Query 017195
Match_columns 375
No_of_seqs 265 out of 885
Neff 4.5
Searched_HMMs 29240
Date Mon Mar 25 10:29:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017195.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017195hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3dfx_A Trans-acting T-cell-spe 99.7 1.2E-17 4.2E-22 128.7 4.9 55 203-260 6-60 (63)
2 1gnf_A Transcription factor GA 99.7 1.3E-17 4.5E-22 121.2 4.3 43 204-249 4-46 (46)
3 2vut_I AREA, nitrogen regulato 99.7 1.7E-17 5.9E-22 119.0 3.4 41 205-248 2-42 (43)
4 4gat_A Nitrogen regulatory pro 99.7 2.6E-17 8.8E-22 127.9 3.9 53 204-259 9-61 (66)
5 2kae_A GATA-type transcription 99.5 1.5E-15 5.3E-20 119.5 2.5 47 204-252 8-54 (71)
6 4hc9_A Trans-acting T-cell-spe 99.5 1E-14 3.6E-19 124.1 4.6 54 204-260 59-112 (115)
7 4hc9_A Trans-acting T-cell-spe 99.4 3.5E-13 1.2E-17 114.7 5.5 49 204-255 5-53 (115)
8 3ogk_Q JAZ1 incomplete degron 97.7 6.8E-06 2.3E-10 51.1 1.0 22 138-160 1-22 (22)
9 3ogl_Q JAZ1 incomplete degron 97.4 7.7E-05 2.6E-09 45.8 2.0 18 136-153 4-21 (21)
10 2yrk_A Zinc finger homeobox pr 53.4 0.63 2.1E-05 34.8 -3.5 25 222-246 7-31 (55)
11 2owa_A Arfgap-like finger doma 42.4 17 0.00058 31.4 3.2 37 204-244 36-72 (138)
12 1pft_A TFIIB, PFTFIIBN; N-term 42.0 3.7 0.00013 28.9 -0.8 33 204-241 5-37 (50)
13 1dl6_A Transcription factor II 41.7 8.1 0.00028 28.5 0.9 34 204-242 11-44 (58)
14 2iqj_A Stromal membrane-associ 41.4 15 0.00053 31.4 2.8 37 204-244 27-63 (134)
15 2jrb_A ORF 1 protein; RNA bind 39.5 20 0.00068 29.0 3.0 25 74-100 46-70 (88)
16 2crr_A Stromal membrane-associ 39.0 20 0.0007 30.9 3.2 37 204-244 29-65 (141)
17 3cw2_K Translation initiation 38.0 11 0.00036 32.8 1.2 31 204-237 103-133 (139)
18 2crw_A ARF GAP 3, ADP-ribosyla 37.4 20 0.00068 31.4 2.9 37 204-244 29-65 (149)
19 2ds5_A CLPX, ATP-dependent CLP 35.7 17 0.00059 26.4 1.9 31 205-237 12-42 (51)
20 2olm_A Nucleoporin-like protei 35.3 20 0.0007 30.9 2.6 36 204-243 25-60 (140)
21 3sub_A ADP-ribosylation factor 35.2 24 0.00083 31.4 3.1 37 204-244 22-58 (163)
22 2d74_B Translation initiation 34.8 11 0.00038 33.0 0.9 30 205-237 105-134 (148)
23 1ovx_A ATP-dependent CLP prote 34.5 17 0.00059 28.0 1.8 33 204-238 18-50 (67)
24 1nee_A EIF-2-beta, probable tr 32.9 11 0.00038 32.6 0.6 29 205-236 103-131 (138)
25 3cng_A Nudix hydrolase; struct 32.1 13 0.00044 31.9 0.8 31 204-236 3-33 (189)
26 3dwd_A ADP-ribosylation factor 30.8 28 0.00096 30.5 2.7 37 204-244 38-74 (147)
27 2p57_A GTPase-activating prote 30.5 24 0.00082 30.8 2.3 37 204-244 37-73 (144)
28 1k81_A EIF-2-beta, probable tr 30.3 6.9 0.00023 26.4 -1.0 28 206-237 2-30 (36)
29 3soo_A LINE-1 type transposase 29.9 39 0.0013 27.3 3.2 27 72-100 44-70 (88)
30 3o47_A ADP-ribosylation factor 29.7 22 0.00075 33.5 2.0 37 204-244 37-73 (329)
31 2b0o_E UPLC1; arfgap, structur 29.5 30 0.001 31.9 2.9 37 204-244 42-78 (301)
32 2ctu_A Zinc finger protein 483 28.5 20 0.00069 24.6 1.2 40 204-246 18-57 (73)
33 2zjr_Z 50S ribosomal protein L 26.6 11 0.00038 28.2 -0.5 23 204-237 30-52 (60)
34 3h0g_L DNA-directed RNA polyme 25.6 14 0.00048 28.1 -0.1 41 195-242 12-52 (63)
35 3k7a_M Transcription initiatio 25.1 19 0.00064 34.7 0.7 34 204-241 21-55 (345)
36 2lma_A THP5 peptide; CD4+, imm 23.2 13 0.00045 23.3 -0.5 19 11-29 1-19 (26)
37 2lvu_A Zinc finger and BTB dom 28.6 18 0.00061 19.9 0.0 17 229-245 3-19 (26)
38 1qyp_A RNA polymerase II; tran 22.1 6.9 0.00024 28.3 -2.4 37 204-240 15-55 (57)
39 3v2d_5 50S ribosomal protein L 21.9 14 0.00047 27.7 -0.8 21 204-235 30-50 (60)
40 2g2k_A EIF-5, eukaryotic trans 20.6 17 0.00059 32.6 -0.6 31 205-237 97-128 (170)
No 1
>3dfx_A Trans-acting T-cell-specific transcription factor GATA-3; activator, DNA-binding, metal-binding, nucleus; HET: DNA; 2.70A {Mus musculus} PDB: 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A*
Probab=99.69 E-value=1.2e-17 Score=128.70 Aligned_cols=55 Identities=29% Similarity=0.531 Sum_probs=47.6
Q ss_pred cccccccccccccCCCccccCCCCCcccchHHHHHHHhcCCCCCCccCcCCccccccc
Q 017195 203 VSRICQHCGISEKLTPAMRRGPAGPRTLCNACGLMWANKGTLRDLTKGARNICFEQHE 260 (375)
Q Consensus 203 ~~~~C~~Cg~t~~~TP~WRrGP~G~~tLCNACGl~~~~~~~~r~~~~~~~~i~~~q~~ 260 (375)
....|+||+++ .||+||+||+|+ +|||||||+|++++++|++...+..|....+.
