BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 017196
(375 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3BER|A Chain A, Human Dead-Box Rna-Helicase Ddx47, Conserved Domain I In
Complex With Amp
Length = 249
Score = 95.5 bits (236), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 65/191 (34%), Positives = 98/191 (51%), Gaps = 31/191 (16%)
Query: 53 PVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRD 112
P ++ + E I L RD+ + TGSGKT ++ALPI+ L R L ALV+ PTR+
Sbjct: 66 PTKIQI--EAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETPQR-LFALVLTPTRE 122
Query: 113 LALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSA 172
LA Q+ + F A+ ++G+ + VG + L K+P
Sbjct: 123 LAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPH------------------- 163
Query: 173 VDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENR 232
I++ATPGRL+DH+ T+GF L L YLV+DE DR+L ++ + +L++ D +
Sbjct: 164 --IIIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRK-- 219
Query: 233 FSDASTFLPSA 243
TFL SA
Sbjct: 220 -----TFLFSA 225
>pdb|3LY5|A Chain A, Ddx18 Dead-Domain
pdb|3LY5|B Chain B, Ddx18 Dead-Domain
Length = 262
Score = 86.3 bits (212), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 64/206 (31%), Positives = 104/206 (50%), Gaps = 31/206 (15%)
Query: 24 FEDCPLDHLPCL--DPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSG 81
FED L L + LK A++ MG +++ +Q ++I P L RDL + TGSG
Sbjct: 49 FEDTSFASLCNLVNENTLK-AIKEMGFTNMTEIQ----HKSIRPLLEGRDLLAAAKTGSG 103
Query: 82 KTLSYALPIVQTLSNRAV---RCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQ 138
KTL++ +P V+ + L++ PTR+LA+Q V + + GL +G
Sbjct: 104 KTLAFLIPAVELIVKLRFMPRNGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGG 163
Query: 139 SSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHL 198
S+ + E Q+L + ++I+VATPGRL+DH+ T GF ++L
Sbjct: 164 SNRSAEA---------------------QKLGNGINIIVATPGRLLDHMQNTPGFMYKNL 202
Query: 199 CYLVVDETDRLLREAYQAWLPTVLQL 224
LV+DE DR+L ++ L +++L
Sbjct: 203 QCLVIDEADRILDVGFEEELKQIIKL 228
>pdb|3I5X|A Chain A, Structure Of Mss116p Bound To Ssrna And Amp-Pnp
pdb|3I5Y|A Chain A, Structure Of Mss116p Bound To Ssrna Containing A Single
5-Bru And Amp- Pnp
pdb|3I61|A Chain A, Structure Of Mss116p Bound To Ssrna And Adp-beryllium
Fluoride
pdb|3I62|A Chain A, Structure Of Mss116p Bound To Ssrna And Adp-aluminum
Fluoride
Length = 563
Score = 80.5 bits (197), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 92/365 (25%), Positives = 152/365 (41%), Gaps = 85/365 (23%)
Query: 34 CLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLF--ERDLCINSPTGSGKTLSYALPIV 91
LD + A+ M L PVQ Q+TI P L + D+ + TG+GKT ++ +PI
Sbjct: 78 VLDKEIHKAITRMEFPGLTPVQ----QKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIF 133
Query: 92 QTLSNRAVRC---LRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLA-------VGQSSI 141
Q L N ++A++V PTRDLALQ++ A + ++ GL VG +
Sbjct: 134 QHLINTKFDSQYMVKAVIVAPTRDLALQIE---AEVKKIHDMNYGLKKYACVSLVGGTDF 190
Query: 142 ADEISELIK-RPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCY 200
++++ K RP +I++ATPGRL+D + + Y
Sbjct: 191 RAAMNKMNKLRP---------------------NIVIATPGRLIDVLEKYSNKFFRFVDY 229
Query: 201 LVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFK 260
V+DE DRLL ++ L T+ + N + T L
Sbjct: 230 KVLDEADRLLEIGFRDDLETISGILNEKNSKSADNIKTLL-------------------- 269
Query: 261 DKPYPRLVKMVLSATLTQDPNKLAQ--LDLHHPLFL-TTGETRYKLPERLESYKLICESK 317
SATL KLA ++ LFL T + + ER++ +I E
Sbjct: 270 -----------FSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQSVVISEKF 318
Query: 318 LKPLYLVALLQSLGEE--------KCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQ 369
++ A ++ + ++ K I+F +V+ T LC++L + + + I E+ G
Sbjct: 319 ANSIF--AAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKI 376
Query: 370 RQSVR 374
Q+ R
Sbjct: 377 TQNKR 381
>pdb|3SQX|A Chain A, Structure Of Mss116p (Nte And C-Tail Double Deletion)
Bound To Ssrna And Amp-Pnp
Length = 512
Score = 80.5 bits (197), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 92/365 (25%), Positives = 152/365 (41%), Gaps = 85/365 (23%)
Query: 34 CLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLF--ERDLCINSPTGSGKTLSYALPIV 91
LD + A+ M L PVQ Q+TI P L + D+ + TG+GKT ++ +PI
Sbjct: 27 VLDKEIHKAITRMEFPGLTPVQ----QKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIF 82
Query: 92 QTLSNRAVRC---LRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLA-------VGQSSI 141
Q L N ++A++V PTRDLALQ++ A + ++ GL VG +
Sbjct: 83 QHLINTKFDSQYMVKAVIVAPTRDLALQIE---AEVKKIHDMNYGLKKYACVSLVGGTDF 139
Query: 142 ADEISELIK-RPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCY 200
++++ K RP +I++ATPGRL+D + + Y
Sbjct: 140 RAAMNKMNKLRP---------------------NIVIATPGRLIDVLEKYSNKFFRFVDY 178
Query: 201 LVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFK 260
V+DE DRLL ++ L T+ + N + T L
Sbjct: 179 KVLDEADRLLEIGFRDDLETISGILNEKNSKSADNIKTLL-------------------- 218
Query: 261 DKPYPRLVKMVLSATLTQDPNKLAQ--LDLHHPLFL-TTGETRYKLPERLESYKLICESK 317
SATL KLA ++ LFL T + + ER++ +I E
Sbjct: 219 -----------FSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQSVVISEKF 267
Query: 318 LKPLYLVALLQSLGEE--------KCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQ 369
++ A ++ + ++ K I+F +V+ T LC++L + + + I E+ G
Sbjct: 268 ANSIF--AAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKI 325
Query: 370 RQSVR 374
Q+ R
Sbjct: 326 TQNKR 330
>pdb|3SQW|A Chain A, Structure Of Mss116p (Nte Deletion) Bound To Ssrna And
Amp-Pnp
Length = 579
Score = 79.7 bits (195), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 92/363 (25%), Positives = 150/363 (41%), Gaps = 81/363 (22%)
Query: 34 CLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLF--ERDLCINSPTGSGKTLSYALPIV 91
LD + A+ M L PVQ Q+TI P L + D+ + TG+GKT ++ +PI
Sbjct: 27 VLDKEIHKAITRMEFPGLTPVQ----QKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIF 82
Query: 92 QTLSNRAVRC---LRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLA-------VGQSSI 141
Q L N ++A++V PTRDLALQ++ A + ++ GL VG +
Sbjct: 83 QHLINTKFDSQYMVKAVIVAPTRDLALQIE---AEVKKIHDMNYGLKKYACVSLVGGTDF 139
Query: 142 ADEISELIK-RPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCY 200
++++ K RP +I++ATPGRL+D + + Y
Sbjct: 140 RAAMNKMNKLRP---------------------NIVIATPGRLIDVLEKYSNKFFRFVDY 178
Query: 201 LVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFK 260
V+DE DRLL ++ L T+ + N + T L
Sbjct: 179 KVLDEADRLLEIGFRDDLETISGILNEKNSKSADNIKTLL-------------------- 218
Query: 261 DKPYPRLVKMVLSATLTQDPNKLAQ--LDLHHPLFL-TTGETRYKLPERLESYKLICESK 317
SATL KLA ++ LFL T + + ER++ +I E
Sbjct: 219 -----------FSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQSVVISEKF 267
Query: 318 LKPLYLVA--LLQSLGEE----KCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQ 371
++ + + + E K I+F +V+ T LC++L + + + I E+ G Q
Sbjct: 268 ANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQ 327
Query: 372 SVR 374
+ R
Sbjct: 328 NKR 330
>pdb|2PL3|A Chain A, Human Dead-Box Rna Helicase Ddx10, Dead Domain In Complex
With Adp
Length = 236
Score = 76.3 bits (186), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 48/169 (28%), Positives = 81/169 (47%), Gaps = 25/169 (14%)
Query: 58 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSN---RAVRCLRALVVLPTRDLA 114
+ ++TIG L +D+ + TGSGKTL++ +P+++ L + L L++ PTR+LA
Sbjct: 51 IQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLEALYRLQWTSTDGLGVLIISPTRELA 110
Query: 115 LQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVD 174
Q +V + S GL +G + E + + ++
Sbjct: 111 YQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERI----------------------NNIN 148
