Query 017196
Match_columns 375
No_of_seqs 135 out of 1708
Neff 9.1
Searched_HMMs 46136
Date Fri Mar 29 06:27:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017196.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017196hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0330 ATP-dependent RNA heli 100.0 1.1E-46 2.4E-51 339.9 22.1 283 18-374 57-339 (476)
2 KOG0331 ATP-dependent RNA heli 100.0 1.9E-46 4.1E-51 358.3 20.6 275 35-375 98-381 (519)
3 COG0513 SrmB Superfamily II DN 100.0 1.7E-44 3.7E-49 357.1 28.5 281 22-375 29-313 (513)
4 PTZ00110 helicase; Provisional 100.0 1.9E-43 4E-48 352.7 28.9 289 14-375 122-417 (545)
5 KOG0328 Predicted ATP-dependen 100.0 1.6E-44 3.4E-49 313.4 17.2 283 18-375 23-306 (400)
6 PRK04837 ATP-dependent RNA hel 100.0 8.8E-43 1.9E-47 340.0 29.7 285 19-375 5-295 (423)
7 KOG0338 ATP-dependent RNA heli 100.0 1.4E-43 3.1E-48 329.1 18.8 279 23-374 182-465 (691)
8 PRK04537 ATP-dependent RNA hel 100.0 2.8E-42 6.2E-47 345.4 28.8 287 18-375 5-297 (572)
9 PRK11776 ATP-dependent RNA hel 100.0 2.9E-42 6.2E-47 339.9 28.1 278 22-375 4-282 (460)
10 PRK10590 ATP-dependent RNA hel 100.0 4.3E-42 9.4E-47 337.6 27.8 279 23-375 2-285 (456)
11 KOG0346 RNA helicase [RNA proc 100.0 4.1E-43 8.8E-48 321.0 18.6 281 22-374 19-307 (569)
12 PRK11634 ATP-dependent RNA hel 100.0 1.5E-41 3.3E-46 342.2 28.8 280 21-375 5-285 (629)
13 PLN00206 DEAD-box ATP-dependen 100.0 2.5E-41 5.5E-46 336.3 28.2 286 16-375 115-408 (518)
14 KOG0345 ATP-dependent RNA heli 100.0 1.3E-41 2.8E-46 313.6 23.9 287 22-375 4-297 (567)
15 PRK11192 ATP-dependent RNA hel 100.0 8.6E-41 1.9E-45 327.3 29.0 279 23-375 2-285 (434)
16 KOG0343 RNA Helicase [RNA proc 100.0 1.4E-41 3E-46 318.4 21.3 283 21-374 68-354 (758)
17 PRK01297 ATP-dependent RNA hel 100.0 6.6E-40 1.4E-44 324.1 30.2 285 20-375 85-375 (475)
18 KOG0333 U5 snRNP-like RNA heli 100.0 1.9E-40 4.2E-45 309.2 21.5 311 16-375 239-557 (673)
19 KOG0342 ATP-dependent RNA heli 100.0 3.2E-40 7E-45 306.2 22.6 282 22-375 82-370 (543)
20 KOG0326 ATP-dependent RNA heli 100.0 1E-41 2.3E-46 300.5 11.7 284 20-374 78-361 (459)
21 KOG0340 ATP-dependent RNA heli 100.0 4.1E-40 8.9E-45 294.2 19.3 281 21-374 6-293 (442)
22 KOG0350 DEAD-box ATP-dependent 100.0 8.5E-40 1.9E-44 303.4 20.9 341 9-374 109-472 (620)
23 PTZ00424 helicase 45; Provisio 100.0 2.4E-38 5.2E-43 307.3 28.6 280 21-375 27-307 (401)
24 KOG0335 ATP-dependent RNA heli 100.0 2.3E-39 4.9E-44 304.9 19.1 291 15-375 67-377 (482)
25 KOG0339 ATP-dependent RNA heli 100.0 1.3E-38 2.8E-43 295.8 19.6 285 16-374 217-507 (731)
26 KOG0347 RNA helicase [RNA proc 100.0 5E-39 1.1E-43 301.2 11.5 290 16-374 175-502 (731)
27 KOG0348 ATP-dependent RNA heli 100.0 1.5E-37 3.2E-42 290.5 20.3 297 22-375 136-487 (708)
28 KOG0334 RNA helicase [RNA proc 100.0 2.2E-37 4.7E-42 310.4 15.7 288 15-375 358-653 (997)
29 KOG0341 DEAD-box protein abstr 100.0 3.1E-38 6.7E-43 284.9 8.2 285 16-375 164-461 (610)
30 KOG0327 Translation initiation 100.0 1.9E-36 4.2E-41 274.1 16.6 279 21-375 25-303 (397)
31 KOG0332 ATP-dependent RNA heli 100.0 1.1E-36 2.3E-41 273.9 14.6 281 20-375 88-370 (477)
32 KOG0336 ATP-dependent RNA heli 100.0 1.6E-36 3.4E-41 275.6 14.8 289 14-375 211-505 (629)
33 TIGR03817 DECH_helic helicase/ 100.0 1.5E-34 3.4E-39 296.8 25.6 274 35-375 21-319 (742)
34 KOG4284 DEAD box protein [Tran 100.0 7.2E-36 1.6E-40 284.3 13.7 281 18-374 21-311 (980)
35 KOG0337 ATP-dependent RNA heli 100.0 4.8E-35 1E-39 266.9 17.4 281 21-375 20-301 (529)
36 PRK02362 ski2-like helicase; P 100.0 1.8E-32 3.9E-37 283.8 24.1 274 23-375 2-319 (737)
37 PRK00254 ski2-like helicase; P 100.0 1.4E-31 3E-36 276.4 24.7 272 23-375 2-311 (720)
38 PRK13767 ATP-dependent helicas 100.0 4.1E-31 8.9E-36 276.5 24.4 277 35-375 18-330 (876)
39 TIGR02621 cas3_GSU0051 CRISPR- 100.0 1.1E-30 2.4E-35 264.6 23.9 267 39-375 4-310 (844)
40 COG1201 Lhr Lhr-like helicases 100.0 5.9E-31 1.3E-35 265.2 21.6 272 32-374 5-293 (814)
41 cd00268 DEADc DEAD-box helicas 100.0 2.1E-30 4.5E-35 228.2 21.9 196 35-294 6-202 (203)
42 TIGR00614 recQ_fam ATP-depende 100.0 1.4E-30 2.9E-35 257.0 22.3 254 45-375 6-266 (470)
43 PRK01172 ski2-like helicase; P 100.0 3.2E-30 7E-35 265.1 22.9 273 23-375 2-301 (674)
44 KOG0344 ATP-dependent RNA heli 100.0 5.8E-31 1.3E-35 250.0 14.5 295 16-375 126-428 (593)
45 KOG0329 ATP-dependent RNA heli 100.0 4.3E-31 9.4E-36 226.8 12.1 256 20-346 40-297 (387)
46 PRK11057 ATP-dependent DNA hel 100.0 3.4E-29 7.4E-34 253.5 25.3 262 35-375 9-276 (607)
47 PLN03137 ATP-dependent DNA hel 100.0 7.7E-29 1.7E-33 254.9 25.1 263 35-375 444-720 (1195)
48 TIGR01389 recQ ATP-dependent D 100.0 5.6E-29 1.2E-33 252.3 22.9 255 42-375 4-264 (591)
49 PRK09401 reverse gyrase; Revie 100.0 1.7E-28 3.6E-33 260.6 27.0 279 38-369 68-365 (1176)
50 COG1202 Superfamily II helicas 100.0 8.5E-29 1.8E-33 233.8 19.1 279 26-375 193-480 (830)
51 TIGR00580 mfd transcription-re 100.0 3.6E-28 7.8E-33 252.5 25.7 261 35-375 436-702 (926)
52 COG1204 Superfamily II helicas 100.0 3.4E-28 7.3E-33 247.9 21.3 251 35-353 16-274 (766)
53 TIGR01054 rgy reverse gyrase. 100.0 3.1E-27 6.7E-32 251.3 26.8 279 37-371 65-365 (1171)
54 PRK10689 transcription-repair 100.0 4.9E-27 1.1E-31 248.9 25.8 260 37-375 588-851 (1147)
55 PRK10917 ATP-dependent DNA hel 100.0 1.4E-26 3.1E-31 236.9 24.7 260 37-375 249-521 (681)
56 COG1205 Distinct helicase fami 100.0 1.7E-26 3.6E-31 238.6 24.8 279 35-375 55-354 (851)
57 PRK14701 reverse gyrase; Provi 100.0 1.2E-26 2.5E-31 251.6 24.5 281 38-369 67-367 (1638)
58 PRK09751 putative ATP-dependen 99.9 1.3E-26 2.8E-31 247.4 23.0 243 74-375 1-317 (1490)
59 TIGR00643 recG ATP-dependent D 99.9 4.5E-26 9.7E-31 231.8 24.6 263 37-375 223-498 (630)
60 PF00270 DEAD: DEAD/DEAH box h 99.9 4E-26 8.7E-31 194.7 17.8 149 52-227 1-149 (169)
61 TIGR01587 cas3_core CRISPR-ass 99.9 8E-26 1.7E-30 216.2 19.5 249 71-374 1-263 (358)
62 TIGR03158 cas3_cyano CRISPR-as 99.9 1.2E-24 2.6E-29 207.0 25.7 268 54-374 1-313 (357)
63 KOG0952 DNA/RNA helicase MER3/ 99.9 8.6E-26 1.9E-30 225.9 17.2 266 45-374 105-411 (1230)
64 PHA02558 uvsW UvsW helicase; P 99.9 3.4E-25 7.3E-30 219.9 19.2 243 49-375 113-384 (501)
65 KOG0349 Putative DEAD-box RNA 99.9 1.7E-25 3.8E-30 205.1 14.5 219 102-375 287-548 (725)
66 PRK11664 ATP-dependent RNA hel 99.9 3.3E-24 7.2E-29 221.2 21.6 235 61-374 12-254 (812)
67 TIGR01970 DEAH_box_HrpB ATP-de 99.9 7.2E-24 1.6E-28 218.4 22.2 234 62-374 10-251 (819)
68 PHA02653 RNA helicase NPH-II; 99.9 4E-24 8.6E-29 215.5 19.3 250 50-373 160-435 (675)
69 COG0514 RecQ Superfamily II DN 99.9 7.2E-24 1.6E-28 207.1 17.7 257 41-375 7-270 (590)
70 PRK09694 helicase Cas3; Provis 99.9 1.1E-22 2.4E-27 209.8 23.6 283 48-374 284-602 (878)
71 PRK12898 secA preprotein trans 99.9 6.6E-22 1.4E-26 196.8 19.8 290 45-374 99-512 (656)
72 TIGR00603 rad25 DNA repair hel 99.9 3.1E-21 6.8E-26 194.1 19.7 239 50-375 255-531 (732)
73 KOG0951 RNA helicase BRR2, DEA 99.9 2E-21 4.4E-26 197.2 17.7 278 32-375 293-623 (1674)
74 PRK13766 Hef nuclease; Provisi 99.9 2.2E-20 4.7E-25 195.6 25.0 133 49-212 14-146 (773)
75 TIGR03714 secA2 accessory Sec 99.9 1.6E-20 3.4E-25 189.2 19.2 293 46-374 67-463 (762)
76 PRK09200 preprotein translocas 99.9 4.4E-20 9.5E-25 187.6 20.5 131 46-209 75-211 (790)
77 COG1111 MPH1 ERCC4-like helica 99.8 1.1E-19 2.3E-24 171.1 20.7 133 48-211 13-145 (542)
78 COG1061 SSL2 DNA or RNA helica 99.8 7.9E-20 1.7E-24 178.4 17.3 244 49-375 35-322 (442)
79 smart00487 DEXDc DEAD-like hel 99.8 3.6E-19 7.8E-24 154.7 19.2 188 45-298 3-192 (201)
80 PRK13104 secA preprotein trans 99.8 2.1E-19 4.6E-24 182.5 19.1 131 46-210 79-215 (896)
81 COG1200 RecG RecG-like helicas 99.8 4.7E-19 1E-23 173.3 19.8 263 35-375 247-523 (677)
82 KOG0351 ATP-dependent DNA heli 99.8 1E-19 2.2E-24 187.6 15.8 261 39-375 252-525 (941)
83 TIGR00963 secA preprotein tran 99.8 5.7E-19 1.2E-23 177.0 20.4 132 46-211 53-190 (745)
84 PRK05580 primosome assembly pr 99.8 5E-18 1.1E-22 173.6 23.1 128 50-210 144-271 (679)
85 KOG0352 ATP-dependent DNA heli 99.8 2.5E-19 5.3E-24 164.7 11.4 263 37-374 5-294 (641)
86 PRK11131 ATP-dependent RNA hel 99.8 4.3E-18 9.2E-23 179.8 21.6 232 62-374 82-328 (1294)
87 PRK12899 secA preprotein trans 99.8 9E-19 1.9E-23 177.8 15.8 144 35-210 69-228 (970)
88 KOG0353 ATP-dependent DNA heli 99.8 3E-18 6.4E-23 155.6 16.1 265 35-375 78-357 (695)
89 PRK11448 hsdR type I restricti 99.8 7.6E-18 1.6E-22 178.8 19.4 136 50-210 413-553 (1123)
90 COG1197 Mfd Transcription-repa 99.8 5.6E-17 1.2E-21 167.1 22.9 259 35-373 579-843 (1139)
91 COG4581 Superfamily II RNA hel 99.8 2E-17 4.3E-22 170.1 18.9 181 41-298 111-294 (1041)
92 TIGR01967 DEAH_box_HrpA ATP-de 99.8 9.5E-17 2.1E-21 170.2 22.4 250 46-374 60-321 (1283)
93 PRK12904 preprotein translocas 99.7 4.5E-17 9.8E-22 165.5 17.6 130 46-209 78-213 (830)
94 KOG0950 DNA polymerase theta/e 99.7 2.4E-17 5.2E-22 165.1 12.0 198 18-278 190-389 (1008)
95 COG1203 CRISPR-associated heli 99.7 1.2E-16 2.7E-21 164.9 15.7 278 49-375 194-480 (733)
96 TIGR00595 priA primosomal prot 99.7 7.4E-16 1.6E-20 152.5 20.4 106 73-210 1-106 (505)
97 PRK13107 preprotein translocas 99.7 1.7E-16 3.7E-21 161.1 15.8 131 46-210 79-215 (908)
98 KOG0354 DEAD-box like helicase 99.7 7.8E-17 1.7E-21 160.0 13.0 148 47-224 59-207 (746)
99 COG1110 Reverse gyrase [DNA re 99.7 1.4E-15 3E-20 153.4 21.5 286 38-368 70-371 (1187)
100 cd00046 DEXDc DEAD-like helica 99.7 9.9E-16 2.1E-20 125.3 17.0 120 70-214 1-120 (144)
101 PF04851 ResIII: Type III rest 99.7 1.1E-16 2.5E-21 137.9 11.4 150 50-216 3-166 (184)
102 COG4096 HsdR Type I site-speci 99.7 4.3E-16 9.2E-21 154.8 16.4 143 49-227 164-311 (875)
103 PRK04914 ATP-dependent helicas 99.7 7.6E-16 1.6E-20 160.5 18.9 134 50-210 152-285 (956)
104 KOG0947 Cytoplasmic exosomal R 99.7 1.4E-15 3.1E-20 151.8 16.6 157 44-280 292-448 (1248)
105 COG4098 comFA Superfamily II D 99.7 5.3E-15 1.2E-19 133.2 17.8 237 50-370 97-342 (441)
106 PLN03142 Probable chromatin-re 99.6 5.2E-15 1.1E-19 154.9 17.1 138 50-212 169-306 (1033)
107 KOG0948 Nuclear exosomal RNA h 99.6 2E-15 4.4E-20 147.4 13.1 225 46-354 126-405 (1041)
108 TIGR00348 hsdR type I site-spe 99.6 3.1E-14 6.7E-19 145.8 18.9 137 50-215 238-383 (667)
109 KOG1123 RNA polymerase II tran 99.5 3.2E-14 6.9E-19 133.7 10.8 241 49-374 301-577 (776)
110 TIGR01407 dinG_rel DnaQ family 99.5 1.8E-13 3.8E-18 144.3 17.2 105 32-141 228-335 (850)
111 KOG0385 Chromatin remodeling c 99.5 4.5E-13 9.8E-18 131.7 16.6 290 50-375 167-527 (971)
112 TIGR03117 cas_csf4 CRISPR-asso 99.5 3E-13 6.5E-18 135.5 15.2 86 55-142 2-90 (636)
113 PRK12906 secA preprotein trans 99.5 2.6E-13 5.7E-18 137.7 14.7 130 46-209 77-212 (796)
114 PRK07246 bifunctional ATP-depe 99.4 2.2E-12 4.7E-17 134.6 15.5 158 46-211 242-450 (820)
115 KOG0387 Transcription-coupled 99.4 3.6E-13 7.9E-18 132.8 9.1 303 49-374 204-586 (923)
116 smart00488 DEXDc2 DEAD-like he 99.4 2.2E-12 4.7E-17 119.2 13.2 79 46-125 5-85 (289)
117 smart00489 DEXDc3 DEAD-like he 99.4 2.2E-12 4.7E-17 119.2 13.2 79 46-125 5-85 (289)
118 COG1643 HrpA HrpA-like helicas 99.4 2.2E-11 4.9E-16 125.0 21.7 235 62-373 58-301 (845)
119 KOG0951 RNA helicase BRR2, DEA 99.3 1.5E-11 3.3E-16 126.4 14.0 224 50-353 1143-1380(1674)
120 PF07652 Flavi_DEAD: Flaviviru 99.3 1.1E-11 2.4E-16 100.0 8.8 106 67-209 2-107 (148)
121 PF00176 SNF2_N: SNF2 family N 99.3 9.6E-12 2.1E-16 115.7 8.7 131 54-210 1-147 (299)
122 COG1198 PriA Primosomal protei 99.3 1E-10 2.3E-15 118.4 15.8 128 49-208 197-324 (730)
123 PRK08074 bifunctional ATP-depe 99.3 6.1E-11 1.3E-15 125.8 14.2 89 47-140 255-347 (928)
124 PRK12326 preprotein translocas 99.2 6.3E-10 1.4E-14 111.4 19.4 130 46-209 75-210 (764)
125 COG0556 UvrB Helicase subunit 99.2 4.2E-10 9E-15 107.4 16.9 71 50-127 12-83 (663)
126 KOG0922 DEAH-box RNA helicase 99.2 5.3E-10 1.1E-14 109.4 16.9 234 62-373 59-304 (674)
127 KOG0926 DEAH-box RNA helicase 99.2 1.1E-09 2.3E-14 108.7 16.1 227 63-355 265-504 (1172)
128 PRK11747 dinG ATP-dependent DN 99.1 9.2E-10 2E-14 113.5 16.0 88 47-139 23-119 (697)
129 KOG0920 ATP-dependent RNA heli 99.1 1.4E-09 3.1E-14 111.7 16.4 247 51-372 174-457 (924)
130 KOG0389 SNF2 family DNA-depend 99.1 1.5E-10 3.3E-15 114.5 8.5 144 47-213 397-540 (941)
131 KOG0949 Predicted helicase, DE 99.1 2.8E-10 6.2E-15 114.8 9.5 147 50-225 511-660 (1330)
132 PRK12902 secA preprotein trans 99.1 3.3E-09 7.2E-14 108.2 16.8 130 46-209 82-217 (939)
133 PRK13103 secA preprotein trans 99.1 4.7E-10 1E-14 114.8 10.2 130 46-209 79-214 (913)
134 CHL00122 secA preprotein trans 99.1 4.2E-09 9.1E-14 107.5 16.5 130 46-209 73-208 (870)
135 TIGR00604 rad3 DNA repair heli 99.1 1.3E-09 2.9E-14 112.9 12.5 79 46-125 6-84 (705)
136 COG4889 Predicted helicase [Ge 99.0 1.3E-09 2.8E-14 109.1 10.5 154 47-209 158-316 (1518)
137 TIGR02562 cas3_yersinia CRISPR 99.0 3.2E-09 7E-14 109.9 13.2 177 49-228 407-623 (1110)
138 KOG0384 Chromodomain-helicase 99.0 6.1E-10 1.3E-14 114.9 7.7 144 49-213 369-513 (1373)
139 KOG0390 DNA repair protein, SN 99.0 2.3E-08 5.1E-13 101.2 16.6 145 49-213 237-392 (776)
140 KOG1000 Chromatin remodeling p 99.0 1.1E-07 2.3E-12 90.3 19.6 128 48-212 196-323 (689)
141 COG1199 DinG Rad3-related DNA 98.9 1.1E-08 2.4E-13 105.7 12.2 77 45-124 10-86 (654)
142 KOG0923 mRNA splicing factor A 98.9 4.6E-08 1E-12 95.6 15.2 234 62-373 273-520 (902)
143 TIGR00631 uvrb excinuclease AB 98.9 2.8E-07 6E-12 94.1 21.3 71 50-127 9-80 (655)
144 PRK12900 secA preprotein trans 98.9 2.1E-08 4.5E-13 103.5 12.1 127 50-209 138-270 (1025)
145 PF02399 Herpes_ori_bp: Origin 98.8 2.5E-07 5.3E-12 93.8 19.1 222 72-372 52-319 (824)
146 PRK14873 primosome assembly pr 98.8 5.4E-08 1.2E-12 99.1 13.8 104 73-207 164-267 (665)
147 PRK12903 secA preprotein trans 98.8 6.9E-08 1.5E-12 98.4 14.3 130 46-209 75-210 (925)
148 PRK15483 type III restriction- 98.8 4.6E-08 9.9E-13 101.6 12.8 51 70-122 60-110 (986)
149 KOG0391 SNF2 family DNA-depend 98.8 1.3E-08 2.8E-13 104.5 8.5 148 50-224 615-763 (1958)
150 PF07517 SecA_DEAD: SecA DEAD- 98.8 2.1E-07 4.5E-12 84.2 15.3 132 45-210 73-210 (266)
151 KOG0924 mRNA splicing factor A 98.8 9.6E-08 2.1E-12 93.7 13.8 239 50-372 356-610 (1042)
152 KOG0952 DNA/RNA helicase MER3/ 98.7 4.6E-09 9.9E-14 107.2 0.4 142 50-221 927-1069(1230)
153 KOG0392 SNF2 family DNA-depend 98.7 7.7E-08 1.7E-12 99.6 9.1 149 50-227 975-1128(1549)
154 KOG0925 mRNA splicing factor A 98.6 4E-06 8.6E-11 79.7 18.5 260 22-367 25-294 (699)
155 PF06862 DUF1253: Protein of u 98.6 4.6E-06 1E-10 80.3 19.2 245 99-370 35-335 (442)
156 PF13086 AAA_11: AAA domain; P 98.6 1.4E-07 3.1E-12 84.1 8.3 85 50-139 1-95 (236)
157 KOG1002 Nucleotide excision re 98.5 4.4E-07 9.4E-12 86.2 9.5 131 49-209 183-328 (791)
158 KOG0386 Chromatin remodeling c 98.5 1.7E-07 3.7E-12 95.5 6.9 135 49-210 393-528 (1157)
159 COG0610 Type I site-specific r 98.5 6.4E-07 1.4E-11 95.2 10.6 129 68-226 272-402 (962)
160 KOG4150 Predicted ATP-dependen 98.5 7.1E-07 1.5E-11 86.1 9.3 271 40-375 276-573 (1034)
161 KOG4439 RNA polymerase II tran 98.4 3.8E-07 8.3E-12 89.9 5.6 137 50-209 325-475 (901)
162 PRK05298 excinuclease ABC subu 98.4 2.3E-05 5E-10 80.6 18.9 73 47-127 10-83 (652)
163 KOG0388 SNF2 family DNA-depend 98.4 7.6E-07 1.6E-11 87.9 7.3 144 50-213 567-711 (1185)
164 PF13872 AAA_34: P-loop contai 98.3 1.3E-05 2.8E-10 73.0 11.9 134 50-212 37-187 (303)
165 KOG1802 RNA helicase nonsense 98.3 8E-06 1.7E-10 80.4 11.1 153 41-209 401-580 (935)
166 PF02562 PhoH: PhoH-like prote 98.2 3.8E-06 8.3E-11 73.1 6.9 60 48-113 2-61 (205)
167 PF13604 AAA_30: AAA domain; P 98.1 1.3E-05 2.8E-10 69.9 8.4 64 50-120 1-65 (196)
168 PF12340 DUF3638: Protein of u 98.1 4.8E-05 1E-09 66.9 11.7 149 46-213 20-188 (229)
169 KOG1805 DNA replication helica 98.0 4.2E-05 9E-10 78.5 11.2 152 35-210 658-809 (1100)
170 PRK12901 secA preprotein trans 98.0 1.3E-05 2.8E-10 83.5 7.5 128 50-209 169-302 (1112)
171 KOG2340 Uncharacterized conser 98.0 7.8E-05 1.7E-09 71.9 12.0 287 49-356 215-576 (698)
172 TIGR00376 DNA helicase, putati 98.0 3.9E-05 8.5E-10 78.5 10.5 79 49-138 156-234 (637)
173 KOG1132 Helicase of the DEAD s 98.0 4.5E-05 9.7E-10 77.6 10.5 90 46-138 18-145 (945)
174 KOG1803 DNA helicase [Replicat 98.0 3E-05 6.4E-10 76.0 8.4 66 49-121 184-249 (649)
175 PRK10536 hypothetical protein; 97.9 0.00021 4.6E-09 64.1 11.7 63 44-112 53-115 (262)
176 PF09848 DUF2075: Uncharacteri 97.9 6.2E-05 1.3E-09 71.9 8.8 96 71-212 3-98 (352)
177 KOG1015 Transcription regulato 97.8 0.00015 3.3E-09 74.2 11.5 124 68-212 695-836 (1567)
178 COG0553 HepA Superfamily II DN 97.8 7.3E-05 1.6E-09 79.9 8.4 140 49-210 337-485 (866)
179 PF13245 AAA_19: Part of AAA d 97.7 0.00014 3E-09 52.9 7.0 53 69-121 10-62 (76)
180 PRK10875 recD exonuclease V su 97.7 0.00056 1.2E-08 69.6 13.0 68 52-124 154-222 (615)
181 KOG0953 Mitochondrial RNA heli 97.6 9.4E-05 2E-09 71.7 5.8 98 72-213 194-291 (700)
182 TIGR01447 recD exodeoxyribonuc 97.6 0.00078 1.7E-08 68.3 12.3 66 53-123 148-215 (586)
183 TIGR01448 recD_rel helicase, p 97.6 0.001 2.2E-08 69.3 13.5 67 44-117 318-384 (720)
184 TIGR02768 TraA_Ti Ti-type conj 97.6 0.0017 3.6E-08 68.0 14.9 61 50-117 352-412 (744)
185 PRK13889 conjugal transfer rel 97.5 0.0015 3.2E-08 69.7 13.8 65 45-117 342-406 (988)
186 PF00580 UvrD-helicase: UvrD/R 97.4 0.00041 8.9E-09 64.7 7.7 70 51-126 1-70 (315)
187 PRK06526 transposase; Provisio 97.4 0.0019 4E-08 58.7 11.5 50 22-88 68-117 (254)
188 COG3587 Restriction endonuclea 97.4 0.00049 1.1E-08 70.1 8.2 48 70-119 75-122 (985)
189 PRK12723 flagellar biosynthesi 97.3 0.0028 6E-08 60.9 12.1 22 69-90 174-195 (388)
190 PF13401 AAA_22: AAA domain; P 97.3 0.0027 5.9E-08 51.0 10.4 19 68-86 3-21 (131)
191 PRK13826 Dtr system oriT relax 97.2 0.0081 1.7E-07 64.7 15.1 75 35-117 367-441 (1102)
192 KOG0989 Replication factor C, 97.2 0.0021 4.6E-08 58.5 9.0 33 194-227 126-158 (346)
193 COG0653 SecA Preprotein transl 97.2 0.0011 2.4E-08 68.2 7.6 130 46-209 77-212 (822)
194 PF00308 Bac_DnaA: Bacterial d 97.2 0.0058 1.3E-07 54.2 11.4 48 71-121 36-83 (219)
195 PRK08181 transposase; Validate 97.1 0.0051 1.1E-07 56.2 11.0 46 68-118 105-150 (269)
196 COG3421 Uncharacterized protei 97.1 0.0034 7.4E-08 61.8 9.7 41 170-210 79-125 (812)
197 PRK11054 helD DNA helicase IV; 97.0 0.0038 8.2E-08 64.6 10.1 82 49-136 195-276 (684)
198 PF05970 PIF1: PIF1-like helic 97.0 0.0027 5.8E-08 60.9 8.3 62 50-115 1-64 (364)
199 TIGR01075 uvrD DNA helicase II 97.0 0.003 6.6E-08 66.1 9.0 72 49-126 3-74 (715)
200 PRK04296 thymidine kinase; Pro 96.9 0.0025 5.5E-08 55.2 6.7 37 70-110 3-39 (190)
201 PRK11773 uvrD DNA-dependent he 96.8 0.0048 1E-07 64.6 9.1 72 49-126 8-79 (721)
202 PF14617 CMS1: U3-containing 9 96.8 0.0034 7.4E-08 56.4 6.6 85 100-207 125-211 (252)
203 PRK10919 ATP-dependent DNA hel 96.8 0.0041 8.9E-08 64.5 7.9 71 50-126 2-72 (672)
204 KOG1001 Helicase-like transcri 96.8 0.0052 1.1E-07 63.0 8.4 113 70-213 153-270 (674)
205 cd00079 HELICc Helicase superf 96.7 0.0038 8.3E-08 49.8 6.0 54 318-374 12-67 (131)
206 PRK14956 DNA polymerase III su 96.7 0.011 2.3E-07 58.2 9.9 25 71-96 42-66 (484)
207 PF03354 Terminase_1: Phage Te 96.7 0.0053 1.1E-07 61.1 7.9 75 53-127 1-80 (477)
208 PF00448 SRP54: SRP54-type pro 96.7 0.015 3.2E-07 50.6 9.8 23 71-93 3-25 (196)
209 cd00009 AAA The AAA+ (ATPases 96.7 0.017 3.7E-07 46.6 9.8 18 68-85 18-35 (151)
210 COG1484 DnaC DNA replication p 96.7 0.012 2.7E-07 53.4 9.3 50 68-122 104-153 (254)
211 KOG1133 Helicase of the DEAD s 96.6 0.0022 4.7E-08 64.1 4.1 50 46-96 12-61 (821)
212 PTZ00112 origin recognition co 96.6 0.031 6.8E-07 58.3 12.3 24 71-95 782-806 (1164)
213 PRK14974 cell division protein 96.6 0.04 8.6E-07 52.0 12.3 50 70-123 141-193 (336)
214 TIGR02881 spore_V_K stage V sp 96.5 0.025 5.5E-07 51.6 10.7 21 68-88 41-61 (261)
215 KOG1016 Predicted DNA helicase 96.5 0.032 6.9E-07 56.7 11.5 106 35-145 247-364 (1387)
216 PRK06921 hypothetical protein; 96.5 0.044 9.6E-07 50.1 11.7 45 68-116 116-160 (266)
217 PRK08727 hypothetical protein; 96.5 0.019 4.2E-07 51.4 9.3 35 70-108 42-76 (233)
218 COG1875 NYN ribonuclease and A 96.5 0.014 3.1E-07 54.5 8.4 66 44-113 222-288 (436)
219 PRK12377 putative replication 96.4 0.044 9.5E-07 49.5 11.4 47 69-120 101-147 (248)
220 TIGR01074 rep ATP-dependent DN 96.4 0.01 2.2E-07 61.7 8.2 70 51-126 2-71 (664)
221 CHL00181 cbbX CbbX; Provisiona 96.4 0.029 6.3E-07 51.9 10.3 21 68-88 58-78 (287)
222 PRK00411 cdc6 cell division co 96.4 0.022 4.7E-07 55.2 9.9 27 69-96 55-81 (394)
223 smart00382 AAA ATPases associa 96.4 0.0072 1.6E-07 48.4 5.4 40 69-112 2-41 (148)
224 PF00004 AAA: ATPase family as 96.3 0.1 2.2E-06 41.5 12.1 31 197-227 58-95 (132)
225 cd01124 KaiC KaiC is a circadi 96.3 0.067 1.4E-06 45.8 11.6 49 72-125 2-50 (187)
226 KOG0298 DEAD box-containing he 96.3 0.011 2.3E-07 63.1 7.4 101 66-189 371-485 (1394)
227 COG1435 Tdk Thymidine kinase [ 96.3 0.033 7.3E-07 47.7 9.1 107 69-226 4-110 (201)
228 PRK08769 DNA polymerase III su 96.3 0.039 8.5E-07 51.7 10.5 48 49-97 3-53 (319)
229 PF13177 DNA_pol3_delta2: DNA 96.2 0.039 8.4E-07 46.4 9.3 27 70-97 20-46 (162)
230 PRK06893 DNA replication initi 96.2 0.033 7.2E-07 49.7 9.4 30 196-225 90-120 (229)
231 COG1444 Predicted P-loop ATPas 96.2 0.06 1.3E-06 55.5 12.1 82 43-129 207-289 (758)
232 PHA02533 17 large terminase pr 96.2 0.12 2.7E-06 52.0 14.2 71 50-126 59-129 (534)
233 PRK06645 DNA polymerase III su 96.2 0.017 3.7E-07 57.6 8.0 20 70-89 44-63 (507)
234 cd01122 GP4d_helicase GP4d_hel 96.2 0.068 1.5E-06 48.9 11.5 78 38-123 3-80 (271)
235 PRK00149 dnaA chromosomal repl 96.2 0.057 1.2E-06 53.4 11.7 45 70-117 149-193 (450)
236 PRK11823 DNA repair protein Ra 96.2 0.089 1.9E-06 51.8 12.9 62 59-125 69-131 (446)
237 PRK05642 DNA replication initi 96.2 0.049 1.1E-06 48.8 10.2 31 197-227 97-128 (234)
238 TIGR02760 TraI_TIGR conjugativ 96.2 0.28 6.2E-06 56.8 18.3 65 50-120 429-493 (1960)
239 TIGR02880 cbbX_cfxQ probable R 96.1 0.11 2.3E-06 48.1 12.2 19 68-86 57-75 (284)
240 PRK07952 DNA replication prote 96.1 0.056 1.2E-06 48.7 10.0 41 70-115 100-140 (244)
241 PRK07003 DNA polymerase III su 96.1 0.061 1.3E-06 55.6 11.3 24 196-219 118-141 (830)
242 KOG0733 Nuclear AAA ATPase (VC 96.1 0.037 8.1E-07 55.1 9.3 58 19-86 505-562 (802)
243 PHA03333 putative ATPase subun 96.1 0.088 1.9E-06 53.6 12.1 73 51-127 170-242 (752)
244 PRK14964 DNA polymerase III su 96.0 0.043 9.3E-07 54.4 9.9 21 70-90 36-56 (491)
245 PRK07764 DNA polymerase III su 96.0 0.04 8.8E-07 58.1 10.2 26 70-96 38-63 (824)
246 PRK06835 DNA replication prote 96.0 0.083 1.8E-06 49.8 11.2 45 69-118 183-227 (329)
247 COG1419 FlhF Flagellar GTP-bin 96.0 0.029 6.2E-07 53.5 8.0 76 68-146 202-277 (407)
248 TIGR01547 phage_term_2 phage t 96.0 0.048 1E-06 53.0 9.9 59 71-130 3-62 (396)
249 PRK12323 DNA polymerase III su 96.0 0.058 1.3E-06 54.9 10.6 23 196-218 123-145 (700)
250 PRK08903 DnaA regulatory inact 96.0 0.12 2.7E-06 45.8 11.9 19 68-86 41-59 (227)
251 TIGR01073 pcrA ATP-dependent D 96.0 0.038 8.1E-07 58.1 9.8 72 49-126 3-74 (726)
252 PF05127 Helicase_RecD: Helica 96.0 0.0027 5.9E-08 53.9 1.0 51 73-126 1-51 (177)
253 PRK14722 flhF flagellar biosyn 95.9 0.074 1.6E-06 50.9 10.7 71 68-142 136-207 (374)
254 cd01120 RecA-like_NTPases RecA 95.9 0.13 2.8E-06 42.4 11.2 38 72-113 2-39 (165)
255 PRK08084 DNA replication initi 95.9 0.078 1.7E-06 47.5 10.3 19 68-86 44-62 (235)
256 PRK14087 dnaA chromosomal repl 95.9 0.082 1.8E-06 52.2 11.1 49 70-121 142-190 (450)
257 PLN03025 replication factor C 95.9 0.087 1.9E-06 49.6 10.8 18 70-87 35-52 (319)
258 PRK08116 hypothetical protein; 95.9 0.12 2.5E-06 47.4 11.3 45 70-119 115-159 (268)
259 TIGR00362 DnaA chromosomal rep 95.9 0.099 2.1E-06 50.9 11.5 42 71-115 138-179 (405)
260 PRK05973 replicative DNA helic 95.9 0.22 4.7E-06 44.6 12.7 85 35-124 25-114 (237)
261 PRK11889 flhF flagellar biosyn 95.8 0.12 2.7E-06 49.5 11.3 22 70-91 242-263 (436)
262 PRK14086 dnaA chromosomal repl 95.7 0.14 3E-06 52.0 12.1 47 71-120 316-362 (617)
263 PRK07994 DNA polymerase III su 95.7 0.039 8.5E-07 56.4 8.3 24 196-219 118-141 (647)
264 PRK12402 replication factor C 95.7 0.074 1.6E-06 50.2 9.8 16 71-86 38-53 (337)
265 TIGR03420 DnaA_homol_Hda DnaA 95.7 0.1 2.3E-06 46.1 10.0 19 68-86 37-55 (226)
266 PRK13894 conjugal transfer ATP 95.6 0.036 7.7E-07 52.0 7.1 66 41-113 125-190 (319)
267 PRK14958 DNA polymerase III su 95.6 0.064 1.4E-06 53.7 9.3 22 196-217 118-139 (509)
268 PRK13833 conjugal transfer pro 95.6 0.042 9.1E-07 51.5 7.5 65 42-113 122-186 (323)
269 KOG0738 AAA+-type ATPase [Post 95.6 0.065 1.4E-06 50.6 8.4 16 70-85 246-261 (491)
270 PF05621 TniB: Bacterial TniB 95.6 0.051 1.1E-06 50.0 7.7 48 70-122 62-117 (302)
271 PHA03368 DNA packaging termina 95.5 0.19 4.1E-06 51.1 12.0 58 68-127 253-310 (738)
272 PRK09111 DNA polymerase III su 95.5 0.087 1.9E-06 53.7 10.0 21 70-90 47-67 (598)
273 PRK08699 DNA polymerase III su 95.5 0.25 5.3E-06 46.6 12.3 45 51-96 2-47 (325)
274 TIGR02782 TrbB_P P-type conjug 95.5 0.062 1.3E-06 50.0 8.1 66 41-113 109-174 (299)
275 PRK14088 dnaA chromosomal repl 95.5 0.16 3.5E-06 50.0 11.3 38 70-109 131-168 (440)
276 PRK07993 DNA polymerase III su 95.5 0.12 2.5E-06 49.0 9.9 46 50-96 2-50 (334)
277 TIGR02928 orc1/cdc6 family rep 95.4 0.034 7.4E-07 53.2 6.4 26 69-95 40-65 (365)
278 PRK14960 DNA polymerase III su 95.4 0.11 2.3E-06 53.1 9.9 20 70-89 38-57 (702)
279 PHA02544 44 clamp loader, smal 95.4 0.16 3.5E-06 47.5 10.8 28 197-224 100-127 (316)
280 PF01695 IstB_IS21: IstB-like 95.4 0.043 9.4E-07 46.9 6.2 46 67-117 45-90 (178)
281 KOG0991 Replication factor C, 95.4 0.044 9.5E-07 48.2 6.2 34 193-227 109-142 (333)
282 PRK11331 5-methylcytosine-spec 95.3 0.2 4.2E-06 49.0 11.2 28 60-87 185-212 (459)
283 TIGR03877 thermo_KaiC_1 KaiC d 95.3 0.2 4.4E-06 44.9 10.8 57 65-126 17-73 (237)
284 PRK14712 conjugal transfer nic 95.3 0.12 2.6E-06 57.8 10.7 64 50-117 835-900 (1623)
285 TIGR03881 KaiC_arch_4 KaiC dom 95.3 0.26 5.7E-06 43.8 11.2 62 59-125 9-71 (229)
286 COG4962 CpaF Flp pilus assembl 95.2 0.08 1.7E-06 49.4 7.8 61 47-115 154-214 (355)
287 PRK14949 DNA polymerase III su 95.2 0.11 2.4E-06 54.6 9.6 24 72-96 41-64 (944)
288 PF03796 DnaB_C: DnaB-like hel 95.2 0.11 2.4E-06 47.3 8.6 133 58-211 8-144 (259)
289 TIGR03499 FlhF flagellar biosy 95.2 0.15 3.2E-06 47.1 9.5 20 69-88 194-213 (282)
290 PRK05707 DNA polymerase III su 95.2 0.26 5.6E-06 46.5 11.3 93 51-144 4-121 (328)
291 PRK08691 DNA polymerase III su 95.2 0.096 2.1E-06 53.8 8.9 20 70-89 39-58 (709)
292 PRK14957 DNA polymerase III su 95.1 0.11 2.3E-06 52.4 9.0 24 71-95 40-63 (546)
293 cd01121 Sms Sms (bacterial rad 95.1 0.3 6.4E-06 46.9 11.7 61 59-124 71-132 (372)
294 PF05496 RuvB_N: Holliday junc 95.1 0.083 1.8E-06 46.6 7.2 19 70-88 51-69 (233)
295 PRK14962 DNA polymerase III su 95.1 0.26 5.6E-06 48.9 11.5 18 71-88 38-55 (472)
296 PRK07471 DNA polymerase III su 95.1 0.3 6.6E-06 46.8 11.6 27 70-97 42-68 (365)
297 KOG0742 AAA+-type ATPase [Post 95.1 0.043 9.2E-07 52.1 5.5 17 70-86 385-401 (630)
298 COG2256 MGS1 ATPase related to 95.0 0.11 2.4E-06 49.4 8.1 19 70-88 49-67 (436)
299 COG4626 Phage terminase-like p 95.0 0.31 6.7E-06 48.3 11.6 77 50-127 61-144 (546)
300 PRK14965 DNA polymerase III su 95.0 0.21 4.5E-06 51.0 10.8 24 71-95 40-63 (576)
301 TIGR02688 conserved hypothetic 95.0 0.11 2.3E-06 50.3 8.1 50 37-87 174-227 (449)
302 PRK14952 DNA polymerase III su 95.0 0.21 4.5E-06 50.8 10.7 21 196-216 117-137 (584)
303 PRK08939 primosomal protein Dn 95.0 0.29 6.2E-06 45.7 10.9 27 68-95 155-181 (306)
304 PRK05563 DNA polymerase III su 95.0 0.082 1.8E-06 53.7 7.8 21 69-89 38-58 (559)
305 PRK09112 DNA polymerase III su 95.0 0.12 2.6E-06 49.2 8.4 40 56-96 29-71 (351)
306 PF06745 KaiC: KaiC; InterPro 94.9 0.16 3.5E-06 45.1 8.8 58 64-126 14-72 (226)
307 COG1474 CDC6 Cdc6-related prot 94.9 0.14 3.1E-06 49.0 8.9 27 70-97 43-69 (366)
308 PRK09183 transposase/IS protei 94.9 0.14 3.1E-06 46.6 8.5 74 22-117 72-145 (259)
309 KOG1131 RNA polymerase II tran 94.8 0.14 3.1E-06 50.0 8.5 79 46-124 12-90 (755)
310 COG0470 HolB ATPase involved i 94.8 0.18 3.9E-06 47.2 9.4 27 69-96 23-50 (325)
311 PRK00771 signal recognition pa 94.8 0.24 5.2E-06 48.6 10.2 26 70-96 96-121 (437)
312 TIGR03015 pepcterm_ATPase puta 94.8 0.069 1.5E-06 48.7 6.2 37 50-86 23-60 (269)
313 PRK14951 DNA polymerase III su 94.8 0.1 2.2E-06 53.3 7.8 21 196-216 123-143 (618)
314 PRK08451 DNA polymerase III su 94.7 0.27 5.8E-06 49.3 10.6 21 195-215 115-135 (535)
315 KOG0921 Dosage compensation co 94.7 0.064 1.4E-06 55.5 6.2 112 64-210 388-506 (1282)
316 TIGR00678 holB DNA polymerase 94.7 0.59 1.3E-05 40.1 11.6 26 70-96 15-40 (188)
317 PRK08533 flagellar accessory p 94.7 0.69 1.5E-05 41.3 12.3 55 66-125 21-75 (230)
318 PRK06090 DNA polymerase III su 94.7 0.18 3.8E-06 47.3 8.7 46 50-96 3-51 (319)
319 PRK13709 conjugal transfer nic 94.7 0.25 5.3E-06 56.2 11.1 65 50-117 967-1032(1747)
320 PRK14969 DNA polymerase III su 94.6 0.43 9.3E-06 48.1 11.9 21 196-216 118-138 (527)
321 PRK14963 DNA polymerase III su 94.6 0.2 4.4E-06 50.1 9.5 25 71-96 38-62 (504)
322 PRK06964 DNA polymerase III su 94.6 0.43 9.4E-06 45.2 11.2 45 51-96 2-47 (342)
323 PRK04195 replication factor C 94.6 0.21 4.6E-06 49.9 9.5 18 69-86 39-56 (482)
324 TIGR03878 thermo_KaiC_2 KaiC d 94.6 0.84 1.8E-05 41.5 12.7 40 65-108 32-71 (259)
325 TIGR02785 addA_Gpos recombinat 94.5 0.11 2.3E-06 57.9 7.9 66 51-123 2-67 (1232)
326 PRK14723 flhF flagellar biosyn 94.5 0.23 5E-06 51.7 9.7 22 69-90 185-206 (767)
327 COG2805 PilT Tfp pilus assembl 94.5 0.09 2E-06 48.1 6.0 55 14-97 98-152 (353)
328 PRK14961 DNA polymerase III su 94.5 0.26 5.7E-06 47.2 9.6 24 71-95 40-63 (363)
329 KOG0734 AAA+-type ATPase conta 94.5 0.33 7.2E-06 47.9 10.0 16 70-85 338-353 (752)
330 COG0593 DnaA ATPase involved i 94.5 0.22 4.9E-06 48.0 8.9 31 197-227 175-206 (408)
331 TIGR02397 dnaX_nterm DNA polym 94.4 0.28 6E-06 46.7 9.7 26 70-96 37-62 (355)
332 TIGR01241 FtsH_fam ATP-depende 94.4 0.46 1E-05 47.6 11.6 19 68-86 87-105 (495)
333 COG1223 Predicted ATPase (AAA+ 94.4 0.51 1.1E-05 42.4 10.2 19 68-86 150-168 (368)
334 COG1222 RPT1 ATP-dependent 26S 94.3 0.78 1.7E-05 43.2 11.7 53 22-86 148-202 (406)
335 PRK05896 DNA polymerase III su 94.3 0.17 3.7E-06 51.3 8.0 26 70-96 39-64 (605)
336 PRK14959 DNA polymerase III su 94.3 0.33 7.1E-06 49.5 10.1 21 70-90 39-59 (624)
337 PTZ00454 26S protease regulato 94.3 0.86 1.9E-05 44.2 12.6 19 68-86 178-196 (398)
338 PRK00440 rfc replication facto 94.2 0.41 9E-06 44.7 10.3 16 71-86 40-55 (319)
339 TIGR03600 phage_DnaB phage rep 94.2 0.41 8.9E-06 46.9 10.6 48 58-108 183-230 (421)
340 COG2812 DnaX DNA polymerase II 94.2 0.041 8.9E-07 54.6 3.5 27 195-221 117-143 (515)
341 PRK06904 replicative DNA helic 94.2 0.6 1.3E-05 46.4 11.7 61 59-123 211-271 (472)
342 PF13173 AAA_14: AAA domain 94.2 0.72 1.6E-05 36.9 10.2 17 69-85 2-18 (128)
343 PRK12422 chromosomal replicati 94.2 0.36 7.7E-06 47.6 10.0 41 70-115 142-182 (445)
344 PRK14950 DNA polymerase III su 94.2 0.15 3.2E-06 52.2 7.5 24 70-94 39-62 (585)
345 TIGR00959 ffh signal recogniti 94.2 0.63 1.4E-05 45.5 11.5 22 71-92 101-122 (428)
346 PRK06067 flagellar accessory p 94.1 0.47 1E-05 42.4 9.8 62 59-125 14-76 (234)
347 KOG0344 ATP-dependent RNA heli 94.0 0.42 9.2E-06 47.4 9.8 100 78-207 366-466 (593)
348 KOG0744 AAA+-type ATPase [Post 93.9 0.23 4.9E-06 46.0 7.3 118 69-187 177-310 (423)
349 PRK14955 DNA polymerase III su 93.9 0.4 8.6E-06 46.6 9.6 20 70-89 39-58 (397)
350 PRK12726 flagellar biosynthesi 93.8 0.4 8.7E-06 45.9 9.1 23 68-90 205-227 (407)
351 PHA00012 I assembly protein 93.8 0.23 5.1E-06 46.1 7.3 26 72-97 4-29 (361)
352 PF05729 NACHT: NACHT domain 93.7 1.2 2.6E-05 36.7 11.2 43 72-115 3-47 (166)
353 TIGR02760 TraI_TIGR conjugativ 93.7 0.32 7E-06 56.4 9.7 65 49-118 1018-1085(1960)
354 PF05876 Terminase_GpA: Phage 93.7 0.1 2.2E-06 52.9 5.2 73 49-126 15-88 (557)
355 COG3973 Superfamily I DNA and 93.7 0.32 7E-06 48.6 8.3 87 35-126 190-285 (747)
356 TIGR00767 rho transcription te 93.6 0.46 1E-05 45.7 9.2 30 65-95 164-193 (415)
357 PRK13342 recombination factor 93.6 0.5 1.1E-05 46.2 9.8 17 70-86 37-53 (413)
358 COG2804 PulE Type II secretory 93.6 0.14 3.1E-06 50.2 5.8 42 52-97 243-285 (500)
359 cd00984 DnaB_C DnaB helicase C 93.6 0.3 6.4E-06 43.8 7.6 46 60-108 4-49 (242)
360 PRK05703 flhF flagellar biosyn 93.5 0.4 8.8E-06 46.9 8.9 20 69-88 221-240 (424)
361 PF03237 Terminase_6: Terminas 93.5 1.1 2.5E-05 42.3 12.0 42 73-116 1-42 (384)
362 PRK07940 DNA polymerase III su 93.5 0.53 1.1E-05 45.6 9.5 26 70-96 37-62 (394)
363 PRK13341 recombination factor 93.4 0.41 8.9E-06 50.0 9.3 18 70-87 53-70 (725)
364 PRK06731 flhF flagellar biosyn 93.4 1.1 2.5E-05 40.9 11.1 21 69-89 75-95 (270)
365 COG0466 Lon ATP-dependent Lon 93.4 0.82 1.8E-05 46.8 10.8 54 169-226 392-446 (782)
366 PRK09376 rho transcription ter 93.4 0.6 1.3E-05 44.9 9.4 43 52-96 153-195 (416)
367 PRK14954 DNA polymerase III su 93.3 0.14 3E-06 52.4 5.6 21 70-90 39-59 (620)
368 cd01130 VirB11-like_ATPase Typ 93.3 0.23 5.1E-06 42.7 6.3 33 50-85 9-41 (186)
369 TIGR00580 mfd transcription-re 93.3 0.53 1.1E-05 50.6 10.0 82 101-209 660-742 (926)
370 cd03115 SRP The signal recogni 93.3 1.3 2.9E-05 37.3 10.8 17 72-88 3-19 (173)
371 PRK14953 DNA polymerase III su 93.3 0.47 1E-05 47.3 9.1 20 195-214 117-136 (486)
372 PRK06305 DNA polymerase III su 93.3 0.37 8.1E-06 47.6 8.3 25 70-95 40-64 (451)
373 PRK06995 flhF flagellar biosyn 93.2 1.3 2.8E-05 44.0 11.8 23 68-90 255-277 (484)
374 PRK06871 DNA polymerase III su 93.2 0.87 1.9E-05 42.9 10.2 93 51-144 3-122 (325)
375 TIGR02655 circ_KaiC circadian 93.1 1.1 2.4E-05 44.7 11.6 65 57-126 250-315 (484)
376 PRK14971 DNA polymerase III su 93.1 0.43 9.4E-06 49.0 8.7 18 71-88 41-58 (614)
377 PRK14948 DNA polymerase III su 93.1 0.5 1.1E-05 48.6 9.1 26 70-96 39-64 (620)
378 KOG0652 26S proteasome regulat 93.0 0.75 1.6E-05 41.4 8.9 19 67-85 203-221 (424)
379 PRK14721 flhF flagellar biosyn 93.0 0.67 1.5E-05 45.1 9.5 68 68-138 190-257 (420)
380 PRK09354 recA recombinase A; P 93.0 1.4 3.1E-05 41.8 11.4 52 59-114 48-101 (349)
381 KOG2004 Mitochondrial ATP-depe 93.0 0.19 4.1E-06 51.1 5.8 39 169-211 480-519 (906)
382 PRK03992 proteasome-activating 92.9 1.4 3E-05 42.7 11.7 19 68-86 164-182 (389)
383 COG1132 MdlB ABC-type multidru 92.9 0.59 1.3E-05 47.7 9.5 145 66-224 352-510 (567)
384 PRK13851 type IV secretion sys 92.9 0.19 4.1E-06 47.7 5.4 42 68-114 161-202 (344)
385 TIGR00416 sms DNA repair prote 92.9 1.3 2.8E-05 43.8 11.4 61 59-124 83-144 (454)
386 KOG0730 AAA+-type ATPase [Post 92.8 0.76 1.6E-05 46.5 9.6 61 15-86 424-485 (693)
387 KOG0739 AAA+-type ATPase [Post 92.7 1.6 3.5E-05 40.1 10.7 45 71-123 168-212 (439)
388 COG0556 UvrB Helicase subunit 92.7 0.7 1.5E-05 45.6 8.9 93 91-215 436-529 (663)
389 PTZ00293 thymidine kinase; Pro 92.6 0.27 5.8E-06 43.1 5.6 40 69-112 4-43 (211)
390 cd01126 TraG_VirD4 The TraG/Tr 92.6 0.11 2.3E-06 50.3 3.4 48 71-124 1-48 (384)
391 cd01394 radB RadB. The archaea 92.5 2.3 5E-05 37.3 11.7 46 59-108 8-54 (218)
392 TIGR02640 gas_vesic_GvpN gas v 92.5 0.093 2E-06 47.9 2.8 37 51-87 3-39 (262)
393 TIGR02868 CydC thiol reductant 92.5 0.55 1.2E-05 47.4 8.6 29 66-96 358-386 (529)
394 PRK10689 transcription-repair 92.5 0.85 1.8E-05 50.3 10.4 82 101-209 809-891 (1147)
395 PHA00350 putative assembly pro 92.5 0.45 9.8E-06 45.9 7.4 26 72-97 4-30 (399)
396 PHA03372 DNA packaging termina 92.4 2 4.3E-05 43.4 11.9 78 35-122 175-253 (668)
397 TIGR02012 tigrfam_recA protein 92.4 0.66 1.4E-05 43.5 8.2 52 58-113 42-95 (321)
398 TIGR00064 ftsY signal recognit 92.3 0.69 1.5E-05 42.4 8.2 21 70-90 73-93 (272)
399 KOG2170 ATPase of the AAA+ sup 92.3 0.41 8.9E-06 43.9 6.5 18 338-355 305-322 (344)
400 PRK06647 DNA polymerase III su 92.3 0.66 1.4E-05 47.1 8.8 24 71-95 40-63 (563)
401 PF02534 T4SS-DNA_transf: Type 92.3 0.17 3.7E-06 50.2 4.6 50 70-125 45-94 (469)
402 PF06733 DEAD_2: DEAD_2; Inte 92.3 0.084 1.8E-06 44.9 2.0 45 168-212 115-160 (174)
403 PRK08840 replicative DNA helic 92.3 1.2 2.7E-05 44.0 10.4 59 60-122 208-266 (464)
404 TIGR02639 ClpA ATP-dependent C 92.1 2.1 4.6E-05 45.1 12.6 37 50-86 182-220 (731)
405 PF14516 AAA_35: AAA-like doma 92.1 1.4 3E-05 41.7 10.3 41 53-97 18-58 (331)
406 PRK14970 DNA polymerase III su 92.1 0.93 2E-05 43.5 9.3 17 70-86 40-56 (367)
407 TIGR00763 lon ATP-dependent pr 92.1 1.1 2.5E-05 47.4 10.6 19 68-86 346-364 (775)
408 CHL00095 clpC Clp protease ATP 92.1 0.24 5.2E-06 52.9 5.6 35 52-86 511-556 (821)
409 PF01637 Arch_ATPase: Archaeal 92.1 1.3 2.7E-05 38.9 9.5 25 69-94 20-44 (234)
410 KOG0331 ATP-dependent RNA heli 92.1 0.93 2E-05 45.0 9.1 75 100-203 340-415 (519)
411 KOG0741 AAA+-type ATPase [Post 92.0 0.2 4.3E-06 49.3 4.4 79 70-212 257-339 (744)
412 PRK09361 radB DNA repair and r 92.0 2.3 5.1E-05 37.5 11.1 46 59-108 12-58 (225)
413 KOG0732 AAA+-type ATPase conta 92.0 0.45 9.8E-06 50.9 7.2 47 35-86 269-316 (1080)
414 TIGR01650 PD_CobS cobaltochela 91.9 0.17 3.8E-06 47.3 3.8 19 67-85 62-80 (327)
415 PRK10416 signal recognition pa 91.9 1.8 4E-05 40.6 10.7 19 69-87 114-132 (318)
416 cd01128 rho_factor Transcripti 91.9 0.83 1.8E-05 41.3 8.1 20 65-84 12-31 (249)
417 COG1219 ClpX ATP-dependent pro 91.9 0.11 2.3E-06 48.0 2.3 17 70-86 98-114 (408)
418 KOG0058 Peptide exporter, ABC 91.9 0.46 9.9E-06 48.6 6.9 148 66-227 491-652 (716)
419 PRK06321 replicative DNA helic 91.8 1.2 2.5E-05 44.4 9.7 66 51-122 210-275 (472)
420 KOG2228 Origin recognition com 91.8 1.5 3.3E-05 41.0 9.6 47 181-228 122-168 (408)
421 PRK13897 type IV secretion sys 91.8 0.26 5.6E-06 50.3 5.2 50 69-124 158-207 (606)
422 TIGR02524 dot_icm_DotB Dot/Icm 91.8 0.4 8.7E-06 45.8 6.2 27 68-95 133-159 (358)
423 COG2909 MalT ATP-dependent tra 91.8 0.43 9.3E-06 49.6 6.7 30 198-227 130-159 (894)
424 PRK13900 type IV secretion sys 91.7 0.28 6E-06 46.4 5.0 41 68-113 159-199 (332)
425 PRK08006 replicative DNA helic 91.7 1.7 3.6E-05 43.2 10.6 60 59-122 214-273 (471)
426 PRK07004 replicative DNA helic 91.7 0.63 1.4E-05 46.1 7.6 34 59-93 203-236 (460)
427 PRK10867 signal recognition pa 91.7 2.2 4.8E-05 41.8 11.3 21 71-91 102-122 (433)
428 TIGR01425 SRP54_euk signal rec 91.6 2.8 6.1E-05 41.0 11.8 18 71-88 102-119 (429)
429 COG1200 RecG RecG-like helicas 91.5 0.72 1.6E-05 46.9 7.8 84 100-210 472-564 (677)
430 CHL00176 ftsH cell division pr 91.5 1.3 2.7E-05 45.8 9.8 18 69-86 216-233 (638)
431 PF00437 T2SE: Type II/IV secr 91.5 0.14 3.1E-06 46.7 2.8 43 67-113 125-167 (270)
432 KOG2227 Pre-initiation complex 91.4 1.6 3.4E-05 42.6 9.6 51 69-121 175-226 (529)
433 TIGR03819 heli_sec_ATPase heli 91.4 0.55 1.2E-05 44.5 6.7 64 40-113 154-217 (340)
434 COG1074 RecB ATP-dependent exo 91.3 0.4 8.6E-06 53.0 6.3 57 68-124 15-72 (1139)
435 PRK07133 DNA polymerase III su 91.3 0.87 1.9E-05 47.3 8.4 18 71-88 42-59 (725)
436 PRK05595 replicative DNA helic 91.3 1.4 3E-05 43.5 9.6 61 58-122 190-250 (444)
437 PRK12724 flagellar biosynthesi 91.2 3.2 6.9E-05 40.4 11.5 23 70-92 224-246 (432)
438 cd00983 recA RecA is a bacter 91.1 0.82 1.8E-05 42.9 7.4 53 58-114 42-96 (325)
439 PRK12727 flagellar biosynthesi 91.1 1 2.2E-05 45.0 8.3 22 67-88 348-369 (559)
440 COG3267 ExeA Type II secretory 91.1 1.3 2.9E-05 39.7 8.2 36 58-94 39-75 (269)
441 PRK05636 replicative DNA helic 91.0 2.1 4.5E-05 43.0 10.5 29 58-86 254-282 (505)
442 COG1197 Mfd Transcription-repa 90.9 1.2 2.5E-05 48.2 9.0 85 99-209 801-885 (1139)
443 TIGR00665 DnaB replicative DNA 90.8 1.8 3.8E-05 42.6 9.9 63 58-124 184-246 (434)
444 PRK08058 DNA polymerase III su 90.8 2.1 4.6E-05 40.4 10.0 41 55-96 11-54 (329)
445 KOG0383 Predicted helicase [Ge 90.6 0.037 8E-07 56.5 -2.1 154 49-211 294-450 (696)
446 COG0630 VirB11 Type IV secreto 90.6 0.52 1.1E-05 44.2 5.6 57 49-113 126-182 (312)
447 cd01129 PulE-GspE PulE/GspE Th 90.6 0.56 1.2E-05 42.8 5.7 61 43-112 59-119 (264)
448 TIGR02639 ClpA ATP-dependent C 90.5 0.69 1.5E-05 48.7 7.0 16 71-86 486-501 (731)
449 KOG1806 DEAD box containing he 90.4 0.52 1.1E-05 49.8 5.6 75 47-127 735-809 (1320)
450 PRK04328 hypothetical protein; 90.3 0.83 1.8E-05 41.3 6.5 56 66-126 20-75 (249)
451 PRK05748 replicative DNA helic 90.3 2.4 5.2E-05 41.9 10.3 61 58-122 192-252 (448)
452 TIGR02203 MsbA_lipidA lipid A 90.1 1.4 3E-05 45.0 8.7 30 195-224 485-514 (571)
453 TIGR00631 uvrb excinuclease AB 90.0 2.4 5.2E-05 44.0 10.3 90 91-209 432-522 (655)
454 PRK08506 replicative DNA helic 90.0 1.1 2.4E-05 44.6 7.6 61 58-123 181-241 (472)
455 TIGR01243 CDC48 AAA family ATP 89.9 1.5 3.3E-05 46.2 9.0 19 67-85 210-228 (733)
456 TIGR03346 chaperone_ClpB ATP-d 89.9 2.8 6.1E-05 45.0 11.1 37 50-86 173-211 (852)
457 PRK13850 type IV secretion sys 89.9 0.44 9.5E-06 49.3 4.8 50 69-124 139-188 (670)
458 cd01393 recA_like RecA is a b 89.8 1.2 2.7E-05 39.2 7.2 51 60-110 9-62 (226)
459 TIGR00596 rad1 DNA repair prot 89.7 0.39 8.4E-06 50.7 4.3 43 170-213 5-47 (814)
460 cd01131 PilT Pilus retraction 89.7 0.52 1.1E-05 41.0 4.5 38 72-112 4-41 (198)
461 TIGR02784 addA_alphas double-s 89.7 1.5 3.3E-05 48.7 9.1 58 68-126 9-66 (1141)
462 PRK09165 replicative DNA helic 89.6 1.9 4.1E-05 43.2 9.0 29 58-86 206-234 (497)
463 PRK11034 clpA ATP-dependent Cl 89.6 2.8 6E-05 44.3 10.4 18 69-86 207-224 (758)
464 TIGR01420 pilT_fam pilus retra 89.4 0.6 1.3E-05 44.4 5.0 43 68-113 121-163 (343)
465 cd00544 CobU Adenosylcobinamid 89.3 9.5 0.00021 32.2 11.8 45 72-123 2-46 (169)
466 PRK05800 cobU adenosylcobinami 89.3 5.5 0.00012 33.7 10.3 16 71-86 3-18 (170)
467 TIGR01243 CDC48 AAA family ATP 89.3 2.9 6.3E-05 44.1 10.5 19 68-86 486-504 (733)
468 TIGR02788 VirB11 P-type DNA tr 89.2 0.68 1.5E-05 43.3 5.2 19 67-85 142-160 (308)
469 PRK04841 transcriptional regul 89.2 3.2 6.9E-05 44.8 11.1 31 197-227 121-151 (903)
470 PRK10436 hypothetical protein; 89.1 0.56 1.2E-05 46.4 4.7 47 43-95 197-243 (462)
471 PRK08760 replicative DNA helic 89.1 1.6 3.5E-05 43.4 8.1 63 58-124 218-280 (476)
472 COG0210 UvrD Superfamily I DNA 89.1 1.1 2.5E-05 46.5 7.3 71 50-126 2-72 (655)
473 TIGR02538 type_IV_pilB type IV 89.0 0.65 1.4E-05 47.3 5.3 47 43-95 295-341 (564)
474 PRK12608 transcription termina 89.0 3.5 7.7E-05 39.4 9.8 42 53-96 118-159 (380)
475 COG4098 comFA Superfamily II D 88.8 3.5 7.5E-05 38.7 9.2 94 91-213 295-389 (441)
476 PRK04537 ATP-dependent RNA hel 88.8 3.6 7.9E-05 42.0 10.5 77 101-206 257-334 (572)
477 PF01580 FtsK_SpoIIIE: FtsK/Sp 88.7 0.78 1.7E-05 39.9 5.0 41 69-109 38-78 (205)
478 PF03969 AFG1_ATPase: AFG1-lik 88.5 4.4 9.5E-05 38.8 10.2 51 68-125 61-111 (362)
479 cd01125 repA Hexameric Replica 88.5 17 0.00037 32.4 13.6 55 71-126 3-65 (239)
480 TIGR02525 plasmid_TraJ plasmid 88.4 1.2 2.7E-05 42.7 6.5 44 68-113 148-191 (372)
481 COG2842 Uncharacterized ATPase 88.4 1.4 3.1E-05 40.3 6.5 42 63-112 88-129 (297)
482 TIGR03345 VI_ClpV1 type VI sec 88.3 2 4.4E-05 46.0 8.6 16 71-86 598-613 (852)
483 PRK10865 protein disaggregatio 88.3 0.97 2.1E-05 48.4 6.2 17 71-87 600-616 (857)
484 PF13481 AAA_25: AAA domain; P 88.1 0.87 1.9E-05 39.0 4.8 64 62-126 24-94 (193)
485 PRK13764 ATPase; Provisional 88.1 1.1 2.3E-05 45.8 6.0 27 68-95 256-282 (602)
486 KOG0729 26S proteasome regulat 88.0 21 0.00045 32.5 14.0 19 68-86 210-228 (435)
487 TIGR03880 KaiC_arch_3 KaiC dom 87.9 1.4 3.1E-05 38.9 6.2 56 65-125 12-67 (224)
488 PF10412 TrwB_AAD_bind: Type I 87.8 0.59 1.3E-05 45.2 3.9 48 68-119 14-61 (386)
489 PRK10865 protein disaggregatio 87.8 2.6 5.6E-05 45.3 9.0 36 51-86 179-216 (857)
490 PHA02535 P terminase ATPase su 87.7 3.1 6.8E-05 42.0 9.0 86 35-127 123-208 (581)
491 PHA02542 41 41 helicase; Provi 87.5 4.4 9.5E-05 40.3 9.8 48 57-108 177-225 (473)
492 TIGR02533 type_II_gspE general 87.5 0.94 2E-05 45.2 5.2 46 43-95 221-267 (486)
493 cd01127 TrwB Bacterial conjuga 87.4 0.72 1.6E-05 45.0 4.3 49 65-117 38-86 (410)
494 COG3972 Superfamily I DNA and 87.3 4.9 0.00011 39.6 9.6 71 48-125 160-230 (660)
495 PRK11176 lipid transporter ATP 87.3 2.7 5.9E-05 43.0 8.6 28 67-96 367-394 (582)
496 PRK13695 putative NTPase; Prov 87.3 15 0.00031 30.9 11.9 24 71-95 2-25 (174)
497 PF12846 AAA_10: AAA-like doma 87.1 1.1 2.4E-05 41.2 5.2 42 70-115 2-43 (304)
498 PHA02244 ATPase-like protein 87.0 0.65 1.4E-05 44.3 3.6 22 65-86 115-136 (383)
499 KOG0333 U5 snRNP-like RNA heli 87.0 3.6 7.8E-05 40.7 8.5 74 100-202 516-590 (673)
500 PF03266 NTPase_1: NTPase; In 87.0 0.84 1.8E-05 38.6 3.9 26 71-97 1-26 (168)
No 1
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.1e-46 Score=339.90 Aligned_cols=283 Identities=34% Similarity=0.482 Sum_probs=257.3
Q ss_pred CCccCccccCCCCCCCCCCHHHHHHHHhCCCCCccHhhHHHHHHhhCCCCCCCCEEEECCCCCchHHHhHHHHHHHhhhc
Q 017196 18 PVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNR 97 (375)
Q Consensus 18 ~~~~~~~~~~~~~~~~~l~~~i~~~l~~~g~~~~~~~Q~~~~~~~~~~~~~~~~~ii~a~TGsGKTl~~~l~il~~l~~~ 97 (375)
-....+|.+++ +++++.+++...||..|+++|++++|..+ .|+|+|..|.||||||.+|++|+++.+...
T Consensus 57 ~e~~~sf~dLg------v~~~L~~ac~~l~~~~PT~IQ~~aiP~~L----~g~dvIglAeTGSGKT~afaLPIl~~LL~~ 126 (476)
T KOG0330|consen 57 DESFKSFADLG------VHPELLEACQELGWKKPTKIQSEAIPVAL----GGRDVIGLAETGSGKTGAFALPILQRLLQE 126 (476)
T ss_pred hhhhcchhhcC------cCHHHHHHHHHhCcCCCchhhhhhcchhh----CCCcEEEEeccCCCchhhhHHHHHHHHHcC
Confidence 34456788888 99999999999999999999999865554 899999999999999999999999999986
Q ss_pred ccCCceEEEEcccHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcCCCcEEE
Q 017196 98 AVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILV 177 (375)
Q Consensus 98 ~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiV 177 (375)
+ +.++++|++||||||.|+...++.++...|++++.+.||.....+.. .+...++|+|
T Consensus 127 p-~~~~~lVLtPtRELA~QI~e~fe~Lg~~iglr~~~lvGG~~m~~q~~---------------------~L~kkPhilV 184 (476)
T KOG0330|consen 127 P-KLFFALVLTPTRELAQQIAEQFEALGSGIGLRVAVLVGGMDMMLQAN---------------------QLSKKPHILV 184 (476)
T ss_pred C-CCceEEEecCcHHHHHHHHHHHHHhccccCeEEEEEecCchHHHHHH---------------------HhhcCCCEEE
Confidence 5 45899999999999999999999999999999999999998777654 4566779999
Q ss_pred eCcHHHHHHHhhcCCCCCCCccEEEEecchhhhhHhHHhHHHHHHHhhhccccccccccccccccccccccccccccccc
Q 017196 178 ATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVER 257 (375)
Q Consensus 178 ~Tp~~l~~~l~~~~~~~~~~~~~vIiDE~h~l~~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (375)
+||++|++++.+.+.+.++.++++|+||||.+++..|...+..|+..++.
T Consensus 185 aTPGrL~dhl~~Tkgf~le~lk~LVlDEADrlLd~dF~~~ld~ILk~ip~------------------------------ 234 (476)
T KOG0330|consen 185 ATPGRLWDHLENTKGFSLEQLKFLVLDEADRLLDMDFEEELDYILKVIPR------------------------------ 234 (476)
T ss_pred eCcHHHHHHHHhccCccHHHhHHHhhchHHhhhhhhhHHHHHHHHHhcCc------------------------------
Confidence 99999999999889999999999999999999999999999999999986
Q ss_pred CCCCCCCCceeEEEEEEecCCCchhhhccccCCCeEEecCCccccCcccceeEEEeccCCCcHHHHHHHHHhcCCCeEEE
Q 017196 258 GFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIV 337 (375)
Q Consensus 258 ~~~~~~~~~~q~i~~SATl~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~k~lI 337 (375)
..|.++||||++..+.++....+.+|..+.+..... .-+.++++|..++...|...|+.+++...+..+||
T Consensus 235 --------erqt~LfsATMt~kv~kL~rasl~~p~~v~~s~ky~-tv~~lkQ~ylfv~~k~K~~yLV~ll~e~~g~s~iV 305 (476)
T KOG0330|consen 235 --------ERQTFLFSATMTKKVRKLQRASLDNPVKVAVSSKYQ-TVDHLKQTYLFVPGKDKDTYLVYLLNELAGNSVIV 305 (476)
T ss_pred --------cceEEEEEeecchhhHHHHhhccCCCeEEeccchhc-chHHhhhheEeccccccchhHHHHHHhhcCCcEEE
Confidence 678999999999999999999999999998877653 34677888888999999999999999998899999
Q ss_pred EcCChhhHHHHHHHHHHhcCCcceEEecccccccccc
Q 017196 338 FTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVR 374 (375)
Q Consensus 338 F~~s~~~a~~l~~~L~~~g~~~~~~~~lh~~~~~~~R 374 (375)
||++...++.++-.|+..| +.+..+||.|++..|
T Consensus 306 F~~t~~tt~~la~~L~~lg---~~a~~LhGqmsq~~R 339 (476)
T KOG0330|consen 306 FCNTCNTTRFLALLLRNLG---FQAIPLHGQMSQSKR 339 (476)
T ss_pred EEeccchHHHHHHHHHhcC---cceecccchhhHHHH
Confidence 9999999999999999555 999999999999887
No 2
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.9e-46 Score=358.31 Aligned_cols=275 Identities=29% Similarity=0.435 Sum_probs=248.9
Q ss_pred CCHHHHHHHHhCCCCCccHhhHHHHHHhhCCCCCCCCEEEECCCCCchHHHhHHHHHHHhhhc-----ccCCceEEEEcc
Q 017196 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNR-----AVRCLRALVVLP 109 (375)
Q Consensus 35 l~~~i~~~l~~~g~~~~~~~Q~~~~~~~~~~~~~~~~~ii~a~TGsGKTl~~~l~il~~l~~~-----~~~~~~~lil~P 109 (375)
+++++...++..||..|+|+|.++|+.++ .|+|++..|.||||||++|++|++..+... ...+|++|||+|
T Consensus 98 ls~~~~~~lk~~g~~~PtpIQaq~wp~~l----~GrD~v~iA~TGSGKTLay~lP~i~~l~~~~~~~~~~~~P~vLVL~P 173 (519)
T KOG0331|consen 98 LSEELMKALKEQGFEKPTPIQAQGWPIAL----SGRDLVGIARTGSGKTLAYLLPAIVHLNNEQGKLSRGDGPIVLVLAP 173 (519)
T ss_pred ccHHHHHHHHhcCCCCCchhhhcccceec----cCCceEEEeccCCcchhhhhhHHHHHHHhccccccCCCCCeEEEEcC
Confidence 88899999999999999999999987766 799999999999999999999999999862 345789999999
Q ss_pred cHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcCCCcEEEeCcHHHHHHHhh
Q 017196 110 TRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINA 189 (375)
Q Consensus 110 t~~L~~Q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiV~Tp~~l~~~l~~ 189 (375)
|||||.|+.+.+.+++...+++..+++||.....+.+ .+..+.+|+|+||++|.+++..
T Consensus 174 TRELA~QV~~~~~~~~~~~~~~~~cvyGG~~~~~Q~~---------------------~l~~gvdiviaTPGRl~d~le~ 232 (519)
T KOG0331|consen 174 TRELAVQVQAEAREFGKSLRLRSTCVYGGAPKGPQLR---------------------DLERGVDVVIATPGRLIDLLEE 232 (519)
T ss_pred cHHHHHHHHHHHHHHcCCCCccEEEEeCCCCccHHHH---------------------HHhcCCcEEEeCChHHHHHHHc
Confidence 9999999999999999999999999999998776654 6788999999999999999999
Q ss_pred cCCCCCCCccEEEEecchhhhhHhHHhHHHHHHHhhhcccccccccccccccccccccccccccccccCCCCCCCCceeE
Q 017196 190 TRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVK 269 (375)
Q Consensus 190 ~~~~~~~~~~~vIiDE~h~l~~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~ 269 (375)
+.+.++.+.++|+||||.|++.+|.+.+..|++.++.. ..|.
T Consensus 233 -g~~~l~~v~ylVLDEADrMldmGFe~qI~~Il~~i~~~-------------------------------------~rQt 274 (519)
T KOG0331|consen 233 -GSLNLSRVTYLVLDEADRMLDMGFEPQIRKILSQIPRP-------------------------------------DRQT 274 (519)
T ss_pred -CCccccceeEEEeccHHhhhccccHHHHHHHHHhcCCC-------------------------------------cccE
Confidence 77999999999999999999999999999999998542 3479
Q ss_pred EEEEEecCCCchhhhccccCCCeEEecCCc-cccCcccceeEEEeccCCCcHHHHHHHHHhc---CCCeEEEEcCChhhH
Q 017196 270 MVLSATLTQDPNKLAQLDLHHPLFLTTGET-RYKLPERLESYKLICESKLKPLYLVALLQSL---GEEKCIVFTSSVEST 345 (375)
Q Consensus 270 i~~SATl~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~---~~~k~lIF~~s~~~a 345 (375)
+++|||+|..+..++..++.+|..+.+... ......++.+....|+...|...|..+|..+ ..+|+||||+|++.|
T Consensus 275 lm~saTwp~~v~~lA~~fl~~~~~i~ig~~~~~~a~~~i~qive~~~~~~K~~~l~~lL~~~~~~~~~KvIIFc~tkr~~ 354 (519)
T KOG0331|consen 275 LMFSATWPKEVRQLAEDFLNNPIQINVGNKKELKANHNIRQIVEVCDETAKLRKLGKLLEDISSDSEGKVIIFCETKRTC 354 (519)
T ss_pred EEEeeeccHHHHHHHHHHhcCceEEEecchhhhhhhcchhhhhhhcCHHHHHHHHHHHHHHHhccCCCcEEEEecchhhH
Confidence 999999999999999999999999988865 4455678889998999889999999999876 456999999999999
Q ss_pred HHHHHHHHHhcCCcceEEeccccccccccC
Q 017196 346 HRLCTLLNHFGELRIKIKEYSGLQRQSVRR 375 (375)
Q Consensus 346 ~~l~~~L~~~g~~~~~~~~lh~~~~~~~R~ 375 (375)
++++..|+..+ +++..+||+.+++||+
T Consensus 355 ~~l~~~l~~~~---~~a~~iHGd~sQ~eR~ 381 (519)
T KOG0331|consen 355 DELARNLRRKG---WPAVAIHGDKSQSERD 381 (519)
T ss_pred HHHHHHHHhcC---cceeeecccccHHHHH
Confidence 99999999555 9999999999999995
No 3
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.7e-44 Score=357.06 Aligned_cols=281 Identities=30% Similarity=0.451 Sum_probs=251.7
Q ss_pred CccccCCCCCCCCCCHHHHHHHHhCCCCCccHhhHHHHHHhhCCCCCCCCEEEECCCCCchHHHhHHHHHHHhhhc-ccC
Q 017196 22 SLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNR-AVR 100 (375)
Q Consensus 22 ~~~~~~~~~~~~~l~~~i~~~l~~~g~~~~~~~Q~~~~~~~~~~~~~~~~~ii~a~TGsGKTl~~~l~il~~l~~~-~~~ 100 (375)
..|++++ +++++.+++.+.||..|+|+|..++|.++ .|+|+++.|+||||||++|++|+++.+... ...
T Consensus 29 ~~F~~l~------l~~~ll~~l~~~gf~~pt~IQ~~~IP~~l----~g~Dvi~~A~TGsGKT~Af~lP~l~~l~~~~~~~ 98 (513)
T COG0513 29 PEFASLG------LSPELLQALKDLGFEEPTPIQLAAIPLIL----AGRDVLGQAQTGTGKTAAFLLPLLQKILKSVERK 98 (513)
T ss_pred CCHhhcC------CCHHHHHHHHHcCCCCCCHHHHHHHHHHh----CCCCEEEECCCCChHHHHHHHHHHHHHhcccccC
Confidence 5788888 99999999999999999999999988877 689999999999999999999999998742 222
Q ss_pred CceEEEEcccHHHHHHHHHHHHHhcccc-CceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcCCCcEEEeC
Q 017196 101 CLRALVVLPTRDLALQVKDVFAAIAPAV-GLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVAT 179 (375)
Q Consensus 101 ~~~~lil~Pt~~L~~Q~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiV~T 179 (375)
...+||++||||||.|+++.+..+.... ++++..++||.+...+.. .+..+++|+|||
T Consensus 99 ~~~aLil~PTRELA~Qi~~~~~~~~~~~~~~~~~~i~GG~~~~~q~~---------------------~l~~~~~ivVaT 157 (513)
T COG0513 99 YVSALILAPTRELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRKQIE---------------------ALKRGVDIVVAT 157 (513)
T ss_pred CCceEEECCCHHHHHHHHHHHHHHHhhcCCccEEEEECCCCHHHHHH---------------------HHhcCCCEEEEC
Confidence 1129999999999999999999999988 799999999998877753 455678999999
Q ss_pred cHHHHHHHhhcCCCCCCCccEEEEecchhhhhHhHHhHHHHHHHhhhcccccccccccccccccccccccccccccccCC
Q 017196 180 PGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGF 259 (375)
Q Consensus 180 p~~l~~~l~~~~~~~~~~~~~vIiDE~h~l~~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (375)
|+++++++.+ +.+.++.+.++|+||||+|++.+|...+..|+..++.
T Consensus 158 PGRllD~i~~-~~l~l~~v~~lVlDEADrmLd~Gf~~~i~~I~~~~p~-------------------------------- 204 (513)
T COG0513 158 PGRLLDLIKR-GKLDLSGVETLVLDEADRMLDMGFIDDIEKILKALPP-------------------------------- 204 (513)
T ss_pred ccHHHHHHHc-CCcchhhcCEEEeccHhhhhcCCCHHHHHHHHHhCCc--------------------------------
Confidence 9999999999 4799999999999999999999999999999999887
Q ss_pred CCCCCCceeEEEEEEecCCCchhhhccccCCCeEEecCCccc-cCcccceeEEEeccCCC-cHHHHHHHHHhcCCCeEEE
Q 017196 260 KDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRY-KLPERLESYKLICESKL-KPLYLVALLQSLGEEKCIV 337 (375)
Q Consensus 260 ~~~~~~~~q~i~~SATl~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~i~~~~~~~~~~~-k~~~l~~ll~~~~~~k~lI 337 (375)
+.|+++||||+|+.+..+.+.++.+|..+.+..... .....+.++++.+.... |...|..+++.....++||
T Consensus 205 ------~~qtllfSAT~~~~i~~l~~~~l~~p~~i~v~~~~~~~~~~~i~q~~~~v~~~~~k~~~L~~ll~~~~~~~~IV 278 (513)
T COG0513 205 ------DRQTLLFSATMPDDIRELARRYLNDPVEIEVSVEKLERTLKKIKQFYLEVESEEEKLELLLKLLKDEDEGRVIV 278 (513)
T ss_pred ------ccEEEEEecCCCHHHHHHHHHHccCCcEEEEccccccccccCceEEEEEeCCHHHHHHHHHHHHhcCCCCeEEE
Confidence 678999999999999999999999999888874332 25678999999999776 9999999999988889999
Q ss_pred EcCChhhHHHHHHHHHHhcCCcceEEeccccccccccC
Q 017196 338 FTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRR 375 (375)
Q Consensus 338 F~~s~~~a~~l~~~L~~~g~~~~~~~~lh~~~~~~~R~ 375 (375)
||+|+..|+.++..|...| +.+..+||+|++++|.
T Consensus 279 F~~tk~~~~~l~~~l~~~g---~~~~~lhG~l~q~~R~ 313 (513)
T COG0513 279 FVRTKRLVEELAESLRKRG---FKVAALHGDLPQEERD 313 (513)
T ss_pred EeCcHHHHHHHHHHHHHCC---CeEEEecCCCCHHHHH
Confidence 9999999999999999555 9999999999999984
No 4
>PTZ00110 helicase; Provisional
Probab=100.00 E-value=1.9e-43 Score=352.72 Aligned_cols=289 Identities=25% Similarity=0.355 Sum_probs=247.6
Q ss_pred CcCCCCccCccccCCCCCCCCCCHHHHHHHHhCCCCCccHhhHHHHHHhhCCCCCCCCEEEECCCCCchHHHhHHHHHHH
Q 017196 14 WMRSPVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQT 93 (375)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~l~~~i~~~l~~~g~~~~~~~Q~~~~~~~~~~~~~~~~~ii~a~TGsGKTl~~~l~il~~ 93 (375)
--..|.++.+|++++ +++.+.+++.+.||.+|+++|.++|+.++ +|+|++++||||||||++|++|++..
T Consensus 122 g~~~p~p~~~f~~~~------l~~~l~~~l~~~g~~~pt~iQ~~aip~~l----~G~dvI~~ApTGSGKTlaylLP~l~~ 191 (545)
T PTZ00110 122 GENVPKPVVSFEYTS------FPDYILKSLKNAGFTEPTPIQVQGWPIAL----SGRDMIGIAETGSGKTLAFLLPAIVH 191 (545)
T ss_pred CCCCCcccCCHhhcC------CCHHHHHHHHHCCCCCCCHHHHHHHHHHh----cCCCEEEEeCCCChHHHHHHHHHHHH
Confidence 445688999999998 99999999999999999999999998887 69999999999999999999999988
Q ss_pred hhhcc----cCCceEEEEcccHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhh
Q 017196 94 LSNRA----VRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQEL 169 (375)
Q Consensus 94 l~~~~----~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (375)
+.... ..++.+|||+||++||.|+.+.++.++...++++..++|+.....+. ..+
T Consensus 192 i~~~~~~~~~~gp~~LIL~PTreLa~Qi~~~~~~~~~~~~i~~~~~~gg~~~~~q~---------------------~~l 250 (545)
T PTZ00110 192 INAQPLLRYGDGPIVLVLAPTRELAEQIREQCNKFGASSKIRNTVAYGGVPKRGQI---------------------YAL 250 (545)
T ss_pred HHhcccccCCCCcEEEEECChHHHHHHHHHHHHHHhcccCccEEEEeCCCCHHHHH---------------------HHH
Confidence 76432 24678999999999999999999999988889999999988755443 245
Q ss_pred cCCCcEEEeCcHHHHHHHhhcCCCCCCCccEEEEecchhhhhHhHHhHHHHHHHhhhccccccccccccccccccccccc
Q 017196 170 QSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKT 249 (375)
Q Consensus 170 ~~~~~IiV~Tp~~l~~~l~~~~~~~~~~~~~vIiDE~h~l~~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 249 (375)
..+++|+|+||++|.+++.+ ....++++++||+||||++++.+|...+..++..++.
T Consensus 251 ~~~~~IlVaTPgrL~d~l~~-~~~~l~~v~~lViDEAd~mld~gf~~~i~~il~~~~~---------------------- 307 (545)
T PTZ00110 251 RRGVEILIACPGRLIDFLES-NVTNLRRVTYLVLDEADRMLDMGFEPQIRKIVSQIRP---------------------- 307 (545)
T ss_pred HcCCCEEEECHHHHHHHHHc-CCCChhhCcEEEeehHHhhhhcchHHHHHHHHHhCCC----------------------
Confidence 66789999999999999987 5578899999999999999999999988888887755
Q ss_pred ccccccccCCCCCCCCceeEEEEEEecCCCchhhhccccC-CCeEEecCCccccCcccceeEEEeccCCCcHHHHHHHHH
Q 017196 250 IRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLH-HPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQ 328 (375)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~q~i~~SATl~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~ 328 (375)
+.|++++|||++..+..+...++. .+..+.+..........+++.+..+....|...|..++.
T Consensus 308 ----------------~~q~l~~SAT~p~~v~~l~~~l~~~~~v~i~vg~~~l~~~~~i~q~~~~~~~~~k~~~L~~ll~ 371 (545)
T PTZ00110 308 ----------------DRQTLMWSATWPKEVQSLARDLCKEEPVHVNVGSLDLTACHNIKQEVFVVEEHEKRGKLKMLLQ 371 (545)
T ss_pred ----------------CCeEEEEEeCCCHHHHHHHHHHhccCCEEEEECCCccccCCCeeEEEEEEechhHHHHHHHHHH
Confidence 668999999999888888877775 577776655443344567777777777888888888888
Q ss_pred hc--CCCeEEEEcCChhhHHHHHHHHHHhcCCcceEEeccccccccccC
Q 017196 329 SL--GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRR 375 (375)
Q Consensus 329 ~~--~~~k~lIF~~s~~~a~~l~~~L~~~g~~~~~~~~lh~~~~~~~R~ 375 (375)
.. ...++||||+++++|+.++..|... ++.+..+||+|++++|+
T Consensus 372 ~~~~~~~k~LIF~~t~~~a~~l~~~L~~~---g~~~~~ihg~~~~~eR~ 417 (545)
T PTZ00110 372 RIMRDGDKILIFVETKKGADFLTKELRLD---GWPALCIHGDKKQEERT 417 (545)
T ss_pred HhcccCCeEEEEecChHHHHHHHHHHHHc---CCcEEEEECCCcHHHHH
Confidence 65 4679999999999999999999954 48999999999999884
No 5
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.6e-44 Score=313.43 Aligned_cols=283 Identities=21% Similarity=0.356 Sum_probs=256.7
Q ss_pred CCccCccccCCCCCCCCCCHHHHHHHHhCCCCCccHhhHHHHHHhhCCCCCCCCEEEECCCCCchHHHhHHHHHHHhhhc
Q 017196 18 PVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNR 97 (375)
Q Consensus 18 ~~~~~~~~~~~~~~~~~l~~~i~~~l~~~g~~~~~~~Q~~~~~~~~~~~~~~~~~ii~a~TGsGKTl~~~l~il~~l~~~ 97 (375)
..+..+|++.+ |.+++++.+...||++|+.+|++|++.++ +|+|++.+|..|+|||.+|.+.+++.+.-.
T Consensus 23 ~~v~~~F~~Mg------l~edlLrgiY~yGfekPS~IQqrAi~~Il----kGrdViaQaqSGTGKTa~~si~vlq~~d~~ 92 (400)
T KOG0328|consen 23 VKVIPTFDDMG------LKEDLLRGIYAYGFEKPSAIQQRAIPQIL----KGRDVIAQAQSGTGKTATFSISVLQSLDIS 92 (400)
T ss_pred cccccchhhcC------chHHHHHHHHHhccCCchHHHhhhhhhhh----cccceEEEecCCCCceEEEEeeeeeecccc
Confidence 44667888888 99999999999999999999999987777 799999999999999999999999888765
Q ss_pred ccCCceEEEEcccHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcCCCcEEE
Q 017196 98 AVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILV 177 (375)
Q Consensus 98 ~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiV 177 (375)
. +..+++|+.|||||+-|+.+.+.+++...++++....||.+..+..+ ++..|.+++.
T Consensus 93 ~-r~tQ~lilsPTRELa~Qi~~vi~alg~~mnvq~hacigg~n~gedik---------------------kld~G~hvVs 150 (400)
T KOG0328|consen 93 V-RETQALILSPTRELAVQIQKVILALGDYMNVQCHACIGGKNLGEDIK---------------------KLDYGQHVVS 150 (400)
T ss_pred c-ceeeEEEecChHHHHHHHHHHHHHhcccccceEEEEecCCccchhhh---------------------hhcccceEee
Confidence 3 44689999999999999999999999999999999999998776654 6678899999
Q ss_pred eCcHHHHHHHhhcCCCCCCCccEEEEecchhhhhHhHHhHHHHHHHhhhccccccccccccccccccccccccccccccc
Q 017196 178 ATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVER 257 (375)
Q Consensus 178 ~Tp~~l~~~l~~~~~~~~~~~~~vIiDE~h~l~~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (375)
|||+++++++++ +.+.-+.++++|+||+|.|++.+|...+-.++.++|+
T Consensus 151 GtPGrv~dmikr-~~L~tr~vkmlVLDEaDemL~kgfk~Qiydiyr~lp~------------------------------ 199 (400)
T KOG0328|consen 151 GTPGRVLDMIKR-RSLRTRAVKMLVLDEADEMLNKGFKEQIYDIYRYLPP------------------------------ 199 (400)
T ss_pred CCCchHHHHHHh-ccccccceeEEEeccHHHHHHhhHHHHHHHHHHhCCC------------------------------
Confidence 999999999998 7788999999999999999999999999999999988
Q ss_pred CCCCCCCCceeEEEEEEecCCCchhhhccccCCCeEEecCCccccCcccceeEEEeccCCC-cHHHHHHHHHhcCCCeEE
Q 017196 258 GFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKL-KPLYLVALLQSLGEEKCI 336 (375)
Q Consensus 258 ~~~~~~~~~~q~i~~SATl~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~-k~~~l~~ll~~~~~~k~l 336 (375)
..|++++|||+|.++.+...+|+.+|+.+-+...+..+ ..++++++.++.++ |.+.|.++...+.-.+++
T Consensus 200 --------~~Qvv~~SATlp~eilemt~kfmtdpvrilvkrdeltl-EgIKqf~v~ve~EewKfdtLcdLYd~LtItQav 270 (400)
T KOG0328|consen 200 --------GAQVVLVSATLPHEILEMTEKFMTDPVRILVKRDELTL-EGIKQFFVAVEKEEWKFDTLCDLYDTLTITQAV 270 (400)
T ss_pred --------CceEEEEeccCcHHHHHHHHHhcCCceeEEEecCCCch-hhhhhheeeechhhhhHhHHHHHhhhhehheEE
Confidence 77999999999999999999999999999988776332 45899998888766 999999999999888999
Q ss_pred EEcCChhhHHHHHHHHHHhcCCcceEEeccccccccccC
Q 017196 337 VFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRR 375 (375)
Q Consensus 337 IF~~s~~~a~~l~~~L~~~g~~~~~~~~lh~~~~~~~R~ 375 (375)
|||||+..++.+.+.+. +.++.|.++||+|++++|+
T Consensus 271 IFcnTk~kVdwLtekm~---~~nftVssmHGDm~qkERd 306 (400)
T KOG0328|consen 271 IFCNTKRKVDWLTEKMR---EANFTVSSMHGDMEQKERD 306 (400)
T ss_pred EEecccchhhHHHHHHH---hhCceeeeccCCcchhHHH
Confidence 99999999999999999 5559999999999999995
No 6
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=8.8e-43 Score=340.03 Aligned_cols=285 Identities=26% Similarity=0.372 Sum_probs=242.7
Q ss_pred CccCccccCCCCCCCCCCHHHHHHHHhCCCCCccHhhHHHHHHhhCCCCCCCCEEEECCCCCchHHHhHHHHHHHhhhcc
Q 017196 19 VDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRA 98 (375)
Q Consensus 19 ~~~~~~~~~~~~~~~~l~~~i~~~l~~~g~~~~~~~Q~~~~~~~~~~~~~~~~~ii~a~TGsGKTl~~~l~il~~l~~~~ 98 (375)
.....|++++ |++.+.+++...||..|+++|.+||+.++ .|+|++++||||||||++|++|+++.+....
T Consensus 5 ~~~~~f~~~~------l~~~l~~~l~~~g~~~pt~iQ~~aip~il----~g~dvi~~ApTGsGKTla~llp~l~~l~~~~ 74 (423)
T PRK04837 5 LTEQKFSDFA------LHPQVVEALEKKGFHNCTPIQALALPLTL----AGRDVAGQAQTGTGKTMAFLTATFHYLLSHP 74 (423)
T ss_pred CCCCCHhhCC------CCHHHHHHHHHCCCCCCCHHHHHHHHHHh----CCCcEEEECCCCchHHHHHHHHHHHHHHhcc
Confidence 3346788888 99999999999999999999999998877 6999999999999999999999999886532
Q ss_pred ------cCCceEEEEcccHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcCC
Q 017196 99 ------VRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSA 172 (375)
Q Consensus 99 ------~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (375)
..++++|||+||++||.|+++.+..+....++++..++|+.....+. +.+..+
T Consensus 75 ~~~~~~~~~~~~lil~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~---------------------~~l~~~ 133 (423)
T PRK04837 75 APEDRKVNQPRALIMAPTRELAVQIHADAEPLAQATGLKLGLAYGGDGYDKQL---------------------KVLESG 133 (423)
T ss_pred cccccccCCceEEEECCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHH---------------------HHhcCC
Confidence 23478999999999999999999999998899999999987655443 245667
Q ss_pred CcEEEeCcHHHHHHHhhcCCCCCCCccEEEEecchhhhhHhHHhHHHHHHHhhhcccccccccccccccccccccccccc
Q 017196 173 VDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRR 252 (375)
Q Consensus 173 ~~IiV~Tp~~l~~~l~~~~~~~~~~~~~vIiDE~h~l~~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (375)
++|+|+||+++.+++.+ ..+.++.+++||+||||++++.+|...+..++..++...
T Consensus 134 ~~IlV~TP~~l~~~l~~-~~~~l~~v~~lViDEad~l~~~~f~~~i~~i~~~~~~~~----------------------- 189 (423)
T PRK04837 134 VDILIGTTGRLIDYAKQ-NHINLGAIQVVVLDEADRMFDLGFIKDIRWLFRRMPPAN----------------------- 189 (423)
T ss_pred CCEEEECHHHHHHHHHc-CCcccccccEEEEecHHHHhhcccHHHHHHHHHhCCCcc-----------------------
Confidence 89999999999999987 568899999999999999999999888888887776422
Q ss_pred cccccCCCCCCCCceeEEEEEEecCCCchhhhccccCCCeEEecCCccccCcccceeEEEeccCCCcHHHHHHHHHhcCC
Q 017196 253 CGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGE 332 (375)
Q Consensus 253 ~~~~~~~~~~~~~~~q~i~~SATl~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~ 332 (375)
..|.+++|||++..+..+....+.++..+.+.... .....+++.+.......|...+..++.....
T Consensus 190 -------------~~~~~l~SAT~~~~~~~~~~~~~~~p~~i~v~~~~-~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~ 255 (423)
T PRK04837 190 -------------QRLNMLFSATLSYRVRELAFEHMNNPEYVEVEPEQ-KTGHRIKEELFYPSNEEKMRLLQTLIEEEWP 255 (423)
T ss_pred -------------ceeEEEEeccCCHHHHHHHHHHCCCCEEEEEcCCC-cCCCceeEEEEeCCHHHHHHHHHHHHHhcCC
Confidence 34679999999988888888888888888766544 2334566766677777888889999988777
Q ss_pred CeEEEEcCChhhHHHHHHHHHHhcCCcceEEeccccccccccC
Q 017196 333 EKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRR 375 (375)
Q Consensus 333 ~k~lIF~~s~~~a~~l~~~L~~~g~~~~~~~~lh~~~~~~~R~ 375 (375)
.++||||+++..|+.+++.|... |+.+..+||+|++++|.
T Consensus 256 ~~~lVF~~t~~~~~~l~~~L~~~---g~~v~~lhg~~~~~~R~ 295 (423)
T PRK04837 256 DRAIIFANTKHRCEEIWGHLAAD---GHRVGLLTGDVAQKKRL 295 (423)
T ss_pred CeEEEEECCHHHHHHHHHHHHhC---CCcEEEecCCCChhHHH
Confidence 89999999999999999999954 49999999999999883
No 7
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.4e-43 Score=329.06 Aligned_cols=279 Identities=33% Similarity=0.506 Sum_probs=247.5
Q ss_pred ccccCCCCCCCCCCHHHHHHHHhCCCCCccHhhHHHHHHhhCCCCCCCCEEEECCCCCchHHHhHHHHHHHhhhccc--C
Q 017196 23 LFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAV--R 100 (375)
Q Consensus 23 ~~~~~~~~~~~~l~~~i~~~l~~~g~~~~~~~Q~~~~~~~~~~~~~~~~~ii~a~TGsGKTl~~~l~il~~l~~~~~--~ 100 (375)
+|.++. |+..++.++..+||..|+|+|..++|-.+ .|+|++-||.||||||.||++|+++++...+. .
T Consensus 182 sF~~mN------LSRPlLka~~~lGy~~PTpIQ~a~IPval----lgkDIca~A~TGsGKTAAF~lPiLERLlYrPk~~~ 251 (691)
T KOG0338|consen 182 SFQSMN------LSRPLLKACSTLGYKKPTPIQVATIPVAL----LGKDICACAATGSGKTAAFALPILERLLYRPKKVA 251 (691)
T ss_pred hHHhcc------cchHHHHHHHhcCCCCCCchhhhcccHHh----hcchhhheecccCCchhhhHHHHHHHHhcCcccCc
Confidence 566666 99999999999999999999999866544 79999999999999999999999999987653 3
Q ss_pred CceEEEEcccHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcCCCcEEEeCc
Q 017196 101 CLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATP 180 (375)
Q Consensus 101 ~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiV~Tp 180 (375)
..|+|||+|||+|+.|+++..++++...++.++++.||.+...+.. .+..++||+|+||
T Consensus 252 ~TRVLVL~PTRELaiQv~sV~~qlaqFt~I~~~L~vGGL~lk~QE~---------------------~LRs~PDIVIATP 310 (691)
T KOG0338|consen 252 ATRVLVLVPTRELAIQVHSVTKQLAQFTDITVGLAVGGLDLKAQEA---------------------VLRSRPDIVIATP 310 (691)
T ss_pred ceeEEEEeccHHHHHHHHHHHHHHHhhccceeeeeecCccHHHHHH---------------------HHhhCCCEEEecc
Confidence 4589999999999999999999999999999999999998877754 5677889999999
Q ss_pred HHHHHHHhhcCCCCCCCccEEEEecchhhhhHhHHhHHHHHHHhhhcccccccccccccccccccccccccccccccCCC
Q 017196 181 GRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFK 260 (375)
Q Consensus 181 ~~l~~~l~~~~~~~~~~~~~vIiDE~h~l~~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (375)
++|.++++++.+|.+.++.++|+||||+|++.+|...+..|+..++.
T Consensus 311 GRlIDHlrNs~sf~ldsiEVLvlDEADRMLeegFademnEii~lcpk--------------------------------- 357 (691)
T KOG0338|consen 311 GRLIDHLRNSPSFNLDSIEVLVLDEADRMLEEGFADEMNEIIRLCPK--------------------------------- 357 (691)
T ss_pred hhHHHHhccCCCccccceeEEEechHHHHHHHHHHHHHHHHHHhccc---------------------------------
Confidence 99999999999999999999999999999999999999999999998
Q ss_pred CCCCCceeEEEEEEecCCCchhhhccccCCCeEEecCCccccCcccceeEEEec---cCCCcHHHHHHHHHhcCCCeEEE
Q 017196 261 DKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLIC---ESKLKPLYLVALLQSLGEEKCIV 337 (375)
Q Consensus 261 ~~~~~~~q~i~~SATl~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~~~~~---~~~~k~~~l~~ll~~~~~~k~lI 337 (375)
+.|.++||||+++.+..++..-+.+|+.+.++..... +..+.+.|+-. .+..+..++..++.+....+++|
T Consensus 358 -----~RQTmLFSATMteeVkdL~slSL~kPvrifvd~~~~~-a~~LtQEFiRIR~~re~dRea~l~~l~~rtf~~~~iv 431 (691)
T KOG0338|consen 358 -----NRQTMLFSATMTEEVKDLASLSLNKPVRIFVDPNKDT-APKLTQEFIRIRPKREGDREAMLASLITRTFQDRTIV 431 (691)
T ss_pred -----cccceeehhhhHHHHHHHHHhhcCCCeEEEeCCcccc-chhhhHHHheeccccccccHHHHHHHHHHhcccceEE
Confidence 7788999999999999999999999999999887643 33444433332 24567888889999888889999
Q ss_pred EcCChhhHHHHHHHHHHhcCCcceEEecccccccccc
Q 017196 338 FTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVR 374 (375)
Q Consensus 338 F~~s~~~a~~l~~~L~~~g~~~~~~~~lh~~~~~~~R 374 (375)
|+.|++.|+.+.-.|-- .|+.+..+||.+++.||
T Consensus 432 Fv~tKk~AHRl~IllGL---lgl~agElHGsLtQ~QR 465 (691)
T KOG0338|consen 432 FVRTKKQAHRLRILLGL---LGLKAGELHGSLTQEQR 465 (691)
T ss_pred EEehHHHHHHHHHHHHH---hhchhhhhcccccHHHH
Confidence 99999999999998874 45999999999999998
No 8
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=2.8e-42 Score=345.43 Aligned_cols=287 Identities=24% Similarity=0.349 Sum_probs=242.8
Q ss_pred CCccCccccCCCCCCCCCCHHHHHHHHhCCCCCccHhhHHHHHHhhCCCCCCCCEEEECCCCCchHHHhHHHHHHHhhhc
Q 017196 18 PVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNR 97 (375)
Q Consensus 18 ~~~~~~~~~~~~~~~~~l~~~i~~~l~~~g~~~~~~~Q~~~~~~~~~~~~~~~~~ii~a~TGsGKTl~~~l~il~~l~~~ 97 (375)
|....+|++++ |++.++++|.+.||..|+|+|.++|+.++ .|+|++++||||||||++|++|+++.+...
T Consensus 5 ~~~~~~f~~l~------l~~~l~~~L~~~g~~~ptpiQ~~~ip~~l----~G~Dvi~~ApTGSGKTlafllpil~~l~~~ 74 (572)
T PRK04537 5 PLTDLTFSSFD------LHPALLAGLESAGFTRCTPIQALTLPVAL----PGGDVAGQAQTGTGKTLAFLVAVMNRLLSR 74 (572)
T ss_pred ccCCCChhhcC------CCHHHHHHHHHCCCCCCCHHHHHHHHHHh----CCCCEEEEcCCCCcHHHHHHHHHHHHHHhc
Confidence 33334688888 99999999999999999999999998877 699999999999999999999999988643
Q ss_pred c------cCCceEEEEcccHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcC
Q 017196 98 A------VRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQS 171 (375)
Q Consensus 98 ~------~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (375)
. ...+++|||+||++||.|+++.++.++...++++..++|+.....+.. .+..
T Consensus 75 ~~~~~~~~~~~raLIl~PTreLa~Qi~~~~~~l~~~~~i~v~~l~Gg~~~~~q~~---------------------~l~~ 133 (572)
T PRK04537 75 PALADRKPEDPRALILAPTRELAIQIHKDAVKFGADLGLRFALVYGGVDYDKQRE---------------------LLQQ 133 (572)
T ss_pred ccccccccCCceEEEEeCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHH---------------------HHhC
Confidence 1 124689999999999999999999999988999999999987655532 4456
Q ss_pred CCcEEEeCcHHHHHHHhhcCCCCCCCccEEEEecchhhhhHhHHhHHHHHHHhhhccccccccccccccccccccccccc
Q 017196 172 AVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIR 251 (375)
Q Consensus 172 ~~~IiV~Tp~~l~~~l~~~~~~~~~~~~~vIiDE~h~l~~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (375)
+++|+|+||++|.+++.+...+.+..+++|||||||++++.+|...+..++..++...
T Consensus 134 ~~dIiV~TP~rL~~~l~~~~~~~l~~v~~lViDEAh~lld~gf~~~i~~il~~lp~~~---------------------- 191 (572)
T PRK04537 134 GVDVIIATPGRLIDYVKQHKVVSLHACEICVLDEADRMFDLGFIKDIRFLLRRMPERG---------------------- 191 (572)
T ss_pred CCCEEEECHHHHHHHHHhccccchhheeeeEecCHHHHhhcchHHHHHHHHHhccccc----------------------
Confidence 7899999999999999875557788999999999999999999888888887776421
Q ss_pred ccccccCCCCCCCCceeEEEEEEecCCCchhhhccccCCCeEEecCCccccCcccceeEEEeccCCCcHHHHHHHHHhcC
Q 017196 252 RCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLG 331 (375)
Q Consensus 252 ~~~~~~~~~~~~~~~~q~i~~SATl~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~ 331 (375)
..|+++||||++..+..+...++.++..+.+.... .....+.+.++.+....|...+..++....
T Consensus 192 --------------~~q~ll~SATl~~~v~~l~~~~l~~p~~i~v~~~~-~~~~~i~q~~~~~~~~~k~~~L~~ll~~~~ 256 (572)
T PRK04537 192 --------------TRQTLLFSATLSHRVLELAYEHMNEPEKLVVETET-ITAARVRQRIYFPADEEKQTLLLGLLSRSE 256 (572)
T ss_pred --------------CceEEEEeCCccHHHHHHHHHHhcCCcEEEecccc-ccccceeEEEEecCHHHHHHHHHHHHhccc
Confidence 45899999999998888888888877766655443 233456777777777888888999888877
Q ss_pred CCeEEEEcCChhhHHHHHHHHHHhcCCcceEEeccccccccccC
Q 017196 332 EEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRR 375 (375)
Q Consensus 332 ~~k~lIF~~s~~~a~~l~~~L~~~g~~~~~~~~lh~~~~~~~R~ 375 (375)
..++||||++++.|+.+++.|... ++.+..+||+|++.+|.
T Consensus 257 ~~k~LVF~nt~~~ae~l~~~L~~~---g~~v~~lhg~l~~~eR~ 297 (572)
T PRK04537 257 GARTMVFVNTKAFVERVARTLERH---GYRVGVLSGDVPQKKRE 297 (572)
T ss_pred CCcEEEEeCCHHHHHHHHHHHHHc---CCCEEEEeCCCCHHHHH
Confidence 889999999999999999999954 48999999999998873
No 9
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=100.00 E-value=2.9e-42 Score=339.91 Aligned_cols=278 Identities=26% Similarity=0.381 Sum_probs=243.3
Q ss_pred CccccCCCCCCCCCCHHHHHHHHhCCCCCccHhhHHHHHHhhCCCCCCCCEEEECCCCCchHHHhHHHHHHHhhhcccCC
Q 017196 22 SLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRC 101 (375)
Q Consensus 22 ~~~~~~~~~~~~~l~~~i~~~l~~~g~~~~~~~Q~~~~~~~~~~~~~~~~~ii~a~TGsGKTl~~~l~il~~l~~~~~~~ 101 (375)
.+|++++ +++.+.+++.++||.+|+|+|.+|++.++ .|+|++++||||||||++|++|+++.+.... ..
T Consensus 4 ~~f~~l~------l~~~l~~~l~~~g~~~~t~iQ~~ai~~~l----~g~dvi~~a~TGsGKT~a~~lpil~~l~~~~-~~ 72 (460)
T PRK11776 4 TAFSTLP------LPPALLANLNELGYTEMTPIQAQSLPAIL----AGKDVIAQAKTGSGKTAAFGLGLLQKLDVKR-FR 72 (460)
T ss_pred CChhhcC------CCHHHHHHHHHCCCCCCCHHHHHHHHHHh----cCCCEEEECCCCCcHHHHHHHHHHHHhhhcc-CC
Confidence 4688888 99999999999999999999999998877 6899999999999999999999999986542 35
Q ss_pred ceEEEEcccHHHHHHHHHHHHHhcccc-CceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcCCCcEEEeCc
Q 017196 102 LRALVVLPTRDLALQVKDVFAAIAPAV-GLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATP 180 (375)
Q Consensus 102 ~~~lil~Pt~~L~~Q~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiV~Tp 180 (375)
+++||++||++||.|+.+.++.++... ++++..++|+.+...+.. .+..+++|+|+||
T Consensus 73 ~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~v~~~~Gg~~~~~~~~---------------------~l~~~~~IvV~Tp 131 (460)
T PRK11776 73 VQALVLCPTRELADQVAKEIRRLARFIPNIKVLTLCGGVPMGPQID---------------------SLEHGAHIIVGTP 131 (460)
T ss_pred ceEEEEeCCHHHHHHHHHHHHHHHhhCCCcEEEEEECCCChHHHHH---------------------HhcCCCCEEEECh
Confidence 589999999999999999999987654 689999999987655533 4556789999999
Q ss_pred HHHHHHHhhcCCCCCCCccEEEEecchhhhhHhHHhHHHHHHHhhhcccccccccccccccccccccccccccccccCCC
Q 017196 181 GRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFK 260 (375)
Q Consensus 181 ~~l~~~l~~~~~~~~~~~~~vIiDE~h~l~~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (375)
+++.+++.+ +.+.++++++||+||||++++.+|...+..++..++.
T Consensus 132 ~rl~~~l~~-~~~~l~~l~~lViDEad~~l~~g~~~~l~~i~~~~~~--------------------------------- 177 (460)
T PRK11776 132 GRILDHLRK-GTLDLDALNTLVLDEADRMLDMGFQDAIDAIIRQAPA--------------------------------- 177 (460)
T ss_pred HHHHHHHHc-CCccHHHCCEEEEECHHHHhCcCcHHHHHHHHHhCCc---------------------------------
Confidence 999999987 5678899999999999999999998888888888766
Q ss_pred CCCCCceeEEEEEEecCCCchhhhccccCCCeEEecCCccccCcccceeEEEeccCCCcHHHHHHHHHhcCCCeEEEEcC
Q 017196 261 DKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTS 340 (375)
Q Consensus 261 ~~~~~~~q~i~~SATl~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~k~lIF~~ 340 (375)
..|++++|||++..+..+...++.++..+.+.... ....+.++++.++...|...+..++......++||||+
T Consensus 178 -----~~q~ll~SAT~~~~~~~l~~~~~~~~~~i~~~~~~--~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~lVF~~ 250 (460)
T PRK11776 178 -----RRQTLLFSATYPEGIAAISQRFQRDPVEVKVESTH--DLPAIEQRFYEVSPDERLPALQRLLLHHQPESCVVFCN 250 (460)
T ss_pred -----ccEEEEEEecCcHHHHHHHHHhcCCCEEEEECcCC--CCCCeeEEEEEeCcHHHHHHHHHHHHhcCCCceEEEEC
Confidence 66899999999999999999999999888776543 23457888888888889999999998888889999999
Q ss_pred ChhhHHHHHHHHHHhcCCcceEEeccccccccccC
Q 017196 341 SVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRR 375 (375)
Q Consensus 341 s~~~a~~l~~~L~~~g~~~~~~~~lh~~~~~~~R~ 375 (375)
++++|+.+++.|... ++.+..+||+|++.+|+
T Consensus 251 t~~~~~~l~~~L~~~---~~~v~~~hg~~~~~eR~ 282 (460)
T PRK11776 251 TKKECQEVADALNAQ---GFSALALHGDLEQRDRD 282 (460)
T ss_pred CHHHHHHHHHHHHhC---CCcEEEEeCCCCHHHHH
Confidence 999999999999954 49999999999999884
No 10
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=100.00 E-value=4.3e-42 Score=337.60 Aligned_cols=279 Identities=28% Similarity=0.412 Sum_probs=239.2
Q ss_pred ccccCCCCCCCCCCHHHHHHHHhCCCCCccHhhHHHHHHhhCCCCCCCCEEEECCCCCchHHHhHHHHHHHhhhcc----
Q 017196 23 LFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRA---- 98 (375)
Q Consensus 23 ~~~~~~~~~~~~l~~~i~~~l~~~g~~~~~~~Q~~~~~~~~~~~~~~~~~ii~a~TGsGKTl~~~l~il~~l~~~~---- 98 (375)
+|++++ |++++.+++.+.||..|+++|.++++.++ .|+|++++||||||||++|++|+++.+....
T Consensus 2 ~f~~l~------l~~~l~~~l~~~g~~~pt~iQ~~ai~~il----~g~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~ 71 (456)
T PRK10590 2 SFDSLG------LSPDILRAVAEQGYREPTPIQQQAIPAVL----EGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAK 71 (456)
T ss_pred CHHHcC------CCHHHHHHHHHCCCCCCCHHHHHHHHHHh----CCCCEEEECCCCCcHHHHHHHHHHHHhhhcccccc
Confidence 577888 99999999999999999999999998877 6899999999999999999999999986532
Q ss_pred -cCCceEEEEcccHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcCCCcEEE
Q 017196 99 -VRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILV 177 (375)
Q Consensus 99 -~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiV 177 (375)
...+++|||+||++||.|+.+.++.+....++.+..++|+.+...+.. .+..+++|+|
T Consensus 72 ~~~~~~aLil~PtreLa~Qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~---------------------~l~~~~~IiV 130 (456)
T PRK10590 72 GRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMM---------------------KLRGGVDVLV 130 (456)
T ss_pred cCCCceEEEEeCcHHHHHHHHHHHHHHhccCCCEEEEEECCcCHHHHHH---------------------HHcCCCcEEE
Confidence 123579999999999999999999999888999999999987655532 4566789999
Q ss_pred eCcHHHHHHHhhcCCCCCCCccEEEEecchhhhhHhHHhHHHHHHHhhhccccccccccccccccccccccccccccccc
Q 017196 178 ATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVER 257 (375)
Q Consensus 178 ~Tp~~l~~~l~~~~~~~~~~~~~vIiDE~h~l~~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (375)
+||++|.+++.. ..+.++.+++|||||||++++.+|...+..++..++.
T Consensus 131 ~TP~rL~~~~~~-~~~~l~~v~~lViDEah~ll~~~~~~~i~~il~~l~~------------------------------ 179 (456)
T PRK10590 131 ATPGRLLDLEHQ-NAVKLDQVEILVLDEADRMLDMGFIHDIRRVLAKLPA------------------------------ 179 (456)
T ss_pred EChHHHHHHHHc-CCcccccceEEEeecHHHHhccccHHHHHHHHHhCCc------------------------------
Confidence 999999999877 5578999999999999999999888888888877665
Q ss_pred CCCCCCCCceeEEEEEEecCCCchhhhccccCCCeEEecCCccccCcccceeEEEeccCCCcHHHHHHHHHhcCCCeEEE
Q 017196 258 GFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIV 337 (375)
Q Consensus 258 ~~~~~~~~~~q~i~~SATl~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~k~lI 337 (375)
..|.++||||++..+..+...++.++..+.+.... .....+.+.+..++...+...+..++......++||
T Consensus 180 --------~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~-~~~~~i~~~~~~~~~~~k~~~l~~l~~~~~~~~~lV 250 (456)
T PRK10590 180 --------KRQNLLFSATFSDDIKALAEKLLHNPLEIEVARRN-TASEQVTQHVHFVDKKRKRELLSQMIGKGNWQQVLV 250 (456)
T ss_pred --------cCeEEEEeCCCcHHHHHHHHHHcCCCeEEEEeccc-ccccceeEEEEEcCHHHHHHHHHHHHHcCCCCcEEE
Confidence 56899999999988888888888888877665443 234567777777777778888888888777789999
Q ss_pred EcCChhhHHHHHHHHHHhcCCcceEEeccccccccccC
Q 017196 338 FTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRR 375 (375)
Q Consensus 338 F~~s~~~a~~l~~~L~~~g~~~~~~~~lh~~~~~~~R~ 375 (375)
||+++.+|+.+++.|... ++.+..+||+|++.+|.
T Consensus 251 F~~t~~~~~~l~~~L~~~---g~~~~~lhg~~~~~~R~ 285 (456)
T PRK10590 251 FTRTKHGANHLAEQLNKD---GIRSAAIHGNKSQGART 285 (456)
T ss_pred EcCcHHHHHHHHHHHHHC---CCCEEEEECCCCHHHHH
Confidence 999999999999999954 48999999999998873
No 11
>KOG0346 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=4.1e-43 Score=320.97 Aligned_cols=281 Identities=30% Similarity=0.397 Sum_probs=246.8
Q ss_pred CccccCCCCCCCCCCHHHHHHHHhCCCCCccHhhHHHHHHhhCCCCCCCCEEEECCCCCchHHHhHHHHHHHhhhcc---
Q 017196 22 SLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRA--- 98 (375)
Q Consensus 22 ~~~~~~~~~~~~~l~~~i~~~l~~~g~~~~~~~Q~~~~~~~~~~~~~~~~~ii~a~TGsGKTl~~~l~il~~l~~~~--- 98 (375)
..|++++ |++.+++++.+.||+.|+-+|+.|++-++ +|+|++..|.||||||.||++|+++.+....
T Consensus 19 ktFe~~g------LD~RllkAi~~lG~ekpTlIQs~aIplaL----EgKDvvarArTGSGKT~AYliPllqkll~~k~t~ 88 (569)
T KOG0346|consen 19 KTFEEFG------LDSRLLKAITKLGWEKPTLIQSSAIPLAL----EGKDVVARARTGSGKTAAYLIPLLQKLLAEKKTN 88 (569)
T ss_pred ccHHHhC------CCHHHHHHHHHhCcCCcchhhhcccchhh----cCcceeeeeccCCCchHHHHHHHHHHHHHhhhcc
Confidence 6889999 99999999999999999999999966555 7999999999999999999999999986642
Q ss_pred --cCCceEEEEcccHHHHHHHHHHHHHhccccC--ceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcCCCc
Q 017196 99 --VRCLRALVVLPTRDLALQVKDVFAAIAPAVG--LSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVD 174 (375)
Q Consensus 99 --~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~--~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (375)
..++.++|++||+|||+|+|..+.++...++ +++..+.++.+.... .-.+.+.++
T Consensus 89 ~~e~~~sa~iLvPTkEL~qQvy~viekL~~~c~k~lr~~nl~s~~sdsv~---------------------~~~L~d~pd 147 (569)
T KOG0346|consen 89 DGEQGPSAVILVPTKELAQQVYKVIEKLVEYCSKDLRAINLASSMSDSVN---------------------SVALMDLPD 147 (569)
T ss_pred cccccceeEEEechHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccchHHH---------------------HHHHccCCC
Confidence 3467899999999999999999999877664 555555544332222 235677889
Q ss_pred EEEeCcHHHHHHHhhcCCCCCCCccEEEEecchhhhhHhHHhHHHHHHHhhhcccccccccccccccccccccccccccc
Q 017196 175 ILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCG 254 (375)
Q Consensus 175 IiV~Tp~~l~~~l~~~~~~~~~~~~~vIiDE~h~l~~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (375)
|+|+||++++.++.......+..+.++|+||||.++..+|.+.+..+..++|+
T Consensus 148 IvV~TP~~ll~~~~~~~~~~~~~l~~LVvDEADLllsfGYeedlk~l~~~LPr--------------------------- 200 (569)
T KOG0346|consen 148 IVVATPAKLLRHLAAGVLEYLDSLSFLVVDEADLLLSFGYEEDLKKLRSHLPR--------------------------- 200 (569)
T ss_pred eEEeChHHHHHHHhhccchhhhheeeEEechhhhhhhcccHHHHHHHHHhCCc---------------------------
Confidence 99999999999998844466889999999999999999999999999999987
Q ss_pred cccCCCCCCCCceeEEEEEEecCCCchhhhccccCCCeEEecCCccccCcccceeEEEeccCCCcHHHHHHHHHh-cCCC
Q 017196 255 VERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQS-LGEE 333 (375)
Q Consensus 255 ~~~~~~~~~~~~~q~i~~SATl~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~-~~~~ 333 (375)
.+|.++||||+.+++..+.+.++++|+.+.+.+.+...++.+.++.+.|++.+|...++.+++- .-.+
T Consensus 201 -----------~~Q~~LmSATl~dDv~~LKkL~l~nPviLkl~e~el~~~dqL~Qy~v~cse~DKflllyallKL~LI~g 269 (569)
T KOG0346|consen 201 -----------IYQCFLMSATLSDDVQALKKLFLHNPVILKLTEGELPNPDQLTQYQVKCSEEDKFLLLYALLKLRLIRG 269 (569)
T ss_pred -----------hhhheeehhhhhhHHHHHHHHhccCCeEEEeccccCCCcccceEEEEEeccchhHHHHHHHHHHHHhcC
Confidence 7889999999999999999999999999999988877889999999999999999999999884 4567
Q ss_pred eEEEEcCChhhHHHHHHHHHHhcCCcceEEecccccccccc
Q 017196 334 KCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVR 374 (375)
Q Consensus 334 k~lIF~~s~~~a~~l~~~L~~~g~~~~~~~~lh~~~~~~~R 374 (375)
+.|||+|++++|.++.-+|..+| ++..++.|+||..-|
T Consensus 270 KsliFVNtIdr~YrLkLfLeqFG---iksciLNseLP~NSR 307 (569)
T KOG0346|consen 270 KSLIFVNTIDRCYRLKLFLEQFG---IKSCILNSELPANSR 307 (569)
T ss_pred ceEEEEechhhhHHHHHHHHHhC---cHhhhhcccccccch
Confidence 99999999999999999999766 999999999998766
No 12
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=100.00 E-value=1.5e-41 Score=342.23 Aligned_cols=280 Identities=24% Similarity=0.345 Sum_probs=242.4
Q ss_pred cCccccCCCCCCCCCCHHHHHHHHhCCCCCccHhhHHHHHHhhCCCCCCCCEEEECCCCCchHHHhHHHHHHHhhhcccC
Q 017196 21 VSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVR 100 (375)
Q Consensus 21 ~~~~~~~~~~~~~~l~~~i~~~l~~~g~~~~~~~Q~~~~~~~~~~~~~~~~~ii~a~TGsGKTl~~~l~il~~l~~~~~~ 100 (375)
..+|++++ |++.+.+++.+.||.+|+|+|.++++.++ .|+|++++||||||||++|++|+++.+... ..
