BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 017196
(375 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q7FGZ2|RH1_ARATH DEAD-box ATP-dependent RNA helicase 1 OS=Arabidopsis thaliana
GN=RH1 PE=2 SV=3
Length = 522
Score = 582 bits (1501), Expect = e-165, Method: Compositional matrix adjust.
Identities = 283/373 (75%), Positives = 326/373 (87%)
Query: 2 EEAKKKSMPVLPWMRSPVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQE 61
+E K + V+PWMR+PVDVS E+C LD LPCL+P+LK AL+NMGISSLFPVQVAVW E
Sbjct: 5 KEDKTEMDSVVPWMRAPVDVSNVENCALDTLPCLNPKLKKALENMGISSLFPVQVAVWHE 64
Query: 62 TIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVF 121
TIGPG FERD+C+NSPTGSGKTLSYALPIVQ L++R VRCLRALVVLPTRDLALQVKDVF
Sbjct: 65 TIGPGGFERDICVNSPTGSGKTLSYALPIVQLLASRPVRCLRALVVLPTRDLALQVKDVF 124
Query: 122 AAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPG 181
AIAPAVGLSVG AVGQSSIA EIS+LIK PKL+AGICYDP+D+ Q L+SAVDILVATPG
Sbjct: 125 DAIAPAVGLSVGSAVGQSSIAGEISQLIKTPKLDAGICYDPDDLSQNLESAVDILVATPG 184
Query: 182 RLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLP 241
RLMDHIN T+GFTLEHL YLVVDETDRLLREAYQ+WLPTVLQLT++ +++ F + F+P
Sbjct: 185 RLMDHINNTKGFTLEHLRYLVVDETDRLLREAYQSWLPTVLQLTQTSDDSLFPSFTPFVP 244
Query: 242 SAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRY 301
SAFGSL+T+RR VERGFK KPYPRLVKMVLSATLTQDP+KL QLDLHHPLF+TTG +RY
Sbjct: 245 SAFGSLQTVRRQSVERGFKGKPYPRLVKMVLSATLTQDPSKLIQLDLHHPLFMTTGGSRY 304
Query: 302 KLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIK 361
+LPE+LE +LICE+ +KP+YLVALL+S EKCI+FTSSVE+T RLC LLN FG+ +IK
Sbjct: 305 RLPEKLECLRLICETGMKPVYLVALLKSWEGEKCIIFTSSVETTRRLCKLLNFFGDPKIK 364
Query: 362 IKEYSGLQRQSVR 374
KEYSG QS+R
Sbjct: 365 AKEYSGGLNQSLR 377
>sp|Q0DWT8|RH1_ORYSJ DEAD-box ATP-dependent RNA helicase 1 OS=Oryza sativa subsp.
japonica GN=Os02g0795900 PE=2 SV=1
Length = 521
Score = 499 bits (1285), Expect = e-140, Method: Compositional matrix adjust.
Identities = 249/368 (67%), Positives = 291/368 (79%), Gaps = 3/368 (0%)
Query: 9 MPVLPWMRSPVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLF 68
+P LPWMR+PVD+ F CP+ HLP LDPRL LQ MGI S FPVQVA W ETIGPG F
Sbjct: 18 VPHLPWMRNPVDIDSFSGCPVAHLPRLDPRLVKPLQRMGIESFFPVQVAAWLETIGPGAF 77
Query: 69 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAV 128
ERD+CINSPTGSGKTL+YALPIVQ L+ R VRCLRALVVLPTRDLALQVK+VF AIAP V
Sbjct: 78 ERDICINSPTGSGKTLAYALPIVQMLATRKVRCLRALVVLPTRDLALQVKEVFDAIAPVV 137
Query: 129 GLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHIN 188
GLSVG AVGQSSIADE+S LI++ K D E + E Q+ VDILVATPGRLMDHI+
Sbjct: 138 GLSVGSAVGQSSIADEVSNLIEKSKQGLFPSLDEEYIQMEPQTKVDILVATPGRLMDHIS 197
Query: 189 ATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENR-FSDASTFLPSAFGSL 247
T+GF+LEHL YLVVDETDR+LREAYQ+WLPTV+QLTRS ++N +SD + + L
Sbjct: 198 MTKGFSLEHLQYLVVDETDRMLREAYQSWLPTVIQLTRSSDQNHSWSDMNG--ETLLHPL 255
Query: 248 KTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERL 307
TIRR GVERGFK K +PRL K+VLSATLTQDP+KL+QL+L HPL L +G+ RY++P +L
Sbjct: 256 TTIRRSGVERGFKGKSFPRLAKIVLSATLTQDPSKLSQLELQHPLLLNSGKKRYRIPTKL 315
Query: 308 ESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSG 367
+SYKL+C+S LKPL L+ LLQ L EKC+VFTSSVES+HRL TLL F +L K EYS
Sbjct: 316 QSYKLVCKSNLKPLSLIVLLQELRGEKCLVFTSSVESSHRLSTLLEFFEDLPFKFSEYSR 375
Query: 368 LQRQSVRR 375
LQR+S RR
Sbjct: 376 LQRESTRR 383
>sp|Q6DRI7|DDX51_DANRE ATP-dependent RNA helicase DDX51 OS=Danio rerio GN=ddx51 PE=2 SV=1
Length = 652
Score = 206 bits (523), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 142/391 (36%), Positives = 203/391 (51%), Gaps = 53/391 (13%)
Query: 2 EEAKKKSMPVLP-WMRSPVDVSLFEDC-----PLDHLPCLDPRLKVALQNMGISSLFPVQ 55
E+ +K VLP W+ P DV + +D P+ +P + P L LQ GI S FPVQ
Sbjct: 159 EKDVQKVKRVLPQWLSQP-DV-IQKDIKSNLIPISEVPGICPTLLRKLQTNGIQSFFPVQ 216
Query: 56 VAVWQ---ETIGPGLF-------ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRAL 105
V E++G GL RD+C+++PTGSGKTL++ +P+VQ LS R VR +RAL
Sbjct: 217 AEVIPAILESVGSGLLVGPGGYRPRDVCVSAPTGSGKTLAFVIPVVQALSKRVVRQVRAL 276
Query: 106 VVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDV 165
VLPT++LA QV +VF+A L V + GQ S A E + L ++ G+ +
Sbjct: 277 AVLPTKELAQQVSNVFSAYTEGSSLKVVMITGQKSFAAEQTAL---SEIRGGVSH----- 328
Query: 166 LQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLT 225
S DI+VATPGRL+DHIN F+L+HL +L++DE DR++ +Q+WL V +
Sbjct: 329 -----SMADIVVATPGRLVDHINKNSSFSLQHLRFLIIDEADRMIDSMHQSWLSQVTKAV 383
Query: 226 RSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQ 285
S + S F + G + P L K++ SATLTQ+P KL
Sbjct: 384 YSTPGE--THTSVFRRTVPGPITAASLS--------PPQIPLQKLLFSATLTQNPEKLQL 433
Query: 286 LDLHHP-LFLTT---------GETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKC 335
LDLH P LF +T + + P+ L Y + C KPL ++ L L
Sbjct: 434 LDLHQPRLFSSTHSLTDNPAQSQDTFHFPQGLSEYYVPCTFSKKPLIILHFLLRLKFSPA 493
Query: 336 IVFTSSVESTHRLCTLLNHFGELRIKIKEYS 366
+ FT+S E HRL L+ FG +++ E+S
Sbjct: 494 LCFTNSREGAHRLYLLVKLFGG--VEVAEFS 522
>sp|Q8N8A6|DDX51_HUMAN ATP-dependent RNA helicase DDX51 OS=Homo sapiens GN=DDX51 PE=1 SV=3
Length = 666
Score = 204 bits (520), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 141/397 (35%), Positives = 203/397 (51%), Gaps = 52/397 (13%)
Query: 7 KSMPVLP-WMRSP--VDVSLFED-CPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQET 62
K P LP W+ P V ++ ED P++ +P + P L+ L+ GISS FPVQ AV
Sbjct: 173 KVQPFLPRWLAEPNCVRRNVTEDLVPIEDIPDVHPDLQKQLRAHGISSYFPVQAAVIPAL 232
Query: 63 ---------IGPGLFE-RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRD 112
+G G + DLC+++PTGSGKTL++ +P+VQ L +R V +RALVVLPT++
Sbjct: 233 LESAACGFLVGRGGYRPSDLCVSAPTGSGKTLAFVIPVVQALLSRVVCHIRALVVLPTKE 292
Query: 113 LALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSA 172
LA QV VF A L V L GQ S+A E L+++ +
Sbjct: 293 LAQQVSKVFNIYTDATPLRVSLVTGQKSLAKEQESLVQK-------------TADGYRCL 339
Query: 173 VDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENR 232
DI+VATPGRL+DHI+ T GF+L+ L +L++DE DR++ +Q+WLP V+
Sbjct: 340 ADIVVATPGRLVDHIDQTPGFSLQQLRFLIIDEADRMIDSMHQSWLPRVVAAA------- 392
Query: 233 FSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPL 292
F P A L+ + V P L K++ SATLTQ+P KL QL LH P
Sbjct: 393 FQSEDPADPCAL--LQRRQAQAVTAASTCCPQMPLQKLLFSATLTQNPEKLQQLGLHQPR 450
Query: 293 FLTTG--------------ETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVF 338
+TG +Y P L + + C KPL ++ L+ +G + + F
Sbjct: 451 LFSTGLAHRGLEDTDGDGDSGKYAFPVGLTHHYVPCSLSSKPLVVLHLVLEMGFSRVLCF 510
Query: 339 TSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRR 375
T+S E++HRL L+ FG + + E+S RR
Sbjct: 511 TNSRENSHRLFLLVQAFGG--VDVAEFSSRYGPGQRR 545
>sp|Q6P9R1|DDX51_MOUSE ATP-dependent RNA helicase DDX51 OS=Mus musculus GN=Ddx51 PE=2 SV=1
Length = 639
Score = 196 bits (499), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 135/392 (34%), Positives = 200/392 (51%), Gaps = 59/392 (15%)
Query: 7 KSMPVLP-WMRSP--VDVSLFED-CPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQET 62
K P LP W+ P V S+ ED P++ +P + P L+ L+ GI+S FPVQ AV
Sbjct: 145 KVQPFLPAWLAKPSCVKKSVTEDLTPIEDIPEVHPDLQKQLRANGITSYFPVQAAVIPAL 204
Query: 63 ---------IGPGLFE-RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRD 112
IG G ++ DLC+++PTGSGKTL++ +P+VQ L +R V +RALVVLPT++
Sbjct: 205 LESADHGFLIGRGGYQPSDLCVSAPTGSGKTLAFVIPVVQALLHRVVCHIRALVVLPTKE 264
Query: 113 LALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSA 172
LA QV VF L V L GQ S+A E L+++ +
Sbjct: 265 LAQQVSKVFNIYTDTTPLRVALVTGQKSLAKEQESLVQK-------------TADGFRCL 311
Query: 173 VDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENR 232
DI+VATPGRL+DHI+ T GF+L+ L +L++DE DR++ +Q+WLP V+
Sbjct: 312 ADIVVATPGRLVDHIDQTPGFSLQQLRFLIIDEADRMIDSMHQSWLPRVVA--------- 362
Query: 233 FSDASTFLPSAFGSLKTIRRC---GVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLH 289
A+ + GS ++R + P L K++ SATLTQDP KL +L L+
Sbjct: 363 ---AAFYSEGPTGSCALLQRTQPQALTAASTCVPQMPLQKLLFSATLTQDPEKLQRLGLY 419
Query: 290 HPLFLTT---------------GETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEK 334
P +T +Y P L + + C KPL ++ L+ + +
Sbjct: 420 QPRLFSTRLGQQSPKDTAEVDENSGKYTFPVGLTHHYVPCRLSSKPLIVLHLVLRMSCSR 479
Query: 335 CIVFTSSVESTHRLCTLLNHFGELRIKIKEYS 366
+ FT+S E++HRL L FG + + E+S
Sbjct: 480 ALCFTNSRENSHRLYLLAQAFGG--VSVAEFS 509
>sp|Q54BD6|DDX51_DICDI Probable ATP-dependent RNA helicase ddx51 OS=Dictyostelium
discoideum GN=ddx51 PE=3 SV=1
Length = 563
Score = 178 bits (451), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 129/350 (36%), Positives = 194/350 (55%), Gaps = 40/350 (11%)
Query: 43 LQNMGISSLFPVQ---VAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAV 99
L+ I +LFPVQ V T G D+C+ +PTGSGKTL+YA+P+VQ + R V
Sbjct: 30 LKEQSIINLFPVQQEIVPFINRTEG-----HDICVCAPTGSGKTLAYAIPLVQKIVKRVV 84
Query: 100 RCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGIC 159
R +R V++PT DL +QV+ F +I L V L++G E LIK