Query: 175 ILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQ 223
ILV TPGRL+ H++ T F L LV+DE DR+L + + V++
Sbjct: 149 ILVCTPGRLLQHMDETVSFHATDLQMLVLDEADRILDMGFADTMNAVIE 197
>pdb|2GXQ|A Chain A, Hera N-Terminal Domain In Complex With Amp, Crystal Form 1
pdb|2GXS|A Chain A, Hera N-Terminal Domain In Complex With Amp, Crystal Form 2
pdb|2GXS|B Chain B, Hera N-Terminal Domain In Complex With Amp, Crystal Form 2
pdb|2GXU|A Chain A, Hera N-Terminal Domain In Complex With Orthophosphate,
Crystal Form 1
Length = 207
Score = 72.4 bits (176), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 66/221 (29%), Positives = 99/221 (44%), Gaps = 38/221 (17%)
Query: 24 FEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKT 83
F+D PL P + AL G+++ P+Q A + L +DL + TG+GKT
Sbjct: 3 FKDFPLK------PEILEALHGRGLTTPTPIQAAA----LPLALEGKDLIGQARTGTGKT 52
Query: 84 LSYALPIVQTL--SNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSI 141
L++ALPI + L S R RALV+ PTR+LALQV A+AP L V G +
Sbjct: 53 LAFALPIAERLAPSQERGRKPRALVLTPTRELALQVASELTAVAPH--LKVVAVYGGTGY 110
Query: 142 ADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYL 201
+ L++ D +VATPGR +D++ L +
Sbjct: 111 GKQKEALLR---------------------GADAVVATPGRALDYLRQGV-LDLSRVEVA 148
Query: 202 VVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPS 242
V+DE D +L ++ + +L T + A+ LPS
Sbjct: 149 VLDEADEMLSMGFEEEVEALLSATPPSRQTLLFSAT--LPS 187
>pdb|1HV8|A Chain A, Crystal Structure Of A Dead Box Protein From The
Hyperthermophile Methanococcus Jannaschii
pdb|1HV8|B Chain B, Crystal Structure Of A Dead Box Protein From The
Hyperthermophile Methanococcus Jannaschii
Length = 367
Score = 72.0 bits (175), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 46/161 (28%), Positives = 83/161 (51%), Gaps = 27/161 (16%)
Query: 69 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAV 128
E ++ + TGSGKT S+A+P+++ ++ + A+++ PTR+LA+QV D ++
Sbjct: 44 EYNIVAQARTGSGKTASFAIPLIELVNEN--NGIEAIILTPTRELAIQVADEIESLKGNK 101
Query: 129 GLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHIN 188
L + G +I P+++A L++A +I+V TPGR++DHIN
Sbjct: 102 NLKIAKIYGGKAIY---------PQIKA------------LKNA-NIVVGTPGRILDHIN 139
Query: 189 ATRG-FTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSD 228
RG L+++ Y ++DE D L + + +L D
Sbjct: 140 --RGTLNLKNVKYFILDEADEXLNXGFIKDVEKILNACNKD 178
>pdb|3DKP|A Chain A, Human Dead-Box Rna-Helicase Ddx52, Conserved Domain I In
Complex With Adp
Length = 245
Score = 71.2 bits (173), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 54/190 (28%), Positives = 93/190 (48%), Gaps = 25/190 (13%)
Query: 28 PLDHLPCLDPRLKVA---LQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTL 84
P+ LD K+ LQN+ + + F + + + I L R+L ++PTGSGKTL
Sbjct: 23 PIATFQQLDQEYKINSRLLQNI-LDAGFQMPTPIQMQAIPVMLHGRELLASAPTGSGKTL 81
Query: 85 SYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADE 144
++++PI+ L A + RAL++ PTR+LA Q+ I+ G + + + ++++A +
Sbjct: 82 AFSIPILMQLKQPANKGFRALIISPTRELASQIHRELIKISEGTGFRIHM-IHKAAVAAK 140
Query: 145 ISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINAT-RGFTLEHLCYLVV 203
+ P+ DILV TP RL+ + G L + +LVV
Sbjct: 141 --------------KFGPKS-----SKKFDILVTTPNRLIYLLKQDPPGIDLASVEWLVV 181
Query: 204 DETDRLLREA 213
DE+D+L +
Sbjct: 182 DESDKLFEDG 191
>pdb|3MWJ|A Chain A, Q28e Mutant Of Hera N-Terminal Reca-Like Domain, Apo Form
pdb|3MWJ|B Chain B, Q28e Mutant Of Hera N-Terminal Reca-Like Domain, Apo Form
pdb|3MWK|A Chain A, Q28e Mutant Of Hera N-Terminal Reca-Like Domain, Complex
With 8-Oxo- Amp
pdb|3MWK|B Chain B, Q28e Mutant Of Hera N-Terminal Reca-Like Domain, Complex
With 8-Oxo- Amp
pdb|3MWL|A Chain A, Q28e Mutant Of Hera N-Terminal Reca-Like Domain In Complex
With 8- Oxoadenosine
pdb|3MWL|B Chain B, Q28e Mutant Of Hera N-Terminal Reca-Like Domain In Complex
With 8- Oxoadenosine
pdb|3NBF|A Chain A, Q28e Mutant Of Hera Helicase N-Terminal Domain Bound To
8-Oxo-Adp
pdb|3NBF|B Chain B, Q28e Mutant Of Hera Helicase N-Terminal Domain Bound To
8-Oxo-Adp
pdb|3NBF|C Chain C, Q28e Mutant Of Hera Helicase N-Terminal Domain Bound To
8-Oxo-Adp
pdb|3NBF|D Chain D, Q28e Mutant Of Hera Helicase N-Terminal Domain Bound To
8-Oxo-Adp
pdb|3NEJ|A Chain A, Q28e Mutant Of Hera Rna Helicase N-Terminal Domain -
Perfectly Twinned Hexagonal Form
pdb|3NEJ|B Chain B, Q28e Mutant Of Hera Rna Helicase N-Terminal Domain -
Perfectly Twinned Hexagonal Form
Length = 207
Score = 70.9 bits (172), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 65/221 (29%), Positives = 99/221 (44%), Gaps = 38/221 (17%)
Query: 24 FEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKT 83
F+D PL P + AL G+++ P++ A + L +DL + TG+GKT
Sbjct: 3 FKDFPLK------PEILEALHGRGLTTPTPIEAAA----LPLALEGKDLIGQARTGTGKT 52
Query: 84 LSYALPIVQTL--SNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSI 141
L++ALPI + L S R RALV+ PTR+LALQV A+AP L V G +
Sbjct: 53 LAFALPIAERLAPSQERGRKPRALVLTPTRELALQVASELTAVAPH--LKVVAVYGGTGY 110
Query: 142 ADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYL 201
+ L++ D +VATPGR +D++ L +
Sbjct: 111 GKQKEALLR---------------------GADAVVATPGRALDYLRQGV-LDLSRVEVA 148
Query: 202 VVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPS 242
V+DE D +L ++ + +L T + A+ LPS
Sbjct: 149 VLDEADEMLSMGFEEEVEALLSATPPSRQTLLFSAT--LPS 187
>pdb|1VEC|A Chain A, Crystal Structure Of The N-Terminal Domain Of RckP54, A
Human Dead-Box Protein
pdb|1VEC|B Chain B, Crystal Structure Of The N-Terminal Domain Of RckP54, A
Human Dead-Box Protein
Length = 206
Score = 70.9 bits (172), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 58/218 (26%), Positives = 108/218 (49%), Gaps = 37/218 (16%)
Query: 24 FEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKT 83
FED CL L + + MG P+Q +E+I L RD+ + G+GK+
Sbjct: 5 FEDY------CLKRELLMGIFEMGWEKPSPIQ----EESIPIALSGRDILARAKNGTGKS 54
Query: 84 LSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLA-VGQSSIA 142
+Y +P+++ L + ++A+V++PTR+LALQV + ++ +G + +A G +++
Sbjct: 55 GAYLIPLLERLDLKK-DNIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLR 113
Query: 143 DEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFT-LEHLCYL 201
D+I L V +++ATPGR++D I +G ++H+ +
Sbjct: 114 DDI---------------------MRLDDTVHVVIATPGRILDLIK--KGVAKVDHVQMI 150
Query: 202 VVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTF 239
V+DE D+LL + + + ++ LT N ++TF
Sbjct: 151 VLDEADKLLSQDFVQIMEDII-LTLPKNRQILLYSATF 187
>pdb|3EIQ|A Chain A, Crystal Structure Of Pdcd4-eif4a
pdb|3EIQ|D Chain D, Crystal Structure Of Pdcd4-eif4a
Length = 414
Score = 68.2 bits (165), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 47/174 (27%), Positives = 90/174 (51%), Gaps = 22/174 (12%)
Query: 57 AVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQ 116
A+ Q I P + D+ + +G+GKT ++A+ I+Q + ++ +ALV+ PTR+LA Q
Sbjct: 65 AIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIE-LDLKATQALVLAPTRELAQQ 123
Query: 117 VKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDIL 176
++ V A+ +G S +G +++ E+ +L ++EA P I+
Sbjct: 124 IQKVVMALGDYMGASCHACIGGTNVRAEVQKL----QMEA-----PH-----------II 163
Query: 177 VATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNE 230
V TPGR+ D +N R + +++ V+DE D +L ++ + + Q S+ +
Sbjct: 164 VGTPGRVFDMLN-RRYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQKLNSNTQ 216
>pdb|2ZU6|A Chain A, Crystal Structure Of The Eif4a-Pdcd4 Complex
pdb|2ZU6|C Chain C, Crystal Structure Of The Eif4a-Pdcd4 Complex
pdb|2ZU6|D Chain D, Crystal Structure Of The Eif4a-Pdcd4 Complex
pdb|2ZU6|F Chain F, Crystal Structure Of The Eif4a-Pdcd4 Complex
Length = 388