T Consensus 5 ~~~f~~l~------L~~~ll~al~~~G~~~ptpiQ~~ai~~ll----~g~dvl~~ApTGsGKT~af~lpll~~l~~~-~~ 73 (629)
T PRK11634 5 ETTFADLG------LKAPILEALNDLGYEKPSPIQAECIPHLL----NGRDVLGMAQTGSGKTAAFSLPLLHNLDPE-LK 73 (629)
T ss_pred cCCHhhcC------CCHHHHHHHHHCCCCCCCHHHHHHHHHHH----cCCCEEEEcCCCCcHHHHHHHHHHHHhhhc-cC
Confidence 34688888 99999999999999999999999998877 689999999999999999999999988654 34
Q ss_pred CceEEEEcccHHHHHHHHHHHHHhcccc-CceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcCCCcEEEeC
Q 017196 101 CLRALVVLPTRDLALQVKDVFAAIAPAV-GLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVAT 179 (375)
Q Consensus 101 ~~~~lil~Pt~~L~~Q~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiV~T 179 (375)
.+++|||+||++||.|+.+.++.+.... ++++..++|+..+..+.. .+..+++|+|+|
T Consensus 74 ~~~~LIL~PTreLa~Qv~~~l~~~~~~~~~i~v~~~~gG~~~~~q~~---------------------~l~~~~~IVVgT 132 (629)
T PRK11634 74 APQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLR---------------------ALRQGPQIVVGT 132 (629)
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEECCcCHHHHHH---------------------HhcCCCCEEEEC
Confidence 5689999999999999999999887655 789999999987655533 456778999999
Q ss_pred cHHHHHHHhhcCCCCCCCccEEEEecchhhhhHhHHhHHHHHHHhhhcccccccccccccccccccccccccccccccCC
Q 017196 180 PGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGF 259 (375)
Q Consensus 180 p~~l~~~l~~~~~~~~~~~~~vIiDE~h~l~~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (375)
|+++.+++.+ ..+.++++++||+||||++++.+|...+..++..++.
T Consensus 133 Pgrl~d~l~r-~~l~l~~l~~lVlDEAd~ml~~gf~~di~~Il~~lp~-------------------------------- 179 (629)
T PRK11634 133 PGRLLDHLKR-GTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPE-------------------------------- 179 (629)
T ss_pred HHHHHHHHHc-CCcchhhceEEEeccHHHHhhcccHHHHHHHHHhCCC--------------------------------
Confidence 9999999987 5688999999999999999999998888888888766
Q ss_pred CCCCCCceeEEEEEEecCCCchhhhccccCCCeEEecCCccccCcccceeEEEeccCCCcHHHHHHHHHhcCCCeEEEEc
Q 017196 260 KDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFT 339 (375)
Q Consensus 260 ~~~~~~~~q~i~~SATl~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~k~lIF~ 339 (375)
..|+++||||+|..+..+...++.++..+.+..... ....+.+.+..+....|...|..++......++||||
T Consensus 180 ------~~q~llfSAT~p~~i~~i~~~~l~~~~~i~i~~~~~-~~~~i~q~~~~v~~~~k~~~L~~~L~~~~~~~~IVF~ 252 (629)
T PRK11634 180 ------GHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVT-TRPDISQSYWTVWGMRKNEALVRFLEAEDFDAAIIFV 252 (629)
T ss_pred ------CCeEEEEEccCChhHHHHHHHHcCCCeEEEccCccc-cCCceEEEEEEechhhHHHHHHHHHHhcCCCCEEEEe
Confidence 668999999999999999999998888877665442 2345667777777778889999999887778999999
Q ss_pred CChhhHHHHHHHHHHhcCCcceEEeccccccccccC
Q 017196 340 SSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRR 375 (375)
Q Consensus 340 ~s~~~a~~l~~~L~~~g~~~~~~~~lh~~~~~~~R~ 375 (375)
+|+.+|+.+++.|... ++.+..+||+|++.+|+
T Consensus 253 ~tk~~a~~l~~~L~~~---g~~~~~lhgd~~q~~R~ 285 (629)
T PRK11634 253 RTKNATLEVAEALERN---GYNSAALNGDMNQALRE 285 (629)
T ss_pred ccHHHHHHHHHHHHhC---CCCEEEeeCCCCHHHHH
Confidence 9999999999999954 49999999999998873
No 13
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=100.00 E-value=2.5e-41 Score=336.30 Aligned_cols=286 Identities=25% Similarity=0.413 Sum_probs=242.1
Q ss_pred CCCCccCccccCCCCCCCCCCHHHHHHHHhCCCCCccHhhHHHHHHhhCCCCCCCCEEEECCCCCchHHHhHHHHHHHhh
Q 017196 16 RSPVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLS 95 (375)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~l~~~i~~~l~~~g~~~~~~~Q~~~~~~~~~~~~~~~~~ii~a~TGsGKTl~~~l~il~~l~ 95 (375)
..|.+..+|++++ +++.+.++|.+.||..|+|+|.+||+.++ .|+|++++||||||||++|++|++..+.
T Consensus 115 ~~p~pi~~f~~~~------l~~~l~~~L~~~g~~~ptpiQ~~aip~il----~g~dviv~ApTGSGKTlayllPil~~l~ 184 (518)
T PLN00206 115 AVPPPILSFSSCG------LPPKLLLNLETAGYEFPTPIQMQAIPAAL----SGRSLLVSADTGSGKTASFLVPIISRCC 184 (518)
T ss_pred CCCchhcCHHhCC------CCHHHHHHHHHcCCCCCCHHHHHHHHHHh----cCCCEEEEecCCCCccHHHHHHHHHHHH
Confidence 3478899999999 99999999999999999999999999887 6899999999999999999999998875
Q ss_pred hc------ccCCceEEEEcccHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhh
Q 017196 96 NR------AVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQEL 169 (375)
Q Consensus 96 ~~------~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (375)
.. ...++++|||+||++||.|+++.++.+....++++..++||.....+.. .+
T Consensus 185 ~~~~~~~~~~~~~~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~~~~~gG~~~~~q~~---------------------~l 243 (518)
T PLN00206 185 TIRSGHPSEQRNPLAMVLTPTRELCVQVEDQAKVLGKGLPFKTALVVGGDAMPQQLY---------------------RI 243 (518)
T ss_pred hhccccccccCCceEEEEeCCHHHHHHHHHHHHHHhCCCCceEEEEECCcchHHHHH---------------------Hh
Confidence 31 1246789999999999999999999998888889988998877655432 45
Q ss_pred cCCCcEEEeCcHHHHHHHhhcCCCCCCCccEEEEecchhhhhHhHHhHHHHHHHhhhccccccccccccccccccccccc
Q 017196 170 QSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKT 249 (375)
Q Consensus 170 ~~~~~IiV~Tp~~l~~~l~~~~~~~~~~~~~vIiDE~h~l~~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 249 (375)
..+++|+|+||++|.+++.. ..+.++.+++||+||||+|++.+|...+..++..++
T Consensus 244 ~~~~~IiV~TPgrL~~~l~~-~~~~l~~v~~lViDEad~ml~~gf~~~i~~i~~~l~----------------------- 299 (518)
T PLN00206 244 QQGVELIVGTPGRLIDLLSK-HDIELDNVSVLVLDEVDCMLERGFRDQVMQIFQALS----------------------- 299 (518)
T ss_pred cCCCCEEEECHHHHHHHHHc-CCccchheeEEEeecHHHHhhcchHHHHHHHHHhCC-----------------------
Confidence 66789999999999999987 467899999999999999999999888877776552
Q ss_pred ccccccccCCCCCCCCceeEEEEEEecCCCchhhhccccCCCeEEecCCccccCcccceeEEEeccCCCcHHHHHHHHHh
Q 017196 250 IRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQS 329 (375)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~q~i~~SATl~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~ 329 (375)
+.|++++|||++..+..+...++.++..+...... .....+++....+....+...+.++++.
T Consensus 300 ----------------~~q~l~~SATl~~~v~~l~~~~~~~~~~i~~~~~~-~~~~~v~q~~~~~~~~~k~~~l~~~l~~ 362 (518)
T PLN00206 300 ----------------QPQVLLFSATVSPEVEKFASSLAKDIILISIGNPN-RPNKAVKQLAIWVETKQKKQKLFDILKS 362 (518)
T ss_pred ----------------CCcEEEEEeeCCHHHHHHHHHhCCCCEEEEeCCCC-CCCcceeEEEEeccchhHHHHHHHHHHh
Confidence 35799999999998888888888888887776543 2334567777777777788888888875
Q ss_pred cC--CCeEEEEcCChhhHHHHHHHHHHhcCCcceEEeccccccccccC
Q 017196 330 LG--EEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRR 375 (375)
Q Consensus 330 ~~--~~k~lIF~~s~~~a~~l~~~L~~~g~~~~~~~~lh~~~~~~~R~ 375 (375)
.. ..++||||+++..|+.+++.|.. ..++.+..+||+|++.+|+
T Consensus 363 ~~~~~~~~iVFv~s~~~a~~l~~~L~~--~~g~~~~~~Hg~~~~~eR~ 408 (518)
T PLN00206 363 KQHFKPPAVVFVSSRLGADLLANAITV--VTGLKALSIHGEKSMKERR 408 (518)
T ss_pred hcccCCCEEEEcCCchhHHHHHHHHhh--ccCcceEEeeCCCCHHHHH
Confidence 43 35899999999999999999974 2358899999999999884
No 14
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.3e-41 Score=313.61 Aligned_cols=287 Identities=31% Similarity=0.464 Sum_probs=251.1
Q ss_pred CccccCCCCCCCCCCHHHHHHHHhCCCCCccHhhHHHHHHhhCCCCCCCCEEEECCCCCchHHHhHHHHHHHhhhcccC-
Q 017196 22 SLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVR- 100 (375)
Q Consensus 22 ~~~~~~~~~~~~~l~~~i~~~l~~~g~~~~~~~Q~~~~~~~~~~~~~~~~~ii~a~TGsGKTl~~~l~il~~l~~~~~~- 100 (375)
..|++++.. |.+++.+++..+||...||+|..++|.++ +++|+++.|+||||||+||++|+++.+.++..+
T Consensus 4 ~~~~~l~~~----L~~~l~~~l~~~GF~~mTpVQa~tIPlll----~~KDVvveavTGSGKTlAFllP~le~i~rr~~~~ 75 (567)
T KOG0345|consen 4 KSFSSLAPP----LSPWLLEALDESGFEKMTPVQAATIPLLL----KNKDVVVEAVTGSGKTLAFLLPMLEIIYRREAKT 75 (567)
T ss_pred cchhhcCCC----ccHHHHHHHHhcCCcccCHHHHhhhHHHh----cCCceEEEcCCCCCchhhHHHHHHHHHHhhccCC
Confidence 457777733 88999999999999999999999977766 799999999999999999999999999554322
Q ss_pred -C--ceEEEEcccHHHHHHHHHHHHHhccc-cCceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcCCCcEE
Q 017196 101 -C--LRALVVLPTRDLALQVKDVFAAIAPA-VGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDIL 176 (375)
Q Consensus 101 -~--~~~lil~Pt~~L~~Q~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ii 176 (375)
. .-++||+||||||.|+...+..|... ..+++.++.||.+..++.+.+. ..+++|+
T Consensus 76 ~~~~vgalIIsPTRELa~QI~~V~~~F~~~l~~l~~~l~vGG~~v~~Di~~fk--------------------ee~~nIl 135 (567)
T KOG0345|consen 76 PPGQVGALIISPTRELARQIREVAQPFLEHLPNLNCELLVGGRSVEEDIKTFK--------------------EEGPNIL 135 (567)
T ss_pred CccceeEEEecCcHHHHHHHHHHHHHHHHhhhccceEEEecCccHHHHHHHHH--------------------HhCCcEE
Confidence 1 35999999999999999999988876 5789999999988877765432 4578999
Q ss_pred EeCcHHHHHHHhh-cCCCCCCCccEEEEecchhhhhHhHHhHHHHHHHhhhccccccccccccccccccccccccccccc
Q 017196 177 VATPGRLMDHINA-TRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGV 255 (375)
Q Consensus 177 V~Tp~~l~~~l~~-~~~~~~~~~~~vIiDE~h~l~~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (375)
||||++|.+++.+ ...++++.+.++|+||||.+++-+|...++.|+..+|.
T Consensus 136 VgTPGRL~di~~~~~~~l~~rsLe~LVLDEADrLldmgFe~~~n~ILs~LPK---------------------------- 187 (567)
T KOG0345|consen 136 VGTPGRLLDILQREAEKLSFRSLEILVLDEADRLLDMGFEASVNTILSFLPK---------------------------- 187 (567)
T ss_pred EeCchhHHHHHhchhhhccccccceEEecchHhHhcccHHHHHHHHHHhccc----------------------------
Confidence 9999999999988 33467889999999999999999999999999999998
Q ss_pred ccCCCCCCCCceeEEEEEEecCCCchhhhccccCCCeEEecCCccc-cCcccceeEEEeccCCCcHHHHHHHHHhcCCCe
Q 017196 256 ERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRY-KLPERLESYKLICESKLKPLYLVALLQSLGEEK 334 (375)
Q Consensus 256 ~~~~~~~~~~~~q~i~~SATl~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~k 334 (375)
....-+||||....+..+.+.++++|+.+.+..... ..|..+..+|..|+...|...+.+++.....++
T Consensus 188 ----------QRRTGLFSATq~~~v~dL~raGLRNpv~V~V~~k~~~~tPS~L~~~Y~v~~a~eK~~~lv~~L~~~~~kK 257 (567)
T KOG0345|consen 188 ----------QRRTGLFSATQTQEVEDLARAGLRNPVRVSVKEKSKSATPSSLALEYLVCEADEKLSQLVHLLNNNKDKK 257 (567)
T ss_pred ----------ccccccccchhhHHHHHHHHhhccCceeeeecccccccCchhhcceeeEecHHHHHHHHHHHHhcccccc
Confidence 334689999999999999999999999999877653 367789999999999999999999999998999
Q ss_pred EEEEcCChhhHHHHHHHHHHhcCCcceEEeccccccccccC
Q 017196 335 CIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRR 375 (375)
Q Consensus 335 ~lIF~~s~~~a~~l~~~L~~~g~~~~~~~~lh~~~~~~~R~ 375 (375)
+|||..|=..++..+..|... ....++..+||.|++.+|.
T Consensus 258 ~iVFF~TCasVeYf~~~~~~~-l~~~~i~~iHGK~~q~~R~ 297 (567)
T KOG0345|consen 258 CIVFFPTCASVEYFGKLFSRL-LKKREIFSIHGKMSQKARA 297 (567)
T ss_pred EEEEecCcchHHHHHHHHHHH-hCCCcEEEecchhcchhHH
Confidence 999999999999999999876 3467899999999999874
No 15
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=100.00 E-value=8.6e-41 Score=327.27 Aligned_cols=279 Identities=28% Similarity=0.379 Sum_probs=236.0
Q ss_pred ccccCCCCCCCCCCHHHHHHHHhCCCCCccHhhHHHHHHhhCCCCCCCCEEEECCCCCchHHHhHHHHHHHhhhcc---c
Q 017196 23 LFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRA---V 99 (375)
Q Consensus 23 ~~~~~~~~~~~~l~~~i~~~l~~~g~~~~~~~Q~~~~~~~~~~~~~~~~~ii~a~TGsGKTl~~~l~il~~l~~~~---~ 99 (375)
+|++++ +++.+.+.+.+.||..|+++|.++++.++ .|+|++++||||+|||++|++|+++.+.... .
T Consensus 2 ~f~~l~------l~~~l~~~l~~~g~~~p~~iQ~~ai~~~~----~g~d~l~~apTGsGKT~~~~lp~l~~l~~~~~~~~ 71 (434)
T PRK11192 2 TFSELE------LDESLLEALQDKGYTRPTAIQAEAIPPAL----DGRDVLGSAPTGTGKTAAFLLPALQHLLDFPRRKS 71 (434)
T ss_pred CHhhcC------CCHHHHHHHHHCCCCCCCHHHHHHHHHHh----CCCCEEEECCCCChHHHHHHHHHHHHHhhccccCC
Confidence 578888 99999999999999999999999998887 6899999999999999999999999886532 2
Q ss_pred CCceEEEEcccHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcCCCcEEEeC
Q 017196 100 RCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVAT 179 (375)
Q Consensus 100 ~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiV~T 179 (375)
..+++||++||++|+.|+++.+..++...++++..++|+.....+.. .+.++++|+|+|
T Consensus 72 ~~~~~lil~Pt~eLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~---------------------~l~~~~~IlV~T 130 (434)
T PRK11192 72 GPPRILILTPTRELAMQVADQARELAKHTHLDIATITGGVAYMNHAE---------------------VFSENQDIVVAT 130 (434)
T ss_pred CCceEEEECCcHHHHHHHHHHHHHHHccCCcEEEEEECCCCHHHHHH---------------------HhcCCCCEEEEC
Confidence 34689999999999999999999999988999999999987655532 455678999999
Q ss_pred cHHHHHHHhhcCCCCCCCccEEEEecchhhhhHhHHhHHHHHHHhhhcccccccccccccccccccccccccccccccCC
Q 017196 180 PGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGF 259 (375)
Q Consensus 180 p~~l~~~l~~~~~~~~~~~~~vIiDE~h~l~~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (375)
|++|.+++.+ ..+.++.+++||+||||++++.+|...+..+...++.
T Consensus 131 p~rl~~~~~~-~~~~~~~v~~lViDEah~~l~~~~~~~~~~i~~~~~~-------------------------------- 177 (434)
T PRK11192 131 PGRLLQYIKE-ENFDCRAVETLILDEADRMLDMGFAQDIETIAAETRW-------------------------------- 177 (434)
T ss_pred hHHHHHHHHc-CCcCcccCCEEEEECHHHHhCCCcHHHHHHHHHhCcc--------------------------------
Confidence 9999999987 5688899999999999999998988888888766554
Q ss_pred CCCCCCceeEEEEEEecCC-CchhhhccccCCCeEEecCCccccCcccceeEEEecc-CCCcHHHHHHHHHhcCCCeEEE
Q 017196 260 KDKPYPRLVKMVLSATLTQ-DPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICE-SKLKPLYLVALLQSLGEEKCIV 337 (375)
Q Consensus 260 ~~~~~~~~q~i~~SATl~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~~~~~~-~~~k~~~l~~ll~~~~~~k~lI 337 (375)
..|+++||||++. .+..+...++.++..+...... .....+.+++..+. ...+...+..+++.....++||
T Consensus 178 ------~~q~~~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~i~~~~~~~~~~~~k~~~l~~l~~~~~~~~~lV 250 (434)
T PRK11192 178 ------RKQTLLFSATLEGDAVQDFAERLLNDPVEVEAEPSR-RERKKIHQWYYRADDLEHKTALLCHLLKQPEVTRSIV 250 (434)
T ss_pred ------ccEEEEEEeecCHHHHHHHHHHHccCCEEEEecCCc-ccccCceEEEEEeCCHHHHHHHHHHHHhcCCCCeEEE
Confidence 5689999999975 4667777777888877765543 23345667666665 3678888888888767789999
Q ss_pred EcCChhhHHHHHHHHHHhcCCcceEEeccccccccccC
Q 017196 338 FTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRR 375 (375)
Q Consensus 338 F~~s~~~a~~l~~~L~~~g~~~~~~~~lh~~~~~~~R~ 375 (375)
||+++++|+.++..|+. .++.+..+||+|++.+|.
T Consensus 251 F~~s~~~~~~l~~~L~~---~~~~~~~l~g~~~~~~R~ 285 (434)
T PRK11192 251 FVRTRERVHELAGWLRK---AGINCCYLEGEMVQAKRN 285 (434)
T ss_pred EeCChHHHHHHHHHHHh---CCCCEEEecCCCCHHHHH
Confidence 99999999999999995 458999999999999883
No 16
>KOG0343 consensus RNA Helicase [RNA processing and modification]
Probab=100.00 E-value=1.4e-41 Score=318.37 Aligned_cols=283 Identities=28% Similarity=0.419 Sum_probs=258.9
Q ss_pred cCccccCCCCCCCCCCHHHHHHHHhCCCCCccHhhHHHHHHhhCCCCCCCCEEEECCCCCchHHHhHHHHHHHhhhc---
Q 017196 21 VSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNR--- 97 (375)
Q Consensus 21 ~~~~~~~~~~~~~~l~~~i~~~l~~~g~~~~~~~Q~~~~~~~~~~~~~~~~~ii~a~TGsGKTl~~~l~il~~l~~~--- 97 (375)
...|+++| ++.....+|++.+|..++.+|+.+++..+ .|+|++-.|-||||||+||++|+++.+.+.
T Consensus 68 ~~kF~dlp------ls~~t~kgLke~~fv~~teiQ~~~Ip~aL----~G~DvlGAAkTGSGKTLAFlvPvlE~L~r~kWs 137 (758)
T KOG0343|consen 68 IKKFADLP------LSQKTLKGLKEAKFVKMTEIQRDTIPMAL----QGHDVLGAAKTGSGKTLAFLVPVLEALYRLKWS 137 (758)
T ss_pred hhhHHhCC------CchHHHHhHhhcCCccHHHHHHhhcchhc----cCcccccccccCCCceeeehHHHHHHHHHcCCC
Confidence 45788999 99999999999999999999999865554 799999999999999999999999999763
Q ss_pred ccCCceEEEEcccHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcCCCcEEE
Q 017196 98 AVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILV 177 (375)
Q Consensus 98 ~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiV 177 (375)
+..+.-+|||.||||||.|++..+.+++...+++.+++.||.....+..+ -++++|+|
T Consensus 138 ~~DGlGalIISPTRELA~QtFevL~kvgk~h~fSaGLiiGG~~~k~E~eR----------------------i~~mNILV 195 (758)
T KOG0343|consen 138 PTDGLGALIISPTRELALQTFEVLNKVGKHHDFSAGLIIGGKDVKFELER----------------------ISQMNILV 195 (758)
T ss_pred CCCCceeEEecchHHHHHHHHHHHHHHhhccccccceeecCchhHHHHHh----------------------hhcCCeEE
Confidence 34566799999999999999999999999999999999999987776543 24679999
Q ss_pred eCcHHHHHHHhhcCCCCCCCccEEEEecchhhhhHhHHhHHHHHHHhhhccccccccccccccccccccccccccccccc
Q 017196 178 ATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVER 257 (375)
Q Consensus 178 ~Tp~~l~~~l~~~~~~~~~~~~~vIiDE~h~l~~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (375)
|||++|++++.....+.-..+.++|+||||++++.+|...+..|++.+|.
T Consensus 196 CTPGRLLQHmde~~~f~t~~lQmLvLDEADR~LDMGFk~tL~~Ii~~lP~------------------------------ 245 (758)
T KOG0343|consen 196 CTPGRLLQHMDENPNFSTSNLQMLVLDEADRMLDMGFKKTLNAIIENLPK------------------------------ 245 (758)
T ss_pred echHHHHHHhhhcCCCCCCcceEEEeccHHHHHHHhHHHHHHHHHHhCCh------------------------------
Confidence 99999999999988899999999999999999999999999999999998
Q ss_pred CCCCCCCCceeEEEEEEecCCCchhhhccccCCCeEEecCCcc-ccCcccceeEEEeccCCCcHHHHHHHHHhcCCCeEE
Q 017196 258 GFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETR-YKLPERLESYKLICESKLKPLYLVALLQSLGEEKCI 336 (375)
Q Consensus 258 ~~~~~~~~~~q~i~~SATl~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~k~l 336 (375)
..|.++||||.+.++..+++.-+.+|.++.++... ...|.++.++|+.++..+|++.|..+|+.+...+.|
T Consensus 246 --------~RQTLLFSATqt~svkdLaRLsL~dP~~vsvhe~a~~atP~~L~Q~y~~v~l~~Ki~~L~sFI~shlk~K~i 317 (758)
T KOG0343|consen 246 --------KRQTLLFSATQTKSVKDLARLSLKDPVYVSVHENAVAATPSNLQQSYVIVPLEDKIDMLWSFIKSHLKKKSI 317 (758)
T ss_pred --------hheeeeeecccchhHHHHHHhhcCCCcEEEEeccccccChhhhhheEEEEehhhHHHHHHHHHHhccccceE
Confidence 66889999999999999999999999999988443 678899999999999999999999999999888999
Q ss_pred EEcCChhhHHHHHHHHHHhcCCcceEEecccccccccc
Q 017196 337 VFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVR 374 (375)
Q Consensus 337 IF~~s~~~a~~l~~~L~~~g~~~~~~~~lh~~~~~~~R 374 (375)
||+.|-++++.+++.+...- .|+.+..+||+|++..|
T Consensus 318 VF~SscKqvkf~~e~F~rlr-pg~~l~~L~G~~~Q~~R 354 (758)
T KOG0343|consen 318 VFLSSCKQVKFLYEAFCRLR-PGIPLLALHGTMSQKKR 354 (758)
T ss_pred EEEehhhHHHHHHHHHHhcC-CCCceeeeccchhHHHH
Confidence 99999999999999998763 77999999999999877
No 17
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=6.6e-40 Score=324.06 Aligned_cols=285 Identities=26% Similarity=0.335 Sum_probs=237.5
Q ss_pred ccCccccCCCCCCCCCCHHHHHHHHhCCCCCccHhhHHHHHHhhCCCCCCCCEEEECCCCCchHHHhHHHHHHHhhhccc
Q 017196 20 DVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAV 99 (375)
Q Consensus 20 ~~~~~~~~~~~~~~~l~~~i~~~l~~~g~~~~~~~Q~~~~~~~~~~~~~~~~~ii~a~TGsGKTl~~~l~il~~l~~~~~ 99 (375)
....|.+++ |++.+.++|.+.||..|+++|.++|+.++ .|+|+++.+|||||||++|++|+++.+.....
T Consensus 85 ~~~~f~~~~------l~~~l~~~l~~~g~~~~~~iQ~~ai~~~~----~G~dvi~~apTGSGKTlay~lpil~~l~~~~~ 154 (475)
T PRK01297 85 GKTRFHDFN------LAPELMHAIHDLGFPYCTPIQAQVLGYTL----AGHDAIGRAQTGTGKTAAFLISIINQLLQTPP 154 (475)
T ss_pred CCCCHhHCC------CCHHHHHHHHHCCCCCCCHHHHHHHHHHh----CCCCEEEECCCCChHHHHHHHHHHHHHHhcCc
Confidence 344666666 99999999999999999999999998877 69999999999999999999999999876531
Q ss_pred ------CCceEEEEcccHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcCCC
Q 017196 100 ------RCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAV 173 (375)
Q Consensus 100 ------~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (375)
..+++|||+||++|+.|+++.++.+....++++..++|+.....+... .....+
T Consensus 155 ~~~~~~~~~~aLil~PtreLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~--------------------~~~~~~ 214 (475)
T PRK01297 155 PKERYMGEPRALIIAPTRELVVQIAKDAAALTKYTGLNVMTFVGGMDFDKQLKQ--------------------LEARFC 214 (475)
T ss_pred ccccccCCceEEEEeCcHHHHHHHHHHHHHhhccCCCEEEEEEccCChHHHHHH--------------------HhCCCC
Confidence 146899999999999999999999998889999999998776555331 123468
Q ss_pred cEEEeCcHHHHHHHhhcCCCCCCCccEEEEecchhhhhHhHHhHHHHHHHhhhccccccccccccccccccccccccccc
Q 017196 174 DILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRC 253 (375)
Q Consensus 174 ~IiV~Tp~~l~~~l~~~~~~~~~~~~~vIiDE~h~l~~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (375)
+|+|+||++|.+++.+ ....++.+++|||||+|.+.+.+|...+..++..++...
T Consensus 215 ~Iiv~TP~~Ll~~~~~-~~~~l~~l~~lViDEah~l~~~~~~~~l~~i~~~~~~~~------------------------ 269 (475)
T PRK01297 215 DILVATPGRLLDFNQR-GEVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPRKE------------------------ 269 (475)
T ss_pred CEEEECHHHHHHHHHc-CCcccccCceEEechHHHHHhcccHHHHHHHHHhCCCCC------------------------
Confidence 9999999999988876 457789999999999999998888777777777654321
Q ss_pred ccccCCCCCCCCceeEEEEEEecCCCchhhhccccCCCeEEecCCccccCcccceeEEEeccCCCcHHHHHHHHHhcCCC
Q 017196 254 GVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEE 333 (375)
Q Consensus 254 ~~~~~~~~~~~~~~q~i~~SATl~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~ 333 (375)
+.|++++|||++.+...+...++.++..+.+..... ....+.+.+..+...++...+..++......
T Consensus 270 ------------~~q~i~~SAT~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~~~~k~~~l~~ll~~~~~~ 336 (475)
T PRK01297 270 ------------ERQTLLFSATFTDDVMNLAKQWTTDPAIVEIEPENV-ASDTVEQHVYAVAGSDKYKLLYNLVTQNPWE 336 (475)
T ss_pred ------------CceEEEEEeecCHHHHHHHHHhccCCEEEEeccCcC-CCCcccEEEEEecchhHHHHHHHHHHhcCCC
Confidence 458999999999988888888888888776655442 2334556666667778888999999887778
Q ss_pred eEEEEcCChhhHHHHHHHHHHhcCCcceEEeccccccccccC
Q 017196 334 KCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRR 375 (375)
Q Consensus 334 k~lIF~~s~~~a~~l~~~L~~~g~~~~~~~~lh~~~~~~~R~ 375 (375)
++||||+++++|+.+++.|... ++.+..+||+|++++|+
T Consensus 337 ~~IVF~~s~~~~~~l~~~L~~~---~~~~~~~~g~~~~~~R~ 375 (475)
T PRK01297 337 RVMVFANRKDEVRRIEERLVKD---GINAAQLSGDVPQHKRI 375 (475)
T ss_pred eEEEEeCCHHHHHHHHHHHHHc---CCCEEEEECCCCHHHHH
Confidence 9999999999999999999854 48899999999998883
No 18
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=100.00 E-value=1.9e-40 Score=309.23 Aligned_cols=311 Identities=23% Similarity=0.345 Sum_probs=262.3
Q ss_pred CCCCccCccccCCCCCCCCCCHHHHHHHHhCCCCCccHhhHHHHHHhhCCCCCCCCEEEECCCCCchHHHhHHHHHHHhh
Q 017196 16 RSPVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLS 95 (375)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~l~~~i~~~l~~~g~~~~~~~Q~~~~~~~~~~~~~~~~~ii~a~TGsGKTl~~~l~il~~l~ 95 (375)
..|.|+++|++.+ ++.++++.+.+.||..|+|+|+.|++ .....+|+|..|.||||||++|++|++.++.
T Consensus 239 ~lpnplrnwEE~~------~P~e~l~~I~~~~y~eptpIqR~aip----l~lQ~rD~igvaETgsGktaaf~ipLl~~Is 308 (673)
T KOG0333|consen 239 RLPNPLRNWEESG------FPLELLSVIKKPGYKEPTPIQRQAIP----LGLQNRDPIGVAETGSGKTAAFLIPLLIWIS 308 (673)
T ss_pred CCCccccChhhcC------CCHHHHHHHHhcCCCCCchHHHhhcc----chhccCCeeeEEeccCCccccchhhHHHHHH
Confidence 3599999999999 99999999999999999999999855 4457899999999999999999999999886
Q ss_pred hcc--------cCCceEEEEcccHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHH
Q 017196 96 NRA--------VRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQ 167 (375)
Q Consensus 96 ~~~--------~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (375)
.-+ ..+|+++|++|||+|++|+...-.+++...++++..+.||.+..++ .-
T Consensus 309 slP~~~~~en~~~gpyaiilaptReLaqqIeeEt~kf~~~lg~r~vsvigg~s~EEq---------------------~f 367 (673)
T KOG0333|consen 309 SLPPMARLENNIEGPYAIILAPTRELAQQIEEETNKFGKPLGIRTVSVIGGLSFEEQ---------------------GF 367 (673)
T ss_pred cCCCcchhhhcccCceeeeechHHHHHHHHHHHHHHhcccccceEEEEecccchhhh---------------------hh
Confidence 643 3578999999999999999999999999999999999999987655 23
Q ss_pred hhcCCCcEEEeCcHHHHHHHhhcCCCCCCCccEEEEecchhhhhHhHHhHHHHHHHhhhccccccccccccccccccccc
Q 017196 168 ELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSL 247 (375)
Q Consensus 168 ~~~~~~~IiV~Tp~~l~~~l~~~~~~~~~~~~~vIiDE~h~l~~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~ 247 (375)
.+..+|+|+|+||++|.+.+.+ ..+-++++.+||+||||.|++.+|.+.+..++..+|...............+.+..
T Consensus 368 qls~gceiviatPgrLid~Len-r~lvl~qctyvvldeadrmiDmgfE~dv~~iL~~mPssn~k~~tde~~~~~~~~~~- 445 (673)
T KOG0333|consen 368 QLSMGCEIVIATPGRLIDSLEN-RYLVLNQCTYVVLDEADRMIDMGFEPDVQKILEQMPSSNAKPDTDEKEGEERVRKN- 445 (673)
T ss_pred hhhccceeeecCchHHHHHHHH-HHHHhccCceEeccchhhhhcccccHHHHHHHHhCCccccCCCccchhhHHHHHhh-
Confidence 5678999999999999999998 66889999999999999999999999999999999875432111111111100000
Q ss_pred ccccccccccCCCCCCCCceeEEEEEEecCCCchhhhccccCCCeEEecCCccccCcccceeEEEeccCCCcHHHHHHHH
Q 017196 248 KTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALL 327 (375)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll 327 (375)
+.. +-.-.|.+.||||+|+.+..+++.++.+|+.+.++.... ....+++.++.++.+.|...|.+++
T Consensus 446 -----------~~~-~k~yrqT~mftatm~p~verlar~ylr~pv~vtig~~gk-~~~rveQ~v~m~~ed~k~kkL~eil 512 (673)
T KOG0333|consen 446 -----------FSS-SKKYRQTVMFTATMPPAVERLARSYLRRPVVVTIGSAGK-PTPRVEQKVEMVSEDEKRKKLIEIL 512 (673)
T ss_pred -----------ccc-ccceeEEEEEecCCChHHHHHHHHHhhCCeEEEeccCCC-CccchheEEEEecchHHHHHHHHHH
Confidence 000 001268999999999999999999999999999887653 3456788888888899999999999
Q ss_pred HhcCCCeEEEEcCChhhHHHHHHHHHHhcCCcceEEeccccccccccC
Q 017196 328 QSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRR 375 (375)
Q Consensus 328 ~~~~~~k~lIF~~s~~~a~~l~~~L~~~g~~~~~~~~lh~~~~~~~R~ 375 (375)
......++|||+|+++.|+.+|+.|.+. |++|..|||+-++.||.
T Consensus 513 ~~~~~ppiIIFvN~kk~~d~lAk~LeK~---g~~~~tlHg~k~qeQRe 557 (673)
T KOG0333|consen 513 ESNFDPPIIIFVNTKKGADALAKILEKA---GYKVTTLHGGKSQEQRE 557 (673)
T ss_pred HhCCCCCEEEEEechhhHHHHHHHHhhc---cceEEEeeCCccHHHHH
Confidence 9987779999999999999999999954 49999999999999983
No 19
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]
Probab=100.00 E-value=3.2e-40 Score=306.18 Aligned_cols=282 Identities=30% Similarity=0.451 Sum_probs=248.2
Q ss_pred CccccCCCCCCCCCCHHHHHHHHhCCCCCccHhhHHHHHHhhCCCCCCCCEEEECCCCCchHHHhHHHHHHHhhhcc---
Q 017196 22 SLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRA--- 98 (375)
Q Consensus 22 ~~~~~~~~~~~~~l~~~i~~~l~~~g~~~~~~~Q~~~~~~~~~~~~~~~~~ii~a~TGsGKTl~~~l~il~~l~~~~--- 98 (375)
..|+..+ |++....++..+||.+.+++|+.+ ++.+..|+|+++.|-||||||+||++|+++.+.+.+
T Consensus 82 ~~f~~~~------LS~~t~kAi~~~GF~~MT~VQ~~t----i~pll~gkDvl~~AKTGtGKTlAFLiPaie~l~k~~~~~ 151 (543)
T KOG0342|consen 82 FRFEEGS------LSPLTLKAIKEMGFETMTPVQQKT----IPPLLEGKDVLAAAKTGTGKTLAFLLPAIELLRKLKFKP 151 (543)
T ss_pred hHhhccc------cCHHHHHHHHhcCccchhHHHHhh----cCccCCCccceeeeccCCCceeeehhHHHHHHHhcccCC
Confidence 3455555 999999999999999999999997 555568999999999999999999999999997753
Q ss_pred cCCceEEEEcccHHHHHHHHHHHHHhcccc-CceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcCCCcEEE
Q 017196 99 VRCLRALVVLPTRDLALQVKDVFAAIAPAV-GLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILV 177 (375)
Q Consensus 99 ~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiV 177 (375)
..+..++||+|||+||.|++.+++++.... ++.+..+.||.....+.. ++..+++|+|
T Consensus 152 r~~~~vlIi~PTRELA~Q~~~eak~Ll~~h~~~~v~~viGG~~~~~e~~---------------------kl~k~~nili 210 (543)
T KOG0342|consen 152 RNGTGVLIICPTRELAMQIFAEAKELLKYHESITVGIVIGGNNFSVEAD---------------------KLVKGCNILI 210 (543)
T ss_pred CCCeeEEEecccHHHHHHHHHHHHHHHhhCCCcceEEEeCCccchHHHH---------------------HhhccccEEE
Confidence 344569999999999999999999999887 899999999998877654 4556899999
Q ss_pred eCcHHHHHHHhhcCCCCCCCccEEEEecchhhhhHhHHhHHHHHHHhhhccccccccccccccccccccccccccccccc
Q 017196 178 ATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVER 257 (375)
Q Consensus 178 ~Tp~~l~~~l~~~~~~~~~~~~~vIiDE~h~l~~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (375)
+||++|.+++.+...+.++.++++|+||||++++.+|...+..|+..++.
T Consensus 211 ATPGRLlDHlqNt~~f~~r~~k~lvlDEADrlLd~GF~~di~~Ii~~lpk------------------------------ 260 (543)
T KOG0342|consen 211 ATPGRLLDHLQNTSGFLFRNLKCLVLDEADRLLDIGFEEDVEQIIKILPK------------------------------ 260 (543)
T ss_pred eCCchHHhHhhcCCcchhhccceeEeecchhhhhcccHHHHHHHHHhccc------------------------------
Confidence 99999999999988899999999999999999999999999999999986
Q ss_pred CCCCCCCCceeEEEEEEecCCCchhhhccccC-CCeEEecCCccc-cCcccceeEEEeccCCCcHHHHHHHHHhcCC-Ce
Q 017196 258 GFKDKPYPRLVKMVLSATLTQDPNKLAQLDLH-HPLFLTTGETRY-KLPERLESYKLICESKLKPLYLVALLQSLGE-EK 334 (375)
Q Consensus 258 ~~~~~~~~~~q~i~~SATl~~~~~~~~~~~~~-~~~~i~~~~~~~-~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~-~k 334 (375)
..|..+||||.+..++.+++..+. +++++....... .....+.+.|+.++...+...+..++++... .+
T Consensus 261 --------~rqt~LFSAT~~~kV~~l~~~~L~~d~~~v~~~d~~~~~The~l~Qgyvv~~~~~~f~ll~~~LKk~~~~~K 332 (543)
T KOG0342|consen 261 --------QRQTLLFSATQPSKVKDLARGALKRDPVFVNVDDGGERETHERLEQGYVVAPSDSRFSLLYTFLKKNIKRYK 332 (543)
T ss_pred --------cceeeEeeCCCcHHHHHHHHHhhcCCceEeecCCCCCcchhhcccceEEeccccchHHHHHHHHHHhcCCce
Confidence 668899999999999999887775 688888765442 3456788888889888888999999998865 89
Q ss_pred EEEEcCChhhHHHHHHHHHHhcCCcceEEeccccccccccC
Q 017196 335 CIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRR 375 (375)
Q Consensus 335 ~lIF~~s~~~a~~l~~~L~~~g~~~~~~~~lh~~~~~~~R~ 375 (375)
+||||.|-..+..+++.|+ ..+++|..+||+.++..|.
T Consensus 333 iiVF~sT~~~vk~~~~lL~---~~dlpv~eiHgk~~Q~kRT 370 (543)
T KOG0342|consen 333 IIVFFSTCMSVKFHAELLN---YIDLPVLEIHGKQKQNKRT 370 (543)
T ss_pred EEEEechhhHHHHHHHHHh---hcCCchhhhhcCCcccccc
Confidence 9999999999999999999 4559999999999999884
No 20
>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1e-41 Score=300.47 Aligned_cols=284 Identities=23% Similarity=0.375 Sum_probs=252.0
Q ss_pred ccCccccCCCCCCCCCCHHHHHHHHhCCCCCccHhhHHHHHHhhCCCCCCCCEEEECCCCCchHHHhHHHHHHHhhhccc
Q 017196 20 DVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAV 99 (375)
Q Consensus 20 ~~~~~~~~~~~~~~~l~~~i~~~l~~~g~~~~~~~Q~~~~~~~~~~~~~~~~~ii~a~TGsGKTl~~~l~il~~l~~~~~ 99 (375)
+++.-+...++++- |..+++-.+-+.||..|+|+|.++++..+ .|+|++..|..|+|||.||++|+++.+....
T Consensus 78 DVt~TkG~efEd~~-Lkr~LLmgIfe~G~ekPSPiQeesIPiaL----tGrdiLaRaKNGTGKT~a~~IP~Lekid~~~- 151 (459)
T KOG0326|consen 78 DVTATKGNEFEDYC-LKRELLMGIFEKGFEKPSPIQEESIPIAL----TGRDILARAKNGTGKTAAYCIPVLEKIDPKK- 151 (459)
T ss_pred ccccccCccHHHhh-hhHHHHHHHHHhccCCCCCccccccceee----cchhhhhhccCCCCCccceechhhhhcCccc-
Confidence 44433333344432 89999999999999999999999865554 8999999999999999999999999998764
Q ss_pred CCceEEEEcccHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcCCCcEEEeC
Q 017196 100 RCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVAT 179 (375)
Q Consensus 100 ~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiV~T 179 (375)
..-+++|++||||||.|+.+.++++++..++.+...+||++..++.- .+....+++|||
T Consensus 152 ~~IQ~~ilVPtrelALQtSqvc~~lskh~~i~vmvttGGT~lrDDI~---------------------Rl~~~VH~~vgT 210 (459)
T KOG0326|consen 152 NVIQAIILVPTRELALQTSQVCKELSKHLGIKVMVTTGGTSLRDDIM---------------------RLNQTVHLVVGT 210 (459)
T ss_pred cceeEEEEeecchhhHHHHHHHHHHhcccCeEEEEecCCccccccee---------------------eecCceEEEEcC
Confidence 45689999999999999999999999999999999999998766643 456678999999
Q ss_pred cHHHHHHHhhcCCCCCCCccEEEEecchhhhhHhHHhHHHHHHHhhhcccccccccccccccccccccccccccccccCC
Q 017196 180 PGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGF 259 (375)
Q Consensus 180 p~~l~~~l~~~~~~~~~~~~~vIiDE~h~l~~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (375)
|+++++++.. +--+++++.++|+||||.+++..|+..++.++.++|.
T Consensus 211 PGRIlDL~~K-gVa~ls~c~~lV~DEADKlLs~~F~~~~e~li~~lP~-------------------------------- 257 (459)
T KOG0326|consen 211 PGRILDLAKK-GVADLSDCVILVMDEADKLLSVDFQPIVEKLISFLPK-------------------------------- 257 (459)
T ss_pred ChhHHHHHhc-ccccchhceEEEechhhhhhchhhhhHHHHHHHhCCc--------------------------------
Confidence 9999999988 5567999999999999999999999999999999998
Q ss_pred CCCCCCceeEEEEEEecCCCchhhhccccCCCeEEecCCccccCcccceeEEEeccCCCcHHHHHHHHHhcCCCeEEEEc
Q 017196 260 KDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFT 339 (375)
Q Consensus 260 ~~~~~~~~q~i~~SATl~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~k~lIF~ 339 (375)
..|++++|||+|-.+..++.+++.+|..++.-.+- ....+.++|..+.+..|.-.|..++.+.+-.+.||||
T Consensus 258 ------~rQillySATFP~tVk~Fm~~~l~kPy~INLM~eL--tl~GvtQyYafV~e~qKvhCLntLfskLqINQsIIFC 329 (459)
T KOG0326|consen 258 ------ERQILLYSATFPLTVKGFMDRHLKKPYEINLMEEL--TLKGVTQYYAFVEERQKVHCLNTLFSKLQINQSIIFC 329 (459)
T ss_pred ------cceeeEEecccchhHHHHHHHhccCcceeehhhhh--hhcchhhheeeechhhhhhhHHHHHHHhcccceEEEe
Confidence 77899999999999999999999999999876553 3567899999999999999999999999988999999
Q ss_pred CChhhHHHHHHHHHHhcCCcceEEecccccccccc
Q 017196 340 SSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVR 374 (375)
Q Consensus 340 ~s~~~a~~l~~~L~~~g~~~~~~~~lh~~~~~~~R 374 (375)
||...++-+|....+.| +.|.++|+.|.+++|
T Consensus 330 NS~~rVELLAkKITelG---yscyyiHakM~Q~hR 361 (459)
T KOG0326|consen 330 NSTNRVELLAKKITELG---YSCYYIHAKMAQEHR 361 (459)
T ss_pred ccchHhHHHHHHHHhcc---chhhHHHHHHHHhhh
Confidence 99999999999999555 999999999999987
No 21
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=4.1e-40 Score=294.20 Aligned_cols=281 Identities=28% Similarity=0.410 Sum_probs=242.9
Q ss_pred cCccccCCCCCCCCCCHHHHHHHHhCCCCCccHhhHHHHHHhhCCCCCCCCEEEECCCCCchHHHhHHHHHHHhhhcccC
Q 017196 21 VSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVR 100 (375)
Q Consensus 21 ~~~~~~~~~~~~~~l~~~i~~~l~~~g~~~~~~~Q~~~~~~~~~~~~~~~~~ii~a~TGsGKTl~~~l~il~~l~~~~~~ 100 (375)
-.+|+.++ |.+|+.+.++++|+.+|+|+|..|++.++ .|+|++-+|.||||||.+|++|+++++.+++ .
T Consensus 6 ~~~F~~LG------l~~Wlve~l~~l~i~~pTpiQ~~cIpkIL----eGrdcig~AkTGsGKT~AFaLPil~rLsedP-~ 74 (442)
T KOG0340|consen 6 AKPFSILG------LSPWLVEQLKALGIKKPTPIQQACIPKIL----EGRDCIGCAKTGSGKTAAFALPILNRLSEDP-Y 74 (442)
T ss_pred cCchhhcC------ccHHHHHHHHHhcCCCCCchHhhhhHHHh----cccccccccccCCCcchhhhHHHHHhhccCC-C
Confidence 35788888 99999999999999999999999988877 7999999999999999999999999999985 4
Q ss_pred CceEEEEcccHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcCCCcEEEeCc
Q 017196 101 CLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATP 180 (375)
Q Consensus 101 ~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiV~Tp 180 (375)
+-.++|++||+||+-|+...+..++...++++..++||.+.-.+.. .+.+++||+|+||
T Consensus 75 giFalvlTPTrELA~QiaEQF~alGk~l~lK~~vivGG~d~i~qa~---------------------~L~~rPHvVvatP 133 (442)
T KOG0340|consen 75 GIFALVLTPTRELALQIAEQFIALGKLLNLKVSVIVGGTDMIMQAA---------------------ILSDRPHVVVATP 133 (442)
T ss_pred cceEEEecchHHHHHHHHHHHHHhcccccceEEEEEccHHHhhhhh---------------------hcccCCCeEecCc
Confidence 5579999999999999999999999999999999999987655533 5678889999999
Q ss_pred HHHHHHHhhcCC---CCCCCccEEEEecchhhhhHhHHhHHHHHHHhhhccccccccccccccccccccccccccccccc
Q 017196 181 GRLMDHINATRG---FTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVER 257 (375)
Q Consensus 181 ~~l~~~l~~~~~---~~~~~~~~vIiDE~h~l~~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (375)
+++.+++..+.. ..+.+++++|+||||.+++..|...|..+.+.+|.
T Consensus 134 GRlad~l~sn~~~~~~~~~rlkflVlDEADrvL~~~f~d~L~~i~e~lP~------------------------------ 183 (442)
T KOG0340|consen 134 GRLADHLSSNLGVCSWIFQRLKFLVLDEADRVLAGCFPDILEGIEECLPK------------------------------ 183 (442)
T ss_pred cccccccccCCccchhhhhceeeEEecchhhhhccchhhHHhhhhccCCC------------------------------
Confidence 999999988643 34889999999999999999999999999988887
Q ss_pred CCCCCCCCceeEEEEEEecCCCchhhhccccCCCeEEec-CCccccCcccceeEEEeccCCCcHHHHHHHHHhcC---CC
Q 017196 258 GFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTT-GETRYKLPERLESYKLICESKLKPLYLVALLQSLG---EE 333 (375)
Q Consensus 258 ~~~~~~~~~~q~i~~SATl~~~~~~~~~~~~~~~~~i~~-~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~---~~ 333 (375)
..|.++||||+++.+..+...-...+..... ..........+.+.|+.++...|...++.+++.+. .+
T Consensus 184 --------~RQtLlfSATitd~i~ql~~~~i~k~~a~~~e~~~~vstvetL~q~yI~~~~~vkdaYLv~~Lr~~~~~~~~ 255 (442)
T KOG0340|consen 184 --------PRQTLLFSATITDTIKQLFGCPITKSIAFELEVIDGVSTVETLYQGYILVSIDVKDAYLVHLLRDFENKENG 255 (442)
T ss_pred --------ccceEEEEeehhhHHHHhhcCCcccccceEEeccCCCCchhhhhhheeecchhhhHHHHHHHHhhhhhccCc
Confidence 4578999999998888776555544222222 22333566778899999999999999999999874 46
Q ss_pred eEEEEcCChhhHHHHHHHHHHhcCCcceEEecccccccccc
Q 017196 334 KCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVR 374 (375)
Q Consensus 334 k~lIF~~s~~~a~~l~~~L~~~g~~~~~~~~lh~~~~~~~R 374 (375)
.++||+|+..+|+.++..|+. .++.+..+||.|++++|
T Consensus 256 simIFvnttr~cQ~l~~~l~~---le~r~~~lHs~m~Q~eR 293 (442)
T KOG0340|consen 256 SIMIFVNTTRECQLLSMTLKN---LEVRVVSLHSQMPQKER 293 (442)
T ss_pred eEEEEeehhHHHHHHHHHHhh---hceeeeehhhcchHHHH
Confidence 899999999999999999994 45999999999999998
No 22
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=8.5e-40 Score=303.42 Aligned_cols=341 Identities=40% Similarity=0.647 Sum_probs=272.3
Q ss_pred CCcCCCcCCCCccC-----ccccCCCCCC----CCCCHHHHHHHHhCCCCCccHhhHHHHHHhhCC-----CCCCCCEEE
Q 017196 9 MPVLPWMRSPVDVS-----LFEDCPLDHL----PCLDPRLKVALQNMGISSLFPVQVAVWQETIGP-----GLFERDLCI 74 (375)
Q Consensus 9 ~~~~~~~~~~~~~~-----~~~~~~~~~~----~~l~~~i~~~l~~~g~~~~~~~Q~~~~~~~~~~-----~~~~~~~ii 74 (375)
|+.-.|..+|..+. -|+.++.++. +.+...+.+.+.++++...+|+|...++++++. -..++|+.|
T Consensus 109 ~~lp~wva~p~t~~~nslq~~s~l~~se~k~~~d~lea~~~q~l~k~~is~~FPVQ~aVlp~ll~~~~~p~~~r~rDIcV 188 (620)
T KOG0350|consen 109 VELPGWVAIPETAQNNSLQIFSVLGKSEMKNLEDTLEATIDQLLVKMAISRLFPVQYAVLPSLLEEIRSPPPSRPRDICV 188 (620)
T ss_pred ccCcccccCceecCCCceeeeeccchhHHHHHHHHHHHHHHHHHHHhhcccccchHHHHHHHHHHhhcCCCCCCCCceEE
Confidence 33333888877544 4566663332 112233455589999999999999999998643 335789999
Q ss_pred ECCCCCchHHHhHHHHHHHhhhcccCCceEEEEcccHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHHhhcCcc
Q 017196 75 NSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKL 154 (375)
Q Consensus 75 ~a~TGsGKTl~~~l~il~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 154 (375)
.||||||||+||.+|+++.+..+..+.-|++||+||++|+.|+++.+.+++...|+.|+.+.|..+...+.+.+.+.+.
T Consensus 189 ~ApTGSGKTLaY~iPIVQ~L~~R~v~~LRavVivPtr~L~~QV~~~f~~~~~~tgL~V~~~sgq~sl~~E~~qL~~~~~- 267 (620)
T KOG0350|consen 189 NAPTGSGKTLAYVIPIVQLLSSRPVKRLRAVVIVPTRELALQVYDTFKRLNSGTGLAVCSLSGQNSLEDEARQLASDPP- 267 (620)
T ss_pred ecCCCCCceeeehhHHHHHHccCCccceEEEEEeeHHHHHHHHHHHHHHhccCCceEEEecccccchHHHHHHHhcCCC-
Confidence 9999999999999999999999888888999999999999999999999999999999999999999888776555431
Q ss_pred ccCccCCchhHHHhhcCCCcEEEeCcHHHHHHHhhcCCCCCCCccEEEEecchhhhhHhHHhHHHHHHHhhhcccc----
Q 017196 155 EAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNE---- 230 (375)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~IiV~Tp~~l~~~l~~~~~~~~~~~~~vIiDE~h~l~~~~~~~~l~~i~~~l~~~~~---- 230 (375)
....||+|+||++|.+++++.+.+++++++++||||||+|++..|+.++..++.++...+.
T Consensus 268 ---------------~~~~DIlVaTPGRLVDHl~~~k~f~Lk~LrfLVIDEADRll~qsfQ~Wl~~v~~~~~~~k~~~~~ 332 (620)
T KOG0350|consen 268 ---------------ECRIDILVATPGRLVDHLNNTKSFDLKHLRFLVIDEADRLLDQSFQEWLDTVMSLCKTMKRVACL 332 (620)
T ss_pred ---------------ccccceEEcCchHHHHhccCCCCcchhhceEEEechHHHHHHHHHHHHHHHHHHHhCCchhhcCh
Confidence 1246999999999999999888999999999999999999999999999999999887522
Q ss_pred -cccccccccccccccccccccccccccCCCCCCCCceeEEEEEEecCCCchhhhccccCCCeEEecC---CccccCccc
Q 017196 231 -NRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTG---ETRYKLPER 306 (375)
Q Consensus 231 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~~~~~~~~~~~~~~~i~~~---~~~~~~~~~ 306 (375)
+-....+...+.... .-...-...++..+.+++|||++.+...+....++.|....+. ...+.+|..
T Consensus 333 ~nii~~~~~~~pt~~~---------e~~t~~~~~~~~l~kL~~satLsqdP~Kl~~l~l~~Prl~~v~~~~~~ryslp~~ 403 (620)
T KOG0350|consen 333 DNIIRQRQAPQPTVLS---------ELLTKLGKLYPPLWKLVFSATLSQDPSKLKDLTLHIPRLFHVSKPLIGRYSLPSS 403 (620)
T ss_pred hhhhhhcccCCchhhH---------HHHhhcCCcCchhHhhhcchhhhcChHHHhhhhcCCCceEEeecccceeeecChh
Confidence 100000000000000 0000113445677889999999999899988888888555444 366788999
Q ss_pred ceeEEEeccCCCcHHHHHHHHHhcCCCeEEEEcCChhhHHHHHHHHH-HhcCCcceEEecccccccccc
Q 017196 307 LESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLN-HFGELRIKIKEYSGLQRQSVR 374 (375)
Q Consensus 307 i~~~~~~~~~~~k~~~l~~ll~~~~~~k~lIF~~s~~~a~~l~~~L~-~~g~~~~~~~~lh~~~~~~~R 374 (375)
+.|+.+.++...|...++.+|+.....++|+|+++.+.+.+++..|+ .+++.+.++.+++|+++.+.|
T Consensus 404 l~~~~vv~~~~~kpl~~~~lI~~~k~~r~lcf~~S~~sa~Rl~~~L~v~~~~~~~~~s~~t~~l~~k~r 472 (620)
T KOG0350|consen 404 LSHRLVVTEPKFKPLAVYALITSNKLNRTLCFVNSVSSANRLAHVLKVEFCSDNFKVSEFTGQLNGKRR 472 (620)
T ss_pred hhhceeecccccchHhHHHHHHHhhcceEEEEecchHHHHHHHHHHHHHhccccchhhhhhhhhhHHHH
Confidence 99999999999999999999999999999999999999999999998 677777889999999988766
No 23
>PTZ00424 helicase 45; Provisional
Probab=100.00 E-value=2.4e-38 Score=307.26 Aligned_cols=280 Identities=21% Similarity=0.328 Sum_probs=230.2
Q ss_pred cCccccCCCCCCCCCCHHHHHHHHhCCCCCccHhhHHHHHHhhCCCCCCCCEEEECCCCCchHHHhHHHHHHHhhhcccC
Q 017196 21 VSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVR 100 (375)
Q Consensus 21 ~~~~~~~~~~~~~~l~~~i~~~l~~~g~~~~~~~Q~~~~~~~~~~~~~~~~~ii~a~TGsGKTl~~~l~il~~l~~~~~~ 100 (375)
+.+|++++ +++.+.+++.+.||..|+++|.+|++.++ +|+|++++||||||||++|++|++..+... ..
T Consensus 27 ~~~~~~l~------l~~~~~~~l~~~~~~~~~~~Q~~ai~~i~----~~~d~ii~apTGsGKT~~~~l~~l~~~~~~-~~ 95 (401)
T PTZ00424 27 VDSFDALK------LNEDLLRGIYSYGFEKPSAIQQRGIKPIL----DGYDTIGQAQSGTGKTATFVIAALQLIDYD-LN 95 (401)
T ss_pred cCCHhhCC------CCHHHHHHHHHcCCCCCCHHHHHHHHHHh----CCCCEEEECCCCChHHHHHHHHHHHHhcCC-CC
Confidence 46788888 99999999999999999999999998877 689999999999999999999999888643 24
Q ss_pred CceEEEEcccHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcCCCcEEEeCc
Q 017196 101 CLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATP 180 (375)
Q Consensus 101 ~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiV~Tp 180 (375)
+.++||++||++|+.|+.+.+..++...++.+..+.|+....... ..+..+++|+|+||
T Consensus 96 ~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~---------------------~~~~~~~~Ivv~Tp 154 (401)
T PTZ00424 96 ACQALILAPTRELAQQIQKVVLALGDYLKVRCHACVGGTVVRDDI---------------------NKLKAGVHMVVGTP 154 (401)
T ss_pred CceEEEECCCHHHHHHHHHHHHHHhhhcCceEEEEECCcCHHHHH---------------------HHHcCCCCEEEECc
Confidence 568999999999999999999999887788888888887654443 24556689999999
Q ss_pred HHHHHHHhhcCCCCCCCccEEEEecchhhhhHhHHhHHHHHHHhhhcccccccccccccccccccccccccccccccCCC
Q 017196 181 GRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFK 260 (375)
Q Consensus 181 ~~l~~~l~~~~~~~~~~~~~vIiDE~h~l~~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (375)
+++.+++.+ +.+.++++++|||||+|++.+.+|...+..++..++.
T Consensus 155 ~~l~~~l~~-~~~~l~~i~lvViDEah~~~~~~~~~~~~~i~~~~~~--------------------------------- 200 (401)
T PTZ00424 155 GRVYDMIDK-RHLRVDDLKLFILDEADEMLSRGFKGQIYDVFKKLPP--------------------------------- 200 (401)
T ss_pred HHHHHHHHh-CCcccccccEEEEecHHHHHhcchHHHHHHHHhhCCC---------------------------------
Confidence 999999887 5577899999999999999988887777766665544
Q ss_pred CCCCCceeEEEEEEecCCCchhhhccccCCCeEEecCCccccCcccceeEEEeccC-CCcHHHHHHHHHhcCCCeEEEEc
Q 017196 261 DKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICES-KLKPLYLVALLQSLGEEKCIVFT 339 (375)
Q Consensus 261 ~~~~~~~q~i~~SATl~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~~~~~~~-~~k~~~l~~ll~~~~~~k~lIF~ 339 (375)
+.|++++|||++.....+...++.++..+.+..... ....+.+++..+.. ..+...+..++......++||||
T Consensus 201 -----~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivF~ 274 (401)
T PTZ00424 201 -----DVQVALFSATMPNEILELTTKFMRDPKRILVKKDEL-TLEGIRQFYVAVEKEEWKFDTLCDLYETLTITQAIIYC 274 (401)
T ss_pred -----CcEEEEEEecCCHHHHHHHHHHcCCCEEEEeCCCCc-ccCCceEEEEecChHHHHHHHHHHHHHhcCCCeEEEEe
Confidence 678999999999888777777877777665544332 23445566555543 34667777777777777999999
Q ss_pred CChhhHHHHHHHHHHhcCCcceEEeccccccccccC
Q 017196 340 SSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRR 375 (375)
Q Consensus 340 ~s~~~a~~l~~~L~~~g~~~~~~~~lh~~~~~~~R~ 375 (375)
+++++|+.+++.|.. .++.+..+||+|++.+|.
T Consensus 275 ~t~~~~~~l~~~l~~---~~~~~~~~h~~~~~~~R~ 307 (401)
T PTZ00424 275 NTRRKVDYLTKKMHE---RDFTVSCMHGDMDQKDRD 307 (401)
T ss_pred cCcHHHHHHHHHHHH---CCCcEEEEeCCCCHHHHH
Confidence 999999999999994 458999999999998873
No 24
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.3e-39 Score=304.88 Aligned_cols=291 Identities=26% Similarity=0.360 Sum_probs=250.9
Q ss_pred cCCCCccCccccCCCCCCCCCCHHHHHHHHhCCCCCccHhhHHHHHHhhCCCCCCCCEEEECCCCCchHHHhHHHHHHHh
Q 017196 15 MRSPVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94 (375)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~l~~~i~~~l~~~g~~~~~~~Q~~~~~~~~~~~~~~~~~ii~a~TGsGKTl~~~l~il~~l 94 (375)
...|.++..|.+.. +++.+...++..|+..|+|+|+.++ +.+..|++++.||+||+|||.||++|++..+
T Consensus 67 ~~~p~~i~~f~~~~------l~~~l~~ni~~~~~~~ptpvQk~si----p~i~~Grdl~acAqTGsGKT~aFLiPii~~~ 136 (482)
T KOG0335|consen 67 RDVPPHIPTFDEAI------LGEALAGNIKRSGYTKPTPVQKYSI----PIISGGRDLMACAQTGSGKTAAFLIPIISYL 136 (482)
T ss_pred CccCCCcccccccc------hhHHHhhccccccccCCCcceeecc----ceeecCCceEEEccCCCcchHHHHHHHHHHH
Confidence 34466666777666 8899999999999999999999985 4555899999999999999999999999999
Q ss_pred hhccc---------CCceEEEEcccHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHHhhcCccccCccCCchhH
Q 017196 95 SNRAV---------RCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDV 165 (375)
Q Consensus 95 ~~~~~---------~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (375)
.+... ..|+++|++||+|||.|++.+.+++.-..+++++.++|+.+...+.
T Consensus 137 ~~~~~~~~~~~~~~~~P~~lIlapTReL~~Qi~nea~k~~~~s~~~~~~~ygg~~~~~q~-------------------- 196 (482)
T KOG0335|consen 137 LDEGPEDRGESGGGVYPRALILAPTRELVDQIYNEARKFSYLSGMKSVVVYGGTDLGAQL-------------------- 196 (482)
T ss_pred HhcCcccCcccCCCCCCceEEEeCcHHHhhHHHHHHHhhcccccceeeeeeCCcchhhhh--------------------
Confidence 87642 3589999999999999999999999988899999999997665553
Q ss_pred HHhhcCCCcEEEeCcHHHHHHHhhcCCCCCCCccEEEEecchhhhh-HhHHhHHHHHHHhhhcccccccccccccccccc
Q 017196 166 LQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLR-EAYQAWLPTVLQLTRSDNENRFSDASTFLPSAF 244 (375)
Q Consensus 166 ~~~~~~~~~IiV~Tp~~l~~~l~~~~~~~~~~~~~vIiDE~h~l~~-~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~ 244 (375)
+.+.++|+|+|+||++|.+++.+ +.+.+..++++|+||||.|++ .+|.+.+..|+........+
T Consensus 197 -~~~~~gcdIlvaTpGrL~d~~e~-g~i~l~~~k~~vLDEADrMlD~mgF~p~Ir~iv~~~~~~~~~------------- 261 (482)
T KOG0335|consen 197 -RFIKRGCDILVATPGRLKDLIER-GKISLDNCKFLVLDEADRMLDEMGFEPQIRKIVEQLGMPPKN------------- 261 (482)
T ss_pred -hhhccCccEEEecCchhhhhhhc-ceeehhhCcEEEecchHHhhhhccccccHHHHhcccCCCCcc-------------
Confidence 36678999999999999999998 679999999999999999999 68999999999887664443
Q ss_pred cccccccccccccCCCCCCCCceeEEEEEEecCCCchhhhccccCC-CeEEecCCccccCcccceeEEEeccCCCcHHHH
Q 017196 245 GSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHH-PLFLTTGETRYKLPERLESYKLICESKLKPLYL 323 (375)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~i~~~~~~~~~~~k~~~l 323 (375)
+.|.++||||+|..+..++..++.+ +..+.+..-. ..+.++.+....+.+.+|...|
T Consensus 262 ---------------------~~qt~mFSAtfp~~iq~l~~~fl~~~yi~laV~rvg-~~~~ni~q~i~~V~~~~kr~~L 319 (482)
T KOG0335|consen 262 ---------------------NRQTLLFSATFPKEIQRLAADFLKDNYIFLAVGRVG-STSENITQKILFVNEMEKRSKL 319 (482)
T ss_pred ---------------------ceeEEEEeccCChhhhhhHHHHhhccceEEEEeeec-cccccceeEeeeecchhhHHHH
Confidence 7899999999999999988888875 7777666544 3467888999999999999999
Q ss_pred HHHHHhcC----C-----CeEEEEcCChhhHHHHHHHHHHhcCCcceEEeccccccccccC
Q 017196 324 VALLQSLG----E-----EKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRR 375 (375)
Q Consensus 324 ~~ll~~~~----~-----~k~lIF~~s~~~a~~l~~~L~~~g~~~~~~~~lh~~~~~~~R~ 375 (375)
.+++.... . ++++|||++++.|..++.+|... ++++..+||+-++.||.
T Consensus 320 ldll~~~~~~~~~~~~~~e~tlvFvEt~~~~d~l~~~l~~~---~~~~~sIhg~~tq~er~ 377 (482)
T KOG0335|consen 320 LDLLNKDDGPPSDGEPKWEKTLVFVETKRGADELAAFLSSN---GYPAKSIHGDRTQIERE 377 (482)
T ss_pred HHHhhcccCCcccCCcccceEEEEeeccchhhHHHHHHhcC---CCCceeecchhhhhHHH
Confidence 99888442 2 38999999999999999999954 49999999999999883
No 25
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.3e-38 Score=295.81 Aligned_cols=285 Identities=26% Similarity=0.395 Sum_probs=247.9
Q ss_pred CCCCccCccccCCCCCCCCCCHHHHHHHHhCCCCCccHhhHHHHHHhhCCCCCCCCEEEECCCCCchHHHhHHHHHHHhh
Q 017196 16 RSPVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLS 95 (375)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~l~~~i~~~l~~~g~~~~~~~Q~~~~~~~~~~~~~~~~~ii~a~TGsGKTl~~~l~il~~l~ 95 (375)
.-|.++++|++++ .++.+..+..+.-|.+|+|+|.++++ ...+|++++-.|-||||||.||+.|++..+.
T Consensus 217 s~~rpvtsfeh~g------fDkqLm~airk~Ey~kptpiq~qalp----talsgrdvigIAktgSgktaAfi~pm~~him 286 (731)
T KOG0339|consen 217 SPPRPVTSFEHFG------FDKQLMTAIRKSEYEKPTPIQCQALP----TALSGRDVIGIAKTGSGKTAAFIWPMIVHIM 286 (731)
T ss_pred CCCCCcchhhhcC------chHHHHHHHhhhhcccCCcccccccc----cccccccchheeeccCcchhHHHHHHHHHhc
Confidence 3488999999999 89999999999999999999999854 4458999999999999999999999999887
Q ss_pred hcc----cCCceEEEEcccHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcC
Q 017196 96 NRA----VRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQS 171 (375)
Q Consensus 96 ~~~----~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (375)
..+ ..+|..+|++||++||.|++.++++|++.++++++++|||.+..++.+ .+..
T Consensus 287 dq~eL~~g~gPi~vilvPTrela~Qi~~eaKkf~K~ygl~~v~~ygGgsk~eQ~k---------------------~Lk~ 345 (731)
T KOG0339|consen 287 DQPELKPGEGPIGVILVPTRELASQIFSEAKKFGKAYGLRVVAVYGGGSKWEQSK---------------------ELKE 345 (731)
T ss_pred chhhhcCCCCCeEEEEeccHHHHHHHHHHHHHhhhhccceEEEeecCCcHHHHHH---------------------hhhc
Confidence 642 467899999999999999999999999999999999999998777754 6678
Q ss_pred CCcEEEeCcHHHHHHHhhcCCCCCCCccEEEEecchhhhhHhHHhHHHHHHHhhhccccccccccccccccccccccccc
Q 017196 172 AVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIR 251 (375)
Q Consensus 172 ~~~IiV~Tp~~l~~~l~~~~~~~~~~~~~vIiDE~h~l~~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (375)
++.|||+||++|++++.- +..++..+.++|+||+|+|++.+|...+..|.+++++
T Consensus 346 g~EivVaTPgRlid~Vkm-Katn~~rvS~LV~DEadrmfdmGfe~qVrSI~~hirp------------------------ 400 (731)
T KOG0339|consen 346 GAEIVVATPGRLIDMVKM-KATNLSRVSYLVLDEADRMFDMGFEPQVRSIKQHIRP------------------------ 400 (731)
T ss_pred CCeEEEechHHHHHHHHh-hcccceeeeEEEEechhhhhccccHHHHHHHHhhcCC------------------------
Confidence 899999999999999998 6789999999999999999999999999999999988
Q ss_pred ccccccCCCCCCCCceeEEEEEEecCCCchhhhccccCCCeEEecCCccccCcccceeEEEeccC-CCcHHHHHHHHHhc
Q 017196 252 RCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICES-KLKPLYLVALLQSL 330 (375)
Q Consensus 252 ~~~~~~~~~~~~~~~~q~i~~SATl~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~~~~~~~-~~k~~~l~~ll~~~ 330 (375)
++|.++||||++..+..+++.++.+|+.+....-. .....|.+.+.+|.. ..|...|..-|-.+
T Consensus 401 --------------drQtllFsaTf~~kIe~lard~L~dpVrvVqg~vg-ean~dITQ~V~V~~s~~~Kl~wl~~~L~~f 465 (731)
T KOG0339|consen 401 --------------DRQTLLFSATFKKKIEKLARDILSDPVRVVQGEVG-EANEDITQTVSVCPSEEKKLNWLLRHLVEF 465 (731)
T ss_pred --------------cceEEEeeccchHHHHHHHHHHhcCCeeEEEeehh-ccccchhheeeeccCcHHHHHHHHHHhhhh
Confidence 77899999999999999999999999988766332 233456666666654 45665555544443
Q ss_pred -CCCeEEEEcCChhhHHHHHHHHHHhcCCcceEEecccccccccc
Q 017196 331 -GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVR 374 (375)
Q Consensus 331 -~~~k~lIF~~s~~~a~~l~~~L~~~g~~~~~~~~lh~~~~~~~R 374 (375)
..+++|||+..+.++++++..|+- .++.|..+||+|.+.+|
T Consensus 466 ~S~gkvlifVTKk~~~e~i~a~Lkl---k~~~v~llhgdkdqa~r 507 (731)
T KOG0339|consen 466 SSEGKVLIFVTKKADAEEIAANLKL---KGFNVSLLHGDKDQAER 507 (731)
T ss_pred ccCCcEEEEEeccCCHHHHHHHhcc---ccceeeeecCchhhHHH
Confidence 567999999999999999999994 45999999999998887
No 26
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=5e-39 Score=301.19 Aligned_cols=290 Identities=31% Similarity=0.400 Sum_probs=235.9
Q ss_pred CCCCccCccccCCCCCCCCCCHHHHHHHHhCCCCCccHhhHHHHHHhhCCCCCC-CCEEEECCCCCchHHHhHHHHHHHh
Q 017196 16 RSPVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFE-RDLCINSPTGSGKTLSYALPIVQTL 94 (375)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~l~~~i~~~l~~~g~~~~~~~Q~~~~~~~~~~~~~~-~~~ii~a~TGsGKTl~~~l~il~~l 94 (375)
..+.+++-|.+++ |+..++++|.++||..|+++|...++.++ .| .|++-.|.||||||+||.+|+++.+
T Consensus 175 ~~~~DvsAW~~l~------lp~~iL~aL~~~gFs~Pt~IQsl~lp~ai----~gk~DIlGaAeTGSGKTLAFGIPiv~~l 244 (731)
T KOG0347|consen 175 SSKVDVSAWKNLF------LPMEILRALSNLGFSRPTEIQSLVLPAAI----RGKVDILGAAETGSGKTLAFGIPIVERL 244 (731)
T ss_pred ccccChHHHhcCC------CCHHHHHHHHhcCCCCCccchhhcccHhh----ccchhcccccccCCCceeeecchhhhhh
Confidence 3467788888888 99999999999999999999999876655 56 7999999999999999999999965
Q ss_pred hhcc----------cCCce--EEEEcccHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHHhhcCccccCccCCc
Q 017196 95 SNRA----------VRCLR--ALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDP 162 (375)
Q Consensus 95 ~~~~----------~~~~~--~lil~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (375)
.... .++++ +||++||||||.|+.+.+..+++..++++..++||.....+.+
T Consensus 245 ~~~s~~s~e~~~~~~k~~k~~~LV~tPTRELa~QV~~Hl~ai~~~t~i~v~si~GGLavqKQqR---------------- 308 (731)
T KOG0347|consen 245 LESSDDSQELSNTSAKYVKPIALVVTPTRELAHQVKQHLKAIAEKTQIRVASITGGLAVQKQQR---------------- 308 (731)
T ss_pred hhccchHhhhhhHHhccCcceeEEecChHHHHHHHHHHHHHhccccCeEEEEeechhHHHHHHH----------------
Confidence 4321 23344 9999999999999999999999999999999999987766543
Q ss_pred hhHHHhhcCCCcEEEeCcHHHHHHHhhcCC--CCCCCccEEEEecchhhhhHhHHhHHHHHHHhhhcccccccccccccc
Q 017196 163 EDVLQELQSAVDILVATPGRLMDHINATRG--FTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFL 240 (375)
Q Consensus 163 ~~~~~~~~~~~~IiV~Tp~~l~~~l~~~~~--~~~~~~~~vIiDE~h~l~~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~ 240 (375)
.+...++|+|+||++|++++..... -.+++++++|+||+|+|+..++-+.+..+++.+.....+
T Consensus 309 -----lL~~~p~IVVATPGRlweli~e~n~~l~~~k~vkcLVlDEaDRmvekghF~Els~lL~~L~e~~~~--------- 374 (731)
T KOG0347|consen 309 -----LLNQRPDIVVATPGRLWELIEEDNTHLGNFKKVKCLVLDEADRMVEKGHFEELSKLLKHLNEEQKN--------- 374 (731)
T ss_pred -----HHhcCCCEEEecchHHHHHHHhhhhhhhhhhhceEEEEccHHHHhhhccHHHHHHHHHHhhhhhcc---------
Confidence 4556789999999999999987433 248899999999999999999888899999888732211
Q ss_pred cccccccccccccccccCCCCCCCCceeEEEEEEecCCCc---------------------hhhhcc-cc-CCCeEEecC
Q 017196 241 PSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDP---------------------NKLAQL-DL-HHPLFLTTG 297 (375)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~~---------------------~~~~~~-~~-~~~~~i~~~ 297 (375)
...|.+.||||++-.. +.++.. .+ .+|..+...
T Consensus 375 ------------------------~qrQTlVFSATlt~~~~~~~~~~~k~~~k~~~~~~kiq~Lmk~ig~~~kpkiiD~t 430 (731)
T KOG0347|consen 375 ------------------------RQRQTLVFSATLTLVLQQPLSSSRKKKDKEDELNAKIQHLMKKIGFRGKPKIIDLT 430 (731)
T ss_pred ------------------------cccceEEEEEEeehhhcChhHHhhhccchhhhhhHHHHHHHHHhCccCCCeeEecC
Confidence 1568999999997311 112221 22 356666665
Q ss_pred CccccCcccceeEEEeccCCCcHHHHHHHHHhcCCCeEEEEcCChhhHHHHHHHHHHhcCCcceEEecccccccccc
Q 017196 298 ETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVR 374 (375)
Q Consensus 298 ~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~k~lIF~~s~~~a~~l~~~L~~~g~~~~~~~~lh~~~~~~~R 374 (375)
... .....+.+..+.|+..+|.-.|+.+|.+|++ ++|||||+++.++.++-+|+ ..+++...+|+.|.+++|
T Consensus 431 ~q~-~ta~~l~Es~I~C~~~eKD~ylyYfl~ryPG-rTlVF~NsId~vKRLt~~L~---~L~i~p~~LHA~M~QKqR 502 (731)
T KOG0347|consen 431 PQS-ATASTLTESLIECPPLEKDLYLYYFLTRYPG-RTLVFCNSIDCVKRLTVLLN---NLDIPPLPLHASMIQKQR 502 (731)
T ss_pred cch-hHHHHHHHHhhcCCccccceeEEEEEeecCC-ceEEEechHHHHHHHHHHHh---hcCCCCchhhHHHHHHHH
Confidence 554 3345667777788888888888888888886 89999999999999999999 555999999999999987
No 27
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.5e-37 Score=290.49 Aligned_cols=297 Identities=33% Similarity=0.473 Sum_probs=239.6
Q ss_pred CccccCCCCCCCCCCHHHHHHHH-hCCCCCccHhhHHHHHHhhCCCCCCCCEEEECCCCCchHHHhHHHHHHHhhhcc--
Q 017196 22 SLFEDCPLDHLPCLDPRLKVALQ-NMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRA-- 98 (375)
Q Consensus 22 ~~~~~~~~~~~~~l~~~i~~~l~-~~g~~~~~~~Q~~~~~~~~~~~~~~~~~ii~a~TGsGKTl~~~l~il~~l~~~~-- 98 (375)
..|..++ |++-+...|+ .+++..|+.+|.+++|.++ +|+|++|.++||||||++|++|+++.+..-.
T Consensus 136 ~~f~~LG------L~~~lv~~L~~~m~i~~pTsVQkq~IP~lL----~grD~lV~aQTGSGKTLAYllPiVq~Lq~m~~k 205 (708)
T KOG0348|consen 136 AAFASLG------LHPHLVSHLNTKMKISAPTSVQKQAIPVLL----EGRDALVRAQTGSGKTLAYLLPIVQSLQAMEPK 205 (708)
T ss_pred ccchhcC------CCHHHHHHHHHHhccCccchHhhcchhhhh----cCcceEEEcCCCCcccHHHHHHHHHHHHhcCcc
Confidence 3566666 9999999996 4899999999999977776 6999999999999999999999999996632
Q ss_pred ---cCCceEEEEcccHHHHHHHHHHHHHhccccC-ceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcCCCc
Q 017196 99 ---VRCLRALVVLPTRDLALQVKDVFAAIAPAVG-LSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVD 174 (375)
Q Consensus 99 ---~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (375)
..++.||||+||||||.|+|..++++...+. +=.+.+.||..-+.+. ..+..|++
T Consensus 206 i~Rs~G~~ALVivPTREL~~Q~y~~~qKLl~~~hWIVPg~lmGGEkkKSEK---------------------ARLRKGiN 264 (708)
T KOG0348|consen 206 IQRSDGPYALVIVPTRELALQIYETVQKLLKPFHWIVPGVLMGGEKKKSEK---------------------ARLRKGIN 264 (708)
T ss_pred ccccCCceEEEEechHHHHHHHHHHHHHHhcCceEEeeceeecccccccHH---------------------HHHhcCce
Confidence 4578899999999999999999999987663 4445666766554443 25788999
Q ss_pred EEEeCcHHHHHHHhhcCCCCCCCccEEEEecchhhhhHhHHhHHHHHHHhhhcccccccccccccccccccccccccccc
Q 017196 175 ILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCG 254 (375)
Q Consensus 175 IiV~Tp~~l~~~l~~~~~~~~~~~~~vIiDE~h~l~~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (375)
|+|+||++|.+.+.+...+.++.+.+||+||+|.+++-+|...+..|++.+......
T Consensus 265 ILIgTPGRLvDHLknT~~i~~s~LRwlVlDEaDrlleLGfekdit~Il~~v~~~~~~----------------------- 321 (708)
T KOG0348|consen 265 ILIGTPGRLVDHLKNTKSIKFSRLRWLVLDEADRLLELGFEKDITQILKAVHSIQNA----------------------- 321 (708)
T ss_pred EEEcCchHHHHHHhccchheeeeeeEEEecchhHHHhccchhhHHHHHHHHhhccch-----------------------
Confidence 999999999999999899999999999999999999999999999999998552110
Q ss_pred cccCCC-CCCCCceeEEEEEEecCCCchhhhccccCCCeEEecCC------------------------ccccCccccee
Q 017196 255 VERGFK-DKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGE------------------------TRYKLPERLES 309 (375)
Q Consensus 255 ~~~~~~-~~~~~~~q~i~~SATl~~~~~~~~~~~~~~~~~i~~~~------------------------~~~~~~~~i~~ 309 (375)
++. ...+...|.+++|||+++.+..+...-+.+|+++..+. .....|..+.+
T Consensus 322 ---e~~~~~lp~q~q~mLlSATLtd~V~rLa~~sLkDpv~I~ld~s~~~~~p~~~a~~ev~~~~~~~~l~~~~iPeqL~q 398 (708)
T KOG0348|consen 322 ---ECKDPKLPHQLQNMLLSATLTDGVNRLADLSLKDPVYISLDKSHSQLNPKDKAVQEVDDGPAGDKLDSFAIPEQLLQ 398 (708)
T ss_pred ---hcccccccHHHHhHhhhhhhHHHHHHHhhccccCceeeeccchhhhcCcchhhhhhcCCcccccccccccCcHHhhh
Confidence 111 11122568899999999999999999999999987321 11345667788
Q ss_pred EEEeccCCCcHHHHHHHHHh----cCCCeEEEEcCChhhHHHHHHHHHHhc-C------------------CcceEEecc
Q 017196 310 YKLICESKLKPLYLVALLQS----LGEEKCIVFTSSVESTHRLCTLLNHFG-E------------------LRIKIKEYS 366 (375)
Q Consensus 310 ~~~~~~~~~k~~~l~~ll~~----~~~~k~lIF~~s~~~a~~l~~~L~~~g-~------------------~~~~~~~lh 366 (375)
.|..++..-+...|..+|.. +...++|||..+.+.++.=+..|...- . .+.++.-+|
T Consensus 399 ry~vVPpKLRLV~Laa~L~~~~k~~~~qk~iVF~S~~d~VeFHy~lf~~~l~~~~e~~s~~~~s~g~~~l~~~~k~~rLH 478 (708)
T KOG0348|consen 399 RYTVVPPKLRLVALAALLLNKVKFEEKQKMIVFFSCSDSVEFHYSLFSEALLSHLEGSSGAPDSEGLPPLFMDLKFYRLH 478 (708)
T ss_pred ceEecCCchhHHHHHHHHHHHhhhhhhceeEEEEechhHHHHHHHHHHhhhhcccccccCCcccCCChhhhhcceEEEec
Confidence 88889988888888777764 345589999999999998888775321 0 145788899
Q ss_pred ccccccccC
Q 017196 367 GLQRQSVRR 375 (375)
Q Consensus 367 ~~~~~~~R~ 375 (375)
|+|++++|.
T Consensus 479 Gsm~QeeRt 487 (708)
T KOG0348|consen 479 GSMEQEERT 487 (708)
T ss_pred CchhHHHHH
Confidence 999999983
No 28
>KOG0334 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.2e-37 Score=310.40 Aligned_cols=288 Identities=27% Similarity=0.422 Sum_probs=254.2
Q ss_pred cCCCCccCccccCCCCCCCCCCHHHHHHHHhCCCCCccHhhHHHHHHhhCCCCCCCCEEEECCCCCchHHHhHHHHHHHh
Q 017196 15 MRSPVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94 (375)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~l~~~i~~~l~~~g~~~~~~~Q~~~~~~~~~~~~~~~~~ii~a~TGsGKTl~~~l~il~~l 94 (375)
..-|.|+++|..++ +...+++-++++|+..|+++|.+|||.++ +|+|+|.+|-||||||++|++|++..+
T Consensus 358 ~~~pkpv~sW~q~g------l~~~il~tlkkl~y~k~~~IQ~qAiP~Im----sGrdvIgvakTgSGKT~af~LPmirhi 427 (997)
T KOG0334|consen 358 KECPKPVTSWTQCG------LSSKILETLKKLGYEKPTPIQAQAIPAIM----SGRDVIGVAKTGSGKTLAFLLPMIRHI 427 (997)
T ss_pred CCCCcccchHhhCC------chHHHHHHHHHhcCCCCcchhhhhcchhc----cCcceEEeeccCCccchhhhcchhhhh
Confidence 45699999999999 99999999999999999999999977666 899999999999999999999999777
Q ss_pred hhcc----cCCceEEEEcccHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhc
Q 017196 95 SNRA----VRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQ 170 (375)
Q Consensus 95 ~~~~----~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (375)
+..+ ..+|-+||++||++|+.|+.+.++.|+...++.+++++|++....+.. .+.
T Consensus 428 ~dQr~~~~gdGPi~li~aPtrela~QI~r~~~kf~k~l~ir~v~vygg~~~~~qia---------------------elk 486 (997)
T KOG0334|consen 428 KDQRPLEEGDGPIALILAPTRELAMQIHREVRKFLKLLGIRVVCVYGGSGISQQIA---------------------ELK 486 (997)
T ss_pred hcCCChhhCCCceEEEEcCCHHHHHHHHHHHHHHHhhcCceEEEecCCccHHHHHH---------------------HHh
Confidence 6532 458899999999999999999999999999999999999998766654 677
Q ss_pred CCCcEEEeCcHHHHHHHhhc--CCCCCCCccEEEEecchhhhhHhHHhHHHHHHHhhhcccccccccccccccccccccc
Q 017196 171 SAVDILVATPGRLMDHINAT--RGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLK 248 (375)
Q Consensus 171 ~~~~IiV~Tp~~l~~~l~~~--~~~~~~~~~~vIiDE~h~l~~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~ 248 (375)
+++.|+||||+++.+.+-.+ +-..++.+.++|+||||.|++.+|.+.+..|++.+++
T Consensus 487 Rg~eIvV~tpGRmiD~l~~n~grvtnlrR~t~lv~deaDrmfdmgfePq~~~Ii~nlrp--------------------- 545 (997)
T KOG0334|consen 487 RGAEIVVCTPGRMIDILCANSGRVTNLRRVTYLVLDEADRMFDMGFEPQITRILQNLRP--------------------- 545 (997)
T ss_pred cCCceEEeccchhhhhHhhcCCccccccccceeeechhhhhheeccCcccchHHhhcch---------------------
Confidence 88999999999999877542 3345777779999999999988999999889999876
Q ss_pred cccccccccCCCCCCCCceeEEEEEEecCCCchhhhccccCCCeEEecCCccccCcccceeEEEecc-CCCcHHHHHHHH
Q 017196 249 TIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICE-SKLKPLYLVALL 327 (375)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~~~~~~-~~~k~~~l~~ll 327 (375)
..|.+++|||+|..+..+++..+..|+.+.+.... .+...+.+.+..+. +..|+..|.++|
T Consensus 546 -----------------drQtvlfSatfpr~m~~la~~vl~~Pveiiv~~~s-vV~k~V~q~v~V~~~e~eKf~kL~eLl 607 (997)
T KOG0334|consen 546 -----------------DRQTVLFSATFPRSMEALARKVLKKPVEIIVGGRS-VVCKEVTQVVRVCAIENEKFLKLLELL 607 (997)
T ss_pred -----------------hhhhhhhhhhhhHHHHHHHHHhhcCCeeEEEccce-eEeccceEEEEEecCchHHHHHHHHHH
Confidence 56789999999999999999999999998887444 56677888888887 889999999999
Q ss_pred Hhc-CCCeEEEEcCChhhHHHHHHHHHHhcCCcceEEeccccccccccC
Q 017196 328 QSL-GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRR 375 (375)
Q Consensus 328 ~~~-~~~k~lIF~~s~~~a~~l~~~L~~~g~~~~~~~~lh~~~~~~~R~ 375 (375)
..+ ...++||||.+.+.|..+.+.|+ ..|+.|..+||+.++.+|+
T Consensus 608 ~e~~e~~~tiiFv~~qe~~d~l~~~L~---~ag~~~~slHGgv~q~dR~ 653 (997)
T KOG0334|consen 608 GERYEDGKTIIFVDKQEKADALLRDLQ---KAGYNCDSLHGGVDQHDRS 653 (997)
T ss_pred HHHhhcCCEEEEEcCchHHHHHHHHHH---hcCcchhhhcCCCchHHHH
Confidence 865 56799999999999999999999 5569999999999999985
No 29
>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification]
Probab=100.00 E-value=3.1e-38 Score=284.91 Aligned_cols=285 Identities=24% Similarity=0.355 Sum_probs=241.7
Q ss_pred CCCCccCccccCCCCCCCCCCHHHHHHHHhCCCCCccHhhHHHHHHhhCCCCCCCCEEEECCCCCchHHHhHHHHHHHhh
Q 017196 16 RSPVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLS 95 (375)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~l~~~i~~~l~~~g~~~~~~~Q~~~~~~~~~~~~~~~~~ii~a~TGsGKTl~~~l~il~~l~ 95 (375)
.+|+|..+|.+.. .+..+++.|++-|+.+|+|+|.+.+ |-..+|+|.|-.|-||||||++|.+|++....
T Consensus 164 ~ipPPIksF~eMK------FP~~~L~~lk~KGI~~PTpIQvQGl----PvvLsGRDmIGIAfTGSGKTlvFvLP~imf~L 233 (610)
T KOG0341|consen 164 DIPPPIKSFKEMK------FPKPLLRGLKKKGIVHPTPIQVQGL----PVVLSGRDMIGIAFTGSGKTLVFVLPVIMFAL 233 (610)
T ss_pred CCCCchhhhhhcc------CCHHHHHHHHhcCCCCCCceeecCc----ceEeecCceeeEEeecCCceEEEeHHHHHHHH
Confidence 3577888888888 9999999999999999999999975 45558999999999999999999999987765
Q ss_pred hc-------ccCCceEEEEcccHHHHHHHHHHHHHhcccc------CceEEEeecCCchHHHHHHHhhcCccccCccCCc
Q 017196 96 NR-------AVRCLRALVVLPTRDLALQVKDVFAAIAPAV------GLSVGLAVGQSSIADEISELIKRPKLEAGICYDP 162 (375)
Q Consensus 96 ~~-------~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~------~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (375)
.. ...+|..|||||+|+||.|++..+..+.... .++..+..||-....+
T Consensus 234 eqE~~lPf~~~EGP~gLiicPSRELArQt~~iie~~~~~L~e~g~P~lRs~LciGG~~v~eq------------------ 295 (610)
T KOG0341|consen 234 EQEMMLPFARGEGPYGLIICPSRELARQTHDIIEQYVAALQEAGYPELRSLLCIGGVPVREQ------------------ 295 (610)
T ss_pred HHHhcCccccCCCCeeEEEcCcHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhhcCccHHHH------------------
Confidence 43 2457889999999999999999988876543 3567777787766555
Q ss_pred hhHHHhhcCCCcEEEeCcHHHHHHHhhcCCCCCCCccEEEEecchhhhhHhHHhHHHHHHHhhhcccccccccccccccc
Q 017196 163 EDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPS 242 (375)
Q Consensus 163 ~~~~~~~~~~~~IiV~Tp~~l~~~l~~~~~~~~~~~~~vIiDE~h~l~~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~ 242 (375)
.+.+.++.+|+|+||++|.+++.. +.+.+.-+.++.+||||+|++-+|...+..+..+++.
T Consensus 296 ---l~~v~~GvHivVATPGRL~DmL~K-K~~sLd~CRyL~lDEADRmiDmGFEddir~iF~~FK~--------------- 356 (610)
T KOG0341|consen 296 ---LDVVRRGVHIVVATPGRLMDMLAK-KIMSLDACRYLTLDEADRMIDMGFEDDIRTIFSFFKG--------------- 356 (610)
T ss_pred ---HHHHhcCeeEEEcCcchHHHHHHH-hhccHHHHHHhhhhhHHHHhhccchhhHHHHHHHHhh---------------
Confidence 446788999999999999999988 6688888999999999999999999999999999988
Q ss_pred cccccccccccccccCCCCCCCCceeEEEEEEecCCCchhhhccccCCCeEEecCCccccCcccceeEEEeccCCCcHHH
Q 017196 243 AFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLY 322 (375)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~k~~~ 322 (375)
..|.++||||+|..+..+++..+..|+.++++......- ++.+.+.++..+.|...
T Consensus 357 -----------------------QRQTLLFSATMP~KIQ~FAkSALVKPvtvNVGRAGAAsl-dViQevEyVkqEaKiVy 412 (610)
T KOG0341|consen 357 -----------------------QRQTLLFSATMPKKIQNFAKSALVKPVTVNVGRAGAASL-DVIQEVEYVKQEAKIVY 412 (610)
T ss_pred -----------------------hhheeeeeccccHHHHHHHHhhcccceEEecccccccch-hHHHHHHHHHhhhhhhh
Confidence 557899999999999999999999999999998774432 33344445677788777
Q ss_pred HHHHHHhcCCCeEEEEcCChhhHHHHHHHHHHhcCCcceEEeccccccccccC
Q 017196 323 LVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRR 375 (375)
Q Consensus 323 l~~ll~~~~~~k~lIF~~s~~~a~~l~~~L~~~g~~~~~~~~lh~~~~~~~R~ 375 (375)
|.+.+....+ ++||||..+.+++.+++||-- .|++++.+|||-.+++|.
T Consensus 413 lLeCLQKT~P-pVLIFaEkK~DVD~IhEYLLl---KGVEavaIHGGKDQedR~ 461 (610)
T KOG0341|consen 413 LLECLQKTSP-PVLIFAEKKADVDDIHEYLLL---KGVEAVAIHGGKDQEDRH 461 (610)
T ss_pred HHHHhccCCC-ceEEEeccccChHHHHHHHHH---ccceeEEeecCcchhHHH
Confidence 7777766544 799999999999999999984 459999999999999884
No 30
>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.9e-36 Score=274.11 Aligned_cols=279 Identities=23% Similarity=0.351 Sum_probs=247.1
Q ss_pred cCccccCCCCCCCCCCHHHHHHHHhCCCCCccHhhHHHHHHhhCCCCCCCCEEEECCCCCchHHHhHHHHHHHhhhcccC
Q 017196 21 VSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVR 100 (375)
Q Consensus 21 ~~~~~~~~~~~~~~l~~~i~~~l~~~g~~~~~~~Q~~~~~~~~~~~~~~~~~ii~a~TGsGKTl~~~l~il~~l~~~~~~ 100 (375)
+.+|++.. |++.+++.+...||++|+.+|++|+ .++..|.|+.+.+++|+|||.+|.+++++.+... .+
T Consensus 25 vdsfddm~------L~e~LLrgiy~yGFekPSaIQqraI----~p~i~G~dv~~qaqsgTgKt~af~i~iLq~iD~~-~k 93 (397)
T KOG0327|consen 25 VDSFDDMN------LKESLLRGIYAYGFEKPSAIQQRAI----LPCIKGHDVIAQAQSGTGKTAAFLISILQQIDMS-VK 93 (397)
T ss_pred hhhhhhcC------CCHHHHhHHHhhccCCchHHHhccc----cccccCCceeEeeeccccchhhhHHHHHhhcCcc-hH
Confidence 44788888 9999999999999999999999984 4555899999999999999999999999998654 34
Q ss_pred CceEEEEcccHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcCCCcEEEeCc
Q 017196 101 CLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATP 180 (375)
Q Consensus 101 ~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiV~Tp 180 (375)
..+|++++||++|+.|+....+.++...+.++..+.|+.....+... .....++|+||||
T Consensus 94 e~qalilaPtreLa~qi~~v~~~lg~~~~~~v~~~igg~~~~~~~~~--------------------i~~~~~hivvGTp 153 (397)
T KOG0327|consen 94 ETQALILAPTRELAQQIQKVVRALGDHMDVSVHACIGGTNVRREDQA--------------------LLKDKPHIVVGTP 153 (397)
T ss_pred HHHHHHhcchHHHHHHHHHHHHhhhcccceeeeeecCcccchhhhhh--------------------hhccCceeecCCc
Confidence 56899999999999999999999999999999999998876544221 2334579999999
Q ss_pred HHHHHHHhhcCCCCCCCccEEEEecchhhhhHhHHhHHHHHHHhhhcccccccccccccccccccccccccccccccCCC
Q 017196 181 GRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFK 260 (375)
Q Consensus 181 ~~l~~~l~~~~~~~~~~~~~vIiDE~h~l~~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (375)
+++.+.++. ..+..+.++++|+||+|.++..+|.+.+..+.++++.
T Consensus 154 grV~dml~~-~~l~~~~iKmfvlDEaDEmLs~gfkdqI~~if~~lp~--------------------------------- 199 (397)
T KOG0327|consen 154 GRVFDMLNR-GSLSTDGIKMFVLDEADEMLSRGFKDQIYDIFQELPS--------------------------------- 199 (397)
T ss_pred hhHHHhhcc-ccccccceeEEeecchHhhhccchHHHHHHHHHHcCc---------------------------------
Confidence 999999998 4677888999999999999999999999999999988
Q ss_pred CCCCCceeEEEEEEecCCCchhhhccccCCCeEEecCCccccCcccceeEEEeccCCCcHHHHHHHHHhcCCCeEEEEcC
Q 017196 261 DKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTS 340 (375)
Q Consensus 261 ~~~~~~~q~i~~SATl~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~k~lIF~~ 340 (375)
+.|++++|||+|.++....+.++.+|..+.+...... -..+++++..+..+.|...|..+.+ ...+.+||||
T Consensus 200 -----~vQv~l~SAT~p~~vl~vt~~f~~~pv~i~vkk~~lt-l~gikq~~i~v~k~~k~~~l~dl~~--~~~q~~if~n 271 (397)
T KOG0327|consen 200 -----DVQVVLLSATMPSDVLEVTKKFMREPVRILVKKDELT-LEGIKQFYINVEKEEKLDTLCDLYR--RVTQAVIFCN 271 (397)
T ss_pred -----chhheeecccCcHHHHHHHHHhccCceEEEecchhhh-hhheeeeeeeccccccccHHHHHHH--hhhcceEEec
Confidence 7899999999999999999999999999988876633 4678899999988889999999999 5568999999
Q ss_pred ChhhHHHHHHHHHHhcCCcceEEeccccccccccC
Q 017196 341 SVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRR 375 (375)
Q Consensus 341 s~~~a~~l~~~L~~~g~~~~~~~~lh~~~~~~~R~ 375 (375)
+++.+..+...|. .+++.+.++||+|.+.+|+
T Consensus 272 t~r~v~~l~~~L~---~~~~~~s~~~~d~~q~~R~ 303 (397)
T KOG0327|consen 272 TRRKVDNLTDKLR---AHGFTVSAIHGDMEQNERD 303 (397)
T ss_pred chhhHHHHHHHHh---hCCceEEEeecccchhhhh
Confidence 9999999999997 4559999999999999985
No 31
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.1e-36 Score=273.89 Aligned_cols=281 Identities=20% Similarity=0.267 Sum_probs=243.3
Q ss_pred ccCccccCCCCCCCCCCHHHHHHHHhCCCCCccHhhHHHHHHhhCCCCCCCCEEEECCCCCchHHHhHHHHHHHhhhccc
Q 017196 20 DVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAV 99 (375)
Q Consensus 20 ~~~~~~~~~~~~~~~l~~~i~~~l~~~g~~~~~~~Q~~~~~~~~~~~~~~~~~ii~a~TGsGKTl~~~l~il~~l~~~~~ 99 (375)
.+++|+++. |.|+++..+..++|+.|+.+|..|+|-++. .-.+|+|-++..|||||.||.+.++.++.-. .
T Consensus 88 S~ksFeeL~------LkPellkgly~M~F~kPskIQe~aLPlll~--~Pp~nlIaQsqsGtGKTaaFvL~MLsrvd~~-~ 158 (477)
T KOG0332|consen 88 SAKSFEELR------LKPELLKGLYAMKFQKPSKIQETALPLLLA--EPPQNLIAQSQSGTGKTAAFVLTMLSRVDPD-V 158 (477)
T ss_pred ccccHHhhC------CCHHHHhHHHHhccCCcchHHHhhcchhhc--CCchhhhhhhcCCCchhHHHHHHHHHhcCcc-c
Confidence 456899999 999999999999999999999999887663 2458999999999999999999999999776 4
Q ss_pred CCceEEEEcccHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcCCCcEEEeC
Q 017196 100 RCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVAT 179 (375)
Q Consensus 100 ~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiV~T 179 (375)
..|+++.|+||++||.|+.+.+.+++...++.+..+.-++..... ..=..+|++||
T Consensus 159 ~~PQ~iCLaPtrELA~Q~~eVv~eMGKf~~ita~yair~sk~~rG------------------------~~i~eqIviGT 214 (477)
T KOG0332|consen 159 VVPQCICLAPTRELAPQTGEVVEEMGKFTELTASYAIRGSKAKRG------------------------NKLTEQIVIGT 214 (477)
T ss_pred cCCCceeeCchHHHHHHHHHHHHHhcCceeeeEEEEecCcccccC------------------------CcchhheeeCC
Confidence 667899999999999999999999999988888877766521110 01124899999
Q ss_pred cHHHHHHHhhcCCCCCCCccEEEEecchhhhhH-hHHhHHHHHHHhhhcccccccccccccccccccccccccccccccC
Q 017196 180 PGRLMDHINATRGFTLEHLCYLVVDETDRLLRE-AYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERG 258 (375)
Q Consensus 180 p~~l~~~l~~~~~~~~~~~~~vIiDE~h~l~~~-~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (375)
|+.+.+++...+-+++..++++|+||||.+++. +|+..-..|...++.
T Consensus 215 PGtv~Dlm~klk~id~~kikvfVlDEAD~Mi~tqG~~D~S~rI~~~lP~------------------------------- 263 (477)
T KOG0332|consen 215 PGTVLDLMLKLKCIDLEKIKVFVLDEADVMIDTQGFQDQSIRIMRSLPR------------------------------- 263 (477)
T ss_pred CccHHHHHHHHHhhChhhceEEEecchhhhhhcccccccchhhhhhcCC-------------------------------
Confidence 999999998877788999999999999999887 788888888888875
Q ss_pred CCCCCCCceeEEEEEEecCCCchhhhccccCCCeEEecCCccccCcccceeEEEecc-CCCcHHHHHHHHHhcCCCeEEE
Q 017196 259 FKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICE-SKLKPLYLVALLQSLGEEKCIV 337 (375)
Q Consensus 259 ~~~~~~~~~q~i~~SATl~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~~~~~~-~~~k~~~l~~ll~~~~~~k~lI 337 (375)
+.|.++||||..+.+..++...+.++..+.+......+ .+++++++.|. .++|++.|.++.-...-++.||
T Consensus 264 -------~~QllLFSATf~e~V~~Fa~kivpn~n~i~Lk~eel~L-~~IkQlyv~C~~~~~K~~~l~~lyg~~tigqsiI 335 (477)
T KOG0332|consen 264 -------NQQLLLFSATFVEKVAAFALKIVPNANVIILKREELAL-DNIKQLYVLCACRDDKYQALVNLYGLLTIGQSII 335 (477)
T ss_pred -------cceEEeeechhHHHHHHHHHHhcCCCceeeeehhhccc-cchhhheeeccchhhHHHHHHHHHhhhhhhheEE
Confidence 78999999999999999999999988888877776554 57888888886 5689999999888778889999
Q ss_pred EcCChhhHHHHHHHHHHhcCCcceEEeccccccccccC
Q 017196 338 FTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRR 375 (375)
Q Consensus 338 F~~s~~~a~~l~~~L~~~g~~~~~~~~lh~~~~~~~R~ 375 (375)
||.|+++|..++..|.+.| +.|.++||+|...+|+
T Consensus 336 Fc~tk~ta~~l~~~m~~~G---h~V~~l~G~l~~~~R~ 370 (477)
T KOG0332|consen 336 FCHTKATAMWLYEEMRAEG---HQVSLLHGDLTVEQRA 370 (477)
T ss_pred EEeehhhHHHHHHHHHhcC---ceeEEeeccchhHHHH
Confidence 9999999999999999554 9999999999999984
No 32
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.6e-36 Score=275.57 Aligned_cols=289 Identities=25% Similarity=0.348 Sum_probs=246.6
Q ss_pred CcCCCCccCccccCCCCCCCCCCHHHHHHHHhCCCCCccHhhHHHHHHhhCCCCCCCCEEEECCCCCchHHHhHHHHHHH
Q 017196 14 WMRSPVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQT 93 (375)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~l~~~i~~~l~~~g~~~~~~~Q~~~~~~~~~~~~~~~~~ii~a~TGsGKTl~~~l~il~~ 93 (375)
...+|.|+-.|++.= ...+++.+.+.+.||.+|+|+|++|||-++ .|+|++..|.||+|||++|++|.+..
T Consensus 211 krpIPnP~ctFddAF-----q~~pevmenIkK~GFqKPtPIqSQaWPI~L----QG~DliGVAQTgtgKtL~~L~pg~ih 281 (629)
T KOG0336|consen 211 KRPIPNPVCTFDDAF-----QCYPEVMENIKKTGFQKPTPIQSQAWPILL----QGIDLIGVAQTGTGKTLAFLLPGFIH 281 (629)
T ss_pred cccCCCCcCcHHHHH-----hhhHHHHHHHHhccCCCCCcchhcccceee----cCcceEEEEecCCCcCHHHhccceee
Confidence 345677777775432 278899999999999999999999998766 79999999999999999999998766
Q ss_pred hhh-----cccCCceEEEEcccHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHh
Q 017196 94 LSN-----RAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQE 168 (375)
Q Consensus 94 l~~-----~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (375)
+.. +...++.+|+++||++|+.|+.-....+.-. |....+++|+.+-..+. +.
T Consensus 282 i~aqp~~~~qr~~p~~lvl~ptreLalqie~e~~kysyn-g~ksvc~ygggnR~eqi---------------------e~ 339 (629)
T KOG0336|consen 282 IDAQPKRREQRNGPGVLVLTPTRELALQIEGEVKKYSYN-GLKSVCVYGGGNRNEQI---------------------ED 339 (629)
T ss_pred eeccchhhhccCCCceEEEeccHHHHHHHHhHHhHhhhc-CcceEEEecCCCchhHH---------------------HH
Confidence 643 2346778999999999999999988877543 78888888887655443 47
Q ss_pred hcCCCcEEEeCcHHHHHHHhhcCCCCCCCccEEEEecchhhhhHhHHhHHHHHHHhhhcccccccccccccccccccccc
Q 017196 169 LQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLK 248 (375)
Q Consensus 169 ~~~~~~IiV~Tp~~l~~~l~~~~~~~~~~~~~vIiDE~h~l~~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~ 248 (375)
+.++.+|+++||++|.++... ..++++.+.++|+||||.|++.+|...+..|+-.+++
T Consensus 340 lkrgveiiiatPgrlndL~~~-n~i~l~siTYlVlDEADrMLDMgFEpqIrkilldiRP--------------------- 397 (629)
T KOG0336|consen 340 LKRGVEIIIATPGRLNDLQMD-NVINLASITYLVLDEADRMLDMGFEPQIRKILLDIRP--------------------- 397 (629)
T ss_pred HhcCceEEeeCCchHhhhhhc-CeeeeeeeEEEEecchhhhhcccccHHHHHHhhhcCC---------------------
Confidence 788999999999999998877 5688999999999999999999999999999988877
Q ss_pred cccccccccCCCCCCCCceeEEEEEEecCCCchhhhccccCCCeEEecCCccccCcccceeEEEeccCCCcHHHHHHHHH
Q 017196 249 TIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQ 328 (375)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~ 328 (375)
..|.++.|||+|+.+..++..++.+|..+.++..+..--.++++..+...+.+|...+..++.
T Consensus 398 -----------------DRqtvmTSATWP~~VrrLa~sY~Kep~~v~vGsLdL~a~~sVkQ~i~v~~d~~k~~~~~~f~~ 460 (629)
T KOG0336|consen 398 -----------------DRQTVMTSATWPEGVRRLAQSYLKEPMIVYVGSLDLVAVKSVKQNIIVTTDSEKLEIVQFFVA 460 (629)
T ss_pred -----------------cceeeeecccCchHHHHHHHHhhhCceEEEecccceeeeeeeeeeEEecccHHHHHHHHHHHH
Confidence 678999999999999999999999999999887765555677888877778888888888888
Q ss_pred hc-CCCeEEEEcCChhhHHHHHHHHHHhcCCcceEEeccccccccccC
Q 017196 329 SL-GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRR 375 (375)
Q Consensus 329 ~~-~~~k~lIF~~s~~~a~~l~~~L~~~g~~~~~~~~lh~~~~~~~R~ 375 (375)
.. +..|+||||.++..|+.|...|. -.|+.+..+||+-.+.+|.
T Consensus 461 ~ms~ndKvIiFv~~K~~AD~LSSd~~---l~gi~~q~lHG~r~Q~DrE 505 (629)
T KOG0336|consen 461 NMSSNDKVIIFVSRKVMADHLSSDFC---LKGISSQSLHGNREQSDRE 505 (629)
T ss_pred hcCCCceEEEEEechhhhhhccchhh---hcccchhhccCChhhhhHH
Confidence 76 46799999999999999999888 4459999999999988873
No 33
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=100.00 E-value=1.5e-34 Score=296.75 Aligned_cols=274 Identities=19% Similarity=0.237 Sum_probs=199.4
Q ss_pred CCHHHHHHHHhCCCCCccHhhHHHHHHhhCCCCCCCCEEEECCCCCchHHHhHHHHHHHhhhcccCCceEEEEcccHHHH
Q 017196 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLA 114 (375)
Q Consensus 35 l~~~i~~~l~~~g~~~~~~~Q~~~~~~~~~~~~~~~~~ii~a~TGsGKTl~~~l~il~~l~~~~~~~~~~lil~Pt~~L~ 114 (375)
+++.+.++|.+.||..|+++|.+|++.++ .|+|+++++|||||||+||++|+++.+.+. ++.++|||+||++|+
T Consensus 21 l~~~l~~~L~~~g~~~p~~~Q~~ai~~il----~G~nvvv~apTGSGKTla~~LPiL~~l~~~--~~~~aL~l~PtraLa 94 (742)
T TIGR03817 21 AHPDVVAALEAAGIHRPWQHQARAAELAH----AGRHVVVATGTASGKSLAYQLPVLSALADD--PRATALYLAPTKALA 94 (742)
T ss_pred CCHHHHHHHHHcCCCcCCHHHHHHHHHHH----CCCCEEEECCCCCcHHHHHHHHHHHHHhhC--CCcEEEEEcChHHHH
Confidence 89999999999999999999999988776 799999999999999999999999999764 456899999999999
Q ss_pred HHHHHHHHHhccccCceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcCCCcEEEeCcHHHHHHHhhcCC--
Q 017196 115 LQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRG-- 192 (375)
Q Consensus 115 ~Q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiV~Tp~~l~~~l~~~~~-- 192 (375)
+|+++.++++. ..++++..+.|+...... +.+..+++|+|+||+.+...+.....
T Consensus 95 ~q~~~~l~~l~-~~~i~v~~~~Gdt~~~~r----------------------~~i~~~~~IivtTPd~L~~~~L~~~~~~ 151 (742)
T TIGR03817 95 ADQLRAVRELT-LRGVRPATYDGDTPTEER----------------------RWAREHARYVLTNPDMLHRGILPSHARW 151 (742)
T ss_pred HHHHHHHHHhc-cCCeEEEEEeCCCCHHHH----------------------HHHhcCCCEEEEChHHHHHhhccchhHH
Confidence 99999999987 347888888887653322 24456689999999998754322110
Q ss_pred -CCCCCccEEEEecchhhhhHhHHhHHHHHHHhhhcccccccccccccccccccccccccccccccCCCCCCCCceeEEE
Q 017196 193 -FTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMV 271 (375)
Q Consensus 193 -~~~~~~~~vIiDE~h~l~~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~ 271 (375)
..++++++|||||||.+.. .|...+..++..++..... ...+.|+++
T Consensus 152 ~~~l~~l~~vViDEah~~~g-~fg~~~~~il~rL~ri~~~-------------------------------~g~~~q~i~ 199 (742)
T TIGR03817 152 ARFLRRLRYVVIDECHSYRG-VFGSHVALVLRRLRRLCAR-------------------------------YGASPVFVL 199 (742)
T ss_pred HHHHhcCCEEEEeChhhccC-ccHHHHHHHHHHHHHHHHh-------------------------------cCCCCEEEE
Confidence 1278899999999999854 4666666666555432110 011579999
Q ss_pred EEEecCCCchhhhccccCCCeEEecCCccccCcccceeEEEeccC-----------------CCcHHHHHHHHHhcCCCe
Q 017196 272 LSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICES-----------------KLKPLYLVALLQSLGEEK 334 (375)
Q Consensus 272 ~SATl~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~~~~~~~-----------------~~k~~~l~~ll~~~~~~k 334 (375)
+|||+++. .++...++..+..+...... +....+.....+. ..+...+..+++. +.+
T Consensus 200 ~SATi~n~-~~~~~~l~g~~~~~i~~~~~---~~~~~~~~~~~p~~~~~~~~~~~~~r~~~~~~~~~~l~~l~~~--~~~ 273 (742)
T TIGR03817 200 ASATTADP-AAAASRLIGAPVVAVTEDGS---PRGARTVALWEPPLTELTGENGAPVRRSASAEAADLLADLVAE--GAR 273 (742)
T ss_pred EecCCCCH-HHHHHHHcCCCeEEECCCCC---CcCceEEEEecCCccccccccccccccchHHHHHHHHHHHHHC--CCC
Confidence 99999865 44565666666544322111 1222222222111 1234455556553 569
Q ss_pred EEEEcCChhhHHHHHHHHHHhc-----CCcceEEeccccccccccC
Q 017196 335 CIVFTSSVESTHRLCTLLNHFG-----ELRIKIKEYSGLQRQSVRR 375 (375)
Q Consensus 335 ~lIF~~s~~~a~~l~~~L~~~g-----~~~~~~~~lh~~~~~~~R~ 375 (375)
+||||+|+++|+.++..|+... ..+..+..+||+|++++|+
T Consensus 274 ~IVF~~sr~~ae~l~~~l~~~l~~~~~~l~~~v~~~hgg~~~~eR~ 319 (742)
T TIGR03817 274 TLTFVRSRRGAELVAAIARRLLGEVDPDLAERVAAYRAGYLPEDRR 319 (742)
T ss_pred EEEEcCCHHHHHHHHHHHHHHHHhhccccccchhheecCCCHHHHH
Confidence 9999999999999999987531 1246789999999999984
No 34
>KOG4284 consensus DEAD box protein [Transcription]
Probab=100.00 E-value=7.2e-36 Score=284.29 Aligned_cols=281 Identities=22% Similarity=0.347 Sum_probs=243.9
Q ss_pred CCccCccccCCCCCCCCCCHHHHHHHHhCCCCCccHhhHHHHHHhhCCCCCCCCEEEECCCCCchHHHhHHHHHHHhhhc
Q 017196 18 PVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNR 97 (375)
Q Consensus 18 ~~~~~~~~~~~~~~~~~l~~~i~~~l~~~g~~~~~~~Q~~~~~~~~~~~~~~~~~ii~a~TGsGKTl~~~l~il~~l~~~ 97 (375)
|.....|+.+- |-..++..|...+|..|+++|..|+|-++ .+.|+||+|..|+|||++|.+.+++.+...
T Consensus 21 ~~~~~~fe~l~------l~r~vl~glrrn~f~~ptkiQaaAIP~~~----~kmDliVQaKSGTGKTlVfsv~av~sl~~~ 90 (980)
T KOG4284|consen 21 SNCTPGFEQLA------LWREVLLGLRRNAFALPTKIQAAAIPAIF----SKMDLIVQAKSGTGKTLVFSVLAVESLDSR 90 (980)
T ss_pred cCCCCCHHHHH------HHHHHHHHHHhhcccCCCchhhhhhhhhh----cccceEEEecCCCCceEEEEeeeehhcCcc
Confidence 44455677777 88999999999999999999999966554 789999999999999999998888888665
Q ss_pred ccCCceEEEEcccHHHHHHHHHHHHHhcccc-CceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcCCCcEE
Q 017196 98 AVRCLRALVVLPTRDLALQVKDVFAAIAPAV-GLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDIL 176 (375)
Q Consensus 98 ~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ii 176 (375)
. ..++++|++|||+++.|+...+..+++.+ |+++..+.||+.......++ ..++|+
T Consensus 91 ~-~~~q~~Iv~PTREiaVQI~~tv~~v~~sf~g~~csvfIGGT~~~~d~~rl----------------------k~~rIv 147 (980)
T KOG4284|consen 91 S-SHIQKVIVTPTREIAVQIKETVRKVAPSFTGARCSVFIGGTAHKLDLIRL----------------------KQTRIV 147 (980)
T ss_pred c-CcceeEEEecchhhhhHHHHHHHHhcccccCcceEEEecCchhhhhhhhh----------------------hhceEE
Confidence 3 55689999999999999999999999865 89999999998776554322 346899
Q ss_pred EeCcHHHHHHHhhcCCCCCCCccEEEEecchhhhh-HhHHhHHHHHHHhhhccccccccccccccccccccccccccccc
Q 017196 177 VATPGRLMDHINATRGFTLEHLCYLVVDETDRLLR-EAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGV 255 (375)
Q Consensus 177 V~Tp~~l~~~l~~~~~~~~~~~~~vIiDE~h~l~~-~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (375)
||||+++.+++.. +.+++++++++|+||||.+++ ..|+..+..|++.+|.
T Consensus 148 IGtPGRi~qL~el-~~~n~s~vrlfVLDEADkL~~t~sfq~~In~ii~slP~---------------------------- 198 (980)
T KOG4284|consen 148 IGTPGRIAQLVEL-GAMNMSHVRLFVLDEADKLMDTESFQDDINIIINSLPQ---------------------------- 198 (980)
T ss_pred ecCchHHHHHHHh-cCCCccceeEEEeccHHhhhchhhHHHHHHHHHHhcch----------------------------
Confidence 9999999999988 789999999999999999998 5899999999999988
Q ss_pred ccCCCCCCCCceeEEEEEEecCCCchhhhccccCCCeEEecCCccccCcccceeEEEeccCC--------CcHHHHHHHH
Q 017196 256 ERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESK--------LKPLYLVALL 327 (375)
Q Consensus 256 ~~~~~~~~~~~~q~i~~SATl~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~--------~k~~~l~~ll 327 (375)
+.|++.||||.|..+.++..+++++|..+........+ -.++++++..... .|.+.|.+++
T Consensus 199 ----------~rQv~a~SATYp~nLdn~Lsk~mrdp~lVr~n~~d~~L-~GikQyv~~~~s~nnsveemrlklq~L~~vf 267 (980)
T KOG4284|consen 199 ----------IRQVAAFSATYPRNLDNLLSKFMRDPALVRFNADDVQL-FGIKQYVVAKCSPNNSVEEMRLKLQKLTHVF 267 (980)
T ss_pred ----------hheeeEEeccCchhHHHHHHHHhcccceeecccCCcee-echhheeeeccCCcchHHHHHHHHHHHHHHH
Confidence 77899999999999999999999999999887776443 3566766555433 3778888999
Q ss_pred HhcCCCeEEEEcCChhhHHHHHHHHHHhcCCcceEEecccccccccc
Q 017196 328 QSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVR 374 (375)
Q Consensus 328 ~~~~~~k~lIF~~s~~~a~~l~~~L~~~g~~~~~~~~lh~~~~~~~R 374 (375)
++.+-.++||||+....|+-++.+|.. .|+.|.+++|.|++.+|
T Consensus 268 ~~ipy~QAlVF~~~~sra~~~a~~L~s---sG~d~~~ISgaM~Q~~R 311 (980)
T KOG4284|consen 268 KSIPYVQALVFCDQISRAEPIATHLKS---SGLDVTFISGAMSQKDR 311 (980)
T ss_pred hhCchHHHHhhhhhhhhhhHHHHHhhc---cCCCeEEeccccchhHH
Confidence 999988999999999999999999995 55999999999999998
No 35
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=4.8e-35 Score=266.86 Aligned_cols=281 Identities=28% Similarity=0.381 Sum_probs=248.7
Q ss_pred cCccccCCCCCCCCCCHHHHHHHHhCCCCCccHhhHHHHHHhhCCCCCCCCEEEECCCCCchHHHhHHHHHHHhhhcccC
Q 017196 21 VSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVR 100 (375)
Q Consensus 21 ~~~~~~~~~~~~~~l~~~i~~~l~~~g~~~~~~~Q~~~~~~~~~~~~~~~~~ii~a~TGsGKTl~~~l~il~~l~~~~~~ 100 (375)
.-.|..++ |+..+.+++.+-||..|+|+|+.++ |.+.++++++-.|-||+|||.||++|+++.+......
T Consensus 20 ~g~fqsmg------L~~~v~raI~kkg~~~ptpiqRKTi----pliLe~~dvv~martgsgktaaf~ipm~e~Lk~~s~~ 89 (529)
T KOG0337|consen 20 SGGFQSMG------LDYKVLRAIHKKGFNTPTPIQRKTI----PLILEGRDVVGMARTGSGKTAAFLIPMIEKLKSHSQT 89 (529)
T ss_pred CCCccccC------CCHHHHHHHHHhhcCCCCchhcccc----cceeeccccceeeecCCcchhhHHHHHHHHHhhcccc
Confidence 45788888 9999999999999999999999985 4555899999999999999999999999999887667
Q ss_pred CceEEEEcccHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcCCCcEEEeCc
Q 017196 101 CLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATP 180 (375)
Q Consensus 101 ~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiV~Tp 180 (375)
+.|++|+.||++|+.|+.+..++++...+++..+++|+.+..++.. .+..++|||++||
T Consensus 90 g~RalilsptreLa~qtlkvvkdlgrgt~lr~s~~~ggD~~eeqf~---------------------~l~~npDii~ATp 148 (529)
T KOG0337|consen 90 GLRALILSPTRELALQTLKVVKDLGRGTKLRQSLLVGGDSIEEQFI---------------------LLNENPDIIIATP 148 (529)
T ss_pred ccceeeccCcHHHHHHHHHHHHHhccccchhhhhhcccchHHHHHH---------------------HhccCCCEEEecC
Confidence 7899999999999999999999999999999999999988766654 6677889999999
Q ss_pred HHHHHHHhhcCCCCCCCccEEEEecchhhhhHhHHhHHHHHHHhhhcccccccccccccccccccccccccccccccCCC
Q 017196 181 GRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFK 260 (375)
Q Consensus 181 ~~l~~~l~~~~~~~~~~~~~vIiDE~h~l~~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (375)
+++..+.-. -.+.++.+.+||+||+|.++..+|++.+..++..++.
T Consensus 149 gr~~h~~ve-m~l~l~sveyVVfdEadrlfemgfqeql~e~l~rl~~--------------------------------- 194 (529)
T KOG0337|consen 149 GRLLHLGVE-MTLTLSSVEYVVFDEADRLFEMGFQEQLHEILSRLPE--------------------------------- 194 (529)
T ss_pred ceeeeeehh-eeccccceeeeeehhhhHHHhhhhHHHHHHHHHhCCC---------------------------------
Confidence 999877655 4478999999999999999999999999999999887
Q ss_pred CCCCCceeEEEEEEecCCCchhhhccccCCCeEEecCCccccCcccceeEEEeccCCCcHHHHHHHHHhc-CCCeEEEEc
Q 017196 261 DKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSL-GEEKCIVFT 339 (375)
Q Consensus 261 ~~~~~~~q~i~~SATl~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~-~~~k~lIF~ 339 (375)
..|.++||||+|..+..+.+.++.+|..+.++-+. .+...++..+..+...+|...|..++... ..+++++||
T Consensus 195 -----~~QTllfSatlp~~lv~fakaGl~~p~lVRldvet-kise~lk~~f~~~~~a~K~aaLl~il~~~~~~~~t~vf~ 268 (529)
T KOG0337|consen 195 -----SRQTLLFSATLPRDLVDFAKAGLVPPVLVRLDVET-KISELLKVRFFRVRKAEKEAALLSILGGRIKDKQTIVFV 268 (529)
T ss_pred -----cceEEEEeccCchhhHHHHHccCCCCceEEeehhh-hcchhhhhheeeeccHHHHHHHHHHHhccccccceeEEe
Confidence 56899999999999999999999999998866544 46677888999999999999999999875 356899999
Q ss_pred CChhhHHHHHHHHHHhcCCcceEEeccccccccccC
Q 017196 340 SSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRR 375 (375)
Q Consensus 340 ~s~~~a~~l~~~L~~~g~~~~~~~~lh~~~~~~~R~ 375 (375)
.|..+++.+...|...| +.+..+-|.|.+.-|+
T Consensus 269 ~tk~hve~~~~ll~~~g---~~~s~iysslD~~aRk 301 (529)
T KOG0337|consen 269 ATKHHVEYVRGLLRDFG---GEGSDIYSSLDQEARK 301 (529)
T ss_pred cccchHHHHHHHHHhcC---CCccccccccChHhhh
Confidence 99999999999999554 8888888888877663
No 36
>PRK02362 ski2-like helicase; Provisional
Probab=100.00 E-value=1.8e-32 Score=283.77 Aligned_cols=274 Identities=22% Similarity=0.236 Sum_probs=195.1
Q ss_pred ccccCCCCCCCCCCHHHHHHHHhCCCCCccHhhHHHHHHhhCCCCCCCCEEEECCCCCchHHHhHHHHHHHhhhcccCCc
Q 017196 23 LFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCL 102 (375)
Q Consensus 23 ~~~~~~~~~~~~l~~~i~~~l~~~g~~~~~~~Q~~~~~~~~~~~~~~~~~ii~a~TGsGKTl~~~l~il~~l~~~~~~~~ 102 (375)
.|++++ |++.+.+.+.+.|+.+|+|+|.+|++..+. .|+|++++||||||||++|.++++..+.. +.
