Your job contains 1 sequence.
>017196
MEEAKKKSMPVLPWMRSPVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQ
ETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDV
FAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATP
GRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFL
PSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETR
YKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRI
KIKEYSGLQRQSVRR
The BLAST search returned 3 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 017196
(375 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2130839 - symbol:RH1 "RNA helicase 1" species:... 1454 6.2e-149 1
UNIPROTKB|E2R5R1 - symbol:DDX51 "Uncharacterized protein"... 509 8.5e-49 1
UNIPROTKB|Q8N8A6 - symbol:DDX51 "ATP-dependent RNA helica... 505 2.3e-48 1
MGI|MGI:1916913 - symbol:Ddx51 "DEAD (Asp-Glu-Ala-Asp) bo... 485 3.0e-46 1
RGD|1309580 - symbol:Ddx51 "DEAD (Asp-Glu-Ala-Asp) box po... 484 3.8e-46 1
UNIPROTKB|F1MGC9 - symbol:DDX51 "Uncharacterized protein"... 397 1.2e-45 2
UNIPROTKB|E1BUI4 - symbol:DDX51 "Uncharacterized protein"... 393 9.5e-44 2
DICTYBASE|DDB_G0293740 - symbol:ddx51 "DEAD/DEAH box heli... 435 5.9e-41 1
ZFIN|ZDB-GENE-040927-28 - symbol:ddx51 "DEAD (Asp-Glu-Ala... 432 2.4e-40 1
ASPGD|ASPL0000059362 - symbol:AN0637 species:162425 "Emer... 237 4.0e-37 3
FB|FBgn0004556 - symbol:Dbp73D "Dead box protein 73D" spe... 385 5.8e-35 1
POMBASE|SPCC285.03 - symbol:SPCC285.03 "ATP-dependent RNA... 324 1.7e-28 1
UNIPROTKB|G4N9X9 - symbol:MGG_03229 "ATP-dependent RNA he... 184 1.4e-24 3
POMBASE|SPAC823.08c - symbol:SPAC823.08c "ATP-dependent R... 153 2.3e-24 3
ASPGD|ASPL0000013201 - symbol:AN4233 species:162425 "Emer... 150 1.8e-23 3
SGD|S000003931 - symbol:DRS1 "Nucleolar DEAD-box protein ... 161 7.2e-22 3
CGD|CAL0000864 - symbol:DRS1 species:5476 "Candida albica... 143 1.1e-21 3
UNIPROTKB|Q5ACK7 - symbol:DRS1 "ATP-dependent RNA helicas... 143 1.1e-21 3
POMBASE|SPAC30D11.03 - symbol:ddx27 "ATP-dependent RNA he... 149 4.5e-21 3
RGD|1311124 - symbol:Ddx49 "DEAD (Asp-Glu-Ala-Asp) box po... 133 1.5e-19 3
ZFIN|ZDB-GENE-031001-8 - symbol:ddx27 "DEAD (Asp-Glu-Ala-... 150 3.4e-19 3
MGI|MGI:2136689 - symbol:Ddx49 "DEAD (Asp-Glu-Ala-Asp) bo... 132 5.1e-19 3
MGI|MGI:2385884 - symbol:Ddx27 "DEAD (Asp-Glu-Ala-Asp) bo... 156 5.3e-19 3
UNIPROTKB|F1S7D9 - symbol:DDX49 "Uncharacterized protein"... 132 5.3e-19 3
UNIPROTKB|E2RBM7 - symbol:DDX49 "Uncharacterized protein"... 132 8.9e-19 3
UNIPROTKB|G3V0G3 - symbol:DDX56 "DEAD (Asp-Glu-Ala-Asp) b... 161 1.3e-18 2
UNIPROTKB|Q9Y6V7 - symbol:DDX49 "Probable ATP-dependent R... 132 2.2e-18 3
UNIPROTKB|A1A4H6 - symbol:DDX27 "Probable ATP-dependent R... 152 2.5e-18 3
UNIPROTKB|Q96GQ7 - symbol:DDX27 "Probable ATP-dependent R... 152 3.7e-18 3
UNIPROTKB|F1Q073 - symbol:DDX27 "Uncharacterized protein"... 150 4.3e-18 3
UNIPROTKB|J9P9C6 - symbol:DDX27 "Uncharacterized protein"... 150 4.8e-18 3
UNIPROTKB|Q9NY93 - symbol:DDX56 "Probable ATP-dependent R... 161 5.7e-18 2
ZFIN|ZDB-GENE-031030-3 - symbol:ddx49 "DEAD (Asp-Glu-Ala-... 135 8.9e-18 3
ZFIN|ZDB-GENE-030131-9685 - symbol:ddx18 "DEAD (Asp-Glu-A... 140 1.3e-17 3
CGD|CAL0001062 - symbol:orf19.3704 species:5476 "Candida ... 165 2.4e-17 2
UNIPROTKB|F1NQV5 - symbol:DDX27 "Uncharacterized protein"... 142 4.4e-17 3
UNIPROTKB|G3V6M5 - symbol:Ddx56 "Protein Ddx56" species:1... 155 4.4e-17 2
UNIPROTKB|Q3SZ40 - symbol:DDX56 "Probable ATP-dependent R... 153 4.7e-17 2
UNIPROTKB|Q5ZLB0 - symbol:DDX47 "Uncharacterized protein"... 147 4.7e-17 2
SGD|S000001107 - symbol:RRP3 "Protein involved in rRNA pr... 146 6.8e-17 2
MGI|MGI:1277172 - symbol:Ddx56 "DEAD (Asp-Glu-Ala-Asp) bo... 153 7.6e-17 2
MGI|MGI:1915005 - symbol:Ddx47 "DEAD (Asp-Glu-Ala-Asp) bo... 141 8.9e-17 2
UNIPROTKB|G3V727 - symbol:Ddx47 "Protein Ddx47" species:1... 141 8.9e-17 2
UNIPROTKB|I3L976 - symbol:DDX47 "Uncharacterized protein"... 141 9.0e-17 2
UNIPROTKB|Q29S22 - symbol:DDX47 "Probable ATP-dependent R... 141 9.1e-17 2
UNIPROTKB|E2R316 - symbol:DDX55 "Uncharacterized protein"... 184 1.1e-16 2
UNIPROTKB|E2RN03 - symbol:DDX47 "Uncharacterized protein"... 140 1.4e-16 2
UNIPROTKB|Q9H0S4 - symbol:DDX47 "Probable ATP-dependent R... 140 1.5e-16 2
UNIPROTKB|F1NEQ3 - symbol:DDX18 "Uncharacterized protein"... 131 1.8e-16 3
FB|FBgn0001565 - symbol:Hlc "Helicase" species:7227 "Dros... 159 2.4e-16 2
UNIPROTKB|F1P8J6 - symbol:DDX55 "Uncharacterized protein"... 184 2.4e-16 2
UNIPROTKB|E1C187 - symbol:DDX27 "Uncharacterized protein"... 133 4.7e-16 3
UNIPROTKB|F5H5U2 - symbol:DDX55 "ATP-dependent RNA helica... 176 6.7e-16 2
UNIPROTKB|F1RFL5 - symbol:DDX55 "Uncharacterized protein"... 179 7.4e-16 2
UNIPROTKB|Q8NHQ9 - symbol:DDX55 "ATP-dependent RNA helica... 176 8.0e-16 2
ZFIN|ZDB-GENE-050522-359 - symbol:zgc:112350 "zgc:112350"... 144 8.3e-16 2
TAIR|locus:2152099 - symbol:AT5G65900 species:3702 "Arabi... 137 8.5e-16 3
DICTYBASE|DDB_G0270396 - symbol:ddx49 "DEAD/DEAH box heli... 130 1.0e-15 3
FB|FBgn0010220 - symbol:Dbp45A "DEAD box protein 45A" spe... 151 1.2e-15 3
MGI|MGI:1915098 - symbol:Ddx55 "DEAD (Asp-Glu-Ala-Asp) bo... 177 1.3e-15 2
UNIPROTKB|Q8EI96 - symbol:srmB "ATP-dependent RNA helicas... 145 1.7e-15 2
TIGR_CMR|SO_0947 - symbol:SO_0947 "ATP-dependent RNA heli... 145 1.7e-15 2
TAIR|locus:2173517 - symbol:AT5G60990 species:3702 "Arabi... 163 1.9e-15 2
TAIR|locus:2087832 - symbol:PMH1 "putative mitochondrial ... 140 2.2e-15 3
UNIPROTKB|F1NA53 - symbol:DDX49 "Uncharacterized protein"... 145 3.9e-15 2
ASPGD|ASPL0000000390 - symbol:AN6374 species:162425 "Emer... 187 4.2e-15 2
WB|WBGene00012059 - symbol:T26G10.1 species:6239 "Caenorh... 134 4.9e-15 2
UNIPROTKB|Q8EDC4 - symbol:SO_2838 "ATP-dependent RNA heli... 151 5.9e-15 3
TIGR_CMR|SO_2838 - symbol:SO_2838 "ATP-dependent RNA heli... 151 5.9e-15 3
FB|FBgn0032919 - symbol:CG9253 species:7227 "Drosophila m... 136 6.6e-15 2
UNIPROTKB|F1NYX0 - symbol:DDX49 "Uncharacterized protein"... 145 7.4e-15 2
RGD|2324094 - symbol:Ddx55 "DEAD (Asp-Glu-Ala-Asp) box po... 169 1.0e-14 2
UNIPROTKB|I3LQ10 - symbol:LOC100626268 "Uncharacterized p... 191 1.1e-14 2
UNIPROTKB|F1NJA0 - symbol:DDX55 "ATP-dependent RNA helica... 167 1.7e-14 2
TAIR|locus:2087852 - symbol:PMH2 "putative mitochondrial ... 140 1.9e-14 3
UNIPROTKB|F1MW45 - symbol:DDX55 "ATP-dependent RNA helica... 169 3.5e-14 2
UNIPROTKB|Q5ZLN8 - symbol:DDX55 "ATP-dependent RNA helica... 164 3.7e-14 2
TAIR|locus:504955106 - symbol:emb1138 "embryo defective 1... 187 6.9e-14 2
CGD|CAL0000056 - symbol:orf19.7546 species:5476 "Candida ... 166 1.1e-13 2
UNIPROTKB|Q2NL08 - symbol:DDX55 "ATP-dependent RNA helica... 164 1.3e-13 2
UNIPROTKB|D4A824 - symbol:Ddx18 "Protein Ddx18" species:1... 132 1.3e-13 2
RGD|1549712 - symbol:Ddx18 "DEAD (Asp-Glu-Ala-Asp) box po... 132 1.4e-13 2
UNIPROTKB|J3QLN6 - symbol:EIF4A1 "Eukaryotic initiation f... 128 1.5e-13 2
UNIPROTKB|Q48AV0 - symbol:CPS_0042 "ATP-dependent RNA hel... 138 1.5e-13 2
TIGR_CMR|CPS_0042 - symbol:CPS_0042 "ATP-dependent RNA he... 138 1.5e-13 2
ZFIN|ZDB-GENE-021212-1 - symbol:ddx55 "DEAD (Asp-Glu-Ala-... 154 1.6e-13 2
MGI|MGI:1914192 - symbol:Ddx18 "DEAD (Asp-Glu-Ala-Asp) bo... 133 1.6e-13 2
UNIPROTKB|F1N533 - symbol:DDX18 "Uncharacterized protein"... 132 1.7e-13 2
UNIPROTKB|F1MSX0 - symbol:F1MSX0 "Uncharacterized protein... 132 1.8e-13 2
UNIPROTKB|Q47Z59 - symbol:CPS_3215 "Putative ATP-dependen... 147 1.8e-13 3
TIGR_CMR|CPS_3215 - symbol:CPS_3215 "putative ATP-depende... 147 1.8e-13 3
GENEDB_PFALCIPARUM|PFF1500c - symbol:PFF1500c "DEAD/DEAH ... 119 2.0e-13 3
UNIPROTKB|C6KTE4 - symbol:PFF1500c "DEAD/DEAH box ATP-dep... 119 2.0e-13 3
POMBASE|SPBC543.06c - symbol:dbp8 "ATP-dependent RNA heli... 140 2.5e-13 3
UNIPROTKB|E2RPT4 - symbol:DDX50 "Uncharacterized protein"... 148 4.5e-13 2
WB|WBGene00021277 - symbol:Y23H5B.6 species:6239 "Caenorh... 124 4.6e-13 3
SGD|S000004903 - symbol:HAS1 "ATP-dependent RNA helicase"... 137 4.7e-13 2
TAIR|locus:2130918 - symbol:AT4G16630 species:3702 "Arabi... 158 5.2e-13 2
UNIPROTKB|E2QTT0 - symbol:DDX50 "Uncharacterized protein"... 148 5.4e-13 2
FB|FBgn0027602 - symbol:CG8611 species:7227 "Drosophila m... 167 6.0e-13 2
WARNING: Descriptions of 540 database sequences were not reported due to the
limiting value of parameter V = 100.
>TAIR|locus:2130839 [details] [associations]
symbol:RH1 "RNA helicase 1" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISM]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA;ISS]
[GO:0006406 "mRNA export from nucleus" evidence=RCA] [GO:0006606
"protein import into nucleus" evidence=RCA] [GO:0006626 "protein
targeting to mitochondrion" evidence=RCA] [GO:0009560 "embryo sac
egg cell differentiation" evidence=RCA] [GO:0009640
"photomorphogenesis" evidence=RCA] [GO:0010388 "cullin
deneddylation" evidence=RCA] [GO:0017151 "DEAD/H-box RNA helicase
binding" evidence=TAS] InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:CP002687 GenomeReviews:CT486007_GR
GO:GO:0003723 GO:GO:0017151 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 EMBL:Z97339 GO:GO:0008026 eggNOG:COG0513
PROSITE:PS51195 EMBL:AL161542 KO:K14807 HOGENOM:HOG000239572
OMA:CSKTELE EMBL:Y11187 EMBL:Y11154 IPI:IPI00538787 PIR:A71424
PIR:E85175 RefSeq:NP_193320.6 UniGene:At.33
ProteinModelPortal:Q7FGZ2 SMR:Q7FGZ2 STRING:Q7FGZ2 PaxDb:Q7FGZ2
PRIDE:Q7FGZ2 EnsemblPlants:AT4G15850.1 GeneID:827266
KEGG:ath:AT4G15850 GeneFarm:907 TAIR:At4g15850 InParanoid:Q7FGZ2
Genevestigator:Q7FGZ2 GermOnline:AT4G15850 Uniprot:Q7FGZ2
Length = 522
Score = 1454 (516.9 bits), Expect = 6.2e-149, P = 6.2e-149
Identities = 283/373 (75%), Positives = 326/373 (87%)
Query: 2 EEAKKKSMPVLPWMRSPVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQE 61
+E K + V+PWMR+PVDVS E+C LD LPCL+P+LK AL+NMGISSLFPVQVAVW E
Sbjct: 5 KEDKTEMDSVVPWMRAPVDVSNVENCALDTLPCLNPKLKKALENMGISSLFPVQVAVWHE 64
Query: 62 TIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVF 121
TIGPG FERD+C+NSPTGSGKTLSYALPIVQ L++R VRCLRALVVLPTRDLALQVKDVF
Sbjct: 65 TIGPGGFERDICVNSPTGSGKTLSYALPIVQLLASRPVRCLRALVVLPTRDLALQVKDVF 124
Query: 122 AAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPG 181
AIAPAVGLSVG AVGQSSIA EIS+LIK PKL+AGICYDP+D+ Q L+SAVDILVATPG
Sbjct: 125 DAIAPAVGLSVGSAVGQSSIAGEISQLIKTPKLDAGICYDPDDLSQNLESAVDILVATPG 184
Query: 182 RLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLP 241
RLMDHIN T+GFTLEHL YLVVDETDRLLREAYQ+WLPTVLQLT++ +++ F + F+P
Sbjct: 185 RLMDHINNTKGFTLEHLRYLVVDETDRLLREAYQSWLPTVLQLTQTSDDSLFPSFTPFVP 244
Query: 242 SAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRY 301
SAFGSL+T+RR VERGFK KPYPRLVKMVLSATLTQDP+KL QLDLHHPLF+TTG +RY
Sbjct: 245 SAFGSLQTVRRQSVERGFKGKPYPRLVKMVLSATLTQDPSKLIQLDLHHPLFMTTGGSRY 304
Query: 302 KLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIK 361
+LPE+LE +LICE+ +KP+YLVALL+S EKCI+FTSSVE+T RLC LLN FG+ +IK
Sbjct: 305 RLPEKLECLRLICETGMKPVYLVALLKSWEGEKCIIFTSSVETTRRLCKLLNFFGDPKIK 364
Query: 362 IKEYSGLQRQSVR 374
KEYSG QS+R
Sbjct: 365 AKEYSGGLNQSLR 377
>UNIPROTKB|E2R5R1 [details] [associations]
symbol:DDX51 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 KO:K14807 OMA:HIDQTPG GeneTree:ENSGT00550000075141
CTD:317781 EMBL:AAEX03014583 RefSeq:XP_543351.2
Ensembl:ENSCAFT00000010222 GeneID:486226 KEGG:cfa:486226
Uniprot:E2R5R1
Length = 631
Score = 509 (184.2 bits), Expect = 8.5e-49, P = 8.5e-49
Identities = 147/399 (36%), Positives = 211/399 (52%)
Query: 7 KSMPVLP-WMRSPVDV--SLFEDC-PLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQ-- 60
K+ P LP W+ P V S+ ED P++ +P + P ++ LQ GISS FPVQ AV
Sbjct: 137 KAQPFLPLWLAEPSSVGKSVTEDLVPIEDIPEVHPDMQKKLQAHGISSYFPVQAAVIPTL 196
Query: 61 -ETIGPG-LFER------DLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRD 112
E+I G L R DLC+++PTGSGKTL++ +P+VQ L RAV +RALVVLPT++
Sbjct: 197 LESIANGFLVARGGYRPSDLCVSAPTGSGKTLAFVIPVVQALLCRAVCQVRALVVLPTKE 256
Query: 113 LALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSA 172
LA QV VF A L V L GQ S+ E L+++ + +
Sbjct: 257 LAQQVSKVFNIYTDATPLRVALITGQKSLVKEQESLVQK-------------TVDGFRCL 303
Query: 173 VDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLT-RSDNEN 231
D++VATPGRL+DHI+ T GF+L+HL +L++DE DR++ +Q+WLP V++ SD N
Sbjct: 304 ADVVVATPGRLVDHIDQTPGFSLQHLRFLIIDEADRMIDSMHQSWLPRVVEAAFPSDVAN 363
Query: 232 RFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHP 291
D L L+ + P L K++ SATLTQ+P KL QL L+ P
Sbjct: 364 ---DPFALLQRR--QLQATTAASISC-----PQMPLQKLLFSATLTQNPEKLQQLGLYQP 413
Query: 292 -LFLT------------TGET--RYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCI 336
LF T GE+ +Y P L + + C + KPL ++ L+ + +
Sbjct: 414 RLFSTGLAGRGPRDIDRDGESGGKYTFPTGLSHHYVPCSLRTKPLAILHLILERNFSRVL 473
Query: 337 VFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRR 375
FT+S E++HRL L+ FG + E+S R R+
Sbjct: 474 CFTNSRENSHRLFLLVQAFGG--VAAAEFSSRCRPGQRK 510
>UNIPROTKB|Q8N8A6 [details] [associations]
symbol:DDX51 "ATP-dependent RNA helicase DDX51"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006364 "rRNA
processing" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005730 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0008026 eggNOG:COG0513 KO:K14807 OMA:HIDQTPG CTD:317781
HOGENOM:HOG000239572 HOVERGEN:HBG081427 OrthoDB:EOG4JM7PM
EMBL:AK097078 EMBL:AC138466 EMBL:BC012461 EMBL:BC040185
EMBL:CR936870 IPI:IPI00217541 RefSeq:NP_778236.2 UniGene:Hs.445168
ProteinModelPortal:Q8N8A6 SMR:Q8N8A6 IntAct:Q8N8A6 STRING:Q8N8A6
PhosphoSite:Q8N8A6 DMDM:229462978 PaxDb:Q8N8A6 PRIDE:Q8N8A6
Ensembl:ENST00000397333 GeneID:317781 KEGG:hsa:317781
UCSC:uc001ujy.4 GeneCards:GC12M132621 H-InvDB:HIX0018137
HGNC:HGNC:20082 HPA:HPA039503 neXtProt:NX_Q8N8A6
PharmGKB:PA134974036 InParanoid:Q8N8A6 PhylomeDB:Q8N8A6
GenomeRNAi:317781 NextBio:96442 Bgee:Q8N8A6 CleanEx:HS_DDX51
Genevestigator:Q8N8A6 GermOnline:ENSG00000185163 Uniprot:Q8N8A6
Length = 666
Score = 505 (182.8 bits), Expect = 2.3e-48, P = 2.3e-48
Identities = 146/397 (36%), Positives = 209/397 (52%)
Query: 7 KSMPVLP-WMRSP--VDVSLFEDC-PLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQ-- 60
K P LP W+ P V ++ ED P++ +P + P L+ L+ GISS FPVQ AV
Sbjct: 173 KVQPFLPRWLAEPNCVRRNVTEDLVPIEDIPDVHPDLQKQLRAHGISSYFPVQAAVIPAL 232
Query: 61 -ET------IGPGLFE-RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRD 112
E+ +G G + DLC+++PTGSGKTL++ +P+VQ L +R V +RALVVLPT++
Sbjct: 233 LESAACGFLVGRGGYRPSDLCVSAPTGSGKTLAFVIPVVQALLSRVVCHIRALVVLPTKE 292
Query: 113 LALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSA 172
LA QV VF A L V L GQ S+A E L++ K G Y +
Sbjct: 293 LAQQVSKVFNIYTDATPLRVSLVTGQKSLAKEQESLVQ--KTADG--Y---------RCL 339
Query: 173 VDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENR 232
DI+VATPGRL+DHI+ T GF+L+ L +L++DE DR++ +Q+WLP V+
Sbjct: 340 ADIVVATPGRLVDHIDQTPGFSLQQLRFLIIDEADRMIDSMHQSWLPRVVAAA------- 392
Query: 233 FSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPL 292
F P A L+ + V P L K++ SATLTQ+P KL QL LH P
Sbjct: 393 FQSEDPADPCAL--LQRRQAQAVTAASTCCPQMPLQKLLFSATLTQNPEKLQQLGLHQPR 450
Query: 293 FLTTG-------ET-------RYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVF 338
+TG +T +Y P L + + C KPL ++ L+ +G + + F
Sbjct: 451 LFSTGLAHRGLEDTDGDGDSGKYAFPVGLTHHYVPCSLSSKPLVVLHLVLEMGFSRVLCF 510
Query: 339 TSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRR 375
T+S E++HRL L+ FG + + E+S RR
Sbjct: 511 TNSRENSHRLFLLVQAFGG--VDVAEFSSRYGPGQRR 545
>MGI|MGI:1916913 [details] [associations]
symbol:Ddx51 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 51"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006364 "rRNA processing" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0042254 "ribosome
biogenesis" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 MGI:MGI:1916913 GO:GO:0005524
GO:GO:0005730 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513
KO:K14807 OMA:HIDQTPG GeneTree:ENSGT00550000075141 CTD:317781
HOGENOM:HOG000239572 HOVERGEN:HBG081427 OrthoDB:EOG4JM7PM
EMBL:AK152599 EMBL:BC060646 IPI:IPI00396728 RefSeq:NP_081432.2
UniGene:Mm.392735 UniGene:Mm.5267 ProteinModelPortal:Q6P9R1
SMR:Q6P9R1 PhosphoSite:Q6P9R1 PaxDb:Q6P9R1 PRIDE:Q6P9R1
Ensembl:ENSMUST00000031478 GeneID:69663 KEGG:mmu:69663
UCSC:uc008yre.2 InParanoid:Q6P9R1 ChiTaRS:DDX51 NextBio:330022
Bgee:Q6P9R1 CleanEx:MM_DDX51 Genevestigator:Q6P9R1
GermOnline:ENSMUSG00000029504 Uniprot:Q6P9R1
Length = 639
Score = 485 (175.8 bits), Expect = 3.0e-46, P = 3.0e-46
Identities = 141/389 (36%), Positives = 206/389 (52%)
Query: 7 KSMPVLP-WMRSP--VDVSLFEDC-PLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQ-- 60
K P LP W+ P V S+ ED P++ +P + P L+ L+ GI+S FPVQ AV
Sbjct: 145 KVQPFLPAWLAKPSCVKKSVTEDLTPIEDIPEVHPDLQKQLRANGITSYFPVQAAVIPAL 204
Query: 61 -ET------IGPGLFE-RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRD 112
E+ IG G ++ DLC+++PTGSGKTL++ +P+VQ L +R V +RALVVLPT++
Sbjct: 205 LESADHGFLIGRGGYQPSDLCVSAPTGSGKTLAFVIPVVQALLHRVVCHIRALVVLPTKE 264
Query: 113 LALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSA 172
LA QV VF L V L GQ S+A E L++ K G +
Sbjct: 265 LAQQVSKVFNIYTDTTPLRVALVTGQKSLAKEQESLVQ--KTADGF-----------RCL 311
Query: 173 VDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENR 232
DI+VATPGRL+DHI+ T GF+L+ L +L++DE DR++ +Q+WLP V+
Sbjct: 312 ADIVVATPGRLVDHIDQTPGFSLQQLRFLIIDEADRMIDSMHQSWLPRVVAAAF------ 365
Query: 233 FSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHP- 291
+S+ T + L+ + + P L K++ SATLTQDP KL +L L+ P
Sbjct: 366 YSEGPT---GSCALLQRTQPQALTAASTCVPQMPLQKLLFSATLTQDPEKLQRLGLYQPR 422
Query: 292 LFLT---------TGET-----RYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIV 337
LF T T E +Y P L + + C KPL ++ L+ + + +
Sbjct: 423 LFSTRLGQQSPKDTAEVDENSGKYTFPVGLTHHYVPCRLSSKPLIVLHLVLRMSCSRALC 482
Query: 338 FTSSVESTHRLCTLLNHFGELRIKIKEYS 366
FT+S E++HRL L FG + + E+S
Sbjct: 483 FTNSRENSHRLYLLAQAFGG--VSVAEFS 509
>RGD|1309580 [details] [associations]
symbol:Ddx51 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 51"
species:10116 "Rattus norvegicus" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 RGD:1309580 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
OMA:HIDQTPG OrthoDB:EOG4JM7PM IPI:IPI00371200
Ensembl:ENSRNOT00000056729 UCSC:RGD:1309580 ArrayExpress:D3ZQ94
Uniprot:D3ZQ94
Length = 635
Score = 484 (175.4 bits), Expect = 3.8e-46, P = 3.8e-46
Identities = 144/391 (36%), Positives = 204/391 (52%)
Query: 7 KSMPVLP-WMRSP--VDVSLFEDC-PLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQ-- 60
K P LP W+ P V S+ ED P++ +P + P L+ L+ GISS FPVQ AV
Sbjct: 141 KVQPFLPAWLAKPSCVKKSVTEDLTPIEDIPEVHPDLQKQLRANGISSYFPVQAAVIPAL 200
Query: 61 -ET------IGPGLFE-RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRD 112
E+ +G G ++ DLC+++PTGSGKTL++ +P+VQ L +R V +RALVVLPT++
Sbjct: 201 LESADNGFLVGRGGYQPSDLCVSAPTGSGKTLAFVIPVVQALLHRVVCHIRALVVLPTKE 260
Query: 113 LALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSA 172
LA QV VF L V L GQ S+A E L++ K G C
Sbjct: 261 LAQQVSKVFNIYTDTTPLRVALVTGQKSLAKEQESLVQ--KTADGFC-----------CL 307
Query: 173 VDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENR 232
DI+VATPGRL+DHI+ T GF+L+ L +L++DE DR++ +Q+WLP V+ +
Sbjct: 308 ADIVVATPGRLVDHIDQTPGFSLQQLRFLIIDEADRMIDSMHQSWLPRVVAAAFYTEDPT 367
Query: 233 FSDA--STFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHH 290
S A P A + T C P L K++ SATLTQ+P KL +L L+
Sbjct: 368 GSCALLQRTQPQAVTAAST---C--------IPQMPLQKLLFSATLTQNPEKLQRLGLYQ 416
Query: 291 P-LFLT---------TGET-----RYKLPERLESYKLICESKLKPLYLVALLQSLGEEKC 335
P LF T T E +Y P L + + C KPL + L+ + +
Sbjct: 417 PRLFSTRLGHQSPRDTVEVDENLGKYTFPVGLTHHYVPCRLSSKPLIVFHLVLGMNFSRA 476
Query: 336 IVFTSSVESTHRLCTLLNHFGELRIKIKEYS 366
+ FT+S E++HRL L FG + + E+S
Sbjct: 477 LCFTNSRENSHRLFLLAQAFGG--VSVAEFS 505
>UNIPROTKB|F1MGC9 [details] [associations]
symbol:DDX51 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 OMA:HIDQTPG GeneTree:ENSGT00550000075141
EMBL:DAAA02044956 IPI:IPI01003566 ProteinModelPortal:F1MGC9
Ensembl:ENSBTAT00000022893 Uniprot:F1MGC9
Length = 546
Score = 397 (144.8 bits), Expect = 1.2e-45, Sum P(2) = 1.2e-45
Identities = 98/230 (42%), Positives = 136/230 (59%)
Query: 7 KSMPVLP-WMRSP--VDVSLFEDC-PLDHLPCLDPRLKVALQNMGISSLFPVQVAV---- 58
K P LP W+ P V ++ E P++ +P + P L+ L+ GISS FPVQ AV
Sbjct: 50 KVQPFLPVWLAQPSCVGKNVTEGLVPIEDIPEVHPDLQKKLRAQGISSYFPVQAAVIPAV 109
Query: 59 WQETIGPGLFER------DLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRD 112
+ T L R DLC+++PTGSGKTL++ +P+VQ L +RAV +RALVVLPT++
Sbjct: 110 LESTANGFLVSRGGYRPSDLCVSAPTGSGKTLAFVIPVVQALLHRAVCQVRALVVLPTKE 169
Query: 113 LALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSA 172
LA QV VF A L V L GQ S+A E L++ K G +
Sbjct: 170 LAQQVSKVFNVYTDATPLRVALITGQKSLAKEQESLVQ--KTADGF-----------RCL 216
Query: 173 VDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVL 222
DI+VATPGRL+DHI+ T GF+L+HL +L++DE DR++ +Q+WLP V+
Sbjct: 217 ADIMVATPGRLVDHIDQTPGFSLQHLRFLIIDEADRMIDSMHQSWLPRVV 266
Score = 217 (81.4 bits), Expect = 2.8e-21, Sum P(2) = 2.8e-21
Identities = 50/124 (40%), Positives = 71/124 (57%)
Query: 174 DILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRF 233
DI+VATPGRL+DHI+ T GF+L+HL +L++DE DR++ +Q+WLP V+ +E
Sbjct: 218 DIMVATPGRLVDHIDQTPGFSLQHLRFLIIDEADRMIDSMHQSWLPRVVAAA-FPSEGPR 276
Query: 234 SDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLF 293
+ F + L C P L K++ SATLTQ+P KL QL L+ P
Sbjct: 277 DPCAVFQRTQPRVLTAASMCC--------PQMPLQKLLFSATLTQNPEKLQQLGLYQPRL 328
Query: 294 LTTG 297
+TG
Sbjct: 329 FSTG 332
Score = 99 (39.9 bits), Expect = 1.2e-45, Sum P(2) = 1.2e-45
Identities = 22/76 (28%), Positives = 41/76 (53%)
Query: 300 RYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELR 359
+Y P L+ + + C + KPL ++ L+ + + + FT+S E++HRL L+ FG +
Sbjct: 352 KYTFPTGLKHHYVPCSLRFKPLVILHLILEMNFSRVLCFTNSRENSHRLFLLVQAFGGVT 411
Query: 360 IK--IKEYSGLQRQSV 373
+ Y QR+S+
Sbjct: 412 VAEFSSRYGPGQRKSI 427
>UNIPROTKB|E1BUI4 [details] [associations]
symbol:DDX51 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 OMA:HIDQTPG GeneTree:ENSGT00550000075141
EMBL:AADN02043240 IPI:IPI00601309 Ensembl:ENSGALT00000010245
Uniprot:E1BUI4
Length = 676
Score = 393 (143.4 bits), Expect = 9.5e-44, Sum P(2) = 9.5e-44
Identities = 101/240 (42%), Positives = 140/240 (58%)
Query: 6 KKSMPVLP-WMRSP--VDVSLFEDC-PLDHLPCLDPRLKVALQNMGISSLFPVQV----A 57
+K P LP W+ P V + E+ P+ +P + P+L LQ GI S FPVQ A
Sbjct: 179 QKVQPFLPHWLAQPKLVQKRIKENLIPIRDVPGIHPKLLKKLQMNGIESFFPVQAEVIPA 238
Query: 58 VWQET-----IGPGLFE-RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTR 111
V Q +G G + +D+C+++PTGSGKTLS+ +PIVQ L +R V +RALVVLPT+
Sbjct: 239 VLQSASNGYLVGQGGYRPKDICVSAPTGSGKTLSFVIPIVQVLLDRVVCQVRALVVLPTK 298
Query: 112 DLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQS 171
+LA QV VF GL V L GQ S A E E++ + K+ G C S
Sbjct: 299 ELAQQVSKVFNIYTDGTGLKVVLITGQKSFAKE-QEMLVQKKV-TGYC-----------S 345
Query: 172 AVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLT-RSDNE 230
DI+VATPGRL DHI+ T GF+L L +L+VDE DR++ + +Q WL V++ +++NE
Sbjct: 346 LADIIVATPGRLADHISKTPGFSLTQLRFLIVDEADRMIDDMHQNWLNQVVKAAFQAENE 405
Score = 212 (79.7 bits), Expect = 2.6e-14, P = 2.6e-14
Identities = 59/150 (39%), Positives = 79/150 (52%)
Query: 171 SAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNE 230
S DI+VATPGRL DHI+ T GF+L L +L+VDE DR++ + +Q WL V++ E
Sbjct: 345 SLADIIVATPGRLADHISKTPGFSLTQLRFLIVDEADRMIDDMHQNWLNQVVKAA-FQAE 403
Query: 231 NRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPR--LVKMVLSATLTQDPNKLAQLDL 288
N F + G + C YP+ L K++ SATLTQDP KL QL L
Sbjct: 404 NEAGSNMLFQRTKPGPVTAASCC----------YPQIPLQKLLFSATLTQDPEKLQQLGL 453
Query: 289 HHP-LFLTTGETRYKLPERLESYKLICESK 317
P LF + + L + E+ K CE K
Sbjct: 454 FQPRLFTSVYSEKKTLRDGTET-KEDCEEK 482
Score = 97 (39.2 bits), Expect = 9.5e-44, Sum P(2) = 9.5e-44
Identities = 24/69 (34%), Positives = 38/69 (55%)
Query: 298 ETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGE 357
E +Y LPE L + C+ KPL L+ + + + + FT+S E++HRL L+ FG
Sbjct: 480 EEKYTLPEGLSQSYVPCDLNSKPLLLLHFMLTKKFTRVLCFTNSREASHRLFLLVQAFGG 539
Query: 358 LRIKIKEYS 366
I + E+S
Sbjct: 540 --ITVAEFS 546
>DICTYBASE|DDB_G0293740 [details] [associations]
symbol:ddx51 "DEAD/DEAH box helicase" species:44689
"Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0042254 "ribosome biogenesis"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0006364 "rRNA processing" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 dictyBase:DDB_G0293740 GO:GO:0005524
GenomeReviews:CM000155_GR GO:GO:0005730 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 EMBL:AAFI02000218
GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K14807 OMA:HIDQTPG RefSeq:XP_629093.1
ProteinModelPortal:Q54BD6 EnsemblProtists:DDB0234210 GeneID:8629386
KEGG:ddi:DDB_G0293740 Uniprot:Q54BD6
Length = 563
Score = 435 (158.2 bits), Expect = 5.9e-41, P = 5.9e-41
Identities = 114/302 (37%), Positives = 174/302 (57%)
Query: 43 LQNMGISSLFPVQVAVWQETIGPGLFE---RDLCINSPTGSGKTLSYALPIVQTLSNRAV 99
L+ I +LFPVQ QE + P + D+C+ +PTGSGKTL+YA+P+VQ + R V
Sbjct: 30 LKEQSIINLFPVQ----QEIV-PFINRTEGHDICVCAPTGSGKTLAYAIPLVQKIVKRVV 84
Query: 100 RCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGIC 159
R +R V++PT DL +QV+ F +I L V L++G E LIK
Sbjct: 85 RRVRVAVIVPTHDLVIQVEKTFQSIIKGTDLVV-LSLGVKPFHIEQKLLIKNHS------ 137
Query: 160 YDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLP 219
Y E L E S VDI+V+TPGR++DHIN T GFTL++L YLV+DE DRLLR+++Q WL
Sbjct: 138 YG-EHALYE--SLVDIIVSTPGRIVDHINETLGFTLKYLNYLVIDEADRLLRQSFQDWLE 194
Query: 220 TVLQLTRSDNE-NRFSDASTFLPSAFGSLKTIRRC-GVERGFKDKPYP-----RLVKMVL 272
V+ T ++ N+ + ++ G ++ + ++ + +LVK++L
Sbjct: 195 IVIDSTNQHSDLNQQQEEQLIKYNSKGDIELFEKSISLKDNNNQMNHLCWSEFKLVKLLL 254
Query: 273 SATLTQDPNKLAQLDLHHPLFLTTGETR---YKLPERLESYKLICESKLKPLYLVALL-Q 328
SAT+T +P+K++ L L+ PLF TT +T+ Y +P L+ +I KPL L+ ++ +
Sbjct: 255 SATMTYNPSKISLLQLNAPLFFTTSKTKEIKYSMPSTLKECYIISNGDQKPLVLLNIIYE 314
Query: 329 SL 330
SL
Sbjct: 315 SL 316
Score = 179 (68.1 bits), Expect = 1.0e-10, P = 1.0e-10
Identities = 48/116 (41%), Positives = 71/116 (61%)
Query: 266 RLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETR---YKLPERLESYKLICESKLKPLY 322
+LVK++LSAT+T +P+K++ L L+ PLF TT +T+ Y +P L+ +I KPL
Sbjct: 248 KLVKLLLSATMTYNPSKISLLQLNAPLFFTTSKTKEIKYSMPSTLKECYIISNGDQKPLV 307
Query: 323 LVALL-QSL------GE--EKCIVFTSSVESTHRLCTLLNHFGE---LRIKIKEYS 366
L+ ++ +SL GE +K I FT SV+ THRL TLL G+ L+ +EYS
Sbjct: 308 LLNIIYESLLKNNANGENKKKIICFTKSVDITHRLNTLLKLIGQVDKLKFTCEEYS 363
>ZFIN|ZDB-GENE-040927-28 [details] [associations]
symbol:ddx51 "DEAD (Asp-Glu-Ala-Asp) box polypeptide
51" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0042254 "ribosome biogenesis"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0006364 "rRNA processing" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 ZFIN:ZDB-GENE-040927-28 GO:GO:0005524
GO:GO:0005730 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513
KO:K14807 EMBL:AY648772 IPI:IPI00500210 RefSeq:NP_001003864.1
UniGene:Dr.77952 ProteinModelPortal:Q6DRI7 STRING:Q6DRI7
PRIDE:Q6DRI7 GeneID:445387 KEGG:dre:445387 CTD:317781
HOGENOM:HOG000239572 HOVERGEN:HBG081427 InParanoid:Q6DRI7
OrthoDB:EOG4JM7PM NextBio:20832091 ArrayExpress:Q6DRI7
Uniprot:Q6DRI7
Length = 652
Score = 432 (157.1 bits), Expect = 2.4e-40, P = 2.4e-40
Identities = 125/383 (32%), Positives = 190/383 (49%)
Query: 2 EEAKKKSMPVLP-WMRSPVDVSLFEDC-----PLDHLPCLDPRLKVALQNMGISSLFPVQ 55
E+ +K VLP W+ P DV + +D P+ +P + P L LQ GI S FPVQ
Sbjct: 159 EKDVQKVKRVLPQWLSQP-DV-IQKDIKSNLIPISEVPGICPTLLRKLQTNGIQSFFPVQ 216
Query: 56 VAVWQ---ETIGPGLF-------ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRAL 105
V E++G GL RD+C+++PTGSGKTL++ +P+VQ LS R VR +RAL
Sbjct: 217 AEVIPAILESVGSGLLVGPGGYRPRDVCVSAPTGSGKTLAFVIPVVQALSKRVVRQVRAL 276
Query: 106 VVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDV 165
VLPT++LA QV +VF+A L V + GQ S A E + L ++ G+ +
Sbjct: 277 AVLPTKELAQQVSNVFSAYTEGSSLKVVMITGQKSFAAEQTAL---SEIRGGVSH----- 328
Query: 166 LQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLT 225
S DI+VATPGRL+DHIN F+L+HL +L++DE DR++ +Q+WL V +
Sbjct: 329 -----SMADIVVATPGRLVDHINKNSSFSLQHLRFLIIDEADRMIDSMHQSWLSQVTKAV 383
Query: 226 RSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQ 285
S + S F + G + + + + + D ++
Sbjct: 384 YSTPGE--THTSVFRRTVPGPITAASLSPPQIPLQKLLFSATLTQNPEKLQLLDLHQPRL 441
Query: 286 LDLHHPLFLTTGETR--YKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVE 343
H L +++ + P+ L Y + C KPL ++ L L + FT+S E
Sbjct: 442 FSSTHSLTDNPAQSQDTFHFPQGLSEYYVPCTFSKKPLIILHFLLRLKFSPALCFTNSRE 501
Query: 344 STHRLCTLLNHFGELRIKIKEYS 366
HRL L+ FG +++ E+S
Sbjct: 502 GAHRLYLLVKLFGG--VEVAEFS 522
>ASPGD|ASPL0000059362 [details] [associations]
symbol:AN0637 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:BN001308
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K14807 HOGENOM:HOG000203294 EMBL:AACD01000008 RefSeq:XP_658241.1
ProteinModelPortal:Q5BFP3 EnsemblFungi:CADANIAT00002039
GeneID:2876415 KEGG:ani:AN0637.2 OMA:KQAREAC OrthoDB:EOG4CRQ7F
Uniprot:Q5BFP3
Length = 853
Score = 237 (88.5 bits), Expect = 4.0e-37, Sum P(3) = 4.0e-37
Identities = 75/193 (38%), Positives = 102/193 (52%)
Query: 173 VDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQ-LTRSDNEN 231
VDIL+ TPGRL+DHI T+GFTL+HL +LV+DE DRLL E++Q W+ V+Q L
Sbjct: 427 VDILICTPGRLVDHIRYTKGFTLKHLQWLVIDEADRLLNESFQEWVDVVMQSLDARKAYG 486
Query: 232 RFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHP 291
F + FL SL+T K+ PR K+VLSAT+T+D +KL L L +P
Sbjct: 487 AFGPSGRFLADLGMSLQT----------KE---PR--KVVLSATMTKDVSKLNSLRLTNP 531
Query: 292 LFLTTG------------------ETRYKLPERLESYKL-ICESKLKPLYLVALLQSLGE 332
+ G + R+ LP L Y + + + + KPLYL+ LL L E
Sbjct: 532 RLVVVGGSDQTTTADDESGVVVHADERFTLPTTLREYSIAVGDGEHKPLYLLRLL--LSE 589
Query: 333 EKCIVFTSSVEST 345
K V SS + T
Sbjct: 590 MKLDV-PSSTKRT 601
Score = 230 (86.0 bits), Expect = 4.0e-37, Sum P(3) = 4.0e-37
Identities = 62/167 (37%), Positives = 86/167 (51%)
Query: 1 MEEAKKKSMPVLP-WMRSPVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVW 59
+EEA+K + LP W+ +PV S L ++P+L L+ G F VQ AV
Sbjct: 224 VEEAEKPTYSSLPPWLANPVRASAETRAKFSDLG-IEPKLLRVLEVNGYKEAFAVQAAVI 282
Query: 60 QETI-GPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVK 118
+ GP D+C+++ TGSGKTLSY LP+V L LR L+V+PTR+L Q +
Sbjct: 283 PLLLKGPNNHTGDICVSAATGSGKTLSYVLPLVTELEQIPAPRLRGLIVVPTRELVKQAR 342
Query: 119 DVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDV 165
+ GL VG AVG +I DE L++ +E Y PE V
Sbjct: 343 EACEFCTAGTGLRVGSAVGNVAIKDEQRSLMR---IEH--VYSPESV 384
Score = 41 (19.5 bits), Expect = 4.0e-37, Sum P(3) = 4.0e-37
Identities = 9/17 (52%), Positives = 11/17 (64%)
Query: 336 IVFTSSVESTHRLCTLL 352
++FT S ES RL LL
Sbjct: 685 LIFTKSSESASRLSRLL 701
>FB|FBgn0004556 [details] [associations]
symbol:Dbp73D "Dead box protein 73D" species:7227 "Drosophila
melanogaster" [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=NAS] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0022008 "neurogenesis"
evidence=IMP] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:AE014296
GO:GO:0005730 GO:GO:0022008 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026
eggNOG:COG0513 KO:K14807 GeneTree:ENSGT00550000075141 EMBL:M74824
EMBL:AF132173 EMBL:BT010045 PIR:S28762 RefSeq:NP_476833.1
UniGene:Dm.3199 ProteinModelPortal:P26802 SMR:P26802 PaxDb:P26802
PRIDE:P26802 EnsemblMetazoa:FBtr0075347 GeneID:39871
KEGG:dme:Dmel_CG9680 CTD:39871 FlyBase:FBgn0004556
InParanoid:P26802 OMA:CSKTELE OrthoDB:EOG4B8GVH PhylomeDB:P26802
GenomeRNAi:39871 NextBio:815810 Bgee:P26802 GermOnline:CG9680
Uniprot:P26802
Length = 687
Score = 385 (140.6 bits), Expect = 5.8e-35, P = 5.8e-35
Identities = 138/400 (34%), Positives = 200/400 (50%)
Query: 4 AKKKSMPV-LP-WMRSPVDV---SLF--EDCP----LDHLPCLDPRLKVALQNMGISSLF 52
AKKK + + LP W+ P + SL E+ P +D L L+ AL+ M I LF
Sbjct: 102 AKKKKVQMQLPNWLAHPTIIEGGSLQPEEEVPASEAIDQLDYLEKYTCQALKQMKIKRLF 161
Query: 53 PVQVAV--W--QETIGPGLFE-RDLCINSPTGSGKTLSYALPIVQTLSNRAVRC-LRALV 106
PVQ V W + P F RD+C+++PTGSGKTL++A+PIVQ LS R V C +RALV
Sbjct: 162 PVQKQVIPWILEAHAKPPPFRPRDICVSAPTGSGKTLAFAIPIVQLLSQR-VDCKVRALV 220
Query: 107 VLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVL 166
VLP +LALQV V + + L V L Q + DE +L+++ K G Y
Sbjct: 221 VLPVAELALQVYRVISELCSKTELEVCLLSKQHKLEDEQEKLVEQYK---GKYY------ 271
Query: 167 QELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTR 226
S DI+V TPGRL+DH++AT+GF L+ L +LV+DE DR++ +Q WL + +
Sbjct: 272 ----SKADIVVTTPGRLVDHLHATKGFCLKSLKFLVIDEADRIMDAVFQNWLYHLDSHVK 327
Query: 227 SDNENRFSDAST-----FLPSAFGSL--KTIRRCGVERGFKDKPYPRLVKMVLSAT-LTQ 278
+ + L ++FG K + + + + RL + L AT LT
Sbjct: 328 ETTDQLLAGTQAPLCYAELQASFGKQPHKLLFSATLSQDPEKLQDLRLFQPRLFATVLTM 387
Query: 279 DPNKLAQLDLHHPLFLTT-GET--RYKLPERLESYKLICESKLKPLYLVALLQSLGEEKC 335
K A + LT G+ RY P L + E +LKPL + AL++ ++
Sbjct: 388 PVLKDATEEGADTEALTDPGQFVGRYTTPAELTEQYCVTELRLKPLTVFALVEKYKWKRF 447
Query: 336 IVFTSSVESTHRLCTLLNH-FGELRIKIKEYSGLQRQSVR 374
+ FT+S + RL +L F + K+ E SG VR
Sbjct: 448 LCFTNSSDQATRLTFVLKVLFQKYSTKVSELSGNLSAKVR 487
>POMBASE|SPCC285.03 [details] [associations]
symbol:SPCC285.03 "ATP-dependent RNA helicase Dbp6
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISO] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=ISO] [GO:0005829 "cytosol" evidence=IDA] [GO:0006364 "rRNA
processing" evidence=ISO] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 PomBase:SPCC285.03 GO:GO:0005829
GO:GO:0005524 GO:GO:0005730 EMBL:CU329672 GenomeReviews:CU329672_GR
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K14807 EMBL:D89259 PIR:T41249 PIR:T43184
RefSeq:NP_588332.1 ProteinModelPortal:Q76PD3
EnsemblFungi:SPCC285.03.1 GeneID:2538809 KEGG:spo:SPCC285.03
HOGENOM:HOG000203294 OMA:HIDQTPG OrthoDB:EOG490BK3 NextBio:20799991
Uniprot:Q76PD3
Length = 604
Score = 324 (119.1 bits), Expect = 1.7e-28, P = 1.7e-28
Identities = 85/224 (37%), Positives = 119/224 (53%)
Query: 6 KKSMPVLP-WMRSPVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETI- 63
K VLP W+ P+ V L + +L LQ I+ F VQ AV +
Sbjct: 104 KNITSVLPKWLAEPITVDPNTTVEFSSLN-ISSKLVERLQKQNITRGFAVQAAVLPLLLQ 162
Query: 64 ----GPGL-FERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVK 118
GP + D+C+++ TGSGKTLSY +PIVQ LS+R V LR +V++PTR+L +QV
Sbjct: 163 DGRHGPMYSYGGDVCVSAATGSGKTLSYVIPIVQCLSHRTVPRLRCVVIVPTRELTVQVA 222
Query: 119 DVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVA 178
F GL V GQ S+ E +L G E + +D+LV+
Sbjct: 223 KTFEYYMSGAGLQVCAWTGQKSLRHETYQL-------NG---------DENECRIDVLVS 266
Query: 179 TPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVL 222
TPGRL+DHI F+L+HL Y+V+DE DRLL +++Q W+ TV+
Sbjct: 267 TPGRLVDHIRNDESFSLQHLRYMVIDEADRLLDQSFQDWVDTVM 310
Score = 238 (88.8 bits), Expect = 1.9e-17, P = 1.9e-17
Identities = 72/204 (35%), Positives = 106/204 (51%)
Query: 168 ELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVL-QLTR 226
E + +D+LV+TPGRL+DHI F+L+HL Y+V+DE DRLL +++Q W+ TV+ +++
Sbjct: 256 ENECRIDVLVSTPGRLVDHIRNDESFSLQHLRYMVIDEADRLLDQSFQDWVDTVMMEISH 315
Query: 227 S---DNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKL 283
N++ D + F L I R P P L K+V SATLT+DP+K+
Sbjct: 316 PKCLQNKSNILDLDQNISPTF--LPDIDTLLPYR----LPSP-LQKLVFSATLTRDPSKI 368
Query: 284 AQLDLHHP-LFLTT---------GETR-----YKLPERLESYKLICESKLKPLYLVALLQ 328
A L LH+P L L GE + +P L+ Y + S+ KP+ L L+
Sbjct: 369 ASLKLHNPRLVLVQNKDMEVDDGGEIEDDAIVFSVPPTLQEYHVSVSSE-KPILLYHLIH 427
Query: 329 SLGEEKCIVFTSSVESTHRLCTLL 352
S + F S E+ RL LL
Sbjct: 428 SKNLTNILCFVKSNEAAARLHRLL 451
>UNIPROTKB|G4N9X9 [details] [associations]
symbol:MGG_03229 "ATP-dependent RNA helicase dbp6"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 EMBL:CM001234
GO:GO:0008026 KO:K14807 RefSeq:XP_003716750.1
EnsemblFungi:MGG_03229T0 GeneID:2676463 KEGG:mgr:MGG_03229
Uniprot:G4N9X9
Length = 896
Score = 184 (69.8 bits), Expect = 1.4e-24, Sum P(3) = 1.4e-24
Identities = 54/169 (31%), Positives = 86/169 (50%)
Query: 166 LQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLT 225
+ L S VDIL+ TPGRL++HI T GF L+++ +LVVDE D+LL ++YQ WL V++
Sbjct: 477 VDHLVSKVDILICTPGRLVEHIERTPGFNLDYVRWLVVDEADKLLEQSYQQWLDVVMEKL 536
Query: 226 RSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFK--DKPYPRLVKMVLSATLTQDPNKL 283
S N+ D + G K I + R +K R +M++ ++T P
Sbjct: 537 -STNKPGCRDF--MFQNKSGVRKVILSATMTRNVSLLNKLNLRRPEMIVLESVTAVPTSA 593
Query: 284 A--QLDLHHPLFLTTGETRYKLPERLESYKL-ICESKLKPLYLVALLQS 329
+ D+ + LP +L + + + + + KP+YLV LL S
Sbjct: 594 SGPTTDIAG-VSAEASSYELALPSQLLEFAIKVRDPEQKPMYLVDLLSS 641
Score = 177 (67.4 bits), Expect = 1.4e-24, Sum P(3) = 1.4e-24
Identities = 60/173 (34%), Positives = 86/173 (49%)
Query: 12 LP-WMRSPVDVSL---FEDCPLDHLPCL--DPRLKVALQNMGISSLFPVQVAVWQETIGP 65
LP W++SP+ VS E L P L P + L G F VQ A +
Sbjct: 278 LPLWLQSPLYVSSGTQAEWASLGLRPELGISPEIASQLALKGYPGAFAVQTAAIPRLLPR 337
Query: 66 GLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIA 125
+ DL I++ TGSGKTL+Y LP+++ +S AV LRAL+V+PTR+L QV +V A
Sbjct: 338 PDRQGDLVISAATGSGKTLAYVLPMIRDISLGAVTKLRALIVVPTRELVQQVHEVCNICA 397
Query: 126 PAVG-------LSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQS 171
A + +G AVG + E +L+ + + YDPE + +QS
Sbjct: 398 AAYARQPNRKTVRIGTAVGNQAFKKEQEKLMDKDRR-----YDPEGYARLVQS 445
Score = 39 (18.8 bits), Expect = 1.4e-24, Sum P(3) = 1.4e-24
Identities = 9/20 (45%), Positives = 12/20 (60%)
Query: 333 EKCIVFTSSVESTHRLCTLL 352
+ ++FT S ES RL LL
Sbjct: 705 DSVLIFTKSNESALRLSRLL 724
>POMBASE|SPAC823.08c [details] [associations]
symbol:SPAC823.08c "ATP-dependent RNA helicase Rrp3
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISS] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=ISS] [GO:0005829 "cytosol" evidence=IDA] [GO:0006364 "rRNA
processing" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 PomBase:SPAC823.08c GO:GO:0005829
GO:GO:0005524 EMBL:CU329670 GO:GO:0005730 GenomeReviews:CU329670_GR
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268802 KO:K14777 OMA:IFIPSKF
OrthoDB:EOG4ZPJ3P RefSeq:NP_593835.1 ProteinModelPortal:Q9P6N8
SMR:Q9P6N8 STRING:Q9P6N8 EnsemblFungi:SPAC823.08c.1 GeneID:2543571
KEGG:spo:SPAC823.08c NextBio:20804578 Uniprot:Q9P6N8
Length = 465
Score = 153 (58.9 bits), Expect = 2.3e-24, Sum P(3) = 2.3e-24
Identities = 42/130 (32%), Positives = 71/130 (54%)
Query: 42 ALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRC 101
A + +G + P+Q QE I L +RD+ + TGSGKT ++ALP++Q L N
Sbjct: 60 ACEKLGFKTPTPIQ----QEAIPVVLNKRDVIGLAQTGSGKTAAFALPVIQELWNNPSPF 115
Query: 102 LRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYD 161
A+V+ PTR+LA Q+ + F AI ++G+ + VG + + L K+P + +C
Sbjct: 116 F-AVVLAPTRELAYQISEQFEAIGGSIGVRSVVIVGGMDMVTQAVALSKKPHVL--VC-T 171
Query: 162 PEDVLQELQS 171
P ++ L++
Sbjct: 172 PGRLMDHLEN 181
Score = 130 (50.8 bits), Expect = 2.3e-24, Sum P(3) = 2.3e-24
Identities = 24/50 (48%), Positives = 37/50 (74%)
Query: 175 ILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQL 224
+LV TPGRLMDH+ T+GF+L++L YL++DE DRLL + + +L++
Sbjct: 167 VLVCTPGRLMDHLENTKGFSLKNLKYLIMDEADRLLDMDFGPIIDKILKI 216
Score = 107 (42.7 bits), Expect = 2.3e-24, Sum P(3) = 2.3e-24
Identities = 30/102 (29%), Positives = 47/102 (46%)
Query: 255 VERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLIC 314
+++ K P+ R ++ SAT+T KL + LH P+ + +++ + L L
Sbjct: 210 IDKILKIIPHERRT-LLFSATMTSKVEKLQRASLHQPVRVAVS-SKFSTVDTLIQRYLFF 267
Query: 315 ESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFG 356
K K YLV L+ L I+F +V T RL LL G
Sbjct: 268 PFKHKDTYLVYLVNELAGNSIIIFARTVNDTQRLAILLRTLG 309
>ASPGD|ASPL0000013201 [details] [associations]
symbol:AN4233 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 GO:GO:0003723 EMBL:BN001302
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0008026 EMBL:AACD01000068 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268802 KO:K14777 OMA:IFIPSKF
RefSeq:XP_661837.1 ProteinModelPortal:Q5B5E7 SMR:Q5B5E7
STRING:Q5B5E7 EnsemblFungi:CADANIAT00004427 GeneID:2873652
KEGG:ani:AN4233.2 OrthoDB:EOG4ZPJ3P Uniprot:Q5B5E7
Length = 465
Score = 150 (57.9 bits), Expect = 1.8e-23, Sum P(3) = 1.8e-23
Identities = 42/130 (32%), Positives = 67/130 (51%)
Query: 42 ALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRC 101
A +NMG + P+Q + I L RD+ + TGSGKT ++ALP++Q L A +
Sbjct: 60 ACENMGYKAPTPIQ----SQAIPLALEGRDVIGLAETGSGKTAAFALPMLQALME-APQT 114
Query: 102 LRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYD 161
L LV+ PTR+LA Q+ F + +G+ + VG + + L K+P + I
Sbjct: 115 LFGLVLAPTRELAYQISQAFETLGSTIGVRCAVIVGGMDMVAQSIALGKKPHI---IVAT 171
Query: 162 PEDVLQELQS 171
P +L L++
Sbjct: 172 PGRLLDHLEN 181
Score = 130 (50.8 bits), Expect = 1.8e-23, Sum P(3) = 1.8e-23
Identities = 28/61 (45%), Positives = 41/61 (67%)
Query: 175 ILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQ-LTRSDNENRF 233
I+VATPGRL+DH+ T+GF+L +L YL +DE DRLL + L +++ L R+ + F
Sbjct: 167 IIVATPGRLLDHLENTKGFSLRNLKYLAIDEADRLLDMDFGESLDKIIRILPRTRHTYLF 226
Query: 234 S 234
S
Sbjct: 227 S 227
Score = 102 (41.0 bits), Expect = 1.8e-23, Sum P(3) = 1.8e-23
Identities = 25/86 (29%), Positives = 44/86 (51%)
Query: 271 VLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSL 330
+ SAT++ L + L +P+ ++ ++Y+ L+S + K K LYLV LL
Sbjct: 225 LFSATMSTKVESLQRASLSNPVRVSVS-SKYQTVSTLQSSYICIPHKHKNLYLVYLLNEF 283
Query: 331 GEEKCIVFTSSVESTHRLCTLLNHFG 356
+ I+FT++V T R+ +L G
Sbjct: 284 AGQSAIIFTTTVHETQRVAFMLRALG 309
>SGD|S000003931 [details] [associations]
symbol:DRS1 "Nucleolar DEAD-box protein required for ribosome
assembly and function" species:4932 "Saccharomyces cerevisiae"
[GO:0000027 "ribosomal large subunit assembly" evidence=TAS]
[GO:0005730 "nucleolus" evidence=IEA;IDA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0042254
"ribosome biogenesis" evidence=IEA] [GO:0030687 "preribosome, large
subunit precursor" evidence=IDA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0006364 "rRNA processing" evidence=TAS]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=TAS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 SGD:S000003931 GO:GO:0005524 GO:GO:0005730
EMBL:BK006945 GO:GO:0003723 GO:GO:0030687 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 EMBL:X91488
GO:GO:0004004 GO:GO:0000027 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00550000074997 HOGENOM:HOG000265456
KO:K13181 OrthoDB:EOG4B01XM EMBL:L00683 EMBL:Z73113 PIR:S64750
RefSeq:NP_013093.1 ProteinModelPortal:P32892 SMR:P32892
DIP:DIP-6471N IntAct:P32892 MINT:MINT-648259 STRING:P32892
PaxDb:P32892 PeptideAtlas:P32892 EnsemblFungi:YLL008W GeneID:850652
KEGG:sce:YLL008W CYGD:YLL008w OMA:RIRKRDH NextBio:966605
Genevestigator:P32892 GermOnline:YLL008W Uniprot:P32892
Length = 752
Score = 161 (61.7 bits), Expect = 7.2e-22, Sum P(3) = 7.2e-22
Identities = 45/121 (37%), Positives = 68/121 (56%)
Query: 37 PRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSN 96
P LK L ++G P+Q A TI L +D+ + TGSGKT ++ +PI++ L
Sbjct: 241 PVLK-GLASLGYVKPSPIQSA----TIPIALLGKDIIAGAVTGSGKTAAFMIPIIERLLY 295
Query: 97 RAVRCL--RALVVLPTRDLALQVKDVFAAIAPAV-GLSVGLAVGQSSIADEISELIKRPK 153
+ + R +V+LPTR+LA+QV DV IA V G++ GLAVG ++ + L RP
Sbjct: 296 KPAKIASTRVIVLLPTRELAIQVADVGKQIARFVSGITFGLAVGGLNLRQQEQMLKSRPD 355
Query: 154 L 154
+
Sbjct: 356 I 356
Score = 135 (52.6 bits), Expect = 7.2e-22, Sum P(3) = 7.2e-22
Identities = 28/71 (39%), Positives = 44/71 (61%)
Query: 167 QELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTR 226
Q L+S DI++ATPGR +DHI + F ++ + LV+DE DR+L E +Q L ++ L
Sbjct: 348 QMLKSRPDIVIATPGRFIDHIRNSASFNVDSVEILVMDEADRMLEEGFQDELNEIMGLLP 407
Query: 227 SDNENRFSDAS 237
S+ +N A+
Sbjct: 408 SNRQNLLFSAT 418
Score = 78 (32.5 bits), Expect = 7.2e-22, Sum P(3) = 7.2e-22
Identities = 29/110 (26%), Positives = 50/110 (45%)
Query: 270 MVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERL--ESYKLICESKLKPLYLVALL 327
++ SAT+ L L L P+ + + K +L E ++ LKP L L+
Sbjct: 413 LLFSATMNSKIKSLVSLSLKKPVRIMIDPPK-KAATKLTQEFVRIRKRDHLKPALLFNLI 471
Query: 328 QSL---GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVR 374
+ L G+++ +VF + E+ HRL ++ G L + + E G Q R
Sbjct: 472 RKLDPTGQKRIVVFVARKETAHRLRIIM---GLLGMSVGELHGSLTQEQR 518
>CGD|CAL0000864 [details] [associations]
symbol:DRS1 species:5476 "Candida albicans" [GO:0035690
"cellular response to drug" evidence=IMP] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0030687 "preribosome, large subunit precursor"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 CGD:CAL0000864 GO:GO:0005524
GO:GO:0005730 GO:GO:0042254 GO:GO:0003723 GO:GO:0035690
EMBL:AACQ01000032 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K13181 RefSeq:XP_719395.1 ProteinModelPortal:Q5ACK7
STRING:Q5ACK7 GeneID:3639045 KEGG:cal:CaO19.7635 Uniprot:Q5ACK7
Length = 613
Score = 143 (55.4 bits), Expect = 1.1e-21, Sum P(3) = 1.1e-21
Identities = 35/110 (31%), Positives = 61/110 (55%)
Query: 47 GISSL-FPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRAL 105
GI+ L F + +I L +D+ + TGSGKT +Y +PI++ L + + +
Sbjct: 144 GIAELKFTKPTPIQSASIPIALLGKDIVAGAQTGSGKTGAYMIPIIERLLYKPSTSTKVI 203
Query: 106 VVLPTRDLALQVKDVFAAIAPAVG-LSVGLAVGQSSIADEISELIKRPKL 154
++ PTR+LALQV + ++ V L++GLAVG ++ + +L RP +
Sbjct: 204 ILTPTRELALQVYEFGKKLSHHVNNLNIGLAVGGLNLRQQEEQLKTRPDI 253
Score = 135 (52.6 bits), Expect = 1.1e-21, Sum P(3) = 1.1e-21
Identities = 25/58 (43%), Positives = 41/58 (70%)
Query: 167 QELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQL 224
++L++ DI++ATPGRL+DHI + F+++ + LV+DE DR+L E +Q L +L L
Sbjct: 245 EQLKTRPDIVIATPGRLIDHIRNSPSFSVQDIQVLVIDEADRMLEEGFQDELTEILSL 302
Score = 93 (37.8 bits), Expect = 1.1e-21, Sum P(3) = 1.1e-21
Identities = 35/129 (27%), Positives = 59/129 (45%)
Query: 255 VERGFKDK--------PYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPER 306
+E GF+D+ P + ++ SAT+ L QL L P+ + + +
Sbjct: 288 LEEGFQDELTEILSLIPKHKRQTLLFSATMNTRIQDLIQLSLQKPVRIMIDPPKSVASKL 347
Query: 307 LESYKLICE-SKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEY 365
L+ + I + +LKP L LL+ + + +VF + E+ HRL +L G L +K+ E
Sbjct: 348 LQQFVRIRKRDQLKPALLYQLLKGVSS-RVVVFVARKETAHRLRIVL---GLLGLKVSEL 403
Query: 366 SGLQRQSVR 374
G Q R
Sbjct: 404 HGALTQEQR 412
>UNIPROTKB|Q5ACK7 [details] [associations]
symbol:DRS1 "ATP-dependent RNA helicase DRS1"
species:237561 "Candida albicans SC5314" [GO:0035690 "cellular
response to drug" evidence=IMP] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 CGD:CAL0000864
GO:GO:0005524 GO:GO:0005730 GO:GO:0042254 GO:GO:0003723
GO:GO:0035690 EMBL:AACQ01000032 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K13181 RefSeq:XP_719395.1
ProteinModelPortal:Q5ACK7 STRING:Q5ACK7 GeneID:3639045
KEGG:cal:CaO19.7635 Uniprot:Q5ACK7
Length = 613
Score = 143 (55.4 bits), Expect = 1.1e-21, Sum P(3) = 1.1e-21
Identities = 35/110 (31%), Positives = 61/110 (55%)
Query: 47 GISSL-FPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRAL 105
GI+ L F + +I L +D+ + TGSGKT +Y +PI++ L + + +
Sbjct: 144 GIAELKFTKPTPIQSASIPIALLGKDIVAGAQTGSGKTGAYMIPIIERLLYKPSTSTKVI 203
Query: 106 VVLPTRDLALQVKDVFAAIAPAVG-LSVGLAVGQSSIADEISELIKRPKL 154
++ PTR+LALQV + ++ V L++GLAVG ++ + +L RP +
Sbjct: 204 ILTPTRELALQVYEFGKKLSHHVNNLNIGLAVGGLNLRQQEEQLKTRPDI 253
Score = 135 (52.6 bits), Expect = 1.1e-21, Sum P(3) = 1.1e-21
Identities = 25/58 (43%), Positives = 41/58 (70%)
Query: 167 QELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQL 224
++L++ DI++ATPGRL+DHI + F+++ + LV+DE DR+L E +Q L +L L
Sbjct: 245 EQLKTRPDIVIATPGRLIDHIRNSPSFSVQDIQVLVIDEADRMLEEGFQDELTEILSL 302
Score = 93 (37.8 bits), Expect = 1.1e-21, Sum P(3) = 1.1e-21
Identities = 35/129 (27%), Positives = 59/129 (45%)
Query: 255 VERGFKDK--------PYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPER 306
+E GF+D+ P + ++ SAT+ L QL L P+ + + +
Sbjct: 288 LEEGFQDELTEILSLIPKHKRQTLLFSATMNTRIQDLIQLSLQKPVRIMIDPPKSVASKL 347
Query: 307 LESYKLICE-SKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEY 365
L+ + I + +LKP L LL+ + + +VF + E+ HRL +L G L +K+ E
Sbjct: 348 LQQFVRIRKRDQLKPALLYQLLKGVSS-RVVVFVARKETAHRLRIVL---GLLGLKVSEL 403
Query: 366 SGLQRQSVR 374
G Q R
Sbjct: 404 HGALTQEQR 412
>POMBASE|SPAC30D11.03 [details] [associations]
symbol:ddx27 "ATP-dependent RNA helicase Ddx27/Drs1
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISO] [GO:0005524 "ATP binding" evidence=ISM]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=ISO;IDA] [GO:0006364 "rRNA processing" evidence=ISO]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 PomBase:SPAC30D11.03 GO:GO:0005524 EMBL:CU329670
GO:GO:0005730 GenomeReviews:CU329670_GR GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000265456 KO:K13181 OrthoDB:EOG4B01XM PIR:S62561
RefSeq:NP_593214.1 ProteinModelPortal:Q09903 STRING:Q09903
EnsemblFungi:SPAC30D11.03.1 GeneID:2543155 KEGG:spo:SPAC30D11.03
NextBio:20804181 Uniprot:Q09903
Length = 754
Score = 149 (57.5 bits), Expect = 4.5e-21, Sum P(3) = 4.5e-21
Identities = 40/111 (36%), Positives = 61/111 (54%)
Query: 47 GISSL-FPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRA--VRCLR 103
G+S+L F V + +TI L +D+ + TGSGKT ++ +PI++ L R V R
Sbjct: 273 GLSNLGFEVPTQIQDKTIPLALLGKDIVGAAVTGSGKTAAFIVPILERLLYRPKKVPTTR 332
Query: 104 ALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKL 154
L++ PTR+LA+Q V IA + V L +G S+ + EL KRP +
Sbjct: 333 VLILCPTRELAMQCHSVATKIASFTDIMVCLCIGGLSLKLQEQELRKRPDI 383
Score = 135 (52.6 bits), Expect = 4.5e-21, Sum P(3) = 4.5e-21
Identities = 24/57 (42%), Positives = 41/57 (71%)
Query: 167 QELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQ 223
QEL+ DI++ATPGR +DH+ ++GFT+E++ +V+DE DR+L + + L ++Q
Sbjct: 375 QELRKRPDIVIATPGRFIDHMRNSQGFTVENIEIMVMDEADRMLEDGFADELNEIIQ 431
Score = 84 (34.6 bits), Expect = 4.5e-21, Sum P(3) = 4.5e-21
Identities = 32/110 (29%), Positives = 54/110 (49%)
Query: 270 MVLSATLTQDPNKLAQLDLHHPL--FLTTGETRYKLPERLESYKLICESKL-KPLYLVAL 326
M+ SAT+T + L +L L+ P+ F+ +T KL + E ++ + +L +P L+ L
Sbjct: 440 MLFSATMTDKVDDLIRLSLNRPVRVFVDNKKTTAKLLTQ-EFVRVRPQRELLRPAMLIYL 498
Query: 327 LQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGL--QRQSVR 374
+ L + I+F S H++ + FG L + E G Q Q VR
Sbjct: 499 CKELFHRRTIIFFRSKAFAHKMRVI---FGLLSLNATEIHGSLSQEQRVR 545
>RGD|1311124 [details] [associations]
symbol:Ddx49 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 49"
species:10116 "Rattus norvegicus" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 RGD:1311124 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 OMA:EVRTVEQ
GeneTree:ENSGT00670000098028 IPI:IPI00362462 PRIDE:E9PTF0
Ensembl:ENSRNOT00000004891 UCSC:RGD:1311124 Uniprot:E9PTF0
Length = 480
Score = 133 (51.9 bits), Expect = 1.5e-19, Sum P(3) = 1.5e-19
Identities = 37/111 (33%), Positives = 58/111 (52%)
Query: 44 QNMGISSLFPVQVAVWQETIGPGLFE-RDLCIN-SPTGSGKTLSYALPIVQTLSNRAVRC 101
+ +G+ PVQ+ P + E RD C+ + TGSGKT ++ LPI+Q LS
Sbjct: 18 RQLGLKQPTPVQLGCI-----PAILEGRD-CLGCAKTGSGKTAAFVLPILQKLSEDPYGI 71
Query: 102 LRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRP 152
LV+ PTR+LA Q+ + F + +GL + VG + + EL ++P
Sbjct: 72 F-CLVLTPTRELAYQIAEQFRVLGKPLGLKDCIIVGGMDMVTQALELSRKP 121
Score = 112 (44.5 bits), Expect = 1.5e-19, Sum P(3) = 1.5e-19
Identities = 23/58 (39%), Positives = 37/58 (63%)
Query: 168 ELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREA---YQAWLPTVL 222
EL +++ATPGRL DH+ ++ F ++ + +LV+DE DRLL + + A L T+L
Sbjct: 116 ELSRKPHVVIATPGRLADHLRSSNTFNMKKIRFLVLDEADRLLEQGCTDFTADLETIL 173
Score = 102 (41.0 bits), Expect = 1.5e-19, Sum P(3) = 1.5e-19
Identities = 29/90 (32%), Positives = 47/90 (52%)
Query: 270 MVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQS 329
++ SATLT +L L + P F T + E+L+ L+ K+K YLV L+Q+
Sbjct: 183 LLFSATLTDTLKELQGLATNQPFFWEAQAT-VRTVEQLDQRYLLVPEKVKDAYLVHLVQT 241
Query: 330 LGE--EKC--IVFTSSVESTHRLCTLLNHF 355
+ E C I+FT++ ++ LC +L F
Sbjct: 242 FQDQLEDCSIIIFTNTCKTCQILCMMLRKF 271
>ZFIN|ZDB-GENE-031001-8 [details] [associations]
symbol:ddx27 "DEAD (Asp-Glu-Ala-Asp) box polypeptide
27" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 ZFIN:ZDB-GENE-031001-8 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 CTD:55661 HOGENOM:HOG000265456
HOVERGEN:HBG106162 KO:K13181 EMBL:AY648729 IPI:IPI00501087
RefSeq:NP_001002869.1 UniGene:Dr.76523 ProteinModelPortal:Q6DRN0
PRIDE:Q6DRN0 GeneID:378844 KEGG:dre:378844 InParanoid:Q6DRN0
NextBio:20813841 ArrayExpress:Q6DRN0 Bgee:Q6DRN0 Uniprot:Q6DRN0
Length = 776
Score = 150 (57.9 bits), Expect = 3.4e-19, Sum P(3) = 3.4e-19
Identities = 40/118 (33%), Positives = 62/118 (52%)
Query: 37 PRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL-- 94
P LK A+ MG P+Q A + GL +D+C + TG+GKT ++ LP+++ L
Sbjct: 211 PLLK-AISTMGFKQPTPIQKAC----VPVGLLGKDICACAATGTGKTAAFMLPVLERLIY 265
Query: 95 SNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRP 152
R + R LV++PTR+L +QV V +A +S LAVG + + + L P
Sbjct: 266 KPRETQVTRVLVLVPTRELGIQVHTVARQLAQFTTISTCLAVGGLDLKSQEAALRAGP 323
Score = 123 (48.4 bits), Expect = 3.4e-19, Sum P(3) = 3.4e-19
Identities = 21/56 (37%), Positives = 39/56 (69%)
Query: 169 LQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQL 224
L++ D+L+ATPGRL+DH++ T F L + L++DE DR+L E ++ + ++++
Sbjct: 319 LRAGPDVLIATPGRLIDHLHNTPSFELSQIEILILDEADRMLDEYFEEQMKEIIRM 374
Score = 77 (32.2 bits), Expect = 3.4e-19, Sum P(3) = 3.4e-19
Identities = 26/107 (24%), Positives = 49/107 (45%)
Query: 270 MVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKL--KPLYLVALL 327
M+ SAT++++ LA + L P+ + P + + I +K + + ALL
Sbjct: 382 MLFSATMSEEVKDLASVSLKQPVRIFVNSNTDVAPYLRQEFVRIRPNKEGDREAIVAALL 441
Query: 328 QSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVR 374
++ ++FT + + HR+ LL G +K+ E G Q+ R
Sbjct: 442 TRTFQDHVMLFTQTKKQAHRMHILLGLMG---LKVGELHGNLSQTQR 485
>MGI|MGI:2136689 [details] [associations]
symbol:Ddx49 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 49"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0016787 "hydrolase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 MGI:MGI:2136689 GO:GO:0005524
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K14778 HOGENOM:HOG000268802 OMA:EVRTVEQ
GeneTree:ENSGT00670000098028 HOVERGEN:HBG100512 CTD:54555
OrthoDB:EOG4C87SC EMBL:BC099554 IPI:IPI00354271
RefSeq:NP_001020093.2 UniGene:Mm.388127 UniGene:Mm.440659
ProteinModelPortal:Q4FZF3 SMR:Q4FZF3 PhosphoSite:Q4FZF3
PRIDE:Q4FZF3 Ensembl:ENSMUST00000008004 GeneID:234374
KEGG:mmu:234374 UCSC:uc009lzu.1 InParanoid:Q4FZF3 NextBio:382139
Bgee:Q4FZF3 CleanEx:MM_DDX49 Genevestigator:Q4FZF3
GermOnline:ENSMUSG00000057788 Uniprot:Q4FZF3
Length = 480
Score = 132 (51.5 bits), Expect = 5.1e-19, Sum P(3) = 5.1e-19
Identities = 37/111 (33%), Positives = 58/111 (52%)
Query: 44 QNMGISSLFPVQVAVWQETIGPGLFE-RDLCIN-SPTGSGKTLSYALPIVQTLSNRAVRC 101
+ +G+ PVQ+ P + E RD C+ + TGSGKT ++ LPI+Q LS
Sbjct: 18 RQLGLKQPTPVQLGCI-----PAILEGRD-CLGCAKTGSGKTAAFVLPILQKLSEDPYGI 71
Query: 102 LRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRP 152
LV+ PTR+LA Q+ + F + +GL + VG + + EL ++P
Sbjct: 72 F-CLVLTPTRELAYQIAEQFRVLGKPLGLKDCIIVGGMDMVAQALELSRKP 121
Score = 108 (43.1 bits), Expect = 5.1e-19, Sum P(3) = 5.1e-19
Identities = 19/45 (42%), Positives = 31/45 (68%)
Query: 168 ELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLRE 212
EL +++ATPGRL DH+ ++ F ++ + +LV+DE DRLL +
Sbjct: 116 ELSRKPHVVIATPGRLADHLRSSNTFNMKKIQFLVMDEADRLLEQ 160
Score = 102 (41.0 bits), Expect = 5.1e-19, Sum P(3) = 5.1e-19
Identities = 29/90 (32%), Positives = 47/90 (52%)
Query: 270 MVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQS 329
++ SATLT +L L + P F T + E+L+ L+ K+K YLV L+Q+
Sbjct: 183 LLFSATLTDTLKELQGLATNEPFFWEAQAT-VRTVEQLDQRYLLVPEKVKDAYLVHLVQT 241
Query: 330 LGE--EKC--IVFTSSVESTHRLCTLLNHF 355
+ E C I+FT++ ++ LC +L F
Sbjct: 242 FQDQLEDCSIIIFTNTCKTCQILCMMLRKF 271
>MGI|MGI:2385884 [details] [associations]
symbol:Ddx27 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 27"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] [GO:0005634 "nucleus" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0016787 "hydrolase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 MGI:MGI:2385884 GO:GO:0005524
GO:GO:0005634 EMBL:CH466551 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 CTD:55661
GeneTree:ENSGT00550000074997 HOGENOM:HOG000265456
HOVERGEN:HBG106162 KO:K13181 OMA:TRTFTDH OrthoDB:EOG4NVZJV
EMBL:AK134274 EMBL:AK138442 EMBL:AL591711 EMBL:BC011321
EMBL:BC024730 EMBL:BC026381 IPI:IPI00122038 IPI:IPI00230236
RefSeq:NP_694705.2 UniGene:Mm.295031 ProteinModelPortal:Q921N6
SMR:Q921N6 PhosphoSite:Q921N6 PaxDb:Q921N6 PRIDE:Q921N6
Ensembl:ENSMUST00000018143 Ensembl:ENSMUST00000150571 GeneID:228889
KEGG:mmu:228889 UCSC:uc008nza.1 InParanoid:Q3UUG2 NextBio:379240
Bgee:Q921N6 CleanEx:MM_DDX27 Genevestigator:Q921N6
GermOnline:ENSMUSG00000017999 Uniprot:Q921N6
Length = 760
Score = 156 (60.0 bits), Expect = 5.3e-19, Sum P(3) = 5.3e-19
Identities = 48/141 (34%), Positives = 71/141 (50%)
Query: 17 SPVDVSL-FEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCIN 75
S D SL F+D L P LK A+ MG P+Q A I GL +D+C
Sbjct: 178 SEYDKSLSFQDMNLSR-----PLLK-AITAMGFKQPTPIQKAC----IPVGLLGKDICAC 227
Query: 76 SPTGSGKTLSYALPIVQTL--SNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVG 133
+ TG+GKT ++ALP+++ L R R LV++PTR+L +QV V +A ++
Sbjct: 228 AATGTGKTAAFALPVLERLIYKPRQAAVTRVLVLVPTRELGIQVHSVTKQLAQFCSITTC 287
Query: 134 LAVGQSSIADEISELIKRPKL 154
LAVG + + + L P +
Sbjct: 288 LAVGGLDVKSQEAALRAAPDI 308
Score = 120 (47.3 bits), Expect = 5.3e-19, Sum P(3) = 5.3e-19
Identities = 22/56 (39%), Positives = 39/56 (69%)
Query: 169 LQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQL 224
L++A DIL+ATPGRL+DH++ F L + L++DE DR+L E ++ + ++++
Sbjct: 302 LRAAPDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRM 357
Score = 71 (30.1 bits), Expect = 5.3e-19, Sum P(3) = 5.3e-19
Identities = 26/107 (24%), Positives = 49/107 (45%)
Query: 270 MVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKL--KPLYLVALL 327
M+ SAT+T + LA + L +P+ + P + + I ++ + + ALL
Sbjct: 365 MLFSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFIRIRPNREGDREAIVAALL 424
Query: 328 QSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVR 374
+ ++FT + + HR+ LL G L +++ E G Q+ R
Sbjct: 425 MRTFTDHVMLFTQTKKQAHRMHILL---GLLGLQVGELHGNLSQTQR 468
>UNIPROTKB|F1S7D9 [details] [associations]
symbol:DDX49 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 KO:K14778 OMA:EVRTVEQ
GeneTree:ENSGT00670000098028 CTD:54555 EMBL:CU640483
RefSeq:XP_003123587.1 UniGene:Ssc.79767 Ensembl:ENSSSCT00000025399
GeneID:100526038 KEGG:ssc:100526038 Uniprot:F1S7D9
Length = 483
Score = 132 (51.5 bits), Expect = 5.3e-19, Sum P(3) = 5.3e-19
Identities = 37/111 (33%), Positives = 58/111 (52%)
Query: 44 QNMGISSLFPVQVAVWQETIGPGLFE-RDLCIN-SPTGSGKTLSYALPIVQTLSNRAVRC 101
+ +G+ PVQ+ P + E RD C+ + TGSGKT ++ LPI+Q LS
Sbjct: 18 RQLGLKQPTPVQLGCI-----PAILEGRD-CLGCAKTGSGKTAAFVLPILQKLSEDPYGI 71
Query: 102 LRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRP 152
LV+ PTR+LA Q+ + F + +GL + VG + + EL ++P
Sbjct: 72 F-CLVLTPTRELAYQIAEQFRVLGKPLGLKDCIIVGGMDMVAQALELSRKP 121
Score = 109 (43.4 bits), Expect = 5.3e-19, Sum P(3) = 5.3e-19
Identities = 19/45 (42%), Positives = 32/45 (71%)
Query: 168 ELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLRE 212
EL +++ATPGRL DH+ ++ F+++ + +LV+DE DRLL +
Sbjct: 116 ELSRKPHVVIATPGRLADHLRSSNTFSIKKIRFLVMDEADRLLEQ 160
Score = 101 (40.6 bits), Expect = 5.3e-19, Sum P(3) = 5.3e-19
Identities = 27/90 (30%), Positives = 46/90 (51%)
Query: 270 MVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQS 329
++ SATLT +L L + P F + + E+L+ L+ K+K YLV L+Q+
Sbjct: 183 LLFSATLTDTLRELQSLATNQPFFWEA-QAPVRTVEQLDQRYLLVPEKVKDAYLVHLIQN 241
Query: 330 LGEE----KCIVFTSSVESTHRLCTLLNHF 355
+E I+FT++ ++ LC +L F
Sbjct: 242 FQDEHEDWSIIIFTNTCKTCQILCMMLRKF 271
>UNIPROTKB|E2RBM7 [details] [associations]
symbol:DDX49 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 KO:K14778
OMA:EVRTVEQ GeneTree:ENSGT00670000098028 CTD:54555
EMBL:AAEX03012274 RefSeq:XP_541930.1 ProteinModelPortal:E2RBM7
Ensembl:ENSCAFT00000023054 GeneID:484814 KEGG:cfa:484814
NextBio:20858886 Uniprot:E2RBM7
Length = 488
Score = 132 (51.5 bits), Expect = 8.9e-19, Sum P(3) = 8.9e-19
Identities = 37/111 (33%), Positives = 58/111 (52%)
Query: 44 QNMGISSLFPVQVAVWQETIGPGLFE-RDLCIN-SPTGSGKTLSYALPIVQTLSNRAVRC 101
+ +G+ PVQ+ P + E RD C+ + TGSGKT ++ LPI+Q LS
Sbjct: 18 RQLGLKQPTPVQLGCI-----PAILEGRD-CLGCAKTGSGKTAAFVLPILQKLSEDPYGI 71
Query: 102 LRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRP 152
LV+ PTR+LA Q+ + F + +GL + VG + + EL ++P
Sbjct: 72 F-CLVLTPTRELAYQIAEQFRVLGKPLGLKDCIIVGGMDMVAQALELSRKP 121
Score = 109 (43.4 bits), Expect = 8.9e-19, Sum P(3) = 8.9e-19
Identities = 19/45 (42%), Positives = 32/45 (71%)
Query: 168 ELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLRE 212
EL +++ATPGRL DH+ ++ F+++ + +LV+DE DRLL +
Sbjct: 116 ELSRKPHVVIATPGRLADHLRSSNTFSIKKIRFLVMDEADRLLEQ 160
Score = 99 (39.9 bits), Expect = 8.9e-19, Sum P(3) = 8.9e-19
Identities = 27/90 (30%), Positives = 46/90 (51%)
Query: 270 MVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQS 329
++ SATLT +L L + P F + + E+L+ L+ K+K YLV L+Q+
Sbjct: 183 LLFSATLTDTLKELQGLATNQPFFWEA-QAPVRTVEQLDQRYLLVPEKVKDAYLVHLIQN 241
Query: 330 LGEE----KCIVFTSSVESTHRLCTLLNHF 355
+E I+FT++ ++ LC +L F
Sbjct: 242 FQDEHEDWSIIIFTNTCKTCQILCMMLRKF 271
>UNIPROTKB|G3V0G3 [details] [associations]
symbol:DDX56 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 56,
isoform CRA_a" species:9606 "Homo sapiens" [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005730 GO:GO:0003676
EMBL:CH471128 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 EMBL:AC004938
UniGene:Hs.654762 HGNC:HGNC:18193 ProteinModelPortal:G3V0G3
SMR:G3V0G3 Ensembl:ENST00000421223 ArrayExpress:G3V0G3 Bgee:G3V0G3
Uniprot:G3V0G3
Length = 375
Score = 161 (61.7 bits), Expect = 1.3e-18, Sum P(2) = 1.3e-18
Identities = 59/199 (29%), Positives = 97/199 (48%)
Query: 30 DHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALP 89
+H+ LDPRL A+ ++G S +Q ++ I L +DL + TGSGKT +YA+P
Sbjct: 10 EHMG-LDPRLLQAVTDLGWSRPTLIQ----EKAIPLALEGKDLLARARTGSGKTAAYAIP 64
Query: 90 IVQTLSNRAV------RCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIAD 143
++Q L +R + +R LV++PT++LA Q + + +A V +A S+ D
Sbjct: 65 MLQLLLHRKATGPVVEQAVRGLVLVPTKELARQAQSMIQQLATYCARDVRVA-NVSAAED 123
Query: 144 EISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVV 203
+S+ VL E D++V TP R++ H+ + L LVV