Score = 68.2 bits (165), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 47/174 (27%), Positives = 90/174 (51%), Gaps = 22/174 (12%)
Query: 57 AVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQ 116
A+ Q I P + D+ + +G+GKT ++A+ I+Q + ++ +ALV+ PTR+LA Q
Sbjct: 39 AIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIE-LDLKATQALVLAPTRELAQQ 97
Query: 117 VKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDIL 176
++ V A+ +G S +G +++ E+ +L ++EA P I+
Sbjct: 98 IQKVVMALGDYMGASCHACIGGTNVRAEVQKL----QMEA-----PH-----------II 137
Query: 177 VATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNE 230
V TPGR+ D +N R + +++ V+DE D +L ++ + + Q S+ +
Sbjct: 138 VGTPGRVFDMLN-RRYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQKLNSNTQ 190
>pdb|3BOR|A Chain A, Crystal Structure Of The Deadc Domain Of Human Translation
Initiation Factor 4a-2
Length = 237
Score = 65.5 bits (158), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 46/168 (27%), Positives = 85/168 (50%), Gaps = 24/168 (14%)
Query: 57 AVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQ 116
A+ Q I P + D+ + +G+GKT ++A+ I+Q L + +ALV+ PTR+LA Q
Sbjct: 55 AIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQLEIE-FKETQALVLAPTRELAQQ 113
Query: 117 VKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQS-AVDI 175
++ V A+ +G + +G +++ +E +Q+LQ+ A I
Sbjct: 114 IQKVILALGDYMGATCHACIGGTNVRNE---------------------MQKLQAEAPHI 152
Query: 176 LVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQ 223
+V TPGR+ D +N R + + + V+DE D +L ++ + + Q
Sbjct: 153 VVGTPGRVFDMLN-RRYLSPKWIKMFVLDEADEMLSRGFKDQIYEIFQ 199
>pdb|2VSO|A Chain A, Crystal Structure Of A Translation Initiation Complex
pdb|2VSO|B Chain B, Crystal Structure Of A Translation Initiation Complex
pdb|2VSX|A Chain A, Crystal Structure Of A Translation Initiation Complex
pdb|2VSX|B Chain B, Crystal Structure Of A Translation Initiation Complex
Length = 395
Score = 64.7 bits (156), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 42/168 (25%), Positives = 82/168 (48%), Gaps = 24/168 (14%)
Query: 57 AVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQ 116
A+ Q I P + D+ + +G+GKT ++++ +Q + + +V+ +AL++ PTR+LALQ
Sbjct: 47 AIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRI-DTSVKAPQALMLAPTRELALQ 105
Query: 117 VKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDIL 176
++ V A+A + + V +G +S ++ L I+
Sbjct: 106 IQKVVMALAFHMDIKVHACIGGTSFVEDAEGL----------------------RDAQIV 143
Query: 177 VATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQL 224
V TPGR+ D+I R F + + ++DE D +L ++ + + L
Sbjct: 144 VGTPGRVFDNIQRRR-FRTDKIKMFILDEADEMLSSGFKEQIYQIFTL 190
>pdb|1S2M|A Chain A, Crystal Structure Of The Dead Box Protein Dhh1p
Length = 400
Score = 64.7 bits (156), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 45/180 (25%), Positives = 87/180 (48%), Gaps = 24/180 (13%)
Query: 46 MGI-SSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRA 104
MGI + F + +E I + RD+ + G+GKT ++ +P ++ + + + ++A
Sbjct: 34 MGIFEAGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLEKVKPKLNK-IQA 92
Query: 105 LVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPED 164
L+++PTR+LALQ V + G+S + G +++ D D
Sbjct: 93 LIMVPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRD--------------------D 132
Query: 165 VLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQL 224
+L+ L V ILV TPGR++D + + + L ++DE D++L ++ + +L
Sbjct: 133 ILR-LNETVHILVGTPGRVLD-LASRKVADLSDCSLFIMDEADKMLSRDFKTIIEQILSF 190
>pdb|1QDE|A Chain A, Crystal Structure Of The Atpase Domain Of Translation
Initiation Factor 4a From Saccharomyces Cerevisiae-The
Prototype Of The Dead Box Protein Family
Length = 224
Score = 64.3 bits (155), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 42/168 (25%), Positives = 82/168 (48%), Gaps = 24/168 (14%)
Query: 57 AVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQ 116
A+ Q I P + D+ + +G+GKT ++++ +Q + + +V+ +AL++ PTR+LALQ
Sbjct: 39 AIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRI-DTSVKAPQALMLAPTRELALQ 97
Query: 117 VKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDIL 176
++ V A+A + + V +G +S ++ L I+
Sbjct: 98 IQKVVMALAFHMDIKVHACIGGTSFVEDAEGL----------------------RDAQIV 135
Query: 177 VATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQL 224
V TPGR+ D+I R F + + ++DE D +L ++ + + L
Sbjct: 136 VGTPGRVFDNIQRRR-FRTDKIKMFILDEADEMLSSGFKEQIYQIFTL 182
>pdb|1QVA|A Chain A, Yeast Initiation Factor 4a N-Terminal Domain
Length = 223
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 42/168 (25%), Positives = 82/168 (48%), Gaps = 24/168 (14%)
Query: 57 AVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQ 116
A+ Q I P + D+ + +G+GKT ++++ +Q + + +V+ +AL++ PTR+LALQ
Sbjct: 46 AIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRI-DTSVKAPQALMLAPTRELALQ 104
Query: 117 VKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDIL 176
++ V A+A + + V +G +S ++ L I+
Sbjct: 105 IQKVVMALAFHMDIKVHACIGGTSFVEDAEGL----------------------RDAQIV 142
Query: 177 VATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQL 224
V TPGR+ D+I R F + + ++DE D +L ++ + + L
Sbjct: 143 VGTPGRVFDNIQRRR-FRTDKIKMFILDEADEMLSSGFKEQIYQIFTL 189
>pdb|2I4I|A Chain A, Crystal Structure Of Human Dead-Box Rna Helicase Ddx3x
Length = 417
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 78/309 (25%), Positives = 125/309 (40%), Gaps = 81/309 (26%)
Query: 69 ERDLCINSPTGSGKTLSYALPIV-QTLSNRAVRCLRA----------------LVVLPTR 111
+RDL + TGSGKT ++ LPI+ Q S+ LRA LV+ PTR
Sbjct: 52 KRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAMKENGRYGRRKQYPISLVLAPTR 111
Query: 112 DLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDV---LQE 168
+LA+Q I +E + R ++ + Y D+ +++
Sbjct: 112 ELAVQ------------------------IYEEARKFSYRSRVRPCVVYGGADIGQQIRD 147
Query: 169 LQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSD 228
L+ +LVATPGRL+D + + L+ YLV+DE DR+L ++ P + ++ D
Sbjct: 148 LERGCHLLVATPGRLVDMMERGK-IGLDFCKYLVLDEADRMLDMGFE---PQIRRIVEQD 203
Query: 229 NENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDL 288
T P K +R M+ SAT ++ LA+ L
Sbjct: 204 ---------TMPP------KGVRHT----------------MMFSATFPKEIQMLARDFL 232
Query: 289 HHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEK-CIVFTSSVESTHR 347
+FL G E + + E K +L+ LL + G++ +VF + +
Sbjct: 233 DEYIFLAVGRVG-STSENITQKVVWVEESDKRSFLLDLLNATGKDSLTLVFVETKKGADS 291
Query: 348 LCTLLNHFG 356
L L H G
Sbjct: 292 LEDFLYHEG 300
>pdb|3IUY|A Chain A, Crystal Structure Of Ddx53 Dead-Box Domain
pdb|3IUY|B Chain B, Crystal Structure Of Ddx53 Dead-Box Domain
Length = 228
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 55/206 (26%), Positives = 92/206 (44%), Gaps = 32/206 (15%)
Query: 37 PRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIV----- 91
P L ++ +GI P+Q W I G+ DL + + TG+GKTLSY +P
Sbjct: 29 PDLLKSIIRVGILKPTPIQSQAW-PIILQGI---DLIVVAQTGTGKTLSYLMPGFIHLDS 84
Query: 92 QTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKR 151
Q +S LV+ PTR+LAL V+ + + S+ + G++
Sbjct: 85 QPISREQRNGPGMLVLTPTRELALHVEAECSKYSYKGLKSICIYGGRNRNGQ-------- 136
Query: 152 PKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLR 211
++++ VDI++ATPGRL D + L + YLV+DE D++L
Sbjct: 137 --------------IEDISKGVDIIIATPGRLND-LQMNNSVNLRSITYLVIDEADKMLD 181
Query: 212 EAYQAWLPTVLQLTRSDNENRFSDAS 237
++ + +L R D + + A+
Sbjct: 182 MEFEPQIRKILLDVRPDRQTVMTSAT 207
>pdb|2G9N|A Chain A, Structure Of The Dead Domain Of Human Eukaryotic
Initiation Factor 4a, Eif4a
pdb|2G9N|B Chain B, Structure Of The Dead Domain Of Human Eukaryotic
Initiation Factor 4a, Eif4a
Length = 221