T Consensus 2 ~~~~l~------lp~~~~~~l~~~g~~~l~p~Q~~ai~~~~~---~g~nvlv~APTGSGKTlia~lail~~l~~----~~ 68 (737)
T PRK02362 2 KIAELP------LPEGVIEFYEAEGIEELYPPQAEAVEAGLL---DGKNLLAAIPTASGKTLIAELAMLKAIAR----GG 68 (737)
T ss_pred ChhhcC------CCHHHHHHHHhCCCCcCCHHHHHHHHHHHh---CCCcEEEECCCcchHHHHHHHHHHHHHhc----CC
Confidence 467777 999999999999999999999999887443 78999999999999999999999998853 34
Q ss_pred eEEEEcccHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcCCCcEEEeCcHH
Q 017196 103 RALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGR 182 (375)
Q Consensus 103 ~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiV~Tp~~ 182 (375)
+++|++|+++||.|+++.++++.. .++++..++|+...... ....++|+|+||++
T Consensus 69 kal~i~P~raLa~q~~~~~~~~~~-~g~~v~~~tGd~~~~~~------------------------~l~~~~IiV~Tpek 123 (737)
T PRK02362 69 KALYIVPLRALASEKFEEFERFEE-LGVRVGISTGDYDSRDE------------------------WLGDNDIIVATSEK 123 (737)
T ss_pred cEEEEeChHHHHHHHHHHHHHhhc-CCCEEEEEeCCcCcccc------------------------ccCCCCEEEECHHH
Confidence 799999999999999999998754 48899999887542211 12357999999999
Q ss_pred HHHHHhhcCCCCCCCccEEEEecchhhhhHhHHhHHHHHHHhhhcccccccccccccccccccccccccccccccCCCCC
Q 017196 183 LMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDK 262 (375)
Q Consensus 183 l~~~l~~~~~~~~~~~~~vIiDE~h~l~~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (375)
+..++++ ...++.++++||+||+|.+.+.+++..++.++..++....
T Consensus 124 ~~~llr~-~~~~l~~v~lvViDE~H~l~d~~rg~~le~il~rl~~~~~-------------------------------- 170 (737)
T PRK02362 124 VDSLLRN-GAPWLDDITCVVVDEVHLIDSANRGPTLEVTLAKLRRLNP-------------------------------- 170 (737)
T ss_pred HHHHHhc-ChhhhhhcCEEEEECccccCCCcchHHHHHHHHHHHhcCC--------------------------------
Confidence 9998886 4456889999999999999887778888888777654221
Q ss_pred CCCceeEEEEEEecCCCchhhhccccCC-------CeEEec--CC-ccccCcccceeEEEeccC-CCcHHHHHHHHHhcC
Q 017196 263 PYPRLVKMVLSATLTQDPNKLAQLDLHH-------PLFLTT--GE-TRYKLPERLESYKLICES-KLKPLYLVALLQSLG 331 (375)
Q Consensus 263 ~~~~~q~i~~SATl~~~~~~~~~~~~~~-------~~~i~~--~~-~~~~~~~~i~~~~~~~~~-~~k~~~l~~ll~~~~ 331 (375)
..|++++|||+++ ..++..+.-.. |+.+.. .. ....... ......... ......+.+.+. .
T Consensus 171 ---~~qii~lSATl~n-~~~la~wl~~~~~~~~~rpv~l~~~v~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~--~ 242 (737)
T PRK02362 171 ---DLQVVALSATIGN-ADELADWLDAELVDSEWRPIDLREGVFYGGAIHFDD--SQREVEVPSKDDTLNLVLDTLE--E 242 (737)
T ss_pred ---CCcEEEEcccCCC-HHHHHHHhCCCcccCCCCCCCCeeeEecCCeecccc--ccccCCCccchHHHHHHHHHHH--c
Confidence 5689999999975 33333221111 111100 00 0000000 001011111 112223333332 4
Q ss_pred CCeEEEEcCChhhHHHHHHHHHHhcCC---------------------------------cceEEeccccccccccC
Q 017196 332 EEKCIVFTSSVESTHRLCTLLNHFGEL---------------------------------RIKIKEYSGLQRQSVRR 375 (375)
Q Consensus 332 ~~k~lIF~~s~~~a~~l~~~L~~~g~~---------------------------------~~~~~~lh~~~~~~~R~ 375 (375)
++++||||+|+++|+.++..|...... ...+.++||+|++.+|+
T Consensus 243 ~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~l~~gva~hHagl~~~eR~ 319 (737)
T PRK02362 243 GGQCLVFVSSRRNAEGFAKRAASALKKTLTAAERAELAELAEEIREVSDTETSKDLADCVAKGAAFHHAGLSREHRE 319 (737)
T ss_pred CCCeEEEEeCHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhccCccccHHHHHHHHhCEEeecCCCCHHHHH
Confidence 678999999999999999988643210 12588999999999984
No 37
>PRK00254 ski2-like helicase; Provisional
Probab=100.00 E-value=1.4e-31 Score=276.45 Aligned_cols=272 Identities=22% Similarity=0.254 Sum_probs=195.0
Q ss_pred ccccCCCCCCCCCCHHHHHHHHhCCCCCccHhhHHHHHHhhCCCCCCCCEEEECCCCCchHHHhHHHHHHHhhhcccCCc
Q 017196 23 LFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCL 102 (375)
Q Consensus 23 ~~~~~~~~~~~~l~~~i~~~l~~~g~~~~~~~Q~~~~~~~~~~~~~~~~~ii~a~TGsGKTl~~~l~il~~l~~~~~~~~ 102 (375)
.|++++ +++.+.+.+++.|+..|+|+|.+|++..+ ..|+|+++++|||||||++|.+|+++.+... +.
T Consensus 2 ~~~~l~------l~~~~~~~l~~~g~~~l~~~Q~~ai~~~~---~~g~nvlv~apTGsGKT~~~~l~il~~l~~~---~~ 69 (720)
T PRK00254 2 KVDELR------VDERIKRVLKERGIEELYPPQAEALKSGV---LEGKNLVLAIPTASGKTLVAEIVMVNKLLRE---GG 69 (720)
T ss_pred cHHHcC------CCHHHHHHHHhCCCCCCCHHHHHHHHHHH---hCCCcEEEECCCCcHHHHHHHHHHHHHHHhc---CC
Confidence 456677 99999999999999999999999987643 2789999999999999999999999887653 34
Q ss_pred eEEEEcccHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcCCCcEEEeCcHH
Q 017196 103 RALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGR 182 (375)
Q Consensus 103 ~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiV~Tp~~ 182 (375)
++|||+|+++|+.|+++.++.+. ..++++..++|+...... ....++|+|+||++
T Consensus 70 ~~l~l~P~~aLa~q~~~~~~~~~-~~g~~v~~~~Gd~~~~~~------------------------~~~~~~IiV~Tpe~ 124 (720)
T PRK00254 70 KAVYLVPLKALAEEKYREFKDWE-KLGLRVAMTTGDYDSTDE------------------------WLGKYDIIIATAEK 124 (720)
T ss_pred eEEEEeChHHHHHHHHHHHHHHh-hcCCEEEEEeCCCCCchh------------------------hhccCCEEEEcHHH
Confidence 89999999999999999998864 458999999988643211 12457999999999
Q ss_pred HHHHHhhcCCCCCCCccEEEEecchhhhhHhHHhHHHHHHHhhhcccccccccccccccccccccccccccccccCCCCC
Q 017196 183 LMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDK 262 (375)
Q Consensus 183 l~~~l~~~~~~~~~~~~~vIiDE~h~l~~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (375)
+..++++ ...+++++++||+||+|.+.+..+...++.++..+..
T Consensus 125 ~~~ll~~-~~~~l~~l~lvViDE~H~l~~~~rg~~le~il~~l~~----------------------------------- 168 (720)
T PRK00254 125 FDSLLRH-GSSWIKDVKLVVADEIHLIGSYDRGATLEMILTHMLG----------------------------------- 168 (720)
T ss_pred HHHHHhC-CchhhhcCCEEEEcCcCccCCccchHHHHHHHHhcCc-----------------------------------
Confidence 9888876 4467899999999999999877777788888777644
Q ss_pred CCCceeEEEEEEecCCCchhhhccccCCCeEEecCCccccCccc-ceeEEEeccCC--Cc-----HHHHHHHHHhcCCCe
Q 017196 263 PYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPER-LESYKLICESK--LK-----PLYLVALLQSLGEEK 334 (375)
Q Consensus 263 ~~~~~q~i~~SATl~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-i~~~~~~~~~~--~k-----~~~l~~ll~~~~~~k 334 (375)
+.|++++|||+++ ...+..+ +.... +........+... ..+.+...... .+ ...+.+.+. .+++
T Consensus 169 ---~~qiI~lSATl~n-~~~la~w-l~~~~-~~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~--~~~~ 240 (720)
T PRK00254 169 ---RAQILGLSATVGN-AEELAEW-LNAEL-VVSDWRPVKLRKGVFYQGFLFWEDGKIERFPNSWESLVYDAVK--KGKG 240 (720)
T ss_pred ---CCcEEEEEccCCC-HHHHHHH-hCCcc-ccCCCCCCcceeeEecCCeeeccCcchhcchHHHHHHHHHHHH--hCCC
Confidence 5689999999975 4555443 22211 1111110001000 00111111111 11 123334443 3568
Q ss_pred EEEEcCChhhHHHHHHHHHHhc------------------------------CCcceEEeccccccccccC
Q 017196 335 CIVFTSSVESTHRLCTLLNHFG------------------------------ELRIKIKEYSGLQRQSVRR 375 (375)
Q Consensus 335 ~lIF~~s~~~a~~l~~~L~~~g------------------------------~~~~~~~~lh~~~~~~~R~ 375 (375)
+||||+|++.|+.++..|.... .....+.++||+|++++|+
T Consensus 241 vLVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~hHagl~~~eR~ 311 (720)
T PRK00254 241 ALVFVNTRRSAEKEALELAKKIKRFLTKPELRALKELADSLEENPTNEKLKKALRGGVAFHHAGLGRTERV 311 (720)
T ss_pred EEEEEcChHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCcHHHHHHHhhCEEEeCCCCCHHHHH
Confidence 9999999999999887774210 0112489999999999984
No 38
>PRK13767 ATP-dependent helicase; Provisional
Probab=99.98 E-value=4.1e-31 Score=276.49 Aligned_cols=277 Identities=21% Similarity=0.238 Sum_probs=188.3
Q ss_pred CCHHHHHHHHhCCCCCccHhhHHHHHHhhCCCCCCCCEEEECCCCCchHHHhHHHHHHHhhhcc-----cCCceEEEEcc
Q 017196 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRA-----VRCLRALVVLP 109 (375)
Q Consensus 35 l~~~i~~~l~~~g~~~~~~~Q~~~~~~~~~~~~~~~~~ii~a~TGsGKTl~~~l~il~~l~~~~-----~~~~~~lil~P 109 (375)
+++.+.+++.+ +|..|+|+|.+||+.++ .|+|++++||||||||++|++|+++.+.... .++.++|||+|
T Consensus 18 l~~~v~~~~~~-~~~~~tpiQ~~Ai~~il----~g~nvli~APTGSGKTlaa~Lpil~~l~~~~~~~~~~~~~~~LyIsP 92 (876)
T PRK13767 18 LRPYVREWFKE-KFGTFTPPQRYAIPLIH----EGKNVLISSPTGSGKTLAAFLAIIDELFRLGREGELEDKVYCLYVSP 92 (876)
T ss_pred cCHHHHHHHHH-ccCCCCHHHHHHHHHHH----cCCCEEEECCCCCcHHHHHHHHHHHHHHhhccccCCCCCeEEEEEcC
Confidence 88999999886 78899999999998876 6899999999999999999999999886532 23568999999
Q ss_pred cHHHHHHHHHHHHH-------hc----ccc-CceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcCCCcEEE
Q 017196 110 TRDLALQVKDVFAA-------IA----PAV-GLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILV 177 (375)
Q Consensus 110 t~~L~~Q~~~~~~~-------~~----~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiV 177 (375)
+++|+.|+++.+.. ++ ... ++++...+|+........ .+...++|+|
T Consensus 93 traLa~di~~~L~~~l~~i~~~~~~~g~~~~~i~v~v~~Gdt~~~~r~~---------------------~l~~~p~IlV 151 (876)
T PRK13767 93 LRALNNDIHRNLEEPLTEIREIAKERGEELPEIRVAIRTGDTSSYEKQK---------------------MLKKPPHILI 151 (876)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCeeEEEEcCCCCHHHHHH---------------------HHhCCCCEEE
Confidence 99999999886653 22 222 678888999876554432 3455789999
Q ss_pred eCcHHHHHHHhhcCCC--CCCCccEEEEecchhhhhHhHHhHHHHHHHhhhccccccccccccccccccccccccccccc
Q 017196 178 ATPGRLMDHINATRGF--TLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGV 255 (375)
Q Consensus 178 ~Tp~~l~~~l~~~~~~--~~~~~~~vIiDE~h~l~~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (375)
|||++|..++.+ ..+ .++.+++|||||+|.+.+..+...+...+..+......
T Consensus 152 tTPE~L~~ll~~-~~~~~~l~~l~~VVIDE~H~l~~~~RG~~l~~~L~rL~~l~~~------------------------ 206 (876)
T PRK13767 152 TTPESLAILLNS-PKFREKLRTVKWVIVDEIHSLAENKRGVHLSLSLERLEELAGG------------------------ 206 (876)
T ss_pred ecHHHHHHHhcC-hhHHHHHhcCCEEEEechhhhccCccHHHHHHHHHHHHHhcCC------------------------
Confidence 999999887765 222 47899999999999998765555555555555442211
Q ss_pred ccCCCCCCCCceeEEEEEEecCCCchhhhcccc-------CCCeEEecCCccccCcccceeE-----EEeccCCCcHHHH
Q 017196 256 ERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDL-------HHPLFLTTGETRYKLPERLESY-----KLICESKLKPLYL 323 (375)
Q Consensus 256 ~~~~~~~~~~~~q~i~~SATl~~~~~~~~~~~~-------~~~~~i~~~~~~~~~~~~i~~~-----~~~~~~~~k~~~l 323 (375)
..|++++|||+++ ......... ..+..+..... .....+... ............+
T Consensus 207 ----------~~q~IglSATl~~-~~~va~~L~~~~~~~~~r~~~iv~~~~--~k~~~i~v~~p~~~l~~~~~~~~~~~l 273 (876)
T PRK13767 207 ----------EFVRIGLSATIEP-LEEVAKFLVGYEDDGEPRDCEIVDARF--VKPFDIKVISPVDDLIHTPAEEISEAL 273 (876)
T ss_pred ----------CCeEEEEecccCC-HHHHHHHhcCccccCCCCceEEEccCC--CccceEEEeccCccccccccchhHHHH
Confidence 5689999999965 233322211 11112211100 000001000 0001111122222
Q ss_pred HHHHHhc--CCCeEEEEcCChhhHHHHHHHHHHhcC---CcceEEeccccccccccC
Q 017196 324 VALLQSL--GEEKCIVFTSSVESTHRLCTLLNHFGE---LRIKIKEYSGLQRQSVRR 375 (375)
Q Consensus 324 ~~ll~~~--~~~k~lIF~~s~~~a~~l~~~L~~~g~---~~~~~~~lh~~~~~~~R~ 375 (375)
...+... ..+++||||||++.|+.++..|..... .+..+..+||+|++.+|.
T Consensus 274 ~~~L~~~i~~~~~~LVF~nTr~~ae~la~~L~~~~~~~~~~~~i~~hHg~ls~~~R~ 330 (876)
T PRK13767 274 YETLHELIKEHRTTLIFTNTRSGAERVLYNLRKRFPEEYDEDNIGAHHSSLSREVRL 330 (876)
T ss_pred HHHHHHHHhcCCCEEEEeCCHHHHHHHHHHHHHhchhhccccceeeeeCCCCHHHHH
Confidence 2333221 356899999999999999999986321 235799999999999883
No 39
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=99.97 E-value=1.1e-30 Score=264.61 Aligned_cols=267 Identities=19% Similarity=0.177 Sum_probs=185.9
Q ss_pred HHHHHHh-CCCCCccHhhHHHHHHhhCCCCCCC-CEEEECCCCCchHHHhHHHHHHHhhhcccCCceEE-EEcccHHHHH
Q 017196 39 LKVALQN-MGISSLFPVQVAVWQETIGPGLFER-DLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRAL-VVLPTRDLAL 115 (375)
Q Consensus 39 i~~~l~~-~g~~~~~~~Q~~~~~~~~~~~~~~~-~~ii~a~TGsGKTl~~~l~il~~l~~~~~~~~~~l-il~Pt~~L~~ 115 (375)
..+.++. .||. |+|+|.++++.++ .|+ ++++++|||||||.+++++.+.. ... ...++.| +++|||+|++
T Consensus 4 f~~ff~~~~G~~-PtpiQ~~~i~~il----~G~~~v~~~apTGSGKTaa~aafll~~-~~~-~~~~~rLv~~vPtReLa~ 76 (844)
T TIGR02621 4 FDEWYQGLHGYS-PFPWQLSLAERFV----AGQPPESCSTPTGLGKTSIIAAWLLAV-EIG-AKVPRRLVYVVNRRTVVD 76 (844)
T ss_pred HHHHHHHHhCCC-CCHHHHHHHHHHH----cCCCcceEecCCCCcccHHHHHhhccc-ccc-ccccceEEEeCchHHHHH
Confidence 3445554 5886 9999999998877 676 67888999999999765544422 222 2334444 5779999999
Q ss_pred HHHHHHHHhcccc-----------------------CceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcCC
Q 017196 116 QVKDVFAAIAPAV-----------------------GLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSA 172 (375)
Q Consensus 116 Q~~~~~~~~~~~~-----------------------~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (375)
|+++.+++++... ++++..++||.....+. +.+..+
T Consensus 77 Qi~~~~~~~~k~l~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~GG~~~~~q~---------------------~~l~~~ 135 (844)
T TIGR02621 77 QVTEEAEKIGERLPDVPEVEAALWALCSTRPEKKDRPLAISTLRGQFADNDEW---------------------MLDPHR 135 (844)
T ss_pred HHHHHHHHHHHHhcccchhhhhhhhhhccccccccCCeEEEEEECCCChHHHH---------------------HhcCCC
Confidence 9999999988754 48889999998765553 466778
Q ss_pred CcEEEeCcHHHHHHHhhc--------CCC---CCCCccEEEEecchhhhhHhHHhHHHHHHHhhhccccccccccccccc
Q 017196 173 VDILVATPGRLMDHINAT--------RGF---TLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLP 241 (375)
Q Consensus 173 ~~IiV~Tp~~l~~~l~~~--------~~~---~~~~~~~vIiDE~h~l~~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~ 241 (375)
++|||||++.+.+-.-.. ..+ .++.+++||+|||| ++.+|...+..|+..+.....
T Consensus 136 p~IIVgT~D~i~sr~L~~gYg~~~~~~pi~ag~L~~v~~LVLDEAD--Ld~gF~~~l~~Il~~l~rp~~----------- 202 (844)
T TIGR02621 136 PAVIVGTVDMIGSRLLFSGYGCGFKSRPLHAGFLGQDALIVHDEAH--LEPAFQELLKQIMNEQQRPPD----------- 202 (844)
T ss_pred CcEEEECHHHHcCCccccccccccccccchhhhhccceEEEEehhh--hccccHHHHHHHHHhcccCcc-----------
Confidence 999999965543211100 001 26789999999999 577898888888886421110
Q ss_pred ccccccccccccccccCCCCCCCCceeEEEEEEecCCCchhhhccccCCCeEEecCCccccCcccceeEEEeccCCCcHH
Q 017196 242 SAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPL 321 (375)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~k~~ 321 (375)
..+.|+++||||++.++..+...++.++..+.+..... ....+.++ +.++...|..
T Consensus 203 ----------------------~rprQtLLFSAT~p~ei~~l~~~~~~~p~~i~V~~~~l-~a~ki~q~-v~v~~e~Kl~ 258 (844)
T TIGR02621 203 ----------------------FLPLRVVELTATSRTDGPDRTTLLSAEDYKHPVLKKRL-AAKKIVKL-VPPSDEKFLS 258 (844)
T ss_pred ----------------------cccceEEEEecCCCccHHHHHHHHccCCceeecccccc-cccceEEE-EecChHHHHH
Confidence 01368999999999888777777776676665544332 22344443 3334344443
Q ss_pred HHHHHHH---hcCCCeEEEEcCChhhHHHHHHHHHHhcCCcceEEeccccccccccC
Q 017196 322 YLVALLQ---SLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRR 375 (375)
Q Consensus 322 ~l~~ll~---~~~~~k~lIF~~s~~~a~~l~~~L~~~g~~~~~~~~lh~~~~~~~R~ 375 (375)
.+...+. ...++++||||||+++|+.+++.|...+ + ..+||+|++.+|+
T Consensus 259 ~lv~~L~~ll~e~g~~vLVF~NTv~~Aq~L~~~L~~~g---~--~lLHG~m~q~dR~ 310 (844)
T TIGR02621 259 TMVKELNLLMKDSGGAILVFCRTVKHVRKVFAKLPKEK---F--ELLTGTLRGAERD 310 (844)
T ss_pred HHHHHHHHHHhhCCCcEEEEECCHHHHHHHHHHHHhcC---C--eEeeCCCCHHHHh
Confidence 3333221 2345789999999999999999999654 4 8999999999984
No 40
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=99.97 E-value=5.9e-31 Score=265.16 Aligned_cols=272 Identities=23% Similarity=0.296 Sum_probs=206.1
Q ss_pred CCCCCHHHHHHHHhCCCCCccHhhHHHHHHhhCCCCCCCCEEEECCCCCchHHHhHHHHHHHhhhcc----cCCceEEEE
Q 017196 32 LPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRA----VRCLRALVV 107 (375)
Q Consensus 32 ~~~l~~~i~~~l~~~g~~~~~~~Q~~~~~~~~~~~~~~~~~ii~a~TGsGKTl~~~l~il~~l~~~~----~~~~~~lil 107 (375)
++.|++.+.+++... |..||+.|.+||+.+. +|+|++|.||||||||+|+.+|++..+.+.. ..+..+|||
T Consensus 5 ~~~l~~~v~~~~~~~-~~~~t~~Q~~a~~~i~----~G~nvLiiAPTGsGKTeAAfLpil~~l~~~~~~~~~~~i~~lYI 79 (814)
T COG1201 5 FNILDPRVREWFKRK-FTSLTPPQRYAIPEIH----SGENVLIIAPTGSGKTEAAFLPVINELLSLGKGKLEDGIYALYI 79 (814)
T ss_pred hhhcCHHHHHHHHHh-cCCCCHHHHHHHHHHh----CCCceEEEcCCCCChHHHHHHHHHHHHHhccCCCCCCceEEEEe
Confidence 345999999999887 8899999999988877 7999999999999999999999999998872 345789999
Q ss_pred cccHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcCCCcEEEeCcHHHHHHH
Q 017196 108 LPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHI 187 (375)
Q Consensus 108 ~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiV~Tp~~l~~~l 187 (375)
+|.++|.+.+.+.++.++...|+.+..-+|++...... +.....+||+++||+.|.-++
T Consensus 80 sPLkALn~Di~~rL~~~~~~~G~~v~vRhGDT~~~er~---------------------r~~~~PPdILiTTPEsL~lll 138 (814)
T COG1201 80 SPLKALNNDIRRRLEEPLRELGIEVAVRHGDTPQSEKQ---------------------KMLKNPPHILITTPESLAILL 138 (814)
T ss_pred CcHHHHHHHHHHHHHHHHHHcCCccceecCCCChHHhh---------------------hccCCCCcEEEeChhHHHHHh
Confidence 99999999999999999999999998888887755543 345567899999999998877
Q ss_pred hhcCC-CCCCCccEEEEecchhhhhHhHHhHHHHHHHhhhcccccccccccccccccccccccccccccccCCCCCCCCc
Q 017196 188 NATRG-FTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPR 266 (375)
Q Consensus 188 ~~~~~-~~~~~~~~vIiDE~h~l~~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (375)
...+. -.++++++|||||+|.+.....+.++..-++.+..... +
T Consensus 139 ~~~~~r~~l~~vr~VIVDEiHel~~sKRG~~Lsl~LeRL~~l~~-----------------------------------~ 183 (814)
T COG1201 139 NSPKFRELLRDVRYVIVDEIHALAESKRGVQLALSLERLRELAG-----------------------------------D 183 (814)
T ss_pred cCHHHHHHhcCCcEEEeehhhhhhccccchhhhhhHHHHHhhCc-----------------------------------c
Confidence 66321 24889999999999999877655566666655554221 5
Q ss_pred eeEEEEEEecCCCchhhhccccCC--CeEE-ecCCccccCcccceeEEEecc---------CCCcHHHHHHHHHhcCCCe
Q 017196 267 LVKMVLSATLTQDPNKLAQLDLHH--PLFL-TTGETRYKLPERLESYKLICE---------SKLKPLYLVALLQSLGEEK 334 (375)
Q Consensus 267 ~q~i~~SATl~~~~~~~~~~~~~~--~~~i-~~~~~~~~~~~~i~~~~~~~~---------~~~k~~~l~~ll~~~~~~k 334 (375)
.|.|++|||+. +..+.++..... +..+ .+.... ..+....... ....+..+.+++++.. .
T Consensus 184 ~qRIGLSATV~-~~~~varfL~g~~~~~~Iv~~~~~k-----~~~i~v~~p~~~~~~~~~~~~~~~~~i~~~v~~~~--t 255 (814)
T COG1201 184 FQRIGLSATVG-PPEEVAKFLVGFGDPCEIVDVSAAK-----KLEIKVISPVEDLIYDEELWAALYERIAELVKKHR--T 255 (814)
T ss_pred cEEEeehhccC-CHHHHHHHhcCCCCceEEEEcccCC-----cceEEEEecCCccccccchhHHHHHHHHHHHhhcC--c
Confidence 68999999996 445554444433 3333 322221 1111111111 1123444555555544 8
Q ss_pred EEEEcCChhhHHHHHHHHHHhcCCcceEEecccccccccc
Q 017196 335 CIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVR 374 (375)
Q Consensus 335 ~lIF~~s~~~a~~l~~~L~~~g~~~~~~~~lh~~~~~~~R 374 (375)
+|||+||+..|+.++..|++.+. ..+..+||.++.++|
T Consensus 256 tLIF~NTR~~aE~l~~~L~~~~~--~~i~~HHgSlSre~R 293 (814)
T COG1201 256 TLIFTNTRSGAERLAFRLKKLGP--DIIEVHHGSLSRELR 293 (814)
T ss_pred EEEEEeChHHHHHHHHHHHHhcC--CceeeecccccHHHH
Confidence 99999999999999999997653 679999999999887
No 41
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=99.97 E-value=2.1e-30 Score=228.19 Aligned_cols=196 Identities=31% Similarity=0.502 Sum_probs=169.1
Q ss_pred CCHHHHHHHHhCCCCCccHhhHHHHHHhhCCCCCCCCEEEECCCCCchHHHhHHHHHHHhhhcc-cCCceEEEEcccHHH
Q 017196 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRA-VRCLRALVVLPTRDL 113 (375)
Q Consensus 35 l~~~i~~~l~~~g~~~~~~~Q~~~~~~~~~~~~~~~~~ii~a~TGsGKTl~~~l~il~~l~~~~-~~~~~~lil~Pt~~L 113 (375)
+++.+.+.+.+.|+..|+++|.++++.+. +|+|+++++|||+|||++|+++++..+.... ..+++++|++|+++|
T Consensus 6 ~~~~i~~~l~~~~~~~~~~~Q~~~~~~~~----~~~~~li~~~TG~GKT~~~~~~~l~~~~~~~~~~~~~viii~p~~~L 81 (203)
T cd00268 6 LSPELLRGIYALGFEKPTPIQARAIPPLL----SGRDVIGQAQTGSGKTAAFLIPILEKLDPSPKKDGPQALILAPTREL 81 (203)
T ss_pred CCHHHHHHHHHcCCCCCCHHHHHHHHHHh----cCCcEEEECCCCCcHHHHHHHHHHHHHHhhcccCCceEEEEcCCHHH
Confidence 99999999999999999999999998887 4899999999999999999999999988752 355789999999999
Q ss_pred HHHHHHHHHHhccccCceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcCCCcEEEeCcHHHHHHHhhcCCC
Q 017196 114 ALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGF 193 (375)
Q Consensus 114 ~~Q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiV~Tp~~l~~~l~~~~~~ 193 (375)
+.|+...++.+....++++..++|+........ .+.++++|+|+||+++.+.+.+ ...
T Consensus 82 ~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~iiv~T~~~l~~~l~~-~~~ 139 (203)
T cd00268 82 ALQIAEVARKLGKHTNLKVVVIYGGTSIDKQIR---------------------KLKRGPHIVVATPGRLLDLLER-GKL 139 (203)
T ss_pred HHHHHHHHHHHhccCCceEEEEECCCCHHHHHH---------------------HhcCCCCEEEEChHHHHHHHHc-CCC
Confidence 999999999998877899999999876544422 3445789999999999999887 447
Q ss_pred CCCCccEEEEecchhhhhHhHHhHHHHHHHhhhcccccccccccccccccccccccccccccccCCCCCCCCceeEEEEE
Q 017196 194 TLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLS 273 (375)
Q Consensus 194 ~~~~~~~vIiDE~h~l~~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~S 273 (375)
.+++++++|+||+|.+.+.++...+..+...++. +.|++++|
T Consensus 140 ~~~~l~~lIvDE~h~~~~~~~~~~~~~~~~~l~~--------------------------------------~~~~~~~S 181 (203)
T cd00268 140 DLSKVKYLVLDEADRMLDMGFEDQIREILKLLPK--------------------------------------DRQTLLFS 181 (203)
T ss_pred ChhhCCEEEEeChHHhhccChHHHHHHHHHhCCc--------------------------------------ccEEEEEe
Confidence 7889999999999999877777778877777654 67899999
Q ss_pred EecCCCchhhhccccCCCeEE
Q 017196 274 ATLTQDPNKLAQLDLHHPLFL 294 (375)
Q Consensus 274 ATl~~~~~~~~~~~~~~~~~i 294 (375)
||+++....+...++.++..+
T Consensus 182 AT~~~~~~~~~~~~~~~~~~~ 202 (203)
T cd00268 182 ATMPKEVRDLARKFLRNPVRI 202 (203)
T ss_pred ccCCHHHHHHHHHHCCCCEEe
Confidence 999988888888888777654
No 42
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.97 E-value=1.4e-30 Score=256.97 Aligned_cols=254 Identities=21% Similarity=0.284 Sum_probs=177.5
Q ss_pred hCCCCCccHhhHHHHHHhhCCCCCCCCEEEECCCCCchHHHhHHHHHHHhhhcccCCceEEEEcccHHHHHHHHHHHHHh
Q 017196 45 NMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAI 124 (375)
Q Consensus 45 ~~g~~~~~~~Q~~~~~~~~~~~~~~~~~ii~a~TGsGKTl~~~l~il~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~ 124 (375)
.+||..|+|+|.++++.++ +|+|+++.+|||+|||++|++|++.. +..+||++|+++|+.|+...++.+
T Consensus 6 ~~g~~~~r~~Q~~ai~~~l----~g~dvlv~apTGsGKTl~y~lp~l~~-------~~~~lVi~P~~~L~~dq~~~l~~~ 74 (470)
T TIGR00614 6 VFGLSSFRPVQLEVINAVL----LGRDCFVVMPTGGGKSLCYQLPALCS-------DGITLVISPLISLMEDQVLQLKAS 74 (470)
T ss_pred hcCCCCCCHHHHHHHHHHH----cCCCEEEEcCCCCcHhHHHHHHHHHc-------CCcEEEEecHHHHHHHHHHHHHHc
Confidence 4799999999999998877 68899999999999999999999752 236999999999999999988764
Q ss_pred ccccCceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhh-cCCCcEEEeCcHHHHHHHhhcCCC-CCCCccEEE
Q 017196 125 APAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQEL-QSAVDILVATPGRLMDHINATRGF-TLEHLCYLV 202 (375)
Q Consensus 125 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~IiV~Tp~~l~~~l~~~~~~-~~~~~~~vI 202 (375)
++.+..+.++....+... +...+ .+.++|+++||+++.........+ ....+++||
T Consensus 75 ----gi~~~~l~~~~~~~~~~~------------------i~~~~~~~~~~il~~TPe~l~~~~~~~~~l~~~~~i~~iV 132 (470)
T TIGR00614 75 ----GIPATFLNSSQSKEQQKN------------------VLTDLKDGKIKLLYVTPEKCSASNRLLQTLEERKGITLIA 132 (470)
T ss_pred ----CCcEEEEeCCCCHHHHHH------------------HHHHHhcCCCCEEEECHHHHcCchhHHHHHHhcCCcCEEE
Confidence 677888877765443321 11122 345899999999875422110112 467899999
Q ss_pred EecchhhhhHh--HHhHHHHHHHhhhcccccccccccccccccccccccccccccccCCCCCCCCceeEEEEEEecCCCc
Q 017196 203 VDETDRLLREA--YQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDP 280 (375)
Q Consensus 203 iDE~h~l~~~~--~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~~ 280 (375)
|||||++.+++ |...+..+....... ++.+++++|||+++..
T Consensus 133 iDEaH~i~~~g~~fr~~~~~l~~l~~~~------------------------------------~~~~~l~lTAT~~~~~ 176 (470)
T TIGR00614 133 VDEAHCISQWGHDFRPDYKALGSLKQKF------------------------------------PNVPIMALTATASPSV 176 (470)
T ss_pred EeCCcccCccccccHHHHHHHHHHHHHc------------------------------------CCCceEEEecCCCHHH
Confidence 99999998764 555544443222211 1457899999998765
Q ss_pred hhhhccc--cCCCeEEecCCccccCcccceeEEEeccCCCcHHHHHHHHH-hcCCCeEEEEcCChhhHHHHHHHHHHhcC
Q 017196 281 NKLAQLD--LHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQ-SLGEEKCIVFTSSVESTHRLCTLLNHFGE 357 (375)
Q Consensus 281 ~~~~~~~--~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~-~~~~~k~lIF~~s~~~a~~l~~~L~~~g~ 357 (375)
....... +.++..+...... .++. +.+..........+...+. ...+.++||||+|+++|+.++..|+..
T Consensus 177 ~~di~~~l~l~~~~~~~~s~~r----~nl~-~~v~~~~~~~~~~l~~~l~~~~~~~~~IIF~~s~~~~e~la~~L~~~-- 249 (470)
T TIGR00614 177 REDILRQLNLKNPQIFCTSFDR----PNLY-YEVRRKTPKILEDLLRFIRKEFKGKSGIIYCPSRKKSEQVTASLQNL-- 249 (470)
T ss_pred HHHHHHHcCCCCCcEEeCCCCC----CCcE-EEEEeCCccHHHHHHHHHHHhcCCCceEEEECcHHHHHHHHHHHHhc--
Confidence 5433322 3455544433322 2221 1111122234455666665 445667899999999999999999954
Q ss_pred CcceEEeccccccccccC
Q 017196 358 LRIKIKEYSGLQRQSVRR 375 (375)
Q Consensus 358 ~~~~~~~lh~~~~~~~R~ 375 (375)
|+.+..+||+|++++|+
T Consensus 250 -g~~~~~~H~~l~~~eR~ 266 (470)
T TIGR00614 250 -GIAAGAYHAGLEISARD 266 (470)
T ss_pred -CCCeeEeeCCCCHHHHH
Confidence 49999999999999884
No 43
>PRK01172 ski2-like helicase; Provisional
Probab=99.97 E-value=3.2e-30 Score=265.07 Aligned_cols=273 Identities=19% Similarity=0.208 Sum_probs=191.2
Q ss_pred ccccCCCCCCCCCCHHHHHHHHhCCCCCccHhhHHHHHHhhCCCCCCCCEEEECCCCCchHHHhHHHHHHHhhhcccCCc
Q 017196 23 LFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCL 102 (375)
Q Consensus 23 ~~~~~~~~~~~~l~~~i~~~l~~~g~~~~~~~Q~~~~~~~~~~~~~~~~~ii~a~TGsGKTl~~~l~il~~l~~~~~~~~ 102 (375)
.|++++ +++.+.+.+.+.++. |+++|.++++.+. +|+|+++++|||||||++|.+++++.+..+ .
T Consensus 2 ~~~~~~------l~~~~~~~~~~~~~~-l~~~Q~~ai~~l~----~~~nvlv~apTGSGKTl~a~lail~~l~~~----~ 66 (674)
T PRK01172 2 KISDLG------YDDEFLNLFTGNDFE-LYDHQRMAIEQLR----KGENVIVSVPTAAGKTLIAYSAIYETFLAG----L 66 (674)
T ss_pred cHhhcC------CCHHHHHHHhhCCCC-CCHHHHHHHHHHh----cCCcEEEECCCCchHHHHHHHHHHHHHHhC----C
Confidence 456666 999999999999985 9999999988764 789999999999999999999999887653 3
Q ss_pred eEEEEcccHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcCCCcEEEeCcHH
Q 017196 103 RALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGR 182 (375)
Q Consensus 103 ~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiV~Tp~~ 182 (375)
+++|++|+++||.|+++.++++. ..+.++...+|+...... ....++|+|+||++
T Consensus 67 k~v~i~P~raLa~q~~~~~~~l~-~~g~~v~~~~G~~~~~~~------------------------~~~~~dIiv~Tpek 121 (674)
T PRK01172 67 KSIYIVPLRSLAMEKYEELSRLR-SLGMRVKISIGDYDDPPD------------------------FIKRYDVVILTSEK 121 (674)
T ss_pred cEEEEechHHHHHHHHHHHHHHh-hcCCeEEEEeCCCCCChh------------------------hhccCCEEEECHHH
Confidence 79999999999999999999864 357888888887542211 12356999999999
Q ss_pred HHHHHhhcCCCCCCCccEEEEecchhhhhHhHHhHHHHHHHhhhcccccccccccccccccccccccccccccccCCCCC
Q 017196 183 LMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDK 262 (375)
Q Consensus 183 l~~~l~~~~~~~~~~~~~vIiDE~h~l~~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (375)
+..+++++ ...+.++++||+||+|.+.+.++...++.++..++....
T Consensus 122 ~~~l~~~~-~~~l~~v~lvViDEaH~l~d~~rg~~le~ll~~~~~~~~-------------------------------- 168 (674)
T PRK01172 122 ADSLIHHD-PYIINDVGLIVADEIHIIGDEDRGPTLETVLSSARYVNP-------------------------------- 168 (674)
T ss_pred HHHHHhCC-hhHHhhcCEEEEecchhccCCCccHHHHHHHHHHHhcCc--------------------------------
Confidence 98888773 355789999999999999877777777777766544221
Q ss_pred CCCceeEEEEEEecCCCchhhhccccCCCeEEecCCccccCcccce---eEEEeccCCCcHHHHHHHHHh--cCCCeEEE
Q 017196 263 PYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLE---SYKLICESKLKPLYLVALLQS--LGEEKCIV 337 (375)
Q Consensus 263 ~~~~~q~i~~SATl~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~i~---~~~~~~~~~~k~~~l~~ll~~--~~~~k~lI 337 (375)
+.|++++|||+++ ..++..++.... +........+...+. ..+........ ..+..++.. ..++++||
T Consensus 169 ---~~riI~lSATl~n-~~~la~wl~~~~--~~~~~r~vpl~~~i~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~vLV 241 (674)
T PRK01172 169 ---DARILALSATVSN-ANELAQWLNASL--IKSNFRPVPLKLGILYRKRLILDGYERSQ-VDINSLIKETVNDGGQVLV 241 (674)
T ss_pred ---CCcEEEEeCccCC-HHHHHHHhCCCc--cCCCCCCCCeEEEEEecCeeeeccccccc-ccHHHHHHHHHhCCCcEEE
Confidence 5689999999965 444444322111 111110000000000 01110011111 113334443 24678999
Q ss_pred EcCChhhHHHHHHHHHHhcCC----------------------cceEEeccccccccccC
Q 017196 338 FTSSVESTHRLCTLLNHFGEL----------------------RIKIKEYSGLQRQSVRR 375 (375)
Q Consensus 338 F~~s~~~a~~l~~~L~~~g~~----------------------~~~~~~lh~~~~~~~R~ 375 (375)
||+++++|+.++..|...... ...+.++||+|++++|+
T Consensus 242 F~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~~hagl~~~eR~ 301 (674)
T PRK01172 242 FVSSRKNAEDYAEMLIQHFPEFNDFKVSSENNNVYDDSLNEMLPHGVAFHHAGLSNEQRR 301 (674)
T ss_pred EeccHHHHHHHHHHHHHhhhhcccccccccccccccHHHHHHHhcCEEEecCCCCHHHHH
Confidence 999999999999998653110 12378899999999884
No 44
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.97 E-value=5.8e-31 Score=249.95 Aligned_cols=295 Identities=25% Similarity=0.278 Sum_probs=238.4
Q ss_pred CCCCccCccccCCCCCCCCCCHHHHHHHHhCCCCCccHhhHHHHHHhhCCCCCCCCEEEECCCCCchHHHhHHHHHHHhh
Q 017196 16 RSPVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLS 95 (375)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~l~~~i~~~l~~~g~~~~~~~Q~~~~~~~~~~~~~~~~~ii~a~TGsGKTl~~~l~il~~l~ 95 (375)
..|.++.+|+++.-+.. .++.+++.+...||..|+|.|.+|++.++ ++++++.|+|||+|||++|.+|++..+.
T Consensus 126 ~~~~~l~~f~~lt~~~~--~~~~ll~nl~~~~F~~Pt~iq~~aipvfl----~~r~~lAcapTGsgKtlaf~~Pil~~L~ 199 (593)
T KOG0344|consen 126 HLPPPLLSFSDLTYDYS--MNKRLLENLQELGFDEPTPIQKQAIPVFL----EKRDVLACAPTGSGKTLAFNLPILQHLK 199 (593)
T ss_pred CCCCccccccccchhhh--hcHHHHHhHhhCCCCCCCcccchhhhhhh----cccceEEeccCCCcchhhhhhHHHHHHH
Confidence 34888888888774444 88999999999999999999999977666 7999999999999999999999999998
Q ss_pred hcc----cCCceEEEEcccHHHHHHHHHHHHHhc--cccCceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhh
Q 017196 96 NRA----VRCLRALVVLPTRDLALQVKDVFAAIA--PAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQEL 169 (375)
Q Consensus 96 ~~~----~~~~~~lil~Pt~~L~~Q~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (375)
... ..+.+++|+.||++|+.|+++++.++. +..++.+............ .....
T Consensus 200 ~~~~~~~~~gl~a~Il~ptreLa~Qi~re~~k~~~~~~t~~~a~~~~~~~~~~qk--------------------~a~~~ 259 (593)
T KOG0344|consen 200 DLSQEKHKVGLRALILSPTRELAAQIYREMRKYSIDEGTSLRAAQFSKPAYPSQK--------------------PAFLS 259 (593)
T ss_pred HhhcccCccceEEEEecchHHHHHHHHHHHHhcCCCCCCchhhhhcccccchhhc--------------------cchhH
Confidence 765 556789999999999999999999998 5445555444433222111 01112
Q ss_pred cCCCcEEEeCcHHHHHHHhhc-CCCCCCCccEEEEecchhhhhH-hHHhHHHHHHHhhhccccccccccccccccccccc
Q 017196 170 QSAVDILVATPGRLMDHINAT-RGFTLEHLCYLVVDETDRLLRE-AYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSL 247 (375)
Q Consensus 170 ~~~~~IiV~Tp~~l~~~l~~~-~~~~~~~~~~vIiDE~h~l~~~-~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~ 247 (375)
...++|+++||.++..++... ..++++.+.++|+||+|.+++. .|..++..|+..+...
T Consensus 260 ~~k~dili~TP~ri~~~~~~~~~~idl~~V~~lV~dEaD~lfe~~~f~~Qla~I~sac~s~------------------- 320 (593)
T KOG0344|consen 260 DEKYDILISTPMRIVGLLGLGKLNIDLSKVEWLVVDEADLLFEPEFFVEQLADIYSACQSP------------------- 320 (593)
T ss_pred HHHHHHHhcCHHHHHHHhcCCCccchhheeeeEeechHHhhhChhhHHHHHHHHHHHhcCc-------------------
Confidence 235799999999999998773 2368999999999999999999 8888888888887662
Q ss_pred ccccccccccCCCCCCCCceeEEEEEEecCCCchhhhccccCCCeEEecCCccccCcccceeEEEeccCCCcHHHHHHHH
Q 017196 248 KTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALL 327 (375)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll 327 (375)
...+-+||||++..+++.++....++..+.++.........-+...+..++..|...+.+++
T Consensus 321 ------------------~i~~a~FSat~~~~VEE~~~~i~~~~~~vivg~~~sa~~~V~QelvF~gse~~K~lA~rq~v 382 (593)
T KOG0344|consen 321 ------------------DIRVALFSATISVYVEEWAELIKSDLKRVIVGLRNSANETVDQELVFCGSEKGKLLALRQLV 382 (593)
T ss_pred ------------------chhhhhhhccccHHHHHHHHHhhccceeEEEecchhHhhhhhhhheeeecchhHHHHHHHHH
Confidence 44578999999999999999999999998888765443333334445556788999999999
Q ss_pred HhcCCCeEEEEcCChhhHHHHHHHHHHhcCCcceEEeccccccccccC
Q 017196 328 QSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRR 375 (375)
Q Consensus 328 ~~~~~~k~lIF~~s~~~a~~l~~~L~~~g~~~~~~~~lh~~~~~~~R~ 375 (375)
...-..++|||+.+.++|..|...|.. -.++.+..+||+.++.+|+
T Consensus 383 ~~g~~PP~lIfVQs~eRak~L~~~L~~--~~~i~v~vIh~e~~~~qrd 428 (593)
T KOG0344|consen 383 ASGFKPPVLIFVQSKERAKQLFEELEI--YDNINVDVIHGERSQKQRD 428 (593)
T ss_pred hccCCCCeEEEEecHHHHHHHHHHhhh--ccCcceeeEecccchhHHH
Confidence 988777999999999999999999942 3458899999999999885
No 45
>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.97 E-value=4.3e-31 Score=226.83 Aligned_cols=256 Identities=23% Similarity=0.338 Sum_probs=220.3
Q ss_pred ccCccccCCCCCCCCCCHHHHHHHHhCCCCCccHhhHHHHHHhhCCCCCCCCEEEECCCCCchHHHhHHHHHHHhhhccc
Q 017196 20 DVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAV 99 (375)
Q Consensus 20 ~~~~~~~~~~~~~~~l~~~i~~~l~~~g~~~~~~~Q~~~~~~~~~~~~~~~~~ii~a~TGsGKTl~~~l~il~~l~~~~~ 99 (375)
+.+-|.++- |.|++++++-+.||.+|+.+|.+++|..+ .|.|++.+|..|.|||..|++.-++++.-..
T Consensus 40 hssgfrdfl------lkpellraivdcgfehpsevqhecipqai----lgmdvlcqaksgmgktavfvl~tlqqiepv~- 108 (387)
T KOG0329|consen 40 HSSGFRDFL------LKPELLRAIVDCGFEHPSEVQHECIPQAI----LGMDVLCQAKSGMGKTAVFVLATLQQIEPVD- 108 (387)
T ss_pred eccchhhhh------cCHHHHHHHHhccCCCchHhhhhhhhHHh----hcchhheecccCCCceeeeehhhhhhcCCCC-
Confidence 344555555 99999999999999999999999988877 6999999999999999999999999987653
Q ss_pred CCceEEEEcccHHHHHHHHHHHHHhcccc-CceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcCCCcEEEe
Q 017196 100 RCLRALVVLPTRDLALQVKDVFAAIAPAV-GLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVA 178 (375)
Q Consensus 100 ~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiV~ 178 (375)
...-++++|.||+||-|+.+...++++.. ++++...+||...+..... +.+-++|+||
T Consensus 109 g~vsvlvmchtrelafqi~~ey~rfskymP~vkvaVFfGG~~Ikkdee~---------------------lk~~PhivVg 167 (387)
T KOG0329|consen 109 GQVSVLVMCHTRELAFQISKEYERFSKYMPSVKVSVFFGGLFIKKDEEL---------------------LKNCPHIVVG 167 (387)
T ss_pred CeEEEEEEeccHHHHHHHHHHHHHHHhhCCCceEEEEEcceeccccHHH---------------------HhCCCeEEEc
Confidence 34469999999999999999998888766 6899999999887666443 3345699999
Q ss_pred CcHHHHHHHhhcCCCCCCCccEEEEecchhhhhH-hHHhHHHHHHHhhhccccccccccccccccccccccccccccccc
Q 017196 179 TPGRLMDHINATRGFTLEHLCYLVVDETDRLLRE-AYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVER 257 (375)
Q Consensus 179 Tp~~l~~~l~~~~~~~~~~~~~vIiDE~h~l~~~-~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (375)
||++++.+.++ +.+++++++.+|+||||.++.. ..+..++.+....|.
T Consensus 168 TPGrilALvr~-k~l~lk~vkhFvlDEcdkmle~lDMrRDvQEifr~tp~------------------------------ 216 (387)
T KOG0329|consen 168 TPGRILALVRN-RSLNLKNVKHFVLDECDKMLEQLDMRRDVQEIFRMTPH------------------------------ 216 (387)
T ss_pred CcHHHHHHHHh-ccCchhhcceeehhhHHHHHHHHHHHHHHHHHhhcCcc------------------------------
Confidence 99999999998 7799999999999999999876 566777888777666
Q ss_pred CCCCCCCCceeEEEEEEecCCCchhhhccccCCCeEEecCCccccCcccceeEEEeccCCCcHHHHHHHHHhcCCCeEEE
Q 017196 258 GFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIV 337 (375)
Q Consensus 258 ~~~~~~~~~~q~i~~SATl~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~k~lI 337 (375)
.-|++.||||++.+++...++++.+|..+.++....-.-..++++|+...+..|.-.+.++++.....+++|
T Consensus 217 --------~KQvmmfsatlskeiRpvC~kFmQdPmEi~vDdE~KLtLHGLqQ~YvkLke~eKNrkl~dLLd~LeFNQVvI 288 (387)
T KOG0329|consen 217 --------EKQVMMFSATLSKEIRPVCHKFMQDPMEIFVDDEAKLTLHGLQQYYVKLKENEKNRKLNDLLDVLEFNQVVI 288 (387)
T ss_pred --------cceeeeeeeecchhhHHHHHhhhcCchhhhccchhhhhhhhHHHHHHhhhhhhhhhhhhhhhhhhhhcceeE
Confidence 557999999999999999999999999988887665445678888888999999999999999998889999
Q ss_pred EcCChhhHH
Q 017196 338 FTSSVESTH 346 (375)
Q Consensus 338 F~~s~~~a~ 346 (375)
|+.++....
T Consensus 289 FvKsv~Rl~ 297 (387)
T KOG0329|consen 289 FVKSVQRLS 297 (387)
T ss_pred eeehhhhhh
Confidence 999988744
No 46
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=99.97 E-value=3.4e-29 Score=253.50 Aligned_cols=262 Identities=21% Similarity=0.232 Sum_probs=184.7
Q ss_pred CCHHHHHHHHh-CCCCCccHhhHHHHHHhhCCCCCCCCEEEECCCCCchHHHhHHHHHHHhhhcccCCceEEEEcccHHH
Q 017196 35 LDPRLKVALQN-MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDL 113 (375)
Q Consensus 35 l~~~i~~~l~~-~g~~~~~~~Q~~~~~~~~~~~~~~~~~ii~a~TGsGKTl~~~l~il~~l~~~~~~~~~~lil~Pt~~L 113 (375)
.++...+.|++ +||..|+|+|.++++.++ .|+|+++.+|||+|||++|++|++.. ...+||++|+++|
T Consensus 9 ~~~~~~~~l~~~fG~~~~r~~Q~~ai~~il----~g~dvlv~apTGsGKTl~y~lpal~~-------~g~tlVisPl~sL 77 (607)
T PRK11057 9 LESLAKQVLQETFGYQQFRPGQQEIIDAVL----SGRDCLVVMPTGGGKSLCYQIPALVL-------DGLTLVVSPLISL 77 (607)
T ss_pred chhHHHHHHHHHcCCCCCCHHHHHHHHHHH----cCCCEEEEcCCCchHHHHHHHHHHHc-------CCCEEEEecHHHH
Confidence 55566666655 799999999999988877 68999999999999999999999853 2369999999999
Q ss_pred HHHHHHHHHHhccccCceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhh-cCCCcEEEeCcHHHHHHHhhcCC
Q 017196 114 ALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQEL-QSAVDILVATPGRLMDHINATRG 192 (375)
Q Consensus 114 ~~Q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~IiV~Tp~~l~~~l~~~~~ 192 (375)
+.|+...++.. ++.+..+.++......... ...+ .+..+++++||+++...... ..
T Consensus 78 ~~dqv~~l~~~----gi~~~~~~s~~~~~~~~~~------------------~~~~~~g~~~il~~tPe~l~~~~~~-~~ 134 (607)
T PRK11057 78 MKDQVDQLLAN----GVAAACLNSTQTREQQLEV------------------MAGCRTGQIKLLYIAPERLMMDNFL-EH 134 (607)
T ss_pred HHHHHHHHHHc----CCcEEEEcCCCCHHHHHHH------------------HHHHhCCCCcEEEEChHHhcChHHH-HH
Confidence 99999988865 6777777776654433211 1122 24579999999998732211 11
Q ss_pred CCCCCccEEEEecchhhhhHh--HHhHHHHHHHhhhcccccccccccccccccccccccccccccccCCCCCCCCceeEE
Q 017196 193 FTLEHLCYLVVDETDRLLREA--YQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKM 270 (375)
Q Consensus 193 ~~~~~~~~vIiDE~h~l~~~~--~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i 270 (375)
+...++++|||||||++.+++ |...+..+....... ++.+++
T Consensus 135 l~~~~l~~iVIDEaH~i~~~G~~fr~~y~~L~~l~~~~------------------------------------p~~~~v 178 (607)
T PRK11057 135 LAHWNPALLAVDEAHCISQWGHDFRPEYAALGQLRQRF------------------------------------PTLPFM 178 (607)
T ss_pred HhhCCCCEEEEeCccccccccCcccHHHHHHHHHHHhC------------------------------------CCCcEE
Confidence 334578999999999998764 444443332222111 145789
Q ss_pred EEEEecCCCchhhhcc--ccCCCeEEecCCccccCcccceeEEEeccCCCcHHHHHHHHHhcCCCeEEEEcCChhhHHHH
Q 017196 271 VLSATLTQDPNKLAQL--DLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRL 348 (375)
Q Consensus 271 ~~SATl~~~~~~~~~~--~~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~k~lIF~~s~~~a~~l 348 (375)
++|||++......... .+.++......... .++ .+.......+...+...+....++++||||+|+++|+.+
T Consensus 179 ~lTAT~~~~~~~di~~~l~l~~~~~~~~~~~r----~nl--~~~v~~~~~~~~~l~~~l~~~~~~~~IIFc~tr~~~e~l 252 (607)
T PRK11057 179 ALTATADDTTRQDIVRLLGLNDPLIQISSFDR----PNI--RYTLVEKFKPLDQLMRYVQEQRGKSGIIYCNSRAKVEDT 252 (607)
T ss_pred EEecCCChhHHHHHHHHhCCCCeEEEECCCCC----Ccc--eeeeeeccchHHHHHHHHHhcCCCCEEEEECcHHHHHHH
Confidence 9999998765443222 23455443322221 222 222334445566677777777778999999999999999
Q ss_pred HHHHHHhcCCcceEEeccccccccccC
Q 017196 349 CTLLNHFGELRIKIKEYSGLQRQSVRR 375 (375)
Q Consensus 349 ~~~L~~~g~~~~~~~~lh~~~~~~~R~ 375 (375)
+..|+.. |+.+..+||+|+.++|.
T Consensus 253 a~~L~~~---g~~v~~~Ha~l~~~~R~ 276 (607)
T PRK11057 253 AARLQSR---GISAAAYHAGLDNDVRA 276 (607)
T ss_pred HHHHHhC---CCCEEEecCCCCHHHHH
Confidence 9999954 49999999999998873
No 47
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=99.97 E-value=7.7e-29 Score=254.95 Aligned_cols=263 Identities=20% Similarity=0.217 Sum_probs=183.8
Q ss_pred CCHHHHHHHHh-CCCCCccHhhHHHHHHhhCCCCCCCCEEEECCCCCchHHHhHHHHHHHhhhcccCCceEEEEcccHHH
Q 017196 35 LDPRLKVALQN-MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDL 113 (375)
Q Consensus 35 l~~~i~~~l~~-~g~~~~~~~Q~~~~~~~~~~~~~~~~~ii~a~TGsGKTl~~~l~il~~l~~~~~~~~~~lil~Pt~~L 113 (375)
....+...++. +|+..|+|.|.++++.++ .|+|+++++|||+|||+||++|++.. ...+|||+|+++|
T Consensus 444 w~~~L~~~lk~~FG~~sFRp~Q~eaI~aiL----~GrDVLVimPTGSGKSLcYQLPAL~~-------~GiTLVISPLiSL 512 (1195)
T PLN03137 444 WTKKLEVNNKKVFGNHSFRPNQREIINATM----SGYDVFVLMPTGGGKSLTYQLPALIC-------PGITLVISPLVSL 512 (1195)
T ss_pred chHHHHHHHHHHcCCCCCCHHHHHHHHHHH----cCCCEEEEcCCCccHHHHHHHHHHHc-------CCcEEEEeCHHHH
Confidence 56667777765 799999999999988877 79999999999999999999999852 2369999999999
Q ss_pred HHHHHHHHHHhccccCceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhh---cCCCcEEEeCcHHHHH---HH
Q 017196 114 ALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQEL---QSAVDILVATPGRLMD---HI 187 (375)
Q Consensus 114 ~~Q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~IiV~Tp~~l~~---~l 187 (375)
+.++...+... ++.+..+.++.....+... .+.+ .+.++|+++||+++.. ++
T Consensus 513 mqDQV~~L~~~----GI~Aa~L~s~~s~~eq~~i------------------lr~l~s~~g~~~ILyvTPERL~~~d~ll 570 (1195)
T PLN03137 513 IQDQIMNLLQA----NIPAASLSAGMEWAEQLEI------------------LQELSSEYSKYKLLYVTPEKVAKSDSLL 570 (1195)
T ss_pred HHHHHHHHHhC----CCeEEEEECCCCHHHHHHH------------------HHHHHhcCCCCCEEEEChHHhhcchHHH
Confidence 98666555543 7888999998876655322 1222 2568999999999853 22
Q ss_pred hhcCCC-CCCCccEEEEecchhhhhHh--HHhHHHHHHHhhhcccccccccccccccccccccccccccccccCCCCCCC
Q 017196 188 NATRGF-TLEHLCYLVVDETDRLLREA--YQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPY 264 (375)
Q Consensus 188 ~~~~~~-~~~~~~~vIiDE~h~l~~~~--~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (375)
.....+ ....+.+|||||||++..++ |+..+..+-.+....
T Consensus 571 ~~L~~L~~~~~LslIVIDEAHcVSqWGhDFRpdYr~L~~Lr~~f------------------------------------ 614 (1195)
T PLN03137 571 RHLENLNSRGLLARFVIDEAHCVSQWGHDFRPDYQGLGILKQKF------------------------------------ 614 (1195)
T ss_pred HHHHhhhhccccceeccCcchhhhhcccchHHHHHHHHHHHHhC------------------------------------
Confidence 221111 23458899999999998875 665554432221111
Q ss_pred CceeEEEEEEecCCCchhhhcccc--CCCeEEecCCccccCcccceeEEEeccCCC-cHHHHHHHHHhc-CCCeEEEEcC
Q 017196 265 PRLVKMVLSATLTQDPNKLAQLDL--HHPLFLTTGETRYKLPERLESYKLICESKL-KPLYLVALLQSL-GEEKCIVFTS 340 (375)
Q Consensus 265 ~~~q~i~~SATl~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~-k~~~l~~ll~~~-~~~k~lIF~~ 340 (375)
++.+++++|||.+..+...+...+ .++..+.....+ .++ ++....... ....+..+++.. ...++||||+
T Consensus 615 p~vPilALTATAT~~V~eDI~~~L~l~~~~vfr~Sf~R----pNL--~y~Vv~k~kk~le~L~~~I~~~~~~esgIIYC~ 688 (1195)
T PLN03137 615 PNIPVLALTATATASVKEDVVQALGLVNCVVFRQSFNR----PNL--WYSVVPKTKKCLEDIDKFIKENHFDECGIIYCL 688 (1195)
T ss_pred CCCCeEEEEecCCHHHHHHHHHHcCCCCcEEeecccCc----cce--EEEEeccchhHHHHHHHHHHhcccCCCceeEeC
Confidence 145789999999987665443333 344333222221 222 233333322 234566666543 3568999999
Q ss_pred ChhhHHHHHHHHHHhcCCcceEEeccccccccccC
Q 017196 341 SVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRR 375 (375)
Q Consensus 341 s~~~a~~l~~~L~~~g~~~~~~~~lh~~~~~~~R~ 375 (375)
++++|+.++..|+.. |+.+..|||+|++.+|.
T Consensus 689 SRke~E~LAe~L~~~---Gika~~YHAGLs~eeR~ 720 (1195)
T PLN03137 689 SRMDCEKVAERLQEF---GHKAAFYHGSMDPAQRA 720 (1195)
T ss_pred chhHHHHHHHHHHHC---CCCeeeeeCCCCHHHHH
Confidence 999999999999954 49999999999999884
No 48
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=99.97 E-value=5.6e-29 Score=252.27 Aligned_cols=255 Identities=18% Similarity=0.225 Sum_probs=185.8
Q ss_pred HHHh-CCCCCccHhhHHHHHHhhCCCCCCCCEEEECCCCCchHHHhHHHHHHHhhhcccCCceEEEEcccHHHHHHHHHH
Q 017196 42 ALQN-MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDV 120 (375)
Q Consensus 42 ~l~~-~g~~~~~~~Q~~~~~~~~~~~~~~~~~ii~a~TGsGKTl~~~l~il~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~ 120 (375)
.|++ +||.+|+|+|.++++.++ .|+|+++++|||+|||++|++|++.. ...++|++|+++|+.|+...
T Consensus 4 ~l~~~fg~~~fr~~Q~~~i~~il----~g~dvlv~~PTG~GKTl~y~lpal~~-------~g~~lVisPl~sL~~dq~~~ 72 (591)
T TIGR01389 4 VLKRTFGYDDFRPGQEEIISHVL----DGRDVLVVMPTGGGKSLCYQVPALLL-------KGLTVVISPLISLMKDQVDQ 72 (591)
T ss_pred HHHHhcCCCCCCHHHHHHHHHHH----cCCCEEEEcCCCccHhHHHHHHHHHc-------CCcEEEEcCCHHHHHHHHHH
Confidence 4544 799999999999988877 68999999999999999999999742 23689999999999999998
Q ss_pred HHHhccccCceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHh-hcCCCcEEEeCcHHHHHHHhhcCCCCCCCcc
Q 017196 121 FAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQE-LQSAVDILVATPGRLMDHINATRGFTLEHLC 199 (375)
Q Consensus 121 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~IiV~Tp~~l~~~l~~~~~~~~~~~~ 199 (375)
++.+ ++.+..++++.+...... .... ..+.++|+++||+++...... ..+....++
T Consensus 73 l~~~----gi~~~~~~s~~~~~~~~~------------------~~~~l~~~~~~il~~tpe~l~~~~~~-~~l~~~~l~ 129 (591)
T TIGR01389 73 LRAA----GVAAAYLNSTLSAKEQQD------------------IEKALVNGELKLLYVAPERLEQDYFL-NMLQRIPIA 129 (591)
T ss_pred HHHc----CCcEEEEeCCCCHHHHHH------------------HHHHHhCCCCCEEEEChhHhcChHHH-HHHhcCCCC
Confidence 8875 678888888876554422 1122 235689999999998653332 224556899
Q ss_pred EEEEecchhhhhHh--HHhHHHHHHHhhhcccccccccccccccccccccccccccccccCCCCCCCCceeEEEEEEecC
Q 017196 200 YLVVDETDRLLREA--YQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLT 277 (375)
Q Consensus 200 ~vIiDE~h~l~~~~--~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~ 277 (375)
+|||||||++..++ |...+..+.......+ +.+++++|||.+
T Consensus 130 ~iViDEaH~i~~~g~~frp~y~~l~~l~~~~~------------------------------------~~~vi~lTAT~~ 173 (591)
T TIGR01389 130 LVAVDEAHCVSQWGHDFRPEYQRLGSLAERFP------------------------------------QVPRIALTATAD 173 (591)
T ss_pred EEEEeCCcccccccCccHHHHHHHHHHHHhCC------------------------------------CCCEEEEEeCCC
Confidence 99999999997754 5555555544433211 234899999998
Q ss_pred CCchhhhcccc--CCCeEEecCCccccCcccceeEEEeccCCCcHHHHHHHHHhcCCCeEEEEcCChhhHHHHHHHHHHh
Q 017196 278 QDPNKLAQLDL--HHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHF 355 (375)
Q Consensus 278 ~~~~~~~~~~~--~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~k~lIF~~s~~~a~~l~~~L~~~ 355 (375)
......+...+ .++..+..... ..++ .+.......+...+.+.+....+.++||||+|+++|+.+++.|..
T Consensus 174 ~~~~~~i~~~l~~~~~~~~~~~~~----r~nl--~~~v~~~~~~~~~l~~~l~~~~~~~~IIf~~sr~~~e~la~~L~~- 246 (591)
T TIGR01389 174 AETRQDIRELLRLADANEFITSFD----RPNL--RFSVVKKNNKQKFLLDYLKKHRGQSGIIYASSRKKVEELAERLES- 246 (591)
T ss_pred HHHHHHHHHHcCCCCCCeEecCCC----CCCc--EEEEEeCCCHHHHHHHHHHhcCCCCEEEEECcHHHHHHHHHHHHh-
Confidence 77665444433 23333322211 1222 233334556677788888877778999999999999999999995
Q ss_pred cCCcceEEeccccccccccC
Q 017196 356 GELRIKIKEYSGLQRQSVRR 375 (375)
Q Consensus 356 g~~~~~~~~lh~~~~~~~R~ 375 (375)
.|+.+..+||+|+.++|.
T Consensus 247 --~g~~~~~~H~~l~~~~R~ 264 (591)
T TIGR01389 247 --QGISALAYHAGLSNKVRA 264 (591)
T ss_pred --CCCCEEEEECCCCHHHHH
Confidence 458999999999998873
No 49
>PRK09401 reverse gyrase; Reviewed
Probab=99.97 E-value=1.7e-28 Score=260.60 Aligned_cols=279 Identities=20% Similarity=0.273 Sum_probs=192.3
Q ss_pred HHHHHHHh-CCCCCccHhhHHHHHHhhCCCCCCCCEEEECCCCCchHHHhHHHHHHHhhhcccCCceEEEEcccHHHHHH
Q 017196 38 RLKVALQN-MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQ 116 (375)
Q Consensus 38 ~i~~~l~~-~g~~~~~~~Q~~~~~~~~~~~~~~~~~ii~a~TGsGKTl~~~l~il~~l~~~~~~~~~~lil~Pt~~L~~Q 116 (375)
++.+.+.+ .|+ .|+++|..+++.++ .|+|++++||||+|||. |.+++...+.. ++.+++||+||++|+.|
T Consensus 68 ~~~~~f~~~~G~-~pt~iQ~~~i~~il----~g~dv~i~ApTGsGKT~-f~l~~~~~l~~---~g~~alIL~PTreLa~Q 138 (1176)
T PRK09401 68 EFEKFFKKKTGS-KPWSLQRTWAKRLL----LGESFAIIAPTGVGKTT-FGLVMSLYLAK---KGKKSYIIFPTRLLVEQ 138 (1176)
T ss_pred HHHHHHHHhcCC-CCcHHHHHHHHHHH----CCCcEEEEcCCCCCHHH-HHHHHHHHHHh---cCCeEEEEeccHHHHHH
Confidence 34445654 476 89999999988777 69999999999999996 55555555433 35689999999999999
Q ss_pred HHHHHHHhccccCceEEEeecCCch-HHHHHHHhhcCccccCccCCchhHHHhhc-CCCcEEEeCcHHHHHHHhhcCCCC
Q 017196 117 VKDVFAAIAPAVGLSVGLAVGQSSI-ADEISELIKRPKLEAGICYDPEDVLQELQ-SAVDILVATPGRLMDHINATRGFT 194 (375)
Q Consensus 117 ~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~IiV~Tp~~l~~~l~~~~~~~ 194 (375)
+++.++.++...++.+..+.|+... ..+. +++...+. +.++|+|+||++|.+.+.. +.
T Consensus 139 i~~~l~~l~~~~~~~~~~~~g~~~~~~~ek-----------------~~~~~~l~~~~~~IlV~Tp~rL~~~~~~---l~ 198 (1176)
T PRK09401 139 VVEKLEKFGEKVGCGVKILYYHSSLKKKEK-----------------EEFLERLKEGDFDILVTTSQFLSKNFDE---LP 198 (1176)
T ss_pred HHHHHHHHhhhcCceEEEEEccCCcchhHH-----------------HHHHHHHhcCCCCEEEECHHHHHHHHHh---cc
Confidence 9999999999888888888776543 1111 12222344 4589999999999988763 55
Q ss_pred CCCccEEEEecchhhhh-----------HhHH-hHHHHHHHhhhcccccccccccccccccccccccccccccccCCCCC
Q 017196 195 LEHLCYLVVDETDRLLR-----------EAYQ-AWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDK 262 (375)
Q Consensus 195 ~~~~~~vIiDE~h~l~~-----------~~~~-~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (375)
...+++|||||||++++ .+|. ..+..++..++..... .+....+..+++. ....
T Consensus 199 ~~~~~~lVvDEaD~~L~~~k~id~~l~~lGF~~~~i~~i~~~i~~~~~~---------~~~~~~i~~l~~~-----i~~~ 264 (1176)
T PRK09401 199 KKKFDFVFVDDVDAVLKSSKNIDKLLYLLGFSEEDIEKAMELIRLKRKY---------EEIYEKIRELEEK-----IAEL 264 (1176)
T ss_pred ccccCEEEEEChHHhhhcccchhhHHHhCCCCHHHHHHHHHhccccccc---------chhhhHHHHHHHh-----hhhc
Confidence 66799999999999986 3453 5677777776541110 0000000000000 0000
Q ss_pred CCCceeEEEEEEecCCC-chhhhccccCCCeEEecCCccccCcccceeEEEeccCCCcHHHHHHHHHhcCCCeEEEEcCC
Q 017196 263 PYPRLVKMVLSATLTQD-PNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSS 341 (375)
Q Consensus 263 ~~~~~q~i~~SATl~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~k~lIF~~s 341 (375)
...+.|++++|||+++. ... ..+.++..+.+.... ....++.+.++.++ ++...+.++++... ..+||||++
T Consensus 265 ~~~~~q~ilfSAT~~~~~~~~---~l~~~ll~~~v~~~~-~~~rnI~~~yi~~~--~k~~~L~~ll~~l~-~~~LIFv~t 337 (1176)
T PRK09401 265 KDKKGVLVVSSATGRPRGNRV---KLFRELLGFEVGSPV-FYLRNIVDSYIVDE--DSVEKLVELVKRLG-DGGLIFVPS 337 (1176)
T ss_pred ccCCceEEEEeCCCCccchHH---HHhhccceEEecCcc-cccCCceEEEEEcc--cHHHHHHHHHHhcC-CCEEEEEec
Confidence 01157899999999764 332 122344444444433 23456777776655 67778888888765 479999999
Q ss_pred hhh---HHHHHHHHHHhcCCcceEEeccccc
Q 017196 342 VES---THRLCTLLNHFGELRIKIKEYSGLQ 369 (375)
Q Consensus 342 ~~~---a~~l~~~L~~~g~~~~~~~~lh~~~ 369 (375)
+.. |+.++++|+.. |+.+..+||+|
T Consensus 338 ~~~~~~ae~l~~~L~~~---gi~v~~~hg~l 365 (1176)
T PRK09401 338 DKGKEYAEELAEYLEDL---GINAELAISGF 365 (1176)
T ss_pred ccChHHHHHHHHHHHHC---CCcEEEEeCcH
Confidence 888 99999999955 49999999998
No 50
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=99.96 E-value=8.5e-29 Score=233.85 Aligned_cols=279 Identities=26% Similarity=0.263 Sum_probs=214.6
Q ss_pred cCCCCCCCCCCHHHHHHHHhCCCCCccHhhHHHHHHhhCCCCCCCCEEEECCCCCchHHHhHHHHHHHhhhcccCCceEE
Q 017196 26 DCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRAL 105 (375)
Q Consensus 26 ~~~~~~~~~l~~~i~~~l~~~g~~~~~~~Q~~~~~~~~~~~~~~~~~ii~a~TGsGKTl~~~l~il~~l~~~~~~~~~~l 105 (375)
..+++.++ +++.+.+.|+..|++.+.|+|.-|++. .+.+|.|.+|.++|+||||+...++-+.++...+ .+.|
T Consensus 193 r~~vdeLd-ipe~fk~~lk~~G~~eLlPVQ~laVe~---GLLeG~nllVVSaTasGKTLIgElAGi~~~l~~g---~Kml 265 (830)
T COG1202 193 RVPVDELD-IPEKFKRMLKREGIEELLPVQVLAVEA---GLLEGENLLVVSATASGKTLIGELAGIPRLLSGG---KKML 265 (830)
T ss_pred cccccccC-CcHHHHHHHHhcCcceecchhhhhhhh---ccccCCceEEEeccCCCcchHHHhhCcHHHHhCC---CeEE
Confidence 35566666 999999999999999999999999755 4469999999999999999999888888887743 3699
Q ss_pred EEcccHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcCCCcEEEeCcHHHHH
Q 017196 106 VVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMD 185 (375)
Q Consensus 106 il~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiV~Tp~~l~~ 185 (375)
+++|..+||+|-++.+++-....++.+..-.|.+-...... ...-......||||||++-+-.
T Consensus 266 fLvPLVALANQKy~dF~~rYs~LglkvairVG~srIk~~~~-----------------pv~~~t~~dADIIVGTYEGiD~ 328 (830)
T COG1202 266 FLVPLVALANQKYEDFKERYSKLGLKVAIRVGMSRIKTREE-----------------PVVVDTSPDADIIVGTYEGIDY 328 (830)
T ss_pred EEehhHHhhcchHHHHHHHhhcccceEEEEechhhhcccCC-----------------ccccCCCCCCcEEEeechhHHH
Confidence 99999999999999999777777888877777653322100 0000122357999999999888
Q ss_pred HHhhcCCCCCCCccEEEEecchhhhhHhHHhHHHHHHHhhhcccccccccccccccccccccccccccccccCCCCCCCC
Q 017196 186 HINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYP 265 (375)
Q Consensus 186 ~l~~~~~~~~~~~~~vIiDE~h~l~~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (375)
+++. + -++.++..|||||+|.+-+...+.-+..++..++...+
T Consensus 329 lLRt-g-~~lgdiGtVVIDEiHtL~deERG~RLdGLI~RLr~l~~----------------------------------- 371 (830)
T COG1202 329 LLRT-G-KDLGDIGTVVIDEIHTLEDEERGPRLDGLIGRLRYLFP----------------------------------- 371 (830)
T ss_pred HHHc-C-CcccccceEEeeeeeeccchhcccchhhHHHHHHHhCC-----------------------------------
Confidence 8877 3 67889999999999999776666666767666665332
Q ss_pred ceeEEEEEEecCCCchhhhccccCCCeEEecCCccccCcccceeEEEecc-CCCcHHHHHHHHHhc--------CCCeEE
Q 017196 266 RLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICE-SKLKPLYLVALLQSL--------GEEKCI 336 (375)
Q Consensus 266 ~~q~i~~SATl~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~~~~~~-~~~k~~~l~~ll~~~--------~~~k~l 336 (375)
..|++.+|||+ .+..++++.+....+... .. |-.+....+.+. +..|.+.+..+.+.. -.+++|
T Consensus 372 ~AQ~i~LSATV-gNp~elA~~l~a~lV~y~--~R----PVplErHlvf~~~e~eK~~ii~~L~k~E~~~~sskg~rGQtI 444 (830)
T COG1202 372 GAQFIYLSATV-GNPEELAKKLGAKLVLYD--ER----PVPLERHLVFARNESEKWDIIARLVKREFSTESSKGYRGQTI 444 (830)
T ss_pred CCeEEEEEeec-CChHHHHHHhCCeeEeec--CC----CCChhHeeeeecCchHHHHHHHHHHHHHHhhhhccCcCCceE
Confidence 56999999999 456777777654544432 22 333444444444 678888888888742 246999
Q ss_pred EEcCChhhHHHHHHHHHHhcCCcceEEeccccccccccC
Q 017196 337 VFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRR 375 (375)
Q Consensus 337 IF~~s~~~a~~l~~~L~~~g~~~~~~~~lh~~~~~~~R~ 375 (375)
||++|+..|+.++.+|. .+|+++..||+||+..+|+
T Consensus 445 VFT~SRrr~h~lA~~L~---~kG~~a~pYHaGL~y~eRk 480 (830)
T COG1202 445 VFTYSRRRCHELADALT---GKGLKAAPYHAGLPYKERK 480 (830)
T ss_pred EEecchhhHHHHHHHhh---cCCcccccccCCCcHHHHH
Confidence 99999999999999999 5569999999999999884
No 51
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=99.96 E-value=3.6e-28 Score=252.52 Aligned_cols=261 Identities=18% Similarity=0.187 Sum_probs=185.8
Q ss_pred CCHHHHHHH-HhCCCCCccHhhHHHHHHhhCCCCCC--CCEEEECCCCCchHHHhHHHHHHHhhhcccCCceEEEEcccH
Q 017196 35 LDPRLKVAL-QNMGISSLFPVQVAVWQETIGPGLFE--RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTR 111 (375)
Q Consensus 35 l~~~i~~~l-~~~g~~~~~~~Q~~~~~~~~~~~~~~--~~~ii~a~TGsGKTl~~~l~il~~l~~~~~~~~~~lil~Pt~ 111 (375)
.+..+.+.+ ..++| .|++.|.+|++.++..+.++ +|.+++|+||+|||.+|+++++..+..+ .+++|++||+
T Consensus 436 ~~~~~~~~~~~~~~f-~~T~~Q~~aI~~I~~d~~~~~~~d~Ll~adTGsGKT~val~a~l~al~~g----~qvlvLvPT~ 510 (926)
T TIGR00580 436 PDLEWQQEFEDSFPF-EETPDQLKAIEEIKADMESPRPMDRLVCGDVGFGKTEVAMRAAFKAVLDG----KQVAVLVPTT 510 (926)
T ss_pred CCHHHHHHHHHhCCC-CCCHHHHHHHHHHHhhhcccCcCCEEEECCCCccHHHHHHHHHHHHHHhC----CeEEEEeCcH
Confidence 445555555 45788 69999999999998655444 6899999999999999999999887654 4899999999
Q ss_pred HHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcC-CCcEEEeCcHHHHHHHhhc
Q 017196 112 DLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQS-AVDILVATPGRLMDHINAT 190 (375)
Q Consensus 112 ~L~~Q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~IiV~Tp~~l~~~l~~~ 190 (375)
+||+|+++.+++++..+++++..++|+.+..+.. ++.+.+.. .++|+||||.. +.
T Consensus 511 ~LA~Q~~~~f~~~~~~~~i~v~~Lsg~~~~~e~~------------------~~~~~l~~g~~dIVIGTp~l----l~-- 566 (926)
T TIGR00580 511 LLAQQHFETFKERFANFPVTIELLSRFRSAKEQN------------------EILKELASGKIDILIGTHKL----LQ-- 566 (926)
T ss_pred HHHHHHHHHHHHHhccCCcEEEEEeccccHHHHH------------------HHHHHHHcCCceEEEchHHH----hh--
Confidence 9999999999999888889999998876654432 22333443 58999999943 22
Q ss_pred CCCCCCCccEEEEecchhhhhHhHHhHHHHHHHhhhcccccccccccccccccccccccccccccccCCCCCCCCceeEE
Q 017196 191 RGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKM 270 (375)
Q Consensus 191 ~~~~~~~~~~vIiDE~h~l~~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i 270 (375)
+.+.+++++++||||+|++.... ...+..++. +.|++
T Consensus 567 ~~v~f~~L~llVIDEahrfgv~~-----~~~L~~~~~--------------------------------------~~~vL 603 (926)
T TIGR00580 567 KDVKFKDLGLLIIDEEQRFGVKQ-----KEKLKELRT--------------------------------------SVDVL 603 (926)
T ss_pred CCCCcccCCEEEeecccccchhH-----HHHHHhcCC--------------------------------------CCCEE
Confidence 34678899999999999873322 122222222 56899
Q ss_pred EEEEecCCCchhhhccccCCCeEEecCCccccCcccceeEEEeccCCCcHHHHHH-HHHh-cCCCeEEEEcCChhhHHHH
Q 017196 271 VLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVA-LLQS-LGEEKCIVFTSSVESTHRL 348 (375)
Q Consensus 271 ~~SATl~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~-ll~~-~~~~k~lIF~~s~~~a~~l 348 (375)
+||||+++...........++..+...... ...++.++.... . ..+.. +.+. ..+++++|||+++++++.+
T Consensus 604 ~~SATpiprtl~~~l~g~~d~s~I~~~p~~---R~~V~t~v~~~~--~--~~i~~~i~~el~~g~qv~if~n~i~~~e~l 676 (926)
T TIGR00580 604 TLSATPIPRTLHMSMSGIRDLSIIATPPED---RLPVRTFVMEYD--P--ELVREAIRRELLRGGQVFYVHNRIESIEKL 676 (926)
T ss_pred EEecCCCHHHHHHHHhcCCCcEEEecCCCC---ccceEEEEEecC--H--HHHHHHHHHHHHcCCeEEEEECCcHHHHHH
Confidence 999998765555554555566555543322 123444433221 1 22222 2222 2467999999999999999
Q ss_pred HHHHHHhcCCcceEEeccccccccccC
Q 017196 349 CTLLNHFGELRIKIKEYSGLQRQSVRR 375 (375)
Q Consensus 349 ~~~L~~~g~~~~~~~~lh~~~~~~~R~ 375 (375)
++.|+... .++.+..+||+|++.+|.
T Consensus 677 ~~~L~~~~-p~~~v~~lHG~m~~~eRe 702 (926)
T TIGR00580 677 ATQLRELV-PEARIAIAHGQMTENELE 702 (926)
T ss_pred HHHHHHhC-CCCeEEEecCCCCHHHHH
Confidence 99999642 358899999999998873
No 52
>COG1204 Superfamily II helicase [General function prediction only]
Probab=99.96 E-value=3.4e-28 Score=247.94 Aligned_cols=251 Identities=24% Similarity=0.274 Sum_probs=184.5
Q ss_pred CCHHHHHHHHhCCCCCccHhhHHHHHHhhCCCCCCCCEEEECCCCCchHHHhHHHHHHHhhhcccCCceEEEEcccHHHH
Q 017196 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLA 114 (375)
Q Consensus 35 l~~~i~~~l~~~g~~~~~~~Q~~~~~~~~~~~~~~~~~ii~a~TGsGKTl~~~l~il~~l~~~~~~~~~~lil~Pt~~L~ 114 (375)
+++.+.+.+...|+.++++.|+.++...+. +++|++|++|||+|||+.+++.+++.+.+. +.+++|++|+++||
T Consensus 16 ~~~~v~~i~~~~~~~el~~~qq~av~~~~~---~~~N~li~aPTgsGKTlIA~lai~~~l~~~---~~k~vYivPlkALa 89 (766)
T COG1204 16 LDDRVLEILKGDGIDELFNPQQEAVEKGLL---SDENVLISAPTGSGKTLIALLAILSTLLEG---GGKVVYIVPLKALA 89 (766)
T ss_pred ccHHHHHHhccCChHHhhHHHHHHhhcccc---CCCcEEEEcCCCCchHHHHHHHHHHHHHhc---CCcEEEEeChHHHH
Confidence 788888889989999999999999755543 689999999999999999999999999876 23799999999999
Q ss_pred HHHHHHHHHhccccCceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcCCCcEEEeCcHHHHHHHhhcCCCC
Q 017196 115 LQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFT 194 (375)
Q Consensus 115 ~Q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiV~Tp~~l~~~l~~~~~~~ 194 (375)
+|.++.++ .+..+|++|...+|+....... -.+++|+|+||+++..++++.. .+
T Consensus 90 ~Ek~~~~~-~~~~~GirV~~~TgD~~~~~~~------------------------l~~~~ViVtT~EK~Dsl~R~~~-~~ 143 (766)
T COG1204 90 EEKYEEFS-RLEELGIRVGISTGDYDLDDER------------------------LARYDVIVTTPEKLDSLTRKRP-SW 143 (766)
T ss_pred HHHHHHhh-hHHhcCCEEEEecCCcccchhh------------------------hccCCEEEEchHHhhHhhhcCc-ch
Confidence 99999999 5556699999999997644431 2567999999999999988844 58
Q ss_pred CCCccEEEEecchhhhhHhHHhHHHHHHHhhhcccccccccccccccccccccccccccccccCCCCCCCCceeEEEEEE
Q 017196 195 LEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSA 274 (375)
Q Consensus 195 ~~~~~~vIiDE~h~l~~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SA 274 (375)
...+++|||||+|.+.+...++.++.+....+.... .+|++++||
T Consensus 144 ~~~V~lvViDEiH~l~d~~RG~~lE~iv~r~~~~~~-----------------------------------~~rivgLSA 188 (766)
T COG1204 144 IEEVDLVVIDEIHLLGDRTRGPVLESIVARMRRLNE-----------------------------------LIRIVGLSA 188 (766)
T ss_pred hhcccEEEEeeeeecCCcccCceehhHHHHHHhhCc-----------------------------------ceEEEEEee
Confidence 899999999999988777667888888888766432 478999999
Q ss_pred ecCCCchhhhccccCCCeEEecCCccccCcccceeEEEeccCCC------cHHHHHH-HHHhc-CCCeEEEEcCChhhHH
Q 017196 275 TLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKL------KPLYLVA-LLQSL-GEEKCIVFTSSVESTH 346 (375)
Q Consensus 275 Tl~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~------k~~~l~~-ll~~~-~~~k~lIF~~s~~~a~ 346 (375)
|+|+ ..+++.+.-.++......+............+....... ..+.... .+... .++++||||+|+..+.
T Consensus 189 TlpN-~~evA~wL~a~~~~~~~rp~~l~~~v~~~~~~~~~~~~~k~~~~~~~~~~~~~v~~~~~~~~qvLvFv~sR~~a~ 267 (766)
T COG1204 189 TLPN-AEEVADWLNAKLVESDWRPVPLRRGVPYVGAFLGADGKKKTWPLLIDNLALELVLESLAEGGQVLVFVHSRKEAE 267 (766)
T ss_pred ecCC-HHHHHHHhCCcccccCCCCcccccCCccceEEEEecCccccccccchHHHHHHHHHHHhcCCeEEEEEecCchHH
Confidence 9975 444444333333211111111000111122222222222 2233333 33333 5679999999999999
Q ss_pred HHHHHHH
Q 017196 347 RLCTLLN 353 (375)
Q Consensus 347 ~l~~~L~ 353 (375)
..|+.|.
T Consensus 268 ~~A~~l~ 274 (766)
T COG1204 268 KTAKKLR 274 (766)
T ss_pred HHHHHHH
Confidence 9999998
No 53
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=99.96 E-value=3.1e-27 Score=251.26 Aligned_cols=279 Identities=18% Similarity=0.223 Sum_probs=183.9
Q ss_pred HHHHHHHHhCCCCCccHhhHHHHHHhhCCCCCCCCEEEECCCCCchHHHhHHHHHHHhhhcccCCceEEEEcccHHHHHH
Q 017196 37 PRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQ 116 (375)
Q Consensus 37 ~~i~~~l~~~g~~~~~~~Q~~~~~~~~~~~~~~~~~ii~a~TGsGKTl~~~l~il~~l~~~~~~~~~~lil~Pt~~L~~Q 116 (375)
.++.+.+.+.....|+++|+.+++.++ .|+|++++||||+|||. |.+++...+.. .+++++||+||++||.|
T Consensus 65 ~~f~~~f~~~~g~~p~~iQ~~~i~~il----~G~d~vi~ApTGsGKT~-f~l~~~~~l~~---~g~~vLIL~PTreLa~Q 136 (1171)
T TIGR01054 65 KEFEEFFKKAVGSEPWSIQKMWAKRVL----RGDSFAIIAPTGVGKTT-FGLAMSLFLAK---KGKRCYIILPTTLLVIQ 136 (1171)
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHh----CCCeEEEECCCCCCHHH-HHHHHHHHHHh---cCCeEEEEeCHHHHHHH
Confidence 456666766444589999999988777 69999999999999997 66777665543 24689999999999999
Q ss_pred HHHHHHHhccccCceEE---EeecCCchHHHHHHHhhcCccccCccCCchhHHHhhc-CCCcEEEeCcHHHHHHHhhcCC
Q 017196 117 VKDVFAAIAPAVGLSVG---LAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQ-SAVDILVATPGRLMDHINATRG 192 (375)
Q Consensus 117 ~~~~~~~~~~~~~~~v~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~IiV~Tp~~l~~~l~~~~~ 192 (375)
+++.++.++...++.+. .++|+.+...+.. ....+. ++++|+||||++|.+.+..
T Consensus 137 i~~~l~~l~~~~~i~~~~i~~~~Gg~~~~e~~~------------------~~~~l~~~~~dIlV~Tp~rL~~~~~~--- 195 (1171)
T TIGR01054 137 VAEKISSLAEKAGVGTVNIGAYHSRLPTKEKKE------------------FMERIENGDFDILITTTMFLSKNYDE--- 195 (1171)
T ss_pred HHHHHHHHHHhcCCceeeeeeecCCCCHHHHHH------------------HHHHHhcCCCCEEEECHHHHHHHHHH---
Confidence 99999999887766543 4677766544321 122333 3589999999999888765
Q ss_pred CCCCCccEEEEecchhhhhH-----------hHHh-HHHHHHHhhhcccccccccccccccccccccccccccccccCCC
Q 017196 193 FTLEHLCYLVVDETDRLLRE-----------AYQA-WLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFK 260 (375)
Q Consensus 193 ~~~~~~~~vIiDE~h~l~~~-----------~~~~-~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (375)
+.. +++++|+||||+|++. +|.. .+..+++.++..... +.....+.... ...
T Consensus 196 l~~-~~~~iVvDEaD~~L~~~k~vd~il~llGF~~e~i~~il~~~~~~~~~----------~~~~~~~~~~~-----~~~ 259 (1171)
T TIGR01054 196 LGP-KFDFIFVDDVDALLKASKNVDKLLKLLGFSEELIEKAWKLIRLRLKL----------YRALHAKKRLE-----LLE 259 (1171)
T ss_pred hcC-CCCEEEEeChHhhhhccccHHHHHHHcCCCHHHHHHHHHHhhhcccc----------chHHHHHHHHH-----HHH
Confidence 222 8999999999999873 3433 344444433210000 00000000000 000
Q ss_pred CCCCCce--eEEEEEEe-cCCCchhhhccccCCCeEEecCCccccCcccceeEEEeccCCCcHHHHHHHHHhcCCCeEEE
Q 017196 261 DKPYPRL--VKMVLSAT-LTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIV 337 (375)
Q Consensus 261 ~~~~~~~--q~i~~SAT-l~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~k~lI 337 (375)
. ...+. +++++||| .|..... .++.+...+.++... ....++.+.+..... +...+.++++... .++||
T Consensus 260 ~-~~~~~q~~li~~SAT~~p~~~~~---~l~r~ll~~~v~~~~-~~~r~I~~~~~~~~~--~~~~L~~ll~~l~-~~~IV 331 (1171)
T TIGR01054 260 A-IPGKKRGCLIVSSATGRPRGKRA---KLFRELLGFEVGGGS-DTLRNVVDVYVEDED--LKETLLEIVKKLG-TGGIV 331 (1171)
T ss_pred h-hhhccCcEEEEEeCCCCccccHH---HHcccccceEecCcc-ccccceEEEEEeccc--HHHHHHHHHHHcC-CCEEE
Confidence 0 00123 36778999 5544332 223344445555443 234567777654443 3456778887764 57999
Q ss_pred EcCCh---hhHHHHHHHHHHhcCCcceEEeccccccc
Q 017196 338 FTSSV---ESTHRLCTLLNHFGELRIKIKEYSGLQRQ 371 (375)
Q Consensus 338 F~~s~---~~a~~l~~~L~~~g~~~~~~~~lh~~~~~ 371 (375)
||+++ +.|+.+++.|+.. |+++..+||+|++
T Consensus 332 Fv~t~~~~~~a~~l~~~L~~~---g~~a~~lhg~~~~ 365 (1171)
T TIGR01054 332 YVSIDYGKEKAEEIAEFLENH---GVKAVAYHATKPK 365 (1171)
T ss_pred EEeccccHHHHHHHHHHHHhC---CceEEEEeCCCCH
Confidence 99999 9999999999954 5999999999963
No 54
>PRK10689 transcription-repair coupling factor; Provisional
Probab=99.96 E-value=4.9e-27 Score=248.93 Aligned_cols=260 Identities=18% Similarity=0.168 Sum_probs=187.6
Q ss_pred HHHHHHHHhCCCCCccHhhHHHHHHhhCCCCCC--CCEEEECCCCCchHHHhHHHHHHHhhhcccCCceEEEEcccHHHH
Q 017196 37 PRLKVALQNMGISSLFPVQVAVWQETIGPGLFE--RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLA 114 (375)
Q Consensus 37 ~~i~~~l~~~g~~~~~~~Q~~~~~~~~~~~~~~--~~~ii~a~TGsGKTl~~~l~il~~l~~~~~~~~~~lil~Pt~~L~ 114 (375)
++..+....++| .|++.|.+|++.++..+.++ +|++++++||+|||.+|+.+++..+.. +.+++|++||++||
T Consensus 588 ~~~~~~~~~~~~-~~T~~Q~~aI~~il~d~~~~~~~d~Ll~a~TGsGKT~val~aa~~~~~~----g~qvlvLvPT~eLA 662 (1147)
T PRK10689 588 EQYQLFCDSFPF-ETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVEN----HKQVAVLVPTTLLA 662 (1147)
T ss_pred HHHHHHHHhCCC-CCCHHHHHHHHHHHHHhhcCCCCCEEEEcCCCcCHHHHHHHHHHHHHHc----CCeEEEEeCcHHHH
Confidence 455555677898 89999999999988644333 799999999999999998888776543 45899999999999
Q ss_pred HHHHHHHHHhccccCceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhc-CCCcEEEeCcHHHHHHHhhcCCC
Q 017196 115 LQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQ-SAVDILVATPGRLMDHINATRGF 193 (375)
Q Consensus 115 ~Q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~IiV~Tp~~l~~~l~~~~~~ 193 (375)
.|+++.+++.+..+++++..++|+.+...+.. .++.+. ++++|+||||+.+ . ..+
T Consensus 663 ~Q~~~~f~~~~~~~~v~i~~l~g~~s~~e~~~------------------il~~l~~g~~dIVVgTp~lL----~--~~v 718 (1147)
T PRK10689 663 QQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQ------------------ILAEAAEGKIDILIGTHKLL----Q--SDV 718 (1147)
T ss_pred HHHHHHHHHhhccCCceEEEEECCCCHHHHHH------------------HHHHHHhCCCCEEEECHHHH----h--CCC
Confidence 99999999888777889988888877655532 222333 4589999999643 2 346
Q ss_pred CCCCccEEEEecchhhhhHhHHhHHHHHHHhhhcccccccccccccccccccccccccccccccCCCCCCCCceeEEEEE
Q 017196 194 TLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLS 273 (375)
Q Consensus 194 ~~~~~~~vIiDE~h~l~~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~S 273 (375)
.++++++|||||+|++... . ...+..++. +.|+++||
T Consensus 719 ~~~~L~lLVIDEahrfG~~-~----~e~lk~l~~--------------------------------------~~qvLl~S 755 (1147)
T PRK10689 719 KWKDLGLLIVDEEHRFGVR-H----KERIKAMRA--------------------------------------DVDILTLT 755 (1147)
T ss_pred CHhhCCEEEEechhhcchh-H----HHHHHhcCC--------------------------------------CCcEEEEc
Confidence 6789999999999997321 1 122223322 67899999
Q ss_pred EecCCCchhhhccccCCCeEEecCCccccCcccceeEEEeccCC-CcHHHHHHHHHhcCCCeEEEEcCChhhHHHHHHHH
Q 017196 274 ATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESK-LKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLL 352 (375)
Q Consensus 274 ATl~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~-~k~~~l~~ll~~~~~~k~lIF~~s~~~a~~l~~~L 352 (375)
||+++....+...++.++..+...... ...++++....... .+...+.++. .+++++||||++++++.+++.|
T Consensus 756 ATpiprtl~l~~~gl~d~~~I~~~p~~---r~~v~~~~~~~~~~~~k~~il~el~---r~gqv~vf~n~i~~ie~la~~L 829 (1147)
T PRK10689 756 ATPIPRTLNMAMSGMRDLSIIATPPAR---RLAVKTFVREYDSLVVREAILREIL---RGGQVYYLYNDVENIQKAAERL 829 (1147)
T ss_pred CCCCHHHHHHHHhhCCCcEEEecCCCC---CCCceEEEEecCcHHHHHHHHHHHh---cCCeEEEEECCHHHHHHHHHHH
Confidence 998877677776777788777654332 12344443322211 1222222222 3568999999999999999999
Q ss_pred HHhcCCcceEEeccccccccccC
Q 017196 353 NHFGELRIKIKEYSGLQRQSVRR 375 (375)
Q Consensus 353 ~~~g~~~~~~~~lh~~~~~~~R~ 375 (375)
+... .+..+..+||+|++++|.
T Consensus 830 ~~~~-p~~~v~~lHG~m~q~eRe 851 (1147)
T PRK10689 830 AELV-PEARIAIGHGQMRERELE 851 (1147)
T ss_pred HHhC-CCCcEEEEeCCCCHHHHH
Confidence 8652 247899999999998873
No 55
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=99.95 E-value=1.4e-26 Score=236.88 Aligned_cols=260 Identities=17% Similarity=0.174 Sum_probs=177.1
Q ss_pred HHHHHHHHhCCCCCccHhhHHHHHHhhCCCCCC--CCEEEECCCCCchHHHhHHHHHHHhhhcccCCceEEEEcccHHHH
Q 017196 37 PRLKVALQNMGISSLFPVQVAVWQETIGPGLFE--RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLA 114 (375)
Q Consensus 37 ~~i~~~l~~~g~~~~~~~Q~~~~~~~~~~~~~~--~~~ii~a~TGsGKTl~~~l~il~~l~~~~~~~~~~lil~Pt~~L~ 114 (375)
..+.+....++| +|+++|.+|++.+...+..+ ++.+++||||||||++|++|++..+.. +.+++|++||++||
T Consensus 249 ~~~~~~~~~l~f-~lt~~Q~~ai~~I~~d~~~~~~~~~Ll~~~TGSGKT~va~~~il~~~~~----g~q~lilaPT~~LA 323 (681)
T PRK10917 249 ELLKKFLASLPF-ELTGAQKRVVAEILADLASPKPMNRLLQGDVGSGKTVVAALAALAAIEA----GYQAALMAPTEILA 323 (681)
T ss_pred HHHHHHHHhCCC-CCCHHHHHHHHHHHHhhhccCCceEEEECCCCCcHHHHHHHHHHHHHHc----CCeEEEEeccHHHH
Confidence 334445566888 79999999999988655433 589999999999999999999988754 35799999999999
Q ss_pred HHHHHHHHHhccccCceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcC-CCcEEEeCcHHHHHHHhhcCCC
Q 017196 115 LQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQS-AVDILVATPGRLMDHINATRGF 193 (375)
Q Consensus 115 ~Q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~IiV~Tp~~l~~~l~~~~~~ 193 (375)
.|+++.+++++...++++..++|+.+...... +...+.. .++|+||||+.+.+ ..
T Consensus 324 ~Q~~~~l~~l~~~~~i~v~ll~G~~~~~~r~~------------------~~~~l~~g~~~IvVgT~~ll~~------~v 379 (681)
T PRK10917 324 EQHYENLKKLLEPLGIRVALLTGSLKGKERRE------------------ILEAIASGEADIVIGTHALIQD------DV 379 (681)
T ss_pred HHHHHHHHHHHhhcCcEEEEEcCCCCHHHHHH------------------HHHHHhCCCCCEEEchHHHhcc------cc
Confidence 99999999999988999999999987655422 2233444 59999999986632 35
Q ss_pred CCCCccEEEEecchhhhhHhHHhHHHHHHHhhhcccccccccccccccccccccccccccccccCCCCCCCCceeEEEEE
Q 017196 194 TLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLS 273 (375)
Q Consensus 194 ~~~~~~~vIiDE~h~l~~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~S 273 (375)
.+++++++||||+|++...... .+.. ... +.++++||
T Consensus 380 ~~~~l~lvVIDE~Hrfg~~qr~----~l~~-~~~--------------------------------------~~~iL~~S 416 (681)
T PRK10917 380 EFHNLGLVIIDEQHRFGVEQRL----ALRE-KGE--------------------------------------NPHVLVMT 416 (681)
T ss_pred hhcccceEEEechhhhhHHHHH----HHHh-cCC--------------------------------------CCCEEEEe
Confidence 6788999999999987433321 1111 111 35689999
Q ss_pred EecCCCchhhhccccCCCeEEecCCccccCcccceeEEEeccCCCcHHHHHHHHHh--cCCCeEEEEcCChh--------
Q 017196 274 ATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQS--LGEEKCIVFTSSVE-------- 343 (375)
Q Consensus 274 ATl~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~--~~~~k~lIF~~s~~-------- 343 (375)
||+.+....+......+...+...... ...+..... . ..+...+.+.+.. ..+++++|||+.++
T Consensus 417 ATp~prtl~~~~~g~~~~s~i~~~p~~---r~~i~~~~~--~-~~~~~~~~~~i~~~~~~g~q~~v~~~~ie~s~~l~~~ 490 (681)
T PRK10917 417 ATPIPRTLAMTAYGDLDVSVIDELPPG---RKPITTVVI--P-DSRRDEVYERIREEIAKGRQAYVVCPLIEESEKLDLQ 490 (681)
T ss_pred CCCCHHHHHHHHcCCCceEEEecCCCC---CCCcEEEEe--C-cccHHHHHHHHHHHHHcCCcEEEEEcccccccchhHH
Confidence 997654333322211122222111110 122333322 2 2223334344432 24679999999654
Q ss_pred hHHHHHHHHHHhcCCcceEEeccccccccccC
Q 017196 344 STHRLCTLLNHFGELRIKIKEYSGLQRQSVRR 375 (375)
Q Consensus 344 ~a~~l~~~L~~~g~~~~~~~~lh~~~~~~~R~ 375 (375)
.+..+++.|.... .++.+..+||+|++++|+
T Consensus 491 ~~~~~~~~L~~~~-~~~~v~~lHG~m~~~eR~ 521 (681)
T PRK10917 491 SAEETYEELQEAF-PELRVGLLHGRMKPAEKD 521 (681)
T ss_pred HHHHHHHHHHHHC-CCCcEEEEeCCCCHHHHH
Confidence 4667788887642 237899999999999884
No 56
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=99.95 E-value=1.7e-26 Score=238.61 Aligned_cols=279 Identities=25% Similarity=0.282 Sum_probs=202.4
Q ss_pred CCHHHHHHHHhCCCCCccHhhHHHHHHhhCCCCCCCCEEEECCCCCchHHHhHHHHHHHhhhcccCCceEEEEcccHHHH
Q 017196 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLA 114 (375)
Q Consensus 35 l~~~i~~~l~~~g~~~~~~~Q~~~~~~~~~~~~~~~~~ii~a~TGsGKTl~~~l~il~~l~~~~~~~~~~lil~Pt~~L~ 114 (375)
.+..+..+|.+.|+..|++||.+|++.+. +|+|++|+.+||||||++|++|+++.+.+... .++|+|.||++|+
T Consensus 55 ~~~~l~~~l~~~g~~~lY~HQ~~A~~~~~----~G~~vvVtTgTgSGKTe~FllPIld~~l~~~~--a~AL~lYPtnALa 128 (851)
T COG1205 55 RDESLKSALVKAGIERLYSHQVDALRLIR----EGRNVVVTTGTGSGKTESFLLPILDHLLRDPS--ARALLLYPTNALA 128 (851)
T ss_pred hhhHHHHHHHHhccccccHHHHHHHHHHH----CCCCEEEECCCCCchhHHHHHHHHHHHhhCcC--ccEEEEechhhhH
Confidence 45567888888999999999999998776 79999999999999999999999999999743 4899999999999
Q ss_pred HHHHHHHHHhccccC--ceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcCCCcEEEeCcHHHHHHHhhcCC
Q 017196 115 LQVKDVFAAIAPAVG--LSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRG 192 (375)
Q Consensus 115 ~Q~~~~~~~~~~~~~--~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiV~Tp~~l~~~l~~~~~ 192 (375)
+.+...++++....+ +.+..++|+....... ....+.++|++|||++|..++.+...
T Consensus 129 ~DQ~~rl~~~~~~~~~~v~~~~y~Gdt~~~~r~---------------------~~~~~pp~IllTNpdMLh~~llr~~~ 187 (851)
T COG1205 129 NDQAERLRELISDLPGKVTFGRYTGDTPPEERR---------------------AIIRNPPDILLTNPDMLHYLLLRNHD 187 (851)
T ss_pred hhHHHHHHHHHHhCCCcceeeeecCCCChHHHH---------------------HHHhCCCCEEEeCHHHHHHHhccCcc
Confidence 999999999988877 8888888887655442 24556789999999999885544222
Q ss_pred ---CCCCCccEEEEecchhhhhHhHHhHHHHHHHhhhcccccccccccccccccccccccccccccccCCCCCCCCceeE
Q 017196 193 ---FTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVK 269 (375)
Q Consensus 193 ---~~~~~~~~vIiDE~h~l~~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~ 269 (375)
..++++++||+||+|.. ...++.++-.++..+...-.. .+.+.|+
T Consensus 188 ~~~~~~~~Lk~lVvDElHtY-rGv~GS~vA~llRRL~~~~~~-------------------------------~~~~~q~ 235 (851)
T COG1205 188 AWLWLLRNLKYLVVDELHTY-RGVQGSEVALLLRRLLRRLRR-------------------------------YGSPLQI 235 (851)
T ss_pred hHHHHHhcCcEEEEecceec-cccchhHHHHHHHHHHHHHhc-------------------------------cCCCceE
Confidence 23788999999999955 555555555555444432110 1127899
Q ss_pred EEEEEecCCCchhhhccccCCCeEEecCCccccCcccceeEEEecc---------CCCcHHHHHHHHHhc--CCCeEEEE
Q 017196 270 MVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICE---------SKLKPLYLVALLQSL--GEEKCIVF 338 (375)
Q Consensus 270 i~~SATl~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~~~~~~---------~~~k~~~l~~ll~~~--~~~k~lIF 338 (375)
+..|||+.+ ..+++..+........+.... .+...+++....+ ...+...+..++... .+-++|+|
T Consensus 236 i~~SAT~~n-p~e~~~~l~~~~f~~~v~~~g--~~~~~~~~~~~~p~~~~~~~~~r~s~~~~~~~~~~~~~~~~~~tL~F 312 (851)
T COG1205 236 ICTSATLAN-PGEFAEELFGRDFEVPVDEDG--SPRGLRYFVRREPPIRELAESIRRSALAELATLAALLVRNGIQTLVF 312 (851)
T ss_pred EEEeccccC-hHHHHHHhcCCcceeeccCCC--CCCCceEEEEeCCcchhhhhhcccchHHHHHHHHHHHHHcCceEEEE
Confidence 999999954 455555555444444233322 2334444444433 224444445555443 56699999
Q ss_pred cCChhhHHHHH----HHHHHhc-CCcceEEeccccccccccC
Q 017196 339 TSSVESTHRLC----TLLNHFG-ELRIKIKEYSGLQRQSVRR 375 (375)
Q Consensus 339 ~~s~~~a~~l~----~~L~~~g-~~~~~~~~lh~~~~~~~R~ 375 (375)
+.++..++.++ ..+...+ .....+..++|+|...+|+
T Consensus 313 ~~sr~~~e~~~~~~~~~~~~~~~~l~~~v~~~~~~~~~~er~ 354 (851)
T COG1205 313 FRSRKQVELLYLSPRRRLVREGGKLLDAVSTYRAGLHREERR 354 (851)
T ss_pred EehhhhhhhhhhchhHHHhhcchhhhhheeeccccCCHHHHH
Confidence 99999999997 3443333 4446799999999999884
No 57
>PRK14701 reverse gyrase; Provisional
Probab=99.95 E-value=1.2e-26 Score=251.58 Aligned_cols=281 Identities=16% Similarity=0.177 Sum_probs=186.5
Q ss_pred HHHHHHHh-CCCCCccHhhHHHHHHhhCCCCCCCCEEEECCCCCchHHHhHHHHHHHhhhcccCCceEEEEcccHHHHHH
Q 017196 38 RLKVALQN-MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQ 116 (375)
Q Consensus 38 ~i~~~l~~-~g~~~~~~~Q~~~~~~~~~~~~~~~~~ii~a~TGsGKTl~~~l~il~~l~~~~~~~~~~lil~Pt~~L~~Q 116 (375)
++.+.|.+ +|| +|+++|..+++.++ .|+|+++.||||+|||++++++++.... ++.+++||+||++|+.|
T Consensus 67 ~~~~~f~~~~G~-~pt~iQ~~~i~~il----~G~d~li~APTGsGKTl~~~~~al~~~~----~g~~aLVl~PTreLa~Q 137 (1638)
T PRK14701 67 EFEEFFEKITGF-EFWSIQKTWAKRIL----RGKSFSIVAPTGMGKSTFGAFIALFLAL----KGKKCYIILPTTLLVKQ 137 (1638)
T ss_pred HHHHHHHHhhCC-CCCHHHHHHHHHHH----cCCCEEEEEcCCCCHHHHHHHHHHHHHh----cCCeEEEEECHHHHHHH
Confidence 45556665 899 79999999988887 6899999999999999966665554322 34589999999999999
Q ss_pred HHHHHHHhcccc--CceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcC-CCcEEEeCcHHHHHHHhhcCCC
Q 017196 117 VKDVFAAIAPAV--GLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQS-AVDILVATPGRLMDHINATRGF 193 (375)
Q Consensus 117 ~~~~~~~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~IiV~Tp~~l~~~l~~~~~~ 193 (375)
++..++.++... ++++..++|+.+...+.+ .++.+.. .++|+|+||++|.+.+...
T Consensus 138 i~~~l~~l~~~~~~~v~v~~~~g~~s~~e~~~------------------~~~~l~~g~~dILV~TPgrL~~~~~~l--- 196 (1638)
T PRK14701 138 TVEKIESFCEKANLDVRLVYYHSNLRKKEKEE------------------FLERIENGDFDILVTTAQFLARNFPEM--- 196 (1638)
T ss_pred HHHHHHHHHhhcCCceeEEEEeCCCCHHHHHH------------------HHHHHhcCCCCEEEECCchhHHhHHHH---
Confidence 999999988765 467778888877655422 2223444 4899999999998876542
Q ss_pred CCCCccEEEEecchhhhhH-----------hHHhHHH-HHHHhhhcccccccccccccccccccccccccccccccCCCC
Q 017196 194 TLEHLCYLVVDETDRLLRE-----------AYQAWLP-TVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKD 261 (375)
Q Consensus 194 ~~~~~~~vIiDE~h~l~~~-----------~~~~~l~-~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (375)
...+++++||||||+|+.+ +|...+. .+++.++...... ....+..+..+.... ..
T Consensus 197 ~~~~i~~iVVDEAD~ml~~~knid~~L~llGF~~e~~~~~~~il~~~~~~~-------~~~~~~~~~~l~~~~-----~~ 264 (1638)
T PRK14701 197 KHLKFDFIFVDDVDAFLKASKNIDRSLQLLGFYEEIIEKAWKIIYLKKQGN-------IEDAMEKREILNKEI-----EK 264 (1638)
T ss_pred hhCCCCEEEEECceeccccccccchhhhcCCChHHHHHHHHHhhhcccccc-------cchhhhhhhhhhhhh-----hh
Confidence 2267899999999999863 4544443 2333322100000 000000000000000 00
Q ss_pred CCCCcee-EEEEEEecCCCchhhhccccCCCeEEecCCccccCcccceeEEEeccCCCcHHHHHHHHHhcCCCeEEEEcC
Q 017196 262 KPYPRLV-KMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTS 340 (375)
Q Consensus 262 ~~~~~~q-~i~~SATl~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~k~lIF~~ 340 (375)
.+ ...| .+++|||++..-. ....+.++..+.++.... ...++.+.++.+....+ ..+.++++.. +..+||||+
T Consensus 265 ~~-~~~~~ll~~SAT~~~r~~--~~~l~~~~l~f~v~~~~~-~lr~i~~~yi~~~~~~k-~~L~~ll~~~-g~~gIVF~~ 338 (1638)
T PRK14701 265 IG-NKIGCLIVASATGKAKGD--RVKLYRELLGFEVGSGRS-ALRNIVDVYLNPEKIIK-EHVRELLKKL-GKGGLIFVP 338 (1638)
T ss_pred cC-CCccEEEEEecCCCchhH--HHHHhhcCeEEEecCCCC-CCCCcEEEEEECCHHHH-HHHHHHHHhC-CCCeEEEEe
Confidence 01 1234 6789999985311 112335666666665543 33567777766654444 5677888776 468999999
Q ss_pred Chhh---HHHHHHHHHHhcCCcceEEeccccc
Q 017196 341 SVES---THRLCTLLNHFGELRIKIKEYSGLQ 369 (375)
Q Consensus 341 s~~~---a~~l~~~L~~~g~~~~~~~~lh~~~ 369 (375)
+++. |+.+++.|... |+++..+||+.
T Consensus 339 t~~~~e~ae~la~~L~~~---Gi~a~~~h~~R 367 (1638)
T PRK14701 339 IDEGAEKAEEIEKYLLED---GFKIELVSAKN 367 (1638)
T ss_pred ccccchHHHHHHHHHHHC---CCeEEEecchH
Confidence 9876 58999999954 59999999973
No 58
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=99.95 E-value=1.3e-26 Score=247.36 Aligned_cols=243 Identities=21% Similarity=0.231 Sum_probs=162.6
Q ss_pred EECCCCCchHHHhHHHHHHHhhhcc---------cCCceEEEEcccHHHHHHHHHHHHHhc------------cccCceE
Q 017196 74 INSPTGSGKTLSYALPIVQTLSNRA---------VRCLRALVVLPTRDLALQVKDVFAAIA------------PAVGLSV 132 (375)
Q Consensus 74 i~a~TGsGKTl~~~l~il~~l~~~~---------~~~~~~lil~Pt~~L~~Q~~~~~~~~~------------~~~~~~v 132 (375)
|+||||||||++|.+|+++.+.... .++.++|||+|+++|+.|+++.++... ...++++
T Consensus 1 V~APTGSGKTLAA~LpaL~~Ll~~~~~~~~~~~~~~~~raLYISPLKALa~Dv~~~L~~pl~~i~~~~~~~g~~~~~i~V 80 (1490)
T PRK09751 1 VIAPTGSGKTLAAFLYALDRLFREGGEDTREAHKRKTSRILYISPIKALGTDVQRNLQIPLKGIADERRRRGETEVNLRV 80 (1490)
T ss_pred CcCCCCcHHHHHHHHHHHHHHHhcccccccccccCCCCEEEEEeChHHHHHHHHHHHHHHHHhhhhhhhhcccccCceEE
Confidence 5799999999999999999987532 235789999999999999999987521 1237899
Q ss_pred EEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcCCCcEEEeCcHHHHHHHhhcCCCCCCCccEEEEecchhhhhH
Q 017196 133 GLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLRE 212 (375)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiV~Tp~~l~~~l~~~~~~~~~~~~~vIiDE~h~l~~~ 212 (375)
...+|+.+..+..+ .+...++|+|+||++|..++.+.....++++++|||||+|.+.+.
T Consensus 81 ~vrtGDt~~~eR~r---------------------ll~~ppdILVTTPEsL~~LLtsk~r~~L~~Vr~VIVDE~H~L~g~ 139 (1490)
T PRK09751 81 GIRTGDTPAQERSK---------------------LTRNPPDILITTPESLYLMLTSRARETLRGVETVIIDEVHAVAGS 139 (1490)
T ss_pred EEEECCCCHHHHHH---------------------HhcCCCCEEEecHHHHHHHHhhhhhhhhccCCEEEEecHHHhccc
Confidence 99999987655532 345578999999999998887533346899999999999999865
Q ss_pred hHHhHHHHHHHhhhcccccccccccccccccccccccccccccccCCCCCCCCceeEEEEEEecCCCchhhhccccC-CC
Q 017196 213 AYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLH-HP 291 (375)
Q Consensus 213 ~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~~~~~~~~~~~-~~ 291 (375)
.++.++...++.+...... +.|+|++|||+++ ..++.+.... .+
T Consensus 140 kRG~~Lel~LeRL~~l~~~----------------------------------~~QrIgLSATI~n-~eevA~~L~g~~p 184 (1490)
T PRK09751 140 KRGAHLALSLERLDALLHT----------------------------------SAQRIGLSATVRS-ASDVAAFLGGDRP 184 (1490)
T ss_pred ccccHHHHHHHHHHHhCCC----------------------------------CCeEEEEEeeCCC-HHHHHHHhcCCCC
Confidence 4444555455444432111 6799999999976 4555543322 34
Q ss_pred eEEecCCccccCcccceeEEEeccCCCc----------------H-----HHHHHHHHhc-CCCeEEEEcCChhhHHHHH
Q 017196 292 LFLTTGETRYKLPERLESYKLICESKLK----------------P-----LYLVALLQSL-GEEKCIVFTSSVESTHRLC 349 (375)
Q Consensus 292 ~~i~~~~~~~~~~~~i~~~~~~~~~~~k----------------~-----~~l~~ll~~~-~~~k~lIF~~s~~~a~~l~ 349 (375)
..+...... ....++ .++...+..+ . .....++... ...++||||||+..|+.++
T Consensus 185 v~Iv~~~~~--r~~~l~-v~vp~~d~~~~~~~~~~~~~~~~~~r~~~i~~~v~~~il~~i~~~~stLVFvNSR~~AE~La 261 (1490)
T PRK09751 185 VTVVNPPAM--RHPQIR-IVVPVANMDDVSSVASGTGEDSHAGREGSIWPYIETGILDEVLRHRSTIVFTNSRGLAEKLT 261 (1490)
T ss_pred EEEECCCCC--cccceE-EEEecCchhhccccccccccccchhhhhhhhHHHHHHHHHHHhcCCCEEEECCCHHHHHHHH
Confidence 444322111 111122 1111111000 0 1111233322 3568999999999999999
Q ss_pred HHHHHhcCC------------------------------cceEEeccccccccccC
Q 017196 350 TLLNHFGEL------------------------------RIKIKEYSGLQRQSVRR 375 (375)
Q Consensus 350 ~~L~~~g~~------------------------------~~~~~~lh~~~~~~~R~ 375 (375)
..|+..... ...+..+||+|++++|.
T Consensus 262 ~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~HHGsLSkeeR~ 317 (1490)
T PRK09751 262 ARLNELYAARLQRSPSIAVDAAHFESTSGATSNRVQSSDVFIARSHHGSVSKEQRA 317 (1490)
T ss_pred HHHHHhhhhhccccccccchhhhhhhccccchhccccccceeeeeccccCCHHHHH
Confidence 999764210 12367899999999984
No 59
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=99.95 E-value=4.5e-26 Score=231.75 Aligned_cols=263 Identities=16% Similarity=0.172 Sum_probs=177.6
Q ss_pred HHHHHHHHhCCCCCccHhhHHHHHHhhCCCCCC--CCEEEECCCCCchHHHhHHHHHHHhhhcccCCceEEEEcccHHHH
Q 017196 37 PRLKVALQNMGISSLFPVQVAVWQETIGPGLFE--RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLA 114 (375)
Q Consensus 37 ~~i~~~l~~~g~~~~~~~Q~~~~~~~~~~~~~~--~~~ii~a~TGsGKTl~~~l~il~~l~~~~~~~~~~lil~Pt~~L~ 114 (375)
..+.+.+..++| +|++.|.+|++.++..+... .+.+++++||||||++|+++++..+.. +.+++|++||++||
T Consensus 223 ~~~~~~~~~lpf-~lt~~Q~~ai~~I~~~~~~~~~~~~Ll~g~TGSGKT~va~l~il~~~~~----g~qvlilaPT~~LA 297 (630)
T TIGR00643 223 ELLTKFLASLPF-KLTRAQKRVVKEILQDLKSDVPMNRLLQGDVGSGKTLVAALAMLAAIEA----GYQVALMAPTEILA 297 (630)
T ss_pred HHHHHHHHhCCC-CCCHHHHHHHHHHHHHhccCCCccEEEECCCCCcHHHHHHHHHHHHHHc----CCcEEEECCHHHHH
Confidence 345566678899 89999999999998654333 478999999999999999999988754 34799999999999
Q ss_pred HHHHHHHHHhccccCceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhc-CCCcEEEeCcHHHHHHHhhcCCC
Q 017196 115 LQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQ-SAVDILVATPGRLMDHINATRGF 193 (375)
Q Consensus 115 ~Q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~IiV~Tp~~l~~~l~~~~~~ 193 (375)
.|+++.+++++...++++..++|+........ +...+. +.++|+||||+.+.+ .+
T Consensus 298 ~Q~~~~~~~l~~~~gi~v~lltg~~~~~~r~~------------------~~~~i~~g~~~IiVgT~~ll~~------~~ 353 (630)
T TIGR00643 298 EQHYNSLRNLLAPLGIEVALLTGSLKGKRRKE------------------LLETIASGQIHLVVGTHALIQE------KV 353 (630)
T ss_pred HHHHHHHHHHhcccCcEEEEEecCCCHHHHHH------------------HHHHHhCCCCCEEEecHHHHhc------cc
Confidence 99999999999988999999999987655422 223333 458999999987642 35
Q ss_pred CCCCccEEEEecchhhhhHhHHhHHHHHHHhhhcccccccccccccccccccccccccccccccCCCCCCCCceeEEEEE
Q 017196 194 TLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLS 273 (375)
Q Consensus 194 ~~~~~~~vIiDE~h~l~~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~S 273 (375)
.+.++++|||||+|++...... .+....... .+.++++||
T Consensus 354 ~~~~l~lvVIDEaH~fg~~qr~----~l~~~~~~~------------------------------------~~~~~l~~S 393 (630)
T TIGR00643 354 EFKRLALVIIDEQHRFGVEQRK----KLREKGQGG------------------------------------FTPHVLVMS 393 (630)
T ss_pred cccccceEEEechhhccHHHHH----HHHHhcccC------------------------------------CCCCEEEEe
Confidence 6788999999999987443321 122221110 145789999
Q ss_pred EecCCCchhhhccccCCCeEEecCCccccCcccceeEEEeccCCCcHHHHHHHHHh-c-CCCeEEEEcCCh--------h
Q 017196 274 ATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQS-L-GEEKCIVFTSSV--------E 343 (375)
Q Consensus 274 ATl~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~-~-~~~k~lIF~~s~--------~ 343 (375)
||+.+....+......+...+..... -...+.... .....+ ..+...+.. . .+.+++|||+.+ .
T Consensus 394 ATp~prtl~l~~~~~l~~~~i~~~p~---~r~~i~~~~--~~~~~~-~~~~~~i~~~l~~g~q~~v~~~~i~~s~~~~~~ 467 (630)
T TIGR00643 394 ATPIPRTLALTVYGDLDTSIIDELPP---GRKPITTVL--IKHDEK-DIVYEFIEEEIAKGRQAYVVYPLIEESEKLDLK 467 (630)
T ss_pred CCCCcHHHHHHhcCCcceeeeccCCC---CCCceEEEE--eCcchH-HHHHHHHHHHHHhCCcEEEEEccccccccchHH
Confidence 99765433222111111111111010 011232322 222223 334444433 2 467899999876 4
Q ss_pred hHHHHHHHHHHhcCCcceEEeccccccccccC
Q 017196 344 STHRLCTLLNHFGELRIKIKEYSGLQRQSVRR 375 (375)
Q Consensus 344 ~a~~l~~~L~~~g~~~~~~~~lh~~~~~~~R~ 375 (375)
.|+.+++.|.... .++.+..+||+|++++|+
T Consensus 468 ~a~~~~~~L~~~~-~~~~v~~lHG~m~~~eR~ 498 (630)
T TIGR00643 468 AAEALYERLKKAF-PKYNVGLLHGRMKSDEKE 498 (630)
T ss_pred HHHHHHHHHHhhC-CCCcEEEEeCCCCHHHHH
Confidence 5667888887542 468899999999998874
No 60
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=99.94 E-value=4e-26 Score=194.71 Aligned_cols=149 Identities=32% Similarity=0.523 Sum_probs=125.6
Q ss_pred cHhhHHHHHHhhCCCCCCCCEEEECCCCCchHHHhHHHHHHHhhhcccCCceEEEEcccHHHHHHHHHHHHHhccccCce
Q 017196 52 FPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLS 131 (375)
Q Consensus 52 ~~~Q~~~~~~~~~~~~~~~~~ii~a~TGsGKTl~~~l~il~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~ 131 (375)
||+|.++++.++ +|+++++.+|||+|||++|+++++..+.+. +..+++|++|+++|++|....+..++...+++
T Consensus 1 t~~Q~~~~~~i~----~~~~~li~aptGsGKT~~~~~~~l~~~~~~--~~~~~lii~P~~~l~~q~~~~~~~~~~~~~~~ 74 (169)
T PF00270_consen 1 TPLQQEAIEAII----SGKNVLISAPTGSGKTLAYILPALNRLQEG--KDARVLIIVPTRALAEQQFERLRKFFSNTNVR 74 (169)
T ss_dssp -HHHHHHHHHHH----TTSEEEEECSTTSSHHHHHHHHHHHHHHTT--SSSEEEEEESSHHHHHHHHHHHHHHTTTTTSS
T ss_pred CHHHHHHHHHHH----cCCCEEEECCCCCccHHHHHHHHHhhhccC--CCceEEEEeecccccccccccccccccccccc
Confidence 689999999888 589999999999999999999999988776 33489999999999999999999999887889
Q ss_pred EEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcCCCcEEEeCcHHHHHHHhhcCCCCCCCccEEEEecchhhhh
Q 017196 132 VGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLR 211 (375)
Q Consensus 132 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiV~Tp~~l~~~l~~~~~~~~~~~~~vIiDE~h~l~~ 211 (375)
+..++++........ ..+..+++|+|+||++|.+.+.... ..+.++++||+||+|.+..