Sbjct: 124 SVSQ---------------RAVLMEKP---DVVVGTPSRILSHLQQDSLKLRDSLELLVV 165
Query: 204 DETDRLLREAYQAWLPTVL 222
DE D L ++ L ++L
Sbjct: 166 DEADLLFSFGFEEELKSLL 184
Score = 131 (51.2 bits), Expect = 1.3e-18, Sum P(2) = 1.3e-18
Identities = 32/94 (34%), Positives = 59/94 (62%)
Query: 265 PRLVK-MVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKL-KPLY 322
PR+ + ++SAT +D L +L LH+P+ L E++ P++L+ ++++CE++ K L
Sbjct: 188 PRIYQAFLMSATFNEDVQALKELILHNPVTLKLQESQLPGPDQLQQFQVVCETEEDKFLL 247
Query: 323 LVALLQ-SLGEEKCIVFTSSVESTHRLCTLLNHF 355
L ALL+ SL K ++F +++E ++RL L F
Sbjct: 248 LYALLKLSLIRGKSLLFVNTLERSYRLRLFLEQF 281
>UNIPROTKB|Q9Y6V7 [details] [associations]
symbol:DDX49 "Probable ATP-dependent RNA helicase DDX49"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
EMBL:AC002985 KO:K14778 HOGENOM:HOG000268802 OMA:EVRTVEQ
HOVERGEN:HBG100512 EMBL:AK223294 EMBL:BC002674 IPI:IPI00003739
RefSeq:NP_061943.2 UniGene:Hs.143187 ProteinModelPortal:Q9Y6V7
SMR:Q9Y6V7 IntAct:Q9Y6V7 STRING:Q9Y6V7 PhosphoSite:Q9Y6V7
DMDM:74753527 PaxDb:Q9Y6V7 PRIDE:Q9Y6V7 DNASU:54555
Ensembl:ENST00000247003 GeneID:54555 KEGG:hsa:54555 UCSC:uc002nkq.2
CTD:54555 GeneCards:GC19P019030 HGNC:HGNC:18684 neXtProt:NX_Q9Y6V7
PharmGKB:PA134956171 InParanoid:Q9Y6V7 OrthoDB:EOG4C87SC
PhylomeDB:Q9Y6V7 GenomeRNAi:54555 NextBio:57032 ArrayExpress:Q9Y6V7
Bgee:Q9Y6V7 CleanEx:HS_DDX49 Genevestigator:Q9Y6V7
GermOnline:ENSG00000105671 Uniprot:Q9Y6V7
Length = 483
Score = 132 (51.5 bits), Expect = 2.2e-18, Sum P(3) = 2.2e-18
Identities = 37/111 (33%), Positives = 58/111 (52%)
Query: 44 QNMGISSLFPVQVAVWQETIGPGLFE-RDLCIN-SPTGSGKTLSYALPIVQTLSNRAVRC 101
+ +G+ PVQ+ P + E RD C+ + TGSGKT ++ LPI+Q LS
Sbjct: 18 RQLGLKQPTPVQLGCI-----PAILEGRD-CLGCAKTGSGKTAAFVLPILQKLSEDPYGI 71
Query: 102 LRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRP 152
LV+ PTR+LA Q+ + F + +GL + VG + + EL ++P
Sbjct: 72 F-CLVLTPTRELAYQIAEQFRVLGKPLGLKDCIIVGGMDMVAQALELSRKP 121
Score = 109 (43.4 bits), Expect = 2.2e-18, Sum P(3) = 2.2e-18
Identities = 19/45 (42%), Positives = 32/45 (71%)
Query: 168 ELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLRE 212
EL +++ATPGRL DH+ ++ F+++ + +LV+DE DRLL +
Sbjct: 116 ELSRKPHVVIATPGRLADHLRSSNTFSIKKIRFLVMDEADRLLEQ 160
Score = 95 (38.5 bits), Expect = 2.2e-18, Sum P(3) = 2.2e-18
Identities = 27/90 (30%), Positives = 44/90 (48%)
Query: 270 MVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQS 329
++ SATLT +L L + P F + E+L+ L+ K+K YLV L+Q
Sbjct: 183 LLFSATLTDTLRELQGLATNQPFFWEA-QAPVSTVEQLDQRYLLVPEKVKDAYLVHLIQR 241
Query: 330 LGEE----KCIVFTSSVESTHRLCTLLNHF 355
+E I+FT++ ++ LC +L F
Sbjct: 242 FQDEHEDWSIIIFTNTCKTCQILCMMLRKF 271
>UNIPROTKB|A1A4H6 [details] [associations]
symbol:DDX27 "Probable ATP-dependent RNA helicase DDX27"
species:9913 "Bos taurus" [GO:0005634 "nucleus" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
EMBL:BC126497 IPI:IPI00734460 RefSeq:NP_001073740.1 UniGene:Bt.2644
ProteinModelPortal:A1A4H6 PRIDE:A1A4H6 Ensembl:ENSBTAT00000057089
GeneID:514567 KEGG:bta:514567 CTD:55661
GeneTree:ENSGT00550000074997 HOGENOM:HOG000265456
HOVERGEN:HBG106162 KO:K13181 OMA:TRTFTDH NextBio:20871404
Uniprot:A1A4H6
Length = 765
Score = 152 (58.6 bits), Expect = 2.5e-18, Sum P(3) = 2.5e-18
Identities = 41/120 (34%), Positives = 63/120 (52%)
Query: 37 PRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL-- 94
P LK A+ MG P+Q A I GL +D+C + TG+GKT ++ALP+++ L
Sbjct: 197 PLLK-AITAMGFKQPTPIQKAC----IPVGLLGKDICACAATGTGKTAAFALPVLERLIY 251
Query: 95 SNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKL 154
R R LV++PTR+L +QV V +A ++ LAVG + + + L P +
Sbjct: 252 KPRQAPVTRVLVLVPTRELGIQVHSVTKQLAQFCSITTCLAVGGLDVKSQEAALRAAPDI 311
Score = 120 (47.3 bits), Expect = 2.5e-18, Sum P(3) = 2.5e-18
Identities = 22/56 (39%), Positives = 39/56 (69%)
Query: 169 LQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQL 224
L++A DIL+ATPGRL+DH++ F L + L++DE DR+L E ++ + ++++
Sbjct: 305 LRAAPDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRM 360
Score = 69 (29.3 bits), Expect = 2.5e-18, Sum P(3) = 2.5e-18
Identities = 25/107 (23%), Positives = 48/107 (44%)
Query: 270 MVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKL--KPLYLVALL 327
M+ SAT+T + LA + L +P+ + P + + I ++ + + ALL
Sbjct: 368 MLFSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFIRIRPNREGDREAIVAALL 427
Query: 328 QSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVR 374
+ ++FT + + HR+ LL G +++ E G Q+ R
Sbjct: 428 MRTFTDHVMLFTQTKKQAHRMHILLGLMG---LQVGELHGNLSQTQR 471
>UNIPROTKB|Q96GQ7 [details] [associations]
symbol:DDX27 "Probable ATP-dependent RNA helicase DDX27"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
CTD:55661 HOVERGEN:HBG106162 KO:K13181 OMA:TRTFTDH EMBL:AY044431
EMBL:AF336851 EMBL:AL049766 EMBL:AL357560 EMBL:BC009304
EMBL:BC011927 EMBL:BC016060 EMBL:BC126287 EMBL:BC130275
EMBL:BC144125 EMBL:AK022979 EMBL:AK000603 EMBL:AF193054
EMBL:AF161377 IPI:IPI00293078 RefSeq:NP_060365.7 UniGene:Hs.129261
UniGene:Hs.65234 ProteinModelPortal:Q96GQ7 SMR:Q96GQ7 IntAct:Q96GQ7
MINT:MINT-1420816 STRING:Q96GQ7 PhosphoSite:Q96GQ7 DMDM:29427946
SWISS-2DPAGE:Q96GQ7 PaxDb:Q96GQ7 PeptideAtlas:Q96GQ7 PRIDE:Q96GQ7
DNASU:55661 Ensembl:ENST00000371764 GeneID:55661 KEGG:hsa:55661
UCSC:uc002xuh.3 GeneCards:GC20P047835 HGNC:HGNC:15837 HPA:HPA047087
neXtProt:NX_Q96GQ7 PharmGKB:PA27213 InParanoid:Q96GQ7
OrthoDB:EOG4NVZJV PhylomeDB:Q96GQ7 ChiTaRS:DDX27 GenomeRNAi:55661
NextBio:60399 ArrayExpress:Q96GQ7 Bgee:Q96GQ7 CleanEx:HS_DDX27
Genevestigator:Q96GQ7 GermOnline:ENSG00000124228 Uniprot:Q96GQ7
Length = 796
Score = 152 (58.6 bits), Expect = 3.7e-18, Sum P(3) = 3.7e-18
Identities = 41/120 (34%), Positives = 63/120 (52%)
Query: 37 PRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL-- 94
P LK A+ MG P+Q A I GL +D+C + TG+GKT ++ALP+++ L
Sbjct: 228 PLLK-AITAMGFKQPTPIQKAC----IPVGLLGKDICACAATGTGKTAAFALPVLERLIY 282
Query: 95 SNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKL 154
R R LV++PTR+L +QV V +A ++ LAVG + + + L P +
Sbjct: 283 KPRQAPVTRVLVLVPTRELGIQVHSVTRQLAQFCNITTCLAVGGLDVKSQEAALRAAPDI 342
Score = 120 (47.3 bits), Expect = 3.7e-18, Sum P(3) = 3.7e-18
Identities = 22/56 (39%), Positives = 39/56 (69%)
Query: 169 LQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQL 224
L++A DIL+ATPGRL+DH++ F L + L++DE DR+L E ++ + ++++
Sbjct: 336 LRAAPDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRM 391
Score = 68 (29.0 bits), Expect = 3.7e-18, Sum P(3) = 3.7e-18
Identities = 25/107 (23%), Positives = 48/107 (44%)
Query: 270 MVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKL--KPLYLVALL 327
M+ SAT+T + LA + L +P+ + P + + I ++ + + ALL
Sbjct: 399 MLFSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFIRIRPNREGDREAIVAALL 458
Query: 328 QSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVR 374
+ ++FT + + HR+ LL G +++ E G Q+ R
Sbjct: 459 TRTFTDHVMLFTQTKKQAHRMHILLGLMG---LQVGELHGNLSQTQR 502
>UNIPROTKB|F1Q073 [details] [associations]
symbol:DDX27 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00550000074997 EMBL:AAEX03013992
Ensembl:ENSCAFT00000018089 Uniprot:F1Q073
Length = 767
Score = 150 (57.9 bits), Expect = 4.3e-18, Sum P(3) = 4.3e-18
Identities = 41/120 (34%), Positives = 63/120 (52%)
Query: 37 PRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL-- 94
P LK A+ MG P+Q A I GL +D+C + TG+GKT ++ALP+++ L
Sbjct: 197 PLLK-AITAMGFKQPTPIQKAC----IPVGLLGKDICACAATGTGKTAAFALPVLERLIY 251
Query: 95 SNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKL 154
R R LV++PTR+L +QV V +A ++ LAVG + + + L P +
Sbjct: 252 KPRQSPVTRVLVLVPTRELGIQVHSVTKQLAQFCNITTCLAVGGLDVKSQEAALRAAPDI 311
Score = 120 (47.3 bits), Expect = 4.3e-18, Sum P(3) = 4.3e-18
Identities = 22/56 (39%), Positives = 39/56 (69%)
Query: 169 LQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQL 224
L++A DIL+ATPGRL+DH++ F L + L++DE DR+L E ++ + ++++
Sbjct: 305 LRAAPDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRM 360
Score = 69 (29.3 bits), Expect = 4.3e-18, Sum P(3) = 4.3e-18
Identities = 25/107 (23%), Positives = 48/107 (44%)
Query: 270 MVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKL--KPLYLVALL 327
M+ SAT+T + LA + L +P+ + P + + I ++ + + ALL
Sbjct: 368 MLFSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFVRIRPNREGDREAIVAALL 427
Query: 328 QSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVR 374
+ ++FT + + HR+ LL G +++ E G Q+ R
Sbjct: 428 TRTFTDHVMLFTQTKKQAHRMHILLGLMG---LQVGELHGNLSQTQR 471
>UNIPROTKB|J9P9C6 [details] [associations]
symbol:DDX27 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00550000074997 OMA:TRTFTDH EMBL:AAEX03013992
Ensembl:ENSCAFT00000046251 Uniprot:J9P9C6
Length = 788
Score = 150 (57.9 bits), Expect = 4.8e-18, Sum P(3) = 4.8e-18
Identities = 41/120 (34%), Positives = 63/120 (52%)
Query: 37 PRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL-- 94
P LK A+ MG P+Q A I GL +D+C + TG+GKT ++ALP+++ L
Sbjct: 218 PLLK-AITAMGFKQPTPIQKAC----IPVGLLGKDICACAATGTGKTAAFALPVLERLIY 272
Query: 95 SNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKL 154
R R LV++PTR+L +QV V +A ++ LAVG + + + L P +
Sbjct: 273 KPRQSPVTRVLVLVPTRELGIQVHSVTKQLAQFCNITTCLAVGGLDVKSQEAALRAAPDI 332
Score = 120 (47.3 bits), Expect = 4.8e-18, Sum P(3) = 4.8e-18
Identities = 22/56 (39%), Positives = 39/56 (69%)
Query: 169 LQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQL 224
L++A DIL+ATPGRL+DH++ F L + L++DE DR+L E ++ + ++++
Sbjct: 326 LRAAPDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRM 381
Score = 69 (29.3 bits), Expect = 4.8e-18, Sum P(3) = 4.8e-18
Identities = 25/107 (23%), Positives = 48/107 (44%)
Query: 270 MVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKL--KPLYLVALL 327
M+ SAT+T + LA + L +P+ + P + + I ++ + + ALL
Sbjct: 389 MLFSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFVRIRPNREGDREAIVAALL 448
Query: 328 QSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVR 374
+ ++FT + + HR+ LL G +++ E G Q+ R
Sbjct: 449 TRTFTDHVMLFTQTKKQAHRMHILLGLMG---LQVGELHGNLSQTQR 492
>UNIPROTKB|Q9NY93 [details] [associations]
symbol:DDX56 "Probable ATP-dependent RNA helicase DDX56"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006364 "rRNA
processing" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=TAS] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0003676 GO:GO:0003723 EMBL:CH236960 EMBL:CH471128
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0004004 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K14810 HOGENOM:HOG000253015 OMA:TFLMSAT
CleanEx:HS_DDX21 CTD:54606 HOVERGEN:HBG051334 OrthoDB:EOG47H5PT
EMBL:AJ131712 EMBL:AF247666 EMBL:AL136700 EMBL:AK022774
EMBL:AK315363 EMBL:CR457213 EMBL:AC004938 EMBL:BC001235
IPI:IPI00302281 IPI:IPI00925037 RefSeq:NP_001244118.1
RefSeq:NP_061955.1 UniGene:Hs.654762 ProteinModelPortal:Q9NY93
SMR:Q9NY93 IntAct:Q9NY93 STRING:Q9NY93 PhosphoSite:Q9NY93
DMDM:20139238 SWISS-2DPAGE:Q9NY93 PaxDb:Q9NY93 PRIDE:Q9NY93
DNASU:54606 Ensembl:ENST00000258772 Ensembl:ENST00000431640
GeneID:54606 KEGG:hsa:54606 UCSC:uc003tlg.3 GeneCards:GC07M044571
HGNC:HGNC:18193 HPA:HPA019749 MIM:608023 neXtProt:NX_Q9NY93
PharmGKB:PA134916346 InParanoid:Q9NY93 PhylomeDB:Q9NY93
GenomeRNAi:54606 NextBio:57133 ArrayExpress:Q9NY93 Bgee:Q9NY93
CleanEx:HS_DDX56 Genevestigator:Q9NY93 GermOnline:ENSG00000136271
Uniprot:Q9NY93
Length = 547
Score = 161 (61.7 bits), Expect = 5.7e-18, Sum P(2) = 5.7e-18
Identities = 59/199 (29%), Positives = 97/199 (48%)
Query: 30 DHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALP 89
+H+ LDPRL A+ ++G S +Q ++ I L +DL + TGSGKT +YA+P
Sbjct: 10 EHMG-LDPRLLQAVTDLGWSRPTLIQ----EKAIPLALEGKDLLARARTGSGKTAAYAIP 64
Query: 90 IVQTLSNRAV------RCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIAD 143
++Q L +R + +R LV++PT++LA Q + + +A V +A S+ D
Sbjct: 65 MLQLLLHRKATGPVVEQAVRGLVLVPTKELARQAQSMIQQLATYCARDVRVA-NVSAAED 123
Query: 144 EISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVV 203
+S+ VL E D++V TP R++ H+ + L LVV
Sbjct: 124 SVSQ---------------RAVLMEKP---DVVVGTPSRILSHLQQDSLKLRDSLELLVV 165
Query: 204 DETDRLLREAYQAWLPTVL 222
DE D L ++ L ++L
Sbjct: 166 DEADLLFSFGFEEELKSLL 184
Score = 131 (51.2 bits), Expect = 5.7e-18, Sum P(2) = 5.7e-18
Identities = 32/94 (34%), Positives = 59/94 (62%)
Query: 265 PRLVK-MVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKL-KPLY 322
PR+ + ++SAT +D L +L LH+P+ L E++ P++L+ ++++CE++ K L
Sbjct: 188 PRIYQAFLMSATFNEDVQALKELILHNPVTLKLQESQLPGPDQLQQFQVVCETEEDKFLL 247
Query: 323 LVALLQ-SLGEEKCIVFTSSVESTHRLCTLLNHF 355
L ALL+ SL K ++F +++E ++RL L F
Sbjct: 248 LYALLKLSLIRGKSLLFVNTLERSYRLRLFLEQF 281
>ZFIN|ZDB-GENE-031030-3 [details] [associations]
symbol:ddx49 "DEAD (Asp-Glu-Ala-Asp) box polypeptide
49" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 ZFIN:ZDB-GENE-031030-3 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 KO:K14778
HOVERGEN:HBG100512 CTD:54555 EMBL:BC047834 IPI:IPI00551936
RefSeq:NP_938179.1 UniGene:Dr.77634 ProteinModelPortal:Q7ZUT9
STRING:Q7ZUT9 GeneID:386632 KEGG:dre:386632 InParanoid:Q7ZUT9
NextBio:20813961 ArrayExpress:Q7ZUT9 Uniprot:Q7ZUT9
Length = 468
Score = 135 (52.6 bits), Expect = 8.9e-18, Sum P(3) = 8.9e-18
Identities = 40/111 (36%), Positives = 59/111 (53%)
Query: 44 QNMGISSLFPVQVAVWQETIGPGLFE-RDLCIN-SPTGSGKTLSYALPIVQTLSNRAVRC 101
+ MGIS P V QE P + + RD C+ + TGSGKT ++ LP++Q LS
Sbjct: 18 KQMGISR--PTAV---QEKCIPAILDGRD-CMGCAKTGSGKTAAFVLPVLQKLSEDPYGV 71
Query: 102 LRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRP 152
LV+ PTR+LA Q+ + F + +GL + VG + + EL K+P
Sbjct: 72 F-CLVLTPTRELAYQIAEQFRVLGKPLGLKDCIIVGGMDMVTQGLELSKKP 121
Score = 105 (42.0 bits), Expect = 8.9e-18, Sum P(3) = 8.9e-18
Identities = 20/45 (44%), Positives = 29/45 (64%)
Query: 168 ELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLRE 212
EL ++VATPGRL DHI ++ L + +L++DE DRLL +
Sbjct: 116 ELSKKPHVVVATPGRLADHIRSSDTINLNRIQFLIMDEADRLLEQ 160
Score = 89 (36.4 bits), Expect = 8.9e-18, Sum P(3) = 8.9e-18
Identities = 25/90 (27%), Positives = 46/90 (51%)
Query: 270 MVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQS 329
++ SATLT +L + ++ P F ++ + E L+ ++ K+K YLV L+Q+
Sbjct: 183 LLFSATLTDTLQQLQSIAMNRPFFWEH-KSDVQTVEELDQRFILTPEKVKDAYLVHLIQT 241
Query: 330 LGEE----KCIVFTSSVESTHRLCTLLNHF 355
+E I+FT++ +S L +L F
Sbjct: 242 FQDEHDDWSIIIFTNTCKSCQILTMMLREF 271
>ZFIN|ZDB-GENE-030131-9685 [details] [associations]
symbol:ddx18 "DEAD (Asp-Glu-Ala-Asp) box
polypeptide 18" species:7955 "Danio rerio" [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0030099 "myeloid
cell differentiation" evidence=IMP] [GO:0030097 "hemopoiesis"
evidence=IMP] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 ZFIN:ZDB-GENE-030131-9685
GO:GO:0005524 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 GO:GO:0030099 InterPro:IPR014014
PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959 KO:K13179 CTD:8886
HOVERGEN:HBG105702 EMBL:AY648748 IPI:IPI00492099
RefSeq:NP_001003411.1 UniGene:Dr.24235 ProteinModelPortal:Q6DRL1
STRING:Q6DRL1 PRIDE:Q6DRL1 GeneID:321127 KEGG:dre:321127
InParanoid:Q6DRL1 NextBio:20807243 ArrayExpress:Q6DRL1 Bgee:Q6DRL1
Uniprot:Q6DRL1
Length = 653
Score = 140 (54.3 bits), Expect = 1.3e-17, Sum P(3) = 1.3e-17
Identities = 29/73 (39%), Positives = 46/73 (63%)
Query: 167 QELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTR 226
Q+L + V+ILVATPGRL+DH+ T GF ++L L++DE DR+L ++ L +++L
Sbjct: 278 QKLANGVNILVATPGRLLDHLQNTPGFMFKNLQCLIIDEADRILEVGFEEELKQIIKLLP 337
Query: 227 SDNENR-FSDAST 238
++ FS T
Sbjct: 338 KKRQSMLFSATQT 350
Score = 105 (42.0 bits), Expect = 1.3e-17, Sum P(3) = 1.3e-17
Identities = 32/106 (30%), Positives = 54/106 (50%)
Query: 47 GISSL-FPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAV--RCLR 103
G+ + F + +TI P L RD+ + TGSGKTL++ +P ++ + R
Sbjct: 175 GVKEMGFDTMTEIQHKTIRPLLEGRDVLAAAKTGSGKTLAFLIPSIELIYKLKFMPRNGT 234
Query: 104 ALVVL-PTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISEL 148
++VL PTR+LA+Q V + + GL +G S+ + E +L
Sbjct: 235 GVIVLSPTRELAMQTYGVLKELMTHHVHTYGLIMGGSNRSAEAQKL 280
Score = 88 (36.0 bits), Expect = 1.3e-17, Sum P(3) = 1.3e-17
Identities = 31/107 (28%), Positives = 53/107 (49%)
Query: 270 MVLSATLTQDPNKLAQLDLH-HPLFLTTGETRYKLP-ERLESYKLICESKLKPLYLVALL 327
M+ SAT T+ LA++ L PL++ + + E LE ++C S+ + L L L
Sbjct: 343 MLFSATQTRKVEDLARISLKKEPLYVGVDDNKDTATVEGLEQGYVVCPSEKRFLLLFTFL 402
Query: 328 QSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVR 374
+ ++K +VF SS S LLN+ + + + G Q+Q+ R
Sbjct: 403 KKNRKKKLMVFFSSCMSVKFHYELLNY---IDLPVMAIHGKQKQTKR 446
Score = 47 (21.6 bits), Expect = 1.0e-11, Sum P(3) = 1.0e-11
Identities = 13/40 (32%), Positives = 24/40 (60%)
Query: 116 QVKDVF--AAIAPAVGLSVGLAVGQSSIADEISELIKRPK 153
+VKDV + +A +V + Q S++DE++E ++PK
Sbjct: 37 EVKDVLDESEVASDSAPNV-IEEQQQSVSDEVNETSQKPK 75
>CGD|CAL0001062 [details] [associations]
symbol:orf19.3704 species:5476 "Candida albicans" [GO:0005730
"nucleolus" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
[GO:0030687 "preribosome, large subunit precursor" evidence=IEA]
[GO:0000466 "maturation of 5.8S rRNA from tricistronic rRNA
transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA]
[GO:0000463 "maturation of LSU-rRNA from tricistronic rRNA
transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 CGD:CAL0001062 GO:GO:0005524 GO:GO:0005730
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
EMBL:AACQ01000217 EMBL:AACQ01000216 GO:GO:0006364 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
RefSeq:XP_711043.1 RefSeq:XP_711056.1 ProteinModelPortal:Q59MW2
STRING:Q59MW2 GeneID:3647328 GeneID:3647350 KEGG:cal:CaO19.11188
KEGG:cal:CaO19.3704 KO:K14807 Uniprot:Q59MW2
Length = 606
Score = 165 (63.1 bits), Expect = 2.4e-17, Sum P(2) = 2.4e-17
Identities = 58/224 (25%), Positives = 104/224 (46%)
Query: 13 PWMRSPVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFER-- 70
P SP D F D L +K L+ MG + F VQ++V + P + +
Sbjct: 160 PQYASPSDKKAFTDFKLSSF-----MIK-NLEKMGFTEAFSVQISVLNMML-PEIEAQKL 212
Query: 71 ------DLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAI 124
D+ +N+ TGSGKTL+Y++PI+++L R V +R ++++PT+ L QVK +
Sbjct: 213 KPDRVGDILVNASTGSGKTLAYSIPIIESLYRRVVPRVRVIILVPTKPLINQVKSTLLQL 272
Query: 125 APAVGLSVGLAVGQSSIADEISELIKR-PKLEAGICYDPEDVLQELQSAVDILVATPGRL 183
+ L + SI DE L K P + I P +++ L + L + +
Sbjct: 273 SSGTNLQIAALKNDVSINDEKDSLTKSVPDI---IVSTPGRLVEHLLNDSINLSSLQYLI 329
Query: 184 MDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRS 227
+D + + ++ +++D+ D + A + W +V +L S
Sbjct: 330 IDEADRLLNQSFQNWSNVLLDKIDSQINIA-EVWKLSVQKLVFS 372
Score = 122 (48.0 bits), Expect = 2.4e-17, Sum P(2) = 2.4e-17
Identities = 35/106 (33%), Positives = 57/106 (53%)
Query: 269 KMVLSATLTQDPNKLAQLDLHHPLFLTTGETR------YKLPERLESYKL---ICESKLK 319
K+V SATLT D KL+ L ++P + +++ + +P L +K+ + ++ LK
Sbjct: 368 KLVFSATLTTDAGKLSSLKFYNPRLIIVNDSKQLVNEIFTVPVTLSEFKIHLGVAKNSLK 427
Query: 320 PLYLVALLQSLGE-EKCIVFTSSVESTHRLCTLL-NHFGELRIKIK 363
PL L L S + ++FT S ES+ RL LL + F +L I +K
Sbjct: 428 PLILTKFLISTNKLSNVLIFTKSNESSIRLTELLISLFQKLSINLK 473
>UNIPROTKB|F1NQV5 [details] [associations]
symbol:DDX27 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00550000074997 EMBL:AADN02019007 IPI:IPI00579774
Ensembl:ENSGALT00000039062 ArrayExpress:F1NQV5 Uniprot:F1NQV5
Length = 758
Score = 142 (55.0 bits), Expect = 4.4e-17, Sum P(3) = 4.4e-17
Identities = 46/142 (32%), Positives = 70/142 (49%)
Query: 22 SLFEDCPL--DHLPCLD-----PRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCI 74
S FED D+L D P LK A+ +G P+Q A I GL +D+C
Sbjct: 168 SFFEDASEYDDNLSFQDMNLSRPLLK-AITALGFKQPTPIQKAC----IPVGLLGKDICA 222
Query: 75 NSPTGSGKTLSYALPIVQTL--SNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSV 132
+ TG+GKT ++ LP+++ L R R LV++PTR+L +QV V +A ++
Sbjct: 223 CAATGTGKTAAFILPVLERLIYKPRQAPITRVLVLVPTRELGIQVHSVTKQLAQFSSVTT 282
Query: 133 GLAVGQSSIADEISELIKRPKL 154
LAVG + + + L P +
Sbjct: 283 CLAVGGLDVKTQEAALRSGPDI 304
Score = 121 (47.7 bits), Expect = 4.4e-17, Sum P(3) = 4.4e-17
Identities = 27/71 (38%), Positives = 43/71 (60%)
Query: 169 LQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQL-TRS 227
L+S DIL+ATPGRL+DH++ F L + L++DE DR+L E ++ + +++L +R
Sbjct: 298 LRSGPDILIATPGRLIDHLHNCPSFHLSSVEVLILDEADRMLDEYFEEQMKEIIRLCSRH 357
Query: 228 DNENRFSDAST 238
FS T
Sbjct: 358 RQTMLFSATMT 368
Score = 67 (28.6 bits), Expect = 4.4e-17, Sum P(3) = 4.4e-17
Identities = 25/107 (23%), Positives = 48/107 (44%)
Query: 270 MVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKL--KPLYLVALL 327
M+ SAT+T++ LA + L +P + P + + I ++ + + ALL
Sbjct: 361 MLFSATMTEEVKDLASVSLKNPTRIFVNSNTDVAPFLRQEFIRIRPNREGDREAIVSALL 420
Query: 328 QSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVR 374
+ ++FT + + HR+ LL G +++ E G Q+ R
Sbjct: 421 TRTFPDHVMLFTQTKKQAHRMHILLGLMG---LRVGELHGNLSQAQR 464
>UNIPROTKB|G3V6M5 [details] [associations]
symbol:Ddx56 "Protein Ddx56" species:10116 "Rattus
norvegicus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 RGD:1303195
GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
OMA:TFLMSAT GeneTree:ENSGT00550000074946 EMBL:CH473963
UniGene:Rn.39458 Ensembl:ENSRNOT00000006642 Uniprot:G3V6M5
Length = 546
Score = 155 (59.6 bits), Expect = 4.4e-17, Sum P(2) = 4.4e-17
Identities = 58/199 (29%), Positives = 97/199 (48%)
Query: 30 DHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALP 89
+H+ LDPRL A+ ++G S +Q ++ I L +DL + TGSGKT +YA+P
Sbjct: 10 EHMG-LDPRLLQAVTDLGWSRPTLIQ----EKAIPLALEGKDLLARARTGSGKTAAYAIP 64
Query: 90 IVQTLSNRAV------RCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIAD 143
++Q L ++ + +R LV++PT++LA Q + + +A V +A S+ D
Sbjct: 65 MLQLLLHKKATGPVMEQAVRGLVLVPTKELARQAQSMIQQLASYCARDVRVA-NVSAAED 123
Query: 144 EISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVV 203
S+ VL E D++V TP R+++H+ + L LVV
Sbjct: 124 SASQ---------------RAVLMEKP---DVVVGTPSRILNHLQQKNLKLRDSLELLVV 165
Query: 204 DETDRLLREAYQAWLPTVL 222
DE D L ++ L ++L
Sbjct: 166 DEADLLFSFGFEDELKSLL 184
Score = 129 (50.5 bits), Expect = 4.4e-17, Sum P(2) = 4.4e-17
Identities = 32/94 (34%), Positives = 58/94 (61%)
Query: 265 PRLVK-MVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKL-KPLY 322
PR+ + ++SAT +D L +L LH+P+ L E++ P++L+ ++++CE++ K L
Sbjct: 188 PRIYQAFLMSATFNEDVQTLKELVLHNPVTLKLQESQLPGPDQLQQFQVVCETEEDKFLL 247
Query: 323 LVALLQ-SLGEEKCIVFTSSVESTHRLCTLLNHF 355
L ALL+ SL K ++F +++E +RL L F
Sbjct: 248 LYALLKLSLIRGKALLFVNTLERGYRLRLFLEQF 281
>UNIPROTKB|Q3SZ40 [details] [associations]
symbol:DDX56 "Probable ATP-dependent RNA helicase DDX56"
species:9913 "Bos taurus" [GO:0005730 "nucleolus" evidence=IEA]
[GO:0006364 "rRNA processing" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K14810 HOGENOM:HOG000253015 OMA:TFLMSAT
GeneTree:ENSGT00550000074946 HSSP:P60842 EMBL:BC103169
IPI:IPI00695179 RefSeq:NP_001029501.1 UniGene:Bt.48952
ProteinModelPortal:Q3SZ40 STRING:Q3SZ40 PRIDE:Q3SZ40
Ensembl:ENSBTAT00000014014 GeneID:508728 KEGG:bta:508728 CTD:54606
HOVERGEN:HBG051334 InParanoid:Q3SZ40 OrthoDB:EOG47H5PT
NextBio:20868656 Uniprot:Q3SZ40
Length = 546
Score = 153 (58.9 bits), Expect = 4.7e-17, Sum P(2) = 4.7e-17
Identities = 58/204 (28%), Positives = 98/204 (48%)
Query: 25 EDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTL 84
E +H+ LD RL A+ ++G S +Q ++ I L +DL + TGSGKT
Sbjct: 5 ESLGFEHMG-LDHRLLQAVTDLGWSRPTLIQ----EKAIPLALEGKDLLARARTGSGKTA 59
Query: 85 SYALPIVQTLSNRAV------RCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQ 138
+YA+P++Q L +R + +RALV++PT++LA Q + + +A + +A
Sbjct: 60 AYAIPMLQLLLHRKATGPVVEQAVRALVLVPTKELARQAQSMIQQLAAYCARDIRVA-NV 118
Query: 139 SSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHL 198
S+ D S+ VL E D++V TP R+++H+ + +
Sbjct: 119 SAAEDSASQ---------------RAVLMEKP---DVVVGTPSRILNHLQQDNLKLRDSM 160
Query: 199 CYLVVDETDRLLREAYQAWLPTVL 222
LVVDE D L ++ L ++L
Sbjct: 161 ELLVVDEADLLFSFGFEEELKSLL 184
Score = 131 (51.2 bits), Expect = 4.7e-17, Sum P(2) = 4.7e-17
Identities = 32/94 (34%), Positives = 59/94 (62%)
Query: 265 PRLVK-MVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKL-KPLY 322
PR+ + ++SAT +D L +L LH+P+ L E++ P++L+ ++++CE++ K L
Sbjct: 188 PRIYQAFLMSATFNEDVQALKELVLHNPVTLKLQESQLPGPDQLQQFQVVCETEEDKFLL 247
Query: 323 LVALLQ-SLGEEKCIVFTSSVESTHRLCTLLNHF 355
L ALL+ SL K ++F +++E ++RL L F
Sbjct: 248 LYALLKLSLIRGKSLLFVNTLERSYRLRLFLEQF 281
>UNIPROTKB|Q5ZLB0 [details] [associations]
symbol:DDX47 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0006364 "rRNA processing" evidence=IEA]
[GO:0006915 "apoptotic process" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0006915
GO:GO:0005730 GO:GO:0008380 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268802 GeneTree:ENSGT00670000098028 CTD:51202
HOVERGEN:HBG100512 KO:K14777 OMA:IFIPSKF OrthoDB:EOG4TXBRS
EMBL:AADN02006011 EMBL:AADN02006010 EMBL:AJ719824 IPI:IPI00584081
RefSeq:NP_001007854.1 UniGene:Gga.13941 SMR:Q5ZLB0 STRING:Q5ZLB0
Ensembl:ENSGALT00000019245 GeneID:417959 KEGG:gga:417959
InParanoid:Q5ZLB0 NextBio:20821184 Uniprot:Q5ZLB0
Length = 453
Score = 147 (56.8 bits), Expect = 4.7e-17, Sum P(2) = 4.7e-17
Identities = 38/102 (37%), Positives = 58/102 (56%)
Query: 53 PVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRD 112
P ++ V E I L RD+ + TGSGKT ++ALPI+Q L + R L ALV+ PTR+
Sbjct: 48 PTKIQV--EAIPVALQGRDIIGLAETGSGKTGAFALPILQALLDAPQR-LFALVLTPTRE 104
Query: 113 LALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKL 154
LA Q+ + F A+ ++G+ + VG + L K+P +
Sbjct: 105 LAFQISEQFEALGSSIGVHSAVIVGGIDSMSQSLALAKKPHI 146
Score = 135 (52.6 bits), Expect = 4.7e-17, Sum P(2) = 4.7e-17
Identities = 48/158 (30%), Positives = 77/158 (48%)
Query: 175 ILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFS 234
I++ATPGRL+DH+ T+GF L L +LV+DE DR+L ++ + +L++ D +
Sbjct: 146 IIIATPGRLVDHLENTKGFNLRALKFLVMDEADRILNMDFETEVDKILKVIPRDRK---- 201
Query: 235 DASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFL 294
TFL SA + K +++ ++R P VK +S+ Q KL Q + P
Sbjct: 202 ---TFLFSATMT-KQVQK--LQRAALKNP----VKCAVSSKY-QTVEKLQQYYIFIPSKF 250
Query: 295 TTGETRYKLPERL-ESYKLICESKLKPLYLVALLQSLG 331
Y L E S+ + C + LL++LG
Sbjct: 251 KDSYLVYILNELAGNSFMIFCSTCNNTQRTALLLRNLG 288
Score = 122 (48.0 bits), Expect = 1.1e-15, Sum P(2) = 1.1e-15
Identities = 32/96 (33%), Positives = 49/96 (51%)
Query: 262 KPYPRLVKMVL-SATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKP 320
K PR K L SAT+T+ KL + L +P+ ++Y+ E+L+ Y + SK K
Sbjct: 194 KVIPRDRKTFLFSATMTKQVQKLQRAALKNPVKCAVS-SKYQTVEKLQQYYIFIPSKFKD 252
Query: 321 LYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFG 356
YLV +L L ++F S+ +T R LL + G
Sbjct: 253 SYLVYILNELAGNSFMIFCSTCNNTQRTALLLRNLG 288
>SGD|S000001107 [details] [associations]
symbol:RRP3 "Protein involved in rRNA processing"
species:4932 "Saccharomyces cerevisiae" [GO:0042254 "ribosome
biogenesis" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=IDA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000462 "maturation of
SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA,
LSU-rRNA)" evidence=IMP] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0008186 "RNA-dependent ATPase activity"
evidence=IDA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IC] [GO:0006364 "rRNA processing"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 SGD:S000001107 GO:GO:0005524
GO:GO:0005730 EMBL:BK006934 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 EMBL:U00061 HOGENOM:HOG000268802
GO:GO:0000462 GeneTree:ENSGT00670000098028 KO:K14777 OMA:IFIPSKF
OrthoDB:EOG4ZPJ3P EMBL:AY389302 EMBL:AY389303 PIR:S46713
RefSeq:NP_011932.2 ProteinModelPortal:P38712 SMR:P38712
DIP:DIP-6533N IntAct:P38712 MINT:MINT-518716 STRING:P38712
PaxDb:P38712 PeptideAtlas:P38712 EnsemblFungi:YHR065C GeneID:856462
KEGG:sce:YHR065C CYGD:YHR065c NextBio:982111 Genevestigator:P38712
GermOnline:YHR065C Uniprot:P38712
Length = 501
Score = 146 (56.5 bits), Expect = 6.8e-17, Sum P(2) = 6.8e-17
Identities = 37/120 (30%), Positives = 65/120 (54%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
L P L A +N+ S P+Q + I P L D+ + TGSGKT ++A+PI+ L
Sbjct: 88 LVPELIQACKNLNYSKPTPIQ----SKAIPPALEGHDIIGLAQTGSGKTAAFAIPILNRL 143
Query: 95 SNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKL 154
+ A ++ PTR+LA Q+K+ F ++ +G+ VG ++ D+ +L+++P +
Sbjct: 144 WHDQ-EPYYACILAPTRELAQQIKETFDSLGSLMGVRSTCIVGGMNMMDQARDLMRKPHI 202
Score = 136 (52.9 bits), Expect = 6.8e-17, Sum P(2) = 6.8e-17
Identities = 28/75 (37%), Positives = 45/75 (60%)
Query: 164 DVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQ 223
D ++L I++ATPGRLMDH+ T+GF+L L +LV+DE DRLL + L +L+
Sbjct: 191 DQARDLMRKPHIIIATPGRLMDHLENTKGFSLRKLKFLVMDEADRLLDMEFGPVLDRILK 250
Query: 224 LTRSDNENRFSDAST 238
+ + + ++T
Sbjct: 251 IIPTQERTTYLFSAT 265
Score = 84 (34.6 bits), Expect = 1.7e-11, Sum P(2) = 1.7e-11
Identities = 26/99 (26%), Positives = 44/99 (44%)
Query: 255 VERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLIC 314
++R K P + SAT+T +KL + L +P+ +Y+ + L ++
Sbjct: 245 LDRILKIIPTQERTTYLFSATMTSKIDKLQRASLTNPVKCAVSN-KYQTVDTLVQTLMVV 303
Query: 315 ESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLN 353
LK YL+ LL + I+FT + + RL L N
Sbjct: 304 PGGLKNTYLIYLLNEFIGKTMIIFTRTKANAERLSGLCN 342
>MGI|MGI:1277172 [details] [associations]
symbol:Ddx56 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 56"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0006364 "rRNA processing" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0042254 "ribosome
biogenesis" evidence=IEA] InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
MGI:MGI:1277172 GO:GO:0005524 GO:GO:0005730 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K14810 HOGENOM:HOG000253015 OMA:TFLMSAT
GeneTree:ENSGT00550000074946 CTD:54606 HOVERGEN:HBG051334
OrthoDB:EOG47H5PT EMBL:AK011136 EMBL:AK077514 EMBL:BC018291
IPI:IPI00132957 RefSeq:NP_080814.1 UniGene:Mm.29810
ProteinModelPortal:Q9D0R4 SMR:Q9D0R4 STRING:Q9D0R4
PhosphoSite:Q9D0R4 PaxDb:Q9D0R4 PRIDE:Q9D0R4
Ensembl:ENSMUST00000004507 GeneID:52513 KEGG:mmu:52513
InParanoid:Q9D0R4 ChiTaRS:DDX56 NextBio:309069 Bgee:Q9D0R4
CleanEx:MM_DDX56 Genevestigator:Q9D0R4
GermOnline:ENSMUSG00000004393 Uniprot:Q9D0R4
Length = 546
Score = 153 (58.9 bits), Expect = 7.6e-17, Sum P(2) = 7.6e-17
Identities = 58/199 (29%), Positives = 97/199 (48%)
Query: 30 DHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALP 89
+H+ LDPRL A+ ++G S +Q ++ I L +DL + TGSGKT +YA+P
Sbjct: 10 EHMG-LDPRLLQAVTDLGWSRPTLIQ----EKAIPLALEGKDLLARARTGSGKTAAYAIP 64
Query: 90 IVQTLSNRAV------RCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIAD 143
++Q+L ++ + +R LV++PT++LA Q + + +A V +A S+ D
Sbjct: 65 MLQSLLHKKATGPVMEQAVRGLVLVPTKELARQAQAMIQQLAAYCARDVRVA-NVSAAED 123
Query: 144 EISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVV 203
S+ VL E D++V TP R++ H+ + L LVV
Sbjct: 124 SASQ---------------RAVLMEKP---DVVVGTPSRVLSHLQQNTLKLRDSLELLVV 165
Query: 204 DETDRLLREAYQAWLPTVL 222
DE D L ++ L ++L
Sbjct: 166 DEADLLFSFGFEDELKSLL 184
Score = 129 (50.5 bits), Expect = 7.6e-17, Sum P(2) = 7.6e-17
Identities = 32/94 (34%), Positives = 58/94 (61%)
Query: 265 PRLVK-MVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKL-KPLY 322
PR+ + ++SAT +D L +L LH+P+ L E++ P++L+ ++++CE++ K L
Sbjct: 188 PRIYQAFLMSATFNEDVQTLKELVLHNPVTLKLQESQLPGPDQLQQFQVVCETEEDKFLL 247
Query: 323 LVALLQ-SLGEEKCIVFTSSVESTHRLCTLLNHF 355
L ALL+ SL K ++F +++E +RL L F
Sbjct: 248 LYALLKLSLIRGKALLFVNTLERGYRLRLFLEQF 281
>MGI|MGI:1915005 [details] [associations]
symbol:Ddx47 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 47"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005730 "nucleolus"
evidence=ISO] [GO:0006364 "rRNA processing" evidence=ISO]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0006915 "apoptotic
process" evidence=ISO] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0008380 "RNA splicing" evidence=ISO]
[GO:0016787 "hydrolase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 MGI:MGI:1915005
GO:GO:0005524 GO:GO:0006915 GO:GO:0005730 GO:GO:0008380
GO:GO:0006397 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268802
GeneTree:ENSGT00670000098028 CTD:51202 HOVERGEN:HBG100512 KO:K14777
OMA:IFIPSKF OrthoDB:EOG4TXBRS ChiTaRS:DDX47 EMBL:AK010310
EMBL:AK076982 IPI:IPI00187240 RefSeq:NP_080636.2 UniGene:Mm.166524
ProteinModelPortal:Q9CWX9 SMR:Q9CWX9 IntAct:Q9CWX9
PhosphoSite:Q9CWX9 PaxDb:Q9CWX9 PRIDE:Q9CWX9
Ensembl:ENSMUST00000032326 GeneID:67755 KEGG:mmu:67755
InParanoid:Q9CWX9 NextBio:325481 Bgee:Q9CWX9 CleanEx:MM_DDX47
Genevestigator:Q9CWX9 GermOnline:ENSMUSG00000030204 Uniprot:Q9CWX9
Length = 455
Score = 141 (54.7 bits), Expect = 8.9e-17, Sum P(2) = 8.9e-17
Identities = 36/102 (35%), Positives = 56/102 (54%)
Query: 53 PVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRD 112
P ++ + E I L RD+ + TGSGKT ++ALPI+ L R L ALV+ PTR+
Sbjct: 47 PTKIQI--EAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETPQR-LFALVLTPTRE 103
Query: 113 LALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKL 154
LA Q+ + F A+ ++G+ + VG + L K+P +
Sbjct: 104 LAFQISEQFEALGSSIGVQCAVIVGGIDSMSQSLALAKKPHI 145
Score = 139 (54.0 bits), Expect = 8.9e-17, Sum P(2) = 8.9e-17
Identities = 56/182 (30%), Positives = 86/182 (47%)
Query: 175 ILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFS 234
I++ATPGRL+DH+ T+GF L L YLV+DE DR+L ++ + +L++ D +
Sbjct: 145 IVIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRK---- 200
Query: 235 DASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFL 294
TFL SA + K +++ ++R P VK +S+ Q KL Q L P
Sbjct: 201 ---TFLFSATMT-KKVQK--LQRAALKNP----VKCAVSSKY-QTVEKLQQYYLFIPSKF 249
Query: 295 TTGETRYKLPERL-ESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLN 353
Y L E S+ + C + LL++LG I + + RL +L N
Sbjct: 250 KDTYLVYILNELAGNSFMIFCSTCNNTQRTALLLRNLGFT-AIPLHGQMSQSKRLGSL-N 307
Query: 354 HF 355
F
Sbjct: 308 KF 309
Score = 125 (49.1 bits), Expect = 2.5e-15, Sum P(2) = 2.5e-15
Identities = 38/114 (33%), Positives = 55/114 (48%)
Query: 262 KPYPRLVKMVL-SATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKP 320
K PR K L SAT+T+ KL + L +P+ ++Y+ E+L+ Y L SK K
Sbjct: 193 KVIPRDRKTFLFSATMTKKVQKLQRAALKNPVKCAVS-SKYQTVEKLQQYYLFIPSKFKD 251
Query: 321 LYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVR 374
YLV +L L ++F S+ +T R LL + G I + G QS R
Sbjct: 252 TYLVYILNELAGNSFMIFCSTCNNTQRTALLLRNLGFTAIPLH---GQMSQSKR 302
>UNIPROTKB|G3V727 [details] [associations]
symbol:Ddx47 "Protein Ddx47" species:10116 "Rattus
norvegicus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0006364 "rRNA processing" evidence=IEA]
[GO:0006915 "apoptotic process" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 EMBL:CH473964
GeneTree:ENSGT00670000098028 CTD:51202 KO:K14777 OMA:IFIPSKF
RefSeq:NP_001015005.2 UniGene:Rn.73790 Ensembl:ENSRNOT00000011096
GeneID:297685 KEGG:rno:297685 RGD:1310437 NextBio:642541
Uniprot:G3V727
Length = 455
Score = 141 (54.7 bits), Expect = 8.9e-17, Sum P(2) = 8.9e-17
Identities = 36/102 (35%), Positives = 56/102 (54%)
Query: 53 PVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRD 112
P ++ + E I L RD+ + TGSGKT ++ALPI+ L R L ALV+ PTR+
Sbjct: 47 PTKIQI--EAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETPQR-LFALVLTPTRE 103
Query: 113 LALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKL 154
LA Q+ + F A+ ++G+ + VG + L K+P +
Sbjct: 104 LAFQISEQFEALGSSIGVQCAVIVGGIDSMSQSLALAKKPHI 145
Score = 139 (54.0 bits), Expect = 8.9e-17, Sum P(2) = 8.9e-17
Identities = 56/182 (30%), Positives = 86/182 (47%)
Query: 175 ILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFS 234
I++ATPGRL+DH+ T+GF L L YLV+DE DR+L ++ + +L++ D +
Sbjct: 145 IVIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRK---- 200
Query: 235 DASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFL 294
TFL SA + K +++ ++R P VK +S+ Q KL Q L P
Sbjct: 201 ---TFLFSATMT-KKVQK--LQRAALKNP----VKCAVSSKY-QTVEKLQQYYLFIPSKF 249
Query: 295 TTGETRYKLPERL-ESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLN 353
Y L E S+ + C + LL++LG I + + RL +L N
Sbjct: 250 KDTYLVYILNELAGNSFMIFCSTCNNTQRTALLLRNLGFT-AIPLHGQMSQSKRLGSL-N 307
Query: 354 HF 355
F
Sbjct: 308 KF 309
Score = 125 (49.1 bits), Expect = 2.5e-15, Sum P(2) = 2.5e-15
Identities = 38/114 (33%), Positives = 55/114 (48%)
Query: 262 KPYPRLVKMVL-SATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKP 320
K PR K L SAT+T+ KL + L +P+ ++Y+ E+L+ Y L SK K
Sbjct: 193 KVIPRDRKTFLFSATMTKKVQKLQRAALKNPVKCAVS-SKYQTVEKLQQYYLFIPSKFKD 251
Query: 321 LYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVR 374
YLV +L L ++F S+ +T R LL + G I + G QS R
Sbjct: 252 TYLVYILNELAGNSFMIFCSTCNNTQRTALLLRNLGFTAIPLH---GQMSQSKR 302
>UNIPROTKB|I3L976 [details] [associations]
symbol:DDX47 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0008380 "RNA splicing" evidence=IEA] [GO:0006915
"apoptotic process" evidence=IEA] [GO:0006364 "rRNA processing"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0006915
GO:GO:0005730 GO:GO:0008380 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00670000098028
OMA:IFIPSKF Ensembl:ENSSSCT00000025539 Uniprot:I3L976
Length = 456
Score = 141 (54.7 bits), Expect = 9.0e-17, Sum P(2) = 9.0e-17
Identities = 36/102 (35%), Positives = 56/102 (54%)
Query: 53 PVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRD 112
P ++ + E I L RD+ + TGSGKT ++ALPI+ L R L ALV+ PTR+
Sbjct: 46 PTKIQI--EAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETPQR-LFALVLTPTRE 102
Query: 113 LALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKL 154
LA Q+ + F A+ ++G+ + VG + L K+P +
Sbjct: 103 LAFQISEQFEALGSSIGVQCAVIVGGIDSMSQSLALAKKPHI 144
Score = 139 (54.0 bits), Expect = 9.0e-17, Sum P(2) = 9.0e-17
Identities = 56/182 (30%), Positives = 86/182 (47%)
Query: 175 ILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFS 234
I++ATPGRL+DH+ T+GF L L YLV+DE DR+L ++ + +L++ D +
Sbjct: 144 IVIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRK---- 199
Query: 235 DASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFL 294
TFL SA + K +++ ++R P VK +S+ Q KL Q L P
Sbjct: 200 ---TFLFSATMT-KKVQK--LQRAALKNP----VKCAVSSKY-QTVEKLQQYYLFIPSKF 248
Query: 295 TTGETRYKLPERL-ESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLN 353
Y L E S+ + C + LL++LG I + + RL +L N
Sbjct: 249 KDTYLVYILNELAGNSFMIFCSTCNNTQRTALLLRNLGFT-AIPLHGQMSQSKRLGSL-N 306
Query: 354 HF 355
F
Sbjct: 307 KF 308
Score = 125 (49.1 bits), Expect = 2.6e-15, Sum P(2) = 2.6e-15
Identities = 38/114 (33%), Positives = 55/114 (48%)
Query: 262 KPYPRLVKMVL-SATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKP 320
K PR K L SAT+T+ KL + L +P+ ++Y+ E+L+ Y L SK K
Sbjct: 192 KVIPRDRKTFLFSATMTKKVQKLQRAALKNPVKCAVS-SKYQTVEKLQQYYLFIPSKFKD 250
Query: 321 LYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVR 374
YLV +L L ++F S+ +T R LL + G I + G QS R
Sbjct: 251 TYLVYILNELAGNSFMIFCSTCNNTQRTALLLRNLGFTAIPLH---GQMSQSKR 301
>UNIPROTKB|Q29S22 [details] [associations]
symbol:DDX47 "Probable ATP-dependent RNA helicase DDX47"
species:9913 "Bos taurus" [GO:0005730 "nucleolus" evidence=ISS]
[GO:0008380 "RNA splicing" evidence=ISS] [GO:0006915 "apoptotic
process" evidence=ISS] [GO:0006364 "rRNA processing" evidence=ISS]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0006915 GO:GO:0005730
GO:GO:0008380 GO:GO:0006397 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268802 GeneTree:ENSGT00670000098028 EMBL:BC113207
IPI:IPI00688068 RefSeq:NP_001039850.1 UniGene:Bt.23258
ProteinModelPortal:Q29S22 SMR:Q29S22 PRIDE:Q29S22
Ensembl:ENSBTAT00000003058 GeneID:534721 KEGG:bta:534721 CTD:51202
HOVERGEN:HBG100512 InParanoid:Q29S22 KO:K14777 OMA:IFIPSKF
OrthoDB:EOG4TXBRS NextBio:20876515 Uniprot:Q29S22
Length = 457
Score = 141 (54.7 bits), Expect = 9.1e-17, Sum P(2) = 9.1e-17
Identities = 36/102 (35%), Positives = 56/102 (54%)
Query: 53 PVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRD 112
P ++ + E I L RD+ + TGSGKT ++ALPI+ L R L ALV+ PTR+
Sbjct: 49 PTKIQI--EAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETPQR-LFALVLTPTRE 105
Query: 113 LALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKL 154
LA Q+ + F A+ ++G+ + VG + L K+P +
Sbjct: 106 LAFQISEQFEALGSSIGVQCAVIVGGIDSMSQSLALAKKPHI 147
Score = 139 (54.0 bits), Expect = 9.1e-17, Sum P(2) = 9.1e-17
Identities = 56/182 (30%), Positives = 86/182 (47%)
Query: 175 ILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFS 234
I++ATPGRL+DH+ T+GF L L YLV+DE DR+L ++ + +L++ D +
Sbjct: 147 IVIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRK---- 202
Query: 235 DASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFL 294
TFL SA + K +++ ++R P VK +S+ Q KL Q L P
Sbjct: 203 ---TFLFSATMT-KKVQK--LQRAALKNP----VKCAVSSKY-QTVEKLQQYYLFIPSKF 251
Query: 295 TTGETRYKLPERL-ESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLN 353
Y L E S+ + C + LL++LG I + + RL +L N
Sbjct: 252 KDTYLVYILNELAGNSFMIFCSTCNNTQRTALLLRNLGFT-AIPLHGQMSQSKRLGSL-N 309
Query: 354 HF 355
F
Sbjct: 310 KF 311
Score = 125 (49.1 bits), Expect = 2.6e-15, Sum P(2) = 2.6e-15
Identities = 38/114 (33%), Positives = 55/114 (48%)
Query: 262 KPYPRLVKMVL-SATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKP 320
K PR K L SAT+T+ KL + L +P+ ++Y+ E+L+ Y L SK K
Sbjct: 195 KVIPRDRKTFLFSATMTKKVQKLQRAALKNPVKCAVS-SKYQTVEKLQQYYLFIPSKFKD 253
Query: 321 LYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVR 374
YLV +L L ++F S+ +T R LL + G I + G QS R
Sbjct: 254 TYLVYILNELAGNSFMIFCSTCNNTQRTALLLRNLGFTAIPLH---GQMSQSKR 304
>UNIPROTKB|E2R316 [details] [associations]
symbol:DDX55 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313
Pfam:PF13959 Ensembl:ENSCAFT00000035837 Uniprot:E2R316
Length = 483
Score = 184 (69.8 bits), Expect = 1.1e-16, Sum P(2) = 1.1e-16
Identities = 71/221 (32%), Positives = 109/221 (49%)
Query: 30 DHLPC-LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYAL 88
+ LP L P++ AL +G + PVQ A TI + +D+ + TGSGKTL++ +
Sbjct: 10 ESLPTQLHPQVLGALGQLGFPHMTPVQSA----TIPLFMKNKDVAAEAVTGSGKTLAFVI 65
Query: 89 PIVQTLSNRAVRCLR----ALVVLPTRDLALQVKDVFAAIAPAVG-LSVGLAVGQSSIAD 143
PI++ L R + + A+++ PTR+LA+QV +V A + S L +G + AD
Sbjct: 66 PILEILLRREEKLKKNQVGAIIITPTRELAIQVDEVLAHFTKSFPQFSQILWIGGRNPAD 125
Query: 144 EISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINA-TRGFTL----EHL 198
++S R K + G +I+VATPGRL D G L + L
Sbjct: 126 DVS----RFKEQGG----------------NIIVATPGRLEDMFRRKVEGLDLASCVKSL 165
Query: 199 CYLVVDETDRLLREAYQAWLPTVLQ-LTRSDNENRFSDAST 238
LV+DE DRLL ++A + T+L+ L + FS T
Sbjct: 166 EVLVLDEADRLLDMGFEASINTILEFLPKQRRTGLFSATQT 206
Score = 91 (37.1 bits), Expect = 1.1e-16, Sum P(2) = 1.1e-16
Identities = 24/77 (31%), Positives = 43/77 (55%)
Query: 271 VLSATLTQDPNKLAQLDLHHPLFLTTGE------TRYKLPERLESYKLICESKLKPLYLV 324
+ SAT TQ+ L + L +P+ ++ E + K P RLE+Y ++C++ K LV
Sbjct: 200 LFSATQTQEVESLVRAGLRNPVRISVKEKGVAASSTQKTPSRLENYYMVCKADEKFNQLV 259
Query: 325 ALLQSLGEEKCIVFTSS 341
L++ +EK ++F S+
Sbjct: 260 HFLRNHKQEKHLIFFST 276
>UNIPROTKB|E2RN03 [details] [associations]
symbol:DDX47 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0006915 "apoptotic process" evidence=IEA] [GO:0006364 "rRNA
processing" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0006915
GO:GO:0005730 GO:GO:0008380 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00670000098028
OMA:IFIPSKF EMBL:AAEX03015248 Ensembl:ENSCAFT00000020996
NextBio:20853120 Uniprot:E2RN03
Length = 482
Score = 140 (54.3 bits), Expect = 1.4e-16, Sum P(2) = 1.4e-16
Identities = 36/102 (35%), Positives = 56/102 (54%)
Query: 53 PVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRD 112
P ++ + E I L RD+ + TGSGKT ++ALPI+ L R L ALV+ PTR+
Sbjct: 73 PTKIQI--EAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETPQR-LFALVLTPTRE 129
Query: 113 LALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKL 154
LA Q+ + F A+ ++G+ + VG + L K+P +
Sbjct: 130 LAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPHI 171
Score = 139 (54.0 bits), Expect = 1.4e-16, Sum P(2) = 1.4e-16
Identities = 56/182 (30%), Positives = 86/182 (47%)
Query: 175 ILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFS 234
I++ATPGRL+DH+ T+GF L L YLV+DE DR+L ++ + +L++ D +
Sbjct: 171 IVIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRK---- 226
Query: 235 DASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFL 294
TFL SA + K +++ ++R P VK +S+ Q KL Q L P
Sbjct: 227 ---TFLFSATMT-KKVQK--LQRAALKNP----VKCAVSSKY-QTVEKLQQYYLFIPSKF 275
Query: 295 TTGETRYKLPERL-ESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLN 353
Y L E S+ + C + LL++LG I + + RL +L N
Sbjct: 276 KDTYLVYILNELAGNSFMIFCSTCNNTQRTALLLRNLGFT-AIPLHGQMSQSKRLGSL-N 333
Query: 354 HF 355
F
Sbjct: 334 KF 335
Score = 125 (49.1 bits), Expect = 4.1e-15, Sum P(2) = 4.1e-15
Identities = 38/114 (33%), Positives = 55/114 (48%)
Query: 262 KPYPRLVKMVL-SATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKP 320
K PR K L SAT+T+ KL + L +P+ ++Y+ E+L+ Y L SK K
Sbjct: 219 KVIPRDRKTFLFSATMTKKVQKLQRAALKNPVKCAVS-SKYQTVEKLQQYYLFIPSKFKD 277
Query: 321 LYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVR 374
YLV +L L ++F S+ +T R LL + G I + G QS R
Sbjct: 278 TYLVYILNELAGNSFMIFCSTCNNTQRTALLLRNLGFTAIPLH---GQMSQSKR 328
>UNIPROTKB|Q9H0S4 [details] [associations]
symbol:DDX47 "Probable ATP-dependent RNA helicase DDX47"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0006915 "apoptotic process" evidence=IDA]
[GO:0008380 "RNA splicing" evidence=IMP] [GO:0006364 "rRNA
processing" evidence=IMP] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0006915 GO:GO:0005730
GO:GO:0008380 GO:GO:0006397 GO:GO:0003676 GO:GO:0003723
EMBL:CH471094 UniGene:Hs.719938 GermOnline:ENSG00000178878
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268802 CTD:51202 HOVERGEN:HBG100512 KO:K14777
OMA:IFIPSKF EMBL:AF078843 EMBL:AL136666 EMBL:AK054574 EMBL:AK127712
EMBL:AC007215 EMBL:BC009379 EMBL:BC068009 IPI:IPI00023972
IPI:IPI00397372 RefSeq:NP_057439.2 RefSeq:NP_957518.1 PDB:3BER
PDBsum:3BER ProteinModelPortal:Q9H0S4 SMR:Q9H0S4 IntAct:Q9H0S4
MINT:MINT-3056694 STRING:Q9H0S4 PhosphoSite:Q9H0S4 DMDM:52782792
SWISS-2DPAGE:Q9H0S4 PaxDb:Q9H0S4 PRIDE:Q9H0S4 DNASU:51202
Ensembl:ENST00000352940 Ensembl:ENST00000358007 GeneID:51202
KEGG:hsa:51202 UCSC:uc001rav.3 GeneCards:GC12P012966
HGNC:HGNC:18682 HPA:HPA014855 neXtProt:NX_Q9H0S4
PharmGKB:PA134918403 InParanoid:Q9H0S4 PhylomeDB:Q9H0S4
ChiTaRS:DDX47 EvolutionaryTrace:Q9H0S4 GenomeRNAi:51202
NextBio:54238 ArrayExpress:Q9H0S4 Bgee:Q9H0S4 CleanEx:HS_DDX47
Genevestigator:Q9H0S4 Uniprot:Q9H0S4
Length = 455
Score = 140 (54.3 bits), Expect = 1.5e-16, Sum P(2) = 1.5e-16
Identities = 36/102 (35%), Positives = 56/102 (54%)
Query: 53 PVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRD 112
P ++ + E I L RD+ + TGSGKT ++ALPI+ L R L ALV+ PTR+
Sbjct: 47 PTKIQI--EAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETPQR-LFALVLTPTRE 103
Query: 113 LALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKL 154
LA Q+ + F A+ ++G+ + VG + L K+P +
Sbjct: 104 LAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPHI 145
Score = 138 (53.6 bits), Expect = 1.5e-16, Sum P(2) = 1.5e-16
Identities = 55/182 (30%), Positives = 86/182 (47%)
Query: 175 ILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFS 234
I++ATPGRL+DH+ T+GF L L YLV+DE DR+L ++ + +L++ D +
Sbjct: 145 IIIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRK---- 200
Query: 235 DASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFL 294
TFL SA + K +++ ++R P VK +S+ Q KL Q + P
Sbjct: 201 ---TFLFSATMT-KKVQK--LQRAALKNP----VKCAVSSKY-QTVEKLQQYYIFIPSKF 249
Query: 295 TTGETRYKLPERL-ESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLN 353
Y L E S+ + C + LL++LG I + + RL +L N
Sbjct: 250 KDTYLVYILNELAGNSFMIFCSTCNNTQRTALLLRNLGFT-AIPLHGQMSQSKRLGSL-N 307
Query: 354 HF 355
F
Sbjct: 308 KF 309
Score = 123 (48.4 bits), Expect = 5.4e-15, Sum P(2) = 5.4e-15
Identities = 37/114 (32%), Positives = 55/114 (48%)
Query: 262 KPYPRLVKMVL-SATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKP 320
K PR K L SAT+T+ KL + L +P+ ++Y+ E+L+ Y + SK K
Sbjct: 193 KVIPRDRKTFLFSATMTKKVQKLQRAALKNPVKCAVS-SKYQTVEKLQQYYIFIPSKFKD 251
Query: 321 LYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVR 374
YLV +L L ++F S+ +T R LL + G I + G QS R
Sbjct: 252 TYLVYILNELAGNSFMIFCSTCNNTQRTALLLRNLGFTAIPLH---GQMSQSKR 302
>UNIPROTKB|F1NEQ3 [details] [associations]
symbol:DDX18 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005730 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
OMA:KDGYRSY GeneTree:ENSGT00680000100037 EMBL:AADN02016926
IPI:IPI00598837 Ensembl:ENSGALT00000019841 Uniprot:F1NEQ3
Length = 659
Score = 131 (51.2 bits), Expect = 1.8e-16, Sum P(3) = 1.8e-16
Identities = 24/58 (41%), Positives = 41/58 (70%)
Query: 167 QELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQL 224
Q+L + ++I+VATPGRL+DH+ T GF ++L LV+DE DR+L ++ + +++L
Sbjct: 283 QKLGNGINIIVATPGRLLDHMQNTPGFMYKNLQCLVIDEADRILEVGFEEEMKQIIKL 340
Score = 104 (41.7 bits), Expect = 1.8e-16, Sum P(3) = 1.8e-16
Identities = 33/106 (31%), Positives = 55/106 (51%)
Query: 47 GISSL-FPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAV--RCLR 103
GIS + F + ++I P L RD+ + TGSGKTL++ +P V+ + R
Sbjct: 180 GISDMGFTHMTEIQHKSIKPLLEGRDILAAAKTGSGKTLAFLIPAVELIYKLKFMPRNGT 239
Query: 104 ALVVL-PTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISEL 148
+++L PTR+LA+Q V + + GL +G S+ + E +L
Sbjct: 240 GVIILSPTRELAMQTYGVLKELMNHHVHTYGLIMGGSNRSAEAQKL 285
Score = 88 (36.0 bits), Expect = 1.8e-16, Sum P(3) = 1.8e-16
Identities = 37/130 (28%), Positives = 60/130 (46%)
Query: 250 IRRCGVERGFKD--KPYP-RLVKMVLSATLTQDPNKLAQLDLH-HPLFLTTGETRYKLP- 304
I G E K K P R M+ SAT T+ LA++ L PL++ + +
Sbjct: 325 ILEVGFEEEMKQIIKLLPKRRQTMLFSATQTRKVEDLAKISLKKEPLYVGVDDNKETATV 384
Query: 305 ERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKE 364
+ LE ++C S+ + L L L+ ++K +VF SS S LLN+ + + +
Sbjct: 385 DGLEQGYVVCPSEKRFLLLFTFLKKNRKKKLMVFFSSCMSVKYHYELLNY---IDLPVLA 441
Query: 365 YSGLQRQSVR 374
G Q+Q+ R
Sbjct: 442 IHGKQKQTKR 451
>FB|FBgn0001565 [details] [associations]
symbol:Hlc "Helicase" species:7227 "Drosophila melanogaster"
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0022008 "neurogenesis" evidence=IMP]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0022008
EMBL:AE014298 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 EMBL:AF017777 InterPro:IPR014014
PROSITE:PS51195 KO:K14810 GeneTree:ENSGT00550000074946 HSSP:P10081
FlyBase:FBgn0001565 EMBL:AY070624 PIR:T08433 RefSeq:NP_523434.2
UniGene:Dm.2805 SMR:Q9VRI0 STRING:Q9VRI0 EnsemblMetazoa:FBtr0077221
GeneID:33118 KEGG:dme:Dmel_CG1666 UCSC:CG1666-RA CTD:33118
InParanoid:Q9VRI0 OMA:THRIGRA GenomeRNAi:33118 NextBio:781998
Uniprot:Q9VRI0
Length = 560
Score = 159 (61.0 bits), Expect = 2.4e-16, Sum P(2) = 2.4e-16
Identities = 55/186 (29%), Positives = 89/186 (47%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFE-RDLCINSPTGSGKTLSYALPIVQT 93
LD R+ A+ +G P + Q T P L E +D+ + + TGSGKT +YALP++Q
Sbjct: 16 LDQRILKAVAQLGWQQ--PTLI---QSTAIPLLLEGKDVVVRARTGSGKTATYALPLIQK 70
Query: 94 LSNRAVRC----LRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELI 149
+ N + + A+V+ PT++L Q + V + + G V +A IAD ++ +
Sbjct: 71 ILNSKLNASEQYVSAVVLAPTKELCRQSRKVIEQLVESCGKVVRVA----DIADSSNDTV 126
Query: 150 KRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRL 209
+ L + DI+VATP L+ + A L+H+ LVVDE D +
Sbjct: 127 TQR--------------HALSESPDIVVATPANLLAYAEAGSVVDLKHVETLVVDEADLV 172
Query: 210 LREAYQ 215
Y+
Sbjct: 173 FAYGYE 178
Score = 118 (46.6 bits), Expect = 2.4e-16, Sum P(2) = 2.4e-16
Identities = 35/107 (32%), Positives = 56/107 (52%)
Query: 254 GVERGFKD--KPYPRLVKMVL-SATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESY 310
G E+ FK K P + + VL SATLT D ++ L L++P+ L E ++L
Sbjct: 176 GYEKDFKRLIKHLPPIYQAVLVSATLTDDVVRMKGLCLNNPVTLKLEEPELVPQDQLSHQ 235
Query: 311 KLICESKLKPLYLVALLQ-SLGEEKCIVFTSSVESTHRLCTLLNHFG 356
+++ E KP L ALL+ L K I+F +S++ +++ L FG
Sbjct: 236 RILAEENDKPAILYALLKLRLIRGKSIIFVNSIDRCYKVRLFLEQFG 282
>UNIPROTKB|F1P8J6 [details] [associations]
symbol:DDX55 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313
Pfam:PF13959 CTD:57696 KO:K14809 GeneTree:ENSGT00550000074969
EMBL:AAEX03014637 RefSeq:XP_543371.2 Ensembl:ENSCAFT00000011945
GeneID:486246 KEGG:cfa:486246 Uniprot:F1P8J6
Length = 599
Score = 184 (69.8 bits), Expect = 2.4e-16, Sum P(2) = 2.4e-16
Identities = 71/221 (32%), Positives = 109/221 (49%)
Query: 30 DHLPC-LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYAL 88
+ LP L P++ AL +G + PVQ A TI + +D+ + TGSGKTL++ +
Sbjct: 10 ESLPTQLHPQVLGALGQLGFPHMTPVQSA----TIPLFMKNKDVAAEAVTGSGKTLAFVI 65
Query: 89 PIVQTLSNRAVRCLR----ALVVLPTRDLALQVKDVFAAIAPAVG-LSVGLAVGQSSIAD 143
PI++ L R + + A+++ PTR+LA+QV +V A + S L +G + AD
Sbjct: 66 PILEILLRREEKLKKNQVGAIIITPTRELAIQVDEVLAHFTKSFPQFSQILWIGGRNPAD 125
Query: 144 EISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINA-TRGFTL----EHL 198
++S R K + G +I+VATPGRL D G L + L
Sbjct: 126 DVS----RFKEQGG----------------NIIVATPGRLEDMFRRKVEGLDLASCVKSL 165
Query: 199 CYLVVDETDRLLREAYQAWLPTVLQ-LTRSDNENRFSDAST 238
LV+DE DRLL ++A + T+L+ L + FS T
Sbjct: 166 EVLVLDEADRLLDMGFEASINTILEFLPKQRRTGLFSATQT 206
Score = 91 (37.1 bits), Expect = 2.4e-16, Sum P(2) = 2.4e-16
Identities = 24/77 (31%), Positives = 43/77 (55%)
Query: 271 VLSATLTQDPNKLAQLDLHHPLFLTTGE------TRYKLPERLESYKLICESKLKPLYLV 324
+ SAT TQ+ L + L +P+ ++ E + K P RLE+Y ++C++ K LV
Sbjct: 200 LFSATQTQEVESLVRAGLRNPVRISVKEKGVAASSTQKTPSRLENYYMVCKADEKFNQLV 259
Query: 325 ALLQSLGEEKCIVFTSS 341
L++ +EK ++F S+
Sbjct: 260 HFLRNHKQEKHLIFFST 276
>UNIPROTKB|E1C187 [details] [associations]
symbol:DDX27 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00550000074997 OMA:TRTFTDH EMBL:AADN02019007
IPI:IPI00822640 Ensembl:ENSGALT00000011297 ArrayExpress:E1C187
Uniprot:E1C187
Length = 759
Score = 133 (51.9 bits), Expect = 4.7e-16, Sum P(3) = 4.7e-16
Identities = 46/143 (32%), Positives = 70/143 (48%)
Query: 22 SLFEDCPL--DHLPCLD-----PRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCI 74
S FED D+L D P LK A+ +G P+Q A I GL +D+C
Sbjct: 168 SFFEDASEYDDNLSFQDMNLSRPLLK-AITALGFKQPTPIQKAC----IPVGLLGKDICA 222
Query: 75 NSPTGS-GKTLSYALPIVQTL--SNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLS 131
+ TG+ GKT ++ LP+++ L R R LV++PTR+L +QV V +A ++
Sbjct: 223 CAATGTVGKTAAFILPVLERLIYKPRQAPITRVLVLVPTRELGIQVHSVTKQLAQFSSVT 282
Query: 132 VGLAVGQSSIADEISELIKRPKL 154
LAVG + + + L P +
Sbjct: 283 TCLAVGGLDVKTQEAALRSGPDI 305
Score = 121 (47.7 bits), Expect = 4.7e-16, Sum P(3) = 4.7e-16
Identities = 27/71 (38%), Positives = 43/71 (60%)
Query: 169 LQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQL-TRS 227
L+S DIL+ATPGRL+DH++ F L + L++DE DR+L E ++ + +++L +R
Sbjct: 299 LRSGPDILIATPGRLIDHLHNCPSFHLSSVEVLILDEADRMLDEYFEEQMKEIIRLCSRH 358
Query: 228 DNENRFSDAST 238
FS T
Sbjct: 359 RQTMLFSATMT 369
Score = 67 (28.6 bits), Expect = 4.7e-16, Sum P(3) = 4.7e-16
Identities = 25/107 (23%), Positives = 48/107 (44%)
Query: 270 MVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKL--KPLYLVALL 327
M+ SAT+T++ LA + L +P + P + + I ++ + + ALL
Sbjct: 362 MLFSATMTEEVKDLASVSLKNPTRIFVNSNTDVAPFLRQEFIRIRPNREGDREAIVSALL 421
Query: 328 QSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVR 374
+ ++FT + + HR+ LL G +++ E G Q+ R
Sbjct: 422 TRTFPDHVMLFTQTKKQAHRMHILLGLMG---LRVGELHGNLSQAQR 465
>UNIPROTKB|F5H5U2 [details] [associations]
symbol:DDX55 "ATP-dependent RNA helicase DDX55"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR011545 Pfam:PF00270 PROSITE:PS00039
GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
InterPro:IPR025313 Pfam:PF13959 EMBL:AC055713 EMBL:AC117503
HGNC:HGNC:20085 ChiTaRS:DDX55 IPI:IPI01010332
ProteinModelPortal:F5H5U2 SMR:F5H5U2 Ensembl:ENST00000538744
ArrayExpress:F5H5U2 Bgee:F5H5U2 Uniprot:F5H5U2
Length = 569
Score = 176 (67.0 bits), Expect = 6.7e-16, Sum P(2) = 6.7e-16
Identities = 67/220 (30%), Positives = 105/220 (47%)
Query: 30 DHLPC-LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYAL 88
+ LP L P++ AL+ +G + PVQ A TI + +D+ + TGSGKTL++ +
Sbjct: 10 ESLPVPLHPQVLGALRELGFPYMTPVQSA----TIPLFMRNKDVAAEAVTGSGKTLAFVI 65
Query: 89 PIVQTLSNRAVRCLR----ALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADE 144
PI++ L R + + A+++ PTR+LA+Q+ +V + E
Sbjct: 66 PILEILLRREEKLKKSQVGAIIITPTRELAIQIDEVLSHFTKHF--------------PE 111
Query: 145 ISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINA-TRGFTL----EHLC 199
S+++ G EDV + Q +I+VATPGRL D G L L
Sbjct: 112 FSQILWIGGRNPG-----EDVERFKQQGGNIIVATPGRLEDMFRRKAEGLDLASCVRSLD 166
Query: 200 YLVVDETDRLLREAYQAWLPTVLQ-LTRSDNENRFSDAST 238
LV+DE DRLL ++A + T+L+ L + FS T
Sbjct: 167 VLVLDEADRLLDMGFEASINTILEFLPKQRRTGLFSATQT 206
Score = 95 (38.5 bits), Expect = 6.7e-16, Sum P(2) = 6.7e-16
Identities = 29/100 (29%), Positives = 53/100 (53%)
Query: 271 VLSATLTQDPNKLAQLDLHHPLFLTTGE------TRYKLPERLESYKLICESKLKPLYLV 324
+ SAT TQ+ L + L +P+ ++ E + K P RLE+Y ++C++ K LV
Sbjct: 200 LFSATQTQEVENLVRAGLRNPVRVSVKEKGVAASSAQKTPSRLENYYMVCKADEKFNQLV 259
Query: 325 ALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGE-LRIKIK 363
L++ +EK +VF S+ C + ++G+ L + +K
Sbjct: 260 HFLRNHKQEKHLVFFST-------CACVEYYGKALEVLVK 292
>UNIPROTKB|F1RFL5 [details] [associations]
symbol:DDX55 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
CTD:57696 KO:K14809 GeneTree:ENSGT00550000074969 OMA:CACVEYW
EMBL:CU468658 RefSeq:XP_001927747.2 UniGene:Ssc.4554
UniGene:Ssc.95961 Ensembl:ENSSSCT00000010713 GeneID:100157342
KEGG:ssc:100157342 Uniprot:F1RFL5
Length = 600
Score = 179 (68.1 bits), Expect = 7.4e-16, Sum P(2) = 7.4e-16
Identities = 70/221 (31%), Positives = 107/221 (48%)
Query: 30 DHLPC-LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYAL 88
+ LP L PR+ LQ +G + PVQ A TI + +D+ + TGSGKTL++ +
Sbjct: 10 ESLPVPLHPRVLDVLQELGFPYMTPVQSA----TIPLFMKNKDVAAEAVTGSGKTLAFVI 65
Query: 89 PIVQTLSNRAVRCLR----ALVVLPTRDLALQVKDVFAAIA-PAVGLSVGLAVGQSSIAD 143
PI++ L R + + A+++ PTR+LA+Q+ +V + P S L +G
Sbjct: 66 PILEILLRREEKLKKSQVGAIIITPTRELAVQIDEVLSHFTKPFPQFSQILWIGG----- 120
Query: 144 EISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINA-TRGFTL----EHL 198
+ P G EDV + + +I+VATPGRL D G L + L
Sbjct: 121 ------RNP----G-----EDVARFKEHGGNIIVATPGRLEDMFRRKAEGLDLASCVKSL 165
Query: 199 CYLVVDETDRLLREAYQAWLPTVLQ-LTRSDNENRFSDAST 238
LV+DE DRLL ++A + T+L+ L + FS T
Sbjct: 166 DVLVLDEADRLLDMGFEASINTILEFLPKQRRTGLFSATQT 206
Score = 92 (37.4 bits), Expect = 7.4e-16, Sum P(2) = 7.4e-16
Identities = 25/77 (32%), Positives = 43/77 (55%)
Query: 271 VLSATLTQDPNKLAQLDLHHPLFLTTGE------TRYKLPERLESYKLICESKLKPLYLV 324
+ SAT TQ+ L + L +P+ ++ E + K P RLE+Y ++C++ K LV
Sbjct: 200 LFSATQTQEVENLVRAGLRNPVRISVKEKGAAASSTQKTPSRLENYYMVCKADEKFNQLV 259
Query: 325 ALLQSLGEEKCIVFTSS 341
L++ +EK +VF S+
Sbjct: 260 HFLRNHKQEKHLVFFST 276
>UNIPROTKB|Q8NHQ9 [details] [associations]
symbol:DDX55 "ATP-dependent RNA helicase DDX55"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
InterPro:IPR025313 Pfam:PF13959 HSSP:P26196 CTD:57696
HOGENOM:HOG000268803 HOVERGEN:HBG107796 KO:K14809 OrthoDB:EOG4WH8KN
OMA:CACVEYW EMBL:AC055713 EMBL:AC117503 EMBL:BC030020 EMBL:AL833756
EMBL:AB046815 IPI:IPI00185361 RefSeq:NP_065987.1 UniGene:Hs.286173
ProteinModelPortal:Q8NHQ9 SMR:Q8NHQ9 STRING:Q8NHQ9
PhosphoSite:Q8NHQ9 DMDM:296439376 PaxDb:Q8NHQ9 PRIDE:Q8NHQ9
Ensembl:ENST00000238146 GeneID:57696 KEGG:hsa:57696 UCSC:uc001ufi.3
GeneCards:GC12P124086 HGNC:HGNC:20085 neXtProt:NX_Q8NHQ9
PharmGKB:PA134984021 InParanoid:Q8NHQ9 ChiTaRS:DDX55
GenomeRNAi:57696 NextBio:64547 ArrayExpress:Q8NHQ9 Bgee:Q8NHQ9
CleanEx:HS_DDX55 Genevestigator:Q8NHQ9 GermOnline:ENSG00000111364
Uniprot:Q8NHQ9
Length = 600
Score = 176 (67.0 bits), Expect = 8.0e-16, Sum P(2) = 8.0e-16
Identities = 67/220 (30%), Positives = 105/220 (47%)
Query: 30 DHLPC-LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYAL 88
+ LP L P++ AL+ +G + PVQ A TI + +D+ + TGSGKTL++ +
Sbjct: 10 ESLPVPLHPQVLGALRELGFPYMTPVQSA----TIPLFMRNKDVAAEAVTGSGKTLAFVI 65
Query: 89 PIVQTLSNRAVRCLR----ALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADE 144
PI++ L R + + A+++ PTR+LA+Q+ +V + E
Sbjct: 66 PILEILLRREEKLKKSQVGAIIITPTRELAIQIDEVLSHFTKHF--------------PE 111
Query: 145 ISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINA-TRGFTL----EHLC 199
S+++ G EDV + Q +I+VATPGRL D G L L
Sbjct: 112 FSQILWIGGRNPG-----EDVERFKQQGGNIIVATPGRLEDMFRRKAEGLDLASCVRSLD 166
Query: 200 YLVVDETDRLLREAYQAWLPTVLQ-LTRSDNENRFSDAST 238
LV+DE DRLL ++A + T+L+ L + FS T
Sbjct: 167 VLVLDEADRLLDMGFEASINTILEFLPKQRRTGLFSATQT 206
Score = 95 (38.5 bits), Expect = 8.0e-16, Sum P(2) = 8.0e-16
Identities = 29/100 (29%), Positives = 53/100 (53%)
Query: 271 VLSATLTQDPNKLAQLDLHHPLFLTTGE------TRYKLPERLESYKLICESKLKPLYLV 324
+ SAT TQ+ L + L +P+ ++ E + K P RLE+Y ++C++ K LV
Sbjct: 200 LFSATQTQEVENLVRAGLRNPVRVSVKEKGVAASSAQKTPSRLENYYMVCKADEKFNQLV 259
Query: 325 ALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGE-LRIKIK 363
L++ +EK +VF S+ C + ++G+ L + +K
Sbjct: 260 HFLRNHKQEKHLVFFST-------CACVEYYGKALEVLVK 292
>ZFIN|ZDB-GENE-050522-359 [details] [associations]
symbol:zgc:112350 "zgc:112350" species:7955 "Danio
rerio" [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
ZFIN:ZDB-GENE-050522-359 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HOVERGEN:HBG100512 KO:K14777
EMBL:BC095776 IPI:IPI00488135 RefSeq:NP_001018522.1
UniGene:Dr.84733 ProteinModelPortal:Q502B4 SMR:Q502B4 GeneID:553715
KEGG:dre:553715 NextBio:20880445 Uniprot:Q502B4
Length = 512
Score = 144 (55.7 bits), Expect = 8.3e-16, Sum P(2) = 8.3e-16
Identities = 35/100 (35%), Positives = 58/100 (58%)
Query: 53 PVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRD 112
P ++ + E I L RD+ + TGSGKT ++A+P++Q+L A R L LV+ PTR+
Sbjct: 102 PTKIQI--EAIPVALQGRDVIGLAETGSGKTGAFAVPVLQSLLACAQR-LHTLVLTPTRE 158
Query: 113 LALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRP 152
LA Q+ + F A+ ++G+ + VG + + L K+P
Sbjct: 159 LAFQIAEQFDALGSSIGVKTAVIVGGIDMMSQALVLAKKP 198
Score = 128 (50.1 bits), Expect = 8.3e-16, Sum P(2) = 8.3e-16
Identities = 26/65 (40%), Positives = 41/65 (63%)
Query: 175 ILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNEN-RF 233
+++ATPGRL+DH+ T+GF L L YLV+DE DR+L +++ + +L++ D F
Sbjct: 200 VVIATPGRLIDHMENTKGFNLRALKYLVMDEADRILNMDFESEVDKILKVIPRDRRTFLF 259
Query: 234 SDAST 238
S T
Sbjct: 260 SATMT 264
Score = 111 (44.1 bits), Expect = 4.9e-14, Sum P(2) = 4.9e-14