T Consensus 6 ~~~~C~~C~tt--~Tp~WR~gp~G~-~LCNACGl~~~~~~~~RP~~~~~~~i~~R~Rk 60 (63)
T 3dfx_A 6 AGTSCANCQTT--TTTLWRRNANGD-PVCNACGLYYKLHNINRPLTMKKEGIQTRNRK 60 (63)
T ss_dssp TTCCCTTTCCS--CCSSCCCCTTSC-CCCHHHHHHHHHHSSCCCGGGCCSSCCCCC--
T ss_pred CCCcCCCcCCC--CCCccCCCCCCC-chhhHHHHHHHHcCCCCCcCcCCCccccccCC
Confidence 36799999998 799999999997 99999999999999999999887767655543
No 2
>1gnf_A Transcription factor GATA-1; zinc finger, transcription regulation; NMR {Mus musculus} SCOP: g.39.1.1 PDB: 1y0j_A 2l6y_A 2l6z_A
Probab=99.69 E-value=1.3e-17 Score=121.20 Aligned_cols=43 Identities=44% Similarity=0.832 Sum_probs=40.3
Q ss_pred ccccccccccccCCCccccCCCCCcccchHHHHHHHhcCCCCCCcc
Q 017195 204 SRICQHCGISEKLTPAMRRGPAGPRTLCNACGLMWANKGTLRDLTK 249 (375)
Q Consensus 204 ~~~C~~Cg~t~~~TP~WRrGP~G~~tLCNACGl~~~~~~~~r~~~~ 249 (375)
...|++|+++ .||+||+||+|+ +|||||||||++++++|+++|
T Consensus 4 ~~~C~~C~tt--~Tp~WR~gp~G~-~LCNaCGl~~k~~~~~RP~~~ 46 (46)
T 1gnf_A 4 ARECVNCGAT--ATPLWRRDRTGH-YLCNACGLYHKMNGQNRPLIR 46 (46)
T ss_dssp SCCCTTTCCC--CCSSCBCCTTCC-CBCSHHHHHHHHTCSCCCCCC
T ss_pred CCCCCCcCCC--CCCcCccCCCCC-ccchHHHHHHHHcCCCCCCCC
Confidence 5789999998 799999999996 999999999999999999875
No 3
>2vut_I AREA, nitrogen regulatory protein AREA; transcription regulation, protein-protein interactions, metal-binding, nitrate assimilation; HET: NAD; 2.3A {Emericella nidulans} SCOP: g.39.1.1 PDB: 2vus_I* 2vuu_I*
Probab=99.67 E-value=1.7e-17 Score=119.02 Aligned_cols=41 Identities=44% Similarity=0.878 Sum_probs=38.6
Q ss_pred cccccccccccCCCccccCCCCCcccchHHHHHHHhcCCCCCCc
Q 017195 205 RICQHCGISEKLTPAMRRGPAGPRTLCNACGLMWANKGTLRDLT 248 (375)
Q Consensus 205 ~~C~~Cg~t~~~TP~WRrGP~G~~tLCNACGl~~~~~~~~r~~~ 248 (375)
..|++|+++ .||+||+||+|+ +|||||||+|++++++|+++
T Consensus 2 ~~C~~C~tt--~Tp~WR~gp~G~-~LCNaCGl~~k~~~~~RP~~ 42 (43)
T 2vut_I 2 TTCTNCFTQ--TTPLWRRNPEGQ-PLCNACGLFLKLHGVVRPLS 42 (43)
T ss_dssp CCCSSSCCC--CCSCCEECTTSC-EECHHHHHHHHHHSSCCCCC
T ss_pred CcCCccCCC--CCCccccCCCCC-cccHHHHHHHHHhCCCCCCC
Confidence 579999998 799999999997 99999999999999999975
No 4
>4gat_A Nitrogen regulatory protein AREA; DNA binding protein, transcription factor, zinc binding domain, complex (transcription regulation/DNA); HET: DNA; NMR {Emericella nidulans} SCOP: g.39.1.1 PDB: 5gat_A* 6gat_A* 7gat_A*
Probab=99.66 E-value=2.6e-17 Score=127.94 Aligned_cols=53 Identities=36% Similarity=0.648 Sum_probs=47.2
Q ss_pred ccccccccccccCCCccccCCCCCcccchHHHHHHHhcCCCCCCccCcCCcccccc
Q 017195 204 SRICQHCGISEKLTPAMRRGPAGPRTLCNACGLMWANKGTLRDLTKGARNICFEQH 259 (375)
Q Consensus 204 ~~~C~~Cg~t~~~TP~WRrGP~G~~tLCNACGl~~~~~~~~r~~~~~~~~i~~~q~ 259 (375)
...|+||+++ .||+||+||+|. +|||||||||++++++|+++.....|....+
T Consensus 9 ~~~C~~C~t~--~Tp~WR~gp~G~-~LCNaCGl~~~~~~~~RP~~~k~~~ik~R~R 61 (66)
T 4gat_A 9 PTTCTNCFTQ--TTPLWRRNPEGQ-PLCNACGLFLKLHGVVRPLSLKTDVIKKRNR 61 (66)
T ss_dssp SCCCTTTCCC--CCSSCEEETTTE-EECHHHHHHHHHHCSCCCGGGCCSCCCCCCC
T ss_pred CCCCCCCCCC--CCCcCCcCCCCC-CccHHHHHHHHHcCCCCchhhcccccccccc
Confidence 6899999998 799999999996 9999999999999999999988766655443
No 5
>2kae_A GATA-type transcription factor; zinc finger, GATA-type, DNA; NMR {Caenorhabditis elegans}
Probab=99.54 E-value=1.5e-15 Score=119.48 Aligned_cols=47 Identities=23% Similarity=0.328 Sum_probs=40.6
Q ss_pred ccccccccccccCCCccccCCCCCcccchHHHHHHHhcCCCCCCccCcC
Q 017195 204 SRICQHCGISEKLTPAMRRGPAGPRTLCNACGLMWANKGTLRDLTKGAR 252 (375)
Q Consensus 204 ~~~C~~Cg~t~~~TP~WRrGP~G~~tLCNACGl~~~~~~~~r~~~~~~~ 252 (375)
...|+||+++ .||+||+||.+..+|||||||||++++++|++.....
T Consensus 8 ~~~C~nC~tt--~Tp~WRrg~~~~g~LCNACGl~~~~~~~~RP~~~~~~ 54 (71)
T 2kae_A 8 SFQCSNCSVT--ETIRWRNIRSKEGIQCNACFIYQRKYNKTRPVTAVNK 54 (71)
T ss_dssp CCCCSSSCCS--CCSSCCCCSSSSCCCSSHHHHHHHHHHSCCCTHHHHH
T ss_pred CCcCCccCCC--CCCccccCCCCCCccchHHHHHHHHhCCCCCcccchh
Confidence 6899999998 7999999554445999999999999999999877643
No 6
>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A
Probab=99.49 E-value=1e-14 Score=124.07 Aligned_cols=54 Identities=30% Similarity=0.543 Sum_probs=47.7
Q ss_pred ccccccccccccCCCccccCCCCCcccchHHHHHHHhcCCCCCCccCcCCccccccc
Q 017195 204 SRICQHCGISEKLTPAMRRGPAGPRTLCNACGLMWANKGTLRDLTKGARNICFEQHE 260 (375)
Q Consensus 204 ~~~C~~Cg~t~~~TP~WRrGP~G~~tLCNACGl~~~~~~~~r~~~~~~~~i~~~q~~ 260 (375)
...|+||+++ .||+||+||+| .+|||||||||++++++|+++.....|....+.