T Consensus 75 ~~~~~~~~~~~~~~~--------------------~~~~~~~~ilv~T~~~l~~~~~~~~-~~~~~~~~iViDE~h~l~~ 133 (169)
T PF00270_consen 75 VVLLHGGQSISEDQR--------------------EVLSNQADILVTTPEQLLDLISNGK-INISRLSLIVIDEAHHLSD 133 (169)
T ss_dssp EEEESTTSCHHHHHH--------------------HHHHTTSSEEEEEHHHHHHHHHTTS-STGTTESEEEEETHHHHHH
T ss_pred ccccccccccccccc--------------------ccccccccccccCcchhhccccccc-cccccceeeccCccccccc
Confidence 999999887543322 2345678999999999999998843 4777799999999999988
Q ss_pred HhHHhHHHHHHHhhhc
Q 017196 212 EAYQAWLPTVLQLTRS 227 (375)
Q Consensus 212 ~~~~~~l~~i~~~l~~ 227 (375)
..+...+..+...+..
T Consensus 134 ~~~~~~~~~i~~~~~~ 149 (169)
T PF00270_consen 134 ETFRAMLKSILRRLKR 149 (169)
T ss_dssp TTHHHHHHHHHHHSHT
T ss_pred ccHHHHHHHHHHHhcC
Confidence 7777778888877654
No 61
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=99.94 E-value=8e-26 Score=216.22 Aligned_cols=249 Identities=16% Similarity=0.101 Sum_probs=159.0
Q ss_pred CEEEECCCCCchHHHhHHHHHHHhhhcccCCceEEEEcccHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHHhh
Q 017196 71 DLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIK 150 (375)
Q Consensus 71 ~~ii~a~TGsGKTl~~~l~il~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 150 (375)
++++.||||||||++|+++++..+... ...+++|++|+++|+.|+++.++.++.. ++..++++........ ...
T Consensus 1 ~vvi~apTGsGKT~~~~~~~l~~~~~~--~~~~ii~v~P~~~L~~q~~~~l~~~f~~---~~~~~~~~~~~~~~~~-~~~ 74 (358)
T TIGR01587 1 LLVIEAPTGYGKTEAALLWALHSIKSQ--KADRVIIALPTRATINAMYRRAKELFGS---NLGLLHSSSSFKRIKE-MGD 74 (358)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHHHhhC--CCCeEEEEeehHHHHHHHHHHHHHHhCc---ccEEeeccHHHHHHhc-cCC
Confidence 589999999999999999999887543 4458999999999999999999987542 4555666543211100 000
Q ss_pred cCccccCccCCchhHHHh------hcCCCcEEEeCcHHHHHHHhh-cCCC--C--CCCccEEEEecchhhhhHhHHhHHH
Q 017196 151 RPKLEAGICYDPEDVLQE------LQSAVDILVATPGRLMDHINA-TRGF--T--LEHLCYLVVDETDRLLREAYQAWLP 219 (375)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~------~~~~~~IiV~Tp~~l~~~l~~-~~~~--~--~~~~~~vIiDE~h~l~~~~~~~~l~ 219 (375)
. . . ....... .....+|+|+||+++...+.. .+.. . .-..++||+||+|.+....+.. +.
T Consensus 75 ~----~--~--~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iViDE~h~~~~~~~~~-l~ 145 (358)
T TIGR01587 75 S----E--E--FEHLFPLYIHSNDKLFLDPITVCTIDQVLKSVFGEFGHYEFTLASIANSLLIFDEVHFYDEYTLAL-IL 145 (358)
T ss_pred c----h--h--HHHHHHHHhhchhhhhhCCeeeCCHHHHHHHHhcccchHHHHHHHhcCCEEEEeCCCCCCHHHHHH-HH
Confidence 0 0 0 0000001 112468999999999887765 1111 1 1123789999999998765433 55
Q ss_pred HHHHhhhcccccccccccccccccccccccccccccccCCCCCCCCceeEEEEEEecCCCchhhhccccCCCeEEecCCc
Q 017196 220 TVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGET 299 (375)
Q Consensus 220 ~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~~~~~~~~~~~~~~~i~~~~~ 299 (375)
.++..+... +.|+++||||+|+.+.++................
T Consensus 146 ~~l~~l~~~-------------------------------------~~~~i~~SATlp~~l~~~~~~~~~~~~~~~~~~~ 188 (358)
T TIGR01587 146 AVLEVLKDN-------------------------------------DVPILLMSATLPKFLKEYAEKIGYVEFNEPLDLK 188 (358)
T ss_pred HHHHHHHHc-------------------------------------CCCEEEEecCchHHHHHHHhcCCCcccccCCCCc
Confidence 555555421 5679999999996665555444322111111111
Q ss_pred cccCcccceeEEEe--ccCCCcHHHHHHHHHhc-CCCeEEEEcCChhhHHHHHHHHHHhcCCcceEEecccccccccc
Q 017196 300 RYKLPERLESYKLI--CESKLKPLYLVALLQSL-GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVR 374 (375)
Q Consensus 300 ~~~~~~~i~~~~~~--~~~~~k~~~l~~ll~~~-~~~k~lIF~~s~~~a~~l~~~L~~~g~~~~~~~~lh~~~~~~~R 374 (375)
. ......+.+.. .....+...+..+++.. .++++||||+++++|+.+++.|++.+ .+..+..+||+|++.+|
T Consensus 189 ~--~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lVf~~t~~~~~~~~~~L~~~~-~~~~~~~~h~~~~~~~r 263 (358)
T TIGR01587 189 E--ERRFERHRFIKIESDKVGEISSLERLLEFIKKGGKIAIIVNTVDRAQEFYQQLKENA-PEEEIMLLHSRFTEKDR 263 (358)
T ss_pred c--ccccccccceeeccccccCHHHHHHHHHHhhCCCeEEEEECCHHHHHHHHHHHHhhc-CCCeEEEEECCCCHHHH
Confidence 0 00111222211 22345667777777654 46799999999999999999998654 22369999999999887
No 62
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=99.94 E-value=1.2e-24 Score=207.03 Aligned_cols=268 Identities=20% Similarity=0.160 Sum_probs=163.3
Q ss_pred hhHHHHHHhhCCCCCC-CCEEEECCCCCchHHHhHHHHHHHhhhcccCCceEEEEcccHHHHHHHHHHHHHhccc----c
Q 017196 54 VQVAVWQETIGPGLFE-RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPA----V 128 (375)
Q Consensus 54 ~Q~~~~~~~~~~~~~~-~~~ii~a~TGsGKTl~~~l~il~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~----~ 128 (375)
+|.++|+.+.. .+ .+++++||||+|||.+|+++++. ...++++++|+++|++|+++.++.+... .
T Consensus 1 hQ~~~~~~~~~---~~~~~~~i~apTGsGKT~~~~~~~l~-------~~~~~~~~~P~~aL~~~~~~~~~~~~~~~~~~~ 70 (357)
T TIGR03158 1 HQVATFEALQS---KDADIIFNTAPTGAGKTLAWLTPLLH-------GENDTIALYPTNALIEDQTEAIKEFVDVFKPER 70 (357)
T ss_pred CHHHHHHHHHc---CCCCEEEEECCCCCCHHHHHHHHHHH-------cCCCEEEEeChHHHHHHHHHHHHHHHHhcCCCC
Confidence 69999988874 22 24788999999999999999884 1236899999999999999999988743 2
Q ss_pred CceEEEeecCCchHHHHHHHhhcCccccCccCCchh----HHH-hhcCCCcEEEeCcHHHHHHHhhc---CCC----CCC
Q 017196 129 GLSVGLAVGQSSIADEISELIKRPKLEAGICYDPED----VLQ-ELQSAVDILVATPGRLMDHINAT---RGF----TLE 196 (375)
Q Consensus 129 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~-~~~~~~~IiV~Tp~~l~~~l~~~---~~~----~~~ 196 (375)
+..+..+.|....+ .+.+.+.. .....++. ... .....++|++|||+.+..+++.. +.. .+.
T Consensus 71 ~~~v~~~~g~~~~d--~~~~~~~~----~~~~~g~~~~~~~r~~~~~~~p~illT~p~~l~~llr~~~~~~~~~~~~~~~ 144 (357)
T TIGR03158 71 DVNLLHVSKATLKD--IKEYANDK----VGSSKGEKLYNLLRNPIGTSTPIILLTNPDIFVYLTRFAYIDRGDIAAGFYT 144 (357)
T ss_pred CceEEEecCCchHH--HHHhhhhh----cccCccchhhhhHHHHHhcCCCCEEEecHHHHHHHHhhhccCcccchhhhhc
Confidence 56676666652221 11111000 00001111 111 12346899999999998766542 111 157
Q ss_pred CccEEEEecchhhhhHhHHhHH--HHHHHhhhcccccccccccccccccccccccccccccccCCCCCCCCceeEEEEEE
Q 017196 197 HLCYLVVDETDRLLREAYQAWL--PTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSA 274 (375)
Q Consensus 197 ~~~~vIiDE~h~l~~~~~~~~l--~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SA 274 (375)
.+++||+||+|.+........+ ......+..... ..+++++||
T Consensus 145 ~~~~iV~DE~H~~~~~~~~~~~~~l~~~~~~~~~~~-----------------------------------~~~~i~lSA 189 (357)
T TIGR03158 145 KFSTVIFDEFHLYDAKQLVGMLFLLAYMQLIRFFEC-----------------------------------RRKFVFLSA 189 (357)
T ss_pred CCCEEEEecccccCcccchhhhhhhHHHHHHHhhhc-----------------------------------CCcEEEEec
Confidence 8999999999987543211111 111121111000 246999999
Q ss_pred ecCCCchhhhccc--cCCCeEEecCCcc---------ccCc--------ccceeEEEeccCCCcHHHHHHHHH-------
Q 017196 275 TLTQDPNKLAQLD--LHHPLFLTTGETR---------YKLP--------ERLESYKLICESKLKPLYLVALLQ------- 328 (375)
Q Consensus 275 Tl~~~~~~~~~~~--~~~~~~i~~~~~~---------~~~~--------~~i~~~~~~~~~~~k~~~l~~ll~------- 328 (375)
|++..+....... +..+.....+... ...+ ..+++.+.. ....+...+..+++
T Consensus 190 T~~~~~~~~l~~~~~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~l~~l~~~i~~~~~ 268 (357)
T TIGR03158 190 TPDPALILRLQNAKQAGVKIAPIDGEKYQFPDNPELEADNKTQSFRPVLPPVELELIP-APDFKEEELSELAEEVIERFR 268 (357)
T ss_pred CCCHHHHHHHHhccccCceeeeecCcccccCCChhhhccccccccceeccceEEEEEe-CCchhHHHHHHHHHHHHHHHh
Confidence 9987655555443 3333322222100 0000 245555444 33344444433332
Q ss_pred hcCCCeEEEEcCChhhHHHHHHHHHHhcCCcceEEecccccccccc
Q 017196 329 SLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVR 374 (375)
Q Consensus 329 ~~~~~k~lIF~~s~~~a~~l~~~L~~~g~~~~~~~~lh~~~~~~~R 374 (375)
..+++++||||||+++|+.+++.|+..+ .++.+..+||.+++.+|
T Consensus 269 ~~~~~k~LIf~nt~~~~~~l~~~L~~~~-~~~~~~~l~g~~~~~~R 313 (357)
T TIGR03158 269 QLPGERGAIILDSLDEVNRLSDLLQQQG-LGDDIGRITGFAPKKDR 313 (357)
T ss_pred ccCCCeEEEEECCHHHHHHHHHHHhhhC-CCceEEeeecCCCHHHH
Confidence 2356799999999999999999998643 34678899999999877
No 63
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=99.94 E-value=8.6e-26 Score=225.94 Aligned_cols=266 Identities=20% Similarity=0.213 Sum_probs=184.6
Q ss_pred hCCCCCccHhhHHHHHHhhCCCCCCCCEEEECCCCCchHHHhHHHHHHHhhhcc------cCCceEEEEcccHHHHHHHH
Q 017196 45 NMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRA------VRCLRALVVLPTRDLALQVK 118 (375)
Q Consensus 45 ~~g~~~~~~~Q~~~~~~~~~~~~~~~~~ii~a~TGsGKTl~~~l~il~~l~~~~------~~~~~~lil~Pt~~L~~Q~~ 118 (375)
-++|..++.+|+++++-++. ++.|++||||||+|||-.|++.+++.+++.. ....+++||+|+++||.+++
T Consensus 105 ~f~f~~fN~iQS~vFp~aY~---SneNMLIcAPTGsGKT~la~L~ILr~ik~~~~~~~i~k~~fKiVYIaPmKALa~Em~ 181 (1230)
T KOG0952|consen 105 FFSFEEFNRIQSEVFPVAYK---SNENMLICAPTGSGKTVLAELCILRTIKEHEEQGDIAKDDFKIVYIAPMKALAAEMV 181 (1230)
T ss_pred cccHHHHHHHHHHhhhhhhc---CCCCEEEECCCCCCchHHHHHHHHHHHHhhccccccccCCceEEEEechHHHHHHHH
Confidence 36889999999999998886 7889999999999999999999999998622 34578999999999999999
Q ss_pred HHHHHhccccCceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcCCCcEEEeCcHHHHHHHhhcCC---CCC
Q 017196 119 DVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRG---FTL 195 (375)
Q Consensus 119 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiV~Tp~~l~~~l~~~~~---~~~ 195 (375)
+.|.+-+..+|++|..++|+....... -..++|+|+||++. +.+.++.. -.+
T Consensus 182 ~~~~kkl~~~gi~v~ELTGD~ql~~te------------------------i~~tqiiVTTPEKw-DvvTRk~~~d~~l~ 236 (1230)
T KOG0952|consen 182 DKFSKKLAPLGISVRELTGDTQLTKTE------------------------IADTQIIVTTPEKW-DVVTRKSVGDSALF 236 (1230)
T ss_pred HHHhhhcccccceEEEecCcchhhHHH------------------------HHhcCEEEecccce-eeeeeeeccchhhh
Confidence 999988888899999999997654441 23579999999984 55544222 236
Q ss_pred CCccEEEEecchhhhhHhHHhHHHHHHHhhhc---ccccccccccccccccccccccccccccccCCCCCCCCceeEEEE
Q 017196 196 EHLCYLVVDETDRLLREAYQAWLPTVLQLTRS---DNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVL 272 (375)
Q Consensus 196 ~~~~~vIiDE~h~l~~~~~~~~l~~i~~~l~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~ 272 (375)
+.+++|||||+|.+ ....++.++.|+..... ..+. .++++++
T Consensus 237 ~~V~LviIDEVHlL-hd~RGpvlEtiVaRtlr~vessqs----------------------------------~IRivgL 281 (1230)
T KOG0952|consen 237 SLVRLVIIDEVHLL-HDDRGPVLETIVARTLRLVESSQS----------------------------------MIRIVGL 281 (1230)
T ss_pred hheeeEEeeeehhh-cCcccchHHHHHHHHHHHHHhhhh----------------------------------heEEEEe
Confidence 78899999999976 44446777777766552 1221 6779999
Q ss_pred EEecCCCchhhhccccCCCeEEecCCccccCcccceeEEEeccCC---CcHHHHHH-----HHHhc-CCCeEEEEcCChh
Q 017196 273 SATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESK---LKPLYLVA-----LLQSL-GEEKCIVFTSSVE 343 (375)
Q Consensus 273 SATl~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~---~k~~~l~~-----ll~~~-~~~k~lIF~~s~~ 343 (375)
|||+|+ ....+...-.++..-.........|..+.+.+.-.+.. .+.+.+.+ .++.. .+.+++|||.++.
T Consensus 282 SATlPN-~eDvA~fL~vn~~~glfsFd~~yRPvpL~~~~iG~k~~~~~~~~~~~d~~~~~kv~e~~~~g~qVlvFvhsR~ 360 (1230)
T KOG0952|consen 282 SATLPN-YEDVARFLRVNPYAGLFSFDQRYRPVPLTQGFIGIKGKKNRQQKKNIDEVCYDKVVEFLQEGHQVLVFVHSRN 360 (1230)
T ss_pred eccCCC-HHHHHHHhcCCCccceeeecccccccceeeeEEeeecccchhhhhhHHHHHHHHHHHHHHcCCeEEEEEecCh
Confidence 999985 33433332223221111111113344455544444433 22222211 11211 4779999999999
Q ss_pred hHHHHHHHHHHhcC-Cc-------------------ceEEecccccccccc
Q 017196 344 STHRLCTLLNHFGE-LR-------------------IKIKEYSGLQRQSVR 374 (375)
Q Consensus 344 ~a~~l~~~L~~~g~-~~-------------------~~~~~lh~~~~~~~R 374 (375)
++.+.|+.|.+.+. .| .-..+.|+||..++|
T Consensus 361 ~Ti~tA~~l~~~a~~~g~~~~f~~~~~~k~l~elf~~g~~iHhAGm~r~DR 411 (1230)
T KOG0952|consen 361 ETIRTAKKLRERAETNGEKDLFLPSPRNKQLKELFQQGMGIHHAGMLRSDR 411 (1230)
T ss_pred HHHHHHHHHHHHHHhcCcccccCCChhhHHHHHHHHhhhhhcccccchhhH
Confidence 99999998865420 01 235667888888777
No 64
>PHA02558 uvsW UvsW helicase; Provisional
Probab=99.93 E-value=3.4e-25 Score=219.93 Aligned_cols=243 Identities=17% Similarity=0.160 Sum_probs=157.8
Q ss_pred CCccHhhHHHHHHhhCCCCCCCCEEEECCCCCchHHHhHHHHHHHhhhcccCCceEEEEcccHHHHHHHHHHHHHhcccc
Q 017196 49 SSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAV 128 (375)
Q Consensus 49 ~~~~~~Q~~~~~~~~~~~~~~~~~ii~a~TGsGKTl~~~l~il~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~ 128 (375)
..|+++|.+|++.++ .++++++++|||+|||.++...+ ..+... ...++|||+||++|+.||.+.+++++...
T Consensus 113 ~~~r~~Q~~av~~~l----~~~~~il~apTGsGKT~i~~~l~-~~~~~~--~~~~vLilvpt~eL~~Q~~~~l~~~~~~~ 185 (501)
T PHA02558 113 IEPHWYQYDAVYEGL----KNNRRLLNLPTSAGKSLIQYLLS-RYYLEN--YEGKVLIIVPTTSLVTQMIDDFVDYRLFP 185 (501)
T ss_pred CCCCHHHHHHHHHHH----hcCceEEEeCCCCCHHHHHHHHH-HHHHhc--CCCeEEEEECcHHHHHHHHHHHHHhcccc
Confidence 489999999988877 46789999999999999765432 222222 23379999999999999999999887543
Q ss_pred CceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcCCCcEEEeCcHHHHHHHhhcCCCCCCCccEEEEecchh
Q 017196 129 GLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDR 208 (375)
Q Consensus 129 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiV~Tp~~l~~~l~~~~~~~~~~~~~vIiDE~h~ 208 (375)
...+..+.+|... ..+.+|+|+||+++.+... ..+.++++||+||||+
T Consensus 186 ~~~~~~i~~g~~~----------------------------~~~~~I~VaT~qsl~~~~~----~~~~~~~~iIvDEaH~ 233 (501)
T PHA02558 186 REAMHKIYSGTAK----------------------------DTDAPIVVSTWQSAVKQPK----EWFDQFGMVIVDECHL 233 (501)
T ss_pred ccceeEEecCccc----------------------------CCCCCEEEeeHHHHhhchh----hhccccCEEEEEchhc
Confidence 4445555555421 1346899999999875432 2467899999999999
Q ss_pred hhhHhHHhHHHHHHHhhhcccccccccccccccccccccccccccccccCCCCCCCCceeEEEEEEecCCCchhhhc-cc
Q 017196 209 LLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQ-LD 287 (375)
Q Consensus 209 l~~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~~~~~~~-~~ 287 (375)
+.+..+ ..++..++. ..+++++|||+......... ..
T Consensus 234 ~~~~~~----~~il~~~~~--------------------------------------~~~~lGLTATp~~~~~~~~~~~~ 271 (501)
T PHA02558 234 FTGKSL----TSIITKLDN--------------------------------------CKFKFGLTGSLRDGKANILQYVG 271 (501)
T ss_pred ccchhH----HHHHHhhhc--------------------------------------cceEEEEeccCCCccccHHHHHH
Confidence 987654 344444433 33689999999643221111 11
Q ss_pred cCCCeEEecCCcc-----ccCcccce---------------------eEEEeccCCCcHHHHHHHHHhc--CCCeEEEEc
Q 017196 288 LHHPLFLTTGETR-----YKLPERLE---------------------SYKLICESKLKPLYLVALLQSL--GEEKCIVFT 339 (375)
Q Consensus 288 ~~~~~~i~~~~~~-----~~~~~~i~---------------------~~~~~~~~~~k~~~l~~ll~~~--~~~k~lIF~ 339 (375)
+..+....+.... ...+..+. .+........+...+..++... .+.+++|||
T Consensus 272 ~fG~i~~~v~~~~li~~g~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Rn~~I~~~~~~~~~~~~~~lV~~ 351 (501)
T PHA02558 272 LFGDIFKPVTTSQLMEEGQVTDLKINSIFLRYPDEDRVKLKGEDYQEEIKYITSHTKRNKWIANLALKLAKKGENTFVMF 351 (501)
T ss_pred hhCCceEEecHHHHHhCCCcCCceEEEEeccCCHHHhhhhcccchHHHHHHHhccHHHHHHHHHHHHHHHhcCCCEEEEE
Confidence 1122222111100 00000000 0001122233444455554433 356899999
Q ss_pred CChhhHHHHHHHHHHhcCCcceEEeccccccccccC
Q 017196 340 SSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRR 375 (375)
Q Consensus 340 ~s~~~a~~l~~~L~~~g~~~~~~~~lh~~~~~~~R~ 375 (375)
+++++|+.+++.|+..| .++..+||+|+.++|+
T Consensus 352 ~~~~h~~~L~~~L~~~g---~~v~~i~G~~~~~eR~ 384 (501)
T PHA02558 352 KYVEHGKPLYEMLKKVY---DKVYYVSGEVDTEDRN 384 (501)
T ss_pred EEHHHHHHHHHHHHHcC---CCEEEEeCCCCHHHHH
Confidence 99999999999999554 8999999999999884
No 65
>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification]
Probab=99.93 E-value=1.7e-25 Score=205.11 Aligned_cols=219 Identities=24% Similarity=0.299 Sum_probs=164.7
Q ss_pred ceEEEEcccHHHHHHHHHHHHHhcccc---CceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcCCCcEEEe
Q 017196 102 LRALVVLPTRDLALQVKDVFAAIAPAV---GLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVA 178 (375)
Q Consensus 102 ~~~lil~Pt~~L~~Q~~~~~~~~~~~~---~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiV~ 178 (375)
|.++|+-|+++|++|+++.+++|-... .++..++.||.-. .++.+.+..+.+|+||
T Consensus 287 p~avivepsrelaEqt~N~i~~Fk~h~~np~~r~lLmiggv~~---------------------r~Q~~ql~~g~~ivvG 345 (725)
T KOG0349|consen 287 PEAVIVEPSRELAEQTHNQIEEFKMHTSNPEVRSLLMIGGVLK---------------------RTQCKQLKDGTHIVVG 345 (725)
T ss_pred cceeEecCcHHHHHHHHhhHHHHHhhcCChhhhhhhhhhhHHh---------------------HHHHHHhhcCceeeec
Confidence 579999999999999999887764322 2344445554332 3345567889999999
Q ss_pred CcHHHHHHHhhcCCCCCCCccEEEEecchhhhhHhHHhHHHHHHHhhhcccccccccccccccccccccccccccccccC
Q 017196 179 TPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERG 258 (375)
Q Consensus 179 Tp~~l~~~l~~~~~~~~~~~~~vIiDE~h~l~~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (375)
||+++.+.+.. +.+.+.++.++|+||+|.++..+|...+..+...++.....
T Consensus 346 tpgRl~~~is~-g~~~lt~crFlvlDead~lL~qgy~d~I~r~h~qip~~tsd--------------------------- 397 (725)
T KOG0349|consen 346 TPGRLLQPISK-GLVTLTHCRFLVLDEADLLLGQGYDDKIYRFHGQIPHMTSD--------------------------- 397 (725)
T ss_pred Cchhhhhhhhc-cceeeeeeEEEEecchhhhhhcccHHHHHHHhccchhhhcC---------------------------
Confidence 99999999988 66889999999999999999999988888888888774331
Q ss_pred CCCCCCCceeEEEEEEecC-CCchhhhccccCCCeEEecCCccccCcccceeEEEeccCC--------------------
Q 017196 259 FKDKPYPRLVKMVLSATLT-QDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESK-------------------- 317 (375)
Q Consensus 259 ~~~~~~~~~q~i~~SATl~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~-------------------- 317 (375)
..++|.+++|||+. -++....++.++-|..+.....+ .++..++|....+..+
T Consensus 398 -----g~rlq~~vCsatlh~feVkk~~ervmhfptwVdLkgeD-~vpetvHhvv~lv~p~~d~sw~~lr~~i~td~vh~k 471 (725)
T KOG0349|consen 398 -----GFRLQSPVCSATLHIFEVKKVGERVMHFPTWVDLKGED-LVPETVHHVVKLVCPSVDGSWCDLRQFIETDKVHTK 471 (725)
T ss_pred -----CcccccceeeeEEeEEEeeehhhhhccCceeEeccccc-ccchhhccceeecCCccCccHHHHhhhhccCCcccc
Confidence 22679999999986 35666777777778877766544 4556666555443210
Q ss_pred ----------C---------cHHHHHHHHHhcCCCeEEEEcCChhhHHHHHHHHHHhcCCcceEEeccccccccccC
Q 017196 318 ----------L---------KPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRR 375 (375)
Q Consensus 318 ----------~---------k~~~l~~ll~~~~~~k~lIF~~s~~~a~~l~~~L~~~g~~~~~~~~lh~~~~~~~R~ 375 (375)
+ |-+.-...+++...+++||||.|+.+|+.+.+++.+.|...+.|+++||+..+.+|+
T Consensus 472 dn~~pg~~Spe~~s~a~kilkgEy~v~ai~~h~mdkaiifcrtk~dcDnLer~~~qkgg~~~scvclhgDrkP~Erk 548 (725)
T KOG0349|consen 472 DNLLPGQVSPENPSSATKILKGEYGVVAIRRHAMDKAIIFCRTKQDCDNLERMMNQKGGKHYSCVCLHGDRKPDERK 548 (725)
T ss_pred cccccccCCCCChhhhhHHhcCchhhhhhhhhccCceEEEEeccccchHHHHHHHHcCCccceeEEEecCCChhHHH
Confidence 0 111112334555678999999999999999999999998999999999999877774
No 66
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=99.92 E-value=3.3e-24 Score=221.23 Aligned_cols=235 Identities=20% Similarity=0.191 Sum_probs=164.0
Q ss_pred HhhCCCCCCCCEEEECCCCCchHHHhHHHHHHHhhhcccCCceEEEEcccHHHHHHHHHHHH-HhccccCceEEEeecCC
Q 017196 61 ETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFA-AIAPAVGLSVGLAVGQS 139 (375)
Q Consensus 61 ~~~~~~~~~~~~ii~a~TGsGKTl~~~l~il~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~~~-~~~~~~~~~v~~~~~~~ 139 (375)
.++..+.++++++++|+||||||.+|.+++++.... ..+++++.||+++|.|+.+.+. .+....|..++...++.
T Consensus 12 ~i~~~l~~~~~vvv~A~TGSGKTt~~pl~lL~~~~~----~~~ilvlqPrR~aA~qia~rva~~l~~~~g~~VGy~vr~~ 87 (812)
T PRK11664 12 ELLTALKTAPQVLLKAPTGAGKSTWLPLQLLQHGGI----NGKIIMLEPRRLAARNVAQRLAEQLGEKPGETVGYRMRAE 87 (812)
T ss_pred HHHHHHHhCCCEEEEcCCCCCHHHHHHHHHHHcCCc----CCeEEEECChHHHHHHHHHHHHHHhCcccCceEEEEecCc
Confidence 345555578899999999999999999998875422 2379999999999999999885 45555577777766654
Q ss_pred chHHHHHHHhhcCccccCccCCchhHHHhhcCCCcEEEeCcHHHHHHHhhcCCCCCCCccEEEEecchhh-hhHhH-HhH
Q 017196 140 SIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRL-LREAY-QAW 217 (375)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiV~Tp~~l~~~l~~~~~~~~~~~~~vIiDE~h~l-~~~~~-~~~ 217 (375)
+ ....+.+|+|+||+.|.+.+.. ...++.+++||+||+|.. ++.++ ...
T Consensus 88 ~---------------------------~~~~~t~I~v~T~G~Llr~l~~--d~~L~~v~~IIlDEaHER~l~~Dl~L~l 138 (812)
T PRK11664 88 S---------------------------KVGPNTRLEVVTEGILTRMIQR--DPELSGVGLVILDEFHERSLQADLALAL 138 (812)
T ss_pred c---------------------------ccCCCCcEEEEChhHHHHHHhh--CCCcCcCcEEEEcCCCccccccchHHHH
Confidence 2 1223458999999999998876 357899999999999973 33222 122
Q ss_pred HHHHHHhhhcccccccccccccccccccccccccccccccCCCCCCCCceeEEEEEEecCCCchhhhccccCCCeEEecC
Q 017196 218 LPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTG 297 (375)
Q Consensus 218 l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~~~~~~~~~~~~~~~i~~~ 297 (375)
+..+...++. +.|+++||||++.. .+ ..++.++..+...
T Consensus 139 l~~i~~~lr~--------------------------------------~lqlilmSATl~~~--~l-~~~~~~~~~I~~~ 177 (812)
T PRK11664 139 LLDVQQGLRD--------------------------------------DLKLLIMSATLDND--RL-QQLLPDAPVIVSE 177 (812)
T ss_pred HHHHHHhCCc--------------------------------------cceEEEEecCCCHH--HH-HHhcCCCCEEEec
Confidence 2333333332 67899999999753 23 3445444444443
Q ss_pred CccccCcccceeEEEeccCCCcHH-----HHHHHHHhcCCCeEEEEcCChhhHHHHHHHHHHhcCCcceEEecccccccc
Q 017196 298 ETRYKLPERLESYKLICESKLKPL-----YLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQS 372 (375)
Q Consensus 298 ~~~~~~~~~i~~~~~~~~~~~k~~-----~l~~ll~~~~~~k~lIF~~s~~~a~~l~~~L~~~g~~~~~~~~lh~~~~~~ 372 (375)
... ..++++|...+...+.. .+..+++. ..+++||||++..+++.+++.|......++.+..+||+|+.+
T Consensus 178 gr~----~pV~~~y~~~~~~~~~~~~v~~~l~~~l~~-~~g~iLVFlpg~~ei~~l~~~L~~~~~~~~~v~~Lhg~l~~~ 252 (812)
T PRK11664 178 GRS----FPVERRYQPLPAHQRFDEAVARATAELLRQ-ESGSLLLFLPGVGEIQRVQEQLASRVASDVLLCPLYGALSLA 252 (812)
T ss_pred Ccc----ccceEEeccCchhhhHHHHHHHHHHHHHHh-CCCCEEEEcCCHHHHHHHHHHHHHhccCCceEEEeeCCCCHH
Confidence 222 13566665555444432 33444433 356899999999999999999986322468899999999987
Q ss_pred cc
Q 017196 373 VR 374 (375)
Q Consensus 373 ~R 374 (375)
+|
T Consensus 253 eq 254 (812)
T PRK11664 253 EQ 254 (812)
T ss_pred HH
Confidence 76
No 67
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.92 E-value=7.2e-24 Score=218.35 Aligned_cols=234 Identities=19% Similarity=0.173 Sum_probs=163.7
Q ss_pred hhCCCCCCCCEEEECCCCCchHHHhHHHHHHHhhhcccCCceEEEEcccHHHHHHHHHHHH-HhccccCceEEEeecCCc
Q 017196 62 TIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFA-AIAPAVGLSVGLAVGQSS 140 (375)
Q Consensus 62 ~~~~~~~~~~~ii~a~TGsGKTl~~~l~il~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~~~-~~~~~~~~~v~~~~~~~~ 140 (375)
++..+.++++++++|+||||||.++.+++++... .+.+++++.|++++|.|+.+.+. .+....|..|+.......
T Consensus 10 i~~~l~~~~~vIi~a~TGSGKTT~vpl~lL~~~~----~~~~ilvlqPrR~aA~qiA~rva~~~~~~~g~~VGy~vr~~~ 85 (819)
T TIGR01970 10 LRDALAAHPQVVLEAPPGAGKSTAVPLALLDAPG----IGGKIIMLEPRRLAARSAAQRLASQLGEAVGQTVGYRVRGEN 85 (819)
T ss_pred HHHHHHcCCcEEEECCCCCCHHHHHHHHHHHhhc----cCCeEEEEeCcHHHHHHHHHHHHHHhCCCcCcEEEEEEcccc
Confidence 4444457889999999999999999999988763 23489999999999999999885 454445666665544432
Q ss_pred hHHHHHHHhhcCccccCccCCchhHHHhhcCCCcEEEeCcHHHHHHHhhcCCCCCCCccEEEEecchh-hhhHhHH-hHH
Q 017196 141 IADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDR-LLREAYQ-AWL 218 (375)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiV~Tp~~l~~~l~~~~~~~~~~~~~vIiDE~h~-l~~~~~~-~~l 218 (375)
....+.+|+|+||+.|.+.+.+. ..++.+++|||||+|. .++.++. ..+
T Consensus 86 ---------------------------~~s~~t~I~v~T~G~Llr~l~~d--~~L~~v~~VIiDEaHER~L~~Dl~L~ll 136 (819)
T TIGR01970 86 ---------------------------KVSRRTRLEVVTEGILTRMIQDD--PELDGVGALIFDEFHERSLDADLGLALA 136 (819)
T ss_pred ---------------------------ccCCCCcEEEECCcHHHHHHhhC--cccccCCEEEEeccchhhhccchHHHHH
Confidence 22345689999999999988763 5689999999999995 5554442 222
Q ss_pred HHHHHhhhcccccccccccccccccccccccccccccccCCCCCCCCceeEEEEEEecCCCchhhhccccCCCeEEecCC
Q 017196 219 PTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGE 298 (375)
Q Consensus 219 ~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~~~~~~~~~~~~~~~i~~~~ 298 (375)
..+...++. +.|+++||||++... + ..++.++..+....
T Consensus 137 ~~i~~~lr~--------------------------------------dlqlIlmSATl~~~~--l-~~~l~~~~vI~~~g 175 (819)
T TIGR01970 137 LDVQSSLRE--------------------------------------DLKILAMSATLDGER--L-SSLLPDAPVVESEG 175 (819)
T ss_pred HHHHHhcCC--------------------------------------CceEEEEeCCCCHHH--H-HHHcCCCcEEEecC
Confidence 333333332 678999999997532 2 34555444454433
Q ss_pred ccccCcccceeEEEeccCCCcH-----HHHHHHHHhcCCCeEEEEcCChhhHHHHHHHHHHhcCCcceEEeccccccccc
Q 017196 299 TRYKLPERLESYKLICESKLKP-----LYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSV 373 (375)
Q Consensus 299 ~~~~~~~~i~~~~~~~~~~~k~-----~~l~~ll~~~~~~k~lIF~~s~~~a~~l~~~L~~~g~~~~~~~~lh~~~~~~~ 373 (375)
.. ..++++|......++. ..+..+++. ..+++||||++..+++.+++.|......++.+..+||+|++++
T Consensus 176 r~----~pVe~~y~~~~~~~~~~~~v~~~l~~~l~~-~~g~iLVFlpg~~eI~~l~~~L~~~~~~~~~v~pLHg~L~~~e 250 (819)
T TIGR01970 176 RS----FPVEIRYLPLRGDQRLEDAVSRAVEHALAS-ETGSILVFLPGQAEIRRVQEQLAERLDSDVLICPLYGELSLAA 250 (819)
T ss_pred cc----eeeeeEEeecchhhhHHHHHHHHHHHHHHh-cCCcEEEEECCHHHHHHHHHHHHhhcCCCcEEEEecCCCCHHH
Confidence 22 1355666555444332 223334433 3568999999999999999999853224689999999999987
Q ss_pred c
Q 017196 374 R 374 (375)
Q Consensus 374 R 374 (375)
|
T Consensus 251 q 251 (819)
T TIGR01970 251 Q 251 (819)
T ss_pred H
Confidence 6
No 68
>PHA02653 RNA helicase NPH-II; Provisional
Probab=99.92 E-value=4e-24 Score=215.53 Aligned_cols=250 Identities=15% Similarity=0.078 Sum_probs=167.0
Q ss_pred CccHhhHHHHHHhhCCCCCCCCEEEECCCCCchHHH---------hHHHHHHHhhhc--ccCCceEEEEcccHHHHHHHH
Q 017196 50 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLS---------YALPIVQTLSNR--AVRCLRALVVLPTRDLALQVK 118 (375)
Q Consensus 50 ~~~~~Q~~~~~~~~~~~~~~~~~ii~a~TGsGKTl~---------~~l~il~~l~~~--~~~~~~~lil~Pt~~L~~Q~~ 118 (375)
++++.|..+-+++++.+.+|+++++.|+||||||.+ |++|.+..+..- .....++++++||++||.|+.
T Consensus 160 ~l~~~~~~iQ~qil~~i~~gkdvIv~A~TGSGKTtqvPq~l~~~~flf~~l~~l~~~~~~~~~~~ilvt~PrreLa~qi~ 239 (675)
T PHA02653 160 PLASLQPDVQLKIFEAWISRKPVVLTGGTGVGKTSQVPKLLLWFNYLFGGFDNLDKIDPNFIERPIVLSLPRVALVRLHS 239 (675)
T ss_pred cCCchhHHHHHHHHHHHHhCCCEEEECCCCCCchhHHHHHHHHhhhccchhhhhhhcccccCCcEEEEECcHHHHHHHHH
Confidence 466677666666677777899999999999999987 444555554321 123458999999999999999
Q ss_pred HHHHHhccc---cCceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcCCCcEEEeCcHHHHHHHhhcCCCCC
Q 017196 119 DVFAAIAPA---VGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTL 195 (375)
Q Consensus 119 ~~~~~~~~~---~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiV~Tp~~l~~~l~~~~~~~~ 195 (375)
..+.+.... .+..+...+|+... ... .......+|+|+|+.. ....+
T Consensus 240 ~~i~~~vg~~~~~g~~v~v~~Gg~~~-~~~---------------------~t~~k~~~Ilv~T~~L--------~l~~L 289 (675)
T PHA02653 240 ITLLKSLGFDEIDGSPISLKYGSIPD-ELI---------------------NTNPKPYGLVFSTHKL--------TLNKL 289 (675)
T ss_pred HHHHHHhCccccCCceEEEEECCcch-HHh---------------------hcccCCCCEEEEeCcc--------ccccc
Confidence 998765443 35677788888652 110 0112356999999752 11246
Q ss_pred CCccEEEEecchhhhhHhHHhHHHHHHHhhhcccccccccccccccccccccccccccccccCCCCCCCCceeEEEEEEe
Q 017196 196 EHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSAT 275 (375)
Q Consensus 196 ~~~~~vIiDE~h~l~~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SAT 275 (375)
+.+++||+||||.+...+ ..+..++..... . ..|+++||||
T Consensus 290 ~~v~~VVIDEaHEr~~~~--DllL~llk~~~~---~----------------------------------~rq~ILmSAT 330 (675)
T PHA02653 290 FDYGTVIIDEVHEHDQIG--DIIIAVARKHID---K----------------------------------IRSLFLMTAT 330 (675)
T ss_pred ccCCEEEccccccCccch--hHHHHHHHHhhh---h----------------------------------cCEEEEEccC
Confidence 789999999999986554 223333322211 0 2379999999
Q ss_pred cCCCchhhhccccCCCeEEecCCccccCcccceeEEEeccC----------CCcHHHHHHHHHh--cCCCeEEEEcCChh
Q 017196 276 LTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICES----------KLKPLYLVALLQS--LGEEKCIVFTSSVE 343 (375)
Q Consensus 276 l~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~~~~~~~----------~~k~~~l~~ll~~--~~~~k~lIF~~s~~ 343 (375)
++.++..+ ..++.++..+.+.... ...+++++..... ..+...+..+.+. ..++++||||++++
T Consensus 331 l~~dv~~l-~~~~~~p~~I~I~grt---~~pV~~~yi~~~~~~~~~~~y~~~~k~~~l~~L~~~~~~~~g~iLVFlpg~~ 406 (675)
T PHA02653 331 LEDDRDRI-KEFFPNPAFVHIPGGT---LFPISEVYVKNKYNPKNKRAYIEEEKKNIVTALKKYTPPKGSSGIVFVASVS 406 (675)
T ss_pred CcHhHHHH-HHHhcCCcEEEeCCCc---CCCeEEEEeecCcccccchhhhHHHHHHHHHHHHHhhcccCCcEEEEECcHH
Confidence 99877776 4677778777765321 1345555543221 1122223232222 23468999999999
Q ss_pred hHHHHHHHHHHhcCCcceEEeccccccccc
Q 017196 344 STHRLCTLLNHFGELRIKIKEYSGLQRQSV 373 (375)
Q Consensus 344 ~a~~l~~~L~~~g~~~~~~~~lh~~~~~~~ 373 (375)
+|+.+++.|.... .++.+..+||+|++++
T Consensus 407 ei~~l~~~L~~~~-~~~~v~~LHG~Lsq~e 435 (675)
T PHA02653 407 QCEEYKKYLEKRL-PIYDFYIIHGKVPNID 435 (675)
T ss_pred HHHHHHHHHHhhc-CCceEEeccCCcCHHH
Confidence 9999999998642 2589999999999753
No 69
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=99.91 E-value=7.2e-24 Score=207.08 Aligned_cols=257 Identities=19% Similarity=0.204 Sum_probs=183.9
Q ss_pred HHHHh-CCCCCccHhhHHHHHHhhCCCCCCCCEEEECCCCCchHHHhHHHHHHHhhhcccCCceEEEEcccHHHHHHHHH
Q 017196 41 VALQN-MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKD 119 (375)
Q Consensus 41 ~~l~~-~g~~~~~~~Q~~~~~~~~~~~~~~~~~ii~a~TGsGKTl~~~l~il~~l~~~~~~~~~~lil~Pt~~L~~Q~~~ 119 (375)
..|+. +|+..+++-|.++++.++ +|+|+++..|||.||++||.+|++-. . .-+|||.|..+|.+.+.+
T Consensus 7 ~~L~~~fGy~~FR~gQ~evI~~~l----~g~d~lvvmPTGgGKSlCyQiPAll~------~-G~TLVVSPLiSLM~DQV~ 75 (590)
T COG0514 7 QVLKQVFGYASFRPGQQEIIDALL----SGKDTLVVMPTGGGKSLCYQIPALLL------E-GLTLVVSPLISLMKDQVD 75 (590)
T ss_pred HHHHHHhCccccCCCHHHHHHHHH----cCCcEEEEccCCCCcchHhhhHHHhc------C-CCEEEECchHHHHHHHHH
Confidence 44544 699999999999988877 68999999999999999999999864 1 259999999999998888
Q ss_pred HHHHhccccCceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcC-CCcEEEeCcHHHHHHHhhcCCCCCCCc
Q 017196 120 VFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQS-AVDILVATPGRLMDHINATRGFTLEHL 198 (375)
Q Consensus 120 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~IiV~Tp~~l~~~l~~~~~~~~~~~ 198 (375)
.+++. |+.+..+.+..+..+.. .+...+.. ..+++.-+|+++..--.. ..+.-..+
T Consensus 76 ~l~~~----Gi~A~~lnS~l~~~e~~------------------~v~~~l~~g~~klLyisPErl~~~~f~-~~L~~~~i 132 (590)
T COG0514 76 QLEAA----GIRAAYLNSTLSREERQ------------------QVLNQLKSGQLKLLYISPERLMSPRFL-ELLKRLPI 132 (590)
T ss_pred HHHHc----CceeehhhcccCHHHHH------------------HHHHHHhcCceeEEEECchhhcChHHH-HHHHhCCC
Confidence 88876 78888888886655442 23334444 489999999988642211 11234577
Q ss_pred cEEEEecchhhhhHh--HHhHHHHHHHhhhcccccccccccccccccccccccccccccccCCCCCCCCceeEEEEEEec
Q 017196 199 CYLVVDETDRLLREA--YQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATL 276 (375)
Q Consensus 199 ~~vIiDE~h~l~~~~--~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl 276 (375)
.++||||||++..++ |++.+..+-......+ +..++.+|||-
T Consensus 133 ~l~vIDEAHCiSqWGhdFRP~Y~~lg~l~~~~~------------------------------------~~p~~AlTATA 176 (590)
T COG0514 133 SLVAIDEAHCISQWGHDFRPDYRRLGRLRAGLP------------------------------------NPPVLALTATA 176 (590)
T ss_pred ceEEechHHHHhhcCCccCHhHHHHHHHHhhCC------------------------------------CCCEEEEeCCC
Confidence 899999999999985 8777777766654422 45689999999
Q ss_pred CCCchhhhcccc--CCCeEEecCCccccCcccceeEEEecc-CCCcHHHHHHHHHhcCCCeEEEEcCChhhHHHHHHHHH
Q 017196 277 TQDPNKLAQLDL--HHPLFLTTGETRYKLPERLESYKLICE-SKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLN 353 (375)
Q Consensus 277 ~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~~i~~~~~~~~-~~~k~~~l~~ll~~~~~~k~lIF~~s~~~a~~l~~~L~ 353 (375)
++.+..-+...+ ..+..+.....+. ++........ ...+...+.+ ......+..||||.|++.|+.+++.|+
T Consensus 177 ~~~v~~DI~~~L~l~~~~~~~~sfdRp----Ni~~~v~~~~~~~~q~~fi~~-~~~~~~~~GIIYc~sRk~~E~ia~~L~ 251 (590)
T COG0514 177 TPRVRDDIREQLGLQDANIFRGSFDRP----NLALKVVEKGEPSDQLAFLAT-VLPQLSKSGIIYCLTRKKVEELAEWLR 251 (590)
T ss_pred ChHHHHHHHHHhcCCCcceEEecCCCc----hhhhhhhhcccHHHHHHHHHh-hccccCCCeEEEEeeHHhHHHHHHHHH
Confidence 887766554443 3554554444432 2221111111 1222222222 113345579999999999999999999
Q ss_pred HhcCCcceEEeccccccccccC
Q 017196 354 HFGELRIKIKEYSGLQRQSVRR 375 (375)
Q Consensus 354 ~~g~~~~~~~~lh~~~~~~~R~ 375 (375)
.. |+.+..||+||+..+|.
T Consensus 252 ~~---g~~a~~YHaGl~~~eR~ 270 (590)
T COG0514 252 KN---GISAGAYHAGLSNEERE 270 (590)
T ss_pred HC---CCceEEecCCCCHHHHH
Confidence 65 59999999999999883
No 70
>PRK09694 helicase Cas3; Provisional
Probab=99.91 E-value=1.1e-22 Score=209.78 Aligned_cols=283 Identities=19% Similarity=0.148 Sum_probs=171.0
Q ss_pred CCCccHhhHHHHHHhhCCCCCCCCEEEECCCCCchHHHhHHHHHHHhhhcccCCceEEEEcccHHHHHHHHHHHHHhccc
Q 017196 48 ISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPA 127 (375)
Q Consensus 48 ~~~~~~~Q~~~~~~~~~~~~~~~~~ii~a~TGsGKTl~~~l~il~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~ 127 (375)
...|+|+|..+.. + + ..+..++|.||||+|||.+++..+....... ...+++|.+||+++++|++.+++++...
T Consensus 284 ~~~p~p~Q~~~~~-~-~--~~pgl~ileApTGsGKTEAAL~~A~~l~~~~--~~~gi~~aLPT~Atan~m~~Rl~~~~~~ 357 (878)
T PRK09694 284 GYQPRQLQTLVDA-L-P--LQPGLTIIEAPTGSGKTEAALAYAWRLIDQG--LADSIIFALPTQATANAMLSRLEALASK 357 (878)
T ss_pred CCCChHHHHHHHh-h-c--cCCCeEEEEeCCCCCHHHHHHHHHHHHHHhC--CCCeEEEECcHHHHHHHHHHHHHHHHHH
Confidence 3489999998632 1 1 2456789999999999999877655444333 2347999999999999999999865432
Q ss_pred c--CceEEEeecCCchHHHHHHHhhcCccc---cCccCCchhHHHhhcC---CCcEEEeCcHHHHHHHhhcCCCCCCCcc
Q 017196 128 V--GLSVGLAVGQSSIADEISELIKRPKLE---AGICYDPEDVLQELQS---AVDILVATPGRLMDHINATRGFTLEHLC 199 (375)
Q Consensus 128 ~--~~~v~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~---~~~IiV~Tp~~l~~~l~~~~~~~~~~~~ 199 (375)
. +.++.+++|..........+....... .+......++...... -.+|+|||+++++..+...+...++.+.
T Consensus 358 ~f~~~~v~L~Hg~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~kr~llapi~V~TiDQlL~a~l~~kh~~lR~~~ 437 (878)
T PRK09694 358 LFPSPNLILAHGNSRFNHLFQSLKSRAATEQGQEEAWVQCCEWLSQSNKRVFLGQIGVCTIDQVLISVLPVKHRFIRGFG 437 (878)
T ss_pred hcCCCceEeecCcchhhhhhhhhhcccccccccchhhhHHHHHHhhhhhhhhcCCEEEcCHHHHHHHHHccchHHHHHHh
Confidence 2 457888998887665544433221000 0000001122221111 1699999999998766554443444444
Q ss_pred ----EEEEecchhhhhHhHHhHHHHHHHhhhcccccccccccccccccccccccccccccccCCCCCCCCceeEEEEEEe
Q 017196 200 ----YLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSAT 275 (375)
Q Consensus 200 ----~vIiDE~h~l~~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SAT 275 (375)
+|||||+|.+ +......+..+++.+... ...+|+||||
T Consensus 438 La~svvIiDEVHAy-D~ym~~lL~~~L~~l~~~-------------------------------------g~~vIllSAT 479 (878)
T PRK09694 438 LGRSVLIVDEVHAY-DAYMYGLLEAVLKAQAQA-------------------------------------GGSVILLSAT 479 (878)
T ss_pred hccCeEEEechhhC-CHHHHHHHHHHHHHHHhc-------------------------------------CCcEEEEeCC
Confidence 8999999977 444456667777665442 2348999999
Q ss_pred cCCCchh-hhccccCC---------CeEEecCC---ccccCcc-----cceeEEEe--c--cC-CCcHHHHHHHHHhc-C
Q 017196 276 LTQDPNK-LAQLDLHH---------PLFLTTGE---TRYKLPE-----RLESYKLI--C--ES-KLKPLYLVALLQSL-G 331 (375)
Q Consensus 276 l~~~~~~-~~~~~~~~---------~~~i~~~~---~~~~~~~-----~i~~~~~~--~--~~-~~k~~~l~~ll~~~-~ 331 (375)
+|....+ +...+-.. |....... ....... ...+.... . .. ......+..+++.. .
T Consensus 480 LP~~~r~~L~~a~~~~~~~~~~~~YPlvt~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~~l~~i~~~~~~ 559 (878)
T PRK09694 480 LPATLKQKLLDTYGGHDPVELSSAYPLITWRGVNGAQRFDLSAHPEQLPARFTIQLEPICLADMLPDLTLLQRMIAAANA 559 (878)
T ss_pred CCHHHHHHHHHHhccccccccccccccccccccccceeeeccccccccCcceEEEEEeeccccccCHHHHHHHHHHHHhc
Confidence 9976543 22222110 11100000 0000000 00111100 0 11 12233444444443 5
Q ss_pred CCeEEEEcCChhhHHHHHHHHHHhcCCcceEEecccccccccc
Q 017196 332 EEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVR 374 (375)
Q Consensus 332 ~~k~lIF~~s~~~a~~l~~~L~~~g~~~~~~~~lh~~~~~~~R 374 (375)
+++++|||||+++|+++++.|++.+..+.++..+||+++..+|
T Consensus 560 g~~vLVf~NTV~~Aq~ly~~L~~~~~~~~~v~llHsrf~~~dR 602 (878)
T PRK09694 560 GAQVCLICNLVDDAQKLYQRLKELNNTQVDIDLFHARFTLNDR 602 (878)
T ss_pred CCEEEEEECCHHHHHHHHHHHHhhCCCCceEEEEeCCCCHHHH
Confidence 6789999999999999999999654334689999999998887
No 71
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=99.89 E-value=6.6e-22 Score=196.82 Aligned_cols=290 Identities=20% Similarity=0.175 Sum_probs=191.1
Q ss_pred hCCCCCccHhhHHHHHHhhCCCCCCCCEEEECCCCCchHHHhHHHHHHHhhhcccCCceEEEEcccHHHHHHHHHHHHHh
Q 017196 45 NMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAI 124 (375)
Q Consensus 45 ~~g~~~~~~~Q~~~~~~~~~~~~~~~~~ii~a~TGsGKTl~~~l~il~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~ 124 (375)
.+|. .|+++|..+++.++ .|+ |..+.||+|||++|++|++.....+ +.++|++||++||.|.+..+..+
T Consensus 99 ~lg~-~p~~VQ~~~~~~ll----~G~--Iae~~TGeGKTla~~lp~~~~al~G----~~v~VvTptreLA~qdae~~~~l 167 (656)
T PRK12898 99 VLGQ-RHFDVQLMGGLALL----SGR--LAEMQTGEGKTLTATLPAGTAALAG----LPVHVITVNDYLAERDAELMRPL 167 (656)
T ss_pred HhCC-CCChHHHHHHHHHh----CCC--eeeeeCCCCcHHHHHHHHHHHhhcC----CeEEEEcCcHHHHHHHHHHHHHH
Confidence 3575 89999999987666 576 9999999999999999999876543 47999999999999999999999
Q ss_pred ccccCceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcCCCcEEEeCcHHH-HHHHhhcCC-----------
Q 017196 125 APAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRL-MDHINATRG----------- 192 (375)
Q Consensus 125 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiV~Tp~~l-~~~l~~~~~----------- 192 (375)
....|+++..++|+.+.... ....+++|++||...| .++++..-.
T Consensus 168 ~~~lGlsv~~i~gg~~~~~r-----------------------~~~y~~dIvygT~~e~~FDyLrd~~~~~~~~~~~~~~ 224 (656)
T PRK12898 168 YEALGLTVGCVVEDQSPDER-----------------------RAAYGADITYCTNKELVFDYLRDRLALGQRASDARLA 224 (656)
T ss_pred HhhcCCEEEEEeCCCCHHHH-----------------------HHHcCCCEEEECCCchhhhhccccccccccccchhhh
Confidence 99999999999998653222 3345789999998776 555543211
Q ss_pred -------------CCCCCccEEEEecchhhhh------------------HhHHhHHHHHHHhhhcccc------ccccc
Q 017196 193 -------------FTLEHLCYLVVDETDRLLR------------------EAYQAWLPTVLQLTRSDNE------NRFSD 235 (375)
Q Consensus 193 -------------~~~~~~~~vIiDE~h~l~~------------------~~~~~~l~~i~~~l~~~~~------~~~~~ 235 (375)
.-.+.+.+.||||+|.++= ..+......+...+..... .+.-.
T Consensus 225 ~~~l~~~~~~~~~~v~r~~~~aIvDEvDSiLiDeartpliis~~~~~~~~~~~y~~~~~~~~~l~~~~~y~~d~~~~~v~ 304 (656)
T PRK12898 225 LESLHGRSSRSTQLLLRGLHFAIVDEADSVLIDEARTPLIISAPAKEADEAEVYRQALELAAQLKEGEDYTIDAAEKRIE 304 (656)
T ss_pred hhhhccccCchhhhcccccceeEeecccceeeccCCCceEEECCCCCCchhHHHHHHHHHHHhcCCCCceEEECCCCeEE
Confidence 1246688999999999821 1111222222222221100 00000
Q ss_pred ----------------cccccccc---------c------c---------cccccccccccc------------------
Q 017196 236 ----------------ASTFLPSA---------F------G---------SLKTIRRCGVER------------------ 257 (375)
Q Consensus 236 ----------------~~~~~~~~---------~------~---------~~~~~~~~~~~~------------------ 257 (375)
.+.+.... . . +.-.+.+-..++
T Consensus 305 lt~~g~~~~e~~~~~l~~~~~~~~~~~~~i~~Al~A~~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~w~~GLhQaieaK 384 (656)
T PRK12898 305 LTEAGRARIAELAESLPPAWRGAVRREELVRQALSALHLFRRDEHYIVRDGKVVIVDEFTGRVMPDRSWEDGLHQMIEAK 384 (656)
T ss_pred EcHHHHHHHHHHhCcchhhcccchHHHHHHHHHHHHHHHHhcCCceEEECCeEEEEECCCCeECCCCCcChHHHHHHHHh
Confidence 00000000 0 0 000011111111
Q ss_pred --------------CCCCCCCCc-eeEEEEEEecCCCchhhhccccCCCeEEecCCccccCcccceeEEEeccCCCcHHH
Q 017196 258 --------------GFKDKPYPR-LVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLY 322 (375)
Q Consensus 258 --------------~~~~~~~~~-~q~i~~SATl~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~k~~~ 322 (375)
+.++.-+.. .++.+||||..+...++...+..+++.+-..... .....+.++.++...|...
T Consensus 385 E~v~i~~e~~t~a~It~q~~Fr~Y~kl~GmTGTa~~~~~El~~~y~l~vv~IPt~kp~---~r~~~~~~v~~t~~~K~~a 461 (656)
T PRK12898 385 EGCELTDPRETLARITYQRFFRRYLRLAGMTGTAREVAGELWSVYGLPVVRIPTNRPS---QRRHLPDEVFLTAAAKWAA 461 (656)
T ss_pred cCCCCCcCceeeeeehHHHHHHhhHHHhcccCcChHHHHHHHHHHCCCeEEeCCCCCc---cceecCCEEEeCHHHHHHH
Confidence 111111111 2578999999877777777776666555443332 2234455566777788999
Q ss_pred HHHHHHhc--CCCeEEEEcCChhhHHHHHHHHHHhcCCcceEEecccccccccc
Q 017196 323 LVALLQSL--GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVR 374 (375)
Q Consensus 323 l~~ll~~~--~~~k~lIF~~s~~~a~~l~~~L~~~g~~~~~~~~lh~~~~~~~R 374 (375)
+.++++.. .+.++||||+|++.++.+++.|...| +++..+||++.+++|
T Consensus 462 L~~~i~~~~~~~~pvLIft~t~~~se~L~~~L~~~g---i~~~~Lhg~~~~rE~ 512 (656)
T PRK12898 462 VAARVRELHAQGRPVLVGTRSVAASERLSALLREAG---LPHQVLNAKQDAEEA 512 (656)
T ss_pred HHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCC---CCEEEeeCCcHHHHH
Confidence 99998864 25689999999999999999999554 999999999877664
No 72
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.87 E-value=3.1e-21 Score=194.15 Aligned_cols=239 Identities=18% Similarity=0.135 Sum_probs=153.6
Q ss_pred CccHhhHHHHHHhhCCCCCC--CCEEEECCCCCchHHHhHHHHHHHhhhcccCCceEEEEcccHHHHHHHHHHHHHhccc
Q 017196 50 SLFPVQVAVWQETIGPGLFE--RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPA 127 (375)
Q Consensus 50 ~~~~~Q~~~~~~~~~~~~~~--~~~ii~a~TGsGKTl~~~l~il~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~ 127 (375)
.++|||.+|+..++. .| +..+|++|||+|||++.+.. +..+. .++|||||+..|++||.+.+.++...
T Consensus 255 ~LRpYQ~eAl~~~~~---~gr~r~GIIvLPtGaGKTlvai~a-a~~l~------k~tLILvps~~Lv~QW~~ef~~~~~l 324 (732)
T TIGR00603 255 QIRPYQEKSLSKMFG---NGRARSGIIVLPCGAGKSLVGVTA-ACTVK------KSCLVLCTSAVSVEQWKQQFKMWSTI 324 (732)
T ss_pred CcCHHHHHHHHHHHh---cCCCCCcEEEeCCCCChHHHHHHH-HHHhC------CCEEEEeCcHHHHHHHHHHHHHhcCC
Confidence 699999999988874 33 47899999999999987543 33332 25999999999999999999998754
Q ss_pred cCceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcCCCcEEEeCcHHHHHHHhhc-------CCCCCCCccE
Q 017196 128 VGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINAT-------RGFTLEHLCY 200 (375)
Q Consensus 128 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiV~Tp~~l~~~l~~~-------~~~~~~~~~~ 200 (375)
....+..++|+... ......+|+|+|++.+.....+. ..+.-..+++
T Consensus 325 ~~~~I~~~tg~~k~--------------------------~~~~~~~VvVtTYq~l~~~~~r~~~~~~~l~~l~~~~~gL 378 (732)
T TIGR00603 325 DDSQICRFTSDAKE--------------------------RFHGEAGVVVSTYSMVAHTGKRSYESEKVMEWLTNREWGL 378 (732)
T ss_pred CCceEEEEecCccc--------------------------ccccCCcEEEEEHHHhhcccccchhhhHHHHHhccccCCE
Confidence 45566677665321 11233689999998775332211 1133457889
Q ss_pred EEEecchhhhhHhHHhHHHHHHHhhhcccccccccccccccccccccccccccccccCCCCCCCCceeEEEEEEecCCCc
Q 017196 201 LVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDP 280 (375)
Q Consensus 201 vIiDE~h~l~~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~~ 280 (375)
||+||||++.+..|...+ ..+.. ...+++|||+...-
T Consensus 379 II~DEvH~lpA~~fr~il----~~l~a---------------------------------------~~RLGLTATP~ReD 415 (732)
T TIGR00603 379 ILLDEVHVVPAAMFRRVL----TIVQA---------------------------------------HCKLGLTATLVRED 415 (732)
T ss_pred EEEEccccccHHHHHHHH----HhcCc---------------------------------------CcEEEEeecCcccC
Confidence 999999999877765433 33322 12599999986422
Q ss_pred hhhh-ccccCCCeEEecCCccccCcccceeE--------------------------EEeccCCCcHHHHHHHHHhc--C
Q 017196 281 NKLA-QLDLHHPLFLTTGETRYKLPERLESY--------------------------KLICESKLKPLYLVALLQSL--G 331 (375)
Q Consensus 281 ~~~~-~~~~~~~~~i~~~~~~~~~~~~i~~~--------------------------~~~~~~~~k~~~l~~ll~~~--~ 331 (375)
.... -.++..|........+......+..+ .....+..|...+..+++.. .
T Consensus 416 ~~~~~L~~LiGP~vye~~~~eLi~~G~LA~~~~~ev~v~~t~~~~~~yl~~~~~~k~~l~~~np~K~~~~~~Li~~he~~ 495 (732)
T TIGR00603 416 DKITDLNFLIGPKLYEANWMELQKKGFIANVQCAEVWCPMTPEFYREYLRENSRKRMLLYVMNPNKFRACQFLIRFHEQR 495 (732)
T ss_pred CchhhhhhhcCCeeeecCHHHHHhCCccccceEEEEEecCCHHHHHHHHHhcchhhhHHhhhChHHHHHHHHHHHHHhhc
Confidence 1111 11223344333221110000011100 01112334566666677755 5
Q ss_pred CCeEEEEcCChhhHHHHHHHHHHhcCCcceEEeccccccccccC
Q 017196 332 EEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRR 375 (375)
Q Consensus 332 ~~k~lIF~~s~~~a~~l~~~L~~~g~~~~~~~~lh~~~~~~~R~ 375 (375)
++++||||+++..++.+++.|. +..+||++++.+|.
T Consensus 496 g~kiLVF~~~~~~l~~~a~~L~--------~~~I~G~ts~~ER~ 531 (732)
T TIGR00603 496 GDKIIVFSDNVFALKEYAIKLG--------KPFIYGPTSQQERM 531 (732)
T ss_pred CCeEEEEeCCHHHHHHHHHHcC--------CceEECCCCHHHHH
Confidence 6799999999999999998773 45689999999883
No 73
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.87 E-value=2e-21 Score=197.21 Aligned_cols=278 Identities=20% Similarity=0.222 Sum_probs=194.4
Q ss_pred CCCCCHHHHHHHHhCCCCCccHhhHHHHHHhhCCCCCCCCEEEECCCCCchHHHhHHHHHHHhhhccc-------CCceE
Q 017196 32 LPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAV-------RCLRA 104 (375)
Q Consensus 32 ~~~l~~~i~~~l~~~g~~~~~~~Q~~~~~~~~~~~~~~~~~ii~a~TGsGKTl~~~l~il~~l~~~~~-------~~~~~ 104 (375)
+..++.+-..++ .|...++++|.......+. ...|+++|||||+|||..+++.+++.+..+.. ..+++
T Consensus 293 iselP~Wnq~aF--~g~~sLNrIQS~v~daAl~---~~EnmLlCAPTGaGKTNVAvLtiLqel~~h~r~dgs~nl~~fKI 367 (1674)
T KOG0951|consen 293 ISELPKWNQPAF--FGKQSLNRIQSKVYDAALR---GDENMLLCAPTGAGKTNVAVLTILQELGNHLREDGSVNLAPFKI 367 (1674)
T ss_pred ecCCcchhhhhc--ccchhhhHHHHHHHHHHhc---CcCcEEEeccCCCCchHHHHHHHHHHHhcccccccceecccceE
Confidence 334777777777 4677899999998766553 56799999999999999999999999976532 34589
Q ss_pred EEEcccHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcCCCcEEEeCcHHHH
Q 017196 105 LVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLM 184 (375)
Q Consensus 105 lil~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiV~Tp~~l~ 184 (375)
+|++|..+|++++...+.+....+|+.|...+|+.....+ -..+.+|+||||++-
T Consensus 368 VYIAPmKaLvqE~VgsfSkRla~~GI~V~ElTgD~~l~~~------------------------qieeTqVIV~TPEK~- 422 (1674)
T KOG0951|consen 368 VYIAPMKALVQEMVGSFSKRLAPLGITVLELTGDSQLGKE------------------------QIEETQVIVTTPEKW- 422 (1674)
T ss_pred EEEeeHHHHHHHHHHHHHhhccccCcEEEEecccccchhh------------------------hhhcceeEEeccchh-
Confidence 9999999999999999999999999999999998754332 124569999999985
Q ss_pred HHHhh-cCCCC-CCCccEEEEecchhhhhHhHHhHHHHHHHhhhcccccccccccccccccccccccccccccccCCCCC
Q 017196 185 DHINA-TRGFT-LEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDK 262 (375)
Q Consensus 185 ~~l~~-~~~~~-~~~~~~vIiDE~h~l~~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (375)
+.+.+ .+... ..-++++|+||+|.+.+ ..++.++.|..........
T Consensus 423 DiITRk~gdraY~qlvrLlIIDEIHLLhD-dRGpvLESIVaRt~r~ses------------------------------- 470 (1674)
T KOG0951|consen 423 DIITRKSGDRAYEQLVRLLIIDEIHLLHD-DRGPVLESIVARTFRRSES------------------------------- 470 (1674)
T ss_pred hhhhcccCchhHHHHHHHHhhhhhhhccc-ccchHHHHHHHHHHHHhhh-------------------------------
Confidence 44443 22222 44678999999996644 4466677776654442210
Q ss_pred CCCceeEEEEEEecCCC--chhhhccccCCCeEEecCCccccCcccceeEEEeccCCCcHHH--------HHHHHHhcCC
Q 017196 263 PYPRLVKMVLSATLTQD--PNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLY--------LVALLQSLGE 332 (375)
Q Consensus 263 ~~~~~q~i~~SATl~~~--~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~k~~~--------l~~ll~~~~~ 332 (375)
......++++|||+|+- +..+.+-.. +-....+.+ ..|..+++.++-+........ ....+.....
T Consensus 471 ~~e~~RlVGLSATLPNy~DV~~Fl~v~~--~glf~fd~s--yRpvPL~qq~Igi~ek~~~~~~qamNe~~yeKVm~~agk 546 (1674)
T KOG0951|consen 471 TEEGSRLVGLSATLPNYEDVASFLRVDP--EGLFYFDSS--YRPVPLKQQYIGITEKKPLKRFQAMNEACYEKVLEHAGK 546 (1674)
T ss_pred cccCceeeeecccCCchhhhHHHhccCc--ccccccCcc--cCcCCccceEeccccCCchHHHHHHHHHHHHHHHHhCCC
Confidence 00145689999999963 333322221 111222222 346678888877765544333 2233444456
Q ss_pred CeEEEEcCChhhHHHHHHHHHHh-------------cC---------------------CcceEEeccccccccccC
Q 017196 333 EKCIVFTSSVESTHRLCTLLNHF-------------GE---------------------LRIKIKEYSGLQRQSVRR 375 (375)
Q Consensus 333 ~k~lIF~~s~~~a~~l~~~L~~~-------------g~---------------------~~~~~~~lh~~~~~~~R~ 375 (375)
+++|||+.|++++-++|+.++.. +. ..+.+.+.|+||++.+|+
T Consensus 547 ~qVLVFVHsRkET~ktA~aIRd~~le~dtls~fmre~s~s~eilrtea~~~kn~dLkdLLpygfaIHhAGl~R~dR~ 623 (1674)
T KOG0951|consen 547 NQVLVFVHSRKETAKTARAIRDKALEEDTLSRFMREDSASREILRTEAGQAKNPDLKDLLPYGFAIHHAGLNRKDRE 623 (1674)
T ss_pred CcEEEEEEechHHHHHHHHHHHHHhhhhHHHHHHhcccchhhhhhhhhhcccChhHHHHhhccceeeccCCCcchHH
Confidence 79999999999999999887721 10 134688999999999984
No 74
>PRK13766 Hef nuclease; Provisional
Probab=99.87 E-value=2.2e-20 Score=195.64 Aligned_cols=133 Identities=23% Similarity=0.290 Sum_probs=106.3
Q ss_pred CCccHhhHHHHHHhhCCCCCCCCEEEECCCCCchHHHhHHHHHHHhhhcccCCceEEEEcccHHHHHHHHHHHHHhcccc
Q 017196 49 SSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAV 128 (375)
Q Consensus 49 ~~~~~~Q~~~~~~~~~~~~~~~~~ii~a~TGsGKTl~~~l~il~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~ 128 (375)
.+|++||.++...++. +|+++++|||+|||++|++++...+.. .+.++|||+||++|+.|+.+.++.++...
T Consensus 14 ~~~r~yQ~~~~~~~l~-----~n~lv~~ptG~GKT~~a~~~i~~~l~~---~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~ 85 (773)
T PRK13766 14 IEARLYQQLLAATALK-----KNTLVVLPTGLGKTAIALLVIAERLHK---KGGKVLILAPTKPLVEQHAEFFRKFLNIP 85 (773)
T ss_pred CCccHHHHHHHHHHhc-----CCeEEEcCCCccHHHHHHHHHHHHHHh---CCCeEEEEeCcHHHHHHHHHHHHHHhCCC
Confidence 4899999998776653 389999999999999999888887732 34589999999999999999999886544
Q ss_pred CceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcCCCcEEEeCcHHHHHHHhhcCCCCCCCccEEEEecchh
Q 017196 129 GLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDR 208 (375)
Q Consensus 129 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiV~Tp~~l~~~l~~~~~~~~~~~~~vIiDE~h~ 208 (375)
+.++..++|+....... .+..+++|+|+||+.+...+.. +.+.+.++++|||||||+
T Consensus 86 ~~~v~~~~g~~~~~~r~----------------------~~~~~~~iiv~T~~~l~~~l~~-~~~~~~~~~liVvDEaH~ 142 (773)
T PRK13766 86 EEKIVVFTGEVSPEKRA----------------------ELWEKAKVIVATPQVIENDLIA-GRISLEDVSLLIFDEAHR 142 (773)
T ss_pred CceEEEEeCCCCHHHHH----------------------HHHhCCCEEEECHHHHHHHHHc-CCCChhhCcEEEEECCcc
Confidence 45788888876544321 2334579999999999887766 457788999999999999
Q ss_pred hhhH
Q 017196 209 LLRE 212 (375)
Q Consensus 209 l~~~ 212 (375)
+...
T Consensus 143 ~~~~ 146 (773)
T PRK13766 143 AVGN 146 (773)
T ss_pred cccc
Confidence 8644
No 75
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=99.86 E-value=1.6e-20 Score=189.21 Aligned_cols=293 Identities=16% Similarity=0.133 Sum_probs=173.8
Q ss_pred CCCCCccHhhHHHHHHhhCCCCCCCCEEEECCCCCchHHHhHHHHHHHhhhcccCCceEEEEcccHHHHHHHHHHHHHhc
Q 017196 46 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIA 125 (375)
Q Consensus 46 ~g~~~~~~~Q~~~~~~~~~~~~~~~~~ii~a~TGsGKTl~~~l~il~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~ 125 (375)
+|. .|+++|..+.. . .++..++.++||+|||++|++|++.....+ ..++|++|+++||.|+...+..+.
T Consensus 67 lgl-rpydVQlig~l--~----l~~G~Iaem~TGeGKTLta~Lpa~l~aL~g----~~V~VVTpn~yLA~Rdae~m~~l~ 135 (762)
T TIGR03714 67 LGM-FPYDVQVLGAI--V----LHQGNIAEMKTGEGKTLTATMPLYLNALTG----KGAMLVTTNDYLAKRDAEEMGPVY 135 (762)
T ss_pred cCC-CccHHHHHHHH--H----hcCCceeEecCCcchHHHHHHHHHHHhhcC----CceEEeCCCHHHHHHHHHHHHHHH
Confidence 465 66777766542 2 233479999999999999999988776654 259999999999999999999999
Q ss_pred cccCceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcCCCcEEEeCcHHH-HHHHhhc-----CCCCCCCcc
Q 017196 126 PAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRL-MDHINAT-----RGFTLEHLC 199 (375)
Q Consensus 126 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiV~Tp~~l-~~~l~~~-----~~~~~~~~~ 199 (375)
...|+++...+++...... +...+....+++|++|||+.| .++++.. ....++.+.
T Consensus 136 ~~LGLsv~~~~~~s~~~~~------------------~~~~rr~~y~~dIvygTp~~LgfDyLrD~l~~~~~~~~~r~l~ 197 (762)
T TIGR03714 136 EWLGLTVSLGVVDDPDEEY------------------DANEKRKIYNSDIVYTTNSALGFDYLIDNLASNKEGKFLRPFN 197 (762)
T ss_pred hhcCCcEEEEECCCCcccc------------------CHHHHHHhCCCCEEEECchhhhhhHHHHHhhcchhhcccccCc
Confidence 9999999887765321100 000112235689999999999 5666431 224478899
Q ss_pred EEEEecchhhhhH----------------hHHhHHHHHHHhhhccc------cccccccccc----ccccccccc-----
Q 017196 200 YLVVDETDRLLRE----------------AYQAWLPTVLQLTRSDN------ENRFSDASTF----LPSAFGSLK----- 248 (375)
Q Consensus 200 ~vIiDE~h~l~~~----------------~~~~~l~~i~~~l~~~~------~~~~~~~~~~----~~~~~~~~~----- 248 (375)
++|+||||.++-. ........+...+.... ..+...++.. .++++ +..
T Consensus 198 ~~IVDEaDsILiDeartpliisg~~~~~~~~y~~~~~~v~~l~~~~dy~~d~~~~~v~lt~~G~~~~e~~~-~~~~l~~~ 276 (762)
T TIGR03714 198 YVIVDEVDSVLLDSAQTPLVISGAPRVQSNLYHIADTFVRTLKEDVDYIFKKDKKEVWLTDKGIEKAEQYF-KIDNLYSE 276 (762)
T ss_pred EEEEecHhhHhhccCcCCeeeeCCCccchHHHHHHHHHHHhcCCCCCeEEEcCCCeeeecHhHHHHHHHHc-CCCccCCh
Confidence 9999999999321 11222223333332210 0000000000 00000 000
Q ss_pred --------------------------------cccccccccCCC--------------------------------CCCC
Q 017196 249 --------------------------------TIRRCGVERGFK--------------------------------DKPY 264 (375)
Q Consensus 249 --------------------------------~~~~~~~~~~~~--------------------------------~~~~ 264 (375)
.+.+-.+++.-. |.-+
T Consensus 277 ~~~~~~~~i~~al~A~~~~~~d~dYiV~~~~v~ivD~~TGr~~~gr~~~~GLhQaieaKE~v~i~~e~~t~a~It~qn~F 356 (762)
T TIGR03714 277 EYFELVRHINLALRAHYLFKRNKDYVVTNGEVVLLDRITGRLLEGTKLQSGIHQAIEAKEHVELSKETRAMASITYQNLF 356 (762)
T ss_pred hhHHHHHHHHHHHHHHHHHhcCCceEEECCEEEEEECCCCcCCCCCCcchHHHHHHHhhcCCCCCCCceeeeeeeHHHHH
Confidence 011111111100 0001
Q ss_pred Cc-eeEEEEEEecCCCchhhhccccCCCeEEecCCccccCcccceeEEEeccCCCcHHHHHHHHHh--cCCCeEEEEcCC
Q 017196 265 PR-LVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQS--LGEEKCIVFTSS 341 (375)
Q Consensus 265 ~~-~q~i~~SATl~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~--~~~~k~lIF~~s 341 (375)
.. .++.+||.|......++...+ +-..+.+........ .-..-.+.+....|...+.+.+++ ..+.++||||+|
T Consensus 357 r~Y~kl~GmTGTa~~~~~Ef~~iY--~l~v~~IPt~kp~~r-~d~~d~i~~~~~~K~~ai~~~i~~~~~~~~pvLIft~s 433 (762)
T TIGR03714 357 KMFNKLSGMTGTGKVAEKEFIETY--SLSVVKIPTNKPIIR-IDYPDKIYATLPEKLMATLEDVKEYHETGQPVLLITGS 433 (762)
T ss_pred hhCchhcccCCCChhHHHHHHHHh--CCCEEEcCCCCCeee-eeCCCeEEECHHHHHHHHHHHHHHHhhCCCCEEEEECc
Confidence 11 246677777654444554322 222232322221111 111123345566788888888876 356789999999
Q ss_pred hhhHHHHHHHHHHhcCCcceEEecccccccccc
Q 017196 342 VESTHRLCTLLNHFGELRIKIKEYSGLQRQSVR 374 (375)
Q Consensus 342 ~~~a~~l~~~L~~~g~~~~~~~~lh~~~~~~~R 374 (375)
++.++.++..|...| +++..+||++.+++|
T Consensus 434 ~~~se~ls~~L~~~g---i~~~~L~a~~~~~E~ 463 (762)
T TIGR03714 434 VEMSEIYSELLLREG---IPHNLLNAQNAAKEA 463 (762)
T ss_pred HHHHHHHHHHHHHCC---CCEEEecCCChHHHH
Confidence 999999999999554 999999999998776
No 76
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=99.85 E-value=4.4e-20 Score=187.61 Aligned_cols=131 Identities=22% Similarity=0.262 Sum_probs=104.8
Q ss_pred CCCCCccHhhHHHHHHhhCCCCCCCCEEEECCCCCchHHHhHHHHHHHhhhcccCCceEEEEcccHHHHHHHHHHHHHhc
Q 017196 46 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIA 125 (375)
Q Consensus 46 ~g~~~~~~~Q~~~~~~~~~~~~~~~~~ii~a~TGsGKTl~~~l~il~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~ 125 (375)
+|. .|+++|..+...+. .|+ +..+.||+|||+++++|++.....+ ..+.|++||++||.|.+..+..+.
T Consensus 75 ~g~-~p~~vQl~~~~~l~----~G~--Iaem~TGeGKTL~a~lp~~l~al~G----~~v~VvTpt~~LA~qd~e~~~~l~ 143 (790)
T PRK09200 75 LGM-RPYDVQLIGALVLH----EGN--IAEMQTGEGKTLTATMPLYLNALEG----KGVHLITVNDYLAKRDAEEMGQVY 143 (790)
T ss_pred hCC-CCchHHHHhHHHHc----CCc--eeeecCCCcchHHHHHHHHHHHHcC----CCeEEEeCCHHHHHHHHHHHHHHH
Confidence 576 99999999864332 454 9999999999999999998666543 469999999999999999999999
Q ss_pred cccCceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcCCCcEEEeCcHHH-HHHHhhcC-----CCCCCCcc
Q 017196 126 PAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRL-MDHINATR-----GFTLEHLC 199 (375)
Q Consensus 126 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiV~Tp~~l-~~~l~~~~-----~~~~~~~~ 199 (375)
...|+++..+.|+.+...+. +...+++|++|||+.+ .++++..- ....+.+.
T Consensus 144 ~~lGl~v~~i~g~~~~~~~r----------------------~~~y~~dIvygT~~~l~fDyLrd~~~~~~~~~~~r~~~ 201 (790)
T PRK09200 144 EFLGLTVGLNFSDIDDASEK----------------------KAIYEADIIYTTNSELGFDYLRDNLADSKEDKVQRPLN 201 (790)
T ss_pred hhcCCeEEEEeCCCCcHHHH----------------------HHhcCCCEEEECCccccchhHHhccccchhhhcccccc
Confidence 99999999999987632221 1234589999999998 56555421 13468899
Q ss_pred EEEEecchhh
Q 017196 200 YLVVDETDRL 209 (375)
Q Consensus 200 ~vIiDE~h~l 209 (375)
++||||||.+
T Consensus 202 ~~IvDEaDsi 211 (790)
T PRK09200 202 YAIIDEIDSI 211 (790)
T ss_pred eEEEeccccc
Confidence 9999999999
No 77
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=99.85 E-value=1.1e-19 Score=171.12 Aligned_cols=133 Identities=20% Similarity=0.262 Sum_probs=112.0
Q ss_pred CCCccHhhHHHHHHhhCCCCCCCCEEEECCCCCchHHHhHHHHHHHhhhcccCCceEEEEcccHHHHHHHHHHHHHhccc
Q 017196 48 ISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPA 127 (375)
Q Consensus 48 ~~~~~~~Q~~~~~~~~~~~~~~~~~ii~a~TGsGKTl~~~l~il~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~ 127 (375)
..+++.||.......+ .+|.+++.|||.|||..+++.+...+.+.+ + ++|+++||+-|+.|....++++...
T Consensus 13 ~ie~R~YQ~~i~a~al-----~~NtLvvlPTGLGKT~IA~~V~~~~l~~~~--~-kvlfLAPTKPLV~Qh~~~~~~v~~i 84 (542)
T COG1111 13 TIEPRLYQLNIAAKAL-----FKNTLVVLPTGLGKTFIAAMVIANRLRWFG--G-KVLFLAPTKPLVLQHAEFCRKVTGI 84 (542)
T ss_pred cccHHHHHHHHHHHHh-----hcCeEEEecCCccHHHHHHHHHHHHHHhcC--C-eEEEecCCchHHHHHHHHHHHHhCC
Confidence 3478889988766555 469999999999999999998888888763 3 7999999999999999999998876
Q ss_pred cCceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcCCCcEEEeCcHHHHHHHhhcCCCCCCCccEEEEecch
Q 017196 128 VGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETD 207 (375)
Q Consensus 128 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiV~Tp~~l~~~l~~~~~~~~~~~~~vIiDE~h 207 (375)
-.-.++.++|..........| ....|+|+||+.+.+-+.. +.+++.++.++|+||||
T Consensus 85 p~~~i~~ltGev~p~~R~~~w----------------------~~~kVfvaTPQvveNDl~~-Grid~~dv~~lifDEAH 141 (542)
T COG1111 85 PEDEIAALTGEVRPEEREELW----------------------AKKKVFVATPQVVENDLKA-GRIDLDDVSLLIFDEAH 141 (542)
T ss_pred ChhheeeecCCCChHHHHHHH----------------------hhCCEEEeccHHHHhHHhc-CccChHHceEEEechhh
Confidence 566788999988777665433 3448999999999999988 66999999999999999
Q ss_pred hhhh
Q 017196 208 RLLR 211 (375)
Q Consensus 208 ~l~~ 211 (375)
+-..
T Consensus 142 RAvG 145 (542)
T COG1111 142 RAVG 145 (542)
T ss_pred hccC
Confidence 8743
No 78
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=99.84 E-value=7.9e-20 Score=178.35 Aligned_cols=244 Identities=23% Similarity=0.264 Sum_probs=152.2
Q ss_pred CCccHhhHHHHHHhhCCCCCCCCEEEECCCCCchHHHhHHHHHHHhhhcccCCceEEEEcccHHHHHHHHHHHHHhcccc
Q 017196 49 SSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAV 128 (375)
Q Consensus 49 ~~~~~~Q~~~~~~~~~~~~~~~~~ii~a~TGsGKTl~~~l~il~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~ 128 (375)
..|+++|.+|++.+......++.+++++|||+|||..++..+. .+.. .+|||+|+.+|+.||.+.+.......
T Consensus 35 ~~lr~yQ~~al~a~~~~~~~~~~gvivlpTGaGKT~va~~~~~-~~~~------~~Lvlv~~~~L~~Qw~~~~~~~~~~~ 107 (442)
T COG1061 35 FELRPYQEEALDALVKNRRTERRGVIVLPTGAGKTVVAAEAIA-ELKR------STLVLVPTKELLDQWAEALKKFLLLN 107 (442)
T ss_pred CCCcHHHHHHHHHHHhhcccCCceEEEeCCCCCHHHHHHHHHH-HhcC------CEEEEECcHHHHHHHHHHHHHhcCCc
Confidence 3799999999999887555588899999999999998755443 2222 39999999999999997777665431
Q ss_pred CceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcCCCcEEEeCcHHHHHHHhhcCCCCCCCccEEEEecchh
Q 017196 129 GLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDR 208 (375)
Q Consensus 129 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiV~Tp~~l~~~l~~~~~~~~~~~~~vIiDE~h~ 208 (375)
..++.+.|+... ... ..|+|+|.+.+...- ....+..+++++||+||||+
T Consensus 108 -~~~g~~~~~~~~---------------------------~~~-~~i~vat~qtl~~~~-~l~~~~~~~~~liI~DE~Hh 157 (442)
T COG1061 108 -DEIGIYGGGEKE---------------------------LEP-AKVTVATVQTLARRQ-LLDEFLGNEFGLIIFDEVHH 157 (442)
T ss_pred -cccceecCceec---------------------------cCC-CcEEEEEhHHHhhhh-hhhhhcccccCEEEEEcccc
Confidence 234444444310 011 369999988876642 10124455899999999999
Q ss_pred hhhHhHHhHHHHHHHhhhcccccccccccccccccccccccccccccccCCCCCCCCceeEEEEEEecCCCchhhhcc--
Q 017196 209 LLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQL-- 286 (375)
Q Consensus 209 l~~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~~~~~~~~-- 286 (375)
+.+..|......+....+ ++++|||++..-......
T Consensus 158 ~~a~~~~~~~~~~~~~~~------------------------------------------~LGLTATp~R~D~~~~~~l~ 195 (442)
T COG1061 158 LPAPSYRRILELLSAAYP------------------------------------------RLGLTATPEREDGGRIGDLF 195 (442)
T ss_pred CCcHHHHHHHHhhhcccc------------------------------------------eeeeccCceeecCCchhHHH
Confidence 998887554443332211 599999987321111111
Q ss_pred ccCCCeEEecCCcc-----ccCcccceeEEE------------------------------------eccCCCcHHHHHH
Q 017196 287 DLHHPLFLTTGETR-----YKLPERLESYKL------------------------------------ICESKLKPLYLVA 325 (375)
Q Consensus 287 ~~~~~~~i~~~~~~-----~~~~~~i~~~~~------------------------------------~~~~~~k~~~l~~ 325 (375)
.+..+......... ...+..+..... ......+...+..
T Consensus 196 ~~~g~~vy~~~~~~li~~g~Lap~~~~~i~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (442)
T COG1061 196 DLIGPIVYEVSLKELIDEGYLAPYKYVEIKVTLTEDEEREYAKESARFRELLRARGTLRAENEARRIAIASERKIAAVRG 275 (442)
T ss_pred HhcCCeEeecCHHHHHhCCCccceEEEEEEeccchHHHHHhhhhhhhhhhhhhhhhhhhHHHHHHHHhhccHHHHHHHHH
Confidence 11122222222110 000001111110 0011222333344
Q ss_pred HHHhc-CCCeEEEEcCChhhHHHHHHHHHHhcCCcceEEeccccccccccC
Q 017196 326 LLQSL-GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRR 375 (375)
Q Consensus 326 ll~~~-~~~k~lIF~~s~~~a~~l~~~L~~~g~~~~~~~~lh~~~~~~~R~ 375 (375)
++... .+.+++|||.++.+++.++..+...| . +..++|+++..+|.
T Consensus 276 ~~~~~~~~~~~lif~~~~~~a~~i~~~~~~~~---~-~~~it~~t~~~eR~ 322 (442)
T COG1061 276 LLLKHARGDKTLIFASDVEHAYEIAKLFLAPG---I-VEAITGETPKEERE 322 (442)
T ss_pred HHHHhcCCCcEEEEeccHHHHHHHHHHhcCCC---c-eEEEECCCCHHHHH
Confidence 44444 36699999999999999999998544 5 88999999999883
No 79
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=99.83 E-value=3.6e-19 Score=154.70 Aligned_cols=188 Identities=34% Similarity=0.549 Sum_probs=141.8
Q ss_pred hCCCCCccHhhHHHHHHhhCCCCCC-CCEEEECCCCCchHHHhHHHHHHHhhhcccCCceEEEEcccHHHHHHHHHHHHH
Q 017196 45 NMGISSLFPVQVAVWQETIGPGLFE-RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAA 123 (375)
Q Consensus 45 ~~g~~~~~~~Q~~~~~~~~~~~~~~-~~~ii~a~TGsGKTl~~~l~il~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~ 123 (375)
..++.+|+++|.++++.+.. . +++++.++||+|||.+++.+++..+.... ..+++|++|+.+++.|+...+..
T Consensus 3 ~~~~~~~~~~Q~~~~~~~~~----~~~~~~i~~~~GsGKT~~~~~~~~~~~~~~~--~~~~l~~~p~~~~~~~~~~~~~~ 76 (201)
T smart00487 3 KFGFEPLRPYQKEAIEALLS----GLRDVILAAPTGSGKTLAALLPALEALKRGK--GKRVLVLVPTRELAEQWAEELKK 76 (201)
T ss_pred ccCCCCCCHHHHHHHHHHHc----CCCcEEEECCCCCchhHHHHHHHHHHhcccC--CCcEEEEeCCHHHHHHHHHHHHH
Confidence 35677999999999988874 4 88999999999999999998888887652 34799999999999999999998
Q ss_pred hccccCceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcCC-CcEEEeCcHHHHHHHhhcCCCCCCCccEEE
Q 017196 124 IAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSA-VDILVATPGRLMDHINATRGFTLEHLCYLV 202 (375)
Q Consensus 124 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~IiV~Tp~~l~~~l~~~~~~~~~~~~~vI 202 (375)
+............++...... ......+ .+|+++|++.+.+.+.... .....++++|
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~v~~~t~~~l~~~~~~~~-~~~~~~~~iI 134 (201)
T smart00487 77 LGPSLGLKVVGLYGGDSKREQ---------------------LRKLESGKTDILVTTPGRLLDLLENDL-LELSNVDLVI 134 (201)
T ss_pred HhccCCeEEEEEeCCcchHHH---------------------HHHHhcCCCCEEEeChHHHHHHHHcCC-cCHhHCCEEE
Confidence 876544233334444332222 1223344 4999999999999888733 5677889999
Q ss_pred EecchhhhhHhHHhHHHHHHHhhhcccccccccccccccccccccccccccccccCCCCCCCCceeEEEEEEecCCCchh
Q 017196 203 VDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNK 282 (375)
Q Consensus 203 iDE~h~l~~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~~~~ 282 (375)
+||+|.+....+...+..++..++. ..+++++|||++.....
T Consensus 135 iDE~h~~~~~~~~~~~~~~~~~~~~--------------------------------------~~~~v~~saT~~~~~~~ 176 (201)
T smart00487 135 LDEAHRLLDGGFGDQLEKLLKLLPK--------------------------------------NVQLLLLSATPPEEIEN 176 (201)
T ss_pred EECHHHHhcCCcHHHHHHHHHhCCc--------------------------------------cceEEEEecCCchhHHH
Confidence 9999999764555666666665533 45689999999988888
Q ss_pred hhccccCCCeEEecCC
Q 017196 283 LAQLDLHHPLFLTTGE 298 (375)
Q Consensus 283 ~~~~~~~~~~~i~~~~ 298 (375)
....+..+...+....
T Consensus 177 ~~~~~~~~~~~~~~~~ 192 (201)
T smart00487 177 LLELFLNDPVFIDVGP 192 (201)
T ss_pred HHHHhcCCCEEEeCCc
Confidence 8877777666665554
No 80
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=99.83 E-value=2.1e-19 Score=182.52 Aligned_cols=131 Identities=25% Similarity=0.328 Sum_probs=106.5
Q ss_pred CCCCCccHhhHHHHHHhhCCCCCCCCEEEECCCCCchHHHhHHHHHHHhhhcccCCceEEEEcccHHHHHHHHHHHHHhc
Q 017196 46 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIA 125 (375)
Q Consensus 46 ~g~~~~~~~Q~~~~~~~~~~~~~~~~~ii~a~TGsGKTl~~~l~il~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~ 125 (375)
+|. .|+++|...- + .-++.-+..++||+|||++|++|++.....+ ..+.|++||++||.|.+..+..+.
T Consensus 79 lg~-~~ydvQliGg---~---~Lh~G~Iaem~TGeGKTL~a~Lpa~~~al~G----~~V~VvTpn~yLA~qd~e~m~~l~ 147 (896)
T PRK13104 79 LGL-RHFDVQLIGG---M---VLHEGNIAEMRTGEGKTLVATLPAYLNAISG----RGVHIVTVNDYLAKRDSQWMKPIY 147 (896)
T ss_pred cCC-CcchHHHhhh---h---hhccCccccccCCCCchHHHHHHHHHHHhcC----CCEEEEcCCHHHHHHHHHHHHHHh
Confidence 575 8999997652 2 2344458999999999999999999877654 259999999999999999999999
Q ss_pred cccCceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcCCCcEEEeCcHHH-HHHHhhcCCCCC-----CCcc
Q 017196 126 PAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRL-MDHINATRGFTL-----EHLC 199 (375)
Q Consensus 126 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiV~Tp~~l-~~~l~~~~~~~~-----~~~~ 199 (375)
...|+++..++|+.+...... .-.++|++|||+.| .++++....+.+ +.+.
T Consensus 148 ~~lGLtv~~i~gg~~~~~r~~-----------------------~y~~dIvygT~grlgfDyLrd~~~~~~~~~v~r~l~ 204 (896)
T PRK13104 148 EFLGLTVGVIYPDMSHKEKQE-----------------------AYKADIVYGTNNEYGFDYLRDNMAFSLTDKVQRELN 204 (896)
T ss_pred cccCceEEEEeCCCCHHHHHH-----------------------HhCCCEEEECChhhhHHHHhcCCccchHhhhccccc
Confidence 999999999999876554421 22579999999999 999987434444 6899
Q ss_pred EEEEecchhhh
Q 017196 200 YLVVDETDRLL 210 (375)
Q Consensus 200 ~vIiDE~h~l~ 210 (375)
++||||||.++
T Consensus 205 ~~IvDEaDsiL 215 (896)
T PRK13104 205 FAIVDEVDSIL 215 (896)
T ss_pred eEEeccHhhhh
Confidence 99999999993
No 81
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=99.83 E-value=4.7e-19 Score=173.28 Aligned_cols=263 Identities=18% Similarity=0.196 Sum_probs=181.8
Q ss_pred CCHHH-HHHHHhCCCCCccHhhHHHHHHhhCCCCCC--CCEEEECCCCCchHHHhHHHHHHHhhhcccCCceEEEEcccH
Q 017196 35 LDPRL-KVALQNMGISSLFPVQVAVWQETIGPGLFE--RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTR 111 (375)
Q Consensus 35 l~~~i-~~~l~~~g~~~~~~~Q~~~~~~~~~~~~~~--~~~ii~a~TGsGKTl~~~l~il~~l~~~~~~~~~~lil~Pt~ 111 (375)
.+..+ .+.+..+.| +||..|++++.++..-+.+. .+=++++..|||||.+++++++..+..+ .++..++||-
T Consensus 247 ~~~~l~~~~~~~LPF-~LT~aQ~~vi~EI~~Dl~~~~~M~RLlQGDVGSGKTvVA~laml~ai~~G----~Q~ALMAPTE 321 (677)
T COG1200 247 ANGELLAKFLAALPF-KLTNAQKRVIKEILADLASPVPMNRLLQGDVGSGKTVVALLAMLAAIEAG----YQAALMAPTE 321 (677)
T ss_pred ccHHHHHHHHHhCCC-CccHHHHHHHHHHHhhhcCchhhHHHhccCcCCCHHHHHHHHHHHHHHcC----CeeEEeccHH
Confidence 34444 444577898 99999999999998666555 4669999999999999999999888654 4799999999
Q ss_pred HHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcCC-CcEEEeCcHHHHHHHhhc
Q 017196 112 DLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSA-VDILVATPGRLMDHINAT 190 (375)
Q Consensus 112 ~L~~Q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~IiV~Tp~~l~~~l~~~ 190 (375)
-||+|-+..+.++++..+++|..++|......... ....+.+| .+|+|||.. ++..
T Consensus 322 ILA~QH~~~~~~~l~~~~i~V~lLtG~~kgk~r~~------------------~l~~l~~G~~~ivVGTHA----LiQd- 378 (677)
T COG1200 322 ILAEQHYESLRKWLEPLGIRVALLTGSLKGKARKE------------------ILEQLASGEIDIVVGTHA----LIQD- 378 (677)
T ss_pred HHHHHHHHHHHHHhhhcCCeEEEeecccchhHHHH------------------HHHHHhCCCCCEEEEcch----hhhc-
Confidence 99999999999999999999999999877665532 33344444 999999954 3333
Q ss_pred CCCCCCCccEEEEecchhhhhHhHHhHHHHHHHhhhcccccccccccccccccccccccccccccccCCCCCCCCceeEE
Q 017196 191 RGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKM 270 (375)
Q Consensus 191 ~~~~~~~~~~vIiDE~h~l~~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i 270 (375)
...+.++.++|+||-|++.-.... .+.+.-.. .+-.+
T Consensus 379 -~V~F~~LgLVIiDEQHRFGV~QR~----~L~~KG~~--------------------------------------~Ph~L 415 (677)
T COG1200 379 -KVEFHNLGLVIIDEQHRFGVHQRL----ALREKGEQ--------------------------------------NPHVL 415 (677)
T ss_pred -ceeecceeEEEEeccccccHHHHH----HHHHhCCC--------------------------------------CCcEE
Confidence 477889999999999988555432 12222111 11279
Q ss_pred EEEEecCCCchhhhccccCCCeEEecCCccccCcccceeEEEeccCCCcHHHHHHHHHh--cCCCeEEEEcCChhh----
Q 017196 271 VLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQS--LGEEKCIVFTSSVES---- 344 (375)
Q Consensus 271 ~~SATl~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~--~~~~k~lIF~~s~~~---- 344 (375)
.||||+.+....+. .+.+-..-.++ .+|...+.....+-...+...+++.++. ..+.++.+.|+-+++
T Consensus 416 vMTATPIPRTLAlt--~fgDldvS~Id----ElP~GRkpI~T~~i~~~~~~~v~e~i~~ei~~GrQaY~VcPLIeESE~l 489 (677)
T COG1200 416 VMTATPIPRTLALT--AFGDLDVSIID----ELPPGRKPITTVVIPHERRPEVYERIREEIAKGRQAYVVCPLIEESEKL 489 (677)
T ss_pred EEeCCCchHHHHHH--Hhccccchhhc----cCCCCCCceEEEEeccccHHHHHHHHHHHHHcCCEEEEEeccccccccc
Confidence 99999876443332 22222221122 2233333333223333344444444443 267799999988775
Q ss_pred ----HHHHHHHHHHhcCCcceEEeccccccccccC
Q 017196 345 ----THRLCTLLNHFGELRIKIKEYSGLQRQSVRR 375 (375)
Q Consensus 345 ----a~~l~~~L~~~g~~~~~~~~lh~~~~~~~R~ 375 (375)
|.++++.|+... .++++..+||+|+..+++
T Consensus 490 ~l~~a~~~~~~L~~~~-~~~~vgL~HGrm~~~eKd 523 (677)
T COG1200 490 ELQAAEELYEELKSFL-PELKVGLVHGRMKPAEKD 523 (677)
T ss_pred hhhhHHHHHHHHHHHc-ccceeEEEecCCChHHHH
Confidence 557777887443 567899999999987763
No 82
>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=99.82 E-value=1e-19 Score=187.58 Aligned_cols=261 Identities=19% Similarity=0.213 Sum_probs=184.1
Q ss_pred HHHHH-HhCCCCCccHhhHHHHHHhhCCCCCCCCEEEECCCCCchHHHhHHHHHHHhhhcccCCceEEEEcccHHHHHHH
Q 017196 39 LKVAL-QNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQV 117 (375)
Q Consensus 39 i~~~l-~~~g~~~~~~~Q~~~~~~~~~~~~~~~~~ii~a~TGsGKTl~~~l~il~~l~~~~~~~~~~lil~Pt~~L~~Q~ 117 (375)
....+ ..+|...+++-|.+|+..++ .|+|+.|.+|||.||++||.+|++- .+.-+|+|.|..+|.+.+
T Consensus 252 ~~~~l~~~Fg~~~FR~~Q~eaI~~~l----~Gkd~fvlmpTG~GKSLCYQlPA~l-------~~gitvVISPL~SLm~DQ 320 (941)
T KOG0351|consen 252 LELLLKEVFGHKGFRPNQLEAINATL----SGKDCFVLMPTGGGKSLCYQLPALL-------LGGVTVVISPLISLMQDQ 320 (941)
T ss_pred HHHHHHHHhccccCChhHHHHHHHHH----cCCceEEEeecCCceeeEeeccccc-------cCCceEEeccHHHHHHHH
Confidence 44444 45899999999999987555 8999999999999999999999864 223699999999999877
Q ss_pred HHHHHHhccccCceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcC---CCcEEEeCcHHHHHHHhhc-CCC
Q 017196 118 KDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQS---AVDILVATPGRLMDHINAT-RGF 193 (375)
Q Consensus 118 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~IiV~Tp~~l~~~l~~~-~~~ 193 (375)
...+... ++....+.++........ .++.+.. .++|+--||+++...-.-. ...
T Consensus 321 v~~L~~~----~I~a~~L~s~q~~~~~~~------------------i~q~l~~~~~~ikilYvtPE~v~~~~~l~~~~~ 378 (941)
T KOG0351|consen 321 VTHLSKK----GIPACFLSSIQTAAERLA------------------ILQKLANGNPIIKILYVTPEKVVASEGLLESLA 378 (941)
T ss_pred HHhhhhc----CcceeeccccccHHHHHH------------------HHHHHhCCCCeEEEEEeCHHHhhcccchhhHHH
Confidence 7666433 788888988877654422 2223333 4899999999886533221 112
Q ss_pred CCCC---ccEEEEecchhhhhHh--HHhHHHHHHHhhhcccccccccccccccccccccccccccccccCCCCCCCCcee
Q 017196 194 TLEH---LCYLVVDETDRLLREA--YQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLV 268 (375)
Q Consensus 194 ~~~~---~~~vIiDE~h~l~~~~--~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q 268 (375)
++.. +.++||||||+...++ |++.+..+........ .+.
T Consensus 379 ~L~~~~~lal~vIDEAHCVSqWgHdFRp~Yk~l~~l~~~~~------------------------------------~vP 422 (941)
T KOG0351|consen 379 DLYARGLLALFVIDEAHCVSQWGHDFRPSYKRLGLLRIRFP------------------------------------GVP 422 (941)
T ss_pred hccCCCeeEEEEecHHHHhhhhcccccHHHHHHHHHHhhCC------------------------------------CCC
Confidence 3334 8899999999998774 6666665554433311 356
Q ss_pred EEEEEEecCCCchhhhcc--ccCCCeEEecCCccccCcccceeEEEeccCCCcHHHHHHHHHhc-CCCeEEEEcCChhhH
Q 017196 269 KMVLSATLTQDPNKLAQL--DLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSL-GEEKCIVFTSSVEST 345 (375)
Q Consensus 269 ~i~~SATl~~~~~~~~~~--~~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~-~~~k~lIF~~s~~~a 345 (375)
++.+|||-+..+.+-+-. .+.++..+..... +.++.-.+..-........+...++.+ +...+||||.++.+|
T Consensus 423 ~iALTATAT~~v~~DIi~~L~l~~~~~~~~sfn----R~NL~yeV~~k~~~~~~~~~~~~~~~~~~~~s~IIYC~sr~~c 498 (941)
T KOG0351|consen 423 FIALTATATERVREDVIRSLGLRNPELFKSSFN----RPNLKYEVSPKTDKDALLDILEESKLRHPDQSGIIYCLSRKEC 498 (941)
T ss_pred eEEeehhccHHHHHHHHHHhCCCCcceecccCC----CCCceEEEEeccCccchHHHHHHhhhcCCCCCeEEEeCCcchH
Confidence 999999998877655433 4456765544433 234433322222233344444445544 567899999999999
Q ss_pred HHHHHHHHHhcCCcceEEeccccccccccC
Q 017196 346 HRLCTLLNHFGELRIKIKEYSGLQRQSVRR 375 (375)
Q Consensus 346 ~~l~~~L~~~g~~~~~~~~lh~~~~~~~R~ 375 (375)
+.++..|+..| +.+..||+||+..+|.
T Consensus 499 e~vs~~L~~~~---~~a~~YHAGl~~~~R~ 525 (941)
T KOG0351|consen 499 EQVSAVLRSLG---KSAAFYHAGLPPKERE 525 (941)
T ss_pred HHHHHHHHHhc---hhhHhhhcCCCHHHHH
Confidence 99999999666 9999999999999984
No 83
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=99.82 E-value=5.7e-19 Score=176.99 Aligned_cols=132 Identities=25% Similarity=0.245 Sum_probs=106.5
Q ss_pred CCCCCccHhhHHHHHHhhCCCCCCCCEEEECCCCCchHHHhHHHHHHHhhhcccCCceEEEEcccHHHHHHHHHHHHHhc
Q 017196 46 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIA 125 (375)
Q Consensus 46 ~g~~~~~~~Q~~~~~~~~~~~~~~~~~ii~a~TGsGKTl~~~l~il~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~ 125 (375)
+|. .|++.|..+...+ ..| .+..++||+|||++|++|++.....+ ..+.|++||.+||.|.+..+..+.
T Consensus 53 lg~-~p~~vQlig~~~l----~~G--~Iaem~TGeGKTLva~lpa~l~aL~G----~~V~VvTpt~~LA~qdae~~~~l~ 121 (745)
T TIGR00963 53 LGM-RPFDVQLIGGIAL----HKG--KIAEMKTGEGKTLTATLPAYLNALTG----KGVHVVTVNDYLAQRDAEWMGQVY 121 (745)
T ss_pred hCC-CccchHHhhhhhh----cCC--ceeeecCCCccHHHHHHHHHHHHHhC----CCEEEEcCCHHHHHHHHHHHHHHh
Confidence 575 8999999885332 244 49999999999999999996444443 259999999999999999999999
Q ss_pred cccCceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcCCCcEEEeCcHHH-HHHHhhcC-----CCCCCCcc
Q 017196 126 PAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRL-MDHINATR-----GFTLEHLC 199 (375)
Q Consensus 126 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiV~Tp~~l-~~~l~~~~-----~~~~~~~~ 199 (375)
...|+++..+.|+.+..... ..-.++|++|||+.| .++++... .+.++.+.
T Consensus 122 ~~LGLsv~~i~g~~~~~~r~-----------------------~~y~~dIvyGT~~rlgfDyLrd~~~~~~~~~~~r~l~ 178 (745)
T TIGR00963 122 RFLGLSVGLILSGMSPEERR-----------------------EAYACDITYGTNNELGFDYLRDNMAHSKEEKVQRPFH 178 (745)
T ss_pred ccCCCeEEEEeCCCCHHHHH-----------------------HhcCCCEEEECCCchhhHHHhcccccchhhhhccccc
Confidence 99999999999987654332 123479999999999 88887642 24678999
Q ss_pred EEEEecchhhhh
Q 017196 200 YLVVDETDRLLR 211 (375)
Q Consensus 200 ~vIiDE~h~l~~ 211 (375)
++||||+|.++-
T Consensus 179 ~aIIDEaDs~LI 190 (745)
T TIGR00963 179 FAIIDEVDSILI 190 (745)
T ss_pred eeEeecHHHHhH
Confidence 999999999954
No 84
>PRK05580 primosome assembly protein PriA; Validated
Probab=99.80 E-value=5e-18 Score=173.62 Aligned_cols=128 Identities=23% Similarity=0.297 Sum_probs=100.5
Q ss_pred CccHhhHHHHHHhhCCCCCCCCEEEECCCCCchHHHhHHHHHHHhhhcccCCceEEEEcccHHHHHHHHHHHHHhccccC
Q 017196 50 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVG 129 (375)
Q Consensus 50 ~~~~~Q~~~~~~~~~~~~~~~~~ii~a~TGsGKTl~~~l~il~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~ 129 (375)
.|++.|.++++.+.... .++++++.++||||||.+|+.++...+..+ .++||++||++|+.|+++.+++.+ +
T Consensus 144 ~Lt~~Q~~ai~~i~~~~-~~~~~Ll~~~TGSGKT~v~l~~i~~~l~~g----~~vLvLvPt~~L~~Q~~~~l~~~f---g 215 (679)
T PRK05580 144 TLNPEQAAAVEAIRAAA-GFSPFLLDGVTGSGKTEVYLQAIAEVLAQG----KQALVLVPEIALTPQMLARFRARF---G 215 (679)
T ss_pred CCCHHHHHHHHHHHhcc-CCCcEEEECCCCChHHHHHHHHHHHHHHcC----CeEEEEeCcHHHHHHHHHHHHHHh---C
Confidence 58999999999987543 457899999999999999988877766543 479999999999999999998754 5
Q ss_pred ceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcCCCcEEEeCcHHHHHHHhhcCCCCCCCccEEEEecchhh
Q 017196 130 LSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRL 209 (375)
Q Consensus 130 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiV~Tp~~l~~~l~~~~~~~~~~~~~vIiDE~h~l 209 (375)
.++..++|+.+..+....+ .+...+..+|+|||++.+. ..++++++|||||+|..
T Consensus 216 ~~v~~~~s~~s~~~r~~~~-----------------~~~~~g~~~IVVgTrsal~--------~p~~~l~liVvDEeh~~ 270 (679)
T PRK05580 216 APVAVLHSGLSDGERLDEW-----------------RKAKRGEAKVVIGARSALF--------LPFKNLGLIIVDEEHDS 270 (679)
T ss_pred CCEEEEECCCCHHHHHHHH-----------------HHHHcCCCCEEEeccHHhc--------ccccCCCEEEEECCCcc
Confidence 7889999987765553321 1223445899999997653 34678899999999965
Q ss_pred h
Q 017196 210 L 210 (375)
Q Consensus 210 ~ 210 (375)
.
T Consensus 271 s 271 (679)
T PRK05580 271 S 271 (679)
T ss_pred c
Confidence 3
No 85
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=99.80 E-value=2.5e-19 Score=164.73 Aligned_cols=263 Identities=19% Similarity=0.203 Sum_probs=171.1
Q ss_pred HHHHHHHHh-CCCCCc-cHhhHHHHHHhhCCCCCCCCEEEECCCCCchHHHhHHHHHHHhhhcccCCceEEEEcccHHHH
Q 017196 37 PRLKVALQN-MGISSL-FPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLA 114 (375)
Q Consensus 37 ~~i~~~l~~-~g~~~~-~~~Q~~~~~~~~~~~~~~~~~ii~a~TGsGKTl~~~l~il~~l~~~~~~~~~~lil~Pt~~L~ 114 (375)
..+.++|++ +|+..+ ++.|..|...+.+ ..+|+.|++|||+||++||.+|.+. .+..+|++.|..+|+
T Consensus 5 r~VreaLKK~FGh~kFKs~LQE~A~~c~VK---~k~DVyVsMPTGaGKSLCyQLPaL~-------~~gITIV~SPLiALI 74 (641)
T KOG0352|consen 5 RKVREALKKLFGHKKFKSRLQEQAINCIVK---RKCDVYVSMPTGAGKSLCYQLPALV-------HGGITIVISPLIALI 74 (641)
T ss_pred HHHHHHHHHHhCchhhcChHHHHHHHHHHh---ccCcEEEeccCCCchhhhhhchHHH-------hCCeEEEehHHHHHH
Confidence 467788876 687776 8999999988886 6789999999999999999999975 223799999999999
Q ss_pred HHHHHHHHHhccccCceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcCCCcEEEeCcHHHHH-----HHhh
Q 017196 115 LQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMD-----HINA 189 (375)
Q Consensus 115 ~Q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiV~Tp~~l~~-----~l~~ 189 (375)
..+...+..+ .+++..+.+..+..+..+.+.. ++.......++--||+.... +++.
T Consensus 75 kDQiDHL~~L----KVp~~SLNSKlSt~ER~ri~~D---------------L~~ekp~~K~LYITPE~AAt~~FQ~lLn~ 135 (641)
T KOG0352|consen 75 KDQIDHLKRL----KVPCESLNSKLSTVERSRIMGD---------------LAKEKPTIKMLYITPEGAATDGFQKLLNG 135 (641)
T ss_pred HHHHHHHHhc----CCchhHhcchhhHHHHHHHHHH---------------HHhcCCceeEEEEchhhhhhhhHHHHHHH
Confidence 9888888776 4455555554443333221111 11223356788899986532 2222
Q ss_pred cCCCCCCCccEEEEecchhhhhHh--HHhHHHHHHHhhhcccccccccccccccccccccccccccccccCCCCCCCCce
Q 017196 190 TRGFTLEHLCYLVVDETDRLLREA--YQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRL 267 (375)
Q Consensus 190 ~~~~~~~~~~~vIiDE~h~l~~~~--~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (375)
...-..+.++||||||++..++ |++.+..+-.+-.... ..
T Consensus 136 --L~~r~~L~Y~vVDEAHCVSQWGHDFRPDYL~LG~LRS~~~------------------------------------~v 177 (641)
T KOG0352|consen 136 --LANRDVLRYIVVDEAHCVSQWGHDFRPDYLTLGSLRSVCP------------------------------------GV 177 (641)
T ss_pred --HhhhceeeeEEechhhhHhhhccccCcchhhhhhHHhhCC------------------------------------CC
Confidence 1122457899999999998875 5555444333222111 23
Q ss_pred eEEEEEEecCCCchhhh--ccccCCCeEEecCCccccCcccc---eeEEEeccCCCcHHHHHHHHHh-------------
Q 017196 268 VKMVLSATLTQDPNKLA--QLDLHHPLFLTTGETRYKLPERL---ESYKLICESKLKPLYLVALLQS------------- 329 (375)
Q Consensus 268 q~i~~SATl~~~~~~~~--~~~~~~~~~i~~~~~~~~~~~~i---~~~~~~~~~~~k~~~l~~ll~~------------- 329 (375)
.-+.++||-+..+.+-+ ...+.+|+-+...+. ...++ .++... -.+-+..|.++-..
T Consensus 178 pwvALTATA~~~VqEDi~~qL~L~~PVAiFkTP~---FR~NLFYD~~~K~~--I~D~~~~LaDF~~~~LG~~~~~~~~~K 252 (641)
T KOG0352|consen 178 PWVALTATANAKVQEDIAFQLKLRNPVAIFKTPT---FRDNLFYDNHMKSF--ITDCLTVLADFSSSNLGKHEKASQNKK 252 (641)
T ss_pred ceEEeecccChhHHHHHHHHHhhcCcHHhccCcc---hhhhhhHHHHHHHH--hhhHhHhHHHHHHHhcCChhhhhcCCC
Confidence 46899999887776544 344567765543321 11111 001000 01122223332221
Q ss_pred cCCCeEEEEcCChhhHHHHHHHHHHhcCCcceEEecccccccccc
Q 017196 330 LGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVR 374 (375)
Q Consensus 330 ~~~~k~lIF~~s~~~a~~l~~~L~~~g~~~~~~~~lh~~~~~~~R 374 (375)
...+..||||.|++.|+.++-.|.. .|+.+..||.|+...||
T Consensus 253 ~~~GCGIVYCRTR~~cEq~AI~l~~---~Gi~A~AYHAGLK~~ER 294 (641)
T KOG0352|consen 253 TFTGCGIVYCRTRNECEQVAIMLEI---AGIPAMAYHAGLKKKER 294 (641)
T ss_pred CcCcceEEEeccHHHHHHHHHHhhh---cCcchHHHhcccccchh
Confidence 1235799999999999999999994 55999999999999988
No 86
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=99.80 E-value=4.3e-18 Score=179.77 Aligned_cols=232 Identities=18% Similarity=0.200 Sum_probs=144.5
Q ss_pred hhCCCCCCCCEEEECCCCCchHHHhHHHHHHHhhhcccCCceEEEEcc----cHHHHHHHHHHHHH-hccccCceEEEee
Q 017196 62 TIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLP----TRDLALQVKDVFAA-IAPAVGLSVGLAV 136 (375)
Q Consensus 62 ~~~~~~~~~~~ii~a~TGsGKTl~~~l~il~~l~~~~~~~~~~lil~P----t~~L~~Q~~~~~~~-~~~~~~~~v~~~~ 136 (375)
++..+.+++.++|+|+||||||. .+|.+..-.... ....+++.-| +++||.++...+.. ++...|..+
T Consensus 82 Il~ai~~~~VviI~GeTGSGKTT--qlPq~lle~g~g-~~g~I~~TQPRRlAArsLA~RVA~El~~~lG~~VGY~v---- 154 (1294)
T PRK11131 82 ILEAIRDHQVVIVAGETGSGKTT--QLPKICLELGRG-VKGLIGHTQPRRLAARTVANRIAEELETELGGCVGYKV---- 154 (1294)
T ss_pred HHHHHHhCCeEEEECCCCCCHHH--HHHHHHHHcCCC-CCCceeeCCCcHHHHHHHHHHHHHHHhhhhcceeceee----
Confidence 34444467788999999999998 577433221111 1112333335 46777777777764 333223221
Q ss_pred cCCchHHHHHHHhhcCccccCccCCchhHHHhhcCCCcEEEeCcHHHHHHHhhcCCCCCCCccEEEEecchh-hhhHhHH
Q 017196 137 GQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDR-LLREAYQ 215 (375)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiV~Tp~~l~~~l~~~~~~~~~~~~~vIiDE~h~-l~~~~~~ 215 (375)
... .....+.+|+|+||+.|++.+... ..++.+++|||||||. .++.+|.
T Consensus 155 rf~---------------------------~~~s~~t~I~v~TpG~LL~~l~~d--~~Ls~~~~IIIDEAHERsLn~DfL 205 (1294)
T PRK11131 155 RFN---------------------------DQVSDNTMVKLMTDGILLAEIQQD--RLLMQYDTIIIDEAHERSLNIDFI 205 (1294)
T ss_pred cCc---------------------------cccCCCCCEEEEChHHHHHHHhcC--CccccCcEEEecCccccccccchH
Confidence 100 012346799999999999998863 3489999999999994 6666653
Q ss_pred hHHHHHHHhhhcccccccccccccccccccccccccccccccCCCCCCCCceeEEEEEEecCCCchhhhccccCCCeEEe
Q 017196 216 AWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLT 295 (375)
Q Consensus 216 ~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~~~~~~~~~~~~~~~i~ 295 (375)
. ..+...++.. ++.|+|+||||++ ...+.+.+...+. +.
T Consensus 206 L--g~Lk~lL~~r------------------------------------pdlKvILmSATid--~e~fs~~F~~apv-I~ 244 (1294)
T PRK11131 206 L--GYLKELLPRR------------------------------------PDLKVIITSATID--PERFSRHFNNAPI-IE 244 (1294)
T ss_pred H--HHHHHhhhcC------------------------------------CCceEEEeeCCCC--HHHHHHHcCCCCE-EE
Confidence 2 2233333221 1568999999995 3566666655554 44
Q ss_pred cCCccccCcccceeEEEeccCCC---cHHHHHHHHH------hcCCCeEEEEcCChhhHHHHHHHHHHhcCCcceEEecc
Q 017196 296 TGETRYKLPERLESYKLICESKL---KPLYLVALLQ------SLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYS 366 (375)
Q Consensus 296 ~~~~~~~~~~~i~~~~~~~~~~~---k~~~l~~ll~------~~~~~k~lIF~~s~~~a~~l~~~L~~~g~~~~~~~~lh 366 (375)
+....+ .++.++....... +.+.+..++. ....+++||||++..+++.+++.|+..+-....+..+|
T Consensus 245 V~Gr~~----pVei~y~p~~~~~~~~~~d~l~~ll~~V~~l~~~~~GdILVFLpg~~EIe~lae~L~~~~~~~~~VlpLh 320 (1294)
T PRK11131 245 VSGRTY----PVEVRYRPIVEEADDTERDQLQAIFDAVDELGREGPGDILIFMSGEREIRDTADALNKLNLRHTEILPLY 320 (1294)
T ss_pred EcCccc----cceEEEeecccccchhhHHHHHHHHHHHHHHhcCCCCCEEEEcCCHHHHHHHHHHHHhcCCCcceEeecc
Confidence 433221 2444554443221 2333333322 23457899999999999999999997653445688999
Q ss_pred cccccccc
Q 017196 367 GLQRQSVR 374 (375)
Q Consensus 367 ~~~~~~~R 374 (375)
|+|++++|
T Consensus 321 g~Ls~~eQ 328 (1294)
T PRK11131 321 ARLSNSEQ 328 (1294)
T ss_pred cCCCHHHH
Confidence 99998876
No 87
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=99.80 E-value=9e-19 Score=177.80 Aligned_cols=144 Identities=18% Similarity=0.282 Sum_probs=119.8
Q ss_pred CCHHHHHHHH-----hCCCCCc---cHhhHHHHHHhhCCCCCCCCEEEECCCCCchHHHhHHHHHHHhhhcccCCceEEE
Q 017196 35 LDPRLKVALQ-----NMGISSL---FPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALV 106 (375)
Q Consensus 35 l~~~i~~~l~-----~~g~~~~---~~~Q~~~~~~~~~~~~~~~~~ii~a~TGsGKTl~~~l~il~~l~~~~~~~~~~li 106 (375)
+..++...+. ..|+..| +|+|.++++.++ .+++++..++||+|||++|++|++..+.... .++|
T Consensus 69 l~re~~~r~lg~~~~~~G~~~p~~~tp~qvQ~I~~i~----l~~gvIAeaqTGeGKTLAf~LP~l~~aL~g~----~v~I 140 (970)
T PRK12899 69 VVKNVCRRLAGTPVEVSGYHQQWDMVPYDVQILGAIA----MHKGFITEMQTGEGKTLTAVMPLYLNALTGK----PVHL 140 (970)
T ss_pred CCHHHHHHHhccccccccccCCCCCChHHHHHhhhhh----cCCCeEEEeCCCCChHHHHHHHHHHHHhhcC----CeEE
Confidence 6666666655 5788888 999999865544 7899999999999999999999998886542 4899
Q ss_pred EcccHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcCCCcEEEeCcHHH-HH
Q 017196 107 VLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRL-MD 185 (375)
Q Consensus 107 l~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiV~Tp~~l-~~ 185 (375)
|+||++||.|....+..+....++++..+.||.+...+.. .+ +++|+||||++| .+
T Consensus 141 VTpTrELA~Qdae~m~~L~k~lGLsV~~i~GG~~~~eq~~---------------------~y--~~DIVygTPgRLgfD 197 (970)
T PRK12899 141 VTVNDYLAQRDCEWVGSVLRWLGLTTGVLVSGSPLEKRKE---------------------IY--QCDVVYGTASEFGFD 197 (970)
T ss_pred EeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHH---------------------Hc--CCCEEEECCChhHHH
Confidence 9999999999999999999999999999999987765532 22 589999999999 99
Q ss_pred HHhhcCCCCCC-------CccEEEEecchhhh
Q 017196 186 HINATRGFTLE-------HLCYLVVDETDRLL 210 (375)
Q Consensus 186 ~l~~~~~~~~~-------~~~~vIiDE~h~l~ 210 (375)
+++. +.+.++ .+.++||||||.|+
T Consensus 198 yLrd-~~~~~~~~~~vqr~~~~~IIDEADsmL 228 (970)
T PRK12899 198 YLRD-NSIATRKEEQVGRGFYFAIIDEVDSIL 228 (970)
T ss_pred HhhC-CCCCcCHHHhhcccccEEEEechhhhh
Confidence 9987 445544 56899999999994
No 88
>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only]
Probab=99.79 E-value=3e-18 Score=155.55 Aligned_cols=265 Identities=18% Similarity=0.218 Sum_probs=176.9
Q ss_pred CCHHHHHHHHh-CCCCCccHhhHHHHHHhhCCCCCCCCEEEECCCCCchHHHhHHHHHHHhhhcccCCceEEEEcccHHH
Q 017196 35 LDPRLKVALQN-MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDL 113 (375)
Q Consensus 35 l~~~i~~~l~~-~g~~~~~~~Q~~~~~~~~~~~~~~~~~ii~a~TGsGKTl~~~l~il~~l~~~~~~~~~~lil~Pt~~L 113 (375)
.+.+....|+. +..++++|.|..+++..+ .|.++.+..|||.||++||.+|++. ....+|+++|.+.|
T Consensus 78 ws~e~~~ilk~~f~lekfrplq~~ain~~m----a~ed~~lil~tgggkslcyqlpal~-------adg~alvi~plisl 146 (695)
T KOG0353|consen 78 WSDEAKDILKEQFHLEKFRPLQLAAINATM----AGEDAFLILPTGGGKSLCYQLPALC-------ADGFALVICPLISL 146 (695)
T ss_pred CchHHHHHHHHHhhHHhcChhHHHHhhhhh----ccCceEEEEeCCCccchhhhhhHHh-------cCCceEeechhHHH
Confidence 77777777764 578899999999976555 7999999999999999999999975 22369999999999
Q ss_pred HHHHHHHHHHhccccCceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhh---cCCCcEEEeCcHHHHH---HH
Q 017196 114 ALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQEL---QSAVDILVATPGRLMD---HI 187 (375)
Q Consensus 114 ~~Q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~IiV~Tp~~l~~---~l 187 (375)
.+...-.++.+ |+....+...++..+... .-..+ .+...++-.||+++.. ++
T Consensus 147 medqil~lkql----gi~as~lnansske~~k~------------------v~~~i~nkdse~kliyvtpekiaksk~~m 204 (695)
T KOG0353|consen 147 MEDQILQLKQL----GIDASMLNANSSKEEAKR------------------VEAAITNKDSEFKLIYVTPEKIAKSKKFM 204 (695)
T ss_pred HHHHHHHHHHh----CcchhhccCcccHHHHHH------------------HHHHHcCCCceeEEEEecHHHHHHHHHHH
Confidence 99888888877 555555555544332211 00011 2346788899998854 22
Q ss_pred hhc-CCCCCCCccEEEEecchhhhhHh--HHhHHHHHHHhhhcccccccccccccccccccccccccccccccCCCCCCC
Q 017196 188 NAT-RGFTLEHLCYLVVDETDRLLREA--YQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPY 264 (375)
Q Consensus 188 ~~~-~~~~~~~~~~vIiDE~h~l~~~~--~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (375)
.+. +.+..+.++++-|||+|+...++ |+..+..+ ..+... +
T Consensus 205 nkleka~~~~~~~~iaidevhccsqwghdfr~dy~~l-~ilkrq-----------------------------------f 248 (695)
T KOG0353|consen 205 NKLEKALEAGFFKLIAIDEVHCCSQWGHDFRPDYKAL-GILKRQ-----------------------------------F 248 (695)
T ss_pred HHHHHHhhcceeEEEeecceeehhhhCcccCcchHHH-HHHHHh-----------------------------------C
Confidence 221 33567889999999999997764 44443322 222221 1
Q ss_pred CceeEEEEEEecCCCchhhhccccC--CCeEEecCCccccCcccceeEEEec--cCCCcHHHHHHHHH-hcCCCeEEEEc
Q 017196 265 PRLVKMVLSATLTQDPNKLAQLDLH--HPLFLTTGETRYKLPERLESYKLIC--ESKLKPLYLVALLQ-SLGEEKCIVFT 339 (375)
Q Consensus 265 ~~~q~i~~SATl~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~~i~~~~~~~--~~~~k~~~l~~ll~-~~~~~k~lIF~ 339 (375)
++..+++++||-++.+..-++..+. ..........+ .+++-.+.-- ++++-++-+..+++ .+.+...||||
T Consensus 249 ~~~~iigltatatn~vl~d~k~il~ie~~~tf~a~fnr----~nl~yev~qkp~n~dd~~edi~k~i~~~f~gqsgiiyc 324 (695)
T KOG0353|consen 249 KGAPIIGLTATATNHVLDDAKDILCIEAAFTFRAGFNR----PNLKYEVRQKPGNEDDCIEDIAKLIKGDFAGQSGIIYC 324 (695)
T ss_pred CCCceeeeehhhhcchhhHHHHHHhHHhhheeecccCC----CCceeEeeeCCCChHHHHHHHHHHhccccCCCcceEEE
Confidence 2455899999998776665554442 11122222221 2222211111 12223344445554 34667899999
Q ss_pred CChhhHHHHHHHHHHhcCCcceEEeccccccccccC
Q 017196 340 SSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRR 375 (375)
Q Consensus 340 ~s~~~a~~l~~~L~~~g~~~~~~~~lh~~~~~~~R~ 375 (375)
-+.++|++++..|+.+| +.+..||..|.+.+|.