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 46/174 (26%), Positives = 85/174 (48%), Gaps = 22/174 (12%)
Query: 57 AVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQ 116
A+ Q I P + D+ + +G+G T ++A+ I+Q + + +ALV+ PTR+LA Q
Sbjct: 40 AIQQRAILPCIXGYDVIAQAQSGTGXTATFAISILQQI-ELDLXATQALVLAPTRELAQQ 98
Query: 117 VKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDIL 176
++ V A+ +G S +G +++ E+ L ++EA P I+
Sbjct: 99 IQXVVMALGDYMGASCHACIGGTNVRAEVQXL----QMEA-----PH-----------II 138
Query: 177 VATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNE 230
V TPGR+ D +N R + ++ V+DE D +L + + + Q S+ +
Sbjct: 139 VGTPGRVFDMLN-RRYLSPXYIXMFVLDEADEMLSRGFXDQIYDIFQXLNSNTQ 191
>pdb|1WRB|A Chain A, Crystal Structure Of The N-Terminal Reca-Like Domain Of
Djvlgb, A Pranarian Vasa-Like Rna Helicase
pdb|1WRB|B Chain B, Crystal Structure Of The N-Terminal Reca-Like Domain Of
Djvlgb, A Pranarian Vasa-Like Rna Helicase
Length = 253
Score = 62.8 bits (151), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 64/250 (25%), Positives = 106/250 (42%), Gaps = 71/250 (28%)
Query: 60 QETIGPGLFE-RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLR--------ALVVLPT 110
Q+ P + E RD+ + TGSGKT ++ +PI+ L + + R L++ PT
Sbjct: 50 QKNAIPAILEHRDIMACAQTGSGKTAAFLIPIINHLVCQDLNQQRYSKTAYPKCLILAPT 109
Query: 111 RDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICY---DPEDVLQ 167
R+LA+Q I E + L + + Y D ++
Sbjct: 110 RELAIQ------------------------ILSESQKFSLNTPLRSCVVYGGADTHSQIR 145
Query: 168 ELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRS 227
E+Q +LVATPGRL+D I + +LE Y+V+DE DR+L ++ P + ++
Sbjct: 146 EVQMGCHLLVATPGRLVDFIEKNK-ISLEFCKYIVLDEADRMLDMGFE---PQIRKIIEE 201
Query: 228 DNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLD 287
N +PS G+ R ++ SAT ++ KLA
Sbjct: 202 SN----------MPS-----------GINRQ----------TLMFSATFPKEIQKLAADF 230
Query: 288 LHHPLFLTTG 297
L++ +F+T G
Sbjct: 231 LYNYIFMTVG 240
>pdb|1FUU|A Chain A, Yeast Initiation Factor 4a
pdb|1FUU|B Chain B, Yeast Initiation Factor 4a
Length = 394
Score = 62.4 bits (150), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 42/168 (25%), Positives = 79/168 (47%), Gaps = 24/168 (14%)
Query: 57 AVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQ 116
A+ Q I P + D+ + +G+GKT ++++ +Q + + +V+ +AL + PTR+LALQ
Sbjct: 46 AIQQRAIXPIIEGHDVLAQAQSGTGKTGTFSIAALQRI-DTSVKAPQALXLAPTRELALQ 104
Query: 117 VKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDIL 176
++ V A+A + V +G +S ++ L I+
Sbjct: 105 IQKVVXALAFHXDIKVHACIGGTSFVEDAEGL----------------------RDAQIV 142
Query: 177 VATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQL 224
V TPGR+ D+I R F + + ++DE D L ++ + + L
Sbjct: 143 VGTPGRVFDNIQRRR-FRTDKIKXFILDEADEXLSSGFKEQIYQIFTL 189
>pdb|4A4D|A Chain A, Crystal Structure Of The N-Terminal Domain Of The Human
Dead-Box Rna Helicase Ddx5 (P68)
Length = 253
Score = 62.4 bits (150), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 59/238 (24%), Positives = 99/238 (41%), Gaps = 26/238 (10%)
Query: 4 AKKKSMPVLPWMRSPVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETI 63
A++ + V + RS +CP L + + ++ F A+ +
Sbjct: 15 ARRTAQEVETYRRSKEITVRGHNCPKPVLNFYEANFPANVMDVIARQNFTEPTAIQAQGW 74
Query: 64 GPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAV----RCLRALVVLPTRDLALQVKD 119
L D+ + TGSGKTLSY LP + ++++ LV+ PTR+LA QV+
Sbjct: 75 PVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICLVLAPTRELAQQVQQ 134
Query: 120 VFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVAT 179
V A A L G + +I ++L+ V+I +AT
Sbjct: 135 VAAEYCRACRLKSTCIYGGAPKGPQI---------------------RDLERGVEICIAT 173
Query: 180 PGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDAS 237
PGRL+D + + L YLV+DE DR+L ++ + ++ R D + A+
Sbjct: 174 PGRLIDFLECGKT-NLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSAT 230
>pdb|3FE2|A Chain A, Human Dead-Box Rna Helicase Ddx5 (P68), Conserved Domain I
In Complex With Adp
pdb|3FE2|B Chain B, Human Dead-Box Rna Helicase Ddx5 (P68), Conserved Domain I
In Complex With Adp
Length = 242
Score = 62.0 bits (149), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 50/174 (28%), Positives = 79/174 (45%), Gaps = 32/174 (18%)
Query: 71 DLCINSPTGSGKTLSYALPIVQTLSNRAVR-------CLRALVVLPTRDLALQVKDVFAA 123
D+ + TGSGKTLSY LP + ++++ CL V+ PTR+LA QV+ V A
Sbjct: 68 DMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICL---VLAPTRELAQQVQQVAAE 124
Query: 124 IAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRL 183
A L G + +I ++L+ V+I +ATPGRL
Sbjct: 125 YCRACRLKSTCIYGGAPKGPQI---------------------RDLERGVEICIATPGRL 163
Query: 184 MDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDAS 237
+D + + L YLV+DE DR+L ++ + ++ R D + A+
Sbjct: 164 IDFLECGK-TNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSAT 216
>pdb|2HYI|C Chain C, Structure Of The Human Exon Junction Complex With A
Trapped Dead-Box Helicase Bound To Rna
pdb|2HYI|I Chain I, Structure Of The Human Exon Junction Complex With A
Trapped Dead-Box Helicase Bound To Rna
pdb|3EX7|C Chain C, The Crystal Structure Of Ejc In Its Transition State
pdb|3EX7|H Chain H, The Crystal Structure Of Ejc In Its Transition State
Length = 413
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 40/165 (24%), Positives = 80/165 (48%), Gaps = 23/165 (13%)
Query: 57 AVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQ 116
A+ Q I + RD+ S +G+GKT ++++ ++Q L + VR +AL++ PTR+LA+Q
Sbjct: 63 AIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCL-DIQVRETQALILAPTRELAVQ 121
Query: 117 VKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDIL 176
++ A+ + + +G +++ ++I ++L ++
Sbjct: 122 IQKGLLALGDYMNVQCHACIGGTNVGEDI---------------------RKLDYGQHVV 160
Query: 177 VATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTV 221
TPGR+ D I R + LV+DE D +L + ++ + V
Sbjct: 161 AGTPGRVFDMIRR-RSLRTRAIKMLVLDEADEMLNKGFKEQIYDV 204
>pdb|2HXY|A Chain A, Crystal Structure Of Human Apo-Eif4aiii
pdb|2HXY|B Chain B, Crystal Structure Of Human Apo-Eif4aiii
pdb|2HXY|C Chain C, Crystal Structure Of Human Apo-Eif4aiii
pdb|2HXY|D Chain D, Crystal Structure Of Human Apo-Eif4aiii
Length = 391
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 40/165 (24%), Positives = 80/165 (48%), Gaps = 23/165 (13%)
Query: 57 AVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQ 116
A+ Q I + RD+ S +G+GKT ++++ ++Q L + VR +AL++ PTR+LA+Q
Sbjct: 41 AIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCL-DIQVRETQALILAPTRELAVQ 99
Query: 117 VKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDIL 176
++ A+ + + +G +++ ++I ++L ++
Sbjct: 100 IQKGLLALGDYMNVQCHACIGGTNVGEDI---------------------RKLDYGQHVV 138
Query: 177 VATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTV 221
TPGR+ D I R + LV+DE D +L + ++ + V
Sbjct: 139 AGTPGRVFDMIRR-RSLRTRAIKMLVLDEADEMLNKGFKEQIYDV 182
>pdb|2XB2|A Chain A, Crystal Structure Of The Core Mago-Y14-Eif4aiii-Barentsz-
Upf3b Assembly Shows How The Ejc Is Bridged To The Nmd
Machinery
pdb|2XB2|X Chain X, Crystal Structure Of The Core Mago-Y14-Eif4aiii-Barentsz-
Upf3b Assembly Shows How The Ejc Is Bridged To The Nmd
Machinery
Length = 411
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 40/165 (24%), Positives = 80/165 (48%), Gaps = 23/165 (13%)
Query: 57 AVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQ 116
A+ Q I + RD+ S +G+GKT ++++ ++Q L + VR +AL++ PTR+LA+Q
Sbjct: 63 AIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQ-VRETQALILAPTRELAVQ 121
Query: 117 VKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDIL 176
++ A+ + + +G +++ ++I ++L ++
Sbjct: 122 IQKGLLALGDYMNVQCHACIGGTNVGEDI---------------------RKLDYGQHVV 160