T Consensus 59 ~~~C~~C~t~--~tp~WRr~~~g-~~lCNaCgl~~~~~~~~rp~~~~~~~i~~r~r~ 112 (115)
T 4hc9_A 59 GTSCANCQTT--TTTLWRRNANG-DPVCNACGLYYKLHNINRPLTMKKEGIQTRNRK 112 (115)
T ss_dssp TCCCTTTCCS--CCSSCEECTTS-CEECHHHHHHHHHHSSCCCGGGCCSSCCCCC--
T ss_pred cccCCCcCCC--CcceeEECCCC-CCcchHHHHHHHHhCCCCCccccccchhhcccc
Confidence 5899999998 69999999999 899999999999999999999987777665554
No 7
>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A
Probab=99.37 E-value=3.5e-13 Score=114.69 Aligned_cols=49 Identities=43% Similarity=0.769 Sum_probs=43.1
Q ss_pred ccccccccccccCCCccccCCCCCcccchHHHHHHHhcCCCCCCccCcCCcc
Q 017195 204 SRICQHCGISEKLTPAMRRGPAGPRTLCNACGLMWANKGTLRDLTKGARNIC 255 (375)
Q Consensus 204 ~~~C~~Cg~t~~~TP~WRrGP~G~~tLCNACGl~~~~~~~~r~~~~~~~~i~ 255 (375)
.+.|.|||++ .||+||+||+| .+|||||||||+.++.+|++.+.++...
T Consensus 5 ~~~C~~Cg~~--~Tp~WRr~~~g-~~lCnaCgl~~Kl~G~nRP~~KpKKR~~ 53 (115)
T 4hc9_A 5 GRECVNCGAT--STPLWRRDGTG-HYLCNACGLYHKMNGQNRPLIKPKRRLS 53 (115)
T ss_dssp -CCCTTTCCS--CCSSCEECTTS-CEECHHHHHHHHHHSSCCCCSSCCCCCC
T ss_pred CCCCCCCCCc--cCCcceECCCC-CCcCcchhhhhhhccccccccccccccc
Confidence 6899999998 79999999999 7999999999999999999877655443
No 8
>3ogk_Q JAZ1 incomplete degron peptide; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana}
Probab=97.74 E-value=6.8e-06 Score=51.11 Aligned_cols=22 Identities=59% Similarity=0.709 Sum_probs=19.7
Q ss_pred HHHHHHHHHHhhccccCccceee....
Q 017195 138 RIASLVRFREKRKERSFEKKIRY.... 160 (375)
Q Consensus 138 R~aSL~RfreKRk~R~~~KkirY.... 160 (375)
|++||+||+||||+|...+ .+|
T Consensus 1 Rk~SLqRFleKRk~R~~~~-~PY.... 22 (22)
T 3ogk_Q 1 RRASLHRFLEKRKDRVTSK-APYxxxx 26 (26)
T ss_pred CchhHHHHHHHHHHHhhcc-CCC....
Confidence 6899999999999998887 676
No 9
>3ogl_Q JAZ1 incomplete degron peptide; leucine-rich repeats, ubiquitin ligase, SCF, protein binding; HET: 7JA; 3.18A {Arabidopsis thaliana} PDB: 3ogm_Q*
Probab=97.36 E-value=7.7e-05 Score=45.82 Aligned_cols=18 Identities=61% Similarity=0.695 Sum_probs=16.2
Q ss_pred hHHHHHHHHHHHhhcccc.....
Q 017195 136 SQRIASLVRFREKRKERS..... 153 (375)
Q Consensus 136 s~R~aSL~RfreKRk~R~..... 153 (375)
.+|++||+||+||||+|.
T Consensus 4 ~aRk~SLqRFleKRk~R~..... 21 (21)
T 3ogl_Q 4 IARRASLHRFLEKRKDRVxxxxx 26 (26)
T ss_pred hhHHHHHHHHHHHhhccC.....
Confidence 379999999999999984
No 10
>2yrk_A Zinc finger homeobox protein 4; structure genomics, ZF-C2H2 domain, ZFH-4, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.37.1.4
Probab=53.42 E-value=0.63 Score=34.80 Aligned_cols=25 Identities=28% Similarity=0.777 Sum_probs=20.0
Q ss_pred cCCCCCcccchHHHHHHHhcCCCCC
Q 017195 222 RGPAGPRTLCNACGLMWANKGTLRD 246 (375)
Q Consensus 222 rGP~G~~tLCNACGl~~~~~~~~r~ 246 (375)
.||+||++-|.-||..|.-+-.+++
T Consensus 7 ~~~~~P~~eC~lC~vkYs~r~slqD 31 (55)
T 2yrk_A 7 GGTDGTKPECTLCGVKYSARLSIRD 31 (55)
T ss_dssp CCCCCCCSCCTTTTCCCCSSSCHHH
T ss_pred CCCCCCCccccccCcccccccchhh
Confidence 5788988999999998877766655
No 11
>2owa_A Arfgap-like finger domain containing protein; zinc finger protein, cysteine-rich motif, GTPase activation; 2.00A {Cryptosporidium parvum iowa II}
Probab=42.37 E-value=17 Score=31.39 Aligned_cols=37 Identities=19% Similarity=0.351 Sum_probs=32.4
Q ss_pred ccccccccccccCCCccccCCCCCcccchHHHHHHHhcCCC
Q 017195 204 SRICQHCGISEKLTPAMRRGPAGPRTLCNACGLMWANKGTL 244 (375)
Q Consensus 204 ~~~C~~Cg~t~~~TP~WRrGP~G~~tLCNACGl~~~~~~~~ 244 (375)
...|..||.. -|.|=.=.-| ..||-.|.-..+.-|++
T Consensus 36 N~~CaDCga~---~P~WaS~n~G-vfiC~~CsgiHR~LG~h 72 (138)
T 2owa_A 36 NRTCFDCESR---NPTWLSLSFA-VFICLNCSSDHRKMGVH 72 (138)
T ss_dssp GGBCTTTCCB---SCCEEETTTT-EEECHHHHHHHHTTCTT
T ss_pred CCcCCCCcCC---CCCeEEecCC-EEEhHhhhHHHhCCCCC
Confidence 6899999986 6999998999 89999999888887764
No 12
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=42.02 E-value=3.7 Score=28.88 Aligned_cols=33 Identities=18% Similarity=0.613 Sum_probs=21.7
Q ss_pred ccccccccccccCCCccccCCCCCcccchHHHHHHHhc
Q 017195 204 SRICQHCGISEKLTPAMRRGPAGPRTLCNACGLMWANK 241 (375)
Q Consensus 204 ~~~C~~Cg~t~~~TP~WRrGP~G~~tLCNACGl~~~~~ 241 (375)
...|.+|+. +++-..--.| ...|..||+-|..+
T Consensus 5 ~~~CP~C~~----~~l~~d~~~g-elvC~~CG~v~~e~ 37 (50)
T 1pft_A 5 QKVCPACES----AELIYDPERG-EIVCAKCGYVIEEN 37 (50)
T ss_dssp CCSCTTTSC----CCEEEETTTT-EEEESSSCCBCCCC
T ss_pred cEeCcCCCC----cceEEcCCCC-eEECcccCCccccc
Confidence 467999975 3343333344 78999999887644
No 13
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=41.67 E-value=8.1 Score=28.48 Aligned_cols=34 Identities=21% Similarity=0.406 Sum_probs=24.8
Q ss_pred ccccccccccccCCCccccCCCCCcccchHHHHHHHhcC
Q 017195 204 SRICQHCGISEKLTPAMRRGPAGPRTLCNACGLMWANKG 242 (375)
Q Consensus 204 ~~~C~~Cg~t~~~TP~WRrGP~G~~tLCNACGl~~~~~~ 242 (375)
...|..|+. ++.....-.| .+.|..||+-+..+.
