
Confidence 3455667788899999999999952 11235899999999 999999853211 0111224455678899
Q ss_pred cceeeeeecCCCCCcEEEeeCCCeEEEEec
Q 017194 345 KKVNWLCTTPTESENLVVCDTSKVVKVYSI 374 (375)
Q Consensus 345 ~~v~~~~~~~~~~~~l~s~~~dg~v~iw~~ 374 (375)
+.|..+.|+- .|..|++.+.||.||+|.-
T Consensus 289 ~~VWrv~wNm-tGtiLsStGdDG~VRLWka 317 (361)
T KOG2445|consen 289 GEVWRVRWNM-TGTILSSTGDDGCVRLWKA 317 (361)
T ss_pred CceEEEEEee-eeeEEeecCCCceeeehhh
Confidence 9999999998 8999999999999999963
No 120
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.97 E-value=2.5e-29 Score=219.24 Aligned_cols=259 Identities=14% Similarity=0.156 Sum_probs=209.2
Q ss_pred CCCeeeecCCCceeEEEEecCCCCEEEEeCCCCcEEEEeccc------------------CceeeEeeecCccEEEEEEe
Q 017194 6 AKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRS------------------KDVQLVTDVGNGPVTSLCFK 67 (375)
Q Consensus 6 ~~~~~l~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~------------------~~~~~~~~~~~~~v~~l~~~ 67 (375)
+.+.++..|.+.|+|+.|+|| |++||+|++|+.|.||.... .+....+.+|...|..++|+
T Consensus 60 k~l~~m~~h~~sv~CVR~S~d-G~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Ws 138 (942)
T KOG0973|consen 60 KHLCTMDDHDGSVNCVRFSPD-GSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWS 138 (942)
T ss_pred hhheeeccccCceeEEEECCC-CCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccC
Confidence 345677789999999999999 99999999999999999772 12467788999999999999
Q ss_pred CCCCeEEEEcCCCeEEEEECCCCCcccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCceeeeeEecCc--
Q 017194 68 SGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGH-- 145 (375)
Q Consensus 68 ~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-- 145 (375)
|++.+|++++.|++|.+||..+. +.++.+.+|.+.|..+.|.|-|++||+-+.|++|++|++.+....+.+. ++
T Consensus 139 p~~~~lvS~s~DnsViiwn~~tF---~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It-~pf~ 214 (942)
T KOG0973|consen 139 PDDSLLVSVSLDNSVIIWNAKTF---ELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSIT-KPFE 214 (942)
T ss_pred CCccEEEEecccceEEEEccccc---eeeeeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeec-cchh
Confidence 99999999999999999998864 7777888899999999999999999999999999999987765655554 22
Q ss_pred ----ccceeEEEEeeCCCcEEEEee----cCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCcccc
Q 017194 146 ----SSICSSVQFIPWKPWEVISGG----LDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLD 217 (375)
Q Consensus 146 ----~~~v~~~~~~~~~~~~l~~~~----~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 217 (375)
...+..+.|+|||. +|++.- .-.++.|.+-.+.+.-..+- + |..++.++.|+|..+..
T Consensus 215 ~~~~~T~f~RlSWSPDG~-~las~nA~n~~~~~~~IieR~tWk~~~~Lv-G------------H~~p~evvrFnP~lfe~ 280 (942)
T KOG0973|consen 215 ESPLTTFFLRLSWSPDGH-HLASPNAVNGGKSTIAIIERGTWKVDKDLV-G------------HSAPVEVVRFNPKLFER 280 (942)
T ss_pred hCCCcceeeecccCCCcC-eecchhhccCCcceeEEEecCCceeeeeee-c------------CCCceEEEEeChHHhcc
Confidence 34678899999999 677653 23367777765555444443 3 67899999999975544
Q ss_pred CCC-----------CEEEEEecCCcEEEEeCCCcceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeee
Q 017194 218 KTN-----------KICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSV 286 (375)
Q Consensus 218 ~~~-----------~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~ 286 (375)
+.. ..+|+|+.|++|.||.....+.. -.++.+
T Consensus 281 ~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl-------------------------------------~vi~~l 323 (942)
T KOG0973|consen 281 NNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPL-------------------------------------FVIHNL 323 (942)
T ss_pred ccccCCccCCCcceEEEEEecCCccEEEEecCCCCch-------------------------------------hhhhhh
Confidence 333 27899999999999998754221 111222
Q ss_pred cCCCccEEEEEEeecCCCCcEEEEecCCCeEEEEeCCCc
Q 017194 287 GGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRF 325 (375)
Q Consensus 287 ~~~~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd~~~~ 325 (375)
....|..++|+ |||..|+++|.||+|.+...+..
T Consensus 324 --f~~SI~DmsWs---pdG~~LfacS~DGtV~~i~Fee~ 357 (942)
T KOG0973|consen 324 --FNKSIVDMSWS---PDGFSLFACSLDGTVALIHFEEK 357 (942)
T ss_pred --hcCceeeeeEc---CCCCeEEEEecCCeEEEEEcchH
Confidence 25689999999 99999999999999999998865
No 121
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.97 E-value=2.6e-29 Score=208.91 Aligned_cols=239 Identities=16% Similarity=0.220 Sum_probs=205.7
Q ss_pred eeeecCCCceeE-EEEecCCCCEEEEeCCCCcEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEEcCCCeEEEEEC
Q 017194 9 RRLRGHKATATC-CIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDV 87 (375)
Q Consensus 9 ~~l~~h~~~i~~-~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i~iwd~ 87 (375)
..+++|.+.|.+ +++.+.++-.+++|+.|.+|.+|.....++..++.+|...|.++....++. +++|+.|.++++|..
T Consensus 51 ~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~ 129 (745)
T KOG0301|consen 51 HAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQAEPLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRI 129 (745)
T ss_pred eecccCcceeeccceeccccCcceEeecccceEEEEecCCCCchhhhhccccceeeeecCCcCc-eEecccccceEEecc
Confidence 457788888887 888765456799999999999999999999999999999999999888876 999999999999997
Q ss_pred CCCCcccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCceeeeeEecCcccceeEEEEeeCCCcEEEEeec
Q 017194 88 HMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGL 167 (375)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~ 167 (375)
. +....+.+|+..|+.+..-|++ .+++|+.|.+|++|.- ++.+++|. +|.+.|+.+++.+++. |++++.
T Consensus 130 ~-----~l~~~l~gH~asVWAv~~l~e~-~~vTgsaDKtIklWk~--~~~l~tf~-gHtD~VRgL~vl~~~~--flScsN 198 (745)
T KOG0301|consen 130 G-----ELVYSLQGHTASVWAVASLPEN-TYVTGSADKTIKLWKG--GTLLKTFS-GHTDCVRGLAVLDDSH--FLSCSN 198 (745)
T ss_pred h-----hhhcccCCcchheeeeeecCCC-cEEeccCcceeeeccC--Cchhhhhc-cchhheeeeEEecCCC--eEeecC
Confidence 6 4445588999999999999988 8999999999999984 88899999 9999999999999974 999999
Q ss_pred CCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCcceeeccc
Q 017194 168 DSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSK 247 (375)
Q Consensus 168 d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 247 (375)
||.|++|++ +++++.++. + |...++++.... ++..++++++|+++++|+...
T Consensus 199 Dg~Ir~w~~-~ge~l~~~~-g------------htn~vYsis~~~------~~~~Ivs~gEDrtlriW~~~e-------- 250 (745)
T KOG0301|consen 199 DGSIRLWDL-DGEVLLEMH-G------------HTNFVYSISMAL------SDGLIVSTGEDRTLRIWKKDE-------- 250 (745)
T ss_pred CceEEEEec-cCceeeeee-c------------cceEEEEEEecC------CCCeEEEecCCceEEEeecCc--------
Confidence 999999999 677777776 3 578999999666 699999999999999999872
Q ss_pred ccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEecCCCeEEEEeCCCc
Q 017194 248 STTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRF 325 (375)
Q Consensus 248 ~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd~~~~ 325 (375)
+.+.+.-....|+++.+- ++|. +++|+.||.|+||.....
T Consensus 251 ----------------------------------~~q~I~lPttsiWsa~~L---~NgD-Ivvg~SDG~VrVfT~~k~ 290 (745)
T KOG0301|consen 251 ----------------------------------CVQVITLPTTSIWSAKVL---LNGD-IVVGGSDGRVRVFTVDKD 290 (745)
T ss_pred ----------------------------------eEEEEecCccceEEEEEe---eCCC-EEEeccCceEEEEEeccc
Confidence 333444445578998887 6764 678888999999988754
No 122
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=6.6e-30 Score=217.25 Aligned_cols=255 Identities=12% Similarity=0.176 Sum_probs=184.8
Q ss_pred eeEee-ecCccEEEEEEeCCCCeEEEEcCCCeEEEEECCCCCccccccccc--------CCCcceeEEEEcC---CCCe-
Q 017194 51 QLVTD-VGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYN--------YNKEEINQIVCNP---KSSF- 117 (375)
Q Consensus 51 ~~~~~-~~~~~v~~l~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~--------~~~~~v~~~~~~~---~~~~- 117 (375)
.+.+. .|.+.|.++.|++||++||+|+.|+.|+||.+..... ..+.... ...+.+..+.-++ .++.
T Consensus 259 ~Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~-~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s 337 (712)
T KOG0283|consen 259 VQEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESER-MRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTS 337 (712)
T ss_pred eeccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccch-hcccccccchhhhhhhhccccCcccccccccccccc
Confidence 34455 7999999999999999999999999999999875221 1100000 0000111111111 0111
Q ss_pred -EEEEeCCCcEEEEeCc----CceeeeeEecCcccceeEEEEeeCCCcEEEEeecCCeEEEeeCCCCCcceEEecCCCCC
Q 017194 118 -LACADDGGDVKIIDIR----QHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPEN 192 (375)
Q Consensus 118 -l~~~~~dg~i~iwd~~----~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~ 192 (375)
.-.+..... .+.+.. ..+++..|. +|.+.|.++.|+.++ +|++++.|.+|++|++...+++..|.
T Consensus 338 ~~~~~~~s~~-~~~p~~~f~f~ekP~~ef~-GHt~DILDlSWSKn~--fLLSSSMDKTVRLWh~~~~~CL~~F~------ 407 (712)
T KOG0283|consen 338 SSRKGSQSPC-VLLPLKAFVFSEKPFCEFK-GHTADILDLSWSKNN--FLLSSSMDKTVRLWHPGRKECLKVFS------ 407 (712)
T ss_pred ccccccCCcc-ccCCCccccccccchhhhh-ccchhheecccccCC--eeEeccccccEEeecCCCcceeeEEe------
Confidence 111222222 222222 346788889 999999999999987 89999999999999999999999998
Q ss_pred CCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCcceeecccccCCCCCCceeecccccceeeeeee
Q 017194 193 NGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEIL 272 (375)
Q Consensus 193 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~ 272 (375)
|+..|+|++|+|. |.+++++|+-||.|+||++...+..
T Consensus 408 --------HndfVTcVaFnPv-----DDryFiSGSLD~KvRiWsI~d~~Vv----------------------------- 445 (712)
T KOG0283|consen 408 --------HNDFVTCVAFNPV-----DDRYFISGSLDGKVRLWSISDKKVV----------------------------- 445 (712)
T ss_pred --------cCCeeEEEEeccc-----CCCcEeecccccceEEeecCcCeeE-----------------------------
Confidence 7899999999998 9999999999999999999863211
Q ss_pred ecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEecCCCeEEEEeCCCceeeeecchhhhhhhhcccccceeeeee
Q 017194 273 DQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCT 352 (375)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 352 (375)
....-..-|++++|+ |||++.+.|+.+|.+++|+....+..+.....-.-..-..|. .|+++.|
T Consensus 446 ------------~W~Dl~~lITAvcy~---PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~-rITG~Q~ 509 (712)
T KOG0283|consen 446 ------------DWNDLRDLITAVCYS---PDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGK-RITGLQF 509 (712)
T ss_pred ------------eehhhhhhheeEEec---cCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCccccCc-eeeeeEe
Confidence 222224779999999 999999999999999999999876553221111111122233 8999999
Q ss_pred cCCCCCcEEEeeCCCeEEEEec
Q 017194 353 TPTESENLVVCDTSKVVKVYSI 374 (375)
Q Consensus 353 ~~~~~~~l~s~~~dg~v~iw~~ 374 (375)
.|.+...+++.+.|..|||+|.
T Consensus 510 ~p~~~~~vLVTSnDSrIRI~d~ 531 (712)
T KOG0283|consen 510 FPGDPDEVLVTSNDSRIRIYDG 531 (712)
T ss_pred cCCCCCeEEEecCCCceEEEec
Confidence 9877777888899999999997
No 123
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=7.4e-28 Score=174.27 Aligned_cols=249 Identities=16% Similarity=0.197 Sum_probs=201.0
Q ss_pred eecCCCceeEEEEecCCCCEEEEeCCCCcEEEEecccCce-----eeEeeecCccEEEEEEeCC----CCeEEEEcC-CC
Q 017194 11 LRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDV-----QLVTDVGNGPVTSLCFKSG----NEDIIYVSS-GK 80 (375)
Q Consensus 11 l~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~-----~~~~~~~~~~v~~l~~~~~----~~~l~~~~~-d~ 80 (375)
-+.|++.|+|.+|+|+ |++||+|+.|.+|++.-++...+ ...+..|.+.|..++|..+ +..|++++. |.
T Consensus 85 ~khhkgsiyc~~ws~~-geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc 163 (350)
T KOG0641|consen 85 NKHHKGSIYCTAWSPC-GELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDC 163 (350)
T ss_pred ccccCccEEEEEecCc-cCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcc
Confidence 4579999999999999 99999999999999987664332 4567789999999999643 456666553 56
Q ss_pred eEEEEECCCCCcccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCceeeeeEec-C-----cccceeEEEE
Q 017194 81 EVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRA-G-----HSSICSSVQF 154 (375)
Q Consensus 81 ~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~-----~~~~v~~~~~ 154 (375)
.|++-|...+ +.+..+.+|.+.|.++ ++-++-.+++|+.|.+|++||++-...+.++.. - ..+.|.+++.
T Consensus 164 ~iy~tdc~~g---~~~~a~sghtghilal-yswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~v 239 (350)
T KOG0641|consen 164 KIYITDCGRG---QGFHALSGHTGHILAL-YSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAV 239 (350)
T ss_pred eEEEeecCCC---CcceeecCCcccEEEE-EEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEE
Confidence 7777787754 5666777788888876 344677999999999999999998777776642 1 2357999999
Q ss_pred eeCCCcEEEEeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEE
Q 017194 155 IPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDV 234 (375)
Q Consensus 155 ~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i 234 (375)
.|.|+ +|++|-.|....+||++.++.++.+.. |...|.++.|+| ...++++++.|..|++
T Consensus 240 dpsgr-ll~sg~~dssc~lydirg~r~iq~f~p-------------hsadir~vrfsp------~a~yllt~syd~~ikl 299 (350)
T KOG0641|consen 240 DPSGR-LLASGHADSSCMLYDIRGGRMIQRFHP-------------HSADIRCVRFSP------GAHYLLTCSYDMKIKL 299 (350)
T ss_pred CCCcc-eeeeccCCCceEEEEeeCCceeeeeCC-------------CccceeEEEeCC------CceEEEEecccceEEE
Confidence 99998 899999999999999999999998863 478899999999 6889999999999999
Q ss_pred EeCCCcceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEecCC
Q 017194 235 INIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGND 314 (375)
Q Consensus 235 ~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~d 314 (375)
-|+...... .-.+..+..|+..+..+.|+ |..--+++.+.|
T Consensus 300 tdlqgdla~------------------------------------el~~~vv~ehkdk~i~~rwh---~~d~sfisssad 340 (350)
T KOG0641|consen 300 TDLQGDLAH------------------------------------ELPIMVVAEHKDKAIQCRWH---PQDFSFISSSAD 340 (350)
T ss_pred eecccchhh------------------------------------cCceEEEEeccCceEEEEec---CccceeeeccCc
Confidence 999853111 01223556788889999999 777788999999
Q ss_pred CeEEEEeCC
Q 017194 315 KLVKVWDCS 323 (375)
Q Consensus 315 g~i~iwd~~ 323 (375)
.++.+|-++
T Consensus 341 kt~tlwa~~ 349 (350)
T KOG0641|consen 341 KTATLWALN 349 (350)
T ss_pred ceEEEeccC
Confidence 999999764
No 124
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.97 E-value=1.5e-27 Score=197.99 Aligned_cols=272 Identities=17% Similarity=0.160 Sum_probs=195.6
Q ss_pred CEEEEeCCCCcEEEEecccCceeeEeeecCccEEEEEEeCCCCeE-EEEcCCCeEEEEECCCCCcccccccccCCCccee
Q 017194 29 GFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDI-IYVSSGKEVKSFDVHMPASWRPLESYNYNKEEIN 107 (375)
Q Consensus 29 ~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l-~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~ 107 (375)
..+++++.|+.|++||+.+++.+..+..+. .+..++|+|+++.+ ++++.++.|++||..+++....+. .+ ..+.
T Consensus 2 ~~~~s~~~d~~v~~~d~~t~~~~~~~~~~~-~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~---~~-~~~~ 76 (300)
T TIGR03866 2 KAYVSNEKDNTISVIDTATLEVTRTFPVGQ-RPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLP---SG-PDPE 76 (300)
T ss_pred cEEEEecCCCEEEEEECCCCceEEEEECCC-CCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEecc---CC-CCcc
Confidence 578899999999999999999888887654 46789999999876 556778999999998765433332 22 3356
Q ss_pred EEEEcCCCCeEEEE-eCCCcEEEEeCcCceeeeeEecCcccceeEEEEeeCCCcEEEEeecCC-eEEEeeCCCCCcceEE
Q 017194 108 QIVCNPKSSFLACA-DDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDS-KLVMWDFSKGRPNKIV 185 (375)
Q Consensus 108 ~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~-~i~~wd~~~~~~~~~~ 185 (375)
.++|+|+++.++++ ..++.+++||+++.+.+..+. +...+.+++|+|++. +++++..++ .+.+||.++++.....
T Consensus 77 ~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~--~~~~~~~~~~~~dg~-~l~~~~~~~~~~~~~d~~~~~~~~~~ 153 (300)
T TIGR03866 77 LFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIP--VGVEPEGMAVSPDGK-IVVNTSETTNMAHFIDTKTYEIVDNV 153 (300)
T ss_pred EEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEee--CCCCcceEEECCCCC-EEEEEecCCCeEEEEeCCCCeEEEEE
Confidence 78999999877655 468999999999888777776 334578899999998 677777664 5778899887766554
Q ss_pred ecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEE-ecCCcEEEEeCCCcceeecccccCCCCCCceeeccccc
Q 017194 186 NFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVA-KGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNI 264 (375)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~ 264 (375)
... .....++|+| ++++++++ ..++.|++||+.+++.........
T Consensus 154 ~~~--------------~~~~~~~~s~------dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~-------------- 199 (300)
T TIGR03866 154 LVD--------------QRPRFAEFTA------DGKELWVSSEIGGTVSVIDVATRKVIKKITFEI-------------- 199 (300)
T ss_pred EcC--------------CCccEEEECC------CCCEEEEEcCCCCEEEEEEcCcceeeeeeeecc--------------
Confidence 422 3456789988 78877655 468999999999754322111000
Q ss_pred ceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEE-ecCCCeEEEEeCCCceeeeecchhhhhhhhccc
Q 017194 265 RDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLIS-GGNDKLVKVWDCSRFQGVQTSINNDLLIKNINL 343 (375)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s-~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 343 (375)
............++|+ |++++++. .+.++.|.+||..+++ .... ..+
T Consensus 200 -------------------~~~~~~~~~~~~i~~s---~dg~~~~~~~~~~~~i~v~d~~~~~---------~~~~-~~~ 247 (300)
T TIGR03866 200 -------------------PGVHPEAVQPVGIKLT---KDGKTAFVALGPANRVAVVDAKTYE---------VLDY-LLV 247 (300)
T ss_pred -------------------cccccccCCccceEEC---CCCCEEEEEcCCCCeEEEEECCCCc---------EEEE-EEe
Confidence 0000001123467888 89987544 4557789999998873 2222 133
Q ss_pred ccceeeeeecCCCCCcEEEe-eCCCeEEEEecC
Q 017194 344 NKKVNWLCTTPTESENLVVC-DTSKVVKVYSIS 375 (375)
Q Consensus 344 ~~~v~~~~~~~~~~~~l~s~-~~dg~v~iw~~~ 375 (375)
...+.+++|+| ++++|+++ +.+|.|++||++
T Consensus 248 ~~~~~~~~~~~-~g~~l~~~~~~~~~i~v~d~~ 279 (300)
T TIGR03866 248 GQRVWQLAFTP-DEKYLLTTNGVSNDVSVIDVA 279 (300)
T ss_pred CCCcceEEECC-CCCEEEEEcCCCCeEEEEECC
Confidence 45788999999 88888876 468999999974
No 125
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.97 E-value=8.9e-28 Score=192.91 Aligned_cols=334 Identities=16% Similarity=0.198 Sum_probs=234.8
Q ss_pred CCeeeecCCCceeEEEEecCCCCEEEEeCCCC--------cEEEEecccCceeeEeeecCccEEEEEEeC--CCCeEEEE
Q 017194 7 KPRRLRGHKATATCCIASRDRPGFVASSGEDG--------CICWFDLRSKDVQLVTDVGNGPVTSLCFKS--GNEDIIYV 76 (375)
Q Consensus 7 ~~~~l~~h~~~i~~~~~~~~~~~~l~s~~~d~--------~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~--~~~~l~~~ 76 (375)
..+.+.||+..|.|++.+|+ .-.+++|-.-| .+++||..+-..+..+..-...|.+++|++ .|.+|...
T Consensus 96 ~Qr~y~GH~ddikc~~vHPd-ri~vatGQ~ag~~g~~~~phvriWdsv~L~TL~V~g~f~~GV~~vaFsk~~~G~~l~~v 174 (626)
T KOG2106|consen 96 SQRHYLGHNDDIKCMAVHPD-RIRVATGQGAGTSGRPLQPHVRIWDSVTLSTLHVIGFFDRGVTCVAFSKINGGSLLCAV 174 (626)
T ss_pred hcccccCCCCceEEEeecCC-ceeeccCcccccCCCcCCCeeeecccccceeeeeeccccccceeeeecccCCCceEEEe
Confidence 45667899999999999998 67777775544 499999888877888877788999999987 34555554
Q ss_pred c--CCCeEEEEECCCCCcccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCceeee---eEecCcccceeE
Q 017194 77 S--SGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYK---SLRAGHSSICSS 151 (375)
Q Consensus 77 ~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~---~~~~~~~~~v~~ 151 (375)
. .+..+.+||...+.....++.. +..|....|+|.+..+++....+.+.+|+.+.+...+ .|.......|.+
T Consensus 175 D~s~~h~lSVWdWqk~~~~~~vk~s---ne~v~~a~FHPtd~nliit~Gk~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~ 251 (626)
T KOG2106|consen 175 DDSNPHMLSVWDWQKKAKLGPVKTS---NEVVFLATFHPTDPNLIITCGKGHLYFWTLRGGSLVKRQGIFEKREKKFVLC 251 (626)
T ss_pred cCCCccccchhhchhhhccCcceec---cceEEEEEeccCCCcEEEEeCCceEEEEEccCCceEEEeeccccccceEEEE
Confidence 3 3457899999876666666554 6778899999977776666677999999998775543 333123468999
Q ss_pred EEEeeCCCcEEEEeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCc
Q 017194 152 VQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGV 231 (375)
Q Consensus 152 ~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~ 231 (375)
++|.++|+ +++|.++|.|.+|+....+..+... . |++.|.+++.-. +|.+|- |+.|..
T Consensus 252 v~F~engd--viTgDS~G~i~Iw~~~~~~~~k~~~-a------------H~ggv~~L~~lr------~GtllS-GgKDRk 309 (626)
T KOG2106|consen 252 VTFLENGD--VITGDSGGNILIWSKGTNRISKQVH-A------------HDGGVFSLCMLR------DGTLLS-GGKDRK 309 (626)
T ss_pred EEEcCCCC--EEeecCCceEEEEeCCCceEEeEee-e------------cCCceEEEEEec------CccEee-cCccce
Confidence 99999996 8999999999999998776666665 4 689999999987 566555 999999
Q ss_pred EEEEeCCCcceeecccccCCCCCCceeecccccceeeeeee----ecCCcceeEeeeeecCCCccEEEEEEeecCCCCcE
Q 017194 232 VDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEIL----DQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKY 307 (375)
Q Consensus 232 i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~ 307 (375)
|..||-.-.+...........+++.++-...+ +...... ....... ......+|......++.+ |+...
T Consensus 310 i~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~d--i~vGTtrN~iL~Gt~~~~--f~~~v~gh~delwgla~h---ps~~q 382 (626)
T KOG2106|consen 310 IILWDDNYRKLRETELPEQFGPIRTVAEGKGD--ILVGTTRNFILQGTLENG--FTLTVQGHGDELWGLATH---PSKNQ 382 (626)
T ss_pred EEeccccccccccccCchhcCCeeEEecCCCc--EEEeeccceEEEeeecCC--ceEEEEecccceeeEEcC---CChhh
Confidence 99999332222222222222334443333222 2221111 1111111 223456788899999999 88889
Q ss_pred EEEecCCCeEEEEeCCCceeee-----------------------------ecchhhhhhhhcccccceeeeeecCCCCC
Q 017194 308 LISGGNDKLVKVWDCSRFQGVQ-----------------------------TSINNDLLIKNINLNKKVNWLCTTPTESE 358 (375)
Q Consensus 308 l~s~~~dg~i~iwd~~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 358 (375)
+++++.|+.+++|+-....-.. .......+.. .....+++.+.++| +|.
T Consensus 383 ~~T~gqdk~v~lW~~~k~~wt~~~~d~~~~~~fhpsg~va~Gt~~G~w~V~d~e~~~lv~~-~~d~~~ls~v~ysp-~G~ 460 (626)
T KOG2106|consen 383 LLTCGQDKHVRLWNDHKLEWTKIIEDPAECADFHPSGVVAVGTATGRWFVLDTETQDLVTI-HTDNEQLSVVRYSP-DGA 460 (626)
T ss_pred eeeccCcceEEEccCCceeEEEEecCceeEeeccCcceEEEeeccceEEEEecccceeEEE-EecCCceEEEEEcC-CCC
Confidence 9999999999999922211000 0011111211 22267899999999 999
Q ss_pred cEEEeeCCCeEEEEecC
Q 017194 359 NLVVCDTSKVVKVYSIS 375 (375)
Q Consensus 359 ~l~s~~~dg~v~iw~~~ 375 (375)
+||.|+.|+.|++|.++
T Consensus 461 ~lAvgs~d~~iyiy~Vs 477 (626)
T KOG2106|consen 461 FLAVGSHDNHIYIYRVS 477 (626)
T ss_pred EEEEecCCCeEEEEEEC
Confidence 99999999999999864
No 126
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=3.4e-28 Score=184.24 Aligned_cols=287 Identities=16% Similarity=0.213 Sum_probs=214.3
Q ss_pred eeEEEEecCCCCEEEEeCCCCcEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEEcCCCeEEEEECCCCCcccccc
Q 017194 18 ATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLE 97 (375)
Q Consensus 18 i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~ 97 (375)
-.|+.|++. |.+||+|+.||.|.|||+.+...-+.+.+|..+|++++|+++|+.|++++.|..|.+||+..+...+.+.
T Consensus 26 a~~~~Fs~~-G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rir 104 (405)
T KOG1273|consen 26 AECCQFSRW-GDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIR 104 (405)
T ss_pred cceEEeccC-cceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEE
Confidence 788999999 9999999999999999999999888999999999999999999999999999999999999887655554
Q ss_pred cccCCCcceeEEEEcCCCC-eEEEEeCCCcEEEEeCcCceeeeeEecC----cccceeEEEEeeCCCcEEEEeecCCeEE
Q 017194 98 SYNYNKEEINQIVCNPKSS-FLACADDGGDVKIIDIRQHCLYKSLRAG----HSSICSSVQFIPWKPWEVISGGLDSKLV 172 (375)
Q Consensus 98 ~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~----~~~~v~~~~~~~~~~~~l~~~~~d~~i~ 172 (375)
- ..+|+.+.|+|..+ ..++.-.+..-.+-++..++. ..+... .+....+..|.+.|+ ++++|...|.+.
T Consensus 105 f----~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h-~~Lp~d~d~dln~sas~~~fdr~g~-yIitGtsKGkll 178 (405)
T KOG1273|consen 105 F----DSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKH-SVLPKDDDGDLNSSASHGVFDRRGK-YIITGTSKGKLL 178 (405)
T ss_pred c----cCccceeeeccccCCeEEEEEecCCcEEEEecCCce-eeccCCCccccccccccccccCCCC-EEEEecCcceEE
Confidence 3 68999999999543 333333444455555544221 111100 111223346888898 799999999999
Q ss_pred EeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCcceeecccccCCC
Q 017194 173 MWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKP 252 (375)
Q Consensus 173 ~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~ 252 (375)
++|..+.+++..++.. ....|..+.++. .|+.|+.-+.|..|+.|+++.-....+
T Consensus 179 v~~a~t~e~vas~rit------------s~~~IK~I~~s~------~g~~liiNtsDRvIR~ye~~di~~~~r------- 233 (405)
T KOG1273|consen 179 VYDAETLECVASFRIT------------SVQAIKQIIVSR------KGRFLIINTSDRVIRTYEISDIDDEGR------- 233 (405)
T ss_pred EEecchheeeeeeeec------------hheeeeEEEEec------cCcEEEEecCCceEEEEehhhhcccCc-------
Confidence 9999999999888755 236788899988 799999999999999999884211000
Q ss_pred CCCceeecccccceeeeeeeecCCcceeEeeeeecC--CCccEEEEEEeecCCCCcEEEEecC-CCeEEEEeCCCceeee
Q 017194 253 LKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGG--HTAAASCVAFSMFGERGKYLISGGN-DKLVKVWDCSRFQGVQ 329 (375)
Q Consensus 253 ~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~s~~~~~~~~l~s~~~-dg~i~iwd~~~~~~~~ 329 (375)
.......+++.. ....-.++.|| .+|.|+++++. ...++||.-..+
T Consensus 234 ------------------------~~e~e~~~K~qDvVNk~~Wk~ccfs---~dgeYv~a~s~~aHaLYIWE~~~G---- 282 (405)
T KOG1273|consen 234 ------------------------DGEVEPEHKLQDVVNKLQWKKCCFS---GDGEYVCAGSARAHALYIWEKSIG---- 282 (405)
T ss_pred ------------------------cCCcChhHHHHHHHhhhhhhheeec---CCccEEEeccccceeEEEEecCCc----
Confidence 000111111111 12344667888 89999988764 567999999998
Q ss_pred ecchhhhhhhhcccc-cceeeeeecCCCCCcEEEeeCCCeEEEEec
Q 017194 330 TSINNDLLIKNINLN-KKVNWLCTTPTESENLVVCDTSKVVKVYSI 374 (375)
Q Consensus 330 ~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~l~s~~~dg~v~iw~~ 374 (375)
.+++.+.|.. .....+.|+| -...+++- ..|.|++|..
T Consensus 283 -----sLVKILhG~kgE~l~DV~whp-~rp~i~si-~sg~v~iw~~ 321 (405)
T KOG1273|consen 283 -----SLVKILHGTKGEELLDVNWHP-VRPIIASI-ASGVVYIWAV 321 (405)
T ss_pred -----ceeeeecCCchhheeeccccc-ceeeeeec-cCCceEEEEe
Confidence 6777777766 5678899998 44456666 7789999975
No 127
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=5.1e-27 Score=194.89 Aligned_cols=288 Identities=17% Similarity=0.209 Sum_probs=228.7
Q ss_pred CCCceeEEEEecCCCCEEEEeCCCCcEEEEecccCce-eeEeeec-CccEEEEEEeCCCCeEEEEcCCCeEEEEECCCCC
Q 017194 14 HKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDV-QLVTDVG-NGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPA 91 (375)
Q Consensus 14 h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~-~~~~~~~-~~~v~~l~~~~~~~~l~~~~~d~~i~iwd~~~~~ 91 (375)
-.++|.+|+|+.+ .+.||.+-.||.|.||++..+=. ...+.++ +..|.+++|++.+ .|++.+.+|.|.-||+.+.+
T Consensus 24 ~Ps~I~slA~s~k-S~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e~~-RLFS~g~sg~i~EwDl~~lk 101 (691)
T KOG2048|consen 24 KPSEIVSLAYSHK-SNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAEGG-RLFSSGLSGSITEWDLHTLK 101 (691)
T ss_pred eccceEEEEEecc-CCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEccCC-eEEeecCCceEEEEecccCc
Confidence 4688999999998 78899999999999999987543 4445554 5789999999654 68888999999999999765
Q ss_pred cccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCceeee--eEecCcccceeEEEEeeCCCcEEEEeecCC
Q 017194 92 SWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYK--SLRAGHSSICSSVQFIPWKPWEVISGGLDS 169 (375)
Q Consensus 92 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~ 169 (375)
....+.. ..+.|++++.+|.+..++.|++||.+..++...++... .|. -.++.|.++.|+|++. .+++|+.||
T Consensus 102 ~~~~~d~---~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~-rq~sRvLslsw~~~~~-~i~~Gs~Dg 176 (691)
T KOG2048|consen 102 QKYNIDS---NGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLM-RQKSRVLSLSWNPTGT-KIAGGSIDG 176 (691)
T ss_pred eeEEecC---CCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecc-cccceEEEEEecCCcc-EEEecccCc
Confidence 5444444 47899999999999999999999988888887765533 344 4568999999999997 699999999
Q ss_pred eEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCcceeeccccc
Q 017194 170 KLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKST 249 (375)
Q Consensus 170 ~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~ 249 (375)
.|++||..++..+.....+..... ...+.-|.++.+-. ...+++|...|.|.+||...+
T Consensus 177 ~Iriwd~~~~~t~~~~~~~~d~l~-----k~~~~iVWSv~~Lr-------d~tI~sgDS~G~V~FWd~~~g--------- 235 (691)
T KOG2048|consen 177 VIRIWDVKSGQTLHIITMQLDRLS-----KREPTIVWSVLFLR-------DSTIASGDSAGTVTFWDSIFG--------- 235 (691)
T ss_pred eEEEEEcCCCceEEEeeecccccc-----cCCceEEEEEEEee-------cCcEEEecCCceEEEEcccCc---------
Confidence 999999999988774432210000 00234578888874 778999999999999999875
Q ss_pred CCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEecCCCeEEEEeCCCceeee
Q 017194 250 TKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQ 329 (375)
Q Consensus 250 ~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~ 329 (375)
.++.....|...|.+++.. +++.++++++.|+.|.-|...+.....
T Consensus 236 -------------------------------TLiqS~~~h~adVl~Lav~---~~~d~vfsaGvd~~ii~~~~~~~~~~w 281 (691)
T KOG2048|consen 236 -------------------------------TLIQSHSCHDADVLALAVA---DNEDRVFSAGVDPKIIQYSLTTNKSEW 281 (691)
T ss_pred -------------------------------chhhhhhhhhcceeEEEEc---CCCCeEEEccCCCceEEEEecCCccce
Confidence 4555777899999999999 888999999999999999888764310
Q ss_pred ecchhhhhhhhcccccceeeeeecCCCCCcEEEeeCCCeEEE
Q 017194 330 TSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKV 371 (375)
Q Consensus 330 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~i 371 (375)
........|...|.+++..+ + .|++|+.|..+.+
T Consensus 282 -----v~~~~r~~h~hdvrs~av~~-~--~l~sgG~d~~l~i 315 (691)
T KOG2048|consen 282 -----VINSRRDLHAHDVRSMAVIE-N--ALISGGRDFTLAI 315 (691)
T ss_pred -----eeeccccCCcccceeeeeec-c--eEEecceeeEEEE
Confidence 12334457888999999977 4 8999999998876
No 128
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.97 E-value=4.5e-28 Score=192.18 Aligned_cols=298 Identities=16% Similarity=0.204 Sum_probs=217.1
Q ss_pred eeeecCCCceeEEEEecCCC-CEEEEeCCCCcEEEEecccCce----eeEeeecCccEEEEEEeCCC-CeEEEEcCCCeE
Q 017194 9 RRLRGHKATATCCIASRDRP-GFVASSGEDGCICWFDLRSKDV----QLVTDVGNGPVTSLCFKSGN-EDIIYVSSGKEV 82 (375)
Q Consensus 9 ~~l~~h~~~i~~~~~~~~~~-~~l~s~~~d~~i~iw~~~~~~~----~~~~~~~~~~v~~l~~~~~~-~~l~~~~~d~~i 82 (375)
...+-|.++|++++|+|... +++|+|..-|.|-+||+.+.+. +..+..|..+|.+|.|+|.. ..+++.+.||+|
T Consensus 180 ~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGti 259 (498)
T KOG4328|consen 180 NVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTI 259 (498)
T ss_pred ceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCcee
Confidence 45567899999999999855 6899999999999999953332 56677899999999999854 578999999999
Q ss_pred EEEECCCCCcccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCcee-eeeEecCcccceeEEEEeeCCCcE
Q 017194 83 KSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCL-YKSLRAGHSSICSSVQFIPWKPWE 161 (375)
Q Consensus 83 ~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~ 161 (375)
++-|++.... ..+.........+..+.|+.+...++.+..=|...+||.+++.. ...+. .|...|.+++++|..+++
T Consensus 260 R~~D~~~~i~-e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~-lh~kKI~sv~~NP~~p~~ 337 (498)
T KOG4328|consen 260 RLQDFEGNIS-EEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLR-LHKKKITSVALNPVCPWF 337 (498)
T ss_pred eeeeecchhh-HHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhh-hhhcccceeecCCCCchh
Confidence 9999986533 33333322345678889998888888888878999999997654 66666 788899999999999999
Q ss_pred EEEeecCCeEEEeeCCCCCcceE---EecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCC
Q 017194 162 VISGGLDSKLVMWDFSKGRPNKI---VNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIE 238 (375)
Q Consensus 162 l~~~~~d~~i~~wd~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~ 238 (375)
|++++.|++++|||++.-..... ..+. |...|.+..|+| .+..|++.+.|..|+|||..
T Consensus 338 laT~s~D~T~kIWD~R~l~~K~sp~lst~~------------HrrsV~sAyFSP------s~gtl~TT~~D~~IRv~dss 399 (498)
T KOG4328|consen 338 LATASLDQTAKIWDLRQLRGKASPFLSTLP------------HRRSVNSAYFSP------SGGTLLTTCQDNEIRVFDSS 399 (498)
T ss_pred eeecccCcceeeeehhhhcCCCCcceeccc------------ccceeeeeEEcC------CCCceEeeccCCceEEeecc
Confidence 99999999999999987443332 1122 678999999999 56669999999999999985
Q ss_pred C---cceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEecCCC
Q 017194 239 S---ELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDK 315 (375)
Q Consensus 239 ~---~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~dg 315 (375)
- ...+... +.--.....|- ......|. |+..++++|-.-.
T Consensus 400 ~~sa~~~p~~~---------------------------------I~Hn~~t~Rwl-T~fKA~W~---P~~~li~vg~~~r 442 (498)
T KOG4328|consen 400 CISAKDEPLGT---------------------------------IPHNNRTGRWL-TPFKAAWD---PDYNLIVVGRYPR 442 (498)
T ss_pred cccccCCccce---------------------------------eeccCcccccc-cchhheeC---CCccEEEEeccCc
Confidence 1 1000000 00000000111 23345788 8999999999999
Q ss_pred eEEEEeCCCceeeeecchhhhhhhhc-ccccceee-eeecCCCCCcEEE-eeCCCeEEEEe
Q 017194 316 LVKVWDCSRFQGVQTSINNDLLIKNI-NLNKKVNW-LCTTPTESENLVV-CDTSKVVKVYS 373 (375)
Q Consensus 316 ~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~~v~~-~~~~~~~~~~l~s-~~~dg~v~iw~ 373 (375)
.|-|+|-..++. +..+. .....|.+ ..|+| -...+++ ++..|.|+||.
T Consensus 443 ~IDv~~~~~~q~---------v~el~~P~~~tI~~vn~~HP-~~~~~~aG~~s~Gki~vft 493 (498)
T KOG4328|consen 443 PIDVFDGNGGQM---------VCELHDPESSTIPSVNEFHP-MRDTLAAGGNSSGKIYVFT 493 (498)
T ss_pred ceeEEcCCCCEE---------eeeccCccccccccceeecc-cccceeccCCccceEEEEe
Confidence 999999998842 22222 22224444 47888 5554555 45778999985
No 129
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.97 E-value=2.1e-27 Score=197.59 Aligned_cols=297 Identities=12% Similarity=0.129 Sum_probs=236.5
Q ss_pred eecCCCceeEEEEecCCCCEEEEeCCCCcEEEEecccCce-------eeEeeecCccEEEEEEeCCCCeEEEEcCCCeEE
Q 017194 11 LRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDV-------QLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVK 83 (375)
Q Consensus 11 l~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~-------~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i~ 83 (375)
+.||++.|+++.|+|. +..|++++.|.++.+|...+..- +..+.+.........|+|+++.+++-+..|-.+
T Consensus 263 l~GHeDWV~sv~W~p~-~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~h 341 (764)
T KOG1063|consen 263 LMGHEDWVYSVWWHPE-GLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFH 341 (764)
T ss_pred hcCcccceEEEEEccc-hhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcEE
Confidence 4699999999999999 78899999999999999875532 122223356688999999999999999999999
Q ss_pred EEECCCCCcccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCc----------------------------
Q 017194 84 SFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQH---------------------------- 135 (375)
Q Consensus 84 iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~---------------------------- 135 (375)
+|..+....+.......+|...|.+++|.|.|.+|++.+.|.+-|++-.-..
T Consensus 342 lWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~~~ 421 (764)
T KOG1063|consen 342 LWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNEDLQ 421 (764)
T ss_pred EEeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehccCCce
Confidence 9996666666777788899999999999999999999999988887632200
Q ss_pred -------eeee---------------------------------------------------------------------
Q 017194 136 -------CLYK--------------------------------------------------------------------- 139 (375)
Q Consensus 136 -------~~~~--------------------------------------------------------------------- 139 (375)
+.++
T Consensus 422 FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ 501 (764)
T KOG1063|consen 422 FVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELT 501 (764)
T ss_pred eeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhcc
Confidence 0000
Q ss_pred ------------------eEecCcccceeEEEEeeCCCcEEEEeecC-----CeEEEeeCCCCCcceEEecCCCCCCCCC
Q 017194 140 ------------------SLRAGHSSICSSVQFIPWKPWEVISGGLD-----SKLVMWDFSKGRPNKIVNFGLPENNGNA 196 (375)
Q Consensus 140 ------------------~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-----~~i~~wd~~~~~~~~~~~~~~~~~~~~~ 196 (375)
.+. +|...|.+++.+|+++ ++++++.. ..|++|+..+-.....+..
T Consensus 502 ePP~EdqLq~~tLwPEv~KLY-GHGyEv~~l~~s~~gn-liASaCKS~~~ehAvI~lw~t~~W~~~~~L~~--------- 570 (764)
T KOG1063|consen 502 EPPTEDQLQQNTLWPEVHKLY-GHGYEVYALAISPTGN-LIASACKSSLKEHAVIRLWNTANWLQVQELEG--------- 570 (764)
T ss_pred CCChHHHHHHhccchhhHHhc-cCceeEEEEEecCCCC-EEeehhhhCCccceEEEEEeccchhhhheecc---------
Confidence 234 7888999999999998 89988754 3689999988877776663
Q ss_pred CcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCcceeecccccCCCCCCceeecccccceeeeeeeecCC
Q 017194 197 GQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSG 276 (375)
Q Consensus 197 ~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~ 276 (375)
|.-.|+.++|+| |+++|++.+.|.++.+|........
T Consensus 571 ----HsLTVT~l~FSp------dg~~LLsvsRDRt~sl~~~~~~~~~--------------------------------- 607 (764)
T KOG1063|consen 571 ----HSLTVTRLAFSP------DGRYLLSVSRDRTVSLYEVQEDIKD--------------------------------- 607 (764)
T ss_pred ----cceEEEEEEECC------CCcEEEEeecCceEEeeeeecccch---------------------------------
Confidence 578899999999 8999999999999999998643111
Q ss_pred cceeEeeeeecCCCccEEEEEEeecCCCCcEEEEecCCCeEEEEeCCCceeeeecchhhhhh-hhcccccceeeeeecCC
Q 017194 277 GKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLI-KNINLNKKVNWLCTTPT 355 (375)
Q Consensus 277 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~ 355 (375)
. ......+.|..-|.+..|+ |++++++|+|.|.+|++|........ .+.. ....+...|+.+++.|.
T Consensus 608 e---~~fa~~k~HtRIIWdcsW~---pde~~FaTaSRDK~VkVW~~~~~~d~------~i~~~a~~~~~~aVTAv~~~~~ 675 (764)
T KOG1063|consen 608 E---FRFACLKAHTRIIWDCSWS---PDEKYFATASRDKKVKVWEEPDLRDK------YISRFACLKFSLAVTAVAYLPV 675 (764)
T ss_pred h---hhhccccccceEEEEcccC---cccceeEEecCCceEEEEeccCchhh------hhhhhchhccCCceeeEEeecc
Confidence 0 0122477899999999999 99999999999999999999886211 2222 45578899999999885
Q ss_pred CCC----cEEEeeCCCeEEEEec
Q 017194 356 ESE----NLVVCDTSKVVKVYSI 374 (375)
Q Consensus 356 ~~~----~l~s~~~dg~v~iw~~ 374 (375)
+.. .++.|-..|.|.+|..
T Consensus 676 ~~~e~~~~vavGle~GeI~l~~~ 698 (764)
T KOG1063|consen 676 DHNEKGDVVAVGLEKGEIVLWRR 698 (764)
T ss_pred ccccccceEEEEecccEEEEEec
Confidence 433 5677889999999985
No 130
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=3.6e-29 Score=210.58 Aligned_cols=248 Identities=15% Similarity=0.286 Sum_probs=196.0
Q ss_pred CccEEEEEEeCCCCeEEEEcCCCeEEEEECCCCCcccccccc-c---CCCcceeEEEEcC-CCCeEEEEeCCCcEEEEeC
Q 017194 58 NGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESY-N---YNKEEINQIVCNP-KSSFLACADDGGDVKIIDI 132 (375)
Q Consensus 58 ~~~v~~l~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~-~---~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~ 132 (375)
.....+|..+++-..++.++ ...+++|.+............ . .-...+..+.|.. +.++||+++.+|.|.+||+
T Consensus 39 k~~~nAIs~nr~~~qiv~AG-rs~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~nG~i~vWdl 117 (839)
T KOG0269|consen 39 KAKANAISVNRDINQIVVAG-RSLLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCSTNGVISVWDL 117 (839)
T ss_pred ccccceEeecCCcceeEEec-ccceeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheeecCCCcEEEEec
Confidence 34566777788888888877 456777776543221111111 1 1123456677875 5678999999999999999
Q ss_pred cC---ceeeeeEecCcccceeEEEEeeCCCcEEEEeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEe
Q 017194 133 RQ---HCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIA 209 (375)
Q Consensus 133 ~~---~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 209 (375)
.. .+.+..|. .|...+.++.|++..+++|++|+.||.|++||++..+....+... ...|..+.
T Consensus 118 nk~~rnk~l~~f~-EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~n-------------SESiRDV~ 183 (839)
T KOG0269|consen 118 NKSIRNKLLTVFN-EHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSN-------------SESIRDVK 183 (839)
T ss_pred CccccchhhhHhh-hhccceeeeeeccCCccEEEecCCCceEEEEeeeccccccccccc-------------chhhhcee
Confidence 86 56677888 999999999999999989999999999999999988877666533 57899999
Q ss_pred ecCCccccCCCCEEEEEecCCcEEEEeCCCcceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCC
Q 017194 210 IPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGH 289 (375)
Q Consensus 210 ~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (375)
|+|. .+..++++...|.+++||++... ++...+.+|
T Consensus 184 fsp~-----~~~~F~s~~dsG~lqlWDlRqp~---------------------------------------r~~~k~~AH 219 (839)
T KOG0269|consen 184 FSPG-----YGNKFASIHDSGYLQLWDLRQPD---------------------------------------RCEKKLTAH 219 (839)
T ss_pred eccC-----CCceEEEecCCceEEEeeccCch---------------------------------------hHHHHhhcc
Confidence 9996 68999999999999999999642 556688999
Q ss_pred CccEEEEEEeecCCCCcEEEEecCCCeEEEEeCCCceeeeecchhhhhhhhcccccceeeeeecCCCCCcEEEee--CCC
Q 017194 290 TAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCD--TSK 367 (375)
Q Consensus 290 ~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~--~dg 367 (375)
.++|.++.|+ |++.+|||||.|+.|+|||+.+... .......-..+|..+.|-|.....|++++ .|-
T Consensus 220 ~GpV~c~nwh---Pnr~~lATGGRDK~vkiWd~t~~~~--------~~~~tInTiapv~rVkWRP~~~~hLAtcsmv~dt 288 (839)
T KOG0269|consen 220 NGPVLCLNWH---PNREWLATGGRDKMVKIWDMTDSRA--------KPKHTINTIAPVGRVKWRPARSYHLATCSMVVDT 288 (839)
T ss_pred cCceEEEeec---CCCceeeecCCCccEEEEeccCCCc--------cceeEEeecceeeeeeeccCccchhhhhhccccc
Confidence 9999999999 9999999999999999999997632 11222334578999999997777788876 788
Q ss_pred eEEEEecC
Q 017194 368 VVKVYSIS 375 (375)
Q Consensus 368 ~v~iw~~~ 375 (375)
.|+|||+.
T Consensus 289 sV~VWDvr 296 (839)
T KOG0269|consen 289 SVHVWDVR 296 (839)
T ss_pred eEEEEeec
Confidence 99999973
No 131
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=2.1e-26 Score=191.27 Aligned_cols=211 Identities=18% Similarity=0.194 Sum_probs=176.3
Q ss_pred CeeeecCC-CceeEEEEecCCCCEEEEeCCCCcEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEEcCCCeEEEEE
Q 017194 8 PRRLRGHK-ATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFD 86 (375)
Q Consensus 8 ~~~l~~h~-~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i~iwd 86 (375)
...+.|++ +.|.+++|++ +..|.+.+.+|.|.-||+.++++...++...+.|++++.+|.+..++.|+.||.+..++
T Consensus 61 ~~vi~g~~drsIE~L~W~e--~~RLFS~g~sg~i~EwDl~~lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s 138 (691)
T KOG2048|consen 61 EPVIHGPEDRSIESLAWAE--GGRLFSSGLSGSITEWDLHTLKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFS 138 (691)
T ss_pred eEEEecCCCCceeeEEEcc--CCeEEeecCCceEEEEecccCceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEe
Confidence 44566654 5699999995 46788999999999999999999999999999999999999999999999999888888
Q ss_pred CCCCCcccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCceeeeeE-------ecCcccceeEEEEeeCCC
Q 017194 87 VHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSL-------RAGHSSICSSVQFIPWKP 159 (375)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-------~~~~~~~v~~~~~~~~~~ 159 (375)
...++ +..-..+...++.|.++.|+|++..|+.|+.||.|++||..++..+... ......-|+++.|..++
T Consensus 139 ~~p~~-I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~- 216 (691)
T KOG2048|consen 139 IGPDK-ITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDS- 216 (691)
T ss_pred cCCce-EEEEeecccccceEEEEEecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecC-
Confidence 77543 3333344444689999999999999999999999999999988766522 10133468888888777
Q ss_pred cEEEEeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCC
Q 017194 160 WEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIES 239 (375)
Q Consensus 160 ~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 239 (375)
.+++|...|+|.+||...+..++.+.. |...|.+++..+ ++.++++++.|+.|..|...+
T Consensus 217 -tI~sgDS~G~V~FWd~~~gTLiqS~~~-------------h~adVl~Lav~~------~~d~vfsaGvd~~ii~~~~~~ 276 (691)
T KOG2048|consen 217 -TIASGDSAGTVTFWDSIFGTLIQSHSC-------------HDADVLALAVAD------NEDRVFSAGVDPKIIQYSLTT 276 (691)
T ss_pred -cEEEecCCceEEEEcccCcchhhhhhh-------------hhcceeEEEEcC------CCCeEEEccCCCceEEEEecC
Confidence 699999999999999999999888875 478899999998 789999999999999998877
Q ss_pred cce
Q 017194 240 ELN 242 (375)
Q Consensus 240 ~~~ 242 (375)
...
T Consensus 277 ~~~ 279 (691)
T KOG2048|consen 277 NKS 279 (691)
T ss_pred Ccc
Confidence 643
No 132
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=7.5e-28 Score=191.41 Aligned_cols=273 Identities=14% Similarity=0.176 Sum_probs=208.4
Q ss_pred eCCC-CcEEEEecccCceeeEeeec-CccEEEEEEeCCCCeEEEEcCC-CeEEEEECCCCCcccccccccCCCcceeEEE
Q 017194 34 SGED-GCICWFDLRSKDVQLVTDVG-NGPVTSLCFKSGNEDIIYVSSG-KEVKSFDVHMPASWRPLESYNYNKEEINQIV 110 (375)
Q Consensus 34 ~~~d-~~i~iw~~~~~~~~~~~~~~-~~~v~~l~~~~~~~~l~~~~~d-~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~ 110 (375)
++.| .++.+||+.+|....++++. ...-.++..- .+.+++++... ..|.+|.+........... -+++|.+++
T Consensus 13 sS~d~~~~~~~dl~TGt~~~~ykg~~~a~~~sl~~l-~~~yllsaq~~rp~l~vw~i~k~~~~~q~~v---~Pg~v~al~ 88 (476)
T KOG0646|consen 13 SSFDPINCIVWDLRTGTSLLQYKGSYLAQAASLTAL-NNEYLLSAQLKRPLLHVWEILKKDQVVQYIV---LPGPVHALA 88 (476)
T ss_pred cCCCCcceeEEecCCCceeEEecCcccccchhhhhh-chhheeeecccCccccccccCchhhhhhhcc---cccceeeee
Confidence 3444 56999999999988888764 2222222221 23567766554 4889999875333221112 267899999
Q ss_pred EcCCCCeEEEEeCCCcEEEEeCcCceeeeeEecCcccceeEEEEeeCCCcEEEEeecCCeEEEeeCCC---------CCc
Q 017194 111 CNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSK---------GRP 181 (375)
Q Consensus 111 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~---------~~~ 181 (375)
-+|.|.+++.|+..|.|++|.+.+|..+..+. +|-..|+++.|+.||. +|++|+.||.|.+|++.. .++
T Consensus 89 s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~-aHYQ~ITcL~fs~dgs-~iiTgskDg~V~vW~l~~lv~a~~~~~~~p 166 (476)
T KOG0646|consen 89 SSNLGYFLLAGTISGNLYLWELSSGILLNVLS-AHYQSITCLKFSDDGS-HIITGSKDGAVLVWLLTDLVSADNDHSVKP 166 (476)
T ss_pred cCCCceEEEeecccCcEEEEEeccccHHHHHH-hhccceeEEEEeCCCc-EEEecCCCccEEEEEEEeecccccCCCccc
Confidence 99999999999899999999999999999998 9999999999999999 899999999999998742 233
Q ss_pred ceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCcceeecccccCCCCCCceeecc
Q 017194 182 NKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSK 261 (375)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~ 261 (375)
+..+. . |.-+|+.+.+.+ .+...++++++.|.++++||+..+...
T Consensus 167 ~~~f~-~------------HtlsITDl~ig~----Gg~~~rl~TaS~D~t~k~wdlS~g~LL------------------ 211 (476)
T KOG0646|consen 167 LHIFS-D------------HTLSITDLQIGS----GGTNARLYTASEDRTIKLWDLSLGVLL------------------ 211 (476)
T ss_pred eeeec-c------------CcceeEEEEecC----CCccceEEEecCCceEEEEEeccceee------------------
Confidence 33333 1 567899998876 223578999999999999999975322
Q ss_pred cccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEecCCCeEEEEeCCCceeeee-------cchh
Q 017194 262 VNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQT-------SINN 334 (375)
Q Consensus 262 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~-------~~~~ 334 (375)
.++. ....+.+++.+ |-+..+..|+.+|.|.+.++........ ...+
T Consensus 212 ----------------------lti~-fp~si~av~lD---pae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~ 265 (476)
T KOG0646|consen 212 ----------------------LTIT-FPSSIKAVALD---PAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEEN 265 (476)
T ss_pred ----------------------EEEe-cCCcceeEEEc---ccccEEEecCCcceEEeeehhcCCccccccccccccccc
Confidence 2222 24678999999 8899999999999999998876542211 1222
Q ss_pred hhhhhhccccc--ceeeeeecCCCCCcEEEeeCCCeEEEEec
Q 017194 335 DLLIKNINLNK--KVNWLCTTPTESENLVVCDTSKVVKVYSI 374 (375)
Q Consensus 335 ~~~~~~~~~~~--~v~~~~~~~~~~~~l~s~~~dg~v~iw~~ 374 (375)
.....+.+|.+ .|+|++.+- ||..|++|+.||.|+|||+
T Consensus 266 t~~~~~~Gh~~~~~ITcLais~-DgtlLlSGd~dg~VcvWdi 306 (476)
T KOG0646|consen 266 TQINVLVGHENESAITCLAIST-DGTLLLSGDEDGKVCVWDI 306 (476)
T ss_pred ceeeeeccccCCcceeEEEEec-CccEEEeeCCCCCEEEEec
Confidence 34456778888 999999998 9999999999999999997
No 133
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.96 E-value=1.8e-27 Score=179.70 Aligned_cols=246 Identities=15% Similarity=0.134 Sum_probs=188.9
Q ss_pred cCccEEEEEEeCCCCeEEEEcCCCeEEEEECCCCCcccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCce
Q 017194 57 GNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHC 136 (375)
Q Consensus 57 ~~~~v~~l~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 136 (375)
....|.++.|+|.+..|++++.||.+++||...... ...-.|..++.+++|.+ ...+++|+.||.|+.+|+.++.
T Consensus 12 P~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l----~~~~~~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dln~~~ 86 (323)
T KOG1036|consen 12 PEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSL----KLKFKHGAPLLDCAFAD-ESTIVTGGLDGQVRRYDLNTGN 86 (323)
T ss_pred ChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhh----hhheecCCceeeeeccC-CceEEEeccCceEEEEEecCCc
Confidence 367899999999999999999999999999986422 22223588999999987 4588999999999999999887
Q ss_pred eeeeEecCcccceeEEEEeeCCCcEEEEeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccc
Q 017194 137 LYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADML 216 (375)
Q Consensus 137 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 216 (375)
....- .|..+++++.+++... .+++|+.|++|++||.+.......+.. ...|.++..
T Consensus 87 ~~~ig--th~~~i~ci~~~~~~~-~vIsgsWD~~ik~wD~R~~~~~~~~d~--------------~kkVy~~~v------ 143 (323)
T KOG1036|consen 87 EDQIG--THDEGIRCIEYSYEVG-CVISGSWDKTIKFWDPRNKVVVGTFDQ--------------GKKVYCMDV------ 143 (323)
T ss_pred ceeec--cCCCceEEEEeeccCC-eEEEcccCccEEEEecccccccccccc--------------CceEEEEec------
Confidence 65544 5999999999998776 799999999999999998666655553 357888888
Q ss_pred cCCCCEEEEEecCCcEEEEeCCCcceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEE
Q 017194 217 DKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCV 296 (375)
Q Consensus 217 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 296 (375)
.+..|++|+.+..+.+||+++....... .-..-+..++++
T Consensus 144 --~g~~LvVg~~~r~v~iyDLRn~~~~~q~--------------------------------------reS~lkyqtR~v 183 (323)
T KOG1036|consen 144 --SGNRLVVGTSDRKVLIYDLRNLDEPFQR--------------------------------------RESSLKYQTRCV 183 (323)
T ss_pred --cCCEEEEeecCceEEEEEcccccchhhh--------------------------------------ccccceeEEEEE
Confidence 5889999999999999999975433211 111224578999
Q ss_pred EEeecCCCCcEEEEecCCCeEEEEeCCCceeee----ecchhhhhhhhcccccceeeeeecCCCCCcEEEeeCCCeEEEE
Q 017194 297 AFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQ----TSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVY 372 (375)
Q Consensus 297 ~~s~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~----~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~iw 372 (375)
++- |++.=.+.++-||.|.+=.++..+..+ ..........-...-.+|++++|+| -...|+||+.||.|.+|
T Consensus 184 ~~~---pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp-~~~tfaTgGsDG~V~~W 259 (323)
T KOG1036|consen 184 ALV---PNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHP-IHGTFATGGSDGIVNIW 259 (323)
T ss_pred EEe---cCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEecc-ccceEEecCCCceEEEc
Confidence 998 888888999999999887776652111 0001111111111234899999999 56789999999999999
Q ss_pred ec
Q 017194 373 SI 374 (375)
Q Consensus 373 ~~ 374 (375)
|+
T Consensus 260 d~ 261 (323)
T KOG1036|consen 260 DL 261 (323)
T ss_pred cC
Confidence 96
No 134
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.96 E-value=4.5e-29 Score=192.27 Aligned_cols=242 Identities=11% Similarity=0.175 Sum_probs=203.5
Q ss_pred eeEeeecCccEEEEEEeCCC-CeEEEEcCCCeEEEEECCCCCcccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEE
Q 017194 51 QLVTDVGNGPVTSLCFKSGN-EDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKI 129 (375)
Q Consensus 51 ~~~~~~~~~~v~~l~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i 129 (375)
+..+.+|.+.|.+++=+|.. ..+++|+.||.|++||+.+ ...+..+..|.+.|..+++.. ..+++++.|.+|+.
T Consensus 59 v~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsq---R~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~ 133 (433)
T KOG0268|consen 59 VGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQ---RECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQ 133 (433)
T ss_pred hhhccccccccchhhcCcchhhhhhccccCceEEEEehhh---hhhhheeecccCceeeEEecc--cceEEecCCcceee
Confidence 55678999999999999977 6799999999999999985 456677788899999999987 57888889999999
Q ss_pred EeCcCceeeeeEecCcccceeEEEEeeCCCcEEEEeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEe
Q 017194 130 IDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIA 209 (375)
Q Consensus 130 wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 209 (375)
|.++. ..+.++. ....+..+.-+..+. .++++++ .|.|||.....++..+..+ ...|.++.
T Consensus 134 wk~~~-~p~~til--g~s~~~gIdh~~~~~-~FaTcGe--~i~IWD~~R~~Pv~smswG-------------~Dti~svk 194 (433)
T KOG0268|consen 134 WKIDG-PPLHTIL--GKSVYLGIDHHRKNS-VFATCGE--QIDIWDEQRDNPVSSMSWG-------------ADSISSVK 194 (433)
T ss_pred eeccC-Ccceeee--ccccccccccccccc-cccccCc--eeeecccccCCccceeecC-------------CCceeEEe
Confidence 99865 4666665 456777887777666 7898885 5999999999999999877 57899999
Q ss_pred ecCCccccCCCCEEEEEecCCcEEEEeCCCcceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCC
Q 017194 210 IPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGH 289 (375)
Q Consensus 210 ~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (375)
|+|. ....|+++..|+.|.+||+++..... +.+..
T Consensus 195 fNpv-----ETsILas~~sDrsIvLyD~R~~~Pl~------------------------------------KVi~~---- 229 (433)
T KOG0268|consen 195 FNPV-----ETSILASCASDRSIVLYDLRQASPLK------------------------------------KVILT---- 229 (433)
T ss_pred cCCC-----cchheeeeccCCceEEEecccCCccc------------------------------------eeeee----
Confidence 9996 67788888899999999999753221 11122
Q ss_pred CccEEEEEEeecCCCCcEEEEecCCCeEEEEeCCCceeeeecchhhhhhhhcccccceeeeeecCCCCCcEEEeeCCCeE
Q 017194 290 TAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVV 369 (375)
Q Consensus 290 ~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v 369 (375)
..-+.++|+ |.+--+++|++|..++.||++... ..+....+|...|.+++|+| .|+-+++||.|.+|
T Consensus 230 -mRTN~Iswn---PeafnF~~a~ED~nlY~~DmR~l~--------~p~~v~~dhvsAV~dVdfsp-tG~EfvsgsyDksI 296 (433)
T KOG0268|consen 230 -MRTNTICWN---PEAFNFVAANEDHNLYTYDMRNLS--------RPLNVHKDHVSAVMDVDFSP-TGQEFVSGSYDKSI 296 (433)
T ss_pred -ccccceecC---ccccceeeccccccceehhhhhhc--------ccchhhcccceeEEEeccCC-CcchhccccccceE
Confidence 234678999 888889999999999999999876 77889999999999999999 89999999999999
Q ss_pred EEEec
Q 017194 370 KVYSI 374 (375)
Q Consensus 370 ~iw~~ 374 (375)
+||.+
T Consensus 297 RIf~~ 301 (433)
T KOG0268|consen 297 RIFPV 301 (433)
T ss_pred EEeec
Confidence 99976
No 135
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.96 E-value=2.4e-27 Score=185.37 Aligned_cols=303 Identities=16% Similarity=0.184 Sum_probs=211.2
Q ss_pred CCceeEEEEecCCCCEEEEeCCCCcEEEEecccCce---------eeEeeecCccEEEEEEeCCCCeEEEEcCCCeEEEE
Q 017194 15 KATATCCIASRDRPGFVASSGEDGCICWFDLRSKDV---------QLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSF 85 (375)
Q Consensus 15 ~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~---------~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i~iw 85 (375)
..+|.++.|.++..+.+|||+.|..|+||.++.++. ...+..|...|+++.|+|+|+.|++|+.+|.+.+|
T Consensus 13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lW 92 (434)
T KOG1009|consen 13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLW 92 (434)
T ss_pred CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEE
Confidence 468999999998555999999999999999875443 44567799999999999999999999999999999
Q ss_pred ECC--------C-----CCcccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCceeeeeEecCcccceeEE
Q 017194 86 DVH--------M-----PASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSV 152 (375)
Q Consensus 86 d~~--------~-----~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~ 152 (375)
-.. + .+.+...+.+.+|...|..++|+|+++++++++.|..+++||+..++....+. .|...+..+
T Consensus 93 k~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~-dh~~yvqgv 171 (434)
T KOG1009|consen 93 KQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILD-DHEHYVQGV 171 (434)
T ss_pred EecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeecc-cccccccee
Confidence 876 2 22244455667789999999999999999999999999999999999999999 999999999
Q ss_pred EEeeCCCcEEEEeecCCeEEEeeCCCCCcceEEecC-CC-----CCCCCCCcccCC----CceeEEeecCCccccCCCCE
Q 017194 153 QFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFG-LP-----ENNGNAGQCYNP----AFVHAIAIPDADMLDKTNKI 222 (375)
Q Consensus 153 ~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~-~~-----~~~~~~~~~~~~----~~v~~~~~~~~~~~~~~~~~ 222 (375)
+|.|.++ ++++-+.|...+.+++...+.++..... .+ +........+|. .....++|+| +|.+
T Consensus 172 awDpl~q-yv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTP------dG~l 244 (434)
T KOG1009|consen 172 AWDPLNQ-YVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTP------DGSL 244 (434)
T ss_pred ecchhhh-hhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCC------CCcE
Confidence 9999998 6999999988888887765554443311 00 000011111121 1233444544 5555
Q ss_pred EEEEec----CCcE-----EEEeCCCcceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccE
Q 017194 223 CVVAKG----DGVV-----DVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAA 293 (375)
Q Consensus 223 l~~~~~----dg~i-----~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 293 (375)
|++... .+.+ ++|+-.. ..++...+.....+.
T Consensus 245 lvtPag~~~~g~~~~~n~tYvfsrk~---------------------------------------l~rP~~~lp~~~k~~ 285 (434)
T KOG1009|consen 245 LVTPAGLFKVGGGVFRNTSYVFSRKD---------------------------------------LKRPAARLPSPKKPA 285 (434)
T ss_pred EEcccceeeeCCceeeceeEeecccc---------------------------------------ccCceeecCCCCcce
Confidence 555431 1111 1111111 111222333333344
Q ss_pred EEEEEeec---------------CCCCcEEEEecCCCeEEEEeCCCceeeeecchhhhhhhhcccccceeeeeecCCCCC
Q 017194 294 SCVAFSMF---------------GERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESE 358 (375)
Q Consensus 294 ~~~~~s~~---------------~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 358 (375)
..+.|+|. -|-+..+|.++. +.|++||.++.. ++...-.-|-..|++++|++ ||.
T Consensus 286 lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt~-~svyvydtq~~~--------P~~~v~nihy~~iTDiaws~-dg~ 355 (434)
T KOG1009|consen 286 LAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIATK-NSVYVYDTQTLE--------PLAVVDNIHYSAITDIAWSD-DGS 355 (434)
T ss_pred EEEEeeeeEEEeccccccccccccccceEEEEeec-ceEEEecccccc--------ceEEEeeeeeeeecceeecC-CCc
Confidence 44444431 134445666665 579999999874 23333445889999999999 999
Q ss_pred cEEEeeCCCeEEEEec
Q 017194 359 NLVVCDTSKVVKVYSI 374 (375)
Q Consensus 359 ~l~s~~~dg~v~iw~~ 374 (375)
.|+..+.||..-+-.+
T Consensus 356 ~l~vSS~DGyCS~vtf 371 (434)
T KOG1009|consen 356 VLLVSSTDGFCSLVTF 371 (434)
T ss_pred EEEEeccCCceEEEEE
Confidence 9999999997665433
No 136
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.96 E-value=1.2e-29 Score=211.86 Aligned_cols=254 Identities=17% Similarity=0.308 Sum_probs=218.2
Q ss_pred EEEEeCCCCcEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEEcCCCeEEEEECCCCCcccccccccCCCcceeEE
Q 017194 30 FVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQI 109 (375)
Q Consensus 30 ~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~ 109 (375)
++.....+-.+++|+.+. +..|...+.++..-..++.+++|+.|..+-+|.+.. ...+..+.+|..+|.++
T Consensus 6 ~~m~~~~~t~Lr~~~~~~------~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~k---p~~i~S~~~hespIeSl 76 (825)
T KOG0267|consen 6 FLMKTKRATKLRVWDTRE------FVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGK---PNAITSLTGHESPIESL 76 (825)
T ss_pred ccceeeeeeccccccchh------hhhhhhhhceeeeeccceeeccCCCceeeccccccC---CchhheeeccCCcceee
Confidence 344444555677888653 345788888888877788999999999999999874 34455688999999999
Q ss_pred EEcCCCCeEEEEeCCCcEEEEeCcCceeeeeEecCcccceeEEEEeeCCCcEEEEeecCCeEEEeeCCCCCcceEEecCC
Q 017194 110 VCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGL 189 (375)
Q Consensus 110 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~ 189 (375)
.|+++..+|++|+.+|+|++||++..+.++++. +|...+.++.|+|.+. ++++|+.|+.+++||.+...+.+.+.-
T Consensus 77 ~f~~~E~LlaagsasgtiK~wDleeAk~vrtLt-gh~~~~~sv~f~P~~~-~~a~gStdtd~~iwD~Rk~Gc~~~~~s-- 152 (825)
T KOG0267|consen 77 TFDTSERLLAAGSASGTIKVWDLEEAKIVRTLT-GHLLNITSVDFHPYGE-FFASGSTDTDLKIWDIRKKGCSHTYKS-- 152 (825)
T ss_pred ecCcchhhhcccccCCceeeeehhhhhhhhhhh-ccccCcceeeeccceE-EeccccccccceehhhhccCceeeecC--
Confidence 999999999999999999999999999999999 9999999999999998 689999999999999998888888873
Q ss_pred CCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCcceeecccccCCCCCCceeecccccceeee
Q 017194 190 PENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEM 269 (375)
Q Consensus 190 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~ 269 (375)
|...+..+.|+| +|++++.|+.|..+++||+..+
T Consensus 153 -----------~~~vv~~l~lsP------~Gr~v~~g~ed~tvki~d~~ag----------------------------- 186 (825)
T KOG0267|consen 153 -----------HTRVVDVLRLSP------DGRWVASGGEDNTVKIWDLTAG----------------------------- 186 (825)
T ss_pred -----------CcceeEEEeecC------CCceeeccCCcceeeeeccccc-----------------------------
Confidence 467899999999 8999999999999999999864
Q ss_pred eeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEecCCCeEEEEeCCCceeeeecchhhhhhhhcccccceee
Q 017194 270 EILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNW 349 (375)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 349 (375)
++..++..|...+..+.|+ |..-++++|+.|+++++||+++. +.+.........|.+
T Consensus 187 -----------k~~~ef~~~e~~v~sle~h---p~e~Lla~Gs~d~tv~f~dletf---------e~I~s~~~~~~~v~~ 243 (825)
T KOG0267|consen 187 -----------KLSKEFKSHEGKVQSLEFH---PLEVLLAPGSSDRTVRFWDLETF---------EVISSGKPETDGVRS 243 (825)
T ss_pred -----------ccccccccccccccccccC---chhhhhccCCCCceeeeecccee---------EEeeccCCccCCcee
Confidence 4556888999999999999 88889999999999999999987 555555556789999
Q ss_pred eeecCCCCCcEEEeeCC
Q 017194 350 LCTTPTESENLVVCDTS 366 (375)
Q Consensus 350 ~~~~~~~~~~l~s~~~d 366 (375)
..|.| +++.+++|..+
T Consensus 244 ~~fn~-~~~~~~~G~q~ 259 (825)
T KOG0267|consen 244 LAFNP-DGKIVLSGEQI 259 (825)
T ss_pred eeecC-CceeeecCchh
Confidence 99999 99888877544
No 137
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.96 E-value=4e-29 Score=208.75 Aligned_cols=207 Identities=18% Similarity=0.303 Sum_probs=188.3
Q ss_pred eeecCCCceeEEEEecCCCCEEEEeCCCCcEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEEcCCCeEEEEECCC
Q 017194 10 RLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHM 89 (375)
Q Consensus 10 ~l~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i~iwd~~~ 89 (375)
.+..|...|.|+..-.. ++.+++|+.|..+-||.+..-..+..+.+|..+|.++.|+++..+|++|+.+|+|++||++.
T Consensus 23 ~~~~hsaav~~lk~~~s-~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDlee 101 (825)
T KOG0267|consen 23 EFVAHSAAVGCLKIRKS-SRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEE 101 (825)
T ss_pred hhhhhhhhhceeeeecc-ceeeccCCCceeeccccccCCchhheeeccCCcceeeecCcchhhhcccccCCceeeeehhh
Confidence 45568889999888555 78999999999999999988888888999999999999999999999999999999999995
Q ss_pred CCcccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCceeeeeEecCcccceeEEEEeeCCCcEEEEeecCC
Q 017194 90 PASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDS 169 (375)
Q Consensus 90 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~ 169 (375)
. +.+..+.+|...+.++.|+|-+.+.+.|+.|+.+++||++..-+...+. +|...|..+.|+|+|. .++++++|.
T Consensus 102 A---k~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~-s~~~vv~~l~lsP~Gr-~v~~g~ed~ 176 (825)
T KOG0267|consen 102 A---KIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYK-SHTRVVDVLRLSPDGR-WVASGGEDN 176 (825)
T ss_pred h---hhhhhhhccccCcceeeeccceEEeccccccccceehhhhccCceeeec-CCcceeEEEeecCCCc-eeeccCCcc
Confidence 4 5566788899999999999999999999999999999999888889999 8999999999999999 699999999
Q ss_pred eEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCcc
Q 017194 170 KLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESEL 241 (375)
Q Consensus 170 ~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~ 241 (375)
.+++||+..|+....|+. |...+.++.|+| ..-+++.|+.|+++++||+++.+
T Consensus 177 tvki~d~~agk~~~ef~~-------------~e~~v~sle~hp------~e~Lla~Gs~d~tv~f~dletfe 229 (825)
T KOG0267|consen 177 TVKIWDLTAGKLSKEFKS-------------HEGKVQSLEFHP------LEVLLAPGSSDRTVRFWDLETFE 229 (825)
T ss_pred eeeeeccccccccccccc-------------ccccccccccCc------hhhhhccCCCCceeeeeccceeE
Confidence 999999999999998874 468899999999 68899999999999999999753
No 138
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.96 E-value=7.4e-27 Score=177.91 Aligned_cols=314 Identities=13% Similarity=0.136 Sum_probs=226.8
Q ss_pred ecCCCceeEEEEecC----CCCEEEEeCCCCcEEEEecccCceeeEee-----ecCccEEEEEEeCC----CCeEEEEcC
Q 017194 12 RGHKATATCCIASRD----RPGFVASSGEDGCICWFDLRSKDVQLVTD-----VGNGPVTSLCFKSG----NEDIIYVSS 78 (375)
Q Consensus 12 ~~h~~~i~~~~~~~~----~~~~l~s~~~d~~i~iw~~~~~~~~~~~~-----~~~~~v~~l~~~~~----~~~l~~~~~ 78 (375)
..|+.+|..++|++- ..+.+|++|.+ .+.+|......-+..++ .|.+....++|+-+ ..++|+++.
T Consensus 35 ed~~~~I~gv~fN~~~~~~e~~vfatvG~~-rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~G~ 113 (385)
T KOG1034|consen 35 EDHNKPIFGVAFNSFLGCDEPQVFATVGGN-RVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAGGY 113 (385)
T ss_pred ccCCCccceeeeehhcCCCCCceEEEeCCc-EEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEeecc
Confidence 468899999999842 24678888875 68899876544333332 36778888999753 457899999
Q ss_pred CCeEEEEECCCCCcccccccccCCCcceeEEEEcCCC-CeEEEEeCCCcEEEEeCcCceeeeeEec--CcccceeEEEEe
Q 017194 79 GKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKS-SFLACADDGGDVKIIDIRQHCLYKSLRA--GHSSICSSVQFI 155 (375)
Q Consensus 79 d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~--~~~~~v~~~~~~ 155 (375)
-|.|+|.|+.++ +....+.+|...|+.+.+.|+. +++++++.|..|++|++++..++..|-. +|...|.++.|+
T Consensus 114 ~GvIrVid~~~~---~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~ 190 (385)
T KOG1034|consen 114 LGVIRVIDVVSG---QCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFS 190 (385)
T ss_pred eeEEEEEecchh---hhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEEc
Confidence 999999999864 4556677889999999999964 7899999999999999999999888752 799999999999
Q ss_pred eCCCcEEEEeecCCeEEEeeCCCCCcceEEecCC---CC----------C--CCCCCcccCCCceeEEeecCCccccCCC
Q 017194 156 PWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGL---PE----------N--NGNAGQCYNPAFVHAIAIPDADMLDKTN 220 (375)
Q Consensus 156 ~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~---~~----------~--~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 220 (375)
++|. ++++++.|.++++|++...+....++... ++ . ..-.....|...|-++.| -|
T Consensus 191 ~~gd-~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw--------~g 261 (385)
T KOG1034|consen 191 LDGD-RIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRW--------FG 261 (385)
T ss_pred CCCC-eeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHH--------Hh
Confidence 9999 79999999999999998543222222110 00 0 000122335555666666 37
Q ss_pred CEEEEEecCCcEEEEeCCCc-ceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEe
Q 017194 221 KICVVAKGDGVVDVINIESE-LNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFS 299 (375)
Q Consensus 221 ~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 299 (375)
.++++-+-++.|..|..... +.......+ ......+.++.-....|+-+.|+
T Consensus 262 d~ilSkscenaI~~w~pgkl~e~~~~vkp~---------------------------es~~Ti~~~~~~~~c~iWfirf~ 314 (385)
T KOG1034|consen 262 DFILSKSCENAIVCWKPGKLEESIHNVKPP---------------------------ESATTILGEFDYPMCDIWFIRFA 314 (385)
T ss_pred hheeecccCceEEEEecchhhhhhhccCCC---------------------------ccceeeeeEeccCccceEEEEEe
Confidence 89999999999999988421 111111000 01113344555666778888775
Q ss_pred ecCCCCcEEEEecCCCeEEEEeCCCceeeeecchhhhhhhhc--ccccceeeeeecCCCCCcEEEeeCCCeEEEEec
Q 017194 300 MFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNI--NLNKKVNWLCTTPTESENLVVCDTSKVVKVYSI 374 (375)
Q Consensus 300 ~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~s~~~dg~v~iw~~ 374 (375)
++|-++.||.|...|.|++||++.... ....++. .-...|...+|+. |+..|+...+|+.|.-||.
T Consensus 315 -~d~~~~~la~gnq~g~v~vwdL~~~ep-------~~~ttl~~s~~~~tVRQ~sfS~-dgs~lv~vcdd~~Vwrwdr 382 (385)
T KOG1034|consen 315 -FDPWQKMLALGNQSGKVYVWDLDNNEP-------PKCTTLTHSKSGSTVRQTSFSR-DGSILVLVCDDGTVWRWDR 382 (385)
T ss_pred -ecHHHHHHhhccCCCcEEEEECCCCCC-------ccCceEEeccccceeeeeeecc-cCcEEEEEeCCCcEEEEEe
Confidence 447789999999999999999998742 1111111 1235688889998 9999999999999999984
No 139
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=8.1e-27 Score=184.47 Aligned_cols=285 Identities=14% Similarity=0.197 Sum_probs=208.2
Q ss_pred EEEEecCCCCEEEEeCCC---CcEEEEecccCceeeEeeec----CccEEEEEEeC-------CCCeEEEEcCCCeEEEE
Q 017194 20 CCIASRDRPGFVASSGED---GCICWFDLRSKDVQLVTDVG----NGPVTSLCFKS-------GNEDIIYVSSGKEVKSF 85 (375)
Q Consensus 20 ~~~~~~~~~~~l~s~~~d---~~i~iw~~~~~~~~~~~~~~----~~~v~~l~~~~-------~~~~l~~~~~d~~i~iw 85 (375)
.+..-|. .++++++-.+ ..+.+|=.+..+.- -+-.| .....|++|.. .|+++|.|+.+..|.||
T Consensus 130 e~~V~ps-DnlIl~ar~eddvs~LEvYVyn~~e~n-lYvHHD~ilpafPLC~ewld~~~~~~~~gNyvAiGtmdp~IeIW 207 (463)
T KOG0270|consen 130 EEQVKPS-DNLILCARNEDDVSYLEVYVYNEEEEN-LYVHHDFILPAFPLCIEWLDHGSKSGGAGNYVAIGTMDPEIEIW 207 (463)
T ss_pred cceeccC-CcEEEEeeccCCceEEEEEEEcCCCcc-eeEecceeccCcchhhhhhhcCCCCCCCcceEEEeccCceeEEe
Confidence 3455665 4566665432 34555544433321 12223 23345667642 36799999999999999
Q ss_pred ECCCCCccccc------------------ccccCCCcceeEEEEcCC-CCeEEEEeCCCcEEEEeCcCceeeeeEecCcc
Q 017194 86 DVHMPASWRPL------------------ESYNYNKEEINQIVCNPK-SSFLACADDGGDVKIIDIRQHCLYKSLRAGHS 146 (375)
Q Consensus 86 d~~~~~~~~~~------------------~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 146 (375)
|+.-.....+. ....+|+..|..+.|+.. .+.||+|+.|.+|.+||+.++++...+. .|.
T Consensus 208 DLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~~-~~~ 286 (463)
T KOG0270|consen 208 DLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTGKPKSSIT-HHG 286 (463)
T ss_pred ccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEEEEcCCCCcceehh-hcC
Confidence 98632111111 112368888889999875 4579999999999999999999999999 899
Q ss_pred cceeEEEEeeCCCcEEEEeecCCeEEEeeCCC-CCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEE
Q 017194 147 SICSSVQFIPWKPWEVISGGLDSKLVMWDFSK-GRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVV 225 (375)
Q Consensus 147 ~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~ 225 (375)
..|.++.|+|..+.+|++|+.|++|.+.|.|. ...-..+++ .+.|-.++|.|. ....+++
T Consensus 287 k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~--------------~g~VEkv~w~~~-----se~~f~~ 347 (463)
T KOG0270|consen 287 KKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKF--------------DGEVEKVAWDPH-----SENSFFV 347 (463)
T ss_pred CceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEe--------------ccceEEEEecCC-----CceeEEE
Confidence 99999999999888999999999999999994 233334443 378999999986 6778889
Q ss_pred EecCCcEEEEeCCCcceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCC
Q 017194 226 AKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERG 305 (375)
Q Consensus 226 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~ 305 (375)
+..||.++-+|+|... +++.++.+|..+|.++.+++. .-
T Consensus 348 ~tddG~v~~~D~R~~~---------------------------------------~~vwt~~AHd~~ISgl~~n~~--~p 386 (463)
T KOG0270|consen 348 STDDGTVYYFDIRNPG---------------------------------------KPVWTLKAHDDEISGLSVNIQ--TP 386 (463)
T ss_pred ecCCceEEeeecCCCC---------------------------------------CceeEEEeccCCcceEEecCC--CC
Confidence 9999999999999741 567799999999999999853 33
Q ss_pred cEEEEecCCCeEEEEeCCCceeeeecchhhhhhhhcccccceeeeeecCCCCCcEEEeeCCCeEEEEec
Q 017194 306 KYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSI 374 (375)
Q Consensus 306 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~iw~~ 374 (375)
.++++++.|+.|++|++..... ..+....-.-+...|.++.|...-.|+.|+..+.++|||+
T Consensus 387 ~~l~t~s~d~~Vklw~~~~~~~-------~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~ 448 (463)
T KOG0270|consen 387 GLLSTASTDKVVKLWKFDVDSP-------KSVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDI 448 (463)
T ss_pred cceeeccccceEEEEeecCCCC-------cccccccccccceeecccCCCcceEEEecCccceEEEeec
Confidence 5899999999999999987532 1111111122346677777755567888888889999996
No 140
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=5.8e-26 Score=171.59 Aligned_cols=276 Identities=14% Similarity=0.184 Sum_probs=200.7
Q ss_pred ecCCCceeEEEEecCCCCEEEEeCCCCcEEEEecccC----ceeeEeeecCccEEEEEEeC--CCCeEEEEcCCCeEEEE
Q 017194 12 RGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSK----DVQLVTDVGNGPVTSLCFKS--GNEDIIYVSSGKEVKSF 85 (375)
Q Consensus 12 ~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~----~~~~~~~~~~~~v~~l~~~~--~~~~l~~~~~d~~i~iw 85 (375)
.+|.+-|.|+.|.+. |+.+|+|+.|++|+|||.++. .+....+.|.+.|..+.|.+ -|+.+|+++.|+++.||
T Consensus 10 s~h~DlihdVs~D~~-GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iW 88 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDFY-GRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIW 88 (361)
T ss_pred cCCcceeeeeeeccc-CceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeee
Confidence 479999999999999 999999999999999996543 34566788999999999964 48899999999999999
Q ss_pred ECCC------CCcccccccccCCCcceeEEEEcCC--CCeEEEEeCCCcEEEEeCcCceeeeeE------e------cCc
Q 017194 86 DVHM------PASWRPLESYNYNKEEINQIVCNPK--SSFLACADDGGDVKIIDIRQHCLYKSL------R------AGH 145 (375)
Q Consensus 86 d~~~------~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~iwd~~~~~~~~~~------~------~~~ 145 (375)
.-.. ++.+.....+......|+++.|.|. |-.+|+++.||.++||+.-..-.+... + ..+
T Consensus 89 EE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~ 168 (361)
T KOG2445|consen 89 EEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKN 168 (361)
T ss_pred eecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccc
Confidence 8521 2334455556666789999999994 678999999999999987543222211 1 035
Q ss_pred ccceeEEEEeeCC--CcEEEEeecC-----CeEEEeeCCCCC--cceEEecCCCCCCCCCCcccCCCceeEEeecCCccc
Q 017194 146 SSICSSVQFIPWK--PWEVISGGLD-----SKLVMWDFSKGR--PNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADML 216 (375)
Q Consensus 146 ~~~v~~~~~~~~~--~~~l~~~~~d-----~~i~~wd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 216 (375)
..+..|+.|+|.. +.+|+.|+.+ +.++||....+. ..+.-++. -++.+|+.|+|.|..
T Consensus 169 ~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~-----------d~~dpI~di~wAPn~-- 235 (361)
T KOG2445|consen 169 KQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELP-----------DHTDPIRDISWAPNI-- 235 (361)
T ss_pred cCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcC-----------CCCCcceeeeecccc--
Confidence 5677899999753 1267777765 478888876543 11111111 167899999999941
Q ss_pred cCCCCEEEEEecCCcEEEEeCCCcceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEE
Q 017194 217 DKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCV 296 (375)
Q Consensus 217 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 296 (375)
.....+||+++.|| |+||.++............ .|+. -.....+.+..+.+|++.|..+
T Consensus 236 Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~---------~~~~-----------~~~l~v~~vs~~~~H~~~VWrv 294 (361)
T KOG2445|consen 236 GRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVL---------APDL-----------MTDLPVEKVSELDDHNGEVWRV 294 (361)
T ss_pred CCceeeEEEeecCc-EEEEEEeeccchhhhhccc---------CCCC-----------ccccceEEeeeccCCCCceEEE
Confidence 11346899999999 9999998643222111100 0000 0023456677899999999999
Q ss_pred EEeecCCCCcEEEEecCCCeEEEEeCCCc
Q 017194 297 AFSMFGERGKYLISGGNDKLVKVWDCSRF 325 (375)
Q Consensus 297 ~~s~~~~~~~~l~s~~~dg~i~iwd~~~~ 325 (375)
.|. -.|..|++.|.||.|++|...-.
T Consensus 295 ~wN---mtGtiLsStGdDG~VRLWkany~ 320 (361)
T KOG2445|consen 295 RWN---MTGTILSSTGDDGCVRLWKANYN 320 (361)
T ss_pred EEe---eeeeEEeecCCCceeeehhhhhh
Confidence 999 89999999999999999986644
No 141
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.96 E-value=8.2e-26 Score=187.53 Aligned_cols=276 Identities=13% Similarity=0.121 Sum_probs=194.1
Q ss_pred CCCCCeeeecCCCceeEEEEecCCCCEE-EEeCCCCcEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEE-cCCCe
Q 017194 4 AEAKPRRLRGHKATATCCIASRDRPGFV-ASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYV-SSGKE 81 (375)
Q Consensus 4 ~~~~~~~l~~h~~~i~~~~~~~~~~~~l-~s~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~~d~~ 81 (375)
+++.++.+.+|.. +.+++|+|+ ++.+ ++++.++.|++||..+++....+..+.. +..++|+|+++.++++ +.++.
T Consensus 20 t~~~~~~~~~~~~-~~~l~~~~d-g~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-~~~~~~~~~g~~l~~~~~~~~~ 96 (300)
T TIGR03866 20 TLEVTRTFPVGQR-PRGITLSKD-GKLLYVCASDSDTIQVIDLATGEVIGTLPSGPD-PELFALHPNGKILYIANEDDNL 96 (300)
T ss_pred CCceEEEEECCCC-CCceEECCC-CCEEEEEECCCCeEEEEECCCCcEEEeccCCCC-ccEEEECCCCCEEEEEcCCCCe
Confidence 4556677776644 678999999 6655 6778899999999999888777765443 5678999999977655 45799
Q ss_pred EEEEECCCCCcccccccccCCCcceeEEEEcCCCCeEEEEeCCC-cEEEEeCcCceeeeeEecCcccceeEEEEeeCCCc
Q 017194 82 VKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGG-DVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPW 160 (375)
Q Consensus 82 i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 160 (375)
+++||+++.+....+. . ...+.+++|+|++++++++..++ .+.+||.++++....+. ....+..++|+|++..
T Consensus 97 l~~~d~~~~~~~~~~~---~-~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~--~~~~~~~~~~s~dg~~ 170 (300)
T TIGR03866 97 VTVIDIETRKVLAEIP---V-GVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVL--VDQRPRFAEFTADGKE 170 (300)
T ss_pred EEEEECCCCeEEeEee---C-CCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEE--cCCCccEEEECCCCCE
Confidence 9999998754333222 1 23467899999999999888765 46788998887766554 2345678999999984
Q ss_pred EEEEeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEE-ecCCcEEEEeCCC
Q 017194 161 EVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVA-KGDGVVDVINIES 239 (375)
Q Consensus 161 ~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~-~~dg~i~i~d~~~ 239 (375)
+++++..++.|++||+++++.+..+....+.... .......++++| +++.++++ ..++.+.+||+.+
T Consensus 171 l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~------~~~~~~~i~~s~------dg~~~~~~~~~~~~i~v~d~~~ 238 (300)
T TIGR03866 171 LWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHP------EAVQPVGIKLTK------DGKTAFVALGPANRVAVVDAKT 238 (300)
T ss_pred EEEEcCCCCEEEEEEcCcceeeeeeeeccccccc------ccCCccceEECC------CCCEEEEEcCCCCeEEEEECCC
Confidence 4455567999999999998877766533110000 011234678888 78876554 4567899999986
Q ss_pred cceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEe-cCCCeEE
Q 017194 240 ELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISG-GNDKLVK 318 (375)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~-~~dg~i~ 318 (375)
.+.. ..+ .+...+.+++|+ |+|++|+++ +.+|.|+
T Consensus 239 ~~~~----------------------------------------~~~-~~~~~~~~~~~~---~~g~~l~~~~~~~~~i~ 274 (300)
T TIGR03866 239 YEVL----------------------------------------DYL-LVGQRVWQLAFT---PDEKYLLTTNGVSNDVS 274 (300)
T ss_pred CcEE----------------------------------------EEE-EeCCCcceEEEC---CCCCEEEEEcCCCCeEE
Confidence 4211 111 123468899999 999998876 5689999
Q ss_pred EEeCCCceeeeecchhhhhhhhcccccceeeeeecC
Q 017194 319 VWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTP 354 (375)
Q Consensus 319 iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 354 (375)
+||+.++ +.+..+.. ....+.++++|
T Consensus 275 v~d~~~~---------~~~~~~~~-~~~~~~~~~~~ 300 (300)
T TIGR03866 275 VIDVAAL---------KVIKSIKV-GRLPWGVVVRP 300 (300)
T ss_pred EEECCCC---------cEEEEEEc-ccccceeEeCC
Confidence 9999998 43333332 34557776654
No 142
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=1.9e-28 Score=214.91 Aligned_cols=288 Identities=16% Similarity=0.167 Sum_probs=226.5
Q ss_pred EEEEecCCCCEEEEe----------CCCCcEEEEecccC--c----eeeEeeecCccEEEEEEeCCCCe----EEEEcCC
Q 017194 20 CCIASRDRPGFVASS----------GEDGCICWFDLRSK--D----VQLVTDVGNGPVTSLCFKSGNED----IIYVSSG 79 (375)
Q Consensus 20 ~~~~~~~~~~~l~s~----------~~d~~i~iw~~~~~--~----~~~~~~~~~~~v~~l~~~~~~~~----l~~~~~d 79 (375)
.++|+|....++|+| +.+.++-||.+.-. + .+..+. .....+.|+|.+.+.. |+.|..|
T Consensus 11 ~~awSp~~~~~laagt~aq~~D~sfst~~slEifeld~~~~~~dlk~~~s~~-s~~rF~kL~W~~~g~~~~GlIaGG~ed 89 (1049)
T KOG0307|consen 11 TFAWSPASPPLLAAGTAAQQFDASFSTSASLEIFELDFSDESSDLKPVGSLQ-SSNRFNKLAWGSYGSHSHGLIAGGLED 89 (1049)
T ss_pred eEEecCCCchhhHHHhhhhccccccccccccceeeecccCcccccccccccc-ccccceeeeecccCCCccceeeccccC
Confidence 368999843356655 33556667765422 2 223333 2567899999987766 7788889
Q ss_pred CeEEEEECCC---CCcccccccccCCCcceeEEEEcCCC-CeEEEEeCCCcEEEEeCcCceeeeeEe-cCcccceeEEEE
Q 017194 80 KEVKSFDVHM---PASWRPLESYNYNKEEINQIVCNPKS-SFLACADDGGDVKIIDIRQHCLYKSLR-AGHSSICSSVQF 154 (375)
Q Consensus 80 ~~i~iwd~~~---~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~~v~~~~~ 154 (375)
|.|.+||... +.....+..+..|.+.|..+.|++.. ++||+|+.||.|.|||+...+.-..+. ....+.|.+++|
T Consensus 90 G~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsW 169 (1049)
T KOG0307|consen 90 GNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCLSW 169 (1049)
T ss_pred CceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEecc
Confidence 9999999875 45566777888899999999999965 599999999999999998755444431 124678999999
Q ss_pred eeCCCcEEEEeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCC---c
Q 017194 155 IPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDG---V 231 (375)
Q Consensus 155 ~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg---~ 231 (375)
+..-..+|++++.+|++.|||++..+++..+.... ....+..++|+|. +...+++++.|. .
T Consensus 170 NrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~-----------~~~~~S~l~WhP~-----~aTql~~As~dd~~Pv 233 (1049)
T KOG0307|consen 170 NRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTP-----------GRMHCSVLAWHPD-----HATQLLVASGDDSAPV 233 (1049)
T ss_pred chhhhHHhhccCCCCCceeccccCCCcccccccCC-----------CccceeeeeeCCC-----CceeeeeecCCCCCce
Confidence 98877689999999999999999988777766431 1135789999995 556677777654 6
Q ss_pred EEEEeCCCcceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEe
Q 017194 232 VDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISG 311 (375)
Q Consensus 232 i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~ 311 (375)
|.+||++... ..++.+.+|...|.++.|++ .|..+|+++
T Consensus 234 iqlWDlR~as---------------------------------------sP~k~~~~H~~GilslsWc~--~D~~lllSs 272 (1049)
T KOG0307|consen 234 IQLWDLRFAS---------------------------------------SPLKILEGHQRGILSLSWCP--QDPRLLLSS 272 (1049)
T ss_pred eEeecccccC---------------------------------------CchhhhcccccceeeeccCC--CCchhhhcc
Confidence 9999998532 34457789999999999995 455899999
Q ss_pred cCCCeEEEEeCCCceeeeecchhhhhhhhcccccceeeeeecCCCCCcEEEeeCCCeEEEEec
Q 017194 312 GNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSI 374 (375)
Q Consensus 312 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~iw~~ 374 (375)
+.|+.|.+|+.+++ +++..+......+..+.|.|.+...++.++.||.|.|+.+
T Consensus 273 gkD~~ii~wN~~tg---------Evl~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl 326 (1049)
T KOG0307|consen 273 GKDNRIICWNPNTG---------EVLGELPAQGNWCFDVQWCPRNPSVMAAASFDGKISIYSL 326 (1049)
T ss_pred cCCCCeeEecCCCc---------eEeeecCCCCcceeeeeecCCCcchhhhheeccceeeeee
Confidence 99999999999998 7777888888899999999988889999999999999986
No 143
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.96 E-value=3.5e-27 Score=194.93 Aligned_cols=167 Identities=18% Similarity=0.162 Sum_probs=129.5
Q ss_pred CCeeeecCCCceeEEEEecCCCCEEEEeCCCCcEEEEecccCcee------eEeeecCccEEEEEEeCCCCeEEEEcCCC
Q 017194 7 KPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQ------LVTDVGNGPVTSLCFKSGNEDIIYVSSGK 80 (375)
Q Consensus 7 ~~~~l~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~------~~~~~~~~~v~~l~~~~~~~~l~~~~~d~ 80 (375)
.+..|.+|.+.|+.+.|+|-...+||+|+.|..|+||.+..+-.. ..+.+.+-.|.++.|+|...-|++.+..|
T Consensus 71 ~i~~l~~H~d~VtDl~FspF~D~LLAT~S~D~~VKiW~lp~g~~q~LSape~~~g~~~~~vE~l~fHpTaDgil~s~a~g 150 (1012)
T KOG1445|consen 71 DIGILAAHGDQVTDLGFSPFADELLATCSRDEPVKIWKLPRGHSQKLSAPEIDVGGGNVIVECLRFHPTADGILASGAHG 150 (1012)
T ss_pred ccceeecccceeeccCccccchhhhhcccCCCeeEEEecCCCcccccCCcceeecCCceEEEEeecccCcCceEEeccCc
Confidence 455788999999999999987789999999999999999854321 22233456788999999887788888899
Q ss_pred eEEEEECCCCCcccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcC-ceeeeeEecCcccc-eeEEEEeeCC
Q 017194 81 EVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQ-HCLYKSLRAGHSSI-CSSVQFIPWK 158 (375)
Q Consensus 81 ~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~-v~~~~~~~~~ 158 (375)
.+++||+.++ +.+..+.+|...|.+..|+.||.++++++.|..|+|||.+. ++.++... +|.+. =..+.|..+-
T Consensus 151 ~v~i~D~stq---k~~~el~~h~d~vQSa~WseDG~llatscKdkqirifDPRa~~~piQ~te-~H~~~rdsRv~w~Gn~ 226 (1012)
T KOG1445|consen 151 SVYITDISTQ---KTAVELSGHTDKVQSADWSEDGKLLATSCKDKQIRIFDPRASMEPIQTTE-GHGGMRDSRVLWAGNW 226 (1012)
T ss_pred eEEEEEcccC---ceeecccCCchhhhccccccCCceEeeecCCcceEEeCCccCCCcccccc-ccccchhheeeeccch
Confidence 9999999975 45556677899999999999999999999999999999984 56677776 77653 2245565554
Q ss_pred CcEEEEeec----CCeEEEeeCCC
Q 017194 159 PWEVISGGL----DSKLVMWDFSK 178 (375)
Q Consensus 159 ~~~l~~~~~----d~~i~~wd~~~ 178 (375)
. .|++.+. -..|++||.+.
T Consensus 227 ~-rlisTGF~~~R~reV~~~Dtr~ 249 (1012)
T KOG1445|consen 227 E-RLISTGFTTKRIREVRAYDTRK 249 (1012)
T ss_pred h-hhhhcccchhhheeeeeeeccc
Confidence 4 3444443 34678888753
No 144
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.96 E-value=2.3e-27 Score=183.78 Aligned_cols=258 Identities=15% Similarity=0.171 Sum_probs=193.0
Q ss_pred ecCccEEEEEEeCCCC--eEEEEcCCCeEEEEECCC-------------CCcccccccccCCCcceeEEEEcCC-CCeEE
Q 017194 56 VGNGPVTSLCFKSGNE--DIIYVSSGKEVKSFDVHM-------------PASWRPLESYNYNKEEINQIVCNPK-SSFLA 119 (375)
Q Consensus 56 ~~~~~v~~l~~~~~~~--~l~~~~~d~~i~iwd~~~-------------~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~ 119 (375)
.|.+.++.+.-.+-++ +.++-+..|.|+||++.. ....+++.++.+|...=..++|||- ...|+
T Consensus 149 ~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~Ll 228 (440)
T KOG0302|consen 149 PHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRLL 228 (440)
T ss_pred ccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccccc
Confidence 4667777777766543 455556679999999863 1234566677788888899999993 23588
Q ss_pred EEeCCCcEEEEeCcCcee---eeeEecCcccceeEEEEeeCCCcEEEEeecCCeEEEeeCCCCCcceEEe-cCCCCCCCC
Q 017194 120 CADDGGDVKIIDIRQHCL---YKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVN-FGLPENNGN 195 (375)
Q Consensus 120 ~~~~dg~i~iwd~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~-~~~~~~~~~ 195 (375)
+|.--+.|++|...++.- ...|. +|+..|..++|+|..+.+|++|+.||+|+|||+|.+.....+. ..
T Consensus 229 sGDc~~~I~lw~~~~g~W~vd~~Pf~-gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kA------- 300 (440)
T KOG0302|consen 229 SGDCVKGIHLWEPSTGSWKVDQRPFT-GHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKA------- 300 (440)
T ss_pred cCccccceEeeeeccCceeecCcccc-ccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEeec-------
Confidence 888788999999887632 33456 8999999999999988899999999999999999883322221 22
Q ss_pred CCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCcceeecccccCCCCCCceeecccccceeeeeeeecC
Q 017194 196 AGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQS 275 (375)
Q Consensus 196 ~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~ 275 (375)
|...|+.|.|+. +..+|++|+.||.++|||++..+
T Consensus 301 -----h~sDVNVISWnr------~~~lLasG~DdGt~~iwDLR~~~---------------------------------- 335 (440)
T KOG0302|consen 301 -----HNSDVNVISWNR------REPLLASGGDDGTLSIWDLRQFK---------------------------------- 335 (440)
T ss_pred -----cCCceeeEEccC------CcceeeecCCCceEEEEEhhhcc----------------------------------
Confidence 578999999998 56699999999999999999732
Q ss_pred CcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEecCCCeEEEEeCCCceeeee----cchh---hhhhhhccc--ccc
Q 017194 276 GGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQT----SINN---DLLIKNINL--NKK 346 (375)
Q Consensus 276 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~----~~~~---~~~~~~~~~--~~~ 346 (375)
..+++..++-|..+|+++.|+| .+...|++++.|.+|.+||+..-..... .... -+.+.+.-| ...
T Consensus 336 ---~~~pVA~fk~Hk~pItsieW~p--~e~s~iaasg~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke 410 (440)
T KOG0302|consen 336 ---SGQPVATFKYHKAPITSIEWHP--HEDSVIAASGEDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKE 410 (440)
T ss_pred ---CCCcceeEEeccCCeeEEEecc--ccCceEEeccCCCcEEEEEeeccCChhhhccccccchhcCCceeEEEecchhH
Confidence 1256678999999999999996 5667899999999999999976433100 0000 011122334 346
Q ss_pred eeeeeecCCCCCcEEEeeCCCeEEEE
Q 017194 347 VNWLCTTPTESENLVVCDTSKVVKVY 372 (375)
Q Consensus 347 v~~~~~~~~~~~~l~s~~~dg~v~iw 372 (375)
+..+.|++....+|++.+.|| +.||
T Consensus 411 ~KevhWH~QiPG~lvsTa~dG-fnVf 435 (440)
T KOG0302|consen 411 VKEVHWHRQIPGLLVSTAIDG-FNVF 435 (440)
T ss_pred hhhheeccCCCCeEEEecccc-eeEE
Confidence 788999987778999999998 4444
No 145
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.95 E-value=2.1e-26 Score=178.60 Aligned_cols=265 Identities=16% Similarity=0.197 Sum_probs=193.8
Q ss_pred ecCCCceeEEEEecCC-CCEEEEeCCCCcEEEEeccc----------------CceeeEeeecCccEEEEEEeCCCC-eE
Q 017194 12 RGHKATATCCIASRDR-PGFVASSGEDGCICWFDLRS----------------KDVQLVTDVGNGPVTSLCFKSGNE-DI 73 (375)
Q Consensus 12 ~~h~~~i~~~~~~~~~-~~~l~s~~~d~~i~iw~~~~----------------~~~~~~~~~~~~~v~~l~~~~~~~-~l 73 (375)
-.|.+.|+.+...+-+ ..+.|+=+..|.|.||++.. .+++.++.+|...=+.|+|||-.. .|
T Consensus 148 i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~L 227 (440)
T KOG0302|consen 148 IPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRL 227 (440)
T ss_pred cccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeeccccccccc
Confidence 3577888888877762 34566668889999999752 234778888999999999999322 47
Q ss_pred EEEcCCCeEEEEECCCCCcccccccccCCCcceeEEEEcCC-CCeEEEEeCCCcEEEEeCcCcee--eeeEecCccccee
Q 017194 74 IYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPK-SSFLACADDGGDVKIIDIRQHCL--YKSLRAGHSSICS 150 (375)
Q Consensus 74 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~--~~~~~~~~~~~v~ 150 (375)
++|..-+.|++|...++.-..-...+.+|+..|-.++|+|. ...|++|+-||+|+|||++.+.. ....+ .|.+.|+
T Consensus 228 lsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~k-Ah~sDVN 306 (440)
T KOG0302|consen 228 LSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTK-AHNSDVN 306 (440)
T ss_pred ccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEee-ccCCcee
Confidence 88888899999999886433334456679999999999995 45789999999999999997722 22235 8999999
Q ss_pred EEEEeeCCCcEEEEeecCCeEEEeeCCC---CCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEe
Q 017194 151 SVQFIPWKPWEVISGGLDSKLVMWDFSK---GRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAK 227 (375)
Q Consensus 151 ~~~~~~~~~~~l~~~~~d~~i~~wd~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~ 227 (375)
.|.|+..-+ +|++|+.||+++|||+++ ++++..++. |..+|++|.|+|. +...+++++
T Consensus 307 VISWnr~~~-lLasG~DdGt~~iwDLR~~~~~~pVA~fk~-------------Hk~pItsieW~p~-----e~s~iaasg 367 (440)
T KOG0302|consen 307 VISWNRREP-LLASGGDDGTLSIWDLRQFKSGQPVATFKY-------------HKAPITSIEWHPH-----EDSVIAASG 367 (440)
T ss_pred eEEccCCcc-eeeecCCCceEEEEEhhhccCCCcceeEEe-------------ccCCeeEEEeccc-----cCceEEecc
Confidence 999999988 899999999999999986 456677775 5799999999996 778899999
Q ss_pred cCCcEEEEeCCCcceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcE
Q 017194 228 GDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKY 307 (375)
Q Consensus 228 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~ 307 (375)
.|.+|.+||+....-.......... + | ..-..++++.-.+ ...+..+.|++. -..+
T Consensus 368 ~D~QitiWDlsvE~D~ee~~~~a~~----------~--L---------~dlPpQLLFVHqG-Qke~KevhWH~Q--iPG~ 423 (440)
T KOG0302|consen 368 EDNQITIWDLSVEADEEEIDQEAAE----------G--L---------QDLPPQLLFVHQG-QKEVKEVHWHRQ--IPGL 423 (440)
T ss_pred CCCcEEEEEeeccCChhhhcccccc----------c--h---------hcCCceeEEEecc-hhHhhhheeccC--CCCe
Confidence 9999999999853321111100000 0 0 0111123333223 456778889852 3348
Q ss_pred EEEecCCCeEEEEe
Q 017194 308 LISGGNDKLVKVWD 321 (375)
Q Consensus 308 l~s~~~dg~i~iwd 321 (375)
|++.+.|| +.||.
T Consensus 424 lvsTa~dG-fnVfk 436 (440)
T KOG0302|consen 424 LVSTAIDG-FNVFK 436 (440)
T ss_pred EEEecccc-eeEEE
Confidence 88888888 55553
No 146
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.95 E-value=2.8e-26 Score=172.42 Aligned_cols=226 Identities=17% Similarity=0.242 Sum_probs=181.7
Q ss_pred eecCccEEEEEEeC-CCCeEEEEcCCCeEEEEECCCCCcc------------cccccccCCCcceeEEEEcC-CCCeEEE
Q 017194 55 DVGNGPVTSLCFKS-GNEDIIYVSSGKEVKSFDVHMPASW------------RPLESYNYNKEEINQIVCNP-KSSFLAC 120 (375)
Q Consensus 55 ~~~~~~v~~l~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~------------~~~~~~~~~~~~v~~~~~~~-~~~~l~~ 120 (375)
..|.+.|+++...+ .|+++++|+.||.|.+||++..... .......+|...|.++.|-| |.-.+.+
T Consensus 40 r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFts 119 (397)
T KOG4283|consen 40 RPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTS 119 (397)
T ss_pred ccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeec
Confidence 45889999999976 6899999999999999999864311 11223346888999999999 5668888
Q ss_pred EeCCCcEEEEeCcCceeeeeEecCcccceeEEEEeeCCC--cEEEEeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCc
Q 017194 121 ADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKP--WEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQ 198 (375)
Q Consensus 121 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~ 198 (375)
++-|.++++||..+.+....|+ ..+.|.+-+++|-.. .++++|..+-+|++.|+.+|.....+. +
T Consensus 120 sSFDhtlKVWDtnTlQ~a~~F~--me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~Ls-G---------- 186 (397)
T KOG4283|consen 120 SSFDHTLKVWDTNTLQEAVDFK--MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLS-G---------- 186 (397)
T ss_pred ccccceEEEeecccceeeEEee--cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeec-c----------
Confidence 9999999999999999888887 678888888888542 378889999999999999999999887 4
Q ss_pred ccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCcceeecccccCCCCCCceeecccccceeeeeeeecCCcc
Q 017194 199 CYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGK 278 (375)
Q Consensus 199 ~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~ 278 (375)
|...|.++.|+|. ..-.|++|+.||.|++||++...--+ ...+..+..
T Consensus 187 --Hr~~vlaV~Wsp~-----~e~vLatgsaDg~irlWDiRrasgcf-------------------------~~lD~hn~k 234 (397)
T KOG4283|consen 187 --HRDGVLAVEWSPS-----SEWVLATGSADGAIRLWDIRRASGCF-------------------------RVLDQHNTK 234 (397)
T ss_pred --ccCceEEEEeccC-----ceeEEEecCCCceEEEEEeeccccee-------------------------EEeecccCc
Confidence 5789999999995 56678999999999999999631111 112222233
Q ss_pred eeEeeeeecCCCccEEEEEEeecCCCCcEEEEecCCCeEEEEeCCCceee
Q 017194 279 RLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGV 328 (375)
Q Consensus 279 ~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd~~~~~~~ 328 (375)
..+.+..-..|.+.++.++|+ .++.++++++.|..+++|+..++...
T Consensus 235 ~~p~~~~n~ah~gkvngla~t---Sd~~~l~~~gtd~r~r~wn~~~G~nt 281 (397)
T KOG4283|consen 235 RPPILKTNTAHYGKVNGLAWT---SDARYLASCGTDDRIRVWNMESGRNT 281 (397)
T ss_pred cCccccccccccceeeeeeec---ccchhhhhccCccceEEeecccCccc
Confidence 334445567899999999999 99999999999999999999988643
No 147
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.95 E-value=3.1e-26 Score=191.76 Aligned_cols=249 Identities=13% Similarity=0.142 Sum_probs=209.5
Q ss_pred CCCceeEEEEecCCCCEEEEeCCCCcEEEEecccCceeeEeeecCccEEEEEEeC---CCCeEEEEcCCCeEEEEECCCC
Q 017194 14 HKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKS---GNEDIIYVSSGKEVKSFDVHMP 90 (375)
Q Consensus 14 h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~---~~~~l~~~~~d~~i~iwd~~~~ 90 (375)
-.-.+.+++.+|+ +++||+|..-|+++||++.+.+....+++|...|.|+.|+. ..++|++++.|.-|.|+|+..
T Consensus 458 ~r~G~R~~~vSp~-gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~r- 535 (1080)
T KOG1408|consen 458 SRFGFRALAVSPD-GQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKR- 535 (1080)
T ss_pred cccceEEEEECCC-cceecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEeccc-
Confidence 4567999999999 99999999999999999999999999999999999999984 346899999999999999874
Q ss_pred CcccccccccCCCcceeEEEEcCCC--CeEEEEeCCCcEEEEeCcCceeeeeEecC----cccceeEEEEeeCCCcEEEE
Q 017194 91 ASWRPLESYNYNKEEINQIVCNPKS--SFLACADDGGDVKIIDIRQHCLYKSLRAG----HSSICSSVQFIPWKPWEVIS 164 (375)
Q Consensus 91 ~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~----~~~~v~~~~~~~~~~~~l~~ 164 (375)
....++++.+|...|+++.|..+| ..+++++.|..|.+--.....-...+... ....+..|+..|..+ ++++
T Consensus 536 -ny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k-~v~t 613 (1080)
T KOG1408|consen 536 -NYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSK-LVVT 613 (1080)
T ss_pred -ccchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcc-eEEE
Confidence 467888899999999999998876 67888889987754332211111222201 134788999999998 7999
Q ss_pred eecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCcceee
Q 017194 165 GGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNIS 244 (375)
Q Consensus 165 ~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~ 244 (375)
++.|..|+|||+.+++..+.++-.. -+.+..-.+...| .|.++++.+.|.++.++|..++
T Consensus 614 ~cQDrnirif~i~sgKq~k~FKgs~----------~~eG~lIKv~lDP------SgiY~atScsdktl~~~Df~sg---- 673 (1080)
T KOG1408|consen 614 VCQDRNIRIFDIESGKQVKSFKGSR----------DHEGDLIKVILDP------SGIYLATSCSDKTLCFVDFVSG---- 673 (1080)
T ss_pred EecccceEEEeccccceeeeecccc----------cCCCceEEEEECC------CccEEEEeecCCceEEEEeccc----
Confidence 9999999999999999999998431 1345666777877 7999999999999999999986
Q ss_pred cccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEecCCCeEEEEeCCC
Q 017194 245 RSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSR 324 (375)
Q Consensus 245 ~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd~~~ 324 (375)
+++.++.+|...|+.+.|. +|-+.|++.+.||.|.||.+..
T Consensus 674 ------------------------------------EcvA~m~GHsE~VTG~kF~---nDCkHlISvsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 674 ------------------------------------ECVAQMTGHSEAVTGVKFL---NDCKHLISVSGDGCIFVWKLPL 714 (1080)
T ss_pred ------------------------------------hhhhhhcCcchheeeeeec---ccchhheeecCCceEEEEECch
Confidence 6677899999999999999 9999999999999999999986
Q ss_pred c
Q 017194 325 F 325 (375)
Q Consensus 325 ~ 325 (375)
.
T Consensus 715 ~ 715 (1080)
T KOG1408|consen 715 T 715 (1080)
T ss_pred h
Confidence 4
No 148
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.95 E-value=4.5e-26 Score=182.97 Aligned_cols=266 Identities=17% Similarity=0.167 Sum_probs=210.0
Q ss_pred ceeEEEEecCCCCEEEEeCCCCcEEEEecccC--ceeeEeeecCccEEEEEEeCCCCeEEEEcCCCeEEEEECCCCCccc
Q 017194 17 TATCCIASRDRPGFVASSGEDGCICWFDLRSK--DVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWR 94 (375)
Q Consensus 17 ~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~--~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~ 94 (375)
.+.++.|+..+.-.+++.+.|..+++|.-... +....-......-.|++......++++|+..+.|+|||++. ..
T Consensus 36 g~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~---kl 112 (673)
T KOG4378|consen 36 GDFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGDNAFCVACASQSLYEISGGQSGCVKIWDLRA---KL 112 (673)
T ss_pred cceeeeccccceEEEeecCCceeEEEecccCCCCccceeeccccchHHHHhhhhcceeeeccCcCceeeehhhHH---HH
Confidence 38889998873233445567888999975432 11111111122334444444558999999999999999983 34
Q ss_pred ccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCceeeeeEecCcccceeEEEEeeCCCcEEEEeecCCeEEEe
Q 017194 95 PLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMW 174 (375)
Q Consensus 95 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~w 174 (375)
..+.+++|...|+++.++....+||+++..|.|.|..+.++.....|..+....|+-+.|+|..+.+|.+++.+|.|.+|
T Consensus 113 ~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~Vtlw 192 (673)
T KOG4378|consen 113 IHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLW 192 (673)
T ss_pred HhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecCCCCeEEEeecccccceeeEeeccCCeEEEE
Confidence 45567788999999999999999999999999999999998888888723345677899999998788999999999999
Q ss_pred eCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCcceeecccccCCCCC
Q 017194 175 DFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLK 254 (375)
Q Consensus 175 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~ 254 (375)
|+....++..+.-. |..+...|+|+|. +..+|++.+.|..|.+||.+..+.
T Consensus 193 Dv~g~sp~~~~~~~------------HsAP~~gicfsps-----ne~l~vsVG~Dkki~~yD~~s~~s------------ 243 (673)
T KOG4378|consen 193 DVQGMSPIFHASEA------------HSAPCRGICFSPS-----NEALLVSVGYDKKINIYDIRSQAS------------ 243 (673)
T ss_pred eccCCCcccchhhh------------ccCCcCcceecCC-----ccceEEEecccceEEEeecccccc------------
Confidence 99988887777655 7788999999997 888999999999999999996311
Q ss_pred CceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEecCCCeEEEEeCCCceeeeecchh
Q 017194 255 GSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINN 334 (375)
Q Consensus 255 ~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 334 (375)
...+. -..+...++|+ ++|.+|++|...|.|..||++..+
T Consensus 244 ----------------------------~~~l~-y~~Plstvaf~---~~G~~L~aG~s~G~~i~YD~R~~k-------- 283 (673)
T KOG4378|consen 244 ----------------------------TDRLT-YSHPLSTVAFS---ECGTYLCAGNSKGELIAYDMRSTK-------- 283 (673)
T ss_pred ----------------------------cceee-ecCCcceeeec---CCceEEEeecCCceEEEEecccCC--------
Confidence 11121 24678999999 999999999999999999999876
Q ss_pred hhhhhhcccccceeeeeecC
Q 017194 335 DLLIKNINLNKKVNWLCTTP 354 (375)
Q Consensus 335 ~~~~~~~~~~~~v~~~~~~~ 354 (375)
.++.....|...|++++|-|
T Consensus 284 ~Pv~v~sah~~sVt~vafq~ 303 (673)
T KOG4378|consen 284 APVAVRSAHDASVTRVAFQP 303 (673)
T ss_pred CCceEeeecccceeEEEeee
Confidence 66788889999999999988
No 149
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=5.2e-26 Score=174.21 Aligned_cols=289 Identities=13% Similarity=0.112 Sum_probs=202.4
Q ss_pred CEEEEeCCCCcEEEEecccCceeeEeeecCccEEEEEEeC--CCCeEEEEcCCCeEEEEECCCCCcccccccccCCCcce
Q 017194 29 GFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKS--GNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEI 106 (375)
Q Consensus 29 ~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~--~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v 106 (375)
..+|++-.+|.|++||..+++.+..++++...++.++|.. ....+.+++.||+|++||++.......+..-.....+.
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f 120 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPF 120 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcc
Confidence 4688888999999999999999999999999999999976 45678999999999999999765544333222223577
Q ss_pred eEEEEcCCCCeEEEEe----CCCcEEEEeCcCcee-eeeEecCcccceeEEEEeeCCCcEEEEeecCCeEEEeeCCCCC-
Q 017194 107 NQIVCNPKSSFLACAD----DGGDVKIIDIRQHCL-YKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGR- 180 (375)
Q Consensus 107 ~~~~~~~~~~~l~~~~----~dg~i~iwd~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~- 180 (375)
.+++....++.+++|. .+-.|.+||++..+. +..+...|...|++++|+|..+.+|++|+.||-|.+||+....
T Consensus 121 ~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~E 200 (376)
T KOG1188|consen 121 ICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNE 200 (376)
T ss_pred eEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcc
Confidence 7888877888888886 366799999997765 7777668999999999999999899999999999999997542
Q ss_pred ---cceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCcceeecccccCCCCCCce
Q 017194 181 ---PNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQ 257 (375)
Q Consensus 181 ---~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~ 257 (375)
.+..+. +...|..+.|... ..+.+.+-+......+|+++.+........+....
T Consensus 201 eDaL~~viN--------------~~sSI~~igw~~~-----~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~---- 257 (376)
T KOG1188|consen 201 EDALLHVIN--------------HGSSIHLIGWLSK-----KYKRIMCLTHMETFAIYELEDGSEETWLENPDVSA---- 257 (376)
T ss_pred hhhHHHhhc--------------ccceeeeeeeecC-----CcceEEEEEccCceeEEEccCCChhhcccCccchh----
Confidence 233333 3467999999862 33578888999999999999765332222110000
Q ss_pred eecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEecC-CCeEEEEeCCC---ceeeeecch
Q 017194 258 STSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGN-DKLVKVWDCSR---FQGVQTSIN 333 (375)
Q Consensus 258 ~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~-dg~i~iwd~~~---~~~~~~~~~ 333 (375)
....+...-..-|... +| .+...++.++. -|...++-+.. +...
T Consensus 258 -----------------------~d~r~~~~~dY~I~~~--~~--~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~----- 305 (376)
T KOG1188|consen 258 -----------------------DDLRKEDNCDYVINEH--SP--GDKDTCALAGTDSNKGTIFPLVDTSSGSLL----- 305 (376)
T ss_pred -----------------------hhHHhhhhhhheeecc--cC--CCcceEEEeccccCceeEEEeeeccccccc-----
Confidence 0000000001112221 11 34445554444 45555554442 2111
Q ss_pred hhhhhhhcc-cccceeeeeecCCCCCcEEEeeCCCeEEEEec
Q 017194 334 NDLLIKNIN-LNKKVNWLCTTPTESENLVVCDTSKVVKVYSI 374 (375)
Q Consensus 334 ~~~~~~~~~-~~~~v~~~~~~~~~~~~l~s~~~dg~v~iw~~ 374 (375)
..+..+.+ |..-|.++.|.. .+..+.||++||.+.+|..
T Consensus 306 -~~~a~l~g~~~eiVR~i~~~~-~~~~l~TGGEDG~l~~Wk~ 345 (376)
T KOG1188|consen 306 -TEPAILQGGHEEIVRDILFDV-KNDVLYTGGEDGLLQAWKV 345 (376)
T ss_pred -CccccccCCcHHHHHHHhhhc-ccceeeccCCCceEEEEec
Confidence 22233444 777788888876 7789999999999999974
No 150
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.95 E-value=8e-25 Score=164.13 Aligned_cols=280 Identities=18% Similarity=0.189 Sum_probs=207.5
Q ss_pred CCCcEEEEecccCce---eeEeeecCccEEEEEEeCCCCeEEEEcCC--------CeEEEEECCCCCc------cccccc
Q 017194 36 EDGCICWFDLRSKDV---QLVTDVGNGPVTSLCFKSGNEDIIYVSSG--------KEVKSFDVHMPAS------WRPLES 98 (375)
Q Consensus 36 ~d~~i~iw~~~~~~~---~~~~~~~~~~v~~l~~~~~~~~l~~~~~d--------~~i~iwd~~~~~~------~~~~~~ 98 (375)
.|+.|.+.+++.+.. -+.+..|.+.|..++-+|-.+.+++.... ..+.||.+..... ++.+..
T Consensus 38 ~dNqVhll~~d~e~s~l~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~ 117 (370)
T KOG1007|consen 38 EDNQVHLLRLDSEGSELLSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVAS 117 (370)
T ss_pred CcceeEEEEecCccchhhhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhc
Confidence 367788888765442 34566688999999999976655543322 2678999865322 223333
Q ss_pred cc-CCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCcee-eeeEe----cCcccceeEEEEeeCCCcEEEEeecCCeEE
Q 017194 99 YN-YNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCL-YKSLR----AGHSSICSSVQFIPWKPWEVISGGLDSKLV 172 (375)
Q Consensus 99 ~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~----~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~ 172 (375)
+. .+-+.|.|+.|.|++..+++-. |..|.+|++..+.. +..+. .+++...++-+|+|..+..-+....|+++.
T Consensus 118 Ldteavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~d~tl~ 196 (370)
T KOG1007|consen 118 LDTEAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATTSDSTLQ 196 (370)
T ss_pred CCHHHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEeCCCcEE
Confidence 32 3446899999999999998875 78899999987654 33332 145567788899994332345556689999
Q ss_pred EeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCcceeecccccCCC
Q 017194 173 MWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKP 252 (375)
Q Consensus 173 ~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~ 252 (375)
.||+++.+....++-. |...+..+.|+|. ...+|++++.||.|++||.+..+
T Consensus 197 ~~D~RT~~~~~sI~dA------------Hgq~vrdlDfNpn-----kq~~lvt~gDdgyvriWD~R~tk----------- 248 (370)
T KOG1007|consen 197 FWDLRTMKKNNSIEDA------------HGQRVRDLDFNPN-----KQHILVTCGDDGYVRIWDTRKTK----------- 248 (370)
T ss_pred EEEccchhhhcchhhh------------hcceeeeccCCCC-----ceEEEEEcCCCccEEEEeccCCC-----------
Confidence 9999999888888755 6678999999994 45678899999999999999642
Q ss_pred CCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEecCCCeEEEEeCCCceeee---
Q 017194 253 LKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQ--- 329 (375)
Q Consensus 253 ~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~--- 329 (375)
..+.++.+|...|+++.|.| ...++|++|+.|..|.+|...+-...+
T Consensus 249 ----------------------------~pv~el~~HsHWvW~VRfn~--~hdqLiLs~~SDs~V~Lsca~svSSE~qi~ 298 (370)
T KOG1007|consen 249 ----------------------------FPVQELPGHSHWVWAVRFNP--EHDQLILSGGSDSAVNLSCASSVSSEQQIE 298 (370)
T ss_pred ----------------------------ccccccCCCceEEEEEEecC--ccceEEEecCCCceeEEEeccccccccccc
Confidence 44568899999999999996 346799999999999999876543110
Q ss_pred -----------------ecchhhhhhhhcccccceeeeeecCCCCCcEEEeeCCCeEEEEec
Q 017194 330 -----------------TSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSI 374 (375)
Q Consensus 330 -----------------~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~iw~~ 374 (375)
.......+..+..|...|.+++|+..|.-.+|+-+.||++.|=++
T Consensus 299 ~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRviIs~V 360 (370)
T KOG1007|consen 299 FEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRVIISSV 360 (370)
T ss_pred cccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEeccCceEEeecC
Confidence 001112344677899999999999989999999999999987554
No 151
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.94 E-value=1.4e-24 Score=165.38 Aligned_cols=277 Identities=17% Similarity=0.255 Sum_probs=208.5
Q ss_pred eeEEEEecCCCCEEEEeCCCCcEEEEecccCce------------eeEeee-cCccEEEEEEe-------CCCCeEEEEc
Q 017194 18 ATCCIASRDRPGFVASSGEDGCICWFDLRSKDV------------QLVTDV-GNGPVTSLCFK-------SGNEDIIYVS 77 (375)
Q Consensus 18 i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~------------~~~~~~-~~~~v~~l~~~-------~~~~~l~~~~ 77 (375)
...+.|+|| |..|++-+.|..+.+|++..... ...++. ....|...+|- |+..++++.+
T Consensus 52 ~kgckWSPD-GSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ss 130 (406)
T KOG2919|consen 52 LKGCKWSPD-GSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSS 130 (406)
T ss_pred hccceeCCC-CceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeecc
Confidence 456799999 89999999999999999752110 111111 24667787875 6778899999
Q ss_pred CCCeEEEEECCCCCcccccccccCCCc---ceeEEEEcCCCCeEEEEeCCCcEEEEeC-cCceee---eeEe---cCccc
Q 017194 78 SGKEVKSFDVHMPASWRPLESYNYNKE---EINQIVCNPKSSFLACADDGGDVKIIDI-RQHCLY---KSLR---AGHSS 147 (375)
Q Consensus 78 ~d~~i~iwd~~~~~~~~~~~~~~~~~~---~v~~~~~~~~~~~l~~~~~dg~i~iwd~-~~~~~~---~~~~---~~~~~ 147 (375)
.+.-|++||.-+++.......+. |.. ...+++|+|||.+|++|. ..+|+++|+ +.|+.. .++. .+..+
T Consensus 131 r~~PIh~wdaftG~lraSy~~yd-h~de~taAhsL~Fs~DGeqlfaGy-krcirvFdt~RpGr~c~vy~t~~~~k~gq~g 208 (406)
T KOG2919|consen 131 RDQPIHLWDAFTGKLRASYRAYD-HQDEYTAAHSLQFSPDGEQLFAGY-KRCIRVFDTSRPGRDCPVYTTVTKGKFGQKG 208 (406)
T ss_pred ccCceeeeeccccccccchhhhh-hHHhhhhheeEEecCCCCeEeecc-cceEEEeeccCCCCCCcchhhhhcccccccc
Confidence 99999999999887655554443 233 345899999999999984 578999999 444321 1111 13467
Q ss_pred ceeEEEEeeCCCcEEEEeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEe
Q 017194 148 ICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAK 227 (375)
Q Consensus 148 ~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~ 227 (375)
.+.+++|+|.....++.++...++-||.-..+.++..+- + |.+.|+.+.|.+ +|+.|++|.
T Consensus 209 iisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llg-g------------h~gGvThL~~~e------dGn~lfsGa 269 (406)
T KOG2919|consen 209 IISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLG-G------------HGGGVTHLQWCE------DGNKLFSGA 269 (406)
T ss_pred eeeeeeccCCCCcceeeecccceeeeEecCCCCceeeec-c------------cCCCeeeEEecc------CcCeecccc
Confidence 889999999887689999999999999888777777765 4 688999999999 799999987
Q ss_pred c-CCcEEEEeCCCcceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCc-cEEEEEEeecCCCC
Q 017194 228 G-DGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTA-AASCVAFSMFGERG 305 (375)
Q Consensus 228 ~-dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~s~~~~~~ 305 (375)
. +..|..||++... ..+..+..|.. .-..|.|. ..|++
T Consensus 270 Rk~dkIl~WDiR~~~---------------------------------------~pv~~L~rhv~~TNQRI~FD-ld~~~ 309 (406)
T KOG2919|consen 270 RKDDKILCWDIRYSR---------------------------------------DPVYALERHVGDTNQRILFD-LDPKG 309 (406)
T ss_pred cCCCeEEEEeehhcc---------------------------------------chhhhhhhhccCccceEEEe-cCCCC
Confidence 4 7799999999632 34455666644 33444443 23899
Q ss_pred cEEEEecCCCeEEEEeCCCceeeeecchhhhhhhhcccccceeeeeecCCCCCcEEEeeC
Q 017194 306 KYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDT 365 (375)
Q Consensus 306 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~ 365 (375)
++|++|+.||.|++||++..- ..+..+..|+..++.++++| --.++++++.
T Consensus 310 ~~LasG~tdG~V~vwdlk~~g--------n~~sv~~~~sd~vNgvslnP-~mpilatssG 360 (406)
T KOG2919|consen 310 EILASGDTDGSVRVWDLKDLG--------NEVSVTGNYSDTVNGVSLNP-IMPILATSSG 360 (406)
T ss_pred ceeeccCCCccEEEEecCCCC--------CcccccccccccccceecCc-ccceeeeccC
Confidence 999999999999999999842 44567778999999999999 5567777764
No 152
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.94 E-value=4.5e-26 Score=183.25 Aligned_cols=237 Identities=15% Similarity=0.190 Sum_probs=197.8
Q ss_pred CCceeEEEEecCCCCEEEEeCCCCcEEEEecccCcee--eEeeecCccEEEEEEeCCCCeEEEEcCCCeEEEEECCCCCc
Q 017194 15 KATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQ--LVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPAS 92 (375)
Q Consensus 15 ~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~--~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i~iwd~~~~~~ 92 (375)
...|+++...|| ++.|++|+.-.++.|||+...... ..+....-..++++.+||.+..++++.||.|.|||+.+.
T Consensus 465 dnyiRSckL~pd-grtLivGGeastlsiWDLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq-- 541 (705)
T KOG0639|consen 465 DNYIRSCKLLPD-GRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQ-- 541 (705)
T ss_pred ccceeeeEecCC-CceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccc--
Confidence 467899999999 899999999999999999866543 233333456778999999999999999999999999853
Q ss_pred ccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCceeeeeEecCcccceeEEEEeeCCCcEEEEeecCCeEE
Q 017194 93 WRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLV 172 (375)
Q Consensus 93 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~ 172 (375)
..+..+.+|...+.|+.+++||..|.+|+-|.+|+.||+++++.+.... ..+.|.++.++|.+.+ +++|-+++.+.
T Consensus 542 -~~VrqfqGhtDGascIdis~dGtklWTGGlDntvRcWDlregrqlqqhd--F~SQIfSLg~cP~~dW-lavGMens~ve 617 (705)
T KOG0639|consen 542 -TLVRQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQHD--FSSQIFSLGYCPTGDW-LAVGMENSNVE 617 (705)
T ss_pred -eeeecccCCCCCceeEEecCCCceeecCCCccceeehhhhhhhhhhhhh--hhhhheecccCCCccc-eeeecccCcEE
Confidence 5677888999999999999999999999999999999999988877665 6789999999999995 99999999998
Q ss_pred EeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCcceeecccccCCC
Q 017194 173 MWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKP 252 (375)
Q Consensus 173 ~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~ 252 (375)
+-.....+.. .+.. |..-|.++.|.+ -|+++++.+.|+.+-.|...-+..++
T Consensus 618 vlh~skp~ky-qlhl-------------heScVLSlKFa~------cGkwfvStGkDnlLnawrtPyGasiF-------- 669 (705)
T KOG0639|consen 618 VLHTSKPEKY-QLHL-------------HESCVLSLKFAY------CGKWFVSTGKDNLLNAWRTPYGASIF-------- 669 (705)
T ss_pred EEecCCccce-eecc-------------cccEEEEEEecc------cCceeeecCchhhhhhccCcccccee--------
Confidence 8887644332 2221 578899999999 69999999999999999887653222
Q ss_pred CCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEecCCCeEEEEeC
Q 017194 253 LKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDC 322 (375)
Q Consensus 253 ~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd~ 322 (375)
..+ ....|.++.+| .|.+|++||+.|....||.+
T Consensus 670 --------------------------------qsk-E~SsVlsCDIS---~ddkyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 670 --------------------------------QSK-ESSSVLSCDIS---FDDKYIVTGSGDKKATVYEV 703 (705)
T ss_pred --------------------------------ecc-ccCcceeeeec---cCceEEEecCCCcceEEEEE
Confidence 222 25689999999 89999999999998888865
No 153
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=1.7e-24 Score=185.99 Aligned_cols=248 Identities=14% Similarity=0.175 Sum_probs=197.1
Q ss_pred ecCccEEEEEEeCCCCeEEEEcCCCeEEEEECCCC-CcccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcC
Q 017194 56 VGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMP-ASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQ 134 (375)
Q Consensus 56 ~~~~~v~~l~~~~~~~~l~~~~~d~~i~iwd~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 134 (375)
.|+...+.++|.|+|++|++++.||.|++|+.... .....+.. +...|.+++. ++.+|++|+.+++|.+|.+..
T Consensus 11 aht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~---~g~~v~~ia~--~s~~f~~~s~~~tv~~y~fps 85 (933)
T KOG1274|consen 11 AHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDI---SGELVSSIAC--YSNHFLTGSEQNTVLRYKFPS 85 (933)
T ss_pred hccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhc---cCceeEEEee--cccceEEeeccceEEEeeCCC
Confidence 58888999999999999999999999999997754 22233322 4667777765 455999999999999999988
Q ss_pred ceeeeeEecCcccceeEEEEeeCCCcEEEEeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCc
Q 017194 135 HCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDAD 214 (375)
Q Consensus 135 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 214 (375)
++.-..+. ...-++++++++.+|+ +++.|+.|-.|++-++.+......+. + |..+|.++.++|
T Consensus 86 ~~~~~iL~-Rftlp~r~~~v~g~g~-~iaagsdD~~vK~~~~~D~s~~~~lr-g------------h~apVl~l~~~p-- 148 (933)
T KOG1274|consen 86 GEEDTILA-RFTLPIRDLAVSGSGK-MIAAGSDDTAVKLLNLDDSSQEKVLR-G------------HDAPVLQLSYDP-- 148 (933)
T ss_pred CCccceee-eeeccceEEEEecCCc-EEEeecCceeEEEEeccccchheeec-c------------cCCceeeeeEcC--
Confidence 76654454 4567899999999999 79999999999999999888777776 3 578999999999
Q ss_pred cccCCCCEEEEEecCCcEEEEeCCCcceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCC-CccE
Q 017194 215 MLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGH-TAAA 293 (375)
Q Consensus 215 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v 293 (375)
++.+||+.+-||.|++||+.++.....+.... .....- ...+
T Consensus 149 ----~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~---------------------------------k~n~~~~s~i~ 191 (933)
T KOG1274|consen 149 ----KGNFLAVSSCDGKVQIWDLQDGILSKTLTGVD---------------------------------KDNEFILSRIC 191 (933)
T ss_pred ----CCCEEEEEecCceEEEEEcccchhhhhcccCC---------------------------------cccccccccee
Confidence 89999999999999999999764333222110 001111 4567
Q ss_pred EEEEEeecCCCCcEEEEecCCCeEEEEeCCCceeeeecchhhhhhhhc--ccccceeeeeecCCCCCcEEEeeCCCeEEE
Q 017194 294 SCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNI--NLNKKVNWLCTTPTESENLVVCDTSKVVKV 371 (375)
Q Consensus 294 ~~~~~s~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~s~~~dg~v~i 371 (375)
..++|+ |+|..++....|+.|++|+...... ...+. .+...+..+.|+| .|+|||+++.||.|.|
T Consensus 192 ~~~aW~---Pk~g~la~~~~d~~Vkvy~r~~we~---------~f~Lr~~~~ss~~~~~~wsP-nG~YiAAs~~~g~I~v 258 (933)
T KOG1274|consen 192 TRLAWH---PKGGTLAVPPVDNTVKVYSRKGWEL---------QFKLRDKLSSSKFSDLQWSP-NGKYIAASTLDGQILV 258 (933)
T ss_pred eeeeec---CCCCeEEeeccCCeEEEEccCCcee---------heeecccccccceEEEEEcC-CCcEEeeeccCCcEEE
Confidence 889999 8988888888899999999999842 22222 2444499999999 8999999999999999
Q ss_pred EecC
Q 017194 372 YSIS 375 (375)
Q Consensus 372 w~~~ 375 (375)
||++
T Consensus 259 Wnv~ 262 (933)
T KOG1274|consen 259 WNVD 262 (933)
T ss_pred Eecc
Confidence 9974
No 154
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.94 E-value=4.5e-25 Score=165.45 Aligned_cols=277 Identities=13% Similarity=0.150 Sum_probs=203.4
Q ss_pred eeeecCCCceeEEEEecCCCCEEEEeCCC-------CcEEEEecccCc---------eeeEee-ecCccEEEEEEeCCCC
Q 017194 9 RRLRGHKATATCCIASRDRPGFVASSGED-------GCICWFDLRSKD---------VQLVTD-VGNGPVTSLCFKSGNE 71 (375)
Q Consensus 9 ~~l~~h~~~i~~~~~~~~~~~~l~s~~~d-------~~i~iw~~~~~~---------~~~~~~-~~~~~v~~l~~~~~~~ 71 (375)
+.|..|.+.|+.++-+|.+.++|+|+..+ -.+.||.+.... ++..+. .+-+.|.|+.|.|++.
T Consensus 57 kvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns~ 136 (370)
T KOG1007|consen 57 KVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNSD 136 (370)
T ss_pred hhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCCC
Confidence 45677889999999999988888887552 247899986432 234443 3456899999999999
Q ss_pred eEEEEcCCCeEEEEECCCCCcc-ccccc--ccCCCcceeEEEEcC--CCCeEEEEeCCCcEEEEeCcCceeeeeEecCcc
Q 017194 72 DIIYVSSGKEVKSFDVHMPASW-RPLES--YNYNKEEINQIVCNP--KSSFLACADDGGDVKIIDIRQHCLYKSLRAGHS 146 (375)
Q Consensus 72 ~l~~~~~d~~i~iwd~~~~~~~-~~~~~--~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 146 (375)
.+++-. |..|.+|++..+... ..+.. -..+....++-+|+| +++.+++. .|+++..||+++.+....+...|.
T Consensus 137 klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt-~d~tl~~~D~RT~~~~~sI~dAHg 214 (370)
T KOG1007|consen 137 KLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATT-SDSTLQFWDLRTMKKNNSIEDAHG 214 (370)
T ss_pred eeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEe-CCCcEEEEEccchhhhcchhhhhc
Confidence 988777 899999999876542 22211 122456788889999 77777776 679999999999888777776899
Q ss_pred cceeEEEEeeCCCcEEEEeecCCeEEEeeCCCCC-cceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEE
Q 017194 147 SICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGR-PNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVV 225 (375)
Q Consensus 147 ~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~ 225 (375)
..|..+.|+|+...+|++|+.||.|++||.+..+ +++.+. + |..++.++.|+|. ..+++++
T Consensus 215 q~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~-~------------HsHWvW~VRfn~~-----hdqLiLs 276 (370)
T KOG1007|consen 215 QRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELP-G------------HSHWVWAVRFNPE-----HDQLILS 276 (370)
T ss_pred ceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccC-C------------CceEEEEEEecCc-----cceEEEe
Confidence 9999999999998899999999999999998754 444444 3 6789999999997 7889999
Q ss_pred EecCCcEEEEeCCCcceeecccc---c----CCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEE
Q 017194 226 AKGDGVVDVINIESELNISRSKS---T----TKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAF 298 (375)
Q Consensus 226 ~~~dg~i~i~d~~~~~~~~~~~~---~----~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 298 (375)
|+.|..|.+|....-........ . ..........-+|| .+.++..|...|++++|
T Consensus 277 ~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg------------------~l~tydehEDSVY~~aW 338 (370)
T KOG1007|consen 277 GGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDG------------------QLETYDEHEDSVYALAW 338 (370)
T ss_pred cCCCceeEEEeccccccccccccccccccCcchhhHHhccccccc------------------ccccccccccceEEEee
Confidence 99999999998764221111100 0 00000111111222 34478899999999999
Q ss_pred eecCCCCcEEEEecCCCeEEEEeCCCc
Q 017194 299 SMFGERGKYLISGGNDKLVKVWDCSRF 325 (375)
Q Consensus 299 s~~~~~~~~l~s~~~dg~i~iwd~~~~ 325 (375)
|. .|-=++|+-+.||.+.|=.+...
T Consensus 339 Ss--adPWiFASLSYDGRviIs~V~r~ 363 (370)
T KOG1007|consen 339 SS--ADPWIFASLSYDGRVIISSVPRF 363 (370)
T ss_pred cc--CCCeeEEEeccCceEEeecCChh
Confidence 94 34456788899999998877653
No 155
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.94 E-value=2.7e-25 Score=178.59 Aligned_cols=269 Identities=14% Similarity=0.170 Sum_probs=205.4
Q ss_pred EEEeCCCCcEEEEecccCceeeEeeec--CccEEEEEEeCCCCeEEEE--cCCCeEEEEECCCCC-cccccccccCCCcc
Q 017194 31 VASSGEDGCICWFDLRSKDVQLVTDVG--NGPVTSLCFKSGNEDIIYV--SSGKEVKSFDVHMPA-SWRPLESYNYNKEE 105 (375)
Q Consensus 31 l~s~~~d~~i~iw~~~~~~~~~~~~~~--~~~v~~l~~~~~~~~l~~~--~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~ 105 (375)
+|+++. .++|||....+..-.+..| ...+.++.|..... |+++ +.|..+++|.-.... ....+....+ ..
T Consensus 7 ~aS~gd--~~kl~D~s~~~~~~~~~~~t~~pg~~s~~w~~~n~-lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~g--d~ 81 (673)
T KOG4378|consen 7 VASTGD--KTKLSDFSDLETKSEYVHQTAEPGDFSFNWQRRNF-LVVASMAGDKVMRIKEKDGKTPEVPRVRKLTG--DN 81 (673)
T ss_pred eeccCC--ceEEeecccccCccccccCCCCCcceeeeccccce-EEEeecCCceeEEEecccCCCCccceeecccc--ch
Confidence 444443 6999999876654444433 33488999987654 5444 446788999754220 1122222222 24
Q ss_pred eeEEEEcCCCCeEEEEeCCCcEEEEeCcCceeeeeEecCcccceeEEEEeeCCCcEEEEeecCCeEEEeeCCCCCcceEE
Q 017194 106 INQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIV 185 (375)
Q Consensus 106 v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~ 185 (375)
-.|++......++++|+..+.|+|||++...+.+.++ +|+..|+++.++-.+. +|++++..|.|.+..+.++.....+
T Consensus 82 ~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~hr~lk-dh~stvt~v~YN~~De-yiAsvs~gGdiiih~~~t~~~tt~f 159 (673)
T KOG4378|consen 82 AFCVACASQSLYEISGGQSGCVKIWDLRAKLIHRFLK-DHQSTVTYVDYNNTDE-YIASVSDGGDIIIHGTKTKQKTTTF 159 (673)
T ss_pred HHHHhhhhcceeeeccCcCceeeehhhHHHHHhhhcc-CCcceeEEEEecCCcc-eeEEeccCCcEEEEecccCccccce
Confidence 4455555566899999999999999999777778888 9999999999998888 7999999999999999999888888
Q ss_pred ecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCcceeecccccCCCCCCceeecccccc
Q 017194 186 NFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIR 265 (375)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~ 265 (375)
..+ ....+.-+.++|. ...+|.+++.+|.|.+||.....
T Consensus 160 ~~~------------sgqsvRll~ys~s-----kr~lL~~asd~G~VtlwDv~g~s------------------------ 198 (673)
T KOG4378|consen 160 TID------------SGQSVRLLRYSPS-----KRFLLSIASDKGAVTLWDVQGMS------------------------ 198 (673)
T ss_pred ecC------------CCCeEEEeecccc-----cceeeEeeccCCeEEEEeccCCC------------------------
Confidence 755 3456778999984 45677888999999999998632
Q ss_pred eeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEecCCCeEEEEeCCCceeeeecchhhhhhhhccccc
Q 017194 266 DAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNK 345 (375)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 345 (375)
....-...|..+...++|+| .+..+|++.+.|..|.+||.... ..........