Query: 177 VATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTV 221
TPGR+ D I R + LV+DE D +L + ++ + V
Sbjct: 161 AGTPGRVFDMIRR-RSLRTRAIKMLVLDEADEMLNKGFKEQIYDV 204
>pdb|2J0Q|A Chain A, The Crystal Structure Of The Exon Junction Complex At 3.2
A Resolution
pdb|2J0Q|B Chain B, The Crystal Structure Of The Exon Junction Complex At 3.2
A Resolution
pdb|2J0S|A Chain A, The Crystal Structure Of The Exon Junction Complex At 2.2
A Resolution
Length = 410
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 40/165 (24%), Positives = 80/165 (48%), Gaps = 23/165 (13%)
Query: 57 AVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQ 116
A+ Q I + RD+ S +G+GKT ++++ ++Q L + VR +AL++ PTR+LA+Q
Sbjct: 62 AIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQ-VRETQALILAPTRELAVQ 120
Query: 117 VKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDIL 176
++ A+ + + +G +++ ++I ++L ++
Sbjct: 121 IQKGLLALGDYMNVQCHACIGGTNVGEDI---------------------RKLDYGQHVV 159
Query: 177 VATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTV 221
TPGR+ D I R + LV+DE D +L + ++ + V
Sbjct: 160 AGTPGRVFDMIRR-RSLRTRAIKMLVLDEADEMLNKGFKEQIYDV 203
>pdb|2J0U|A Chain A, The Crystal Structure Of Eif4aiii-Barentsz Complex At 3.0
A Resolution
Length = 374
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 41/165 (24%), Positives = 80/165 (48%), Gaps = 23/165 (13%)
Query: 57 AVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQ 116
A+ Q I + RD+ S +G+GKT ++++ ++Q L + VR +AL++ PTR+LA+Q
Sbjct: 26 AIQQRAIKQIIKGRDVIAQSQSGTGKTATFSVSVLQCL-DIQVRETQALILAPTRELAVQ 84
Query: 117 VKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDIL 176
V+ A+ + + +G +++ ++I ++L ++
Sbjct: 85 VQKGLLALGDYMNVQCHACIGGTNVGEDI---------------------RKLDYGQHVV 123
Query: 177 VATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTV 221
TPGR+ D I R + LV+DE D +L + ++ + V
Sbjct: 124 AGTPGRVFDMIR-RRSLRTRAIKMLVLDEADEMLNKGFKEQIYDV 167
>pdb|2J0U|B Chain B, The Crystal Structure Of Eif4aiii-Barentsz Complex At 3.0
A Resolution
Length = 374
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 41/165 (24%), Positives = 80/165 (48%), Gaps = 23/165 (13%)
Query: 57 AVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQ 116
A+ Q I + RD+ S +G+GKT ++++ ++Q L + VR +AL++ PTR+LA+Q
Sbjct: 26 AIQQRAIKQIIKGRDVIAQSQSGTGKTATFSVSVLQCL-DIQVRETQALILAPTRELAVQ 84
Query: 117 VKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDIL 176
V+ A+ + + +G +++ ++I ++L ++
Sbjct: 85 VQKGLLALGDYMNVQSHACIGGTNVGEDI---------------------RKLDYGQHVV 123
Query: 177 VATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTV 221
TPGR+ D I R + LV+DE D +L + ++ + V
Sbjct: 124 AGTPGRVFDMIR-RRSLRTRAIKMLVLDEADEMLNKGFKEQIYDV 167
>pdb|2DB3|A Chain A, Structural Basis For Rna Unwinding By The Dead-Box Protein
Drosophila Vasa
pdb|2DB3|B Chain B, Structural Basis For Rna Unwinding By The Dead-Box Protein
Drosophila Vasa
pdb|2DB3|C Chain C, Structural Basis For Rna Unwinding By The Dead-Box Protein
Drosophila Vasa
pdb|2DB3|D Chain D, Structural Basis For Rna Unwinding By The Dead-Box Protein
Drosophila Vasa
Length = 434
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 47/149 (31%), Positives = 74/149 (49%), Gaps = 26/149 (17%)
Query: 70 RDLCINSPTGSGKTLSYALPIVQTL--SNRAVRCLRALVVL--PTRDLALQVKDVFAAIA 125
RDL + TGSGKT ++ LPI+ L + R VV+ PTR+LA+Q+ + A
Sbjct: 94 RDLMACAQTGSGKTAAFLLPILSKLLEDPHELELGRPQVVIVSPTRELAIQIFNEARKFA 153
Query: 126 PAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMD 185
L +G+ G +S + +E I R C+ +++ATPGRL+D
Sbjct: 154 FESYLKIGIVYGGTSFRHQ-NECITRG------CH--------------VVIATPGRLLD 192
Query: 186 HINATRGFTLEHLCYLVVDETDRLLREAY 214
++ T T E ++V+DE DR+L +
Sbjct: 193 FVDRTF-ITFEDTRFVVLDEADRMLDMGF 220
>pdb|2Z0M|A Chain A, Crystal Structure Of Hypothetical Atp-Dependent Rna
Helicase From Sulfolobus Tokodaii
Length = 337
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/192 (26%), Positives = 90/192 (46%), Gaps = 36/192 (18%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
++ +++ A++ MG + VQ +TI L +++ + + TGSGKT +YA+PI++
Sbjct: 1 MNEKIEQAIREMGFKNFTEVQ----SKTIPLMLQGKNVVVRAKTGSGKTAAYAIPILEL- 55
Query: 95 SNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKL 154
+++LVV PTR+L QV I + V G
Sbjct: 56 ------GMKSLVVTPTRELTRQVASHIRDIGRYMDTKVAEVYG----------------- 92
Query: 155 EAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRG-FTLEHLCYLVVDETDRLLREA 213
G+ Y + + +++A DI+VATPGRL+D ++G L +++DE D +
Sbjct: 93 --GMPYKAQ--INRVRNA-DIVVATPGRLLDL--WSKGVIDLSSFEIVIIDEADLMFEMG 145
Query: 214 YQAWLPTVLQLT 225
+ + +L T
Sbjct: 146 FIDDIKIILAQT 157
>pdb|1XTK|A Chain A, Structure Of Decd To Dead Mutation Of Human Uap56
Length = 390
Score = 48.5 bits (114), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 79/340 (23%), Positives = 134/340 (39%), Gaps = 76/340 (22%)
Query: 17 SPVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINS 76
SP +S F D L P L A+ + G VQ E I + D+ +
Sbjct: 2 SPGHMSGFRDF------LLKPELLRAIVDCGFEHPSEVQ----HECIPQAILGMDVLCQA 51
Query: 77 PTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVK---DVFAAIAPAVGLSVG 133
+G GKT + L +Q L + LV+ TR+LA Q+ + F+ P V ++V
Sbjct: 52 KSGMGKTAVFVLATLQQLEP-VTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVF 110
Query: 134 LAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGF 193
G S DE E++K+ + I+V TPGR++ + +
Sbjct: 111 FG-GLSIKKDE--EVLKK-------------------NCPHIVVGTPGRIL-ALARNKSL 147
Query: 194 TLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRC 253
L+H+ + ++DE D++L + L + R
Sbjct: 148 NLKHIKHFILDEADKMLEQ---------LDMRRD-------------------------- 172
Query: 254 GVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPL-FLTTGETRYKLPERLESYKL 312
V+ F+ P+ + V M+ SATL+++ + + + P+ ET+ L L+ Y +
Sbjct: 173 -VQEIFRMTPHEKQV-MMFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTL-HGLQQYYV 229
Query: 313 ICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLL 352
+ K L LL L + ++F SV+ L LL
Sbjct: 230 KLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLL 269
>pdb|1XTJ|A Chain A, Structure Of Human Uap56 In Complex With Adp
Length = 386
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 68/299 (22%), Positives = 121/299 (40%), Gaps = 66/299 (22%)
Query: 58 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQV 117
V E I + D+ + +G GKT + L +Q L + + LV+ TR+LA Q+
Sbjct: 34 VQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQ-VSVLVMCHTRELAFQI 92
Query: 118 K---DVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVD 174
+ F+ P V ++V G S DE E++K+ +
Sbjct: 93 SKEYERFSKYMPNVKVAVFFG-GLSIKKDE--EVLKK-------------------NCPH 130
Query: 175 ILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFS 234
I+V TPGR++ + + L+H+ + ++DE D++L + L + R
Sbjct: 131 IVVGTPGRIL-ALARNKSLNLKHIKHFILDECDKMLEQ---------LDMRRD------- 173
Query: 235 DASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPL-F 293
V+ F+ P+ + V M+ SATL+++ + + + P+
Sbjct: 174 --------------------VQEIFRMTPHEKQV-MMFSATLSKEIRPVCRKFMQDPMEI 212
Query: 294 LTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLL 352
ET+ L L+ Y + + K L LL L + ++F SV+ L LL
Sbjct: 213 FVDDETKLTL-HGLQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLL 270
>pdb|1XTI|A Chain A, Structure Of Wildtype Human Uap56
Length = 391
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 68/299 (22%), Positives = 120/299 (40%), Gaps = 66/299 (22%)
Query: 58 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQV 117
V E I + D+ + +G GKT + L +Q L + LV+ TR+LA Q+
Sbjct: 34 VQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEP-VTGQVSVLVMCHTRELAFQI 92