T Consensus 325 ~sq~d~ekva~alkn~g---i~a~~yha~lep~dks 357 (695)
T KOG0353|consen 325 FSQKDCEKVAKALKNHG---IHAGAYHANLEPEDKS 357 (695)
T ss_pred eccccHHHHHHHHHhcC---ccccccccccCccccc
Confidence 99999999999999554 9999999999998874
No 89
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=99.78 E-value=7.6e-18 Score=178.78 Aligned_cols=136 Identities=19% Similarity=0.172 Sum_probs=92.6
Q ss_pred CccHhhHHHHHHhhCCCCCC-CCEEEECCCCCchHHHhHHHHHHHhhhcccCCceEEEEcccHHHHHHHHHHHHHhcccc
Q 017196 50 SLFPVQVAVWQETIGPGLFE-RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAV 128 (375)
Q Consensus 50 ~~~~~Q~~~~~~~~~~~~~~-~~~ii~a~TGsGKTl~~~l~il~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~ 128 (375)
.+++||.+|+..+...+..| ++++++++||||||.+++. ++.++.+.. ...++|||+|+++|+.|+...++.+....
T Consensus 413 ~lR~YQ~~AI~ai~~a~~~g~r~~Ll~maTGSGKT~tai~-li~~L~~~~-~~~rVLfLvDR~~L~~Qa~~~F~~~~~~~ 490 (1123)
T PRK11448 413 GLRYYQEDAIQAVEKAIVEGQREILLAMATGTGKTRTAIA-LMYRLLKAK-RFRRILFLVDRSALGEQAEDAFKDTKIEG 490 (1123)
T ss_pred CCCHHHHHHHHHHHHHHHhccCCeEEEeCCCCCHHHHHHH-HHHHHHhcC-ccCeEEEEecHHHHHHHHHHHHHhccccc
Confidence 58999999998887665544 6799999999999998543 444444432 33589999999999999999999874322
Q ss_pred CceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcCCCcEEEeCcHHHHHHHhhc----CCCCCCCccEEEEe
Q 017196 129 GLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINAT----RGFTLEHLCYLVVD 204 (375)
Q Consensus 129 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiV~Tp~~l~~~l~~~----~~~~~~~~~~vIiD 204 (375)
...+..+++....... .......|+|+|.+++...+... ..+.+.++++||||
T Consensus 491 ~~~~~~i~~i~~L~~~-----------------------~~~~~~~I~iaTiQtl~~~~~~~~~~~~~~~~~~fdlIIiD 547 (1123)
T PRK11448 491 DQTFASIYDIKGLEDK-----------------------FPEDETKVHVATVQGMVKRILYSDDPMDKPPVDQYDCIIVD 547 (1123)
T ss_pred ccchhhhhchhhhhhh-----------------------cccCCCCEEEEEHHHHHHhhhccccccccCCCCcccEEEEE
Confidence 2121111111100000 11234699999999987765321 12457889999999
Q ss_pred cchhhh
Q 017196 205 ETDRLL 210 (375)
Q Consensus 205 E~h~l~ 210 (375)
|||+-.
T Consensus 548 EaHRs~ 553 (1123)
T PRK11448 548 EAHRGY 553 (1123)
T ss_pred CCCCCC
Confidence 999864
No 90
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=99.77 E-value=5.6e-17 Score=167.07 Aligned_cols=259 Identities=17% Similarity=0.179 Sum_probs=192.5
Q ss_pred CCHHHHHHHH-hCCCCCccHhhHHHHHHhhCCCCCC--CCEEEECCCCCchHHHhHHHHHHHhhhcccCCceEEEEcccH
Q 017196 35 LDPRLKVALQ-NMGISSLFPVQVAVWQETIGPGLFE--RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTR 111 (375)
Q Consensus 35 l~~~i~~~l~-~~g~~~~~~~Q~~~~~~~~~~~~~~--~~~ii~a~TGsGKTl~~~l~il~~l~~~~~~~~~~lil~Pt~ 111 (375)
.+.+....+. .++| .-|+-|..|++.+..-+.++ .|=+||+..|-|||.+++=++...+..+ ++|.++|||.
T Consensus 579 ~d~~~q~~F~~~FPy-eET~DQl~AI~eVk~DM~~~kpMDRLiCGDVGFGKTEVAmRAAFkAV~~G----KQVAvLVPTT 653 (1139)
T COG1197 579 PDTEWQEEFEASFPY-EETPDQLKAIEEVKRDMESGKPMDRLICGDVGFGKTEVAMRAAFKAVMDG----KQVAVLVPTT 653 (1139)
T ss_pred CChHHHHHHHhcCCC-cCCHHHHHHHHHHHHHhccCCcchheeecCcCCcHHHHHHHHHHHHhcCC----CeEEEEcccH
Confidence 4556666664 4687 88999999999998777777 5889999999999999988888777665 4899999999
Q ss_pred HHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcC-CCcEEEeCcHHHHHHHhhc
Q 017196 112 DLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQS-AVDILVATPGRLMDHINAT 190 (375)
Q Consensus 112 ~L~~Q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~IiV~Tp~~l~~~l~~~ 190 (375)
-||+|-++.+++-+..++++|..+..=.+.+++. +..+.+.. ..|||||| ..++..
T Consensus 654 lLA~QHy~tFkeRF~~fPV~I~~LSRF~s~kE~~------------------~il~~la~G~vDIvIGT----HrLL~k- 710 (1139)
T COG1197 654 LLAQQHYETFKERFAGFPVRIEVLSRFRSAKEQK------------------EILKGLAEGKVDIVIGT----HRLLSK- 710 (1139)
T ss_pred HhHHHHHHHHHHHhcCCCeeEEEecccCCHHHHH------------------HHHHHHhcCCccEEEec----hHhhCC-
Confidence 9999999999999999999999887766655552 33445554 49999999 445543
Q ss_pred CCCCCCCccEEEEecchhhhhHhHHhHHHHHHHhhhcccccccccccccccccccccccccccccccCCCCCCCCceeEE
Q 017196 191 RGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKM 270 (375)
Q Consensus 191 ~~~~~~~~~~vIiDE~h~l~~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i 270 (375)
.+.++++.++||||=|++.-.. .+.+..+. . ++-++
T Consensus 711 -dv~FkdLGLlIIDEEqRFGVk~-KEkLK~Lr----~--------------------------------------~VDvL 746 (1139)
T COG1197 711 -DVKFKDLGLLIIDEEQRFGVKH-KEKLKELR----A--------------------------------------NVDVL 746 (1139)
T ss_pred -CcEEecCCeEEEechhhcCccH-HHHHHHHh----c--------------------------------------cCcEE
Confidence 5889999999999999884332 33333332 2 44589
Q ss_pred EEEEecCCCchhhhccccCCCeEEecCCccccCcccceeEEEeccCCCcHHHHHH-HHHhc-CCCeEEEEcCChhhHHHH
Q 017196 271 VLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVA-LLQSL-GEEKCIVFTSSVESTHRL 348 (375)
Q Consensus 271 ~~SATl~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~-ll~~~-~~~k~lIF~~s~~~a~~l 348 (375)
-+|||+.+......-.++++.-.+...+.+ +..++-++ .+.+. ..+.+ ++++. .++++...+|.+++.+++
T Consensus 747 TLSATPIPRTL~Msm~GiRdlSvI~TPP~~---R~pV~T~V---~~~d~-~~ireAI~REl~RgGQvfYv~NrV~~Ie~~ 819 (1139)
T COG1197 747 TLSATPIPRTLNMSLSGIRDLSVIATPPED---RLPVKTFV---SEYDD-LLIREAILRELLRGGQVFYVHNRVESIEKK 819 (1139)
T ss_pred EeeCCCCcchHHHHHhcchhhhhccCCCCC---CcceEEEE---ecCCh-HHHHHHHHHHHhcCCEEEEEecchhhHHHH
Confidence 999999888788777777776666655443 22333332 22222 22333 23332 477999999999999999
Q ss_pred HHHHHHhcCCcceEEeccccccccc
Q 017196 349 CTLLNHFGELRIKIKEYSGLQRQSV 373 (375)
Q Consensus 349 ~~~L~~~g~~~~~~~~lh~~~~~~~ 373 (375)
+..|+..- ....+.+.||.|+.++
T Consensus 820 ~~~L~~LV-PEarI~vaHGQM~e~e 843 (1139)
T COG1197 820 AERLRELV-PEARIAVAHGQMRERE 843 (1139)
T ss_pred HHHHHHhC-CceEEEEeecCCCHHH
Confidence 99999774 5678999999999764
No 91
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=99.76 E-value=2e-17 Score=170.14 Aligned_cols=181 Identities=22% Similarity=0.219 Sum_probs=140.1
Q ss_pred HHHHhCCCCCccHhhHHHHHHhhCCCCCCCCEEEECCCCCchHHHhHHHHHHHhhhcccCCceEEEEcccHHHHHHHHHH
Q 017196 41 VALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDV 120 (375)
Q Consensus 41 ~~l~~~g~~~~~~~Q~~~~~~~~~~~~~~~~~ii~a~TGsGKTl~~~l~il~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~ 120 (375)
......|| .|-++|++|+..+- .|.+++++||||+|||..+..++...+.++ .+++|.+|.++|.+|.++.
T Consensus 111 ~~~~~~~F-~LD~fQ~~a~~~Le----r~esVlV~ApTssGKTvVaeyAi~~al~~~----qrviYTsPIKALsNQKyrd 181 (1041)
T COG4581 111 PPAREYPF-ELDPFQQEAIAILE----RGESVLVCAPTSSGKTVVAEYAIALALRDG----QRVIYTSPIKALSNQKYRD 181 (1041)
T ss_pred cHHHhCCC-CcCHHHHHHHHHHh----CCCcEEEEccCCCCcchHHHHHHHHHHHcC----CceEeccchhhhhhhHHHH
Confidence 34456788 99999999975543 789999999999999999877776666554 2599999999999999999
Q ss_pred HHHhccccCceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcCCCcEEEeCcHHHHHHHhhcCCCCCCCccE
Q 017196 121 FAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCY 200 (375)
Q Consensus 121 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiV~Tp~~l~~~l~~~~~~~~~~~~~ 200 (375)
+.....+..--+++++|+.+ ++....++|.|.+-|.+++.+ +...+..+..
T Consensus 182 l~~~fgdv~~~vGL~TGDv~----------------------------IN~~A~clvMTTEILRnMlyr-g~~~~~~i~~ 232 (1041)
T COG4581 182 LLAKFGDVADMVGLMTGDVS----------------------------INPDAPCLVMTTEILRNMLYR-GSESLRDIEW 232 (1041)
T ss_pred HHHHhhhhhhhccceeccee----------------------------eCCCCceEEeeHHHHHHHhcc-Ccccccccce
Confidence 98766544234566777754 345568999999999999988 5678999999
Q ss_pred EEEecchhhhhHhHHhHHHHHHHhhhcccccccccccccccccccccccccccccccCCCCCCCCceeEEEEEEecCCCc
Q 017196 201 LVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDP 280 (375)
Q Consensus 201 vIiDE~h~l~~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~~ 280 (375)
||+||+|.+.+...+...+.++-+++. .+|++++|||+++.
T Consensus 233 ViFDEvHyi~D~eRG~VWEE~Ii~lP~--------------------------------------~v~~v~LSATv~N~- 273 (1041)
T COG4581 233 VVFDEVHYIGDRERGVVWEEVIILLPD--------------------------------------HVRFVFLSATVPNA- 273 (1041)
T ss_pred EEEEeeeeccccccchhHHHHHHhcCC--------------------------------------CCcEEEEeCCCCCH-
Confidence 999999999887777777888878777 67899999999764
Q ss_pred hhhhcccc---CCCeEEecCC
Q 017196 281 NKLAQLDL---HHPLFLTTGE 298 (375)
Q Consensus 281 ~~~~~~~~---~~~~~i~~~~ 298 (375)
.++..+.. ..+..+.+..
T Consensus 274 ~EF~~Wi~~~~~~~~~vv~t~ 294 (1041)
T COG4581 274 EEFAEWIQRVHSQPIHVVSTE 294 (1041)
T ss_pred HHHHHHHHhccCCCeEEEeec
Confidence 44433332 3455555443
No 92
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.75 E-value=9.5e-17 Score=170.18 Aligned_cols=250 Identities=18% Similarity=0.191 Sum_probs=152.5
Q ss_pred CCCCCccHhhHHHHHHhhCCCCCCCCEEEECCCCCchHHHhHHHHHHHhhhcccCCceEEEEcccHHHHHHHHHHHHHhc
Q 017196 46 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIA 125 (375)
Q Consensus 46 ~g~~~~~~~Q~~~~~~~~~~~~~~~~~ii~a~TGsGKTl~~~l~il~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~ 125 (375)
..+....|+...- +.++..+..++.++|+|+||||||. .+|.+..-... ....++++.-|.+--|..+...+.+..
T Consensus 60 ~~~~~~LPi~~~~-~~Il~~l~~~~vvii~g~TGSGKTT--qlPq~lle~~~-~~~~~I~~tQPRRlAA~svA~RvA~el 135 (1283)
T TIGR01967 60 IRYPDNLPVSAKR-EDIAEAIAENQVVIIAGETGSGKTT--QLPKICLELGR-GSHGLIGHTQPRRLAARTVAQRIAEEL 135 (1283)
T ss_pred ccCCCCCCHHHHH-HHHHHHHHhCceEEEeCCCCCCcHH--HHHHHHHHcCC-CCCceEecCCccHHHHHHHHHHHHHHh
Confidence 3454445655432 3455555577889999999999998 45654332211 122245556677776666665554322
Q ss_pred cccCceEEEeecCCc-hHHHHHHHhhcCccccCccCCchhHHHhhcCCCcEEEeCcHHHHHHHhhcCCCCCCCccEEEEe
Q 017196 126 PAVGLSVGLAVGQSS-IADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVD 204 (375)
Q Consensus 126 ~~~~~~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiV~Tp~~l~~~l~~~~~~~~~~~~~vIiD 204 (375)
+..++..+|... +.. ....+..|.++|++.|+..+.... .++.+++||||
T Consensus 136 ---g~~lG~~VGY~vR~~~------------------------~~s~~T~I~~~TdGiLLr~l~~d~--~L~~~~~IIID 186 (1283)
T TIGR01967 136 ---GTPLGEKVGYKVRFHD------------------------QVSSNTLVKLMTDGILLAETQQDR--FLSRYDTIIID 186 (1283)
T ss_pred ---CCCcceEEeeEEcCCc------------------------ccCCCceeeeccccHHHHHhhhCc--ccccCcEEEEc
Confidence 333333333211 000 123456899999999999887743 47899999999
Q ss_pred cchh-hhhHhHHh-HHHHHHHhhhcccccccccccccccccccccccccccccccCCCCCCCCceeEEEEEEecCCCchh
Q 017196 205 ETDR-LLREAYQA-WLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNK 282 (375)
Q Consensus 205 E~h~-l~~~~~~~-~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~~~~ 282 (375)
|||. .++.++.. .+..+ +... ++.|+++||||+. ...
T Consensus 187 EaHERsL~~D~LL~lLk~i---l~~r------------------------------------pdLKlIlmSATld--~~~ 225 (1283)
T TIGR01967 187 EAHERSLNIDFLLGYLKQL---LPRR------------------------------------PDLKIIITSATID--PER 225 (1283)
T ss_pred CcchhhccchhHHHHHHHH---HhhC------------------------------------CCCeEEEEeCCcC--HHH
Confidence 9994 66665532 12222 2211 1568999999995 356
Q ss_pred hhccccCCCeEEecCCccccCcccceeEEEeccCC------CcHHHHHHHHHh---cCCCeEEEEcCChhhHHHHHHHHH
Q 017196 283 LAQLDLHHPLFLTTGETRYKLPERLESYKLICESK------LKPLYLVALLQS---LGEEKCIVFTSSVESTHRLCTLLN 353 (375)
Q Consensus 283 ~~~~~~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~------~k~~~l~~ll~~---~~~~k~lIF~~s~~~a~~l~~~L~ 353 (375)
+.+.+...+. +.+....+ .+..+|...... ++.+.+...+.. ...+++|||+++..+++.+++.|.
T Consensus 226 fa~~F~~apv-I~V~Gr~~----PVev~Y~~~~~~~~~~~~~~~~~i~~~I~~l~~~~~GdILVFLpg~~EI~~l~~~L~ 300 (1283)
T TIGR01967 226 FSRHFNNAPI-IEVSGRTY----PVEVRYRPLVEEQEDDDLDQLEAILDAVDELFAEGPGDILIFLPGEREIRDAAEILR 300 (1283)
T ss_pred HHHHhcCCCE-EEECCCcc----cceeEEecccccccchhhhHHHHHHHHHHHHHhhCCCCEEEeCCCHHHHHHHHHHHH
Confidence 6666655554 33332221 233333332211 222333333332 245789999999999999999999
Q ss_pred HhcCCcceEEecccccccccc
Q 017196 354 HFGELRIKIKEYSGLQRQSVR 374 (375)
Q Consensus 354 ~~g~~~~~~~~lh~~~~~~~R 374 (375)
..+..++.+..+||+|++++|
T Consensus 301 ~~~~~~~~VlpLhg~Ls~~eQ 321 (1283)
T TIGR01967 301 KRNLRHTEILPLYARLSNKEQ 321 (1283)
T ss_pred hcCCCCcEEEeccCCCCHHHH
Confidence 765445789999999998876
No 93
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=99.74 E-value=4.5e-17 Score=165.46 Aligned_cols=130 Identities=25% Similarity=0.251 Sum_probs=104.0
Q ss_pred CCCCCccHhhHHHHHHhhCCCCCCCCEEEECCCCCchHHHhHHHHHHHhhhcccCCceEEEEcccHHHHHHHHHHHHHhc
Q 017196 46 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIA 125 (375)
Q Consensus 46 ~g~~~~~~~Q~~~~~~~~~~~~~~~~~ii~a~TGsGKTl~~~l~il~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~ 125 (375)
+|. .|+++|..+. + .+..| -+..+.||+|||++|.+|++.....+ . .+-|++||..||.|-+..+..+.
T Consensus 78 lg~-~~~dvQlig~---l-~L~~G--~Iaem~TGeGKTLva~lpa~l~aL~G--~--~V~IvTpn~yLA~rd~e~~~~l~ 146 (830)
T PRK12904 78 LGM-RHFDVQLIGG---M-VLHEG--KIAEMKTGEGKTLVATLPAYLNALTG--K--GVHVVTVNDYLAKRDAEWMGPLY 146 (830)
T ss_pred hCC-CCCccHHHhh---H-HhcCC--chhhhhcCCCcHHHHHHHHHHHHHcC--C--CEEEEecCHHHHHHHHHHHHHHH
Confidence 575 8999998874 2 22244 48999999999999999997444433 2 47799999999999999999999
Q ss_pred cccCceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcCCCcEEEeCcHHH-HHHHhhcCC-----CCCCCcc
Q 017196 126 PAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRL-MDHINATRG-----FTLEHLC 199 (375)
Q Consensus 126 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiV~Tp~~l-~~~l~~~~~-----~~~~~~~ 199 (375)
...|++++.+.|+.+...... . -.++|++|||+.| .++++.... ...+.+.
T Consensus 147 ~~LGlsv~~i~~~~~~~er~~---------------------~--y~~dI~ygT~~elgfDyLrd~~~~~~~~~~~r~~~ 203 (830)
T PRK12904 147 EFLGLSVGVILSGMSPEERRE---------------------A--YAADITYGTNNEFGFDYLRDNMVFSLEERVQRGLN 203 (830)
T ss_pred hhcCCeEEEEcCCCCHHHHHH---------------------h--cCCCeEEECCcchhhhhhhcccccchhhhcccccc
Confidence 999999999999876654422 1 2479999999999 899876432 2368899
Q ss_pred EEEEecchhh
Q 017196 200 YLVVDETDRL 209 (375)
Q Consensus 200 ~vIiDE~h~l 209 (375)
++||||||.+
T Consensus 204 ~aIvDEaDsi 213 (830)
T PRK12904 204 YAIVDEVDSI 213 (830)
T ss_pred eEEEechhhh
Confidence 9999999999
No 94
>KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only]
Probab=99.72 E-value=2.4e-17 Score=165.11 Aligned_cols=198 Identities=20% Similarity=0.242 Sum_probs=150.1
Q ss_pred CCccCccccCCCCCCCCCCHHHHHH-HHhCCCCCccHhhHHHHHHhhCCCCCCCCEEEECCCCCchHHHhHHHHHHHhhh
Q 017196 18 PVDVSLFEDCPLDHLPCLDPRLKVA-LQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSN 96 (375)
Q Consensus 18 ~~~~~~~~~~~~~~~~~l~~~i~~~-l~~~g~~~~~~~Q~~~~~~~~~~~~~~~~~ii~a~TGsGKTl~~~l~il~~l~~ 96 (375)
|.+-.+++.+-+.....+++.+... .+..|+..++.||.+++ ..+++..++|.+..+||+.|||+++.+-++..+..
T Consensus 190 ~~~~~~~etl~~~~a~~~~~k~~~~~~~~kgi~~~fewq~ecl--s~~~~~e~~nliys~Pts~gktlvaeilml~~~l~ 267 (1008)
T KOG0950|consen 190 PLGPTYLETLLFGFAKRLPTKVSHLYAKDKGILKLFEWQAECL--SLPRLLERKNLIYSLPTSAGKTLVAEILMLREVLC 267 (1008)
T ss_pred CCCccchhhhhhhhhhcCchHHHHHHHHhhhHHHHHHHHHHHh--cchhhhcccceEEeCCCccchHHHHHHHHHHHHHH
Confidence 3333444444444443455555444 45579999999999997 46777789999999999999999999988888776
Q ss_pred cccCCceEEEEcccHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcCCCcEE
Q 017196 97 RAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDIL 176 (375)
Q Consensus 97 ~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ii 176 (375)
... .++.+.|..+.+++-...+..+..+.|+.+-.++|....... ...-++.
T Consensus 268 ~rr---~~llilp~vsiv~Ek~~~l~~~~~~~G~~ve~y~g~~~p~~~-------------------------~k~~sv~ 319 (1008)
T KOG0950|consen 268 RRR---NVLLILPYVSIVQEKISALSPFSIDLGFPVEEYAGRFPPEKR-------------------------RKRESVA 319 (1008)
T ss_pred Hhh---ceeEecceeehhHHHHhhhhhhccccCCcchhhcccCCCCCc-------------------------ccceeee
Confidence 533 599999999999999999999999999999888876543221 2345899
Q ss_pred EeCcHHHHHHHhhc-CCCCCCCccEEEEecchhhhhHhHHhHHHHHHHhhhccccccccccccccccccccccccccccc
Q 017196 177 VATPGRLMDHINAT-RGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGV 255 (375)
Q Consensus 177 V~Tp~~l~~~l~~~-~~~~~~~~~~vIiDE~h~l~~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (375)
|+|.++-..+++.. ..-.+..+.+|||||.|++.+.+....++.++..+-.....
T Consensus 320 i~tiEkanslin~lie~g~~~~~g~vvVdElhmi~d~~rg~~lE~~l~k~~y~~~~------------------------ 375 (1008)
T KOG0950|consen 320 IATIEKANSLINSLIEQGRLDFLGMVVVDELHMIGDKGRGAILELLLAKILYENLE------------------------ 375 (1008)
T ss_pred eeehHhhHhHHHHHHhcCCccccCcEEEeeeeeeeccccchHHHHHHHHHHHhccc------------------------
Confidence 99999887777652 11246678899999999999998888888888776653321
Q ss_pred ccCCCCCCCCceeEEEEEEecCC
Q 017196 256 ERGFKDKPYPRLVKMVLSATLTQ 278 (375)
Q Consensus 256 ~~~~~~~~~~~~q~i~~SATl~~ 278 (375)
.-+|+|+||||+++
T Consensus 376 ---------~~~~iIGMSATi~N 389 (1008)
T KOG0950|consen 376 ---------TSVQIIGMSATIPN 389 (1008)
T ss_pred ---------cceeEeeeecccCC
Confidence 02789999999986
No 95
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=99.71 E-value=1.2e-16 Score=164.95 Aligned_cols=278 Identities=16% Similarity=0.114 Sum_probs=164.7
Q ss_pred CCccHhhHHHHHHhhCCCCCCCCEEEECCCCCchHHHhHHHHHHHhhhcccCCceEEEEcccHHHHHHHHHHHHHhcccc
Q 017196 49 SSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAV 128 (375)
Q Consensus 49 ~~~~~~Q~~~~~~~~~~~~~~~~~ii~a~TGsGKTl~~~l~il~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~ 128 (375)
...++.|..++.........+..+++.||||.|||.+.+.+++...........+++++.|++.+++++++.++.+....
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~vl~aPTG~GKT~asl~~a~~~~~~~~~~~~r~i~vlP~~t~ie~~~~r~~~~~~~~ 273 (733)
T COG1203 194 HEGYELQEKALELILRLEKRSLLVVLEAPTGYGKTEASLILALALLDEKIKLKSRVIYVLPFRTIIEDMYRRAKEIFGLF 273 (733)
T ss_pred chhhHHHHHHHHHHHhcccccccEEEEeCCCCChHHHHHHHHHHHhhccccccceEEEEccHHHHHHHHHHHHHhhhccc
Confidence 34599999999887754433338999999999999999999988887732356789999999999999999999887765
Q ss_pred CceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcCCCcEEEeCcHHHHHHHhhcCCCCCC-----CccEEEE
Q 017196 129 GLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLE-----HLCYLVV 203 (375)
Q Consensus 129 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiV~Tp~~l~~~l~~~~~~~~~-----~~~~vIi 203 (375)
++.....+|.....-. ..++........-.+.. ...-..+.++||.+....... .+.+. ..+++|+
T Consensus 274 ~~~~~~~h~~~~~~~~-----~~~~~~~~~~~~~~ds~--~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~S~vIl 344 (733)
T COG1203 274 SVIGKSLHSSSKEPLL-----LEPDQDILLTLTTNDSY--KKLLLALIVVTPIQILIFSVK--GFKFEFLALLLTSLVIL 344 (733)
T ss_pred ccccccccccccchhh-----hccccccceeEEecccc--cceeccccccCHhHhhhhhcc--ccchHHHHHHHhhchhh
Confidence 4433323333221111 00000000000000000 011245666666555442111 12211 2358999
Q ss_pred ecchhhhhHhHHhHHHHHHHhhhcccccccccccccccccccccccccccccccCCCCCCCCceeEEEEEEecCCCchhh
Q 017196 204 DETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKL 283 (375)
Q Consensus 204 DE~h~l~~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~~~~~ 283 (375)
||+|.+........+..++..+..... .+++||||+|....+.
T Consensus 345 DE~h~~~~~~~~~~l~~~i~~l~~~g~-------------------------------------~ill~SATlP~~~~~~ 387 (733)
T COG1203 345 DEVHLYADETMLAALLALLEALAEAGV-------------------------------------PVLLMSATLPPFLKEK 387 (733)
T ss_pred ccHHhhcccchHHHHHHHHHHHHhCCC-------------------------------------CEEEEecCCCHHHHHH
Confidence 999988665344555666666655433 4899999999887777
Q ss_pred hccccCCCeEEecCCccc-c-CcccceeE-EEeccCCCcHHHHHHHHHh-cCCCeEEEEcCChhhHHHHHHHHHHhcCCc
Q 017196 284 AQLDLHHPLFLTTGETRY-K-LPERLESY-KLICESKLKPLYLVALLQS-LGEEKCIVFTSSVESTHRLCTLLNHFGELR 359 (375)
Q Consensus 284 ~~~~~~~~~~i~~~~~~~-~-~~~~i~~~-~~~~~~~~k~~~l~~ll~~-~~~~k~lIF~~s~~~a~~l~~~L~~~g~~~ 359 (375)
....+.....+....... . ....+... ................... ..+.+++|.|||+..|.++++.|+..+
T Consensus 388 l~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kvlvI~NTV~~Aie~Y~~Lk~~~--- 464 (733)
T COG1203 388 LKKALGKGREVVENAKFCPKEDEPGLKRKERVDVEDGPQEELIELISEEVKEGKKVLVIVNTVDRAIELYEKLKEKG--- 464 (733)
T ss_pred HHHHHhcccceeccccccccccccccccccchhhhhhhhHhhhhcchhhhccCCcEEEEEecHHHHHHHHHHHHhcC---
Confidence 666554433333221100 0 00011111 0111111000111111122 246799999999999999999999655
Q ss_pred ceEEeccccccccccC
Q 017196 360 IKIKEYSGLQRQSVRR 375 (375)
Q Consensus 360 ~~~~~lh~~~~~~~R~ 375 (375)
..+..+||++...+|.
T Consensus 465 ~~v~LlHSRf~~~dR~ 480 (733)
T COG1203 465 PKVLLLHSRFTLKDRE 480 (733)
T ss_pred CCEEEEecccchhhHH
Confidence 3799999999999884
No 96
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.71 E-value=7.4e-16 Score=152.45 Aligned_cols=106 Identities=23% Similarity=0.270 Sum_probs=79.0
Q ss_pred EEECCCCCchHHHhHHHHHHHhhhcccCCceEEEEcccHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHHhhcC
Q 017196 73 CINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRP 152 (375)
Q Consensus 73 ii~a~TGsGKTl~~~l~il~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 152 (375)
++.++||||||.+|+..+...+.. +.++||++|+++|+.|+++.+++.+ +.++..++|+.+..+....+
T Consensus 1 LL~g~TGsGKT~v~l~~i~~~l~~----g~~vLvlvP~i~L~~Q~~~~l~~~f---~~~v~vlhs~~~~~er~~~~---- 69 (505)
T TIGR00595 1 LLFGVTGSGKTEVYLQAIEKVLAL----GKSVLVLVPEIALTPQMIQRFKYRF---GSQVAVLHSGLSDSEKLQAW---- 69 (505)
T ss_pred CccCCCCCCHHHHHHHHHHHHHHc----CCeEEEEeCcHHHHHHHHHHHHHHh---CCcEEEEECCCCHHHHHHHH----
Confidence 468999999999987665554433 2379999999999999999998754 46788889887665543321
Q ss_pred ccccCccCCchhHHHhhcCCCcEEEeCcHHHHHHHhhcCCCCCCCccEEEEecchhhh
Q 017196 153 KLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLL 210 (375)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~IiV~Tp~~l~~~l~~~~~~~~~~~~~vIiDE~h~l~ 210 (375)
.+...+..+|+|||+..+. ..+.++++|||||.|...
T Consensus 70 -------------~~~~~g~~~IVVGTrsalf--------~p~~~l~lIIVDEeh~~s 106 (505)
T TIGR00595 70 -------------RKVKNGEILVVIGTRSALF--------LPFKNLGLIIVDEEHDSS 106 (505)
T ss_pred -------------HHHHcCCCCEEECChHHHc--------CcccCCCEEEEECCCccc
Confidence 1223345899999987652 246788999999999764
No 97
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=99.71 E-value=1.7e-16 Score=161.12 Aligned_cols=131 Identities=23% Similarity=0.301 Sum_probs=105.5
Q ss_pred CCCCCccHhhHHHHHHhhCCCCCCCCEEEECCCCCchHHHhHHHHHHHhhhcccCCceEEEEcccHHHHHHHHHHHHHhc
Q 017196 46 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIA 125 (375)
Q Consensus 46 ~g~~~~~~~Q~~~~~~~~~~~~~~~~~ii~a~TGsGKTl~~~l~il~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~ 125 (375)
+|. .|+++|... .+.-++.-+..++||.|||++|++|++.....+. .+.|++|+.+||.|-...+..+.
T Consensus 79 lgm-~~ydVQliG------gl~L~~G~IaEm~TGEGKTL~a~lp~~l~al~g~----~VhIvT~ndyLA~RD~e~m~~l~ 147 (908)
T PRK13107 79 FEM-RHFDVQLLG------GMVLDSNRIAEMRTGEGKTLTATLPAYLNALTGK----GVHVITVNDYLARRDAENNRPLF 147 (908)
T ss_pred hCC-CcCchHHhc------chHhcCCccccccCCCCchHHHHHHHHHHHhcCC----CEEEEeCCHHHHHHHHHHHHHHH
Confidence 575 899999764 2223445699999999999999999998776652 39999999999999999999999
Q ss_pred cccCceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcCCCcEEEeCcHHH-HHHHhhcCCCCC-----CCcc
Q 017196 126 PAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRL-MDHINATRGFTL-----EHLC 199 (375)
Q Consensus 126 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiV~Tp~~l-~~~l~~~~~~~~-----~~~~ 199 (375)
...|+++..+.++.+.... .-.-+++|++|||+.| +++++..-.+.. +.+.
T Consensus 148 ~~lGlsv~~i~~~~~~~~r-----------------------~~~Y~~dI~YgT~~e~gfDyLrdnm~~~~~~~vqr~~~ 204 (908)
T PRK13107 148 EFLGLTVGINVAGLGQQEK-----------------------KAAYNADITYGTNNEFGFDYLRDNMAFSPQERVQRPLH 204 (908)
T ss_pred HhcCCeEEEecCCCCHHHH-----------------------HhcCCCCeEEeCCCcccchhhhccCccchhhhhccccc
Confidence 9999999999887664322 1123689999999999 898887433333 7889
Q ss_pred EEEEecchhhh
Q 017196 200 YLVVDETDRLL 210 (375)
Q Consensus 200 ~vIiDE~h~l~ 210 (375)
++||||+|.++
T Consensus 205 ~aIvDEvDsiL 215 (908)
T PRK13107 205 YALIDEVDSIL 215 (908)
T ss_pred eeeecchhhhc
Confidence 99999999994
No 98
>KOG0354 consensus DEAD-box like helicase [General function prediction only]
Probab=99.71 E-value=7.8e-17 Score=160.01 Aligned_cols=148 Identities=22% Similarity=0.231 Sum_probs=108.4
Q ss_pred CCCCccHhhHHHHHHhhCCCCCCCCEEEECCCCCchHHHhHHHHHHHhhhcccCCceEEEEcccHHHHHHHHHHHHHhcc
Q 017196 47 GISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAP 126 (375)
Q Consensus 47 g~~~~~~~Q~~~~~~~~~~~~~~~~~ii~a~TGsGKTl~~~l~il~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~ 126 (375)
+...++.||.+.. .+++ |+|++|++|||+|||.+++..+++.+... ++.++|+++|++-|+.|....+..++.
T Consensus 59 ~~~~lR~YQ~eiv---q~AL--gkNtii~lPTG~GKTfIAa~Vm~nh~rw~--p~~KiVF~aP~~pLv~QQ~a~~~~~~~ 131 (746)
T KOG0354|consen 59 TNLELRNYQEELV---QPAL--GKNTIIALPTGSGKTFIAAVIMKNHFEWR--PKGKVVFLAPTRPLVNQQIACFSIYLI 131 (746)
T ss_pred CcccccHHHHHHh---HHhh--cCCeEEEeecCCCccchHHHHHHHHHhcC--CcceEEEeeCCchHHHHHHHHHhhccC
Confidence 3348999998864 3333 99999999999999999999999999887 346899999999999999877776665
Q ss_pred ccCceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcCCCcEEEeCcHHHHHHHhhcCCCCCCCccEEEEecc
Q 017196 127 AVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDET 206 (375)
Q Consensus 127 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiV~Tp~~l~~~l~~~~~~~~~~~~~vIiDE~ 206 (375)
. -.+....|+...... ...+....+|+|.||+.+.+.+.+.....++.+.++|||||
T Consensus 132 ~--~~~T~~l~~~~~~~~---------------------r~~i~~s~~vff~TpQil~ndL~~~~~~~ls~fs~iv~DE~ 188 (746)
T KOG0354|consen 132 P--YSVTGQLGDTVPRSN---------------------RGEIVASKRVFFRTPQILENDLKSGLHDELSDFSLIVFDEC 188 (746)
T ss_pred c--ccceeeccCccCCCc---------------------hhhhhcccceEEeChHhhhhhcccccccccceEEEEEEccc
Confidence 3 334444444322111 11344567999999999999988744444799999999999
Q ss_pred hhhhhH-hHHhHHHHHHHh
Q 017196 207 DRLLRE-AYQAWLPTVLQL 224 (375)
Q Consensus 207 h~l~~~-~~~~~l~~i~~~ 224 (375)
|+-... .|...+..++..
T Consensus 189 Hra~kn~~Y~~Vmr~~l~~ 207 (746)
T KOG0354|consen 189 HRTSKNHPYNNIMREYLDL 207 (746)
T ss_pred ccccccccHHHHHHHHHHh
Confidence 987543 454444344433
No 99
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=99.70 E-value=1.4e-15 Score=153.42 Aligned_cols=286 Identities=20% Similarity=0.213 Sum_probs=167.7
Q ss_pred HHHHHHHhC-CCCCccHhhHHHHHHhhCCCCCCCCEEEECCCCCchHHHhHHHHHHHhhhcccCCceEEEEcccHHHHHH
Q 017196 38 RLKVALQNM-GISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQ 116 (375)
Q Consensus 38 ~i~~~l~~~-g~~~~~~~Q~~~~~~~~~~~~~~~~~ii~a~TGsGKTl~~~l~il~~l~~~~~~~~~~lil~Pt~~L~~Q 116 (375)
++.+.+.+. |+ .||..|+-= ...+..|++.-+.||||.|||. |.+.+-..+.. ++.+++||+||..|+.|
T Consensus 70 ~~~~fF~k~~G~-~~ws~QR~W----akR~~rg~SFaiiAPTGvGKTT-fg~~~sl~~a~---kgkr~yii~PT~~Lv~Q 140 (1187)
T COG1110 70 EFEEFFKKATGF-RPWSAQRVW----AKRLVRGKSFAIIAPTGVGKTT-FGLLMSLYLAK---KGKRVYIIVPTTTLVRQ 140 (1187)
T ss_pred HHHHHHHHhhCC-CchHHHHHH----HHHHHcCCceEEEcCCCCchhH-HHHHHHHHHHh---cCCeEEEEecCHHHHHH
Confidence 344556554 55 999999763 4445589999999999999996 32222222222 33589999999999999
Q ss_pred HHHHHHHhccccC-ceEEE-eecCCchHHHHHHHhhcCccccCccCCchhHHHhhcC-CCcEEEeCcHHHHHHHhhcCCC
Q 017196 117 VKDVFAAIAPAVG-LSVGL-AVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQS-AVDILVATPGRLMDHINATRGF 193 (375)
Q Consensus 117 ~~~~~~~~~~~~~-~~v~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~IiV~Tp~~l~~~l~~~~~~ 193 (375)
++..++.+++..+ ..+.. +|+..+.... ++..+.+.+ ..||+|+|...|...+...
T Consensus 141 ~~~kl~~~~e~~~~~~~~~~yh~~l~~~ek------------------ee~le~i~~gdfdIlitTs~FL~k~~e~L--- 199 (1187)
T COG1110 141 VYERLKKFAEDAGSLDVLVVYHSALPTKEK------------------EEALERIESGDFDILITTSQFLSKRFEEL--- 199 (1187)
T ss_pred HHHHHHHHHhhcCCcceeeeeccccchHHH------------------HHHHHHHhcCCccEEEEeHHHHHhhHHHh---
Confidence 9999999997765 44443 5555443332 233344554 5999999988777666552
Q ss_pred CCCCccEEEEecchhhhhHhHHhHHHHHHHhhhcccccc-------cccccccccccccccccccccccccCCCCCCCCc
Q 017196 194 TLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENR-------FSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPR 266 (375)
Q Consensus 194 ~~~~~~~vIiDE~h~l~~~~~~~~l~~i~~~l~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (375)
.-.+++++++|++|.++..+ ..+..++.++.-....- .........+.....++..|..... -...-...
T Consensus 200 ~~~kFdfifVDDVDA~Lkas--kNvDriL~LlGf~eE~i~~a~~~~~lr~~~~~~~~~~~~~e~~~~~e~~-~~~~r~k~ 276 (1187)
T COG1110 200 SKLKFDFIFVDDVDAILKAS--KNVDRLLRLLGFSEEVIESAYELIKLRRKLYGEKRAERVREELREVERE-REKKRRKL 276 (1187)
T ss_pred cccCCCEEEEccHHHHHhcc--ccHHHHHHHcCCCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHH-HHHhccCC
Confidence 22478899999999997654 22333333322110000 0000000011111111110100000 00000113
Q ss_pred eeEEEEEEecCCCch--hhhccccCCCeEEecCCccccCcccceeEEEeccCCCcHHHHHHHHHhcCCCeEEEEcCC---
Q 017196 267 LVKMVLSATLTQDPN--KLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSS--- 341 (375)
Q Consensus 267 ~q~i~~SATl~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~k~lIF~~s--- 341 (375)
-++++.|||....-. .+.+..+ -..++..... -+++...+... .-...+.++++.+..+ .|||++.
T Consensus 277 g~LvvsSATg~~rg~R~~LfReLl----gFevG~~~~~-LRNIvD~y~~~---~~~e~~~elvk~lG~G-gLIfV~~d~G 347 (1187)
T COG1110 277 GILVVSSATGKPRGSRLKLFRELL----GFEVGSGGEG-LRNIVDIYVES---ESLEKVVELVKKLGDG-GLIFVPIDYG 347 (1187)
T ss_pred ceEEEeeccCCCCCchHHHHHHHh----CCccCccchh-hhheeeeeccC---ccHHHHHHHHHHhCCC-eEEEEEcHHh
Confidence 478999999864321 2222222 1222222222 24455554433 5566778888887653 9999999
Q ss_pred hhhHHHHHHHHHHhcCCcceEEecccc
Q 017196 342 VESTHRLCTLLNHFGELRIKIKEYSGL 368 (375)
Q Consensus 342 ~~~a~~l~~~L~~~g~~~~~~~~lh~~ 368 (375)
++.|++++++|+.+| +++..+|++
T Consensus 348 ~e~aeel~e~Lr~~G---i~a~~~~a~ 371 (1187)
T COG1110 348 REKAEELAEYLRSHG---INAELIHAE 371 (1187)
T ss_pred HHHHHHHHHHHHhcC---ceEEEeecc
Confidence 999999999999554 999999885
No 100
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=99.70 E-value=9.9e-16 Score=125.35 Aligned_cols=120 Identities=39% Similarity=0.664 Sum_probs=92.4
Q ss_pred CCEEEECCCCCchHHHhHHHHHHHhhhcccCCceEEEEcccHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHHh
Q 017196 70 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELI 149 (375)
Q Consensus 70 ~~~ii~a~TGsGKTl~~~l~il~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 149 (375)
+++++.++||+|||..++..+....... ...+++|++|+..+++|+...+...... +..+..+.+........
T Consensus 1 ~~~~i~~~~G~GKT~~~~~~~~~~~~~~--~~~~~lv~~p~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~---- 73 (144)
T cd00046 1 RDVLLAAPTGSGKTLAALLPILELLDSL--KGGQVLVLAPTRELANQVAERLKELFGE-GIKVGYLIGGTSIKQQE---- 73 (144)
T ss_pred CCEEEECCCCCchhHHHHHHHHHHHhcc--cCCCEEEEcCcHHHHHHHHHHHHHHhhC-CcEEEEEecCcchhHHH----
Confidence 3689999999999999888777766653 3357999999999999999999887765 67777777765433332
Q ss_pred hcCccccCccCCchhHHHhhcCCCcEEEeCcHHHHHHHhhcCCCCCCCccEEEEecchhhhhHhH
Q 017196 150 KRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAY 214 (375)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~IiV~Tp~~l~~~l~~~~~~~~~~~~~vIiDE~h~l~~~~~ 214 (375)
.....+.+|+++|++.+...+.... .....++++|+||+|.+.....
T Consensus 74 -----------------~~~~~~~~i~i~t~~~~~~~~~~~~-~~~~~~~~iiiDE~h~~~~~~~ 120 (144)
T cd00046 74 -----------------KLLSGKTDIVVGTPGRLLDELERLK-LSLKKLDLLILDEAHRLLNQGF 120 (144)
T ss_pred -----------------HHhcCCCCEEEECcHHHHHHHHcCC-cchhcCCEEEEeCHHHHhhcch
Confidence 1234578999999999988776632 3456788999999999876654
No 101
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=99.70 E-value=1.1e-16 Score=137.86 Aligned_cols=150 Identities=23% Similarity=0.232 Sum_probs=93.0
Q ss_pred CccHhhHHHHHHhhCCCCC---CCCEEEECCCCCchHHHhHHHHHHHhhhcccCCceEEEEcccHHHHHHHHHHHHHhcc
Q 017196 50 SLFPVQVAVWQETIGPGLF---ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAP 126 (375)
Q Consensus 50 ~~~~~Q~~~~~~~~~~~~~---~~~~ii~a~TGsGKTl~~~l~il~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~ 126 (375)
+|+++|.+|+..++..+.. ++++++.+|||||||.+++..+..... +++|++|+..|++|+...+..+..
T Consensus 3 ~lr~~Q~~ai~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~~~~~l~~-------~~l~~~p~~~l~~Q~~~~~~~~~~ 75 (184)
T PF04851_consen 3 KLRPYQQEAIARIINSLENKKEERRVLLNAPTGSGKTIIALALILELAR-------KVLIVAPNISLLEQWYDEFDDFGS 75 (184)
T ss_dssp EE-HHHHHHHHHHHHHHHTTSGCSEEEEEESTTSSHHHHHHHHHHHHHC-------EEEEEESSHHHHHHHHHHHHHHST
T ss_pred CCCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCcChhhhhhhhcccc-------ceeEecCHHHHHHHHHHHHHHhhh
Confidence 6899999999998854443 478999999999999987654444333 699999999999999999977665
Q ss_pred ccCceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcCCCcEEEeCcHHHHHHHhhcCC----------CCCC
Q 017196 127 AVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRG----------FTLE 196 (375)
Q Consensus 127 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiV~Tp~~l~~~l~~~~~----------~~~~ 196 (375)
... ............. +....................+++++|.+.+......... ....
T Consensus 76 ~~~-~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 145 (184)
T PF04851_consen 76 EKY-NFFEKSIKPAYDS---------KEFISIQDDISDKSESDNNDKDIILTTYQSLQSDIKEEKKIDESARRSYKLLKN 145 (184)
T ss_dssp TSE-EEEE--GGGCCE----------SEEETTTTEEEHHHHHCBSS-SEEEEEHHHHHHHHHH---------GCHHGGGG
T ss_pred hhh-hhccccccccccc---------ccccccccccccccccccccccchhhHHHHHHhhcccccccccchhhhhhhccc
Confidence 321 1111000000000 0000000001111123345679999999999887654211 2345
Q ss_pred CccEEEEecchhhhhHh-HHh
Q 017196 197 HLCYLVVDETDRLLREA-YQA 216 (375)
Q Consensus 197 ~~~~vIiDE~h~l~~~~-~~~ 216 (375)
..++||+||||++.... +..
T Consensus 146 ~~~~vI~DEaH~~~~~~~~~~ 166 (184)
T PF04851_consen 146 KFDLVIIDEAHHYPSDSSYRE 166 (184)
T ss_dssp SESEEEEETGGCTHHHHHHHH
T ss_pred cCCEEEEehhhhcCCHHHHHH
Confidence 67899999999997766 433
No 102
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.70 E-value=4.3e-16 Score=154.75 Aligned_cols=143 Identities=18% Similarity=0.216 Sum_probs=110.1
Q ss_pred CCccHhhHHHHHHhhCCCCCCC-CEEEECCCCCchHHHhHHHHHHHhhhcccCCceEEEEcccHHHHHHHHHHHHHhccc
Q 017196 49 SSLFPVQVAVWQETIGPGLFER-DLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPA 127 (375)
Q Consensus 49 ~~~~~~Q~~~~~~~~~~~~~~~-~~ii~a~TGsGKTl~~~l~il~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~ 127 (375)
..|++||..|+..+.+++..|+ .+++++.||||||.++ +.++.++.+.. ...|+|+|+-+++|++|.+..+.++.+.
T Consensus 164 i~~RyyQ~~AI~rv~Eaf~~g~~raLlvMATGTGKTrTA-iaii~rL~r~~-~~KRVLFLaDR~~Lv~QA~~af~~~~P~ 241 (875)
T COG4096 164 IGPRYYQIIAIRRVIEAFSKGQNRALLVMATGTGKTRTA-IAIIDRLIKSG-WVKRVLFLADRNALVDQAYGAFEDFLPF 241 (875)
T ss_pred ccchHHHHHHHHHHHHHHhcCCceEEEEEecCCCcceeH-HHHHHHHHhcc-hhheeeEEechHHHHHHHHHHHHHhCCC
Confidence 4799999999999999998885 4999999999999985 66777777754 3458999999999999999999999885
Q ss_pred cCceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcCCCcEEEeCcHHHHHHHhhc----CCCCCCCccEEEE
Q 017196 128 VGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINAT----RGFTLEHLCYLVV 203 (375)
Q Consensus 128 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiV~Tp~~l~~~l~~~----~~~~~~~~~~vIi 203 (375)
+-.+..+.+.. ....++|.|+|...+..-+... +.+...++++|||
T Consensus 242 -~~~~n~i~~~~-----------------------------~~~s~~i~lsTyqt~~~~~~~~~~~~~~f~~g~FDlIvI 291 (875)
T COG4096 242 -GTKMNKIEDKK-----------------------------GDTSSEIYLSTYQTMTGRIEQKEDEYRRFGPGFFDLIVI 291 (875)
T ss_pred -ccceeeeeccc-----------------------------CCcceeEEEeehHHHHhhhhccccccccCCCCceeEEEe
Confidence 33333333321 2235799999999998877653 3366788999999
Q ss_pred ecchhhhhHhHHhHHHHHHHhhhc
Q 017196 204 DETDRLLREAYQAWLPTVLQLTRS 227 (375)
Q Consensus 204 DE~h~l~~~~~~~~l~~i~~~l~~ 227 (375)
||||+=+-..+ ..|+.++..
T Consensus 292 DEaHRgi~~~~----~~I~dYFdA 311 (875)
T COG4096 292 DEAHRGIYSEW----SSILDYFDA 311 (875)
T ss_pred chhhhhHHhhh----HHHHHHHHH
Confidence 99996544443 466666655
No 103
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=99.69 E-value=7.6e-16 Score=160.47 Aligned_cols=134 Identities=21% Similarity=0.203 Sum_probs=87.1
Q ss_pred CccHhhHHHHHHhhCCCCCCCCEEEECCCCCchHHHhHHHHHHHhhhcccCCceEEEEcccHHHHHHHHHHHHHhccccC
Q 017196 50 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVG 129 (375)
Q Consensus 50 ~~~~~Q~~~~~~~~~~~~~~~~~ii~a~TGsGKTl~~~l~il~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~ 129 (375)
.|.|||..+...++.. ....+++...+|.|||+.+.+.+...+..+ ...++|||||. .|+.||..++.+.+ +
T Consensus 152 ~l~pHQl~~~~~vl~~--~~~R~LLADEvGLGKTIeAglil~~l~~~g--~~~rvLIVvP~-sL~~QW~~El~~kF---~ 223 (956)
T PRK04914 152 SLIPHQLYIAHEVGRR--HAPRVLLADEVGLGKTIEAGMIIHQQLLTG--RAERVLILVPE-TLQHQWLVEMLRRF---N 223 (956)
T ss_pred CCCHHHHHHHHHHhhc--cCCCEEEEeCCcCcHHHHHHHHHHHHHHcC--CCCcEEEEcCH-HHHHHHHHHHHHHh---C
Confidence 6999999998766542 245699999999999999866555554444 33479999998 89999999997543 3
Q ss_pred ceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcCCCcEEEeCcHHHHHHHhhcCCCCCCCccEEEEecchhh
Q 017196 130 LSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRL 209 (375)
Q Consensus 130 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiV~Tp~~l~~~l~~~~~~~~~~~~~vIiDE~h~l 209 (375)
+.+..+.++.. .... .. +. ......+++|+|.+.+...-.....+.-..+++|||||||++
T Consensus 224 l~~~i~~~~~~-~~~~----~~----------~~----~pf~~~~~vI~S~~~l~~~~~~~~~l~~~~wdlvIvDEAH~l 284 (956)
T PRK04914 224 LRFSLFDEERY-AEAQ----HD----------AD----NPFETEQLVICSLDFLRRNKQRLEQALAAEWDLLVVDEAHHL 284 (956)
T ss_pred CCeEEEcCcch-hhhc----cc----------cc----CccccCcEEEEEHHHhhhCHHHHHHHhhcCCCEEEEechhhh
Confidence 55444443321 1100 00 00 011246899999887764221111133347899999999999
Q ss_pred h
Q 017196 210 L 210 (375)
Q Consensus 210 ~ 210 (375)
-
T Consensus 285 k 285 (956)
T PRK04914 285 V 285 (956)
T ss_pred c
Confidence 5
No 104
>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification]
Probab=99.67 E-value=1.4e-15 Score=151.82 Aligned_cols=157 Identities=17% Similarity=0.152 Sum_probs=126.8
Q ss_pred HhCCCCCccHhhHHHHHHhhCCCCCCCCEEEECCCCCchHHHhHHHHHHHhhhcccCCceEEEEcccHHHHHHHHHHHHH
Q 017196 44 QNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAA 123 (375)
Q Consensus 44 ~~~g~~~~~~~Q~~~~~~~~~~~~~~~~~ii~a~TGsGKTl~~~l~il~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~ 123 (375)
..++| .|-.+|++|+.++- .|..+.|.|+|.+|||.++..++...-.+ ..|+||-+|-++|.+|-++.++.
T Consensus 292 ~~~pF-elD~FQk~Ai~~le----rg~SVFVAAHTSAGKTvVAEYAialaq~h----~TR~iYTSPIKALSNQKfRDFk~ 362 (1248)
T KOG0947|consen 292 LIYPF-ELDTFQKEAIYHLE----RGDSVFVAAHTSAGKTVVAEYAIALAQKH----MTRTIYTSPIKALSNQKFRDFKE 362 (1248)
T ss_pred hhCCC-CccHHHHHHHHHHH----cCCeEEEEecCCCCcchHHHHHHHHHHhh----ccceEecchhhhhccchHHHHHH
Confidence 44677 89999999987765 68899999999999999975544333222 23799999999999999999998
Q ss_pred hccccCceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcCCCcEEEeCcHHHHHHHhhcCCCCCCCccEEEE
Q 017196 124 IAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVV 203 (375)
Q Consensus 124 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiV~Tp~~l~~~l~~~~~~~~~~~~~vIi 203 (375)
-+.+.| +++|+... .....++|+|.+-|.+++.+ +.--.+++.+||+
T Consensus 363 tF~Dvg----LlTGDvqi----------------------------nPeAsCLIMTTEILRsMLYr-gadliRDvE~VIF 409 (1248)
T KOG0947|consen 363 TFGDVG----LLTGDVQI----------------------------NPEASCLIMTTEILRSMLYR-GADLIRDVEFVIF 409 (1248)
T ss_pred hccccc----eeecceee----------------------------CCCcceEeehHHHHHHHHhc-ccchhhccceEEE
Confidence 877544 78887643 33457999999999999988 4445789999999
Q ss_pred ecchhhhhHhHHhHHHHHHHhhhcccccccccccccccccccccccccccccccCCCCCCCCceeEEEEEEecCCCc
Q 017196 204 DETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDP 280 (375)
Q Consensus 204 DE~h~l~~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~~ 280 (375)
||+|.+-+...+..++.++=++|. .+++|++|||+|+..
T Consensus 410 DEVHYiND~eRGvVWEEViIMlP~--------------------------------------HV~~IlLSATVPN~~ 448 (1248)
T KOG0947|consen 410 DEVHYINDVERGVVWEEVIIMLPR--------------------------------------HVNFILLSATVPNTL 448 (1248)
T ss_pred eeeeecccccccccceeeeeeccc--------------------------------------cceEEEEeccCCChH
Confidence 999999777777777888878777 788999999998753
No 105
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=99.66 E-value=5.3e-15 Score=133.16 Aligned_cols=237 Identities=17% Similarity=0.119 Sum_probs=153.5
Q ss_pred CccHhhHHHHHHhhCCCCCCCCEEEECCCCCchHHHhHHHHHHHhhhcccCCceEEEEcccHHHHHHHHHHHHHhccccC
Q 017196 50 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVG 129 (375)
Q Consensus 50 ~~~~~Q~~~~~~~~~~~~~~~~~ii~a~TGsGKTl~~~l~il~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~ 129 (375)
++++.|+.+-+.++..+.+.++.+|.|-||+|||.. ++..++...+. +.++.|.+|..+.|.+++.++++-+. +
T Consensus 97 ~Ls~~Q~~as~~l~q~i~~k~~~lv~AV~GaGKTEM-if~~i~~al~~---G~~vciASPRvDVclEl~~Rlk~aF~--~ 170 (441)
T COG4098 97 TLSPGQKKASNQLVQYIKQKEDTLVWAVTGAGKTEM-IFQGIEQALNQ---GGRVCIASPRVDVCLELYPRLKQAFS--N 170 (441)
T ss_pred ccChhHHHHHHHHHHHHHhcCcEEEEEecCCCchhh-hHHHHHHHHhc---CCeEEEecCcccchHHHHHHHHHhhc--c
Confidence 899999999998888888889999999999999985 56666666554 34799999999999999999998766 4
Q ss_pred ceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcCCCcEEEeCcHHHHHHHhhcCCCCCCCccEEEEecchhh
Q 017196 130 LSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRL 209 (375)
Q Consensus 130 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiV~Tp~~l~~~l~~~~~~~~~~~~~vIiDE~h~l 209 (375)
..+..++|++.... ..+++|+|.-+|+.+-+ .++++||||+|.+
T Consensus 171 ~~I~~Lyg~S~~~f----------------------------r~plvVaTtHQLlrFk~--------aFD~liIDEVDAF 214 (441)
T COG4098 171 CDIDLLYGDSDSYF----------------------------RAPLVVATTHQLLRFKQ--------AFDLLIIDEVDAF 214 (441)
T ss_pred CCeeeEecCCchhc----------------------------cccEEEEehHHHHHHHh--------hccEEEEeccccc
Confidence 66788999875322 24899999877766543 3569999999988
Q ss_pred hhHhHHhHHHHHHHhhhcccccccccccccccccccccccccccccccCCCCCCCCceeEEEEEEecCCCchhhhccccC
Q 017196 210 LREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLH 289 (375)
Q Consensus 210 ~~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~~~~~~~~~~~ 289 (375)
.-..- ..+....+.-... +.-.+.+|||.+...+..+...-
T Consensus 215 P~~~d-~~L~~Av~~ark~-------------------------------------~g~~IylTATp~k~l~r~~~~g~- 255 (441)
T COG4098 215 PFSDD-QSLQYAVKKARKK-------------------------------------EGATIYLTATPTKKLERKILKGN- 255 (441)
T ss_pred cccCC-HHHHHHHHHhhcc-------------------------------------cCceEEEecCChHHHHHHhhhCC-
Confidence 42221 1122222222211 23379999999865544433321
Q ss_pred CCeEEecCCccccCcccceeEEEeccCC------CcH-HHHHHHHHhc--CCCeEEEEcCChhhHHHHHHHHHHhcCCcc
Q 017196 290 HPLFLTTGETRYKLPERLESYKLICESK------LKP-LYLVALLQSL--GEEKCIVFTSSVESTHRLCTLLNHFGELRI 360 (375)
Q Consensus 290 ~~~~i~~~~~~~~~~~~i~~~~~~~~~~------~k~-~~l~~ll~~~--~~~k~lIF~~s~~~a~~l~~~L~~~g~~~~ 360 (375)
-..+.+...-+..|-.+. .++++..- .|+ -.|...++.. .+.+++||+++++..++++..|+..- ...
T Consensus 256 -~~~~klp~RfH~~pLpvP-kf~w~~~~~k~l~r~kl~~kl~~~lekq~~~~~P~liF~p~I~~~eq~a~~lk~~~-~~~ 332 (441)
T COG4098 256 -LRILKLPARFHGKPLPVP-KFVWIGNWNKKLQRNKLPLKLKRWLEKQRKTGRPVLIFFPEIETMEQVAAALKKKL-PKE 332 (441)
T ss_pred -eeEeecchhhcCCCCCCC-ceEEeccHHHHhhhccCCHHHHHHHHHHHhcCCcEEEEecchHHHHHHHHHHHhhC-Ccc
Confidence 112222221111111222 22222211 111 1344445433 45689999999999999999995432 123
Q ss_pred eEEecccccc
Q 017196 361 KIKEYSGLQR 370 (375)
Q Consensus 361 ~~~~lh~~~~ 370 (375)
....+|+...
T Consensus 333 ~i~~Vhs~d~ 342 (441)
T COG4098 333 TIASVHSEDQ 342 (441)
T ss_pred ceeeeeccCc
Confidence 4567777653
No 106
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=99.64 E-value=5.2e-15 Score=154.87 Aligned_cols=138 Identities=17% Similarity=0.099 Sum_probs=98.6
Q ss_pred CccHhhHHHHHHhhCCCCCCCCEEEECCCCCchHHHhHHHHHHHhhhcccCCceEEEEcccHHHHHHHHHHHHHhccccC
Q 017196 50 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVG 129 (375)
Q Consensus 50 ~~~~~Q~~~~~~~~~~~~~~~~~ii~a~TGsGKTl~~~l~il~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~ 129 (375)
++++||.+++.+++.....|.++|++..+|.|||+.+ +.++..+.........+|||||. .+..||.+.++++++ .
T Consensus 169 ~Lr~YQleGlnWLi~l~~~g~gGILADEMGLGKTlQa-IalL~~L~~~~~~~gp~LIVvP~-SlL~nW~~Ei~kw~p--~ 244 (1033)
T PLN03142 169 KMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQT-ISLLGYLHEYRGITGPHMVVAPK-STLGNWMNEIRRFCP--V 244 (1033)
T ss_pred chHHHHHHHHHHHHHHHhcCCCEEEEeCCCccHHHHH-HHHHHHHHHhcCCCCCEEEEeCh-HHHHHHHHHHHHHCC--C
Confidence 7899999999998866667889999999999999975 44455554322233369999996 667889999999987 4
Q ss_pred ceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcCCCcEEEeCcHHHHHHHhhcCCCCCCCccEEEEecchhh
Q 017196 130 LSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRL 209 (375)
Q Consensus 130 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiV~Tp~~l~~~l~~~~~~~~~~~~~vIiDE~h~l 209 (375)
+++..++|.......... .......++|+|+|++.+...... +.--.+++||+||||.+
T Consensus 245 l~v~~~~G~~~eR~~~~~------------------~~~~~~~~dVvITSYe~l~~e~~~---L~k~~W~~VIvDEAHrI 303 (1033)
T PLN03142 245 LRAVKFHGNPEERAHQRE------------------ELLVAGKFDVCVTSFEMAIKEKTA---LKRFSWRYIIIDEAHRI 303 (1033)
T ss_pred CceEEEeCCHHHHHHHHH------------------HHhcccCCCcceecHHHHHHHHHH---hccCCCCEEEEcCcccc
Confidence 677777776432222110 001234589999999987654333 33346789999999998
Q ss_pred hhH
Q 017196 210 LRE 212 (375)
Q Consensus 210 ~~~ 212 (375)
-+.
T Consensus 304 KN~ 306 (1033)
T PLN03142 304 KNE 306 (1033)
T ss_pred CCH
Confidence 554
No 107
>KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification]
Probab=99.64 E-value=2e-15 Score=147.43 Aligned_cols=225 Identities=18% Similarity=0.228 Sum_probs=159.3
Q ss_pred CCCCCccHhhHHHHHHhhCCCCCCCCEEEECCCCCchHHHhHHHHHHHhhhcccCCceEEEEcccHHHHHHHHHHHHHhc
Q 017196 46 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIA 125 (375)
Q Consensus 46 ~g~~~~~~~Q~~~~~~~~~~~~~~~~~ii~a~TGsGKTl~~~l~il~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~ 125 (375)
..| ++-|+|..|+.++ .++..++|.|-|.+|||.++..++...++.. .|+||-.|-++|.+|-|+.+..-+
T Consensus 126 YPF-~LDpFQ~~aI~Ci----dr~eSVLVSAHTSAGKTVVAeYAIA~sLr~k----QRVIYTSPIKALSNQKYREl~~EF 196 (1041)
T KOG0948|consen 126 YPF-TLDPFQSTAIKCI----DRGESVLVSAHTSAGKTVVAEYAIAMSLREK----QRVIYTSPIKALSNQKYRELLEEF 196 (1041)
T ss_pred CCc-ccCchHhhhhhhh----cCCceEEEEeecCCCcchHHHHHHHHHHHhc----CeEEeeChhhhhcchhHHHHHHHh
Confidence 344 7889999986543 3789999999999999999888777777654 379999999999999999998766
Q ss_pred cccCceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcCCCcEEEeCcHHHHHHHhhcCCCCCCCccEEEEec
Q 017196 126 PAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDE 205 (375)
Q Consensus 126 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiV~Tp~~l~~~l~~~~~~~~~~~~~vIiDE 205 (375)
.+ |++.+|+-+. .....-+|.|.+-|.+++.+ +.--++.+.+||+||
T Consensus 197 ~D----VGLMTGDVTI----------------------------nP~ASCLVMTTEILRsMLYR-GSEvmrEVaWVIFDE 243 (1041)
T KOG0948|consen 197 KD----VGLMTGDVTI----------------------------NPDASCLVMTTEILRSMLYR-GSEVMREVAWVIFDE 243 (1041)
T ss_pred cc----cceeecceee----------------------------CCCCceeeeHHHHHHHHHhc-cchHhheeeeEEeee
Confidence 65 4456666543 23346899999999999888 556789999999999
Q ss_pred chhhhhHhHHhHHHHHHHhhhcccccccccccccccccccccccccccccccCCCCCCCCceeEEEEEEecCCCchhhhc
Q 017196 206 TDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQ 285 (375)
Q Consensus 206 ~h~l~~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~~~~~~~ 285 (375)
+|.|-+...+-.++.-+-++|. +...+++|||+|+. .+++.
T Consensus 244 IHYMRDkERGVVWEETIIllP~--------------------------------------~vr~VFLSATiPNA-~qFAe 284 (1041)
T KOG0948|consen 244 IHYMRDKERGVVWEETIILLPD--------------------------------------NVRFVFLSATIPNA-RQFAE 284 (1041)
T ss_pred ehhccccccceeeeeeEEeccc--------------------------------------cceEEEEeccCCCH-HHHHH
Confidence 9999777654444443334444 77899999999864 44544
Q ss_pred ccc---CCCeEEecCCccccCcccceeEEEe---------ccCC--C---------------------------------
Q 017196 286 LDL---HHPLFLTTGETRYKLPERLESYKLI---------CESK--L--------------------------------- 318 (375)
Q Consensus 286 ~~~---~~~~~i~~~~~~~~~~~~i~~~~~~---------~~~~--~--------------------------------- 318 (375)
+.. ..|..+.+..-+ |..++||.+. ++++ .
T Consensus 285 WI~~ihkQPcHVVYTdyR---PTPLQHyifP~ggdGlylvVDek~~FrednF~~am~~l~~~~~~~~~~~~~~k~~kG~~ 361 (1041)
T KOG0948|consen 285 WICHIHKQPCHVVYTDYR---PTPLQHYIFPAGGDGLYLVVDEKGKFREDNFQKAMSVLRKAGESDGKKKANKKGRKGGT 361 (1041)
T ss_pred HHHHHhcCCceEEeecCC---CCcceeeeecCCCCeeEEEEecccccchHHHHHHHHHhhccCCCccccccccccccCCc
Confidence 432 367766665433 3344444332 1111 0
Q ss_pred --------cHHHHHHHHHhcCCCeEEEEcCChhhHHHHHHHHHH
Q 017196 319 --------KPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNH 354 (375)
Q Consensus 319 --------k~~~l~~ll~~~~~~k~lIF~~s~~~a~~l~~~L~~ 354 (375)
.+..++..+-.....++|||+-|+++|+.+|-.+.+
T Consensus 362 ~~~~~~~s~i~kiVkmi~~~~~~PVIvFSFSkkeCE~~Alqm~k 405 (1041)
T KOG0948|consen 362 GGKGPGDSDIYKIVKMIMERNYLPVIVFSFSKKECEAYALQMSK 405 (1041)
T ss_pred CCCCCCcccHHHHHHHHHhhcCCceEEEEecHhHHHHHHHhhcc
Confidence 011222333333446899999999999999998874
No 108
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=99.61 E-value=3.1e-14 Score=145.76 Aligned_cols=137 Identities=19% Similarity=0.225 Sum_probs=90.8
Q ss_pred CccHhhHHHHHHhhCCCCC------CCCEEEECCCCCchHHHhHHHHHHHhhhcccCCceEEEEcccHHHHHHHHHHHHH
Q 017196 50 SLFPVQVAVWQETIGPGLF------ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAA 123 (375)
Q Consensus 50 ~~~~~Q~~~~~~~~~~~~~------~~~~ii~a~TGsGKTl~~~l~il~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~ 123 (375)
-++++|.+|+..++..+.. ++..+|..+||||||++++..+...+.. .+.+++|||+|+.+|..|+.+.+..
T Consensus 238 ~~r~~Q~~av~~~~~~~~~~~~~~~~~~gli~~~TGsGKT~t~~~la~~l~~~--~~~~~vl~lvdR~~L~~Q~~~~f~~ 315 (667)
T TIGR00348 238 YQRYMQYRAVKKIVESITRKTWGKDERGGLIWHTQGSGKTLTMLFAARKALEL--LKNPKVFFVVDRRELDYQLMKEFQS 315 (667)
T ss_pred ehHHHHHHHHHHHHHHHHhcccCCCCceeEEEEecCCCccHHHHHHHHHHHhh--cCCCeEEEEECcHHHHHHHHHHHHh
Confidence 3799999999998766544 3579999999999999876655443322 3456899999999999999999998
Q ss_pred hccccCceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhc-CCCcEEEeCcHHHHHHHhhc-CCCCCCCc-cE
Q 017196 124 IAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQ-SAVDILVATPGRLMDHINAT-RGFTLEHL-CY 200 (375)
Q Consensus 124 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~IiV~Tp~~l~~~l~~~-~~~~~~~~-~~ 200 (375)
+..... .+..+. .. ....+. ....|+|+|.+++...+... ..+..... .+
T Consensus 316 ~~~~~~------~~~~s~-~~--------------------L~~~l~~~~~~iivtTiQk~~~~~~~~~~~~~~~~~~~l 368 (667)
T TIGR00348 316 LQKDCA------ERIESI-AE--------------------LKRLLEKDDGGIIITTIQKFDKKLKEEEEKFPVDRKEVV 368 (667)
T ss_pred hCCCCC------cccCCH-HH--------------------HHHHHhCCCCCEEEEEhHHhhhhHhhhhhccCCCCCCEE
Confidence 764210 111111 11 111222 23689999999997644331 11221112 28
Q ss_pred EEEecchhhhhHhHH
Q 017196 201 LVVDETDRLLREAYQ 215 (375)
Q Consensus 201 vIiDE~h~l~~~~~~ 215 (375)
||+||||+.....+.
T Consensus 369 vIvDEaHrs~~~~~~ 383 (667)
T TIGR00348 369 VIFDEAHRSQYGELA 383 (667)
T ss_pred EEEEcCccccchHHH
Confidence 999999987555543
No 109
>KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair]
Probab=99.54 E-value=3.2e-14 Score=133.70 Aligned_cols=241 Identities=19% Similarity=0.146 Sum_probs=159.0
Q ss_pred CCccHhhHHHHHHhhCCCCCCCCEEEECCCCCchHHHhHHHHHHHhhhcccCCceEEEEcccHHHHHHHHHHHHHhcccc
Q 017196 49 SSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAV 128 (375)
Q Consensus 49 ~~~~~~Q~~~~~~~~~~~~~~~~~ii~a~TGsGKTl~~~l~il~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~ 128 (375)
..++|||..++..++.+- .-+..+|..|+|+|||++-+ .+...++ .++|+||.+---++||...++.|+...
T Consensus 301 t~iRpYQEksL~KMFGNg-RARSGiIVLPCGAGKtLVGv-TAa~tik------K~clvLcts~VSVeQWkqQfk~wsti~ 372 (776)
T KOG1123|consen 301 TQIRPYQEKSLSKMFGNG-RARSGIIVLPCGAGKTLVGV-TAACTIK------KSCLVLCTSAVSVEQWKQQFKQWSTIQ 372 (776)
T ss_pred cccCchHHHHHHHHhCCC-cccCceEEEecCCCCceeee-eeeeeec------ccEEEEecCccCHHHHHHHHHhhcccC
Confidence 368999999999988622 12578999999999998642 2222222 259999999999999999999998877
Q ss_pred CceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcCCCcEEEeCcHHHHHHHhhcC-------CCCCCCccEE
Q 017196 129 GLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATR-------GFTLEHLCYL 201 (375)
Q Consensus 129 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiV~Tp~~l~~~l~~~~-------~~~~~~~~~v 201 (375)
+-.++.++++.. +....++.|+|+|+..+...-++.- .+.-+.+.++
T Consensus 373 d~~i~rFTsd~K--------------------------e~~~~~~gvvvsTYsMva~t~kRS~eaek~m~~l~~~EWGll 426 (776)
T KOG1123|consen 373 DDQICRFTSDAK--------------------------ERFPSGAGVVVTTYSMVAYTGKRSHEAEKIMDFLRGREWGLL 426 (776)
T ss_pred ccceEEeecccc--------------------------ccCCCCCcEEEEeeehhhhcccccHHHHHHHHHHhcCeeeeE
Confidence 778888887753 2356788999999876643211100 0234678999
Q ss_pred EEecchhhhhHhHHhHHHHHHHhhhcccccccccccccccccccccccccccccccCCCCCCCCceeEEEEEEecCCCch
Q 017196 202 VVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPN 281 (375)
Q Consensus 202 IiDE~h~l~~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~~~ 281 (375)
|+||+|.+.+..|+..+..+..+. .++++||+-..-.
T Consensus 427 llDEVHvvPA~MFRRVlsiv~aHc-------------------------------------------KLGLTATLvREDd 463 (776)
T KOG1123|consen 427 LLDEVHVVPAKMFRRVLSIVQAHC-------------------------------------------KLGLTATLVREDD 463 (776)
T ss_pred EeehhccchHHHHHHHHHHHHHHh-------------------------------------------hccceeEEeeccc
Confidence 999999999999988888777664 3688999864333
Q ss_pred hhh-ccccCCCeEEecCCccccCccc--------------------------ceeEEEeccCCCcHHHHHHHHHhc--CC
Q 017196 282 KLA-QLDLHHPLFLTTGETRYKLPER--------------------------LESYKLICESKLKPLYLVALLQSL--GE 332 (375)
Q Consensus 282 ~~~-~~~~~~~~~i~~~~~~~~~~~~--------------------------i~~~~~~~~~~~k~~~l~~ll~~~--~~ 332 (375)
... -+|+..|........+...... -+.+..++-+..|...-.-+|+-+ .+
T Consensus 464 KI~DLNFLIGPKlYEAnWmdL~~kGhIA~VqCaEVWCpMt~eFy~eYL~~~t~kr~lLyvMNP~KFraCqfLI~~HE~Rg 543 (776)
T KOG1123|consen 464 KITDLNFLIGPKLYEANWMDLQKKGHIAKVQCAEVWCPMTPEFYREYLRENTRKRMLLYVMNPNKFRACQFLIKFHERRG 543 (776)
T ss_pred cccccceeecchhhhccHHHHHhCCceeEEeeeeeecCCCHHHHHHHHhhhhhhhheeeecCcchhHHHHHHHHHHHhcC
Confidence 322 2344455544332211111111 111222222344555444555533 57
Q ss_pred CeEEEEcCChhhHHHHHHHHHHhcCCcceEEecccccccccc
Q 017196 333 EKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVR 374 (375)
Q Consensus 333 ~k~lIF~~s~~~a~~l~~~L~~~g~~~~~~~~lh~~~~~~~R 374 (375)
+|+|||..++-..+..|-.|.+ -++-|.+++.+|
T Consensus 544 DKiIVFsDnvfALk~YAikl~K--------pfIYG~Tsq~ER 577 (776)
T KOG1123|consen 544 DKIIVFSDNVFALKEYAIKLGK--------PFIYGPTSQNER 577 (776)
T ss_pred CeEEEEeccHHHHHHHHHHcCC--------ceEECCCchhHH
Confidence 7999999988877777776652 256677777776
No 110
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=99.53 E-value=1.8e-13 Score=144.29 Aligned_cols=105 Identities=20% Similarity=0.288 Sum_probs=85.3
Q ss_pred CCCCCHHHHHHHHhCCCCCccHhhHHHHHHhhCCCCCCCCEEEECCCCCchHHHhHHHHHHHhhhcccCCceEEEEcccH
Q 017196 32 LPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTR 111 (375)
Q Consensus 32 ~~~l~~~i~~~l~~~g~~~~~~~Q~~~~~~~~~~~~~~~~~ii~a~TGsGKTl~~~l~il~~l~~~~~~~~~~lil~Pt~ 111 (375)
++.+.+.+.+.+...|| ++++.|.+..+.+...+.+++++++.||||+|||++|++|++..... +.+++|.+||+
T Consensus 228 ~~~~~~~~~~~~~~~~~-~~r~~Q~~~~~~i~~~~~~~~~~~~eA~TG~GKT~ayLlp~~~~~~~----~~~vvi~t~t~ 302 (850)
T TIGR01407 228 YNTLSSLFSKNIDRLGL-EYRPEQLKLAELVLDQLTHSEKSLIEAPTGTGKTLGYLLPALYYAIT----EKPVVISTNTK 302 (850)
T ss_pred cccccHHHHHhhhhcCC-ccCHHHHHHHHHHHHHhccCCcEEEECCCCCchhHHHHHHHHHHhcC----CCeEEEEeCcH
Confidence 44466678888888898 68999999888788788889999999999999999999999887762 23799999999
Q ss_pred HHHHHHHH-HHHHhcccc--CceEEEeecCCch
Q 017196 112 DLALQVKD-VFAAIAPAV--GLSVGLAVGQSSI 141 (375)
Q Consensus 112 ~L~~Q~~~-~~~~~~~~~--~~~v~~~~~~~~~ 141 (375)
+|.+|+.. .+..+.... ++++..+.|+..+
T Consensus 303 ~Lq~Ql~~~~~~~l~~~~~~~~~~~~~kG~~~y 335 (850)
T TIGR01407 303 VLQSQLLEKDIPLLNEILNFKINAALIKGKSNY 335 (850)
T ss_pred HHHHHHHHHHHHHHHHHcCCCceEEEEEcchhh
Confidence 99999865 566555443 4888888888654
No 111
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]
Probab=99.51 E-value=4.5e-13 Score=131.67 Aligned_cols=290 Identities=19% Similarity=0.176 Sum_probs=175.2
Q ss_pred CccHhhHHHHHHhhCCCCCCCCEEEECCCCCchHHHhHHHHHHHhhhcc-cCCceEEEEcccHHHHHHHHHHHHHhcccc
Q 017196 50 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRA-VRCLRALVVLPTRDLALQVKDVFAAIAPAV 128 (375)
Q Consensus 50 ~~~~~Q~~~~~~~~~~~~~~~~~ii~a~TGsGKTl~~~l~il~~l~~~~-~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~ 128 (375)
.+++||.+.++|++....+|-|+|+...+|.|||+. .++.+..+.... .++ .-||++|--.|. .|.+.+++|++
T Consensus 167 ~lr~YQveGlnWLi~l~engingILaDEMGLGKTlQ-tIs~l~yl~~~~~~~G-PfLVi~P~StL~-NW~~Ef~rf~P-- 241 (971)
T KOG0385|consen 167 ELRDYQLEGLNWLISLYENGINGILADEMGLGKTLQ-TISLLGYLKGRKGIPG-PFLVIAPKSTLD-NWMNEFKRFTP-- 241 (971)
T ss_pred ccchhhhccHHHHHHHHhcCcccEeehhcccchHHH-HHHHHHHHHHhcCCCC-CeEEEeeHhhHH-HHHHHHHHhCC--
Confidence 799999999999998888899999999999999987 466666666532 244 489999987775 49999999999
Q ss_pred CceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcCCCcEEEeCcHHHHHHHhhcCCCCCCCccEEEEecchh
Q 017196 129 GLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDR 208 (375)
Q Consensus 129 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiV~Tp~~l~~~l~~~~~~~~~~~~~vIiDE~h~ 208 (375)
++++..++|+........+- -......+|+|||++..+.--. .+.--.++++||||||+
T Consensus 242 ~l~~~~~~Gdk~eR~~~~r~------------------~~~~~~fdV~iTsYEi~i~dk~---~lk~~~W~ylvIDEaHR 300 (971)
T KOG0385|consen 242 SLNVVVYHGDKEERAALRRD------------------IMLPGRFDVCITSYEIAIKDKS---FLKKFNWRYLVIDEAHR 300 (971)
T ss_pred CcceEEEeCCHHHHHHHHHH------------------hhccCCCceEeehHHHHHhhHH---HHhcCCceEEEechhhh
Confidence 68999999986433332210 0123468999999987654311 12233678999999999
Q ss_pred hhhHhHHhHHHHHHHhhhcc------------------------cccccccccccccc------------------cccc
Q 017196 209 LLREAYQAWLPTVLQLTRSD------------------------NENRFSDASTFLPS------------------AFGS 246 (375)
Q Consensus 209 l~~~~~~~~l~~i~~~l~~~------------------------~~~~~~~~~~~~~~------------------~~~~ 246 (375)
+-+.. ..+..++..+... -+.-+... ..+.+ ....
T Consensus 301 iKN~~--s~L~~~lr~f~~~nrLLlTGTPLQNNL~ELWaLLnFllPdiF~~~-e~F~swF~~~~~~~~~e~v~~Lh~vL~ 377 (971)
T KOG0385|consen 301 IKNEK--SKLSKILREFKTDNRLLLTGTPLQNNLHELWALLNFLLPDIFNSA-EDFDSWFDFTNCEGDQELVSRLHKVLR 377 (971)
T ss_pred hcchh--hHHHHHHHHhcccceeEeeCCcccccHHHHHHHHHhhchhhccCH-HHHHHHHcccccccCHHHHHHHHhhhh
Confidence 94432 1122222222211 11101100 00001 1223
Q ss_pred cccccccccccCCCCCCCCcee-EEEEEEecC--------CCchhh-----------------hccccCCCeEEecCCcc
Q 017196 247 LKTIRRCGVERGFKDKPYPRLV-KMVLSATLT--------QDPNKL-----------------AQLDLHHPLFLTTGETR 300 (375)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~q-~i~~SATl~--------~~~~~~-----------------~~~~~~~~~~i~~~~~~ 300 (375)
++.+||.+++....-++-..+. .+.||.--- .++..+ .++....|..+... ..
T Consensus 378 pFlLRR~K~dVe~sLppKkE~~iyvgms~mQkk~Y~~iL~kdl~~~n~~~~~~k~kL~NI~mQLRKccnHPYLF~g~-eP 456 (971)
T KOG0385|consen 378 PFLLRRIKSDVEKSLPPKKELIIYVGMSSMQKKWYKAILMKDLDALNGEGKGEKTKLQNIMMQLRKCCNHPYLFDGA-EP 456 (971)
T ss_pred HHHHHHHHHhHhhcCCCcceeeEeccchHHHHHHHHHHHHhcchhhcccccchhhHHHHHHHHHHHhcCCccccCCC-CC
Confidence 4467777776665522222211 122222110 000000 11111222222211 10
Q ss_pred ccCcccceeEEEeccCCCcHHHHHHHHHhc--CCCeEEEEcCChhhHHHHHHHHHHhcCCcceEEeccccccccccC
Q 017196 301 YKLPERLESYKLICESKLKPLYLVALLQSL--GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRR 375 (375)
Q Consensus 301 ~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~--~~~k~lIF~~s~~~a~~l~~~L~~~g~~~~~~~~lh~~~~~~~R~ 375 (375)
..|-. .--..+....|..+|..++..+ .++++|||..=....+-+-+|.. -+++...-+.|.++.++|.
T Consensus 457 -g~pyt--tdehLv~nSGKm~vLDkLL~~Lk~~GhRVLIFSQmt~mLDILeDyc~---~R~y~ycRiDGSt~~eeR~ 527 (971)
T KOG0385|consen 457 -GPPYT--TDEHLVTNSGKMLVLDKLLPKLKEQGHRVLIFSQMTRMLDILEDYCM---LRGYEYCRLDGSTSHEERE 527 (971)
T ss_pred -CCCCC--cchHHHhcCcceehHHHHHHHHHhCCCeEEEeHHHHHHHHHHHHHHH---hcCceeEeecCCCCcHHHH
Confidence 00111 1112345667888888888865 57899999999888888888888 4559999999999999883
No 112
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=99.51 E-value=3e-13 Score=135.47 Aligned_cols=86 Identities=19% Similarity=0.227 Sum_probs=70.3
Q ss_pred hHHHHHHhhCCCCCCCCEEEECCCCCchHHHhHHHHHHHhhhcccCCceEEEEcccHHHHHHHHHHHHHhc-cc--cCce
Q 017196 55 QVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIA-PA--VGLS 131 (375)
Q Consensus 55 Q~~~~~~~~~~~~~~~~~ii~a~TGsGKTl~~~l~il~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~-~~--~~~~ 131 (375)
|.+.+..+...+.+++.+++.|+||+|||++|++|++..+... .+.++||++||++|++|+.+.+..+. .. .+++
T Consensus 2 Q~~~~~~i~~al~~~~~lliEA~TGtGKTlAYLlpal~~~~~~--~~~rvlIstpT~~Lq~Ql~~~l~~l~~~~l~~~i~ 79 (636)
T TIGR03117 2 QALFYLNCLTSLRQKRIGMLEASTGVGKTLAMIMAALTMLKER--PDQKIAIAVPTLALMGQLWSELERLTAEGLAGPVQ 79 (636)
T ss_pred HHHHHHHHHHHHhcCCeEEEEcCCCCcHHHHHHHHHHHHHHhc--cCceEEEECCcHHHHHHHHHHHHHHHHhhcCCCee
Confidence 6777777777777889999999999999999999999887643 23589999999999999999988887 32 3677
Q ss_pred EEEeecCCchH
Q 017196 132 VGLAVGQSSIA 142 (375)
Q Consensus 132 v~~~~~~~~~~ 142 (375)
+..+.|+.++-
T Consensus 80 ~~~lkGr~nYl 90 (636)
T TIGR03117 80 AGFFPGSQEFV 90 (636)
T ss_pred EEEEECCcccc
Confidence 88888875543
No 113
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=99.50 E-value=2.6e-13 Score=137.74 Aligned_cols=130 Identities=25% Similarity=0.279 Sum_probs=100.5
Q ss_pred CCCCCccHhhHHHHHHhhCCCCCCCCEEEECCCCCchHHHhHHHHHHHhhhcccCCceEEEEcccHHHHHHHHHHHHHhc
Q 017196 46 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIA 125 (375)
Q Consensus 46 ~g~~~~~~~Q~~~~~~~~~~~~~~~~~ii~a~TGsGKTl~~~l~il~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~ 125 (375)
+|. .|++.|..+- + .+..|+ +..+.||+|||+++++|++.....+. .+-+++||-.||.|=+..+..+.
T Consensus 77 ~g~-~~~dvQlig~---l-~l~~G~--iaEm~TGEGKTLvA~l~a~l~al~G~----~v~vvT~neyLA~Rd~e~~~~~~ 145 (796)
T PRK12906 77 LGL-RPFDVQIIGG---I-VLHEGN--IAEMKTGEGKTLTATLPVYLNALTGK----GVHVVTVNEYLSSRDATEMGELY 145 (796)
T ss_pred hCC-CCchhHHHHH---H-HHhcCC--cccccCCCCCcHHHHHHHHHHHHcCC----CeEEEeccHHHHHhhHHHHHHHH
Confidence 575 8999998873 2 223454 89999999999999999988887763 58999999999999999999999
Q ss_pred cccCceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcCCCcEEEeCcHHH-HHHHhhcCC-----CCCCCcc
Q 017196 126 PAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRL-MDHINATRG-----FTLEHLC 199 (375)
Q Consensus 126 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiV~Tp~~l-~~~l~~~~~-----~~~~~~~ 199 (375)
...|+++..+.++.+..... ..-.++|+-||...| .++++..-. .-.+.+.
T Consensus 146 ~~LGl~vg~i~~~~~~~~r~-----------------------~~y~~dI~Y~t~~e~gfDyLRD~m~~~~~~~v~r~~~ 202 (796)
T PRK12906 146 RWLGLTVGLNLNSMSPDEKR-----------------------AAYNCDITYSTNSELGFDYLRDNMVVYKEQMVQRPLN 202 (796)
T ss_pred HhcCCeEEEeCCCCCHHHHH-----------------------HHhcCCCeecCCccccccchhhccccchhhhhccCcc
Confidence 99999999998876544332 123579999997655 345544211 1246788
Q ss_pred EEEEecchhh
Q 017196 200 YLVVDETDRL 209 (375)
Q Consensus 200 ~vIiDE~h~l 209 (375)
+.||||+|.+
T Consensus 203 ~aIvDEvDSi 212 (796)
T PRK12906 203 YAIVDEVDSI 212 (796)
T ss_pred eeeeccchhe
Confidence 9999999998
No 114
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.43 E-value=2.2e-12 Score=134.62 Aligned_cols=158 Identities=17% Similarity=0.192 Sum_probs=109.1
Q ss_pred CCCCCccHhhHHHHHHhhCCCCCCCCEEEECCCCCchHHHhHHHHHHHhhhcccCCceEEEEcccHHHHHHH-HHHHHHh
Q 017196 46 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQV-KDVFAAI 124 (375)
Q Consensus 46 ~g~~~~~~~Q~~~~~~~~~~~~~~~~~ii~a~TGsGKTl~~~l~il~~l~~~~~~~~~~lil~Pt~~L~~Q~-~~~~~~~ 124 (375)
-|| ++++-|.+....+...+.+++.+++.|+||+|||++|++|++... .+.+++|++||++|++|+ .+.+..+
T Consensus 242 ~~~-e~R~~Q~~ma~~V~~~l~~~~~~~~eA~tGtGKT~ayllp~l~~~-----~~~~vvI~t~T~~Lq~Ql~~~~i~~l 315 (820)
T PRK07246 242 LGL-EERPKQESFAKLVGEDFHDGPASFIEAQTGIGKTYGYLLPLLAQS-----DQRQIIVSVPTKILQDQIMAEEVKAI 315 (820)
T ss_pred CCC-ccCHHHHHHHHHHHHHHhCCCcEEEECCCCCcHHHHHHHHHHHhc-----CCCcEEEEeCcHHHHHHHHHHHHHHH
Confidence 366 899999998777777777889999999999999999999988754 234799999999999999 4777777
Q ss_pred ccccCceEEEeecCCchHHH--HHHHhhcCc---------------------c-ccCccC--CchhHHHh----------
Q 017196 125 APAVGLSVGLAVGQSSIADE--ISELIKRPK---------------------L-EAGICY--DPEDVLQE---------- 168 (375)
Q Consensus 125 ~~~~~~~v~~~~~~~~~~~~--~~~~~~~~~---------------------~-~~~~~~--~~~~~~~~---------- 168 (375)
....++++..+.|+.++--. ....+..+. + ..+... .....|..
T Consensus 316 ~~~~~~~~~~~kg~~~ylcl~k~~~~l~~~~~~~~~~~~~~~il~Wl~~T~tGD~~El~~~~~~~~~w~~i~~~~~~~~~ 395 (820)
T PRK07246 316 QEVFHIDCHSLKGPQNYLKLDAFYDSLQQNDDNRLVNRYKMQLLVWLTETETGDLDEIKQKQRYAAYFDQLKHDGNLSQS 395 (820)
T ss_pred HHhcCCcEEEEECCcccccHHHHHHHhhccCcchHHHHHHHHHHHHHhcCCCCCHhhccCCccccHHHHHhhccCCCCCC
Confidence 77778888888877544321 111110000 0 000000 01111111
Q ss_pred --------------hcCCCcEEEeCcHHHHHHHhhcCCCCCCCccEEEEecchhhhh
Q 017196 169 --------------LQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLR 211 (375)
Q Consensus 169 --------------~~~~~~IiV~Tp~~l~~~l~~~~~~~~~~~~~vIiDE~h~l~~ 211 (375)
-....+|+|+...-|...+.... .+...+.+||||||++.+
T Consensus 396 cp~~~~cf~~~ar~~a~~AdivItNHall~~~~~~~~--~~p~~~~lIiDEAH~l~~ 450 (820)
T PRK07246 396 SLFYDYDFWKRSYEKAKTARLLITNHAYFLTRVQDDK--DFARNKVLVFDEAQKLML 450 (820)
T ss_pred CCcchhhHHHHHHHHHHhCCEEEEchHHHHHHHhhcc--CCCCCCEEEEECcchhHH
Confidence 12346999999988877664422 256789999999999954
No 115
>KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair]
Probab=99.43 E-value=3.6e-13 Score=132.85 Aligned_cols=303 Identities=18% Similarity=0.138 Sum_probs=186.1
Q ss_pred CCccHhhHHHHHHhhCCCCCCCCEEEECCCCCchHHHhHHHHHHHhhhcccCCceEEEEcccHHHHHHHHHHHHHhcccc
Q 017196 49 SSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAV 128 (375)
Q Consensus 49 ~~~~~~Q~~~~~~~~~~~~~~~~~ii~a~TGsGKTl~~~l~il~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~ 128 (375)
..+.+||+.+++++...-..+...|+...+|.|||.. .+..+..+.....-...||||||. .+..||.+++..+++
T Consensus 204 ~~Lf~yQreGV~WL~~L~~q~~GGILgDeMGLGKTIQ-iisFLaaL~~S~k~~~paLIVCP~-Tii~qW~~E~~~w~p-- 279 (923)
T KOG0387|consen 204 SKLFPYQREGVQWLWELYCQRAGGILGDEMGLGKTIQ-IISFLAALHHSGKLTKPALIVCPA-TIIHQWMKEFQTWWP-- 279 (923)
T ss_pred HHhhHHHHHHHHHHHHHHhccCCCeecccccCccchh-HHHHHHHHhhcccccCceEEEccH-HHHHHHHHHHHHhCc--
Confidence 3688999999999998777888899999999999986 345555555542223469999997 567899999999999
Q ss_pred CceEEEeecCCchHHHHHHHhhcCccccCccCCchhHH-HhhcCCCcEEEeCcHHHHHHHhhcCCCCCCCccEEEEecch
Q 017196 129 GLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVL-QELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETD 207 (375)
Q Consensus 129 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~IiV~Tp~~l~~~l~~~~~~~~~~~~~vIiDE~h 207 (375)
.++|..+++..+...... -.+...-+-++ +.......|+++|++.+.-. . ..+....++++|+||.|
T Consensus 280 ~~rv~ilh~t~s~~r~~~---------~~~~~~~~~~L~r~~~~~~~ilitty~~~r~~--~-d~l~~~~W~y~ILDEGH 347 (923)
T KOG0387|consen 280 PFRVFILHGTGSGARYDA---------SHSSHKKDKLLIRKVATDGGILITTYDGFRIQ--G-DDLLGILWDYVILDEGH 347 (923)
T ss_pred ceEEEEEecCCccccccc---------chhhhhhhhhheeeecccCcEEEEehhhhccc--C-cccccccccEEEecCcc
Confidence 467788888655211100 00000001111 11223468999998765321 1 22445678899999999
Q ss_pred hhhhHh----------------------HHhHHHHHHHhhhcccccccccccccccccccccc-----------------
Q 017196 208 RLLREA----------------------YQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLK----------------- 248 (375)
Q Consensus 208 ~l~~~~----------------------~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~----------------- 248 (375)
.+-+++ ++..|..+++++.-..+.+......+.+.+...+.
T Consensus 348 ~IrNpns~islackki~T~~RiILSGTPiQNnL~ELwsLfDFv~PG~Lgt~~~F~~~f~~pI~~GgyaNAs~~qv~~ayk 427 (923)
T KOG0387|consen 348 RIRNPNSKISLACKKIRTVHRIILSGTPIQNNLTELWSLFDFVFPGKLGTLPVFQQNFEHPINRGGYANASPRQVQTAYK 427 (923)
T ss_pred cccCCccHHHHHHHhccccceEEeeCccccchHHHHHHHhhhccCCcccchHHHHhhhhhheeccccCCCCHHHHHHHHH
Confidence 994322 23445555554443333333333333222222211
Q ss_pred ------------cccccccccCCCCCCCCceeEEEEEEecCCCchhhhccccCC--------------------------
Q 017196 249 ------------TIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHH-------------------------- 290 (375)
Q Consensus 249 ------------~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~~~~~~~~~~~~-------------------------- 290 (375)
.+||++.+..--..+-..-++++|+-|.. ...+...++..
T Consensus 428 ca~~Lr~lI~PylLRR~K~dv~~~~Lp~K~E~VlfC~LT~~--QR~~Y~~fl~s~~v~~i~ng~~~~l~Gi~iLrkICnH 505 (923)
T KOG0387|consen 428 CAVALRDLISPYLLRRMKSDVKGLKLPKKEEIVLFCRLTKL--QRRLYQRFLNSSEVNKILNGKRNCLSGIDILRKICNH 505 (923)
T ss_pred HHHHHHHHhHHHHHHHHHHHhhhccCCCccceEEEEeccHH--HHHHHHHHhhhHHHHHHHcCCccceechHHHHhhcCC
Confidence 55666655544466666678888887753 22222222221
Q ss_pred CeEEecCCccccCcccceeEEEeccCCCcHHHHHHHHHhc--CCCeEEEEcCChhhHHHHHHHHHHhcCCcceEEecccc
Q 017196 291 PLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSL--GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGL 368 (375)
Q Consensus 291 ~~~i~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~--~~~k~lIF~~s~~~a~~l~~~L~~~g~~~~~~~~lh~~ 368 (375)
|......... .. .-..+--......|..++..+++.- ++.++|.|..++.+..-+-.+|.. ..++.+.-+.|.
T Consensus 506 Pdll~~~~~~--~~-~~~D~~g~~k~sGKm~vl~~ll~~W~kqg~rvllFsqs~~mLdilE~fL~~--~~~ysylRmDGt 580 (923)
T KOG0387|consen 506 PDLLDRRDED--EK-QGPDYEGDPKRSGKMKVLAKLLKDWKKQGDRVLLFSQSRQMLDILESFLRR--AKGYSYLRMDGT 580 (923)
T ss_pred cccccCcccc--cc-cCCCcCCChhhcchHHHHHHHHHHHhhCCCEEEEehhHHHHHHHHHHHHHh--cCCceEEEecCC
Confidence 1111111000 00 0000002234557889999998853 577999999999999999999984 345999999999
Q ss_pred cccccc
Q 017196 369 QRQSVR 374 (375)
Q Consensus 369 ~~~~~R 374 (375)
++...|
T Consensus 581 T~~~~R 586 (923)
T KOG0387|consen 581 TPAALR 586 (923)
T ss_pred Cccchh
Confidence 998877
No 116
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=99.42 E-value=2.2e-12 Score=119.18 Aligned_cols=79 Identities=18% Similarity=0.122 Sum_probs=65.9
Q ss_pred CCCCCccHhhHHHHHHhhCCCCCCCCEEEECCCCCchHHHhHHHHHHHhhhccc--CCceEEEEcccHHHHHHHHHHHHH
Q 017196 46 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAV--RCLRALVVLPTRDLALQVKDVFAA 123 (375)
Q Consensus 46 ~g~~~~~~~Q~~~~~~~~~~~~~~~~~ii~a~TGsGKTl~~~l~il~~l~~~~~--~~~~~lil~Pt~~L~~Q~~~~~~~ 123 (375)
+.| .|+|.|.+....+...+..|.++++.||||+|||++|++|++..+...+. .+.+++|+++|..+.+|....+++
T Consensus 5 FPy-~~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~l~~ 83 (289)
T smart00488 5 FPY-EPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEELRK 83 (289)
T ss_pred CCC-CCCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHHHHh
Confidence 456 46999999888888888889999999999999999999999887765432 234799999999999998888877
Q ss_pred hc
Q 017196 124 IA 125 (375)
Q Consensus 124 ~~ 125 (375)
+.
T Consensus 84 ~~ 85 (289)
T smart00488 84 LM 85 (289)
T ss_pred cc
Confidence 64
No 117
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=99.42 E-value=2.2e-12 Score=119.18 Aligned_cols=79 Identities=18% Similarity=0.122 Sum_probs=65.9
Q ss_pred CCCCCccHhhHHHHHHhhCCCCCCCCEEEECCCCCchHHHhHHHHHHHhhhccc--CCceEEEEcccHHHHHHHHHHHHH
Q 017196 46 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAV--RCLRALVVLPTRDLALQVKDVFAA 123 (375)
Q Consensus 46 ~g~~~~~~~Q~~~~~~~~~~~~~~~~~ii~a~TGsGKTl~~~l~il~~l~~~~~--~~~~~lil~Pt~~L~~Q~~~~~~~ 123 (375)
+.| .|+|.|.+....+...+..|.++++.||||+|||++|++|++..+...+. .+.+++|+++|..+.+|....+++
T Consensus 5 FPy-~~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~l~~ 83 (289)
T smart00489 5 FPY-EPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEELRK 83 (289)
T ss_pred CCC-CCCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHHHHh
Confidence 456 46999999888888888889999999999999999999999887765432 234799999999999998888877
Q ss_pred hc
Q 017196 124 IA 125 (375)
Q Consensus 124 ~~ 125 (375)
+.
T Consensus 84 ~~ 85 (289)
T smart00489 84 LM 85 (289)
T ss_pred cc
Confidence 64
No 118
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=99.42 E-value=2.2e-11 Score=124.96 Aligned_cols=235 Identities=20% Similarity=0.179 Sum_probs=139.3
Q ss_pred hhCCCCCCCCEEEECCCCCchHHHhHHHHHHHhhhcccCCceEEEEcccHHHHHHHHHHHH-HhccccCceEEEeecCCc
Q 017196 62 TIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFA-AIAPAVGLSVGLAVGQSS 140 (375)
Q Consensus 62 ~~~~~~~~~~~ii~a~TGsGKTl~~~l~il~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~~~-~~~~~~~~~v~~~~~~~~ 140 (375)
++..+..++-++|+++||||||...=.-+++.-. .....+.+.-|.|--|..+...+. ++....|-.|+.-.-..+
T Consensus 58 i~~ai~~~~vvii~getGsGKTTqlP~~lle~g~---~~~g~I~~tQPRRlAArsvA~RvAeel~~~~G~~VGY~iRfe~ 134 (845)
T COG1643 58 ILKAIEQNQVVIIVGETGSGKTTQLPQFLLEEGL---GIAGKIGCTQPRRLAARSVAERVAEELGEKLGETVGYSIRFES 134 (845)
T ss_pred HHHHHHhCCEEEEeCCCCCChHHHHHHHHHhhhc---ccCCeEEecCchHHHHHHHHHHHHHHhCCCcCceeeEEEEeec
Confidence 4445557788999999999999853222232222 122345666677755555555443 333333333332221111
Q ss_pred hHHHHHHHhhcCccccCccCCchhHHHhhcCCCcEEEeCcHHHHHHHhhcCCCCCCCccEEEEecchhhh-hHhHH-hHH
Q 017196 141 IADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLL-REAYQ-AWL 218 (375)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiV~Tp~~l~~~l~~~~~~~~~~~~~vIiDE~h~l~-~~~~~-~~l 218 (375)
.......|-+.|.+.|+..+... ..++.+++||+||+|+=. +.++. ..+
T Consensus 135 ---------------------------~~s~~Trik~mTdGiLlrei~~D--~~Ls~ys~vIiDEaHERSl~tDilLgll 185 (845)
T COG1643 135 ---------------------------KVSPRTRIKVMTDGILLREIQND--PLLSGYSVVIIDEAHERSLNTDILLGLL 185 (845)
T ss_pred ---------------------------cCCCCceeEEeccHHHHHHHhhC--cccccCCEEEEcchhhhhHHHHHHHHHH
Confidence 12334689999999999999874 458899999999999542 11221 112
Q ss_pred HHHHHhhhcccccccccccccccccccccccccccccccCCCCCCCCceeEEEEEEecCCCchhhhccccCCCeEEecCC
Q 017196 219 PTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGE 298 (375)
Q Consensus 219 ~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~~~~~~~~~~~~~~~i~~~~ 298 (375)
..++...+. .+++|.||||+. .+.+...+-.-|+...-+.
T Consensus 186 k~~~~~rr~--------------------------------------DLKiIimSATld--~~rfs~~f~~apvi~i~GR 225 (845)
T COG1643 186 KDLLARRRD--------------------------------------DLKLIIMSATLD--AERFSAYFGNAPVIEIEGR 225 (845)
T ss_pred HHHHhhcCC--------------------------------------CceEEEEecccC--HHHHHHHcCCCCEEEecCC
Confidence 222222211 478999999994 4556555544444433332
Q ss_pred ccccCcccceeEEEecc-CCC-cHHHHHHHHHh---cCCCeEEEEcCChhhHHHHHHHHHHhc-CCcceEEecccccccc
Q 017196 299 TRYKLPERLESYKLICE-SKL-KPLYLVALLQS---LGEEKCIVFTSSVESTHRLCTLLNHFG-ELRIKIKEYSGLQRQS 372 (375)
Q Consensus 299 ~~~~~~~~i~~~~~~~~-~~~-k~~~l~~ll~~---~~~~k~lIF~~s~~~a~~l~~~L~~~g-~~~~~~~~lh~~~~~~ 372 (375)
.. .++-+|.... .+. -.+.+...++. ...+.+|||.+-..+.+.+++.|.+.. ...+.+..+||.|+.+
T Consensus 226 ~f-----PVei~Y~~~~~~d~~l~~ai~~~v~~~~~~~~GdILvFLpG~~EI~~~~~~L~~~~l~~~~~i~PLy~~L~~~ 300 (845)
T COG1643 226 TY-----PVEIRYLPEAEADYILLDAIVAAVDIHLREGSGSILVFLPGQREIERTAEWLEKAELGDDLEILPLYGALSAE 300 (845)
T ss_pred cc-----ceEEEecCCCCcchhHHHHHHHHHHHhccCCCCCEEEECCcHHHHHHHHHHHHhccccCCcEEeeccccCCHH
Confidence 21 2333332222 222 23344444432 356789999999999999999998611 1468999999999976
Q ss_pred c
Q 017196 373 V 373 (375)
Q Consensus 373 ~ 373 (375)
+
T Consensus 301 e 301 (845)
T COG1643 301 E 301 (845)
T ss_pred H
Confidence 5
No 119
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.33 E-value=1.5e-11 Score=126.43 Aligned_cols=224 Identities=16% Similarity=0.225 Sum_probs=148.1
Q ss_pred CccHhhHHHHHHhhCCCCCCCCEEEECCCCCchHHHhHHHHHHHhhhcccCCceEEEEcccHHHHHHHHHHHH-Hhcccc
Q 017196 50 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFA-AIAPAV 128 (375)
Q Consensus 50 ~~~~~Q~~~~~~~~~~~~~~~~~ii~a~TGsGKTl~~~l~il~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~~~-~~~~~~ 128 (375)
...|+|.+.++.+++ .+.++++.+|+|||||.++.++++. +....+++++.|..+.+...++.|. ++....
T Consensus 1143 ~~n~iqtqVf~~~y~---~nd~v~vga~~gsgkt~~ae~a~l~-----~~~~~~~vyi~p~~~i~~~~~~~w~~~f~~~~ 1214 (1674)
T KOG0951|consen 1143 DFNPIQTQVFTSLYN---TNDNVLVGAPNGSGKTACAELALLR-----PDTIGRAVYIAPLEEIADEQYRDWEKKFSKLL 1214 (1674)
T ss_pred ccCCceEEEEeeeec---ccceEEEecCCCCchhHHHHHHhcC-----CccceEEEEecchHHHHHHHHHHHHHhhcccc
Confidence 347889888776665 6788999999999999999888876 3355689999999999999988886 455556
Q ss_pred CceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcCCCcEEEeCcHHHHHHHhhcCCCCCCCccEEEEecchh
Q 017196 129 GLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDR 208 (375)
Q Consensus 129 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiV~Tp~~l~~~l~~~~~~~~~~~~~vIiDE~h~ 208 (375)
|+.++.+.|..+.+-. +....+|+++||++.-.+ + ....+++.|.||+|.
T Consensus 1215 G~~~~~l~ge~s~~lk------------------------l~~~~~vii~tpe~~d~l-q-----~iQ~v~l~i~d~lh~ 1264 (1674)
T KOG0951|consen 1215 GLRIVKLTGETSLDLK------------------------LLQKGQVIISTPEQWDLL-Q-----SIQQVDLFIVDELHL 1264 (1674)
T ss_pred CceEEecCCccccchH------------------------HhhhcceEEechhHHHHH-h-----hhhhcceEeeehhhh
Confidence 8999999988765433 234459999999986443 3 345788999999998
Q ss_pred hhhHhHHhHH------HHHHHhhhcccccccccccccccccccccccccccccccCCCCCCCCceeEEEEEEecCCCchh
Q 017196 209 LLREAYQAWL------PTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNK 282 (375)
Q Consensus 209 l~~~~~~~~l------~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~~~~ 282 (375)
+. ..++..+ ..+...+.. +++++.+|..+.+ +..
T Consensus 1265 ig-g~~g~v~evi~S~r~ia~q~~k--------------------------------------~ir~v~ls~~lan-a~d 1304 (1674)
T KOG0951|consen 1265 IG-GVYGAVYEVICSMRYIASQLEK--------------------------------------KIRVVALSSSLAN-ARD 1304 (1674)
T ss_pred hc-ccCCceEEEEeeHHHHHHHHHh--------------------------------------heeEEEeehhhcc-chh
Confidence 85 3223222 222222222 5678999988864 333
Q ss_pred hhccccCCCeEEecCCccccCcccceeEEEeccC-CCcH----HHHHHHHHhc--CCCeEEEEcCChhhHHHHHHHHH
Q 017196 283 LAQLDLHHPLFLTTGETRYKLPERLESYKLICES-KLKP----LYLVALLQSL--GEEKCIVFTSSVESTHRLCTLLN 353 (375)
Q Consensus 283 ~~~~~~~~~~~i~~~~~~~~~~~~i~~~~~~~~~-~~k~----~~l~~ll~~~--~~~k~lIF~~s~~~a~~l~~~L~ 353 (375)
+ .+......++...+....|..++-..+.... .... +..+..+.++ .++++++|++++++|..++.-|-
T Consensus 1305 ~--ig~s~~~v~Nf~p~~R~~Pl~i~i~~~~~~~~~~~~~am~~~~~~ai~~~a~~~k~~~vf~p~rk~~~~~a~~~~ 1380 (1674)
T KOG0951|consen 1305 L--IGASSSGVFNFSPSVRPVPLEIHIQSVDISHFESRMLAMTKPTYTAIVRHAGNRKPAIVFLPTRKHARLVAVDLV 1380 (1674)
T ss_pred h--ccccccceeecCcccCCCceeEEEEEeccchhHHHHHHhhhhHHHHHHHHhcCCCCeEEEeccchhhhhhhhccc
Confidence 3 3333444555554443334333332222211 1111 1112223332 56789999999999999988664
No 120
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=99.30 E-value=1.1e-11 Score=99.95 Aligned_cols=106 Identities=19% Similarity=0.149 Sum_probs=67.5
Q ss_pred CCCCCEEEECCCCCchHHHhHHHHHHHhhhcccCCceEEEEcccHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHH
Q 017196 67 LFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEIS 146 (375)
Q Consensus 67 ~~~~~~ii~a~TGsGKTl~~~l~il~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 146 (375)
.+|+--++...+|+|||.-.+--++..... ++.++|+|.|||.++.++.+.++.. ++++..-.-+.
T Consensus 2 ~kg~~~~~d~hpGaGKTr~vlp~~~~~~i~---~~~rvLvL~PTRvva~em~~aL~~~----~~~~~t~~~~~------- 67 (148)
T PF07652_consen 2 RKGELTVLDLHPGAGKTRRVLPEIVREAIK---RRLRVLVLAPTRVVAEEMYEALKGL----PVRFHTNARMR------- 67 (148)
T ss_dssp STTEEEEEE--TTSSTTTTHHHHHHHHHHH---TT--EEEEESSHHHHHHHHHHTTTS----SEEEESTTSS--------
T ss_pred CCCceeEEecCCCCCCcccccHHHHHHHHH---ccCeEEEecccHHHHHHHHHHHhcC----CcccCceeeec-------
Confidence 356667889999999998654434433333 3348999999999999999988754 22221111000
Q ss_pred HHhhcCccccCccCCchhHHHhhcCCCcEEEeCcHHHHHHHhhcCCCCCCCccEEEEecchhh
Q 017196 147 ELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRL 209 (375)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiV~Tp~~l~~~l~~~~~~~~~~~~~vIiDE~h~l 209 (375)
...++.-|-|.|...+...+.+ ......+++||+||||..
T Consensus 68 ---------------------~~~g~~~i~vMc~at~~~~~~~--p~~~~~yd~II~DEcH~~ 107 (148)
T PF07652_consen 68 ---------------------THFGSSIIDVMCHATYGHFLLN--PCRLKNYDVIIMDECHFT 107 (148)
T ss_dssp ------------------------SSSSEEEEEHHHHHHHHHT--SSCTTS-SEEEECTTT--
T ss_pred ---------------------cccCCCcccccccHHHHHHhcC--cccccCccEEEEeccccC
Confidence 1124557899999998887766 345689999999999965
No 121
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=99.28 E-value=9.6e-12 Score=115.71 Aligned_cols=131 Identities=20% Similarity=0.175 Sum_probs=82.9
Q ss_pred hhHHHHHHhhCCC---------CCCCCEEEECCCCCchHHHhHHHHHHHhhhcccC--CceEEEEcccHHHHHHHHHHHH
Q 017196 54 VQVAVWQETIGPG---------LFERDLCINSPTGSGKTLSYALPIVQTLSNRAVR--CLRALVVLPTRDLALQVKDVFA 122 (375)
Q Consensus 54 ~Q~~~~~~~~~~~---------~~~~~~ii~a~TGsGKTl~~~l~il~~l~~~~~~--~~~~lil~Pt~~L~~Q~~~~~~ 122 (375)
||.+++.+++... ...+.++++..+|+|||..++. ++..+...... ...+||++|. .+..||..++.
T Consensus 1 ~Q~~~v~~m~~~~~~~~~~~~~~~~~g~lL~de~GlGKT~~~i~-~~~~l~~~~~~~~~~~~LIv~P~-~l~~~W~~E~~ 78 (299)
T PF00176_consen 1 HQLEAVRWMLDRELVEEYPNSESPPRGGLLADEMGLGKTITAIA-LISYLKNEFPQRGEKKTLIVVPS-SLLSQWKEEIE 78 (299)
T ss_dssp HHHHHHHHHHHHH----TTSSSTTT-EEEE---TTSSHHHHHHH-HHHHHHHCCTTSS-S-EEEEE-T-TTHHHHHHHHH
T ss_pred CHHHHHHHHHHHhhhhcccccccCCCCEEEEECCCCCchhhhhh-hhhhhhhccccccccceeEeecc-chhhhhhhhhc
Confidence 6888887776543 4556799999999999987544 44444433211 1249999999 88899999999
Q ss_pred HhccccCceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcCCCcEEEeCcHHHH-----HHHhhcCCCCCCC
Q 017196 123 AIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLM-----DHINATRGFTLEH 197 (375)
Q Consensus 123 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiV~Tp~~l~-----~~l~~~~~~~~~~ 197 (375)
++.....+++..+.|....... ........+++++|++.+. ..... +.--.
T Consensus 79 ~~~~~~~~~v~~~~~~~~~~~~---------------------~~~~~~~~~vvi~ty~~~~~~~~~~~~~~---l~~~~ 134 (299)
T PF00176_consen 79 KWFDPDSLRVIIYDGDSERRRL---------------------SKNQLPKYDVVITTYETLRKARKKKDKED---LKQIK 134 (299)
T ss_dssp HHSGT-TS-EEEESSSCHHHHT---------------------TSSSCCCSSEEEEEHHHHH--TSTHTTHH---HHTSE
T ss_pred cccccccccccccccccccccc---------------------cccccccceeeeccccccccccccccccc---ccccc
Confidence 9986556777777776511111 1122356899999999888 11111 11234
Q ss_pred ccEEEEecchhhh
Q 017196 198 LCYLVVDETDRLL 210 (375)
Q Consensus 198 ~~~vIiDE~h~l~ 210 (375)
+++||+||+|.+-
T Consensus 135 ~~~vIvDEaH~~k 147 (299)
T PF00176_consen 135 WDRVIVDEAHRLK 147 (299)
T ss_dssp EEEEEETTGGGGT
T ss_pred ceeEEEecccccc
Confidence 8899999999884
No 122
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=99.27 E-value=1e-10 Score=118.41 Aligned_cols=128 Identities=21% Similarity=0.214 Sum_probs=99.6
Q ss_pred CCccHhhHHHHHHhhCCCCCCCCEEEECCCCCchHHHhHHHHHHHhhhcccCCceEEEEcccHHHHHHHHHHHHHhcccc
Q 017196 49 SSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAV 128 (375)
Q Consensus 49 ~~~~~~Q~~~~~~~~~~~~~~~~~ii~a~TGsGKTl~~~l~il~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~ 128 (375)
..+++-|..|+..+...+....-.++.+.||||||.+|+-.+-..+..+ ..+|+|+|-++|..|+...++..+
T Consensus 197 ~~Ln~~Q~~a~~~i~~~~~~~~~~Ll~GvTGSGKTEvYl~~i~~~L~~G----kqvLvLVPEI~Ltpq~~~rf~~rF--- 269 (730)
T COG1198 197 LALNQEQQAAVEAILSSLGGFAPFLLDGVTGSGKTEVYLEAIAKVLAQG----KQVLVLVPEIALTPQLLARFKARF--- 269 (730)
T ss_pred cccCHHHHHHHHHHHHhcccccceeEeCCCCCcHHHHHHHHHHHHHHcC----CEEEEEeccccchHHHHHHHHHHh---
Confidence 3678899999998886542235689999999999999977666666554 379999999999999999998765
Q ss_pred CceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcCCCcEEEeCcHHHHHHHhhcCCCCCCCccEEEEecchh
Q 017196 129 GLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDR 208 (375)
Q Consensus 129 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiV~Tp~~l~~~l~~~~~~~~~~~~~vIiDE~h~ 208 (375)
+.++..++++.+..+.... +.+...+...|+||| .+.+. .-++++.+|||||=|.
T Consensus 270 g~~v~vlHS~Ls~~er~~~-----------------W~~~~~G~~~vVIGt----RSAlF----~Pf~~LGLIIvDEEHD 324 (730)
T COG1198 270 GAKVAVLHSGLSPGERYRV-----------------WRRARRGEARVVIGT----RSALF----LPFKNLGLIIVDEEHD 324 (730)
T ss_pred CCChhhhcccCChHHHHHH-----------------HHHHhcCCceEEEEe----chhhc----CchhhccEEEEecccc
Confidence 4788999999888777543 333455679999999 22221 2478899999999993
No 123
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.26 E-value=6.1e-11 Score=125.84 Aligned_cols=89 Identities=21% Similarity=0.209 Sum_probs=71.8
Q ss_pred CCCCccHhhHHHHHHhhCCCCCCCCEEEECCCCCchHHHhHHHHHHHhhhcccCCceEEEEcccHHHHHHHHH----HHH
Q 017196 47 GISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKD----VFA 122 (375)
Q Consensus 47 g~~~~~~~Q~~~~~~~~~~~~~~~~~ii~a~TGsGKTl~~~l~il~~l~~~~~~~~~~lil~Pt~~L~~Q~~~----~~~ 122 (375)
|| ++++-|.+....+...+.+++.+++.||||+|||++|++|++...... +.+++|-++|+.|.+|+.. .++
T Consensus 255 ~~-e~R~~Q~~m~~~v~~~l~~~~~~~iEA~TGtGKTlaYLlpa~~~a~~~---~~~vvIsT~T~~LQ~Ql~~kDiP~L~ 330 (928)
T PRK08074 255 KY-EKREGQQEMMKEVYTALRDSEHALIEAGTGTGKSLAYLLPAAYFAKKK---EEPVVISTYTIQLQQQLLEKDIPLLQ 330 (928)
T ss_pred CC-cCCHHHHHHHHHHHHHHhcCCCEEEECCCCCchhHHHHHHHHHHhhcc---CCeEEEEcCCHHHHHHHHHhhHHHHH
Confidence 55 899999998888877777889999999999999999999998766543 2379999999999999876 344
Q ss_pred HhccccCceEEEeecCCc
Q 017196 123 AIAPAVGLSVGLAVGQSS 140 (375)
Q Consensus 123 ~~~~~~~~~v~~~~~~~~ 140 (375)
++.+ .++++..+.|...
T Consensus 331 ~~~~-~~~~~~~lKGr~n 347 (928)
T PRK08074 331 KIFP-FPVEAALLKGRSH 347 (928)
T ss_pred HHcC-CCceEEEEEcccc
Confidence 4443 2577888887654
No 124
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=99.24 E-value=6.3e-10 Score=111.39 Aligned_cols=130 Identities=22% Similarity=0.268 Sum_probs=100.0
Q ss_pred CCCCCccHhhHHHHHHhhCCCCCCCCEEEECCCCCchHHHhHHHHHHHhhhcccCCceEEEEcccHHHHHHHHHHHHHhc
Q 017196 46 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIA 125 (375)
Q Consensus 46 ~g~~~~~~~Q~~~~~~~~~~~~~~~~~ii~a~TGsGKTl~~~l~il~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~ 125 (375)
+|. .|++.|..+.-.+. .|+ +..+.||.|||+++++|++.....+. .+-+++|+-.||.|-+..+..+.
T Consensus 75 lg~-r~ydvQlig~l~Ll----~G~--VaEM~TGEGKTLvA~l~a~l~AL~G~----~VhvvT~NdyLA~RDae~m~~ly 143 (764)
T PRK12326 75 LGL-RPFDVQLLGALRLL----AGD--VIEMATGEGKTLAGAIAAAGYALQGR----RVHVITVNDYLARRDAEWMGPLY 143 (764)
T ss_pred cCC-CcchHHHHHHHHHh----CCC--cccccCCCCHHHHHHHHHHHHHHcCC----CeEEEcCCHHHHHHHHHHHHHHH
Confidence 575 99999999864443 443 77999999999999999988776652 59999999999999999999999
Q ss_pred cccCceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcCCCcEEEeCcHHH-HHHHhhcC-----CCCCCCcc
Q 017196 126 PAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRL-MDHINATR-----GFTLEHLC 199 (375)
Q Consensus 126 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiV~Tp~~l-~~~l~~~~-----~~~~~~~~ 199 (375)
...|+++..+.++.+..... . .-.|||+-||..-+ .++++..- ....+.+.