T Consensus 199 ---------------p~~~~~~~HsAP~~gicfsp--sne~l~vsVG~Dkki~~yD~~s~----------~s~~~l~y~~ 251 (673)
T KOG4378|consen 199 ---------------PIFHASEAHSAPCRGICFSP--SNEALLVSVGYDKKINIYDIRSQ----------ASTDRLTYSH 251 (673)
T ss_pred ---------------cccchhhhccCCcCcceecC--CccceEEEecccceEEEeecccc----------cccceeeecC
Confidence 22334567999999999996 56678999999999999999975 2334445677
Q ss_pred ceeeeeecCCCCCcEEEeeCCCeEEEEecC
Q 017194 346 KVNWLCTTPTESENLVVCDTSKVVKVYSIS 375 (375)
Q Consensus 346 ~v~~~~~~~~~~~~l~s~~~dg~v~iw~~~ 375 (375)
+...++|.+ +|-+|+.|...|.|..||+.
T Consensus 252 Plstvaf~~-~G~~L~aG~s~G~~i~YD~R 280 (673)
T KOG4378|consen 252 PLSTVAFSE-CGTYLCAGNSKGELIAYDMR 280 (673)
T ss_pred CcceeeecC-CceEEEeecCCceEEEEecc
Confidence 899999999 99999999999999999973
No 156
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=1.9e-24 Score=164.40 Aligned_cols=262 Identities=16% Similarity=0.219 Sum_probs=184.0
Q ss_pred eeEeeecCccEEEEEEeCCCCeEEEEcCCCeEEEEECCCCCc--ccccccccCCCcceeEEEEcCCCCeEEEEe-CCCcE
Q 017194 51 QLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPAS--WRPLESYNYNKEEINQIVCNPKSSFLACAD-DGGDV 127 (375)
Q Consensus 51 ~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i~iwd~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i 127 (375)
+..+++|...|++++|+.||++|++++.|+.|++|+++.-.. -+.+.. ...-+..+.+.|.||-+-+++.. ....+
T Consensus 79 ~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~-nve~dhpT~V~FapDc~s~vv~~~~g~~l 157 (420)
T KOG2096|consen 79 VSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQ-NVEYDHPTRVVFAPDCKSVVVSVKRGNKL 157 (420)
T ss_pred hhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhc-cccCCCceEEEECCCcceEEEEEccCCEE
Confidence 455678999999999999999999999999999999985211 111111 01123567899999987665554 45579
Q ss_pred EEEeCcCcee---ee--------eEecCcccceeEEEEeeCCCcEEEEeecCCeEEEeeCCCCCcceEEecCCCCCCCCC
Q 017194 128 KIIDIRQHCL---YK--------SLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNA 196 (375)
Q Consensus 128 ~iwd~~~~~~---~~--------~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~ 196 (375)
++|.+...+- .. .|...|.-.+..+-....+. ++++++.|..|.+|+++ |+.+..+...
T Consensus 158 ~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k-~imsas~dt~i~lw~lk-Gq~L~~idtn-------- 227 (420)
T KOG2096|consen 158 CVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAK-YIMSASLDTKICLWDLK-GQLLQSIDTN-------- 227 (420)
T ss_pred EEEEeeecccCCCCcccccccccccchhcccceEEEeecCCce-EEEEecCCCcEEEEecC-Cceeeeeccc--------
Confidence 9998753211 10 12214556667777777777 79999999999999999 8888888744
Q ss_pred CcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCcceeecccccCCCCCCceeecccccceeeeeeeecCC
Q 017194 197 GQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSG 276 (375)
Q Consensus 197 ~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~ 276 (375)
...-+..+++| +|+++++++..-.+++|.+-- ..||.
T Consensus 228 -----q~~n~~aavSP------~GRFia~~gFTpDVkVwE~~f--------------------~kdG~------------ 264 (420)
T KOG2096|consen 228 -----QSSNYDAAVSP------DGRFIAVSGFTPDVKVWEPIF--------------------TKDGT------------ 264 (420)
T ss_pred -----cccccceeeCC------CCcEEEEecCCCCceEEEEEe--------------------ccCcc------------
Confidence 34556778888 899999999988999998642 11221
Q ss_pred cceeEeeeeecCCCccEEEEEEeecCCCCcEEEEecCCCeEEEEeCCCceeeeecchhhhhhhhc----ccccceeeeee
Q 017194 277 GKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNI----NLNKKVNWLCT 352 (375)
Q Consensus 277 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~----~~~~~v~~~~~ 352 (375)
-.....+..+.+|...|..++|+ ++...+++.+.||+++|||++-....- ..+++++... .-.+....+..
T Consensus 265 fqev~rvf~LkGH~saV~~~aFs---n~S~r~vtvSkDG~wriwdtdVrY~~~--qDpk~Lk~g~~pl~aag~~p~RL~l 339 (420)
T KOG2096|consen 265 FQEVKRVFSLKGHQSAVLAAAFS---NSSTRAVTVSKDGKWRIWDTDVRYEAG--QDPKILKEGSAPLHAAGSEPVRLEL 339 (420)
T ss_pred hhhhhhhheeccchhheeeeeeC---CCcceeEEEecCCcEEEeeccceEecC--CCchHhhcCCcchhhcCCCceEEEe
Confidence 11234556899999999999999 999999999999999999987543210 1113333221 12233448899
Q ss_pred cCCCCCcEEEeeCCCeEEEEe
Q 017194 353 TPTESENLVVCDTSKVVKVYS 373 (375)
Q Consensus 353 ~~~~~~~l~s~~~dg~v~iw~ 373 (375)
+| +|+.|+.+.. ..++++.
T Consensus 340 sP-~g~~lA~s~g-s~l~~~~ 358 (420)
T KOG2096|consen 340 SP-SGDSLAVSFG-SDLKVFA 358 (420)
T ss_pred CC-CCcEEEeecC-CceEEEE
Confidence 99 8887776543 3455553
No 157
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=2e-25 Score=176.67 Aligned_cols=211 Identities=17% Similarity=0.206 Sum_probs=173.0
Q ss_pred eecCCCceeEEEEecCCCCEEEEeCCCCcEEEEecccCceeeEeeecCccEEEEEEeCC-CCeEEEEcCCCeEEEEECCC
Q 017194 11 LRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSG-NEDIIYVSSGKEVKSFDVHM 89 (375)
Q Consensus 11 l~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~-~~~l~~~~~d~~i~iwd~~~ 89 (375)
-++|++.|..++|+......||||+.|.+|++||+.++++..++..|...|.++.|+|. ...|++|+.|+++.+.|.+.
T Consensus 239 ~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~ 318 (463)
T KOG0270|consen 239 ASGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRD 318 (463)
T ss_pred cccchHHHHHHHhccccceeEEecCCCceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccC
Confidence 35799999999999887789999999999999999999999999999999999999985 56799999999999999985
Q ss_pred CCcccccccccCCCcceeEEEEcCCC-CeEEEEeCCCcEEEEeCcCc-eeeeeEecCcccceeEEEEeeCCCcEEEEeec
Q 017194 90 PASWRPLESYNYNKEEINQIVCNPKS-SFLACADDGGDVKIIDIRQH-CLYKSLRAGHSSICSSVQFIPWKPWEVISGGL 167 (375)
Q Consensus 90 ~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~ 167 (375)
.......-.+ .+.|-.++|.|.. ..++++..||+|+-+|++.. +++.+++ .|..+|.++++++..++++++++.
T Consensus 319 ~~~s~~~wk~---~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~-AHd~~ISgl~~n~~~p~~l~t~s~ 394 (463)
T KOG0270|consen 319 PSNSGKEWKF---DGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLK-AHDDEISGLSVNIQTPGLLSTAST 394 (463)
T ss_pred ccccCceEEe---ccceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEE-eccCCcceEEecCCCCcceeeccc
Confidence 3332222233 5789999999954 56788889999999999965 8899999 999999999999998889999999
Q ss_pred CCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCcc
Q 017194 168 DSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESEL 241 (375)
Q Consensus 168 d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~ 241 (375)
|+.|++|++....+....... +.-+...|.++.|. ..-+++.|+..+.+++||+.+..
T Consensus 395 d~~Vklw~~~~~~~~~v~~~~-----------~~~~rl~c~~~~~~-----~a~~la~GG~k~~~~vwd~~~~~ 452 (463)
T KOG0270|consen 395 DKVVKLWKFDVDSPKSVKEHS-----------FKLGRLHCFALDPD-----VAFTLAFGGEKAVLRVWDIFTNS 452 (463)
T ss_pred cceEEEEeecCCCCccccccc-----------ccccceeecccCCC-----cceEEEecCccceEEEeecccCh
Confidence 999999998755442221100 01134667777774 45678888888899999998753
No 158
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.94 E-value=6.5e-25 Score=181.35 Aligned_cols=258 Identities=16% Similarity=0.133 Sum_probs=185.9
Q ss_pred CeeeecCCCceeEEEEecCCCCEEEEeCCCCcEEEEecccCceeeE--eeecCccEEEEEEeCCC-CeEEEEcCCCeEEE
Q 017194 8 PRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLV--TDVGNGPVTSLCFKSGN-EDIIYVSSGKEVKS 84 (375)
Q Consensus 8 ~~~l~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~--~~~~~~~v~~l~~~~~~-~~l~~~~~d~~i~i 84 (375)
++....|...|..+.|-|- ...|++++.|.++++||+++.++... +.+|...|.+++|.|.. ..+++|+.||.|.|
T Consensus 93 lk~~~aH~nAifDl~wapg-e~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~ill 171 (720)
T KOG0321|consen 93 LKKPLAHKNAIFDLKWAPG-ESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILL 171 (720)
T ss_pred hcccccccceeEeeccCCC-ceeEEEccCCceeeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEE
Confidence 3556689999999999994 88999999999999999999988666 88999999999999865 46889999999999
Q ss_pred EECCCCCc--------------------c----cccccccCCCcceeE---EEEcCCCCeEEEEeC-CCcEEEEeCcCce
Q 017194 85 FDVHMPAS--------------------W----RPLESYNYNKEEINQ---IVCNPKSSFLACADD-GGDVKIIDIRQHC 136 (375)
Q Consensus 85 wd~~~~~~--------------------~----~~~~~~~~~~~~v~~---~~~~~~~~~l~~~~~-dg~i~iwd~~~~~ 136 (375)
||++-... . +.+.....+...|.+ +.+..|...||+++. |+.|+|||+++..
T Consensus 172 WD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~ 251 (720)
T KOG0321|consen 172 WDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNY 251 (720)
T ss_pred EEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccc
Confidence 99864220 0 011112233444555 556678888998887 9999999998653
Q ss_pred eeee--------EecCc---ccceeEEEEeeCCCcEEEEeecCCeEEEeeCCCCCc--ceEEecCCCCCCCCCCcccCCC
Q 017194 137 LYKS--------LRAGH---SSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRP--NKIVNFGLPENNGNAGQCYNPA 203 (375)
Q Consensus 137 ~~~~--------~~~~~---~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 203 (375)
.... +. .| ...+.++.....|.+++|+|. |+.|++|++.+-.. +..+. + .. ...
T Consensus 252 ~~~r~ep~~~~~~~-t~skrs~G~~nL~lDssGt~L~AsCt-D~sIy~ynm~s~s~sP~~~~s-g---------~~-~~s 318 (720)
T KOG0321|consen 252 TAYRQEPRGSDKYP-THSKRSVGQVNLILDSSGTYLFASCT-DNSIYFYNMRSLSISPVAEFS-G---------KL-NSS 318 (720)
T ss_pred cccccCCCcccCcc-CcccceeeeEEEEecCCCCeEEEEec-CCcEEEEeccccCcCchhhcc-C---------cc-cce
Confidence 3221 11 22 235677777777886566665 99999999986432 22221 1 00 011
Q ss_pred ceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCcceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEee
Q 017194 204 FVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLD 283 (375)
Q Consensus 204 ~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~ 283 (375)
.-..-..+| ++..+++|+.|...++|.+.+... ..
T Consensus 319 f~vks~lSp------d~~~l~SgSsd~~ayiw~vs~~e~---------------------------------------~~ 353 (720)
T KOG0321|consen 319 FYVKSELSP------DDCSLLSGSSDEQAYIWVVSSPEA---------------------------------------PP 353 (720)
T ss_pred eeeeeecCC------CCceEeccCCCcceeeeeecCccC---------------------------------------Ch
Confidence 111223344 899999999999999999987532 22
Q ss_pred eeecCCCccEEEEEEeecCCCCcEEEEecCCCeEEEEeCCCce
Q 017194 284 YSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQ 326 (375)
Q Consensus 284 ~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd~~~~~ 326 (375)
..+.+|...|++++|.| ..-.-++++++|..+++|++..+-
T Consensus 354 ~~l~Ght~eVt~V~w~p--S~~t~v~TcSdD~~~kiW~l~~~l 394 (720)
T KOG0321|consen 354 ALLLGHTREVTTVRWLP--SATTPVATCSDDFRVKIWRLSNGL 394 (720)
T ss_pred hhhhCcceEEEEEeecc--ccCCCceeeccCcceEEEeccCch
Confidence 36779999999999985 233457777999999999997663
No 159
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=4.2e-24 Score=162.21 Aligned_cols=250 Identities=14% Similarity=0.133 Sum_probs=180.1
Q ss_pred EEEEEEeCCCCeEEEEcCCCeEEEEECCCCCcccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCceeeee
Q 017194 61 VTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKS 140 (375)
Q Consensus 61 v~~l~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 140 (375)
-.++.|++.|.+||+|+.+|.|.|||+.|.. .-+.+.+|..+|++++|+++|+.|++++.|..|.+||+..+.+++.
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~---iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~r 102 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFR---IARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKR 102 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccc---hhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeE
Confidence 6899999999999999999999999999743 4556677899999999999999999999999999999999999999
Q ss_pred EecCcccceeEEEEeeCCCcEEEEeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCC
Q 017194 141 LRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTN 220 (375)
Q Consensus 141 ~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 220 (375)
++ ..++|+...|+|...+.+++.-.+..-.+-++.. +.+.+-...++... .....+..|.+ .|
T Consensus 103 ir--f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~--~~h~~Lp~d~d~dl-------n~sas~~~fdr------~g 165 (405)
T KOG1273|consen 103 IR--FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSD--PKHSVLPKDDDGDL-------NSSASHGVFDR------RG 165 (405)
T ss_pred EE--ccCccceeeeccccCCeEEEEEecCCcEEEEecC--CceeeccCCCcccc-------ccccccccccC------CC
Confidence 98 7899999999998775555554454455555543 22222111000000 01111223444 79
Q ss_pred CEEEEEecCCcEEEEeCCCcceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCC-ccEEEEEEe
Q 017194 221 KICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHT-AAASCVAFS 299 (375)
Q Consensus 221 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~s 299 (375)
+++++|...|.+.+||..+. +++..++-.. ..|..+.++
T Consensus 166 ~yIitGtsKGkllv~~a~t~----------------------------------------e~vas~rits~~~IK~I~~s 205 (405)
T KOG1273|consen 166 KYIITGTSKGKLLVYDAETL----------------------------------------ECVASFRITSVQAIKQIIVS 205 (405)
T ss_pred CEEEEecCcceEEEEecchh----------------------------------------eeeeeeeechheeeeEEEEe
Confidence 99999999999999999974 2333333323 678889999
Q ss_pred ecCCCCcEEEEecCCCeEEEEeCCCceeeeecchhhhhhhhcc--cccceeeeeecCCCCCcEEEee-CCCeEEEEec
Q 017194 300 MFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNIN--LNKKVNWLCTTPTESENLVVCD-TSKVVKVYSI 374 (375)
Q Consensus 300 ~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~l~s~~-~dg~v~iw~~ 374 (375)
..|++|+.-+.|+.|+.|+++.-.........+....+.. ..-.-.+++|+. +|.|++.++ ....++||.-
T Consensus 206 ---~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~-dgeYv~a~s~~aHaLYIWE~ 279 (405)
T KOG1273|consen 206 ---RKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSG-DGEYVCAGSARAHALYIWEK 279 (405)
T ss_pred ---ccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecC-CccEEEeccccceeEEEEec
Confidence 8999999999999999999884322111111122222222 223345678888 999998877 4468999963
No 160
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.94 E-value=8.9e-26 Score=172.06 Aligned_cols=264 Identities=16% Similarity=0.161 Sum_probs=196.0
Q ss_pred CCCceeEEEEecC---CCCEEEEeCCCCcEEEEecccCceeeEeeecCccEEEEEEeCCC-CeEEEEcCCCeEEEEECCC
Q 017194 14 HKATATCCIASRD---RPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGN-EDIIYVSSGKEVKSFDVHM 89 (375)
Q Consensus 14 h~~~i~~~~~~~~---~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~-~~l~~~~~d~~i~iwd~~~ 89 (375)
|++.-..++|+-+ +..++|.||.-|.|+|.|+.+++....+.+|...|+.+.+.|+. +++++++.|..|++|++++
T Consensus 88 ~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~ 167 (385)
T KOG1034|consen 88 HDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQT 167 (385)
T ss_pred CCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccC
Confidence 6777888899765 23578999999999999999999999999999999999999975 5788999999999999999
Q ss_pred CCcccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCceeee-------------------------eE--e
Q 017194 90 PASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYK-------------------------SL--R 142 (375)
Q Consensus 90 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~-------------------------~~--~ 142 (375)
..+...+....+|...|.++.|++++.+|++++.|.++++|++...+... .| .
T Consensus 168 ~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~ 247 (385)
T KOG1034|consen 168 DVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTT 247 (385)
T ss_pred CeEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCcccccccccccc
Confidence 99999999999999999999999999999999999999999997321100 00 0
Q ss_pred cCcccceeEEEEeeCCCcEEEEeecCCeEEEeeCC-CCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCC
Q 017194 143 AGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFS-KGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNK 221 (375)
Q Consensus 143 ~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 221 (375)
.-|...|.|+.|-.+ ++++-+.++.|..|..- -++.+..++.+.....-....-+....+.-+.|.- ++-++
T Consensus 248 diHrnyVDCvrw~gd---~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~----d~~~~ 320 (385)
T KOG1034|consen 248 DIHRNYVDCVRWFGD---FILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAF----DPWQK 320 (385)
T ss_pred ccccchHHHHHHHhh---heeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEee----cHHHH
Confidence 146777888887653 78999999999999872 22222212111000000000111223445554433 33689
Q ss_pred EEEEEecCCcEEEEeCCCcceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeec
Q 017194 222 ICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMF 301 (375)
Q Consensus 222 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~ 301 (375)
.||.|.+.|.|.+||++....... -++... .....|+..+|+
T Consensus 321 ~la~gnq~g~v~vwdL~~~ep~~~----------------------------------ttl~~s--~~~~tVRQ~sfS-- 362 (385)
T KOG1034|consen 321 MLALGNQSGKVYVWDLDNNEPPKC----------------------------------TTLTHS--KSGSTVRQTSFS-- 362 (385)
T ss_pred HHhhccCCCcEEEEECCCCCCccC----------------------------------ceEEec--cccceeeeeeec--
Confidence 999999999999999997432200 011111 124678999999
Q ss_pred CCCCcEEEEecCCCeEEEEeCC
Q 017194 302 GERGKYLISGGNDKLVKVWDCS 323 (375)
Q Consensus 302 ~~~~~~l~s~~~dg~i~iwd~~ 323 (375)
.||.+|+...+|++|.-||.-
T Consensus 363 -~dgs~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 363 -RDGSILVLVCDDGTVWRWDRV 383 (385)
T ss_pred -ccCcEEEEEeCCCcEEEEEee
Confidence 999999999999999999864
No 161
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.94 E-value=1.8e-24 Score=180.19 Aligned_cols=279 Identities=13% Similarity=0.127 Sum_probs=213.3
Q ss_pred ceeEEEEecCCCCEEEEeCCCCcEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEEcCCCeEEEEECCCCCccccc
Q 017194 17 TATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPL 96 (375)
Q Consensus 17 ~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~ 96 (375)
.|+.++|-|| |..|+.+.. ..+.+||.+.|..++++++|.+.|++++|+.+|+.+++|+.|+.|.+|+.+- +-+
T Consensus 14 ci~d~afkPD-GsqL~lAAg-~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~kl----EG~ 87 (1081)
T KOG1538|consen 14 CINDIAFKPD-GTQLILAAG-SRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKL----EGI 87 (1081)
T ss_pred chheeEECCC-CceEEEecC-CEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEecccc----cce
Confidence 8999999999 555554443 3699999999999999999999999999999999999999999999999763 222
Q ss_pred ccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCceeeeeEecCcccceeEEEEeeCCCcEEEEeecCCeEEEeeC
Q 017194 97 ESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDF 176 (375)
Q Consensus 97 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~ 176 (375)
-.+ .|...|.|+.|+|-.+.|++++- ...-+|..+.... ...+ ....+.+.+|..||. +++.|-.+|+|.+-+-
T Consensus 88 LkY-SH~D~IQCMsFNP~~h~LasCsL-sdFglWS~~qK~V-~K~k--ss~R~~~CsWtnDGq-ylalG~~nGTIsiRNk 161 (1081)
T KOG1538|consen 88 LKY-SHNDAIQCMSFNPITHQLASCSL-SDFGLWSPEQKSV-SKHK--SSSRIICCSWTNDGQ-YLALGMFNGTISIRNK 161 (1081)
T ss_pred eee-ccCCeeeEeecCchHHHhhhcch-hhccccChhhhhH-Hhhh--hheeEEEeeecCCCc-EEEEeccCceEEeecC
Confidence 222 36899999999999889998875 3577898765433 3333 356788999999999 7999999999999864
Q ss_pred CCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCcceeecccccCCCCCCc
Q 017194 177 SKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGS 256 (375)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~ 256 (375)
. +++...++-+ . ....+|.+++|+|..-. .....+++.....++.+|.+...
T Consensus 162 ~-gEek~~I~Rp--g--------g~Nspiwsi~~~p~sg~-G~~di~aV~DW~qTLSFy~LsG~---------------- 213 (1081)
T KOG1538|consen 162 N-GEEKVKIERP--G--------GSNSPIWSICWNPSSGE-GRNDILAVADWGQTLSFYQLSGK---------------- 213 (1081)
T ss_pred C-CCcceEEeCC--C--------CCCCCceEEEecCCCCC-CccceEEEEeccceeEEEEecce----------------
Confidence 3 5544444421 0 03478999999995221 12356788888888888877741
Q ss_pred eeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEecCCCeEEEEeCCCceeeeecchhhh
Q 017194 257 QSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDL 336 (375)
Q Consensus 257 ~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 336 (375)
.+..-+.-.-...++.+. ++|.|++.|+.|+.+.+|--+. -.
T Consensus 214 -------------------------~Igk~r~L~FdP~CisYf---~NGEy~LiGGsdk~L~~fTR~G----------vr 255 (1081)
T KOG1538|consen 214 -------------------------QIGKDRALNFDPCCISYF---TNGEYILLGGSDKQLSLFTRDG----------VR 255 (1081)
T ss_pred -------------------------eecccccCCCCchhheec---cCCcEEEEccCCCceEEEeecC----------eE
Confidence 111112223345677787 8999999999999999997665 34
Q ss_pred hhhhcccccceeeeeecCCCCCcEEEeeCCCeEEEEec
Q 017194 337 LIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSI 374 (375)
Q Consensus 337 ~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~iw~~ 374 (375)
+.+.......|+.++..| ++++++.|+.||+|..|++
T Consensus 256 LGTvg~~D~WIWtV~~~P-NsQ~v~~GCqDGTiACyNl 292 (1081)
T KOG1538|consen 256 LGTVGEQDSWIWTVQAKP-NSQYVVVGCQDGTIACYNL 292 (1081)
T ss_pred EeeccccceeEEEEEEcc-CCceEEEEEccCeeehhhh
Confidence 455566778999999999 9999999999999988875
No 162
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.93 E-value=1.2e-24 Score=161.18 Aligned_cols=302 Identities=13% Similarity=0.128 Sum_probs=208.2
Q ss_pred CCCeeeecCCCceeEEEEecCCCCEEEEeCCCCcEEEEecccCceeeEee-ecCccEEEEEEeCCCCeEEEEcCCCeEEE
Q 017194 6 AKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTD-VGNGPVTSLCFKSGNEDIIYVSSGKEVKS 84 (375)
Q Consensus 6 ~~~~~l~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~-~~~~~v~~l~~~~~~~~l~~~~~d~~i~i 84 (375)
.+...|++|.+.|+|+.|..+ .+|.+|..-|.|++|++++......++ .+...|+.+.-.|+ ..+.+-+.|..+.+
T Consensus 5 dP~fvLRp~~~~v~s~~fqa~--~rL~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~~L~l 81 (323)
T KOG0322|consen 5 DPFFVLRPHSSSVTSVLFQAN--ERLMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPN-DSLDTQGRDPLLIL 81 (323)
T ss_pred CCeeEeccccchheehhhccc--hhhhcccccceEEEEEeecCccchhhhhhccceeeceeecCC-cchhhcCCCceEEE
Confidence 456788899999999999876 469999999999999999998888888 57889999999887 46888999999999
Q ss_pred EECCCCCcccccccccCCCcceeEEEEcC-----CC----CeEEEEeCCC-cEEEEeCcCceeeeeEec---CcccceeE
Q 017194 85 FDVHMPASWRPLESYNYNKEEINQIVCNP-----KS----SFLACADDGG-DVKIIDIRQHCLYKSLRA---GHSSICSS 151 (375)
Q Consensus 85 wd~~~~~~~~~~~~~~~~~~~v~~~~~~~-----~~----~~l~~~~~dg-~i~iwd~~~~~~~~~~~~---~~~~~v~~ 151 (375)
|++.-+... .+ |.-.++++.|.+ ++ ..++.-++.. .+++-|......+..... +..+.+.+
T Consensus 82 w~ia~s~~i-~i-----~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc 155 (323)
T KOG0322|consen 82 WTIAYSAFI-SI-----HSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMC 155 (323)
T ss_pred EEccCcceE-EE-----eeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceee
Confidence 999853221 11 122344444443 11 1122211111 122222222222221110 23445666
Q ss_pred EEEee-CCC-cEEEEeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecC
Q 017194 152 VQFIP-WKP-WEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGD 229 (375)
Q Consensus 152 ~~~~~-~~~-~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~d 229 (375)
..+.. .+. .+++.|.++|.+.+||+.++..+..++...+. ......|..++.++.+.+ .-..=++|+.+
T Consensus 156 ~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv---~~~~ash~qpvlsldyas------~~~rGisgga~ 226 (323)
T KOG0322|consen 156 QDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKV---ESPNASHKQPVLSLDYAS------SCDRGISGGAD 226 (323)
T ss_pred eeccccccceEEEEEeccCCeEEEEEccCCceeecccccccc---ccchhhccCcceeeeech------hhcCCcCCCcc
Confidence 65432 222 35777889999999999988544433322110 122233677899999977 34555777888
Q ss_pred CcEEEEeCCCcceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEE
Q 017194 230 GVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLI 309 (375)
Q Consensus 230 g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~ 309 (375)
..+..|++..... .++...+..-....|..+.+- ||++.+|
T Consensus 227 dkl~~~Sl~~s~g------------------------------------slq~~~e~~lknpGv~gvrIR---pD~KIlA 267 (323)
T KOG0322|consen 227 DKLVMYSLNHSTG------------------------------------SLQIRKEITLKNPGVSGVRIR---PDGKILA 267 (323)
T ss_pred ccceeeeeccccC------------------------------------cccccceEEecCCCccceEEc---cCCcEEe
Confidence 8899998874211 111112222234568888888 9999999
Q ss_pred EecCCCeEEEEeCCCceeeeecchhhhhhhhcccccceeeeeecCCCCCcEEEeeCCCeEEEEec
Q 017194 310 SGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSI 374 (375)
Q Consensus 310 s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~iw~~ 374 (375)
|++.|+.|+||+.++. ..+..+.-|.+.|++++|+| +.+.+|+++.|++|-+|++
T Consensus 268 TAGWD~RiRVyswrtl---------~pLAVLkyHsagvn~vAfsp-d~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 268 TAGWDHRIRVYSWRTL---------NPLAVLKYHSAGVNAVAFSP-DCELMAAASKDARISLWKL 322 (323)
T ss_pred ecccCCcEEEEEeccC---------CchhhhhhhhcceeEEEeCC-CCchhhhccCCceEEeeec
Confidence 9999999999999999 77889999999999999999 8889999999999999987
No 163
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.93 E-value=8.8e-23 Score=153.39 Aligned_cols=302 Identities=13% Similarity=0.107 Sum_probs=212.8
Q ss_pred CCCCeeeecCCCceeEEEEe--cCCCCEEEEeCC----CCcEEEEecc--cCceeeEe-eecCccEEEEEEeCCCC----
Q 017194 5 EAKPRRLRGHKATATCCIAS--RDRPGFVASSGE----DGCICWFDLR--SKDVQLVT-DVGNGPVTSLCFKSGNE---- 71 (375)
Q Consensus 5 ~~~~~~l~~h~~~i~~~~~~--~~~~~~l~s~~~----d~~i~iw~~~--~~~~~~~~-~~~~~~v~~l~~~~~~~---- 71 (375)
++++..+..+ -+++++.|+ |+.+.+||.|+- .+.|.|-.+. +++.+..- ..|.-+++.+.|.|+..
T Consensus 35 ~~eiy~Y~ap-~~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~fd~~YP~tK~~wiPd~~g~~p 113 (364)
T KOG0290|consen 35 RKEIYTYNAP-WPLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDANFDHPYPVTKLMWIPDSKGVYP 113 (364)
T ss_pred cceEEEecCC-CceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccCCCCCCCCccceEecCCccccCc
Confidence 3444444443 357889998 444567888863 3566666554 34432222 24889999999999763
Q ss_pred -eEEEEcCCCeEEEEECCCCCc-cccccc-----ccCCCcceeEEEEcC-CCCeEEEEeCCCcEEEEeCcCce---eeee
Q 017194 72 -DIIYVSSGKEVKSFDVHMPAS-WRPLES-----YNYNKEEINQIVCNP-KSSFLACADDGGDVKIIDIRQHC---LYKS 140 (375)
Q Consensus 72 -~l~~~~~d~~i~iwd~~~~~~-~~~~~~-----~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~---~~~~ 140 (375)
+||+. +..+++|.+..... ...... -..+..+++++.|+. +-++|.+++-|-+..|||++++. ....
T Consensus 114 dlLATs--~D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQ 191 (364)
T KOG0290|consen 114 DLLATS--SDFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQ 191 (364)
T ss_pred chhhcc--cCeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeE
Confidence 34433 46899999874221 111111 123467899999988 66789999999999999999863 3556
Q ss_pred EecCcccceeEEEEeeCCCcEEEEeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCC
Q 017194 141 LRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTN 220 (375)
Q Consensus 141 ~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 220 (375)
+- .|..+|..++|...+..+|++.+.||.+++||++..+-...+.-. |. ...+...++|++. +-
T Consensus 192 LI-AHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~-p~---------~~~pLlRLswnkq-----Dp 255 (364)
T KOG0290|consen 192 LI-AHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYED-PS---------PSTPLLRLSWNKQ-----DP 255 (364)
T ss_pred EE-ecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecC-CC---------CCCcceeeccCcC-----Cc
Confidence 66 899999999999987779999999999999999987655544322 11 1346778888875 67
Q ss_pred CEEEEEecC-CcEEEEeCCCcceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEe
Q 017194 221 KICVVAKGD-GVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFS 299 (375)
Q Consensus 221 ~~l~~~~~d-g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 299 (375)
+++|+-..| ..|.+.|++.. ...+.++.+|.+.|+.++|.
T Consensus 256 nymATf~~dS~~V~iLDiR~P---------------------------------------~tpva~L~~H~a~VNgIaWa 296 (364)
T KOG0290|consen 256 NYMATFAMDSNKVVILDIRVP---------------------------------------CTPVARLRNHQASVNGIAWA 296 (364)
T ss_pred hHHhhhhcCCceEEEEEecCC---------------------------------------CcceehhhcCcccccceEec
Confidence 777766544 57999999964 24556899999999999999
Q ss_pred ecCCCCcEEEEecCCCeEEEEeCCCceeeeecchhhhhhhhcccccceeeeeecCCCCCcEEEeeCCCeEEE
Q 017194 300 MFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKV 371 (375)
Q Consensus 300 ~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~i 371 (375)
| .....|++++.|..+.+||+...... ....+++ .+. -.+.|+.+.|+|..+++|+.+.. +.+.+
T Consensus 297 P--hS~~hictaGDD~qaliWDl~q~~~~--~~~dPil-ay~-a~~EVNqi~Ws~~~~Dwiai~~~-kklei 361 (364)
T KOG0290|consen 297 P--HSSSHICTAGDDCQALIWDLQQMPRE--NGEDPIL-AYT-AGGEVNQIQWSSSQPDWIAICFG-KKLEI 361 (364)
T ss_pred C--CCCceeeecCCcceEEEEeccccccc--CCCCchh-hhh-ccceeeeeeecccCCCEEEEEec-CeeeE
Confidence 7 45679999999999999999876321 0000121 222 56789999999877888888764 34444
No 164
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=6.4e-24 Score=172.87 Aligned_cols=227 Identities=15% Similarity=0.198 Sum_probs=168.5
Q ss_pred CCeeeecCCCceeEEEEecCCCCEEEEeCCCCcEEEEecccCceeeEee-ecCccEEEEEEeC--CCCeEEEEcCCCeEE
Q 017194 7 KPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTD-VGNGPVTSLCFKS--GNEDIIYVSSGKEVK 83 (375)
Q Consensus 7 ~~~~l~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~-~~~~~v~~l~~~~--~~~~l~~~~~d~~i~ 83 (375)
..+.|+||++.|+|++|+.+ |.+|++|+.|-.+.|||.-..+.+..+. +|...|.++.|-| +.+.+++|+.|..|+
T Consensus 42 lE~eL~GH~GCVN~LeWn~d-G~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~ 120 (758)
T KOG1310|consen 42 LEAELTGHTGCVNCLEWNAD-GELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIK 120 (758)
T ss_pred hhhhhccccceecceeecCC-CCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEE
Confidence 45678999999999999999 9999999999999999998888777764 7999999999988 456789999999999
Q ss_pred EEECCCCC-------cccccccccCCCcceeEEEEcCCC-CeEEEEeCCCcEEEEeCcCcee----------eeeEecCc
Q 017194 84 SFDVHMPA-------SWRPLESYNYNKEEINQIVCNPKS-SFLACADDGGDVKIIDIRQHCL----------YKSLRAGH 145 (375)
Q Consensus 84 iwd~~~~~-------~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~----------~~~~~~~~ 145 (375)
++|+...+ .......+..|...|..++-.|++ +.+.++++||+|+-+|++.... +..+. ..
T Consensus 121 lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~-~~ 199 (758)
T KOG1310|consen 121 LFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYN-PQ 199 (758)
T ss_pred EEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhc-hh
Confidence 99998522 234455667788999999999988 7799999999999999985321 11111 22
Q ss_pred ccceeEEEEeeCCCcEEEEeecCCeEEEeeCCCCCc------------------ceEEecCCCCCCCCCC-cccCCCcee
Q 017194 146 SSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRP------------------NKIVNFGLPENNGNAG-QCYNPAFVH 206 (375)
Q Consensus 146 ~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~------------------~~~~~~~~~~~~~~~~-~~~~~~~v~ 206 (375)
.-...++..+|..+++|++|+.|-..++||.+...+ +..+..+. .....+ .......++
T Consensus 200 lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~h--lkn~~gn~~~~~~~~t 277 (758)
T KOG1310|consen 200 LIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGH--LKNSQGNLDRYITCCT 277 (758)
T ss_pred hheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCcc--ccCcccccccceeeeE
Confidence 346789999999998999999999999999543211 11111010 000000 000112357
Q ss_pred EEeecCCccccCCCCEEEEEecCCcEEEEeCCCccee
Q 017194 207 AIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNI 243 (375)
Q Consensus 207 ~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~ 243 (375)
.+.|+| +|..|++.-..-.|+++|+..++.+
T Consensus 278 ~vtfnp------NGtElLvs~~gEhVYlfdvn~~~~~ 308 (758)
T KOG1310|consen 278 YVTFNP------NGTELLVSWGGEHVYLFDVNEDKSP 308 (758)
T ss_pred EEEECC------CCcEEEEeeCCeEEEEEeecCCCCc
Confidence 788888 7887777766668999998765443
No 165
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=1.2e-23 Score=167.50 Aligned_cols=247 Identities=14% Similarity=0.170 Sum_probs=198.3
Q ss_pred CccEEEEEEeCCCCeEEEEcCCCeEEEEECCCCCcccccccccCCCcceeEEEEcCCCC-eEEEEeCCCcEEEEeCcCce
Q 017194 58 NGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSS-FLACADDGGDVKIIDIRQHC 136 (375)
Q Consensus 58 ~~~v~~l~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~ 136 (375)
.+.|+++.|+|....+++++.|+.+++|.+. ++....++.+.....+|.+.+|.|+|. .+++++....++.||+.+.+
T Consensus 213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvD-Gk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak 291 (514)
T KOG2055|consen 213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVD-GKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAK 291 (514)
T ss_pred cCCceEEEecCCCceEEEecCCCcEEEEEec-CccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeeccccc
Confidence 5789999999999999999999999999998 444456666665678999999999998 88999999999999998876
Q ss_pred ee--eeEecCcc-cceeEEEEeeCCCcEEEEeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCC
Q 017194 137 LY--KSLRAGHS-SICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDA 213 (375)
Q Consensus 137 ~~--~~~~~~~~-~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 213 (375)
.. ..+. ++. ..+.....+|+++ +++..+..|.|.+....+++.+..++.. +.+..++|+.
T Consensus 292 ~~k~~~~~-g~e~~~~e~FeVShd~~-fia~~G~~G~I~lLhakT~eli~s~Kie--------------G~v~~~~fsS- 354 (514)
T KOG2055|consen 292 VTKLKPPY-GVEEKSMERFEVSHDSN-FIAIAGNNGHIHLLHAKTKELITSFKIE--------------GVVSDFTFSS- 354 (514)
T ss_pred cccccCCC-CcccchhheeEecCCCC-eEEEcccCceEEeehhhhhhhhheeeec--------------cEEeeEEEec-
Confidence 53 3333 333 4567788899999 7999999999999999999999999865 8999999997
Q ss_pred ccccCCCCEEEEEecCCcEEEEeCCCcceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCC-Ccc
Q 017194 214 DMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGH-TAA 292 (375)
Q Consensus 214 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 292 (375)
+++.|++.+.+|.|.+||++... +++.+... .-.
T Consensus 355 -----dsk~l~~~~~~GeV~v~nl~~~~----------------------------------------~~~rf~D~G~v~ 389 (514)
T KOG2055|consen 355 -----DSKELLASGGTGEVYVWNLRQNS----------------------------------------CLHRFVDDGSVH 389 (514)
T ss_pred -----CCcEEEEEcCCceEEEEecCCcc----------------------------------------eEEEEeecCccc
Confidence 79999999999999999999742 22222221 112
Q ss_pred EEEEEEeecCCCCcEEEEecCCCeEEEEeCCCceeeeecchhhhhhhhcccccceeeeeecCCCCCcEEEee--CCCeEE
Q 017194 293 ASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCD--TSKVVK 370 (375)
Q Consensus 293 v~~~~~s~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~--~dg~v~ 370 (375)
=++++.| +++.|||+|+..|.|.|||.++... ...++++..+..-...|+++.|++ |++.||.+| .+..++
T Consensus 390 gts~~~S---~ng~ylA~GS~~GiVNIYd~~s~~~---s~~PkPik~~dNLtt~Itsl~Fn~-d~qiLAiaS~~~knalr 462 (514)
T KOG2055|consen 390 GTSLCIS---LNGSYLATGSDSGIVNIYDGNSCFA---STNPKPIKTVDNLTTAITSLQFNH-DAQILAIASRVKKNALR 462 (514)
T ss_pred eeeeeec---CCCceEEeccCcceEEEeccchhhc---cCCCCchhhhhhhheeeeeeeeCc-chhhhhhhhhccccceE
Confidence 3556777 8999999999999999999776422 122266677777888999999999 999998887 456677
Q ss_pred EEec
Q 017194 371 VYSI 374 (375)
Q Consensus 371 iw~~ 374 (375)
+-.+
T Consensus 463 LVHv 466 (514)
T KOG2055|consen 463 LVHV 466 (514)
T ss_pred EEec
Confidence 6544
No 166
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=3.5e-22 Score=146.51 Aligned_cols=283 Identities=15% Similarity=0.168 Sum_probs=196.2
Q ss_pred CceeEEEEecCCCCEEEEeCCCCcEEEEecccC---------c-eeeEeeecCccEEEEEEeCCCCeEEEEcCCCeEEEE
Q 017194 16 ATATCCIASRDRPGFVASSGEDGCICWFDLRSK---------D-VQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSF 85 (375)
Q Consensus 16 ~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~---------~-~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i~iw 85 (375)
..|.+-+++|. +++|+.|..+|.|.+..+.+. + .+...++|.++|+.++|. ..+|++++ ||.|+-|
T Consensus 11 ~tvf~qa~sp~-~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~g-dG~V~gw 86 (325)
T KOG0649|consen 11 NTVFAQAISPS-KQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGG-DGLVYGW 86 (325)
T ss_pred HHHHHHhhCCc-ceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee--hhheeecc-CceEEEe
Confidence 34666689998 899999999999999997631 1 244457899999999998 45677766 6999999
Q ss_pred ECCCCCc---ccccccc--cC-----CCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCceeeeeEecCcccceeEEEEe
Q 017194 86 DVHMPAS---WRPLESY--NY-----NKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFI 155 (375)
Q Consensus 86 d~~~~~~---~~~~~~~--~~-----~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~ 155 (375)
..+.... .+++-.. +. .-..|+++-..|..+-++.++.|+.++.||+++|+..+.++ +|++.+.++.--
T Consensus 87 ~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~r-GHtDYvH~vv~R 165 (325)
T KOG0649|consen 87 EWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYR-GHTDYVHSVVGR 165 (325)
T ss_pred eehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEc-CCcceeeeeeec
Confidence 8764221 0111000 11 12468899999988787777799999999999999999999 999999999885
Q ss_pred eCCCcEEEEeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEE
Q 017194 156 PWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVI 235 (375)
Q Consensus 156 ~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~ 235 (375)
.... .+++|++||++++||.++++.+..+.....+ .-.......+|.+++. +..+|++|+. ..+.+|
T Consensus 166 ~~~~-qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~---~~lRp~~g~wigala~--------~edWlvCGgG-p~lslw 232 (325)
T KOG0649|consen 166 NANG-QILSGAEDGTVRVWDTKTQKHVSMIEPYKNP---NLLRPDWGKWIGALAV--------NEDWLVCGGG-PKLSLW 232 (325)
T ss_pred ccCc-ceeecCCCccEEEEeccccceeEEeccccCh---hhcCcccCceeEEEec--------cCceEEecCC-CceeEE
Confidence 5444 5999999999999999999999888743100 0001112356777877 5778888765 479999
Q ss_pred eCCCcceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEecCCC
Q 017194 236 NIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDK 315 (375)
Q Consensus 236 d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~dg 315 (375)
.++..+ ..++..+. .++..+.|- ...++++++.+
T Consensus 233 hLrsse--------------------------------------~t~vfpip---a~v~~v~F~-----~d~vl~~G~g~ 266 (325)
T KOG0649|consen 233 HLRSSE--------------------------------------STCVFPIP---ARVHLVDFV-----DDCVLIGGEGN 266 (325)
T ss_pred eccCCC--------------------------------------ceEEEecc---cceeEeeee-----cceEEEecccc
Confidence 999642 23333444 446677775 34777888888
Q ss_pred eEEEEeCCCceeeeecchhhhhhhhcccccceeeeeecCCCCCcEEEeeCCCeEEEE
Q 017194 316 LVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVY 372 (375)
Q Consensus 316 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~iw 372 (375)
.|.-|.+..-- -......+...+...|+..--++|-.++....+.|+
T Consensus 267 ~v~~~~l~Gvl----------~a~ip~~s~~c~s~s~~~~p~k~~s~ag~s~~~~i~ 313 (325)
T KOG0649|consen 267 HVQSYTLNGVL----------QANIPVESTACYSASWQTSPIKFISIAGFSNKLHIL 313 (325)
T ss_pred ceeeeeeccEE----------EEeccCCccceeeecccCCceEEEEecccceeeeee
Confidence 89999887632 112222233344455543223455556666666654
No 167
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.92 E-value=9.5e-24 Score=167.87 Aligned_cols=264 Identities=16% Similarity=0.177 Sum_probs=193.1
Q ss_pred ecccCceeeEeeecCccEEEEEEeCCCC--eEEEEcCCCeEEEEECCC-CCcccccccccCCCcceeEEEEcCC-CCeEE
Q 017194 44 DLRSKDVQLVTDVGNGPVTSLCFKSGNE--DIIYVSSGKEVKSFDVHM-PASWRPLESYNYNKEEINQIVCNPK-SSFLA 119 (375)
Q Consensus 44 ~~~~~~~~~~~~~~~~~v~~l~~~~~~~--~l~~~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~ 119 (375)
|+..-.....+..+.++|++++|+|..+ .+++|...|+|-+||+.+ ++....+..+..|..+|.++.|+|. ...++
T Consensus 172 ~l~~~~~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ 251 (498)
T KOG4328|consen 172 DLDDYRILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIY 251 (498)
T ss_pred ccccceecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhhee
Confidence 3334444556677899999999999654 677777889999999953 3334556667789999999999995 46799
Q ss_pred EEeCCCcEEEEeCcCcee--eeeEecCcccceeEEEEeeCCCcEEEEeecCCeEEEeeCCCCCc-ceEEecCCCCCCCCC
Q 017194 120 CADDGGDVKIIDIRQHCL--YKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRP-NKIVNFGLPENNGNA 196 (375)
Q Consensus 120 ~~~~dg~i~iwd~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~-~~~~~~~~~~~~~~~ 196 (375)
+.+.||+|+.-|++.... +..+. .....+.++.|+.+.. .++.+..=|...+||++++.. ...+..
T Consensus 252 ssSyDGtiR~~D~~~~i~e~v~s~~-~d~~~fs~~d~~~e~~-~vl~~~~~G~f~~iD~R~~~s~~~~~~l--------- 320 (498)
T KOG4328|consen 252 SSSYDGTIRLQDFEGNISEEVLSLD-TDNIWFSSLDFSAESR-SVLFGDNVGNFNVIDLRTDGSEYENLRL--------- 320 (498)
T ss_pred eeccCceeeeeeecchhhHHHhhcC-ccceeeeeccccCCCc-cEEEeecccceEEEEeecCCccchhhhh---------
Confidence 999999999999987643 33333 3455777888988887 577777777999999998765 333333
Q ss_pred CcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCcceeecccccCCCCCCceeecccccceeeeeeeecCC
Q 017194 197 GQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSG 276 (375)
Q Consensus 197 ~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~ 276 (375)
|...|.+|+++|. ...+|++++.|++.+|||++......
T Consensus 321 ----h~kKI~sv~~NP~-----~p~~laT~s~D~T~kIWD~R~l~~K~-------------------------------- 359 (498)
T KOG4328|consen 321 ----HKKKITSVALNPV-----CPWFLATASLDQTAKIWDLRQLRGKA-------------------------------- 359 (498)
T ss_pred ----hhcccceeecCCC-----CchheeecccCcceeeeehhhhcCCC--------------------------------
Confidence 4568999999997 78899999999999999999632111
Q ss_pred cceeEeeeeecCCCccEEEEEEeecCCCCcEEEEecCCCeEEEEeCCCceeeeecchhhhhhhhccccc------ceeee
Q 017194 277 GKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNK------KVNWL 350 (375)
Q Consensus 277 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~------~v~~~ 350 (375)
..+.....|...|.+..|| |.+..|++.+.|..|+|||..-.... ........|.. .....
T Consensus 360 ----sp~lst~~HrrsV~sAyFS---Ps~gtl~TT~~D~~IRv~dss~~sa~------~~p~~~I~Hn~~t~RwlT~fKA 426 (498)
T KOG4328|consen 360 ----SPFLSTLPHRRSVNSAYFS---PSGGTLLTTCQDNEIRVFDSSCISAK------DEPLGTIPHNNRTGRWLTPFKA 426 (498)
T ss_pred ----CcceecccccceeeeeEEc---CCCCceEeeccCCceEEeeccccccc------CCccceeeccCcccccccchhh
Confidence 1122455789999999999 77777999999999999998511000 11112223322 13345
Q ss_pred eecCCCCCcEEEeeCCCeEEEEe
Q 017194 351 CTTPTESENLVVCDTSKVVKVYS 373 (375)
Q Consensus 351 ~~~~~~~~~l~s~~~dg~v~iw~ 373 (375)
+|.| +..++++|-.-..|-|+|
T Consensus 427 ~W~P-~~~li~vg~~~r~IDv~~ 448 (498)
T KOG4328|consen 427 AWDP-DYNLIVVGRYPRPIDVFD 448 (498)
T ss_pred eeCC-CccEEEEeccCcceeEEc
Confidence 7888 888888887777777765
No 168
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.92 E-value=2.3e-24 Score=189.60 Aligned_cols=249 Identities=17% Similarity=0.183 Sum_probs=197.0
Q ss_pred CceeEEEEecCCCC---EEEEeCCCCcEEEEecccC------ceeeEeeecCccEEEEEEeCCCC-eEEEEcCCCeEEEE
Q 017194 16 ATATCCIASRDRPG---FVASSGEDGCICWFDLRSK------DVQLVTDVGNGPVTSLCFKSGNE-DIIYVSSGKEVKSF 85 (375)
Q Consensus 16 ~~i~~~~~~~~~~~---~l~s~~~d~~i~iw~~~~~------~~~~~~~~~~~~v~~l~~~~~~~-~l~~~~~d~~i~iw 85 (375)
..-+.++|.+.+.. +||.|.+||.|.+||...- ..+.+...|++.|..+.|++... .|++|+.+|.|.||
T Consensus 65 ~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iW 144 (1049)
T KOG0307|consen 65 NRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIW 144 (1049)
T ss_pred ccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEe
Confidence 45688999887333 4999999999999998652 23666778999999999999765 89999999999999
Q ss_pred ECCCCCcccccccccCCCcceeEEEEcCC-CCeEEEEeCCCcEEEEeCcCceeeeeEecCccc--ceeEEEEeeCCCcEE
Q 017194 86 DVHMPASWRPLESYNYNKEEINQIVCNPK-SSFLACADDGGDVKIIDIRQHCLYKSLRAGHSS--ICSSVQFIPWKPWEV 162 (375)
Q Consensus 86 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~~l 162 (375)
|+...+...... -....+.|.+++|+.. .+.|++++.+|.+.|||++..+.+..+. .+.. .+..++|+|++...+
T Consensus 145 Dlnn~~tP~~~~-~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls-~~~~~~~~S~l~WhP~~aTql 222 (1049)
T KOG0307|consen 145 DLNKPETPFTPG-SQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLS-DTPGRMHCSVLAWHPDHATQL 222 (1049)
T ss_pred ccCCcCCCCCCC-CCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccc-cCCCccceeeeeeCCCCceee
Confidence 998643322222 1123678999999985 4568889999999999999888877776 4443 478999999987677
Q ss_pred EEeecCC---eEEEeeCCCC-CcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCC
Q 017194 163 ISGGLDS---KLVMWDFSKG-RPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIE 238 (375)
Q Consensus 163 ~~~~~d~---~i~~wd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~ 238 (375)
++++.|. .|.+||+|.. .+++.++ + |...|.++.|++. |..+|++++.|+.|.+|+..
T Consensus 223 ~~As~dd~~PviqlWDlR~assP~k~~~-~------------H~~GilslsWc~~-----D~~lllSsgkD~~ii~wN~~ 284 (1049)
T KOG0307|consen 223 LVASGDDSAPVIQLWDLRFASSPLKILE-G------------HQRGILSLSWCPQ-----DPRLLLSSGKDNRIICWNPN 284 (1049)
T ss_pred eeecCCCCCceeEeecccccCCchhhhc-c------------cccceeeeccCCC-----CchhhhcccCCCCeeEecCC
Confidence 7777654 6999999864 3444543 3 6789999999996 67999999999999999999
Q ss_pred CcceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEecCCCeEE
Q 017194 239 SELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVK 318 (375)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~dg~i~ 318 (375)
++ +.+.++......+..+.|+| .+-..+++++-||.|.
T Consensus 285 tg----------------------------------------Evl~~~p~~~nW~fdv~w~p--r~P~~~A~asfdgkI~ 322 (1049)
T KOG0307|consen 285 TG----------------------------------------EVLGELPAQGNWCFDVQWCP--RNPSVMAAASFDGKIS 322 (1049)
T ss_pred Cc----------------------------------------eEeeecCCCCcceeeeeecC--CCcchhhhheecccee
Confidence 86 44556666678999999995 3334888999999999
Q ss_pred EEeCCCce
Q 017194 319 VWDCSRFQ 326 (375)
Q Consensus 319 iwd~~~~~ 326 (375)
||.+....
T Consensus 323 I~sl~~~~ 330 (1049)
T KOG0307|consen 323 IYSLQGTD 330 (1049)
T ss_pred eeeeecCC
Confidence 99998764
No 169
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=1.4e-23 Score=168.35 Aligned_cols=314 Identities=16% Similarity=0.143 Sum_probs=234.9
Q ss_pred CCCeeeecCCCceeEEEEecCCCCEEEEeCCCCcEEEEecccCceeeEe-eecCccEEEEEEeCC--CCeEEEEcCCCeE
Q 017194 6 AKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVT-DVGNGPVTSLCFKSG--NEDIIYVSSGKEV 82 (375)
Q Consensus 6 ~~~~~l~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~-~~~~~~v~~l~~~~~--~~~l~~~~~d~~i 82 (375)
.....|..|.+.|+.+.|+.. |..|++|+.|..|.+||+.++.....+ .+|...|....|-|. .+.+++++.||.+
T Consensus 133 ~l~~kL~~H~GcVntV~FN~~-Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqv 211 (559)
T KOG1334|consen 133 RLQKKLNKHKGCVNTVHFNQR-GDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQV 211 (559)
T ss_pred hhhhcccCCCCccceeeeccc-CceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCce
Confidence 345678899999999999998 899999999999999999998876655 478888888888774 4579999999999
Q ss_pred EEEECCCCCcccccccccCCCcceeEEEEcCCCC-eEEEEeCCCcEEEEeCcCceeeeeEec--Cccc---ceeEEEEee
Q 017194 83 KSFDVHMPASWRPLESYNYNKEEINQIVCNPKSS-FLACADDGGDVKIIDIRQHCLYKSLRA--GHSS---ICSSVQFIP 156 (375)
Q Consensus 83 ~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~--~~~~---~v~~~~~~~ 156 (375)
++=.+.........+.+..|.++|..++.-|+.. .|.+++.|+.+.-+|++.+.....+.. .+.. ...+++..|
T Consensus 212 r~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P 291 (559)
T KOG1334|consen 212 RVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDP 291 (559)
T ss_pred eeeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCC
Confidence 9988765555555666777899999999999764 488999999999999987654333221 2333 567899999
Q ss_pred CCCcEEEEeecCCeEEEeeCCCCCcc------eEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCC
Q 017194 157 WKPWEVISGGLDSKLVMWDFSKGRPN------KIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDG 230 (375)
Q Consensus 157 ~~~~~l~~~~~d~~i~~wd~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg 230 (375)
...+.+++++.|..+++||.+.-... ..+... ...--.+..|++++++. ++.-|.++..|-
T Consensus 292 ~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~-------hl~~d~~v~ITgl~Ysh------~~sElLaSYnDe 358 (559)
T KOG1334|consen 292 RNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPH-------HLVEDDPVNITGLVYSH------DGSELLASYNDE 358 (559)
T ss_pred CCccccccCChhhhhhhhcccchhhccccchhhhcCCc-------cccccCcccceeEEecC------Cccceeeeeccc
Confidence 98888999999999999998753221 111111 00001356799999997 577777777787
Q ss_pred cEEEEeCCCcceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeee-eecCCCc--cEEEEEEeecCCCCcE
Q 017194 231 VVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDY-SVGGHTA--AASCVAFSMFGERGKY 307 (375)
Q Consensus 231 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~--~v~~~~~s~~~~~~~~ 307 (375)
.|+++.-..+.-.. . ...+|. .+.+. .+++|.. .|..+-|- +|...|
T Consensus 359 ~IYLF~~~~~~G~~--p---------~~~s~~-----------------~~~~k~vYKGHrN~~TVKgVNFf--GPrsEy 408 (559)
T KOG1334|consen 359 DIYLFNKSMGDGSE--P---------DPSSPR-----------------EQYVKRVYKGHRNSRTVKGVNFF--GPRSEY 408 (559)
T ss_pred ceEEeccccccCCC--C---------CCCcch-----------------hhccchhhcccccccccceeeec--cCccce
Confidence 89999443221000 0 000000 01122 3677744 47777664 388999
Q ss_pred EEEecCCCeEEEEeCCCceeeeecchhhhhhhhcccccceeeeeecCCCCCcEEEeeCCCeEEEEe
Q 017194 308 LISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYS 373 (375)
Q Consensus 308 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~iw~ 373 (375)
+++|+.-|.|.||+-.++ ++++...+-...|+|+.-+|.. -.||+++-|.-|+||.
T Consensus 409 VvSGSDCGhIFiW~K~t~---------eii~~MegDr~VVNCLEpHP~~-PvLAsSGid~DVKIWT 464 (559)
T KOG1334|consen 409 VVSGSDCGHIFIWDKKTG---------EIIRFMEGDRHVVNCLEPHPHL-PVLASSGIDHDVKIWT 464 (559)
T ss_pred EEecCccceEEEEecchh---------HHHHHhhcccceEeccCCCCCC-chhhccCCccceeeec
Confidence 999999999999999998 8888888877799999999944 5899999999999995
No 170
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.92 E-value=9.3e-23 Score=159.45 Aligned_cols=229 Identities=14% Similarity=0.125 Sum_probs=171.2
Q ss_pred eeecCCCceeEEEEecCCCCEEEEeCCCCcEEEEecccCc-------eeeEeeecCccEEEEEEeCCC-CeEEEEcCCCe
Q 017194 10 RLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKD-------VQLVTDVGNGPVTSLCFKSGN-EDIIYVSSGKE 81 (375)
Q Consensus 10 ~l~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~-------~~~~~~~~~~~v~~l~~~~~~-~~l~~~~~d~~ 81 (375)
.+.||+++|..++|+|-+...||||++|.+|.||++..+. ++..+.+|...|--++|+|.. +.|++++.|++
T Consensus 76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~ 155 (472)
T KOG0303|consen 76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNT 155 (472)
T ss_pred CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCce
Confidence 4679999999999999988999999999999999987543 477889999999999999964 56889999999
Q ss_pred EEEEECCCCCcccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCceeeeeEecCccc-ceeEEEEeeCCCc
Q 017194 82 VKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSS-ICSSVQFIPWKPW 160 (375)
Q Consensus 82 i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~ 160 (375)
|.+||+.+++....+. |...|.++.|+.+|.+|++.+.|..|+|||.++++.+..-. +|.+ .-....|..++.
T Consensus 156 v~iWnv~tgeali~l~----hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~-~heG~k~~Raifl~~g~- 229 (472)
T KOG0303|consen 156 VSIWNVGTGEALITLD----HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGV-AHEGAKPARAIFLASGK- 229 (472)
T ss_pred EEEEeccCCceeeecC----CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecc-cccCCCcceeEEeccCc-
Confidence 9999999986554443 79999999999999999999999999999999999988876 7765 334556778886
Q ss_pred EEEEee---cCCeEEEeeCCCCCcc-eEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEE-EEecCCcEEEE
Q 017194 161 EVISGG---LDSKLVMWDFSKGRPN-KIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICV-VAKGDGVVDVI 235 (375)
Q Consensus 161 ~l~~~~---~d~~i~~wd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~-~~~~dg~i~i~ 235 (375)
++-+|. ++.++-+||...-+.. ...++. ....|.---+ +++.++++ +|-.|+.|+-|
T Consensus 230 i~tTGfsr~seRq~aLwdp~nl~eP~~~~elD------------tSnGvl~PFy------D~dt~ivYl~GKGD~~IRYy 291 (472)
T KOG0303|consen 230 IFTTGFSRMSERQIALWDPNNLEEPIALQELD------------TSNGVLLPFY------DPDTSIVYLCGKGDSSIRYF 291 (472)
T ss_pred eeeeccccccccceeccCcccccCcceeEEec------------cCCceEEeee------cCCCCEEEEEecCCcceEEE
Confidence 455553 5778999998764432 222222 1233333333 33666655 55589999999
Q ss_pred eCCCcc--eeecccccCCCCCCceeeccc
Q 017194 236 NIESEL--NISRSKSTTKPLKGSQSTSKV 262 (375)
Q Consensus 236 d~~~~~--~~~~~~~~~~~~~~~~~~s~~ 262 (375)
.+.... ..+........+.+.+.+.|.
T Consensus 292 Eit~d~P~~hyln~f~S~epQRG~g~mPK 320 (472)
T KOG0303|consen 292 EITNEPPFVHYLNTFSSKEPQRGMGFMPK 320 (472)
T ss_pred EecCCCceeEEecccccCCcccccccccc
Confidence 998754 222222333344445544443
No 171
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.91 E-value=1.3e-23 Score=171.41 Aligned_cols=262 Identities=14% Similarity=0.139 Sum_probs=196.7
Q ss_pred CCeeeecCCCceeEEEEecCCCCEEEEeCCCCcEEEEeccc--------CceeeEeeecCccEEEEEEeCCCCeEEEEcC
Q 017194 7 KPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRS--------KDVQLVTDVGNGPVTSLCFKSGNEDIIYVSS 78 (375)
Q Consensus 7 ~~~~l~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~--------~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~ 78 (375)
...++..|.+.|+.++|.|. ...|++++.||+|++|+++. -+++.++.+|.++|.|+++.+++.++++|+.
T Consensus 286 ik~tl~s~~d~ir~l~~~~s-ep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~ 364 (577)
T KOG0642|consen 286 IKFTLRSHDDCIRALAFHPS-EPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGI 364 (577)
T ss_pred eeeeeecchhhhhhhhcCCC-CCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeecc
Confidence 34478889999999999998 78999999999999999943 2357889999999999999999999999999
Q ss_pred CCeEEEEECCCC-------CcccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCceeeeeEec-Cccccee
Q 017194 79 GKEVKSFDVHMP-------ASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRA-GHSSICS 150 (375)
Q Consensus 79 d~~i~iwd~~~~-------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~~v~ 150 (375)
||+|+.|++... ........+.+|...|+.+++++....|++++.||+++.|+...... .+|.. ...+...
T Consensus 365 Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~Pl 443 (577)
T KOG0642|consen 365 DGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYPL 443 (577)
T ss_pred CceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCc-cccCCccccCCcc
Confidence 999999976521 11233456778999999999999999999999999999999876555 33331 1223445
Q ss_pred EEEEeeCCCcEEEEeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCC
Q 017194 151 SVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDG 230 (375)
Q Consensus 151 ~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg 230 (375)
++.+-.....+.++...-+.-.++++.....+..+.... .........+..+..+| +..+.+++..|+
T Consensus 444 svd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~------~~~~~~~~~in~vVs~~------~~~~~~~~hed~ 511 (577)
T KOG0642|consen 444 SVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSA------SPGPRRYPQINKVVSHP------TADITFTAHEDR 511 (577)
T ss_pred eEeeccchhHhhhhhcccccccchhhhhhhheeeccccC------CCcccccCccceEEecC------CCCeeEecccCC
Confidence 666654432223333333333344444444444433220 01111224567778888 689999999999
Q ss_pred cEEEEeCCCcceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEE
Q 017194 231 VVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLIS 310 (375)
Q Consensus 231 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s 310 (375)
.|+++|..++ .++.....|...++++++. |+|.+|++
T Consensus 512 ~Ir~~dn~~~----------------------------------------~~l~s~~a~~~svtslai~---~ng~~l~s 548 (577)
T KOG0642|consen 512 SIRFFDNKTG----------------------------------------KILHSMVAHKDSVTSLAID---PNGPYLMS 548 (577)
T ss_pred ceeccccccc----------------------------------------ccchheeeccceecceeec---CCCceEEe
Confidence 9999999875 5566788899999999999 99999999
Q ss_pred ecCCCeEEEEeCCCc
Q 017194 311 GGNDKLVKVWDCSRF 325 (375)
Q Consensus 311 ~~~dg~i~iwd~~~~ 325 (375)
++.||.+++|.+...
T Consensus 549 ~s~d~sv~l~kld~k 563 (577)
T KOG0642|consen 549 GSHDGSVRLWKLDVK 563 (577)
T ss_pred ecCCceeehhhccch
Confidence 999999999999876
No 172
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.91 E-value=6.9e-21 Score=166.53 Aligned_cols=292 Identities=23% Similarity=0.354 Sum_probs=224.5
Q ss_pred eeecCCCceeEEEEecCCCCEEEEeCCCCcEEEEecccCc-eeeEeeecC-ccEEEEEE-eCCCC-eEEEEcC-CCeEEE
Q 017194 10 RLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKD-VQLVTDVGN-GPVTSLCF-KSGNE-DIIYVSS-GKEVKS 84 (375)
Q Consensus 10 ~l~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~-~~~~~~~~~-~~v~~l~~-~~~~~-~l~~~~~-d~~i~i 84 (375)
.+..|...+.++.+.+. +..++.++.|+.+.+|+...+. ....+..+. ..+..+.+ .+++. .++..+. |+.+.+
T Consensus 60 ~~~~~~~~i~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 138 (466)
T COG2319 60 LLRGHEDSITSIAFSPD-GELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKL 138 (466)
T ss_pred eeeeccceEEEEEECCC-CcEEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEE
Confidence 46689999999999998 8889999999999999998886 666666644 37777777 78777 4554444 899999
Q ss_pred EECCCCCcccccccccCCCcceeEEEEcCCCCeEEEEeC-CCcEEEEeCcCceeeeeEecCcccceeEEEEeeCCCcEEE
Q 017194 85 FDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADD-GGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVI 163 (375)
Q Consensus 85 wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~ 163 (375)
|+... .......+..|...|..+.|+|++..+++++. ++.+++|++..+..+..+. +|...+.+++|+|++..+++
T Consensus 139 ~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~ 215 (466)
T COG2319 139 WDLST--PGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLA-GHTDPVSSLAFSPDGGLLIA 215 (466)
T ss_pred EEecC--CCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeec-cCCCceEEEEEcCCcceEEE
Confidence 99985 12445556667889999999999998888885 9999999999888888888 89999999999999873455
Q ss_pred EeecCCeEEEeeCCCCCcce-EEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCcce
Q 017194 164 SGGLDSKLVMWDFSKGRPNK-IVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELN 242 (375)
Q Consensus 164 ~~~~d~~i~~wd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~ 242 (375)
+++.|+.+++||...+.... .+.. +.... ...|+| ++..+++++.|+.+++|++.....
T Consensus 216 ~~~~d~~i~~wd~~~~~~~~~~~~~-------------~~~~~-~~~~~~------~~~~~~~~~~d~~~~~~~~~~~~~ 275 (466)
T COG2319 216 SGSSDGTIRLWDLSTGKLLRSTLSG-------------HSDSV-VSSFSP------DGSLLASGSSDGTIRLWDLRSSSS 275 (466)
T ss_pred EecCCCcEEEEECCCCcEEeeecCC-------------CCcce-eEeECC------CCCEEEEecCCCcEEEeeecCCCc
Confidence 55999999999988666665 3332 22332 227877 678888999999999999996421
Q ss_pred eecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEecCCCeEEEEeC
Q 017194 243 ISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDC 322 (375)
Q Consensus 243 ~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd~ 322 (375)
....+.+|...+.++.|. |++..+++++.|+.+.+|+.
T Consensus 276 ---------------------------------------~~~~~~~~~~~v~~~~~~---~~~~~~~~~~~d~~~~~~~~ 313 (466)
T COG2319 276 ---------------------------------------LLRTLSGHSSSVLSVAFS---PDGKLLASGSSDGTVRLWDL 313 (466)
T ss_pred ---------------------------------------EEEEEecCCccEEEEEEC---CCCCEEEEeeCCCcEEEEEc
Confidence 111226778899999999 78888888998999999988
Q ss_pred CCceeeeecchhhhhhhhcccccceeeeeecCCCCCcEEEe-eCCCeEEEEecC
Q 017194 323 SRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVC-DTSKVVKVYSIS 375 (375)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~-~~dg~v~iw~~~ 375 (375)
......... ....|...+..+.+ +.++..++.+ ..|+.+.+|++.
T Consensus 314 ~~~~~~~~~-------~~~~~~~~~~~~~~-~~~~~~~~~~~~~d~~~~~~~~~ 359 (466)
T COG2319 314 ETGKLLSSL-------TLKGHEGPVSSLSF-SPDGSLLVSGGSDDGTIRLWDLR 359 (466)
T ss_pred CCCceEEEe-------eecccCCceEEEEE-CCCCCEEEEeecCCCcEEeeecC
Confidence 887432111 02467778899999 5343556665 688999999863
No 173
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=1.1e-22 Score=159.19 Aligned_cols=313 Identities=13% Similarity=0.070 Sum_probs=219.3
Q ss_pred CeeeecCCCceeEEEEecCCCCEEEEeCCCCcEEEEeccc------CceeeEee-ecCccEEEEEEeCCCCeEEEEcCCC
Q 017194 8 PRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRS------KDVQLVTD-VGNGPVTSLCFKSGNEDIIYVSSGK 80 (375)
Q Consensus 8 ~~~l~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~------~~~~~~~~-~~~~~v~~l~~~~~~~~l~~~~~d~ 80 (375)
.+-+.+|.+.|+++.|+.+ +++||+|+.|..+++|+++. .+++.... .|...|.|++|......+++|..++
T Consensus 49 qKD~~~H~GCiNAlqFS~N-~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~ 127 (609)
T KOG4227|consen 49 QKDVREHTGCINALQFSHN-DRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWG 127 (609)
T ss_pred hhhhhhhccccceeeeccC-CeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcc
Confidence 3457789999999999998 89999999999999999863 24444443 3568999999999999999999999
Q ss_pred eEEEEECCCCCcccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCce-eeeeE-ecCcccceeEEEEeeCC
Q 017194 81 EVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHC-LYKSL-RAGHSSICSSVQFIPWK 158 (375)
Q Consensus 81 ~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~-~~~~~~~v~~~~~~~~~ 158 (375)
+|...|+++.+.+..... ....+.|..+..+|..+.+++.+.++.|.+||.+... ....+ ..........+.|+|..
T Consensus 128 ~VI~HDiEt~qsi~V~~~-~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~ 206 (609)
T KOG4227|consen 128 TVIKHDIETKQSIYVANE-NNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPET 206 (609)
T ss_pred eeEeeecccceeeeeecc-cCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCC
Confidence 999999997655443332 2235689999999999999999999999999998654 22222 11344567788999999
Q ss_pred CcEEEEeecCCeEEEeeCCCCCc-ceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeC
Q 017194 159 PWEVISGGLDSKLVMWDFSKGRP-NKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINI 237 (375)
Q Consensus 159 ~~~l~~~~~d~~i~~wd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~ 237 (375)
+.+|++.+..+-+-+||.+..+. +...... .........-.++.|+| +|..+++--....-.+||+
T Consensus 207 P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~-------~~L~~~~~~~M~~~~~~------~G~Q~msiRR~~~P~~~D~ 273 (609)
T KOG4227|consen 207 PALILVNSETGGPNVFDRRMQARPVYQRSMF-------KGLPQENTEWMGSLWSP------SGNQFMSIRRGKCPLYFDF 273 (609)
T ss_pred ceeEEeccccCCCCceeeccccchHHhhhcc-------ccCcccchhhhheeeCC------CCCeehhhhccCCCEEeee
Confidence 88899999999999999986542 1111100 00000011225677887 6887777665556667777
Q ss_pred CCcceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEecCCCeE
Q 017194 238 ESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLV 317 (375)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~dg~i 317 (375)
.+.+.......+. |+| ......+.+++|. +..-+++|+.+-.|
T Consensus 274 ~S~R~~V~k~D~N----------~~G-----------------------Y~N~~T~KS~~F~----~D~~v~tGSD~~~i 316 (609)
T KOG4227|consen 274 ISQRCFVLKSDHN----------PNG-----------------------YCNIKTIKSMTFI----DDYTVATGSDHWGI 316 (609)
T ss_pred ecccceeEeccCC----------CCc-----------------------ceeeeeeeeeeee----cceeeeccCcccce
Confidence 6532221110000 000 0012346677775 55669999999999
Q ss_pred EEEeCCCceeeee--------------cchhhhhhhhcccccceeeeeecCCCCCcEEEeeCCCeEEEEe
Q 017194 318 KVWDCSRFQGVQT--------------SINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYS 373 (375)
Q Consensus 318 ~iwd~~~~~~~~~--------------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~iw~ 373 (375)
++|.+.......- ......+..+.+|...++.+.|+| ...+|++.+..+.+++|.
T Consensus 317 ~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQVRF~~-H~~~l~SSGVE~~~KlWS 385 (609)
T KOG4227|consen 317 HIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQVRFSQ-HNNLLVSSGVENSFKLWS 385 (609)
T ss_pred EEEecCCCccccCccccCcchhhCchhheecceeEEEecccccccceeecC-CcceEeccchhhheeccc
Confidence 9999875432210 011233456789999999999999 667888899999999995
No 174
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.91 E-value=4.2e-21 Score=160.57 Aligned_cols=279 Identities=13% Similarity=0.102 Sum_probs=180.3
Q ss_pred EEEeCCCCcEEEEeccc-Cc--eeeEeeecCccEEEEEEeCCCCeEEEEc-CCCeEEEEECCCCCcccccccccCCCcce
Q 017194 31 VASSGEDGCICWFDLRS-KD--VQLVTDVGNGPVTSLCFKSGNEDIIYVS-SGKEVKSFDVHMPASWRPLESYNYNKEEI 106 (375)
Q Consensus 31 l~s~~~d~~i~iw~~~~-~~--~~~~~~~~~~~v~~l~~~~~~~~l~~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~v 106 (375)
+++...++.|.+|++.+ ++ .+..+. +......++++|++++|++++ .++.|.+|++.....+....... .....
T Consensus 5 y~~~~~~~~I~~~~~~~~g~l~~~~~~~-~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~-~~~~p 82 (330)
T PRK11028 5 YIASPESQQIHVWNLNHEGALTLLQVVD-VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESP-LPGSP 82 (330)
T ss_pred EEEcCCCCCEEEEEECCCCceeeeeEEe-cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeec-CCCCc
Confidence 44456789999999964 33 344444 345677899999999887764 47899999997322222222222 12356
Q ss_pred eEEEEcCCCCeEEEEe-CCCcEEEEeCcC-ce---eeeeEecCcccceeEEEEeeCCCcEEEEeecCCeEEEeeCCCCCc
Q 017194 107 NQIVCNPKSSFLACAD-DGGDVKIIDIRQ-HC---LYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRP 181 (375)
Q Consensus 107 ~~~~~~~~~~~l~~~~-~dg~i~iwd~~~-~~---~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~ 181 (375)
..++++|+++++++++ .++.|.+|++.+ +. .+..+. +......++++|++++++++...++.|.+||+++...
T Consensus 83 ~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~--~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~ 160 (330)
T PRK11028 83 THISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIE--GLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGH 160 (330)
T ss_pred eEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeecc--CCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCc
Confidence 7899999999988876 478999999964 22 222232 2345677889999985556677789999999986432
Q ss_pred ceE-----EecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEec-CCcEEEEeCCCcceeecccccCCCCCC
Q 017194 182 NKI-----VNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKG-DGVVDVINIESELNISRSKSTTKPLKG 255 (375)
Q Consensus 182 ~~~-----~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~~ 255 (375)
+.. .... .......++|+| +++++++++. ++.|.+|++........
T Consensus 161 l~~~~~~~~~~~------------~g~~p~~~~~~p------dg~~lyv~~~~~~~v~v~~~~~~~~~~~---------- 212 (330)
T PRK11028 161 LVAQEPAEVTTV------------EGAGPRHMVFHP------NQQYAYCVNELNSSVDVWQLKDPHGEIE---------- 212 (330)
T ss_pred ccccCCCceecC------------CCCCCceEEECC------CCCEEEEEecCCCEEEEEEEeCCCCCEE----------
Confidence 211 1111 123456789999 8999988876 89999999974210000
Q ss_pred ceeecccccceeeeeeeecCCcceeEeeeeec---CCCccEEEEEEeecCCCCcEEEEecC-CCeEEEEeCCCceeeeec
Q 017194 256 SQSTSKVNIRDAEMEILDQSGGKRLHLDYSVG---GHTAAASCVAFSMFGERGKYLISGGN-DKLVKVWDCSRFQGVQTS 331 (375)
Q Consensus 256 ~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~v~~~~~s~~~~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~ 331 (375)
..+.+..+. .+......+.++ |++++|+++.. ++.|.+|++.......
T Consensus 213 -----------------------~~~~~~~~p~~~~~~~~~~~i~~~---pdg~~lyv~~~~~~~I~v~~i~~~~~~~-- 264 (330)
T PRK11028 213 -----------------------CVQTLDMMPADFSDTRWAADIHIT---PDGRHLYACDRTASLISVFSVSEDGSVL-- 264 (330)
T ss_pred -----------------------EEEEEecCCCcCCCCccceeEEEC---CCCCEEEEecCCCCeEEEEEEeCCCCeE--
Confidence 000010111 011233468889 99999998854 7899999996542100
Q ss_pred chhhhhhhhcccccceeeeeecCCCCCcEEEeeC-CCeEEEEec
Q 017194 332 INNDLLIKNINLNKKVNWLCTTPTESENLVVCDT-SKVVKVYSI 374 (375)
Q Consensus 332 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~-dg~v~iw~~ 374 (375)
+++..... ......+.++| +|++|+++.. +++|.+|++
T Consensus 265 ---~~~~~~~~-~~~p~~~~~~~-dg~~l~va~~~~~~v~v~~~ 303 (330)
T PRK11028 265 ---SFEGHQPT-ETQPRGFNIDH-SGKYLIAAGQKSHHISVYEI 303 (330)
T ss_pred ---EEeEEEec-cccCCceEECC-CCCEEEEEEccCCcEEEEEE
Confidence 11111111 12455789999 9999988774 899999976
No 175
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.91 E-value=2.3e-22 Score=165.32 Aligned_cols=243 Identities=16% Similarity=0.129 Sum_probs=188.9
Q ss_pred eeEeeecCccEEEEEEeCCCCeEEEEcCCCeEEEEECCCCCcccccccccCCCcceeEEEEcCCCCe--EEEEeCCCcEE
Q 017194 51 QLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSF--LACADDGGDVK 128 (375)
Q Consensus 51 ~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~--l~~~~~dg~i~ 128 (375)
-..+.+|++.|.+|...|.|..|++|+.||+++||.+.+++++..+.. .+.|.+++|+|.+.. ||++-. ..+.
T Consensus 393 ~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~----d~~I~~vaw~P~~~~~vLAvA~~-~~~~ 467 (733)
T KOG0650|consen 393 ALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQF----DSEIRSVAWNPLSDLCVLAVAVG-ECVL 467 (733)
T ss_pred eeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEee----cceeEEEEecCCCCceeEEEEec-CceE
Confidence 445678999999999999999999999999999999999988777665 578999999997643 444433 3344
Q ss_pred EEeCcCc------------------------------------e--eeeeEecCcccceeEEEEeeCCCcEEEEeec---
Q 017194 129 IIDIRQH------------------------------------C--LYKSLRAGHSSICSSVQFIPWKPWEVISGGL--- 167 (375)
Q Consensus 129 iwd~~~~------------------------------------~--~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~--- 167 (375)
+.+..-| + ....+ .|...|+.+.|+..|. +|++...
T Consensus 468 ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I--~~~k~i~~vtWHrkGD-YlatV~~~~~ 544 (733)
T KOG0650|consen 468 IVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVI--KHPKSIRQVTWHRKGD-YLATVMPDSG 544 (733)
T ss_pred EeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEE--ecCCccceeeeecCCc-eEEEeccCCC
Confidence 4432211 0 01122 4778999999999999 5776654
Q ss_pred CCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCcceeeccc
Q 017194 168 DSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSK 247 (375)
Q Consensus 168 d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 247 (375)
...|.|+++...+...-+.. ..+.+.++.|+| ...+|++++.. .|++||+...
T Consensus 545 ~~~VliHQLSK~~sQ~PF~k-------------skG~vq~v~FHP------s~p~lfVaTq~-~vRiYdL~kq------- 597 (733)
T KOG0650|consen 545 NKSVLIHQLSKRKSQSPFRK-------------SKGLVQRVKFHP------SKPYLFVATQR-SVRIYDLSKQ------- 597 (733)
T ss_pred cceEEEEecccccccCchhh-------------cCCceeEEEecC------CCceEEEEecc-ceEEEehhHH-------
Confidence 34788999886654444432 247899999999 57788887764 8999999863
Q ss_pred ccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEecCCCeEEEEeCCCcee
Q 017194 248 STTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQG 327 (375)
Q Consensus 248 ~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd~~~~~~ 327 (375)
.++..+......|..++++ |.|.-|+.|+.|+.+..+|+.-..
T Consensus 598 ---------------------------------elvKkL~tg~kwiS~msih---p~GDnli~gs~d~k~~WfDldlss- 640 (733)
T KOG0650|consen 598 ---------------------------------ELVKKLLTGSKWISSMSIH---PNGDNLILGSYDKKMCWFDLDLSS- 640 (733)
T ss_pred ---------------------------------HHHHHHhcCCeeeeeeeec---CCCCeEEEecCCCeeEEEEcccCc-
Confidence 2333444456789999999 999999999999999999998765
Q ss_pred eeecchhhhhhhhcccccceeeeeecCCCCCcEEEeeCCCeEEEEe
Q 017194 328 VQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYS 373 (375)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~iw~ 373 (375)
+..+.+..|...++.++|++ .-.++++|+.||.+.|+.
T Consensus 641 -------kPyk~lr~H~~avr~Va~H~-ryPLfas~sdDgtv~Vfh 678 (733)
T KOG0650|consen 641 -------KPYKTLRLHEKAVRSVAFHK-RYPLFASGSDDGTVIVFH 678 (733)
T ss_pred -------chhHHhhhhhhhhhhhhhcc-ccceeeeecCCCcEEEEe
Confidence 77889999999999999998 667899999999999874
No 176
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.91 E-value=1.2e-24 Score=185.20 Aligned_cols=286 Identities=17% Similarity=0.233 Sum_probs=218.0
Q ss_pred cCCCCCeeeecCCCceeEEEEecCCCCEEEEeCCCCcEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEEcCCCeE
Q 017194 3 DAEAKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEV 82 (375)
Q Consensus 3 ~~~~~~~~l~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i 82 (375)
..++.++.|.||...|+|+.|... |.++++|+.|..++||..+++.++....+|.+.|+.++.+.+..++++++.|..|
T Consensus 178 qkmk~ikrLlgH~naVyca~fDrt-g~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vI 256 (1113)
T KOG0644|consen 178 QKMKNIKRLLGHRNAVYCAIFDRT-GRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVI 256 (1113)
T ss_pred HHHHHHHHHHhhhhheeeeeeccc-cceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceE
Confidence 345667788999999999999998 8999999999999999999999999999999999999999999999999999999
Q ss_pred EEEECCCCCcccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCceee---eeEecCcccceeEEEEeeCCC
Q 017194 83 KSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLY---KSLRAGHSSICSSVQFIPWKP 159 (375)
Q Consensus 83 ~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~---~~~~~~~~~~v~~~~~~~~~~ 159 (375)
++|.+.++ .++..+.+|++.|++++|+|-. +.+.||++++||.+-.-.+ +.++.....-+.++.|...+.
T Consensus 257 rvWrl~~~---~pvsvLrghtgavtaiafsP~~----sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~ 329 (1113)
T KOG0644|consen 257 RVWRLPDG---APVSVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGD 329 (1113)
T ss_pred EEEecCCC---chHHHHhccccceeeeccCccc----cCCCCCceEeccccccccccCCCCCCcccccceeeeecccccc
Confidence 99999864 6677778899999999999964 6779999999998711111 111101234567777888877
Q ss_pred cEEEEeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCC
Q 017194 160 WEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIES 239 (375)
Q Consensus 160 ~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 239 (375)
.+++++.|+.-..|.+..-... ...+.-+..+.+ ...+.+++-.+-.+.+|++.+
T Consensus 330 -~f~Tgs~d~ea~n~e~~~l~~~-------------------~~~lif~t~ssd-----~~~~~~~ar~~~~~~vwnl~~ 384 (1113)
T KOG0644|consen 330 -RFLTGSRDGEARNHEFEQLAWR-------------------SNLLIFVTRSSD-----LSSIVVTARNDHRLCVWNLYT 384 (1113)
T ss_pred -ccccccCCcccccchhhHhhhh-------------------ccceEEEecccc-----ccccceeeeeeeEeeeeeccc
Confidence 6999999998888876532211 011111111110 234566666777889999987
Q ss_pred cceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEecCCCeEEE
Q 017194 240 ELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKV 319 (375)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~dg~i~i 319 (375)
+ .+.+.+.+|...+..+.++|| +-....+++.||...|
T Consensus 385 g----------------------------------------~l~H~l~ghsd~~yvLd~Hpf--n~ri~msag~dgst~i 422 (1113)
T KOG0644|consen 385 G----------------------------------------QLLHNLMGHSDEVYVLDVHPF--NPRIAMSAGYDGSTII 422 (1113)
T ss_pred c----------------------------------------hhhhhhcccccceeeeeecCC--CcHhhhhccCCCceEe
Confidence 5 556678899999999999974 4467779999999999
Q ss_pred EeCCCceeeeecchhhhhhhhcccccceeeeeecCCCCCcEEEeeCCCeEEEEe
Q 017194 320 WDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYS 373 (375)
Q Consensus 320 wd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~iw~ 373 (375)
||+-.+..+ -....+| ..+..-.|++ +|..++....-|.++|..
T Consensus 423 wdi~eg~pi--------k~y~~gh-~kl~d~kFSq-dgts~~lsd~hgql~i~g 466 (1113)
T KOG0644|consen 423 WDIWEGIPI--------KHYFIGH-GKLVDGKFSQ-DGTSIALSDDHGQLYILG 466 (1113)
T ss_pred eecccCCcc--------eeeeccc-ceeeccccCC-CCceEecCCCCCceEEec
Confidence 999988432 1222444 4555668988 888888877778887764
No 177
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.91 E-value=8.1e-22 Score=174.70 Aligned_cols=329 Identities=16% Similarity=0.174 Sum_probs=221.1
Q ss_pred CCCCCeeeecCCCceeEEEEecCCCCEEEEeCCCCcEEEEecccCc-------eeeEeeecCccEEEEEEeCCCCeEEEE
Q 017194 4 AEAKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKD-------VQLVTDVGNGPVTSLCFKSGNEDIIYV 76 (375)
Q Consensus 4 ~~~~~~~l~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~-------~~~~~~~~~~~v~~l~~~~~~~~l~~~ 76 (375)
.|..+.+|..|...|..++.++..+.+++||+.||+|++|+..+-. ...++......+.++.+.+.++.+|.+
T Consensus 1037 ~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~ 1116 (1431)
T KOG1240|consen 1037 RGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVS 1116 (1431)
T ss_pred cceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEE
Confidence 5677889999999999999988867999999999999999986422 123333347789999999999999999
Q ss_pred cCCCeEEEEECCCCCc--ccc----cccccCCCccee-EEEEcC-CC-CeEEEEeCCCcEEEEeCcCceeeeeEec-Ccc
Q 017194 77 SSGKEVKSFDVHMPAS--WRP----LESYNYNKEEIN-QIVCNP-KS-SFLACADDGGDVKIIDIRQHCLYKSLRA-GHS 146 (375)
Q Consensus 77 ~~d~~i~iwd~~~~~~--~~~----~~~~~~~~~~v~-~~~~~~-~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~ 146 (375)
+.||.|++.+++.... ... +..... .+.+. .-+|.. .+ ..++.+...+.|..||++......+++. ...
T Consensus 1117 t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~-~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~h 1195 (1431)
T KOG1240|consen 1117 TKDGSVRVLRIDHYNVSKRVATQVRIPNLKK-DGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRH 1195 (1431)
T ss_pred cCCCeEEEEEccccccccceeeeeecccccC-CCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccc
Confidence 9999999999875211 111 111111 22333 334433 22 3678888889999999987766555441 234
Q ss_pred cceeEEEEeeCCCcEEEEeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEE
Q 017194 147 SICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVA 226 (375)
Q Consensus 147 ~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~ 226 (375)
+.|++++.+|.+. .++.|+..|.+.+||++-+.++..+..+ +..+++.+..+|. .+.....+++
T Consensus 1196 G~vTSi~idp~~~-WlviGts~G~l~lWDLRF~~~i~sw~~P------------~~~~i~~v~~~~~---~~~~S~~vs~ 1259 (1431)
T KOG1240|consen 1196 GLVTSIVIDPWCN-WLVIGTSRGQLVLWDLRFRVPILSWEHP------------ARAPIRHVWLCPT---YPQESVSVSA 1259 (1431)
T ss_pred cceeEEEecCCce-EEEEecCCceEEEEEeecCceeecccCc------------ccCCcceEEeecc---CCCCceEEEe
Confidence 6899999999999 5999999999999999999998888866 4578888888874 1222444444
Q ss_pred e--cCCcEEEEeCCCcceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCC
Q 017194 227 K--GDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGER 304 (375)
Q Consensus 227 ~--~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 304 (375)
+ ..+.|.+|++.++.....+......+...-+ .|.. ..-+.+.-......+. ..
T Consensus 1260 ~~~~~nevs~wn~~~g~~~~vl~~s~~~p~ls~~-~Ps~--------------------~~~kp~~~~~~~~~~~---~~ 1315 (1431)
T KOG1240|consen 1260 GSSSNNEVSTWNMETGLRQTVLWASDGAPILSYA-LPSN--------------------DARKPDSLAGISCGVC---EK 1315 (1431)
T ss_pred cccCCCceeeeecccCcceEEEEcCCCCcchhhh-cccc--------------------cCCCCCcccceeeecc---cC
Confidence 3 5789999999987544433222100000000 0000 0000112222222333 45
Q ss_pred CcEEEEecCCCeEEEEeCCCceeee-----------------------------e-------cchh------hhh-----
Q 017194 305 GKYLISGGNDKLVKVWDCSRFQGVQ-----------------------------T-------SINN------DLL----- 337 (375)
Q Consensus 305 ~~~l~s~~~dg~i~iwd~~~~~~~~-----------------------------~-------~~~~------~~~----- 337 (375)
+.++++|+.|..|+.||........ . .... ..+
T Consensus 1316 ~~~~ltggsd~kIR~wD~~~p~~ss~~~~~~s~~~~~~~~s~~~~~i~~~~~i~e~i~~~~tv~~t~~~~~~~~~~~~~~ 1395 (1431)
T KOG1240|consen 1316 NGFLLTGGSDMKIRKWDPTRPEISSYAVPGPSTSYSTNSESYDLSTIPGSQFIDEFIIYQQTVGLTEALRENQKLRPGPS 1395 (1431)
T ss_pred CceeeecCCccceeeccCCCcccccccccCccccccccchhccccccCCCccchhhhhhhhhcCchhhcccccccccCCC
Confidence 6799999999999999987654320 0 0000 000
Q ss_pred hhhcccccceeeeeecCCCCCcEEEeeCCCeEEEEe
Q 017194 338 IKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYS 373 (375)
Q Consensus 338 ~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~iw~ 373 (375)
.....|..+|+++++...+..+|++++.||.|+||.
T Consensus 1396 ~ps~~H~d~Itdma~~~~~q~llvs~s~dG~IkiWk 1431 (1431)
T KOG1240|consen 1396 DPSTYHHDPITDMATLKSEQPLLVSSSRDGVIKIWK 1431 (1431)
T ss_pred CCcccccchhhhhhhhccCccEEEEecCCCeeeecC
Confidence 012247889999998875667899999999999994
No 178
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.91 E-value=3.2e-22 Score=156.49 Aligned_cols=225 Identities=16% Similarity=0.267 Sum_probs=169.0
Q ss_pred CCeEEEEEC-CCCCcccccccccCCCcceeEEEEcC-CCCeEEEEeCCCcEEEEeCcCc-------eeeeeEecCcccce
Q 017194 79 GKEVKSFDV-HMPASWRPLESYNYNKEEINQIVCNP-KSSFLACADDGGDVKIIDIRQH-------CLYKSLRAGHSSIC 149 (375)
Q Consensus 79 d~~i~iwd~-~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~-------~~~~~~~~~~~~~v 149 (375)
.|...+.-+ ++|+.........+|.++|..++|+| +.+.||+|++|.+|.||++-.+ +.+..+. +|...|
T Consensus 56 Ggaf~ViPl~k~Gr~d~~~P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~-gH~rrV 134 (472)
T KOG0303|consen 56 GGAFLVIPLVKTGRMDASYPLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELY-GHQRRV 134 (472)
T ss_pred CcceeecccccccccCCCCCCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEe-ecceeE
Confidence 344444444 34555566677789999999999999 6678999999999999998743 4466778 999999
Q ss_pred eEEEEeeCCCcEEEEeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecC
Q 017194 150 SSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGD 229 (375)
Q Consensus 150 ~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~d 229 (375)
.-++|+|.-.++|++++.|.+|.+|++.+++.+..+. |+..|.++.|+- +|.+|++.+.|
T Consensus 135 g~V~wHPtA~NVLlsag~Dn~v~iWnv~tgeali~l~--------------hpd~i~S~sfn~------dGs~l~TtckD 194 (472)
T KOG0303|consen 135 GLVQWHPTAPNVLLSAGSDNTVSIWNVGTGEALITLD--------------HPDMVYSMSFNR------DGSLLCTTCKD 194 (472)
T ss_pred EEEeecccchhhHhhccCCceEEEEeccCCceeeecC--------------CCCeEEEEEecc------CCceeeeeccc
Confidence 9999999988899999999999999999999888876 679999999998 89999999999
Q ss_pred CcEEEEeCCCcceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCc-cEEEEEEeecCCCCcEE
Q 017194 230 GVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTA-AASCVAFSMFGERGKYL 308 (375)
Q Consensus 230 g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~s~~~~~~~~l 308 (375)
..|+|||.++++. +.+-.+|.+ .-..+.|- .+|.++
T Consensus 195 KkvRv~dpr~~~~----------------------------------------v~e~~~heG~k~~Raifl---~~g~i~ 231 (472)
T KOG0303|consen 195 KKVRVIDPRRGTV----------------------------------------VSEGVAHEGAKPARAIFL---ASGKIF 231 (472)
T ss_pred ceeEEEcCCCCcE----------------------------------------eeecccccCCCcceeEEe---ccCcee
Confidence 9999999998632 333345543 23334455 688855
Q ss_pred EEec---CCCeEEEEeCCCceeeeecchhhhhhhhcccccceeeeeecCCCCCcEEEee-CCCeEEEEecC
Q 017194 309 ISGG---NDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCD-TSKVVKVYSIS 375 (375)
Q Consensus 309 ~s~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~-~dg~v~iw~~~ 375 (375)
-||- .+..+-+||..+.+. ........-+..|.-=-+.+ |.+.++.++ .|+.||.|.++
T Consensus 232 tTGfsr~seRq~aLwdp~nl~e-------P~~~~elDtSnGvl~PFyD~-dt~ivYl~GKGD~~IRYyEit 294 (472)
T KOG0303|consen 232 TTGFSRMSERQIALWDPNNLEE-------PIALQELDTSNGVLLPFYDP-DTSIVYLCGKGDSSIRYFEIT 294 (472)
T ss_pred eeccccccccceeccCcccccC-------cceeEEeccCCceEEeeecC-CCCEEEEEecCCcceEEEEec
Confidence 5553 478899999888642 22112222334444333444 777777665 89999999863
No 179
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=2.3e-21 Score=166.43 Aligned_cols=308 Identities=13% Similarity=0.146 Sum_probs=217.4
Q ss_pred cCCCceeEEEEecCCCCEEEEeCCCCcEEEEeccc--C--ceeeEeeecCccEEEEEEeCCCCeEEEEcCCCeEEEEECC
Q 017194 13 GHKATATCCIASRDRPGFVASSGEDGCICWFDLRS--K--DVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVH 88 (375)
Q Consensus 13 ~h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~--~--~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i~iwd~~ 88 (375)
.|.-.++|.+++|. ++++|+|..||.|.+|.--. . .....+.=|..+|.+++|+++|.+|++|+..+.+.+|.+.
T Consensus 203 ~Htf~~t~~~~spn-~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~ 281 (792)
T KOG1963|consen 203 HHTFNITCVALSPN-ERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLE 281 (792)
T ss_pred hhcccceeEEeccc-cceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEeec
Confidence 36677999999999 89999999999999997432 1 2255667789999999999999999999999999999999
Q ss_pred CCCcccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCceeeeeEe----------cCcccceeEEEEeeCC
Q 017194 89 MPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLR----------AGHSSICSSVQFIPWK 158 (375)
Q Consensus 89 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~----------~~~~~~v~~~~~~~~~ 158 (375)
+++ .+.+..+ .++|..+.++||+.+.+....|..|.+....+.....++. ....+-.+.++++|.-
T Consensus 282 T~~-kqfLPRL---gs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~ 357 (792)
T KOG1963|consen 282 TGK-KQFLPRL---GSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRT 357 (792)
T ss_pred CCC-ccccccc---CCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCC
Confidence 887 4555555 6899999999999999999999999998876554443332 0124456788899955
Q ss_pred CcEEEEeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEec--------C-
Q 017194 159 PWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKG--------D- 229 (375)
Q Consensus 159 ~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~--------d- 229 (375)
+ .++-.+..|.|.+||+-+.+.+..+.....+..... ......+++++.+- .|.++++.-. |
T Consensus 358 ~-~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~--~n~~v~itav~~~~------~gs~maT~E~~~d~~~~~~~ 428 (792)
T KOG1963|consen 358 N-SLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGD--VNIQVGITAVARSR------FGSWMATLEARIDKFNFFDG 428 (792)
T ss_pred C-ceeecCCCceEEEEeccccceeeeEEEEeecccCCc--ceeEEeeeeehhhc------cceEEEEeeeeehhhhccCc
Confidence 5 688889999999999998887776654322211111 01223456666655 5888887642 1
Q ss_pred -CcEEEEeCCCcceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeee-eecCCCccEEEEEEeecCCCCc-
Q 017194 230 -GVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDY-SVGGHTAAASCVAFSMFGERGK- 306 (375)
Q Consensus 230 -g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~s~~~~~~~- 306 (375)
-.+++|-.....+ ...+.. ....|...+...++.+ +...
T Consensus 429 e~~LKFW~~n~~~k------------------------------------t~~L~T~I~~PH~~~~vat~~~~--~~rs~ 470 (792)
T KOG1963|consen 429 EVSLKFWQYNPNSK------------------------------------TFILNTKINNPHGNAFVATIFLN--PTRSV 470 (792)
T ss_pred eEEEEEEEEcCCcc------------------------------------eeEEEEEEecCCCceeEEEEEec--Ccccc
Confidence 2455565543211 112222 3346766666666653 3333
Q ss_pred EEEEecCCCeEEEEeCCCceeeeecchhh-hhhhhcccccceeeeeecCCCCCcEEEeeCCCeEEEEec
Q 017194 307 YLISGGNDKLVKVWDCSRFQGVQTSINND-LLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSI 374 (375)
Q Consensus 307 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~iw~~ 374 (375)
..++++.||.++||-+...+.+....... +...-.-|..+++.++|+. || .+++++.|+.|.+||.
T Consensus 471 ~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~i~a~~fs~-dG-slla~s~~~~Itiwd~ 537 (792)
T KOG1963|consen 471 RCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHKTPITALCFSQ-DG-SLLAVSFDDTITIWDY 537 (792)
T ss_pred eeEEeccCCeEEEEEEecccccCcCccceEEeeeeccccCcccchhhcC-CC-cEEEEecCCEEEEecC
Confidence 89999999999999996654432221111 1111112788999999998 98 5777778999999985
No 180
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.90 E-value=1.2e-21 Score=149.47 Aligned_cols=251 Identities=18% Similarity=0.239 Sum_probs=181.2
Q ss_pred cEEEEEEeCCCCeEEEEcCCCeEEEEECCCCCcc---------ccccccc-CCCcceeEEEEc-------CCCCeEEEEe
Q 017194 60 PVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASW---------RPLESYN-YNKEEINQIVCN-------PKSSFLACAD 122 (375)
Q Consensus 60 ~v~~l~~~~~~~~l~~~~~d~~i~iwd~~~~~~~---------~~~~~~~-~~~~~v~~~~~~-------~~~~~l~~~~ 122 (375)
-...+.|+|||..|++-+.|..+.+|++...-.. .....+. .....|...+|- |+..++++.+
T Consensus 51 f~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ss 130 (406)
T KOG2919|consen 51 FLKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSS 130 (406)
T ss_pred hhccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeecc
Confidence 3456899999999999999999999998531100 0000110 113456666664 6778899999
Q ss_pred CCCcEEEEeCcCceeeeeEec-Ccccc---eeEEEEeeCCCcEEEEeecCCeEEEeeC-CCCCcceEEecCCCCCCCCCC
Q 017194 123 DGGDVKIIDIRQHCLYKSLRA-GHSSI---CSSVQFIPWKPWEVISGGLDSKLVMWDF-SKGRPNKIVNFGLPENNGNAG 197 (375)
Q Consensus 123 ~dg~i~iwd~~~~~~~~~~~~-~~~~~---v~~~~~~~~~~~~l~~~~~d~~i~~wd~-~~~~~~~~~~~~~~~~~~~~~ 197 (375)
.+.-|++||.-+++....++. .|... ..+++|+|||. .|++ +....|++||+ +.|........-. .+
T Consensus 131 r~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGe-qlfa-GykrcirvFdt~RpGr~c~vy~t~~------~~ 202 (406)
T KOG2919|consen 131 RDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGE-QLFA-GYKRCIRVFDTSRPGRDCPVYTTVT------KG 202 (406)
T ss_pred ccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCC-eEee-cccceEEEeeccCCCCCCcchhhhh------cc
Confidence 999999999999988776652 24433 45899999998 4555 45789999999 5554322221110 00
Q ss_pred cccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCcceeecccccCCCCCCceeecccccceeeeeeeecCCc
Q 017194 198 QCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGG 277 (375)
Q Consensus 198 ~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~ 277 (375)
.....+-+.+++|+|. +.+.+++|+....+-||.-...
T Consensus 203 k~gq~giisc~a~sP~-----~~~~~a~gsY~q~~giy~~~~~------------------------------------- 240 (406)
T KOG2919|consen 203 KFGQKGIISCFAFSPM-----DSKTLAVGSYGQRVGIYNDDGR------------------------------------- 240 (406)
T ss_pred cccccceeeeeeccCC-----CCcceeeecccceeeeEecCCC-------------------------------------
Confidence 1112456889999997 7789999999888888876642
Q ss_pred ceeEeeeeecCCCccEEEEEEeecCCCCcEEEEecC-CCeEEEEeCCCceeeeecchhhhhhhhccccc-ceee--eeec
Q 017194 278 KRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGN-DKLVKVWDCSRFQGVQTSINNDLLIKNINLNK-KVNW--LCTT 353 (375)
Q Consensus 278 ~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~-~v~~--~~~~ 353 (375)
.++..+.+|.+.|+.+.|. ++|+.|.+|+. |-.|..||++... .++-.+..|.+ .-.. ....
T Consensus 241 ---~pl~llggh~gGvThL~~~---edGn~lfsGaRk~dkIl~WDiR~~~--------~pv~~L~rhv~~TNQRI~FDld 306 (406)
T KOG2919|consen 241 ---RPLQLLGGHGGGVTHLQWC---EDGNKLFSGARKDDKILCWDIRYSR--------DPVYALERHVGDTNQRILFDLD 306 (406)
T ss_pred ---CceeeecccCCCeeeEEec---cCcCeecccccCCCeEEEEeehhcc--------chhhhhhhhccCccceEEEecC
Confidence 4556777999999999999 99999999986 7789999999875 55556666655 2222 3445
Q ss_pred CCCCCcEEEeeCCCeEEEEecC
Q 017194 354 PTESENLVVCDTSKVVKVYSIS 375 (375)
Q Consensus 354 ~~~~~~l~s~~~dg~v~iw~~~ 375 (375)
| ++++|++|+.||.|++||+.
T Consensus 307 ~-~~~~LasG~tdG~V~vwdlk 327 (406)
T KOG2919|consen 307 P-KGEILASGDTDGSVRVWDLK 327 (406)
T ss_pred C-CCceeeccCCCccEEEEecC
Confidence 6 89999999999999999974
No 181
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.90 E-value=4.7e-23 Score=168.16 Aligned_cols=258 Identities=11% Similarity=0.174 Sum_probs=189.6
Q ss_pred eEeeecCccEEEEEEeCCCCeEEEEcCCCeEEEEECCC-----CCcccccccccCCCcceeEEEEcCCCCeEEEEeCCCc
Q 017194 52 LVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHM-----PASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGD 126 (375)
Q Consensus 52 ~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i~iwd~~~-----~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~ 126 (375)
.++..|...|..++|.|....|++++.||.|.+|+++. ....+++.++.+|.++|.|+++.+++..+++|+.||+
T Consensus 288 ~tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~ 367 (577)
T KOG0642|consen 288 FTLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGT 367 (577)
T ss_pred eeeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCce
Confidence 35567889999999999999999999999999999932 3446778889999999999999999999999999999
Q ss_pred EEEEeCcC------c----eeeeeEecCcccceeEEEEeeCCCcEEEEeecCCeEEEeeCCCCCcceEEecCCCCCCCCC
Q 017194 127 VKIIDIRQ------H----CLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNA 196 (375)
Q Consensus 127 i~iwd~~~------~----~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~ 196 (375)
|+.|++.. . .....+. ||.+.|+.+++++... .|++++.||+++.|+.....+ ..+... .
T Consensus 368 I~~w~~p~n~dp~ds~dp~vl~~~l~-Ghtdavw~l~~s~~~~-~Llscs~DgTvr~w~~~~~~~-~~f~~~--~----- 437 (577)
T KOG0642|consen 368 IRCWNLPPNQDPDDSYDPSVLSGTLL-GHTDAVWLLALSSTKD-RLLSCSSDGTVRLWEPTEESP-CTFGEP--K----- 437 (577)
T ss_pred eeeeccCCCCCcccccCcchhcccee-ccccceeeeeeccccc-ceeeecCCceEEeeccCCcCc-cccCCc--c-----
Confidence 99996541 1 2234566 9999999999999887 699999999999999876665 222211 0
Q ss_pred CcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCcceeecccccCCCCCCceeecccccceeeeeeeecCC
Q 017194 197 GQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSG 276 (375)
Q Consensus 197 ~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~ 276 (375)
......++.+... +-...++...-+.-.++++........+....
T Consensus 438 ----e~g~Plsvd~~ss-----~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~-------------------------- 482 (577)
T KOG0642|consen 438 ----EHGYPLSVDRTSS-----RPAHSLASFRFGYTSIDDMEVVSDLLIFESSA-------------------------- 482 (577)
T ss_pred ----ccCCcceEeeccc-----hhHhhhhhcccccccchhhhhhhheeeccccC--------------------------
Confidence 1233455555431 11222222222222333333221111111000
Q ss_pred cceeEeeeeecCCCccEEEEEEeecCCCCcEEEEecCCCeEEEEeCCCceeeeecchhhhhhhhcccccceeeeeecCCC
Q 017194 277 GKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTE 356 (375)
Q Consensus 277 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 356 (375)
..-......+..+... |.+.+.+++..|+.|+++|..++ +++.....|...++++++.| +
T Consensus 483 -------~~~~~~~~~in~vVs~---~~~~~~~~~hed~~Ir~~dn~~~---------~~l~s~~a~~~svtslai~~-n 542 (577)
T KOG0642|consen 483 -------SPGPRRYPQINKVVSH---PTADITFTAHEDRSIRFFDNKTG---------KILHSMVAHKDSVTSLAIDP-N 542 (577)
T ss_pred -------CCcccccCccceEEec---CCCCeeEecccCCceeccccccc---------ccchheeeccceecceeecC-C
Confidence 0000112456677777 88899999999999999999999 78888899999999999999 8
Q ss_pred CCcEEEeeCCCeEEEEec
Q 017194 357 SENLVVCDTSKVVKVYSI 374 (375)
Q Consensus 357 ~~~l~s~~~dg~v~iw~~ 374 (375)
|-+|++++.|+.+++|++
T Consensus 543 g~~l~s~s~d~sv~l~kl 560 (577)
T KOG0642|consen 543 GPYLMSGSHDGSVRLWKL 560 (577)
T ss_pred CceEEeecCCceeehhhc
Confidence 999999999999999986
No 182
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.90 E-value=7.4e-22 Score=163.82 Aligned_cols=158 Identities=11% Similarity=0.170 Sum_probs=118.3
Q ss_pred cceeEEEEeeCCCcEEEEeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEE
Q 017194 147 SICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVA 226 (375)
Q Consensus 147 ~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~ 226 (375)
..|+.+.|.|-+...|++++.||.|++|.+..+......... ......|...|+++.|+|. -...|+++
T Consensus 628 t~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tP------e~~lt~h~eKI~slRfHPL-----AadvLa~a 696 (1012)
T KOG1445|consen 628 TLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTP------EKILTIHGEKITSLRFHPL-----AADVLAVA 696 (1012)
T ss_pred ceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCc------ceeeecccceEEEEEecch-----hhhHhhhh
Confidence 368899999977668999999999999999765332211100 1111225789999999997 67899999
Q ss_pred ecCCcEEEEeCCCcceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCc
Q 017194 227 KGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGK 306 (375)
Q Consensus 227 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~ 306 (375)
+.|-+|++||+.+. .....+.+|.+.|..++|| |+|+
T Consensus 697 syd~Ti~lWDl~~~----------------------------------------~~~~~l~gHtdqIf~~AWS---pdGr 733 (1012)
T KOG1445|consen 697 SYDSTIELWDLANA----------------------------------------KLYSRLVGHTDQIFGIAWS---PDGR 733 (1012)
T ss_pred hccceeeeeehhhh----------------------------------------hhhheeccCcCceeEEEEC---CCCc
Confidence 99999999999975 3334788999999999999 9999
Q ss_pred EEEEecCCCeEEEEeCCCceeeeecchhhhhhhhcc-cccceeeeeecCCCCCcEEEeeCCC
Q 017194 307 YLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNIN-LNKKVNWLCTTPTESENLVVCDTSK 367 (375)
Q Consensus 307 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~s~~~dg 367 (375)
.+|+.+.||+|++|+.++... .+..-.+ ...+-..+.|.- ||++++..+.|.
T Consensus 734 ~~AtVcKDg~~rVy~Prs~e~--------pv~Eg~gpvgtRgARi~wac-dgr~viv~Gfdk 786 (1012)
T KOG1445|consen 734 RIATVCKDGTLRVYEPRSREQ--------PVYEGKGPVGTRGARILWAC-DGRIVIVVGFDK 786 (1012)
T ss_pred ceeeeecCceEEEeCCCCCCC--------ccccCCCCccCcceeEEEEe-cCcEEEEecccc
Confidence 999999999999999998752 2222222 112233445554 889988887664
No 183
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.90 E-value=1.4e-21 Score=166.93 Aligned_cols=251 Identities=19% Similarity=0.213 Sum_probs=187.3
Q ss_pred CCCceeEEEEecCCCCEEEEeCCCCcEEEEecccCce--eeEe----eecCccEEEEEEeCCCC--eEEEEcCCCeEEEE
Q 017194 14 HKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDV--QLVT----DVGNGPVTSLCFKSGNE--DIIYVSSGKEVKSF 85 (375)
Q Consensus 14 h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~--~~~~----~~~~~~v~~l~~~~~~~--~l~~~~~d~~i~iw 85 (375)
-..+|.|+.|+|.+..++|.|..+|.|.+||+..+.. ...+ ..|..++..+.|..+.. -+++++.||.|..|
T Consensus 241 ~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W 320 (555)
T KOG1587|consen 241 SPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSW 320 (555)
T ss_pred cCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeee
Confidence 3578999999999899999999999999999987765 2222 35889999999976544 49999999999999
Q ss_pred ECCCCCccc---cccccc------CCCcceeEEEEcCC-CCeEEEEeCCCcEEEEeCcCc--------eeeeeEecCccc
Q 017194 86 DVHMPASWR---PLESYN------YNKEEINQIVCNPK-SSFLACADDGGDVKIIDIRQH--------CLYKSLRAGHSS 147 (375)
Q Consensus 86 d~~~~~~~~---~~~~~~------~~~~~v~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~--------~~~~~~~~~~~~ 147 (375)
+++.-.... ...... .....++++.|.+. -..+++|+++|.|.--+-... +....+. .|.+
T Consensus 321 ~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~-~h~g 399 (555)
T KOG1587|consen 321 DTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFI-THIG 399 (555)
T ss_pred eccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCccccccccccccccc-ccCc
Confidence 887422211 111111 11346889999984 466899999999887443321 1233445 6889
Q ss_pred ceeEEEEeeCCCcEEEEeecCCeEEEeeCC-CCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEE
Q 017194 148 ICSSVQFIPWKPWEVISGGLDSKLVMWDFS-KGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVA 226 (375)
Q Consensus 148 ~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~ 226 (375)
+|+++.++|-+..+|++++ |.++++|... ...++..+... ...+++++|+|. ....++++
T Consensus 400 ~v~~v~~nPF~~k~fls~g-DW~vriWs~~~~~~Pl~~~~~~-------------~~~v~~vaWSpt-----rpavF~~~ 460 (555)
T KOG1587|consen 400 PVYAVSRNPFYPKNFLSVG-DWTVRIWSEDVIASPLLSLDSS-------------PDYVTDVAWSPT-----RPAVFATV 460 (555)
T ss_pred ceEeeecCCCccceeeeec-cceeEeccccCCCCcchhhhhc-------------cceeeeeEEcCc-----CceEEEEE
Confidence 9999999999985566666 9999999988 66666666533 566999999996 66789999
Q ss_pred ecCCcEEEEeCCCcceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCc
Q 017194 227 KGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGK 306 (375)
Q Consensus 227 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~ 306 (375)
..+|.|.+||+.... ...+.+..-+....+.+.|+ +.|+
T Consensus 461 d~~G~l~iWDLl~~~--------------------------------------~~Pv~s~~~~~~~l~~~~~s---~~g~ 499 (555)
T KOG1587|consen 461 DGDGNLDIWDLLQDD--------------------------------------EEPVLSQKVCSPALTRVRWS---PNGK 499 (555)
T ss_pred cCCCceehhhhhccc--------------------------------------cCCcccccccccccceeecC---CCCc
Confidence 999999999998531 11222333335566778888 8899
Q ss_pred EEEEecCCCeEEEEeCCCc
Q 017194 307 YLISGGNDKLVKVWDCSRF 325 (375)
Q Consensus 307 ~l~s~~~dg~i~iwd~~~~ 325 (375)
.|+.|...|.+.+|++...
T Consensus 500 ~lavGd~~G~~~~~~l~~~ 518 (555)
T KOG1587|consen 500 LLAVGDANGTTHILKLSES 518 (555)
T ss_pred EEEEecCCCcEEEEEcCch
Confidence 9999999999999999754
No 184
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.90 E-value=3.4e-21 Score=146.85 Aligned_cols=223 Identities=13% Similarity=0.125 Sum_probs=174.3
Q ss_pred eeecCCCceeEEEEecCCCCEEEEeCCCCcEEEEecccCc---eeeEeeecCccEEEEEEeCCCCeEEEEcCCCeEEEEE
Q 017194 10 RLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKD---VQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFD 86 (375)
Q Consensus 10 ~l~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~---~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i~iwd 86 (375)
.+.--..+|+|.+|++| ...+|.+..+..|.||.....+ ...++..|...|+.++|+|..+.|++++.|..-++|.
T Consensus 5 ~~~~~~~pitchAwn~d-rt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~ 83 (361)
T KOG1523|consen 5 VFHRLLEPITCHAWNSD-RTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWT 83 (361)
T ss_pred EeeeccCceeeeeecCC-CceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccc
Confidence 44445689999999999 8999999999999999987655 4778889999999999999999999999999999999
Q ss_pred CCCCCcccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCceee---eeEecCcccceeEEEEeeCCCcEEE
Q 017194 87 VHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLY---KSLRAGHSSICSSVQFIPWKPWEVI 163 (375)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~---~~~~~~~~~~v~~~~~~~~~~~~l~ 163 (375)
...+..+++...+..++...+++.|+|.++.|++|+....|.||-++....- +.++..+.+.|+++.|+|++- +++
T Consensus 84 ~~~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnV-Lla 162 (361)
T KOG1523|consen 84 QPSGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNV-LLA 162 (361)
T ss_pred cCCCCeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcc-eec
Confidence 9767777777777777899999999999999999999999999988754321 112215678899999999987 899
Q ss_pred EeecCCeEEEeeCCCCCcceEEecCCCCCCC-----C-CCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeC
Q 017194 164 SGGLDSKLVMWDFSKGRPNKIVNFGLPENNG-----N-AGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINI 237 (375)
Q Consensus 164 ~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~-----~-~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~ 237 (375)
.|+.|+.+++|..--.. +.+-..+.|=... . .......+.++.+.|+| +|..|+-.+.|..+.+-|.
T Consensus 163 aGs~D~k~rVfSayIK~-Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~------sG~~lawv~Hds~v~~~da 235 (361)
T KOG1523|consen 163 AGSTDGKCRVFSAYIKG-VDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSP------SGNRLAWVGHDSTVSFVDA 235 (361)
T ss_pred ccccCcceeEEEEeeec-cccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCC------CCCEeeEecCCCceEEeec
Confidence 99999999999753110 0000000000000 0 00003467899999999 7999999999999999998
Q ss_pred CCcc
Q 017194 238 ESEL 241 (375)
Q Consensus 238 ~~~~ 241 (375)
..+.
T Consensus 236 ~~p~ 239 (361)
T KOG1523|consen 236 AGPS 239 (361)
T ss_pred CCCc
Confidence 8654
No 185
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.90 E-value=6.9e-22 Score=164.93 Aligned_cols=247 Identities=14% Similarity=0.136 Sum_probs=191.2
Q ss_pred CCCCCeeeecCCCceeEEEEecCCCCEEEEeCCCCcEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEEcCCCeEE
Q 017194 4 AEAKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVK 83 (375)
Q Consensus 4 ~~~~~~~l~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i~ 83 (375)
.+..+.+|+||++.|+|++|+.+ |+.+|+|+.|..|.+|+.+-... ..+ .|++.|.|+.|+|-...|++++- ...-
T Consensus 42 dG~llqtLKgHKDtVycVAys~d-GkrFASG~aDK~VI~W~~klEG~-LkY-SH~D~IQCMsFNP~~h~LasCsL-sdFg 117 (1081)
T KOG1538|consen 42 DGTLLQPLKGHKDTVYCVAYAKD-GKRFASGSADKSVIIWTSKLEGI-LKY-SHNDAIQCMSFNPITHQLASCSL-SDFG 117 (1081)
T ss_pred CcccccccccccceEEEEEEccC-CceeccCCCceeEEEecccccce-eee-ccCCeeeEeecCchHHHhhhcch-hhcc
Confidence 46678899999999999999999 99999999999999998653322 222 48999999999999988988874 4567
Q ss_pred EEECCCCCcccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCceeeeeEe--cCcccceeEEEEeeCCC--
Q 017194 84 SFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLR--AGHSSICSSVQFIPWKP-- 159 (375)
Q Consensus 84 iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~--~~~~~~v~~~~~~~~~~-- 159 (375)
+|..+.. .+...+. ...+.+++|..||++++.|-.+|+|.+-+- +++....+. .+.+++|.+++|+|...
T Consensus 118 lWS~~qK----~V~K~ks-s~R~~~CsWtnDGqylalG~~nGTIsiRNk-~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G 191 (1081)
T KOG1538|consen 118 LWSPEQK----SVSKHKS-SSRIICCSWTNDGQYLALGMFNGTISIRNK-NGEEKVKIERPGGSNSPIWSICWNPSSGEG 191 (1081)
T ss_pred ccChhhh----hHHhhhh-heeEEEeeecCCCcEEEEeccCceEEeecC-CCCcceEEeCCCCCCCCceEEEecCCCCCC
Confidence 8987632 2222211 467899999999999999999999999864 444433333 25678999999999643
Q ss_pred --cEEEEeecCCeEEEeeCCCCCcce-EEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEe
Q 017194 160 --WEVISGGLDSKLVMWDFSKGRPNK-IVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVIN 236 (375)
Q Consensus 160 --~~l~~~~~d~~i~~wd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d 236 (375)
..+++.....++.+|.+. |+.+. .-.++ ....++.+.+ +|.++..|+.|+.+++|.
T Consensus 192 ~~di~aV~DW~qTLSFy~Ls-G~~Igk~r~L~--------------FdP~CisYf~------NGEy~LiGGsdk~L~~fT 250 (1081)
T KOG1538|consen 192 RNDILAVADWGQTLSFYQLS-GKQIGKDRALN--------------FDPCCISYFT------NGEYILLGGSDKQLSLFT 250 (1081)
T ss_pred ccceEEEEeccceeEEEEec-ceeecccccCC--------------CCchhheecc------CCcEEEEccCCCceEEEe
Confidence 268888888899999876 44333 22222 3456788877 899999999999999997
Q ss_pred CCCcceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEecCCCe
Q 017194 237 IESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKL 316 (375)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~dg~ 316 (375)
-+. ..+.++......|+.++.. |++++++.|..||+
T Consensus 251 R~G-----------------------------------------vrLGTvg~~D~WIWtV~~~---PNsQ~v~~GCqDGT 286 (1081)
T KOG1538|consen 251 RDG-----------------------------------------VRLGTVGEQDSWIWTVQAK---PNSQYVVVGCQDGT 286 (1081)
T ss_pred ecC-----------------------------------------eEEeeccccceeEEEEEEc---cCCceEEEEEccCe
Confidence 663 2333555567899999999 99999999999999
Q ss_pred EEEEeCCCc
Q 017194 317 VKVWDCSRF 325 (375)
Q Consensus 317 i~iwd~~~~ 325 (375)
|..|++...
T Consensus 287 iACyNl~fS 295 (1081)
T KOG1538|consen 287 IACYNLIFS 295 (1081)
T ss_pred eehhhhHHh
Confidence 999997643
No 186
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.90 E-value=3.8e-21 Score=168.15 Aligned_cols=293 Identities=14% Similarity=0.111 Sum_probs=203.8
Q ss_pred CceeEEEEecCCCCEEEEeCCCCcEEEEecccCceeeEeeec---CccEEEEEEeC--CCCeEEEEcCCCeEEEEECCCC
Q 017194 16 ATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVG---NGPVTSLCFKS--GNEDIIYVSSGKEVKSFDVHMP 90 (375)
Q Consensus 16 ~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~---~~~v~~l~~~~--~~~~l~~~~~d~~i~iwd~~~~ 90 (375)
.+-..+.|+|- ...++++...-.|++||.+.++....+..+ ...|+.+.+-. |...+++++.||.|+||+--..
T Consensus 1065 ~~pk~~~~hpf-~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~ 1143 (1387)
T KOG1517|consen 1065 QPPKTLKFHPF-EPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYAD 1143 (1387)
T ss_pred CCCceeeecCC-CceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEeccccc
Confidence 34566788888 678888887779999999999987777654 46788998865 4567999999999999974322
Q ss_pred --CcccccccccC-------CCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCceeeeeEecCcccceeEEEEeeCCCcE
Q 017194 91 --ASWRPLESYNY-------NKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWE 161 (375)
Q Consensus 91 --~~~~~~~~~~~-------~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 161 (375)
+..+.+....+ ..+.=.-+.|.....+|+++++-..|+|||.+....+..+..+....|+++.-+.....+
T Consensus 1144 ~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~ 1223 (1387)
T KOG1517|consen 1144 KWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNI 1223 (1387)
T ss_pred ccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccceeecccccCCce
Confidence 22222222211 011113456777666777777788999999998888887764556677877655444348
Q ss_pred EEEeecCCeEEEeeCCCCCc---ceEEecCCCCCCCCCCcccCCCc--eeEEeecCCccccCCCC-EEEEEecCCcEEEE
Q 017194 162 VISGGLDSKLVMWDFSKGRP---NKIVNFGLPENNGNAGQCYNPAF--VHAIAIPDADMLDKTNK-ICVVAKGDGVVDVI 235 (375)
Q Consensus 162 l~~~~~d~~i~~wd~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~--v~~~~~~~~~~~~~~~~-~l~~~~~dg~i~i~ 235 (375)
++.|..||.|++||.+...+ +...+. |... |..+.+.+ .|- .|++|+.+|.|++|
T Consensus 1224 i~AGfaDGsvRvyD~R~a~~ds~v~~~R~-------------h~~~~~Iv~~slq~------~G~~elvSgs~~G~I~~~ 1284 (1387)
T KOG1517|consen 1224 IAAGFADGSVRVYDRRMAPPDSLVCVYRE-------------HNDVEPIVHLSLQR------QGLGELVSGSQDGDIQLL 1284 (1387)
T ss_pred EEEeecCCceEEeecccCCccccceeecc-------------cCCcccceeEEeec------CCCcceeeeccCCeEEEE
Confidence 99999999999999986543 222221 2333 88888887 343 59999999999999
Q ss_pred eCCCcceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCC---CccEEEEEEeecCCCCcEEEEec
Q 017194 236 NIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGH---TAAASCVAFSMFGERGKYLISGG 312 (375)
Q Consensus 236 d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~v~~~~~s~~~~~~~~l~s~~ 312 (375)
|++..... -..+...| .+..+++..+ +....+|+|+
T Consensus 1285 DlR~~~~e--------------------------------------~~~~iv~~~~yGs~lTal~VH---~hapiiAsGs 1323 (1387)
T KOG1517|consen 1285 DLRMSSKE--------------------------------------TFLTIVAHWEYGSALTALTVH---EHAPIIASGS 1323 (1387)
T ss_pred ecccCccc--------------------------------------ccceeeeccccCccceeeeec---cCCCeeeecC
Confidence 99973110 00112222 2258899999 8889999999
Q ss_pred CCCeEEEEeCCCceeeeecchhhhhhhhcccccceeeeeecCCCCCcEEEeeCCCeEEEEec
Q 017194 313 NDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSI 374 (375)
Q Consensus 313 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~iw~~ 374 (375)
. +.|+||++...+...-.... .......+.+.+++|+| ---.||+|+.|..|.||..
T Consensus 1324 ~-q~ikIy~~~G~~l~~~k~n~---~F~~q~~gs~scL~FHP-~~~llAaG~~Ds~V~iYs~ 1380 (1387)
T KOG1517|consen 1324 A-QLIKIYSLSGEQLNIIKYNP---GFMGQRIGSVSCLAFHP-HRLLLAAGSADSTVSIYSC 1380 (1387)
T ss_pred c-ceEEEEecChhhhcccccCc---ccccCcCCCcceeeecc-hhHhhhhccCCceEEEeec
Confidence 8 99999999875321100000 01112345679999999 5567889999999999964
No 187
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.89 E-value=3.4e-19 Score=155.79 Aligned_cols=328 Identities=20% Similarity=0.278 Sum_probs=231.8
Q ss_pred CCeeeecCCC-ceeEEEE-ecCCCC-EEEEeCC-CCcEEEEeccc-CceeeEeeecCccEEEEEEeCCCCeEEEEcC-CC
Q 017194 7 KPRRLRGHKA-TATCCIA-SRDRPG-FVASSGE-DGCICWFDLRS-KDVQLVTDVGNGPVTSLCFKSGNEDIIYVSS-GK 80 (375)
Q Consensus 7 ~~~~l~~h~~-~i~~~~~-~~~~~~-~l~s~~~-d~~i~iw~~~~-~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~-d~ 80 (375)
....+.++.. .+..+.+ .++ +. .++..+. |+.+.+|+... ......+..|...|..++|+|+++.+++++. ++
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 178 (466)
T COG2319 100 LIKSLEGLHDSSVSKLALSSPD-GNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDG 178 (466)
T ss_pred eEEEEeccCCCceeeEEEECCC-cceEEeccCCCCccEEEEEecCCCeEEEEEecCcccEEEEEECCCCCEEEecCCCCC
Confidence 3445555443 6777777 777 55 5555444 89999999998 7778888999999999999999998888885 99
Q ss_pred eEEEEECCCCCcccccccccCCCcceeEEEEcCCCC-eEEEEeCCCcEEEEeCcCceeee-eEecCcccceeEEEEeeCC
Q 017194 81 EVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSS-FLACADDGGDVKIIDIRQHCLYK-SLRAGHSSICSSVQFIPWK 158 (375)
Q Consensus 81 ~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~-~~~~~~~~~v~~~~~~~~~ 158 (375)
.+++|+...+ ..+..+..|...|.+++|+|++. .+++++.|+.|++||...+..+. .+. .|.... ...|+|++
T Consensus 179 ~~~~~~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~-~~~~~~-~~~~~~~~ 253 (466)
T COG2319 179 TIKLWDLRTG---KPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLS-GHSDSV-VSSFSPDG 253 (466)
T ss_pred ceEEEEcCCC---ceEEeeccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEeeecC-CCCcce-eEeECCCC
Confidence 9999999863 34444555789999999999998 55555899999999988777777 577 787775 44899998
Q ss_pred CcEEEEeecCCeEEEeeCCCCCc-ceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeC
Q 017194 159 PWEVISGGLDSKLVMWDFSKGRP-NKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINI 237 (375)
Q Consensus 159 ~~~l~~~~~d~~i~~wd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~ 237 (375)
. ++++++.|+.+++||++.... ...+ .. |...+.++.+.| ++..+++++.|+.+.+||.
T Consensus 254 ~-~~~~~~~d~~~~~~~~~~~~~~~~~~-~~------------~~~~v~~~~~~~------~~~~~~~~~~d~~~~~~~~ 313 (466)
T COG2319 254 S-LLASGSSDGTIRLWDLRSSSSLLRTL-SG------------HSSSVLSVAFSP------DGKLLASGSSDGTVRLWDL 313 (466)
T ss_pred C-EEEEecCCCcEEEeeecCCCcEEEEE-ec------------CCccEEEEEECC------CCCEEEEeeCCCcEEEEEc
Confidence 6 788999999999999987665 3333 23 467899999998 6888888888889999998
Q ss_pred CCcceeeccc-ccCCCCCCceeecccccceeeeeeee----cCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEE-e
Q 017194 238 ESELNISRSK-STTKPLKGSQSTSKVNIRDAEMEILD----QSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLIS-G 311 (375)
Q Consensus 238 ~~~~~~~~~~-~~~~~~~~~~~~s~~g~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s-~ 311 (375)
.+........ .........+.+.+++..+...+..+ .+............. ...+..+.++ + ...+.. +
T Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~---~-~~~~~~~~ 388 (466)
T COG2319 314 ETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEG-HSNVLSVSFS---P-DGRVVSSG 388 (466)
T ss_pred CCCceEEEeeecccCCceEEEEECCCCCEEEEeecCCCcEEeeecCCCceeEEecC-CceEEEEEEC---C-CCCEEEEe
Confidence 8766555443 12222355555533323333322111 111111111111111 1227888887 6 433443 7
Q ss_pred cCCCeEEEEeCCCceeeeecchhhhhhhhcccccceeeeeecCCCCCcEEEeeCCCeEEEEecC
Q 017194 312 GNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSIS 375 (375)
Q Consensus 312 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~iw~~~ 375 (375)
..++.+.+|+...... ......+...+....+.+ ++..+++++.++.+++|++.
T Consensus 389 ~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 442 (466)
T COG2319 389 STDGTVRLWDLSTGSL---------LRNLDGHTSRVTSLDFSP-DGKSLASGSSDNTIRLWDLK 442 (466)
T ss_pred cCCCceEEEecccCee---------eeeccCCCCcEEEEEECC-CCcEEEEecCCCcEEEEecc
Confidence 8899999999999743 222222227788888888 88889999999999999863
No 188
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.89 E-value=2.2e-20 Score=159.75 Aligned_cols=276 Identities=15% Similarity=0.106 Sum_probs=192.1
Q ss_pred CcEEEEecccCceeeEeeecCccEEEEEEeCCC-CeEEEEcCCCeEEEEECCCCCc--ccccc-cccCCCcceeEEEEcC
Q 017194 38 GCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGN-EDIIYVSSGKEVKSFDVHMPAS--WRPLE-SYNYNKEEINQIVCNP 113 (375)
Q Consensus 38 ~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~-~~l~~~~~d~~i~iwd~~~~~~--~~~~~-~~~~~~~~v~~~~~~~ 113 (375)
+.+.+|++.........-.-...|.++.|+|.. .+++.|+.+|+|.+||++.+.. ...+. ....|..+++.+.|..
T Consensus 222 ~~~~vW~~~~p~~Pe~~~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~ 301 (555)
T KOG1587|consen 222 GVLLVWSLKNPNTPELVLESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQ 301 (555)
T ss_pred ceEEEEecCCCCCceEEEecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEec
Confidence 479999998763333333357899999999854 5677777899999999987654 22222 2235788999999987
Q ss_pred CCCe--EEEEeCCCcEEEEeCcCceee-e-----eEe-----cCcccceeEEEEeeCCCcEEEEeecCCeEEEeeCCCCC
Q 017194 114 KSSF--LACADDGGDVKIIDIRQHCLY-K-----SLR-----AGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGR 180 (375)
Q Consensus 114 ~~~~--l~~~~~dg~i~iwd~~~~~~~-~-----~~~-----~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~ 180 (375)
+..- +++++.||.|..|+++.-... . ... ......+++++|.+..++.|+.|+++|.|.--+....+
T Consensus 302 ~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~ 381 (555)
T KOG1587|consen 302 NEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYT 381 (555)
T ss_pred cCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCc
Confidence 5444 999999999999998743221 0 000 01134689999999988899999999998874433222
Q ss_pred cce--EEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCcceeecccccCCCCCCcee
Q 017194 181 PNK--IVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQS 258 (375)
Q Consensus 181 ~~~--~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~ 258 (375)
.-. .++ .......|.+.|+++.++|. +..++..+.|..++||......
T Consensus 382 ~~~~~~~~-------~~~~~~~h~g~v~~v~~nPF------~~k~fls~gDW~vriWs~~~~~----------------- 431 (555)
T KOG1587|consen 382 PAPEVSYK-------GHSTFITHIGPVYAVSRNPF------YPKNFLSVGDWTVRIWSEDVIA----------------- 431 (555)
T ss_pred cccccccc-------ccccccccCcceEeeecCCC------ccceeeeeccceeEeccccCCC-----------------
Confidence 111 111 11122336789999999995 4444444449999999987311
Q ss_pred ecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEecCCCeEEEEeCCCceeeeecchhhhhh
Q 017194 259 TSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLI 338 (375)
Q Consensus 259 ~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 338 (375)
.++..+..+...+++++|||.. -..++++..||.|.+||+..... ..+.
T Consensus 432 ----------------------~Pl~~~~~~~~~v~~vaWSptr--pavF~~~d~~G~l~iWDLl~~~~-------~Pv~ 480 (555)
T KOG1587|consen 432 ----------------------SPLLSLDSSPDYVTDVAWSPTR--PAVFATVDGDGNLDIWDLLQDDE-------EPVL 480 (555)
T ss_pred ----------------------CcchhhhhccceeeeeEEcCcC--ceEEEEEcCCCceehhhhhcccc-------CCcc
Confidence 2334555667779999999633 35888999999999999987643 3333
Q ss_pred hhcccccceeeeeecCCCCCcEEEeeCCCeEEEEecC
Q 017194 339 KNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSIS 375 (375)
Q Consensus 339 ~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~iw~~~ 375 (375)
...-+....+.+.|++ .|+.|+.|+..|.+.+|+++
T Consensus 481 s~~~~~~~l~~~~~s~-~g~~lavGd~~G~~~~~~l~ 516 (555)
T KOG1587|consen 481 SQKVCSPALTRVRWSP-NGKLLAVGDANGTTHILKLS 516 (555)
T ss_pred cccccccccceeecCC-CCcEEEEecCCCcEEEEEcC
Confidence 4434455566666666 89999999999999999973
No 189
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.88 E-value=2.2e-21 Score=149.05 Aligned_cols=273 Identities=15% Similarity=0.234 Sum_probs=188.0
Q ss_pred cCCCCCeeeecCCCceeEEEEecC-CCCEEEEeCCCCcEEEEecccCceeeEee--ecC-ccEEEEEEeCCCCeEEEEcC
Q 017194 3 DAEAKPRRLRGHKATATCCIASRD-RPGFVASSGEDGCICWFDLRSKDVQLVTD--VGN-GPVTSLCFKSGNEDIIYVSS 78 (375)
Q Consensus 3 ~~~~~~~~l~~h~~~i~~~~~~~~-~~~~l~s~~~d~~i~iw~~~~~~~~~~~~--~~~-~~v~~l~~~~~~~~l~~~~~ 78 (375)
.+++.+..+++|...++.+.|..+ .+..+.+|+.||+|++||+++......+. .+. .+..+++.+..++.+++|..
T Consensus 58 ~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~~ld~nck~~ii~~GtE 137 (376)
T KOG1188|consen 58 GTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPFICLDLNCKKNIIACGTE 137 (376)
T ss_pred cchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcceEeeccCcCCeEEeccc
Confidence 357788899999999999999774 46789999999999999999876644443 343 56777777767777777653
Q ss_pred ----CCeEEEEECCCCCccccccc-ccCCCcceeEEEEcCC-CCeEEEEeCCCcEEEEeCcCc----eeeeeEecCcccc
Q 017194 79 ----GKEVKSFDVHMPASWRPLES-YNYNKEEINQIVCNPK-SSFLACADDGGDVKIIDIRQH----CLYKSLRAGHSSI 148 (375)
Q Consensus 79 ----d~~i~iwd~~~~~~~~~~~~-~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~----~~~~~~~~~~~~~ 148 (375)
+-.+.+||++..+. .+.. ...|...|++++|+|. .++|++|+.||.|.+||++.. .++.++. |...
T Consensus 138 ~~~s~A~v~lwDvR~~qq--~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~viN--~~sS 213 (376)
T KOG1188|consen 138 LTRSDASVVLWDVRSEQQ--LLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEEDALLHVIN--HGSS 213 (376)
T ss_pred cccCceEEEEEEeccccc--hhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcchhhHHHhhc--ccce
Confidence 45899999997543 1322 3468899999999994 578999999999999999754 2344554 7788
Q ss_pred eeEEEEeeCCCcEEEEeecCCeEEEeeCCCCCcceEEecCCCCCCCC-CCccc-CCCceeEEeecCCccccCCCCEEEEE
Q 017194 149 CSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGN-AGQCY-NPAFVHAIAIPDADMLDKTNKICVVA 226 (375)
Q Consensus 149 v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~v~~~~~~~~~~~~~~~~~l~~~ 226 (375)
|-.+.|..++-..+.+-+...+..+|+++.+.+...+..+ ..... ..... ....|.. .+|. +...++.+
T Consensus 214 I~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~--~~~~~d~r~~~~~dY~I~~--~~~~-----~~~~~~l~ 284 (376)
T KOG1188|consen 214 IHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENP--DVSADDLRKEDNCDYVINE--HSPG-----DKDTCALA 284 (376)
T ss_pred eeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCc--cchhhhHHhhhhhhheeec--ccCC-----CcceEEEe
Confidence 9999999888435888899999999999998865554422 11100 00000 0011111 1232 45566655
Q ss_pred ec-CCcEEEEeCCCcceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecC-CCccEEEEEEeecCCC
Q 017194 227 KG-DGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGG-HTAAASCVAFSMFGER 304 (375)
Q Consensus 227 ~~-dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~s~~~~~ 304 (375)
+. -|...++-+..... ....+....+.+ |..-|+++.|. ..
T Consensus 285 g~~~n~~~~~~~~~~~s----------------------------------~~~~~~~a~l~g~~~eiVR~i~~~---~~ 327 (376)
T KOG1188|consen 285 GTDSNKGTIFPLVDTSS----------------------------------GSLLTEPAILQGGHEEIVRDILFD---VK 327 (376)
T ss_pred ccccCceeEEEeeeccc----------------------------------ccccCccccccCCcHHHHHHHhhh---cc
Confidence 54 55555554442100 111223334555 67778888887 77
Q ss_pred CcEEEEecCCCeEEEEeCCCc
Q 017194 305 GKYLISGGNDKLVKVWDCSRF 325 (375)
Q Consensus 305 ~~~l~s~~~dg~i~iwd~~~~ 325 (375)
+.++.||++||.+.+|..+..
T Consensus 328 ~~~l~TGGEDG~l~~Wk~~da 348 (376)
T KOG1188|consen 328 NDVLYTGGEDGLLQAWKVEDA 348 (376)
T ss_pred cceeeccCCCceEEEEecCCc
Confidence 889999999999999996543
No 190
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.88 E-value=1.5e-20 Score=141.47 Aligned_cols=257 Identities=13% Similarity=0.153 Sum_probs=185.5
Q ss_pred eeEeeecCccEEEEEEeC--C-CCeEEEEcC----CCeEEEEECCCCCc-ccccccccCCCcceeEEEEcCCCC-----e
Q 017194 51 QLVTDVGNGPVTSLCFKS--G-NEDIIYVSS----GKEVKSFDVHMPAS-WRPLESYNYNKEEINQIVCNPKSS-----F 117 (375)
Q Consensus 51 ~~~~~~~~~~v~~l~~~~--~-~~~l~~~~~----d~~i~iwd~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~-----~ 117 (375)
+..+.. .-++.++.|+. + ..+|+.|+. .+.|.|..+..... ...... ..|..+++.+.|.|+.. +
T Consensus 38 iy~Y~a-p~~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~-fd~~YP~tK~~wiPd~~g~~pdl 115 (364)
T KOG0290|consen 38 IYTYNA-PWPLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDAN-FDHPYPVTKLMWIPDSKGVYPDL 115 (364)
T ss_pred EEEecC-CCceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccCC-CCCCCCccceEecCCccccCcch
Confidence 444443 45788899973 2 346777764 35777766653211 111122 35788999999999763 3
Q ss_pred EEEEeCCCcEEEEeCcCc--ee--eeeEe----cCcccceeEEEEeeCCCcEEEEeecCCeEEEeeCCCCCc--ceEEec
Q 017194 118 LACADDGGDVKIIDIRQH--CL--YKSLR----AGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRP--NKIVNF 187 (375)
Q Consensus 118 l~~~~~dg~i~iwd~~~~--~~--~~~~~----~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~--~~~~~~ 187 (375)
||+.+ -.+++|.+... +. ...+. ..+..+++++.|+.-.++++.+++-|-+..+||+.++.. +++.-.
T Consensus 116 LATs~--D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLI 193 (364)
T KOG0290|consen 116 LATSS--DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLI 193 (364)
T ss_pred hhccc--CeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEE
Confidence 55543 47999998732 11 11111 145679999999988887899999999999999998743 333333
Q ss_pred CCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCcceeecccccCCCCCCceeeccccccee
Q 017194 188 GLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDA 267 (375)
Q Consensus 188 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~ 267 (375)
. |...|..++|... .-+.+++.+.||.+++||++..+..
T Consensus 194 A------------HDKEV~DIaf~~~-----s~~~FASvgaDGSvRmFDLR~leHS------------------------ 232 (364)
T KOG0290|consen 194 A------------HDKEVYDIAFLKG-----SRDVFASVGADGSVRMFDLRSLEHS------------------------ 232 (364)
T ss_pred e------------cCcceeEEEeccC-----ccceEEEecCCCcEEEEEecccccc------------------------
Confidence 3 7889999999873 4578999999999999999974221
Q ss_pred eeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEecCC-CeEEEEeCCCceeeeecchhhhhhhhcccccc
Q 017194 268 EMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGND-KLVKVWDCSRFQGVQTSINNDLLIKNINLNKK 346 (375)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~d-g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (375)
..+++-.....+...++|++ .|-+++|+-..| ..|.|-|++... ..+..+.+|.+.
T Consensus 233 -------------TIIYE~p~~~~pLlRLswnk--qDpnymATf~~dS~~V~iLDiR~P~--------tpva~L~~H~a~ 289 (364)
T KOG0290|consen 233 -------------TIIYEDPSPSTPLLRLSWNK--QDPNYMATFAMDSNKVVILDIRVPC--------TPVARLRNHQAS 289 (364)
T ss_pred -------------eEEecCCCCCCcceeeccCc--CCchHHhhhhcCCceEEEEEecCCC--------cceehhhcCccc
Confidence 22333333356788899985 456788887665 469999999875 567789999999
Q ss_pred eeeeeecCCCCCcEEEeeCCCeEEEEecC
Q 017194 347 VNWLCTTPTESENLVVCDTSKVVKVYSIS 375 (375)
Q Consensus 347 v~~~~~~~~~~~~l~s~~~dg~v~iw~~~ 375 (375)
|+.++|.|..+..|++++.|..+.+||+.
T Consensus 290 VNgIaWaPhS~~hictaGDD~qaliWDl~ 318 (364)
T KOG0290|consen 290 VNGIAWAPHSSSHICTAGDDCQALIWDLQ 318 (364)
T ss_pred ccceEecCCCCceeeecCCcceEEEEecc
Confidence 99999999999999999999999999984
No 191
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.88 E-value=4.6e-19 Score=137.92 Aligned_cols=199 Identities=11% Similarity=0.156 Sum_probs=162.7
Q ss_pred ceeEEEEecCCCCEEEEeCCC--CcEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEEcCCCeEEEEECCCCCccc
Q 017194 17 TATCCIASRDRPGFVASSGED--GCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWR 94 (375)
Q Consensus 17 ~i~~~~~~~~~~~~l~s~~~d--~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~ 94 (375)
.|.-+-|+.. ++|..+.+ +.+++.++.++..+..+.. ..+|.++.++. ++|+++-. ..|+|||+++.+.+.
T Consensus 48 ~IvEmLFSSS---LvaiV~~~qpr~Lkv~~~Kk~~~ICe~~f-pt~IL~VrmNr--~RLvV~Le-e~IyIydI~~MklLh 120 (391)
T KOG2110|consen 48 SIVEMLFSSS---LVAIVSIKQPRKLKVVHFKKKTTICEIFF-PTSILAVRMNR--KRLVVCLE-ESIYIYDIKDMKLLH 120 (391)
T ss_pred EEEEeecccc---eeEEEecCCCceEEEEEcccCceEEEEec-CCceEEEEEcc--ceEEEEEc-ccEEEEecccceeeh
Confidence 3555666643 55544443 4599999988887777763 67889999874 45665554 449999999988888
Q ss_pred ccccccCCCcceeEEEEcCCCCeEEEEe--CCCcEEEEeCcCceeeeeEecCcccceeEEEEeeCCCcEEEEeecCCe-E
Q 017194 95 PLESYNYNKEEINQIVCNPKSSFLACAD--DGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSK-L 171 (375)
Q Consensus 95 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~-i 171 (375)
.+.....+...+..+.+++.+.+++.-+ ..|.|.+||..+-+.+..+. .|.+.+-+++|+++|. +||++++.|+ |
T Consensus 121 TI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~-aH~~~lAalafs~~G~-llATASeKGTVI 198 (391)
T KOG2110|consen 121 TIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVNTIN-AHKGPLAALAFSPDGT-LLATASEKGTVI 198 (391)
T ss_pred hhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEcccceeeeEEE-ecCCceeEEEECCCCC-EEEEeccCceEE
Confidence 8888777777888888888888988643 57899999999999999999 9999999999999999 8999999997 6
Q ss_pred EEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCcc
Q 017194 172 VMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESEL 241 (375)
Q Consensus 172 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~ 241 (375)
|++.+.+|+.+.++.-+. .+..|.+++|+| ++++|++.+..++|++|.+....
T Consensus 199 RVf~v~~G~kl~eFRRG~-----------~~~~IySL~Fs~------ds~~L~~sS~TeTVHiFKL~~~~ 251 (391)
T KOG2110|consen 199 RVFSVPEGQKLYEFRRGT-----------YPVSIYSLSFSP------DSQFLAASSNTETVHIFKLEKVS 251 (391)
T ss_pred EEEEcCCccEeeeeeCCc-----------eeeEEEEEEECC------CCCeEEEecCCCeEEEEEecccc
Confidence 899999999999998652 256799999999 89999999999999999998643
No 192
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.87 E-value=1.1e-19 Score=143.63 Aligned_cols=201 Identities=18% Similarity=0.177 Sum_probs=151.2
Q ss_pred eEEEEcCCCCeEEEEeCCCcEEEEeCcCceeeeeEecCcccceeEEEEeeCCCcEEEEeecCCeEEEeeCCCCCcceEEe
Q 017194 107 NQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVN 186 (375)
Q Consensus 107 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~ 186 (375)
..++|+++|..+++++.||++|+|+..+...+.... .|...|.++.|+|||+ +|++-+.| ..++|+.+++..+....