Query: 118 K---DVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVD 174
+ F+ P V ++V G S DE E++K+ +
Sbjct: 93 SKEYERFSKYMPNVKVAVFFG-GLSIKKDE--EVLKK-------------------NCPH 130
Query: 175 ILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFS 234
I+V TPGR++ + + L+H+ + ++DE D++L + L + R
Sbjct: 131 IVVGTPGRIL-ALARNKSLNLKHIKHFILDECDKMLEQ---------LDMRRD------- 173
Query: 235 DASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPL-F 293
V+ F+ P+ + V M+ SATL+++ + + + P+
Sbjct: 174 --------------------VQEIFRMTPHEKQV-MMFSATLSKEIRPVCRKFMQDPMEI 212
Query: 294 LTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLL 352
ET+ L L+ Y + + K L LL L + ++F SV+ L LL
Sbjct: 213 FVDDETKLTL-HGLQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLL 270
>pdb|1T6N|A Chain A, Crystal Structure Of The N-Terminal Domain Of Human Uap56
pdb|1T6N|B Chain B, Crystal Structure Of The N-Terminal Domain Of Human Uap56
Length = 220
Score = 45.4 bits (106), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 46/181 (25%), Positives = 80/181 (44%), Gaps = 31/181 (17%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
L P L A+ + G VQ E I + D+ + +G GKT + L +Q L
Sbjct: 21 LKPELLRAIVDCGFEHPSEVQ----HECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQL 76
Query: 95 SNRAVRCLRALVVLPTRDLALQVK---DVFAAIAPAVGLSVGLAVGQSSIADEISELIKR 151
+ + LV+ TR+LA Q+ + F+ P V ++V G S DE E++K+
Sbjct: 77 EPVTGQ-VSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFG-GLSIKKDE--EVLKK 132
Query: 152 PKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLR 211
+ I+V TPGR++ + + L+H+ + ++DE D++L
Sbjct: 133 -------------------NCPHIVVGTPGRILA-LARNKSLNLKHIKHFILDECDKMLE 172
Query: 212 E 212
+
Sbjct: 173 Q 173
>pdb|2ZJ2|A Chain A, Archaeal Dna Helicase Hjm Apo State In Form 1
pdb|2ZJ5|A Chain A, Archaeal Dna Helicase Hjm Complexed With Adp In Form 1
pdb|2ZJ8|A Chain A, Archaeal Dna Helicase Hjm Apo State In Form 2
pdb|2ZJA|A Chain A, Archaeal Dna Helicase Hjm Complexed With Amppcp In Form 2
Length = 720
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 54/111 (48%), Gaps = 9/111 (8%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFE-RDLCINSPTGSGKTLSYALPIVQT 93
+D R+K L+ GI S +P Q E + G+ E ++ I+ PT SGKTL + +V
Sbjct: 8 VDERIKSTLKERGIESFYPPQA----EALKSGILEGKNALISIPTASGKTLIAEIAMVHR 63
Query: 94 LSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADE 144
+ + +A+ ++P + LA + F +GL V +A G DE
Sbjct: 64 ILTQGG---KAVYIVPLKALAEEKFQEFQD-WEKIGLRVAMATGDYDSKDE 110
>pdb|1Q0U|A Chain A, Crystal Structure Of The Bstdead N-Terminal Domain
pdb|1Q0U|B Chain B, Crystal Structure Of The Bstdead N-Terminal Domain
Length = 219
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/160 (25%), Positives = 67/160 (41%), Gaps = 28/160 (17%)
Query: 60 QETIGPGLFERDLCI-NSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVK 118
QE I PG + + S TG+GKT +Y LPI + + ++A++ PTR+LA Q+
Sbjct: 31 QERIIPGALRGESXVGQSQTGTGKTHAYLLPIXEKIKPERAE-VQAVITAPTRELATQI- 88
Query: 119 DVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICY----DPEDVLQELQSAVD 174
+I++ + + C D + L++L
Sbjct: 89 --------------------YHETLKITKFCPKDRXIVARCLIGGTDKQKALEKLNVQPH 128
Query: 175 ILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAY 214
I++ TPGR+ D I + + LVVDE D L +
Sbjct: 129 IVIGTPGRINDFIRE-QALDVHTAHILVVDEADLXLDXGF 167
>pdb|3FHO|A Chain A, Structure Of S. Pombe Dbp5
pdb|3FHO|B Chain B, Structure Of S. Pombe Dbp5
Length = 508
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 33/141 (23%), Positives = 63/141 (44%), Gaps = 27/141 (19%)
Query: 70 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVG 129
R++ S +G+GKT ++AL ++ + + +V +A+ + P+R+LA Q+ DV +
Sbjct: 159 RNMIGQSQSGTGKTAAFALTMLSRV-DASVPKPQAICLAPSRELARQIMDVVTEMGKYTE 217
Query: 130 LSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINA 189
+ + S + K K++A I++ TPG +MD +
Sbjct: 218 VKTAFGIKDS--------VPKGAKIDA-----------------QIVIGTPGTVMD-LMK 251
Query: 190 TRGFTLEHLCYLVVDETDRLL 210
R + V+DE D +L
Sbjct: 252 RRQLDARDIKVFVLDEADNML 272
>pdb|3DL8|A Chain A, Structure Of The Complex Of Aquifex Aeolicus Secyeg And
Bacillus Subtilis Seca
pdb|3DL8|B Chain B, Structure Of The Complex Of Aquifex Aeolicus Secyeg And
Bacillus Subtilis Seca
Length = 779
Score = 37.0 bits (84), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 56/120 (46%), Gaps = 16/120 (13%)
Query: 48 ISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPI-VQTLSNRAVRCLRALV 106
++ +FP +V + G L + ++ TG GKTL+ LP+ + L+ + V +
Sbjct: 76 VTGMFPFKVQLMG---GVALHDGNIA-EMKTGEGKTLTSTLPVYLNALTGKGVHVVTVNE 131
Query: 107 VLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVL 166
L +RD A Q+ +F + GL+VGL + S DE KR A I Y + L
Sbjct: 132 YLASRD-AEQMGKIFEFL----GLTVGLNLNSMS-KDE-----KREAYAADITYSTNNEL 180
>pdb|1M6N|A Chain A, Crystal Structure Of The Seca Translocation Atpase From
Bacillus Subtilis
pdb|1M74|A Chain A, Crystal Structure Of Mg-Adp-Bound Seca From Bacillus
Subtilis
Length = 802
Score = 37.0 bits (84), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 56/120 (46%), Gaps = 16/120 (13%)
Query: 48 ISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPI-VQTLSNRAVRCLRALV 106
++ +FP +V + G L + ++ TG GKTL+ LP+ + L+ + V +
Sbjct: 76 VTGMFPFKVQLMG---GVALHDGNIA-EMKTGEGKTLTSTLPVYLNALTGKGVHVVTVNE 131
Query: 107 VLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVL 166
L +RD A Q+ +F + GL+VGL + S DE KR A I Y + L
Sbjct: 132 YLASRD-AEQMGKIFEFL----GLTVGLNLNSMS-KDE-----KREAYAADITYSTNNEL 180
>pdb|3IQM|A Chain A, Active Site Mutants Of B. Subtilis Seca
Length = 802
Score = 37.0 bits (84), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 56/120 (46%), Gaps = 16/120 (13%)
Query: 48 ISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPI-VQTLSNRAVRCLRALV 106
++ +FP +V + G L + ++ TG GKTL+ LP+ + L+ + V +
Sbjct: 76 VTGMFPFKVQLMG---GVALHDGNIA-EMKTGEGKTLTSTLPVYLNALTGKGVHVVTVNE 131
Query: 107 VLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVL 166
L +RD A Q+ +F + GL+VGL + S DE KR A I Y + L
Sbjct: 132 YLASRD-AEQMGKIFEFL----GLTVGLNLNSMS-KDE-----KREAYAADITYSTNNEL 180
>pdb|2IBM|A Chain A, A Novel Dimer Interface And Conformational Changes
Revealed By An X- Ray Structure Of B. Subtilis Seca
pdb|2IBM|B Chain B, A Novel Dimer Interface And Conformational Changes
Revealed By An X- Ray Structure Of B. Subtilis Seca
Length = 780
Score = 37.0 bits (84), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 56/120 (46%), Gaps = 16/120 (13%)
Query: 48 ISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPI-VQTLSNRAVRCLRALV 106
++ +FP +V + G L + ++ TG GKTL+ LP+ + L+ + V +
Sbjct: 76 VTGMFPFKVQLMG---GVALHDGNIA-EMKTGEGKTLTSTLPVYLNALTGKGVHVVTVNE 131
Query: 107 VLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVL 166
L +RD A Q+ +F + GL+VGL + S DE KR A I Y + L
Sbjct: 132 YLASRD-AEQMGKIFEFL----GLTVGLNLNSMS-KDE-----KREAYAADITYSTNNEL 180
>pdb|3JV2|A Chain A, Crystal Structure Of B. Subtilis Seca With Bound Peptide
pdb|3JV2|B Chain B, Crystal Structure Of B. Subtilis Seca With Bound Peptide
Length = 783
Score = 37.0 bits (84), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 56/120 (46%), Gaps = 16/120 (13%)
Query: 48 ISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPI-VQTLSNRAVRCLRALV 106
++ +FP +V + G L + ++ TG GKTL+ LP+ + L+ + V +
Sbjct: 79 VTGMFPFKVQLMG---GVALHDGNIA-EMKTGEGKTLTSTLPVYLNALTGKGVHVVTVNE 134
Query: 107 VLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVL 166
L +RD A Q+ +F + GL+VGL + S DE KR A I Y + L
Sbjct: 135 YLASRD-AEQMGKIFEFL----GLTVGLNLNSMS-KDE-----KREAYAADITYSTNNEL 183