T Consensus 144 ~~LGLsvg~i~~~~~~~err----------------------~-aY~~DItYgTn~e~gFDyLRDnm~~~~~~~v~R~~~ 200 (764)
T PRK12326 144 EALGLTVGWITEESTPEERR----------------------A-AYACDVTYASVNEIGFDVLRDQLVTDVADLVSPNPD 200 (764)
T ss_pred HhcCCEEEEECCCCCHHHHH----------------------H-HHcCCCEEcCCcccccccchhhhccChHhhcCCccc
Confidence 99999999998876544331 1 22579999997654 33443311 12356788
Q ss_pred EEEEecchhh
Q 017196 200 YLVVDETDRL 209 (375)
Q Consensus 200 ~vIiDE~h~l 209 (375)
+.||||+|.+
T Consensus 201 faIVDEvDSi 210 (764)
T PRK12326 201 VAIIDEADSV 210 (764)
T ss_pred eeeecchhhh
Confidence 9999999998
No 125
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=99.23 E-value=4.2e-10 Score=107.39 Aligned_cols=71 Identities=23% Similarity=0.222 Sum_probs=57.5
Q ss_pred CccHhhHHHHHHhhCCCCCC-CCEEEECCCCCchHHHhHHHHHHHhhhcccCCceEEEEcccHHHHHHHHHHHHHhccc
Q 017196 50 SLFPVQVAVWQETIGPGLFE-RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPA 127 (375)
Q Consensus 50 ~~~~~Q~~~~~~~~~~~~~~-~~~ii~a~TGsGKTl~~~l~il~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~ 127 (375)
.|..-|-.|+..+...+.+| +.-.+-+.||||||.+.+ -++..+.+ .+||++|++.||-|+|..+++|++.
T Consensus 12 ~PaGDQP~AI~~Lv~gi~~g~~~QtLLGvTGSGKTfT~A-nVI~~~~r------PtLV~AhNKTLAaQLy~Efk~fFP~ 83 (663)
T COG0556 12 KPAGDQPEAIAELVEGIENGLKHQTLLGVTGSGKTFTMA-NVIAKVQR------PTLVLAHNKTLAAQLYSEFKEFFPE 83 (663)
T ss_pred CCCCCcHHHHHHHHHHHhcCceeeEEeeeccCCchhHHH-HHHHHhCC------CeEEEecchhHHHHHHHHHHHhCcC
Confidence 78888999999988877777 467888999999998743 23333322 3999999999999999999999986
No 126
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=99.21 E-value=5.3e-10 Score=109.43 Aligned_cols=234 Identities=19% Similarity=0.214 Sum_probs=132.6
Q ss_pred hhCCCCCCCCEEEECCCCCchHHHhHHHHHHHhhhcc-cCCceEEEEcccHHHHHHHHHHHH-HhccccCceEEEeecCC
Q 017196 62 TIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRA-VRCLRALVVLPTRDLALQVKDVFA-AIAPAVGLSVGLAVGQS 139 (375)
Q Consensus 62 ~~~~~~~~~~~ii~a~TGsGKTl~~~l~il~~l~~~~-~~~~~~lil~Pt~~L~~Q~~~~~~-~~~~~~~~~v~~~~~~~ 139 (375)
++..+.+++-++|.++||||||.. +|= .+.+.. ....++-+.-|.|--|..+.++.. +.....|-.|+.-.-=.
T Consensus 59 il~~ve~nqvlIviGeTGsGKSTQ--ipQ--yL~eaG~~~~g~I~~TQPRRVAavslA~RVAeE~~~~lG~~VGY~IRFe 134 (674)
T KOG0922|consen 59 ILYAVEDNQVLIVIGETGSGKSTQ--IPQ--YLAEAGFASSGKIACTQPRRVAAVSLAKRVAEEMGCQLGEEVGYTIRFE 134 (674)
T ss_pred HHHHHHHCCEEEEEcCCCCCcccc--HhH--HHHhcccccCCcEEeecCchHHHHHHHHHHHHHhCCCcCceeeeEEEec
Confidence 444555788899999999999974 332 222211 122235555677766665555443 44333343333221110
Q ss_pred chHHHHHHHhhcCccccCccCCchhHHHhhcCCCcEEEeCcHHHHHHHhhcCCCCCCCccEEEEecchhhhhHhH-HhHH
Q 017196 140 SIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAY-QAWL 218 (375)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiV~Tp~~l~~~l~~~~~~~~~~~~~vIiDE~h~l~~~~~-~~~l 218 (375)
+ .......|...|.+.|++-+..+. .++.+++||+||||. ... ...+
T Consensus 135 d---------------------------~ts~~TrikymTDG~LLRE~l~Dp--~LskYsvIIlDEAHE---Rsl~TDiL 182 (674)
T KOG0922|consen 135 D---------------------------STSKDTRIKYMTDGMLLREILKDP--LLSKYSVIILDEAHE---RSLHTDIL 182 (674)
T ss_pred c---------------------------cCCCceeEEEecchHHHHHHhcCC--ccccccEEEEechhh---hhhHHHHH
Confidence 0 011234899999999988776633 578999999999993 332 2223
Q ss_pred HHHHHhhhcccccccccccccccccccccccccccccccCCCCCCCCceeEEEEEEecCCCchhhhccccCCCeEEecCC
Q 017196 219 PTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGE 298 (375)
Q Consensus 219 ~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~~~~~~~~~~~~~~~i~~~~ 298 (375)
..++..+-..+. .+++|+||||+. ...+...|..-++....+.
T Consensus 183 lGlLKki~~~R~-----------------------------------~LklIimSATld--a~kfS~yF~~a~i~~i~GR 225 (674)
T KOG0922|consen 183 LGLLKKILKKRP-----------------------------------DLKLIIMSATLD--AEKFSEYFNNAPILTIPGR 225 (674)
T ss_pred HHHHHHHHhcCC-----------------------------------CceEEEEeeeec--HHHHHHHhcCCceEeecCC
Confidence 333333222111 467999999994 4555544444344443333
Q ss_pred ccccCcccceeEEEeccC-CCcHHHHHH---HHHhcCCCeEEEEcCChhhHHHHHHHHHHhc-----CCcceEEeccccc
Q 017196 299 TRYKLPERLESYKLICES-KLKPLYLVA---LLQSLGEEKCIVFTSSVESTHRLCTLLNHFG-----ELRIKIKEYSGLQ 369 (375)
Q Consensus 299 ~~~~~~~~i~~~~~~~~~-~~k~~~l~~---ll~~~~~~k~lIF~~s~~~a~~l~~~L~~~g-----~~~~~~~~lh~~~ 369 (375)
.- .++-.|...+. +...+.+.. +-...+.+-+|||....++.+.+++.|.+.. +....+..+||.|
T Consensus 226 ~f-----PVei~y~~~p~~dYv~a~~~tv~~Ih~~E~~GDILvFLtGqeEIe~~~~~l~e~~~~~~~~~~~~~lply~aL 300 (674)
T KOG0922|consen 226 TF-----PVEILYLKEPTADYVDAALITVIQIHLTEPPGDILVFLTGQEEIEAACELLRERAKSLPEDCPELILPLYGAL 300 (674)
T ss_pred CC-----ceeEEeccCCchhhHHHHHHHHHHHHccCCCCCEEEEeCCHHHHHHHHHHHHHHhhhccccCcceeeeecccC
Confidence 21 23333322221 122222222 2223466789999999999999999997652 1111357899999
Q ss_pred cccc
Q 017196 370 RQSV 373 (375)
Q Consensus 370 ~~~~ 373 (375)
|.++
T Consensus 301 ~~e~ 304 (674)
T KOG0922|consen 301 PSEE 304 (674)
T ss_pred CHHH
Confidence 8765
No 127
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.16 E-value=1.1e-09 Score=108.74 Aligned_cols=227 Identities=18% Similarity=0.216 Sum_probs=129.1
Q ss_pred hCCCCCCCCEEEECCCCCchHHHhHHHHHHHhhhcc-----cCCceEEEEc-ccHHHHHHHHHHHH-HhccccCceEE--
Q 017196 63 IGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRA-----VRCLRALVVL-PTRDLALQVKDVFA-AIAPAVGLSVG-- 133 (375)
Q Consensus 63 ~~~~~~~~~~ii~a~TGsGKTl~~~l~il~~l~~~~-----~~~~~~lil~-Pt~~L~~Q~~~~~~-~~~~~~~~~v~-- 133 (375)
+.++..+--+|||+.||||||.. +|=+ +...+ ...+-.|-|+ |.|--|..+.++.. +++. .+-.|.
T Consensus 265 MEaIn~n~vvIIcGeTGsGKTTQ--vPQF--LYEAGf~s~~~~~~gmIGITqPRRVAaiamAkRVa~EL~~-~~~eVsYq 339 (1172)
T KOG0926|consen 265 MEAINENPVVIICGETGSGKTTQ--VPQF--LYEAGFASEQSSSPGMIGITQPRRVAAIAMAKRVAFELGV-LGSEVSYQ 339 (1172)
T ss_pred HHHhhcCCeEEEecCCCCCcccc--chHH--HHHcccCCccCCCCCeeeecCchHHHHHHHHHHHHHHhcc-CccceeEE
Confidence 45555666789999999999985 3322 22211 1123355555 66655555554443 3333 332332
Q ss_pred EeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcCCCcEEEeCcHHHHHHHhhcCCCCCCCccEEEEecchhhhhHh
Q 017196 134 LAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREA 213 (375)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiV~Tp~~l~~~l~~~~~~~~~~~~~vIiDE~h~l~~~~ 213 (375)
.-+.+. +.....|-++|.+.|+.-+.+ .|.+...+.||+||||.=. -
T Consensus 340 IRfd~t-----------------------------i~e~T~IkFMTDGVLLrEi~~--DflL~kYSvIIlDEAHERS--v 386 (1172)
T KOG0926|consen 340 IRFDGT-----------------------------IGEDTSIKFMTDGVLLREIEN--DFLLTKYSVIILDEAHERS--V 386 (1172)
T ss_pred EEeccc-----------------------------cCCCceeEEecchHHHHHHHH--hHhhhhceeEEechhhhcc--c
Confidence 222221 223458999999999998887 4788999999999999531 1
Q ss_pred HHhHHHHHHHhhhcccccccccccccccccccccccccccccccCCCCCCCCceeEEEEEEecC-CCchhhhccccCCCe
Q 017196 214 YQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLT-QDPNKLAQLDLHHPL 292 (375)
Q Consensus 214 ~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~-~~~~~~~~~~~~~~~ 292 (375)
+...|-.++..+-+.+. +....+.....++.|+||||+. ++..+..+.|-.-|-
T Consensus 387 nTDILiGmLSRiV~LR~-------------------------k~~ke~~~~kpLKLIIMSATLRVsDFtenk~LFpi~pP 441 (1172)
T KOG0926|consen 387 NTDILIGMLSRIVPLRQ-------------------------KYYKEQCQIKPLKLIIMSATLRVSDFTENKRLFPIPPP 441 (1172)
T ss_pred hHHHHHHHHHHHHHHHH-------------------------HHhhhhcccCceeEEEEeeeEEecccccCceecCCCCc
Confidence 22222222222211111 1111123334678999999985 333333444444455
Q ss_pred EEecCCccccCcccceeEEEeccCCCcHHHHHH---HHHhcCCCeEEEEcCChhhHHHHHHHHHHh
Q 017196 293 FLTTGETRYKLPERLESYKLICESKLKPLYLVA---LLQSLGEEKCIVFTSSVESTHRLCTLLNHF 355 (375)
Q Consensus 293 ~i~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~---ll~~~~~~k~lIF~~s~~~a~~l~~~L~~~ 355 (375)
.+.++...+ |-.| |+.-..+.+.-.+.... +-+.++.+-+|||+....+++.+++.|++.
T Consensus 442 likVdARQf--PVsI-HF~krT~~DYi~eAfrKtc~IH~kLP~G~ILVFvTGQqEV~qL~~kLRK~ 504 (1172)
T KOG0926|consen 442 LIKVDARQF--PVSI-HFNKRTPDDYIAEAFRKTCKIHKKLPPGGILVFVTGQQEVDQLCEKLRKR 504 (1172)
T ss_pred eeeeecccC--ceEE-EeccCCCchHHHHHHHHHHHHhhcCCCCcEEEEEeChHHHHHHHHHHHhh
Confidence 777766543 2333 33222222222222222 223557889999999999999999999864
No 128
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=99.15 E-value=9.2e-10 Score=113.48 Aligned_cols=88 Identities=25% Similarity=0.208 Sum_probs=66.8
Q ss_pred CCCCccHhhHHHHHHhhCCCCC-----CCCEEEECCCCCchHHHhHHHHHHHhhhcccCCceEEEEcccHHHHHHHHH-H
Q 017196 47 GISSLFPVQVAVWQETIGPGLF-----ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKD-V 120 (375)
Q Consensus 47 g~~~~~~~Q~~~~~~~~~~~~~-----~~~~ii~a~TGsGKTl~~~l~il~~l~~~~~~~~~~lil~Pt~~L~~Q~~~-~ 120 (375)
|| ++++-|.+....+...+.. ++.++|.||||+|||++|++|++....... .++||-+.|+.|-+|+.. .
T Consensus 23 ~~-e~R~~Q~~M~~~V~~al~~~~~~~~~~lviEAgTGtGKTlaYLlPai~~A~~~~---k~vVIST~T~~LQeQL~~kD 98 (697)
T PRK11747 23 GF-IPRAGQRQMIAEVAKTLAGEYLKDGRILVIEAGTGVGKTLSYLLAGIPIARAEK---KKLVISTATVALQEQLVSKD 98 (697)
T ss_pred CC-CcCHHHHHHHHHHHHHHhcccccccceEEEECCCCcchhHHHHHHHHHHHHHcC---CeEEEEcCCHHHHHHHHhhh
Confidence 56 8999999988777776666 367889999999999999999987666432 369999999999999864 2
Q ss_pred H---HHhccccCceEEEeecCC
Q 017196 121 F---AAIAPAVGLSVGLAVGQS 139 (375)
Q Consensus 121 ~---~~~~~~~~~~v~~~~~~~ 139 (375)
+ +++.+ .++++..+-|..
T Consensus 99 lP~l~~~l~-~~~~~~llKGr~ 119 (697)
T PRK11747 99 LPLLLKISG-LDFKFTLAKGRG 119 (697)
T ss_pred hhHHHHHcC-CCceEEEEcCcc
Confidence 3 33322 256666666653
No 129
>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification]
Probab=99.13 E-value=1.4e-09 Score=111.73 Aligned_cols=247 Identities=20% Similarity=0.223 Sum_probs=148.0
Q ss_pred ccHhhHHHHHHhhCCCCCCCCEEEECCCCCchHHHhHHHHHHHhhhcccCCceEEEEcccHHHHHHHHHHHH-HhccccC
Q 017196 51 LFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFA-AIAPAVG 129 (375)
Q Consensus 51 ~~~~Q~~~~~~~~~~~~~~~~~ii~a~TGsGKTl~~~l~il~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~~~-~~~~~~~ 129 (375)
-+..+... ++.+.+.+.++|.+.||+|||...---+++....++ +..++++--|.|=-|..+.+.+. +.++..|
T Consensus 174 a~~~r~~I----l~~i~~~qVvvIsGeTGcGKTTQvpQfiLd~~~~~~-~~~~IicTQPRRIsAIsvAeRVa~ER~~~~g 248 (924)
T KOG0920|consen 174 AYKMRDTI----LDAIEENQVVVISGETGCGKTTQVPQFILDEAIESG-AACNIICTQPRRISAISVAERVAKERGESLG 248 (924)
T ss_pred cHHHHHHH----HHHHHhCceEEEeCCCCCCchhhhhHHHHHHHHhcC-CCCeEEecCCchHHHHHHHHHHHHHhccccC
Confidence 35555554 444447888999999999999875445566555544 44566666688766666666554 3444445
Q ss_pred ceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcCCCcEEEeCcHHHHHHHhhcCCCCCCCccEEEEecchhh
Q 017196 130 LSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRL 209 (375)
Q Consensus 130 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiV~Tp~~l~~~l~~~~~~~~~~~~~vIiDE~h~l 209 (375)
-.|+.-.+..+ .......+++||.+.|++.+.. .-.+..+..+|+||+|.=
T Consensus 249 ~~VGYqvrl~~---------------------------~~s~~t~L~fcTtGvLLr~L~~--~~~l~~vthiivDEVHER 299 (924)
T KOG0920|consen 249 EEVGYQVRLES---------------------------KRSRETRLLFCTTGVLLRRLQS--DPTLSGVTHIIVDEVHER 299 (924)
T ss_pred CeeeEEEeeec---------------------------ccCCceeEEEecHHHHHHHhcc--CcccccCceeeeeeEEEc
Confidence 44443333221 1223368999999999998877 345778999999999954
Q ss_pred hhH-hHHhHHHHHHHhhhcccccccccccccccccccccccccccccccCCCCCCCCceeEEEEEEecCCCchhhhcccc
Q 017196 210 LRE-AYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDL 288 (375)
Q Consensus 210 ~~~-~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~~~~~~~~~~ 288 (375)
.-. +| +..++..+-... +.+++|+||||+. .+.+...|.
T Consensus 300 ~i~~Df---lLi~lk~lL~~~-----------------------------------p~LkvILMSAT~d--ae~fs~YF~ 339 (924)
T KOG0920|consen 300 SINTDF---LLILLKDLLPRN-----------------------------------PDLKVILMSATLD--AELFSDYFG 339 (924)
T ss_pred cCCccc---HHHHHHHHhhhC-----------------------------------CCceEEEeeeecc--hHHHHHHhC
Confidence 222 22 333333322211 2789999999995 445544454
Q ss_pred CCCeEEecCCcc---------------ccCcccceeE------------EEeccCCCcHHHHHHHHHhc----CCCeEEE
Q 017196 289 HHPLFLTTGETR---------------YKLPERLESY------------KLICESKLKPLYLVALLQSL----GEEKCIV 337 (375)
Q Consensus 289 ~~~~~i~~~~~~---------------~~~~~~i~~~------------~~~~~~~~k~~~l~~ll~~~----~~~k~lI 337 (375)
.-|+....+..- +...+ ..++ ......+...+.+.+++.-. ..+.+||
T Consensus 340 ~~pvi~i~grtfpV~~~fLEDil~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~id~~Li~~li~~I~~~~~~GaILV 418 (924)
T KOG0920|consen 340 GCPVITIPGRTFPVKEYFLEDILSKTGYVSED-DSARSGPERSQLRLARLKLWEPEIDYDLIEDLIEYIDEREFEGAILV 418 (924)
T ss_pred CCceEeecCCCcchHHHHHHHHHHHhcccccc-cccccccccCccccccchhccccccHHHHHHHHHhcccCCCCceEEE
Confidence 444443322110 00000 0000 00001123345555555422 3568999
Q ss_pred EcCChhhHHHHHHHHHHhc----CCcceEEecccccccc
Q 017196 338 FTSSVESTHRLCTLLNHFG----ELRIKIKEYSGLQRQS 372 (375)
Q Consensus 338 F~~s~~~a~~l~~~L~~~g----~~~~~~~~lh~~~~~~ 372 (375)
|.+...+...+++.|.... ...+.+..+|+.|+..
T Consensus 419 FLPG~~eI~~~~~~L~~~~~f~~~~~~~ilplHs~~~s~ 457 (924)
T KOG0920|consen 419 FLPGWEEILQLKELLEVNLPFADSLKFAILPLHSSIPSE 457 (924)
T ss_pred EcCCHHHHHHHHHHhhhccccccccceEEEeccccCChH
Confidence 9999999999999997532 1247889999999874
No 130
>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics]
Probab=99.12 E-value=1.5e-10 Score=114.53 Aligned_cols=144 Identities=22% Similarity=0.207 Sum_probs=106.3
Q ss_pred CCCCccHhhHHHHHHhhCCCCCCCCEEEECCCCCchHHHhHHHHHHHhhhcccCCceEEEEcccHHHHHHHHHHHHHhcc
Q 017196 47 GISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAP 126 (375)
Q Consensus 47 g~~~~~~~Q~~~~~~~~~~~~~~~~~ii~a~TGsGKTl~~~l~il~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~ 126 (375)
|+ ++-+||.-.++|+.-.-..+-+.|+...+|.|||.. +++.+..++..+.++ .-|||||+-.| +-|.+++.+|++
T Consensus 397 ~i-~LkdYQlvGvNWL~Llyk~~l~gILADEMGLGKTiQ-vIaFlayLkq~g~~g-pHLVVvPsSTl-eNWlrEf~kwCP 472 (941)
T KOG0389|consen 397 GI-QLKDYQLVGVNWLLLLYKKKLNGILADEMGLGKTIQ-VIAFLAYLKQIGNPG-PHLVVVPSSTL-ENWLREFAKWCP 472 (941)
T ss_pred CC-cccchhhhhHHHHHHHHHccccceehhhccCcchhH-HHHHHHHHHHcCCCC-CcEEEecchhH-HHHHHHHHHhCC
Confidence 44 689999999998875445677889999999999976 577777777765555 48999999776 459999999999
Q ss_pred ccCceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcCCCcEEEeCcHHHHHHHhhcCCCCCCCccEEEEecc
Q 017196 127 AVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDET 206 (375)
Q Consensus 127 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiV~Tp~~l~~~l~~~~~~~~~~~~~vIiDE~ 206 (375)
.++|..++|...-..+.+..++.. ...++|+|+|+.-+..--....-+.-..++++|+||.
T Consensus 473 --sl~Ve~YyGSq~ER~~lR~~i~~~-----------------~~~ydVllTTY~la~~~kdDRsflk~~~~n~viyDEg 533 (941)
T KOG0389|consen 473 --SLKVEPYYGSQDERRELRERIKKN-----------------KDDYDVLLTTYNLAASSKDDRSFLKNQKFNYVIYDEG 533 (941)
T ss_pred --ceEEEeccCcHHHHHHHHHHHhcc-----------------CCCccEEEEEeecccCChHHHHHHHhccccEEEecch
Confidence 689999999986666665544432 3478999999865432111101123456789999999
Q ss_pred hhhhhHh
Q 017196 207 DRLLREA 213 (375)
Q Consensus 207 h~l~~~~ 213 (375)
|++-+..
T Consensus 534 HmLKN~~ 540 (941)
T KOG0389|consen 534 HMLKNRT 540 (941)
T ss_pred hhhhccc
Confidence 9886553
No 131
>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only]
Probab=99.10 E-value=2.8e-10 Score=114.81 Aligned_cols=147 Identities=19% Similarity=0.133 Sum_probs=101.1
Q ss_pred CccHhhHHHHHHhhCCCCCCCCEEEECCCCCchHHHhHHHHHHHhhhcccCCceEEEEcccHHHHHHHHHHHHHhccccC
Q 017196 50 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVG 129 (375)
Q Consensus 50 ~~~~~Q~~~~~~~~~~~~~~~~~ii~a~TGsGKTl~~~l~il~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~ 129 (375)
.|-.||++.+ .....+..++|.|||.+|||.+ -..+++.+.+.... .-+|+++||.+|+.|....+.......-
T Consensus 511 ~Pd~WQ~elL----DsvDr~eSavIVAPTSaGKTfi-sfY~iEKVLResD~-~VVIyvaPtKaLVnQvsa~VyaRF~~~t 584 (1330)
T KOG0949|consen 511 CPDEWQRELL----DSVDRNESAVIVAPTSAGKTFI-SFYAIEKVLRESDS-DVVIYVAPTKALVNQVSANVYARFDTKT 584 (1330)
T ss_pred CCcHHHHHHh----hhhhcccceEEEeeccCCceec-cHHHHHHHHhhcCC-CEEEEecchHHHhhhhhHHHHHhhccCc
Confidence 7889999964 4445778899999999999986 35566666665433 3699999999999999888876542211
Q ss_pred -ceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcCCCcEEEeCcHHHHHHHhhc--CCCCCCCccEEEEecc
Q 017196 130 -LSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINAT--RGFTLEHLCYLVVDET 206 (375)
Q Consensus 130 -~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiV~Tp~~l~~~l~~~--~~~~~~~~~~vIiDE~ 206 (375)
.....+.|.-+ .+++ ....+|+|+|+-|+.+-+++... ..-+..+++++|+||+
T Consensus 585 ~~rg~sl~g~lt--qEYs---------------------inp~nCQVLITvPecleslLlspp~~q~~cerIRyiIfDEV 641 (1330)
T KOG0949|consen 585 FLRGVSLLGDLT--QEYS---------------------INPWNCQVLITVPECLESLLLSPPHHQKFCERIRYIIFDEV 641 (1330)
T ss_pred cccchhhHhhhh--HHhc---------------------CCchhceEEEEchHHHHHHhcCchhhhhhhhcceEEEechh
Confidence 12222222211 1111 12357999999999998888762 2346789999999999
Q ss_pred hhhhhHhHHhHHHHHHHhh
Q 017196 207 DRLLREAYQAWLPTVLQLT 225 (375)
Q Consensus 207 h~l~~~~~~~~l~~i~~~l 225 (375)
|.+.+..-....+.++.++
T Consensus 642 H~iG~~ed~l~~Eqll~li 660 (1330)
T KOG0949|consen 642 HLIGNEEDGLLWEQLLLLI 660 (1330)
T ss_pred hhccccccchHHHHHHHhc
Confidence 9997765444445555444
No 132
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=99.09 E-value=3.3e-09 Score=108.18 Aligned_cols=130 Identities=27% Similarity=0.313 Sum_probs=99.4
Q ss_pred CCCCCccHhhHHHHHHhhCCCCCCCCEEEECCCCCchHHHhHHHHHHHhhhcccCCceEEEEcccHHHHHHHHHHHHHhc
Q 017196 46 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIA 125 (375)
Q Consensus 46 ~g~~~~~~~Q~~~~~~~~~~~~~~~~~ii~a~TGsGKTl~~~l~il~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~ 125 (375)
+|. .|+++|..+- + .-++.-+..+.||-|||+++.+|++.....+. .+-|++++-.||..=...+..+.
T Consensus 82 lG~-r~ydVQliGg---l---~Lh~G~IAEM~TGEGKTL~atlpaylnAL~Gk----gVhVVTvNdYLA~RDae~m~~vy 150 (939)
T PRK12902 82 LGM-RHFDVQLIGG---M---VLHEGQIAEMKTGEGKTLVATLPSYLNALTGK----GVHVVTVNDYLARRDAEWMGQVH 150 (939)
T ss_pred hCC-CcchhHHHhh---h---hhcCCceeeecCCCChhHHHHHHHHHHhhcCC----CeEEEeCCHHHHHhHHHHHHHHH
Confidence 575 8999997752 2 23455699999999999999999988776653 49999999999999888999888
Q ss_pred cccCceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcCCCcEEEeCcHHH-HHHHhh-----cCCCCCCCcc
Q 017196 126 PAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRL-MDHINA-----TRGFTLEHLC 199 (375)
Q Consensus 126 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiV~Tp~~l-~~~l~~-----~~~~~~~~~~ 199 (375)
...|+.|+.+.++...... +..-.|||+.||+..| .++++. ......+.+.
T Consensus 151 ~~LGLtvg~i~~~~~~~er-----------------------r~aY~~DItYgTn~e~gFDYLRDnm~~~~~~~vqR~~~ 207 (939)
T PRK12902 151 RFLGLSVGLIQQDMSPEER-----------------------KKNYACDITYATNSELGFDYLRDNMATDISEVVQRPFN 207 (939)
T ss_pred HHhCCeEEEECCCCChHHH-----------------------HHhcCCCeEEecCCcccccchhhhhcccccccccCccc
Confidence 8889999998776544333 2345789999999766 333332 1223467889
Q ss_pred EEEEecchhh
Q 017196 200 YLVVDETDRL 209 (375)
Q Consensus 200 ~vIiDE~h~l 209 (375)
+.||||+|.+
T Consensus 208 faIVDEvDSI 217 (939)
T PRK12902 208 YCVIDEVDSI 217 (939)
T ss_pred eEEEecccce
Confidence 9999999998
No 133
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=99.08 E-value=4.7e-10 Score=114.84 Aligned_cols=130 Identities=24% Similarity=0.262 Sum_probs=100.1
Q ss_pred CCCCCccHhhHHHHHHhhCCCCCCCCEEEECCCCCchHHHhHHHHHHHhhhcccCCceEEEEcccHHHHHHHHHHHHHhc
Q 017196 46 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIA 125 (375)
Q Consensus 46 ~g~~~~~~~Q~~~~~~~~~~~~~~~~~ii~a~TGsGKTl~~~l~il~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~ 125 (375)
+|. .|+++|...- + .-++.-|..+.||.|||+++++|++.....+. .+-+++||..||.|-+..+..+.
T Consensus 79 lGm-~~ydVQliGg---~---~Lh~G~iaEM~TGEGKTLvA~l~a~l~al~G~----~VhvvT~ndyLA~RD~e~m~~l~ 147 (913)
T PRK13103 79 MGM-RHFDVQLIGG---M---TLHEGKIAEMRTGEGKTLVGTLAVYLNALSGK----GVHVVTVNDYLARRDANWMRPLY 147 (913)
T ss_pred hCC-CcchhHHHhh---h---HhccCccccccCCCCChHHHHHHHHHHHHcCC----CEEEEeCCHHHHHHHHHHHHHHh
Confidence 574 8999997752 2 13445589999999999999999987776652 59999999999999999999999
Q ss_pred cccCceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcCCCcEEEeCcHHH-HHHHhhcCC-----CCCCCcc
Q 017196 126 PAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRL-MDHINATRG-----FTLEHLC 199 (375)
Q Consensus 126 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiV~Tp~~l-~~~l~~~~~-----~~~~~~~ 199 (375)
...|+++.++.++.+...... .-.++|++||..-| .++++..-. .-.+.+.
T Consensus 148 ~~lGl~v~~i~~~~~~~err~-----------------------~Y~~dI~YGT~~e~gFDYLrD~~~~~~~~~vqr~l~ 204 (913)
T PRK13103 148 EFLGLSVGIVTPFQPPEEKRA-----------------------AYAADITYGTNNEFGFDYLRDNMAFSLDDKFQRELN 204 (913)
T ss_pred cccCCEEEEECCCCCHHHHHH-----------------------HhcCCEEEEcccccccchhhccceechhhhcccccc
Confidence 999999999988765444321 12379999998765 455544211 1237889
Q ss_pred EEEEecchhh
Q 017196 200 YLVVDETDRL 209 (375)
Q Consensus 200 ~vIiDE~h~l 209 (375)
++||||+|.+
T Consensus 205 ~aIVDEvDsi 214 (913)
T PRK13103 205 FAVIDEVDSI 214 (913)
T ss_pred eeEechhhhe
Confidence 9999999998
No 134
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=99.07 E-value=4.2e-09 Score=107.52 Aligned_cols=130 Identities=24% Similarity=0.282 Sum_probs=98.1
Q ss_pred CCCCCccHhhHHHHHHhhCCCCCCCCEEEECCCCCchHHHhHHHHHHHhhhcccCCceEEEEcccHHHHHHHHHHHHHhc
Q 017196 46 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIA 125 (375)
Q Consensus 46 ~g~~~~~~~Q~~~~~~~~~~~~~~~~~ii~a~TGsGKTl~~~l~il~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~ 125 (375)
.|. .|++.|..+. + .-.+.-+..+.||.|||+++++|++.....+ ..+-|++++..||.+-...+..+.
T Consensus 73 lG~-r~ydvQlig~---l---~L~~G~IaEm~TGEGKTL~a~l~ayl~aL~G----~~VhVvT~NdyLA~RD~e~m~pvy 141 (870)
T CHL00122 73 LGL-RHFDVQLIGG---L---VLNDGKIAEMKTGEGKTLVATLPAYLNALTG----KGVHIVTVNDYLAKRDQEWMGQIY 141 (870)
T ss_pred hCC-CCCchHhhhh---H---hhcCCccccccCCCCchHHHHHHHHHHHhcC----CceEEEeCCHHHHHHHHHHHHHHH
Confidence 576 7999998763 2 1345579999999999999999997555443 259999999999999999999999
Q ss_pred cccCceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcCCCcEEEeCcHHH-HHHHhhcC-----CCCCCCcc
Q 017196 126 PAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRL-MDHINATR-----GFTLEHLC 199 (375)
Q Consensus 126 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiV~Tp~~l-~~~l~~~~-----~~~~~~~~ 199 (375)
...|+.++.+.++.+..... -.-.++|+-||..-+ .++++..- ..-.+.+.
T Consensus 142 ~~LGLsvg~i~~~~~~~err-----------------------~aY~~DItYgTn~e~gFDyLRDnm~~~~~~~v~r~~~ 198 (870)
T CHL00122 142 RFLGLTVGLIQEGMSSEERK-----------------------KNYLKDITYVTNSELGFDYLRDNMALSLSDVVQRPFN 198 (870)
T ss_pred HHcCCceeeeCCCCChHHHH-----------------------HhcCCCCEecCCccccccchhhccCcChHHhhccccc
Confidence 99999999988776554432 223479999997544 34444321 12256788
Q ss_pred EEEEecchhh
Q 017196 200 YLVVDETDRL 209 (375)
Q Consensus 200 ~vIiDE~h~l 209 (375)
+.||||+|.+
T Consensus 199 faIVDEvDSi 208 (870)
T CHL00122 199 YCIIDEVDSI 208 (870)
T ss_pred eeeeecchhh
Confidence 9999999998
No 135
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.05 E-value=1.3e-09 Score=112.93 Aligned_cols=79 Identities=14% Similarity=0.179 Sum_probs=68.8
Q ss_pred CCCCCccHhhHHHHHHhhCCCCCCCCEEEECCCCCchHHHhHHHHHHHhhhcccCCceEEEEcccHHHHHHHHHHHHHhc
Q 017196 46 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIA 125 (375)
Q Consensus 46 ~g~~~~~~~Q~~~~~~~~~~~~~~~~~ii~a~TGsGKTl~~~l~il~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~ 125 (375)
+.|..++|.|.+....++..+..++++++.||||+|||++.+.+++......+ ...+++|++.|..-..|..+++++..
T Consensus 6 FPy~~~y~~Q~~~m~~v~~~l~~~~~~llEsPTGtGKTlslL~~aL~~~~~~~-~~~kIiy~sRThsQl~q~i~Elk~~~ 84 (705)
T TIGR00604 6 FPYEKIYPEQRSYMRDLKRSLDRGDEAILEMPSGTGKTISLLSLILAYQQEKP-EVRKIIYASRTHSQLEQATEELRKLM 84 (705)
T ss_pred cCCCCCCHHHHHHHHHHHHHhccCCceEEeCCCCCCccHHHHHHHHHHHHhcc-ccccEEEEcccchHHHHHHHHHHhhh
Confidence 45777799999999999999999999999999999999999999998876543 33589999999998889999998853
No 136
>COG4889 Predicted helicase [General function prediction only]
Probab=99.03 E-value=1.3e-09 Score=109.09 Aligned_cols=154 Identities=20% Similarity=0.224 Sum_probs=106.3
Q ss_pred CCCCccHhhHHHHHHhhCCCCCCCCEEEECCCCCchHHHhHHHHHHHhhhcccCCceEEEEcccHHHHHHHHHHHHHhcc
Q 017196 47 GISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAP 126 (375)
Q Consensus 47 g~~~~~~~Q~~~~~~~~~~~~~~~~~ii~a~TGsGKTl~~~l~il~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~ 126 (375)
.=.+|+|||+.|++..+..+..+...=+.+.+|+|||.+. +-+.+.+.. .++|+|+|+++|.-|+.+.|..-..
T Consensus 158 ~~kk~R~hQq~Aid~a~~~F~~n~RGkLIMAcGTGKTfTs-LkisEala~-----~~iL~LvPSIsLLsQTlrew~~~~~ 231 (1518)
T COG4889 158 KPKKPRPHQQTAIDAAKEGFSDNDRGKLIMACGTGKTFTS-LKISEALAA-----ARILFLVPSISLLSQTLREWTAQKE 231 (1518)
T ss_pred CCCCCChhHHHHHHHHHhhcccccCCcEEEecCCCccchH-HHHHHHHhh-----hheEeecchHHHHHHHHHHHhhccC
Confidence 3458999999999999888877766777788999999985 445555544 4799999999999999998875433
Q ss_pred ccCceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhh-----cCCCcEEEeCcHHHHHHHhhcCCCCCCCccEE
Q 017196 127 AVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQEL-----QSAVDILVATPGRLMDHINATRGFTLEHLCYL 201 (375)
Q Consensus 127 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~IiV~Tp~~l~~~l~~~~~~~~~~~~~v 201 (375)
.++....++++...... .+-++-.++....+.....++... ..+.-|+++|++.+...-.. +...+..+++|
T Consensus 232 -l~~~a~aVcSD~kvsrs-~eDik~sdl~~p~sT~~~~il~~~~~~~k~~~~~vvFsTYQSl~~i~eA-Qe~G~~~fDli 308 (1518)
T COG4889 232 -LDFRASAVCSDDKVSRS-AEDIKASDLPIPVSTDLEDILSEMEHRQKANGLTVVFSTYQSLPRIKEA-QEAGLDEFDLI 308 (1518)
T ss_pred -ccceeEEEecCcccccc-ccccccccCCCCCcccHHHHHHHHHHhhccCCcEEEEEcccchHHHHHH-HHcCCCCccEE
Confidence 25666777776543322 111222222233333344444332 23568999999988665544 44668899999
Q ss_pred EEecchhh
Q 017196 202 VVDETDRL 209 (375)
Q Consensus 202 IiDE~h~l 209 (375)
|.||||+-
T Consensus 309 icDEAHRT 316 (1518)
T COG4889 309 ICDEAHRT 316 (1518)
T ss_pred Eecchhcc
Confidence 99999976
No 137
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=99.01 E-value=3.2e-09 Score=109.87 Aligned_cols=177 Identities=20% Similarity=0.157 Sum_probs=107.0
Q ss_pred CCccHhhHHHHHHhhC----CCCCCCCEEEECCCCCchHHHhHHHHHHHhhhcccCCceEEEEcccHHHHHHHHHHHHHh
Q 017196 49 SSLFPVQVAVWQETIG----PGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAI 124 (375)
Q Consensus 49 ~~~~~~Q~~~~~~~~~----~~~~~~~~ii~a~TGsGKTl~~~l~il~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~ 124 (375)
..-+.+|-.|++.+.. ....|-.++=.|.||+|||++=+= |+..+. .+..+.|..|..-.|.|..|+-..+++-
T Consensus 407 ~~rF~WQdkA~d~a~~~r~~~~~~GfF~vNMASTGcGKT~aNAR-ImyaLs-d~~~g~RfsiALGLRTLTLQTGda~r~r 484 (1110)
T TIGR02562 407 HPRFRWQNKAFNLAQKLRQKSPEQGAFGVNMASTGCGKTLANAR-AMYALR-DDKQGARFAIALGLRSLTLQTGHALKTR 484 (1110)
T ss_pred CCCcchHHHHHHHHHHHHhhcccCCeEEEEecCCCcchHHHHHH-HHHHhC-CCCCCceEEEEccccceeccchHHHHHh
Confidence 3567899999877653 222233345558999999997433 233333 3346779999999999999999999987
Q ss_pred ccccCceEEEeecCCchHHHHHHHhhcCcc--ccC----------------ccCC----chhHHHhhcC--------CCc
Q 017196 125 APAVGLSVGLAVGQSSIADEISELIKRPKL--EAG----------------ICYD----PEDVLQELQS--------AVD 174 (375)
Q Consensus 125 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~--~~~----------------~~~~----~~~~~~~~~~--------~~~ 174 (375)
..-.+-....+.|+...........+.... +.| .... ..+....+.. ..+
T Consensus 485 L~L~~ddLAVlIGs~Av~~L~e~~~~~~~~~~~~GSeS~e~l~~e~~~~~~~~~~g~l~~~~l~~~l~~~~k~~rll~ap 564 (1110)
T TIGR02562 485 LNLSDDDLAVLIGGTAVQTLFDLSKEKIEQVDEDGSESAPIFLAEGQDCNLPDWDGPLDTIELLGRLSLDDKEKTLLAAP 564 (1110)
T ss_pred cCCCccceEEEECHHHHHHHHHHHhhhccccccCCCccchhhhcccCcCCeeeccCCccchhhhhhhccChhhhhhhcCC
Confidence 665566778888887766554322221110 000 1111 1111112211 258
Q ss_pred EEEeCcHHHHHHHhhcC--CCCCCC----ccEEEEecchhhhhHhHHhHHHHHHHhhhcc
Q 017196 175 ILVATPGRLMDHINATR--GFTLEH----LCYLVVDETDRLLREAYQAWLPTVLQLTRSD 228 (375)
Q Consensus 175 IiV~Tp~~l~~~l~~~~--~~~~~~----~~~vIiDE~h~l~~~~~~~~l~~i~~~l~~~ 228 (375)
|+|||+++++......+ ...++. =+.|||||+|.+ +......|..++......
T Consensus 565 v~V~TIDQlL~a~~~~r~~~~~l~ll~La~svlVlDEVHaY-D~~~~~~L~rlL~w~~~l 623 (1110)
T TIGR02562 565 VLVCTIDHLIPATESHRGGHHIAPMLRLMSSDLILDEPDDY-EPEDLPALLRLVQLAGLL 623 (1110)
T ss_pred eEEecHHHHHHHhhhcccchhHHHHHHhcCCCEEEECCccC-CHHHHHHHHHHHHHHHHc
Confidence 99999999988773322 222221 247999999977 444345566666655543
No 138
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=99.01 E-value=6.1e-10 Score=114.93 Aligned_cols=144 Identities=17% Similarity=0.167 Sum_probs=99.9
Q ss_pred CCccHhhHHHHHHhhCCCCCCCCEEEECCCCCchHHHhHHHHHHHhhhcc-cCCceEEEEcccHHHHHHHHHHHHHhccc
Q 017196 49 SSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRA-VRCLRALVVLPTRDLALQVKDVFAAIAPA 127 (375)
Q Consensus 49 ~~~~~~Q~~~~~~~~~~~~~~~~~ii~a~TGsGKTl~~~l~il~~l~~~~-~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~ 127 (375)
.+++.||...+++++-...++.++|+...+|.|||..- +..+..+.... ..+ ..||++|.-.+. -|.+.+..++
T Consensus 369 ~~LRdyQLeGlNWl~~~W~~~~n~ILADEmgLgktvqt-i~fl~~l~~~~~~~g-pflvvvplst~~-~W~~ef~~w~-- 443 (1373)
T KOG0384|consen 369 NELRDYQLEGLNWLLYSWYKRNNCILADEMGLGKTVQT-ITFLSYLFHSLQIHG-PFLVVVPLSTIT-AWEREFETWT-- 443 (1373)
T ss_pred chhhhhhcccchhHHHHHHhcccceehhhcCCCcchHH-HHHHHHHHHhhhccC-CeEEEeehhhhH-HHHHHHHHHh--
Confidence 79999999999999888888999999999999999863 44455554432 233 388899976544 5888888877
Q ss_pred cCceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcCCCcEEEeCcHHHHHHHhhcCCCCCCCccEEEEecch
Q 017196 128 VGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETD 207 (375)
Q Consensus 128 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiV~Tp~~l~~~l~~~~~~~~~~~~~vIiDE~h 207 (375)
++++..++|.......++.+.=--+ .. .+ .-..+++++|.+.++.--.. +.--.+.+++|||||
T Consensus 444 -~mn~i~y~g~~~sr~~i~~ye~~~~--------~~--~~--~lkf~~lltTye~~LkDk~~---L~~i~w~~~~vDeah 507 (1373)
T KOG0384|consen 444 -DMNVIVYHGNLESRQLIRQYEFYHS--------SN--TK--KLKFNALLTTYEIVLKDKAE---LSKIPWRYLLVDEAH 507 (1373)
T ss_pred -hhceeeeecchhHHHHHHHHHheec--------CC--cc--ccccceeehhhHHHhccHhh---hccCCcceeeecHHh
Confidence 6899999998877666543210000 00 00 01368999998877543222 233457799999999
Q ss_pred hhhhHh
Q 017196 208 RLLREA 213 (375)
Q Consensus 208 ~l~~~~ 213 (375)
++-+..
T Consensus 508 rLkN~~ 513 (1373)
T KOG0384|consen 508 RLKNDE 513 (1373)
T ss_pred hcCchH
Confidence 996553
No 139
>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair]
Probab=98.96 E-value=2.3e-08 Score=101.22 Aligned_cols=145 Identities=20% Similarity=0.053 Sum_probs=100.8
Q ss_pred CCccHhhHHHHHHhhCCCCCC------CCEEEECCCCCchHHHhHHHHHHHhhhccc---CCceEEEEcccHHHHHHHHH
Q 017196 49 SSLFPVQVAVWQETIGPGLFE------RDLCINSPTGSGKTLSYALPIVQTLSNRAV---RCLRALVVLPTRDLALQVKD 119 (375)
Q Consensus 49 ~~~~~~Q~~~~~~~~~~~~~~------~~~ii~a~TGsGKTl~~~l~il~~l~~~~~---~~~~~lil~Pt~~L~~Q~~~ 119 (375)
..++|||++.+..+.+.+..- ..+|+.-..|+|||+..+.-++..+...+. --.++|||+|. .|+.-|.+
T Consensus 237 ~~LrPHQ~EG~~FL~knl~g~~~~~~~~GCImAd~~GlGKTlq~IsflwtlLrq~P~~~~~~~k~lVV~P~-sLv~nWkk 315 (776)
T KOG0390|consen 237 KILRPHQREGFEFLYKNLAGLIRPKNSGGCIMADEPGLGKTLQCISFIWTLLRQFPQAKPLINKPLVVAPS-SLVNNWKK 315 (776)
T ss_pred hhcCchHHHHHHHHHhhhhcccccCCCCceEeeCCCCcchHHHHHHHHHHHHHhCcCccccccccEEEccH-HHHHHHHH
Confidence 368999999998887655322 346777789999999854444444444422 01579999997 78889999
Q ss_pred HHHHhccccCceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHH--hhcCCCcEEEeCcHHHHHHHhhcCCCCCCC
Q 017196 120 VFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQ--ELQSAVDILVATPGRLMDHINATRGFTLEH 197 (375)
Q Consensus 120 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~IiV~Tp~~l~~~l~~~~~~~~~~ 197 (375)
++.+|.....+....++|.....-. +.+ .+.. .-.....|++-+.+.+.+..+. +....
T Consensus 316 EF~KWl~~~~i~~l~~~~~~~~~w~-----~~~-----------sil~~~~~~~~~~vli~sye~~~~~~~~---il~~~ 376 (776)
T KOG0390|consen 316 EFGKWLGNHRINPLDFYSTKKSSWI-----KLK-----------SILFLGYKQFTTPVLIISYETASDYCRK---ILLIR 376 (776)
T ss_pred HHHHhccccccceeeeecccchhhh-----hhH-----------HHHHhhhhheeEEEEeccHHHHHHHHHH---HhcCC
Confidence 9999988767788888887653000 000 0000 1122357888899988877766 66788
Q ss_pred ccEEEEecchhhhhHh
Q 017196 198 LCYLVVDETDRLLREA 213 (375)
Q Consensus 198 ~~~vIiDE~h~l~~~~ 213 (375)
++++|+||.|.+-+..
T Consensus 377 ~glLVcDEGHrlkN~~ 392 (776)
T KOG0390|consen 377 PGLLVCDEGHRLKNSD 392 (776)
T ss_pred CCeEEECCCCCccchh
Confidence 9999999999885543
No 140
>KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics]
Probab=98.95 E-value=1.1e-07 Score=90.28 Aligned_cols=128 Identities=15% Similarity=0.175 Sum_probs=88.5
Q ss_pred CCCccHhhHHHHHHhhCCCCCCCCEEEECCCCCchHHHhHHHHHHHhhhcccCCceEEEEcccHHHHHHHHHHHHHhccc
Q 017196 48 ISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPA 127 (375)
Q Consensus 48 ~~~~~~~Q~~~~~~~~~~~~~~~~~ii~a~TGsGKTl~~~l~il~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~ 127 (375)
+..+.|+|++.+...+. .|..+++...+|.|||+.++ .+......+ ...+|+||. .+-..|.+.+.+|.+.
T Consensus 196 vs~LlPFQreGv~faL~---RgGR~llADeMGLGKTiQAl-aIA~yyraE----wplliVcPA-svrftWa~al~r~lps 266 (689)
T KOG1000|consen 196 VSRLLPFQREGVIFALE---RGGRILLADEMGLGKTIQAL-AIARYYRAE----WPLLIVCPA-SVRFTWAKALNRFLPS 266 (689)
T ss_pred HHhhCchhhhhHHHHHh---cCCeEEEecccccchHHHHH-HHHHHHhhc----CcEEEEecH-HHhHHHHHHHHHhccc
Confidence 34578999999877775 78889999999999999863 333322222 249999997 4556799999999886
Q ss_pred cCceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcCCCcEEEeCcHHHHHHHhhcCCCCCCCccEEEEecch
Q 017196 128 VGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETD 207 (375)
Q Consensus 128 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiV~Tp~~l~~~l~~~~~~~~~~~~~vIiDE~h 207 (375)
... +..+.++...-. .+.....|.|.+++.+..+-+. +.-..+.+||+||.|
T Consensus 267 ~~p-i~vv~~~~D~~~------------------------~~~t~~~v~ivSye~ls~l~~~---l~~~~~~vvI~DEsH 318 (689)
T KOG1000|consen 267 IHP-IFVVDKSSDPLP------------------------DVCTSNTVAIVSYEQLSLLHDI---LKKEKYRVVIFDESH 318 (689)
T ss_pred ccc-eEEEecccCCcc------------------------ccccCCeEEEEEHHHHHHHHHH---HhcccceEEEEechh
Confidence 533 555555543211 1223457888898877554433 445678899999999
Q ss_pred hhhhH
Q 017196 208 RLLRE 212 (375)
Q Consensus 208 ~l~~~ 212 (375)
++-+.
T Consensus 319 ~Lk~s 323 (689)
T KOG1000|consen 319 MLKDS 323 (689)
T ss_pred hhhcc
Confidence 88443
No 141
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=98.90 E-value=1.1e-08 Score=105.69 Aligned_cols=77 Identities=23% Similarity=0.229 Sum_probs=66.7
Q ss_pred hCCCCCccHhhHHHHHHhhCCCCCCCCEEEECCCCCchHHHhHHHHHHHhhhcccCCceEEEEcccHHHHHHHHHHHHHh
Q 017196 45 NMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAI 124 (375)
Q Consensus 45 ~~g~~~~~~~Q~~~~~~~~~~~~~~~~~ii~a~TGsGKTl~~~l~il~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~ 124 (375)
.+...+|++.|.+....+...+.+++.+++.||||+|||++|++|++....... .+++|.++|+.|-+|+.+....+
T Consensus 10 ~~~~~~~r~~Q~~~~~~v~~a~~~~~~~~iEapTGtGKTl~yL~~al~~~~~~~---~~viist~t~~lq~q~~~~~~~~ 86 (654)
T COG1199 10 AFPGFEPRPEQREMAEAVAEALKGGEGLLIEAPTGTGKTLAYLLPALAYAREEG---KKVIISTRTKALQEQLLEEDLPI 86 (654)
T ss_pred hCCCCCCCHHHHHHHHHHHHHHcCCCcEEEECCCCccHHHHHHHHHHHHHHHcC---CcEEEECCCHHHHHHHHHhhcch
Confidence 344559999999999888877778888999999999999999999998887753 36999999999999999877765
No 142
>KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=98.89 E-value=4.6e-08 Score=95.63 Aligned_cols=234 Identities=17% Similarity=0.153 Sum_probs=134.7
Q ss_pred hhCCCCCCCCEEEECCCCCchHHHhHHHHHHHhhhcc--cCCceEEEEcccHHHHHHHHHHH-HHhccccCceEEEeecC
Q 017196 62 TIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRA--VRCLRALVVLPTRDLALQVKDVF-AAIAPAVGLSVGLAVGQ 138 (375)
Q Consensus 62 ~~~~~~~~~~~ii~a~TGsGKTl~~~l~il~~l~~~~--~~~~~~lil~Pt~~L~~Q~~~~~-~~~~~~~~~~v~~~~~~ 138 (375)
++.++..++-++|.+.||||||.. +|= .+...+ ..+.++=+--|.|--|..+...+ +++....|-.|+.-.--
T Consensus 273 ll~av~e~QVLiI~GeTGSGKTTQ--iPQ--yL~EaGytk~gk~IgcTQPRRVAAmSVAaRVA~EMgvkLG~eVGYsIRF 348 (902)
T KOG0923|consen 273 LLKAVKEHQVLIIVGETGSGKTTQ--IPQ--YLYEAGYTKGGKKIGCTQPRRVAAMSVAARVAEEMGVKLGHEVGYSIRF 348 (902)
T ss_pred HHHHHHhCcEEEEEcCCCCCcccc--ccH--HHHhcccccCCceEeecCcchHHHHHHHHHHHHHhCcccccccceEEEe
Confidence 345555788899999999999984 443 233322 12223444457777666655443 34444333222211000
Q ss_pred CchHHHHHHHhhcCccccCccCCchhHHHhhcCCCcEEEeCcHHHHHHHhhcCCCCCCCccEEEEecchhhhhHhHH-hH
Q 017196 139 SSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQ-AW 217 (375)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiV~Tp~~l~~~l~~~~~~~~~~~~~vIiDE~h~l~~~~~~-~~ 217 (375)
.+ -.....-|=..|.+.|+.-+.. ..++...+++||||||.= ... ..
T Consensus 349 Ed---------------------------cTSekTvlKYMTDGmLlREfL~--epdLasYSViiiDEAHER---TL~TDI 396 (902)
T KOG0923|consen 349 ED---------------------------CTSEKTVLKYMTDGMLLREFLS--EPDLASYSVIIVDEAHER---TLHTDI 396 (902)
T ss_pred cc---------------------------ccCcceeeeeecchhHHHHHhc--cccccceeEEEeehhhhh---hhhhhH
Confidence 00 0112335677899999876655 367889999999999943 221 22
Q ss_pred HHHHHHhhhcccccccccccccccccccccccccccccccCCCCCCCCceeEEEEEEecCCCchhhhccccCCCeEEecC
Q 017196 218 LPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTG 297 (375)
Q Consensus 218 l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~~~~~~~~~~~~~~~i~~~ 297 (375)
|-.++..+...+ +.+++++.|||+ +.+++...|-.-|++...+
T Consensus 397 LfgLvKDIar~R-----------------------------------pdLKllIsSAT~--DAekFS~fFDdapIF~iPG 439 (902)
T KOG0923|consen 397 LFGLVKDIARFR-----------------------------------PDLKLLISSATM--DAEKFSAFFDDAPIFRIPG 439 (902)
T ss_pred HHHHHHHHHhhC-----------------------------------CcceEEeecccc--CHHHHHHhccCCcEEeccC
Confidence 222222222211 267899999998 4566655554445554433
Q ss_pred CccccCcccceeEEEeccCCCcHHHHHHHHHh----cCCCeEEEEcCChhhHHHHHHHHHH----hc--CCcceEEeccc
Q 017196 298 ETRYKLPERLESYKLICESKLKPLYLVALLQS----LGEEKCIVFTSSVESTHRLCTLLNH----FG--ELRIKIKEYSG 367 (375)
Q Consensus 298 ~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~----~~~~k~lIF~~s~~~a~~l~~~L~~----~g--~~~~~~~~lh~ 367 (375)
... .+.-+|...++.+=++....-+.+ .+.+-+|||..-.++.+...+.|+. .| ...+-+..+|+
T Consensus 440 RRy-----PVdi~Yt~~PEAdYldAai~tVlqIH~tqp~GDILVFltGQeEIEt~~e~l~~~~~~LGski~eliv~PiYa 514 (902)
T KOG0923|consen 440 RRY-----PVDIFYTKAPEADYLDAAIVTVLQIHLTQPLGDILVFLTGQEEIETVKENLKERCRRLGSKIRELIVLPIYA 514 (902)
T ss_pred ccc-----ceeeecccCCchhHHHHHHhhheeeEeccCCccEEEEeccHHHHHHHHHHHHHHHHHhccccceEEEeeccc
Confidence 322 344455555544443333333322 2567899999988887777776654 34 34567888899
Q ss_pred cccccc
Q 017196 368 LQRQSV 373 (375)
Q Consensus 368 ~~~~~~ 373 (375)
.+|...
T Consensus 515 NLPsel 520 (902)
T KOG0923|consen 515 NLPSEL 520 (902)
T ss_pred cCChHH
Confidence 998653
No 143
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=98.88 E-value=2.8e-07 Score=94.14 Aligned_cols=71 Identities=21% Similarity=0.192 Sum_probs=56.7
Q ss_pred CccHhhHHHHHHhhCCCCCCC-CEEEECCCCCchHHHhHHHHHHHhhhcccCCceEEEEcccHHHHHHHHHHHHHhccc
Q 017196 50 SLFPVQVAVWQETIGPGLFER-DLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPA 127 (375)
Q Consensus 50 ~~~~~Q~~~~~~~~~~~~~~~-~~ii~a~TGsGKTl~~~l~il~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~ 127 (375)
.|+..|-.++..+...+..|. ..++.+.||||||+..+- ++..+ + ..+|||+|+..+|.|+++.++.+++.
T Consensus 9 ~~~~~Q~~ai~~l~~~~~~~~~~~~l~Gvtgs~kt~~~a~-~~~~~-----~-~p~Lvi~~n~~~A~ql~~el~~f~p~ 80 (655)
T TIGR00631 9 QPAGDQPKAIAKLVEGLTDGEKHQTLLGVTGSGKTFTMAN-VIAQV-----N-RPTLVIAHNKTLAAQLYNEFKEFFPE 80 (655)
T ss_pred CCChHHHHHHHHHHHhhhcCCCcEEEECCCCcHHHHHHHH-HHHHh-----C-CCEEEEECCHHHHHHHHHHHHHhCCC
Confidence 789999999999988876663 667999999999986432 22222 1 14999999999999999999999864
No 144
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=98.85 E-value=2.1e-08 Score=103.51 Aligned_cols=127 Identities=23% Similarity=0.254 Sum_probs=92.3
Q ss_pred CccHhhHHHHHHhhCCCCCCCCEEEECCCCCchHHHhHHHHHHHhhhcccCCceEEEEcccHHHHHHHHHHHHHhccccC
Q 017196 50 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVG 129 (375)
Q Consensus 50 ~~~~~Q~~~~~~~~~~~~~~~~~ii~a~TGsGKTl~~~l~il~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~ 129 (375)
.|+++|... .+.-++.-|..+.||-|||+++.+|++.....+. .+=+++.+-.||..=...+..+....|
T Consensus 138 ~~ydVQLiG------givLh~G~IAEM~TGEGKTLvatlp~yLnAL~G~----gVHvVTvNDYLA~RDaewm~p~y~flG 207 (1025)
T PRK12900 138 VPYDVQLIG------GIVLHSGKISEMATGEGKTLVSTLPTFLNALTGR----GVHVVTVNDYLAQRDKEWMNPVFEFHG 207 (1025)
T ss_pred cccchHHhh------hHHhhcCCccccCCCCCcchHhHHHHHHHHHcCC----CcEEEeechHhhhhhHHHHHHHHHHhC
Confidence 688888665 2223445588999999999999999988777763 377888888999877777777777889
Q ss_pred ceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcCCCcEEEeCcHHH-HHHHhhcCC-----CCCCCccEEEE
Q 017196 130 LSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRL-MDHINATRG-----FTLEHLCYLVV 203 (375)
Q Consensus 130 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiV~Tp~~l-~~~l~~~~~-----~~~~~~~~vIi 203 (375)
+.|.++..+...... +..-.|||+-||..-| .++++..-. .-.+.+.+.||
T Consensus 208 LtVg~i~~~~~~~~R-----------------------r~aY~~DItYgTn~EfGFDYLRDnma~~~~~~vqR~~~faIV 264 (1025)
T PRK12900 208 LSVGVILNTMRPEER-----------------------REQYLCDITYGTNNEFGFDYLRDNMAGTPEEMVQRDFYFAIV 264 (1025)
T ss_pred CeeeeeCCCCCHHHH-----------------------HHhCCCcceecCCCccccccchhccccchhhhhccCCceEEE
Confidence 999998665443332 2345689999997544 444443211 22477889999
Q ss_pred ecchhh
Q 017196 204 DETDRL 209 (375)
Q Consensus 204 DE~h~l 209 (375)
||+|.+
T Consensus 265 DEvDSv 270 (1025)
T PRK12900 265 DEVDSV 270 (1025)
T ss_pred echhhh
Confidence 999998
No 145
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=98.84 E-value=2.5e-07 Score=93.84 Aligned_cols=222 Identities=18% Similarity=0.209 Sum_probs=128.5
Q ss_pred EEEECCCCCchHHHhHHHHHHHhhhcccCCceEEEEcccHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHHhhc
Q 017196 72 LCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKR 151 (375)
Q Consensus 72 ~ii~a~TGsGKTl~~~l~il~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 151 (375)
.+|.||+|||||.+..-++-..+. .+..++++++..++|+.++...++...-. |+ ..+......
T Consensus 52 ~vVRSpMGTGKTtaLi~wLk~~l~---~~~~~VLvVShRrSL~~sL~~rf~~~~l~-gF--v~Y~d~~~~---------- 115 (824)
T PF02399_consen 52 LVVRSPMGTGKTTALIRWLKDALK---NPDKSVLVVSHRRSLTKSLAERFKKAGLS-GF--VNYLDSDDY---------- 115 (824)
T ss_pred EEEECCCCCCcHHHHHHHHHHhcc---CCCCeEEEEEhHHHHHHHHHHHHhhcCCC-cc--eeeeccccc----------
Confidence 577899999999875443333332 23347999999999999999999854211 11 111111100
Q ss_pred CccccCccCCchhHHHhhc-CCCcEEEeCcHHHHHHHhhcCCCCCCCccEEEEecchhhhhHhHH-------hHHHHHHH
Q 017196 152 PKLEAGICYDPEDVLQELQ-SAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQ-------AWLPTVLQ 223 (375)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~-~~~~IiV~Tp~~l~~~l~~~~~~~~~~~~~vIiDE~h~l~~~~~~-------~~l~~i~~ 223 (375)
.+. +.++-++...+.|.... .-.+.++++||+||+...++.-|. ..+..+..
T Consensus 116 ----------------~i~~~~~~rLivqIdSL~R~~----~~~l~~yDvVIIDEv~svL~qL~S~Tm~~~~~v~~~L~~ 175 (824)
T PF02399_consen 116 ----------------IIDGRPYDRLIVQIDSLHRLD----GSLLDRYDVVIIDEVMSVLNQLFSPTMRQREEVDNLLKE 175 (824)
T ss_pred ----------------cccccccCeEEEEehhhhhcc----cccccccCEEEEehHHHHHHHHhHHHHhhHHHHHHHHHH
Confidence 111 23466777766665442 224567899999999988776443 22233333
Q ss_pred hhhcccccccccccccccccccccccccccccccCCCCCCCCceeEEEEEEecCCCchhhhccccC-CCeEEecCCcccc
Q 017196 224 LTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLH-HPLFLTTGETRYK 302 (375)
Q Consensus 224 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~~~~~~~~~~~-~~~~i~~~~~~~~ 302 (375)
.+... ..+|++-|++....-++....-. ....+.... +.
T Consensus 176 lI~~a--------------------------------------k~VI~~DA~ln~~tvdFl~~~Rp~~~i~vI~n~--y~ 215 (824)
T PF02399_consen 176 LIRNA--------------------------------------KTVIVMDADLNDQTVDFLASCRPDENIHVIVNT--YA 215 (824)
T ss_pred HHHhC--------------------------------------CeEEEecCCCCHHHHHHHHHhCCCCcEEEEEee--ee
Confidence 44332 24899999998777676665432 222222111 00
Q ss_pred CcccceeEEEe------------------------------------ccCCCcHHHHHHHHHhc-CCCeEEEEcCChhhH
Q 017196 303 LPERLESYKLI------------------------------------CESKLKPLYLVALLQSL-GEEKCIVFTSSVEST 345 (375)
Q Consensus 303 ~~~~i~~~~~~------------------------------------~~~~~k~~~l~~ll~~~-~~~k~lIF~~s~~~a 345 (375)
-+...+..... ....+.......++.+. .++++-||++|...+
T Consensus 216 ~~~fs~R~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tF~~~L~~~L~~gknIcvfsSt~~~~ 295 (824)
T PF02399_consen 216 SPGFSNRRCTFLRSLGTDTLAAALNPEDENADTSPTPKHSPDPTATAAISNDETTFFSELLARLNAGKNICVFSSTVSFA 295 (824)
T ss_pred cCCcccceEEEecccCcHHHHHHhCCcccccccCCCcCCCCccccccccccchhhHHHHHHHHHhCCCcEEEEeChHHHH
Confidence 00000000000 00112334555555555 466788999999999
Q ss_pred HHHHHHHHHhcCCcceEEecccccccc
Q 017196 346 HRLCTLLNHFGELRIKIKEYSGLQRQS 372 (375)
Q Consensus 346 ~~l~~~L~~~g~~~~~~~~lh~~~~~~ 372 (375)
+.++++....+ ..+..++|+-+..
T Consensus 296 ~~v~~~~~~~~---~~Vl~l~s~~~~~ 319 (824)
T PF02399_consen 296 EIVARFCARFT---KKVLVLNSTDKLE 319 (824)
T ss_pred HHHHHHHHhcC---CeEEEEcCCCCcc
Confidence 99999988553 6787887765543
No 146
>PRK14873 primosome assembly protein PriA; Provisional
Probab=98.82 E-value=5.4e-08 Score=99.15 Aligned_cols=104 Identities=17% Similarity=0.146 Sum_probs=77.5
Q ss_pred EEECCCCCchHHHhHHHHHHHhhhcccCCceEEEEcccHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHHhhcC
Q 017196 73 CINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRP 152 (375)
Q Consensus 73 ii~a~TGsGKTl~~~l~il~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 152 (375)
+..+.+|||||..|+-.+-..+..+ ..+|+++|.+.|+.|+...+++.++ +-.+..++++.+..+....|.
T Consensus 164 i~~~~~GSGKTevyl~~i~~~l~~G----k~vLvLvPEi~lt~q~~~rl~~~f~--~~~v~~lhS~l~~~~R~~~w~--- 234 (665)
T PRK14873 164 VWQALPGEDWARRLAAAAAATLRAG----RGALVVVPDQRDVDRLEAALRALLG--AGDVAVLSAGLGPADRYRRWL--- 234 (665)
T ss_pred HhhcCCCCcHHHHHHHHHHHHHHcC----CeEEEEecchhhHHHHHHHHHHHcC--CCcEEEECCCCCHHHHHHHHH---
Confidence 3444469999999977665555543 3699999999999999999997764 256888999988877765432
Q ss_pred ccccCccCCchhHHHhhcCCCcEEEeCcHHHHHHHhhcCCCCCCCccEEEEecch
Q 017196 153 KLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETD 207 (375)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~IiV~Tp~~l~~~l~~~~~~~~~~~~~vIiDE~h 207 (375)
+...+...|+|||-.- -..-+.++.+|||||=|
T Consensus 235 --------------~~~~G~~~IViGtRSA--------vFaP~~~LgLIIvdEEh 267 (665)
T PRK14873 235 --------------AVLRGQARVVVGTRSA--------VFAPVEDLGLVAIWDDG 267 (665)
T ss_pred --------------HHhCCCCcEEEEccee--------EEeccCCCCEEEEEcCC
Confidence 2344558999999221 11347899999999999
No 147
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=98.82 E-value=6.9e-08 Score=98.44 Aligned_cols=130 Identities=21% Similarity=0.206 Sum_probs=95.2
Q ss_pred CCCCCccHhhHHHHHHhhCCCCCCCCEEEECCCCCchHHHhHHHHHHHhhhcccCCceEEEEcccHHHHHHHHHHHHHhc
Q 017196 46 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIA 125 (375)
Q Consensus 46 ~g~~~~~~~Q~~~~~~~~~~~~~~~~~ii~a~TGsGKTl~~~l~il~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~ 125 (375)
+|. .|+++|..+- + .+..| -|..+.||-|||+++.+|++.....+. .+-|++.+-.||..=...+..+.
T Consensus 75 lG~-r~ydVQliGg---l-vLh~G--~IAEMkTGEGKTLvAtLpayLnAL~Gk----gVhVVTvNdYLA~RDae~mg~vy 143 (925)
T PRK12903 75 LGK-RPYDVQIIGG---I-ILDLG--SVAEMKTGEGKTITSIAPVYLNALTGK----GVIVSTVNEYLAERDAEEMGKVF 143 (925)
T ss_pred hCC-CcCchHHHHH---H-HHhcC--CeeeecCCCCccHHHHHHHHHHHhcCC----ceEEEecchhhhhhhHHHHHHHH
Confidence 475 8999998873 2 12234 488999999999999999987665552 48888999999997777777788
Q ss_pred cccCceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcCCCcEEEeCcHHH-HHHHhhcCC-----CCCCCcc
Q 017196 126 PAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRL-MDHINATRG-----FTLEHLC 199 (375)
Q Consensus 126 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiV~Tp~~l-~~~l~~~~~-----~~~~~~~ 199 (375)
...|+.|+.+..+...... +..-.|||+-||..-| +++++..-. .-.+.+.
T Consensus 144 ~fLGLsvG~i~~~~~~~~r-----------------------r~aY~~DItYgTn~E~gFDYLRDnm~~~~~~~vqR~~~ 200 (925)
T PRK12903 144 NFLGLSVGINKANMDPNLK-----------------------REAYACDITYSVHSELGFDYLRDNMVSSKEEKVQRGLN 200 (925)
T ss_pred HHhCCceeeeCCCCChHHH-----------------------HHhccCCCeeecCcccchhhhhhcccccHHHhcCcccc
Confidence 8889999988776443332 1123589999997654 456654221 2257788
Q ss_pred EEEEecchhh
Q 017196 200 YLVVDETDRL 209 (375)
Q Consensus 200 ~vIiDE~h~l 209 (375)
+.||||+|.+
T Consensus 201 faIVDEVDSI 210 (925)
T PRK12903 201 FCLIDEVDSI 210 (925)
T ss_pred eeeeccchhe
Confidence 9999999998
No 148
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=98.80 E-value=4.6e-08 Score=101.61 Aligned_cols=51 Identities=20% Similarity=0.350 Sum_probs=41.4
Q ss_pred CCEEEECCCCCchHHHhHHHHHHHhhhcccCCceEEEEcccHHHHHHHHHHHH
Q 017196 70 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFA 122 (375)
Q Consensus 70 ~~~ii~a~TGsGKTl~~~l~il~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~~~ 122 (375)
.++.+.++||||||.+|+-.++...... ...+.||+||+.+.-+.+.+.+.
T Consensus 60 ~n~~~~M~TGtGKT~~~~~~i~~l~~~~--~~~~fii~vp~~aI~egv~~~l~ 110 (986)
T PRK15483 60 ANIDIKMETGTGKTYVYTRLMYELHQKY--GLFKFIIVVPTPAIKEGTRNFIQ 110 (986)
T ss_pred ceEEEEeCCCCCHHHHHHHHHHHHHHHc--CCcEEEEEeCCHHHHHHHHHHhh
Confidence 4789999999999999988887766554 33479999999998887776655
No 149
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=98.80 E-value=1.3e-08 Score=104.53 Aligned_cols=148 Identities=18% Similarity=0.167 Sum_probs=109.3
Q ss_pred CccHhhHHHHHHhhCCCCCCCCEEEECCCCCchHHHhHHHHHHHhhhcccCCceEEEEcccHHHHHHHHHHHHHhccccC
Q 017196 50 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVG 129 (375)
Q Consensus 50 ~~~~~Q~~~~~~~~~~~~~~~~~ii~a~TGsGKTl~~~l~il~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~ 129 (375)
.++.||...++|+.....++-|.|+....|.|||.. .|.++..+-+.+..=..-||++||--+.+ |.-++++|++ +
T Consensus 615 qLReYQkiGLdWLatLYeknlNGILADEmGLGKTIQ-tISllAhLACeegnWGPHLIVVpTsviLn-WEMElKRwcP--g 690 (1958)
T KOG0391|consen 615 QLREYQKIGLDWLATLYEKNLNGILADEMGLGKTIQ-TISLLAHLACEEGNWGPHLIVVPTSVILN-WEMELKRWCP--G 690 (1958)
T ss_pred HHHHHHHhhHHHHHHHHHhcccceehhhhcccchhH-HHHHHHHHHhcccCCCCceEEeechhhhh-hhHHHhhhCC--c
Confidence 488999999999887666778999999999999986 56677777666544445899999976654 9999999999 7
Q ss_pred ceEEEeecCCchHHHHH-HHhhcCccccCccCCchhHHHhhcCCCcEEEeCcHHHHHHHhhcCCCCCCCccEEEEecchh
Q 017196 130 LSVGLAVGQSSIADEIS-ELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDR 208 (375)
Q Consensus 130 ~~v~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiV~Tp~~l~~~l~~~~~~~~~~~~~vIiDE~h~ 208 (375)
+++..++|...-....+ .|.+ .+..+|.|+++..+.+-+.. |.-+.+.++|+||+|.
T Consensus 691 lKILTYyGs~kErkeKRqgW~k-------------------PnaFHVCItSYklv~qd~~A---FkrkrWqyLvLDEaqn 748 (1958)
T KOG0391|consen 691 LKILTYYGSHKERKEKRQGWAK-------------------PNAFHVCITSYKLVFQDLTA---FKRKRWQYLVLDEAQN 748 (1958)
T ss_pred ceEeeecCCHHHHHHHhhcccC-------------------CCeeEEeehhhHHHHhHHHH---HHhhccceeehhhhhh
Confidence 89999999864333221 1111 12369999999888776654 5556889999999999
Q ss_pred hhhHhHHhHHHHHHHh
Q 017196 209 LLREAYQAWLPTVLQL 224 (375)
Q Consensus 209 l~~~~~~~~l~~i~~~ 224 (375)
+-+.. ...++.++++
T Consensus 749 IKnfk-sqrWQAllnf 763 (1958)
T KOG0391|consen 749 IKNFK-SQRWQALLNF 763 (1958)
T ss_pred hcchh-HHHHHHHhcc
Confidence 85543 2233445444
No 150
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A ....
Probab=98.79 E-value=2.1e-07 Score=84.22 Aligned_cols=132 Identities=25% Similarity=0.261 Sum_probs=94.6
Q ss_pred hCCCCCccHhhHHHHHHhhCCCCCCCCEEEECCCCCchHHHhHHHHHHHhhhcccCCceEEEEcccHHHHHHHHHHHHHh
Q 017196 45 NMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAI 124 (375)
Q Consensus 45 ~~g~~~~~~~Q~~~~~~~~~~~~~~~~~ii~a~TGsGKTl~~~l~il~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~ 124 (375)
..|+ .|++.|..+.=.+. .|+ +....||-|||++..+++......+. .+=|++.+..||..=+..+..+
T Consensus 73 ~~g~-~p~~vQll~~l~L~----~G~--laEm~TGEGKTli~~l~a~~~AL~G~----~V~vvT~NdyLA~RD~~~~~~~ 141 (266)
T PF07517_consen 73 TLGL-RPYDVQLLGALALH----KGR--LAEMKTGEGKTLIAALPAALNALQGK----GVHVVTSNDYLAKRDAEEMRPF 141 (266)
T ss_dssp HTS-----HHHHHHHHHHH----TTS--EEEESTTSHHHHHHHHHHHHHHTTSS-----EEEEESSHHHHHHHHHHHHHH
T ss_pred HcCC-cccHHHHhhhhhcc----cce--eEEecCCCCcHHHHHHHHHHHHHhcC----CcEEEeccHHHhhccHHHHHHH
Confidence 4575 99999999863332 344 99999999999999888877766652 5889999999999999999999
Q ss_pred ccccCceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcCCCcEEEeCcHHHH-HHHhhcCC----C-CCCCc
Q 017196 125 APAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLM-DHINATRG----F-TLEHL 198 (375)
Q Consensus 125 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiV~Tp~~l~-~~l~~~~~----~-~~~~~ 198 (375)
...+|+.+..+.++........ .-.++|+-||...+. ++++..-. . -.+.+
T Consensus 142 y~~LGlsv~~~~~~~~~~~r~~-----------------------~Y~~dI~Y~t~~~~~fD~Lrd~~~~~~~~~~~r~~ 198 (266)
T PF07517_consen 142 YEFLGLSVGIITSDMSSEERRE-----------------------AYAADIVYGTNSEFGFDYLRDNLALSKNEQVQRGF 198 (266)
T ss_dssp HHHTT--EEEEETTTEHHHHHH-----------------------HHHSSEEEEEHHHHHHHHHHHTT-SSGGG--SSSS
T ss_pred HHHhhhccccCccccCHHHHHH-----------------------HHhCcccccccchhhHHHHHHHHhhccchhccCCC
Confidence 9999999999999876543321 123589999987764 45544211 1 15788
Q ss_pred cEEEEecchhhh
Q 017196 199 CYLVVDETDRLL 210 (375)
Q Consensus 199 ~~vIiDE~h~l~ 210 (375)
+++||||+|.++
T Consensus 199 ~~~ivDEvDs~L 210 (266)
T PF07517_consen 199 DFAIVDEVDSIL 210 (266)
T ss_dssp SEEEECTHHHHT
T ss_pred CEEEEeccceEE
Confidence 999999999885
No 151
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=98.79 E-value=9.6e-08 Score=93.70 Aligned_cols=239 Identities=19% Similarity=0.211 Sum_probs=128.3
Q ss_pred CccHhhHHHHHHhhCCCCCCCCEEEECCCCCchHHHhHHHHHHHhhhcccCCceEEEEc-ccHHHHHHHHHHHH-Hhccc
Q 017196 50 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVL-PTRDLALQVKDVFA-AIAPA 127 (375)
Q Consensus 50 ~~~~~Q~~~~~~~~~~~~~~~~~ii~a~TGsGKTl~~~l~il~~l~~~~~~~~~~lil~-Pt~~L~~Q~~~~~~-~~~~~ 127 (375)
.-..++.+.+. -+..++-++|.+.||||||... -+.+...+......|.++ |.|.-|..+.+.+. ++...
T Consensus 356 Pvf~~R~~ll~----~ir~n~vvvivgETGSGKTTQl----~QyL~edGY~~~GmIGcTQPRRvAAiSVAkrVa~EM~~~ 427 (1042)
T KOG0924|consen 356 PVFACRDQLLS----VIRENQVVVIVGETGSGKTTQL----AQYLYEDGYADNGMIGCTQPRRVAAISVAKRVAEEMGVT 427 (1042)
T ss_pred chHHHHHHHHH----HHhhCcEEEEEecCCCCchhhh----HHHHHhcccccCCeeeecCchHHHHHHHHHHHHHHhCCc
Confidence 44555555433 3336777899999999999862 233444333322344444 77777776666554 33332
Q ss_pred cCceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcCCCcEEEeCcHHHHHHHhhcCCCCCCCccEEEEecch
Q 017196 128 VGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETD 207 (375)
Q Consensus 128 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiV~Tp~~l~~~l~~~~~~~~~~~~~vIiDE~h 207 (375)
.|-.|+...--.. -......|=..|.+.|+.-.-. .-.+.+.++||+||||
T Consensus 428 lG~~VGYsIRFEd---------------------------vT~~~T~IkymTDGiLLrEsL~--d~~L~kYSviImDEAH 478 (1042)
T KOG0924|consen 428 LGDTVGYSIRFED---------------------------VTSEDTKIKYMTDGILLRESLK--DRDLDKYSVIIMDEAH 478 (1042)
T ss_pred cccccceEEEeee---------------------------cCCCceeEEEeccchHHHHHhh--hhhhhheeEEEechhh
Confidence 2322221110000 0011236777898887664433 2356788999999999
Q ss_pred hhhhHhHHhHHHHHHHhhhcccccccccccccccccccccccccccccccCCCCCCCCceeEEEEEEecCCCchhhhccc
Q 017196 208 RLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLD 287 (375)
Q Consensus 208 ~l~~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~~~~~~~~~ 287 (375)
.=.- + ...+..++...-..+ | ++++|.+|||+ +...+...|
T Consensus 479 ERsl-N-tDilfGllk~~larR----------------------r-------------dlKliVtSATm--~a~kf~nfF 519 (1042)
T KOG0924|consen 479 ERSL-N-TDILFGLLKKVLARR----------------------R-------------DLKLIVTSATM--DAQKFSNFF 519 (1042)
T ss_pred hccc-c-hHHHHHHHHHHHHhh----------------------c-------------cceEEEeeccc--cHHHHHHHh
Confidence 5411 1 112222222222111 1 67899999998 356666666
Q ss_pred cCCCeEEecCCccccCcccceeEEEeccCCCcHHHHHHHHHhc-------CCCeEEEEcCChhhHHHHHHHHHH----hc
Q 017196 288 LHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSL-------GEEKCIVFTSSVESTHRLCTLLNH----FG 356 (375)
Q Consensus 288 ~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~-------~~~k~lIF~~s~~~a~~l~~~L~~----~g 356 (375)
..-|.+...+... | +.-++...+ ..+.+...+++. ..+.+|||..-.++.+-.+..++. ..
T Consensus 520 gn~p~f~IpGRTy---P--V~~~~~k~p---~eDYVeaavkq~v~Ihl~~~~GdilIfmtGqediE~t~~~i~~~l~ql~ 591 (1042)
T KOG0924|consen 520 GNCPQFTIPGRTY---P--VEIMYTKTP---VEDYVEAAVKQAVQIHLSGPPGDILIFMTGQEDIECTCDIIKEKLEQLD 591 (1042)
T ss_pred CCCceeeecCCcc---c--eEEEeccCc---hHHHHHHHHhhheEeeccCCCCCEEEecCCCcchhHHHHHHHHHHHhhh
Confidence 5445444333322 2 222222222 223333333321 446799999888776666655543 21
Q ss_pred ---CCcceEEecccccccc
Q 017196 357 ---ELRIKIKEYSGLQRQS 372 (375)
Q Consensus 357 ---~~~~~~~~lh~~~~~~ 372 (375)
..++.+..+-+.||+.
T Consensus 592 ~~~~~~L~vlpiYSQLp~d 610 (1042)
T KOG0924|consen 592 SAPTTDLAVLPIYSQLPAD 610 (1042)
T ss_pred cCCCCceEEEeehhhCchh
Confidence 2367888888888753
No 152
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=98.66 E-value=4.6e-09 Score=107.16 Aligned_cols=142 Identities=20% Similarity=0.257 Sum_probs=106.0
Q ss_pred CccHhhHHHHHHhhCCCCCCCCEEEECCCCCchHHHhHHHHHHHhhhcccCCceEEEEcccHHHHHHHHHHHHHhccccC
Q 017196 50 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVG 129 (375)
Q Consensus 50 ~~~~~Q~~~~~~~~~~~~~~~~~ii~a~TGsGKTl~~~l~il~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~ 129 (375)
.+.|.|...+..++ .-+.++++-+|||+|||.+|.+.++..+... ++.++++++|-.+|+..-.+.+......-|
T Consensus 927 ~fn~~q~~if~~~y---~td~~~~~g~ptgsgkt~~ae~a~~~~~~~~--p~~kvvyIap~kalvker~~Dw~~r~~~~g 1001 (1230)
T KOG0952|consen 927 YFNPIQTQIFHCLY---HTDLNFLLGAPTGSGKTVVAELAIFRALSYY--PGSKVVYIAPDKALVKERSDDWSKRDELPG 1001 (1230)
T ss_pred ccCCccceEEEEEe---ecchhhhhcCCccCcchhHHHHHHHHHhccC--CCccEEEEcCCchhhcccccchhhhcccCC
Confidence 45566666543333 2456789999999999999999998888776 446899999999999998888876655558
Q ss_pred ceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcCCCcEEEeCcHHHHHHHhhcCC-CCCCCccEEEEecchh
Q 017196 130 LSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRG-FTLEHLCYLVVDETDR 208 (375)
Q Consensus 130 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiV~Tp~~l~~~l~~~~~-~~~~~~~~vIiDE~h~ 208 (375)
+++..+.|....+.. .-...+++|+||++.....++++. -.+.+++++|+||.|.
T Consensus 1002 ~k~ie~tgd~~pd~~------------------------~v~~~~~~ittpek~dgi~Rsw~~r~~v~~v~~iv~de~hl 1057 (1230)
T KOG0952|consen 1002 IKVIELTGDVTPDVK------------------------AVREADIVITTPEKWDGISRSWQTRKYVQSVSLIVLDEIHL 1057 (1230)
T ss_pred ceeEeccCccCCChh------------------------heecCceEEcccccccCccccccchhhhccccceeeccccc
Confidence 999999888765422 134569999999998777775544 3588999999999997
Q ss_pred hhhHhHHhHHHHH
Q 017196 209 LLREAYQAWLPTV 221 (375)
Q Consensus 209 l~~~~~~~~l~~i 221 (375)
+.. ++.+.++.+
T Consensus 1058 lg~-~rgPVle~i 1069 (1230)
T KOG0952|consen 1058 LGE-DRGPVLEVI 1069 (1230)
T ss_pred ccC-CCcceEEEE
Confidence 744 434444433
No 153
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=98.66 E-value=7.7e-08 Score=99.64 Aligned_cols=149 Identities=19% Similarity=0.157 Sum_probs=100.5
Q ss_pred CccHhhHHHHHHhhCCCCCCCCEEEECCCCCchHHHhHHHHHHHhhhcc-----cCCceEEEEcccHHHHHHHHHHHHHh
Q 017196 50 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRA-----VRCLRALVVLPTRDLALQVKDVFAAI 124 (375)
Q Consensus 50 ~~~~~Q~~~~~~~~~~~~~~~~~ii~a~TGsGKTl~~~l~il~~l~~~~-----~~~~~~lil~Pt~~L~~Q~~~~~~~~ 124 (375)
.++.||++.++|+--.-.-+-+.|+|..+|-|||+..+=.+.....+++ ......||+||+ .|+.-|..++.++
T Consensus 975 ~LRkYQqEGVnWLaFLnky~LHGILcDDMGLGKTLQticilAsd~y~r~s~~~e~~~~PSLIVCPs-TLtGHW~~E~~kf 1053 (1549)
T KOG0392|consen 975 KLRKYQQEGVNWLAFLNKYKLHGILCDDMGLGKTLQTICILASDHYKRRSESSEFNRLPSLIVCPS-TLTGHWKSEVKKF 1053 (1549)
T ss_pred HHHHHHHhccHHHHHHHHhcccceeeccccccHHHHHHHHHHHHHHhhcccchhhccCCeEEECCc-hhhhHHHHHHHHh
Confidence 4789999998877432234567999999999999985433333332221 112238999997 6888999999999
Q ss_pred ccccCceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcCCCcEEEeCcHHHHHHHhhcCCCCCCCccEEEEe
Q 017196 125 APAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVD 204 (375)
Q Consensus 125 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiV~Tp~~l~~~l~~~~~~~~~~~~~vIiD 204 (375)
++. +++..++|+.......+ .-..+.+|+|++++.+.+-+.. +.-.++.++|+|
T Consensus 1054 ~pf--L~v~~yvg~p~~r~~lR---------------------~q~~~~~iiVtSYDv~RnD~d~---l~~~~wNYcVLD 1107 (1549)
T KOG0392|consen 1054 FPF--LKVLQYVGPPAERRELR---------------------DQYKNANIIVTSYDVVRNDVDY---LIKIDWNYCVLD 1107 (1549)
T ss_pred cch--hhhhhhcCChHHHHHHH---------------------hhccccceEEeeHHHHHHHHHH---HHhcccceEEec
Confidence 986 78888888765444432 1233469999999988754433 223467799999
Q ss_pred cchhhhhHhHHhHHHHHHHhhhc
Q 017196 205 ETDRLLREAYQAWLPTVLQLTRS 227 (375)
Q Consensus 205 E~h~l~~~~~~~~l~~i~~~l~~ 227 (375)
|-|.+-+.. ..+....+.+..
T Consensus 1108 EGHVikN~k--tkl~kavkqL~a 1128 (1549)
T KOG0392|consen 1108 EGHVIKNSK--TKLTKAVKQLRA 1128 (1549)
T ss_pred CcceecchH--HHHHHHHHHHhh
Confidence 999774433 334555555544
No 154
>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=98.62 E-value=4e-06 Score=79.74 Aligned_cols=260 Identities=19% Similarity=0.172 Sum_probs=134.8
Q ss_pred CccccCCCCCCCCCCHHHHHHHHhCCCCCccHhhHHHHHHhhCCCCCCCCEEEECCCCCchHHHhHHHHHHHhhhcccCC
Q 017196 22 SLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRC 101 (375)
Q Consensus 22 ~~~~~~~~~~~~~l~~~i~~~l~~~g~~~~~~~Q~~~~~~~~~~~~~~~~~ii~a~TGsGKTl~~~l~il~~l~~~~~~~ 101 (375)
..|...| ..+.....+++.--..-|.++.+- ++.+.+++-+++.+.||||||...==+++...... .
T Consensus 25 Npf~~~p------~s~rY~~ilk~R~~LPvw~~k~~F----~~~l~~nQ~~v~vGetgsGKttQiPq~~~~~~~~~--~- 91 (699)
T KOG0925|consen 25 NPFNGKP------YSQRYYDILKKRRELPVWEQKEEF----LKLLLNNQIIVLVGETGSGKTTQIPQFVLEYELSH--L- 91 (699)
T ss_pred CCCCCCc------CcHHHHHHHHHHhcCchHHhHHHH----HHHHhcCceEEEEecCCCCccccCcHHHHHHHHhh--c-
Confidence 3455555 667777777765433344444443 44444788899999999999975211222222221 1
Q ss_pred ceEEEEcccHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcCCCcEEEeCcH
Q 017196 102 LRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPG 181 (375)
Q Consensus 102 ~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiV~Tp~ 181 (375)
..+..--|.+.-|.++.++.. ...++..+.-+|-+-. .+-|..++.++ -.+|.+
T Consensus 92 ~~v~CTQprrvaamsva~RVa---dEMDv~lG~EVGysIr--------------fEdC~~~~T~L---------ky~tDg 145 (699)
T KOG0925|consen 92 TGVACTQPRRVAAMSVAQRVA---DEMDVTLGEEVGYSIR--------------FEDCTSPNTLL---------KYCTDG 145 (699)
T ss_pred cceeecCchHHHHHHHHHHHH---HHhccccchhcccccc--------------ccccCChhHHH---------HHhcch
Confidence 235555577776666555443 3334443332332110 00011111111 124555
Q ss_pred HHHHHHhhcCCCCCCCccEEEEecchhhhhHhHHhHHHHHHHhhhcccccccccccccccccccccccccccccccCCCC
Q 017196 182 RLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKD 261 (375)
Q Consensus 182 ~l~~~l~~~~~~~~~~~~~vIiDE~h~l~~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (375)
.|++-..+. -.+..+++||+||||.=-- . ...+..++......+
T Consensus 146 mLlrEams~--p~l~~y~viiLDeahERtl-A-TDiLmGllk~v~~~r-------------------------------- 189 (699)
T KOG0925|consen 146 MLLREAMSD--PLLGRYGVIILDEAHERTL-A-TDILMGLLKEVVRNR-------------------------------- 189 (699)
T ss_pred HHHHHHhhC--cccccccEEEechhhhhhH-H-HHHHHHHHHHHHhhC--------------------------------
Confidence 554444332 2467899999999994311 1 122333333322221
Q ss_pred CCCCceeEEEEEEecCCCchhhhccccCCCeEEecCCccccCcccceeEEEeccCCCcHHHHHHHH-H---hcCCCeEEE
Q 017196 262 KPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALL-Q---SLGEEKCIV 337 (375)
Q Consensus 262 ~~~~~~q~i~~SATl~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll-~---~~~~~k~lI 337 (375)
+.+++|.||||+- ..++...| .+.-.+.+.... .++.+|......+-.+.....+ . ....+-+|+
T Consensus 190 ---pdLk~vvmSatl~--a~Kfq~yf-~n~Pll~vpg~~-----PvEi~Yt~e~erDylEaairtV~qih~~ee~GDilv 258 (699)
T KOG0925|consen 190 ---PDLKLVVMSATLD--AEKFQRYF-GNAPLLAVPGTH-----PVEIFYTPEPERDYLEAAIRTVLQIHMCEEPGDILV 258 (699)
T ss_pred ---CCceEEEeecccc--hHHHHHHh-CCCCeeecCCCC-----ceEEEecCCCChhHHHHHHHHHHHHHhccCCCCEEE
Confidence 1678999999973 34444444 444444443321 2333443333333333332222 2 235668999
Q ss_pred EcCChhhHHHHHHHHHHhc------CCcceEEeccc
Q 017196 338 FTSSVESTHRLCTLLNHFG------ELRIKIKEYSG 367 (375)
Q Consensus 338 F~~s~~~a~~l~~~L~~~g------~~~~~~~~lh~ 367 (375)
|....++.+..|+.+...+ .....|..+|.
T Consensus 259 FLtgeeeIe~aC~~i~re~~~L~~~~g~l~v~PLyP 294 (699)
T KOG0925|consen 259 FLTGEEEIEDACRKISREVDNLGPQVGPLKVVPLYP 294 (699)
T ss_pred EecCHHHHHHHHHHHHHHHHhhccccCCceEEecCc
Confidence 9999999988888876332 22456777774
No 155
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=98.61 E-value=4.6e-06 Score=80.35 Aligned_cols=245 Identities=19% Similarity=0.198 Sum_probs=136.7
Q ss_pred cCCceEEEEcccHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHHhhcC-----ccc-c-CccCCchhHHHh---
Q 017196 99 VRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRP-----KLE-A-GICYDPEDVLQE--- 168 (375)
Q Consensus 99 ~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~-----~~~-~-~~~~~~~~~~~~--- 168 (375)
-..|++|||+|+|.-|-++.+.+.++++.. ..........+-...+ +.. . .....|.+..+.
T Consensus 35 ftRPkVLIL~P~R~~A~~~V~~Li~l~~~~--------~~~~nk~RF~~efg~~~~~~~~~~~~~~~~~kP~D~~~~F~G 106 (442)
T PF06862_consen 35 FTRPKVLILLPFRNSALRIVETLISLLPPG--------KQVENKKRFEEEFGLPEDEDDDEEPPEFKKSKPEDFKALFSG 106 (442)
T ss_pred CCCceEEEEcccHHHHHHHHHHHHHHcCcc--------chHHHHHHHHHHcCCCccccchhhhccccCCCchhHHHhcCC
Confidence 456799999999999999999998887641 0000011111101000 000 0 001112222211
Q ss_pred ------------------h---cCCCcEEEeCcHHHHHHHhh----cCCCC-CCCccEEEEecchhhhhHhHHhHHHHHH
Q 017196 169 ------------------L---QSAVDILVATPGRLMDHINA----TRGFT-LEHLCYLVVDETDRLLREAYQAWLPTVL 222 (375)
Q Consensus 169 ------------------~---~~~~~IiV~Tp~~l~~~l~~----~~~~~-~~~~~~vIiDE~h~l~~~~~~~~l~~i~ 222 (375)
+ -.++||||++|=-|...+.. .+..+ ++.+.++|+|.||.++-.+| +++..++
T Consensus 107 N~DD~FrlGik~trk~ikLys~Fy~SDIIiASPLGLr~~i~~~~~~~~d~DFLSSIEv~iiD~ad~l~MQNW-~Hv~~v~ 185 (442)
T PF06862_consen 107 NNDDCFRLGIKFTRKSIKLYSDFYSSDIIIASPLGLRMIIGEEGEKKRDYDFLSSIEVLIIDQADVLLMQNW-EHVLHVF 185 (442)
T ss_pred CccceEEEeEEEecCeeeeecccccCCEEEEChHHHHHHhccccccccccchhheeeeEeechhhHHHHhhH-HHHHHHH
Confidence 1 12579999999998888874 12222 78899999999999987775 4566677
Q ss_pred Hhhhcccc-cccccccccccccccccccccccccccCCCCCCCCceeEEEEEEecCCCchhhhccccCC---CeEEecCC
Q 017196 223 QLTRSDNE-NRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHH---PLFLTTGE 298 (375)
Q Consensus 223 ~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~~~~~~~~~~~~---~~~i~~~~ 298 (375)
+.+...+. .+..+-+.-++.+..+. +.--.|.+++|+...+.+..+....+.+ .+.+....
T Consensus 186 ~~lN~~P~~~~~~DfsRVR~w~Ldg~---------------a~~~RQtii~S~~~~pe~~slf~~~~~N~~G~v~~~~~~ 250 (442)
T PF06862_consen 186 EHLNLQPKKSHDTDFSRVRPWYLDGQ---------------AKYYRQTIIFSSFQTPEINSLFNRHCQNYAGKVRLKPPY 250 (442)
T ss_pred HHhccCCCCCCCCCHHHHHHHHHcCc---------------chheeEeEEecCCCCHHHHHHHHhhCcCccceEEEeecc
Confidence 77665442 11121111111111111 1113599999999988888777664433 22222222
Q ss_pred cc----ccCcccceeEEEeccCC-------CcHHHH----HHHHH-hcCCCeEEEEcCChhhHHHHHHHHHHhcCCcceE
Q 017196 299 TR----YKLPERLESYKLICESK-------LKPLYL----VALLQ-SLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKI 362 (375)
Q Consensus 299 ~~----~~~~~~i~~~~~~~~~~-------~k~~~l----~~ll~-~~~~~k~lIF~~s~~~a~~l~~~L~~~g~~~~~~ 362 (375)
.. ..+...+.+.+.-.+.. .+.+.. ..-+. ....+.+|||++|--+=-.+.++|++ .++..
T Consensus 251 ~~~g~i~~v~~~v~Q~F~r~~~~s~~~~~d~Rf~yF~~~iLP~l~~~~~~~~~LIfIPSYfDfVRlRN~lk~---~~~sF 327 (442)
T PF06862_consen 251 EASGVISQVVVQVRQVFQRFDCSSPADDPDARFKYFTKKILPQLKRDSKMSGTLIFIPSYFDFVRLRNYLKK---ENISF 327 (442)
T ss_pred ccceeeeccccCCceEEEEecCCCcchhhhHHHHHHHHHHHHHhhhccCCCcEEEEecchhhhHHHHHHHHh---cCCeE
Confidence 21 12334555655543322 122221 12222 33456899999999999999999994 34666
Q ss_pred Eecccccc
Q 017196 363 KEYSGLQR 370 (375)
Q Consensus 363 ~~lh~~~~ 370 (375)
..+|=-.+
T Consensus 328 ~~i~EYts 335 (442)
T PF06862_consen 328 VQISEYTS 335 (442)
T ss_pred EEecccCC
Confidence 66654333
No 156
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=98.60 E-value=1.4e-07 Score=84.10 Aligned_cols=85 Identities=21% Similarity=0.221 Sum_probs=51.4
Q ss_pred CccHhhHHHHHHhhCCCCCCCC-EEEECCCCCchHHHhHHHHHHHhh-----hcccCCceEEEEcccHHHHHHHHHHHHH
Q 017196 50 SLFPVQVAVWQETIGPGLFERD-LCINSPTGSGKTLSYALPIVQTLS-----NRAVRCLRALVVLPTRDLALQVKDVFAA 123 (375)
Q Consensus 50 ~~~~~Q~~~~~~~~~~~~~~~~-~ii~a~TGsGKTl~~~l~il~~l~-----~~~~~~~~~lil~Pt~~L~~Q~~~~~~~ 123 (375)
++++.|.+|+..++ +... .+|.||.|||||.+.. .++..+. .....+.++|+++||..-++++...+.+
T Consensus 1 ~ln~~Q~~Ai~~~~----~~~~~~~i~GpPGTGKT~~l~-~~i~~~~~~~~~~~~~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 1 KLNESQREAIQSAL----SSNGITLIQGPPGTGKTTTLA-SIIAQLLQRFKSRSADRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp ---HHHHHHHHHHC----TSSE-EEEE-STTSSHHHHHH-HHHHHH-------HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHH----cCCCCEEEECCCCCChHHHHH-HHHHHhccchhhhhhhccccceeecCCchhHHHHHHHHHh
Confidence 36789999998877 3455 8999999999996533 3444441 1123556899999999999999999887
Q ss_pred h----ccccCceEEEeecCC
Q 017196 124 I----APAVGLSVGLAVGQS 139 (375)
Q Consensus 124 ~----~~~~~~~v~~~~~~~ 139 (375)
+ .......+..+....
T Consensus 76 ~~~~~~~~~~~~~ir~~~~~ 95 (236)
T PF13086_consen 76 LLDEDGKVYKPKIIRLGSEE 95 (236)
T ss_dssp --------TT--EEE---GG
T ss_pred hccccccccccchhhhcccc
Confidence 2 112234555554443
No 157
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=98.53 E-value=4.4e-07 Score=86.21 Aligned_cols=131 Identities=19% Similarity=0.176 Sum_probs=91.3
Q ss_pred CCccHhhHHHHHHhhCCCC-CCCCEEEECCCCCchHHHhHHHHHHHhhhcccCCceEEEEcccHHHHHHHHHHHHHhccc
Q 017196 49 SSLFPVQVAVWQETIGPGL-FERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPA 127 (375)
Q Consensus 49 ~~~~~~Q~~~~~~~~~~~~-~~~~~ii~a~TGsGKTl~~~l~il~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~ 127 (375)
..+.|+|.+.+-++...-. .-...++...+|.|||...+-.++..+ .+..+|+++|+.+|. ||..++.++..
T Consensus 183 i~LL~fQkE~l~Wl~~QE~Ss~~GGiLADEMGMGKTIQtIaLllae~-----~ra~tLVvaP~VAlm-QW~nEI~~~T~- 255 (791)
T KOG1002|consen 183 IPLLPFQKEGLAWLTSQEESSVAGGILADEMGMGKTIQTIALLLAEV-----DRAPTLVVAPTVALM-QWKNEIERHTS- 255 (791)
T ss_pred ecchhhhHHHHHHHHHhhhhhhccceehhhhccchHHHHHHHHHhcc-----ccCCeeEEccHHHHH-HHHHHHHHhcc-
Confidence 4789999998877653222 223578899999999988644444422 333599999999975 79999999987
Q ss_pred cCceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcCCCcEEEeCcHHHHHHHhhc-CCCC-----------C
Q 017196 128 VGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINAT-RGFT-----------L 195 (375)
Q Consensus 128 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiV~Tp~~l~~~l~~~-~~~~-----------~ 195 (375)
..+++..++|..-..+- +--.+||++++|+..+-+..++. .++. +
T Consensus 256 gslkv~~YhG~~R~~ni-----------------------kel~~YDvVLTty~vvEs~yRk~~~GfrrKngv~ke~SlL 312 (791)
T KOG1002|consen 256 GSLKVYIYHGAKRDKNI-----------------------KELMNYDVVLTTYAVVESVYRKQDYGFRRKNGVDKEKSLL 312 (791)
T ss_pred CceEEEEEecccccCCH-----------------------HHhhcCcEEEEecHHHHHHHHhccccccccCCcccccchh
Confidence 46888888887543222 11347899999999887766541 1111 1
Q ss_pred CC--ccEEEEecchhh
Q 017196 196 EH--LCYLVVDETDRL 209 (375)
Q Consensus 196 ~~--~~~vIiDE~h~l 209 (375)
-. +--||+||||.+
T Consensus 313 Hsi~~~RiIlDEAH~I 328 (791)
T KOG1002|consen 313 HSIKFYRIILDEAHNI 328 (791)
T ss_pred hhceeeeeehhhhccc
Confidence 22 335999999998
No 158
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]
Probab=98.52 E-value=1.7e-07 Score=95.54 Aligned_cols=135 Identities=16% Similarity=0.193 Sum_probs=93.5
Q ss_pred CCccHhhHHHHHHhhCCCCCCCCEEEECCCCCchHHHhHHHHHHHhhhcccCCceEEEEcccHHHHHHHHHHHHHhcccc
Q 017196 49 SSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAV 128 (375)
Q Consensus 49 ~~~~~~Q~~~~~~~~~~~~~~~~~ii~a~TGsGKTl~~~l~il~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~ 128 (375)
.++.+||...+++++....++-|.|+...+|.|||.. .+..+..+.....-...-+|+||+-.|.+ |...+..+++
T Consensus 393 G~Lk~YQl~GLqWmVSLyNNnLNGILADEMGLGKTIQ-tIsLitYLmE~K~~~GP~LvivPlstL~N-W~~Ef~kWaP-- 468 (1157)
T KOG0386|consen 393 GELKEYQLHGLQWMVSLYNNNLNGILADEMGLGKTIQ-TISLITYLMEHKQMQGPFLIIVPLSTLVN-WSSEFPKWAP-- 468 (1157)
T ss_pred CCCchhhhhhhHHHhhccCCCcccccchhcccchHHH-HHHHHHHHHHHcccCCCeEEeccccccCC-chhhcccccc--
Confidence 4899999999999987777778999999999999987 45555555554333334789999988886 8888888776
Q ss_pred CceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcCCCcEEEeCcHHHHHHHhhcCC-CCCCCccEEEEecch
Q 017196 129 GLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRG-FTLEHLCYLVVDETD 207 (375)
Q Consensus 129 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiV~Tp~~l~~~l~~~~~-~~~~~~~~vIiDE~h 207 (375)
.+....+.|......... .+...+..+|+++|++.+.. .+. +.--++.++||||-|
T Consensus 469 Sv~~i~YkGtp~~R~~l~-------------------~qir~gKFnVLlTtyEyiik----dk~lLsKI~W~yMIIDEGH 525 (1157)
T KOG0386|consen 469 SVQKIQYKGTPQQRSGLT-------------------KQQRHGKFNVLLTTYEYIIK----DKALLSKISWKYMIIDEGH 525 (1157)
T ss_pred ceeeeeeeCCHHHHhhHH-------------------HHHhcccceeeeeeHHHhcC----CHHHHhccCCcceeecccc
Confidence 344445544432211111 11223568999999876654 111 223456799999999
Q ss_pred hhh
Q 017196 208 RLL 210 (375)
Q Consensus 208 ~l~ 210 (375)
+|-
T Consensus 526 RmK 528 (1157)
T KOG0386|consen 526 RMK 528 (1157)
T ss_pred ccc
Confidence 993
No 159
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=98.49 E-value=6.4e-07 Score=95.23 Aligned_cols=129 Identities=18% Similarity=0.183 Sum_probs=82.2
Q ss_pred CCCCEEEECCCCCchHHHhHHHHHHHhhhcccCCceEEEEcccHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHH
Q 017196 68 FERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISE 147 (375)
Q Consensus 68 ~~~~~ii~a~TGsGKTl~~~l~il~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 147 (375)
.++..+|.=-||||||++.+. +...+... ...+.+++|+-.++|-.|+...++.+........ ....
T Consensus 272 ~~~~G~IWHtqGSGKTlTm~~-~A~~l~~~-~~~~~v~fvvDR~dLd~Q~~~~f~~~~~~~~~~~-----~~~s------ 338 (962)
T COG0610 272 DGKGGYIWHTQGSGKTLTMFK-LARLLLEL-PKNPKVLFVVDRKDLDDQTSDEFQSFGKVAFNDP-----KAES------ 338 (962)
T ss_pred cCCceEEEeecCCchHHHHHH-HHHHHHhc-cCCCeEEEEechHHHHHHHHHHHHHHHHhhhhcc-----cccC------
Confidence 345689999999999998544 44444443 4667899999999999999999998876432211 1111
Q ss_pred HhhcCccccCccCCchhHHHhhcC-CCcEEEeCcHHHHHHHhhcCCC-CCCCccEEEEecchhhhhHhHHhHHHHHHHhh
Q 017196 148 LIKRPKLEAGICYDPEDVLQELQS-AVDILVATPGRLMDHINATRGF-TLEHLCYLVVDETDRLLREAYQAWLPTVLQLT 225 (375)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~IiV~Tp~~l~~~l~~~~~~-~~~~~~~vIiDE~h~l~~~~~~~~l~~i~~~l 225 (375)
.++..+.+.. ...|+|||.++|-..+...... .-+.=-+||+||||+- .|+..-..+...+
T Consensus 339 --------------~~~Lk~~l~~~~~~ii~TTIQKf~~~~~~~~~~~~~~~~ivvI~DEaHRS---Q~G~~~~~~~~~~ 401 (962)
T COG0610 339 --------------TSELKELLEDGKGKIIVTTIQKFNKAVKEDELELLKRKNVVVIIDEAHRS---QYGELAKLLKKAL 401 (962)
T ss_pred --------------HHHHHHHHhcCCCcEEEEEecccchhhhcccccccCCCcEEEEEechhhc---cccHHHHHHHHHh
Confidence 1222233333 3489999999998877653111 1223338999999944 4443333333333
Q ss_pred h
Q 017196 226 R 226 (375)
Q Consensus 226 ~ 226 (375)
+
T Consensus 402 ~ 402 (962)
T COG0610 402 K 402 (962)
T ss_pred c
Confidence 3
No 160
>KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification]
Probab=98.47 E-value=7.1e-07 Score=86.11 Aligned_cols=271 Identities=13% Similarity=0.012 Sum_probs=158.5
Q ss_pred HHHHHhCCCCCccHhhHHHHHHhhCCCCCCCCEEEECCCCCchHHHhHHHHHHHhhhcccCCceEEEEcccHHHHHHHHH
Q 017196 40 KVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKD 119 (375)
Q Consensus 40 ~~~l~~~g~~~~~~~Q~~~~~~~~~~~~~~~~~ii~a~TGsGKTl~~~l~il~~l~~~~~~~~~~lil~Pt~~L~~Q~~~ 119 (375)
.+.++++..+....+|.++++.+ ..|+++++.-.|.+||.++|.+.......... ....+++.|+.++++...+
T Consensus 276 ~~~~~~~~~E~~~~~~~~~~~~~----~~G~~~~~~~~~~~GK~~~~~~~s~~~~~~~~--~s~~~~~~~~~~~~~~~~~ 349 (1034)
T KOG4150|consen 276 RSLLNKNTGESGIAISLELLKFA----SEGRADGGNEARQAGKGTCPTSGSRKFQTLCH--ATNSLLPSEMVEHLRNGSK 349 (1034)
T ss_pred HHHHhcccccchhhhhHHHHhhh----hhcccccccchhhcCCccCcccchhhhhhcCc--ccceecchhHHHHhhccCC
Confidence 34456666678999999986544 47999999999999999999998877666552 2357899999998875544
Q ss_pred HHHHhcccc-Cc--eEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcCCCcEEEeCcHHHHHHHhhcCCCC--
Q 017196 120 VFAAIAPAV-GL--SVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFT-- 194 (375)
Q Consensus 120 ~~~~~~~~~-~~--~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiV~Tp~~l~~~l~~~~~~~-- 194 (375)
.+.-+.... .. .++..+.+.+-..+ ..-...+..++.+.|+.+...+.. ...+
T Consensus 350 ~~~V~~~~I~~~K~A~V~~~D~~sE~~~---------------------~A~~R~~~~~~~s~~~~~~s~~L~-~~~~~~ 407 (1034)
T KOG4150|consen 350 GQVVHVEVIKARKSAYVEMSDKLSETTK---------------------SALKRIGLNTLYSHQAEAISAALA-KSLCYN 407 (1034)
T ss_pred ceEEEEEehhhhhcceeecccCCCchhH---------------------HHHHhcCcceeecCHHHHHHHHhh-hccccc
Confidence 333221111 01 11111222111111 112334678999999988766543 2232
Q ss_pred --CCCccEEEEecchhhhhHhHH----hHHHHHHHhhhcccccccccccccccccccccccccccccccCCCCCCCCcee
Q 017196 195 --LEHLCYLVVDETDRLLREAYQ----AWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLV 268 (375)
Q Consensus 195 --~~~~~~vIiDE~h~l~~~~~~----~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q 268 (375)
+-+..++++||+|... .-+. ..+..+..++...- ...+.|
T Consensus 408 ~~~~~~~~~~~~~~~~Y~-~~~~~~~~~~~R~L~~L~~~F~---------------------------------~~~~~~ 453 (1034)
T KOG4150|consen 408 VPVFEELCKDTNSCALYL-FPTKALAQDQLRALSDLIKGFE---------------------------------ASINMG 453 (1034)
T ss_pred cHHHHHHHhcccceeeee-cchhhHHHHHHHHHHHHHHHHH---------------------------------hhcCcc
Confidence 3456789999999553 2222 22333333332211 112678
Q ss_pred EEEEEEecCCCchhhhccccCCCeEEecCCccccCcccceeEEEeccC------CCcHHHHH---HHHHhc--CCCeEEE
Q 017196 269 KMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICES------KLKPLYLV---ALLQSL--GEEKCIV 337 (375)
Q Consensus 269 ~i~~SATl~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~~~~~~~------~~k~~~l~---~ll~~~--~~~k~lI 337 (375)
++-.+||+-.........+.-+.+........ |..-++++++.+. ..|...+. .++.+. .+-++|-
T Consensus 454 ~~~~~~~~K~~~~~~~~~~~~~E~~Li~~DGS---Ps~~K~~V~WNP~~~P~~~~~~~~~i~E~s~~~~~~i~~~~R~IA 530 (1034)
T KOG4150|consen 454 VYDGDTPYKDRTRLRSELANLSELELVTIDGS---PSSEKLFVLWNPSAPPTSKSEKSSKVVEVSHLFAEMVQHGLRCIA 530 (1034)
T ss_pred eEeCCCCcCCHHHHHHHhcCCcceEEEEecCC---CCccceEEEeCCCCCCcchhhhhhHHHHHHHHHHHHHHcCCcEEE
Confidence 99999999665444444333333333222222 4567777776552 12222222 222222 3558999
Q ss_pred EcCChhhHHHHHHHHHHh----c-CCcceEEeccccccccccC
Q 017196 338 FTSSVESTHRLCTLLNHF----G-ELRIKIKEYSGLQRQSVRR 375 (375)
Q Consensus 338 F~~s~~~a~~l~~~L~~~----g-~~~~~~~~lh~~~~~~~R~ 375 (375)
||.+++-|+-+....+.. | ..--.+..|.||.+.++||
T Consensus 531 FC~~R~~CEL~~~~~R~I~~ET~~~LV~~i~SYRGGY~A~DRR 573 (1034)
T KOG4150|consen 531 FCPSRKLCELVLCLTREILAETAPHLVEAITSYRGGYIAEDRR 573 (1034)
T ss_pred eccHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcCccchhhHH
Confidence 999999998877655432 1 1112466788888888885
No 161
>KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=98.39 E-value=3.8e-07 Score=89.87 Aligned_cols=137 Identities=18% Similarity=0.191 Sum_probs=90.6
Q ss_pred CccHhhHHHHHHhhCCC-CCCCCEEEECCCCCchHHHhHHHHHHHhhh-----ccc-CCceEEEEcccHHHHHHHHHHHH
Q 017196 50 SLFPVQVAVWQETIGPG-LFERDLCINSPTGSGKTLSYALPIVQTLSN-----RAV-RCLRALVVLPTRDLALQVKDVFA 122 (375)
Q Consensus 50 ~~~~~Q~~~~~~~~~~~-~~~~~~ii~a~TGsGKTl~~~l~il~~l~~-----~~~-~~~~~lil~Pt~~L~~Q~~~~~~ 122 (375)
.+-|+|..++.+++-.- ..+...|+....|-|||++.+-.++++-.. ... ....+|||||- .|+.||+.++.
T Consensus 325 ~LmpHQkaal~Wl~wRE~q~~~GGILaddmGLGKTlsmislil~qK~~~~~~~~~~~~a~~TLII~Pa-Sli~qW~~Ev~ 403 (901)
T KOG4439|consen 325 ELMPHQKAALRWLLWRESQPPSGGILADDMGLGKTLSMISLILHQKAARKAREKKGESASKTLIICPA-SLIHQWEAEVA 403 (901)
T ss_pred ecchhhhhhhhhhcccccCCCCCcccccccccccchHHHHHHHHHHHHHHhhcccccccCCeEEeCcH-HHHHHHHHHHH
Confidence 57899999988876322 123568999999999999754444433211 111 11259999996 78889999998
Q ss_pred HhccccCceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcCCCcEEEeCcHHHHH----HHhhcCC---CCC
Q 017196 123 AIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMD----HINATRG---FTL 195 (375)
Q Consensus 123 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiV~Tp~~l~~----~l~~~~~---~~~ 195 (375)
.-....-++|..++|.... ++....-..|||||+|+.-+.. -....+. +.-
T Consensus 404 ~rl~~n~LsV~~~HG~n~r----------------------~i~~~~L~~YDvViTTY~lva~~~~~e~~~~~~~spL~~ 461 (901)
T KOG4439|consen 404 RRLEQNALSVYLYHGPNKR----------------------EISAKELRKYDVVITTYNLVANKPDDELEEGKNSSPLAR 461 (901)
T ss_pred HHHhhcceEEEEecCCccc----------------------cCCHHHHhhcceEEEeeeccccCCchhhhcccCccHHHH
Confidence 7777768999999997631 1112334578999999875544 1111111 111
Q ss_pred CCccEEEEecchhh
Q 017196 196 EHLCYLVVDETDRL 209 (375)
Q Consensus 196 ~~~~~vIiDE~h~l 209 (375)
-.+.-||+||||.+
T Consensus 462 I~W~RVILDEAH~I 475 (901)
T KOG4439|consen 462 IAWSRVILDEAHNI 475 (901)
T ss_pred hhHHHhhhhhhhhh
Confidence 23557999999988
No 162
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=98.39 E-value=2.3e-05 Score=80.57 Aligned_cols=73 Identities=23% Similarity=0.192 Sum_probs=57.2
Q ss_pred CCCCccHhhHHHHHHhhCCCCCCC-CEEEECCCCCchHHHhHHHHHHHhhhcccCCceEEEEcccHHHHHHHHHHHHHhc
Q 017196 47 GISSLFPVQVAVWQETIGPGLFER-DLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIA 125 (375)
Q Consensus 47 g~~~~~~~Q~~~~~~~~~~~~~~~-~~ii~a~TGsGKTl~~~l~il~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~ 125 (375)
.| .|+..|..+++.+...+..+. ..++.+.+|+|||+.++ .++... +..+|||+|+.+.|.|++..++.+.
T Consensus 10 ~~-~~~~~Q~~ai~~l~~~~~~~~~~~ll~Gl~gs~ka~lia-~l~~~~------~r~vLIVt~~~~~A~~l~~dL~~~~ 81 (652)
T PRK05298 10 PY-KPAGDQPQAIEELVEGIEAGEKHQTLLGVTGSGKTFTMA-NVIARL------QRPTLVLAHNKTLAAQLYSEFKEFF 81 (652)
T ss_pred CC-CCChHHHHHHHHHHHhhhcCCCcEEEEcCCCcHHHHHHH-HHHHHh------CCCEEEEECCHHHHHHHHHHHHHhc
Confidence 44 899999999999988776553 57799999999998643 222221 1259999999999999999999987
Q ss_pred cc
Q 017196 126 PA 127 (375)
Q Consensus 126 ~~ 127 (375)
+.
T Consensus 82 ~~ 83 (652)
T PRK05298 82 PE 83 (652)
T ss_pred CC
Confidence 64
No 163
>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair]
Probab=98.38 E-value=7.6e-07 Score=87.85 Aligned_cols=144 Identities=14% Similarity=0.163 Sum_probs=100.5
Q ss_pred CccHhhHHHHHHhhCCCCCCCCEEEECCCCCchHHHhHHHHHHHhhh-cccCCceEEEEcccHHHHHHHHHHHHHhcccc
Q 017196 50 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSN-RAVRCLRALVVLPTRDLALQVKDVFAAIAPAV 128 (375)
Q Consensus 50 ~~~~~Q~~~~~~~~~~~~~~~~~ii~a~TGsGKTl~~~l~il~~l~~-~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~ 128 (375)
++..||...++++......|-|.|+...+|.|||... +.++..+.. .+.-+| -|+++|.-.|- -|.+++.+|++
T Consensus 567 tLKEYQlkGLnWLvnlYdqGiNGILADeMGLGKTVQs-isvlAhLaE~~nIwGP-FLVVtpaStL~-NWaqEisrFlP-- 641 (1185)
T KOG0388|consen 567 TLKEYQLKGLNWLVNLYDQGINGILADEMGLGKTVQS-ISVLAHLAETHNIWGP-FLVVTPASTLH-NWAQEISRFLP-- 641 (1185)
T ss_pred hhHHHhhccHHHHHHHHHccccceehhhhccchhHHH-HHHHHHHHHhccCCCc-eEEeehHHHHh-HHHHHHHHhCc--
Confidence 6778999999999877778999999999999999875 445555544 444443 78889987764 59999999998
Q ss_pred CceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcCCCcEEEeCcHHHHHHHhhcCCCCCCCccEEEEecchh
Q 017196 129 GLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDR 208 (375)
Q Consensus 129 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiV~Tp~~l~~~l~~~~~~~~~~~~~vIiDE~h~ 208 (375)
.+++..+.|+.+-....+++..+. .+ -.-..+.+|+|+|++.+..--+- +.--.+.+.|+|||+.
T Consensus 642 ~~k~lpywGs~~eRkiLrKfw~rK-----------nm-Y~rna~fhVviTSYQlvVtDeky---~qkvKWQYMILDEAQA 706 (1185)
T KOG0388|consen 642 SFKVLPYWGSPSERKILRKFWNRK-----------NM-YRRNAPFHVVITSYQLVVTDEKY---LQKVKWQYMILDEAQA 706 (1185)
T ss_pred cceeecCcCChhhhHHHHHhcchh-----------hh-hccCCCceEEEEeeeeeechHHH---HHhhhhhheehhHHHH
Confidence 688999999877655554433321 01 01124579999998765432111 1112456899999998
Q ss_pred hhhHh
Q 017196 209 LLREA 213 (375)
Q Consensus 209 l~~~~ 213 (375)
+-...
T Consensus 707 IKSSs 711 (1185)
T KOG0388|consen 707 IKSSS 711 (1185)
T ss_pred hhhhh
Confidence 85543
No 164
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1
Probab=98.25 E-value=1.3e-05 Score=73.02 Aligned_cols=134 Identities=16% Similarity=0.067 Sum_probs=84.0
Q ss_pred CccHhhHHHHHHhhCC----CC--CCCCEEEECCCCCchHHHhHHHHHHHhhhcccCCceEEEEcccHHHHHHHHHHHHH
Q 017196 50 SLFPVQVAVWQETIGP----GL--FERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAA 123 (375)
Q Consensus 50 ~~~~~Q~~~~~~~~~~----~~--~~~~~ii~a~TGsGKTl~~~l~il~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~ 123 (375)
.++..|.+++=..... +. .+...++-..||.||--..+-.+++...++. .++|+++.+.+|.....+.++.
T Consensus 37 ~LS~~QLEaV~yA~q~h~~~Lp~~~R~Gf~lGDGtGvGKGR~iAgiI~~n~l~Gr---~r~vwvS~s~dL~~Da~RDl~D 113 (303)
T PF13872_consen 37 LLSALQLEAVIYACQRHEQILPGGSRAGFFLGDGTGVGKGRQIAGIILENWLRGR---KRAVWVSVSNDLKYDAERDLRD 113 (303)
T ss_pred cccHHHHHHHHHHHHHHHhhcccccCcEEEeccCCCcCccchhHHHHHHHHHcCC---CceEEEECChhhhhHHHHHHHH
Confidence 5678888875433211 11 2344677789999998876666777776653 2699999999999999999998
Q ss_pred hccccCceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcCCCcEEEeCcHHHHHHHhhcCC--C-------C
Q 017196 124 IAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRG--F-------T 194 (375)
Q Consensus 124 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiV~Tp~~l~~~l~~~~~--~-------~ 194 (375)
+... .+.+..+..-.. . ....-...|+++|+..|...-..... . +
T Consensus 114 IG~~-~i~v~~l~~~~~---~----------------------~~~~~~~GvlF~TYs~L~~~~~~~~~~~sRl~ql~~W 167 (303)
T PF13872_consen 114 IGAD-NIPVHPLNKFKY---G----------------------DIIRLKEGVLFSTYSTLISESQSGGKYRSRLDQLVDW 167 (303)
T ss_pred hCCC-cccceechhhcc---C----------------------cCCCCCCCccchhHHHHHhHHhccCCccchHHHHHHH
Confidence 8765 344433322100 0 00111336999999888765432100 0 1
Q ss_pred C-CC-ccEEEEecchhhhhH
Q 017196 195 L-EH-LCYLVVDETDRLLRE 212 (375)
Q Consensus 195 ~-~~-~~~vIiDE~h~l~~~ 212 (375)
+ .+ -.+||+||||..-+.
T Consensus 168 ~g~dfdgvivfDEcH~akn~ 187 (303)
T PF13872_consen 168 CGEDFDGVIVFDECHKAKNL 187 (303)
T ss_pred HhcCCCceEEeccchhcCCC
Confidence 1 12 239999999988543
No 165
>KOG1802 consensus RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification]
Probab=98.25 E-value=8e-06 Score=80.38 Aligned_cols=153 Identities=20% Similarity=0.193 Sum_probs=101.9
Q ss_pred HHHHhCCCCCccHhhHHHHHHhhCCCCCCCCEEEECCCCCchHHHhHHHHHHHhhhcccCCceEEEEcccHHHHHHHHHH
Q 017196 41 VALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDV 120 (375)
Q Consensus 41 ~~l~~~g~~~~~~~Q~~~~~~~~~~~~~~~~~ii~a~TGsGKTl~~~l~il~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~ 120 (375)
+.+...|+.+++.-|..|..+.+ ...-.+|++|.|||||.+-+-.+++.+.... .++|+++|+.--++|+...