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~-~~~~eV~DL~FS~dgk-~lasig~d-~~~VW~~~~g~~~a~~t 224 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEI-AHHAEVKDLDFSPDGK-FLASIGAD-SARVWSVNTGAALARKT 224 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhH-hhcCccccceeCCCCc-EEEEecCC-ceEEEEeccCchhhhcC
Confidence 679999999999999999999999977777766666 7999999999999999 89999999 89999999997666554
Q ss_pred cCCCCCCCCCCcccCCCceeEEeecCCccccCCC-----CEEEEEecCCcEEEEeCCCcceeecccccCCCCCCceeecc
Q 017194 187 FGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTN-----KICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSK 261 (375)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-----~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~ 261 (375)
... .+.....+.|+. ++ .+++....-+.|+.||+......
T Consensus 225 ~~~-----------k~~~~~~cRF~~------d~~~~~l~laa~~~~~~~v~~~~~~~w~~~------------------ 269 (398)
T KOG0771|consen 225 PFS-----------KDEMFSSCRFSV------DNAQETLRLAASQFPGGGVRLCDISLWSGS------------------ 269 (398)
T ss_pred Ccc-----------cchhhhhceecc------cCCCceEEEEEecCCCCceeEEEeeeeccc------------------
Confidence 110 233445566665 23 22333334567777777642110
Q ss_pred cccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEecCCCeEEEEeCCCceeeeecchhhhhhhhc
Q 017194 262 VNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNI 341 (375)
Q Consensus 262 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 341 (375)
..++....+ .....|.+++.+ ++|+++|.|+.||.|.|++..+.+. ......
T Consensus 270 ----------------~~l~~~~~~-~~~~siSsl~VS---~dGkf~AlGT~dGsVai~~~~~lq~--------~~~vk~ 321 (398)
T KOG0771|consen 270 ----------------NFLRLRKKI-KRFKSISSLAVS---DDGKFLALGTMDGSVAIYDAKSLQR--------LQYVKE 321 (398)
T ss_pred ----------------cccchhhhh-hccCcceeEEEc---CCCcEEEEeccCCcEEEEEeceeee--------eEeehh
Confidence 001111122 224579999999 9999999999999999999999853 333456
Q ss_pred ccccceeeeeecCCCCCcEEEeeCCCeEEEEec
Q 017194 342 NLNKKVNWLCTTPTESENLVVCDTSKVVKVYSI 374 (375)
Q Consensus 342 ~~~~~v~~~~~~~~~~~~l~s~~~dg~v~iw~~ 374 (375)
.|...|+.+.|+| |.+++++.+.|....+..+
T Consensus 322 aH~~~VT~ltF~P-dsr~~~svSs~~~~~v~~l 353 (398)
T KOG0771|consen 322 AHLGFVTGLTFSP-DSRYLASVSSDNEAAVTKL 353 (398)
T ss_pred hheeeeeeEEEcC-CcCcccccccCCceeEEEE
Confidence 7999999999999 9999999999988877654
No 193
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.86 E-value=2.3e-18 Score=148.31 Aligned_cols=341 Identities=15% Similarity=0.123 Sum_probs=222.0
Q ss_pred CcCCCCCeeeecCCCceeEEEEecCCC--CEEEEeCCCCcEEEEecccCceeeEeeecCccEEE----------------
Q 017194 2 TDAEAKPRRLRGHKATATCCIASRDRP--GFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTS---------------- 63 (375)
Q Consensus 2 ~~~~~~~~~l~~h~~~i~~~~~~~~~~--~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~---------------- 63 (375)
..|+.+++.|.+|..++..+.+.|... .++.+++.||.|++||...++.++++..+ .++.+
T Consensus 44 ~~Tg~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Llkt~~~~-~~v~~~~~~~~~a~~s~~~~~ 122 (792)
T KOG1963|consen 44 TATGECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGELLKTFDNN-LPVHALVYKPAQADISANVYV 122 (792)
T ss_pred cchHhhhhhcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcEEEEEEecC-CceeEEEechhHhCccceeEe
Confidence 357788899999999999999988744 46779999999999999988776665432 11111
Q ss_pred -------------------------------------------EEEeCCCCeEEEEcCCCeEEEEECCCCCcc-cccccc
Q 017194 64 -------------------------------------------LCFKSGNEDIIYVSSGKEVKSFDVHMPASW-RPLESY 99 (375)
Q Consensus 64 -------------------------------------------l~~~~~~~~l~~~~~d~~i~iwd~~~~~~~-~~~~~~ 99 (375)
+.+++.|.+.. ...+..+.+|...+.... .....-
T Consensus 123 s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~~~ge~~~-i~~~~~~~~~~v~~~~~~~~~~~~~ 201 (792)
T KOG1963|consen 123 SVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDNNSGEFKG-IVHMCKIHIYFVPKHTKHTSSRDIT 201 (792)
T ss_pred ecccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccEEEcCCceEEE-EEEeeeEEEEEecccceeeccchhh
Confidence 22222222111 111334556665543211 111112
Q ss_pred cCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcC----ceeeeeEecCcccceeEEEEeeCCCcEEEEeecCCeEEEee
Q 017194 100 NYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQ----HCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWD 175 (375)
Q Consensus 100 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~----~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd 175 (375)
..|.-.+++.+++|.++++++|..||.|.+|.--. ......+. -|..+|++++|+++|. .|++|+..|.+.+|.
T Consensus 202 ~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lH-WH~~~V~~L~fS~~G~-~LlSGG~E~VLv~Wq 279 (792)
T KOG1963|consen 202 VHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLH-WHHDEVNSLSFSSDGA-YLLSGGREGVLVLWQ 279 (792)
T ss_pred hhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEE-ecccccceeEEecCCc-eEeecccceEEEEEe
Confidence 23566689999999999999999999999997432 12345666 7889999999999999 699999999999999
Q ss_pred CCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCcceeeccccc------
Q 017194 176 FSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKST------ 249 (375)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~------ 249 (375)
+.+++...-.++ ..+|..+.++| ++.+.++...|+.|.+....+..........
T Consensus 280 ~~T~~kqfLPRL--------------gs~I~~i~vS~------ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~ 339 (792)
T KOG1963|consen 280 LETGKKQFLPRL--------------GSPILHIVVSP------DSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPS 339 (792)
T ss_pred ecCCCccccccc--------------CCeeEEEEEcC------CCCeEEEEecCceEEEEeccchhhhhhccCccCCCcc
Confidence 999884433333 37899999999 8999999999999999988665443322211
Q ss_pred ----CCCCCCceeecccccceee------eeeeecCCcceeEeeeee--c------CCCccEEEEEEeecCCCCcEEEEe
Q 017194 250 ----TKPLKGSQSTSKVNIRDAE------MEILDQSGGKRLHLDYSV--G------GHTAAASCVAFSMFGERGKYLISG 311 (375)
Q Consensus 250 ----~~~~~~~~~~s~~g~~~~~------~~~~~~~~~~~~~~~~~~--~------~~~~~v~~~~~s~~~~~~~~l~s~ 311 (375)
.....+.+++.|.-+.++. +..++.........+... . .+...+++++.+ ..|.+++|.
T Consensus 340 ~k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~---~~gs~maT~ 416 (792)
T KOG1963|consen 340 TKTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARS---RFGSWMATL 416 (792)
T ss_pred ccccccccceeEEEcCCCCceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhh---ccceEEEEe
Confidence 1233445566664444433 112222222222111111 0 123457777877 679999986
Q ss_pred cC--------C--CeEEEEeCCCceeeeecchhhhh-hhhcccccceeeeeecCCC-CCcEEEeeCCCeEEEEec
Q 017194 312 GN--------D--KLVKVWDCSRFQGVQTSINNDLL-IKNINLNKKVNWLCTTPTE-SENLVVCDTSKVVKVYSI 374 (375)
Q Consensus 312 ~~--------d--g~i~iwd~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~-~~~l~s~~~dg~v~iw~~ 374 (375)
-. | -.+++|-........ .+. .....|...+...++.++. ....++++.||.++||-+
T Consensus 417 E~~~d~~~~~~~e~~LKFW~~n~~~kt~-----~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~ 486 (792)
T KOG1963|consen 417 EARIDKFNFFDGEVSLKFWQYNPNSKTF-----ILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVF 486 (792)
T ss_pred eeeehhhhccCceEEEEEEEEcCCccee-----EEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEE
Confidence 42 2 357889776543210 111 1223577666666665533 338999999999999976
No 194
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.86 E-value=6.5e-20 Score=149.36 Aligned_cols=263 Identities=13% Similarity=0.098 Sum_probs=178.3
Q ss_pred cCCCceeEEEEecCCCCEEEEeCCCCcEEEEecccCceeeEeeecCccEEEEEE-eC-------CCCeEEEEcCCCeEEE
Q 017194 13 GHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCF-KS-------GNEDIIYVSSGKEVKS 84 (375)
Q Consensus 13 ~h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~-~~-------~~~~l~~~~~d~~i~i 84 (375)
-|...|.|+.|+.. ...+.+ +.|..+.+|.--+......+.....-|....+ -+ ....++.++.||.+.+
T Consensus 12 r~~e~vc~v~w~~~-eei~~~-~dDh~~~~~~~~~~~s~~~~~~p~df~pt~~h~~~rs~~~g~~~d~~~i~s~DGkf~i 89 (737)
T KOG1524|consen 12 RNSEKVCCVDWSSN-EEIYFV-SDDHQIFKWSDVSRDSVEVAKLPDDFVPTDMHLGGRSSGGGKGSDTLLICSNDGRFVI 89 (737)
T ss_pred ccceeEEeeccccc-ceEEEe-ccCceEEEeecccchhhhhhhCCcccCCccccccccccCCCCCcceEEEEcCCceEEE
Confidence 47778889999986 444444 45556666654433333333222222222111 11 2346888899999988
Q ss_pred EECCCCCcccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCceeeeeEecCcccceeEEEEeeCCCcEEEE
Q 017194 85 FDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVIS 164 (375)
Q Consensus 85 wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~ 164 (375)
.+-. .+.-.....|.+.+.+-.|+|||.-|+++++||.|++|. ++|-...++. ....+|.|++|.|+.+..+.+
T Consensus 90 l~k~----~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWS-rsGMLRStl~-Q~~~~v~c~~W~p~S~~vl~c 163 (737)
T KOG1524|consen 90 LNKS----ARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWS-RSGMLRSTVV-QNEESIRCARWAPNSNSIVFC 163 (737)
T ss_pred eccc----chhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEe-ccchHHHHHh-hcCceeEEEEECCCCCceEEe
Confidence 8744 234455667899999999999999999999999999998 4665555555 567899999999999865555
Q ss_pred eecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCcceee
Q 017194 165 GGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNIS 244 (375)
Q Consensus 165 ~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~ 244 (375)
.+ +.+.+=.+.....+-.++. |.+-|.++.|++ ..+++++|++|-..++||...
T Consensus 164 ~g--~h~~IKpL~~n~k~i~WkA-------------HDGiiL~~~W~~------~s~lI~sgGED~kfKvWD~~G----- 217 (737)
T KOG1524|consen 164 QG--GHISIKPLAANSKIIRWRA-------------HDGLVLSLSWST------QSNIIASGGEDFRFKIWDAQG----- 217 (737)
T ss_pred cC--CeEEEeecccccceeEEec-------------cCcEEEEeecCc------cccceeecCCceeEEeecccC-----
Confidence 44 4666666665555556663 578999999999 699999999999999999875
Q ss_pred cccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEecCCCeEEEEeCCC
Q 017194 245 RSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSR 324 (375)
Q Consensus 245 ~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd~~~ 324 (375)
+.++.-..|..+|++++|. |+ +.++.++. +++++= .
T Consensus 218 ------------------------------------~~Lf~S~~~ey~ITSva~n---pd-~~~~v~S~-nt~R~~---~ 253 (737)
T KOG1524|consen 218 ------------------------------------ANLFTSAAEEYAITSVAFN---PE-KDYLLWSY-NTARFS---S 253 (737)
T ss_pred ------------------------------------cccccCChhccceeeeeec---cc-cceeeeee-eeeeec---C
Confidence 3344555667777777777 66 45555443 233311 1
Q ss_pred ceeeeecchhhhhhhhcccccceeeeeecCCCCCcEEEeeCCCeEEE
Q 017194 325 FQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKV 371 (375)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~i 371 (375)
...+.|..++|++ ||..++.|...|.|.+
T Consensus 254 -----------------p~~GSifnlsWS~-DGTQ~a~gt~~G~v~~ 282 (737)
T KOG1524|consen 254 -----------------PRVGSIFNLSWSA-DGTQATCGTSTGQLIV 282 (737)
T ss_pred -----------------CCccceEEEEEcC-CCceeeccccCceEEE
Confidence 1235667777777 7777777766666543
No 195
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.86 E-value=8.9e-20 Score=143.40 Aligned_cols=257 Identities=15% Similarity=0.153 Sum_probs=180.6
Q ss_pred CeeeecCCCceeEEEEecCCCCEEEEeCCCCcEEEEecc--------c--------CceeeEeeecCccEEEEEEeCCCC
Q 017194 8 PRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLR--------S--------KDVQLVTDVGNGPVTSLCFKSGNE 71 (375)
Q Consensus 8 ~~~l~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~--------~--------~~~~~~~~~~~~~v~~l~~~~~~~ 71 (375)
+..|..|+..|+++.|+|+ |++||+|+.+|.|.+|... + ....+.+.+|...|..++|+|++.
T Consensus 58 ~s~Ls~H~~aVN~vRf~p~-gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~ 136 (434)
T KOG1009|consen 58 LSSLSRHTRAVNVVRFSPD-GELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSN 136 (434)
T ss_pred eecccCCcceeEEEEEcCC-cCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCc
Confidence 4567889999999999999 9999999999999999866 2 122556778999999999999999
Q ss_pred eEEEEcCCCeEEEEECCCCCcccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCceeeeeEe---------
Q 017194 72 DIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLR--------- 142 (375)
Q Consensus 72 ~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~--------- 142 (375)
++++++-|+.+++||+..+ .....+..|...+..++|.|-++++++-+.|...+.+++...+.+....
T Consensus 137 ~l~s~s~dns~~l~Dv~~G---~l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~ 213 (434)
T KOG1009|consen 137 FLVSGSVDNSVRLWDVHAG---QLLAILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAF 213 (434)
T ss_pred eeeeeeccceEEEEEeccc---eeEeeccccccccceeecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeeccc
Confidence 9999999999999999975 4556667789999999999999999999888877777665332221110
Q ss_pred ---------cCcc----cceeEEEEeeCCCcEEEEeec----CC-----eEEEeeCCCC-CcceEEecCCCCCCCCCCcc
Q 017194 143 ---------AGHS----SICSSVQFIPWKPWEVISGGL----DS-----KLVMWDFSKG-RPNKIVNFGLPENNGNAGQC 199 (375)
Q Consensus 143 ---------~~~~----~~v~~~~~~~~~~~~l~~~~~----d~-----~i~~wd~~~~-~~~~~~~~~~~~~~~~~~~~ 199 (375)
.-|. .....++|+|+|. ++++... .+ ..++|+-... ++...+..
T Consensus 214 ~~~e~~s~rLfhDeTlksFFrRlsfTPdG~-llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~------------ 280 (434)
T KOG1009|consen 214 NEREGKSTRLFHDETLKSFFRRLSFTPDGS-LLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPS------------ 280 (434)
T ss_pred CCCCcceeeeeecCchhhhhhhcccCCCCc-EEEcccceeeeCCceeeceeEeeccccccCceeecCC------------
Confidence 0011 2345678899998 6776431 22 2234432211 12222211
Q ss_pred cCCCceeEEeecCCccc------------cCCCCEEEEEecCCcEEEEeCCCcceeecccccCCCCCCceeeccccccee
Q 017194 200 YNPAFVHAIAIPDADML------------DKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDA 267 (375)
Q Consensus 200 ~~~~~v~~~~~~~~~~~------------~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~ 267 (375)
.......+.++|..+. =|-+..+++++.+ .+.+||..+..
T Consensus 281 -~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt~~-svyvydtq~~~-------------------------- 332 (434)
T KOG1009|consen 281 -PKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIATKN-SVYVYDTQTLE-------------------------- 332 (434)
T ss_pred -CCcceEEEEeeeeEEEeccccccccccccccceEEEEeecc-eEEEecccccc--------------------------
Confidence 1234555566554210 1234456666654 89999998632
Q ss_pred eeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEecCCCeEEEEeCCCc
Q 017194 268 EMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRF 325 (375)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd~~~~ 325 (375)
.+...-.-|-..++.++|+ +||.+|+..+.||...+-..+..
T Consensus 333 -------------P~~~v~nihy~~iTDiaws---~dg~~l~vSS~DGyCS~vtfe~~ 374 (434)
T KOG1009|consen 333 -------------PLAVVDNIHYSAITDIAWS---DDGSVLLVSSTDGFCSLVTFEPW 374 (434)
T ss_pred -------------ceEEEeeeeeeeecceeec---CCCcEEEEeccCCceEEEEEcch
Confidence 1112333467889999999 99999999999998887776665
No 196
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.86 E-value=3.2e-20 Score=145.56 Aligned_cols=259 Identities=11% Similarity=0.070 Sum_probs=188.2
Q ss_pred eeEeeecCccEEEEEEeCCCCeEEEEcCCCeEEEEECCC---CCccccccccc-CCCcceeEEEEcCCCCeEEEEeCCCc
Q 017194 51 QLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHM---PASWRPLESYN-YNKEEINQIVCNPKSSFLACADDGGD 126 (375)
Q Consensus 51 ~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i~iwd~~~---~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~ 126 (375)
.+.+.+|.+.|+++.|+.++++|++|+.|..+++|+++. .+..+++.... .|...|.+++|...++++++|..+++
T Consensus 49 qKD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~ 128 (609)
T KOG4227|consen 49 QKDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGT 128 (609)
T ss_pred hhhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcce
Confidence 344567999999999999999999999999999999863 12223444332 35589999999999999999999999
Q ss_pred EEEEeCcCceeeeeEecCccc---ceeEEEEeeCCCcEEEEeecCCeEEEeeCCCCC-cceEEecCCCCCCCCCCcccCC
Q 017194 127 VKIIDIRQHCLYKSLRAGHSS---ICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGR-PNKIVNFGLPENNGNAGQCYNP 202 (375)
Q Consensus 127 i~iwd~~~~~~~~~~~~~~~~---~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 202 (375)
|...|+++.+.+..+. |.. .|..+..+|..+ .|++.+.++.|.+||.+... ....+-... .+
T Consensus 129 VI~HDiEt~qsi~V~~--~~~~~~~VY~m~~~P~DN-~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN-----------~~ 194 (609)
T KOG4227|consen 129 VIKHDIETKQSIYVAN--ENNNRGDVYHMDQHPTDN-TLIVVTRAKLVSFIDNRDRQNPISLVLPAN-----------SG 194 (609)
T ss_pred eEeeecccceeeeeec--ccCcccceeecccCCCCc-eEEEEecCceEEEEeccCCCCCCceeeecC-----------CC
Confidence 9999999999888876 444 899999999977 89999999999999998765 332222110 24
Q ss_pred CceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCcceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEe
Q 017194 203 AFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHL 282 (375)
Q Consensus 203 ~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~ 282 (375)
...+++.|+|. ...+|++++..+-+-+||.+.......... .
T Consensus 195 ~~F~t~~F~P~-----~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~---------------------------------~ 236 (609)
T KOG4227|consen 195 KNFYTAEFHPE-----TPALILVNSETGGPNVFDRRMQARPVYQRS---------------------------------M 236 (609)
T ss_pred ccceeeeecCC-----CceeEEeccccCCCCceeeccccchHHhhh---------------------------------c
Confidence 56788999997 788999999999999999997543321110 0
Q ss_pred eeeecCCCccEEEEEEeecCCCCcEEEEecCCCeEEEEeCCCceeeeecchhhhhhhhccc-------ccceeeeeecCC
Q 017194 283 DYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINL-------NKKVNWLCTTPT 355 (375)
Q Consensus 283 ~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~-------~~~v~~~~~~~~ 355 (375)
...+......-.++.|+ |+|..|++--....-.+||+.+.. +......| ...+.+++|.-
T Consensus 237 ~~~L~~~~~~~M~~~~~---~~G~Q~msiRR~~~P~~~D~~S~R---------~~V~k~D~N~~GY~N~~T~KS~~F~~- 303 (609)
T KOG4227|consen 237 FKGLPQENTEWMGSLWS---PSGNQFMSIRRGKCPLYFDFISQR---------CFVLKSDHNPNGYCNIKTIKSMTFID- 303 (609)
T ss_pred cccCcccchhhhheeeC---CCCCeehhhhccCCCEEeeeeccc---------ceeEeccCCCCcceeeeeeeeeeeec-
Confidence 01122212233556788 788877776666666677777752 22122222 23466777754
Q ss_pred CCCcEEEeeCCCeEEEEecC
Q 017194 356 ESENLVVCDTSKVVKVYSIS 375 (375)
Q Consensus 356 ~~~~l~s~~~dg~v~iw~~~ 375 (375)
| ..+++|+.+=.|++|.++
T Consensus 304 D-~~v~tGSD~~~i~~WklP 322 (609)
T KOG4227|consen 304 D-YTVATGSDHWGIHIWKLP 322 (609)
T ss_pred c-eeeeccCcccceEEEecC
Confidence 4 459999999999999875
No 197
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.85 E-value=1.6e-17 Score=138.51 Aligned_cols=310 Identities=15% Similarity=0.180 Sum_probs=193.8
Q ss_pred CEE-EEeCCCCcEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEEcCCCeEEEEECCCCCcccccccccCCCccee
Q 017194 29 GFV-ASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEIN 107 (375)
Q Consensus 29 ~~l-~s~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~ 107 (375)
+++ ++-..++.|.+.|..+.+.+..+......-..+.|+|||+++++++.||.|.++|+.+.+....+.. .....
T Consensus 6 ~l~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~----G~~~~ 81 (369)
T PF02239_consen 6 NLFYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKV----GGNPR 81 (369)
T ss_dssp GEEEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-----SSEEE
T ss_pred cEEEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEec----CCCcc
Confidence 344 4556689999999999999999987555545678999999999999999999999998776666655 45678
Q ss_pred EEEEcCCCCeEEEEe-CCCcEEEEeCcCceeeeeEecC------cccceeEEEEeeCCCcEEEEeecCCeEEEeeCCCCC
Q 017194 108 QIVCNPKSSFLACAD-DGGDVKIIDIRQHCLYKSLRAG------HSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGR 180 (375)
Q Consensus 108 ~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~------~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~ 180 (375)
.+++++||++++++. .++.+.++|.++.+.++.+..+ ....+.++..+|..+.++++.-+.+.|.+.|....+
T Consensus 82 ~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~ 161 (369)
T PF02239_consen 82 GIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPK 161 (369)
T ss_dssp EEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSS
T ss_pred eEEEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEecccc
Confidence 899999999988776 6899999999999998887621 234677888888887434444556899999988766
Q ss_pred cceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEE-ecCCcEEEEeCCCcceeecccccCCCCCCc---
Q 017194 181 PNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVA-KGDGVVDVINIESELNISRSKSTTKPLKGS--- 256 (375)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~--- 256 (375)
.+..-... .........|+| ++++++++ ..++.|-++|..+.+..........+....
T Consensus 162 ~~~~~~i~------------~g~~~~D~~~dp------dgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~ 223 (369)
T PF02239_consen 162 NLKVTTIK------------VGRFPHDGGFDP------DGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGAN 223 (369)
T ss_dssp CEEEEEEE--------------TTEEEEEE-T------TSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEE
T ss_pred ccceeeec------------ccccccccccCc------ccceeeecccccceeEEEeeccceEEEEeecccccccccccc
Confidence 55432222 235677889988 78887665 567799999999876655432211111111
Q ss_pred -------eee--ccccccee-eeeeee--cCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEe----cCCCeEEEE
Q 017194 257 -------QST--SKVNIRDA-EMEILD--QSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISG----GNDKLVKVW 320 (375)
Q Consensus 257 -------~~~--s~~g~~~~-~~~~~~--~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~----~~dg~i~iw 320 (375)
..+ ...+.... ..+.-. ......++.+.++.....+ .-+..+ |+++++.+. ...+.|.++
T Consensus 224 ~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~g-lFi~th---P~s~~vwvd~~~~~~~~~v~vi 299 (369)
T PF02239_consen 224 FPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGG-LFIKTH---PDSRYVWVDTFLNPDADTVQVI 299 (369)
T ss_dssp EEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS---EE-----TT-SEEEEE-TT-SSHT-EEEE
T ss_pred ccCCCcceEEeeccccceecccccCCccccchhhcCeEEEEEECCCCc-ceeecC---CCCccEEeeccCCCCCceEEEE
Confidence 112 22222221 112111 1234556667777766666 667778 999999987 456899999
Q ss_pred eCCCceeeeecchhhhhhhhc-ccccceeeeeecCCCCCcEEEee--CCCeEEEEec
Q 017194 321 DCSRFQGVQTSINNDLLIKNI-NLNKKVNWLCTTPTESENLVVCD--TSKVVKVYSI 374 (375)
Q Consensus 321 d~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~s~~--~dg~v~iw~~ 374 (375)
|.++.+. ...+. +-...+..+.|++ +|+.+..+. .++.|.+||-
T Consensus 300 D~~tl~~---------~~~i~~~~~~~~~h~ef~~-dG~~v~vS~~~~~~~i~v~D~ 346 (369)
T PF02239_consen 300 DKKTLKV---------VKTITPGPGKRVVHMEFNP-DGKEVWVSVWDGNGAIVVYDA 346 (369)
T ss_dssp ECCGTEE---------EE-HHHHHT--EEEEEE-T-TSSEEEEEEE--TTEEEEEET
T ss_pred ECcCcce---------eEEEeccCCCcEeccEECC-CCCEEEEEEecCCCEEEEEEC
Confidence 9999842 22222 2223588999999 888665544 3447999984
No 198
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.85 E-value=4.4e-20 Score=145.98 Aligned_cols=198 Identities=15% Similarity=0.173 Sum_probs=158.0
Q ss_pred eEEEEecCCCCEEEEeCCCCcEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEEcCCCeEEEEECCCCCccccccc
Q 017194 19 TCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLES 98 (375)
Q Consensus 19 ~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~ 98 (375)
.+++|+++ +..|++++.||++|||++.+...+.....|...|.++.|+|||+.|++.+.| ..+||+.+++..+.....
T Consensus 148 k~vaf~~~-gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~ 225 (398)
T KOG0771|consen 148 KVVAFNGD-GSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTP 225 (398)
T ss_pred eEEEEcCC-CCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCC
Confidence 67899999 8999999999999999998888888888899999999999999999999999 999999998855444443
Q ss_pred ccCCCcceeEEEEcCCC---Ce--EEEEeCCCcEEEEeCcCce---eee--eEecCcccceeEEEEeeCCCcEEEEeecC
Q 017194 99 YNYNKEEINQIVCNPKS---SF--LACADDGGDVKIIDIRQHC---LYK--SLRAGHSSICSSVQFIPWKPWEVISGGLD 168 (375)
Q Consensus 99 ~~~~~~~v~~~~~~~~~---~~--l~~~~~dg~i~iwd~~~~~---~~~--~~~~~~~~~v~~~~~~~~~~~~l~~~~~d 168 (375)
.. .+.....+.|+.++ .+ ++....-+.|+.||+...+ .++ +.. .-...|.+++.+++|+ +++.|+.|
T Consensus 226 ~~-k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~-~~~~siSsl~VS~dGk-f~AlGT~d 302 (398)
T KOG0771|consen 226 FS-KDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKI-KRFKSISSLAVSDDGK-FLALGTMD 302 (398)
T ss_pred cc-cchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhh-hccCcceeEEEcCCCc-EEEEeccC
Confidence 22 24567778888876 33 3333345667777664221 111 111 1234799999999999 89999999
Q ss_pred CeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCC
Q 017194 169 SKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIES 239 (375)
Q Consensus 169 ~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 239 (375)
|.|.+++..+.+.++.++-. |...|+.+.|+| +.+.++.-+.+....+..+.-
T Consensus 303 GsVai~~~~~lq~~~~vk~a------------H~~~VT~ltF~P------dsr~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 303 GSVAIYDAKSLQRLQYVKEA------------HLGFVTGLTFSP------DSRYLASVSSDNEAAVTKLAV 355 (398)
T ss_pred CcEEEEEeceeeeeEeehhh------------heeeeeeEEEcC------CcCcccccccCCceeEEEEee
Confidence 99999999988888877755 778999999999 799999999998888887764
No 199
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.85 E-value=4.4e-18 Score=125.22 Aligned_cols=200 Identities=11% Similarity=0.205 Sum_probs=152.1
Q ss_pred CCeeeecCCCceeEEEEecCCCCEEEEeCCCCcEEEEecccCce------ee--Eeeec-----CccEEEEEEeCCCCeE
Q 017194 7 KPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDV------QL--VTDVG-----NGPVTSLCFKSGNEDI 73 (375)
Q Consensus 7 ~~~~l~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~------~~--~~~~~-----~~~v~~l~~~~~~~~l 73 (375)
++...++|+++|+.++|.. .+|++|+. |.|+=|..+.... +. ....| --.|+++-..|..+-+
T Consensus 54 ~iv~eqahdgpiy~~~f~d---~~Lls~gd-G~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi 129 (325)
T KOG0649|consen 54 KIVPEQAHDGPIYYLAFHD---DFLLSGGD-GLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSI 129 (325)
T ss_pred ceeeccccCCCeeeeeeeh---hheeeccC-ceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcE
Confidence 3455689999999999983 47777775 9999998764432 11 11112 2468899999988888
Q ss_pred EEEcCCCeEEEEECCCCCcccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCceeeeeEec--------Cc
Q 017194 74 IYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRA--------GH 145 (375)
Q Consensus 74 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~--------~~ 145 (375)
+.++.|+.++-||+++++ ....+++|...|.++.--.....+++|++||++++||.++++.++.+.. .|
T Consensus 130 ~~AgGD~~~y~~dlE~G~---i~r~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~ 206 (325)
T KOG0649|consen 130 LFAGGDGVIYQVDLEDGR---IQREYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPD 206 (325)
T ss_pred EEecCCeEEEEEEecCCE---EEEEEcCCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcc
Confidence 888899999999999864 4456778999999999866666899999999999999999988877641 11
Q ss_pred -ccceeEEEEeeCCCcEEEEeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEE
Q 017194 146 -SSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICV 224 (375)
Q Consensus 146 -~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~ 224 (375)
...|.+++-+. . -+++ +....+.+|.+++.++...+.+. ..+..+.| ..+.++
T Consensus 207 ~g~wigala~~e--d-WlvC-GgGp~lslwhLrsse~t~vfpip--------------a~v~~v~F--------~~d~vl 260 (325)
T KOG0649|consen 207 WGKWIGALAVNE--D-WLVC-GGGPKLSLWHLRSSESTCVFPIP--------------ARVHLVDF--------VDDCVL 260 (325)
T ss_pred cCceeEEEeccC--c-eEEe-cCCCceeEEeccCCCceEEEecc--------------cceeEeee--------ecceEE
Confidence 22455555443 3 3444 44568999999999999999855 78889999 467788
Q ss_pred EEecCCcEEEEeCCC
Q 017194 225 VAKGDGVVDVINIES 239 (375)
Q Consensus 225 ~~~~dg~i~i~d~~~ 239 (375)
+++..+.+.-|.+..
T Consensus 261 ~~G~g~~v~~~~l~G 275 (325)
T KOG0649|consen 261 IGGEGNHVQSYTLNG 275 (325)
T ss_pred Eeccccceeeeeecc
Confidence 888888899998875
No 200
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.84 E-value=1.5e-17 Score=139.18 Aligned_cols=260 Identities=11% Similarity=0.142 Sum_probs=165.3
Q ss_pred CCeeeecCCCceeEEEEecCCCCEEEEe-CCCCcEEEEeccc-Cce--eeEeeecCccEEEEEEeCCCCeEEEEcC-CCe
Q 017194 7 KPRRLRGHKATATCCIASRDRPGFVASS-GEDGCICWFDLRS-KDV--QLVTDVGNGPVTSLCFKSGNEDIIYVSS-GKE 81 (375)
Q Consensus 7 ~~~~l~~h~~~i~~~~~~~~~~~~l~s~-~~d~~i~iw~~~~-~~~--~~~~~~~~~~v~~l~~~~~~~~l~~~~~-d~~ 81 (375)
.++++. +.+....++++|+ +++|+++ ..++.|.+|++.. ++. ..... .......++|+|+++++++++. ++.
T Consensus 27 ~~~~~~-~~~~~~~l~~spd-~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~-~~~~p~~i~~~~~g~~l~v~~~~~~~ 103 (330)
T PRK11028 27 LLQVVD-VPGQVQPMVISPD-KRHLYVGVRPEFRVLSYRIADDGALTFAAESP-LPGSPTHISTDHQGRFLFSASYNANC 103 (330)
T ss_pred eeeEEe-cCCCCccEEECCC-CCEEEEEECCCCcEEEEEECCCCceEEeeeec-CCCCceEEEECCCCCEEEEEEcCCCe
Confidence 444554 3456778999998 7877655 4578899999873 332 22222 2345678999999998888765 789
Q ss_pred EEEEECCCCC-cccccccccCCCcceeEEEEcCCCCeEEEEe-CCCcEEEEeCcCceeee-----eEecCcccceeEEEE
Q 017194 82 VKSFDVHMPA-SWRPLESYNYNKEEINQIVCNPKSSFLACAD-DGGDVKIIDIRQHCLYK-----SLRAGHSSICSSVQF 154 (375)
Q Consensus 82 i~iwd~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~-----~~~~~~~~~v~~~~~ 154 (375)
|.+|++++.. ....+....+ ......++++|+++++++++ .++.|.+||+.+...+. ............++|
T Consensus 104 v~v~~~~~~g~~~~~~~~~~~-~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~ 182 (330)
T PRK11028 104 VSVSPLDKDGIPVAPIQIIEG-LEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVF 182 (330)
T ss_pred EEEEEECCCCCCCCceeeccC-CCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCCCCCCceEEE
Confidence 9999997432 2222222222 24567788999999886555 56899999997633221 111012344678999
Q ss_pred eeCCCcEEEEee-cCCeEEEeeCCC--CCc--ceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEec-
Q 017194 155 IPWKPWEVISGG-LDSKLVMWDFSK--GRP--NKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKG- 228 (375)
Q Consensus 155 ~~~~~~~l~~~~-~d~~i~~wd~~~--~~~--~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~- 228 (375)
+|+++ +++++. .+++|.+||++. ++. +..+... |.. ...+.....+.++| ++++++++..
T Consensus 183 ~pdg~-~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~-p~~------~~~~~~~~~i~~~p------dg~~lyv~~~~ 248 (330)
T PRK11028 183 HPNQQ-YAYCVNELNSSVDVWQLKDPHGEIECVQTLDMM-PAD------FSDTRWAADIHITP------DGRHLYACDRT 248 (330)
T ss_pred CCCCC-EEEEEecCCCEEEEEEEeCCCCCEEEEEEEecC-CCc------CCCCccceeEEECC------CCCEEEEecCC
Confidence 99999 455554 489999999974 222 2222211 000 00122334688888 7999998864
Q ss_pred CCcEEEEeCCCcceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEE
Q 017194 229 DGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYL 308 (375)
Q Consensus 229 dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l 308 (375)
++.|.+|++..... .......... ......+.++ |+|++|
T Consensus 249 ~~~I~v~~i~~~~~------------------------------------~~~~~~~~~~-~~~p~~~~~~---~dg~~l 288 (330)
T PRK11028 249 ASLISVFSVSEDGS------------------------------------VLSFEGHQPT-ETQPRGFNID---HSGKYL 288 (330)
T ss_pred CCeEEEEEEeCCCC------------------------------------eEEEeEEEec-cccCCceEEC---CCCCEE
Confidence 78999999864211 1111112111 1234567899 999999
Q ss_pred EEecC-CCeEEEEeCCC
Q 017194 309 ISGGN-DKLVKVWDCSR 324 (375)
Q Consensus 309 ~s~~~-dg~i~iwd~~~ 324 (375)
+++.. +++|.+|+++.
T Consensus 289 ~va~~~~~~v~v~~~~~ 305 (330)
T PRK11028 289 IAAGQKSHHISVYEIDG 305 (330)
T ss_pred EEEEccCCcEEEEEEcC
Confidence 97765 89999998753
No 201
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.84 E-value=3.6e-21 Score=164.32 Aligned_cols=245 Identities=18% Similarity=0.214 Sum_probs=191.5
Q ss_pred ceeeEeeecCccEEEEEEeCCCCeEEEEcCCCeEEEEECCCCCcccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEE
Q 017194 49 DVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVK 128 (375)
Q Consensus 49 ~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 128 (375)
+.++.+.+|...|+|..|...|.++++|+.|..++||..+++ ..+....+|.+.|+.++.+.++.++++++.|..|+
T Consensus 181 k~ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~---~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIr 257 (1113)
T KOG0644|consen 181 KNIKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETA---RCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIR 257 (1113)
T ss_pred HHHHHHHhhhhheeeeeeccccceEeecCccceeeeeeccch---hhhccCCCCccccchhccchhhhhhhhcccCceEE
Confidence 346667789999999999999999999999999999998864 56677888999999999999999999999999999
Q ss_pred EEeCcCceeeeeEecCcccceeEEEEeeCCCcEEEEeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEE
Q 017194 129 IIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAI 208 (375)
Q Consensus 129 iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 208 (375)
+|.+.++.++..+. +|++.|++++|+|- .+.+.||++++||.+ ..+.... +.|. ... ....+.++
T Consensus 258 vWrl~~~~pvsvLr-ghtgavtaiafsP~-----~sss~dgt~~~wd~r-~~~~~y~--prp~-~~~-----~~~~~~s~ 322 (1113)
T KOG0644|consen 258 VWRLPDGAPVSVLR-GHTGAVTAIAFSPR-----ASSSDDGTCRIWDAR-LEPRIYV--PRPL-KFT-----EKDLVDSI 322 (1113)
T ss_pred EEecCCCchHHHHh-ccccceeeeccCcc-----ccCCCCCceEecccc-ccccccC--CCCC-Ccc-----cccceeee
Confidence 99999999999999 99999999999985 377899999999998 1111111 1000 000 12345566
Q ss_pred eecCCccccCCCCEEEEEecCCcEEEEeCCCcceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecC
Q 017194 209 AIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGG 288 (375)
Q Consensus 209 ~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (375)
.|.. ++..+++++.|+.-..|.+.. +..
T Consensus 323 ~~~~------~~~~f~Tgs~d~ea~n~e~~~----------------------------------------------l~~ 350 (1113)
T KOG0644|consen 323 LFEN------NGDRFLTGSRDGEARNHEFEQ----------------------------------------------LAW 350 (1113)
T ss_pred eccc------cccccccccCCcccccchhhH----------------------------------------------hhh
Confidence 6655 678888999988887777663 111
Q ss_pred CCccEEEEEEeecCCCCcEEEEecCCCeEEEEeCCCceeeeecchhhhhhhhcccccceeeeeecCCCCCcEEEeeCCCe
Q 017194 289 HTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKV 368 (375)
Q Consensus 289 ~~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~ 368 (375)
+...+.-+.++. .-..+.+++-.+..+++|++.++ .++..+.+|...+..+.++|.+.....+++.||.
T Consensus 351 ~~~~lif~t~ss--d~~~~~~~ar~~~~~~vwnl~~g---------~l~H~l~ghsd~~yvLd~Hpfn~ri~msag~dgs 419 (1113)
T KOG0644|consen 351 RSNLLIFVTRSS--DLSSIVVTARNDHRLCVWNLYTG---------QLLHNLMGHSDEVYVLDVHPFNPRIAMSAGYDGS 419 (1113)
T ss_pred hccceEEEeccc--cccccceeeeeeeEeeeeecccc---------hhhhhhcccccceeeeeecCCCcHhhhhccCCCc
Confidence 222222122220 11246677777889999999999 7778889999999999999999888999999999
Q ss_pred EEEEec
Q 017194 369 VKVYSI 374 (375)
Q Consensus 369 v~iw~~ 374 (375)
..|||+
T Consensus 420 t~iwdi 425 (1113)
T KOG0644|consen 420 TIIWDI 425 (1113)
T ss_pred eEeeec
Confidence 999996
No 202
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.84 E-value=3.4e-19 Score=153.54 Aligned_cols=236 Identities=15% Similarity=0.142 Sum_probs=162.6
Q ss_pred CCcEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEEcCC---CeEEEEECCCCCcccccccccCCCcceeEEEEcC
Q 017194 37 DGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSG---KEVKSFDVHMPASWRPLESYNYNKEEINQIVCNP 113 (375)
Q Consensus 37 d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d---~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~ 113 (375)
+..|.+||..... .+.+..|...+...+|+|+|+.|+.++.+ ..|++||+.+++. ..+..+.+ ....++|+|
T Consensus 183 ~~~i~i~d~dg~~-~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~-~~l~~~~g---~~~~~~wSP 257 (429)
T PRK01742 183 PYEVRVADYDGFN-QFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGAR-KVVASFRG---HNGAPAFSP 257 (429)
T ss_pred eEEEEEECCCCCC-ceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCce-EEEecCCC---ccCceeECC
Confidence 4689999986544 56677788889999999999999988754 3799999987643 23343433 344689999
Q ss_pred CCCeEEEEe-CCCcEEEE--eCcCceeeeeEecCcccceeEEEEeeCCCcEEEEeecCCeEEEeeCCCCCcceEEecCCC
Q 017194 114 KSSFLACAD-DGGDVKII--DIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLP 190 (375)
Q Consensus 114 ~~~~l~~~~-~dg~i~iw--d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~ 190 (375)
||+.|+.+. .+|.+.|| |+.+++. ..+. .+...+....|+|+|+.+++++..++...+|+++......... .
T Consensus 258 DG~~La~~~~~~g~~~Iy~~d~~~~~~-~~lt-~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l-~-- 332 (429)
T PRK01742 258 DGSRLAFASSKDGVLNIYVMGANGGTP-SQLT-SGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV-G-- 332 (429)
T ss_pred CCCEEEEEEecCCcEEEEEEECCCCCe-Eeec-cCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe-c--
Confidence 999888765 67765554 6655543 4555 5667788999999998545555567888888875432222221 1
Q ss_pred CCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCcceeecccccCCCCCCceeecccccceeeee
Q 017194 191 ENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEME 270 (375)
Q Consensus 191 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~ 270 (375)
+.. ....|+| +++.++..+.++ +.+||+.++...
T Consensus 333 ----------~~~--~~~~~Sp------DG~~ia~~~~~~-i~~~Dl~~g~~~--------------------------- 366 (429)
T PRK01742 333 ----------GRG--YSAQISA------DGKTLVMINGDN-VVKQDLTSGSTE--------------------------- 366 (429)
T ss_pred ----------CCC--CCccCCC------CCCEEEEEcCCC-EEEEECCCCCeE---------------------------
Confidence 111 3467888 899998887764 666998864211
Q ss_pred eeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEecCCCeEEEEeCC--Cceeeeecchhhhhhhhccccccee
Q 017194 271 ILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCS--RFQGVQTSINNDLLIKNINLNKKVN 348 (375)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd~~--~~~~~~~~~~~~~~~~~~~~~~~v~ 348 (375)
.+..+ .....+.|+ |||++|+.++.++.+.+|.+. ++ ...+.+..|.+.+.
T Consensus 367 --------------~lt~~-~~~~~~~~s---PdG~~i~~~s~~g~~~~l~~~~~~G---------~~~~~l~~~~g~~~ 419 (429)
T PRK01742 367 --------------VLSST-FLDESPSIS---PNGIMIIYSSTQGLGKVLQLVSADG---------RFKARLPGSDGQVK 419 (429)
T ss_pred --------------EecCC-CCCCCceEC---CCCCEEEEEEcCCCceEEEEEECCC---------CceEEccCCCCCCC
Confidence 01000 112456789 999999999999988888763 33 44556667888889
Q ss_pred eeeecCC
Q 017194 349 WLCTTPT 355 (375)
Q Consensus 349 ~~~~~~~ 355 (375)
..+|+|.
T Consensus 420 ~p~wsp~ 426 (429)
T PRK01742 420 FPAWSPY 426 (429)
T ss_pred CcccCCC
Confidence 9999983
No 203
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.83 E-value=9.7e-19 Score=153.40 Aligned_cols=250 Identities=15% Similarity=0.209 Sum_probs=181.5
Q ss_pred ccEEEEEEeCCCCeEEEEcCCCeEEEEECCCCCcccccccccCCCcceeEEEEcC--CCCeEEEEeCCCcEEEEeCc---
Q 017194 59 GPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNP--KSSFLACADDGGDVKIIDIR--- 133 (375)
Q Consensus 59 ~~v~~l~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~iwd~~--- 133 (375)
.+-..+.|+|-...++++...-.|++||.+.++....+..-......|+.+.+-. |..++++++.||.|+||+--
T Consensus 1065 ~~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~ 1144 (1387)
T KOG1517|consen 1065 QPPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADK 1144 (1387)
T ss_pred CCCceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEecccccc
Confidence 3566788899888899888778999999998776666555445567889988865 45679999999999999743
Q ss_pred --CceeeeeEec------CcccceeEEEEeeCCCcEEEEeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCce
Q 017194 134 --QHCLYKSLRA------GHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFV 205 (375)
Q Consensus 134 --~~~~~~~~~~------~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 205 (375)
+.+.+..+.. +..+.-.-+.|..... .|++++.-..|+|||.........+..+ ....+
T Consensus 1145 ~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G-~Ll~tGd~r~IRIWDa~~E~~~~diP~~------------s~t~v 1211 (1387)
T KOG1517|consen 1145 WKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSG-HLLVTGDVRSIRIWDAHKEQVVADIPYG------------SSTLV 1211 (1387)
T ss_pred cCCceeEEeeccccccCccCCCCCeeeehhhhCC-eEEecCCeeEEEEEecccceeEeecccC------------CCccc
Confidence 2233333320 1111113456777766 5677666889999999988888877766 45667
Q ss_pred eEEeecCCccccCCCCEEEEEecCCcEEEEeCCCcceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeee
Q 017194 206 HAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYS 285 (375)
Q Consensus 206 ~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~ 285 (375)
+++.-+.. .|+.+++|..||.|++||.+..... ..+..
T Consensus 1212 TaLS~~~~-----~gn~i~AGfaDGsvRvyD~R~a~~d-------------------------------------s~v~~ 1249 (1387)
T KOG1517|consen 1212 TALSADLV-----HGNIIAAGFADGSVRVYDRRMAPPD-------------------------------------SLVCV 1249 (1387)
T ss_pred eeeccccc-----CCceEEEeecCCceEEeecccCCcc-------------------------------------cccee
Confidence 77776653 6899999999999999999974211 23445
Q ss_pred ecCCCcc--EEEEEEeecCCCCc-EEEEecCCCeEEEEeCCCceeeeecchhhhhhhhccc---ccceeeeeecCCCCCc
Q 017194 286 VGGHTAA--ASCVAFSMFGERGK-YLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINL---NKKVNWLCTTPTESEN 359 (375)
Q Consensus 286 ~~~~~~~--v~~~~~s~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~---~~~v~~~~~~~~~~~~ 359 (375)
.+.|+.. |..+.+- +.|- .|++|+.||.|++||++.... +-......| .+..+++..++ ....
T Consensus 1250 ~R~h~~~~~Iv~~slq---~~G~~elvSgs~~G~I~~~DlR~~~~-------e~~~~iv~~~~yGs~lTal~VH~-hapi 1318 (1387)
T KOG1517|consen 1250 YREHNDVEPIVHLSLQ---RQGLGELVSGSQDGDIQLLDLRMSSK-------ETFLTIVAHWEYGSALTALTVHE-HAPI 1318 (1387)
T ss_pred ecccCCcccceeEEee---cCCCcceeeeccCCeEEEEecccCcc-------cccceeeeccccCccceeeeecc-CCCe
Confidence 6667666 9999987 6554 499999999999999998421 111122222 23589999998 7788
Q ss_pred EEEeeCCCeEEEEecC
Q 017194 360 LVVCDTSKVVKVYSIS 375 (375)
Q Consensus 360 l~s~~~dg~v~iw~~~ 375 (375)
+|+|+. +.|+||++.
T Consensus 1319 iAsGs~-q~ikIy~~~ 1333 (1387)
T KOG1517|consen 1319 IASGSA-QLIKIYSLS 1333 (1387)
T ss_pred eeecCc-ceEEEEecC
Confidence 999988 999999974
No 204
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.83 E-value=6.4e-18 Score=131.62 Aligned_cols=233 Identities=18% Similarity=0.169 Sum_probs=171.3
Q ss_pred CcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCceeeeeEecCcccceeEEEEeeCCCcEEEEeecC--CeEEEeeCCCCC
Q 017194 103 KEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLD--SKLVMWDFSKGR 180 (375)
Q Consensus 103 ~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d--~~i~~wd~~~~~ 180 (375)
...+..+.|+.+...|..|+.|| .++|............ .....|-.+-|+.. +++..+.+ ..+++++++.+.
T Consensus 5 ~~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k~~~~~-~~~~~IvEmLFSSS---LvaiV~~~qpr~Lkv~~~Kk~~ 79 (391)
T KOG2110|consen 5 KPTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEKCFSKD-TEGVSIVEMLFSSS---LVAIVSIKQPRKLKVVHFKKKT 79 (391)
T ss_pred CcceeeeeeccceeEEEccCCCc-eeEEecCchHHhhccc-CCCeEEEEeecccc---eeEEEecCCCceEEEEEcccCc
Confidence 34567777999998999999887 6788776543322222 23345556667654 55555543 459999999888
Q ss_pred cceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCcceeecccccCCCCCCce--e
Q 017194 181 PNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQ--S 258 (375)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~--~ 258 (375)
.+..+.+. ..|.++.++ .+.|++.-.+ .|+|||+++.+........+..+.... +
T Consensus 80 ~ICe~~fp--------------t~IL~VrmN--------r~RLvV~Lee-~IyIydI~~MklLhTI~t~~~n~~gl~AlS 136 (391)
T KOG2110|consen 80 TICEIFFP--------------TSILAVRMN--------RKRLVVCLEE-SIYIYDIKDMKLLHTIETTPPNPKGLCALS 136 (391)
T ss_pred eEEEEecC--------------CceEEEEEc--------cceEEEEEcc-cEEEEecccceeehhhhccCCCccceEeec
Confidence 88888755 789999995 5566665555 499999999888777665544444444 4
Q ss_pred ecccccceeee-----eeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEecCCCe-EEEEeCCCceeeeecc
Q 017194 259 TSKVNIRDAEM-----EILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKL-VKVWDCSRFQGVQTSI 332 (375)
Q Consensus 259 ~s~~g~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~dg~-i~iwd~~~~~~~~~~~ 332 (375)
++..+.++++- |.....+....+.+..+..|.+++.+++|+ ++|.+|||+++.|+ |||+.+.+++...+.
T Consensus 137 ~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs---~~G~llATASeKGTVIRVf~v~~G~kl~eF- 212 (391)
T KOG2110|consen 137 PNNANCYLAYPGSTTSGDVVLFDTINLQPVNTINAHKGPLAALAFS---PDGTLLATASEKGTVIRVFSVPEGQKLYEF- 212 (391)
T ss_pred cCCCCceEEecCCCCCceEEEEEcccceeeeEEEecCCceeEEEEC---CCCCEEEEeccCceEEEEEEcCCccEeeee-
Confidence 45555688873 334444556677788889999999999999 99999999999987 799999999644211
Q ss_pred hhhhhhhhcc-cccceeeeeecCCCCCcEEEeeCCCeEEEEecC
Q 017194 333 NNDLLIKNIN-LNKKVNWLCTTPTESENLVVCDTSKVVKVYSIS 375 (375)
Q Consensus 333 ~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~s~~~dg~v~iw~~~ 375 (375)
..| ....|.+++|+| ++++|++.+..++|.++.++
T Consensus 213 -------RRG~~~~~IySL~Fs~-ds~~L~~sS~TeTVHiFKL~ 248 (391)
T KOG2110|consen 213 -------RRGTYPVSIYSLSFSP-DSQFLAASSNTETVHIFKLE 248 (391)
T ss_pred -------eCCceeeEEEEEEECC-CCCeEEEecCCCeEEEEEec
Confidence 111 246789999999 99999999999999999874
No 205
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.83 E-value=5.5e-19 Score=144.04 Aligned_cols=172 Identities=15% Similarity=0.202 Sum_probs=138.9
Q ss_pred CEEEEeCCCCcEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEEcCCCeEEEEECCCCCcccccccccCCCcceeE
Q 017194 29 GFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQ 108 (375)
Q Consensus 29 ~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~ 108 (375)
..++.++.||.+.|.+ ..++....+.+|.+.+.+-.|+|+|.-|++++.||.|++|.-.. -....+.. ...+|.|
T Consensus 76 d~~~i~s~DGkf~il~-k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsG-MLRStl~Q---~~~~v~c 150 (737)
T KOG1524|consen 76 DTLLICSNDGRFVILN-KSARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSG-MLRSTVVQ---NEESIRC 150 (737)
T ss_pred ceEEEEcCCceEEEec-ccchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEeccc-hHHHHHhh---cCceeEE
Confidence 4688889999999988 45777788899999999999999999999999999999999652 11122222 2678999
Q ss_pred EEEcCCCCeEEEEeCCCcEEEEeCcCceeeeeEecCcccceeEEEEeeCCCcEEEEeecCCeEEEeeCCCCCcceEEecC
Q 017194 109 IVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFG 188 (375)
Q Consensus 109 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~ 188 (375)
++|.|+.+.++.+. .+.+.|=.+.....+..++ .|.+-|.++.|++..+ ++++|++|-..++||-. |..+..-..
T Consensus 151 ~~W~p~S~~vl~c~-g~h~~IKpL~~n~k~i~Wk-AHDGiiL~~~W~~~s~-lI~sgGED~kfKvWD~~-G~~Lf~S~~- 225 (737)
T KOG1524|consen 151 ARWAPNSNSIVFCQ-GGHISIKPLAANSKIIRWR-AHDGLVLSLSWSTQSN-IIASGGEDFRFKIWDAQ-GANLFTSAA- 225 (737)
T ss_pred EEECCCCCceEEec-CCeEEEeecccccceeEEe-ccCcEEEEeecCcccc-ceeecCCceeEEeeccc-CcccccCCh-
Confidence 99999987776663 4678787777777777888 9999999999999998 89999999999999965 555544332
Q ss_pred CCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecC
Q 017194 189 LPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGD 229 (375)
Q Consensus 189 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~d 229 (375)
|..+|++++|.| + +.+++++..
T Consensus 226 ------------~ey~ITSva~np------d-~~~~v~S~n 247 (737)
T KOG1524|consen 226 ------------EEYAITSVAFNP------E-KDYLLWSYN 247 (737)
T ss_pred ------------hccceeeeeecc------c-cceeeeeee
Confidence 578999999999 5 677776654
No 206
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.83 E-value=1.8e-20 Score=149.87 Aligned_cols=232 Identities=16% Similarity=0.228 Sum_probs=187.4
Q ss_pred CccEEEEEEeCCCCeEEEEcCCCeEEEEECCCCCcccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCcee
Q 017194 58 NGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCL 137 (375)
Q Consensus 58 ~~~v~~l~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 137 (375)
......+.++.+|++|+.++..|.|-.+|..+.+....+.. ...|.++.|..+.+++|++ ....++||| ..|..
T Consensus 129 eFGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v----~Etv~Dv~~LHneq~~AVA-QK~y~yvYD-~~GtE 202 (545)
T KOG1272|consen 129 EFGPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINV----METVRDVTFLHNEQFFAVA-QKKYVYVYD-NNGTE 202 (545)
T ss_pred ccCCeeeeecCCccEEEecCCccceeeeecccceeeeeeeh----hhhhhhhhhhcchHHHHhh-hhceEEEec-CCCcE
Confidence 45567899999999999999999999999998765544444 4679999999999899888 557899999 46777
Q ss_pred eeeEecCcccceeEEEEeeCCCcEEEEeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCcccc
Q 017194 138 YKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLD 217 (375)
Q Consensus 138 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 217 (375)
+..++ . ...|..+.|.|..- +|++++..|.++.-|+..|+.+..+..+ .+.+..+.-+|
T Consensus 203 lHClk-~-~~~v~rLeFLPyHf-LL~~~~~~G~L~Y~DVS~GklVa~~~t~-------------~G~~~vm~qNP----- 261 (545)
T KOG1272|consen 203 LHCLK-R-HIRVARLEFLPYHF-LLVAASEAGFLKYQDVSTGKLVASIRTG-------------AGRTDVMKQNP----- 261 (545)
T ss_pred Eeehh-h-cCchhhhcccchhh-eeeecccCCceEEEeechhhhhHHHHcc-------------CCccchhhcCC-----
Confidence 88887 4 46899999999875 8899999999999999999999888765 56788888888
Q ss_pred CCCCEEEEEecCCcEEEEeCCCcceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEE
Q 017194 218 KTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVA 297 (375)
Q Consensus 218 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 297 (375)
-+..+-+|...|+|.+|..... .++..+-.|.++|.+++
T Consensus 262 -~NaVih~GhsnGtVSlWSP~sk----------------------------------------ePLvKiLcH~g~V~siA 300 (545)
T KOG1272|consen 262 -YNAVIHLGHSNGTVSLWSPNSK----------------------------------------EPLVKILCHRGPVSSIA 300 (545)
T ss_pred -ccceEEEcCCCceEEecCCCCc----------------------------------------chHHHHHhcCCCcceEE
Confidence 5888999999999999998864 34456778999999999
Q ss_pred EeecCCCCcEEEEecCCCeEEEEeCCCceeeeecchhhhhhhhcccccceeeeeecCCCCCcEEEeeCCCeEEEEe
Q 017194 298 FSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYS 373 (375)
Q Consensus 298 ~s~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~iw~ 373 (375)
+. ++|+|+||.+.|..++|||++... .+..... .-+...+++|. .| +++++....|.||.
T Consensus 301 v~---~~G~YMaTtG~Dr~~kIWDlR~~~---------ql~t~~t-p~~a~~ls~Sq-kg--lLA~~~G~~v~iw~ 360 (545)
T KOG1272|consen 301 VD---RGGRYMATTGLDRKVKIWDLRNFY---------QLHTYRT-PHPASNLSLSQ-KG--LLALSYGDHVQIWK 360 (545)
T ss_pred EC---CCCcEEeecccccceeEeeecccc---------ccceeec-CCCcccccccc-cc--ceeeecCCeeeeeh
Confidence 99 999999999999999999999974 2222222 34556667765 33 44444555688884
No 207
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.83 E-value=5.8e-18 Score=129.43 Aligned_cols=225 Identities=14% Similarity=0.111 Sum_probs=173.8
Q ss_pred cCccEEEEEEeCCCCeEEEEcCCCeEEEEECCCCCcccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcC-c
Q 017194 57 GNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQ-H 135 (375)
Q Consensus 57 ~~~~v~~l~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~ 135 (375)
-..+|+|.+|++|+..++.+.....|.||.......++...++..|...|+.++|+|..+.|++++.|..-++|.... +
T Consensus 9 ~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~ 88 (361)
T KOG1523|consen 9 LLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGG 88 (361)
T ss_pred ccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCC
Confidence 457999999999999999999999999999987777889999999999999999999999999999999999999843 3
Q ss_pred --eeeeeEecCcccceeEEEEeeCCCcEEEEeecCCeEEEeeCCCCCcc---eEEecCCCCCCCCCCcccCCCceeEEee
Q 017194 136 --CLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPN---KIVNFGLPENNGNAGQCYNPAFVHAIAI 210 (375)
Q Consensus 136 --~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 210 (375)
+..-.+. .++..++++.|+|.++ .|++|+....|.+|-++....- +.++.+ ....|.++.|
T Consensus 89 ~WkptlvLl-RiNrAAt~V~WsP~en-kFAVgSgar~isVcy~E~ENdWWVsKhikkP------------irStv~sldW 154 (361)
T KOG1523|consen 89 TWKPTLVLL-RINRAATCVKWSPKEN-KFAVGSGARLISVCYYEQENDWWVSKHIKKP------------IRSTVTSLDW 154 (361)
T ss_pred eeccceeEE-EeccceeeEeecCcCc-eEEeccCccEEEEEEEecccceehhhhhCCc------------cccceeeeec
Confidence 3333344 5888999999999998 7999999999999987754322 112111 3467999999
Q ss_pred cCCccccCCCCEEEEEecCCcEEEEeCCCcceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCC
Q 017194 211 PDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHT 290 (375)
Q Consensus 211 ~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (375)
+| ++-+|++|+.|+..++|...-.....+. +-+|=|..+ .-.+++.++....
T Consensus 155 hp------nnVLlaaGs~D~k~rVfSayIK~Vdekp-----------ap~pWgsk~-----------PFG~lm~E~~~~g 206 (361)
T KOG1523|consen 155 HP------NNVLLAAGSTDGKCRVFSAYIKGVDEKP-----------APTPWGSKM-----------PFGQLMSEASSSG 206 (361)
T ss_pred cC------CcceecccccCcceeEEEEeeeccccCC-----------CCCCCccCC-----------cHHHHHHhhccCC
Confidence 99 8999999999999999976522111110 001111100 0112233444557
Q ss_pred ccEEEEEEeecCCCCcEEEEecCCCeEEEEeCCCce
Q 017194 291 AAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQ 326 (375)
Q Consensus 291 ~~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd~~~~~ 326 (375)
+.+..+.|+ |+|..|+-.+.|..+.+=|.....
T Consensus 207 gwvh~v~fs---~sG~~lawv~Hds~v~~~da~~p~ 239 (361)
T KOG1523|consen 207 GWVHGVLFS---PSGNRLAWVGHDSTVSFVDAAGPS 239 (361)
T ss_pred CceeeeEeC---CCCCEeeEecCCCceEEeecCCCc
Confidence 889999999 999999999999999999988763
No 208
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.82 E-value=1.4e-17 Score=129.41 Aligned_cols=306 Identities=12% Similarity=0.075 Sum_probs=191.0
Q ss_pred CceeEEEEecCCCCEEEEeCCCCcEEEEecccCceeeEeee-cCccEEEEEEeCCCCeEEEEcCCCeEEEEECCCCCcc-
Q 017194 16 ATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDV-GNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASW- 93 (375)
Q Consensus 16 ~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~-~~~~v~~l~~~~~~~~l~~~~~d~~i~iwd~~~~~~~- 93 (375)
-.+.-++|++. -..+|++..|-+|++|+-.. ++...++. ....|++++|-|.+..-++.+..+-|.+|.....-..
T Consensus 99 ~dlr~~aWhqH-~~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgCr~gIciW~~s~tln~~ 176 (445)
T KOG2139|consen 99 IDLRGVAWHQH-IIAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGCRAGICIWSDSRTLNAN 176 (445)
T ss_pred cceeeEeechh-hhhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeeecceeEEEEcCcccccc
Confidence 34667899987 56788999999999999776 44444442 3678999999997655444444677999986531111
Q ss_pred ----------cccccccCCCcceeEEEEcCCCCeEEEEe-CCCcEEEEeCcCceeeeeEecCcccceeEEEEeeCCCcEE
Q 017194 94 ----------RPLESYNYNKEEINQIVCNPKSSFLACAD-DGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEV 162 (375)
Q Consensus 94 ----------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l 162 (375)
..+....+| .+|+++.|.+||..+++++ .|..|.|||..++..+.... .-.+.+.-+.|+||+. .|
T Consensus 177 r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~-~glgg~slLkwSPdgd-~l 253 (445)
T KOG2139|consen 177 RNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIP-KGLGGFSLLKWSPDGD-VL 253 (445)
T ss_pred cccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccc-cCCCceeeEEEcCCCC-EE
Confidence 112223444 6899999999999999887 57789999999887665543 3456788999999999 68
Q ss_pred EEeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCcce
Q 017194 163 ISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELN 242 (375)
Q Consensus 163 ~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~ 242 (375)
+.++-|+..++|......-......+ ++.|..-.|+| .|++|..++. |.-++|.+.-..+
T Consensus 254 faAt~davfrlw~e~q~wt~erw~lg-------------sgrvqtacWsp------cGsfLLf~~s-gsp~lysl~f~~~ 313 (445)
T KOG2139|consen 254 FAATCDAVFRLWQENQSWTKERWILG-------------SGRVQTACWSP------CGSFLLFACS-GSPRLYSLTFDGE 313 (445)
T ss_pred EEecccceeeeehhcccceecceecc-------------CCceeeeeecC------CCCEEEEEEc-CCceEEEEeecCC
Confidence 89999999999976544333333333 46899999999 6777665543 3445555543221
Q ss_pred eecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecC---CCccEEEEEEeecCCCCcEEEEecCC-----
Q 017194 243 ISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGG---HTAAASCVAFSMFGERGKYLISGGND----- 314 (375)
Q Consensus 243 ~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~v~~~~~s~~~~~~~~l~s~~~d----- 314 (375)
...... |.+..-+ .....++.+....+ -.+++.+++|. |.|.+||+.-..
T Consensus 314 ~~~~~~------------~~~~k~~-------lliaDL~e~ti~ag~~l~cgeaq~lawD---psGeyLav~fKg~~~v~ 371 (445)
T KOG2139|consen 314 DSVFLR------------PQSIKRV-------LLIADLQEVTICAGQRLCCGEAQCLAWD---PSGEYLAVIFKGQSFVL 371 (445)
T ss_pred CccccC------------cccceee-------eeeccchhhhhhcCcccccCccceeeEC---CCCCEEEEEEcCCchhh
Confidence 111110 0000000 00000000111111 14678999999 999999986543
Q ss_pred ---CeEEEEeCCCceeeeecchhhhhhhhcccccceeeeeecC--CCCCcEEEeeCCCeEEEEec
Q 017194 315 ---KLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTP--TESENLVVCDTSKVVKVYSI 374 (375)
Q Consensus 315 ---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~l~s~~~dg~v~iw~~ 374 (375)
..|.+||.......... ......+. ....++|.| .++.+|..+-..|.+.-|.+
T Consensus 372 ~~k~~i~~fdtr~sp~vels----~cg~i~ge--~P~~IsF~pl~n~g~lLsiaWsTGriq~ypl 430 (445)
T KOG2139|consen 372 LCKLHISRFDTRKSPPVELS----YCGMIGGE--YPAYISFGPLKNEGRLLSIAWSTGRIQRYPL 430 (445)
T ss_pred hhhhhhhhhcccccCceEEE----ecccccCC--CCceEEeeecccCCcEEEEEeccCceEeeee
Confidence 34777887765221100 00111111 133455554 45666777777787776654
No 209
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.82 E-value=3.1e-19 Score=145.94 Aligned_cols=247 Identities=12% Similarity=0.103 Sum_probs=165.6
Q ss_pred eeeEeeecCccEEEEEEeCCCCeEEEEcCCCeEEEEECCCCCcccccccccCCCcceeEEEEcC--CCCeEEEEeCCCcE
Q 017194 50 VQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNP--KSSFLACADDGGDV 127 (375)
Q Consensus 50 ~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i 127 (375)
+.+.+.+|.+.|+++.|+.+|.+|++|+.|-.+.|||.-..+.+..+ ..+|...|.++.|-| +.+.+++|..|..|
T Consensus 42 lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI--~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i 119 (758)
T KOG1310|consen 42 LEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSI--STGHTANIFSVKFVPYTNNRIVLSGAGDKLI 119 (758)
T ss_pred hhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeee--ecccccceeEEeeeccCCCeEEEeccCcceE
Confidence 35678899999999999999999999999999999998754333333 357899999999999 46789999999999
Q ss_pred EEEeCcCc----------eeeeeEecCcccceeEEEEeeCCCcEEEEeecCCeEEEeeCCCCCcceEEe-cCCCCCCCCC
Q 017194 128 KIIDIRQH----------CLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVN-FGLPENNGNA 196 (375)
Q Consensus 128 ~iwd~~~~----------~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~-~~~~~~~~~~ 196 (375)
+++|+... +....+. .|...|..++-.|+++..+.++++||+++-+|++.......-. .+ ..-.
T Consensus 120 ~lfdl~~~~~~~~d~~~~~~~~~~~-cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~----~~l~ 194 (758)
T KOG1310|consen 120 KLFDLDSSKEGGMDHGMEETTRCWS-CHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCP----SILV 194 (758)
T ss_pred EEEecccccccccccCccchhhhhh-hhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCcccccc----HHHH
Confidence 99999842 2344455 7889999999999998799999999999999998643211100 00 0000
Q ss_pred CcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCcceeeccc----ccCCCCCCce-eecccccceeeeee
Q 017194 197 GQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSK----STTKPLKGSQ-STSKVNIRDAEMEI 271 (375)
Q Consensus 197 ~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~----~~~~~~~~~~-~~s~~g~~~~~~~~ 271 (375)
..+..--...++.++|. +..+|++|+.|-..++||.+......... ..+.....++ .|+|.+...
T Consensus 195 ny~~~lielk~ltisp~-----rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn----- 264 (758)
T KOG1310|consen 195 NYNPQLIELKCLTISPS-----RPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKN----- 264 (758)
T ss_pred HhchhhheeeeeeecCC-----CCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccC-----
Confidence 00001134678899986 78899999999999999975432222111 1111111112 233333210
Q ss_pred eecCCcceeEeeeeecC-CCccEEEEEEeecCCCCcEEEEecCCCeEEEEeCCCcee
Q 017194 272 LDQSGGKRLHLDYSVGG-HTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQG 327 (375)
Q Consensus 272 ~~~~~~~~~~~~~~~~~-~~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd~~~~~~ 327 (375)
..+ -...++++.+..|.|+|.-|+..-..-.|+++|+...+.
T Consensus 265 --------------~~gn~~~~~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~~~ 307 (758)
T KOG1310|consen 265 --------------SQGNLDRYITCCTYVTFNPNGTELLVSWGGEHVYLFDVNEDKS 307 (758)
T ss_pred --------------cccccccceeeeEEEEECCCCcEEEEeeCCeEEEEEeecCCCC
Confidence 011 122343333333338987665544445799999988754
No 210
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.82 E-value=2e-18 Score=132.59 Aligned_cols=310 Identities=14% Similarity=0.138 Sum_probs=199.0
Q ss_pred CceeEEEEecCCCCEEEEeCCCCcEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEE-EcCCCeEEEEECCCCCccc
Q 017194 16 ATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIY-VSSGKEVKSFDVHMPASWR 94 (375)
Q Consensus 16 ~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~-~~~d~~i~iwd~~~~~~~~ 94 (375)
+.|.-+.|..|.-..|.....++.|.+|++...+-...++....++.+++|+|+|+.++. ...+-.|.+|.+.+.+...
T Consensus 49 dki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~ 128 (447)
T KOG4497|consen 49 DKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYL 128 (447)
T ss_pred HHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEE
Confidence 456678888883344556678899999999988888888888999999999999976554 5558899999998754322
Q ss_pred ccccccCCCcceeEEEEcCCCCeEEEEeCCCcE---EEEeCcCceeeeeEecCcccceeEEEEeeCCCcEEEEeecCCeE
Q 017194 95 PLESYNYNKEEINQIVCNPKSSFLACADDGGDV---KIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKL 171 (375)
Q Consensus 95 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i---~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i 171 (375)
+. ..+..+..++|+|||++.+..+.-... .+.....-..++.+. ..+-..+.+.|+|||. .++
T Consensus 129 -~~---~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~-~dT~DltgieWsPdg~-~la-------- 194 (447)
T KOG4497|consen 129 -LP---HPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFK-LDTIDLTGIEWSPDGN-WLA-------- 194 (447)
T ss_pred -ec---ccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcC-CCcccccCceECCCCc-EEE--------
Confidence 11 124567889999999998888754222 222122234455565 5556778999999997 343
Q ss_pred EEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCcceeeccccc--
Q 017194 172 VMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKST-- 249 (375)
Q Consensus 172 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-- 249 (375)
+||---.-.+..++. .-.+..++|+| .+++|++|+.|+.+++.+--+-+....+...
T Consensus 195 -Vwd~~Leykv~aYe~--------------~lG~k~v~wsP------~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s 253 (447)
T KOG4497|consen 195 -VWDNVLEYKVYAYER--------------GLGLKFVEWSP------CNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCS 253 (447)
T ss_pred -Eecchhhheeeeeee--------------ccceeEEEecc------ccceEEeeccchhhhhhceeeeeehhhhccchh
Confidence 555332222223332 25688999999 6999999999999999776543322221111
Q ss_pred ----------------CCCCCCceeecccccceeeee----eeecC-Ccc---eeEeeeeecCCCccEEEEEEeecCCCC
Q 017194 250 ----------------TKPLKGSQSTSKVNIRDAEME----ILDQS-GGK---RLHLDYSVGGHTAAASCVAFSMFGERG 305 (375)
Q Consensus 250 ----------------~~~~~~~~~~s~~g~~~~~~~----~~~~~-~~~---~~~~~~~~~~~~~~v~~~~~s~~~~~~ 305 (375)
......+++|.|..-...... .+... ... ..+...........+..++|+ +|.
T Consensus 254 ~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs---~Ds 330 (447)
T KOG4497|consen 254 YHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFS---CDS 330 (447)
T ss_pred ccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeec---CCc
Confidence 111223334433221110000 00000 000 111112222335568889999 999
Q ss_pred cEEEEecC--CCeEEEEeCCCceeeeecchhhhhhhhcccccceeeeeecCCCCCcEEEeeCCCeEEEEec
Q 017194 306 KYLISGGN--DKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSI 374 (375)
Q Consensus 306 ~~l~s~~~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~iw~~ 374 (375)
.|++|-.+ -+.+.+||++.. + +........+|....|.| ....|+.+.....+++|..
T Consensus 331 ~y~aTrnd~~PnalW~Wdlq~l---------~-l~avLiQk~piraf~WdP-~~prL~vctg~srLY~W~p 390 (447)
T KOG4497|consen 331 TYAATRNDKYPNALWLWDLQNL---------K-LHAVLIQKHPIRAFEWDP-GRPRLVVCTGKSRLYFWAP 390 (447)
T ss_pred eEEeeecCCCCceEEEEechhh---------h-hhhhhhhccceeEEEeCC-CCceEEEEcCCceEEEEcC
Confidence 99998754 478999999995 3 344555677899999999 4445777766678999964
No 211
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.82 E-value=4e-18 Score=151.73 Aligned_cols=275 Identities=12% Similarity=0.095 Sum_probs=186.0
Q ss_pred EecccCceeeEeeecCccEEEEEEeCCC-CeEEEEcCCCeEEEEECCCCC----cccccccccCCCcceeEEEEcCCCCe
Q 017194 43 FDLRSKDVQLVTDVGNGPVTSLCFKSGN-EDIIYVSSGKEVKSFDVHMPA----SWRPLESYNYNKEEINQIVCNPKSSF 117 (375)
Q Consensus 43 w~~~~~~~~~~~~~~~~~v~~l~~~~~~-~~l~~~~~d~~i~iwd~~~~~----~~~~~~~~~~~~~~v~~~~~~~~~~~ 117 (375)
|+. +|..+..+..|...+..++.++.. .++++|+.||+|++|+.+.-. ..+...++......+.++...+.++.
T Consensus 1034 W~p-~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~ 1112 (1431)
T KOG1240|consen 1034 WNP-RGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQ 1112 (1431)
T ss_pred CCc-cceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCe
Confidence 554 377788888999999999887654 899999999999999987421 11222223323678999999999999
Q ss_pred EEEEeCCCcEEEEeCcCc--e-----eeeeEecCcccceeEE-EEeeCCCc-EEEEeecCCeEEEeeCCCCCcceEEecC
Q 017194 118 LACADDGGDVKIIDIRQH--C-----LYKSLRAGHSSICSSV-QFIPWKPW-EVISGGLDSKLVMWDFSKGRPNKIVNFG 188 (375)
Q Consensus 118 l~~~~~dg~i~iwd~~~~--~-----~~~~~~~~~~~~v~~~-~~~~~~~~-~l~~~~~d~~i~~wd~~~~~~~~~~~~~ 188 (375)
+|+++.||.|++.+++.. + ..+.......+.+.+| +|...... .++.+..-+.|..||+++.....+++..
T Consensus 1113 ~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~ 1192 (1431)
T KOG1240|consen 1113 FAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQ 1192 (1431)
T ss_pred EEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcC
Confidence 999999999999998752 1 1111110112233333 34333333 6888889999999999988877776644
Q ss_pred CCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCcceeecccccCCCCCCceeecccccceee
Q 017194 189 LPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAE 268 (375)
Q Consensus 189 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~ 268 (375)
. ..+.|++++.+| .+.+++.|+..|.+.+||++-.......
T Consensus 1193 ~-----------~hG~vTSi~idp------~~~WlviGts~G~l~lWDLRF~~~i~sw---------------------- 1233 (1431)
T KOG1240|consen 1193 L-----------RHGLVTSIVIDP------WCNWLVIGTSRGQLVLWDLRFRVPILSW---------------------- 1233 (1431)
T ss_pred c-----------cccceeEEEecC------CceEEEEecCCceEEEEEeecCceeecc----------------------
Confidence 2 247899999999 6999999999999999999954322211
Q ss_pred eeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEec--CCCeEEEEeCCCceeeeecc---hhhhhhhhc--
Q 017194 269 MEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGG--NDKLVKVWDCSRFQGVQTSI---NNDLLIKNI-- 341 (375)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~--~dg~i~iwd~~~~~~~~~~~---~~~~~~~~~-- 341 (375)
.. ++..+++.+..+|+.+.....++++ ..+-|.+|++.++....... ....+....
T Consensus 1234 ----------------~~-P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps 1296 (1431)
T KOG1240|consen 1234 ----------------EH-PARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLRQTVLWASDGAPILSYALPS 1296 (1431)
T ss_pred ----------------cC-cccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCcceEEEEcCCCCcchhhhccc
Confidence 22 3347888888887666556666554 47789999999986542111 111111111
Q ss_pred -----ccccceeeeeecCCCCCcEEEeeCCCeEEEEecC
Q 017194 342 -----NLNKKVNWLCTTPTESENLVVCDTSKVVKVYSIS 375 (375)
Q Consensus 342 -----~~~~~v~~~~~~~~~~~~l~s~~~dg~v~iw~~~ 375 (375)
.+.-.....++.. .+..+.+|+.|..|+.||..
T Consensus 1297 ~~~~kp~~~~~~~~~~~~-~~~~~ltggsd~kIR~wD~~ 1334 (1431)
T KOG1240|consen 1297 NDARKPDSLAGISCGVCE-KNGFLLTGGSDMKIRKWDPT 1334 (1431)
T ss_pred ccCCCCCcccceeeeccc-CCceeeecCCccceeeccCC
Confidence 1112222233333 45689999999999999963
No 212
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.81 E-value=9.2e-17 Score=125.00 Aligned_cols=213 Identities=14% Similarity=0.091 Sum_probs=143.4
Q ss_pred CCceeEEEEecCCCCEEEEeCCCCcEEEEecccCce--------------eeEeeecCccEEEEEEeCCCCeEEEEcCC-
Q 017194 15 KATATCCIASRDRPGFVASSGEDGCICWFDLRSKDV--------------QLVTDVGNGPVTSLCFKSGNEDIIYVSSG- 79 (375)
Q Consensus 15 ~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~--------------~~~~~~~~~~v~~l~~~~~~~~l~~~~~d- 79 (375)
...|+|++|-|..+..|+.|+..| |.+|....... +..-.+| .+|++++|.+||..+++++.+
T Consensus 140 QrnvtclawRPlsaselavgCr~g-IciW~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gs 217 (445)
T KOG2139|consen 140 QRNVTCLAWRPLSASELAVGCRAG-ICIWSDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGS 217 (445)
T ss_pred hcceeEEEeccCCcceeeeeecce-eEEEEcCcccccccccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCc
Confidence 456999999999888899998865 99998653211 1112233 789999999999999999875
Q ss_pred CeEEEEECCCCCcccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCceeeeeEecCcccceeEEEEeeCCC
Q 017194 80 KEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKP 159 (375)
Q Consensus 80 ~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 159 (375)
..|.|||..++...... .. ..+.+.-+.|+||+.+|+++.-|+..++|+........... .-.+.|...+|+|+|.
T Consensus 218 ssi~iWdpdtg~~~pL~-~~--glgg~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~erw~-lgsgrvqtacWspcGs 293 (445)
T KOG2139|consen 218 SSIMIWDPDTGQKIPLI-PK--GLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKERWI-LGSGRVQTACWSPCGS 293 (445)
T ss_pred ceEEEEcCCCCCccccc-cc--CCCceeeEEEcCCCCEEEEecccceeeeehhcccceeccee-ccCCceeeeeecCCCC
Confidence 68999999987654333 11 25789999999999999999999999999655433322333 2345899999999999
Q ss_pred cEEEEeecCCeEEEeeCCCCCcc---------eEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCC
Q 017194 160 WEVISGGLDSKLVMWDFSKGRPN---------KIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDG 230 (375)
Q Consensus 160 ~~l~~~~~d~~i~~wd~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg 230 (375)
.+|++++....++--........ ..+....++.....+...--+.+.+++|.| .|.+|++....+
T Consensus 294 fLLf~~sgsp~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDp------sGeyLav~fKg~ 367 (445)
T KOG2139|consen 294 FLLFACSGSPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDP------SGEYLAVIFKGQ 367 (445)
T ss_pred EEEEEEcCCceEEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECC------CCCEEEEEEcCC
Confidence 77777765544433222211110 111111111111222222346788999998 799999887554
Q ss_pred --------cEEEEeCCC
Q 017194 231 --------VVDVINIES 239 (375)
Q Consensus 231 --------~i~i~d~~~ 239 (375)
.|.+||.+.
T Consensus 368 ~~v~~~k~~i~~fdtr~ 384 (445)
T KOG2139|consen 368 SFVLLCKLHISRFDTRK 384 (445)
T ss_pred chhhhhhhhhhhhcccc
Confidence 355566653
No 213
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.80 E-value=5.3e-18 Score=146.14 Aligned_cols=202 Identities=11% Similarity=0.078 Sum_probs=136.7
Q ss_pred CCCCCeeeecCCCceeEEEEecCCCCEEEEeCCC---CcEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEEc-CC
Q 017194 4 AEAKPRRLRGHKATATCCIASRDRPGFVASSGED---GCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVS-SG 79 (375)
Q Consensus 4 ~~~~~~~l~~h~~~i~~~~~~~~~~~~l~s~~~d---~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~-~d 79 (375)
.+...+.+..|...+.+..|+|| ++.|+..+.+ ..|.+||+.+++... +.........++|+|||+.|+.++ .+
T Consensus 192 dg~~~~~lt~~~~~v~~p~wSPD-G~~la~~s~~~~~~~i~i~dl~tg~~~~-l~~~~g~~~~~~wSPDG~~La~~~~~~ 269 (429)
T PRK01742 192 DGFNQFIVNRSSQPLMSPAWSPD-GSKLAYVSFENKKSQLVVHDLRSGARKV-VASFRGHNGAPAFSPDGSRLAFASSKD 269 (429)
T ss_pred CCCCceEeccCCCccccceEcCC-CCEEEEEEecCCCcEEEEEeCCCCceEE-EecCCCccCceeECCCCCEEEEEEecC
Confidence 34456677888889999999999 7888876543 479999998876422 221222344689999999888765 57
Q ss_pred CeEEE--EECCCCCcccccccccCCCcceeEEEEcCCCCeEEEEe-CCCcEEEEeCcCc-eeeeeEecCcccceeEEEEe
Q 017194 80 KEVKS--FDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACAD-DGGDVKIIDIRQH-CLYKSLRAGHSSICSSVQFI 155 (375)
Q Consensus 80 ~~i~i--wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~-~~~~~~~~~~~~~v~~~~~~ 155 (375)
|.+.| ||+.++.. ..+..+...+....|+||++.|+..+ .++...+|++... .....+ .+.. ....|+
T Consensus 270 g~~~Iy~~d~~~~~~----~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l--~~~~--~~~~~S 341 (429)
T PRK01742 270 GVLNIYVMGANGGTP----SQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV--GGRG--YSAQIS 341 (429)
T ss_pred CcEEEEEEECCCCCe----EeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe--cCCC--CCccCC
Confidence 76555 46654432 22333456788899999999877655 5778888876532 222222 2333 457899
Q ss_pred eCCCcEEEEeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEE
Q 017194 156 PWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVI 235 (375)
Q Consensus 156 ~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~ 235 (375)
|+|+ .++..+.++ +.+||+.+++... +... .....+.|+| ++++++.++.++.+.+|
T Consensus 342 pDG~-~ia~~~~~~-i~~~Dl~~g~~~~-lt~~--------------~~~~~~~~sP------dG~~i~~~s~~g~~~~l 398 (429)
T PRK01742 342 ADGK-TLVMINGDN-VVKQDLTSGSTEV-LSST--------------FLDESPSISP------NGIMIIYSSTQGLGKVL 398 (429)
T ss_pred CCCC-EEEEEcCCC-EEEEECCCCCeEE-ecCC--------------CCCCCceECC------CCCEEEEEEcCCCceEE
Confidence 9998 566666654 5669998876532 2111 1224567888 89999999999988888
Q ss_pred eCC
Q 017194 236 NIE 238 (375)
Q Consensus 236 d~~ 238 (375)
++.
T Consensus 399 ~~~ 401 (429)
T PRK01742 399 QLV 401 (429)
T ss_pred EEE
Confidence 764
No 214
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.80 E-value=3.6e-19 Score=142.46 Aligned_cols=266 Identities=14% Similarity=0.147 Sum_probs=205.5
Q ss_pred ceeEEEEecCCCCEEEEeCCCCcEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEEcCCCeEEEEECCCCCccccc
Q 017194 17 TATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPL 96 (375)
Q Consensus 17 ~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~ 96 (375)
.-+.+.++.+ |+.|+.|+.-|.|..+|..++.....+.. ...|.++.|..+.+++|++ ..+.++|||-. |..+..+
T Consensus 131 GPY~~~ytrn-GrhlllgGrKGHlAa~Dw~t~~L~~Ei~v-~Etv~Dv~~LHneq~~AVA-QK~y~yvYD~~-GtElHCl 206 (545)
T KOG1272|consen 131 GPYHLDYTRN-GRHLLLGGRKGHLAAFDWVTKKLHFEINV-METVRDVTFLHNEQFFAVA-QKKYVYVYDNN-GTELHCL 206 (545)
T ss_pred CCeeeeecCC-ccEEEecCCccceeeeecccceeeeeeeh-hhhhhhhhhhcchHHHHhh-hhceEEEecCC-CcEEeeh
Confidence 3456888888 89999999999999999999999888875 6789999998877766655 47889999965 5556666
Q ss_pred ccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCceeeeeEecCcccceeEEEEeeCCCcEEEEeecCCeEEEeeC
Q 017194 97 ESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDF 176 (375)
Q Consensus 97 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~ 176 (375)
+. ...|..+.|.|..-+|++++..|.++--|+.+|+.+..+. .-.+.+..|+-+|-+. ++-+|...|+|.+|..
T Consensus 207 k~----~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~-t~~G~~~vm~qNP~Na-Vih~GhsnGtVSlWSP 280 (545)
T KOG1272|consen 207 KR----HIRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIR-TGAGRTDVMKQNPYNA-VIHLGHSNGTVSLWSP 280 (545)
T ss_pred hh----cCchhhhcccchhheeeecccCCceEEEeechhhhhHHHH-ccCCccchhhcCCccc-eEEEcCCCceEEecCC
Confidence 65 3689999999998889999999999999999999999998 7778899999999887 8899999999999999
Q ss_pred CCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCcceeecccccCCCCCCc
Q 017194 177 SKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGS 256 (375)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~ 256 (375)
...+++..+.. |.++|.+|++.+ +|+++++++.|..++|||++...++..... ..+...
T Consensus 281 ~skePLvKiLc-------------H~g~V~siAv~~------~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~t--p~~a~~ 339 (545)
T KOG1272|consen 281 NSKEPLVKILC-------------HRGPVSSIAVDR------GGRYMATTGLDRKVKIWDLRNFYQLHTYRT--PHPASN 339 (545)
T ss_pred CCcchHHHHHh-------------cCCCcceEEECC------CCcEEeecccccceeEeeeccccccceeec--CCCccc
Confidence 99888876653 589999999999 899999999999999999998775554444 345666
Q ss_pred eeecccccceeeeee----eecCCcceeEeeeeecCC--CccEEEEEEeecCCCCcEEEEecCCCe
Q 017194 257 QSTSKVNIRDAEMEI----LDQSGGKRLHLDYSVGGH--TAAASCVAFSMFGERGKYLISGGNDKL 316 (375)
Q Consensus 257 ~~~s~~g~~~~~~~~----~~~~~~~~~~~~~~~~~~--~~~v~~~~~s~~~~~~~~l~s~~~dg~ 316 (375)
+++|..|-..+..|. |.............+..| ..+|..+.|. |-...|-.|-.-|.
T Consensus 340 ls~SqkglLA~~~G~~v~iw~d~~~~s~~~~~pYm~H~~~~~V~~l~Fc---P~EDvLGIGH~~G~ 402 (545)
T KOG1272|consen 340 LSLSQKGLLALSYGDHVQIWKDALKGSGHGETPYMNHRCGGPVEDLRFC---PYEDVLGIGHAGGI 402 (545)
T ss_pred cccccccceeeecCCeeeeehhhhcCCCCCCcchhhhccCcccccceec---cHHHeeeccccCCc
Confidence 778877766654332 211111111111122222 3489999999 54445555544443
No 215
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.80 E-value=6.3e-17 Score=133.23 Aligned_cols=292 Identities=13% Similarity=0.137 Sum_probs=201.1
Q ss_pred cCCCceeEEEEecCCCCE-EEEeCCCCcEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEEcCCCeEEEEECCCCC
Q 017194 13 GHKATATCCIASRDRPGF-VASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPA 91 (375)
Q Consensus 13 ~h~~~i~~~~~~~~~~~~-l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i~iwd~~~~~ 91 (375)
+|...-+.+..+|| |+| +|+|..--.|++||+........-......|.-.-++.|-..++.-..|.+|.+..-. |.
T Consensus 49 e~p~ast~ik~s~D-GqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~-G~ 126 (703)
T KOG2321|consen 49 EMPTASTRIKVSPD-GQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKY-GR 126 (703)
T ss_pred CCccccceeEecCC-CcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeehhhc-Ce
Confidence 36778889999999 565 6777788899999998655432222224455555566666666666778877665432 11
Q ss_pred cccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCceeeeeEecCcccceeEEEEeeCCCcEEEEeecCCeE
Q 017194 92 SWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKL 171 (375)
Q Consensus 92 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i 171 (375)
...+.. +..-.+++++.-..-|++++....|+-++++.|+.+..|. ...+.++++..++... +|++|+.+|.|
T Consensus 127 -hy~~RI----P~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~-~~~~~lN~v~in~~hg-Lla~Gt~~g~V 199 (703)
T KOG2321|consen 127 -HYRTRI----PKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFE-TDSGELNVVSINEEHG-LLACGTEDGVV 199 (703)
T ss_pred -eeeeec----CcCCccccccCCCccEEEeecCcceEEEEccccccccccc-cccccceeeeecCccc-eEEecccCceE
Confidence 111111 2233455665544445555556789999999999999998 6778999999999887 89999999999
Q ss_pred EEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCcceeecccccCC
Q 017194 172 VMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTK 251 (375)
Q Consensus 172 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~ 251 (375)
.+||.+....+..+.......+.. ..-....|+++.|+. +|-.+++|+.+|.+.|||+++.+..
T Consensus 200 EfwDpR~ksrv~~l~~~~~v~s~p--g~~~~~svTal~F~d------~gL~~aVGts~G~v~iyDLRa~~pl-------- 263 (703)
T KOG2321|consen 200 EFWDPRDKSRVGTLDAASSVNSHP--GGDAAPSVTALKFRD------DGLHVAVGTSTGSVLIYDLRASKPL-------- 263 (703)
T ss_pred EEecchhhhhheeeecccccCCCc--cccccCcceEEEecC------CceeEEeeccCCcEEEEEcccCCce--------
Confidence 999999988888887652210000 000123589999987 6999999999999999999974322
Q ss_pred CCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEecCCCeEEEEeCCCceeeeec
Q 017194 252 PLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTS 331 (375)
Q Consensus 252 ~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 331 (375)
+..-.+..-+|..+.|.+. .++..+++.. ...++|||-.+++
T Consensus 264 -------------------------------~~kdh~~e~pi~~l~~~~~-~~q~~v~S~D-k~~~kiWd~~~Gk----- 305 (703)
T KOG2321|consen 264 -------------------------------LVKDHGYELPIKKLDWQDT-DQQNKVVSMD-KRILKIWDECTGK----- 305 (703)
T ss_pred -------------------------------eecccCCccceeeeccccc-CCCceEEecc-hHHhhhcccccCC-----
Confidence 1122233567888999731 1245566655 4789999999984
Q ss_pred chhhhhhhhcccccceeeeeecCCCCCcEEEeeCCCeEEEEe
Q 017194 332 INNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYS 373 (375)
Q Consensus 332 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~iw~ 373 (375)
... ....+..++.+|+.| ++-+++++-.++.+..|-
T Consensus 306 ----~~a-siEpt~~lND~C~~p-~sGm~f~Ane~~~m~~yy 341 (703)
T KOG2321|consen 306 ----PMA-SIEPTSDLNDFCFVP-GSGMFFTANESSKMHTYY 341 (703)
T ss_pred ----cee-eccccCCcCceeeec-CCceEEEecCCCcceeEE
Confidence 332 233445699999999 777899988877666553
No 216
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.79 E-value=1.9e-16 Score=132.13 Aligned_cols=305 Identities=12% Similarity=0.096 Sum_probs=181.3
Q ss_pred CCCCCeeeecCCCceeEEEEecCCCCEEEEeCCCCcEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEEcC-CCeE
Q 017194 4 AEAKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSS-GKEV 82 (375)
Q Consensus 4 ~~~~~~~l~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~-d~~i 82 (375)
+.+.+.++....+.-..+.|+|| ++++++++.||.|.++|+.+++.+.++.. ......+++++||++++++.. .+.+
T Consensus 25 t~~~~~~i~~~~~~h~~~~~s~D-gr~~yv~~rdg~vsviD~~~~~~v~~i~~-G~~~~~i~~s~DG~~~~v~n~~~~~v 102 (369)
T PF02239_consen 25 TNKVVARIPTGGAPHAGLKFSPD-GRYLYVANRDGTVSVIDLATGKVVATIKV-GGNPRGIAVSPDGKYVYVANYEPGTV 102 (369)
T ss_dssp T-SEEEEEE-STTEEEEEE-TT--SSEEEEEETTSEEEEEETTSSSEEEEEE--SSEEEEEEE--TTTEEEEEEEETTEE
T ss_pred CCeEEEEEcCCCCceeEEEecCC-CCEEEEEcCCCeEEEEECCcccEEEEEec-CCCcceEEEcCCCCEEEEEecCCCce
Confidence 45566777765444445778998 89999999999999999999999999986 445678999999999987764 7899
Q ss_pred EEEECCCCCcccccccccC----CCcceeEEEEcCCCCeEEEEe-CCCcEEEEeCcCceee--eeEecCcccceeEEEEe
Q 017194 83 KSFDVHMPASWRPLESYNY----NKEEINQIVCNPKSSFLACAD-DGGDVKIIDIRQHCLY--KSLRAGHSSICSSVQFI 155 (375)
Q Consensus 83 ~iwd~~~~~~~~~~~~~~~----~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~--~~~~~~~~~~v~~~~~~ 155 (375)
.++|.++.+..+.+..... ....+..+..+|....++..- +.+.|.+.|....+.+ ..+. .........|.
T Consensus 103 ~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~--~g~~~~D~~~d 180 (369)
T PF02239_consen 103 SVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIK--VGRFPHDGGFD 180 (369)
T ss_dssp EEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE----TTEEEEEE-
T ss_pred eEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeec--ccccccccccC
Confidence 9999998665554443211 235677888888888555554 4588988897765433 3333 44567789999
Q ss_pred eCCCcEEEEeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCc---cc-cCCCCEEEEEecCCc
Q 017194 156 PWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDAD---ML-DKTNKICVVAKGDGV 231 (375)
Q Consensus 156 ~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~---~~-~~~~~~l~~~~~dg~ 231 (375)
|+++++++....+..|-++|..+++....+..+... ++.+...+ .+|.. |. ...+...++.-..+.
T Consensus 181 pdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p---------~~~~~~~~-php~~g~vw~~~~~~~~~~~~ig~~~ 250 (369)
T PF02239_consen 181 PDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKP---------HPGPGANF-PHPGFGPVWATSGLGYFAIPLIGTDP 250 (369)
T ss_dssp TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSB---------EETTEEEE-EETTTEEEEEEEBSSSSEEEEEE--T
T ss_pred cccceeeecccccceeEEEeeccceEEEEeeccccc---------cccccccc-cCCCcceEEeeccccceecccccCCc
Confidence 999976666677889999999998887777654211 12222221 12210 00 112333333334446
Q ss_pred EEEEeCCCcceeecccccCCCCCCceeecccccceeeeeeee-------cCCcceeEeeeeecCC-CccEEEEEEeecCC
Q 017194 232 VDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILD-------QSGGKRLHLDYSVGGH-TAAASCVAFSMFGE 303 (375)
Q Consensus 232 i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~-------~~~~~~~~~~~~~~~~-~~~v~~~~~s~~~~ 303 (375)
+.+||....+........... .-+..+|+++++......+ ..+...++....+... ...+..+.|+ +
T Consensus 251 v~v~d~~~wkvv~~I~~~G~g--lFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~---~ 325 (369)
T PF02239_consen 251 VSVHDDYAWKVVKTIPTQGGG--LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHMEFN---P 325 (369)
T ss_dssp TT-STTTBTSEEEEEE-SSSS----EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE----T
T ss_pred cccchhhcCeEEEEEECCCCc--ceeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEeccEEC---C
Confidence 667888877766666554322 6677899999998752111 1122222333333221 2348899999 9
Q ss_pred CCcEEEEecC--CCeEEEEeCCCcee
Q 017194 304 RGKYLISGGN--DKLVKVWDCSRFQG 327 (375)
Q Consensus 304 ~~~~l~s~~~--dg~i~iwd~~~~~~ 327 (375)
+|+++..+.. ++.|.+||..+.+.
T Consensus 326 dG~~v~vS~~~~~~~i~v~D~~Tl~~ 351 (369)
T PF02239_consen 326 DGKEVWVSVWDGNGAIVVYDAKTLKE 351 (369)
T ss_dssp TSSEEEEEEE--TTEEEEEETTTTEE
T ss_pred CCCEEEEEEecCCCEEEEEECCCcEE
Confidence 9997665543 44799999999854
No 217
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.79 E-value=4.6e-18 Score=126.53 Aligned_cols=248 Identities=19% Similarity=0.162 Sum_probs=166.3
Q ss_pred CCCeeee-cCCCceeEEEEecCCCCEEEEeCCCCcEEEEecccCceeeEeeecCccEEEEEEeCC-----CC----eEEE
Q 017194 6 AKPRRLR-GHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSG-----NE----DIIY 75 (375)
Q Consensus 6 ~~~~~l~-~h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~-----~~----~l~~ 75 (375)
..+-.++ .|...|+.+.--|+ ..+.+-+.|+.+.+|++.-+..+ ..|.-.++++.|.+. ++ .++.
T Consensus 46 r~~~~~r~~g~~~it~lq~~p~--d~l~tqgRd~~L~lw~ia~s~~i---~i~Si~~nslgFCrfSl~~~~k~~eqll~y 120 (323)
T KOG0322|consen 46 RDLPLIRLFGRLFITNLQSIPN--DSLDTQGRDPLLILWTIAYSAFI---SIHSIVVNSLGFCRFSLVKKPKNSEQLLEY 120 (323)
T ss_pred ccchhhhhhccceeeceeecCC--cchhhcCCCceEEEEEccCcceE---EEeeeeccccccccceeccCCCcchhheec
Confidence 3344555 56788999998885 57889999999999999865432 334455566666432 11 1111
Q ss_pred EcCCC-eEEEEECCCCCcccccc-cccCCCcceeEEEEcC-CCC--eEEEEeCCCcEEEEeCcCcee----------eee
Q 017194 76 VSSGK-EVKSFDVHMPASWRPLE-SYNYNKEEINQIVCNP-KSS--FLACADDGGDVKIIDIRQHCL----------YKS 140 (375)
Q Consensus 76 ~~~d~-~i~iwd~~~~~~~~~~~-~~~~~~~~v~~~~~~~-~~~--~l~~~~~dg~i~iwd~~~~~~----------~~~ 140 (375)
-+... .+.+-|........... .-....+.+.+..+.. .+. ++++|.++|.+.+||+.++.. ...
T Consensus 121 p~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~ 200 (323)
T KOG0322|consen 121 PSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESP 200 (323)
T ss_pred CCcccchhhhhccCccceeEccCchhccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccc
Confidence 11110 01111111100000000 0111245566666433 232 467888999999999998733 333
Q ss_pred EecCcccceeEEEEeeCCCcEEEEeecCCeEEEeeCCCC--Cc--ceEEecCCCCCCCCCCcccCCCceeEEeecCCccc
Q 017194 141 LRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKG--RP--NKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADML 216 (375)
Q Consensus 141 ~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~--~~--~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 216 (375)
.. .|..+|.++.|.+.-. .=++|+.+..+..|+++.. .+ ...+.. ....+..+.+.|
T Consensus 201 ~a-sh~qpvlsldyas~~~-rGisgga~dkl~~~Sl~~s~gslq~~~e~~l-------------knpGv~gvrIRp---- 261 (323)
T KOG0322|consen 201 NA-SHKQPVLSLDYASSCD-RGISGGADDKLVMYSLNHSTGSLQIRKEITL-------------KNPGVSGVRIRP---- 261 (323)
T ss_pred hh-hccCcceeeeechhhc-CCcCCCccccceeeeeccccCcccccceEEe-------------cCCCccceEEcc----
Confidence 34 6889999999987655 4677888888999988743 21 122222 235688889988
Q ss_pred cCCCCEEEEEecCCcEEEEeCCCcceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEE
Q 017194 217 DKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCV 296 (375)
Q Consensus 217 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 296 (375)
|++.+|+++.|+.|++|..++. +.+..++.|...|+++
T Consensus 262 --D~KIlATAGWD~RiRVyswrtl----------------------------------------~pLAVLkyHsagvn~v 299 (323)
T KOG0322|consen 262 --DGKILATAGWDHRIRVYSWRTL----------------------------------------NPLAVLKYHSAGVNAV 299 (323)
T ss_pred --CCcEEeecccCCcEEEEEeccC----------------------------------------CchhhhhhhhcceeEE
Confidence 8999999999999999999974 5566888999999999
Q ss_pred EEeecCCCCcEEEEecCCCeEEEEeC
Q 017194 297 AFSMFGERGKYLISGGNDKLVKVWDC 322 (375)
Q Consensus 297 ~~s~~~~~~~~l~s~~~dg~i~iwd~ 322 (375)
+|+ |+..++|+++.|++|.+|++
T Consensus 300 Afs---pd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 300 AFS---PDCELMAAASKDARISLWKL 322 (323)
T ss_pred EeC---CCCchhhhccCCceEEeeec
Confidence 999 89999999999999999986
No 218
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.78 E-value=6.1e-18 Score=137.99 Aligned_cols=163 Identities=18% Similarity=0.319 Sum_probs=134.5
Q ss_pred CCceeEEEEecCCCCEEEEeCCCCcEEEEeccc--------------Cc--------------eeeEeeecCccEEEEEE
Q 017194 15 KATATCCIASRDRPGFVASSGEDGCICWFDLRS--------------KD--------------VQLVTDVGNGPVTSLCF 66 (375)
Q Consensus 15 ~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~--------------~~--------------~~~~~~~~~~~v~~l~~ 66 (375)
+..|+|+.|-|.+...++.+-.+|.+.+||.+- +. ++..+..-...|...+|
T Consensus 219 ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~F 298 (636)
T KOG2394|consen 219 KSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAF 298 (636)
T ss_pred ccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccceeEeccccccceeE
Confidence 478999999998777888888999999997531 11 12222223568899999
Q ss_pred eCCCCeEEEEcCCCeEEEEECCCCCcccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCceeeeeEecCcc
Q 017194 67 KSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHS 146 (375)
Q Consensus 67 ~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 146 (375)
+|||++||+.+.||.++|+|..+.+.....+.+ -+...|++|+|||++|++|++|-.|.||.+..++.+..=. +|.
T Consensus 299 S~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSY---FGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARGq-GHk 374 (636)
T KOG2394|consen 299 SPDGKYLATVSQDGFLRIFDFDTQELLGVMKSY---FGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARGQ-GHK 374 (636)
T ss_pred cCCCceEEEEecCceEEEeeccHHHHHHHHHhh---ccceEEEEEcCCccEEEecCCcceEEEEEeccceEEEecc-ccc
Confidence 999999999999999999999986666666666 5789999999999999999999999999999999999988 999
Q ss_pred cceeEEEEeeC-----------------------------------------------CCcEEEEeecCCeEEEeeCCCC
Q 017194 147 SICSSVQFIPW-----------------------------------------------KPWEVISGGLDSKLVMWDFSKG 179 (375)
Q Consensus 147 ~~v~~~~~~~~-----------------------------------------------~~~~l~~~~~d~~i~~wd~~~~ 179 (375)
+.|..++|.|- -.|.|.+.+.|-++.+||+...
T Consensus 375 SWVs~VaFDpytt~~ee~~~~~~~~~~~~~~~~~~~~r~~~~~S~~~~~~s~~~~~~~v~YRfGSVGqDTqlcLWDlteD 454 (636)
T KOG2394|consen 375 SWVSVVAFDPYTTSTEEWNNFSGMDSTFSDVAHDFEIRANGTGSAEGCPLSSFNRINSVTYRFGSVGQDTQLCLWDLTED 454 (636)
T ss_pred cceeeEeecccccccccccccccccccccchhcccccccCCCCCcCCCcccccccccceEEEeecccccceEEEEecchh
Confidence 99999999830 1246788899999999999754
Q ss_pred Cc
Q 017194 180 RP 181 (375)
Q Consensus 180 ~~ 181 (375)
..
T Consensus 455 ~L 456 (636)
T KOG2394|consen 455 VL 456 (636)
T ss_pred hc
Confidence 43
No 219
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.78 E-value=8.5e-17 Score=131.41 Aligned_cols=234 Identities=18% Similarity=0.243 Sum_probs=155.4
Q ss_pred EEEEEEeCCCCeEEEEcCCCeEEEEECCCCCcc-cccccccCCCcceeEEEE-----cCCCCeEEEEeCCCcEEEEeCcC
Q 017194 61 VTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASW-RPLESYNYNKEEINQIVC-----NPKSSFLACADDGGDVKIIDIRQ 134 (375)
Q Consensus 61 v~~l~~~~~~~~l~~~~~d~~i~iwd~~~~~~~-~~~~~~~~~~~~v~~~~~-----~~~~~~l~~~~~dg~i~iwd~~~ 134 (375)
+....++-.|++|+..- ...+++|+.+.+... .++...........+-+| .|.+--++.|-.-|.|.+.|...
T Consensus 126 ~~~~~~~~~gd~lcFnv-g~~lyv~~~~g~~~~~~pi~k~~y~gt~P~cHdfn~~~a~~~g~dllIGf~tGqvq~idp~~ 204 (636)
T KOG2394|consen 126 VTNTNQSGKGDRLCFNV-GRELYVYSYRGAADLSKPIDKREYKGTSPTCHDFNSFTATPKGLDLLIGFTTGQVQLIDPIN 204 (636)
T ss_pred eeeccccCCCCEEEEec-CCeEEEEEccCcchhccchhhhcccCCCCceecccccccCCCCcceEEeeccCceEEecchh
Confidence 33444445566665433 457899998742221 222211111222333334 34566688898899999999876
Q ss_pred ceeeeeEec---CcccceeEEEEeeCCCcEEEEeecCCeEEEeeCCCCCc--------------ceEEec-CCCCCCCCC
Q 017194 135 HCLYKSLRA---GHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRP--------------NKIVNF-GLPENNGNA 196 (375)
Q Consensus 135 ~~~~~~~~~---~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~--------------~~~~~~-~~~~~~~~~ 196 (375)
.+..+.+.. -....|+++.|-|.++..|+.+-.+|.+++||..-... ...... .........
T Consensus 205 ~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~ 284 (636)
T KOG2394|consen 205 FEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVA 284 (636)
T ss_pred hHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccc
Confidence 433222220 13468999999998887888899999999998642110 000000 000000001
Q ss_pred CcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCcceeecccccCCCCCCceeecccccceeeeeeeecCC
Q 017194 197 GQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSG 276 (375)
Q Consensus 197 ~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~ 276 (375)
.-......|+..+|+| ||++||+.+.||.++|||..+.+
T Consensus 285 ~w~~~~g~in~f~FS~------DG~~LA~VSqDGfLRvF~fdt~e----------------------------------- 323 (636)
T KOG2394|consen 285 RWHIGEGSINEFAFSP------DGKYLATVSQDGFLRIFDFDTQE----------------------------------- 323 (636)
T ss_pred eeEeccccccceeEcC------CCceEEEEecCceEEEeeccHHH-----------------------------------
Confidence 1112345788888888 89999999999999999999742
Q ss_pred cceeEeeeeecCCCccEEEEEEeecCCCCcEEEEecCCCeEEEEeCCCceeeeecchhhhhhhhcccccceeeeeec
Q 017194 277 GKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTT 353 (375)
Q Consensus 277 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 353 (375)
++..++.--+...|++|| |||+||++|++|..|.||.+... +++..-.+|...|..++|.
T Consensus 324 -----Llg~mkSYFGGLLCvcWS---PDGKyIvtGGEDDLVtVwSf~er---------RVVARGqGHkSWVs~VaFD 383 (636)
T KOG2394|consen 324 -----LLGVMKSYFGGLLCVCWS---PDGKYIVTGGEDDLVTVWSFEER---------RVVARGQGHKSWVSVVAFD 383 (636)
T ss_pred -----HHHHHHhhccceEEEEEc---CCccEEEecCCcceEEEEEeccc---------eEEEeccccccceeeEeec
Confidence 222333445678999999 99999999999999999999998 7778888999999999997
No 220
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.77 E-value=2.9e-16 Score=123.37 Aligned_cols=248 Identities=11% Similarity=0.134 Sum_probs=177.2
Q ss_pred CCCceeEEEEecCCCC-EEEEeCCCCcEEEEecccCceeeEe------eecCccEEEEEEeCCCCeEEEEcCCCeEEEEE
Q 017194 14 HKATATCCIASRDRPG-FVASSGEDGCICWFDLRSKDVQLVT------DVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFD 86 (375)
Q Consensus 14 h~~~i~~~~~~~~~~~-~l~s~~~d~~i~iw~~~~~~~~~~~------~~~~~~v~~l~~~~~~~~l~~~~~d~~i~iwd 86 (375)
-...|..++|.-++.. .+...+.+..+....++.......+ .....+|..+... + ..|++|-.+|.+.+|.
T Consensus 54 ~~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~-d-g~Litc~~sG~l~~~~ 131 (412)
T KOG3881|consen 54 ELDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLA-D-GTLITCVSSGNLQVRH 131 (412)
T ss_pred hhhhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhc-C-CEEEEEecCCcEEEEe
Confidence 3456888888766333 3444446777888877766654332 3345677777664 3 3688888899999999
Q ss_pred CCCCCc-ccccccccCCCcceeEEEEcCCCCe-EEEEeCC--CcEEEEeCcCceeeeeEecC--------cccceeEEEE
Q 017194 87 VHMPAS-WRPLESYNYNKEEINQIVCNPKSSF-LACADDG--GDVKIIDIRQHCLYKSLRAG--------HSSICSSVQF 154 (375)
Q Consensus 87 ~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~d--g~i~iwd~~~~~~~~~~~~~--------~~~~v~~~~~ 154 (375)
.+.+.. ...+..+.. ..++..+.-++.... +++|+.. ..+.+||++..+.+..-+.. -.-.++++.|
T Consensus 132 ~k~~d~hss~l~~la~-g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~F 210 (412)
T KOG3881|consen 132 DKSGDLHSSKLIKLAT-GPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRF 210 (412)
T ss_pred ccCCccccccceeeec-CCceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeecccee
Confidence 884331 111112221 245666777775555 5558888 78999999877544332210 1125678888
Q ss_pred eeCC-CcEEEEeecCCeEEEeeCCCC-CcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcE
Q 017194 155 IPWK-PWEVISGGLDSKLVMWDFSKG-RPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVV 232 (375)
Q Consensus 155 ~~~~-~~~l~~~~~d~~i~~wd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i 232 (375)
.+.. .+.|++++.-+.+++||.+.+ +++..+.+. ..++.++...| +++++++|..-|.+
T Consensus 211 l~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~-------------E~~is~~~l~p------~gn~Iy~gn~~g~l 271 (412)
T KOG3881|consen 211 LEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFL-------------ENPISSTGLTP------SGNFIYTGNTKGQL 271 (412)
T ss_pred cCCCCCceEEEEecceeEEEecCcccCcceeEeccc-------------cCcceeeeecC------CCcEEEEecccchh
Confidence 8762 237999999999999999865 466666654 57899999999 79999999999999
Q ss_pred EEEeCCCcceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEec
Q 017194 233 DVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGG 312 (375)
Q Consensus 233 ~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~ 312 (375)
..||++.++.. ...+.+-.+.|+++..+ |.++++|+++
T Consensus 272 ~~FD~r~~kl~---------------------------------------g~~~kg~tGsirsih~h---p~~~~las~G 309 (412)
T KOG3881|consen 272 AKFDLRGGKLL---------------------------------------GCGLKGITGSIRSIHCH---PTHPVLASCG 309 (412)
T ss_pred heecccCceee---------------------------------------ccccCCccCCcceEEEc---CCCceEEeec
Confidence 99999975322 22366778899999999 8899999999
Q ss_pred CCCeEEEEeCCCc
Q 017194 313 NDKLVKVWDCSRF 325 (375)
Q Consensus 313 ~dg~i~iwd~~~~ 325 (375)
-|+.|+|+|+++.
T Consensus 310 LDRyvRIhD~ktr 322 (412)
T KOG3881|consen 310 LDRYVRIHDIKTR 322 (412)
T ss_pred cceeEEEeecccc
Confidence 9999999999996
No 221
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.77 E-value=5.8e-16 Score=133.20 Aligned_cols=234 Identities=12% Similarity=0.154 Sum_probs=156.0
Q ss_pred CcEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEEcC---CCeEEEEECCCCCcccccccccCCCcceeEEEEcCC
Q 017194 38 GCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSS---GKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPK 114 (375)
Q Consensus 38 ~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~---d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 114 (375)
..|.++|..... .+.+..+...+...+|+|||+.|+..+. +..|.+|++.+++. ..+..+. +.+..+.|+||
T Consensus 179 ~~l~~~d~dg~~-~~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~-~~l~~~~---~~~~~~~~SPD 253 (429)
T PRK03629 179 YELRVSDYDGYN-QFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAV-RQVASFP---RHNGAPAFSPD 253 (429)
T ss_pred eeEEEEcCCCCC-CEEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCe-EEccCCC---CCcCCeEECCC
Confidence 368899987554 3445556778999999999999987653 35799999987643 3333343 33556899999
Q ss_pred CCeEEEE-eCCC--cEEEEeCcCceeeeeEecCcccceeEEEEeeCCCcEEEEeec-CC--eEEEeeCCCCCcceEEecC
Q 017194 115 SSFLACA-DDGG--DVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGL-DS--KLVMWDFSKGRPNKIVNFG 188 (375)
Q Consensus 115 ~~~l~~~-~~dg--~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-d~--~i~~wd~~~~~~~~~~~~~ 188 (375)
|+.|+.. +.+| .|++||+++++..+ +. .+...+....|+|+|+ .|+..+. ++ .|+.+|+.+++. ..+...
T Consensus 254 G~~La~~~~~~g~~~I~~~d~~tg~~~~-lt-~~~~~~~~~~wSPDG~-~I~f~s~~~g~~~Iy~~d~~~g~~-~~lt~~ 329 (429)
T PRK03629 254 GSKLAFALSKTGSLNLYVMDLASGQIRQ-VT-DGRSNNTEPTWFPDSQ-NLAYTSDQAGRPQVYKVNINGGAP-QRITWE 329 (429)
T ss_pred CCEEEEEEcCCCCcEEEEEECCCCCEEE-cc-CCCCCcCceEECCCCC-EEEEEeCCCCCceEEEEECCCCCe-EEeecC
Confidence 9988865 3444 59999998876644 33 3445678899999998 4555443 44 455556665543 333321
Q ss_pred CCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecC---CcEEEEeCCCcceeecccccCCCCCCceeecccccc
Q 017194 189 LPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGD---GVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIR 265 (375)
Q Consensus 189 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~ 265 (375)
........|+| +|+.++..+.+ ..|.+||+.++..
T Consensus 330 -------------~~~~~~~~~Sp------DG~~Ia~~~~~~g~~~I~~~dl~~g~~----------------------- 367 (429)
T PRK03629 330 -------------GSQNQDADVSS------DGKFMVMVSSNGGQQHIAKQDLATGGV----------------------- 367 (429)
T ss_pred -------------CCCccCEEECC------CCCEEEEEEccCCCceEEEEECCCCCe-----------------------
Confidence 23345678888 79888776543 3588888876421
Q ss_pred eeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEecCCCe---EEEEeCCCceeeeecchhhhhhhhcc
Q 017194 266 DAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKL---VKVWDCSRFQGVQTSINNDLLIKNIN 342 (375)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~dg~---i~iwd~~~~~~~~~~~~~~~~~~~~~ 342 (375)
+ .+... .......|+ |||++|+.++.++. +.++++... ....+.+
T Consensus 368 ---------------~---~Lt~~-~~~~~p~~S---pDG~~i~~~s~~~~~~~l~~~~~~G~----------~~~~l~~ 415 (429)
T PRK03629 368 ---------------Q---VLTDT-FLDETPSIA---PNGTMVIYSSSQGMGSVLNLVSTDGR----------FKARLPA 415 (429)
T ss_pred ---------------E---EeCCC-CCCCCceEC---CCCCEEEEEEcCCCceEEEEEECCCC----------CeEECcc
Confidence 1 11111 112356789 99999998887764 777787553 3344566
Q ss_pred cccceeeeeecC
Q 017194 343 LNKKVNWLCTTP 354 (375)
Q Consensus 343 ~~~~v~~~~~~~ 354 (375)
|.+.+...+|+|
T Consensus 416 ~~~~~~~p~Wsp 427 (429)
T PRK03629 416 TDGQVKFPAWSP 427 (429)
T ss_pred CCCCcCCcccCC
Confidence 778888889987
No 222
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.76 E-value=2e-16 Score=124.30 Aligned_cols=255 Identities=13% Similarity=0.170 Sum_probs=185.3
Q ss_pred cCccEEEEEEeCCCC--eEEEEcCCCeEEEEECCCCCccccc---ccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEe
Q 017194 57 GNGPVTSLCFKSGNE--DIIYVSSGKEVKSFDVHMPASWRPL---ESYNYNKEEINQIVCNPKSSFLACADDGGDVKIID 131 (375)
Q Consensus 57 ~~~~v~~l~~~~~~~--~l~~~~~d~~i~iwd~~~~~~~~~~---~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd 131 (375)
....|..++|..+++ .++..+.+..+..+.+........+ ........+|..+... ++ .|++|-.+|.+.+|.
T Consensus 54 ~~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~-dg-~Litc~~sG~l~~~~ 131 (412)
T KOG3881|consen 54 ELDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLA-DG-TLITCVSSGNLQVRH 131 (412)
T ss_pred hhhhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhc-CC-EEEEEecCCcEEEEe
Confidence 356788888876554 3444446667777776644332221 1222335566666543 33 677778899999999
Q ss_pred CcCc----eeeeeEecCcccceeEEEEeeCCCcEEEEeecC--CeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCce
Q 017194 132 IRQH----CLYKSLRAGHSSICSSVQFIPWKPWEVISGGLD--SKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFV 205 (375)
Q Consensus 132 ~~~~----~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d--~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 205 (375)
.+.+ ..+..+. ....+..+.-++..++++++|+.. ..+.+||+...+.+..-+ ++....-...-+-++
T Consensus 132 ~k~~d~hss~l~~la--~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aK----NvpnD~L~LrVPvW~ 205 (412)
T KOG3881|consen 132 DKSGDLHSSKLIKLA--TGPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAK----NVPNDRLGLRVPVWI 205 (412)
T ss_pred ccCCccccccceeee--cCCceeeeccCCCCCceEecCchhcccceeeeecccceeeeecc----CCCCccccceeeeee
Confidence 8843 2344444 235677888888888788889998 889999999875554433 222233333456778
Q ss_pred eEEeecCCccccCCCCEEEEEecCCcEEEEeCCCcceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeee
Q 017194 206 HAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYS 285 (375)
Q Consensus 206 ~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~ 285 (375)
+.+.|.+. .....|++++.-+.+++||.+.++ +++..
T Consensus 206 tdi~Fl~g----~~~~~fat~T~~hqvR~YDt~~qR---------------------------------------RPV~~ 242 (412)
T KOG3881|consen 206 TDIRFLEG----SPNYKFATITRYHQVRLYDTRHQR---------------------------------------RPVAQ 242 (412)
T ss_pred ccceecCC----CCCceEEEEecceeEEEecCcccC---------------------------------------cceeE
Confidence 89999881 127889999999999999999754 23334
Q ss_pred ecCCCccEEEEEEeecCCCCcEEEEecCCCeEEEEeCCCceeeeecchhhhhh-hhcccccceeeeeecCCCCCcEEEee
Q 017194 286 VGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLI-KNINLNKKVNWLCTTPTESENLVVCD 364 (375)
Q Consensus 286 ~~~~~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~l~s~~ 364 (375)
+.--..++.++... |+++++++|..-|.+..||++.++ ++. .+.+..+.|.++..+| ...+|++++
T Consensus 243 fd~~E~~is~~~l~---p~gn~Iy~gn~~g~l~~FD~r~~k---------l~g~~~kg~tGsirsih~hp-~~~~las~G 309 (412)
T KOG3881|consen 243 FDFLENPISSTGLT---PSGNFIYTGNTKGQLAKFDLRGGK---------LLGCGLKGITGSIRSIHCHP-THPVLASCG 309 (412)
T ss_pred eccccCcceeeeec---CCCcEEEEecccchhheecccCce---------eeccccCCccCCcceEEEcC-CCceEEeec
Confidence 44457789999999 999999999999999999999984 443 4788999999999999 888999999
Q ss_pred CCCeEEEEecC
Q 017194 365 TSKVVKVYSIS 375 (375)
Q Consensus 365 ~dg~v~iw~~~ 375 (375)
-|..|||+|++
T Consensus 310 LDRyvRIhD~k 320 (412)
T KOG3881|consen 310 LDRYVRIHDIK 320 (412)
T ss_pred cceeEEEeecc
Confidence 99999999974
No 223
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.76 E-value=4.2e-17 Score=131.60 Aligned_cols=277 Identities=15% Similarity=0.118 Sum_probs=196.4
Q ss_pred eeEeeecCccEEEEEEeCCCCeEEEEcCCCeEEEEECCCCCcccccccccCCCcceeEEEEcCC--CCeEEEEeCCCcEE
Q 017194 51 QLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPK--SSFLACADDGGDVK 128 (375)
Q Consensus 51 ~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~ 128 (375)
...|..|.+.|..+.|+..|..|++++.|..|.+||+..++. .+.-..+|...|....|-|. .+.+++++.||.++
T Consensus 135 ~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~--~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr 212 (559)
T KOG1334|consen 135 QKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSP--KLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVR 212 (559)
T ss_pred hhcccCCCCccceeeecccCceeeccCccceEEeehhhccCc--ccccccccccchhhhhccCCCCCcCceeccccCcee
Confidence 456778999999999999999999999999999999986543 33344567788888888883 46799999999999
Q ss_pred EEeCcC-cee--eeeEecCcccceeEEEEeeCCCcEEEEeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCce
Q 017194 129 IIDIRQ-HCL--YKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFV 205 (375)
Q Consensus 129 iwd~~~-~~~--~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 205 (375)
+=.+.. +.+ ...+. .|.++|..++.-|+.++.|.+++.|+.+.-+|++.+.+...+.....+ . . ..-..
T Consensus 213 ~s~i~~t~~~e~t~rl~-~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~--~--~---~~v~L 284 (559)
T KOG1334|consen 213 VSEILETGYVENTKRLA-PHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREAD--E--K---ERVGL 284 (559)
T ss_pred eeeeccccceecceecc-cccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccC--C--c---cceee
Confidence 877653 222 34455 799999999999999888999999999999999988766555422000 0 0 01256
Q ss_pred eEEeecCCccccCCCCEEEEEecCCcEEEEeCCCcceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeee
Q 017194 206 HAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYS 285 (375)
Q Consensus 206 ~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~ 285 (375)
..++..|. +...+++++.|-.+++||.+.......... ...+..-.-
T Consensus 285 ~~Ia~~P~-----nt~~faVgG~dqf~RvYD~R~~~~e~~n~~----------------------------~~~f~p~hl 331 (559)
T KOG1334|consen 285 YTIAVDPR-----NTNEFAVGGSDQFARVYDQRRIDKEENNGV----------------------------LDKFCPHHL 331 (559)
T ss_pred eeEecCCC-----CccccccCChhhhhhhhcccchhhccccch----------------------------hhhcCCccc
Confidence 78999985 667999999999999999986322110000 000000001
Q ss_pred ecCCCccEEEEEEeecCCCCcEEEEecCCCeEEEEeCCCceeee---ecchhhhh-hhhccccc--ceeeeeecCCCCCc
Q 017194 286 VGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQ---TSINNDLL-IKNINLNK--KVNWLCTTPTESEN 359 (375)
Q Consensus 286 ~~~~~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~---~~~~~~~~-~~~~~~~~--~v~~~~~~~~~~~~ 359 (375)
.....-.|++++|+ .++.-|+++-.|-.|+++.-.-+.... .......+ +.+.+|.. .|..+-|.-+..+|
T Consensus 332 ~~d~~v~ITgl~Ys---h~~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEy 408 (559)
T KOG1334|consen 332 VEDDPVNITGLVYS---HDGSELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEY 408 (559)
T ss_pred cccCcccceeEEec---CCccceeeeecccceEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccce
Confidence 11234569999999 788777777778889999544332210 00001222 23677754 57788887668899
Q ss_pred EEEeeCCCeEEEEe
Q 017194 360 LVVCDTSKVVKVYS 373 (375)
Q Consensus 360 l~s~~~dg~v~iw~ 373 (375)
+++|+.-|.|.||+
T Consensus 409 VvSGSDCGhIFiW~ 422 (559)
T KOG1334|consen 409 VVSGSDCGHIFIWD 422 (559)
T ss_pred EEecCccceEEEEe
Confidence 99999999999997
No 224
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.76 E-value=7.2e-15 Score=112.68 Aligned_cols=179 Identities=14% Similarity=0.199 Sum_probs=137.9
Q ss_pred CcEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEEcCCCeEEEEECCC-CCcccccccccCCCcceeEEEEcCCCC
Q 017194 38 GCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHM-PASWRPLESYNYNKEEINQIVCNPKSS 116 (375)
Q Consensus 38 ~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~ 116 (375)
..|.|||=....++.++.- ..+|.++.+.++ .|++.- .+.|+||...+ .+....+.+... +..+.+++-..+..
T Consensus 75 NkviIWDD~k~~~i~el~f-~~~I~~V~l~r~--riVvvl-~~~I~VytF~~n~k~l~~~et~~N-PkGlC~~~~~~~k~ 149 (346)
T KOG2111|consen 75 NKVIIWDDLKERCIIELSF-NSEIKAVKLRRD--RIVVVL-ENKIYVYTFPDNPKLLHVIETRSN-PKGLCSLCPTSNKS 149 (346)
T ss_pred ceEEEEecccCcEEEEEEe-ccceeeEEEcCC--eEEEEe-cCeEEEEEcCCChhheeeeecccC-CCceEeecCCCCce
Confidence 4799999777777777764 789999999864 455544 78999999874 344444444432 23344443333444
Q ss_pred eEEEE-eCCCcEEEEeCcCcee--eeeEecCcccceeEEEEeeCCCcEEEEeecCCe-EEEeeCCCCCcceEEecCCCCC
Q 017194 117 FLACA-DDGGDVKIIDIRQHCL--YKSLRAGHSSICSSVQFIPWKPWEVISGGLDSK-LVMWDFSKGRPNKIVNFGLPEN 192 (375)
Q Consensus 117 ~l~~~-~~dg~i~iwd~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~-i~~wd~~~~~~~~~~~~~~~~~ 192 (375)
+||.- -.-|.|+|-|+...+. ...+. +|.+.|.+++++-+|. ++|+++..|+ |+|||..+|+.+.++.-+.
T Consensus 150 ~LafPg~k~GqvQi~dL~~~~~~~p~~I~-AH~s~Iacv~Ln~~Gt-~vATaStkGTLIRIFdt~~g~~l~E~RRG~--- 224 (346)
T KOG2111|consen 150 LLAFPGFKTGQVQIVDLASTKPNAPSIIN-AHDSDIACVALNLQGT-LVATASTKGTLIRIFDTEDGTLLQELRRGV--- 224 (346)
T ss_pred EEEcCCCccceEEEEEhhhcCcCCceEEE-cccCceeEEEEcCCcc-EEEEeccCcEEEEEEEcCCCcEeeeeecCC---
Confidence 55543 3569999999986655 46677 8999999999999998 8999999997 7899999999999998662
Q ss_pred CCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCc
Q 017194 193 NGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESE 240 (375)
Q Consensus 193 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~ 240 (375)
....|.+++|+| +..+|++++..|+|+||.++..
T Consensus 225 --------d~A~iy~iaFSp------~~s~LavsSdKgTlHiF~l~~~ 258 (346)
T KOG2111|consen 225 --------DRADIYCIAFSP------NSSWLAVSSDKGTLHIFSLRDT 258 (346)
T ss_pred --------chheEEEEEeCC------CccEEEEEcCCCeEEEEEeecC
Confidence 357899999999 8999999999999999999864
No 225
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.76 E-value=1.7e-15 Score=116.03 Aligned_cols=238 Identities=13% Similarity=0.210 Sum_probs=160.7
Q ss_pred cEEEEEEeCCCCeEEEEcCCCeEEEEECCCCCcccccccccCCCcceeEEEEcCCCCeEE-EEeCC------CcEEEEeC
Q 017194 60 PVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLA-CADDG------GDVKIIDI 132 (375)
Q Consensus 60 ~v~~l~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d------g~i~iwd~ 132 (375)
...+++|+.|...+++|. |.-.+||+.+- .+.......+.+.+.-+...-..++++ +|+.+ ..|.|||=
T Consensus 7 ~~lsvs~NQD~ScFava~-~~Gfriyn~~P---~ke~~~r~~~~~G~~~veMLfR~N~laLVGGg~~pky~pNkviIWDD 82 (346)
T KOG2111|consen 7 KTLSVSFNQDHSCFAVAT-DTGFRIYNCDP---FKESASRQFIDGGFKIVEMLFRSNYLALVGGGSRPKYPPNKVIIWDD 82 (346)
T ss_pred ceeEEEEccCCceEEEEe-cCceEEEecCc---hhhhhhhccccCchhhhhHhhhhceEEEecCCCCCCCCCceEEEEec
Confidence 344589999888777776 55589999873 222111111122222111122233444 34332 46999997
Q ss_pred cCceeeeeEecCcccceeEEEEeeCCCcEEEEeecCCeEEEeeCC-CCCcceEEecCCCCCCCCCCcccCCCceeEEeec
Q 017194 133 RQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFS-KGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIP 211 (375)
Q Consensus 133 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 211 (375)
...+++.++. ...+|.++.+.++ .+++.- .+.|++|... +.+.+..++... .|..+.++.-.
T Consensus 83 ~k~~~i~el~--f~~~I~~V~l~r~---riVvvl-~~~I~VytF~~n~k~l~~~et~~-----------NPkGlC~~~~~ 145 (346)
T KOG2111|consen 83 LKERCIIELS--FNSEIKAVKLRRD---RIVVVL-ENKIYVYTFPDNPKLLHVIETRS-----------NPKGLCSLCPT 145 (346)
T ss_pred ccCcEEEEEE--eccceeeEEEcCC---eEEEEe-cCeEEEEEcCCChhheeeeeccc-----------CCCceEeecCC
Confidence 7778888887 7889999999987 455554 5689999987 556666666431 23333333332
Q ss_pred CCccccCCCCEEEEE-ecCCcEEEEeCCCcceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCC
Q 017194 212 DADMLDKTNKICVVA-KGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHT 290 (375)
Q Consensus 212 ~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (375)
. +..+||.- -.-|.|+|-|+...+. .....+.+|.
T Consensus 146 ~------~k~~LafPg~k~GqvQi~dL~~~~~--------------------------------------~~p~~I~AH~ 181 (346)
T KOG2111|consen 146 S------NKSLLAFPGFKTGQVQIVDLASTKP--------------------------------------NAPSIINAHD 181 (346)
T ss_pred C------CceEEEcCCCccceEEEEEhhhcCc--------------------------------------CCceEEEccc
Confidence 2 33444443 3568999999985321 0123678999
Q ss_pred ccEEEEEEeecCCCCcEEEEecCCCe-EEEEeCCCceeeeecchhhhhhhhc--ccccceeeeeecCCCCCcEEEeeCCC
Q 017194 291 AAASCVAFSMFGERGKYLISGGNDKL-VKVWDCSRFQGVQTSINNDLLIKNI--NLNKKVNWLCTTPTESENLVVCDTSK 367 (375)
Q Consensus 291 ~~v~~~~~s~~~~~~~~l~s~~~dg~-i~iwd~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~s~~~dg 367 (375)
..|.+++.+ .+|..+||+|..|+ |||||..+++..+ .+. .....|.+++|+| ++.+|+++|+-|
T Consensus 182 s~Iacv~Ln---~~Gt~vATaStkGTLIRIFdt~~g~~l~---------E~RRG~d~A~iy~iaFSp-~~s~LavsSdKg 248 (346)
T KOG2111|consen 182 SDIACVALN---LQGTLVATASTKGTLIRIFDTEDGTLLQ---------ELRRGVDRADIYCIAFSP-NSSWLAVSSDKG 248 (346)
T ss_pred CceeEEEEc---CCccEEEEeccCcEEEEEEEcCCCcEee---------eeecCCchheEEEEEeCC-CccEEEEEcCCC
Confidence 999999999 99999999999997 8999999995432 222 2346799999999 999999999999
Q ss_pred eEEEEecC
Q 017194 368 VVKVYSIS 375 (375)
Q Consensus 368 ~v~iw~~~ 375 (375)
+|.|+.+.
T Consensus 249 TlHiF~l~ 256 (346)
T KOG2111|consen 249 TLHIFSLR 256 (346)
T ss_pred eEEEEEee
Confidence 99999863
No 226
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.76 E-value=7.4e-16 Score=132.57 Aligned_cols=205 Identities=10% Similarity=0.090 Sum_probs=136.2
Q ss_pred CCCCeeeecCCCceeEEEEecCCCCEEEEeC---CCCcEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEE-cCCC
Q 017194 5 EAKPRRLRGHKATATCCIASRDRPGFVASSG---EDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYV-SSGK 80 (375)
Q Consensus 5 ~~~~~~l~~h~~~i~~~~~~~~~~~~l~s~~---~d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~~d~ 80 (375)
+...+.+..+...+.+.+|+|| |+.|+..+ .+..|.+|++.+++... +......+....|+|||+.|+.. +.++
T Consensus 188 g~~~~~lt~~~~~~~~p~wSPD-G~~la~~s~~~g~~~i~i~dl~~G~~~~-l~~~~~~~~~~~~SPDG~~La~~~~~~g 265 (429)
T PRK03629 188 GYNQFVVHRSPQPLMSPAWSPD-GSKLAYVTFESGRSALVIQTLANGAVRQ-VASFPRHNGAPAFSPDGSKLAFALSKTG 265 (429)
T ss_pred CCCCEEeecCCCceeeeEEcCC-CCEEEEEEecCCCcEEEEEECCCCCeEE-ccCCCCCcCCeEECCCCCEEEEEEcCCC
Confidence 4455667667788999999999 78777543 24579999998876433 22223345578999999988865 3344
Q ss_pred --eEEEEECCCCCcccccccccCCCcceeEEEEcCCCCeEEEEeCC-C--cEEEEeCcCceeeeeEecCcccceeEEEEe
Q 017194 81 --EVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDG-G--DVKIIDIRQHCLYKSLRAGHSSICSSVQFI 155 (375)
Q Consensus 81 --~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-g--~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~ 155 (375)
.|++||+++++.. .+ ..+...+....|+||++.|+..+.+ + .|+++|+.+++. ..+. .+........|+
T Consensus 266 ~~~I~~~d~~tg~~~-~l---t~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~-~~lt-~~~~~~~~~~~S 339 (429)
T PRK03629 266 SLNLYVMDLASGQIR-QV---TDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAP-QRIT-WEGSQNQDADVS 339 (429)
T ss_pred CcEEEEEECCCCCEE-Ec---cCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCe-EEee-cCCCCccCEEEC
Confidence 6999999875432 22 2224567889999999988877654 3 455557766544 3343 344456678999
Q ss_pred eCCCcEEEEee-cC--CeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCc-
Q 017194 156 PWKPWEVISGG-LD--SKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGV- 231 (375)
Q Consensus 156 ~~~~~~l~~~~-~d--~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~- 231 (375)
|+|++ ++..+ .+ ..|.+||+.+++. ..+... .......|+| ||+.++.++.++.
T Consensus 340 pDG~~-Ia~~~~~~g~~~I~~~dl~~g~~-~~Lt~~--------------~~~~~p~~Sp------DG~~i~~~s~~~~~ 397 (429)
T PRK03629 340 SDGKF-MVMVSSNGGQQHIAKQDLATGGV-QVLTDT--------------FLDETPSIAP------NGTMVIYSSSQGMG 397 (429)
T ss_pred CCCCE-EEEEEccCCCceEEEEECCCCCe-EEeCCC--------------CCCCCceECC------CCCEEEEEEcCCCc
Confidence 99984 55443 33 3588899987753 333211 1223567888 8999999887764
Q ss_pred --EEEEeCCC
Q 017194 232 --VDVINIES 239 (375)
Q Consensus 232 --i~i~d~~~ 239 (375)
+.++++..
T Consensus 398 ~~l~~~~~~G 407 (429)
T PRK03629 398 SVLNLVSTDG 407 (429)
T ss_pred eEEEEEECCC
Confidence 66667653
No 227
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.74 E-value=7.3e-16 Score=133.27 Aligned_cols=235 Identities=12% Similarity=0.151 Sum_probs=153.1
Q ss_pred CcEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEEcCC---CeEEEEECCCCCcccccccccCCCcceeEEEEcCC
Q 017194 38 GCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSG---KEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPK 114 (375)
Q Consensus 38 ~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d---~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 114 (375)
..|.+||... ...+.+..+...+.+.+|+|+|+.|+..+.+ ..|++||+.+++. ..+... .+....+.|+||
T Consensus 184 ~~l~i~D~~g-~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~-~~l~~~---~g~~~~~~~SpD 258 (433)
T PRK04922 184 YALQVADSDG-YNPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQR-ELVASF---RGINGAPSFSPD 258 (433)
T ss_pred EEEEEECCCC-CCceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCE-EEeccC---CCCccCceECCC
Confidence 4699999864 4455566677889999999999999988743 4799999987653 233333 334557899999
Q ss_pred CCeEEE-EeCCC--cEEEEeCcCceeeeeEecCcccceeEEEEeeCCCcEEEEeecCCe--EEEeeCCCCCcceEEecCC
Q 017194 115 SSFLAC-ADDGG--DVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSK--LVMWDFSKGRPNKIVNFGL 189 (375)
Q Consensus 115 ~~~l~~-~~~dg--~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~--i~~wd~~~~~~~~~~~~~~ 189 (375)
|+.|+. .+.+| .|++||+.+++.. .+. .+.......+|+|+|++++++...+|. |+++|+.+++. ..+...
T Consensus 259 G~~l~~~~s~~g~~~Iy~~d~~~g~~~-~lt-~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~-~~lt~~- 334 (433)
T PRK04922 259 GRRLALTLSRDGNPEIYVMDLGSRQLT-RLT-NHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSA-ERLTFQ- 334 (433)
T ss_pred CCEEEEEEeCCCCceEEEEECCCCCeE-ECc-cCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCe-EEeecC-
Confidence 998764 44555 5999999887653 344 455556788999999843444434554 66677766553 333222
Q ss_pred CCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCC---cEEEEeCCCcceeecccccCCCCCCceeecccccce
Q 017194 190 PENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDG---VVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRD 266 (375)
Q Consensus 190 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg---~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~ 266 (375)
.......+|+| +|+.++..+.++ .|.+||+.++...
T Consensus 335 ------------g~~~~~~~~Sp------DG~~Ia~~~~~~~~~~I~v~d~~~g~~~----------------------- 373 (433)
T PRK04922 335 ------------GNYNARASVSP------DGKKIAMVHGSGGQYRIAVMDLSTGSVR----------------------- 373 (433)
T ss_pred ------------CCCccCEEECC------CCCEEEEEECCCCceeEEEEECCCCCeE-----------------------
Confidence 22344678998 799888776443 6899998764211
Q ss_pred eeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEecCC---CeEEEEeCCCceeeeecchhhhhhhhccc
Q 017194 267 AEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGND---KLVKVWDCSRFQGVQTSINNDLLIKNINL 343 (375)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 343 (375)
.+. +........|+ |||++|+..+.+ +.|.++++... ....+..+
T Consensus 374 ------------------~Lt-~~~~~~~p~~s---pdG~~i~~~s~~~g~~~L~~~~~~g~----------~~~~l~~~ 421 (433)
T PRK04922 374 ------------------TLT-PGSLDESPSFA---PNGSMVLYATREGGRGVLAAVSTDGR----------VRQRLVSA 421 (433)
T ss_pred ------------------ECC-CCCCCCCceEC---CCCCEEEEEEecCCceEEEEEECCCC----------ceEEcccC
Confidence 111 11123346788 899987766543 46888888653 22233344
Q ss_pred ccceeeeeecC
Q 017194 344 NKKVNWLCTTP 354 (375)
Q Consensus 344 ~~~v~~~~~~~ 354 (375)
.+.+...+|+|
T Consensus 422 ~g~~~~p~wsp 432 (433)
T PRK04922 422 DGEVREPAWSP 432 (433)
T ss_pred CCCCCCCccCC
Confidence 55666777776
No 228
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.73 E-value=1.2e-15 Score=131.35 Aligned_cols=235 Identities=14% Similarity=0.138 Sum_probs=148.5
Q ss_pred CcEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEEcCC---CeEEEEECCCCCcccccccccCCCcceeEEEEcCC
Q 017194 38 GCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSG---KEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPK 114 (375)
Q Consensus 38 ~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d---~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 114 (375)
..|.++|.. +.....+..+...+.+.+|+|+|+.|+..+.+ ..|.+||+.+++. ..+... .+.+....|+||
T Consensus 176 ~~L~~~D~d-G~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~-~~l~~~---~g~~~~~~~SPD 250 (427)
T PRK02889 176 YQLQISDAD-GQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRR-RVVANF---KGSNSAPAWSPD 250 (427)
T ss_pred cEEEEECCC-CCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCE-EEeecC---CCCccceEECCC
Confidence 457777764 44455555677889999999999999887653 3699999987653 233333 345668899999
Q ss_pred CCeEEE-EeCCCcEEEEe--CcCceeeeeEecCcccceeEEEEeeCCCcEEEEeecCCeEEEeeC--CCCCcceEEecCC
Q 017194 115 SSFLAC-ADDGGDVKIID--IRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDF--SKGRPNKIVNFGL 189 (375)
Q Consensus 115 ~~~l~~-~~~dg~i~iwd--~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~--~~~~~~~~~~~~~ 189 (375)
++.|+. .+.+|...+|. +..+. ...+. .+........|+|+|+.+++++..++...+|.+ ..++ ...+...
T Consensus 251 G~~la~~~~~~g~~~Iy~~d~~~~~-~~~lt-~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~-~~~lt~~- 326 (427)
T PRK02889 251 GRTLAVALSRDGNSQIYTVNADGSG-LRRLT-QSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGA-AQRVTFT- 326 (427)
T ss_pred CCEEEEEEccCCCceEEEEECCCCC-cEECC-CCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCc-eEEEecC-
Confidence 998874 56777766655 44443 44555 455556778999999854444444566666654 4333 2333222
Q ss_pred CCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCC---cEEEEeCCCcceeecccccCCCCCCceeecccccce
Q 017194 190 PENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDG---VVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRD 266 (375)
Q Consensus 190 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg---~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~ 266 (375)
........|+| +|++++..+.++ .|.+||+.++...
T Consensus 327 ------------g~~~~~~~~Sp------DG~~Ia~~s~~~g~~~I~v~d~~~g~~~----------------------- 365 (427)
T PRK02889 327 ------------GSYNTSPRISP------DGKLLAYISRVGGAFKLYVQDLATGQVT----------------------- 365 (427)
T ss_pred ------------CCCcCceEECC------CCCEEEEEEccCCcEEEEEEECCCCCeE-----------------------
Confidence 12234567888 899998777654 5999998864211
Q ss_pred eeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEecCCC---eEEEEeCCCceeeeecchhhhhhhhccc
Q 017194 267 AEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDK---LVKVWDCSRFQGVQTSINNDLLIKNINL 343 (375)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~dg---~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 343 (375)
.+... .......|+ |||+.|+..+.++ .+.+.++.. .....+..+
T Consensus 366 ------------------~lt~~-~~~~~p~~s---pdg~~l~~~~~~~g~~~l~~~~~~g----------~~~~~l~~~ 413 (427)
T PRK02889 366 ------------------ALTDT-TRDESPSFA---PNGRYILYATQQGGRSVLAAVSSDG----------RIKQRLSVQ 413 (427)
T ss_pred ------------------EccCC-CCccCceEC---CCCCEEEEEEecCCCEEEEEEECCC----------CceEEeecC
Confidence 11111 123456888 8999888776543 355556533 222233445
Q ss_pred ccceeeeeecC
Q 017194 344 NKKVNWLCTTP 354 (375)
Q Consensus 344 ~~~v~~~~~~~ 354 (375)
.+.+...+|+|
T Consensus 414 ~g~~~~p~wsp 424 (427)
T PRK02889 414 GGDVREPSWGP 424 (427)
T ss_pred CCCCCCCccCC
Confidence 56677778877
No 229
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.72 E-value=3.3e-15 Score=115.67 Aligned_cols=254 Identities=15% Similarity=0.178 Sum_probs=185.4
Q ss_pred CCeeeecCCCceeEEEEecCCCCEEEEeCCCCcEEEEecc-cCceeeEe-eecCccEEEEEEeCCCCeEEEEcCCCeEEE
Q 017194 7 KPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLR-SKDVQLVT-DVGNGPVTSLCFKSGNEDIIYVSSGKEVKS 84 (375)
Q Consensus 7 ~~~~l~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~-~~~~~~~~-~~~~~~v~~l~~~~~~~~l~~~~~d~~i~i 84 (375)
.++.++||.+.|+....-|. .+-+++.+.|.+++||--. .++.-..+ .....+++++.+.++...|+.+-..|++.-
T Consensus 16 ll~~~eG~~d~vn~~~l~~~-e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngtvte 94 (404)
T KOG1409|consen 16 LLSKIEGSQDDVNAAILIPK-EEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGTVTE 94 (404)
T ss_pred hhhhhcCchhhhhhheeccC-CCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecceEEE
Confidence 45678899999999888887 6789999999999999643 34432222 223678999999999999999999999988
Q ss_pred EECCCC-CcccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCceeeeeEecCcccceeEEEEeeCCCcEEE
Q 017194 85 FDVHMP-ASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVI 163 (375)
Q Consensus 85 wd~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~ 163 (375)
+.+... +.....+.+..|...+..+.|+....++++.+.|..+.---.+.+..+..+. .....+++.+.-. +..