Identities = 29/96 (30%), Positives = 49/96 (51%)
Query: 262 KPYPRLVKMVL-SATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKP 320
K PR + L SAT+T+ KL + L P+ + ++Y ++L+ + + SK K
Sbjct: 248 KVIPRDRRTFLFSATMTKKVQKLQRAALQDPVKCSVS-SKYATVDKLQQFYIFIPSKYKD 306
Query: 321 LYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFG 356
YLV++L L +VF + +T R+ LL + G
Sbjct: 307 CYLVSILNELAGNSFMVFCGTCNNTQRVALLLRNLG 342
>TAIR|locus:2152099 [details] [associations]
symbol:AT5G65900 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:CP002688 GenomeReviews:BA000015_GR
EMBL:AL021684 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
HOGENOM:HOG000268799 KO:K13179 EMBL:AB018108 EMBL:AY059930
EMBL:BT001188 EMBL:AJ012745 IPI:IPI00526354 PIR:T05883 PIR:T51352
RefSeq:NP_201391.1 UniGene:At.19658 UniGene:At.66704
ProteinModelPortal:Q9SB89 SMR:Q9SB89 PaxDb:Q9SB89 PRIDE:Q9SB89
EnsemblPlants:AT5G65900.1 GeneID:836719 KEGG:ath:AT5G65900
GeneFarm:951 TAIR:At5g65900 InParanoid:Q9SB89 OMA:HLENTNG
PhylomeDB:Q9SB89 ProtClustDB:CLSN2916378 Genevestigator:Q9SB89
GermOnline:AT5G65900 Uniprot:Q9SB89
Length = 633
Score = 137 (53.3 bits), Expect = 8.5e-16, Sum P(3) = 8.5e-16
Identities = 26/56 (46%), Positives = 39/56 (69%)
Query: 169 LQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQL 224
L V++LVATPGRL+DH+ T GF ++L +LV+DE DR+L + ++ L +L L
Sbjct: 273 LAKGVNLLVATPGRLLDHLENTNGFIFKNLKFLVMDEADRILEQNFEEDLKKILNL 328
Score = 97 (39.2 bits), Expect = 8.5e-16, Sum P(3) = 8.5e-16
Identities = 37/135 (27%), Positives = 61/135 (45%)
Query: 20 DVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTG 79
+ S+ + + L D K +++ MG + + +Q + I P + D+ + TG
Sbjct: 147 ETSIMTNKTFESLSLSDNTYK-SIKEMGFARMTQIQA----KAIPPLMMGEDVLGAARTG 201
Query: 80 SGKTLSYALPIVQTLSNRAVRCLR----ALVVLPTRDLALQVKDVFAAIAPAVGLSVGLA 135
SGKTL++ +P V+ L R R LV+ PTR+LA+Q V + +VG
Sbjct: 202 SGKTLAFLIPAVELLY-RVKFTPRNGTGVLVICPTRELAIQSYGVAKELLKYHSQTVGKV 260
Query: 136 VGQSSIADEISELIK 150
+G E L K
Sbjct: 261 IGGEKRKTEAEILAK 275
Score = 81 (33.6 bits), Expect = 8.5e-16, Sum P(3) = 8.5e-16
Identities = 23/77 (29%), Positives = 43/77 (55%)
Query: 271 VLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLP-ERLESYKLICESKLKPLYLVALLQS 329
+ SAT + LA++ L P+++ E R ++ E LE + S ++ L+L+ L+
Sbjct: 337 LFSATQSAKVEDLARVSLTSPVYIDVDEGRKEVTNEGLEQGYCVVPSAMRLLFLLTFLKR 396
Query: 330 L-GEEKCIVFTSSVEST 345
G++K +VF S+ +ST
Sbjct: 397 FQGKKKIMVFFSTCKST 413
>DICTYBASE|DDB_G0270396 [details] [associations]
symbol:ddx49 "DEAD/DEAH box helicase" species:44689
"Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
dictyBase:DDB_G0270396 GO:GO:0005524 EMBL:AAFI02000005
GenomeReviews:CM000150_GR GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 KO:K14778 OMA:FRNLCAI
RefSeq:XP_646762.1 HSSP:P60842 ProteinModelPortal:Q55BR9
PRIDE:Q55BR9 EnsemblProtists:DDB0234206 GeneID:8617735
KEGG:ddi:DDB_G0270396 ProtClustDB:CLSZ2846935 Uniprot:Q55BR9
Length = 508
Score = 130 (50.8 bits), Expect = 1.0e-15, Sum P(3) = 1.0e-15
Identities = 32/93 (34%), Positives = 52/93 (55%)
Query: 62 TIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVF 121
TI L RD+ ++ TGSGKT S+A+PI+ LS A+++ PTR+LA+Q+ + F
Sbjct: 34 TIPEILKGRDIIASAKTGSGKTASFAIPILNQLSEDPYGVF-AVILTPTRELAVQIGEQF 92
Query: 122 AAIAPAVGLSVGLAVGQSSIADEISELIKRPKL 154
AI + ++ + +G + L KRP +
Sbjct: 93 NAIGAPMNVNCSVVIGGIDNVTQALILDKRPHI 125
Score = 103 (41.3 bits), Expect = 1.0e-15, Sum P(3) = 1.0e-15
Identities = 21/49 (42%), Positives = 32/49 (65%)
Query: 175 ILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQ 223
I+VATPGRL H+N L+ +LV+DE DRLL E ++ + ++L+
Sbjct: 125 IIVATPGRLASHLNNGLKIALKFCKFLVLDEADRLLGEDFELEIASILE 173
Score = 78 (32.5 bits), Expect = 1.0e-15, Sum P(3) = 1.0e-15
Identities = 21/84 (25%), Positives = 42/84 (50%)
Query: 270 MVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQS 329
++ SAT+T++ KL + L+ P F+ ++Y + L+ + + K YLV +L+
Sbjct: 184 LLFSATMTKNLTKLDSIALNKP-FIFEDNSKYDTVDTLKQEYIYMPAPTKDCYLVYILKK 242
Query: 330 LGEEKCIVFTSSVESTHRLCTLLN 353
IVF ++ + + +LN
Sbjct: 243 HEGSSAIVFVNNCYAVEAVKGMLN 266
>FB|FBgn0010220 [details] [associations]
symbol:Dbp45A "DEAD box protein 45A" species:7227 "Drosophila
melanogaster" [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=ISS;NAS] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0000381 "regulation of
alternative mRNA splicing, via spliceosome" evidence=IMP]
[GO:0005634 "nucleus" evidence=IC] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 EMBL:AE013599
GO:GO:0005524 GO:GO:0005634 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0004004 GO:GO:0000381
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 KO:K14778
GeneTree:ENSGT00670000098028 EMBL:L13612 EMBL:Z23266 EMBL:AY058728
PIR:S38329 RefSeq:NP_476927.1 UniGene:Dm.4231
ProteinModelPortal:Q07886 SMR:Q07886 PaxDb:Q07886
EnsemblMetazoa:FBtr0088564 GeneID:35917 KEGG:dme:Dmel_CG12759
CTD:35917 FlyBase:FBgn0010220 InParanoid:Q07886 OMA:CQLLSMT
OrthoDB:EOG431ZDJ PhylomeDB:Q07886 GenomeRNAi:35917 NextBio:795815
Bgee:Q07886 GermOnline:CG12759 Uniprot:Q07886
Length = 521
Score = 151 (58.2 bits), Expect = 1.2e-15, Sum P(3) = 1.2e-15
Identities = 42/121 (34%), Positives = 64/121 (52%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSP-TGSGKTLSYALPIVQT 93
L P L L +G+ P+Q Q+ I P + CI + TGSGKT ++ALPI++
Sbjct: 14 LRPWLVKQLTKLGLKGATPIQ----QKCI-PAILAGQDCIGAAKTGSGKTFAFALPILER 68
Query: 94 LSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPK 153
LS V ALV+ PT +LA Q+ + F A+G+ V + G + E +L++RP
Sbjct: 69 LSEEPVSHF-ALVLTPTHELAYQISEQFLVAGQAMGVRVCVVSGGTDQMVESQKLMQRPH 127
Query: 154 L 154
+
Sbjct: 128 I 128
Score = 116 (45.9 bits), Expect = 1.2e-15, Sum P(3) = 1.2e-15
Identities = 26/71 (36%), Positives = 38/71 (53%)
Query: 167 QELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTR 226
Q+L I+VA PGRL DH+ F+ ++L YLVVDE DR+L + L + +
Sbjct: 120 QKLMQRPHIVVAMPGRLADHLTGCDTFSFDNLKYLVVDEADRMLNGDFDESLSIIERCLP 179
Query: 227 SDNENRFSDAS 237
+N F A+
Sbjct: 180 KTRQNLFFSAT 190
Score = 41 (19.5 bits), Expect = 1.2e-15, Sum P(3) = 1.2e-15
Identities = 12/49 (24%), Positives = 21/49 (42%)
Query: 305 ERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLN 353
E L+ L+C + + L+ L+ EE +T + C LL+
Sbjct: 220 ETLDQRYLLCADYDRDMVLIEALRKYREENENANVMIFTNTKKYCQLLS 268
>MGI|MGI:1915098 [details] [associations]
symbol:Ddx55 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 55"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0016787 "hydrolase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 MGI:MGI:1915098 GO:GO:0005524
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
InterPro:IPR025313 Pfam:PF13959 HSSP:P26196 CTD:57696
HOGENOM:HOG000268803 HOVERGEN:HBG107796 KO:K14809 OrthoDB:EOG4WH8KN
GeneTree:ENSGT00550000074969 OMA:CACVEYW EMBL:AK129402
EMBL:AK033741 EMBL:AK154422 EMBL:BC117786 EMBL:BC117787
IPI:IPI00453808 RefSeq:NP_080685.2 UniGene:Mm.281601
ProteinModelPortal:Q6ZPL9 SMR:Q6ZPL9 IntAct:Q6ZPL9 STRING:Q6ZPL9
PRIDE:Q6ZPL9 Ensembl:ENSMUST00000071057 GeneID:67848 KEGG:mmu:67848
UCSC:uc008zqc.2 InParanoid:Q6ZPL9 NextBio:325707 Bgee:Q6ZPL9
CleanEx:MM_DDX55 Genevestigator:Q6ZPL9
GermOnline:ENSMUSG00000029389 Uniprot:Q6ZPL9
Length = 600
Score = 177 (67.4 bits), Expect = 1.3e-15, Sum P(2) = 1.3e-15
Identities = 66/214 (30%), Positives = 103/214 (48%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
L PR+ AL+ +G + PVQ A TI + +D+ + TGSGKTL++ +PI++ L
Sbjct: 16 LHPRVLGALRELGFPHMTPVQSA----TIPLFMKNKDVAAEAVTGSGKTLAFVIPILEIL 71
Query: 95 SNRAVRCLR----ALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIK 150
R + + A+V+ PTR+LA+Q+ +V + + S+++
Sbjct: 72 LRREEKLKKNQVGAIVITPTRELAIQIDEVLSHFTKHF--------------PQFSQILW 117
Query: 151 RPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINA-TRGFTL----EHLCYLVVDE 205
G EDV + Q +I+VATPGRL D G L + L LV+DE
Sbjct: 118 IGGRNPG-----EDVERFKQHGGNIIVATPGRLEDMFRRKAEGLDLASCVKSLDVLVLDE 172
Query: 206 TDRLLREAYQAWLPTVLQ-LTRSDNENRFSDAST 238
DRLL ++A + T+L+ L + FS T
Sbjct: 173 ADRLLDMGFEASINTILEFLPKQRRTGLFSATQT 206
Score = 92 (37.4 bits), Expect = 1.3e-15, Sum P(2) = 1.3e-15
Identities = 26/77 (33%), Positives = 43/77 (55%)
Query: 271 VLSATLTQDPNKLAQLDLHHPLFLTTGE------TRYKLPERLESYKLICESKLKPLYLV 324
+ SAT TQ+ L + L +P+ ++ E + K P RLE++ +IC++ K LV
Sbjct: 200 LFSATQTQEVENLVRAGLRNPVRISVKEKGVAASSTQKTPSRLENHYMICKADEKFNQLV 259
Query: 325 ALLQSLGEEKCIVFTSS 341
L+S +EK +VF S+
Sbjct: 260 HFLRSRQQEKHLVFFST 276
>UNIPROTKB|Q8EI96 [details] [associations]
symbol:srmB "ATP-dependent RNA helicase SrmB"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 OMA:PLAMDQR
HOGENOM:HOG000268807 KO:K05590 ProtClustDB:PRK11192
RefSeq:NP_716576.1 ProteinModelPortal:Q8EI96 GeneID:1168793
KEGG:son:SO_0947 PATRIC:23521551 Uniprot:Q8EI96
Length = 420
Score = 145 (56.1 bits), Expect = 1.7e-15, Sum P(2) = 1.7e-15
Identities = 42/119 (35%), Positives = 63/119 (52%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
LDP L +L+ MG L P + QET+ L +RD+ +PTG+GKT S+ LP +Q L
Sbjct: 8 LDPSLLESLKAMG--HLSPTTIQ--QETLPHALEQRDILARAPTGTGKTASFLLPALQHL 63
Query: 95 SNRAVRC---LRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIK 150
+ R R L++ PTR+LA Q+ +A GL++ + G A + E +K
Sbjct: 64 IDFPRRYSGQARVLILTPTRELASQIHRYACHLATDQGLNIAIITGGVPYAPQ-EEALK 121
Score = 121 (47.7 bits), Expect = 1.7e-15, Sum P(2) = 1.7e-15
Identities = 26/84 (30%), Positives = 49/84 (58%)
Query: 154 LEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREA 213
+ G+ Y P++ + L+ +DILVATPGRLM++++ + F+ E + L++DE DR+L
Sbjct: 107 ITGGVPYAPQE--EALKGNIDILVATPGRLMEYLDKGK-FSAESVDILIIDEADRMLDMG 163
Query: 214 YQAWLPTVLQLTRSDNENRFSDAS 237
+ A + + + +N A+
Sbjct: 164 FSAVVKAIALEAQGRKQNMLFSAT 187
>TIGR_CMR|SO_0947 [details] [associations]
symbol:SO_0947 "ATP-dependent RNA helicase SrmB"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 OMA:PLAMDQR
HOGENOM:HOG000268807 KO:K05590 ProtClustDB:PRK11192
RefSeq:NP_716576.1 ProteinModelPortal:Q8EI96 GeneID:1168793
KEGG:son:SO_0947 PATRIC:23521551 Uniprot:Q8EI96
Length = 420
Score = 145 (56.1 bits), Expect = 1.7e-15, Sum P(2) = 1.7e-15
Identities = 42/119 (35%), Positives = 63/119 (52%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
LDP L +L+ MG L P + QET+ L +RD+ +PTG+GKT S+ LP +Q L
Sbjct: 8 LDPSLLESLKAMG--HLSPTTIQ--QETLPHALEQRDILARAPTGTGKTASFLLPALQHL 63
Query: 95 SNRAVRC---LRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIK 150
+ R R L++ PTR+LA Q+ +A GL++ + G A + E +K
Sbjct: 64 IDFPRRYSGQARVLILTPTRELASQIHRYACHLATDQGLNIAIITGGVPYAPQ-EEALK 121
Score = 121 (47.7 bits), Expect = 1.7e-15, Sum P(2) = 1.7e-15
Identities = 26/84 (30%), Positives = 49/84 (58%)
Query: 154 LEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREA 213
+ G+ Y P++ + L+ +DILVATPGRLM++++ + F+ E + L++DE DR+L
Sbjct: 107 ITGGVPYAPQE--EALKGNIDILVATPGRLMEYLDKGK-FSAESVDILIIDEADRMLDMG 163
Query: 214 YQAWLPTVLQLTRSDNENRFSDAS 237
+ A + + + +N A+
Sbjct: 164 FSAVVKAIALEAQGRKQNMLFSAT 187
>TAIR|locus:2173517 [details] [associations]
symbol:AT5G60990 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0009220
"pyrimidine ribonucleotide biosynthetic process" evidence=RCA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:CP002688 GenomeReviews:BA000015_GR
GO:GO:0003723 EMBL:AB008269 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268802 KO:K14777 OMA:IFIPSKF
EMBL:AK117799 EMBL:BT005375 EMBL:AY088068 EMBL:AJ010462
IPI:IPI00518446 PIR:T51342 RefSeq:NP_568931.1 UniGene:At.20430
ProteinModelPortal:Q8GY84 SMR:Q8GY84 STRING:Q8GY84 PaxDb:Q8GY84
PRIDE:Q8GY84 EnsemblPlants:AT5G60990.1 GeneID:836220
KEGG:ath:AT5G60990 GeneFarm:923 TAIR:At5g60990 InParanoid:Q8GY84
PhylomeDB:Q8GY84 ProtClustDB:CLSN2690059 Genevestigator:Q8GY84
GermOnline:AT5G60990 Uniprot:Q8GY84
Length = 456
Score = 163 (62.4 bits), Expect = 1.9e-15, Sum P(2) = 1.9e-15
Identities = 53/155 (34%), Positives = 82/155 (52%)
Query: 70 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAI-APAV 128
+D+ + TGSGKT ++A+PI+Q L P D A FA + +P
Sbjct: 47 KDVIGLAQTGSGKTGAFAIPILQALLEYVYDSEPKKGRRP--DPAF-----FACVLSPTR 99
Query: 129 GLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHIN 188
L++ +A ++ +IS ++ L GI D L ++VATPGRL DH++
Sbjct: 100 ELAIQIAEQFEALGADIS--LRCAVLVGGI--DRMQQTIALGKRPHVIVATPGRLWDHMS 155
Query: 189 ATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQ 223
T+GF+L+ L YLV+DE DRLL E ++ L +L+
Sbjct: 156 DTKGFSLKSLKYLVLDEADRLLNEDFEKSLNQILE 190
Score = 102 (41.0 bits), Expect = 1.9e-15, Sum P(2) = 1.9e-15
Identities = 31/105 (29%), Positives = 52/105 (49%)
Query: 271 VLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERL-ESYKLICESKLKPLYLVALLQS 329
+ SAT+T+ KL + L +P+ + ++Y + L + Y+ + +K K YLV +L
Sbjct: 200 LFSATMTKKVRKLQRACLRNPVKIEAA-SKYSTVDTLKQQYRFVA-AKYKDCYLVYILSE 257
Query: 330 LGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVR 374
+ E ++FT + + T L +L G I I SG QS R
Sbjct: 258 MPESTSMIFTRTCDGTRFLALVLRSLGFRAIPI---SGQMTQSKR 299
>TAIR|locus:2087832 [details] [associations]
symbol:PMH1 "putative mitochondrial RNA helicase 1"
species:3702 "Arabidopsis thaliana" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISM] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA;ISS] [GO:0003677 "DNA binding" evidence=IDA]
[GO:0003723 "RNA binding" evidence=IDA] [GO:0009409 "response to
cold" evidence=IEP] [GO:0009414 "response to water deprivation"
evidence=IMP] [GO:0009651 "response to salt stress" evidence=IMP]
[GO:0043234 "protein complex" evidence=IDA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0043234 GO:GO:0003677 GO:GO:0009651
GO:GO:0009409 GO:GO:0009414 GO:GO:0003723 EMBL:AB022215
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268800 ProtClustDB:CLSN2684125 EMBL:AY091091
EMBL:AJ010461 IPI:IPI00517476 PIR:T51341 RefSeq:NP_188870.1
UniGene:At.25190 ProteinModelPortal:Q9LUW6 SMR:Q9LUW6 IntAct:Q9LUW6
STRING:Q9LUW6 PaxDb:Q9LUW6 PRIDE:Q9LUW6 EnsemblPlants:AT3G22310.1
GeneID:821800 KEGG:ath:AT3G22310 GeneFarm:922 TAIR:At3g22310
InParanoid:Q9LUW6 OMA:VSQGRQV PhylomeDB:Q9LUW6
Genevestigator:Q9LUW6 GermOnline:AT3G22310 Uniprot:Q9LUW6
Length = 610
Score = 140 (54.3 bits), Expect = 2.2e-15, Sum P(3) = 2.2e-15
Identities = 40/119 (33%), Positives = 65/119 (54%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
+ P + AL+ GI LFP+Q AV + P + RD+ + TG+GKTL++ +PI+ +
Sbjct: 123 ISPEIVKALKGRGIEKLFPIQKAVLE----PAMEGRDMIGRARTGTGKTLAFGIPIIDKI 178
Query: 95 SNRAVRCLRA-----LVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISEL 148
+ R LV+ PTR+LA QV+ F AP++ ++ L G + I ++ EL
Sbjct: 179 IKFNAKHGRGKNPQCLVLAPTRELARQVEKEFRESAPSLD-TICL-YGGTPIGQQMREL 235
Score = 93 (37.8 bits), Expect = 2.2e-15, Sum P(3) = 2.2e-15
Identities = 24/83 (28%), Positives = 46/83 (55%)
Query: 166 LQELQSAVDILVATPGRLMDHINATRG-FTLEHLCYLVVDETDRLLREAYQAWLPTVLQL 224
++EL +D+ V TPGR++D + RG L + ++V+DE D++L+ + + +LQ
Sbjct: 232 MRELNYGIDVAVGTPGRIIDLMK--RGALNLSEVQFVVLDEADQMLQVGFAEDVEIILQK 289
Query: 225 TRSDNENRFSDASTFLPSAFGSL 247
+ ++ A+ +PS SL
Sbjct: 290 LPAKRQSMMFSAT--MPSWIRSL 310
Score = 77 (32.2 bits), Expect = 2.2e-15, Sum P(3) = 2.2e-15
Identities = 23/81 (28%), Positives = 41/81 (50%)
Query: 270 MVLSATLTQDPNKLAQLDLHHPLFLT-TGETRYKLPERLESYKLICESKLKPLYLVALLQ 328
M+ SAT+ L + L++PL + G++ KL + + Y + +S + + L++
Sbjct: 297 MMFSATMPSWIRSLTKKYLNNPLTIDLVGDSDQKLADGITMYSIAADSYGRASIIGPLVK 356
Query: 329 SLGEE-KCIVFTSSVESTHRL 348
G+ KCIVFT + RL
Sbjct: 357 EHGKGGKCIVFTQTKRDADRL 377
>UNIPROTKB|F1NA53 [details] [associations]
symbol:DDX49 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00670000098028 EMBL:AADN02071779 EMBL:AADN02071780
IPI:IPI00684751 ProteinModelPortal:F1NA53
Ensembl:ENSGALT00000004949 ArrayExpress:F1NA53 Uniprot:F1NA53
Length = 402
Score = 145 (56.1 bits), Expect = 3.9e-15, Sum P(2) = 3.9e-15
Identities = 42/119 (35%), Positives = 62/119 (52%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCIN-SPTGSGKTLSYALPIVQT 93
L P L + MG+S PVQ + I P L RD C+ + TGSGKT ++ LP++Q
Sbjct: 9 LAPWLVEQARQMGLSRPTPVQASC----IPPILQGRD-CLGCAKTGSGKTAAFVLPVLQV 63
Query: 94 LSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRP 152
LS LV+ PTR+LA Q+ + F + +GL + VG + + EL ++P
Sbjct: 64 LSEDPYGIF-CLVLTPTRELAYQIAEQFRVLGKPLGLKDCVVVGGLDMVAQALELSRKP 121
Score = 117 (46.2 bits), Expect = 3.9e-15, Sum P(2) = 3.9e-15
Identities = 28/86 (32%), Positives = 47/86 (54%)
Query: 168 ELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREA---YQAWLPTVLQL 224
EL +++ATPGRL DH+ ++ F+L+ L +LV+DE DRLL + + A L +L+
Sbjct: 116 ELSRKPHVVIATPGRLADHLRSSNTFSLKKLKFLVLDEADRLLEQGCADFTADLEVILEA 175
Query: 225 TRSDNENRFSDASTFLPSAFGSLKTI 250
+ + A+ L LK++
Sbjct: 176 VPARRQTLLFSAT--LTDTLNELKSL 199
Score = 89 (36.4 bits), Expect = 3.1e-12, Sum P(2) = 3.1e-12
Identities = 27/90 (30%), Positives = 44/90 (48%)
Query: 270 MVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQS 329
++ SATLT N+L L ++ P F + E + Y L+ E+ +K YLV L+Q+
Sbjct: 183 LLFSATLTDTLNELKSLAMNRPFFWEAASEVRTVDELDQRYLLVPEA-VKDAYLVHLIQT 241
Query: 330 LGEE----KCIVFTSSVESTHRLCTLLNHF 355
+E I+FT + + L +L F
Sbjct: 242 FQDEHEDWSIIIFTKTCKECQILNMMLRKF 271
>ASPGD|ASPL0000000390 [details] [associations]
symbol:AN6374 species:162425 "Emericella nidulans"
[GO:0000463 "maturation of LSU-rRNA from tricistronic rRNA
transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0005829 "cytosol" evidence=IEA] [GO:0004004 "ATP-dependent RNA
helicase activity" evidence=IEA] [GO:0033680 "ATP-dependent DNA/RNA
helicase activity" evidence=IEA] [GO:0004003 "ATP-dependent DNA
helicase activity" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0003723 EMBL:AACD01000107 EMBL:BN001301 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 KO:K14810
RefSeq:XP_663978.1 ProteinModelPortal:Q5AZA6 STRING:Q5AZA6
EnsemblFungi:CADANIAT00006610 GeneID:2871271 KEGG:ani:AN6374.2
HOGENOM:HOG000253015 OMA:TFLMSAT OrthoDB:EOG4DFSWQ Uniprot:Q5AZA6
Length = 610
Score = 187 (70.9 bits), Expect = 4.2e-15, Sum P(2) = 4.2e-15
Identities = 61/186 (32%), Positives = 96/186 (51%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQT- 93
LDPRL+ AL S PVQ + I L +D+ + TGSGKT +Y LPI+QT
Sbjct: 35 LDPRLRQALVKEKFSKPTPVQA----KAIPLALEGKDILARAKTGSGKTAAYVLPILQTI 90
Query: 94 LSNRAV----RCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELI 149
L +A+ + L+++PTR+LA QV+ V A G V ++ ++S+ +
Sbjct: 91 LQKKAIDPSMKATTGLILVPTRELAEQVQKVITTFAAFCGKDVRSV----NLTQKVSDAV 146
Query: 150 KRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRL 209
++ L Y P DI+V+TP R++ ++ T +LE+L +LV+DE D +
Sbjct: 147 QKAMLAD---Y-P-----------DIVVSTPARVIANLG-TSALSLENLTHLVIDEADLV 190
Query: 210 LREAYQ 215
L Y+
Sbjct: 191 LSYGYE 196
Score = 76 (31.8 bits), Expect = 4.2e-15, Sum P(2) = 4.2e-15
Identities = 27/98 (27%), Positives = 47/98 (47%)
Query: 262 KPYPRLVK-MVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLIC--ESKL 318
K PR V+ ++SATLT + + L L P+ L E + + + + C + K
Sbjct: 204 KAIPRGVQTFLMSATLTAEVDTLKGLFCRSPVILKL-EDKDDHGAGVSQFVVKCAEDEKF 262
Query: 319 KPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFG 356
Y++ LQ + + K I+F ++ ++RL L FG
Sbjct: 263 LLTYVIFKLQLI-KGKVIIFVGDIDRSYRLKLFLEQFG 299
>WB|WBGene00012059 [details] [associations]
symbol:T26G10.1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0040007 "growth" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] [GO:0040010 "positive regulation of
growth rate" evidence=IMP] [GO:0010171 "body morphogenesis"
evidence=IMP] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0040035 "hermaphrodite genitalia
development" evidence=IMP] [GO:0006915 "apoptotic process"
evidence=IMP] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0009792 GO:GO:0040007 GO:GO:0040010 GO:GO:0006915
GO:GO:0002119 GO:GO:0010171 GO:GO:0003723 GO:GO:0040035
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268802 GeneTree:ENSGT00670000098028 KO:K14777
OMA:IFIPSKF EMBL:Z29115 PIR:S40731 RefSeq:NP_499069.1
ProteinModelPortal:P34580 SMR:P34580 STRING:P34580 PaxDb:P34580
EnsemblMetazoa:T26G10.1 GeneID:176321 KEGG:cel:CELE_T26G10.1
UCSC:T26G10.1 CTD:176321 WormBase:T26G10.1 InParanoid:P34580
NextBio:892086 Uniprot:P34580
Length = 489
Score = 134 (52.2 bits), Expect = 4.9e-15, Sum P(2) = 4.9e-15
Identities = 31/97 (31%), Positives = 54/97 (55%)
Query: 58 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQV 117
+ Q + L +D+ + TGSGKT ++A+P++Q+L + + LV+ PTR+LA Q+
Sbjct: 70 IQQAALPHALQGKDVIGLAETGSGKTGAFAIPVLQSLLDHP-QAFFCLVLTPTRELAFQI 128
Query: 118 KDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKL 154
F A+ +GL + VG +A + L +RP +
Sbjct: 129 GQQFEALGSGIGLIAAVIVGGVDMAAQAMALARRPHI 165
Score = 131 (51.2 bits), Expect = 4.9e-15, Sum P(2) = 4.9e-15
Identities = 33/89 (37%), Positives = 49/89 (55%)
Query: 175 ILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQ-LTRSDNENRF 233
I+VATPGRL+DH+ T+GF L+ L +L++DE DR+L ++ L +L+ + R F
Sbjct: 165 IIVATPGRLVDHLENTKGFNLKALKFLIMDEADRILNMDFEVELDKILKVIPRERRTYLF 224
Query: 234 SDASTFLPSAF--GSLKTIRRCGVERGFK 260
S T S SL+ R V +K
Sbjct: 225 SATMTKKVSKLERASLRDPARVSVSSRYK 253
Score = 107 (42.7 bits), Expect = 1.5e-12, Sum P(2) = 1.5e-12
Identities = 29/96 (30%), Positives = 48/96 (50%)
Query: 262 KPYPRLVKMVL-SATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKP 320
K PR + L SAT+T+ +KL + L P ++ +RYK + L+ + + +K K
Sbjct: 213 KVIPRERRTYLFSATMTKKVSKLERASLRDPARVSVS-SRYKTVDNLKQHYIFVPNKYKE 271
Query: 321 LYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFG 356
YLV LL IVF ++ +T ++ +L G
Sbjct: 272 TYLVYLLNEHAGNSAIVFCATCATTMQIAVMLRQLG 307
>UNIPROTKB|Q8EDC4 [details] [associations]
symbol:SO_2838 "ATP-dependent RNA helicase DEAD box family"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
ProtClustDB:CLSK869483 RefSeq:NP_718410.1 ProteinModelPortal:Q8EDC4
GeneID:1170534 KEGG:son:SO_2838 PATRIC:23525314 OMA:LAGHDIF
Uniprot:Q8EDC4
Length = 449
Score = 151 (58.2 bits), Expect = 5.9e-15, Sum P(3) = 5.9e-15
Identities = 43/121 (35%), Positives = 66/121 (54%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQ-T 93
LD RL +L++MGI++ P A+ ++ + L +DL +S TGSGKTL++ LP +Q
Sbjct: 8 LDQRLLQSLKHMGIAT--PT--AIQEQALPIALAGKDLMASSKTGSGKTLAFLLPALQRV 63
Query: 94 LSNRAV--RCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKR 151
+S RA+ R R L++LPTR+LA QV + +G + D+ L K
Sbjct: 64 ISTRALSKRDPRVLILLPTRELAHQVYSQLRLLVANTQYKAISVLGGENFNDQAKALAKE 123
Query: 152 P 152
P
Sbjct: 124 P 124
Score = 81 (33.6 bits), Expect = 5.9e-15, Sum P(3) = 5.9e-15
Identities = 22/69 (31%), Positives = 35/69 (50%)
Query: 164 DVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQ 223
D + L +VATPGR+ DH+ F L L L++DE DR+L + L + +
Sbjct: 115 DQAKALAKEPHFIVATPGRIADHLEQKNLF-LNGLELLILDEADRMLDLGFAPQLKAINE 173
Query: 224 LTRSDNENR 232
+D++ R
Sbjct: 174 A--ADHKRR 180
Score = 66 (28.3 bits), Expect = 5.9e-15, Sum P(3) = 5.9e-15
Identities = 25/95 (26%), Positives = 43/95 (45%)
Query: 264 YPRLVKMVLSATLTQDP-NKLAQLDLHHPLFLTTGETRYKLPERLESYKLICES-KLKPL 321
+ R ++ SATL N++A L +PL + G T + + + +C+ K
Sbjct: 177 HKRRQTLMFSATLDHSEINEIAAALLKNPLHVAIG-TAHAEHQDISQRIYLCDHLDHKEA 235
Query: 322 YLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFG 356
L LL ++ I+FT++ T RL L+ G
Sbjct: 236 LLSRLLSDESHKQVIIFTATRADTERLAAKLSAQG 270
>TIGR_CMR|SO_2838 [details] [associations]
symbol:SO_2838 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
ProtClustDB:CLSK869483 RefSeq:NP_718410.1 ProteinModelPortal:Q8EDC4
GeneID:1170534 KEGG:son:SO_2838 PATRIC:23525314 OMA:LAGHDIF
Uniprot:Q8EDC4
Length = 449
Score = 151 (58.2 bits), Expect = 5.9e-15, Sum P(3) = 5.9e-15
Identities = 43/121 (35%), Positives = 66/121 (54%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQ-T 93
LD RL +L++MGI++ P A+ ++ + L +DL +S TGSGKTL++ LP +Q
Sbjct: 8 LDQRLLQSLKHMGIAT--PT--AIQEQALPIALAGKDLMASSKTGSGKTLAFLLPALQRV 63
Query: 94 LSNRAV--RCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKR 151
+S RA+ R R L++LPTR+LA QV + +G + D+ L K
Sbjct: 64 ISTRALSKRDPRVLILLPTRELAHQVYSQLRLLVANTQYKAISVLGGENFNDQAKALAKE 123
Query: 152 P 152
P
Sbjct: 124 P 124
Score = 81 (33.6 bits), Expect = 5.9e-15, Sum P(3) = 5.9e-15
Identities = 22/69 (31%), Positives = 35/69 (50%)
Query: 164 DVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQ 223
D + L +VATPGR+ DH+ F L L L++DE DR+L + L + +
Sbjct: 115 DQAKALAKEPHFIVATPGRIADHLEQKNLF-LNGLELLILDEADRMLDLGFAPQLKAINE 173
Query: 224 LTRSDNENR 232
+D++ R
Sbjct: 174 A--ADHKRR 180
Score = 66 (28.3 bits), Expect = 5.9e-15, Sum P(3) = 5.9e-15
Identities = 25/95 (26%), Positives = 43/95 (45%)
Query: 264 YPRLVKMVLSATLTQDP-NKLAQLDLHHPLFLTTGETRYKLPERLESYKLICES-KLKPL 321
+ R ++ SATL N++A L +PL + G T + + + +C+ K
Sbjct: 177 HKRRQTLMFSATLDHSEINEIAAALLKNPLHVAIG-TAHAEHQDISQRIYLCDHLDHKEA 235
Query: 322 YLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFG 356
L LL ++ I+FT++ T RL L+ G
Sbjct: 236 LLSRLLSDESHKQVIIFTATRADTERLAAKLSAQG 270
>FB|FBgn0032919 [details] [associations]
symbol:CG9253 species:7227 "Drosophila melanogaster"
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081
EMBL:AY121677 ProteinModelPortal:Q8MRB7 SMR:Q8MRB7 STRING:Q8MRB7
PaxDb:Q8MRB7 PRIDE:Q8MRB7 FlyBase:FBgn0032919 InParanoid:Q8MRB7
OrthoDB:EOG4V41Q7 ArrayExpress:Q8MRB7 Bgee:Q8MRB7 Uniprot:Q8MRB7
Length = 507
Score = 136 (52.9 bits), Expect = 6.6e-15, Sum P(2) = 6.6e-15
Identities = 33/97 (34%), Positives = 54/97 (55%)
Query: 58 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQV 117
+ +E I L +D+ + TGSGKT ++ALPI+ L R ALV+ PTR+LA Q+
Sbjct: 87 IQREAIPVALQGKDVIGLAETGSGKTGAFALPILHALLENPQRYF-ALVLTPTRELAFQI 145
Query: 118 KDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKL 154
+ F A+ +G+ + VG + + +L K+P +
Sbjct: 146 GEQFEALGSGIGIKCCVVVGGMDMVAQGLQLAKKPHI 182
Score = 128 (50.1 bits), Expect = 6.6e-15, Sum P(2) = 6.6e-15
Identities = 32/77 (41%), Positives = 45/77 (58%)
Query: 165 VLQELQSAVD--ILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVL 222
V Q LQ A I++ATPGRL+DH+ +GF L+ + YLV+DE DR+L ++ L +L
Sbjct: 170 VAQGLQLAKKPHIIIATPGRLVDHLENMKGFNLKAIKYLVMDEADRILNMDFEVELDKIL 229
Query: 223 Q-LTRSDNENRFSDAST 238
+ L R FS T
Sbjct: 230 KVLPRERRTFLFSATMT 246
Score = 96 (38.9 bits), Expect = 1.4e-11, Sum P(2) = 1.4e-11
Identities = 28/96 (29%), Positives = 46/96 (47%)
Query: 262 KPYPRLVKMVL-SATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKP 320
K PR + L SAT+T+ KL + L P+ + +Y+ E+L+ L K K
Sbjct: 230 KVLPRERRTFLFSATMTKKVKKLQRASLKDPVKVEVSN-KYQTVEQLQQSYLFIPVKYKD 288
Query: 321 LYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFG 356
+YLV +L L ++F S+ +T + +L G
Sbjct: 289 VYLVHILNELAGNSFMIFCSTCNNTVKTALMLRALG 324
>UNIPROTKB|F1NYX0 [details] [associations]
symbol:DDX49 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00670000098028 OMA:CQLLSMT EMBL:AADN02071779
EMBL:AADN02071780 IPI:IPI00822654 Ensembl:ENSGALT00000035055
ArrayExpress:F1NYX0 Uniprot:F1NYX0
Length = 482
Score = 145 (56.1 bits), Expect = 7.4e-15, Sum P(2) = 7.4e-15
Identities = 42/119 (35%), Positives = 62/119 (52%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCIN-SPTGSGKTLSYALPIVQT 93
L P L + MG+S PVQ + I P L RD C+ + TGSGKT ++ LP++Q
Sbjct: 12 LAPWLVEQARQMGLSRPTPVQASC----IPPILQGRD-CLGCAKTGSGKTAAFVLPVLQV 66
Query: 94 LSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRP 152
LS LV+ PTR+LA Q+ + F + +GL + VG + + EL ++P
Sbjct: 67 LSEDPYGIF-CLVLTPTRELAYQIAEQFRVLGKPLGLKDCVVVGGLDMVAQALELSRKP 124
Score = 117 (46.2 bits), Expect = 7.4e-15, Sum P(2) = 7.4e-15
Identities = 28/86 (32%), Positives = 47/86 (54%)
Query: 168 ELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREA---YQAWLPTVLQL 224
EL +++ATPGRL DH+ ++ F+L+ L +LV+DE DRLL + + A L +L+
Sbjct: 119 ELSRKPHVVIATPGRLADHLRSSNTFSLKKLKFLVLDEADRLLEQGCADFTADLEVILEA 178
Query: 225 TRSDNENRFSDASTFLPSAFGSLKTI 250
+ + A+ L LK++
Sbjct: 179 VPARRQTLLFSAT--LTDTLNELKSL 202
Score = 89 (36.4 bits), Expect = 5.9e-12, Sum P(2) = 5.9e-12
Identities = 27/90 (30%), Positives = 44/90 (48%)
Query: 270 MVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQS 329
++ SATLT N+L L ++ P F + E + Y L+ E+ +K YLV L+Q+
Sbjct: 186 LLFSATLTDTLNELKSLAMNRPFFWEAASEVRTVDELDQRYLLVPEA-VKDAYLVHLIQT 244
Query: 330 LGEE----KCIVFTSSVESTHRLCTLLNHF 355
+E I+FT + + L +L F
Sbjct: 245 FQDEHEDWSIIIFTKTCKECQILNMMLRKF 274
>RGD|2324094 [details] [associations]
symbol:Ddx55 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 55"
species:10116 "Rattus norvegicus" [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 RGD:2324094
GO:GO:0005524 GO:GO:0003723 EMBL:CH473973 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959 CTD:57696 KO:K14809
OrthoDB:EOG4WH8KN GeneTree:ENSGT00550000074969 IPI:IPI00370890
RefSeq:NP_001258255.1 UniGene:Rn.209289 Ensembl:ENSRNOT00000001387
GeneID:100362764 KEGG:rno:100362764 UCSC:RGD:2324094 Uniprot:D3ZX56
Length = 600
Score = 169 (64.5 bits), Expect = 1.0e-14, Sum P(2) = 1.0e-14
Identities = 65/214 (30%), Positives = 102/214 (47%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
L P + AL+ +G + PVQ A TI + +D+ + TGSGKTL++ +PI++ L
Sbjct: 16 LHPLVLGALRELGFLHMTPVQSA----TIPLFMRNKDVAAEAVTGSGKTLAFVIPILEIL 71
Query: 95 SNRAVRCLR----ALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIK 150
R + + A+V+ PTR+LA+Q+ +V + + S+++
Sbjct: 72 LRREEKLKKNQVGAIVITPTRELAIQIDEVLSHFTKHF--------------PQFSQILW 117
Query: 151 RPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINA-TRGFTL----EHLCYLVVDE 205
G EDV + Q +I+VATPGRL D G L + L LV+DE
Sbjct: 118 IGGRNPG-----EDVERFKQHGGNIIVATPGRLEDMFRRKAEGLDLASYVKSLDVLVLDE 172
Query: 206 TDRLLREAYQAWLPTVLQ-LTRSDNENRFSDAST 238
DRLL ++A + T+L+ L + FS T
Sbjct: 173 ADRLLDMGFEASINTILEFLPKQRRTGLFSATQT 206
Score = 92 (37.4 bits), Expect = 1.0e-14, Sum P(2) = 1.0e-14
Identities = 26/77 (33%), Positives = 43/77 (55%)
Query: 271 VLSATLTQDPNKLAQLDLHHPLFLTTGE------TRYKLPERLESYKLICESKLKPLYLV 324
+ SAT TQ+ L + L +P+ ++ E + K P RLE++ +IC++ K LV
Sbjct: 200 LFSATQTQEVENLVRAGLRNPVRISVKEKGVAASSTQKTPSRLENHYMICKADEKFNQLV 259
Query: 325 ALLQSLGEEKCIVFTSS 341
L+S +EK +VF S+
Sbjct: 260 HFLRSRQQEKHLVFFST 276
>UNIPROTKB|I3LQ10 [details] [associations]
symbol:LOC100626268 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00550000074997 Ensembl:ENSSSCT00000028964 OMA:RYLVALC
Uniprot:I3LQ10
Length = 684
Score = 191 (72.3 bits), Expect = 1.1e-14, Sum P(2) = 1.1e-14
Identities = 57/176 (32%), Positives = 93/176 (52%)
Query: 52 FPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL--SNRAVRCLRALVVLP 109
F + + I GL +D+C + TG+GKT ++ALP+++ L R R LV++P
Sbjct: 231 FKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVLERLIYKPRQAPVTRVLVLVP 290
Query: 110 TRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQEL 169
TR+L +QV V +A QSS+ + I L AG D + L
Sbjct: 291 TRELGIQVHSVTKQLA------------QSSLC--VITTISG--LFAG-GLDVKSQEAAL 333
Query: 170 QSAV-DILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQL 224
++A DIL+ATPGRL+DH++ F L + L++DE DR+L E ++ + ++++
Sbjct: 334 RAAXPDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRM 389
Score = 69 (29.3 bits), Expect = 1.1e-14, Sum P(2) = 1.1e-14
Identities = 25/107 (23%), Positives = 48/107 (44%)
Query: 270 MVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKL--KPLYLVALL 327
M+ SAT+T + LA + L +P+ + P + + I ++ + + ALL
Sbjct: 397 MLFSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFIRIRPNREGDREAIVAALL 456
Query: 328 QSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVR 374
+ ++FT + + HR+ LL G +++ E G Q+ R
Sbjct: 457 MRTFTDHVMLFTQTKKQAHRMHILLGLMG---LQVGELHGNLSQTQR 500
>UNIPROTKB|F1NJA0 [details] [associations]
symbol:DDX55 "ATP-dependent RNA helicase DDX55"
species:9031 "Gallus gallus" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313
Pfam:PF13959 GeneTree:ENSGT00550000074969 IPI:IPI00590534
OMA:CACVEYW EMBL:AADN02034882 Ensembl:ENSGALT00000005224
Uniprot:F1NJA0
Length = 591
Score = 167 (63.8 bits), Expect = 1.7e-14, Sum P(2) = 1.7e-14
Identities = 67/219 (30%), Positives = 106/219 (48%)
Query: 32 LPC-LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPI 90
LP L P + +ALQ++G + PVQ A TI + +D+ + TGSGKTL++ +PI
Sbjct: 12 LPVPLSPGVLLALQDLGFDRMTPVQSA----TIPLFMSNKDVAAEAVTGSGKTLAFVIPI 67
Query: 91 VQTLSNRAVRCLR----ALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEIS 146
++ L R + + A+++ PTR+LA+Q+ +V + S
Sbjct: 68 LEILLRREEKLKKMQVGAIIITPTRELAIQIDEVLTHFTKHF--------------PKFS 113
Query: 147 ELIKRPKLEAGICYDP-EDVLQELQSAVDILVATPGRLMDHINATR-GFTL----EHLCY 200
+++ L G +P EDV + + +I+VATPGRL D G L + L
Sbjct: 114 QIL----LIGG--RNPMEDVEKFKEHGGNIIVATPGRLEDLFRRKADGLDLASCVKSLDV 167
Query: 201 LVVDETDRLLREAYQAWLPTVLQ-LTRSDNENRFSDAST 238
LV+DE DRLL +++ L +L L + FS T
Sbjct: 168 LVLDEADRLLDMGFESSLNAILAFLPKQRRTGLFSATQT 206
Score = 92 (37.4 bits), Expect = 1.7e-14, Sum P(2) = 1.7e-14
Identities = 31/101 (30%), Positives = 51/101 (50%)
Query: 271 VLSATLTQDPNKLAQLDLHHPLFLTTGE------TRYKLPERLESYKLICESKLKPLYLV 324
+ SAT TQ+ L + L +P+ ++ E K P RLE+Y +IC++ K LV
Sbjct: 200 LFSATQTQEVENLVRAGLRNPVRISVKEKGVAATNTQKTPTRLENYYMICKADEKFNQLV 259
Query: 325 ALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGE-LRIKIKE 364
L+ +EK +VF S+ C + ++G+ L IK+
Sbjct: 260 HFLRQHKQEKHLVFFST-------CACVEYYGKALESLIKQ 293
>TAIR|locus:2087852 [details] [associations]
symbol:PMH2 "putative mitochondrial RNA helicase 2"
species:3702 "Arabidopsis thaliana" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISM] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA;ISS] [GO:0005739 "mitochondrion"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005618
"cell wall" evidence=IDA] [GO:0000373 "Group II intron splicing"
evidence=IMP] [GO:0009409 "response to cold" evidence=IEP]
[GO:0043234 "protein complex" evidence=IDA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005739 GO:GO:0005524
GO:GO:0005618 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0043234
GO:GO:0005730 GO:GO:0009409 GO:GO:0003723 EMBL:AB022215
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GO:GO:0000373 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
EMBL:AY062502 EMBL:AY093256 IPI:IPI00524382 RefSeq:NP_188872.2
UniGene:At.27322 ProteinModelPortal:Q9LUW5 SMR:Q9LUW5 STRING:Q9LUW5
PaxDb:Q9LUW5 PRIDE:Q9LUW5 EnsemblPlants:AT3G22330.1 GeneID:821802
KEGG:ath:AT3G22330 GeneFarm:1033 TAIR:At3g22330
HOGENOM:HOG000268800 InParanoid:Q9LUW5 OMA:HGRGRNP PhylomeDB:Q9LUW5
ProtClustDB:CLSN2684125 Genevestigator:Q9LUW5 GermOnline:AT3G22330
Uniprot:Q9LUW5
Length = 616
Score = 140 (54.3 bits), Expect = 1.9e-14, Sum P(3) = 1.9e-14
Identities = 39/112 (34%), Positives = 60/112 (53%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
+ P + AL + GI LFP+Q AV + P + RD+ + TG+GKTL++ +PI+ +
Sbjct: 111 ISPEIVKALSSKGIEKLFPIQKAVLE----PAMEGRDMIGRARTGTGKTLAFGIPIIDKI 166
Query: 95 SNRAVRCLRA-----LVVLPTRDLALQVKDVFAAIAPAVG---LSVGLAVGQ 138
+ R LV+ PTR+LA QV+ F AP++ L G +GQ
Sbjct: 167 IKYNAKHGRGRNPLCLVLAPTRELARQVEKEFRESAPSLDTICLYGGTPIGQ 218
Score = 86 (35.3 bits), Expect = 1.9e-14, Sum P(3) = 1.9e-14
Identities = 23/83 (27%), Positives = 45/83 (54%)
Query: 166 LQELQSAVDILVATPGRLMDHINATRG-FTLEHLCYLVVDETDRLLREAYQAWLPTVLQL 224
+++L VD+ V TPGR++D + RG L + ++V+DE D++L+ + + +L+
Sbjct: 220 MRQLDYGVDVAVGTPGRVIDLMK--RGALNLSEVQFVVLDEADQMLQVGFAEDVEIILEK 277
Query: 225 TRSDNENRFSDASTFLPSAFGSL 247
++ A+ +PS SL
Sbjct: 278 LPEKRQSMMFSAT--MPSWIRSL 298
Score = 75 (31.5 bits), Expect = 1.9e-14, Sum P(3) = 1.9e-14
Identities = 23/81 (28%), Positives = 41/81 (50%)
Query: 270 MVLSATLTQDPNKLAQLDLHHPLFLT-TGETRYKLPERLESYKLICESKLKPLYLVALLQ 328
M+ SAT+ L + L++PL + G++ KL + + +Y +I +S + + L+
Sbjct: 285 MMFSATMPSWIRSLTKKYLNNPLTVDLVGDSDQKLADGITTYSIIADSYGRASIIGPLVT 344
Query: 329 SLGEE-KCIVFTSSVESTHRL 348
+ KCIVFT + RL
Sbjct: 345 EHAKGGKCIVFTQTKRDADRL 365
>UNIPROTKB|F1MW45 [details] [associations]
symbol:DDX55 "ATP-dependent RNA helicase DDX55"
species:9913 "Bos taurus" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313
Pfam:PF13959 IPI:IPI00726158 UniGene:Bt.74315
GeneTree:ENSGT00550000074969 OMA:CACVEYW EMBL:DAAA02045235
Ensembl:ENSBTAT00000009556 Uniprot:F1MW45
Length = 601
Score = 169 (64.5 bits), Expect = 3.5e-14, Sum P(2) = 3.5e-14
Identities = 68/221 (30%), Positives = 106/221 (47%)
Query: 30 DHLPC-LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYAL 88
+ LP L P++ L+ +G + PVQ A TI + +D+ + TGSGKTL++ +
Sbjct: 10 ESLPVPLHPQVLSVLRELGFPYMTPVQSA----TIPLFMKNKDVAAEAVTGSGKTLAFVI 65
Query: 89 PIVQTLSNRAVRCLR----ALVVLPTRDLALQVKDVFAAIA-PAVGLSVGLAVGQSSIAD 143
PIV+ L R + + A+++ PTR+LA+Q+++V + P S L +G
Sbjct: 66 PIVEILLRREEKFKKSQVGAIIITPTRELAVQIEEVLSHFTKPFPQFSQILWIGG----- 120
Query: 144 EISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINA-TRGFTL----EHL 198
+ P G EDV + + +I+VATPGRL D G L L
Sbjct: 121 ------RNP----G-----EDVARFKELGGNIIVATPGRLEDMFRRKAEGLDLASCVRSL 165
Query: 199 CYLVVDETDRLLREAYQAWLPTVLQ-LTRSDNENRFSDAST 238
LV+DE DRLL ++ + T+L+ L + FS T
Sbjct: 166 EVLVLDEADRLLDMGFETSINTILEFLPKQRRTGLFSATQT 206
Score = 87 (35.7 bits), Expect = 3.5e-14, Sum P(2) = 3.5e-14
Identities = 24/77 (31%), Positives = 43/77 (55%)
Query: 271 VLSATLTQDPNKLAQLDLHHPLFLTTGE------TRYKLPERLESYKLICESKLKPLYLV 324
+ SAT TQ+ L + L +P+ ++ E + K P RLE++ ++C++ K LV
Sbjct: 200 LFSATQTQEVENLVRAGLRNPVRISVKEKGVAASSTQKTPSRLENHYMVCKADEKFNQLV 259
Query: 325 ALLQSLGEEKCIVFTSS 341
L++ +EK +VF S+
Sbjct: 260 HFLRNHKQEKHLVFFST 276
>UNIPROTKB|Q5ZLN8 [details] [associations]
symbol:DDX55 "ATP-dependent RNA helicase DDX55"
species:9031 "Gallus gallus" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
InterPro:IPR025313 Pfam:PF13959 HSSP:P26196 CTD:57696
HOGENOM:HOG000268803 HOVERGEN:HBG107796 KO:K14809 OrthoDB:EOG4WH8KN
EMBL:AJ719696 IPI:IPI00590534 RefSeq:NP_001006185.1
UniGene:Gga.42731 ProteinModelPortal:Q5ZLN8 STRING:Q5ZLN8
PRIDE:Q5ZLN8 GeneID:416820 KEGG:gga:416820 InParanoid:Q5ZLN8
NextBio:20820225 Uniprot:Q5ZLN8
Length = 591
Score = 164 (62.8 bits), Expect = 3.7e-14, Sum P(2) = 3.7e-14
Identities = 67/219 (30%), Positives = 105/219 (47%)
Query: 32 LP-CLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPI 90
LP L P + ALQ++G + PVQ A TI + +D+ + TGSGKTL++ +PI
Sbjct: 12 LPVALSPGVLRALQDLGFDRMTPVQSA----TIPLFMSNKDVAAEAVTGSGKTLAFVIPI 67
Query: 91 VQTLSNRAVRCLR----ALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEIS 146
++ L R + + A+++ PTR+LA+Q+ +V + S
Sbjct: 68 LEILLRREEKLKKMQVGAIIITPTRELAIQIDEVLTHFTKHF--------------PKFS 113
Query: 147 ELIKRPKLEAGICYDP-EDVLQELQSAVDILVATPGRLMDHINATR-GFTL----EHLCY 200
+++ L G +P EDV + + +I+VATPGRL D G L + L
Sbjct: 114 QIL----LIGG--RNPMEDVEKFKEHGGNIIVATPGRLEDLFRRKADGLDLASCVKSLDV 167
Query: 201 LVVDETDRLLREAYQAWLPTVLQ-LTRSDNENRFSDAST 238
LV+DE DRLL +++ L +L L + FS T
Sbjct: 168 LVLDEADRLLDMGFESSLNAILAFLPKQRRTGLFSATQT 206
Score = 92 (37.4 bits), Expect = 3.7e-14, Sum P(2) = 3.7e-14
Identities = 31/101 (30%), Positives = 51/101 (50%)
Query: 271 VLSATLTQDPNKLAQLDLHHPLFLTTGE------TRYKLPERLESYKLICESKLKPLYLV 324
+ SAT TQ+ L + L +P+ ++ E K P RLE+Y +IC++ K LV
Sbjct: 200 LFSATQTQEVENLVRAGLRNPVRISVKEKGVAATNTQKTPTRLENYYMICKADEKFNQLV 259
Query: 325 ALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGE-LRIKIKE 364
L+ +EK +VF S+ C + ++G+ L IK+
Sbjct: 260 HFLRQHKQEKHLVFFST-------CACVEYYGKALESLIKQ 293
>TAIR|locus:504955106 [details] [associations]
symbol:emb1138 "embryo defective 1138" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0009507 "chloroplast"
evidence=ISM;IDA] [GO:0009793 "embryo development ending in seed
dormancy" evidence=NAS] [GO:0009570 "chloroplast stroma"
evidence=IDA] [GO:0016020 "membrane" evidence=IDA] [GO:0009941
"chloroplast envelope" evidence=IDA] InterPro:IPR001650
InterPro:IPR001878 InterPro:IPR011545 InterPro:IPR012562
Pfam:PF00098 Pfam:PF00270 Pfam:PF00271 Pfam:PF08152 PROSITE:PS00039
PROSITE:PS50158 PROSITE:PS51194 SMART:SM00343 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR
GO:GO:0009570 GO:GO:0016020 GO:GO:0046872 GO:GO:0008270
GO:GO:0009941 GO:GO:0003723 EMBL:AF058914 Gene3D:4.10.60.10
SUPFAM:SSF57756 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268805 UniGene:At.23875 EMBL:AJ010457 EMBL:AC137518
EMBL:AY080625 EMBL:AY091068 EMBL:AY094485 EMBL:AY123000
EMBL:AY128278 EMBL:BT000713 EMBL:BT002289 EMBL:BT002456
EMBL:AY102126 EMBL:BT004533 EMBL:AK229821 IPI:IPI00523172
IPI:IPI00656967 PIR:T01202 PIR:T51738 RefSeq:NP_001031943.1
RefSeq:NP_680225.2 UniGene:At.66764 ProteinModelPortal:Q8L7S8
SMR:Q8L7S8 STRING:Q8L7S8 PaxDb:Q8L7S8 PRIDE:Q8L7S8
EnsemblPlants:AT5G26742.2 GeneID:832713 KEGG:ath:AT5G26742
GeneFarm:1570 TAIR:At5g26742 InParanoid:Q8L7S8 OMA:ISHEQGW
PhylomeDB:Q8L7S8 ProtClustDB:CLSN2680279 Genevestigator:Q8L7S8
Uniprot:Q8L7S8
Length = 748
Score = 187 (70.9 bits), Expect = 6.9e-14, Sum P(2) = 6.9e-14
Identities = 64/198 (32%), Positives = 101/198 (51%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
L RL+ +L+ GI+ LFP+Q AV + P L RD+ + TG+GKTL++ +PI++ L
Sbjct: 109 LPQRLEESLEKRGITHLFPIQRAV----LVPALQGRDIIARAKTGTGKTLAFGIPIIKRL 164
Query: 95 SN---------RAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEI 145
+ R+ R + LV+ PTR+LA QV+ AP LS G +
Sbjct: 165 TEEAGDYTAFRRSGRLPKFLVLAPTRELAKQVEKEIKESAPY--LSTVCVYGG------V 216
Query: 146 SELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDE 205
S I++ L G VD++V TPGR++D I R L + YLV+DE
Sbjct: 217 SYTIQQSALTRG---------------VDVVVGTPGRIIDLIEG-RSLKLGEVEYLVLDE 260
Query: 206 TDRLLREAYQAWLPTVLQ 223
D++L ++ + ++L+
Sbjct: 261 ADQMLAVGFEEAVESILE 278
Score = 67 (28.6 bits), Expect = 6.9e-14, Sum P(2) = 6.9e-14
Identities = 29/102 (28%), Positives = 46/102 (45%)
Query: 255 VERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLT-TGETRYKLPERLESYKLI 313
VE ++ P R M+ SAT+ KLA+ L +PL + G+ KL E ++ Y +
Sbjct: 273 VESILENLPTKRQ-SMLFSATMPTWVKKLARKYLDNPLNIDLVGDQDEKLAEGIKLYAIA 331
Query: 314 CESKLKPLYLVALLQSLGEE-KCIVFTSSVESTHRLCTLLNH 354
S K L L+ + K IVFT + + L++
Sbjct: 332 TTSTSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALSN 373
>CGD|CAL0000056 [details] [associations]
symbol:orf19.7546 species:5476 "Candida albicans" [GO:0005634
"nucleus" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
[GO:0000462 "maturation of SSU-rRNA from tricistronic rRNA
transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA]
[GO:0008186 "RNA-dependent ATPase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0003723
EMBL:AACQ01000032 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K14777 EMBL:AR550432 RefSeq:XP_719308.1
ProteinModelPortal:Q5ACU6 SMR:Q5ACU6 STRING:Q5ACU6 GeneID:3639008
KEGG:cal:CaO19.7546 Uniprot:Q5ACU6
Length = 539
Score = 166 (63.5 bits), Expect = 1.1e-13, Sum P(2) = 1.1e-13
Identities = 44/136 (32%), Positives = 76/136 (55%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
L P L ++++M + P+Q E I L +D+ + TGSGKT ++A+PI+Q+L
Sbjct: 130 LVPDLLESIESMKFTKPTPIQ----SEAIPHALEGKDIIGLAQTGSGKTAAFAIPILQSL 185
Query: 95 SNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKL 154
+ A + ALV+ PTR+L Q+KD F A+ ++GL VG + D+ +L+++P +
Sbjct: 186 WH-AQQPYFALVLAPTRELTFQIKDTFDALGSSMGLRSSCIVGGMDMMDQARDLMRKPHV 244
Query: 155 EAGICYDPEDVLQELQ 170
I P ++ L+
Sbjct: 245 ---IVATPGRIMDHLE 257
Score = 139 (54.0 bits), Expect = 1.3e-10, Sum P(2) = 1.3e-10
Identities = 28/64 (43%), Positives = 43/64 (67%)
Query: 161 DPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPT 220
D D ++L ++VATPGR+MDH+ T+GF+L++L YLV+DE DRLL + L
Sbjct: 230 DMMDQARDLMRKPHVIVATPGRIMDHLEHTKGFSLKNLKYLVMDEADRLLDMDFGPALDK 289
Query: 221 VLQL 224
+L++
Sbjct: 290 ILKV 293
Score = 84 (34.6 bits), Expect = 1.1e-13, Sum P(2) = 1.1e-13
Identities = 23/86 (26%), Positives = 38/86 (44%)
Query: 271 VLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSL 330
+ SAT+T KL + LH+P+ + ++Y+ + L ++ K L+ LL
Sbjct: 302 LFSATMTNKIEKLQRASLHNPVRVAVS-SKYQTADNLVQSMMLVNDGYKNTILIHLLNEF 360
Query: 331 GEEKCIVFTSSVESTHRLCTLLNHFG 356
+ IVFT +V R L G
Sbjct: 361 MGKSIIVFTRTVAHAQRTALLARILG 386
>UNIPROTKB|Q2NL08 [details] [associations]
symbol:DDX55 "ATP-dependent RNA helicase DDX55"
species:9913 "Bos taurus" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
InterPro:IPR025313 Pfam:PF13959 EMBL:BC111255 IPI:IPI00726158
RefSeq:NP_001039472.1 UniGene:Bt.74315 PRIDE:Q2NL08 GeneID:508581
KEGG:bta:508581 CTD:57696 HOGENOM:HOG000268803 HOVERGEN:HBG107796
InParanoid:Q2NL08 KO:K14809 OrthoDB:EOG4WH8KN NextBio:20868584
Uniprot:Q2NL08
Length = 601
Score = 164 (62.8 bits), Expect = 1.3e-13, Sum P(2) = 1.3e-13
Identities = 67/221 (30%), Positives = 105/221 (47%)
Query: 30 DHLPC-LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYAL 88
+ LP L P++ L+ +G + PVQ A TI + +D+ + TGSGKTL++ +
Sbjct: 10 ESLPVPLHPKVLSVLRELGFPYMTPVQSA----TIPLFMKNKDVAAEAVTGSGKTLAFVI 65
Query: 89 PIVQTLSNRAVRCLR----ALVVLPTRDLALQVKDVFAAIA-PAVGLSVGLAVGQSSIAD 143
PI + L R + + A+++ PTR+LA+Q+++V + P S L +G
Sbjct: 66 PIEEILLRREEKFKKSQVGAIIITPTRELAVQIEEVLSHFTKPFPQFSQILWIGG----- 120
Query: 144 EISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINA-TRGFTL----EHL 198
+ P G EDV + + +I+VATPGRL D G L L
Sbjct: 121 ------RNP----G-----EDVARFKELGGNIIVATPGRLEDMFRRKAEGLDLASCVRSL 165
Query: 199 CYLVVDETDRLLREAYQAWLPTVLQ-LTRSDNENRFSDAST 238
LV+DE DRLL ++ + T+L+ L + FS T
Sbjct: 166 EVLVLDEADRLLDMGFETSINTILEFLPKQRRTGLFSATQT 206
Score = 87 (35.7 bits), Expect = 1.3e-13, Sum P(2) = 1.3e-13
Identities = 24/77 (31%), Positives = 43/77 (55%)
Query: 271 VLSATLTQDPNKLAQLDLHHPLFLTTGE------TRYKLPERLESYKLICESKLKPLYLV 324
+ SAT TQ+ L + L +P+ ++ E + K P RLE++ ++C++ K LV
Sbjct: 200 LFSATQTQEVENLVRAGLRNPVRISVKEKGVAASSTQKTPSRLENHYMVCKADEKFNQLV 259
Query: 325 ALLQSLGEEKCIVFTSS 341
L++ +EK +VF S+
Sbjct: 260 HFLRNHKQEKHLVFFST 276
>UNIPROTKB|D4A824 [details] [associations]
symbol:Ddx18 "Protein Ddx18" species:10116 "Rattus
norvegicus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 RGD:1549712 GO:GO:0005524 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
EMBL:AC128353 IPI:IPI00393022 Ensembl:ENSRNOT00000028172
ArrayExpress:D4A824 Uniprot:D4A824
Length = 662
Score = 132 (51.5 bits), Expect = 1.3e-13, Sum P(2) = 1.3e-13
Identities = 28/74 (37%), Positives = 47/74 (63%)
Query: 166 LQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLT 225
+Q+L + ++I+VATPGRL+DH+ T GF ++L LV+DE DR+L ++ L +++L
Sbjct: 287 VQKLLNGINIVVATPGRLLDHMQNTPGFMYKNLQCLVIDEADRILDVGFEEELKQIIKLL 346
Query: 226 RSDNENR-FSDAST 238
+ + FS T
Sbjct: 347 PARRQTMLFSATQT 360
Score = 123 (48.4 bits), Expect = 1.3e-13, Sum P(2) = 1.3e-13
Identities = 45/155 (29%), Positives = 77/155 (49%)
Query: 1 MEEAKKKSMPVLPWMRSPVDVS-LFEDCPLDHLPCL--DPRLKVALQNMGISSLFPVQVA 57
++EA +P LP + V+ FED L L + LK A++ MG + +Q
Sbjct: 147 VKEADDSEVPSLP-----LGVTGAFEDTSFASLSNLVNENTLK-AIEEMGFKHMTEIQ-- 198
Query: 58 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRA---LVVLPTRDLA 114
++I P L RDL + TGSGKTL++ +P+++ + L++ PTR+LA
Sbjct: 199 --HKSIRPLLEGRDLLAAAKTGSGKTLAFLIPVIELIVKLKFMPRNGTGVLILSPTRELA 256
Query: 115 LQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELI 149
+Q V + + GL +G S+ + E+ +L+
Sbjct: 257 MQTFGVLKELMTHHVHTYGLIMGGSNRSAEVQKLL 291
Score = 86 (35.3 bits), Expect = 8.9e-09, Sum P(2) = 8.9e-09
Identities = 36/126 (28%), Positives = 59/126 (46%)
Query: 254 GVERGFKD--KPYP-RLVKMVLSATLTQDPNKLAQLDLH-HPLFLTTGETR-YKLPERLE 308
G E K K P R M+ SAT T+ LA++ L PL++ + + + LE
Sbjct: 334 GFEEELKQIIKLLPARRQTMLFSATQTRKVEDLARISLKKEPLYVGVDDDKEVATVDGLE 393
Query: 309 SYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGL 368
++C S+ + L L L+ ++K +VF SS S LLN+ + + + G
Sbjct: 394 QGYVVCPSEKRFLLLFTFLKKNRKKKVMVFFSSCMSVKYHYELLNY---IDLPVLAIHGK 450
Query: 369 QRQSVR 374
Q+Q+ R
Sbjct: 451 QKQNKR 456
>RGD|1549712 [details] [associations]
symbol:Ddx18 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 18"
species:10116 "Rattus norvegicus" [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA;ISO] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 RGD:1549712 GO:GO:0005524
GO:GO:0005730 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
HOGENOM:HOG000268799 KO:K13179 OMA:KDGYRSY
GeneTree:ENSGT00680000100037 CTD:8886 HOVERGEN:HBG105702
OrthoDB:EOG4894MF EMBL:AC128353 EMBL:BC083919 IPI:IPI00367078
RefSeq:NP_001006997.1 UniGene:Rn.26598 STRING:Q5XHY0
Ensembl:ENSRNOT00000037203 GeneID:308490 KEGG:rno:308490
UCSC:RGD:1549712 InParanoid:Q5XHY0 NextBio:658990
Genevestigator:Q5XHY0 Uniprot:Q5XHY0
Length = 674
Score = 132 (51.5 bits), Expect = 1.4e-13, Sum P(2) = 1.4e-13
Identities = 28/74 (37%), Positives = 47/74 (63%)
Query: 166 LQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLT 225
+Q+L + ++I+VATPGRL+DH+ T GF ++L LV+DE DR+L ++ L +++L
Sbjct: 299 VQKLLNGINIVVATPGRLLDHMQNTPGFMYKNLQCLVIDEADRILDVGFEEELKQIIKLL 358
Query: 226 RSDNENR-FSDAST 238
+ + FS T
Sbjct: 359 PARRQTMLFSATQT 372
Score = 123 (48.4 bits), Expect = 1.4e-13, Sum P(2) = 1.4e-13
Identities = 45/155 (29%), Positives = 77/155 (49%)
Query: 1 MEEAKKKSMPVLPWMRSPVDVS-LFEDCPLDHLPCL--DPRLKVALQNMGISSLFPVQVA 57
++EA +P LP + V+ FED L L + LK A++ MG + +Q
Sbjct: 159 VKEADDSEVPSLP-----LGVTGAFEDTSFASLSNLVNENTLK-AIEEMGFKHMTEIQ-- 210
Query: 58 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRA---LVVLPTRDLA 114
++I P L RDL + TGSGKTL++ +P+++ + L++ PTR+LA
Sbjct: 211 --HKSIRPLLEGRDLLAAAKTGSGKTLAFLIPVIELIVKLKFMPRNGTGVLILSPTRELA 268
Query: 115 LQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELI 149
+Q V + + GL +G S+ + E+ +L+
Sbjct: 269 MQTFGVLKELMTHHVHTYGLIMGGSNRSAEVQKLL 303
Score = 86 (35.3 bits), Expect = 9.4e-09, Sum P(2) = 9.4e-09
Identities = 36/126 (28%), Positives = 59/126 (46%)
Query: 254 GVERGFKD--KPYP-RLVKMVLSATLTQDPNKLAQLDLH-HPLFLTTGETR-YKLPERLE 308
G E K K P R M+ SAT T+ LA++ L PL++ + + + LE
Sbjct: 346 GFEEELKQIIKLLPARRQTMLFSATQTRKVEDLARISLKKEPLYVGVDDDKEVATVDGLE 405
Query: 309 SYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGL 368
++C S+ + L L L+ ++K +VF SS S LLN+ + + + G
Sbjct: 406 QGYVVCPSEKRFLLLFTFLKKNRKKKVMVFFSSCMSVKYHYELLNY---IDLPVLAIHGK 462
Query: 369 QRQSVR 374
Q+Q+ R
Sbjct: 463 QKQNKR 468
>UNIPROTKB|J3QLN6 [details] [associations]
symbol:EIF4A1 "Eukaryotic initiation factor 4A-I"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR011545 Pfam:PF00270 PROSITE:PS00039
GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
EMBL:AC016876 HGNC:HGNC:3282 ChiTaRS:EIF4A1 Ensembl:ENST00000583802
Uniprot:J3QLN6
Length = 163
Score = 128 (50.1 bits), Expect = 1.5e-13, Sum P(2) = 1.5e-13
Identities = 30/102 (29%), Positives = 59/102 (57%)
Query: 57 AVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQ 116
A+ Q I P + D+ + +G+GKT ++A+ I+Q + ++ +ALV+ PTR+LA Q
Sbjct: 21 AIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIE-LDLKATQALVLAPTRELAQQ 79
Query: 117 VKDVFAAIAPAVGLSVGLAVGQSSIADEISEL-IKRPKLEAG 157
++ V A+ +G S +G +++ E+ +L ++ P + G
Sbjct: 80 IQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVG 121
Score = 76 (31.8 bits), Expect = 1.5e-13, Sum P(2) = 1.5e-13
Identities = 18/51 (35%), Positives = 31/51 (60%)
Query: 166 LQELQ-SAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQ 215
+Q+LQ A I+V TPGR+ D +N R + +++ V+DE D +L ++
Sbjct: 108 VQKLQMEAPHIIVGTPGRVFDMLNR-RYLSPKYIKMFVLDEADEMLSRGFK 157
>UNIPROTKB|Q48AV0 [details] [associations]
symbol:CPS_0042 "ATP-dependent RNA helicase, DEAD box
family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0016070
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 RefSeq:YP_266818.1 ProteinModelPortal:Q48AV0
GeneID:3521124 KEGG:cps:CPS_0042 PATRIC:21463513 OMA:AITESAY
BioCyc:CPSY167879:GI48-153-MONOMER Uniprot:Q48AV0
Length = 420
Score = 138 (53.6 bits), Expect = 1.5e-13, Sum P(2) = 1.5e-13
Identities = 37/102 (36%), Positives = 57/102 (55%)
Query: 50 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRC---LRALV 106
S + + +++I L + D+ + TG+GKT ++ALPI+Q L + C LRALV
Sbjct: 23 SAYDEPTEIQKQSIPLILAKHDVMARAQTGTGKTAAFALPILQQLIS-VQPCKPELRALV 81
Query: 107 VLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISEL 148
+ PTR+LA QV F +++G+A G S +ISEL
Sbjct: 82 LTPTRELAQQVHKSFCHYGQFTDVTIGIAYGGVSTKKQISEL 123
Score = 110 (43.8 bits), Expect = 1.5e-13, Sum P(2) = 1.5e-13
Identities = 33/98 (33%), Positives = 51/98 (52%)
Query: 157 GICY---DPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREA 213
GI Y + + EL+ VDIL+ATPGRL+D + T +L ++ LV DE DR+L
Sbjct: 108 GIAYGGVSTKKQISELKVGVDILIATPGRLLDLLR-TESVSLSNIETLVFDEADRMLDMG 166
Query: 214 YQAWLPTVLQ-LTRSDNENRFSDASTFLPSAFGSLKTI 250
++ + + Q L ++ FS +TF + K I
Sbjct: 167 FKEEIDQITQYLPKTKQTLLFS--ATFADDIYKMSKNI 202
>TIGR_CMR|CPS_0042 [details] [associations]
symbol:CPS_0042 "ATP-dependent RNA helicase, DEAD box
family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0016070
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 RefSeq:YP_266818.1 ProteinModelPortal:Q48AV0
GeneID:3521124 KEGG:cps:CPS_0042 PATRIC:21463513 OMA:AITESAY
BioCyc:CPSY167879:GI48-153-MONOMER Uniprot:Q48AV0
Length = 420
Score = 138 (53.6 bits), Expect = 1.5e-13, Sum P(2) = 1.5e-13
Identities = 37/102 (36%), Positives = 57/102 (55%)
Query: 50 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRC---LRALV 106
S + + +++I L + D+ + TG+GKT ++ALPI+Q L + C LRALV
Sbjct: 23 SAYDEPTEIQKQSIPLILAKHDVMARAQTGTGKTAAFALPILQQLIS-VQPCKPELRALV 81
Query: 107 VLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISEL 148
+ PTR+LA QV F +++G+A G S +ISEL
Sbjct: 82 LTPTRELAQQVHKSFCHYGQFTDVTIGIAYGGVSTKKQISEL 123
Score = 110 (43.8 bits), Expect = 1.5e-13, Sum P(2) = 1.5e-13
Identities = 33/98 (33%), Positives = 51/98 (52%)
Query: 157 GICY---DPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREA 213
GI Y + + EL+ VDIL+ATPGRL+D + T +L ++ LV DE DR+L
Sbjct: 108 GIAYGGVSTKKQISELKVGVDILIATPGRLLDLLR-TESVSLSNIETLVFDEADRMLDMG 166
Query: 214 YQAWLPTVLQ-LTRSDNENRFSDASTFLPSAFGSLKTI 250
++ + + Q L ++ FS +TF + K I
Sbjct: 167 FKEEIDQITQYLPKTKQTLLFS--ATFADDIYKMSKNI 202
>ZFIN|ZDB-GENE-021212-1 [details] [associations]
symbol:ddx55 "DEAD (Asp-Glu-Ala-Asp) box polypeptide
55" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0007275 "multicellular organismal development"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
ZFIN:ZDB-GENE-021212-1 GO:GO:0007275 GO:GO:0005524 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
InterPro:IPR025313 Pfam:PF13959 HSSP:P26196 CTD:57696
HOGENOM:HOG000268803 HOVERGEN:HBG107796 KO:K14809 OrthoDB:EOG4WH8KN
EMBL:AF506203 EMBL:BC059534 IPI:IPI00493927 RefSeq:NP_775336.1
UniGene:Dr.16883 ProteinModelPortal:Q8JHJ2 STRING:Q8JHJ2
GeneID:286745 KEGG:dre:286745 InParanoid:Q8JHJ2 NextBio:20806420
ArrayExpress:Q8JHJ2 Uniprot:Q8JHJ2
Length = 593
Score = 154 (59.3 bits), Expect = 1.6e-13, Sum P(2) = 1.6e-13
Identities = 63/219 (28%), Positives = 102/219 (46%)
Query: 32 LPC-LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPI 90
LP L + L+ +G + + PVQ A I + +D+ + TGSGKTL++ +P
Sbjct: 12 LPVKLHDNILQTLKELGFTYMTPVQSAC----IPLFMSNKDVAAEAVTGSGKTLAFVIPA 67
Query: 91 VQTLSNRAVRCLR----ALVVLPTRDLALQVKDVFAAIAPAVG-LSVGLAVGQSSIADEI 145
++ L R + + AL++ PTR+LA+Q+ +V + L +G S+ +++
Sbjct: 68 LEILLKREEKLKKMQVGALIITPTRELAMQISEVMGRFLQGFPQFTQILLIGGSNPIEDV 127
Query: 146 SELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATR-GFTL----EHLCY 200
+L + Q A +I++ATPGRL D G L + L
Sbjct: 128 EKL-------------------KTQGA-NIIIATPGRLEDMFRRKADGLDLATAVKSLDV 167
Query: 201 LVVDETDRLLREAYQAWLPTVL-QLTRSDNENRFSDAST 238
LV+DE DRLL ++A L T+L L + FS T
Sbjct: 168 LVLDEADRLLDMGFEASLNTILGYLPKQRRTGLFSATQT 206
Score = 97 (39.2 bits), Expect = 1.6e-13, Sum P(2) = 1.6e-13
Identities = 32/103 (31%), Positives = 52/103 (50%)
Query: 271 VLSATLTQDPNKLAQLDLHHPLFLTTGE------TRYKLPERLESYKLICESKLKPLYLV 324
+ SAT TQ+ KL + L +P+ +T E + K P +L +Y +C ++ K LV
Sbjct: 200 LFSATQTQELEKLVRAGLRNPVRITVKEKGVAASSVQKTPAKLSNYYTMCRAEEKFNTLV 259
Query: 325 ALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGE-LRIKIKEYS 366
A L+ EK +VF S+ C + +FG+ L + +K S
Sbjct: 260 AFLRQHKHEKQLVFFST-------CACVEYFGKALEVLVKNVS 295
>MGI|MGI:1914192 [details] [associations]
symbol:Ddx18 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 18"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005730 "nucleolus"
evidence=ISO] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008150 "biological_process" evidence=ND]
[GO:0016787 "hydrolase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 MGI:MGI:1914192
GO:GO:0005524 GO:GO:0005730 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
HOGENOM:HOG000268799 KO:K13179 OMA:KDGYRSY
GeneTree:ENSGT00680000100037 CTD:8886 HOVERGEN:HBG105702
OrthoDB:EOG4894MF EMBL:AK075864 EMBL:AK019845 EMBL:BC028246
EMBL:BC103776 IPI:IPI00459381 RefSeq:NP_080136.2 UniGene:Mm.44219
ProteinModelPortal:Q8K363 SMR:Q8K363 STRING:Q8K363
PhosphoSite:Q8K363 PaxDb:Q8K363 PRIDE:Q8K363
Ensembl:ENSMUST00000001724 GeneID:66942 KEGG:mmu:66942
InParanoid:Q8K363 NextBio:323084 Bgee:Q8K363 CleanEx:MM_DDX18
Genevestigator:Q8K363 GermOnline:ENSMUSG00000001674 Uniprot:Q8K363
Length = 660
Score = 133 (51.9 bits), Expect = 1.6e-13, Sum P(2) = 1.6e-13
Identities = 28/74 (37%), Positives = 47/74 (63%)
Query: 166 LQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLT 225
+Q+L + ++I+VATPGRL+DH+ T GF ++L LV+DE DR+L ++ L +++L
Sbjct: 285 VQKLLNGINIIVATPGRLLDHMQNTPGFMYKNLQCLVIDEADRILDVGFEEELKQIIKLL 344
Query: 226 RSDNENR-FSDAST 238
+ + FS T
Sbjct: 345 PARRQTMLFSATQT 358
Score = 121 (47.7 bits), Expect = 1.6e-13, Sum P(2) = 1.6e-13
Identities = 43/154 (27%), Positives = 77/154 (50%)
Query: 2 EEAKKKSMPVLPWMRSPVDVS-LFEDCPLDHLPCL--DPRLKVALQNMGISSLFPVQVAV 58
++ KK +P + P+ ++ FED L L + LK A++ MG + +Q
Sbjct: 143 DDVKKADDSEVPSL--PLGLTGAFEDTSFASLSNLVNENTLK-AIEEMGFKRMTEIQ--- 196
Query: 59 WQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRA---LVVLPTRDLAL 115
++I P L RDL + TGSGKTL++ +P+++ + L++ PTR+LA+
Sbjct: 197 -HKSIRPLLEGRDLLAAAKTGSGKTLAFLIPVIELIVKLKFMPRNGTGVLILSPTRELAM 255
Query: 116 QVKDVFAAIAPAVGLSVGLAVGQSSIADEISELI 149
Q V + + GL +G S+ + E+ +L+
Sbjct: 256 QTFGVLKELMTHHVHTYGLIMGGSNRSAEVQKLL 289
Score = 86 (35.3 bits), Expect = 1.5e-08, Sum P(2) = 1.5e-08
Identities = 36/126 (28%), Positives = 59/126 (46%)
Query: 254 GVERGFKD--KPYP-RLVKMVLSATLTQDPNKLAQLDLH-HPLFLTTGETR-YKLPERLE 308
G E K K P R M+ SAT T+ LA++ L PL++ + + + LE
Sbjct: 332 GFEEELKQIIKLLPARRQTMLFSATQTRKVEDLARISLKKEPLYVGVDDDKEVATVDGLE 391
Query: 309 SYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGL 368
++C S+ + L L L+ ++K +VF SS S LLN+ + + + G
Sbjct: 392 QGYVVCPSEKRFLLLFTFLKKNRKKKVMVFFSSCMSVKYHYELLNY---IDLPVLAIHGK 448
Query: 369 QRQSVR 374
Q+Q+ R
Sbjct: 449 QKQNKR 454
>UNIPROTKB|F1N533 [details] [associations]
symbol:DDX18 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
GeneTree:ENSGT00680000100037 EMBL:DAAA02005160 IPI:IPI00904747
Ensembl:ENSBTAT00000045489 OMA:TENKGES Uniprot:F1N533
Length = 670
Score = 132 (51.5 bits), Expect = 1.7e-13, Sum P(2) = 1.7e-13
Identities = 28/73 (38%), Positives = 46/73 (63%)
Query: 167 QELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTR 226
Q+L + ++I+VATPGRL+DH+ T GF ++L LV+DE DR+L ++ L +++L
Sbjct: 296 QKLANGINIVVATPGRLLDHMQNTPGFMYKNLQCLVIDEADRILDVGFEEELKQIIKLLP 355
Query: 227 SDNENR-FSDAST 238
+ + FS T
Sbjct: 356 TRRQTMLFSATQT 368
Score = 122 (48.0 bits), Expect = 1.7e-13, Sum P(2) = 1.7e-13
Identities = 45/152 (29%), Positives = 74/152 (48%)
Query: 2 EEAKKKSMPVLPWMRSPVDVSLFEDCPLDHLPCL--DPRLKVALQNMGISSLFPVQVAVW 59
+E + +P LP + FED D L L + LK A++ MG +++ +Q
Sbjct: 156 DEGEDSEVPSLPLGLT----GAFEDTSFDSLTNLVNENTLK-AIKEMGFTNMTEIQ---- 206
Query: 60 QETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRA---LVVLPTRDLALQ 116
++I P L RDL + TGSGKTL++ +P V+ + L++ PTR+LA+Q
Sbjct: 207 HKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVELIVKLKFMPRNGTGVLILSPTRELAMQ 266
Query: 117 VKDVFAAIAPAVGLSVGLAVGQSSIADEISEL 148
V + + GL +G S+ + E +L
Sbjct: 267 TFGVLKELMTHHVHTYGLIMGGSNRSAEAQKL 298
Score = 90 (36.7 bits), Expect = 4.6e-09, Sum P(2) = 4.6e-09
Identities = 36/126 (28%), Positives = 60/126 (47%)
Query: 254 GVERGFKD--KPYP-RLVKMVLSATLTQDPNKLAQLDLH-HPLFLTTGETRYKLP-ERLE 308
G E K K P R M+ SAT T+ LA++ L PL++ + + + LE
Sbjct: 342 GFEEELKQIIKLLPTRRQTMLFSATQTRKVEDLARISLKKEPLYVGVDDDKANATVDGLE 401
Query: 309 SYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGL 368
++C S+ + L L L+ ++K +VF SS +S LLN+ + + + G
Sbjct: 402 QGYVVCPSEKRFLLLFTFLKKNRKKKLMVFFSSCKSVKYHYELLNY---IDLPVLAIHGR 458
Query: 369 QRQSVR 374
Q+Q+ R
Sbjct: 459 QKQNKR 464
>UNIPROTKB|F1MSX0 [details] [associations]
symbol:F1MSX0 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
OMA:KDGYRSY GeneTree:ENSGT00680000100037 EMBL:DAAA02009745
IPI:IPI00903923 Ensembl:ENSBTAT00000039166 Uniprot:F1MSX0
Length = 674
Score = 132 (51.5 bits), Expect = 1.8e-13, Sum P(2) = 1.8e-13
Identities = 28/73 (38%), Positives = 46/73 (63%)
Query: 167 QELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTR 226
Q+L + ++I+VATPGRL+DH+ T GF ++L LV+DE DR+L ++ L +++L
Sbjct: 300 QKLANGINIVVATPGRLLDHMQNTPGFMYKNLQCLVIDEADRILDVGFEEELKQIIKLLP 359
Query: 227 SDNENR-FSDAST 238
+ + FS T
Sbjct: 360 TRRQTMLFSATQT 372
Score = 122 (48.0 bits), Expect = 1.8e-13, Sum P(2) = 1.8e-13
Identities = 45/152 (29%), Positives = 74/152 (48%)
Query: 2 EEAKKKSMPVLPWMRSPVDVSLFEDCPLDHLPCL--DPRLKVALQNMGISSLFPVQVAVW 59
+E + +P LP + FED D L L + LK A++ MG +++ +Q
Sbjct: 160 DEGEDSEVPSLPLGLT----GAFEDTSFDSLTNLVNENTLK-AIKEMGFTNMTEIQ---- 210
Query: 60 QETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRA---LVVLPTRDLALQ 116
++I P L RDL + TGSGKTL++ +P V+ + L++ PTR+LA+Q
Sbjct: 211 HKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVELIVKLKFMPRNGTGVLILSPTRELAMQ 270
Query: 117 VKDVFAAIAPAVGLSVGLAVGQSSIADEISEL 148
V + + GL +G S+ + E +L
Sbjct: 271 TFGVLKELMTHHVHTYGLIMGGSNRSAEAQKL 302
Score = 90 (36.7 bits), Expect = 4.7e-09, Sum P(2) = 4.7e-09
Identities = 36/126 (28%), Positives = 60/126 (47%)
Query: 254 GVERGFKD--KPYP-RLVKMVLSATLTQDPNKLAQLDLH-HPLFLTTGETRYKLP-ERLE 308
G E K K P R M+ SAT T+ LA++ L PL++ + + + LE
Sbjct: 346 GFEEELKQIIKLLPTRRQTMLFSATQTRKVEDLARISLKKEPLYVGVDDDKANATVDGLE 405
Query: 309 SYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGL 368
++C S+ + L L L+ ++K +VF SS +S LLN+ + + + G
Sbjct: 406 QGYVVCPSEKRFLLLFTFLKKNRKKKLMVFFSSCKSVKYHYELLNY---IDLPVLAIHGR 462
Query: 369 QRQSVR 374
Q+Q+ R
Sbjct: 463 QKQNKR 468
>UNIPROTKB|Q47Z59 [details] [associations]
symbol:CPS_3215 "Putative ATP-dependent RNA helicase SrmB"
species:167879 "Colwellia psychrerythraea 34H" [GO:0042254