T Consensus 11 ~~~Cp~C~~----~~lv~D~~~g-e~vC~~CGlVl~e~~ 44 (58)
T 1dl6_A 11 RVTCPNHPD----AILVEDYRAG-DMICPECGLVVGDRV 44 (58)
T ss_dssp CCSBTTBSS----SCCEECSSSC-CEECTTTCCEECCSC
T ss_pred cccCcCCCC----CceeEeCCCC-eEEeCCCCCEEeccc
Confidence 457999985 3455555566 799999999887543
No 14
>2iqj_A Stromal membrane-associated protein 1-like; zinc, structural genomics, structural genomics consortium, SGC, protein transport; 1.90A {Homo sapiens}
Probab=41.40 E-value=15 Score=31.40 Aligned_cols=37 Identities=22% Similarity=0.468 Sum_probs=32.4
Q ss_pred ccccccccccccCCCccccCCCCCcccchHHHHHHHhcCCC
Q 017195 204 SRICQHCGISEKLTPAMRRGPAGPRTLCNACGLMWANKGTL 244 (375)
Q Consensus 204 ~~~C~~Cg~t~~~TP~WRrGP~G~~tLCNACGl~~~~~~~~ 244 (375)
...|..||.. -|.|=.=.-| ..||-.|.-..+.-|++
T Consensus 27 N~~CaDCg~~---~P~WaS~n~G-vfiC~~CsgiHR~lG~h 63 (134)
T 2iqj_A 27 NKFCADCQSK---GPRWASWNIG-VFICIRCAGIHRNLGVH 63 (134)
T ss_dssp GGBCTTTCCB---SCCEEETTTT-EEECHHHHHHHHHHCTT
T ss_pred CCcCCcCcCC---CCCeEEecCC-EEEhHhhhHHHhcCCCC
Confidence 6899999986 6999998999 89999999888887764
No 15
>2jrb_A ORF 1 protein; RNA binding protein; NMR {Mus musculus}
Probab=39.53 E-value=20 Score=29.02 Aligned_cols=25 Identities=28% Similarity=0.493 Sum_probs=20.2
Q ss_pred CccceEEEcceEEEeCCCChHHHHHHH
Q 017195 74 TSELTVAYEGEVYVFPAVTPHKVQALL 100 (375)
Q Consensus 74 t~QLTIfY~G~V~VFD~Vp~eKaqaIm 100 (375)
.+-|++.|+|++..|++ .+|+++.+
T Consensus 46 PakLsf~~eGeiksF~d--kqkl~efi 70 (88)
T 2jrb_A 46 PAKLSITIDGETKVFHD--KTKFTQYL 70 (88)
T ss_dssp TTEEEEESSSCEEEESS--HHHHHHHH
T ss_pred ceeeEEEECCeEeccCC--HHHHHHHH
Confidence 56899999999999997 66666544
No 16
>2crr_A Stromal membrane-associated protein SMAP1B; arfgap domain, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=39.03 E-value=20 Score=30.90 Aligned_cols=37 Identities=22% Similarity=0.464 Sum_probs=32.0
Q ss_pred ccccccccccccCCCccccCCCCCcccchHHHHHHHhcCCC
Q 017195 204 SRICQHCGISEKLTPAMRRGPAGPRTLCNACGLMWANKGTL 244 (375)
Q Consensus 204 ~~~C~~Cg~t~~~TP~WRrGP~G~~tLCNACGl~~~~~~~~ 244 (375)
...|..||.. -|.|=.=.-| ..||-.|.-..+.-|++
T Consensus 29 N~~CaDCga~---~P~WaS~n~G-vfiC~~CsgiHR~LG~h 65 (141)
T 2crr_A 29 NKYCADCEAK---GPRWASWNIG-VFICIRCAGIHRNLGVH 65 (141)
T ss_dssp GSSCSSSCCS---SCCSEETTTT-EECCHHHHHHHHHHCTT
T ss_pred CCcCCCCCCC---CCCeEEeccC-eEEhhhhhHhHhcCCCC
Confidence 6899999986 7999998899 89999999888887753
No 17
>3cw2_K Translation initiation factor 2 subunit beta; AIF2, intact AIF2, initiation factor 2 alpha subunit, initiation factor 2 beta subunit; 2.80A {Sulfolobus solfataricus} PDB: 2nxu_A 2qmu_C* 3v11_C*
Probab=38.05 E-value=11 Score=32.76 Aligned_cols=31 Identities=23% Similarity=0.300 Sum_probs=20.2
Q ss_pred ccccccccccccCCCccccCCCCCcccchHHHHH
Q 017195 204 SRICQHCGISEKLTPAMRRGPAGPRTLCNACGLM 237 (375)
Q Consensus 204 ~~~C~~Cg~t~~~TP~WRrGP~G~~tLCNACGl~ 237 (375)
--.|..|+.. .|-+-+.+ .---.-|+|||-.