T Consensus 95 fs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~--~~~~~t~~~~d~~---~~f 169 (404)
T KOG1409|consen 95 FALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYN--FETPASALQFDAL---YAF 169 (404)
T ss_pred EEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceE--eeccCCCCceeeE---EEE
Confidence 876532 2334556677789999999999998999999999887655555555544332 1222222222221 344
Q ss_pred EeecCCeEEEeeCCC--CCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCcc
Q 017194 164 SGGLDSKLVMWDFSK--GRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESEL 241 (375)
Q Consensus 164 ~~~~d~~i~~wd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~ 241 (375)
.|...|.|..-.+.. -.++.++. + |...+.+++|.| ..++|.+|..|..+.+||+...+
T Consensus 170 vGd~~gqvt~lr~~~~~~~~i~~~~-~------------h~~~~~~l~Wd~------~~~~LfSg~~d~~vi~wdigg~~ 230 (404)
T KOG1409|consen 170 VGDHSGQITMLKLEQNGCQLITTFN-G------------HTGEVTCLKWDP------GQRLLFSGASDHSVIMWDIGGRK 230 (404)
T ss_pred ecccccceEEEEEeecCCceEEEEc-C------------cccceEEEEEcC------CCcEEEeccccCceEEEeccCCc
Confidence 555566665554433 33444444 2 578899999998 68999999999999999998532
Q ss_pred eeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEecCCCeEEEEe
Q 017194 242 NISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWD 321 (375)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd 321 (375)
....++.+|...|..+... +--+.+.+++.||.|.+|+
T Consensus 231 ---------------------------------------g~~~el~gh~~kV~~l~~~---~~t~~l~S~~edg~i~~w~ 268 (404)
T KOG1409|consen 231 ---------------------------------------GTAYELQGHNDKVQALSYA---QHTRQLISCGEDGGIVVWN 268 (404)
T ss_pred ---------------------------------------ceeeeeccchhhhhhhhhh---hhheeeeeccCCCeEEEEe
Confidence 2334778899999998887 6778999999999999999
Q ss_pred CCCcee
Q 017194 322 CSRFQG 327 (375)
Q Consensus 322 ~~~~~~ 327 (375)
++....
T Consensus 269 mn~~r~ 274 (404)
T KOG1409|consen 269 MNVKRV 274 (404)
T ss_pred ccceee
Confidence 987643
No 230
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.72 E-value=1.4e-15 Score=117.13 Aligned_cols=283 Identities=11% Similarity=0.063 Sum_probs=174.8
Q ss_pred eecCCCceeEEEEecCCCCEEEEeCCCCcEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEEcCCCeEEEEECCCC
Q 017194 11 LRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMP 90 (375)
Q Consensus 11 l~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i~iwd~~~~ 90 (375)
++.-.+++....|+||+...|.+..-+-.|.+|.+.+.+.. .++..+..+..++|+|+|++.+.++........++..-
T Consensus 87 Ideg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~-~~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c 165 (447)
T KOG4497|consen 87 IDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGY-LLPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSC 165 (447)
T ss_pred eccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeE-EecccccCceeEEECCCCceeeeeecccHHHHHHHHhh
Confidence 34456789999999994466777888899999999877643 33334566789999999999888876432222233223
Q ss_pred CcccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCceeeeeEecCcccceeEEEEeeCCCcEEEEeecCCe
Q 017194 91 ASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSK 170 (375)
Q Consensus 91 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~ 170 (375)
+.+..++.+...+-..+.+.|+|||+.|++ ||---.-.+..+. ..-.+..++|+|.++ +++.|+.|+.
T Consensus 166 ~~W~ll~~f~~dT~DltgieWsPdg~~laV---------wd~~Leykv~aYe--~~lG~k~v~wsP~~q-flavGsyD~~ 233 (447)
T KOG4497|consen 166 KAWILLKEFKLDTIDLTGIEWSPDGNWLAV---------WDNVLEYKVYAYE--RGLGLKFVEWSPCNQ-FLAVGSYDQM 233 (447)
T ss_pred HHHHHHHhcCCCcccccCceECCCCcEEEE---------ecchhhheeeeee--eccceeEEEeccccc-eEEeeccchh
Confidence 345556666655677889999999987775 4321111111222 235688899999988 8999999999
Q ss_pred EEEeeCCCCCcceEEe----cCC-------------------------CCC------------------------CCCCC
Q 017194 171 LVMWDFSKGRPNKIVN----FGL-------------------------PEN------------------------NGNAG 197 (375)
Q Consensus 171 i~~wd~~~~~~~~~~~----~~~-------------------------~~~------------------------~~~~~ 197 (375)
+++.+--+-+...++- .+. ++. ...+.
T Consensus 234 lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD 313 (447)
T KOG4497|consen 234 LRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTD 313 (447)
T ss_pred hhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCC
Confidence 9886644332221111 000 000 00000
Q ss_pred cccCCCceeEEeecCCccccCCCCEEEEEec--CCcEEEEeCCCcceeecccccCCCCCCceeecccccceeeeeeeecC
Q 017194 198 QCYNPAFVHAIAIPDADMLDKTNKICVVAKG--DGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQS 275 (375)
Q Consensus 198 ~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~--dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~ 275 (375)
..-....+.-++|++ |..++++-.. -+.+-+||++..
T Consensus 314 ~pnPk~g~g~lafs~------Ds~y~aTrnd~~PnalW~Wdlq~l----------------------------------- 352 (447)
T KOG4497|consen 314 FPNPKCGAGKLAFSC------DSTYAATRNDKYPNALWLWDLQNL----------------------------------- 352 (447)
T ss_pred CCCcccccceeeecC------CceEEeeecCCCCceEEEEechhh-----------------------------------
Confidence 000112234445554 4555544432 234556665532
Q ss_pred CcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEecCCCeEEEEeCCCceeeeecchhhhhhhhcccccceeeeeecCC
Q 017194 276 GGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPT 355 (375)
Q Consensus 276 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 355 (375)
+ +..+-....+|....|. |....|+.+.....+++|....... + ...+..-.|..++|.-
T Consensus 353 -----~-l~avLiQk~piraf~Wd---P~~prL~vctg~srLY~W~psg~~~---------V-~vP~~GF~i~~l~W~~- 412 (447)
T KOG4497|consen 353 -----K-LHAVLIQKHPIRAFEWD---PGRPRLVVCTGKSRLYFWAPSGPRV---------V-GVPKKGFNIQKLQWLQ- 412 (447)
T ss_pred -----h-hhhhhhhccceeEEEeC---CCCceEEEEcCCceEEEEcCCCceE---------E-ecCCCCceeeeEEecC-
Confidence 1 11222346789999999 7777777777777899999887532 2 2233335789999998
Q ss_pred CCCcEEEeeCCC
Q 017194 356 ESENLVVCDTSK 367 (375)
Q Consensus 356 ~~~~l~s~~~dg 367 (375)
+|+.++.++.|.
T Consensus 413 ~g~~i~l~~kDa 424 (447)
T KOG4497|consen 413 PGEFIVLCGKDA 424 (447)
T ss_pred CCcEEEEEcCCc
Confidence 888999998885
No 231
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.71 E-value=5e-15 Score=114.76 Aligned_cols=275 Identities=12% Similarity=0.161 Sum_probs=173.9
Q ss_pred CCceeEEEEecCCCCEEEEeCCCCcEEEEecccCc-----eeeEeeec------------CccEEEEEEeCCCC--eEEE
Q 017194 15 KATATCCIASRDRPGFVASSGEDGCICWFDLRSKD-----VQLVTDVG------------NGPVTSLCFKSGNE--DIIY 75 (375)
Q Consensus 15 ~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~-----~~~~~~~~------------~~~v~~l~~~~~~~--~l~~ 75 (375)
.+-|.++.|... |++||+|..+|.|.++.-+... ....++.| ...|..+.|.++++ .++.
T Consensus 25 adiis~vef~~~-Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLl 103 (433)
T KOG1354|consen 25 ADIISAVEFDHY-GERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLL 103 (433)
T ss_pred hcceeeEEeecc-cceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEE
Confidence 456889999998 9999999999999999754322 12333334 36789999988664 5677
Q ss_pred EcCCCeEEEEECCCCCccc------------c-----cc---------------c-ccCCCcceeEEEEcCCCCeEEEEe
Q 017194 76 VSSGKEVKSFDVHMPASWR------------P-----LE---------------S-YNYNKEEINQIVCNPKSSFLACAD 122 (375)
Q Consensus 76 ~~~d~~i~iwd~~~~~~~~------------~-----~~---------------~-~~~~~~~v~~~~~~~~~~~l~~~~ 122 (375)
.+.|.+|++|.+....... . +. . -..|...|+++.++.|...++++
T Consensus 104 stNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSA- 182 (433)
T KOG1354|consen 104 STNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSA- 182 (433)
T ss_pred ecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeec-
Confidence 7889999999886422111 0 00 0 12477889999999999888887
Q ss_pred CCCcEEEEeCcCc-e--eeeeEecCc-----ccceeEEEEeeCCCcEEEEeecCCeEEEeeCCCCCcceEEe--cCCCCC
Q 017194 123 DGGDVKIIDIRQH-C--LYKSLRAGH-----SSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVN--FGLPEN 192 (375)
Q Consensus 123 ~dg~i~iwd~~~~-~--~~~~~~~~~-----~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~--~~~~~~ 192 (375)
.|-.|.+|+++-- + .+-.++ .+ ..-|++..|+|....+|+-.+..|+|++-|++.....-... +..|+.
T Consensus 183 DdLRINLWnlei~d~sFnIVDIK-P~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEeped 261 (433)
T KOG1354|consen 183 DDLRINLWNLEIIDQSFNIVDIK-PANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPED 261 (433)
T ss_pred cceeeeeccccccCCceeEEEcc-ccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccC
Confidence 5678999998732 1 122233 22 34678899999887789999999999999999543211100 011110
Q ss_pred CCCCCccc--CCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCcceeecccccCCCCCCceeecccccceeeee
Q 017194 193 NGNAGQCY--NPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEME 270 (375)
Q Consensus 193 ~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~ 270 (375)
.. ....+ --..|..+.|++ +|+++++-+. -+|++||+.....+..........
T Consensus 262 p~-~rsffseiIsSISDvKFs~------sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~~l----------------- 316 (433)
T KOG1354|consen 262 PS-SRSFFSEIISSISDVKFSH------SGRYILSRDY-LTVKLWDLNMEAKPVETYPVHEYL----------------- 316 (433)
T ss_pred Cc-chhhHHHHhhhhhceEEcc------CCcEEEEecc-ceeEEEeccccCCcceEEeehHhH-----------------
Confidence 00 00000 114578889998 7999998765 489999997543222111000000
Q ss_pred eeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEecCCCeEEEEeCCCcee
Q 017194 271 ILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQG 327 (375)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd~~~~~~ 327 (375)
...+.-+++-.. --.-..++|+ .++.+++||+..+..++++...+..
T Consensus 317 ------r~kLc~lYEnD~-IfdKFec~~s---g~~~~v~TGsy~n~frvf~~~~gsk 363 (433)
T KOG1354|consen 317 ------RSKLCSLYENDA-IFDKFECSWS---GNDSYVMTGSYNNVFRVFNLARGSK 363 (433)
T ss_pred ------HHHHHHHhhccc-hhheeEEEEc---CCcceEecccccceEEEecCCCCcc
Confidence 000000000000 0122456788 7888999999999999999766543
No 232
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.71 E-value=4.4e-15 Score=128.44 Aligned_cols=206 Identities=12% Similarity=0.101 Sum_probs=137.7
Q ss_pred CCCCCeeeecCCCceeEEEEecCCCCEEEEeCC---CCcEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEE-EcCC
Q 017194 4 AEAKPRRLRGHKATATCCIASRDRPGFVASSGE---DGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIY-VSSG 79 (375)
Q Consensus 4 ~~~~~~~l~~h~~~i~~~~~~~~~~~~l~s~~~---d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~-~~~d 79 (375)
.+...+.+..|...+.+.+|+|| ++.|+..+. +..|.+||+.+++.. .+........+.+|+|+|+.|+. .+.+
T Consensus 192 ~g~~~~~lt~~~~~v~~p~wSpD-g~~la~~s~~~~~~~l~~~dl~~g~~~-~l~~~~g~~~~~~~SpDG~~l~~~~s~~ 269 (433)
T PRK04922 192 DGYNPQTILRSAEPILSPAWSPD-GKKLAYVSFERGRSAIYVQDLATGQRE-LVASFRGINGAPSFSPDGRRLALTLSRD 269 (433)
T ss_pred CCCCceEeecCCCccccccCCCC-CCEEEEEecCCCCcEEEEEECCCCCEE-EeccCCCCccCceECCCCCEEEEEEeCC
Confidence 34556778778888999999999 788887653 346999999887653 33333445567899999998764 3444
Q ss_pred C--eEEEEECCCCCcccccccccCCCcceeEEEEcCCCCeEEEEeC-CCc--EEEEeCcCceeeeeEecCcccceeEEEE
Q 017194 80 K--EVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADD-GGD--VKIIDIRQHCLYKSLRAGHSSICSSVQF 154 (375)
Q Consensus 80 ~--~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~--i~iwd~~~~~~~~~~~~~~~~~v~~~~~ 154 (375)
+ .|++||+.+++. ..+ ..+.......+|+||++.|+..+. +|. |+++|+.+++... +. .+.......+|
T Consensus 270 g~~~Iy~~d~~~g~~-~~l---t~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~-lt-~~g~~~~~~~~ 343 (433)
T PRK04922 270 GNPEIYVMDLGSRQL-TRL---TNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAER-LT-FQGNYNARASV 343 (433)
T ss_pred CCceEEEEECCCCCe-EEC---ccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEE-ee-cCCCCccCEEE
Confidence 4 699999987643 222 223344567899999998887764 444 7777776665432 32 23344557899
Q ss_pred eeCCCcEEEEee-cCC--eEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecC--
Q 017194 155 IPWKPWEVISGG-LDS--KLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGD-- 229 (375)
Q Consensus 155 ~~~~~~~l~~~~-~d~--~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~d-- 229 (375)
+|+|++ ++..+ .++ .|.+||+.+++.. .+.. ........|+| ++++++..+.+
T Consensus 344 SpDG~~-Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt~--------------~~~~~~p~~sp------dG~~i~~~s~~~g 401 (433)
T PRK04922 344 SPDGKK-IAMVHGSGGQYRIAVMDLSTGSVR-TLTP--------------GSLDESPSFAP------NGSMVLYATREGG 401 (433)
T ss_pred CCCCCE-EEEEECCCCceeEEEEECCCCCeE-ECCC--------------CCCCCCceECC------CCCEEEEEEecCC
Confidence 999994 55443 332 6999999877643 3321 12334567888 89988777653
Q ss_pred -CcEEEEeCCC
Q 017194 230 -GVVDVINIES 239 (375)
Q Consensus 230 -g~i~i~d~~~ 239 (375)
+.|.++++..
T Consensus 402 ~~~L~~~~~~g 412 (433)
T PRK04922 402 RGVLAAVSTDG 412 (433)
T ss_pred ceEEEEEECCC
Confidence 3577777754
No 233
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.71 E-value=1.1e-14 Score=126.11 Aligned_cols=174 Identities=14% Similarity=0.169 Sum_probs=121.6
Q ss_pred CcEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEEcC---CCeEEEEECCCCCcccccccccCCCcceeEEEEcCC
Q 017194 38 GCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSS---GKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPK 114 (375)
Q Consensus 38 ~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~---d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 114 (375)
..|.++|.. +...+.+..|...+.+.+|+|||+.|+..+. +..|++||+.+++. ..+.. +.+.+...+|+||
T Consensus 182 ~~l~~~d~d-g~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~-~~l~~---~~g~~~~~~~SPD 256 (435)
T PRK05137 182 KRLAIMDQD-GANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQR-ELVGN---FPGMTFAPRFSPD 256 (435)
T ss_pred eEEEEECCC-CCCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcE-EEeec---CCCcccCcEECCC
Confidence 478889875 4445667778889999999999999988764 36899999987653 23332 3456778999999
Q ss_pred CCeEE-EEeCCCc--EEEEeCcCceeeeeEecCcccceeEEEEeeCCCcEEEEee-cCC--eEEEeeCCCCCcceEEecC
Q 017194 115 SSFLA-CADDGGD--VKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGG-LDS--KLVMWDFSKGRPNKIVNFG 188 (375)
Q Consensus 115 ~~~l~-~~~~dg~--i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~d~--~i~~wd~~~~~~~~~~~~~ 188 (375)
|+.|+ +.+.++. |++||+.+++. ..+. .+........|+|+|++ ++..+ .+| .|+++|+..++. ..+...
T Consensus 257 G~~la~~~~~~g~~~Iy~~d~~~~~~-~~Lt-~~~~~~~~~~~spDG~~-i~f~s~~~g~~~Iy~~d~~g~~~-~~lt~~ 332 (435)
T PRK05137 257 GRKVVMSLSQGGNTDIYTMDLRSGTT-TRLT-DSPAIDTSPSYSPDGSQ-IVFESDRSGSPQLYVMNADGSNP-RRISFG 332 (435)
T ss_pred CCEEEEEEecCCCceEEEEECCCCce-EEcc-CCCCccCceeEcCCCCE-EEEEECCCCCCeEEEEECCCCCe-EEeecC
Confidence 98876 4445554 78889887765 4455 45566778999999984 55444 333 688888775543 334322
Q ss_pred CCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecC---CcEEEEeCCC
Q 017194 189 LPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGD---GVVDVINIES 239 (375)
Q Consensus 189 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~d---g~i~i~d~~~ 239 (375)
...+....|+| +|+.++....+ ..|.+||+.+
T Consensus 333 -------------~~~~~~~~~Sp------dG~~ia~~~~~~~~~~i~~~d~~~ 367 (435)
T PRK05137 333 -------------GGRYSTPVWSP------RGDLIAFTKQGGGQFSIGVMKPDG 367 (435)
T ss_pred -------------CCcccCeEECC------CCCEEEEEEcCCCceEEEEEECCC
Confidence 23456678988 79988876643 3577788754
No 234
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.70 E-value=1.4e-14 Score=125.54 Aligned_cols=207 Identities=10% Similarity=0.077 Sum_probs=141.8
Q ss_pred CCCCCeeeecCCCceeEEEEecCCCCEEEEeCC---CCcEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEE-EcCC
Q 017194 4 AEAKPRRLRGHKATATCCIASRDRPGFVASSGE---DGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIY-VSSG 79 (375)
Q Consensus 4 ~~~~~~~l~~h~~~i~~~~~~~~~~~~l~s~~~---d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~-~~~d 79 (375)
.+...+.+..|.+.+.+.+|+|| ++.|+..+. +..|.+||+.+++. ..+..+.+.+...+|+|+|+.|+. .+.+
T Consensus 190 dg~~~~~lt~~~~~v~~p~wSpD-G~~lay~s~~~g~~~i~~~dl~~g~~-~~l~~~~g~~~~~~~SPDG~~la~~~~~~ 267 (435)
T PRK05137 190 DGANVRYLTDGSSLVLTPRFSPN-RQEITYMSYANGRPRVYLLDLETGQR-ELVGNFPGMTFAPRFSPDGRKVVMSLSQG 267 (435)
T ss_pred CCCCcEEEecCCCCeEeeEECCC-CCEEEEEEecCCCCEEEEEECCCCcE-EEeecCCCcccCcEECCCCCEEEEEEecC
Confidence 34556778888899999999999 787776643 46899999988765 345555667788999999998764 4444
Q ss_pred C--eEEEEECCCCCcccccccccCCCcceeEEEEcCCCCeEEEEeC-CC--cEEEEeCcCceeeeeEecCcccceeEEEE
Q 017194 80 K--EVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADD-GG--DVKIIDIRQHCLYKSLRAGHSSICSSVQF 154 (375)
Q Consensus 80 ~--~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg--~i~iwd~~~~~~~~~~~~~~~~~v~~~~~ 154 (375)
+ .|++||+.++.. ..+ ..+........|+||++.|+..+. +| .|+++|+..++.. .+. .+...+....|
T Consensus 268 g~~~Iy~~d~~~~~~-~~L---t~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~-~lt-~~~~~~~~~~~ 341 (435)
T PRK05137 268 GNTDIYTMDLRSGTT-TRL---TDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPR-RIS-FGGGRYSTPVW 341 (435)
T ss_pred CCceEEEEECCCCce-EEc---cCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeE-Eee-cCCCcccCeEE
Confidence 4 578889886543 222 223455677899999999887763 33 6888898766543 343 34455677899
Q ss_pred eeCCCcEEEEeec-C--CeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecC--
Q 017194 155 IPWKPWEVISGGL-D--SKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGD-- 229 (375)
Q Consensus 155 ~~~~~~~l~~~~~-d--~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~d-- 229 (375)
+|+|+. ++.... . ..|.+||+..+. ...+.. ...+....|+| +|+.|+..+.+
T Consensus 342 SpdG~~-ia~~~~~~~~~~i~~~d~~~~~-~~~lt~--------------~~~~~~p~~sp------DG~~i~~~~~~~~ 399 (435)
T PRK05137 342 SPRGDL-IAFTKQGGGQFSIGVMKPDGSG-ERILTS--------------GFLVEGPTWAP------NGRVIMFFRQTPG 399 (435)
T ss_pred CCCCCE-EEEEEcCCCceEEEEEECCCCc-eEeccC--------------CCCCCCCeECC------CCCEEEEEEccCC
Confidence 999994 555443 2 368888876443 333321 12356778888 79888776543
Q ss_pred ----CcEEEEeCCCc
Q 017194 230 ----GVVDVINIESE 240 (375)
Q Consensus 230 ----g~i~i~d~~~~ 240 (375)
..|.++|+...
T Consensus 400 ~~~~~~L~~~dl~g~ 414 (435)
T PRK05137 400 SGGAPKLYTVDLTGR 414 (435)
T ss_pred CCCcceEEEEECCCC
Confidence 25777787653
No 235
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.70 E-value=1e-14 Score=125.73 Aligned_cols=205 Identities=11% Similarity=0.083 Sum_probs=131.5
Q ss_pred CCCCCeeeecCCCceeEEEEecCCCCEEEEeCCC---CcEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEE-EcCC
Q 017194 4 AEAKPRRLRGHKATATCCIASRDRPGFVASSGED---GCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIY-VSSG 79 (375)
Q Consensus 4 ~~~~~~~l~~h~~~i~~~~~~~~~~~~l~s~~~d---~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~-~~~d 79 (375)
.+...+.+..+.+.+.+.+|+|| ++.|+..+.+ ..|.+||+.+++... +......+...+|+|||+.|+. .+.+
T Consensus 184 dG~~~~~l~~~~~~v~~p~wSPD-G~~la~~s~~~~~~~I~~~dl~~g~~~~-l~~~~g~~~~~~~SPDG~~la~~~~~~ 261 (427)
T PRK02889 184 DGQNAQSALSSPEPIISPAWSPD-GTKLAYVSFESKKPVVYVHDLATGRRRV-VANFKGSNSAPAWSPDGRTLAVALSRD 261 (427)
T ss_pred CCCCceEeccCCCCcccceEcCC-CCEEEEEEccCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCEEEEEEccC
Confidence 34555667778889999999999 7877766532 459999999887543 3333455678999999998874 5667
Q ss_pred CeEEEEE--CCCCCcccccccccCCCcceeEEEEcCCCCeEEEEeC-CCcEEEEeC--cCceeeeeEecCcccceeEEEE
Q 017194 80 KEVKSFD--VHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADD-GGDVKIIDI--RQHCLYKSLRAGHSSICSSVQF 154 (375)
Q Consensus 80 ~~i~iwd--~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~iwd~--~~~~~~~~~~~~~~~~v~~~~~ 154 (375)
+...+|. +.++. ... +..+........|+|||+.|+..+. +|...+|.+ .+++. ..+. ..........|
T Consensus 262 g~~~Iy~~d~~~~~-~~~---lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~-~~lt-~~g~~~~~~~~ 335 (427)
T PRK02889 262 GNSQIYTVNADGSG-LRR---LTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAA-QRVT-FTGSYNTSPRI 335 (427)
T ss_pred CCceEEEEECCCCC-cEE---CCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCce-EEEe-cCCCCcCceEE
Confidence 7655555 44332 222 2223445667889999998876654 455555554 44443 2222 22333456789
Q ss_pred eeCCCcEEEEeecCC---eEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCC-
Q 017194 155 IPWKPWEVISGGLDS---KLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDG- 230 (375)
Q Consensus 155 ~~~~~~~l~~~~~d~---~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg- 230 (375)
+|+|+ .++..+.++ .|.+||+.+++.. .+.. ........|+| +++.|+.++.++
T Consensus 336 SpDG~-~Ia~~s~~~g~~~I~v~d~~~g~~~-~lt~--------------~~~~~~p~~sp------dg~~l~~~~~~~g 393 (427)
T PRK02889 336 SPDGK-LLAYISRVGGAFKLYVQDLATGQVT-ALTD--------------TTRDESPSFAP------NGRYILYATQQGG 393 (427)
T ss_pred CCCCC-EEEEEEccCCcEEEEEEECCCCCeE-EccC--------------CCCccCceECC------CCCEEEEEEecCC
Confidence 99999 465555443 6999999877643 2221 12235678888 798888877544
Q ss_pred --cEEEEeCC
Q 017194 231 --VVDVINIE 238 (375)
Q Consensus 231 --~i~i~d~~ 238 (375)
.+.+.++.
T Consensus 394 ~~~l~~~~~~ 403 (427)
T PRK02889 394 RSVLAAVSSD 403 (427)
T ss_pred CEEEEEEECC
Confidence 34444553
No 236
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.69 E-value=1.1e-14 Score=110.47 Aligned_cols=273 Identities=11% Similarity=0.061 Sum_probs=181.2
Q ss_pred CCCcEEEEecccCceee--Ee-eecCccEEEEEEeC---CCC-eEEEEcCCCeEEEEECCCCCcccccccccCC---Ccc
Q 017194 36 EDGCICWFDLRSKDVQL--VT-DVGNGPVTSLCFKS---GNE-DIIYVSSGKEVKSFDVHMPASWRPLESYNYN---KEE 105 (375)
Q Consensus 36 ~d~~i~iw~~~~~~~~~--~~-~~~~~~v~~l~~~~---~~~-~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~---~~~ 105 (375)
.-|.+.+|++...+... ++ ......+..+.|.- +|. .++-+-..|.|.++..........+..+... ...
T Consensus 44 R~Gkl~Lys~~d~~~~~l~~~q~~dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~ 123 (339)
T KOG0280|consen 44 RSGKLHLYSLEDMKLSPLDTLQCTDTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVE 123 (339)
T ss_pred eccceEEEeecccccCccceeeeecccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhhee
Confidence 34678899987765432 22 22356677788853 444 4566677899999987643322222222211 123
Q ss_pred eeEEEEcCCCCeEEEEeCCCcEEEEeCcCcee--eeeEecCcccceeEEEEeeCCCcEEEEeecCCeEEEeeCCCCC-cc
Q 017194 106 INQIVCNPKSSFLACADDGGDVKIIDIRQHCL--YKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGR-PN 182 (375)
Q Consensus 106 v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~-~~ 182 (375)
..++.|++.+..++++..+|.+.+-+...... ++.++ .|+.+++...|+...+.++.+|+.|+.+..||++..+ .+
T Consensus 124 ~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk-~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i 202 (339)
T KOG0280|consen 124 ALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWK-VHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFI 202 (339)
T ss_pred eeEEEeeccCceEEEEcCCCcEEEEecceeeeeeccccc-ccceeeeeeecccCCCceEEecCCCceEEEEEecCCccee
Confidence 45788999999999999999999776655543 44788 9999999999998887799999999999999999433 22
Q ss_pred eEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCcceeecccccCCCCCCceeeccc
Q 017194 183 KIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKV 262 (375)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~ 262 (375)
..- ...|...|.+|.-+|. .+.++++|+.|-.|++||.++..++.
T Consensus 203 ~~n------------~kvH~~GV~SI~ss~~-----~~~~I~TGsYDe~i~~~DtRnm~kPl------------------ 247 (339)
T KOG0280|consen 203 WHN------------SKVHTSGVVSIYSSPP-----KPTYIATGSYDECIRVLDTRNMGKPL------------------ 247 (339)
T ss_pred eec------------ceeeecceEEEecCCC-----CCceEEEeccccceeeeehhcccCcc------------------
Confidence 221 1125678888988875 78999999999999999999642221
Q ss_pred ccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEecCCCeEEEEeCCCceeeeecchhhhhhhhcc
Q 017194 263 NIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNIN 342 (375)
Q Consensus 263 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 342 (375)
..- .-.+.|+.+..+|+. .+++|+++-.+| .+|-+.+..... ....+.....
T Consensus 248 ---------------------~~~-~v~GGVWRi~~~p~~-~~~lL~~CMh~G-~ki~~~~~~~~e----~~~~~~s~~~ 299 (339)
T KOG0280|consen 248 ---------------------FKA-KVGGGVWRIKHHPEI-FHRLLAACMHNG-AKILDSSDKVLE----FQIVLPSDKI 299 (339)
T ss_pred ---------------------ccC-ccccceEEEEecchh-hhHHHHHHHhcC-ceEEEecccccc----hheeeecccc
Confidence 111 113789999998642 234455554444 777777765321 0013334556
Q ss_pred cccceeeeeecCCCCCcEEEee-CCCeEE-EEe
Q 017194 343 LNKKVNWLCTTPTESENLVVCD-TSKVVK-VYS 373 (375)
Q Consensus 343 ~~~~v~~~~~~~~~~~~l~s~~-~dg~v~-iw~ 373 (375)
|.+-+..-.|... ...|+||+ .|+.++ +|-
T Consensus 300 hdSl~YG~DWd~~-~~~lATCsFYDk~~~~~Wl 331 (339)
T KOG0280|consen 300 HDSLCYGGDWDSK-DSFLATCSFYDKKIRQLWL 331 (339)
T ss_pred ccceeeccccccc-cceeeeeeccccceeeeee
Confidence 7777777777653 34688876 677755 773
No 237
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.69 E-value=2.6e-15 Score=116.29 Aligned_cols=250 Identities=19% Similarity=0.272 Sum_probs=191.1
Q ss_pred eeeEeeecCccEEEEEEeCCCCeEEEEcCCCeEEEEEC-CCCCcccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEE
Q 017194 50 VQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDV-HMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVK 128 (375)
Q Consensus 50 ~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i~iwd~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 128 (375)
.+..+++|.+.+++...-|..+-+++.+.|.++++|-- +.++.+..+.... ..+++++.+.++...|++|-.+|++.
T Consensus 16 ll~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~m--P~~~~~~~y~~e~~~L~vg~~ngtvt 93 (404)
T KOG1409|consen 16 LLSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYM--PSPCSAMEYVSESRRLYVGQDNGTVT 93 (404)
T ss_pred hhhhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhC--CCCceEeeeeccceEEEEEEecceEE
Confidence 46677889999999888888888999999999999964 4455555554443 67899999999999999999999999
Q ss_pred EEeCc----CceeeeeEecCcccceeEEEEeeCCCcEEEEeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCc
Q 017194 129 IIDIR----QHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAF 204 (375)
Q Consensus 129 iwd~~----~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (375)
-+.+. ....++.+. .|...+..+-|+-... .+++.+.|..+.---.+.+..+..+.+. ..
T Consensus 94 efs~sedfnkm~~~r~~~-~h~~~v~~~if~~~~e-~V~s~~~dk~~~~hc~e~~~~lg~Y~~~--------------~~ 157 (404)
T KOG1409|consen 94 EFALSEDFNKMTFLKDYL-AHQARVSAIVFSLTHE-WVLSTGKDKQFAWHCTESGNRLGGYNFE--------------TP 157 (404)
T ss_pred EEEhhhhhhhcchhhhhh-hhhcceeeEEecCCce-eEEEeccccceEEEeeccCCcccceEee--------------cc
Confidence 88765 334455566 7999999999988777 5888888887766556666655544432 12
Q ss_pred eeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCcceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeee
Q 017194 205 VHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDY 284 (375)
Q Consensus 205 v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~ 284 (375)
...+.+. -.+..+|...|.|.+..+. .....++.
T Consensus 158 ~t~~~~d--------~~~~fvGd~~gqvt~lr~~--------------------------------------~~~~~~i~ 191 (404)
T KOG1409|consen 158 ASALQFD--------ALYAFVGDHSGQITMLKLE--------------------------------------QNGCQLIT 191 (404)
T ss_pred CCCCcee--------eEEEEecccccceEEEEEe--------------------------------------ecCCceEE
Confidence 2222222 1255666667777666554 22346777
Q ss_pred eecCCCccEEEEEEeecCCCCcEEEEecCCCeEEEEeCCCceeeeecchhhhhhhhcccccceeeeeecCCCCCcEEEee
Q 017194 285 SVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCD 364 (375)
Q Consensus 285 ~~~~~~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~ 364 (375)
++.+|...+.+++|. +..+.|.+|..|..+.+||+.-.+ .....+.+|.+.|..+...+ --+.|++++
T Consensus 192 ~~~~h~~~~~~l~Wd---~~~~~LfSg~~d~~vi~wdigg~~--------g~~~el~gh~~kV~~l~~~~-~t~~l~S~~ 259 (404)
T KOG1409|consen 192 TFNGHTGEVTCLKWD---PGQRLLFSGASDHSVIMWDIGGRK--------GTAYELQGHNDKVQALSYAQ-HTRQLISCG 259 (404)
T ss_pred EEcCcccceEEEEEc---CCCcEEEeccccCceEEEeccCCc--------ceeeeeccchhhhhhhhhhh-hheeeeecc
Confidence 999999999999999 888999999999999999998875 33346678999999888777 567899999
Q ss_pred CCCeEEEEecC
Q 017194 365 TSKVVKVYSIS 375 (375)
Q Consensus 365 ~dg~v~iw~~~ 375 (375)
.||.|.+|+++
T Consensus 260 edg~i~~w~mn 270 (404)
T KOG1409|consen 260 EDGGIVVWNMN 270 (404)
T ss_pred CCCeEEEEecc
Confidence 99999999974
No 238
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.69 E-value=1.3e-12 Score=109.59 Aligned_cols=274 Identities=16% Similarity=0.198 Sum_probs=173.0
Q ss_pred CcEEEEec--ccCce--eeEeeecCccEEEEEEeCCCCeEEEEcC----CCeEEEEECCCC-CcccccccccCCCcceeE
Q 017194 38 GCICWFDL--RSKDV--QLVTDVGNGPVTSLCFKSGNEDIIYVSS----GKEVKSFDVHMP-ASWRPLESYNYNKEEINQ 108 (375)
Q Consensus 38 ~~i~iw~~--~~~~~--~~~~~~~~~~v~~l~~~~~~~~l~~~~~----d~~i~iwd~~~~-~~~~~~~~~~~~~~~v~~ 108 (375)
+.|.+|++ ++++. +.... ......-++++|++++|.++.. ++.|..|++... ..+..+............
T Consensus 13 ~gI~~~~~d~~~g~l~~~~~~~-~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~ 91 (345)
T PF10282_consen 13 GGIYVFRFDEETGTLTLVQTVA-EGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCH 91 (345)
T ss_dssp TEEEEEEEETTTTEEEEEEEEE-ESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEE
T ss_pred CcEEEEEEcCCCCCceEeeeec-CCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEE
Confidence 67888888 33433 22222 3455677899999999988876 468999998764 344454444323455678
Q ss_pred EEEcCCCCeEEEEe-CCCcEEEEeCcC-ceeee---eEec---------CcccceeEEEEeeCCCcEEEEeecCCeEEEe
Q 017194 109 IVCNPKSSFLACAD-DGGDVKIIDIRQ-HCLYK---SLRA---------GHSSICSSVQFIPWKPWEVISGGLDSKLVMW 174 (375)
Q Consensus 109 ~~~~~~~~~l~~~~-~dg~i~iwd~~~-~~~~~---~~~~---------~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~w 174 (375)
++++|++++|+++. .+|.|.++++.. +.... .+.. .......++.++|++++++++.-....|.+|
T Consensus 92 i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~ 171 (345)
T PF10282_consen 92 IAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVY 171 (345)
T ss_dssp EEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEE
T ss_pred EEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEE
Confidence 99999999998887 589999999986 33322 2210 1123467899999999555554456689999
Q ss_pred eCCCCCc-c---eEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEe-cCCcEEEEeCCCcceeeccccc
Q 017194 175 DFSKGRP-N---KIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAK-GDGVVDVINIESELNISRSKST 249 (375)
Q Consensus 175 d~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~ 249 (375)
++..... + ..+... .....+.++|+| +++++++.. .++.|.+|++....-..
T Consensus 172 ~~~~~~~~l~~~~~~~~~------------~G~GPRh~~f~p------dg~~~Yv~~e~s~~v~v~~~~~~~g~~----- 228 (345)
T PF10282_consen 172 DIDDDTGKLTPVDSIKVP------------PGSGPRHLAFSP------DGKYAYVVNELSNTVSVFDYDPSDGSL----- 228 (345)
T ss_dssp EE-TTS-TEEEEEEEECS------------TTSSEEEEEE-T------TSSEEEEEETTTTEEEEEEEETTTTEE-----
T ss_pred EEeCCCceEEEeeccccc------------cCCCCcEEEEcC------CcCEEEEecCCCCcEEEEeecccCCce-----
Confidence 9987652 2 223322 346678999999 788877665 56789999887211000
Q ss_pred CCCCCCceeecccccceeeeeeeecCCcceeEeeeeec---CCCccEEEEEEeecCCCCcEEEEec-CCCeEEEEeCCC-
Q 017194 250 TKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVG---GHTAAASCVAFSMFGERGKYLISGG-NDKLVKVWDCSR- 324 (375)
Q Consensus 250 ~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~v~~~~~s~~~~~~~~l~s~~-~dg~i~iwd~~~- 324 (375)
...+.+..+. ........++++ |||++|.++. .++.|.+|++..
T Consensus 229 ----------------------------~~~~~~~~~~~~~~~~~~~~~i~is---pdg~~lyvsnr~~~sI~vf~~d~~ 277 (345)
T PF10282_consen 229 ----------------------------TEIQTISTLPEGFTGENAPAEIAIS---PDGRFLYVSNRGSNSISVFDLDPA 277 (345)
T ss_dssp ----------------------------EEEEEEESCETTSCSSSSEEEEEE----TTSSEEEEEECTTTEEEEEEECTT
T ss_pred ----------------------------eEEEEeeeccccccccCCceeEEEe---cCCCEEEEEeccCCEEEEEEEecC
Confidence 0011111111 112367889999 9999887765 477899999943
Q ss_pred -ceeeeecchhhhhhhhcccccceeeeeecCCCCCcEEEee-CCCeEEEEec
Q 017194 325 -FQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCD-TSKVVKVYSI 374 (375)
Q Consensus 325 -~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~-~dg~v~iw~~ 374 (375)
++. ..+............++++| +|++|+++. .++.|.+|++
T Consensus 278 ~g~l-------~~~~~~~~~G~~Pr~~~~s~-~g~~l~Va~~~s~~v~vf~~ 321 (345)
T PF10282_consen 278 TGTL-------TLVQTVPTGGKFPRHFAFSP-DGRYLYVANQDSNTVSVFDI 321 (345)
T ss_dssp TTTE-------EEEEEEEESSSSEEEEEE-T-TSSEEEEEETTTTEEEEEEE
T ss_pred CCce-------EEEEEEeCCCCCccEEEEeC-CCCEEEEEecCCCeEEEEEE
Confidence 221 12222222334478899999 999988876 6678999875
No 239
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.67 E-value=1.3e-14 Score=110.25 Aligned_cols=156 Identities=19% Similarity=0.283 Sum_probs=111.5
Q ss_pred eEEEEecCCCCEEEEeCC----------CCcEEEEeccc-CceeeEeee-cCccEEEEEEeCCCCeEEEE--cCCCeEEE
Q 017194 19 TCCIASRDRPGFVASSGE----------DGCICWFDLRS-KDVQLVTDV-GNGPVTSLCFKSGNEDIIYV--SSGKEVKS 84 (375)
Q Consensus 19 ~~~~~~~~~~~~l~s~~~----------d~~i~iw~~~~-~~~~~~~~~-~~~~v~~l~~~~~~~~l~~~--~~d~~i~i 84 (375)
..+.|+|+ |++|+.-.. -+...||.++. +.....+.. ..++|.+++|+|+|+.+++. ..++.|.+
T Consensus 9 ~~~~W~~~-G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~l 87 (194)
T PF08662_consen 9 AKLHWQPS-GDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTL 87 (194)
T ss_pred EEEEeccc-CCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEE
Confidence 35789998 666553322 13456666532 233444443 34579999999999987655 34679999
Q ss_pred EECCCCCcccccccccCCCcceeEEEEcCCCCeEEEEeC---CCcEEEEeCcCceeeeeEecCcccceeEEEEeeCCCcE
Q 017194 85 FDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADD---GGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWE 161 (375)
Q Consensus 85 wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 161 (375)
||++ ...+..+. ...+..+.|+|+|++|++++. .|.|.+||+++.+.+..+. |. .+..++|+|+|+ +
T Consensus 88 yd~~----~~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~--~~-~~t~~~WsPdGr-~ 157 (194)
T PF08662_consen 88 YDVK----GKKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFE--HS-DATDVEWSPDGR-Y 157 (194)
T ss_pred EcCc----ccEeEeec--CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccc--cC-cEEEEEEcCCCC-E
Confidence 9997 23333332 467889999999999998874 4679999999888887776 44 478999999999 5
Q ss_pred EEEeec------CCeEEEeeCCCCCcceEEe
Q 017194 162 VISGGL------DSKLVMWDFSKGRPNKIVN 186 (375)
Q Consensus 162 l~~~~~------d~~i~~wd~~~~~~~~~~~ 186 (375)
|+++.. |..++||+.. |+.+....
T Consensus 158 ~~ta~t~~r~~~dng~~Iw~~~-G~~l~~~~ 187 (194)
T PF08662_consen 158 LATATTSPRLRVDNGFKIWSFQ-GRLLYKKP 187 (194)
T ss_pred EEEEEeccceeccccEEEEEec-CeEeEecc
Confidence 666653 7889999985 66665554
No 240
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.67 E-value=2.4e-13 Score=112.20 Aligned_cols=315 Identities=12% Similarity=0.096 Sum_probs=199.4
Q ss_pred CceeEEEEecCCCCEEEEeCCCCcEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEEc-----CC-----CeEEEE
Q 017194 16 ATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVS-----SG-----KEVKSF 85 (375)
Q Consensus 16 ~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~-----~d-----~~i~iw 85 (375)
.+++..+++++ |+++|.+.. ..++|++..++..+.+... ..+.++.|+|-+.+|.+-- .+ -.+.+|
T Consensus 35 ~~~~v~~~S~~-G~lfA~~~~-~~v~i~~~~~~~~~lt~~~--~~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~ 110 (566)
T KOG2315|consen 35 RPCNVFAYSNN-GRLFAYSDN-QVVKVFEIATLKVVLCVEL--KKTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVLVY 110 (566)
T ss_pred CcceeEEEcCC-CcEEEEEcC-CeEEEEEccCCcEEEEecc--ceeeeeeecccccccccccccccccCCCCCCCceeee
Confidence 44667788887 888887665 5899999988864444432 3889999999999886621 12 367899
Q ss_pred ECCCCCcccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCceeeeeEecCcccceeEEEEeeCCC-cEEEE
Q 017194 86 DVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKP-WEVIS 164 (375)
Q Consensus 86 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~l~~ 164 (375)
+++++.....+..- .... ++..|++|..+.+-- ..+.+++|++...+.+..- -|...++.+.++|... ..+++
T Consensus 111 ~vet~~~~s~~q~k--~Q~~-W~~qfs~dEsl~arl-v~nev~f~~~~~f~~~~~k--l~~~~i~~f~lSpgp~~~~vAv 184 (566)
T KOG2315|consen 111 NVETGVQRSQIQKK--MQNG-WVPQFSIDESLAARL-VSNEVQFYDLGSFKTIQHK--LSVSGITMLSLSPGPEPPFVAV 184 (566)
T ss_pred eeccceehhheehh--hhcC-cccccccchhhhhhh-hcceEEEEecCCccceeee--eeccceeeEEecCCCCCceEEE
Confidence 99974322222221 1222 588899887654332 4478999999875443332 3677899999999843 33443
Q ss_pred -----eecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEec-----------
Q 017194 165 -----GGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKG----------- 228 (375)
Q Consensus 165 -----~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~----------- 228 (375)
.+.-+.|++|.......-..+. ...+....--.+.|++. ...+|+.++.
T Consensus 185 yvPe~kGaPa~vri~~~~~~~~~~~~a----------~ksFFkadkvqm~WN~~-----gt~LLvLastdVDktn~SYYG 249 (566)
T KOG2315|consen 185 YVPEKKGAPASVRIYKYPEEGQHQPVA----------NKSFFKADKVQMKWNKL-----GTALLVLASTDVDKTNASYYG 249 (566)
T ss_pred EccCCCCCCcEEEEeccccccccchhh----------hccccccceeEEEeccC-----CceEEEEEEEeecCCCccccc
Confidence 3455689999876322211111 00001122234556552 2223333332
Q ss_pred CCcEEEEeCCCcceeecccccCCCCCCceeecccccceeeeeeeecCC----cceeEeeeeecCCCccEEEEEEeecCCC
Q 017194 229 DGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSG----GKRLHLDYSVGGHTAAASCVAFSMFGER 304 (375)
Q Consensus 229 dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 304 (375)
+..++++++..... ........++..+.|+|+|+.++++..+.... +.....+..+ ..++-+++-|+ |.
T Consensus 250 Eq~Lyll~t~g~s~--~V~L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~~v~df--~egpRN~~~fn---p~ 322 (566)
T KOG2315|consen 250 EQTLYLLATQGESV--SVPLLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGKPVFDF--PEGPRNTAFFN---PH 322 (566)
T ss_pred cceEEEEEecCceE--EEecCCCCCceEEEECCCCCEEEEEEecccceEEEEcCCCCEeEeC--CCCCccceEEC---CC
Confidence 34688888773322 23334457899999999999988765443322 1122333333 36777889999 89
Q ss_pred CcEEEEecC---CCeEEEEeCCCceeeeecchhhhhhhhcccccceeeeeecCCCCCcEEEee------CCCeEEEEec
Q 017194 305 GKYLISGGN---DKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCD------TSKVVKVYSI 374 (375)
Q Consensus 305 ~~~l~s~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~------~dg~v~iw~~ 374 (375)
|++|+.+|. .|.|-|||+.+. +++..+..- .-+-+.|+| ||++|+|+. .|+.++||++
T Consensus 323 g~ii~lAGFGNL~G~mEvwDv~n~---------K~i~~~~a~--~tt~~eW~P-dGe~flTATTaPRlrvdNg~Kiwhy 389 (566)
T KOG2315|consen 323 GNIILLAGFGNLPGDMEVWDVPNR---------KLIAKFKAA--NTTVFEWSP-DGEYFLTATTAPRLRVDNGIKIWHY 389 (566)
T ss_pred CCEEEEeecCCCCCceEEEeccch---------hhccccccC--CceEEEEcC-CCcEEEEEeccccEEecCCeEEEEe
Confidence 999988776 478999999997 555444333 234578999 999999986 4788999986
No 241
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.66 E-value=2.6e-14 Score=108.52 Aligned_cols=150 Identities=13% Similarity=0.224 Sum_probs=108.4
Q ss_pred EEEEEeCCCCeEEEEcC----------CCeEEEEECCCCCcccccccccC-CCcceeEEEEcCCCCeEEEE--eCCCcEE
Q 017194 62 TSLCFKSGNEDIIYVSS----------GKEVKSFDVHMPASWRPLESYNY-NKEEINQIVCNPKSSFLACA--DDGGDVK 128 (375)
Q Consensus 62 ~~l~~~~~~~~l~~~~~----------d~~i~iwd~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~--~~dg~i~ 128 (375)
..+.|+|+|++|+.-.. -+...+|.++.... ....+.. ..++|.+++|+|+++.+++. ..++.|.
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~--~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~ 86 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNI--PVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVT 86 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCC--ccceeeccCCCceEEEEECcCCCEEEEEEccCCcccE
Confidence 45789999987765443 13456666543221 2222211 24579999999999987654 3567999
Q ss_pred EEeCcCceeeeeEecCcccceeEEEEeeCCCcEEEEeec---CCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCce
Q 017194 129 IIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGL---DSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFV 205 (375)
Q Consensus 129 iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~---d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 205 (375)
+||++ ++.+..+. ...++.+.|+|+|+ ++++++. .|.|.+||.++.+.+...+. ..+
T Consensus 87 lyd~~-~~~i~~~~---~~~~n~i~wsP~G~-~l~~~g~~n~~G~l~~wd~~~~~~i~~~~~---------------~~~ 146 (194)
T PF08662_consen 87 LYDVK-GKKIFSFG---TQPRNTISWSPDGR-FLVLAGFGNLNGDLEFWDVRKKKKISTFEH---------------SDA 146 (194)
T ss_pred EEcCc-ccEeEeec---CCCceEEEECCCCC-EEEEEEccCCCcEEEEEECCCCEEeecccc---------------CcE
Confidence 99996 66666664 45778999999999 6777653 46799999998877766652 357
Q ss_pred eEEeecCCccccCCCCEEEEEec------CCcEEEEeCCC
Q 017194 206 HAIAIPDADMLDKTNKICVVAKG------DGVVDVINIES 239 (375)
Q Consensus 206 ~~~~~~~~~~~~~~~~~l~~~~~------dg~i~i~d~~~ 239 (375)
..++|+| +|++++++.. |+.++||+...
T Consensus 147 t~~~WsP------dGr~~~ta~t~~r~~~dng~~Iw~~~G 180 (194)
T PF08662_consen 147 TDVEWSP------DGRYLATATTSPRLRVDNGFKIWSFQG 180 (194)
T ss_pred EEEEEcC------CCCEEEEEEeccceeccccEEEEEecC
Confidence 8999999 8999999874 78899999864
No 242
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.65 E-value=2.7e-12 Score=107.65 Aligned_cols=254 Identities=18% Similarity=0.257 Sum_probs=164.5
Q ss_pred ceeEEEEecCCCCEEEEeCC----CCcEEEEecccC--c--eeeEeeecCccEEEEEEeCCCCeEEEEcC-CCeEEEEEC
Q 017194 17 TATCCIASRDRPGFVASSGE----DGCICWFDLRSK--D--VQLVTDVGNGPVTSLCFKSGNEDIIYVSS-GKEVKSFDV 87 (375)
Q Consensus 17 ~i~~~~~~~~~~~~l~s~~~----d~~i~iw~~~~~--~--~~~~~~~~~~~v~~l~~~~~~~~l~~~~~-d~~i~iwd~ 87 (375)
...-++++|+ +++|.+... ++.|..|.+... + .+............++++|++++|+++.. +|.+.++++
T Consensus 38 ~Ps~l~~~~~-~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l 116 (345)
T PF10282_consen 38 NPSWLAVSPD-GRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPL 116 (345)
T ss_dssp SECCEEE-TT-SSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred CCceEEEEeC-CCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEc
Confidence 3455888998 777777655 578999998764 2 23333334556678999999999998875 789999999
Q ss_pred CCCCccccc-cccc----------CCCcceeEEEEcCCCCeEEEEe-CCCcEEEEeCcCce--e--eeeEecCcccceeE
Q 017194 88 HMPASWRPL-ESYN----------YNKEEINQIVCNPKSSFLACAD-DGGDVKIIDIRQHC--L--YKSLRAGHSSICSS 151 (375)
Q Consensus 88 ~~~~~~~~~-~~~~----------~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~--~--~~~~~~~~~~~v~~ 151 (375)
.....+... .... .......++.++|+++++++.. ....|.+|++.... . ...+........+.
T Consensus 117 ~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh 196 (345)
T PF10282_consen 117 DDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRH 196 (345)
T ss_dssp CTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEE
T ss_pred cCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcE
Confidence 864222222 1110 1134567899999999988765 34579999987654 2 22333234567899
Q ss_pred EEEeeCCCcEEEEeecCCeEEEeeCC--CCCc--ceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEe
Q 017194 152 VQFIPWKPWEVISGGLDSKLVMWDFS--KGRP--NKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAK 227 (375)
Q Consensus 152 ~~~~~~~~~~l~~~~~d~~i~~wd~~--~~~~--~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~ 227 (375)
+.|+|++++++++...++.|.++++. .++. +..+... |. ..........|+++| ++++|+++.
T Consensus 197 ~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~-~~------~~~~~~~~~~i~isp------dg~~lyvsn 263 (345)
T PF10282_consen 197 LAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTL-PE------GFTGENAPAEIAISP------DGRFLYVSN 263 (345)
T ss_dssp EEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESC-ET------TSCSSSSEEEEEE-T------TSSEEEEEE
T ss_pred EEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeec-cc------cccccCCceeEEEec------CCCEEEEEe
Confidence 99999999766777788999999998 3322 2222211 00 000113678899999 899888876
Q ss_pred -cCCcEEEEeCCCcceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCc
Q 017194 228 -GDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGK 306 (375)
Q Consensus 228 -~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~ 306 (375)
..+.|.+|++... ...++.+..+.......+.++++ |+|+
T Consensus 264 r~~~sI~vf~~d~~------------------------------------~g~l~~~~~~~~~G~~Pr~~~~s---~~g~ 304 (345)
T PF10282_consen 264 RGSNSISVFDLDPA------------------------------------TGTLTLVQTVPTGGKFPRHFAFS---PDGR 304 (345)
T ss_dssp CTTTEEEEEEECTT------------------------------------TTTEEEEEEEEESSSSEEEEEE----TTSS
T ss_pred ccCCEEEEEEEecC------------------------------------CCceEEEEEEeCCCCCccEEEEe---CCCC
Confidence 5678999999531 11123333333334457899999 9999
Q ss_pred EEEEec-CCCeEEEEeCC
Q 017194 307 YLISGG-NDKLVKVWDCS 323 (375)
Q Consensus 307 ~l~s~~-~dg~i~iwd~~ 323 (375)
+|+++. .++.|.+|++.
T Consensus 305 ~l~Va~~~s~~v~vf~~d 322 (345)
T PF10282_consen 305 YLYVANQDSNTVSVFDID 322 (345)
T ss_dssp EEEEEETTTTEEEEEEEE
T ss_pred EEEEEecCCCeEEEEEEe
Confidence 988776 56789999774
No 243
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.63 E-value=2.3e-13 Score=118.15 Aligned_cols=204 Identities=13% Similarity=0.123 Sum_probs=136.7
Q ss_pred CCCCeeeecCCCceeEEEEecCCCCEEEEeCCC---CcEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEE-cCCC
Q 017194 5 EAKPRRLRGHKATATCCIASRDRPGFVASSGED---GCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYV-SSGK 80 (375)
Q Consensus 5 ~~~~~~l~~h~~~i~~~~~~~~~~~~l~s~~~d---~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~~d~ 80 (375)
+...+.+..+...+.+.+|+|+ +++|+.+..+ ..|.+||+.+++... +..+...+.+++|+|+++.|+.. +.++
T Consensus 179 g~~~~~l~~~~~~~~~p~~Spd-g~~la~~~~~~~~~~i~v~d~~~g~~~~-~~~~~~~~~~~~~spDg~~l~~~~~~~~ 256 (417)
T TIGR02800 179 GANPQTITRSREPILSPAWSPD-GQKLAYVSFESGKPEIYVQDLATGQREK-VASFPGMNGAPAFSPDGSKLAVSLSKDG 256 (417)
T ss_pred CCCCEEeecCCCceecccCCCC-CCEEEEEEcCCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCEEEEEECCCC
Confidence 4556677777778999999999 7888766543 479999998876533 33455667789999999987654 4333
Q ss_pred --eEEEEECCCCCcccccccccCCCcceeEEEEcCCCCeEEEEeCC-C--cEEEEeCcCceeeeeEecCcccceeEEEEe
Q 017194 81 --EVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDG-G--DVKIIDIRQHCLYKSLRAGHSSICSSVQFI 155 (375)
Q Consensus 81 --~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-g--~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~ 155 (375)
.|++||+.++.. ..+. .+........|+|+++.|+..+.. + .|+++|+.+++.. .+. .+......+.|+
T Consensus 257 ~~~i~~~d~~~~~~-~~l~---~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~-~l~-~~~~~~~~~~~s 330 (417)
T TIGR02800 257 NPDIYVMDLDGKQL-TRLT---NGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVR-RLT-FRGGYNASPSWS 330 (417)
T ss_pred CccEEEEECCCCCE-EECC---CCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEE-Eee-cCCCCccCeEEC
Confidence 688999886543 2222 223445567899999988776543 3 5888888766543 344 355667788999
Q ss_pred eCCCcEEEEeecCC---eEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCC--
Q 017194 156 PWKPWEVISGGLDS---KLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDG-- 230 (375)
Q Consensus 156 ~~~~~~l~~~~~d~---~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg-- 230 (375)
|+++ .++.++.++ .|.+||+.++.. ..+.. ........|+| +++.|+..+.++
T Consensus 331 pdg~-~i~~~~~~~~~~~i~~~d~~~~~~-~~l~~--------------~~~~~~p~~sp------dg~~l~~~~~~~~~ 388 (417)
T TIGR02800 331 PDGD-LIAFVHREGGGFNIAVMDLDGGGE-RVLTD--------------TGLDESPSFAP------NGRMILYATTRGGR 388 (417)
T ss_pred CCCC-EEEEEEccCCceEEEEEeCCCCCe-EEccC--------------CCCCCCceECC------CCCEEEEEEeCCCc
Confidence 9998 566666555 788999887543 22221 11223457887 788887777654
Q ss_pred -cEEEEeCC
Q 017194 231 -VVDVINIE 238 (375)
Q Consensus 231 -~i~i~d~~ 238 (375)
.+.+.+..
T Consensus 389 ~~l~~~~~~ 397 (417)
T TIGR02800 389 GVLGLVSTD 397 (417)
T ss_pred EEEEEEECC
Confidence 34555543
No 244
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.62 E-value=1.6e-13 Score=104.21 Aligned_cols=252 Identities=14% Similarity=0.080 Sum_probs=172.2
Q ss_pred CCceeEEEEec--CCCC-EEEEeCCCCcEEEEecccCceeeEeeec---C---ccEEEEEEeCCCCeEEEEcCCCeEEEE
Q 017194 15 KATATCCIASR--DRPG-FVASSGEDGCICWFDLRSKDVQLVTDVG---N---GPVTSLCFKSGNEDIIYVSSGKEVKSF 85 (375)
Q Consensus 15 ~~~i~~~~~~~--~~~~-~l~s~~~d~~i~iw~~~~~~~~~~~~~~---~---~~v~~l~~~~~~~~l~~~~~d~~i~iw 85 (375)
++.+..|.|.. .++. .++-+..+|.|.++.....+....+++- . ....++.|++.+..++++-.+|.+.+-
T Consensus 69 ts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~lslD~~~~~~~i~vs~s~G~~~~v 148 (339)
T KOG0280|consen 69 TSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEALSLDISTSGTKIFVSDSRGSISGV 148 (339)
T ss_pred ccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhheeeeEEEeeccCceEEEEcCCCcEEEE
Confidence 34566666652 3345 5677788899999987655443333321 1 124567889999999999889998855
Q ss_pred ECCCCCcccccccccCCCcceeEEEEcCC-CCeEEEEeCCCcEEEEeCc-Cceeeee-EecCcccceeEEEEeeCCCcEE
Q 017194 86 DVHMPASWRPLESYNYNKEEINQIVCNPK-SSFLACADDGGDVKIIDIR-QHCLYKS-LRAGHSSICSSVQFIPWKPWEV 162 (375)
Q Consensus 86 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~iwd~~-~~~~~~~-~~~~~~~~v~~~~~~~~~~~~l 162 (375)
+.... .++..+..+.|+-++....|+.. .+.+++|++|+.+..||++ .++.+.. .+ -|...|.+|.-+|..+..+
T Consensus 149 ~~t~~-~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~k-vH~~GV~SI~ss~~~~~~I 226 (339)
T KOG0280|consen 149 YETEM-VLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSK-VHTSGVVSIYSSPPKPTYI 226 (339)
T ss_pred eccee-eeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeecce-eeecceEEEecCCCCCceE
Confidence 54422 35666788889999999999874 4688999999999999998 3333333 34 6888999999998877789
Q ss_pred EEeecCCeEEEeeCC-CCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCcc
Q 017194 163 ISGGLDSKLVMWDFS-KGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESEL 241 (375)
Q Consensus 163 ~~~~~d~~i~~wd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~ 241 (375)
++|+.|-.|++||.+ -++++..-..+ +.|..+..+|. ....+..++.-+-.+|.+...+.
T Consensus 227 ~TGsYDe~i~~~DtRnm~kPl~~~~v~--------------GGVWRi~~~p~-----~~~~lL~~CMh~G~ki~~~~~~~ 287 (339)
T KOG0280|consen 227 ATGSYDECIRVLDTRNMGKPLFKAKVG--------------GGVWRIKHHPE-----IFHRLLAACMHNGAKILDSSDKV 287 (339)
T ss_pred EEeccccceeeeehhcccCccccCccc--------------cceEEEEecch-----hhhHHHHHHHhcCceEEEecccc
Confidence 999999999999999 46776665533 78999999995 33333444444446676666432
Q ss_pred eeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEec-CCCeEE-E
Q 017194 242 NISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGG-NDKLVK-V 319 (375)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~-~dg~i~-i 319 (375)
... .......+.|.+-...-.|. ....+|||++ .|+.++ +
T Consensus 288 ~e~-----------------------------------~~~~~s~~~hdSl~YG~DWd---~~~~~lATCsFYDk~~~~~ 329 (339)
T KOG0280|consen 288 LEF-----------------------------------QIVLPSDKIHDSLCYGGDWD---SKDSFLATCSFYDKKIRQL 329 (339)
T ss_pred cch-----------------------------------heeeeccccccceeeccccc---cccceeeeeeccccceeee
Confidence 110 01233555666666666775 4455788875 477755 7
Q ss_pred EeCCCc
Q 017194 320 WDCSRF 325 (375)
Q Consensus 320 wd~~~~ 325 (375)
|-.-++
T Consensus 330 Wl~~t~ 335 (339)
T KOG0280|consen 330 WLHITG 335 (339)
T ss_pred eeeccC
Confidence 765544
No 245
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.61 E-value=9.5e-14 Score=114.87 Aligned_cols=243 Identities=12% Similarity=0.163 Sum_probs=163.6
Q ss_pred cCccEEEEEEeCCCCeEEE-EcCCCeEEEEECCCCCcccccccccCCCcc-eeEEEEcCCCCeEEEEeCCCcEEEEeCcC
Q 017194 57 GNGPVTSLCFKSGNEDIIY-VSSGKEVKSFDVHMPASWRPLESYNYNKEE-INQIVCNPKSSFLACADDGGDVKIIDIRQ 134 (375)
Q Consensus 57 ~~~~v~~l~~~~~~~~l~~-~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 134 (375)
+...-+.|..+|||+++++ |...-.|++||+..-. ++.-..+ ... |.-.-.+.|-..++.-..|.+|.+..- .
T Consensus 50 ~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLS-LKFERhl---Dae~V~feiLsDD~SK~v~L~~DR~IefHak-~ 124 (703)
T KOG2321|consen 50 MPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLS-LKFERHL---DAEVVDFEILSDDYSKSVFLQNDRTIEFHAK-Y 124 (703)
T ss_pred CccccceeEecCCCcEEEEecccCCceEEEEcccce-eeeeecc---cccceeEEEeccchhhheEeecCceeeehhh-c
Confidence 5677788999999998655 5556799999997421 1211222 233 333344445555666667777766542 2
Q ss_pred ceeeeeEecCcccceeEEEEeeCCCcEEEEeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCc
Q 017194 135 HCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDAD 214 (375)
Q Consensus 135 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 214 (375)
|.. ..++ -...-.+|+++.-.. -|..++....|+-+++..|..+..+... ...++++.+++
T Consensus 125 G~h-y~~R--IP~~GRDm~y~~~sc-Dly~~gsg~evYRlNLEqGrfL~P~~~~-------------~~~lN~v~in~-- 185 (703)
T KOG2321|consen 125 GRH-YRTR--IPKFGRDMKYHKPSC-DLYLVGSGSEVYRLNLEQGRFLNPFETD-------------SGELNVVSINE-- 185 (703)
T ss_pred Cee-eeee--cCcCCccccccCCCc-cEEEeecCcceEEEEccccccccccccc-------------cccceeeeecC--
Confidence 221 1121 123446677765444 2555555668999999999998888754 47899999999
Q ss_pred cccCCCCEEEEEecCCcEEEEeCCCcceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCC-----
Q 017194 215 MLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGH----- 289 (375)
Q Consensus 215 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~----- 289 (375)
-..+|++|+.+|.+.+||.++......+. ....+..|
T Consensus 186 ----~hgLla~Gt~~g~VEfwDpR~ksrv~~l~----------------------------------~~~~v~s~pg~~~ 227 (703)
T KOG2321|consen 186 ----EHGLLACGTEDGVVEFWDPRDKSRVGTLD----------------------------------AASSVNSHPGGDA 227 (703)
T ss_pred ----ccceEEecccCceEEEecchhhhhheeee----------------------------------cccccCCCccccc
Confidence 58899999999999999999753322211 11122233
Q ss_pred CccEEEEEEeecCCCCcEEEEecCCCeEEEEeCCCceeeeecchhhhhhhhcccccceeeeeecCCCCC-cEEEeeCCCe
Q 017194 290 TAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESE-NLVVCDTSKV 368 (375)
Q Consensus 290 ~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~l~s~~~dg~ 368 (375)
...|+++.|+ .+|-.+++|..+|.+.|||++..+ +++..-.+..-+|..+.|.+.+++ .++|. ....
T Consensus 228 ~~svTal~F~---d~gL~~aVGts~G~v~iyDLRa~~--------pl~~kdh~~e~pi~~l~~~~~~~q~~v~S~-Dk~~ 295 (703)
T KOG2321|consen 228 APSVTALKFR---DDGLHVAVGTSTGSVLIYDLRASK--------PLLVKDHGYELPIKKLDWQDTDQQNKVVSM-DKRI 295 (703)
T ss_pred cCcceEEEec---CCceeEEeeccCCcEEEEEcccCC--------ceeecccCCccceeeecccccCCCceEEec-chHH
Confidence 2359999999 789999999999999999999985 444455556668899999875443 34444 4567
Q ss_pred EEEEe
Q 017194 369 VKVYS 373 (375)
Q Consensus 369 v~iw~ 373 (375)
++|||
T Consensus 296 ~kiWd 300 (703)
T KOG2321|consen 296 LKIWD 300 (703)
T ss_pred hhhcc
Confidence 89997
No 246
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.61 E-value=4.8e-13 Score=116.16 Aligned_cols=176 Identities=15% Similarity=0.198 Sum_probs=119.8
Q ss_pred CcEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEEcCC---CeEEEEECCCCCcccccccccCCCcceeEEEEcCC
Q 017194 38 GCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSG---KEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPK 114 (375)
Q Consensus 38 ~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d---~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 114 (375)
..|.++|..... .+.+..+...+...+|+|+|++|+.+..+ ..|++||+.+++. ..+.. +...+..++|+||
T Consensus 170 ~~l~~~d~~g~~-~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~-~~~~~---~~~~~~~~~~spD 244 (417)
T TIGR02800 170 YELQVADYDGAN-PQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQR-EKVAS---FPGMNGAPAFSPD 244 (417)
T ss_pred ceEEEEcCCCCC-CEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCE-EEeec---CCCCccceEECCC
Confidence 458888876443 45555567788999999999999987654 4899999987643 22222 2455667899999
Q ss_pred CCeEEEE-eCCC--cEEEEeCcCceeeeeEecCcccceeEEEEeeCCCcEEEEeecCC--eEEEeeCCCCCcceEEecCC
Q 017194 115 SSFLACA-DDGG--DVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDS--KLVMWDFSKGRPNKIVNFGL 189 (375)
Q Consensus 115 ~~~l~~~-~~dg--~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~--~i~~wd~~~~~~~~~~~~~~ 189 (375)
++.|+.. +.++ .|++||+.+++.. .+. .+........|+|++++++++...++ .|+++|+.+++. ..+...
T Consensus 245 g~~l~~~~~~~~~~~i~~~d~~~~~~~-~l~-~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~-~~l~~~- 320 (417)
T TIGR02800 245 GSKLAVSLSKDGNPDIYVMDLDGKQLT-RLT-NGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEV-RRLTFR- 320 (417)
T ss_pred CCEEEEEECCCCCccEEEEECCCCCEE-ECC-CCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCE-EEeecC-
Confidence 9877654 4443 5899998876543 333 34445567789999984334443333 688888876653 333322
Q ss_pred CCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCC---cEEEEeCCCc
Q 017194 190 PENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDG---VVDVINIESE 240 (375)
Q Consensus 190 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg---~i~i~d~~~~ 240 (375)
........|+| ++++++.++.++ .|.+||+.++
T Consensus 321 ------------~~~~~~~~~sp------dg~~i~~~~~~~~~~~i~~~d~~~~ 356 (417)
T TIGR02800 321 ------------GGYNASPSWSP------DGDLIAFVHREGGGFNIAVMDLDGG 356 (417)
T ss_pred ------------CCCccCeEECC------CCCEEEEEEccCCceEEEEEeCCCC
Confidence 24456778888 799998888765 7888888763
No 247
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.61 E-value=2.5e-12 Score=106.22 Aligned_cols=314 Identities=11% Similarity=0.040 Sum_probs=201.0
Q ss_pred eEEEEecCCCCEEEEeCCCCcEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEEcC-----------CCeEEEEEC
Q 017194 19 TCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSS-----------GKEVKSFDV 87 (375)
Q Consensus 19 ~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~-----------d~~i~iwd~ 87 (375)
+-+.|||. |.+|+|-...| |.+|--++...++.+. | ..|.-+.|||..++|++-+. ...++|||+
T Consensus 214 tyv~wSP~-GTYL~t~Hk~G-I~lWGG~~f~r~~RF~-H-p~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI 289 (698)
T KOG2314|consen 214 TYVRWSPK-GTYLVTFHKQG-IALWGGESFDRIQRFY-H-PGVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDI 289 (698)
T ss_pred eeEEecCC-ceEEEEEeccc-eeeecCccHHHHHhcc-C-CCceeeecCCccceEEEecCCccccCcccCCCceEEEEEc
Confidence 45789999 99999998877 9999877666666665 3 35788999999999999763 258999999
Q ss_pred CCCCcccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCceeeeeEecCcccceeEEEEeeCCCcEEEEeec
Q 017194 88 HMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGL 167 (375)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~ 167 (375)
.+|...+.+..+......-.-+.||.|++++|.-.. ..|.||+..+..++..-. -.-..|....|+|.+. +||--..
T Consensus 290 ~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~-~sisIyEtpsf~lld~Ks-lki~gIr~FswsP~~~-llAYwtp 366 (698)
T KOG2314|consen 290 ATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTG-NSISIYETPSFMLLDKKS-LKISGIRDFSWSPTSN-LLAYWTP 366 (698)
T ss_pred cccchhcceeccCCCccccceEEeccCCceeEEecc-ceEEEEecCceeeecccc-cCCccccCcccCCCcc-eEEEEcc
Confidence 999877776665443333445789999999998766 569999976643332111 2245788899999986 5664332
Q ss_pred -----CCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEec----------CCcE
Q 017194 168 -----DSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKG----------DGVV 232 (375)
Q Consensus 168 -----d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~----------dg~i 232 (375)
-..+.+-.+.+++.++...+. .-.-..+.|-. +|.+|++--. -..+
T Consensus 367 e~~~~parvtL~evPs~~~iRt~nlf-------------nVsDckLhWQk------~gdyLcvkvdR~tK~~~~g~f~n~ 427 (698)
T KOG2314|consen 367 ETNNIPARVTLMEVPSKREIRTKNLF-------------NVSDCKLHWQK------SGDYLCVKVDRHTKSKVKGQFSNL 427 (698)
T ss_pred cccCCcceEEEEecCccceeeeccce-------------eeeccEEEecc------CCcEEEEEEEeeccccccceEeeE
Confidence 234566666666555544322 11112334433 5777665321 1235
Q ss_pred EEEeCCCcceeecccccCCCCCCceeecccccceeeeeeeecCC----------cceeEeeeeecCCCccEEEEEEeecC
Q 017194 233 DVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSG----------GKRLHLDYSVGGHTAAASCVAFSMFG 302 (375)
Q Consensus 233 ~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~v~~~~~s~~~ 302 (375)
.|+.++....+.. ..+....+-..++-|.|..+++........ .....++..+. ....+.+.|+
T Consensus 428 eIfrireKdIpve-~velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~d--k~~~N~vfws--- 501 (698)
T KOG2314|consen 428 EIFRIREKDIPVE-VVELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELD--KKFANTVFWS--- 501 (698)
T ss_pred EEEEeeccCCCce-eeecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhc--ccccceEEEc---
Confidence 5566554332221 122234556678889999888744333322 22223333333 2456789999
Q ss_pred CCCcEEEEe---cCCCeEEEEeCCCceeeeecchhhhhhhhcccccceeeeeecCCCCCcEEEeeC------CCeEEEEe
Q 017194 303 ERGKYLISG---GNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDT------SKVVKVYS 373 (375)
Q Consensus 303 ~~~~~l~s~---~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~------dg~v~iw~ 373 (375)
|.|++++.+ |..|.+.++|.... .+...-..-....+.+.|.| .|+|+++++. |..-++|+
T Consensus 502 PkG~fvvva~l~s~~g~l~F~D~~~a---------~~k~~~~~eh~~at~veWDP-tGRYvvT~ss~wrhk~d~GYri~t 571 (698)
T KOG2314|consen 502 PKGRFVVVAALVSRRGDLEFYDTDYA---------DLKDTASPEHFAATEVEWDP-TGRYVVTSSSSWRHKVDNGYRIFT 571 (698)
T ss_pred CCCcEEEEEEecccccceEEEecchh---------hhhhccCccccccccceECC-CCCEEEEeeehhhhccccceEEEE
Confidence 999998875 45789999999863 22222222223457789999 9999999874 44456665
Q ss_pred c
Q 017194 374 I 374 (375)
Q Consensus 374 ~ 374 (375)
+
T Consensus 572 f 572 (698)
T KOG2314|consen 572 F 572 (698)
T ss_pred e
Confidence 4
No 248
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.61 E-value=6.4e-13 Score=115.45 Aligned_cols=207 Identities=12% Similarity=0.091 Sum_probs=132.8
Q ss_pred CCCCCeeeecCCCceeEEEEecCCCCEEEEeCCC---CcEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEE-cCC
Q 017194 4 AEAKPRRLRGHKATATCCIASRDRPGFVASSGED---GCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYV-SSG 79 (375)
Q Consensus 4 ~~~~~~~l~~h~~~i~~~~~~~~~~~~l~s~~~d---~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~~d 79 (375)
.+...+.+..+...+....|+|| ++.|+..+.+ ..|.+|++.+++... +....+.+....|+|+|+.|+.. ..+
T Consensus 187 ~g~~~~~l~~~~~~~~~p~wSpD-G~~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~~g~~~~~~~SpDG~~la~~~~~~ 264 (430)
T PRK00178 187 DGARAVTLLQSREPILSPRWSPD-GKRIAYVSFEQKRPRIFVQNLDTGRREQ-ITNFEGLNGAPAWSPDGSKLAFVLSKD 264 (430)
T ss_pred CCCCceEEecCCCceeeeeECCC-CCEEEEEEcCCCCCEEEEEECCCCCEEE-ccCCCCCcCCeEECCCCCEEEEEEccC
Confidence 34556677778888999999999 7777665432 368999998886533 33334455678999999988754 344
Q ss_pred C--eEEEEECCCCCcccccccccCCCcceeEEEEcCCCCeEEEEeC-CC--cEEEEeCcCceeeeeEecCcccceeEEEE
Q 017194 80 K--EVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADD-GG--DVKIIDIRQHCLYKSLRAGHSSICSSVQF 154 (375)
Q Consensus 80 ~--~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg--~i~iwd~~~~~~~~~~~~~~~~~v~~~~~ 154 (375)
+ .|++||+.+++. ..+. .+........|+||++.|+..+. +| .|+++|+.+++...... .........|
T Consensus 265 g~~~Iy~~d~~~~~~-~~lt---~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~--~~~~~~~~~~ 338 (430)
T PRK00178 265 GNPEIYVMDLASRQL-SRVT---NHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTF--VGNYNARPRL 338 (430)
T ss_pred CCceEEEEECCCCCe-EEcc---cCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeec--CCCCccceEE
Confidence 4 688889987543 2222 23445667899999998876653 33 57788887776433222 2223345789
Q ss_pred eeCCCcEEEEeecCC--eEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecC---
Q 017194 155 IPWKPWEVISGGLDS--KLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGD--- 229 (375)
Q Consensus 155 ~~~~~~~l~~~~~d~--~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~d--- 229 (375)
+|++++++++...++ .|.+||+.+++. ..+... .......|+| +|+.++..+.+
T Consensus 339 Spdg~~i~~~~~~~~~~~l~~~dl~tg~~-~~lt~~--------------~~~~~p~~sp------dg~~i~~~~~~~g~ 397 (430)
T PRK00178 339 SADGKTLVMVHRQDGNFHVAAQDLQRGSV-RILTDT--------------SLDESPSVAP------NGTMLIYATRQQGR 397 (430)
T ss_pred CCCCCEEEEEEccCCceEEEEEECCCCCE-EEccCC--------------CCCCCceECC------CCCEEEEEEecCCc
Confidence 999995434433333 588899887654 333211 1122447888 78888877654
Q ss_pred CcEEEEeCCC
Q 017194 230 GVVDVINIES 239 (375)
Q Consensus 230 g~i~i~d~~~ 239 (375)
..|.++++..
T Consensus 398 ~~l~~~~~~g 407 (430)
T PRK00178 398 GVLMLVSING 407 (430)
T ss_pred eEEEEEECCC
Confidence 2466666653
No 249
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.61 E-value=5.2e-13 Score=116.00 Aligned_cols=175 Identities=14% Similarity=0.163 Sum_probs=117.4
Q ss_pred cEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEEcCC---CeEEEEECCCCCcccccccccCCCcceeEEEEcCCC
Q 017194 39 CICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSG---KEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKS 115 (375)
Q Consensus 39 ~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d---~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 115 (375)
.|.++|.+.+. .+.+..+...+....|+|+|+.|+..+.+ ..|.+||+.+++. +.+... .+.+....|+|||
T Consensus 180 ~l~~~d~~g~~-~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~-~~l~~~---~g~~~~~~~SpDG 254 (430)
T PRK00178 180 TLQRSDYDGAR-AVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRR-EQITNF---EGLNGAPAWSPDG 254 (430)
T ss_pred EEEEECCCCCC-ceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCE-EEccCC---CCCcCCeEECCCC
Confidence 47778877544 45555677889999999999999887644 3799999987653 333333 3345578999999
Q ss_pred CeEEE-EeCCC--cEEEEeCcCceeeeeEecCcccceeEEEEeeCCCcEEEEeecCC--eEEEeeCCCCCcceEEecCCC
Q 017194 116 SFLAC-ADDGG--DVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDS--KLVMWDFSKGRPNKIVNFGLP 190 (375)
Q Consensus 116 ~~l~~-~~~dg--~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~--~i~~wd~~~~~~~~~~~~~~~ 190 (375)
+.|+. ...+| .|++||+.+++.. .+. .+........|+|+++.++++...++ .|+++|+.+++. ..+...
T Consensus 255 ~~la~~~~~~g~~~Iy~~d~~~~~~~-~lt-~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~-~~lt~~-- 329 (430)
T PRK00178 255 SKLAFVLSKDGNPEIYVMDLASRQLS-RVT-NHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRA-ERVTFV-- 329 (430)
T ss_pred CEEEEEEccCCCceEEEEECCCCCeE-Ecc-cCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCE-EEeecC--
Confidence 98874 44444 5888899877653 344 45556677899999985444444443 577778877663 333222
Q ss_pred CCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecC-C--cEEEEeCCCc
Q 017194 191 ENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGD-G--VVDVINIESE 240 (375)
Q Consensus 191 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~d-g--~i~i~d~~~~ 240 (375)
........|+| +++.++..+.+ + .|.++|+.++
T Consensus 330 -----------~~~~~~~~~Sp------dg~~i~~~~~~~~~~~l~~~dl~tg 365 (430)
T PRK00178 330 -----------GNYNARPRLSA------DGKTLVMVHRQDGNFHVAAQDLQRG 365 (430)
T ss_pred -----------CCCccceEECC------CCCEEEEEEccCCceEEEEEECCCC
Confidence 12233467888 78888877643 3 5788888764
No 250
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.61 E-value=1.6e-13 Score=121.16 Aligned_cols=270 Identities=14% Similarity=0.114 Sum_probs=180.4
Q ss_pred CCCceeEEEEecCCCCEEEEeCCCCcEEEEecccCceeeEe------eecCccEEEEEEeCCCCeEEEEcCCCeEEEEEC
Q 017194 14 HKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVT------DVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDV 87 (375)
Q Consensus 14 h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~------~~~~~~v~~l~~~~~~~~l~~~~~d~~i~iwd~ 87 (375)
|-+++++.++-.+ +|+.|.. -.|.+||+.++..+..+ ..|...-.-. -.+.+++++..-+.+..=+.
T Consensus 6 ~~~~l~~~~~~~~---~llag~g-p~i~~yd~~s~~li~~~~~~~~~~~H~~e~~~~---l~~~~~v~~~~~~~v~~~~~ 78 (967)
T KOG0974|consen 6 SLGPLNLPQLVSD---YLLAGSG-PEILVYDLSSGCLIRHLIQSKILEVHRGEGKVK---LLSGKIVTCAKSDEVYVKEA 78 (967)
T ss_pred ccccccchhhccc---eeeecCC-CceEEeeCCchhHhhhhhhhcccccccccccce---eccceEEEEEeecceeecch
Confidence 3355666665443 4554433 35999999988764433 2331000000 11234555554443333222
Q ss_pred CCCCcccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCceeeeeEecCcccc--eeEEE---EeeCCCcEE
Q 017194 88 HMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSI--CSSVQ---FIPWKPWEV 162 (375)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~--v~~~~---~~~~~~~~l 162 (375)
. ...+..+ ...|....+..+...++.++.+..+.+||...+.....+. +... ..++. ++++. .++
T Consensus 79 ~----~~~~~~~---s~wi~g~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~--~~er~~l~~~~~~g~s~~~-~~i 148 (967)
T KOG0974|consen 79 S----NQIIERF---SDWIFGAKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQ--SDERCTLYSSLIIGDSAEE-LYI 148 (967)
T ss_pred h----hhhhhhc---cccccccchhhhcceEEEEEcCceEEEEecccCceehhcC--CCceEEEEeEEEEeccCcE-EEE
Confidence 2 1222222 3344445566677889999999999999998887776665 3222 22222 23333 268
Q ss_pred EEeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCcce
Q 017194 163 ISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELN 242 (375)
Q Consensus 163 ~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~ 242 (375)
++|+.-+.|.+|+....+....+ .+ |.+.+.++.++. +|+++++.+.|.++++|++.+.+.
T Consensus 149 ~~gsv~~~iivW~~~~dn~p~~l-~G------------HeG~iF~i~~s~------dg~~i~s~SdDRsiRlW~i~s~~~ 209 (967)
T KOG0974|consen 149 ASGSVFGEIIVWKPHEDNKPIRL-KG------------HEGSIFSIVTSL------DGRYIASVSDDRSIRLWPIDSREV 209 (967)
T ss_pred EeccccccEEEEeccccCCccee-cc------------cCCceEEEEEcc------CCcEEEEEecCcceeeeecccccc
Confidence 89999999999998733322222 23 789999999988 899999999999999999998532
Q ss_pred eecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEecCCCeEEEEeC
Q 017194 243 ISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDC 322 (375)
Q Consensus 243 ~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd~ 322 (375)
.. ...-+|...|..+.|. |+ .+++++.|.+.++|+.
T Consensus 210 ~~---------------------------------------~~~fgHsaRvw~~~~~---~n--~i~t~gedctcrvW~~ 245 (967)
T KOG0974|consen 210 LG---------------------------------------CTGFGHSARVWACCFL---PN--RIITVGEDCTCRVWGV 245 (967)
T ss_pred cC---------------------------------------cccccccceeEEEEec---cc--eeEEeccceEEEEEec
Confidence 21 2556899999999999 66 9999999999999977
Q ss_pred CCceeeeecchhhhhhhhcccc-cceeeeeecCCCCCcEEEeeCCCeEEEEec
Q 017194 323 SRFQGVQTSINNDLLIKNINLN-KKVNWLCTTPTESENLVVCDTSKVVKVYSI 374 (375)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~l~s~~~dg~v~iw~~ 374 (375)
+.. .+..+.+|. +.|..++..+ +.-.++|++.||.+++|++
T Consensus 246 ~~~----------~l~~y~~h~g~~iw~~~~~~-~~~~~vT~g~Ds~lk~~~l 287 (967)
T KOG0974|consen 246 NGT----------QLEVYDEHSGKGIWKIAVPI-GVIIKVTGGNDSTLKLWDL 287 (967)
T ss_pred ccc----------eehhhhhhhhcceeEEEEcC-CceEEEeeccCcchhhhhh
Confidence 774 344666665 4678888877 7778999999999999986
No 251
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.60 E-value=1.3e-12 Score=112.16 Aligned_cols=213 Identities=14% Similarity=0.078 Sum_probs=129.9
Q ss_pred CCCCCeeeecCCCceeEEEEecCCCCE---EEEeCCCC--cEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEEcC
Q 017194 4 AEAKPRRLRGHKATATCCIASRDRPGF---VASSGEDG--CICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSS 78 (375)
Q Consensus 4 ~~~~~~~l~~h~~~i~~~~~~~~~~~~---l~s~~~d~--~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~ 78 (375)
.+...+.|......+.+-+|+|| |+. +++...+| .|.+.++.+++..+ +..........+|+|||+.|+..+.
T Consensus 173 dG~~~~~lt~~~~~~~sP~wSPD-G~~~~~~y~S~~~g~~~I~~~~l~~g~~~~-lt~~~g~~~~p~wSPDG~~Laf~s~ 250 (428)
T PRK01029 173 DGQNLRPLTQEHSLSITPTWMHI-GSGFPYLYVSYKLGVPKIFLGSLENPAGKK-ILALQGNQLMPTFSPRKKLLAFISD 250 (428)
T ss_pred CCCCceEcccCCCCcccceEccC-CCceEEEEEEccCCCceEEEEECCCCCceE-eecCCCCccceEECCCCCEEEEEEC
Confidence 34445566666667788899999 553 23444443 57777888776433 3333445567899999999887653
Q ss_pred -CC----eEEEEECCCCCcccccccccCCCcceeEEEEcCCCCeEEEEe-CCCcEEEE--eCcC-ceeeeeEecCcccce
Q 017194 79 -GK----EVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACAD-DGGDVKII--DIRQ-HCLYKSLRAGHSSIC 149 (375)
Q Consensus 79 -d~----~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iw--d~~~-~~~~~~~~~~~~~~v 149 (375)
+| .+..|++..+...........+.......+|+|||+.|+..+ .+|...+| ++.. +.....+. .+...+
T Consensus 251 ~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt-~~~~~~ 329 (428)
T PRK01029 251 RYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLT-KKYRNS 329 (428)
T ss_pred CCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEec-cCCCCc
Confidence 22 344467664321111111111123446789999999887765 45654444 5432 23344454 444567
Q ss_pred eEEEEeeCCCcEEEEee-cC--CeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEE
Q 017194 150 SSVQFIPWKPWEVISGG-LD--SKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVA 226 (375)
Q Consensus 150 ~~~~~~~~~~~~l~~~~-~d--~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~ 226 (375)
....|+|+|+. |+..+ .+ ..|.+||+.+++... +... ...+....|+| +++.|+..
T Consensus 330 ~~p~wSPDG~~-Laf~~~~~g~~~I~v~dl~~g~~~~-Lt~~-------------~~~~~~p~wSp------DG~~L~f~ 388 (428)
T PRK01029 330 SCPAWSPDGKK-IAFCSVIKGVRQICVYDLATGRDYQ-LTTS-------------PENKESPSWAI------DSLHLVYS 388 (428)
T ss_pred cceeECCCCCE-EEEEEcCCCCcEEEEEECCCCCeEE-ccCC-------------CCCccceEECC------CCCEEEEE
Confidence 78999999994 55443 33 479999998876533 2211 23456788988 78887754
Q ss_pred ec---CCcEEEEeCCCc
Q 017194 227 KG---DGVVDVINIESE 240 (375)
Q Consensus 227 ~~---dg~i~i~d~~~~ 240 (375)
.. ...|.++|+.++
T Consensus 389 ~~~~g~~~L~~vdl~~g 405 (428)
T PRK01029 389 AGNSNESELYLISLITK 405 (428)
T ss_pred ECCCCCceEEEEECCCC
Confidence 43 346888888764
No 252
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.59 E-value=3.2e-11 Score=95.00 Aligned_cols=277 Identities=14% Similarity=0.187 Sum_probs=178.9
Q ss_pred CCcEEEEecccCce---eeEeeecCccEEEEEEeCCCCeEEEEcCC---CeEEEEECCCC-CcccccccccCCCcceeEE
Q 017194 37 DGCICWFDLRSKDV---QLVTDVGNGPVTSLCFKSGNEDIIYVSSG---KEVKSFDVHMP-ASWRPLESYNYNKEEINQI 109 (375)
Q Consensus 37 d~~i~iw~~~~~~~---~~~~~~~~~~v~~l~~~~~~~~l~~~~~d---~~i~iwd~~~~-~~~~~~~~~~~~~~~v~~~ 109 (375)
+.-|.+|++.+..- ...+-.+...++-|+|+|++++|.++..+ |.|..|.++.. ..+..+........+-..+
T Consensus 15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yv 94 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYV 94 (346)
T ss_pred CCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEE
Confidence 35699999874322 11222356778899999999999887654 67777777642 2233333332223445889
Q ss_pred EEcCCCCeEEEEe-CCCcEEEEeCcC-cee---eeeEecCcccc----------eeEEEEeeCCCcEEEEee-cCCeEEE
Q 017194 110 VCNPKSSFLACAD-DGGDVKIIDIRQ-HCL---YKSLRAGHSSI----------CSSVQFIPWKPWEVISGG-LDSKLVM 173 (375)
Q Consensus 110 ~~~~~~~~l~~~~-~dg~i~iwd~~~-~~~---~~~~~~~~~~~----------v~~~~~~~~~~~~l~~~~-~d~~i~~ 173 (375)
++++++++++++. ..|.|.++-++. |.+ +..+. |.+. +-...+.|++++ +++.. .--+|.+
T Consensus 95 svd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~--h~g~~p~~rQ~~~h~H~a~~tP~~~~-l~v~DLG~Dri~~ 171 (346)
T COG2706 95 SVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVK--HTGSGPHERQESPHVHSANFTPDGRY-LVVPDLGTDRIFL 171 (346)
T ss_pred EECCCCCEEEEEEccCceEEEEEcccCCccccceeeee--cCCCCCCccccCCccceeeeCCCCCE-EEEeecCCceEEE
Confidence 9999999998886 568899999865 332 23333 5544 778899999984 55543 4457999
Q ss_pred eeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEe-cCCcEEEEeCCCcceeecccccCCC
Q 017194 174 WDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAK-GDGVVDVINIESELNISRSKSTTKP 252 (375)
Q Consensus 174 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~ 252 (375)
|++..++....-.... ......+.|.|+| ++++..+.+ -+++|.+|.........
T Consensus 172 y~~~dg~L~~~~~~~v----------~~G~GPRHi~FHp------n~k~aY~v~EL~stV~v~~y~~~~g~~-------- 227 (346)
T COG2706 172 YDLDDGKLTPADPAEV----------KPGAGPRHIVFHP------NGKYAYLVNELNSTVDVLEYNPAVGKF-------- 227 (346)
T ss_pred EEcccCcccccccccc----------CCCCCcceEEEcC------CCcEEEEEeccCCEEEEEEEcCCCceE--------
Confidence 9999776543322111 1235678999999 899988776 48899999988631111
Q ss_pred CCCceeecccccceeeeeeeecCCcceeEeeeeecC---CCccEEEEEEeecCCCCcEEEEecC-CCeEEEEeCCCceee
Q 017194 253 LKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGG---HTAAASCVAFSMFGERGKYLISGGN-DKLVKVWDCSRFQGV 328 (375)
Q Consensus 253 ~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~v~~~~~s~~~~~~~~l~s~~~-dg~i~iwd~~~~~~~ 328 (375)
..++.+..+.. -......+.++ +||++|.++.. ...|.+|.+......
T Consensus 228 -------------------------~~lQ~i~tlP~dF~g~~~~aaIhis---~dGrFLYasNRg~dsI~~f~V~~~~g~ 279 (346)
T COG2706 228 -------------------------EELQTIDTLPEDFTGTNWAAAIHIS---PDGRFLYASNRGHDSIAVFSVDPDGGK 279 (346)
T ss_pred -------------------------EEeeeeccCccccCCCCceeEEEEC---CCCCEEEEecCCCCeEEEEEEcCCCCE
Confidence 01111112211 13456778888 99999998864 347888877654221
Q ss_pred eecchhhhhhhhcccccceeeeeecCCCCCcEEEeeCC-CeEEEEec
Q 017194 329 QTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTS-KVVKVYSI 374 (375)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d-g~v~iw~~ 374 (375)
. ..+.....+......+.+.+ ++++|+++..+ ..|.++.+
T Consensus 280 L-----~~~~~~~teg~~PR~F~i~~-~g~~Liaa~q~sd~i~vf~~ 320 (346)
T COG2706 280 L-----ELVGITPTEGQFPRDFNINP-SGRFLIAANQKSDNITVFER 320 (346)
T ss_pred E-----EEEEEeccCCcCCccceeCC-CCCEEEEEccCCCcEEEEEE
Confidence 1 23333334445577888988 88898888754 46777764
No 253
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.59 E-value=1.1e-12 Score=113.62 Aligned_cols=175 Identities=14% Similarity=0.186 Sum_probs=113.8
Q ss_pred cEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEEcCC---CeEEEEECCCCCcccccccccCCCcceeEEEEcCCC
Q 017194 39 CICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSG---KEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKS 115 (375)
Q Consensus 39 ~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d---~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 115 (375)
.|.++|..... .+.+..+...+.+..|+|||+.|+..+.+ ..|++||+.+++. ..+.... +......|+||+
T Consensus 199 ~l~i~d~dG~~-~~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~-~~lt~~~---g~~~~~~wSPDG 273 (448)
T PRK04792 199 QLMIADYDGYN-EQMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVR-EKVTSFP---GINGAPRFSPDG 273 (448)
T ss_pred EEEEEeCCCCC-ceEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCe-EEecCCC---CCcCCeeECCCC
Confidence 57777865544 34555567788999999999999887643 3689999987643 3333332 334578999999
Q ss_pred CeEEE-EeCCCc--EEEEeCcCceeeeeEecCcccceeEEEEeeCCCcEEEEeecCC--eEEEeeCCCCCcceEEecCCC
Q 017194 116 SFLAC-ADDGGD--VKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDS--KLVMWDFSKGRPNKIVNFGLP 190 (375)
Q Consensus 116 ~~l~~-~~~dg~--i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~--~i~~wd~~~~~~~~~~~~~~~ 190 (375)
+.|+. .+.+|. |+++|+.+++.. .+. .+.......+|+|+++.++++...++ .|+++|+.+++.. .+...
T Consensus 274 ~~La~~~~~~g~~~Iy~~dl~tg~~~-~lt-~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~-~Lt~~-- 348 (448)
T PRK04792 274 KKLALVLSKDGQPEIYVVDIATKALT-RIT-RHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVS-RLTFE-- 348 (448)
T ss_pred CEEEEEEeCCCCeEEEEEECCCCCeE-ECc-cCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEE-EEecC--
Confidence 98775 455664 888888777653 344 45556678899999985445544444 5667777766543 33211
Q ss_pred CCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEec-CC--cEEEEeCCCc
Q 017194 191 ENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKG-DG--VVDVINIESE 240 (375)
Q Consensus 191 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~-dg--~i~i~d~~~~ 240 (375)
.......+|+| +|+.++..+. ++ .|.++|+.++
T Consensus 349 -----------g~~~~~~~~Sp------DG~~l~~~~~~~g~~~I~~~dl~~g 384 (448)
T PRK04792 349 -----------GEQNLGGSITP------DGRSMIMVNRTNGKFNIARQDLETG 384 (448)
T ss_pred -----------CCCCcCeeECC------CCCEEEEEEecCCceEEEEEECCCC
Confidence 12233467888 7888877654 33 4555676654
No 254
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.59 E-value=1.2e-12 Score=108.78 Aligned_cols=192 Identities=16% Similarity=0.193 Sum_probs=151.0
Q ss_pred CCCCeEEEEcCCCeEEEEECCCCCcccccccccCCCcceeEEEEc--------------------CCCCeEEEEeCCCcE
Q 017194 68 SGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCN--------------------PKSSFLACADDGGDV 127 (375)
Q Consensus 68 ~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~--------------------~~~~~l~~~~~dg~i 127 (375)
|...++|....||.+++|+..+++....+.....-.+..++..|. .+...++-|...|.|
T Consensus 3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v 82 (541)
T KOG4547|consen 3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSV 82 (541)
T ss_pred chhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccE
Confidence 456789999999999999998776544443322223444444442 123357778889999
Q ss_pred EEEeCcCceeeeeEe-cCcccceeEEEEeeCCCcEEEEeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCcee
Q 017194 128 KIIDIRQHCLYKSLR-AGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVH 206 (375)
Q Consensus 128 ~iwd~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 206 (375)
.+|++..++....+. ..|.+.|+++.++.+-. .|.+++.|+.+..|+....+.+..+... +..+.
T Consensus 83 ~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~-ciyS~~ad~~v~~~~~~~~~~~~~~~~~-------------~~~~~ 148 (541)
T KOG4547|consen 83 LLYSVAGGEITAKLSTDKHYGNVNEILDAQRLG-CIYSVGADLKVVYILEKEKVIIRIWKEQ-------------KPLVS 148 (541)
T ss_pred EEEEecCCeEEEEEecCCCCCcceeeecccccC-ceEecCCceeEEEEecccceeeeeeccC-------------CCccc
Confidence 999999999888876 47899999999988877 7999999999999999998888888755 56788
Q ss_pred EEeecCCccccCCCCEEEEEecCCcEEEEeCCCcceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeee
Q 017194 207 AIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSV 286 (375)
Q Consensus 207 ~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~ 286 (375)
+++++| |++.+++++ ++|++||+++. +.+..+
T Consensus 149 sl~is~------D~~~l~~as--~~ik~~~~~~k----------------------------------------evv~~f 180 (541)
T KOG4547|consen 149 SLCISP------DGKILLTAS--RQIKVLDIETK----------------------------------------EVVITF 180 (541)
T ss_pred eEEEcC------CCCEEEecc--ceEEEEEccCc----------------------------------------eEEEEe
Confidence 999999 899999887 47999999985 667799
Q ss_pred cCCCccEEEEEEeecCCC-----CcEEEEe-cCCCeEEEEeCCC
Q 017194 287 GGHTAAASCVAFSMFGER-----GKYLISG-GNDKLVKVWDCSR 324 (375)
Q Consensus 287 ~~~~~~v~~~~~s~~~~~-----~~~l~s~-~~dg~i~iwd~~~ 324 (375)
.+|.++|+++.|. .+ |.+++++ ..+..+.+|-+..
T Consensus 181 tgh~s~v~t~~f~---~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 181 TGHGSPVRTLSFT---TLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred cCCCcceEEEEEE---EeccccccceeeeccccccceeEEEEEc
Confidence 9999999999997 55 6666654 4566788887765
No 255
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.58 E-value=4e-13 Score=114.32 Aligned_cols=294 Identities=13% Similarity=0.156 Sum_probs=194.2
Q ss_pred CCceeEEEEecCCCCEEEEeCCCCcEEEEecccCce---------------eeEeeecCccEEEEEEeCCCCeEEEEcCC
Q 017194 15 KATATCCIASRDRPGFVASSGEDGCICWFDLRSKDV---------------QLVTDVGNGPVTSLCFKSGNEDIIYVSSG 79 (375)
Q Consensus 15 ~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~---------------~~~~~~~~~~v~~l~~~~~~~~l~~~~~d 79 (375)
.....|+.|+.. ..++|+||.||.+++..+.+... -+++.+|+..|..+.|+.+.+.|-+...+
T Consensus 14 nvkL~c~~WNke-~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~ 92 (1189)
T KOG2041|consen 14 NVKLHCAEWNKE-SGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTS 92 (1189)
T ss_pred CceEEEEEEccc-CCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCC
Confidence 356789999998 78999999999999998764321 45678999999999999998889888899
Q ss_pred CeEEEEECCCCCcccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCceee-eeEecCcccceeEEEEeeCC
Q 017194 80 KEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLY-KSLRAGHSSICSSVQFIPWK 158 (375)
Q Consensus 80 ~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~-~~~~~~~~~~v~~~~~~~~~ 158 (375)
|-|.+|-+-.+.-.+.... ...++.|.+++|+.+|..|+....||.|.+=.++..+.- +.++ + .....+.|++|.
T Consensus 93 GlIiVWmlykgsW~EEMiN-nRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLk-g--~~l~hv~ws~D~ 168 (1189)
T KOG2041|consen 93 GLIIVWMLYKGSWCEEMIN-NRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELK-G--QLLAHVLWSEDL 168 (1189)
T ss_pred ceEEEEeeecccHHHHHhh-CcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhcc-h--heccceeecccH
Confidence 9999999886643333222 223678999999999999999999999988777654332 2233 1 123478899998
Q ss_pred CcEEEEeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCC--ccccCCCCEEEEEecCCcEEEEe
Q 017194 159 PWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDA--DMLDKTNKICVVAKGDGVVDVIN 236 (375)
Q Consensus 159 ~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~~~~~~l~~~~~dg~i~i~d 236 (375)
+ .++.+-.+|.+.+||.... ....+...- .++........+..+..+.|... ....|+...|+++...|.+.+..
T Consensus 169 ~-~~Lf~~ange~hlydnqgn-F~~Kl~~~c-~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR 245 (1189)
T KOG2041|consen 169 E-QALFKKANGETHLYDNQGN-FERKLEKDC-EVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMR 245 (1189)
T ss_pred H-HHHhhhcCCcEEEeccccc-HHHhhhhce-EEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhh
Confidence 8 6777788899999997532 211111100 00000000001233555555432 12245788899999999888866
Q ss_pred CCCcceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEecCCC-
Q 017194 237 IESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDK- 315 (375)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~dg- 315 (375)
-.+...+. +-...-.+....|+ ++|..||.++.|.
T Consensus 246 ~eND~~Pv-----------------------------------------v~dtgm~~vgakWn---h~G~vLAvcG~~~d 281 (1189)
T KOG2041|consen 246 SENDPEPV-----------------------------------------VVDTGMKIVGAKWN---HNGAVLAVCGNDSD 281 (1189)
T ss_pred hcCCCCCe-----------------------------------------EEecccEeecceec---CCCcEEEEccCccc
Confidence 55432111 11112467788898 8999999888653
Q ss_pred --------eEEEEeCCCceeeeecchhhhhhhhcccccceeeeeecCCCCCcEEEeeCCCeEEEE
Q 017194 316 --------LVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVY 372 (375)
Q Consensus 316 --------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~iw 372 (375)
.|.+|..-. +.+..+.-....|++++|-. .|-.++.+ .|+.|++=
T Consensus 282 a~~~~d~n~v~Fysp~G----------~i~gtlkvpg~~It~lsWEg-~gLriA~A-vdsfiyfa 334 (1189)
T KOG2041|consen 282 ADEPTDSNKVHFYSPYG----------HIVGTLKVPGSCITGLSWEG-TGLRIAIA-VDSFIYFA 334 (1189)
T ss_pred ccCccccceEEEeccch----------hheEEEecCCceeeeeEEcC-CceEEEEE-ecceEEEE
Confidence 344444332 56666666777888888855 44333333 55666553
No 256
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.58 E-value=9.4e-13 Score=113.97 Aligned_cols=202 Identities=12% Similarity=0.107 Sum_probs=124.7
Q ss_pred CeeeecCCCceeEEEEecCCCCEEEEeCC-C--CcEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEE-cCCC--e
Q 017194 8 PRRLRGHKATATCCIASRDRPGFVASSGE-D--GCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYV-SSGK--E 81 (375)
Q Consensus 8 ~~~l~~h~~~i~~~~~~~~~~~~l~s~~~-d--~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~~d~--~ 81 (375)
.+.+..+...+.+..|+|| |+.|+..+. + ..|.+||+.+++... +...........|+|||+.|+.. +.++ .
T Consensus 210 ~~~l~~~~~~~~~p~wSPD-G~~La~~s~~~g~~~L~~~dl~tg~~~~-lt~~~g~~~~~~wSPDG~~La~~~~~~g~~~ 287 (448)
T PRK04792 210 EQMLLRSPEPLMSPAWSPD-GRKLAYVSFENRKAEIFVQDIYTQVREK-VTSFPGINGAPRFSPDGKKLALVLSKDGQPE 287 (448)
T ss_pred ceEeecCCCcccCceECCC-CCEEEEEEecCCCcEEEEEECCCCCeEE-ecCCCCCcCCeeECCCCCEEEEEEeCCCCeE
Confidence 4455556678889999999 777776533 3 358888988876532 22223334578999999988764 4455 4
Q ss_pred EEEEECCCCCcccccccccCCCcceeEEEEcCCCCeEEEEeC-CC--cEEEEeCcCceeeeeEecCcccceeEEEEeeCC
Q 017194 82 VKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADD-GG--DVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWK 158 (375)
Q Consensus 82 i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg--~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~ 158 (375)
|+++|+.+++. ..+. .+........|+||++.|+..+. ++ .|+++|+.+++... +. .........+|+|+|
T Consensus 288 Iy~~dl~tg~~-~~lt---~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~-Lt-~~g~~~~~~~~SpDG 361 (448)
T PRK04792 288 IYVVDIATKAL-TRIT---RHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSR-LT-FEGEQNLGGSITPDG 361 (448)
T ss_pred EEEEECCCCCe-EECc---cCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEE-Ee-cCCCCCcCeeECCCC
Confidence 88888876543 2222 23445677899999998876653 33 47777887766433 22 122233457899999
Q ss_pred CcEEEEeecCC--eEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecC-C--cEE
Q 017194 159 PWEVISGGLDS--KLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGD-G--VVD 233 (375)
Q Consensus 159 ~~~l~~~~~d~--~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~d-g--~i~ 233 (375)
++++++...++ .|.++|+.+++. ..+... .......|+| +++.++..+.+ | .+.
T Consensus 362 ~~l~~~~~~~g~~~I~~~dl~~g~~-~~lt~~--------------~~d~~ps~sp------dG~~I~~~~~~~g~~~l~ 420 (448)
T PRK04792 362 RSMIMVNRTNGKFNIARQDLETGAM-QVLTST--------------RLDESPSVAP------NGTMVIYSTTYQGKQVLA 420 (448)
T ss_pred CEEEEEEecCCceEEEEEECCCCCe-EEccCC--------------CCCCCceECC------CCCEEEEEEecCCceEEE
Confidence 95444444444 456678776653 222211 1112336777 78887766543 3 366
Q ss_pred EEeCC
Q 017194 234 VINIE 238 (375)
Q Consensus 234 i~d~~ 238 (375)
+++..
T Consensus 421 ~~~~~ 425 (448)
T PRK04792 421 AVSID 425 (448)
T ss_pred EEECC
Confidence 66664
No 257
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.58 E-value=4.9e-11 Score=93.95 Aligned_cols=263 Identities=10% Similarity=0.134 Sum_probs=173.6
Q ss_pred cCCCceeEEEEecCCCCEEEEeCC---CCcEEEEeccc--Cce--eeEeeecCccEEEEEEeCCCCeEEEEcCC-CeEEE
Q 017194 13 GHKATATCCIASRDRPGFVASSGE---DGCICWFDLRS--KDV--QLVTDVGNGPVTSLCFKSGNEDIIYVSSG-KEVKS 84 (375)
Q Consensus 13 ~h~~~i~~~~~~~~~~~~l~s~~~---d~~i~iw~~~~--~~~--~~~~~~~~~~v~~l~~~~~~~~l~~~~~d-~~i~i 84 (375)
.+.+..+=|+|+|+ ++.|.++.. +|.|.-|.++. |+. +........+-..+++++++++++++... |.|.+
T Consensus 37 ~~~~nptyl~~~~~-~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~v 115 (346)
T COG2706 37 AELGNPTYLAVNPD-QRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDEDGRFVFVANYHSGSVSV 115 (346)
T ss_pred cccCCCceEEECCC-CCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECCCCCEEEEEEccCceEEE
Confidence 45666778999998 778887754 47788888775 443 11112223444889999999999998875 79999
Q ss_pred EECCCCCcccccccccCCCcc----------eeEEEEcCCCCeEEEEeC-CCcEEEEeCcCceeeeeEe--cCcccceeE
Q 017194 85 FDVHMPASWRPLESYNYNKEE----------INQIVCNPKSSFLACADD-GGDVKIIDIRQHCLYKSLR--AGHSSICSS 151 (375)
Q Consensus 85 wd~~~~~~~~~~~~~~~~~~~----------v~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~--~~~~~~v~~ 151 (375)
+-++....+........|.+. +....+.|++++|++.+- .-.|.+|++..++....-. .......+.
T Consensus 116 ~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRH 195 (346)
T COG2706 116 YPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRH 195 (346)
T ss_pred EEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCccccccccccCCCCCcce
Confidence 999764334433333333444 788999999999988762 3369999998775432111 023456799
Q ss_pred EEEeeCCCcEEEEeecCCeEEEeeCCCC-CcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEec-C
Q 017194 152 VQFIPWKPWEVISGGLDSKLVMWDFSKG-RPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKG-D 229 (375)
Q Consensus 152 ~~~~~~~~~~l~~~~~d~~i~~wd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~-d 229 (375)
|.|+|+++...+..--+++|.+|..+.. ..+..++... ..........+...|.++| +|++|.++.. .
T Consensus 196 i~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~----tlP~dF~g~~~~aaIhis~------dGrFLYasNRg~ 265 (346)
T COG2706 196 IVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTID----TLPEDFTGTNWAAAIHISP------DGRFLYASNRGH 265 (346)
T ss_pred EEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeec----cCccccCCCCceeEEEECC------CCCEEEEecCCC
Confidence 9999999965666778999999999873 2233322110 0001111345677888988 8999998863 3
Q ss_pred CcEEEEeCCCcceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEE
Q 017194 230 GVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLI 309 (375)
Q Consensus 230 g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~ 309 (375)
..|.+|.+.. ++. .+..+.....+....+...|+ ++|++|+
T Consensus 266 dsI~~f~V~~----------------------~~g--------------~L~~~~~~~teg~~PR~F~i~---~~g~~Li 306 (346)
T COG2706 266 DSIAVFSVDP----------------------DGG--------------KLELVGITPTEGQFPRDFNIN---PSGRFLI 306 (346)
T ss_pred CeEEEEEEcC----------------------CCC--------------EEEEEEEeccCCcCCccceeC---CCCCEEE
Confidence 4666666553 222 233444444555556788888 8999999
Q ss_pred EecCC-CeEEEEeCCCc
Q 017194 310 SGGND-KLVKVWDCSRF 325 (375)
Q Consensus 310 s~~~d-g~i~iwd~~~~ 325 (375)
++.+| ..|.+|..+..
T Consensus 307 aa~q~sd~i~vf~~d~~ 323 (346)
T COG2706 307 AANQKSDNITVFERDKE 323 (346)
T ss_pred EEccCCCcEEEEEEcCC
Confidence 88764 46888877654
No 258
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.56 E-value=2.7e-13 Score=105.30 Aligned_cols=265 Identities=14% Similarity=0.149 Sum_probs=169.6
Q ss_pred CccEEEEEEeCCCCeEEEEcCCCeEEEEECCCCCc--ccccccccCC------------CcceeEEEEcCCCC--eEEEE
Q 017194 58 NGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPAS--WRPLESYNYN------------KEEINQIVCNPKSS--FLACA 121 (375)
Q Consensus 58 ~~~v~~l~~~~~~~~l~~~~~d~~i~iwd~~~~~~--~~~~~~~~~~------------~~~v~~~~~~~~~~--~l~~~ 121 (375)
.+-|.++.|...|.+|++|..+|.|.++.-..... ......++.| ...|..+.|.++++ .++..
T Consensus 25 adiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLls 104 (433)
T KOG1354|consen 25 ADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLS 104 (433)
T ss_pred hcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEe
Confidence 46788999999999999999999999997543221 1122222222 34688899998654 46667
Q ss_pred eCCCcEEEEeCcCcee-----------------------------------eeeEecCcccceeEEEEeeCCCcEEEEee
Q 017194 122 DDGGDVKIIDIRQHCL-----------------------------------YKSLRAGHSSICSSVQFIPWKPWEVISGG 166 (375)
Q Consensus 122 ~~dg~i~iwd~~~~~~-----------------------------------~~~~~~~~~~~v~~~~~~~~~~~~l~~~~ 166 (375)
..|.+|++|.+..... .+.+..+|..-|+++.++.|.. .++++
T Consensus 105 tNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~E-t~lSA- 182 (433)
T KOG1354|consen 105 TNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKE-TFLSA- 182 (433)
T ss_pred cCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccc-eEeec-
Confidence 7899999998763211 1122236778899999999987 45554
Q ss_pred cCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCcceee--
Q 017194 167 LDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNIS-- 244 (375)
Q Consensus 167 ~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~-- 244 (375)
.|=.|.+|++.-......+.--.|..... -...|++..|+|. ..++++-.+..|+|++-|++....-.
T Consensus 183 DdLRINLWnlei~d~sFnIVDIKP~nmEe-----LteVITsaEFhp~-----~cn~f~YSSSKGtIrLcDmR~~aLCd~h 252 (433)
T KOG1354|consen 183 DDLRINLWNLEIIDQSFNIVDIKPANMEE-----LTEVITSAEFHPH-----HCNVFVYSSSKGTIRLCDMRQSALCDAH 252 (433)
T ss_pred cceeeeeccccccCCceeEEEccccCHHH-----HHHHHhhhccCHh-----HccEEEEecCCCcEEEeechhhhhhcch
Confidence 57789999987543333222111110000 1235788889986 67888899999999999999532111
Q ss_pred -cccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEecCCCeEEEEeCC
Q 017194 245 -RSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCS 323 (375)
Q Consensus 245 -~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd~~ 323 (375)
++...+..+. -..-+..--..|..+.|+ ++|+|+++-+. -+|++||+.
T Consensus 253 sKlfEepedp~---------------------------~rsffseiIsSISDvKFs---~sGryilsRDy-ltvk~wD~n 301 (433)
T KOG1354|consen 253 SKLFEEPEDPS---------------------------SRSFFSEIISSISDVKFS---HSGRYILSRDY-LTVKLWDLN 301 (433)
T ss_pred hhhhccccCCc---------------------------chhhHHHHhhhhhceEEc---cCCcEEEEecc-ceeEEEecc
Confidence 1111100000 000111224568899999 99999998876 689999995
Q ss_pred Cceeeeecchhhhhhhhccc------------ccc---eeeeeecCCCCCcEEEeeCCCeEEEEec
Q 017194 324 RFQGVQTSINNDLLIKNINL------------NKK---VNWLCTTPTESENLVVCDTSKVVKVYSI 374 (375)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~------------~~~---v~~~~~~~~~~~~l~s~~~dg~v~iw~~ 374 (375)
-.. +.+.+..-| ... -..++|+. ++.+++||+....++++++
T Consensus 302 me~--------~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg-~~~~v~TGsy~n~frvf~~ 358 (433)
T KOG1354|consen 302 MEA--------KPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSG-NDSYVMTGSYNNVFRVFNL 358 (433)
T ss_pred ccC--------CcceEEeehHhHHHHHHHHhhccchhheeEEEEcC-CcceEecccccceEEEecC
Confidence 432 112222211 112 24567877 7789999999999999874
No 259
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.56 E-value=3e-13 Score=119.43 Aligned_cols=201 Identities=16% Similarity=0.114 Sum_probs=155.7
Q ss_pred ccEEEEEEeCCCCeEEEEcCCCeEEEEECCCCCcccccccccC-CCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCcee
Q 017194 59 GPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNY-NKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCL 137 (375)
Q Consensus 59 ~~v~~l~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 137 (375)
+.|....+..+...++.++.++.+.+||...+.....+..-.. .-....-+.++++.-++++|+.-+.|.+|+....+.
T Consensus 88 ~wi~g~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~ 167 (967)
T KOG0974|consen 88 DWIFGAKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDNK 167 (967)
T ss_pred ccccccchhhhcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccCC
Confidence 4455555566777899999999999999986544333332110 001222344567777899999999999999884444
Q ss_pred eeeEecCcccceeEEEEeeCCCcEEEEeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCcccc
Q 017194 138 YKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLD 217 (375)
Q Consensus 138 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 217 (375)
...+. +|.+.+.++.|+.+|. ++++.++|.++++|++.+.+.....-++ |+..+..+.+.|
T Consensus 168 p~~l~-GHeG~iF~i~~s~dg~-~i~s~SdDRsiRlW~i~s~~~~~~~~fg------------HsaRvw~~~~~~----- 228 (967)
T KOG0974|consen 168 PIRLK-GHEGSIFSIVTSLDGR-YIASVSDDRSIRLWPIDSREVLGCTGFG------------HSARVWACCFLP----- 228 (967)
T ss_pred cceec-ccCCceEEEEEccCCc-EEEEEecCcceeeeecccccccCccccc------------ccceeEEEEecc-----
Confidence 34577 9999999999999999 7999999999999999998877755556 789999999987
Q ss_pred CCCCEEEEEecCCcEEEEeCCCcceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCC-ccEEEE
Q 017194 218 KTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHT-AAASCV 296 (375)
Q Consensus 218 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~ 296 (375)
+ .+++++.|.+.++|+... ..+..+.+|. ..+..+
T Consensus 229 -n--~i~t~gedctcrvW~~~~-----------------------------------------~~l~~y~~h~g~~iw~~ 264 (967)
T KOG0974|consen 229 -N--RIITVGEDCTCRVWGVNG-----------------------------------------TQLEVYDEHSGKGIWKI 264 (967)
T ss_pred -c--eeEEeccceEEEEEeccc-----------------------------------------ceehhhhhhhhcceeEE
Confidence 4 999999999999997663 2222556663 468999
Q ss_pred EEeecCCCCcEEEEecCCCeEEEEeCCCc
Q 017194 297 AFSMFGERGKYLISGGNDKLVKVWDCSRF 325 (375)
Q Consensus 297 ~~s~~~~~~~~l~s~~~dg~i~iwd~~~~ 325 (375)
+.. ++...++|++.|+.+++|++...
T Consensus 265 ~~~---~~~~~~vT~g~Ds~lk~~~l~~r 290 (967)
T KOG0974|consen 265 AVP---IGVIIKVTGGNDSTLKLWDLNGR 290 (967)
T ss_pred EEc---CCceEEEeeccCcchhhhhhhcc
Confidence 998 88889999999999999998764
No 260
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.56 E-value=7.7e-12 Score=102.37 Aligned_cols=317 Identities=11% Similarity=0.028 Sum_probs=203.7
Q ss_pred CCCceeEEEEecCCCCEEEEeCCCCcEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEEcCC--------------
Q 017194 14 HKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSG-------------- 79 (375)
Q Consensus 14 h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d-------------- 79 (375)
-.-++..+++||. |.+|++....| |.+|....+..+..+. ...|..+.|+|.+++|.+-+..
T Consensus 31 ~~~p~~~~~~SP~-G~~l~~~~~~~-V~~~~g~~~~~l~~~~--~~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~ 106 (561)
T COG5354 31 ENWPVAYVSESPL-GTYLFSEHAAG-VECWGGPSKAKLVRFR--HPDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTS 106 (561)
T ss_pred cCcchhheeecCc-chheehhhccc-eEEccccchhheeeee--cCCceecccCcccceeeeeccCCccChhhccCCccc
Confidence 4567888999999 89999888765 9999988777555554 3578999999999999986643
Q ss_pred -CeEEEEECCCCCcccccccccCCCccee-EEEEcCCCCeEEEEeCCCcEEEEeCcCcee-eeeEecCcccceeEEEEee
Q 017194 80 -KEVKSFDVHMPASWRPLESYNYNKEEIN-QIVCNPKSSFLACADDGGDVKIIDIRQHCL-YKSLRAGHSSICSSVQFIP 156 (375)
Q Consensus 80 -~~i~iwd~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~~v~~~~~~~ 156 (375)
+.+.+||+.++............ .-.. -+.|+.+.+++|-- ....++|+++ +... ...+.......+....|+|
T Consensus 107 ~n~~~vwd~~sg~iv~sf~~~~q~-~~~Wp~~k~s~~D~y~ARv-v~~sl~i~e~-t~n~~~~p~~~lr~~gi~dFsisP 183 (561)
T COG5354 107 KNNVFVWDIASGMIVFSFNGISQP-YLGWPVLKFSIDDKYVARV-VGSSLYIHEI-TDNIEEHPFKNLRPVGILDFSISP 183 (561)
T ss_pred cCceeEEeccCceeEeeccccCCc-ccccceeeeeecchhhhhh-ccCeEEEEec-CCccccCchhhccccceeeEEecC
Confidence 35999999987554443333211 1133 67888888887655 3357999997 3322 1122201124678888999
Q ss_pred CCCc-EEEE-----eecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEe---
Q 017194 157 WKPW-EVIS-----GGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAK--- 227 (375)
Q Consensus 157 ~~~~-~l~~-----~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~--- 227 (375)
.++. .|+. .+.++++++|.+..+..+....+- ...-..+.|.+ .|++|++--
T Consensus 184 ~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lf-------------k~~~~qLkW~~------~g~~ll~l~~t~ 244 (561)
T COG5354 184 EGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLF-------------KVSGVQLKWQV------LGKYLLVLVMTH 244 (561)
T ss_pred CCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeE-------------eecccEEEEec------CCceEEEEEEEe
Confidence 7541 2333 456789999999877665544322 12223566666 465554321
Q ss_pred --------cCCcEEEEeCCCcceeecccccCCCCCCceeecccccceeeeeeeecCC----cceeEeeeeecCCCccEEE
Q 017194 228 --------GDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSG----GKRLHLDYSVGGHTAAASC 295 (375)
Q Consensus 228 --------~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~v~~ 295 (375)
.+..++++++.....+... ....++....|.|.++.++++..+.... .....+. +......-+.
T Consensus 245 ~ksnKsyfgesnLyl~~~~e~~i~V~~--~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~Nl~--~~~Pe~~rNT 320 (561)
T COG5354 245 TKSNKSYFGESNLYLLRITERSIPVEK--DLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGNLR--FYFPEQKRNT 320 (561)
T ss_pred eecccceeccceEEEEeecccccceec--cccccceeeeecccCCceeEEecccccceeecccccceE--EecCCccccc
Confidence 2356888888743333322 4467888999999999988755332211 1111122 2223445566
Q ss_pred EEEeecCCCCcEEEEecCC---CeEEEEeCCCceeeeecchhhhhhhhcccccceeeeeecCCCCCcEEEee------CC
Q 017194 296 VAFSMFGERGKYLISGGND---KLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCD------TS 366 (375)
Q Consensus 296 ~~~s~~~~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~------~d 366 (375)
+.|+ |.+++++.++-| |.|-+||..... .++..+.+ ....-+.|+| |++++.+.. .|
T Consensus 321 ~~fs---p~~r~il~agF~nl~gni~i~~~~~rf--------~~~~~~~~--~n~s~~~wsp-d~qF~~~~~ts~k~~~D 386 (561)
T COG5354 321 IFFS---PHERYILFAGFDNLQGNIEIFDPAGRF--------KVAGAFNG--LNTSYCDWSP-DGQFYDTDTTSEKLRVD 386 (561)
T ss_pred cccc---CcccEEEEecCCccccceEEeccCCce--------EEEEEeec--CCceEeeccC-CceEEEecCCCcccccC
Confidence 7889 899999988765 679999998863 22112222 2233457888 999888753 57
Q ss_pred CeEEEEec
Q 017194 367 KVVKVYSI 374 (375)
Q Consensus 367 g~v~iw~~ 374 (375)
..|.||++
T Consensus 387 n~i~l~~v 394 (561)
T COG5354 387 NSIKLWDV 394 (561)
T ss_pred cceEEEEe
Confidence 88999997
No 261
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.55 E-value=5.4e-11 Score=97.36 Aligned_cols=271 Identities=12% Similarity=0.034 Sum_probs=160.5
Q ss_pred CcEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEEcC----------CCeEEEEECCCCCcccccccccC----CC
Q 017194 38 GCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSS----------GKEVKSFDVHMPASWRPLESYNY----NK 103 (375)
Q Consensus 38 ~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~----------d~~i~iwd~~~~~~~~~~~~~~~----~~ 103 (375)
++|.+.|..+++.+..+..-..+- .+ ++||++.|+.+.. +..|.+||..+.+....+..-.. ..
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~~P~-~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~ 104 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGFLPN-PV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVG 104 (352)
T ss_pred ceEEEEECCCCEEEEEEEccCCCc-ee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhcc
Confidence 899999999999988887644443 34 9999998887766 67999999998766555543211 01
Q ss_pred cceeEEEEcCCCCeEEEEe-C-CCcEEEEeCcCceeeeeEecCcccceeEEEEeeCCCcEEEEeecCCeEEEeeCCCCCc
Q 017194 104 EEINQIVCNPKSSFLACAD-D-GGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRP 181 (375)
Q Consensus 104 ~~v~~~~~~~~~~~l~~~~-~-dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~ 181 (375)
.....++++|||++|++.. . +..|.+.|+.+++.+..+. - .....-...++.. +..-+.||......+.....
T Consensus 105 ~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~-v-p~~~~vy~t~e~~---~~~~~~Dg~~~~v~~d~~g~ 179 (352)
T TIGR02658 105 TYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMD-V-PDCYHIFPTANDT---FFMHCRDGSLAKVGYGTKGN 179 (352)
T ss_pred CccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEe-C-CCCcEEEEecCCc---cEEEeecCceEEEEecCCCc
Confidence 2334789999999999876 3 6899999999999998887 2 1211222222211 12223344444333322111
Q ss_pred ceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCcceeecccccCCCCCCceeecc
Q 017194 182 NKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSK 261 (375)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~ 261 (375)
...-... -..... ......+ .+.+. +++++.+... |.|.+.|+..........
T Consensus 180 ~~~~~~~--vf~~~~-~~v~~rP----~~~~~-----dg~~~~vs~e-G~V~~id~~~~~~~~~~~-------------- 232 (352)
T TIGR02658 180 PKIKPTE--VFHPED-EYLINHP----AYSNK-----SGRLVWPTYT-GKIFQIDLSSGDAKFLPA-------------- 232 (352)
T ss_pred eEEeeee--eecCCc-cccccCC----ceEcC-----CCcEEEEecC-CeEEEEecCCCcceecce--------------
Confidence 1110000 000000 0000111 22332 6777777776 999999976532211100
Q ss_pred cccceeeeeeeecCCcceeEeeee--e--cCCCccEEEEEEeecCCCCcEEEEec----------CCCeEEEEeCCCcee
Q 017194 262 VNIRDAEMEILDQSGGKRLHLDYS--V--GGHTAAASCVAFSMFGERGKYLISGG----------NDKLVKVWDCSRFQG 327 (375)
Q Consensus 262 ~g~~~~~~~~~~~~~~~~~~~~~~--~--~~~~~~v~~~~~s~~~~~~~~l~s~~----------~dg~i~iwd~~~~~~ 327 (375)
+..+.. . .-....+.-++++ ++++.+.... ..+.|.++|..+.+
T Consensus 233 ------------------~~~~~~~~~~~~wrP~g~q~ia~~---~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~k- 290 (352)
T TIGR02658 233 ------------------IEAFTEAEKADGWRPGGWQQVAYH---RARDRIYLLADQRAKWTHKTASRFLFVVDAKTGK- 290 (352)
T ss_pred ------------------eeeccccccccccCCCcceeEEEc---CCCCEEEEEecCCccccccCCCCEEEEEECCCCe-
Confidence 000000 0 0123344458898 8888777632 22579999999984
Q ss_pred eeecchhhhhhhhcccccceeeeeecCCCCC-cEEEee-CCCeEEEEec
Q 017194 328 VQTSINNDLLIKNINLNKKVNWLCTTPTESE-NLVVCD-TSKVVKVYSI 374 (375)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~l~s~~-~dg~v~iw~~ 374 (375)
.+..+ .-...+..++++| |++ +|++.. .++.|.+.|.
T Consensus 291 --------vi~~i-~vG~~~~~iavS~-Dgkp~lyvtn~~s~~VsViD~ 329 (352)
T TIGR02658 291 --------RLRKI-ELGHEIDSINVSQ-DAKPLLYALSTGDKTLYIFDA 329 (352)
T ss_pred --------EEEEE-eCCCceeeEEECC-CCCeEEEEeCCCCCcEEEEEC
Confidence 33222 2345788999999 888 777666 6788999886
No 262
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.54 E-value=8.6e-12 Score=107.17 Aligned_cols=220 Identities=10% Similarity=0.067 Sum_probs=132.7
Q ss_pred CcEEEEecccCceeeEeeecCccEEEEEEeCCCCe--EEEEc-CC--CeEEEEECCCCCcccccccccCCCcceeEEEEc
Q 017194 38 GCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNED--IIYVS-SG--KEVKSFDVHMPASWRPLESYNYNKEEINQIVCN 112 (375)
Q Consensus 38 ~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~--l~~~~-~d--~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~ 112 (375)
..|.+.|...+.. +.+.........-+|+|||+. ++..+ .+ ..|.+.++.+++. ..+..+ .+.....+|+
T Consensus 165 ~~l~~~d~dG~~~-~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~-~~lt~~---~g~~~~p~wS 239 (428)
T PRK01029 165 GELWSVDYDGQNL-RPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAG-KKILAL---QGNQLMPTFS 239 (428)
T ss_pred ceEEEEcCCCCCc-eEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCc-eEeecC---CCCccceEEC
Confidence 3677777765543 445445566778899999975 32233 33 3688889886643 444444 3345568999
Q ss_pred CCCCeEEEEeC-CC----cEEEEeCcCc---eeeeeEecCcccceeEEEEeeCCCcEEEEeecCCeEEEe--eCCC-CCc
Q 017194 113 PKSSFLACADD-GG----DVKIIDIRQH---CLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMW--DFSK-GRP 181 (375)
Q Consensus 113 ~~~~~l~~~~~-dg----~i~iwd~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~w--d~~~-~~~ 181 (375)
|||+.|+..+. +| .+..|++..+ +..+... .........+|+|||+.++++...+|...+| ++.. +..
T Consensus 240 PDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~-~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~ 318 (428)
T PRK01029 240 PRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLN-EAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQS 318 (428)
T ss_pred CCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeec-CCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccc
Confidence 99998887653 22 3444676642 3323332 2233456789999998544444456654555 4432 222
Q ss_pred ceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecC---CcEEEEeCCCcceeecccccCCCCCCcee
Q 017194 182 NKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGD---GVVDVINIESELNISRSKSTTKPLKGSQS 258 (375)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~~~~~~~ 258 (375)
...+... ...+....|+| +|+.|+..+.+ ..|.+||+.+++..
T Consensus 319 ~~~lt~~-------------~~~~~~p~wSP------DG~~Laf~~~~~g~~~I~v~dl~~g~~~--------------- 364 (428)
T PRK01029 319 PRLLTKK-------------YRNSSCPAWSP------DGKKIAFCSVIKGVRQICVYDLATGRDY--------------- 364 (428)
T ss_pred eEEeccC-------------CCCccceeECC------CCCEEEEEEcCCCCcEEEEEECCCCCeE---------------
Confidence 3333211 23556788999 79988876543 36899998864321
Q ss_pred ecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEecC---CCeEEEEeCCCce
Q 017194 259 TSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGN---DKLVKVWDCSRFQ 326 (375)
Q Consensus 259 ~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~---dg~i~iwd~~~~~ 326 (375)
.+......+....|+ |||+.|+..+. ...|+++|+..++
T Consensus 365 --------------------------~Lt~~~~~~~~p~wS---pDG~~L~f~~~~~g~~~L~~vdl~~g~ 406 (428)
T PRK01029 365 --------------------------QLTTSPENKESPSWA---IDSLHLVYSAGNSNESELYLISLITKK 406 (428)
T ss_pred --------------------------EccCCCCCccceEEC---CCCCEEEEEECCCCCceEEEEECCCCC
Confidence 122222345668899 89988774332 4578899998763
No 263
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.53 E-value=1.1e-13 Score=128.43 Aligned_cols=193 Identities=15% Similarity=0.241 Sum_probs=159.2
Q ss_pred eecCCCceeEEEEecCCCCEEEEeCCCCcEEEEecccCceeeEeee-cCccEEEEEEeCCCCeEEEEcCCCeEEEEECCC
Q 017194 11 LRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDV-GNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHM 89 (375)
Q Consensus 11 l~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~-~~~~v~~l~~~~~~~~l~~~~~d~~i~iwd~~~ 89 (375)
++.|-..|.++.-+|. ..+.+||+.||.+++|....++.+..++. .+..|+.+.|+.+|+.+..+..||.+.+|...
T Consensus 2204 ~k~~v~~v~r~~sHp~-~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~- 2281 (2439)
T KOG1064|consen 2204 IKHPVENVRRMTSHPS-DPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQAS- 2281 (2439)
T ss_pred eecccCceeeecCCCC-CceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccC-
Confidence 4456677888888998 68899999999999999998888777652 34889999999999999999999999999987
Q ss_pred CCcccccccccCCCcceeEEEEcCCCCeEEEEe---CCCcEEEEeCcCc---eeeeeEecCcccceeEEEEeeCCCcEEE
Q 017194 90 PASWRPLESYNYNKEEINQIVCNPKSSFLACAD---DGGDVKIIDIRQH---CLYKSLRAGHSSICSSVQFIPWKPWEVI 163 (375)
Q Consensus 90 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---~dg~i~iwd~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~~l~ 163 (375)
.+++...+.|.....++.|-. ..+++++ .++.+.+||.--. ..+. . .|...++++++.|... +|+
T Consensus 2282 ---pk~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~--~-~H~~gaT~l~~~P~~q-lli 2352 (2439)
T KOG1064|consen 2282 ---PKPYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVH--T-CHDGGATVLAYAPKHQ-LLI 2352 (2439)
T ss_pred ---CcceeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccceee--e-ecCCCceEEEEcCcce-EEE
Confidence 577778888999999999876 4566654 5788999996532 2233 4 7999999999999988 899
Q ss_pred EeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCccee
Q 017194 164 SGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNI 243 (375)
Q Consensus 164 ~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~ 243 (375)
+|+.+|.|++||++..+..+.++. +. ...++++|+..|.|+||++......
T Consensus 2353 sggr~G~v~l~D~rqrql~h~~~~----------------------~~-------~~~~f~~~ss~g~ikIw~~s~~~ll 2403 (2439)
T KOG1064|consen 2353 SGGRKGEVCLFDIRQRQLRHTFQA----------------------LD-------TREYFVTGSSEGNIKIWRLSEFGLL 2403 (2439)
T ss_pred ecCCcCcEEEeehHHHHHHHHhhh----------------------hh-------hhheeeccCcccceEEEEccccchh
Confidence 999999999999998888776651 11 3778999999999999999975433
No 264
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.52 E-value=1e-10 Score=108.72 Aligned_cols=203 Identities=9% Similarity=0.066 Sum_probs=137.2
Q ss_pred CCceeEEEEecCCCCEEEEeCCCCcEEEE----ecccCceeeEeeecCccEEEEEEeCCCCeEEEEcCCCeEEEEECCC-
Q 017194 15 KATATCCIASRDRPGFVASSGEDGCICWF----DLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHM- 89 (375)
Q Consensus 15 ~~~i~~~~~~~~~~~~l~s~~~d~~i~iw----~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i~iwd~~~- 89 (375)
.+.|.++.+.++ ...++.+..+|.|.+. +..+.. +.....-...|.+++||||+..|+.++.++++.+-+-.=
T Consensus 75 ~~~ivs~~yl~d-~~~l~~~~~~Gdi~~~~~~~~~~~~~-~E~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~~fd 152 (928)
T PF04762_consen 75 NDKIVSFQYLAD-SESLCIALASGDIILVREDPDPDEDE-IEIVGSVDSGILAASWSPDEELLALVTGEGNLLLMTRDFD 152 (928)
T ss_pred CCcEEEEEeccC-CCcEEEEECCceEEEEEccCCCCCce-eEEEEEEcCcEEEEEECCCcCEEEEEeCCCEEEEEeccce
Confidence 467999999998 7788888889999999 544433 222333467999999999999999999888877654210
Q ss_pred ----------------------CCc--------ccc---------c-----ccccCCCcceeEEEEcCCCCeEEEEeC--
Q 017194 90 ----------------------PAS--------WRP---------L-----ESYNYNKEEINQIVCNPKSSFLACADD-- 123 (375)
Q Consensus 90 ----------------------~~~--------~~~---------~-----~~~~~~~~~v~~~~~~~~~~~l~~~~~-- 123 (375)
|+. .+. + ..+. ....-..++|-.||.++|+.+.
T Consensus 153 ~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s-~dd~~~~ISWRGDG~yFAVss~~~ 231 (928)
T PF04762_consen 153 PISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLS-WDDGRVRISWRGDGEYFAVSSVEP 231 (928)
T ss_pred EEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccc-cCCCceEEEECCCCcEEEEEEEEc
Confidence 000 000 0 0001 2234567889999999998874
Q ss_pred -C---CcEEEEeCcCceeeeeEecCcccceeEEEEeeCCCcEEEEeec---CCeEEEeeCCCCCcceEEecCCCCCCCCC
Q 017194 124 -G---GDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGL---DSKLVMWDFSKGRPNKIVNFGLPENNGNA 196 (375)
Q Consensus 124 -d---g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~---d~~i~~wd~~~~~~~~~~~~~~~~~~~~~ 196 (375)
. ..++||+-+ |....+-. .-.+--.+++|.|.|+ ++++... ...|.+|. ++|-.-..+.+...
T Consensus 232 ~~~~~R~iRVy~Re-G~L~stSE-~v~gLe~~l~WrPsG~-lIA~~q~~~~~~~VvFfE-rNGLrhgeF~l~~~------ 301 (928)
T PF04762_consen 232 ETGSRRVIRVYSRE-GELQSTSE-PVDGLEGALSWRPSGN-LIASSQRLPDRHDVVFFE-RNGLRHGEFTLRFD------ 301 (928)
T ss_pred CCCceeEEEEECCC-ceEEeccc-cCCCccCCccCCCCCC-EEEEEEEcCCCcEEEEEe-cCCcEeeeEecCCC------
Confidence 2 479999954 65544333 3333345789999998 6777654 35677777 44555555554310
Q ss_pred CcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCc
Q 017194 197 GQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESE 240 (375)
Q Consensus 197 ~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~ 240 (375)
.....+..+.|++ ++..||+...|. |.+|-..+.
T Consensus 302 ---~~~~~v~~l~Wn~------ds~iLAv~~~~~-vqLWt~~NY 335 (928)
T PF04762_consen 302 ---PEEEKVIELAWNS------DSEILAVWLEDR-VQLWTRSNY 335 (928)
T ss_pred ---CCCceeeEEEECC------CCCEEEEEecCC-ceEEEeeCC
Confidence 0245789999999 899999987664 999988863
No 265
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.52 E-value=1.3e-11 Score=102.90 Aligned_cols=194 Identities=13% Similarity=0.122 Sum_probs=149.9
Q ss_pred CCCEEEEeCCCCcEEEEecccCceeeEeeec---CccEEEEEEe------C--------------CCCeEEEEcCCCeEE
Q 017194 27 RPGFVASSGEDGCICWFDLRSKDVQLVTDVG---NGPVTSLCFK------S--------------GNEDIIYVSSGKEVK 83 (375)
Q Consensus 27 ~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~---~~~v~~l~~~------~--------------~~~~l~~~~~d~~i~ 83 (375)
...++|....||.+++|+..+++....+... .+...+..|. | +...++-|...|.|.
T Consensus 4 ~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v~ 83 (541)
T KOG4547|consen 4 ALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSVL 83 (541)
T ss_pred hhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccEE
Confidence 3689999999999999999998876666421 3334444442 2 334577788889999
Q ss_pred EEECCCCCcccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCceeeeeEecCcccceeEEEEeeCCCcEEE
Q 017194 84 SFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVI 163 (375)
Q Consensus 84 iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~ 163 (375)
+|+...++....+ .-..|.+.|.++.++.+-..|.+++.|+.+..|+....+.++.++ .....+.+++.+||+. +++
T Consensus 84 ~ys~~~g~it~~~-st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~-~~~~~~~sl~is~D~~-~l~ 160 (541)
T KOG4547|consen 84 LYSVAGGEITAKL-STDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWK-EQKPLVSSLCISPDGK-ILL 160 (541)
T ss_pred EEEecCCeEEEEE-ecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeec-cCCCccceEEEcCCCC-EEE
Confidence 9999876543333 335688999999999998999999999999999999999999999 7888999999999998 788
Q ss_pred EeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEE-EecCCcEEEEeCCC
Q 017194 164 SGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVV-AKGDGVVDVINIES 239 (375)
Q Consensus 164 ~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~-~~~dg~i~i~d~~~ 239 (375)
+++ ++|++||+++++.+..+. + |.++|.++.|... +..-.|.++.+ +..+..+.+|-...
T Consensus 161 ~as--~~ik~~~~~~kevv~~ft-g------------h~s~v~t~~f~~~-~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 161 TAS--RQIKVLDIETKEVVITFT-G------------HGSPVRTLSFTTL-IDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred ecc--ceEEEEEccCceEEEEec-C------------CCcceEEEEEEEe-ccccccceeeeccccccceeEEEEEc
Confidence 887 689999999999999987 4 6889999999762 00111455444 44566677776654
No 266
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.50 E-value=2.1e-13 Score=112.79 Aligned_cols=283 Identities=11% Similarity=0.106 Sum_probs=178.4
Q ss_pred CeeeecCCCceeEEEEecCCCCEEEEeCCCCcEEEEecccC-------ceeeEeeecCccEEEEEEeCCCCeEEEEcCCC
Q 017194 8 PRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSK-------DVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGK 80 (375)
Q Consensus 8 ~~~l~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~-------~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~ 80 (375)
+..+.||+..|..++--.+ .+-+++++.|.+|++|.++.. .+..+++.|+.+|.++.|..+.++++ +.|+
T Consensus 728 L~nf~GH~~~iRai~AidN-ENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~--ScD~ 804 (1034)
T KOG4190|consen 728 LCNFTGHQEKIRAIAAIDN-ENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIA--SCDG 804 (1034)
T ss_pred eecccCcHHHhHHHHhccc-ccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceee--eccC
Confidence 4567899999998876655 678999999999999998642 35677889999999999998887776 4589
Q ss_pred eEEEEECCCCCcccccccccCCCcceeEEEEcCC--CCeEEEE-eCCCcEEEEeCcCceeeeeEec----CcccceeEEE
Q 017194 81 EVKSFDVHMPASWRPLESYNYNKEEINQIVCNPK--SSFLACA-DDGGDVKIIDIRQHCLYKSLRA----GHSSICSSVQ 153 (375)
Q Consensus 81 ~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~----~~~~~v~~~~ 153 (375)
.|.+||.--++.+..+..-.. .+.+..+...++ ...+.+| +...+|+++|.+..+-...++. +.+.-+++++
T Consensus 805 giHlWDPFigr~Laq~~dapk-~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~ia 883 (1034)
T KOG4190|consen 805 GIHLWDPFIGRLLAQMEDAPK-EGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIA 883 (1034)
T ss_pred cceeecccccchhHhhhcCcc-cCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEE
Confidence 999999876554443332222 233444444443 3444444 6788999999998766555541 3456789999
Q ss_pred EeeCCCcEEEEeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEE
Q 017194 154 FIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVD 233 (375)
Q Consensus 154 ~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~ 233 (375)
..+.|+ .++.+-.+|.|.+.|.++|+.+..+..- ......++- |..+.|+....|.++.
T Consensus 884 Va~~GN-~lAa~LSnGci~~LDaR~G~vINswrpm-------------ecdllqlaa-------psdq~L~~saldHsla 942 (1034)
T KOG4190|consen 884 VADKGN-KLAAALSNGCIAILDARNGKVINSWRPM-------------ECDLLQLAA-------PSDQALAQSALDHSLA 942 (1034)
T ss_pred eccCcc-hhhHHhcCCcEEEEecCCCceeccCCcc-------------cchhhhhcC-------chhHHHHhhcccceeE
Confidence 999999 5999999999999999999887765421 111222222 1456666666677777
Q ss_pred E-EeCCCcceeecccccCCCCC------Cceeecccccceeeeee-eecCCcceeEeeeeecCCCccEEEEEEeecCCCC
Q 017194 234 V-INIESELNISRSKSTTKPLK------GSQSTSKVNIRDAEMEI-LDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERG 305 (375)
Q Consensus 234 i-~d~~~~~~~~~~~~~~~~~~------~~~~~s~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~ 305 (375)
+ |-...+........++.+.. .++....+|+.+.+... .......+...+ .-....+..++++.- |-+
T Consensus 943 VnWhaldgimh~q~kpppepahflqsvgpSLV~a~~Gn~lgVYad~a~~ha~stitKi-R~d~f~G~lTala~L---PLN 1018 (1034)
T KOG4190|consen 943 VNWHALDGIMHLQDKPPPEPAHFLQSVGPSLVTAQNGNILGVYADSAELHAESTITKI-RPDEFPGTLTALAPL---PLN 1018 (1034)
T ss_pred eeehhcCCeeeeccCCCCcchhhhhccCceeEEeccCcEEEEEecchhhhhhhhhccc-cccccCCccceeeec---ccc
Confidence 7 77666555444444433322 12333344444332100 000001111111 111123456677766 555
Q ss_pred cEEEEecCCCeEEE
Q 017194 306 KYLISGGNDKLVKV 319 (375)
Q Consensus 306 ~~l~s~~~dg~i~i 319 (375)
.-++.|.+.|.|.+
T Consensus 1019 ~afLaGne~G~IaL 1032 (1034)
T KOG4190|consen 1019 CAFLAGNEHGAIAL 1032 (1034)
T ss_pred chhhccCCCCceee
Confidence 66677888887765
No 267
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.49 E-value=6.8e-11 Score=101.11 Aligned_cols=260 Identities=12% Similarity=0.082 Sum_probs=155.1
Q ss_pred CCEEEEeCCCCcEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEEcCCCeEEEEECCCCCcccccccccCCC--cc
Q 017194 28 PGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNK--EE 105 (375)
Q Consensus 28 ~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~--~~ 105 (375)
+..++.++.++.+..+|..+|+.+....... .+.+.-.. .+..++.++.++.++.||.++++..-......... ..
T Consensus 105 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~-~~~~~p~v-~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~ 182 (377)
T TIGR03300 105 GGLVFVGTEKGEVIALDAEDGKELWRAKLSS-EVLSPPLV-ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRG 182 (377)
T ss_pred CCEEEEEcCCCEEEEEECCCCcEeeeeccCc-eeecCCEE-ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecC
Confidence 4567788889999999999999876655322 22221111 24467777889999999999876543332211000 00
Q ss_pred eeEEEEcCCCCeEEEEeCCCcEEEEeCcCceeeeeEecCccc---c------e-eEEEEeeCCCcEEEEeecCCeEEEee
Q 017194 106 INQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSS---I------C-SSVQFIPWKPWEVISGGLDSKLVMWD 175 (375)
Q Consensus 106 v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~---~------v-~~~~~~~~~~~~l~~~~~d~~i~~wd 175 (375)
..+... .+..++.+..++.+..+|.++++.+......... . + ....+ .+. .++.++.+|.++.||
T Consensus 183 ~~sp~~--~~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~--~~~-~vy~~~~~g~l~a~d 257 (377)
T TIGR03300 183 SASPVI--ADGGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVV--DGG-QVYAVSYQGRVAALD 257 (377)
T ss_pred CCCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEE--ECC-EEEEEEcCCEEEEEE
Confidence 011111 1246778888899999999998876543311000 0 0 11112 233 577788899999999
Q ss_pred CCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCcceeecccccCCCCCC
Q 017194 176 FSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKG 255 (375)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~ 255 (375)
..+++.+...... ....... .+..+++++.+|.+..+|..+++......