"ribosome biogenesis" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 GO:GO:0042254 EMBL:CP000083 GenomeReviews:CP000083_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 RefSeq:YP_269911.1 ProteinModelPortal:Q47Z59
STRING:Q47Z59 GeneID:3520324 KEGG:cps:CPS_3215 PATRIC:21469413
OMA:PKFIVAT ProtClustDB:CLSK869483
BioCyc:CPSY167879:GI48-3264-MONOMER Uniprot:Q47Z59
Length = 448
Score = 147 (56.8 bits), Expect = 1.8e-13, Sum P(3) = 1.8e-13
Identities = 41/122 (33%), Positives = 63/122 (51%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
LD L +++MG + P Q+ Q+ I + DL +S TGSGKTL++ +P +Q L
Sbjct: 8 LDSALMSTIEHMGFNE--PTQIQ--QQAIPAAMAGHDLIASSKTGSGKTLAFIIPALQRL 63
Query: 95 S-NRAV--RCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKR 151
S NRA+ R R +++ PTR+LA QV L +G + D++ L K
Sbjct: 64 SKNRALSKRDPRVVILTPTRELAKQVFSQLRLFTANTQYKAVLILGGENFNDQVKVLQKE 123
Query: 152 PK 153
P+
Sbjct: 124 PE 125
Score = 97 (39.2 bits), Expect = 1.8e-13, Sum P(3) = 1.8e-13
Identities = 23/48 (47%), Positives = 32/48 (66%)
Query: 164 DVLQELQSAVDILVATPGRLMDHINATRG-FTLEHLCYLVVDETDRLL 210
D ++ LQ + +VATPGRL DH+ T+G F L L L++DE DR+L
Sbjct: 115 DQVKVLQKEPEFIVATPGRLADHL--TQGHFHLNGLELLILDEADRML 160
Score = 40 (19.1 bits), Expect = 1.8e-13, Sum P(3) = 1.8e-13
Identities = 15/32 (46%), Positives = 18/32 (56%)
Query: 325 ALLQS-LGEEKC---IVFTSSVESTHRLCTLL 352
ALLQ L EK I+FT++ T RL LL
Sbjct: 235 ALLQHFLVTEKSQQIIIFTATRSDTDRLAKLL 266
>TIGR_CMR|CPS_3215 [details] [associations]
symbol:CPS_3215 "putative ATP-dependent RNA helicase SrmB"
species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0008186
"RNA-dependent ATPase activity" evidence=ISS] [GO:0042254 "ribosome
biogenesis" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
GO:GO:0042254 EMBL:CP000083 GenomeReviews:CP000083_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 RefSeq:YP_269911.1 ProteinModelPortal:Q47Z59
STRING:Q47Z59 GeneID:3520324 KEGG:cps:CPS_3215 PATRIC:21469413
OMA:PKFIVAT ProtClustDB:CLSK869483
BioCyc:CPSY167879:GI48-3264-MONOMER Uniprot:Q47Z59
Length = 448
Score = 147 (56.8 bits), Expect = 1.8e-13, Sum P(3) = 1.8e-13
Identities = 41/122 (33%), Positives = 63/122 (51%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
LD L +++MG + P Q+ Q+ I + DL +S TGSGKTL++ +P +Q L
Sbjct: 8 LDSALMSTIEHMGFNE--PTQIQ--QQAIPAAMAGHDLIASSKTGSGKTLAFIIPALQRL 63
Query: 95 S-NRAV--RCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKR 151
S NRA+ R R +++ PTR+LA QV L +G + D++ L K
Sbjct: 64 SKNRALSKRDPRVVILTPTRELAKQVFSQLRLFTANTQYKAVLILGGENFNDQVKVLQKE 123
Query: 152 PK 153
P+
Sbjct: 124 PE 125
Score = 97 (39.2 bits), Expect = 1.8e-13, Sum P(3) = 1.8e-13
Identities = 23/48 (47%), Positives = 32/48 (66%)
Query: 164 DVLQELQSAVDILVATPGRLMDHINATRG-FTLEHLCYLVVDETDRLL 210
D ++ LQ + +VATPGRL DH+ T+G F L L L++DE DR+L
Sbjct: 115 DQVKVLQKEPEFIVATPGRLADHL--TQGHFHLNGLELLILDEADRML 160
Score = 40 (19.1 bits), Expect = 1.8e-13, Sum P(3) = 1.8e-13
Identities = 15/32 (46%), Positives = 18/32 (56%)
Query: 325 ALLQS-LGEEKC---IVFTSSVESTHRLCTLL 352
ALLQ L EK I+FT++ T RL LL
Sbjct: 235 ALLQHFLVTEKSQQIIIFTATRSDTDRLAKLL 266
>GENEDB_PFALCIPARUM|PFF1500c [details] [associations]
symbol:PFF1500c "DEAD/DEAH box ATP-dependent RNA
helicase, putative" species:5833 "Plasmodium falciparum"
[GO:0016070 "RNA metabolic process" evidence=ISS] [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003723 GO:GO:0016070
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
EMBL:AL844505 InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313
Pfam:PF13959 HOGENOM:HOG000268799 KO:K13179 OMA:KDGYRSY
RefSeq:XP_966291.1 ProteinModelPortal:C6KTE4
EnsemblProtists:PFF1500c:mRNA GeneID:3885813 KEGG:pfa:PFF1500c
EuPathDB:PlasmoDB:PF3D7_0630900 ProtClustDB:CLSZ2514457
Uniprot:C6KTE4
Length = 601
Score = 119 (46.9 bits), Expect = 2.0e-13, Sum P(3) = 2.0e-13
Identities = 24/67 (35%), Positives = 42/67 (62%)
Query: 173 VDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQ-LTRSDNEN 231
++IL+ATPGRL+DH+ T+ F ++L L++DE DRLL+ ++ + +++ L +
Sbjct: 271 INILIATPGRLLDHMQNTKEFIYKNLICLIIDEADRLLQIGFEEEINLIIKRLPKKRQTA 330
Query: 232 RFSDAST 238
FS T
Sbjct: 331 LFSATQT 337
Score = 96 (38.9 bits), Expect = 2.0e-13, Sum P(3) = 2.0e-13
Identities = 34/131 (25%), Positives = 62/131 (47%)
Query: 24 FEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKT 83
+ + + L D LK L+ + +L +Q + I L +D+ + TGSGKT
Sbjct: 145 YSELKFEELNICDA-LKKGLKELNFVTLTEIQA----KCIPHFLSGKDILGAAKTGSGKT 199
Query: 84 LSYALPIVQTLSNRAVRCLR-----ALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQ 138
L++ +P + L N ++ L L++ PTR+L LQ+ V + + + G+ +G
Sbjct: 200 LAFLVPSINILYN--IKFLPKNGTGVLIISPTRELCLQIYQVCKDLCKYIPQTNGIIIGG 257
Query: 139 SSIADEISELI 149
S +E + I
Sbjct: 258 MSRNEEKKKFI 268
Score = 78 (32.5 bits), Expect = 2.0e-13, Sum P(3) = 2.0e-13
Identities = 27/85 (31%), Positives = 41/85 (48%)
Query: 271 VLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLES-YKLICESKLKPLYLVALLQS 329
+ SAT T L +L L P+F+ T+ ERL+ Y L+ E K + L L L+
Sbjct: 331 LFSATQTTKVESLIRLSLQKPIFIEV-TTKIATVERLQQGYALVDEDK-RFLLLFTFLKK 388
Query: 330 LGEEKCIVFTSSVESTHRLCTLLNH 354
+K +VF ++ S LLN+
Sbjct: 389 NMSKKIMVFFNNCMSVQFYNDLLNY 413
Score = 42 (19.8 bits), Expect = 8.7e-10, Sum P(3) = 8.7e-10
Identities = 11/33 (33%), Positives = 16/33 (48%)
Query: 279 DPNKLAQLDLHHPLFLTTGETRYKLP-ERLESY 310
DPNKL + H +T +K+ E +SY
Sbjct: 520 DPNKLINIQSHIQSIVTKNFHLHKMAREAFKSY 552
>UNIPROTKB|C6KTE4 [details] [associations]
symbol:PFF1500c "DEAD/DEAH box ATP-dependent RNA helicase,
putative" species:36329 "Plasmodium falciparum 3D7" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003723 GO:GO:0016070 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 EMBL:AL844505 InterPro:IPR014014
PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
HOGENOM:HOG000268799 KO:K13179 OMA:KDGYRSY RefSeq:XP_966291.1
ProteinModelPortal:C6KTE4 EnsemblProtists:PFF1500c:mRNA
GeneID:3885813 KEGG:pfa:PFF1500c EuPathDB:PlasmoDB:PF3D7_0630900
ProtClustDB:CLSZ2514457 Uniprot:C6KTE4
Length = 601
Score = 119 (46.9 bits), Expect = 2.0e-13, Sum P(3) = 2.0e-13
Identities = 24/67 (35%), Positives = 42/67 (62%)
Query: 173 VDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQ-LTRSDNEN 231
++IL+ATPGRL+DH+ T+ F ++L L++DE DRLL+ ++ + +++ L +
Sbjct: 271 INILIATPGRLLDHMQNTKEFIYKNLICLIIDEADRLLQIGFEEEINLIIKRLPKKRQTA 330
Query: 232 RFSDAST 238
FS T
Sbjct: 331 LFSATQT 337
Score = 96 (38.9 bits), Expect = 2.0e-13, Sum P(3) = 2.0e-13
Identities = 34/131 (25%), Positives = 62/131 (47%)
Query: 24 FEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKT 83
+ + + L D LK L+ + +L +Q + I L +D+ + TGSGKT
Sbjct: 145 YSELKFEELNICDA-LKKGLKELNFVTLTEIQA----KCIPHFLSGKDILGAAKTGSGKT 199
Query: 84 LSYALPIVQTLSNRAVRCLR-----ALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQ 138
L++ +P + L N ++ L L++ PTR+L LQ+ V + + + G+ +G
Sbjct: 200 LAFLVPSINILYN--IKFLPKNGTGVLIISPTRELCLQIYQVCKDLCKYIPQTNGIIIGG 257
Query: 139 SSIADEISELI 149
S +E + I
Sbjct: 258 MSRNEEKKKFI 268
Score = 78 (32.5 bits), Expect = 2.0e-13, Sum P(3) = 2.0e-13
Identities = 27/85 (31%), Positives = 41/85 (48%)
Query: 271 VLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLES-YKLICESKLKPLYLVALLQS 329
+ SAT T L +L L P+F+ T+ ERL+ Y L+ E K + L L L+
Sbjct: 331 LFSATQTTKVESLIRLSLQKPIFIEV-TTKIATVERLQQGYALVDEDK-RFLLLFTFLKK 388
Query: 330 LGEEKCIVFTSSVESTHRLCTLLNH 354
+K +VF ++ S LLN+
Sbjct: 389 NMSKKIMVFFNNCMSVQFYNDLLNY 413
Score = 42 (19.8 bits), Expect = 8.7e-10, Sum P(3) = 8.7e-10
Identities = 11/33 (33%), Positives = 16/33 (48%)
Query: 279 DPNKLAQLDLHHPLFLTTGETRYKLP-ERLESY 310
DPNKL + H +T +K+ E +SY
Sbjct: 520 DPNKLINIQSHIQSIVTKNFHLHKMAREAFKSY 552
>POMBASE|SPBC543.06c [details] [associations]
symbol:dbp8 "ATP-dependent RNA helicase Dbp8
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISO] [GO:0005524 "ATP binding" evidence=ISM]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=ISO;IDA] [GO:0006364 "rRNA processing" evidence=ISO]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 PomBase:SPBC543.06c GO:GO:0005524 GO:GO:0005730
EMBL:CU329671 GenomeReviews:CU329671_GR GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K14778 HOGENOM:HOG000268802 OMA:EVRTVEQ OrthoDB:EOG4PP1RW
RefSeq:NP_596794.1 ProteinModelPortal:Q9HGM5 STRING:Q9HGM5
EnsemblFungi:SPBC543.06c.1 GeneID:2541069 KEGG:spo:SPBC543.06c
NextBio:20802183 Uniprot:Q9HGM5
Length = 453
Score = 140 (54.3 bits), Expect = 2.5e-13, Sum P(3) = 2.5e-13
Identities = 35/94 (37%), Positives = 55/94 (58%)
Query: 60 QETIGPGLFERDLCIN-SPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVK 118
QE + + E CI + TGSGKT ++ALPI++ S + + AL++ PTR+LA+Q+
Sbjct: 34 QEGVIAQILEGRNCIGGAKTGSGKTAAFALPIIEKWS-KDPSGIFALILTPTRELAIQID 92
Query: 119 DVFAAIAPAVGLSVGLAVGQSSIADEISELIKRP 152
+ FAA+ + L L VG + + +L KRP
Sbjct: 93 EQFAALGANLNLKHALIVGGMDMIRQSIDLSKRP 126
Score = 79 (32.9 bits), Expect = 2.5e-13, Sum P(3) = 2.5e-13
Identities = 20/50 (40%), Positives = 28/50 (56%)
Query: 168 ELQSAVDILVATPGRLMDHINATRGFT---LEHLCYLVVDETDRLLREAY 214
+L ++VATPGRL D I + T L + +LV+DE DRLL +
Sbjct: 121 DLSKRPHVVVATPGRLADLIRSNGEETIAGLRRIKFLVMDEADRLLSPTF 170
Score = 65 (27.9 bits), Expect = 2.5e-13, Sum P(3) = 2.5e-13
Identities = 26/110 (23%), Positives = 51/110 (46%)
Query: 270 MVLSATLTQDPNKLA---QLDLHHPLFLTTGET-RYKLPERLESYKLICESKLKPLYLVA 325
++ +AT+T +L Q + PL+L ET +P L+ + S+++ YLV
Sbjct: 190 LLFTATVTDAIRQLKYQPQKNNKPPLWLYEVETDNISVPSTLQQSYIFVSSQVREAYLVH 249
Query: 326 LLQ--SLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSV 373
LL ++ I+F + + + ++L ELR+ +QR+ +
Sbjct: 250 LLTIPENAKKSAIIFVNRTRTAELIYSILRLL-ELRVTELHSEMVQRERI 298
>UNIPROTKB|E2RPT4 [details] [associations]
symbol:DDX50 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012562
Pfam:PF00270 Pfam:PF00271 Pfam:PF08152 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00680000100003
EMBL:AAEX03002786 Ensembl:ENSCAFT00000038045 Uniprot:E2RPT4
Length = 687
Score = 148 (57.2 bits), Expect = 4.5e-13, Sum P(2) = 4.5e-13
Identities = 42/123 (34%), Positives = 66/123 (53%)
Query: 31 HLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPI 90
+ P + +K+ L+ G+S LFP+QV +T GP +DL + TG+GKT S+A+P+
Sbjct: 143 NFPISEETIKL-LKGRGVSYLFPIQV----KTFGPVYEGKDLIAQARTGTGKTFSFAIPL 197
Query: 91 VQTLSN-----RAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEI 145
++ L + R + LV+ PTR+LA QV F I LSV G +S +I
Sbjct: 198 IERLQRNQETIKKSRSPKVLVLAPTRELANQVAKDFKDITRK--LSVACFYGGTSYQSQI 255
Query: 146 SEL 148
+ +
Sbjct: 256 NHI 258
Score = 101 (40.6 bits), Expect = 4.5e-13, Sum P(2) = 4.5e-13
Identities = 22/76 (28%), Positives = 45/76 (59%)
Query: 157 GICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQA 216
G Y + + +++ +DILV TPGR+ DH+ + R L L ++V+DE D++L +
Sbjct: 248 GTSYQSQ--INHIRNGIDILVGTPGRIKDHLQSGR-LDLSKLRHVVLDEVDQMLDLGFAE 304
Query: 217 WLPTVLQLT-RSDNEN 231
+ ++ + ++D+E+
Sbjct: 305 QVEDIIHESYKTDSED 320
>WB|WBGene00021277 [details] [associations]
symbol:Y23H5B.6 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0040007 "growth" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0000003 "reproduction" evidence=IMP] [GO:0040035 "hermaphrodite
genitalia development" evidence=IMP] [GO:0040010 "positive
regulation of growth rate" evidence=IMP] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0009792 GO:GO:0040007 GO:GO:0040010 GO:GO:0002119
GO:GO:0003723 GO:GO:0040035 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K14776 InterPro:IPR025313 Pfam:PF13959
HOGENOM:HOG000268801 GeneTree:ENSGT00550000074980 OMA:ADKVIEP
HSSP:P10081 EMBL:FO080963 RefSeq:NP_490989.1
ProteinModelPortal:Q9N478 SMR:Q9N478 STRING:Q9N478 PaxDb:Q9N478
EnsemblMetazoa:Y23H5B.6 GeneID:171810 KEGG:cel:CELE_Y23H5B.6
UCSC:Y23H5B.6 CTD:171810 WormBase:Y23H5B.6 InParanoid:Q9N478
NextBio:872791 Uniprot:Q9N478
Length = 732
Score = 124 (48.7 bits), Expect = 4.6e-13, Sum P(3) = 4.6e-13
Identities = 34/91 (37%), Positives = 50/91 (54%)
Query: 58 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRC----LRALVVLPTRDL 113
+ ++TI L D+ + TGSGKTL+ +P+++ L RA L AL++ PTR+L
Sbjct: 102 IQRDTIAYSLTGSDVVGAAKTGSGKTLALVIPVLEALW-RAKWSPDYGLGALIISPTREL 160
Query: 114 ALQVKDVFAAIAPAVGLSVGLAVGQSSIADE 144
ALQ A+ G S GL +G S +A E
Sbjct: 161 ALQTFSTINAVGAHHGFSCGLVIGGSDVAFE 191
Score = 97 (39.2 bits), Expect = 4.6e-13, Sum P(3) = 4.6e-13
Identities = 25/85 (29%), Positives = 43/85 (50%)
Query: 157 GICYDPEDVLQELQ--SAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAY 214
G+ DV E S ++I+V TPGRL+ H++ + + L LV+DE DR+L +
Sbjct: 180 GLVIGGSDVAFERNRISGINIIVCTPGRLLQHMDENAQMSCDSLQVLVLDEADRMLDMGF 239
Query: 215 QAWLPTVLQLTRSDNENR-FSDAST 238
L +++ ++ + FS T
Sbjct: 240 SKQLNSIINNLPAERQTLLFSATQT 264
Score = 71 (30.1 bits), Expect = 4.6e-13, Sum P(3) = 4.6e-13
Identities = 24/91 (26%), Positives = 47/91 (51%)
Query: 270 MVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKL-PERLESYKLICESKLKPLYLVALLQ 328
++ SAT T++ L ++ + P+F++ E P+ L+ +I E + K L + ++
Sbjct: 257 LLFSATQTRNVKDLCRVCTNDPVFVSVHENASAATPDNLKQSYVIVEEEHKINALWSFIE 316
Query: 329 SLGEEKCIVFTSSVESTHRLCTLLNHFGELR 359
+ ++K +VF SS + R T F +LR
Sbjct: 317 AHRKKKSLVFVSSCKQA-RFLT--EAFSQLR 344
Score = 38 (18.4 bits), Expect = 0.00073, Sum P(2) = 0.00073
Identities = 10/29 (34%), Positives = 14/29 (48%)
Query: 143 DEISELIKRPKLEAGICYDPEDVLQELQS 171
DE+ EL + P D E QE++S
Sbjct: 623 DELEELEEGPSTITSYGLDIEKARQEIKS 651
>SGD|S000004903 [details] [associations]
symbol:HAS1 "ATP-dependent RNA helicase" species:4932
"Saccharomyces cerevisiae" [GO:0008186 "RNA-dependent ATPase
activity" evidence=IDA] [GO:0030687 "preribosome, large subunit
precursor" evidence=IDA] [GO:0003723 "RNA binding"
evidence=IEA;IDA] [GO:0005730 "nucleolus" evidence=IEA;IDA]
[GO:0005635 "nuclear envelope" evidence=IDA] [GO:0006364 "rRNA
processing" evidence=IEA;IMP] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0030686 "90S preribosome"
evidence=IDA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0042254 "ribosome
biogenesis" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 SGD:S000004903 GO:GO:0005524
GO:GO:0005635 GO:GO:0005730 GO:GO:0003723 EMBL:BK006946
GO:GO:0030687 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0030686 GO:GO:0006364 GO:GO:0004004 EMBL:X80836
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
InterPro:IPR025313 Pfam:PF13959 HOGENOM:HOG000268799 KO:K13179
OMA:KDGYRSY GeneTree:ENSGT00680000100037 OrthoDB:EOG4ZKNVS
PIR:S47451 RefSeq:NP_014017.1 ProteinModelPortal:Q03532 SMR:Q03532
DIP:DIP-4396N IntAct:Q03532 MINT:MINT-482816 STRING:Q03532
PaxDb:Q03532 PeptideAtlas:Q03532 EnsemblFungi:YMR290C GeneID:855335
KEGG:sce:YMR290C CYGD:YMR290c NextBio:979064 Genevestigator:Q03532
GermOnline:YMR290C Uniprot:Q03532
Length = 505
Score = 137 (53.3 bits), Expect = 4.7e-13, Sum P(2) = 4.7e-13
Identities = 48/173 (27%), Positives = 81/173 (46%)
Query: 2 EEAKKKSMPVLPWMRSPVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQE 61
E++ K P V FE+ L P LK A++ MG +++ VQ
Sbjct: 22 EKSTSKQNNAAPEGEQTTCVEKFEELKLSQ-----PTLK-AIEKMGFTTMTSVQA----R 71
Query: 62 TIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRA---LVVLPTRDLALQVK 118
TI P L RD+ + TGSGKTL++ +P ++ L + + +V+ PTR+LALQ+
Sbjct: 72 TIPPLLAGRDVLGAAKTGSGKTLAFLIPAIELLHSLKFKPRNGTGIIVITPTRELALQIF 131
Query: 119 DVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQS 171
V + + G+ +G ++ E +L+K + + P +L LQ+
Sbjct: 132 GVARELMEFHSQTFGIVIGGANRRQEAEKLMKGVNM---LIATPGRLLDHLQN 181
Score = 134 (52.2 bits), Expect = 1.0e-12, Sum P(2) = 1.0e-12
Identities = 25/68 (36%), Positives = 46/68 (67%)
Query: 167 QELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTR 226
++L V++L+ATPGRL+DH+ T+GF ++L L++DE DR+L ++ + ++++
Sbjct: 159 EKLMKGVNMLIATPGRLLDHLQNTKGFVFKNLKALIIDEADRILEIGFEDEMRQIIKIL- 217
Query: 227 SDNENRFS 234
NE+R S
Sbjct: 218 -PNEDRQS 224
Score = 109 (43.4 bits), Expect = 4.7e-13, Sum P(2) = 4.7e-13
Identities = 35/107 (32%), Positives = 53/107 (49%)
Query: 270 MVLSATLTQDPNKLAQLDLHH-PLFLTT-GETRYKLPERLESYKLICESKLKPLYLVALL 327
M+ SAT T LA++ L PLF+ ET + LE ++C+S + L L + L
Sbjct: 225 MLFSATQTTKVEDLARISLRPGPLFINVVPETDNSTADGLEQGYVVCDSDKRFLLLFSFL 284
Query: 328 QSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVR 374
+ ++K IVF SS S LLN+ + + + E G Q+Q R
Sbjct: 285 KRNQKKKIIVFLSSCNSVKYYAELLNY---IDLPVLELHGKQKQQKR 328
>TAIR|locus:2130918 [details] [associations]
symbol:AT4G16630 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:CP002687 GenomeReviews:CT486007_GR
GO:GO:0003723 EMBL:Z97341 EMBL:AL161544 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000265456 KO:K13181
OMA:RIRKRDH EMBL:AJ010475 EMBL:AK228353 IPI:IPI00542014 PIR:D71433
PIR:T51310 RefSeq:NP_193396.3 UniGene:At.49
ProteinModelPortal:Q9ZRZ8 SMR:Q9ZRZ8 IntAct:Q9ZRZ8 STRING:Q9ZRZ8
PaxDb:Q9ZRZ8 PRIDE:Q9ZRZ8 EnsemblPlants:AT4G16630.1 GeneID:827364
KEGG:ath:AT4G16630 GeneFarm:955 TAIR:At4g16630 InParanoid:Q9ZRZ8
PhylomeDB:Q9ZRZ8 ProtClustDB:CLSN2690957 Genevestigator:Q9ZRZ8
GermOnline:AT4G16630 Uniprot:Q9ZRZ8
Length = 789
Score = 158 (60.7 bits), Expect = 5.2e-13, Sum P(2) = 5.2e-13
Identities = 53/176 (30%), Positives = 87/176 (49%)
Query: 3 EAKKKSMPVLPWMRSPVD-VSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQE 61
E K + P+ S VD VS D ++ L P L+ A + +G P+Q A
Sbjct: 144 EYKPEDATPKPFF-STVDGVSFHADTFME-LNLSRPLLR-ACETLGYKKPTPIQAAC--- 197
Query: 62 TIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCL--RALVVLPTRDLALQVKD 119
I L RDLC ++ TGSGKT ++ALP ++ L R R R L++ PTR+LA+Q+
Sbjct: 198 -IPLALTGRDLCASAITGSGKTAAFALPTLERLLFRPKRVFATRVLILTPTRELAVQIHS 256
Query: 120 VFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDI 175
+ +A + GL VG S+ ++ L P + + P ++ L++++ +
Sbjct: 257 MIQNLAQFTDIKCGLIVGGLSVREQEVVLRSMPDI---VVATPGRMIDHLRNSMSV 309
Score = 135 (52.6 bits), Expect = 2.0e-10, Sum P(3) = 2.0e-10
Identities = 39/124 (31%), Positives = 67/124 (54%)
Query: 104 ALVVLPTRD-LALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISEL--IKRPKLEAGICY 160
A LPT + L + K VFA + + LAV S+ +++ IK + G+
Sbjct: 219 AAFALPTLERLLFRPKRVFATRVLILTPTRELAVQIHSMIQNLAQFTDIKCGLIVGGLSV 278
Query: 161 DPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPT 220
++V+ L+S DI+VATPGR++DH+ + L+ L L++DE DRLL+ + +
Sbjct: 279 REQEVV--LRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLQTGFATEITE 336
Query: 221 VLQL 224
+++L
Sbjct: 337 LVRL 340
Score = 91 (37.1 bits), Expect = 5.2e-13, Sum P(2) = 5.2e-13
Identities = 30/107 (28%), Positives = 53/107 (49%)
Query: 270 MVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKL--KPLYLVALL 327
M+ SAT+T++ +L +L L+ PL L+ + + P E I ++ + L++L
Sbjct: 348 MLFSATMTEEVKELVKLSLNKPLRLSADPSARRPPGLTEEVVRIRRTREANQEAVLLSLC 407
Query: 328 QSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVR 374
+ K I+F+ + ++ HRL L FG +K E G Q+ R
Sbjct: 408 TRTFKSKVIIFSGTKQAAHRLKIL---FGLAGLKAAELHGNLTQAQR 451
Score = 40 (19.1 bits), Expect = 2.0e-10, Sum P(3) = 2.0e-10
Identities = 10/44 (22%), Positives = 21/44 (47%)
Query: 2 EEAKKKSMPVLPWMRSPVDVSLFEDCPLDHLPCLDPRLKVALQN 45
E+ K+ + PW + S+ E+ H +D ++ A+Q+
Sbjct: 61 EKRKRDADAQSPWDFASYSSSVGEEHARRHTTSIDEKISKAIQH 104
>UNIPROTKB|E2QTT0 [details] [associations]
symbol:DDX50 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005886 "plasma membrane" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012562
Pfam:PF00270 Pfam:PF00271 Pfam:PF08152 PROSITE:PS51194
SMART:SM00490 GO:GO:0005886 GO:GO:0005524 GO:GO:0005730
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00680000100003 OMA:GDTEEGC EMBL:AAEX03002786
Ensembl:ENSCAFT00000021867 NextBio:20898308 Uniprot:E2QTT0
Length = 738
Score = 148 (57.2 bits), Expect = 5.4e-13, Sum P(2) = 5.4e-13
Identities = 42/123 (34%), Positives = 66/123 (53%)
Query: 31 HLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPI 90
+ P + +K+ L+ G+S LFP+QV +T GP +DL + TG+GKT S+A+P+
Sbjct: 142 NFPISEETIKL-LKGRGVSYLFPIQV----KTFGPVYEGKDLIAQARTGTGKTFSFAIPL 196
Query: 91 VQTLSN-----RAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEI 145
++ L + R + LV+ PTR+LA QV F I LSV G +S +I
Sbjct: 197 IERLQRNQETIKKSRSPKVLVLAPTRELANQVAKDFKDITRK--LSVACFYGGTSYQSQI 254
Query: 146 SEL 148
+ +
Sbjct: 255 NHI 257
Score = 101 (40.6 bits), Expect = 5.4e-13, Sum P(2) = 5.4e-13
Identities = 22/76 (28%), Positives = 45/76 (59%)
Query: 157 GICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQA 216
G Y + + +++ +DILV TPGR+ DH+ + R L L ++V+DE D++L +
Sbjct: 247 GTSYQSQ--INHIRNGIDILVGTPGRIKDHLQSGR-LDLSKLRHVVLDEVDQMLDLGFAE 303
Query: 217 WLPTVLQLT-RSDNEN 231
+ ++ + ++D+E+
Sbjct: 304 QVEDIIHESYKTDSED 319
>FB|FBgn0027602 [details] [associations]
symbol:CG8611 species:7227 "Drosophila melanogaster"
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:AE014298
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
InterPro:IPR025313 Pfam:PF13959 KO:K14806
GeneTree:ENSGT00550000075041 EMBL:AF145609 RefSeq:NP_573214.1
RefSeq:NP_788922.1 UniGene:Dm.3172 ProteinModelPortal:Q86B47
SMR:Q86B47 IntAct:Q86B47 MINT:MINT-776497 PaxDb:Q86B47 PRIDE:Q86B47
EnsemblMetazoa:FBtr0074440 GeneID:32725 KEGG:dme:Dmel_CG8611
UCSC:CG8611-RB FlyBase:FBgn0027602 InParanoid:Q86B47 OMA:YTERDPE
OrthoDB:EOG47SQVT PhylomeDB:Q86B47 GenomeRNAi:32725 NextBio:780053
Bgee:Q86B47 Uniprot:Q86B47
Length = 975
Score = 167 (63.8 bits), Expect = 6.0e-13, Sum P(2) = 6.0e-13
Identities = 65/189 (34%), Positives = 92/189 (48%)
Query: 57 AVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQ 116
+V Q+TI L +D+ + S TGSGKTL+YALP+V+ L + R R VL AL
Sbjct: 353 SVQQKTIPEVLQGKDVLVRSQTGSGKTLAYALPLVELLQKQQPRIQRKDGVL-----AL- 406
Query: 117 VKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPK-LEAGICYDPEDVLQE---LQSA 172
I P L V Q+ + I +L+K + G E E L+
Sbjct: 407 ------VIVPTREL-----VMQTY--ELIQKLVKPYTWIVPGSLLGGESRKSEKARLRKG 453
Query: 173 VDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENR 232
++IL+ TPGRL+DH+ T F L L +L++DE DRLL Y+ V QL + ++ R
Sbjct: 454 INILIGTPGRLVDHLLHTASFKLTKLQFLILDEADRLLELGYER---DVKQLVEAIDKQR 510
Query: 233 FSDASTFLP 241
LP
Sbjct: 511 AECEDKELP 519
Score = 83 (34.3 bits), Expect = 6.0e-13, Sum P(2) = 6.0e-13
Identities = 17/39 (43%), Positives = 26/39 (66%)
Query: 260 KDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGE 298
+DK P+L +M+LSATLT +LA L L +PL++ +
Sbjct: 514 EDKELPQLQRMLLSATLTSQVQQLAGLTLKNPLYIDNSD 552
Score = 43 (20.2 bits), Expect = 8.1e-09, Sum P(2) = 8.1e-09
Identities = 9/17 (52%), Positives = 11/17 (64%)
Query: 245 GSLKTIRRCGVERGFKD 261
GS+ R GV RGF+D
Sbjct: 686 GSMTQTERQGVFRGFRD 702
>WB|WBGene00022378 [details] [associations]
symbol:Y94H6A.5 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0016818 "hydrolase activity, acting on
acid anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
[GO:0016021 "integral to membrane" evidence=IEA] [GO:0040010
"positive regulation of growth rate" evidence=IMP]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012541 Pfam:PF00270 Pfam:PF00271 Pfam:PF08147
ProDom:PD024971 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 GO:GO:0040010 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 KO:K14808 HOGENOM:HOG000246455
OMA:FYIPYRP GeneTree:ENSGT00550000075100 EMBL:FO081810
GeneID:177054 KEGG:cel:CELE_Y94H6A.5 UCSC:Y94H6A.5a CTD:177054
NextBio:895136 RefSeq:NP_741347.2 ProteinModelPortal:Q688Z4
SMR:Q688Z4 STRING:Q688Z4 PRIDE:Q688Z4 EnsemblMetazoa:Y94H6A.5b
WormBase:Y94H6A.5b InParanoid:Q688Z4 ArrayExpress:Q688Z4
Uniprot:Q688Z4
Length = 871
Score = 154 (59.3 bits), Expect = 7.5e-13, Sum P(2) = 7.5e-13
Identities = 40/121 (33%), Positives = 65/121 (53%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFE-RDLCINSPTGSGKTLSYALPIVQT 93
LD + A++ G + P+Q ++TI P + + +D+ S TGSGKT ++ +P++Q
Sbjct: 31 LDHSVYKAIEKKGFNQPTPIQ----RKTI-PCIMDGKDVVAMSRTGSGKTAAFVIPMLQK 85
Query: 94 LSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPK 153
L R +RAL+V PTR+LALQ V + GL VG I ++ S + + P
Sbjct: 86 LKRRDTTGIRALMVSPTRELALQTFKVVKELGRFTGLRCACLVGGDQIEEQFSTIHENPD 145
Query: 154 L 154
+
Sbjct: 146 I 146
Score = 95 (38.5 bits), Expect = 7.5e-13, Sum P(2) = 7.5e-13
Identities = 22/61 (36%), Positives = 32/61 (52%)
Query: 163 EDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVL 222
E+ + DIL+ATPGRL+ H+ L ++ Y+V DE DRL +Q L L
Sbjct: 134 EEQFSTIHENPDILLATPGRLL-HVIVEMDLRLSYVQYVVFDEADRLFEMGFQDQLTETL 192
Query: 223 Q 223
+
Sbjct: 193 K 193
>UNIPROTKB|Q9KNA4 [details] [associations]
symbol:VC_A0061 "ATP-dependent RNA helicase, DEAD box
family" species:243277 "Vibrio cholerae O1 biovar El Tor str.
N16961" [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=ISS] [GO:0016070 "RNA metabolic process" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:AE003853
GenomeReviews:AE003853_GR GO:GO:0016070 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0004004 InterPro:IPR014014
PROSITE:PS51195 HSSP:P10081 OMA:PKFIVAT ProtClustDB:CLSK869483
PIR:C82506 RefSeq:NP_232462.1 ProteinModelPortal:Q9KNA4
DNASU:2612119 GeneID:2612119 KEGG:vch:VCA0061 PATRIC:20084709
Uniprot:Q9KNA4
Length = 452
Score = 133 (51.9 bits), Expect = 7.9e-13, Sum P(3) = 7.9e-13
Identities = 38/122 (31%), Positives = 65/122 (53%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIV-QT 93
LD RL L+N+ + F + Q+ I + RDL +S TGSGKTL++ LP++ ++
Sbjct: 12 LDNRL---LKNLAHYN-FKQATEIQQQAIPLTIAGRDLLASSKTGSGKTLAFVLPMLHKS 67
Query: 94 LSNRAVRCL--RALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKR 151
L +A R L+++PTR+LA QV ++ + + L G + D++ L +
Sbjct: 68 LKTKAFSAKDPRGLILVPTRELAKQVYGELRSMLGGLSYTATLITGGENFNDQVKALARG 127
Query: 152 PK 153
P+
Sbjct: 128 PR 129
Score = 90 (36.7 bits), Expect = 7.9e-13, Sum P(3) = 7.9e-13
Identities = 22/47 (46%), Positives = 29/47 (61%)
Query: 164 DVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLL 210
D ++ L +VATPGRL DH++ R LE L LV+DE DR+L
Sbjct: 119 DQVKALARGPRFIVATPGRLADHLDH-RSLFLEGLETLVLDEADRML 164
Score = 57 (25.1 bits), Expect = 7.9e-13, Sum P(3) = 7.9e-13
Identities = 33/131 (25%), Positives = 53/131 (40%)
Query: 245 GSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQ-DPNKLAQLDLHHPLFLTTGETRYKL 303
G K +RR + K + R ++ SATL D N +A L+ P + G +
Sbjct: 167 GFAKELRR--IHNAAKHR---RRQTLMFSATLDHADVNDMAMELLNEPKRIAIGVGSEEH 221
Query: 304 PERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIK 363
+ + + L K L +L + I+FT++ T RL LN + +K
Sbjct: 222 KDITQHFYLCDHLDHKEALLDRILADAEYRQVIIFTATRADTDRLTEKLN---QNNLKAV 278
Query: 364 EYSGLQRQSVR 374
SG Q+ R
Sbjct: 279 ALSGNLNQTQR 289
>TIGR_CMR|VC_A0061 [details] [associations]
symbol:VC_A0061 "ATP-dependent RNA helicase, DEAD box
family" species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE003853 GenomeReviews:AE003853_GR GO:GO:0016070
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 OMA:PKFIVAT
ProtClustDB:CLSK869483 PIR:C82506 RefSeq:NP_232462.1
ProteinModelPortal:Q9KNA4 DNASU:2612119 GeneID:2612119
KEGG:vch:VCA0061 PATRIC:20084709 Uniprot:Q9KNA4
Length = 452
Score = 133 (51.9 bits), Expect = 7.9e-13, Sum P(3) = 7.9e-13
Identities = 38/122 (31%), Positives = 65/122 (53%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIV-QT 93
LD RL L+N+ + F + Q+ I + RDL +S TGSGKTL++ LP++ ++
Sbjct: 12 LDNRL---LKNLAHYN-FKQATEIQQQAIPLTIAGRDLLASSKTGSGKTLAFVLPMLHKS 67
Query: 94 LSNRAVRCL--RALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKR 151
L +A R L+++PTR+LA QV ++ + + L G + D++ L +
Sbjct: 68 LKTKAFSAKDPRGLILVPTRELAKQVYGELRSMLGGLSYTATLITGGENFNDQVKALARG 127
Query: 152 PK 153
P+
Sbjct: 128 PR 129
Score = 90 (36.7 bits), Expect = 7.9e-13, Sum P(3) = 7.9e-13
Identities = 22/47 (46%), Positives = 29/47 (61%)
Query: 164 DVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLL 210
D ++ L +VATPGRL DH++ R LE L LV+DE DR+L
Sbjct: 119 DQVKALARGPRFIVATPGRLADHLDH-RSLFLEGLETLVLDEADRML 164
Score = 57 (25.1 bits), Expect = 7.9e-13, Sum P(3) = 7.9e-13
Identities = 33/131 (25%), Positives = 53/131 (40%)
Query: 245 GSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQ-DPNKLAQLDLHHPLFLTTGETRYKL 303
G K +RR + K + R ++ SATL D N +A L+ P + G +
Sbjct: 167 GFAKELRR--IHNAAKHR---RRQTLMFSATLDHADVNDMAMELLNEPKRIAIGVGSEEH 221
Query: 304 PERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIK 363
+ + + L K L +L + I+FT++ T RL LN + +K
Sbjct: 222 KDITQHFYLCDHLDHKEALLDRILADAEYRQVIIFTATRADTDRLTEKLN---QNNLKAV 278
Query: 364 EYSGLQRQSVR 374
SG Q+ R
Sbjct: 279 ALSGNLNQTQR 289
>UNIPROTKB|F1MMK3 [details] [associations]
symbol:DDX50 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005886 "plasma membrane" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012562 Pfam:PF00270 Pfam:PF00271
Pfam:PF08152 PROSITE:PS51194 SMART:SM00490 GO:GO:0005886
GO:GO:0005524 GO:GO:0005730 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00680000100003 CTD:79009 KO:K13183
OMA:GDTEEGC EMBL:DAAA02061828 IPI:IPI00689334 RefSeq:NP_001192982.1
UniGene:Bt.55841 PRIDE:F1MMK3 Ensembl:ENSBTAT00000022002
GeneID:534331 KEGG:bta:534331 NextBio:20876363 ArrayExpress:F1MMK3
Uniprot:F1MMK3
Length = 737
Score = 144 (55.7 bits), Expect = 9.4e-13, Sum P(2) = 9.4e-13
Identities = 40/123 (32%), Positives = 66/123 (53%)
Query: 31 HLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPI 90
+ P + +K+ L+ G++ LFP+QV +T GP +DL + TG+GKT S+A+P+
Sbjct: 141 NFPISEETIKL-LKGRGVTYLFPIQV----KTFGPVYEGKDLIAQARTGTGKTFSFAIPL 195
Query: 91 VQTLSN-----RAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEI 145
++ L + R + LV+ PTR+LA QV F + LSV G +S +I
Sbjct: 196 IERLQRNQETIKKSRSPKVLVLAPTRELANQVAKDFKDVTRK--LSVACFYGGTSYQSQI 253
Query: 146 SEL 148
+ +
Sbjct: 254 NHI 256
Score = 103 (41.3 bits), Expect = 9.4e-13, Sum P(2) = 9.4e-13
Identities = 23/76 (30%), Positives = 45/76 (59%)
Query: 157 GICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQA 216
G Y + + +++ +DILV TPGR+ DH+ + R L L ++V+DE D++L +
Sbjct: 246 GTSYQSQ--INHIRNGIDILVGTPGRIKDHLQSGR-LDLSKLRHVVLDEVDQMLDLGFAE 302
Query: 217 WLPTVLQLT-RSDNEN 231
+ +L + ++D+E+
Sbjct: 303 QVEDILHESYKTDSED 318
>UNIPROTKB|E2RFA3 [details] [associations]
symbol:DDX18 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313
Pfam:PF13959 KO:K13179 OMA:KDGYRSY GeneTree:ENSGT00680000100037
CTD:8886 EMBL:AAEX03011884 RefSeq:XP_533327.3
Ensembl:ENSCAFT00000007958 GeneID:476120 KEGG:cfa:476120
Uniprot:E2RFA3
Length = 669
Score = 132 (51.5 bits), Expect = 1.2e-12, Sum P(2) = 1.2e-12
Identities = 28/73 (38%), Positives = 46/73 (63%)
Query: 167 QELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTR 226
Q+L + ++I+VATPGRL+DH+ T GF ++L LV+DE DR+L ++ L +++L
Sbjct: 295 QKLGNGINIIVATPGRLLDHMQNTPGFMYKNLQCLVIDEADRILDVGFEEELKQIIKLLP 354
Query: 227 SDNENR-FSDAST 238
+ + FS T
Sbjct: 355 TRRQTMLFSATQT 367
Score = 114 (45.2 bits), Expect = 1.2e-12, Sum P(2) = 1.2e-12
Identities = 44/152 (28%), Positives = 73/152 (48%)
Query: 2 EEAKKKSMPVLPWMRSPVDVSLFEDCPLDHLPCL--DPRLKVALQNMGISSLFPVQVAVW 59
+E + +P LP + FED L L + LK A++ MG +++ +Q
Sbjct: 155 DEEEDSEVPSLPLGLT----GAFEDTSFASLSSLVNENTLK-AIKEMGFTNMTEIQ---- 205
Query: 60 QETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRA---LVVLPTRDLALQ 116
++I P L RDL + TGSGKTL++ +P V+ + L++ PTR+LA+Q
Sbjct: 206 HKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVELIVKLKFMPRNGTGVLILSPTRELAMQ 265
Query: 117 VKDVFAAIAPAVGLSVGLAVGQSSIADEISEL 148
V + + GL +G S+ + E +L
Sbjct: 266 TFGVLKELMMYHVHTYGLIMGGSNRSAEAQKL 297
Score = 90 (36.7 bits), Expect = 3.5e-08, Sum P(2) = 3.5e-08
Identities = 36/126 (28%), Positives = 60/126 (47%)
Query: 254 GVERGFKD--KPYP-RLVKMVLSATLTQDPNKLAQLDLH-HPLFLTTGETRYKLP-ERLE 308
G E K K P R M+ SAT T+ LA++ L PL++ + + + LE
Sbjct: 341 GFEEELKQIIKLLPTRRQTMLFSATQTRKVEDLARISLKKEPLYVGVDDDKANATVDGLE 400
Query: 309 SYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGL 368
++C S+ + L L L+ ++K +VF SS +S LLN+ + + + G
Sbjct: 401 QGYVVCPSEKRFLLLFTFLKKNRKKKLMVFFSSCKSVKYHYELLNY---IDLPVLAIHGR 457
Query: 369 QRQSVR 374
Q+Q+ R
Sbjct: 458 QKQNKR 463
>UNIPROTKB|Q9BQ39 [details] [associations]
symbol:DDX50 "ATP-dependent RNA helicase DDX50"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005886 "plasma membrane" evidence=IDA]
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012562
Pfam:PF00270 Pfam:PF00271 Pfam:PF08152 PROSITE:PS51194
SMART:SM00490 GO:GO:0005886 GO:GO:0005524 GO:GO:0005730
EMBL:CH471083 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 EMBL:AL359844 HOGENOM:HOG000268805
HOVERGEN:HBG051331 OrthoDB:EOG46143T EMBL:AF334103 EMBL:BC000210
EMBL:BC000272 EMBL:BC018637 IPI:IPI00031554 RefSeq:NP_076950.1
UniGene:Hs.522984 PDB:2E29 PDBsum:2E29 ProteinModelPortal:Q9BQ39
SMR:Q9BQ39 IntAct:Q9BQ39 STRING:Q9BQ39 PhosphoSite:Q9BQ39
DMDM:55976580 SWISS-2DPAGE:Q9BQ39 PaxDb:Q9BQ39 PeptideAtlas:Q9BQ39
PRIDE:Q9BQ39 DNASU:79009 Ensembl:ENST00000373585 GeneID:79009
KEGG:hsa:79009 UCSC:uc001jou.3 CTD:79009 GeneCards:GC10P070661
HGNC:HGNC:17906 HPA:HPA037388 MIM:610373 neXtProt:NX_Q9BQ39
PharmGKB:PA134948525 InParanoid:Q9BQ39 KO:K13183 OMA:GDTEEGC
PhylomeDB:Q9BQ39 ChiTaRS:DDX50 EvolutionaryTrace:Q9BQ39
GenomeRNAi:79009 NextBio:67657 ArrayExpress:Q9BQ39 Bgee:Q9BQ39
CleanEx:HS_DDX50 Genevestigator:Q9BQ39 Uniprot:Q9BQ39
Length = 737
Score = 145 (56.1 bits), Expect = 1.2e-12, Sum P(2) = 1.2e-12
Identities = 41/123 (33%), Positives = 66/123 (53%)
Query: 31 HLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPI 90
+ P + +K+ L+ G++ LFP+QV +T GP +DL + TG+GKT S+A+P+
Sbjct: 141 NFPISEETIKL-LKGRGVTYLFPIQV----KTFGPVYEGKDLIAQARTGTGKTFSFAIPL 195
Query: 91 VQTLSN-----RAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEI 145
++ L + R + LV+ PTR+LA QV F I LSV G +S +I
Sbjct: 196 IERLQRNQETIKKSRSPKVLVLAPTRELANQVAKDFKDITRK--LSVACFYGGTSYQSQI 253
Query: 146 SEL 148
+ +
Sbjct: 254 NHI 256
Score = 101 (40.6 bits), Expect = 1.2e-12, Sum P(2) = 1.2e-12
Identities = 22/76 (28%), Positives = 45/76 (59%)
Query: 157 GICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQA 216
G Y + + +++ +DILV TPGR+ DH+ + R L L ++V+DE D++L +
Sbjct: 246 GTSYQSQ--INHIRNGIDILVGTPGRIKDHLQSGR-LDLSKLRHVVLDEVDQMLDLGFAE 302
Query: 217 WLPTVLQLT-RSDNEN 231
+ ++ + ++D+E+
Sbjct: 303 QVEDIIHESYKTDSED 318
>MGI|MGI:2182303 [details] [associations]
symbol:Ddx50 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 50"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0016787 "hydrolase activity" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012562
Pfam:PF00270 Pfam:PF00271 Pfam:PF08152 PROSITE:PS51194
SMART:SM00490 MGI:MGI:2182303 GO:GO:0005886 GO:GO:0005524
GO:GO:0005730 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00680000100003 HOGENOM:HOG000268805
HOVERGEN:HBG051331 OrthoDB:EOG46143T CTD:79009 KO:K13183
OMA:GDTEEGC EMBL:AF334104 IPI:IPI00117771 RefSeq:NP_444413.1
UniGene:Mm.114116 ProteinModelPortal:Q99MJ9 SMR:Q99MJ9
PhosphoSite:Q99MJ9 PaxDb:Q99MJ9 PRIDE:Q99MJ9
Ensembl:ENSMUST00000020270 GeneID:94213 KEGG:mmu:94213
UCSC:uc007fhp.1 InParanoid:Q99MJ9 NextBio:352175 Bgee:Q99MJ9
CleanEx:MM_DDX50 Genevestigator:Q99MJ9
GermOnline:ENSMUSG00000020076 Uniprot:Q99MJ9
Length = 734
Score = 143 (55.4 bits), Expect = 1.2e-12, Sum P(2) = 1.2e-12
Identities = 39/111 (35%), Positives = 61/111 (54%)
Query: 43 LQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSN-----R 97
L+ G++ LFP+QV +T GP +DL + TG+GKT S+A+P+++ L +
Sbjct: 149 LKGRGVTYLFPIQV----KTFGPVYEGKDLIAQARTGTGKTFSFAIPLIERLQRNQETIK 204
Query: 98 AVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISEL 148
R + LV+ PTR+LA QV F I LSV G +S +I+++
Sbjct: 205 KSRSPKVLVLAPTRELANQVAKDFKDITRK--LSVACFYGGTSYQSQINQI 253
Score = 103 (41.3 bits), Expect = 1.2e-12, Sum P(2) = 1.2e-12
Identities = 22/76 (28%), Positives = 46/76 (60%)
Query: 157 GICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQA 216
G Y + + ++++ +DILV TPGR+ DH+ + R L L ++V+DE D++L +
Sbjct: 243 GTSYQSQ--INQIRNGIDILVGTPGRIKDHLQSGR-LDLSKLRHVVLDEVDQMLDLGFAE 299
Query: 217 WLPTVLQLT-RSDNEN 231
+ ++ + ++D+E+
Sbjct: 300 QVEDIIHESYKTDSED 315
>TIGR_CMR|GSU_0914 [details] [associations]
symbol:GSU_0914 "ATP-dependent RNA helicase RhlE"
species:243231 "Geobacter sulfurreducens PCA" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008152
"metabolic process" evidence=ISS] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:AE017180
GenomeReviews:AE017180_GR InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 KO:K11927 OMA:KHRAKRV RefSeq:NP_951968.1
ProteinModelPortal:Q74EP8 GeneID:2687174 KEGG:gsu:GSU0914
PATRIC:22024603 ProtClustDB:CLSK924451
BioCyc:GSUL243231:GH27-925-MONOMER Uniprot:Q74EP8
Length = 447
Score = 117 (46.2 bits), Expect = 1.3e-12, Sum P(3) = 1.3e-12
Identities = 32/112 (28%), Positives = 53/112 (47%)
Query: 37 PRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSN 96
P + + G + P+Q + I + RD+ + TG+GKT ++ALPI+ L
Sbjct: 10 PAVATGIAAAGYETPTPIQA----QAIPAVMAGRDVMGLAQTGTGKTAAFALPILHRLQQ 65
Query: 97 RAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISEL 148
+RALV+ PTR+LA Q+ D F + L G + ++ +L
Sbjct: 66 GERGRVRALVIAPTRELAEQINDSFVTLGRQTRLRSVTVYGGVGVNPQVQKL 117
Score = 93 (37.8 bits), Expect = 1.3e-12, Sum P(3) = 1.3e-12
Identities = 21/53 (39%), Positives = 35/53 (66%)
Query: 157 GICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRL 209
G+ +P+ +Q+L++ +++VA PGRL+DHI A L L LV+DE D++
Sbjct: 107 GVGVNPQ--VQKLKAGAEVVVACPGRLLDHI-AQGTIDLSRLEVLVLDEADQM 156
Score = 70 (29.7 bits), Expect = 1.3e-12, Sum P(3) = 1.3e-12
Identities = 29/102 (28%), Positives = 42/102 (41%)
Query: 255 VERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLIC 314
+ R K P PR ++ SAT+ D LAQ L P+ + G + Y +
Sbjct: 165 IRRVLKHLP-PRRQTLLFSATMPIDIRTLAQDILVDPVTVQVGTVAPAVTVAHALYPV-- 221
Query: 315 ESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFG 356
E LK L+ LL+ E ++FT + RL L G
Sbjct: 222 EQHLKTPLLLELLRHTDTESVLIFTRTKHRAKRLGEQLEKAG 263
>UNIPROTKB|F6XWM4 [details] [associations]
symbol:DDX55 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313
Pfam:PF13959 GeneTree:ENSGT00550000074969
Ensembl:ENSCAFT00000035837 EMBL:AAEX03014637 OMA:DADNVFA
Uniprot:F6XWM4
Length = 734
Score = 153 (58.9 bits), Expect = 1.6e-12, Sum P(2) = 1.6e-12
Identities = 57/172 (33%), Positives = 86/172 (50%)
Query: 78 TGSGKTLSYALPIVQTLSNRAVRCLR----ALVVLPTRDLALQVKDVFAAIAPAVG-LSV 132
TGSGKTL++ +PI++ L R + + A+++ PTR+LA+QV +V A + S
Sbjct: 190 TGSGKTLAFVIPILEILLRREEKLKKNQVGAIIITPTRELAIQVDEVLAHFTKSFPQFSQ 249
Query: 133 GLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINA-TR 191
L +G + AD++S R K + G +I+VATPGRL D
Sbjct: 250 ILWIGGRNPADDVS----RFKEQGG----------------NIIVATPGRLEDMFRRKVE 289
Query: 192 GFTL----EHLCYLVVDETDRLLREAYQAWLPTVLQ-LTRSDNENRFSDAST 238
G L + L LV+DE DRLL ++A + T+L+ L + FS T
Sbjct: 290 GLDLASCVKSLEVLVLDEADRLLDMGFEASINTILEFLPKQRRTGLFSATQT 341
Score = 91 (37.1 bits), Expect = 1.6e-12, Sum P(2) = 1.6e-12
Identities = 24/77 (31%), Positives = 43/77 (55%)
Query: 271 VLSATLTQDPNKLAQLDLHHPLFLTTGE------TRYKLPERLESYKLICESKLKPLYLV 324
+ SAT TQ+ L + L +P+ ++ E + K P RLE+Y ++C++ K LV
Sbjct: 335 LFSATQTQEVESLVRAGLRNPVRISVKEKGVAASSTQKTPSRLENYYMVCKADEKFNQLV 394
Query: 325 ALLQSLGEEKCIVFTSS 341
L++ +EK ++F S+
Sbjct: 395 HFLRNHKQEKHLIFFST 411
>UNIPROTKB|I3L840 [details] [associations]
symbol:DDX18 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
GeneTree:ENSGT00680000100037 EMBL:CU406995
Ensembl:ENSSSCT00000025310 Uniprot:I3L840
Length = 667
Score = 132 (51.5 bits), Expect = 1.9e-12, Sum P(2) = 1.9e-12
Identities = 28/73 (38%), Positives = 46/73 (63%)
Query: 167 QELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTR 226
Q+L + ++I+VATPGRL+DH+ T GF ++L LV+DE DR+L ++ L +++L
Sbjct: 293 QKLANGINIVVATPGRLLDHMQNTPGFMYKNLQCLVIDEADRILDVGFEEELKQIIKLLP 352
Query: 227 SDNENR-FSDAST 238
+ + FS T
Sbjct: 353 TRRQTMLFSATQT 365
Score = 112 (44.5 bits), Expect = 1.9e-12, Sum P(2) = 1.9e-12
Identities = 45/154 (29%), Positives = 78/154 (50%)
Query: 1 MEEAKKKSMPVLPWMRSPVDVS-LFEDCPLDHLPCL--DPRLKVALQNMGISSLFPVQVA 57
ME+ K +P + P+ ++ FED L L + L+ A++ MG +++ +Q
Sbjct: 149 MEKPDKDDDTEVPSL--PLGLTGAFEDTSFASLTDLVNENTLR-AIKEMGFTNMTEIQ-- 203
Query: 58 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSN-RAV--RCLRALVVLPTRDLA 114
++I P L RDL + TGSGKTL++ +P V+ + R + L++ PTR+LA
Sbjct: 204 --HKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVELIVKLRFMPRNGTGVLILSPTRELA 261
Query: 115 LQVKDVFAAIAPAVGLSVGLAVGQSSIADEISEL 148
+Q V + + GL +G S+ + E +L
Sbjct: 262 MQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQKL 295
Score = 90 (36.7 bits), Expect = 5.8e-08, Sum P(2) = 5.8e-08
Identities = 36/126 (28%), Positives = 60/126 (47%)
Query: 254 GVERGFKD--KPYP-RLVKMVLSATLTQDPNKLAQLDLH-HPLFLTTGETRYKLP-ERLE 308
G E K K P R M+ SAT T+ LA++ L PL++ + + + LE
Sbjct: 339 GFEEELKQIIKLLPTRRQTMLFSATQTRKVEDLARISLKKEPLYVGVDDDKANATVDGLE 398
Query: 309 SYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGL 368
++C S+ + L L L+ ++K +VF SS +S LLN+ + + + G
Sbjct: 399 QGYVVCPSEKRFLLLFTFLKKNRKKKLMVFFSSCKSVKYHYELLNY---IDLPVLAIHGR 455
Query: 369 QRQSVR 374
Q+Q+ R
Sbjct: 456 QKQNKR 461
Score = 49 (22.3 bits), Expect = 5.8e-06, Sum P(2) = 5.8e-06
Identities = 12/43 (27%), Positives = 22/43 (51%)
Query: 130 LSVGLAVGQSS-IADEISELIKRPKLEAGICYDPEDVLQELQS 171
++ GL+ Q+ ++ E E +K+P ++ I E Q L S
Sbjct: 61 VNAGLSEAQNGDVSKETGENVKKPSKKSSILTSDEAATQSLNS 103
>UNIPROTKB|Q8ECL2 [details] [associations]
symbol:SO_3125 "ATP-dependent RNA helicase DEAD box family"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
ProtClustDB:CLSK907013 RefSeq:NP_718686.1 ProteinModelPortal:Q8ECL2
GeneID:1170814 KEGG:son:SO_3125 PATRIC:23525896 OMA:AHLIKQH
Uniprot:Q8ECL2
Length = 427
Score = 192 (72.6 bits), Expect = 1.9e-12, P = 1.9e-12
Identities = 82/284 (28%), Positives = 126/284 (44%)
Query: 43 LQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLS-----NR 97
L +G S PVQ A TI L RD+ + TGSGKT ++ALP++Q LS ++
Sbjct: 24 LTELGYVSPTPVQAA----TIPAVLSGRDVLAGANTGSGKTAAFALPLLQRLSEAKSADK 79
Query: 98 AVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAG 157
+ +R LV++PTR+LA QV D F + A GQ I G
Sbjct: 80 SAGVVRCLVLVPTRELAQQVADSFLSYASHFN-------GQLKIVAAFG----------G 122
Query: 158 ICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAW 217
+ + + +Q L++ D+LVATPGRL+D + A+ L + V+DE DR+L +
Sbjct: 123 VSVNLQ--MQSLRAGADVLVATPGRLLDLL-ASNALKLTQVSAFVLDEADRMLSLGFTEE 179
Query: 218 LPTVLQ-LTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATL 276
L VL L R FS +TF + +E + + + + V++
Sbjct: 180 LEQVLAALPRQKQTLLFS--ATFPEEVRALTTKLLHQPLEYHLQSEQESTIEQRVITVNR 237
Query: 277 TQDPNKLAQLDLHHP-----LFLTTGETRYKLPERLESYKLICE 315
Q LA L H +F++ T L ++L + E
Sbjct: 238 EQKTALLAHLIKQHQWSQALIFVSAKNTCNHLAQKLSKRGISAE 281
>TIGR_CMR|SO_3125 [details] [associations]
symbol:SO_3125 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
ProtClustDB:CLSK907013 RefSeq:NP_718686.1 ProteinModelPortal:Q8ECL2
GeneID:1170814 KEGG:son:SO_3125 PATRIC:23525896 OMA:AHLIKQH
Uniprot:Q8ECL2
Length = 427
Score = 192 (72.6 bits), Expect = 1.9e-12, P = 1.9e-12
Identities = 82/284 (28%), Positives = 126/284 (44%)
Query: 43 LQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLS-----NR 97
L +G S PVQ A TI L RD+ + TGSGKT ++ALP++Q LS ++
Sbjct: 24 LTELGYVSPTPVQAA----TIPAVLSGRDVLAGANTGSGKTAAFALPLLQRLSEAKSADK 79
Query: 98 AVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAG 157
+ +R LV++PTR+LA QV D F + A GQ I G
Sbjct: 80 SAGVVRCLVLVPTRELAQQVADSFLSYASHFN-------GQLKIVAAFG----------G 122
Query: 158 ICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAW 217
+ + + +Q L++ D+LVATPGRL+D + A+ L + V+DE DR+L +
Sbjct: 123 VSVNLQ--MQSLRAGADVLVATPGRLLDLL-ASNALKLTQVSAFVLDEADRMLSLGFTEE 179
Query: 218 LPTVLQ-LTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATL 276
L VL L R FS +TF + +E + + + + V++
Sbjct: 180 LEQVLAALPRQKQTLLFS--ATFPEEVRALTTKLLHQPLEYHLQSEQESTIEQRVITVNR 237
Query: 277 TQDPNKLAQLDLHHP-----LFLTTGETRYKLPERLESYKLICE 315
Q LA L H +F++ T L ++L + E
Sbjct: 238 EQKTALLAHLIKQHQWSQALIFVSAKNTCNHLAQKLSKRGISAE 281
>UNIPROTKB|F1RY13 [details] [associations]
symbol:DDX18 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
OMA:KDGYRSY GeneTree:ENSGT00680000100037 EMBL:CU406995
Ensembl:ENSSSCT00000017112 Uniprot:F1RY13
Length = 671
Score = 132 (51.5 bits), Expect = 1.9e-12, Sum P(2) = 1.9e-12
Identities = 28/73 (38%), Positives = 46/73 (63%)
Query: 167 QELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTR 226
Q+L + ++I+VATPGRL+DH+ T GF ++L LV+DE DR+L ++ L +++L
Sbjct: 297 QKLANGINIVVATPGRLLDHMQNTPGFMYKNLQCLVIDEADRILDVGFEEELKQIIKLLP 356
Query: 227 SDNENR-FSDAST 238
+ + FS T
Sbjct: 357 TRRQTMLFSATQT 369
Score = 112 (44.5 bits), Expect = 1.9e-12, Sum P(2) = 1.9e-12
Identities = 45/154 (29%), Positives = 78/154 (50%)
Query: 1 MEEAKKKSMPVLPWMRSPVDVS-LFEDCPLDHLPCL--DPRLKVALQNMGISSLFPVQVA 57
ME+ K +P + P+ ++ FED L L + L+ A++ MG +++ +Q
Sbjct: 153 MEKPDKDDDTEVPSL--PLGLTGAFEDTSFASLTDLVNENTLR-AIKEMGFTNMTEIQ-- 207
Query: 58 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSN-RAV--RCLRALVVLPTRDLA 114
++I P L RDL + TGSGKTL++ +P V+ + R + L++ PTR+LA
Sbjct: 208 --HKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVELIVKLRFMPRNGTGVLILSPTRELA 265
Query: 115 LQVKDVFAAIAPAVGLSVGLAVGQSSIADEISEL 148
+Q V + + GL +G S+ + E +L
Sbjct: 266 MQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQKL 299
Score = 90 (36.7 bits), Expect = 5.9e-08, Sum P(2) = 5.9e-08
Identities = 36/126 (28%), Positives = 60/126 (47%)
Query: 254 GVERGFKD--KPYP-RLVKMVLSATLTQDPNKLAQLDLH-HPLFLTTGETRYKLP-ERLE 308
G E K K P R M+ SAT T+ LA++ L PL++ + + + LE
Sbjct: 343 GFEEELKQIIKLLPTRRQTMLFSATQTRKVEDLARISLKKEPLYVGVDDDKANATVDGLE 402
Query: 309 SYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGL 368
++C S+ + L L L+ ++K +VF SS +S LLN+ + + + G
Sbjct: 403 QGYVVCPSEKRFLLLFTFLKKNRKKKLMVFFSSCKSVKYHYELLNY---IDLPVLAIHGR 459
Query: 369 QRQSVR 374
Q+Q+ R
Sbjct: 460 QKQNKR 465
>UNIPROTKB|Q5L3G9 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:235909 "Geobacillus kaustophilus HTA426" [GO:0003723 "RNA
binding" evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISS] [GO:0005524 "ATP binding" evidence=ISS]
[GO:0043590 "bacterial nucleoid" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GO:GO:0043590 HOGENOM:HOG000268810 KO:K05592
OMA:IIDHINR HSSP:Q58083 EMBL:BA000043 RefSeq:YP_146079.1
ProteinModelPortal:Q5L3G9 GeneID:3184893 GenomeReviews:BA000043_GR
KEGG:gka:GK0226 PATRIC:21961545 ProtClustDB:CLSK712472
BioCyc:GKAU235909:GJO7-260-MONOMER Uniprot:Q5L3G9
Length = 467
Score = 137 (53.3 bits), Expect = 2.0e-12, Sum P(2) = 2.0e-12
Identities = 41/125 (32%), Positives = 63/125 (50%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
L + A++ MG P+Q +TI L +D+ + TG+GKT ++ +PIV+ +
Sbjct: 9 LSQEVMKAIERMGFEETTPIQA----KTIPLSLQNKDVIGQAQTGTGKTAAFGIPIVEKV 64
Query: 95 S--NRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRP 152
+ N AV+ ALVV PTR+LA+QV + I + V G I +I L K P
Sbjct: 65 NVKNSAVQ---ALVVAPTRELAIQVSEELYKIGAVKRVRVLPIYGGQDIERQIRALKKHP 121
Query: 153 KLEAG 157
+ G
Sbjct: 122 HVIVG 126
Score = 102 (41.0 bits), Expect = 2.0e-12, Sum P(2) = 2.0e-12
Identities = 39/156 (25%), Positives = 73/156 (46%)
Query: 161 DPEDVLQELQSAVDILVATPGRLMDHINATRG-FTLEHLCYLVVDETDRLLREAYQAWLP 219
D E ++ L+ ++V TPGR++DHIN RG LEH+ +V+DE D +L + +
Sbjct: 109 DIERQIRALKKHPHVIVGTPGRIIDHIN--RGTLRLEHVHTVVLDEADEMLNMGFIEDIE 166
Query: 220 TVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCG-VERGFKDKPYPRLVKMVLSATLTQ 278
+L ++ + A+ P + + + V+ K+ P + + L +
Sbjct: 167 AILSHVPAERQTLLFSATMPDPIRRIAERFMNEPELVKVKAKEMTVPNIQQYYLEVHEKK 226
Query: 279 DPNKLAQL-DLHHP-LFLTTGETRYKLPERLESYKL 312
+ L +L D+ P L + G T+ ++ E E+ L
Sbjct: 227 KFDILTRLLDIQAPELAIVFGRTKRRVDELAEALNL 262
Score = 57 (25.1 bits), Expect = 8.6e-08, Sum P(2) = 8.6e-08
Identities = 27/107 (25%), Positives = 42/107 (39%)
Query: 270 MVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQS 329
++ SAT+ ++A+ ++ P + +P ++ Y L K K L LL
Sbjct: 179 LLFSATMPDPIRRIAERFMNEPELVKVKAKEMTVPN-IQQYYLEVHEKKKFDILTRLLDI 237
Query: 330 LGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIK-EYSGLQRQSVRR 375
E IVF + L LN G I + S +R SV R
Sbjct: 238 QAPELAIVFGRTKRRVDELAEALNLRGYAAEGIHGDLSQAKRLSVLR 284
>UNIPROTKB|I3L7B7 [details] [associations]
symbol:DDX18 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005730 "nucleolus" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005730 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
GeneTree:ENSGT00680000100037 EMBL:CU406995
Ensembl:ENSSSCT00000025125 Uniprot:I3L7B7
Length = 696
Score = 132 (51.5 bits), Expect = 2.1e-12, Sum P(2) = 2.1e-12
Identities = 28/73 (38%), Positives = 46/73 (63%)
Query: 167 QELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTR 226
Q+L + ++I+VATPGRL+DH+ T GF ++L LV+DE DR+L ++ L +++L
Sbjct: 322 QKLANGINIVVATPGRLLDHMQNTPGFMYKNLQCLVIDEADRILDVGFEEELKQIIKLLP 381
Query: 227 SDNENR-FSDAST 238
+ + FS T
Sbjct: 382 TRRQTMLFSATQT 394
Score = 112 (44.5 bits), Expect = 2.1e-12, Sum P(2) = 2.1e-12
Identities = 45/154 (29%), Positives = 78/154 (50%)
Query: 1 MEEAKKKSMPVLPWMRSPVDVS-LFEDCPLDHLPCL--DPRLKVALQNMGISSLFPVQVA 57
ME+ K +P + P+ ++ FED L L + L+ A++ MG +++ +Q
Sbjct: 178 MEKPDKDDDTEVPSL--PLGLTGAFEDTSFASLTDLVNENTLR-AIKEMGFTNMTEIQ-- 232
Query: 58 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSN-RAV--RCLRALVVLPTRDLA 114
++I P L RDL + TGSGKTL++ +P V+ + R + L++ PTR+LA
Sbjct: 233 --HKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVELIVKLRFMPRNGTGVLILSPTRELA 290
Query: 115 LQVKDVFAAIAPAVGLSVGLAVGQSSIADEISEL 148
+Q V + + GL +G S+ + E +L
Sbjct: 291 MQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQKL 324
Score = 90 (36.7 bits), Expect = 6.4e-08, Sum P(2) = 6.4e-08
Identities = 36/126 (28%), Positives = 60/126 (47%)
Query: 254 GVERGFKD--KPYP-RLVKMVLSATLTQDPNKLAQLDLH-HPLFLTTGETRYKLP-ERLE 308
G E K K P R M+ SAT T+ LA++ L PL++ + + + LE
Sbjct: 368 GFEEELKQIIKLLPTRRQTMLFSATQTRKVEDLARISLKKEPLYVGVDDDKANATVDGLE 427
Query: 309 SYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGL 368
++C S+ + L L L+ ++K +VF SS +S LLN+ + + + G
Sbjct: 428 QGYVVCPSEKRFLLLFTFLKKNRKKKLMVFFSSCKSVKYHYELLNY---IDLPVLAIHGR 484
Query: 369 QRQSVR 374
Q+Q+ R
Sbjct: 485 QKQNKR 490
Score = 49 (22.3 bits), Expect = 6.5e-06, Sum P(2) = 6.5e-06
Identities = 12/43 (27%), Positives = 22/43 (51%)
Query: 130 LSVGLAVGQSS-IADEISELIKRPKLEAGICYDPEDVLQELQS 171
++ GL+ Q+ ++ E E +K+P ++ I E Q L S
Sbjct: 90 VNAGLSEAQNGDVSKETGENVKKPSKKSSILTSDEAATQSLNS 132
>UNIPROTKB|Q9NVP1 [details] [associations]
symbol:DDX18 "ATP-dependent RNA helicase DDX18"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=TAS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005730 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
InterPro:IPR025313 Pfam:PF13959 HOGENOM:HOG000268799 KO:K13179
OMA:KDGYRSY EMBL:AK001467 EMBL:BC001238 EMBL:BC003360 EMBL:BC024739
EMBL:X98743 EMBL:CR457060 IPI:IPI00301323 PIR:S71758
RefSeq:NP_006764.3 UniGene:Hs.363492 PDB:3LY5 PDBsum:3LY5
ProteinModelPortal:Q9NVP1 SMR:Q9NVP1 IntAct:Q9NVP1
MINT:MINT-1382348 STRING:Q9NVP1 PhosphoSite:Q9NVP1 DMDM:20532388
SWISS-2DPAGE:Q9NVP1 PaxDb:Q9NVP1 PeptideAtlas:Q9NVP1 PRIDE:Q9NVP1
Ensembl:ENST00000263239 GeneID:8886 KEGG:hsa:8886 UCSC:uc002tlh.1
CTD:8886 GeneCards:GC02P118572 HGNC:HGNC:2741 HPA:HPA035400
MIM:606355 neXtProt:NX_Q9NVP1 PharmGKB:PA27207 HOVERGEN:HBG105702
InParanoid:Q9NVP1 OrthoDB:EOG4894MF PhylomeDB:Q9NVP1
ChEMBL:CHEMBL5060 ChiTaRS:DDX18 EvolutionaryTrace:Q9NVP1
GenomeRNAi:8886 NextBio:33369 ArrayExpress:Q9NVP1 Bgee:Q9NVP1
CleanEx:HS_DDX18 Genevestigator:Q9NVP1 GermOnline:ENSG00000088205
Uniprot:Q9NVP1
Length = 670
Score = 132 (51.5 bits), Expect = 2.4e-12, Sum P(2) = 2.4e-12
Identities = 28/73 (38%), Positives = 46/73 (63%)
Query: 167 QELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTR 226
Q+L + ++I+VATPGRL+DH+ T GF ++L LV+DE DR+L ++ L +++L
Sbjct: 296 QKLGNGINIIVATPGRLLDHMQNTPGFMYKNLQCLVIDEADRILDVGFEEELKQIIKLLP 355
Query: 227 SDNENR-FSDAST 238
+ + FS T
Sbjct: 356 TRRQTMLFSATQT 368
Score = 111 (44.1 bits), Expect = 2.4e-12, Sum P(2) = 2.4e-12
Identities = 41/130 (31%), Positives = 67/130 (51%)
Query: 24 FEDCPLDHLPCL--DPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSG 81
FED L L + LK A++ MG +++ +Q ++I P L RDL + TGSG
Sbjct: 174 FEDTSFASLCNLVNENTLK-AIKEMGFTNMTEIQ----HKSIRPLLEGRDLLAAAKTGSG 228
Query: 82 KTLSYALPIVQTLSN-RAV--RCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQ 138
KTL++ +P V+ + R + L++ PTR+LA+Q V + + GL +G
Sbjct: 229 KTLAFLIPAVELIVKLRFMPRNGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGG 288
Query: 139 SSIADEISEL 148
S+ + E +L
Sbjct: 289 SNRSAEAQKL 298
Score = 87 (35.7 bits), Expect = 1.5e-07, Sum P(2) = 1.5e-07
Identities = 36/126 (28%), Positives = 59/126 (46%)
Query: 254 GVERGFKD--KPYP-RLVKMVLSATLTQDPNKLAQLDLH-HPLFLTTGETRYKLP-ERLE 308
G E K K P R M+ SAT T+ LA++ L PL++ + + + LE
Sbjct: 342 GFEEELKQIIKLLPTRRQTMLFSATQTRKVEDLARISLKKEPLYVGVDDDKANATVDGLE 401
Query: 309 SYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGL 368
++C S+ + L L L+ ++K +VF SS S LLN+ + + + G
Sbjct: 402 QGYVVCPSEKRFLLLFTFLKKNRKKKLMVFFSSCMSVKYHYELLNY---IDLPVLAIHGK 458
Query: 369 QRQSVR 374
Q+Q+ R
Sbjct: 459 QKQNKR 464
>MGI|MGI:1919240 [details] [associations]
symbol:Ddx54 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 54"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003714 "transcription corepressor activity" evidence=ISO]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004004 "ATP-dependent
RNA helicase activity" evidence=ISO] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005102 "receptor binding"
evidence=ISO] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISO] [GO:0005730 "nucleolus" evidence=ISO]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0006396 "RNA processing" evidence=ISO]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0016070 "RNA metabolic process" evidence=ISO] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0016818 "hydrolase activity,
acting on acid anhydrides, in phosphorus-containing anhydrides"
evidence=IEA] [GO:0030331 "estrogen receptor binding" evidence=ISO]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012541 Pfam:PF00270 Pfam:PF00271 Pfam:PF08147
ProDom:PD024971 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
MGI:MGI:1919240 GO:GO:0005524 GO:GO:0003714 GO:GO:0005730
GO:GO:0006355 GO:GO:0006351 GO:GO:0003723 GO:GO:0006396
GO:GO:0030331 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K14808 HOGENOM:HOG000246455 OMA:FYIPYRP
GeneTree:ENSGT00550000075100 CTD:79039 HOVERGEN:HBG051333
EMBL:AF319547 EMBL:BC043699 IPI:IPI00875042 RefSeq:NP_082317.1
UniGene:Mm.24495 ProteinModelPortal:Q8K4L0 SMR:Q8K4L0 STRING:Q8K4L0
PhosphoSite:Q8K4L0 PaxDb:Q8K4L0 PRIDE:Q8K4L0
Ensembl:ENSMUST00000031598 GeneID:71990 KEGG:mmu:71990
UCSC:uc008zhq.1 NextBio:335150 Bgee:Q8K4L0 CleanEx:MM_DDX54
Genevestigator:Q8K4L0 Uniprot:Q8K4L0
Length = 874
Score = 131 (51.2 bits), Expect = 2.4e-12, Sum P(3) = 2.4e-12
Identities = 32/104 (30%), Positives = 54/104 (51%)
Query: 52 FPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRC-LRALVVLPT 110
+ V + ++TI L +D+ + TGSGKT + LP+ + L R+ + RAL++ PT
Sbjct: 115 YKVPTPIQRKTIPVILDGKDVVAMARTGSGKTACFLLPMFERLKARSAQTGARALILSPT 174
Query: 111 RDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKL 154
R+LALQ + GL L +G + D+ + L + P +
Sbjct: 175 RELALQTMKFTKELGKFTGLKTALILGGDKMEDQFAALHENPDI 218
Score = 94 (38.1 bits), Expect = 2.4e-12, Sum P(3) = 2.4e-12
Identities = 21/60 (35%), Positives = 31/60 (51%)
Query: 163 EDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVL 222
ED L DI++ATPGRL+ H+ L+ + Y+V DE DRL + L ++
Sbjct: 206 EDQFAALHENPDIIIATPGRLV-HVAVEMNLKLQSVEYVVFDEADRLFEMGFAEQLQEII 264
Score = 62 (26.9 bits), Expect = 2.4e-12, Sum P(3) = 2.4e-12
Identities = 29/108 (26%), Positives = 52/108 (48%)
Query: 270 MVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQS 329
++ SATL + + A+ L P+ + + KL E+L++ L+ K L+ LLQ+
Sbjct: 274 VLFSATLPKLLVEFARAGLTEPVLIRL-DVDSKLNEQLKTSFLLVREDTKAAVLLYLLQN 332
Query: 330 L--GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRR 375
+ +++ +VF ++ L LL G I YS L Q+ R+
Sbjct: 333 VVRPQDQTVVFVATKHHAEYLTELLMGQGVSCAHI--YSALD-QTARK 377
>CGD|CAL0004095 [details] [associations]
symbol:TIF species:5476 "Candida albicans" [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0006413
"translational initiation" evidence=ISS] [GO:0005829 "cytosol"
evidence=IEA] [GO:0005886 "plasma membrane" evidence=IEA]
[GO:0016281 "eukaryotic translation initiation factor 4F complex"
evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 CGD:CAL0004095 GO:GO:0005524
GO:GO:0005737 GO:GO:0003743 EMBL:AACQ01000045 EMBL:AACQ01000042
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 KO:K03257
EMBL:D84472 RefSeq:XP_718147.1 RefSeq:XP_718416.1
ProteinModelPortal:P87206 STRING:P87206 PRIDE:P87206 GeneID:3639917
GeneID:3640190 KEGG:cal:CaO19.10834 KEGG:cal:CaO19.3324
Uniprot:P87206
Length = 397
Score = 138 (53.6 bits), Expect = 3.5e-12, Sum P(3) = 3.5e-12
Identities = 30/89 (33%), Positives = 56/89 (62%)
Query: 57 AVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQ 116
A+ Q I P RD+ + +G+GKT ++ + +Q + N + +AL++ PTR+LALQ
Sbjct: 48 AIQQRAILPITEGRDVLAQAQSGTGKTATFTISALQRI-NENEKATQALILAPTRELALQ 106
Query: 117 VKDVFAAIAPAVGLSVGLAVGQSSIADEI 145
+K+V AI + ++V ++G +S++D+I
Sbjct: 107 IKNVITAIGLYLKVTVHASIGGTSMSDDI 135
Score = 86 (35.3 bits), Expect = 3.5e-12, Sum P(3) = 3.5e-12
Identities = 18/61 (29%), Positives = 34/61 (55%)
Query: 164 DVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQ 223
D ++ +S V I+V TPGR++D I R F + + ++DE D +L ++ + + +
Sbjct: 133 DDIEAFRSGVQIVVGTPGRVLDMIER-RYFKTDKVKMFILDEADEMLSSGFKEQIYNIFR 191
Query: 224 L 224
L
Sbjct: 192 L 192
Score = 46 (21.3 bits), Expect = 3.5e-12, Sum P(3) = 3.5e-12
Identities = 25/108 (23%), Positives = 49/108 (45%)
Query: 258 GFKDKPY------PRLVKMVL-SATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESY 310
GFK++ Y P ++VL SAT+ QD ++ +++P+ + + L E ++ +
Sbjct: 181 GFKEQIYNIFRLLPETTQIVLLSATMPQDVLEVTTKFMNNPVRILVKKDELTL-EGIKQF 239
Query: 311 KLICESK-LKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLN--HF 355
+ E + K L L S+ + ++F ++ L L HF
Sbjct: 240 YINVELEDYKFDCLCDLYDSISVTQAVIFCNTRSKVEFLTNKLREQHF 287
>UNIPROTKB|P87206 [details] [associations]
symbol:TIF1 "ATP-dependent RNA helicase eIF4A"
species:237561 "Candida albicans SC5314" [GO:0003743 "translation
initiation factor activity" evidence=ISS] [GO:0006413
"translational initiation" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 CGD:CAL0004095
GO:GO:0005524 GO:GO:0005737 GO:GO:0003743 EMBL:AACQ01000045
EMBL:AACQ01000042 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K03257 EMBL:D84472 RefSeq:XP_718147.1 RefSeq:XP_718416.1
ProteinModelPortal:P87206 STRING:P87206 PRIDE:P87206 GeneID:3639917
GeneID:3640190 KEGG:cal:CaO19.10834 KEGG:cal:CaO19.3324
Uniprot:P87206
Length = 397
Score = 138 (53.6 bits), Expect = 3.5e-12, Sum P(3) = 3.5e-12
Identities = 30/89 (33%), Positives = 56/89 (62%)
Query: 57 AVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQ 116
A+ Q I P RD+ + +G+GKT ++ + +Q + N + +AL++ PTR+LALQ
Sbjct: 48 AIQQRAILPITEGRDVLAQAQSGTGKTATFTISALQRI-NENEKATQALILAPTRELALQ 106
Query: 117 VKDVFAAIAPAVGLSVGLAVGQSSIADEI 145
+K+V AI + ++V ++G +S++D+I
Sbjct: 107 IKNVITAIGLYLKVTVHASIGGTSMSDDI 135
Score = 86 (35.3 bits), Expect = 3.5e-12, Sum P(3) = 3.5e-12
Identities = 18/61 (29%), Positives = 34/61 (55%)
Query: 164 DVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQ 223
D ++ +S V I+V TPGR++D I R F + + ++DE D +L ++ + + +
Sbjct: 133 DDIEAFRSGVQIVVGTPGRVLDMIER-RYFKTDKVKMFILDEADEMLSSGFKEQIYNIFR 191
Query: 224 L 224
L
Sbjct: 192 L 192
Score = 46 (21.3 bits), Expect = 3.5e-12, Sum P(3) = 3.5e-12
Identities = 25/108 (23%), Positives = 49/108 (45%)
Query: 258 GFKDKPY------PRLVKMVL-SATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESY 310
GFK++ Y P ++VL SAT+ QD ++ +++P+ + + L E ++ +
Sbjct: 181 GFKEQIYNIFRLLPETTQIVLLSATMPQDVLEVTTKFMNNPVRILVKKDELTL-EGIKQF 239
Query: 311 KLICESK-LKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLN--HF 355
+ E + K L L S+ + ++F ++ L L HF
Sbjct: 240 YINVELEDYKFDCLCDLYDSISVTQAVIFCNTRSKVEFLTNKLREQHF 287
>DICTYBASE|DDB_G0292992 [details] [associations]
symbol:helA "putative RNA helicase" species:44689
"Dictyostelium discoideum" [GO:0016818 "hydrolase activity, acting
on acid anhydrides, in phosphorus-containing anhydrides"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0042254 "ribosome
biogenesis" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0006364 "rRNA processing" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012541 Pfam:PF00270 Pfam:PF00271
Pfam:PF08147 ProDom:PD024971 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 dictyBase:DDB_G0292992 GO:GO:0005524
GenomeReviews:CM000155_GR GO:GO:0005730 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
EMBL:AAFI02000199 KO:K14808 HSSP:P10081 EMBL:X81822
RefSeq:XP_629281.1 ProteinModelPortal:Q54CD8 STRING:Q54CD8
EnsemblProtists:DDB0215372 GeneID:8629004 KEGG:ddi:DDB_G0292992
OMA:RLPKDGH ProtClustDB:CLSZ2429315 Uniprot:Q54CD8
Length = 1091
Score = 127 (49.8 bits), Expect = 3.6e-12, Sum P(3) = 3.6e-12
Identities = 31/104 (29%), Positives = 57/104 (54%)
Query: 52 FPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRC-LRALVVLPT 110
F V + +++I L D+ + TGSGKT ++ +P++Q L + + +RA+++ PT
Sbjct: 250 FNVPTPIQRKSIPMILDGHDIVGMARTGSGKTGAFVIPMIQKLGDHSTTVGVRAVILSPT 309
Query: 111 RDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKL 154
R+LA+Q V + L L VG S+ D+ ++L + P +
Sbjct: 310 RELAIQTFKVVKDFSQGTQLRTILIVGGDSMEDQFTDLARNPDI 353
Score = 120 (47.3 bits), Expect = 3.6e-12, Sum P(3) = 3.6e-12
Identities = 31/80 (38%), Positives = 43/80 (53%)
Query: 163 EDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVL 222
ED +L DI++ATPGRLM H+ T G +L + Y+V DE DRL + L +L
Sbjct: 341 EDQFTDLARNPDIIIATPGRLMHHLLET-GMSLSKVQYIVFDEADRLFEMGFNEQLTEIL 399
Query: 223 QLTRSDNENRFSDASTFLPS 242
S+N ++T LPS
Sbjct: 400 SKL-SENRQTLLFSAT-LPS 417
Score = 42 (19.8 bits), Expect = 3.6e-12, Sum P(3) = 3.6e-12
Identities = 14/45 (31%), Positives = 21/45 (46%)
Query: 313 ICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGE 357
+ ES+ K LYL +LG E S +++ RL L + E
Sbjct: 757 VIESQQKKLYLQQSETNLGPENEEFDYSKLDTRKRLLQLTENITE 801
>UNIPROTKB|F8VRX4 [details] [associations]
symbol:DDX54 "ATP-dependent RNA helicase DDX54"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR011545 Pfam:PF00270 PROSITE:PS00039
GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
EMBL:AC089999 HGNC:HGNC:20084 ChiTaRS:DDX54 IPI:IPI01022245
ProteinModelPortal:F8VRX4 SMR:F8VRX4 Ensembl:ENST00000552375
ArrayExpress:F8VRX4 Bgee:F8VRX4 Uniprot:F8VRX4
Length = 208
Score = 126 (49.4 bits), Expect = 4.0e-12, Sum P(2) = 4.0e-12
Identities = 31/104 (29%), Positives = 53/104 (50%)
Query: 52 FPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRC-LRALVVLPT 110
+ V + ++TI L +D+ + TGSGKT + LP+ + L + + RAL++ PT
Sbjct: 33 YKVPTPIQRKTIPVILDGKDVVAMARTGSGKTACFLLPMFERLKTHSAQTGARALILSPT 92
Query: 111 RDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKL 154
R+LALQ + GL L +G + D+ + L + P +
Sbjct: 93 RELALQTLKFTKELGKFTGLKTALILGGDRMEDQFAALHENPDI 136
Score = 94 (38.1 bits), Expect = 4.0e-12, Sum P(2) = 4.0e-12
Identities = 21/60 (35%), Positives = 31/60 (51%)
Query: 163 EDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVL 222
ED L DI++ATPGRL+ H+ L+ + Y+V DE DRL + L ++
Sbjct: 124 EDQFAALHENPDIIIATPGRLV-HVAVEMSLKLQSVEYVVFDEADRLFEMGFAEQLQEII 182
>UNIPROTKB|F1SSH6 [details] [associations]
symbol:DDX56 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005730 "nucleolus" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005730 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
OMA:TFLMSAT GeneTree:ENSGT00550000074946 EMBL:CU856650
Ensembl:ENSSSCT00000018227 Uniprot:F1SSH6
Length = 545
Score = 148 (57.2 bits), Expect = 2.7e-07, P = 2.7e-07
Identities = 81/300 (27%), Positives = 132/300 (44%)
Query: 30 DHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALP 89
+H+ LDPRL A+ ++G S P + QE I L +D + + G GKT +YA+P
Sbjct: 10 EHMG-LDPRLLQAVTDLGWSR--PTLI---QEKIPLALEGKDSWLGAARGQGKTAAYAIP 63
Query: 90 IVQTLSNR-----AV-RCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIAD 143
++Q L +R AV + +R LV++PT+DLA Q + + +A + +A S+ D
Sbjct: 64 MLQLLLHRKAIGPAVEQAVRGLVLVPTKDLARQAQSMIQQLAAYCARDIRVA-NVSAAED 122
Query: 144 EISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVV 203
S+ VL E DI+V TP R+++H+ + L LVV
Sbjct: 123 SASQ---------------RAVLMEKP---DIVVGTPSRILNHLQQDNLKLRDSLELLVV 164
Query: 204 DETDRLLREAYQAWLPTVL-QLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDK 262
DE D L ++ L ++L L R F ++TF + + V ++
Sbjct: 165 DEADLLFSFGFEEELKSLLCHLPRI--YQAFLMSATFNEDVQALKELVLHNPVTLKLQES 222
Query: 263 PYP---RLVKMVLSATLTQDP----NKLAQLDLHHP---LFLTTGETRYKLPERLESYKL 312
P +L + + +D L +L L LF+ T E Y+L LE + +
Sbjct: 223 QLPGPDQLQQFQVVCETEEDKFLLLYALLKLSLIRGKSLLFVNTLERSYRLRLFLEQFSI 282
Score = 131 (51.2 bits), Expect = 4.5e-12, Sum P(2) = 4.5e-12
Identities = 32/94 (34%), Positives = 59/94 (62%)
Query: 265 PRLVK-MVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKL-KPLY 322
PR+ + ++SAT +D L +L LH+P+ L E++ P++L+ ++++CE++ K L
Sbjct: 187 PRIYQAFLMSATFNEDVQALKELVLHNPVTLKLQESQLPGPDQLQQFQVVCETEEDKFLL 246
Query: 323 LVALLQ-SLGEEKCIVFTSSVESTHRLCTLLNHF 355
L ALL+ SL K ++F +++E ++RL L F
Sbjct: 247 LYALLKLSLIRGKSLLFVNTLERSYRLRLFLEQF 280
Score = 107 (42.7 bits), Expect = 4.5e-12, Sum P(2) = 4.5e-12
Identities = 53/198 (26%), Positives = 83/198 (41%)
Query: 36 DPRLKVALQNMGISS--LFPVQVAVW------QETIGPGLFERDLCINSPTGSGKTLSYA 87
DP L + ++MG+ L V W QE I L +D + + G GKT +YA
Sbjct: 3 DPEL-LGFEHMGLDPRLLQAVTDLGWSRPTLIQEKIPLALEGKDSWLGAARGQGKTAAYA 61
Query: 88 LPIVQTLSNRAVRCLRALVVLPTRDLAL-QVKDVFAAIAPAVGLSVGLAVGQSSIADEIS 146
+P++Q L +R + + V R L L KD LA S+ +++
Sbjct: 62 IPMLQLLLHR--KAIGPAVEQAVRGLVLVPTKD--------------LARQAQSMIQQLA 105
Query: 147 ELIKRPKLEAGICYDPEDVLQE--LQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVD 204
R A + + Q L DI+V TP R+++H+ + L LVVD
Sbjct: 106 AYCARDIRVANVSAAEDSASQRAVLMEKPDIVVGTPSRILNHLQQDNLKLRDSLELLVVD 165
Query: 205 ETDRLLREAYQAWLPTVL 222
E D L ++ L ++L
Sbjct: 166 EADLLFSFGFEEELKSLL 183
>RGD|621743 [details] [associations]
symbol:Ddx52 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 52"
species:10116 "Rattus norvegicus" [GO:0003723 "RNA binding"
evidence=IEA] [GO:0003724 "RNA helicase activity" evidence=NAS]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0006364 "rRNA processing" evidence=TAS]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 RGD:621743
GO:GO:0005524 GO:GO:0005730 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026
eggNOG:COG0513 GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195
CTD:11056 GeneTree:ENSGT00550000074863 HOGENOM:HOG000242486
HOVERGEN:HBG051332 KO:K14779 OMA:NVMKQSG OrthoDB:EOG4XKV6Q
EMBL:AB055628 IPI:IPI00201365 RefSeq:NP_445977.1 UniGene:Rn.18605
ProteinModelPortal:Q99PT0 SMR:Q99PT0 PRIDE:Q99PT0
Ensembl:ENSRNOT00000003600 GeneID:85432 KEGG:rno:85432
InParanoid:Q99PT0 NextBio:617542 Genevestigator:Q99PT0
GermOnline:ENSRNOG00000002612 Uniprot:Q99PT0
Length = 598
Score = 151 (58.2 bits), Expect = 5.1e-12, Sum P(3) = 5.1e-12
Identities = 41/125 (32%), Positives = 69/125 (55%)
Query: 18 PVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSP 77
P ++ F+ LD + PRL LQN+ + + F V + + I L R+L ++P
Sbjct: 158 PDPIATFQQ--LDQEYKISPRL---LQNI-LDAGFQVPTPIQMQAIPVMLHGRELLASAP 211
Query: 78 TGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVG 137
TGSGKTL++++PI+ L + RALV+ PTR+LA Q+ I+ G + + +
Sbjct: 212 TGSGKTLAFSIPILMQLKQPTNKGFRALVISPTRELASQIHRELIKISEGTGFRIHM-IH 270
Query: 138 QSSIA 142
+++IA
Sbjct: 271 KAAIA 275
Score = 69 (29.3 bits), Expect = 5.1e-12, Sum P(3) = 5.1e-12
Identities = 22/70 (31%), Positives = 35/70 (50%)
Query: 174 DILVATPGRLMDHINATR-GFTLEHLCYLVVDETDRLLREA---YQAWLPTVLQLTRSDN 229
DILV TP RL+ + G L + +LVVDE+D+L + ++ L ++ S
Sbjct: 288 DILVTTPNRLIYLLKQEPPGIDLTSVEWLVVDESDKLFEDGKTGFRDQLASIFLACTSPK 347
Query: 230 ENRFSDASTF 239
R ++TF
Sbjct: 348 VRRAMFSATF 357
Score = 55 (24.4 bits), Expect = 5.1e-12, Sum P(3) = 5.1e-12
Identities = 21/85 (24%), Positives = 37/85 (43%)
Query: 265 PRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLV 324
P++ + + SAT D + +L+L + + ++ G R E +E L S+ L +
Sbjct: 346 PKVRRAMFSATFAYDVEQWCKLNLDNIVSVSIG-ARNSAVETVEQELLFVGSETGKLLAM 404
Query: 325 ALLQSLG-EEKCIVFTSSVESTHRL 348
L G +VF S+E L
Sbjct: 405 RELVKKGFNPPVLVFVQSIERAKEL 429
>MGI|MGI:1919236 [details] [associations]
symbol:Ddx28 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 28"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=IDA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008150 "biological_process" evidence=ND]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0042645
"mitochondrial nucleoid" evidence=ISO] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 MGI:MGI:1919236 GO:GO:0005739
GO:GO:0005524 GO:GO:0005730 GO:GO:0003723 GO:GO:0042645
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 CTD:55794
HOGENOM:HOG000008689 HOVERGEN:HBG081424 OrthoDB:EOG42RD7H
EMBL:AK010396 EMBL:AK163480 EMBL:BC120556 EMBL:BC120582
IPI:IPI00109544 RefSeq:NP_082314.2 UniGene:Mm.307515
ProteinModelPortal:Q9CWT6 SMR:Q9CWT6 PhosphoSite:Q9CWT6
PRIDE:Q9CWT6 Ensembl:ENSMUST00000058579 GeneID:71986 KEGG:mmu:71986
GeneTree:ENSGT00670000098028 InParanoid:Q0VBM0 OMA:LCSKGWK
NextBio:335138 Bgee:Q9CWT6 CleanEx:MM_DDX28 Genevestigator:Q9CWT6
GermOnline:ENSMUSG00000045538 Uniprot:Q9CWT6
Length = 540
Score = 190 (71.9 bits), Expect = 5.4e-12, P = 5.4e-12
Identities = 67/198 (33%), Positives = 101/198 (51%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
L+PR+ +ALQ + P V +TI P L R L + TGSGKTLSY LP+ Q L
Sbjct: 133 LEPRVLLALQEAVPEVVQPTSVQ--SKTIPPLLRGRHLLCAAETGSGKTLSYLLPLFQRL 190
Query: 95 ------SNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSV---GLAVGQSSIADEI 145
+R+ R LV++P+R+LA QV+ V ++ +GL V G +G S +
Sbjct: 191 LRGSDLDSRSFTAPRGLVLVPSRELAEQVQAVAQSLGGYLGLQVIELGGGLGMSRLK--- 247
Query: 146 SELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDE 205
+L +RP A D+LVATPG L + + +L+HL ++V+DE
Sbjct: 248 LQLYRRP-------------------AADVLVATPGALWKALKSQL-ISLQHLNFIVLDE 287
Query: 206 TDRLLREAYQAWLPTVLQ 223
D LL E++ + +L+
Sbjct: 288 VDTLLDESFLELVDYILE 305
>MGI|MGI:1925644 [details] [associations]
symbol:Ddx52 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 52"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008150 "biological_process" evidence=ND]
[GO:0016787 "hydrolase activity" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 MGI:MGI:1925644 GO:GO:0005524
GO:GO:0005730 GO:GO:0003723 EMBL:CH466556 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 CTD:11056
GeneTree:ENSGT00550000074863 HOGENOM:HOG000242486
HOVERGEN:HBG051332 KO:K14779 OMA:NVMKQSG OrthoDB:EOG4XKV6Q
EMBL:AK080767 EMBL:AK133545 EMBL:AL645615 EMBL:BC029094
IPI:IPI00336965 RefSeq:NP_084372.2 UniGene:Mm.280544
ProteinModelPortal:Q8K301 SMR:Q8K301 STRING:Q8K301
PhosphoSite:Q8K301 PaxDb:Q8K301 PRIDE:Q8K301
Ensembl:ENSMUST00000049257 GeneID:78394 KEGG:mmu:78394
InParanoid:Q3UZY9 NextBio:348796 Bgee:Q8K301 CleanEx:MM_DDX52
Genevestigator:Q8K301 GermOnline:ENSMUSG00000020677 Uniprot:Q8K301
Length = 598
Score = 145 (56.1 bits), Expect = 7.7e-12, Sum P(3) = 7.7e-12
Identities = 38/118 (32%), Positives = 64/118 (54%)
Query: 28 PLDHLPCLDPRLKV---ALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTL 84
P+ LD K+ LQN+ + + F V + + I L R+L ++PTGSGKTL
Sbjct: 160 PIATFQQLDQEYKINSRLLQNI-LDAGFQVPTPIQMQAIPVMLHGRELLASAPTGSGKTL 218
Query: 85 SYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIA 142
++++PI+ L + RALV+ PTR+LA Q+ I+ G + + + +++IA
Sbjct: 219 AFSIPILMQLKQPTNKGFRALVISPTRELASQIHRELIKISEGTGFRIHM-IHKAAIA 275
Score = 72 (30.4 bits), Expect = 7.7e-12, Sum P(3) = 7.7e-12
Identities = 22/70 (31%), Positives = 36/70 (51%)
Query: 174 DILVATPGRLMDHINATR-GFTLEHLCYLVVDETDRLLREA---YQAWLPTVLQLTRSDN 229
DILV TP RL+ + G L ++ +LVVDE+D+L + ++ L ++ S
Sbjct: 288 DILVTTPNRLIYLLKQDPPGIDLTNVEWLVVDESDKLFEDGKTGFREQLASIFLACTSPK 347
Query: 230 ENRFSDASTF 239
R ++TF
Sbjct: 348 VRRAMFSATF 357
Score = 57 (25.1 bits), Expect = 7.7e-12, Sum P(3) = 7.7e-12
Identities = 21/85 (24%), Positives = 38/85 (44%)
Query: 265 PRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLV 324
P++ + + SAT D + +L+L + + ++ G R E +E L S+ L +
Sbjct: 346 PKVRRAMFSATFAYDVEQWCKLNLDNVVSVSIG-ARNSAVETVEQELLFVGSETGKLLAM 404
Query: 325 ALLQSLG-EEKCIVFTSSVESTHRL 348
L G + +VF S+E L
Sbjct: 405 RELVKKGFKPPVLVFVQSIERAKEL 429
Score = 41 (19.5 bits), Expect = 1.0e-06, Sum P(2) = 1.0e-06
Identities = 8/31 (25%), Positives = 17/31 (54%)
Query: 138 QSSIADEISELIKRPKLEAGICYDPEDVLQE 168
Q ++ + ++IK+P IC P+ L++
Sbjct: 547 QKLLSKQKKKMIKKPLERESICTTPKYFLEQ 577
>WB|WBGene00019219 [details] [associations]
symbol:H20J04.4 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0040010 "positive regulation of growth rate"
evidence=IMP] [GO:0002009 "morphogenesis of an epithelium"
evidence=IMP] [GO:0000003 "reproduction" evidence=IMP] [GO:0040035
"hermaphrodite genitalia development" evidence=IMP]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0002009 GO:GO:0040010
GO:GO:0003676 GO:GO:0040035 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K14778 HOGENOM:HOG000268802
GeneTree:ENSGT00670000098028 OMA:CQLLSMT EMBL:FO080156
RefSeq:NP_001040789.1 ProteinModelPortal:Q2WF63 SMR:Q2WF63
PaxDb:Q2WF63 EnsemblMetazoa:H20J04.4b GeneID:186756
KEGG:cel:CELE_H20J04.4 UCSC:H20J04.4a CTD:186756 WormBase:H20J04.4b
InParanoid:Q2WF63 NextBio:932876 ArrayExpress:Q2WF63 Uniprot:Q2WF63
Length = 561
Score = 152 (58.6 bits), Expect = 1.0e-11, Sum P(2) = 1.0e-11
Identities = 41/111 (36%), Positives = 62/111 (55%)
Query: 43 LQNMGISSLFPVQVAVWQETIGPGLFE-RDLCINSPTGSGKTLSYALPIVQTLSNRAVRC 101
LQ M I + PVQ A P + E D+ + TG+GKTL++A+PI+Q LS
Sbjct: 104 LQTMQIKTATPVQAACI-----PKILEGSDILGCARTGTGKTLAFAIPILQKLSVDPYG- 157
Query: 102 LRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRP 152
+ AL++ PTR+LA Q+ + F A+ + L + VG S+ + EL +RP
Sbjct: 158 IYALILTPTRELAFQIAEQFTALGKPITLKCSVIVGGRSLIHQARELSERP 208
Score = 84 (34.6 bits), Expect = 0.00036, Sum P(2) = 0.00036
Identities = 25/89 (28%), Positives = 43/89 (48%)
Query: 141 IADEISELIKRPKLEAGICYDPEDVL---QELQSAVDILVATPGRLMDHINA---TRGFT 194
IA++ + L K L+ + ++ +EL ++VATPGRL D I + T
Sbjct: 173 IAEQFTALGKPITLKCSVIVGGRSLIHQARELSERPHVVVATPGRLADLIESDPDTIAKV 232
Query: 195 LEHLCYLVVDETDRLLREAYQAWLPTVLQ 223
+ + + V+DE DR+L Y L + +
Sbjct: 233 FKKIQFFVLDEADRMLEGQYNDQLKPIFE 261
Score = 81 (33.6 bits), Expect = 1.0e-11, Sum P(2) = 1.0e-11
Identities = 24/89 (26%), Positives = 41/89 (46%)
Query: 270 MVLSATLTQDPNKLAQLDLHHPLFLTT-GETRYKLPERLESYKLICESKLKPLYLVALLQ 328
++LSAT+T + N L ++ P F G+ +RLE ++C +K YLV +++
Sbjct: 270 LLLSATITNNINMLHRVSTRKPYFFEDKGKDDESTVDRLEQKYVVCPVAVKDAYLVYVVK 329
Query: 329 SLGEEKCIVFTSSVESTHRLCTLLNHFGE 357
+ E+ T R C L + E
Sbjct: 330 NYSEKNPKSSVMIFAQTCRECQALAYMFE 358
>RGD|727929 [details] [associations]
symbol:Ddx24 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 24"
species:10116 "Rattus norvegicus" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA;ISO] [GO:0005737 "cytoplasm"
evidence=IEA;ISO] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 RGD:727929 GO:GO:0005524
GO:GO:0005737 GO:GO:0005730 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:CH473982 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 KO:K14805
CTD:57062 HOGENOM:HOG000290702 HOVERGEN:HBG104200 OMA:DQQEERR
GeneTree:ENSGT00550000074847 OrthoDB:EOG45TCMP EMBL:BC097262
EMBL:AY341876 IPI:IPI00200634 RefSeq:NP_954550.1 UniGene:Rn.100166
Ensembl:ENSRNOT00000012256 GeneID:373065 KEGG:rno:373065
UCSC:RGD:727929 InParanoid:Q6VEU8 NextBio:692388
Genevestigator:Q6VEU8 Uniprot:Q6VEU8
Length = 851
Score = 110 (43.8 bits), Expect = 1.1e-11, Sum P(4) = 1.1e-11
Identities = 52/182 (28%), Positives = 82/182 (45%)
Query: 174 DILVATPGRLMDHINATRGF--TLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNEN 231
+I++ATPGRL + I L L LV+DE DR++ + + A L +L++ N++
Sbjct: 433 EIVIATPGRLWELIKEKHPHLSNLRQLRCLVIDEADRMVEKDHFAELSQLLEML---NDS 489
Query: 232 RFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHP 291
+++ L F + T+ R K + KM +A L K+
Sbjct: 490 QYNPNRQTL--VFSATLTLVHQAPARILHKK---HVKKMDKTAKLDLLMQKIGMRGKPKV 544
Query: 292 LFLTTGETRYKLPERLESYKLICESKLKPLYLVA-LLQSLGEEKCIVFTSSVESTHRLCT 350
+ LT E E L K+ CE+ K LYL L+Q G + +VF +S+ RL
Sbjct: 545 IDLTRNEGTV---ETLTETKIHCETDEKDLYLYYFLMQYPG--RSLVFANSISCIKRLSG 599
Query: 351 LL 352
LL
Sbjct: 600 LL 601
Score = 81 (33.6 bits), Expect = 1.1e-11, Sum P(4) = 1.1e-11
Identities = 19/55 (34%), Positives = 31/55 (56%)
Query: 100 RCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKL 154
R L LV+ PTR+LA+QV+ A+A G++ + VG S + L + P++
Sbjct: 380 RPLLGLVLTPTRELAVQVRQHIDAVAKFTGINTAILVGGMSTQKQQRMLNRHPEI 434
Score = 79 (32.9 bits), Expect = 1.1e-11, Sum P(4) = 1.1e-11
Identities = 18/54 (33%), Positives = 34/54 (62%)
Query: 42 ALQNMGISSLFPVQVAVWQETIGPGLFER-DLCINSPTGSGKTLSYALPIVQTL 94
AL +G S+ P+Q T+ P + ++ D+ + TGSGKTL++A+P++ ++
Sbjct: 206 ALSFLGFSAPTPIQAL----TLAPAIRDKLDILGAAETGSGKTLAFAIPMIHSV 255
Score = 50 (22.7 bits), Expect = 1.1e-11, Sum P(4) = 1.1e-11
Identities = 10/33 (30%), Positives = 19/33 (57%)
Query: 5 KKKSMPVL-PWMRSPVDVSLFEDCPLDHLPCLD 36
++K + V+ W + +D +LF D +D L C +
Sbjct: 19 QRKGIKVVGKWKQVTIDPNLFADGQMDDLVCFE 51
>DICTYBASE|DDB_G0282741 [details] [associations]
symbol:ddx18 "DEAD/DEAH box helicase" species:44689
"Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0042254 "ribosome biogenesis"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0006364 "rRNA processing" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 dictyBase:DDB_G0282741 GO:GO:0005524
GO:GO:0005730 EMBL:AAFI02000047 GenomeReviews:CM000152_GR
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HSSP:Q58083 InterPro:IPR025313 Pfam:PF13959
RefSeq:XP_640236.1 ProteinModelPortal:Q54S03 STRING:Q54S03
EnsemblProtists:DDB0234194 GeneID:8623775 KEGG:ddi:DDB_G0282741
KO:K13179 OMA:KDGYRSY Uniprot:Q54S03
Length = 602
Score = 134 (52.2 bits), Expect = 1.2e-11, Sum P(2) = 1.2e-11
Identities = 25/67 (37%), Positives = 44/67 (65%)
Query: 157 GICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQA 216
G PE+ + L+ V++LVATPGRL+DH+ T+GF ++L L++DE DR+L ++
Sbjct: 228 GASKKPEE--ERLEKGVNLLVATPGRLLDHLQNTKGFITKNLKCLIIDEADRILEVGFEE 285
Query: 217 WLPTVLQ 223
+ +++
Sbjct: 286 EMHQIIK 292
Score = 131 (51.2 bits), Expect = 2.5e-11, Sum P(2) = 2.5e-11
Identities = 44/150 (29%), Positives = 75/150 (50%)
Query: 25 EDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTL 84
E +LP ++ K +++ MG + P+Q ++I P L +DL + TGSGKTL
Sbjct: 117 ESIEFSNLP-IEENTKKSIEEMGFKKMTPIQA----KSILPLLEGKDLLGAARTGSGKTL 171
Query: 85 SYALPIVQTL--SNRAVRCLRALVVL-PTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSI 141
++ +P ++ L SN R ++++ PTR+LALQ+ V + + G+ +G +S
Sbjct: 172 AFLIPAIEVLVKSNFKPRNGTGVIIISPTRELALQIYGVARELMKYHTQTHGIVIGGASK 231
Query: 142 ADEISELIKRPKLEAGICYDPEDVLQELQS 171
E L K L + P +L LQ+
Sbjct: 232 KPEEERLEKGVNL---LVATPGRLLDHLQN 258
Score = 101 (40.6 bits), Expect = 1.2e-11, Sum P(2) = 1.2e-11
Identities = 32/107 (29%), Positives = 55/107 (51%)
Query: 270 MVLSATLTQDPNKLAQLDLHH-PLFLTTGETR-YKLPERLESYKLICESKLKPLYLVALL 327
M+ SAT T+ + +A++ L++ P+++ + R E LE ++C S+ + L L L
Sbjct: 301 MLFSATQTRKVDDIAKVSLNNSPVYVGVDDEREISTVEGLEQGYVVCPSERRFLLLYTFL 360
Query: 328 QSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVR 374
+ +K IVF SS + LLN+ + I + E G Q+Q R
Sbjct: 361 KKNLSKKIIVFLSSCNAVKYTAELLNY---IDIPVLELHGRQKQQKR 404
>DICTYBASE|DDB_G0280147 [details] [associations]
symbol:ddx47 "DEAD/DEAH box helicase" species:44689
"Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0042254 "ribosome biogenesis"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0006364 "rRNA processing" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 dictyBase:DDB_G0280147 GO:GO:0005524
GO:GO:0005730 GenomeReviews:CM000152_GR GO:GO:0003723
EMBL:AAFI02000035 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HSSP:Q5STU4 KO:K14777 OMA:IFIPSKF
RefSeq:XP_641271.1 ProteinModelPortal:Q54VT4 SMR:Q54VT4
EnsemblProtists:DDB0234204 GeneID:8622403 KEGG:ddi:DDB_G0280147
Uniprot:Q54VT4
Length = 546
Score = 143 (55.4 bits), Expect = 1.2e-11, Sum P(2) = 1.2e-11
Identities = 45/155 (29%), Positives = 77/155 (49%)
Query: 16 RSPVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCIN 75
+S + +E+ + L + P++ A +G + P ++ +E+I L RD+
Sbjct: 108 KSEEEEKKYENVTFESLG-VHPQIIDACNKLGFNK--PKEIQ--RESIPWALKGRDIIGL 162
Query: 76 SPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLA 135
+ TGSGKT ++ +P++Q L A + L L + PTR+LA Q+ D F AI +G+ +
Sbjct: 163 AQTGSGKTAAFVIPVLQKLLE-APQGLFCLALAPTRELAYQIADQFNAIGSTIGVKTCVL 221
Query: 136 VGQSSIADEISELIKRPKLEAGICYDPEDVLQELQ 170
VG + L K+P + G P VL L+
Sbjct: 222 VGGIDSMSQSLALAKKPHVVVG---SPGRVLHHLE 253
Score = 117 (46.2 bits), Expect = 9.6e-09, Sum P(2) = 9.6e-09
Identities = 38/138 (27%), Positives = 65/138 (47%)
Query: 104 ALVVLPTRDLALQV-KDVFA-AIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYD 161
A V+P L+ + +F A+AP L+ +A ++I I +K L GI D
Sbjct: 171 AAFVIPVLQKLLEAPQGLFCLALAPTRELAYQIADQFNAIGSTIG--VKTCVLVGGI--D 226
Query: 162 PEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTV 221
L ++V +PGR++ H+ T+GF L + Y ++DE DRL ++ + +
Sbjct: 227 SMSQSLALAKKPHVVVGSPGRVLHHLEHTKGFNLRSIKYFIMDEADRLFSADFEEEVNNI 286
Query: 222 LQ-LTRSDNENRFSDAST 238
L+ + + N FS T
Sbjct: 287 LKVIPKERNTYLFSATMT 304
Score = 90 (36.7 bits), Expect = 1.2e-11, Sum P(2) = 1.2e-11
Identities = 24/86 (27%), Positives = 42/86 (48%)
Query: 271 VLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSL 330
+ SAT+T KL + L +P+ + ++Y+ + L L K K YL +L L
Sbjct: 298 LFSATMTSKVAKLQRASLVNPVKVQVA-SKYQTVDTLLQQYLFVPFKYKDCYLAYILNEL 356
Query: 331 GEEKCIVFTSSVESTHRLCTLLNHFG 356
I+FTS+ S+ ++ +L + G
Sbjct: 357 AGNLTIIFTSTCASSTKIAMMLRNLG 382
Score = 43 (20.2 bits), Expect = 8.1e-07, Sum P(2) = 8.1e-07
Identities = 7/19 (36%), Positives = 11/19 (57%)
Query: 332 EEKCIVFTSSVESTHRLCT 350
EE ++F V+ HR+ T
Sbjct: 488 EETVLIFLERVQEAHRIAT 506
>ZFIN|ZDB-GENE-071022-2 [details] [associations]
symbol:ddx10 "DEAD (Asp-Glu-Ala-Asp) box polypeptide
10" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
ZFIN:ZDB-GENE-071022-2 GO:GO:0005524 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
GeneTree:ENSGT00550000074980 EMBL:CR450711 IPI:IPI00898518
Ensembl:ENSDART00000125785 ArrayExpress:F1QMM9 Bgee:F1QMM9
Uniprot:F1QMM9
Length = 875
Score = 147 (56.8 bits), Expect = 1.2e-11, Sum P(2) = 1.2e-11
Identities = 44/136 (32%), Positives = 71/136 (52%)
Query: 37 PRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSN 96
P K L+ + + + + + ++TIG L RD+ + TGSGKTL++ +P+++ L
Sbjct: 76 PLSKKTLKGL-LEAQYRQPTEIQRQTIGFALQGRDVLGAAKTGSGKTLAFLIPVLECLYR 134
Query: 97 R---AVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPK 153
A+ L AL++ PTR+LA Q +V + S GL +G + DE SE I R
Sbjct: 135 EQWTAMDGLGALIISPTRELAYQTFEVLRKVGKNHEFSAGLVIGGKDLKDE-SEKIHRTN 193
Query: 154 LEAGICYDPEDVLQEL 169
+ IC P +LQ +
Sbjct: 194 II--IC-TPGRLLQHM 206
Score = 106 (42.4 bits), Expect = 4.0e-07, Sum P(2) = 4.0e-07
Identities = 28/92 (30%), Positives = 46/92 (50%)
Query: 150 KRPKLEAGICYDPEDVLQELQSA--VDILVATPGRLMDHINATRGFTLEHLCYLVVDETD 207
K + AG+ +D+ E + +I++ TPGRL+ H++ T F L LV+DE D
Sbjct: 167 KNHEFSAGLVIGGKDLKDESEKIHRTNIIICTPGRLLQHMDETATFHASDLHMLVLDEAD 226
Query: 208 RLLREAYQAWLPTVLQ-LTRSDNENRFSDAST 238
R+L + L +++ L +S FS T
Sbjct: 227 RILDMGFADTLNAIVENLPKSRQTLLFSATQT 258
Score = 91 (37.1 bits), Expect = 1.2e-11, Sum P(2) = 1.2e-11
Identities = 32/108 (29%), Positives = 51/108 (47%)
Query: 270 MVLSATLTQDPNKLAQLDLHHPLFLTTGE-TRYKLPERLESYKLICESKLKPLYLVALLQ 328
++ SAT T+ LA+L L P ++ E ++ P LE ++CE K L + L+
Sbjct: 251 LLFSATQTRSVKDLARLSLKDPEYVWVHEQAKFSTPATLEQNYVVCELHQKVNMLYSFLR 310
Query: 329 SLGEEKCIVFTSSVESTHRLCTLLNHFGELR--IKIKEYSGLQRQSVR 374
S ++K IVF + + L + F LR I + G Q+Q R
Sbjct: 311 SHLQKKIIVFFACCKEVQYLFRI---FCRLRPGISVLALHGKQQQMKR 355
>ZFIN|ZDB-GENE-031113-10 [details] [associations]
symbol:ddx21 "DEAD (Asp-Glu-Ala-Asp) box polypeptide
21" species:7955 "Danio rerio" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012562 InterPro:IPR017956 Pfam:PF00270 Pfam:PF00271
Pfam:PF08152 PROSITE:PS51194 SMART:SM00384 SMART:SM00490
ZFIN:ZDB-GENE-031113-10 GO:GO:0005524 GO:GO:0005634 GO:GO:0003677
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 CTD:9188 HOVERGEN:HBG051331
OrthoDB:EOG46143T EMBL:BC160629 IPI:IPI00611974
RefSeq:NP_001120807.1 UniGene:Dr.104447 ProteinModelPortal:B1H1J4
STRING:B1H1J4 GeneID:799650 KEGG:dre:799650 NextBio:20933916
Uniprot:B1H1J4
Length = 759
Score = 128 (50.1 bits), Expect = 1.5e-11, Sum P(2) = 1.5e-11
Identities = 42/119 (35%), Positives = 61/119 (51%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
+ P LQ G+S LF +QV + + G +DL + TG+GKT S+A+P+V+ L
Sbjct: 173 ISPNTIKLLQARGVSYLFDIQVKTFN-AVYDG---KDLIGQARTGTGKTFSFAVPLVEKL 228
Query: 95 SN-----RAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISEL 148
+ R R + LV+ PTR+LA+QV F I LSV G SS +I +
Sbjct: 229 QSGDQERRRGRPPKVLVLAPTRELAIQVTKDFKDITRK--LSVTCFYGGSSYNPQIDAI 285
Score = 109 (43.4 bits), Expect = 1.5e-11, Sum P(2) = 1.5e-11
Identities = 23/77 (29%), Positives = 44/77 (57%)
Query: 157 GICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQA 216
G Y+P+ + ++S +D+LV TPGR+ DH+ + L L ++V+DE D++L +
Sbjct: 275 GSSYNPQ--IDAIRSGIDVLVGTPGRIRDHLQNNK-LDLSQLQHVVLDEVDQMLDMGFAE 331
Query: 217 WLPTVLQLT-RSDNENR 232
+ +L + + D E +
Sbjct: 332 QVEEILSASYKKDAEQK 348
>MGI|MGI:1351337 [details] [associations]
symbol:Ddx24 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 24"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 MGI:MGI:1351337
GO:GO:0005524 GO:GO:0003723 EMBL:CH466549 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 KO:K14805 CTD:57062
HOGENOM:HOG000290702 HOVERGEN:HBG104200 EMBL:AF214732 EMBL:BC055048
EMBL:BC055317 EMBL:U46690 IPI:IPI00380228 RefSeq:NP_001152974.1
RefSeq:NP_065240.2 UniGene:Mm.3935 UniGene:Mm.475067
ProteinModelPortal:Q9ESV0 SMR:Q9ESV0 PhosphoSite:Q9ESV0
PaxDb:Q9ESV0 PRIDE:Q9ESV0 Ensembl:ENSMUST00000044923 GeneID:27225
KEGG:mmu:27225 GeneTree:ENSGT00550000074847 InParanoid:Q7TM97
OrthoDB:EOG45TCMP NextBio:305144 Bgee:Q9ESV0 CleanEx:MM_DDX24
Genevestigator:Q9ESV0 GermOnline:ENSMUSG00000041645 Uniprot:Q9ESV0
Length = 857
Score = 109 (43.4 bits), Expect = 1.5e-11, Sum P(4) = 1.5e-11
Identities = 50/182 (27%), Positives = 82/182 (45%)
Query: 174 DILVATPGRLMDHINATRGF--TLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNEN 231
+I++ATPGRL + + L L LV+DE DR++ + + A L +L++ N++
Sbjct: 439 EIVIATPGRLWELVKEKHPHLSNLRQLRCLVIDEADRMVEKGHFAELSQLLEML---NDS 495
Query: 232 RFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHP 291
+++ + L F + T+ R K ++ K L Q K+
Sbjct: 496 QYNPSRQTL--VFSATLTLVHQAPARILHKKHVKKMDKTDKLDLLMQ---KVGMRGKPKV 550
Query: 292 LFLTTGETRYKLPERLESYKLICESKLKPLYLVA-LLQSLGEEKCIVFTSSVESTHRLCT 350
+ LT E E L K+ CE+ K LYL L+Q G + +VF +S+ RL
Sbjct: 551 IDLTRNEGTV---ETLTETKIHCETDEKDLYLYYFLMQYPG--RSLVFANSISCIKRLSG 605
Query: 351 LL 352
LL
Sbjct: 606 LL 607
Score = 82 (33.9 bits), Expect = 1.5e-11, Sum P(4) = 1.5e-11
Identities = 19/55 (34%), Positives = 31/55 (56%)
Query: 100 RCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKL 154
R L LV+ PTR+LA+QV+ A+A G++ + VG S + L + P++
Sbjct: 386 RPLLGLVLTPTRELAIQVRQHIDAVAKFTGINTAILVGGMSTQKQQRMLNRHPEI 440
Score = 79 (32.9 bits), Expect = 1.5e-11, Sum P(4) = 1.5e-11
Identities = 18/54 (33%), Positives = 34/54 (62%)
Query: 42 ALQNMGISSLFPVQVAVWQETIGPGLFER-DLCINSPTGSGKTLSYALPIVQTL 94
AL +G S+ P+Q T+ P + ++ D+ + TGSGKTL++A+P++ ++
Sbjct: 207 ALSFLGFSAPTPIQAL----TLAPAIRDKLDILGAAETGSGKTLAFAIPMIHSV 256
Score = 49 (22.3 bits), Expect = 1.5e-11, Sum P(4) = 1.5e-11
Identities = 9/33 (27%), Positives = 19/33 (57%)
Query: 5 KKKSMPVL-PWMRSPVDVSLFEDCPLDHLPCLD 36
++K + ++ W + +D +LF D +D L C +
Sbjct: 19 QRKGIKIVGKWKQVTIDPNLFADGQMDDLVCFE 51
>UNIPROTKB|Q9NUL7 [details] [associations]
symbol:DDX28 "Probable ATP-dependent RNA helicase DDX28"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=IDA] [GO:0042645 "mitochondrial nucleoid" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005730 GO:GO:0003723 GO:GO:0042645 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 EMBL:AF329821 EMBL:AK002144
EMBL:AC130462 EMBL:BC024273 IPI:IPI00020050 RefSeq:NP_060850.2
UniGene:Hs.458313 ProteinModelPortal:Q9NUL7 SMR:Q9NUL7
IntAct:Q9NUL7 PhosphoSite:Q9NUL7 DMDM:296434476 PaxDb:Q9NUL7
PRIDE:Q9NUL7 Ensembl:ENST00000332395 GeneID:55794 KEGG:hsa:55794
UCSC:uc002evh.2 CTD:55794 GeneCards:GC16M068055 HGNC:HGNC:17330
HPA:HPA041911 MIM:607618 neXtProt:NX_Q9NUL7 PharmGKB:PA27214
HOGENOM:HOG000008689 HOVERGEN:HBG081424 InParanoid:Q9NUL7
OMA:RARRDHF OrthoDB:EOG42RD7H PhylomeDB:Q9NUL7 GenomeRNAi:55794
NextBio:60915 Bgee:Q9NUL7 CleanEx:HS_DDX28 Genevestigator:Q9NUL7
GermOnline:ENSG00000182810 Uniprot:Q9NUL7
Length = 540
Score = 185 (70.2 bits), Expect = 2.0e-11, P = 2.0e-11
Identities = 67/196 (34%), Positives = 101/196 (51%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFE-RDLCINSPTGSGKTLSYALPIVQ- 92
L+PR+ ALQ + P V TI P L R + + TGSGKTLSY LP++Q
Sbjct: 133 LEPRVLHALQEAAPEVVQPTTVQ--SSTI-PSLLRGRHVVCAAETGSGKTLSYLLPLLQR 189
Query: 93 -----TLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISE 147
+L + + R LV++P+R+LA QV+ A+A +G S+GL V E
Sbjct: 190 LLGQPSLDSLPIPAPRGLVLVPSRELAQQVR----AVAQPLGRSLGLLVRDL----EGGH 241
Query: 148 LIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETD 207
++R +L+ Q + D+LVATPG L + + R +LE L +LV+DE D
Sbjct: 242 GMRRIRLQLS-----------RQPSADVLVATPGALWKALKS-RLISLEQLSFLVLDEAD 289
Query: 208 RLLREAYQAWLPTVLQ 223
LL E++ + +L+
Sbjct: 290 TLLDESFLELVDYILE 305
>RGD|1304895 [details] [associations]
symbol:Ddx31 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 31"
species:10116 "Rattus norvegicus" [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 RGD:1304895
GO:GO:0005524 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
InterPro:IPR025313 Pfam:PF13959 GeneTree:ENSGT00550000075041
EMBL:CH474001 UniGene:Rn.63648 Ensembl:ENSRNOT00000064323
Uniprot:G3V9V8
Length = 682
Score = 165 (63.1 bits), Expect = 2.2e-11, Sum P(2) = 2.2e-11
Identities = 55/181 (30%), Positives = 93/181 (51%)
Query: 57 AVWQETIGPGLFE-RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLAL 115
+V +++I P L E RD + S TGSGKTL+Y +P+VQ+L + L + + AL
Sbjct: 129 SVQKQSI-PVLLEGRDALVRSQTGSGKTLAYCIPVVQSL-----QALTSKIQRSDGPYAL 182
Query: 116 QVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKR-PKLEAGICYDPEDVLQE---LQS 171
+ P L++ QS D + +L+K + G+ E E L+
Sbjct: 183 -------VLVPTRELAL-----QSF--DTVQKLLKPFTWIVPGVLMGGEKRKSEKARLRK 228
Query: 172 AVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNEN 231
++IL++TPGRL+DHI +T+ + +LVVDE DR+L ++ + +L ++ +
Sbjct: 229 GINILISTPGRLVDHIKSTKNIHFNRVRWLVVDEADRILDLGFEKDVTVILNAVNAECQK 288
Query: 232 R 232
R
Sbjct: 289 R 289
Score = 66 (28.3 bits), Expect = 2.2e-11, Sum P(2) = 2.2e-11
Identities = 20/74 (27%), Positives = 38/74 (51%)
Query: 270 MVLSATLTQDPNKLAQLDLHHPLFLTTGETR----------------YKLPERLESYKLI 313
++LSATLT+ +LA + LH+P+ ++ + + +PE L+ Y ++
Sbjct: 292 VLLSATLTEGVTRLADISLHNPVSISVLDKSWDQPNPKEVASIQLDSFAIPESLDQYVVL 351
Query: 314 CESKLKPLYLVALL 327
SKL+ + L A +
Sbjct: 352 VPSKLRLVCLAAFI 365
>CGD|CAL0000625 [details] [associations]
symbol:SPB4 species:5476 "Candida albicans" [GO:0030686 "90S
preribosome" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0000027 "ribosomal large subunit assembly" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005730 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313
Pfam:PF13959 KO:K14809 EMBL:AACQ01000202 EMBL:AACQ01000200
RefSeq:XP_711358.1 RefSeq:XP_711406.1 ProteinModelPortal:Q59NP8
STRING:Q59NP8 GeneID:3647008 GeneID:3647042 KEGG:cal:CaO19.11631
KEGG:cal:CaO19.4154 CGD:CAL0005749 Uniprot:Q59NP8
Length = 631
Score = 174 (66.3 bits), Expect = 2.3e-11, Sum P(2) = 2.3e-11
Identities = 61/240 (25%), Positives = 115/240 (47%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
L P +K A+ +MG ++ PVQ + G +D+ + + TGSGKTLS+ +P++Q +
Sbjct: 17 LHPWIKEAISSMGYPTMTPVQASTIPLLSG----NKDVVVEAVTGSGKTLSFVIPVLQKI 72
Query: 95 SNRAVRC--------------LRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSS 140
S+R + + ++V+ PTR+LA Q++ VF + + G +
Sbjct: 73 SDRLYKPDSDGDLPEPVKRGHMLSIVLSPTRELANQIQSVFNQVLQYLPEDKGTRINTQL 132
Query: 141 IADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCY 200
+ I + ED+ Q L + IL+ TPGR+++ + +++ L
Sbjct: 133 LVGSIGNV-------------REDLNQFLTNQPQILIGTPGRILEFLGSSQSIKTSSLEI 179
Query: 201 LVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFK 260
+++DE D+LL +++ + +L+ + + R S + SA G+ TI R G+ K
Sbjct: 180 VILDEADKLLDFSFEKDVINILK--KLPKQRRTGLFSATISSA-GN--TIFRTGMNNPVK 234
Score = 55 (24.4 bits), Expect = 2.3e-11, Sum P(2) = 2.3e-11
Identities = 23/98 (23%), Positives = 46/98 (46%)
Query: 271 VLSATLTQDPNKLAQLDLHHPLFLTTGETRY-----KLPERLE-SYKLICESKLKPLYLV 324
+ SAT++ N + + +++P+ + Y P+ L+ SY +I +LK L+
Sbjct: 212 LFSATISSAGNTIFRTGMNNPVKVQVKSKNYFGEQSNSPKSLQLSYMMI-NPELKITTLL 270
Query: 325 ALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKI 362
+L +K IV+ + CT + HF ++ K+
Sbjct: 271 TILSKYQYKKAIVYFPT-------CTSVKHFYQIFNKV 301
>CGD|CAL0003050 [details] [associations]
symbol:HAS1 species:5476 "Candida albicans" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=IGI;ISS] [GO:0042274
"ribosomal small subunit biogenesis" evidence=IGI;ISS] [GO:0030686
"90S preribosome" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0005635 "nuclear envelope" evidence=IEA]
[GO:0030687 "preribosome, large subunit precursor" evidence=IEA]
[GO:0006364 "rRNA processing" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 CGD:CAL0003050 GO:GO:0005524
GO:GO:0005730 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006364 GO:GO:0004004 GO:GO:0042274
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 EMBL:AACQ01000012
InterPro:IPR025313 Pfam:PF13959 KO:K13179 EMBL:AACQ01000011
RefSeq:XP_721871.1 RefSeq:XP_722031.1 STRING:Q5AK59 GeneID:3636361
GeneID:3636443 KEGG:cal:CaO19.11444 KEGG:cal:CaO19.3962
Uniprot:Q5AK59
Length = 565
Score = 136 (52.9 bits), Expect = 2.4e-11, Sum P(2) = 2.4e-11
Identities = 37/129 (28%), Positives = 68/129 (52%)
Query: 25 EDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTL 84
ED ++ +P +K A++ MG + + VQ +TI P L RD+ + TGSGKTL
Sbjct: 106 EDVLFENADFSEPTMK-AIKEMGFTKMTKVQA----KTIPPLLAGRDVLGAAKTGSGKTL 160
Query: 85 SYALPIVQTLSNRAVRCLRA---LVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSI 141
++ +P ++ L + ++ +++ PTR+LALQ+ V + + G+ +G +
Sbjct: 161 AFLIPAIELLYSLKIKPRNGTAVIIITPTRELALQIFGVARELMQFHSQTCGIVIGGADR 220
Query: 142 ADEISELIK 150
E ++L K
Sbjct: 221 RQEATKLAK 229
Score = 127 (49.8 bits), Expect = 2.4e-10, Sum P(2) = 2.4e-10
Identities = 40/118 (33%), Positives = 61/118 (51%)
Query: 124 IAPAVGLSVGLAVGQSSIADEI----SELIKRPKLEAGICYDPEDVLQE---LQSAVDIL 176
I P G +V + +A +I EL++ GI D QE L V++L
Sbjct: 175 IKPRNGTAVIIITPTRELALQIFGVARELMQFHSQTCGIVIGGADRRQEATKLAKGVNLL 234
Query: 177 VATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFS 234
VATPGRL+DH+ T+ F +L LV+DE DR+L ++ + ++++ NENR S
Sbjct: 235 VATPGRLLDHLKNTQ-FVFSNLKALVIDEADRILEIGFEDEMKQIIKVL--PNENRQS 289
Score = 95 (38.5 bits), Expect = 2.4e-11, Sum P(2) = 2.4e-11
Identities = 32/107 (29%), Positives = 52/107 (48%)
Query: 270 MVLSATLTQDPNKLAQLDLHH-PLFLTT-GETRYKLPERLESYKLICESKLKPLYLVALL 327
M+ SAT T LA++ L PL++ E + LE ++C+S + L L + L
Sbjct: 290 MLFSATQTTKVEDLARISLRPGPLYINVVPEKDVSTADGLEQGYVVCDSDKRFLLLFSFL 349
Query: 328 QSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVR 374
+ ++K IVF SS S LLN+ + + + + G Q+Q R
Sbjct: 350 KRNVKKKIIVFLSSCNSVKFYSELLNY---IDLPVLDLHGKQKQQKR 393
>UNIPROTKB|Q5AK59 [details] [associations]
symbol:HAS1 "ATP-dependent RNA helicase HAS1"
species:237561 "Candida albicans SC5314" [GO:0004004 "ATP-dependent
RNA helicase activity" evidence=IGI] [GO:0042274 "ribosomal small
subunit biogenesis" evidence=IGI] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 CGD:CAL0003050
GO:GO:0005524 GO:GO:0005730 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0004004
GO:GO:0042274 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
EMBL:AACQ01000012 InterPro:IPR025313 Pfam:PF13959 KO:K13179
EMBL:AACQ01000011 RefSeq:XP_721871.1 RefSeq:XP_722031.1
STRING:Q5AK59 GeneID:3636361 GeneID:3636443 KEGG:cal:CaO19.11444
KEGG:cal:CaO19.3962 Uniprot:Q5AK59
Length = 565
Score = 136 (52.9 bits), Expect = 2.4e-11, Sum P(2) = 2.4e-11
Identities = 37/129 (28%), Positives = 68/129 (52%)
Query: 25 EDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTL 84
ED ++ +P +K A++ MG + + VQ +TI P L RD+ + TGSGKTL
Sbjct: 106 EDVLFENADFSEPTMK-AIKEMGFTKMTKVQA----KTIPPLLAGRDVLGAAKTGSGKTL 160
Query: 85 SYALPIVQTLSNRAVRCLRA---LVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSI 141
++ +P ++ L + ++ +++ PTR+LALQ+ V + + G+ +G +
Sbjct: 161 AFLIPAIELLYSLKIKPRNGTAVIIITPTRELALQIFGVARELMQFHSQTCGIVIGGADR 220
Query: 142 ADEISELIK 150
E ++L K
Sbjct: 221 RQEATKLAK 229
Score = 127 (49.8 bits), Expect = 2.4e-10, Sum P(2) = 2.4e-10
Identities = 40/118 (33%), Positives = 61/118 (51%)
Query: 124 IAPAVGLSVGLAVGQSSIADEI----SELIKRPKLEAGICYDPEDVLQE---LQSAVDIL 176
I P G +V + +A +I EL++ GI D QE L V++L
Sbjct: 175 IKPRNGTAVIIITPTRELALQIFGVARELMQFHSQTCGIVIGGADRRQEATKLAKGVNLL 234
Query: 177 VATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFS 234
VATPGRL+DH+ T+ F +L LV+DE DR+L ++ + ++++ NENR S
Sbjct: 235 VATPGRLLDHLKNTQ-FVFSNLKALVIDEADRILEIGFEDEMKQIIKVL--PNENRQS 289
Score = 95 (38.5 bits), Expect = 2.4e-11, Sum P(2) = 2.4e-11
Identities = 32/107 (29%), Positives = 52/107 (48%)
Query: 270 MVLSATLTQDPNKLAQLDLHH-PLFLTT-GETRYKLPERLESYKLICESKLKPLYLVALL 327
M+ SAT T LA++ L PL++ E + LE ++C+S + L L + L
Sbjct: 290 MLFSATQTTKVEDLARISLRPGPLYINVVPEKDVSTADGLEQGYVVCDSDKRFLLLFSFL 349
Query: 328 QSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVR 374
+ ++K IVF SS S LLN+ + + + + G Q+Q R
Sbjct: 350 KRNVKKKIIVFLSSCNSVKFYSELLNY---IDLPVLDLHGKQKQQKR 393
>UNIPROTKB|Q0C354 [details] [associations]
symbol:rhlE "ATP-dependent RNA helicase RhlE"
species:228405 "Hyphomonas neptunium ATCC 15444" [GO:0006139
"nucleobase-containing compound metabolic process" evidence=ISS]
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 EMBL:CP000158
GenomeReviews:CP000158_GR GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807 KO:K11927
RefSeq:YP_759839.1 ProteinModelPortal:Q0C354 STRING:Q0C354
GeneID:4290097 KEGG:hne:HNE_1118 PATRIC:32215041 OMA:KHGSEKL
BioCyc:HNEP228405:GI69-1155-MONOMER Uniprot:Q0C354
Length = 464
Score = 134 (52.2 bits), Expect = 2.8e-11, Sum P(2) = 2.8e-11
Identities = 39/118 (33%), Positives = 61/118 (51%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
L R+ +L G ++ P+Q ++ I + RD+ + TG+GKTL++A PI+ L
Sbjct: 14 LTGRILTSLTKAGYTAPTPIQ----EQAIPLVIQGRDIVGLAQTGTGKTLAFAAPILDRL 69
Query: 95 SNRA----VRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISEL 148
S A VR R LV+ PTR+LA Q+ F + L V + G + I +I +L
Sbjct: 70 SRNASPAPVRGTRVLVLAPTRELAGQIATSFGTYGAGLNLRVVMVCGGAKIGGQIRQL 127
Score = 94 (38.1 bits), Expect = 2.8e-11, Sum P(2) = 2.8e-11
Identities = 26/82 (31%), Positives = 45/82 (54%)
Query: 166 LQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLT 225
+++L+ ILVATPGRL+D + R +L+ + L++DE D++L + L + +
Sbjct: 124 IRQLERGAHILVATPGRLID-LMEQRAVSLDKVETLILDEADQMLDLGFIHALRAIAKNV 182
Query: 226 RSDNENRFSDASTFLPSAFGSL 247
S + F A+ +P A SL
Sbjct: 183 PSKRQTLFFSAT--MPKAVESL 202
>UNIPROTKB|E7EX41 [details] [associations]
symbol:DDX55 "ATP-dependent RNA helicase DDX55"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR011545 Pfam:PF00270 PROSITE:PS00039
GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
EMBL:AC055713 EMBL:AC117503 HGNC:HGNC:20085 ChiTaRS:DDX55
IPI:IPI01018972 ProteinModelPortal:E7EX41 SMR:E7EX41
Ensembl:ENST00000354291 ArrayExpress:E7EX41 Bgee:E7EX41
Uniprot:E7EX41
Length = 191
Score = 161 (61.7 bits), Expect = 3.0e-11, P = 3.0e-11
Identities = 61/197 (30%), Positives = 95/197 (48%)
Query: 30 DHLPC-LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYAL 88
+ LP L P++ AL+ +G + PVQ A TI + +D+ + TGSGKTL++ +
Sbjct: 10 ESLPVPLHPQVLGALRELGFPYMTPVQSA----TIPLFMRNKDVAAEAVTGSGKTLAFVI 65
Query: 89 PIVQTLSNRAVRCLR----ALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADE 144
PI++ L R + + A+++ PTR+LA+Q+ +V + E
Sbjct: 66 PILEILLRREEKLKKSQVGAIIITPTRELAIQIDEVLSHFTKHF--------------PE 111
Query: 145 ISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINA-TRGFTL----EHLC 199
S+++ G EDV + Q +I+VATPGRL D G L L
Sbjct: 112 FSQILWIGGRNPG-----EDVERFKQQGGNIIVATPGRLEDMFRRKAEGLDLASCVRSLD 166
Query: 200 YLVVDETDRLLREAYQA 216
LV+DE DRLL ++A
Sbjct: 167 VLVLDEADRLLDMGFEA 183
>UNIPROTKB|F8WDT8 [details] [associations]
symbol:DDX56 "Probable ATP-dependent RNA helicase DDX56"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] InterPro:IPR011545
Pfam:PF00270 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 EMBL:AC004938 HGNC:HGNC:18193 IPI:IPI00925990
ProteinModelPortal:F8WDT8 SMR:F8WDT8 Ensembl:ENST00000446987
ArrayExpress:F8WDT8 Bgee:F8WDT8 Uniprot:F8WDT8
Length = 185
Score = 161 (61.7 bits), Expect = 3.0e-11, P = 3.0e-11
Identities = 59/199 (29%), Positives = 97/199 (48%)
Query: 30 DHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALP 89
+H+ LDPRL A+ ++G S +Q ++ I L +DL + TGSGKT +YA+P
Sbjct: 10 EHMG-LDPRLLQAVTDLGWSRPTLIQ----EKAIPLALEGKDLLARARTGSGKTAAYAIP 64
Query: 90 IVQTLSNRAV------RCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIAD 143
++Q L +R + +R LV++PT++LA Q + + +A V +A S+ D
Sbjct: 65 MLQLLLHRKATGPVVEQAVRGLVLVPTKELARQAQSMIQQLATYCARDVRVA-NVSAAED 123
Query: 144 EISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVV 203
+S+ VL E D++V TP R++ H+ + L LVV
Sbjct: 124 SVSQ---------------RAVLMEKP---DVVVGTPSRILSHLQQDSLKLRDSLELLVV 165
Query: 204 DETDRLLREAYQAWLPTVL 222
DE D L ++ L ++L
Sbjct: 166 DEADLLFSFGFEEELKSLL 184
>UNIPROTKB|I3LJA0 [details] [associations]
symbol:DDX52 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00550000074863 OMA:NVMKQSG
EMBL:FP565631 EMBL:FP312903 Ensembl:ENSSSCT00000024730
Uniprot:I3LJA0
Length = 507
Score = 145 (56.1 bits), Expect = 3.0e-11, Sum P(3) = 3.0e-11
Identities = 36/118 (30%), Positives = 65/118 (55%)
Query: 28 PLDHLPCLDPRLKVA---LQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTL 84
P+ LD K++ LQN+ + + F + + + I L R+L ++PTGSGKTL
Sbjct: 67 PITTFQQLDQEYKISSRLLQNI-LDAGFQLPTPIQMQAIPVMLHGRELLASAPTGSGKTL 125
Query: 85 SYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIA 142
++++PI+ L + RALV+ PTR+LA Q+ I+ G + + + ++++A
Sbjct: 126 AFSIPILMQLKQPTNKGFRALVISPTRELASQIHRELVKISEGTGFRIHM-IHKAAVA 182
Score = 69 (29.3 bits), Expect = 3.0e-11, Sum P(3) = 3.0e-11
Identities = 22/70 (31%), Positives = 35/70 (50%)
Query: 174 DILVATPGRLMDHINATR-GFTLEHLCYLVVDETDRLLREA---YQAWLPTVLQLTRSDN 229
DILV TP RL+ + G L + +LVVDE+D+L + ++ L ++ S
Sbjct: 195 DILVTTPNRLIYLLKQDPPGIDLTSVEWLVVDESDKLFEDGKTGFRDQLASIFLACTSHK 254
Query: 230 ENRFSDASTF 239
R ++TF
Sbjct: 255 VKRAMFSATF 264
Score = 51 (23.0 bits), Expect = 3.0e-11, Sum P(3) = 3.0e-11
Identities = 20/84 (23%), Positives = 36/84 (42%)
Query: 266 RLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVA 325
++ + + SAT D + +L+L + + ++ G R E +E L S+ L +
Sbjct: 254 KVKRAMFSATFAYDVEQWCKLNLDNVITVSIG-ARNSAVETVEQELLFVGSETGKLLAMR 312
Query: 326 LLQSLG-EEKCIVFTSSVESTHRL 348
L G +VF S+E L
Sbjct: 313 ELVKKGFNPPVLVFVQSIERAKEL 336
Score = 39 (18.8 bits), Expect = 9.9e-07, Sum P(2) = 9.9e-07
Identities = 8/31 (25%), Positives = 16/31 (51%)
Query: 138 QSSIADEISELIKRPKLEAGICYDPEDVLQE 168
Q ++ + +IK+P IC P+ L++
Sbjct: 454 QKLLSKQKKRMIKKPLERESICTTPKYFLEK 484
>DICTYBASE|DDB_G0280407 [details] [associations]
symbol:ddx56 "DEAD/DEAH box helicase" species:44689
"Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0006364 "rRNA processing"
evidence=IEA;ISS] [GO:0005730 "nucleolus" evidence=IEA;ISS]
[GO:0000027 "ribosomal large subunit assembly" evidence=ISS]
[GO:0042254 "ribosome biogenesis" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 dictyBase:DDB_G0280407 GO:GO:0005524 GO:GO:0005730
GenomeReviews:CM000152_GR GO:GO:0003723 EMBL:AAFI02000036
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0000027 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K14810 HSSP:P10081 RefSeq:XP_641158.1
STRING:Q54VF1 EnsemblProtists:DDB0234216 GeneID:8622538
KEGG:ddi:DDB_G0280407 OMA:CARETEM ProtClustDB:CLSZ2730700
Uniprot:Q54VF1
Length = 685
Score = 148 (57.2 bits), Expect = 3.2e-11, Sum P(2) = 3.2e-11
Identities = 55/196 (28%), Positives = 97/196 (49%)
Query: 26 DCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLS 85
+C + + LD R+ AL+ MG + VQ ++I L +D+ + TGSGKT +
Sbjct: 22 ECTFESMG-LDNRILRALKKMGFQNPSLVQ----SKSIPLSLQGKDILAKARTGSGKTAA 76
Query: 86 YALPIVQTL----SNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLA-VGQSS 140
Y++PI+Q + ++ ++A+V++PTR+L QVK+ F ++ V + +G
Sbjct: 77 YSIPIIQKVLMAKEKSNIKGVKAVVLVPTRELCEQVKNHFNQVSYYCQQLVSVVQLGNDK 136
Query: 141 IADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEH-LC 199
DE + G+ L+ D++V+TP RL+ H+ + L+ L
Sbjct: 137 TLDE----------QKGL----------LRDIPDVIVSTPTRLVQHLE-NKTIQLQSTLD 175
Query: 200 YLVVDETDRLLREAYQ 215
LV+DE D +L +Q
Sbjct: 176 ILVIDEADLVLNYGHQ 191
Score = 83 (34.3 bits), Expect = 3.2e-11, Sum P(2) = 3.2e-11
Identities = 25/93 (26%), Positives = 46/93 (49%)
Query: 265 PRLVK-MVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYL 323
P++ + ++SATLT++ +L +L LH P L E + + L Y + C K L +
Sbjct: 202 PKVCQCFLMSATLTKEVEELKKLVLHTPAVLKLEEDK-AIQTNLSEYSIKCAEVDKFLLV 260
Query: 324 VALLQ-SLGEEKCIVFTSSVESTHRLCTLLNHF 355
+LL+ L + K + F + + ++L F
Sbjct: 261 FSLLRLRLMQGKILFFVNDTNNCYKLKLFFERF 293
>UNIPROTKB|I3LB32 [details] [associations]
symbol:DDX28 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0042645 "mitochondrial nucleoid" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0003676 GO:GO:0042645 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
OMA:RARRDHF GeneTree:ENSGT00670000098028 EMBL:FP565347
RefSeq:XP_003355824.1 Ensembl:ENSSSCT00000027762 GeneID:100621490
KEGG:ssc:100621490 Uniprot:I3LB32
Length = 540
Score = 183 (69.5 bits), Expect = 3.3e-11, P = 3.3e-11
Identities = 65/195 (33%), Positives = 100/195 (51%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQ-- 92
L+PR+ ALQ + P V TI P L R + + TGSGKTL Y LP++Q
Sbjct: 133 LEPRVLSALQEAAPEVVRPTTVQ--SSTIPPLLGGRHILCAAETGSGKTLGYMLPLLQRL 190
Query: 93 ----TLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISEL 148
+L + + R LV++P+R+LA QV+ A+A +G S+GL V + +S +
Sbjct: 191 LGQPSLDSCRIPAPRGLVLVPSRELAEQVR----AVAQPLGSSLGLQVRELGGGHGMSRI 246
Query: 149 IKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDR 208
+L+ L + Q D+LVATPG L + + +LE L +LV+DE D
Sbjct: 247 ----RLQ----------LSK-QPPADVLVATPGALWKGLKSQL-ISLEQLSFLVLDEADT 290
Query: 209 LLREAYQAWLPTVLQ 223
LL E++ + +L+
Sbjct: 291 LLDESFLELVDYILE 305
>ASPGD|ASPL0000034540 [details] [associations]
symbol:spb4 species:162425 "Emericella nidulans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0030686 "90S preribosome" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0000027 "ribosomal large
subunit assembly" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005730 EMBL:BN001306 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
InterPro:IPR025313 Pfam:PF13959 EMBL:AACD01000052
HOGENOM:HOG000268803 KO:K14809 OMA:CACVEYW RefSeq:XP_660780.1
ProteinModelPortal:Q5B8F4 STRING:Q5B8F4
EnsemblFungi:CADANIAT00009893 GeneID:2873958 KEGG:ani:AN3176.2
OrthoDB:EOG46MFT3 Uniprot:Q5B8F4
Length = 638
Score = 184 (69.8 bits), Expect = 3.4e-11, P = 3.4e-11
Identities = 60/205 (29%), Positives = 108/205 (52%)
Query: 42 ALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSN--RAV 99
A+ +MG + + PVQ + I + +D+ + + TGSGKTLS+ +P+V+ L +
Sbjct: 28 AVSSMGFTRMTPVQASA----IPLFMAHKDVVVEAVTGSGKTLSFLIPVVEKLLRLEEPI 83
Query: 100 RC--LRALVVLPTRDLALQVKDVFAAIA---PAVGLSVGLAVGQSSIADEISELIKR--P 152
+ + A++V PTR+LA Q+ +V ++ PA + + + + S + R P
Sbjct: 84 KKHHVGAIIVSPTRELASQIYNVLTSLLAFHPASAAVINTSETEDVPRPKHSSSVLRVVP 143
Query: 153 KLEAGICYDP-EDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLC-YLVVDETDRLL 210
+L G P ED+ L+ + ++LVATPGRL++ +++ + + LV+DE DRLL
Sbjct: 144 QLLLGGSTSPAEDLSTFLKRSPNLLVATPGRLLELLSSPHVYCPQSSFEMLVLDEADRLL 203
Query: 211 REAYQAWLPTVLQ-LTRSDNENRFS 234
++ L +L+ L + FS
Sbjct: 204 DLGFKETLQNILRRLPKQRRTGLFS 228
>TAIR|locus:2116920 [details] [associations]
symbol:AT4G34910 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0006606
"protein import into nucleus" evidence=RCA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:CP002687
GenomeReviews:CT486007_GR GO:GO:0003723 EMBL:AL161586
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 EMBL:AL079347
KO:K14810 HOGENOM:HOG000253015 OMA:TFLMSAT EMBL:BT002816
EMBL:BT004442 EMBL:AJ010467 IPI:IPI00520936 PIR:T10237 PIR:T51745
RefSeq:NP_195217.1 UniGene:At.24924 ProteinModelPortal:Q9SW44
SMR:Q9SW44 STRING:Q9SW44 PaxDb:Q9SW44 PRIDE:Q9SW44
EnsemblPlants:AT4G34910.1 GeneID:829643 KEGG:ath:AT4G34910
KEGG:dosa:Os03t0728800-01 GeneFarm:933 TAIR:At4g34910
InParanoid:Q9SW44 PhylomeDB:Q9SW44 ProtClustDB:CLSN2685920
Genevestigator:Q9SW44 GermOnline:AT4G34910 Uniprot:Q9SW44
Length = 626
Score = 124 (48.7 bits), Expect = 4.0e-11, Sum P(2) = 4.0e-11
Identities = 30/97 (30%), Positives = 58/97 (59%)
Query: 265 PRLVK-MVLSATLTQDPNKLAQLDLHHPLFLTTGETRYK---LPERLESYKLICESKLKP 320
PR + +++SAT + D KL +L LH+P+ LT E K +P ++ + + C ++ K
Sbjct: 229 PRRCQCLLMSATTSSDVEKLKKLILHNPIVLTLTEDNDKEEAVPSNVQQFWISCSAQDKL 288
Query: 321 LYLVALLQ-SLGEEKCIVFTSSVESTHRLCTLLNHFG 356
L+++ALL+ + ++K ++F ++++ RL L FG
Sbjct: 289 LHILALLKLEVVQKKILIFINTIDMGFRLKLFLEKFG 325
Score = 107 (42.7 bits), Expect = 4.0e-11, Sum P(2) = 4.0e-11
Identities = 62/200 (31%), Positives = 94/200 (47%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFE-RDLCINSPTGSGKTLSYALPIVQT 93
LD RL AL GI P + Q++ P + E +D+ + TGSGKTL+Y LP++Q
Sbjct: 53 LDSRLIRALTKKGIEK--PTLI---QQSAIPYILEGKDVVARAKTGSGKTLAYLLPLLQK 107
Query: 94 L-SNRAVRCLR----ALVVLPTRDLALQVKDVFAAIAPAVGLS-VGLAVGQSSIADEISE 147
L S +V + A +++P+R+L QV + ++ + L V L Q + + S+
Sbjct: 108 LFSADSVSKKKLAPSAFILVPSRELCQQV---YTEVSSLIELCRVQLKAVQLTSSMSASD 164
Query: 148 LIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINA---TRGFTLEHLCYLVVD 204
+ R L AG+ PE ILV+TP + A E L LV+D
Sbjct: 165 M--RNAL-AGL---PE-----------ILVSTPACIPKCFAAGVLEPTAVSESLSILVLD 207
Query: 205 ETDRLLREAYQAWLPTVLQL 224
E D LL Y+ L +V +
Sbjct: 208 EADLLLSYGYEDNLRSVTSI 227
>UNIPROTKB|A8MTP9 [details] [associations]
symbol:DDX52 "Probable ATP-dependent RNA helicase DDX52"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000242486
HOVERGEN:HBG051332 EMBL:AC091199 HGNC:HGNC:20038
PharmGKB:PA134904836 ChiTaRS:DDX52 NextBio:42007 IPI:IPI00394982
ProteinModelPortal:A8MTP9 SMR:A8MTP9 STRING:A8MTP9 PRIDE:A8MTP9
Ensembl:ENST00000394367 ArrayExpress:A8MTP9 Bgee:A8MTP9
Uniprot:A8MTP9
Length = 491
Score = 144 (55.7 bits), Expect = 4.2e-11, Sum P(3) = 4.2e-11
Identities = 36/118 (30%), Positives = 65/118 (55%)
Query: 28 PLDHLPCLDPRLKV---ALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTL 84
P+ LD K+ LQN+ + + F + + + I L R+L ++PTGSGKTL
Sbjct: 51 PIATFQQLDQEYKINSRLLQNI-LDAGFQMPTPIQMQAIPVMLHGRELLASAPTGSGKTL 109
Query: 85 SYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIA 142
++++PI+ L A + RAL++ PTR+LA Q+ I+ G + + + ++++A
Sbjct: 110 AFSIPILMQLKQPANKGFRALIISPTRELASQIHRELIKISEGTGFRIHM-IHKAAVA 166
Score = 69 (29.3 bits), Expect = 4.2e-11, Sum P(3) = 4.2e-11
Identities = 22/70 (31%), Positives = 35/70 (50%)
Query: 174 DILVATPGRLMDHINATR-GFTLEHLCYLVVDETDRLLREA---YQAWLPTVLQLTRSDN 229
DILV TP RL+ + G L + +LVVDE+D+L + ++ L ++ S
Sbjct: 179 DILVTTPNRLIYLLKQDPPGIDLASVEWLVVDESDKLFEDGKTGFRDQLASIFLACTSHK 238
Query: 230 ENRFSDASTF 239
R ++TF
Sbjct: 239 VRRAMFSATF 248
Score = 50 (22.7 bits), Expect = 4.2e-11, Sum P(3) = 4.2e-11
Identities = 20/81 (24%), Positives = 34/81 (41%)
Query: 269 KMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQ 328
+ + SAT D + +L+L + + ++ G R E +E L S+ L + L
Sbjct: 241 RAMFSATFAYDVEQWCKLNLDNVISVSIG-ARNSAVETVEQELLFVGSETGKLLAMRELV 299
Query: 329 SLG-EEKCIVFTSSVESTHRL 348
G +VF S+E L
Sbjct: 300 KKGFNPPVLVFVQSIERAKEL 320
>ZFIN|ZDB-GENE-060623-1 [details] [associations]
symbol:ddx52 "DEAD (Asp-Glu-Ala-Asp) box polypeptide
52" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 ZFIN:ZDB-GENE-060623-1
GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 CTD:11056 HOVERGEN:HBG051332 KO:K14779
OrthoDB:EOG4XKV6Q EMBL:BC117610 IPI:IPI00627696
RefSeq:NP_001037780.1 UniGene:Dr.13799 ProteinModelPortal:Q1ECZ5
STRING:Q1ECZ5 GeneID:407696 KEGG:dre:407696 NextBio:20818558
Uniprot:Q1ECZ5
Length = 606
Score = 136 (52.9 bits), Expect = 4.3e-11, Sum P(3) = 4.3e-11
Identities = 34/115 (29%), Positives = 62/115 (53%)
Query: 18 PVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSP 77
P V+ FE+ ++ LDPR+ ++ G + P+Q+ + + + +R++ +P
Sbjct: 159 PDPVTTFEELQKEY--DLDPRIIHNIKAAGFQTPTPIQM----QAVPLMMHKREILACAP 212
Query: 78 TGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSV 132
TGSGKT+++ LP++ L + RAL++ PTR+LA Q ++ VG V
Sbjct: 213 TGSGKTMAFCLPLLAHLRQPLNKGFRALIISPTRELATQTHRELLKLSEGVGFRV 267
Score = 82 (33.9 bits), Expect = 4.3e-11, Sum P(3) = 4.3e-11
Identities = 24/70 (34%), Positives = 36/70 (51%)
Query: 174 DILVATPGRLMDHINATR-GFTLEHLCYLVVDETDRLLREA---YQAWLPTVLQLTRSDN 229
DILV TP RL+ +N L + +LVVDE+D+L + ++ L T+ S N
Sbjct: 289 DILVTTPNRLIYLLNQDPPAINLSSVEWLVVDESDKLFEDGKTGFREQLATIFLACSSPN 348
Query: 230 ENRFSDASTF 239
R ++TF
Sbjct: 349 VRRVLFSATF 358
Score = 50 (22.7 bits), Expect = 4.3e-11, Sum P(3) = 4.3e-11
Identities = 20/85 (23%), Positives = 39/85 (45%)
Query: 265 PRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKL-KPLYL 323
P + +++ SAT D + +L+L + + ++ G R E +E L S+ K L +
Sbjct: 347 PNVRRVLFSATFATDVERWCKLNLDNLVSVSIG-ARNSAAETVEQQLLFVGSENGKILAM 405
Query: 324 VALLQSLGEEKCIVFTSSVESTHRL 348
L++ +VF S++ L
Sbjct: 406 RNLIKQGFLPPVLVFVQSIDRAREL 430
>ASPGD|ASPL0000044206 [details] [associations]
symbol:AN1949 species:162425 "Emericella nidulans"
[GO:0005524 "ATP binding" evidence=IEA] [GO:0030686 "90S
preribosome" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0005635 "nuclear envelope" evidence=IEA] [GO:0030687
"preribosome, large subunit precursor" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=IEA] [GO:0006364 "rRNA processing" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005730 EMBL:BN001307
GO:GO:0003723 EMBL:AACD01000029 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
HOGENOM:HOG000268799 KO:K13179 OMA:KDGYRSY RefSeq:XP_659553.1
ProteinModelPortal:Q5BBY1 STRING:Q5BBY1
EnsemblFungi:CADANIAT00008609 GeneID:2875602 KEGG:ani:AN1949.2
OrthoDB:EOG4ZKNVS Uniprot:Q5BBY1
Length = 609
Score = 135 (52.6 bits), Expect = 4.9e-11, Sum P(2) = 4.9e-11
Identities = 55/176 (31%), Positives = 87/176 (49%)
Query: 2 EEAKKKSMPVLPWMRSPVD-VSLFEDCPLDHLPCLDPRLKVALQNM-GISSL-FPVQVAV 58
E++ K ++P LP VD VSL + P D P L ++ + + GI + F +
Sbjct: 102 EDSGKANVPDLP----SVDAVSLPQ--P-DGGPKKFTELGLSEKTLQGIKEMGFETMTEI 154
Query: 59 WQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRA---LVVLPTRDLAL 115
Q TI P L RD+ + TGSGKTL++ +P ++ LS + +VV PTR+LAL
Sbjct: 155 QQRTIPPLLAGRDVLGAAKTGSGKTLAFLIPAIEMLSALRFKPRNGTGVIVVSPTRELAL 214
Query: 116 QVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQS 171
Q+ V + A + G+ +G ++ E +L K L + P +L LQ+
Sbjct: 215 QIFGVARELLTAHSQTYGIVIGGANRRAEAEKLTKGVNL---LIATPGRLLDHLQN 267
Score = 131 (51.2 bits), Expect = 1.4e-10, Sum P(2) = 1.4e-10
Identities = 25/66 (37%), Positives = 44/66 (66%)
Query: 167 QELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTR 226
++L V++L+ATPGRL+DH+ T GF ++L LV+DE DR+L ++ + ++++
Sbjct: 245 EKLTKGVNLLIATPGRLLDHLQNTPGFVFKNLKTLVIDEADRILEVGFEDEMRQIIKIL- 303
Query: 227 SDNENR 232
NE+R
Sbjct: 304 -PNEDR 308
Score = 94 (38.1 bits), Expect = 4.9e-11, Sum P(2) = 4.9e-11
Identities = 32/107 (29%), Positives = 52/107 (48%)
Query: 270 MVLSATLTQDPNKLAQLDLHH-PLFLTTGETR-YKLPERLESYKLICESKLKPLYLVALL 327
M+ SAT T LA++ L PL++ + + E LE +ICE+ + L L + L
Sbjct: 311 MLFSATQTTKVEDLARISLRPGPLYINVDHRKEHSTVEGLEQGYVICEADKRFLLLFSFL 370
Query: 328 QSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVR 374
+ ++K IVF SS LLN+ + + + + G Q+Q R
Sbjct: 371 KRNLKKKIIVFFSSCNCVKYHAELLNY---IDLPVLDLHGKQKQQKR 414
>UNIPROTKB|F1N5H8 [details] [associations]
symbol:DDX31 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
GeneTree:ENSGT00550000075041 OMA:ARIGCHG EMBL:DAAA02032283
IPI:IPI00837660 UniGene:Bt.35580 ProteinModelPortal:F1N5H8
PRIDE:F1N5H8 Ensembl:ENSBTAT00000042916 Uniprot:F1N5H8
Length = 736
Score = 183 (69.5 bits), Expect = 5.5e-11, P = 5.5e-11
Identities = 81/296 (27%), Positives = 139/296 (46%)
Query: 57 AVWQETIGPGLFE-RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLAL 115
+V +++I P L E RD + S TGSGKTL+Y +P+VQ+L + +++ + AL
Sbjct: 158 SVQKQSI-PVLLEGRDALVRSQTGSGKTLAYCIPVVQSL-----QAMQSKIQRGDGPYAL 211
Query: 116 QVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKR-PKLEAGICYDPEDVLQE---LQS 171
+ P L++ QS D + +L+K + G+ E E L+
Sbjct: 212 -------ILVPTRELAL-----QSF--DTVQKLLKPFTWIVPGVLMGGEKRKSEKARLRK 257
Query: 172 AVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNEN 231
++IL++TPGRL+DHI +T+ + +L++DE DR+L ++ L +L ++ +
Sbjct: 258 GINILISTPGRLVDHIKSTKNIHFRQIRWLILDEADRILDLGFEKDLTVILNAVNAECQE 317
Query: 232 RFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHP 291
R L SA + R + D P + ++ + P A L+ P
Sbjct: 318 R----QNVLLSATLTEGVARLADIS--LHD---PVSISVLDESHDVSSPESEAFLEASPP 368
Query: 292 LFLTTGETRYKLPERLESYKLICESKLKPLYLVA-LLQSLG---EEKCIVFTSSVE 343
T + +P LE + ++ SKL+ + L A +LQ ++K IVF SS E
Sbjct: 369 Q-ATDELDGFAIPAGLEQHVVVVPSKLRLVCLAAFILQKCKFERDQKVIVFFSSCE 423
>UNIPROTKB|Q8EIE5 [details] [associations]
symbol:dbpA "ATP-dependent RNA helicase DbpA"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268809 KO:K05591
OMA:HIDPARF ProtClustDB:PRK11776 InterPro:IPR005580 Pfam:PF03880
HSSP:P10081 RefSeq:NP_716527.1 ProteinModelPortal:Q8EIE5
GeneID:1168744 KEGG:son:SO_0897 PATRIC:23521451 Uniprot:Q8EIE5
Length = 458
Score = 112 (44.5 bits), Expect = 7.0e-11, Sum P(3) = 7.0e-11
Identities = 30/99 (30%), Positives = 51/99 (51%)
Query: 149 IKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDR 208
+K L G+ P+ + L+ I+V TPGR++DH++ R L +L LV+DE DR
Sbjct: 99 VKVLTLCGGVPMGPQ--IGSLEHGAHIIVGTPGRIVDHLDRNR-LDLSNLNMLVLDEADR 155
Query: 209 LLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSL 247
+L +Q L +++ + + + A TF P S+
Sbjct: 156 MLEMGFQPQLDAIIEQSPRERQTLLFSA-TF-PEQIQSI 192
Score = 96 (38.9 bits), Expect = 7.0e-11, Sum P(3) = 7.0e-11
Identities = 26/86 (30%), Positives = 45/86 (52%)
Query: 43 LQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCL 102
L +MG + + P+Q +++ L D+ TGSGKT ++ L ++ L + R +
Sbjct: 16 LSSMGYNEMTPIQA----QSLPAILAGEDVIGQGKTGSGKTAAFGLGLLNKLDVKRFR-I 70
Query: 103 RALVVLPTRDLALQVKDVFAAIAPAV 128
+ LV+ PTR+LA QV +A +
Sbjct: 71 QTLVLCPTRELADQVAQEIRTLARGI 96
Score = 56 (24.8 bits), Expect = 7.0e-11, Sum P(3) = 7.0e-11
Identities = 19/88 (21%), Positives = 40/88 (45%)
Query: 270 MVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICE-SKLKPLYLVALLQ 328
++ SAT + +A+ +++P+ + T K Y+L + S+++ L L+ L
Sbjct: 179 LLFSATFPEQIQSIAKQIMYNPVMVKAAVTHEKNTIEQHFYQLDDDKSRMQALQLLLLEH 238
Query: 329 SLGEEKCIVFTSSVESTHRLCTLLNHFG 356
E +VF ++ T ++ L G
Sbjct: 239 K--PESAVVFCNTKRETQKVADELEGLG 264
>TIGR_CMR|SO_0897 [details] [associations]
symbol:SO_0897 "ATP-dependent RNA helicase DbpA"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268809 KO:K05591
OMA:HIDPARF ProtClustDB:PRK11776 InterPro:IPR005580 Pfam:PF03880
HSSP:P10081 RefSeq:NP_716527.1 ProteinModelPortal:Q8EIE5
GeneID:1168744 KEGG:son:SO_0897 PATRIC:23521451 Uniprot:Q8EIE5
Length = 458
Score = 112 (44.5 bits), Expect = 7.0e-11, Sum P(3) = 7.0e-11
Identities = 30/99 (30%), Positives = 51/99 (51%)
Query: 149 IKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDR 208
+K L G+ P+ + L+ I+V TPGR++DH++ R L +L LV+DE DR
Sbjct: 99 VKVLTLCGGVPMGPQ--IGSLEHGAHIIVGTPGRIVDHLDRNR-LDLSNLNMLVLDEADR 155
Query: 209 LLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSL 247
+L +Q L +++ + + + A TF P S+
Sbjct: 156 MLEMGFQPQLDAIIEQSPRERQTLLFSA-TF-PEQIQSI 192
Score = 96 (38.9 bits), Expect = 7.0e-11, Sum P(3) = 7.0e-11
Identities = 26/86 (30%), Positives = 45/86 (52%)
Query: 43 LQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCL 102
L +MG + + P+Q +++ L D+ TGSGKT ++ L ++ L + R +
Sbjct: 16 LSSMGYNEMTPIQA----QSLPAILAGEDVIGQGKTGSGKTAAFGLGLLNKLDVKRFR-I 70
Query: 103 RALVVLPTRDLALQVKDVFAAIAPAV 128
+ LV+ PTR+LA QV +A +
Sbjct: 71 QTLVLCPTRELADQVAQEIRTLARGI 96
Score = 56 (24.8 bits), Expect = 7.0e-11, Sum P(3) = 7.0e-11
Identities = 19/88 (21%), Positives = 40/88 (45%)
Query: 270 MVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICE-SKLKPLYLVALLQ 328
++ SAT + +A+ +++P+ + T K Y+L + S+++ L L+ L
Sbjct: 179 LLFSATFPEQIQSIAKQIMYNPVMVKAAVTHEKNTIEQHFYQLDDDKSRMQALQLLLLEH 238
Query: 329 SLGEEKCIVFTSSVESTHRLCTLLNHFG 356
E +VF ++ T ++ L G
Sbjct: 239 K--PESAVVFCNTKRETQKVADELEGLG 264
>POMBASE|SPBC4F6.07c [details] [associations]
symbol:SPBC4F6.07c "ATP-dependent RNA helicase Mak5
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISS] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=ISS;IDA] [GO:0006364 "rRNA processing" evidence=IEA]
[GO:0042254 "ribosome biogenesis" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 PomBase:SPBC4F6.07c
GO:GO:0005524 GO:GO:0005730 EMBL:CU329671 GenomeReviews:CU329671_GR
GO:GO:0042254 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006364 GO:GO:0004004 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 KO:K14805 HOGENOM:HOG000290702
OMA:VEEGYFA OrthoDB:EOG44J5S7 PIR:T40504 RefSeq:NP_596107.1
ProteinModelPortal:O74393 STRING:O74393 EnsemblFungi:SPBC4F6.07c.1
GeneID:2540874 KEGG:spo:SPBC4F6.07c NextBio:20801990 Uniprot:O74393
Length = 648
Score = 139 (54.0 bits), Expect = 8.6e-11, Sum P(2) = 8.6e-11
Identities = 42/120 (35%), Positives = 63/120 (52%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQE-TIGPGLFERDLCINSPTGSGKTLSYALPIVQ- 92
L P + +L G S P+Q V E +IG F D+ + TGSGKTL++ +PI++
Sbjct: 129 LSPEMLGSLSKAGFSKPMPIQSLVIPEASIG---F--DIIGKADTGSGKTLAFGIPILEH 183
Query: 93 TLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRP 152
L N + ++ALVV PTR+LA Q+ F I P+ + V G ++ + L K P
Sbjct: 184 CLRNVDAKYVQALVVAPTRELAHQICQHFELIKPSPNIRVMSITGGLAVQKQQRLLNKHP 243
Score = 88 (36.0 bits), Expect = 8.6e-11, Sum P(2) = 8.6e-11
Identities = 49/182 (26%), Positives = 76/182 (41%)
Query: 175 ILVATPGRLMDHINATR--GFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENR 232
++VATPGRL IN G + C LV+DE DRLL++++ L +L++ + +
Sbjct: 245 VVVATPGRLWSVINENNLTGNFKKIKC-LVLDEADRLLQKSHFEELSKLLEILGNPMHTQ 303
Query: 233 FSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLH-HP 291
TF+ SA T G+++ K + + S N L ++ P
Sbjct: 304 ---RQTFIFSA-----TFDE-GLQQRLKKNMKGNITEKYNSPM----ENMLKEVRFFGKP 350
Query: 292 LFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTL 351
FL LE + C K LYL L+ K +VF + +E R+
Sbjct: 351 KFLDANPQSAVASRVLEGL-IECAPAEKDLYLYYLIMRY-PGKTMVFANGIEDIKRITPF 408
Query: 352 LN 353
LN
Sbjct: 409 LN 410
>POMBASE|SPAC1093.05 [details] [associations]
symbol:SPAC1093.05 "ATP-dependent RNA helicase Hca4
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISO] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=ISO] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0005829
"cytosol" evidence=IDA] [GO:0006364 "rRNA processing" evidence=ISO]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 PomBase:SPAC1093.05 GO:GO:0005829 GO:GO:0005524
EMBL:CU329670 GO:GO:0005730 GenomeReviews:CU329670_GR GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K14776 InterPro:IPR025313 Pfam:PF13959 HOGENOM:HOG000268801
OMA:MFERKNQ OrthoDB:EOG4R53B0 PIR:T50068 RefSeq:NP_594652.1
ProteinModelPortal:Q9UTP9 SMR:Q9UTP9 STRING:Q9UTP9
EnsemblFungi:SPAC1093.05.1 GeneID:2541630 KEGG:spo:SPAC1093.05
NextBio:20802723 Uniprot:Q9UTP9
Length = 735
Score = 153 (58.9 bits), Expect = 9.1e-11, Sum P(2) = 9.1e-11
Identities = 53/179 (29%), Positives = 92/179 (51%)
Query: 2 EEAKKKSMPVLPWMRSPVDVSLFEDCPLDH---LPCLDPRLKVALQNMGISSLFPVQVAV 58
E+ +K+ + + S ++ +L E +DH LP P K AL+N +L +Q
Sbjct: 14 EKKRKEEEEEIEELNSQIE-ALSET--VDHFAELPLTQPT-KSALKNAHFITLTEIQ--- 66