>pdb|3IQY|A Chain A, Active Site Mutants Of B. Subtilis Seca
Length = 841
Score = 36.6 bits (83), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 56/120 (46%), Gaps = 16/120 (13%)
Query: 48 ISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPI-VQTLSNRAVRCLRALV 106
++ +FP +V + G L + ++ TG GKTL+ LP+ + L+ + V +
Sbjct: 76 VTGMFPFKVQLMG---GVALHDGNIA-EMKTGEGKTLTSTLPVYLNALTGKGVHVVTVNE 131
Query: 107 VLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVL 166
L +RD A Q+ +F + GL+VGL + S DE KR A I Y + L
Sbjct: 132 YLASRD-AEQMGKIFEFL----GLTVGLNLNSMS-KDE-----KREAYAADITYSTNNEL 180
>pdb|1TF2|A Chain A, Crystal Structure Of Seca:adp In An Open Conformation From
Bacillus Subtilis
pdb|1TF5|A Chain A, Crystal Structure Of Seca In An Open Conformation From
Bacillus Subtilis
Length = 844
Score = 36.6 bits (83), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 56/120 (46%), Gaps = 16/120 (13%)
Query: 48 ISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPI-VQTLSNRAVRCLRALV 106
++ +FP +V + G L + ++ TG GKTL+ LP+ + L+ + V +
Sbjct: 79 VTGMFPFKVQLMG---GVALHDGNIA-EMKTGEGKTLTSTLPVYLNALTGKGVHVVTVNE 134
Query: 107 VLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVL 166
L +RD A Q+ +F + GL+VGL + S DE KR A I Y + L
Sbjct: 135 YLASRD-AEQMGKIFEFL----GLTVGLNLNSMS-KDE-----KREAYAADITYSTNNEL 183
>pdb|2VA8|A Chain A, Dna Repair Helicase Hel308
pdb|2VA8|B Chain B, Dna Repair Helicase Hel308
Length = 715
Score = 35.0 bits (79), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 44/164 (26%), Positives = 64/164 (39%), Gaps = 34/164 (20%)
Query: 43 LQNMGISSLFPVQVAVWQETIGPGLFERD-LCINSPTGSGKTLSYALPIVQTLSNRAVRC 101
++ GI L P Q E + GL E + L + SPTGSGKTL + I+ L
Sbjct: 23 IKKRGIKKLNPPQT----EAVKKGLLEGNRLLLTSPTGSGKTLIAEMGIISFLLKNGG-- 76
Query: 102 LRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYD 161
+A+ V P R L + F +G V + G YD
Sbjct: 77 -KAIYVTPLRALTNEKYLTFKD-WELIGFKVAMTSGD---------------------YD 113
Query: 162 PEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDE 205
+D + DI++ T +L D + R L + Y V+DE
Sbjct: 114 TDDAWLK---NYDIIITTYEKL-DSLWRHRPEWLNEVNYFVLDE 153
>pdb|3FHC|B Chain B, Crystal Structure Of Human Dbp5 In Complex With Nup214
Length = 235
Score = 33.9 bits (76), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 31/146 (21%), Positives = 62/146 (42%), Gaps = 34/146 (23%)
Query: 70 RDLCINSPTGSGKTLSYALPIVQTL--SNRAVRCLRALVVLPTRDLALQVKDVFAAIA-- 125
++L S +G+GKT ++ L ++ + +N+ +CL + PT +LALQ V +
Sbjct: 65 QNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCL---CLSPTYELALQTGKVIEQMGKF 121
Query: 126 -PAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLM 184
P + L+ + + +ISE I++ TPG ++
Sbjct: 122 YPELKLAYAVRGNKLERGQKISE--------------------------QIVIGTPGTVL 155
Query: 185 DHINATRGFTLEHLCYLVVDETDRLL 210
D + + + + V+DE D ++
Sbjct: 156 DWCSKLKFIDPKKIKVFVLDEADVMI 181
>pdb|3FMO|B Chain B, Crystal Structure Of The Nucleoporin Nup214 In Complex
With The Dead- Box Helicase Ddx19
Length = 300
Score = 33.1 bits (74), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 31/146 (21%), Positives = 62/146 (42%), Gaps = 34/146 (23%)
Query: 70 RDLCINSPTGSGKTLSYALPIVQTL--SNRAVRCLRALVVLPTRDLALQVKDVFAAIA-- 125
++L S +G+GKT ++ L ++ + +N+ +CL + PT +LALQ V +
Sbjct: 132 QNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCL---CLSPTYELALQTGKVIEQMGKF 188
Query: 126 -PAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLM 184
P + L+ + + +ISE I++ TPG ++
Sbjct: 189 YPELKLAYAVRGNKLERGQKISE--------------------------QIVIGTPGTVL 222
Query: 185 DHINATRGFTLEHLCYLVVDETDRLL 210
D + + + + V+DE D ++
Sbjct: 223 DWCSKLKFIDPKKIKVFVLDEADVMI 248
>pdb|3EWS|A Chain A, Human Dead-Box Rna-Helicase Ddx19 In Complex With Adp
pdb|3EWS|B Chain B, Human Dead-Box Rna-Helicase Ddx19 In Complex With Adp
Length = 445
Score = 32.3 bits (72), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 31/146 (21%), Positives = 62/146 (42%), Gaps = 34/146 (23%)
Query: 70 RDLCINSPTGSGKTLSYALPIVQTL--SNRAVRCLRALVVLPTRDLALQVKDVFAAIA-- 125
++L S +G+GKT ++ L ++ + +N+ +CL + PT +LALQ V +
Sbjct: 102 QNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCL---CLSPTYELALQTGKVIEQMGKF 158
Query: 126 -PAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLM 184
P + L+ + + +ISE I++ TPG ++
Sbjct: 159 YPELKLAYAVRGNKLERGQKISE--------------------------QIVIGTPGTVL 192
Query: 185 DHINATRGFTLEHLCYLVVDETDRLL 210
D + + + + V+DE D ++
Sbjct: 193 DWCSKLKFIDPKKIKVFVLDEADVMI 218
>pdb|3G0H|A Chain A, Human Dead-box Rna Helicase Ddx19, In Complex With An
Atp-analogue And Rna
Length = 424
Score = 32.3 bits (72), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 31/146 (21%), Positives = 62/146 (42%), Gaps = 34/146 (23%)
Query: 70 RDLCINSPTGSGKTLSYALPIVQTL--SNRAVRCLRALVVLPTRDLALQVKDVFAAIA-- 125
++L S +G+GKT ++ L ++ + +N+ +CL + PT +LALQ V +
Sbjct: 81 QNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCL---CLSPTYELALQTGKVIEQMGKF 137
Query: 126 -PAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLM 184
P + L+ + + +ISE I++ TPG ++
Sbjct: 138 YPELKLAYAVRGNKLERGQKISE--------------------------QIVIGTPGTVL 171
Query: 185 DHINATRGFTLEHLCYLVVDETDRLL 210
D + + + + V+DE D ++
Sbjct: 172 DWCSKLKFIDPKKIKVFVLDEADVMI 197
>pdb|3FHT|A Chain A, Crystal Structure Of Human Dbp5 In Complex With Amppnp And
Rna
pdb|3FHT|B Chain B, Crystal Structure Of Human Dbp5 In Complex With Amppnp And
Rna
Length = 412
Score = 32.3 bits (72), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 31/146 (21%), Positives = 62/146 (42%), Gaps = 34/146 (23%)
Query: 70 RDLCINSPTGSGKTLSYALPIVQTL--SNRAVRCLRALVVLPTRDLALQVKDVFAAIA-- 125
++L S +G+GKT ++ L ++ + +N+ +CL + PT +LALQ V +
Sbjct: 65 QNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCL---CLSPTYELALQTGKVIEQMGKF 121
Query: 126 -PAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLM 184
P + L+ + + +ISE I++ TPG ++
Sbjct: 122 YPELKLAYAVRGNKLERGQKISE--------------------------QIVIGTPGTVL 155
Query: 185 DHINATRGFTLEHLCYLVVDETDRLL 210
D + + + + V+DE D ++
Sbjct: 156 DWCSKLKFIDPKKIKVFVLDEADVMI 181
>pdb|3FMP|B Chain B, Crystal Structure Of The Nucleoporin Nup214 In Complex
With The Dead- Box Helicase Ddx19
pdb|3FMP|D Chain D, Crystal Structure Of The Nucleoporin Nup214 In Complex
With The Dead- Box Helicase Ddx19
Length = 479
Score = 32.3 bits (72), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 31/146 (21%), Positives = 62/146 (42%), Gaps = 34/146 (23%)
Query: 70 RDLCINSPTGSGKTLSYALPIVQTL--SNRAVRCLRALVVLPTRDLALQVKDVFAAIA-- 125
++L S +G+GKT ++ L ++ + +N+ +CL + PT +LALQ V +
Sbjct: 132 QNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCL---CLSPTYELALQTGKVIEQMGKF 188
Query: 126 -PAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLM 184
P + L+ + + +ISE I++ TPG ++
Sbjct: 189 YPELKLAYAVRGNKLERGQKISE--------------------------QIVIGTPGTVL 222
Query: 185 DHINATRGFTLEHLCYLVVDETDRLL 210
D + + + + V+DE D ++
Sbjct: 223 DWCSKLKFIDPKKIKVFVLDEADVMI 248
>pdb|4F91|B Chain B, Brr2 Helicase Region
Length = 1724
Score = 32.0 bits (71), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 48/109 (44%), Gaps = 16/109 (14%)
Query: 42 ALQNMGISSLF--------PVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQT 93
AL+N SL+ P+Q V+ + ++ + +PTGSGKT+ I++
Sbjct: 910 ALRNSAFESLYQDKFPFFNPIQTQVFNTVYNS---DDNVFVGAPTGSGKTICAEFAILRM 966
Query: 94 -LSNRAVRCLRALVVLPTRDLALQV-KDVFAAIAPAVGLSVGLAVGQSS 140
L + RC + + P LA QV D + + V L G++S
Sbjct: 967 LLQSSEGRC---VYITPMEALAEQVYMDWYEKFQDRLNKKVVLLTGETS 1012
>pdb|4F92|B Chain B, Brr2 Helicase Region S1087l
pdb|4F93|B Chain B, Brr2 Helicase Region S1087l, Mg-Atp
Length = 1724