T Consensus 258 ~~tG~~~W~~~~~---------------~~~~p~~--------~~~~vyv~~~~G~l~~~d~~tG~~~W~~~-------- 306 (377)
T TIGR03300 258 LRSGRVLWKRDAS---------------SYQGPAV--------DDNRLYVTDADGVVVALDRRSGSELWKND-------- 306 (377)
T ss_pred CCCCcEEEeeccC---------------CccCceE--------eCCEEEEECCCCeEEEEECCCCcEEEccc--------
Confidence 9999877665422 1111222 46778888899999999998764332110
Q ss_pred ceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEecCCCeEEEEeCCCceeeeecchhh
Q 017194 256 SQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINND 335 (375)
Q Consensus 256 ~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~ 335 (375)
.+.. ........ .+..|++++.+|.|+++|..+++
T Consensus 307 -----------------------------~~~~--~~~ssp~i-----~g~~l~~~~~~G~l~~~d~~tG~--------- 341 (377)
T TIGR03300 307 -----------------------------ELKY--RQLTAPAV-----VGGYLVVGDFEGYLHWLSREDGS--------- 341 (377)
T ss_pred -----------------------------cccC--CccccCEE-----ECCEEEEEeCCCEEEEEECCCCC---------
Confidence 1111 11112222 34588889999999999999984
Q ss_pred hhhhhcccccceeeeeecCCCCCcEEEeeCCCeEEEE
Q 017194 336 LLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVY 372 (375)
Q Consensus 336 ~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~iw 372 (375)
.+.....+...+..--... + +.|+.++.||.|+.+
T Consensus 342 ~~~~~~~~~~~~~~sp~~~-~-~~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 342 FVARLKTDGSGIASPPVVV-G-DGLLVQTRDGDLYAF 376 (377)
T ss_pred EEEEEEcCCCccccCCEEE-C-CEEEEEeCCceEEEe
Confidence 3333333332222221122 4 358899999999876
No 268
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.48 E-value=1.6e-10 Score=94.86 Aligned_cols=276 Identities=12% Similarity=0.082 Sum_probs=182.4
Q ss_pred CceeEEEEecCCCCEEEEeCCCC---------------cEEEEecccCceeeEeeecCcc--EE-EEEEeCCCCeEEEEc
Q 017194 16 ATATCCIASRDRPGFVASSGEDG---------------CICWFDLRSKDVQLVTDVGNGP--VT-SLCFKSGNEDIIYVS 77 (375)
Q Consensus 16 ~~i~~~~~~~~~~~~l~s~~~d~---------------~i~iw~~~~~~~~~~~~~~~~~--v~-~l~~~~~~~~l~~~~ 77 (375)
..|.-+.|+|. +++|.+=+..+ .+.+||+.+|..+..+.....+ .. -+.|+-+.+++|-.
T Consensus 72 ~~V~~~~fSP~-~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARv- 149 (561)
T COG5354 72 PDVKYLDFSPN-EKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARV- 149 (561)
T ss_pred CCceecccCcc-cceeeeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhh-
Confidence 45888999998 89999865433 4999999999998888776555 55 67888888877655
Q ss_pred CCCeEEEEECCCCCcccccccccCCCcceeEEEEcCCC--CeEEE-----EeCCCcEEEEeCcCceeeeeEecCccccee
Q 017194 78 SGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKS--SFLAC-----ADDGGDVKIIDIRQHCLYKSLRAGHSSICS 150 (375)
Q Consensus 78 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~-----~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~ 150 (375)
....++|+++...-...+...+. ...|....|+|.+ ..|+. ....+.+++|.+..++.+.+-. -....=.
T Consensus 150 v~~sl~i~e~t~n~~~~p~~~lr--~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~-lfk~~~~ 226 (561)
T COG5354 150 VGSSLYIHEITDNIEEHPFKNLR--PVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKN-LFKVSGV 226 (561)
T ss_pred ccCeEEEEecCCccccCchhhcc--ccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeee-eEeeccc
Confidence 35689999973222223344432 4678899999964 33443 3467889999998665554332 2223335
Q ss_pred EEEEeeCCCcEEEEee----------cCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCC
Q 017194 151 SVQFIPWKPWEVISGG----------LDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTN 220 (375)
Q Consensus 151 ~~~~~~~~~~~l~~~~----------~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 220 (375)
.+.|.+.|+++++-.- ....+++++++......... ..++|...+|.| .+
T Consensus 227 qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i~V~~~--------------~~~pVhdf~W~p------~S 286 (561)
T COG5354 227 QLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSIPVEKD--------------LKDPVHDFTWEP------LS 286 (561)
T ss_pred EEEEecCCceEEEEEEEeeecccceeccceEEEEeecccccceecc--------------ccccceeeeecc------cC
Confidence 6789999986444321 13567888887433322222 257899999999 46
Q ss_pred CEEEEE--ecCCcEEEEeCCCcceeecccccCCCCCCceeecccccceeeeeeeecC-------CcceeEeeeeecCCCc
Q 017194 221 KICVVA--KGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQS-------GGKRLHLDYSVGGHTA 291 (375)
Q Consensus 221 ~~l~~~--~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~ 291 (375)
+.+++. -.+-.+.++|++.. .... .+......+.|+|.++++.+.|.-+.. ...+..+...+.+.
T Consensus 287 ~~F~vi~g~~pa~~s~~~lr~N-l~~~---~Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~~~-- 360 (561)
T COG5354 287 SRFAVISGYMPASVSVFDLRGN-LRFY---FPEQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGAFNGL-- 360 (561)
T ss_pred CceeEEecccccceeecccccc-eEEe---cCCcccccccccCcccEEEEecCCccccceEEeccCCceEEEEEeecC--
Confidence 555544 47788999999976 2221 223445677899999998874432221 12233444444443
Q ss_pred cEEEEEEeecCCCCcEEEEec------CCCeEEEEeCCCc
Q 017194 292 AASCVAFSMFGERGKYLISGG------NDKLVKVWDCSRF 325 (375)
Q Consensus 292 ~v~~~~~s~~~~~~~~l~s~~------~dg~i~iwd~~~~ 325 (375)
...-+.|+ ||++++.+.. .|..|.|||+...
T Consensus 361 n~s~~~ws---pd~qF~~~~~ts~k~~~Dn~i~l~~v~g~ 397 (561)
T COG5354 361 NTSYCDWS---PDGQFYDTDTTSEKLRVDNSIKLWDVYGA 397 (561)
T ss_pred CceEeecc---CCceEEEecCCCcccccCcceEEEEecCc
Confidence 23456788 9999988764 3889999999886
No 269
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=99.46 E-value=4.1e-11 Score=103.19 Aligned_cols=330 Identities=14% Similarity=0.084 Sum_probs=186.2
Q ss_pred CCCCCeeeecCCCceeEEEEecCC-----------CCEEEEeCCCCcEEEEecccCceeeEeeecCccEEEEEEeC---C
Q 017194 4 AEAKPRRLRGHKATATCCIASRDR-----------PGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKS---G 69 (375)
Q Consensus 4 ~~~~~~~l~~h~~~i~~~~~~~~~-----------~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~---~ 69 (375)
+.+.++.+.-|...|+.+.|.|.. .-+||++...|.|.+||...+..+..++.|..++..++|-+ +
T Consensus 44 s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~ 123 (1062)
T KOG1912|consen 44 SLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVINWLSHSNDSVQDLCWVPARDD 123 (1062)
T ss_pred hhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhhhhcCCCcchhheeeeeccCc
Confidence 456778888999999999998741 12578888899999999999998999999999999999975 3
Q ss_pred C-CeEEEEcCCCeEEEEECCCCCcccccccccCCCcceeEEEEcC-CCCeEEEE--------------------------
Q 017194 70 N-EDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNP-KSSFLACA-------------------------- 121 (375)
Q Consensus 70 ~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~-------------------------- 121 (375)
. ..|++-.....+.+|+..+|+..-. +........|+.+.| |.+.+..-
T Consensus 124 Srd~LlaIh~ss~lvLwntdtG~k~Wk---~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI 200 (1062)
T KOG1912|consen 124 SRDVLLAIHGSSTLVLWNTDTGEKFWK---YDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQI 200 (1062)
T ss_pred chheeEEecCCcEEEEEEccCCceeec---cccCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEE
Confidence 3 4567777788999999888653221 111122333344444 22222222
Q ss_pred ------------------------------------------------eCCCcEEEEeCcCceeeeeEecCcccceeEEE
Q 017194 122 ------------------------------------------------DDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQ 153 (375)
Q Consensus 122 ------------------------------------------------~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~ 153 (375)
.-...+.++|++-..++.... -..+.+.-+.
T Consensus 201 ~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~prellv~dle~~~~l~vvp-ier~~akfv~ 279 (1062)
T KOG1912|consen 201 TSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPRELLVFDLEYECCLAVVP-IERGGAKFVD 279 (1062)
T ss_pred ecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEeccceEEEcchhhceeEEEE-eccCCcceeE
Confidence 223344444544444444444 3445556677
Q ss_pred EeeCCC-cEEEEeecCCeEEEeeCCCCCcceEE-----ecCCCCCCCCCCcc-cCCCceeEEeecCCccccCCCCEEEEE
Q 017194 154 FIPWKP-WEVISGGLDSKLVMWDFSKGRPNKIV-----NFGLPENNGNAGQC-YNPAFVHAIAIPDADMLDKTNKICVVA 226 (375)
Q Consensus 154 ~~~~~~-~~l~~~~~d~~i~~wd~~~~~~~~~~-----~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~l~~~ 226 (375)
+.|+.+ ..|++.-.||.+.+|-.+........ .....+ +-...+ .....+...+..|. +...+++-
T Consensus 280 vlP~~~rd~LfclH~nG~ltirvrk~~~~~f~~~~~~l~~dl~~--Q~~~vr~m~~~rp~~~~~cPs-----~~sa~avl 352 (1062)
T KOG1912|consen 280 VLPDPRRDALFCLHSNGRLTIRVRKEEPTEFKKPNASLSMDLGE--QVHVVRPMEEFRPVIGASCPS-----TPSALAVL 352 (1062)
T ss_pred eccCCCcceEEEEecCCeEEEEEeeccCccccccchhhcccccc--ceEEEeechhcccceeecCCC-----Chhhhhhh
Confidence 777764 26888889999999986542111111 100000 000000 01112222333332 35556666
Q ss_pred ecCCcEEEEeCCCcceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeec-----
Q 017194 227 KGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMF----- 301 (375)
Q Consensus 227 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~----- 301 (375)
-.+|.+.+|.+.+++..........+....+.|.-+...+. ...+..+....+|.....+....|.
T Consensus 353 ~s~g~~~~w~l~~~ri~~~~~s~~iel~~pf~f~~~~~~v~---------k~~l~~LS~dg~h~sGs~~~~~~p~p~~t~ 423 (1062)
T KOG1912|consen 353 YSSGDSTFWQLSNGRIHLDYRSSSIELVLPFDFNLSTKLVG---------KTSLISLSDDGSHSSGSTCVRMRPMPELTK 423 (1062)
T ss_pred hhcchhHHHhhhcCCcCcccccccccccccccccCceeehh---------hccccchhhcCCCCCCceeeecccCcccce
Confidence 67888999999875443322211111111111111111110 0000001111123222222222210
Q ss_pred ---CCCC-------cEEEEecCCCeEEEEeCCCceeeeecchhhhhhhhcccccceeeeeecCCCCCcEEEee
Q 017194 302 ---GERG-------KYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCD 364 (375)
Q Consensus 302 ---~~~~-------~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~ 364 (375)
.|.+ .++|.|...|+|.++|+.++ .+.+.+..|+..|.++.|.. .. .|++.+
T Consensus 424 ~~~~p~~n~~~~~~pLvAvGT~sGTV~vvdvst~---------~v~~~fsvht~~VkgleW~g-~s-slvSfs 485 (1062)
T KOG1912|consen 424 VENDPGGNTPAGTVPLVAVGTNSGTVDVVDVSTN---------AVAASFSVHTSLVKGLEWLG-NS-SLVSFS 485 (1062)
T ss_pred eecCCCCCccceeeeeEEeecCCceEEEEEecch---------hhhhhhcccccceeeeeecc-ce-eEEEee
Confidence 1222 37889999999999999998 77888899999999999976 43 355543
No 270
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.46 E-value=9.7e-13 Score=112.33 Aligned_cols=298 Identities=15% Similarity=0.143 Sum_probs=194.5
Q ss_pred CCceeEEEEecCCCCEEEEeCCCCcEEEEecccC-ceeeEee-ecCccEEEEEEeCCC--CeEEEEcCCCeEEEEECCCC
Q 017194 15 KATATCCIASRDRPGFVASSGEDGCICWFDLRSK-DVQLVTD-VGNGPVTSLCFKSGN--EDIIYVSSGKEVKSFDVHMP 90 (375)
Q Consensus 15 ~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~-~~~~~~~-~~~~~v~~l~~~~~~--~~l~~~~~d~~i~iwd~~~~ 90 (375)
.+++..+..+|. |+-+|.++.-| +.+.|+... .+..-+. ...-.|-.+.|+|.. .+-++......-.+|++...
T Consensus 24 ~~~~~a~si~p~-grdi~lAsr~g-l~i~dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVsts~qkaiiwnlA~s 101 (1081)
T KOG0309|consen 24 DGGFNAVSINPS-GRDIVLASRQG-LYIIDLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKS 101 (1081)
T ss_pred cCcccceeeccc-cchhhhhhhcC-eEEEeccCCCCCceeeeccCcchhcceecccCCCCceeEEecCcchhhhhhhhcC
Confidence 567888999998 78888888877 556676543 3333232 113456678887753 34444444566679998765
Q ss_pred CcccccccccCCCcceeEEEEcCCC-CeEEEEeCCCcEEEEeCcCce-eeeeEecCcccceeEEEEeeCCCcEEEEeecC
Q 017194 91 ASWRPLESYNYNKEEINQIVCNPKS-SFLACADDGGDVKIIDIRQHC-LYKSLRAGHSSICSSVQFIPWKPWEVISGGLD 168 (375)
Q Consensus 91 ~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d 168 (375)
.....--.+.+|...|+.+.|+|+. ..+++++.|-.+..||+++.. .+..+. .-......++|+-..+ .+.+.+..
T Consensus 102 s~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~-~w~s~asqVkwnyk~p-~vlasshg 179 (1081)
T KOG0309|consen 102 SSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTS-SWRSAASQVKWNYKDP-NVLASSHG 179 (1081)
T ss_pred CccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeee-cccccCceeeecccCc-chhhhccC
Confidence 4433334456889999999999965 468889999999999998753 444554 3445668899998777 46666677
Q ss_pred CeEEEeeCCCCC-cceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCcceeeccc
Q 017194 169 SKLVMWDFSKGR-PNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSK 247 (375)
Q Consensus 169 ~~i~~wd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 247 (375)
..|++||++.|. ++..++ + +...++.++|... -...+.+.+.||+|++||.........
T Consensus 180 ~~i~vwd~r~gs~pl~s~K-~------------~vs~vn~~~fnr~-----~~s~~~s~~~d~tvkfw~y~kSt~e~~-- 239 (1081)
T KOG0309|consen 180 NDIFVWDLRKGSTPLCSLK-G------------HVSSVNSIDFNRF-----KYSEIMSSSNDGTVKFWDYSKSTTESK-- 239 (1081)
T ss_pred CceEEEeccCCCcceEEec-c------------cceeeehHHHhhh-----hhhhhcccCCCCceeeecccccccccc--
Confidence 789999999875 444444 2 3567788888753 456788999999999999985321111
Q ss_pred ccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEecCCCeEEEEeCCCcee
Q 017194 248 STTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQG 327 (375)
Q Consensus 248 ~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd~~~~~~ 327 (375)
.......+|..-.+.||+ +|.++.-.-.++.+.+++.++...
T Consensus 240 -------------------------------------~~vtt~~piw~~r~~Pfg-~g~~~mp~~G~n~v~~~~c~n~d~ 281 (1081)
T KOG0309|consen 240 -------------------------------------RTVTTNFPIWRGRYLPFG-EGYCIMPMVGGNMVPQLRCENSDL 281 (1081)
T ss_pred -------------------------------------eeccccCcceeccccccC-ceeEeccccCCeeeeeccccchhh
Confidence 111224455665666442 343433222233455554444321
Q ss_pred ee-ecchhhhhhhhcccccceeeeeecCC---CC------CcEEEeeCCCeEEEEec
Q 017194 328 VQ-TSINNDLLIKNINLNKKVNWLCTTPT---ES------ENLVVCDTSKVVKVYSI 374 (375)
Q Consensus 328 ~~-~~~~~~~~~~~~~~~~~v~~~~~~~~---~~------~~l~s~~~dg~v~iw~~ 374 (375)
.+ .......+..+.||.+.|....|-.. ++ -.|++-+.|..+++|-+
T Consensus 282 e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI 338 (1081)
T KOG0309|consen 282 EWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPI 338 (1081)
T ss_pred hhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecCCceEeeec
Confidence 11 11122566788899999887777541 11 15999999999999976
No 271
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.46 E-value=1.2e-12 Score=121.81 Aligned_cols=216 Identities=15% Similarity=0.206 Sum_probs=159.8
Q ss_pred EEEeCCCCcEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEEcCCCeEEEEECCCCCcccccccccCCCcceeEEE
Q 017194 31 VASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIV 110 (375)
Q Consensus 31 l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~ 110 (375)
+.....++...-|..+-+.. .+..+-..|.++.-+|...+.++|+.||.+++|....+.......... ...|+.+.
T Consensus 2183 ~~~~n~~~~~~tq~~~~~~~--~~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g--~s~vtr~~ 2258 (2439)
T KOG1064|consen 2183 FTPSNLPWLGSTQTSRGASV--MIKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAG--NSRVTRSR 2258 (2439)
T ss_pred CCcccCCccccceeccccee--EeecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccC--cchhhhhh
Confidence 33333444444454332221 122345667788888988999999999999999998776555554432 47899999
Q ss_pred EcCCCCeEEEEeCCCcEEEEeCcCceeeeeEecCcccceeEEEEeeCCCcEEEEee---cCCeEEEeeCCCCCcceEEec
Q 017194 111 CNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGG---LDSKLVMWDFSKGRPNKIVNF 187 (375)
Q Consensus 111 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~---~d~~i~~wd~~~~~~~~~~~~ 187 (375)
|+.+|+.+..+..||.+.+|.+. .+.....+ .|.....++.|... .+++++ .++.+.+||........-+..
T Consensus 2259 f~~qGnk~~i~d~dg~l~l~q~~-pk~~~s~q-chnk~~~Df~Fi~s---~~~tag~s~d~~n~~lwDtl~~~~~s~v~~ 2333 (2439)
T KOG1064|consen 2259 FNHQGNKFGIVDGDGDLSLWQAS-PKPYTSWQ-CHNKALSDFRFIGS---LLATAGRSSDNRNVCLWDTLLPPMNSLVHT 2333 (2439)
T ss_pred hcccCCceeeeccCCceeecccC-Ccceeccc-cCCccccceeeeeh---hhhccccCCCCCcccchhcccCcccceeee
Confidence 99999999999999999999986 66677777 78888899998873 577664 578999999764433222222
Q ss_pred CCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCcceeecccccCCCCCCceeeccccccee
Q 017194 188 GLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDA 267 (375)
Q Consensus 188 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~ 267 (375)
. |...++++++-| ..++|++|+.+|.|++||++..+
T Consensus 2334 ~------------H~~gaT~l~~~P------~~qllisggr~G~v~l~D~rqrq-------------------------- 2369 (2439)
T KOG1064|consen 2334 C------------HDGGATVLAYAP------KHQLLISGGRKGEVCLFDIRQRQ-------------------------- 2369 (2439)
T ss_pred e------------cCCCceEEEEcC------cceEEEecCCcCcEEEeehHHHH--------------------------
Confidence 3 688999999999 79999999999999999999531
Q ss_pred eeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEecCCCeEEEEeCCCce
Q 017194 268 EMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQ 326 (375)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd~~~~~ 326 (375)
+.+.++. + ....++++|+..|.|+||++....
T Consensus 2370 --------------l~h~~~~---------~----~~~~~f~~~ss~g~ikIw~~s~~~ 2401 (2439)
T KOG1064|consen 2370 --------------LRHTFQA---------L----DTREYFVTGSSEGNIKIWRLSEFG 2401 (2439)
T ss_pred --------------HHHHhhh---------h----hhhheeeccCcccceEEEEccccc
Confidence 1222221 2 235689999999999999999873
No 272
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.44 E-value=1.4e-09 Score=88.92 Aligned_cols=153 Identities=12% Similarity=0.088 Sum_probs=116.3
Q ss_pred EecCCCCEEEEeCCCCcEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEEcCCC-eEEEEECCCCCcccccccccC
Q 017194 23 ASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGK-EVKSFDVHMPASWRPLESYNY 101 (375)
Q Consensus 23 ~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~-~i~iwd~~~~~~~~~~~~~~~ 101 (375)
|++-+|++++..+. |...|.+...+-.++. +|...|.-..+..+++-++.|..|| .+-|+|.++++..+.. .
T Consensus 327 fa~~~Gd~ia~VSR-GkaFi~~~~~~~~iqv--~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr~e----~ 399 (668)
T COG4946 327 FAVVNGDYIALVSR-GKAFIMRPWDGYSIQV--GKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKRIE----K 399 (668)
T ss_pred hccCCCcEEEEEec-CcEEEECCCCCeeEEc--CCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEEee----C
Confidence 45555788887775 6777777554443322 3567788888888888899999998 8999999976532222 2
Q ss_pred CCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCceeeeeEecCcccceeEEEEeeCCCcEEEEeecC----CeEEEeeCC
Q 017194 102 NKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLD----SKLVMWDFS 177 (375)
Q Consensus 102 ~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d----~~i~~wd~~ 177 (375)
.-+.|.++..+++|++++++.....+.+.|++++.....-+ ...+-|+.++|+|+++ .+|-+--+ ..|+++|+.
T Consensus 400 ~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv~~idk-S~~~lItdf~~~~nsr-~iAYafP~gy~tq~Iklydm~ 477 (668)
T COG4946 400 DLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDK-SEYGLITDFDWHPNSR-WIAYAFPEGYYTQSIKLYDMD 477 (668)
T ss_pred CccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEecc-cccceeEEEEEcCCce-eEEEecCcceeeeeEEEEecC
Confidence 35789999999999999999999999999999987755444 5667899999999998 57766554 479999999
Q ss_pred CCCcceE
Q 017194 178 KGRPNKI 184 (375)
Q Consensus 178 ~~~~~~~ 184 (375)
.++....
T Consensus 478 ~~Kiy~v 484 (668)
T COG4946 478 GGKIYDV 484 (668)
T ss_pred CCeEEEe
Confidence 7765443
No 273
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.44 E-value=2.3e-09 Score=87.90 Aligned_cols=256 Identities=12% Similarity=0.074 Sum_probs=149.1
Q ss_pred CCCCCeeeecCCCceeEEEEecCCCCEEEEe-C---------CCCcEEEEecccCceeeEeeecCc-------cEEEEEE
Q 017194 4 AEAKPRRLRGHKATATCCIASRDRPGFVASS-G---------EDGCICWFDLRSKDVQLVTDVGNG-------PVTSLCF 66 (375)
Q Consensus 4 ~~~~~~~l~~h~~~i~~~~~~~~~~~~l~s~-~---------~d~~i~iw~~~~~~~~~~~~~~~~-------~v~~l~~ 66 (375)
+++.+.++..-..+-- + ++|| ++.|+.+ + .+..|.+||..+.+.+..+..... ....+++
T Consensus 36 ~~~v~g~i~~G~~P~~-~-~spD-g~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~l 112 (352)
T TIGR02658 36 AGRVLGMTDGGFLPNP-V-VASD-GSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSL 112 (352)
T ss_pred CCEEEEEEEccCCCce-e-ECCC-CCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEE
Confidence 3344444543333322 4 8999 5665555 4 478999999999999888874322 2347889
Q ss_pred eCCCCeEEEEc-C-CCeEEEEECCCCCcccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcC-cee-ee---
Q 017194 67 KSGNEDIIYVS-S-GKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQ-HCL-YK--- 139 (375)
Q Consensus 67 ~~~~~~l~~~~-~-d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~-~~--- 139 (375)
+|||++|+... . +..|.+.|+.+++....+.. .....-...+++..+ +-+.||......+.+ ++. ..
T Consensus 113 s~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~v----p~~~~vy~t~e~~~~--~~~~Dg~~~~v~~d~~g~~~~~~~~ 186 (352)
T TIGR02658 113 TPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDV----PDCYHIFPTANDTFF--MHCRDGSLAKVGYGTKGNPKIKPTE 186 (352)
T ss_pred CCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeC----CCCcEEEEecCCccE--EEeecCceEEEEecCCCceEEeeee
Confidence 99999988776 3 68999999998766655554 122222222222222 112344443333221 111 11
Q ss_pred eEecCcccce-eEEEEee-CCCcEEEEeecCCeEEEeeCCCCCc-----ceEEecCCCCCCCCCCcccCCCceeEEeecC
Q 017194 140 SLRAGHSSIC-SSVQFIP-WKPWEVISGGLDSKLVMWDFSKGRP-----NKIVNFGLPENNGNAGQCYNPAFVHAIAIPD 212 (375)
Q Consensus 140 ~~~~~~~~~v-~~~~~~~-~~~~~l~~~~~d~~i~~wd~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 212 (375)
.+. ....++ ..-.|.+ ++. .+....+ |+|.+.|+..... ...+... ....-+.+....-++++|
T Consensus 187 vf~-~~~~~v~~rP~~~~~dg~-~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~------~~~~~wrP~g~q~ia~~~ 257 (352)
T TIGR02658 187 VFH-PEDEYLINHPAYSNKSGR-LVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEA------EKADGWRPGGWQQVAYHR 257 (352)
T ss_pred eec-CCccccccCCceEcCCCc-EEEEecC-CeEEEEecCCCcceecceeeecccc------ccccccCCCcceeEEEcC
Confidence 111 100000 0014566 676 4555444 9999999754332 2222111 011123455556699998
Q ss_pred CccccCCCCEEEEEe----------cCCcEEEEeCCCcceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEe
Q 017194 213 ADMLDKTNKICVVAK----------GDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHL 282 (375)
Q Consensus 213 ~~~~~~~~~~l~~~~----------~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~ 282 (375)
+++.+++.. ..+.|.++|..+.+.
T Consensus 258 ------dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kv---------------------------------------- 291 (352)
T TIGR02658 258 ------ARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKR---------------------------------------- 291 (352)
T ss_pred ------CCCEEEEEecCCccccccCCCCEEEEEECCCCeE----------------------------------------
Confidence 788888743 225799999987532
Q ss_pred eeeecCCCccEEEEEEeecCCCCc-EEEEec-CCCeEEEEeCCCcee
Q 017194 283 DYSVGGHTAAASCVAFSMFGERGK-YLISGG-NDKLVKVWDCSRFQG 327 (375)
Q Consensus 283 ~~~~~~~~~~v~~~~~s~~~~~~~-~l~s~~-~dg~i~iwd~~~~~~ 327 (375)
+..+.. ...+..++++ ||++ +|++.. .++.|.++|..+++.
T Consensus 292 i~~i~v-G~~~~~iavS---~Dgkp~lyvtn~~s~~VsViD~~t~k~ 334 (352)
T TIGR02658 292 LRKIEL-GHEIDSINVS---QDAKPLLYALSTGDKTLYIFDAETGKE 334 (352)
T ss_pred EEEEeC-CCceeeEEEC---CCCCeEEEEeCCCCCcEEEEECcCCeE
Confidence 223222 3478999999 9999 777665 578899999999843
No 274
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.42 E-value=7.7e-10 Score=104.88 Aligned_cols=269 Identities=12% Similarity=0.125 Sum_probs=164.8
Q ss_pred eEEEEecCCCCEEEEeCCCCcEEEEecccCceeeEeee-c-------------CccEEEEEEeCCCCeEEEEcC-CCeEE
Q 017194 19 TCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDV-G-------------NGPVTSLCFKSGNEDIIYVSS-GKEVK 83 (375)
Q Consensus 19 ~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~-~-------------~~~v~~l~~~~~~~~l~~~~~-d~~i~ 83 (375)
..+++++.+++++++-..++.|+++|.. +..+..+.. . -.....+++.++++.|+.+.. .+.|+
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~-G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir 649 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLD-GNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALR 649 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCC-CCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEE
Confidence 3578887656778877888899999976 444333322 1 123578999998876665544 56899
Q ss_pred EEECCCCCccccccc-------ccCC-------CcceeEEEEcC-CCCeEEEEeCCCcEEEEeCcCceeeeeEec-----
Q 017194 84 SFDVHMPASWRPLES-------YNYN-------KEEINQIVCNP-KSSFLACADDGGDVKIIDIRQHCLYKSLRA----- 143 (375)
Q Consensus 84 iwd~~~~~~~~~~~~-------~~~~-------~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~----- 143 (375)
++|+.++.. ..+.. +.+. -.....++++| ++..+++...++.|++||..++... .+..
T Consensus 650 ~id~~~~~V-~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~-~~~G~G~~~ 727 (1057)
T PLN02919 650 EIDFVNETV-RTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTR-VFSGDGYER 727 (1057)
T ss_pred EEecCCCEE-EEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEE-EEecCCccc
Confidence 999876432 11110 0000 11235789999 4556666677889999998776542 2210
Q ss_pred ---C------cccceeEEEEeeCCCcEEEEeecCCeEEEeeCCCCCcceEEecCCCC---CC------CCCCcccCCCce
Q 017194 144 ---G------HSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPE---NN------GNAGQCYNPAFV 205 (375)
Q Consensus 144 ---~------~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~---~~------~~~~~~~~~~~v 205 (375)
+ .-.....|+++|+++.++++-+.++.|++||+.++..... ..+.+. .. ........-...
T Consensus 728 ~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~-~gg~~~~~~~l~~fG~~dG~g~~~~l~~P 806 (1057)
T PLN02919 728 NLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLL-AGGDPTFSDNLFKFGDHDGVGSEVLLQHP 806 (1057)
T ss_pred cCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEE-EecccccCcccccccCCCCchhhhhccCC
Confidence 0 1124567999999986667777889999999987653211 101000 00 000000001123
Q ss_pred eEEeecCCccccCCCCEEEEEecCCcEEEEeCCCcceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeee
Q 017194 206 HAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYS 285 (375)
Q Consensus 206 ~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~ 285 (375)
..+++++ +|+++++-..++.|++||..++......... . .-.+||. .
T Consensus 807 ~Gvavd~------dG~LYVADs~N~rIrviD~~tg~v~tiaG~G-~------~G~~dG~--------------------~ 853 (1057)
T PLN02919 807 LGVLCAK------DGQIYVADSYNHKIKKLDPATKRVTTLAGTG-K------AGFKDGK--------------------A 853 (1057)
T ss_pred ceeeEeC------CCcEEEEECCCCEEEEEECCCCeEEEEeccC-C------cCCCCCc--------------------c
Confidence 5788887 7888888889999999999875332111000 0 0000111 1
Q ss_pred ecCCCccEEEEEEeecCCCCcEEEEecCCCeEEEEeCCCcee
Q 017194 286 VGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQG 327 (375)
Q Consensus 286 ~~~~~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd~~~~~~ 327 (375)
..+.-.....++++ ++|+++++-+.++.|++||+.+++.
T Consensus 854 ~~a~l~~P~GIavd---~dG~lyVaDt~Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 854 LKAQLSEPAGLALG---ENGRLFVADTNNSLIRYLDLNKGEA 892 (1057)
T ss_pred cccccCCceEEEEe---CCCCEEEEECCCCEEEEEECCCCcc
Confidence 12233456789999 8999999999999999999988753
No 275
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.41 E-value=1.2e-12 Score=108.49 Aligned_cols=215 Identities=13% Similarity=0.104 Sum_probs=151.3
Q ss_pred eeEeeecCccEEEEEEeCCCCeEEEEcCCCeEEEEECCCCCc----ccccccccCCCcceeEEEEcCCCCeEEEEeCCCc
Q 017194 51 QLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPAS----WRPLESYNYNKEEINQIVCNPKSSFLACADDGGD 126 (375)
Q Consensus 51 ~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i~iwd~~~~~~----~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~ 126 (375)
+..+.+|...|..++--.+.+.+++++.|+++++|.++.... ....-++..|+.+|.++.|..+.++++++ ||.
T Consensus 728 L~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~g 805 (1034)
T KOG4190|consen 728 LCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--DGG 805 (1034)
T ss_pred eecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--cCc
Confidence 455678999999887777778899999999999999875221 12344677899999999999998888876 788
Q ss_pred EEEEeCcCceeeeeEec-CcccceeEEEEeeC--CCcEEEEeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCC
Q 017194 127 VKIIDIRQHCLYKSLRA-GHSSICSSVQFIPW--KPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPA 203 (375)
Q Consensus 127 i~iwd~~~~~~~~~~~~-~~~~~v~~~~~~~~--~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (375)
|++||.--++.+..+.. ...+.+..+...++ ...+++.++...+|+++|.+..+....++.... .....
T Consensus 806 iHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna--------~~Pna 877 (1034)
T KOG4190|consen 806 IHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNA--------PGPNA 877 (1034)
T ss_pred ceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccC--------CCCch
Confidence 99999887777654321 12233344443343 232344447889999999999888777764310 01235
Q ss_pred ceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCcceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEee
Q 017194 204 FVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLD 283 (375)
Q Consensus 204 ~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~ 283 (375)
.+.++++.| .|+.++++-.+|.|.+.|.++++.+.
T Consensus 878 ~~R~iaVa~------~GN~lAa~LSnGci~~LDaR~G~vIN--------------------------------------- 912 (1034)
T KOG4190|consen 878 LTRAIAVAD------KGNKLAAALSNGCIAILDARNGKVIN--------------------------------------- 912 (1034)
T ss_pred heeEEEecc------CcchhhHHhcCCcEEEEecCCCceec---------------------------------------
Confidence 678999988 79999999999999999999874332
Q ss_pred eeecCCCccEEEEEEeecCCCCcEEEEecCCCeEEE-EeCCCc
Q 017194 284 YSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKV-WDCSRF 325 (375)
Q Consensus 284 ~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~dg~i~i-wd~~~~ 325 (375)
..+........++- |..+.|+....|.++.+ |..-++
T Consensus 913 -swrpmecdllqlaa----psdq~L~~saldHslaVnWhaldg 950 (1034)
T KOG4190|consen 913 -SWRPMECDLLQLAA----PSDQALAQSALDHSLAVNWHALDG 950 (1034)
T ss_pred -cCCcccchhhhhcC----chhHHHHhhcccceeEeeehhcCC
Confidence 12221222233332 56678888888888888 877665
No 276
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=99.40 E-value=2.3e-11 Score=91.18 Aligned_cols=200 Identities=7% Similarity=-0.051 Sum_probs=123.0
Q ss_pred eeEEEEecCCCCEEEEeCCCCcEEEEecccCce------------eeEeeecCccEEEEEEeCCCCeEEEEcCCCeEEEE
Q 017194 18 ATCCIASRDRPGFVASSGEDGCICWFDLRSKDV------------QLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSF 85 (375)
Q Consensus 18 i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~------------~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i~iw 85 (375)
|+.+.++-+ ..|+++..++.+......++.+ .+.+..|.++-.+-+.+--++.++++..||.+.++
T Consensus 39 ~~~~~~v~~--~~lf~~e~~~~~ss~g~~r~~~~~~~~rt~~i~~~~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~ 116 (319)
T KOG4714|consen 39 LSKVSLSAE--YILFTGETSSQIISLGKGRGRCISLWERDDGIDPFKVLAKNSEIDPNDACTMTDNRVCIGYADGSLAVF 116 (319)
T ss_pred EEEeechhh--heeecccchhheeeeccceEEEechhhcccCcCceeeeeccCCCCCcccccccCCceEecCCCceEEEE
Confidence 556666644 4677777777666655443322 22233333322222223335678999999999999
Q ss_pred ECCCCCcccccccccCCCcceeEEEEcCCCCeEEEEe-----CCCcEEEEeCcCceeeeeEecCcccceeEEEEeeCCCc
Q 017194 86 DVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACAD-----DGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPW 160 (375)
Q Consensus 86 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-----~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 160 (375)
+.+.. .+.......-...-.+.++...++.+.++. .-+..+.|+++..+.+..-. .-...|.+++-+|..+.
T Consensus 117 s~~~~--~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~-~~~~~v~~l~~hp~qq~ 193 (319)
T KOG4714|consen 117 STDKD--LALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSK-KALDAVTALCSHPAQQH 193 (319)
T ss_pred echHH--HhhhhhcccccccccccceeecccEEecCCcceEeeccceeeecccccccccccc-cccccchhhhCCccccc
Confidence 98741 111111111011122223333454555442 12345666665433322222 12335999999998877
Q ss_pred EEEEeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCC
Q 017194 161 EVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIES 239 (375)
Q Consensus 161 ~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 239 (375)
++++|+.||.+.+||.+.......+... |+..+..+.|+|. ++..|+++++||.+..||..+
T Consensus 194 ~v~cgt~dg~~~l~d~rn~~~p~S~l~a------------hk~~i~eV~FHpk-----~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 194 LVCCGTDDGIVGLWDARNVAMPVSLLKA------------HKAEIWEVHFHPK-----NPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred EEEEecCCCeEEEEEcccccchHHHHHH------------hhhhhhheeccCC-----CchheeEecCCCcEEEEcCCC
Confidence 8899999999999999987544443333 6788999999997 889999999999999999986
No 277
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.39 E-value=1.8e-09 Score=92.39 Aligned_cols=266 Identities=15% Similarity=0.086 Sum_probs=158.7
Q ss_pred CCEEEEeCCCCcEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEEcCCCeEEEEECCCCCcccccccccCCCccee
Q 017194 28 PGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEIN 107 (375)
Q Consensus 28 ~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~ 107 (375)
+..++.++.+|.|..+|..+|+.+............... ++..++.++.++.+..+|..+++..-.... ...+.
T Consensus 65 ~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~----~~~~~ 138 (377)
T TIGR03300 65 GGKVYAADADGTVVALDAETGKRLWRVDLDERLSGGVGA--DGGLVFVGTEKGEVIALDAEDGKELWRAKL----SSEVL 138 (377)
T ss_pred CCEEEEECCCCeEEEEEccCCcEeeeecCCCCcccceEE--cCCEEEEEcCCCEEEEEECCCCcEeeeecc----Cceee
Confidence 457888888899999999999987766543322222222 466788888899999999988765433222 12222
Q ss_pred E-EEEcCCCCeEEEEeCCCcEEEEeCcCceeeeeEecCcccce-----eEEEEeeCCCcEEEEeecCCeEEEeeCCCCCc
Q 017194 108 Q-IVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSIC-----SSVQFIPWKPWEVISGGLDSKLVMWDFSKGRP 181 (375)
Q Consensus 108 ~-~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v-----~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~ 181 (375)
+ ... .+..++.++.++.+..+|.++++.+..+. ...... .+.... + . .++.+..++.+..+|.++|+.
T Consensus 139 ~~p~v--~~~~v~v~~~~g~l~a~d~~tG~~~W~~~-~~~~~~~~~~~~sp~~~-~-~-~v~~~~~~g~v~ald~~tG~~ 212 (377)
T TIGR03300 139 SPPLV--ANGLVVVRTNDGRLTALDAATGERLWTYS-RVTPALTLRGSASPVIA-D-G-GVLVGFAGGKLVALDLQTGQP 212 (377)
T ss_pred cCCEE--ECCEEEEECCCCeEEEEEcCCCceeeEEc-cCCCceeecCCCCCEEE-C-C-EEEEECCCCEEEEEEccCCCE
Confidence 1 111 34567778889999999999998877765 222111 111222 2 3 577888899999999999987
Q ss_pred ceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCcceeecccccCCCCCCceeecc
Q 017194 182 NKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSK 261 (375)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~ 261 (375)
+.......+..... ......+.-+|. -.+..+++++.+|.++.||..+++.....
T Consensus 213 ~W~~~~~~~~g~~~------~~~~~~~~~~p~----~~~~~vy~~~~~g~l~a~d~~tG~~~W~~--------------- 267 (377)
T TIGR03300 213 LWEQRVALPKGRTE------LERLVDVDGDPV----VDGGQVYAVSYQGRVAALDLRSGRVLWKR--------------- 267 (377)
T ss_pred eeeeccccCCCCCc------hhhhhccCCccE----EECCEEEEEEcCCEEEEEECCCCcEEEee---------------
Confidence 76654331110000 000001111110 02567888888999999999876422110
Q ss_pred cccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEecCCCeEEEEeCCCceeeeecchhhhhhhhc
Q 017194 262 VNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNI 341 (375)
Q Consensus 262 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 341 (375)
.... ...... ++..++.++.||.|..+|..+++... ...
T Consensus 268 -----------------------~~~~----~~~p~~-----~~~~vyv~~~~G~l~~~d~~tG~~~W---------~~~ 306 (377)
T TIGR03300 268 -----------------------DASS----YQGPAV-----DDNRLYVTDADGVVVALDRRSGSELW---------KND 306 (377)
T ss_pred -----------------------ccCC----ccCceE-----eCCEEEEECCCCeEEEEECCCCcEEE---------ccc
Confidence 1111 112222 34567777889999999999885331 110
Q ss_pred cccc-ceeeeeecCCCCCcEEEeeCCCeEEEEec
Q 017194 342 NLNK-KVNWLCTTPTESENLVVCDTSKVVKVYSI 374 (375)
Q Consensus 342 ~~~~-~v~~~~~~~~~~~~l~s~~~dg~v~iw~~ 374 (375)
.... ....... .+..|++++.||.|+++|.
T Consensus 307 ~~~~~~~ssp~i---~g~~l~~~~~~G~l~~~d~ 337 (377)
T TIGR03300 307 ELKYRQLTAPAV---VGGYLVVGDFEGYLHWLSR 337 (377)
T ss_pred cccCCccccCEE---ECCEEEEEeCCCEEEEEEC
Confidence 1011 1111111 3457888899999998875
No 278
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=99.38 E-value=4.5e-10 Score=84.82 Aligned_cols=264 Identities=11% Similarity=0.029 Sum_probs=159.9
Q ss_pred CCCcEEEEecccCc--eeeEeeecCccEEEEEEeC-----CCCeEEEEcCCCeEEEEECCCCCcccccccccCCCcceeE
Q 017194 36 EDGCICWFDLRSKD--VQLVTDVGNGPVTSLCFKS-----GNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQ 108 (375)
Q Consensus 36 ~d~~i~iw~~~~~~--~~~~~~~~~~~v~~l~~~~-----~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~ 108 (375)
....+-+|+..+.. .++.. ..+.|.| .-.+|+.|+..|.+.+|...+.+.. +.....|...|+-
T Consensus 50 ~t~sv~i~~~y~N~~~iv~~y-------~g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~h--~~~cd~snn~v~~ 120 (344)
T KOG4532|consen 50 KTISVPINSHYSNPKGIVEFY-------TGMTFTPGSFINKCVTLADGGASGQFDLFACNTNDGH--LYQCDVSNNDVTL 120 (344)
T ss_pred ceeeeEeccccCCchhhEEee-------ecccccchHhhccccEEEeccccceeeeecccCcccc--eeeecccccchhh
Confidence 44567777776544 22222 2344544 3457899999999999999864322 2222222333322
Q ss_pred EEEcCC-CCeEEEEeCCCcEEEEeCcCceeeeeEecCcccceeEEEEeeCCCcEEEEeecCCeEEEeeCCCC-CcceEEe
Q 017194 109 IVCNPK-SSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKG-RPNKIVN 186 (375)
Q Consensus 109 ~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~-~~~~~~~ 186 (375)
+.-..+ .-.+..++.|.++++.+++-+.....+. ...-.+.+++++++++ .+++.+....|..|.+... +.+..+.
T Consensus 121 ~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h-~~~~~~ns~~~snd~~-~~~~Vgds~~Vf~y~id~~sey~~~~~ 198 (344)
T KOG4532|consen 121 VKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVH-NQNLTQNSLHYSNDPS-WGSSVGDSRRVFRYAIDDESEYIENIY 198 (344)
T ss_pred hhhhcccccceeeccCCcceeEEEEecCcccceee-ccccceeeeEEcCCCc-eEEEecCCCcceEEEeCCccceeeeeE
Confidence 221112 2236677788889988887554433332 1123488999999998 6888888899999998753 2222222
Q ss_pred cCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCcceeecccccCCCCCCceeecccccce
Q 017194 187 FGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRD 266 (375)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~ 266 (375)
... ....-.+..|+. +...+|++.+||++.|||++....+.....
T Consensus 199 ~a~-----------t~D~gF~~S~s~------~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~s------------------ 243 (344)
T KOG4532|consen 199 EAP-----------TSDHGFYNSFSE------NDLQFAVVFQDGTCAIYDVRNMATPMAEIS------------------ 243 (344)
T ss_pred ecc-----------cCCCceeeeecc------CcceEEEEecCCcEEEEEecccccchhhhc------------------
Confidence 110 233445677777 788999999999999999997543322221
Q ss_pred eeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEecCCCeEEEEeCCCceeeeecchhhhhhhhcccc-c
Q 017194 267 AEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLN-K 345 (375)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~-~ 345 (375)
.+-..|.+.++.+.|++.++.. +|...-.-+.+.+-|+++....+.....+- ....|. .
T Consensus 244 -----------------strp~hnGa~R~c~Fsl~g~lD-LLf~sEhfs~~hv~D~R~~~~~q~I~i~~d--~~~~~~tq 303 (344)
T KOG4532|consen 244 -----------------STRPHHNGAFRVCRFSLYGLLD-LLFISEHFSRVHVVDTRNYVNHQVIVIPDD--VERKHNTQ 303 (344)
T ss_pred -----------------ccCCCCCCceEEEEecCCCcce-EEEEecCcceEEEEEcccCceeeEEecCcc--cccccccc
Confidence 1334589999999999544443 344444457899999999865432211111 122333 3
Q ss_pred ceeeeeecCCCCCcEEEeeCC
Q 017194 346 KVNWLCTTPTESENLVVCDTS 366 (375)
Q Consensus 346 ~v~~~~~~~~~~~~l~s~~~d 366 (375)
.|..-+|+. +++.+.+.+++
T Consensus 304 ~ifgt~f~~-~n~s~~v~~e~ 323 (344)
T KOG4532|consen 304 HIFGTNFNN-ENESNDVKNEL 323 (344)
T ss_pred ccccccccC-CCcccccccch
Confidence 477777876 55555555544
No 279
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=99.37 E-value=2.5e-09 Score=82.03 Aligned_cols=231 Identities=12% Similarity=0.147 Sum_probs=133.2
Q ss_pred EEEeCCCCeEEEEcCCCeEEEEECCCCC--cccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCceeeeeE
Q 017194 64 LCFKSGNEDIIYVSSGKEVKSFDVHMPA--SWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSL 141 (375)
Q Consensus 64 l~~~~~~~~l~~~~~d~~i~iwd~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 141 (375)
++.+.+|+.||..- |..|.|-..+++- ........+.....-..++|+||+..||.+...|+|+++|+.. ..+..+
T Consensus 3 ~~~~~~Gk~lAi~q-d~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g-~~lf~I 80 (282)
T PF15492_consen 3 LALSSDGKLLAILQ-DQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMG-SELFVI 80 (282)
T ss_pred eeecCCCcEEEEEe-ccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEeccc-ceeEEc
Confidence 56678888666544 7777776655321 1111112222234567899999999999999999999999864 444444
Q ss_pred ecC------cccceeEEEEeeCC-----CcEEEEeecCCeEEEeeCCC-----CCcceEEecCCCCCCCCCCcccCCCce
Q 017194 142 RAG------HSSICSSVQFIPWK-----PWEVISGGLDSKLVMWDFSK-----GRPNKIVNFGLPENNGNAGQCYNPAFV 205 (375)
Q Consensus 142 ~~~------~~~~v~~~~~~~~~-----~~~l~~~~~d~~i~~wd~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~v 205 (375)
... -...|..|.|.+.. .+.|++-..+|.++-|-+.. .+....+.+. ...+..|
T Consensus 81 ~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~----------~~yp~Gi 150 (282)
T PF15492_consen 81 PPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFS----------SHYPHGI 150 (282)
T ss_pred CcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEec----------ccCCCce
Confidence 311 23466777776543 23577777888888776532 2233344332 1135789
Q ss_pred eEEeecCCccccCCCCEEEEEecCC-----------cEEEEeCCCcceeecccccCCCCCCceeecccccceeeeeeeec
Q 017194 206 HAIAIPDADMLDKTNKICVVAKGDG-----------VVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQ 274 (375)
Q Consensus 206 ~~~~~~~~~~~~~~~~~l~~~~~dg-----------~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~ 274 (375)
.++.++| ..++|++|+... -+..|.+-++..-.+.......... ..+.. .+...
T Consensus 151 ~~~vy~p------~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~---~~~~~-----~~~~~- 215 (282)
T PF15492_consen 151 NSAVYHP------KHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDIT---ASSKR-----RGLLR- 215 (282)
T ss_pred eEEEEcC------CCCEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCcccc---ccccc-----cceee-
Confidence 9999999 578887776432 2344444332211111100000000 00000 00000
Q ss_pred CCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEecCCCeEEEEeCCCce
Q 017194 275 SGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQ 326 (375)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd~~~~~ 326 (375)
....+...........|..|..| |||+.||+...+|.|.+|++.+-.
T Consensus 216 --~~~~~~fs~~~~~~d~i~kmSlS---Pdg~~La~ih~sG~lsLW~iPsL~ 262 (282)
T PF15492_consen 216 --IPSFKFFSRQGQEQDGIFKMSLS---PDGSLLACIHFSGSLSLWEIPSLR 262 (282)
T ss_pred --ccceeeeeccccCCCceEEEEEC---CCCCEEEEEEcCCeEEEEecCcch
Confidence 00111111222346789999999 999999999999999999999873
No 280
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.37 E-value=6e-09 Score=97.17 Aligned_cols=323 Identities=16% Similarity=0.142 Sum_probs=192.5
Q ss_pred CceeEEEEecCCCCEEEEeC-CCC--cEEEEecccCc---eeeEee-----ecCccEEEEEEeCCCCeEEEEcCCCeEEE
Q 017194 16 ATATCCIASRDRPGFVASSG-EDG--CICWFDLRSKD---VQLVTD-----VGNGPVTSLCFKSGNEDIIYVSSGKEVKS 84 (375)
Q Consensus 16 ~~i~~~~~~~~~~~~l~s~~-~d~--~i~iw~~~~~~---~~~~~~-----~~~~~v~~l~~~~~~~~l~~~~~d~~i~i 84 (375)
..+...+|.+.....+++.+ ... .|.+-...... .+..+. .....|.++.+.++...++.+..+|.|.+
T Consensus 22 ~~~~~~~~d~~sd~i~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~~~~~~~~~~ivs~~yl~d~~~l~~~~~~Gdi~~ 101 (928)
T PF04762_consen 22 LPITATAFDSDSDSIYFVLGPNEIDYVIELDRFSQDGSVEVLASWDAPLPDDPNDKIVSFQYLADSESLCIALASGDIIL 101 (928)
T ss_pred cccceEEEecCCCeEEEEECCCCcceEEEEEeeccCCceeEEEeccccCCcCCCCcEEEEEeccCCCcEEEEECCceEEE
Confidence 35677778776444433333 322 34444433222 223332 23568999999999999999999999999
Q ss_pred E----ECCCCCcccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCceeeeeEecCcccceeEEEEeeCCCc
Q 017194 85 F----DVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPW 160 (375)
Q Consensus 85 w----d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 160 (375)
. +..+. ..+.+... ...|.+++||||+..|+..+.++++.+.+ ++..++.... -+... | |..
T Consensus 102 ~~~~~~~~~~-~~E~VG~v---d~GI~a~~WSPD~Ella~vT~~~~l~~mt-~~fd~i~E~~-l~~~~-----~---~~~ 167 (928)
T PF04762_consen 102 VREDPDPDED-EIEIVGSV---DSGILAASWSPDEELLALVTGEGNLLLMT-RDFDPISEVP-LDSDD-----F---GES 167 (928)
T ss_pred EEccCCCCCc-eeEEEEEE---cCcEEEEEECCCcCEEEEEeCCCEEEEEe-ccceEEEEee-cCccc-----c---CCC
Confidence 9 54432 23444444 67899999999999999999999998876 4555555544 22211 1 111
Q ss_pred EEEEeecCCeEEEeeCCCCCcceE-E-ecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEec---C---CcE
Q 017194 161 EVISGGLDSKLVMWDFSKGRPNKI-V-NFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKG---D---GVV 232 (375)
Q Consensus 161 ~l~~~~~d~~i~~wd~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~---d---g~i 232 (375)
..++.+...+=.-|.=..++.... . ....|.. + .........-..|+|.. ||.++|+.+. . ..+
T Consensus 168 ~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~-d-~~~~s~dd~~~~ISWRG------DG~yFAVss~~~~~~~~R~i 239 (928)
T PF04762_consen 168 KHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKV-D-EGKLSWDDGRVRISWRG------DGEYFAVSSVEPETGSRRVI 239 (928)
T ss_pred ceeeeccCcccCccCcchhhhhhhhccCCCCCcc-c-cCccccCCCceEEEECC------CCcEEEEEEEEcCCCceeEE
Confidence 244444333222222122222111 0 0000100 0 00110234567788987 8999999885 2 479
Q ss_pred EEEeCCCcceeecccccCCCCCCceeecccccceeeeeeeec---------CCcceeEeeeeecCCCccEEEEEEeecCC
Q 017194 233 DVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQ---------SGGKRLHLDYSVGGHTAAASCVAFSMFGE 303 (375)
Q Consensus 233 ~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 303 (375)
+||+-. +.... ...+.......++|.|.|+.++....... ...+..+....+......|..+.|+ +
T Consensus 240 RVy~Re-G~L~s-tSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfErNGLrhgeF~l~~~~~~~~v~~l~Wn---~ 314 (928)
T PF04762_consen 240 RVYSRE-GELQS-TSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFERNGLRHGEFTLRFDPEEEKVIELAWN---S 314 (928)
T ss_pred EEECCC-ceEEe-ccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEecCCcEeeeEecCCCCCCceeeEEEEC---C
Confidence 999987 33222 22244556778999999999997543111 1111222222233446789999999 9
Q ss_pred CCcEEEEecCCCeEEEEeCCCceeeeecchhhhhhhhc--ccccceeeeeecCCCCCcEEEeeCCCeEEEEec
Q 017194 304 RGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNI--NLNKKVNWLCTTPTESENLVVCDTSKVVKVYSI 374 (375)
Q Consensus 304 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~s~~~dg~v~iw~~ 374 (375)
|+..||..-.|. |.+|-..+..- .++... .....+..+.|+|.+...|.....+|.+..+++
T Consensus 315 ds~iLAv~~~~~-vqLWt~~NYHW--------YLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~ 378 (928)
T PF04762_consen 315 DSEILAVWLEDR-VQLWTRSNYHW--------YLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIYDF 378 (928)
T ss_pred CCCEEEEEecCC-ceEEEeeCCEE--------EEEEEEEccCCCCCCceEECCCCCCEEEEEecCCcEEEEEE
Confidence 999999977665 99999988742 222111 122334558999977777888887777766554
No 281
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=99.34 E-value=2.8e-11 Score=96.23 Aligned_cols=163 Identities=17% Similarity=0.195 Sum_probs=119.6
Q ss_pred cEEEEEEeCCCCeEEEEcCCCeEEEEECCCCCc-ccccccccCCCcceeEEEEcCCCCeEEEEeCCC---cEEEEeCcCc
Q 017194 60 PVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPAS-WRPLESYNYNKEEINQIVCNPKSSFLACADDGG---DVKIIDIRQH 135 (375)
Q Consensus 60 ~v~~l~~~~~~~~l~~~~~d~~i~iwd~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg---~i~iwd~~~~ 135 (375)
....+..++.+++++.+..+....++++..... .+.+..... ...-+.+.|..+...+..+..-| .+.+|....+
T Consensus 64 a~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v-~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~ 142 (390)
T KOG3914|consen 64 APALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCV-PKRPTAISFIREDTSVLVADKAGDVYSFDILSADSG 142 (390)
T ss_pred cccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeec-ccCcceeeeeeccceEEEEeecCCceeeeeeccccc
Confidence 344556678888898888888887888765433 233332222 23344555555555555554444 4555555444
Q ss_pred eeeeeEecCcccceeEEEEeeCCCcEEEEeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCcc
Q 017194 136 CLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADM 215 (375)
Q Consensus 136 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 215 (375)
.... +- +|-+.++.++++||++ +++++..|..|++-.......+..+-++ |...|..+++.+
T Consensus 143 ~~~~-~l-GhvSml~dVavS~D~~-~IitaDRDEkIRvs~ypa~f~IesfclG------------H~eFVS~isl~~--- 204 (390)
T KOG3914|consen 143 RCEP-IL-GHVSMLLDVAVSPDDQ-FIITADRDEKIRVSRYPATFVIESFCLG------------HKEFVSTISLTD--- 204 (390)
T ss_pred Ccch-hh-hhhhhhheeeecCCCC-EEEEecCCceEEEEecCcccchhhhccc------------cHhheeeeeecc---
Confidence 4433 33 7999999999999998 8999999999999998887788888877 889999999986
Q ss_pred ccCCCCEEEEEecCCcEEEEeCCCcceeec
Q 017194 216 LDKTNKICVVAKGDGVVDVINIESELNISR 245 (375)
Q Consensus 216 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~ 245 (375)
+..|++|+.|++|++||+.+++.+..
T Consensus 205 ----~~~LlS~sGD~tlr~Wd~~sgk~L~t 230 (390)
T KOG3914|consen 205 ----NYLLLSGSGDKTLRLWDITSGKLLDT 230 (390)
T ss_pred ----CceeeecCCCCcEEEEecccCCcccc
Confidence 77899999999999999999877643
No 282
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=99.34 E-value=4.9e-11 Score=94.91 Aligned_cols=161 Identities=16% Similarity=0.244 Sum_probs=115.5
Q ss_pred EEEEecCCCCEEEEeCCCCcEEEEecccCce----eeEeeecCccEEEEEEeCCCCeEEEEcCC---CeEEEEECCCCCc
Q 017194 20 CCIASRDRPGFVASSGEDGCICWFDLRSKDV----QLVTDVGNGPVTSLCFKSGNEDIIYVSSG---KEVKSFDVHMPAS 92 (375)
Q Consensus 20 ~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~----~~~~~~~~~~v~~l~~~~~~~~l~~~~~d---~~i~iwd~~~~~~ 92 (375)
.+..++. +++||.+..+....++++..... ...... ...-+++.|..+......+-.- ..+.+|....
T Consensus 67 ~~~~s~~-~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v-~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~--- 141 (390)
T KOG3914|consen 67 LVLTSDS-GRLVAVATSSKQRAVFDYRENPKGAKLLDVSCV-PKRPTAISFIREDTSVLVADKAGDVYSFDILSADS--- 141 (390)
T ss_pred ccccCCC-ceEEEEEeCCCceEEEEEecCCCcceeeeEeec-ccCcceeeeeeccceEEEEeecCCceeeeeecccc---
Confidence 3445665 88999988888777777654432 222221 2333455555444444444333 4555665543
Q ss_pred ccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCceeeeeEecCcccceeEEEEeeCCCcEEEEeecCCeEE
Q 017194 93 WRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLV 172 (375)
Q Consensus 93 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~ 172 (375)
......-+|-..++.++++||+++|+++..|..|++-....-..+..|-.||+..|..++.-++. .|++++.|++++
T Consensus 142 -~~~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~~--~LlS~sGD~tlr 218 (390)
T KOG3914|consen 142 -GRCEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDNY--LLLSGSGDKTLR 218 (390)
T ss_pred -cCcchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccCc--eeeecCCCCcEE
Confidence 23334456789999999999999999999999999988776666666655899999999998875 699999999999
Q ss_pred EeeCCCCCcceEEecC
Q 017194 173 MWDFSKGRPNKIVNFG 188 (375)
Q Consensus 173 ~wd~~~~~~~~~~~~~ 188 (375)
+||+++++.+..+.+.
T Consensus 219 ~Wd~~sgk~L~t~dl~ 234 (390)
T KOG3914|consen 219 LWDITSGKLLDTCDLS 234 (390)
T ss_pred EEecccCCcccccchh
Confidence 9999999998777654
No 283
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.34 E-value=6.1e-09 Score=98.91 Aligned_cols=280 Identities=12% Similarity=0.074 Sum_probs=158.9
Q ss_pred EEEEEeCC-CCeEEEEcCCCeEEEEECCCCCccccccccc-----------CCCcceeEEEEcCCCCeEEEEe-CCCcEE
Q 017194 62 TSLCFKSG-NEDIIYVSSGKEVKSFDVHMPASWRPLESYN-----------YNKEEINQIVCNPKSSFLACAD-DGGDVK 128 (375)
Q Consensus 62 ~~l~~~~~-~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~-----------~~~~~v~~~~~~~~~~~l~~~~-~dg~i~ 128 (375)
..+++++. ++.+++-+..+.|+++|... .....+.... ..-.....+++.++++.|+++. .++.|+
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G-~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir 649 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLDG-NFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALR 649 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCCC-CEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEE
Confidence 35778764 55666666778999999863 2221111100 0112357889999888766655 456799
Q ss_pred EEeCcCceeeeeEecCc-----------------ccceeEEEEeeCCCcEEEEeecCCeEEEeeCCCCCcceEEec-CC-
Q 017194 129 IIDIRQHCLYKSLRAGH-----------------SSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNF-GL- 189 (375)
Q Consensus 129 iwd~~~~~~~~~~~~~~-----------------~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~-~~- 189 (375)
++|+.++.. .++. +- -.....++++|++..++++.+.++.|++||..++... .+.. +.
T Consensus 650 ~id~~~~~V-~tla-g~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~-~~~G~G~~ 726 (1057)
T PLN02919 650 EIDFVNETV-RTLA-GNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTR-VFSGDGYE 726 (1057)
T ss_pred EEecCCCEE-EEEe-ccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEE-EEecCCcc
Confidence 999876543 3332 10 1134689999955547788888999999998876432 2210 00
Q ss_pred CCCCCCCCcccCCCceeEEeecCCccccCCCC-EEEEEecCCcEEEEeCCCcceeecccccCCCCCCceeec-cccccee
Q 017194 190 PENNGNAGQCYNPAFVHAIAIPDADMLDKTNK-ICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTS-KVNIRDA 267 (375)
Q Consensus 190 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s-~~g~~~~ 267 (375)
............-.....|+++| +++ ++++-+.++.|++||+.++..................+. .+|
T Consensus 727 ~~~~g~~~~~~~~~~P~GIavsp------dG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG---- 796 (1057)
T PLN02919 727 RNLNGSSGTSTSFAQPSGISLSP------DLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDG---- 796 (1057)
T ss_pred ccCCCCccccccccCccEEEEeC------CCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCC----
Confidence 00000000000113457789988 677 445555678999999986532111000000000000000 000
Q ss_pred eeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEecCCCeEEEEeCCCceeeeecchhhhh----hhhccc
Q 017194 268 EMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLL----IKNINL 343 (375)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~----~~~~~~ 343 (375)
.. ....-.....++++ ++|.++++-..++.|++||..++........+..- ....+.
T Consensus 797 ------------~g----~~~~l~~P~Gvavd---~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~ 857 (1057)
T PLN02919 797 ------------VG----SEVLLQHPLGVLCA---KDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQ 857 (1057)
T ss_pred ------------ch----hhhhccCCceeeEe---CCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccc
Confidence 00 00011223578899 89999999999999999999886432111000000 001122
Q ss_pred ccceeeeeecCCCCCcEEEeeCCCeEEEEecC
Q 017194 344 NKKVNWLCTTPTESENLVVCDTSKVVKVYSIS 375 (375)
Q Consensus 344 ~~~v~~~~~~~~~~~~l~s~~~dg~v~iw~~~ 375 (375)
-.....+++++ +|+.+++-+.+++|++|+++
T Consensus 858 l~~P~GIavd~-dG~lyVaDt~Nn~Irvid~~ 888 (1057)
T PLN02919 858 LSEPAGLALGE-NGRLFVADTNNSLIRYLDLN 888 (1057)
T ss_pred cCCceEEEEeC-CCCEEEEECCCCEEEEEECC
Confidence 23577889998 89888888899999999974
No 284
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.34 E-value=1.1e-11 Score=105.98 Aligned_cols=259 Identities=17% Similarity=0.177 Sum_probs=170.0
Q ss_pred eeEEEEecCC-CCEEEEeCCCCcEEEEecccC---ceeeEeeecCccEEEEEEeCCCC-eEEEEcCCCeEEEEECCCCCc
Q 017194 18 ATCCIASRDR-PGFVASSGEDGCICWFDLRSK---DVQLVTDVGNGPVTSLCFKSGNE-DIIYVSSGKEVKSFDVHMPAS 92 (375)
Q Consensus 18 i~~~~~~~~~-~~~l~s~~~d~~i~iw~~~~~---~~~~~~~~~~~~v~~l~~~~~~~-~l~~~~~d~~i~iwd~~~~~~ 92 (375)
|-.+.|+|.. ..+-++......-.+|++... .....+.+|...|+.+.|+|+.. .+++++.|..+..||+++..
T Consensus 70 vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~- 148 (1081)
T KOG0309|consen 70 VADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPH- 148 (1081)
T ss_pred hcceecccCCCCceeEEecCcchhhhhhhhcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCC-
Confidence 5567787652 123333444456778987543 33556778999999999998654 67888999999999998753
Q ss_pred ccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCc-eeeeeEecCcccceeEEEEeeCCCcEEEEeecCCeE
Q 017194 93 WRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQH-CLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKL 171 (375)
Q Consensus 93 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i 171 (375)
.++.....-...-..+.|+.....+++.+....|.+||.+.+ .++..++ +|...|+.++|...-...+.+++.|++|
T Consensus 149 -~p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i~vwd~r~gs~pl~s~K-~~vs~vn~~~fnr~~~s~~~s~~~d~tv 226 (1081)
T KOG0309|consen 149 -RPFYSTSSWRSAASQVKWNYKDPNVLASSHGNDIFVWDLRKGSTPLCSLK-GHVSSVNSIDFNRFKYSEIMSSSNDGTV 226 (1081)
T ss_pred -cceeeeecccccCceeeecccCcchhhhccCCceEEEeccCCCcceEEec-ccceeeehHHHhhhhhhhhcccCCCCce
Confidence 334443333556778999986666666667788999999865 5678888 8999999999987554479999999999
Q ss_pred EEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCcceeecccccCC
Q 017194 172 VMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTK 251 (375)
Q Consensus 172 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~ 251 (375)
++||............. ...++..-.+.|. .+|..+.-.-.+..+.+++-+........
T Consensus 227 kfw~y~kSt~e~~~~vt------------t~~piw~~r~~Pf----g~g~~~mp~~G~n~v~~~~c~n~d~e~n~----- 285 (1081)
T KOG0309|consen 227 KFWDYSKSTTESKRTVT------------TNFPIWRGRYLPF----GEGYCIMPMVGGNMVPQLRCENSDLEWNV----- 285 (1081)
T ss_pred eeecccccccccceecc------------ccCcceecccccc----CceeEeccccCCeeeeeccccchhhhhcc-----
Confidence 99998754332222211 2345555555552 12333332223334555554432111100
Q ss_pred CCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecC-------CCCcEEEEecCCCeEEEEeCCC
Q 017194 252 PLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFG-------ERGKYLISGGNDKLVKVWDCSR 324 (375)
Q Consensus 252 ~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-------~~~~~l~s~~~dg~i~iwd~~~ 324 (375)
....+.++++.||...|....|-.-. ...-.|+|=+.|..+++|-+.+
T Consensus 286 -------------------------~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~ 340 (1081)
T KOG0309|consen 286 -------------------------FDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPIDS 340 (1081)
T ss_pred -------------------------ccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecCCceEeeeccH
Confidence 11235678899999888776664110 1123699999999999999876
Q ss_pred c
Q 017194 325 F 325 (375)
Q Consensus 325 ~ 325 (375)
.
T Consensus 341 ~ 341 (1081)
T KOG0309|consen 341 Q 341 (1081)
T ss_pred H
Confidence 4
No 285
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.33 E-value=2.1e-10 Score=98.25 Aligned_cols=194 Identities=12% Similarity=0.140 Sum_probs=143.1
Q ss_pred eeeecCCCceeEEEEecCCCCEEEEeCCCCcEEEEecccCceeeEe--eecCccEEEEEEeCCCCeEEEEcCCCeEEEEE
Q 017194 9 RRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVT--DVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFD 86 (375)
Q Consensus 9 ~~l~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~--~~~~~~v~~l~~~~~~~~l~~~~~d~~i~iwd 86 (375)
++|.||.+.|.-+.|+.. .+.|-|+..+|.|.+|-+-+|.-...+ ....+.|.+++|+.+|..+...-.||.|.+=.
T Consensus 65 QtLeGH~~sV~vvTWNe~-~QKLTtSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGs 143 (1189)
T KOG2041|consen 65 QTLEGHNASVMVVTWNEN-NQKLTTSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGS 143 (1189)
T ss_pred hhhccCcceEEEEEeccc-cccccccCCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEe
Confidence 578999999999999988 788999999999999999887654333 22467789999999999999999999998888
Q ss_pred CCCCCcccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCce-------eee----eEecCcccceeEEEEe
Q 017194 87 VHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHC-------LYK----SLRAGHSSICSSVQFI 155 (375)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-------~~~----~~~~~~~~~v~~~~~~ 155 (375)
++..+.+.. .++ ......+.|++|.+.++.+-.+|.+.++|....- +.- .+. .....+-.+.|.
T Consensus 144 vdGNRIwgK--eLk--g~~l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s-~~~~kia~i~w~ 218 (1189)
T KOG2041|consen 144 VDGNRIWGK--ELK--GQLLAHVLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFS-NFPTKIAEIEWN 218 (1189)
T ss_pred eccceecch--hcc--hheccceeecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeec-CCCccccceeec
Confidence 775433221 111 2345578999999999888899999999975321 100 111 112235556653
Q ss_pred --------eCCCcEEEEeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEe
Q 017194 156 --------PWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAK 227 (375)
Q Consensus 156 --------~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~ 227 (375)
|+.+ .|+.+..+|.+.+..-.+......+..+ -.+....|++ +|..|++++
T Consensus 219 ~g~~~~v~pdrP-~lavcy~nGr~QiMR~eND~~Pvv~dtg--------------m~~vgakWnh------~G~vLAvcG 277 (1189)
T KOG2041|consen 219 TGPYQPVPPDRP-RLAVCYANGRMQIMRSENDPEPVVVDTG--------------MKIVGAKWNH------NGAVLAVCG 277 (1189)
T ss_pred cCccccCCCCCC-EEEEEEcCceehhhhhcCCCCCeEEecc--------------cEeecceecC------CCcEEEEcc
Confidence 4666 7999999999998776655555555533 5788899999 899999988
Q ss_pred cC
Q 017194 228 GD 229 (375)
Q Consensus 228 ~d 229 (375)
.+
T Consensus 278 ~~ 279 (1189)
T KOG2041|consen 278 ND 279 (1189)
T ss_pred Cc
Confidence 65
No 286
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.33 E-value=1.5e-09 Score=90.34 Aligned_cols=235 Identities=15% Similarity=0.196 Sum_probs=153.5
Q ss_pred eEEEEecCCCCEEEEeCCCCcEEEEecccCceeeEeeecCccEEEEEEeCCCC--eEEE-----EcCCCeEEEEECCCCC
Q 017194 19 TCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNE--DIIY-----VSSGKEVKSFDVHMPA 91 (375)
Q Consensus 19 ~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~--~l~~-----~~~d~~i~iwd~~~~~ 91 (375)
++..|++| .. |+.--..+.+.+|+....+. ..-..|...|+.+.++|.+. .+++ .+.-..++||......
T Consensus 129 W~~qfs~d-Es-l~arlv~nev~f~~~~~f~~-~~~kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~ 205 (566)
T KOG2315|consen 129 WVPQFSID-ES-LAARLVSNEVQFYDLGSFKT-IQHKLSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEG 205 (566)
T ss_pred cccccccc-hh-hhhhhhcceEEEEecCCccc-eeeeeeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEecccccc
Confidence 57889888 33 33333345799999876432 22234678899999998633 3333 2334689999876332
Q ss_pred cccccccccCCCcceeEEEEcCCCCeEE---EEeCC---------CcEEEEeCcCceeeeeEecCcccceeEEEEeeCCC
Q 017194 92 SWRPLESYNYNKEEINQIVCNPKSSFLA---CADDG---------GDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKP 159 (375)
Q Consensus 92 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~---~~~~d---------g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 159 (375)
....+..-..-...=..+.|++-|.-|+ +..-| .++++.++......-.+. -.++|.++.|+|++.
T Consensus 206 ~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~--k~GPVhdv~W~~s~~ 283 (566)
T KOG2315|consen 206 QHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLL--KEGPVHDVTWSPSGR 283 (566)
T ss_pred ccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecC--CCCCceEEEECCCCC
Confidence 2222222111123344577887665432 22223 368888887445544444 578999999999997
Q ss_pred cE-EEEeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEec---CCcEEEE
Q 017194 160 WE-VISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKG---DGVVDVI 235 (375)
Q Consensus 160 ~~-l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~---dg~i~i~ 235 (375)
.+ ++-|..-.++.+||++ +.++..+. +++-+.+-|+| .|++++.++- -|.+-+|
T Consensus 284 EF~VvyGfMPAkvtifnlr-~~~v~df~---------------egpRN~~~fnp------~g~ii~lAGFGNL~G~mEvw 341 (566)
T KOG2315|consen 284 EFAVVYGFMPAKVTIFNLR-GKPVFDFP---------------EGPRNTAFFNP------HGNIILLAGFGNLPGDMEVW 341 (566)
T ss_pred EEEEEEecccceEEEEcCC-CCEeEeCC---------------CCCccceEECC------CCCEEEEeecCCCCCceEEE
Confidence 32 2335567789999987 55665553 45678899999 7999988875 4799999
Q ss_pred eCCCcceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEecC--
Q 017194 236 NIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGN-- 313 (375)
Q Consensus 236 d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~-- 313 (375)
|..+.+. +..+.. ..-+-+.|+ |||++++|+..
T Consensus 342 Dv~n~K~----------------------------------------i~~~~a--~~tt~~eW~---PdGe~flTATTaP 376 (566)
T KOG2315|consen 342 DVPNRKL----------------------------------------IAKFKA--ANTTVFEWS---PDGEYFLTATTAP 376 (566)
T ss_pred eccchhh----------------------------------------cccccc--CCceEEEEc---CCCcEEEEEeccc
Confidence 9997432 223332 223456899 99999998874
Q ss_pred ----CCeEEEEeCCCc
Q 017194 314 ----DKLVKVWDCSRF 325 (375)
Q Consensus 314 ----dg~i~iwd~~~~ 325 (375)
|+.++||++...
T Consensus 377 RlrvdNg~KiwhytG~ 392 (566)
T KOG2315|consen 377 RLRVDNGIKIWHYTGS 392 (566)
T ss_pred cEEecCCeEEEEecCc
Confidence 788999998775
No 287
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.32 E-value=8.3e-11 Score=90.67 Aligned_cols=266 Identities=14% Similarity=0.171 Sum_probs=162.8
Q ss_pred CccEEEEEEeCCCCeEEEEcCCCeEEEEECCCCC--cccccccccCCC------------cceeEEEEcCCC--CeEEEE
Q 017194 58 NGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPA--SWRPLESYNYNK------------EEINQIVCNPKS--SFLACA 121 (375)
Q Consensus 58 ~~~v~~l~~~~~~~~l~~~~~d~~i~iwd~~~~~--~~~~~~~~~~~~------------~~v~~~~~~~~~--~~l~~~ 121 (375)
...|+++.|...|.+|++|...|.|.++.-+... ..+.+..++.|. ..|..+.|..++ ..++..
T Consensus 26 ad~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLls 105 (460)
T COG5170 26 ADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLS 105 (460)
T ss_pred cceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEe
Confidence 5679999999999999999999999999866432 233344444443 357778887654 346666
Q ss_pred eCCCcEEEEeCcCcee------------------------------------------eeeEecCcccceeEEEEeeCCC
Q 017194 122 DDGGDVKIIDIRQHCL------------------------------------------YKSLRAGHSSICSSVQFIPWKP 159 (375)
Q Consensus 122 ~~dg~i~iwd~~~~~~------------------------------------------~~~~~~~~~~~v~~~~~~~~~~ 159 (375)
+.|.+|++|.+..... .+.+...|..-++++.|..+..
T Consensus 106 tNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~e 185 (460)
T COG5170 106 TNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDKE 185 (460)
T ss_pred cCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCchh
Confidence 6899999998753210 0011125666788999998876
Q ss_pred cEEEEeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCC
Q 017194 160 WEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIES 239 (375)
Q Consensus 160 ~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 239 (375)
.+++ ..|=.|.+|++.-......+..-.|..... -...|++..|+|. ....+...+..|.|++-|++.
T Consensus 186 -t~lS-aDdLrINLWnl~i~D~sFnIVDiKP~nmee-----LteVItSaeFhp~-----~cn~fmYSsSkG~Ikl~DlRq 253 (460)
T COG5170 186 -TLLS-ADDLRINLWNLEIIDGSFNIVDIKPHNMEE-----LTEVITSAEFHPE-----MCNVFMYSSSKGEIKLNDLRQ 253 (460)
T ss_pred -eeee-ccceeeeeccccccCCceEEEeccCccHHH-----HHHHHhhcccCHh-----HcceEEEecCCCcEEehhhhh
Confidence 4554 457789999987543333322111110000 1235788889886 667888888999999999994
Q ss_pred cceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEecCCCeEEE
Q 017194 240 ELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKV 319 (375)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~dg~i~i 319 (375)
...-...... ....-|| .-..-+.+-...|..+.|+ ++|+|+++-+. -+|+|
T Consensus 254 ~alcdn~~kl-------fe~~~D~-----------------v~~~ff~eivsSISD~kFs---~ngryIlsRdy-ltvki 305 (460)
T COG5170 254 SALCDNSKKL-------FELTIDG-----------------VDVDFFEEIVSSISDFKFS---DNGRYILSRDY-LTVKI 305 (460)
T ss_pred hhhccCchhh-------hhhccCc-----------------ccchhHHHHhhhhcceEEc---CCCcEEEEecc-ceEEE
Confidence 3211100000 0000000 0000122234578889999 99999998877 68999
Q ss_pred EeCCCceeeeecchhhhhhhhccc------------ccce---eeeeecCCCCCcEEEeeCCCeEEEE
Q 017194 320 WDCSRFQGVQTSINNDLLIKNINL------------NKKV---NWLCTTPTESENLVVCDTSKVVKVY 372 (375)
Q Consensus 320 wd~~~~~~~~~~~~~~~~~~~~~~------------~~~v---~~~~~~~~~~~~l~s~~~dg~v~iw 372 (375)
||++..+. ++.+..-| ...| ..+.|+. |.+.+.+|+......++
T Consensus 306 wDvnm~k~--------pikTi~~h~~l~~~l~d~YEnDaifdkFeisfSg-d~~~v~sgsy~NNfgiy 364 (460)
T COG5170 306 WDVNMAKN--------PIKTIPMHCDLMDELNDVYENDAIFDKFEISFSG-DDKHVLSGSYSNNFGIY 364 (460)
T ss_pred EecccccC--------CceeechHHHHHHHHHhhhhccceeeeEEEEecC-Ccccccccccccceeee
Confidence 99987652 22222222 1222 3356666 66778888776655554
No 288
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.31 E-value=1.9e-10 Score=88.71 Aligned_cols=215 Identities=11% Similarity=0.091 Sum_probs=142.7
Q ss_pred CCceeEEEEecCCCCEEEEeCCCCcEEEEecccCc-----eeeEeeec------------CccEEEEEEeCCC--CeEEE
Q 017194 15 KATATCCIASRDRPGFVASSGEDGCICWFDLRSKD-----VQLVTDVG------------NGPVTSLCFKSGN--EDIIY 75 (375)
Q Consensus 15 ~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~-----~~~~~~~~------------~~~v~~l~~~~~~--~~l~~ 75 (375)
.+.|+++.|... |.+|++|...|.|.++.-+... ....++.| ...|..+.|..++ ..++.
T Consensus 26 ad~ItaVefd~t-g~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLl 104 (460)
T COG5170 26 ADKITAVEFDET-GLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLL 104 (460)
T ss_pred cceeeEEEeccc-cceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEE
Confidence 467999999998 8999999999999999865432 12334444 3568889887544 35677
Q ss_pred EcCCCeEEEEECCCCCc-------------------cccc--------------------ccc-cCCCcceeEEEEcCCC
Q 017194 76 VSSGKEVKSFDVHMPAS-------------------WRPL--------------------ESY-NYNKEEINQIVCNPKS 115 (375)
Q Consensus 76 ~~~d~~i~iwd~~~~~~-------------------~~~~--------------------~~~-~~~~~~v~~~~~~~~~ 115 (375)
.+.|.+|++|.+..... +... +.+ ..|...|.++.|+.|.
T Consensus 105 stNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~ 184 (460)
T COG5170 105 STNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDK 184 (460)
T ss_pred ecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCch
Confidence 78899999998764210 0000 001 2466778899999998
Q ss_pred CeEEEEeCCCcEEEEeCcCce---eeeeEecCcc-----cceeEEEEeeCCCcEEEEeecCCeEEEeeCCCCCc------
Q 017194 116 SFLACADDGGDVKIIDIRQHC---LYKSLRAGHS-----SICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRP------ 181 (375)
Q Consensus 116 ~~l~~~~~dg~i~iwd~~~~~---~~~~~~~~~~-----~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~------ 181 (375)
..++++ .|-.|.+|+++-.. .+-.++ .|. .-|++..|+|....++.-.+..|.|++-|++....
T Consensus 185 et~lSa-DdLrINLWnl~i~D~sFnIVDiK-P~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~k 262 (460)
T COG5170 185 ETLLSA-DDLRINLWNLEIIDGSFNIVDIK-PHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKK 262 (460)
T ss_pred heeeec-cceeeeeccccccCCceEEEecc-CccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchh
Confidence 888877 56789999986321 222333 332 35788899998876788888999999999985321
Q ss_pred ceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCcce
Q 017194 182 NKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELN 242 (375)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~ 242 (375)
+...... .........-...|..+.|++ +|+++++-+. -++++||.+..+.
T Consensus 263 lfe~~~D---~v~~~ff~eivsSISD~kFs~------ngryIlsRdy-ltvkiwDvnm~k~ 313 (460)
T COG5170 263 LFELTID---GVDVDFFEEIVSSISDFKFSD------NGRYILSRDY-LTVKIWDVNMAKN 313 (460)
T ss_pred hhhhccC---cccchhHHHHhhhhcceEEcC------CCcEEEEecc-ceEEEEecccccC
Confidence 1111111 000000000124577888998 7888887765 4899999987543
No 289
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.31 E-value=3.2e-09 Score=88.41 Aligned_cols=276 Identities=12% Similarity=0.129 Sum_probs=177.0
Q ss_pred ceeEEEEecCCCCEEEEeCC-----------CCcEEEEecccCceeeEeee--cCccEE-EEEEeCCCCeEEEEcCCCeE
Q 017194 17 TATCCIASRDRPGFVASSGE-----------DGCICWFDLRSKDVQLVTDV--GNGPVT-SLCFKSGNEDIIYVSSGKEV 82 (375)
Q Consensus 17 ~i~~~~~~~~~~~~l~s~~~-----------d~~i~iw~~~~~~~~~~~~~--~~~~v~-~l~~~~~~~~l~~~~~d~~i 82 (375)
.|.-+.|||. .++|+|-+. ...++|||+.+|...+.+.. ....+. -..||.|++++|--.. ..|
T Consensus 251 ~Vq~idfSP~-EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~-~si 328 (698)
T KOG2314|consen 251 GVQFIDFSPN-EKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTG-NSI 328 (698)
T ss_pred CceeeecCCc-cceEEEecCCccccCcccCCCceEEEEEccccchhcceeccCCCccccceEEeccCCceeEEecc-ceE
Confidence 4777899999 899998753 25799999999998888765 233333 3589999999887664 678
Q ss_pred EEEECCCCCcccccccccCCCcceeEEEEcCCCCeEEEEeC-----CCcEEEEeCcCceeeeeEecCcccceeEEEEeeC
Q 017194 83 KSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADD-----GGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPW 157 (375)
Q Consensus 83 ~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-----dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~ 157 (375)
.||+... ...+..-.-....|....|+|.++.||.-.. -..+.+..+.+++.+++-. -++-.=..+.|-.+
T Consensus 329 sIyEtps---f~lld~Kslki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt~n-lfnVsDckLhWQk~ 404 (698)
T KOG2314|consen 329 SIYETPS---FMLLDKKSLKISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRTKN-LFNVSDCKLHWQKS 404 (698)
T ss_pred EEEecCc---eeeecccccCCccccCcccCCCcceEEEEcccccCCcceEEEEecCccceeeecc-ceeeeccEEEeccC
Confidence 9999764 2222222222567999999999988886542 2346777777777766655 44433344667777
Q ss_pred CCcEEEEe----------ecCCeEEEeeCCCCC-cceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEE
Q 017194 158 KPWEVISG----------GLDSKLVMWDFSKGR-PNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVA 226 (375)
Q Consensus 158 ~~~~l~~~----------~~d~~i~~wd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~ 226 (375)
|.+ |+.- +.-..+.|+.++... ++..+.+ ...+...+|-| .|..+++-
T Consensus 405 gdy-LcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~vel--------------ke~vi~FaWEP------~gdkF~vi 463 (698)
T KOG2314|consen 405 GDY-LCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVEL--------------KESVIAFAWEP------HGDKFAVI 463 (698)
T ss_pred CcE-EEEEEEeeccccccceEeeEEEEEeeccCCCceeeec--------------chheeeeeecc------CCCeEEEE
Confidence 773 4331 112245566666443 3344443 36788899988 68777765
Q ss_pred ec---CCcEEEEeCCC-cceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEee--------e-eecCCCccE
Q 017194 227 KG---DGVVDVINIES-ELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLD--------Y-SVGGHTAAA 293 (375)
Q Consensus 227 ~~---dg~i~i~d~~~-~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~--------~-~~~~~~~~v 293 (375)
+. ..++.+|.+.+ .................+.++|.|++++..+..... ..+... . ....| ...
T Consensus 464 ~g~~~k~tvsfY~~e~~~~~~~lVk~~dk~~~N~vfwsPkG~fvvva~l~s~~--g~l~F~D~~~a~~k~~~~~eh-~~a 540 (698)
T KOG2314|consen 464 SGNTVKNTVSFYAVETNIKKPSLVKELDKKFANTVFWSPKGRFVVVAALVSRR--GDLEFYDTDYADLKDTASPEH-FAA 540 (698)
T ss_pred EccccccceeEEEeecCCCchhhhhhhcccccceEEEcCCCcEEEEEEecccc--cceEEEecchhhhhhccCccc-ccc
Confidence 53 35788998884 333333334444667788999999998864322110 011110 0 11122 245
Q ss_pred EEEEEeecCCCCcEEEEecC------CCeEEEEeCCCc
Q 017194 294 SCVAFSMFGERGKYLISGGN------DKLVKVWDCSRF 325 (375)
Q Consensus 294 ~~~~~s~~~~~~~~l~s~~~------dg~i~iwd~~~~ 325 (375)
+.+.|. |.|+|+++++. |.--+||+.+..
T Consensus 541 t~veWD---PtGRYvvT~ss~wrhk~d~GYri~tfqGr 575 (698)
T KOG2314|consen 541 TEVEWD---PTGRYVVTSSSSWRHKVDNGYRIFTFQGR 575 (698)
T ss_pred ccceEC---CCCCEEEEeeehhhhccccceEEEEeecH
Confidence 678899 99999999875 556788887764
No 290
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.28 E-value=9.9e-09 Score=84.03 Aligned_cols=142 Identities=16% Similarity=0.184 Sum_probs=111.8
Q ss_pred cCCCceeEEEEecCCCCEEEEeCCCC-cEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEEcCCCeEEEEECCCCC
Q 017194 13 GHKATATCCIASRDRPGFVASSGEDG-CICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPA 91 (375)
Q Consensus 13 ~h~~~i~~~~~~~~~~~~l~s~~~d~-~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i~iwd~~~~~ 91 (375)
+|.+.|.=..+.-+ ++-++.|..|| .+-|+|..+++ .+.+...-+.|.++..+++|++++.+.....|.+.|+++++
T Consensus 357 ~~~~~VrY~r~~~~-~e~~vigt~dgD~l~iyd~~~~e-~kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididngn 434 (668)
T COG4946 357 GKKGGVRYRRIQVD-PEGDVIGTNDGDKLGIYDKDGGE-VKRIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGN 434 (668)
T ss_pred CCCCceEEEEEccC-CcceEEeccCCceEEEEecCCce-EEEeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCC
Confidence 57778888888877 66888999998 89999998776 45566667899999999999999999888899999999876
Q ss_pred cccccccccCCCcceeEEEEcCCCCeEEEEeCCC----cEEEEeCcCceeeeeEecCcccceeEEEEeeCCCcE
Q 017194 92 SWRPLESYNYNKEEINQIVCNPKSSFLACADDGG----DVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWE 161 (375)
Q Consensus 92 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg----~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 161 (375)
. +.+..- ..+-|+.+.|+|+++++|-+--+| .|+++|+..++....-. ..+.=.+-+|.|+++++
T Consensus 435 v-~~idkS--~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT--~ta~DfsPaFD~d~ryL 503 (668)
T COG4946 435 V-RLIDKS--EYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTT--PTAYDFSPAFDPDGRYL 503 (668)
T ss_pred e-eEeccc--ccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEecC--CcccccCcccCCCCcEE
Confidence 4 333222 256799999999999999887665 58999999887755443 33344667899999853
No 291
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=99.28 E-value=1e-10 Score=87.78 Aligned_cols=167 Identities=16% Similarity=0.164 Sum_probs=107.2
Q ss_pred CCeeeecCCCceeEEEEecCCCCEEEEeCCCCcEEEEecccCce-eeEeeecCccEEEEEEeCCCCeEEEEcC-----CC
Q 017194 7 KPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDV-QLVTDVGNGPVTSLCFKSGNEDIIYVSS-----GK 80 (375)
Q Consensus 7 ~~~~l~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~-~~~~~~~~~~v~~l~~~~~~~~l~~~~~-----d~ 80 (375)
..+.+..|+++-.+=+.+-. ++-++++..||.+.+.+.+.-.. ...+..-...-.+.+....++.+.++.. -+
T Consensus 81 ~~~~~a~~sep~p~~~~s~~-~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d 159 (319)
T KOG4714|consen 81 PFKVLAKNSEIDPNDACTMT-DNRVCIGYADGSLAVFSTDKDLALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQD 159 (319)
T ss_pred ceeeeeccCCCCCccccccc-CCceEecCCCceEEEEechHHHhhhhhcccccccccccceeecccEEecCCcceEeecc
Confidence 34455555554444333333 56799999999999999775211 1111111111122233344555544432 24
Q ss_pred eEEEEECCCCCcccccccccCCCcceeEEEEcCC-CCeEEEEeCCCcEEEEeCcCceee-eeEecCcccceeEEEEeeCC
Q 017194 81 EVKSFDVHMPASWRPLESYNYNKEEINQIVCNPK-SSFLACADDGGDVKIIDIRQHCLY-KSLRAGHSSICSSVQFIPWK 158 (375)
Q Consensus 81 ~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~-~~~~~~~~~~v~~~~~~~~~ 158 (375)
..+.|+++..+....- .. ....|.+++-+|. .+.+++|+.||.+.+||.+..... ..++ .|+.+++.+.|+|..
T Consensus 160 ~~~a~~~~p~~t~~~~-~~--~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~-ahk~~i~eV~FHpk~ 235 (319)
T KOG4714|consen 160 NFYANTLDPIKTLIPS-KK--ALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLK-AHKAEIWEVHFHPKN 235 (319)
T ss_pred ceeeeccccccccccc-cc--ccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHH-HhhhhhhheeccCCC
Confidence 5677776632221111 11 1344889999984 566788889999999999987543 4455 899999999999988
Q ss_pred CcEEEEeecCCeEEEeeCCC
Q 017194 159 PWEVISGGLDSKLVMWDFSK 178 (375)
Q Consensus 159 ~~~l~~~~~d~~i~~wd~~~ 178 (375)
+..|+++++||.+.-||..+
T Consensus 236 p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 236 PEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred chheeEecCCCcEEEEcCCC
Confidence 77899999999999999774
No 292
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.26 E-value=8.4e-09 Score=88.32 Aligned_cols=203 Identities=6% Similarity=0.030 Sum_probs=124.9
Q ss_pred CCCCeeeecCCCceeEEEEecCCCC-EEEEeCC---CCcEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEEcC-C
Q 017194 5 EAKPRRLRGHKATATCCIASRDRPG-FVASSGE---DGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSS-G 79 (375)
Q Consensus 5 ~~~~~~l~~h~~~i~~~~~~~~~~~-~l~s~~~---d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~-d 79 (375)
+...+.+... +.+....|+|| ++ .++..+. +..|.++|+.+++...... ..+......|+|||+.++.... +
T Consensus 178 g~~~~~~~~~-~~~~~p~wSpD-G~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~~g~~~~~~~SPDG~~la~~~~~~ 254 (419)
T PRK04043 178 LTYQKVIVKG-GLNIFPKWANK-EQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-SQGMLVVSDVSKDGSKLLLTMAPK 254 (419)
T ss_pred CCceeEEccC-CCeEeEEECCC-CCcEEEEEEccCCCCEEEEEECCCCcEEEEec-CCCcEEeeEECCCCCEEEEEEccC
Confidence 3334444433 36778999999 65 3553322 3569999998887644443 4555667889999987765432 3
Q ss_pred --CeEEEEECCCCCcccccccccCCCcceeEEEEcCCCCeEEEEeCC-C--cEEEEeCcCceeeeeEecCcccceeEEEE
Q 017194 80 --KEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDG-G--DVKIIDIRQHCLYKSLRAGHSSICSSVQF 154 (375)
Q Consensus 80 --~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-g--~i~iwd~~~~~~~~~~~~~~~~~v~~~~~ 154 (375)
..|.++|+.+++ ...+... ........|+|||+.|+..+.. + .|.++|+.+++..+... . ... ...|
T Consensus 255 g~~~Iy~~dl~~g~-~~~LT~~---~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~-~-g~~--~~~~ 326 (419)
T PRK04043 255 GQPDIYLYDTNTKT-LTQITNY---PGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVF-H-GKN--NSSV 326 (419)
T ss_pred CCcEEEEEECCCCc-EEEcccC---CCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCcc-C-CCc--CceE
Confidence 478888887654 3333332 2223456899999988776632 2 68888888776644332 1 111 2489
Q ss_pred eeCCCcEEEEeecC--------CeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEE
Q 017194 155 IPWKPWEVISGGLD--------SKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVA 226 (375)
Q Consensus 155 ~~~~~~~l~~~~~d--------~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~ 226 (375)
+|+|++++++.... ..|.+.|+.++.. ..+... .......|+| ||+.++..
T Consensus 327 SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~-~~LT~~--------------~~~~~p~~SP------DG~~I~f~ 385 (419)
T PRK04043 327 STYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYI-RRLTAN--------------GVNQFPRFSS------DGGSIMFI 385 (419)
T ss_pred CCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCe-EECCCC--------------CCcCCeEECC------CCCEEEEE
Confidence 99999544444432 3688888877653 333211 1223467888 78887776
Q ss_pred ecCC---cEEEEeCCC
Q 017194 227 KGDG---VVDVINIES 239 (375)
Q Consensus 227 ~~dg---~i~i~d~~~ 239 (375)
..++ .|.+.++..
T Consensus 386 ~~~~~~~~L~~~~l~g 401 (419)
T PRK04043 386 KYLGNQSALGIIRLNY 401 (419)
T ss_pred EccCCcEEEEEEecCC
Confidence 5432 355666654
No 293
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.25 E-value=8.6e-10 Score=89.34 Aligned_cols=293 Identities=14% Similarity=0.126 Sum_probs=184.9
Q ss_pred cCCCceeEEEEecCCCCEEEEeCCCCcEEEEeccc---CceeeEeeecCccEEEEEEeCCCCeEEEEcC-CCeEEEEECC
Q 017194 13 GHKATATCCIASRDRPGFVASSGEDGCICWFDLRS---KDVQLVTDVGNGPVTSLCFKSGNEDIIYVSS-GKEVKSFDVH 88 (375)
Q Consensus 13 ~h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~---~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~-d~~i~iwd~~ 88 (375)
-|.+.|+.+.... .+++.+++.||.++.|.-.. -+.++.+..|-..|.+++.+-++..+.+.+. |..++++|++
T Consensus 7 mhrd~i~hv~~tk--a~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvE 84 (558)
T KOG0882|consen 7 MHRDVITHVFPTK--AKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVE 84 (558)
T ss_pred cccceeeeEeeeh--hheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEee
Confidence 4888999877665 47999999999999998543 1235556678899999999999999999777 9999999998
Q ss_pred CCCcccccccccCCCcceeEEEEcCCC--CeEEEE-eCCCcEEEEeCcCce-eeeeEecCcccceeEEEEeeCCCcEEEE
Q 017194 89 MPASWRPLESYNYNKEEINQIVCNPKS--SFLACA-DDGGDVKIIDIRQHC-LYKSLRAGHSSICSSVQFIPWKPWEVIS 164 (375)
Q Consensus 89 ~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~~-~~dg~i~iwd~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~l~~ 164 (375)
+-.....++.... .+.+. ...++.. ..|+++ -.++.+.++|-.... ....++.-|..+|..+.+.|-+. .+++
T Consensus 85 n~DminmiKL~~l-Pg~a~-wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~D-s~vS 161 (558)
T KOG0882|consen 85 NFDMINMIKLVDL-PGFAE-WVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGD-SAVS 161 (558)
T ss_pred ccchhhhcccccC-CCceE-EecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeecccc-ceee
Confidence 6433322222111 22222 2223321 134433 367899999976442 33334437899999999999998 6889
Q ss_pred eecCCeEEEeeCCC-C-CcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCcce
Q 017194 165 GGLDSKLVMWDFSK-G-RPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELN 242 (375)
Q Consensus 165 ~~~d~~i~~wd~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~ 242 (375)
....|.|.-|.... - .+...+..........-...-......++.|+| ++..+.+-+.|..|++++.++++.
T Consensus 162 iD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp------~g~qistl~~DrkVR~F~~KtGkl 235 (558)
T KOG0882|consen 162 IDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSP------DGAQISTLNPDRKVRGFVFKTGKL 235 (558)
T ss_pred ccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEcc------ccCcccccCcccEEEEEEeccchh
Confidence 88999999999773 1 111111111111111111112345678999999 799999999999999999999876
Q ss_pred eecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCc-cEEEEEEeecCCCCcEEEEecCCCeEEEEe
Q 017194 243 ISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTA-AASCVAFSMFGERGKYLISGGNDKLVKVWD 321 (375)
Q Consensus 243 ~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd 321 (375)
............... -+|- +.....-.+++.....+..|.. .-..+.|. ..|++|+-|+.=| |++.+
T Consensus 236 vqeiDE~~t~~~~q~-ks~y-------~l~~VelgRRmaverelek~~~~~~~~~~fd---es~~flly~t~~g-ikvin 303 (558)
T KOG0882|consen 236 VQEIDEVLTDAQYQP-KSPY-------GLMHVELGRRMAVERELEKHGSTVGTNAVFD---ESGNFLLYGTILG-IKVIN 303 (558)
T ss_pred hhhhhccchhhhhcc-cccc-------ccceeehhhhhhHHhhHhhhcCcccceeEEc---CCCCEEEeeccee-EEEEE
Confidence 665433221110000 0000 0000111122222233444433 23456677 8899999998765 89999
Q ss_pred CCCceee
Q 017194 322 CSRFQGV 328 (375)
Q Consensus 322 ~~~~~~~ 328 (375)
+.++...
T Consensus 304 ~~tn~v~ 310 (558)
T KOG0882|consen 304 LDTNTVV 310 (558)
T ss_pred eecCeEE
Confidence 9988665
No 294
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=99.24 E-value=1.5e-09 Score=93.98 Aligned_cols=156 Identities=14% Similarity=0.185 Sum_probs=125.1
Q ss_pred ccEEEEEEeCCCCeEEEEcCCCeEEEEECCCCCcccccccccCCCcceeEEEEcCCC------------CeEEEEeCCCc
Q 017194 59 GPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKS------------SFLACADDGGD 126 (375)
Q Consensus 59 ~~v~~l~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~------------~~l~~~~~dg~ 126 (375)
..-.++.|+|.| .++.|+ ...|.+-|..+ .+.++.++.|...|+.+.|.|.. -.||++...|.
T Consensus 16 sN~~A~Dw~~~G-LiAygs-hslV~VVDs~s---~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~Gr 90 (1062)
T KOG1912|consen 16 SNRNAADWSPSG-LIAYGS-HSLVSVVDSRS---LQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGR 90 (1062)
T ss_pred ccccccccCccc-eEEEec-CceEEEEehhh---hhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCc
Confidence 335678999987 566666 66788889874 67777778889999999998731 24778888999
Q ss_pred EEEEeCcCceeeeeEecCcccceeEEEEeeCC---CcEEEEeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCC
Q 017194 127 VKIIDIRQHCLYKSLRAGHSSICSSVQFIPWK---PWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPA 203 (375)
Q Consensus 127 i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~---~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (375)
|.+||...+..+..+. .|..++..++|-+.. +.+|+.-.....+.+|+..+|+.+....+. ..
T Consensus 91 Iil~d~~~~s~~~~l~-~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys-------------~~ 156 (1062)
T KOG1912|consen 91 IILVDFVLASVINWLS-HSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYS-------------HE 156 (1062)
T ss_pred EEEEEehhhhhhhhhc-CCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccC-------------Cc
Confidence 9999999988888888 888999999998743 246777777889999999999999888765 35
Q ss_pred ceeEEeecCCccccCCCCEEEEEecCCcEEEEeCC
Q 017194 204 FVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIE 238 (375)
Q Consensus 204 ~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~ 238 (375)
...++.+.|. +.+.+..-+..|.+.+-+.-
T Consensus 157 iLs~f~~DPf-----d~rh~~~l~s~g~vl~~~~l 186 (1062)
T KOG1912|consen 157 ILSCFRVDPF-----DSRHFCVLGSKGFVLSCKDL 186 (1062)
T ss_pred ceeeeeeCCC-----CcceEEEEccCceEEEEecc
Confidence 5667899886 78888888888888777654
No 295
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=99.24 E-value=2.3e-07 Score=74.37 Aligned_cols=194 Identities=14% Similarity=0.177 Sum_probs=127.3
Q ss_pred EEEEecCCCCEEEEeCCCCcEEEEecccCceeeEeeecCccEEEEEEe-CCCCeEEEEcCCCeEEEEECCCCCccccccc
Q 017194 20 CCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFK-SGNEDIIYVSSGKEVKSFDVHMPASWRPLES 98 (375)
Q Consensus 20 ~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~-~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~ 98 (375)
++.|.+.++.++++--..+.|..|+..+++.. .+.... ...+++. +++. |+.+... .+.++|+.+++.......
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~-~~~~~~--~~G~~~~~~~g~-l~v~~~~-~~~~~d~~~g~~~~~~~~ 78 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVE-VIDLPG--PNGMAFDRPDGR-LYVADSG-GIAVVDPDTGKVTVLADL 78 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEE-EEESSS--EEEEEEECTTSE-EEEEETT-CEEEEETTTTEEEEEEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEE-EEecCC--CceEEEEccCCE-EEEEEcC-ceEEEecCCCcEEEEeec
Confidence 57888854788888888899999999877643 233222 6777887 6654 5555544 455669887644333332
Q ss_pred c-cC-CCcceeEEEEcCCCCeEEEEeCC--------CcEEEEeCcCceeeeeEecCcccceeEEEEeeCCCcEEEEeecC
Q 017194 99 Y-NY-NKEEINQIVCNPKSSFLACADDG--------GDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLD 168 (375)
Q Consensus 99 ~-~~-~~~~v~~~~~~~~~~~l~~~~~d--------g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d 168 (375)
. .. .....+.+++.|+|++.++.... |.|..++.. ++...... .-...+.|+|+|+++.++++-+..
T Consensus 79 ~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~--~~~~pNGi~~s~dg~~lyv~ds~~ 155 (246)
T PF08450_consen 79 PDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVAD--GLGFPNGIAFSPDGKTLYVADSFN 155 (246)
T ss_dssp ETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEE--EESSEEEEEEETTSSEEEEEETTT
T ss_pred cCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEec--CcccccceEECCcchheeeccccc
Confidence 2 11 34678899999999977665533 557777776 55444333 345678999999998555677888
Q ss_pred CeEEEeeCCCCCc-ce---EE-ecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCC
Q 017194 169 SKLVMWDFSKGRP-NK---IV-NFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIE 238 (375)
Q Consensus 169 ~~i~~wd~~~~~~-~~---~~-~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~ 238 (375)
+.|..+++..... +. .+ .... .....-.+++.. +|++.++....+.|.++|..
T Consensus 156 ~~i~~~~~~~~~~~~~~~~~~~~~~~-----------~~g~pDG~~vD~------~G~l~va~~~~~~I~~~~p~ 213 (246)
T PF08450_consen 156 GRIWRFDLDADGGELSNRRVFIDFPG-----------GPGYPDGLAVDS------DGNLWVADWGGGRIVVFDPD 213 (246)
T ss_dssp TEEEEEEEETTTCCEEEEEEEEE-SS-----------SSCEEEEEEEBT------TS-EEEEEETTTEEEEEETT
T ss_pred ceeEEEeccccccceeeeeeEEEcCC-----------CCcCCCcceEcC------CCCEEEEEcCCCEEEEECCC
Confidence 9999999864332 21 11 2110 012467888887 79888887888999999987
No 296
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.23 E-value=1.5e-07 Score=71.32 Aligned_cols=150 Identities=9% Similarity=0.073 Sum_probs=100.2
Q ss_pred EEEecCCCCEEEEeCCCCcEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEEcCCCeEEEEECCCCCccccccccc
Q 017194 21 CIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYN 100 (375)
Q Consensus 21 ~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~ 100 (375)
+...++...+++.|+..+.+.--|.++|+.+..-.. ...|.+-+.- -|++++.|+..|.+++.+.+++.........
T Consensus 16 LVV~~dskT~v~igSHs~~~~avd~~sG~~~We~il-g~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~- 92 (354)
T KOG4649|consen 16 LVVCNDSKTLVVIGSHSGIVIAVDPQSGNLIWEAIL-GVRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIWNFVIL- 92 (354)
T ss_pred EEEecCCceEEEEecCCceEEEecCCCCcEEeehhh-CceeeeeeEE-ECCEEEEEEccCcEEEEEecchhheeeeeeh-
Confidence 344555467888999999999999999987544321 2333333222 3678999999999999999998655554443
Q ss_pred CCCccee-EEEEcCCCCeEEEEeCCCcEEEEeCcCceeeeeEecCcccceeEEEEeeCCCcEEEEeecCCeEEEeeCCC
Q 017194 101 YNKEEIN-QIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSK 178 (375)
Q Consensus 101 ~~~~~v~-~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~ 178 (375)
+.|. .....+++..+..|+.|++.+..|.++...+...+ --.+...+-+..|-.. .|..+...|.+.--..+.
T Consensus 93 ---~~vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVyksk-cgG~~f~sP~i~~g~~-sly~a~t~G~vlavt~~~ 166 (354)
T KOG4649|consen 93 ---ETVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSK-CGGGTFVSPVIAPGDG-SLYAAITAGAVLAVTKNP 166 (354)
T ss_pred ---hhhccceEEcCCCceEEEecCCCcEEEecccccceEEecc-cCCceeccceecCCCc-eEEEEeccceEEEEccCC
Confidence 2222 24466789999999999999999999988887766 2222333445555222 355555556555544443
No 297
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.23 E-value=1e-08 Score=87.77 Aligned_cols=173 Identities=14% Similarity=0.104 Sum_probs=106.5
Q ss_pred CcEEEEecccCceeeEeeecCccEEEEEEeCCCCe-EEEEcCC---CeEEEEECCCCCcccccccccCCCcceeEEEEcC
Q 017194 38 GCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNED-IIYVSSG---KEVKSFDVHMPASWRPLESYNYNKEEINQIVCNP 113 (375)
Q Consensus 38 ~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~-l~~~~~d---~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~ 113 (375)
..|.+-|..... .+.+.... ......|+|+|+. ++..+.+ ..|.++|+.+++. ..+... .+......|+|
T Consensus 169 ~~l~~~d~dg~~-~~~~~~~~-~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~-~~lt~~---~g~~~~~~~SP 242 (419)
T PRK04043 169 SNIVLADYTLTY-QKVIVKGG-LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKK-EKIASS---QGMLVVSDVSK 242 (419)
T ss_pred ceEEEECCCCCc-eeEEccCC-CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcE-EEEecC---CCcEEeeEECC
Confidence 345555554333 33333333 7778999999985 6554443 4799999987654 333332 44566788999
Q ss_pred CCCeEEEEe-C--CCcEEEEeCcCceeeeeEecCcccceeEEEEeeCCCcEEEEeecCC--eEEEeeCCCCCcceEEecC
Q 017194 114 KSSFLACAD-D--GGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDS--KLVMWDFSKGRPNKIVNFG 188 (375)
Q Consensus 114 ~~~~l~~~~-~--dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~--~i~~wd~~~~~~~~~~~~~ 188 (375)
||+.++... . +..|.++|+.+++. ..+. .+........|+|||+.++++....+ .|.+.|+.+++..+....+
T Consensus 243 DG~~la~~~~~~g~~~Iy~~dl~~g~~-~~LT-~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~g 320 (419)
T PRK04043 243 DGSKLLLTMAPKGQPDIYLYDTNTKTL-TQIT-NYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFHG 320 (419)
T ss_pred CCCEEEEEEccCCCcEEEEEECCCCcE-EEcc-cCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccCC
Confidence 998776543 2 35688889877764 3444 33333445689999985555554444 6788888766553322111
Q ss_pred CCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecC---------CcEEEEeCCCc
Q 017194 189 LPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGD---------GVVDVINIESE 240 (375)
Q Consensus 189 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~d---------g~i~i~d~~~~ 240 (375)
.. ...|+| +|+.++..... ..|.+.|+.++
T Consensus 321 --------------~~--~~~~SP------DG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g 359 (419)
T PRK04043 321 --------------KN--NSSVST------YKNYIVYSSRETNNEFGKNTFNLYLISTNSD 359 (419)
T ss_pred --------------Cc--CceECC------CCCEEEEEEcCCCcccCCCCcEEEEEECCCC
Confidence 11 237888 78888776643 25777777654
No 298
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=99.22 E-value=1.2e-07 Score=75.31 Aligned_cols=209 Identities=13% Similarity=0.103 Sum_probs=139.8
Q ss_pred eeEEEEecCCCCEEEEeCCCCc-EEEEecccCceeeEeeecCccEE--EEEEeCCCCeEEEEcCC-----CeEEEEECCC
Q 017194 18 ATCCIASRDRPGFVASSGEDGC-ICWFDLRSKDVQLVTDVGNGPVT--SLCFKSGNEDIIYVSSG-----KEVKSFDVHM 89 (375)
Q Consensus 18 i~~~~~~~~~~~~l~s~~~d~~-i~iw~~~~~~~~~~~~~~~~~v~--~l~~~~~~~~l~~~~~d-----~~i~iwd~~~ 89 (375)
...++.+|..+..++.+-.-|+ ..+||..+++....+....+.-. .-.|++||++|++.-.| |.|-|||...
T Consensus 7 gH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~ 86 (305)
T PF07433_consen 7 GHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAAR 86 (305)
T ss_pred ccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcC
Confidence 3457788865777777776654 78899999998877765433322 36799999999987554 7999999982
Q ss_pred CCcccccccccCCCcceeEEEEcCCCCeEEEEe------------------CCCcEEEEeCcCceeeeeEe---cCcccc
Q 017194 90 PASWRPLESYNYNKEEINQIVCNPKSSFLACAD------------------DGGDVKIIDIRQHCLYKSLR---AGHSSI 148 (375)
Q Consensus 90 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~------------------~dg~i~iwd~~~~~~~~~~~---~~~~~~ 148 (375)
..+.+..+..|.-.-..+.+.||++.|+++. .+-.+...|..+++.+.+.. ..|...
T Consensus 87 --~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lS 164 (305)
T PF07433_consen 87 --GYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLS 164 (305)
T ss_pred --CcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccccccc
Confidence 3566777766666677889999998887763 13346667778888877643 137778
Q ss_pred eeEEEEeeCCCcEEEEeecCCe-----EEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEE
Q 017194 149 CSSVQFIPWKPWEVISGGLDSK-----LVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKIC 223 (375)
Q Consensus 149 v~~~~~~~~~~~~l~~~~~d~~-----i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l 223 (375)
++.+++.++|. .++..-..|. -.+.-.+.++.+..+.... .....-...+-+|++++ ++.++
T Consensus 165 iRHLa~~~~G~-V~~a~Q~qg~~~~~~PLva~~~~g~~~~~~~~p~------~~~~~l~~Y~gSIa~~~------~g~~i 231 (305)
T PF07433_consen 165 IRHLAVDGDGT-VAFAMQYQGDPGDAPPLVALHRRGGALRLLPAPE------EQWRRLNGYIGSIAADR------DGRLI 231 (305)
T ss_pred eeeEEecCCCc-EEEEEecCCCCCccCCeEEEEcCCCcceeccCCh------HHHHhhCCceEEEEEeC------CCCEE
Confidence 99999999986 3333333321 1122222333333333220 00011236789999998 68777
Q ss_pred EEEe-cCCcEEEEeCCCcc
Q 017194 224 VVAK-GDGVVDVINIESEL 241 (375)
Q Consensus 224 ~~~~-~dg~i~i~d~~~~~ 241 (375)
++.+ ..|.+.+||..+++
T Consensus 232 a~tsPrGg~~~~~d~~tg~ 250 (305)
T PF07433_consen 232 AVTSPRGGRVAVWDAATGR 250 (305)
T ss_pred EEECCCCCEEEEEECCCCC
Confidence 6665 66789999999863
No 299
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=99.20 E-value=1.7e-08 Score=86.70 Aligned_cols=263 Identities=13% Similarity=0.093 Sum_probs=153.7
Q ss_pred CEEEEeCCCCcEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEEcCCCeEEEEECCCCCcccccccccCC-C-cce
Q 017194 29 GFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYN-K-EEI 106 (375)
Q Consensus 29 ~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~-~-~~v 106 (375)
..++.++.+|.+..+|.++|+.+...+.......+.... +..++.+..++.+..+|.++++..-........ . ...
T Consensus 121 ~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~ssP~v~--~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~ 198 (394)
T PRK11138 121 GKVYIGSEKGQVYALNAEDGEVAWQTKVAGEALSRPVVS--DGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGE 198 (394)
T ss_pred CEEEEEcCCCEEEEEECCCCCCcccccCCCceecCCEEE--CCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCC
Confidence 456677788999999999999877765432211111222 345777788899999999988754333221000 0 000
Q ss_pred eEEEEcCCCCeEEEEeCCCcEEEEeCcCceeeeeEecCccc------ceeEEEEee--CCCcEEEEeecCCeEEEeeCCC
Q 017194 107 NQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSS------ICSSVQFIP--WKPWEVISGGLDSKLVMWDFSK 178 (375)
Q Consensus 107 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~------~v~~~~~~~--~~~~~l~~~~~d~~i~~wd~~~ 178 (375)
.+... .+..++.++.+|.+..+|..+++.+......... ....+..+| .+. .++.++.+|.+..+|..+
T Consensus 199 ~sP~v--~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~-~vy~~~~~g~l~ald~~t 275 (394)
T PRK11138 199 SAPAT--AFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGG-VVYALAYNGNLVALDLRS 275 (394)
T ss_pred CCCEE--ECCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECC-EEEEEEcCCeEEEEECCC
Confidence 11111 1235777778899999999988876554310000 001111111 233 577777899999999999
Q ss_pred CCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCcceeecccccCCCCCCcee
Q 017194 179 GRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQS 258 (375)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~ 258 (375)
++.+...... . ...+.. .+..+++++.+|.+..+|..+++......
T Consensus 276 G~~~W~~~~~--------------~-~~~~~~--------~~~~vy~~~~~g~l~ald~~tG~~~W~~~----------- 321 (394)
T PRK11138 276 GQIVWKREYG--------------S-VNDFAV--------DGGRIYLVDQNDRVYALDTRGGVELWSQS----------- 321 (394)
T ss_pred CCEEEeecCC--------------C-ccCcEE--------ECCEEEEEcCCCeEEEEECCCCcEEEccc-----------
Confidence 9877665433 1 111222 36678888899999999998864332111
Q ss_pred ecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEecCCCeEEEEeCCCceeeeecchhhhhh
Q 017194 259 TSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLI 338 (375)
Q Consensus 259 ~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 338 (375)
.+ .+ ....+..+. +.+|+.++.||.|.+.|..+++.. .
T Consensus 322 --------------------------~~-~~-~~~~sp~v~-----~g~l~v~~~~G~l~~ld~~tG~~~---------~ 359 (394)
T PRK11138 322 --------------------------DL-LH-RLLTAPVLY-----NGYLVVGDSEGYLHWINREDGRFV---------A 359 (394)
T ss_pred --------------------------cc-CC-CcccCCEEE-----CCEEEEEeCCCEEEEEECCCCCEE---------E
Confidence 00 00 111122222 346778889999999999998432 2
Q ss_pred hhcccccceee-eeecCCCCCcEEEeeCCCeEEEEecC
Q 017194 339 KNINLNKKVNW-LCTTPTESENLVVCDTSKVVKVYSIS 375 (375)
Q Consensus 339 ~~~~~~~~v~~-~~~~~~~~~~l~s~~~dg~v~iw~~~ 375 (375)
...-....+.. -.+ .+..|+.++.||.|+.++.+
T Consensus 360 ~~~~~~~~~~s~P~~---~~~~l~v~t~~G~l~~~~~~ 394 (394)
T PRK11138 360 QQKVDSSGFLSEPVV---ADDKLLIQARDGTVYAITRP 394 (394)
T ss_pred EEEcCCCcceeCCEE---ECCEEEEEeCCceEEEEeCC
Confidence 21111112221 111 23478889999999988763
No 300
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=99.19 E-value=2e-07 Score=74.71 Aligned_cols=225 Identities=13% Similarity=0.090 Sum_probs=140.5
Q ss_pred EEEEeC-CCCeEEEEcCCCeEEEEECCCCCcccccccccCCCcceeEEEEc-CCCCeEEEEeCCCcEEEEeCcCceeeee
Q 017194 63 SLCFKS-GNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCN-PKSSFLACADDGGDVKIIDIRQHCLYKS 140 (375)
Q Consensus 63 ~l~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 140 (375)
++.|.+ ++.++++-...+.|..|+..++.. ..+ .. .....+++. +++ .++++... .+.++|+.+++....
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~-~~~-~~----~~~~G~~~~~~~g-~l~v~~~~-~~~~~d~~~g~~~~~ 75 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEV-EVI-DL----PGPNGMAFDRPDG-RLYVADSG-GIAVVDPDTGKVTVL 75 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEE-EEE-ES----SSEEEEEEECTTS-EEEEEETT-CEEEEETTTTEEEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeE-EEE-ec----CCCceEEEEccCC-EEEEEEcC-ceEEEecCCCcEEEE
Confidence 578888 666666666789999999986532 111 11 226777777 565 55555554 456669888865443
Q ss_pred Eec---C-cccceeEEEEeeCCCcEEEEeecC--------CeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEE
Q 017194 141 LRA---G-HSSICSSVQFIPWKPWEVISGGLD--------SKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAI 208 (375)
Q Consensus 141 ~~~---~-~~~~v~~~~~~~~~~~~l~~~~~d--------~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 208 (375)
... . .....+.+++.|+|. +.++.... |.|..++.. ++...... . -...+.|
T Consensus 76 ~~~~~~~~~~~~~ND~~vd~~G~-ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~-~-------------~~~pNGi 139 (246)
T PF08450_consen 76 ADLPDGGVPFNRPNDVAVDPDGN-LYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVAD-G-------------LGFPNGI 139 (246)
T ss_dssp EEEETTCSCTEEEEEEEE-TTS--EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEE-E-------------ESSEEEE
T ss_pred eeccCCCcccCCCceEEEcCCCC-EEEEecCCCccccccccceEEECCC-CeEEEEec-C-------------cccccce
Confidence 331 1 345788999999998 66665533 567777776 44333332 1 2457899
Q ss_pred eecCCccccCCCCEEE-EEecCCcEEEEeCCCcceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeec
Q 017194 209 AIPDADMLDKTNKICV-VAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVG 287 (375)
Q Consensus 209 ~~~~~~~~~~~~~~l~-~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~ 287 (375)
+|+| +++.|+ +-+..+.|..|++....... ...+....+.
T Consensus 140 ~~s~------dg~~lyv~ds~~~~i~~~~~~~~~~~~---------------------------------~~~~~~~~~~ 180 (246)
T PF08450_consen 140 AFSP------DGKTLYVADSFNGRIWRFDLDADGGEL---------------------------------SNRRVFIDFP 180 (246)
T ss_dssp EEET------TSSEEEEEETTTTEEEEEEEETTTCCE---------------------------------EEEEEEEE-S
T ss_pred EECC------cchheeecccccceeEEEeccccccce---------------------------------eeeeeEEEcC
Confidence 9999 788766 55677889998886421100 0112223333
Q ss_pred CCCccEEEEEEeecCCCCcEEEEecCCCeEEEEeCCCceeeeecchhhhhhhhcccccceeeeeecCCCCCcEEEe
Q 017194 288 GHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVC 363 (375)
Q Consensus 288 ~~~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~ 363 (375)
......-.+++. .+|++.++.-..+.|.+++.+ + +++..+.-....+++++|..++.+.|+..
T Consensus 181 ~~~g~pDG~~vD---~~G~l~va~~~~~~I~~~~p~-G---------~~~~~i~~p~~~~t~~~fgg~~~~~L~vT 243 (246)
T PF08450_consen 181 GGPGYPDGLAVD---SDGNLWVADWGGGRIVVFDPD-G---------KLLREIELPVPRPTNCAFGGPDGKTLYVT 243 (246)
T ss_dssp SSSCEEEEEEEB---TTS-EEEEEETTTEEEEEETT-S---------CEEEEEE-SSSSEEEEEEESTTSSEEEEE
T ss_pred CCCcCCCcceEc---CCCCEEEEEcCCCEEEEECCC-c---------cEEEEEcCCCCCEEEEEEECCCCCEEEEE
Confidence 333457889999 899988887788999999988 5 33333333345789999964365555544
No 301
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=99.18 E-value=9.1e-11 Score=91.64 Aligned_cols=163 Identities=15% Similarity=0.197 Sum_probs=121.4
Q ss_pred EEEecCCCCEEEEeCCCCcEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEEcCCCeEEEEECCCCCcc--ccccc
Q 017194 21 CIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASW--RPLES 98 (375)
Q Consensus 21 ~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i~iwd~~~~~~~--~~~~~ 98 (375)
++|+-+-..+-++.+.+..|-+-|+++|-. +.+. ....|.++.|...++.+..|+..|.|...|++..... .....
T Consensus 217 CawSlni~gyhfs~G~sqqv~L~nvetg~~-qsf~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~r 294 (425)
T KOG2695|consen 217 CAWSLNIMGYHFSVGLSQQVLLTNVETGHQ-QSFQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQR 294 (425)
T ss_pred hhhhhccceeeecccccceeEEEEeecccc-cccc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEE
Confidence 366543222335556667788999988763 3344 5778999999998999999999999999999864221 11111
Q ss_pred ccCCCcceeEEEEcC-CCCeEEEEeCCCcEEEEeCcCcee---eeeEecCcccceeEE--EEeeCCCcEEEEeecCCeEE
Q 017194 99 YNYNKEEINQIVCNP-KSSFLACADDGGDVKIIDIRQHCL---YKSLRAGHSSICSSV--QFIPWKPWEVISGGLDSKLV 172 (375)
Q Consensus 99 ~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~---~~~~~~~~~~~v~~~--~~~~~~~~~l~~~~~d~~i~ 172 (375)
-.|...|+++.... ++++|++.+.+|.|++||++.-+. +.++. +|-..-.-+ ...+... .+++++.|...+
T Consensus 295 -lyh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYe-GHvN~~a~l~~~v~~eeg-~I~s~GdDcytR 371 (425)
T KOG2695|consen 295 -LYHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYE-GHVNLSAYLPAHVKEEEG-SIFSVGDDCYTR 371 (425)
T ss_pred -EEcCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeee-cccccccccccccccccc-eEEEccCeeEEE
Confidence 23688999998877 788999999999999999986655 77888 886533322 3344545 788999999999
Q ss_pred EeeCCCCCcceEEecC
Q 017194 173 MWDFSKGRPNKIVNFG 188 (375)
Q Consensus 173 ~wd~~~~~~~~~~~~~ 188 (375)
+|.++.+..+.++.+.
T Consensus 372 iWsl~~ghLl~tipf~ 387 (425)
T KOG2695|consen 372 IWSLDSGHLLCTIPFP 387 (425)
T ss_pred EEecccCceeeccCCC
Confidence 9999999999888754
No 302
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=99.17 E-value=4.5e-08 Score=78.17 Aligned_cols=227 Identities=16% Similarity=0.110 Sum_probs=135.5
Q ss_pred CCcEEEEecccCceeeEeeecC--ccEEEEEEeCCCCeEEEEcCCCeEEEEECCCCCcccccccccCCCcceeEEEEcCC
Q 017194 37 DGCICWFDLRSKDVQLVTDVGN--GPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPK 114 (375)
Q Consensus 37 d~~i~iw~~~~~~~~~~~~~~~--~~v~~l~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 114 (375)
+|+|..||..+|+.+....... ....+. ..+++..+++++.++.|..||..+++..-....- ..+.... ...
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~----~~~~~~~-~~~ 75 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPGIGGPVAT-AVPDGGRVYVASGDGNLYALDAKTGKVLWRFDLP----GPISGAP-VVD 75 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSSCSSEEET-EEEETTEEEEEETTSEEEEEETTTSEEEEEEECS----SCGGSGE-EEE
T ss_pred CCEEEEEECCCCCEEEEEECCCCCCCccce-EEEeCCEEEEEcCCCEEEEEECCCCCEEEEeecc----cccccee-eec
Confidence 6889999999999888776421 122211 2335667888888999999999988654433331 1111111 224
Q ss_pred CCeEEEEeCCCcEEEEeCcCceeeeeE-ecCcc---cceeEEEEeeCCCcEEEEeecCCeEEEeeCCCCCcceEEecCCC
Q 017194 115 SSFLACADDGGDVKIIDIRQHCLYKSL-RAGHS---SICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLP 190 (375)
Q Consensus 115 ~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~---~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~ 190 (375)
+..+++++.++.++.+|.++++.+... . ... ...........++ .++.+..++.|..+|+++|+.+.......+
T Consensus 76 ~~~v~v~~~~~~l~~~d~~tG~~~W~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~ 153 (238)
T PF13360_consen 76 GGRVYVGTSDGSLYALDAKTGKVLWSIYL-TSSPPAGVRSSSSPAVDGD-RLYVGTSSGKLVALDPKTGKLLWKYPVGEP 153 (238)
T ss_dssp TTEEEEEETTSEEEEEETTTSCEEEEEEE--SSCTCSTB--SEEEEETT-EEEEEETCSEEEEEETTTTEEEEEEESSTT
T ss_pred ccccccccceeeeEecccCCcceeeeecc-ccccccccccccCceEecC-EEEEEeccCcEEEEecCCCcEEEEeecCCC
Confidence 456777778889999999999998874 3 221 1112223333355 688888899999999999999888876421
Q ss_pred CCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCcceeecccccCCCCCCceeecccccceeeee
Q 017194 191 ENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEME 270 (375)
Q Consensus 191 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~ 270 (375)
....... ........+.+. ++ .+++++.++.+.-+|+.+++..
T Consensus 154 ~~~~~~~--~~~~~~~~~~~~-------~~-~v~~~~~~g~~~~~d~~tg~~~--------------------------- 196 (238)
T PF13360_consen 154 RGSSPIS--SFSDINGSPVIS-------DG-RVYVSSGDGRVVAVDLATGEKL--------------------------- 196 (238)
T ss_dssp -SS--EE--EETTEEEEEECC-------TT-EEEEECCTSSEEEEETTTTEEE---------------------------
T ss_pred CCCccee--eecccccceEEE-------CC-EEEEEcCCCeEEEEECCCCCEE---------------------------
Confidence 1000000 000011222222 24 7777777775444498875311
Q ss_pred eeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEecCCCeEEEEeCCCcee
Q 017194 271 ILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQG 327 (375)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd~~~~~~ 327 (375)
..... ..+..+ .. .++..|+.++.++.|..||+++++.
T Consensus 197 -------------w~~~~--~~~~~~-~~---~~~~~l~~~~~~~~l~~~d~~tG~~ 234 (238)
T PF13360_consen 197 -------------WSKPI--SGIYSL-PS---VDGGTLYVTSSDGRLYALDLKTGKV 234 (238)
T ss_dssp -------------EEECS--S-ECEC-EE---CCCTEEEEEETTTEEEEEETTTTEE
T ss_pred -------------EEecC--CCccCC-ce---eeCCEEEEEeCCCEEEEEECCCCCE
Confidence 11111 112221 22 5667777777999999999999853
No 303
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=99.17 E-value=1.6e-08 Score=76.74 Aligned_cols=159 Identities=10% Similarity=0.005 Sum_probs=114.8
Q ss_pred EEEEeCCCCcEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEEcCCCeEEEEECCCCCcccccccccCCCcceeEE
Q 017194 30 FVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQI 109 (375)
Q Consensus 30 ~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~ 109 (375)
.+..++.|.++++.+++-+.....+....-.+.+++++++++++++.+....|..|.+........-.........=.+.
T Consensus 130 ~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~ 209 (344)
T KOG4532|consen 130 PLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYN 209 (344)
T ss_pred ceeeccCCcceeEEEEecCcccceeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceee
Confidence 46667888889998887655443333222348899999999999999999999999987643322111222223445678
Q ss_pred EEcCCCCeEEEEeCCCcEEEEeCcCceeeee----EecCcccceeEEEEeeCCCc-EEEEeecCCeEEEeeCCCCCcceE
Q 017194 110 VCNPKSSFLACADDGGDVKIIDIRQHCLYKS----LRAGHSSICSSVQFIPWKPW-EVISGGLDSKLVMWDFSKGRPNKI 184 (375)
Q Consensus 110 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~----~~~~~~~~v~~~~~~~~~~~-~l~~~~~d~~i~~wd~~~~~~~~~ 184 (375)
.|+.....+|++..||++.|||++....... -+..|.+.++.+.|++.|.. +|+..-.-+.+.+.|+++++..+.
T Consensus 210 S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~ 289 (344)
T KOG4532|consen 210 SFSENDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQV 289 (344)
T ss_pred eeccCcceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeE
Confidence 8999999999999999999999986533221 12268899999999987652 455555567899999999987777
Q ss_pred EecC
Q 017194 185 VNFG 188 (375)
Q Consensus 185 ~~~~ 188 (375)
+...
T Consensus 290 I~i~ 293 (344)
T KOG4532|consen 290 IVIP 293 (344)
T ss_pred EecC
Confidence 6643
No 304
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.13 E-value=1.3e-08 Score=81.44 Aligned_cols=263 Identities=15% Similarity=0.138 Sum_probs=146.6
Q ss_pred EEEEECCCCCcccccccccCCCcceeEEEEcCCCC-eEEEEeCCCcEEEEeCcCceeeeeEecCcccceeEEEEeeCCCc
Q 017194 82 VKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSS-FLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPW 160 (375)
Q Consensus 82 i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 160 (375)
+++.+..+ .+..+-+..+...|.+++|+|..+ ++..++.+..|+|.|+++...+..+. .+ ..+++++|.-+...
T Consensus 175 v~~l~~~~---fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~-a~-~~~wSC~wDlde~h 249 (463)
T KOG1645|consen 175 VQKLESHD---FKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYI-AY-NQIWSCCWDLDERH 249 (463)
T ss_pred eEEeccCC---cchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeehee-cc-CCceeeeeccCCcc
Confidence 44554443 233445566788999999999776 78889999999999999999999888 66 78999999998887
Q ss_pred EEEEeecCCeEEEeeCCCCCcce-EEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCC
Q 017194 161 EVISGGLDSKLVMWDFSKGRPNK-IVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIES 239 (375)
Q Consensus 161 ~l~~~~~d~~i~~wd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 239 (375)
++..|-..|.|.+||++..+-.. .+.... ...+|..++.-+.....+.+.+|+....+ +..|++..
T Consensus 250 ~IYaGl~nG~VlvyD~R~~~~~~~e~~a~~-----------t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~ 316 (463)
T KOG1645|consen 250 VIYAGLQNGMVLVYDMRQPEGPLMELVANV-----------TINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVF 316 (463)
T ss_pred eeEEeccCceEEEEEccCCCchHhhhhhhh-----------ccCcceeecccCccccccccceEEeeehh--hhhhhhhc
Confidence 88899999999999999754322 211100 12234443332211111235555555544 56666654
Q ss_pred cceeecccccCCCCCCceeecccc--cceeeeee--------------eecCCcce-eEeeeeecCC-CccE--EEEEEe
Q 017194 240 ELNISRSKSTTKPLKGSQSTSKVN--IRDAEMEI--------------LDQSGGKR-LHLDYSVGGH-TAAA--SCVAFS 299 (375)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~s~~g--~~~~~~~~--------------~~~~~~~~-~~~~~~~~~~-~~~v--~~~~~s 299 (375)
...-.....+.+++-.++.+.-++ +.+..... .+..++.. ........+. ...+ ....+.
T Consensus 317 s~~~~p~vlele~pG~cismqy~~~snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~ 396 (463)
T KOG1645|consen 317 SAECLPCVLELEPPGICISMQYHGVSNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRA 396 (463)
T ss_pred cccCCCcccccCCCcceeeeeecCccceEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceec
Confidence 332222222222333333333322 22222111 11111110 0000111010 0000 011122
Q ss_pred ecCCCCcEEE-EecCCCeEEEEeCCCceeeeecchhhhhhhhcccccceeeeeecCCCC-CcEEEeeCCCeEEEEecC
Q 017194 300 MFGERGKYLI-SGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTES-ENLVVCDTSKVVKVYSIS 375 (375)
Q Consensus 300 ~~~~~~~~l~-s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~l~s~~~dg~v~iw~~~ 375 (375)
+ ++..+++ .++..+.+.+||..+. ++++.+. ...+|.+++....++ .+|++- .|..++|+..+
T Consensus 397 ~--~~nn~iv~~gd~tn~lil~D~~s~---------evvQ~l~-~~epv~Dicp~~~n~~syLa~L-Td~~v~Iyk~e 461 (463)
T KOG1645|consen 397 V--EDNNYIVVVGDSTNELILQDPHSF---------EVVQTLA-LSEPVLDICPNDTNGSSYLALL-TDDRVHIYKNE 461 (463)
T ss_pred c--ccccEEEEecCCcceeEEeccchh---------heeeecc-cCcceeecceeecCCcchhhhe-ecceEEEEecC
Confidence 1 4555555 5566788999999998 4443333 337888887765444 455555 45578887643
No 305
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.09 E-value=6.3e-09 Score=84.48 Aligned_cols=224 Identities=13% Similarity=0.044 Sum_probs=151.8
Q ss_pred cCccEEEEEEeCCCCeEEEEcCCCeEEEEECCCCCcccccccccCCCcceeEEEEcCCCCeEEEEeC-CCcEEEEeCcCc
Q 017194 57 GNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADD-GGDVKIIDIRQH 135 (375)
Q Consensus 57 ~~~~v~~l~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~ 135 (375)
|.+.|+.+.-. -.+++++++.||.++.|.-..-.....+..+..|...|.+++.+.++.++.+.+. |..++++|+++-
T Consensus 8 hrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~ 86 (558)
T KOG0882|consen 8 HRDVITHVFPT-KAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENF 86 (558)
T ss_pred ccceeeeEeee-hhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeecc
Confidence 67777776554 4578999999999999986643445667777788899999999999999999777 999999999876
Q ss_pred eeeeeEecCcccceeEEEE--eeCCC--cEEEEeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeec
Q 017194 136 CLYKSLRAGHSSICSSVQF--IPWKP--WEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIP 211 (375)
Q Consensus 136 ~~~~~~~~~~~~~v~~~~~--~~~~~--~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 211 (375)
..+.-++ .......+.| +|... .+-++.-.++.+.++|-....+...+... .|..+|..+.+.
T Consensus 87 DminmiK--L~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkk-----------lH~sPV~~i~y~ 153 (558)
T KOG0882|consen 87 DMINMIK--LVDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKK-----------LHFSPVKKIRYN 153 (558)
T ss_pred chhhhcc--cccCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecc-----------cccCceEEEEee
Confidence 5544333 1111122222 22211 12334446889999997755432222111 257899999999
Q ss_pred CCccccCCCCEEEEEecCCcEEEEeCCCcceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCc
Q 017194 212 DADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTA 291 (375)
Q Consensus 212 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (375)
| .+..+++....|.|.-|......+... ..+-|.+ +.-.-+..+.....
T Consensus 154 q------a~Ds~vSiD~~gmVEyWs~e~~~qfPr---------~~l~~~~----------------K~eTdLy~f~K~Kt 202 (558)
T KOG0882|consen 154 Q------AGDSAVSIDISGMVEYWSAEGPFQFPR---------TNLNFEL----------------KHETDLYGFPKAKT 202 (558)
T ss_pred c------cccceeeccccceeEeecCCCcccCcc---------ccccccc----------------cccchhhccccccc
Confidence 9 589999999999999999884111100 0000100 00112223334456
Q ss_pred cEEEEEEeecCCCCcEEEEecCCCeEEEEeCCCceee
Q 017194 292 AASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGV 328 (375)
Q Consensus 292 ~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd~~~~~~~ 328 (375)
...++.|+ |+|..+.+-+.|..|++++..+++..
T Consensus 203 ~pts~Efs---p~g~qistl~~DrkVR~F~~KtGklv 236 (558)
T KOG0882|consen 203 EPTSFEFS---PDGAQISTLNPDRKVRGFVFKTGKLV 236 (558)
T ss_pred CccceEEc---cccCcccccCcccEEEEEEeccchhh
Confidence 77889999 99999999999999999999998654
No 306
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=99.08 E-value=2.4e-10 Score=62.17 Aligned_cols=38 Identities=34% Similarity=0.469 Sum_probs=36.0
Q ss_pred CCCeeeecCCCceeEEEEecCCCCEEEEeCCCCcEEEEe
Q 017194 6 AKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFD 44 (375)
Q Consensus 6 ~~~~~l~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~ 44 (375)
++++++++|.++|++|+|+|+ +.+|++++.|++|++||
T Consensus 2 ~~~~~~~~h~~~i~~i~~~~~-~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSSINSIAWSPD-GNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEESSSSSEEEEEEETT-SSEEEEEETTSEEEEEE
T ss_pred eEEEEEcCCCCcEEEEEEecc-cccceeeCCCCEEEEEC
Confidence 567899999999999999999 89999999999999997
No 307
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=99.07 E-value=2.1e-07 Score=71.73 Aligned_cols=198 Identities=14% Similarity=0.117 Sum_probs=117.8
Q ss_pred eeEEEEecCCCCEEEEeCCCCcEEEEecccCceeeEeee-------cCccEEEEEEeCCC------CeEEEEcCCCeEEE
Q 017194 18 ATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDV-------GNGPVTSLCFKSGN------EDIIYVSSGKEVKS 84 (375)
Q Consensus 18 i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~-------~~~~v~~l~~~~~~------~~l~~~~~d~~i~i 84 (375)
=+-++|+|| +.+||.+...|+|+++|+...+ +..+.. -...|..+.|.+-. ..|++...+|.++-
T Consensus 46 WRkl~WSpD-~tlLa~a~S~G~i~vfdl~g~~-lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~S 123 (282)
T PF15492_consen 46 WRKLAWSPD-CTLLAYAESTGTIRVFDLMGSE-LFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRS 123 (282)
T ss_pred heEEEECCC-CcEEEEEcCCCeEEEEecccce-eEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeee
Confidence 356899999 8999999999999999987533 333322 13567777775422 24666777888877
Q ss_pred EECCC--CCcccccccc---cCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCceeeeeEecCcccceeEEEEeeCCC
Q 017194 85 FDVHM--PASWRPLESY---NYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKP 159 (375)
Q Consensus 85 wd~~~--~~~~~~~~~~---~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 159 (375)
|-+.. .+..+....+ ..+...|.++.++|..++|++|+.... +++. -+ +....+++-....+.+
T Consensus 124 y~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~------~~~~----s~-a~~~GLtaWRiL~~~P 192 (282)
T PF15492_consen 124 YLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQN------QDGM----SK-ASSCGLTAWRILSDSP 192 (282)
T ss_pred EEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCC------CCcc----cc-ccccCceEEEEcCCCC
Confidence 76532 2233332222 234678999999999888888764322 0000 00 1122333333333333
Q ss_pred cEE-EEeecCCe------EEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcE
Q 017194 160 WEV-ISGGLDSK------LVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVV 232 (375)
Q Consensus 160 ~~l-~~~~~d~~------i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i 232 (375)
++. ++...|+. ..+|.+-+.+... .... ....|..|.++| ||.+||+...+|.|
T Consensus 193 yyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs-~~~~------------~~d~i~kmSlSP------dg~~La~ih~sG~l 253 (282)
T PF15492_consen 193 YYKQVTSSEDDITASSKRRGLLRIPSFKFFS-RQGQ------------EQDGIFKMSLSP------DGSLLACIHFSGSL 253 (282)
T ss_pred cEEEccccCccccccccccceeeccceeeee-cccc------------CCCceEEEEECC------CCCEEEEEEcCCeE
Confidence 222 22222221 1233322211111 1111 357899999999 89999999999999
Q ss_pred EEEeCCCcceeeccc
Q 017194 233 DVINIESELNISRSK 247 (375)
Q Consensus 233 ~i~d~~~~~~~~~~~ 247 (375)
.+|++.+-+......
T Consensus 254 sLW~iPsL~~~~~W~ 268 (282)
T PF15492_consen 254 SLWEIPSLRLQRSWK 268 (282)
T ss_pred EEEecCcchhhcccc
Confidence 999999866555443
No 308
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=99.05 E-value=2e-07 Score=85.25 Aligned_cols=241 Identities=9% Similarity=0.099 Sum_probs=140.3
Q ss_pred CCceeEEEEecCCCCEEEEeCCCCcEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEEcCCCeEEEEECCCCCccc
Q 017194 15 KATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWR 94 (375)
Q Consensus 15 ~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~ 94 (375)
++.|.++.|..+ .+.++.+..+|.|.+-|.++... .....-...|.+++|+||++.++..+..+++.+-+.. ..
T Consensus 68 d~~i~s~~fl~d-~~~i~v~~~~G~iilvd~et~~~-eivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~----f~ 141 (1265)
T KOG1920|consen 68 DDEIVSVQFLAD-TNSICVITALGDIILVDPETLEL-EIVGNVDNGISAASWSPDEELLALITGRQTLLFMTKD----FE 141 (1265)
T ss_pred CcceEEEEEecc-cceEEEEecCCcEEEEcccccce-eeeeeccCceEEEeecCCCcEEEEEeCCcEEEEEecc----cc
Confidence 368999999998 67788888889999998877653 2233346789999999999999999988887665432 12
Q ss_pred cccccc-----CCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCc-eeeeeEecCcccceeEEEEeeCCCcEEEEee--
Q 017194 95 PLESYN-----YNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQH-CLYKSLRAGHSSICSSVQFIPWKPWEVISGG-- 166 (375)
Q Consensus 95 ~~~~~~-----~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-- 166 (375)
++.... ...+....+-|-.....+ -|+ .|.....+.... +...... ..+.=+.+.|-.||+ ++++..
T Consensus 142 ~i~E~~L~~d~~~~sk~v~VGwGrkeTqf-rgs-~gr~~~~~~~~~ek~~~~~~--~~~~~~~IsWRgDg~-~fAVs~~~ 216 (1265)
T KOG1920|consen 142 PIAEKPLDADDERKSKFVNVGWGRKETQF-RGS-EGRQAARQKIEKEKALEQIE--QDDHKTSISWRGDGE-YFAVSFVE 216 (1265)
T ss_pred chhccccccccccccccceecccccceee-ecc-hhhhcccccccccccccchh--hccCCceEEEccCCc-EEEEEEEe
Confidence 222110 001222233332221111 111 111111111100 1111111 112225689999998 566632
Q ss_pred --cC-CeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEe---cCCcEEEEeCCCc
Q 017194 167 --LD-SKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAK---GDGVVDVINIESE 240 (375)
Q Consensus 167 --~d-~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~---~dg~i~i~d~~~~ 240 (375)
.+ ..|++||.+ |..-..-. . ....-.+++|-| .|.++++-. .|+.|.+|.-...
T Consensus 217 ~~~~~RkirV~drE-g~Lns~se-~------------~~~l~~~LsWkP------sgs~iA~iq~~~sd~~IvffErNGL 276 (1265)
T KOG1920|consen 217 SETGTRKIRVYDRE-GALNSTSE-P------------VEGLQHSLSWKP------SGSLIAAIQCKTSDSDIVFFERNGL 276 (1265)
T ss_pred ccCCceeEEEeccc-chhhcccC-c------------ccccccceeecC------CCCeEeeeeecCCCCcEEEEecCCc
Confidence 23 789999976 43322111 1 123457889988 688888764 4557888876642
Q ss_pred ceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEE---ecCCCeE
Q 017194 241 LNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLIS---GGNDKLV 317 (375)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s---~~~dg~i 317 (375)
+. ............++..++|+ .++..||. ......|
T Consensus 277 ~h-------------------------------------g~f~l~~p~de~~ve~L~Wn---s~sdiLAv~~~~~e~~~v 316 (1265)
T KOG1920|consen 277 RH-------------------------------------GEFVLPFPLDEKEVEELAWN---SNSDILAVVTSNLENSLV 316 (1265)
T ss_pred cc-------------------------------------cccccCCcccccchheeeec---CCCCceeeeecccccceE
Confidence 11 11111222333448899999 88888887 5555669
Q ss_pred EEEeCCCce
Q 017194 318 KVWDCSRFQ 326 (375)
Q Consensus 318 ~iwd~~~~~ 326 (375)
++|-..+..
T Consensus 317 ~lwt~~Nyh 325 (1265)
T KOG1920|consen 317 QLWTTGNYH 325 (1265)
T ss_pred EEEEecCeE
Confidence 999988864
No 309
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=99.04 E-value=1.5e-06 Score=69.11 Aligned_cols=210 Identities=12% Similarity=0.112 Sum_probs=130.0
Q ss_pred EEEEEEeCCC-CeEEEEcCCC-eEEEEECCCCCcccccccccCCCcceeEEEEcCCCCeEEEEe-----CCCcEEEEeCc
Q 017194 61 VTSLCFKSGN-EDIIYVSSGK-EVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACAD-----DGGDVKIIDIR 133 (375)
Q Consensus 61 v~~l~~~~~~-~~l~~~~~d~-~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-----~dg~i~iwd~~ 133 (375)
...++.+|.. ..++.+-.-| ...+||..+++....+..-.+ ..---.-.|++||++|++.- ..|.|-|||..
T Consensus 7 gH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~g-RHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~ 85 (305)
T PF07433_consen 7 GHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPG-RHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAA 85 (305)
T ss_pred ccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCC-CEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECc
Confidence 3467788844 4455555544 678999998876655543221 11112368999999999874 34789999998
Q ss_pred -CceeeeeEecCcccceeEEEEeeCCCcEEEEeec------------------CCeEEEeeCCCCCcceEEecCCCCCCC
Q 017194 134 -QHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGL------------------DSKLVMWDFSKGRPNKIVNFGLPENNG 194 (375)
Q Consensus 134 -~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~------------------d~~i~~wd~~~~~~~~~~~~~~~~~~~ 194 (375)
+-+.+..+. .|.-..-.+.+.|+++ .|+++.. +..+...|..+|+.+.+..+..
T Consensus 86 ~~~~ri~E~~-s~GIGPHel~l~pDG~-tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~----- 158 (305)
T PF07433_consen 86 RGYRRIGEFP-SHGIGPHELLLMPDGE-TLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPP----- 158 (305)
T ss_pred CCcEEEeEec-CCCcChhhEEEcCCCC-EEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCc-----
Confidence 567788888 7766677888999997 3554321 2345666777777777765431
Q ss_pred CCCcccCCCceeEEeecCCccccCCCCEEEEEecCCc-------EEEEeCCCcceeecccccCCCCCCceeeccccccee
Q 017194 195 NAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGV-------VDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDA 267 (375)
Q Consensus 195 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~-------i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~ 267 (375)
-.+...+..+++.+ +|..++..-..|. |-+++..........
T Consensus 159 ----~~~~lSiRHLa~~~------~G~V~~a~Q~qg~~~~~~PLva~~~~g~~~~~~~~--------------------- 207 (305)
T PF07433_consen 159 ----DLHQLSIRHLAVDG------DGTVAFAMQYQGDPGDAPPLVALHRRGGALRLLPA--------------------- 207 (305)
T ss_pred ----cccccceeeEEecC------CCcEEEEEecCCCCCccCCeEEEEcCCCcceeccC---------------------
Confidence 11456788999987 5655555433321 111111110000000
Q ss_pred eeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEec-CCCeEEEEeCCCce
Q 017194 268 EMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGG-NDKLVKVWDCSRFQ 326 (375)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~-~dg~i~iwd~~~~~ 326 (375)
.......-...+-+|+++ +++.++++.+ .-|.+.+||..++.