T Consensus 103 yVlC~~C~sP--dT~l~k~~-r~~~l~C~ACGa~ 133 (139)
T 3cw2_K 103 YVECSTCKSL--DTILKKEK-KSWYIVCLACGAQ 133 (139)
T ss_dssp CSSCCSSSSS--CCCSCSSC-STTTSSCCC----
T ss_pred eeECCCCCCc--CcEEEEeC-CeEEEEecCCCCC
Confidence 3689999998 58888864 2224789999965
No 18
>2crw_A ARF GAP 3, ADP-ribosylation factor GTPase-activating protein 3; arfgap domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=37.42 E-value=20 Score=31.39 Aligned_cols=37 Identities=24% Similarity=0.516 Sum_probs=32.4
Q ss_pred ccccccccccccCCCccccCCCCCcccchHHHHHHHhcCCC
Q 017195 204 SRICQHCGISEKLTPAMRRGPAGPRTLCNACGLMWANKGTL 244 (375)
Q Consensus 204 ~~~C~~Cg~t~~~TP~WRrGP~G~~tLCNACGl~~~~~~~~ 244 (375)
...|..||.. -|.|=.=.-| ..||-.|.-..+.-|++
T Consensus 29 N~~CaDCga~---~P~WaS~n~G-vfiC~~CsgiHR~LG~h 65 (149)
T 2crw_A 29 NKVCFDCGAK---NPSWASITYG-VFLCIDCSGSHRSLGVH 65 (149)
T ss_dssp TSBCSSSCCB---SCCCEETTTT-EECCHHHHHHHHHHCTT
T ss_pred CCcCCCCcCC---CCCcEEeccC-EEEchhcchhhccCCCC
Confidence 6899999986 7999998899 89999999888887764
No 19
>2ds5_A CLPX, ATP-dependent CLP protease ATP-binding subunit CLPX; treble cleft zinc finger, metal binding protein, protein binding; HET: PG4; 1.50A {Escherichia coli} SCOP: g.39.1.11 PDB: 2ds6_A 2ds8_A 2ds7_A
Probab=35.67 E-value=17 Score=26.39 Aligned_cols=31 Identities=26% Similarity=0.636 Sum_probs=22.3
Q ss_pred cccccccccccCCCccccCCCCCcccchHHHHH
Q 017195 205 RICQHCGISEKLTPAMRRGPAGPRTLCNACGLM 237 (375)
Q Consensus 205 ~~C~~Cg~t~~~TP~WRrGP~G~~tLCNACGl~ 237 (375)
.+|+-||.+.......=.|| | ...|+-|=..
T Consensus 12 ~~CSFCGk~~~ev~~LIaGp-g-v~IC~eCi~~ 42 (51)
T 2ds5_A 12 LYCSFCGKSQHEVRKLIAGP-S-VYICDECVDL 42 (51)
T ss_dssp CBCTTTCCBTTTSSCEEECS-S-CEEEHHHHHH
T ss_pred cEecCCCCCHHHhcccCCCC-C-CEehHHHHHH
Confidence 58999999854455555566 3 5799999644
No 20
>2olm_A Nucleoporin-like protein RIP; arfgap, GTPase-activating protein, REV-interacting protein, human immunodeficiency virus, AIDS, structural genomics; 1.48A {Homo sapiens} PDB: 2d9l_A
Probab=35.28 E-value=20 Score=30.86 Aligned_cols=36 Identities=19% Similarity=0.435 Sum_probs=31.2
Q ss_pred ccccccccccccCCCccccCCCCCcccchHHHHHHHhcCC
Q 017195 204 SRICQHCGISEKLTPAMRRGPAGPRTLCNACGLMWANKGT 243 (375)
Q Consensus 204 ~~~C~~Cg~t~~~TP~WRrGP~G~~tLCNACGl~~~~~~~ 243 (375)
...|..||.. -|.|=.=.-| ..||-.|.-..+.-|+
T Consensus 25 N~~CaDCg~~---~P~WaS~n~G-vfiC~~CsgiHR~LG~ 60 (140)
T 2olm_A 25 NRKCFDCDQR---GPTYVNMTVG-SFVCTSCSGSLRGLNP 60 (140)
T ss_dssp GGSCTTTCSS---CCCEEETTTT-EEECHHHHHHHTTSSS
T ss_pred CCcCCCCCCC---CCCceeeccC-EEEchhccchhccCCC
Confidence 6899999986 7999998899 8999999888777665
No 21
>3sub_A ADP-ribosylation factor GTPase-activating protein; protein trafficking, hydrolase AC; 2.40A {Plasmodium falciparum 3D7}
Probab=35.15 E-value=24 Score=31.45 Aligned_cols=37 Identities=30% Similarity=0.522 Sum_probs=32.0
Q ss_pred ccccccccccccCCCccccCCCCCcccchHHHHHHHhcCCC
Q 017195 204 SRICQHCGISEKLTPAMRRGPAGPRTLCNACGLMWANKGTL 244 (375)
Q Consensus 204 ~~~C~~Cg~t~~~TP~WRrGP~G~~tLCNACGl~~~~~~~~ 244 (375)
...|..||.. -|.|=.=.-| ..||-.|.-..+.-|++
T Consensus 22 N~~CaDCga~---~P~WaS~nlG-vflCi~CSGiHR~LG~h 58 (163)
T 3sub_A 22 NNKCFDCGIS---NPDWVSVNHG-IFLCINCSGVHRSLGVH 58 (163)
T ss_dssp GGBCTTTCCB---SCCEEETTTT-EEECHHHHHHHHHTCTT
T ss_pred CCccccCCCC---CCCeEEecCC-eeEHHhhhHHhcCCCCC
Confidence 6899999986 7999998899 89999998888776654
No 22
>2d74_B Translation initiation factor 2 beta subunit; protein complex; 2.80A {Pyrococcus furiosus} PDB: 2dcu_B*
Probab=34.75 E-value=11 Score=32.99 Aligned_cols=30 Identities=33% Similarity=0.567 Sum_probs=21.4
Q ss_pred cccccccccccCCCccccCCCCCcccchHHHHH
Q 017195 205 RICQHCGISEKLTPAMRRGPAGPRTLCNACGLM 237 (375)
Q Consensus 205 ~~C~~Cg~t~~~TP~WRrGP~G~~tLCNACGl~ 237 (375)
-.|..|+.. .|-+-+.+- ---.-|+|||-.
T Consensus 105 VlC~~C~sP--dT~L~k~~r-~~~l~C~ACGa~ 134 (148)
T 2d74_B 105 VICPVCGSP--DTKIIKRDR-FHFLKCEACGAE 134 (148)
T ss_dssp SSCSSSCCT--TCCCCBSSS-SBCCCCSSSCCC
T ss_pred EECCCCCCc--CcEEEEeCC-EEEEEecCCCCC
Confidence 579999988 577777542 224679999853
No 23
>1ovx_A ATP-dependent CLP protease ATP-binding subunit CL; treble CLEF zinc finger, homodimer, metal binding protein; NMR {Escherichia coli} SCOP: g.39.1.11
Probab=34.50 E-value=17 Score=28.01 Aligned_cols=33 Identities=24% Similarity=0.566 Sum_probs=23.3
Q ss_pred ccccccccccccCCCccccCCCCCcccchHHHHHH
Q 017195 204 SRICQHCGISEKLTPAMRRGPAGPRTLCNACGLMW 238 (375)
Q Consensus 204 ~~~C~~Cg~t~~~TP~WRrGP~G~~tLCNACGl~~ 238 (375)
..+|+-||.+.......=.|| | ..+||-|=...