Sbjct: 85 RRVRVAVIVPTHDLVIQVEKTFQSIIKGTDLVV-LSLGVKPFHIEQKLLIKNHSYGEHAL 143
Query: 160 YDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLP 219
Y +S VDI+V+TPGR++DHIN T GFTL++L YLV+DE DRLLR+++Q WL
Sbjct: 144 Y---------ESLVDIIVSTPGRIVDHINETLGFTLKYLNYLVIDEADRLLRQSFQDWLE 194
Query: 220 TVLQLTRSDNE-NRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYP------RLVKMVL 272
V+ T ++ N+ + ++ G ++ + + ++ +LVK++L
Sbjct: 195 IVIDSTNQHSDLNQQQEEQLIKYNSKGDIELFEKSISLKDNNNQMNHLCWSEFKLVKLLL 254
Query: 273 SATLTQDPNKLAQLDLHHPLFLTTGET---RYKLPERLESYKLICESKLKPLYLVALL-Q 328
SAT+T +P+K++ L L+ PLF TT +T +Y +P L+ +I KPL L+ ++ +
Sbjct: 255 SATMTYNPSKISLLQLNAPLFFTTSKTKEIKYSMPSTLKECYIISNGDQKPLVLLNIIYE 314
Query: 329 SL--------GEEKCIVFTSSVESTHRLCTLLNHFGE---LRIKIKEYSG 367
SL ++K I FT SV+ THRL TLL G+ L+ +EYS
Sbjct: 315 SLLKNNANGENKKKIICFTKSVDITHRLNTLLKLIGQVDKLKFTCEEYSS 364
>sp|P26802|DDX51_DROME Probable ATP-dependent RNA helicase Dbp73D OS=Drosophila
melanogaster GN=Dbp73D PE=2 SV=3
Length = 687
Score = 171 bits (432), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 137/411 (33%), Positives = 193/411 (46%), Gaps = 68/411 (16%)
Query: 5 KKKSMPVLP-WMRSPV-----DVSLFEDCP----LDHLPCLDPRLKVALQNMGISSLFPV 54
KKK LP W+ P + E+ P +D L L+ AL+ M I LFPV
Sbjct: 104 KKKVQMQLPNWLAHPTIIEGGSLQPEEEVPASEAIDQLDYLEKYTCQALKQMKIKRLFPV 163
Query: 55 QVAV--W---QETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLP 109
Q V W P RD+C+++PTGSGKTL++A+PIVQ LS R +RALVVLP
Sbjct: 164 QKQVIPWILEAHAKPPPFRPRDICVSAPTGSGKTLAFAIPIVQLLSQRVDCKVRALVVLP 223
Query: 110 TRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQEL 169
+LALQV V + + L V L Q + DE +L+++ K G Y
Sbjct: 224 VAELALQVYRVISELCSKTELEVCLLSKQHKLEDEQEKLVEQYK---GKYY--------- 271
Query: 170 QSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDN 229
S DI+V TPGRL+DH++AT+GF L+ L +LV+DE DR++ +Q WL + +
Sbjct: 272 -SKADIVVTTPGRLVDHLHATKGFCLKSLKFLVIDEADRIMDAVFQNWLYHLDSHVKETT 330
Query: 230 ENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLH 289
+ A T P + L+ F +P+ K++ SATL+QDP KL L L
Sbjct: 331 DQLL--AGTQAPLCYAELQA--------SFGKQPH----KLLFSATLSQDPEKLQDLRLF 376
Query: 290 HPLFLTTGET-------------------------RYKLPERLESYKLICESKLKPLYLV 324
P T T RY P L + E +LKPL +
Sbjct: 377 QPRLFATVLTMPVLKDATEEGADTEALTDPGQFVGRYTTPAELTEQYCVTELRLKPLTVF 436
Query: 325 ALLQSLGEEKCIVFTSSVESTHRLCTLLNH-FGELRIKIKEYSGLQRQSVR 374
AL++ ++ + FT+S + RL +L F + K+ E SG VR
Sbjct: 437 ALVEKYKWKRFLCFTNSSDQATRLTFVLKVLFQKYSTKVSELSGNLSAKVR 487
>sp|Q76PD3|DBP6_SCHPO ATP-dependent RNA helicase dbp6 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=dbp6 PE=2 SV=1
Length = 604
Score = 160 bits (405), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 127/378 (33%), Positives = 180/378 (47%), Gaps = 61/378 (16%)
Query: 6 KKSMPVLP-WMRSPVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIG 64
K VLP W+ P+ V L + +L LQ I+ F VQ AV +
Sbjct: 104 KNITSVLPKWLAEPITVDPNTTVEFSSL-NISSKLVERLQKQNITRGFAVQAAVLPLLLQ 162
Query: 65 PGL------FERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVK 118
G + D+C+++ TGSGKTLSY +PIVQ LS+R V LR +V++PTR+L +QV
Sbjct: 163 DGRHGPMYSYGGDVCVSAATGSGKTLSYVIPIVQCLSHRTVPRLRCVVIVPTRELTVQVA 222
Query: 119 DVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVA 178
F GL V GQ S+ E +L E + +D+LV+
Sbjct: 223 KTFEYYMSGAGLQVCAWTGQKSLRHETYQLNG----------------DENECRIDVLVS 266
Query: 179 TPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRS----DNENRFS 234
TPGRL+DHI F+L+HL Y+V+DE DRLL +++Q W+ TV+ N++
Sbjct: 267 TPGRLVDHIRNDESFSLQHLRYMVIDEADRLLDQSFQDWVDTVMMEISHPKCLQNKSNIL 326
Query: 235 D-----ASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLH 289
D + TFLP +L R P P L K+V SATLT+DP+K+A L LH
Sbjct: 327 DLDQNISPTFLPD-IDTLLPYRL----------PSP-LQKLVFSATLTRDPSKIASLKLH 374
Query: 290 HPLFLTT----------GETR-----YKLPERLESYKLICESKLKPLYLVALLQSLGEEK 334
+P + GE + +P L+ Y + S+ KP+ L L+ S
Sbjct: 375 NPRLVLVQNKDMEVDDGGEIEDDAIVFSVPPTLQEYHVSVSSE-KPILLYHLIHSKNLTN 433
Query: 335 CIVFTSSVESTHRLCTLL 352
+ F S E+ RL LL
Sbjct: 434 ILCFVKSNEAAARLHRLL 451
>sp|A5E726|DBP6_LODEL ATP-dependent RNA helicase DBP6 OS=Lodderomyces elongisporus
(strain ATCC 11503 / CBS 2605 / JCM 1781 / NBRC 1676 /
NRRL YB-4239) GN=DBP6 PE=3 SV=1
Length = 663
Score = 151 bits (381), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 112/361 (31%), Positives = 177/361 (49%), Gaps = 71/361 (19%)
Query: 12 LPWMRSPVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQE--------TI 63
L W+ +P +++ + P P L P + L+++G + F VQV V + +
Sbjct: 207 LDWLTTPEYIAIADTKPFSEFP-LSPFMHENLESLGFENAFAVQVGVLSKLLPEIQANKL 265
Query: 64 GPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAA 123
P F D+ +N+ TGSGKTL+Y++PI+++L +R V +RA+V++PT+ L QV+
Sbjct: 266 RPDAFG-DVLVNASTGSGKTLAYSIPIIESLKDRVVPRVRAIVLVPTKPLINQVRATMLQ 324
Query: 124 IAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRL 183
+A L++ SI +E LI + D++++TPGRL
Sbjct: 325 LALGTNLNIVSLKNDISIREESERLI--------------------ELVPDVVISTPGRL 364
Query: 184 MDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSA 243
++H+ A +L L YLVVDE DRLL +++Q W ++ ++ + +
Sbjct: 365 VEHL-AMDSISLSSLRYLVVDEADRLLNQSFQNWSQILI--------SKIHLQQVYDVAN 415
Query: 244 FGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETR--- 300
SLK + K + SATLT D KLA LD H+P L +++
Sbjct: 416 VWSLK------------------VQKFIFSATLTTDAGKLASLDFHNPRLLIVNDSQRLV 457
Query: 301 ---YKLPERLESYKL---ICESKLKPLYLVALLQSLGEEK---CIVFTSSVESTHRLCTL 351
+ +P L YKL + +S LKPL L L + +EK +VFT S ES+ RLCTL
Sbjct: 458 NELFSVPAMLSEYKLNFGVAKSSLKPLILAKFL--IAQEKLSDVLVFTKSNESSIRLCTL 515
Query: 352 L 352
L
Sbjct: 516 L 516
>sp|A7TFZ9|DBP6_VANPO ATP-dependent RNA helicase DBP6 OS=Vanderwaltozyma polyspora
(strain ATCC 22028 / DSM 70294) GN=DBP6 PE=3 SV=1
Length = 637
Score = 148 bits (374), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 106/326 (32%), Positives = 162/326 (49%), Gaps = 69/326 (21%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGL----------FER---DLCINSPTGSG 81
+DP+L +Q + FP+Q ++ ET+ P L F R D+ +N+ TGSG
Sbjct: 182 IDPKLLKNIQQNFSTDTFPIQ-SILLETLLPTLNFSYNITKKNFTRRVGDVLVNASTGSG 240
Query: 82 KTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSI 141
KTL+Y++PI+Q LS R V LRALV++PT+ L QV + F +A L V ++ ++S+
Sbjct: 241 KTLAYSIPILQILSKRTVNKLRALVIVPTKLLINQVYETFNNLAQGTSLIVSISKLENSL 300
Query: 142 ADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYL 201
+E +L LQ+ DIL+ TPGRL+DH+ + L +L +L
Sbjct: 301 KEENKKL--------------------LQNEPDILITTPGRLVDHLQSG-AVNLRNLKFL 339
Query: 202 VVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKD 261
V+DE DRLL +++Q W +L ++D ++ +P
Sbjct: 340 VLDEADRLLNQSFQNWCNELLNKLKTDKQDH-------MPG------------------- 373
Query: 262 KPYPRLVKMVLSATLTQDPNKLAQLDLHHP-LFLTTGETRYKLPERLESYKL---ICESK 317
+VKMV SATLT + KL L ++P LF+ Y LP L+ Y L ++
Sbjct: 374 ----NIVKMVFSATLTTNTEKLHGLQFYNPKLFVMDSVKLYHLPRMLQEYNLHIPTAKTS 429
Query: 318 LKPLYLVALLQSLGEEKCIVFTSSVE 343
KPL+L+ LL + K +VF S E
Sbjct: 430 YKPLFLLRLLSEINGSKMLVFVKSNE 455
>sp|A2QA23|DBP6_ASPNC ATP-dependent RNA helicase dbp6 OS=Aspergillus niger (strain CBS
513.88 / FGSC A1513) GN=dbp6 PE=3 SV=1
Length = 593
Score = 146 bits (368), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 127/352 (36%), Positives = 175/352 (49%), Gaps = 50/352 (14%)
Query: 13 PWMRSPVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETI-GPGLFERD 71
PW+ +P+ S E L +D L L++ G F VQ V + GP D
Sbjct: 107 PWLANPLRASAQERRKFADL-GIDSSLLRVLEDNGYREAFAVQSTVIPLLLQGPTNHPGD 165
Query: 72 LCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLS 131
LCI++ TGSGKTLSY LP+V L LR L+V+PTR+L Q ++ A GL
Sbjct: 166 LCISAATGSGKTLSYVLPLVTALKPLPAPRLRGLIVVPTRELVKQAREACELCAAGSGLR 225
Query: 132 VGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATR 191
V AVG +I DE E + G + E VDIL+ TPGRL+DH+ T+
Sbjct: 226 VASAVGNVAIKDEQRESL------PGYVHRSE-------PNVDILICTPGRLVDHLRYTK 272
Query: 192 GFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFG-SLKTI 250
GFTL++L +LV+DE DRLL E++Q W+ V+ S + P AFG S +
Sbjct: 273 GFTLKNLEWLVIDEADRLLNESFQEWVDVVMT----------SLDARKAPDAFGFSGNFL 322
Query: 251 RRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTG------------- 297
G+ K+ PR K+VLSAT+T+D KL L L +P + G
Sbjct: 323 SGLGLPIQSKE---PR--KVVLSATMTRDVTKLNSLRLANPKLVVIGSDAAATEDESGGV 377
Query: 298 ---ETRYKLPERLESYKL-ICESKLKPLYLVALLQSLG--EEKCIVFTSSVE 343
+ ++ LP LE + + + + KPLYL+ LL S E K +VFT S E
Sbjct: 378 APSDEQFTLPPTLEEHTVSVGDGSQKPLYLLRLLLSHIKLETKILVFTKSSE 429
>sp|A5DK47|DBP6_PICGU ATP-dependent RNA helicase DBP6 OS=Meyerozyma guilliermondii
(strain ATCC 6260 / CBS 566 / DSM 6381 / JCM 1539 / NBRC
10279 / NRRL Y-324) GN=DBP6 PE=3 SV=2
Length = 631
Score = 143 bits (361), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 120/355 (33%), Positives = 171/355 (48%), Gaps = 74/355 (20%)