Score = 32.0 bits (71), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 48/109 (44%), Gaps = 16/109 (14%)
Query: 42 ALQNMGISSLF--------PVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQT 93
AL+N SL+ P+Q V+ + ++ + +PTGSGKT+ I++
Sbjct: 910 ALRNSAFESLYQDKFPFFNPIQTQVFNTVYNS---DDNVFVGAPTGSGKTICAEFAILRM 966
Query: 94 -LSNRAVRCLRALVVLPTRDLALQV-KDVFAAIAPAVGLSVGLAVGQSS 140
L + RC + + P LA QV D + + V L G++S
Sbjct: 967 LLQSSEGRC---VYITPMEALAEQVYMDWYEKFQDRLNKKVVLLTGETS 1012
>pdb|3P8C|A Chain A, Structure And Control Of The Actin Regulatory Wave Complex
Length = 1253
Score = 29.6 bits (65), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 35/66 (53%), Gaps = 2/66 (3%)
Query: 302 KLPERLESYKLICESKLKPLYLVALLQSLG--EEKCIVFTSSVESTHRLCTLLNHFGELR 359
K ERL++ ESK PL+LV L++ LG ++ I + + RLC L+ F +
Sbjct: 1038 KEGERLDAKMKRLESKYAPLHLVPLIERLGTPQQIAIAREGDLLTKERLCCGLSMFEVIL 1097
Query: 360 IKIKEY 365
+I+ +
Sbjct: 1098 TRIRSF 1103
>pdb|3BXJ|A Chain A, Crystal Structure Of The C2-Gap Fragment Of Syngap
pdb|3BXJ|B Chain B, Crystal Structure Of The C2-Gap Fragment Of Syngap
Length = 483
Score = 29.3 bits (64), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 47/124 (37%), Gaps = 23/124 (18%)
Query: 136 VGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTL 195
+GQ + D I E I+ Y+ E+ VD + T L +H R
Sbjct: 250 IGQKYLKDAIGEFIR-------ALYESEE-----NCEVDPIKCTASSLAEHQANLRMCCE 297
Query: 196 EHLCYLVVDET--DRLLREAYQAWLPTVLQLTRSDNENRFSDASTFL---------PSAF 244
LC +V R L+E + +W + R D +R AS FL PS F
Sbjct: 298 LALCKVVNSHCVFPRELKEVFASWRLRCAERGREDIADRLISASLFLRFLCPAIMSPSLF 357
Query: 245 GSLK 248
G ++
Sbjct: 358 GLMQ 361
>pdb|4E08|A Chain A, Crystal Structure Of Drosophila Melanogaster Dj-1beta
pdb|4E08|B Chain B, Crystal Structure Of Drosophila Melanogaster Dj-1beta
Length = 190
Score = 29.3 bits (64), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 30/69 (43%), Gaps = 1/69 (1%)
Query: 95 SNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSS-IADEISELIKRPK 153
AV+C R + +LP LA D F + GL A+G+SS + D +
Sbjct: 42 GGEAVKCSRDVQILPDTSLAQVASDKFDVVVLPGGLGGSNAMGESSLVGDLLRSQESGGG 101
Query: 154 LEAGICYDP 162
L A IC P
Sbjct: 102 LIAAICAAP 110
>pdb|1WP9|A Chain A, Crystal Structure Of Pyrococcus Furiosus Hef Helicase
Domain
pdb|1WP9|B Chain B, Crystal Structure Of Pyrococcus Furiosus Hef Helicase
Domain
pdb|1WP9|C Chain C, Crystal Structure Of Pyrococcus Furiosus Hef Helicase
Domain
pdb|1WP9|D Chain D, Crystal Structure Of Pyrococcus Furiosus Hef Helicase
Domain
pdb|1WP9|E Chain E, Crystal Structure Of Pyrococcus Furiosus Hef Helicase
Domain
pdb|1WP9|F Chain F, Crystal Structure Of Pyrococcus Furiosus Hef Helicase
Domain
Length = 494
Score = 29.3 bits (64), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 48/184 (26%), Positives = 74/184 (40%), Gaps = 36/184 (19%)
Query: 54 VQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDL 113
+Q ++QE I E + I PTG GKTL + L+ + L++ PT+ L
Sbjct: 8 IQPRIYQEVIYAKCKETNCLIVLPTGLGKTLIAMMIAEYRLTKYGGKV---LMLAPTKPL 64
Query: 114 ALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAV 173
LQ + F + + G+ S +E S+ R K
Sbjct: 65 VLQHAESFRRLFNLPPEKIVALTGEKS-PEERSKAWARAK-------------------- 103
Query: 174 DILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLRE-AY---------QAWLPTVLQ 223
++VATP + + + A R +LE + +V DE R + AY QA P V+
Sbjct: 104 -VIVATPQTIENDLLAGR-ISLEDVSLIVFDEAHRAVGNYAYVFIAREYKRQAKNPLVIG 161
Query: 224 LTRS 227
LT S
Sbjct: 162 LTAS 165
>pdb|2V1X|A Chain A, Crystal Structure Of Human Recq-Like Dna Helicase
pdb|2V1X|B Chain B, Crystal Structure Of Human Recq-Like Dna Helicase
pdb|2WWY|A Chain A, Structure Of Human Recq-Like Helicase In Complex With A
Dna Substrate
pdb|2WWY|B Chain B, Structure Of Human Recq-Like Helicase In Complex With A
Dna Substrate
Length = 591
Score = 28.9 bits (63), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 30/53 (56%), Gaps = 5/53 (9%)
Query: 38 RLKVALQNM-GISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALP 89
++K LQN+ + P+Q+ ETI + +++ + PTG GK+L Y LP
Sbjct: 31 KVKDILQNVFKLEKFRPLQL----ETINVTMAGKEVFLVMPTGGGKSLCYQLP 79
>pdb|1Z14|A Chain A, Structural Determinants Of Tissue Tropism And In Vivo
Pathogenicity For The Parvovirus Minute Virus Of Mice
Length = 549
Score = 28.9 bits (63), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Query: 206 TDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTI 250
T R A W P V Q++ DN N + + +LP+A G+++++
Sbjct: 494 TMRAKLRANTTWNP-VYQVSAEDNGNSYMSVTKWLPTATGNMQSV 537
>pdb|1OYW|A Chain A, Structure Of The Recq Catalytic Core
Length = 523
Score = 28.9 bits (63), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 4/50 (8%)
Query: 40 KVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALP 89
+V + G P Q +E I L RD + PTG GK+L Y +P
Sbjct: 15 QVLQETFGYQQFRPGQ----EEIIDTVLSGRDCLVVXPTGGGKSLCYQIP 60
>pdb|2FZ4|A Chain A, Crystal Structure Of The N-Terminal Half Of Archaeoglobus
Fulgidus Xpb
Length = 237
Score = 28.5 bits (62), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 28/53 (52%), Gaps = 7/53 (13%)
Query: 67 LFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKD 119
L ++ CI PTGSGKT A+ + LS L+V+PT LA Q K+
Sbjct: 106 LVDKRGCIVLPTGSGKT-HVAMAAINELST------PTLIVVPTLALAEQWKE 151
>pdb|1OYY|A Chain A, Structure Of The Recq Catalytic Core Bound To
Atp-Gamma-S
Length = 523
Score = 28.5 bits (62), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 4/50 (8%)
Query: 40 KVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALP 89
+V + G P Q +E I L RD + PTG GK+L Y +P
Sbjct: 15 QVLQETFGYQQFRPGQ----EEIIDTVLSGRDCLVVMPTGGGKSLCYQIP 60
>pdb|2FWR|A Chain A, Structure Of Archaeoglobus Fulgidis Xpb
pdb|2FWR|B Chain B, Structure Of Archaeoglobus Fulgidis Xpb
pdb|2FWR|C Chain C, Structure Of Archaeoglobus Fulgidis Xpb
pdb|2FWR|D Chain D, Structure Of Archaeoglobus Fulgidis Xpb
Length = 472
Score = 28.5 bits (62), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 28/53 (52%), Gaps = 7/53 (13%)
Query: 67 LFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKD 119
L ++ CI PTGSGKT A+ + LS L+V+PT LA Q K+
Sbjct: 106 LVDKRGCIVLPTGSGKT-HVAMAAINELST------PTLIVVPTLALAEQWKE 151
>pdb|4EME|A Chain A, X-Ray Crystal Structure And Specificity Of The Plasmodium
Falciparum Malaria Aminopeptidase
pdb|4EME|B Chain B, X-Ray Crystal Structure And Specificity Of The Plasmodium
Falciparum Malaria Aminopeptidase
pdb|4EME|C Chain C, X-Ray Crystal Structure And Specificity Of The Plasmodium
Falciparum Malaria Aminopeptidase
pdb|4EME|D Chain D, X-Ray Crystal Structure And Specificity Of The Plasmodium
Falciparum Malaria Aminopeptidase
Length = 571
Score = 28.1 bits (61), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Query: 264 YPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLES 309
Y +K ++S TL NK + ++HH LTT +T++ E ++
Sbjct: 176 YENHIKPIISTTLFNQLNKCKRNNVHHDTILTT-DTKFSHKENSQN 220
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.137 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,619,398
Number of Sequences: 62578
Number of extensions: 420652
Number of successful extensions: 1166
Number of sequences better than 100.0: 67
Number of HSP's better than 100.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 31
Number of HSP's that attempted gapping in prelim test: 1065
Number of HSP's gapped (non-prelim): 76
length of query: 375
length of database: 14,973,337
effective HSP length: 100
effective length of query: 275
effective length of database: 8,715,537
effective search space: 2396772675
effective search space used: 2396772675
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)