T Consensus 208 --------------p~~~~~~l~~Y~gSIa~~---~~g~~ia~tsPrGg~~~~~d~~tg~ 250 (305)
T PF07433_consen 208 --------------PEEQWRRLNGYIGSIAAD---RDGRLIAVTSPRGGRVAVWDAATGR 250 (305)
T ss_pred --------------ChHHHHhhCCceEEEEEe---CCCCEEEEECCCCCEEEEEECCCCC
Confidence 000112335789999999 8888776554 57889999999984
No 310
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.04 E-value=7.2e-08 Score=77.41 Aligned_cols=161 Identities=16% Similarity=0.080 Sum_probs=104.1
Q ss_pred CCCCCeeeecCCCceeEEEEecCCCCEEEEeCCCCcEEEEecccCceeeEeeecCccEEEEEEeCCCC-eEEEEcCCCeE
Q 017194 4 AEAKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNE-DIIYVSSGKEV 82 (375)
Q Consensus 4 ~~~~~~~l~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~-~l~~~~~d~~i 82 (375)
+.+....+.+|...|..++|+|.+..++..++.+.+|+|.|+++......+..+ ..+++++|.-+.. +|.+|-..|.|
T Consensus 182 ~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~V 260 (463)
T KOG1645|consen 182 DFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMV 260 (463)
T ss_pred CcchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEEeccCceE
Confidence 344555677888999999999995558889999999999999999988888877 8999999987654 56666678999
Q ss_pred EEEECCCCCcccccccccCCCcceeEEEEcC------CCCeEEEEeCCCcEEEEeCcC--ceeeeeEecCcccceeEEEE
Q 017194 83 KSFDVHMPASWRPLESYNYNKEEINQIVCNP------KSSFLACADDGGDVKIIDIRQ--HCLYKSLRAGHSSICSSVQF 154 (375)
Q Consensus 83 ~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~------~~~~l~~~~~dg~i~iwd~~~--~~~~~~~~~~~~~~v~~~~~ 154 (375)
.+||++..+.......-.....+|..++.-+ .+.+++....+ +..|++.- +.....+..+..+.+.++++
T Consensus 261 lvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~~p~vlele~pG~cismqy 338 (463)
T KOG1645|consen 261 LVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAECLPCVLELEPPGICISMQY 338 (463)
T ss_pred EEEEccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeehh--hhhhhhhccccCCCcccccCCCcceeeeee
Confidence 9999986543221111111133454444333 23344444332 55666542 22222222134567777888
Q ss_pred eeCCCcEEEEeec
Q 017194 155 IPWKPWEVISGGL 167 (375)
Q Consensus 155 ~~~~~~~l~~~~~ 167 (375)
++..+.++++.-.
T Consensus 339 ~~~snh~l~tyRs 351 (463)
T KOG1645|consen 339 HGVSNHLLLTYRS 351 (463)
T ss_pred cCccceEEEEecC
Confidence 7766645555433
No 311
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=99.02 E-value=1.1e-06 Score=75.75 Aligned_cols=193 Identities=9% Similarity=0.050 Sum_probs=116.9
Q ss_pred CCEEEEeCCCCcEEEEecccCceeeEeeecCc----------cEE-EEEEeCCCCeEEEEcCCCeEEEEECCCCCccccc
Q 017194 28 PGFVASSGEDGCICWFDLRSKDVQLVTDVGNG----------PVT-SLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPL 96 (375)
Q Consensus 28 ~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~----------~v~-~l~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~ 96 (375)
+..++.++.+|.+.-+|.++|+.+...+.... .+. .+.. .+..++.++.++.+..+|.++++..-..
T Consensus 69 ~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~ 146 (394)
T PRK11138 69 YNKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTV--AGGKVYIGSEKGQVYALNAEDGEVAWQT 146 (394)
T ss_pred CCEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEE--ECCEEEEEcCCCEEEEEECCCCCCcccc
Confidence 45677778889999999999998766543220 000 0111 3456777888999999999988754443
Q ss_pred ccccCCCcceeE-EEEcCCCCeEEEEeCCCcEEEEeCcCceeeeeEecCcccce-----eEEEEeeCCCcEEEEeecCCe
Q 017194 97 ESYNYNKEEINQ-IVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSIC-----SSVQFIPWKPWEVISGGLDSK 170 (375)
Q Consensus 97 ~~~~~~~~~v~~-~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v-----~~~~~~~~~~~~l~~~~~d~~ 170 (375)
.. ...+.+ ... .+..++++..++.+..+|.++++.+-.+. ...... .+.... ++ .++.++.+|.
T Consensus 147 ~~----~~~~~ssP~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~-~~~~~~~~~~~~sP~v~-~~--~v~~~~~~g~ 216 (394)
T PRK11138 147 KV----AGEALSRPVV--SDGLVLVHTSNGMLQALNESDGAVKWTVN-LDVPSLTLRGESAPATA-FG--GAIVGGDNGR 216 (394)
T ss_pred cC----CCceecCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeec-CCCCcccccCCCCCEEE-CC--EEEEEcCCCE
Confidence 32 112211 111 24467778889999999999999887775 221100 111111 22 4677788999
Q ss_pred EEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCcce
Q 017194 171 LVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELN 242 (375)
Q Consensus 171 i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~ 242 (375)
+..+|..+++.+.......+...... .....+..+|.. .+..+++++.+|.+..+|..+++.
T Consensus 217 v~a~d~~~G~~~W~~~~~~~~~~~~~------~~~~~~~~sP~v----~~~~vy~~~~~g~l~ald~~tG~~ 278 (394)
T PRK11138 217 VSAVLMEQGQLIWQQRISQPTGATEI------DRLVDVDTTPVV----VGGVVYALAYNGNLVALDLRSGQI 278 (394)
T ss_pred EEEEEccCChhhheeccccCCCccch------hcccccCCCcEE----ECCEEEEEEcCCeEEEEECCCCCE
Confidence 99999999998877654321100000 001111122210 255677777889999999998643
No 312
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=99.01 E-value=1.3e-08 Score=89.87 Aligned_cols=186 Identities=16% Similarity=0.164 Sum_probs=132.5
Q ss_pred CCeEEEEcCCCeEEEEECCCCCcccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCceeeeeEecCcccce
Q 017194 70 NEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSIC 149 (375)
Q Consensus 70 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v 149 (375)
+..++.|+-...+..+|+++.+..+.... . ...|.-++ .+++++.+|...|+|.+-|.++.+.+.++. .|++.+
T Consensus 147 ~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v-~--a~~v~imR--~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~-aHs~si 220 (1118)
T KOG1275|consen 147 PSTLIMGGLQEKLIHIDLNTEKETRTTNV-S--ASGVTIMR--YNNRNLFCGDTRGTVFLRDPNSFETIHTFD-AHSGSI 220 (1118)
T ss_pred Ccceeecchhhheeeeecccceeeeeeec-c--CCceEEEE--ecCcEEEeecccceEEeecCCcCceeeeee-ccccce
Confidence 34566666667788888886544332222 1 23355444 367899999999999999999999999999 999999
Q ss_pred eEEEEeeCCCcEEEEeec---------CCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCC
Q 017194 150 SSVQFIPWKPWEVISGGL---------DSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTN 220 (375)
Q Consensus 150 ~~~~~~~~~~~~l~~~~~---------d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 220 (375)
.++... |+ +|++++. |.-|++||++..+.+..+.+. ....-+.|.|. -.
T Consensus 221 SDfDv~--GN-lLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~--------------~~P~flrf~Ps-----l~ 278 (1118)
T KOG1275|consen 221 SDFDVQ--GN-LLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFP--------------YGPQFLRFHPS-----LT 278 (1118)
T ss_pred eeeecc--CC-eEEEeecccccccccccchhhhhhhhhhhccCCcccc--------------cCchhhhhccc-----cc
Confidence 877654 55 7888875 556899999988777666543 23355677774 46
Q ss_pred CEEEEEecCCcEEEEeCCCcceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEee
Q 017194 221 KICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSM 300 (375)
Q Consensus 221 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 300 (375)
..+++.+..|...+-|..+-..+ + .-+..+......+..+.+|
T Consensus 279 t~~~V~S~sGq~q~vd~~~lsNP---------~---------------------------~~~~~v~p~~s~i~~fDiS- 321 (1118)
T KOG1275|consen 279 TRLAVTSQSGQFQFVDTATLSNP---------P---------------------------AGVKMVNPNGSGISAFDIS- 321 (1118)
T ss_pred ceEEEEecccceeeccccccCCC---------c---------------------------cceeEEccCCCcceeEEec-
Confidence 78889999999999995432100 0 0011122224458899999
Q ss_pred cCCCCcEEEEecCCCeEEEEeC
Q 017194 301 FGERGKYLISGGNDKLVKVWDC 322 (375)
Q Consensus 301 ~~~~~~~l~s~~~dg~i~iwd~ 322 (375)
+++..||.|..+|.|.+|--
T Consensus 322 --sn~~alafgd~~g~v~~wa~ 341 (1118)
T KOG1275|consen 322 --SNGDALAFGDHEGHVNLWAD 341 (1118)
T ss_pred --CCCceEEEecccCcEeeecC
Confidence 99999999999999999983
No 313
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=99.00 E-value=2.8e-09 Score=83.54 Aligned_cols=149 Identities=13% Similarity=0.190 Sum_probs=110.9
Q ss_pred EEEcCCCeEEEEECCCCCcccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCc-----eeeeeEecCcccc
Q 017194 74 IYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQH-----CLYKSLRAGHSSI 148 (375)
Q Consensus 74 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-----~~~~~~~~~~~~~ 148 (375)
++.+.+..+-+-|++++-. +.+. ..+.|.++.|...++++..|+.+|.|..+|++.+ .+...+. |.+.
T Consensus 228 fs~G~sqqv~L~nvetg~~-qsf~----sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rly--h~Ss 300 (425)
T KOG2695|consen 228 FSVGLSQQVLLTNVETGHQ-QSFQ----SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLY--HDSS 300 (425)
T ss_pred ecccccceeEEEEeecccc-cccc----cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEE--cCcc
Confidence 4556677888889887643 2222 2678999999998999999999999999999854 4566666 8999
Q ss_pred eeEEEEee-CCCcEEEEeecCCeEEEeeCCCCCc---ceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEE
Q 017194 149 CSSVQFIP-WKPWEVISGGLDSKLVMWDFSKGRP---NKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICV 224 (375)
Q Consensus 149 v~~~~~~~-~~~~~l~~~~~d~~i~~wd~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~ 224 (375)
|+++.... +++ .|++.+.+|+|++||++.-++ +..++ +.|+..+..|... .+....++
T Consensus 301 vtslq~Lq~s~q-~LmaS~M~gkikLyD~R~~K~~~~V~qYe----------------GHvN~~a~l~~~v-~~eeg~I~ 362 (425)
T KOG2695|consen 301 VTSLQILQFSQQ-KLMASDMTGKIKLYDLRATKCKKSVMQYE----------------GHVNLSAYLPAHV-KEEEGSIF 362 (425)
T ss_pred hhhhhhhccccc-eEeeccCcCceeEeeehhhhcccceeeee----------------ccccccccccccc-ccccceEE
Confidence 99998877 555 788999999999999998776 55555 2334333333222 22567777
Q ss_pred EEecCCcEEEEeCCCcceeeccc
Q 017194 225 VAKGDGVVDVINIESELNISRSK 247 (375)
Q Consensus 225 ~~~~dg~i~i~d~~~~~~~~~~~ 247 (375)
+++.|...+||.++.+......+
T Consensus 363 s~GdDcytRiWsl~~ghLl~tip 385 (425)
T KOG2695|consen 363 SVGDDCYTRIWSLDSGHLLCTIP 385 (425)
T ss_pred EccCeeEEEEEecccCceeeccC
Confidence 89999999999999876555444
No 314
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=99.00 E-value=1.8e-07 Score=74.72 Aligned_cols=189 Identities=13% Similarity=0.090 Sum_probs=118.1
Q ss_pred CCEEEEeCCCCcEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEEcCCCeEEEEECCCCCccccc-ccccCCCcce
Q 017194 28 PGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPL-ESYNYNKEEI 106 (375)
Q Consensus 28 ~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~-~~~~~~~~~v 106 (375)
+..+++++.++.|..||..+|+.+..... ...+..... ..+..++.++.++.++.+|..+++..... ..........
T Consensus 36 ~~~v~~~~~~~~l~~~d~~tG~~~W~~~~-~~~~~~~~~-~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~ 113 (238)
T PF13360_consen 36 GGRVYVASGDGNLYALDAKTGKVLWRFDL-PGPISGAPV-VDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVR 113 (238)
T ss_dssp TTEEEEEETTSEEEEEETTTSEEEEEEEC-SSCGGSGEE-EETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB
T ss_pred CCEEEEEcCCCEEEEEECCCCCEEEEeec-cccccceee-ecccccccccceeeeEecccCCcceeeeeccccccccccc
Confidence 45677778899999999999998877765 222222122 23445666777889999999988765542 2110001111
Q ss_pred eEEEEcCCCCeEEEEeCCCcEEEEeCcCceeeeeEecCcccce----------eEEEEeeCCCcEEEEeecCCeEEEeeC
Q 017194 107 NQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSIC----------SSVQFIPWKPWEVISGGLDSKLVMWDF 176 (375)
Q Consensus 107 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v----------~~~~~~~~~~~~l~~~~~d~~i~~wd~ 176 (375)
.......++..++++..++.|..+|+++|+.+.... ...... ..-....++ .++.++.++.+..+|+
T Consensus 114 ~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~-~~~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~~g~~~~~d~ 190 (238)
T PF13360_consen 114 SSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYP-VGEPRGSSPISSFSDINGSPVISDG--RVYVSSGDGRVVAVDL 190 (238)
T ss_dssp --SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEE-SSTT-SS--EEEETTEEEEEECCTT--EEEEECCTSSEEEEET
T ss_pred cccCceEecCEEEEEeccCcEEEEecCCCcEEEEee-cCCCCCCcceeeecccccceEEECC--EEEEEcCCCeEEEEEC
Confidence 122222237788888889999999999999988877 433221 122222233 4666666775444499
Q ss_pred CCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCccee
Q 017194 177 SKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNI 243 (375)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~ 243 (375)
.+++.+..... .....+ ... ++..|++++.++.|..||+++++..
T Consensus 191 ~tg~~~w~~~~---------------~~~~~~-~~~------~~~~l~~~~~~~~l~~~d~~tG~~~ 235 (238)
T PF13360_consen 191 ATGEKLWSKPI---------------SGIYSL-PSV------DGGTLYVTSSDGRLYALDLKTGKVV 235 (238)
T ss_dssp TTTEEEEEECS---------------S-ECEC-EEC------CCTEEEEEETTTEEEEEETTTTEEE
T ss_pred CCCCEEEEecC---------------CCccCC-cee------eCCEEEEEeCCCEEEEEECCCCCEE
Confidence 99986643321 122221 122 5788888889999999999997543
No 315
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.98 E-value=2.5e-08 Score=88.08 Aligned_cols=184 Identities=15% Similarity=0.182 Sum_probs=138.9
Q ss_pred CCEEEEeCCCCcEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEEcCCCeEEEEECCCCCcccccccccCCCccee
Q 017194 28 PGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEIN 107 (375)
Q Consensus 28 ~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~ 107 (375)
+..++-|+-...+..+|+.+.+..+........|.-++. +++++.+|...|+|.+-|.++ .+.+.++..|.+.|.
T Consensus 147 ~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~--Nnr~lf~G~t~G~V~LrD~~s---~~~iht~~aHs~siS 221 (1118)
T KOG1275|consen 147 PSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRY--NNRNLFCGDTRGTVFLRDPNS---FETIHTFDAHSGSIS 221 (1118)
T ss_pred CcceeecchhhheeeeecccceeeeeeeccCCceEEEEe--cCcEEEeecccceEEeecCCc---Cceeeeeecccccee
Confidence 456777777778999999988887777665556666655 478899999999999999885 577788888999998
Q ss_pred EEEEcCCCCeEEEEeC---------CCcEEEEeCcCceeeeeEecCcccceeEEEEeeCCCcEEEEeecCCeEEEeeCCC
Q 017194 108 QIVCNPKSSFLACADD---------GGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSK 178 (375)
Q Consensus 108 ~~~~~~~~~~l~~~~~---------dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~ 178 (375)
++.. .|+.|++++. |..|+|||++..+.+..+. -+-++ .-+.|+|.-...+++++..|...+-|..+
T Consensus 222 DfDv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~-~~~~P-~flrf~Psl~t~~~V~S~sGq~q~vd~~~ 297 (1118)
T KOG1275|consen 222 DFDV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQ-FPYGP-QFLRFHPSLTTRLAVTSQSGQFQFVDTAT 297 (1118)
T ss_pred eeec--cCCeEEEeecccccccccccchhhhhhhhhhhccCCcc-cccCc-hhhhhcccccceEEEEecccceeeccccc
Confidence 7655 6778888763 5568999999887777666 34333 66788998766899999999999999432
Q ss_pred C-Cc-ceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeC
Q 017194 179 G-RP-NKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINI 237 (375)
Q Consensus 179 ~-~~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~ 237 (375)
- .+ ....... | ....+..+.+++ +++.++.|..+|.|.+|.-
T Consensus 298 lsNP~~~~~~v~-p----------~~s~i~~fDiSs------n~~alafgd~~g~v~~wa~ 341 (1118)
T KOG1275|consen 298 LSNPPAGVKMVN-P----------NGSGISAFDISS------NGDALAFGDHEGHVNLWAD 341 (1118)
T ss_pred cCCCccceeEEc-c----------CCCcceeEEecC------CCceEEEecccCcEeeecC
Confidence 1 22 1111111 0 234589999998 8999999999999999983
No 316
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.97 E-value=3e-09 Score=57.74 Aligned_cols=39 Identities=10% Similarity=0.118 Sum_probs=36.6
Q ss_pred CceeeEeeecCccEEEEEEeCCCCeEEEEcCCCeEEEEE
Q 017194 48 KDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFD 86 (375)
Q Consensus 48 ~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i~iwd 86 (375)
++++.++.+|...|++|+|+|++++|++++.|+.|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 356788999999999999999999999999999999997
No 317
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.96 E-value=5.5e-10 Score=98.06 Aligned_cols=220 Identities=14% Similarity=0.125 Sum_probs=158.0
Q ss_pred CCeeeecCCCceeEEEEecCCCCEEEEeCCCCcEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEEcCCC--eEEE
Q 017194 7 KPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGK--EVKS 84 (375)
Q Consensus 7 ~~~~l~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~--~i~i 84 (375)
..++|+.|+..-+|++|+-+ .+.|+.|+..|.|+++++.+|........|..+|+.+.=+.+|..+++.+.-. -..+
T Consensus 1093 ~w~~frd~~~~fTc~afs~~-~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaL 1171 (1516)
T KOG1832|consen 1093 SWRSFRDETALFTCIAFSGG-TNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSAL 1171 (1516)
T ss_pred cchhhhccccceeeEEeecC-CceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHHH
Confidence 45678889999999999998 78999999999999999999999999999999999999999999887766543 4679
Q ss_pred EECCCCCcccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCceeeeeEec---CcccceeEEEEeeCCCcE
Q 017194 85 FDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRA---GHSSICSSVQFIPWKPWE 161 (375)
Q Consensus 85 wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~ 161 (375)
|++.. .......+ ..-.++.|+...+.-+.|.......+||+.++..+.++-. +.+..=+...|+|+.. +
T Consensus 1172 W~~~s--~~~~~Hsf----~ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~-L 1244 (1516)
T KOG1832|consen 1172 WDASS--TGGPRHSF----DEDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDT-L 1244 (1516)
T ss_pred hcccc--ccCccccc----cccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcc-e
Confidence 99874 23444444 3456788887665556666667799999999887766321 1222336788999987 4
Q ss_pred EEEeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCcc
Q 017194 162 VISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESEL 241 (375)
Q Consensus 162 l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~ 241 (375)
++ .|| .+||++..+.++.+.-- ..--.=.|+| +|..++.-+ .|||+++.+
T Consensus 1245 Il---ndG--vLWDvR~~~aIh~FD~f--------------t~~~~G~FHP------~g~eVIINS-----EIwD~RTF~ 1294 (1516)
T KOG1832|consen 1245 IL---NDG--VLWDVRIPEAIHRFDQF--------------TDYGGGGFHP------SGNEVIINS-----EIWDMRTFK 1294 (1516)
T ss_pred Ee---eCc--eeeeeccHHHHhhhhhh--------------eecccccccC------CCceEEeec-----hhhhhHHHH
Confidence 43 345 48999988777776511 1112234677 688887754 479999865
Q ss_pred eeecccccCCCCCCceeeccccccee
Q 017194 242 NISRSKSTTKPLKGSQSTSKVNIRDA 267 (375)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~s~~g~~~~ 267 (375)
.....+. -....+.|+..|..+.
T Consensus 1295 lLh~VP~---Ldqc~VtFNstG~VmY 1317 (1516)
T KOG1832|consen 1295 LLHSVPS---LDQCAVTFNSTGDVMY 1317 (1516)
T ss_pred HHhcCcc---ccceEEEeccCccchh
Confidence 5443332 2334566777776654
No 318
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.95 E-value=1e-07 Score=83.24 Aligned_cols=188 Identities=13% Similarity=0.118 Sum_probs=131.0
Q ss_pred CCceeEEEEecCCCCEEEEeCCCCcEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEEcCCCeEEEEECCCCCccc
Q 017194 15 KATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWR 94 (375)
Q Consensus 15 ~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~ 94 (375)
.+.++|++++ ++.|+-|..+|.|++.+.+. .. .+...|... ..+|.++++|+.||++.|-.+.+++...
T Consensus 39 ~D~is~~av~---~~~~~~GtH~g~v~~~~~~~-~~-~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~ 107 (846)
T KOG2066|consen 39 NDAISCCAVH---DKFFALGTHRGAVYLTTCQG-NP-KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEIT 107 (846)
T ss_pred hhHHHHHHhh---cceeeeccccceEEEEecCC-cc-ccccccccc------ccCCceEEEecCCCcEEEeeccCCccce
Confidence 4678888886 57999999999999999763 33 333334433 6689999999999999999988765433
Q ss_pred ccccccCCCcceeEEEEcCC-----CCeEEEEeCCCcEEEEeCcC--ceeeeeEecCcccceeEEEEeeCCCcEEEEeec
Q 017194 95 PLESYNYNKEEINQIVCNPK-----SSFLACADDGGDVKIIDIRQ--HCLYKSLRAGHSSICSSVQFIPWKPWEVISGGL 167 (375)
Q Consensus 95 ~~~~~~~~~~~v~~~~~~~~-----~~~l~~~~~dg~i~iwd~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~ 167 (375)
.. .+ ..++.+++++|+ .+.+++|+..| +.++.-+- .+.-..+. .-.++|.++.|..+ ++|=++.
T Consensus 108 ~~-df---~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~-~~eG~I~~i~W~g~---lIAWand 178 (846)
T KOG2066|consen 108 QY-DF---KRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLS-EGEGPIHSIKWRGN---LIAWAND 178 (846)
T ss_pred eE-ec---CCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeee-cCccceEEEEecCc---EEEEecC
Confidence 22 23 578999999997 56799998888 77765331 11111344 56789999999754 6666666
Q ss_pred CCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCC
Q 017194 168 DSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIE 238 (375)
Q Consensus 168 d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~ 238 (375)
+| |++||+.+++.+..++.+.+. .........+.|.+ ...|+.|=.| +|++..++
T Consensus 179 ~G-v~vyd~~~~~~l~~i~~p~~~-------~R~e~fpphl~W~~-------~~~LVIGW~d-~v~i~~I~ 233 (846)
T KOG2066|consen 179 DG-VKVYDTPTRQRLTNIPPPSQS-------VRPELFPPHLHWQD-------EDRLVIGWGD-SVKICSIK 233 (846)
T ss_pred CC-cEEEeccccceeeccCCCCCC-------CCcccCCCceEecC-------CCeEEEecCC-eEEEEEEe
Confidence 65 899999998888877654211 11123345677765 5566665444 78888887
No 319
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.87 E-value=2.2e-07 Score=81.25 Aligned_cols=154 Identities=15% Similarity=0.160 Sum_probs=111.0
Q ss_pred CccEEEEEEeCCCCeEEEEcCCCeEEEEECCCCCcccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCcee
Q 017194 58 NGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCL 137 (375)
Q Consensus 58 ~~~v~~l~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 137 (375)
...+++++++ +++++.|+-+|.+++.+.... . .....|... ..+|.++++|+.||.|.|-.+-+.+.
T Consensus 39 ~D~is~~av~--~~~~~~GtH~g~v~~~~~~~~----~-~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~ 105 (846)
T KOG2066|consen 39 NDAISCCAVH--DKFFALGTHRGAVYLTTCQGN----P-KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDE 105 (846)
T ss_pred hhHHHHHHhh--cceeeeccccceEEEEecCCc----c-ccccccccc------ccCCceEEEecCCCcEEEeeccCCcc
Confidence 4566777776 578999999999999997632 1 221122222 56899999999999999999988888
Q ss_pred eeeEecCcccceeEEEEeeC----CCcEEEEeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCC
Q 017194 138 YKSLRAGHSSICSSVQFIPW----KPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDA 213 (375)
Q Consensus 138 ~~~~~~~~~~~v~~~~~~~~----~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 213 (375)
..++. ...++.+++++|+ ....+++|+..| +.++.-+-.......... ...++|.++.|
T Consensus 106 ~~~~d--f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~-----------~~eG~I~~i~W--- 168 (846)
T KOG2066|consen 106 ITQYD--FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLS-----------EGEGPIHSIKW--- 168 (846)
T ss_pred ceeEe--cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeee-----------cCccceEEEEe---
Confidence 77776 6679999999998 112699999988 777764322111111111 03589999999
Q ss_pred ccccCCCCEEEEEecCCcEEEEeCCCcceeeccc
Q 017194 214 DMLDKTNKICVVAKGDGVVDVINIESELNISRSK 247 (375)
Q Consensus 214 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 247 (375)
.|.++|-++.+| |++||+.+.+......
T Consensus 169 -----~g~lIAWand~G-v~vyd~~~~~~l~~i~ 196 (846)
T KOG2066|consen 169 -----RGNLIAWANDDG-VKVYDTPTRQRLTNIP 196 (846)
T ss_pred -----cCcEEEEecCCC-cEEEeccccceeeccC
Confidence 589999998886 8999999876554443
No 320
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.85 E-value=2.9e-06 Score=75.11 Aligned_cols=198 Identities=11% Similarity=0.109 Sum_probs=128.4
Q ss_pred ceeEEEEecCCCCEEEEeCCCCcEEEEecccCceeeEeeecCcc-EEEEEEeCCCCeEEEEcCCC-----eEEEEECCCC
Q 017194 17 TATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGP-VTSLCFKSGNEDIIYVSSGK-----EVKSFDVHMP 90 (375)
Q Consensus 17 ~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~-v~~l~~~~~~~~l~~~~~d~-----~i~iwd~~~~ 90 (375)
.|.| |++. +..+|.|+.+|.|.+.+- +-+.+..++++... |..+-...+..+|++.+.|+ .+++|+++.-
T Consensus 27 ~isc--~~s~-~~~vvigt~~G~V~~Ln~-s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~ 102 (933)
T KOG2114|consen 27 AISC--CSSS-TGSVVIGTADGRVVILNS-SFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKV 102 (933)
T ss_pred ceeE--EcCC-CceEEEeeccccEEEecc-cceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEeccccc
Confidence 4554 5565 778999999999888873 34445777777777 55555555557888877764 5899998753
Q ss_pred Cc---cccc---c--c--ccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCc--Cce-eeeeEecCcccceeEEEEeeC
Q 017194 91 AS---WRPL---E--S--YNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIR--QHC-LYKSLRAGHSSICSSVQFIPW 157 (375)
Q Consensus 91 ~~---~~~~---~--~--~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~--~~~-~~~~~~~~~~~~v~~~~~~~~ 157 (375)
.. ...+ . . .+....++.+++.+.+-+.+|+|-.+|.|..+.-+ ..+ ....+...-..+|+++++..+
T Consensus 103 ~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d 182 (933)
T KOG2114|consen 103 DKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSD 182 (933)
T ss_pred CCCCCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecC
Confidence 21 1112 1 1 11235678899999999999999999999988532 111 111222134579999999999
Q ss_pred CCcEEEEeecCCeEEEeeCCCCCcceE-EecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEe
Q 017194 158 KPWEVISGGLDSKLVMWDFSKGRPNKI-VNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVIN 236 (375)
Q Consensus 158 ~~~~l~~~~~d~~i~~wd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d 236 (375)
+...+++++ -..|.+|.+....+... +. . +...+++..+++. ...+++++.+ .+.+|+
T Consensus 183 ~~s~lFv~T-t~~V~~y~l~gr~p~~~~ld-~------------~G~~lnCss~~~~------t~qfIca~~e-~l~fY~ 241 (933)
T KOG2114|consen 183 GKSVLFVAT-TEQVMLYSLSGRTPSLKVLD-N------------NGISLNCSSFSDG------TYQFICAGSE-FLYFYD 241 (933)
T ss_pred CceeEEEEe-cceeEEEEecCCCcceeeec-c------------CCccceeeecCCC------CccEEEecCc-eEEEEc
Confidence 884334433 35799999884332222 32 2 3567888888872 3335555443 699999
Q ss_pred CCC
Q 017194 237 IES 239 (375)
Q Consensus 237 ~~~ 239 (375)
...
T Consensus 242 sd~ 244 (933)
T KOG2114|consen 242 SDG 244 (933)
T ss_pred CCC
Confidence 874
No 321
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=98.83 E-value=2e-05 Score=61.89 Aligned_cols=214 Identities=13% Similarity=0.103 Sum_probs=124.3
Q ss_pred eeeecCCCceeEEEEecCCCCEEEEeCCCCcEEEEecccCceeeEeeec-CccEEEEEEeCCCCeEEEEcCCCeEEEEEC
Q 017194 9 RRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVG-NGPVTSLCFKSGNEDIIYVSSGKEVKSFDV 87 (375)
Q Consensus 9 ~~l~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~-~~~v~~l~~~~~~~~l~~~~~d~~i~iwd~ 87 (375)
+.+.+-...+..++|.|+++.++++....+.|..++. +|+.++.+... .+..-.|++..++.++++--.++.+.++++
T Consensus 15 ~~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~ 93 (248)
T PF06977_consen 15 KPLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTI 93 (248)
T ss_dssp EE-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE
T ss_pred eECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEE
Confidence 3555666679999999986778888888999988886 47877777654 356788999888877777667899999998
Q ss_pred CCCCcc---cccc-----cccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcC---ceeeeeEe-------cCcccce
Q 017194 88 HMPASW---RPLE-----SYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQ---HCLYKSLR-------AGHSSIC 149 (375)
Q Consensus 88 ~~~~~~---~~~~-----~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~---~~~~~~~~-------~~~~~~v 149 (375)
...... ..+. ....++..+-.++|.+.++.|+++-+..-..++.+.. ...+.... ......+
T Consensus 94 ~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 173 (248)
T PF06977_consen 94 DDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDL 173 (248)
T ss_dssp ----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS--
T ss_pred eccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceeccc
Confidence 432211 1111 1113456789999999888888877776677776653 11111110 0233467
Q ss_pred eEEEEeeCCCcEEEEeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecC
Q 017194 150 SSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGD 229 (375)
Q Consensus 150 ~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~d 229 (375)
.+++++|....+++....+..|..+| .+|+.+..+.+.... .+....-...-.|++.+ +|++.+++ +-
T Consensus 174 S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~----~gl~~~~~QpEGIa~d~------~G~LYIvs-Ep 241 (248)
T PF06977_consen 174 SGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGF----HGLSKDIPQPEGIAFDP------DGNLYIVS-EP 241 (248)
T ss_dssp -EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTG----GG-SS---SEEEEEE-T------T--EEEEE-TT
T ss_pred cceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcc----cCcccccCCccEEEECC------CCCEEEEc-CC
Confidence 89999998876788888899999999 668887777755100 00000113567899988 67655554 55
Q ss_pred CcEEEE
Q 017194 230 GVVDVI 235 (375)
Q Consensus 230 g~i~i~ 235 (375)
+..++|
T Consensus 242 Nlfy~f 247 (248)
T PF06977_consen 242 NLFYRF 247 (248)
T ss_dssp TEEEEE
T ss_pred ceEEEe
Confidence 555544
No 322
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=98.78 E-value=5.8e-05 Score=62.29 Aligned_cols=298 Identities=10% Similarity=0.056 Sum_probs=131.8
Q ss_pred ecccCceeeEeeecCc-----cEEEEEEeCCCCeEEEEcC-C--CeEEEEECCCCCcccccccccCCCcceeEEEEcCCC
Q 017194 44 DLRSKDVQLVTDVGNG-----PVTSLCFKSGNEDIIYVSS-G--KEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKS 115 (375)
Q Consensus 44 ~~~~~~~~~~~~~~~~-----~v~~l~~~~~~~~l~~~~~-d--~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 115 (375)
|..+|..+..+..... ..+.=+|.++|+.|+.++. + ..+.+.|+.+++..+... .. ........++|++
T Consensus 16 D~~TG~~VtrLT~~~~~~h~~YF~~~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTd-g~--g~~~~g~~~s~~~ 92 (386)
T PF14583_consen 16 DPDTGHRVTRLTPPDGHSHRLYFYQNCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTD-GP--GDNTFGGFLSPDD 92 (386)
T ss_dssp -TTT--EEEE-S-TTS-EE---TTS--B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE----SS---B-TTT-EE-TTS
T ss_pred CCCCCceEEEecCCCCcccceeecCCCcCCCCCEEEEEeccCCCcceEEEEcccCEEEECcc-CC--CCCccceEEecCC
Confidence 5566766666654332 2223356788977766554 4 478888998765433322 21 1223356677888
Q ss_pred CeEEEEeCCCcEEEEeCcCceeeeeEecCcccceeEEEEeeCCCcEEEEeec-----------------------CCeEE
Q 017194 116 SFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGL-----------------------DSKLV 172 (375)
Q Consensus 116 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-----------------------d~~i~ 172 (375)
+.++-......|+-.|+++.+....+. .....+-...|..+.....+.+.. ...|.
T Consensus 93 ~~~~Yv~~~~~l~~vdL~T~e~~~vy~-~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~ 171 (386)
T PF14583_consen 93 RALYYVKNGRSLRRVDLDTLEERVVYE-VPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIF 171 (386)
T ss_dssp SEEEEEETTTEEEEEETTT--EEEEEE---TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEE
T ss_pred CeEEEEECCCeEEEEECCcCcEEEEEE-CCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEE
Confidence 887666566789999999887655555 455555556665332212333321 23566
Q ss_pred EeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEec---CC-cEEEEeCCC--cceeecc
Q 017194 173 MWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKG---DG-VVDVINIES--ELNISRS 246 (375)
Q Consensus 173 ~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~---dg-~i~i~d~~~--~~~~~~~ 246 (375)
--|+.+|+....+.. ..++..+.|+|. +..+|+-+-+ +. .-+||-+++ .......
T Consensus 172 ~idl~tG~~~~v~~~--------------~~wlgH~~fsP~-----dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~ 232 (386)
T PF14583_consen 172 TIDLKTGERKVVFED--------------TDWLGHVQFSPT-----DPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVH 232 (386)
T ss_dssp EEETTT--EEEEEEE--------------SS-EEEEEEETT-----EEEEEEEEE-S-TTTSS-SEEEEETTS---EESS
T ss_pred EEECCCCceeEEEec--------------CccccCcccCCC-----CCCEEEEeccCCcceeceEEEEEEcCCCcceeee
Confidence 667777776655552 478899999995 5555555442 11 125555443 2222221
Q ss_pred cccCCCCCCceeecccccceeeeeeeec-----------CCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEecCCC
Q 017194 247 KSTTKPLKGSQSTSKVNIRDAEMEILDQ-----------SGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDK 315 (375)
Q Consensus 247 ~~~~~~~~~~~~~s~~g~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~dg 315 (375)
.........-=-|.|||..+.+...... ..... +.+... .+....-.+ +||++++-=+.|.
T Consensus 233 ~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~-~~~~~~----p~~~H~~ss---~Dg~L~vGDG~d~ 304 (386)
T PF14583_consen 233 RRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGER-RRLMEM----PWCSHFMSS---PDGKLFVGDGGDA 304 (386)
T ss_dssp ---TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT--E-EEEEEE-----SEEEEEE----TTSSEEEEEE---
T ss_pred cCCCCcccccccccCCCCEEEEEeecCCCCceEEEeeCCCCCCc-eEEEeC----CceeeeEEc---CCCCEEEecCCCC
Confidence 1222222233358999998887432111 11111 111111 122334445 8888877533331
Q ss_pred ----------------eEEEEeCCCceeeeecchhhhhhhhccccc-ceeeeeecCCCCCcEEE-eeCCCeEEEEe
Q 017194 316 ----------------LVKVWDCSRFQGVQTSINNDLLIKNINLNK-KVNWLCTTPTESENLVV-CDTSKVVKVYS 373 (375)
Q Consensus 316 ----------------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~l~s-~~~dg~v~iw~ 373 (375)
-|++++++.+................++.. .=....|+| |+++++- +...|...||=
T Consensus 305 p~~v~~~~~~~~~~~p~i~~~~~~~~~~~~l~~h~~sw~v~~~~~q~~hPhp~FSP-Dgk~VlF~Sd~~G~~~vY~ 379 (386)
T PF14583_consen 305 PVDVADAGGYKIENDPWIYLFDVEAGRFRKLARHDTSWKVLDGDRQVTHPHPSFSP-DGKWVLFRSDMEGPPAVYL 379 (386)
T ss_dssp ----------------EEEEEETTTTEEEEEEE-------BTTBSSTT----EE-T-TSSEEEEEE-TTSS-EEEE
T ss_pred CccccccccceecCCcEEEEeccccCceeeeeeccCcceeecCCCccCCCCCccCC-CCCEEEEECCCCCCccEEE
Confidence 566778877643211111000111111111 124568999 8877655 45667666653
No 323
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=98.75 E-value=4.6e-05 Score=64.52 Aligned_cols=158 Identities=15% Similarity=0.128 Sum_probs=90.5
Q ss_pred ecCCCCEEEEe---------CCCCcEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEEcCCCeEEEEECCCCCccc
Q 017194 24 SRDRPGFVASS---------GEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWR 94 (375)
Q Consensus 24 ~~~~~~~l~s~---------~~d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~ 94 (375)
||| +++++.. +..+.+.|+|+++++....... ...+....|+|+|+.++... ++.|.+++..++...+
T Consensus 1 S~d-~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~-~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~ 77 (353)
T PF00930_consen 1 SPD-GKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPP-PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQ 77 (353)
T ss_dssp -TT-SSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-E-ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEE
T ss_pred CCC-CCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCC-ccccccceeecCCCeeEEEe-cCceEEEECCCCCeEE
Confidence 466 5665553 2245799999998765444333 67788999999999998876 6899999987653322
Q ss_pred cccccc-----CC---------CcceeEEEEcCCCCeEEEEeCC-Cc---------------------------------
Q 017194 95 PLESYN-----YN---------KEEINQIVCNPKSSFLACADDG-GD--------------------------------- 126 (375)
Q Consensus 95 ~~~~~~-----~~---------~~~v~~~~~~~~~~~l~~~~~d-g~--------------------------------- 126 (375)
....-. +- -+.-..+-|+||+++|+....| ..
T Consensus 78 lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~ 157 (353)
T PF00930_consen 78 LTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPR 157 (353)
T ss_dssp SES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---E
T ss_pred eccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcCCc
Confidence 211100 00 1123568899999998865321 11
Q ss_pred --EEEEeCcCceeeeeE-e---cCcccceeEEEEeeCCCcEEEEe--ecC---CeEEEeeCCCCCcceEE
Q 017194 127 --VKIIDIRQHCLYKSL-R---AGHSSICSSVQFIPWKPWEVISG--GLD---SKLVMWDFSKGRPNKIV 185 (375)
Q Consensus 127 --i~iwd~~~~~~~~~~-~---~~~~~~v~~~~~~~~~~~~l~~~--~~d---~~i~~wd~~~~~~~~~~ 185 (375)
+.++|+.+++....- . ..-...+..+.|.+++.. |+.. ..+ ..+.++|..+++.....
T Consensus 158 v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~-l~~~~~nR~q~~~~l~~~d~~tg~~~~~~ 226 (353)
T PF00930_consen 158 VSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKR-LWVQWLNRDQNRLDLVLCDASTGETRVVL 226 (353)
T ss_dssp EEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEE-EEEEEEETTSTEEEEEEEEECTTTCEEEE
T ss_pred eEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcE-EEEEEcccCCCEEEEEEEECCCCceeEEE
Confidence 333444444332110 0 023446788899999872 3332 322 24667788776654444
No 324
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.74 E-value=3.8e-06 Score=74.43 Aligned_cols=195 Identities=13% Similarity=0.178 Sum_probs=124.6
Q ss_pred EEeCCCCeEEEEcCCCeEEEEECCCCCcccccccccCCCcc-eeEEEEcCCCCeEEEEeCCC-----cEEEEeCcCc---
Q 017194 65 CFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEE-INQIVCNPKSSFLACADDGG-----DVKIIDIRQH--- 135 (375)
Q Consensus 65 ~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~l~~~~~dg-----~i~iwd~~~~--- 135 (375)
+|++.+..++.|+.+|.|.+.+-. .+.+..+..+... |..+-...+..+|++.++|+ .+++|+++..
T Consensus 30 c~~s~~~~vvigt~~G~V~~Ln~s----~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n 105 (933)
T KOG2114|consen 30 CCSSSTGSVVIGTADGRVVILNSS----FQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKN 105 (933)
T ss_pred EEcCCCceEEEeeccccEEEeccc----ceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCC
Confidence 467888899999999999888854 3444555555555 44444444446777776654 4899998732
Q ss_pred ---eeee--eEe---c-CcccceeEEEEeeCCCcEEEEeecCCeEEEeeCCC--CC-cceEEecCCCCCCCCCCcccCCC
Q 017194 136 ---CLYK--SLR---A-GHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSK--GR-PNKIVNFGLPENNGNAGQCYNPA 203 (375)
Q Consensus 136 ---~~~~--~~~---~-~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~ 203 (375)
.++. .+. . ....++.+++.+.+-. .+|+|-.+|.|.++.-+- .+ ....+... ...
T Consensus 106 ~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~-~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~------------~~~ 172 (933)
T KOG2114|consen 106 NSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLK-TIVCGFTNGLVICYKGDILRDRGSRQDYSHR------------GKE 172 (933)
T ss_pred CCcceeeeeeeeccCCCCCCCcceEEEEEcccc-EEEEEecCcEEEEEcCcchhccccceeeecc------------CCC
Confidence 2221 111 0 1345788999998877 799999999999985321 11 11111111 357
Q ss_pred ceeEEeecCCccccCCCCE-EEEEecCCcEEEEeCCCcceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEe
Q 017194 204 FVHAIAIPDADMLDKTNKI-CVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHL 282 (375)
Q Consensus 204 ~v~~~~~~~~~~~~~~~~~-l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~ 282 (375)
+|+.+++.. +++. +.+++. ..|.+|.+... . ..
T Consensus 173 pITgL~~~~------d~~s~lFv~Tt-~~V~~y~l~gr--------------------------------------~-p~ 206 (933)
T KOG2114|consen 173 PITGLALRS------DGKSVLFVATT-EQVMLYSLSGR--------------------------------------T-PS 206 (933)
T ss_pred CceeeEEec------CCceeEEEEec-ceeEEEEecCC--------------------------------------C-cc
Confidence 899999987 5665 344433 47899988842 1 22
Q ss_pred eeeecCCCccEEEEEEeecCCCCcEEEEecCCCeEEEEeCCCce
Q 017194 283 DYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQ 326 (375)
Q Consensus 283 ~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd~~~~~ 326 (375)
...+..|...++|..++ +....+++++. ..+.+|+.....
T Consensus 207 ~~~ld~~G~~lnCss~~---~~t~qfIca~~-e~l~fY~sd~~~ 246 (933)
T KOG2114|consen 207 LKVLDNNGISLNCSSFS---DGTYQFICAGS-EFLYFYDSDGRG 246 (933)
T ss_pred eeeeccCCccceeeecC---CCCccEEEecC-ceEEEEcCCCcc
Confidence 33567778889999998 33332444443 469999988763
No 325
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.72 E-value=1.4e-05 Score=69.91 Aligned_cols=240 Identities=14% Similarity=0.023 Sum_probs=135.6
Q ss_pred EEEeCCCCcEEEEecccCceeeEeeec-------------CccEE-------EEEE--------e-----CCCCeEEEEc
Q 017194 31 VASSGEDGCICWFDLRSKDVQLVTDVG-------------NGPVT-------SLCF--------K-----SGNEDIIYVS 77 (375)
Q Consensus 31 l~s~~~d~~i~iw~~~~~~~~~~~~~~-------------~~~v~-------~l~~--------~-----~~~~~l~~~~ 77 (375)
+.||+..|.++|+-+.+++.++.+..- +..|. .+.| | .||++|+.-.
T Consensus 69 f~SgG~sG~~~v~G~PSmr~l~~ipvf~~~~~~G~G~~~esk~~l~~~~~~~~~~~gD~HHp~~s~t~g~ydGr~~find 148 (635)
T PRK02888 69 FWSGGHSGEVRILGLPSMRELMRIPVFNRDSATGWGITNESKKVLGEGARGGKYLNGDTHHPHMSFTDGTYDGRYLFIND 148 (635)
T ss_pred EeeCCccceEEEEecCCcceEEEeeeecCCCCcccCCchhHHHHhhccccCCcccCCCcCCCcccccCCccceeEEEEec
Confidence 789999999999999988876665321 01111 0111 1 1566666544
Q ss_pred C-CCeEEEEECCCCCccccccccc---CC---------Cccee-----EEEEcCCCCeEEEEe-CCCcEEEEeCcCceee
Q 017194 78 S-GKEVKSFDVHMPASWRPLESYN---YN---------KEEIN-----QIVCNPKSSFLACAD-DGGDVKIIDIRQHCLY 138 (375)
Q Consensus 78 ~-d~~i~iwd~~~~~~~~~~~~~~---~~---------~~~v~-----~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~ 138 (375)
. ...|-..+++.-+..+.+..-. .| +..|. .+-+.|||+.+...+ ..+.+.+.|.++.+..
T Consensus 149 k~n~Rvari~l~~~~~~~i~~iPn~~~~Hg~~~~~~p~t~yv~~~~e~~~PlpnDGk~l~~~~ey~~~vSvID~etmeV~ 228 (635)
T PRK02888 149 KANTRVARIRLDVMKCDKITELPNVQGIHGLRPQKIPRTGYVFCNGEFRIPLPNDGKDLDDPKKYRSLFTAVDAETMEVA 228 (635)
T ss_pred CCCcceEEEECccEeeceeEeCCCccCccccCccccCCccEEEeCcccccccCCCCCEeecccceeEEEEEEECccceEE
Confidence 3 3345455554332222221110 11 11111 122344555443222 3456778888877776
Q ss_pred eeEecCcccceeEEEEeeCCCcEEEEee---------------------------------------cCCeEEEeeCCC-
Q 017194 139 KSLRAGHSSICSSVQFIPWKPWEVISGG---------------------------------------LDSKLVMWDFSK- 178 (375)
Q Consensus 139 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~---------------------------------------~d~~i~~wd~~~- 178 (375)
.++. -......++++|+|++.++++. .++.|.+.|.++
T Consensus 229 ~qV~--Vdgnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~~iea~vkdGK~~~V~gn~V~VID~~t~ 306 (635)
T PRK02888 229 WQVM--VDGNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIARIEEAVKAGKFKTIGGSKVPVVDGRKA 306 (635)
T ss_pred EEEE--eCCCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchHHHHHhhhCCCEEEECCCEEEEEECCcc
Confidence 6665 2335567788888885444431 123466666655
Q ss_pred ----CCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEec-CCcEEEEeCCCcceeecccccCCCC
Q 017194 179 ----GRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKG-DGVVDVINIESELNISRSKSTTKPL 253 (375)
Q Consensus 179 ----~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~ 253 (375)
.+.+..+.. +...+.++++| ||+++++++. ++.+.++|+.+.+....-...
T Consensus 307 ~~~~~~v~~yIPV--------------GKsPHGV~vSP------DGkylyVanklS~tVSVIDv~k~k~~~~~~~~---- 362 (635)
T PRK02888 307 ANAGSALTRYVPV--------------PKNPHGVNTSP------DGKYFIANGKLSPTVTVIDVRKLDDLFDGKIK---- 362 (635)
T ss_pred ccCCcceEEEEEC--------------CCCccceEECC------CCCEEEEeCCCCCcEEEEEChhhhhhhhccCC----
Confidence 233444443 36778899999 8998887764 889999999875432211100
Q ss_pred CCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEecCCCeEEEEeCCC
Q 017194 254 KGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSR 324 (375)
Q Consensus 254 ~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd~~~ 324 (375)
..-....+..- ...-...+|. ++|....|-.-|..|..||+..
T Consensus 363 ------------------------~~~~vvaevev-GlGPLHTaFD---g~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 363 ------------------------PRDAVVAEPEL-GLGPLHTAFD---GRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred ------------------------ccceEEEeecc-CCCcceEEEC---CCCCEEEeEeecceeEEEehHH
Confidence 00011122222 2233456788 8888888888899999999987
No 326
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.71 E-value=9.7e-06 Score=69.17 Aligned_cols=116 Identities=12% Similarity=0.088 Sum_probs=81.5
Q ss_pred cEEEEEEeC-CCCeEEEE----cCCC----eEEEEECCCCCccccccc-ccCCCcceeEEEEcCCCCeEEEEeCCCcEEE
Q 017194 60 PVTSLCFKS-GNEDIIYV----SSGK----EVKSFDVHMPASWRPLES-YNYNKEEINQIVCNPKSSFLACADDGGDVKI 129 (375)
Q Consensus 60 ~v~~l~~~~-~~~~l~~~----~~d~----~i~iwd~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i 129 (375)
...++.|+. +...+.+. +.+| .-++|++..++ .+.+.. .-..+..+.+++++|+...++.|+.||.|.+
T Consensus 207 dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~k-lqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSiiL 285 (545)
T PF11768_consen 207 DPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNK-LQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSIIL 285 (545)
T ss_pred CcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCc-eeEEEEEEEecCCcceEEecCcccceEEEEecCCeEEE
Confidence 345677775 33444443 2334 34667766433 222221 1134678999999999999999999999999
Q ss_pred EeCcCceeeeeEecCcccceeEEEEeeCCCcEEEEeecCCeEEEeeCCCCC
Q 017194 130 IDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGR 180 (375)
Q Consensus 130 wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~ 180 (375)
||...+... +. ...-.++.++|+|+|. ++++|+..|.+.+||+.-..
T Consensus 286 yD~~~~~t~--~~-ka~~~P~~iaWHp~ga-i~~V~s~qGelQ~FD~ALsp 332 (545)
T PF11768_consen 286 YDTTRGVTL--LA-KAEFIPTLIAWHPDGA-IFVVGSEQGELQCFDMALSP 332 (545)
T ss_pred EEcCCCeee--ee-eecccceEEEEcCCCc-EEEEEcCCceEEEEEeecCc
Confidence 998766333 22 2456678999999998 89999999999999987543
No 327
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.71 E-value=2.8e-08 Score=87.74 Aligned_cols=196 Identities=15% Similarity=0.173 Sum_probs=133.1
Q ss_pred cccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCceeeeeEecCcccceeEEEEeeCCCcEEEEeecCC-eEE
Q 017194 94 RPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDS-KLV 172 (375)
Q Consensus 94 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~-~i~ 172 (375)
+....+..|....+|++|+.+.+.|++|+..|.|+++++.+|....... .|.+.|+-+.-+.+|..+|.+++... -..
T Consensus 1092 r~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~n-cH~SavT~vePs~dgs~~Ltsss~S~Plsa 1170 (1516)
T KOG1832|consen 1092 RSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVN-CHQSAVTLVEPSVDGSTQLTSSSSSSPLSA 1170 (1516)
T ss_pred ccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCcccccccc-ccccccccccccCCcceeeeeccccCchHH
Confidence 4455566678899999999999999999999999999999999998898 99999999999999984344444333 467
Q ss_pred EeeCCC-CCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCcceeeccccc--
Q 017194 173 MWDFSK-GRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKST-- 249 (375)
Q Consensus 173 ~wd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-- 249 (375)
+|++.+ +.+.+.+. .-.++.|+. ....-+.|+......+||+.++.........
T Consensus 1171 LW~~~s~~~~~Hsf~-----------------ed~~vkFsn------~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~ 1227 (1516)
T KOG1832|consen 1171 LWDASSTGGPRHSFD-----------------EDKAVKFSN------SLQFRALGTEADDALLYDVQTCSPLQTYLTDTV 1227 (1516)
T ss_pred HhccccccCcccccc-----------------ccceeehhh------hHHHHHhcccccceEEEecccCcHHHHhcCcch
Confidence 999864 33444433 346777876 3445566666678999999997665543222
Q ss_pred -CCCCCCceeecccccceeeeee-eecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEecCCCeEEEEeCCCc
Q 017194 250 -TKPLKGSQSTSKVNIRDAEMEI-LDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRF 325 (375)
Q Consensus 250 -~~~~~~~~~~s~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd~~~~ 325 (375)
.+.......|+|+...+.-.|. |+.... +.++.+......+. =.|+ |.|..++.-++ |||+++.
T Consensus 1228 ~~~y~~n~a~FsP~D~LIlndGvLWDvR~~---~aIh~FD~ft~~~~-G~FH---P~g~eVIINSE-----IwD~RTF 1293 (1516)
T KOG1832|consen 1228 TSSYSNNLAHFSPCDTLILNDGVLWDVRIP---EAIHRFDQFTDYGG-GGFH---PSGNEVIINSE-----IWDMRTF 1293 (1516)
T ss_pred hhhhhccccccCCCcceEeeCceeeeeccH---HHHhhhhhheeccc-cccc---CCCceEEeech-----hhhhHHH
Confidence 2233456678888887764332 222222 22333332222222 2355 88887777654 8999887
No 328
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.70 E-value=6.2e-07 Score=79.15 Aligned_cols=159 Identities=12% Similarity=0.099 Sum_probs=104.1
Q ss_pred eeEEEEecCCCCEEEEeCCCCcEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEEcCCCeEEEEECCCCCcccccc
Q 017194 18 ATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLE 97 (375)
Q Consensus 18 i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~ 97 (375)
+++++|+|. .-.|+.|-.-|.+.+|...+.+.......|..+|..+.|+++|..++++..-|.+.+|....-...+...
T Consensus 62 atSLCWHpe-~~vLa~gwe~g~~~v~~~~~~e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~~g~~q~~~ 140 (1416)
T KOG3617|consen 62 ATSLCWHPE-EFVLAQGWEMGVSDVQKTNTTETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDVIGEIQTSN 140 (1416)
T ss_pred hhhhccChH-HHHHhhccccceeEEEecCCceeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEeeeccccccch
Confidence 567999998 6788899889999999998887766677899999999999999999999999999999887322222222
Q ss_pred ccc--C-CCcceeEEEEcCCCC------eEEEEeCCCcEE-EEeCcCceeeeeEecCcccceeEEEEeeCCCcEEEEeec
Q 017194 98 SYN--Y-NKEEINQIVCNPKSS------FLACADDGGDVK-IIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGL 167 (375)
Q Consensus 98 ~~~--~-~~~~v~~~~~~~~~~------~l~~~~~dg~i~-iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~ 167 (375)
.+. . ..-...+...++++. ..++.+++..+- .++.+....-+... |. =.|+|. .|+.++.
T Consensus 141 ~~~hel~~~ltl~cfRL~~~~Ee~~~laKaaVtgDe~alD~~fnwk~~~a~rs~~--ks-------gv~~g~-~F~~~~~ 210 (1416)
T KOG3617|consen 141 IMQHELNDQLTLWCFRLSYDREEKFKLAKAAVTGDESALDEPFNWKESLAERSDE--KS-------GVPKGT-EFLFAGK 210 (1416)
T ss_pred hhhhHhhceeeEEEEecCCChHHhhhhhhhhccCchhhhcccccCccchhhcccc--cc-------CCCCCc-EEEEEcC
Confidence 111 0 011234555566532 133444444443 44433221112221 21 135666 6888889
Q ss_pred CCeEEEeeCCCCCcceEEecC
Q 017194 168 DSKLVMWDFSKGRPNKIVNFG 188 (375)
Q Consensus 168 d~~i~~wd~~~~~~~~~~~~~ 188 (375)
+|+|+-.|- .++.....+.+
T Consensus 211 ~GtVyyvdq-~g~~~~V~k~d 230 (1416)
T KOG3617|consen 211 SGTVYYVDQ-NGRQRTVHKLD 230 (1416)
T ss_pred CceEEEEcC-CCcEEEEEEcc
Confidence 999988883 46666666644
No 329
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.68 E-value=7.6e-06 Score=71.53 Aligned_cols=184 Identities=13% Similarity=0.052 Sum_probs=118.4
Q ss_pred EecCCCCEEE-EeCCCCcEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEEcCCC----eEEEEECCCCCcccccc
Q 017194 23 ASRDRPGFVA-SSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGK----EVKSFDVHMPASWRPLE 97 (375)
Q Consensus 23 ~~~~~~~~l~-s~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~----~i~iwd~~~~~~~~~~~ 97 (375)
+.|| |+.+. +.-..+.+.+.|.++.+...++.... ....+.++|+|+++++.+.+. ++..-+..+.. .+.
T Consensus 200 lpnD-Gk~l~~~~ey~~~vSvID~etmeV~~qV~Vdg-npd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d---~~v 274 (635)
T PRK02888 200 LPND-GKDLDDPKKYRSLFTAVDAETMEVAWQVMVDG-NLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERD---WVV 274 (635)
T ss_pred cCCC-CCEeecccceeEEEEEEECccceEEEEEEeCC-CcccceECCCCCEEEEeccCcccCcceeeeccccCc---eEE
Confidence 3445 44443 22334677788888877766666533 446788999999988886432 33333322110 000
Q ss_pred cccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcC-----ceeeeeEecCcccceeEEEEeeCCCcEEEEeecCCeEE
Q 017194 98 SYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQ-----HCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLV 172 (375)
Q Consensus 98 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~-----~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~ 172 (375)
.+. ...+ -++.++|++...+ ++.|.+.|..+ .+.+..+. -......+.++|||+++++++..+.+|.
T Consensus 275 vfn--i~~i--ea~vkdGK~~~V~--gn~V~VID~~t~~~~~~~v~~yIP--VGKsPHGV~vSPDGkylyVanklS~tVS 346 (635)
T PRK02888 275 VFN--IARI--EEAVKAGKFKTIG--GSKVPVVDGRKAANAGSALTRYVP--VPKNPHGVNTSPDGKYFIANGKLSPTVT 346 (635)
T ss_pred EEc--hHHH--HHhhhCCCEEEEC--CCEEEEEECCccccCCcceEEEEE--CCCCccceEECCCCCEEEEeCCCCCcEE
Confidence 000 0001 1334577776653 57899999988 45555565 4567789999999998778888899999
Q ss_pred EeeCCCCCc------------ceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCC
Q 017194 173 MWDFSKGRP------------NKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIES 239 (375)
Q Consensus 173 ~wd~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 239 (375)
+.|+.+.+. ..+++.+ ......+|.+ +|....+-.-|..|..||+..
T Consensus 347 VIDv~k~k~~~~~~~~~~~~vvaevevG--------------lGPLHTaFDg------~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 347 VIDVRKLDDLFDGKIKPRDAVVAEPELG--------------LGPLHTAFDG------RGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred EEEChhhhhhhhccCCccceEEEeeccC--------------CCcceEEECC------CCCEEEeEeecceeEEEehHH
Confidence 999987653 2333322 2334567776 788888888999999999986
No 330
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.67 E-value=2.1e-08 Score=85.29 Aligned_cols=208 Identities=16% Similarity=0.231 Sum_probs=131.8
Q ss_pred CCceeEEEEecCCC-CEEEEeCCCCcEEEEecccCce--eeEeeecCccEEEEEEeCC-CCeEEEEcC----CCeEEEEE
Q 017194 15 KATATCCIASRDRP-GFVASSGEDGCICWFDLRSKDV--QLVTDVGNGPVTSLCFKSG-NEDIIYVSS----GKEVKSFD 86 (375)
Q Consensus 15 ~~~i~~~~~~~~~~-~~l~s~~~d~~i~iw~~~~~~~--~~~~~~~~~~v~~l~~~~~-~~~l~~~~~----d~~i~iwd 86 (375)
...+.|++++.+.. ..++.|..+|.|.+-......- ......+..+.++++|++- .+.||+|-. |..+.|||
T Consensus 56 tqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwd 135 (783)
T KOG1008|consen 56 TQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWD 135 (783)
T ss_pred CCCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCcccee
Confidence 34577888766533 5788899999999988764332 3345567889999999874 455665532 45899999
Q ss_pred CCCCCc-cccccccc-CCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCcee-eeeEecCcccceeEEEEeeCCCcEEE
Q 017194 87 VHMPAS-WRPLESYN-YNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCL-YKSLRAGHSSICSSVQFIPWKPWEVI 163 (375)
Q Consensus 87 ~~~~~~-~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~l~ 163 (375)
+.+.-. ...-..+. +......+++|..+.+++.+|.....+.++|++.... ...+ .+..+..+...|-...+++
T Consensus 136 i~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~sv---nTk~vqG~tVdp~~~nY~c 212 (783)
T KOG1008|consen 136 INSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSV---NTKYVQGITVDPFSPNYFC 212 (783)
T ss_pred cccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhh---hhhhcccceecCCCCCcee
Confidence 986411 00000111 1234566889998889999999988999999984322 2222 2446777888884443454
Q ss_pred EeecCCeEEEee-CCCCC-cceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCC
Q 017194 164 SGGLDSKLVMWD-FSKGR-PNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIES 239 (375)
Q Consensus 164 ~~~~d~~i~~wd-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 239 (375)
+ ..||.|.+|| .++-+ ++..+... + . -.+..+..++|+|. ..|.+.+..-..++|++||+..
T Consensus 213 s-~~dg~iAiwD~~rnienpl~~i~~~-~------N--~~~~~l~~~aycPt----rtglla~l~RdS~tIrlydi~~ 276 (783)
T KOG1008|consen 213 S-NSDGDIAIWDTYRNIENPLQIILRN-E------N--KKPKQLFALAYCPT----RTGLLAVLSRDSITIRLYDICV 276 (783)
T ss_pred c-cccCceeeccchhhhccHHHHHhhC-C------C--CcccceeeEEeccC----CcchhhhhccCcceEEEecccc
Confidence 4 4599999999 43322 22222211 0 0 02346889999995 2344444444568999999874
No 331
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.64 E-value=2.4e-08 Score=84.86 Aligned_cols=203 Identities=17% Similarity=0.278 Sum_probs=132.7
Q ss_pred cceeEEEEcCC--CCeEEEEeCCCcEEEEeCcCceee-eeEecCcccceeEEEEeeCCCcEEEEee----cCCeEEEeeC
Q 017194 104 EEINQIVCNPK--SSFLACADDGGDVKIIDIRQHCLY-KSLRAGHSSICSSVQFIPWKPWEVISGG----LDSKLVMWDF 176 (375)
Q Consensus 104 ~~v~~~~~~~~--~~~l~~~~~dg~i~iwd~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~l~~~~----~d~~i~~wd~ 176 (375)
..+.|+++..+ ...+++|..+|.|.+-.++...-- ..+..++..++++++|++-+...||.|- .|..+.+||+
T Consensus 57 qy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi 136 (783)
T KOG1008|consen 57 QYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDI 136 (783)
T ss_pred CCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceec
Confidence 34556665543 346888999999999888754322 2333378889999999997654666663 3567999999
Q ss_pred CCC--CcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCcceeecccccCCCCC
Q 017194 177 SKG--RPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLK 254 (375)
Q Consensus 177 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~ 254 (375)
.++ .+.....+.. . ......+++|.. +.+++.+|.....++++|++...
T Consensus 137 ~s~ltvPke~~~fs~-------~---~l~gqns~cwlr------d~klvlaGm~sr~~~ifdlRqs~------------- 187 (783)
T KOG1008|consen 137 NSLLTVPKESPLFSS-------S---TLDGQNSVCWLR------DTKLVLAGMTSRSVHIFDLRQSL------------- 187 (783)
T ss_pred ccccCCCcccccccc-------c---cccCcccccccc------Ccchhhcccccchhhhhhhhhhh-------------
Confidence 876 3333222220 0 123345677765 78999999999999999998310
Q ss_pred CceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEecCCCeEEEEe-CCCceeeeecch
Q 017194 255 GSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWD-CSRFQGVQTSIN 333 (375)
Q Consensus 255 ~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd-~~~~~~~~~~~~ 333 (375)
.....-.+..+..+.++|+ .+.|+++-. ||.|.+|| ..+.+
T Consensus 188 ----------------------------~~~~svnTk~vqG~tVdp~--~~nY~cs~~-dg~iAiwD~~rnie------- 229 (783)
T KOG1008|consen 188 ----------------------------DSVSSVNTKYVQGITVDPF--SPNYFCSNS-DGDIAIWDTYRNIE------- 229 (783)
T ss_pred ----------------------------hhhhhhhhhhcccceecCC--CCCceeccc-cCceeeccchhhhc-------
Confidence 0011111345677778843 556887766 89999999 44432
Q ss_pred hhhhhhhcccc----cceeeeeecCCCCCcEEEeeCC-CeEEEEec
Q 017194 334 NDLLIKNINLN----KKVNWLCTTPTESENLVVCDTS-KVVKVYSI 374 (375)
Q Consensus 334 ~~~~~~~~~~~----~~v~~~~~~~~~~~~l~s~~~d-g~v~iw~~ 374 (375)
.++......+ ..+..++|.|.....+++...| ++|+++++
T Consensus 230 -npl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi 274 (783)
T KOG1008|consen 230 -NPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDI 274 (783)
T ss_pred -cHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEecc
Confidence 3333333322 3589999999666678887755 78888876
No 332
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.62 E-value=2.9e-05 Score=71.74 Aligned_cols=243 Identities=12% Similarity=0.112 Sum_probs=139.3
Q ss_pred CccEEEEEEeCCCCeEEEEcCCCeEEEEECCCCCcccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCcee
Q 017194 58 NGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCL 137 (375)
Q Consensus 58 ~~~v~~l~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 137 (375)
...|.++.|..+.+.++.+...|.|.+-|.++.. ...+... ...|.+++|+||++.++..+..+++.+.+ .+..+
T Consensus 68 d~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~-~eivg~v---d~GI~aaswS~Dee~l~liT~~~tll~mT-~~f~~ 142 (1265)
T KOG1920|consen 68 DDEIVSVQFLADTNSICVITALGDIILVDPETLE-LEIVGNV---DNGISAASWSPDEELLALITGRQTLLFMT-KDFEP 142 (1265)
T ss_pred CcceEEEEEecccceEEEEecCCcEEEEcccccc-eeeeeec---cCceEEEeecCCCcEEEEEeCCcEEEEEe-ccccc
Confidence 3689999999999999999999999999887643 2333333 67899999999999999998877776654 23333
Q ss_pred eeeEecCcccceeEEEEeeCCCcEEEEeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCcccc
Q 017194 138 YKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLD 217 (375)
Q Consensus 138 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 217 (375)
+..-. - ...-.+.+ .++.++....=.-+.-..|+....-.... + .. .....-...-++|.|--
T Consensus 143 i~E~~-L------~~d~~~~s--k~v~VGwGrkeTqfrgs~gr~~~~~~~~~-e-k~-~~~~~~~~~~~~IsWRg----- 205 (1265)
T KOG1920|consen 143 IAEKP-L------DADDERKS--KFVNVGWGRKETQFRGSEGRQAARQKIEK-E-KA-LEQIEQDDHKTSISWRG----- 205 (1265)
T ss_pred hhccc-c------cccccccc--ccceecccccceeeecchhhhcccccccc-c-cc-ccchhhccCCceEEEcc-----
Confidence 22211 1 11111222 13333332211112211111110000000 0 00 00000012335678876
Q ss_pred CCCCEEEEEe-----cCCcEEEEeCCCcceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCcc
Q 017194 218 KTNKICVVAK-----GDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAA 292 (375)
Q Consensus 218 ~~~~~l~~~~-----~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (375)
||.++++.. ....|++||... .... .-......
T Consensus 206 -Dg~~fAVs~~~~~~~~RkirV~drEg-~Lns----------------------------------------~se~~~~l 243 (1265)
T KOG1920|consen 206 -DGEYFAVSFVESETGTRKIRVYDREG-ALNS----------------------------------------TSEPVEGL 243 (1265)
T ss_pred -CCcEEEEEEEeccCCceeEEEecccc-hhhc----------------------------------------ccCccccc
Confidence 899999843 337899999882 1110 00011222
Q ss_pred EEEEEEeecCCCCcEEEEec---CCCeEEEEeCCCceeeeecchhhhhhhhcccccceeeeeecCCCCCcEEE---eeCC
Q 017194 293 ASCVAFSMFGERGKYLISGG---NDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVV---CDTS 366 (375)
Q Consensus 293 v~~~~~s~~~~~~~~l~s~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s---~~~d 366 (375)
-.+++|- |.|..+++-. .|+.|.+|.-+.-.. ++...........+..++|+. ++..|+. ....
T Consensus 244 ~~~LsWk---Psgs~iA~iq~~~sd~~IvffErNGL~h------g~f~l~~p~de~~ve~L~Wns-~sdiLAv~~~~~e~ 313 (1265)
T KOG1920|consen 244 QHSLSWK---PSGSLIAAIQCKTSDSDIVFFERNGLRH------GEFVLPFPLDEKEVEELAWNS-NSDILAVVTSNLEN 313 (1265)
T ss_pred ccceeec---CCCCeEeeeeecCCCCcEEEEecCCccc------cccccCCcccccchheeeecC-CCCceeeeeccccc
Confidence 3567888 8888888753 456798998655321 123223333444599999999 8888888 4555
Q ss_pred CeEEEEec
Q 017194 367 KVVKVYSI 374 (375)
Q Consensus 367 g~v~iw~~ 374 (375)
..|++|-+
T Consensus 314 ~~v~lwt~ 321 (1265)
T KOG1920|consen 314 SLVQLWTT 321 (1265)
T ss_pred ceEEEEEe
Confidence 66999975
No 333
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.58 E-value=7.8e-05 Score=66.01 Aligned_cols=206 Identities=12% Similarity=0.075 Sum_probs=119.2
Q ss_pred CEEEEeCCCCcEEEEecccCceeeEeeecCc------cEE--EEEEeCCCCeEEEEcCCCeEEEEECCCCCccccccccc
Q 017194 29 GFVASSGEDGCICWFDLRSKDVQLVTDVGNG------PVT--SLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYN 100 (375)
Q Consensus 29 ~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~------~v~--~l~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~ 100 (375)
..++.++.++.|.-.|..+|+.+...+.... .+. .+... ++..++.++.++.|+-+|.++++..-......
T Consensus 62 g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~-~~~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~ 140 (488)
T cd00216 62 GDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYW-DPRKVFFGTFDGRLVALDAETGKQVWKFGNND 140 (488)
T ss_pred CEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEc-cCCeEEEecCCCeEEEEECCCCCEeeeecCCC
Confidence 4566677789999999999998766653322 010 01111 22577888889999999999887654433211
Q ss_pred C--CCccee-EEEEcCCCCeEEEEe---------CCCcEEEEeCcCceeeeeEecCccc-------------------ce
Q 017194 101 Y--NKEEIN-QIVCNPKSSFLACAD---------DGGDVKIIDIRQHCLYKSLRAGHSS-------------------IC 149 (375)
Q Consensus 101 ~--~~~~v~-~~~~~~~~~~l~~~~---------~dg~i~iwd~~~~~~~~~~~~~~~~-------------------~v 149 (375)
. ....+. ...+. +..++.++ .++.+..+|..+++.+-.+...... .+
T Consensus 141 ~~~~~~~i~ssP~v~--~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~v 218 (488)
T cd00216 141 QVPPGYTMTGAPTIV--KKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTS 218 (488)
T ss_pred CcCcceEecCCCEEE--CCEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCCc
Confidence 0 000011 11111 23555554 3678999999999988776511110 01
Q ss_pred -eEEEEeeCCCcEEEEeecCC------------------eEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEee
Q 017194 150 -SSVQFIPWKPWEVISGGLDS------------------KLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAI 210 (375)
Q Consensus 150 -~~~~~~~~~~~~l~~~~~d~------------------~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 210 (375)
...++.+.+. +++.++.++ .|.-+|..+++....++...++.... ....+..+..+.
T Consensus 219 w~~pa~d~~~g-~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~--~~~s~p~~~~~~- 294 (488)
T cd00216 219 WASPTYDPKTN-LVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDY--DGPNQPSLADIK- 294 (488)
T ss_pred cCCeeEeCCCC-EEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCccc--ccCCCCeEEecc-
Confidence 1234444445 577776554 79999999999998876442110000 000000111111
Q ss_pred cCCccccCCCC---EEEEEecCCcEEEEeCCCcceeeccc
Q 017194 211 PDADMLDKTNK---ICVVAKGDGVVDVINIESELNISRSK 247 (375)
Q Consensus 211 ~~~~~~~~~~~---~l~~~~~dg~i~i~d~~~~~~~~~~~ 247 (375)
.. ++. .+++++.+|.+..+|.++++......
T Consensus 295 -~~-----~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~ 328 (488)
T cd00216 295 -PK-----DGKPVPAIVHAPKNGFFYVLDRTTGKLISARP 328 (488)
T ss_pred -cc-----CCCeeEEEEEECCCceEEEEECCCCcEeeEeE
Confidence 00 233 67888899999999999998776543
No 334
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=98.58 E-value=3.6e-05 Score=66.18 Aligned_cols=148 Identities=10% Similarity=0.083 Sum_probs=84.5
Q ss_pred EeeecCccEEEEEEeCCCCeEEEEcCCCeEEEEECCCCCcccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeC
Q 017194 53 VTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDI 132 (375)
Q Consensus 53 ~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~ 132 (375)
.+.........+.++|+|++++.++ +|.-.++..... +. .. .+.-..++|.+.+ .+|+-..++.|.++.-
T Consensus 27 ~lg~~~~~p~~ls~npngr~v~V~g-~geY~iyt~~~~---r~-k~----~G~g~~~vw~~~n-~yAv~~~~~~I~I~kn 96 (443)
T PF04053_consen 27 ELGSCEIYPQSLSHNPNGRFVLVCG-DGEYEIYTALAW---RN-KA----FGSGLSFVWSSRN-RYAVLESSSTIKIYKN 96 (443)
T ss_dssp EEEE-SS--SEEEE-TTSSEEEEEE-TTEEEEEETTTT---EE-EE----EEE-SEEEE-TSS-EEEEE-TTS-EEEEET
T ss_pred cCCCCCcCCeeEEECCCCCEEEEEc-CCEEEEEEccCC---cc-cc----cCceeEEEEecCc-cEEEEECCCeEEEEEc
Confidence 3334456688999999999888844 788888883321 11 11 3456778899855 5677767888999643
Q ss_pred cCceeeeeEecCcccceeEEEEeeCCCcEEEEeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecC
Q 017194 133 RQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPD 212 (375)
Q Consensus 133 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 212 (375)
-+.+....+. ....+..|-. |. +|...+. +.|.+||+.+++.+.++... .|..+.|++
T Consensus 97 ~~~~~~k~i~--~~~~~~~If~---G~-LL~~~~~-~~i~~yDw~~~~~i~~i~v~---------------~vk~V~Ws~ 154 (443)
T PF04053_consen 97 FKNEVVKSIK--LPFSVEKIFG---GN-LLGVKSS-DFICFYDWETGKLIRRIDVS---------------AVKYVIWSD 154 (443)
T ss_dssp TEE-TT-------SS-EEEEE----SS-SEEEEET-TEEEEE-TTT--EEEEESS----------------E-EEEEE-T
T ss_pred CccccceEEc--CCcccceEEc---Cc-EEEEECC-CCEEEEEhhHcceeeEEecC---------------CCcEEEEEC
Confidence 2333333444 2223444433 65 5555554 48999999999999999743 489999998
Q ss_pred CccccCCCCEEEEEecCCcEEEEeCCC
Q 017194 213 ADMLDKTNKICVVAKGDGVVDVINIES 239 (375)
Q Consensus 213 ~~~~~~~~~~l~~~~~dg~i~i~d~~~ 239 (375)
++.+++..+.+ .+.+++...
T Consensus 155 ------~g~~val~t~~-~i~il~~~~ 174 (443)
T PF04053_consen 155 ------DGELVALVTKD-SIYILKYNL 174 (443)
T ss_dssp ------TSSEEEEE-S--SEEEEEE-H
T ss_pred ------CCCEEEEEeCC-eEEEEEecc
Confidence 78999888766 778877653
No 335
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.56 E-value=5.1e-05 Score=66.10 Aligned_cols=152 Identities=9% Similarity=0.119 Sum_probs=101.9
Q ss_pred EEecCCCCEEEEeCCCCcEEEEecccCceeeEee-ecCccEEEEEEeCCCCeEEEEcCCCeEEEEECCCCCcccccc---
Q 017194 22 IASRDRPGFVASSGEDGCICWFDLRSKDVQLVTD-VGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLE--- 97 (375)
Q Consensus 22 ~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~-~~~~~v~~l~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~--- 97 (375)
++... +++++.|+.-|.+.+|+-..++....-. +....+..+..+++..++|+|+..|.|.++-+..........
T Consensus 40 c~dst-~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~~~t~ 118 (726)
T KOG3621|consen 40 CVDAT-EEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDLDYVTP 118 (726)
T ss_pred EeecC-CceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCcceeecc
Confidence 44444 7899999999999999987776543332 234556667788888888888889999999887632221111
Q ss_pred cccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCc----eeeeeEecCcccceeEEEEeeCCCcEEEEeecCCeEEE
Q 017194 98 SYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQH----CLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVM 173 (375)
Q Consensus 98 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~----~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~ 173 (375)
.-..|...|++++|++++..+++|...|.|..-.+... ...+.+. ...+.|-.+.+... +|+.++.- ...+
T Consensus 119 ~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il-~~ds~IVQlD~~q~---~LLVStl~-r~~L 193 (726)
T KOG3621|consen 119 CDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEIL-SEDSEIVQLDYLQS---YLLVSTLT-RCIL 193 (726)
T ss_pred ccccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceee-ccCcceEEeecccc---eehHhhhh-hhhe
Confidence 12236789999999999999999999999998888762 1122222 34566777766543 34433332 2345
Q ss_pred eeCCCC
Q 017194 174 WDFSKG 179 (375)
Q Consensus 174 wd~~~~ 179 (375)
++++.+
T Consensus 194 c~tE~e 199 (726)
T KOG3621|consen 194 CQTEAE 199 (726)
T ss_pred eecchh
Confidence 555543
No 336
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=98.56 E-value=0.0001 Score=63.47 Aligned_cols=149 Identities=13% Similarity=0.111 Sum_probs=83.0
Q ss_pred eeeecCCCceeEEEEecCCCCEEEEeCCCCcEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEEcCCCeEEEEECC
Q 017194 9 RRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVH 88 (375)
Q Consensus 9 ~~l~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i~iwd~~ 88 (375)
+.+....-....+.++|+ +++++.++ ||...|+......... .+.-....|.++++ +|+-...++|.++.--
T Consensus 26 k~lg~~~~~p~~ls~npn-gr~v~V~g-~geY~iyt~~~~r~k~-----~G~g~~~vw~~~n~-yAv~~~~~~I~I~kn~ 97 (443)
T PF04053_consen 26 KELGSCEIYPQSLSHNPN-GRFVLVCG-DGEYEIYTALAWRNKA-----FGSGLSFVWSSRNR-YAVLESSSTIKIYKNF 97 (443)
T ss_dssp EEEEE-SS--SEEEE-TT-SSEEEEEE-TTEEEEEETTTTEEEE-----EEE-SEEEE-TSSE-EEEE-TTS-EEEEETT
T ss_pred ccCCCCCcCCeeEEECCC-CCEEEEEc-CCEEEEEEccCCcccc-----cCceeEEEEecCcc-EEEEECCCeEEEEEcC
Confidence 344445556788999998 88888754 6788888743333221 23445678988554 6666668889996322
Q ss_pred CCCcccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCceeeeeEecCcccceeEEEEeeCCCcEEEEeecC
Q 017194 89 MPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLD 168 (375)
Q Consensus 89 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d 168 (375)
+....+.+.. ...+..+-. |.+|+..+.+ .|.+||+.+++.++.+. .. +|..+.|++++. +++..+.+
T Consensus 98 ~~~~~k~i~~----~~~~~~If~---G~LL~~~~~~-~i~~yDw~~~~~i~~i~--v~-~vk~V~Ws~~g~-~val~t~~ 165 (443)
T PF04053_consen 98 KNEVVKSIKL----PFSVEKIFG---GNLLGVKSSD-FICFYDWETGKLIRRID--VS-AVKYVIWSDDGE-LVALVTKD 165 (443)
T ss_dssp EE-TT---------SS-EEEEE----SSSEEEEETT-EEEEE-TTT--EEEEES--S--E-EEEEE-TTSS-EEEEE-S-
T ss_pred ccccceEEcC----CcccceEEc---CcEEEEECCC-CEEEEEhhHcceeeEEe--cC-CCcEEEEECCCC-EEEEEeCC
Confidence 2211112221 123444433 7777777654 89999999999999987 33 489999999998 56666644
Q ss_pred CeEEEeeCCC
Q 017194 169 SKLVMWDFSK 178 (375)
Q Consensus 169 ~~i~~wd~~~ 178 (375)
.+.+++.+.
T Consensus 166 -~i~il~~~~ 174 (443)
T PF04053_consen 166 -SIYILKYNL 174 (443)
T ss_dssp -SEEEEEE-H
T ss_pred -eEEEEEecc
Confidence 677776553
No 337
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.55 E-value=3.3e-06 Score=74.82 Aligned_cols=109 Identities=12% Similarity=0.137 Sum_probs=84.3
Q ss_pred EEEEEeCCCCeEEEEcC----CCeEEEEECCCCCcccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCcee
Q 017194 62 TSLCFKSGNEDIIYVSS----GKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCL 137 (375)
Q Consensus 62 ~~l~~~~~~~~l~~~~~----d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 137 (375)
+-..|+|...++++++. .|.|.||-- +|+....+ .+ +-.+++++|+|..-.|+.|-.-|.+.+|...+.+.
T Consensus 19 ti~SWHPsePlfAVA~fS~er~GSVtIfad-tGEPqr~V-t~---P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~ 93 (1416)
T KOG3617|consen 19 TISSWHPSEPLFAVASFSPERGGSVTIFAD-TGEPQRDV-TY---PVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTET 93 (1416)
T ss_pred cccccCCCCceeEEEEecCCCCceEEEEec-CCCCCccc-cc---ceehhhhccChHHHHHhhccccceeEEEecCCcee
Confidence 34578998888887764 478888853 33321211 22 23467899999988899999999999999876655
Q ss_pred eeeEecCcccceeEEEEeeCCCcEEEEeecCCeEEEeeCC
Q 017194 138 YKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFS 177 (375)
Q Consensus 138 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~ 177 (375)
-.... .|..++..+.|+++|. .++++..-|.|.+|...
T Consensus 94 htv~~-th~a~i~~l~wS~~G~-~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 94 HTVVE-THPAPIQGLDWSHDGT-VLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred eeecc-CCCCCceeEEecCCCC-eEEEcCCCceeEEEEee
Confidence 44444 8999999999999999 89999999999999876
No 338
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.54 E-value=0.00042 Score=59.55 Aligned_cols=144 Identities=12% Similarity=0.170 Sum_probs=91.9
Q ss_pred ceeEEEEeeCCCcEEEEee----cCCe----EEEeeCCCCCc--ceEEecCCCCCCCCCCcccCCCceeEEeecCCcccc
Q 017194 148 ICSSVQFIPWKPWEVISGG----LDSK----LVMWDFSKGRP--NKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLD 217 (375)
Q Consensus 148 ~v~~~~~~~~~~~~l~~~~----~d~~----i~~wd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 217 (375)
...++.|+-..++.+.+.. .+|. -.+|+...++. +...... .+..+.+.+++|
T Consensus 207 dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsip------------L~s~v~~ca~sp----- 269 (545)
T PF11768_consen 207 DPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIP------------LPSQVICCARSP----- 269 (545)
T ss_pred CcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEe------------cCCcceEEecCc-----
Confidence 4466777765555555532 2343 34566654432 2222222 457899999999
Q ss_pred CCCCEEEEEecCCcEEEEeCCCcceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEE
Q 017194 218 KTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVA 297 (375)
Q Consensus 218 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 297 (375)
+...++.|+.||.|.+||...+.. ......-....++
T Consensus 270 -~E~kLvlGC~DgSiiLyD~~~~~t------------------------------------------~~~ka~~~P~~ia 306 (545)
T PF11768_consen 270 -SEDKLVLGCEDGSIILYDTTRGVT------------------------------------------LLAKAEFIPTLIA 306 (545)
T ss_pred -ccceEEEEecCCeEEEEEcCCCee------------------------------------------eeeeecccceEEE
Confidence 799999999999999999986311 1112234568899
Q ss_pred EeecCCCCcEEEEecCCCeEEEEeCCCceeee----ecc-hhh--hhhhhcccccceeeeeecC
Q 017194 298 FSMFGERGKYLISGGNDKLVKVWDCSRFQGVQ----TSI-NND--LLIKNINLNKKVNWLCTTP 354 (375)
Q Consensus 298 ~s~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~----~~~-~~~--~~~~~~~~~~~v~~~~~~~ 354 (375)
|+ |+|.++++|+..|.+.+||+.-..... +.. +.. .+.....+...+..+.|.+
T Consensus 307 WH---p~gai~~V~s~qGelQ~FD~ALspi~~qLlsEd~~P~~~L~Ls~yf~~~~~L~~iqW~~ 367 (545)
T PF11768_consen 307 WH---PDGAIFVVGSEQGELQCFDMALSPIKMQLLSEDATPKSTLQLSKYFRVSSSLVHIQWAP 367 (545)
T ss_pred Ec---CCCcEEEEEcCCceEEEEEeecCccceeeccccCCCccEEeeehhccCcchhheeEecc
Confidence 99 999999999999999999987653211 000 001 1122334566677778874
No 339
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.52 E-value=0.00017 Score=55.37 Aligned_cols=67 Identities=9% Similarity=-0.053 Sum_probs=50.4
Q ss_pred CCEEEEeCCCCcEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEEcCCCeEEEEECCCCCccc
Q 017194 28 PGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWR 94 (375)
Q Consensus 28 ~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~ 94 (375)
+++++.|...|.+.+.+.++|+....+..-..-=......+++..+..++.|++.+..|.++.....
T Consensus 63 gdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVy 129 (354)
T KOG4649|consen 63 GDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVY 129 (354)
T ss_pred CCEEEEEEccCcEEEEEecchhheeeeeehhhhccceEEcCCCceEEEecCCCcEEEecccccceEE
Confidence 4578889999999999999998877766432211223446788899999999999999998754433
No 340
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.49 E-value=0.00038 Score=56.52 Aligned_cols=183 Identities=11% Similarity=0.105 Sum_probs=109.5
Q ss_pred CcEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEEcC----------CCeEEEEECCCCCcccccccccCC----C
Q 017194 38 GCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSS----------GKEVKSFDVHMPASWRPLESYNYN----K 103 (375)
Q Consensus 38 ~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~----------d~~i~iwd~~~~~~~~~~~~~~~~----~ 103 (375)
+.+.++|.++++.+..+.. +-.-.+..+|+++.+++++. .-.|.+||..+-.....+.....| .
T Consensus 17 ~rv~viD~d~~k~lGmi~~--g~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~ 94 (342)
T PF06433_consen 17 SRVYVIDADSGKLLGMIDT--GFLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVV 94 (342)
T ss_dssp EEEEEEETTTTEEEEEEEE--ESSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS
T ss_pred ceEEEEECCCCcEEEEeec--ccCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheec
Confidence 4799999999888777764 23334667999998887542 237999999874333322221110 1
Q ss_pred cceeEEEEcCCCCeEEEEe--CCCcEEEEeCcCceeeeeEecCcccceeEEEEeeCCCcEEEEeecCCeEEEeeCC-CCC
Q 017194 104 EEINQIVCNPKSSFLACAD--DGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFS-KGR 180 (375)
Q Consensus 104 ~~v~~~~~~~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~-~~~ 180 (375)
.....++++.|++++++.. -.-.|.|.|+..++.+..+. . . .+. ...|.++.-|.+-+.||.+.-..+. .|+
T Consensus 95 ~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~-~-P-GC~--~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk 169 (342)
T PF06433_consen 95 PYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEID-T-P-GCW--LIYPSGNRGFSMLCGDGSLLTVTLDADGK 169 (342)
T ss_dssp --GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEE-G-T-SEE--EEEEEETTEEEEEETTSCEEEEEETSTSS
T ss_pred ccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeec-C-C-CEE--EEEecCCCceEEEecCCceEEEEECCCCC
Confidence 2234578889999988764 34579999999999988887 2 1 222 2234443358888899999999988 455
Q ss_pred cceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCcc
Q 017194 181 PNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESEL 241 (375)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~ 241 (375)
...... ..- ... .......-++.. .+..++--+.+|.|+-.|+....
T Consensus 170 ~~~~~t-~~F--~~~-----~dp~f~~~~~~~------~~~~~~F~Sy~G~v~~~dlsg~~ 216 (342)
T PF06433_consen 170 EAQKST-KVF--DPD-----DDPLFEHPAYSR------DGGRLYFVSYEGNVYSADLSGDS 216 (342)
T ss_dssp EEEEEE-EES--STT-----TS-B-S--EEET------TTTEEEEEBTTSEEEEEEETTSS
T ss_pred EeEeec-ccc--CCC-----CcccccccceEC------CCCeEEEEecCCEEEEEeccCCc
Confidence 542221 000 000 001111112222 35556657888999988888653
No 341
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=98.47 E-value=1.8e-05 Score=67.71 Aligned_cols=171 Identities=16% Similarity=0.133 Sum_probs=104.4
Q ss_pred CCeeeecCCCceeEEEEecCCCCEEEEe---CCC-CcEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEEcC-CC-
Q 017194 7 KPRRLRGHKATATCCIASRDRPGFVASS---GED-GCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSS-GK- 80 (375)
Q Consensus 7 ~~~~l~~h~~~i~~~~~~~~~~~~l~s~---~~d-~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~-d~- 80 (375)
..+.+..-...+..-.|+|+ +..++.. ... ..+.++++++++....+. -...-..-+|+|||+.|+.+.. |+
T Consensus 184 ~~~~l~~~~~~~~~p~ws~~-~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-~~g~~~~P~fspDG~~l~f~~~rdg~ 261 (425)
T COG0823 184 NQQKLTDSGSLILTPAWSPD-GKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-FNGNNGAPAFSPDGSKLAFSSSRDGS 261 (425)
T ss_pred ceeEecccCcceeccccCcC-CCceEEEEEecCCCceEEEEeccCCccceeec-cCCccCCccCCCCCCEEEEEECCCCC
Confidence 33444444456777789998 5554433 222 459999999888755554 2334456789999998876654 45
Q ss_pred -eEEEEECCCCCcccccccccCCCcceeEEEEcCCCCeEEEEeC-CC--cEEEEeCcCceeeeeEecCcccceeEEEEee
Q 017194 81 -EVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADD-GG--DVKIIDIRQHCLYKSLRAGHSSICSSVQFIP 156 (375)
Q Consensus 81 -~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg--~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~ 156 (375)
.|++.|+.+... ..+... .+.-..-.|+|||++|+..+. .| .|.+++.+.+.. ..+. .....-..-.|+|
T Consensus 262 ~~iy~~dl~~~~~-~~Lt~~---~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~-~riT-~~~~~~~~p~~Sp 335 (425)
T COG0823 262 PDIYLMDLDGKNL-PRLTNG---FGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV-TRLT-FSGGGNSNPVWSP 335 (425)
T ss_pred ccEEEEcCCCCcc-eecccC---CccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce-eEee-ccCCCCcCccCCC
Confidence 577778876542 223333 233336789999999887654 33 477777765554 3333 2222223778999
Q ss_pred CCCcEEEEeecCCe--EEEeeCCCCCcceEE
Q 017194 157 WKPWEVISGGLDSK--LVMWDFSKGRPNKIV 185 (375)
Q Consensus 157 ~~~~~l~~~~~d~~--i~~wd~~~~~~~~~~ 185 (375)
+|+++++....+|. |.+.|+.++.....+
T Consensus 336 dG~~i~~~~~~~g~~~i~~~~~~~~~~~~~l 366 (425)
T COG0823 336 DGDKIVFESSSGGQWDIDKNDLASGGKIRIL 366 (425)
T ss_pred CCCEEEEEeccCCceeeEEeccCCCCcEEEc
Confidence 99954444433454 667777666543333
No 342
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=98.45 E-value=0.00013 Score=61.93 Aligned_cols=151 Identities=15% Similarity=0.177 Sum_probs=83.0
Q ss_pred ceeEEEEecCCCCEEEEeCCCCcEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEEcCCCeEEEEECCC---C---
Q 017194 17 TATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHM---P--- 90 (375)
Q Consensus 17 ~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i~iwd~~~---~--- 90 (375)
.|+++.|.++ ..-|+.|...|.|.||.+...+... .....+-....+.+- ...++.-.+-|+.. .
T Consensus 3 ~v~~vs~a~~-t~Elav~~~~GeVv~~k~~~n~~~~--~~~~~~~~~~~~~~~------~~~~~~~~l~di~~r~~~~~~ 73 (395)
T PF08596_consen 3 SVTHVSFAPE-TLELAVGLESGEVVLFKFGKNQNYG--NREQPPDLDYNFRRF------SLNNSPGKLTDISDRAPPSLK 73 (395)
T ss_dssp -EEEEEEETT-TTEEEEEETTS-EEEEEEEE--------------------S--------GGGSS-SEEE-GGG--TT-S
T ss_pred eEEEEEecCC-CceEEEEccCCcEEEEEcccCCCCC--ccCCCcccCcccccc------cccCCCcceEEehhhCCcccc
Confidence 5889999998 6778889999999999987654322 000111111111110 00111222333322 1
Q ss_pred CcccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCceeeeeEec-------CcccceeEEEEee---CC-C
Q 017194 91 ASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRA-------GHSSICSSVQFIP---WK-P 159 (375)
Q Consensus 91 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-------~~~~~v~~~~~~~---~~-~ 159 (375)
+...+..-+....++|++++.+.-| ++++|..+|.+.|.|++....+..-.. .....++++.|.- .+ .
T Consensus 74 ~gf~P~~l~~~~~g~vtal~~S~iG-Fvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ 152 (395)
T PF08596_consen 74 EGFLPLTLLDAKQGPVTALKNSDIG-FVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDG 152 (395)
T ss_dssp EEEEEEEEE---S-SEEEEEE-BTS-EEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSS
T ss_pred cccCchhheeccCCcEeEEecCCCc-EEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCc
Confidence 1123333344447899999998555 999999999999999987776654220 1234677888862 11 1
Q ss_pred ---cEEEEeecCCeEEEeeCC
Q 017194 160 ---WEVISGGLDSKLVMWDFS 177 (375)
Q Consensus 160 ---~~l~~~~~d~~i~~wd~~ 177 (375)
-.+++|+..|.+.+|.+.
T Consensus 153 ySSi~L~vGTn~G~v~~fkIl 173 (395)
T PF08596_consen 153 YSSICLLVGTNSGNVLTFKIL 173 (395)
T ss_dssp SEEEEEEEEETTSEEEEEEEE
T ss_pred ccceEEEEEeCCCCEEEEEEe
Confidence 268899999999999875
No 343
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=98.44 E-value=4.5e-05 Score=69.36 Aligned_cols=143 Identities=15% Similarity=0.205 Sum_probs=99.4
Q ss_pred CEEEEe-CCCCcEEEEecccCceeeEeeecCcc-EEEEEEeC-----CCCeEEEEcCCCeEEEEECCCCCccccc----c
Q 017194 29 GFVASS-GEDGCICWFDLRSKDVQLVTDVGNGP-VTSLCFKS-----GNEDIIYVSSGKEVKSFDVHMPASWRPL----E 97 (375)
Q Consensus 29 ~~l~s~-~~d~~i~iw~~~~~~~~~~~~~~~~~-v~~l~~~~-----~~~~l~~~~~d~~i~iwd~~~~~~~~~~----~ 97 (375)
++|+.- .....|.-.|++.|+.+..+..|... |..++=.. .....+.|-.++.+..||.+-... +.+ .
T Consensus 494 ~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~-k~v~~~~k 572 (794)
T PF08553_consen 494 NMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGN-KLVDSQSK 572 (794)
T ss_pred ceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCC-ceeecccc
Confidence 344433 34578999999999999999887644 55443221 123456677789999999985431 111 1
Q ss_pred cccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCceeeeeEecCcccceeEEEEeeCCCcEEEEeecCCeEEEeeCC
Q 017194 98 SYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFS 177 (375)
Q Consensus 98 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~ 177 (375)
.+ .......|++-+.+| +||+|+.+|.||+||--..+....|. +...+|.+|..+.||+|+|+|| +..+.+++..
T Consensus 573 ~Y-~~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~~g~~AKT~lp-~lG~pI~~iDvt~DGkwilaTc--~tyLlLi~t~ 647 (794)
T PF08553_consen 573 QY-SSKNNFSCFATTEDG-YIAVGSNKGDIRLYDRLGKRAKTALP-GLGDPIIGIDVTADGKWILATC--KTYLLLIDTL 647 (794)
T ss_pred cc-ccCCCceEEEecCCc-eEEEEeCCCcEEeecccchhhhhcCC-CCCCCeeEEEecCCCcEEEEee--cceEEEEEEe
Confidence 22 224567788887777 89999999999999954334444566 7789999999999999766655 4678888863
No 344
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.42 E-value=9.3e-06 Score=70.49 Aligned_cols=123 Identities=14% Similarity=0.188 Sum_probs=89.5
Q ss_pred CcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCceeeeeEecCcccceeEEEEeeCCCcEEEEeecCCeEEEeeCCCCCcc
Q 017194 103 KEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPN 182 (375)
Q Consensus 103 ~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~ 182 (375)
...|.--+++..+++++.|+.-|.+++|+-..++....-..+-.+.+..+..+++.. ++|.|+..|.|.++-++...+.
T Consensus 33 ~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~-lvAagt~~g~V~v~ql~~~~p~ 111 (726)
T KOG3621|consen 33 PARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEY-LVAAGTASGRVSVFQLNKELPR 111 (726)
T ss_pred cceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhH-hhhhhcCCceEEeehhhccCCC
Confidence 445555667778899999999999999997666543322213344555666777765 7899999999999998875443
Q ss_pred eEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCC
Q 017194 183 KIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIES 239 (375)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 239 (375)
...... +. ...|+..|++++|++ ++..+++|...|+|..-.+.+
T Consensus 112 ~~~~~t-~~------d~~~~~rVTal~Ws~------~~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 112 DLDYVT-PC------DKSHKCRVTALEWSK------NGMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred cceeec-cc------cccCCceEEEEEecc------cccEEeecCCCceEEEEEech
Confidence 333222 11 111678999999999 899999999999999988876
No 345
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=98.40 E-value=0.00023 Score=60.42 Aligned_cols=159 Identities=14% Similarity=0.048 Sum_probs=87.7
Q ss_pred cEEEEEEeCCCCeEEEEcCCCeEEEEECCCCCcccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcC-----
Q 017194 60 PVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQ----- 134 (375)
Q Consensus 60 ~v~~l~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~----- 134 (375)
.|+.+.|.++..-|+++...|.|.+|.....+... ... ..+-....+.+- ...++.-.+-|+..
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~--~~~---~~~~~~~~~~~~------~~~~~~~~l~di~~r~~~~ 71 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYG--NRE---QPPDLDYNFRRF------SLNNSPGKLTDISDRAPPS 71 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE-----------------------S--------GGGSS-SEEE-GGG--TT
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCC--ccC---CCcccCcccccc------cccCCCcceEEehhhCCcc
Confidence 58899999998889999999999999887533221 000 011111111110 01111222333332
Q ss_pred ---c-eeeeeEecCcccceeEEEEeeCCCcEEEEeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEee
Q 017194 135 ---H-CLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAI 210 (375)
Q Consensus 135 ---~-~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 210 (375)
+ .+...+. ...++|++++.+.-| +++.|+.+|.+.+.|+|....+..-.... ..........++++.|
T Consensus 72 ~~~gf~P~~l~~-~~~g~vtal~~S~iG--Fvaigy~~G~l~viD~RGPavI~~~~i~~-----~~~~~~~~~~vt~ieF 143 (395)
T PF08596_consen 72 LKEGFLPLTLLD-AKQGPVTALKNSDIG--FVAIGYESGSLVVIDLRGPAVIYNENIRE-----SFLSKSSSSYVTSIEF 143 (395)
T ss_dssp -SEEEEEEEEE----S-SEEEEEE-BTS--EEEEEETTSEEEEEETTTTEEEEEEEGGG-------T-SS----EEEEEE
T ss_pred cccccCchhhee-ccCCcEeEEecCCCc--EEEEEecCCcEEEEECCCCeEEeeccccc-----cccccccccCeeEEEE
Confidence 1 2333444 557899999999777 89999999999999999877776644331 0011112356778888
Q ss_pred cCCccccCC---CCEEEEEecCCcEEEEeCC
Q 017194 211 PDADMLDKT---NKICVVAKGDGVVDVINIE 238 (375)
Q Consensus 211 ~~~~~~~~~---~~~l~~~~~dg~i~i~d~~ 238 (375)
.-... ..| .-.+++|+..|.+.+|.+.
T Consensus 144 ~vm~~-~~D~ySSi~L~vGTn~G~v~~fkIl 173 (395)
T PF08596_consen 144 SVMTL-GGDGYSSICLLVGTNSGNVLTFKIL 173 (395)
T ss_dssp EEEE--TTSSSEEEEEEEEETTSEEEEEEEE
T ss_pred EEEec-CCCcccceEEEEEeCCCCEEEEEEe
Confidence 74221 222 3578999999999999875
No 346
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=98.39 E-value=0.00097 Score=57.06 Aligned_cols=231 Identities=11% Similarity=0.053 Sum_probs=144.8
Q ss_pred ceeEEEEecCCCCEEEEeCCCCcEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEE-cCCCeEEEEECCCCCcccc
Q 017194 17 TATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYV-SSGKEVKSFDVHMPASWRP 95 (375)
Q Consensus 17 ~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~~d~~i~iwd~~~~~~~~~ 95 (375)
....+...|++.+..++-.....+...+................-..++.++.+..+... ..++.|.+.|..+.+....
T Consensus 32 ~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~~n~~~~~~~~g~~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~ 111 (381)
T COG3391 32 GPGGVAVNPDGTQVYVANSGSNDVSVIDATSNTVTQSLSVGGVYPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGS 111 (381)
T ss_pred CCceeEEcCccCEEEEEeecCceeeecccccceeeeeccCCCccccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeE
Confidence 344567777732333333222245555544222122122111334567888888755444 4458999999776554444
Q ss_pred cccccCCCcceeEEEEcCCCCeEEEEeC---CCcEEEEeCcCceeeeeEecCcccceeEEEEeeCCCcEEEEeecCCeEE
Q 017194 96 LESYNYNKEEINQIVCNPKSSFLACADD---GGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLV 172 (375)
Q Consensus 96 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~ 172 (375)
... ......++++|+++.+.++.. ++.+.+.|..+.+.+.... .-..+ ..+++.|++...+++-..++.|.
T Consensus 112 ~~v----G~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~-vG~~P-~~~a~~p~g~~vyv~~~~~~~v~ 185 (381)
T COG3391 112 IPV----GLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIP-VGNTP-TGVAVDPDGNKVYVTNSDDNTVS 185 (381)
T ss_pred eee----ccCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEe-cCCCc-ceEEECCCCCeEEEEecCCCeEE
Confidence 433 236678999999988777765 6889999998888887765 22234 89999999985556666889999
Q ss_pred EeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecC---CcEEEEeCCCcceeec-ccc
Q 017194 173 MWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGD---GVVDVINIESELNISR-SKS 248 (375)
Q Consensus 173 ~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~d---g~i~i~d~~~~~~~~~-~~~ 248 (375)
+.|........ -... ...........+.+.| ++..+.+.... +.+...|..+...... ...
T Consensus 186 vi~~~~~~v~~-~~~~--------~~~~~~~~P~~i~v~~------~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~ 250 (381)
T COG3391 186 VIDTSGNSVVR-GSVG--------SLVGVGTGPAGIAVDP------DGNRVYVANDGSGSNNVLKIDTATGNVTATDLPV 250 (381)
T ss_pred EEeCCCcceec-cccc--------cccccCCCCceEEECC------CCCEEEEEeccCCCceEEEEeCCCceEEEecccc
Confidence 99976554442 1100 0000123446778888 78877766554 5899999988766554 333
Q ss_pred cCCCCCCceeecccccceeee
Q 017194 249 TTKPLKGSQSTSKVNIRDAEM 269 (375)
Q Consensus 249 ~~~~~~~~~~~s~~g~~~~~~ 269 (375)
... ....+.+.|+|+.+...
T Consensus 251 ~~~-~~~~v~~~p~g~~~yv~ 270 (381)
T COG3391 251 GSG-APRGVAVDPAGKAAYVA 270 (381)
T ss_pred ccC-CCCceeECCCCCEEEEE
Confidence 333 66778899999988764
No 347
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=98.39 E-value=0.00049 Score=56.25 Aligned_cols=221 Identities=12% Similarity=0.105 Sum_probs=121.2
Q ss_pred CCCCeEEEEcCCCeEEEEECCCCCcccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCceeeeeE------
Q 017194 68 SGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSL------ 141 (375)
Q Consensus 68 ~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~------ 141 (375)
..++.|+.|+.+| +.+++.........+.. ...|..+...|+-+.+++-+ |+.++++++..-.....-
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~~----~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~ 78 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRILK----LSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFP 78 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCccceeEee----cceEEEEEEecccCEEEEEc-CCccEEEEchhhcccccccccccc
Confidence 3567899998888 89999843322222222 33499999999877777764 499999998754332210
Q ss_pred -------ecCcccceeEEE--EeeCCCcEEEEeecCCeEEEeeCCCC-----CcceEEecCCCCCCCCCCcccCCCceeE
Q 017194 142 -------RAGHSSICSSVQ--FIPWKPWEVISGGLDSKLVMWDFSKG-----RPNKIVNFGLPENNGNAGQCYNPAFVHA 207 (375)
Q Consensus 142 -------~~~~~~~v~~~~--~~~~~~~~l~~~~~d~~i~~wd~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 207 (375)
.......+...+ -...+. ..+......+|.+|..... +..+++.. +..+.+
T Consensus 79 ~~~~~~~~~~~~~~v~~f~~~~~~~~~-~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~l--------------p~~~~~ 143 (275)
T PF00780_consen 79 KSRSLPTKLPETKGVSFFAVNGGHEGS-RRLCVAVKKKILIYEWNDPRNSFSKLLKEISL--------------PDPPSS 143 (275)
T ss_pred ccccccccccccCCeeEEeeccccccc-eEEEEEECCEEEEEEEECCcccccceeEEEEc--------------CCCcEE
Confidence 001223344444 112333 3444445558888887653 34455553 478899
Q ss_pred EeecCCccccCCCCEEEEEecCCcEEEEeCCCcceeecccccCC----------CCCCceeecccccceee---eeeeec
Q 017194 208 IAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTK----------PLKGSQSTSKVNIRDAE---MEILDQ 274 (375)
Q Consensus 208 ~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~----------~~~~~~~~s~~g~~~~~---~~~~~~ 274 (375)
++|. ++.+++|..+ ...+.|+.++........... .....+..-+++.++.. .+..-.
T Consensus 144 i~~~--------~~~i~v~~~~-~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Ll~~~~~g~fv~ 214 (275)
T PF00780_consen 144 IAFL--------GNKICVGTSK-GFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQLSDNEFLLCYDNIGVFVN 214 (275)
T ss_pred EEEe--------CCEEEEEeCC-ceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEeCCceEEEEecceEEEEc
Confidence 9996 5677777654 578889886544332211110 11111222233444443 222222
Q ss_pred CCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEecCCCeEEEEeCCCce
Q 017194 275 SGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQ 326 (375)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd~~~~~ 326 (375)
..+...+ ...+.- .....++++. ..||++.+. +.|.||++.+++
T Consensus 215 ~~G~~~r-~~~i~W-~~~p~~~~~~-----~pyli~~~~-~~iEV~~~~~~~ 258 (275)
T PF00780_consen 215 KNGEPSR-KSTIQW-SSAPQSVAYS-----SPYLIAFSS-NSIEVRSLETGE 258 (275)
T ss_pred CCCCcCc-ccEEEc-CCchhEEEEE-----CCEEEEECC-CEEEEEECcCCc
Confidence 2222111 111111 2244555554 247777776 459999999984
No 348
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=98.33 E-value=0.00077 Score=52.89 Aligned_cols=197 Identities=9% Similarity=0.006 Sum_probs=118.0
Q ss_pred ceeEEEEcCCCCeEEEEeCCC--cEEEEeCcCceeeeeEecCcccceeEEEEeeCCCcEEEEeecCCeEEEeeCCCCCcc
Q 017194 105 EINQIVCNPKSSFLACADDGG--DVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPN 182 (375)
Q Consensus 105 ~v~~~~~~~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~ 182 (375)
--..+.|..++.++-+.+.-| .|+.+|+.+++......-...-.-..++...+. ++...-.++...+||..+.+.+
T Consensus 46 FTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d~--l~qLTWk~~~~f~yd~~tl~~~ 123 (264)
T PF05096_consen 46 FTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILGDK--LYQLTWKEGTGFVYDPNTLKKI 123 (264)
T ss_dssp EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEETTE--EEEEESSSSEEEEEETTTTEEE
T ss_pred cCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEECCE--EEEEEecCCeEEEEccccceEE
Confidence 345677877787777777655 699999999988766552233344566666442 5666678899999999999999
Q ss_pred eEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCcceeecccccCCCCCCceeeccc
Q 017194 183 KIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKV 262 (375)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~ 262 (375)
.++.+. ..-..++. +++.|+.......|+++|..+.+......- ..+
T Consensus 124 ~~~~y~--------------~EGWGLt~--------dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V-----------~~~ 170 (264)
T PF05096_consen 124 GTFPYP--------------GEGWGLTS--------DGKRLIMSDGSSRLYFLDPETFKEVRTIQV-----------TDN 170 (264)
T ss_dssp EEEE-S--------------SS--EEEE--------CSSCEEEE-SSSEEEEE-TTT-SEEEEEE------------EET
T ss_pred EEEecC--------------CcceEEEc--------CCCEEEEECCccceEEECCcccceEEEEEE-----------EEC
Confidence 888755 34456664 688888888888999999887543321110 000
Q ss_pred ccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEecCCCeEEEEeCCCceeeeecchhhhhhhhc-
Q 017194 263 NIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNI- 341 (375)
Q Consensus 263 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~- 341 (375)
... -..++.+.+- +|...|=.=....|..-|..+++......-..+.....
T Consensus 171 --------------g~p----------v~~LNELE~i----~G~IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~ 222 (264)
T PF05096_consen 171 --------------GRP----------VSNLNELEYI----NGKIYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGR 222 (264)
T ss_dssp --------------TEE-------------EEEEEEE----TTEEEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTS
T ss_pred --------------CEE----------CCCcEeEEEE----cCEEEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccc
Confidence 001 1234555554 56555555555667777777776554333223332211
Q ss_pred -----ccccceeeeeecCCCCCcEEEee
Q 017194 342 -----NLNKKVNWLCTTPTESENLVVCD 364 (375)
Q Consensus 342 -----~~~~~v~~~~~~~~~~~~l~s~~ 364 (375)
......+.+|+.|..+++++||=
T Consensus 223 ~~~~~~~~dVLNGIAyd~~~~~l~vTGK 250 (264)
T PF05096_consen 223 DKSRQPDDDVLNGIAYDPETDRLFVTGK 250 (264)
T ss_dssp TTST--TTS-EEEEEEETTTTEEEEEET
T ss_pred cccccccCCeeEeEeEeCCCCEEEEEeC
Confidence 12456899999996677777764
No 349
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=98.32 E-value=0.00013 Score=62.58 Aligned_cols=201 Identities=15% Similarity=0.125 Sum_probs=118.8
Q ss_pred cEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEEcC---C-CeEEEEECCCCCcccccccccCCCcceeEEEEcCC
Q 017194 39 CICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSS---G-KEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPK 114 (375)
Q Consensus 39 ~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~---d-~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 114 (375)
.+.+-|.+ +...+.+......+..-+|+|++..++.... . ..+.++++.+++....+. + .+.-...+|+||
T Consensus 174 ~l~~~D~d-g~~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-~---~g~~~~P~fspD 248 (425)
T COG0823 174 ELALGDYD-GYNQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-F---NGNNGAPAFSPD 248 (425)
T ss_pred eEEEEccC-CcceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec-c---CCccCCccCCCC
Confidence 34444443 4445555555667778899999988766532 2 469999999876544443 3 344456789999
Q ss_pred CCeEEEEe-CCCc--EEEEeCcCceeeeeEecCcccceeEEEEeeCCCcEEEEeecCCe--EEEeeCCCCCcceEEecCC
Q 017194 115 SSFLACAD-DGGD--VKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSK--LVMWDFSKGRPNKIVNFGL 189 (375)
Q Consensus 115 ~~~l~~~~-~dg~--i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~--i~~wd~~~~~~~~~~~~~~ 189 (375)
|+.|+... .||. |+++|+..+.. ..+. .-.+.-..-.|+|+|++++++.+..|. |.++|++.+.. ..+...
T Consensus 249 G~~l~f~~~rdg~~~iy~~dl~~~~~-~~Lt-~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~-~riT~~- 324 (425)
T COG0823 249 GSKLAFSSSRDGSPDIYLMDLDGKNL-PRLT-NGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV-TRLTFS- 324 (425)
T ss_pred CCEEEEEECCCCCccEEEEcCCCCcc-eecc-cCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce-eEeecc-
Confidence 98876554 5554 67778776663 3354 233333467899999977777766665 55556554443 444322
Q ss_pred CCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEec-CCc--EEEEeCCCcceeecccccCCCCCCceeecccccce
Q 017194 190 PENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKG-DGV--VDVINIESELNISRSKSTTKPLKGSQSTSKVNIRD 266 (375)
Q Consensus 190 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~-dg~--i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~ 266 (375)
...-..-.++| +|++++..+. +|. |.+.|+.++.....+ ..........+.++|+.+
T Consensus 325 ------------~~~~~~p~~Sp------dG~~i~~~~~~~g~~~i~~~~~~~~~~~~~l--t~~~~~e~ps~~~ng~~i 384 (425)
T COG0823 325 ------------GGGNSNPVWSP------DGDKIVFESSSGGQWDIDKNDLASGGKIRIL--TSTYLNESPSWAPNGRMI 384 (425)
T ss_pred ------------CCCCcCccCCC------CCCEEEEEeccCCceeeEEeccCCCCcEEEc--cccccCCCCCcCCCCceE
Confidence 11112556666 8998887764 344 666666554421111 111223344566677665
Q ss_pred ee
Q 017194 267 AE 268 (375)
Q Consensus 267 ~~ 268 (375)
..
T Consensus 385 ~~ 386 (425)
T COG0823 385 MF 386 (425)
T ss_pred EE
Confidence 43
No 350
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=98.30 E-value=0.00058 Score=57.17 Aligned_cols=191 Identities=14% Similarity=0.216 Sum_probs=106.4
Q ss_pred CCeEEEEeC----------CCcEEEEeCcCc----eeeeeE-ecCcccceeEEEEeeCCCcEEEEeecCCeEEEeeCCCC
Q 017194 115 SSFLACADD----------GGDVKIIDIRQH----CLYKSL-RAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKG 179 (375)
Q Consensus 115 ~~~l~~~~~----------dg~i~iwd~~~~----~~~~~~-~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~ 179 (375)
..+|++|.. .|.|.++++... ..+..+ .....++|++++-. +. .++.+. .+.|.+|++...
T Consensus 42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~--~~-~lv~~~-g~~l~v~~l~~~ 117 (321)
T PF03178_consen 42 KEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHSTEVKGPVTAICSF--NG-RLVVAV-GNKLYVYDLDNS 117 (321)
T ss_dssp SEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEE--TT-EEEEEE-TTEEEEEEEETT
T ss_pred cCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEEEeecCcceEhhhh--CC-EEEEee-cCEEEEEEccCc
Confidence 456777652 288999999873 122211 11357789988876 33 344433 479999999987
Q ss_pred C-cceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCcceeecccccCCCCCCcee
Q 017194 180 R-PNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQS 258 (375)
Q Consensus 180 ~-~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~ 258 (375)
+ ....-... .+..+.++... ++++++|+....+.++.....
T Consensus 118 ~~l~~~~~~~------------~~~~i~sl~~~--------~~~I~vgD~~~sv~~~~~~~~------------------ 159 (321)
T PF03178_consen 118 KTLLKKAFYD------------SPFYITSLSVF--------KNYILVGDAMKSVSLLRYDEE------------------ 159 (321)
T ss_dssp SSEEEEEEE-------------BSSSEEEEEEE--------TTEEEEEESSSSEEEEEEETT------------------
T ss_pred ccchhhheec------------ceEEEEEEecc--------ccEEEEEEcccCEEEEEEEcc------------------
Confidence 7 44433332 23466666664 669999998888888755431
Q ss_pred ecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEecCCCeEEEEeCCCceeeeecchhh-hh
Q 017194 259 TSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINND-LL 337 (375)
Q Consensus 259 ~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~~ 337 (375)
...+..+.. ......+.++.+- ++++.++.+..+|.+.++........... .. .+
T Consensus 160 ------------------~~~l~~va~-d~~~~~v~~~~~l---~d~~~~i~~D~~gnl~~l~~~~~~~~~~~--~~~~L 215 (321)
T PF03178_consen 160 ------------------NNKLILVAR-DYQPRWVTAAEFL---VDEDTIIVGDKDGNLFVLRYNPEIPNSRD--GDPKL 215 (321)
T ss_dssp ------------------TE-EEEEEE-ESS-BEEEEEEEE----SSSEEEEEETTSEEEEEEE-SS-SSTTT--TTTBE
T ss_pred ------------------CCEEEEEEe-cCCCccEEEEEEe---cCCcEEEEEcCCCeEEEEEECCCCccccc--ccccc
Confidence 111222222 1224567888887 67679999999999999988742110000 01 11
Q ss_pred h--hhcccccceeee---eecCC--CCC-----cEEEeeCCCeEEE
Q 017194 338 I--KNINLNKKVNWL---CTTPT--ESE-----NLVVCDTSKVVKV 371 (375)
Q Consensus 338 ~--~~~~~~~~v~~~---~~~~~--~~~-----~l~s~~~dg~v~i 371 (375)
. ........|+++ ++.|. +.+ .++-++.+|.|.+
T Consensus 216 ~~~~~f~lg~~v~~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~ 261 (321)
T PF03178_consen 216 ERISSFHLGDIVNSFRRGSLIPRSGSSESPNRPQILYGTVDGSIGV 261 (321)
T ss_dssp EEEEEEE-SS-EEEEEE--SS--SSSS-TTEEEEEEEEETTS-EEE
T ss_pred eeEEEEECCCccceEEEEEeeecCCCCcccccceEEEEecCCEEEE
Confidence 1 112234566666 44441 222 3777888998873
No 351
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=98.29 E-value=0.0015 Score=56.41 Aligned_cols=196 Identities=10% Similarity=0.065 Sum_probs=101.9
Q ss_pred cEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEEcCCCeEEEEECCCCC---cccccccccCCCcceeEEEEcCCC
Q 017194 39 CICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPA---SWRPLESYNYNKEEINQIVCNPKS 115 (375)
Q Consensus 39 ~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i~iwd~~~~~---~~~~~~~~~~~~~~v~~~~~~~~~ 115 (375)
.|.||+.. |+.+..+.-..+.|.++.|+.+. .|+....||.++++|+.... ....+....-....+....+..+|
T Consensus 62 ~I~iys~s-G~ll~~i~w~~~~iv~~~wt~~e-~LvvV~~dG~v~vy~~~G~~~fsl~~~i~~~~v~e~~i~~~~~~~~G 139 (410)
T PF04841_consen 62 SIQIYSSS-GKLLSSIPWDSGRIVGMGWTDDE-ELVVVQSDGTVRVYDLFGEFQFSLGEEIEEEKVLECRIFAIWFYKNG 139 (410)
T ss_pred EEEEECCC-CCEeEEEEECCCCEEEEEECCCC-eEEEEEcCCEEEEEeCCCceeechhhhccccCcccccccccccCCCC
Confidence 48888854 66777766556899999998865 56677789999999986322 011111111111222222333355
Q ss_pred CeEEEEeCCCcEEEEeCcCce-eeeeEec--Ccc------cceeE-EEEeeCCCcEEEEeecCCeEEEeeCCCCCcceEE
Q 017194 116 SFLACADDGGDVKIIDIRQHC-LYKSLRA--GHS------SICSS-VQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIV 185 (375)
Q Consensus 116 ~~l~~~~~dg~i~iwd~~~~~-~~~~~~~--~~~------~~v~~-~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~ 185 (375)
++.-..++.+.+.+--... ..+.+.. ... ..... ..++.+.. ..+....++.+.+.+-...+. +
T Consensus 140 --ivvLt~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~-~~i~~~~g~~i~~i~~~~~~~---i 213 (410)
T PF04841_consen 140 --IVVLTGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRV-VEILLANGETIYIIDENSFKQ---I 213 (410)
T ss_pred --EEEECCCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCcc-eEEEEecCCEEEEEEcccccc---c
Confidence 3333344445444322211 1111110 000 00111 22333333 334444445555444222111 1
Q ss_pred ecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCcceeecccccCCCCCCceeeccc
Q 017194 186 NFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKV 262 (375)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~ 262 (375)
. ...++..+++|| +++++|.-..+|.+.+.+..-.+...............+.|.-+
T Consensus 214 ~--------------~~~~i~~iavSp------ng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~ 270 (410)
T PF04841_consen 214 D--------------SDGPIIKIAVSP------NGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGN 270 (410)
T ss_pred c--------------CCCCeEEEEECC------CCCEEEEEECCCCEEEEECcccceeEEeecCcCCCCcEEEEECC
Confidence 1 136799999999 89999999999999998766544444443333344445555444
No 352
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=98.28 E-value=0.00087 Score=57.34 Aligned_cols=199 Identities=13% Similarity=0.160 Sum_probs=138.5
Q ss_pred eEEEEecCCCCEEEEeCCCCcEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEEcC---CCeEEEEECCCCCcccc
Q 017194 19 TCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSS---GKEVKSFDVHMPASWRP 95 (375)
Q Consensus 19 ~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~---d~~i~iwd~~~~~~~~~ 95 (375)
..++.++.+.+..+....+..|.+.|..+.........-. ....++++|+++.+..+.. ++++.+.|..+.+....
T Consensus 77 ~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~-~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~ 155 (381)
T COG3391 77 AGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGL-GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTAT 155 (381)
T ss_pred cceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeecc-CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEE
Confidence 3567788844566666667899999988777766665433 6678999999988777665 57888888887655444
Q ss_pred cccccCCCcceeEEEEcCCCCeEEEEe-CCCcEEEEeCcCceeee-----eEecCcccceeEEEEeeCCCcEEEEeecC-
Q 017194 96 LESYNYNKEEINQIVCNPKSSFLACAD-DGGDVKIIDIRQHCLYK-----SLRAGHSSICSSVQFIPWKPWEVISGGLD- 168 (375)
Q Consensus 96 ~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~-----~~~~~~~~~v~~~~~~~~~~~~l~~~~~d- 168 (375)
... + ..+ ..+++.|+++.++... .++.|.+.|.......+ .+. -......+.+.|++.+..++...+
T Consensus 156 ~~v--G-~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~--~~~~P~~i~v~~~g~~~yV~~~~~~ 229 (381)
T COG3391 156 IPV--G-NTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVG--VGTGPAGIAVDPDGNRVYVANDGSG 229 (381)
T ss_pred Eec--C-CCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccc--cCCCCceEEECCCCCEEEEEeccCC
Confidence 222 1 233 8899999999776665 78899999977655543 122 233457789999998545554444
Q ss_pred -CeEEEeeCCCCCcceE-EecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEec-CCcEEEEeCCCccee
Q 017194 169 -SKLVMWDFSKGRPNKI-VNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKG-DGVVDVINIESELNI 243 (375)
Q Consensus 169 -~~i~~wd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~ 243 (375)
+.+...|..++..... ...+ .. ....+.+.| +++.+.+... .+.+.+.|..+....
T Consensus 230 ~~~v~~id~~~~~v~~~~~~~~------------~~-~~~~v~~~p------~g~~~yv~~~~~~~V~vid~~~~~v~ 288 (381)
T COG3391 230 SNNVLKIDTATGNVTATDLPVG------------SG-APRGVAVDP------AGKAAYVANSQGGTVSVIDGATDRVV 288 (381)
T ss_pred CceEEEEeCCCceEEEeccccc------------cC-CCCceeECC------CCCEEEEEecCCCeEEEEeCCCCcee
Confidence 6899999888776654 2222 11 456678888 7888888854 488999998875443
No 353
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=98.27 E-value=0.0014 Score=54.84 Aligned_cols=177 Identities=19% Similarity=0.238 Sum_probs=107.2
Q ss_pred CcEEEEecccCceeeEeeec-CccEEEEEE---eCC----CCeEEEEcC---------C-CeEEEEECCCC----Ccccc
Q 017194 38 GCICWFDLRSKDVQLVTDVG-NGPVTSLCF---KSG----NEDIIYVSS---------G-KEVKSFDVHMP----ASWRP 95 (375)
Q Consensus 38 ~~i~iw~~~~~~~~~~~~~~-~~~v~~l~~---~~~----~~~l~~~~~---------d-~~i~iwd~~~~----~~~~~ 95 (375)
..|++.|..+.+.+..+.-. ...+.+++. ..+ ..+++.|+. . |.|.++++... ..++.
T Consensus 2 s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~ 81 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKL 81 (321)
T ss_dssp -EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEE
T ss_pred cEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEE
Confidence 35888888888776665432 344555443 322 467777653 2 88999999873 23343
Q ss_pred cccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCce-eeeeEecCcccceeEEEEeeCCCcEEEEeecCCeEEEe
Q 017194 96 LESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHC-LYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMW 174 (375)
Q Consensus 96 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~w 174 (375)
+.... ..++|.+++-- ++ +|+++. .+.|.+|++...+ ....-.......+.++... ++ +++.|.....+.++
T Consensus 82 i~~~~-~~g~V~ai~~~-~~-~lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~--~~-~I~vgD~~~sv~~~ 154 (321)
T PF03178_consen 82 IHSTE-VKGPVTAICSF-NG-RLVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF--KN-YILVGDAMKSVSLL 154 (321)
T ss_dssp EEEEE-ESS-EEEEEEE-TT-EEEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE--TT-EEEEEESSSSEEEE
T ss_pred EEEEe-ecCcceEhhhh-CC-EEEEee-cCEEEEEEccCcccchhhheecceEEEEEEecc--cc-EEEEEEcccCEEEE
Confidence 33332 26788888766 34 455553 4789999998777 4333220122345555544 45 78899888888877
Q ss_pred eCCC-CCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCC
Q 017194 175 DFSK-GRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIE 238 (375)
Q Consensus 175 d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~ 238 (375)
..+. .+.+..+... ..+..++++.+-+ +++.++++..+|.+.++...
T Consensus 155 ~~~~~~~~l~~va~d-----------~~~~~v~~~~~l~------d~~~~i~~D~~gnl~~l~~~ 202 (321)
T PF03178_consen 155 RYDEENNKLILVARD-----------YQPRWVTAAEFLV------DEDTIIVGDKDGNLFVLRYN 202 (321)
T ss_dssp EEETTTE-EEEEEEE-----------SS-BEEEEEEEE-------SSSEEEEEETTSEEEEEEE-
T ss_pred EEEccCCEEEEEEec-----------CCCccEEEEEEec------CCcEEEEEcCCCeEEEEEEC
Confidence 5543 2223333211 0246788888886 45699999999999999876
No 354
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=98.23 E-value=0.002 Score=53.57 Aligned_cols=244 Identities=14% Similarity=0.080 Sum_probs=113.0
Q ss_pred cCCCCCeeeecCCCceeEE-----EEecCCCCEEEEeCCCC--cEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEE
Q 017194 3 DAEAKPRRLRGHKATATCC-----IASRDRPGFVASSGEDG--CICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIY 75 (375)
Q Consensus 3 ~~~~~~~~l~~h~~~i~~~-----~~~~~~~~~l~s~~~d~--~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~ 75 (375)
.|+.++..|..+...-..+ +|.+++.++|..+..|| .+.+.|+.+++..+.-.+.........++|+.+.++.
T Consensus 18 ~TG~~VtrLT~~~~~~h~~YF~~~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Y 97 (386)
T PF14583_consen 18 DTGHRVTRLTPPDGHSHRLYFYQNCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYY 97 (386)
T ss_dssp TT--EEEE-S-TTS-EE---TTS--B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEE
T ss_pred CCCceEEEecCCCCcccceeecCCCcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEE
Confidence 4666666676544333323 56777334555555554 5777788888765554433233335677888888887
Q ss_pred EcCCCeEEEEECCCCCcccccccccCCCcceeEEEE--cCCCCeEEEEe---C-------------------CCcEEEEe
Q 017194 76 VSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVC--NPKSSFLACAD---D-------------------GGDVKIID 131 (375)
Q Consensus 76 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~l~~~~---~-------------------dg~i~iwd 131 (375)
...+..|+-.|+++.+.. .+.... ...+-...| +.++..++-.- . ...|.-.|
T Consensus 98 v~~~~~l~~vdL~T~e~~-~vy~~p--~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~id 174 (386)
T PF14583_consen 98 VKNGRSLRRVDLDTLEER-VVYEVP--DDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTID 174 (386)
T ss_dssp EETTTEEEEEETTT--EE-EEEE----TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEE
T ss_pred EECCCeEEEEECCcCcEE-EEEECC--cccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEE
Confidence 776778999999986542 333222 333333444 34555543221 1 23455667
Q ss_pred CcCceeeeeEecCcccceeEEEEeeCCCcEEEEeec---CC-eEEEeeCCC-CCcceEEecCCCCCCCCCCcccCCCcee
Q 017194 132 IRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGL---DS-KLVMWDFSK-GRPNKIVNFGLPENNGNAGQCYNPAFVH 206 (375)
Q Consensus 132 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~---d~-~i~~wd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 206 (375)
+.+++....+. -...+..+.|+|..+.+++-|-+ +. .-++|-+++ +...+.+.... ....+.
T Consensus 175 l~tG~~~~v~~--~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~-----------~~e~~g 241 (386)
T PF14583_consen 175 LKTGERKVVFE--DTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRM-----------EGESVG 241 (386)
T ss_dssp TTT--EEEEEE--ESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS--------------TTEEEE
T ss_pred CCCCceeEEEe--cCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCC-----------CCcccc
Confidence 77777655555 45678899999988855555443 22 124554443 22222222110 112344
Q ss_pred EEeecCCccccCCCCEEEEEe-----cCCcEEEEeCCCcceeecccccCCCCCCceeecccccceeeeee
Q 017194 207 AIAIPDADMLDKTNKICVVAK-----GDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEI 271 (375)
Q Consensus 207 ~~~~~~~~~~~~~~~~l~~~~-----~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~ 271 (375)
.=-|.| +|..+.--+ .+..|.-+|+.++........ +...-+-.++||++++..|.
T Consensus 242 HEfw~~------DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~~~~~~---p~~~H~~ss~Dg~L~vGDG~ 302 (386)
T PF14583_consen 242 HEFWVP------DGSTIWYDSYTPGGQDFWIAGYDPDTGERRRLMEM---PWCSHFMSSPDGKLFVGDGG 302 (386)
T ss_dssp EEEE-T------TSS-EEEEEEETTT--EEEEEE-TTT--EEEEEEE----SEEEEEE-TTSSEEEEEE-
T ss_pred cccccC------CCCEEEEEeecCCCCceEEEeeCCCCCCceEEEeC---CceeeeEEcCCCCEEEecCC
Confidence 445666 676655432 233567778877654332111 12334556788888876443
No 355
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=98.20 E-value=0.00033 Score=55.20 Aligned_cols=177 Identities=10% Similarity=0.080 Sum_probs=97.3
Q ss_pred CcccceeEEEEeeCCCcEEEEeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEE
Q 017194 144 GHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKIC 223 (375)
Q Consensus 144 ~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l 223 (375)
+-...+.+++|.|+.+.++++....+.|..+++ +|+.+..+.+. .....-.|++.. ++.++
T Consensus 19 g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~------------g~~D~EgI~y~g------~~~~v 79 (248)
T PF06977_consen 19 GILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLD------------GFGDYEGITYLG------NGRYV 79 (248)
T ss_dssp T--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-S------------S-SSEEEEEE-S------TTEEE
T ss_pred CccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCC------------CCCCceeEEEEC------CCEEE
Confidence 455579999999987767788888999999997 48888888765 234567888875 56666
Q ss_pred EEEecCCcEEEEeCCCcceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEee-eee-cCCCccEEEEEEeec
Q 017194 224 VVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLD-YSV-GGHTAAASCVAFSMF 301 (375)
Q Consensus 224 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~v~~~~~s~~ 301 (375)
++.-.++.+.++++........ ....+.+ ..+ ..++..+-.++|.
T Consensus 80 l~~Er~~~L~~~~~~~~~~~~~-------------------------------~~~~~~~~l~~~~~~N~G~EGla~D-- 126 (248)
T PF06977_consen 80 LSEERDQRLYIFTIDDDTTSLD-------------------------------RADVQKISLGFPNKGNKGFEGLAYD-- 126 (248)
T ss_dssp EEETTTTEEEEEEE----TT---------------------------------EEEEEEEE---S---SS--EEEEEE--
T ss_pred EEEcCCCcEEEEEEeccccccc-------------------------------hhhceEEecccccCCCcceEEEEEc--
Confidence 6555688999998854211000 0000100 011 2356678999999
Q ss_pred CCCCcEEEEecCCCeEEEEeCCC---ceeeeecchhhhhhhhcccccceeeeeecCCCCCcEEEeeCCCeEEEEec
Q 017194 302 GERGKYLISGGNDKLVKVWDCSR---FQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSI 374 (375)
Q Consensus 302 ~~~~~~l~s~~~dg~i~iwd~~~---~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~iw~~ 374 (375)
+.++.|+.+-+..-..+|.+.. ......... ..+.........+.+++++|..+++++..+.+..|..+|.
T Consensus 127 -~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d~ 200 (248)
T PF06977_consen 127 -PKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDD-QDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELDR 200 (248)
T ss_dssp -TTTTEEEEEEESSSEEEEEEESTT-SS--EEEE--HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE-T
T ss_pred -CCCCEEEEEeCCCChhhEEEccccCccceeeccc-cccccccceeccccceEEcCCCCeEEEEECCCCeEEEECC
Confidence 7766666666665566666654 111100000 1111122344457888999988888888888888777663
No 356
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=98.18 E-value=0.0011 Score=56.31 Aligned_cols=164 Identities=13% Similarity=0.098 Sum_probs=90.6
Q ss_pred CCceeEEEEecCCCCEEEEeCCCCcEEEEecccCceeeEee-ec----------------CccEEEEEEeCCCCeEEEEc
Q 017194 15 KATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTD-VG----------------NGPVTSLCFKSGNEDIIYVS 77 (375)
Q Consensus 15 ~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~-~~----------------~~~v~~l~~~~~~~~l~~~~ 77 (375)
...+....|+|+ ++.+|-.. ++.|.+++..+++..+.-. +. -+.-..+-|+||+++|+...
T Consensus 42 ~~~~~~~~~sP~-g~~~~~v~-~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~ 119 (353)
T PF00930_consen 42 PPKLQDAKWSPD-GKYIAFVR-DNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLR 119 (353)
T ss_dssp ETTBSEEEE-SS-STEEEEEE-TTEEEEESSTTSEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEE
T ss_pred ccccccceeecC-CCeeEEEe-cCceEEEECCCCCeEEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEE
Confidence 567888999999 78887765 4679999987774432211 10 11235688999999988764
Q ss_pred CCC------------------------------------eEEEEECCCCCccc--ccccccCCCcceeEEEEcCCCCeEE
Q 017194 78 SGK------------------------------------EVKSFDVHMPASWR--PLESYNYNKEEINQIVCNPKSSFLA 119 (375)
Q Consensus 78 ~d~------------------------------------~i~iwd~~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~ 119 (375)
.|. .+.++|+.+++... ...........+..+.|.++++.|+
T Consensus 120 ~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~ 199 (353)
T PF00930_consen 120 FDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLW 199 (353)
T ss_dssp EE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEE
T ss_pred ECCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEE
Confidence 331 24444554443211 0101112245677889999888444
Q ss_pred EEe--CC---CcEEEEeCcCceeeeeEecCcccce---eEEEEe-eCCCcEEEEeecCCe--EEEeeCCCCC
Q 017194 120 CAD--DG---GDVKIIDIRQHCLYKSLRAGHSSIC---SSVQFI-PWKPWEVISGGLDSK--LVMWDFSKGR 180 (375)
Q Consensus 120 ~~~--~d---g~i~iwd~~~~~~~~~~~~~~~~~v---~~~~~~-~~~~~~l~~~~~d~~--i~~wd~~~~~ 180 (375)
..- .+ ..+.++|..+++....+.......| ....|. +++..++.....+|. |.+++...+.
T Consensus 200 ~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~ 271 (353)
T PF00930_consen 200 VQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGK 271 (353)
T ss_dssp EEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSE
T ss_pred EEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEcccccc
Confidence 433 22 2366778776644333331223332 355665 666656666667774 5555655444
No 357
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.13 E-value=1.4e-05 Score=68.48 Aligned_cols=95 Identities=13% Similarity=0.148 Sum_probs=77.3
Q ss_pred CccEEEEEEeCCCCeEEEEcCCCeEEEEECCCCCcccccccccCCCccee-EEEEcCCCCeEEEEeCCCcEEEEeCcCce
Q 017194 58 NGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEIN-QIVCNPKSSFLACADDGGDVKIIDIRQHC 136 (375)
Q Consensus 58 ~~~v~~l~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 136 (375)
...|.-+.|+|.-..+|.+..+|.+.+..+. ++.+-.++-|...++ +++|.|||+.|++|-.||+|++.|++++.
T Consensus 20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n----~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~ 95 (665)
T KOG4640|consen 20 PINIKRIEWNPKMDLIATRTEKGELLIHRLN----WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGG 95 (665)
T ss_pred ccceEEEEEcCccchhheeccCCcEEEEEec----cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCC
Confidence 3567889999999999999999999999887 455556654566676 99999999999999999999999999988
Q ss_pred eeeeEecCcccceeEEEEee
Q 017194 137 LYKSLRAGHSSICSSVQFIP 156 (375)
Q Consensus 137 ~~~~~~~~~~~~v~~~~~~~ 156 (375)
.+..+...-...|.++.|.+
T Consensus 96 ~l~~~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 96 RLVSFLFSVETDISKGIWDR 115 (665)
T ss_pred ceeccccccccchheeeccc
Confidence 77663213456788888864
No 358
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=98.09 E-value=0.0038 Score=51.20 Aligned_cols=150 Identities=15% Similarity=0.113 Sum_probs=89.9
Q ss_pred EEecCCCCEEEEeCCCCcEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEEcCCCeEEEEECCCCCcccccccc-c
Q 017194 22 IASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESY-N 100 (375)
Q Consensus 22 ~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~-~ 100 (375)
.|.++.+.++.+--..+.|.-|+..+++. ..+. +...+.++.....+..|+++. ..+.+++.+++.....+... .
T Consensus 31 ~w~~~~~~L~w~DI~~~~i~r~~~~~g~~-~~~~-~p~~~~~~~~~d~~g~Lv~~~--~g~~~~~~~~~~~~t~~~~~~~ 106 (307)
T COG3386 31 VWDPDRGALLWVDILGGRIHRLDPETGKK-RVFP-SPGGFSSGALIDAGGRLIACE--HGVRLLDPDTGGKITLLAEPED 106 (307)
T ss_pred cCcCCCCEEEEEeCCCCeEEEecCCcCce-EEEE-CCCCcccceeecCCCeEEEEc--cccEEEeccCCceeEEeccccC
Confidence 56777444666666778899999876653 3333 234445555544454555544 34566676554432222221 1
Q ss_pred C-CCcceeEEEEcCCCCeEEEEeC-----------CCcEEEEeCcCceeeeeEecCcccceeEEEEeeCCCcEEEEeecC
Q 017194 101 Y-NKEEINQIVCNPKSSFLACADD-----------GGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLD 168 (375)
Q Consensus 101 ~-~~~~v~~~~~~~~~~~l~~~~~-----------dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d 168 (375)
+ .....+.+...|+|.+.+.... -|.++.+|. .+..++.+. .+-..-+.|+|+|+++.++++=+..
T Consensus 107 ~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~-~~~~~~NGla~SpDg~tly~aDT~~ 184 (307)
T COG3386 107 GLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLD-DDLTIPNGLAFSPDGKTLYVADTPA 184 (307)
T ss_pred CCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeec-CcEEecCceEECCCCCEEEEEeCCC
Confidence 1 1245677888999876654433 133444443 455655555 5566778999999998555555566
Q ss_pred CeEEEeeCC
Q 017194 169 SKLVMWDFS 177 (375)
Q Consensus 169 ~~i~~wd~~ 177 (375)
+.|.-|++.
T Consensus 185 ~~i~r~~~d 193 (307)
T COG3386 185 NRIHRYDLD 193 (307)
T ss_pred CeEEEEecC
Confidence 888888876
No 359
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=98.08 E-value=0.00082 Score=44.84 Aligned_cols=103 Identities=10% Similarity=0.096 Sum_probs=72.6
Q ss_pred eeEEEEcC---CC-CeEEEEeCCCcEEEEeCcCceeeeeEecCcccceeEEEEeeCCCcEEEEeecCCeEEEeeCCCCCc
Q 017194 106 INQIVCNP---KS-SFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRP 181 (375)
Q Consensus 106 v~~~~~~~---~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~ 181 (375)
|+++++.. +| +.|++|+.|..|++|+ ..+.+..+. ....|.++.-...+ .|+.+..+|+|-+|+- .+.
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~--~~e~~~Ei~--e~~~v~~L~~~~~~--~F~Y~l~NGTVGvY~~--~~R 73 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFK--GDEIVAEIT--ETDKVTSLCSLGGG--RFAYALANGTVGVYDR--SQR 73 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEe--CCcEEEEEe--cccceEEEEEcCCC--EEEEEecCCEEEEEeC--cce
Confidence 45555544 33 5799999999999998 456777776 45678888877765 6999999999999985 344
Q ss_pred ceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCC-CCEEEEEecCCcEE
Q 017194 182 NKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKT-NKICVVAKGDGVVD 233 (375)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~~l~~~~~dg~i~ 233 (375)
+..++ ....+.++++... +.+ ...|++|-.+|.|-
T Consensus 74 lWRiK--------------SK~~~~~~~~~D~---~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 74 LWRIK--------------SKNQVTSMAFYDI---NGDGVPELIVGWSNGKVE 109 (111)
T ss_pred eeeec--------------cCCCeEEEEEEcC---CCCCceEEEEEecCCeEE
Confidence 55555 2355777776653 111 23688888888764
No 360
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.07 E-value=2.6e-05 Score=67.00 Aligned_cols=94 Identities=13% Similarity=0.104 Sum_probs=77.0
Q ss_pred CceeEEEEecCCCCEEEEeCCCCcEEEEecccCceeeEeeecCccEE-EEEEeCCCCeEEEEcCCCeEEEEECCCCCccc
Q 017194 16 ATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVT-SLCFKSGNEDIIYVSSGKEVKSFDVHMPASWR 94 (375)
Q Consensus 16 ~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~v~-~l~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~ 94 (375)
-.|.-+.|+|. -.++|.+..+|.|.+..++ .+.+.++..|+..++ +++|.|||+.|+.|-.||+|++.|++++..+.
T Consensus 21 ~~i~~~ewnP~-~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~ 98 (665)
T KOG4640|consen 21 INIKRIEWNPK-MDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLV 98 (665)
T ss_pred cceEEEEEcCc-cchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCcee
Confidence 45777899998 8999999999999999988 777888887888888 99999999999999999999999999876544
Q ss_pred ccccccCCCcceeEEEEcC
Q 017194 95 PLESYNYNKEEINQIVCNP 113 (375)
Q Consensus 95 ~~~~~~~~~~~v~~~~~~~ 113 (375)
...- .....|.++-|.+
T Consensus 99 ~~~~--s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 99 SFLF--SVETDISKGIWDR 115 (665)
T ss_pred cccc--ccccchheeeccc
Confidence 3211 1145777777763
No 361
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=98.07 E-value=8.6e-06 Score=43.58 Aligned_cols=39 Identities=31% Similarity=0.475 Sum_probs=34.4
Q ss_pred CCCCeeeecCCCceeEEEEecCCCCEEEEeCCCCcEEEEe
Q 017194 5 EAKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFD 44 (375)
Q Consensus 5 ~~~~~~l~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~ 44 (375)
.+....+..|...|.++.|.+. +.++++++.|+.+++|+
T Consensus 2 ~~~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 2 GELLKTLKGHTGPVTSVAFSPD-GKYLASASDDGTIKLWD 40 (40)
T ss_pred cEEEEEEEecCCceeEEEECCC-CCEEEEecCCCeEEEcC
Confidence 3456778899999999999998 78999999999999996
No 362
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.05 E-value=0.0035 Score=55.69 Aligned_cols=194 Identities=11% Similarity=0.088 Sum_probs=114.3
Q ss_pred CCCcEEEEecccCceeeEeeecCc--------------------cE-EEEEEeCCCCeEEEEcCCC--------------
Q 017194 36 EDGCICWFDLRSKDVQLVTDVGNG--------------------PV-TSLCFKSGNEDIIYVSSGK-------------- 80 (375)
Q Consensus 36 ~d~~i~iw~~~~~~~~~~~~~~~~--------------------~v-~~l~~~~~~~~l~~~~~d~-------------- 80 (375)
.+|.+..+|.++|+.+-..+.... .+ ...++.+.+..++.++.++
T Consensus 173 ~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~ 252 (488)
T cd00216 173 VRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDN 252 (488)
T ss_pred CCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCC
Confidence 367889999999998776654211 01 1234444556677776554
Q ss_pred ----eEEEEECCCCCccccccccc-------CCCcce-eEEEEcCCCC---eEEEEeCCCcEEEEeCcCceeeeeEecCc
Q 017194 81 ----EVKSFDVHMPASWRPLESYN-------YNKEEI-NQIVCNPKSS---FLACADDGGDVKIIDIRQHCLYKSLRAGH 145 (375)
Q Consensus 81 ----~i~iwd~~~~~~~~~~~~~~-------~~~~~v-~~~~~~~~~~---~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 145 (375)
.|.-+|.++++..-..+... ....++ ..+. .-++. .+++++.+|.+...|.++++.+-... ..
T Consensus 253 ~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~-~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~-~~ 330 (488)
T cd00216 253 LYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIK-PKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARP-EV 330 (488)
T ss_pred CceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEecc-ccCCCeeEEEEEECCCceEEEEECCCCcEeeEeE-ee
Confidence 78899999887654433211 000111 1110 01232 57888899999999999999887665 11
Q ss_pred ccceeEEEEeeCCCcEEEEe------------------ecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeE
Q 017194 146 SSICSSVQFIPWKPWEVISG------------------GLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHA 207 (375)
Q Consensus 146 ~~~v~~~~~~~~~~~~l~~~------------------~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 207 (375)
...++..| + .+..+ ..+|.+.-.|+.+++.+.+............. .+.....
T Consensus 331 ---~~~~~~~~-~--~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g---~~~~~~~ 401 (488)
T cd00216 331 ---EQPMAYDP-G--LVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIG---FPHWGGS 401 (488)
T ss_pred ---ccccccCC-c--eEEEccccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccC---CcccCcc
Confidence 12233444 2 23222 24688999999999988877643000000000 0000112
Q ss_pred EeecCCccccCCCCEEEEEecCCcEEEEeCCCcceeecccc
Q 017194 208 IAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKS 248 (375)
Q Consensus 208 ~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~ 248 (375)
+.. .+..+++++.||.|+.+|..+++...+...