Query: 12 LPWMRSPVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQ--------ETI 63
L W+ +P+ S E P +K LQ+ G SS F VQV+V + + I
Sbjct: 176 LDWLATPIYASTTETVPFSSFGLSSSMVK-NLQSNGFSSAFSVQVSVLKLLLPDMESQAI 234
Query: 64 GPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAA 123
P + DL +N+ TGSGKTL YA+PI+++L NR V +RA+V++PT+ L QVK FA
Sbjct: 235 RPDI-GGDLLVNAATGSGKTLGYAIPIIESLRNRIVPRVRAIVLVPTKPLISQVKATFAM 293
Query: 124 IAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRL 183
++ LSV SI DE Q LQ DI+V+TPGRL
Sbjct: 294 LSKNTNLSVVSLRSDISINDEA---------------------QRLQVVPDIIVSTPGRL 332
Query: 184 MDHINATRG-FTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPS 242
++H+ T G L+ L YLV+DE DRLL +++Q W T+ ++R D+ N S+
Sbjct: 333 VEHL--TNGHINLKSLRYLVIDEADRLLNQSFQNWCETL--MSRIDS-NPISELD----- 382
Query: 243 AFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETR-- 300
+T R P + K+V SATLT D +L+ L L P + +
Sbjct: 383 -----QTWR-------------PSVQKLVFSATLTTDAGRLSMLKLQRPRLIIVNDRHEL 424
Query: 301 ----YKLPERLESYKL---ICESKLKPLYLVALLQSLGEEKCI---VFTSSVEST 345
+ +P L+ YKL S KPL L L S E+K + VF S E++
Sbjct: 425 VNELFTVPATLQEYKLSLGSARSSAKPLVLAKFLMS--EQKLVNTLVFAKSNEAS 477
>sp|Q6CKZ4|DBP6_KLULA ATP-dependent RNA helicase DBP6 OS=Kluyveromyces lactis (strain
ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL
Y-1140 / WM37) GN=DBP6 PE=3 SV=1
Length = 630
Score = 138 bits (347), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 100/340 (29%), Positives = 169/340 (49%), Gaps = 72/340 (21%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETI---------GPGLFER---DLCINSPTGSGK 82
LD RL + + S FP+Q ++ + + LF R D+ +N+ TGSGK
Sbjct: 182 LDARLLKNITSNFSSETFPIQTILFDKVLPLLNSSFKANRKLFTRRVGDILVNASTGSGK 241
Query: 83 TLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIA 142
TL+Y++P+VQ L +R V +RA++++PT+ L QV D + ++ L+V ++ ++S+
Sbjct: 242 TLAYSVPLVQILRSRTVNKVRAIILVPTKILIHQVYDCLSKLSQGTSLNVSMSKLENSLK 301
Query: 143 DEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLV 202
+E ++ L ++ DIL+ TPGRL+DH+ F L+ L +LV
Sbjct: 302 EEHNKF--------------------LYNSPDILIITPGRLVDHLQM-ESFDLKTLKFLV 340
Query: 203 VDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDK 262
+DE DRLL +++Q W + +D ++ +R G
Sbjct: 341 LDEADRLLNQSFQNWNQVLFHHLTNDKQD-------------------KRPG-------- 373
Query: 263 PYPRLVKMVLSATLTQDPNKLAQLDLHHP-LFLTTGETRYKLPERLESYKL---ICESKL 318
++KMV SATLT + KL L LH+P +FLT Y +P++L+ + +S
Sbjct: 374 ---NVIKMVFSATLTTNAEKLYNLYLHNPKIFLTDSVKLYSIPKKLQELNVNIPTAKSLF 430
Query: 319 KPLYLVALLQSLGEE-----KCIVFTSSVESTHRLCTLLN 353
KPL L+ ++ + K +VF S E++ RL +LL+
Sbjct: 431 KPLLLLRIIHDIKSSASRNAKILVFVKSNEASIRLESLLH 470
>sp|A3LSJ2|DBP6_PICST ATP-dependent RNA helicase DBP6 OS=Scheffersomyces stipitis (strain
ATCC 58785 / CBS 6054 / NBRC 10063 / NRRL Y-11545)
GN=DBP6 PE=3 SV=2
Length = 591
Score = 136 bits (343), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 103/367 (28%), Positives = 170/367 (46%), Gaps = 70/367 (19%)
Query: 12 LPWMRSPVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVW--------QETI 63
L W+ +P+ S + P + P L L+ ++ F VQ+A+ + +
Sbjct: 138 LDWLATPIYASPEDSKPFSEFE-ISPFLLKNLERDNFTTAFSVQIAIMDILLHDIKRNRL 196
Query: 64 GPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAA 123
P + + D+ +N+ TGSGKTL+Y++PI++ L NR V +RA+V++PT+ L QVK F
Sbjct: 197 EPDV-KGDILVNAATGSGKTLAYSIPIIEALHNRVVPRVRAIVLVPTKPLINQVKATFVQ 255
Query: 124 IAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRL 183
++ LSV SI +E +++ P DI+V+TPGRL
Sbjct: 256 LSRGTNLSVVSLRNDVSIKEEGIKIVNSPP--------------------DIIVSTPGRL 295
Query: 184 MDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSA 243
++HI + + L L +LV+DE DRLL +++Q W ++ D
Sbjct: 296 VEHI-SNKSINLNSLQFLVIDEADRLLNQSFQNWCQVLISSLEGD--------------- 339
Query: 244 FGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETR--- 300
+ +K P K++ SATLT D KL+ L P + + +
Sbjct: 340 ---------VNIAEEWKITPQ----KLIFSATLTTDSGKLSALKFQKPRLVIVNDRKQLV 386
Query: 301 ---YKLPERLESYKL---ICESKLKPLYLVA-LLQSLGEEKCIVFTSSVESTHRLCTLLN 353
+ +P L Y + ++ +KPL L LL++ ++FT S E++ RLC LL
Sbjct: 387 NEIFNVPSSLSEYTIQFGTAKASIKPLILAKYLLENNKLSNVLIFTKSNEASIRLCKLLE 446
Query: 354 -HFGELR 359
FG+L
Sbjct: 447 LMFGKLH 453
>sp|P53734|DBP6_YEAST ATP-dependent RNA helicase DBP6 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=DBP6 PE=1 SV=1
Length = 629
Score = 135 bits (340), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 105/344 (30%), Positives = 167/344 (48%), Gaps = 74/344 (21%)
Query: 49 SSLFPVQVAVWQETIGPGL----------FER---DLCINSPTGSGKTLSYALPIVQTLS 95
++ FP+Q ++ ++I P L F R D+ +N+ TGSGKTL+Y++PIVQTL
Sbjct: 195 TNTFPIQ-SIILDSILPVLNFTLNVSKRNFTRRIGDILVNAATGSGKTLAYSIPIVQTLF 253
Query: 96 NRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLE 155
R + LR ++++PT+ L QV + L V +A ++S+ DE +L LE
Sbjct: 254 KRQINRLRCIIIVPTKLLINQVYTTLTKLTQGTSLIVSIAKLENSLKDEHKKL---SNLE 310
Query: 156 AGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQ 215
DIL+ TPGRL+DH+N + L++L +L++DE DRLL +++Q
Sbjct: 311 P-----------------DILITTPGRLVDHLNM-KSINLKNLKFLIIDEADRLLNQSFQ 352
Query: 216 AWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSAT 275
W P ++ ++D + LP ++KM+ SAT
Sbjct: 353 GWCPKLMSHLKTDKLDT-------LPG-----------------------NVIKMIFSAT 382
Query: 276 LTQDPNKLAQLDLHHP-LFLTTGETRYKLPERLESYKL---ICESKLKPLYLV-ALLQSL 330
LT + KL L+L+ P LFL + Y+LP +L + + +S KPL L+ ++ Q +
Sbjct: 383 LTTNTEKLNGLNLYKPKLFLKQTDKLYQLPNKLNEFNINIPTAKSVYKPLILLYSICQFM 442
Query: 331 GEE----KCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQR 370
K ++F S ES+ RL LL E R + LQ
Sbjct: 443 AHSPIAAKILIFVKSNESSIRLSKLLQLICESRSQSSVLKNLQN 486
>sp|Q6FST5|DBP6_CANGA ATP-dependent RNA helicase DBP6 OS=Candida glabrata (strain ATCC
2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65)
GN=DBP6 PE=3 SV=1
Length = 651
Score = 135 bits (339), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 109/334 (32%), Positives = 167/334 (50%), Gaps = 67/334 (20%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETI---------GPGLFER---DLCINSPTGSGK 82
L P+L ++ S FP+Q A+ + + F R D+ +N+ TGSGK
Sbjct: 200 LTPKLLNNIEKYFSKSTFPIQTAMLDQYLKLINFTLKTSKKNFTRRIGDILVNASTGSGK 259
Query: 83 TLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIA 142
TL+Y++PI+QTLS+R V LR L++LPT+ L QV + +A L + ++ ++S
Sbjct: 260 TLAYSIPIIQTLSSRTVNKLRVLIILPTKLLINQVFQTMSQLAEGTSLVITVSKLENSFN 319
Query: 143 DEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLV 202
+E L+K + DI + TPGRL+DH+ +L +L +LV
Sbjct: 320 EEHKRLLK--------------------TEPDIFITTPGRLVDHL-TNSSISLRNLKFLV 358
Query: 203 VDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDK 262
+DE DRLL +++Q W+P V+ +SD ++ +P +
Sbjct: 359 LDEADRLLNQSFQNWIPEVMSKFKSDKFDQ-------MPGS------------------- 392
Query: 263 PYPRLVKMVLSATLTQDPNKLAQLDLHHP-LFLTTGETRYKLPERLESYKL---ICESKL 318
++KMV SATLT + KL L L++P LF T Y LP L+ Y+L +S
Sbjct: 393 ----IIKMVFSATLTTNTEKLNDLQLYNPTLFATDSVKLYNLPPTLQEYQLQIPSAKSVY 448
Query: 319 KPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLL 352
KPLYL+ LL+ L K +VF S ES+ +L LL
Sbjct: 449 KPLYLLKLLEQLSGGKTLVFVRSNESSLKLEVLL 482
>sp|A6ZSB3|DBP6_YEAS7 ATP-dependent RNA helicase DBP6 OS=Saccharomyces cerevisiae (strain
YJM789) GN=DBP6 PE=3 SV=1
Length = 629
Score = 135 bits (339), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 105/344 (30%), Positives = 167/344 (48%), Gaps = 74/344 (21%)
Query: 49 SSLFPVQVAVWQETIGPGL----------FER---DLCINSPTGSGKTLSYALPIVQTLS 95
++ FP+Q ++ ++I P L F R D+ +N+ TGSGKTL+Y++PIVQTL
Sbjct: 195 TNTFPIQ-SIILDSILPVLNFTLNVSKRNFTRRIGDILVNAATGSGKTLAYSIPIVQTLF 253
Query: 96 NRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLE 155
R + LR ++++PT+ L QV + L V +A ++S+ DE +L LE
Sbjct: 254 KRQINRLRCIIIVPTKLLINQVYTTLTKLTQGTSLIVSIAKLENSLKDEHKKL---SNLE 310
Query: 156 AGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQ 215
DIL+ TPGRL+DH+N + L++L +L++DE DRLL +++Q
Sbjct: 311 P-----------------DILITTPGRLVDHLNM-KSINLKNLKFLIIDEADRLLNQSFQ 352
Query: 216 AWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSAT 275
W P ++ ++D + LP ++KM+ SAT
Sbjct: 353 GWCPKLMSHLKTDKLDT-------LPG-----------------------NVIKMIFSAT 382
Query: 276 LTQDPNKLAQLDLHHP-LFLTTGETRYKLPERLESYKL---ICESKLKPLYLV-ALLQSL 330
LT + KL L+L+ P LFL + Y+LP +L + + +S KPL L+ ++ Q +
Sbjct: 383 LTTNTEKLNGLNLYKPKLFLKQTDKLYQLPNKLNEFNINIPTAKSIYKPLILLYSICQFM 442
Query: 331 GEE----KCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQR 370
K ++F S ES+ RL LL E R + LQ
Sbjct: 443 AHSPIAAKILIFVKSNESSIRLSKLLQLICESRSQSSVLKNLQN 486
>sp|Q6BPT8|DBP6_DEBHA ATP-dependent RNA helicase DBP6 OS=Debaryomyces hansenii (strain
ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968)
GN=DBP6 PE=3 SV=2
Length = 576
Score = 134 bits (336), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 114/377 (30%), Positives = 178/377 (47%), Gaps = 73/377 (19%)