T Consensus 401 ~~~s~~~lpkLN~SQ~~AV~~VL----~rplsLIQGPPGTGKTvtsa~IVyhl~~~~~---~~VLvcApSNiAVDqLaeK 473 (935)
T KOG1802|consen 401 RRFSVPNLPKLNASQSNAVKHVL----QRPLSLIQGPPGTGKTVTSATIVYHLARQHA---GPVLVCAPSNIAVDQLAEK 473 (935)
T ss_pred hhhcCCCchhhchHHHHHHHHHH----cCCceeeecCCCCCceehhHHHHHHHHHhcC---CceEEEcccchhHHHHHHH
Confidence 35666788899999999998887 4556799999999999987776777776642 3699999999999999998
Q ss_pred HHHhccccCceEEEeecCCchH-------------------HHHHHHhhcCccccCccCCchhHH--------HhhcCCC
Q 017196 121 FAAIAPAVGLSVGLAVGQSSIA-------------------DEISELIKRPKLEAGICYDPEDVL--------QELQSAV 173 (375)
Q Consensus 121 ~~~~~~~~~~~v~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~ 173 (375)
+.+- |++|..+...+.-. .++..+.+..+-..+.+...+.-. +.+-...
T Consensus 474 Ih~t----gLKVvRl~aksRE~~~S~vs~L~lh~~~~~~~~pELq~l~klkde~gelS~sD~~k~~~lk~~~e~ell~~A 549 (935)
T KOG1802|consen 474 IHKT----GLKVVRLCAKSREDIESDVSFLSLHEQLRNMDKPELQKLLKLKDEGGELSSSDEKKYRKLKRAAEKELLNQA 549 (935)
T ss_pred HHhc----CceEeeeehhhhhhccCCccHHHHHHHHhccCcHHHHHHHhhhhhcccccchhhHHHHHHHHHHHHHHHhhc
Confidence 8865 68888877652111 122222222222222333222211 2344578
Q ss_pred cEEEeCcHHHHHHHhhcCCCCCCCccEEEEecchhh
Q 017196 174 DILVATPGRLMDHINATRGFTLEHLCYLVVDETDRL 209 (375)
Q Consensus 174 ~IiV~Tp~~l~~~l~~~~~~~~~~~~~vIiDE~h~l 209 (375)
+||.||.-..-+ +.+....+..|+|||+-+-
T Consensus 550 dVIccTcv~Agd-----~rl~~~kfr~VLiDEaTQa 580 (935)
T KOG1802|consen 550 DVICCTCVGAGD-----RRLSKFKFRTVLIDEATQA 580 (935)
T ss_pred CEEEEecccccc-----hhhccccccEEEEeccccc
Confidence 999999543211 2244456779999998765
No 166
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=98.19 E-value=3.8e-06 Score=73.08 Aligned_cols=60 Identities=15% Similarity=0.196 Sum_probs=40.9
Q ss_pred CCCccHhhHHHHHHhhCCCCCCCCEEEECCCCCchHHHhHHHHHHHhhhcccCCceEEEEcccHHH
Q 017196 48 ISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDL 113 (375)
Q Consensus 48 ~~~~~~~Q~~~~~~~~~~~~~~~~~ii~a~TGsGKTl~~~l~il~~l~~~~~~~~~~lil~Pt~~L 113 (375)
+...+..|..+++.+. +..-+++.+|.|||||+.++-.+++.+..+ ...+++|+-|..+.
T Consensus 2 I~p~~~~Q~~~~~al~----~~~~v~~~G~AGTGKT~LA~a~Al~~v~~g--~~~kiii~Rp~v~~ 61 (205)
T PF02562_consen 2 IKPKNEEQKFALDALL----NNDLVIVNGPAGTGKTFLALAAALELVKEG--EYDKIIITRPPVEA 61 (205)
T ss_dssp ----SHHHHHHHHHHH----H-SEEEEE--TTSSTTHHHHHHHHHHHHTT--S-SEEEEEE-S--T
T ss_pred ccCCCHHHHHHHHHHH----hCCeEEEECCCCCcHHHHHHHHHHHHHHhC--CCcEEEEEecCCCC
Confidence 4567889999988777 456788999999999999998898888774 33478888888753
No 167
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=98.10 E-value=1.3e-05 Score=69.88 Aligned_cols=64 Identities=20% Similarity=0.260 Sum_probs=44.0
Q ss_pred CccHhhHHHHHHhhCCCCCC-CCEEEECCCCCchHHHhHHHHHHHhhhcccCCceEEEEcccHHHHHHHHHH
Q 017196 50 SLFPVQVAVWQETIGPGLFE-RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDV 120 (375)
Q Consensus 50 ~~~~~Q~~~~~~~~~~~~~~-~~~ii~a~TGsGKTl~~~l~il~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~ 120 (375)
++++-|.+|+..++. ++ +-.+|.++-|||||.+ +-.+...+... +.++++++||...+..+.+.
T Consensus 1 ~L~~~Q~~a~~~~l~---~~~~~~~l~G~aGtGKT~~-l~~~~~~~~~~---g~~v~~~apT~~Aa~~L~~~ 65 (196)
T PF13604_consen 1 TLNEEQREAVRAILT---SGDRVSVLQGPAGTGKTTL-LKALAEALEAA---GKRVIGLAPTNKAAKELREK 65 (196)
T ss_dssp -S-HHHHHHHHHHHH---CTCSEEEEEESTTSTHHHH-HHHHHHHHHHT---T--EEEEESSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHh---cCCeEEEEEECCCCCHHHH-HHHHHHHHHhC---CCeEEEECCcHHHHHHHHHh
Confidence 478899999988874 33 4477889999999975 33344444332 35799999999888776555
No 168
>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length. There are two conserved sequence motifs: LLE and NMG.
Probab=98.10 E-value=4.8e-05 Score=66.92 Aligned_cols=149 Identities=21% Similarity=0.281 Sum_probs=92.3
Q ss_pred CCCCCccHhhHHHHHHhhCCCCCCCCEEEECCCCCchHHHhHHHHHHHhhhcccCCceEEEEcccHHHHHHHHHHHHH-h
Q 017196 46 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAA-I 124 (375)
Q Consensus 46 ~g~~~~~~~Q~~~~~~~~~~~~~~~~~ii~a~TGsGKTl~~~l~il~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~-~ 124 (375)
.++ ..++.|.+....++.. .+|.|.+.+.-+|.|||.+ ++|++.....++. .-+.+++| .+|.+|..+.++. +
T Consensus 20 ~~i-liR~~Q~~ia~~mi~~-~~~~n~v~QlnMGeGKTsV-I~Pmla~~LAdg~--~LvrviVp-k~Ll~q~~~~L~~~l 93 (229)
T PF12340_consen 20 SNI-LIRPVQVEIAREMISP-PSGKNSVMQLNMGEGKTSV-IVPMLALALADGS--RLVRVIVP-KALLEQMRQMLRSRL 93 (229)
T ss_pred cCc-eeeHHHHHHHHHHhCC-CCCCCeEeeecccCCccch-HHHHHHHHHcCCC--cEEEEEcC-HHHHHHHHHHHHHHH
Confidence 455 8999999999998864 5789999999999999987 6788877776532 24666777 5799999998874 4
Q ss_pred ccccCceEEEee--cCCchHHHHHHHhhcCccccCccCCchhHHHhhcCCCcEEEeCcHHHHHHHhhc------CCC---
Q 017196 125 APAVGLSVGLAV--GQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINAT------RGF--- 193 (375)
Q Consensus 125 ~~~~~~~v~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiV~Tp~~l~~~l~~~------~~~--- 193 (375)
+.-.+-++..+. -....+......+ ....+.......|+++||+.+.++.-.. +..
T Consensus 94 g~l~~r~i~~lpFsR~~~~~~~~~~~~-------------~~l~~~~~~~~gill~~PEhilSf~L~~le~l~~~~~~~~ 160 (229)
T PF12340_consen 94 GGLLNRRIYHLPFSRSTPLTPETLEKI-------------RQLLEECMRSGGILLATPEHILSFKLKGLERLQDGKPEEA 160 (229)
T ss_pred HHHhCCeeEEecccCCCCCCHHHHHHH-------------HHHHHHHHHcCCEEEeChHHHHHHHHHHHHHHHhcCHHHH
Confidence 433343443332 1221111100000 0111223345579999999887643210 000
Q ss_pred --------CCCCccEEEEecchhhhhHh
Q 017196 194 --------TLEHLCYLVVDETDRLLREA 213 (375)
Q Consensus 194 --------~~~~~~~vIiDE~h~l~~~~ 213 (375)
++....-=|+||+|..++..
T Consensus 161 ~~l~~~q~~l~~~~rdilDEsDe~L~~k 188 (229)
T PF12340_consen 161 RELLKIQKWLDEHSRDILDESDEILSVK 188 (229)
T ss_pred HHHHHHHHHHHhcCCeEeECchhccCcc
Confidence 12334456999999886543
No 169
>KOG1805 consensus DNA replication helicase [Replication, recombination and repair]
Probab=98.02 E-value=4.2e-05 Score=78.52 Aligned_cols=152 Identities=17% Similarity=0.163 Sum_probs=99.0
Q ss_pred CCHHHHHHHHhCCCCCccHhhHHHHHHhhCCCCCCCCEEEECCCCCchHHHhHHHHHHHhhhcccCCceEEEEcccHHHH
Q 017196 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLA 114 (375)
Q Consensus 35 l~~~i~~~l~~~g~~~~~~~Q~~~~~~~~~~~~~~~~~ii~a~TGsGKTl~~~l~il~~l~~~~~~~~~~lil~Pt~~L~ 114 (375)
+.|.+... -...++.-|++|+..++. .....+|.+-.|||||......+ ++.-. .+.++|+.+-|..-+
T Consensus 658 ~~p~~~~~----~~~~LN~dQr~A~~k~L~---aedy~LI~GMPGTGKTTtI~~LI--kiL~~--~gkkVLLtsyThsAV 726 (1100)
T KOG1805|consen 658 LIPKIKKI----ILLRLNNDQRQALLKALA---AEDYALILGMPGTGKTTTISLLI--KILVA--LGKKVLLTSYTHSAV 726 (1100)
T ss_pred cCchhhHH----HHhhcCHHHHHHHHHHHh---ccchheeecCCCCCchhhHHHHH--HHHHH--cCCeEEEEehhhHHH
Confidence 45555443 234788899999876664 45567888999999998643322 22222 234699999999888
Q ss_pred HHHHHHHHHhccccCceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcCCCcEEEeCcHHHHHHHhhcCCCC
Q 017196 115 LQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFT 194 (375)
Q Consensus 115 ~Q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiV~Tp~~l~~~l~~~~~~~ 194 (375)
+-+...++.+ ++.+..+..+....+..+++.-.. +-+...-+..+...+...|+.+|.-.+.+.+ |.
T Consensus 727 DNILiKL~~~----~i~~lRLG~~~kih~~v~e~~~~~----~~s~ks~~~l~~~~~~~~IVa~TClgi~~pl-----f~ 793 (1100)
T KOG1805|consen 727 DNILIKLKGF----GIYILRLGSEEKIHPDVEEFTLTN----ETSEKSYADLKKFLDQTSIVACTCLGINHPL-----FV 793 (1100)
T ss_pred HHHHHHHhcc----CcceeecCCccccchHHHHHhccc----ccchhhHHHHHHHhCCCcEEEEEccCCCchh-----hh
Confidence 7787777755 667777777777777666544211 1111122233445567789999954444333 44
Q ss_pred CCCccEEEEecchhhh
Q 017196 195 LEHLCYLVVDETDRLL 210 (375)
Q Consensus 195 ~~~~~~vIiDE~h~l~ 210 (375)
.++++++|||||-++.
T Consensus 794 ~R~FD~cIiDEASQI~ 809 (1100)
T KOG1805|consen 794 NRQFDYCIIDEASQIL 809 (1100)
T ss_pred ccccCEEEEccccccc
Confidence 5678899999999884
No 170
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=98.01 E-value=1.3e-05 Score=83.48 Aligned_cols=128 Identities=21% Similarity=0.226 Sum_probs=90.6
Q ss_pred CccHhhHHHHHHhhCCCCCCCCEEEECCCCCchHHHhHHHHHHHhhhcccCCceEEEEcccHHHHHHHHHHHHHhccccC
Q 017196 50 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVG 129 (375)
Q Consensus 50 ~~~~~Q~~~~~~~~~~~~~~~~~ii~a~TGsGKTl~~~l~il~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~ 129 (375)
.|+++|... .+.-++.-|..+.||-||||++.+|++.....+. .+-+++.+-.||..=...+..+....|
T Consensus 169 ~~yDVQliG------givLh~G~IAEM~TGEGKTLvAtlp~yLnAL~Gk----gVHvVTVNDYLA~RDaewmgply~fLG 238 (1112)
T PRK12901 169 VHYDVQLIG------GVVLHQGKIAEMATGEGKTLVATLPVYLNALTGN----GVHVVTVNDYLAKRDSEWMGPLYEFHG 238 (1112)
T ss_pred cccchHHhh------hhhhcCCceeeecCCCCchhHHHHHHHHHHHcCC----CcEEEEechhhhhccHHHHHHHHHHhC
Confidence 588888654 2224455699999999999999999998887763 377888888999876667777777779
Q ss_pred ceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcCCCcEEEeCcHHH-HHHHhhcCC-----CCCCCccEEEE
Q 017196 130 LSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRL-MDHINATRG-----FTLEHLCYLVV 203 (375)
Q Consensus 130 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiV~Tp~~l-~~~l~~~~~-----~~~~~~~~vIi 203 (375)
+.|.++......... ++..-.|||+-||..-| +++++..-. .-.+.+.+.||
T Consensus 239 Lsvg~i~~~~~~~~~----------------------rr~aY~~DItYgTn~EfGFDYLRDnm~~~~~~~vqR~~~fAIV 296 (1112)
T PRK12901 239 LSVDCIDKHQPNSEA----------------------RRKAYNADITYGTNNEFGFDYLRDNMAHSPEDLVQRKHNYAIV 296 (1112)
T ss_pred CceeecCCCCCCHHH----------------------HHHhCCCcceecCCCccccccchhccccchHhhhCcCCceeEe
Confidence 999988653211111 12345679999997544 444443211 22467889999
Q ss_pred ecchhh
Q 017196 204 DETDRL 209 (375)
Q Consensus 204 DE~h~l 209 (375)
||+|.+
T Consensus 297 DEvDSI 302 (1112)
T PRK12901 297 DEVDSV 302 (1112)
T ss_pred echhhh
Confidence 999998
No 171
>KOG2340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.00 E-value=7.8e-05 Score=71.85 Aligned_cols=287 Identities=15% Similarity=0.127 Sum_probs=147.3
Q ss_pred CCccHhhHHHHHHhhCCCCCCCCEEEEC-CCCCch--HHHhHHHHHHHhhhcc---------------------------
Q 017196 49 SSLFPVQVAVWQETIGPGLFERDLCINS-PTGSGK--TLSYALPIVQTLSNRA--------------------------- 98 (375)
Q Consensus 49 ~~~~~~Q~~~~~~~~~~~~~~~~~ii~a-~TGsGK--Tl~~~l~il~~l~~~~--------------------------- 98 (375)
.++++.|.+.+..+. +.+|++..- ..+.|+ +..|++-+++.+.+..
T Consensus 215 ~pltalQ~~L~~~m~----~YrDl~y~~~s~kn~~e~R~lYclH~lNHi~K~r~~IL~Nn~r~~Sqk~g~~~~~~frDQG 290 (698)
T KOG2340|consen 215 EPLTALQKELFKIMF----NYRDLLYPTRSQKNGEEYRSLYCLHALNHILKTRDLILGNNRRLASQKEGENPDESFRDQG 290 (698)
T ss_pred CcchHHHHHHHHHHH----hhhhhccccccccccchhhhhHHHHHHHHHHHHHHHHhcchHhhhhhhcCCCCchhhhhcC
Confidence 478999999765443 678877653 334555 5568888887763321
Q ss_pred cCCceEEEEcccHHHHHHHHHHHHHhcc-ccCceE--------EEeecC---------CchHHHHHHHhhcCccccCccC
Q 017196 99 VRCLRALVVLPTRDLALQVKDVFAAIAP-AVGLSV--------GLAVGQ---------SSIADEISELIKRPKLEAGICY 160 (375)
Q Consensus 99 ~~~~~~lil~Pt~~L~~Q~~~~~~~~~~-~~~~~v--------~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~ 160 (375)
...|++||+||+|+-|-.+.+.+..+.. ..+-+. ..-+++ ..+.+-...+.++.++...+..
T Consensus 291 ~tRpkVLivvpfRe~A~riVn~lis~l~G~~q~k~~V~Nk~RF~~eys~~te~~~~~~~kP~D~~~lf~GNtDD~FriGl 370 (698)
T KOG2340|consen 291 FTRPKVLIVVPFRESAYRIVNLLISLLSGDDQGKSEVWNKKRFEGEYSGPTELPPPRAKKPEDFEELFSGNTDDAFRIGL 370 (698)
T ss_pred CCCceEEEEecchHHHHHHHHHHHHHhcCccccchhhhhhhhhchhcCCCcccCCCCCCCchhHHHHhcCCCcchhhhhH
Confidence 1247899999999999998888877632 211000 000111 0000001111111111111111
Q ss_pred CchhHHHhhc---CCCcEEEeCcHHHHHHHhhcC----CCC-CCCccEEEEecchhhhhHhHHhHHHHHHHhhhcccccc
Q 017196 161 DPEDVLQELQ---SAVDILVATPGRLMDHINATR----GFT-LEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENR 232 (375)
Q Consensus 161 ~~~~~~~~~~---~~~~IiV~Tp~~l~~~l~~~~----~~~-~~~~~~vIiDE~h~l~~~~~~~~l~~i~~~l~~~~~~~ 232 (375)
.-..-.-++. ...||+||+|=-|.-.+.+.+ .++ ++.+.++|||.+|.++..++ +++..+++++...+..
T Consensus 371 ~ftkKtikLys~fy~SDIlVaSPLGLRmil~n~gdkkrd~dfLSSIEl~iIDQa~~~l~QNw-Ehl~~ifdHLn~~P~k- 448 (698)
T KOG2340|consen 371 AFTKKTIKLYSKFYKSDILVASPLGLRMILGNTGDKKRDFDFLSSIELLIIDQADIMLMQNW-EHLLHIFDHLNLQPSK- 448 (698)
T ss_pred HHHHHHHHHHhhhcccCeEEecchhhhhhhcCCCcccccchhhhhhhhhhhhhHHHHHHhhH-HHHHHHHHHhhcCccc-
Confidence 1000000111 257999999998887776422 122 67888999999999988775 5577788887664431
Q ss_pred cccccccccccccccccccccccccCCCCCCCCc--eeEEEEEEecCCCchhhhccccCCCe---EEe-------cCCcc
Q 017196 233 FSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPR--LVKMVLSATLTQDPNKLAQLDLHHPL---FLT-------TGETR 300 (375)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~q~i~~SATl~~~~~~~~~~~~~~~~---~i~-------~~~~~ 300 (375)
.-+ .++.--|+|+-....+ .|.++||+--...+..+......+.. ... +....
T Consensus 449 ----------~h~-----~DfSRVR~wyL~~qsr~~rQtl~Fs~y~~~~~nS~fn~~c~N~~Gkv~~~~~~~~gsi~~v~ 513 (698)
T KOG2340|consen 449 ----------QHD-----VDFSRVRMWYLDGQSRYFRQTLLFSRYSHPLFNSLFNQYCQNMAGKVKARNLQSGGSISNVG 513 (698)
T ss_pred ----------ccC-----CChhheehheeccHHHHHHHHHHHHhhccHHHHHHHHHhhhhhcceeeeccccCCCchhhcc
Confidence 001 1122223344333333 47788887655544444433332211 110 00011
Q ss_pred ccCcccceeEEEecc---CCCcHHHHHH-HHHhc---CCCeEEEEcCChhhHHHHHHHHHHhc
Q 017196 301 YKLPERLESYKLICE---SKLKPLYLVA-LLQSL---GEEKCIVFTSSVESTHRLCTLLNHFG 356 (375)
Q Consensus 301 ~~~~~~i~~~~~~~~---~~~k~~~l~~-ll~~~---~~~k~lIF~~s~~~a~~l~~~L~~~g 356 (375)
..+...++.+.+... .+.+...... ++-++ ..+-+|||.++--+--.+.+++++.+
T Consensus 514 ~~l~Qvf~ri~~~si~~~~D~RFkyFv~~ImPq~~k~t~s~~LiyIPSYfDFVRvRNy~K~e~ 576 (698)
T KOG2340|consen 514 IPLCQVFQRIEVKSIIETPDARFKYFVDKIMPQLIKRTESGILIYIPSYFDFVRVRNYMKKEE 576 (698)
T ss_pred chhhhhhhheeccCcccCchHHHHHHHHhhchhhcccccCceEEEecchhhHHHHHHHhhhhh
Confidence 111111222111111 1122222221 11122 34468999999999999999998543
No 172
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=97.98 E-value=3.9e-05 Score=78.53 Aligned_cols=79 Identities=20% Similarity=0.147 Sum_probs=57.6
Q ss_pred CCccHhhHHHHHHhhCCCCCCCCEEEECCCCCchHHHhHHHHHHHhhhcccCCceEEEEcccHHHHHHHHHHHHHhcccc
Q 017196 49 SSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAV 128 (375)
Q Consensus 49 ~~~~~~Q~~~~~~~~~~~~~~~~~ii~a~TGsGKTl~~~l~il~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~ 128 (375)
..+++.|.+|+..++. .....+|.+|.|||||.+..-.+.+.+.. +.++++++||..-++++...+...
T Consensus 156 ~~ln~~Q~~Av~~~l~---~~~~~lI~GpPGTGKT~t~~~ii~~~~~~----g~~VLv~a~sn~Avd~l~e~l~~~---- 224 (637)
T TIGR00376 156 PNLNESQKEAVSFALS---SKDLFLIHGPPGTGKTRTLVELIRQLVKR----GLRVLVTAPSNIAVDNLLERLALC---- 224 (637)
T ss_pred CCCCHHHHHHHHHHhc---CCCeEEEEcCCCCCHHHHHHHHHHHHHHc----CCCEEEEcCcHHHHHHHHHHHHhC----
Confidence 4679999999887663 33578999999999997654444444433 237999999999999988888753
Q ss_pred CceEEEeecC
Q 017196 129 GLSVGLAVGQ 138 (375)
Q Consensus 129 ~~~v~~~~~~ 138 (375)
++++..+...
T Consensus 225 ~~~vvRlg~~ 234 (637)
T TIGR00376 225 DQKIVRLGHP 234 (637)
T ss_pred CCcEEEeCCc
Confidence 4555555544
No 173
>KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=97.98 E-value=4.5e-05 Score=77.59 Aligned_cols=90 Identities=17% Similarity=0.148 Sum_probs=63.1
Q ss_pred CCCCCccHhhHHHHHHhhCCCCCCCCEEEECCCCCchHHHhHHHHHHHh---hhc---------c---------------
Q 017196 46 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL---SNR---------A--------------- 98 (375)
Q Consensus 46 ~g~~~~~~~Q~~~~~~~~~~~~~~~~~ii~a~TGsGKTl~~~l~il~~l---~~~---------~--------------- 98 (375)
+.| +|++.|......++..+...+++++.+|||||||++.+=..+.+. +.+ .
T Consensus 18 fP~-qpY~~Q~a~M~rvl~~L~~~q~~llESPTGTGKSLsLLCS~LAW~q~~k~~~~~~~~s~~~~~~~p~~~s~~~g~~ 96 (945)
T KOG1132|consen 18 FPF-QPYPTQLAFMTRVLSCLDRKQNGLLESPTGTGKSLSLLCSTLAWQQHLKSRKPKGKISERKAGFIPTQPSDSGGEK 96 (945)
T ss_pred ccC-CcchHHHHHHHHHHHHHHHhhhhhccCCCCCCccHHHHHHHHHHHHHhhccccccchhhhhccccCCCCccCCCCc
Confidence 445 789999999888888787889999999999999998654443333 200 0
Q ss_pred -----------cCCceEEEEcccHHHHHHHHHHHHHhccccCceEEEeecC
Q 017196 99 -----------VRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQ 138 (375)
Q Consensus 99 -----------~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~~~ 138 (375)
...|+++|-.-|..-..|+.+++++..= .++...+.+.
T Consensus 97 s~e~~e~~~~~~~ipkIyyaSRTHsQltQvvrElrrT~Y--~vkmtVLgSR 145 (945)
T KOG1132|consen 97 SEEAGEPIACYTGIPKIYYASRTHSQLTQVVRELRRTGY--RVKMTVLGSR 145 (945)
T ss_pred hhhhcCccccccCCceEEEecchHHHHHHHHHHHhhcCC--CCceEEeecc
Confidence 0135678888888877788888876543 2555555544
No 174
>KOG1803 consensus DNA helicase [Replication, recombination and repair]
Probab=97.95 E-value=3e-05 Score=75.99 Aligned_cols=66 Identities=26% Similarity=0.268 Sum_probs=48.9
Q ss_pred CCccHhhHHHHHHhhCCCCCCCCEEEECCCCCchHHHhHHHHHHHhhhcccCCceEEEEcccHHHHHHHHHHH
Q 017196 49 SSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVF 121 (375)
Q Consensus 49 ~~~~~~Q~~~~~~~~~~~~~~~~~ii~a~TGsGKTl~~~l~il~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~~ 121 (375)
..+.+-|.+|....+. ...-.+|.+|.|||||.+...-+.+.++.. .++|+++||..-++-+...+
T Consensus 184 ~~ln~SQk~Av~~~~~---~k~l~~I~GPPGTGKT~TlvEiI~qlvk~~----k~VLVcaPSn~AVdNiverl 249 (649)
T KOG1803|consen 184 KNLNSSQKAAVSFAIN---NKDLLIIHGPPGTGKTRTLVEIISQLVKQK----KRVLVCAPSNVAVDNIVERL 249 (649)
T ss_pred ccccHHHHHHHHHHhc---cCCceEeeCCCCCCceeeHHHHHHHHHHcC----CeEEEEcCchHHHHHHHHHh
Confidence 3678889998876653 223468889999999998766555555544 37999999999877777653
No 175
>PRK10536 hypothetical protein; Provisional
Probab=97.87 E-value=0.00021 Score=64.12 Aligned_cols=63 Identities=17% Similarity=0.134 Sum_probs=44.1
Q ss_pred HhCCCCCccHhhHHHHHHhhCCCCCCCCEEEECCCCCchHHHhHHHHHHHhhhcccCCceEEEEcccHH
Q 017196 44 QNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRD 112 (375)
Q Consensus 44 ~~~g~~~~~~~Q~~~~~~~~~~~~~~~~~ii~a~TGsGKTl~~~l~il~~l~~~~~~~~~~lil~Pt~~ 112 (375)
.-.++...+..|...+..+. ++..+++.+++|||||+.+.-.+++.+... ...+++|.=|+.+
T Consensus 53 ~~~~i~p~n~~Q~~~l~al~----~~~lV~i~G~aGTGKT~La~a~a~~~l~~~--~~~kIiI~RP~v~ 115 (262)
T PRK10536 53 DTSPILARNEAQAHYLKAIE----SKQLIFATGEAGCGKTWISAAKAAEALIHK--DVDRIIVTRPVLQ 115 (262)
T ss_pred CCccccCCCHHHHHHHHHHh----cCCeEEEECCCCCCHHHHHHHHHHHHHhcC--CeeEEEEeCCCCC
Confidence 33567777888988776544 456889999999999998766666666443 2335666666654
No 176
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=97.85 E-value=6.2e-05 Score=71.88 Aligned_cols=96 Identities=17% Similarity=0.206 Sum_probs=60.6
Q ss_pred CEEEECCCCCchHHHhHHHHHHHhhhcccCCceEEEEcccHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHHhh
Q 017196 71 DLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIK 150 (375)
Q Consensus 71 ~~ii~a~TGsGKTl~~~l~il~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 150 (375)
-++|.+..|||||+.++- ++..+.. ...+..+++++++..|...+...+..-..
T Consensus 3 v~~I~G~aGTGKTvla~~-l~~~l~~-~~~~~~~~~l~~n~~l~~~l~~~l~~~~~------------------------ 56 (352)
T PF09848_consen 3 VILITGGAGTGKTVLALN-LAKELQN-SEEGKKVLYLCGNHPLRNKLREQLAKKYN------------------------ 56 (352)
T ss_pred EEEEEecCCcCHHHHHHH-HHHHhhc-cccCCceEEEEecchHHHHHHHHHhhhcc------------------------
Confidence 368889999999987543 4444411 12344799999999999988888765320
Q ss_pred cCccccCccCCchhHHHhhcCCCcEEEeCcHHHHHHHhhcCCCCCCCccEEEEecchhhhhH
Q 017196 151 RPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLRE 212 (375)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~IiV~Tp~~l~~~l~~~~~~~~~~~~~vIiDE~h~l~~~ 212 (375)
.......+..+..+...+.. ........++|||||||.+...
T Consensus 57 -------------------~~~~~~~~~~~~~~i~~~~~-~~~~~~~~DviivDEAqrl~~~ 98 (352)
T PF09848_consen 57 -------------------PKLKKSDFRKPTSFINNYSE-SDKEKNKYDVIIVDEAQRLRTK 98 (352)
T ss_pred -------------------cchhhhhhhhhHHHHhhccc-ccccCCcCCEEEEehhHhhhhc
Confidence 00112333344444333321 1234568899999999999773
No 177
>KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription]
Probab=97.85 E-value=0.00015 Score=74.22 Aligned_cols=124 Identities=16% Similarity=0.125 Sum_probs=74.9
Q ss_pred CCCCEEEECCCCCchHHHhHHHHHHHhh-hcccCCceEEEEcccHHHHHHHHHHHHHhcccc----CceEEEeecCCchH
Q 017196 68 FERDLCINSPTGSGKTLSYALPIVQTLS-NRAVRCLRALVVLPTRDLALQVKDVFAAIAPAV----GLSVGLAVGQSSIA 142 (375)
Q Consensus 68 ~~~~~ii~a~TGsGKTl~~~l~il~~l~-~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~----~~~v~~~~~~~~~~ 142 (375)
.|..+|+.=.+|.|||+. ++..++.+. +......+|||++|-..+. -|.+.|.+|.+.+ .+.|..+..-....
T Consensus 695 ~GsGcILAHcMGLGKTlQ-VvtflhTvL~c~klg~ktaLvV~PlNt~~-NW~~EFekWm~~~e~~~~leV~eL~~vkr~e 772 (1567)
T KOG1015|consen 695 PGSGCILAHCMGLGKTLQ-VVTFLHTVLLCDKLGFKTALVVCPLNTAL-NWMNEFEKWMEGLEDDEKLEVSELATVKRPE 772 (1567)
T ss_pred CCcchHHHHhhcccceeh-hhHHHHHHHHhhccCCceEEEEcchHHHH-HHHHHHHHhcccccccccceeehhhhccChH
Confidence 466788889999999997 455555443 3334556899999987654 5999999998853 35565554443322
Q ss_pred HHHHHHhhcCccccCccCCchhHHHhhcCCCcEEEeCcHHHHHHHhhcCCCC-------------CCCccEEEEecchhh
Q 017196 143 DEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFT-------------LEHLCYLVVDETDRL 209 (375)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiV~Tp~~l~~~l~~~~~~~-------------~~~~~~vIiDE~h~l 209 (375)
..... + .++...+ .|.|.-++.+..+... +... -.-.++||.||+|.+
T Consensus 773 ~R~~~-L----------------~~W~~~g-gVmIiGYdmyRnLa~g-r~vk~rk~ke~f~k~lvdpGPD~vVCDE~HiL 833 (1567)
T KOG1015|consen 773 ERSYM-L----------------QRWQEDG-GVMIIGYDMYRNLAQG-RNVKSRKLKEIFNKALVDPGPDFVVCDEGHIL 833 (1567)
T ss_pred HHHHH-H----------------HHHHhcC-CEEEEehHHHHHHhcc-cchhhhHHHHHHHHhccCCCCCeEEecchhhh
Confidence 22111 0 1122233 5555555555444332 1111 133679999999977
Q ss_pred hhH
Q 017196 210 LRE 212 (375)
Q Consensus 210 ~~~ 212 (375)
-+.
T Consensus 834 KNe 836 (1567)
T KOG1015|consen 834 KNE 836 (1567)
T ss_pred ccc
Confidence 554
No 178
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=97.76 E-value=7.3e-05 Score=79.87 Aligned_cols=140 Identities=22% Similarity=0.188 Sum_probs=92.8
Q ss_pred CCccHhhHHHHHHhh-CCCCCCCCEEEECCCCCchHHHhHHHHHHHhhhcccCCceEEEEcccHHHHHHHHHHHHHhccc
Q 017196 49 SSLFPVQVAVWQETI-GPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPA 127 (375)
Q Consensus 49 ~~~~~~Q~~~~~~~~-~~~~~~~~~ii~a~TGsGKTl~~~l~il~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~ 127 (375)
..+.++|.+.++++. .....+.+.++...+|.|||+..+..+...........+.+++++|+ +++.+|.+.+.++.+.
T Consensus 337 ~~lr~yq~~g~~wl~~~l~~~~~~~ilaD~mglGKTiq~i~~l~~~~~~~~~~~~~~liv~p~-s~~~nw~~e~~k~~~~ 415 (866)
T COG0553 337 AELRPYQLEGVNWLSELLRSNLLGGILADDMGLGKTVQTIALLLSLLESIKVYLGPALIVVPA-SLLSNWKREFEKFAPD 415 (866)
T ss_pred hhhHHHHHHHHHHHHHHHHhccCCCcccccccchhHHHHHHHHHhhhhcccCCCCCeEEEecH-HHHHHHHHHHhhhCcc
Confidence 578999999988866 33345677899999999999875444443222222223579999998 5677899999988885
Q ss_pred cCceEEEeecCCch----HHHHHHHhhcCccccCccCCchhHHHhhcC----CCcEEEeCcHHHHHHHhhcCCCCCCCcc
Q 017196 128 VGLSVGLAVGQSSI----ADEISELIKRPKLEAGICYDPEDVLQELQS----AVDILVATPGRLMDHINATRGFTLEHLC 199 (375)
Q Consensus 128 ~~~~v~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~IiV~Tp~~l~~~l~~~~~~~~~~~~ 199 (375)
... +...+|.... ..... ..... ..+++++|.+.+.........+.-..++
T Consensus 416 ~~~-~~~~~g~~~~~~~~~~~~~--------------------~~~~~~~~~~~~v~itty~~l~~~~~~~~~l~~~~~~ 474 (866)
T COG0553 416 LRL-VLVYHGEKSELDKKREALR--------------------DLLKLHLVIIFDVVITTYELLRRFLVDHGGLKKIEWD 474 (866)
T ss_pred ccc-eeeeeCCcccccHHHHHHH--------------------HHhhhcccceeeEEechHHHHHHhhhhHHHHhhceee
Confidence 432 6666665531 11111 11111 2699999999887732111224456788
Q ss_pred EEEEecchhhh
Q 017196 200 YLVVDETDRLL 210 (375)
Q Consensus 200 ~vIiDE~h~l~ 210 (375)
.+|+||+|.+-
T Consensus 475 ~~v~DEa~~ik 485 (866)
T COG0553 475 RVVLDEAHRIK 485 (866)
T ss_pred eeehhhHHHHh
Confidence 99999999983
No 179
>PF13245 AAA_19: Part of AAA domain
Probab=97.73 E-value=0.00014 Score=52.94 Aligned_cols=53 Identities=32% Similarity=0.454 Sum_probs=38.2
Q ss_pred CCCEEEECCCCCchHHHhHHHHHHHhhhcccCCceEEEEcccHHHHHHHHHHH
Q 017196 69 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVF 121 (375)
Q Consensus 69 ~~~~ii~a~TGsGKTl~~~l~il~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~~ 121 (375)
+.-++|.+|.|||||...+-.+...+......+.++++++||+..++++.+.+
T Consensus 10 ~~~~vv~g~pGtGKT~~~~~~i~~l~~~~~~~~~~vlv~a~t~~aa~~l~~rl 62 (76)
T PF13245_consen 10 SPLFVVQGPPGTGKTTTLAARIAELLAARADPGKRVLVLAPTRAAADELRERL 62 (76)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEECCCHHHHHHHHHHH
Confidence 34466699999999976555455554321112558999999999999888877
No 180
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=97.69 E-value=0.00056 Score=69.55 Aligned_cols=68 Identities=18% Similarity=0.164 Sum_probs=46.9
Q ss_pred cHhhHHHHHHhhCCCCCCCCEEEECCCCCchHHHhHHHHHHHhhh-cccCCceEEEEcccHHHHHHHHHHHHHh
Q 017196 52 FPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSN-RAVRCLRALVVLPTRDLALQVKDVFAAI 124 (375)
Q Consensus 52 ~~~Q~~~~~~~~~~~~~~~~~ii~a~TGsGKTl~~~l~il~~l~~-~~~~~~~~lil~Pt~~L~~Q~~~~~~~~ 124 (375)
.++|+.|....+ .++-.+|.++.|||||.+. -.++..+.+ ...+..++++++||..-|..+.+.+...
T Consensus 154 ~d~Qk~Av~~a~----~~~~~vItGgpGTGKTt~v-~~ll~~l~~~~~~~~~~i~l~APTgkAA~rL~e~~~~~ 222 (615)
T PRK10875 154 VDWQKVAAAVAL----TRRISVISGGPGTGKTTTV-AKLLAALIQLADGERCRIRLAAPTGKAAARLTESLGKA 222 (615)
T ss_pred CHHHHHHHHHHh----cCCeEEEEeCCCCCHHHHH-HHHHHHHHHhcCCCCcEEEEECCcHHHHHHHHHHHHhh
Confidence 579999975444 5677999999999999763 223333322 1123347889999999888777766543
No 181
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification]
Probab=97.61 E-value=9.4e-05 Score=71.73 Aligned_cols=98 Identities=22% Similarity=0.209 Sum_probs=66.9
Q ss_pred EEEECCCCCchHHHhHHHHHHHhhhcccCCceEEEEcccHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHHhhc
Q 017196 72 LCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKR 151 (375)
Q Consensus 72 ~ii~a~TGsGKTl~~~l~il~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 151 (375)
++=++||.||||.- +++++...+ ..++.-|.+-||.++++.+.+. |+.+.+++|........
T Consensus 194 i~H~GPTNSGKTy~----ALqrl~~ak----sGvycGPLrLLA~EV~~r~na~----gipCdL~TGeE~~~~~~------ 255 (700)
T KOG0953|consen 194 IMHVGPTNSGKTYR----ALQRLKSAK----SGVYCGPLRLLAHEVYDRLNAL----GIPCDLLTGEERRFVLD------ 255 (700)
T ss_pred EEEeCCCCCchhHH----HHHHHhhhc----cceecchHHHHHHHHHHHhhhc----CCCccccccceeeecCC------
Confidence 34458999999975 466666652 4899999999999999999877 67777777764321110
Q ss_pred CccccCccCCchhHHHhhcCCCcEEEeCcHHHHHHHhhcCCCCCCCccEEEEecchhhhhHh
Q 017196 152 PKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREA 213 (375)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~IiV~Tp~~l~~~l~~~~~~~~~~~~~vIiDE~h~l~~~~ 213 (375)
-...++.+-||-++. .- -..+++.||||+++|-+..
T Consensus 256 -----------------~~~~a~hvScTVEM~----sv-----~~~yeVAViDEIQmm~Dp~ 291 (700)
T KOG0953|consen 256 -----------------NGNPAQHVSCTVEMV----SV-----NTPYEVAVIDEIQMMRDPS 291 (700)
T ss_pred -----------------CCCcccceEEEEEEe----ec-----CCceEEEEehhHHhhcCcc
Confidence 011256677775532 11 1346699999999986654
No 182
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=97.59 E-value=0.00078 Score=68.30 Aligned_cols=66 Identities=18% Similarity=0.167 Sum_probs=45.6
Q ss_pred HhhHHHHHHhhCCCCCCCCEEEECCCCCchHHHhHHHHHHHhhhcc--cCCceEEEEcccHHHHHHHHHHHHH
Q 017196 53 PVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRA--VRCLRALVVLPTRDLALQVKDVFAA 123 (375)
Q Consensus 53 ~~Q~~~~~~~~~~~~~~~~~ii~a~TGsGKTl~~~l~il~~l~~~~--~~~~~~lil~Pt~~L~~Q~~~~~~~ 123 (375)
.+|+.|+...+ .++..+|.++.|||||.+. ..++..+.... ..+.++++++||..-+..+.+.+..
T Consensus 148 ~~Qk~A~~~al----~~~~~vitGgpGTGKTt~v-~~ll~~l~~~~~~~~~~~I~l~APTGkAA~rL~e~~~~ 215 (586)
T TIGR01447 148 NWQKVAVALAL----KSNFSLITGGPGTGKTTTV-ARLLLALVKQSPKQGKLRIALAAPTGKAAARLAESLRK 215 (586)
T ss_pred HHHHHHHHHHh----hCCeEEEEcCCCCCHHHHH-HHHHHHHHHhccccCCCcEEEECCcHHHHHHHHHHHHh
Confidence 68888876655 4678999999999999863 22333332211 1125799999999888877776654
No 183
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=97.58 E-value=0.001 Score=69.27 Aligned_cols=67 Identities=18% Similarity=0.175 Sum_probs=46.7
Q ss_pred HhCCCCCccHhhHHHHHHhhCCCCCCCCEEEECCCCCchHHHhHHHHHHHhhhcccCCceEEEEcccHHHHHHH
Q 017196 44 QNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQV 117 (375)
Q Consensus 44 ~~~g~~~~~~~Q~~~~~~~~~~~~~~~~~ii~a~TGsGKTl~~~l~il~~l~~~~~~~~~~lil~Pt~~L~~Q~ 117 (375)
...++ .+++-|.+|+..+. .++.++|.++.|||||... -.++..+.... +...+++++||..-+..+
T Consensus 318 ~~~~~-~l~~~Q~~Ai~~~~----~~~~~iitGgpGTGKTt~l-~~i~~~~~~~~-~~~~v~l~ApTg~AA~~L 384 (720)
T TIGR01448 318 KKLRK-GLSEEQKQALDTAI----QHKVVILTGGPGTGKTTIT-RAIIELAEELG-GLLPVGLAAPTGRAAKRL 384 (720)
T ss_pred HhcCC-CCCHHHHHHHHHHH----hCCeEEEECCCCCCHHHHH-HHHHHHHHHcC-CCceEEEEeCchHHHHHH
Confidence 33564 89999999988775 4668999999999999753 33344343321 114688899998776643
No 184
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=97.57 E-value=0.0017 Score=68.00 Aligned_cols=61 Identities=13% Similarity=0.049 Sum_probs=43.8
Q ss_pred CccHhhHHHHHHhhCCCCCCCCEEEECCCCCchHHHhHHHHHHHhhhcccCCceEEEEcccHHHHHHH
Q 017196 50 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQV 117 (375)
Q Consensus 50 ~~~~~Q~~~~~~~~~~~~~~~~~ii~a~TGsGKTl~~~l~il~~l~~~~~~~~~~lil~Pt~~L~~Q~ 117 (375)
.+++-|.+|+..++. +++-++|.++.|||||.. +-.+...+.. .+.++++++||..-+..+
T Consensus 352 ~Ls~~Q~~Av~~i~~---s~~~~il~G~aGTGKTtl-l~~i~~~~~~---~g~~V~~~ApTg~Aa~~L 412 (744)
T TIGR02768 352 RLSEEQYEAVRHVTG---SGDIAVVVGRAGTGKSTM-LKAAREAWEA---AGYRVIGAALSGKAAEGL 412 (744)
T ss_pred CCCHHHHHHHHHHhc---CCCEEEEEecCCCCHHHH-HHHHHHHHHh---CCCeEEEEeCcHHHHHHH
Confidence 789999999988763 345689999999999975 2333333333 234799999997765544
No 185
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=97.52 E-value=0.0015 Score=69.70 Aligned_cols=65 Identities=11% Similarity=-0.070 Sum_probs=45.0
Q ss_pred hCCCCCccHhhHHHHHHhhCCCCCCCCEEEECCCCCchHHHhHHHHHHHhhhcccCCceEEEEcccHHHHHHH
Q 017196 45 NMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQV 117 (375)
Q Consensus 45 ~~g~~~~~~~Q~~~~~~~~~~~~~~~~~ii~a~TGsGKTl~~~l~il~~l~~~~~~~~~~lil~Pt~~L~~Q~ 117 (375)
..|+ .+++-|.+|+..++. .+.-++|.++.|||||.. +-.+...+.. .+.+++.++||-.-+..+
T Consensus 342 ~~g~-~Ls~eQr~Av~~il~---s~~v~vv~G~AGTGKTT~-l~~~~~~~e~---~G~~V~~~ApTGkAA~~L 406 (988)
T PRK13889 342 ARGL-VLSGEQADALAHVTD---GRDLGVVVGYAGTGKSAM-LGVAREAWEA---AGYEVRGAALSGIAAENL 406 (988)
T ss_pred hcCC-CCCHHHHHHHHHHhc---CCCeEEEEeCCCCCHHHH-HHHHHHHHHH---cCCeEEEecCcHHHHHHH
Confidence 3454 899999999988763 233578999999999975 3333333332 245799999998755433
No 186
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=97.44 E-value=0.00041 Score=64.68 Aligned_cols=70 Identities=26% Similarity=0.223 Sum_probs=53.6
Q ss_pred ccHhhHHHHHHhhCCCCCCCCEEEECCCCCchHHHhHHHHHHHhhhcccCCceEEEEcccHHHHHHHHHHHHHhcc
Q 017196 51 LFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAP 126 (375)
Q Consensus 51 ~~~~Q~~~~~~~~~~~~~~~~~ii~a~TGsGKTl~~~l~il~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~ 126 (375)
+++-|.+++.. ..+.++|.|+-|||||.+.+--+...+........+++++++|+..+.++...+.....
T Consensus 1 l~~eQ~~~i~~------~~~~~lV~a~AGSGKT~~l~~ri~~ll~~~~~~~~~Il~lTft~~aa~e~~~ri~~~l~ 70 (315)
T PF00580_consen 1 LTDEQRRIIRS------TEGPLLVNAGAGSGKTTTLLERIAYLLYEGGVPPERILVLTFTNAAAQEMRERIRELLE 70 (315)
T ss_dssp S-HHHHHHHHS-------SSEEEEEE-TTSSHHHHHHHHHHHHHHTSSSTGGGEEEEESSHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHhC------CCCCEEEEeCCCCCchHHHHHHHHHhhccccCChHHheecccCHHHHHHHHHHHHHhcC
Confidence 46778887543 36789999999999999876666666666545566899999999999999999987654
No 187
>PRK06526 transposase; Provisional
Probab=97.43 E-value=0.0019 Score=58.66 Aligned_cols=50 Identities=20% Similarity=0.263 Sum_probs=31.3
Q ss_pred CccccCCCCCCCCCCHHHHHHHHhCCCCCccHhhHHHHHHhhCCCCCCCCEEEECCCCCchHHHhHH
Q 017196 22 SLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYAL 88 (375)
Q Consensus 22 ~~~~~~~~~~~~~l~~~i~~~l~~~g~~~~~~~Q~~~~~~~~~~~~~~~~~ii~a~TGsGKTl~~~l 88 (375)
..++++.++..+.++......|....| +. .+.++++.+|+|+|||..+.-
T Consensus 68 ~~le~fd~~~~~~~~~~~~~~l~~~~f--------------i~---~~~nlll~Gp~GtGKThLa~a 117 (254)
T PRK06526 68 KSLEEFDFDHQRSLKRDTIAHLGTLDF--------------VT---GKENVVFLGPPGTGKTHLAIG 117 (254)
T ss_pred CChhhccCccCCCcchHHHHHHhcCch--------------hh---cCceEEEEeCCCCchHHHHHH
Confidence 566666655544455544444432222 22 567899999999999986543
No 188
>COG3587 Restriction endonuclease [Defense mechanisms]
Probab=97.42 E-value=0.00049 Score=70.09 Aligned_cols=48 Identities=21% Similarity=0.280 Sum_probs=36.4
Q ss_pred CCEEEECCCCCchHHHhHHHHHHHhhhcccCCceEEEEcccHHHHHHHHH
Q 017196 70 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKD 119 (375)
Q Consensus 70 ~~~ii~a~TGsGKTl~~~l~il~~l~~~~~~~~~~lil~Pt~~L~~Q~~~ 119 (375)
-|+=|.+.||||||.+|+-.+++.-+.- .-.+-||+|||.+.-+-++.
T Consensus 75 lNiDI~METGTGKTy~YlrtmfeLhk~Y--G~~KFIivVPs~AIkeGv~~ 122 (985)
T COG3587 75 LNIDILMETGTGKTYTYLRTMFELHKKY--GLFKFIIVVPSLAIKEGVFL 122 (985)
T ss_pred ceeeEEEecCCCceeeHHHHHHHHHHHh--CceeEEEEeccHHHHhhhHH
Confidence 4678889999999999988777655543 33478999999987654333
No 189
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.34 E-value=0.0028 Score=60.92 Aligned_cols=22 Identities=36% Similarity=0.449 Sum_probs=17.3
Q ss_pred CCCEEEECCCCCchHHHhHHHH
Q 017196 69 ERDLCINSPTGSGKTLSYALPI 90 (375)
Q Consensus 69 ~~~~ii~a~TGsGKTl~~~l~i 90 (375)
++.+++.+|||+|||.+..--+
T Consensus 174 ~~vi~lvGptGvGKTTT~aKLA 195 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIAKLA 195 (388)
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 3568899999999998865433
No 190
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=97.33 E-value=0.0027 Score=51.00 Aligned_cols=19 Identities=47% Similarity=0.594 Sum_probs=12.5
Q ss_pred CCCCEEEECCCCCchHHHh
Q 017196 68 FERDLCINSPTGSGKTLSY 86 (375)
Q Consensus 68 ~~~~~ii~a~TGsGKTl~~ 86 (375)
+++.++|.|++|+|||...
T Consensus 3 ~~~~~~i~G~~G~GKT~~~ 21 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLI 21 (131)
T ss_dssp ----EEEEE-TTSSHHHHH
T ss_pred CCcccEEEcCCCCCHHHHH
Confidence 4566899999999999864
No 191
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=97.23 E-value=0.0081 Score=64.68 Aligned_cols=75 Identities=13% Similarity=-0.025 Sum_probs=50.5
Q ss_pred CCHHHHHHHHhCCCCCccHhhHHHHHHhhCCCCCCCCEEEECCCCCchHHHhHHHHHHHhhhcccCCceEEEEcccHHHH
Q 017196 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLA 114 (375)
Q Consensus 35 l~~~i~~~l~~~g~~~~~~~Q~~~~~~~~~~~~~~~~~ii~a~TGsGKTl~~~l~il~~l~~~~~~~~~~lil~Pt~~L~ 114 (375)
+++.........++ .+++-|.+|+..+. ..++-++|.++-|||||.. +-.+...+.. .+.+++.++||..-+
T Consensus 367 v~~~~l~a~~~~~~-~Ls~eQ~~Av~~i~---~~~r~~~v~G~AGTGKTt~-l~~~~~~~e~---~G~~V~g~ApTgkAA 438 (1102)
T PRK13826 367 VREAVLAATFARHA-RLSDEQKTAIEHVA---GPARIAAVVGRAGAGKTTM-MKAAREAWEA---AGYRVVGGALAGKAA 438 (1102)
T ss_pred CCHHHHHHHHhcCC-CCCHHHHHHHHHHh---ccCCeEEEEeCCCCCHHHH-HHHHHHHHHH---cCCeEEEEcCcHHHH
Confidence 44444444444454 89999999988764 2456689999999999975 3334443333 334799999998766
Q ss_pred HHH
Q 017196 115 LQV 117 (375)
Q Consensus 115 ~Q~ 117 (375)
..+
T Consensus 439 ~~L 441 (1102)
T PRK13826 439 EGL 441 (1102)
T ss_pred HHH
Confidence 544
No 192
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=97.21 E-value=0.0021 Score=58.51 Aligned_cols=33 Identities=18% Similarity=0.202 Sum_probs=23.1
Q ss_pred CCCCccEEEEecchhhhhHhHHhHHHHHHHhhhc
Q 017196 194 TLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRS 227 (375)
Q Consensus 194 ~~~~~~~vIiDE~h~l~~~~~~~~l~~i~~~l~~ 227 (375)
....+++||+||||.|-...+ ..+...++..+.
T Consensus 126 ~~~~fKiiIlDEcdsmtsdaq-~aLrr~mE~~s~ 158 (346)
T KOG0989|consen 126 PCPPFKIIILDECDSMTSDAQ-AALRRTMEDFSR 158 (346)
T ss_pred CCCcceEEEEechhhhhHHHH-HHHHHHHhcccc
Confidence 345678999999999977664 445666655444
No 193
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=97.16 E-value=0.0011 Score=68.21 Aligned_cols=130 Identities=25% Similarity=0.275 Sum_probs=95.2
Q ss_pred CCCCCccHhhHHHHHHhhCCCCCCCCEEEECCCCCchHHHhHHHHHHHhhhcccCCceEEEEcccHHHHHHHHHHHHHhc
Q 017196 46 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIA 125 (375)
Q Consensus 46 ~g~~~~~~~Q~~~~~~~~~~~~~~~~~ii~a~TGsGKTl~~~l~il~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~ 125 (375)
.|. .|+.+|... .+..+..-+..+.||-|||+++.+|+.-....++ .+.+++-.--||.--...+..+.
T Consensus 77 lg~-~~~dVQliG------~i~lh~g~iaEM~TGEGKTL~atlp~ylnaL~gk----gVhvVTvNdYLA~RDae~m~~l~ 145 (822)
T COG0653 77 LGM-RHFDVQLLG------GIVLHLGDIAEMRTGEGKTLVATLPAYLNALAGK----GVHVVTVNDYLARRDAEWMGPLY 145 (822)
T ss_pred cCC-ChhhHHHhh------hhhhcCCceeeeecCCchHHHHHHHHHHHhcCCC----CcEEeeehHHhhhhCHHHHHHHH
Confidence 465 788888664 3335566799999999999999999987766652 48888888899998888888888
Q ss_pred cccCceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcCCCcEEEeCcHHH-HHHHhhc-----CCCCCCCcc
Q 017196 126 PAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRL-MDHINAT-----RGFTLEHLC 199 (375)
Q Consensus 126 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiV~Tp~~l-~~~l~~~-----~~~~~~~~~ 199 (375)
...|+.++....+.+.... ...-.|||.-+|-.-| .++++-. .....+.+.
T Consensus 146 ~~LGlsvG~~~~~m~~~ek-----------------------~~aY~~DItY~TnnElGFDYLRDNm~~~~ee~vqr~~~ 202 (822)
T COG0653 146 EFLGLSVGVILAGMSPEEK-----------------------RAAYACDITYGTNNELGFDYLRDNMVTSQEEKVQRGLN 202 (822)
T ss_pred HHcCCceeeccCCCChHHH-----------------------HHHHhcCceeccccccCcchhhhhhhccHHHhhhccCC
Confidence 8889999988887755443 2234579999997644 2333221 112356688
Q ss_pred EEEEecchhh
Q 017196 200 YLVVDETDRL 209 (375)
Q Consensus 200 ~vIiDE~h~l 209 (375)
+-|+||+|.+
T Consensus 203 faIvDEvDSI 212 (822)
T COG0653 203 FAIVDEVDSI 212 (822)
T ss_pred eEEEcchhhe
Confidence 9999999988
No 194
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=97.16 E-value=0.0058 Score=54.20 Aligned_cols=48 Identities=19% Similarity=0.266 Sum_probs=28.3
Q ss_pred CEEEECCCCCchHHHhHHHHHHHhhhcccCCceEEEEcccHHHHHHHHHHH
Q 017196 71 DLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVF 121 (375)
Q Consensus 71 ~~ii~a~TGsGKTl~~~l~il~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~~ 121 (375)
-+.|.+++|+|||.- +-++.+.+.+. .++.+++++... +........+
T Consensus 36 ~l~l~G~~G~GKTHL-L~Ai~~~~~~~-~~~~~v~y~~~~-~f~~~~~~~~ 83 (219)
T PF00308_consen 36 PLFLYGPSGLGKTHL-LQAIANEAQKQ-HPGKRVVYLSAE-EFIREFADAL 83 (219)
T ss_dssp EEEEEESTTSSHHHH-HHHHHHHHHHH-CTTS-EEEEEHH-HHHHHHHHHH
T ss_pred ceEEECCCCCCHHHH-HHHHHHHHHhc-cccccceeecHH-HHHHHHHHHH
Confidence 378999999999983 44455555443 234467766543 4444444433
No 195
>PRK08181 transposase; Validated
Probab=97.13 E-value=0.0051 Score=56.18 Aligned_cols=46 Identities=28% Similarity=0.319 Sum_probs=27.8
Q ss_pred CCCCEEEECCCCCchHHHhHHHHHHHhhhcccCCceEEEEcccHHHHHHHH
Q 017196 68 FERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVK 118 (375)
Q Consensus 68 ~~~~~ii~a~TGsGKTl~~~l~il~~l~~~~~~~~~~lil~Pt~~L~~Q~~ 118 (375)
.++++++.+|+|+|||..+.- +...+... +..++++ +..+|+.++.
T Consensus 105 ~~~nlll~Gp~GtGKTHLa~A-ia~~a~~~---g~~v~f~-~~~~L~~~l~ 150 (269)
T PRK08181 105 KGANLLLFGPPGGGKSHLAAA-IGLALIEN---GWRVLFT-RTTDLVQKLQ 150 (269)
T ss_pred cCceEEEEecCCCcHHHHHHH-HHHHHHHc---CCceeee-eHHHHHHHHH
Confidence 578899999999999975433 33333222 2235444 4456665553
No 196
>COG3421 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.09 E-value=0.0034 Score=61.82 Aligned_cols=41 Identities=22% Similarity=0.329 Sum_probs=28.6
Q ss_pred cCCCcEEEeCcHHHHHHHhhcCC--CC---CCCcc-EEEEecchhhh
Q 017196 170 QSAVDILVATPGRLMDHINATRG--FT---LEHLC-YLVVDETDRLL 210 (375)
Q Consensus 170 ~~~~~IiV~Tp~~l~~~l~~~~~--~~---~~~~~-~vIiDE~h~l~ 210 (375)
..+..|+++|.+.|...+.+.+. +. +.+.+ +++-||+|++-
T Consensus 79 nd~iei~fttiq~l~~d~~~~ken~itledl~~~klvfl~deahhln 125 (812)
T COG3421 79 NDAIEIYFTTIQGLFSDFTRAKENAITLEDLKDQKLVFLADEAHHLN 125 (812)
T ss_pred CCceEEEEeehHHHHHHHHhhccccccHhhHhhCceEEEechhhhhh
Confidence 45679999999999877755332 22 33444 57789999994
No 197
>PRK11054 helD DNA helicase IV; Provisional
Probab=97.02 E-value=0.0038 Score=64.56 Aligned_cols=82 Identities=18% Similarity=0.103 Sum_probs=58.6
Q ss_pred CCccHhhHHHHHHhhCCCCCCCCEEEECCCCCchHHHhHHHHHHHhhhcccCCceEEEEcccHHHHHHHHHHHHHhcccc
Q 017196 49 SSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAV 128 (375)
Q Consensus 49 ~~~~~~Q~~~~~~~~~~~~~~~~~ii~a~TGsGKTl~~~l~il~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~ 128 (375)
..+++-|++|+ .. ...+++|.|.-|||||.+.+--+...+........++++++.|+..|..+.+.+.......
T Consensus 195 ~~L~~~Q~~av---~~---~~~~~lV~agaGSGKT~vl~~r~ayLl~~~~~~~~~IL~ltft~~AA~em~eRL~~~lg~~ 268 (684)
T PRK11054 195 SPLNPSQARAV---VN---GEDSLLVLAGAGSGKTSVLVARAGWLLARGQAQPEQILLLAFGRQAAEEMDERIRERLGTE 268 (684)
T ss_pred CCCCHHHHHHH---hC---CCCCeEEEEeCCCCHHHHHHHHHHHHHHhCCCCHHHeEEEeccHHHHHHHHHHHHHhcCCC
Confidence 47999999985 32 3456899999999999986554444444443344589999999999999999888755433
Q ss_pred CceEEEee
Q 017196 129 GLSVGLAV 136 (375)
Q Consensus 129 ~~~v~~~~ 136 (375)
++.+..++
T Consensus 269 ~v~v~TFH 276 (684)
T PRK11054 269 DITARTFH 276 (684)
T ss_pred CcEEEeHH
Confidence 44444433
No 198
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=97.00 E-value=0.0027 Score=60.92 Aligned_cols=62 Identities=26% Similarity=0.308 Sum_probs=41.7
Q ss_pred CccHhhHHHHHHhhCCC--CCCCCEEEECCCCCchHHHhHHHHHHHhhhcccCCceEEEEcccHHHHH
Q 017196 50 SLFPVQVAVWQETIGPG--LFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLAL 115 (375)
Q Consensus 50 ~~~~~Q~~~~~~~~~~~--~~~~~~ii~a~TGsGKTl~~~l~il~~l~~~~~~~~~~lil~Pt~~L~~ 115 (375)
+++.-|+++++.++..+ ..+.++.|.++-|||||..+ -.+...+.. .+..+++++||.--|.
T Consensus 1 ~Ln~eQ~~~~~~v~~~~~~~~~~~~fv~G~~GtGKs~l~-~~i~~~~~~---~~~~~~~~a~tg~AA~ 64 (364)
T PF05970_consen 1 KLNEEQRRVFDTVIEAIENEEGLNFFVTGPAGTGKSFLI-KAIIDYLRS---RGKKVLVTAPTGIAAF 64 (364)
T ss_pred CCCHHHHHHHHHHHHHHHccCCcEEEEEcCCCCChhHHH-HHHHHHhcc---ccceEEEecchHHHHH
Confidence 36778999988875443 46678999999999999742 223333322 2346888888866444
No 199
>TIGR01075 uvrD DNA helicase II. Designed to identify uvrD members of the uvrD/rep subfamily.
Probab=96.97 E-value=0.003 Score=66.11 Aligned_cols=72 Identities=21% Similarity=0.111 Sum_probs=55.6
Q ss_pred CCccHhhHHHHHHhhCCCCCCCCEEEECCCCCchHHHhHHHHHHHhhhcccCCceEEEEcccHHHHHHHHHHHHHhcc
Q 017196 49 SSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAP 126 (375)
Q Consensus 49 ~~~~~~Q~~~~~~~~~~~~~~~~~ii~a~TGsGKTl~~~l~il~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~ 126 (375)
..+++-|.+|+.+ .+..++|.|.-|||||.+..--+...+.....+..++++++-|+..|.++...+.++.+
T Consensus 3 ~~Ln~~Q~~av~~------~~g~~lV~AgaGSGKT~~L~~Ria~Li~~~~v~p~~IL~lTFTnkAA~em~~Rl~~~~~ 74 (715)
T TIGR01075 3 DGLNDKQREAVAA------PPGNLLVLAGAGSGKTRVLTHRIAWLLSVENASPHSIMAVTFTNKAAAEMRHRIGALLG 74 (715)
T ss_pred cccCHHHHHHHcC------CCCCEEEEecCCCCHHHHHHHHHHHHHHcCCCCHHHeEeeeccHHHHHHHHHHHHHHhc
Confidence 3589999998532 34579999999999999865555555544334455899999999999999999988754
No 200
>PRK04296 thymidine kinase; Provisional
Probab=96.92 E-value=0.0025 Score=55.21 Aligned_cols=37 Identities=24% Similarity=0.307 Sum_probs=23.8
Q ss_pred CCEEEECCCCCchHHHhHHHHHHHhhhcccCCceEEEEccc
Q 017196 70 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPT 110 (375)
Q Consensus 70 ~~~ii~a~TGsGKTl~~~l~il~~l~~~~~~~~~~lil~Pt 110 (375)
.-.++.+|+|+|||..+ +-.+.+.... +.+++++-|.
T Consensus 3 ~i~litG~~GsGKTT~~-l~~~~~~~~~---g~~v~i~k~~ 39 (190)
T PRK04296 3 KLEFIYGAMNSGKSTEL-LQRAYNYEER---GMKVLVFKPA 39 (190)
T ss_pred EEEEEECCCCCHHHHHH-HHHHHHHHHc---CCeEEEEecc
Confidence 34688899999999754 4444444332 2367777663
No 201
>PRK11773 uvrD DNA-dependent helicase II; Provisional
Probab=96.83 E-value=0.0048 Score=64.62 Aligned_cols=72 Identities=17% Similarity=0.081 Sum_probs=55.2
Q ss_pred CCccHhhHHHHHHhhCCCCCCCCEEEECCCCCchHHHhHHHHHHHhhhcccCCceEEEEcccHHHHHHHHHHHHHhcc
Q 017196 49 SSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAP 126 (375)
Q Consensus 49 ~~~~~~Q~~~~~~~~~~~~~~~~~ii~a~TGsGKTl~~~l~il~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~ 126 (375)
..+++-|.+|+.+ ....++|.|+-|||||.+..--+...+.....+..++++|+-|+..|.++...+.++..
T Consensus 8 ~~Ln~~Q~~av~~------~~g~~lV~AgaGSGKT~vl~~Ria~Li~~~~v~p~~IL~lTFT~kAA~Em~~Rl~~~~~ 79 (721)
T PRK11773 8 DSLNDKQREAVAA------PLGNMLVLAGAGSGKTRVLVHRIAWLMQVENASPYSIMAVTFTNKAAAEMRHRIEQLLG 79 (721)
T ss_pred HhcCHHHHHHHhC------CCCCEEEEecCCCCHHHHHHHHHHHHHHcCCCChhHeEeeeccHHHHHHHHHHHHHHhc
Confidence 3589999998532 34579999999999999865555555544334445799999999999999999988754
No 202
>PF14617 CMS1: U3-containing 90S pre-ribosomal complex subunit
Probab=96.79 E-value=0.0034 Score=56.39 Aligned_cols=85 Identities=22% Similarity=0.275 Sum_probs=60.9
Q ss_pred CCceEEEEcccHHHHHHHHHHHHHhccccCceEEEeecCC-chHHHHHHHhhcCccccCccCCchhHHHhhcC-CCcEEE
Q 017196 100 RCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQS-SIADEISELIKRPKLEAGICYDPEDVLQELQS-AVDILV 177 (375)
Q Consensus 100 ~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~IiV 177 (375)
..|.+|||+.+---|-.+.+.++.+-.. +..|.-+.+-+ .. +|+...+.. ..+|.|
T Consensus 125 gsP~~lvvs~SalRa~dl~R~l~~~~~k-~~~v~KLFaKH~Kl---------------------~eqv~~L~~~~~~i~v 182 (252)
T PF14617_consen 125 GSPHVLVVSSSALRAADLIRALRSFKGK-DCKVAKLFAKHIKL---------------------EEQVKLLKKTRVHIAV 182 (252)
T ss_pred CCCEEEEEcchHHHHHHHHHHHHhhccC-CchHHHHHHhhccH---------------------HHHHHHHHhCCceEEE
Confidence 4578999999988888888888876321 12333333333 22 233334443 579999
Q ss_pred eCcHHHHHHHhhcCCCCCCCccEEEEecch
Q 017196 178 ATPGRLMDHINATRGFTLEHLCYLVVDETD 207 (375)
Q Consensus 178 ~Tp~~l~~~l~~~~~~~~~~~~~vIiDE~h 207 (375)
|||+++..++.. +.+.++.+.+||+|--|
T Consensus 183 GTP~Rl~kLle~-~~L~l~~l~~ivlD~s~ 211 (252)
T PF14617_consen 183 GTPGRLSKLLEN-GALSLSNLKRIVLDWSY 211 (252)
T ss_pred eChHHHHHHHHc-CCCCcccCeEEEEcCCc
Confidence 999999999977 77899999999999754
No 203
>PRK10919 ATP-dependent DNA helicase Rep; Provisional
Probab=96.76 E-value=0.0041 Score=64.51 Aligned_cols=71 Identities=20% Similarity=0.098 Sum_probs=54.7
Q ss_pred CccHhhHHHHHHhhCCCCCCCCEEEECCCCCchHHHhHHHHHHHhhhcccCCceEEEEcccHHHHHHHHHHHHHhcc
Q 017196 50 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAP 126 (375)
Q Consensus 50 ~~~~~Q~~~~~~~~~~~~~~~~~ii~a~TGsGKTl~~~l~il~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~ 126 (375)
.+++-|.+|+.+ .+..++|.|+.|||||.+.+--+...+.....+..++++++-|+.-|.++...+....+
T Consensus 2 ~Ln~~Q~~av~~------~~g~~lV~AgpGSGKT~vL~~Ria~Li~~~~v~p~~IL~lTFT~kAA~em~~Rl~~~l~ 72 (672)
T PRK10919 2 RLNPGQQQAVEF------VTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKERVAQTLG 72 (672)
T ss_pred CCCHHHHHHHhC------CCCCEEEEecCCCCHHHHHHHHHHHHHHhcCCCHHHeeeEechHHHHHHHHHHHHHHhC
Confidence 478899998532 24578999999999999866666666654333445799999999999999999987654
No 204
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=96.75 E-value=0.0052 Score=63.00 Aligned_cols=113 Identities=19% Similarity=0.197 Sum_probs=73.0
Q ss_pred CCEEEECCCCCchHHHhHHHHHHHhhhcc-----cCCceEEEEcccHHHHHHHHHHHHHhccccCceEEEeecCCchHHH
Q 017196 70 RDLCINSPTGSGKTLSYALPIVQTLSNRA-----VRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADE 144 (375)
Q Consensus 70 ~~~ii~a~TGsGKTl~~~l~il~~l~~~~-----~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 144 (375)
+..|+.-..|.|||...+..++..-.... ....-.||++|+ ++..||...+.+..+...+.+..++|.....
T Consensus 153 ~ggIladd~glgkt~~ti~l~l~~~~~~~~~~~~~~~kttLivcp~-s~~~qW~~elek~~~~~~l~v~v~~gr~kd~-- 229 (674)
T KOG1001|consen 153 RGGILADDMGLGKTVKTIALILKQKLKSKEEDRQKEFKTTLIVCPT-SLLTQWKTELEKVTEEDKLSIYVYHGRTKDK-- 229 (674)
T ss_pred ccceEeeccccchHHHHHHHHHhcccCCcchhhccccCceeEecch-HHHHHHHHHHhccCCccceEEEEeccccccc--
Confidence 35788899999999875443332222211 133458888887 6677899999777777678888888711111
Q ss_pred HHHHhhcCccccCccCCchhHHHhhcCCCcEEEeCcHHHHHHHhhcCCCCCCCccEEEEecchhhhhHh
Q 017196 145 ISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREA 213 (375)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiV~Tp~~l~~~l~~~~~~~~~~~~~vIiDE~h~l~~~~ 213 (375)
....+++|+++||+.+... .+.--.+--+|+||+|.+.+..
T Consensus 230 -----------------------~el~~~dVVltTy~il~~~-----~l~~i~w~Riildea~~ikn~~ 270 (674)
T KOG1001|consen 230 -----------------------SELNSYDVVLTTYDILKNS-----PLVKIKWLRIVLDEAHTIKNKD 270 (674)
T ss_pred -----------------------chhcCCceEEeeHHHhhcc-----cccceeEEEEEeccccccCCcc
Confidence 1134678999999887531 1111233479999999995443
No 205
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=96.73 E-value=0.0038 Score=49.85 Aligned_cols=54 Identities=28% Similarity=0.269 Sum_probs=46.3
Q ss_pred CcHHHHHHHHHhcC--CCeEEEEcCChhhHHHHHHHHHHhcCCcceEEecccccccccc
Q 017196 318 LKPLYLVALLQSLG--EEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVR 374 (375)
Q Consensus 318 ~k~~~l~~ll~~~~--~~k~lIF~~s~~~a~~l~~~L~~~g~~~~~~~~lh~~~~~~~R 374 (375)
.|...+..++.... .+++||||++...++.+++.|.. .+..+..+||+++..+|
T Consensus 12 ~k~~~i~~~i~~~~~~~~~~lvf~~~~~~~~~~~~~l~~---~~~~~~~~~~~~~~~~~ 67 (131)
T cd00079 12 EKLEALLELLKEHLKKGGKVLIFCPSKKMLDELAELLRK---PGIKVAALHGDGSQEER 67 (131)
T ss_pred HHHHHHHHHHHhcccCCCcEEEEeCcHHHHHHHHHHHHh---cCCcEEEEECCCCHHHH
Confidence 67788888888763 67999999999999999999985 44789999999987765
No 206
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.72 E-value=0.011 Score=58.17 Aligned_cols=25 Identities=24% Similarity=0.353 Sum_probs=17.9
Q ss_pred CEEEECCCCCchHHHhHHHHHHHhhh
Q 017196 71 DLCINSPTGSGKTLSYALPIVQTLSN 96 (375)
Q Consensus 71 ~~ii~a~TGsGKTl~~~l~il~~l~~ 96 (375)
.+++.+|.|+|||.++-+ +...+..
T Consensus 42 a~Lf~GP~GtGKTTlAri-LAk~Lnc 66 (484)
T PRK14956 42 AYIFFGPRGVGKTTIARI-LAKRLNC 66 (484)
T ss_pred EEEEECCCCCCHHHHHHH-HHHhcCc
Confidence 479999999999987644 3344433
No 207
>PF03354 Terminase_1: Phage Terminase ; InterPro: IPR005021 This entry is represented by Lactococcus phage bIL285, Orf41 (terminase). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=96.70 E-value=0.0053 Score=61.14 Aligned_cols=75 Identities=21% Similarity=0.105 Sum_probs=51.8
Q ss_pred HhhHHHHHHhhCCC-CCC----CCEEEECCCCCchHHHhHHHHHHHhhhcccCCceEEEEcccHHHHHHHHHHHHHhccc
Q 017196 53 PVQVAVWQETIGPG-LFE----RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPA 127 (375)
Q Consensus 53 ~~Q~~~~~~~~~~~-~~~----~~~ii~a~TGsGKTl~~~l~il~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~ 127 (375)
|+|...+-.++.-- ..| +.+++.-|-|.|||......++-.+.-.+..+..+++++++++-|..+++.++.+...
T Consensus 1 PwQ~fi~~~i~G~~~~~g~rrf~~~~l~v~RkNGKS~l~a~i~ly~l~~~g~~~~~i~~~A~~~~QA~~~f~~~~~~i~~ 80 (477)
T PF03354_consen 1 PWQKFILRSIFGWRKDDGRRRFREVYLEVPRKNGKSTLAAAIALYMLFLDGEPGAEIYCAANTRDQAKIVFDEAKKMIEA 80 (477)
T ss_pred CcHHHHHHHHhceEcCCCCEEEEEEEEEEcCccCccHHHHHHHHHHHhcCCccCceEEEEeCCHHHHHHHHHHHHHHHHh
Confidence 57777666655210 011 3588888999999986544444333333345678999999999999999999887654
No 208
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.70 E-value=0.015 Score=50.63 Aligned_cols=23 Identities=30% Similarity=0.384 Sum_probs=17.0
Q ss_pred CEEEECCCCCchHHHhHHHHHHH
Q 017196 71 DLCINSPTGSGKTLSYALPIVQT 93 (375)
Q Consensus 71 ~~ii~a~TGsGKTl~~~l~il~~ 93 (375)
-+++.+|||+|||.+.+=-+...
T Consensus 3 vi~lvGptGvGKTTt~aKLAa~~ 25 (196)
T PF00448_consen 3 VIALVGPTGVGKTTTIAKLAARL 25 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCchHhHHHHHHHHH
Confidence 36889999999999865444333
No 209
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=96.70 E-value=0.017 Score=46.60 Aligned_cols=18 Identities=33% Similarity=0.549 Sum_probs=15.5
Q ss_pred CCCCEEEECCCCCchHHH
Q 017196 68 FERDLCINSPTGSGKTLS 85 (375)
Q Consensus 68 ~~~~~ii~a~TGsGKTl~ 85 (375)
.+..+++.+|+|+|||..
T Consensus 18 ~~~~v~i~G~~G~GKT~l 35 (151)
T cd00009 18 PPKNLLLYGPPGTGKTTL 35 (151)
T ss_pred CCCeEEEECCCCCCHHHH
Confidence 367899999999999974
No 210
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=96.66 E-value=0.012 Score=53.35 Aligned_cols=50 Identities=24% Similarity=0.302 Sum_probs=34.3
Q ss_pred CCCCEEEECCCCCchHHHhHHHHHHHhhhcccCCceEEEEcccHHHHHHHHHHHH
Q 017196 68 FERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFA 122 (375)
Q Consensus 68 ~~~~~ii~a~TGsGKTl~~~l~il~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~~~ 122 (375)
.+.++++.+++|+|||..++- +...+.+. + .-++.+++.+|+.++...+.
T Consensus 104 ~~~nl~l~G~~G~GKThLa~A-i~~~l~~~---g-~sv~f~~~~el~~~Lk~~~~ 153 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIA-IGNELLKA---G-ISVLFITAPDLLSKLKAAFD 153 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHH-HHHHHHHc---C-CeEEEEEHHHHHHHHHHHHh
Confidence 788999999999999986544 33444332 2 34556667787777666554
No 211
>KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=96.58 E-value=0.0022 Score=64.12 Aligned_cols=50 Identities=22% Similarity=0.205 Sum_probs=42.0
Q ss_pred CCCCCccHhhHHHHHHhhCCCCCCCCEEEECCCCCchHHHhHHHHHHHhhh
Q 017196 46 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSN 96 (375)
Q Consensus 46 ~g~~~~~~~Q~~~~~~~~~~~~~~~~~ii~a~TGsGKTl~~~l~il~~l~~ 96 (375)
+.| +|+.+|.+-...++.-+..|+=.|+.+|||||||++.+=+++.++..
T Consensus 12 fPy-~PYdIQ~~lM~elyrvLe~GkIgIfESPTGTGKSLSLiCaaltWL~~ 61 (821)
T KOG1133|consen 12 FPY-TPYDIQEDLMRELYRVLEEGKIGIFESPTGTGKSLSLICAALTWLRD 61 (821)
T ss_pred CCC-CchhHHHHHHHHHHHHHhcCCeeeeeCCCCCCchHHHHHHHHHHHHH
Confidence 355 89999999888888777789988999999999999977777777744
No 212
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=96.56 E-value=0.031 Score=58.34 Aligned_cols=24 Identities=29% Similarity=0.528 Sum_probs=17.1
Q ss_pred CE-EEECCCCCchHHHhHHHHHHHhh
Q 017196 71 DL-CINSPTGSGKTLSYALPIVQTLS 95 (375)
Q Consensus 71 ~~-ii~a~TGsGKTl~~~l~il~~l~ 95 (375)
++ .|.|+||||||.+. -.++..+.
T Consensus 782 nvLYIyG~PGTGKTATV-K~VLrELq 806 (1164)
T PTZ00112 782 QILYISGMPGTGKTATV-YSVIQLLQ 806 (1164)
T ss_pred ceEEEECCCCCCHHHHH-HHHHHHHH
Confidence 45 59999999999874 33455553
No 213
>PRK14974 cell division protein FtsY; Provisional
Probab=96.56 E-value=0.04 Score=52.03 Aligned_cols=50 Identities=14% Similarity=0.101 Sum_probs=27.8
Q ss_pred CCEEEECCCCCchHHHhHHHHHHHhhhcccCCceEEEEccc---HHHHHHHHHHHHH
Q 017196 70 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPT---RDLALQVKDVFAA 123 (375)
Q Consensus 70 ~~~ii~a~TGsGKTl~~~l~il~~l~~~~~~~~~~lil~Pt---~~L~~Q~~~~~~~ 123 (375)
.-+++.+++|+|||.+..-.+ ..+... +.+++++..- ..-.+|+......
T Consensus 141 ~vi~~~G~~GvGKTTtiakLA-~~l~~~---g~~V~li~~Dt~R~~a~eqL~~~a~~ 193 (336)
T PRK14974 141 VVIVFVGVNGTGKTTTIAKLA-YYLKKN---GFSVVIAAGDTFRAGAIEQLEEHAER 193 (336)
T ss_pred eEEEEEcCCCCCHHHHHHHHH-HHHHHc---CCeEEEecCCcCcHHHHHHHHHHHHH
Confidence 347889999999998643323 333332 2245555432 3344555544443
No 214
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=96.54 E-value=0.025 Score=51.56 Aligned_cols=21 Identities=19% Similarity=0.238 Sum_probs=16.7
Q ss_pred CCCCEEEECCCCCchHHHhHH
Q 017196 68 FERDLCINSPTGSGKTLSYAL 88 (375)
Q Consensus 68 ~~~~~ii~a~TGsGKTl~~~l 88 (375)
...++++.+|+|||||..+-.
T Consensus 41 ~~~~vll~GppGtGKTtlA~~ 61 (261)
T TIGR02881 41 QVLHMIFKGNPGTGKTTVARI 61 (261)
T ss_pred CcceEEEEcCCCCCHHHHHHH
Confidence 345799999999999986533
No 215
>KOG1016 consensus Predicted DNA helicase, DEAD-box superfamily [General function prediction only]
Probab=96.49 E-value=0.032 Score=56.73 Aligned_cols=106 Identities=20% Similarity=0.232 Sum_probs=69.5
Q ss_pred CCHHHHHHHHhC---CCCCccHhhHHHHHHhhCCCCCCCCEEEECCCCCchHHHhHHHHHHHhhhcccCCceEEEEcccH
Q 017196 35 LDPRLKVALQNM---GISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTR 111 (375)
Q Consensus 35 l~~~i~~~l~~~---g~~~~~~~Q~~~~~~~~~~~~~~~~~ii~a~TGsGKTl~~~l~il~~l~~~~~~~~~~lil~Pt~ 111 (375)
|.+.+...++.. |+..++.-=.+.+...- -.+|-.+|+.-.+|.|||+. ++.....+.+.. +...+|+|+|-.
T Consensus 247 lapqla~v~kPHQiGGiRFlYDN~iESl~ryk--kSsGFGCILAHSMGLGKTlQ-VisF~diflRhT-~AKtVL~ivPiN 322 (1387)
T KOG1016|consen 247 LAPQLAHVLKPHQIGGIRFLYDNTIESLGRYK--KSSGFGCILAHSMGLGKTLQ-VISFSDIFLRHT-KAKTVLVIVPIN 322 (1387)
T ss_pred ehhhhHhhcCccccCcEEEehhhHHHHHhhcc--ccCCcceeeeeccccCceeE-EeehhHHHhhcC-ccceEEEEEehH
Confidence 777777777643 55555655555543321 23455688888999999986 455555555542 334699999988
Q ss_pred HHHHHHHHHHHHhcccc---------CceEEEeecCCchHHHH
Q 017196 112 DLALQVKDVFAAIAPAV---------GLSVGLAVGQSSIADEI 145 (375)
Q Consensus 112 ~L~~Q~~~~~~~~~~~~---------~~~v~~~~~~~~~~~~~ 145 (375)
.|- -|+.++..|.+.+ .+.|..+..+.......
T Consensus 323 TlQ-NWlsEfnmWiP~y~sD~~vrpR~F~vf~LnD~~KT~~~R 364 (1387)
T KOG1016|consen 323 TLQ-NWLSEFNMWIPKYFSDTGVRPRSFEVFLLNDGVKTFDQR 364 (1387)
T ss_pred HHH-HHHHHhhhhcCCCcccCCCccceeEEEEecCchhhHHHH
Confidence 774 4888888887763 25677777776554443
No 216
>PRK06921 hypothetical protein; Provisional
Probab=96.47 E-value=0.044 Score=50.10 Aligned_cols=45 Identities=16% Similarity=0.110 Sum_probs=27.1
Q ss_pred CCCCEEEECCCCCchHHHhHHHHHHHhhhcccCCceEEEEcccHHHHHH
Q 017196 68 FERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQ 116 (375)
Q Consensus 68 ~~~~~ii~a~TGsGKTl~~~l~il~~l~~~~~~~~~~lil~Pt~~L~~Q 116 (375)
.+.++++.+++|+|||..+ ..+...+... .+..++++. ..++..+
T Consensus 116 ~~~~l~l~G~~G~GKThLa-~aia~~l~~~--~g~~v~y~~-~~~l~~~ 160 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLL-TAAANELMRK--KGVPVLYFP-FVEGFGD 160 (266)
T ss_pred CCCeEEEECCCCCcHHHHH-HHHHHHHhhh--cCceEEEEE-HHHHHHH
Confidence 3567999999999999753 3444444432 123455554 3454444
No 217
>PRK08727 hypothetical protein; Validated
Probab=96.46 E-value=0.019 Score=51.39 Aligned_cols=35 Identities=17% Similarity=0.191 Sum_probs=21.3
Q ss_pred CCEEEECCCCCchHHHhHHHHHHHhhhcccCCceEEEEc
Q 017196 70 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVL 108 (375)
Q Consensus 70 ~~~ii~a~TGsGKTl~~~l~il~~l~~~~~~~~~~lil~ 108 (375)
.-+++.+++|+|||.... .+...+... +.+++++.
T Consensus 42 ~~l~l~G~~G~GKThL~~-a~~~~~~~~---~~~~~y~~ 76 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLAL-ALCAAAEQA---GRSSAYLP 76 (233)
T ss_pred CeEEEECCCCCCHHHHHH-HHHHHHHHc---CCcEEEEe
Confidence 348999999999997433 233333322 23566654
No 218
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=96.46 E-value=0.014 Score=54.52 Aligned_cols=66 Identities=20% Similarity=0.207 Sum_probs=48.0
Q ss_pred HhCCCCCccHhhHHHHHHhhCCCCCC-CCEEEECCCCCchHHHhHHHHHHHhhhcccCCceEEEEcccHHH
Q 017196 44 QNMGISSLFPVQVAVWQETIGPGLFE-RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDL 113 (375)
Q Consensus 44 ~~~g~~~~~~~Q~~~~~~~~~~~~~~-~~~ii~a~TGsGKTl~~~l~il~~l~~~~~~~~~~lil~Pt~~L 113 (375)
.-+|+...+..|.-|++-++. .. .-|.+.++-|||||+-++-+.+++....+ ...++|+-=|+..+
T Consensus 222 ~vwGi~prn~eQ~~ALdlLld---~dI~lV~L~G~AGtGKTlLALaAgleqv~e~~-~y~KiiVtRp~vpv 288 (436)
T COG1875 222 EVWGIRPRNAEQRVALDLLLD---DDIDLVSLGGKAGTGKTLLALAAGLEQVLERK-RYRKIIVTRPTVPV 288 (436)
T ss_pred hhhccCcccHHHHHHHHHhcC---CCCCeEEeeccCCccHhHHHHHHHHHHHHHHh-hhceEEEecCCcCc
Confidence 347997888888888876653 22 33678899999999998888888887764 23357776677654
No 219
>PRK12377 putative replication protein; Provisional
Probab=96.45 E-value=0.044 Score=49.49 Aligned_cols=47 Identities=15% Similarity=0.229 Sum_probs=28.4
Q ss_pred CCCEEEECCCCCchHHHhHHHHHHHhhhcccCCceEEEEcccHHHHHHHHHH
Q 017196 69 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDV 120 (375)
Q Consensus 69 ~~~~ii~a~TGsGKTl~~~l~il~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~ 120 (375)
..++++.+++|+|||..+ .++...+... +..+ +.++..+|..++...
T Consensus 101 ~~~l~l~G~~GtGKThLa-~AIa~~l~~~---g~~v-~~i~~~~l~~~l~~~ 147 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLA-AAIGNRLLAK---GRSV-IVVTVPDVMSRLHES 147 (248)
T ss_pred CCeEEEECCCCCCHHHHH-HHHHHHHHHc---CCCe-EEEEHHHHHHHHHHH
Confidence 357999999999999754 3344444432 1224 444555666655443
No 220
>TIGR01074 rep ATP-dependent DNA helicase Rep. Designed to identify rep members of the uvrD/rep subfamily.
Probab=96.41 E-value=0.01 Score=61.68 Aligned_cols=70 Identities=21% Similarity=0.123 Sum_probs=53.7
Q ss_pred ccHhhHHHHHHhhCCCCCCCCEEEECCCCCchHHHhHHHHHHHhhhcccCCceEEEEcccHHHHHHHHHHHHHhcc
Q 017196 51 LFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAP 126 (375)
Q Consensus 51 ~~~~Q~~~~~~~~~~~~~~~~~ii~a~TGsGKTl~~~l~il~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~ 126 (375)
+++-|.+++.+ .+.+++|.|+.|||||.+.+--+...+.....+..++++|+.|+.-+.++.+.+.+..+
T Consensus 2 Ln~~Q~~av~~------~~~~~~V~Ag~GSGKT~~L~~ri~~ll~~~~~~p~~IL~vTFt~~Aa~em~~Rl~~~l~ 71 (664)
T TIGR01074 2 LNPQQQEAVEY------VTGPCLVLAGAGSGKTRVITNKIAYLIQNCGYKARNIAAVTFTNKAAREMKERVAKTLG 71 (664)
T ss_pred CCHHHHHHHhC------CCCCEEEEecCCCCHHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHHhC
Confidence 67889887532 34679999999999999866666666644333445799999999999999999987654
No 221
>CHL00181 cbbX CbbX; Provisional
Probab=96.41 E-value=0.029 Score=51.90 Aligned_cols=21 Identities=19% Similarity=0.184 Sum_probs=17.1
Q ss_pred CCCCEEEECCCCCchHHHhHH
Q 017196 68 FERDLCINSPTGSGKTLSYAL 88 (375)
Q Consensus 68 ~~~~~ii~a~TGsGKTl~~~l 88 (375)
.+.++++.+|+|||||..+-.
T Consensus 58 ~~~~ill~G~pGtGKT~lAr~ 78 (287)
T CHL00181 58 PGLHMSFTGSPGTGKTTVALK 78 (287)
T ss_pred CCceEEEECCCCCCHHHHHHH
Confidence 355689999999999987644
No 222
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=96.39 E-value=0.022 Score=55.22 Aligned_cols=27 Identities=26% Similarity=0.475 Sum_probs=19.4
Q ss_pred CCCEEEECCCCCchHHHhHHHHHHHhhh
Q 017196 69 ERDLCINSPTGSGKTLSYALPIVQTLSN 96 (375)
Q Consensus 69 ~~~~ii~a~TGsGKTl~~~l~il~~l~~ 96 (375)
..+++|.||+|+|||.. +-.++..+..
T Consensus 55 ~~~~lI~G~~GtGKT~l-~~~v~~~l~~ 81 (394)
T PRK00411 55 PLNVLIYGPPGTGKTTT-VKKVFEELEE 81 (394)
T ss_pred CCeEEEECCCCCCHHHH-HHHHHHHHHH
Confidence 36799999999999975 3444454443
No 223
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=96.36 E-value=0.0072 Score=48.41 Aligned_cols=40 Identities=20% Similarity=0.158 Sum_probs=25.1
Q ss_pred CCCEEEECCCCCchHHHhHHHHHHHhhhcccCCceEEEEcccHH
Q 017196 69 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRD 112 (375)
Q Consensus 69 ~~~~ii~a~TGsGKTl~~~l~il~~l~~~~~~~~~~lil~Pt~~ 112 (375)
+..+++.+|+|+|||..+.. +...+.... ..++++.+...
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~-l~~~~~~~~---~~~~~~~~~~~ 41 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARA-LARELGPPG---GGVIYIDGEDI 41 (148)
T ss_pred CCEEEEECCCCCcHHHHHHH-HHhccCCCC---CCEEEECCEEc
Confidence 46789999999999986432 333332221 23677776654
No 224
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=96.34 E-value=0.1 Score=41.54 Aligned_cols=31 Identities=32% Similarity=0.533 Sum_probs=20.1
Q ss_pred CccEEEEecchhhhhHh-------HHhHHHHHHHhhhc
Q 017196 197 HLCYLVVDETDRLLREA-------YQAWLPTVLQLTRS 227 (375)
Q Consensus 197 ~~~~vIiDE~h~l~~~~-------~~~~l~~i~~~l~~ 227 (375)
...++++||+|.+.... -...+..++..+..
T Consensus 58 ~~~vl~iDe~d~l~~~~~~~~~~~~~~~~~~L~~~l~~ 95 (132)
T PF00004_consen 58 KPCVLFIDEIDKLFPKSQPSSSSFEQRLLNQLLSLLDN 95 (132)
T ss_dssp TSEEEEEETGGGTSHHCSTSSSHHHHHHHHHHHHHHHT
T ss_pred cceeeeeccchhcccccccccccccccccceeeecccc
Confidence 35799999999997664 22334555555544
No 225
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=96.33 E-value=0.067 Score=45.77 Aligned_cols=49 Identities=14% Similarity=0.091 Sum_probs=31.8
Q ss_pred EEEECCCCCchHHHhHHHHHHHhhhcccCCceEEEEcccHHHHHHHHHHHHHhc
Q 017196 72 LCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIA 125 (375)
Q Consensus 72 ~ii~a~TGsGKTl~~~l~il~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~ 125 (375)
++|.+|+|+|||...+--+...+.. +.+++|++. .+-..++.+.++.+.
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~----g~~v~~~s~-e~~~~~~~~~~~~~g 50 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLAR----GEPGLYVTL-EESPEELIENAESLG 50 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHC----CCcEEEEEC-CCCHHHHHHHHHHcC
Confidence 6889999999998654334444433 235777754 455667777777653
No 226
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=96.31 E-value=0.011 Score=63.08 Aligned_cols=101 Identities=17% Similarity=0.095 Sum_probs=67.4
Q ss_pred CCCCCCEEEECCCCCchHHHhHHHHHHHhhhc--------------ccCCceEEEEcccHHHHHHHHHHHHHhccccCce
Q 017196 66 GLFERDLCINSPTGSGKTLSYALPIVQTLSNR--------------AVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLS 131 (375)
Q Consensus 66 ~~~~~~~ii~a~TGsGKTl~~~l~il~~l~~~--------------~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~ 131 (375)
...|++++..-..|.|||.+-+...+....+. .....-+|||+|. ++..||+.++....... ++
T Consensus 371 ~~~g~~~~~ade~~~qk~~~~l~~~l~~~~k~~~~~cS~~~~e~~n~~~tgaTLII~P~-aIl~QW~~EI~kH~~~~-lK 448 (1394)
T KOG0298|consen 371 KKHGKRVQCADEMGWQKTSEKLILELSDLPKLCPSCCSELVKEGENLVETGATLIICPN-AILMQWFEEIHKHISSL-LK 448 (1394)
T ss_pred ccCCcceeehhhhhccchHHHHHHHHhcccccchhhhhHHHhcccceeecCceEEECcH-HHHHHHHHHHHHhcccc-ce
Confidence 44567788888999999998655444332110 0122359999997 77889999999998864 78
Q ss_pred EEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcCCCcEEEeCcHHHHHHHhh
Q 017196 132 VGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINA 189 (375)
Q Consensus 132 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiV~Tp~~l~~~l~~ 189 (375)
+..+.|-....-. .+ ..-..|||||||++.|..-+-+
T Consensus 449 v~~Y~Girk~~~~----------------~~-----~el~~yDIVlTtYdiLr~El~h 485 (1394)
T KOG0298|consen 449 VLLYFGIRKTFWL----------------SP-----FELLQYDIVLTTYDILRNELYH 485 (1394)
T ss_pred EEEEechhhhccc----------------Cc-----hhhhccCEEEeehHHHHhHhhc
Confidence 8777774321100 00 1224689999999998776643
No 227
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=96.30 E-value=0.033 Score=47.65 Aligned_cols=107 Identities=20% Similarity=0.213 Sum_probs=61.5
Q ss_pred CCCEEEECCCCCchHHHhHHHHHHHhhhcccCCceEEEEcccHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHH
Q 017196 69 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISEL 148 (375)
Q Consensus 69 ~~~~ii~a~TGsGKTl~~~l~il~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 148 (375)
++=-++.+|++||||.. ++.++++-...+.++++..|-..- .++ ...+.+...
T Consensus 4 g~l~~i~gpM~SGKT~e----Ll~r~~~~~~~g~~v~vfkp~iD~-------------R~~--~~~V~Sr~G-------- 56 (201)
T COG1435 4 GWLEFIYGPMFSGKTEE----LLRRARRYKEAGMKVLVFKPAIDT-------------RYG--VGKVSSRIG-------- 56 (201)
T ss_pred EEEEEEEccCcCcchHH----HHHHHHHHHHcCCeEEEEeccccc-------------ccc--cceeeeccC--------
Confidence 33457889999999975 344444433344578888886531 111 111111111
Q ss_pred hhcCccccCccCCchhHHHhhcCCCcEEEeCcHHHHHHHhhcCCCCCCCccEEEEecchhhhhHhHHhHHHHHHHhhh
Q 017196 149 IKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTR 226 (375)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~IiV~Tp~~l~~~l~~~~~~~~~~~~~vIiDE~h~l~~~~~~~~l~~i~~~l~ 226 (375)
.+..-++|-.+..+.+.+.... ... .+++|.||||+ +++...-..+..+.+.+.
T Consensus 57 ---------------------~~~~A~~i~~~~~i~~~i~~~~-~~~-~~~~v~IDEaQ-F~~~~~v~~l~~lad~lg 110 (201)
T COG1435 57 ---------------------LSSEAVVIPSDTDIFDEIAALH-EKP-PVDCVLIDEAQ-FFDEELVYVLNELADRLG 110 (201)
T ss_pred ---------------------CcccceecCChHHHHHHHHhcc-cCC-CcCEEEEehhH-hCCHHHHHHHHHHHhhcC
Confidence 1123566667777777776522 111 27899999998 556655555666666543
No 228
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=96.29 E-value=0.039 Score=51.69 Aligned_cols=48 Identities=25% Similarity=0.312 Sum_probs=35.9
Q ss_pred CCccHhhHHHHHHhhCCCCCCC---CEEEECCCCCchHHHhHHHHHHHhhhc
Q 017196 49 SSLFPVQVAVWQETIGPGLFER---DLCINSPTGSGKTLSYALPIVQTLSNR 97 (375)
Q Consensus 49 ~~~~~~Q~~~~~~~~~~~~~~~---~~ii~a~TGsGKTl~~~l~il~~l~~~ 97 (375)
..++|||..+|+.+...+..|+ -.++.+|.|+||+..+ ..+...+...
T Consensus 3 ~~~yPW~~~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA-~~lA~~LlC~ 53 (319)
T PRK08769 3 SAFSPWQQRAYDQTVAALDAGRLGHGLLICGPEGLGKRAVA-LALAEHVLAS 53 (319)
T ss_pred ccccccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHH-HHHHHHHhCC
Confidence 4689999999999886665554 4899999999999754 4444555443
No 229
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=96.24 E-value=0.039 Score=46.44 Aligned_cols=27 Identities=30% Similarity=0.433 Sum_probs=18.8
Q ss_pred CCEEEECCCCCchHHHhHHHHHHHhhhc
Q 017196 70 RDLCINSPTGSGKTLSYALPIVQTLSNR 97 (375)
Q Consensus 70 ~~~ii~a~TGsGKTl~~~l~il~~l~~~ 97 (375)
+..++.+|.|+||+..+ ......+...
T Consensus 20 ha~L~~G~~g~gk~~~a-~~~a~~ll~~ 46 (162)
T PF13177_consen 20 HALLFHGPSGSGKKTLA-LAFARALLCS 46 (162)
T ss_dssp SEEEEECSTTSSHHHHH-HHHHHHHC-T
T ss_pred eeEEEECCCCCCHHHHH-HHHHHHHcCC
Confidence 45799999999999764 4455555544
No 230
>PRK06893 DNA replication initiation factor; Validated
Probab=96.23 E-value=0.033 Score=49.71 Aligned_cols=30 Identities=10% Similarity=0.212 Sum_probs=18.8
Q ss_pred CCccEEEEecchhhhh-HhHHhHHHHHHHhh
Q 017196 196 EHLCYLVVDETDRLLR-EAYQAWLPTVLQLT 225 (375)
Q Consensus 196 ~~~~~vIiDE~h~l~~-~~~~~~l~~i~~~l 225 (375)
+..+++|+||+|.+.. ..+...+..+++..
T Consensus 90 ~~~dlLilDDi~~~~~~~~~~~~l~~l~n~~ 120 (229)
T PRK06893 90 EQQDLVCLDDLQAVIGNEEWELAIFDLFNRI 120 (229)
T ss_pred ccCCEEEEeChhhhcCChHHHHHHHHHHHHH
Confidence 3567999999998752 33444444445444
No 231
>COG1444 Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=96.22 E-value=0.06 Score=55.47 Aligned_cols=82 Identities=12% Similarity=0.202 Sum_probs=53.7
Q ss_pred HHhCCCCCccHhhHHHHHHhhCCCCCCC-CEEEECCCCCchHHHhHHHHHHHhhhcccCCceEEEEcccHHHHHHHHHHH
Q 017196 43 LQNMGISSLFPVQVAVWQETIGPGLFER-DLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVF 121 (375)
Q Consensus 43 l~~~g~~~~~~~Q~~~~~~~~~~~~~~~-~~ii~a~TGsGKTl~~~l~il~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~~ 121 (375)
+.....+.+..-|.+.+..++. .++ -+++.|.-|=|||.+.-+.+........ ..+++|.+|+.+-++.++..+
T Consensus 207 l~~l~~T~dQ~~~l~~~~~l~~---~~~~~~vlTAdRGRGKSA~lGi~~~~~~~~~~--~~~iiVTAP~~~nv~~Lf~fa 281 (758)
T COG1444 207 LYELCLTEDQAEALEILERLLD---APKRALVLTADRGRGKSAALGIALAAAARLAG--SVRIIVTAPTPANVQTLFEFA 281 (758)
T ss_pred HhhhhcChhHHHHHHHHHHHHc---CCCceEEEEcCCCCcHhHHHhHHHHHHHHhcC--CceEEEeCCCHHHHHHHHHHH
Confidence 4444444555555556655554 333 5788899999999887666633332221 457999999999888888877
Q ss_pred HHhccccC
Q 017196 122 AAIAPAVG 129 (375)
Q Consensus 122 ~~~~~~~~ 129 (375)
.+-....|
T Consensus 282 ~~~l~~lg 289 (758)
T COG1444 282 GKGLEFLG 289 (758)
T ss_pred HHhHHHhC
Confidence 66555444
No 232
>PHA02533 17 large terminase protein; Provisional
Probab=96.21 E-value=0.12 Score=51.96 Aligned_cols=71 Identities=14% Similarity=0.015 Sum_probs=51.6
Q ss_pred CccHhhHHHHHHhhCCCCCCCCEEEECCCCCchHHHhHHHHHHHhhhcccCCceEEEEcccHHHHHHHHHHHHHhcc
Q 017196 50 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAP 126 (375)
Q Consensus 50 ~~~~~Q~~~~~~~~~~~~~~~~~ii~a~TGsGKTl~~~l~il~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~ 126 (375)
.|.|+|...+..+. .++..++..+-..|||.+.+..++...... ++..+++++|+.+-|..+++.++.+..
T Consensus 59 ~L~p~Q~~i~~~~~----~~R~~ii~~aRq~GKStl~a~~al~~a~~~--~~~~v~i~A~~~~QA~~vF~~ik~~ie 129 (534)
T PHA02533 59 QMRDYQKDMLKIMH----KNRFNACNLSRQLGKTTVVAIFLLHYVCFN--KDKNVGILAHKASMAAEVLDRTKQAIE 129 (534)
T ss_pred CCcHHHHHHHHHHh----cCeEEEEEEcCcCChHHHHHHHHHHHHHhC--CCCEEEEEeCCHHHHHHHHHHHHHHHH
Confidence 57899999776543 356667888889999998764444333322 344899999999999988888876544
No 233
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=96.20 E-value=0.017 Score=57.56 Aligned_cols=20 Identities=25% Similarity=0.247 Sum_probs=16.5
Q ss_pred CCEEEECCCCCchHHHhHHH
Q 017196 70 RDLCINSPTGSGKTLSYALP 89 (375)
Q Consensus 70 ~~~ii~a~TGsGKTl~~~l~ 89 (375)
+.+++++|.|+|||.++-+-
T Consensus 44 ~a~Lf~Gp~G~GKTT~Aril 63 (507)
T PRK06645 44 GGYLLTGIRGVGKTTSARII 63 (507)
T ss_pred ceEEEECCCCCCHHHHHHHH
Confidence 46899999999999876443
No 234
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=96.19 E-value=0.068 Score=48.89 Aligned_cols=78 Identities=15% Similarity=0.098 Sum_probs=41.5
Q ss_pred HHHHHHHhCCCCCccHhhHHHHHHhhCCCCCCCCEEEECCCCCchHHHhHHHHHHHhhhcccCCceEEEEcccHHHHHHH
Q 017196 38 RLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQV 117 (375)
Q Consensus 38 ~i~~~l~~~g~~~~~~~Q~~~~~~~~~~~~~~~~~ii~a~TGsGKTl~~~l~il~~l~~~~~~~~~~lil~Pt~~L~~Q~ 117 (375)
++.++|...|+.+..+-=.+ ++..+..|.-++|.|++|+|||.-..-.+.+.... .+.+++|+.-- +-..++
T Consensus 3 ~~~~~~~~~~~~tg~~~Ld~----~~gG~~~g~~~~i~g~~G~GKT~l~~~~~~~~~~~---~g~~vl~iS~E-~~~~~~ 74 (271)
T cd01122 3 EIREALSNEEVWWPFPVLNK----LTKGLRKGELIILTAGTGVGKTTFLREYALDLITQ---HGVRVGTISLE-EPVVRT 74 (271)
T ss_pred hhhccccccCCCCCcceeee----eeEEEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHh---cCceEEEEEcc-cCHHHH
Confidence 45555554444333332222 23455577889999999999997543333333322 12357777632 223445
Q ss_pred HHHHHH
Q 017196 118 KDVFAA 123 (375)
Q Consensus 118 ~~~~~~ 123 (375)
.+.+..
T Consensus 75 ~~r~~~ 80 (271)
T cd01122 75 ARRLLG 80 (271)
T ss_pred HHHHHH
Confidence 554443
No 235
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=96.19 E-value=0.057 Score=53.42 Aligned_cols=45 Identities=18% Similarity=0.173 Sum_probs=26.6
Q ss_pred CCEEEECCCCCchHHHhHHHHHHHhhhcccCCceEEEEcccHHHHHHH
Q 017196 70 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQV 117 (375)
Q Consensus 70 ~~~ii~a~TGsGKTl~~~l~il~~l~~~~~~~~~~lil~Pt~~L~~Q~ 117 (375)
..+++.||+|+|||..+ -.+...+... .++.+++++ +..++..+.
T Consensus 149 ~~l~l~G~~G~GKThL~-~ai~~~~~~~-~~~~~v~yi-~~~~~~~~~ 193 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLL-HAIGNYILEK-NPNAKVVYV-TSEKFTNDF 193 (450)
T ss_pred CeEEEECCCCCCHHHHH-HHHHHHHHHh-CCCCeEEEE-EHHHHHHHH
Confidence 45899999999999753 3344444432 123456666 444554443
No 236
>PRK11823 DNA repair protein RadA; Provisional
Probab=96.18 E-value=0.089 Score=51.84 Aligned_cols=62 Identities=19% Similarity=0.162 Sum_probs=37.7
Q ss_pred HHHhhC-CCCCCCCEEEECCCCCchHHHhHHHHHHHhhhcccCCceEEEEcccHHHHHHHHHHHHHhc
Q 017196 59 WQETIG-PGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIA 125 (375)
Q Consensus 59 ~~~~~~-~~~~~~~~ii~a~TGsGKTl~~~l~il~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~ 125 (375)
++.++. .+..|.-+++.+++|+|||.-. +-+.....+ .+.+++|+.- .+-..|+...++++.
T Consensus 69 LD~~LgGGi~~Gs~~lI~G~pG~GKTtL~-lq~a~~~a~---~g~~vlYvs~-Ees~~qi~~ra~rlg 131 (446)
T PRK11823 69 LDRVLGGGLVPGSVVLIGGDPGIGKSTLL-LQVAARLAA---AGGKVLYVSG-EESASQIKLRAERLG 131 (446)
T ss_pred HHHHhcCCccCCEEEEEECCCCCCHHHHH-HHHHHHHHh---cCCeEEEEEc-cccHHHHHHHHHHcC
Confidence 444453 4446677899999999999753 333333322 1236888774 444567766666553
No 237
>PRK05642 DNA replication initiation factor; Validated
Probab=96.17 E-value=0.049 Score=48.80 Aligned_cols=31 Identities=13% Similarity=0.208 Sum_probs=20.2
Q ss_pred CccEEEEecchhhhh-HhHHhHHHHHHHhhhc
Q 017196 197 HLCYLVVDETDRLLR-EAYQAWLPTVLQLTRS 227 (375)
Q Consensus 197 ~~~~vIiDE~h~l~~-~~~~~~l~~i~~~l~~ 227 (375)
..+++|+|++|.+.. ..+...+-.+++.+..
T Consensus 97 ~~d~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~ 128 (234)
T PRK05642 97 QYELVCLDDLDVIAGKADWEEALFHLFNRLRD 128 (234)
T ss_pred hCCEEEEechhhhcCChHHHHHHHHHHHHHHh
Confidence 456899999997743 2445556666665543
No 238
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=96.15 E-value=0.28 Score=56.82 Aligned_cols=65 Identities=17% Similarity=0.143 Sum_probs=45.5
Q ss_pred CccHhhHHHHHHhhCCCCCCCCEEEECCCCCchHHHhHHHHHHHhhhcccCCceEEEEcccHHHHHHHHHH
Q 017196 50 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDV 120 (375)
Q Consensus 50 ~~~~~Q~~~~~~~~~~~~~~~~~ii~a~TGsGKTl~~~l~il~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~ 120 (375)
.+++-|.+|+..++.. .++-.+|.++-|+|||.+ +-.+...+.. .+.++++++||..-+.++...
T Consensus 429 ~Ls~~Q~~Av~~il~s--~~~v~ii~G~aGTGKTt~-l~~l~~~~~~---~G~~V~~lAPTgrAA~~L~e~ 493 (1960)
T TIGR02760 429 ALSPSNKDAVSTLFTS--TKRFIIINGFGGTGSTEI-AQLLLHLASE---QGYEIQIITAGSLSAQELRQK 493 (1960)
T ss_pred CCCHHHHHHHHHHHhC--CCCeEEEEECCCCCHHHH-HHHHHHHHHh---cCCeEEEEeCCHHHHHHHHHH
Confidence 6899999998877741 235688999999999975 3333333332 334799999998766555443
No 239
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=96.08 E-value=0.11 Score=48.13 Aligned_cols=19 Identities=21% Similarity=0.251 Sum_probs=16.1
Q ss_pred CCCCEEEECCCCCchHHHh
Q 017196 68 FERDLCINSPTGSGKTLSY 86 (375)
Q Consensus 68 ~~~~~ii~a~TGsGKTl~~ 86 (375)
.+.++++.+|+|||||..+
T Consensus 57 ~~~~vll~G~pGTGKT~lA 75 (284)
T TIGR02880 57 PTLHMSFTGNPGTGKTTVA 75 (284)
T ss_pred CCceEEEEcCCCCCHHHHH
Confidence 3457999999999999875
No 240
>PRK07952 DNA replication protein DnaC; Validated
Probab=96.08 E-value=0.056 Score=48.68 Aligned_cols=41 Identities=22% Similarity=0.293 Sum_probs=24.6
Q ss_pred CCEEEECCCCCchHHHhHHHHHHHhhhcccCCceEEEEcccHHHHH
Q 017196 70 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLAL 115 (375)
Q Consensus 70 ~~~ii~a~TGsGKTl~~~l~il~~l~~~~~~~~~~lil~Pt~~L~~ 115 (375)
..+++.+++|+|||..+. .+...+... +..++++ +..+|..
T Consensus 100 ~~~~l~G~~GtGKThLa~-aia~~l~~~---g~~v~~i-t~~~l~~ 140 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAA-AICNELLLR---GKSVLII-TVADIMS 140 (244)
T ss_pred ceEEEECCCCCCHHHHHH-HHHHHHHhc---CCeEEEE-EHHHHHH
Confidence 468999999999997543 344444432 2235554 4444443
No 241
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=96.08 E-value=0.061 Score=55.57 Aligned_cols=24 Identities=25% Similarity=0.373 Sum_probs=17.8
Q ss_pred CCccEEEEecchhhhhHhHHhHHH
Q 017196 196 EHLCYLVVDETDRLLREAYQAWLP 219 (375)
Q Consensus 196 ~~~~~vIiDE~h~l~~~~~~~~l~ 219 (375)
...+++||||+|+|-...+...+.
T Consensus 118 gr~KVIIIDEah~LT~~A~NALLK 141 (830)
T PRK07003 118 ARFKVYMIDEVHMLTNHAFNAMLK 141 (830)
T ss_pred CCceEEEEeChhhCCHHHHHHHHH
Confidence 457899999999997666554444
No 242
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.06 E-value=0.037 Score=55.08 Aligned_cols=58 Identities=17% Similarity=0.161 Sum_probs=33.5
Q ss_pred CccCccccCCCCCCCCCCHHHHHHHHhCCCCCccHhhHHHHHHhhCCCCCCCCEEEECCCCCchHHHh
Q 017196 19 VDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSY 86 (375)
Q Consensus 19 ~~~~~~~~~~~~~~~~l~~~i~~~l~~~g~~~~~~~Q~~~~~~~~~~~~~~~~~ii~a~TGsGKTl~~ 86 (375)
.|..+|.+++ --.++...|+- -+..|-..+.. |+. + .+.-...+++++|.|+|||+.+
T Consensus 505 VPdVtW~dIG------aL~~vR~eL~~-aI~~PiK~pd~-~k~-l-Gi~~PsGvLL~GPPGCGKTLlA 562 (802)
T KOG0733|consen 505 VPDVTWDDIG------ALEEVRLELNM-AILAPIKRPDL-FKA-L-GIDAPSGVLLCGPPGCGKTLLA 562 (802)
T ss_pred cCCCChhhcc------cHHHHHHHHHH-HHhhhccCHHH-HHH-h-CCCCCCceEEeCCCCccHHHHH
Confidence 3456888888 55566666542 22233222211 111 1 2223567999999999999853
No 243
>PHA03333 putative ATPase subunit of terminase; Provisional
Probab=96.05 E-value=0.088 Score=53.58 Aligned_cols=73 Identities=14% Similarity=0.094 Sum_probs=50.4
Q ss_pred ccHhhHHHHHHhhCCCCCCCCEEEECCCCCchHHHhHHHHHHHhhhcccCCceEEEEcccHHHHHHHHHHHHHhccc
Q 017196 51 LFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPA 127 (375)
Q Consensus 51 ~~~~Q~~~~~~~~~~~~~~~~~ii~a~TGsGKTl~~~l~il~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~ 127 (375)
|.|.=.+-++.++..+ +.+--++.+|-|.|||.+..+.+...+.. .+.+++|.+|...-+.++++.++.....
T Consensus 170 ~~~~~~~~id~~~~~f-kq~~tV~taPRqrGKS~iVgi~l~~La~f---~Gi~IlvTAH~~~ts~evF~rv~~~le~ 242 (752)
T PHA03333 170 PSPRTLREIDRIFDEY-GKCYTAATVPRRCGKTTIMAIILAAMISF---LEIDIVVQAQRKTMCLTLYNRVETVVHA 242 (752)
T ss_pred CChhhHHHHHHHHHHH-hhcceEEEeccCCCcHHHHHHHHHHHHHh---cCCeEEEECCChhhHHHHHHHHHHHHHH
Confidence 4555555555555433 33456778999999998865554443322 2357999999999999999988877763
No 244
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.04 E-value=0.043 Score=54.38 Aligned_cols=21 Identities=19% Similarity=0.294 Sum_probs=17.0
Q ss_pred CCEEEECCCCCchHHHhHHHH
Q 017196 70 RDLCINSPTGSGKTLSYALPI 90 (375)
Q Consensus 70 ~~~ii~a~TGsGKTl~~~l~i 90 (375)
+..++++|.|+|||.++.+-+
T Consensus 36 ha~Lf~Gp~G~GKTT~ArilA 56 (491)
T PRK14964 36 QSILLVGASGVGKTTCARIIS 56 (491)
T ss_pred ceEEEECCCCccHHHHHHHHH
Confidence 568999999999998765433
No 245
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=96.04 E-value=0.04 Score=58.13 Aligned_cols=26 Identities=27% Similarity=0.393 Sum_probs=18.7
Q ss_pred CCEEEECCCCCchHHHhHHHHHHHhhh
Q 017196 70 RDLCINSPTGSGKTLSYALPIVQTLSN 96 (375)
Q Consensus 70 ~~~ii~a~TGsGKTl~~~l~il~~l~~ 96 (375)
+-.|+.+|.|+|||.++.+.+ ..+.+
T Consensus 38 Ha~Lf~Gp~G~GKTt~A~~lA-r~L~C 63 (824)
T PRK07764 38 HAYLFSGPRGCGKTSSARILA-RSLNC 63 (824)
T ss_pred ceEEEECCCCCCHHHHHHHHH-HHhCc
Confidence 347899999999998865544 34443
No 246
>PRK06835 DNA replication protein DnaC; Validated
Probab=95.99 E-value=0.083 Score=49.81 Aligned_cols=45 Identities=22% Similarity=0.267 Sum_probs=27.5
Q ss_pred CCCEEEECCCCCchHHHhHHHHHHHhhhcccCCceEEEEcccHHHHHHHH
Q 017196 69 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVK 118 (375)
Q Consensus 69 ~~~~ii~a~TGsGKTl~~~l~il~~l~~~~~~~~~~lil~Pt~~L~~Q~~ 118 (375)
+.++++.|+||+|||..+ ..+...+... +..++++ +..+|..++.
T Consensus 183 ~~~Lll~G~~GtGKThLa-~aIa~~l~~~---g~~V~y~-t~~~l~~~l~ 227 (329)
T PRK06835 183 NENLLFYGNTGTGKTFLS-NCIAKELLDR---GKSVIYR-TADELIEILR 227 (329)
T ss_pred CCcEEEECCCCCcHHHHH-HHHHHHHHHC---CCeEEEE-EHHHHHHHHH
Confidence 478999999999999854 3344444432 2245544 4455555443
No 247
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=95.99 E-value=0.029 Score=53.54 Aligned_cols=76 Identities=18% Similarity=0.274 Sum_probs=47.0
Q ss_pred CCCCEEEECCCCCchHHHhHHHHHHHhhhcccCCceEEEEcccHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHH
Q 017196 68 FERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEIS 146 (375)
Q Consensus 68 ~~~~~ii~a~TGsGKTl~~~l~il~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 146 (375)
.++.+.+.+|||.|||.+.+=-+.......+ +..-+||-+-|.-.. ....++.++.-.++.+..+.+...+.....
T Consensus 202 ~~~vi~LVGPTGVGKTTTlAKLAar~~~~~~-~~kVaiITtDtYRIG--A~EQLk~Ya~im~vp~~vv~~~~el~~ai~ 277 (407)
T COG1419 202 QKRVIALVGPTGVGKTTTLAKLAARYVMLKK-KKKVAIITTDTYRIG--AVEQLKTYADIMGVPLEVVYSPKELAEAIE 277 (407)
T ss_pred cCcEEEEECCCCCcHHHHHHHHHHHHHhhcc-CcceEEEEeccchhh--HHHHHHHHHHHhCCceEEecCHHHHHHHHH
Confidence 3677999999999999986544444442222 223477777665432 233444455555788888877765555543
No 248
>TIGR01547 phage_term_2 phage terminase, large subunit, PBSX family. This model detects members of a highly divergent family of the large subunit of phage terminase. All members are encoded by phage genomes or within prophage regions of bacterial genomes. This is a distinct family from pfam03354.
Probab=95.98 E-value=0.048 Score=52.97 Aligned_cols=59 Identities=19% Similarity=0.241 Sum_probs=43.9
Q ss_pred CEEEECCCCCchHHHhHHHHHHHhhhcccCCceEEEEcccHH-HHHHHHHHHHHhccccCc
Q 017196 71 DLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRD-LALQVKDVFAAIAPAVGL 130 (375)
Q Consensus 71 ~~ii~a~TGsGKTl~~~l~il~~l~~~~~~~~~~lil~Pt~~-L~~Q~~~~~~~~~~~~~~ 130 (375)
-.++.++.|||||.+.++-++..+... .++.+++++-++.. +-+-++..++.....+++
T Consensus 3 ~~i~~GgrgSGKS~~~~~~~~~~~~~~-~~~~~~~~~r~~~~sl~~sv~~~l~~~i~~~g~ 62 (396)
T TIGR01547 3 EIIAKGGRRSGKTFAIALKLVEKLAIN-KKQQNILAARKVQNSIRDSVFKDIENLLSIEGI 62 (396)
T ss_pred eEEEeCCCCcccHHHHHHHHHHHHHhc-CCCcEEEEEehhhhHHHHHHHHHHHHHHHHcCC
Confidence 367889999999999887777777664 13357999989888 555677777766655554
No 249
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.98 E-value=0.058 Score=54.86 Aligned_cols=23 Identities=26% Similarity=0.387 Sum_probs=17.2
Q ss_pred CCccEEEEecchhhhhHhHHhHH
Q 017196 196 EHLCYLVVDETDRLLREAYQAWL 218 (375)
Q Consensus 196 ~~~~~vIiDE~h~l~~~~~~~~l 218 (375)
...+++||||+|+|-...+...+
T Consensus 123 gr~KViIIDEah~Ls~~AaNALL 145 (700)
T PRK12323 123 GRFKVYMIDEVHMLTNHAFNAML 145 (700)
T ss_pred CCceEEEEEChHhcCHHHHHHHH
Confidence 46789999999999666654433
No 250
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=95.98 E-value=0.12 Score=45.85 Aligned_cols=19 Identities=21% Similarity=0.307 Sum_probs=15.9
Q ss_pred CCCCEEEECCCCCchHHHh
Q 017196 68 FERDLCINSPTGSGKTLSY 86 (375)
Q Consensus 68 ~~~~~ii~a~TGsGKTl~~ 86 (375)
.+..+++.+++|+|||..+
T Consensus 41 ~~~~~~l~G~~G~GKT~La 59 (227)
T PRK08903 41 ADRFFYLWGEAGSGRSHLL 59 (227)
T ss_pred CCCeEEEECCCCCCHHHHH
Confidence 4567999999999999743
No 251
>TIGR01073 pcrA ATP-dependent DNA helicase PcrA. Designed to identify pcrA members of the uvrD/rep subfamily.
Probab=95.98 E-value=0.038 Score=58.13 Aligned_cols=72 Identities=24% Similarity=0.224 Sum_probs=55.3
Q ss_pred CCccHhhHHHHHHhhCCCCCCCCEEEECCCCCchHHHhHHHHHHHhhhcccCCceEEEEcccHHHHHHHHHHHHHhcc
Q 017196 49 SSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAP 126 (375)
Q Consensus 49 ~~~~~~Q~~~~~~~~~~~~~~~~~ii~a~TGsGKTl~~~l~il~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~ 126 (375)
..+++-|.+|+.+ ....++|.|+-|||||.+.+--+...+........++++++-|+.-|.++...+.++..
T Consensus 3 ~~Ln~~Q~~av~~------~~g~~lV~AgaGSGKT~~l~~ria~Li~~~~i~P~~IL~lTFT~kAA~em~~Rl~~~~~ 74 (726)
T TIGR01073 3 AHLNPEQREAVKT------TEGPLLIMAGAGSGKTRVLTHRIAHLIAEKNVAPWNILAITFTNKAAREMKERVEKLLG 74 (726)
T ss_pred cccCHHHHHHHhC------CCCCEEEEeCCCCCHHHHHHHHHHHHHHcCCCCHHHeeeeeccHHHHHHHHHHHHHHhc
Confidence 3589999998532 34579999999999999866655555544333445799999999999999999987754
No 252
>PF05127 Helicase_RecD: Helicase; InterPro: IPR007807 This domain is about 350 amino acid residues long and appears to have a P-loop motif, suggesting this is an ATPase. This domain is often N-terminal to a GCN5-related N-acetyltransferase domain IPR000182 from INTERPRO and C-terminal to IPR013562 from INTERPRO.; PDB: 2ZPA_B.
Probab=95.97 E-value=0.0027 Score=53.93 Aligned_cols=51 Identities=16% Similarity=0.248 Sum_probs=26.2
Q ss_pred EEECCCCCchHHHhHHHHHHHhhhcccCCceEEEEcccHHHHHHHHHHHHHhcc
Q 017196 73 CINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAP 126 (375)
Q Consensus 73 ii~a~TGsGKTl~~~l~il~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~ 126 (375)
++.|+-|-|||.+.-+.+...+.... .+++|.+|+.+-++.+++.+..-..
T Consensus 1 VltA~RGRGKSa~lGl~~a~l~~~~~---~~I~vtAP~~~~~~~lf~~~~~~l~ 51 (177)
T PF05127_consen 1 VLTADRGRGKSAALGLAAAALIQKGK---IRILVTAPSPENVQTLFEFAEKGLK 51 (177)
T ss_dssp -EEE-TTSSHHHHHHHCCCCSSS--------EEEE-SS--S-HHHHHCC-----
T ss_pred CccCCCCCCHHHHHHHHHHHHHHhcC---ceEEEecCCHHHHHHHHHHHHhhcc
Confidence 57899999999875554444333331 4699999999987777776655444
No 253
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.94 E-value=0.074 Score=50.87 Aligned_cols=71 Identities=13% Similarity=0.153 Sum_probs=36.3
Q ss_pred CCCCEEEECCCCCchHHHhHHHHHHHhhhcccCCceEEEEc-ccHHHHHHHHHHHHHhccccCceEEEeecCCchH
Q 017196 68 FERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVL-PTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIA 142 (375)
Q Consensus 68 ~~~~~ii~a~TGsGKTl~~~l~il~~l~~~~~~~~~~lil~-Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~~~~~~~ 142 (375)
.|..+++.+|||+|||....--+...+...+. .++.+++ .+... --...++.++...++.+..+.......
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~--~~V~lit~D~~R~--ga~EqL~~~a~~~gv~~~~~~~~~~l~ 207 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAARCVMRFGA--SKVALLTTDSYRI--GGHEQLRIFGKILGVPVHAVKDGGDLQ 207 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCC--CeEEEEecccccc--cHHHHHHHHHHHcCCceEecCCcccHH
Confidence 46679999999999998754434333333211 1343333 22110 112333333344466666655554443
No 254
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=95.93 E-value=0.13 Score=42.43 Aligned_cols=38 Identities=21% Similarity=0.292 Sum_probs=23.0
Q ss_pred EEEECCCCCchHHHhHHHHHHHhhhcccCCceEEEEcccHHH
Q 017196 72 LCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDL 113 (375)
Q Consensus 72 ~ii~a~TGsGKTl~~~l~il~~l~~~~~~~~~~lil~Pt~~L 113 (375)
++|.+++|+|||..+.. +...... .+..++++......