T Consensus 402 ~~~--------~g~~v~~g~~dG~l~ald~~tG~~lW~~~~ 434 (488)
T cd00216 402 LAT--------AGNLVFAGAADGYFRAFDATTGKELWKFRT 434 (488)
T ss_pred eEe--------cCCeEEEECCCCeEEEEECCCCceeeEEEC
Confidence 222 467899999999999999999987776544
No 363
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.05 E-value=0.0031 Score=49.41 Aligned_cols=210 Identities=9% Similarity=0.067 Sum_probs=122.4
Q ss_pred eeEEEEecCCCCEEEEeCCCCc-EEEEecccCceeeEeeecCcc--EEEEEEeCCCCeEEEEcCC-----CeEEEEECCC
Q 017194 18 ATCCIASRDRPGFVASSGEDGC-ICWFDLRSKDVQLVTDVGNGP--VTSLCFKSGNEDIIYVSSG-----KEVKSFDVHM 89 (375)
Q Consensus 18 i~~~~~~~~~~~~l~s~~~d~~-i~iw~~~~~~~~~~~~~~~~~--v~~l~~~~~~~~l~~~~~d-----~~i~iwd~~~ 89 (375)
-..++++|.-..-++-+-.-|+ ..++|.+..+...++...++. --.=.|+|||.+|.+.-.| |.|-|||.+.
T Consensus 70 ~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~ 149 (366)
T COG3490 70 GHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDARE 149 (366)
T ss_pred cCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEeccc
Confidence 3456777775566666666555 567888887776665432221 1123689999988876554 6899999883
Q ss_pred CCcccccccccCCCcceeEEEEcCCCCeEEEEeC------------------CCcEEEEeCcCceeeeeEec---Ccccc
Q 017194 90 PASWRPLESYNYNKEEINQIVCNPKSSFLACADD------------------GGDVKIIDIRQHCLYKSLRA---GHSSI 148 (375)
Q Consensus 90 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~------------------dg~i~iwd~~~~~~~~~~~~---~~~~~ 148 (375)
..+.+..+..|.-.-..+.+.+||+.++.+.. .-.+.+.|..+++.+.+... .+...
T Consensus 150 --~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~lS 227 (366)
T COG3490 150 --GFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQLS 227 (366)
T ss_pred --ccceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCchhhhhcc
Confidence 45677777777777888999999999887642 11233344344444332210 23456
Q ss_pred eeEEEEeeCCCcEEEEeecCCe-----EEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEE
Q 017194 149 CSSVQFIPWKPWEVISGGLDSK-----LVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKIC 223 (375)
Q Consensus 149 v~~~~~~~~~~~~l~~~~~d~~-----i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l 223 (375)
+..++..++|. +++.+-..|. -.+=-...+++++-+.... .........|-+|+.+.. ++-..
T Consensus 228 iRHld~g~dgt-vwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pe------e~~~~~anYigsiA~n~~-----~glV~ 295 (366)
T COG3490 228 IRHLDIGRDGT-VWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPE------EQTAAFANYIGSIAANRR-----DGLVA 295 (366)
T ss_pred eeeeeeCCCCc-EEEEEEeeCCCccCCcceeeccCCCcCcccCCCH------HHHHHHHhhhhheeeccc-----CCeEE
Confidence 78888888886 4444433221 1111122344444333220 000001245677888752 33334
Q ss_pred EEEecCCcEEEEeCCCcc
Q 017194 224 VVAKGDGVVDVINIESEL 241 (375)
Q Consensus 224 ~~~~~dg~i~i~d~~~~~ 241 (375)
+++-..+...+||..++.
T Consensus 296 lTSP~GN~~vi~da~tG~ 313 (366)
T COG3490 296 LTSPRGNRAVIWDAATGA 313 (366)
T ss_pred EecCCCCeEEEEEcCCCc
Confidence 444455678899999864
No 364
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.03 E-value=0.00018 Score=60.89 Aligned_cols=142 Identities=12% Similarity=0.148 Sum_probs=99.5
Q ss_pred EEEEeCCCCcEEEEecccCceeeEeeecCccEEEEEEeCCCCe-------EEEEcCCCeEEEEECCCCCcccccccccCC
Q 017194 30 FVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNED-------IIYVSSGKEVKSFDVHMPASWRPLESYNYN 102 (375)
Q Consensus 30 ~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~-------l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~ 102 (375)
+|.++.....++-.|++.|+.+.....+.. |+-+.+.|+.+. -+.|-.++.|+-||.+-... ..+....+|
T Consensus 348 il~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~-~kl~~~q~k 425 (644)
T KOG2395|consen 348 ILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGK-NKLAVVQSK 425 (644)
T ss_pred EeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCc-ceeeeeecc
Confidence 345566667788889999999999987766 777888886532 24466688999999874322 111111111
Q ss_pred ----CcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCceeeeeEecCcccceeEEEEeeCCCcEEEEeecCCeEEEeeCC
Q 017194 103 ----KEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFS 177 (375)
Q Consensus 103 ----~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~ 177 (375)
.....|.+-..+| +|++|+.+|.|++||--..+....++ +...+|..+..+.+|+++|+ +.+..+.+.++.
T Consensus 426 qy~~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdri~~~AKTAlP-gLG~~I~hVdvtadGKwil~--Tc~tyLlLi~t~ 500 (644)
T KOG2395|consen 426 QYSTKNNFSCFATTESG-YIVVGSLKGDIRLYDRIGRRAKTALP-GLGDAIKHVDVTADGKWILA--TCKTYLLLIDTL 500 (644)
T ss_pred ccccccccceeeecCCc-eEEEeecCCcEEeehhhhhhhhhccc-ccCCceeeEEeeccCcEEEE--ecccEEEEEEEe
Confidence 3345666666666 89999999999999964334455566 88899999999999985444 445677777764
No 365
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=98.00 E-value=0.0035 Score=56.49 Aligned_cols=184 Identities=16% Similarity=0.168 Sum_probs=102.6
Q ss_pred CCEEEEeCCCC------cEEEEecccCceeeEeee-cCccEEEEEEeCCCCeEEEEcCC------CeEEEEECCCCCccc
Q 017194 28 PGFVASSGEDG------CICWFDLRSKDVQLVTDV-GNGPVTSLCFKSGNEDIIYVSSG------KEVKSFDVHMPASWR 94 (375)
Q Consensus 28 ~~~l~s~~~d~------~i~iw~~~~~~~~~~~~~-~~~~v~~l~~~~~~~~l~~~~~d------~~i~iwd~~~~~~~~ 94 (375)
+.+++.||.++ .+..+|..+++-.....- ....-.+++.. ++...++|+.+ .++..||..+++ +.
T Consensus 285 ~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~~-W~ 362 (571)
T KOG4441|consen 285 GKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTNQ-WT 362 (571)
T ss_pred CeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEE-CCEEEEEccccCCCcccceEEEecCCCCc-ee
Confidence 56777887773 688888887753222211 22233444444 45677888888 368888888664 55
Q ss_pred ccccccCCCcceeEEEEcCCCCeEEEEeCCCc-----EEEEeCcCcee--eeeEecCcccceeEEEEee-CCCcEEEEee
Q 017194 95 PLESYNYNKEEINQIVCNPKSSFLACADDGGD-----VKIIDIRQHCL--YKSLRAGHSSICSSVQFIP-WKPWEVISGG 166 (375)
Q Consensus 95 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~-----i~iwd~~~~~~--~~~~~~~~~~~v~~~~~~~-~~~~~l~~~~ 166 (375)
.+............. .-+|...++|+.||. +..||.++.+- +..+. .......... +|. +.++|+
T Consensus 363 ~~a~M~~~R~~~~v~--~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~----~~r~~~gv~~~~g~-iYi~GG 435 (571)
T KOG4441|consen 363 PVAPMNTKRSDFGVA--VLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPML----TRRSGHGVAVLGGK-LYIIGG 435 (571)
T ss_pred ccCCccCccccceeE--EECCEEEEEeccccccccccEEEecCCCCcccccCCCC----cceeeeEEEEECCE-EEEEcC
Confidence 544443212122111 226778888988864 77788765432 22222 1222222222 344 778887
Q ss_pred cCC------eEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCc-----EEEE
Q 017194 167 LDS------KLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGV-----VDVI 235 (375)
Q Consensus 167 ~d~------~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~-----i~i~ 235 (375)
.++ ++..||..+++....-... ....-..++.- ++.+.++|+.|+. +..|
T Consensus 436 ~~~~~~~l~sve~YDP~t~~W~~~~~M~------------~~R~~~g~a~~-------~~~iYvvGG~~~~~~~~~VE~y 496 (571)
T KOG4441|consen 436 GDGSSNCLNSVECYDPETNTWTLIAPMN------------TRRSGFGVAVL-------NGKIYVVGGFDGTSALSSVERY 496 (571)
T ss_pred cCCCccccceEEEEcCCCCceeecCCcc------------cccccceEEEE-------CCEEEEECCccCCCccceEEEE
Confidence 554 5678888776543322221 11122234443 5888899987762 5667
Q ss_pred eCCC
Q 017194 236 NIES 239 (375)
Q Consensus 236 d~~~ 239 (375)
|..+
T Consensus 497 dp~~ 500 (571)
T KOG4441|consen 497 DPET 500 (571)
T ss_pred cCCC
Confidence 7765
No 366
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.97 E-value=0.00044 Score=63.17 Aligned_cols=149 Identities=15% Similarity=0.108 Sum_probs=94.9
Q ss_pred EEEE-eecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCc-cccCCCCEEEEEecCCcEEEEeCC
Q 017194 161 EVIS-GGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDAD-MLDKTNKICVVAKGDGVVDVINIE 238 (375)
Q Consensus 161 ~l~~-~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~l~~~~~dg~i~i~d~~ 238 (375)
+|+. ......|+-.|+..|+.+..+..+ ...+|. .+.|.. +..-+..-.++|-.++.+..||.+
T Consensus 495 mil~~~~~~~~ly~mDLe~GKVV~eW~~~------------~~~~v~--~~~p~~K~aqlt~e~tflGls~n~lfriDpR 560 (794)
T PF08553_consen 495 MILLDPNNPNKLYKMDLERGKVVEEWKVH------------DDIPVV--DIAPDSKFAQLTNEQTFLGLSDNSLFRIDPR 560 (794)
T ss_pred eEeecCCCCCceEEEecCCCcEEEEeecC------------CCccee--EecccccccccCCCceEEEECCCceEEeccC
Confidence 4444 345678999999999999999976 222233 333321 111123445677778899999999
Q ss_pred CcceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEecCCCeEE
Q 017194 239 SELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVK 318 (375)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~dg~i~ 318 (375)
-...... ....+.+ .......|++-+ .+| +||.|+.+|.||
T Consensus 561 ~~~~k~v----------------------------------~~~~k~Y-~~~~~Fs~~aTt---~~G-~iavgs~~G~IR 601 (794)
T PF08553_consen 561 LSGNKLV----------------------------------DSQSKQY-SSKNNFSCFATT---EDG-YIAVGSNKGDIR 601 (794)
T ss_pred CCCCcee----------------------------------ecccccc-ccCCCceEEEec---CCc-eEEEEeCCCcEE
Confidence 5210000 0000111 234456777776 555 899999999999
Q ss_pred EEeCCCceeeeecchhhhhhhhcccccceeeeeecCCCCCcEEEeeCCCeEEEEe
Q 017194 319 VWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYS 373 (375)
Q Consensus 319 iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~iw~ 373 (375)
+||--.. ..-..+.+...+|..|+.+. ||++|++.+.. .|.+++
T Consensus 602 Lyd~~g~---------~AKT~lp~lG~pI~~iDvt~-DGkwilaTc~t-yLlLi~ 645 (794)
T PF08553_consen 602 LYDRLGK---------RAKTALPGLGDPIIGIDVTA-DGKWILATCKT-YLLLID 645 (794)
T ss_pred eecccch---------hhhhcCCCCCCCeeEEEecC-CCcEEEEeecc-eEEEEE
Confidence 9994332 44445667889999999999 99988776643 454443
No 367
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.97 E-value=0.0026 Score=54.87 Aligned_cols=187 Identities=9% Similarity=-0.035 Sum_probs=100.8
Q ss_pred cCCCCCeeeecCCCceeEEEEecCCCCEEEEeCCCCcEEEEecccCce-------eeEeeecCccEEEEEEeCCCCeEEE
Q 017194 3 DAEAKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDV-------QLVTDVGNGPVTSLCFKSGNEDIIY 75 (375)
Q Consensus 3 ~~~~~~~~l~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~-------~~~~~~~~~~v~~l~~~~~~~~l~~ 75 (375)
..|+++.++.--.+.|.++.|+.+ +.|+.-..||.++++|+. |+. +.........+....+..+| ++.
T Consensus 68 ~sG~ll~~i~w~~~~iv~~~wt~~--e~LvvV~~dG~v~vy~~~-G~~~fsl~~~i~~~~v~e~~i~~~~~~~~G--ivv 142 (410)
T PF04841_consen 68 SSGKLLSSIPWDSGRIVGMGWTDD--EELVVVQSDGTVRVYDLF-GEFQFSLGEEIEEEKVLECRIFAIWFYKNG--IVV 142 (410)
T ss_pred CCCCEeEEEEECCCCEEEEEECCC--CeEEEEEcCCEEEEEeCC-CceeechhhhccccCcccccccccccCCCC--EEE
Confidence 456666666544588999999876 456666789999999986 333 11111112223333444455 333
Q ss_pred EcCCCeEEEEECCCCC-cccccccccCCCc------ceeE-EEEcCCCCeEEEEeCCCcEEEEeCcCceeeeeEecCccc
Q 017194 76 VSSGKEVKSFDVHMPA-SWRPLESYNYNKE------EINQ-IVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSS 147 (375)
Q Consensus 76 ~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~------~v~~-~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 147 (375)
-..++.+.+.+-.... ..+.+........ .... ..++.+....+....++.+.+.+-...+. +. ..+
T Consensus 143 Lt~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~~---i~--~~~ 217 (410)
T PF04841_consen 143 LTGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSFKQ---ID--SDG 217 (410)
T ss_pred ECCCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEcccccc---cc--CCC
Confidence 3445555444322211 1111111110000 0000 22333444444444445555443222111 22 346
Q ss_pred ceeEEEEeeCCCcEEEEeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecC
Q 017194 148 ICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPD 212 (375)
Q Consensus 148 ~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 212 (375)
++..|+.+|+++ +++.-..+|.+.+.+..-.+....+... .......+.|.-
T Consensus 218 ~i~~iavSpng~-~iAl~t~~g~l~v~ssDf~~~~~e~~~~------------~~~~p~~~~WCG 269 (410)
T PF04841_consen 218 PIIKIAVSPNGK-FIALFTDSGNLWVVSSDFSEKLCEFDTD------------SKSPPKQMAWCG 269 (410)
T ss_pred CeEEEEECCCCC-EEEEEECCCCEEEEECcccceeEEeecC------------cCCCCcEEEEEC
Confidence 899999999999 7888888999999987766666666644 234556777764
No 368
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=97.95 E-value=0.0049 Score=51.87 Aligned_cols=237 Identities=12% Similarity=0.089 Sum_probs=105.7
Q ss_pred CCEEEEeC-CCCcEEEEecccC----ceeeEeee---cC----ccEEEEEEeCCCCeEEEEcCC------CeEEEEECCC
Q 017194 28 PGFVASSG-EDGCICWFDLRSK----DVQLVTDV---GN----GPVTSLCFKSGNEDIIYVSSG------KEVKSFDVHM 89 (375)
Q Consensus 28 ~~~l~s~~-~d~~i~iw~~~~~----~~~~~~~~---~~----~~v~~l~~~~~~~~l~~~~~d------~~i~iwd~~~ 89 (375)
.++|+..+ ..+.|.|.|+.+. +..+.++. +. .....+.--|+|+.++++-.| |-+.+.|-++
T Consensus 87 Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~t 166 (461)
T PF05694_consen 87 RRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGET 166 (461)
T ss_dssp S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TTT
T ss_pred CCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCcc
Confidence 35555554 6788999998743 33444442 11 112223334788888775322 4677878765
Q ss_pred CCcccccccccCCCcceeEEEEcCCCCeEEEEeC--------------------CCcEEEEeCcCceeeeeEecCccc-c
Q 017194 90 PASWRPLESYNYNKEEINQIVCNPKSSFLACADD--------------------GGDVKIIDIRQHCLYKSLRAGHSS-I 148 (375)
Q Consensus 90 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--------------------dg~i~iwd~~~~~~~~~~~~~~~~-~ 148 (375)
-+....-..-.....--..+-|.|..+.+++... ..++.+||+.+.+.++++..+..+ .
T Consensus 167 f~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~~ 246 (461)
T PF05694_consen 167 FEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQM 246 (461)
T ss_dssp --EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEEE
T ss_pred ccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCCCc
Confidence 3322222221111233456777887777777642 357999999999999999843332 4
Q ss_pred eeEEEEeeC--CCcEEEEeecCCeEEEeeC-CCCC--cceEEecCCCCCCCCC------CcccCCCceeEEeecCCcccc
Q 017194 149 CSSVQFIPW--KPWEVISGGLDSKLVMWDF-SKGR--PNKIVNFGLPENNGNA------GQCYNPAFVHAIAIPDADMLD 217 (375)
Q Consensus 149 v~~~~~~~~--~~~~l~~~~~d~~i~~wd~-~~~~--~~~~~~~~~~~~~~~~------~~~~~~~~v~~~~~~~~~~~~ 217 (375)
+..+.|..+ ..+-|+.+...++|..|-- ..++ ..+.+..+.+...... ....-+.-++.|.+|.
T Consensus 247 pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSl----- 321 (461)
T PF05694_consen 247 PLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISL----- 321 (461)
T ss_dssp EEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-T-----
T ss_pred eEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEcc-----
Confidence 556777544 4434555555566665544 3332 1222222211110000 0000135678888988
Q ss_pred CCCCEEEEEe-cCCcEEEEeCCCcceeecccc------------------cCCCCCCceeecccccceeeee
Q 017194 218 KTNKICVVAK-GDGVVDVINIESELNISRSKS------------------TTKPLKGSQSTSKVNIRDAEME 270 (375)
Q Consensus 218 ~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~------------------~~~~~~~~~~~s~~g~~~~~~~ 270 (375)
|.++|.+.+ ..|.|+.||+.....+..... ........+.+|.||+.+.+..
T Consensus 322 -DDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvTn 392 (461)
T PF05694_consen 322 -DDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVTN 392 (461)
T ss_dssp -TS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEEE-
T ss_pred -CCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEEEe
Confidence 788888777 689999999987554432211 1112346678889998887543
No 369
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=97.94 E-value=6.6e-06 Score=61.61 Aligned_cols=63 Identities=14% Similarity=0.121 Sum_probs=45.6
Q ss_pred CCCcEEEEecCCCeEEEEeCCCceeeeecchhhhhhhhcccc-cceeeeeecCCCCCcEEEe--eCCCeEEEEecC
Q 017194 303 ERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLN-KKVNWLCTTPTESENLVVC--DTSKVVKVYSIS 375 (375)
Q Consensus 303 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~l~s~--~~dg~v~iw~~~ 375 (375)
.++.+..+++.||.|+.|++... +.+.....|. .++..+..+. .+++|+++ |.|..++.|+++
T Consensus 112 ~~~~~~c~~~~dg~ir~~n~~p~---------k~~g~~g~h~~~~~e~~ivv~-sd~~i~~a~~S~d~~~k~W~ve 177 (238)
T KOG2444|consen 112 RDSSLGCVGAQDGRIRACNIKPN---------KVLGYVGQHNFESGEELIVVG-SDEFLKIADTSHDRVLKKWNVE 177 (238)
T ss_pred cccceeEEeccCCceeeeccccC---------ceeeeeccccCCCcceeEEec-CCceEEeeccccchhhhhcchh
Confidence 45568889999999999999987 4454555566 4555555555 55677777 788888888764
No 370
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.93 E-value=0.0058 Score=47.99 Aligned_cols=102 Identities=13% Similarity=0.114 Sum_probs=65.7
Q ss_pred EEEEEEeCCCCe-EEEEcCCC-eEEEEECCCCCcccccccccCCCcceeEEEEcCCCCeEEEEeCC-----CcEEEEeCc
Q 017194 61 VTSLCFKSGNED-IIYVSSGK-EVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDG-----GDVKIIDIR 133 (375)
Q Consensus 61 v~~l~~~~~~~~-l~~~~~d~-~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~iwd~~ 133 (375)
-..++|+|.... ++.+-.-| ...++|....+....+...++ ..-.-.=.|+|||.+|+..-.| |.|-+||.+
T Consensus 70 ~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~-RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r 148 (366)
T COG3490 70 GHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEG-RHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDAR 148 (366)
T ss_pred cCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccC-ceeecccccCCCCcEEEeecCCCCCCCceEEEEecc
Confidence 345777775543 44444444 467889887665544433221 0111223699999999877543 679999987
Q ss_pred Cc-eeeeeEecCcccceeEEEEeeCCCcEEEEe
Q 017194 134 QH-CLYKSLRAGHSSICSSVQFIPWKPWEVISG 165 (375)
Q Consensus 134 ~~-~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~ 165 (375)
.+ +.+..+. .|.-..-.+.+.+||+ .++.+
T Consensus 149 ~~fqrvgE~~-t~GiGpHev~lm~DGr-tlvva 179 (366)
T COG3490 149 EGFQRVGEFS-THGIGPHEVTLMADGR-TLVVA 179 (366)
T ss_pred cccceecccc-cCCcCcceeEEecCCc-EEEEe
Confidence 54 4566777 7777778899999998 45554
No 371
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.92 E-value=0.002 Score=43.04 Aligned_cols=101 Identities=19% Similarity=0.185 Sum_probs=68.1
Q ss_pred eeEEEEec---CCCCEEEEeCCCCcEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEEcCCCeEEEEECCCCCccc
Q 017194 18 ATCCIASR---DRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWR 94 (375)
Q Consensus 18 i~~~~~~~---~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~ 94 (375)
|++|++.. ++.+.|+.|+.|..|++|+-+ +.+..+.. .+.|.+|.-... ..++.+-.+|+|-+|+-.. ..-
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei~e-~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~~--RlW 75 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD--EIVAEITE-TDKVTSLCSLGG-GRFAYALANGTVGVYDRSQ--RLW 75 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCC--cEEEEEec-ccceEEEEEcCC-CEEEEEecCCEEEEEeCcc--eee
Confidence 55665544 444689999999999999843 55666664 567888877765 5689999999999998542 222
Q ss_pred ccccccCCCcceeEEEEcC---CC-CeEEEEeCCCcEE
Q 017194 95 PLESYNYNKEEINQIVCNP---KS-SFLACADDGGDVK 128 (375)
Q Consensus 95 ~~~~~~~~~~~v~~~~~~~---~~-~~l~~~~~dg~i~ 128 (375)
.++. +..+.++.+.. || ..|++|-.+|.|-
T Consensus 76 RiKS----K~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 76 RIKS----KNQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred eecc----CCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 2332 33466665543 23 3588888888764
No 372
>PHA02713 hypothetical protein; Provisional
Probab=97.92 E-value=0.0052 Score=55.46 Aligned_cols=92 Identities=12% Similarity=0.131 Sum_probs=47.2
Q ss_pred cEEEEecccCceee--EeeecCccEEEEEEeCCCCeEEEEcCC------CeEEEEECCCCCcccccccccCCCcceeEEE
Q 017194 39 CICWFDLRSKDVQL--VTDVGNGPVTSLCFKSGNEDIIYVSSG------KEVKSFDVHMPASWRPLESYNYNKEEINQIV 110 (375)
Q Consensus 39 ~i~iw~~~~~~~~~--~~~~~~~~v~~l~~~~~~~~l~~~~~d------~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~ 110 (375)
.+..||..+++-.. .+...... .+++. -++...+.|+.+ ..+..||..+.. +..+............
T Consensus 273 ~v~~yd~~~~~W~~l~~mp~~r~~-~~~a~-l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~-W~~~~~m~~~R~~~~~-- 347 (557)
T PHA02713 273 CILVYNINTMEYSVISTIPNHIIN-YASAI-VDNEIIIAGGYNFNNPSLNKVYKINIENKI-HVELPPMIKNRCRFSL-- 347 (557)
T ss_pred CEEEEeCCCCeEEECCCCCccccc-eEEEE-ECCEEEEEcCCCCCCCccceEEEEECCCCe-EeeCCCCcchhhceeE--
Confidence 56778877665321 22111111 12222 356666777753 357788887653 3333333211111111
Q ss_pred EcCCCCeEEEEeCCC-----cEEEEeCcCc
Q 017194 111 CNPKSSFLACADDGG-----DVKIIDIRQH 135 (375)
Q Consensus 111 ~~~~~~~l~~~~~dg-----~i~iwd~~~~ 135 (375)
..-+++..+.|+.++ .+..||..+.
T Consensus 348 ~~~~g~IYviGG~~~~~~~~sve~Ydp~~~ 377 (557)
T PHA02713 348 AVIDDTIYAIGGQNGTNVERTIECYTMGDD 377 (557)
T ss_pred EEECCEEEEECCcCCCCCCceEEEEECCCC
Confidence 223567777777654 4788998765
No 373
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=97.91 E-value=0.0038 Score=50.97 Aligned_cols=159 Identities=13% Similarity=0.073 Sum_probs=98.0
Q ss_pred cCCCCEEEEeCCCCcEEEEecc-cCceeeEee----ecCccEE-EEEEeCCCCeEEEEcCCCeEEEEECCCCCccccccc
Q 017194 25 RDRPGFVASSGEDGCICWFDLR-SKDVQLVTD----VGNGPVT-SLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLES 98 (375)
Q Consensus 25 ~~~~~~l~s~~~d~~i~iw~~~-~~~~~~~~~----~~~~~v~-~l~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~ 98 (375)
|.+++-+.+-+.||++.-..+. .|+...... ...+++. .-++...+..++-.+..|.|+--|+.... ......
T Consensus 144 P~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~-~~~~~~ 222 (342)
T PF06433_consen 144 PSGNRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDS-AKFGKP 222 (342)
T ss_dssp EEETTEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSS-EEEEEE
T ss_pred ecCCCceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCc-ccccCc
Confidence 3334567788889999999887 455432211 1122222 33445555566667889999888887532 121111
Q ss_pred ccC----------CCcceeEEEEcCCCCeEEEEeC---C-------CcEEEEeCcCceeeeeEecCcccceeEEEEeeCC
Q 017194 99 YNY----------NKEEINQIVCNPKSSFLACADD---G-------GDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWK 158 (375)
Q Consensus 99 ~~~----------~~~~v~~~~~~~~~~~l~~~~~---d-------g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~ 158 (375)
... -.+.-.-+++++..+.|++.-. + ..|.++|+.+++.+.++. -..++.+|+.+.+.
T Consensus 223 ~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~--l~~~~~Si~Vsqd~ 300 (342)
T PF06433_consen 223 WSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIP--LEHPIDSIAVSQDD 300 (342)
T ss_dssp EESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEE--EEEEESEEEEESSS
T ss_pred ccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEe--CCCccceEEEccCC
Confidence 110 1234456788876666555321 1 148899999999999987 35578899999987
Q ss_pred CcEEEEe-ecCCeEEEeeCCCCCcceEEe
Q 017194 159 PWEVISG-GLDSKLVMWDFSKGRPNKIVN 186 (375)
Q Consensus 159 ~~~l~~~-~~d~~i~~wd~~~~~~~~~~~ 186 (375)
+-+|++. ..++.+.+||..+++.+..++
T Consensus 301 ~P~L~~~~~~~~~l~v~D~~tGk~~~~~~ 329 (342)
T PF06433_consen 301 KPLLYALSAGDGTLDVYDAATGKLVRSIE 329 (342)
T ss_dssp S-EEEEEETTTTEEEEEETTT--EEEEE-
T ss_pred CcEEEEEcCCCCeEEEEeCcCCcEEeehh
Confidence 6455544 468999999999999988876
No 374
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.90 E-value=4.8e-05 Score=40.48 Aligned_cols=38 Identities=24% Similarity=0.362 Sum_probs=33.6
Q ss_pred ceeeEeeecCccEEEEEEeCCCCeEEEEcCCCeEEEEE
Q 017194 49 DVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFD 86 (375)
Q Consensus 49 ~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i~iwd 86 (375)
++...+..|...|.++.|.+++..+++++.|+.+++|+
T Consensus 3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 45666778899999999999999999999999999996
No 375
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=97.89 E-value=0.0057 Score=51.46 Aligned_cols=219 Identities=11% Similarity=0.093 Sum_probs=95.6
Q ss_pred CCCeEEEEc-CCCeEEEEECCCCCc-ccccccccC---C----CcceeEEEEcCCCCeEEEEe------CCCcEEEEeCc
Q 017194 69 GNEDIIYVS-SGKEVKSFDVHMPAS-WRPLESYNY---N----KEEINQIVCNPKSSFLACAD------DGGDVKIIDIR 133 (375)
Q Consensus 69 ~~~~l~~~~-~d~~i~iwd~~~~~~-~~~~~~~~~---~----~~~v~~~~~~~~~~~l~~~~------~dg~i~iwd~~ 133 (375)
+.++|+..+ ..+.|+|.|+.+... .+..+.++. + -.....+...|+|+.++++- .-|.+.+.|-+
T Consensus 86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~ 165 (461)
T PF05694_consen 86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGE 165 (461)
T ss_dssp -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TT
T ss_pred cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCc
Confidence 456777766 568999999985322 222222211 0 12233456678898888753 23468888888
Q ss_pred CceeeeeEecC--cccceeEEEEeeCCCcEEEEeec--------------------CCeEEEeeCCCCCcceEEecCCCC
Q 017194 134 QHCLYKSLRAG--HSSICSSVQFIPWKPWEVISGGL--------------------DSKLVMWDFSKGRPNKIVNFGLPE 191 (375)
Q Consensus 134 ~~~~~~~~~~~--~~~~v~~~~~~~~~~~~l~~~~~--------------------d~~i~~wd~~~~~~~~~~~~~~~~ 191 (375)
+.+....+... ....-..+-|.|..+ +++|... ..++.+||+.+.+.++++.++
T Consensus 166 tf~v~g~We~~~~~~~~gYDfw~qpr~n-vMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg--- 241 (461)
T PF05694_consen 166 TFEVKGRWEKDRGPQPFGYDFWYQPRHN-VMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLG--- 241 (461)
T ss_dssp T--EEEE--SB-TT------EEEETTTT-EEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES----
T ss_pred cccccceeccCCCCCCCCCCeEEcCCCC-EEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecC---
Confidence 88877777621 123446777888776 6776542 358999999999999999987
Q ss_pred CCCCCCcccCCC-ceeEEeecCCccccCCCCEEEEEe-cCCcEEEEeC-CCcceeecccccCCCCCCceeecccccceee
Q 017194 192 NNGNAGQCYNPA-FVHAIAIPDADMLDKTNKICVVAK-GDGVVDVINI-ESELNISRSKSTTKPLKGSQSTSKVNIRDAE 268 (375)
Q Consensus 192 ~~~~~~~~~~~~-~v~~~~~~~~~~~~~~~~~l~~~~-~dg~i~i~d~-~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~ 268 (375)
... ....|.|.. +|+...-++++ -..+|..|-- ..+.-..+....
T Consensus 242 ---------~~g~~pLEvRflH----~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~------------------- 289 (461)
T PF05694_consen 242 ---------EEGQMPLEVRFLH----DPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVID------------------- 289 (461)
T ss_dssp ---------TTEEEEEEEEE-S----STT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEE-------------------
T ss_pred ---------CCCCceEEEEecC----CCCccceEEEEeccceEEEEEEcCCCCeeeeEEEE-------------------
Confidence 222 344666655 33455444443 2334433322 222100000000
Q ss_pred eeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEec-CCCeEEEEeCCCce
Q 017194 269 MEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGG-NDKLVKVWDCSRFQ 326 (375)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~-~dg~i~iwd~~~~~ 326 (375)
+.............+..+..-..-|+.+.+| .|.++|.... .+|.|+.||+....
T Consensus 290 ip~~~v~~~~lp~ml~~~~~~P~LitDI~iS---lDDrfLYvs~W~~GdvrqYDISDP~ 345 (461)
T PF05694_consen 290 IPAKKVEGWILPEMLKPFGAVPPLITDILIS---LDDRFLYVSNWLHGDVRQYDISDPF 345 (461)
T ss_dssp E--EE--SS---GGGGGG-EE------EEE----TTS-EEEEEETTTTEEEEEE-SSTT
T ss_pred CCCcccCcccccccccccccCCCceEeEEEc---cCCCEEEEEcccCCcEEEEecCCCC
Confidence 0000000000000011112223558899999 8999887665 58999999998864
No 376
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=97.87 E-value=0.015 Score=50.81 Aligned_cols=114 Identities=11% Similarity=0.096 Sum_probs=70.1
Q ss_pred EEEEEEeCCCCeEEEEc-CCC----eEEEEECCCCCcccccccccCCCcceeEEEEcCCCCeEEEEeCCC----------
Q 017194 61 VTSLCFKSGNEDIIYVS-SGK----EVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGG---------- 125 (375)
Q Consensus 61 v~~l~~~~~~~~l~~~~-~d~----~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg---------- 125 (375)
+....++|++++++.+- ..| .++++|+++++.... .+. ......+.|.++++.|+....+.
T Consensus 126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d--~i~--~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~ 201 (414)
T PF02897_consen 126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPD--GIE--NPKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYP 201 (414)
T ss_dssp EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEE--EEE--EEESEEEEECTTSSEEEEEECSTTTSS-CCGCC
T ss_pred eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCC--ccc--ccccceEEEeCCCCEEEEEEeCcccccccCCCC
Confidence 34578899999988653 233 699999998754322 111 11223399999988876665332
Q ss_pred -cEEEEeCcCceee--eeEecCccc-c-eeEEEEeeCCCcEEEEeecC---CeEEEeeCCCC
Q 017194 126 -DVKIIDIRQHCLY--KSLRAGHSS-I-CSSVQFIPWKPWEVISGGLD---SKLVMWDFSKG 179 (375)
Q Consensus 126 -~i~iwd~~~~~~~--~~~~~~~~~-~-v~~~~~~~~~~~~l~~~~~d---~~i~~wd~~~~ 179 (375)
.|+.|.+.+...- ..+. .... . ...+..+++++++++..... ..+.+.|+..+
T Consensus 202 ~~v~~~~~gt~~~~d~lvfe-~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~ 262 (414)
T PF02897_consen 202 RQVYRHKLGTPQSEDELVFE-EPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDG 262 (414)
T ss_dssp EEEEEEETTS-GGG-EEEEC--TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCT
T ss_pred cEEEEEECCCChHhCeeEEe-ecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEecccc
Confidence 3788888765332 3344 2222 2 56788999999655555433 35888888764
No 377
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=97.86 E-value=0.023 Score=52.49 Aligned_cols=317 Identities=12% Similarity=-0.005 Sum_probs=163.5
Q ss_pred CCceeEEEEecC--CCC---EEEEeCCCCcEEEEec-ccCceeeEe--ee--cCccEEEEEEeCCCCeEEEEcCCCeEEE
Q 017194 15 KATATCCIASRD--RPG---FVASSGEDGCICWFDL-RSKDVQLVT--DV--GNGPVTSLCFKSGNEDIIYVSSGKEVKS 84 (375)
Q Consensus 15 ~~~i~~~~~~~~--~~~---~l~s~~~d~~i~iw~~-~~~~~~~~~--~~--~~~~v~~l~~~~~~~~l~~~~~d~~i~i 84 (375)
+..|.|++++|- +.+ +++.|..+..+.+.-. .....+... .+ -...|.-..+-.+..+|.++..||.+.-
T Consensus 530 e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~~~~~~l~~~~iPRSIl~~~~e~d~~yLlvalgdG~l~~ 609 (1096)
T KOG1897|consen 530 EYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLILITHEQLSGEIIPRSILLTTFEGDIHYLLVALGDGALLY 609 (1096)
T ss_pred cceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCcceeeeeccCCCccchheeeEEeeccceEEEEEcCCceEEE
Confidence 467999999975 233 7888876655444432 222222111 11 1345555666667889999999998876
Q ss_pred EEC--CCCCcccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCceee-eeEecCcccceeEEE-EeeC-CC
Q 017194 85 FDV--HMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLY-KSLRAGHSSICSSVQ-FIPW-KP 159 (375)
Q Consensus 85 wd~--~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~-~~~~~~~~~~v~~~~-~~~~-~~ 159 (375)
+.+ .++.....-+..- ...++.--.|+..++.-+.+..|.-..+|.-+ ++.+ ..+. -..+..++ |+.+ .+
T Consensus 610 fv~d~~tg~lsd~Kk~~l-Gt~P~~Lr~f~sk~~t~vfa~sdrP~viY~~n-~kLv~spls---~kev~~~c~f~s~a~~ 684 (1096)
T KOG1897|consen 610 FVLDINTGQLSDRKKVTL-GTQPISLRTFSSKSRTAVFALSDRPTVIYSSN-GKLVYSPLS---LKEVNHMCPFNSDAYP 684 (1096)
T ss_pred EEEEcccceEcccccccc-CCCCcEEEEEeeCCceEEEEeCCCCEEEEecC-CcEEEeccc---hHHhhhhcccccccCC
Confidence 654 4443222222111 24566666666655444444455666666543 3332 2221 11222222 2221 12
Q ss_pred cEEEEeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEec-----------
Q 017194 160 WEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKG----------- 228 (375)
Q Consensus 160 ~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~----------- 228 (375)
..++++. .+.+++.-++.-+.+..-... -......+++.+ ...++.+.+.
T Consensus 685 d~l~~~~-~~~l~i~tid~iqkl~irtvp------------l~~~prrI~~q~------~sl~~~v~s~r~e~~~~~~~e 745 (1096)
T KOG1897|consen 685 DSLASAN-GGALTIGTIDEIQKLHIRTVP------------LGESPRRICYQE------SSLTFGVLSNRIESSAEYYGE 745 (1096)
T ss_pred ceEEEec-CCceEEEEecchhhcceeeec------------CCCChhheEecc------cceEEEEEecccccchhhcCC
Confidence 1355544 345677666543333322211 113334444443 1222222211
Q ss_pred C---CcEEEEeCCCcceeecccccCCCCCCce---eeccc-ccceeeeeeeecCC----------------cceeEeeee
Q 017194 229 D---GVVDVINIESELNISRSKSTTKPLKGSQ---STSKV-NIRDAEMEILDQSG----------------GKRLHLDYS 285 (375)
Q Consensus 229 d---g~i~i~d~~~~~~~~~~~~~~~~~~~~~---~~s~~-g~~~~~~~~~~~~~----------------~~~~~~~~~ 285 (375)
+ ..++++|-.+.+..............++ .|..| +.++++.......+ ...++.+.+
T Consensus 746 e~~~s~l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e 825 (1096)
T KOG1897|consen 746 EYEVSFLRVLDQNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAE 825 (1096)
T ss_pred cceEEEEEEecCCceeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeee
Confidence 1 2477888887666554443333333333 36666 44444432221111 111222221
Q ss_pred ecCCCccEEEEEEeecCCCCcEEEEecCCCeEEEEeCCCceeeeecchhhhhhhhcccccceeeeeecCCCCCcEEEeeC
Q 017194 286 VGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDT 365 (375)
Q Consensus 286 ~~~~~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~ 365 (375)
..- .+.+.++.. -+|++||.-+ ..|++|++.+. +.++....+..++..+...- .++.++.|+.
T Consensus 826 ~~v-~Gav~aL~~----fngkllA~In--~~vrLye~t~~---------~eLr~e~~~~~~~~aL~l~v-~gdeI~VgDl 888 (1096)
T KOG1897|consen 826 TVV-KGAVYALVE----FNGKLLAGIN--QSVRLYEWTTE---------RELRIECNISNPIIALDLQV-KGDEIAVGDL 888 (1096)
T ss_pred eee-ccceeehhh----hCCeEEEecC--cEEEEEEcccc---------ceehhhhcccCCeEEEEEEe-cCcEEEEeec
Confidence 111 344555544 3788887665 57999999997 45666677788888887776 7888999887
Q ss_pred CCeEEEE
Q 017194 366 SKVVKVY 372 (375)
Q Consensus 366 dg~v~iw 372 (375)
=+++.+-
T Consensus 889 m~Sitll 895 (1096)
T KOG1897|consen 889 MRSITLL 895 (1096)
T ss_pred cceEEEE
Confidence 7766553
No 378
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=97.84 E-value=0.009 Score=47.09 Aligned_cols=194 Identities=12% Similarity=0.093 Sum_probs=112.9
Q ss_pred eeEEEEecCCCCEEEEeCCCC--cEEEEecccCceeeEeeecCc-cEEEEEEeCCCCeEEEEcCCCeEEEEECCCCCccc
Q 017194 18 ATCCIASRDRPGFVASSGEDG--CICWFDLRSKDVQLVTDVGNG-PVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWR 94 (375)
Q Consensus 18 i~~~~~~~~~~~~l~s~~~d~--~i~iw~~~~~~~~~~~~~~~~-~v~~l~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~ 94 (375)
...+.|..+ +.++-+.|.-| .|+.+|+.+++......-... --..++... ++.....=.++...+||..+-+
T Consensus 47 TQGL~~~~~-g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~-d~l~qLTWk~~~~f~yd~~tl~--- 121 (264)
T PF05096_consen 47 TQGLEFLDD-GTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILG-DKLYQLTWKEGTGFVYDPNTLK--- 121 (264)
T ss_dssp EEEEEEEET-TEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEET-TEEEEEESSSSEEEEEETTTTE---
T ss_pred CccEEecCC-CEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEEC-CEEEEEEecCCeEEEEccccce---
Confidence 456777666 67777777766 799999999987665543221 112233332 2333333457899999998643
Q ss_pred ccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCceeeeeEecC-c---ccceeEEEEeeCCCcEEEEeecCCe
Q 017194 95 PLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAG-H---SSICSSVQFIPWKPWEVISGGLDSK 170 (375)
Q Consensus 95 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~---~~~v~~~~~~~~~~~~l~~~~~d~~ 170 (375)
.+..+.. .+.=..++ .+++.|+.......++++|.++.+..+.+... . -..++.+.|. +|. +.|-.-....
T Consensus 122 ~~~~~~y-~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~-IyANVW~td~ 196 (264)
T PF05096_consen 122 KIGTFPY-PGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGK-IYANVWQTDR 196 (264)
T ss_dssp EEEEEE--SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTE-EEEEETTSSE
T ss_pred EEEEEec-CCcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCE-EEEEeCCCCe
Confidence 3333332 23445555 46777887777789999999888777666521 1 1256677776 454 6676777788
Q ss_pred EEEeeCCCCCcceEEecCC--CCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEE
Q 017194 171 LVMWDFSKGRPNKIVNFGL--PENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVA 226 (375)
Q Consensus 171 i~~wd~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~ 226 (375)
|...|..+|+....+.+.. +...............+.||+.|. .++++++|
T Consensus 197 I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~-----~~~l~vTG 249 (264)
T PF05096_consen 197 IVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPE-----TDRLFVTG 249 (264)
T ss_dssp EEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETT-----TTEEEEEE
T ss_pred EEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCC-----CCEEEEEe
Confidence 9999999999888776431 000000011112456899999984 45555555
No 379
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.78 E-value=0.012 Score=46.67 Aligned_cols=174 Identities=13% Similarity=0.119 Sum_probs=116.3
Q ss_pred eecCCCceeEEEEecCCCCEEEEeCCCCcEEEEecccCceeeEeeec-CccEEEEEEeCCCCeEEEEcCCCeEEEEECCC
Q 017194 11 LRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVG-NGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHM 89 (375)
Q Consensus 11 l~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~-~~~v~~l~~~~~~~~l~~~~~d~~i~iwd~~~ 89 (375)
+.|-+..|.++.|+|+ .+.|.+......-.|+=..+|+.+.++.-. -.....+.+..++++.++--.++.+.++.+..
T Consensus 81 i~g~~~nvS~LTynp~-~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~ 159 (316)
T COG3204 81 ILGETANVSSLTYNPD-TRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDA 159 (316)
T ss_pred cccccccccceeeCCC-cceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcC
Confidence 3444556999999999 566666666666667766778888877532 23345678888888777777788888888765
Q ss_pred CCcccc-------cccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCce-e--eeeEecCc-------ccceeEE
Q 017194 90 PASWRP-------LESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHC-L--YKSLRAGH-------SSICSSV 152 (375)
Q Consensus 90 ~~~~~~-------~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-~--~~~~~~~~-------~~~v~~~ 152 (375)
+..... +......+.....++|.|..+.|+.+-+-.-+.||.+.... . +.... .+ -..|.++
T Consensus 160 ~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~-~~~~~~~~f~~DvSgl 238 (316)
T COG3204 160 DTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASL-DPTADRDLFVLDVSGL 238 (316)
T ss_pred CccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCccccccccc-CcccccceEeeccccc
Confidence 432222 22222225677899999999888888777778887765332 1 11111 11 2357788
Q ss_pred EEeeCCCcEEEEeecCCeEEEeeCCCCCcceEEec
Q 017194 153 QFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNF 187 (375)
Q Consensus 153 ~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~ 187 (375)
.|.+..+.+++.+.+++.+.-.|.. |..+..+..
T Consensus 239 ~~~~~~~~LLVLS~ESr~l~Evd~~-G~~~~~lsL 272 (316)
T COG3204 239 EFNAITNSLLVLSDESRRLLEVDLS-GEVIELLSL 272 (316)
T ss_pred eecCCCCcEEEEecCCceEEEEecC-CCeeeeEEe
Confidence 8988776678888888888888865 555555543
No 380
>PRK13616 lipoprotein LpqB; Provisional
Probab=97.77 E-value=0.0086 Score=54.08 Aligned_cols=150 Identities=15% Similarity=0.127 Sum_probs=84.8
Q ss_pred CceeEEEEecCCCCEEEEeC------CCCcEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEEcCC----------
Q 017194 16 ATATCCIASRDRPGFVASSG------EDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSG---------- 79 (375)
Q Consensus 16 ~~i~~~~~~~~~~~~l~s~~------~d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d---------- 79 (375)
..+...+++|+ ++.+|..- .|+.-.||-...+.....+.. ......-.|+|+|+.+++....
T Consensus 350 ~~vsspaiSpd-G~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~~~lt~-g~~~t~PsWspDG~~lw~v~dg~~~~~v~~~~ 427 (591)
T PRK13616 350 GNITSAALSRS-GRQVAAVVTLGRGAPDPASSLWVGPLGGVAVQVLE-GHSLTRPSWSLDADAVWVVVDGNTVVRVIRDP 427 (591)
T ss_pred cCcccceECCC-CCEEEEEEeecCCCCCcceEEEEEeCCCcceeeec-CCCCCCceECCCCCceEEEecCcceEEEeccC
Confidence 35778899999 66655443 244334443322222233322 2347888999998877776533
Q ss_pred --CeEEEEECCCCCcccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEE---EeCcCce-ee---eeEecCccccee
Q 017194 80 --KEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKI---IDIRQHC-LY---KSLRAGHSSICS 150 (375)
Q Consensus 80 --~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i---wd~~~~~-~~---~~~~~~~~~~v~ 150 (375)
+.+.+.++..+.. .. . ..+.|..+.|+|||..++... ++.|++ -....+. .+ ..+...-...+.
T Consensus 428 ~~gql~~~~vd~ge~-~~--~---~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~ 500 (591)
T PRK13616 428 ATGQLARTPVDASAV-AS--R---VPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPGLGDTAV 500 (591)
T ss_pred CCceEEEEeccCchh-hh--c---cCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeecccCCccc
Confidence 2333334433221 11 1 246799999999999988775 477777 3433443 11 112212333468
Q ss_pred EEEEeeCCCcEEEEeecCCeEEEeeC
Q 017194 151 SVQFIPWKPWEVISGGLDSKLVMWDF 176 (375)
Q Consensus 151 ~~~~~~~~~~~l~~~~~d~~i~~wd~ 176 (375)
++.|.+++. |+++..++...+|.+
T Consensus 501 ~l~W~~~~~--L~V~~~~~~~~v~~v 524 (591)
T PRK13616 501 SLDWRTGDS--LVVGRSDPEHPVWYV 524 (591)
T ss_pred cceEecCCE--EEEEecCCCCceEEE
Confidence 899999986 445555444444443
No 381
>PRK13616 lipoprotein LpqB; Provisional
Probab=97.73 E-value=0.011 Score=53.36 Aligned_cols=103 Identities=11% Similarity=0.032 Sum_probs=63.5
Q ss_pred ccEEEEEEeCCCCeEEEEc------CCC--eEEEEECCCCCcccccccccCCCcceeEEEEcCCCCeEEEEeCC------
Q 017194 59 GPVTSLCFKSGNEDIIYVS------SGK--EVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDG------ 124 (375)
Q Consensus 59 ~~v~~l~~~~~~~~l~~~~------~d~--~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d------ 124 (375)
..+.+.+++|+|+.++... .|. .|.+++.. .....+.. ......-.|+|+|..|++....
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g--g~~~~lt~----g~~~t~PsWspDG~~lw~v~dg~~~~~v 423 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLG--GVAVQVLE----GHSLTRPSWSLDADAVWVVVDGNTVVRV 423 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCC--Ccceeeec----CCCCCCceECCCCCceEEEecCcceEEE
Confidence 4678899999999887765 243 55555543 22233321 2247888999998877776432
Q ss_pred ------CcEEEEeCcCceeeeeEecCcccceeEEEEeeCCCcEEEEeecCCeEEE
Q 017194 125 ------GDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVM 173 (375)
Q Consensus 125 ------g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~ 173 (375)
+.+.+.+++.++... . ....|..+.|+|||.. ++... +++|++
T Consensus 424 ~~~~~~gql~~~~vd~ge~~~--~--~~g~Issl~wSpDG~R-iA~i~-~g~v~V 472 (591)
T PRK13616 424 IRDPATGQLARTPVDASAVAS--R--VPGPISELQLSRDGVR-AAMII-GGKVYL 472 (591)
T ss_pred eccCCCceEEEEeccCchhhh--c--cCCCcCeEEECCCCCE-EEEEE-CCEEEE
Confidence 233333444333322 1 2457999999999994 44433 477777
No 382
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.72 E-value=0.0011 Score=56.36 Aligned_cols=148 Identities=16% Similarity=0.166 Sum_probs=93.6
Q ss_pred eCCCcEEEEeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccc-cCCCCEEEEEecCCcEEE
Q 017194 156 PWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADML-DKTNKICVVAKGDGVVDV 234 (375)
Q Consensus 156 ~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~~~~~l~~~~~dg~i~i 234 (375)
.+.+.+|.++.....++-.|+..|+.+..+++. ..|+-+.+.|..-. .-+...-++|-.++.|.-
T Consensus 343 ~dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~--------------~di~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfr 408 (644)
T KOG2395|consen 343 ADSNLILMDGGEQDKLYKLDIERGKIVEEWKFE--------------DDINMVDITPDFKFAQLTSEQTLVGLSDNSVFR 408 (644)
T ss_pred cccceEeeCCCCcCcceeeecccceeeeEeecc--------------CCcceeeccCCcchhcccccccEEeecCCceEE
Confidence 344435556677778999999999999999976 34777777773100 001112345667788999
Q ss_pred EeCCCcceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEecCC
Q 017194 235 INIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGND 314 (375)
Q Consensus 235 ~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~d 314 (375)
||++-.... .|+ ...-+.+.. .....|.+-. .+| +++.||.+
T Consensus 409 iDpRv~~~~---------------------kl~------------~~q~kqy~~-k~nFsc~aTT---~sG-~IvvgS~~ 450 (644)
T KOG2395|consen 409 IDPRVQGKN---------------------KLA------------VVQSKQYST-KNNFSCFATT---ESG-YIVVGSLK 450 (644)
T ss_pred ecccccCcc---------------------eee------------eeecccccc-ccccceeeec---CCc-eEEEeecC
Confidence 998831000 000 000011111 2334555544 444 89999999
Q ss_pred CeEEEEeCCCceeeeecchhhhhhhhcccccceeeeeecCCCCCcEEEeeC
Q 017194 315 KLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDT 365 (375)
Q Consensus 315 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~ 365 (375)
|.|++||--.. ..-..+++...+|..+..+. +|++|+..+.
T Consensus 451 GdIRLYdri~~---------~AKTAlPgLG~~I~hVdvta-dGKwil~Tc~ 491 (644)
T KOG2395|consen 451 GDIRLYDRIGR---------RAKTALPGLGDAIKHVDVTA-DGKWILATCK 491 (644)
T ss_pred CcEEeehhhhh---------hhhhcccccCCceeeEEeec-cCcEEEEecc
Confidence 99999998333 44456788899999999998 9998776654
No 383
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=97.70 E-value=0.03 Score=48.95 Aligned_cols=197 Identities=14% Similarity=0.114 Sum_probs=106.7
Q ss_pred eeEEEEecCCCCEEEEe-CCC----CcEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEEcCCC-----------e
Q 017194 18 ATCCIASRDRPGFVASS-GED----GCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGK-----------E 81 (375)
Q Consensus 18 i~~~~~~~~~~~~l~s~-~~d----~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~-----------~ 81 (375)
+....++|+ ++++|.+ +.. ..|+++|+++++.+...-. ......+.|.++++.|+....+. .
T Consensus 126 ~~~~~~Spd-g~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~-~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~ 203 (414)
T PF02897_consen 126 LGGFSVSPD-GKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIE-NPKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQ 203 (414)
T ss_dssp EEEEEETTT-SSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEE-EEESEEEEECTTSSEEEEEECSTTTSS-CCGCCEE
T ss_pred eeeeeECCC-CCEEEEEecCCCCceEEEEEEECCCCcCcCCccc-ccccceEEEeCCCCEEEEEEeCcccccccCCCCcE
Confidence 335788999 7777744 332 4699999999976543211 11223399999988887765432 4
Q ss_pred EEEEECCCCCcccccccccCCCcc--eeEEEEcCCCCeEEEEeC---C-CcEEEEeCcCc----eeeeeEecCcccceeE
Q 017194 82 VKSFDVHMPASWRPLESYNYNKEE--INQIVCNPKSSFLACADD---G-GDVKIIDIRQH----CLYKSLRAGHSSICSS 151 (375)
Q Consensus 82 i~iwd~~~~~~~~~~~~~~~~~~~--v~~~~~~~~~~~l~~~~~---d-g~i~iwd~~~~----~~~~~~~~~~~~~v~~ 151 (375)
|+.|.+.++.... ...+...... ...+..++++++|+.... + ..+++.|+..+ .....+. .....+..
T Consensus 204 v~~~~~gt~~~~d-~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~-~~~~~~~~ 281 (414)
T PF02897_consen 204 VYRHKLGTPQSED-ELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLS-PREDGVEY 281 (414)
T ss_dssp EEEEETTS-GGG--EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEE-ESSSS-EE
T ss_pred EEEEECCCChHhC-eeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEe-CCCCceEE
Confidence 7888887654321 1222221222 567889999999776542 2 35788888764 2333333 23333333
Q ss_pred EEEeeCCCcEEEEe---ecCCeEEEeeCCCCCc--ceEEecCCCCCCCCCCcccCCC--ceeEEeecCCccccCCCCEEE
Q 017194 152 VQFIPWKPWEVISG---GLDSKLVMWDFSKGRP--NKIVNFGLPENNGNAGQCYNPA--FVHAIAIPDADMLDKTNKICV 224 (375)
Q Consensus 152 ~~~~~~~~~~l~~~---~~d~~i~~wd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~~~~~~~l~ 224 (375)
..-+..+. +++.. ...+.|...++..... ....-.. +.. .+..+... .+.+++
T Consensus 282 ~v~~~~~~-~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~------------~~~~~~l~~~~~~-------~~~Lvl 341 (414)
T PF02897_consen 282 YVDHHGDR-LYILTNDDAPNGRLVAVDLADPSPAEWWTVLIP------------EDEDVSLEDVSLF-------KDYLVL 341 (414)
T ss_dssp EEEEETTE-EEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--------------SSSEEEEEEEEE-------TTEEEE
T ss_pred EEEccCCE-EEEeeCCCCCCcEEEEecccccccccceeEEcC------------CCCceeEEEEEEE-------CCEEEE
Confidence 33233443 33333 2346777778776653 1212112 122 35555553 244555
Q ss_pred EEecCC--cEEEEeCC
Q 017194 225 VAKGDG--VVDVINIE 238 (375)
Q Consensus 225 ~~~~dg--~i~i~d~~ 238 (375)
....++ .|+++++.
T Consensus 342 ~~~~~~~~~l~v~~~~ 357 (414)
T PF02897_consen 342 SYRENGSSRLRVYDLD 357 (414)
T ss_dssp EEEETTEEEEEEEETT
T ss_pred EEEECCccEEEEEECC
Confidence 555554 57888888
No 384
>PHA02713 hypothetical protein; Provisional
Probab=97.67 E-value=0.0041 Score=56.09 Aligned_cols=185 Identities=8% Similarity=0.019 Sum_probs=94.0
Q ss_pred CCEEEEeCCC------CcEEEEecccCcee--eEeeecCccEEEEEEeCCCCeEEEEcCCC-----eEEEEECCCCCccc
Q 017194 28 PGFVASSGED------GCICWFDLRSKDVQ--LVTDVGNGPVTSLCFKSGNEDIIYVSSGK-----EVKSFDVHMPASWR 94 (375)
Q Consensus 28 ~~~l~s~~~d------~~i~iw~~~~~~~~--~~~~~~~~~v~~l~~~~~~~~l~~~~~d~-----~i~iwd~~~~~~~~ 94 (375)
+.+.+.||.+ ..+..||..+..-. ..+....... +++ .-+++..+.|+.++ .+..||..++ .+.
T Consensus 304 ~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~-~~~-~~~g~IYviGG~~~~~~~~sve~Ydp~~~-~W~ 380 (557)
T PHA02713 304 NEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRF-SLA-VIDDTIYAIGGQNGTNVERTIECYTMGDD-KWK 380 (557)
T ss_pred CEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhce-eEE-EECCEEEEECCcCCCCCCceEEEEECCCC-eEE
Confidence 5667777753 24677887665421 1111111111 222 23566777777653 5888998864 344
Q ss_pred ccccccCCCcceeEEEEcCCCCeEEEEeCCC-----------------------cEEEEeCcCcee--eeeEecCcccce
Q 017194 95 PLESYNYNKEEINQIVCNPKSSFLACADDGG-----------------------DVKIIDIRQHCL--YKSLRAGHSSIC 149 (375)
Q Consensus 95 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-----------------------~i~iwd~~~~~~--~~~~~~~~~~~v 149 (375)
.+............+. -+++..+.|+.++ .+..||.++.+- +..+. .....
T Consensus 381 ~~~~mp~~r~~~~~~~--~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~-~~r~~- 456 (557)
T PHA02713 381 MLPDMPIALSSYGMCV--LDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFW-TGTIR- 456 (557)
T ss_pred ECCCCCcccccccEEE--ECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCCC-ccccc-
Confidence 4443322111222222 2566777776542 477788776532 22222 11111
Q ss_pred eEEEEeeCCCcEEEEeecC------CeEEEeeCCC-CCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCE
Q 017194 150 SSVQFIPWKPWEVISGGLD------SKLVMWDFSK-GRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKI 222 (375)
Q Consensus 150 ~~~~~~~~~~~~l~~~~~d------~~i~~wd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 222 (375)
.+++ .-++. +.+.|+.+ ..+..||..+ .+-...-... .+.....++.. ++++
T Consensus 457 ~~~~-~~~~~-IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~------------~~r~~~~~~~~-------~~~i 515 (557)
T PHA02713 457 PGVV-SHKDD-IYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTE------------SRLSALHTILH-------DNTI 515 (557)
T ss_pred CcEE-EECCE-EEEEeCCCCCCccceeEEEecCCCCCCeeEccccC------------cccccceeEEE-------CCEE
Confidence 1222 22344 67777654 2467888876 4432221111 11112233333 6899
Q ss_pred EEEEecCC--cEEEEeCCCc
Q 017194 223 CVVAKGDG--VVDVINIESE 240 (375)
Q Consensus 223 l~~~~~dg--~i~i~d~~~~ 240 (375)
.++|+.+| .+..||..+.
T Consensus 516 yv~Gg~~~~~~~e~yd~~~~ 535 (557)
T PHA02713 516 MMLHCYESYMLQDTFNVYTY 535 (557)
T ss_pred EEEeeecceeehhhcCcccc
Confidence 99999888 6777777764
No 385
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=97.63 E-value=0.044 Score=49.15 Aligned_cols=48 Identities=4% Similarity=0.037 Sum_probs=33.2
Q ss_pred CCCEEEEEecCCcEEEEeCCCcceeecccccCCCCCCceeecccccce
Q 017194 219 TNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRD 266 (375)
Q Consensus 219 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~ 266 (375)
.+.+++.++.+|.++.+|.++++.+............-+.+..+|++.
T Consensus 471 ~g~lvf~g~~~G~l~a~D~~TGe~lw~~~~g~~~~a~P~ty~~~G~qY 518 (527)
T TIGR03075 471 AGDLVFYGTLEGYFKAFDAKTGEELWKFKTGSGIVGPPVTYEQDGKQY 518 (527)
T ss_pred CCcEEEEECCCCeEEEEECCCCCEeEEEeCCCCceecCEEEEeCCEEE
Confidence 356788888899999999999988876655433333344444555543
No 386
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=97.59 E-value=0.051 Score=48.77 Aligned_cols=200 Identities=11% Similarity=0.039 Sum_probs=114.0
Q ss_pred CEEEEeCCCCcEEEEecccCceeeEeeecC-ccEE---E-------EEEeCCCCeEEEEcCCCeEEEEECCCCCcccccc
Q 017194 29 GFVASSGEDGCICWFDLRSKDVQLVTDVGN-GPVT---S-------LCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLE 97 (375)
Q Consensus 29 ~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~-~~v~---~-------l~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~ 97 (375)
..|+.++.++.|.-.|..+|+.+-.+.... ..+. + +++. +..++.++.++.+.-.|.++++..-...
T Consensus 70 g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~--~~~v~v~t~dg~l~ALDa~TGk~~W~~~ 147 (527)
T TIGR03075 70 GVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALY--DGKVFFGTLDARLVALDAKTGKVVWSKK 147 (527)
T ss_pred CEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceEE--CCEEEEEcCCCEEEEEECCCCCEEeecc
Confidence 466667778899999999999877664321 1111 1 1222 3457778889999999999887654433
Q ss_pred cccCC-CcceeE-EEEcCCCCeEEEEe------CCCcEEEEeCcCceeeeeEecCccc----------------------
Q 017194 98 SYNYN-KEEINQ-IVCNPKSSFLACAD------DGGDVKIIDIRQHCLYKSLRAGHSS---------------------- 147 (375)
Q Consensus 98 ~~~~~-~~~v~~-~~~~~~~~~l~~~~------~dg~i~iwd~~~~~~~~~~~~~~~~---------------------- 147 (375)
..... ...+.+ ... .++ .++++. .+|.|..+|.++++.+-.+......
T Consensus 148 ~~~~~~~~~~tssP~v-~~g-~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~~tw~~ 225 (527)
T TIGR03075 148 NGDYKAGYTITAAPLV-VKG-KVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPGAKTWPG 225 (527)
T ss_pred cccccccccccCCcEE-ECC-EEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCcccccccccccccccccCCCCC
Confidence 21100 011111 111 134 455543 2688999999999887655411100
Q ss_pred --------ce-eEEEEeeCCCcEEEEeec-----CC-----------eEEEeeCCCCCcceEEecCCCCCCCCCCcccCC
Q 017194 148 --------IC-SSVQFIPWKPWEVISGGL-----DS-----------KLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNP 202 (375)
Q Consensus 148 --------~v-~~~~~~~~~~~~l~~~~~-----d~-----------~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (375)
.+ ..+++.|... ++..+.. ++ .|.-.|+++|+....++....+.-+ .- ..
T Consensus 226 ~~~~~gg~~~W~~~s~D~~~~-lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD---~d-~~ 300 (527)
T TIGR03075 226 DAWKTGGGATWGTGSYDPETN-LIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEWD---YD-GV 300 (527)
T ss_pred CccccCCCCccCceeEcCCCC-eEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeCCCCCCcc---cc-CC
Confidence 11 1345666555 4544441 12 6777888899888877643111000 00 00
Q ss_pred CceeEEeecCCccccCCCC---EEEEEecCCcEEEEeCCCccee
Q 017194 203 AFVHAIAIPDADMLDKTNK---ICVVAKGDGVVDVINIESELNI 243 (375)
Q Consensus 203 ~~v~~~~~~~~~~~~~~~~---~l~~~~~dg~i~i~d~~~~~~~ 243 (375)
....-+.+.. +++ .++.+..+|.+.++|.++++.+
T Consensus 301 ~~p~l~d~~~------~G~~~~~v~~~~K~G~~~vlDr~tG~~i 338 (527)
T TIGR03075 301 NEMILFDLKK------DGKPRKLLAHADRNGFFYVLDRTNGKLL 338 (527)
T ss_pred CCcEEEEecc------CCcEEEEEEEeCCCceEEEEECCCCcee
Confidence 1111122211 455 7889999999999999998764
No 387
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.55 E-value=0.034 Score=45.75 Aligned_cols=225 Identities=12% Similarity=0.047 Sum_probs=121.5
Q ss_pred EEeCCCCeEE-EEcCCCeEEEEECCCCCcccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCceeeeeEec
Q 017194 65 CFKSGNEDII-YVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRA 143 (375)
Q Consensus 65 ~~~~~~~~l~-~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 143 (375)
.|.++...|+ +--..+.|.-|+..+++. ..+.. ...+.++..-..+..|+++. ..+.+++.+++..+..+..
T Consensus 31 ~w~~~~~~L~w~DI~~~~i~r~~~~~g~~-~~~~~----p~~~~~~~~~d~~g~Lv~~~--~g~~~~~~~~~~~~t~~~~ 103 (307)
T COG3386 31 VWDPDRGALLWVDILGGRIHRLDPETGKK-RVFPS----PGGFSSGALIDAGGRLIACE--HGVRLLDPDTGGKITLLAE 103 (307)
T ss_pred cCcCCCCEEEEEeCCCCeEEEecCCcCce-EEEEC----CCCcccceeecCCCeEEEEc--cccEEEeccCCceeEEecc
Confidence 4566666443 334467888888875432 11111 23344444434444555443 2366677665544332220
Q ss_pred ----CcccceeEEEEeeCCCcEEEEeecC------------CeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeE
Q 017194 144 ----GHSSICSSVQFIPWKPWEVISGGLD------------SKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHA 207 (375)
Q Consensus 144 ----~~~~~v~~~~~~~~~~~~l~~~~~d------------~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 207 (375)
......+.+...|+|. +..++.. |.|+.+|. .+...+.+.. +-..-+.
T Consensus 104 ~~~~~~~~r~ND~~v~pdG~--~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~-------------~~~~~NG 167 (307)
T COG3386 104 PEDGLPLNRPNDGVVDPDGR--IWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDD-------------DLTIPNG 167 (307)
T ss_pred ccCCCCcCCCCceeEcCCCC--EEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecC-------------cEEecCc
Confidence 1124567888899987 3333322 33333443 3333333321 1245578
Q ss_pred EeecCCccccCCCCEEEEEecC-CcEEEEeCCCcceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeee
Q 017194 208 IAIPDADMLDKTNKICVVAKGD-GVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSV 286 (375)
Q Consensus 208 ~~~~~~~~~~~~~~~l~~~~~d-g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~ 286 (375)
|+|+| +++.|+.+... +.|+-|++...... . ... ......
T Consensus 168 la~Sp------Dg~tly~aDT~~~~i~r~~~d~~~g~-----------------~---------------~~~-~~~~~~ 208 (307)
T COG3386 168 LAFSP------DGKTLYVADTPANRIHRYDLDPATGP-----------------I---------------GGR-RGFVDF 208 (307)
T ss_pred eEECC------CCCEEEEEeCCCCeEEEEecCcccCc-----------------c---------------CCc-ceEEEc
Confidence 99999 78888877654 78888877630000 0 000 111122
Q ss_pred cCCCccEEEEEEeecCCCCcEEEEecCCC-eEEEEeCCCceeeeecchhhhhhhhcccccceeeeeecCCCCCcEEEee
Q 017194 287 GGHTAAASCVAFSMFGERGKYLISGGNDK-LVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCD 364 (375)
Q Consensus 287 ~~~~~~v~~~~~s~~~~~~~~l~s~~~dg-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~ 364 (375)
....+..-.++.. .+|.+.+++-.+| .|.+|+.. + +++....-....+++++|--++.+.|+..+
T Consensus 209 ~~~~G~PDG~~vD---adG~lw~~a~~~g~~v~~~~pd-G---------~l~~~i~lP~~~~t~~~FgG~~~~~L~iTs 274 (307)
T COG3386 209 DEEPGLPDGMAVD---ADGNLWVAAVWGGGRVVRFNPD-G---------KLLGEIKLPVKRPTNPAFGGPDLNTLYITS 274 (307)
T ss_pred cCCCCCCCceEEe---CCCCEEEecccCCceEEEECCC-C---------cEEEEEECCCCCCccceEeCCCcCEEEEEe
Confidence 2234555566777 7888776555554 89999988 5 444444444467788888765556655544
No 388
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=97.47 E-value=0.035 Score=44.03 Aligned_cols=198 Identities=14% Similarity=0.105 Sum_probs=116.3
Q ss_pred CceeEEEEecCCCCEEEEeCCCCcEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEEcCCCeEEEEECCCCCcccc
Q 017194 16 ATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRP 95 (375)
Q Consensus 16 ~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~ 95 (375)
+-+..+.++. +++..+..+.-++|.|+.+......+..-+-.=.+-.|.-.|++...+..+.-+.+.|+.+......
T Consensus 87 ~l~~Dv~vse---~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~vsGn~aYVadlddgfLivdvsdpssP~l 163 (370)
T COG5276 87 DLFADVRVSE---EYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGVYVSGNYAYVADLDDGFLIVDVSDPSSPQL 163 (370)
T ss_pred hhhheeEecc---cEEEEEcCCCceEEEeccCCCCcceeccccCCceEEEEEecCCEEEEeeccCcEEEEECCCCCCcee
Confidence 3455566653 4666666666799999987654333321111112233444588888888777788999987765555
Q ss_pred cccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCcee---eeeEecCcccceeEEEEeeCCCcEEEEeecCCeEE
Q 017194 96 LESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCL---YKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLV 172 (375)
Q Consensus 96 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~ 172 (375)
...+......-..++.+ |++-..+..|+-+.+.|+..... +.... ....+.++..+++.. +++-. +--+.
T Consensus 164 agrya~~~~d~~~v~IS--Gn~AYvA~~d~GL~ivDVSnp~sPvli~~~n--~g~g~~sv~vsdnr~--y~vvy-~egvl 236 (370)
T COG5276 164 AGRYALPGGDTHDVAIS--GNYAYVAWRDGGLTIVDVSNPHSPVLIGSYN--TGPGTYSVSVSDNRA--YLVVY-DEGVL 236 (370)
T ss_pred eeeeccCCCCceeEEEe--cCeEEEEEeCCCeEEEEccCCCCCeEEEEEe--cCCceEEEEecCCee--EEEEc-ccceE
Confidence 44444434444556654 55777777899999999975533 33333 223667776666643 33333 33467
Q ss_pred EeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCc
Q 017194 173 MWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESE 240 (375)
Q Consensus 173 ~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~ 240 (375)
+-|....+....+..-.+ ..+..+..+.+ .+++...+..+.-+.+-|..+.
T Consensus 237 ivd~s~~ssp~~~gsyet---------~~p~~~s~v~V--------s~~~~Yvadga~gl~~idisnp 287 (370)
T COG5276 237 IVDVSGPSSPTVFGSYET---------SNPVSISTVPV--------SGEYAYVADGAKGLPIIDISNP 287 (370)
T ss_pred EEecCCCCCceEeecccc---------CCcccccceec--------ccceeeeeccccCceeEeccCC
Confidence 777776654444432200 01223333444 3777777777777788887753
No 389
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=97.45 E-value=0.059 Score=46.15 Aligned_cols=53 Identities=9% Similarity=0.074 Sum_probs=41.7
Q ss_pred EeeeeecCCCccEEEEEEeecCCCCcEEEEecCCCeEEEEeCCCceeeeecchhhhhhhhccccc
Q 017194 281 HLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNK 345 (375)
Q Consensus 281 ~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 345 (375)
.....+......+.++..+ |++++.|+...=|.|.++|+.++ ..++...|..+
T Consensus 298 ~~r~~l~D~~R~~~~i~~s---P~~~laA~tDslGRV~LiD~~~~---------~vvrmWKGYRd 350 (415)
T PF14655_consen 298 PMRFGLPDSKREGESICLS---PSGRLAAVTDSLGRVLLIDVARG---------IVVRMWKGYRD 350 (415)
T ss_pred ceEEeeccCCceEEEEEEC---CCCCEEEEEcCCCcEEEEECCCC---------hhhhhhccCcc
Confidence 4445566667778999999 89999998888899999999998 66666666543
No 390
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=97.40 E-value=0.021 Score=51.66 Aligned_cols=147 Identities=14% Similarity=0.165 Sum_probs=77.1
Q ss_pred CCCeEEEEcCC------CeEEEEECCCCCcccccccccCCCcceeEEEEcCCCCeEEEEeCC------CcEEEEeCcCce
Q 017194 69 GNEDIIYVSSG------KEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDG------GDVKIIDIRQHC 136 (375)
Q Consensus 69 ~~~~l~~~~~d------~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d------g~i~iwd~~~~~ 136 (375)
.+..++.|+.+ ..+..+|..++. +..+..... ...-.+++.. ++...++|+.| .++..||.++.+
T Consensus 284 ~~~l~~vGG~~~~~~~~~~ve~yd~~~~~-w~~~a~m~~-~r~~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~~ 360 (571)
T KOG4441|consen 284 SGKLVAVGGYNRQGQSLRSVECYDPKTNE-WSSLAPMPS-PRCRVGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTNQ 360 (571)
T ss_pred CCeEEEECCCCCCCcccceeEEecCCcCc-EeecCCCCc-ccccccEEEE-CCEEEEEccccCCCcccceEEEecCCCCc
Confidence 34556667666 367888888652 344433332 2223334443 45677888887 357788887664
Q ss_pred eeeeEecCcccceeEEEEee-CCCcEEEEeecCCe-----EEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEee
Q 017194 137 LYKSLRAGHSSICSSVQFIP-WKPWEVISGGLDSK-----LVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAI 210 (375)
Q Consensus 137 ~~~~~~~~~~~~v~~~~~~~-~~~~~l~~~~~d~~-----i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 210 (375)
=.. +. .....-....... +|. +.++|+.||. +-.||..+.+....-... ....-.+++.
T Consensus 361 W~~-~a-~M~~~R~~~~v~~l~g~-iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~------------~~r~~~gv~~ 425 (571)
T KOG4441|consen 361 WTP-VA-PMNTKRSDFGVAVLDGK-LYAVGGFDGEKSLNSVECYDPVTNKWTPVAPML------------TRRSGHGVAV 425 (571)
T ss_pred eec-cC-CccCccccceeEEECCE-EEEEeccccccccccEEEecCCCCcccccCCCC------------cceeeeEEEE
Confidence 221 11 1111111112222 344 8899998864 667777765433222111 0111122222
Q ss_pred cCCccccCCCCEEEEEecCC------cEEEEeCCCc
Q 017194 211 PDADMLDKTNKICVVAKGDG------VVDVINIESE 240 (375)
Q Consensus 211 ~~~~~~~~~~~~l~~~~~dg------~i~i~d~~~~ 240 (375)
. ++.+.++|+.++ ++..||..++
T Consensus 426 ~-------~g~iYi~GG~~~~~~~l~sve~YDP~t~ 454 (571)
T KOG4441|consen 426 L-------GGKLYIIGGGDGSSNCLNSVECYDPETN 454 (571)
T ss_pred E-------CCEEEEEcCcCCCccccceEEEEcCCCC
Confidence 2 688888888554 4667777753
No 391
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=97.38 E-value=0.038 Score=42.31 Aligned_cols=194 Identities=12% Similarity=0.139 Sum_probs=96.5
Q ss_pred CCEEEEeCCCCcEEEEecccCcee-eEeeecCccEEEEEEeC-CCC--eEEEEcCCCeEEEEECCCC--Ccccc---ccc
Q 017194 28 PGFVASSGEDGCICWFDLRSKDVQ-LVTDVGNGPVTSLCFKS-GNE--DIIYVSSGKEVKSFDVHMP--ASWRP---LES 98 (375)
Q Consensus 28 ~~~l~s~~~d~~i~iw~~~~~~~~-~~~~~~~~~v~~l~~~~-~~~--~l~~~~~d~~i~iwd~~~~--~~~~~---~~~ 98 (375)
+.++..--..|.|.-||..+.+.. ..+++ .++.++.+-- ++. +.+.++..-.|--||-... ..... +..
T Consensus 27 ~sLl~VDi~ag~v~r~D~~qn~v~ra~ie~--p~~ag~ilpv~~~~q~~~v~~G~kf~i~nwd~~~~~a~v~~t~~ev~~ 104 (310)
T KOG4499|consen 27 QSLLYVDIEAGEVHRYDIEQNKVYRAKIEG--PPSAGFILPVEGGPQEFAVGCGSKFVIVNWDGVSESAKVYRTLFEVQP 104 (310)
T ss_pred ceEEEEEeccCceehhhhhhhheEEEEEec--CcceeEEEEecCCCceEEEeecceEEEEEcccccceeeeeeeccccCc
Confidence 445555445566777888765532 22332 2234444422 222 2233332223445653211 11111 111
Q ss_pred ccCCCcceeEEEEcCCCCeEEEEeC-C---------CcEEEEeCcCceeeeeEecCcccceeEEEEeeCCCcEEEEeecC
Q 017194 99 YNYNKEEINQIVCNPKSSFLACADD-G---------GDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLD 168 (375)
Q Consensus 99 ~~~~~~~v~~~~~~~~~~~l~~~~~-d---------g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d 168 (375)
.. .+...+.-..+|+|+++ .|.. | |.++.|-. +..+..+. ..-..-+.++|+.+.+.+.++-+.+
T Consensus 105 d~-kknR~NDgkvdP~Gryy-~GtMad~~~~le~~~g~Ly~~~~--~h~v~~i~-~~v~IsNgl~Wd~d~K~fY~iDsln 179 (310)
T KOG4499|consen 105 DR-KKNRLNDGKVDPDGRYY-GGTMADFGDDLEPIGGELYSWLA--GHQVELIW-NCVGISNGLAWDSDAKKFYYIDSLN 179 (310)
T ss_pred hH-HhcccccCccCCCCcee-eeeeccccccccccccEEEEecc--CCCceeee-hhccCCccccccccCcEEEEEccCc
Confidence 11 13456677788999884 3332 1 33444432 11122222 2233447889998887667777788
Q ss_pred CeEEEee--CCCCCcce---EEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCcc
Q 017194 169 SKLVMWD--FSKGRPNK---IVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESEL 241 (375)
Q Consensus 169 ~~i~~wd--~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~ 241 (375)
-.|.-|| ..+|.... .+.+.. .+...+...-.+++.. +|.+.++.-..++|..+|..+++
T Consensus 180 ~~V~a~dyd~~tG~~snr~~i~dlrk-------~~~~e~~~PDGm~ID~------eG~L~Va~~ng~~V~~~dp~tGK 244 (310)
T KOG4499|consen 180 YEVDAYDYDCPTGDLSNRKVIFDLRK-------SQPFESLEPDGMTIDT------EGNLYVATFNGGTVQKVDPTTGK 244 (310)
T ss_pred eEEeeeecCCCcccccCcceeEEecc-------CCCcCCCCCCcceEcc------CCcEEEEEecCcEEEEECCCCCc
Confidence 8887787 45543221 111110 0000111222344443 68888888888999999999864
No 392
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.36 E-value=0.0013 Score=60.66 Aligned_cols=102 Identities=17% Similarity=0.260 Sum_probs=75.2
Q ss_pred CCCeEEEEcCCCeEEEEECCCCCcccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCceeeeeEecCcccc
Q 017194 69 GNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSI 148 (375)
Q Consensus 69 ~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 148 (375)
.+..++.|+..|.+-..|+... +.++..-..-.++|++++|+.+|+.++.|-.+|.|.+||+..++.++.+. .|..+
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~n--L~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~-e~~ap 174 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGN--LGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVIT-EHGAP 174 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcc--cchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeee-ecCCc
Confidence 3456888888899988887743 22222222336899999999999999999999999999999999988887 66666
Q ss_pred eeEEEE---eeCCCcEEEEeecCCeEEEeeC
Q 017194 149 CSSVQF---IPWKPWEVISGGLDSKLVMWDF 176 (375)
Q Consensus 149 v~~~~~---~~~~~~~l~~~~~d~~i~~wd~ 176 (375)
.+++-+ ..++. .++++...|. +|.+
T Consensus 175 ~t~vi~v~~t~~nS-~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 175 VTGVIFVGRTSQNS-KLLTSDTGGS--FWKL 202 (1206)
T ss_pred cceEEEEEEeCCCc-EEEEccCCCc--eEEE
Confidence 555543 34444 5777777776 5554
No 393
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.32 E-value=0.055 Score=43.04 Aligned_cols=173 Identities=9% Similarity=0.064 Sum_probs=107.2
Q ss_pred ecCccEEEEEEeCCCCeEEEEcCCCeEEEEECCCCCcccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCc
Q 017194 56 VGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQH 135 (375)
Q Consensus 56 ~~~~~v~~l~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 135 (375)
+-...+.++.|+|+.+.|++......-.++=...|+.+..+.-. + -.....+.+..++++.++--.++.+.++.+...
T Consensus 83 g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~-g-~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~ 160 (316)
T COG3204 83 GETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLT-G-FSDPETIEYIGGNQFVIVDERDRALYLFTVDAD 160 (316)
T ss_pred cccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEeccc-c-cCChhHeEEecCCEEEEEehhcceEEEEEEcCC
Confidence 34455999999999999998887766666655555544443322 1 234456778888888888778888888877654
Q ss_pred eeeeeEe-------c-Cc-ccceeEEEEeeCCCcEEEEeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCcee
Q 017194 136 CLYKSLR-------A-GH-SSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVH 206 (375)
Q Consensus 136 ~~~~~~~-------~-~~-~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 206 (375)
..+..+. . .+ +.....++|.|.+. .|+.+-+-.-+.+|.+......-..... .... ....+.-..+.
T Consensus 161 t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~-~l~~aKEr~P~~I~~~~~~~~~l~~~~~--~~~~-~~~~~f~~DvS 236 (316)
T COG3204 161 TTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDH-RLFVAKERNPIGIFEVTQSPSSLSVHAS--LDPT-ADRDLFVLDVS 236 (316)
T ss_pred ccEEeccceEEeccccCCCCcCceeeecCCCCc-eEEEEEccCCcEEEEEecCCcccccccc--cCcc-cccceEeeccc
Confidence 2222111 0 12 55778999999988 6777777777777776533211111100 0000 00001123456
Q ss_pred EEeecCCccccCCCCEEEEEecCCcEEEEeCCC
Q 017194 207 AIAIPDADMLDKTNKICVVAKGDGVVDVINIES 239 (375)
Q Consensus 207 ~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 239 (375)
++.|.+. .+.+|+-+.+++.+.-.|...
T Consensus 237 gl~~~~~-----~~~LLVLS~ESr~l~Evd~~G 264 (316)
T COG3204 237 GLEFNAI-----TNSLLVLSDESRRLLEVDLSG 264 (316)
T ss_pred cceecCC-----CCcEEEEecCCceEEEEecCC
Confidence 6777764 678888888888888888775
No 394
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.22 E-value=0.086 Score=43.12 Aligned_cols=147 Identities=14% Similarity=0.171 Sum_probs=92.1
Q ss_pred CCEEEEeCCCCcEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEEcCCCeEEEEECCCCCcccccc----------
Q 017194 28 PGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLE---------- 97 (375)
Q Consensus 28 ~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~---------- 97 (375)
++.|+.|..+| +.+++.........+. +..+|..+...|+-+.|++-+ |+.++++++..-.......
T Consensus 7 ~~~L~vGt~~G-l~~~~~~~~~~~~~i~-~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~~~~ 83 (275)
T PF00780_consen 7 GDRLLVGTEDG-LYVYDLSDPSKPTRIL-KLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKSRSL 83 (275)
T ss_pred CCEEEEEECCC-EEEEEecCCccceeEe-ecceEEEEEEecccCEEEEEc-CCccEEEEchhhccccccccccccccccc
Confidence 67899999998 8999983222222222 234499999999888777666 6999999987532222110
Q ss_pred --cccCCCcceeEEE--EcCCC-CeEEEEeCCCcEEEEeCcCc-----eeeeeEecCcccceeEEEEeeCCCcEEEEeec
Q 017194 98 --SYNYNKEEINQIV--CNPKS-SFLACADDGGDVKIIDIRQH-----CLYKSLRAGHSSICSSVQFIPWKPWEVISGGL 167 (375)
Q Consensus 98 --~~~~~~~~v~~~~--~~~~~-~~l~~~~~dg~i~iwd~~~~-----~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~ 167 (375)
.. .....+...+ -...+ ..|+++ ....|.+|..... +..+.+. -...+.+++|.++ .++.|..
T Consensus 84 ~~~~-~~~~~v~~f~~~~~~~~~~~L~va-~kk~i~i~~~~~~~~~f~~~~ke~~--lp~~~~~i~~~~~---~i~v~~~ 156 (275)
T PF00780_consen 84 PTKL-PETKGVSFFAVNGGHEGSRRLCVA-VKKKILIYEWNDPRNSFSKLLKEIS--LPDPPSSIAFLGN---KICVGTS 156 (275)
T ss_pred cccc-cccCCeeEEeeccccccceEEEEE-ECCEEEEEEEECCcccccceeEEEE--cCCCcEEEEEeCC---EEEEEeC
Confidence 11 1123344444 11233 344444 4558888887653 4556665 4578899999944 5777765
Q ss_pred CCeEEEeeCCCCCcceEE
Q 017194 168 DSKLVMWDFSKGRPNKIV 185 (375)
Q Consensus 168 d~~i~~wd~~~~~~~~~~ 185 (375)
+ ...+.|+.++.....+
T Consensus 157 ~-~f~~idl~~~~~~~l~ 173 (275)
T PF00780_consen 157 K-GFYLIDLNTGSPSELL 173 (275)
T ss_pred C-ceEEEecCCCCceEEe
Confidence 4 5889999977665444
No 395
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=97.21 E-value=0.0026 Score=48.20 Aligned_cols=103 Identities=15% Similarity=0.186 Sum_probs=61.7
Q ss_pred CCeEEEEcCCCeEEEEECCCCCcc-cccccccCCCcceeE-EEEcCCCCeEEEEeCCCcEEEEeCcCceeeeeEecCcc-
Q 017194 70 NEDIIYVSSGKEVKSFDVHMPASW-RPLESYNYNKEEINQ-IVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHS- 146 (375)
Q Consensus 70 ~~~l~~~~~d~~i~iwd~~~~~~~-~~~~~~~~~~~~v~~-~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~- 146 (375)
+..++.|+.+|.|++|+....... ..+... ...|.+ +.-..++.+..+++.+|.|+.|++.-.+.+.... .|.
T Consensus 70 ~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~---~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g-~h~~ 145 (238)
T KOG2444|consen 70 SAKLMVGTSDGAVYVFNWNLEGAHSDRVCSG---EESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVG-QHNF 145 (238)
T ss_pred CceEEeecccceEEEecCCccchHHHhhhcc---cccceeccccccccceeEEeccCCceeeeccccCceeeeec-cccC
Confidence 456889999999999987621111 111111 222322 3333356688899999999999998887776666 666
Q ss_pred cceeEEEEeeCCCcEEEEe--ecCCeEEEeeCC
Q 017194 147 SICSSVQFIPWKPWEVISG--GLDSKLVMWDFS 177 (375)
Q Consensus 147 ~~v~~~~~~~~~~~~l~~~--~~d~~i~~wd~~ 177 (375)
.++..+..+..++ +++.+ +.|..++.|++.
T Consensus 146 ~~~e~~ivv~sd~-~i~~a~~S~d~~~k~W~ve 177 (238)
T KOG2444|consen 146 ESGEELIVVGSDE-FLKIADTSHDRVLKKWNVE 177 (238)
T ss_pred CCcceeEEecCCc-eEEeeccccchhhhhcchh
Confidence 3444433343333 34444 555555555554
No 396
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=97.19 E-value=0.093 Score=43.01 Aligned_cols=155 Identities=15% Similarity=0.172 Sum_probs=81.0
Q ss_pred CCCceeEEEEecCCCCEEEEeCCCCcEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEEcCCCeEEEEE-CCCCCc
Q 017194 14 HKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFD-VHMPAS 92 (375)
Q Consensus 14 h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i~iwd-~~~~~~ 92 (375)
-.+.+..+..+++ +++++++..-....-|+.....-...-......|.++.|.|++...+ ....|.|+.=+ ......
T Consensus 143 ~~gs~~~~~r~~d-G~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~-~~~Gg~~~~s~~~~~~~~ 220 (302)
T PF14870_consen 143 TSGSINDITRSSD-GRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWM-LARGGQIQFSDDPDDGET 220 (302)
T ss_dssp ----EEEEEE-TT-S-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEE-EETTTEEEEEE-TTEEEE
T ss_pred CcceeEeEEECCC-CcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEE-EeCCcEEEEccCCCCccc
Confidence 3466888888888 88998887766667787543222222233468899999999987655 44788888887 222222
Q ss_pred ccc-cccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCceeeeeEec--CcccceeEEEEeeCCCcEEEEeecCC
Q 017194 93 WRP-LESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRA--GHSSICSSVQFIPWKPWEVISGGLDS 169 (375)
Q Consensus 93 ~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~~~~~d~ 169 (375)
+.. +.........+..++|.+++...++|+ .|.+ +...+.++.=+..+. .-...+..+.|.+..+ -+..+.+|
T Consensus 221 w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg-~G~l-~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~--gf~lG~~G 296 (302)
T PF14870_consen 221 WSEPIIPIKTNGYGILDLAYRPPNEIWAVGG-SGTL-LVSTDGGKTWQKDRVGENVPSNLYRIVFVNPDK--GFVLGQDG 296 (302)
T ss_dssp E---B-TTSS--S-EEEEEESSSS-EEEEES-TT-E-EEESSTTSS-EE-GGGTTSSS---EEEEEETTE--EEEE-STT
T ss_pred cccccCCcccCceeeEEEEecCCCCEEEEeC-CccE-EEeCCCCccceECccccCCCCceEEEEEcCCCc--eEEECCCc
Confidence 211 111111234588999999887777664 4544 344455554333331 2244678888887654 45556778
Q ss_pred eEEEe
Q 017194 170 KLVMW 174 (375)
Q Consensus 170 ~i~~w 174 (375)
.|.-|
T Consensus 297 ~ll~~ 301 (302)
T PF14870_consen 297 VLLRY 301 (302)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 77655
No 397
>PHA03098 kelch-like protein; Provisional
Probab=97.16 E-value=0.12 Score=46.94 Aligned_cols=145 Identities=10% Similarity=0.029 Sum_probs=70.7
Q ss_pred CCEEEEeCCCC------cEEEEecccCceeeE--eeecCccEEEEEEeCCCCeEEEEcCC-----CeEEEEECCCCCccc
Q 017194 28 PGFVASSGEDG------CICWFDLRSKDVQLV--TDVGNGPVTSLCFKSGNEDIIYVSSG-----KEVKSFDVHMPASWR 94 (375)
Q Consensus 28 ~~~l~s~~~d~------~i~iw~~~~~~~~~~--~~~~~~~v~~l~~~~~~~~l~~~~~d-----~~i~iwd~~~~~~~~ 94 (375)
+.+++.||.++ .+..||..+.+-... +.........+ .-+++..+.|+.+ ..+..||..+++ +.
T Consensus 295 ~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~--~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~-W~ 371 (534)
T PHA03098 295 NVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVT--VFNNRIYVIGGIYNSISLNTVESWKPGESK-WR 371 (534)
T ss_pred CEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEE--EECCEEEEEeCCCCCEecceEEEEcCCCCc-ee
Confidence 45667776542 467788776554221 11111111222 2356677777765 357788887543 34
Q ss_pred ccccccCCCcceeEEEEcCCCCeEEEEeCC------CcEEEEeCcCceee--eeEecCcccceeEEEEeeCCCcEEEEee
Q 017194 95 PLESYNYNKEEINQIVCNPKSSFLACADDG------GDVKIIDIRQHCLY--KSLRAGHSSICSSVQFIPWKPWEVISGG 166 (375)
Q Consensus 95 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d------g~i~iwd~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~l~~~~ 166 (375)
............ +++ .-+++.++.|+.+ ..+..||+.+.+-. ..+. ..... .++ ...++. +++.|+
T Consensus 372 ~~~~lp~~r~~~-~~~-~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p-~~r~~-~~~-~~~~~~-iyv~GG 445 (534)
T PHA03098 372 EEPPLIFPRYNP-CVV-NVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLP-ISHYG-GCA-IYHDGK-IYVIGG 445 (534)
T ss_pred eCCCcCcCCccc-eEE-EECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCC-ccccC-ceE-EEECCE-EEEECC
Confidence 333322111111 112 2256666666632 35888998765321 1111 11111 122 223444 667776
Q ss_pred cC--------CeEEEeeCCCCCc
Q 017194 167 LD--------SKLVMWDFSKGRP 181 (375)
Q Consensus 167 ~d--------~~i~~wd~~~~~~ 181 (375)
.+ ..+..||..+++-
T Consensus 446 ~~~~~~~~~~~~v~~yd~~~~~W 468 (534)
T PHA03098 446 ISYIDNIKVYNIVESYNPVTNKW 468 (534)
T ss_pred ccCCCCCcccceEEEecCCCCce
Confidence 43 2378888876654
No 398
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=97.15 E-value=0.0018 Score=35.99 Aligned_cols=33 Identities=18% Similarity=0.271 Sum_probs=29.2
Q ss_pred CCceeEEEEecCCCCEEEEeCCCCcEEEEecccCc
Q 017194 15 KATATCCIASRDRPGFVASSGEDGCICWFDLRSKD 49 (375)
Q Consensus 15 ~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~ 49 (375)
...|.+++|+|. ..+||.+..+|.|.++.+ +++
T Consensus 11 ~~~v~~~~w~P~-mdLiA~~t~~g~v~v~Rl-~~q 43 (47)
T PF12894_consen 11 PSRVSCMSWCPT-MDLIALGTEDGEVLVYRL-NWQ 43 (47)
T ss_pred CCcEEEEEECCC-CCEEEEEECCCeEEEEEC-CCc
Confidence 457999999999 899999999999999998 444
No 399
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=97.08 E-value=0.0022 Score=35.63 Aligned_cols=34 Identities=15% Similarity=0.233 Sum_probs=29.8
Q ss_pred ccceeEEEEeeCCCcEEEEeecCCeEEEeeCCCCCc
Q 017194 146 SSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRP 181 (375)
Q Consensus 146 ~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~ 181 (375)
...|..++|+|..+ ++|.++.+|.|.+|.+ +++.
T Consensus 11 ~~~v~~~~w~P~md-LiA~~t~~g~v~v~Rl-~~qr 44 (47)
T PF12894_consen 11 PSRVSCMSWCPTMD-LIALGTEDGEVLVYRL-NWQR 44 (47)
T ss_pred CCcEEEEEECCCCC-EEEEEECCCeEEEEEC-CCcC
Confidence 45799999999999 8999999999999998 4544
No 400
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.08 E-value=0.003 Score=58.49 Aligned_cols=103 Identities=16% Similarity=0.164 Sum_probs=72.7
Q ss_pred CCEEEEeCCCCcEEEEecccCce-eeEeeecCccEEEEEEeCCCCeEEEEcCCCeEEEEECCCCCcccccccccCCCcce
Q 017194 28 PGFVASSGEDGCICWFDLRSKDV-QLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEI 106 (375)
Q Consensus 28 ~~~l~s~~~d~~i~iw~~~~~~~-~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v 106 (375)
+..++.|+..|.+...|....-. ...=..-..+|++++|+.+|..++.|-.+|.|.+||...++..+.+.........|
T Consensus 99 ~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~v 178 (1206)
T KOG2079|consen 99 VVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTGV 178 (1206)
T ss_pred eeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccceE
Confidence 44688888888888888764321 11112236899999999999999999999999999999776666665544333445
Q ss_pred eEEEEcCCCCeEEEEeCCCcEEEEeC
Q 017194 107 NQIVCNPKSSFLACADDGGDVKIIDI 132 (375)
Q Consensus 107 ~~~~~~~~~~~l~~~~~dg~i~iwd~ 132 (375)
..+.+..++..++++...|. +|.+
T Consensus 179 i~v~~t~~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 179 IFVGRTSQNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred EEEEEeCCCcEEEEccCCCc--eEEE
Confidence 55555566667888877776 4543
No 401
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=97.08 E-value=0.16 Score=43.67 Aligned_cols=148 Identities=11% Similarity=0.206 Sum_probs=89.1
Q ss_pred cCCCCEEEEeCCCCcEEEEecccCce-----eeEeeecCccEEEEEEeC-----CCCeEEEEcCCCeEEEEECCCCCcc-
Q 017194 25 RDRPGFVASSGEDGCICWFDLRSKDV-----QLVTDVGNGPVTSLCFKS-----GNEDIIYVSSGKEVKSFDVHMPASW- 93 (375)
Q Consensus 25 ~~~~~~l~s~~~d~~i~iw~~~~~~~-----~~~~~~~~~~v~~l~~~~-----~~~~l~~~~~d~~i~iwd~~~~~~~- 93 (375)
+++...|++|+..|.++||+...++. +.+.+ -..+|..+..-. +...||. =.-+.+.+|.+......
T Consensus 34 ~~~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~-l~~PILqv~~G~F~s~~~~~~LaV-LhP~kl~vY~v~~~~g~~ 111 (418)
T PF14727_consen 34 PSGSDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQ-LKDPILQVECGKFVSGSEDLQLAV-LHPRKLSVYSVSLVDGTV 111 (418)
T ss_pred CCCccEEEEeccccEEEEEccCCCCCCCccEEEEEe-cCCcEEEEEeccccCCCCcceEEE-ecCCEEEEEEEEecCCCc
Confidence 33456899999999999999865442 11222 257888877632 2233443 44678888887321100
Q ss_pred -----cccccccCCC--cceeEEEEcC----C-CCeEEEEeCCCcEEEEeCcCceeeeeEecCcccceeEEEEeeCCCcE
Q 017194 94 -----RPLESYNYNK--EEINQIVCNP----K-SSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWE 161 (375)
Q Consensus 94 -----~~~~~~~~~~--~~v~~~~~~~----~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 161 (375)
..+.....|. .....+++-| . ..+|.+-+.||.+.+++-+.......+. . ---...+.|.+..+ .
T Consensus 112 ~~g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp-~-~llPgPl~Y~~~tD-s 188 (418)
T PF14727_consen 112 EHGNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLP-D-FLLPGPLCYCPRTD-S 188 (418)
T ss_pred ccCcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcC-C-CCCCcCeEEeecCC-E
Confidence 1111111111 1222333322 2 3578888999999999976544444443 2 33345688888887 6
Q ss_pred EEEeecCCeEEEeeCC
Q 017194 162 VISGGLDSKLVMWDFS 177 (375)
Q Consensus 162 l~~~~~d~~i~~wd~~ 177 (375)
|++++.+..+..|...
T Consensus 189 fvt~sss~~l~~Yky~ 204 (418)
T PF14727_consen 189 FVTASSSWTLECYKYQ 204 (418)
T ss_pred EEEecCceeEEEecHH
Confidence 9999999999988763
No 402
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=96.94 E-value=0.1 Score=39.25 Aligned_cols=104 Identities=6% Similarity=-0.036 Sum_probs=66.2
Q ss_pred CCCeEEEEeC--CCcEEEEeCcCceeeeeEecCcccceeEEEEeeCCCcEEEEeecCCeEEEeeCCCCCcceEEecCCCC
Q 017194 114 KSSFLACADD--GGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPE 191 (375)
Q Consensus 114 ~~~~l~~~~~--dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~ 191 (375)
++.++.+.+. ...|++||+.+++.+..-+ -....+..=-...-++++....-.+|.-..+|.++-+++..+.+.
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~-l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~y~--- 130 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEK-LAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFSYE--- 130 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEEEEee-cCCccccccceeeccceEEEEEeccceeEEEChHHhhhhcccccC---
Confidence 4455555553 4569999999888876554 211222211122224435555667899999999999988888755
Q ss_pred CCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCc
Q 017194 192 NNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESE 240 (375)
Q Consensus 192 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~ 240 (375)
+.-..++. +++.|+.++....++.-|.++.
T Consensus 131 -----------GeGWgLt~--------d~~~LimsdGsatL~frdP~tf 160 (262)
T COG3823 131 -----------GEGWGLTS--------DDKNLIMSDGSATLQFRDPKTF 160 (262)
T ss_pred -----------Ccceeeec--------CCcceEeeCCceEEEecCHHHh
Confidence 44455655 4566777766667887777764
No 403
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=96.90 E-value=0.16 Score=40.80 Aligned_cols=145 Identities=14% Similarity=0.037 Sum_probs=83.9
Q ss_pred ceeEEEEecCCCCEEEEeC-CCCcEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEEcCCCeEEEEE-CCCCCcc-
Q 017194 17 TATCCIASRDRPGFVASSG-EDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFD-VHMPASW- 93 (375)
Q Consensus 17 ~i~~~~~~~~~~~~l~s~~-~d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i~iwd-~~~~~~~- 93 (375)
.+.+.+++++ ++.+|... .++.-.||-...+.....+. ....+..-.|.+++...+....+...+++. ..++...
T Consensus 25 ~~~s~AvS~d-g~~~A~v~~~~~~~~L~~~~~~~~~~~~~-~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~~ 102 (253)
T PF10647_consen 25 DVTSPAVSPD-GSRVAAVSEGDGGRSLYVGPAGGPVRPVL-TGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGEP 102 (253)
T ss_pred cccceEECCC-CCeEEEEEEcCCCCEEEEEcCCCcceeec-cCCccccccccCCCCEEEEEcCCCceEEEEecCCCccee
Confidence 6888999999 56554433 23333344333333333332 234788889999987666666566666664 2322211
Q ss_pred cccccccCCCcceeEEEEcCCCCeEEEEe---CCCcEEEEeCc---Cc--e----eeeeEecCcccceeEEEEeeCCCcE
Q 017194 94 RPLESYNYNKEEINQIVCNPKSSFLACAD---DGGDVKIIDIR---QH--C----LYKSLRAGHSSICSSVQFIPWKPWE 161 (375)
Q Consensus 94 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---~dg~i~iwd~~---~~--~----~~~~~~~~~~~~v~~~~~~~~~~~~ 161 (375)
..+.... -...|..+.++|||..++... .++.|.+--+. .+ . ...... .....+.++.|.+++. +
T Consensus 103 ~~v~~~~-~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~-~~~~~v~~v~W~~~~~-L 179 (253)
T PF10647_consen 103 VEVDWPG-LRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAP-PLLSDVTDVAWSDDST-L 179 (253)
T ss_pred EEecccc-cCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecc-cccCcceeeeecCCCE-E
Confidence 1111111 112899999999999987665 35677776554 22 1 111111 2346889999999997 4
Q ss_pred EEEee
Q 017194 162 VISGG 166 (375)
Q Consensus 162 l~~~~ 166 (375)
++.+.
T Consensus 180 ~V~~~ 184 (253)
T PF10647_consen 180 VVLGR 184 (253)
T ss_pred EEEeC
Confidence 44443
No 404
>PHA03098 kelch-like protein; Provisional
Probab=96.85 E-value=0.35 Score=43.96 Aligned_cols=106 Identities=12% Similarity=0.075 Sum_probs=52.6
Q ss_pred CCCCeEEEEcCCC------eEEEEECCCCCcccccccccCCCcceeEEEEcCCCCeEEEEeCC-----CcEEEEeCcCce
Q 017194 68 SGNEDIIYVSSGK------EVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDG-----GDVKIIDIRQHC 136 (375)
Q Consensus 68 ~~~~~l~~~~~d~------~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~ 136 (375)
.++..++.|+.++ .+..||..+.+ +..+............+. -+++.++.|+.+ ..+..||..+.+
T Consensus 293 ~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~-W~~~~~~~~~R~~~~~~~--~~~~lyv~GG~~~~~~~~~v~~yd~~~~~ 369 (534)
T PHA03098 293 LNNVIYFIGGMNKNNLSVNSVVSYDTKTKS-WNKVPELIYPRKNPGVTV--FNNRIYVIGGIYNSISLNTVESWKPGESK 369 (534)
T ss_pred ECCEEEEECCCcCCCCeeccEEEEeCCCCe-eeECCCCCcccccceEEE--ECCEEEEEeCCCCCEecceEEEEcCCCCc
Confidence 3455666666542 57788887643 333333321111222222 256677777754 347778877553
Q ss_pred e--eeeEecCcccceeEEEEeeCCCcEEEEeecC------CeEEEeeCCCCC
Q 017194 137 L--YKSLRAGHSSICSSVQFIPWKPWEVISGGLD------SKLVMWDFSKGR 180 (375)
Q Consensus 137 ~--~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d------~~i~~wd~~~~~ 180 (375)
- ...+. ..... .+++. -++. +++.|+.+ ..+..||..+.+
T Consensus 370 W~~~~~lp-~~r~~-~~~~~-~~~~-iYv~GG~~~~~~~~~~v~~yd~~t~~ 417 (534)
T PHA03098 370 WREEPPLI-FPRYN-PCVVN-VNNL-IYVIGGISKNDELLKTVECFSLNTNK 417 (534)
T ss_pred eeeCCCcC-cCCcc-ceEEE-ECCE-EEEECCcCCCCcccceEEEEeCCCCe
Confidence 2 11221 11111 11222 2344 67777632 357888887654
No 405
>PHA02790 Kelch-like protein; Provisional
Probab=96.84 E-value=0.23 Score=44.27 Aligned_cols=182 Identities=9% Similarity=-0.068 Sum_probs=88.5
Q ss_pred CCEEEEeCCCC-----cEEEEecccCceee--EeeecCccEEEEEEeCCCCeEEEEcCC--CeEEEEECCCCCccccccc
Q 017194 28 PGFVASSGEDG-----CICWFDLRSKDVQL--VTDVGNGPVTSLCFKSGNEDIIYVSSG--KEVKSFDVHMPASWRPLES 98 (375)
Q Consensus 28 ~~~l~s~~~d~-----~i~iw~~~~~~~~~--~~~~~~~~v~~l~~~~~~~~l~~~~~d--~~i~iwd~~~~~~~~~~~~ 98 (375)
+.+++.||.++ ++..||..+++-.. .+....... +++ .-++...+.|+.+ ..+..||..++ .+..+..
T Consensus 272 ~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~-~~v-~~~~~iYviGG~~~~~sve~ydp~~n-~W~~~~~ 348 (480)
T PHA02790 272 EVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYA-SGV-PANNKLYVVGGLPNPTSVERWFHGDA-AWVNMPS 348 (480)
T ss_pred CEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcc-eEE-EECCEEEEECCcCCCCceEEEECCCC-eEEECCC
Confidence 45667777543 46678877654322 222111111 222 2356666777653 36788887654 2444443
Q ss_pred ccCCCcceeEEEEcCCCCeEEEEeCCC---cEEEEeCcCceee--eeEecCcccceeEEEEeeCCCcEEEEeecCCeEEE
Q 017194 99 YNYNKEEINQIVCNPKSSFLACADDGG---DVKIIDIRQHCLY--KSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVM 173 (375)
Q Consensus 99 ~~~~~~~v~~~~~~~~~~~l~~~~~dg---~i~iwd~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~ 173 (375)
+.........+ .-+++..+.|+.++ .+..||.++.+=. ..+. ...... ++ ..-++. +.+.|+ .+.+
T Consensus 349 l~~~r~~~~~~--~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~-~~r~~~-~~-~~~~~~-IYv~GG---~~e~ 419 (480)
T PHA02790 349 LLKPRCNPAVA--SINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTY-YPHYKS-CA-LVFGRR-LFLVGR---NAEF 419 (480)
T ss_pred CCCCCcccEEE--EECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCC-Cccccc-eE-EEECCE-EEEECC---ceEE
Confidence 32111111112 23566777777543 4678887655321 1111 111111 22 223444 566663 5778
Q ss_pred eeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecC-----CcEEEEeCCCc
Q 017194 174 WDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGD-----GVVDVINIESE 240 (375)
Q Consensus 174 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~ 240 (375)
||.++++-...-... .+..-.+++.. ++++.++|+.+ ..+..||..++
T Consensus 420 ydp~~~~W~~~~~m~------------~~r~~~~~~v~-------~~~IYviGG~~~~~~~~~ve~Yd~~~~ 472 (480)
T PHA02790 420 YCESSNTWTLIDDPI------------YPRDNPELIIV-------DNKLLLIGGFYRGSYIDTIEVYNNRTY 472 (480)
T ss_pred ecCCCCcEeEcCCCC------------CCccccEEEEE-------CCEEEEECCcCCCcccceEEEEECCCC
Confidence 888765433221111 11111223333 57888888754 35777877753
No 406
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=96.67 E-value=0.41 Score=42.25 Aligned_cols=153 Identities=14% Similarity=0.096 Sum_probs=88.8
Q ss_pred CceeEEEEecCCCCEEEEeC--CCCcEEEEecccCceeeEeeecCccEEEEEEeCC----CCeEEEEcCCCeEEEEECCC
Q 017194 16 ATATCCIASRDRPGFVASSG--EDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSG----NEDIIYVSSGKEVKSFDVHM 89 (375)
Q Consensus 16 ~~i~~~~~~~~~~~~l~s~~--~d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~----~~~l~~~~~d~~i~iwd~~~ 89 (375)
.+|..++|. |+.+.++|.- .+|.++.=| ...+ +.-+.|..+.|.|- ...|++....+.|.||.+..
T Consensus 20 HPvhGlaWT-DGkqVvLT~L~l~~gE~kfGd---s~vi----GqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~ 91 (671)
T PF15390_consen 20 HPVHGLAWT-DGKQVVLTDLQLHNGEPKFGD---SKVI----GQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCP 91 (671)
T ss_pred ccccceEec-CCCEEEEEeeeeeCCccccCC---ccEe----eccceeeeeeecCcccCCCCceEEEeccceEEEEEecc
Confidence 478888886 3234444432 122222111 1112 23456899999885 34577777789999999862
Q ss_pred C--CcccccccccCC-----CcceeEEEEcCCCCeEEEEeCCCcEEEEeCcC--ceeeeeEecCcccceeEEEEeeCCCc
Q 017194 90 P--ASWRPLESYNYN-----KEEINQIVCNPKSSFLACADDGGDVKIIDIRQ--HCLYKSLRAGHSSICSSVQFIPWKPW 160 (375)
Q Consensus 90 ~--~~~~~~~~~~~~-----~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~ 160 (375)
. +..+.+.....+ .---..+.|+|....|++-.....-.+++++. .+....++ -.+.|.|.+|.+||+.
T Consensus 92 s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi~--~~G~IhCACWT~DG~R 169 (671)
T PF15390_consen 92 STTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADIK--TSGLIHCACWTKDGQR 169 (671)
T ss_pred CccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEecc--CCceEEEEEecCcCCE
Confidence 1 111111111000 01124578999988887766554444556553 34444454 5678999999999996
Q ss_pred EEEEeecCCeEEEeeCCC
Q 017194 161 EVISGGLDSKLVMWDFSK 178 (375)
Q Consensus 161 ~l~~~~~d~~i~~wd~~~ 178 (375)
+++..+..=.-++||-..
T Consensus 170 LVVAvGSsLHSyiWd~~q 187 (671)
T PF15390_consen 170 LVVAVGSSLHSYIWDSAQ 187 (671)
T ss_pred EEEEeCCeEEEEEecCch
Confidence 555555555678998543
No 407
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=96.67 E-value=0.58 Score=44.00 Aligned_cols=207 Identities=13% Similarity=0.087 Sum_probs=114.5
Q ss_pred CEEEEeCCCCcEEEEecccCceeeEeeecCcc--------EEEEEEeC----------------CCCeEEEEcCCCeEEE
Q 017194 29 GFVASSGEDGCICWFDLRSKDVQLVTDVGNGP--------VTSLCFKS----------------GNEDIIYVSSGKEVKS 84 (375)
Q Consensus 29 ~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~--------v~~l~~~~----------------~~~~l~~~~~d~~i~i 84 (375)
..|+.++.++.|.-.|..+|+.+-.+...... ...+.+.. .+..++.++.|+.+.-
T Consensus 195 g~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~LiA 274 (764)
T TIGR03074 195 DTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLIA 274 (764)
T ss_pred CEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEEE
Confidence 46777788889999999999987776532210 11233321 2347888888999999
Q ss_pred EECCCCCccccccc-----cc----CCCcceeEEEEcC--CCCeEEEEeC----------CCcEEEEeCcCceeeeeEec
Q 017194 85 FDVHMPASWRPLES-----YN----YNKEEINQIVCNP--KSSFLACADD----------GGDVKIIDIRQHCLYKSLRA 143 (375)
Q Consensus 85 wd~~~~~~~~~~~~-----~~----~~~~~v~~~~~~~--~~~~l~~~~~----------dg~i~iwd~~~~~~~~~~~~ 143 (375)
.|.++++....+.. +. .....-..+.-.| .+..+++|+. +|.|+-+|.++++.+-.+..
T Consensus 275 LDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~~~ 354 (764)
T TIGR03074 275 LDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAWDP 354 (764)
T ss_pred EECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEEec
Confidence 99998876533221 00 0000000111122 1335666642 68899999999998877652
Q ss_pred Ccc--------c--------ce-eEEEEeeCCCcEEEEee------------------cCCeEEEeeCCCCCcceEEecC
Q 017194 144 GHS--------S--------IC-SSVQFIPWKPWEVISGG------------------LDSKLVMWDFSKGRPNKIVNFG 188 (375)
Q Consensus 144 ~~~--------~--------~v-~~~~~~~~~~~~l~~~~------------------~d~~i~~wd~~~~~~~~~~~~~ 188 (375)
+.. + .+ ..+++.++.. ++..+. ..+.|.-.|.++|+....++..
T Consensus 355 g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~g-lvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~TGk~~W~~Q~~ 433 (764)
T TIGR03074 355 GNPDPTAPPAPGETYTRNTPNSWSVASYDEKLG-LVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDATTGKERWVFQTV 433 (764)
T ss_pred CCCCcccCCCCCCEeccCCCCccCceEEcCCCC-eEEEeCCCccccccCCccccCcccccceEEEEeCCCCceEEEeccc
Confidence 110 0 11 2234444433 222211 2356777788888877777642
Q ss_pred CCCCCCCCCcccCCCceeEEeecCCccccCCC---CEEEEEecCCcEEEEeCCCcceeec
Q 017194 189 LPENNGNAGQCYNPAFVHAIAIPDADMLDKTN---KICVVAKGDGVVDVINIESELNISR 245 (375)
Q Consensus 189 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~---~~l~~~~~dg~i~i~d~~~~~~~~~ 245 (375)
+.+.-+ .- ......-+.+.. .++ ..++.++.+|.+.++|.++++.+..
T Consensus 434 ~hD~WD---~D-~~~~p~L~d~~~-----~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~ 484 (764)
T TIGR03074 434 HHDLWD---MD-VPAQPSLVDLPD-----ADGTTVPALVAPTKQGQIYVLDRRTGEPIVP 484 (764)
T ss_pred CCcccc---cc-ccCCceEEeeec-----CCCcEeeEEEEECCCCEEEEEECCCCCEEee
Confidence 100000 00 000111111111 034 3789999999999999999877654
No 408
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.65 E-value=0.2 Score=45.30 Aligned_cols=186 Identities=10% Similarity=0.070 Sum_probs=93.5
Q ss_pred CcEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEEcCCCeEEEEECCCCCccccc-ccccCCCcceeEEEEcCCCC
Q 017194 38 GCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPL-ESYNYNKEEINQIVCNPKSS 116 (375)
Q Consensus 38 ~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~ 116 (375)
-.|+|++.. |..+..+.-....+-.+.|+.+.. |+....+|++++|++-.. ..+.. ...+.....|..+.+..+|-
T Consensus 64 ~~I~If~~s-G~lL~~~~w~~~~lI~mgWs~~ee-LI~v~k~g~v~Vy~~~ge-~ie~~svg~e~~~~~I~ec~~f~~GV 140 (829)
T KOG2280|consen 64 PYIRIFNIS-GQLLGRILWKHGELIGMGWSDDEE-LICVQKDGTVHVYGLLGE-FIESNSVGFESQMSDIVECRFFHNGV 140 (829)
T ss_pred eeEEEEecc-ccchHHHHhcCCCeeeecccCCce-EEEEeccceEEEeecchh-hhcccccccccccCceeEEEEecCce
Confidence 358888864 666555544445888999997664 677788999999998632 22221 11111234566666666663
Q ss_pred eEEEEeCCCcEEEEeCcCceeeeeEec--CcccceeEEEEeeCCCc--EEEEee-cCCeEEEeeCCCCCcceEEecCCCC
Q 017194 117 FLACADDGGDVKIIDIRQHCLYKSLRA--GHSSICSSVQFIPWKPW--EVISGG-LDSKLVMWDFSKGRPNKIVNFGLPE 191 (375)
Q Consensus 117 ~l~~~~~dg~i~iwd~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~--~l~~~~-~d~~i~~wd~~~~~~~~~~~~~~~~ 191 (375)
.++ ..+|.+.+-+-.....+..++. ....+-.+-...+++.. .++-.. ..+ ..++-.... ......+.
T Consensus 141 avl--t~~g~v~~i~~~~~~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~-~~~~q~~~~-~~q~~~~~--- 213 (829)
T KOG2280|consen 141 AVL--TVSGQVILINGVEEPKLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVG-LHICQVEES-RVQLHALS--- 213 (829)
T ss_pred EEE--ecCCcEEEEcCCCcchhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhh-hcccceecc-cccccccC---
Confidence 333 3445555443222212223321 11111122222222211 111111 000 001111110 01111111
Q ss_pred CCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCcceeeccc
Q 017194 192 NNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSK 247 (375)
Q Consensus 192 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 247 (375)
.....+..+.++| +.++|+--...|.|.+-+....+......
T Consensus 214 --------~~~~~~~ki~VS~------n~~~laLyt~~G~i~~vs~D~~~~lce~~ 255 (829)
T KOG2280|consen 214 --------WPNSSVVKISVSP------NRRFLALYTETGKIWVVSIDLSQILCEFN 255 (829)
T ss_pred --------CCCceEEEEEEcC------CcceEEEEecCCcEEEEecchhhhhhccC
Confidence 0125677888988 79999999999999998887655444443
No 409
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=96.60 E-value=0.22 Score=38.31 Aligned_cols=136 Identities=8% Similarity=-0.071 Sum_probs=85.0
Q ss_pred CccEEEEEEeCCCCeEEEEcC---------CCeEEEEECCCCCcccccccccCCCcceeEEEEcCCCCeEEE-EeCCCcE
Q 017194 58 NGPVTSLCFKSGNEDIIYVSS---------GKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLAC-ADDGGDV 127 (375)
Q Consensus 58 ~~~v~~l~~~~~~~~l~~~~~---------d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~dg~i 127 (375)
+...+.-..+|+|++.+-.-. .|.++.|-... ..+.+... -.--+.++|+.+.+.+.. -+.+-+|
T Consensus 108 knR~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~h--~v~~i~~~---v~IsNgl~Wd~d~K~fY~iDsln~~V 182 (310)
T KOG4499|consen 108 KNRLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAGH--QVELIWNC---VGISNGLAWDSDAKKFYYIDSLNYEV 182 (310)
T ss_pred hcccccCccCCCCceeeeeeccccccccccccEEEEeccCC--Cceeeehh---ccCCccccccccCcEEEEEccCceEE
Confidence 344556667899988442222 25666666542 12222221 233457889887766554 4556678
Q ss_pred EEEe--CcCc-----eeeeeEec--C-cccceeEEEEeeCCCcEEEEeecCCeEEEeeCCCCCcceEEecCCCCCCCCCC
Q 017194 128 KIID--IRQH-----CLYKSLRA--G-HSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAG 197 (375)
Q Consensus 128 ~iwd--~~~~-----~~~~~~~~--~-~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~ 197 (375)
.-|| ..++ +.+..++. . ..-..-.++...+|. ++++.-..++|...|..+|+.+.+++++
T Consensus 183 ~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~-L~Va~~ng~~V~~~dp~tGK~L~eiklP--------- 252 (310)
T KOG4499|consen 183 DAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGN-LYVATFNGGTVQKVDPTTGKILLEIKLP--------- 252 (310)
T ss_pred eeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCc-EEEEEecCcEEEEECCCCCcEEEEEEcC---------
Confidence 7787 4444 23333331 0 111234566666776 7888888999999999999999999987
Q ss_pred cccCCCceeEEeecC
Q 017194 198 QCYNPAFVHAIAIPD 212 (375)
Q Consensus 198 ~~~~~~~v~~~~~~~ 212 (375)
...+++.+|--
T Consensus 253 ----t~qitsccFgG 263 (310)
T KOG4499|consen 253 ----TPQITSCCFGG 263 (310)
T ss_pred ----CCceEEEEecC
Confidence 56899999963
No 410
>PRK13684 Ycf48-like protein; Provisional
Probab=96.58 E-value=0.38 Score=40.59 Aligned_cols=154 Identities=12% Similarity=0.069 Sum_probs=87.2
Q ss_pred CCceeEEEEecCCCCEEEEeCCCCcEEE-EecccCceeeEe-eecCccEEEEEEeCCCCeEEEEcCCCeEEEEECCCCCc
Q 017194 15 KATATCCIASRDRPGFVASSGEDGCICW-FDLRSKDVQLVT-DVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPAS 92 (375)
Q Consensus 15 ~~~i~~~~~~~~~~~~l~s~~~d~~i~i-w~~~~~~~~~~~-~~~~~~v~~l~~~~~~~~l~~~~~d~~i~iwd~~~~~~ 92 (375)
...+.++.+.|+ +.+++++. .|.+.. ++ ..++.-..+ ..-...++++.+.++++.++++ ..|.+++=....+..
T Consensus 172 ~g~~~~i~~~~~-g~~v~~g~-~G~i~~s~~-~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~s 247 (334)
T PRK13684 172 AGVVRNLRRSPD-GKYVAVSS-RGNFYSTWE-PGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLES 247 (334)
T ss_pred cceEEEEEECCC-CeEEEEeC-CceEEEEcC-CCCCeEEEeeCCCcccceeeeEcCCCCEEEEe-cCCEEEEccCCCCCc
Confidence 356888899887 66666554 454433 22 122211112 2235678999999998866654 467665323444444
Q ss_pred ccccccccC-CCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCceeeeeEe--cCcccceeEEEEeeCCCcEEEEeecCC
Q 017194 93 WRPLESYNY-NKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLR--AGHSSICSSVQFIPWKPWEVISGGLDS 169 (375)
Q Consensus 93 ~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~l~~~~~d~ 169 (375)
+..+..... ....+..+.+.+++..++++ .+|.+. .....++.-.... ..-......+.|..++. .+..+..|
T Consensus 248 W~~~~~~~~~~~~~l~~v~~~~~~~~~~~G-~~G~v~-~S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~--~~~~G~~G 323 (334)
T PRK13684 248 WSKPIIPEITNGYGYLDLAYRTPGEIWAGG-GNGTLL-VSKDGGKTWEKDPVGEEVPSNFYKIVFLDPEK--GFVLGQRG 323 (334)
T ss_pred cccccCCccccccceeeEEEcCCCCEEEEc-CCCeEE-EeCCCCCCCeECCcCCCCCcceEEEEEeCCCc--eEEECCCc
Confidence 443322101 12457888999887765555 667554 3444444433332 02223577788877665 45566678
Q ss_pred eEEEeeC
Q 017194 170 KLVMWDF 176 (375)
Q Consensus 170 ~i~~wd~ 176 (375)
.|..|+-
T Consensus 324 ~il~~~~ 330 (334)
T PRK13684 324 VLLRYVG 330 (334)
T ss_pred eEEEecC
Confidence 8877763
No 411
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=96.52 E-value=0.32 Score=39.13 Aligned_cols=156 Identities=15% Similarity=0.021 Sum_probs=83.5
Q ss_pred ceeEEEEeeCCCcEEEEee-cCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEE
Q 017194 148 ICSSVQFIPWKPWEVISGG-LDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVA 226 (375)
Q Consensus 148 ~v~~~~~~~~~~~~l~~~~-~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~ 226 (375)
.+.+.++++++.. ++... .++.-.+|-...+........+ ..+..-.|++ ++...++.
T Consensus 25 ~~~s~AvS~dg~~-~A~v~~~~~~~~L~~~~~~~~~~~~~~g--------------~~l~~PS~d~------~g~~W~v~ 83 (253)
T PF10647_consen 25 DVTSPAVSPDGSR-VAAVSEGDGGRSLYVGPAGGPVRPVLTG--------------GSLTRPSWDP------DGWVWTVD 83 (253)
T ss_pred cccceEECCCCCe-EEEEEEcCCCCEEEEEcCCCcceeeccC--------------CccccccccC------CCCEEEEE
Confidence 6889999999984 44433 3333334433444444333222 3566677777 67777776
Q ss_pred ecCCcEEEEe-CCCcceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCC
Q 017194 227 KGDGVVDVIN-IESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERG 305 (375)
Q Consensus 227 ~~dg~i~i~d-~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~ 305 (375)
..+...+++. ...+... ........-...|..+.+| |||
T Consensus 84 ~~~~~~~~~~~~~~g~~~-------------------------------------~~~v~~~~~~~~I~~l~vS---pDG 123 (253)
T PF10647_consen 84 DGSGGVRVVRDSASGTGE-------------------------------------PVEVDWPGLRGRITALRVS---PDG 123 (253)
T ss_pred cCCCceEEEEecCCCcce-------------------------------------eEEecccccCCceEEEEEC---CCC
Confidence 6666666663 2221100 0000111111289999999 999
Q ss_pred cEEEEec---CCCeEEEEeCCCceeeeecchhhhhhhhcccccceeeeeecCCCCCcEEEeeC
Q 017194 306 KYLISGG---NDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDT 365 (375)
Q Consensus 306 ~~l~s~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~ 365 (375)
..+|... .++.|.+=-+.....-..................+..+.|.+ ++.+++.+..
T Consensus 124 ~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~-~~~L~V~~~~ 185 (253)
T PF10647_consen 124 TRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSD-DSTLVVLGRS 185 (253)
T ss_pred cEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecC-CCEEEEEeCC
Confidence 8777554 357777775543211100000011112223356889999998 7766665543
No 412
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=96.45 E-value=0.02 Score=30.82 Aligned_cols=32 Identities=25% Similarity=0.423 Sum_probs=27.7
Q ss_pred CceeEEEEecCCC--CEEEEeCCCCcEEEEeccc
Q 017194 16 ATATCCIASRDRP--GFVASSGEDGCICWFDLRS 47 (375)
Q Consensus 16 ~~i~~~~~~~~~~--~~l~s~~~d~~i~iw~~~~ 47 (375)
+.|.+|.|+|..+ ++|+.+-..|.|.|+|+++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 4789999998756 7899888889999999985
No 413
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=96.44 E-value=0.32 Score=41.70 Aligned_cols=143 Identities=11% Similarity=0.051 Sum_probs=77.2
Q ss_pred CceeEEEEecCCCCEEEEeC-----------CCC-cEEEEeccc--Cce--eeEeeecCccEEEEEEeCCCCeEEEEcCC
Q 017194 16 ATATCCIASRDRPGFVASSG-----------EDG-CICWFDLRS--KDV--QLVTDVGNGPVTSLCFKSGNEDIIYVSSG 79 (375)
Q Consensus 16 ~~i~~~~~~~~~~~~l~s~~-----------~d~-~i~iw~~~~--~~~--~~~~~~~~~~v~~l~~~~~~~~l~~~~~d 79 (375)
.....|+|.++ |+++++-. ..+ .|.+++-.. |.. ...+...-.....+++.+++ |++++..
T Consensus 14 ~~P~~ia~d~~-G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G--lyV~~~~ 90 (367)
T TIGR02604 14 RNPIAVCFDER-GRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG--VYVATPP 90 (367)
T ss_pred CCCceeeECCC-CCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC--EEEeCCC
Confidence 34567899998 77776642 223 677776432 222 23333333456789999888 4444444
Q ss_pred CeEEEEECCCC-----CcccccccccC----CCcceeEEEEcCCCCeEEEEeCC-------------------CcEEEEe
Q 017194 80 KEVKSFDVHMP-----ASWRPLESYNY----NKEEINQIVCNPKSSFLACADDG-------------------GDVKIID 131 (375)
Q Consensus 80 ~~i~iwd~~~~-----~~~~~~~~~~~----~~~~v~~~~~~~~~~~l~~~~~d-------------------g~i~iwd 131 (375)
...++.|.... +....+..+.. +......++|.|||.+.++-+.. |.|.-++
T Consensus 91 ~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~ 170 (367)
T TIGR02604 91 DILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYN 170 (367)
T ss_pred eEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEe
Confidence 33333344321 11112222322 13457789999999776644421 3455556
Q ss_pred CcCceeeeeEecCcccceeEEEEeeCCCcEEEE
Q 017194 132 IRQHCLYKSLRAGHSSICSSVQFIPWKPWEVIS 164 (375)
Q Consensus 132 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~ 164 (375)
..+++. ..+..++ .....++|+|+|+ ++++
T Consensus 171 pdg~~~-e~~a~G~-rnp~Gl~~d~~G~-l~~t 200 (367)
T TIGR02604 171 PDGGKL-RVVAHGF-QNPYGHSVDSWGD-VFFC 200 (367)
T ss_pred cCCCeE-EEEecCc-CCCccceECCCCC-EEEE
Confidence 554433 3333133 3457889999887 5554
No 414
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=96.43 E-value=0.84 Score=42.95 Aligned_cols=282 Identities=10% Similarity=0.027 Sum_probs=147.3
Q ss_pred CCceeEEEEecCCCCEEEEeCCCCcEEEEecccCcee-------eEeeecCccEEEEEEeCC----CCeEEEEcC---CC
Q 017194 15 KATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQ-------LVTDVGNGPVTSLCFKSG----NEDIIYVSS---GK 80 (375)
Q Consensus 15 ~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~-------~~~~~~~~~v~~l~~~~~----~~~l~~~~~---d~ 80 (375)
.+-..|+.+-++ ..|.+|+.-|.=++..+.+.... .++. .-+||..++.-.. +..+++++. ||
T Consensus 306 ~siassi~~L~n--g~lFvGS~~gdSqLi~L~~e~d~gsy~~ilet~~-NLgPI~Dm~Vvd~d~q~q~qivtCsGa~kdg 382 (1096)
T KOG1897|consen 306 TSIASSINYLDN--GVLFVGSRFGDSQLIKLNTEPDVGSYVVILETFV-NLGPIVDMCVVDLDRQGQGQIVTCSGAFKDG 382 (1096)
T ss_pred cchhhhhhcccC--ceEEEeccCCceeeEEccccCCCCchhhhhhhcc-cccceeeEEEEeccccCCceEEEEeCCCCCC
Confidence 334455555554 47888888777677766543322 2222 2457888776432 345666654 68
Q ss_pred eEEEEECCCCCcccccccccCCCcceeEEE--EcCC-CCeEEEEeCCCcEEEEeCcCceeeeeEecCcccceeEEEEeeC
Q 017194 81 EVKSFDVHMPASWRPLESYNYNKEEINQIV--CNPK-SSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPW 157 (375)
Q Consensus 81 ~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~--~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~ 157 (375)
++++..-.-+-.......+.+ ...++.+. +.++ ..+|+.+-. +.-++..+...-...... +.......+..+.-
T Consensus 383 SLRiiRngi~I~e~A~i~l~G-ikg~w~lk~~v~~~~d~ylvlsf~-~eTrvl~i~~e~ee~~~~-gf~~~~~Tif~S~i 459 (1096)
T KOG1897|consen 383 SLRIIRNGIGIDELASIDLPG-IKGMWSLKSMVDENYDNYLVLSFI-SETRVLNISEEVEETEDP-GFSTDEQTIFCSTI 459 (1096)
T ss_pred cEEEEecccccceeeEeecCC-ccceeEeeccccccCCcEEEEEec-cceEEEEEccceEEeccc-cccccCceEEEEcc
Confidence 999987543322222233333 34566666 4432 225555543 445555554321111111 23333344444332
Q ss_pred CCcEEEEeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeC
Q 017194 158 KPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINI 237 (375)
Q Consensus 158 ~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~ 237 (375)
+...++-... ..|++++-. .....+.. +..++....+. +...++.++.++.+...++
T Consensus 460 ~g~~lvQvTs-~~iRl~ss~--~~~~~W~~--------------p~~~ti~~~~~------n~sqVvvA~~~~~l~y~~i 516 (1096)
T KOG1897|consen 460 NGNQLVQVTS-NSIRLVSSA--GLRSEWRP--------------PGKITIGVVSA------NASQVVVAGGGLALFYLEI 516 (1096)
T ss_pred CCceEEEEec-ccEEEEcch--hhhhcccC--------------CCceEEEEEee------cceEEEEecCccEEEEEEe
Confidence 2213333332 357777744 23333432 23444444443 5667778877777877777
Q ss_pred CCcceeecccccCCCCCCceeeccc--ccc---eeeeeeeecCCcc-------eeEeeeeecCCCccEEEEEEeecCCCC
Q 017194 238 ESELNISRSKSTTKPLKGSQSTSKV--NIR---DAEMEILDQSGGK-------RLHLDYSVGGHTAAASCVAFSMFGERG 305 (375)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~s~~--g~~---~~~~~~~~~~~~~-------~~~~~~~~~~~~~~v~~~~~s~~~~~~ 305 (375)
................+.++.++|- ++. ++.+|.|...... ...+...+.+ ..-.+++-+..+..|.
T Consensus 517 ~~~~l~e~~~~~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~~~~~~l~~-~~iPRSIl~~~~e~d~ 595 (1096)
T KOG1897|consen 517 EDGGLREVSHKEFEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLILITHEQLSG-EIIPRSILLTTFEGDI 595 (1096)
T ss_pred eccceeeeeeheecceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCcceeeeeccCC-CccchheeeEEeeccc
Confidence 7665444444555566777777754 444 5556666544321 1111111222 2222333333333668
Q ss_pred cEEEEecCCCeEEEEeCCCce
Q 017194 306 KYLISGGNDKLVKVWDCSRFQ 326 (375)
Q Consensus 306 ~~l~s~~~dg~i~iwd~~~~~ 326 (375)
.+|.++..||.+..|.+....
T Consensus 596 ~yLlvalgdG~l~~fv~d~~t 616 (1096)
T KOG1897|consen 596 HYLLVALGDGALLYFVLDINT 616 (1096)
T ss_pred eEEEEEcCCceEEEEEEEccc
Confidence 899999999999877665543
No 415
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=96.42 E-value=0.38 Score=38.83 Aligned_cols=212 Identities=12% Similarity=0.126 Sum_probs=120.2
Q ss_pred eeEEEEecCCCCEEEEeCCCCcEEEEecc------cC-ceeeEeee-----cCccEEEEEEeCCCC------------eE
Q 017194 18 ATCCIASRDRPGFVASSGEDGCICWFDLR------SK-DVQLVTDV-----GNGPVTSLCFKSGNE------------DI 73 (375)
Q Consensus 18 i~~~~~~~~~~~~l~s~~~d~~i~iw~~~------~~-~~~~~~~~-----~~~~v~~l~~~~~~~------------~l 73 (375)
-+.++++|. +.+-++....+...+||.. .. ..+-.+.. .....+.+.|+.... .+
T Consensus 25 ~WGia~~p~-~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~F 103 (336)
T TIGR03118 25 AWGLSYRPG-GPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRF 103 (336)
T ss_pred cceeEecCC-CCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeE
Confidence 467899998 6777777777899999986 11 12233331 134567777764332 36
Q ss_pred EEEcCCCeEEEEECCCCCcc--ccccccc-CCCcc-eeEEEEcC--CCCeEEEEe-CCCcEEEEeCcCceee--eeEec-
Q 017194 74 IYVSSGKEVKSFDVHMPASW--RPLESYN-YNKEE-INQIVCNP--KSSFLACAD-DGGDVKIIDIRQHCLY--KSLRA- 143 (375)
Q Consensus 74 ~~~~~d~~i~iwd~~~~~~~--~~~~~~~-~~~~~-v~~~~~~~--~~~~l~~~~-~dg~i~iwd~~~~~~~--~~~~~- 143 (375)
+.++.||+|.-|...-+... .....+. ..... -..+++.. .+.+|+.+. .+++|.++|-.=.+.. ..+..
T Consensus 104 if~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F~DP 183 (336)
T TIGR03118 104 LFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSFIDP 183 (336)
T ss_pred EEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCccCC
Confidence 77888999999996432220 1111111 11122 23455543 345555554 6788999985322111 01110
Q ss_pred ---C-----------cccceeEEEEeeCCCcEEEEeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEe
Q 017194 144 ---G-----------HSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIA 209 (375)
Q Consensus 144 ---~-----------~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 209 (375)
. ..-.|+-..-.++.. -=+.+..-|.|-+||+. ++.++++...- .-...+.|+
T Consensus 184 ~iPagyAPFnIqnig~~lyVtYA~qd~~~~-d~v~G~G~G~VdvFd~~-G~l~~r~as~g-----------~LNaPWG~a 250 (336)
T TIGR03118 184 ALPAGYAPFNVQNLGGTLYVTYAQQDADRN-DEVAGAGLGYVNVFTLN-GQLLRRVASSG-----------RLNAPWGLA 250 (336)
T ss_pred CCCCCCCCcceEEECCeEEEEEEecCCccc-ccccCCCcceEEEEcCC-CcEEEEeccCC-----------cccCCceee
Confidence 0 000011111111111 12233345789999976 77888775320 123457788
Q ss_pred ecCCccccCCCCEEEEEecCCcEEEEeCCCccee
Q 017194 210 IPDADMLDKTNKICVVAKGDGVVDVINIESELNI 243 (375)
Q Consensus 210 ~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~ 243 (375)
..|..+-...+.+|+---.||+|..||..+++..
T Consensus 251 ~APa~FG~~sg~lLVGNFGDG~InaFD~~sG~~~ 284 (336)
T TIGR03118 251 IAPESFGSLSGALLVGNFGDGTINAYDPQSGAQL 284 (336)
T ss_pred eChhhhCCCCCCeEEeecCCceeEEecCCCCcee
Confidence 8887776677888988889999999999876544
No 416
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=96.41 E-value=0.16 Score=43.80 Aligned_cols=140 Identities=15% Similarity=0.166 Sum_probs=90.3
Q ss_pred EEEeCCCCcEEEEecccCceeeEeeecCccEEEEEEeCCCC-------eEEEEcCCCeEEEEECCCCC-cccccc--ccc
Q 017194 31 VASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNE-------DIIYVSSGKEVKSFDVHMPA-SWRPLE--SYN 100 (375)
Q Consensus 31 l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~-------~l~~~~~d~~i~iwd~~~~~-~~~~~~--~~~ 100 (375)
+..|+....+.-.|++.|+.+..+..|..- -+.|.|..+ .-+.|-.+..|.-.|.+-.. .+.... .+.
T Consensus 483 ~~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~esKdY~ 560 (776)
T COG5167 483 YLDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVVESKDYK 560 (776)
T ss_pred EecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEEeecccceEEecccccCCceeeeeehhcc
Confidence 445666677888899999999998877655 567777432 23345556666666765322 111111 111
Q ss_pred CCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCceeeeeEecCcccceeEEEEeeCCCcEEEEeecCCeEEEeeCC
Q 017194 101 YNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFS 177 (375)
Q Consensus 101 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~ 177 (375)
. .....+..-.. .-++|+++..|.|++||--..+....+. +....|..+....+|+++|++| ...+.+-|++
T Consensus 561 t-Kn~Fss~~tTe-sGyIa~as~kGDirLyDRig~rAKtalP-~lG~aIk~idvta~Gk~ilaTC--k~yllL~d~~ 632 (776)
T COG5167 561 T-KNKFSSGMTTE-SGYIAAASRKGDIRLYDRIGKRAKTALP-GLGDAIKHIDVTANGKHILATC--KNYLLLTDVP 632 (776)
T ss_pred c-ccccccccccc-CceEEEecCCCceeeehhhcchhhhcCc-ccccceeeeEeecCCcEEEEee--cceEEEEecc
Confidence 1 22233333333 3489999999999999965545555566 7778999999999998555554 4578888875
No 417
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=96.37 E-value=0.38 Score=39.50 Aligned_cols=175 Identities=10% Similarity=0.102 Sum_probs=89.2
Q ss_pred CeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEe-cCCcEEEEeCCCcceeeccc
Q 017194 169 SKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAK-GDGVVDVINIESELNISRSK 247 (375)
Q Consensus 169 ~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~ 247 (375)
-+|.+||+.+++.++++.++... ......+..+.+..... ..+..++..+. ..+.|.++|+.+++......
T Consensus 34 pKLv~~Dl~t~~li~~~~~p~~~-------~~~~s~lndl~VD~~~~-~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~ 105 (287)
T PF03022_consen 34 PKLVAFDLKTNQLIRRYPFPPDI-------APPDSFLNDLVVDVRDG-NCDDGFAYITDSGGPGLIVYDLATGKSWRVLH 105 (287)
T ss_dssp -EEEEEETTTTCEEEEEE--CCC-------S-TCGGEEEEEEECTTT-TS-SEEEEEEETTTCEEEEEETTTTEEEEEET
T ss_pred cEEEEEECCCCcEEEEEECChHH-------cccccccceEEEEccCC-CCcceEEEEeCCCcCcEEEEEccCCcEEEEec
Confidence 37889999999999998876211 11345677787765200 00113444444 44689999999876655443
Q ss_pred ccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEecCCCeEEEEeCCCcee
Q 017194 248 STTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQG 327 (375)
Q Consensus 248 ~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd~~~~~~ 327 (375)
...........+.-.|.. ... ...+..++.+|..+++++|.-....+ -++|.+++...
T Consensus 106 ~~~~~~p~~~~~~i~g~~------------------~~~---~dg~~gial~~~~~d~r~LYf~~lss-~~ly~v~T~~L 163 (287)
T PF03022_consen 106 NSFSPDPDAGPFTIGGES------------------FQW---PDGIFGIALSPISPDGRWLYFHPLSS-RKLYRVPTSVL 163 (287)
T ss_dssp CGCTTS-SSEEEEETTEE------------------EEE---TTSEEEEEE-TTSTTS-EEEEEETT--SEEEEEEHHHH
T ss_pred CCcceeccccceeccCce------------------Eec---CCCccccccCCCCCCccEEEEEeCCC-CcEEEEEHHHh
Confidence 322222111122222211 112 23388888886556777777554432 24444443211
Q ss_pred eeecchhhh--hh--hhcccc-cceeeeeecCCCCCcEEEeeCCCeEEEEec
Q 017194 328 VQTSINNDL--LI--KNINLN-KKVNWLCTTPTESENLVVCDTSKVVKVYSI 374 (375)
Q Consensus 328 ~~~~~~~~~--~~--~~~~~~-~~v~~~~~~~~~~~~l~s~~~dg~v~iw~~ 374 (375)
......... .. ...+.. .....+++.+ +|..+++--..+.|..|+.
T Consensus 164 ~~~~~~~~~~~~~~v~~lG~k~~~s~g~~~D~-~G~ly~~~~~~~aI~~w~~ 214 (287)
T PF03022_consen 164 RDPSLSDAQALASQVQDLGDKGSQSDGMAIDP-NGNLYFTDVEQNAIGCWDP 214 (287)
T ss_dssp CSTT--HHH-HHHT-EEEEE---SECEEEEET-TTEEEEEECCCTEEEEEET
T ss_pred hCccccccccccccceeccccCCCCceEEECC-CCcEEEecCCCCeEEEEeC
Confidence 100000011 11 111222 3556677777 8888888778889999985
No 418
>PHA02790 Kelch-like protein; Provisional
Probab=96.37 E-value=0.69 Score=41.32 Aligned_cols=105 Identities=10% Similarity=-0.012 Sum_probs=51.9
Q ss_pred CCCeEEEEcCC-----CeEEEEECCCCCcccccccccCCCcceeEEEEcCCCCeEEEEeCC--CcEEEEeCcCcee--ee
Q 017194 69 GNEDIIYVSSG-----KEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDG--GDVKIIDIRQHCL--YK 139 (375)
Q Consensus 69 ~~~~l~~~~~d-----~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d--g~i~iwd~~~~~~--~~ 139 (375)
++..++.|+.+ ..+..||..+++ +..+............+ .-++...+.|+.+ ..+..||..+++- +.
T Consensus 271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~-W~~~~~m~~~r~~~~~v--~~~~~iYviGG~~~~~sve~ydp~~n~W~~~~ 347 (480)
T PHA02790 271 GEVVYLIGGWMNNEIHNNAIAVNYISNN-WIPIPPMNSPRLYASGV--PANNKLYVVGGLPNPTSVERWFHGDAAWVNMP 347 (480)
T ss_pred CCEEEEEcCCCCCCcCCeEEEEECCCCE-EEECCCCCchhhcceEE--EECCEEEEECCcCCCCceEEEECCCCeEEECC
Confidence 34555666654 257778887643 33333332111112222 2366677777653 3578888765432 22
Q ss_pred eEecCcccceeEEEEeeCCCcEEEEeecCC---eEEEeeCCCCC
Q 017194 140 SLRAGHSSICSSVQFIPWKPWEVISGGLDS---KLVMWDFSKGR 180 (375)
Q Consensus 140 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~---~i~~wd~~~~~ 180 (375)
.+. ...... +++ .-++. +.+.|+.++ .+..||.++.+
T Consensus 348 ~l~-~~r~~~-~~~-~~~g~-IYviGG~~~~~~~ve~ydp~~~~ 387 (480)
T PHA02790 348 SLL-KPRCNP-AVA-SINNV-IYVIGGHSETDTTTEYLLPNHDQ 387 (480)
T ss_pred CCC-CCCccc-EEE-EECCE-EEEecCcCCCCccEEEEeCCCCE
Confidence 222 111111 122 22444 677777553 46678876554
No 419
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=96.30 E-value=0.44 Score=43.21 Aligned_cols=125 Identities=13% Similarity=0.081 Sum_probs=73.8
Q ss_pred eeEEEEeeCCCcEEEEeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEec
Q 017194 149 CSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKG 228 (375)
Q Consensus 149 v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~ 228 (375)
+.-+.-+.-++ ..++-+...++.|||.+.+.......+. ....|..+.|.. .++++.+++-+.
T Consensus 32 ~~li~gss~~k-~a~V~~~~~~LtIWD~~~~~lE~~~~f~------------~~~~I~dLDWts----t~d~qsiLaVGf 94 (631)
T PF12234_consen 32 PSLISGSSIKK-IAVVDSSRSELTIWDTRSGVLEYEESFS------------EDDPIRDLDWTS----TPDGQSILAVGF 94 (631)
T ss_pred cceEeecccCc-EEEEECCCCEEEEEEcCCcEEEEeeeec------------CCCceeeceeee----cCCCCEEEEEEc
Confidence 33344444444 3344444557999999988755554443 357899999986 557888888888
Q ss_pred CCcEEEEeCCCcceeecccccCCCCCCceeecccccceeeeeeeecCCcceeEeeeeecCCC-ccEEEEEEeecCCCCcE
Q 017194 229 DGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHT-AAASCVAFSMFGERGKY 307 (375)
Q Consensus 229 dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~s~~~~~~~~ 307 (375)
.+.|.+|.-...... ...+. -...+.+ .+..|+ .+|.+..|. ++|.+
T Consensus 95 ~~~v~l~~Q~R~dy~--~~~p~--------------------------w~~i~~i-~i~~~T~h~Igds~Wl---~~G~L 142 (631)
T PF12234_consen 95 PHHVLLYTQLRYDYT--NKGPS--------------------------WAPIRKI-DISSHTPHPIGDSIWL---KDGTL 142 (631)
T ss_pred CcEEEEEEccchhhh--cCCcc--------------------------cceeEEE-EeecCCCCCccceeEe---cCCeE
Confidence 889999865321000 00000 0001111 122333 578999999 88866
Q ss_pred EEEecCCCeEEEEeCCC
Q 017194 308 LISGGNDKLVKVWDCSR 324 (375)
Q Consensus 308 l~s~~~dg~i~iwd~~~ 324 (375)
++.++ +.+.|+|-.-
T Consensus 143 vV~sG--Nqlfv~dk~~ 157 (631)
T PF12234_consen 143 VVGSG--NQLFVFDKWL 157 (631)
T ss_pred EEEeC--CEEEEECCCc
Confidence 66554 5688887543
No 420
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.29 E-value=0.093 Score=49.61 Aligned_cols=116 Identities=12% Similarity=0.048 Sum_probs=77.4
Q ss_pred cceeEEEEcCCCCeEEEE--eCCCcEEEEeCcCcee-----eeeEe---c--CcccceeEEEEeeCCCcEEEEeecCCeE
Q 017194 104 EEINQIVCNPKSSFLACA--DDGGDVKIIDIRQHCL-----YKSLR---A--GHSSICSSVQFIPWKPWEVISGGLDSKL 171 (375)
Q Consensus 104 ~~v~~~~~~~~~~~l~~~--~~dg~i~iwd~~~~~~-----~~~~~---~--~~~~~v~~~~~~~~~~~~l~~~~~d~~i 171 (375)
-++..+...+|+...++. +.+-.|..||+++... ...|. . .......++.|.|.=....+.+..|+.|
T Consensus 101 ~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl 180 (1405)
T KOG3630|consen 101 IPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSL 180 (1405)
T ss_pred ccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccch
Confidence 456677777887664433 3444789999975322 11111 0 1223456788888766567788889999
Q ss_pred EEeeCCCCC-cceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCC
Q 017194 172 VMWDFSKGR-PNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIES 239 (375)
Q Consensus 172 ~~wd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 239 (375)
++..+.... ....+.. ....++++|+| .|+.+++|...|++.-|...-
T Consensus 181 ~V~~~~~~~~~v~s~p~--------------t~~~Tav~WSp------rGKQl~iG~nnGt~vQy~P~l 229 (1405)
T KOG3630|consen 181 RVKSTKQLAQNVTSFPV--------------TNSQTAVLWSP------RGKQLFIGRNNGTEVQYEPSL 229 (1405)
T ss_pred hhhhhhhhhhhhcccCc--------------ccceeeEEecc------ccceeeEecCCCeEEEeeccc
Confidence 988776432 2222232 35789999999 799999999999999887664
No 421
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.24 E-value=0.59 Score=39.91 Aligned_cols=106 Identities=16% Similarity=0.182 Sum_probs=73.3
Q ss_pred CCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCcceeecccccCCCCCCceeecccccceeeeeeeecCCccee
Q 017194 201 NPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRL 280 (375)
Q Consensus 201 ~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~ 280 (375)
..+.|.++.|++ |.+.+|+--.+++|.+++....+.. .