Query: 59 WQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNR---AVRCLRALVVLPTRDLAL 115
++ I L RD+ + TGSGKTL++ +P+++ L + ++ L ALV+ PTR+LA+
Sbjct: 67 -KQCIPSALKGRDILGAAKTGSGKTLAFIVPLIENLYRKKWTSLDGLGALVISPTRELAI 125
Query: 116 QVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVD 174
Q + I S GL +G ++ +E E + R + +C P +LQ + AV+
Sbjct: 126 QTFETLVKIGRLHSFSAGLIIGGNNYKEE-KERLSRMNIL--VC-TPGRLLQHIDQAVN 180
Score = 100 (40.3 bits), Expect = 6.5e-05, Sum P(2) = 6.5e-05
Identities = 21/56 (37%), Positives = 33/56 (58%)
Query: 167 QELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVL 222
+E S ++ILV TPGRL+ HI+ F L L++DE DR+L ++ L ++
Sbjct: 155 KERLSRMNILVCTPGRLLQHIDQAVNFDTSGLQMLILDEADRILDMGFRTTLDAIV 210
Score = 74 (31.1 bits), Expect = 9.1e-11, Sum P(2) = 9.1e-11
Identities = 30/108 (27%), Positives = 47/108 (43%)
Query: 270 MVLSATLTQDPNKLAQLDLHHPLFLTTGET-RYKLPERLESYKLICESKLKPLYLVALLQ 328
M+ SAT T+ LA+L L +P F++ E P L + L K L ++
Sbjct: 220 MLFSATQTKSVKDLARLSLQNPDFISVHENDTSSTPSNLNQFYLTVPLTEKLDILFGFIR 279
Query: 329 SLGEEKCIVFTSSVESTHRLCTLLNHFGELR--IKIKEYSGLQRQSVR 374
+ + K IVF SS + + F +R I + G Q+Q+ R
Sbjct: 280 THLKFKTIVFLSSCKQVR---FVYETFRRMRPGISLLHLHGKQKQTTR 324
>RGD|1311976 [details] [associations]
symbol:Ddx28 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 28"
species:10116 "Rattus norvegicus" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISO] [GO:0005730 "nucleolus"
evidence=IEA;ISO] [GO:0005737 "cytoplasm" evidence=ISO] [GO:0005739
"mitochondrion" evidence=ISO] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0042645 "mitochondrial nucleoid"
evidence=IEA;ISO] InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 RGD:1311976
GO:GO:0005524 GO:GO:0005730 GO:GO:0003676 GO:GO:0042645
EMBL:CH473972 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 CTD:55794
OMA:RARRDHF OrthoDB:EOG42RD7H GeneTree:ENSGT00670000098028
IPI:IPI00870370 RefSeq:NP_001102368.1 UniGene:Rn.140812
Ensembl:ENSRNOT00000026817 GeneID:364995 KEGG:rno:364995
UCSC:RGD:1311976 NextBio:686447 Uniprot:D4A7Q5
Length = 540
Score = 179 (68.1 bits), Expect = 9.3e-11, P = 9.3e-11
Identities = 65/186 (34%), Positives = 99/186 (53%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
L+PR+ +ALQ + P V +TI P L R + + TGSGKTLSY LP+ Q L
Sbjct: 133 LEPRVLLALQKAVPEIVQPTSVQ--SKTIPPLLRGRHILCAAETGSGKTLSYLLPLFQRL 190
Query: 95 ------SNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISEL 148
+R+ R LV++P+R+LA QV+ A+A ++G + L V + + +
Sbjct: 191 LKGPELDSRSSTAPRGLVLVPSRELAEQVQ----AVAQSLGRYLDLQVIE--LGGGLG-- 242
Query: 149 IKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDR 208
+ R KL+ G + SA D+LVATPG L + + +L HL ++V+DE D
Sbjct: 243 MNRLKLQLG----------KWPSA-DVLVATPGALWKALKSQL-ISLHHLNFIVLDEVDT 290
Query: 209 LLREAY 214
LL E++
Sbjct: 291 LLDESF 296
>UNIPROTKB|A4R715 [details] [associations]
symbol:DHH1 "ATP-dependent RNA helicase DHH1"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0006417 GO:GO:0006397 GO:GO:0003723 GO:GO:0000932
GO:GO:0051028 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
EMBL:CM001234 GO:GO:0008026 eggNOG:COG0513 KO:K12614
InterPro:IPR014014 PROSITE:PS51195 RefSeq:XP_003716556.1
GeneID:2676879 KEGG:mgr:MGG_03388 OrthoDB:EOG4QJVWF Uniprot:A4R715
Length = 535
Score = 138 (53.6 bits), Expect = 9.6e-11, Sum P(3) = 9.6e-11
Identities = 31/104 (29%), Positives = 59/104 (56%)
Query: 46 MGISSL-FPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRA 104
MGI F + +E+I L RD+ + G+GKT ++ +P ++T+ N V ++
Sbjct: 60 MGIFEAGFEKPSPIQEESIPVALTGRDILARAKNGTGKTAAFVVPALETI-NPKVSKIQC 118
Query: 105 LVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISEL 148
L+++PTR+LA+Q V + +G++V + G +++ D+I L
Sbjct: 119 LILVPTRELAMQTSQVCKTLGKHLGINVMVTTGGTTLRDDILRL 162
Score = 81 (33.6 bits), Expect = 9.6e-11, Sum P(3) = 9.6e-11
Identities = 21/68 (30%), Positives = 35/68 (51%)
Query: 163 EDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVL 222
+D+L+ LQ V I+V TPGR++D + L ++DE D+LL + + +L
Sbjct: 157 DDILR-LQDPVHIVVGTPGRILD-LAGKNVADLSECPMFIMDEADKLLSIEFTPVIEQLL 214
Query: 223 QLTRSDNE 230
Q D +
Sbjct: 215 QFHPKDRQ 222
Score = 43 (20.2 bits), Expect = 9.6e-11, Sum P(3) = 9.6e-11
Identities = 23/103 (22%), Positives = 40/103 (38%)
Query: 255 VERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPER-LESYKLI 313
+E+ + P R V M+ SAT + + ++ +P + + +L R + Y
Sbjct: 210 IEQLLQFHPKDRQV-MLFSATFPISVKEFSDKNMTNPYEINLMD---ELTLRGITQYYAF 265
Query: 314 CESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFG 356
E K K L L L + I+F +S L + G
Sbjct: 266 VEEKQKVHCLNTLFSKLQINQSIIFCNSTNRVELLAKKITELG 308
>FB|FBgn0037561 [details] [associations]
symbol:CG9630 species:7227 "Drosophila melanogaster"
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 EMBL:AE014297 GO:GO:0005524 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
InterPro:IPR025313 Pfam:PF13959 HSSP:P10081 KO:K14809
GeneTree:ENSGT00550000074969 EMBL:AY051513 RefSeq:NP_649777.1
UniGene:Dm.1101 ProteinModelPortal:Q9VHU1 SMR:Q9VHU1 IntAct:Q9VHU1
STRING:Q9VHU1 PaxDb:Q9VHU1 PRIDE:Q9VHU1 EnsemblMetazoa:FBtr0081866
GeneID:40974 KEGG:dme:Dmel_CG9630 UCSC:CG9630-RA
FlyBase:FBgn0037561 InParanoid:Q9VHU1 OMA:CACVEYW OrthoDB:EOG4TDZ1Q
PhylomeDB:Q9VHU1 GenomeRNAi:40974 NextBio:821545 Bgee:Q9VHU1
GermOnline:CG9630 Uniprot:Q9VHU1
Length = 613
Score = 157 (60.3 bits), Expect = 1.0e-10, Sum P(2) = 1.0e-10
Identities = 71/226 (31%), Positives = 105/226 (46%)
Query: 29 LDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYAL 88
LD P D L+V +Q+ G + PVQ A I L +D+ + TGSGKTL++ +
Sbjct: 9 LDKPPLSDAVLQV-VQSFGFQQMTPVQTAA----IPLLLARKDVSAEAVTGSGKTLAFLV 63
Query: 89 PIVQTLSNR------AVRCLRALVVLPTRDLALQVKDVFAAIAPAVGL---SVGLAVGQS 139
P+++ L R + + ALV+ PTR+LA Q+ +V A L + L VG +
Sbjct: 64 PMLEILQRRHKETPWGPKEIGALVISPTRELARQISEVLAQFLEHEDLEHLNQQLIVGGN 123
Query: 140 SIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTL---- 195
SI ++I+ L + C ILV TPGRL D + +G L
Sbjct: 124 SIEEDIATLRRETP-----C---------------ILVCTPGRLED-LFQRKGDDLNLAA 162
Query: 196 --EHLCYLVVDETDRLLREAYQAWLPTVL-QLTRSDNENRFSDAST 238
+ L +LV+DE DRLL ++ + +L L R FS T
Sbjct: 163 QVKSLEFLVLDEADRLLDLGFKTSVNNILGYLPRQRRTGLFSATQT 208
Score = 67 (28.6 bits), Expect = 1.0e-10, Sum P(2) = 1.0e-10
Identities = 20/68 (29%), Positives = 34/68 (50%)
Query: 271 VLSATLTQDPNKLAQLDLHHPLFLTTGE-TRYKLPERLESYKLICESKLKPLYLVALLQS 329
+ SAT T + L + L +P+ ++ E P RL+++ I E +LK VALL+
Sbjct: 202 LFSATQTTEVTDLIRAGLRNPVLVSVKEKASVNTPARLQNFYRIVEPELK---FVALLEF 258
Query: 330 LGEEKCIV 337
L ++
Sbjct: 259 LSSPATVI 266
>UNIPROTKB|Q9Y2R4 [details] [associations]
symbol:DDX52 "Probable ATP-dependent RNA helicase DDX52"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005730 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 CTD:11056 HOGENOM:HOG000242486
HOVERGEN:HBG051332 KO:K14779 OMA:NVMKQSG OrthoDB:EOG4XKV6Q
EMBL:AF077033 EMBL:AK001652 EMBL:AK093661 EMBL:AC091199
EMBL:BC041785 EMBL:AJ010840 IPI:IPI00032423 RefSeq:NP_008941.2
UniGene:Hs.590937 PDB:3DKP PDBsum:3DKP ProteinModelPortal:Q9Y2R4
SMR:Q9Y2R4 IntAct:Q9Y2R4 STRING:Q9Y2R4 PhosphoSite:Q9Y2R4
DMDM:296439375 SWISS-2DPAGE:Q9Y2R4 PaxDb:Q9Y2R4 PRIDE:Q9Y2R4
Ensembl:ENST00000349699 GeneID:11056 KEGG:hsa:11056 UCSC:uc002hoh.2
GeneCards:GC17M035969 HGNC:HGNC:20038 MIM:612500 neXtProt:NX_Q9Y2R4
PharmGKB:PA134904836 InParanoid:Q9Y2R4 PhylomeDB:Q9Y2R4
ChiTaRS:DDX52 EvolutionaryTrace:Q9Y2R4 GenomeRNAi:11056
NextBio:42007 ArrayExpress:Q9Y2R4 Bgee:Q9Y2R4 CleanEx:HS_DDX52
Genevestigator:Q9Y2R4 GermOnline:ENSG00000141141 Uniprot:Q9Y2R4
Length = 599
Score = 144 (55.7 bits), Expect = 1.0e-10, Sum P(3) = 1.0e-10
Identities = 36/118 (30%), Positives = 65/118 (55%)
Query: 28 PLDHLPCLDPRLKV---ALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTL 84
P+ LD K+ LQN+ + + F + + + I L R+L ++PTGSGKTL
Sbjct: 159 PIATFQQLDQEYKINSRLLQNI-LDAGFQMPTPIQMQAIPVMLHGRELLASAPTGSGKTL 217
Query: 85 SYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIA 142
++++PI+ L A + RAL++ PTR+LA Q+ I+ G + + + ++++A
Sbjct: 218 AFSIPILMQLKQPANKGFRALIISPTRELASQIHRELIKISEGTGFRIHM-IHKAAVA 274
Score = 69 (29.3 bits), Expect = 1.0e-10, Sum P(3) = 1.0e-10
Identities = 22/70 (31%), Positives = 35/70 (50%)
Query: 174 DILVATPGRLMDHINATR-GFTLEHLCYLVVDETDRLLREA---YQAWLPTVLQLTRSDN 229
DILV TP RL+ + G L + +LVVDE+D+L + ++ L ++ S
Sbjct: 287 DILVTTPNRLIYLLKQDPPGIDLASVEWLVVDESDKLFEDGKTGFRDQLASIFLACTSHK 346
Query: 230 ENRFSDASTF 239
R ++TF
Sbjct: 347 VRRAMFSATF 356
Score = 50 (22.7 bits), Expect = 1.0e-10, Sum P(3) = 1.0e-10
Identities = 20/81 (24%), Positives = 34/81 (41%)
Query: 269 KMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQ 328
+ + SAT D + +L+L + + ++ G R E +E L S+ L + L
Sbjct: 349 RAMFSATFAYDVEQWCKLNLDNVISVSIG-ARNSAVETVEQELLFVGSETGKLLAMRELV 407
Query: 329 SLG-EEKCIVFTSSVESTHRL 348
G +VF S+E L
Sbjct: 408 KKGFNPPVLVFVQSIERAKEL 428
>POMBASE|SPAC1006.07 [details] [associations]
symbol:SPAC1006.07 "translation initiation factor eIF4A
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0002183
"cytoplasmic translational initiation" evidence=NAS] [GO:0003743
"translation initiation factor activity" evidence=ISO] [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISO] [GO:0005524
"ATP binding" evidence=IC] [GO:0005829 "cytosol" evidence=IDA]
[GO:0006413 "translational initiation" evidence=ISO] [GO:0016281
"eukaryotic translation initiation factor 4F complex" evidence=ISO]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 PomBase:SPAC1006.07 GO:GO:0005829 GO:GO:0005524
EMBL:CU329670 GenomeReviews:CU329670_GR GO:GO:0016281 GO:GO:0003743
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 HOGENOM:HOG000268797 InterPro:IPR014014
PROSITE:PS51195 GO:GO:0002183 KO:K03257 OrthoDB:EOG4PG98F
EMBL:X80796 EMBL:L40627 PIR:S71745 RefSeq:NP_594854.1
ProteinModelPortal:P47943 SMR:P47943 STRING:P47943 PRIDE:P47943
EnsemblFungi:SPAC1006.07.1 GeneID:2542948 KEGG:spo:SPAC1006.07
OMA:PILEMED NextBio:20803983 Uniprot:P47943
Length = 392
Score = 138 (53.6 bits), Expect = 1.2e-10, Sum P(2) = 1.2e-10
Identities = 34/114 (29%), Positives = 63/114 (55%)
Query: 36 DPRLKVALQNMGISSL-FPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
D LK L GI + F A+ Q I P L ERD+ + +G+GKT ++++ ++Q +
Sbjct: 23 DMNLKPELLR-GIYAYGFERPSAIQQRAIMPILGERDVLAQAQSGTGKTATFSISVLQKI 81
Query: 95 SNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISEL 148
+C +AL++ PTR+LA Q++ V A+ + + +G + + D+++ L
Sbjct: 82 DTSLKQC-QALILAPTRELAQQIQKVVVALGDLMNVECHACIGGTLVRDDMAAL 134
Score = 81 (33.6 bits), Expect = 1.2e-10, Sum P(2) = 1.2e-10
Identities = 19/61 (31%), Positives = 32/61 (52%)
Query: 164 DVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQ 223
D + LQ+ V ++V TPGR+ D I R + + V+DE D +L ++ + + Q
Sbjct: 129 DDMAALQAGVHVVVGTPGRVHDMIQR-RALPTDAVQMFVLDEADEMLSRGFKDQIYDIFQ 187
Query: 224 L 224
L
Sbjct: 188 L 188
Score = 52 (23.4 bits), Expect = 1.2e-07, Sum P(2) = 1.2e-07
Identities = 21/94 (22%), Positives = 44/94 (46%)
Query: 255 VERGFKDKPY------PRLVKMVL-SATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERL 307
+ RGFKD+ Y P ++VL SAT+ QD ++ + P+ + + L
Sbjct: 174 LSRGFKDQIYDIFQLLPPTAQVVLLSATMPQDVLEVTTKFMRDPIRILVKKDELTLEGIK 233
Query: 308 ESYKLICESKLKPLYLVALLQSLGEEKCIVFTSS 341
+ Y + + + K L L +++ + ++F ++
Sbjct: 234 QFYVAVEKEEWKLDTLCDLYETVTVTQAVIFCNT 267
>UNIPROTKB|J3QR64 [details] [associations]
symbol:EIF4A1 "Eukaryotic initiation factor 4A-I"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR011545 Pfam:PF00270 PROSITE:PS00039
GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
EMBL:AC016876 HGNC:HGNC:3282 ChiTaRS:EIF4A1 Ensembl:ENST00000581384
Uniprot:J3QR64
Length = 214
Score = 128 (50.1 bits), Expect = 1.3e-10, Sum P(2) = 1.3e-10
Identities = 30/102 (29%), Positives = 59/102 (57%)
Query: 57 AVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQ 116
A+ Q I P + D+ + +G+GKT ++A+ I+Q + ++ +ALV+ PTR+LA Q
Sbjct: 68 AIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIE-LDLKATQALVLAPTRELAQQ 126
Query: 117 VKDVFAAIAPAVGLSVGLAVGQSSIADEISEL-IKRPKLEAG 157
++ V A+ +G S +G +++ E+ +L ++ P + G
Sbjct: 127 IQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVG 168
Score = 78 (32.5 bits), Expect = 1.3e-10, Sum P(2) = 1.3e-10
Identities = 19/59 (32%), Positives = 34/59 (57%)
Query: 166 LQELQ-SAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQ 223
+Q+LQ A I+V TPGR+ D +N R + +++ V+DE D +L ++ + + Q
Sbjct: 155 VQKLQMEAPHIIVGTPGRVFDMLNR-RYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQ 212
>UNIPROTKB|Q9NXZ2 [details] [associations]
symbol:DDX43 "Probable ATP-dependent RNA helicase DDX43"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004004 "ATP-dependent
RNA helicase activity" evidence=TAS] [GO:0005622 "intracellular"
evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR011545
Pfam:PF00013 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS50084 PROSITE:PS51194 SMART:SM00322 SMART:SM00490
GO:GO:0005524 GO:GO:0003723 GO:GO:0005622 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268804
HOVERGEN:HBG015893 EMBL:AJ278110 EMBL:AL136751 EMBL:BC066938
IPI:IPI00032899 RefSeq:NP_061135.2 UniGene:Hs.125507
ProteinModelPortal:Q9NXZ2 SMR:Q9NXZ2 STRING:Q9NXZ2
PhosphoSite:Q9NXZ2 DMDM:145559466 PRIDE:Q9NXZ2 DNASU:55510
Ensembl:ENST00000370336 GeneID:55510 KEGG:hsa:55510 UCSC:uc003pgw.3
CTD:55510 GeneCards:GC06P074161 HGNC:HGNC:18677 HPA:HPA031380
HPA:HPA031381 MIM:606286 neXtProt:NX_Q9NXZ2 PharmGKB:PA134988734
InParanoid:Q9NXZ2 OMA:VLDITHV OrthoDB:EOG43BMNQ PhylomeDB:Q9NXZ2
ChiTaRS:DDX43 GenomeRNAi:55510 NextBio:59918 ArrayExpress:Q9NXZ2
Bgee:Q9NXZ2 CleanEx:HS_DDX43 Genevestigator:Q9NXZ2
GermOnline:ENSG00000080007 Uniprot:Q9NXZ2
Length = 648
Score = 120 (47.3 bits), Expect = 1.4e-10, Sum P(3) = 1.4e-10
Identities = 24/75 (32%), Positives = 46/75 (61%)
Query: 163 EDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVL 222
++ ++EL+ VDI++ATPGRL D + + L+++ YLV+DE D++L ++ + +L
Sbjct: 356 DEQIEELKKGVDIIIATPGRLND-LQMSNFVNLKNITYLVLDEADKMLDMGFEPQIMKIL 414
Query: 223 QLTRSDNENRFSDAS 237
R D + + A+
Sbjct: 415 LDVRPDRQTVMTSAT 429
Score = 91 (37.1 bits), Expect = 1.4e-10, Sum P(3) = 1.4e-10
Identities = 36/126 (28%), Positives = 57/126 (45%)
Query: 30 DHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALP 89
D C P + ++ G P+Q W + G+ DL + TG+GKTL Y +P
Sbjct: 245 DAFQCY-PEVMENIKKAGFQKPTPIQSQAWPIVL-QGI---DLIGVAQTGTGKTLCYLMP 299
Query: 90 -IVQTLSNRAVRCLR----ALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADE 144
+ + +++ R LV+ PTR+LALQV+ + GL G + ++
Sbjct: 300 GFIHLVLQPSLKGQRNRPGMLVLTPTRELALQVEGECCKYSYK-GLRSVCVYGGGNRDEQ 358
Query: 145 ISELIK 150
I EL K
Sbjct: 359 IEELKK 364
Score = 55 (24.4 bits), Expect = 1.4e-10, Sum P(3) = 1.4e-10
Identities = 18/72 (25%), Positives = 33/72 (45%)
Query: 270 MVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQS 329
++ SAT ++LAQ L P+ + G ++ ++ + K ++ LQS
Sbjct: 424 VMTSATWPHSVHRLAQSYLKEPMIVYVGTLDLVAVSSVKQNIIVTTEEEKWSHMQTFLQS 483
Query: 330 LGE-EKCIVFTS 340
+ +K IVF S
Sbjct: 484 MSSTDKVIVFVS 495
>UNIPROTKB|E2RC35 [details] [associations]
symbol:DDX10 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 KO:K14776
InterPro:IPR025313 Pfam:PF13959 GeneTree:ENSGT00550000074980
CTD:1662 OMA:ADKVIEP EMBL:AAEX03003508 RefSeq:XP_536583.2
Ensembl:ENSCAFT00000022758 GeneID:479448 KEGG:cfa:479448
Uniprot:E2RC35
Length = 871
Score = 121 (47.7 bits), Expect = 1.6e-10, Sum P(2) = 1.6e-10
Identities = 34/119 (28%), Positives = 60/119 (50%)
Query: 58 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSN---RAVRCLRALVVLPTRDLA 114
+ ++TIG L +D+ + TGSGKTL++ +P+++ L + L L++ PTR+LA
Sbjct: 95 IQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLEALYRLQWTSTDGLGVLIISPTRELA 154
Query: 115 LQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAV 173
Q +V + S GL +G + E +E I + +C P +LQ + +
Sbjct: 155 YQTFEVLRKVGKNHDFSAGLIIGGKDLKHE-AERINN--INILVC-TPGRLLQHMDETI 209
Score = 108 (43.1 bits), Expect = 1.6e-10, Sum P(2) = 1.6e-10
Identities = 37/109 (33%), Positives = 56/109 (51%)
Query: 270 MVLSATLTQDPNKLAQLDLHHPLFLTTGE-TRYKLPERLESYKLICESKLKPLYLVALLQ 328
++ SAT T+ LA+L L +P ++ E +Y P LE ++CE + K L + L+
Sbjct: 250 LLFSATQTKSVKDLARLSLKNPEYIWVHEKAKYSTPATLEQNYIVCELQQKISVLYSFLR 309
Query: 329 SLGEEKCIVFTSSVESTHRLCTLLNHFGELR--IKIKEYSGLQRQSVRR 375
S ++K IVF SS + L + F LR I I G Q+Q +RR
Sbjct: 310 SHLKKKSIVFFSSCKEVQYLYRV---FCRLRPGISILALHGRQQQ-MRR 354
Score = 104 (41.7 bits), Expect = 1.1e-08, Sum P(2) = 1.1e-08
Identities = 28/92 (30%), Positives = 47/92 (51%)
Query: 150 KRPKLEAGICYDPEDVLQELQ--SAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETD 207
K AG+ +D+ E + + ++ILV TPGRL+ H++ T F +L LV+DE D
Sbjct: 166 KNHDFSAGLIIGGKDLKHEAERINNINILVCTPGRLLQHMDETICFHATNLQMLVLDEAD 225
Query: 208 RLLREAYQAWLPTVLQ-LTRSDNENRFSDAST 238
R+L + + +++ L + FS T
Sbjct: 226 RILDMGFADTMNAIIENLPKKRQTLLFSATQT 257
>UNIPROTKB|Q8EBV7 [details] [associations]
symbol:SO_3388 "ATP-dependent RNA helicase DEAD box family"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
RefSeq:NP_718942.1 ProteinModelPortal:Q8EBV7 GeneID:1171066
KEGG:son:SO_3388 PATRIC:23526456 OMA:SHLVRSK ProtClustDB:CLSK907144
Uniprot:Q8EBV7
Length = 409
Score = 170 (64.9 bits), Expect = 1.8e-10, Sum P(2) = 1.8e-10
Identities = 51/147 (34%), Positives = 80/147 (54%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
L+ +L L +G P+QV E I L ++D+ + TG+GKT ++ALPI+Q L
Sbjct: 8 LNTQLVDTLAELGYQQPTPIQV----EAIPAILTKQDVMAGAQTGTGKTAAFALPILQLL 63
Query: 95 -----SNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELI 149
S+ A + +RALV++PTR+LALQV+ F A + VG+A G SI E + +
Sbjct: 64 MADNQSDHAAKAIRALVLVPTRELALQVQQSFVKYAKGTDIRVGIAYGGVSI--EAQQAV 121
Query: 150 KRPKLEAGICYDPEDVLQEL-QSAVDI 175
++ I P +L L Q A+++
Sbjct: 122 FNAGIDVLIA-TPGRLLDHLRQGALNL 147
Score = 132 (51.5 bits), Expect = 1.0e-05, P = 1.0e-05
Identities = 57/195 (29%), Positives = 85/195 (43%)
Query: 61 ETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDV 120
E I L ++D+ + TG+GKT ++ALPI+Q L A + R L L
Sbjct: 30 EAIPAILTKQDVMAGAQTGTGKTAAFALPILQLLMADNQSDHAAKAI---RALVL----- 81
Query: 121 FAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDV-LQE--LQSAVDILV 177
P L+ L V QS + + K + GI Y + Q+ + +D+L+
Sbjct: 82 ----VPTRELA--LQVQQSFV-----KYAKGTDIRVGIAYGGVSIEAQQAVFNAGIDVLI 130
Query: 178 ATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDAS 237
ATPGRL+DH+ L L LV DE DR+L + + VL+ + + A
Sbjct: 131 ATPGRLLDHLRQG-ALNLNQLNTLVFDEADRMLDMGFMDEIQAVLKQVPAQRQTLLFSA- 188
Query: 238 TFLPSAFGSLKTIRR 252
T S F K + R
Sbjct: 189 TLDDSIFSFSKNLLR 203
Score = 44 (20.5 bits), Expect = 1.8e-10, Sum P(2) = 1.8e-10
Identities = 19/102 (18%), Positives = 42/102 (41%)
Query: 255 VERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLIC 314
++ K P R ++ SATL ++ L P + + + +E
Sbjct: 170 IQAVLKQVPAQRQT-LLFSATLDDSIFSFSKNLLRDPKRIEVAKPNTTAAQ-IEQRVYAI 227
Query: 315 ESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFG 356
+S K ++ L++S ++ ++F+ + + +L LN G
Sbjct: 228 DSDRKTEFVSHLVRSKNWQQVLIFSRTKQGVDKLTAQLNKLG 269
>TIGR_CMR|SO_3388 [details] [associations]
symbol:SO_3388 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
RefSeq:NP_718942.1 ProteinModelPortal:Q8EBV7 GeneID:1171066
KEGG:son:SO_3388 PATRIC:23526456 OMA:SHLVRSK ProtClustDB:CLSK907144
Uniprot:Q8EBV7
Length = 409
Score = 170 (64.9 bits), Expect = 1.8e-10, Sum P(2) = 1.8e-10
Identities = 51/147 (34%), Positives = 80/147 (54%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
L+ +L L +G P+QV E I L ++D+ + TG+GKT ++ALPI+Q L
Sbjct: 8 LNTQLVDTLAELGYQQPTPIQV----EAIPAILTKQDVMAGAQTGTGKTAAFALPILQLL 63
Query: 95 -----SNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELI 149
S+ A + +RALV++PTR+LALQV+ F A + VG+A G SI E + +
Sbjct: 64 MADNQSDHAAKAIRALVLVPTRELALQVQQSFVKYAKGTDIRVGIAYGGVSI--EAQQAV 121
Query: 150 KRPKLEAGICYDPEDVLQEL-QSAVDI 175
++ I P +L L Q A+++
Sbjct: 122 FNAGIDVLIA-TPGRLLDHLRQGALNL 147
Score = 132 (51.5 bits), Expect = 1.0e-05, P = 1.0e-05
Identities = 57/195 (29%), Positives = 85/195 (43%)
Query: 61 ETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDV 120
E I L ++D+ + TG+GKT ++ALPI+Q L A + R L L
Sbjct: 30 EAIPAILTKQDVMAGAQTGTGKTAAFALPILQLLMADNQSDHAAKAI---RALVL----- 81
Query: 121 FAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDV-LQE--LQSAVDILV 177
P L+ L V QS + + K + GI Y + Q+ + +D+L+
Sbjct: 82 ----VPTRELA--LQVQQSFV-----KYAKGTDIRVGIAYGGVSIEAQQAVFNAGIDVLI 130
Query: 178 ATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDAS 237
ATPGRL+DH+ L L LV DE DR+L + + VL+ + + A
Sbjct: 131 ATPGRLLDHLRQG-ALNLNQLNTLVFDEADRMLDMGFMDEIQAVLKQVPAQRQTLLFSA- 188
Query: 238 TFLPSAFGSLKTIRR 252
T S F K + R
Sbjct: 189 TLDDSIFSFSKNLLR 203
Score = 44 (20.5 bits), Expect = 1.8e-10, Sum P(2) = 1.8e-10
Identities = 19/102 (18%), Positives = 42/102 (41%)
Query: 255 VERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLIC 314
++ K P R ++ SATL ++ L P + + + +E
Sbjct: 170 IQAVLKQVPAQRQT-LLFSATLDDSIFSFSKNLLRDPKRIEVAKPNTTAAQ-IEQRVYAI 227
Query: 315 ESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFG 356
+S K ++ L++S ++ ++F+ + + +L LN G
Sbjct: 228 DSDRKTEFVSHLVRSKNWQQVLIFSRTKQGVDKLTAQLNKLG 269
>UNIPROTKB|Q8EHT1 [details] [associations]
symbol:SO_1136 "ATP-dependent RNA helicase DEAD box family"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
RefSeq:NP_716761.1 ProteinModelPortal:Q8EHT1 GeneID:1168967
KEGG:son:SO_1136 PATRIC:23521912 OMA:IGAKENA ProtClustDB:CLSK869861
Uniprot:Q8EHT1
Length = 447
Score = 165 (63.1 bits), Expect = 1.9e-10, Sum P(2) = 1.9e-10
Identities = 62/200 (31%), Positives = 99/200 (49%)
Query: 58 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL--------SNRAVRCLR--ALVV 107
V Q I L RDL S TGSGKT ++ LP++Q L + ++V + ALV+
Sbjct: 42 VQQLAIPAILAGRDLLALSQTGSGKTFAFGLPLLQILWQQIAVQTTAKSVPAAKPLALVL 101
Query: 108 LPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQ 167
+PTR+LALQV + A+A + S L + +L L G+ + + L
Sbjct: 102 VPTRELALQVSEALHALASQLSTSAPLNI----------QL-----LCGGVALEQQ--LA 144
Query: 168 ELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRS 227
+L + ++VATPGRL+D + +L+ + +LV+DE DRLL + + ++ +
Sbjct: 145 DLSAKPQLVVATPGRLLDLCTQSH-ISLDAIKHLVLDEADRLLEMGFWPDMQKLMAMMPK 203
Query: 228 DNENRFSDASTFLPSAFGSL 247
+ A+ LP A SL
Sbjct: 204 RKQTLLFSAT--LPEALDSL 221
Score = 51 (23.0 bits), Expect = 1.9e-10, Sum P(2) = 1.9e-10
Identities = 27/106 (25%), Positives = 46/106 (43%)
Query: 270 MVLSATLTQDPNKLA-QLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQ 328
++ SATL + + LA +L + PL + TR + +E + K L+ALL+
Sbjct: 208 LLFSATLPEALDSLAGKLLTNDPLKVEAS-TRNAVVGEIEEQLYLVNKGSKAQALIALLK 266
Query: 329 SLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVR 374
+ +VF S+ + + L G I G + Q+VR
Sbjct: 267 QYQWPQVLVFISARDDADAIAKRLVKAG---INAAALHGEKDQTVR 309
>TIGR_CMR|SO_1136 [details] [associations]
symbol:SO_1136 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
RefSeq:NP_716761.1 ProteinModelPortal:Q8EHT1 GeneID:1168967
KEGG:son:SO_1136 PATRIC:23521912 OMA:IGAKENA ProtClustDB:CLSK869861
Uniprot:Q8EHT1
Length = 447
Score = 165 (63.1 bits), Expect = 1.9e-10, Sum P(2) = 1.9e-10
Identities = 62/200 (31%), Positives = 99/200 (49%)
Query: 58 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL--------SNRAVRCLR--ALVV 107
V Q I L RDL S TGSGKT ++ LP++Q L + ++V + ALV+
Sbjct: 42 VQQLAIPAILAGRDLLALSQTGSGKTFAFGLPLLQILWQQIAVQTTAKSVPAAKPLALVL 101
Query: 108 LPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQ 167
+PTR+LALQV + A+A + S L + +L L G+ + + L
Sbjct: 102 VPTRELALQVSEALHALASQLSTSAPLNI----------QL-----LCGGVALEQQ--LA 144
Query: 168 ELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRS 227
+L + ++VATPGRL+D + +L+ + +LV+DE DRLL + + ++ +
Sbjct: 145 DLSAKPQLVVATPGRLLDLCTQSH-ISLDAIKHLVLDEADRLLEMGFWPDMQKLMAMMPK 203
Query: 228 DNENRFSDASTFLPSAFGSL 247
+ A+ LP A SL
Sbjct: 204 RKQTLLFSAT--LPEALDSL 221
Score = 51 (23.0 bits), Expect = 1.9e-10, Sum P(2) = 1.9e-10
Identities = 27/106 (25%), Positives = 46/106 (43%)
Query: 270 MVLSATLTQDPNKLA-QLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQ 328
++ SATL + + LA +L + PL + TR + +E + K L+ALL+
Sbjct: 208 LLFSATLPEALDSLAGKLLTNDPLKVEAS-TRNAVVGEIEEQLYLVNKGSKAQALIALLK 266
Query: 329 SLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVR 374
+ +VF S+ + + L G I G + Q+VR
Sbjct: 267 QYQWPQVLVFISARDDADAIAKRLVKAG---INAAALHGEKDQTVR 309
>UNIPROTKB|E2RKU0 [details] [associations]
symbol:DDX28 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 CTD:55794 GeneTree:ENSGT00670000098028 OMA:LCSKGWK
EMBL:AAEX03004122 RefSeq:XP_546867.1 Ensembl:ENSCAFT00000032372
GeneID:489747 KEGG:cfa:489747 Uniprot:E2RKU0
Length = 527
Score = 176 (67.0 bits), Expect = 1.9e-10, P = 1.9e-10
Identities = 64/195 (32%), Positives = 98/195 (50%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
L+P + AL++ L P V TI P L R + + TGSGKTL Y LP++Q L
Sbjct: 129 LEPPVLRALKDAAPEVLRPTTVQ--SSTIPPLLRGRHILCAAETGSGKTLGYLLPLLQRL 186
Query: 95 SNR------AVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISEL 148
R + R LV++P+R+LA QV+ A+A +G+S+GL V + ++ +
Sbjct: 187 LGRPGLNPHSTPAPRGLVLVPSRELAEQVR----AVAQPLGISLGLRVRELGGGHGMNRI 242
Query: 149 IKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDR 208
R +L Q D+LVATPG L + + +L+ L +LV+DE D
Sbjct: 243 --RVQLSK-------------QPPADVLVATPGALWKALKSHL-VSLKQLSFLVLDEADT 286
Query: 209 LLREAYQAWLPTVLQ 223
LL E++ + +LQ
Sbjct: 287 LLDESFLELVDYILQ 301
>UNIPROTKB|F8WAJ0 [details] [associations]
symbol:DDX31 "Probable ATP-dependent RNA helicase DDX31"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
EMBL:AL354735 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
InterPro:IPR025313 Pfam:PF13959 EMBL:AL160165 HGNC:HGNC:16715
IPI:IPI01010837 ProteinModelPortal:F8WAJ0 SMR:F8WAJ0
Ensembl:ENST00000438527 ArrayExpress:F8WAJ0 Bgee:F8WAJ0
Uniprot:F8WAJ0
Length = 722
Score = 178 (67.7 bits), Expect = 1.9e-10, P = 1.9e-10
Identities = 84/299 (28%), Positives = 141/299 (47%)
Query: 57 AVWQETIGPGLFE-RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLAL 115
+V +++I P L E RD + S TGSGKTL+Y +P+VQ+L + + + + AL
Sbjct: 127 SVQKQSI-PVLLEGRDALVRSQTGSGKTLAYCIPVVQSL-----QAMESKIQRSDGPYAL 180
Query: 116 QVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKR-PKLEAGICYDPEDVLQE---LQS 171
+ P L++ QS D + +L+K + G+ E E L+
Sbjct: 181 -------VLVPTRELAL-----QSF--DTVQKLLKPFTWIVPGVLMGGEKRKSEKARLRK 226
Query: 172 AVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNEN 231
++IL++TPGRL+DHI +T+ L +LV DE DR+L ++ + +L ++ +
Sbjct: 227 GINILISTPGRLVDHIKSTKNIHFSRLRWLVFDEADRILDLGFEKDITVILNAVNAECQK 286
Query: 232 RFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQ-DPNKLAQLDLHH 290
R L SA T+ GV R + + VL + Q +P A ++
Sbjct: 287 R----QNVLLSA-----TLTE-GVTRLADISLHDPVSISVLDKSHDQLNPKDKAVQEVCP 336
Query: 291 PLFLTTGET--RYKLPERLESYKLICESKLKPLYLVA-LLQSLG---EEKCIVFTSSVE 343
P G+ + +PE L+ + + SKL+ + L A +LQ ++K +VF SS E
Sbjct: 337 P---PAGDKLDSFAIPESLKQHVTVVPSKLRLVCLAAFILQKCKFEEDQKMVVFFSSCE 392
>UNIPROTKB|J3KTB5 [details] [associations]
symbol:EIF4A1 "Eukaryotic initiation factor 4A-I"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR011545 Pfam:PF00270 PROSITE:PS00039
GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
EMBL:AC016876 HGNC:HGNC:3282 ChiTaRS:EIF4A1 Ensembl:ENST00000584860
Uniprot:J3KTB5
Length = 257
Score = 128 (50.1 bits), Expect = 2.0e-10, Sum P(2) = 2.0e-10
Identities = 30/102 (29%), Positives = 59/102 (57%)
Query: 57 AVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQ 116
A+ Q I P + D+ + +G+GKT ++A+ I+Q + ++ +ALV+ PTR+LA Q
Sbjct: 41 AIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIE-LDLKATQALVLAPTRELAQQ 99
Query: 117 VKDVFAAIAPAVGLSVGLAVGQSSIADEISEL-IKRPKLEAG 157
++ V A+ +G S +G +++ E+ +L ++ P + G
Sbjct: 100 IQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVG 141
Score = 82 (33.9 bits), Expect = 2.0e-10, Sum P(2) = 2.0e-10
Identities = 20/66 (30%), Positives = 37/66 (56%)
Query: 166 LQELQ-SAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQL 224
+Q+LQ A I+V TPGR+ D +N R + +++ V+DE D +L ++ + + Q
Sbjct: 128 VQKLQMEAPHIIVGTPGRVFDMLNR-RYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQK 186
Query: 225 TRSDNE 230
S+ +
Sbjct: 187 LNSNTQ 192
Score = 42 (19.8 bits), Expect = 2.7e-06, Sum P(2) = 2.7e-06
Identities = 13/45 (28%), Positives = 23/45 (51%)
Query: 255 VERGFKDKPYPRLVKM-------VLSATLTQDPNKLAQLDLHHPL 292
+ RGFKD+ Y K+ +LSAT+ D ++ + + P+
Sbjct: 172 LSRGFKDQIYDIFQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPI 216
>UNIPROTKB|E1BW15 [details] [associations]
symbol:DDX50 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003725
"double-stranded RNA binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0009615 "response to virus" evidence=IEA]
[GO:0043330 "response to exogenous dsRNA" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012562
Pfam:PF00270 Pfam:PF00271 Pfam:PF08152 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005730 GO:GO:0003725
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GO:GO:0043330 GeneTree:ENSGT00680000100003 OMA:EILCVAY
EMBL:AADN02028009 IPI:IPI00582179 Ensembl:ENSGALT00000006591
Uniprot:E1BW15
Length = 693
Score = 128 (50.1 bits), Expect = 2.0e-10, Sum P(2) = 2.0e-10
Identities = 34/83 (40%), Positives = 49/83 (59%)
Query: 43 LQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLS-----NR 97
LQ G++ LFPVQV +T P +D+ + TG+GKT S+A+P+++ L R
Sbjct: 128 LQARGVTYLFPVQV----KTFNPVYSGKDVIAQARTGTGKTFSFAIPLIEKLQADSQERR 183
Query: 98 AVRCLRALVVLPTRDLALQV-KD 119
R + LV+ PTR+LA QV KD
Sbjct: 184 RGRSPKVLVLAPTRELANQVAKD 206
Score = 97 (39.2 bits), Expect = 2.0e-10, Sum P(2) = 2.0e-10
Identities = 20/64 (31%), Positives = 40/64 (62%)
Query: 169 LQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLT-RS 227
++S +DILV TPGR+ DH+ + L + ++V+DE D++L + + +L++ +
Sbjct: 232 IRSGIDILVGTPGRIKDHLQNGK-LDLTKVKHVVLDEVDQMLDMGFAEQVEDILRVAYKK 290
Query: 228 DNEN 231
D+E+
Sbjct: 291 DSED 294
>UNIPROTKB|J3QL43 [details] [associations]
symbol:EIF4A1 "Eukaryotic initiation factor 4A-I"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR011545 Pfam:PF00270 PROSITE:PS00039
GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
EMBL:AC016876 HGNC:HGNC:3282 ChiTaRS:EIF4A1 Ensembl:ENST00000584784
Uniprot:J3QL43
Length = 271
Score = 128 (50.1 bits), Expect = 2.2e-10, Sum P(2) = 2.2e-10
Identities = 30/102 (29%), Positives = 59/102 (57%)
Query: 57 AVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQ 116
A+ Q I P + D+ + +G+GKT ++A+ I+Q + ++ +ALV+ PTR+LA Q
Sbjct: 57 AIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIE-LDLKATQALVLAPTRELAQQ 115
Query: 117 VKDVFAAIAPAVGLSVGLAVGQSSIADEISEL-IKRPKLEAG 157
++ V A+ +G S +G +++ E+ +L ++ P + G
Sbjct: 116 IQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVG 157
Score = 83 (34.3 bits), Expect = 2.2e-10, Sum P(2) = 2.2e-10
Identities = 20/70 (28%), Positives = 38/70 (54%)
Query: 166 LQELQ-SAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQL 224
+Q+LQ A I+V TPGR+ D +N R + +++ V+DE D +L ++ + + Q
Sbjct: 144 VQKLQMEAPHIIVGTPGRVFDMLNR-RYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQK 202
Query: 225 TRSDNENRFS 234
S+ + +
Sbjct: 203 LNSNTQEELT 212
>UNIPROTKB|F1NTK9 [details] [associations]
symbol:DDX54 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003714 "transcription corepressor
activity" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0006396 "RNA processing" evidence=IEA] [GO:0030331 "estrogen
receptor binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012541
Pfam:PF00270 Pfam:PF00271 Pfam:PF08147 ProDom:PD024971
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003714 GO:GO:0005730 GO:GO:0003723 GO:GO:0006396
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00550000075100
EMBL:AADN02043183 IPI:IPI00582285 ProteinModelPortal:F1NTK9
Ensembl:ENSGALT00000012108 Uniprot:F1NTK9
Length = 822
Score = 130 (50.8 bits), Expect = 2.4e-10, Sum P(2) = 2.4e-10
Identities = 32/103 (31%), Positives = 52/103 (50%)
Query: 52 FPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTR 111
+ V + ++TI L RD+ + TGSGKT + LP+ + L + RAL++ PTR
Sbjct: 56 YKVPTPIQRKTIPVILRGRDVVAMARTGSGKTACFLLPMFERLKAPSPSGARALILSPTR 115
Query: 112 DLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKL 154
+LALQ + GL L +G + D+ + L + P +
Sbjct: 116 ELALQTLKFTKELGKFTGLKTALVLGGDKMEDQFAALHENPDI 158
Score = 96 (38.9 bits), Expect = 2.4e-10, Sum P(2) = 2.4e-10
Identities = 22/60 (36%), Positives = 31/60 (51%)
Query: 163 EDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVL 222
ED L DI++ATPGRL+ H+ L+ + Y+V DE DRL + L +L
Sbjct: 146 EDQFAALHENPDIIIATPGRLV-HVAVEMNLKLQSVEYVVFDEADRLFEMGFAEQLQEIL 204
>UNIPROTKB|Q9H8H2 [details] [associations]
symbol:DDX31 "Probable ATP-dependent RNA helicase DDX31"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
EMBL:AL354735 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959 KO:K14806
EMBL:AF427339 EMBL:AF335567 EMBL:AF335568 EMBL:AF335569
EMBL:AK023695 EMBL:AK027002 EMBL:AK027484 EMBL:AL160165
EMBL:BC012726 IPI:IPI00043990 IPI:IPI00291296 IPI:IPI00552374
IPI:IPI00552716 RefSeq:NP_073616.6 RefSeq:NP_619526.1
UniGene:Hs.660767 ProteinModelPortal:Q9H8H2 SMR:Q9H8H2
IntAct:Q9H8H2 PhosphoSite:Q9H8H2 DMDM:71153334 SWISS-2DPAGE:Q9H8H2
PaxDb:Q9H8H2 PRIDE:Q9H8H2 DNASU:64794 Ensembl:ENST00000310532
Ensembl:ENST00000372153 Ensembl:ENST00000372155
Ensembl:ENST00000372159 GeneID:64794 KEGG:hsa:64794 UCSC:uc004cbq.1
UCSC:uc004cbs.2 UCSC:uc010mzu.1 CTD:64794 GeneCards:GC09M135468
HGNC:HGNC:16715 HPA:HPA020891 neXtProt:NX_Q9H8H2 PharmGKB:PA27218
HOVERGEN:HBG103793 InParanoid:Q9H8H2 OMA:ARIGCHG OrthoDB:EOG42V8FK
PhylomeDB:Q9H8H2 GenomeRNAi:64794 NextBio:66862 ArrayExpress:Q9H8H2
Bgee:Q9H8H2 CleanEx:HS_DDX31 Genevestigator:Q9H8H2
GermOnline:ENSG00000125485 Uniprot:Q9H8H2
Length = 851
Score = 178 (67.7 bits), Expect = 2.5e-10, P = 2.5e-10
Identities = 84/299 (28%), Positives = 141/299 (47%)
Query: 57 AVWQETIGPGLFE-RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLAL 115
+V +++I P L E RD + S TGSGKTL+Y +P+VQ+L + + + + AL
Sbjct: 256 SVQKQSI-PVLLEGRDALVRSQTGSGKTLAYCIPVVQSL-----QAMESKIQRSDGPYAL 309
Query: 116 QVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKR-PKLEAGICYDPEDVLQE---LQS 171
+ P L++ QS D + +L+K + G+ E E L+
Sbjct: 310 -------VLVPTRELAL-----QSF--DTVQKLLKPFTWIVPGVLMGGEKRKSEKARLRK 355
Query: 172 AVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNEN 231
++IL++TPGRL+DHI +T+ L +LV DE DR+L ++ + +L ++ +
Sbjct: 356 GINILISTPGRLVDHIKSTKNIHFSRLRWLVFDEADRILDLGFEKDITVILNAVNAECQK 415
Query: 232 RFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQ-DPNKLAQLDLHH 290
R L SA T+ GV R + + VL + Q +P A ++
Sbjct: 416 R----QNVLLSA-----TLTE-GVTRLADISLHDPVSISVLDKSHDQLNPKDKAVQEVCP 465
Query: 291 PLFLTTGET--RYKLPERLESYKLICESKLKPLYLVA-LLQSLG---EEKCIVFTSSVE 343
P G+ + +PE L+ + + SKL+ + L A +LQ ++K +VF SS E
Sbjct: 466 P---PAGDKLDSFAIPESLKQHVTVVPSKLRLVCLAAFILQKCKFEEDQKMVVFFSSCE 521
>POMBASE|SPBC24C6.02 [details] [associations]
symbol:SPBC24C6.02 "ATP-dependent RNA helicase Spb4
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISO] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005730 "nucleolus" evidence=ISO;IDA] [GO:0006364 "rRNA
processing" evidence=ISO] [GO:0042254 "ribosome biogenesis"
evidence=ISS] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
PomBase:SPBC24C6.02 GO:GO:0005524 GO:GO:0005730 EMBL:CU329671
GenomeReviews:CU329671_GR GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
InterPro:IPR025313 Pfam:PF13959 HOGENOM:HOG000268803 KO:K14809
OMA:CACVEYW OrthoDB:EOG46MFT3 PIR:T39966 RefSeq:NP_595956.1
ProteinModelPortal:O74764 STRING:O74764 EnsemblFungi:SPBC24C6.02.1
GeneID:2540598 KEGG:spo:SPBC24C6.02 NextBio:20801723 Uniprot:O74764
Length = 606
Score = 158 (60.7 bits), Expect = 2.5e-10, Sum P(2) = 2.5e-10
Identities = 62/220 (28%), Positives = 101/220 (45%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
+D LK A+ G + PVQ I L +DL + + TGSGKTL+Y LP +
Sbjct: 8 IDKWLKNAVAAQGFKKMTPVQA----NAIPLFLKNKDLVVEAVTGSGKTLAYLLPCFDKV 63
Query: 95 SNRAV--RCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRP 152
+ R L AL+V PTR+LA Q+ +V + LA S+ D +L+
Sbjct: 64 TRRDTDETGLGALIVAPTRELATQIFNVTKEL---------LAYQPDSL-DGGKKLVADM 113
Query: 153 KLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLRE 212
+ G D+ + +++ TPGRL + ++ + +HL L++DE D L+
Sbjct: 114 YI-GGKGTLTNDLASFREKNPSVVIGTPGRLNEMLSH---ISSKHLEILILDEADTLIDM 169
Query: 213 AYQAWLPTVL-QLTRSDNENRFSDASTFLPSAFGSLKTIR 251
+Q L +++ QL + FS S+F + +R
Sbjct: 170 GFQRTLQSIISQLPKQRRTGLFSATMNDTVSSFLKIAGLR 209
Score = 62 (26.9 bits), Expect = 2.5e-10, Sum P(2) = 2.5e-10
Identities = 29/109 (26%), Positives = 49/109 (44%)
Query: 271 VLSATLTQDPNKLAQL-DLHHPLFLTTGETRYKLPERLESYKLICESKLKPLY----LVA 325
+ SAT+ + ++ L + + ++ T K+ R S I + P+Y ++
Sbjct: 190 LFSATMNDTVSSFLKIAGLRNSVRVSVTVTSKKIDTRTPSSLAIQSLVIPPIYKVQCMIH 249
Query: 326 LLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVR 374
LL ++ EK IVF SS S +L + +L +I G Q QS R
Sbjct: 250 LLCTIEYEKAIVFFSSCASVEYFNSLFLTY-KLPFEIVALHGQQVQSNR 297
>FB|FBgn0034496 [details] [associations]
symbol:CG9143 species:7227 "Drosophila melanogaster"
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0004004 "ATP-dependent
RNA helicase activity" evidence=ISS] [GO:0005524 "ATP binding"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 EMBL:AE013599
GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HSSP:P10081 KO:K14805 GeneTree:ENSGT00550000074847
OMA:DAYLYYI EMBL:BT010296 RefSeq:NP_611467.1 UniGene:Dm.22095
SMR:Q6NQY9 STRING:Q6NQY9 EnsemblMetazoa:FBtr0086304 GeneID:37296
KEGG:dme:Dmel_CG9143 UCSC:CG9143-RA FlyBase:FBgn0034496
InParanoid:Q6NQY9 OrthoDB:EOG4VQ84N GenomeRNAi:37296 NextBio:802980
Uniprot:Q6NQY9
Length = 813
Score = 134 (52.2 bits), Expect = 2.9e-10, Sum P(3) = 2.9e-10
Identities = 48/185 (25%), Positives = 89/185 (48%)
Query: 169 LQSAVDILVATPGRLMD-HINATRGF-TLEHLCYLVVDETDRLLREAYQAWLPTVLQLTR 226
L+ DI+VATPGRL + + R +E + +LV+DETDR++ + + L ++L++
Sbjct: 387 LRQCPDIVVATPGRLWELYAQGNRHLGKIEDVSFLVIDETDRMVEKGHFEELRSLLKVLN 446
Query: 227 SDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQL 286
SD + + F+ SA +L +++ K P+ VK + + + + +L
Sbjct: 447 SDEQKKHQ-RQNFVYSATLTLVHDLPDHMQKRNVGKR-PKFVKQTVDQKIE---SLIEEL 501
Query: 287 DLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTH 346
+ P + ++ ES +L+C K +L +Q + IVF +S++
Sbjct: 502 GISQPKIVDITSSQQTAQTLTES-RLLCPIDHKDYHLYYFIQR-HPGRTIVFCNSIDCVK 559
Query: 347 RLCTL 351
RL TL
Sbjct: 560 RLATL 564
Score = 74 (31.1 bits), Expect = 2.9e-10, Sum P(3) = 2.9e-10
Identities = 19/53 (35%), Positives = 29/53 (54%)
Query: 102 LRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKL 154
L LV+ PTR+LA+QVK+ A A G+ V G ++A + L + P +
Sbjct: 341 LYGLVLTPTRELAVQVKNHLVAAAKYTGIRVAAIFGGLAVAKQERVLRQCPDI 393
Score = 57 (25.1 bits), Expect = 2.9e-10, Sum P(3) = 2.9e-10
Identities = 12/35 (34%), Positives = 22/35 (62%)
Query: 69 ERDLCINSPTGSGKTLSYALPI---VQTLSNRAVR 100
++D+ + TGSGKTL++ +P+ + L R +R
Sbjct: 253 KKDILGAAETGSGKTLAFGIPMLAGIMELKQRNIR 287
>UNIPROTKB|Q4K4H4 [details] [associations]
symbol:rhlE_2 "Putative ATP-dependent RNA helicase"
species:220664 "Pseudomonas protegens Pf-5" [GO:0006139
"nucleobase-containing compound metabolic process" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0006139 GO:GO:0003676
EMBL:CP000076 GenomeReviews:CP000076_GR InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807 KO:K11927
OMA:DGDLMGF ProtClustDB:CLSK865855 RefSeq:YP_262859.1
ProteinModelPortal:Q4K4H4 GeneID:3480173 KEGG:pfl:PFL_5801
PATRIC:19881109 BioCyc:PFLU220664:GIX8-5841-MONOMER Uniprot:Q4K4H4
Length = 622
Score = 154 (59.3 bits), Expect = 3.0e-10, Sum P(2) = 3.0e-10
Identities = 68/214 (31%), Positives = 95/214 (44%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
L L A++ G + PVQ Q I L RDL + + TG+GKT +ALPI++ L
Sbjct: 8 LSEALVGAIEAAGYTQPTPVQ----QRAIPAVLQGRDLMVAAQTGTGKTGGFALPILERL 63
Query: 95 --------SNR-AVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEI 145
S R R R LV+ PTR+LA QV D F A + G
Sbjct: 64 FPNGHPDKSQRHGPRQPRVLVLTPTRELAAQVHDSFKLYARDLKFVSACIFG-------- 115
Query: 146 SELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDE 205
G+ +P+ +Q + VD+LVA PGRL+D + L H+ LV+DE
Sbjct: 116 -----------GVGMNPQ--VQAMARGVDVLVACPGRLLD-LAGQGSVDLSHVEILVLDE 161
Query: 206 TDRLLREAYQAWLPTVLQLTRSDNENRFSDASTF 239
DR+L + + VL + +N A TF
Sbjct: 162 ADRMLDMGFVHDVKKVLARLPAKRQNLLFSA-TF 194
Score = 66 (28.3 bits), Expect = 3.0e-10, Sum P(2) = 3.0e-10
Identities = 25/89 (28%), Positives = 41/89 (46%)
Query: 270 MVLSATLTQDPNKLAQLDLHHP--LFLTTGETRYKLPERLESYKLICESKLKPLYLVALL 327
++ SAT ++D LA LH+P + +T T ER+E + K L L+
Sbjct: 188 LLFSATFSKDITDLAGKLLHNPERIEVTPPNTTV---ERIEQRVFRLPASHKRALLAHLI 244
Query: 328 QSLGEEKCIVFTSSVESTHRLCTLLNHFG 356
+ E+ +VFT + +RL L+ G
Sbjct: 245 TAGAWEQVLVFTRTKHGANRLAEYLDKHG 273
>UNIPROTKB|J9NU36 [details] [associations]
symbol:EIF4A1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 GeneTree:ENSGT00530000062880 EMBL:AAEX03006506
EMBL:AAEX03006505 Ensembl:ENSCAFT00000049437 Uniprot:J9NU36
Length = 423
Score = 134 (52.2 bits), Expect = 3.6e-10, Sum P(2) = 3.6e-10
Identities = 46/164 (28%), Positives = 81/164 (49%)
Query: 1 MEEAKKKSMPVLPWM-RSPVD-----VSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPV 54
+++ KKK P LPW R V + E P PC PR + G + P
Sbjct: 18 LKQKKKKEKP-LPWSSRLAVRKRKAWTAEPEPPPSRRGPCGLPRTSPT-EGGGAGPIPPT 75
Query: 55 QVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLA 114
+ Q I P + D+ + +G+GKT ++A+ I+Q + ++ +ALV+ PTR+LA
Sbjct: 76 R----QRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIE-LDLKATQALVLAPTRELA 130
Query: 115 LQVKDVFAAIAPAVGLSVGLAVGQSSIADEISEL-IKRPKLEAG 157
Q++ V A+ +G S +G +++ E+ +L ++ P + G
Sbjct: 131 QQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVG 174
Score = 82 (33.9 bits), Expect = 3.6e-10, Sum P(2) = 3.6e-10
Identities = 20/66 (30%), Positives = 37/66 (56%)
Query: 166 LQELQ-SAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQL 224
+Q+LQ A I+V TPGR+ D +N R + +++ V+DE D +L ++ + + Q
Sbjct: 161 VQKLQMEAPHIIVGTPGRVFDMLNR-RYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQK 219
Query: 225 TRSDNE 230
S+ +
Sbjct: 220 LNSNTQ 225
Score = 46 (21.3 bits), Expect = 1.8e-06, Sum P(2) = 1.8e-06
Identities = 20/94 (21%), Positives = 42/94 (44%)
Query: 255 VERGFKDKPYPRLVKM-------VLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERL 307
+ RGFKD+ Y K+ +LSAT+ D ++ + + P+ + + L
Sbjct: 205 LSRGFKDQIYDIFQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIR 264
Query: 308 ESYKLICESKLKPLYLVALLQSLGEEKCIVFTSS 341
+ Y + + K L L ++L + ++F ++
Sbjct: 265 QFYINVEREEWKLDTLCDLYETLTITQAVIFINT 298
>RGD|1562539 [details] [associations]
symbol:Ddx54 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 54"
species:10116 "Rattus norvegicus" [GO:0003714 "transcription
corepressor activity" evidence=ISO] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=ISO] [GO:0005102 "receptor binding" evidence=ISO]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA;ISO] [GO:0005730 "nucleolus" evidence=ISO] [GO:0006396
"RNA processing" evidence=ISO] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0016070 "RNA metabolic process"
evidence=ISO] [GO:0030331 "estrogen receptor binding" evidence=ISO]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012541 Pfam:PF00270 Pfam:PF00271 Pfam:PF08147
ProDom:PD024971 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
RGD:1562539 GO:GO:0005524 GO:GO:0003714 GO:GO:0005730 GO:GO:0003723
GO:GO:0006396 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00550000075100 IPI:IPI00193685
Ensembl:ENSRNOT00000001859 UCSC:RGD:1562539 OrthoDB:EOG469QTB
Uniprot:D3ZHY6
Length = 906
Score = 131 (51.2 bits), Expect = 3.8e-10, Sum P(2) = 3.8e-10
Identities = 32/104 (30%), Positives = 54/104 (51%)
Query: 52 FPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRC-LRALVVLPT 110
+ V + ++TI L +D+ + TGSGKT + LP+ + L R+ + RAL++ PT
Sbjct: 115 YKVPTPIQRKTIPVILDGKDVVAMARTGSGKTACFLLPMFERLKARSAQTGARALILSPT 174
Query: 111 RDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKL 154
R+LALQ + GL L +G + D+ + L + P +
Sbjct: 175 RELALQTMKFTKELGKFTGLKTALILGGDKMEDQFAALHENPDI 218
Score = 94 (38.1 bits), Expect = 3.8e-10, Sum P(2) = 3.8e-10
Identities = 21/60 (35%), Positives = 31/60 (51%)
Query: 163 EDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVL 222
ED L DI++ATPGRL+ H+ L+ + Y+V DE DRL + L ++
Sbjct: 206 EDQFAALHENPDIIIATPGRLV-HVAVEMNLKLQSVEYVVFDEADRLFEMGFAEQLQEII 264
>UNIPROTKB|F1NM06 [details] [associations]
symbol:DDX31 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
GeneTree:ENSGT00550000075041 OMA:ARIGCHG EMBL:AADN02026504
EMBL:AADN02026505 EMBL:AADN02026506 EMBL:AADN02026507
EMBL:AADN02026508 EMBL:AADN02026509 EMBL:AADN02026510
IPI:IPI00573288 ProteinModelPortal:F1NM06
Ensembl:ENSGALT00000005588 Uniprot:F1NM06
Length = 690
Score = 175 (66.7 bits), Expect = 3.9e-10, P = 3.9e-10
Identities = 89/333 (26%), Positives = 151/333 (45%)
Query: 57 AVWQETIGPGLFE-RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLAL 115
+V ++TI P L + +D + S TGSGKTL+Y +P+VQ+L + R+ AL
Sbjct: 122 SVQKQTI-PVLLQGKDALVRSQTGSGKTLAYGIPLVQSLQGMQSKIQRS-----DGPYAL 175
Query: 116 QVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKR-PKLEAGICYDPEDVLQE---LQS 171
+ P L++ Q+ D I +L+K + G+ E E L+
Sbjct: 176 -------VLVPTRELAL-----QTF--DTIQKLLKPFTWIVPGVLMGGEKRKSEKARLRK 221
Query: 172 AVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNEN 231
++IL++TPGRL+DHI +T +L++DE DR+L ++ + +L ++ E
Sbjct: 222 GINILISTPGRLVDHIKSTECIHFRRTQWLIIDEADRILDLGFEKDVTVILNALNAERET 281
Query: 232 RFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLH-H 290
R L SA T+ GV R D +++ ++ + + Q + +
Sbjct: 282 R----QNVLLSA-----TLTE-GVTR-LADISLNDPIRISIADEIRESLKPALQTEKEAN 330
Query: 291 PLFLTTGETRYKLPERLESYKLICESKLKPLYLVA-LLQSLGEEK---CIVFTSSVESTH 346
+ + +PE+L+ Y ++ SKL+ + L A +L+ EK I+F SS E
Sbjct: 331 SSSNRMDQENFAVPEKLKQYFMMVPSKLRLVTLAAFVLEKCKYEKQHKMIIFFSSCEQVE 390
Query: 347 RLCTLLNHF--GELRI---KIKEYSGLQRQSVR 374
LL + GEL K S +Q Q +R
Sbjct: 391 FHYELLVNVLSGELESEQPKRSSVSSVQLQFLR 423
>UNIPROTKB|E2RB54 [details] [associations]
symbol:DDX52 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00550000074863 OMA:ERESINT
EMBL:AAEX03006616 Ensembl:ENSCAFT00000028820 Uniprot:E2RB54
Length = 601
Score = 139 (54.0 bits), Expect = 3.9e-10, Sum P(3) = 3.9e-10
Identities = 35/118 (29%), Positives = 63/118 (53%)
Query: 28 PLDHLPCLDPRLKV---ALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTL 84
P+ LD K+ LQN+ + + F + + I L R+L ++PTGSGKTL
Sbjct: 161 PIATFQQLDQEYKINSRLLQNI-LDAGFQTPTPIQMQAIPVMLHGRELLASAPTGSGKTL 219
Query: 85 SYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIA 142
++++PI+ L + RAL++ PTR+LA Q+ I+ G + + + ++++A
Sbjct: 220 AFSIPILMQLKQPTNKGFRALIISPTRELANQIHRELVKISEGTGFRIHM-IHKAAVA 276
Score = 69 (29.3 bits), Expect = 3.9e-10, Sum P(3) = 3.9e-10
Identities = 22/70 (31%), Positives = 35/70 (50%)
Query: 174 DILVATPGRLMDHINATR-GFTLEHLCYLVVDETDRLLREA---YQAWLPTVLQLTRSDN 229
DILV TP RL+ + G L + +LVVDE+D+L + ++ L ++ S
Sbjct: 289 DILVTTPNRLIYLLKQDPPGIDLTSVEWLVVDESDKLFEDGKTGFRDQLASIFLACTSHK 348
Query: 230 ENRFSDASTF 239
R ++TF
Sbjct: 349 VRRAMFSATF 358
Score = 50 (22.7 bits), Expect = 3.9e-10, Sum P(3) = 3.9e-10
Identities = 20/81 (24%), Positives = 34/81 (41%)
Query: 269 KMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQ 328
+ + SAT D + +L+L + + ++ G R E +E L S+ L + L
Sbjct: 351 RAMFSATFAYDVEQWCKLNLDNVITVSIG-ARNSAVETVEQELLFVGSETGKLLAMRELV 409
Query: 329 SLG-EEKCIVFTSSVESTHRL 348
G +VF S+E L
Sbjct: 410 KKGFNPPVLVFVQSIERAKEL 430
>MGI|MGI:1924841 [details] [associations]
symbol:Ddx10 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 10"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0016787 "hydrolase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 MGI:MGI:1924841 GO:GO:0005524
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K14776 InterPro:IPR025313 Pfam:PF13959 HOGENOM:HOG000268801
GeneTree:ENSGT00550000074980 CTD:1662 HOVERGEN:HBG102756
OrthoDB:EOG4BK536 OMA:ADKVIEP ChiTaRS:DDX10 EMBL:BC049261
IPI:IPI00896604 RefSeq:NP_084212.2 UniGene:Mm.133560
ProteinModelPortal:Q80Y44 SMR:Q80Y44 STRING:Q80Y44
PhosphoSite:Q80Y44 PaxDb:Q80Y44 PRIDE:Q80Y44
Ensembl:ENSMUST00000065630 GeneID:77591 KEGG:mmu:77591
UCSC:uc009plz.2 InParanoid:Q80Y44 NextBio:347162 Bgee:Q80Y44
CleanEx:MM_DDX10 Genevestigator:Q80Y44
GermOnline:ENSMUSG00000053289 Uniprot:Q80Y44
Length = 875
Score = 121 (47.7 bits), Expect = 4.1e-10, Sum P(2) = 4.1e-10
Identities = 34/119 (28%), Positives = 60/119 (50%)
Query: 58 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSN---RAVRCLRALVVLPTRDLA 114
+ ++TIG L +D+ + TGSGKTL++ +P+++ L + L L++ PTR+LA
Sbjct: 95 IQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLEALYRLQWTSTDGLGVLIISPTRELA 154
Query: 115 LQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAV 173
Q +V + S GL +G + E +E I + +C P +LQ + +
Sbjct: 155 YQTFEVLRKVGKNHDFSAGLIIGGKDLKHE-AERINN--INILVC-TPGRLLQHMDETI 209
Score = 104 (41.7 bits), Expect = 4.1e-10, Sum P(2) = 4.1e-10
Identities = 38/109 (34%), Positives = 54/109 (49%)
Query: 270 MVLSATLTQDPNKLAQLDLHHPLFLTTGE-TRYKLPERLESYKLICESKLKPLYLVALLQ 328
++ SAT T+ LA+L L P ++ E +Y P LE +ICE K L + L+
Sbjct: 250 LLFSATQTKSVKDLARLSLKDPEYVWVHEKAKYSTPATLEQNYIICELHQKISVLFSFLR 309
Query: 329 SLGEEKCIVFTSSVESTHRLCTLLNHFGELR--IKIKEYSGLQRQSVRR 375
S ++K IVF SS + L + F LR I I G Q+Q +RR
Sbjct: 310 SHLKKKSIVFFSSCKEVQYLYRV---FCRLRPGISILALHGRQQQ-MRR 354
Score = 104 (41.7 bits), Expect = 3.1e-08, Sum P(2) = 3.1e-08
Identities = 28/92 (30%), Positives = 47/92 (51%)
Query: 150 KRPKLEAGICYDPEDVLQELQ--SAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETD 207
K AG+ +D+ E + + ++ILV TPGRL+ H++ T F +L LV+DE D
Sbjct: 166 KNHDFSAGLIIGGKDLKHEAERINNINILVCTPGRLLQHMDETICFHATNLQMLVLDEAD 225
Query: 208 RLLREAYQAWLPTVLQ-LTRSDNENRFSDAST 238
R+L + + +++ L + FS T
Sbjct: 226 RILDMGFADTMNAIIENLPKKRQTLLFSATQT 257
>POMBASE|SPAC1F7.02c [details] [associations]
symbol:has1 "ATP-dependent RNA helicase Has1
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=ISO] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISO] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0006364 "rRNA processing" evidence=ISO]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 PomBase:SPAC1F7.02c GO:GO:0005524 EMBL:CU329670
GO:GO:0005730 GenomeReviews:CU329670_GR GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
InterPro:IPR025313 Pfam:PF13959 HOGENOM:HOG000268799 KO:K13179
OMA:KDGYRSY OrthoDB:EOG4ZKNVS PIR:S62574 RefSeq:NP_594488.1
ProteinModelPortal:Q09916 STRING:Q09916 EnsemblFungi:SPAC1F7.02c.1
GeneID:2541668 KEGG:spo:SPAC1F7.02c NextBio:20802761 Uniprot:Q09916
Length = 578
Score = 137 (53.3 bits), Expect = 4.4e-10, Sum P(2) = 4.4e-10
Identities = 26/71 (36%), Positives = 45/71 (63%)
Query: 168 ELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRS 227
+L V++LVATPGRL+DH+ T+GF +L LV+DE DR+L ++ + ++++ S
Sbjct: 207 KLVKGVNLLVATPGRLLDHLQNTKGFVFRNLRSLVIDEADRILEIGFEDEMRQIMKILPS 266
Query: 228 DNENRFSDAST 238
+N ++T
Sbjct: 267 ENRQTLLFSAT 277
Score = 121 (47.7 bits), Expect = 2.7e-08, Sum P(2) = 2.7e-08
Identities = 37/140 (26%), Positives = 70/140 (50%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQ-- 92
L ++ A++ MG ++ +Q + +I P L RD+ + TGSGKTL++ +P ++
Sbjct: 96 LSENIQKAIKEMGFETMTEIQ----KRSIPPLLAGRDVLGAAKTGSGKTLAFLIPTIEML 151
Query: 93 -TLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKR 151
L + +++ PTR+LALQ+ V + + G+ +G ++ E +L+K
Sbjct: 152 YALKFKPRNGTGVIIISPTRELALQIFGVAKELLKYHHQTFGIVIGGANRRAEADKLVKG 211
Query: 152 PKLEAGICYDPEDVLQELQS 171
L + P +L LQ+
Sbjct: 212 VNL---LVATPGRLLDHLQN 228
Score = 82 (33.9 bits), Expect = 4.4e-10, Sum P(2) = 4.4e-10
Identities = 30/107 (28%), Positives = 52/107 (48%)
Query: 270 MVLSATLTQDPNKLAQLDLHH-PLFLTTGETR-YKLPERLESYKLICESKLKPLYLVALL 327
++ SAT T LA++ L PL++ + E LE ++ +S + L L + L
Sbjct: 272 LLFSATQTTKVEDLARISLKPGPLYVNVDSGKPTSTVEGLEQGYVVVDSDKRFLLLFSFL 331
Query: 328 QSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVR 374
+ ++K IVF SS S + LLN+ + + + + G Q+Q R
Sbjct: 332 KRNLKKKVIVFMSSCASVKYMAELLNY---IDLPVLDLHGKQKQQRR 375
>FB|FBgn0035720 [details] [associations]
symbol:CG10077 species:7227 "Drosophila melanogaster"
[GO:0003724 "RNA helicase activity" evidence=ISS] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005875 "microtubule associated complex"
evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005875
EMBL:AE014296 GO:GO:0006200 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 GO:GO:0003724
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0016779 KO:K12823
GeneTree:ENSGT00660000095174 HSSP:P10081 UniGene:Dm.7301
GeneID:38756 KEGG:dme:Dmel_CG10077 FlyBase:FBgn0035720
ChiTaRS:CG10077 GenomeRNAi:38756 NextBio:810234 EMBL:AY102660
RefSeq:NP_648062.2 SMR:Q8MZI3 IntAct:Q8MZI3 MINT:MINT-863686
STRING:Q8MZI3 EnsemblMetazoa:FBtr0076940 EnsemblMetazoa:FBtr0333083
UCSC:CG10077-RA InParanoid:Q8MZI3 OMA:WRACAIH Uniprot:Q8MZI3
Length = 818
Score = 118 (46.6 bits), Expect = 4.4e-10, Sum P(3) = 4.4e-10
Identities = 25/65 (38%), Positives = 42/65 (64%)
Query: 167 QELQSAVDILVATPGRLMDHINATRGFT-LEHLCYLVVDETDRLLREAYQAWLPTVLQLT 225
++L+ V+I++ATPGRL+D + RG T L+ YLV+DE DR+L ++ + ++Q
Sbjct: 275 RDLERGVEIVIATPGRLIDFLE--RGTTSLKRCTYLVLDEADRMLDMGFEPQIRKIMQQI 332
Query: 226 RSDNE 230
R D +
Sbjct: 333 RPDRQ 337
Score = 99 (39.9 bits), Expect = 4.4e-10, Sum P(3) = 4.4e-10
Identities = 27/56 (48%), Positives = 36/56 (64%)
Query: 70 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLR-----ALVVLPTRDLALQVKDV 120
RDL + TGSGKTL+Y LP V ++N+ R R ALV+ PTR+LA Q++ V
Sbjct: 195 RDLVGVAQTGSGKTLAYVLPAVVHINNQP-RLERGDGPIALVLAPTRELAQQIQQV 249
Score = 48 (22.0 bits), Expect = 4.4e-10, Sum P(3) = 4.4e-10
Identities = 16/75 (21%), Positives = 34/75 (45%)
Query: 270 MVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQS 329
++ SAT ++ +LA+ L++ + + G + +C+ K + L+ LL
Sbjct: 339 LMWSATWPKEVRQLAEEFLNNYIQVNIGSLSLSANHNILQIVDVCDENEKLMKLIKLLTD 398
Query: 330 LGEE---KCIVFTSS 341
+ E K I+F +
Sbjct: 399 ISAENETKTIIFVET 413
>SGD|S000002602 [details] [associations]
symbol:MSS116 "DEAD-box protein involved splicing of
mitochondrial introns" species:4932 "Saccharomyces cerevisiae"
[GO:0000373 "Group II intron splicing" evidence=IMP;IDA]
[GO:0003723 "RNA binding" evidence=IEA;IDA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0006417 "regulation of translation" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=IEA;IDA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005759
"mitochondrial matrix" evidence=IEA;IMP] [GO:0004004 "ATP-dependent
RNA helicase activity" evidence=IDA] [GO:0000372 "Group I intron
splicing" evidence=IMP] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0034337 "RNA folding" evidence=IMP] [GO:0033592
"RNA strand annealing activity" evidence=IDA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 SGD:S000002602
GO:GO:0005524 GO:GO:0006417 GO:GO:0005759 GO:GO:0006397
EMBL:BK006938 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 EMBL:Z48784 GO:GO:0000373 GO:GO:0000372
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00700000105515 GO:GO:0033592 OrthoDB:EOG437VPN
PIR:S02116 RefSeq:NP_010480.1 PDB:3I5X PDB:3I5Y PDB:3I61 PDB:3I62
PDB:3SQW PDB:3SQX PDB:4DB2 PDB:4DB4 PDBsum:3I5X PDBsum:3I5Y
PDBsum:3I61 PDBsum:3I62 PDBsum:3SQW PDBsum:3SQX PDBsum:4DB2
PDBsum:4DB4 ProteinModelPortal:P15424 SMR:P15424 DIP:DIP-5368N
IntAct:P15424 MINT:MINT-525340 STRING:P15424 PaxDb:P15424
PeptideAtlas:P15424 EnsemblFungi:YDR194C GeneID:851775
KEGG:sce:YDR194C CYGD:YDR194c HOGENOM:HOG000113654 OMA:PEAHENI
EvolutionaryTrace:P15424 NextBio:969573 Genevestigator:P15424
GermOnline:YDR194C GO:GO:0034337 Uniprot:P15424
Length = 664
Score = 174 (66.3 bits), Expect = 4.8e-10, P = 4.8e-10
Identities = 63/214 (29%), Positives = 104/214 (48%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLF--ERDLCINSPTGSGKTLSYALPIVQ 92
LD + A+ M L PVQ Q+TI P L + D+ + TG+GKT ++ +PI Q
Sbjct: 113 LDKEIHKAITRMEFPGLTPVQ----QKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQ 168
Query: 93 TLSNR---AVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELI 149
L N + ++A++V PTRDLALQ++ A + ++ GL + ++ L+
Sbjct: 169 HLINTKFDSQYMVKAVIVAPTRDLALQIE---AEVKKIHDMNYGLKK-YACVS-----LV 219
Query: 150 KRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRL 209
A + + + +L+ +I++ATPGRL+D + + Y V+DE DRL
Sbjct: 220 GGTDFRAAM-----NKMNKLRP--NIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEADRL 272
Query: 210 LREAYQAWLPTVLQLTRSDNENRFSDASTFLPSA 243
L ++ L T+ + N + T L SA
Sbjct: 273 LEIGFRDDLETISGILNEKNSKSADNIKTLLFSA 306
>CGD|CAL0006152 [details] [associations]
symbol:DHH1 species:5476 "Candida albicans" [GO:0010494
"cytoplasmic stress granule" evidence=IDA] [GO:0000932 "cytoplasmic
mRNA processing body" evidence=IEA] [GO:0030996 "cell cycle arrest
in response to nitrogen starvation" evidence=IEA] [GO:0034063
"stress granule assembly" evidence=IEA] [GO:0000753 "cell
morphogenesis involved in conjugation with cellular fusion"
evidence=IEA] [GO:0033962 "cytoplasmic mRNA processing body
assembly" evidence=IEA] [GO:0000290 "deadenylation-dependent
decapping of nuclear-transcribed mRNA" evidence=IEA] [GO:0031142
"induction of conjugation upon nitrogen starvation" evidence=IEA]
[GO:0003724 "RNA helicase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 CGD:CAL0006152 GO:GO:0005524 GO:GO:0006417
GO:GO:0006397 GO:GO:0003723 GO:GO:0000932 GO:GO:0051028
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0010494
GO:GO:0008026 EMBL:AACQ01000038 EMBL:AACQ01000037 eggNOG:COG0513
KO:K12614 InterPro:IPR014014 PROSITE:PS51195 RefSeq:XP_718704.1
RefSeq:XP_718788.1 ProteinModelPortal:Q5AAW3 SMR:Q5AAW3
GeneID:3639490 GeneID:3639628 KEGG:cal:CaO19.13577
KEGG:cal:CaO19.6197 Uniprot:Q5AAW3
Length = 549
Score = 135 (52.6 bits), Expect = 5.0e-10, Sum P(2) = 5.0e-10
Identities = 33/104 (31%), Positives = 56/104 (53%)
Query: 46 MGISSL-FPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRA 104
MGI F + +E+I L RD+ + G+GKT S+ +P +Q + + + ++A
Sbjct: 43 MGIFEAGFEKPSPIQEESIPMALAGRDILARAKNGTGKTASFIIPCLQLVKPKLNK-VQA 101
Query: 105 LVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISEL 148
L+++PTR+LALQ V + VG + G +S+ D+I L
Sbjct: 102 LILVPTRELALQTSQVVRTLGKHVGTQCMVTTGGTSLRDDIVRL 145
Score = 83 (34.3 bits), Expect = 5.0e-10, Sum P(2) = 5.0e-10
Identities = 25/84 (29%), Positives = 43/84 (51%)
Query: 163 EDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVL 222
+D+++ L V ILV TPGR++D + A + L V+DE D++L ++ + +L
Sbjct: 140 DDIVR-LHDPVHILVGTPGRVLD-LAARKVVDLSECPLFVMDEADKMLSREFKGIIEQIL 197
Query: 223 QLTRSDNENRFSDASTFLPSAFGS 246
+ N ++TF P A S
Sbjct: 198 EFF-PPNRQALLFSATF-PLAVKS 219
>UNIPROTKB|Q5AAW3 [details] [associations]
symbol:DHH1 "ATP-dependent RNA helicase DHH1"
species:237561 "Candida albicans SC5314" [GO:0010494 "cytoplasmic
stress granule" evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 CGD:CAL0006152 GO:GO:0005524
GO:GO:0006417 GO:GO:0006397 GO:GO:0003723 GO:GO:0000932
GO:GO:0051028 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0010494 GO:GO:0008026 EMBL:AACQ01000038 EMBL:AACQ01000037
eggNOG:COG0513 KO:K12614 InterPro:IPR014014 PROSITE:PS51195
RefSeq:XP_718704.1 RefSeq:XP_718788.1 ProteinModelPortal:Q5AAW3
SMR:Q5AAW3 GeneID:3639490 GeneID:3639628 KEGG:cal:CaO19.13577
KEGG:cal:CaO19.6197 Uniprot:Q5AAW3
Length = 549
Score = 135 (52.6 bits), Expect = 5.0e-10, Sum P(2) = 5.0e-10
Identities = 33/104 (31%), Positives = 56/104 (53%)
Query: 46 MGISSL-FPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRA 104
MGI F + +E+I L RD+ + G+GKT S+ +P +Q + + + ++A
Sbjct: 43 MGIFEAGFEKPSPIQEESIPMALAGRDILARAKNGTGKTASFIIPCLQLVKPKLNK-VQA 101
Query: 105 LVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISEL 148
L+++PTR+LALQ V + VG + G +S+ D+I L
Sbjct: 102 LILVPTRELALQTSQVVRTLGKHVGTQCMVTTGGTSLRDDIVRL 145
Score = 83 (34.3 bits), Expect = 5.0e-10, Sum P(2) = 5.0e-10
Identities = 25/84 (29%), Positives = 43/84 (51%)
Query: 163 EDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVL 222
+D+++ L V ILV TPGR++D + A + L V+DE D++L ++ + +L
Sbjct: 140 DDIVR-LHDPVHILVGTPGRVLD-LAARKVVDLSECPLFVMDEADKMLSREFKGIIEQIL 197
Query: 223 QLTRSDNENRFSDASTFLPSAFGS 246
+ N ++TF P A S
Sbjct: 198 EFF-PPNRQALLFSATF-PLAVKS 219
>TIGR_CMR|SO_3783 [details] [associations]
symbol:SO_3783 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0006139
"nucleobase-containing compound metabolic process" evidence=ISS]
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:AE014299
GenomeReviews:AE014299_GR InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
HSSP:Q58083 HOGENOM:HOG000268807 KO:K11927 OMA:HLIKQHN
RefSeq:NP_719320.1 ProteinModelPortal:Q8EAV8 GeneID:1171430
KEGG:son:SO_3783 PATRIC:23527244 ProtClustDB:CLSK2393932
Uniprot:Q8EAV8
Length = 535
Score = 105 (42.0 bits), Expect = 5.1e-10, Sum P(3) = 5.1e-10
Identities = 31/85 (36%), Positives = 48/85 (56%)
Query: 157 GICYDPEDVLQELQSAVDILVATPGRLMDHI--NATRGFTLEHLCYLVVDETDRLLREAY 214
G+ +P+ + +L+ VD+LVATPGRL+D + NA + LE LV+DE DR+L +
Sbjct: 110 GVPINPQ--INKLRHGVDVLVATPGRLLDLVQQNAVKFNQLE---ILVLDEADRMLDMGF 164
Query: 215 QAWLPTVLQLTRSDNENRFSDASTF 239
+ +L L + +N A TF
Sbjct: 165 IRDIKKILALLPAKRQNLMFSA-TF 188
Score = 103 (41.3 bits), Expect = 5.1e-10, Sum P(3) = 5.1e-10
Identities = 34/117 (29%), Positives = 58/117 (49%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
L L+ A+ G + P+Q + I L +D+ + TG+GKT + LP+++ L
Sbjct: 8 LSAPLQKAVSEQGYDTPSPIQA----QAIPAVLTGKDVMAAAQTGTGKTAGFTLPLLELL 63
Query: 95 S--NRAVRC-LRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISEL 148
+ ++A RALV+ PTR+LA QV + + L + G I +I++L
Sbjct: 64 AKGHKAKSGQTRALVLTPTRELAAQVGESVETYGKYLPLRSAVVFGGVPINPQINKL 120
Score = 51 (23.0 bits), Expect = 5.1e-10, Sum P(3) = 5.1e-10
Identities = 16/83 (19%), Positives = 40/83 (48%)
Query: 270 MVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQS 329
++ SAT + + +LA+ ++HP+ ++ R ++ + + K L+ L++
Sbjct: 182 LMFSATFSDEIRELAKGLVNHPVEISV-TPRNAAATTVKQWICPVDKTQKSALLIQLIKQ 240
Query: 330 LGEEKCIVFTSSVESTHRLCTLL 352
++ +VF+ + +RL L