T Consensus 18 ~~~CSFCGK~e~eV~~LIaGp-g-vyICdeCI~~c 50 (67)
T 1ovx_A 18 LLYCSFCGKSQHEVRKLIAGP-S-VYICDECVDLC 50 (67)
T ss_dssp CCCCTTTCCCTTTSSSEEECS-S-CEEEHHHHHHH
T ss_pred CcEecCCCCCHHHHcccCCCC-C-CChhHHHHHHH
Confidence 358999999754455555566 3 58999996544
No 24
>1nee_A EIF-2-beta, probable translation initiation factor 2 beta subunit; two domain protein, mixed alpha-beta structure; NMR {Methanothermobacterthermautotrophicus} SCOP: d.241.1.1 g.59.1.1
Probab=32.86 E-value=11 Score=32.57 Aligned_cols=29 Identities=34% Similarity=0.660 Sum_probs=21.0
Q ss_pred cccccccccccCCCccccCCCCCcccchHHHH
Q 017195 205 RICQHCGISEKLTPAMRRGPAGPRTLCNACGL 236 (375)
Q Consensus 205 ~~C~~Cg~t~~~TP~WRrGP~G~~tLCNACGl 236 (375)
-.|..|+.. .|-+-+.+ .---.-|+|||-
T Consensus 103 VlC~~C~sP--dT~l~k~~-r~~~l~C~ACGa 131 (138)
T 1nee_A 103 VICHECNRP--DTRIIREG-RISLLKCEACGA 131 (138)
T ss_dssp HHHTCCSSC--SSCCEEET-TTTEEECSTTSC
T ss_pred EECCCCCCc--CcEEEEcC-CeEEEEccCCCC
Confidence 579999988 58888764 222467999984
No 25
>3cng_A Nudix hydrolase; structural genomics, APC7497, PSI-2, protei structure initiative; 2.00A {Nitrosomonas europaea atcc 19718}
Probab=32.10 E-value=13 Score=31.92 Aligned_cols=31 Identities=26% Similarity=0.684 Sum_probs=24.0
Q ss_pred ccccccccccccCCCccccCCCCCcccchHHHH
Q 017195 204 SRICQHCGISEKLTPAMRRGPAGPRTLCNACGL 236 (375)
Q Consensus 204 ~~~C~~Cg~t~~~TP~WRrGP~G~~tLCNACGl 236 (375)
.+.|..||.. .+.....|..+.+..|-.||.
T Consensus 3 ~~~C~~CG~~--~~~~~~~G~~~~~~~~~~~~~ 33 (189)
T 3cng_A 3 MKFCSQCGGE--VILRIPEGDTLPRYICPKCHT 33 (189)
T ss_dssp CCBCTTTCCB--CEEECCTTCSSCEEEETTTTE
T ss_pred cccCchhCCc--cccccccCCCCcceECCCCCC
Confidence 5789999986 455555677777789999994
No 26
>3dwd_A ADP-ribosylation factor GTPase-activating protein; GAP, structural genomics consorti ER-golgi transport, golgi apparatus, GTPase activation; 2.40A {Homo sapiens}
Probab=30.76 E-value=28 Score=30.53 Aligned_cols=37 Identities=22% Similarity=0.423 Sum_probs=32.1
Q ss_pred ccccccccccccCCCccccCCCCCcccchHHHHHHHhcCCC
Q 017195 204 SRICQHCGISEKLTPAMRRGPAGPRTLCNACGLMWANKGTL 244 (375)
Q Consensus 204 ~~~C~~Cg~t~~~TP~WRrGP~G~~tLCNACGl~~~~~~~~ 244 (375)
...|..||.. -|.|=.=.-| ..||-.|.-..+.-|.+
T Consensus 38 N~~CaDCga~---~P~WaS~nlG-vfiC~~CSgiHR~LG~h 74 (147)
T 3dwd_A 38 NNVCFECGAF---NPQWVSVTYG-IWICLECSGRHRGLGVH 74 (147)
T ss_dssp TTBCTTTCCB---SCCEEETTTT-EEECHHHHHHHHHHCTT
T ss_pred CCccCCCCCC---CCCeEEeccc-EeEhHhhChHHhcCCCC
Confidence 5799999986 7999998899 89999999888876653
No 27
>2p57_A GTPase-activating protein ZNF289; zinc finger, GAP, structural genomics, structural genomics consortium, SGC, metal binding protein; 1.80A {Homo sapiens}
Probab=30.50 E-value=24 Score=30.79 Aligned_cols=37 Identities=24% Similarity=0.508 Sum_probs=32.1
Q ss_pred ccccccccccccCCCccccCCCCCcccchHHHHHHHhcCCC
Q 017195 204 SRICQHCGISEKLTPAMRRGPAGPRTLCNACGLMWANKGTL 244 (375)
Q Consensus 204 ~~~C~~Cg~t~~~TP~WRrGP~G~~tLCNACGl~~~~~~~~ 244 (375)
...|..||.. -|.|=.=.-| ..+|-.|.-..+.-|++
T Consensus 37 N~~CaDCga~---~P~WaS~n~G-vfiC~~CsgiHR~LG~h 73 (144)
T 2p57_A 37 NKACFDCGAK---NPSWASITYG-VFLCIDCSGVHRSLGVH 73 (144)
T ss_dssp GGBCTTTCCB---SCCEEEGGGT-EEECHHHHHHHHHHCTT
T ss_pred CCcCCCCcCC---CCCeEEeccC-EEEhhhchHHHcCCCCC
Confidence 6899999986 7999988889 89999999888887764
No 28
>1k81_A EIF-2-beta, probable translation initiation factor 2 beta subunit; zinc ribbon; NMR {Methanocaldococcus jannaschii} SCOP: g.59.1.1
Probab=30.29 E-value=6.9 Score=26.41 Aligned_cols=28 Identities=36% Similarity=0.783 Sum_probs=19.2
Q ss_pred ccccccccccCCCccccCCCCC-cccchHHHHH
Q 017195 206 ICQHCGISEKLTPAMRRGPAGP-RTLCNACGLM 237 (375)
Q Consensus 206 ~C~~Cg~t~~~TP~WRrGP~G~-~tLCNACGl~ 237 (375)
.|..|+.. .|-+-+++ +. -.-|+|||-.