Query: 12 LPWMRSPVDVSLFEDCPLDHL--PCLDPRLKVALQNMGISSLFPVQVAVW--------QE 61
L W+ +P+ + E P P L + L+NMG S F VQ++V +
Sbjct: 112 LDWLTTPIYTAPEETKPFAEFQNPPLSSLMIKNLRNMGFESAFSVQISVLNLMLKDIERN 171
Query: 62 TIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVF 121
+ P + DL +N+ TGSGKTL+Y++PI+++L V +RA++++PT+ L QVK
Sbjct: 172 RLQPDM-RGDLLVNASTGSGKTLAYSIPIIESLQTVKVPRVRAIILVPTKPLINQVKTTL 230
Query: 122 AAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAV-DILVATP 180
++ LS+ S+ +++S IK E GI +LQ+ DI+V+TP
Sbjct: 231 NQLSKGTNLSI------VSLKNDLS--IK----EEGI---------KLQTNEPDIIVSTP 269
Query: 181 GRLMDHINATRGF-TLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTF 239
GRL+DH+ T G+ +L++L YLV+DE DRLL +++Q W
Sbjct: 270 GRLVDHL--TNGYISLKNLQYLVIDEADRLLNQSFQNW-------------------CQI 308
Query: 240 LPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGET 299
L S I+ + +K + KM+ SATLT D KL+ L H P +
Sbjct: 309 LISKIDEFTNIKERNISNSWK----LNVQKMIFSATLTTDAGKLSLLKFHKPRLIIVNNK 364
Query: 300 R------YKLPERLESYKL---ICESKLKPLYLVALLQSLGE-EKCIVFTSSVES----T 345
+ LP L +KL +S LKPL L L S + ++FT S ++ +
Sbjct: 365 EQLVNEMFSLPATLNEFKLQFGSAKSSLKPLILSKFLLSKNKLANVLIFTKSNDASLRLS 424
Query: 346 HRLCTLLNHFGELRIKI 362
L ++N G I I
Sbjct: 425 RLLSLIMNKLGSETINI 441
>sp|Q751D1|DBP6_ASHGO ATP-dependent RNA helicase DBP6 OS=Ashbya gossypii (strain ATCC
10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=DBP6
PE=3 SV=1
Length = 607
Score = 127 bits (320), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 99/318 (31%), Positives = 158/318 (49%), Gaps = 68/318 (21%)
Query: 52 FPVQVAVWQE---------TIGPGLFER---DLCINSPTGSGKTLSYALPIVQTLSNRAV 99
FP+Q A+ ++ + R D+ +N+ TGSGKTL+YA+ ++ LS R V
Sbjct: 185 FPIQTALLDSVLPLMSQAYSVSKRYYTRKVGDILVNASTGSGKTLAYAMLLIHILSRRTV 244
Query: 100 RCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGIC 159
LRA++++PT+ L QV D A+A + V ++ +S+ +E ++L +
Sbjct: 245 NKLRAVILVPTKLLVHQVYDTVQALAKGSSVVVAVSKMDTSLKEESAKLKAQ-------- 296
Query: 160 YDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLP 219
+P D+L+ TPGRL+DH+N + F+L++L +LV+DE DRLL +++Q W
Sbjct: 297 -EP-----------DVLIITPGRLVDHLN-MQTFSLKNLKFLVLDEADRLLNQSFQNWC- 342
Query: 220 TVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQD 279
++ + R ER FK ++KM+ SATLT +
Sbjct: 343 ---------------------------IELMTRLNAERPFKGP--GNVIKMIFSATLTTN 373
Query: 280 PNKLAQLDLHHPLFLTTGETRYKLPERLESYKL---ICESKLKPLYLVALLQSLGEE--K 334
+L L LH+P G Y +P +L+ Y L +S KPL L+ LL L E +
Sbjct: 374 TERLHDLQLHNPKLFLMGSQLYHMPAQLQEYNLPIPTSKSYAKPLILLRLLPLLSTESLR 433
Query: 335 CIVFTSSVESTHRLCTLL 352
+VF S E++ RL LL
Sbjct: 434 ILVFVKSNEASIRLAALL 451
>sp|Q6CDN5|DBP6_YARLI ATP-dependent RNA helicase DBP6 OS=Yarrowia lipolytica (strain CLIB
122 / E 150) GN=DBP6 PE=3 SV=1
Length = 607
Score = 126 bits (316), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 102/356 (28%), Positives = 167/356 (46%), Gaps = 56/356 (15%)
Query: 4 AKKKSMPVLPWMRSPVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAV--W-- 59
++K + P +R+ V + + D L + L +G + F VQ AV W
Sbjct: 165 SRKTQLQTQPILRNATYVEIDDVGSFDEFD-LSKNMMKNLDTLGYTKAFSVQKAVIPWLL 223
Query: 60 --QETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQV 117
Q+ + P + DL +++ TGSGKT +Y +PI++ L +R V +RA+VVLPT+ L +QV
Sbjct: 224 AQQKLLAPDR-KPDLLVSASTGSGKTATYGIPIIEKLRDRIVPRIRAVVVLPTKPLVMQV 282
Query: 118 KDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILV 177
+DV ++ LSV ++ ++ S +R LE DI+V
Sbjct: 283 RDVLENLSKGSSLSV------VALRNDRSTKRERAVLETA----------------DIVV 320
Query: 178 ATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDAS 237
A PGRL++ + ++ +LVVDE DRLL + Y W +VLQ +N+ R
Sbjct: 321 AAPGRLVEQVKENPEL-FSYIEFLVVDEADRLLGQDYYDW-ASVLQ----NNQQRAQAGK 374
Query: 238 TFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHP-LFLTT 296
T L + +R + ++ SATLT +P +A +D+H+P +F+
Sbjct: 375 TNLTEHY-----VR--------------NMQTLIFSATLTANPEHIASMDIHNPGVFVIG 415
Query: 297 GETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLL 352
Y +P+ L + KPL L LL + +VFT S E+ R+ ++
Sbjct: 416 SSDSYSIPKSLTEIVTHVSAAEKPLMLCELLVQRDINRGVVFTKSSETAARVARMM 471
>sp|Q59MW2|DBP6_CANAL ATP-dependent RNA helicase DBP6 OS=Candida albicans (strain SC5314
/ ATCC MYA-2876) GN=DBP6 PE=3 SV=1
Length = 606
Score = 125 bits (314), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 104/370 (28%), Positives = 167/370 (45%), Gaps = 75/370 (20%)
Query: 13 PWMRSPVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQ--------ETIG 64
P SP D F D L + L+ MG + F VQ++V + +
Sbjct: 160 PQYASPSDKKAFTDFKLSSFMIKN------LEKMGFTEAFSVQISVLNMMLPEIEAQKLK 213
Query: 65 PGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAI 124
P D+ +N+ TGSGKTL+Y++PI+++L R V +R ++++PT+ L QVK +
Sbjct: 214 PDRV-GDILVNASTGSGKTLAYSIPIIESLYRRVVPRVRVIILVPTKPLINQVKSTLLQL 272
Query: 125 APAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLM 184
+ L + SI DE L K S DI+V+TPGRL+
Sbjct: 273 SSGTNLQIAALKNDVSINDEKDSLTK--------------------SVPDIIVSTPGRLV 312
Query: 185 DHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAF 244
+H+ L L YL++DE DRLL +++Q W +L S
Sbjct: 313 EHL-LNDSINLSSLQYLIIDEADRLLNQSFQNWSNVLLDKIDSQ---------------- 355
Query: 245 GSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETR---- 300
++ + + V+ K+V SATLT D KL+ L ++P + +++
Sbjct: 356 INIAEVWKLSVQ------------KLVFSATLTTDAGKLSSLKFYNPRLIIVNDSKQLVN 403
Query: 301 --YKLPERLESYKL---ICESKLKPLYLVALLQSLGE-EKCIVFTSSVESTHRLCTLL-N 353
+ +P L +K+ + ++ LKPL L L S + ++FT S ES+ RL LL +
Sbjct: 404 EIFTVPVTLSEFKIHLGVAKNSLKPLILTKFLISTNKLSNVLIFTKSNESSIRLTELLIS 463
Query: 354 HFGELRIKIK 363
F +L I +K
Sbjct: 464 LFQKLSINLK 473
>sp|A6QRQ7|RRP3_AJECN ATP-dependent rRNA helicase RRP3 OS=Ajellomyces capsulata (strain
NAm1 / WU24) GN=RRP3 PE=3 SV=1
Length = 485
Score = 124 bits (310), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 97/315 (30%), Positives = 141/315 (44%), Gaps = 64/315 (20%)
Query: 42 ALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRC 101
A + +G S P+Q E+I L RDL + TGSGKT ++ALPI+Q L N+ +
Sbjct: 73 ACEALGYKSPTPIQA----ESIPLALQGRDLIGLAETGSGKTAAFALPILQALMNKP-QS 127
Query: 102 LRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYD 161
L L++ PTR+LA Q+ + F A+ + + + VG + + L K+P
Sbjct: 128 LFGLILAPTRELACQISEAFEALGSLISVRCAVIVGGMDMVSQAISLGKKPH-------- 179
Query: 162 PEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTV 221
I+VATPGRL+DH+ T+GF+L L YLV+DE DRLL + L +
Sbjct: 180 -------------IIVATPGRLLDHLENTKGFSLRSLKYLVMDEADRLLDLDFGPILDKI 226
Query: 222 LQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPN 281
L++ LP RR + SAT++
Sbjct: 227 LKV---------------LPRE-------RRT----------------YLFSATMSSKVE 248
Query: 282 KLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSS 341
L + L +PL ++ +Y+ L L K K +YLV LL + IVFT +
Sbjct: 249 SLQRASLSNPLRVSISSNKYQTVATLLQSYLFIPHKYKDIYLVYLLNEYAGQSAIVFTRT 308
Query: 342 VESTHRLCTLLNHFG 356
V T RL LL G
Sbjct: 309 VNETQRLAILLRALG 323
>sp|A2RB17|RRP3_ASPNC ATP-dependent rRNA helicase rrp3 OS=Aspergillus niger (strain CBS
513.88 / FGSC A1513) GN=rrp3 PE=3 SV=1
Length = 467
Score = 122 bits (307), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 97/315 (30%), Positives = 143/315 (45%), Gaps = 64/315 (20%)
Query: 42 ALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRC 101
A + MG + P+Q +E+I L RDL + TGSGKT ++ALPI+Q L + +
Sbjct: 62 ACETMGYKAPTPIQ----RESIPLALKGRDLIGLAETGSGKTAAFALPILQALMEKP-QP 116
Query: 102 LRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYD 161
LV+ PTR+LA Q+ F ++ ++G+ + VG + + L K+P
Sbjct: 117 FFGLVLAPTRELAYQISKSFESLGASMGVRSCVIVGGMDMVSQSISLGKKPH-------- 168
Query: 162 PEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTV 221
I+VATPGRL+DH+ T+GF+L +L YLV+DE DRLL + L +
Sbjct: 169 -------------IIVATPGRLLDHLENTKGFSLRNLKYLVMDEADRLLDMDFGPLLDKI 215
Query: 222 LQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPN 281
L++ E R TFL SAT++
Sbjct: 216 LKVL--PRERR-----TFL-------------------------------FSATMSSKVE 237
Query: 282 KLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSS 341
L + L +PL ++ ++Y+ L L K K LYLV LL + I+FT +
Sbjct: 238 SLQRASLSNPLRVSVSTSKYQTVSTLLQSYLFIPQKHKDLYLVYLLNEFAGQSTIIFTRT 297
Query: 342 VESTHRLCTLLNHFG 356
V T RL LL G
Sbjct: 298 VNETQRLAFLLRALG 312
>sp|A1CR32|RRP3_ASPCL ATP-dependent rRNA helicase rrp3 OS=Aspergillus clavatus (strain
ATCC 1007 / CBS 513.65 / DSM 816 / NCTC 3887 / NRRL 1)
GN=rrp3 PE=3 SV=1
Length = 473
Score = 122 bits (306), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 96/316 (30%), Positives = 144/316 (45%), Gaps = 66/316 (20%)
Query: 42 ALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRC 101
A MG + P+Q E+I L +RDL + TGSGKT ++ALPI+Q L ++ +
Sbjct: 67 ACATMGYKAPTPIQA----ESIPLALQDRDLIGLAETGSGKTAAFALPILQALMDKP-QS 121