Sbjct: 241 ENWQQVLVFSRTKHGANRLAKSL 263
>UNIPROTKB|Q48PB7 [details] [associations]
symbol:PSPPH_0449 "ATP-dependent RNA helicase RhlE,
putative" species:264730 "Pseudomonas syringae pv. phaseolicola
1448A" [GO:0006139 "nucleobase-containing compound metabolic
process" evidence=ISS] [GO:0008026 "ATP-dependent helicase
activity" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
EMBL:CP000058 GenomeReviews:CP000058_GR InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807 KO:K11927
RefSeq:YP_272752.1 ProteinModelPortal:Q48PB7 GeneID:3558820
KEGG:psp:PSPPH_0449 PATRIC:19969930 OMA:DGDLMGF
ProtClustDB:CLSK865855 Uniprot:Q48PB7
Length = 625
Score = 151 (58.2 bits), Expect = 5.2e-10, Sum P(2) = 5.2e-10
Identities = 66/214 (30%), Positives = 94/214 (43%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
L L A++ G + PVQ Q I L RDL + + TG+GKT +ALPI++ L
Sbjct: 8 LSEALVRAIEAAGYTQPTPVQ----QRAIPAVLQGRDLMVAAQTGTGKTGGFALPILERL 63
Query: 95 SNRAV---------RCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEI 145
V R R LV+ PTR+LA QV + F A + G
Sbjct: 64 FPNGVPDKSQRHGPRQPRVLVLTPTRELAAQVHESFKLYARDLKFVSACIFG-------- 115
Query: 146 SELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDE 205
G+ +P+ +Q + VD+LVA PGRL+D + L H+ LV+DE
Sbjct: 116 -----------GVGMNPQ--VQAMSRGVDVLVACPGRLLD-LAGQGSVDLSHVEILVLDE 161
Query: 206 TDRLLREAYQAWLPTVLQLTRSDNENRFSDASTF 239
DR+L + + VL + +N A TF
Sbjct: 162 ADRMLDMGFVHDVKKVLARLPAKRQNLLFSA-TF 194
Score = 67 (28.6 bits), Expect = 5.2e-10, Sum P(2) = 5.2e-10
Identities = 29/98 (29%), Positives = 47/98 (47%)
Query: 270 MVLSATLTQDPNKLAQLDLHHP--LFLTTGETRYKLPERLES--YKLICESKLKPLYLVA 325
++ SAT + D LA LH+P + +T T ER+E ++L K L+A
Sbjct: 188 LLFSATFSNDITSLAGKLLHNPERIEVTPPNTTV---ERIEQRVFRLAANHKRS---LLA 241
Query: 326 LLQSLGE-EKCIVFTSSVESTHRLCTLLNHFGELRIKI 362
L ++G E+ +VFT + +RL L+ G + I
Sbjct: 242 HLITVGAWEQVLVFTRTKHGANRLAEYLDKHGLAAVAI 279
>ASPGD|ASPL0000054300 [details] [associations]
symbol:AN0583 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005730
"nucleolus" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012541
Pfam:PF00270 Pfam:PF00271 Pfam:PF08147 ProDom:PD024971
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005730 EMBL:BN001308 EMBL:AACD01000007 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K14808 RefSeq:XP_658187.1 ProteinModelPortal:Q5BFU7
STRING:Q5BFU7 EnsemblFungi:CADANIAT00002094 GeneID:2876361
KEGG:ani:AN0583.2 HOGENOM:HOG000246455 OMA:HLKVEMN
OrthoDB:EOG4JWZP1 Uniprot:Q5BFU7
Length = 936
Score = 124 (48.7 bits), Expect = 5.8e-10, Sum P(2) = 5.8e-10
Identities = 33/121 (27%), Positives = 62/121 (51%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
L+ L A+ G S P+Q ++TI + ++D+ + TGSGKT ++ +P+++ L
Sbjct: 98 LNANLLKAIARKGFSVPTPIQ----RKTIPVIMEDQDVVGMARTGSGKTAAFVIPMIEKL 153
Query: 95 SNRAVRC-LRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPK 153
+ + + R L++ P+R+LALQ V + L L VG S+ ++ + P
Sbjct: 154 KSHSTKFGARGLILSPSRELALQTLKVVKELGKGTDLKSVLLVGGDSLEEQFGMMAGNPD 213
Query: 154 L 154
+
Sbjct: 214 I 214
Score = 100 (40.3 bits), Expect = 5.8e-10, Sum P(2) = 5.8e-10
Identities = 50/192 (26%), Positives = 76/192 (39%)
Query: 174 DILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRF 233
DI++ATPGR + H+ L + Y+V DE DRL + A L +L S +
Sbjct: 213 DIVIATPGRFL-HLKVEMNLDLSSIKYVVFDEADRLFEMGFAAQLTEILHGLPSTRQTLL 271
Query: 234 SDASTFLPSAFGSLKTIRRCG------VERGFKDKPYPRLVKMVLSATLTQDPNKLAQLD 287
A+ LP SL R G V + K P L S + L +
Sbjct: 272 FSAT--LPK---SLVEFARAGLQDPTLVRLDTESKISPDLQNAFFSVKSAEKEGALLYI- 325
Query: 288 LHHPLFLTTGETR--YKLPER-LESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVES 344
L+ + + TG T +L E+ E K + + V + +S + IVF ++
Sbjct: 326 LNEVIKMPTGPTEASLRLKEKGPEDSKNKKRKRAEMERAVNMKESPTKHSTIVFAATKHH 385
Query: 345 THRLCTLLNHFG 356
L +LL G
Sbjct: 386 VDYLYSLLREAG 397
>UNIPROTKB|F1S0U0 [details] [associations]
symbol:DDX31 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
GeneTree:ENSGT00550000075041 OMA:ARIGCHG EMBL:CU326339
Ensembl:ENSSSCT00000006300 Uniprot:F1S0U0
Length = 784
Score = 174 (66.3 bits), Expect = 6.1e-10, P = 6.1e-10
Identities = 97/325 (29%), Positives = 155/325 (47%)
Query: 57 AVWQETIGPGLFE-RDLCINSPTGS-GKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLA 114
++ +++I P L E RD + S TGS GKTL+Y +P+VQ+L +AV+ P
Sbjct: 212 SIQKQSI-PVLLEGRDALVRSQTGSEGKTLAYCIPMVQSL--QAVK--------PK---- 256
Query: 115 LQVKD-VFAAI-APAVGLSVGLAVGQSSIADEISELIKR-PKLEAGICYDPEDVLQE--- 168
+Q D +A I P L++ QS D + +L+K + G+ E E
Sbjct: 257 IQRGDGPYALILVPTRELAL-----QSF--DTVQKLLKPFTWIVPGVLMGGEKRKSEKAR 309
Query: 169 LQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSD 228
L+ ++IL++TPGRL+DHI +T+ + +L++DE DRLL ++ + +L ++
Sbjct: 310 LRKGINILISTPGRLVDHIKSTKNMRFCRIRWLILDEADRLLDLGFEKDIALILNAVNAE 369
Query: 229 NENRFSDA-STFLPSAFGSLKTIR-----RCGVERGFKDKPYPRLVKMVLSATLTQDPNK 282
R + S L L I R V G +D+ +P+ + +L A+ P
Sbjct: 370 RPERQNVLLSATLTEGVTRLADISLHEPVRISVLEGSQDQMHPKS-RAILGAS---PPAA 425
Query: 283 LAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVA-LLQSLG---EEKCIVF 338
++LD G + +P LE + + SKL+ + L A +LQ ++K IVF
Sbjct: 426 SSELD---------G---FAIPVGLEQHVALVPSKLRLVSLAAFILQKCKFEPDQKMIVF 473
Query: 339 TSS---VESTHRLC--TLLNHFGEL 358
SS VE H L TLL G L
Sbjct: 474 FSSCELVEFHHSLFLQTLLGGSGAL 498
>UNIPROTKB|Q9NR30 [details] [associations]
symbol:DDX21 "Nucleolar RNA helicase 2" species:9606 "Homo
sapiens" [GO:0005524 "ATP binding" evidence=IEA] [GO:0003725
"double-stranded RNA binding" evidence=IEA] [GO:0009615 "response
to virus" evidence=IEA] [GO:0043330 "response to exogenous dsRNA"
evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=TAS] [GO:0005634 "nucleus" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012562 Pfam:PF00270 Pfam:PF00271 Pfam:PF08152
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005730 EMBL:CH471083 GO:GO:0009615 GO:GO:0003725
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
GO:GO:0043330 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
EMBL:U41387 EMBL:AF261903 EMBL:AF261917 EMBL:AF261904 EMBL:AF261905
EMBL:AF261906 EMBL:AF261907 EMBL:AF261908 EMBL:AF261909
EMBL:AF261910 EMBL:AF261911 EMBL:AF261912 EMBL:AF261913
EMBL:AF261914 EMBL:AF261915 EMBL:AF261916 EMBL:AK315585
EMBL:CR749598 EMBL:AL359844 EMBL:BC008071 IPI:IPI00015953
IPI:IPI00477179 PIR:PC6010 RefSeq:NP_001243839.1 RefSeq:NP_004719.2
UniGene:Hs.223141 ProteinModelPortal:Q9NR30 SMR:Q9NR30
IntAct:Q9NR30 MINT:MINT-231639 STRING:Q9NR30 PhosphoSite:Q9NR30
DMDM:76803555 SWISS-2DPAGE:Q9NR30 PaxDb:Q9NR30 PeptideAtlas:Q9NR30
PRIDE:Q9NR30 DNASU:9188 Ensembl:ENST00000354185 GeneID:9188
KEGG:hsa:9188 UCSC:uc001jov.1 CTD:9188 GeneCards:GC10P070715
H-InvDB:HIX0008880 HGNC:HGNC:2744 HPA:HPA036592 MIM:606357
neXtProt:NX_Q9NR30 PharmGKB:PA27210 HOGENOM:HOG000268805
HOVERGEN:HBG051331 InParanoid:Q9NR30 OMA:EILCVAY OrthoDB:EOG46143T
PhylomeDB:Q9NR30 ChiTaRS:DDX21 GenomeRNAi:9188 NextBio:34453
ArrayExpress:Q9NR30 Bgee:Q9NR30 CleanEx:HS_DDX21
Genevestigator:Q9NR30 GermOnline:ENSG00000165732 Uniprot:Q9NR30
Length = 783
Score = 122 (48.0 bits), Expect = 6.3e-10, Sum P(2) = 6.3e-10
Identities = 32/106 (30%), Positives = 57/106 (53%)
Query: 31 HLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPI 90
+ P + +K+ L+ G++ LFP+Q + G +DL + TG+GKT S+A+P+
Sbjct: 190 NFPISEETIKL-LKGRGVTFLFPIQAKTFHHVYS-G---KDLIAQARTGTGKTFSFAIPL 244
Query: 91 VQTL-----SNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLS 131
++ L + R + LV+ PTR+LA QV F+ I + ++
Sbjct: 245 IEKLHGELQDRKRGRAPQVLVLAPTRELANQVSKDFSDITKKLSVA 290
Score = 100 (40.3 bits), Expect = 6.3e-10, Sum P(2) = 6.3e-10
Identities = 25/97 (25%), Positives = 53/97 (54%)
Query: 139 SSIADEISELIKRPKLEA---GICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTL 195
+ ++ + S++ K+ + G Y + + +++ +DILV TPGR+ DHI + L
Sbjct: 274 NQVSKDFSDITKKLSVACFYGGTPYGGQ--FERMRNGIDILVGTPGRIKDHIQNGK-LDL 330
Query: 196 EHLCYLVVDETDRLLREAYQAWLPTVLQLT-RSDNEN 231
L ++V+DE D++L + + +L + + D+E+
Sbjct: 331 TKLKHVVLDEVDQMLDMGFADQVEEILSVAYKKDSED 367
>UNIPROTKB|A5D7C1 [details] [associations]
symbol:DDX52 "Probable ATP-dependent RNA helicase DDX52"
species:9913 "Bos taurus" [GO:0005730 "nucleolus" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005730 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 EMBL:BC140501 IPI:IPI00692860
RefSeq:NP_001096708.1 UniGene:Bt.51117 ProteinModelPortal:A5D7C1
SMR:A5D7C1 PRIDE:A5D7C1 Ensembl:ENSBTAT00000013622 GeneID:510826
KEGG:bta:510826 CTD:11056 GeneTree:ENSGT00550000074863
HOGENOM:HOG000242486 HOVERGEN:HBG051332 InParanoid:A5D7C1 KO:K14779
OMA:NVMKQSG OrthoDB:EOG4XKV6Q NextBio:20869637 ArrayExpress:A5D7C1
Uniprot:A5D7C1
Length = 596
Score = 137 (53.3 bits), Expect = 6.4e-10, Sum P(3) = 6.4e-10
Identities = 34/118 (28%), Positives = 63/118 (53%)
Query: 28 PLDHLPCLDPRLKV---ALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTL 84
P+ LD K+ LQN+ + + F + + I L R+L ++PTGSGKTL
Sbjct: 157 PIATFQQLDQEYKINSRLLQNI-LDAGFQTPTPIQMQAIPVMLHGRELLASAPTGSGKTL 215
Query: 85 SYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIA 142
++++PI+ L + RAL++ PTR+LA Q+ ++ G + + + ++++A
Sbjct: 216 AFSIPILMHLKQPTNKGFRALIISPTRELASQIHRELVKLSEGTGFRIHM-IHKAAVA 272
Score = 69 (29.3 bits), Expect = 6.4e-10, Sum P(3) = 6.4e-10
Identities = 22/70 (31%), Positives = 35/70 (50%)
Query: 174 DILVATPGRLMDHINATR-GFTLEHLCYLVVDETDRLLREA---YQAWLPTVLQLTRSDN 229
DILV TP RL+ + G L + +LVVDE+D+L + ++ L ++ S
Sbjct: 285 DILVTTPNRLIYLLKQDPPGIDLTSVEWLVVDESDKLFEDGKTGFRDQLASIFLACTSHK 344
Query: 230 ENRFSDASTF 239
R ++TF
Sbjct: 345 VKRAMFSATF 354
Score = 50 (22.7 bits), Expect = 6.4e-10, Sum P(3) = 6.4e-10
Identities = 20/84 (23%), Positives = 35/84 (41%)
Query: 266 RLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVA 325
++ + + SAT D + +L+L + ++ G R E +E L S+ L +
Sbjct: 344 KVKRAMFSATFAYDVEQWCRLNLDSVITVSVG-ARNSAVETVEQELLFVGSETGKLLAMR 402
Query: 326 LLQSLG-EEKCIVFTSSVESTHRL 348
L G +VF S+E L
Sbjct: 403 ELVKKGFNPPVLVFVQSIERAKEL 426
>RGD|1308990 [details] [associations]
symbol:Ddx10 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 10"
species:10116 "Rattus norvegicus" [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 RGD:1308990
GO:GO:0005524 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 EMBL:CH473975 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 KO:K14776 InterPro:IPR025313 Pfam:PF13959
GeneTree:ENSGT00550000074980 CTD:1662 OrthoDB:EOG4BK536 OMA:ADKVIEP
IPI:IPI00869603 RefSeq:NP_001100290.1 UniGene:Rn.99481
Ensembl:ENSRNOT00000017683 GeneID:300710 KEGG:rno:300710
UCSC:RGD:1308990 NextBio:647348 Uniprot:D3ZBY5
Length = 874
Score = 121 (47.7 bits), Expect = 6.6e-10, Sum P(2) = 6.6e-10
Identities = 34/119 (28%), Positives = 60/119 (50%)
Query: 58 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSN---RAVRCLRALVVLPTRDLA 114
+ ++TIG L +D+ + TGSGKTL++ +P+++ L + L L++ PTR+LA
Sbjct: 95 IQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLEALYRLQWTSTDGLGVLIISPTRELA 154
Query: 115 LQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAV 173
Q +V + S GL +G + E +E I + +C P +LQ + +
Sbjct: 155 YQTFEVLRKVGKNHDFSAGLIIGGKDLKHE-AERINN--INILVC-TPGRLLQHMDETI 209
Score = 104 (41.7 bits), Expect = 4.9e-08, Sum P(2) = 4.9e-08
Identities = 28/92 (30%), Positives = 47/92 (51%)
Query: 150 KRPKLEAGICYDPEDVLQELQ--SAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETD 207
K AG+ +D+ E + + ++ILV TPGRL+ H++ T F +L LV+DE D
Sbjct: 166 KNHDFSAGLIIGGKDLKHEAERINNINILVCTPGRLLQHMDETICFHATNLQMLVLDEAD 225
Query: 208 RLLREAYQAWLPTVLQ-LTRSDNENRFSDAST 238
R+L + + +++ L + FS T
Sbjct: 226 RILDMGFADTMNAIIENLPKKRQTLLFSATQT 257
Score = 102 (41.0 bits), Expect = 6.6e-10, Sum P(2) = 6.6e-10
Identities = 38/109 (34%), Positives = 53/109 (48%)
Query: 270 MVLSATLTQDPNKLAQLDLHHPLFLTTGE-TRYKLPERLESYKLICESKLKPLYLVALLQ 328
++ SAT T+ LA+L L P ++ E +Y P LE +ICE K L + L+
Sbjct: 250 LLFSATQTKSVKDLARLSLKDPEYVWVHEKAKYSTPATLEQNYIICELHQKISVLFSFLR 309
Query: 329 SLGEEKCIVFTSSVESTHRLCTLLNHFGELR--IKIKEYSGLQRQSVRR 375
S +K IVF SS + L + F LR I I G Q+Q +RR
Sbjct: 310 SHLTKKSIVFFSSCKEVQYLYRV---FCRLRPGISILALHGRQQQ-MRR 354
>UNIPROTKB|P25888 [details] [associations]
symbol:rhlE "ATP-dependent RNA helicase" species:83333
"Escherichia coli K-12" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0042255 "ribosome assembly" evidence=IGI]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=IDA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:U00096 EMBL:AP009048
GenomeReviews:AP009048_GR GenomeReviews:U00096_GR GO:GO:0003723
GO:GO:0005840 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0042255 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 EMBL:L02123 HOGENOM:HOG000268807 EMBL:X56307
PIR:E64816 RefSeq:NP_415318.1 RefSeq:YP_489070.1
ProteinModelPortal:P25888 SMR:P25888 DIP:DIP-10697N IntAct:P25888
MINT:MINT-1313387 PRIDE:P25888 EnsemblBacteria:EBESCT00000003075
EnsemblBacteria:EBESCT00000017437 GeneID:12930968 GeneID:945425
KEGG:ecj:Y75_p0770 KEGG:eco:b0797 PATRIC:32116795 EchoBASE:EB1217
EcoGene:EG11235 KO:K11927 OMA:HLIKQHN ProtClustDB:PRK10590
BioCyc:EcoCyc:EG11235-MONOMER BioCyc:ECOL316407:JW0781-MONOMER
Genevestigator:P25888 Uniprot:P25888
Length = 454
Score = 148 (57.2 bits), Expect = 6.6e-10, Sum P(2) = 6.6e-10
Identities = 55/165 (33%), Positives = 82/165 (49%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFE-RDLCINSPTGSGKTLSYALPIVQT 93
L P + A+ G P+Q Q+ I P + E RDL ++ TG+GKT + LP++Q
Sbjct: 8 LSPDILRAVAEQGYREPTPIQ----QQAI-PAVLEGRDLMASAQTGTGKTAGFTLPLLQH 62
Query: 94 LSNRAV-----RCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISEL 148
L R R +RAL++ PTR+LA Q+ G V S I L
Sbjct: 63 LITRQPHAKGRRPVRALILTPTRELAAQI---------------GENVRDYSKYLNIRSL 107
Query: 149 IKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMD--HINATR 191
+ + G+ +P+ + +L+ VD+LVATPGRL+D H NA +
Sbjct: 108 V----VFGGVSINPQ--MMKLRGGVDVLVATPGRLLDLEHQNAVK 146
Score = 107 (42.7 bits), Expect = 2.7e-05, Sum P(2) = 2.7e-05
Identities = 31/85 (36%), Positives = 48/85 (56%)
Query: 157 GICYDPEDVLQELQSAVDILVATPGRLMD--HINATRGFTLEHLCYLVVDETDRLLREAY 214
G+ +P+ + +L+ VD+LVATPGRL+D H NA + L+ + LV+DE DR+L +
Sbjct: 112 GVSINPQ--MMKLRGGVDVLVATPGRLLDLEHQNAVK---LDQVEILVLDEADRMLDMGF 166
Query: 215 QAWLPTVLQLTRSDNENRFSDASTF 239
+ VL + +N A TF
Sbjct: 167 IHDIRRVLTKLPAKRQNLLFSA-TF 190
Score = 65 (27.9 bits), Expect = 6.6e-10, Sum P(2) = 6.6e-10
Identities = 21/87 (24%), Positives = 39/87 (44%)
Query: 270 MVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQS 329
++ SAT + D LA+ LH+PL + R +++ + + K K L ++
Sbjct: 184 LLFSATFSDDIKALAEKLLHNPLEIEVAR-RNTASDQVTQHVHFVDKKRKRELLSHMIGK 242
Query: 330 LGEEKCIVFTSSVESTHRLCTLLNHFG 356
++ +VFT + + L LN G
Sbjct: 243 GNWQQVLVFTRTKHGANHLAEQLNKDG 269
>TIGR_CMR|BA_2109 [details] [associations]
symbol:BA_2109 "ATP-dependent RNA helicase, DEAD/DEAH box
family" species:198094 "Bacillus anthracis str. Ames" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008152
"metabolic process" evidence=ISS] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:AE016879 EMBL:AE017334
EMBL:AE017225 GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 OMA:MMAINTI HSSP:P10081 HOGENOM:HOG000268811
RefSeq:NP_844507.1 RefSeq:YP_018751.1 RefSeq:YP_028224.1
ProteinModelPortal:Q81RE0 DNASU:1085806
EnsemblBacteria:EBBACT00000011412 EnsemblBacteria:EBBACT00000014072
EnsemblBacteria:EBBACT00000023039 GeneID:1085806 GeneID:2818618
GeneID:2851363 KEGG:ban:BA_2109 KEGG:bar:GBAA_2109 KEGG:bat:BAS1961
ProtClustDB:CLSK886848 BioCyc:BANT260799:GJAJ-2029-MONOMER
BioCyc:BANT261594:GJ7F-2106-MONOMER Uniprot:Q81RE0
Length = 389
Score = 144 (55.7 bits), Expect = 6.6e-10, Sum P(2) = 6.6e-10
Identities = 36/124 (29%), Positives = 66/124 (53%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFE-RDLCINSPTGSGKTLSYALPIVQT 93
+ P L+ A + G L +Q ++ I P + E +D+ SPTG+GKTL+Y LP++
Sbjct: 5 MQPFLQQAWEKAGFKELTEIQ----KQAI-PTILEGQDVIAESPTGTGKTLAYLLPLLHK 59
Query: 94 LSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPK 153
+ N V+ + +V+ PTR+L +Q+ + +S +G + I ++ +L K P+
Sbjct: 60 I-NPEVKQPQVVVLAPTRELVMQIHEEVQKFTAGTEISGASLIGGADIKRQVEKLKKHPR 118
Query: 154 LEAG 157
+ G
Sbjct: 119 VIVG 122
Score = 67 (28.6 bits), Expect = 6.6e-10, Sum P(2) = 6.6e-10
Identities = 15/72 (20%), Positives = 39/72 (54%)
Query: 166 LQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLT 225
+++L+ ++V +PGR+++ I + + + +V DE D+++++ + V++ T
Sbjct: 110 VEKLKKHPRVIVGSPGRILELIRMKK-LKMHEVKTIVFDEFDQIVKQKMMGAVQDVIKST 168
Query: 226 RSDNENRFSDAS 237
D + F A+
Sbjct: 169 MRDRQLVFFSAT 180
>UNIPROTKB|J3KT12 [details] [associations]
symbol:EIF4A1 "Eukaryotic initiation factor 4A-I"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
EMBL:AC016876 HGNC:HGNC:3282 ChiTaRS:EIF4A1
ProteinModelPortal:J3KT12 Ensembl:ENST00000582746 Uniprot:J3KT12
Length = 341
Score = 128 (50.1 bits), Expect = 8.0e-10, Sum P(2) = 8.0e-10
Identities = 30/102 (29%), Positives = 59/102 (57%)
Query: 57 AVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQ 116
A+ Q I P + D+ + +G+GKT ++A+ I+Q + ++ +ALV+ PTR+LA Q
Sbjct: 57 AIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIE-LDLKATQALVLAPTRELAQQ 115
Query: 117 VKDVFAAIAPAVGLSVGLAVGQSSIADEISEL-IKRPKLEAG 157
++ V A+ +G S +G +++ E+ +L ++ P + G
Sbjct: 116 IQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVG 157
Score = 82 (33.9 bits), Expect = 8.0e-10, Sum P(2) = 8.0e-10
Identities = 20/66 (30%), Positives = 37/66 (56%)
Query: 166 LQELQ-SAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQL 224
+Q+LQ A I+V TPGR+ D +N R + +++ V+DE D +L ++ + + Q
Sbjct: 144 VQKLQMEAPHIIVGTPGRVFDMLNR-RYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQK 202
Query: 225 TRSDNE 230
S+ +
Sbjct: 203 LNSNTQ 208
Score = 46 (21.3 bits), Expect = 4.0e-06, Sum P(2) = 4.0e-06
Identities = 20/94 (21%), Positives = 42/94 (44%)
Query: 255 VERGFKDKPYPRLVKM-------VLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERL 307
+ RGFKD+ Y K+ +LSAT+ D ++ + + P+ + + L
Sbjct: 188 LSRGFKDQIYDIFQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIR 247
Query: 308 ESYKLICESKLKPLYLVALLQSLGEEKCIVFTSS 341
+ Y + + K L L ++L + ++F ++
Sbjct: 248 QFYINVEREEWKLDTLCDLYETLTITQAVIFINT 281
>MGI|MGI:1915247 [details] [associations]
symbol:Ddx59 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 59"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 MGI:MGI:1915247
GO:GO:0005524 GO:GO:0046872 GO:GO:0003723 GO:GO:0005622
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR007529
Pfam:PF04438 PROSITE:PS51083 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HSSP:P09052
GeneTree:ENSGT00610000086076 CTD:83479 HOGENOM:HOG000006599
HOVERGEN:HBG106120 OMA:VTRPIID EMBL:AK004833 EMBL:AK013179
EMBL:AK076462 EMBL:BC023840 IPI:IPI00119928 IPI:IPI00226119
RefSeq:NP_080776.1 UniGene:Mm.385462 UniGene:Mm.486546
ProteinModelPortal:Q9DBN9 SMR:Q9DBN9 PhosphoSite:Q9DBN9
PRIDE:Q9DBN9 Ensembl:ENSMUST00000027655 GeneID:67997 KEGG:mmu:67997
UCSC:uc007cut.1 UCSC:uc007cuu.2 InParanoid:Q9DBN9 OrthoDB:EOG4K9BBZ
ChiTaRS:DDX59 NextBio:326168 Bgee:Q9DBN9 CleanEx:MM_DDX59
Genevestigator:Q9DBN9 Uniprot:Q9DBN9
Length = 619
Score = 109 (43.4 bits), Expect = 8.1e-10, Sum P(3) = 8.1e-10
Identities = 27/76 (35%), Positives = 45/76 (59%)
Query: 44 QNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALP-IVQTLSNRAVRCL 102
QN+ S + V + + I GL RD+ ++ TGSGKT ++ LP I++ S +
Sbjct: 216 QNLKKSG-YEVPTPIQMQMIPVGLLGRDILASADTGSGKTAAFLLPVIIRAFSED--KTP 272
Query: 103 RALVVLPTRDLALQVK 118
AL++ PTR+LA+Q++
Sbjct: 273 SALILTPTRELAIQIE 288
Score = 103 (41.3 bits), Expect = 8.1e-10, Sum P(3) = 8.1e-10
Identities = 32/98 (32%), Positives = 51/98 (52%)
Query: 134 LAVGQSSIADEISELIKRPK---LEAGICYDPEDVLQELQSAVDILVATPGRLMDHINAT 190
LA+ A E+ + R K L G+ P+ L L+ V +++ATPGRL+D I +
Sbjct: 283 LAIQIERQAKELMSGLPRMKTVLLVGGLPLPPQ--LYRLRQHVKVIIATPGRLLDIIKQS 340
Query: 191 RGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSD 228
+L + +VVDE D +L+ +Q + VL+ T D
Sbjct: 341 -SVSLSGIKIVVVDEADTMLKMGFQQQVLDVLEHTPGD 377
Score = 47 (21.6 bits), Expect = 8.1e-10, Sum P(3) = 8.1e-10
Identities = 20/72 (27%), Positives = 35/72 (48%)
Query: 270 MVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLP-ERLESYKLICE--SKLKPLYLVAL 326
+++SAT+ +L LH+P+ + TG+ LP + L E +K K L+ +
Sbjct: 381 ILVSATIPDSIEQLTDQLLHNPVRIITGDKN--LPCASVRQIILWVEDPAKKKKLFEILN 438
Query: 327 LQSLGEEKCIVF 338
Q L + +VF
Sbjct: 439 DQKLFKPPVLVF 450
>ZFIN|ZDB-GENE-061013-64 [details] [associations]
symbol:ddx28 "DEAD (Asp-Glu-Ala-Asp) box polypeptide
28" species:7955 "Danio rerio" [GO:0004386 "helicase activity"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
ZFIN:ZDB-GENE-061013-64 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 CTD:55794
HOGENOM:HOG000008689 HOVERGEN:HBG081424 OrthoDB:EOG42RD7H
EMBL:BC124668 IPI:IPI00805270 RefSeq:NP_001070800.1
UniGene:Dr.84136 ProteinModelPortal:Q08BL1 GeneID:768189
KEGG:dre:768189 InParanoid:Q08BL1 NextBio:20918504
ArrayExpress:Q08BL1 Uniprot:Q08BL1
Length = 558
Score = 133 (51.9 bits), Expect = 8.7e-10, Sum P(2) = 8.7e-10
Identities = 39/107 (36%), Positives = 58/107 (54%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
L P L LQ I + P V + +TI L R++ + TGSGKTL+Y LPI+ L
Sbjct: 158 LCPELVETLQRQNI--IHPTTVQL--QTIPKILKGRNILCAAETGSGKTLTYLLPIIHRL 213
Query: 95 SNRAV----RCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVG 137
+ R +RA+V++P+R+LA QV V +++ GL V + G
Sbjct: 214 QEDLLAGSERSIRAVVIVPSRELAEQVNSVARSVSERFGLVVKVVGG 260
Score = 83 (34.3 bits), Expect = 8.7e-10, Sum P(2) = 8.7e-10
Identities = 19/53 (35%), Positives = 31/53 (58%)
Query: 174 DILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTR 226
DILV+TPG L+ + R +L L +LV+DE D + +++ L +L T+
Sbjct: 277 DILVSTPGALLKAL-WKRFISLSELYFLVIDEADTMFDDSFAGMLEKILSHTQ 328
>TAIR|locus:2167903 [details] [associations]
symbol:PRH75 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISM;IEA;IDA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA;ISS] [GO:0005730 "nucleolus" evidence=IDA]
[GO:0001510 "RNA methylation" evidence=RCA] [GO:0051604 "protein
maturation" evidence=RCA] [GO:0016070 "RNA metabolic process"
evidence=TAS] [GO:0017151 "DEAD/H-box RNA helicase binding"
evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012562 Pfam:PF00270 Pfam:PF00271
Pfam:PF08152 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0005730
GO:GO:0003723 GO:GO:0016070 GO:GO:0017151 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:AB019235 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268805 EMBL:X99938 EMBL:AY039576 EMBL:AY056137
EMBL:BT008581 IPI:IPI00520493 RefSeq:NP_201025.1 UniGene:At.22598
ProteinModelPortal:Q39189 SMR:Q39189 IntAct:Q39189 STRING:Q39189
PaxDb:Q39189 PRIDE:Q39189 EnsemblPlants:AT5G62190.1 GeneID:836340
KEGG:ath:AT5G62190 GeneFarm:918 TAIR:At5g62190 InParanoid:Q39189
OMA:QCEPPRE PhylomeDB:Q39189 ProtClustDB:CLSN2687322
Genevestigator:Q39189 GermOnline:AT5G62190 Uniprot:Q39189
Length = 671
Score = 177 (67.4 bits), Expect = 9.0e-10, Sum P(2) = 9.0e-10
Identities = 65/213 (30%), Positives = 98/213 (46%)
Query: 39 LKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRA 98
L+ L+ GI +LFP+Q + + + DL + TG GKTL++ LPI+++L N
Sbjct: 107 LREKLKANGIEALFPIQASTFDMVLDGA----DLVGRARTGQGKTLAFVLPILESLVNGP 162
Query: 99 VRCLR---------ALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELI 149
+ R LV+LPTR+LA QV F A ++GLS G S +
Sbjct: 163 AKSKRKMGYGRSPSVLVLLPTRELAKQVAADFDAYGGSLGLSSCCLYGGDSYP------V 216
Query: 150 KRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRL 209
+ KL+ G VDI+V TPGR+ DHI + +L + V+DE D +
Sbjct: 217 QEGKLKRG---------------VDIVVGTPGRIKDHIER-QNLDFSYLQFRVLDEADEM 260
Query: 210 LREAYQAWLPTVLQLTRSDNENRFSDASTFLPS 242
LR + + +L + + S LPS
Sbjct: 261 LRMGFVEDVELILGKVEDSTKVQTLLFSATLPS 293
Score = 37 (18.1 bits), Expect = 9.0e-10, Sum P(2) = 9.0e-10
Identities = 6/14 (42%), Positives = 10/14 (71%)
Query: 355 FGELRIKIKEYSGL 368
F E ++++ E SGL
Sbjct: 356 FAETKVQVSELSGL 369
>FB|FBgn0030855 [details] [associations]
symbol:CG5800 species:7227 "Drosophila melanogaster"
[GO:0003724 "RNA helicase activity" evidence=ISS] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0007526 "larval somatic muscle development"
evidence=IMP] [GO:0022008 "neurogenesis" evidence=IMP]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0022008 EMBL:AE014298
GO:GO:0006200 GO:GO:0003723 GO:GO:0007526 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0016779
KO:K14776 InterPro:IPR025313 Pfam:PF13959
GeneTree:ENSGT00550000074980 OMA:ADKVIEP HSSP:P10081 EMBL:AY119628
RefSeq:NP_573230.1 UniGene:Dm.13464 SMR:Q9VX34 STRING:Q9VX34
EnsemblMetazoa:FBtr0074453 GeneID:32742 KEGG:dme:Dmel_CG5800
UCSC:CG5800-RA FlyBase:FBgn0030855 InParanoid:Q9VX34
OrthoDB:EOG4MCVFH GenomeRNAi:32742 NextBio:780142 Uniprot:Q9VX34
Length = 826
Score = 125 (49.1 bits), Expect = 9.3e-10, Sum P(4) = 9.3e-10
Identities = 31/95 (32%), Positives = 55/95 (57%)
Query: 53 PVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL-SNRAVRC--LRALVVLP 109
P QV +++IGP L +D+ + TGSGKTL++ +P+++ L N+ R + A+++ P
Sbjct: 95 PTQVQ--RDSIGPALQGKDVLGAAITGSGKTLAFLIPVLEHLFMNKWSRTDGVGAIIISP 152
Query: 110 TRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADE 144
TR+LA Q+ + + S GL +G ++ E
Sbjct: 153 TRELAYQIFETLKKVGKHHDFSAGLIIGGKNLKFE 187
Score = 89 (36.4 bits), Expect = 9.3e-10, Sum P(4) = 9.3e-10
Identities = 18/50 (36%), Positives = 30/50 (60%)
Query: 174 DILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQ 223
+IL+ TPGRL+ H++ F + LV+DE DR L +Q L ++++
Sbjct: 195 NILICTPGRLLQHMDENPLFNTSTMEMLVLDEADRCLDMGFQKTLNSIIE 244
Score = 45 (20.9 bits), Expect = 9.3e-10, Sum P(4) = 9.3e-10
Identities = 10/28 (35%), Positives = 17/28 (60%)
Query: 270 MVLSATLTQDPNKLAQLDLHHPLFLTTG 297
++ SAT T LA+L+L P+++ G
Sbjct: 253 LLFSATQTNTVQDLARLNLKDPVYVGYG 280
Score = 39 (18.8 bits), Expect = 9.3e-10, Sum P(4) = 9.3e-10
Identities = 14/48 (29%), Positives = 28/48 (58%)
Query: 303 LPERLE-SYKLI-CESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRL 348
+PE L+ SY ++ E K+ L+ + +++ ++K IVF +S + L
Sbjct: 303 VPELLQQSYVVLNLEDKITMLW--SFIKNHLKQKIIVFVASCKQAKYL 348
>UNIPROTKB|B7Z5N6 [details] [associations]
symbol:DDX59 "cDNA FLJ56549, highly similar to Homo sapiens
DEAD (Asp-Glu-Ala-Asp) box polypeptide 59 (DDX59), transcript
variant 2, mRNA" species:9606 "Homo sapiens" [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR007529
Pfam:PF04438 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
EMBL:AL445483 UniGene:Hs.497332 HGNC:HGNC:25360
HOGENOM:HOG000006599 HOVERGEN:HBG106120 OrthoDB:EOG4K9BBZ
EMBL:AK299219 IPI:IPI00514037 SMR:B7Z5N6 Ensembl:ENST00000367348
UCSC:uc010ppl.1 Uniprot:B7Z5N6
Length = 567
Score = 108 (43.1 bits), Expect = 9.4e-10, Sum P(3) = 9.4e-10
Identities = 31/95 (32%), Positives = 52/95 (54%)
Query: 24 FEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKT 83
FE C L + L+ LK + G P+Q+ + I GL RD+ ++ TGSGKT
Sbjct: 205 FEHCSLPEV--LNHNLKKS----GYEVPTPIQM----QMIPVGLLGRDILASADTGSGKT 254
Query: 84 LSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVK 118
++ LP++ + + AL++ PTR+LA+Q++
Sbjct: 255 AAFLLPVIMRALFES-KTPSALILTPTRELAIQIE 288
Score = 96 (38.9 bits), Expect = 9.4e-10, Sum P(3) = 9.4e-10
Identities = 37/113 (32%), Positives = 55/113 (48%)
Query: 134 LAVGQSSIADEISELIKRPK---LEAGICYDPEDVLQELQSAVDILVATPGRLMDHINAT 190
LA+ A E+ + R K L G+ P+ L LQ V +++ATPGRL+D I +
Sbjct: 283 LAIQIERQAKELMSGLPRMKTVLLVGGLPLPPQ--LYRLQQHVKVIIATPGRLLDIIKQS 340
Query: 191 RGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSA 243
L + +VVDE D +L+ +Q + +L EN +D T L SA
Sbjct: 341 -SVELCGVKIVVVDEADTMLKMGFQQQVLDIL-------ENIPNDCQTILVSA 385
Score = 53 (23.7 bits), Expect = 9.4e-10, Sum P(3) = 9.4e-10
Identities = 28/109 (25%), Positives = 50/109 (45%)
Query: 270 MVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLP-ERLESYKLICE--SKLKPLYLVAL 326
+++SAT+ +LA LH+P+ + TGE LP + L E +K K L+ +
Sbjct: 381 ILVSATIPTSIEQLASQLLHNPVRIITGEKN--LPCANVRQIILWVEDPAKKKKLFEILN 438
Query: 327 LQSLGEEKCIVFTSSVESTHRLCTLLNHFGELR-IKI-KEYSGLQRQSV 373
+ L + +VF L + L+ I I E S ++R+++
Sbjct: 439 DKKLFKPPVLVFVDCKLGADLLSEAVQKITGLKSISIHSEKSQIERKNI 487
>TIGR_CMR|CPS_1590 [details] [associations]
symbol:CPS_1590 "ATP-dependent RNA helicase, DEAD box
family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 RefSeq:YP_268332.1 ProteinModelPortal:Q485D3
STRING:Q485D3 GeneID:3522084 KEGG:cps:CPS_1590 PATRIC:21466379
OMA:AISECGY ProtClustDB:CLSK768209
BioCyc:CPSY167879:GI48-1671-MONOMER Uniprot:Q485D3
Length = 455
Score = 168 (64.2 bits), Expect = 1.2e-09, P = 1.2e-09
Identities = 52/180 (28%), Positives = 96/180 (53%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFER-DLCINSPTGSGKTLSYALPIVQT 93
L L A++ G +L P+Q QE I P + + DL ++ TG+GKT +++LPI+
Sbjct: 8 LSADLLKAVKACGYKNLTPIQ----QEAI-PVIRQGVDLLASAQTGTGKTAAFSLPILDA 62
Query: 94 LSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPK 153
++ +A ++ T + + + K A+ L+ + + +AD I + +
Sbjct: 63 IA-KANHAAKSSTT-STDENSAEEKSASGQAIRALILTPTRELA-NQVADNIKQFSQYLP 119
Query: 154 LEAGICYDPEDVLQE---LQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLL 210
+++G+ Y + + L+ +D+LVATPGRL++H+ A R L + +LV+DE DR+L
Sbjct: 120 IKSGVVYGGGKMASQTKMLKQGLDVLVATPGRLLEHL-ALRNVDLSQVKFLVLDEADRML 178
>UNIPROTKB|O05855 [details] [associations]
symbol:rhlE "PROBABLE ATP-DEPENDENT RNA HELICASE RHLE"
species:83332 "Mycobacterium tuberculosis H37Rv" [GO:0005618 "cell
wall" evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005618
GenomeReviews:AE000516_GR GenomeReviews:AL123456_GR GO:GO:0003676
EMBL:BX842582 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081
HOGENOM:HOG000268807 EMBL:CP003248 PIR:D70595 RefSeq:NP_217727.1
RefSeq:NP_337835.1 RefSeq:YP_006516683.1 SMR:O05855
EnsemblBacteria:EBMYCT00000003215 EnsemblBacteria:EBMYCT00000071518
GeneID:13318029 GeneID:888840 GeneID:923099 KEGG:mtc:MT3307
KEGG:mtu:Rv3211 KEGG:mtv:RVBD_3211 PATRIC:18129030
TubercuList:Rv3211 OMA:RWQLIDK ProtClustDB:CLSK792349
Uniprot:O05855
Length = 527
Score = 169 (64.5 bits), Expect = 1.2e-09, P = 1.2e-09
Identities = 59/201 (29%), Positives = 96/201 (47%)
Query: 42 ALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL-SNRAVR 100
AL GI F +Q + T+ L D+ + TG GKT ++ +P++Q + S R
Sbjct: 24 ALGEEGIKRPFAIQ----ELTLPLALDGEDVIGQARTGMGKTFAFGVPLLQRITSGDGTR 79
Query: 101 CL----RALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEA 156
L RALVV+PTR+L LQV D A L+ G + A + + +
Sbjct: 80 PLTGAPRALVVVPTRELCLQVTDDLATAGKY--LTAG---PDTDDAAAVRRRLSVVSIYG 134
Query: 157 GICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQA 216
G Y+P+ ++ L++ D++V TPGRL+D L L LV+DE D +L +
Sbjct: 135 GRPYEPQ--IEALRAGADVVVGTPGRLLDLCQQGH-LQLGGLSVLVLDEADEMLDLGFLP 191
Query: 217 WLPTVLQLTRSDNENRFSDAS 237
+ +L+ +D ++ A+
Sbjct: 192 DIERILRQIPADRQSMLFSAT 212
>UNIPROTKB|E1BGI6 [details] [associations]
symbol:DDX54 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0030331 "estrogen receptor binding" evidence=IEA]
[GO:0006396 "RNA processing" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=IEA] [GO:0003714 "transcription corepressor activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012541 Pfam:PF00270 Pfam:PF00271
Pfam:PF08147 ProDom:PD024971 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003714 GO:GO:0005730
GO:GO:0003723 GO:GO:0006396 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 InterPro:IPR014014 PROSITE:PS51195
OMA:FYIPYRP GeneTree:ENSGT00550000075100 EMBL:DAAA02045421
IPI:IPI00690851 Ensembl:ENSBTAT00000029525 Uniprot:E1BGI6
Length = 877
Score = 126 (49.4 bits), Expect = 1.3e-09, Sum P(2) = 1.3e-09
Identities = 30/104 (28%), Positives = 53/104 (50%)
Query: 52 FPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRC-LRALVVLPT 110
+ V + ++TI L +D+ + TGSGKT + +P+ + L + + RAL++ PT
Sbjct: 116 YKVPTPIQRKTIPMILDGKDVVAMARTGSGKTACFLIPMFERLKTHSAQTGARALILSPT 175
Query: 111 RDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKL 154
R+LALQ + GL L +G + D+ + L + P +
Sbjct: 176 RELALQTMKFTKELGKFTGLKTALILGGDKMEDQFAALHENPDI 219
Score = 94 (38.1 bits), Expect = 1.3e-09, Sum P(2) = 1.3e-09
Identities = 21/60 (35%), Positives = 31/60 (51%)
Query: 163 EDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVL 222
ED L DI++ATPGRL+ H+ L+ + Y+V DE DRL + L ++
Sbjct: 207 EDQFAALHENPDIIIATPGRLV-HVAVEMNLKLQSVEYVVFDEADRLFEMGFAEQLQEII 265
>UNIPROTKB|Q8TDD1 [details] [associations]
symbol:DDX54 "ATP-dependent RNA helicase DDX54"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0004004
"ATP-dependent RNA helicase activity" evidence=IDA] [GO:0003714
"transcription corepressor activity" evidence=IDA] [GO:0005102
"receptor binding" evidence=IDA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0006396
"RNA processing" evidence=IDA] [GO:0016070 "RNA metabolic process"
evidence=IDA] [GO:0030331 "estrogen receptor binding" evidence=IDA]
[GO:0030520 "intracellular estrogen receptor signaling pathway"
evidence=TAS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012541 Pfam:PF00270 Pfam:PF00271
Pfam:PF08147 ProDom:PD024971 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003714 GO:GO:0005730
GO:GO:0006355 GO:GO:0006351 GO:GO:0003723 GO:GO:0006396
GO:GO:0030331 GO:GO:0030520 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K14808 HOGENOM:HOG000246455 OMA:FYIPYRP
EMBL:AF478457 EMBL:AC089999 EMBL:AY148094 EMBL:BC005848
IPI:IPI00152510 IPI:IPI00879999 RefSeq:NP_001104792.1
RefSeq:NP_076977.3 UniGene:Hs.506861 ProteinModelPortal:Q8TDD1
SMR:Q8TDD1 IntAct:Q8TDD1 STRING:Q8TDD1 PhosphoSite:Q8TDD1
DMDM:46576615 SWISS-2DPAGE:Q8TDD1 PaxDb:Q8TDD1 PRIDE:Q8TDD1
DNASU:79039 Ensembl:ENST00000306014 Ensembl:ENST00000314045
GeneID:79039 KEGG:hsa:79039 UCSC:uc001tup.3 UCSC:uc001tuq.4
CTD:79039 GeneCards:GC12M113595 HGNC:HGNC:20084 HPA:HPA028244
MIM:611665 neXtProt:NX_Q8TDD1 PharmGKB:PA134992026
HOVERGEN:HBG051333 InParanoid:Q8TDD1 ChiTaRS:DDX54 GenomeRNAi:79039
NextBio:67773 ArrayExpress:Q8TDD1 Bgee:Q8TDD1 CleanEx:HS_DDX54
Genevestigator:Q8TDD1 GermOnline:ENSG00000123064 Uniprot:Q8TDD1
Length = 881
Score = 126 (49.4 bits), Expect = 1.3e-09, Sum P(2) = 1.3e-09
Identities = 31/104 (29%), Positives = 53/104 (50%)
Query: 52 FPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRC-LRALVVLPT 110
+ V + ++TI L +D+ + TGSGKT + LP+ + L + + RAL++ PT
Sbjct: 116 YKVPTPIQRKTIPVILDGKDVVAMARTGSGKTACFLLPMFERLKTHSAQTGARALILSPT 175
Query: 111 RDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKL 154
R+LALQ + GL L +G + D+ + L + P +
Sbjct: 176 RELALQTLKFTKELGKFTGLKTALILGGDRMEDQFAALHENPDI 219
Score = 94 (38.1 bits), Expect = 1.3e-09, Sum P(2) = 1.3e-09
Identities = 21/60 (35%), Positives = 31/60 (51%)
Query: 163 EDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVL 222
ED L DI++ATPGRL+ H+ L+ + Y+V DE DRL + L ++
Sbjct: 207 EDQFAALHENPDIIIATPGRLV-HVAVEMSLKLQSVEYVVFDEADRLFEMGFAEQLQEII 265
>SGD|S000000346 [details] [associations]
symbol:MAK5 "Essential nucleolar protein" species:4932
"Saccharomyces cerevisiae" [GO:0000466 "maturation of 5.8S rRNA
from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
evidence=IMP] [GO:0000463 "maturation of LSU-rRNA from tricistronic
rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IMP]
[GO:0042273 "ribosomal large subunit biogenesis" evidence=IMP]
[GO:0042254 "ribosome biogenesis" evidence=IEA] [GO:0006364 "rRNA
processing" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA;IDA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=TAS] [GO:0016787 "hydrolase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 SGD:S000000346 GO:GO:0005524 GO:GO:0005730
EMBL:BK006936 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0000463 GO:GO:0004004 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0000466 KO:K14805
HOGENOM:HOG000290702 GeneTree:ENSGT00550000074847 EMBL:X78937
OrthoDB:EOG44J5S7 EMBL:Z36011 PIR:S46011 RefSeq:NP_009700.1
ProteinModelPortal:P38112 SMR:P38112 DIP:DIP-6337N IntAct:P38112
MINT:MINT-612928 STRING:P38112 PaxDb:P38112 PeptideAtlas:P38112
EnsemblFungi:YBR142W GeneID:852439 KEGG:sce:YBR142W CYGD:YBR142w
OMA:HLPRAAD NextBio:971336 Genevestigator:P38112 GermOnline:YBR142W
Uniprot:P38112
Length = 773
Score = 171 (65.3 bits), Expect = 1.3e-09, P = 1.3e-09
Identities = 86/354 (24%), Positives = 164/354 (46%)
Query: 20 DVSLFEDCPLDHLP---CLDPRLKVALQNM-GISSLFPVQVAVWQETIGPGLFER-DLCI 74
D+++ + P++ LP L P LQ++ ++ L P ++ +++I P + + D+
Sbjct: 158 DINIDDISPVN-LPEWTNLAPLSMTILQSLQNLNFLRPTEIQ--KKSI-PVIMQGVDVMG 213
Query: 75 NSPTGSGKTLSYALPIVQTL-SNRAVRCLR--ALVVLPTRDLALQVKDVFAAIAPAVGLS 131
+ TGSGKTL+Y +PIV+ L SN + + + +L+ PTR+LA QV D I V
Sbjct: 214 KASTGSGKTLAYGIPIVEKLISNFSQKNKKPISLIFTPTRELAHQVTDHLKKICEPV--- 270
Query: 132 VGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATR 191
LA Q SI L G+ + L + ++ I++ATPGR ++ +
Sbjct: 271 --LAKSQYSILS----------LTGGLSIQKQQRLLKYDNSGQIVIATPGRFLELLEKDN 318
Query: 192 GFT--LEHLCYLVVDETDRLLREA----YQAWLPTVLQLTRSDNENRFSDAS---TFLPS 242
+ L++DE DRLL++ ++ + +L R + EN + T + S
Sbjct: 319 TLIKRFSKVNTLILDEADRLLQDGHFDEFEKIIKHLLVERRKNRENSEGSSKIWQTLIFS 378
Query: 243 AFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYK 302
A S+ + R KD+ + + L+A + +K+ + P+ + T K
Sbjct: 379 ATFSIDLFDKLSSSRQVKDRRFKNN-EDELNAVIQHLMSKI-HFN-SKPVIIDTNPES-K 434
Query: 303 LPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFG 356
+ +++ + C + LY L ++ ++F ++++S +L LN+ G
Sbjct: 435 VSSQIKESLIECPPLERDLYCYYFL-TMFPGTTLIFCNAIDSVKKLTVYLNNLG 487
>UNIPROTKB|Q5T1V6 [details] [associations]
symbol:DDX59 "Probable ATP-dependent RNA helicase DDX59"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0046872 "metal ion
binding" evidence=IEA] [GO:0005622 "intracellular" evidence=IDA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0046872
GO:GO:0003723 GO:GO:0005622 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR007529 Pfam:PF04438 PROSITE:PS51083
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
EMBL:AL136611 EMBL:AL445483 EMBL:BC014183 EMBL:BC041801
IPI:IPI00010449 IPI:IPI00217157 RefSeq:NP_001026895.2
UniGene:Hs.497332 PDB:2YQP PDBsum:2YQP ProteinModelPortal:Q5T1V6
SMR:Q5T1V6 PhosphoSite:Q5T1V6 DMDM:74762230 PaxDb:Q5T1V6
PRIDE:Q5T1V6 DNASU:83479 Ensembl:ENST00000331314
Ensembl:ENST00000447706 GeneID:83479 KEGG:hsa:83479 UCSC:uc009wzk.3
CTD:83479 GeneCards:GC01M200594 HGNC:HGNC:25360 HPA:HPA047166
neXtProt:NX_Q5T1V6 PharmGKB:PA142672000 HOGENOM:HOG000006599
HOVERGEN:HBG106120 InParanoid:Q5T1V6 OMA:VTRPIID PhylomeDB:Q5T1V6
EvolutionaryTrace:Q5T1V6 GenomeRNAi:83479 NextBio:72419
ArrayExpress:Q5T1V6 Bgee:Q5T1V6 CleanEx:HS_DDX59
Genevestigator:Q5T1V6 Uniprot:Q5T1V6
Length = 619
Score = 108 (43.1 bits), Expect = 1.3e-09, Sum P(3) = 1.3e-09
Identities = 31/95 (32%), Positives = 52/95 (54%)
Query: 24 FEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKT 83
FE C L + L+ LK + G P+Q+ + I GL RD+ ++ TGSGKT
Sbjct: 205 FEHCSLPEV--LNHNLKKS----GYEVPTPIQM----QMIPVGLLGRDILASADTGSGKT 254
Query: 84 LSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVK 118
++ LP++ + + AL++ PTR+LA+Q++
Sbjct: 255 AAFLLPVIMRALFES-KTPSALILTPTRELAIQIE 288
Score = 96 (38.9 bits), Expect = 1.3e-09, Sum P(3) = 1.3e-09
Identities = 37/113 (32%), Positives = 55/113 (48%)
Query: 134 LAVGQSSIADEISELIKRPK---LEAGICYDPEDVLQELQSAVDILVATPGRLMDHINAT 190
LA+ A E+ + R K L G+ P+ L LQ V +++ATPGRL+D I +
Sbjct: 283 LAIQIERQAKELMSGLPRMKTVLLVGGLPLPPQ--LYRLQQHVKVIIATPGRLLDIIKQS 340
Query: 191 RGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSA 243
L + +VVDE D +L+ +Q + +L EN +D T L SA
Sbjct: 341 -SVELCGVKIVVVDEADTMLKMGFQQQVLDIL-------ENIPNDCQTILVSA 385
Score = 53 (23.7 bits), Expect = 1.3e-09, Sum P(3) = 1.3e-09
Identities = 28/109 (25%), Positives = 50/109 (45%)
Query: 270 MVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLP-ERLESYKLICE--SKLKPLYLVAL 326
+++SAT+ +LA LH+P+ + TGE LP + L E +K K L+ +
Sbjct: 381 ILVSATIPTSIEQLASQLLHNPVRIITGEKN--LPCANVRQIILWVEDPAKKKKLFEILN 438
Query: 327 LQSLGEEKCIVFTSSVESTHRLCTLLNHFGELR-IKI-KEYSGLQRQSV 373
+ L + +VF L + L+ I I E S ++R+++
Sbjct: 439 DKKLFKPPVLVFVDCKLGADLLSEAVQKITGLKSISIHSEKSQIERKNI 487
>UNIPROTKB|I3LLD5 [details] [associations]
symbol:I3LLD5 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00530000062880 Ensembl:ENSSSCT00000032168 OMA:SKRERIM
Uniprot:I3LLD5
Length = 401
Score = 128 (50.1 bits), Expect = 1.4e-09, Sum P(2) = 1.4e-09
Identities = 30/102 (29%), Positives = 59/102 (57%)
Query: 57 AVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQ 116
A+ Q I P + D+ + +G+GKT ++A+ I+Q + ++ +ALV+ PTR+LA Q
Sbjct: 57 AIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIE-LDLKATQALVLAPTRELAQQ 115
Query: 117 VKDVFAAIAPAVGLSVGLAVGQSSIADEISEL-IKRPKLEAG 157
++ V A+ +G S +G +++ E+ +L ++ P + G
Sbjct: 116 IQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVG 157
Score = 82 (33.9 bits), Expect = 1.4e-09, Sum P(2) = 1.4e-09
Identities = 20/66 (30%), Positives = 37/66 (56%)
Query: 166 LQELQ-SAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQL 224
+Q+LQ A I+V TPGR+ D +N R + +++ V+DE D +L ++ + + Q
Sbjct: 144 VQKLQMEAPHIIVGTPGRVFDMLNR-RYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQK 202
Query: 225 TRSDNE 230
S+ +
Sbjct: 203 LNSNTQ 208
Score = 47 (21.6 bits), Expect = 5.7e-06, Sum P(2) = 5.7e-06
Identities = 20/73 (27%), Positives = 36/73 (49%)
Query: 255 VERGFKDKPYPRLVKM-------VLSATLTQDPNKLAQLDLHHPL--FLTT-GETRYKLP 304
+ RGFKD+ Y K+ +LSAT+ D ++ + + P+ LT G ++ +
Sbjct: 188 LSRGFKDQIYDIFQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRIXLTLEGIRQFYIN 247
Query: 305 ERLESYKL--ICE 315
E +KL +C+
Sbjct: 248 VEREEWKLDTLCD 260
>UNIPROTKB|Q3SZ54 [details] [associations]
symbol:EIF4A1 "Eukaryotic initiation factor 4A-I"
species:9913 "Bos taurus" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003743 "translation initiation factor activity" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003743 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
HOGENOM:HOG000268797 InterPro:IPR014014 PROSITE:PS51195
HOVERGEN:HBG107989 GeneTree:ENSGT00530000062880 EMBL:BC103130
IPI:IPI00698793 RefSeq:NP_001029400.1 UniGene:Bt.14169
ProteinModelPortal:Q3SZ54 SMR:Q3SZ54 STRING:Q3SZ54 PRIDE:Q3SZ54
Ensembl:ENSBTAT00000000144 GeneID:504958 KEGG:bta:504958 CTD:1973
InParanoid:Q3SZ54 KO:K03257 OMA:IKMFILD OrthoDB:EOG4640C1
NextBio:20866906 Uniprot:Q3SZ54
Length = 406
Score = 128 (50.1 bits), Expect = 1.5e-09, Sum P(2) = 1.5e-09
Identities = 30/102 (29%), Positives = 59/102 (57%)
Query: 57 AVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQ 116
A+ Q I P + D+ + +G+GKT ++A+ I+Q + ++ +ALV+ PTR+LA Q
Sbjct: 57 AIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIE-LDLKATQALVLAPTRELAQQ 115
Query: 117 VKDVFAAIAPAVGLSVGLAVGQSSIADEISEL-IKRPKLEAG 157
++ V A+ +G S +G +++ E+ +L ++ P + G
Sbjct: 116 IQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVG 157
Score = 82 (33.9 bits), Expect = 1.5e-09, Sum P(2) = 1.5e-09
Identities = 20/66 (30%), Positives = 37/66 (56%)
Query: 166 LQELQ-SAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQL 224
+Q+LQ A I+V TPGR+ D +N R + +++ V+DE D +L ++ + + Q
Sbjct: 144 VQKLQMEAPHIIVGTPGRVFDMLNR-RYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQK 202
Query: 225 TRSDNE 230
S+ +
Sbjct: 203 LNSNTQ 208
Score = 46 (21.3 bits), Expect = 7.5e-06, Sum P(2) = 7.5e-06
Identities = 20/94 (21%), Positives = 42/94 (44%)
Query: 255 VERGFKDKPYPRLVKM-------VLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERL 307
+ RGFKD+ Y K+ +LSAT+ D ++ + + P+ + + L
Sbjct: 188 LSRGFKDQIYDIFQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIR 247
Query: 308 ESYKLICESKLKPLYLVALLQSLGEEKCIVFTSS 341
+ Y + + K L L ++L + ++F ++
Sbjct: 248 QFYINVEREEWKLDTLCDLYETLTITQAVIFINT 281
>UNIPROTKB|F1P895 [details] [associations]
symbol:EIF4A1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00530000062880 OMA:PILEMED EMBL:AAEX03003619
EMBL:AAEX03003621 EMBL:AAEX03003620 Ensembl:ENSCAFT00000026357
Uniprot:F1P895
Length = 406
Score = 128 (50.1 bits), Expect = 1.5e-09, Sum P(2) = 1.5e-09
Identities = 30/102 (29%), Positives = 59/102 (57%)
Query: 57 AVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQ 116
A+ Q I P + D+ + +G+GKT ++A+ I+Q + ++ +ALV+ PTR+LA Q
Sbjct: 57 AIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIE-LDLKATQALVLAPTRELAQQ 115
Query: 117 VKDVFAAIAPAVGLSVGLAVGQSSIADEISEL-IKRPKLEAG 157
++ V A+ +G S +G +++ E+ +L ++ P + G
Sbjct: 116 IQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVG 157
Score = 82 (33.9 bits), Expect = 1.5e-09, Sum P(2) = 1.5e-09
Identities = 20/66 (30%), Positives = 37/66 (56%)
Query: 166 LQELQ-SAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQL 224
+Q+LQ A I+V TPGR+ D +N R + +++ V+DE D +L ++ + + Q
Sbjct: 144 VQKLQMEAPHIIVGTPGRVFDMLNR-RYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQK 202
Query: 225 TRSDNE 230
S+ +
Sbjct: 203 LNSNTQ 208
Score = 46 (21.3 bits), Expect = 7.5e-06, Sum P(2) = 7.5e-06
Identities = 20/94 (21%), Positives = 42/94 (44%)
Query: 255 VERGFKDKPYPRLVKM-------VLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERL 307
+ RGFKD+ Y K+ +LSAT+ D ++ + + P+ + + L
Sbjct: 188 LSRGFKDQIYDIFQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIR 247
Query: 308 ESYKLICESKLKPLYLVALLQSLGEEKCIVFTSS 341
+ Y + + K L L ++L + ++F ++
Sbjct: 248 QFYINVEREEWKLDTLCDLYETLTITQAVIFINT 281
>UNIPROTKB|J9NY67 [details] [associations]
symbol:EIF4A1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00530000062880 CTD:1973 KO:K03257 OMA:IKMFILD
EMBL:AAEX03006506 EMBL:AAEX03006505 RefSeq:NP_001238871.1
ProteinModelPortal:J9NY67 Ensembl:ENSCAFT00000014379
GeneID:100688577 KEGG:cfa:100688577 Uniprot:J9NY67
Length = 406
Score = 128 (50.1 bits), Expect = 1.5e-09, Sum P(2) = 1.5e-09
Identities = 30/102 (29%), Positives = 59/102 (57%)
Query: 57 AVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQ 116
A+ Q I P + D+ + +G+GKT ++A+ I+Q + ++ +ALV+ PTR+LA Q
Sbjct: 57 AIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIE-LDLKATQALVLAPTRELAQQ 115
Query: 117 VKDVFAAIAPAVGLSVGLAVGQSSIADEISEL-IKRPKLEAG 157
++ V A+ +G S +G +++ E+ +L ++ P + G
Sbjct: 116 IQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVG 157
Score = 82 (33.9 bits), Expect = 1.5e-09, Sum P(2) = 1.5e-09
Identities = 20/66 (30%), Positives = 37/66 (56%)
Query: 166 LQELQ-SAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQL 224
+Q+LQ A I+V TPGR+ D +N R + +++ V+DE D +L ++ + + Q
Sbjct: 144 VQKLQMEAPHIIVGTPGRVFDMLNR-RYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQK 202
Query: 225 TRSDNE 230
S+ +
Sbjct: 203 LNSNTQ 208
Score = 46 (21.3 bits), Expect = 7.5e-06, Sum P(2) = 7.5e-06
Identities = 20/94 (21%), Positives = 42/94 (44%)
Query: 255 VERGFKDKPYPRLVKM-------VLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERL 307
+ RGFKD+ Y K+ +LSAT+ D ++ + + P+ + + L
Sbjct: 188 LSRGFKDQIYDIFQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIR 247
Query: 308 ESYKLICESKLKPLYLVALLQSLGEEKCIVFTSS 341
+ Y + + K L L ++L + ++F ++
Sbjct: 248 QFYINVEREEWKLDTLCDLYETLTITQAVIFINT 281
>UNIPROTKB|P60842 [details] [associations]
symbol:EIF4A1 "Eukaryotic initiation factor 4A-I"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003743 "translation initiation factor
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0019048 "virus-host interaction" evidence=IEA] [GO:0003729
"mRNA binding" evidence=TAS] [GO:0004386 "helicase activity"
evidence=TAS] [GO:0000339 "RNA cap binding" evidence=TAS]
[GO:0008135 "translation factor activity, nucleic acid binding"
evidence=TAS] [GO:0016281 "eukaryotic translation initiation factor
4F complex" evidence=TAS] [GO:0005515 "protein binding"
evidence=IPI] [GO:0000288 "nuclear-transcribed mRNA catabolic
process, deadenylation-dependent decay" evidence=TAS] [GO:0000289
"nuclear-transcribed mRNA poly(A) tail shortening" evidence=TAS]
[GO:0005829 "cytosol" evidence=TAS] [GO:0006412 "translation"
evidence=TAS] [GO:0006413 "translational initiation" evidence=TAS]
[GO:0010467 "gene expression" evidence=TAS] [GO:0016070 "RNA
metabolic process" evidence=TAS] [GO:0016071 "mRNA metabolic
process" evidence=TAS] [GO:0019221 "cytokine-mediated signaling
pathway" evidence=TAS] [GO:0044267 "cellular protein metabolic
process" evidence=TAS] Reactome:REACT_71 Reactome:REACT_21257
Reactome:REACT_17015 InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005829 GO:GO:0005524
Reactome:REACT_6900 EMBL:CH471108 GO:GO:0019048
Pathway_Interaction_DB:mtor_4pathway GO:GO:0006413 GO:GO:0016281
GO:GO:0031100 GO:GO:0003729 GO:GO:0019221 GO:GO:0008135
GO:GO:0004386 GO:GO:0003743 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 GO:GO:0000289 eggNOG:COG0513
HOGENOM:HOG000268797 InterPro:IPR014014 PROSITE:PS51195
HOVERGEN:HBG107989 Reactome:REACT_1762 CTD:1973 KO:K03257
OMA:IKMFILD OrthoDB:EOG4640C1 EMBL:D13748 EMBL:BT019880
EMBL:BT019881 EMBL:AK312630 EMBL:AC016876 EMBL:BC006210
EMBL:BC009585 EMBL:BC073752 IPI:IPI00025491 PIR:S33681
RefSeq:NP_001191439.1 RefSeq:NP_001407.1 UniGene:Hs.129673 PDB:2G9N
PDB:2ZU6 PDB:3EIQ PDBsum:2G9N PDBsum:2ZU6 PDBsum:3EIQ
ProteinModelPortal:P60842 SMR:P60842 DIP:DIP-29755N IntAct:P60842
MINT:MINT-5001111 STRING:P60842 PhosphoSite:P60842 DMDM:46397463
PaxDb:P60842 PRIDE:P60842 DNASU:1973 Ensembl:ENST00000293831
Ensembl:ENST00000577269 GeneID:1973 KEGG:hsa:1973 UCSC:uc002gho.2
GeneCards:GC17P007476 HGNC:HGNC:3282 HPA:CAB011689 MIM:602641
neXtProt:NX_P60842 PharmGKB:PA27710 PhylomeDB:P60842 ChiTaRS:EIF4A1
EvolutionaryTrace:P60842 GenomeRNAi:1973 NextBio:7987
ArrayExpress:P60842 Bgee:P60842 CleanEx:HS_EIF4A1
Genevestigator:P60842 GermOnline:ENSG00000161960 GO:GO:0000339
Uniprot:P60842
Length = 406
Score = 128 (50.1 bits), Expect = 1.5e-09, Sum P(2) = 1.5e-09
Identities = 30/102 (29%), Positives = 59/102 (57%)
Query: 57 AVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQ 116
A+ Q I P + D+ + +G+GKT ++A+ I+Q + ++ +ALV+ PTR+LA Q
Sbjct: 57 AIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIE-LDLKATQALVLAPTRELAQQ 115
Query: 117 VKDVFAAIAPAVGLSVGLAVGQSSIADEISEL-IKRPKLEAG 157
++ V A+ +G S +G +++ E+ +L ++ P + G
Sbjct: 116 IQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVG 157
Score = 82 (33.9 bits), Expect = 1.5e-09, Sum P(2) = 1.5e-09
Identities = 20/66 (30%), Positives = 37/66 (56%)
Query: 166 LQELQ-SAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQL 224
+Q+LQ A I+V TPGR+ D +N R + +++ V+DE D +L ++ + + Q
Sbjct: 144 VQKLQMEAPHIIVGTPGRVFDMLNR-RYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQK 202
Query: 225 TRSDNE 230
S+ +
Sbjct: 203 LNSNTQ 208
Score = 46 (21.3 bits), Expect = 7.5e-06, Sum P(2) = 7.5e-06
Identities = 20/94 (21%), Positives = 42/94 (44%)
Query: 255 VERGFKDKPYPRLVKM-------VLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERL 307
+ RGFKD+ Y K+ +LSAT+ D ++ + + P+ + + L
Sbjct: 188 LSRGFKDQIYDIFQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIR 247
Query: 308 ESYKLICESKLKPLYLVALLQSLGEEKCIVFTSS 341
+ Y + + K L L ++L + ++F ++
Sbjct: 248 QFYINVEREEWKLDTLCDLYETLTITQAVIFINT 281
>UNIPROTKB|A6M928 [details] [associations]
symbol:EIF4A1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0003743
"translation initiation factor activity" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003743 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 HOGENOM:HOG000268797
InterPro:IPR014014 PROSITE:PS51195 HOVERGEN:HBG107989
GeneTree:ENSGT00530000062880 CTD:1973 KO:K03257 OMA:IKMFILD
OrthoDB:EOG4640C1 EMBL:CU914279 EMBL:DQ351283 RefSeq:NP_001093666.1
UniGene:Ssc.22034 ProteinModelPortal:A6M928 SMR:A6M928 PRIDE:A6M928
Ensembl:ENSSSCT00000019541 GeneID:100101929 KEGG:ssc:100101929
Uniprot:A6M928
Length = 406
Score = 128 (50.1 bits), Expect = 1.5e-09, Sum P(2) = 1.5e-09
Identities = 30/102 (29%), Positives = 59/102 (57%)
Query: 57 AVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQ 116
A+ Q I P + D+ + +G+GKT ++A+ I+Q + ++ +ALV+ PTR+LA Q
Sbjct: 57 AIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIE-LDLKATQALVLAPTRELAQQ 115
Query: 117 VKDVFAAIAPAVGLSVGLAVGQSSIADEISEL-IKRPKLEAG 157
++ V A+ +G S +G +++ E+ +L ++ P + G
Sbjct: 116 IQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVG 157
Score = 82 (33.9 bits), Expect = 1.5e-09, Sum P(2) = 1.5e-09
Identities = 20/66 (30%), Positives = 37/66 (56%)
Query: 166 LQELQ-SAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQL 224
+Q+LQ A I+V TPGR+ D +N R + +++ V+DE D +L ++ + + Q
Sbjct: 144 VQKLQMEAPHIIVGTPGRVFDMLNR-RYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQK 202
Query: 225 TRSDNE 230
S+ +
Sbjct: 203 LNSNTQ 208
Score = 46 (21.3 bits), Expect = 7.5e-06, Sum P(2) = 7.5e-06
Identities = 20/94 (21%), Positives = 42/94 (44%)
Query: 255 VERGFKDKPYPRLVKM-------VLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERL 307
+ RGFKD+ Y K+ +LSAT+ D ++ + + P+ + + L
Sbjct: 188 LSRGFKDQIYDIFQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIR 247
Query: 308 ESYKLICESKLKPLYLVALLQSLGEEKCIVFTSS 341
+ Y + + K L L ++L + ++F ++
Sbjct: 248 QFYINVEREEWKLDTLCDLYETLTITQAVIFINT 281
>MGI|MGI:95303 [details] [associations]
symbol:Eif4a1 "eukaryotic translation initiation factor 4A1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0003743 "translation
initiation factor activity" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0006412 "translation" evidence=IEA] [GO:0006413 "translational
initiation" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 MGI:MGI:95303 GO:GO:0005524
GO:GO:0003743 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 HOGENOM:HOG000268797
InterPro:IPR014014 PROSITE:PS51195 HOVERGEN:HBG107989 CTD:1973
KO:K03257 OMA:IKMFILD OrthoDB:EOG4640C1 EMBL:X03039 EMBL:X03040
EMBL:L36611 EMBL:M22873 EMBL:L36608 EMBL:L36609 EMBL:L36610
EMBL:AB011595 EMBL:AK077429 EMBL:BC049915 IPI:IPI00118676
PIR:JS0039 RefSeq:NP_659207.1 UniGene:Mm.279821 UniGene:Mm.371557
UniGene:Mm.473799 ProteinModelPortal:P60843 SMR:P60843
MINT:MINT-202155 STRING:P60843 PhosphoSite:P60843
REPRODUCTION-2DPAGE:P60843 PaxDb:P60843 PRIDE:P60843
Ensembl:ENSMUST00000163666 GeneID:13681 KEGG:mmu:13681
InParanoid:P60843 NextBio:284438 Bgee:P60843 CleanEx:MM_EIF4A1
Genevestigator:P60843 GermOnline:ENSMUSG00000064241 Uniprot:P60843
Length = 406
Score = 128 (50.1 bits), Expect = 1.5e-09, Sum P(2) = 1.5e-09
Identities = 30/102 (29%), Positives = 59/102 (57%)
Query: 57 AVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQ 116
A+ Q I P + D+ + +G+GKT ++A+ I+Q + ++ +ALV+ PTR+LA Q
Sbjct: 57 AIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIE-LDLKATQALVLAPTRELAQQ 115
Query: 117 VKDVFAAIAPAVGLSVGLAVGQSSIADEISEL-IKRPKLEAG 157
++ V A+ +G S +G +++ E+ +L ++ P + G
Sbjct: 116 IQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVG 157
Score = 82 (33.9 bits), Expect = 1.5e-09, Sum P(2) = 1.5e-09
Identities = 20/66 (30%), Positives = 37/66 (56%)
Query: 166 LQELQ-SAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQL 224
+Q+LQ A I+V TPGR+ D +N R + +++ V+DE D +L ++ + + Q
Sbjct: 144 VQKLQMEAPHIIVGTPGRVFDMLNR-RYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQK 202
Query: 225 TRSDNE 230
S+ +
Sbjct: 203 LNSNTQ 208
Score = 46 (21.3 bits), Expect = 7.5e-06, Sum P(2) = 7.5e-06
Identities = 20/94 (21%), Positives = 42/94 (44%)
Query: 255 VERGFKDKPYPRLVKM-------VLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERL 307
+ RGFKD+ Y K+ +LSAT+ D ++ + + P+ + + L
Sbjct: 188 LSRGFKDQIYDIFQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIR 247
Query: 308 ESYKLICESKLKPLYLVALLQSLGEEKCIVFTSS 341
+ Y + + K L L ++L + ++F ++
Sbjct: 248 QFYINVEREEWKLDTLCDLYETLTITQAVIFINT 281
>UNIPROTKB|Q6P3V8 [details] [associations]
symbol:Eif4a1 "Protein Eif4a1" species:10116 "Rattus
norvegicus" [GO:0003743 "translation initiation factor activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 RGD:735141
GO:GO:0005524 GO:GO:0003743 EMBL:CH473948 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 HOGENOM:HOG000268797
InterPro:IPR014014 PROSITE:PS51195 HOVERGEN:HBG107989
GeneTree:ENSGT00530000062880 CTD:1973 KO:K03257 OMA:IKMFILD
OrthoDB:EOG4640C1 EMBL:BC063812 IPI:IPI00369618 RefSeq:NP_955404.1
UniGene:Rn.91523 SMR:Q6P3V8 STRING:Q6P3V8
Ensembl:ENSRNOT00000049048 GeneID:287436 KEGG:rno:287436
InParanoid:Q6P3V8 NextBio:626135 Genevestigator:Q6P3V8
Uniprot:Q6P3V8
Length = 406
Score = 128 (50.1 bits), Expect = 1.5e-09, Sum P(2) = 1.5e-09
Identities = 30/102 (29%), Positives = 59/102 (57%)
Query: 57 AVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQ 116
A+ Q I P + D+ + +G+GKT ++A+ I+Q + ++ +ALV+ PTR+LA Q
Sbjct: 57 AIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIE-LDLKATQALVLAPTRELAQQ 115
Query: 117 VKDVFAAIAPAVGLSVGLAVGQSSIADEISEL-IKRPKLEAG 157
++ V A+ +G S +G +++ E+ +L ++ P + G
Sbjct: 116 IQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVG 157
Score = 82 (33.9 bits), Expect = 1.5e-09, Sum P(2) = 1.5e-09
Identities = 20/66 (30%), Positives = 37/66 (56%)
Query: 166 LQELQ-SAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQL 224
+Q+LQ A I+V TPGR+ D +N R + +++ V+DE D +L ++ + + Q
Sbjct: 144 VQKLQMEAPHIIVGTPGRVFDMLNR-RYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQK 202
Query: 225 TRSDNE 230
S+ +
Sbjct: 203 LNSNTQ 208
Score = 46 (21.3 bits), Expect = 7.5e-06, Sum P(2) = 7.5e-06
Identities = 20/94 (21%), Positives = 42/94 (44%)
Query: 255 VERGFKDKPYPRLVKM-------VLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERL 307
+ RGFKD+ Y K+ +LSAT+ D ++ + + P+ + + L
Sbjct: 188 LSRGFKDQIYDIFQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIR 247
Query: 308 ESYKLICESKLKPLYLVALLQSLGEEKCIVFTSS 341
+ Y + + K L L ++L + ++F ++
Sbjct: 248 QFYINVEREEWKLDTLCDLYETLTITQAVIFINT 281
>SGD|S000001767 [details] [associations]
symbol:TIF1 "Translation initiation factor eIF4A"
species:4932 "Saccharomyces cerevisiae" [GO:0003743 "translation
initiation factor activity" evidence=IEA;IMP;IDA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0006413 "translational
initiation" evidence=IEA;IMP;IDA] [GO:0006412 "translation"
evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=IMP;IDA] [GO:0005840 "ribosome" evidence=TAS] [GO:0016281
"eukaryotic translation initiation factor 4F complex"
evidence=IGI;ISS] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 SGD:S000001767
SGD:S000003674 GO:GO:0005524 GO:GO:0005737 EMBL:BK006943
EMBL:BK006944 GO:GO:0003743 EMBL:X87371 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 KO:K03854
eggNOG:COG0513 HOGENOM:HOG000268797 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00530000062880 EMBL:U25436 KO:K03257
OMA:IKMFILD OrthoDB:EOG4PG98F EMBL:X12813 EMBL:X12814 EMBL:X58099
EMBL:Z49413 EMBL:Z28284 PIR:S05835 RefSeq:NP_012397.1
RefSeq:NP_012985.3 RefSeq:NP_012987.3 PDB:1FUK PDB:1FUU PDB:1QDE
PDB:1QVA PDB:2VSO PDB:2VSX PDBsum:1FUK PDBsum:1FUU PDBsum:1QDE
PDBsum:1QVA PDBsum:2VSO PDBsum:2VSX ProteinModelPortal:P10081
SMR:P10081 DIP:DIP-4571N IntAct:P10081 MINT:MINT-546056
STRING:P10081 SWISS-2DPAGE:P10081 PaxDb:P10081 EnsemblFungi:YJL138C
EnsemblFungi:YKR059W GeneID:853303 GeneID:853933 GeneID:853935
KEGG:sce:YJL138C KEGG:sce:YKR059W KEGG:sce:YKR061W SABIO-RK:P10081
EvolutionaryTrace:P10081 NextBio:973627 Genevestigator:P10081
GermOnline:YJL138C GermOnline:YKR059W Uniprot:P10081
Length = 395
Score = 118 (46.6 bits), Expect = 1.5e-09, Sum P(3) = 1.5e-09
Identities = 27/92 (29%), Positives = 54/92 (58%)
Query: 57 AVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQ 116
A+ Q I P + D+ + +G+GKT ++++ +Q + +V+ +AL++ PTR+LALQ
Sbjct: 47 AIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDT-SVKAPQALMLAPTRELALQ 105
Query: 117 VKDVFAAIAPAVGLSVGLAVGQSSIADEISEL 148
++ V A+A + + V +G +S ++ L
Sbjct: 106 IQKVVMALAFHMDIKVHACIGGTSFVEDAEGL 137
Score = 74 (31.1 bits), Expect = 1.5e-09, Sum P(3) = 1.5e-09
Identities = 19/62 (30%), Positives = 33/62 (53%)
Query: 163 EDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVL 222
ED + L+ A I+V TPGR+ D+I R F + + ++DE D +L ++ + +
Sbjct: 132 EDA-EGLRDA-QIVVGTPGRVFDNIQRRR-FRTDKIKMFILDEADEMLSSGFKEQIYQIF 188
Query: 223 QL 224
L
Sbjct: 189 TL 190
Score = 55 (24.4 bits), Expect = 1.5e-09, Sum P(3) = 1.5e-09
Identities = 23/104 (22%), Positives = 45/104 (43%)
Query: 258 GFKDKPY------PRLVKMVL-SATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESY 310
GFK++ Y P ++VL SAT+ D ++ + +P+ + + L + Y
Sbjct: 179 GFKEQIYQIFTLLPPTTQVVLLSATMPNDVLEVTTKFMRNPVRILVKKDELTLEGIKQFY 238
Query: 311 KLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNH 354
+ E + K L L S+ + ++F ++ L T L +
Sbjct: 239 VNVEEEEYKYECLTDLYDSISVTQAVIFCNTRRKVEELTTKLRN 282
>SGD|S000003674 [details] [associations]
symbol:TIF2 "Translation initiation factor eIF4A"
species:4932 "Saccharomyces cerevisiae" [GO:0003743 "translation
initiation factor activity" evidence=IEA;ISS;IDA;TAS] [GO:0005886
"plasma membrane" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IEA;ISS;IDA] [GO:0006446 "regulation of translational
initiation" evidence=ISS] [GO:0005840 "ribosome" evidence=TAS]
[GO:0016281 "eukaryotic translation initiation factor 4F complex"
evidence=IGI;ISS] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=IMP] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006412 "translation"
evidence=IEA] [GO:0006413 "translational initiation"
evidence=IEA;TAS] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 SGD:S000001767 SGD:S000003674 GO:GO:0005524
GO:GO:0005737 EMBL:BK006943 EMBL:BK006944 GO:GO:0003743 EMBL:X87371
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
KO:K03854 eggNOG:COG0513 HOGENOM:HOG000268797 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00530000062880 EMBL:U25436 KO:K03257
OMA:IKMFILD OrthoDB:EOG4PG98F EMBL:X12813 EMBL:X12814 EMBL:X58099
EMBL:Z49413 EMBL:Z28284 PIR:S05835 RefSeq:NP_012397.1
RefSeq:NP_012985.3 RefSeq:NP_012987.3 PDB:1FUK PDB:1FUU PDB:1QDE
PDB:1QVA PDB:2VSO PDB:2VSX PDBsum:1FUK PDBsum:1FUU PDBsum:1QDE
PDBsum:1QVA PDBsum:2VSO PDBsum:2VSX ProteinModelPortal:P10081
SMR:P10081 DIP:DIP-4571N IntAct:P10081 MINT:MINT-546056
STRING:P10081 SWISS-2DPAGE:P10081 PaxDb:P10081 EnsemblFungi:YJL138C
EnsemblFungi:YKR059W GeneID:853303 GeneID:853933 GeneID:853935
KEGG:sce:YJL138C KEGG:sce:YKR059W KEGG:sce:YKR061W SABIO-RK:P10081