T Consensus 2 lC~~C~~p--eT~l~~~~--~~~~l~C~aCG~~ 30 (36)
T 1k81_A 2 ICRECGKP--DTKIIKEG--RVHLLKCMACGAI 30 (36)
T ss_dssp CCSSSCSC--EEEEEEET--TEEEEEEETTTEE
T ss_pred CCcCCCCC--CcEEEEeC--CcEEEEhhcCCCc
Confidence 48889988 47777753 22 2459999954
No 29
>3soo_A LINE-1 type transposase domain-containing protein; alpha/beta protein, structural genomics, joint center for ST genomics, JCSG; 2.73A {Homo sapiens} PDB: 2lr6_A
Probab=29.94 E-value=39 Score=27.30 Aligned_cols=27 Identities=15% Similarity=0.313 Sum_probs=21.5
Q ss_pred CCCccceEEEcceEEEeCCCChHHHHHHH
Q 017195 72 TRTSELTVAYEGEVYVFPAVTPHKVQALL 100 (375)
Q Consensus 72 ~~t~QLTIfY~G~V~VFD~Vp~eKaqaIm 100 (375)
.=.+.|+++|+|++..|++ .+|.++.+
T Consensus 44 lYPakLsf~~eGeiksF~d--kqkl~eFi 70 (88)
T 3soo_A 44 LCEVXLAFXCDGEIXTFSD--LQSLRXFA 70 (88)
T ss_dssp CCCCCEEEECSSSEEEESS--HHHHHHHH
T ss_pred cccceEEEEecCceeccCC--HHHccchh
Confidence 3457899999999999997 66766643
No 30
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=29.74 E-value=22 Score=33.53 Aligned_cols=37 Identities=22% Similarity=0.423 Sum_probs=31.9
Q ss_pred ccccccccccccCCCccccCCCCCcccchHHHHHHHhcCCC
Q 017195 204 SRICQHCGISEKLTPAMRRGPAGPRTLCNACGLMWANKGTL 244 (375)
Q Consensus 204 ~~~C~~Cg~t~~~TP~WRrGP~G~~tLCNACGl~~~~~~~~ 244 (375)
...|..||.. -|.|=.=.-| ..||-.|.-..+.-|.+
T Consensus 37 n~~c~dc~~~---~~~~~~~~~~-~~~c~~c~~~hr~~~~~ 73 (329)
T 3o47_A 37 NNVCFECGAF---NPQWVSVTYG-IWICLECSGRHRGLGVH 73 (329)
T ss_dssp TTBCTTTCCB---SCCEEEGGGT-EEECHHHHHHHHHHCTT
T ss_pred CCcCCCCCCC---CCCeEEecCC-EEEChhhhhhhcccCCC
Confidence 5799999986 7999988889 89999999888886654
No 31
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=29.46 E-value=30 Score=31.85 Aligned_cols=37 Identities=22% Similarity=0.449 Sum_probs=31.3
Q ss_pred ccccccccccccCCCccccCCCCCcccchHHHHHHHhcCCC
Q 017195 204 SRICQHCGISEKLTPAMRRGPAGPRTLCNACGLMWANKGTL 244 (375)
Q Consensus 204 ~~~C~~Cg~t~~~TP~WRrGP~G~~tLCNACGl~~~~~~~~ 244 (375)
...|..||.. -|.|-.-.-| ..+|-.|--..+.-|.+
T Consensus 42 n~~c~dc~~~---~p~w~s~~~g-~~~c~~cs~~hr~lg~~ 78 (301)
T 2b0o_E 42 NSQCCDCGAA---DPTWLSTNLG-VLTCIQCSGVHRELGVR 78 (301)
T ss_dssp TTBCTTTCCB---SCCEEETTTT-EEECHHHHHHHHHHCTT
T ss_pred CCcCCCCCCC---CCCeEEeecC-eEEcHHHHHHHHhhCCC
Confidence 6899999986 6999999999 89999997776665543
No 32
>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=28.47 E-value=20 Score=24.65 Aligned_cols=40 Identities=23% Similarity=0.481 Sum_probs=28.4
Q ss_pred ccccccccccccCCCccccCCCCCcccchHHHHHHHhcCCCCC
Q 017195 204 SRICQHCGISEKLTPAMRRGPAGPRTLCNACGLMWANKGTLRD 246 (375)
Q Consensus 204 ~~~C~~Cg~t~~~TP~WRrGP~G~~tLCNACGl~~~~~~~~r~ 246 (375)
...|..|+..-.....+++ .....|..||..|..+..++.
T Consensus 18 ~~~C~~C~k~f~~~~~l~~---~~~~~C~~C~~~f~~~~~l~~ 57 (73)
T 2ctu_A 18 SQKCSKCGIIFIRRSTLSR---RKTPMCEKCRKDSCQEAALNK 57 (73)
T ss_dssp EEECSSSCCEEECCCCCCC---SSSCCCHHHHHTCSCCCSSCC
T ss_pred CeeCCcccchhCCHHHhCc---CCCCCCCCCChhhcCHHHHHH
Confidence 5789999876434444444 446899999999887766544
No 33
>2zjr_Z 50S ribosomal protein L32; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: g.41.8.5 PDB: 1j5a_M* 1jzy_M* 1jzz_M* 1k01_M* 1nkw_Z 1ond_Z* 1sm1_Z* 1yl3_5 2b66_5 2b9n_5 2b9p_5 2zjp_Y* 2zjq_Z 1jzx_M 3cf5_Y* 3dll_Y* 3pio_Z* 3pip_Z* 1nwy_Z* 1nwx_Z* ...
Probab=26.60 E-value=11 Score=28.24 Aligned_cols=23 Identities=22% Similarity=0.582 Sum_probs=17.5
Q ss_pred ccccccccccccCCCccccCCCCCcccchHHHHH
Q 017195 204 SRICQHCGISEKLTPAMRRGPAGPRTLCNACGLM 237 (375)
Q Consensus 204 ~~~C~~Cg~t~~~TP~WRrGP~G~~tLCNACGl~ 237 (375)
...|.+||.. -=+..+|-.||.|
T Consensus 30 l~~c~~cG~~-----------~~pH~vc~~CG~Y 52 (60)
T 2zjr_Z 30 LTECPQCHGK-----------KLSHHICPNCGYY 52 (60)
T ss_dssp CEECTTTCCE-----------ECTTBCCTTTCBS
T ss_pred ceECCCCCCE-----------eCCceEcCCCCcC
Confidence 5789999975 2346899999943
No 34
>3h0g_L DNA-directed RNA polymerases I, II, and III subunit rpabc4; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=25.61 E-value=14 Score=28.10 Aligned_cols=41 Identities=24% Similarity=0.406 Sum_probs=24.1
Q ss_pred CCCCCCcccccccccccccccCCCccccCCCCCcccchHHHHHHHhcC
Q 017195 195 NGSAPPESVSRICQHCGISEKLTPAMRRGPAGPRTLCNACGLMWANKG 242 (375)
Q Consensus 195 ~~~~~~~~~~~~C~~Cg~t~~~TP~WRrGP~G~~tLCNACGl~~~~~~ 242 (375)
.+.+.+..+.-.|..||.. .... .+...-|.-||-+.-.|.