Query: 102 LRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYD 161
LV+ PTR+LA Q+ F A+ + + + VG + + L K+P
Sbjct: 122 FFGLVLAPTRELAFQISQSFEALGSTINVRCAVIVGGMDMVSQSIALGKKPH-------- 173
Query: 162 PEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTV 221
I+VATPGRL+DH+ T+GF+L L YLV+DE DRLL + L +
Sbjct: 174 -------------IIVATPGRLLDHLENTKGFSLRTLKYLVMDEADRLLDMDFGPLLDKI 220
Query: 222 LQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPN 281
L++ LP RR + SAT++
Sbjct: 221 LKI---------------LPRE-------RRT----------------FLFSATMSSKVE 242
Query: 282 KLAQLDLHHPLFLTTGETRYK-LPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTS 340
L + L +PL ++ +Y+ + L+SY+ I K K +YLV LL + I+FT
Sbjct: 243 SLQRASLSNPLRVSVSSNKYQTVSTLLQSYRFIPH-KHKDIYLVYLLNEFVGQSAIIFTR 301
Query: 341 SVESTHRLCTLLNHFG 356
+V T R+ LL G
Sbjct: 302 TVHETQRISFLLRALG 317
>sp|Q9CWX9|DDX47_MOUSE Probable ATP-dependent RNA helicase DDX47 OS=Mus musculus GN=Ddx47
PE=2 SV=2
Length = 455
Score = 122 bits (305), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 91/304 (29%), Positives = 140/304 (46%), Gaps = 63/304 (20%)
Query: 53 PVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRD 112
P ++ + E I L RD+ + TGSGKT ++ALPI+ L R L ALV+ PTR+
Sbjct: 47 PTKIQI--EAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETPQR-LFALVLTPTRE 103
Query: 113 LALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSA 172
LA Q+ + F A+ ++G+ + VG + L K+P
Sbjct: 104 LAFQISEQFEALGSSIGVQCAVIVGGIDSMSQSLALAKKPH------------------- 144
Query: 173 VDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENR 232
I++ATPGRL+DH+ T+GF L L YLV+DE DR+L ++ + +L++ D +
Sbjct: 145 --IVIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRK-- 200
Query: 233 FSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPL 292
TFL SAT+T+ KL + L +P+
Sbjct: 201 -----TFL-------------------------------FSATMTKKVQKLQRAALKNPV 224
Query: 293 FLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLL 352
++Y+ E+L+ Y L SK K YLV +L L ++F S+ +T R LL
Sbjct: 225 KCAV-SSKYQTVEKLQQYYLFIPSKFKDTYLVYILNELAGNSFMIFCSTCNNTQRTALLL 283
Query: 353 NHFG 356
+ G
Sbjct: 284 RNLG 287
>sp|Q29S22|DDX47_BOVIN Probable ATP-dependent RNA helicase DDX47 OS=Bos taurus GN=DDX47
PE=2 SV=1
Length = 457
Score = 122 bits (305), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 91/304 (29%), Positives = 140/304 (46%), Gaps = 63/304 (20%)
Query: 53 PVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRD 112
P ++ + E I L RD+ + TGSGKT ++ALPI+ L R L ALV+ PTR+
Sbjct: 49 PTKIQI--EAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETPQR-LFALVLTPTRE 105
Query: 113 LALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSA 172
LA Q+ + F A+ ++G+ + VG + L K+P
Sbjct: 106 LAFQISEQFEALGSSIGVQCAVIVGGIDSMSQSLALAKKPH------------------- 146
Query: 173 VDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENR 232
I++ATPGRL+DH+ T+GF L L YLV+DE DR+L ++ + +L++ D +
Sbjct: 147 --IVIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRK-- 202
Query: 233 FSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPL 292
TFL SAT+T+ KL + L +P+
Sbjct: 203 -----TFL-------------------------------FSATMTKKVQKLQRAALKNPV 226
Query: 293 FLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLL 352
++Y+ E+L+ Y L SK K YLV +L L ++F S+ +T R LL
Sbjct: 227 KCAV-SSKYQTVEKLQQYYLFIPSKFKDTYLVYILNELAGNSFMIFCSTCNNTQRTALLL 285
Query: 353 NHFG 356
+ G
Sbjct: 286 RNLG 289
>sp|Q9H0S4|DDX47_HUMAN Probable ATP-dependent RNA helicase DDX47 OS=Homo sapiens GN=DDX47
PE=1 SV=1
Length = 455
Score = 121 bits (304), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 90/304 (29%), Positives = 140/304 (46%), Gaps = 63/304 (20%)
Query: 53 PVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRD 112
P ++ + E I L RD+ + TGSGKT ++ALPI+ L R L ALV+ PTR+
Sbjct: 47 PTKIQI--EAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETPQR-LFALVLTPTRE 103
Query: 113 LALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSA 172
LA Q+ + F A+ ++G+ + VG + L K+P
Sbjct: 104 LAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPH------------------- 144
Query: 173 VDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENR 232
I++ATPGRL+DH+ T+GF L L YLV+DE DR+L ++ + +L++ D +
Sbjct: 145 --IIIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRK-- 200
Query: 233 FSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPL 292
TFL SAT+T+ KL + L +P+
Sbjct: 201 -----TFL-------------------------------FSATMTKKVQKLQRAALKNPV 224
Query: 293 FLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLL 352
++Y+ E+L+ Y + SK K YLV +L L ++F S+ +T R LL
Sbjct: 225 KCAV-SSKYQTVEKLQQYYIFIPSKFKDTYLVYILNELAGNSFMIFCSTCNNTQRTALLL 283
Query: 353 NHFG 356
+ G
Sbjct: 284 RNLG 287
>sp|Q6BQ61|RRP3_DEBHA ATP-dependent rRNA helicase RRP3 OS=Debaryomyces hansenii (strain
ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968)
GN=RRP3 PE=3 SV=2
Length = 477
Score = 121 bits (303), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 92/320 (28%), Positives = 144/320 (45%), Gaps = 65/320 (20%)
Query: 37 PRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSN 96
P L A+Q M + P+Q E I L +D+ + TGSGKT ++A+PI+Q L
Sbjct: 74 PELLEAIQQMKFTKPTPIQ----SEAIPHALEGKDIIGLAQTGSGKTAAFAIPILQALW- 128
Query: 97 RAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEA 156
A LV+ PTR+LA Q+K+ F A+ ++GL VG + D+ +L+++P
Sbjct: 129 EAQAAYYGLVLAPTRELAYQIKETFDALGSSMGLRSVCIVGGMDMMDQARDLMRKPH--- 185
Query: 157 GICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQA 216
ILVATPGR+MDH+ T+GF+L++L YLV+DE DRLL +
Sbjct: 186 ------------------ILVATPGRIMDHLEHTKGFSLKNLKYLVMDEADRLLDMDFGP 227
Query: 217 WLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATL 276
L +L++ + +T+L SAT+
Sbjct: 228 ALDKILKIIPTQR-------TTYL-------------------------------FSATM 249
Query: 277 TQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCI 336
T KL + LH+P+ + +Y+ + L ++ K YL+ LL + I
Sbjct: 250 TNKIAKLQRASLHNPVRVAVS-NKYQTADNLVQSMMLVSDGYKNTYLIHLLNEFLGKSII 308
Query: 337 VFTSSVESTHRLCTLLNHFG 356
+FT + + R L G
Sbjct: 309 IFTRTCAHSQRTALLARILG 328
>sp|Q9P6N8|RRP3_SCHPO ATP-dependent rRNA helicase rrp3 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=rrp3 PE=3 SV=1
Length = 465
Score = 120 bits (302), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 92/315 (29%), Positives = 142/315 (45%), Gaps = 65/315 (20%)
Query: 42 ALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRC 101
A + +G + P+Q QE I L +RD+ + TGSGKT ++ALP++Q L N
Sbjct: 60 ACEKLGFKTPTPIQ----QEAIPVVLNKRDVIGLAQTGSGKTAAFALPVIQELWNNPSPF 115
Query: 102 LRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYD 161
A+V+ PTR+LA Q+ + F AI ++G+ + VG + + L K+P
Sbjct: 116 F-AVVLAPTRELAYQISEQFEAIGGSIGVRSVVIVGGMDMVTQAVALSKKPH-------- 166
Query: 162 PEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTV 221
+LV TPGRLMDH+ T+GF+L++L YL++DE DRLL + + +
Sbjct: 167 -------------VLVCTPGRLMDHLENTKGFSLKNLKYLIMDEADRLLDMDFGPIIDKI 213
Query: 222 LQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPN 281
L++ P+ R ++ SAT+T
Sbjct: 214 LKII-------------------------------------PHERRT-LLFSATMTSKVE 235
Query: 282 KLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSS 341
KL + LH P+ + +++ + L L K K YLV L+ L I+F +
Sbjct: 236 KLQRASLHQPVRVAVS-SKFSTVDTLIQRYLFFPFKHKDTYLVYLVNELAGNSIIIFART 294
Query: 342 VESTHRLCTLLNHFG 356
V T RL LL G
Sbjct: 295 VNDTQRLAILLRTLG 309
>sp|Q5ACU6|RRP3_CANAL ATP-dependent rRNA helicase RRP3 OS=Candida albicans (strain SC5314
/ ATCC MYA-2876) GN=RRP3 PE=3 SV=2
Length = 539
Score = 120 bits (300), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 92/322 (28%), Positives = 150/322 (46%), Gaps = 65/322 (20%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
L P L ++++M + P+Q E I L +D+ + TGSGKT ++A+PI+Q+L
Sbjct: 130 LVPDLLESIESMKFTKPTPIQ----SEAIPHALEGKDIIGLAQTGSGKTAAFAIPILQSL 185
Query: 95 SNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKL 154
+ A + ALV+ PTR+L Q+KD F A+ ++GL VG + D+ +L+++P
Sbjct: 186 WH-AQQPYFALVLAPTRELTFQIKDTFDALGSSMGLRSSCIVGGMDMMDQARDLMRKPH- 243
Query: 155 EAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAY 214
++VATPGR+MDH+ T+GF+L++L YLV+DE DRLL +
Sbjct: 244 --------------------VIVATPGRIMDHLEHTKGFSLKNLKYLVMDEADRLLDMDF 283
Query: 215 QAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSA 274
L +L++ +P I+R + SA
Sbjct: 284 GPALDKILKV---------------IP--------IKRT---------------TYLFSA 305
Query: 275 TLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEK 334
T+T KL + LH+P+ + ++Y+ + L ++ K L+ LL +
Sbjct: 306 TMTNKIEKLQRASLHNPVRVAVS-SKYQTADNLVQSMMLVNDGYKNTILIHLLNEFMGKS 364
Query: 335 CIVFTSSVESTHRLCTLLNHFG 356
IVFT +V R L G
Sbjct: 365 IIVFTRTVAHAQRTALLARILG 386
>sp|P0CQ84|HAS1_CRYNJ ATP-dependent RNA helicase HAS1 OS=Cryptococcus neoformans var.