EvolutionaryTrace:P10081 NextBio:973627 Genevestigator:P10081
GermOnline:YJL138C GermOnline:YKR059W Uniprot:P10081
Length = 395
Score = 118 (46.6 bits), Expect = 1.5e-09, Sum P(3) = 1.5e-09
Identities = 27/92 (29%), Positives = 54/92 (58%)
Query: 57 AVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQ 116
A+ Q I P + D+ + +G+GKT ++++ +Q + +V+ +AL++ PTR+LALQ
Sbjct: 47 AIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDT-SVKAPQALMLAPTRELALQ 105
Query: 117 VKDVFAAIAPAVGLSVGLAVGQSSIADEISEL 148
++ V A+A + + V +G +S ++ L
Sbjct: 106 IQKVVMALAFHMDIKVHACIGGTSFVEDAEGL 137
Score = 74 (31.1 bits), Expect = 1.5e-09, Sum P(3) = 1.5e-09
Identities = 19/62 (30%), Positives = 33/62 (53%)
Query: 163 EDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVL 222
ED + L+ A I+V TPGR+ D+I R F + + ++DE D +L ++ + +
Sbjct: 132 EDA-EGLRDA-QIVVGTPGRVFDNIQRRR-FRTDKIKMFILDEADEMLSSGFKEQIYQIF 188
Query: 223 QL 224
L
Sbjct: 189 TL 190
Score = 55 (24.4 bits), Expect = 1.5e-09, Sum P(3) = 1.5e-09
Identities = 23/104 (22%), Positives = 45/104 (43%)
Query: 258 GFKDKPY------PRLVKMVL-SATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESY 310
GFK++ Y P ++VL SAT+ D ++ + +P+ + + L + Y
Sbjct: 179 GFKEQIYQIFTLLPPTTQVVLLSATMPNDVLEVTTKFMRNPVRILVKKDELTLEGIKQFY 238
Query: 311 KLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNH 354
+ E + K L L S+ + ++F ++ L T L +
Sbjct: 239 VNVEEEEYKYECLTDLYDSISVTQAVIFCNTRRKVEELTTKLRN 282
>UNIPROTKB|E1BII7 [details] [associations]
symbol:DDX43 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005622 "intracellular" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR004087
InterPro:IPR004088 InterPro:IPR011545 Pfam:PF00013 Pfam:PF00270
Pfam:PF00271 PROSITE:PS00039 PROSITE:PS50084 PROSITE:PS51194
SMART:SM00322 SMART:SM00490 GO:GO:0005524 GO:GO:0003723
GO:GO:0005622 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 EMBL:DAAA02025231 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00660000095174 EMBL:DAAA02025227 EMBL:DAAA02025228
EMBL:DAAA02025229 EMBL:DAAA02025230 IPI:IPI00712097
Ensembl:ENSBTAT00000029077 OMA:ANQNIPE Uniprot:E1BII7
Length = 647
Score = 107 (42.7 bits), Expect = 1.6e-09, Sum P(3) = 1.6e-09
Identities = 23/77 (29%), Positives = 42/77 (54%)
Query: 161 DPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPT 220
D + +++L DI++ATPGRL D + L+ + YLV+DE D++L ++ +
Sbjct: 353 DRDGQIKDLSKGADIIIATPGRLHD-LQMNNFVYLKSITYLVLDEADKMLDMGFEPQIMK 411
Query: 221 VLQLTRSDNENRFSDAS 237
+L R D + + A+
Sbjct: 412 ILLDVRPDRQTVMTSAT 428
Score = 93 (37.8 bits), Expect = 1.6e-09, Sum P(3) = 1.6e-09
Identities = 33/93 (35%), Positives = 45/93 (48%)
Query: 30 DHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALP 89
D C P + ++ G P+Q W I G+ DL + TG+GKTLSY +P
Sbjct: 244 DAFHCY-PEVMRNIEKAGFQKPTPIQSQAWP-IILQGI---DLIGVAQTGTGKTLSYLMP 298
Query: 90 -IV----QTLSNRAVRCLRALVVLPTRDLALQV 117
+ Q + RA LV+ PTR+LALQV
Sbjct: 299 GFIHIDSQPVLQRARNGPGMLVLTPTRELALQV 331
Score = 57 (25.1 bits), Expect = 1.6e-09, Sum P(3) = 1.6e-09
Identities = 25/106 (23%), Positives = 44/106 (41%)
Query: 270 MVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQS 329
++ SAT +LAQ L P+ + G + ++ K ++ A + S
Sbjct: 423 VMTSATWPYAVRRLAQSYLKEPMIVYVGTLDLVAVSTVTQNIIVTTEDEKRSHIQAFIDS 482
Query: 330 LG-EEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVR 374
+ ++K I+F S L + L G RI ++ G + QS R
Sbjct: 483 MSPKDKVIIFVSRKAVADHLSSDL---GIRRISVESLHGNREQSDR 525
>UNIPROTKB|A7YWQ8 [details] [associations]
symbol:DDX28 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0042645 "mitochondrial nucleoid" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0003676 GO:GO:0042645 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 CTD:55794 HOGENOM:HOG000008689 HOVERGEN:HBG081424
OMA:RARRDHF OrthoDB:EOG42RD7H GeneTree:ENSGT00670000098028
EMBL:DAAA02046690 EMBL:BC134724 IPI:IPI00689474
RefSeq:NP_001098892.1 UniGene:Bt.3066 Ensembl:ENSBTAT00000005622
GeneID:539411 KEGG:bta:539411 InParanoid:A7YWQ8 NextBio:20877971
Uniprot:A7YWQ8
Length = 545
Score = 168 (64.2 bits), Expect = 1.6e-09, P = 1.6e-09
Identities = 64/195 (32%), Positives = 96/195 (49%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
L+PR+ ALQ + P V TI P L R + + TGSGKTL Y LP++Q L
Sbjct: 133 LEPRVLSALQEAAPEVVRPTTVQ--SSTIPPLLRGRHILCAAETGSGKTLGYMLPLLQRL 190
Query: 95 SNRA------VRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISEL 148
+ + R LV++P+R+LA QV+ A+A +G S+GL V + +S +
Sbjct: 191 LGQPSLYTSRIPAPRGLVLVPSRELAEQVR----AVAQPLGSSLGLRVQELGGGHGMSRV 246
Query: 149 IKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDR 208
R +L + P +VL VATPG L + +L L +LV+DE D
Sbjct: 247 --RLQLSK---HPPAEVL----------VATPGALWKALKGQL-ISLAQLSFLVLDEVDT 290
Query: 209 LLREAYQAWLPTVLQ 223
LL E++ + +L+
Sbjct: 291 LLDESFLELVDYILE 305
>ASPGD|ASPL0000072637 [details] [associations]
symbol:AN4903 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005730
"nucleolus" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005730 GO:GO:0003723 EMBL:BN001303 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:AACD01000084 GO:GO:0006364
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K14778 RefSeq:XP_662507.1 ProteinModelPortal:Q5B3H7
EnsemblFungi:CADANIAT00005498 GeneID:2872706 KEGG:ani:AN4903.2
HOGENOM:HOG000268802 OMA:EVRTVEQ OrthoDB:EOG4PP1RW Uniprot:Q5B3H7
Length = 525
Score = 117 (46.2 bits), Expect = 1.6e-09, Sum P(2) = 1.6e-09
Identities = 38/117 (32%), Positives = 60/117 (51%)
Query: 37 PRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCIN-SPTGSGKTLSYALPIVQTLS 95
P L +L M + +Q A E + G RD CI S TGSGKT+++++PI+Q +
Sbjct: 104 PWLVGSLTTMAVRKPTAIQRACIPEIL-KG---RD-CIGGSRTGSGKTIAFSVPILQKWA 158
Query: 96 NRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRP 152
A+++ PTR+LALQ+ + AI+ + L G + + + EL RP
Sbjct: 159 EDPFGIF-AVILTPTRELALQIFEQIKAISAPQSMKPVLITGGTDMRSQAIELAGRP 214
Score = 97 (39.2 bits), Expect = 1.6e-09, Sum P(2) = 1.6e-09
Identities = 25/57 (43%), Positives = 33/57 (57%)
Query: 168 ELQSAVDILVATPGRLMDHINATRGFT---LEHLCYLVVDETDRLLREAYQAWLPTV 221
EL ++VATPGRL DHIN + T L+ + +V+DE DRLL + LP V
Sbjct: 209 ELAGRPHVVVATPGRLADHINTSGTDTVAGLKRVRMVVLDEADRLLSPGPGSMLPDV 265
>CGD|CAL0004182 [details] [associations]
symbol:HCA4 species:5476 "Candida albicans" [GO:0005634
"nucleus" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
[GO:0006364 "rRNA processing" evidence=IEA] [GO:0004004
"ATP-dependent RNA helicase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 CGD:CAL0004182 GO:GO:0005524 GO:GO:0005730
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 EMBL:AACQ01000023 EMBL:AACQ01000025
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
RefSeq:XP_720233.1 RefSeq:XP_720463.1 ProteinModelPortal:Q5AF95
STRING:Q5AF95 GeneID:3637911 GeneID:3638091 KEGG:cal:CaO19.10227
KEGG:cal:CaO19.2712 KO:K14776 InterPro:IPR025313 Pfam:PF13959
Uniprot:Q5AF95
Length = 765
Score = 144 (55.7 bits), Expect = 1.7e-09, Sum P(2) = 1.7e-09
Identities = 52/156 (33%), Positives = 75/156 (48%)
Query: 21 VSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGS 80
VS F D LP + LK L+ SL +Q ++TI L DL + TGS
Sbjct: 47 VSQFSD-----LPITENTLK-GLKEATFVSLTDIQ----KKTIPIALKGEDLMGTARTGS 96
Query: 81 GKTLSYALPIVQTL-SNRAVRC--LRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVG 137
GKTL++ +P++++L N+ L AL+V PTR+LA+Q+ +V I S GL G
Sbjct: 97 GKTLAFLIPVIESLIRNKITEYDGLAALIVSPTRELAVQIFEVLTKIGKYNTFSAGLVTG 156
Query: 138 QSSIADEISELIKRPKLEAGICYDPEDVLQELQSAV 173
+ E E + R + G P + Q L AV
Sbjct: 157 GKDVQFE-KERVSRMNILVGT---PGRISQHLNEAV 188
Score = 107 (42.7 bits), Expect = 2.0e-05, Sum P(2) = 2.0e-05
Identities = 27/84 (32%), Positives = 45/84 (53%)
Query: 141 IADEISELIKRPKLEAGICYDPEDVLQELQ--SAVDILVATPGRLMDHINATRGFTLEHL 198
I + ++++ K AG+ +DV E + S ++ILV TPGR+ H+N G +L
Sbjct: 136 IFEVLTKIGKYNTFSAGLVTGGKDVQFEKERVSRMNILVGTPGRISQHLNEAVGMETSNL 195
Query: 199 CYLVVDETDRLLREAYQAWLPTVL 222
LV+DE DR L ++ + +L
Sbjct: 196 QVLVLDEADRCLDMGFKKQIDNIL 219
Score = 72 (30.4 bits), Expect = 1.7e-09, Sum P(2) = 1.7e-09
Identities = 24/76 (31%), Positives = 43/76 (56%)
Query: 270 MVLSATLTQDPNKLAQLDLHHP--LFLTTGETRYKLPERLESY--KLICESKLKPLYLVA 325
++ SAT ++ N LA+L L +P + +++ + PE LE Y K+ + KL L+ +
Sbjct: 229 LLFSATQSESVNDLARLSLTNPNKIGVSSDQEVSATPESLEQYYVKVPLDEKLDVLW--S 286
Query: 326 LLQSLGEEKCIVFTSS 341
++S + K +VF SS
Sbjct: 287 FIKSHLKSKILVFFSS 302
>UNIPROTKB|Q9BVQ8 [details] [associations]
symbol:DDX49 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 49,
isoform CRA_a" species:9606 "Homo sapiens" [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
GO:GO:0005524 GO:GO:0003676 EMBL:CH471106 InterPro:IPR014001
PROSITE:PS51192 GO:GO:0008026 EMBL:AC002985 HSSP:P10081
UniGene:Hs.143187 HGNC:HGNC:18684 EMBL:BC000979 IPI:IPI00012192
SMR:Q9BVQ8 MINT:MINT-1410915 STRING:Q9BVQ8 Ensembl:ENST00000438170
HOGENOM:HOG000205323 Uniprot:Q9BVQ8
Length = 254
Score = 109 (43.4 bits), Expect = 1.7e-09, Sum P(2) = 1.7e-09
Identities = 19/45 (42%), Positives = 32/45 (71%)
Query: 168 ELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLRE 212
EL +++ATPGRL DH+ ++ F+++ + +LV+DE DRLL +
Sbjct: 9 ELSRKPHVVIATPGRLADHLRSSNTFSIKKIRFLVMDEADRLLEQ 53
Score = 95 (38.5 bits), Expect = 1.7e-09, Sum P(2) = 1.7e-09
Identities = 27/90 (30%), Positives = 44/90 (48%)
Query: 270 MVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQS 329
++ SATLT +L L + P F + E+L+ L+ K+K YLV L+Q
Sbjct: 76 LLFSATLTDTLRELQGLATNQPFFWEA-QAPVSTVEQLDQRYLLVPEKVKDAYLVHLIQR 134
Query: 330 LGEE----KCIVFTSSVESTHRLCTLLNHF 355
+E I+FT++ ++ LC +L F
Sbjct: 135 FQDEHEDWSIIIFTNTCKTCQILCMMLRKF 164
>UNIPROTKB|Q9KS53 [details] [associations]
symbol:VC1407 "ATP-dependent RNA helicase RhlE"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
[GO:0008152 "metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GenomeReviews:AE003852_GR GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 OMA:FRNLCAI HSSP:P10081 EMBL:AE004219 PIR:D82203
RefSeq:NP_231050.1 ProteinModelPortal:Q9KS53 DNASU:2614039
GeneID:2614039 KEGG:vch:VC1407 PATRIC:20081876
ProtClustDB:CLSK874358 Uniprot:Q9KS53
Length = 397
Score = 112 (44.5 bits), Expect = 2.1e-09, Sum P(2) = 2.1e-09
Identities = 28/70 (40%), Positives = 42/70 (60%)
Query: 70 RDLCINSPTGSGKTLSYALPIVQTL---SNRAVRCLRALVVLPTRDLALQVKDVFAAIAP 126
RDL + TG+GKT S+ LPI++ L + + +RAL+++PTR+LA+QV +
Sbjct: 39 RDLIAAAQTGTGKTASFVLPILEKLRQGQTQRKKRVRALILVPTRELAMQVAEKVEQYGK 98
Query: 127 AVGLSVGLAV 136
GL LAV
Sbjct: 99 DTGLK-SLAV 107
Score = 98 (39.6 bits), Expect = 2.1e-09, Sum P(2) = 2.1e-09
Identities = 23/50 (46%), Positives = 30/50 (60%)
Query: 161 DPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLL 210
D + Q L VD+LVATPGRLMD + R E + +V+DE DR+L
Sbjct: 112 DEQAQKQRLIDGVDVLVATPGRLMD-LYGQRAVYFEEIEMVVLDEADRML 160
>TIGR_CMR|VC_1407 [details] [associations]
symbol:VC_1407 "ATP-dependent RNA helicase RhlE"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008152
"metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GenomeReviews:AE003852_GR GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 OMA:FRNLCAI HSSP:P10081 EMBL:AE004219 PIR:D82203
RefSeq:NP_231050.1 ProteinModelPortal:Q9KS53 DNASU:2614039
GeneID:2614039 KEGG:vch:VC1407 PATRIC:20081876
ProtClustDB:CLSK874358 Uniprot:Q9KS53
Length = 397
Score = 112 (44.5 bits), Expect = 2.1e-09, Sum P(2) = 2.1e-09
Identities = 28/70 (40%), Positives = 42/70 (60%)
Query: 70 RDLCINSPTGSGKTLSYALPIVQTL---SNRAVRCLRALVVLPTRDLALQVKDVFAAIAP 126
RDL + TG+GKT S+ LPI++ L + + +RAL+++PTR+LA+QV +
Sbjct: 39 RDLIAAAQTGTGKTASFVLPILEKLRQGQTQRKKRVRALILVPTRELAMQVAEKVEQYGK 98
Query: 127 AVGLSVGLAV 136
GL LAV
Sbjct: 99 DTGLK-SLAV 107
Score = 98 (39.6 bits), Expect = 2.1e-09, Sum P(2) = 2.1e-09
Identities = 23/50 (46%), Positives = 30/50 (60%)
Query: 161 DPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLL 210
D + Q L VD+LVATPGRLMD + R E + +V+DE DR+L
Sbjct: 112 DEQAQKQRLIDGVDVLVATPGRLMD-LYGQRAVYFEEIEMVVLDEADRML 160
>GENEDB_PFALCIPARUM|PFD1070w [details] [associations]
symbol:PFD1070w "eukaryotic initiation factor,
putative" species:5833 "Plasmodium falciparum" [GO:0016281
"eukaryotic translation initiation factor 4F complex" evidence=ISS]
[GO:0003743 "translation initiation factor activity" evidence=ISS]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0006446 "regulation of translational initiation" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0006446 GO:GO:0016281
GO:GO:0003743 EMBL:AL844503 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 HOGENOM:HOG000268797
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 KO:K13025
OMA:EDWKFDT RefSeq:XP_001351530.1 ProteinModelPortal:Q8IFN9
SMR:Q8IFN9 EnsemblProtists:PFD1070w:mRNA GeneID:812458
KEGG:pfa:PFD1070w EuPathDB:PlasmoDB:PF3D7_0422700
ProtClustDB:CLSZ2436055 Uniprot:Q8IFN9
Length = 390
Score = 119 (46.9 bits), Expect = 2.2e-09, Sum P(3) = 2.2e-09
Identities = 28/92 (30%), Positives = 53/92 (57%)
Query: 57 AVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQ 116
A+ Q I P L RD+ + S +G+GKT +A+ + + NR + + +++ PTR+LA Q
Sbjct: 42 AIQQRGIKPILNGRDVILQSQSGTGKTCVFAVGALNCV-NRNLNETQVIILSPTRELAEQ 100
Query: 117 VKDVFAAIAPAVGLSVGLAVGQSSIADEISEL 148
+ V A+A + +++ +G ++D+I L
Sbjct: 101 TQKVCLALADYIHVTIYCCIGGKKMSDDIKAL 132
Score = 76 (31.8 bits), Expect = 2.2e-09, Sum P(3) = 2.2e-09
Identities = 15/52 (28%), Positives = 30/52 (57%)
Query: 164 DVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQ 215
D ++ L + V ++ TPGR+ +N R +++ LV+DE D +L + ++
Sbjct: 127 DDIKALNNGVHVISGTPGRIYHMLNL-RHLKCKYIKQLVIDEADEMLNKGFK 177
Score = 50 (22.7 bits), Expect = 2.2e-09, Sum P(3) = 2.2e-09
Identities = 21/94 (22%), Positives = 42/94 (44%)
Query: 255 VERGFKDKPY-------PRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERL 307
+ +GFK++ Y P ++ SATL Q+ ++ +H P+ + L
Sbjct: 172 LNKGFKEQVYDIYRFLSPNTQIILSSATLPQEVLEITNKFMHKPVKILVKRDELTLEGIK 231
Query: 308 ESYKLICESKLKPLYLVALLQSLGEEKCIVFTSS 341
+ + I + + K L L +SL + +VF ++
Sbjct: 232 QFFVSIEKEQWKYETLADLYESLTITQAVVFCNT 265
>UNIPROTKB|Q8IFN9 [details] [associations]
symbol:PFD1070w "Eukaryotic initiation factor, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0003743 "translation
initiation factor activity" evidence=ISS] [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0006446
"regulation of translational initiation" evidence=ISS] [GO:0016281
"eukaryotic translation initiation factor 4F complex" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0006446 GO:GO:0016281
GO:GO:0003743 EMBL:AL844503 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 HOGENOM:HOG000268797
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 KO:K13025
OMA:EDWKFDT RefSeq:XP_001351530.1 ProteinModelPortal:Q8IFN9
SMR:Q8IFN9 EnsemblProtists:PFD1070w:mRNA GeneID:812458
KEGG:pfa:PFD1070w EuPathDB:PlasmoDB:PF3D7_0422700
ProtClustDB:CLSZ2436055 Uniprot:Q8IFN9
Length = 390
Score = 119 (46.9 bits), Expect = 2.2e-09, Sum P(3) = 2.2e-09
Identities = 28/92 (30%), Positives = 53/92 (57%)
Query: 57 AVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQ 116
A+ Q I P L RD+ + S +G+GKT +A+ + + NR + + +++ PTR+LA Q
Sbjct: 42 AIQQRGIKPILNGRDVILQSQSGTGKTCVFAVGALNCV-NRNLNETQVIILSPTRELAEQ 100
Query: 117 VKDVFAAIAPAVGLSVGLAVGQSSIADEISEL 148
+ V A+A + +++ +G ++D+I L
Sbjct: 101 TQKVCLALADYIHVTIYCCIGGKKMSDDIKAL 132
Score = 76 (31.8 bits), Expect = 2.2e-09, Sum P(3) = 2.2e-09
Identities = 15/52 (28%), Positives = 30/52 (57%)
Query: 164 DVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQ 215
D ++ L + V ++ TPGR+ +N R +++ LV+DE D +L + ++
Sbjct: 127 DDIKALNNGVHVISGTPGRIYHMLNL-RHLKCKYIKQLVIDEADEMLNKGFK 177
Score = 50 (22.7 bits), Expect = 2.2e-09, Sum P(3) = 2.2e-09
Identities = 21/94 (22%), Positives = 42/94 (44%)
Query: 255 VERGFKDKPY-------PRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERL 307
+ +GFK++ Y P ++ SATL Q+ ++ +H P+ + L
Sbjct: 172 LNKGFKEQVYDIYRFLSPNTQIILSSATLPQEVLEITNKFMHKPVKILVKRDELTLEGIK 231
Query: 308 ESYKLICESKLKPLYLVALLQSLGEEKCIVFTSS 341
+ + I + + K L L +SL + +VF ++
Sbjct: 232 QFFVSIEKEQWKYETLADLYESLTITQAVVFCNT 265
>ZFIN|ZDB-GENE-040825-3 [details] [associations]
symbol:ddx56 "DEAD (Asp-Glu-Ala-Asp) box polypeptide
56" species:7955 "Danio rerio" [GO:0004386 "helicase activity"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
ZFIN:ZDB-GENE-040825-3 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 KO:K14810 OMA:TFLMSAT
GeneTree:ENSGT00550000074946 CTD:54606 HOVERGEN:HBG051334
EMBL:CR394525 EMBL:AY648812 IPI:IPI00491475 RefSeq:NP_001003876.1
UniGene:Dr.79779 STRING:Q6DRE7 Ensembl:ENSDART00000034555
GeneID:445399 KEGG:dre:445399 InParanoid:Q6DRE7 NextBio:20832104
Uniprot:Q6DRE7
Length = 557
Score = 108 (43.1 bits), Expect = 2.3e-09, Sum P(2) = 2.3e-09
Identities = 48/169 (28%), Positives = 76/169 (44%)
Query: 55 QVAVWQETIGPGLFE-RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDL 113
Q + QE P E +DL + TGSGKT +YA+P++Q + + + +R V +
Sbjct: 28 QPTLIQEKAIPLALEGKDLLARARTGSGKTAAYAVPLIQRVLT-SKQTVREQAVRAV--V 84
Query: 114 ALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAV 173
+ K++ + + +AD IS + L A + +L E
Sbjct: 85 LVPTKELGQQVQTMIRQLTAYCSRDVRVAD-ISG---KADLSA-----QKPILMEKP--- 132
Query: 174 DILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVL 222
DI+V+TP R+ HINA L LV+DE D L ++A L +L
Sbjct: 133 DIVVSTPSRIQAHINAQNLQLHSSLEMLVIDEADLLFSFGFEADLKNLL 181
Score = 106 (42.4 bits), Expect = 2.3e-09, Sum P(2) = 2.3e-09
Identities = 27/93 (29%), Positives = 51/93 (54%)
Query: 265 PRLVK-MVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYL 323
P++ + ++SATL D L +L LH+P+ L ++ +L+ + + CE + K L +
Sbjct: 185 PKIYQAFLMSATLNDDVQALKELVLHNPVTLKLQGSQLPDSSQLQQFSIKCEEEDKFLLI 244
Query: 324 VALLQ-SLGEEKCIVFTSSVESTHRLCTLLNHF 355
+L+ L + K ++F S V+ ++RL L F
Sbjct: 245 YTMLKLGLIQGKTLLFVSDVDRSYRLKLFLEQF 277
>POMBASE|SPCC1494.06c [details] [associations]
symbol:SPCC1494.06c "ATP-dependent RNA helicase Dbp9
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISO] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005730 "nucleolus" evidence=ISO;IDA] [GO:0005829 "cytosol"
evidence=IDA] [GO:0006364 "rRNA processing" evidence=ISO]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 PomBase:SPCC1494.06c
GO:GO:0005829 GO:GO:0005524 GO:GO:0005730 EMBL:CU329672
GenomeReviews:CU329672_GR GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 KO:K14810
HOGENOM:HOG000253015 OMA:TFLMSAT OrthoDB:EOG4DFSWQ PIR:T41007
RefSeq:NP_588531.1 ProteinModelPortal:O60080 SMR:O60080
STRING:O60080 EnsemblFungi:SPCC1494.06c.1 GeneID:2538776
KEGG:spo:SPCC1494.06c NextBio:20799959 Uniprot:O60080
Length = 595
Score = 167 (63.8 bits), Expect = 2.4e-09, P = 2.4e-09
Identities = 72/258 (27%), Positives = 121/258 (46%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
LDPRL+ A+ F +V ETI L +DL + TGSGKT +Y +PI++ L
Sbjct: 21 LDPRLQRAIHKCE----FEKPTSVQSETIPLALEGKDLVAQARTGSGKTAAYLIPILELL 76
Query: 95 -SNRAV----RCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELI 149
+ + R + AL+++PTR+LA QV +V + + ++A S+ +
Sbjct: 77 LKQKQIDENQRGIFALLLVPTRELAQQVYNVLEKLTAFCSKHIRFI----NVATNSSDTV 132
Query: 150 KRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRL 209
+RP +L +L DI++ATP R + H+ A+ L+ L +LV+DE D +
Sbjct: 133 QRP------------LLLDLP---DIVIATPSRCVVHV-ASGVLPLDKLKFLVIDEADLM 176
Query: 210 LREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYP-RLV 268
L Y + T+ + ++ F ++T + K + R KDK +L
Sbjct: 177 LSFGYNEDMKTLSRSLPRGTQS-FLMSATLSKNIASLQKLVCRNPFILAVKDKEASGKLT 235
Query: 269 KMVLSATLTQDPNKLAQL 286
+ V+ + QD LA +
Sbjct: 236 QYVVKCS-EQDKFLLAYI 252
>POMBASE|SPBC21H7.04 [details] [associations]
symbol:dbp7 "ATP-dependent RNA helicase Dbp7
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISO] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=ISO;IDA] [GO:0006364 "rRNA processing" evidence=ISO]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 PomBase:SPBC21H7.04
GO:GO:0005524 GO:GO:0005730 EMBL:CU329671 GenomeReviews:CU329671_GR
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959 KO:K14806
HOGENOM:HOG000268799 OrthoDB:EOG4W6S47 PIR:T39930
RefSeq:NP_595929.1 ProteinModelPortal:O60173 STRING:O60173
EnsemblFungi:SPBC21H7.04.1 GeneID:2540518 KEGG:spo:SPBC21H7.04
NextBio:20801645 Uniprot:O60173
Length = 709
Score = 168 (64.2 bits), Expect = 2.5e-09, P = 2.5e-09
Identities = 84/292 (28%), Positives = 128/292 (43%)
Query: 35 LDPRLKVALQN-MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQT 93
LD +L L N M IS+ +Q + ++D I + TGSGKTL+Y LPIVQ
Sbjct: 145 LDTQLADHLNNKMNISAPTAIQSCCLPALLNTD--DKDAFIEAQTGSGKTLAYLLPIVQ- 201
Query: 94 LSNRAVRCLRALVVLPTRDLALQVKDVFAAI-APAVGLSVGLA-VGQSSIADEISELIKR 151
R +R LP ++L + ++A I AP L + V + +S I
Sbjct: 202 ---RLIR-------LP-KNLHTRTSGIYAVIMAPTRELCQQIYNVANKLNNNPLSHWIVS 250
Query: 152 PKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLR 211
+ G E ++ V+IL+ TPGRL DH+ T + + ++V+DE DRL+
Sbjct: 251 CNVIGGEKKKSEKA--RIRKGVNILIGTPGRLADHLENTEALDVSQVRWVVLDEGDRLMD 308
Query: 212 EAYQAWLPTVLQLTRSDNENRFSDAS------TFLPSAFGSLK-TIRRCGVERGFKDKPY 264
++ L +L S + D S T L SA ++K T++R + KD Y
Sbjct: 309 MGFEETLTKILSYLESQSSIIKKDLSIPSRKVTMLCSA--TMKDTVKRLS-DSALKDALY 365
Query: 265 PRLVKMVLSAT---LTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLI 313
L ++ T +Q P +L Q + P L L + SYK I
Sbjct: 366 --LKSSIVEETNDGYSQAPEQLLQRYVVVPPKLRLVSLVALLRSHVRSYKKI 415
>TIGR_CMR|CPS_1418 [details] [associations]
symbol:CPS_1418 "ATP-dependent RNA helicase, DEAD box
family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 OMA:FRNLCAI
HOGENOM:HOG000268807 RefSeq:YP_268161.1 ProteinModelPortal:Q485V4
GeneID:3523021 KEGG:cps:CPS_1418 PATRIC:21466051
BioCyc:CPSY167879:GI48-1499-MONOMER Uniprot:Q485V4
Length = 401
Score = 164 (62.8 bits), Expect = 2.5e-09, P = 2.5e-09
Identities = 79/296 (26%), Positives = 136/296 (45%)
Query: 38 RLKVALQNMGISSL-FPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSN 96
+L + N I+ L + A+ Q+ I L +D+ + TG+GKT S+ LP+++ L++
Sbjct: 7 KLSTPILN-AIADLGYTKPTAIQQKAIPVVLAGKDIIAAAQTGTGKTASFVLPLLEQLNS 65
Query: 97 ---------RAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISE 147
RA R +RAL+++PTR+LA+QV+ + A + +S S+A
Sbjct: 66 QYKETGKKLRAKR-IRALILVPTRELAVQVEASISQYAKYLDIS--------SMA----- 111
Query: 148 LIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETD 207
+ G+ D ++ Q L VDILVATPGRL+D + R + L LV+DE D
Sbjct: 112 ------MYGGV--DAQEQKQRLIWGVDILVATPGRLLD-MTHQRVLHFDELDMLVLDEAD 162
Query: 208 RLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLK-TIRR-CGVERGFKDKPYP 265
R+L + + +++ +N A T G K TI + + G P
Sbjct: 163 RMLDMGFIDDINKIIERLPEHRQNLLFSA-TMSEEVRGLAKRTIHKPVEISIGADKASKP 221
Query: 266 RLVKMVLSATLTQDPNKLAQL----DLHHPL-FLTTGETRYKLPERLESYKLICES 316
++ + +++ L+ + + L F+ T KL +LE ++ ES
Sbjct: 222 KIEQWLVTVDKANKSALLSHIITTQNWQQALIFIETKHGAAKLVSQLEKRGIVAES 277
>TIGR_CMR|CPS_3401 [details] [associations]
symbol:CPS_3401 "ATP-dependent RNA helicase, DEAD box
family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 RefSeq:YP_270076.1 ProteinModelPortal:Q47YP4
STRING:Q47YP4 GeneID:3521057 KEGG:cps:CPS_3401 PATRIC:21469753
OMA:HLIKEHQ ProtClustDB:CLSK907013
BioCyc:CPSY167879:GI48-3430-MONOMER Uniprot:Q47YP4
Length = 432
Score = 164 (62.8 bits), Expect = 2.9e-09, P = 2.9e-09
Identities = 62/184 (33%), Positives = 90/184 (48%)
Query: 65 PGLFE-RDLCINSPTGSGKTLSYALPIVQTL--------SNRAVRCLRALVVLPTRDLAL 115
P +F RDL + TGSGKT ++ALP++Q L N + LV++PTR+LA
Sbjct: 40 PSVFAGRDLIAGANTGSGKTATFALPMLQKLREDISSGSKNSKGNFVTGLVLVPTRELAK 99
Query: 116 QVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDI 175
QV D S+ S A + IK + G+ + + + L+ VDI
Sbjct: 100 QVAD-----------SI------KSYAVHFNGEIKTLAVFGGVSVNIQ--MLALRGGVDI 140
Query: 176 LVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSD 235
LVATPGRL+D I++ L+ + LV+DE DR+L + L +L LT +
Sbjct: 141 LVATPGRLLDLISSN-AIKLDKVKTLVLDEADRMLSLGFTEELTALLALTPKKKQTLLFS 199
Query: 236 ASTF 239
A TF
Sbjct: 200 A-TF 202
>WB|WBGene00022148 [details] [associations]
symbol:Y71G12B.8 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0040010 "positive regulation of growth rate"
evidence=IMP] [GO:0040007 "growth" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0040007 GO:GO:0040010 GO:GO:0002119 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00550000074997 EMBL:FO080942 RefSeq:NP_490891.2
ProteinModelPortal:Q95XM9 SMR:Q95XM9 PaxDb:Q95XM9
EnsemblMetazoa:Y71G12B.8 GeneID:171743 KEGG:cel:CELE_Y71G12B.8
UCSC:Y71G12B.8 CTD:171743 WormBase:Y71G12B.8 InParanoid:Q95XM9
OMA:ETDREAM NextBio:872509 Uniprot:Q95XM9
Length = 739
Score = 146 (56.5 bits), Expect = 3.0e-09, Sum P(2) = 3.0e-09
Identities = 37/105 (35%), Positives = 56/105 (53%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
L ++ A G S P+Q Q I L +D+C + TG+GKT ++ LPI++ +
Sbjct: 155 LSRQILKACSGAGYSDPTPIQ----QACIPVALTGKDICACAATGTGKTAAFVLPILERM 210
Query: 95 SNR--AVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVG 137
R C R LV++PTR+LA+QV VF ++ + L V L G
Sbjct: 211 IYRPKGASCTRVLVLVPTRELAIQVFQVFRKLSTFIQLEVCLCAG 255
Score = 137 (53.3 bits), Expect = 3.0e-08, Sum P(2) = 3.0e-08
Identities = 35/107 (32%), Positives = 62/107 (57%)
Query: 134 LAVGQSSIADEISELIKRPKLEAGICYDPEDV-LQE--LQSAVDILVATPGRLMDHINAT 190
LA+ + ++S I+ LE +C D+ QE L+S D++VATPGRL+DH++ +
Sbjct: 231 LAIQVFQVFRKLSTFIQ---LEVCLCAGGLDLKAQEAALRSGPDVVVATPGRLIDHLHNS 287
Query: 191 RGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDAS 237
F L ++ LV+DE DR+L EA++ + +++L + + A+
Sbjct: 288 PSFNLSNIEVLVLDEADRMLEEAFRDQMNELIRLCAQNRQTLLFSAT 334
Score = 67 (28.6 bits), Expect = 3.0e-09, Sum P(2) = 3.0e-09
Identities = 27/108 (25%), Positives = 51/108 (47%)
Query: 270 MVLSATLTQDPNKLAQLDLHHP--LFLTTG-ETRYKLPERLESYKLICESKLKPLYLVAL 326
++ SAT+T++ ++LA + L P +F+ +T KL + + E+ + + + AL
Sbjct: 329 LLFSATMTEEIDELASMSLQKPVKIFINENTDTALKLRQEFIRIRAGRETDREAM-VAAL 387
Query: 327 LQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVR 374
+ + IVF + + R+ LL G L IK+ + Q R
Sbjct: 388 VTRTFQTNTIVFVRTKKDCQRMQILL---GLLGIKVGQMQSSLTQGQR 432
>UNIPROTKB|J9NSI3 [details] [associations]
symbol:DDX56 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
PROSITE:PS51192 GO:GO:0008026 GeneTree:ENSGT00550000074946
Ensembl:ENSCAFT00000050014 OMA:YGYEDDL Uniprot:J9NSI3
Length = 445
Score = 139 (54.0 bits), Expect = 3.2e-09, Sum P(2) = 3.2e-09
Identities = 33/94 (35%), Positives = 59/94 (62%)
Query: 265 PRLVK-MVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKL-KPLY 322
PR+ + ++SAT +D L +L LH+P+ L E++ P++L ++++CE++ K L
Sbjct: 88 PRIYQAFLMSATFNEDVQALKELVLHNPVTLKLQESQLPGPDQLRQFQVVCETEEDKFLL 147
Query: 323 LVALLQ-SLGEEKCIVFTSSVESTHRLCTLLNHF 355
L ALL+ SL KC++F +++E ++RL L F
Sbjct: 148 LYALLKLSLIRGKCLLFVNTLERSYRLRLFLEQF 181
Score = 68 (29.0 bits), Expect = 3.2e-09, Sum P(2) = 3.2e-09
Identities = 17/54 (31%), Positives = 27/54 (50%)
Query: 169 LQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVL 222
L DI+V TP R+++H+ + L LV+DE D L ++ L +L
Sbjct: 31 LMEKPDIVVGTPSRILNHLQQDSLVLRDSLELLVLDEADLLFSFGFEEELKGLL 84
>SGD|S000001732 [details] [associations]
symbol:DBP7 "Putative ATP-dependent RNA helicase of the
DEAD-box family" species:4932 "Saccharomyces cerevisiae"
[GO:0000463 "maturation of LSU-rRNA from tricistronic rRNA
transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IMP]
[GO:0005730 "nucleolus" evidence=IEA;IDA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006364 "rRNA processing" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0042254 "ribosome biogenesis"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 SGD:S000001732
GO:GO:0005524 GO:GO:0005730 EMBL:BK006944 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0000463
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
InterPro:IPR025313 Pfam:PF13959 KO:K14806 HOGENOM:HOG000268799
OMA:RAYATHI OrthoDB:EOG4W6S47 EMBL:Z28249 PIR:S38093
RefSeq:NP_012949.1 ProteinModelPortal:P36120 SMR:P36120
DIP:DIP-1833N IntAct:P36120 MINT:MINT-395227 STRING:P36120
PaxDb:P36120 PeptideAtlas:P36120 EnsemblFungi:YKR024C GeneID:853894
KEGG:sce:YKR024C CYGD:YKR024c GeneTree:ENSGT00550000075041
NextBio:975207 Genevestigator:P36120 GermOnline:YKR024C
Uniprot:P36120
Length = 742
Score = 152 (58.6 bits), Expect = 3.4e-09, Sum P(2) = 3.4e-09
Identities = 54/189 (28%), Positives = 86/189 (45%)
Query: 44 QNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLR 103
Q M I +Q + IG + D I++ TGSGKTLSY LPI+ T+ N R
Sbjct: 160 QKMRIKKPTSIQKQAIPQIIG-NAGKNDFFIHAQTGSGKTLSYLLPIISTILNMDTHVDR 218
Query: 104 -----ALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGI 158
ALV+ PTR+LA Q+ V + + V + I E R K E
Sbjct: 219 TSGAFALVIAPTRELASQIYHVCSTLVSCCHYLVPCLL----IGGE------RKKSEKA- 267
Query: 159 CYDPEDVLQELQSAVDILVATPGRLMDHINATRGFT---LEHLCYLVVDETDRLLREAYQ 215
L+ + ++ TPGR++DH+ T+ + L Y+V+DE D+L+ +
Sbjct: 268 ---------RLRKGCNFIIGTPGRVLDHLQNTKVIKEQLSQSLRYIVLDEGDKLMELGFD 318
Query: 216 AWLPTVLQL 224
+ ++++
Sbjct: 319 ETISEIIKI 327
Score = 60 (26.2 bits), Expect = 3.4e-09, Sum P(2) = 3.4e-09
Identities = 26/99 (26%), Positives = 47/99 (47%)
Query: 259 FKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYK-----LPERLESYKLI 313
F P+ +LV M+ SATLT N+L + L ++ G + P++L I
Sbjct: 338 FPKLPH-KLVHMLCSATLTDGVNRLRNVALKDYKLISNGTKKDSDIVTVAPDQLLQRITI 396
Query: 314 CESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLL 352
KL+ + L A L ++ ++ F +S + + L T++
Sbjct: 397 VPPKLRLVTLAATLNNITKD----FIASGQQSKTLRTIV 431
>UNIPROTKB|Q8EGU0 [details] [associations]
symbol:SO_1501 "ATP-dependent RNA helicase DEAD box family"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 HOGENOM:HOG000268807
OMA:GGANMNP RefSeq:NP_717118.1 ProteinModelPortal:Q8EGU0
GeneID:1169311 KEGG:son:SO_1501 PATRIC:23522644
ProtClustDB:CLSK906294 Uniprot:Q8EGU0
Length = 456
Score = 119 (46.9 bits), Expect = 3.4e-09, Sum P(2) = 3.4e-09
Identities = 34/90 (37%), Positives = 50/90 (55%)
Query: 30 DHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALP 89
D L P L A+ G L VQ Q+ I L +D+ + TG+GKT ++ALP
Sbjct: 4 DTLGLSSPLLN-AITECGYQQLTQVQ----QQVIPLALVGKDIMACAQTGTGKTAAFALP 58
Query: 90 IVQTLSNRAVR--CLRALVVLPTRDLALQV 117
+++ L+ + LRALV+ PTR+LA+QV
Sbjct: 59 VLEQLAAKPADKPLLRALVMTPTRELAIQV 88
Score = 90 (36.7 bits), Expect = 3.4e-09, Sum P(2) = 3.4e-09
Identities = 21/42 (50%), Positives = 26/42 (61%)
Query: 169 LQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLL 210
++ VDILVATPGRL D I L + LV+DE DR+L
Sbjct: 119 VEQGVDILVATPGRLFDIIGQFN-LDLSSVTTLVIDEADRML 159
>TIGR_CMR|SO_1501 [details] [associations]
symbol:SO_1501 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 HOGENOM:HOG000268807
OMA:GGANMNP RefSeq:NP_717118.1 ProteinModelPortal:Q8EGU0
GeneID:1169311 KEGG:son:SO_1501 PATRIC:23522644
ProtClustDB:CLSK906294 Uniprot:Q8EGU0
Length = 456
Score = 119 (46.9 bits), Expect = 3.4e-09, Sum P(2) = 3.4e-09
Identities = 34/90 (37%), Positives = 50/90 (55%)
Query: 30 DHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALP 89
D L P L A+ G L VQ Q+ I L +D+ + TG+GKT ++ALP
Sbjct: 4 DTLGLSSPLLN-AITECGYQQLTQVQ----QQVIPLALVGKDIMACAQTGTGKTAAFALP 58
Query: 90 IVQTLSNRAVR--CLRALVVLPTRDLALQV 117
+++ L+ + LRALV+ PTR+LA+QV
Sbjct: 59 VLEQLAAKPADKPLLRALVMTPTRELAIQV 88
Score = 90 (36.7 bits), Expect = 3.4e-09, Sum P(2) = 3.4e-09
Identities = 21/42 (50%), Positives = 26/42 (61%)
Query: 169 LQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLL 210
++ VDILVATPGRL D I L + LV+DE DR+L
Sbjct: 119 VEQGVDILVATPGRLFDIIGQFN-LDLSSVTTLVIDEADRML 159
>SGD|S000001894 [details] [associations]
symbol:SPB4 "Putative ATP-dependent RNA helicase"
species:4932 "Saccharomyces cerevisiae" [GO:0000027 "ribosomal
large subunit assembly" evidence=IMP] [GO:0030686 "90S preribosome"
evidence=IDA;IPI] [GO:0042254 "ribosome biogenesis" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0006364 "rRNA
processing" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA;IDA] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=ISS] [GO:0000470 "maturation of LSU-rRNA" evidence=IMP]
[GO:0005654 "nucleoplasm" evidence=IDA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 SGD:S000001894
GO:GO:0005524 GO:GO:0005730 EMBL:D50617 EMBL:BK006940 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0030686
GO:GO:0006364 GO:GO:0004004 GO:GO:0000027 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
HOGENOM:HOG000268803 KO:K14809 GeneTree:ENSGT00550000074969
OMA:MDSSANI OrthoDB:EOG46MFT3 EMBL:X16147 PIR:S14942
RefSeq:NP_116654.1 ProteinModelPortal:P25808 SMR:P25808
DIP:DIP-5423N IntAct:P25808 MINT:MINT-525740 STRING:P25808
PaxDb:P25808 EnsemblFungi:YFL002C GeneID:850549 KEGG:sce:YFL002C
CYGD:YFL002c NextBio:966324 Genevestigator:P25808
GermOnline:YFL002C Uniprot:P25808
Length = 606
Score = 135 (52.6 bits), Expect = 3.7e-09, Sum P(3) = 3.7e-09
Identities = 51/196 (26%), Positives = 92/196 (46%)
Query: 37 PRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSN 96
P ++ L MG ++ PVQ + G +D+ ++S TGSGKT ++ +P+++ +
Sbjct: 16 PWIRTGLDVMGFETMTPVQASTIPMLAG----NKDVVVDSVTGSGKTAAFVIPVLEKVVK 71
Query: 97 RAVRCLR-------ALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELI 149
+ +L++ PTR+L+ Q++ V + L S + +L+
Sbjct: 72 EEANTSKFKKAHFHSLIIAPTRELSRQIESVVLSF---------LEHYPSDLFPIKCQLL 122
Query: 150 KRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVV-DETDR 208
EA + +DV L++ IL+ TPGR++D + T C +VV DE DR
Sbjct: 123 VGTN-EATV---RDDVSNFLRNRPQILIGTPGRVLDFLQMPAVKT--SACSMVVMDEADR 176
Query: 209 LLREAYQAWLPTVLQL 224
LL ++ +L+L
Sbjct: 177 LLDMSFIKDTEKILRL 192
Score = 69 (29.3 bits), Expect = 3.7e-09, Sum P(3) = 3.7e-09
Identities = 20/94 (21%), Positives = 44/94 (46%)
Query: 271 VLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSL 330
+ SAT+ + + + L +P+ +T ++ + P L+ + K LV++L +
Sbjct: 201 LFSATMRSAGSDIFKTGLRNPVRITVN-SKNQAPSSLKLNYCVVNPAEKLQLLVSILNNY 259
Query: 331 GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKE 364
+KCIV+ + S + + + G+ I + E
Sbjct: 260 KFKKCIVYFPTCVSVSYFYSFIQYLGKRNILVNE 293
Score = 45 (20.9 bits), Expect = 3.7e-09, Sum P(3) = 3.7e-09
Identities = 8/15 (53%), Positives = 12/15 (80%)
Query: 11 VLPWMRSPVDVSLFE 25
+LPW+R+ +DV FE
Sbjct: 14 LLPWIRTGLDVMGFE 28
>UNIPROTKB|G3MYF0 [details] [associations]
symbol:LOC100300937 "Uncharacterized protein" species:9913
"Bos taurus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR011545
Pfam:PF00013 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS50084 PROSITE:PS51194 SMART:SM00322 SMART:SM00490
GO:GO:0005524 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00660000095174 OMA:GLKSICI EMBL:DAAA02074437
Ensembl:ENSBTAT00000065115 Uniprot:G3MYF0
Length = 608
Score = 109 (43.4 bits), Expect = 3.8e-09, Sum P(3) = 3.8e-09
Identities = 24/72 (33%), Positives = 40/72 (55%)
Query: 166 LQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLT 225
+Q++ VDI++ATPGRL D + L + YLV+DE D++L ++ + +L
Sbjct: 318 IQDVTKGVDIIIATPGRLND-LQMNNFVNLRSITYLVLDEADKMLDLGFEHQIMKILLDV 376
Query: 226 RSDNENRFSDAS 237
R D + + AS
Sbjct: 377 RPDRQTVMTTAS 388
Score = 95 (38.5 bits), Expect = 3.8e-09, Sum P(3) = 3.8e-09
Identities = 31/87 (35%), Positives = 44/87 (50%)
Query: 37 PRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALP-IVQTLS 95
P + +++ G P+Q W I G+ DL + TG+GKTLSY +P + S
Sbjct: 210 PEIMQSIRRAGFQKPTPIQSQSWP-IILQGI---DLIGIAQTGTGKTLSYLMPGFIHIHS 265
Query: 96 NRAVRCLR----ALVVLPTRDLALQVK 118
R R LV+ PTR+LALQV+
Sbjct: 266 QPVSRKQRNGPGMLVLTPTRELALQVE 292
Score = 48 (22.0 bits), Expect = 3.8e-09, Sum P(3) = 3.8e-09
Identities = 17/72 (23%), Positives = 32/72 (44%)
Query: 270 MVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQS 329
++ +A+ +LAQ L P+ + G ++ ++ + K + LQS
Sbjct: 383 VMTTASWPDSTRRLAQSYLKQPMIVYVGTLDLVTVNTVKQNIIVTTEEEKRSLVKEFLQS 442
Query: 330 LG-EEKCIVFTS 340
L ++K IVF S
Sbjct: 443 LSPKDKVIVFVS 454
>CGD|CAL0003464 [details] [associations]
symbol:orf19.5991 species:5476 "Candida albicans" [GO:0005730
"nucleolus" evidence=IEA] [GO:0030687 "preribosome, large subunit
precursor" evidence=IEA] [GO:0000466 "maturation of 5.8S rRNA from
tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
evidence=IEA] [GO:0000463 "maturation of LSU-rRNA from tricistronic
rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012541 Pfam:PF00270 Pfam:PF00271 Pfam:PF08147
ProDom:PD024971 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
CGD:CAL0003464 GO:GO:0005524 GO:GO:0005730 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 EMBL:AACQ01000003
EMBL:AACQ01000004 GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 RefSeq:XP_723054.1
RefSeq:XP_723201.1 STRING:Q5ANB2 GeneID:3635229 GeneID:3635325
KEGG:cal:CaO19.13412 KEGG:cal:CaO19.5991 KO:K14808 Uniprot:Q5ANB2
Length = 908
Score = 128 (50.1 bits), Expect = 4.3e-09, Sum P(2) = 4.3e-09
Identities = 29/98 (29%), Positives = 58/98 (59%)
Query: 58 VWQETIGPGLFE-RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQ 116
+ ++TI P + E RD+ + TGSGKT ++ LP+++ L +R +RA+++ P+R+LALQ
Sbjct: 125 IQRKTI-PLIMEGRDVVGMARTGSGKTAAFVLPLIERLKSRQPGGVRAVILSPSRELALQ 183
Query: 117 VKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKL 154
+ L + +G S+ ++ S+++ +P +
Sbjct: 184 TYKQVKEFSHGTNLQSIVLIGGDSLEEDFSKMMTKPDI 221
Score = 87 (35.7 bits), Expect = 4.3e-09, Sum P(2) = 4.3e-09
Identities = 21/75 (28%), Positives = 37/75 (49%)
Query: 163 EDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVL 222
E+ ++ + DI+V TPGR + H+ + L + Y+V DE DRL + L +L
Sbjct: 209 EEDFSKMMTKPDIIVCTPGRFL-HLKVEMQYDLMTVQYIVFDEADRLFEMGFAEQLNELL 267
Query: 223 QLTRSDNENRFSDAS 237
S+ ++ A+
Sbjct: 268 ASLPSNRQSLLFSAT 282
>CGD|CAL0005460 [details] [associations]
symbol:DBP3 species:5476 "Candida albicans" [GO:0005730
"nucleolus" evidence=IEA] [GO:0030687 "preribosome, large subunit
precursor" evidence=IEA] [GO:0000464 "endonucleolytic cleavage in
ITS1 upstream of 5.8S rRNA from tricistronic rRNA transcript
(SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA] [GO:0008186
"RNA-dependent ATPase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 CGD:CAL0005460
GO:GO:0005524 GO:GO:0005730 GO:GO:0003723 EMBL:AACQ01000001
EMBL:AACQ01000002 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 RefSeq:XP_723365.1 RefSeq:XP_723554.1
ProteinModelPortal:Q5APT8 STRING:Q5APT8 GeneID:3634868
GeneID:3635070 KEGG:cal:CaO19.12334 KEGG:cal:CaO19.4870 KO:K14811
Uniprot:Q5APT8
Length = 564
Score = 111 (44.1 bits), Expect = 4.5e-09, Sum P(2) = 4.5e-09
Identities = 25/70 (35%), Positives = 48/70 (68%)
Query: 163 EDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVL 222
+D ++++++A +++VATPGRL+D IN L + YLV+DE DR+L + ++ + T++
Sbjct: 264 DDQIRKIKTA-NVVVATPGRLVDLIN-DGAINLGKVNYLVLDEADRMLEKGFEEDIKTII 321
Query: 223 QLTRSDNENR 232
T S++E +
Sbjct: 322 SNT-SNSERQ 330
Score = 100 (40.3 bits), Expect = 4.5e-09, Sum P(2) = 4.5e-09
Identities = 28/98 (28%), Positives = 47/98 (47%)
Query: 53 PVQVAVWQETIGPGLFE-RDLCINSPTGSGKTLSYALPIVQTLSNRA-VRCLRALVVLPT 110
P+Q W P L +D+ + TGSGKT ++ +P + + + L L + PT
Sbjct: 178 PIQSVSW-----PFLLSGKDVIGVAETGSGKTFAFGVPAINNIITTGNTKTLSVLCISPT 232
Query: 111 RDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISEL 148
R+LALQ+ D + G++ G S D+I ++
Sbjct: 233 RELALQIYDNLIELTADSGVNCVAVYGGVSKDDQIRKI 270
>ZFIN|ZDB-GENE-030131-3973 [details] [associations]
symbol:ddx31 "DEAD (Asp-Glu-Ala-Asp) box
polypeptide 31" species:7955 "Danio rerio" [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 ZFIN:ZDB-GENE-030131-3973 GO:GO:0005524 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
KO:K14806 HOGENOM:HOG000268799 GeneTree:ENSGT00550000075041
CTD:64794 HOVERGEN:HBG103793 OrthoDB:EOG42V8FK EMBL:BX276128
IPI:IPI00614096 RefSeq:XP_683832.1 UniGene:Dr.79241
Ensembl:ENSDART00000148314 GeneID:325248 KEGG:dre:325248
InParanoid:A2BFD2 NextBio:20809193 Uniprot:A2BFD2
Length = 739
Score = 138 (53.6 bits), Expect = 4.6e-09, Sum P(3) = 4.6e-09
Identities = 51/181 (28%), Positives = 87/181 (48%)
Query: 57 AVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQ 116
+V ++TI + +D + S TGSGKTL+Y +P+VQ L + R+ D L
Sbjct: 180 SVQKQTIPVLMSGKDAVVRSQTGSGKTLAYGIPMVQFLQAIQPKVKRS-------DGPLA 232
Query: 117 VKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPK--LEAGICYDPEDVLQE---LQS 171
V I P L++ QS ++ + + RP + G+ E E L+
Sbjct: 233 V-----VIVPTRELAL-----QSF---QMFQKLLRPFTWIVPGVLMGGEKKKAEKARLRK 279
Query: 172 AVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNEN 231
+++L++TPGRL+DHI T + +L++DE DR+L ++ L +L + +
Sbjct: 280 GINVLISTPGRLVDHIKNTLSIAFSAVRWLILDEADRILDLGFEKDLTVILNALNAAGPD 339
Query: 232 R 232
R
Sbjct: 340 R 340
Score = 65 (27.9 bits), Expect = 4.6e-09, Sum P(3) = 4.6e-09
Identities = 18/55 (32%), Positives = 30/55 (54%)
Query: 301 YKLPERLESYKLICESKLKPLYLVALLQSLGE----EKCIVFTSSVESTHRLCTL 351
Y +PERL+ + ++ SKL + L A + + + +K I+F SS E+ L L
Sbjct: 392 YAVPERLQQHVVVVPSKLHLVCLAAFILAKCKFEQRQKLIIFISSCEAVEFLLNL 446
Score = 48 (22.0 bits), Expect = 4.6e-09, Sum P(3) = 4.6e-09
Identities = 10/34 (29%), Positives = 20/34 (58%)
Query: 265 PRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGE 298
P ++LSAT+T+ ++LA + + P+ + E
Sbjct: 338 PDRQNVLLSATITEGLSRLASISMKDPVSVHVSE 371
>WB|WBGene00018890 [details] [associations]
symbol:F55F8.2 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0040010 "positive regulation of growth rate"
evidence=IMP] [GO:0000003 "reproduction" evidence=IMP] [GO:0040007
"growth" evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] [GO:0040002 "collagen and cuticulin-based cuticle
development" evidence=IMP] [GO:0006898 "receptor-mediated
endocytosis" evidence=IMP] [GO:0040035 "hermaphrodite genitalia
development" evidence=IMP] [GO:0007276 "gamete generation"
evidence=IMP] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0006898 GO:GO:0040007 GO:GO:0040010 GO:GO:0002119
GO:GO:0003676 GO:GO:0040035 GO:GO:0040002 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0007276 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081
KO:K14805 HOGENOM:HOG000290702 GeneTree:ENSGT00550000074847
OMA:VEEGYFA EMBL:FO081477 PIR:T29584 RefSeq:NP_491652.1
ProteinModelPortal:P91340 SMR:P91340 STRING:P91340 PaxDb:P91340
PRIDE:P91340 EnsemblMetazoa:F55F8.2a GeneID:172223
KEGG:cel:CELE_F55F8.2 UCSC:F55F8.2a CTD:172223 WormBase:F55F8.2a
InParanoid:P91340 NextBio:874573 ArrayExpress:P91340 Uniprot:P91340
Length = 746
Score = 165 (63.1 bits), Expect = 5.7e-09, P = 5.7e-09
Identities = 85/326 (26%), Positives = 148/326 (45%)
Query: 42 ALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIV---------- 91
A++ MG S +Q AV + +D+ + TGSGKTL++ +P+V
Sbjct: 169 AIEQMGFSEPTEIQSAVLPAAVRD---RQDVLGAAETGSGKTLAFGIPLVARLLESSDDS 225
Query: 92 QTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKR 151
Q + VR RAL+V PTR+L +Q+ A+ L +A +SI +++ +K+
Sbjct: 226 QETESTEVRGPRALIVAPTRELVIQIMKHINALISTTQL---IA---TSIVGGLAQ-VKQ 278
Query: 152 PKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHIN-ATRG-FTLE--HLCYLVVDETD 207
++ + Q DI+VATPGRL + A G F E L LVVDETD
Sbjct: 279 ERIIS-------------QQRPDIVVATPGRLWAMMQEAETGEFLAEWKDLKCLVVDETD 325
Query: 208 RLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPS-AFGSLKTIRRCGVERGFKDKPYPR 266
R++ E Y A L +L ++E F + F + + ++ + +
Sbjct: 326 RMVEEGYFAELTHILNKIHEESEKEKLQTLVFSATLTFAKAQDVAEEEKKKAKELSSQQK 385
Query: 267 LVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVAL 326
+ +++ L ++ +K+ +DL + G + R+ L+ E +YL L
Sbjct: 386 IQRLIKLTGLRENKHKV--IDLTRQM----GTAGCLVEARINCGNLL-EKDTSLVYL--L 436
Query: 327 LQSLGEEKCIVFTSSVESTHRLCTLL 352
+ G + IVF +S+++ RL ++L
Sbjct: 437 TRYPG--RTIVFVNSIDAARRLYSVL 460
>DICTYBASE|DDB_G0269192 [details] [associations]
symbol:tifA "eukaryotic translation initiation factor
4A" species:44689 "Dictyostelium discoideum" [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0006413
"translational initiation" evidence=IEA] [GO:0006412 "translation"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0003743
"translation initiation factor activity" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0044351 "macropinocytosis" evidence=RCA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 dictyBase:DDB_G0269192 GO:GO:0005524 GO:GO:0005737
EMBL:AAFI02000005 GenomeReviews:CM000150_GR GO:GO:0003743
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081
KO:K13025 OMA:LALGDFM RefSeq:XP_646270.1 ProteinModelPortal:Q55D61
SMR:Q55D61 PRIDE:Q55D61 EnsemblProtists:DDB0191511 GeneID:8617226
KEGG:ddi:DDB_G0269192 Uniprot:Q55D61
Length = 405
Score = 121 (47.7 bits), Expect = 6.1e-09, Sum P(3) = 6.1e-09
Identities = 27/92 (29%), Positives = 54/92 (58%)
Query: 57 AVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQ 116
A+ Q I P + RD + +G+GKT ++++ +Q + VR + L++ PTR+LA Q
Sbjct: 57 AIQQRAILPIIKGRDTIAQAQSGTGKTATFSIGALQCVEVN-VRSPQVLILSPTRELAQQ 115
Query: 117 VKDVFAAIAPAVGLSVGLAVGQSSIADEISEL 148
++ V A++ + + V VG +++D++ +L
Sbjct: 116 IQKVALALSEFMNIQVHACVGGKNLSDDVKKL 147
Score = 82 (33.9 bits), Expect = 6.1e-09, Sum P(3) = 6.1e-09
Identities = 16/52 (30%), Positives = 31/52 (59%)
Query: 164 DVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQ 215
D +++L++ V I+ TPGR++D I + H+ +++DE D +L +Q
Sbjct: 142 DDVKKLETGVHIVSGTPGRVLDMITR-KSLPTRHIKMMILDEADEMLSLGFQ 192
Score = 38 (18.4 bits), Expect = 6.1e-09, Sum P(3) = 6.1e-09
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 265 PRLVKMVL-SATLTQDPNKLAQLDLHHPL 292
P ++VL SATLTQD + + + P+
Sbjct: 203 PNGTQIVLVSATLTQDVVSMTEKFMTKPV 231
>UNIPROTKB|E2QTL6 [details] [associations]
symbol:DDX21 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0043330 "response to exogenous dsRNA"
evidence=IEA] [GO:0009615 "response to virus" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0003725 "double-stranded
RNA binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012562
Pfam:PF00270 Pfam:PF00271 Pfam:PF08152 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005730 GO:GO:0009615
GO:GO:0003725 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 GO:GO:0043330 InterPro:IPR014014 PROSITE:PS51195
CTD:9188 RefSeq:XP_851746.2 ProteinModelPortal:E2QTL6
Ensembl:ENSCAFT00000021901 GeneID:476891 KEGG:cfa:476891
NextBio:20852481 Uniprot:E2QTL6
Length = 785
Score = 114 (45.2 bits), Expect = 6.2e-09, Sum P(2) = 6.2e-09
Identities = 36/123 (29%), Positives = 61/123 (49%)
Query: 31 HLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPI 90
+ P + +K+ L+ G++ LFP+Q + G +DL + TG+GKT S+A+P+
Sbjct: 192 NFPISEETIKL-LKARGVTFLFPIQAKTFYHVYS-G---KDLIAQARTGTGKTFSFAIPL 246
Query: 91 VQTLSN-----RAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEI 145
+ L + R + LV+ PTR+LA QV F+ I L+V G + +I
Sbjct: 247 IVKLQGELQDRKRGRAPQVLVLAPTRELANQVSRDFSDITRK--LAVACFYGGTPYGGQI 304
Query: 146 SEL 148
+
Sbjct: 305 ERM 307
Score = 99 (39.9 bits), Expect = 6.2e-09, Sum P(2) = 6.2e-09
Identities = 20/67 (29%), Positives = 41/67 (61%)
Query: 166 LQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLT 225
++ +++ +DILV TPGR+ DH+ + L L ++V+DE D++L + + +L +
Sbjct: 304 IERMRNGIDILVGTPGRIKDHLQNGK-LDLTKLKHVVLDEVDQMLDMGFADQVEEILSVA 362
Query: 226 -RSDNEN 231
+ D+E+
Sbjct: 363 YKKDSED 369
>UNIPROTKB|F6V8G4 [details] [associations]
symbol:DDX21 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012562 Pfam:PF00270 Pfam:PF00271 Pfam:PF08152
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00680000100003 OMA:QCEPPRE EMBL:AAEX03002786
Ensembl:ENSCAFT00000021901 Uniprot:F6V8G4
Length = 786
Score = 114 (45.2 bits), Expect = 6.2e-09, Sum P(2) = 6.2e-09
Identities = 36/123 (29%), Positives = 61/123 (49%)
Query: 31 HLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPI 90
+ P + +K+ L+ G++ LFP+Q + G +DL + TG+GKT S+A+P+
Sbjct: 192 NFPISEETIKL-LKARGVTFLFPIQAKTFYHVYS-G---KDLIAQARTGTGKTFSFAIPL 246
Query: 91 VQTLSN-----RAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEI 145
+ L + R + LV+ PTR+LA QV F+ I L+V G + +I
Sbjct: 247 IVKLQGELQDRKRGRAPQVLVLAPTRELANQVSRDFSDITRK--LAVACFYGGTPYGGQI 304
Query: 146 SEL 148
+
Sbjct: 305 ERM 307
Score = 99 (39.9 bits), Expect = 6.2e-09, Sum P(2) = 6.2e-09
Identities = 20/67 (29%), Positives = 41/67 (61%)
Query: 166 LQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLT 225
++ +++ +DILV TPGR+ DH+ + L L ++V+DE D++L + + +L +
Sbjct: 304 IERMRNGIDILVGTPGRIKDHLQNGK-LDLTKLKHVVLDEVDQMLDMGFADQVEEILSVA 362
Query: 226 -RSDNEN 231
+ D+E+
Sbjct: 363 YKKDSED 369
>SGD|S000002319 [details] [associations]
symbol:DHH1 "Cytoplasmic DExD/H-box helicase, stimulates mRNA
decapping" species:4932 "Saccharomyces cerevisiae" [GO:0000932
"cytoplasmic mRNA processing body" evidence=IEA;IDA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0006417 "regulation of
translation" evidence=IEA] [GO:0034063 "stress granule assembly"
evidence=IMP] [GO:0005737 "cytoplasm" evidence=IEA;IDA] [GO:0000290
"deadenylation-dependent decapping of nuclear-transcribed mRNA"
evidence=IMP] [GO:0003724 "RNA helicase activity" evidence=IGI;ISS]
[GO:0033962 "cytoplasmic mRNA processing body assembly"
evidence=IGI;IMP] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0010494 "cytoplasmic stress
granule" evidence=IDA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0006810 "transport"
evidence=IEA] [GO:0051028 "mRNA transport" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 SGD:S000002319 GO:GO:0005524
GO:GO:0006417 GO:GO:0006397 EMBL:BK006938 GO:GO:0003723
GO:GO:0000753 GO:GO:0000932 EMBL:Z67750 GO:GO:0051028
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0010494
GO:GO:0033962 GO:GO:0034063 GO:GO:0008026 eggNOG:COG0513
GeneTree:ENSGT00530000063986 HOGENOM:HOG000268797 KO:K12614
OMA:YSHARMK GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195
GO:GO:0000290 OrthoDB:EOG4QJVWF EMBL:X66057 EMBL:Z74208 PIR:S31229
RefSeq:NP_010121.1 PDB:1S2M PDBsum:1S2M ProteinModelPortal:P39517
SMR:P39517 DIP:DIP-1243N IntAct:P39517 MINT:MINT-385061
STRING:P39517 PaxDb:P39517 PeptideAtlas:P39517 EnsemblFungi:YDL160C
GeneID:851394 KEGG:sce:YDL160C CYGD:YDL160c
EvolutionaryTrace:P39517 NextBio:968552 Genevestigator:P39517
GermOnline:YDL160C Uniprot:P39517
Length = 506
Score = 127 (49.8 bits), Expect = 6.3e-09, Sum P(2) = 6.3e-09
Identities = 29/104 (27%), Positives = 56/104 (53%)
Query: 46 MGISSL-FPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRA 104
MGI F + +E I + RD+ + G+GKT ++ +P ++ + + + ++A
Sbjct: 59 MGIFEAGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLEKVKPKLNK-IQA 117
Query: 105 LVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISEL 148
L+++PTR+LALQ V + G+S + G +++ D+I L
Sbjct: 118 LIMVPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDILRL 161
Score = 80 (33.2 bits), Expect = 6.3e-09, Sum P(2) = 6.3e-09
Identities = 21/77 (27%), Positives = 40/77 (51%)
Query: 163 EDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVL 222
+D+L+ L V ILV TPGR++D + + + L ++DE D++L ++ + +L
Sbjct: 156 DDILR-LNETVHILVGTPGRVLD-LASRKVADLSDCSLFIMDEADKMLSRDFKTIIEQIL 213
Query: 223 QLTRSDNENRFSDASTF 239
+++ A TF
Sbjct: 214 SFLPPTHQSLLFSA-TF 229
>WB|WBGene00015232 [details] [associations]
symbol:B0511.6 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0040007 "growth"
evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] [GO:0008340 "determination of adult lifespan"
evidence=IMP] [GO:0043652 "engulfment of apoptotic cell"
evidence=IMP] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0008340
GO:GO:0040007 GO:GO:0002119 GO:GO:0003723 GO:GO:0043652
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
InterPro:IPR025313 Pfam:PF13959 HOGENOM:HOG000268799 KO:K13179
OMA:KDGYRSY GeneTree:ENSGT00680000100037 HSSP:P10081 EMBL:FO080219
PIR:T33113 RefSeq:NP_492779.1 ProteinModelPortal:O61815 SMR:O61815
DIP:DIP-27278N MINT:MINT-1068292 STRING:O61815 PaxDb:O61815
EnsemblMetazoa:B0511.6.1 EnsemblMetazoa:B0511.6.2 GeneID:172954
KEGG:cel:CELE_B0511.6 UCSC:B0511.6.1 CTD:172954 WormBase:B0511.6
InParanoid:O61815 NextBio:877669 Uniprot:O61815
Length = 544
Score = 137 (53.3 bits), Expect = 6.3e-09, Sum P(2) = 6.3e-09
Identities = 40/146 (27%), Positives = 76/146 (52%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
++ L A+Q +G +++ +Q ++I P L +D+ ++ TGSGKTL++ LP ++ L
Sbjct: 75 VNANLLKAVQGLGFTTMTEIQA----KSIDPLLEGKDVLASAKTGSGKTLAFLLPAIELL 130
Query: 95 SN---RAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKR 151
+ ++V PTR+L++Q V + + L+ GL +G S+ + E +L K
Sbjct: 131 HKLNWKQHNGTGVIIVSPTRELSMQTYGVLSELLEGSNLTYGLVMGGSNRSAEKDKLAKG 190
Query: 152 PKLEAGICYDPEDVLQELQSAVDILV 177
+ + P +L LQ+ + LV
Sbjct: 191 VSI---LVATPGRLLDHLQNTDNFLV 213
Score = 122 (48.0 bits), Expect = 3.0e-07, Sum P(2) = 3.0e-07
Identities = 29/82 (35%), Positives = 46/82 (56%)
Query: 145 ISELIKRPKLEAGICYDPEDVLQE---LQSAVDILVATPGRLMDHINATRGFTLEHLCYL 201
+SEL++ L G+ + E L V ILVATPGRL+DH+ T F + ++ L
Sbjct: 160 LSELLEGSNLTYGLVMGGSNRSAEKDKLAKGVSILVATPGRLLDHLQNTDNFLVRNMKCL 219
Query: 202 VVDETDRLLREAYQAWLPTVLQ 223
++DE DR+L ++ + VL+
Sbjct: 220 IIDEADRILDIGFEIEMQQVLR 241
Score = 70 (29.7 bits), Expect = 6.3e-09, Sum P(2) = 6.3e-09
Identities = 30/107 (28%), Positives = 50/107 (46%)
Query: 270 MVLSATLTQDPNKLAQLDLH-HPLFLTTGETRYKLP-ERLESYKLICESKLKPLYLVALL 327
M+ SAT + ++L +L LH +P+ ++ E + E L+ ++ S + L L L
Sbjct: 250 MLFSATHSPKVDELVKLALHSNPVRVSVHEKAEEATVEGLQQGYIVAPSDKRLLLLFTFL 309
Query: 328 QSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVR 374
+ +K +VF SS S LLN+ + I G Q+Q R
Sbjct: 310 KKNKTKKVMVFFSSCNSVKFHHELLNY---IDIPCMSIHGKQKQQKR 353
>WB|WBGene00002083 [details] [associations]
symbol:inf-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] [GO:0040007 "growth" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] [GO:0040011
"locomotion" evidence=IMP] [GO:0008340 "determination of adult
lifespan" evidence=IMP] [GO:0019915 "lipid storage" evidence=IMP]
[GO:0040010 "positive regulation of growth rate" evidence=IMP]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0008340 GO:GO:0009792
GO:GO:0040007 GO:GO:0040010 GO:GO:0002119 GO:GO:0040011
GO:GO:0000003 GO:GO:0019915 GO:GO:0003743 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:FO081266 GO:GO:0008026
eggNOG:COG0513 HOGENOM:HOG000268797 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00530000062880 KO:K03257 OMA:TENDARQ
EMBL:Z12116 PIR:S26281 RefSeq:NP_001022623.1 RefSeq:NP_001022624.1
UniGene:Cel.6803 ProteinModelPortal:P27639 SMR:P27639
DIP:DIP-27102N IntAct:P27639 MINT:MINT-1112147 STRING:P27639
PaxDb:P27639 PRIDE:P27639 EnsemblMetazoa:F57B9.6a.1
EnsemblMetazoa:F57B9.6a.2 GeneID:175966 KEGG:cel:CELE_F57B9.6
UCSC:F57B9.6a.1 CTD:175966 WormBase:F57B9.6a WormBase:F57B9.6b
InParanoid:P27639 NextBio:890522 Uniprot:P27639
Length = 402
Score = 126 (49.4 bits), Expect = 6.4e-09, Sum P(3) = 6.4e-09
Identities = 38/124 (30%), Positives = 69/124 (55%)
Query: 36 DPRLKVALQNMGISSL-FPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
D LK L GI F A+ + I P +D+ + +G+GKT ++++ I+Q +
Sbjct: 33 DMELKEELLR-GIYGFGFEKPSAIQKRAIVPCTTGKDVIAQAQSGTGKTATFSVSILQRI 91
Query: 95 SNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKL 154
+ ++ALV+ PTR+LA Q++ V +A+ + +++ +G +S+ D+ +R KL
Sbjct: 92 DHEDPH-VQALVMAPTRELAQQIQKVMSALGEYLNVNILPCIGGTSVRDD-----QR-KL 144
Query: 155 EAGI 158
EAGI
Sbjct: 145 EAGI 148
Score = 72 (30.4 bits), Expect = 6.4e-09, Sum P(3) = 6.4e-09
Identities = 15/52 (28%), Positives = 28/52 (53%)
Query: 164 DVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQ 215
D ++L++ + ++V TPGR+ D IN + V+DE D +L ++
Sbjct: 139 DDQRKLEAGIHVVVGTPGRVGDMINRN-ALDTSRIKMFVLDEADEMLSRGFK 189
Score = 42 (19.8 bits), Expect = 6.4e-09, Sum P(3) = 6.4e-09
Identities = 14/45 (31%), Positives = 25/45 (55%)
Query: 255 VERGFKDKPY------PRLVKMVL-SATLTQDPNKLAQLDLHHPL 292
+ RGFKD+ Y P+ V++VL SAT+ + + + +P+
Sbjct: 184 LSRGFKDQIYEVFRSMPQDVQVVLLSATMPSEVLDVTNRFMRNPI 228
>ZFIN|ZDB-GENE-040426-2802 [details] [associations]
symbol:eif4a2 "eukaryotic translation initiation
factor 4A, isoform 2" species:7955 "Danio rerio" [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003743 "translation
initiation factor activity" evidence=IEA] [GO:0006413
"translational initiation" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
ZFIN:ZDB-GENE-040426-2802 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00530000062880
EMBL:CT027646 EMBL:CU929049 IPI:IPI00507769
ProteinModelPortal:F1R166 Ensembl:ENSDART00000130781
ArrayExpress:F1R166 Bgee:F1R166 Uniprot:F1R166
Length = 411
Score = 129 (50.5 bits), Expect = 6.4e-09, Sum P(2) = 6.4e-09
Identities = 38/124 (30%), Positives = 65/124 (52%)
Query: 36 DPRLKVALQNMGISSL-FPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
D LK L GI + F A+ Q I P + D+ + +G+GKT ++A+ I+Q L
Sbjct: 41 DMNLKETLLR-GIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQL 99
Query: 95 SNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISEL-IKRPK 153
+ALV+ PTR+LA Q++ V A+ +G S +G +++ +E+ +L + P
Sbjct: 100 EIEQKET-QALVLAPTRELAQQIQKVILALGDYMGASCHACIGGTNVRNEMQKLQAEAPH 158
Query: 154 LEAG 157
+ G
Sbjct: 159 IVVG 162
Score = 75 (31.5 bits), Expect = 6.4e-09, Sum P(2) = 6.4e-09
Identities = 19/59 (32%), Positives = 34/59 (57%)
Query: 166 LQELQS-AVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQ 223
+Q+LQ+ A I+V TPGR+ D +N R + + + V+DE D +L ++ + + Q
Sbjct: 149 MQKLQAEAPHIVVGTPGRVFDMLNR-RYLSPKWIKMFVLDEADEMLSRGFKDQIYEIFQ 206
Score = 43 (20.2 bits), Expect = 1.2e-05, Sum P(2) = 1.2e-05
Identities = 20/94 (21%), Positives = 41/94 (43%)
Query: 255 VERGFKDKPYPRLVKM-------VLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERL 307
+ RGFKD+ Y K+ +LSAT+ D ++ + P+ + + L
Sbjct: 193 LSRGFKDQIYEIFQKLSTNIQVVLLSATMPADVLEVTTKFMREPVRILVKKEELTLEGIK 252
Query: 308 ESYKLICESKLKPLYLVALLQSLGEEKCIVFTSS 341
+ Y + + K L L ++L + ++F ++
Sbjct: 253 QFYINVEREEWKLDTLCDLYETLTITQAVIFLNT 286
>ZFIN|ZDB-GENE-031030-2 [details] [associations]
symbol:eif4a1a "eukaryotic translation initiation
factor 4A, isoform 1A" species:7955 "Danio rerio" [GO:0004386
"helicase activity" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0003743 "translation
initiation factor activity" evidence=IEA] [GO:0006413
"translational initiation" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 ZFIN:ZDB-GENE-031030-2 GO:GO:0005524 GO:GO:0003743
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
HOGENOM:HOG000268797 InterPro:IPR014014 PROSITE:PS51195
HOVERGEN:HBG107989 HSSP:P10081 GeneTree:ENSGT00530000062880
KO:K03257 OMA:IKMFILD OrthoDB:EOG4640C1 EMBL:CR848032 EMBL:BC048899
IPI:IPI00502344 RefSeq:NP_938180.1 UniGene:Dr.75120 SMR:Q802C9
STRING:Q802C9 Ensembl:ENSDART00000058913 GeneID:386634
KEGG:dre:386634 CTD:386634 InParanoid:Q802C9 NextBio:20813962
Uniprot:Q802C9
Length = 406
Score = 125 (49.1 bits), Expect = 6.7e-09, Sum P(2) = 6.7e-09
Identities = 32/114 (28%), Positives = 64/114 (56%)
Query: 36 DPRLKVALQNMGISSL-FPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
D L+ AL GI + F A+ Q I P + D+ + +G+GKT ++A+ I+Q +
Sbjct: 36 DMNLREALLR-GIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQI 94
Query: 95 SNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISEL 148
++ +A+V+ PTR+LA Q++ V A+ +G + +G +++ +++ +L
Sbjct: 95 DVE-LKATQAMVLAPTRELAQQIQKVVLALGDYMGATCHACIGGTNVRNDVQKL 147
Score = 79 (32.9 bits), Expect = 6.7e-09, Sum P(2) = 6.7e-09
Identities = 19/66 (28%), Positives = 37/66 (56%)
Query: 166 LQELQSAVD-ILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQL 224
+Q+LQ+ V I+V TPGR+ D +N R + +++ +DE D +L ++ + + Q
Sbjct: 144 VQKLQADVPHIVVGTPGRVFDMLNR-RYLSPKYIKMFALDEADEMLSRGFKDQIYEIFQK 202
Query: 225 TRSDNE 230
+D +
Sbjct: 203 LATDTQ 208
Score = 45 (20.9 bits), Expect = 2.1e-05, Sum P(2) = 2.1e-05
Identities = 20/94 (21%), Positives = 43/94 (45%)
Query: 255 VERGFKDKPYPRLVKM-------VLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERL 307
+ RGFKD+ Y K+ +LSAT+ Q+ ++ + P+ + + L
Sbjct: 188 LSRGFKDQIYEIFQKLATDTQVILLSATMPQEVLEVTTKFMRDPVRILVKKEELTLEGIR 247
Query: 308 ESYKLICESKLKPLYLVALLQSLGEEKCIVFTSS 341
+ Y + + + K L L ++L + ++F ++
Sbjct: 248 QFYINVEKEEWKLDTLCDLYETLTITQAVIFINT 281
>UNIPROTKB|E7EQG2 [details] [associations]
symbol:EIF4A2 "Eukaryotic initiation factor 4A-II"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 EMBL:AC112907 HGNC:HGNC:3284 ChiTaRS:EIF4A2
IPI:IPI00924536 ProteinModelPortal:E7EQG2 SMR:E7EQG2 PRIDE:E7EQG2
Ensembl:ENST00000425053 ArrayExpress:E7EQG2 Bgee:E7EQG2
Uniprot:E7EQG2
Length = 362
Score = 127 (49.8 bits), Expect = 6.8e-09, Sum P(2) = 6.8e-09
Identities = 37/124 (29%), Positives = 67/124 (54%)
Query: 36 DPRLKVALQNMGISSL-FPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
D LK +L GI + F A+ Q I P + D+ + +G+GKT ++A+ I+Q L
Sbjct: 37 DMNLKESLLR-GIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQL 95
Query: 95 SNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISEL-IKRPK 153
+ +ALV+ PTR+LA Q++ V A+ +G + +G +++ +E+ +L + P
Sbjct: 96 EIE-FKETQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRNEMQKLQAEAPH 154
Query: 154 LEAG 157
+ G
Sbjct: 155 IVVG 158
Score = 75 (31.5 bits), Expect = 6.8e-09, Sum P(2) = 6.8e-09
Identities = 19/59 (32%), Positives = 34/59 (57%)
Query: 166 LQELQS-AVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQ 223
+Q+LQ+ A I+V TPGR+ D +N R + + + V+DE D +L ++ + + Q
Sbjct: 145 MQKLQAEAPHIVVGTPGRVFDMLNR-RYLSPKWIKMFVLDEADEMLSRGFKDQIYEIFQ 202
Score = 45 (20.9 bits), Expect = 8.2e-06, Sum P(2) = 8.2e-06
Identities = 20/94 (21%), Positives = 42/94 (44%)
Query: 255 VERGFKDKPYPRLVKM-------VLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERL 307
+ RGFKD+ Y K+ +LSAT+ D ++ + + P+ + + L
Sbjct: 189 LSRGFKDQIYEIFQKLNTSIQVVLLSATMPTDVLEVTKKFMRDPIRILVKKEELTLEGIK 248
Query: 308 ESYKLICESKLKPLYLVALLQSLGEEKCIVFTSS 341
+ Y + + K L L ++L + ++F ++
Sbjct: 249 QFYINVEREEWKLDTLCDLYETLTITQAVIFLNT 282
WARNING: HSPs involving 390 database sequences were not reported due to the
limiting value of parameter B = 250.
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.321 0.137 0.403 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 375 375 0.00088 117 3 11 22 0.37 34
34 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 640
No. of states in DFA: 613 (65 KB)
Total size of DFA: 232 KB (2127 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 31.14u 0.09s 31.23t Elapsed: 00:00:02
Total cpu time: 31.19u 0.09s 31.28t Elapsed: 00:00:02
Start: Tue May 21 04:57:43 2013 End: Tue May 21 04:57:45 2013
WARNINGS ISSUED: 2