T Consensus 12 ~~~~~~~~v~Y~C~~Cg~~--~~l~-----~~~~iRC~~CG~RILyK~ 52 (63)
T 3h0g_L 12 FNPPRPATMIYLCADCGAR--NTIQ-----AKEVIRCRECGHRVMYKM 52 (63)
T ss_dssp -------CCCCBCSSSCCB--CCCC-----SSSCCCCSSSCCCCCBCC
T ss_pred cCCCCCCCeEEECCCCCCe--eecC-----CCCceECCCCCcEEEEEe
Confidence 3334455568999999986 2322 244688999997765544
No 35
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Probab=25.05 E-value=19 Score=34.74 Aligned_cols=34 Identities=29% Similarity=0.744 Sum_probs=21.6
Q ss_pred ccccccccccccCCC-ccccCCCCCcccchHHHHHHHhc
Q 017195 204 SRICQHCGISEKLTP-AMRRGPAGPRTLCNACGLMWANK 241 (375)
Q Consensus 204 ~~~C~~Cg~t~~~TP-~WRrGP~G~~tLCNACGl~~~~~ 241 (375)
...|.+||.+ +| .-.+--.| .+.|..||+-..-+
T Consensus 21 ~~~Cp~Cg~~---~~~iv~D~~~G-~~vC~~CG~Vl~e~ 55 (345)
T 3k7a_M 21 VLTCPECKVY---PPKIVERFSEG-DVVCALCGLVLSDK 55 (345)
T ss_dssp CCCCSTTCCS---CCCCCCCSSSC-SCCCSSSCCCCCCC
T ss_pred CCcCcCCCCC---CCceEEECCCC-CEecCCCCeEcccc
Confidence 4578888864 33 33333456 68888888876543
No 36
>2lma_A THP5 peptide; CD4+, immune system; NMR {Synthetic}
Probab=23.24 E-value=13 Score=23.30 Aligned_cols=19 Identities=42% Similarity=0.517 Sum_probs=15.2
Q ss_pred CCCCCCCcCCCCCCCCccc
Q 017195 11 ARPYIDTEEHDVAQTPIPI 29 (375)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~ 29 (375)
|+||+.||--|+|.+-.|-
T Consensus 1 wrpylqteyydvmtvispp 19 (26)
T 2lma_A 1 WRPYLQTEYYDVMTVISPP 19 (26)
T ss_dssp CCTTHHHHHHTTSTTSSGG
T ss_pred CCccccceeeeeEEEeCCc
Confidence 8999999999999764443
No 37
>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=28.59 E-value=18 Score=19.94 Aligned_cols=17 Identities=24% Similarity=0.673 Sum_probs=12.5
Q ss_pred ccchHHHHHHHhcCCCC
Q 017195 229 TLCNACGLMWANKGTLR 245 (375)
Q Consensus 229 tLCNACGl~~~~~~~~r 245 (375)
..|+-||..|.....++
T Consensus 3 ~~C~~C~k~f~~~~~l~ 19 (26)
T 2lvu_A 3 YVCERCGKRFVQSSQLA 19 (26)
Confidence 46889999888766543
No 38
>1qyp_A RNA polymerase II; transcription, RPB9, Zn ribbon, hyperthermophilic, extremophIle; NMR {Thermococcus celer} SCOP: g.41.3.1
Probab=22.08 E-value=6.9 Score=28.33 Aligned_cols=37 Identities=24% Similarity=0.607 Sum_probs=25.4
Q ss_pred ccccccccccccC--CCccccCCCCCc--ccchHHHHHHHh
Q 017195 204 SRICQHCGISEKL--TPAMRRGPAGPR--TLCNACGLMWAN 240 (375)
Q Consensus 204 ~~~C~~Cg~t~~~--TP~WRrGP~G~~--tLCNACGl~~~~ 240 (375)
...|..||-.+.. +-+||....+.. ..|-.||..|+.
T Consensus 15 ~~~Cp~Cg~~~~~~~q~Q~rsadep~T~fy~C~~Cg~~w~~ 55 (57)
T 1qyp_A 15 KITCPKCGNDTAYWWEMQTRAGDEPSTIFYKCTKCGHTWRS 55 (57)
T ss_dssp ECCCTTTCCSEEEEEEECCSSSSCSSEEEEEESSSCCEEEC
T ss_pred EeECCCCCCCEEEEEEeecccCCCCCcEEEEcCCCCCEecc
Confidence 5789999975311 347887766633 479899987753
No 39
>3v2d_5 50S ribosomal protein L32; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgq_4 2hgj_4 2hgu_4 2j03_5 2jl6_5 2jl8_5 2v47_5 2v49_5 2wdi_5 2wdj_5 2wdl_5 2wdn_5 2wh2_5 2wh4_5 2wrj_5 2wrl_5 2wro_5 2wrr_5 2x9s_5 2x9u_5 ...
Probab=21.89 E-value=14 Score=27.73 Aligned_cols=21 Identities=33% Similarity=0.831 Sum_probs=16.6
Q ss_pred ccccccccccccCCCccccCCCCCcccchHHH
Q 017195 204 SRICQHCGISEKLTPAMRRGPAGPRTLCNACG 235 (375)
Q Consensus 204 ~~~C~~Cg~t~~~TP~WRrGP~G~~tLCNACG 235 (375)
...|.+||.. -=+..+|-.||
T Consensus 30 l~~c~~cGe~-----------~~~H~vc~~CG 50 (60)
T 3v2d_5 30 LVPCPECKAM-----------KPPHTVCPECG 50 (60)
T ss_dssp CEECTTTCCE-----------ECTTSCCTTTC
T ss_pred eeECCCCCCe-----------ecceEEcCCCC
Confidence 5789999975 23467999999
No 40
>2g2k_A EIF-5, eukaryotic translation initiation factor 5; EIF125 fold; NMR {Homo sapiens}
Probab=20.61 E-value=17 Score=32.57 Aligned_cols=31 Identities=23% Similarity=0.409 Sum_probs=20.8
Q ss_pred cccccccccccCCCccccCCCC-CcccchHHHHH
Q 017195 205 RICQHCGISEKLTPAMRRGPAG-PRTLCNACGLM 237 (375)
Q Consensus 205 ~~C~~Cg~t~~~TP~WRrGP~G-~~tLCNACGl~ 237 (375)
-.|..|+.. .|-+-+..-.+ --.-|+|||-.
T Consensus 97 VlC~~C~sP--dT~L~k~~~~r~~~l~C~ACGa~ 128 (170)
T 2g2k_A 97 VLCPECENP--ETDLHVNPKKQTIGNSCKACGYR 128 (170)
T ss_dssp HSCTTTSSS--CEEEEEETTTTEEEEEETTTCCC
T ss_pred EECCCCCCC--ccEEEEecCCCEEEEEccccCCc
Confidence 579999988 58777732122 13569999854
Done!