neoformans serotype D (strain JEC21 / ATCC MYA-565)
GN=HAS1 PE=3 SV=1
Length = 607
Score = 118 bits (295), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 96/356 (26%), Positives = 160/356 (44%), Gaps = 71/356 (19%)
Query: 24 FEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKT 83
+E P L L P A++ MG ++ VQ TI P L +D+ + TGSGKT
Sbjct: 126 YERVPFSTL-NLSPPTTAAIERMGFETMTEVQA----RTIPPLLAGKDVLGAARTGSGKT 180
Query: 84 LSYALPIVQTLSN---RAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSS 140
+++ +P V+ LS + V +++ PTR+LALQ+ V + + G+ +G ++
Sbjct: 181 MAFLIPSVELLSTLRFKPVNGTGVIIISPTRELALQIFGVAKELMQGHSQTFGVLMGGAN 240
Query: 141 IADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCY 200
E +L+K V+++VATPGRL+DH+ T+GF ++L
Sbjct: 241 RKAEADKLVK---------------------GVNLIVATPGRLLDHLQNTKGFVFKNLKA 279
Query: 201 LVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFK 260
LV+DE DR+L ++ + +++L S+N
Sbjct: 280 LVIDEADRILEIGFEEEMKQIIKLLPSENRQ----------------------------- 310
Query: 261 DKPYPRLVKMVLSATLTQDPNKLAQLDLH-HPLFLTTGETR-YKLPERLESYKLICESKL 318
M+ SAT T LA++ L PL++ ET+ + LE ++CES
Sbjct: 311 --------SMLFSATQTTKVTDLARISLRPGPLYINVDETKEASTADMLEQGYVVCESDQ 362
Query: 319 KPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVR 374
+ + L L+ ++K IVF SS S LLN+ + + + + G Q+Q R
Sbjct: 363 RFMLLFTFLKKNLKKKVIVFFSSCNSVKYHAELLNY---IDVPVLDLHGKQKQQKR 415
>sp|P0CQ85|HAS1_CRYNB ATP-dependent RNA helicase HAS1 OS=Cryptococcus neoformans var.
neoformans serotype D (strain B-3501A) GN=HAS1 PE=3 SV=1
Length = 607
Score = 118 bits (295), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 96/356 (26%), Positives = 160/356 (44%), Gaps = 71/356 (19%)
Query: 24 FEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKT 83
+E P L L P A++ MG ++ VQ TI P L +D+ + TGSGKT
Sbjct: 126 YERVPFSTL-NLSPPTTAAIERMGFETMTEVQA----RTIPPLLAGKDVLGAARTGSGKT 180
Query: 84 LSYALPIVQTLSN---RAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSS 140
+++ +P V+ LS + V +++ PTR+LALQ+ V + + G+ +G ++
Sbjct: 181 MAFLIPSVELLSTLRFKPVNGTGVIIISPTRELALQIFGVAKELMQGHSQTFGVLMGGAN 240
Query: 141 IADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCY 200
E +L+K V+++VATPGRL+DH+ T+GF ++L
Sbjct: 241 RKAEADKLVK---------------------GVNLIVATPGRLLDHLQNTKGFVFKNLKA 279
Query: 201 LVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFK 260
LV+DE DR+L ++ + +++L S+N
Sbjct: 280 LVIDEADRILEIGFEEEMKQIIKLLPSENRQ----------------------------- 310
Query: 261 DKPYPRLVKMVLSATLTQDPNKLAQLDLH-HPLFLTTGETR-YKLPERLESYKLICESKL 318
M+ SAT T LA++ L PL++ ET+ + LE ++CES
Sbjct: 311 --------SMLFSATQTTKVTDLARISLRPGPLYINVDETKEASTADMLEQGYVVCESDQ 362
Query: 319 KPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVR 374
+ + L L+ ++K IVF SS S LLN+ + + + + G Q+Q R
Sbjct: 363 RFMLLFTFLKKNLKKKVIVFFSSCNSVKYHAELLNY---IDVPVLDLHGKQKQQKR 415
>sp|A1D405|RRP3_NEOFI ATP-dependent rRNA helicase rrp3 OS=Neosartorya fischeri (strain
ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=rrp3
PE=3 SV=1
Length = 472
Score = 117 bits (294), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 92/315 (29%), Positives = 138/315 (43%), Gaps = 64/315 (20%)
Query: 42 ALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRC 101
A + MG + P+Q E+I L RDL + TGSGKT ++ALPI+Q L + +
Sbjct: 66 ACETMGYKAPTPIQA----ESIPLALQGRDLIGLAETGSGKTAAFALPILQALMEKP-QS 120
Query: 102 LRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYD 161
L++ PTR+LA Q+ F ++ + + + VG + + L K+P
Sbjct: 121 FFGLILAPTRELAFQISKSFESLGSTINVRCAVIVGGMDMVSQSIALGKKPH-------- 172
Query: 162 PEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTV 221
I+VATPGRL+DH+ T+GF+L L YLV+DE DRLL + L +
Sbjct: 173 -------------IIVATPGRLLDHLENTKGFSLRTLKYLVMDEADRLLDMDFGPLLDKI 219
Query: 222 LQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPN 281
L++ LP RR + SAT++
Sbjct: 220 LKV---------------LPRE-------RRT----------------FLFSATMSSKVE 241
Query: 282 KLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSS 341
L + L +PL ++ +Y+ L L K K +YLV LL + I+FT +
Sbjct: 242 SLQRASLSNPLRVSVSSNKYQTVSTLLQSYLFLPHKHKDIYLVYLLNEFVGQSAIIFTRT 301
Query: 342 VESTHRLCTLLNHFG 356
V T R+ LL G
Sbjct: 302 VHETQRISFLLRSLG 316
>sp|Q5B5E7|RRP3_EMENI ATP-dependent rRNA helicase rrp3 OS=Emericella nidulans (strain
FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139)
GN=rrp3 PE=3 SV=1
Length = 465
Score = 117 bits (293), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 90/316 (28%), Positives = 141/316 (44%), Gaps = 67/316 (21%)
Query: 42 ALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRC 101
A +NMG + P+Q + I L RD+ + TGSGKT ++ALP++Q L A +
Sbjct: 60 ACENMGYKAPTPIQ----SQAIPLALEGRDVIGLAETGSGKTAAFALPMLQALME-APQT 114
Query: 102 LRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYD 161
L LV+ PTR+LA Q+ F + +G+ + VG + + L K+P
Sbjct: 115 LFGLVLAPTRELAYQISQAFETLGSTIGVRCAVIVGGMDMVAQSIALGKKPH-------- 166
Query: 162 PEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTV 221
I+VATPGRL+DH+ T+GF+L +L YL +DE DRLL + L +
Sbjct: 167 -------------IIVATPGRLLDHLENTKGFSLRNLKYLAIDEADRLLDMDFGESLDKI 213
Query: 222 LQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVL-SATLTQDP 280
+++ PR L SAT++
Sbjct: 214 IRI---------------------------------------LPRTRHTYLFSATMSTKV 234
Query: 281 NKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTS 340
L + L +P+ ++ ++Y+ L+S + K K LYLV LL + I+FT+
Sbjct: 235 ESLQRASLSNPVRVSV-SSKYQTVSTLQSSYICIPHKHKNLYLVYLLNEFAGQSAIIFTT 293
Query: 341 SVESTHRLCTLLNHFG 356
+V T R+ +L G
Sbjct: 294 TVHETQRVAFMLRALG 309
>sp|Q1E1N5|RRP3_COCIM ATP-dependent rRNA helicase RRP3 OS=Coccidioides immitis (strain
RS) GN=RRP3 PE=3 SV=1
Length = 474
Score = 117 bits (292), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 92/304 (30%), Positives = 136/304 (44%), Gaps = 62/304 (20%)
Query: 53 PVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRD 112
P Q+ E+I L RDL + TGSGKT ++ALPI+Q L ++ + + LV+ PTR+
Sbjct: 71 PTQIQA--ESIPLALQGRDLIGLAETGSGKTAAFALPILQALMDKP-QSMFGLVLAPTRE 127
Query: 113 LALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSA 172
LA Q+ F A+ + + + VG + + L K+P
Sbjct: 128 LAYQISQQFEALGSLISVRCAVIVGGMDMVSQAIALGKKPH------------------- 168
Query: 173 VDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENR 232
I+VATPGRL+DH+ T+GF+L L YLV+DE DRLL + L +L++
Sbjct: 169 --IIVATPGRLLDHLENTKGFSLRSLKYLVMDEADRLLDLDFGPILDKILKV-------- 218
Query: 233 FSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPL 292
LP RR + SAT++ L + L +PL
Sbjct: 219 -------LPKE-------RRT----------------YLFSATMSSKVESLQRASLSNPL 248
Query: 293 FLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLL 352
++ +Y+ L LI K K +YL+ LL + I+FT +V T RL LL
Sbjct: 249 RVSVSSNKYQTVSTLLQNCLIIPHKHKDIYLIYLLNEFPGQSVIIFTRTVNETQRLAILL 308
Query: 353 NHFG 356
G
Sbjct: 309 RALG 312
>sp|Q6FIL3|HAS1_CANGA ATP-dependent RNA helicase HAS1 OS=Candida glabrata (strain ATCC
2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65)
GN=HAS1 PE=3 SV=1
Length = 494
Score = 116 bits (291), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 100/359 (27%), Positives = 163/359 (45%), Gaps = 75/359 (20%)
Query: 25 EDCPLDH----LPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGS 80
E +DH L P ++ A++ MG S + PVQ TI P + RD+ + TGS
Sbjct: 23 ESSDVDHSFKSLNLSQPTMR-AIEKMGFSKMTPVQA----RTIPPLMAGRDVLGAAKTGS 77
Query: 81 GKTLSYALPIVQTLSNRAVRCLRA---LVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVG 137
GKTL++ LP ++ L + + +++ PTR+LALQ+ V + + G+ +G
Sbjct: 78 GKTLAFLLPTIELLHSLKFKPRNGTGVIIITPTRELALQIFGVVRELMEFHSQTFGIVIG 137
Query: 138 QSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEH 197
++ E +L+K V++LVATPGRL+DH+ T+GF ++
Sbjct: 138 GANRRQEAEKLMK---------------------GVNLLVATPGRLLDHLQNTKGFIFKN 176
Query: 198 LCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVER 257
L LV+DE DR+L ++ + ++++ NE+R S
Sbjct: 177 LKALVIDEADRILEIGFEDEMRQIIKIL--PNEDRQS----------------------- 211
Query: 258 GFKDKPYPRLVKMVLSATLTQDPNKLAQLDLH-HPLFLT-TGETRYKLPERLESYKLICE 315
M+ SAT T L+++ L PLF+ E + LE ++CE
Sbjct: 212 ------------MLFSATQTTKVEDLSRISLRPGPLFINVVSEHDSSTADGLEQGYVVCE 259
Query: 316 SKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVR 374
S + L L + L+ ++K IVF SS S LLN+ + + + E G Q+Q R
Sbjct: 260 SDKRFLLLFSFLKRNQKKKIIVFLSSCNSVKYYAELLNY---IDLPVLELHGKQKQQKR 315
>sp|Q4WJE9|RRP3_ASPFU ATP-dependent rRNA helicase rrp3 OS=Neosartorya fumigata (strain
ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=rrp3
PE=3 SV=1
Length = 472
Score = 116 bits (291), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 92/315 (29%), Positives = 137/315 (43%), Gaps = 64/315 (20%)
Query: 42 ALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRC 101
A + MG + P+Q E+I L RDL + TGSGKT ++ALPI+Q L +
Sbjct: 66 ACETMGYKAPTPIQA----ESIPLALQGRDLIGLAETGSGKTAAFALPILQALMENP-QS 120
Query: 102 LRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYD 161
L++ PTR+LA Q+ F ++ + + + VG + + L K+P
Sbjct: 121 FFGLILAPTRELAFQISKSFESLGSTINVRCAVIVGGMDMVSQSIALGKKPH-------- 172
Query: 162 PEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTV 221
I+VATPGRL+DH+ T+GF+L L YLV+DE DRLL + L +
Sbjct: 173 -------------IIVATPGRLLDHLENTKGFSLRTLKYLVMDEADRLLDMDFGPLLDKI 219
Query: 222 LQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPN 281
L++ LP RR + SAT++
Sbjct: 220 LKV---------------LPRE-------RRT----------------FLFSATMSSKVE 241
Query: 282 KLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSS 341
L + L +PL ++ +Y+ L L K K +YLV LL + I+FT +
Sbjct: 242 SLQRASLSNPLRVSVSSNKYQTVSTLLQSYLFLPHKHKDIYLVYLLNEFVGQSTIIFTRT 301