T Consensus 65 d~G~I~SIkFSl------DnkilAVQR~~~~v~f~nf~~d~~~------------------------------------l 102 (657)
T KOG2377|consen 65 DKGEIKSIKFSL------DNKILAVQRTSKTVDFCNFIPDNSQ------------------------------------L 102 (657)
T ss_pred CCCceeEEEecc------CcceEEEEecCceEEEEecCCCchh------------------------------------h
Confidence 457899999999 8999999999999999988532111 1
Q ss_pred EeeeeecCCCccEEEEEEeecCCCCcEEEEecCCCeEEEEeCCCceeeeecchhhhhhhhcccccceeeeeecCCCCCcE
Q 017194 281 HLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENL 360 (375)
Q Consensus 281 ~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l 360 (375)
....+-+.....|....|+ +..-+|-....| +-+|-....+ +.++....|+-.|.+..|.+ +-+.+
T Consensus 103 ~~~~~ck~k~~~IlGF~W~----~s~e~A~i~~~G-~e~y~v~pek--------rslRlVks~~~nvnWy~yc~-et~v~ 168 (657)
T KOG2377|consen 103 EYTQECKTKNANILGFCWT----SSTEIAFITDQG-IEFYQVLPEK--------RSLRLVKSHNLNVNWYMYCP-ETAVI 168 (657)
T ss_pred HHHHHhccCcceeEEEEEe----cCeeEEEEecCC-eEEEEEchhh--------hhhhhhhhcccCccEEEEcc-ccceE
Confidence 1112223335568888897 345666665544 7777766654 55667778889999999998 55544
Q ss_pred EE
Q 017194 361 VV 362 (375)
Q Consensus 361 ~s 362 (375)
+-
T Consensus 169 LL 170 (657)
T KOG2377|consen 169 LL 170 (657)
T ss_pred ee
Confidence 33
No 422
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=96.21 E-value=0.25 Score=43.49 Aligned_cols=150 Identities=13% Similarity=0.147 Sum_probs=87.8
Q ss_pred ccEEEEEEeCCCCeEEEEc---CCCeEEEEECCCCCcccccccccCCCcceeEEEEcCC----CCeEEEEeCCCcEEEEe
Q 017194 59 GPVTSLCFKSGNEDIIYVS---SGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPK----SSFLACADDGGDVKIID 131 (375)
Q Consensus 59 ~~v~~l~~~~~~~~l~~~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~----~~~l~~~~~dg~i~iwd 131 (375)
.++..++|. ||+.++-.. .+|.+++=|. ..+..+ ..|..+.|.|- ...+++......|.+|.
T Consensus 20 HPvhGlaWT-DGkqVvLT~L~l~~gE~kfGds------~viGqF----EhV~GlsW~P~~~~~~paLLAVQHkkhVtVWq 88 (671)
T PF15390_consen 20 HPVHGLAWT-DGKQVVLTDLQLHNGEPKFGDS------KVIGQF----EHVHGLSWAPPCTADTPALLAVQHKKHVTVWQ 88 (671)
T ss_pred ccccceEec-CCCEEEEEeeeeeCCccccCCc------cEeecc----ceeeeeeecCcccCCCCceEEEeccceEEEEE
Confidence 578889996 555544332 1333333221 223332 46889999984 33455555778999999
Q ss_pred Cc-----CceeeeeEecCc--cc--ceeEEEEeeCCCcEEEEeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCC
Q 017194 132 IR-----QHCLYKSLRAGH--SS--ICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNP 202 (375)
Q Consensus 132 ~~-----~~~~~~~~~~~~--~~--~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (375)
+. +.+.+..-.... .- -...+.|+|... +|++-.....-.+++++........... ..
T Consensus 89 L~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~-iL~VLT~~dvSV~~sV~~d~srVkaDi~------------~~ 155 (671)
T PF15390_consen 89 LCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKA-ILTVLTARDVSVLPSVHCDSSRVKADIK------------TS 155 (671)
T ss_pred eccCccccccceeeeeeeccCCcccCCCcccccCCCc-eEEEEecCceeEeeeeeeCCceEEEecc------------CC
Confidence 86 222221111001 11 124678999988 6666555555556776654443333333 46
Q ss_pred CceeEEeecCCccccCCCCEEEEEecC-CcEEEEeCC
Q 017194 203 AFVHAIAIPDADMLDKTNKICVVAKGD-GVVDVINIE 238 (375)
Q Consensus 203 ~~v~~~~~~~~~~~~~~~~~l~~~~~d-g~i~i~d~~ 238 (375)
+.|++.+|.+ ||+.|+++-.. =.-++||-.
T Consensus 156 G~IhCACWT~------DG~RLVVAvGSsLHSyiWd~~ 186 (671)
T PF15390_consen 156 GLIHCACWTK------DGQRLVVAVGSSLHSYIWDSA 186 (671)
T ss_pred ceEEEEEecC------cCCEEEEEeCCeEEEEEecCc
Confidence 8999999999 78888776543 345677754
No 423
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.13 E-value=0.14 Score=48.54 Aligned_cols=141 Identities=17% Similarity=0.104 Sum_probs=85.8
Q ss_pred ccEEEEEEeCCCCeEEEE--cCCCeEEEEECCCCCcc-----ccccc---ccCCCcceeEEEEcCCCC-eEEEEeCCCcE
Q 017194 59 GPVTSLCFKSGNEDIIYV--SSGKEVKSFDVHMPASW-----RPLES---YNYNKEEINQIVCNPKSS-FLACADDGGDV 127 (375)
Q Consensus 59 ~~v~~l~~~~~~~~l~~~--~~d~~i~iwd~~~~~~~-----~~~~~---~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i 127 (375)
-++..+...+|+...++. +.+-.|..||+++-... .++.. .........++.|+|.-. ..++...|+.|
T Consensus 101 ~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl 180 (1405)
T KOG3630|consen 101 IPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSL 180 (1405)
T ss_pred ccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccch
Confidence 456666667776654443 33348899998752211 11111 111123456778888532 35666788999
Q ss_pred EEEeCcCc-eeeeeEecCcccceeEEEEeeCCCcEEEEeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCcee
Q 017194 128 KIIDIRQH-CLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVH 206 (375)
Q Consensus 128 ~iwd~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 206 (375)
++..+... ..+..+. .....++++|+|.|+ .++.|-..|++.-|-.. .+....+. .|+.. ....|.
T Consensus 181 ~V~~~~~~~~~v~s~p--~t~~~Tav~WSprGK-Ql~iG~nnGt~vQy~P~-leik~~ip--~Pp~~-------e~yrvl 247 (1405)
T KOG3630|consen 181 RVKSTKQLAQNVTSFP--VTNSQTAVLWSPRGK-QLFIGRNNGTEVQYEPS-LEIKSEIP--EPPVE-------ENYRVL 247 (1405)
T ss_pred hhhhhhhhhhhhcccC--cccceeeEEeccccc-eeeEecCCCeEEEeecc-cceeeccc--CCCcC-------CCccee
Confidence 88877533 2333443 566789999999999 69999999999988754 33222222 11111 146788
Q ss_pred EEeecC
Q 017194 207 AIAIPD 212 (375)
Q Consensus 207 ~~~~~~ 212 (375)
+|.|..
T Consensus 248 ~v~Wl~ 253 (1405)
T KOG3630|consen 248 SVTWLS 253 (1405)
T ss_pred EEEEec
Confidence 999976
No 424
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=96.08 E-value=0.25 Score=44.75 Aligned_cols=109 Identities=13% Similarity=0.206 Sum_probs=70.2
Q ss_pred EEEecCCCCEEEEeCCCCcEEEEecccCceeeEee-ecCccEEEEEEe--CCCCeEEEEcCCCeEEEEECC------CCC
Q 017194 21 CIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTD-VGNGPVTSLCFK--SGNEDIIYVSSGKEVKSFDVH------MPA 91 (375)
Q Consensus 21 ~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~-~~~~~v~~l~~~--~~~~~l~~~~~d~~i~iwd~~------~~~ 91 (375)
+.-+.. ++..++-+....+.|||...+.....-. ...+.|.++.|. |+++.+++.+..+.|.++.-. .+.
T Consensus 35 i~gss~-~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~~p 113 (631)
T PF12234_consen 35 ISGSSI-KKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNKGP 113 (631)
T ss_pred Eeeccc-CcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcCCc
Confidence 333443 4444444445689999998776433222 347899999995 789999999999999998642 111
Q ss_pred cccccccc--cCC-CcceeEEEEcCCCCeEEEEeCCCcEEEEeC
Q 017194 92 SWRPLESY--NYN-KEEINQIVCNPKSSFLACADDGGDVKIIDI 132 (375)
Q Consensus 92 ~~~~~~~~--~~~-~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~ 132 (375)
.+..++.+ ..+ ..+|.+..|.++|.+++.++ +.+.|+|-
T Consensus 114 ~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sG--Nqlfv~dk 155 (631)
T PF12234_consen 114 SWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSG--NQLFVFDK 155 (631)
T ss_pred ccceeEEEEeecCCCCCccceeEecCCeEEEEeC--CEEEEECC
Confidence 22222222 112 35799999999996655443 56888874
No 425
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=96.05 E-value=0.0011 Score=55.79 Aligned_cols=147 Identities=12% Similarity=0.126 Sum_probs=101.1
Q ss_pred EEEEecCCCCEEEEeCCCCcEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEE-EcCCCeEEEEECCCCCccccccc
Q 017194 20 CCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIY-VSSGKEVKSFDVHMPASWRPLES 98 (375)
Q Consensus 20 ~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~-~~~d~~i~iwd~~~~~~~~~~~~ 98 (375)
...|-|.+++ ++.++.+..+..||-. ++....+. .++....++|..++..++. +-..+.+.+||+.+... +.+..
T Consensus 39 ~~~w~~e~~n-lavaca~tiv~~YD~a-gq~~le~n-~tg~aldm~wDkegdvlavlAek~~piylwd~n~eyt-qqLE~ 114 (615)
T KOG2247|consen 39 IHRWRPEGHN-LAVACANTIVIYYDKA-GQVILELN-PTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYT-QQLES 114 (615)
T ss_pred eeeEecCCCc-eehhhhhhHHHhhhhh-cceecccC-CchhHhhhhhccccchhhhhhhcCCCeeechhhhhhH-HHHhc
Confidence 3578888444 7778888888888844 44333333 2455667888888776544 45568999999985322 22222
Q ss_pred ccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCceeeeeEecCcccceeEEEEeeCCCcEEEEeecCCeEEEee
Q 017194 99 YNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWD 175 (375)
Q Consensus 99 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd 175 (375)
-..|... -+.|++....++.+...|.+.+++-.+.+.+...- .|...+.++++.+.+ +.+.++.|..+.+-.
T Consensus 115 gg~~s~s--ll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~G-kh~RRgtq~av~lEd--~vil~dcd~~L~v~~ 186 (615)
T KOG2247|consen 115 GGTSSKS--LLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMG-KHQRRGTQIAVTLED--YVILCDCDNTLSVTT 186 (615)
T ss_pred cCcchHH--HHhhccCCccccccccccceEEEeccchhhhhhhc-ccccceeEEEecccc--eeeecCcHHHHHHhh
Confidence 1112222 27789988889999899999999987766655554 599999999999987 577777776655443
No 426
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.98 E-value=0.85 Score=44.35 Aligned_cols=153 Identities=8% Similarity=0.044 Sum_probs=94.3
Q ss_pred EEEEecCCCCEEEEeCCCCcEEEEecccCceeeEeeecCccEEEEEEe--------CCCCeEEEEcCCCeEEEEECCCCC
Q 017194 20 CCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFK--------SGNEDIIYVSSGKEVKSFDVHMPA 91 (375)
Q Consensus 20 ~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~--------~~~~~l~~~~~d~~i~iwd~~~~~ 91 (375)
.|-+.|.-++.-+| -|..+.+|+.+++.....+.+-...|..+..- |.=++++..+.--.|.++-+.-.+
T Consensus 83 ~mGiFpeI~RaWiT--iDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~ 160 (1311)
T KOG1900|consen 83 DMGIFPEIGRAWIT--IDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDE 160 (1311)
T ss_pred eeccchhhcceEEE--eCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEecc
Confidence 34444543444444 46789999999988777777766677776542 333455555656677777654322
Q ss_pred ccccccccc------CCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCc----Cc---e-e-------------e---eeE
Q 017194 92 SWRPLESYN------YNKEEINQIVCNPKSSFLACADDGGDVKIIDIR----QH---C-L-------------Y---KSL 141 (375)
Q Consensus 92 ~~~~~~~~~------~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~----~~---~-~-------------~---~~~ 141 (375)
.......+. .....|+++....+|+.+++| .||.| |.+. .+ + + + -.+
T Consensus 161 ~~~~~~~f~~~~~i~~dg~~V~~I~~t~nGRIF~~G-~dg~l--yEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~ 237 (1311)
T KOG1900|consen 161 FTGELSIFNTSFKISVDGVSVNCITYTENGRIFFAG-RDGNL--YELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSV 237 (1311)
T ss_pred ccCcccccccceeeecCCceEEEEEeccCCcEEEee-cCCCE--EEEEEeccCchhhcccccccCchhHHHHhhhhhhcC
Confidence 211111111 114568888888888777766 56644 4332 11 1 0 0 011
Q ss_pred ecCcccceeEEEEeeCCCcEEEEeecCCeEEEeeCCC
Q 017194 142 RAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSK 178 (375)
Q Consensus 142 ~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~ 178 (375)
...+..+|..++...... ++.+-++.|+|.+||+..
T Consensus 238 ~~~~~dpI~qi~ID~SR~-IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 238 PGSSKDPIRQITIDNSRN-ILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred CCCCCCcceeeEeccccc-eeeeeccCceEEEEEccC
Confidence 114567899999887766 899999999999999986
No 427
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.92 E-value=0.66 Score=42.22 Aligned_cols=177 Identities=12% Similarity=0.035 Sum_probs=91.8
Q ss_pred CCCCCeeeecCCCceeEEEEecCCCCEEEEeCCCCcEEEEecccCceeeE--e--eecCccEEEEEEeCCCCeEEEEcCC
Q 017194 4 AEAKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLV--T--DVGNGPVTSLCFKSGNEDIIYVSSG 79 (375)
Q Consensus 4 ~~~~~~~l~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~--~--~~~~~~v~~l~~~~~~~~l~~~~~d 79 (375)
+|..+.++-...+.+..+.|+.+ ..|++-..+|++.+|++- |+.+.. . ......|..+.+..+|-.++ ..+
T Consensus 72 sG~lL~~~~w~~~~lI~mgWs~~--eeLI~v~k~g~v~Vy~~~-ge~ie~~svg~e~~~~~I~ec~~f~~GVavl--t~~ 146 (829)
T KOG2280|consen 72 SGQLLGRILWKHGELIGMGWSDD--EELICVQKDGTVHVYGLL-GEFIESNSVGFESQMSDIVECRFFHNGVAVL--TVS 146 (829)
T ss_pred cccchHHHHhcCCCeeeecccCC--ceEEEEeccceEEEeecc-hhhhcccccccccccCceeEEEEecCceEEE--ecC
Confidence 44555555444457888999976 567778899999999976 333322 1 22234466666665664333 334
Q ss_pred CeEE-EEECCCCCcccccccccCCCcceeEEEEcCCCC---eEEEEeCCCcEEEEeCcCc-eeeeeEecCcccceeEEEE
Q 017194 80 KEVK-SFDVHMPASWRPLESYNYNKEEINQIVCNPKSS---FLACADDGGDVKIIDIRQH-CLYKSLRAGHSSICSSVQF 154 (375)
Q Consensus 80 ~~i~-iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~---~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~v~~~~~ 154 (375)
|.+. +-+.+... .......+...-+-.|-...+++. .++-....--..++..+.. .....+. .....+..+..
T Consensus 147 g~v~~i~~~~~~~-~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~~~~~q~~~~~~q~~~~~-~~~~~~~ki~V 224 (829)
T KOG2280|consen 147 GQVILINGVEEPK-LRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVGLHICQVEESRVQLHALS-WPNSSVVKISV 224 (829)
T ss_pred CcEEEEcCCCcch-hhhCCCCCCccCCCcceeEecCCCcceeEEeechhhhhcccceecccccccccC-CCCceEEEEEE
Confidence 4444 33443221 122222222122222222222221 1111110000112222211 1112222 22356778889
Q ss_pred eeCCCcEEEEeecCCeEEEeeCCCCCcceEEecC
Q 017194 155 IPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFG 188 (375)
Q Consensus 155 ~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~ 188 (375)
+|+.+ +|+--...|.|.+-+....+....+...
T Consensus 225 S~n~~-~laLyt~~G~i~~vs~D~~~~lce~~~~ 257 (829)
T KOG2280|consen 225 SPNRR-FLALYTETGKIWVVSIDLSQILCEFNCT 257 (829)
T ss_pred cCCcc-eEEEEecCCcEEEEecchhhhhhccCCC
Confidence 99988 7888899999999998877777777644
No 428
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=95.86 E-value=0.36 Score=41.78 Aligned_cols=53 Identities=8% Similarity=0.135 Sum_probs=41.6
Q ss_pred CCcEEEEecCCCeEEEEeCCCceeeeecchhhhhhhhcccccceeeeeecCCCCCcEEEeeCC
Q 017194 304 RGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTS 366 (375)
Q Consensus 304 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d 366 (375)
...|+|+++..|.|++||--.. ..-..+.+....|..+..+. +|+++++.+..
T Consensus 572 esGyIa~as~kGDirLyDRig~---------rAKtalP~lG~aIk~idvta-~Gk~ilaTCk~ 624 (776)
T COG5167 572 ESGYIAAASRKGDIRLYDRIGK---------RAKTALPGLGDAIKHIDVTA-NGKHILATCKN 624 (776)
T ss_pred cCceEEEecCCCceeeehhhcc---------hhhhcCcccccceeeeEeec-CCcEEEEeecc
Confidence 3459999999999999997664 44456777888999999988 88887766543
No 429
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=95.86 E-value=0.014 Score=53.33 Aligned_cols=165 Identities=12% Similarity=0.133 Sum_probs=96.7
Q ss_pred eecCCCceeEEEEecCCCCEEEEeCCCCcEEEEecc--cCceeeEeee-----cCccEEEEEEeC---CCCeEEEEcCCC
Q 017194 11 LRGHKATATCCIASRDRPGFVASSGEDGCICWFDLR--SKDVQLVTDV-----GNGPVTSLCFKS---GNEDIIYVSSGK 80 (375)
Q Consensus 11 l~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~--~~~~~~~~~~-----~~~~v~~l~~~~---~~~~l~~~~~d~ 80 (375)
++|..+.|-.++|-..+-..++ -.-|.+.+|++. .|+....+.. ....+.-+.|.| +.-++..+-.++
T Consensus 128 ~kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~ 205 (1283)
T KOG1916|consen 128 AKGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGG 205 (1283)
T ss_pred HhcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCC
Confidence 4677888888888554333333 333678899875 3444333322 234445556654 555666666778
Q ss_pred eEEEEECCCCCcccccccccCCCcceeEE-----------EEcCCCCeEEEEeCCCcEEEEeCc-----CceeeeeEecC
Q 017194 81 EVKSFDVHMPASWRPLESYNYNKEEINQI-----------VCNPKSSFLACADDGGDVKIIDIR-----QHCLYKSLRAG 144 (375)
Q Consensus 81 ~i~iwd~~~~~~~~~~~~~~~~~~~v~~~-----------~~~~~~~~l~~~~~dg~i~iwd~~-----~~~~~~~~~~~ 144 (375)
.+++..+.+... ..+.+|...+..+ ..+|||..++.++.||.++.|.+. ...++..++ .
T Consensus 206 ~i~lL~~~ra~~----~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhewk-p 280 (1283)
T KOG1916|consen 206 EIRLLNINRALR----SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYITGKIVHRCLHEWK-P 280 (1283)
T ss_pred ceeEeeechHHH----HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeeeeeeccccHhhhhccC-C
Confidence 888877764221 2333355444433 368999999999999998888764 234455666 6
Q ss_pred ccc-ceeEEEEeeCCC-------c-EEEEee-cCCeEEEeeCCCCCcc
Q 017194 145 HSS-ICSSVQFIPWKP-------W-EVISGG-LDSKLVMWDFSKGRPN 182 (375)
Q Consensus 145 ~~~-~v~~~~~~~~~~-------~-~l~~~~-~d~~i~~wd~~~~~~~ 182 (375)
|.+ +-.|..++.+.. + ++++++ .+..+++|.....+++
T Consensus 281 hd~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cl 328 (1283)
T KOG1916|consen 281 HDKHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCL 328 (1283)
T ss_pred CCCCCceeeeeccccccCCccceeEEEEecccCCcceeEeeccchhhh
Confidence 663 222322333211 1 334433 3556888987766665
No 430
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=95.66 E-value=0.84 Score=36.28 Aligned_cols=200 Identities=11% Similarity=0.015 Sum_probs=120.9
Q ss_pred eeEEEEecCCCCEEEEeCCCCcEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEEcCCCeEEEEECCCCCcccccc
Q 017194 18 ATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLE 97 (375)
Q Consensus 18 i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~ 97 (375)
-..++-.|| |..-.++...+.|--.|..+|+....--+....-..+..-|||..-++-+.. -|.-.|-++.+..+..-
T Consensus 64 p~dvapapd-G~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~-aI~R~dpkt~evt~f~l 141 (353)
T COG4257 64 PFDVAPAPD-GAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGPDGSAWITDTGL-AIGRLDPKTLEVTRFPL 141 (353)
T ss_pred ccccccCCC-CceEEecCccccceecCCCCCceEEEecCCCCCCceEEECCCCCeeEecCcc-eeEEecCcccceEEeec
Confidence 455677777 7777888877888888888888765555555666777888888765554332 55555655433211111
Q ss_pred cccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCceeeeeEecCcccceeEEEEeeCCCcEEEEeecCCeEEEeeCC
Q 017194 98 SYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFS 177 (375)
Q Consensus 98 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~ 177 (375)
..+..........|.+.|++-+++. .|.---.|.. ...++.+........+.|+..|+|. +.++.-.+..|-..|..
T Consensus 142 p~~~a~~nlet~vfD~~G~lWFt~q-~G~yGrLdPa-~~~i~vfpaPqG~gpyGi~atpdGs-vwyaslagnaiaridp~ 218 (353)
T COG4257 142 PLEHADANLETAVFDPWGNLWFTGQ-IGAYGRLDPA-RNVISVFPAPQGGGPYGICATPDGS-VWYASLAGNAIARIDPF 218 (353)
T ss_pred ccccCCCcccceeeCCCccEEEeec-cccceecCcc-cCceeeeccCCCCCCcceEECCCCc-EEEEeccccceEEcccc
Confidence 1222345678889999998888875 2322222322 2234445433445668899999998 67776677778888877
Q ss_pred CCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCC
Q 017194 178 KGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIES 239 (375)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 239 (375)
++. -..+... +.. ......+-.+| -++.-++-...+.+..||...
T Consensus 219 ~~~-aev~p~P--~~~--------~~gsRriwsdp------ig~~wittwg~g~l~rfdPs~ 263 (353)
T COG4257 219 AGH-AEVVPQP--NAL--------KAGSRRIWSDP------IGRAWITTWGTGSLHRFDPSV 263 (353)
T ss_pred cCC-cceecCC--Ccc--------cccccccccCc------cCcEEEeccCCceeeEeCccc
Confidence 663 2233211 100 01122333333 577777766777888887765
No 431
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=95.62 E-value=0.78 Score=39.38 Aligned_cols=105 Identities=9% Similarity=0.031 Sum_probs=54.9
Q ss_pred ccEEEEEEeCCCCeEEEEc-----------CCC-eEEEEECCCCC-cccccccccCCCcceeEEEEcCCCCeEEEEeCCC
Q 017194 59 GPVTSLCFKSGNEDIIYVS-----------SGK-EVKSFDVHMPA-SWRPLESYNYNKEEINQIVCNPKSSFLACADDGG 125 (375)
Q Consensus 59 ~~v~~l~~~~~~~~l~~~~-----------~d~-~i~iwd~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg 125 (375)
.....|+|.++|+.+++-. ..+ .|.+++-.++. .......+.........+++.+++ |++++...
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G--lyV~~~~~ 91 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG--VYVATPPD 91 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC--EEEeCCCe
Confidence 3456788888888666542 123 67777643321 122222222223346788998888 44444444
Q ss_pred cEEEEeCcCc-----e---eeeeEecC---cccceeEEEEeeCCCcEEEEee
Q 017194 126 DVKIIDIRQH-----C---LYKSLRAG---HSSICSSVQFIPWKPWEVISGG 166 (375)
Q Consensus 126 ~i~iwd~~~~-----~---~~~~~~~~---~~~~v~~~~~~~~~~~~l~~~~ 166 (375)
..++.|.... + .+..+... +......++|.|+|. +.++-+
T Consensus 92 i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~-LYv~~G 142 (367)
T TIGR02604 92 ILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGW-LYFNHG 142 (367)
T ss_pred EEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCC-EEEecc
Confidence 3334454311 1 12223211 234577899999997 555443
No 432
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=95.50 E-value=1.3 Score=37.37 Aligned_cols=103 Identities=11% Similarity=0.135 Sum_probs=54.2
Q ss_pred eeEEEEecCCCCEEEEeCCCCcEEEEecccCce---eeEe----eecCccEEEEEEeCC----CCeEEEEcCC-------
Q 017194 18 ATCCIASRDRPGFVASSGEDGCICWFDLRSKDV---QLVT----DVGNGPVTSLCFKSG----NEDIIYVSSG------- 79 (375)
Q Consensus 18 i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~---~~~~----~~~~~~v~~l~~~~~----~~~l~~~~~d------- 79 (375)
-+.|+|.|+ ++++++ ...|.|++++ ..+.. +..+ .........++++|+ +...++.+..
T Consensus 4 P~~~a~~pd-G~l~v~-e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~ 80 (331)
T PF07995_consen 4 PRSMAFLPD-GRLLVA-ERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDN 80 (331)
T ss_dssp EEEEEEETT-SCEEEE-ETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSE
T ss_pred ceEEEEeCC-CcEEEE-eCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCc
Confidence 467999999 777775 4589999999 33433 2222 123567889999994 3333333311
Q ss_pred -CeEEEEECCCC-Cc---c-ccccccc---CCCcceeEEEEcCCCCeEEEEeC
Q 017194 80 -KEVKSFDVHMP-AS---W-RPLESYN---YNKEEINQIVCNPKSSFLACADD 123 (375)
Q Consensus 80 -~~i~iwd~~~~-~~---~-~~~~~~~---~~~~~v~~~~~~~~~~~l~~~~~ 123 (375)
..|.-|....+ .. . ..+.... .....-..+.|.||+.+.++.+.
T Consensus 81 ~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~ 133 (331)
T PF07995_consen 81 DNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGD 133 (331)
T ss_dssp EEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-
T ss_pred ceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCC
Confidence 24444544332 00 1 1111111 12234566999999966665543
No 433
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=95.44 E-value=1.4 Score=37.24 Aligned_cols=82 Identities=13% Similarity=0.084 Sum_probs=47.7
Q ss_pred eeeeecCCCccEEEEEEee---c-CCCCcEEEEecCCCeEEEEeCCCceeeeecchhhhhhhhcccccceeeeeecCCCC
Q 017194 282 LDYSVGGHTAAASCVAFSM---F-GERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTES 357 (375)
Q Consensus 282 ~~~~~~~~~~~v~~~~~s~---~-~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 357 (375)
....+..| ..+..+.|-+ | .-.|.++++.-..+.|....++...... +....+.....++..+++.| ||
T Consensus 245 P~~~~~~~-~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~-----~~~~~~~~~~~r~~~v~~~p-DG 317 (331)
T PF07995_consen 245 PVFAYPPH-SAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVT-----EEEEFLGGFGGRPRDVAQGP-DG 317 (331)
T ss_dssp -SEEETTT---EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEE-----EEEEECTTSSS-EEEEEEET-TS
T ss_pred cceeecCc-cccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCcc-----ceEEccccCCCCceEEEEcC-CC
Confidence 44455555 4556666641 0 0145677777767788888876442211 11111234555899999999 99
Q ss_pred CcEEEeeCCCeEE
Q 017194 358 ENLVVCDTSKVVK 370 (375)
Q Consensus 358 ~~l~s~~~dg~v~ 370 (375)
.++++.+.+|.|+
T Consensus 318 ~Lyv~~d~~G~iy 330 (331)
T PF07995_consen 318 ALYVSDDSDGKIY 330 (331)
T ss_dssp EEEEEE-TTTTEE
T ss_pred eEEEEECCCCeEe
Confidence 9888888888875
No 434
>PRK10115 protease 2; Provisional
Probab=95.34 E-value=2.5 Score=39.69 Aligned_cols=110 Identities=12% Similarity=0.072 Sum_probs=65.6
Q ss_pred eeEEEEecCCCCEEEEeCC-----CCcEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEEcCC------CeEEEEE
Q 017194 18 ATCCIASRDRPGFVASSGE-----DGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSG------KEVKSFD 86 (375)
Q Consensus 18 i~~~~~~~~~~~~l~s~~~-----d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d------~~i~iwd 86 (375)
+..+.++|+ +++|+.+.. ...|++.|+.+++.+...-... . ..++|.+|++.|+....+ ..|+.++
T Consensus 129 l~~~~~Spd-g~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~-~-~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~ 205 (686)
T PRK10115 129 LGGMAITPD-NTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNV-E-PSFVWANDSWTFYYVRKHPVTLLPYQVWRHT 205 (686)
T ss_pred EeEEEECCC-CCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCc-c-eEEEEeeCCCEEEEEEecCCCCCCCEEEEEE
Confidence 667789998 777775532 2368899998886432221111 1 469999999877776542 3688888
Q ss_pred CCCCCc-ccccccccCCCccee-EEEEcCCCCeEEEEe---CCCcEEEEeC
Q 017194 87 VHMPAS-WRPLESYNYNKEEIN-QIVCNPKSSFLACAD---DGGDVKIIDI 132 (375)
Q Consensus 87 ~~~~~~-~~~~~~~~~~~~~v~-~~~~~~~~~~l~~~~---~dg~i~iwd~ 132 (375)
+.++.. ...+.. ....... ....+.++++++..+ .++.+.+++.
T Consensus 206 lgt~~~~d~lv~~--e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~ 254 (686)
T PRK10115 206 IGTPASQDELVYE--EKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDA 254 (686)
T ss_pred CCCChhHCeEEEe--eCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEEC
Confidence 887632 112221 1122222 334455787766544 3457888885
No 435
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=95.29 E-value=0.13 Score=27.76 Aligned_cols=33 Identities=9% Similarity=0.016 Sum_probs=26.7
Q ss_pred cceeEEEEeeCCC--cEEEEeecCCeEEEeeCCCC
Q 017194 147 SICSSVQFIPWKP--WEVISGGLDSKLVMWDFSKG 179 (375)
Q Consensus 147 ~~v~~~~~~~~~~--~~l~~~~~d~~i~~wd~~~~ 179 (375)
+.++++.|+|... .+|+.+-..|.|.++|++++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~ 35 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN 35 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence 3688999997543 47888888899999999963
No 436
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=95.29 E-value=2.4 Score=39.19 Aligned_cols=117 Identities=16% Similarity=0.155 Sum_probs=73.1
Q ss_pred ceeEEEEcC--CCCeEEEEeCCCcEEEEeCcC-------c----e---------eeeeEecCcccceeEEEEe--eCCCc
Q 017194 105 EINQIVCNP--KSSFLACADDGGDVKIIDIRQ-------H----C---------LYKSLRAGHSSICSSVQFI--PWKPW 160 (375)
Q Consensus 105 ~v~~~~~~~--~~~~l~~~~~dg~i~iwd~~~-------~----~---------~~~~~~~~~~~~v~~~~~~--~~~~~ 160 (375)
.|+.+.... ....|+.+.+||.|.+|.+++ . + +...+. ....+++++++ ...+
T Consensus 102 tIN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~--v~~SaWGLdIh~~~~~r- 178 (717)
T PF08728_consen 102 TINFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR--VGASAWGLDIHDYKKSR- 178 (717)
T ss_pred eeeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEee--cCCceeEEEEEecCcce-
Confidence 355554433 445788999999999997641 0 0 111222 34578999998 6655
Q ss_pred EEEEeecCCeEEEeeCCCC--CcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCC-EEEEEecCCcEEEEeC
Q 017194 161 EVISGGLDSKLVMWDFSKG--RPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNK-ICVVAKGDGVVDVINI 237 (375)
Q Consensus 161 ~l~~~~~d~~i~~wd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-~l~~~~~dg~i~i~d~ 237 (375)
++|+++....|.+|-.... +....-... +...|.+|.|-+... +++|. .+++++-.|.+.+|++
T Consensus 179 lIAVSsNs~~VTVFaf~l~~~r~~~~~s~~------------~~hNIP~VSFl~~~~-d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 179 LIAVSSNSQEVTVFAFALVDERFYHVPSHQ------------HSHNIPNVSFLDDDL-DPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EEEEecCCceEEEEEEeccccccccccccc------------cccCCCeeEeecCCC-CCccceEEEEEeccCcEEEEEE
Confidence 7888887777877765432 111110101 456789999988522 11232 7888899999999888
No 437
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=95.25 E-value=2.8 Score=39.70 Aligned_cols=118 Identities=10% Similarity=0.103 Sum_probs=71.7
Q ss_pred CCeEEEEcCCCeEEEEECCCCCcccccccccCCC-----cceeEEEEc----------------CCCCeEEEEeCCCcEE
Q 017194 70 NEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNK-----EEINQIVCN----------------PKSSFLACADDGGDVK 128 (375)
Q Consensus 70 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~-----~~v~~~~~~----------------~~~~~l~~~~~dg~i~ 128 (375)
+..|+.++.++.|.-.|.++++..-......... .....+.+. ..+..++.++.|+.+.
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li 273 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI 273 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence 4567777778888888888876543322111000 011222221 1234788888999999
Q ss_pred EEeCcCceeeeeEecCccccee-------------EEEEee--CCCcEEEEeec----------CCeEEEeeCCCCCcce
Q 017194 129 IIDIRQHCLYKSLRAGHSSICS-------------SVQFIP--WKPWEVISGGL----------DSKLVMWDFSKGRPNK 183 (375)
Q Consensus 129 iwd~~~~~~~~~~~~~~~~~v~-------------~~~~~~--~~~~~l~~~~~----------d~~i~~wd~~~~~~~~ 183 (375)
-.|.++++.+..+. ..+.|. .+.-.| .+. .+++|+. +|.|+-+|.++|+.+.
T Consensus 274 ALDA~TGk~~W~fg--~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g-~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W 350 (764)
T TIGR03074 274 ALDADTGKLCEDFG--NNGTVDLTAGMGTTPPGYYYPTSPPLVAGT-TVVIGGRVADNYSTDEPSGVIRAFDVNTGALVW 350 (764)
T ss_pred EEECCCCCEEEEec--CCCceeeecccCcCCCcccccccCCEEECC-EEEEEecccccccccCCCcEEEEEECCCCcEee
Confidence 99999999887664 222110 011111 122 4666643 6889999999999999
Q ss_pred EEecCCC
Q 017194 184 IVNFGLP 190 (375)
Q Consensus 184 ~~~~~~~ 190 (375)
.+....|
T Consensus 351 ~~~~g~p 357 (764)
T TIGR03074 351 AWDPGNP 357 (764)
T ss_pred EEecCCC
Confidence 9886533
No 438
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=95.14 E-value=0.23 Score=38.79 Aligned_cols=70 Identities=19% Similarity=0.195 Sum_probs=48.4
Q ss_pred CCCcEEEEecCCCeEEEEeCCCceeeeec-chhhhhhhhc----ccccceeeeeecCCCCCcEEEeeCCCeEEEEec
Q 017194 303 ERGKYLISGGNDKLVKVWDCSRFQGVQTS-INNDLLIKNI----NLNKKVNWLCTTPTESENLVVCDTSKVVKVYSI 374 (375)
Q Consensus 303 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-~~~~~~~~~~----~~~~~v~~~~~~~~~~~~l~s~~~dg~v~iw~~ 374 (375)
.++++|++.+.+|.+++||+.+.+..... .-.+++.... .....|..+.++. +|.-|++-+ +|..+.|+.
T Consensus 20 ~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~-~G~PiV~ls-ng~~y~y~~ 94 (219)
T PF07569_consen 20 CNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTS-NGVPIVTLS-NGDSYSYSP 94 (219)
T ss_pred eCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcC-CCCEEEEEe-CCCEEEecc
Confidence 46789999999999999999998765332 1122221111 4556788888886 887777665 467788874
No 439
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=95.08 E-value=0.49 Score=40.73 Aligned_cols=85 Identities=22% Similarity=0.338 Sum_probs=60.6
Q ss_pred CcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCceeeeeEecCcccc-eeEEEEeeC-----------------CCcEEEE
Q 017194 103 KEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSI-CSSVQFIPW-----------------KPWEVIS 164 (375)
Q Consensus 103 ~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~-v~~~~~~~~-----------------~~~~l~~ 164 (375)
...+.+++.+|.+++.++...-|.|.++|+.++..++.++ +..+. +.-+..... ..++++-
T Consensus 307 ~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWK-GYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvIy 385 (415)
T PF14655_consen 307 KREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWK-GYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVIY 385 (415)
T ss_pred CceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhc-cCccceEEEEEeecccccccccccccCCCCcceEEEEEE
Confidence 4567889999999999998888999999999998888887 55432 111111111 0113445
Q ss_pred eecCCeEEEeeCCCCCcceEEecC
Q 017194 165 GGLDSKLVMWDFSKGRPNKIVNFG 188 (375)
Q Consensus 165 ~~~d~~i~~wd~~~~~~~~~~~~~ 188 (375)
+-.-|.|.+|+++.|..+..+..+
T Consensus 386 aprRg~lEvW~~~~g~Rv~a~~v~ 409 (415)
T PF14655_consen 386 APRRGILEVWSMRQGPRVAAFNVG 409 (415)
T ss_pred eccCCeEEEEecCCCCEEEEEEeC
Confidence 667899999999999888877654
No 440
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=95.03 E-value=0.0029 Score=53.47 Aligned_cols=113 Identities=12% Similarity=0.068 Sum_probs=78.6
Q ss_pred eeEEEEcCCCCeEEEEeCCCcEEEEeCcCceeeeeEecCcccceeEEEEeeCCCcEEEEeecCCeEEEeeCCCCCcceEE
Q 017194 106 INQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIV 185 (375)
Q Consensus 106 v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~ 185 (375)
.....|-+.+.-++.++.+..+..||- .++...... ..+....++|..+++..++.+-..+.+.+||+.+.. ..++
T Consensus 37 pi~~~w~~e~~nlavaca~tiv~~YD~-agq~~le~n--~tg~aldm~wDkegdvlavlAek~~piylwd~n~ey-tqqL 112 (615)
T KOG2247|consen 37 PIIHRWRPEGHNLAVACANTIVIYYDK-AGQVILELN--PTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEY-TQQL 112 (615)
T ss_pred cceeeEecCCCceehhhhhhHHHhhhh-hcceecccC--CchhHhhhhhccccchhhhhhhcCCCeeechhhhhh-HHHH
Confidence 344567787777888888888999994 344444443 456677889998888666777788999999998543 2333
Q ss_pred ecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCc
Q 017194 186 NFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESE 240 (375)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~ 240 (375)
+.+ ....-.-+.|++ ....++.+...|.+.+++..+.
T Consensus 113 E~g------------g~~s~sll~wsK------g~~el~ig~~~gn~viynhgts 149 (615)
T KOG2247|consen 113 ESG------------GTSSKSLLAWSK------GTPELVIGNNAGNIVIYNHGTS 149 (615)
T ss_pred hcc------------CcchHHHHhhcc------CCccccccccccceEEEeccch
Confidence 322 011112256766 5788888889999999998874
No 441
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=94.96 E-value=1.9 Score=36.26 Aligned_cols=65 Identities=9% Similarity=0.093 Sum_probs=31.7
Q ss_pred CCCeEEEEeCC-----CcEEEEeCcCcee---eeeEecCcccce--eEEEEeeCCCcEEEEeec-----CCeEEEeeCCC
Q 017194 114 KSSFLACADDG-----GDVKIIDIRQHCL---YKSLRAGHSSIC--SSVQFIPWKPWEVISGGL-----DSKLVMWDFSK 178 (375)
Q Consensus 114 ~~~~l~~~~~d-----g~i~iwd~~~~~~---~~~~~~~~~~~v--~~~~~~~~~~~~l~~~~~-----d~~i~~wd~~~ 178 (375)
++..++.|+.+ ..+..+|+.+.+- ...+. ....+. .+++. -++. +++.|+. ...+..||+.+
T Consensus 72 ~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~-~lp~~~~~~~~~~-~~~~-iYv~GG~~~~~~~~~v~~yd~~~ 148 (323)
T TIGR03548 72 ENGIYYIGGSNSSERFSSVYRITLDESKEELICETIG-NLPFTFENGSACY-KDGT-LYVGGGNRNGKPSNKSYLFNLET 148 (323)
T ss_pred CCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcC-CCCcCccCceEEE-ECCE-EEEEeCcCCCccCceEEEEcCCC
Confidence 45566666643 3566777765542 11221 111111 12222 2344 6666664 23577888776
Q ss_pred CCc
Q 017194 179 GRP 181 (375)
Q Consensus 179 ~~~ 181 (375)
.+-
T Consensus 149 ~~W 151 (323)
T TIGR03548 149 QEW 151 (323)
T ss_pred CCe
Confidence 543
No 442
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=94.77 E-value=0.7 Score=42.49 Aligned_cols=115 Identities=13% Similarity=0.051 Sum_probs=74.0
Q ss_pred ceeEEEEecC-CCCEEEEeCCCCcEEEEeccc-------C----c---------eeeEeeecCccEEEEEEe--CCCCeE
Q 017194 17 TATCCIASRD-RPGFVASSGEDGCICWFDLRS-------K----D---------VQLVTDVGNGPVTSLCFK--SGNEDI 73 (375)
Q Consensus 17 ~i~~~~~~~~-~~~~l~s~~~d~~i~iw~~~~-------~----~---------~~~~~~~~~~~v~~l~~~--~~~~~l 73 (375)
.|+-|....- +.+.|+.+..||.|.+|.+++ . + +...+. -....+.++++ ...++|
T Consensus 102 tIN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~rlI 180 (717)
T PF08728_consen 102 TINFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKSRLI 180 (717)
T ss_pred eeeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcceEE
Confidence 4555544322 246789999999999997631 1 0 111222 25688999998 777788
Q ss_pred EEEcCCCeEEEEECCCCCcccccccccCCCcceeEEEEcCCC---C---eEEEEeCCCcEEEEeC
Q 017194 74 IYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKS---S---FLACADDGGDVKIIDI 132 (375)
Q Consensus 74 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~---~---~l~~~~~dg~i~iwd~ 132 (375)
|+++....|.||-............-..+...|.+++|.++. . .+++++-.|.+.+|++
T Consensus 181 AVSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 181 AVSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EEecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 888877888887655321111111111245678899998743 2 6888889999999888
No 443
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=94.75 E-value=0.062 Score=49.44 Aligned_cols=74 Identities=14% Similarity=0.166 Sum_probs=57.5
Q ss_pred CccEEEEEEeecCCCCcEEEEecCCCeEEEEeCCCceeeeecchhhhhhhhcccccceeeeee-----------cCCCCC
Q 017194 290 TAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCT-----------TPTESE 358 (375)
Q Consensus 290 ~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-----------~~~~~~ 358 (375)
...+.-+.|.|+-++.-++..+-.++.|++-+++.. ....+.+|+..++.++| +| ||.
T Consensus 180 gs~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra----------~~~l~rsHs~~~~d~a~~~~g~~~l~~lSp-DGt 248 (1283)
T KOG1916|consen 180 GSDPQLVSWCPIAVNKVYICYGLKGGEIRLLNINRA----------LRSLFRSHSQRVTDMAFFAEGVLKLASLSP-DGT 248 (1283)
T ss_pred CCCcceeeecccccccceeeeccCCCceeEeeechH----------HHHHHHhcCCCcccHHHHhhchhhheeeCC-CCc
Confidence 445677788877677788888888999999888874 23455668877766654 55 999
Q ss_pred cEEEeeCCCeEEEEec
Q 017194 359 NLVVCDTSKVVKVYSI 374 (375)
Q Consensus 359 ~l~s~~~dg~v~iw~~ 374 (375)
.++.+..||.+++|.+
T Consensus 249 v~a~a~~dG~v~f~Qi 264 (1283)
T KOG1916|consen 249 VFAWAISDGSVGFYQI 264 (1283)
T ss_pred EEEEeecCCccceeee
Confidence 9999999999999975
No 444
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=94.67 E-value=1 Score=31.60 Aligned_cols=72 Identities=11% Similarity=0.122 Sum_probs=48.2
Q ss_pred EEEeeCCCcEEEEeecCCeEEEeeCCCC--------CcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEE
Q 017194 152 VQFIPWKPWEVISGGLDSKLVMWDFSKG--------RPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKIC 223 (375)
Q Consensus 152 ~~~~~~~~~~l~~~~~d~~i~~wd~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l 223 (375)
-.|....+ .|+.++.-|+|.+++.... ..+..+.+. ..|++|+-.+..- +.+...|
T Consensus 4 GkfDG~~p-cL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNin--------------~~italaaG~l~~-~~~~D~L 67 (136)
T PF14781_consen 4 GKFDGVHP-CLACATTGGKVFIHNPHERGQRTGRQDSDISFLNIN--------------QEITALAAGRLKP-DDGRDCL 67 (136)
T ss_pred EEeCCCce-eEEEEecCCEEEEECCCccccccccccCceeEEECC--------------CceEEEEEEecCC-CCCcCEE
Confidence 35666666 6888889999999987633 344455543 5677776655211 2245677
Q ss_pred EEEecCCcEEEEeCCCc
Q 017194 224 VVAKGDGVVDVINIESE 240 (375)
Q Consensus 224 ~~~~~dg~i~i~d~~~~ 240 (375)
+.|+.. .|..||....
T Consensus 68 liGt~t-~llaYDV~~N 83 (136)
T PF14781_consen 68 LIGTQT-SLLAYDVENN 83 (136)
T ss_pred EEeccc-eEEEEEcccC
Confidence 777765 7999999864
No 445
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=94.47 E-value=1.1 Score=31.35 Aligned_cols=112 Identities=19% Similarity=0.182 Sum_probs=70.9
Q ss_pred EEEcCCCCeEEEEeCCCcEEEEeCcCc--------eeeeeEecCcccceeEEEEeeC----CCcEEEEeecCCeEEEeeC
Q 017194 109 IVCNPKSSFLACADDGGDVKIIDIRQH--------CLYKSLRAGHSSICSSVQFIPW----KPWEVISGGLDSKLVMWDF 176 (375)
Q Consensus 109 ~~~~~~~~~l~~~~~dg~i~iwd~~~~--------~~~~~~~~~~~~~v~~~~~~~~----~~~~l~~~~~d~~i~~wd~ 176 (375)
-.|......|++++.-|.|.|++.... ..++.+. -...|++++-.+- +...|+.|+ ...+..||+
T Consensus 4 GkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LN--in~~italaaG~l~~~~~~D~LliGt-~t~llaYDV 80 (136)
T PF14781_consen 4 GKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLN--INQEITALAAGRLKPDDGRDCLLIGT-QTSLLAYDV 80 (136)
T ss_pred EEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEE--CCCceEEEEEEecCCCCCcCEEEEec-cceEEEEEc
Confidence 356666667888888999999987633 2344554 5567888865542 223566665 457999999
Q ss_pred CCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCc
Q 017194 177 SKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESE 240 (375)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~ 240 (375)
.....+..-+. +..++++.+-.. -+....++++ +.+..|.-||....
T Consensus 81 ~~N~d~Fyke~--------------~DGvn~i~~g~~--~~~~~~l~iv-GGncsi~Gfd~~G~ 127 (136)
T PF14781_consen 81 ENNSDLFYKEV--------------PDGVNAIVIGKL--GDIPSPLVIV-GGNCSIQGFDYEGN 127 (136)
T ss_pred ccCchhhhhhC--------------ccceeEEEEEec--CCCCCcEEEE-CceEEEEEeCCCCc
Confidence 88776655443 366777777432 1112344444 45567777777653
No 446
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=94.41 E-value=0.51 Score=36.89 Aligned_cols=67 Identities=9% Similarity=0.091 Sum_probs=44.9
Q ss_pred EeCCCCeEEEEcCCCeEEEEECCCCCccccc----cccc-------CCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCc
Q 017194 66 FKSGNEDIIYVSSGKEVKSFDVHMPASWRPL----ESYN-------YNKEEINQIVCNPKSSFLACADDGGDVKIIDIR 133 (375)
Q Consensus 66 ~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~----~~~~-------~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~ 133 (375)
+..++++|++.+.+|.+++||+.+.+....- ..+. .....|..+.++.+|.-+++- .+|..+.|+..
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~l-sng~~y~y~~~ 95 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTL-SNGDSYSYSPD 95 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEE-eCCCEEEeccc
Confidence 4456888999999999999999986543221 1111 234567777777777666554 34677788764
No 447
>PRK10115 protease 2; Provisional
Probab=94.21 E-value=5 Score=37.80 Aligned_cols=113 Identities=12% Similarity=-0.013 Sum_probs=66.5
Q ss_pred ccEEEEEEeCCCCeEEEEcCC-----CeEEEEECCCCCcccccccccCCCcceeEEEEcCCCCeEEEEeCC------CcE
Q 017194 59 GPVTSLCFKSGNEDIIYVSSG-----KEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDG------GDV 127 (375)
Q Consensus 59 ~~v~~l~~~~~~~~l~~~~~d-----~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d------g~i 127 (375)
-.+..+.++|++++|+.+... ..|++.|+.++..+. ..+.. .. ..++|.+|++.|+....+ ..|
T Consensus 127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~--~~i~~--~~-~~~~w~~D~~~~~y~~~~~~~~~~~~v 201 (686)
T PRK10115 127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYP--ELLDN--VE-PSFVWANDSWTFYYVRKHPVTLLPYQV 201 (686)
T ss_pred EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCC--ccccC--cc-eEEEEeeCCCEEEEEEecCCCCCCCEE
Confidence 346678899999988876543 278899998764221 11111 11 458999998877665432 367
Q ss_pred EEEeCcCc--eeeeeEecCccccee-EEEEeeCCCcEEEEee--cCCeEEEeeCC
Q 017194 128 KIIDIRQH--CLYKSLRAGHSSICS-SVQFIPWKPWEVISGG--LDSKLVMWDFS 177 (375)
Q Consensus 128 ~iwd~~~~--~~~~~~~~~~~~~v~-~~~~~~~~~~~l~~~~--~d~~i~~wd~~ 177 (375)
+.+++.++ +....+. ....... ....+.+++++++... .++.+.+++..
T Consensus 202 ~~h~lgt~~~~d~lv~~-e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~ 255 (686)
T PRK10115 202 WRHTIGTPASQDELVYE-EKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAE 255 (686)
T ss_pred EEEECCCChhHCeEEEe-eCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECc
Confidence 88888877 3333344 2222233 2233436765444333 34578888853
No 448
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=94.16 E-value=3.2 Score=35.35 Aligned_cols=195 Identities=15% Similarity=0.133 Sum_probs=106.4
Q ss_pred CCCCeEEEEcCCCeEEEEECCCCCcccccccccCCCcceeEEEEc----CCCCe--EEEEe-CC---CcEEEEeCc--Cc
Q 017194 68 SGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCN----PKSSF--LACAD-DG---GDVKIIDIR--QH 135 (375)
Q Consensus 68 ~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~----~~~~~--l~~~~-~d---g~i~iwd~~--~~ 135 (375)
|...+++....++-+.+||+. ++.++.+. .+.++.+..- -.++. |++++ .+ ..|++|.+. ++
T Consensus 66 p~kSlIigTdK~~GL~VYdL~-Gk~lq~~~-----~Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g 139 (381)
T PF02333_consen 66 PAKSLIIGTDKKGGLYVYDLD-GKELQSLP-----VGRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTG 139 (381)
T ss_dssp GGG-EEEEEETTTEEEEEETT-S-EEEEE------SS-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTT
T ss_pred cccceEEEEeCCCCEEEEcCC-CcEEEeec-----CCCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCC
Confidence 345567777778899999998 44444332 2333333321 13333 44444 32 469999775 33
Q ss_pred eeeeeEec------CcccceeEEEEee---CCCcEEEEeecCCeEEEeeCC---CC----CcceEEecCCCCCCCCCCcc
Q 017194 136 CLYKSLRA------GHSSICSSVQFIP---WKPWEVISGGLDSKLVMWDFS---KG----RPNKIVNFGLPENNGNAGQC 199 (375)
Q Consensus 136 ~~~~~~~~------~~~~~v~~~~~~~---~~~~~l~~~~~d~~i~~wd~~---~~----~~~~~~~~~~~~~~~~~~~~ 199 (375)
. +..+.. .....+..+++.. ++..+++....+|.+..|.+. .+ +.++.+...
T Consensus 140 ~-L~~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~~----------- 207 (381)
T PF02333_consen 140 E-LTDVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKVG----------- 207 (381)
T ss_dssp E-EEE-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE-S-----------
T ss_pred c-ceEcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecCC-----------
Confidence 2 232220 1123467777743 355466777888988888774 22 345666644
Q ss_pred cCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCcceeecccccCCCCCCceeecccccceeeeeeeecCCcce
Q 017194 200 YNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKR 279 (375)
Q Consensus 200 ~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~ 279 (375)
..+..+.... ....|+.+-++--|.-|+.+-.. ...
T Consensus 208 ---sQ~EGCVVDD------e~g~LYvgEE~~GIW~y~Aep~~-----------------------------------~~~ 243 (381)
T PF02333_consen 208 ---SQPEGCVVDD------ETGRLYVGEEDVGIWRYDAEPEG-----------------------------------GND 243 (381)
T ss_dssp ---S-EEEEEEET------TTTEEEEEETTTEEEEEESSCCC------------------------------------S-
T ss_pred ---CcceEEEEec------ccCCEEEecCccEEEEEecCCCC-----------------------------------CCc
Confidence 5778888876 57889999998888888776321 001
Q ss_pred eEeeeeec--CCCccEEEEEEeecCCC--CcEEEEecCCCeEEEEeCCCc
Q 017194 280 LHLDYSVG--GHTAAASCVAFSMFGER--GKYLISGGNDKLVKVWDCSRF 325 (375)
Q Consensus 280 ~~~~~~~~--~~~~~v~~~~~s~~~~~--~~~l~s~~~dg~i~iwd~~~~ 325 (375)
...+.... .....|-.|++-.. .+ |-+|+|.-.+++..||+.+..
T Consensus 244 ~~~v~~~~g~~l~aDvEGlaly~~-~~g~gYLivSsQG~~sf~Vy~r~~~ 292 (381)
T PF02333_consen 244 RTLVASADGDGLVADVEGLALYYG-SDGKGYLIVSSQGDNSFAVYDREGP 292 (381)
T ss_dssp -EEEEEBSSSSB-S-EEEEEEEE--CCC-EEEEEEEGGGTEEEEEESSTT
T ss_pred ceeeecccccccccCccceEEEec-CCCCeEEEEEcCCCCeEEEEecCCC
Confidence 12221221 23456777777421 23 334455556889999998764
No 449
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=94.13 E-value=0.26 Score=26.43 Aligned_cols=33 Identities=9% Similarity=0.075 Sum_probs=25.6
Q ss_pred eCCCcEEEEeecCCeEEEeeCCCCCcceEEecC
Q 017194 156 PWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFG 188 (375)
Q Consensus 156 ~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~ 188 (375)
|++++++++...+++|.++|..+++.+..+..+
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg 33 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPVG 33 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEECC
Confidence 466656666667899999999988888887754
No 450
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=93.92 E-value=2.4 Score=33.70 Aligned_cols=145 Identities=10% Similarity=0.070 Sum_probs=77.0
Q ss_pred cEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEEcCC---CeEEEEECCC---CCcccccccccCCCcceeEEEEc
Q 017194 39 CICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSG---KEVKSFDVHM---PASWRPLESYNYNKEEINQIVCN 112 (375)
Q Consensus 39 ~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d---~~i~iwd~~~---~~~~~~~~~~~~~~~~v~~~~~~ 112 (375)
.-.+||+.+++....-...+.-..+-.+.+||+.|.+|+.. ..+++++..+ ...+......-.....-.+....
T Consensus 47 ~s~~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L 126 (243)
T PF07250_consen 47 HSVEYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATTL 126 (243)
T ss_pred EEEEEecCCCcEEeccCCCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccceEC
Confidence 35678888876432211122333344677899999888752 3688888654 11111111101113344456667
Q ss_pred CCCCeEEEEeCCC-cEEEEeCcCc-eeeee---Eec----CcccceeEEEEeeCCCcEEEEeecCCeEEEeeCCCCCcce
Q 017194 113 PKSSFLACADDGG-DVKIIDIRQH-CLYKS---LRA----GHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNK 183 (375)
Q Consensus 113 ~~~~~l~~~~~dg-~i~iwd~~~~-~~~~~---~~~----~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~ 183 (375)
|||+.|+.|+... +..+|.-... ..... +.. ....----+...|+|+ +|+.+..+. .+||..+.+.++
T Consensus 127 ~DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~-lFi~an~~s--~i~d~~~n~v~~ 203 (243)
T PF07250_consen 127 PDGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGN-LFIFANRGS--IIYDYKTNTVVR 203 (243)
T ss_pred CCCCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCC-EEEEEcCCc--EEEeCCCCeEEe
Confidence 8999999888764 3444443211 11111 110 0111122456679998 677776544 466887776555
Q ss_pred EEe
Q 017194 184 IVN 186 (375)
Q Consensus 184 ~~~ 186 (375)
.+.
T Consensus 204 ~lP 206 (243)
T PF07250_consen 204 TLP 206 (243)
T ss_pred eCC
Confidence 543
No 451
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=93.88 E-value=3.9 Score=35.39 Aligned_cols=155 Identities=14% Similarity=0.048 Sum_probs=0.0
Q ss_pred CCceeEEEEecCCCCEEEEeCCCCcEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEEcCCCeEEEEECCCCCccc
Q 017194 15 KATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWR 94 (375)
Q Consensus 15 ~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~ 94 (375)
.+....+..+++ +.+++.+..-..++-||-....-...-......+.++.|.+++..++++...+.+.--|-.......
T Consensus 238 ~Gsf~~v~~~~d-G~~~~vg~~G~~~~s~d~G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g~~G~l~~S~d~G~~~~~~ 316 (398)
T PLN00033 238 TGTFSTVNRSPD-GDYVAVSSRGNFYLTWEPGQPYWQPHNRASARRIQNMGWRADGGLWLLTRGGGLYVSKGTGLTEEDF 316 (398)
T ss_pred ccceeeEEEcCC-CCEEEEECCccEEEecCCCCcceEEecCCCccceeeeeEcCCCCEEEEeCCceEEEecCCCCccccc
Q ss_pred ccccccCCCcc--eeEEEEcCCCCeEEEEeCCCcEEEEeCcCceeeeeE--ecCcccceeEEEEeeCCCcEEEEeecCCe
Q 017194 95 PLESYNYNKEE--INQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSL--RAGHSSICSSVQFIPWKPWEVISGGLDSK 170 (375)
Q Consensus 95 ~~~~~~~~~~~--v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~l~~~~~d~~ 170 (375)
.+......... +..+.|.+++..+++| ..|.+....-....-...- . .-....+.+.|.++++ ....+.+|.
T Consensus 317 ~f~~~~~~~~~~~l~~v~~~~d~~~~a~G-~~G~v~~s~D~G~tW~~~~~~~-~~~~~ly~v~f~~~~~--g~~~G~~G~ 392 (398)
T PLN00033 317 DFEEADIKSRGFGILDVGYRSKKEAWAAG-GSGILLRSTDGGKSWKRDKGAD-NIAANLYSVKFFDDKK--GFVLGNDGV 392 (398)
T ss_pred ceeecccCCCCcceEEEEEcCCCcEEEEE-CCCcEEEeCCCCcceeEccccC-CCCcceeEEEEcCCCc--eEEEeCCcE
Q ss_pred EEEe
Q 017194 171 LVMW 174 (375)
Q Consensus 171 i~~w 174 (375)
|.-|
T Consensus 393 il~~ 396 (398)
T PLN00033 393 LLRY 396 (398)
T ss_pred EEEe
No 452
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=93.87 E-value=6.5 Score=37.83 Aligned_cols=176 Identities=14% Similarity=0.144 Sum_probs=100.4
Q ss_pred cEEEEecccCceeeEeeec----CccEEEEEEeCCCCe--EEEEcC-----------CCeEEEEECC-CCCccccccccc
Q 017194 39 CICWFDLRSKDVQLVTDVG----NGPVTSLCFKSGNED--IIYVSS-----------GKEVKSFDVH-MPASWRPLESYN 100 (375)
Q Consensus 39 ~i~iw~~~~~~~~~~~~~~----~~~v~~l~~~~~~~~--l~~~~~-----------d~~i~iwd~~-~~~~~~~~~~~~ 100 (375)
.|++.|..+++.+..+... .-.+.++.|+..... ++++.. +|.++.|++- .++.++.+....
T Consensus 854 ~I~~~d~~s~~~~~~~~l~~ne~a~~v~~~~fs~~~~~~~~~v~~~~~~~l~~~~~~~g~~ytyk~~~~g~~lellh~T~ 933 (1205)
T KOG1898|consen 854 SIRVFDPKSGKIICLVELGQNEAAFSVCAVDFSSSEYQPFVAVGVATTEQLDSKSISSGFVYTYKFVRNGDKLELLHKTE 933 (1205)
T ss_pred eEEEEcCCCCceEEEEeecCCcchhheeeeeeccCCCceEEEEEeeccccccccccCCCceEEEEEEecCceeeeeeccC
Confidence 4788888777765555432 234666677654333 333321 3456666653 233333333221
Q ss_pred CCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCceeeeeEecCc-ccceeEEEEeeCCCcEEEEeecCCeEEEeeCCC-
Q 017194 101 YNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGH-SSICSSVQFIPWKPWEVISGGLDSKLVMWDFSK- 178 (375)
Q Consensus 101 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~- 178 (375)
-.+++ .+..|-..++++| ....+++||+...++++.....+ ...|..+++.-. .+++|...-.+.++..+.
T Consensus 934 -~~~~v--~Ai~~f~~~~Lag-vG~~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt~~~---RI~VgD~qeSV~~~~y~~~ 1006 (1205)
T KOG1898|consen 934 -IPGPV--GAICPFQGRVLAG-VGRFLRLYDLGKKKLLRKCELKFIPNRISSIQTYGA---RIVVGDIQESVHFVRYRRE 1006 (1205)
T ss_pred -CCccc--eEEeccCCEEEEe-cccEEEEeeCChHHHHhhhhhccCceEEEEEeecce---EEEEeeccceEEEEEEecC
Confidence 12333 3455655566666 44689999998877766544222 456777776543 577777655565544433
Q ss_pred CCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCC
Q 017194 179 GRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIES 239 (375)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 239 (375)
.+.+..+.... -+..++.+.+- |...++.+..-|.+.+..+..
T Consensus 1007 ~n~l~~fadD~-----------~pR~Vt~~~~l-------D~~tvagaDrfGNi~~vR~P~ 1049 (1205)
T KOG1898|consen 1007 DNQLIVFADDP-----------VPRHVTALELL-------DYDTVAGADRFGNIAVVRIPP 1049 (1205)
T ss_pred CCeEEEEeCCC-----------ccceeeEEEEe-------cCCceeeccccCcEEEEECCC
Confidence 22333332110 24567777666 578889998888888877764
No 453
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=93.67 E-value=0.54 Score=40.10 Aligned_cols=162 Identities=9% Similarity=0.028 Sum_probs=92.1
Q ss_pred eeecCccEEEEEEeCCCCeEEEEcCCCeEEEEECCCCCcccccccccCCCc----cee-EEEEcCCCCeEEEEeCCCcEE
Q 017194 54 TDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKE----EIN-QIVCNPKSSFLACADDGGDVK 128 (375)
Q Consensus 54 ~~~~~~~v~~l~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~----~v~-~~~~~~~~~~l~~~~~dg~i~ 128 (375)
+......|..+-..|||+.+..-+. .++.++++.+.. .+.-+......+ .|+ .+.....+..+++++.||.|.
T Consensus 216 L~~~~~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~-l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~dG~vs 293 (733)
T COG4590 216 LSVPFSDVSQLLLTPDGKTLYVRTG-SELVVALLDKRS-LQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHEDGLVS 293 (733)
T ss_pred cCCCccchHhhEECCCCCEEEEecC-CeEEEEeecccc-cchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcCCCcee
Confidence 3344567788889999998877664 788899887532 111111111111 222 222233566788889999988
Q ss_pred EE-eCcCc-e----eeeeEecCcccceeEEEEeeCCCcEEEEeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCC
Q 017194 129 II-DIRQH-C----LYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNP 202 (375)
Q Consensus 129 iw-d~~~~-~----~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (375)
-| |++.+ . .++.++ -...++..+.-..+.+ -+++-+..|++..+.....+.+-.-.. -
T Consensus 294 QWFdvr~~~~p~l~h~R~f~-l~pa~~~~l~pe~~rk-gF~~l~~~G~L~~f~st~~~~lL~~~~--------------~ 357 (733)
T COG4590 294 QWFDVRRDGQPHLNHIRNFK-LAPAEVQFLLPETNRK-GFYSLYRNGTLQSFYSTSEKLLLFERA--------------Y 357 (733)
T ss_pred eeeeeecCCCCcceeeeccc-cCcccceeeccccccc-eEEEEcCCCceeeeecccCcceehhhh--------------h
Confidence 77 44432 1 122222 1123333332222223 577778888888877554443322221 1
Q ss_pred CceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCc
Q 017194 203 AFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESE 240 (375)
Q Consensus 203 ~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~ 240 (375)
..+.-++++| ++.++++- ..|.|+++.+++.
T Consensus 358 ~~~~~~~~Sp------~~~~Ll~e-~~gki~~~~l~Nr 388 (733)
T COG4590 358 QAPQLVAMSP------NQAYLLSE-DQGKIRLAQLENR 388 (733)
T ss_pred cCcceeeeCc------ccchheee-cCCceEEEEecCC
Confidence 3556788888 67777764 3468999988764
No 454
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=93.45 E-value=7 Score=36.85 Aligned_cols=29 Identities=34% Similarity=0.521 Sum_probs=21.9
Q ss_pred CcceeEEEEcCCCCeEEEEeCCCcEEEEeC
Q 017194 103 KEEINQIVCNPKSSFLACADDGGDVKIIDI 132 (375)
Q Consensus 103 ~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~ 132 (375)
.-.|..+.++|+|++++..+..| |.|..+
T Consensus 84 ~f~v~~i~~n~~g~~lal~G~~~-v~V~~L 112 (717)
T PF10168_consen 84 LFEVHQISLNPTGSLLALVGPRG-VVVLEL 112 (717)
T ss_pred ceeEEEEEECCCCCEEEEEcCCc-EEEEEe
Confidence 34688999999999999887755 555444
No 455
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=93.19 E-value=3 Score=31.86 Aligned_cols=186 Identities=11% Similarity=0.069 Sum_probs=99.4
Q ss_pred CCCEEEEeCCC--CcEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEE-EcCCCeEEEEECCCCCcccccccccCCC
Q 017194 27 RPGFVASSGED--GCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIY-VSSGKEVKSFDVHMPASWRPLESYNYNK 103 (375)
Q Consensus 27 ~~~~l~s~~~d--~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~-~~~d~~i~iwd~~~~~~~~~~~~~~~~~ 103 (375)
++.++.+.+.- ..|++||+.+++.+..-......+..=-...-+.++.. .=.+|.-..+|.++- +.+..+.. +
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~---~~lg~~~y-~ 130 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTL---EELGRFSY-E 130 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHh---hhhccccc-C
Confidence 35666666543 46999999998876554432112211111111232222 233677788887753 33333322 2
Q ss_pred cceeEEEEcCCCCeEEEEeCCCcEEEEeCcCceeeeeEec---C-cccceeEEEEeeCCCcEEEEeecCCeEEEeeCCCC
Q 017194 104 EEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRA---G-HSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKG 179 (375)
Q Consensus 104 ~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~---~-~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~ 179 (375)
+.=+.++ .|+..|..++...+++.-|.++.....++.. + .-..++.+.|- +|. +++-.-.+..|...|..+|
T Consensus 131 GeGWgLt--~d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V-dG~-lyANVw~t~~I~rI~p~sG 206 (262)
T COG3823 131 GEGWGLT--SDDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV-DGE-LYANVWQTTRIARIDPDSG 206 (262)
T ss_pred Ccceeee--cCCcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeee-ccE-EEEeeeeecceEEEcCCCC
Confidence 3334443 3555677776667788888776544433321 1 11233445554 343 5666666667777888888
Q ss_pred CcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEE
Q 017194 180 RPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVA 226 (375)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~ 226 (375)
+.+..+....-. ........+....+.+++.|. .++++++|
T Consensus 207 rV~~widlS~L~-~~~~~~~~~~nvlNGIA~~~~-----~~r~~iTG 247 (262)
T COG3823 207 RVVAWIDLSGLL-KELNLDKSNDNVLNGIAHDPQ-----QDRFLITG 247 (262)
T ss_pred cEEEEEEccCCc-hhcCccccccccccceeecCc-----CCeEEEec
Confidence 887777644100 000111113456788999884 34666665
No 456
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=93.17 E-value=4.8 Score=34.24 Aligned_cols=11 Identities=9% Similarity=0.202 Sum_probs=8.3
Q ss_pred CCCcEEEeeCC
Q 017194 356 ESENLVVCDTS 366 (375)
Q Consensus 356 ~~~~l~s~~~d 366 (375)
++++++.|+.+
T Consensus 321 ~~~iyv~GG~~ 331 (346)
T TIGR03547 321 NNGVLLIGGEN 331 (346)
T ss_pred CCEEEEEeccC
Confidence 77788888765
No 457
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=92.68 E-value=6.1 Score=36.51 Aligned_cols=70 Identities=13% Similarity=0.232 Sum_probs=48.2
Q ss_pred CCceeEEEEecCCCCEEEEeCCCCcEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEEcCCCeEEEEECC
Q 017194 15 KATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVH 88 (375)
Q Consensus 15 ~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i~iwd~~ 88 (375)
...++++.-+|. ++-++.+..||+|++|+......-+... ...+-..+.|...| |+++..|..+.-|.-.
T Consensus 14 ~e~~~aiqshp~-~~s~v~~~~d~si~lfn~~~r~qski~~-~~~p~~nlv~tnhg--l~~~tsdrr~la~~~d 83 (1636)
T KOG3616|consen 14 DEFTTAIQSHPG-GQSFVLAHQDGSIILFNFIPRRQSKICE-EAKPKENLVFTNHG--LVTATSDRRALAWKED 83 (1636)
T ss_pred cceeeeeeecCC-CceEEEEecCCcEEEEeecccchhhhhh-hcCCccceeeeccc--eEEEeccchhheeecc
Confidence 455777888887 8999999999999999987655422222 23344556676544 6677777777777643
No 458
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.59 E-value=4.6 Score=39.67 Aligned_cols=31 Identities=19% Similarity=0.318 Sum_probs=26.1
Q ss_pred cceeEEEEcCCCCeEEEEeCCCcEEEEeCcC
Q 017194 104 EEINQIVCNPKSSFLACADDGGDVKIIDIRQ 134 (375)
Q Consensus 104 ~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 134 (375)
.....++|+|..+.++.+...|.|+++-...
T Consensus 36 ~~~~~~afD~~q~llai~t~tg~i~~yg~~~ 66 (993)
T KOG1983|consen 36 STPSALAFDPTQGLLAIGTRTGAIKIYGQPG 66 (993)
T ss_pred CCCcceeeccccceEEEEEecccEEEecccc
Confidence 3556789999999999999999999987543
No 459
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=92.37 E-value=5.6 Score=32.92 Aligned_cols=279 Identities=10% Similarity=0.016 Sum_probs=122.8
Q ss_pred CCceeEEEEecCCCCEEEEeCCCCcEEEEeccc-CceeeE--eeec---CccEEEEEEeCCCCeEEEEcCCCeEEEEECC
Q 017194 15 KATATCCIASRDRPGFVASSGEDGCICWFDLRS-KDVQLV--TDVG---NGPVTSLCFKSGNEDIIYVSSGKEVKSFDVH 88 (375)
Q Consensus 15 ~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~-~~~~~~--~~~~---~~~v~~l~~~~~~~~l~~~~~d~~i~iwd~~ 88 (375)
..++..|.|..+ ..-+++|. .+.| +.... |+.=.. .... .-...++.|..+ ..+++| ..+ +.+...+
T Consensus 16 ~~~l~dV~F~d~-~~G~~VG~-~g~i--l~T~DGG~tW~~~~~~~~~~~~~~l~~I~f~~~-~g~ivG-~~g-~ll~T~D 88 (302)
T PF14870_consen 16 DKPLLDVAFVDP-NHGWAVGA-YGTI--LKTTDGGKTWQPVSLDLDNPFDYHLNSISFDGN-EGWIVG-EPG-LLLHTTD 88 (302)
T ss_dssp SS-EEEEEESSS-S-EEEEET-TTEE--EEESSTTSS-EE-----S-----EEEEEEEETT-EEEEEE-ETT-EEEEESS
T ss_pred CCceEEEEEecC-CEEEEEec-CCEE--EEECCCCccccccccCCCccceeeEEEEEecCC-ceEEEc-CCc-eEEEecC
Confidence 457899999844 45566555 4533 33333 322111 1111 224667777643 344444 344 4455555
Q ss_pred CCCcccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCceeeeeEecCcccceeEEEEeeCCCcEEEEeecC
Q 017194 89 MPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLD 168 (375)
Q Consensus 89 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d 168 (375)
.++.+..+..-..-++....+....++..+++ +..|.|+.= .+.++.=+.+...-...+..+.-+++|. +++++..-
T Consensus 89 gG~tW~~v~l~~~lpgs~~~i~~l~~~~~~l~-~~~G~iy~T-~DgG~tW~~~~~~~~gs~~~~~r~~dG~-~vavs~~G 165 (302)
T PF14870_consen 89 GGKTWERVPLSSKLPGSPFGITALGDGSAELA-GDRGAIYRT-TDGGKTWQAVVSETSGSINDITRSSDGR-YVAVSSRG 165 (302)
T ss_dssp TTSS-EE----TT-SS-EEEEEEEETTEEEEE-ETT--EEEE-SSTTSSEEEEE-S----EEEEEE-TTS--EEEEETTS
T ss_pred CCCCcEEeecCCCCCCCeeEEEEcCCCcEEEE-cCCCcEEEe-CCCCCCeeEcccCCcceeEeEEECCCCc-EEEEECcc
Confidence 56666665421111223333443344433343 445554432 2233332222214456788888899997 56666554
Q ss_pred CeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCcceeecccc
Q 017194 169 SKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKS 248 (375)
Q Consensus 169 ~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~ 248 (375)
....-||.-.. .-...... ....|.+|.|.| ++.+.+++ ..|.|++=+.....
T Consensus 166 ~~~~s~~~G~~-~w~~~~r~------------~~~riq~~gf~~------~~~lw~~~-~Gg~~~~s~~~~~~------- 218 (302)
T PF14870_consen 166 NFYSSWDPGQT-TWQPHNRN------------SSRRIQSMGFSP------DGNLWMLA-RGGQIQFSDDPDDG------- 218 (302)
T ss_dssp SEEEEE-TT-S-S-EEEE--------------SSS-EEEEEE-T------TS-EEEEE-TTTEEEEEE-TTEE-------
T ss_pred cEEEEecCCCc-cceEEccC------------ccceehhceecC------CCCEEEEe-CCcEEEEccCCCCc-------
Confidence 45557774322 12222212 357899999998 66665654 77888877622210
Q ss_pred cCCCCCCceeecccccceeeeeeeecCCcceeE-eeeeecCCCccEEEEEEeecCCCCcEEEEecCCCeEEEEeCCCcee
Q 017194 249 TTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLH-LDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQG 327 (375)
Q Consensus 249 ~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd~~~~~~ 327 (375)
.... ...........+..++|. +++...|+|+. |.+ +.....++.
T Consensus 219 -----------------------------~~w~~~~~~~~~~~~~~ld~a~~---~~~~~wa~gg~-G~l-~~S~DgGkt 264 (302)
T PF14870_consen 219 -----------------------------ETWSEPIIPIKTNGYGILDLAYR---PPNEIWAVGGS-GTL-LVSTDGGKT 264 (302)
T ss_dssp -----------------------------EEE---B-TTSS--S-EEEEEES---SSS-EEEEEST-T-E-EEESSTTSS
T ss_pred -----------------------------cccccccCCcccCceeeEEEEec---CCCCEEEEeCC-ccE-EEeCCCCcc
Confidence 0011 011122223458899998 77777777765 433 334444421
Q ss_pred eeecchhhhhhhhcccccceeeeeecCCCCCcEEEeeCCCeEEEE
Q 017194 328 VQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVY 372 (375)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~iw 372 (375)
- +.......-......+.|.+ + +.-...+.+|.|.-|
T Consensus 265 W------~~~~~~~~~~~n~~~i~f~~-~-~~gf~lG~~G~ll~~ 301 (302)
T PF14870_consen 265 W------QKDRVGENVPSNLYRIVFVN-P-DKGFVLGQDGVLLRY 301 (302)
T ss_dssp -------EE-GGGTTSSS---EEEEEE-T-TEEEEE-STTEEEEE
T ss_pred c------eECccccCCCCceEEEEEcC-C-CceEEECCCcEEEEe
Confidence 1 11111223345677888876 3 345555678887665
No 460
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=92.17 E-value=7.4 Score=33.89 Aligned_cols=148 Identities=14% Similarity=0.094 Sum_probs=85.3
Q ss_pred CCCeEEEEcCCCeEEEEECCCCCcc--cccccccCCCcceeEEEEcC-----CCCeEEEEeCCCcEEEEeCcC--ce---
Q 017194 69 GNEDIIYVSSGKEVKSFDVHMPASW--RPLESYNYNKEEINQIVCNP-----KSSFLACADDGGDVKIIDIRQ--HC--- 136 (375)
Q Consensus 69 ~~~~l~~~~~d~~i~iwd~~~~~~~--~~~~~~~~~~~~v~~~~~~~-----~~~~l~~~~~dg~i~iwd~~~--~~--- 136 (375)
+...|++|+..|.++||+....... ..+-..+ -..+|..+..-. +...||+ -.-..+.+|.+.. +.
T Consensus 36 ~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~-l~~PILqv~~G~F~s~~~~~~LaV-LhP~kl~vY~v~~~~g~~~~ 113 (418)
T PF14727_consen 36 GSDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQ-LKDPILQVECGKFVSGSEDLQLAV-LHPRKLSVYSVSLVDGTVEH 113 (418)
T ss_pred CccEEEEeccccEEEEEccCCCCCCCccEEEEEe-cCCcEEEEEeccccCCCCcceEEE-ecCCEEEEEEEEecCCCccc
Confidence 3468999999999999998643211 1111111 146777776542 2234555 4557788888731 11
Q ss_pred ----eeeeEecCcc--cceeEEEEeeCC----CcEEEEeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCcee
Q 017194 137 ----LYKSLRAGHS--SICSSVQFIPWK----PWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVH 206 (375)
Q Consensus 137 ----~~~~~~~~~~--~~v~~~~~~~~~----~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 206 (375)
.+..+. .|. .....++.-|-| ..++.+-+.||.+.+|+-+.-.. ...++ ....|+
T Consensus 114 g~~~~L~~~y-eh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f--~~~lp---------~~llPg--- 178 (418)
T PF14727_consen 114 GNQYQLELIY-EHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAF--SRFLP---------DFLLPG--- 178 (418)
T ss_pred CcEEEEEEEE-EEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEE--EEEcC---------CCCCCc---
Confidence 122222 232 233445554433 24788899999999999664322 22222 011223
Q ss_pred EEeecCCccccCCCCEEEEEecCCcEEEEeCCC
Q 017194 207 AIAIPDADMLDKTNKICVVAKGDGVVDVINIES 239 (375)
Q Consensus 207 ~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 239 (375)
.+.+.+ ....+++++.+..+.-|....
T Consensus 179 Pl~Y~~------~tDsfvt~sss~~l~~Yky~~ 205 (418)
T PF14727_consen 179 PLCYCP------RTDSFVTASSSWTLECYKYQD 205 (418)
T ss_pred CeEEee------cCCEEEEecCceeEEEecHHH
Confidence 355666 577888888888888887653
No 461
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=92.13 E-value=8.5 Score=34.49 Aligned_cols=144 Identities=14% Similarity=0.103 Sum_probs=68.4
Q ss_pred CCcEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEEcCCCeEEEEECCCCCcccccccccCCC-cceeEEEEcCCC
Q 017194 37 DGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNK-EEINQIVCNPKS 115 (375)
Q Consensus 37 d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~ 115 (375)
.+...+.|.+ |..+..+.........+...++|.+++... +.++.+|+. |+.... ..+.... .-=..+...|+|
T Consensus 127 ~~~~~~iD~~-G~Vrw~~~~~~~~~~~~~~l~nG~ll~~~~--~~~~e~D~~-G~v~~~-~~l~~~~~~~HHD~~~l~nG 201 (477)
T PF05935_consen 127 SSYTYLIDNN-GDVRWYLPLDSGSDNSFKQLPNGNLLIGSG--NRLYEIDLL-GKVIWE-YDLPGGYYDFHHDIDELPNG 201 (477)
T ss_dssp EEEEEEEETT-S-EEEEE-GGGT--SSEEE-TTS-EEEEEB--TEEEEE-TT---EEEE-EE--TTEE-B-S-EEE-TTS
T ss_pred CceEEEECCC-ccEEEEEccCccccceeeEcCCCCEEEecC--CceEEEcCC-CCEEEe-eecCCcccccccccEECCCC
Confidence 3455566633 554444433222221266678888776554 778888876 332222 1111100 011346677889
Q ss_pred CeEEEEeC-------------CCcEEEEeCcCceeeeeEec-Cc----c---------------------cceeEEEEee
Q 017194 116 SFLACADD-------------GGDVKIIDIRQHCLYKSLRA-GH----S---------------------SICSSVQFIP 156 (375)
Q Consensus 116 ~~l~~~~~-------------dg~i~iwd~~~~~~~~~~~~-~~----~---------------------~~v~~~~~~~ 156 (375)
++|+.+.. .-.|..+| .+|+.+..+.. .| . --++++.+.+
T Consensus 202 n~L~l~~~~~~~~~~~~~~~~~D~Ivevd-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~yd~ 280 (477)
T PF05935_consen 202 NLLILASETKYVDEDKDVDTVEDVIVEVD-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSIDYDP 280 (477)
T ss_dssp -EEEEEEETTEE-TS-EE---S-EEEEE--TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEEEET
T ss_pred CEEEEEeecccccCCCCccEecCEEEEEC-CCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccccCccEEeC
Confidence 88887761 11245555 55655544321 00 0 1368999999
Q ss_pred CCCcEEEEeecCCeEEEeeCCCCCcceEEe
Q 017194 157 WKPWEVISGGLDSKLVMWDFSKGRPNKIVN 186 (375)
Q Consensus 157 ~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~ 186 (375)
.+..+++++-.-..|...|.++++....+-
T Consensus 281 ~dd~iivSsR~~s~V~~Id~~t~~i~Wilg 310 (477)
T PF05935_consen 281 SDDSIIVSSRHQSAVIKIDYRTGKIKWILG 310 (477)
T ss_dssp TTTEEEEEETTT-EEEEEE-TTS-EEEEES
T ss_pred CCCeEEEEcCcceEEEEEECCCCcEEEEeC
Confidence 555456666556689999988887766654
No 462
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=92.05 E-value=5.8 Score=32.42 Aligned_cols=119 Identities=7% Similarity=-0.057 Sum_probs=69.3
Q ss_pred cEEEEEEeCCCCeEEEEcCCCeEEEEECCCC----CcccccccccC-----CCcceeEEEEcCCCC------------eE
Q 017194 60 PVTSLCFKSGNEDIIYVSSGKEVKSFDVHMP----ASWRPLESYNY-----NKEEINQIVCNPKSS------------FL 118 (375)
Q Consensus 60 ~v~~l~~~~~~~~l~~~~~d~~i~iwd~~~~----~~~~~~~~~~~-----~~~~v~~~~~~~~~~------------~l 118 (375)
.-+.|+++|.+..-++....+...+||.... .....+-.+.. .....+.+.|+.... .+
T Consensus 24 N~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~F 103 (336)
T TIGR03118 24 NAWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRF 103 (336)
T ss_pred ccceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeE
Confidence 3467999999987777777789999998621 01111111111 124567777764322 25
Q ss_pred EEEeCCCcEEEEeCcCcee-----eeeEecCcccce-eEEEEeeC--CCcEEEEeecCCeEEEeeCCC
Q 017194 119 ACADDGGDVKIIDIRQHCL-----YKSLRAGHSSIC-SSVQFIPW--KPWEVISGGLDSKLVMWDFSK 178 (375)
Q Consensus 119 ~~~~~dg~i~iwd~~~~~~-----~~~~~~~~~~~v-~~~~~~~~--~~~~l~~~~~d~~i~~wd~~~ 178 (375)
+.+++||+|.-|...-... ...+.......| ..+++... +.++.++--..++|.+||-.-
T Consensus 104 if~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f 171 (336)
T TIGR03118 104 LFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSF 171 (336)
T ss_pred EEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCcc
Confidence 6778999999998542211 122221112333 45565543 444556666789999998553
No 463
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=91.78 E-value=7.2 Score=32.91 Aligned_cols=118 Identities=13% Similarity=0.052 Sum_probs=70.2
Q ss_pred CcceeEEEEcCCCCeEEEEeCCCc------EEEEeCcC--c--eee-----eeEecCccc--------ceeEEEEeeCCC
Q 017194 103 KEEINQIVCNPKSSFLACADDGGD------VKIIDIRQ--H--CLY-----KSLRAGHSS--------ICSSVQFIPWKP 159 (375)
Q Consensus 103 ~~~v~~~~~~~~~~~l~~~~~dg~------i~iwd~~~--~--~~~-----~~~~~~~~~--------~v~~~~~~~~~~ 159 (375)
-+.+..+.+.+++..+++.+++|. +..+++.. + ..+ ..+. ...+ ...+|++.+++.
T Consensus 19 ~GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~-~~~G~~~~~~~~D~Egi~~~~~g~ 97 (326)
T PF13449_consen 19 FGGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLR-DPDGQPFPKNGLDPEGIAVPPDGS 97 (326)
T ss_pred cCcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceecc-CCCCCcCCcCCCChhHeEEecCCC
Confidence 456788999876666666677777 66555543 1 011 1111 1111 345788877776
Q ss_pred cEEEEeecC------CeEEEeeCCCCCcceEEecCCCCCCCC--CCcccCCCceeEEeecCCccccCCCCEEEEEecC
Q 017194 160 WEVISGGLD------SKLVMWDFSKGRPNKIVNFGLPENNGN--AGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGD 229 (375)
Q Consensus 160 ~~l~~~~~d------~~i~~wd~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~d 229 (375)
++++.-.+ ..|+.++.. |+....+..+..-.... ..........-+|+++| +++.|+++.+.
T Consensus 98 -~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~------dG~~l~~~~E~ 167 (326)
T PF13449_consen 98 -FWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSP------DGRTLFAAMES 167 (326)
T ss_pred -EEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECC------CCCEEEEEECc
Confidence 56666666 789899977 77776664331110001 13333456788999999 78877766543
No 464
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=91.73 E-value=0.98 Score=24.11 Aligned_cols=32 Identities=13% Similarity=0.156 Sum_probs=22.6
Q ss_pred cCCCCEEEEeCCCCcEEEEecccCceeeEeee
Q 017194 25 RDRPGFVASSGEDGCICWFDLRSKDVQLVTDV 56 (375)
Q Consensus 25 ~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~ 56 (375)
|+++.++++...+++|.++|..+++.+..+..
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~v 32 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPV 32 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEEC
Confidence 45233444555678999999988888777765
No 465
>PF14779 BBS1: Ciliary BBSome complex subunit 1
Probab=91.71 E-value=5.8 Score=31.70 Aligned_cols=70 Identities=16% Similarity=0.174 Sum_probs=46.7
Q ss_pred CcceeEEEEcCC-------CCeEEEEeCCCcEEEEeCcCceeeeeEecCcccceeEEEEee--C-CCcEEEEeecCCeEE
Q 017194 103 KEEINQIVCNPK-------SSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIP--W-KPWEVISGGLDSKLV 172 (375)
Q Consensus 103 ~~~v~~~~~~~~-------~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~--~-~~~~l~~~~~d~~i~ 172 (375)
...|+|++--.. -..|+.|.++|.|.|.|......+..+. -..-++ .+.-.. + .++.++.++.||.|+
T Consensus 176 ~t~ITcm~tikk~~~d~~a~scLViGTE~~~i~iLd~~af~il~~~~-lpsvPv-~i~~~G~~devdyRI~Va~Rdg~iy 253 (257)
T PF14779_consen 176 QTVITCMATIKKSSADEDAVSCLVIGTESGEIYILDPQAFTILKQVQ-LPSVPV-FISVSGQYDEVDYRIVVACRDGKIY 253 (257)
T ss_pred CceeEEeeeecccccCCCCcceEEEEecCCeEEEECchhheeEEEEe-cCCCce-EEEEEeeeeccceEEEEEeCCCEEE
Confidence 345677665331 2468999999999999998888877776 333333 222221 1 345789999999987
Q ss_pred Ee
Q 017194 173 MW 174 (375)
Q Consensus 173 ~w 174 (375)
+.
T Consensus 254 ~i 255 (257)
T PF14779_consen 254 TI 255 (257)
T ss_pred EE
Confidence 64
No 466
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=91.67 E-value=1.1 Score=38.26 Aligned_cols=168 Identities=14% Similarity=0.115 Sum_probs=96.4
Q ss_pred CeeeecCCCceeEEEEecCCCCEEEEeCCCCcEEEEecccCcee-eE-eeecC----ccEE-EEEEeCCCCeEEEEcCCC
Q 017194 8 PRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQ-LV-TDVGN----GPVT-SLCFKSGNEDIIYVSSGK 80 (375)
Q Consensus 8 ~~~l~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~-~~-~~~~~----~~v~-~l~~~~~~~~l~~~~~d~ 80 (375)
++.+..-.+.|..+-..|| ++.+..-+. ..+.++++.+.... +. ..... ..|+ .+..-..|..++++..||
T Consensus 213 i~~L~~~~~~v~qllL~Pd-g~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~dG 290 (733)
T COG4590 213 IRLLSVPFSDVSQLLLTPD-GKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHEDG 290 (733)
T ss_pred hhhcCCCccchHhhEECCC-CCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcCCC
Confidence 3445555677888889999 787766554 57888888754431 11 11111 1122 222234566688888899
Q ss_pred eEEEE-ECCCCCc--ccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCceeeeeEecCcccceeEEEEeeC
Q 017194 81 EVKSF-DVHMPAS--WRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPW 157 (375)
Q Consensus 81 ~i~iw-d~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~ 157 (375)
-|.-| |.+.+.. ...++.++....++.-+.-..+.+-+++-+.+|++..+.-...+.+-.-. --..+.-++++|.
T Consensus 291 ~vsQWFdvr~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~~~--~~~~~~~~~~Sp~ 368 (733)
T COG4590 291 LVSQWFDVRRDGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLLFER--AYQAPQLVAMSPN 368 (733)
T ss_pred ceeeeeeeecCCCCcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCcceehhh--hhcCcceeeeCcc
Confidence 88766 5543222 22233333223344433333334557778888998887754443322211 2235677899999
Q ss_pred CCcEEEEeecCCeEEEeeCCCCCc
Q 017194 158 KPWEVISGGLDSKLVMWDFSKGRP 181 (375)
Q Consensus 158 ~~~~l~~~~~d~~i~~wd~~~~~~ 181 (375)
+.+ +++ ...|.++++.+++..+
T Consensus 369 ~~~-Ll~-e~~gki~~~~l~Nr~P 390 (733)
T COG4590 369 QAY-LLS-EDQGKIRLAQLENRNP 390 (733)
T ss_pred cch-hee-ecCCceEEEEecCCCC
Confidence 984 444 3567899998876544
No 467
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=91.28 E-value=1.5 Score=40.16 Aligned_cols=74 Identities=8% Similarity=0.187 Sum_probs=44.1
Q ss_pred CCCCeEEEEcCCCeEEEEECCC----CCcccc-----------cccc--------cCCCcceeEEEEcC----CCCeEEE
Q 017194 68 SGNEDIIYVSSGKEVKSFDVHM----PASWRP-----------LESY--------NYNKEEINQIVCNP----KSSFLAC 120 (375)
Q Consensus 68 ~~~~~l~~~~~d~~i~iwd~~~----~~~~~~-----------~~~~--------~~~~~~v~~~~~~~----~~~~l~~ 120 (375)
++...++.+..||.+....... +..... +..+ .........+++++ +..++++
T Consensus 156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t 235 (547)
T PF11715_consen 156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFT 235 (547)
T ss_dssp -SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEE
T ss_pred cCCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEE
Confidence 3666788888898887777653 111110 1111 00123455566666 6778999
Q ss_pred EeCCCcEEEEeCcCceeeeeE
Q 017194 121 ADDGGDVKIIDIRQHCLYKSL 141 (375)
Q Consensus 121 ~~~dg~i~iwd~~~~~~~~~~ 141 (375)
.+.|+.+++||+.+++++...
T Consensus 236 l~~D~~LRiW~l~t~~~~~~~ 256 (547)
T PF11715_consen 236 LSRDHTLRIWSLETGQCLATI 256 (547)
T ss_dssp EETTSEEEEEETTTTCEEEEE
T ss_pred EeCCCeEEEEECCCCeEEEEe
Confidence 999999999999999886654
No 468
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=91.20 E-value=10 Score=33.56 Aligned_cols=26 Identities=23% Similarity=0.282 Sum_probs=19.1
Q ss_pred ceeEEEEcCCCCeEEEEeCCCcEEEE
Q 017194 105 EINQIVCNPKSSFLACADDGGDVKII 130 (375)
Q Consensus 105 ~v~~~~~~~~~~~l~~~~~dg~i~iw 130 (375)
.|..+..++.|..++-.+.+|.+.++
T Consensus 105 eV~~vl~s~~GS~VaL~G~~Gi~vMe 130 (741)
T KOG4460|consen 105 EVYQVLLSPTGSHVALIGIKGLMVME 130 (741)
T ss_pred EEEEEEecCCCceEEEecCCeeEEEE
Confidence 46677788888888888888755443
No 469
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=91.02 E-value=14 Score=34.90 Aligned_cols=29 Identities=10% Similarity=0.088 Sum_probs=21.7
Q ss_pred CccEEEEEEeCCCCeEEEEcCCCeEEEEEC
Q 017194 58 NGPVTSLCFKSGNEDIIYVSSGKEVKSFDV 87 (375)
Q Consensus 58 ~~~v~~l~~~~~~~~l~~~~~d~~i~iwd~ 87 (375)
.-.|..+.++|+|.+++..|..| |.|-.+
T Consensus 84 ~f~v~~i~~n~~g~~lal~G~~~-v~V~~L 112 (717)
T PF10168_consen 84 LFEVHQISLNPTGSLLALVGPRG-VVVLEL 112 (717)
T ss_pred ceeEEEEEECCCCCEEEEEcCCc-EEEEEe
Confidence 35688899999999998888654 444444
No 470
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=90.51 E-value=2 Score=39.28 Aligned_cols=75 Identities=13% Similarity=0.185 Sum_probs=45.3
Q ss_pred CCCCeEEEEeCCCcEEEEeCcC----ceeeee-EecC--------------------cccceeEEEEee----CCCcEEE
Q 017194 113 PKSSFLACADDGGDVKIIDIRQ----HCLYKS-LRAG--------------------HSSICSSVQFIP----WKPWEVI 163 (375)
Q Consensus 113 ~~~~~l~~~~~dg~i~iwd~~~----~~~~~~-~~~~--------------------~~~~v~~~~~~~----~~~~~l~ 163 (375)
++...++.+..||.+....... +..... .... ....+..++.+. +.. +++
T Consensus 156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~ 234 (547)
T PF11715_consen 156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDT-FLF 234 (547)
T ss_dssp -SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTT-EEE
T ss_pred cCCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCC-EEE
Confidence 4666888888999988877653 111111 1000 112345555555 444 899
Q ss_pred EeecCCeEEEeeCCCCCcceEEecC
Q 017194 164 SGGLDSKLVMWDFSKGRPNKIVNFG 188 (375)
Q Consensus 164 ~~~~d~~i~~wd~~~~~~~~~~~~~ 188 (375)
+.+.|+++|+||+.+++++......
T Consensus 235 tl~~D~~LRiW~l~t~~~~~~~~~~ 259 (547)
T PF11715_consen 235 TLSRDHTLRIWSLETGQCLATIDLL 259 (547)
T ss_dssp EEETTSEEEEEETTTTCEEEEEETT
T ss_pred EEeCCCeEEEEECCCCeEEEEeccc
Confidence 9999999999999999997776543
No 471
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=90.33 E-value=8.9 Score=31.40 Aligned_cols=117 Identities=16% Similarity=0.254 Sum_probs=64.5
Q ss_pred CcEEEEecccCceeeEeeecCccEEEEEEeCCCCeEEEEc------CCCeEEEEECCCCCccccccc-c-cCCCcceeEE
Q 017194 38 GCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVS------SGKEVKSFDVHMPASWRPLES-Y-NYNKEEINQI 109 (375)
Q Consensus 38 ~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~------~d~~i~iwd~~~~~~~~~~~~-~-~~~~~~v~~~ 109 (375)
..|++||..+.+-..--.+-.+.|++|.|..+.+.++.|. ....+..||..+.. +..+.. . ..-.++|..+
T Consensus 16 ~~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~-w~~~~~~~s~~ipgpv~a~ 94 (281)
T PF12768_consen 16 PGLCLYDTDNSQWSSPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQT-WSSLGGGSSNSIPGPVTAL 94 (281)
T ss_pred CEEEEEECCCCEeecCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCe-eeecCCcccccCCCcEEEE
Confidence 3599999886654333333467899999987666666653 24578899988642 333332 1 1124677777
Q ss_pred EEcC-CC-CeEEEEe-CCC--cEEEEeCcCceeeee-EecCcccceeEEEEee
Q 017194 110 VCNP-KS-SFLACAD-DGG--DVKIIDIRQHCLYKS-LRAGHSSICSSVQFIP 156 (375)
Q Consensus 110 ~~~~-~~-~~l~~~~-~dg--~i~iwd~~~~~~~~~-~~~~~~~~v~~~~~~~ 156 (375)
.+.. |+ +..+.|. .++ .|..||=.+-..+.. .. .....|..+.+-|
T Consensus 95 ~~~~~d~~~~~~aG~~~~g~~~l~~~dGs~W~~i~~~~~-~~~t~I~~l~~~~ 146 (281)
T PF12768_consen 95 TFISNDGSNFWVAGRSANGSTFLMKYDGSSWSSIGSDIL-GSGTTIRGLQVLP 146 (281)
T ss_pred EeeccCCceEEEeceecCCCceEEEEcCCceEecccccc-CCCCEEEEEEEEe
Confidence 7743 33 3343443 233 356665433333332 11 2234555555444
No 472
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=90.31 E-value=18 Score=34.84 Aligned_cols=157 Identities=10% Similarity=0.017 Sum_probs=0.0
Q ss_pred CceeEEEEecCCCCEEEEeCCCCcEEEEec-----ccCceeeEeeecCccE------E----EEEEeCCCCeEEEEcCCC
Q 017194 16 ATATCCIASRDRPGFVASSGEDGCICWFDL-----RSKDVQLVTDVGNGPV------T----SLCFKSGNEDIIYVSSGK 80 (375)
Q Consensus 16 ~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~-----~~~~~~~~~~~~~~~v------~----~l~~~~~~~~l~~~~~d~ 80 (375)
.+...++|+|.+.+.||.....|.-.||++ ...........+.+.+ . .+.|.++-+.|+.+. ..
T Consensus 146 ~~~aDv~FnP~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~-r~ 224 (765)
T PF10214_consen 146 FPHADVAFNPWDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCN-RS 224 (765)
T ss_pred CccceEEeccCccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEc-CC
Q ss_pred eEEEEECCCCCcccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcC----ceeeeeEecCcccce----eEE
Q 017194 81 EVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQ----HCLYKSLRAGHSSIC----SSV 152 (375)
Q Consensus 81 ~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~----~~~~~~~~~~~~~~v----~~~ 152 (375)
.+.++|+++...... -........|.++.-+|...-.+.--....|...++.. .+.+..++ |.... ..+
T Consensus 225 ~l~~~d~~~~~~~~~-l~~~~~~~~IlDv~~~~~~~~~~FiLTs~eiiw~~~~~~~~~~~~llSwk--H~~d~~D~tLrl 301 (765)
T PF10214_consen 225 KLMLIDFESNWQTEY-LVTAKTWSWILDVKRSPDNPSHVFILTSKEIIWLDVKSSSEKLTRLLSWK--HFRDPEDPTLRL 301 (765)
T ss_pred ceEEEECCCCCccch-hccCCChhheeeEEecCCccceEEEEecCeEEEEEccCCCCCeeeeeecc--cccCCCCCceEE
Q ss_pred EEeeC-CC--cEEEEeecCCeEEEeeC
Q 017194 153 QFIPW-KP--WEVISGGLDSKLVMWDF 176 (375)
Q Consensus 153 ~~~~~-~~--~~l~~~~~d~~i~~wd~ 176 (375)
..... +. .+++.......|.+|.+
T Consensus 302 ~~~~~~~~~~~~~lyS~~~~~v~v~~f 328 (765)
T PF10214_consen 302 SVQKVGDTDFVVFLYSRLNPLVYVYFF 328 (765)
T ss_pred EEEEcCCCEEEEEEEcCCCCcEEEEEE
No 473
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.30 E-value=11 Score=32.63 Aligned_cols=120 Identities=15% Similarity=0.189 Sum_probs=78.8
Q ss_pred cCccEEEEEEeCCCCeEEEEcCCCeEEEEECCCCCc-ccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCc
Q 017194 57 GNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPAS-WRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQH 135 (375)
Q Consensus 57 ~~~~v~~l~~~~~~~~l~~~~~d~~i~iwd~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 135 (375)
..++|.++.|++|.+.||+--.+++|.+++....+. .......+.....|....|+.+ .-+|.....| +.+|-....
T Consensus 65 d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s-~e~A~i~~~G-~e~y~v~pe 142 (657)
T KOG2377|consen 65 DKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSS-TEIAFITDQG-IEFYQVLPE 142 (657)
T ss_pred CCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecC-eeEEEEecCC-eEEEEEchh
Confidence 467999999999999999999999999999843222 2223333333556889999876 4566555444 666655432
Q ss_pred -eeeeeEecCcccceeEEEEeeCCCcEEEEee-cCCeEEEeeCCCC
Q 017194 136 -CLYKSLRAGHSSICSSVQFIPWKPWEVISGG-LDSKLVMWDFSKG 179 (375)
Q Consensus 136 -~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~d~~i~~wd~~~~ 179 (375)
+.++..+ .|...|+-..|.++..-.+++.+ ..+++.=+-++++
T Consensus 143 krslRlVk-s~~~nvnWy~yc~et~v~LL~t~~~~n~lnpf~~~~~ 187 (657)
T KOG2377|consen 143 KRSLRLVK-SHNLNVNWYMYCPETAVILLSTTVLENVLNPFHFRAG 187 (657)
T ss_pred hhhhhhhh-hcccCccEEEEccccceEeeeccccccccccEEEeec
Confidence 3345555 78888999999998873333333 3444444444443
No 474
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=90.02 E-value=6.2 Score=38.90 Aligned_cols=34 Identities=9% Similarity=0.099 Sum_probs=30.7
Q ss_pred CCCccEEEEEEeecCCCCcEEEEecCCCeEEEEeCCC
Q 017194 288 GHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSR 324 (375)
Q Consensus 288 ~~~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd~~~ 324 (375)
.+..+|..+++. ...+.+.+-++.|+|.+||+..
T Consensus 240 ~~~dpI~qi~ID---~SR~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 240 SSKDPIRQITID---NSRNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred CCCCcceeeEec---cccceeeeeccCceEEEEEccC
Confidence 678899999998 7778899999999999999987
No 475
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=90.01 E-value=1.5 Score=22.99 Aligned_cols=30 Identities=7% Similarity=0.075 Sum_probs=20.7
Q ss_pred cccceeEEEEeeCCCcEEEEeecC--CeEEEe
Q 017194 145 HSSICSSVQFIPWKPWEVISGGLD--SKLVMW 174 (375)
Q Consensus 145 ~~~~v~~~~~~~~~~~~l~~~~~d--~~i~~w 174 (375)
....-....|+|||++++.++..+ |.-.||
T Consensus 7 ~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 7 SPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred CCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 344567889999999766777666 666555
No 476
>PRK13684 Ycf48-like protein; Provisional
Probab=89.77 E-value=11 Score=31.83 Aligned_cols=273 Identities=9% Similarity=-0.007 Sum_probs=124.6
Q ss_pred CCceeEEEEecCCCCEEEEeCCCCcEEEEecc-cCceeeE----eeecCccEEEEEEeCCCCeEEEEcCCCeEEEEECCC
Q 017194 15 KATATCCIASRDRPGFVASSGEDGCICWFDLR-SKDVQLV----TDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHM 89 (375)
Q Consensus 15 ~~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~-~~~~~~~----~~~~~~~v~~l~~~~~~~~l~~~~~d~~i~iwd~~~ 89 (375)
...+.++.|..+ .+-+++|. +|.| |... .|+.=+. +......+.++.|.++ ..+++ +..+.|.. .-+.
T Consensus 45 ~~~l~~v~F~d~-~~g~avG~-~G~i--l~T~DgG~tW~~~~~~~~~~~~~l~~v~~~~~-~~~~~-G~~g~i~~-S~Dg 117 (334)
T PRK13684 45 EANLLDIAFTDP-NHGWLVGS-NRTL--LETNDGGETWEERSLDLPEENFRLISISFKGD-EGWIV-GQPSLLLH-TTDG 117 (334)
T ss_pred CCceEEEEEeCC-CcEEEEEC-CCEE--EEEcCCCCCceECccCCcccccceeeeEEcCC-cEEEe-CCCceEEE-ECCC
Confidence 457889999854 55566664 4433 3322 2222111 1112334777888643 33443 44454322 2233
Q ss_pred CCcccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCceeeeeEecCcccceeEEEEeeCCCcEEEEeecCC
Q 017194 90 PASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDS 169 (375)
Q Consensus 90 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~ 169 (375)
++.++.+............+.....+..+++ +..|.|..=+ +.++.-..+...-...+.++.+.|++. ++..+..|
T Consensus 118 G~tW~~~~~~~~~~~~~~~i~~~~~~~~~~~-g~~G~i~~S~-DgG~tW~~~~~~~~g~~~~i~~~~~g~--~v~~g~~G 193 (334)
T PRK13684 118 GKNWTRIPLSEKLPGSPYLITALGPGTAEMA-TNVGAIYRTT-DGGKNWEALVEDAAGVVRNLRRSPDGK--YVAVSSRG 193 (334)
T ss_pred CCCCeEccCCcCCCCCceEEEEECCCcceee-eccceEEEEC-CCCCCceeCcCCCcceEEEEEECCCCe--EEEEeCCc
Confidence 4445444321000111122222222223333 3445443322 233332222212345788899999875 45555566
Q ss_pred eEEEeeCCCC-CcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCcceeecccc
Q 017194 170 KLVMWDFSKG-RPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKS 248 (375)
Q Consensus 170 ~i~~wd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~ 248 (375)
.+..- .+.+ +.-..+... ....++++.+.+ +++.++++ ..|.+++=....+..-.....
T Consensus 194 ~i~~s-~~~gg~tW~~~~~~------------~~~~l~~i~~~~------~g~~~~vg-~~G~~~~~s~d~G~sW~~~~~ 253 (334)
T PRK13684 194 NFYST-WEPGQTAWTPHQRN------------SSRRLQSMGFQP------DGNLWMLA-RGGQIRFNDPDDLESWSKPII 253 (334)
T ss_pred eEEEE-cCCCCCeEEEeeCC------------CcccceeeeEcC------CCCEEEEe-cCCEEEEccCCCCCccccccC
Confidence 55432 1222 222222222 245788889988 67776665 456654322222221111111
Q ss_pred c---CCCCCCceeecccccceee--eee-ee-cCCcceeEeeeeecCCCccEEEEEEeecCCCCcEEEEecCCCeEEEEe
Q 017194 249 T---TKPLKGSQSTSKVNIRDAE--MEI-LD-QSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWD 321 (375)
Q Consensus 249 ~---~~~~~~~~~~s~~g~~~~~--~~~-~~-~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd 321 (375)
+ .......+.+.+++..++. .+. .. ......++.......-....+.+.|. .+++.++ .+..|.|.-|+
T Consensus 254 ~~~~~~~~l~~v~~~~~~~~~~~G~~G~v~~S~d~G~tW~~~~~~~~~~~~~~~~~~~---~~~~~~~-~G~~G~il~~~ 329 (334)
T PRK13684 254 PEITNGYGYLDLAYRTPGEIWAGGGNGTLLVSKDGGKTWEKDPVGEEVPSNFYKIVFL---DPEKGFV-LGQRGVLLRYV 329 (334)
T ss_pred CccccccceeeEEEcCCCCEEEEcCCCeEEEeCCCCCCCeECCcCCCCCcceEEEEEe---CCCceEE-ECCCceEEEec
Confidence 1 1122345667777765554 121 11 12223333322212223467778876 5565555 45568887776
Q ss_pred C
Q 017194 322 C 322 (375)
Q Consensus 322 ~ 322 (375)
-
T Consensus 330 ~ 330 (334)
T PRK13684 330 G 330 (334)
T ss_pred C
Confidence 4
No 477
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=89.76 E-value=11 Score=31.75 Aligned_cols=107 Identities=11% Similarity=0.180 Sum_probs=62.5
Q ss_pred CccEEEEEEeCCCCeEEEEcCCCe------EEEEECCCCC-ccccc---c--cccCCC--------cceeEEEEcCCCCe
Q 017194 58 NGPVTSLCFKSGNEDIIYVSSGKE------VKSFDVHMPA-SWRPL---E--SYNYNK--------EEINQIVCNPKSSF 117 (375)
Q Consensus 58 ~~~v~~l~~~~~~~~l~~~~~d~~------i~iwd~~~~~-~~~~~---~--~~~~~~--------~~v~~~~~~~~~~~ 117 (375)
-+.+..|.+.+++..+++.+.++. +...++.... ....+ . .+.... ...-++++.+++.+
T Consensus 19 ~GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~~ 98 (326)
T PF13449_consen 19 FGGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGSF 98 (326)
T ss_pred cCcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCCE
Confidence 356778888866666777777776 6555554310 00111 0 011111 13447888777777
Q ss_pred EEEEeCC------CcEEEEeCcCceeeeeEec--------------CcccceeEEEEeeCCCcEEEEee
Q 017194 118 LACADDG------GDVKIIDIRQHCLYKSLRA--------------GHSSICSSVQFIPWKPWEVISGG 166 (375)
Q Consensus 118 l~~~~~d------g~i~iwd~~~~~~~~~~~~--------------~~~~~v~~~~~~~~~~~~l~~~~ 166 (375)
+++.-.+ ..|+.++.. ++.+..+.. ..+....+|+++|+|. .|+++.
T Consensus 99 ~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~-~l~~~~ 165 (326)
T PF13449_consen 99 WISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGR-TLFAAM 165 (326)
T ss_pred EEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCC-EEEEEE
Confidence 7776666 678888865 555443310 1345788999999998 455544
No 478
>PLN02153 epithiospecifier protein
Probab=89.30 E-value=13 Score=31.67 Aligned_cols=105 Identities=11% Similarity=0.153 Sum_probs=50.2
Q ss_pred CCEEEEeCCC-------CcEEEEecccCceeeEeee---cCc---cEEEEEEeCCCCeEEEEcCC-----CeEEEEECCC
Q 017194 28 PGFVASSGED-------GCICWFDLRSKDVQLVTDV---GNG---PVTSLCFKSGNEDIIYVSSG-----KEVKSFDVHM 89 (375)
Q Consensus 28 ~~~l~s~~~d-------~~i~iw~~~~~~~~~~~~~---~~~---~v~~l~~~~~~~~l~~~~~d-----~~i~iwd~~~ 89 (375)
+.+++.|+.+ ..+.+||+.+.+-...... ... ....+.+ +++.++.|+.+ ..+.+||+.+
T Consensus 33 ~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~t 110 (341)
T PLN02153 33 DKLYSFGGELKPNEHIDKDLYVFDFNTHTWSIAPANGDVPRISCLGVRMVAV--GTKLYIFGGRDEKREFSDFYSYDTVK 110 (341)
T ss_pred CEEEEECCccCCCCceeCcEEEEECCCCEEEEcCccCCCCCCccCceEEEEE--CCEEEEECCCCCCCccCcEEEEECCC
Confidence 5677777753 2577888776543211110 010 1112222 45566666653 3578889875
Q ss_pred CCcccccccccC---CCcceeEEEEcCCCCeEEEEeCC-----------CcEEEEeCcCc
Q 017194 90 PASWRPLESYNY---NKEEINQIVCNPKSSFLACADDG-----------GDVKIIDIRQH 135 (375)
Q Consensus 90 ~~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~~~~~d-----------g~i~iwd~~~~ 135 (375)
. .+..+..... ........+..-+++.++.|+.+ ..+.+||+++.
T Consensus 111 ~-~W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~ 169 (341)
T PLN02153 111 N-EWTFLTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAYNIADG 169 (341)
T ss_pred C-EEEEeccCCCCCCCCCceeeEEEEECCEEEEECCccCCCccCCCcccceEEEEECCCC
Confidence 4 2333332210 01111111222345566666643 24778888765
No 479
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.22 E-value=9.7 Score=37.53 Aligned_cols=30 Identities=17% Similarity=0.231 Sum_probs=24.9
Q ss_pred CceeEEEEecCCCCEEEEeCCCCcEEEEecc
Q 017194 16 ATATCCIASRDRPGFVASSGEDGCICWFDLR 46 (375)
Q Consensus 16 ~~i~~~~~~~~~~~~l~s~~~d~~i~iw~~~ 46 (375)
.....++|+|. ..++|.+...|.|+++-..
T Consensus 36 ~~~~~~afD~~-q~llai~t~tg~i~~yg~~ 65 (993)
T KOG1983|consen 36 STPSALAFDPT-QGLLAIGTRTGAIKIYGQP 65 (993)
T ss_pred CCCcceeeccc-cceEEEEEecccEEEeccc
Confidence 34556889998 8899999999999999754
No 480
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=88.44 E-value=6.6 Score=29.45 Aligned_cols=31 Identities=13% Similarity=0.264 Sum_probs=25.1
Q ss_pred cceeEEEEcCCC------CeEEEEeCCCcEEEEeCcC
Q 017194 104 EEINQIVCNPKS------SFLACADDGGDVKIIDIRQ 134 (375)
Q Consensus 104 ~~v~~~~~~~~~------~~l~~~~~dg~i~iwd~~~ 134 (375)
..+..++|||.| .+|++.+.++.|.+|....
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 479999999943 3588888999999998653
No 481
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=88.01 E-value=6.6 Score=34.64 Aligned_cols=26 Identities=19% Similarity=0.083 Sum_probs=19.0
Q ss_pred ceeEEEEecCCCCEEEEeCCCCcEEEE
Q 017194 17 TATCCIASRDRPGFVASSGEDGCICWF 43 (375)
Q Consensus 17 ~i~~~~~~~~~~~~l~s~~~d~~i~iw 43 (375)
.|..+..++. |..++-+|.+|.+..+
T Consensus 105 eV~~vl~s~~-GS~VaL~G~~Gi~vMe 130 (741)
T KOG4460|consen 105 EVYQVLLSPT-GSHVALIGIKGLMVME 130 (741)
T ss_pred EEEEEEecCC-CceEEEecCCeeEEEE
Confidence 4677788888 7888888888855443
No 482
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=87.95 E-value=11 Score=29.21 Aligned_cols=114 Identities=13% Similarity=0.086 Sum_probs=65.2
Q ss_pred CeEEEEeCCCcEEEEeCc--CceeeeeEecCcccceeEEEEeeCCCcEEEEeecC---C---eEEEe---eCC--CCCcc
Q 017194 116 SFLACADDGGDVKIIDIR--QHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLD---S---KLVMW---DFS--KGRPN 182 (375)
Q Consensus 116 ~~l~~~~~dg~i~iwd~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d---~---~i~~w---d~~--~~~~~ 182 (375)
..|+.+...+.|.+|++. ..+.+..|. --+.|..+.++..|+ ++++--.+ . .+|+| +.. ..+++
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~--Tv~~V~~l~y~~~GD-YlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v 105 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFS--TVGRVLQLVYSEAGD-YLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPV 105 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEc--chhheeEEEeccccc-eEEEEEeecCCccceEEEEEEEhhhhcccCCcE
Confidence 344444566789999988 335566776 347899999999999 57775432 2 45554 322 22333
Q ss_pred eEEecCCCCC---CCCCC------cccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCC
Q 017194 183 KIVNFGLPEN---NGNAG------QCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIES 239 (375)
Q Consensus 183 ~~~~~~~~~~---~~~~~------~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 239 (375)
.....+++-. ..... ..-....+.+++..|. .|++++ |+. +.+.+|.+..
T Consensus 106 ~vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~-----tG~LlV-g~~-~~l~lf~l~~ 164 (215)
T PF14761_consen 106 RVRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPV-----TGNLLV-GCG-NKLVLFTLKY 164 (215)
T ss_pred EEEEcccccccCCCCccccceEEEEecCCCCCCEEEecCC-----CCCEEE-EcC-CEEEEEEEEE
Confidence 3222231110 00000 0012346778888885 566554 443 5899998875
No 483
>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)
Probab=87.86 E-value=15 Score=30.60 Aligned_cols=69 Identities=10% Similarity=0.078 Sum_probs=47.9
Q ss_pred eeEEEEecCCCCEEEEeCCCCcEEEEecccCceeeEeeecCccE---EE--EEEeCCCCeEEEEcCCCeEEEEEC
Q 017194 18 ATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPV---TS--LCFKSGNEDIIYVSSGKEVKSFDV 87 (375)
Q Consensus 18 i~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~v---~~--l~~~~~~~~l~~~~~d~~i~iwd~ 87 (375)
|+++...++ |.+|+|+-.-.+|.+.+..+|+.+..+.+....= .. .++-.+-+.+-....++.|.++|=
T Consensus 146 iNsV~~~~~-G~yLiS~R~~~~i~~I~~~tG~I~W~lgG~~~~df~~~~~~f~~QHdar~~~~~~~~~~IslFDN 219 (299)
T PF14269_consen 146 INSVDKDDD-GDYLISSRNTSTIYKIDPSTGKIIWRLGGKRNSDFTLPATNFSWQHDARFLNESNDDGTISLFDN 219 (299)
T ss_pred eeeeeecCC-ccEEEEecccCEEEEEECCCCcEEEEeCCCCCCcccccCCcEeeccCCEEeccCCCCCEEEEEcC
Confidence 778888887 8999999988999999999999988887652211 11 222223333333456788888886
No 484
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=87.67 E-value=17 Score=31.28 Aligned_cols=114 Identities=9% Similarity=0.006 Sum_probs=69.9
Q ss_pred CCCeEEEEcCCCeEEEEECCCCCcccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCceeeeeEecCcc-c
Q 017194 69 GNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHS-S 147 (375)
Q Consensus 69 ~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-~ 147 (375)
++ .+.++..+|.|.-.|.++++..-...... ....+..-.+..+|+ ++.++.++.++.+|.++++.+.... ... .
T Consensus 68 dg-~v~~~~~~G~i~A~d~~~g~~~W~~~~~~-~~~~~~~~~~~~~G~-i~~g~~~g~~y~ld~~~G~~~W~~~-~~~~~ 143 (370)
T COG1520 68 DG-TVYVGTRDGNIFALNPDTGLVKWSYPLLG-AVAQLSGPILGSDGK-IYVGSWDGKLYALDASTGTLVWSRN-VGGSP 143 (370)
T ss_pred CC-eEEEecCCCcEEEEeCCCCcEEecccCcC-cceeccCceEEeCCe-EEEecccceEEEEECCCCcEEEEEe-cCCCe
Confidence 44 45556778888888888776322111110 011222222222564 8888889999999998898887777 333 1
Q ss_pred ceeEEEEeeCCCcEEEEeecCCeEEEeeCCCCCcceEEecC
Q 017194 148 ICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFG 188 (375)
Q Consensus 148 ~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~ 188 (375)
.+..-....++ .+..++.++.+...|..+++........
T Consensus 144 ~~~~~~v~~~~--~v~~~s~~g~~~al~~~tG~~~W~~~~~ 182 (370)
T COG1520 144 YYASPPVVGDG--TVYVGTDDGHLYALNADTGTLKWTYETP 182 (370)
T ss_pred EEecCcEEcCc--EEEEecCCCeEEEEEccCCcEEEEEecC
Confidence 12222233344 4555557899999999999888877654
No 485
>PLN02153 epithiospecifier protein
Probab=87.49 E-value=17 Score=30.93 Aligned_cols=20 Identities=35% Similarity=0.414 Sum_probs=13.0
Q ss_pred EEEEeecC-----CeEEEeeCCCCC
Q 017194 161 EVISGGLD-----SKLVMWDFSKGR 180 (375)
Q Consensus 161 ~l~~~~~d-----~~i~~wd~~~~~ 180 (375)
+++.|+.+ ..+.+||+.+.+
T Consensus 88 iyv~GG~~~~~~~~~v~~yd~~t~~ 112 (341)
T PLN02153 88 LYIFGGRDEKREFSDFYSYDTVKNE 112 (341)
T ss_pred EEEECCCCCCCccCcEEEEECCCCE
Confidence 67777753 247788877644
No 486
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=87.29 E-value=12 Score=28.98 Aligned_cols=51 Identities=10% Similarity=0.180 Sum_probs=34.9
Q ss_pred EEEEeecCCeEEEeeCCCCCcceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecC
Q 017194 161 EVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGD 229 (375)
Q Consensus 161 ~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~d 229 (375)
.|+.+...+.|.+|++..........+. .-+.|..+.++. .|+++++--.+
T Consensus 30 ~Lfva~~g~~Vev~~l~~~~~~~~~~F~------------Tv~~V~~l~y~~------~GDYlvTlE~k 80 (215)
T PF14761_consen 30 ALFVAASGCKVEVYDLEQEECPLLCTFS------------TVGRVLQLVYSE------AGDYLVTLEEK 80 (215)
T ss_pred eEEEEcCCCEEEEEEcccCCCceeEEEc------------chhheeEEEecc------ccceEEEEEee
Confidence 4555566788999999844333333323 347889999998 69999987543
No 487
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=87.22 E-value=19 Score=31.19 Aligned_cols=67 Identities=15% Similarity=0.258 Sum_probs=30.9
Q ss_pred CCCeEEEEcC-CCeEEEEECCCC-CcccccccccCCCcceeEEEEcCCCCeEEEEeCC-----------CcEEEEeCcCc
Q 017194 69 GNEDIIYVSS-GKEVKSFDVHMP-ASWRPLESYNYNKEEINQIVCNPKSSFLACADDG-----------GDVKIIDIRQH 135 (375)
Q Consensus 69 ~~~~l~~~~~-d~~i~iwd~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----------g~i~iwd~~~~ 135 (375)
+++..+.++. +..+.++|+... ..+..+..+... .........-++...+.|+.. ..+..||..+.
T Consensus 38 ~~~iyv~gG~~~~~~~~~d~~~~~~~W~~l~~~p~~-~r~~~~~v~~~~~IYV~GG~~~~~~~~~~~~~~~v~~YD~~~n 116 (376)
T PRK14131 38 NNTVYVGLGSAGTSWYKLDLNAPSKGWTKIAAFPGG-PREQAVAAFIDGKLYVFGGIGKTNSEGSPQVFDDVYKYDPKTN 116 (376)
T ss_pred CCEEEEEeCCCCCeEEEEECCCCCCCeEECCcCCCC-CcccceEEEECCEEEEEcCCCCCCCCCceeEcccEEEEeCCCC
Confidence 3444444443 345677777532 233333333210 111111122345566666643 24777887654
Q ss_pred e
Q 017194 136 C 136 (375)
Q Consensus 136 ~ 136 (375)
+
T Consensus 117 ~ 117 (376)
T PRK14131 117 S 117 (376)
T ss_pred E
Confidence 3
No 488
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=87.21 E-value=2.9 Score=21.87 Aligned_cols=33 Identities=15% Similarity=0.208 Sum_probs=19.9
Q ss_pred eeecCCCceeEEEEecCCCCEEE-EeCCC--CcEEEE
Q 017194 10 RLRGHKATATCCIASRDRPGFVA-SSGED--GCICWF 43 (375)
Q Consensus 10 ~l~~h~~~i~~~~~~~~~~~~l~-s~~~d--~~i~iw 43 (375)
.+......-....|+|| |+.|+ ++..+ |.-.||
T Consensus 3 ~~t~~~~~~~~p~~SpD-Gk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 3 QLTNSPGDDGSPAWSPD-GKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp EES-SSSSEEEEEE-TT-SSEEEEEEECT--SSEEEE
T ss_pred CcccCCccccCEEEecC-CCEEEEEecCCCCCCcCEE
Confidence 34445566778899999 66555 55555 665555
No 489
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=87.09 E-value=17 Score=30.59 Aligned_cols=107 Identities=8% Similarity=0.058 Sum_probs=51.0
Q ss_pred CCCeEEEEcCC-----CeEEEEECCCCCc---ccccccccCCCcceeEEEEcCCCCeEEEEeC-----CCcEEEEeCcCc
Q 017194 69 GNEDIIYVSSG-----KEVKSFDVHMPAS---WRPLESYNYNKEEINQIVCNPKSSFLACADD-----GGDVKIIDIRQH 135 (375)
Q Consensus 69 ~~~~l~~~~~d-----~~i~iwd~~~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-----dg~i~iwd~~~~ 135 (375)
++..++.|+.+ ..+..+|+.+.+- +..+..+....... +++. -+++..+.|+. ...+..||+.+.
T Consensus 72 ~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~-~~~~-~~~~iYv~GG~~~~~~~~~v~~yd~~~~ 149 (323)
T TIGR03548 72 ENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENG-SACY-KDGTLYVGGGNRNGKPSNKSYLFNLETQ 149 (323)
T ss_pred CCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCc-eEEE-ECCEEEEEeCcCCCccCceEEEEcCCCC
Confidence 45566666654 3567777765432 12222221111111 1222 24556666653 235888888765
Q ss_pred ee--eeeEecCcccceeEEEEeeCCCcEEEEeecCC----eEEEeeCCCCC
Q 017194 136 CL--YKSLRAGHSSICSSVQFIPWKPWEVISGGLDS----KLVMWDFSKGR 180 (375)
Q Consensus 136 ~~--~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~----~i~~wd~~~~~ 180 (375)
+= +..+. . .......+..-++. +++.|+.++ .+..||..+.+
T Consensus 150 ~W~~~~~~p-~-~~r~~~~~~~~~~~-iYv~GG~~~~~~~~~~~yd~~~~~ 197 (323)
T TIGR03548 150 EWFELPDFP-G-EPRVQPVCVKLQNE-LYVFGGGSNIAYTDGYKYSPKKNQ 197 (323)
T ss_pred CeeECCCCC-C-CCCCcceEEEECCE-EEEEcCCCCccccceEEEecCCCe
Confidence 32 22222 1 11112222233444 777777654 24578877654
No 490
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=86.78 E-value=22 Score=31.51 Aligned_cols=58 Identities=7% Similarity=0.003 Sum_probs=37.2
Q ss_pred CccEEEEEEeCCCCeEEEEcCCCeEEEEECCCCCcc--cccccc--cCCCcceeEEEEcCCC
Q 017194 58 NGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASW--RPLESY--NYNKEEINQIVCNPKS 115 (375)
Q Consensus 58 ~~~v~~l~~~~~~~~l~~~~~d~~i~iwd~~~~~~~--~~~~~~--~~~~~~v~~~~~~~~~ 115 (375)
-.....|+|.|+++.|++--..|.|++++..++... ..+... .........|+++|+-
T Consensus 29 L~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF 90 (454)
T TIGR03606 29 LNKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDF 90 (454)
T ss_pred CCCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCc
Confidence 345688999999976665544699999986543211 111111 1125778999999874
No 491
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=86.74 E-value=16 Score=29.94 Aligned_cols=95 Identities=13% Similarity=0.220 Sum_probs=56.9
Q ss_pred CCeEEEEECCCCCcccccc-cccCCCcceeEEEEcCCCCeEEEEe------CCCcEEEEeCcCceeeeeEec----Cccc
Q 017194 79 GKEVKSFDVHMPASWRPLE-SYNYNKEEINQIVCNPKSSFLACAD------DGGDVKIIDIRQHCLYKSLRA----GHSS 147 (375)
Q Consensus 79 d~~i~iwd~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~------~dg~i~iwd~~~~~~~~~~~~----~~~~ 147 (375)
...|++||..+.+ +..+. .+ .+.|+.+.|..+.++++.|. ....+..||..+..- ..+.. .-.+
T Consensus 15 C~~lC~yd~~~~q-W~~~g~~i---~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w-~~~~~~~s~~ipg 89 (281)
T PF12768_consen 15 CPGLCLYDTDNSQ-WSSPGNGI---SGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTW-SSLGGGSSNSIPG 89 (281)
T ss_pred CCEEEEEECCCCE-eecCCCCc---eEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCee-eecCCcccccCCC
Confidence 3579999988543 33332 33 67899999987777777764 345688899876532 23331 1236
Q ss_pred ceeEEEEeeCCC-cEEEEee-cC--CeEEEeeCCC
Q 017194 148 ICSSVQFIPWKP-WEVISGG-LD--SKLVMWDFSK 178 (375)
Q Consensus 148 ~v~~~~~~~~~~-~~l~~~~-~d--~~i~~wd~~~ 178 (375)
+|..+.+..... .+.+.|. .+ ..|..||=.+
T Consensus 90 pv~a~~~~~~d~~~~~~aG~~~~g~~~l~~~dGs~ 124 (281)
T PF12768_consen 90 PVTALTFISNDGSNFWVAGRSANGSTFLMKYDGSS 124 (281)
T ss_pred cEEEEEeeccCCceEEEeceecCCCceEEEEcCCc
Confidence 788887754333 2444443 23 3466666443
No 492
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=86.30 E-value=21 Score=30.80 Aligned_cols=202 Identities=11% Similarity=-0.022 Sum_probs=103.3
Q ss_pred CEEEEeCCCCcEEEEecccCceeeEeeec--CccEEEEEEeCCCCeEEEEcCCCeEEEEECCCCCcccccccccCCCcce
Q 017194 29 GFVASSGEDGCICWFDLRSKDVQLVTDVG--NGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEI 106 (375)
Q Consensus 29 ~~l~s~~~d~~i~iw~~~~~~~~~~~~~~--~~~v~~l~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v 106 (375)
..+..+..+|.|.-.|.+++..+.....- ...+..-.+..+|+ ++.++.++.++.+|..+++..-...... . ..+
T Consensus 69 g~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~-i~~g~~~g~~y~ld~~~G~~~W~~~~~~-~-~~~ 145 (370)
T COG1520 69 GTVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGK-IYVGSWDGKLYALDASTGTLVWSRNVGG-S-PYY 145 (370)
T ss_pred CeEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCe-EEEecccceEEEEECCCCcEEEEEecCC-C-eEE
Confidence 34555677888888888888765332221 12223323333665 7778888888888987665433222211 0 011
Q ss_pred eEEEEcCCCCeEEEEeCCCcEEEEeCcCceeeeeEecCc---ccceeEEEEeeCCCcEEEEeec--CCeEEEeeCCCCCc
Q 017194 107 NQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGH---SSICSSVQFIPWKPWEVISGGL--DSKLVMWDFSKGRP 181 (375)
Q Consensus 107 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~---~~~v~~~~~~~~~~~~l~~~~~--d~~i~~wd~~~~~~ 181 (375)
.....-.++ .+..++.++.+...|..+++.+-... .. ...+..--...++ .+..+.. ++.+.-.|..+|..
T Consensus 146 ~~~~v~~~~-~v~~~s~~g~~~al~~~tG~~~W~~~-~~~~~~~~~~~~~~~~~~--~vy~~~~~~~~~~~a~~~~~G~~ 221 (370)
T COG1520 146 ASPPVVGDG-TVYVGTDDGHLYALNADTGTLKWTYE-TPAPLSLSIYGSPAIASG--TVYVGSDGYDGILYALNAEDGTL 221 (370)
T ss_pred ecCcEEcCc-EEEEecCCCeEEEEEccCCcEEEEEe-cCCccccccccCceeecc--eEEEecCCCcceEEEEEccCCcE
Confidence 111122233 44444477888888888887766544 11 1111111112233 4555555 66788888888887
Q ss_pred ceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCCcceeeccc
Q 017194 182 NKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSK 247 (375)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 247 (375)
....+...+....... .........+.. +..+..++.++.+...|..+++.+....
T Consensus 222 ~w~~~~~~~~~~~~~~-~~~~~~~~~v~v---------~~~~~~~~~~g~~~~l~~~~G~~~W~~~ 277 (370)
T COG1520 222 KWSQKVSQTIGRTAIS-TTPAVDGGPVYV---------DGGVYAGSYGGKLLCLDADTGELIWSFP 277 (370)
T ss_pred eeeeeeecccCccccc-ccccccCceEEE---------CCcEEEEecCCeEEEEEcCCCceEEEEe
Confidence 7775432111000000 000000111111 2233566677778888888776554443
No 493
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=85.56 E-value=13 Score=27.85 Aligned_cols=35 Identities=11% Similarity=0.035 Sum_probs=26.7
Q ss_pred ccEEEEEEeec--CCC-CcEEEEecCCCeEEEEeCCCc
Q 017194 291 AAASCVAFSMF--GER-GKYLISGGNDKLVKVWDCSRF 325 (375)
Q Consensus 291 ~~v~~~~~s~~--~~~-~~~l~s~~~dg~i~iwd~~~~ 325 (375)
..+..++|||. +++ +-+|++...++.|.||.....
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~~ 123 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPGN 123 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCCC
Confidence 37999999962 223 347888899999999987753
No 494
>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.
Probab=85.22 E-value=37 Score=32.68 Aligned_cols=77 Identities=10% Similarity=0.038 Sum_probs=52.0
Q ss_pred CccEEEEEEeecCCCCcEEEEecCCCeEEEEeCCCceeeeec----chhhhhhhhc------ccccceeeeeecCCCCCc
Q 017194 290 TAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTS----INNDLLIKNI------NLNKKVNWLCTTPTESEN 359 (375)
Q Consensus 290 ~~~v~~~~~s~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~----~~~~~~~~~~------~~~~~v~~~~~~~~~~~~ 359 (375)
...|.++... .-+.+++..-.||+|.++|..+.+..... .....+.... ..-..+..++|+| .+..
T Consensus 259 ~~~V~si~~~---~~~~~v~~~~~DGsI~~~dr~t~~~~~~~~~~~~~~~~v~s~~~~Gf~fp~~~~~~~vafSP-t~c~ 334 (753)
T PF11635_consen 259 NKRVVSITSP---ELDIVVAFAFSDGSIEFRDRNTMKELNETRTNGEPPNTVTSLFQAGFHFPCIQPPLHVAFSP-TMCS 334 (753)
T ss_pred CCeEEEEEec---ccCcEEEEEEcCCeEEEEecCcchhhcccccccCCccccccccccccccccCCCCceEEECc-ccce
Confidence 4568888776 66778999999999999999988655333 1112111111 1122456789999 7778
Q ss_pred EEEeeCCCeEE
Q 017194 360 LVVCDTSKVVK 370 (375)
Q Consensus 360 l~s~~~dg~v~ 370 (375)
++.-..+|.+.
T Consensus 335 ~v~~~~~~~~~ 345 (753)
T PF11635_consen 335 LVQIDEDGKTK 345 (753)
T ss_pred EEEEecCCCce
Confidence 88888888754
No 495
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=84.56 E-value=25 Score=30.21 Aligned_cols=196 Identities=13% Similarity=0.159 Sum_probs=105.5
Q ss_pred CCEEEEeCCCCcEEEEecccCceeeEeeecCccEEEEEEe----CCCCe--EEEEcC-C---CeEEEEECCCC-Cccccc
Q 017194 28 PGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFK----SGNED--IIYVSS-G---KEVKSFDVHMP-ASWRPL 96 (375)
Q Consensus 28 ~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~v~~l~~~----~~~~~--l~~~~~-d---~~i~iwd~~~~-~~~~~~ 96 (375)
..+++...+++-+.+||++ |+.++.+. .+.++.+..- -.|+. |+.++. + ..|++|.+... ..+..+
T Consensus 68 kSlIigTdK~~GL~VYdL~-Gk~lq~~~--~Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g~L~~v 144 (381)
T PF02333_consen 68 KSLIIGTDKKGGLYVYDLD-GKELQSLP--VGRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTGELTDV 144 (381)
T ss_dssp G-EEEEEETTTEEEEEETT-S-EEEEE---SS-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTTEEEE-
T ss_pred cceEEEEeCCCCEEEEcCC-CcEEEeec--CCCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCCcceEc
Confidence 4567777777889999987 55566664 2344444432 23433 444443 2 47999987531 112222
Q ss_pred cc----ccCCCcceeEEEE--cC-CCC-eEEEEeCCCcEEEEeCc---Cc----eeeeeEecCcccceeEEEEeeCCCcE
Q 017194 97 ES----YNYNKEEINQIVC--NP-KSS-FLACADDGGDVKIIDIR---QH----CLYKSLRAGHSSICSSVQFIPWKPWE 161 (375)
Q Consensus 97 ~~----~~~~~~~v~~~~~--~~-~~~-~l~~~~~dg~i~iwd~~---~~----~~~~~~~~~~~~~v~~~~~~~~~~~~ 161 (375)
.. +......+..+|+ ++ ++. ++++...+|.+..|.+. .+ +.++.|. -...+..+....... .
T Consensus 145 ~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~--~~sQ~EGCVVDDe~g-~ 221 (381)
T PF02333_consen 145 TDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFK--VGSQPEGCVVDDETG-R 221 (381)
T ss_dssp CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE---SS-EEEEEEETTTT-E
T ss_pred CCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEec--CCCcceEEEEecccC-C
Confidence 11 0011234566666 33 354 56667788998888775 22 4577777 345788888888777 7
Q ss_pred EEEeecCCeEEEeeCCCCC--cceEEecCCCCCCCCCCcccCCCceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCC
Q 017194 162 VISGGLDSKLVMWDFSKGR--PNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIES 239 (375)
Q Consensus 162 l~~~~~d~~i~~wd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 239 (375)
|..+-++.-|.-|+.+-.. ....+.... .. .....+-.|++-... +..+-++++.-.+++..+|+...
T Consensus 222 LYvgEE~~GIW~y~Aep~~~~~~~~v~~~~-------g~-~l~aDvEGlaly~~~--~g~gYLivSsQG~~sf~Vy~r~~ 291 (381)
T PF02333_consen 222 LYVGEEDVGIWRYDAEPEGGNDRTLVASAD-------GD-GLVADVEGLALYYGS--DGKGYLIVSSQGDNSFAVYDREG 291 (381)
T ss_dssp EEEEETTTEEEEEESSCCC-S--EEEEEBS-------SS-SB-S-EEEEEEEE-C--CC-EEEEEEEGGGTEEEEEESST
T ss_pred EEEecCccEEEEEecCCCCCCcceeeeccc-------cc-ccccCccceEEEecC--CCCeEEEEEcCCCCeEEEEecCC
Confidence 8999999888888876322 112221110 00 012456666664310 11233444444678899999885
No 496
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=84.33 E-value=7.6 Score=36.23 Aligned_cols=100 Identities=16% Similarity=0.103 Sum_probs=54.8
Q ss_pred EEEEEeCCCCeEEEEcCCC-----eEEEEECCCCCcccccccccCCCcceeEEEEcCCCCeEEEEeCCCcEEEEeCcCce
Q 017194 62 TSLCFKSGNEDIIYVSSGK-----EVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHC 136 (375)
Q Consensus 62 ~~l~~~~~~~~l~~~~~d~-----~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 136 (375)
..+.|-|+|..+++-+.|| .+.++....-+- .......+-...+..++|+-....++.+ ..+.+++|-..+-.
T Consensus 250 ~~LSWkpqgS~~ati~td~~~~S~~ViFfErNGLrH-Gef~lr~~~dEk~~~~~wn~~s~vlav~-~~n~~~lwttkNyh 327 (1243)
T COG5290 250 HQLSWKPQGSKYATIGTDGCSTSESVIFFERNGLRH-GEFDLRVGCDEKAFLENWNLLSTVLAVA-EGNLLKLWTTKNYH 327 (1243)
T ss_pred hccccccCCceeeeeccCCCCCcceEEEEccCCccc-CCccccCCchhhhhhhhhhHHHHHHHHh-hcceEEEEEccceE
Confidence 3488999999999987664 566666442111 1111111123456667776655555554 44679999765432
Q ss_pred eeeeEecCcccceeEEEEeeCCCcEEEE
Q 017194 137 LYKSLRAGHSSICSSVQFIPWKPWEVIS 164 (375)
Q Consensus 137 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~ 164 (375)
-.-... -.-..+.-+.|+|...+.+..
T Consensus 328 WYLK~e-~~ip~~s~vkwhpe~~nTl~f 354 (1243)
T COG5290 328 WYLKVE-RQIPGISYVKWHPEEKNTLLF 354 (1243)
T ss_pred EEEEEe-ecCCCcceeeeccccCcEEEE
Confidence 211111 122345567888876643333
No 497
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=84.03 E-value=29 Score=30.57 Aligned_cols=31 Identities=13% Similarity=0.320 Sum_probs=24.2
Q ss_pred CceeEEeecCCccccCCCCEEEEEecCCcEEEEeCCC
Q 017194 203 AFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIES 239 (375)
Q Consensus 203 ~~v~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 239 (375)
..|.+++..+ ..+.+++.+.+|.|.+|++..
T Consensus 190 ~~I~~v~~d~------~r~~ly~l~~~~~Iq~w~l~~ 220 (422)
T PF08801_consen 190 PKIVQVAVDP------SRRLLYTLTSDGSIQVWDLGP 220 (422)
T ss_dssp --EEEEEEET------TTTEEEEEESSE-EEEEEE-S
T ss_pred hceeeEEecC------CcCEEEEEeCCCcEEEEEEeC
Confidence 3488898887 568999999999999999974
No 498
>PLN02193 nitrile-specifier protein
Probab=83.38 E-value=34 Score=30.76 Aligned_cols=105 Identities=14% Similarity=0.165 Sum_probs=51.2
Q ss_pred CCEEEEeCCC-----CcEEEEecccCceeeEeee----cCccEEEEEEeCCCCeEEEEcCC-----CeEEEEECCCCCcc
Q 017194 28 PGFVASSGED-----GCICWFDLRSKDVQLVTDV----GNGPVTSLCFKSGNEDIIYVSSG-----KEVKSFDVHMPASW 93 (375)
Q Consensus 28 ~~~l~s~~~d-----~~i~iw~~~~~~~~~~~~~----~~~~v~~l~~~~~~~~l~~~~~d-----~~i~iwd~~~~~~~ 93 (375)
+.+.+.|+.+ ..+..+|+.+.+-...-.. ....-.++. .-+++..+.|+.+ ..+..||+.+.+ +
T Consensus 229 ~~lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~~~-~~~~~iYv~GG~~~~~~~~~~~~yd~~t~~-W 306 (470)
T PLN02193 229 STLYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEEGPTPRSFHSMA-ADEENVYVFGGVSATARLKTLDSYNIVDKK-W 306 (470)
T ss_pred CEEEEECCCCCCCCCccEEEEECCCCEEEEcCcCCCCCCCccceEEE-EECCEEEEECCCCCCCCcceEEEEECCCCE-E
Confidence 4566677654 3577888776543221110 011111222 2345566666654 356788877542 3
Q ss_pred ccccccc---CCCcceeEEEEcCCCCeEEEEeCC----CcEEEEeCcCce
Q 017194 94 RPLESYN---YNKEEINQIVCNPKSSFLACADDG----GDVKIIDIRQHC 136 (375)
Q Consensus 94 ~~~~~~~---~~~~~v~~~~~~~~~~~l~~~~~d----g~i~iwd~~~~~ 136 (375)
..+.... ...... .++. -+++.++.++.+ ..+.+||+.+.+
T Consensus 307 ~~~~~~~~~~~~R~~~-~~~~-~~gkiyviGG~~g~~~~dv~~yD~~t~~ 354 (470)
T PLN02193 307 FHCSTPGDSFSIRGGA-GLEV-VQGKVWVVYGFNGCEVDDVHYYDPVQDK 354 (470)
T ss_pred EeCCCCCCCCCCCCCc-EEEE-ECCcEEEEECCCCCccCceEEEECCCCE
Confidence 3222110 001111 1222 256676666654 458899988764
No 499
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=83.15 E-value=4.3 Score=21.20 Aligned_cols=28 Identities=25% Similarity=0.198 Sum_probs=24.3
Q ss_pred EEEEeecCCeEEEeeCCCCCcceEEecC
Q 017194 161 EVISGGLDSKLVMWDFSKGRPNKIVNFG 188 (375)
Q Consensus 161 ~l~~~~~d~~i~~wd~~~~~~~~~~~~~ 188 (375)
.++.++.+|.|.-.|.++|+.+..++..
T Consensus 2 ~v~~~~~~g~l~AlD~~TG~~~W~~~~~ 29 (38)
T PF01011_consen 2 RVYVGTPDGYLYALDAKTGKVLWKFQTG 29 (38)
T ss_dssp EEEEETTTSEEEEEETTTTSEEEEEESS
T ss_pred EEEEeCCCCEEEEEECCCCCEEEeeeCC
Confidence 3566699999999999999999998855
No 500
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=81.80 E-value=4.1 Score=20.18 Aligned_cols=24 Identities=8% Similarity=0.138 Sum_probs=19.7
Q ss_pred eEEEEeCCCcEEEEeCcCceeeee
Q 017194 117 FLACADDGGDVKIIDIRQHCLYKS 140 (375)
Q Consensus 117 ~l~~~~~dg~i~iwd~~~~~~~~~ 140 (375)
.++.++.+|.+..+|.++++.+..
T Consensus 8 ~v~~~~~~g~l~a~d~~~G~~~W~ 31 (33)
T smart00564 8 TVYVGSTDGTLYALDAKTGEILWT 31 (33)
T ss_pred EEEEEcCCCEEEEEEcccCcEEEE
Confidence 677788899999999988887654
Done!