Query: 342 VESTHRLCTLLNHFG 356
V T R+ LL G
Sbjct: 302 VHETQRISFLLRSLG 316
>sp|A5DQF1|RRP3_PICGU ATP-dependent rRNA helicase RRP3 OS=Meyerozyma guilliermondii
(strain ATCC 6260 / CBS 566 / DSM 6381 / JCM 1539 / NBRC
10279 / NRRL Y-324) GN=RRP3 PE=3 SV=2
Length = 475
Score = 116 bits (290), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 91/320 (28%), Positives = 143/320 (44%), Gaps = 65/320 (20%)
Query: 37 PRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSN 96
P L A++ + + P+Q I L +D+ + TGSGKT ++A+PI+Q+L
Sbjct: 73 PELMEAIEKLKYTKPTPIQSGA----IPHALEGKDIIGLAQTGSGKTAAFAIPILQSLWE 128
Query: 97 RAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEA 156
A R ALV+ PTR+LA Q+K+ F A+ +G+ VG + D+ +L+++P
Sbjct: 129 -AQRPYYALVLAPTRELAYQIKETFDALGSGMGVRSVCIVGGMDMMDQARDLMRKPH--- 184
Query: 157 GICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQA 216
ILVATPGR+MDH+ T+GF+L+ L YLV+DE DRLL +
Sbjct: 185 ------------------ILVATPGRIMDHLENTKGFSLKSLQYLVMDEADRLLDMDFGP 226
Query: 217 WLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATL 276
L +L++ + +T+L SAT+
Sbjct: 227 ALDKILKVIPTKR-------TTYL-------------------------------FSATM 248
Query: 277 TQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCI 336
T KL + LH P+ + +Y+ + L ++ K +L+ LL + I
Sbjct: 249 TNKIAKLQRASLHEPVKVAVS-NKYQTADNLVQSMMLVSDGYKNTFLIHLLNEFMGKSII 307
Query: 337 VFTSSVESTHRLCTLLNHFG 356
VFT + T R L G
Sbjct: 308 VFTRTCAHTQRSTLLARILG 327
>sp|A7TJM9|DRS1_VANPO ATP-dependent RNA helicase DRS1 OS=Vanderwaltozyma polyspora
(strain ATCC 22028 / DSM 70294) GN=DRS1 PE=3 SV=1
Length = 752
Score = 115 bits (289), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 100/355 (28%), Positives = 155/355 (43%), Gaps = 74/355 (20%)
Query: 27 CPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSY 86
+ L P LK L ++G + P+Q A TI GL +D+ + TGSGKT ++
Sbjct: 231 STFNSLTLSRPVLK-GLSDLGYTKPSPIQSA----TIPIGLSGKDIIAGAVTGSGKTAAF 285
Query: 87 ALPIVQTLSNR--AVRCLRALVVLPTRDLALQVKDVFAAIAPAV-GLSVGLAVGQSSIAD 143
+PI++ L + V R +V+ PTR+LA+Q+ DV I V GL+ GLAVG ++
Sbjct: 286 MIPIIERLLYKPAKVASTRVIVLTPTRELAIQIADVGKKIGKYVSGLTFGLAVGGLNLRQ 345
Query: 144 EISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVV 203
+ EL RP DI++ATPGR +DH+ + F ++ + LV+
Sbjct: 346 QEQELKTRP---------------------DIVIATPGRFIDHVRNSSSFNVDSVEVLVM 384
Query: 204 DETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKP 263
DE DR+L E +Q L +L T LPS +L
Sbjct: 385 DEADRMLEEGFQEELNEIL---------------TLLPSKRQTL---------------- 413
Query: 264 YPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESY-KLICESKLKP-- 320
+ SAT+ L L L P+ + + + + ++ LKP
Sbjct: 414 -------LFSATMNSRIKSLISLSLRKPVRIMINPPKQAAARLTQEFVRIRKRDHLKPAL 466
Query: 321 -LYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVR 374
YL+ L G+++ +VF + E H+L +L G L +K+ E G Q R
Sbjct: 467 LFYLIRKLDGTGQKRIVVFVARKEMAHKLRIIL---GLLGMKVGELHGSLTQEQR 518
>sp|Q2UNB7|RRP3_ASPOR ATP-dependent rRNA helicase rrp3 OS=Aspergillus oryzae (strain ATCC
42149 / RIB 40) GN=rrp3 PE=3 SV=1
Length = 472
Score = 115 bits (289), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 88/305 (28%), Positives = 132/305 (43%), Gaps = 60/305 (19%)
Query: 52 FPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTR 111
+ A+ E I L RDL + TGSGKT ++ALPI+Q L ++ LV+ PTR
Sbjct: 72 YKAPTAIQAEAIPLALQGRDLIGLAETGSGKTAAFALPILQALMDKPSSFF-GLVLAPTR 130
Query: 112 DLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQS 171
+LA Q+ F + + + + VG + + L K+P
Sbjct: 131 ELAYQISQAFEGLGSTISVRSTVLVGGMDMVSQSIALGKKPH------------------ 172
Query: 172 AVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNEN 231
I+VATPGRL+DH+ T+GF+L +L YLV+DE DRLL + L +L++
Sbjct: 173 ---IIVATPGRLLDHLENTKGFSLRNLKYLVMDEADRLLDMDFGPILDKILKV------- 222
Query: 232 RFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHP 291
LP RR + SAT++ L + L +P
Sbjct: 223 --------LPRE-------RRT----------------YLFSATMSSKVESLQRASLQNP 251
Query: 292 LFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTL 351
L + ++++ L+ + K K LYLV LL + CI+F +V T RL
Sbjct: 252 LRVAVSSSKFQTVSTLQQSYIFIPHKHKDLYLVYLLNEFVGQSCIIFCRTVHETQRLSFF 311
Query: 352 LNHFG 356
L G
Sbjct: 312 LRLLG 316
>sp|A3LSN3|DRS1_PICST ATP-dependent RNA helicase DRS1 OS=Scheffersomyces stipitis (strain
ATCC 58785 / CBS 6054 / NBRC 10063 / NRRL Y-11545)
GN=DRS1 PE=3 SV=3
Length = 741
Score = 115 bits (287), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 104/351 (29%), Positives = 152/351 (43%), Gaps = 85/351 (24%)
Query: 37 PRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSN 96
P LK L +G + P+Q A +I L RD+ + TGSGKT +Y +PI++ L
Sbjct: 232 PVLK-GLSQLGYTKPSPIQSA----SIPIALLGRDIVAGAVTGSGKTAAYMIPIIERLLY 286
Query: 97 R--AVRCLRALVVLPTRDLALQVKDVFAAIAPAVG-LSVGLAVGQSSIADEISELIKRPK 153
+ V R +V+ PTR+LA+QV DV I V L+ GLAVG ++ + +L RP
Sbjct: 287 KPSKVASTRVIVLTPTRELAIQVGDVGKKIGQFVNNLNFGLAVGGLNLRQQEQQLKSRP- 345
Query: 154 LEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREA 213
D+++ATPGRL+DHI + F+++ L LV+DE DR+L E
Sbjct: 346 --------------------DVVIATPGRLIDHIRNSPSFSIDSLEVLVIDEADRMLDEG 385
Query: 214 YQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLS 273
+Q L +L L P + ++ S
Sbjct: 386 FQVELTEILSLI-------------------------------------PKNKRQTLLFS 408
Query: 274 ATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICE-------SKLKPLYLVAL 326
AT+ L QL L P+ + P + + KL E LKP L L
Sbjct: 409 ATMNTKIQDLIQLSLQRPVRIMID------PPKTAATKLTQEFVRIRKRDHLKPALLFQL 462
Query: 327 LQSLG---EEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVR 374
L+ L + + +VF S ES H+L +L G L +K+ E G Q R
Sbjct: 463 LKKLDPAQQSRIVVFVSRKESAHKLRIVL---GLLGMKVSELHGSLTQEQR 510
>sp|Q03532|HAS1_YEAST ATP-dependent RNA helicase HAS1 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=HAS1 PE=1 SV=1
Length = 505
Score = 115 bits (287), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 103/378 (27%), Positives = 169/378 (44%), Gaps = 76/378 (20%)
Query: 2 EEAKKKSMPVLPWMRSPVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQE 61
E++ K P V FE+ L P LK A++ MG +++ VQ
Sbjct: 22 EKSTSKQNNAAPEGEQTTCVEKFEELKLSQ-----PTLK-AIEKMGFTTMTSVQA----R 71
Query: 62 TIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRA---LVVLPTRDLALQVK 118
TI P L RD+ + TGSGKTL++ +P ++ L + + +V+ PTR+LALQ+
Sbjct: 72 TIPPLLAGRDVLGAAKTGSGKTLAFLIPAIELLHSLKFKPRNGTGIIVITPTRELALQIF 131
Query: 119 DVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVA 178
V + + G+ +G ++ E +L+K V++L+A
Sbjct: 132 GVARELMEFHSQTFGIVIGGANRRQEAEKLMK---------------------GVNMLIA 170
Query: 179 TPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDAST 238
TPGRL+DH+ T+GF ++L L++DE DR+L ++ + ++++ NE+R S
Sbjct: 171 TPGRLLDHLQNTKGFVFKNLKALIIDEADRILEIGFEDEMRQIIKIL--PNEDRQS---- 224
Query: 239 FLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLH-HPLFLT-T 296
M+ SAT T LA++ L PLF+
Sbjct: 225 -------------------------------MLFSATQTTKVEDLARISLRPGPLFINVV 253
Query: 297 GETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFG 356
ET + LE ++C+S + L L + L+ ++K IVF SS S LLN+
Sbjct: 254 PETDNSTADGLEQGYVVCDSDKRFLLLFSFLKRNQKKKIIVFLSSCNSVKYYAELLNY-- 311
Query: 357 ELRIKIKEYSGLQRQSVR 374
+ + + E G Q+Q R
Sbjct: 312 -IDLPVLELHGKQKQQKR 328
>sp|A5DKW3|DRS1_PICGU ATP-dependent RNA helicase DRS1 OS=Meyerozyma guilliermondii
(strain ATCC 6260 / CBS 566 / DSM 6381 / JCM 1539 / NBRC
10279 / NRRL Y-324) GN=DRS1 PE=3 SV=2
Length = 705
Score = 114 bits (286), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 101/342 (29%), Positives = 152/342 (44%), Gaps = 81/342 (23%)
Query: 47 GISSL-FPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNR--AVRCLR 103
G+ +L + V A+ +I + +D+ + TGSGKT +Y +PI++ L + AV R
Sbjct: 212 GVGNLGYTVPSAIQAASIPIAMMGKDIVAGAVTGSGKTAAYLIPIIERLIYKPAAVSATR 271
Query: 104 ALVVLPTRDLALQVKDVFAAIAPAVG-LSVGLAVGQSSIADEISELIKRPKLEAGICYDP 162
+V+ PTR+LA+QV DV + V L+ GLAVG ++ + +L RP
Sbjct: 272 VIVLTPTRELAIQVCDVGKKLGQFVANLNFGLAVGGLNLRQQEQQLKSRP---------- 321
Query: 163 EDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVL 222
DI+VATPGRL+DHI + F++E+L LV+DE DR+L E +Q L +L
Sbjct: 322 -----------DIVVATPGRLIDHIRNSPSFSIENLEVLVMDEADRMLEEGFQVELTEIL 370
Query: 223 QLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNK 282
+L P + M+ SAT+
Sbjct: 371 ELI-------------------------------------PKHKRQTMLFSATMNTKIQD 393
Query: 283 LAQLDLHHPLFLTTGETRYKLPERLESYKLICE-------SKLKPLYLVALLQSLG---E 332
L QL L P+ + P + + KL+ E LKP L LL+ + +
Sbjct: 394 LIQLSLDKPVRIMVN------PPKQAASKLVQEFVRIRKREHLKPALLYHLLRLVDPQQQ 447
Query: 333 EKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVR 374
+ +VF S E HRL +L G L +K+ E G Q R
Sbjct: 448 NRIVVFVSRKEMAHRLRIVL---GLLGMKVSELHGSLTQEQR 486
>sp|P34580|DDX47_CAEEL Putative ATP-dependent RNA helicase T26G10.1 OS=Caenorhabditis
elegans GN=T26G10.1 PE=3 SV=1
Length = 489
Score = 114 bits (285), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 85/302 (28%), Positives = 138/302 (45%), Gaps = 67/302 (22%)
Query: 58 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSN--RAVRCLRALVVLPTRDLAL 115
+ Q + L +D+ + TGSGKT ++A+P++Q+L + +A CL V+ PTR+LA
Sbjct: 70 IQQAALPHALQGKDVIGLAETGSGKTGAFAIPVLQSLLDHPQAFFCL---VLTPTRELAF 126
Query: 116 QVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDI 175
Q+ F A+ +GL + VG +A + L +RP I
Sbjct: 127 QIGQQFEALGSGIGLIAAVIVGGVDMAAQAMALARRPH---------------------I 165
Query: 176 LVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSD 235
+VATPGRL+DH+ T+GF L+ L +L++DE DR+L ++ L +L
Sbjct: 166 IVATPGRLVDHLENTKGFNLKALKFLIMDEADRILNMDFEVELDKIL------------- 212
Query: 236 ASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVL-SATLTQDPNKLAQLDLHHPLFL 294
K PR + L SAT+T+ +KL + L P +
Sbjct: 213 --------------------------KVIPRERRTYLFSATMTKKVSKLERASLRDPARV 246
Query: 295 TTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNH 354
+ +RYK + L+ + + +K K YLV LL IVF ++ +T ++ +L
Sbjct: 247 SV-SSRYKTVDNLKQHYIFVPNKYKETYLVYLLNEHAGNSAIVFCATCATTMQIAVMLRQ 305
Query: 355 FG 356
G
Sbjct: 306 LG 307
>sp|Q7RY59|RRP3_NEUCR ATP-dependent rRNA helicase rrp-3 OS=Neurospora crassa (strain ATCC
24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987)
GN=rrp-3 PE=3 SV=1
Length = 515
Score = 114 bits (284), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 91/315 (28%), Positives = 138/315 (43%), Gaps = 64/315 (20%)
Query: 42 ALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRC 101
A + +G + P+Q +++I L RD+ + TGSGKT ++ALPI+Q L ++
Sbjct: 104 ACERLGYKNPTPIQ----EQSIPLALQNRDIIGIAETGSGKTAAFALPILQALLDKPA-P 158
Query: 102 LRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYD 161
L ALV+ PTR+LA Q+ F A+ + L L +G + + L K+P
Sbjct: 159 LFALVLAPTRELAAQIAQAFEALGSLISLRCALILGGMDMVTQAIALGKKPH-------- 210
Query: 162 PEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTV 221
++VATPGRL+DH+ T+GF+L + YLV+DE DRLL + L +
Sbjct: 211 -------------VIVATPGRLLDHLEKTKGFSLRSMQYLVMDEADRLLDMDFGPILEKI 257
Query: 222 LQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPN 281
L+ FLP RR + SAT++
Sbjct: 258 LK---------------FLPRE-------RRT----------------FLFSATMSSKVE 279
Query: 282 KLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSS 341
L + L PL ++ +Y L+S + K YLV L + I+FT +
Sbjct: 280 SLQRASLRDPLKVSVSSNKYATVSTLKSNYVFIPHMHKDTYLVYLCNEFAGQTIIIFTRT 339
Query: 342 VESTHRLCTLLNHFG 356
V T R+ LL G
Sbjct: 340 VLETQRIAILLRTLG 354
>sp|A3LS22|RRP3_PICST ATP-dependent rRNA helicase RRP3 OS=Scheffersomyces stipitis
(strain ATCC 58785 / CBS 6054 / NBRC 10063 / NRRL
Y-11545) GN=RRP3 PE=3 SV=3
Length = 484
Score = 112 bits (281), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 89/320 (27%), Positives = 142/320 (44%), Gaps = 68/320 (21%)
Query: 37 PRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSN 96
P L A+Q M S P+Q E I L +D+ + TGSGKT ++A+PI+Q+L
Sbjct: 80 PELLEAIQQMKFSKPTPIQ----SEAIPHALEGKDIIGLAQTGSGKTAAFAIPILQSLWE 135
Query: 97 RAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEA 156
A LV+ P R+LA Q+K+ F A+ +G+ VG + D+ +L+++P
Sbjct: 136 -AQTPYFGLVLAPARELAYQIKETFDALGSTMGVRTVCLVGGMDMMDQARDLMRKPH--- 191
Query: 157 GICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQA 216
I++ATPGR+MDH+ T+GF+L+ L Y V+DE D+LL +
Sbjct: 192 ------------------IIIATPGRIMDHLEHTKGFSLKMLKYFVMDEADKLLDLEFGP 233
Query: 217 WLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATL 276
L +L+ S +T+L SAT+
Sbjct: 234 VLDKILKQIPSKR-------TTYL-------------------------------FSATM 255
Query: 277 TQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCI 336
T KL + LH+P+ + ++Y+ + L ++ K YL+ LL + I
Sbjct: 256 TNKIEKLQRASLHNPVRVAVS-SKYQTADNLIQSMMLVSDGYKNTYLIHLLNEFVGKSII 314
Query: 337 VFTSSVESTHR---LCTLLN 353
+F + T R LC +L
Sbjct: 315 IFARTRAHTQRTSILCRILG 334
>sp|Q74Z73|HAS1_ASHGO ATP-dependent RNA helicase HAS1 OS=Ashbya gossypii (strain ATCC
10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=HAS1
PE=3 SV=2
Length = 504
Score = 112 bits (280), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 93/338 (27%), Positives = 150/338 (44%), Gaps = 70/338 (20%)
Query: 42 ALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRC 101
A+ MG + + VQ TI P + RD+ + TGSGKTL++ LP ++ L + +
Sbjct: 53 AIGKMGFTKMTQVQA----RTIPPLMAGRDVLGAAKTGSGKTLAFLLPAIEMLHSLKFKP 108
Query: 102 LRA---LVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGI 158
+V+ PTR+LALQ+ V + + G+ +G ++ E +L K
Sbjct: 109 RNGTGVIVITPTRELALQIFGVARELMEFHSQTFGIVIGGANRRQEAEKLAK-------- 160
Query: 159 CYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWL 218
V++L+ATPGRL+DH+ T+GF ++L LV+DE DR+L ++ +
Sbjct: 161 -------------GVNLLIATPGRLLDHLQNTKGFVFKNLKALVIDEADRILEIGFEDEM 207
Query: 219 PTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQ 278
++++ NE+R S M+ SAT T
Sbjct: 208 KQIIKIL--PNEDRQS-----------------------------------MLFSATQTT 230
Query: 279 DPNKLAQLDLH-HPLFLTT-GETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCI 336
LA++ L PLF+ E + LE ++C+S + L L L+ +K I
Sbjct: 231 KVEDLARISLRPGPLFINVDSEKETSTADGLEQGYVVCDSDKRFLLLFTFLKKFQNKKII 290
Query: 337 VFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVR 374
VF SS S LLN+ + + + E G Q+Q R
Sbjct: 291 VFLSSCNSVKYYAELLNY---IDLPVLELHGKQKQQKR 325
>sp|Q0UK12|RRP3_PHANO ATP-dependent rRNA helicase RRP3 OS=Phaeosphaeria nodorum (strain
SN15 / ATCC MYA-4574 / FGSC 10173) GN=RRP3 PE=3 SV=2
Length = 546
Score = 112 bits (279), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 91/316 (28%), Positives = 142/316 (44%), Gaps = 65/316 (20%)
Query: 42 ALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRC 101
A +N+G + P+Q E+I L +D+ + TGSGKT ++ LPI+Q L ++ +
Sbjct: 129 ACENLGYKTATPIQT----ESIPLALAGKDIIGLAETGSGKTAAFVLPILQALLDKP-QA 183
Query: 102 LRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYD 161
L++ PTR+LA Q+ A+ + + VG + + L KRP
Sbjct: 184 YFGLIMAPTRELAYQISQQVDALGSIINVKCATLVGGMDMVPQAIALSKRPH-------- 235
Query: 162 PEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTV 221
I+VA+PGRL+DH+ T+GF+L+HL YLV+DE DRLL + L +
Sbjct: 236 -------------IIVASPGRLLDHLENTKGFSLKHLKYLVLDEADRLLDLDFGDSLDKI 282
Query: 222 LQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPN 281
++ D D T+L SAT++
Sbjct: 283 FKVLPRD------DRHTYL-------------------------------FSATMSSKVE 305
Query: 282 KLAQLDLHHPLFLTTGETRYKLPER-LESYKLICESKLKPLYLVALLQSLGEEKCIVFTS 340
L + L +P+ ++ + +++ L+SY LI K K LYL+ LL I+FT
Sbjct: 306 SLQRAALKNPVRVSISSSSHQVVSTLLQSYMLIPH-KYKDLYLIHLLNDNIGHATILFTR 364
Query: 341 SVESTHRLCTLLNHFG 356
+V T RL LL G
Sbjct: 365 TVNETQRLAVLLRTLG 380
>sp|Q6CXB7|HAS1_KLULA ATP-dependent RNA helicase HAS1 OS=Kluyveromyces lactis (strain
ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL
Y-1140 / WM37) GN=HAS1 PE=3 SV=1
Length = 497
Score = 112 bits (279), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 94/338 (27%), Positives = 153/338 (45%), Gaps = 70/338 (20%)
Query: 42 ALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRC 101
A+ MG + + AV TI P L +D+ + TGSGKTL++ +P ++ L + +
Sbjct: 48 AIGKMGFTQM----TAVQTRTIPPLLAGKDVLGAAKTGSGKTLAFLIPAIEMLHSLKFKP 103
Query: 102 LRA---LVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGI 158
+V+ PTR+LALQ+ V + + G+ +G ++ E +L+K
Sbjct: 104 RNGTGVIVITPTRELALQIFGVARELMEFHSQTFGIVIGGANRRQEADKLMK-------- 155
Query: 159 CYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWL 218
V+IL+ATPGRL+DH+ T+GF ++L LV+DE DR+L ++ +
Sbjct: 156 -------------GVNILIATPGRLLDHLQNTKGFIFKNLKALVIDEADRILEIGFEDEM 202
Query: 219 PTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQ 278
++++ NE+R S M+ SAT T
Sbjct: 203 RQIIKIL--PNEDRQS-----------------------------------MLFSATQTT 225
Query: 279 DPNKLAQLDLH-HPLFLTT-GETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCI 336
LA++ L PLF+ E + LE ++CES + L L + L+ ++K I
Sbjct: 226 KVEDLARISLRPGPLFINVDSEKDTSTADGLEQGYVVCESDKRFLLLFSFLKRNQKKKVI 285
Query: 337 VFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVR 374
VF SS S LLN+ + + + E G Q+Q R
Sbjct: 286 VFLSSCNSVKYYAELLNY---IDLPVLELHGKQKQQKR 320
>sp|Q2H1Q8|RRP3_CHAGB ATP-dependent rRNA helicase RRP3 OS=Chaetomium globosum (strain
ATCC 6205 / CBS 148.51 / DSM 1962 / NBRC 6347 / NRRL
1970) GN=RRP3 PE=3 SV=1
Length = 493
Score = 112 bits (279), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 92/315 (29%), Positives = 140/315 (44%), Gaps = 64/315 (20%)
Query: 42 ALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRC 101
A + +G P+Q QE+I L +RD+ + TGSGKT ++ALPI+Q L ++ +
Sbjct: 79 ACKELGWKKPTPIQ----QESIPLALQDRDIIGLAETGSGKTGAFALPILQALLDKP-QP 133
Query: 102 LRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYD 161
L ALV+ PTR+LA Q+ F A+ + L L +G + + L K+P
Sbjct: 134 LFALVLAPTRELAAQIAQSFEALGSLISLRCALILGGLDMVQQAIALGKKPH-------- 185
Query: 162 PEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTV 221
++VATPGRL+DH+ T+GF+L +L YLV+DE DRLL + L +
Sbjct: 186 -------------VVVATPGRLLDHLEKTKGFSLRNLRYLVMDEADRLLDMDFGPILDKI 232
Query: 222 LQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPN 281
L+ FLP RR + SAT++
Sbjct: 233 LK---------------FLPRE-------RRT----------------FLFSATMSSKVE 254
Query: 282 KLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSS 341
L + L PL ++ ++Y+ L + K YL+ L + I+FT +
Sbjct: 255 SLQRACLRDPLKVSISSSKYQTVSTLVQNYVFIPHTHKDTYLIYLCNEFAGQTIIIFTRT 314
Query: 342 VESTHRLCTLLNHFG 356
V T R+ LL G
Sbjct: 315 VIETQRIAILLRTLG 329
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.137 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 135,300,353
Number of Sequences: 539616
Number of extensions: 5512043
Number of successful extensions: 17865
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 681
Number of HSP's successfully gapped in prelim test: 573
Number of HSP's that attempted gapping in prelim test: 14458
Number of HSP's gapped (non-prelim): 1602
length of query: 375
length of database: 191,569,459
effective HSP length: 119
effective length of query: 256
effective length of database: 127,355,155
effective search space: 32602919680
effective search space used: 32602919680
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 62 (28.5 bits)