T Consensus 2 ~~i~G~~G~GKT~l~~~-i~~~~~~---~~~~v~~~~~e~~~ 39 (165)
T cd01120 2 ILVFGPTGSGKTTLALQ-LALNIAT---KGGKVVYVDIEEEI 39 (165)
T ss_pred eeEeCCCCCCHHHHHHH-HHHHHHh---cCCEEEEEECCcch
Confidence 57899999999985433 3222222 23357777655443
No 255
>PRK08084 DNA replication initiation factor; Provisional
Probab=95.92 E-value=0.078 Score=47.53 Aligned_cols=19 Identities=16% Similarity=0.239 Sum_probs=15.7
Q ss_pred CCCCEEEECCCCCchHHHh
Q 017196 68 FERDLCINSPTGSGKTLSY 86 (375)
Q Consensus 68 ~~~~~ii~a~TGsGKTl~~ 86 (375)
.+..+++.+|+|+|||...
T Consensus 44 ~~~~l~l~Gp~G~GKThLl 62 (235)
T PRK08084 44 HSGYIYLWSREGAGRSHLL 62 (235)
T ss_pred CCCeEEEECCCCCCHHHHH
Confidence 4467999999999999753
No 256
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=95.89 E-value=0.082 Score=52.18 Aligned_cols=49 Identities=18% Similarity=0.208 Sum_probs=29.1
Q ss_pred CCEEEECCCCCchHHHhHHHHHHHhhhcccCCceEEEEcccHHHHHHHHHHH
Q 017196 70 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVF 121 (375)
Q Consensus 70 ~~~ii~a~TGsGKTl~~~l~il~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~~ 121 (375)
..+++.|++|+|||.. +-.+.+.+... .++.+++++.. .++..+....+
T Consensus 142 npl~i~G~~G~GKTHL-l~Ai~~~l~~~-~~~~~v~yv~~-~~f~~~~~~~l 190 (450)
T PRK14087 142 NPLFIYGESGMGKTHL-LKAAKNYIESN-FSDLKVSYMSG-DEFARKAVDIL 190 (450)
T ss_pred CceEEECCCCCcHHHH-HHHHHHHHHHh-CCCCeEEEEEH-HHHHHHHHHHH
Confidence 3488999999999964 23444444432 23345666555 45555544444
No 257
>PLN03025 replication factor C subunit; Provisional
Probab=95.86 E-value=0.087 Score=49.57 Aligned_cols=18 Identities=39% Similarity=0.656 Sum_probs=15.0
Q ss_pred CCEEEECCCCCchHHHhH
Q 017196 70 RDLCINSPTGSGKTLSYA 87 (375)
Q Consensus 70 ~~~ii~a~TGsGKTl~~~ 87 (375)
.++++.||.|+|||..+.
T Consensus 35 ~~lll~Gp~G~GKTtla~ 52 (319)
T PLN03025 35 PNLILSGPPGTGKTTSIL 52 (319)
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 468999999999997643
No 258
>PRK08116 hypothetical protein; Validated
Probab=95.86 E-value=0.12 Score=47.43 Aligned_cols=45 Identities=22% Similarity=0.281 Sum_probs=27.4
Q ss_pred CCEEEECCCCCchHHHhHHHHHHHhhhcccCCceEEEEcccHHHHHHHHH
Q 017196 70 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKD 119 (375)
Q Consensus 70 ~~~ii~a~TGsGKTl~~~l~il~~l~~~~~~~~~~lil~Pt~~L~~Q~~~ 119 (375)
..+++.+++|+|||..+. .+.+.+.... ..++ .++..++..++..
T Consensus 115 ~gl~l~G~~GtGKThLa~-aia~~l~~~~---~~v~-~~~~~~ll~~i~~ 159 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAA-CIANELIEKG---VPVI-FVNFPQLLNRIKS 159 (268)
T ss_pred ceEEEECCCCCCHHHHHH-HHHHHHHHcC---CeEE-EEEHHHHHHHHHH
Confidence 349999999999998643 4555554431 2344 4455555554433
No 259
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=95.85 E-value=0.099 Score=50.95 Aligned_cols=42 Identities=19% Similarity=0.144 Sum_probs=25.6
Q ss_pred CEEEECCCCCchHHHhHHHHHHHhhhcccCCceEEEEcccHHHHH
Q 017196 71 DLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLAL 115 (375)
Q Consensus 71 ~~ii~a~TGsGKTl~~~l~il~~l~~~~~~~~~~lil~Pt~~L~~ 115 (375)
.+++.|++|+|||... -.+.+.+... .++.+++++.. .++..
T Consensus 138 ~l~l~G~~G~GKThL~-~ai~~~l~~~-~~~~~v~yi~~-~~~~~ 179 (405)
T TIGR00362 138 PLFIYGGVGLGKTHLL-HAIGNEILEN-NPNAKVVYVSS-EKFTN 179 (405)
T ss_pred eEEEECCCCCcHHHHH-HHHHHHHHHh-CCCCcEEEEEH-HHHHH
Confidence 4789999999999853 3444444433 23345777643 34433
No 260
>PRK05973 replicative DNA helicase; Provisional
Probab=95.85 E-value=0.22 Score=44.60 Aligned_cols=85 Identities=18% Similarity=0.101 Sum_probs=51.7
Q ss_pred CCHHHHHHHHhCCCCCccHhhHHH-----HHHhhCCCCCCCCEEEECCCCCchHHHhHHHHHHHhhhcccCCceEEEEcc
Q 017196 35 LDPRLKVALQNMGISSLFPVQVAV-----WQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLP 109 (375)
Q Consensus 35 l~~~i~~~l~~~g~~~~~~~Q~~~-----~~~~~~~~~~~~~~ii~a~TGsGKTl~~~l~il~~l~~~~~~~~~~lil~P 109 (375)
+++.+-+.-.+.||..-.-.+..+ .+.+...+..|.-++|.|++|+|||.-++--+.+....+ -+++|++-
T Consensus 25 ~~~~~~~~a~~~g~~~w~~~~~~~~~~~p~~~l~GGl~~Gsl~LIaG~PG~GKT~lalqfa~~~a~~G----e~vlyfSl 100 (237)
T PRK05973 25 LHEALDRIAAEEGFSSWSLLAAKAAATTPAEELFSQLKPGDLVLLGARPGHGKTLLGLELAVEAMKSG----RTGVFFTL 100 (237)
T ss_pred HHHHHHHHHHHhccchHHHHHHhccCCCCHHHhcCCCCCCCEEEEEeCCCCCHHHHHHHHHHHHHhcC----CeEEEEEE
Confidence 777777777777875322222221 223355666777889999999999976544444444332 24677653
Q ss_pred cHHHHHHHHHHHHHh
Q 017196 110 TRDLALQVKDVFAAI 124 (375)
Q Consensus 110 t~~L~~Q~~~~~~~~ 124 (375)
- +-.+|+.+.+..+
T Consensus 101 E-es~~~i~~R~~s~ 114 (237)
T PRK05973 101 E-YTEQDVRDRLRAL 114 (237)
T ss_pred e-CCHHHHHHHHHHc
Confidence 2 3346777777766
No 261
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.77 E-value=0.12 Score=49.49 Aligned_cols=22 Identities=32% Similarity=0.424 Sum_probs=17.3
Q ss_pred CCEEEECCCCCchHHHhHHHHH
Q 017196 70 RDLCINSPTGSGKTLSYALPIV 91 (375)
Q Consensus 70 ~~~ii~a~TGsGKTl~~~l~il 91 (375)
+.+.+.+|||+|||.....-+.
T Consensus 242 ~vI~LVGptGvGKTTTiaKLA~ 263 (436)
T PRK11889 242 QTIALIGPTGVGKTTTLAKMAW 263 (436)
T ss_pred cEEEEECCCCCcHHHHHHHHHH
Confidence 5688999999999987654443
No 262
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=95.74 E-value=0.14 Score=52.00 Aligned_cols=47 Identities=19% Similarity=0.123 Sum_probs=26.8
Q ss_pred CEEEECCCCCchHHHhHHHHHHHhhhcccCCceEEEEcccHHHHHHHHHH
Q 017196 71 DLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDV 120 (375)
Q Consensus 71 ~~ii~a~TGsGKTl~~~l~il~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~ 120 (375)
.++|.+++|+|||... -.+.+.+... ..+.+++++. ..+++.+....
T Consensus 316 pL~LyG~sGsGKTHLL-~AIa~~a~~~-~~g~~V~Yit-aeef~~el~~a 362 (617)
T PRK14086 316 PLFIYGESGLGKTHLL-HAIGHYARRL-YPGTRVRYVS-SEEFTNEFINS 362 (617)
T ss_pred cEEEECCCCCCHHHHH-HHHHHHHHHh-CCCCeEEEee-HHHHHHHHHHH
Confidence 3889999999999742 3344444332 1233565554 44555544433
No 263
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=95.73 E-value=0.039 Score=56.45 Aligned_cols=24 Identities=25% Similarity=0.401 Sum_probs=17.7
Q ss_pred CCccEEEEecchhhhhHhHHhHHH
Q 017196 196 EHLCYLVVDETDRLLREAYQAWLP 219 (375)
Q Consensus 196 ~~~~~vIiDE~h~l~~~~~~~~l~ 219 (375)
...+++||||+|+|-...+...+.
T Consensus 118 g~~KV~IIDEah~Ls~~a~NALLK 141 (647)
T PRK07994 118 GRFKVYLIDEVHMLSRHSFNALLK 141 (647)
T ss_pred CCCEEEEEechHhCCHHHHHHHHH
Confidence 467799999999987666544444
No 264
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=95.71 E-value=0.074 Score=50.21 Aligned_cols=16 Identities=44% Similarity=0.723 Sum_probs=14.4
Q ss_pred CEEEECCCCCchHHHh
Q 017196 71 DLCINSPTGSGKTLSY 86 (375)
Q Consensus 71 ~~ii~a~TGsGKTl~~ 86 (375)
.+++.+|+|+|||..+
T Consensus 38 ~lll~Gp~GtGKT~la 53 (337)
T PRK12402 38 HLLVQGPPGSGKTAAV 53 (337)
T ss_pred eEEEECCCCCCHHHHH
Confidence 6999999999999864
No 265
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=95.66 E-value=0.1 Score=46.13 Aligned_cols=19 Identities=32% Similarity=0.316 Sum_probs=16.2
Q ss_pred CCCCEEEECCCCCchHHHh
Q 017196 68 FERDLCINSPTGSGKTLSY 86 (375)
Q Consensus 68 ~~~~~ii~a~TGsGKTl~~ 86 (375)
.+..+++.+++|+|||..+
T Consensus 37 ~~~~lll~G~~G~GKT~la 55 (226)
T TIGR03420 37 GDRFLYLWGESGSGKSHLL 55 (226)
T ss_pred CCCeEEEECCCCCCHHHHH
Confidence 4578999999999999754
No 266
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=95.63 E-value=0.036 Score=52.04 Aligned_cols=66 Identities=20% Similarity=0.248 Sum_probs=43.6
Q ss_pred HHHHhCCCCCccHhhHHHHHHhhCCCCCCCCEEEECCCCCchHHHhHHHHHHHhhhcccCCceEEEEcccHHH
Q 017196 41 VALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDL 113 (375)
Q Consensus 41 ~~l~~~g~~~~~~~Q~~~~~~~~~~~~~~~~~ii~a~TGsGKTl~~~l~il~~l~~~~~~~~~~lil~Pt~~L 113 (375)
+.+.+.|. +++.|.+.+..++. .+++++|+++||||||. ++-.++..+... .+..+++++-.+.|+
T Consensus 125 ~~l~~~g~--~~~~~~~~L~~~v~---~~~~ilI~G~tGSGKTT-ll~aL~~~~~~~-~~~~rivtIEd~~El 190 (319)
T PRK13894 125 DQYVERGI--MTAAQREAIIAAVR---AHRNILVIGGTGSGKTT-LVNAIINEMVIQ-DPTERVFIIEDTGEI 190 (319)
T ss_pred HHHHhcCC--CCHHHHHHHHHHHH---cCCeEEEECCCCCCHHH-HHHHHHHhhhhc-CCCceEEEEcCCCcc
Confidence 44445564 56778777766664 67899999999999995 344444443221 123468888887776
No 267
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.63 E-value=0.064 Score=53.73 Aligned_cols=22 Identities=18% Similarity=0.300 Sum_probs=16.7
Q ss_pred CCccEEEEecchhhhhHhHHhH
Q 017196 196 EHLCYLVVDETDRLLREAYQAW 217 (375)
Q Consensus 196 ~~~~~vIiDE~h~l~~~~~~~~ 217 (375)
...+++||||+|+|-...+...
T Consensus 118 ~~~kV~iIDE~~~ls~~a~naL 139 (509)
T PRK14958 118 GRFKVYLIDEVHMLSGHSFNAL 139 (509)
T ss_pred CCcEEEEEEChHhcCHHHHHHH
Confidence 3568999999998876665443
No 268
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=95.62 E-value=0.042 Score=51.52 Aligned_cols=65 Identities=22% Similarity=0.257 Sum_probs=43.4
Q ss_pred HHHhCCCCCccHhhHHHHHHhhCCCCCCCCEEEECCCCCchHHHhHHHHHHHhhhcccCCceEEEEcccHHH
Q 017196 42 ALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDL 113 (375)
Q Consensus 42 ~l~~~g~~~~~~~Q~~~~~~~~~~~~~~~~~ii~a~TGsGKTl~~~l~il~~l~~~~~~~~~~lil~Pt~~L 113 (375)
.+.+.|. +++.|...+..++. .+.+++|+++||||||.. +-.++..+... .+.-+++.+-.+.||
T Consensus 122 ~lv~~g~--~~~~~~~~L~~~v~---~~~nilI~G~tGSGKTTl-l~aL~~~i~~~-~~~~rivtiEd~~El 186 (323)
T PRK13833 122 DYVTSKI--MTEAQASVIRSAID---SRLNIVISGGTGSGKTTL-ANAVIAEIVAS-APEDRLVILEDTAEI 186 (323)
T ss_pred HHHHcCC--CCHHHHHHHHHHHH---cCCeEEEECCCCCCHHHH-HHHHHHHHhcC-CCCceEEEecCCccc
Confidence 3444553 56778877766665 678999999999999974 34444544322 123467887777776
No 269
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.59 E-value=0.065 Score=50.64 Aligned_cols=16 Identities=38% Similarity=0.704 Sum_probs=14.5
Q ss_pred CCEEEECCCCCchHHH
Q 017196 70 RDLCINSPTGSGKTLS 85 (375)
Q Consensus 70 ~~~ii~a~TGsGKTl~ 85 (375)
+.+++.+|.|||||+.
T Consensus 246 kgvLm~GPPGTGKTlL 261 (491)
T KOG0738|consen 246 KGVLMVGPPGTGKTLL 261 (491)
T ss_pred ceeeeeCCCCCcHHHH
Confidence 6799999999999984
No 270
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=95.59 E-value=0.051 Score=49.97 Aligned_cols=48 Identities=17% Similarity=0.199 Sum_probs=28.3
Q ss_pred CCEEEECCCCCchHHHhHHHHHHHhhhcc--------cCCceEEEEcccHHHHHHHHHHHH
Q 017196 70 RDLCINSPTGSGKTLSYALPIVQTLSNRA--------VRCLRALVVLPTRDLALQVKDVFA 122 (375)
Q Consensus 70 ~~~ii~a~TGsGKTl~~~l~il~~l~~~~--------~~~~~~lil~Pt~~L~~Q~~~~~~ 122 (375)
.++++.++||.|||.. ++++.+.- ...|-+++-+|...-....|..+-
T Consensus 62 p~lLivG~snnGKT~I-----i~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL 117 (302)
T PF05621_consen 62 PNLLIVGDSNNGKTMI-----IERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAIL 117 (302)
T ss_pred CceEEecCCCCcHHHH-----HHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHH
Confidence 4799999999999973 34443321 112345555666554444555443
No 271
>PHA03368 DNA packaging terminase subunit 1; Provisional
Probab=95.53 E-value=0.19 Score=51.12 Aligned_cols=58 Identities=17% Similarity=0.133 Sum_probs=44.0
Q ss_pred CCCCEEEECCCCCchHHHhHHHHHHHhhhcccCCceEEEEcccHHHHHHHHHHHHHhccc
Q 017196 68 FERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPA 127 (375)
Q Consensus 68 ~~~~~ii~a~TGsGKTl~~~l~il~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~ 127 (375)
+.+--++..|--.|||+... +++..+... ..+.++++.+|.+..++..++++......
T Consensus 253 kqk~tVflVPRR~GKTwivv-~iI~~ll~s-~~Gi~IgytAH~~~ts~~vF~eI~~~le~ 310 (738)
T PHA03368 253 RQRATVFLVPRRHGKTWFLV-PLIALALAT-FRGIKIGYTAHIRKATEPVFEEIGARLRQ 310 (738)
T ss_pred hccceEEEecccCCchhhHH-HHHHHHHHh-CCCCEEEEEcCcHHHHHHHHHHHHHHHhh
Confidence 35567888999999999654 555544432 23558999999999999999999887653
No 272
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=95.53 E-value=0.087 Score=53.73 Aligned_cols=21 Identities=19% Similarity=0.303 Sum_probs=16.9
Q ss_pred CCEEEECCCCCchHHHhHHHH
Q 017196 70 RDLCINSPTGSGKTLSYALPI 90 (375)
Q Consensus 70 ~~~ii~a~TGsGKTl~~~l~i 90 (375)
+.+++.+|.|+|||..+.+.+
T Consensus 47 ha~L~~Gp~GvGKTt~Ar~lA 67 (598)
T PRK09111 47 QAFMLTGVRGVGKTTTARILA 67 (598)
T ss_pred ceEEEECCCCCCHHHHHHHHH
Confidence 468999999999998765533
No 273
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=95.52 E-value=0.25 Score=46.60 Aligned_cols=45 Identities=18% Similarity=0.210 Sum_probs=30.9
Q ss_pred ccHhhHHHHHHhhCCCCC-CCCEEEECCCCCchHHHhHHHHHHHhhh
Q 017196 51 LFPVQVAVWQETIGPGLF-ERDLCINSPTGSGKTLSYALPIVQTLSN 96 (375)
Q Consensus 51 ~~~~Q~~~~~~~~~~~~~-~~~~ii~a~TGsGKTl~~~l~il~~l~~ 96 (375)
.+|||+.+|+.+...... ..-.++.+|.|+|||..+.. +...+.+
T Consensus 2 ~yPW~~~~w~~l~~~~~r~~hA~Lf~G~~G~GK~~la~~-~a~~llC 47 (325)
T PRK08699 2 IYPWHQEQWRQIAEHWERRPNAWLFAGKKGIGKTAFARF-AAQALLC 47 (325)
T ss_pred CCCccHHHHHHHHHhcCCcceEEEeECCCCCCHHHHHHH-HHHHHcC
Confidence 378999999998754211 13478999999999976543 4444443
No 274
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=95.48 E-value=0.062 Score=50.02 Aligned_cols=66 Identities=23% Similarity=0.289 Sum_probs=43.4
Q ss_pred HHHHhCCCCCccHhhHHHHHHhhCCCCCCCCEEEECCCCCchHHHhHHHHHHHhhhcccCCceEEEEcccHHH
Q 017196 41 VALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDL 113 (375)
Q Consensus 41 ~~l~~~g~~~~~~~Q~~~~~~~~~~~~~~~~~ii~a~TGsGKTl~~~l~il~~l~~~~~~~~~~lil~Pt~~L 113 (375)
+.+.+.| .+++.|...+..++. .+++++|+++||||||.. +-.++..+... .+..+++.+-.+.|+
T Consensus 109 ~~l~~~g--~~~~~~~~~L~~~v~---~~~~ilI~G~tGSGKTTl-l~al~~~i~~~-~~~~ri~tiEd~~El 174 (299)
T TIGR02782 109 DDYVEAG--IMTAAQRDVLREAVL---ARKNILVVGGTGSGKTTL-ANALLAEIAKN-DPTDRVVIIEDTREL 174 (299)
T ss_pred HHHHhcC--CCCHHHHHHHHHHHH---cCCeEEEECCCCCCHHHH-HHHHHHHhhcc-CCCceEEEECCchhh
Confidence 4444455 355666666666654 678999999999999974 34455555432 123478888888886
No 275
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=95.47 E-value=0.16 Score=50.03 Aligned_cols=38 Identities=24% Similarity=0.211 Sum_probs=24.3
Q ss_pred CCEEEECCCCCchHHHhHHHHHHHhhhcccCCceEEEEcc
Q 017196 70 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLP 109 (375)
Q Consensus 70 ~~~ii~a~TGsGKTl~~~l~il~~l~~~~~~~~~~lil~P 109 (375)
..+++.||+|+|||..+ -.+.+.+... .++.+++++..
T Consensus 131 n~l~lyG~~G~GKTHLl-~ai~~~l~~~-~~~~~v~yi~~ 168 (440)
T PRK14088 131 NPLFIYGGVGLGKTHLL-QSIGNYVVQN-EPDLRVMYITS 168 (440)
T ss_pred CeEEEEcCCCCcHHHHH-HHHHHHHHHh-CCCCeEEEEEH
Confidence 35899999999999853 3444444432 23345777654
No 276
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=95.46 E-value=0.12 Score=49.00 Aligned_cols=46 Identities=17% Similarity=0.224 Sum_probs=34.4
Q ss_pred CccHhhHHHHHHhhCCCCCCC---CEEEECCCCCchHHHhHHHHHHHhhh
Q 017196 50 SLFPVQVAVWQETIGPGLFER---DLCINSPTGSGKTLSYALPIVQTLSN 96 (375)
Q Consensus 50 ~~~~~Q~~~~~~~~~~~~~~~---~~ii~a~TGsGKTl~~~l~il~~l~~ 96 (375)
..+|||...|+.+...+..|+ -.++.+|.|+||+..+ ..+...+.+
T Consensus 2 ~~yPWl~~~~~~l~~~~~~~rl~HA~Lf~G~~G~Gk~~lA-~~~A~~LlC 50 (334)
T PRK07993 2 KWYPWLRPDYEQLVGSYQAGRGHHALLIQALPGMGDDALI-YALSRWLMC 50 (334)
T ss_pred CCCCCChHHHHHHHHHHHcCCcceEEeeECCCCCCHHHHH-HHHHHHHcC
Confidence 367999999999987665654 5789999999999764 444455544
No 277
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=95.42 E-value=0.034 Score=53.24 Aligned_cols=26 Identities=27% Similarity=0.371 Sum_probs=19.1
Q ss_pred CCCEEEECCCCCchHHHhHHHHHHHhh
Q 017196 69 ERDLCINSPTGSGKTLSYALPIVQTLS 95 (375)
Q Consensus 69 ~~~~ii~a~TGsGKTl~~~l~il~~l~ 95 (375)
..+++|.+|+|+|||.+. -.++..+.
T Consensus 40 ~~~i~I~G~~GtGKT~l~-~~~~~~l~ 65 (365)
T TIGR02928 40 PSNVFIYGKTGTGKTAVT-KYVMKELE 65 (365)
T ss_pred CCcEEEECCCCCCHHHHH-HHHHHHHH
Confidence 357999999999999753 44555443
No 278
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.41 E-value=0.11 Score=53.14 Aligned_cols=20 Identities=20% Similarity=0.220 Sum_probs=16.0
Q ss_pred CCEEEECCCCCchHHHhHHH
Q 017196 70 RDLCINSPTGSGKTLSYALP 89 (375)
Q Consensus 70 ~~~ii~a~TGsGKTl~~~l~ 89 (375)
+-+++.||.|+|||.++.+-
T Consensus 38 HAyLF~GPpGvGKTTlAriL 57 (702)
T PRK14960 38 HAYLFTGTRGVGKTTIARIL 57 (702)
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 45699999999999876443
No 279
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=95.39 E-value=0.16 Score=47.52 Aligned_cols=28 Identities=25% Similarity=0.228 Sum_probs=17.5
Q ss_pred CccEEEEecchhhhhHhHHhHHHHHHHh
Q 017196 197 HLCYLVVDETDRLLREAYQAWLPTVLQL 224 (375)
Q Consensus 197 ~~~~vIiDE~h~l~~~~~~~~l~~i~~~ 224 (375)
..++|||||+|.+........+..+++.
T Consensus 100 ~~~vliiDe~d~l~~~~~~~~L~~~le~ 127 (316)
T PHA02544 100 GGKVIIIDEFDRLGLADAQRHLRSFMEA 127 (316)
T ss_pred CCeEEEEECcccccCHHHHHHHHHHHHh
Confidence 4569999999988333334444444443
No 280
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=95.39 E-value=0.043 Score=46.94 Aligned_cols=46 Identities=20% Similarity=0.254 Sum_probs=27.5
Q ss_pred CCCCCEEEECCCCCchHHHhHHHHHHHhhhcccCCceEEEEcccHHHHHHH
Q 017196 67 LFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQV 117 (375)
Q Consensus 67 ~~~~~~ii~a~TGsGKTl~~~l~il~~l~~~~~~~~~~lil~Pt~~L~~Q~ 117 (375)
.+++++++.+++|+|||..+.-.+.+.+.++ ..+++ ++..+|.+++
T Consensus 45 ~~~~~l~l~G~~G~GKThLa~ai~~~~~~~g----~~v~f-~~~~~L~~~l 90 (178)
T PF01695_consen 45 ENGENLILYGPPGTGKTHLAVAIANEAIRKG----YSVLF-ITASDLLDEL 90 (178)
T ss_dssp SC--EEEEEESTTSSHHHHHHHHHHHHHHTT------EEE-EEHHHHHHHH
T ss_pred ccCeEEEEEhhHhHHHHHHHHHHHHHhccCC----cceeE-eecCceeccc
Confidence 3678999999999999987544443444322 23555 4555666554
No 281
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=95.38 E-value=0.044 Score=48.23 Aligned_cols=34 Identities=18% Similarity=0.254 Sum_probs=22.5
Q ss_pred CCCCCccEEEEecchhhhhHhHHhHHHHHHHhhhc
Q 017196 193 FTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRS 227 (375)
Q Consensus 193 ~~~~~~~~vIiDE~h~l~~~~~~~~l~~i~~~l~~ 227 (375)
+.....++||+||||.|-+.. +..+...++....
T Consensus 109 lp~grhKIiILDEADSMT~gA-QQAlRRtMEiyS~ 142 (333)
T KOG0991|consen 109 LPPGRHKIIILDEADSMTAGA-QQALRRTMEIYSN 142 (333)
T ss_pred CCCCceeEEEeeccchhhhHH-HHHHHHHHHHHcc
Confidence 334678899999999995543 4445555555443
No 282
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=95.34 E-value=0.2 Score=48.98 Aligned_cols=28 Identities=18% Similarity=0.389 Sum_probs=21.7
Q ss_pred HHhhCCCCCCCCEEEECCCCCchHHHhH
Q 017196 60 QETIGPGLFERDLCINSPTGSGKTLSYA 87 (375)
Q Consensus 60 ~~~~~~~~~~~~~ii~a~TGsGKTl~~~ 87 (375)
+.++..+..++++++.+|+|+|||..+.
T Consensus 185 e~l~~~L~~~~~iil~GppGtGKT~lA~ 212 (459)
T PRK11331 185 ETILKRLTIKKNIILQGPPGVGKTFVAR 212 (459)
T ss_pred HHHHHHHhcCCCEEEECCCCCCHHHHHH
Confidence 3345555578999999999999998653
No 283
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=95.34 E-value=0.2 Score=44.86 Aligned_cols=57 Identities=14% Similarity=0.063 Sum_probs=38.5
Q ss_pred CCCCCCCEEEECCCCCchHHHhHHHHHHHhhhcccCCceEEEEcccHHHHHHHHHHHHHhcc
Q 017196 65 PGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAP 126 (375)
Q Consensus 65 ~~~~~~~~ii~a~TGsGKTl~~~l~il~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~ 126 (375)
.+..|..++|.+++|+|||.-++--+.+.+.++ -+++|++ +.+-..|+.+.+..+..
T Consensus 17 G~~~gs~~lI~G~pGsGKT~la~~~l~~~~~~g----e~~lyvs-~ee~~~~i~~~~~~~g~ 73 (237)
T TIGR03877 17 GIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMG----EPGIYVA-LEEHPVQVRRNMAQFGW 73 (237)
T ss_pred CCcCCeEEEEEcCCCCCHHHHHHHHHHHHHHcC----CcEEEEE-eeCCHHHHHHHHHHhCC
Confidence 455778899999999999985544344444332 2577777 44556677777776643
No 284
>PRK14712 conjugal transfer nickase/helicase TraI; Provisional
Probab=95.29 E-value=0.12 Score=57.84 Aligned_cols=64 Identities=20% Similarity=0.200 Sum_probs=44.6
Q ss_pred CccHhhHHHHHHhhCCCCCCCCEEEECCCCCchHHHh--HHHHHHHhhhcccCCceEEEEcccHHHHHHH
Q 017196 50 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSY--ALPIVQTLSNRAVRCLRALVVLPTRDLALQV 117 (375)
Q Consensus 50 ~~~~~Q~~~~~~~~~~~~~~~~~ii~a~TGsGKTl~~--~l~il~~l~~~~~~~~~~lil~Pt~~L~~Q~ 117 (375)
.+++-|.+|+..++.. .++.++|.+.-|+|||... ++.++..+... .+..++.++||..-+..+
T Consensus 835 ~Lt~~Qr~Av~~iLts--~dr~~~IqG~AGTGKTT~l~~i~~~~~~l~e~--~g~~V~glAPTgkAa~~L 900 (1623)
T PRK14712 835 KLTSGQRAATRMILET--SDRFTVVQGYAGVGKTTQFRAVMSAVNMLPES--ERPRVVGLGPTHRAVGEM 900 (1623)
T ss_pred ccCHHHHHHHHHHHhC--CCceEEEEeCCCCCHHHHHHHHHHHHHHHhhc--cCceEEEEechHHHHHHH
Confidence 7999999998877631 3467899999999999863 22223322222 345688999998766555
No 285
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=95.26 E-value=0.26 Score=43.79 Aligned_cols=62 Identities=13% Similarity=0.052 Sum_probs=35.9
Q ss_pred HHHhh-CCCCCCCCEEEECCCCCchHHHhHHHHHHHhhhcccCCceEEEEcccHHHHHHHHHHHHHhc
Q 017196 59 WQETI-GPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIA 125 (375)
Q Consensus 59 ~~~~~-~~~~~~~~~ii~a~TGsGKTl~~~l~il~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~ 125 (375)
++.++ ..+..|..+++.+++|+|||..+.--+.+.+... ..++++.- .+..+++.+.++.+.
T Consensus 9 LD~~l~GGi~~G~~~~i~G~~G~GKT~l~~~~~~~~~~~g----~~~~~is~-e~~~~~i~~~~~~~g 71 (229)
T TIGR03881 9 LDKLLEGGIPRGFFVAVTGEPGTGKTIFCLHFAYKGLRDG----DPVIYVTT-EESRESIIRQAAQFG 71 (229)
T ss_pred HHHhhcCCCcCCeEEEEECCCCCChHHHHHHHHHHHHhcC----CeEEEEEc-cCCHHHHHHHHHHhC
Confidence 33444 3455788899999999999975433333333322 24666653 334455555555443
No 286
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=95.24 E-value=0.08 Score=49.40 Aligned_cols=61 Identities=21% Similarity=0.280 Sum_probs=42.9
Q ss_pred CCCCccHhhHHHHHHhhCCCCCCCCEEEECCCCCchHHHhHHHHHHHhhhcccCCceEEEEcccHHHHH
Q 017196 47 GISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLAL 115 (375)
Q Consensus 47 g~~~~~~~Q~~~~~~~~~~~~~~~~~ii~a~TGsGKTl~~~l~il~~l~~~~~~~~~~lil~Pt~~L~~ 115 (375)
.+.+.++-|...+..+.. ...|+++++.||||||.. +-++.... ...-|+|.+--|-||.-
T Consensus 154 ~~gt~~~~~a~~L~~av~---~r~NILisGGTGSGKTTl--LNal~~~i---~~~eRvItiEDtaELql 214 (355)
T COG4962 154 IFGTMIRRAAKFLRRAVG---IRCNILISGGTGSGKTTL--LNALSGFI---DSDERVITIEDTAELQL 214 (355)
T ss_pred HcCCcCHHHHHHHHHHHh---hceeEEEeCCCCCCHHHH--HHHHHhcC---CCcccEEEEeehhhhcc
Confidence 455889999888766664 456999999999999973 33333222 22237999999888743
No 287
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.21 E-value=0.11 Score=54.65 Aligned_cols=24 Identities=25% Similarity=0.277 Sum_probs=17.2
Q ss_pred EEEECCCCCchHHHhHHHHHHHhhh
Q 017196 72 LCINSPTGSGKTLSYALPIVQTLSN 96 (375)
Q Consensus 72 ~ii~a~TGsGKTl~~~l~il~~l~~ 96 (375)
.++.||.|+|||..+-+ +...+.+
T Consensus 41 yLFtGPpGtGKTTLARi-LAk~Lnc 64 (944)
T PRK14949 41 YLFTGTRGVGKTSLARL-FAKGLNC 64 (944)
T ss_pred EEEECCCCCCHHHHHHH-HHHhccC
Confidence 58999999999987544 4444433
No 288
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=95.19 E-value=0.11 Score=47.28 Aligned_cols=133 Identities=14% Similarity=0.051 Sum_probs=64.4
Q ss_pred HHHHhhCCCCCCCCEEEECCCCCchHHHhHHHHHHHhhhcccCCceEEEEcccHHHHHHHHHHHHHhccccCceEEEeec
Q 017196 58 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVG 137 (375)
Q Consensus 58 ~~~~~~~~~~~~~~~ii~a~TGsGKTl~~~l~il~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~~ 137 (375)
.++.++..+..|.-++|.|.+|.|||.- ++-+...+.... +..++|++.=-. .+++..++-.... ++....+..
T Consensus 8 ~LD~~lgG~~~g~L~vi~a~pg~GKT~~-~l~ia~~~a~~~--~~~vly~SlEm~-~~~l~~R~la~~s--~v~~~~i~~ 81 (259)
T PF03796_consen 8 ALDRLLGGLRPGELTVIAARPGVGKTAF-ALQIALNAALNG--GYPVLYFSLEMS-EEELAARLLARLS--GVPYNKIRS 81 (259)
T ss_dssp HHHHHHSSB-TT-EEEEEESTTSSHHHH-HHHHHHHHHHTT--SSEEEEEESSS--HHHHHHHHHHHHH--TSTHHHHHC
T ss_pred HHHHHhcCCCcCcEEEEEecccCCchHH-HHHHHHHHHHhc--CCeEEEEcCCCC-HHHHHHHHHHHhh--cchhhhhhc
Confidence 3445565666777789999999999965 444444443331 235788774211 1233333332221 222222222
Q ss_pred CCchHHHHHHHhhcCccccCccCCchhHHHhhcCCCcEEEe----CcHHHHHHHhhcCCCCCCCccEEEEecchhhhh
Q 017196 138 QSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVA----TPGRLMDHINATRGFTLEHLCYLVVDETDRLLR 211 (375)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiV~----Tp~~l~~~l~~~~~~~~~~~~~vIiDE~h~l~~ 211 (375)
+.....+..++. +....+....-.+.. |++.+.+.++....- ...+++||||=+|.+-.
T Consensus 82 g~l~~~e~~~~~--------------~~~~~l~~~~l~i~~~~~~~~~~i~~~i~~~~~~-~~~~~~v~IDyl~ll~~ 144 (259)
T PF03796_consen 82 GDLSDEEFERLQ--------------AAAEKLSDLPLYIEDTPSLTIDDIESKIRRLKRE-GKKVDVVFIDYLQLLKS 144 (259)
T ss_dssp CGCHHHHHHHHH--------------HHHHHHHTSEEEEEESSS-BHHHHHHHHHHHHHH-STTEEEEEEEEGGGSBT
T ss_pred cccCHHHHHHHH--------------HHHHHHhhCcEEEECCCCCCHHHHHHHHHHHHhh-ccCCCEEEechHHHhcC
Confidence 222222221111 111123333223333 445666666542211 26788999999998854
No 289
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=95.18 E-value=0.15 Score=47.13 Aligned_cols=20 Identities=35% Similarity=0.469 Sum_probs=16.1
Q ss_pred CCCEEEECCCCCchHHHhHH
Q 017196 69 ERDLCINSPTGSGKTLSYAL 88 (375)
Q Consensus 69 ~~~~ii~a~TGsGKTl~~~l 88 (375)
++.+++.+|||+|||.+..-
T Consensus 194 ~~vi~~vGptGvGKTTt~~k 213 (282)
T TIGR03499 194 GGVIALVGPTGVGKTTTLAK 213 (282)
T ss_pred CeEEEEECCCCCCHHHHHHH
Confidence 45688999999999987543
No 290
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=95.18 E-value=0.26 Score=46.55 Aligned_cols=93 Identities=20% Similarity=0.292 Sum_probs=55.8
Q ss_pred ccHhhHHHHHHhhCCCCCCCCEEEECCCCCchHHHhHHHHHHHhhhcc------------------cCCceEEEEcccH-
Q 017196 51 LFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRA------------------VRCLRALVVLPTR- 111 (375)
Q Consensus 51 ~~~~Q~~~~~~~~~~~~~~~~~ii~a~TGsGKTl~~~l~il~~l~~~~------------------~~~~~~lil~Pt~- 111 (375)
.+|||...|+.++..-.-.+-.++.+|.|+|||..+.. +...+.... ...|-..++.|..
T Consensus 4 ~yPWl~~~~~~~~~~~r~~ha~Lf~G~~G~GK~~~A~~-~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~ 82 (328)
T PRK05707 4 IYPWQQSLWQQLAGRGRHPHAYLLHGPAGIGKRALAER-LAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEEA 82 (328)
T ss_pred CCCCcHHHHHHHHHCCCcceeeeeECCCCCCHHHHHHH-HHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccCC
Confidence 58999999999987432334588999999999976433 333443321 1234577777731
Q ss_pred ---HHHHHHHHHHHHhcc---ccCceEEEeecCCchHHH
Q 017196 112 ---DLALQVKDVFAAIAP---AVGLSVGLAVGQSSIADE 144 (375)
Q Consensus 112 ---~L~~Q~~~~~~~~~~---~~~~~v~~~~~~~~~~~~ 144 (375)
--++|+.+..+.+.. ..+-+|..+......+..
T Consensus 83 ~~~i~id~iR~l~~~~~~~~~~~~~kv~iI~~a~~m~~~ 121 (328)
T PRK05707 83 DKTIKVDQVRELVSFVVQTAQLGGRKVVLIEPAEAMNRN 121 (328)
T ss_pred CCCCCHHHHHHHHHHHhhccccCCCeEEEECChhhCCHH
Confidence 134455544433321 225678877666555443
No 291
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=95.17 E-value=0.096 Score=53.76 Aligned_cols=20 Identities=20% Similarity=0.250 Sum_probs=16.3
Q ss_pred CCEEEECCCCCchHHHhHHH
Q 017196 70 RDLCINSPTGSGKTLSYALP 89 (375)
Q Consensus 70 ~~~ii~a~TGsGKTl~~~l~ 89 (375)
+.+|+.+|.|+|||..+.+.
T Consensus 39 Ha~Lf~GP~GvGKTTlAriL 58 (709)
T PRK08691 39 HAYLLTGTRGVGKTTIARIL 58 (709)
T ss_pred eEEEEECCCCCcHHHHHHHH
Confidence 45899999999999876543
No 292
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.13 E-value=0.11 Score=52.37 Aligned_cols=24 Identities=25% Similarity=0.317 Sum_probs=17.3
Q ss_pred CEEEECCCCCchHHHhHHHHHHHhh
Q 017196 71 DLCINSPTGSGKTLSYALPIVQTLS 95 (375)
Q Consensus 71 ~~ii~a~TGsGKTl~~~l~il~~l~ 95 (375)
..++.||.|+|||..+.+ +...+.
T Consensus 40 a~Lf~Gp~GvGKTTlAr~-lAk~L~ 63 (546)
T PRK14957 40 AYLFTGTRGVGKTTLGRL-LAKCLN 63 (546)
T ss_pred EEEEECCCCCCHHHHHHH-HHHHhC
Confidence 378999999999987544 334443
No 293
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=95.12 E-value=0.3 Score=46.93 Aligned_cols=61 Identities=20% Similarity=0.183 Sum_probs=35.8
Q ss_pred HHHhhC-CCCCCCCEEEECCCCCchHHHhHHHHHHHhhhcccCCceEEEEcccHHHHHHHHHHHHHh
Q 017196 59 WQETIG-PGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAI 124 (375)
Q Consensus 59 ~~~~~~-~~~~~~~~ii~a~TGsGKTl~~~l~il~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~ 124 (375)
++.++. .+..|.-+++.+++|+|||... +-+...+... +.+++|+.-- +-..|+...++++
T Consensus 71 LD~vLgGGi~~GslvLI~G~pG~GKStLl-lq~a~~~a~~---g~~VlYvs~E-Es~~qi~~Ra~rl 132 (372)
T cd01121 71 LDRVLGGGLVPGSVILIGGDPGIGKSTLL-LQVAARLAKR---GGKVLYVSGE-ESPEQIKLRADRL 132 (372)
T ss_pred HHHhhcCCccCCeEEEEEeCCCCCHHHHH-HHHHHHHHhc---CCeEEEEECC-cCHHHHHHHHHHc
Confidence 344442 3445677899999999999753 3333333322 2357887643 3345666655554
No 294
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=95.11 E-value=0.083 Score=46.56 Aligned_cols=19 Identities=26% Similarity=0.396 Sum_probs=15.1
Q ss_pred CCEEEECCCCCchHHHhHH
Q 017196 70 RDLCINSPTGSGKTLSYAL 88 (375)
Q Consensus 70 ~~~ii~a~TGsGKTl~~~l 88 (375)
.++++.+|.|+|||..+.+
T Consensus 51 ~h~lf~GPPG~GKTTLA~I 69 (233)
T PF05496_consen 51 DHMLFYGPPGLGKTTLARI 69 (233)
T ss_dssp -EEEEESSTTSSHHHHHHH
T ss_pred ceEEEECCCccchhHHHHH
Confidence 3699999999999985443
No 295
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.10 E-value=0.26 Score=48.90 Aligned_cols=18 Identities=28% Similarity=0.468 Sum_probs=15.0
Q ss_pred CEEEECCCCCchHHHhHH
Q 017196 71 DLCINSPTGSGKTLSYAL 88 (375)
Q Consensus 71 ~~ii~a~TGsGKTl~~~l 88 (375)
.+++.||.|+|||..+-+
T Consensus 38 ~~Lf~GPpGtGKTTlA~~ 55 (472)
T PRK14962 38 AYIFAGPRGTGKTTVARI 55 (472)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 479999999999987544
No 296
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=95.07 E-value=0.3 Score=46.78 Aligned_cols=27 Identities=22% Similarity=0.279 Sum_probs=19.2
Q ss_pred CCEEEECCCCCchHHHhHHHHHHHhhhc
Q 017196 70 RDLCINSPTGSGKTLSYALPIVQTLSNR 97 (375)
Q Consensus 70 ~~~ii~a~TGsGKTl~~~l~il~~l~~~ 97 (375)
.-.++.+|.|+||+..+ ..+...+.+.
T Consensus 42 HA~Lf~Gp~G~GK~~lA-~~~A~~Llc~ 68 (365)
T PRK07471 42 HAWLIGGPQGIGKATLA-YRMARFLLAT 68 (365)
T ss_pred ceEEEECCCCCCHHHHH-HHHHHHHhCC
Confidence 35899999999999764 4455555543
No 297
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.07 E-value=0.043 Score=52.13 Aligned_cols=17 Identities=35% Similarity=0.669 Sum_probs=15.2
Q ss_pred CCEEEECCCCCchHHHh
Q 017196 70 RDLCINSPTGSGKTLSY 86 (375)
Q Consensus 70 ~~~ii~a~TGsGKTl~~ 86 (375)
+|+++.+|.|+|||+.+
T Consensus 385 RNilfyGPPGTGKTm~A 401 (630)
T KOG0742|consen 385 RNILFYGPPGTGKTMFA 401 (630)
T ss_pred hheeeeCCCCCCchHHH
Confidence 68999999999999853
No 298
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=95.04 E-value=0.11 Score=49.41 Aligned_cols=19 Identities=32% Similarity=0.497 Sum_probs=15.7
Q ss_pred CCEEEECCCCCchHHHhHH
Q 017196 70 RDLCINSPTGSGKTLSYAL 88 (375)
Q Consensus 70 ~~~ii~a~TGsGKTl~~~l 88 (375)
.+.|+.+|.|+|||..+-+
T Consensus 49 ~SmIl~GPPG~GKTTlA~l 67 (436)
T COG2256 49 HSMILWGPPGTGKTTLARL 67 (436)
T ss_pred ceeEEECCCCCCHHHHHHH
Confidence 4689999999999986544
No 299
>COG4626 Phage terminase-like protein, large subunit [General function prediction only]
Probab=95.03 E-value=0.31 Score=48.34 Aligned_cols=77 Identities=18% Similarity=0.103 Sum_probs=54.1
Q ss_pred CccHhhHHHHHHhhCCCCCC------CCEEEECCCCCchHHHhH-HHHHHHhhhcccCCceEEEEcccHHHHHHHHHHHH
Q 017196 50 SLFPVQVAVWQETIGPGLFE------RDLCINSPTGSGKTLSYA-LPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFA 122 (375)
Q Consensus 50 ~~~~~Q~~~~~~~~~~~~~~------~~~ii~a~TGsGKTl~~~-l~il~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~~~ 122 (375)
.+.|||...+-.++....++ +-++|-.|-+-|||..++ +.....+... ..+....|++|+.+-+.+.+..++
T Consensus 61 ~l~PwQkFiia~l~G~~~k~T~~rrf~e~fI~v~RkngKt~l~A~i~~~~~l~~~-~~~~~~~i~A~s~~qa~~~F~~ar 139 (546)
T COG4626 61 SLEPWQKFIVAALFGFYDKQTGIRRFKEAFIFIPRKNGKSTLAAGIMMTALLLNW-RSGAGIYILAPSVEQAANSFNPAR 139 (546)
T ss_pred ccchHHHHHHHHHhceeecCCCceEEEEEEEEEecCCchHHHHHHHHHHHHHhhh-hcCCcEEEEeccHHHHHHhhHHHH
Confidence 67899999877776332233 236888899999997654 3333333333 455679999999998888888888
Q ss_pred Hhccc
Q 017196 123 AIAPA 127 (375)
Q Consensus 123 ~~~~~ 127 (375)
.....
T Consensus 140 ~mv~~ 144 (546)
T COG4626 140 DMVKR 144 (546)
T ss_pred HHHHh
Confidence 76543
No 300
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.00 E-value=0.21 Score=50.99 Aligned_cols=24 Identities=21% Similarity=0.409 Sum_probs=17.4
Q ss_pred CEEEECCCCCchHHHhHHHHHHHhh
Q 017196 71 DLCINSPTGSGKTLSYALPIVQTLS 95 (375)
Q Consensus 71 ~~ii~a~TGsGKTl~~~l~il~~l~ 95 (375)
-.++.+|.|+|||.++.+ +...+.
T Consensus 40 ayLf~Gp~G~GKtt~A~~-lak~l~ 63 (576)
T PRK14965 40 AFLFTGARGVGKTSTARI-LAKALN 63 (576)
T ss_pred EEEEECCCCCCHHHHHHH-HHHhhc
Confidence 468999999999987644 334443
No 301
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=94.99 E-value=0.11 Score=50.27 Aligned_cols=50 Identities=16% Similarity=0.211 Sum_probs=29.4
Q ss_pred HHHHHHHHhCCCCCccHhhHH----HHHHhhCCCCCCCCEEEECCCCCchHHHhH
Q 017196 37 PRLKVALQNMGISSLFPVQVA----VWQETIGPGLFERDLCINSPTGSGKTLSYA 87 (375)
Q Consensus 37 ~~i~~~l~~~g~~~~~~~Q~~----~~~~~~~~~~~~~~~ii~a~TGsGKTl~~~ 87 (375)
+|+-=-+.-.|+. |..+..+ .+..+++-+..+.|+++.+|+|+|||..|.
T Consensus 174 EWid~LlrSiG~~-P~~~~~r~k~~~L~rl~~fve~~~Nli~lGp~GTGKThla~ 227 (449)
T TIGR02688 174 EWIDVLIRSIGYE-PEGFEARQKLLLLARLLPLVEPNYNLIELGPKGTGKSYIYN 227 (449)
T ss_pred HHHHHHHHhcCCC-cccCChHHHHHHHHhhHHHHhcCCcEEEECCCCCCHHHHHH
Confidence 3433334557774 3333222 222222344577899999999999996553
No 302
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.99 E-value=0.21 Score=50.78 Aligned_cols=21 Identities=19% Similarity=0.366 Sum_probs=16.5
Q ss_pred CCccEEEEecchhhhhHhHHh
Q 017196 196 EHLCYLVVDETDRLLREAYQA 216 (375)
Q Consensus 196 ~~~~~vIiDE~h~l~~~~~~~ 216 (375)
...+++||||+|.|-...+..
T Consensus 117 ~~~KVvIIDEah~Lt~~A~NA 137 (584)
T PRK14952 117 SRYRIFIVDEAHMVTTAGFNA 137 (584)
T ss_pred CCceEEEEECCCcCCHHHHHH
Confidence 567899999999997666543
No 303
>PRK08939 primosomal protein DnaI; Reviewed
Probab=94.98 E-value=0.29 Score=45.74 Aligned_cols=27 Identities=26% Similarity=0.338 Sum_probs=19.2
Q ss_pred CCCCEEEECCCCCchHHHhHHHHHHHhh
Q 017196 68 FERDLCINSPTGSGKTLSYALPIVQTLS 95 (375)
Q Consensus 68 ~~~~~ii~a~TGsGKTl~~~l~il~~l~ 95 (375)
.++++++.|++|+|||..+. ++...+.
T Consensus 155 ~~~gl~L~G~~G~GKThLa~-Aia~~l~ 181 (306)
T PRK08939 155 KVKGLYLYGDFGVGKSYLLA-AIANELA 181 (306)
T ss_pred CCCeEEEECCCCCCHHHHHH-HHHHHHH
Confidence 35689999999999998643 3444443
No 304
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=94.97 E-value=0.082 Score=53.66 Aligned_cols=21 Identities=24% Similarity=0.390 Sum_probs=16.3
Q ss_pred CCCEEEECCCCCchHHHhHHH
Q 017196 69 ERDLCINSPTGSGKTLSYALP 89 (375)
Q Consensus 69 ~~~~ii~a~TGsGKTl~~~l~ 89 (375)
++-.+++||.|+|||.++-+-
T Consensus 38 ~hayLf~Gp~GtGKTt~Ak~l 58 (559)
T PRK05563 38 SHAYLFSGPRGTGKTSAAKIF 58 (559)
T ss_pred CeEEEEECCCCCCHHHHHHHH
Confidence 344788999999999876443
No 305
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=94.96 E-value=0.12 Score=49.24 Aligned_cols=40 Identities=13% Similarity=0.054 Sum_probs=24.8
Q ss_pred HHHHHHhhCCCCCCC---CEEEECCCCCchHHHhHHHHHHHhhh
Q 017196 56 VAVWQETIGPGLFER---DLCINSPTGSGKTLSYALPIVQTLSN 96 (375)
Q Consensus 56 ~~~~~~~~~~~~~~~---~~ii~a~TGsGKTl~~~l~il~~l~~ 96 (375)
..+...+...+.+|+ -+++.+|.|+|||..+ ..+...+.+
T Consensus 29 ~~a~~~L~~a~~~grl~ha~L~~G~~G~GKttlA-~~lA~~Llc 71 (351)
T PRK09112 29 EEAEAFLAQAYREGKLHHALLFEGPEGIGKATLA-FHLANHILS 71 (351)
T ss_pred HHHHHHHHHHHHcCCCCeeEeeECCCCCCHHHHH-HHHHHHHcC
Confidence 344444443333554 5899999999999754 445555555
No 306
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=94.93 E-value=0.16 Score=45.06 Aligned_cols=58 Identities=21% Similarity=0.138 Sum_probs=37.4
Q ss_pred CCCCCCCCEEEECCCCCchHHHhHHHHHHHhhh-cccCCceEEEEcccHHHHHHHHHHHHHhcc
Q 017196 64 GPGLFERDLCINSPTGSGKTLSYALPIVQTLSN-RAVRCLRALVVLPTRDLALQVKDVFAAIAP 126 (375)
Q Consensus 64 ~~~~~~~~~ii~a~TGsGKTl~~~l~il~~l~~-~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~ 126 (375)
..+..|..++|.+++|+|||.-++=-+.+.+.+ +. ++++++- .+-.+++.+.++.+..
T Consensus 14 GGip~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge----~vlyvs~-ee~~~~l~~~~~s~g~ 72 (226)
T PF06745_consen 14 GGIPKGSVVLISGPPGSGKTTLALQFLYNGLKNFGE----KVLYVSF-EEPPEELIENMKSFGW 72 (226)
T ss_dssp TSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHT------EEEEES-SS-HHHHHHHHHTTTS
T ss_pred CCCCCCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCC----cEEEEEe-cCCHHHHHHHHHHcCC
Confidence 344477889999999999997654445555555 32 4777774 3445677777776643
No 307
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=94.93 E-value=0.14 Score=48.96 Aligned_cols=27 Identities=30% Similarity=0.516 Sum_probs=19.9
Q ss_pred CCEEEECCCCCchHHHhHHHHHHHhhhc
Q 017196 70 RDLCINSPTGSGKTLSYALPIVQTLSNR 97 (375)
Q Consensus 70 ~~~ii~a~TGsGKTl~~~l~il~~l~~~ 97 (375)
.|+++.++||||||.+. --+...+...
T Consensus 43 ~n~~iyG~~GTGKT~~~-~~v~~~l~~~ 69 (366)
T COG1474 43 SNIIIYGPTGTGKTATV-KFVMEELEES 69 (366)
T ss_pred ccEEEECCCCCCHhHHH-HHHHHHHHhh
Confidence 46999999999999874 3455555544
No 308
>PRK09183 transposase/IS protein; Provisional
Probab=94.91 E-value=0.14 Score=46.56 Aligned_cols=74 Identities=18% Similarity=0.242 Sum_probs=41.7
Q ss_pred CccccCCCCCCCCCCHHHHHHHHhCCCCCccHhhHHHHHHhhCCCCCCCCEEEECCCCCchHHHhHHHHHHHhhhcccCC
Q 017196 22 SLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRC 101 (375)
Q Consensus 22 ~~~~~~~~~~~~~l~~~i~~~l~~~g~~~~~~~Q~~~~~~~~~~~~~~~~~ii~a~TGsGKTl~~~l~il~~l~~~~~~~ 101 (375)
.++++++++..+.++......|....| + ..+.++++.+|+|+|||..+.......... +
T Consensus 72 ~~l~~fd~~~~~~~~~~~i~~L~~~~~--------------i---~~~~~v~l~Gp~GtGKThLa~al~~~a~~~----G 130 (259)
T PRK09183 72 KTFEEYDFTFATGAPQKQLQSLRSLSF--------------I---ERNENIVLLGPSGVGKTHLAIALGYEAVRA----G 130 (259)
T ss_pred CcHhhcccccCCCCCHHHHHHHhcCCc--------------h---hcCCeEEEEeCCCCCHHHHHHHHHHHHHHc----C
Confidence 556666655555556655555543221 2 257889999999999997544333222222 2
Q ss_pred ceEEEEcccHHHHHHH
Q 017196 102 LRALVVLPTRDLALQV 117 (375)
Q Consensus 102 ~~~lil~Pt~~L~~Q~ 117 (375)
..++++ +..+|..++
T Consensus 131 ~~v~~~-~~~~l~~~l 145 (259)
T PRK09183 131 IKVRFT-TAADLLLQL 145 (259)
T ss_pred CeEEEE-eHHHHHHHH
Confidence 245554 344555444
No 309
>KOG1131 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 5'-3' helicase subunit RAD3 [Transcription; Replication, recombination and repair]
Probab=94.84 E-value=0.14 Score=49.97 Aligned_cols=79 Identities=14% Similarity=0.095 Sum_probs=50.4
Q ss_pred CCCCCccHhhHHHHHHhhCCCCCCCCEEEECCCCCchHHHhHHHHHHHhhhcccCCceEEEEcccHHHHHHHHHHHHHh
Q 017196 46 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAI 124 (375)
Q Consensus 46 ~g~~~~~~~Q~~~~~~~~~~~~~~~~~ii~a~TGsGKTl~~~l~il~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~ 124 (375)
+.+...+|-|..=..++=..+..+.++++.+|+|+|||.+.+-.++..-...+....+.|+..-|..=++....+++.+
T Consensus 12 FPY~~iYPEQ~~YM~elKrsLDakGh~llEMPSGTGKTvsLLSli~aYq~~~p~~~~KliYCSRTvpEieK~l~El~~l 90 (755)
T KOG1131|consen 12 FPYDYIYPEQYEYMRELKRSLDAKGHCLLEMPSGTGKTVSLLSLIIAYQLHYPDEHRKLIYCSRTVPEIEKALEELKRL 90 (755)
T ss_pred cCCcccCHHHHHHHHHHHHhhccCCcEEEECCCCCCcchHHHHHHHHHHHhCCcccceEEEecCcchHHHHHHHHHHHH
Confidence 3466678888775544445555677899999999999987554444433333333346888877765444444444443
No 310
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=94.84 E-value=0.18 Score=47.19 Aligned_cols=27 Identities=30% Similarity=0.385 Sum_probs=19.2
Q ss_pred CCC-EEEECCCCCchHHHhHHHHHHHhhh
Q 017196 69 ERD-LCINSPTGSGKTLSYALPIVQTLSN 96 (375)
Q Consensus 69 ~~~-~ii~a~TGsGKTl~~~l~il~~l~~ 96 (375)
... +++.+|.|+|||.++ ..+...+..
T Consensus 23 ~~halL~~Gp~G~Gktt~a-~~lA~~l~~ 50 (325)
T COG0470 23 LPHALLFYGPPGVGKTTAA-LALAKELLC 50 (325)
T ss_pred CCceeeeeCCCCCCHHHHH-HHHHHHHhC
Confidence 345 899999999999875 444444443
No 311
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=94.81 E-value=0.24 Score=48.55 Aligned_cols=26 Identities=23% Similarity=0.270 Sum_probs=18.4
Q ss_pred CCEEEECCCCCchHHHhHHHHHHHhhh
Q 017196 70 RDLCINSPTGSGKTLSYALPIVQTLSN 96 (375)
Q Consensus 70 ~~~ii~a~TGsGKTl~~~l~il~~l~~ 96 (375)
..+++++++|+|||.++.--+ ..+.+
T Consensus 96 ~vI~lvG~~GsGKTTtaakLA-~~L~~ 121 (437)
T PRK00771 96 QTIMLVGLQGSGKTTTAAKLA-RYFKK 121 (437)
T ss_pred eEEEEECCCCCcHHHHHHHHH-HHHHH
Confidence 458899999999998765433 33433
No 312
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=94.79 E-value=0.069 Score=48.69 Aligned_cols=37 Identities=14% Similarity=-0.147 Sum_probs=24.1
Q ss_pred CccHhhHHHHHHhhCCCCCCC-CEEEECCCCCchHHHh
Q 017196 50 SLFPVQVAVWQETIGPGLFER-DLCINSPTGSGKTLSY 86 (375)
Q Consensus 50 ~~~~~Q~~~~~~~~~~~~~~~-~~ii~a~TGsGKTl~~ 86 (375)
.+++.+.+++..+-..+..+. .+++.+|.|+|||...
T Consensus 23 ~~~~~~~~~~~~l~~~~~~~~~~~~l~G~~G~GKTtl~ 60 (269)
T TIGR03015 23 YPSKGHKRAMAYLEYGLSQREGFILITGEVGAGKTTLI 60 (269)
T ss_pred CCCHHHHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHH
Confidence 455666666655432222333 5889999999999754
No 313
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.76 E-value=0.1 Score=53.28 Aligned_cols=21 Identities=24% Similarity=0.400 Sum_probs=16.6
Q ss_pred CCccEEEEecchhhhhHhHHh
Q 017196 196 EHLCYLVVDETDRLLREAYQA 216 (375)
Q Consensus 196 ~~~~~vIiDE~h~l~~~~~~~ 216 (375)
...+++||||+|+|....+..
T Consensus 123 g~~KV~IIDEvh~Ls~~a~Na 143 (618)
T PRK14951 123 GRFKVFMIDEVHMLTNTAFNA 143 (618)
T ss_pred CCceEEEEEChhhCCHHHHHH
Confidence 467899999999987666544
No 314
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=94.74 E-value=0.27 Score=49.34 Aligned_cols=21 Identities=24% Similarity=0.545 Sum_probs=16.1
Q ss_pred CCCccEEEEecchhhhhHhHH
Q 017196 195 LEHLCYLVVDETDRLLREAYQ 215 (375)
Q Consensus 195 ~~~~~~vIiDE~h~l~~~~~~ 215 (375)
....+++||||+|.|-...+.
T Consensus 115 ~~~~KVvIIDEad~Lt~~A~N 135 (535)
T PRK08451 115 MARFKIFIIDEVHMLTKEAFN 135 (535)
T ss_pred cCCeEEEEEECcccCCHHHHH
Confidence 356789999999999665543
No 315
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=94.73 E-value=0.064 Score=55.53 Aligned_cols=112 Identities=20% Similarity=0.263 Sum_probs=72.0
Q ss_pred CCCCCCCCEEEECCCCCchHHHhHHHHHHHhhhccc-CCceEEEEcccHHHHHHHHHHHHH-----hccccCceEEEeec
Q 017196 64 GPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAV-RCLRALVVLPTRDLALQVKDVFAA-----IAPAVGLSVGLAVG 137 (375)
Q Consensus 64 ~~~~~~~~~ii~a~TGsGKTl~~~l~il~~l~~~~~-~~~~~lil~Pt~~L~~Q~~~~~~~-----~~~~~~~~v~~~~~ 137 (375)
.....+.-++|.+.||+|||.-++--+++.+..... ....+.+.-|++-.+..+...+.. .+.-.+.++-.. +
T Consensus 388 q~v~dn~v~~I~getgcgk~tq~aq~iLe~~~~ns~g~~~na~v~qprrisaisiaerva~er~e~~g~tvgy~vRf~-S 466 (1282)
T KOG0921|consen 388 QAVAENRVVIIKGETGCGKSTQVAQFLLESFLENSNGASFNAVVSQPRRISAISLAERVANERGEEVGETCGYNVRFD-S 466 (1282)
T ss_pred HHHhcCceeeEeecccccchhHHHHHHHHHHhhccccccccceeccccccchHHHHHHHHHhhHHhhccccccccccc-c
Confidence 333355668888999999999988888888877532 334477777888766655554432 222112111110 0
Q ss_pred CCchHHHHHHHhhcCccccCccCCchhHHHhhcC-CCcEEEeCcHHHHHHHhhcCCCCCCCccEEEEecchhhh
Q 017196 138 QSSIADEISELIKRPKLEAGICYDPEDVLQELQS-AVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLL 210 (375)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~IiV~Tp~~l~~~l~~~~~~~~~~~~~vIiDE~h~l~ 210 (375)
.... -.-|..+|-+-+++++.+ -++.+.++|+||.|+..
T Consensus 467 ------------------------------a~prpyg~i~fctvgvllr~~e~----glrg~sh~i~deiherd 506 (1282)
T KOG0921|consen 467 ------------------------------ATPRPYGSIMFCTVGVLLRMMEN----GLRGISHVIIDEIHERD 506 (1282)
T ss_pred ------------------------------cccccccceeeeccchhhhhhhh----cccccccccchhhhhhc
Confidence 1111 136888999998888776 24577899999999774
No 316
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=94.72 E-value=0.59 Score=40.13 Aligned_cols=26 Identities=23% Similarity=0.323 Sum_probs=18.2
Q ss_pred CCEEEECCCCCchHHHhHHHHHHHhhh
Q 017196 70 RDLCINSPTGSGKTLSYALPIVQTLSN 96 (375)
Q Consensus 70 ~~~ii~a~TGsGKTl~~~l~il~~l~~ 96 (375)
...++.+|.|+|||..+.. +...+..
T Consensus 15 ~~~L~~G~~G~gkt~~a~~-~~~~l~~ 40 (188)
T TIGR00678 15 HAYLFAGPEGVGKELLALA-LAKALLC 40 (188)
T ss_pred eEEEEECCCCCCHHHHHHH-HHHHHcC
Confidence 4589999999999976433 4444433
No 317
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=94.71 E-value=0.69 Score=41.27 Aligned_cols=55 Identities=11% Similarity=-0.013 Sum_probs=33.8
Q ss_pred CCCCCCEEEECCCCCchHHHhHHHHHHHhhhcccCCceEEEEcccHHHHHHHHHHHHHhc
Q 017196 66 GLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIA 125 (375)
Q Consensus 66 ~~~~~~~ii~a~TGsGKTl~~~l~il~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~ 125 (375)
+..|.-+++.+++|+|||..++-.+...+.. +.++++++. .+-..+..+.+..+.
T Consensus 21 i~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~----g~~~~yi~~-e~~~~~~~~~~~~~g 75 (230)
T PRK08533 21 IPAGSLILIEGDESTGKSILSQRLAYGFLQN----GYSVSYVST-QLTTTEFIKQMMSLG 75 (230)
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHHHhC----CCcEEEEeC-CCCHHHHHHHHHHhC
Confidence 3467789999999999997543333333222 235777773 333456666665543
No 318
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=94.70 E-value=0.18 Score=47.31 Aligned_cols=46 Identities=24% Similarity=0.183 Sum_probs=33.6
Q ss_pred CccHhhHHHHHHhhCCCCCCC---CEEEECCCCCchHHHhHHHHHHHhhh
Q 017196 50 SLFPVQVAVWQETIGPGLFER---DLCINSPTGSGKTLSYALPIVQTLSN 96 (375)
Q Consensus 50 ~~~~~Q~~~~~~~~~~~~~~~---~~ii~a~TGsGKTl~~~l~il~~l~~ 96 (375)
.++|||...|+.+...+..++ -.++.+|.|+||+..+ ..+...+..
T Consensus 3 ~~yPWl~~~~~~l~~~~~~~rl~hA~L~~G~~G~Gk~~lA-~~~a~~llC 51 (319)
T PRK06090 3 NDYPWLVPVWQNWKAGLDAGRIPGALLLQSDEGLGVESLV-ELFSRALLC 51 (319)
T ss_pred cCcccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHH-HHHHHHHcC
Confidence 468999999998876655554 5899999999999654 334444444
No 319
>PRK13709 conjugal transfer nickase/helicase TraI; Provisional
Probab=94.66 E-value=0.25 Score=56.15 Aligned_cols=65 Identities=17% Similarity=0.133 Sum_probs=44.9
Q ss_pred CccHhhHHHHHHhhCCCCCCCCEEEECCCCCchHHHhHHHHHHHhhh-cccCCceEEEEcccHHHHHHH
Q 017196 50 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSN-RAVRCLRALVVLPTRDLALQV 117 (375)
Q Consensus 50 ~~~~~Q~~~~~~~~~~~~~~~~~ii~a~TGsGKTl~~~l~il~~l~~-~~~~~~~~lil~Pt~~L~~Q~ 117 (375)
.+++-|.+|+..++.. .++-++|.+.-|+|||.. +-.++..+.. ....+.+++.++||..-+.++
T Consensus 967 ~Lt~~Q~~Av~~il~s--~dr~~~I~G~AGTGKTT~-l~~v~~~~~~l~~~~~~~V~glAPTgrAAk~L 1032 (1747)
T PRK13709 967 GLTSGQRAATRMILES--TDRFTVVQGYAGVGKTTQ-FRAVMSAVNTLPESERPRVVGLGPTHRAVGEM 1032 (1747)
T ss_pred CCCHHHHHHHHHHHhC--CCcEEEEEeCCCCCHHHH-HHHHHHHHHHhhcccCceEEEECCcHHHHHHH
Confidence 7899999999888741 246789999999999975 2333333322 112345688999998766544
No 320
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.64 E-value=0.43 Score=48.13 Aligned_cols=21 Identities=24% Similarity=0.422 Sum_probs=16.1
Q ss_pred CCccEEEEecchhhhhHhHHh
Q 017196 196 EHLCYLVVDETDRLLREAYQA 216 (375)
Q Consensus 196 ~~~~~vIiDE~h~l~~~~~~~ 216 (375)
...+++||||+|.|-...+..
T Consensus 118 ~~~kVvIIDEad~ls~~a~na 138 (527)
T PRK14969 118 GRFKVYIIDEVHMLSKSAFNA 138 (527)
T ss_pred CCceEEEEcCcccCCHHHHHH
Confidence 467899999999886655443
No 321
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.64 E-value=0.2 Score=50.11 Aligned_cols=25 Identities=28% Similarity=0.425 Sum_probs=17.9
Q ss_pred CEEEECCCCCchHHHhHHHHHHHhhh
Q 017196 71 DLCINSPTGSGKTLSYALPIVQTLSN 96 (375)
Q Consensus 71 ~~ii~a~TGsGKTl~~~l~il~~l~~ 96 (375)
-+++.+|.|+|||.++.. +...+..
T Consensus 38 a~Lf~GppGtGKTTlA~~-lA~~l~c 62 (504)
T PRK14963 38 AYLFSGPRGVGKTTTARL-IAMAVNC 62 (504)
T ss_pred EEEEECCCCCCHHHHHHH-HHHHHhc
Confidence 359999999999987543 4444443
No 322
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=94.64 E-value=0.43 Score=45.20 Aligned_cols=45 Identities=22% Similarity=0.268 Sum_probs=31.3
Q ss_pred ccHhhHHHHHHhhCCC-CCCCCEEEECCCCCchHHHhHHHHHHHhhh
Q 017196 51 LFPVQVAVWQETIGPG-LFERDLCINSPTGSGKTLSYALPIVQTLSN 96 (375)
Q Consensus 51 ~~~~Q~~~~~~~~~~~-~~~~~~ii~a~TGsGKTl~~~l~il~~l~~ 96 (375)
.+|||...|+.+.... .-.+-.++.+|.|+||+..+ ..+...+.+
T Consensus 2 ~yPW~~~~~~~l~~~~~rl~ha~Lf~Gp~G~GK~~lA-~~~A~~LlC 47 (342)
T PRK06964 2 LYPWQTDDWNRLQALRARLPHALLLHGQAGIGKLDFA-QHLAQGLLC 47 (342)
T ss_pred CCcccHHHHHHHHHhcCCcceEEEEECCCCCCHHHHH-HHHHHHHcC
Confidence 4799999999987531 11235789999999999765 444455544
No 323
>PRK04195 replication factor C large subunit; Provisional
Probab=94.57 E-value=0.21 Score=49.86 Aligned_cols=18 Identities=33% Similarity=0.503 Sum_probs=15.4
Q ss_pred CCCEEEECCCCCchHHHh
Q 017196 69 ERDLCINSPTGSGKTLSY 86 (375)
Q Consensus 69 ~~~~ii~a~TGsGKTl~~ 86 (375)
.+.+++.||.|+|||..+
T Consensus 39 ~~~lLL~GppG~GKTtla 56 (482)
T PRK04195 39 KKALLLYGPPGVGKTSLA 56 (482)
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 467999999999999754
No 324
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=94.56 E-value=0.84 Score=41.52 Aligned_cols=40 Identities=20% Similarity=0.022 Sum_probs=26.1
Q ss_pred CCCCCCCEEEECCCCCchHHHhHHHHHHHhhhcccCCceEEEEc
Q 017196 65 PGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVL 108 (375)
Q Consensus 65 ~~~~~~~~ii~a~TGsGKTl~~~l~il~~l~~~~~~~~~~lil~ 108 (375)
.+..|.-++|.+++|+|||.-++=-+.+.+.. +.+++|++
T Consensus 32 Gip~gs~~lI~G~pGtGKT~l~~qf~~~~a~~----Ge~vlyis 71 (259)
T TIGR03878 32 GIPAYSVINITGVSDTGKSLMVEQFAVTQASR----GNPVLFVT 71 (259)
T ss_pred CeECCcEEEEEcCCCCCHHHHHHHHHHHHHhC----CCcEEEEE
Confidence 34467778999999999997543333443333 23577776
No 325
>TIGR02785 addA_Gpos recombination helicase AddA, Firmicutes type. AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the Firmicutes (as modeled here) and the alphaproteobacteria, while the partner AddB proteins show no strong homology across the two groups of species.
Probab=94.52 E-value=0.11 Score=57.86 Aligned_cols=66 Identities=23% Similarity=0.192 Sum_probs=51.1
Q ss_pred ccHhhHHHHHHhhCCCCCCCCEEEECCCCCchHHHhHHHHHHHhhhcccCCceEEEEcccHHHHHHHHHHHHH
Q 017196 51 LFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAA 123 (375)
Q Consensus 51 ~~~~Q~~~~~~~~~~~~~~~~~ii~a~TGsGKTl~~~l~il~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~ 123 (375)
+++-|.+|+. ..+.+++|.|+-|||||.+.+--++..+..+ ....++++++=|+.-+.++..++.+
T Consensus 2 ~t~~Q~~ai~------~~~~~~lv~A~AGsGKT~~lv~r~~~~~~~~-~~~~~il~~tFt~~aa~e~~~ri~~ 67 (1232)
T TIGR02785 2 WTDEQWQAIY------TRGQNILVSASAGSGKTAVLVERIIKKILRG-VDIDRLLVVTFTNAAAREMKERIEE 67 (1232)
T ss_pred CCHHHHHHHh------CCCCCEEEEecCCCcHHHHHHHHHHHHHhcC-CCHhhEEEEeccHHHHHHHHHHHHH
Confidence 5788999853 2688999999999999998776677666554 2334699999999999876666654
No 326
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.51 E-value=0.23 Score=51.72 Aligned_cols=22 Identities=36% Similarity=0.369 Sum_probs=16.7
Q ss_pred CCCEEEECCCCCchHHHhHHHH
Q 017196 69 ERDLCINSPTGSGKTLSYALPI 90 (375)
Q Consensus 69 ~~~~ii~a~TGsGKTl~~~l~i 90 (375)
++-+.+.+|||+|||.+...-+
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA 206 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLA 206 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHH
Confidence 4457899999999998754433
No 327
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=94.50 E-value=0.09 Score=48.11 Aligned_cols=55 Identities=18% Similarity=0.331 Sum_probs=35.8
Q ss_pred CcCCCCccCccccCCCCCCCCCCHHHHHHHHhCCCCCccHhhHHHHHHhhCCCCCCCCEEEECCCCCchHHHhHHHHHHH
Q 017196 14 WMRSPVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQT 93 (375)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~l~~~i~~~l~~~g~~~~~~~Q~~~~~~~~~~~~~~~~~ii~a~TGsGKTl~~~l~il~~ 93 (375)
...+|..+.+|++++ +++-+.+.+.. ...=++|.+|||||||.+ +-.++..
T Consensus 98 lR~Ip~~i~~~e~Lg------lP~i~~~~~~~----------------------~~GLILVTGpTGSGKSTT-lAamId~ 148 (353)
T COG2805 98 LRLIPSKIPTLEELG------LPPIVRELAES----------------------PRGLILVTGPTGSGKSTT-LAAMIDY 148 (353)
T ss_pred EeccCccCCCHHHcC------CCHHHHHHHhC----------------------CCceEEEeCCCCCcHHHH-HHHHHHH
Confidence 455677777777777 65555442210 122389999999999976 4556777
Q ss_pred hhhc
Q 017196 94 LSNR 97 (375)
Q Consensus 94 l~~~ 97 (375)
+.+.
T Consensus 149 iN~~ 152 (353)
T COG2805 149 INKH 152 (353)
T ss_pred Hhcc
Confidence 7654
No 328
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.49 E-value=0.26 Score=47.24 Aligned_cols=24 Identities=25% Similarity=0.394 Sum_probs=17.0
Q ss_pred CEEEECCCCCchHHHhHHHHHHHhh
Q 017196 71 DLCINSPTGSGKTLSYALPIVQTLS 95 (375)
Q Consensus 71 ~~ii~a~TGsGKTl~~~l~il~~l~ 95 (375)
-+++.||.|+|||..+.. +...+.
T Consensus 40 ~~L~~Gp~G~GKTtla~~-la~~l~ 63 (363)
T PRK14961 40 AWLLSGTRGVGKTTIARL-LAKSLN 63 (363)
T ss_pred EEEEecCCCCCHHHHHHH-HHHHhc
Confidence 368999999999986543 334443
No 329
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=94.46 E-value=0.33 Score=47.88 Aligned_cols=16 Identities=38% Similarity=0.710 Sum_probs=14.4
Q ss_pred CCEEEECCCCCchHHH
Q 017196 70 RDLCINSPTGSGKTLS 85 (375)
Q Consensus 70 ~~~ii~a~TGsGKTl~ 85 (375)
+.+++.+|.|+|||+.
T Consensus 338 KGVLLvGPPGTGKTlL 353 (752)
T KOG0734|consen 338 KGVLLVGPPGTGKTLL 353 (752)
T ss_pred CceEEeCCCCCchhHH
Confidence 6799999999999973
No 330
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=94.45 E-value=0.22 Score=47.97 Aligned_cols=31 Identities=16% Similarity=0.099 Sum_probs=22.2
Q ss_pred CccEEEEecchhhhhH-hHHhHHHHHHHhhhc
Q 017196 197 HLCYLVVDETDRLLRE-AYQAWLPTVLQLTRS 227 (375)
Q Consensus 197 ~~~~vIiDE~h~l~~~-~~~~~l~~i~~~l~~ 227 (375)
++++++||+++.+..+ ..++.+-.+.+.+..
T Consensus 175 ~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~ 206 (408)
T COG0593 175 SLDLLLIDDIQFLAGKERTQEEFFHTFNALLE 206 (408)
T ss_pred ccCeeeechHhHhcCChhHHHHHHHHHHHHHh
Confidence 6789999999987554 455556666666555
No 331
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=94.43 E-value=0.28 Score=46.72 Aligned_cols=26 Identities=23% Similarity=0.313 Sum_probs=18.2
Q ss_pred CCEEEECCCCCchHHHhHHHHHHHhhh
Q 017196 70 RDLCINSPTGSGKTLSYALPIVQTLSN 96 (375)
Q Consensus 70 ~~~ii~a~TGsGKTl~~~l~il~~l~~ 96 (375)
+..++.||.|+|||..+ ..+...+..
T Consensus 37 ~~~Ll~G~~G~GKt~~a-~~la~~l~~ 62 (355)
T TIGR02397 37 HAYLFSGPRGTGKTSIA-RIFAKALNC 62 (355)
T ss_pred eEEEEECCCCCCHHHHH-HHHHHHhcC
Confidence 35789999999999754 444444443
No 332
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=94.43 E-value=0.46 Score=47.60 Aligned_cols=19 Identities=32% Similarity=0.569 Sum_probs=15.8
Q ss_pred CCCCEEEECCCCCchHHHh
Q 017196 68 FERDLCINSPTGSGKTLSY 86 (375)
Q Consensus 68 ~~~~~ii~a~TGsGKTl~~ 86 (375)
..+.+++.+|.|||||..+
T Consensus 87 ~~~giLL~GppGtGKT~la 105 (495)
T TIGR01241 87 IPKGVLLVGPPGTGKTLLA 105 (495)
T ss_pred CCCcEEEECCCCCCHHHHH
Confidence 3467999999999999853
No 333
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=94.36 E-value=0.51 Score=42.45 Aligned_cols=19 Identities=26% Similarity=0.522 Sum_probs=16.3
Q ss_pred CCCCEEEECCCCCchHHHh
Q 017196 68 FERDLCINSPTGSGKTLSY 86 (375)
Q Consensus 68 ~~~~~ii~a~TGsGKTl~~ 86 (375)
..+|+++.+|+|||||..+
T Consensus 150 APknVLFyGppGTGKTm~A 168 (368)
T COG1223 150 APKNVLFYGPPGTGKTMMA 168 (368)
T ss_pred CcceeEEECCCCccHHHHH
Confidence 4589999999999999753
No 334
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=94.33 E-value=0.78 Score=43.15 Aligned_cols=53 Identities=21% Similarity=0.243 Sum_probs=35.5
Q ss_pred CccccCCCCCCCCCCHHHHHHHH--hCCCCCccHhhHHHHHHhhCCCCCCCCEEEECCCCCchHHHh
Q 017196 22 SLFEDCPLDHLPCLDPRLKVALQ--NMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSY 86 (375)
Q Consensus 22 ~~~~~~~~~~~~~l~~~i~~~l~--~~g~~~~~~~Q~~~~~~~~~~~~~~~~~ii~a~TGsGKTl~~ 86 (375)
.+|++.+ +|+..+.+--. .+...+|--++.-. + ...+.+++.+|.|||||+.+
T Consensus 148 vtY~dIG-----GL~~Qi~EirE~VELPL~~PElF~~~G----I---~PPKGVLLYGPPGTGKTLLA 202 (406)
T COG1222 148 VTYEDIG-----GLDEQIQEIREVVELPLKNPELFEELG----I---DPPKGVLLYGPPGTGKTLLA 202 (406)
T ss_pred CChhhcc-----CHHHHHHHHHHHhcccccCHHHHHHcC----C---CCCCceEeeCCCCCcHHHHH
Confidence 3455555 67776665543 35666676666553 3 25688999999999999864
No 335
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=94.29 E-value=0.17 Score=51.30 Aligned_cols=26 Identities=19% Similarity=0.353 Sum_probs=18.5
Q ss_pred CCEEEECCCCCchHHHhHHHHHHHhhh
Q 017196 70 RDLCINSPTGSGKTLSYALPIVQTLSN 96 (375)
Q Consensus 70 ~~~ii~a~TGsGKTl~~~l~il~~l~~ 96 (375)
+..++.||.|+|||..+.. +...+.+
T Consensus 39 hA~Lf~GP~GvGKTTlA~~-lAk~L~C 64 (605)
T PRK05896 39 HAYIFSGPRGIGKTSIAKI-FAKAINC 64 (605)
T ss_pred ceEEEECCCCCCHHHHHHH-HHHHhcC
Confidence 4578999999999986544 3344433
No 336
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.27 E-value=0.33 Score=49.51 Aligned_cols=21 Identities=19% Similarity=0.156 Sum_probs=16.8
Q ss_pred CCEEEECCCCCchHHHhHHHH
Q 017196 70 RDLCINSPTGSGKTLSYALPI 90 (375)
Q Consensus 70 ~~~ii~a~TGsGKTl~~~l~i 90 (375)
..+++.+|.|+|||.++.+.+
T Consensus 39 ha~Lf~GPpG~GKTtiArilA 59 (624)
T PRK14959 39 PAYLFSGTRGVGKTTIARIFA 59 (624)
T ss_pred ceEEEECCCCCCHHHHHHHHH
Confidence 457899999999999865544
No 337
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=94.26 E-value=0.86 Score=44.21 Aligned_cols=19 Identities=32% Similarity=0.513 Sum_probs=16.5
Q ss_pred CCCCEEEECCCCCchHHHh
Q 017196 68 FERDLCINSPTGSGKTLSY 86 (375)
Q Consensus 68 ~~~~~ii~a~TGsGKTl~~ 86 (375)
..+.+++.+|.|||||+.+
T Consensus 178 ~pkgvLL~GppGTGKT~LA 196 (398)
T PTZ00454 178 PPRGVLLYGPPGTGKTMLA 196 (398)
T ss_pred CCceEEEECCCCCCHHHHH
Confidence 5678999999999999854
No 338
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=94.25 E-value=0.41 Score=44.67 Aligned_cols=16 Identities=38% Similarity=0.619 Sum_probs=14.1
Q ss_pred CEEEECCCCCchHHHh
Q 017196 71 DLCINSPTGSGKTLSY 86 (375)
Q Consensus 71 ~~ii~a~TGsGKTl~~ 86 (375)
++++.||.|+|||..+
T Consensus 40 ~~ll~G~~G~GKt~~~ 55 (319)
T PRK00440 40 HLLFAGPPGTGKTTAA 55 (319)
T ss_pred eEEEECCCCCCHHHHH
Confidence 5899999999999754
No 339
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=94.22 E-value=0.41 Score=46.87 Aligned_cols=48 Identities=19% Similarity=0.101 Sum_probs=30.4
Q ss_pred HHHHhhCCCCCCCCEEEECCCCCchHHHhHHHHHHHhhhcccCCceEEEEc
Q 017196 58 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVL 108 (375)
Q Consensus 58 ~~~~~~~~~~~~~~~ii~a~TGsGKTl~~~l~il~~l~~~~~~~~~~lil~ 108 (375)
.++.++..+..|.-++|.|++|+|||.- ++-+...+-.. .+..++|+.
T Consensus 183 ~LD~~~~G~~~g~liviag~pg~GKT~~-al~ia~~~a~~--~g~~v~~fS 230 (421)
T TIGR03600 183 KLDRLTNGLVKGDLIVIGARPSMGKTTL-ALNIAENVALR--EGKPVLFFS 230 (421)
T ss_pred hHHHHhcCCCCCceEEEEeCCCCCHHHH-HHHHHHHHHHh--CCCcEEEEE
Confidence 4455566777788889999999999964 44444333211 122466665
No 340
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=94.21 E-value=0.041 Score=54.55 Aligned_cols=27 Identities=26% Similarity=0.374 Sum_probs=20.8
Q ss_pred CCCccEEEEecchhhhhHhHHhHHHHH
Q 017196 195 LEHLCYLVVDETDRLLREAYQAWLPTV 221 (375)
Q Consensus 195 ~~~~~~vIiDE~h~l~~~~~~~~l~~i 221 (375)
....++.||||+|++....|...+..+
T Consensus 117 ~~ryKVyiIDEvHMLS~~afNALLKTL 143 (515)
T COG2812 117 EGRYKVYIIDEVHMLSKQAFNALLKTL 143 (515)
T ss_pred cccceEEEEecHHhhhHHHHHHHhccc
Confidence 467889999999999777876555443
No 341
>PRK06904 replicative DNA helicase; Validated
Probab=94.20 E-value=0.6 Score=46.37 Aligned_cols=61 Identities=15% Similarity=0.036 Sum_probs=34.8
Q ss_pred HHHhhCCCCCCCCEEEECCCCCchHHHhHHHHHHHhhhcccCCceEEEEcccHHHHHHHHHHHHH
Q 017196 59 WQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAA 123 (375)
Q Consensus 59 ~~~~~~~~~~~~~~ii~a~TGsGKTl~~~l~il~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~ 123 (375)
++.+...+..|.-++|.|.+|+|||. +++-+...+... .+..++|.+. ..-.+|+..++-.
T Consensus 211 LD~~t~Gl~~G~LiiIaarPg~GKTa-falnia~~~a~~--~g~~Vl~fSl-EMs~~ql~~Rlla 271 (472)
T PRK06904 211 LDKKTAGLQPSDLIIVAARPSMGKTT-FAMNLCENAAMA--SEKPVLVFSL-EMPAEQIMMRMLA 271 (472)
T ss_pred HHHHHhccCCCcEEEEEeCCCCChHH-HHHHHHHHHHHh--cCCeEEEEec-cCCHHHHHHHHHH
Confidence 34455566677778889999999996 444444443221 1224666543 2234455555543
No 342
>PF13173 AAA_14: AAA domain
Probab=94.20 E-value=0.72 Score=36.89 Aligned_cols=17 Identities=29% Similarity=0.522 Sum_probs=14.5
Q ss_pred CCCEEEECCCCCchHHH
Q 017196 69 ERDLCINSPTGSGKTLS 85 (375)
Q Consensus 69 ~~~~ii~a~TGsGKTl~ 85 (375)
++-+++.||.|+|||..
T Consensus 2 ~~~~~l~G~R~vGKTtl 18 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTL 18 (128)
T ss_pred CCeEEEECCCCCCHHHH
Confidence 45689999999999974
No 343
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=94.19 E-value=0.36 Score=47.60 Aligned_cols=41 Identities=24% Similarity=0.247 Sum_probs=25.2
Q ss_pred CCEEEECCCCCchHHHhHHHHHHHhhhcccCCceEEEEcccHHHHH
Q 017196 70 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLAL 115 (375)
Q Consensus 70 ~~~ii~a~TGsGKTl~~~l~il~~l~~~~~~~~~~lil~Pt~~L~~ 115 (375)
..+++.||+|+|||..+ -.+.+.+... +.+++++.. ..+..
T Consensus 142 npl~L~G~~G~GKTHLl-~Ai~~~l~~~---~~~v~yi~~-~~f~~ 182 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLM-QAAVHALRES---GGKILYVRS-ELFTE 182 (445)
T ss_pred ceEEEEcCCCCCHHHHH-HHHHHHHHHc---CCCEEEeeH-HHHHH
Confidence 34899999999999753 3444444432 235666653 34444
No 344
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.17 E-value=0.15 Score=52.22 Aligned_cols=24 Identities=21% Similarity=0.448 Sum_probs=17.3
Q ss_pred CCEEEECCCCCchHHHhHHHHHHHh
Q 017196 70 RDLCINSPTGSGKTLSYALPIVQTL 94 (375)
Q Consensus 70 ~~~ii~a~TGsGKTl~~~l~il~~l 94 (375)
+.+++.+|.|+|||..+.. +...+
T Consensus 39 ~a~Lf~Gp~G~GKTtlA~~-lA~~l 62 (585)
T PRK14950 39 HAYLFTGPRGVGKTSTARI-LAKAV 62 (585)
T ss_pred eEEEEECCCCCCHHHHHHH-HHHHh
Confidence 3469999999999987544 33444
No 345
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=94.16 E-value=0.63 Score=45.54 Aligned_cols=22 Identities=23% Similarity=0.155 Sum_probs=16.6
Q ss_pred CEEEECCCCCchHHHhHHHHHH
Q 017196 71 DLCINSPTGSGKTLSYALPIVQ 92 (375)
Q Consensus 71 ~~ii~a~TGsGKTl~~~l~il~ 92 (375)
-+++++++|+|||.++.--+..
T Consensus 101 vi~~vG~~GsGKTTtaakLA~~ 122 (428)
T TIGR00959 101 VILMVGLQGSGKTTTCGKLAYY 122 (428)
T ss_pred EEEEECCCCCcHHHHHHHHHHH
Confidence 4788899999999876544433
No 346
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=94.06 E-value=0.47 Score=42.37 Aligned_cols=62 Identities=13% Similarity=0.168 Sum_probs=37.1
Q ss_pred HHHhhC-CCCCCCCEEEECCCCCchHHHhHHHHHHHhhhcccCCceEEEEcccHHHHHHHHHHHHHhc
Q 017196 59 WQETIG-PGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIA 125 (375)
Q Consensus 59 ~~~~~~-~~~~~~~~ii~a~TGsGKTl~~~l~il~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~ 125 (375)
++.++. .+..|.-+++.+++|+|||.-+.--+...+.+ +-+++|+.--. -.+++.+.+..+.
T Consensus 14 LD~~l~gG~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~----g~~~~y~~~e~-~~~~~~~~~~~~g 76 (234)
T PRK06067 14 LDRKLGGGIPFPSLILIEGDHGTGKSVLSQQFVYGALKQ----GKKVYVITTEN-TSKSYLKQMESVK 76 (234)
T ss_pred HHHhhCCCCcCCcEEEEECCCCCChHHHHHHHHHHHHhC----CCEEEEEEcCC-CHHHHHHHHHHCC
Confidence 344442 44467778999999999997543333444433 22567766543 3356666666653
No 347
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=93.98 E-value=0.42 Score=47.38 Aligned_cols=100 Identities=14% Similarity=0.207 Sum_probs=74.8
Q ss_pred CCCchHHHhHHHHHHHhhhcccCCceEEEEcccHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHHhhcCccccC
Q 017196 78 TGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAG 157 (375)
Q Consensus 78 TGsGKTl~~~l~il~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (375)
.++||+-.-++++.+.+..+ -.|.++|.+.+.+-|.|++..+. . ..++++..++|..+.....
T Consensus 366 vF~gse~~K~lA~rq~v~~g--~~PP~lIfVQs~eRak~L~~~L~-~--~~~i~v~vIh~e~~~~qrd------------ 428 (593)
T KOG0344|consen 366 VFCGSEKGKLLALRQLVASG--FKPPVLIFVQSKERAKQLFEELE-I--YDNINVDVIHGERSQKQRD------------ 428 (593)
T ss_pred eeeecchhHHHHHHHHHhcc--CCCCeEEEEecHHHHHHHHHHhh-h--ccCcceeeEecccchhHHH------------
Confidence 57888888778777777766 55679999999999999999987 2 2378999999997654442
Q ss_pred ccCCchhHHHhhc-CCCcEEEeCcHHHHHHHhhcCCCCCCCccEEEEecch
Q 017196 158 ICYDPEDVLQELQ-SAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETD 207 (375)
Q Consensus 158 ~~~~~~~~~~~~~-~~~~IiV~Tp~~l~~~l~~~~~~~~~~~~~vIiDE~h 207 (375)
+-..... +...|+||| +++.+ ++++..+.+||-+++-
T Consensus 429 ------e~~~~FR~g~IwvLicT-----dll~R--GiDf~gvn~VInyD~p 466 (593)
T KOG0344|consen 429 ------ETMERFRIGKIWVLICT-----DLLAR--GIDFKGVNLVINYDFP 466 (593)
T ss_pred ------HHHHHHhccCeeEEEeh-----hhhhc--cccccCcceEEecCCC
Confidence 1222333 447899999 44444 5899999999998876
No 348
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=93.93 E-value=0.23 Score=45.99 Aligned_cols=118 Identities=19% Similarity=0.239 Sum_probs=63.1
Q ss_pred CCCEEEECCCCCchHHHhHHHHHHHhhhc-ccCCce-EEEEc-----------ccHHHHHHHHHHHHHhccccCceEEEe
Q 017196 69 ERDLCINSPTGSGKTLSYALPIVQTLSNR-AVRCLR-ALVVL-----------PTRDLALQVKDVFAAIAPAVGLSVGLA 135 (375)
Q Consensus 69 ~~~~ii~a~TGsGKTl~~~l~il~~l~~~-~~~~~~-~lil~-----------Pt~~L~~Q~~~~~~~~~~~~~~~v~~~ 135 (375)
++-+++.+|.|||||.- +-++.+.+.-+ ..+..+ .+|=. -+-.|+.++++.++++..+-+.-|+.+
T Consensus 177 NRliLlhGPPGTGKTSL-CKaLaQkLSIR~~~~y~~~~liEinshsLFSKWFsESgKlV~kmF~kI~ELv~d~~~lVfvL 255 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSL-CKALAQKLSIRTNDRYYKGQLIEINSHSLFSKWFSESGKLVAKMFQKIQELVEDRGNLVFVL 255 (423)
T ss_pred eeEEEEeCCCCCChhHH-HHHHHHhheeeecCccccceEEEEehhHHHHHHHhhhhhHHHHHHHHHHHHHhCCCcEEEEE
Confidence 34589999999999953 45555555321 112222 33333 344577788888888888877777777
Q ss_pred ecCCchHHHHHH-H--hhcCccccCccCCchhHHHhhcCCCcEEEeCcHHHHHHH
Q 017196 136 VGQSSIADEISE-L--IKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHI 187 (375)
Q Consensus 136 ~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~IiV~Tp~~l~~~l 187 (375)
...-..-...+. . -+.|.+....-..--.|.+.+.+.++|++-|...+.+.+
T Consensus 256 IDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDrlK~~~NvliL~TSNl~~si 310 (423)
T KOG0744|consen 256 IDEVESLAAARTSASSRNEPSDAIRVVNALLTQLDRLKRYPNVLILATSNLTDSI 310 (423)
T ss_pred eHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHhccCCCEEEEeccchHHHH
Confidence 665322222211 1 111111111111122344566777777776555454433
No 349
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.88 E-value=0.4 Score=46.62 Aligned_cols=20 Identities=20% Similarity=0.207 Sum_probs=16.0
Q ss_pred CCEEEECCCCCchHHHhHHH
Q 017196 70 RDLCINSPTGSGKTLSYALP 89 (375)
Q Consensus 70 ~~~ii~a~TGsGKTl~~~l~ 89 (375)
+..++.+|.|+|||.++...
T Consensus 39 ha~lf~Gp~G~GKtt~A~~~ 58 (397)
T PRK14955 39 HGYIFSGLRGVGKTTAARVF 58 (397)
T ss_pred eeEEEECCCCCCHHHHHHHH
Confidence 34889999999999876543
No 350
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=93.83 E-value=0.4 Score=45.88 Aligned_cols=23 Identities=26% Similarity=0.192 Sum_probs=17.7
Q ss_pred CCCCEEEECCCCCchHHHhHHHH
Q 017196 68 FERDLCINSPTGSGKTLSYALPI 90 (375)
Q Consensus 68 ~~~~~ii~a~TGsGKTl~~~l~i 90 (375)
.++.+++.+|+|+|||....--+
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA 227 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLG 227 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 45678899999999998754433
No 351
>PHA00012 I assembly protein
Probab=93.81 E-value=0.23 Score=46.15 Aligned_cols=26 Identities=27% Similarity=0.339 Sum_probs=20.0
Q ss_pred EEEECCCCCchHHHhHHHHHHHhhhc
Q 017196 72 LCINSPTGSGKTLSYALPIVQTLSNR 97 (375)
Q Consensus 72 ~ii~a~TGsGKTl~~~l~il~~l~~~ 97 (375)
-+|.+..|+|||+.++.-+...+.++
T Consensus 4 ylITGkPGSGKSl~aV~~I~~~L~~G 29 (361)
T PHA00012 4 YVVTGKLGAGKTLVAVSRIQDKLVKG 29 (361)
T ss_pred EEEecCCCCCchHHHHHHHHHHHHcC
Confidence 36889999999998777666666554
No 352
>PF05729 NACHT: NACHT domain
Probab=93.71 E-value=1.2 Score=36.75 Aligned_cols=43 Identities=23% Similarity=0.274 Sum_probs=24.9
Q ss_pred EEEECCCCCchHHHhHHHHHHHhhhcccCC--ceEEEEcccHHHHH
Q 017196 72 LCINSPTGSGKTLSYALPIVQTLSNRAVRC--LRALVVLPTRDLAL 115 (375)
Q Consensus 72 ~ii~a~TGsGKTl~~~l~il~~l~~~~~~~--~~~lil~Pt~~L~~ 115 (375)
++|.|+.|+|||... --+...+....... ..+++....++...
T Consensus 3 l~I~G~~G~GKStll-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 47 (166)
T PF05729_consen 3 LWISGEPGSGKSTLL-RKLAQQLAEEEPPPSKFPYPFFFSLRDISD 47 (166)
T ss_pred EEEECCCCCChHHHH-HHHHHHHHhcCcccccceEEEEEeehhhhh
Confidence 688999999999754 44444554433222 13444445444433
No 353
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=93.66 E-value=0.32 Score=56.40 Aligned_cols=65 Identities=22% Similarity=0.269 Sum_probs=44.0
Q ss_pred CCccHhhHHHHHHhhCCCCCCCCEEEECCCCCchHHHhH---HHHHHHhhhcccCCceEEEEcccHHHHHHHH
Q 017196 49 SSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYA---LPIVQTLSNRAVRCLRALVVLPTRDLALQVK 118 (375)
Q Consensus 49 ~~~~~~Q~~~~~~~~~~~~~~~~~ii~a~TGsGKTl~~~---l~il~~l~~~~~~~~~~lil~Pt~~L~~Q~~ 118 (375)
..+++.|.+|+..++. ..++-++|.+.-|+|||.... -++...+.. .+.+++.++||..-+.++.
T Consensus 1018 ~~Lt~~Q~~Ai~~il~--~~~~~~~i~G~AGtGKTt~l~~~~~~i~~~~~~---~g~~v~glApT~~Aa~~L~ 1085 (1960)
T TIGR02760 1018 ERLTHGQKQAIHLIIS--TKDRFVAVQGLAGVGKTTMLESRYKPVLQAFES---EQLQVIGLAPTHEAVGELK 1085 (1960)
T ss_pred CCCCHHHHHHHHHHHh--CCCcEEEEEeCCCCCHHHhHHHHHHHHHHHHHh---cCCeEEEEeChHHHHHHHH
Confidence 3799999999988763 123567889999999997531 122222222 3457899999987665553
No 354
>PF05876 Terminase_GpA: Phage terminase large subunit (GpA); InterPro: IPR008866 This entry is represented by Bacteriophage lambda, GpA. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry consists of several phage terminase large subunit proteins as well as related sequences from several bacterial species. The DNA packaging enzyme of bacteriophage lambda, terminase, is a heteromultimer composed of a small subunit, gpNu1, and a large subunit, gpA, products of the Nu1 and A genes, respectively. Terminase is involved in the site-specific binding and cutting of the DNA in the initial stages of packaging. It is now known that gpA is actively involved in late stages of packaging, including DNA translocation, and that this enzyme contains separate functional domains for its early and late packaging activities [].
Probab=93.66 E-value=0.1 Score=52.91 Aligned_cols=73 Identities=18% Similarity=0.144 Sum_probs=49.0
Q ss_pred CCccHhhHHHHHHhhCCCCCCCCEEEECCCCCchHHHhHHHHHHHhhhcccCCceEEEEcccHHHHHHHH-HHHHHhcc
Q 017196 49 SSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVK-DVFAAIAP 126 (375)
Q Consensus 49 ~~~~~~Q~~~~~~~~~~~~~~~~~ii~a~TGsGKTl~~~l~il~~l~~~~~~~~~~lil~Pt~~L~~Q~~-~~~~~~~~ 126 (375)
...+|||.+..+.+-+. .-+.+.+..+.-+|||...+..+...+... + ..++++.||.++|+... ..+..+..
T Consensus 15 ~~~~Py~~eimd~~~~~--~v~~Vv~~k~aQ~GkT~~~~n~~g~~i~~~--P-~~~l~v~Pt~~~a~~~~~~rl~Pmi~ 88 (557)
T PF05876_consen 15 TDRTPYLREIMDALSDP--SVREVVVMKSAQVGKTELLLNWIGYSIDQD--P-GPMLYVQPTDDAAKDFSKERLDPMIR 88 (557)
T ss_pred CCCChhHHHHHHhcCCc--CccEEEEEEcchhhHhHHHHhhceEEEEeC--C-CCEEEEEEcHHHHHHHHHHHHHHHHH
Confidence 36789999975544321 125789999999999986444333333333 2 25999999999998765 45555544
No 355
>COG3973 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=93.66 E-value=0.32 Score=48.61 Aligned_cols=87 Identities=20% Similarity=0.186 Sum_probs=53.2
Q ss_pred CCHHHHHHHHhCCCC-------CccHhhHHHHHHhhCCCCCCCCEEEECCCCCchHHHhHHHHHHHhhh--cccCCceEE
Q 017196 35 LDPRLKVALQNMGIS-------SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSN--RAVRCLRAL 105 (375)
Q Consensus 35 l~~~i~~~l~~~g~~-------~~~~~Q~~~~~~~~~~~~~~~~~ii~a~TGsGKTl~~~l~il~~l~~--~~~~~~~~l 105 (375)
-++-++..|.+..-. +..+-|-++ +. ...++-++|++.-|||||.+++=-+.-.+.. +......++
T Consensus 190 ~dEvL~~~Lek~ss~~mrdIV~TIQkEQneI----IR-~ek~~ilVVQGaAGSGKTtiALHRvAyLlY~~R~~l~~k~vl 264 (747)
T COG3973 190 RDEVLQRVLEKNSSAKMRDIVETIQKEQNEI----IR-FEKNKILVVQGAAGSGKTTIALHRVAYLLYGYRGPLQAKPVL 264 (747)
T ss_pred HHHHHHHHHHhccchhHHHHHHHhhHhHHHH----Hh-ccCCCeEEEecCCCCCchhHHHHHHHHHHhccccccccCceE
Confidence 344556666655333 344555554 32 2244558899999999998865333333332 223334599
Q ss_pred EEcccHHHHHHHHHHHHHhcc
Q 017196 106 VVLPTRDLALQVKDVFAAIAP 126 (375)
Q Consensus 106 il~Pt~~L~~Q~~~~~~~~~~ 126 (375)
|+.|++-+..-+.+.+=.++.
T Consensus 265 vl~PN~vFleYis~VLPeLGe 285 (747)
T COG3973 265 VLGPNRVFLEYISRVLPELGE 285 (747)
T ss_pred EEcCcHHHHHHHHHhchhhcc
Confidence 999999988777666665544
No 356
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=93.65 E-value=0.46 Score=45.73 Aligned_cols=30 Identities=27% Similarity=0.246 Sum_probs=21.7
Q ss_pred CCCCCCCEEEECCCCCchHHHhHHHHHHHhh
Q 017196 65 PGLFERDLCINSPTGSGKTLSYALPIVQTLS 95 (375)
Q Consensus 65 ~~~~~~~~ii~a~TGsGKTl~~~l~il~~l~ 95 (375)
.+-.|+.++|.+|+|+|||... -.+...+.
T Consensus 164 pig~Gq~~~IvG~~g~GKTtL~-~~i~~~I~ 193 (415)
T TIGR00767 164 PIGKGQRGLIVAPPKAGKTVLL-QKIAQAIT 193 (415)
T ss_pred EeCCCCEEEEECCCCCChhHHH-HHHHHhhc
Confidence 4558899999999999999743 33444443
No 357
>PRK13342 recombination factor protein RarA; Reviewed
Probab=93.61 E-value=0.5 Score=46.16 Aligned_cols=17 Identities=29% Similarity=0.474 Sum_probs=14.7
Q ss_pred CCEEEECCCCCchHHHh
Q 017196 70 RDLCINSPTGSGKTLSY 86 (375)
Q Consensus 70 ~~~ii~a~TGsGKTl~~ 86 (375)
..+++.+|.|+|||..+
T Consensus 37 ~~ilL~GppGtGKTtLA 53 (413)
T PRK13342 37 SSMILWGPPGTGKTTLA 53 (413)
T ss_pred ceEEEECCCCCCHHHHH
Confidence 47899999999999764
No 358
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=93.60 E-value=0.14 Score=50.19 Aligned_cols=42 Identities=26% Similarity=0.358 Sum_probs=29.9
Q ss_pred cHhhHHHHHHhhCCCCCCC-CEEEECCCCCchHHHhHHHHHHHhhhc
Q 017196 52 FPVQVAVWQETIGPGLFER-DLCINSPTGSGKTLSYALPIVQTLSNR 97 (375)
Q Consensus 52 ~~~Q~~~~~~~~~~~~~~~-~~ii~a~TGsGKTl~~~l~il~~l~~~ 97 (375)
.+.|...+..++. ..+ =++|.+|||||||.+ +..++..+...
T Consensus 243 ~~~~~~~~~~~~~---~p~GliLvTGPTGSGKTTT-LY~~L~~ln~~ 285 (500)
T COG2804 243 SPFQLARLLRLLN---RPQGLILVTGPTGSGKTTT-LYAALSELNTP 285 (500)
T ss_pred CHHHHHHHHHHHh---CCCeEEEEeCCCCCCHHHH-HHHHHHHhcCC
Confidence 6777777767664 222 378889999999976 56667766554
No 359
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=93.55 E-value=0.3 Score=43.75 Aligned_cols=46 Identities=13% Similarity=-0.071 Sum_probs=29.7
Q ss_pred HHhhCCCCCCCCEEEECCCCCchHHHhHHHHHHHhhhcccCCceEEEEc
Q 017196 60 QETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVL 108 (375)
Q Consensus 60 ~~~~~~~~~~~~~ii~a~TGsGKTl~~~l~il~~l~~~~~~~~~~lil~ 108 (375)
+.++..+..|.-++|.|++|+|||.-.+--+.+..... +..+++++
T Consensus 4 D~~~~Gl~~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~---g~~vly~s 49 (242)
T cd00984 4 DNLTGGLQPGDLIIIAARPSMGKTAFALNIAENIAKKQ---GKPVLFFS 49 (242)
T ss_pred hhhhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhC---CCceEEEe
Confidence 34455666788899999999999964332333333331 23578877
No 360
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=93.53 E-value=0.4 Score=46.90 Aligned_cols=20 Identities=35% Similarity=0.453 Sum_probs=16.4
Q ss_pred CCCEEEECCCCCchHHHhHH
Q 017196 69 ERDLCINSPTGSGKTLSYAL 88 (375)
Q Consensus 69 ~~~~ii~a~TGsGKTl~~~l 88 (375)
++.+++.+|||+|||.+.+-
T Consensus 221 ~~~i~~vGptGvGKTTt~~k 240 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAK 240 (424)
T ss_pred CcEEEEECCCCCCHHHHHHH
Confidence 56789999999999987543
No 361
>PF03237 Terminase_6: Terminase-like family; InterPro: IPR004921 The terminase is a component of the molecular motor that translocates genomic DNA into empty capsids during DNA packaging []. The large subunit heterodimerises with the small terminase protein, which is docked on the capsid portal protein. The latter forms a ring through which genomic DNA is translocated into the capsid. The terminase protein may have or induce an endonuclease activity to cleave DNA after encapsidation. This entry represents a family of terminase large subunits found in a variety of the Caudovirales and prophage regions of bacterial genomes. Homologues are also found in Gene Transfer Agents (GTA) [], including ORFg2 (RCAP_rcc01683) of the GTA of Rhodobacter capsulatus (Rhodopseudomonas capsulata) [see Fig.1, in ].; PDB: 2O0K_A 3CPE_A 2O0J_A 2O0H_A 3C6H_A 3C6A_A.
Probab=93.49 E-value=1.1 Score=42.33 Aligned_cols=42 Identities=29% Similarity=0.208 Sum_probs=24.8
Q ss_pred EEECCCCCchHHHhHHHHHHHhhhcccCCceEEEEcccHHHHHH
Q 017196 73 CINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQ 116 (375)
Q Consensus 73 ii~a~TGsGKTl~~~l~il~~l~~~~~~~~~~lil~Pt~~L~~Q 116 (375)
++.++.|+|||...+..++..+...+. ..+++++ +|..-+..
T Consensus 1 ~i~~~r~~GKT~~~~~~~~~~~~~~~~-~~~vi~~-~~~~~~~~ 42 (384)
T PF03237_consen 1 LINGGRGSGKTTLIAIWFLWWALTRPP-GRRVIIA-STYRQARD 42 (384)
T ss_dssp -EEE-SSS-HHHHHHHHHHHHHHSSSS---EEEEE-ESSHHHHH
T ss_pred CCcCCccccHHHHHHHHHHHHHhhCCC-CcEEEEe-cCHHHHHH
Confidence 467899999999887777777666532 2345555 65554443
No 362
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=93.46 E-value=0.53 Score=45.61 Aligned_cols=26 Identities=19% Similarity=0.387 Sum_probs=18.0
Q ss_pred CCEEEECCCCCchHHHhHHHHHHHhhh
Q 017196 70 RDLCINSPTGSGKTLSYALPIVQTLSN 96 (375)
Q Consensus 70 ~~~ii~a~TGsGKTl~~~l~il~~l~~ 96 (375)
+.+++.+|.|+|||..+.. +...+..
T Consensus 37 ha~Lf~Gp~G~GKt~lA~~-lA~~l~c 62 (394)
T PRK07940 37 HAWLFTGPPGSGRSVAARA-FAAALQC 62 (394)
T ss_pred eEEEEECCCCCcHHHHHHH-HHHHhCC
Confidence 4589999999999976533 3333433
No 363
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=93.45 E-value=0.41 Score=50.04 Aligned_cols=18 Identities=33% Similarity=0.438 Sum_probs=15.3
Q ss_pred CCEEEECCCCCchHHHhH
Q 017196 70 RDLCINSPTGSGKTLSYA 87 (375)
Q Consensus 70 ~~~ii~a~TGsGKTl~~~ 87 (375)
.++++.+|+|+|||..+.
T Consensus 53 ~slLL~GPpGtGKTTLA~ 70 (725)
T PRK13341 53 GSLILYGPPGVGKTTLAR 70 (725)
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 479999999999998643
No 364
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=93.37 E-value=1.1 Score=40.89 Aligned_cols=21 Identities=33% Similarity=0.468 Sum_probs=16.7
Q ss_pred CCCEEEECCCCCchHHHhHHH
Q 017196 69 ERDLCINSPTGSGKTLSYALP 89 (375)
Q Consensus 69 ~~~~ii~a~TGsGKTl~~~l~ 89 (375)
+..+.+.+++|+|||..+..-
T Consensus 75 ~~~i~~~G~~g~GKTtl~~~l 95 (270)
T PRK06731 75 VQTIALIGPTGVGKTTTLAKM 95 (270)
T ss_pred CCEEEEECCCCCcHHHHHHHH
Confidence 357899999999999865443
No 365
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=93.36 E-value=0.82 Score=46.78 Aligned_cols=54 Identities=11% Similarity=0.217 Sum_probs=34.4
Q ss_pred hcCCCcEEEe-CcHHHHHHHhhcCCCCCCCccEEEEecchhhhhHhHHhHHHHHHHhhh
Q 017196 169 LQSAVDILVA-TPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTR 226 (375)
Q Consensus 169 ~~~~~~IiV~-Tp~~l~~~l~~~~~~~~~~~~~vIiDE~h~l~~~~~~~~l~~i~~~l~ 226 (375)
+.++..=.|| -|+++.+.+...+..+. ++.+||+|.|.+...+.=-..+++.+-
T Consensus 392 IRGHRRTYIGamPGrIiQ~mkka~~~NP----v~LLDEIDKm~ss~rGDPaSALLEVLD 446 (782)
T COG0466 392 IRGHRRTYIGAMPGKIIQGMKKAGVKNP----VFLLDEIDKMGSSFRGDPASALLEVLD 446 (782)
T ss_pred hccccccccccCChHHHHHHHHhCCcCC----eEEeechhhccCCCCCChHHHHHhhcC
Confidence 3454455555 59999999988554443 899999999965432222344444443
No 366
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=93.36 E-value=0.6 Score=44.86 Aligned_cols=43 Identities=16% Similarity=0.116 Sum_probs=27.8
Q ss_pred cHhhHHHHHHhhCCCCCCCCEEEECCCCCchHHHhHHHHHHHhhh
Q 017196 52 FPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSN 96 (375)
Q Consensus 52 ~~~Q~~~~~~~~~~~~~~~~~ii~a~TGsGKTl~~~l~il~~l~~ 96 (375)
.+.-.++++.++ .+-.|+.++|.||.|+|||.. +--+...+..
T Consensus 153 ~~~~~rvID~l~-PIGkGQR~lIvgppGvGKTTL-aK~Ian~I~~ 195 (416)
T PRK09376 153 EDLSTRIIDLIA-PIGKGQRGLIVAPPKAGKTVL-LQNIANSITT 195 (416)
T ss_pred cccceeeeeeec-ccccCceEEEeCCCCCChhHH-HHHHHHHHHh
Confidence 444445554433 344788999999999999964 3335555544
No 367
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.33 E-value=0.14 Score=52.39 Aligned_cols=21 Identities=19% Similarity=0.184 Sum_probs=16.5
Q ss_pred CCEEEECCCCCchHHHhHHHH
Q 017196 70 RDLCINSPTGSGKTLSYALPI 90 (375)
Q Consensus 70 ~~~ii~a~TGsGKTl~~~l~i 90 (375)
+..++.+|.|+|||.++.+-+
T Consensus 39 ha~Lf~Gp~GvGKttlA~~lA 59 (620)
T PRK14954 39 HGYIFSGLRGVGKTTAARVFA 59 (620)
T ss_pred eeEEEECCCCCCHHHHHHHHH
Confidence 348899999999998765433
No 368
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=93.32 E-value=0.23 Score=42.66 Aligned_cols=33 Identities=30% Similarity=0.396 Sum_probs=26.6
Q ss_pred CccHhhHHHHHHhhCCCCCCCCEEEECCCCCchHHH
Q 017196 50 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLS 85 (375)
Q Consensus 50 ~~~~~Q~~~~~~~~~~~~~~~~~ii~a~TGsGKTl~ 85 (375)
...+.|...+...+. .+..+++.+|||||||..
T Consensus 9 ~~~~~~~~~l~~~v~---~g~~i~I~G~tGSGKTTl 41 (186)
T cd01130 9 TFSPLQAAYLWLAVE---ARKNILISGGTGSGKTTL 41 (186)
T ss_pred CCCHHHHHHHHHHHh---CCCEEEEECCCCCCHHHH
Confidence 566777777766665 688999999999999974
No 369
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=93.30 E-value=0.53 Score=50.62 Aligned_cols=82 Identities=16% Similarity=0.287 Sum_probs=61.7
Q ss_pred CceEEEEcccHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhh-cCCCcEEEeC
Q 017196 101 CLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQEL-QSAVDILVAT 179 (375)
Q Consensus 101 ~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~IiV~T 179 (375)
+.+++|++|+++-++.+++.++++.+ ++++..++|+.+...... ..... .+..+|+|||
T Consensus 660 g~qv~if~n~i~~~e~l~~~L~~~~p--~~~v~~lHG~m~~~eRe~------------------im~~F~~Gk~~ILVaT 719 (926)
T TIGR00580 660 GGQVFYVHNRIESIEKLATQLRELVP--EARIAIAHGQMTENELEE------------------VMLEFYKGEFQVLVCT 719 (926)
T ss_pred CCeEEEEECCcHHHHHHHHHHHHhCC--CCeEEEecCCCCHHHHHH------------------HHHHHHcCCCCEEEEC
Confidence 34799999999999989888888765 578999999876544321 22222 3458999999
Q ss_pred cHHHHHHHhhcCCCCCCCccEEEEecchhh
Q 017196 180 PGRLMDHINATRGFTLEHLCYLVVDETDRL 209 (375)
Q Consensus 180 p~~l~~~l~~~~~~~~~~~~~vIiDE~h~l 209 (375)
. .+. .++++.++++||++.++++
T Consensus 720 ~-----iie--~GIDIp~v~~VIi~~a~~~ 742 (926)
T TIGR00580 720 T-----IIE--TGIDIPNANTIIIERADKF 742 (926)
T ss_pred C-----hhh--cccccccCCEEEEecCCCC
Confidence 4 222 4689999999999999865
No 370
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=93.29 E-value=1.3 Score=37.28 Aligned_cols=17 Identities=29% Similarity=0.319 Sum_probs=13.8
Q ss_pred EEEECCCCCchHHHhHH
Q 017196 72 LCINSPTGSGKTLSYAL 88 (375)
Q Consensus 72 ~ii~a~TGsGKTl~~~l 88 (375)
+++.+++|+|||....-
T Consensus 3 ~~~~G~~G~GKTt~~~~ 19 (173)
T cd03115 3 ILLVGLQGVGKTTTAAK 19 (173)
T ss_pred EEEECCCCCCHHHHHHH
Confidence 57889999999986533
No 371
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.27 E-value=0.47 Score=47.31 Aligned_cols=20 Identities=25% Similarity=0.403 Sum_probs=15.5
Q ss_pred CCCccEEEEecchhhhhHhH
Q 017196 195 LEHLCYLVVDETDRLLREAY 214 (375)
Q Consensus 195 ~~~~~~vIiDE~h~l~~~~~ 214 (375)
....+++||||+|.+....+
T Consensus 117 ~~~~KVvIIDEad~Lt~~a~ 136 (486)
T PRK14953 117 KGKYKVYIIDEAHMLTKEAF 136 (486)
T ss_pred cCCeeEEEEEChhhcCHHHH
Confidence 35678999999998865554
No 372
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=93.27 E-value=0.37 Score=47.58 Aligned_cols=25 Identities=20% Similarity=0.313 Sum_probs=17.8
Q ss_pred CCEEEECCCCCchHHHhHHHHHHHhh
Q 017196 70 RDLCINSPTGSGKTLSYALPIVQTLS 95 (375)
Q Consensus 70 ~~~ii~a~TGsGKTl~~~l~il~~l~ 95 (375)
+..++.||.|+|||..+.. +...+.
T Consensus 40 ha~Lf~Gp~G~GKtt~A~~-lAk~l~ 64 (451)
T PRK06305 40 HAYLFSGIRGTGKTTLARI-FAKALN 64 (451)
T ss_pred eEEEEEcCCCCCHHHHHHH-HHHHhc
Confidence 4478999999999987544 334443
No 373
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=93.16 E-value=1.3 Score=43.96 Aligned_cols=23 Identities=30% Similarity=0.278 Sum_probs=17.6
Q ss_pred CCCCEEEECCCCCchHHHhHHHH
Q 017196 68 FERDLCINSPTGSGKTLSYALPI 90 (375)
Q Consensus 68 ~~~~~ii~a~TGsGKTl~~~l~i 90 (375)
.|+-+.+.+|||+|||.+....+
T Consensus 255 ~g~Vi~LvGpnGvGKTTTiaKLA 277 (484)
T PRK06995 255 RGGVFALMGPTGVGKTTTTAKLA 277 (484)
T ss_pred CCcEEEEECCCCccHHHHHHHHH
Confidence 34568899999999999765433
No 374
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=93.16 E-value=0.87 Score=42.86 Aligned_cols=93 Identities=16% Similarity=0.139 Sum_probs=55.8
Q ss_pred ccHhhHHHHHHhhCCCCCCC---CEEEECCCCCchHHHhHHHHHHHhhhcc------------------cCCceEEEEcc
Q 017196 51 LFPVQVAVWQETIGPGLFER---DLCINSPTGSGKTLSYALPIVQTLSNRA------------------VRCLRALVVLP 109 (375)
Q Consensus 51 ~~~~Q~~~~~~~~~~~~~~~---~~ii~a~TGsGKTl~~~l~il~~l~~~~------------------~~~~~~lil~P 109 (375)
.+|||...|+.+...+..|+ -.++.||.|.||+..+. .+...+.+.. ...|-..++.|
T Consensus 3 ~yPW~~~~~~~l~~~~~~~rl~HA~Lf~G~~G~GK~~lA~-~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p 81 (325)
T PRK06871 3 LYPWLQPTYQQITQAFQQGLGHHALLFKADSGLGTEQLIR-ALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHILEP 81 (325)
T ss_pred CCcchHHHHHHHHHHHHcCCcceeEEeECCCCCCHHHHHH-HHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEcc
Confidence 47899999998887665654 47899999999997643 3334443321 11234666777
Q ss_pred c--H-HHHHHHHHHHHHh---ccccCceEEEeecCCchHHH
Q 017196 110 T--R-DLALQVKDVFAAI---APAVGLSVGLAVGQSSIADE 144 (375)
Q Consensus 110 t--~-~L~~Q~~~~~~~~---~~~~~~~v~~~~~~~~~~~~ 144 (375)
. . --++|+.+..+.+ ....+.+|..+.........
T Consensus 82 ~~~~~I~id~iR~l~~~~~~~~~~g~~KV~iI~~a~~m~~~ 122 (325)
T PRK06871 82 IDNKDIGVDQVREINEKVSQHAQQGGNKVVYIQGAERLTEA 122 (325)
T ss_pred ccCCCCCHHHHHHHHHHHhhccccCCceEEEEechhhhCHH
Confidence 2 1 1244444433332 22235788888877666544
No 375
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=93.12 E-value=1.1 Score=44.72 Aligned_cols=65 Identities=18% Similarity=0.125 Sum_probs=42.6
Q ss_pred HHHHHhh-CCCCCCCCEEEECCCCCchHHHhHHHHHHHhhhcccCCceEEEEcccHHHHHHHHHHHHHhcc
Q 017196 57 AVWQETI-GPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAP 126 (375)
Q Consensus 57 ~~~~~~~-~~~~~~~~~ii~a~TGsGKTl~~~l~il~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~ 126 (375)
..++.++ ..+..|.-++|.+|+|+|||.-.+--+...+.+. -+++|++ +.|-..|+.+.++.+..
T Consensus 250 ~~lD~~lgGG~~~gs~~li~G~~G~GKt~l~~~f~~~~~~~g----e~~~y~s-~eEs~~~i~~~~~~lg~ 315 (484)
T TIGR02655 250 VRLDEMCGGGFFKDSIILATGATGTGKTLLVSKFLENACANK----ERAILFA-YEESRAQLLRNAYSWGI 315 (484)
T ss_pred HhHHHHhcCCccCCcEEEEECCCCCCHHHHHHHHHHHHHHCC----CeEEEEE-eeCCHHHHHHHHHHcCC
Confidence 3445555 2344677799999999999986444444433332 2577766 56667788888887743
No 376
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.10 E-value=0.43 Score=48.98 Aligned_cols=18 Identities=28% Similarity=0.407 Sum_probs=14.9
Q ss_pred CEEEECCCCCchHHHhHH
Q 017196 71 DLCINSPTGSGKTLSYAL 88 (375)
Q Consensus 71 ~~ii~a~TGsGKTl~~~l 88 (375)
-.+++||.|+|||.++.+
T Consensus 41 ayLf~Gp~G~GKtt~A~~ 58 (614)
T PRK14971 41 AYLFCGPRGVGKTTCARI 58 (614)
T ss_pred eEEEECCCCCCHHHHHHH
Confidence 479999999999986544
No 377
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.06 E-value=0.5 Score=48.57 Aligned_cols=26 Identities=27% Similarity=0.464 Sum_probs=18.6
Q ss_pred CCEEEECCCCCchHHHhHHHHHHHhhh
Q 017196 70 RDLCINSPTGSGKTLSYALPIVQTLSN 96 (375)
Q Consensus 70 ~~~ii~a~TGsGKTl~~~l~il~~l~~ 96 (375)
..+++.||.|+|||..+.. +...+..
T Consensus 39 ~a~Lf~Gp~G~GKttlA~~-lAk~L~c 64 (620)
T PRK14948 39 PAYLFTGPRGTGKTSSARI-LAKSLNC 64 (620)
T ss_pred ceEEEECCCCCChHHHHHH-HHHHhcC
Confidence 4579999999999987544 4444433
No 378
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=93.05 E-value=0.75 Score=41.35 Aligned_cols=19 Identities=32% Similarity=0.506 Sum_probs=16.0
Q ss_pred CCCCCEEEECCCCCchHHH
Q 017196 67 LFERDLCINSPTGSGKTLS 85 (375)
Q Consensus 67 ~~~~~~ii~a~TGsGKTl~ 85 (375)
...+.+++.+|.|+|||+.
T Consensus 203 ~pPKGvLmYGPPGTGKTlm 221 (424)
T KOG0652|consen 203 RPPKGVLMYGPPGTGKTLM 221 (424)
T ss_pred CCCCceEeeCCCCCcHHHH
Confidence 3457799999999999984
No 379
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=93.05 E-value=0.67 Score=45.14 Aligned_cols=68 Identities=18% Similarity=0.135 Sum_probs=35.9
Q ss_pred CCCCEEEECCCCCchHHHhHHHHHHHhhhcccCCceEEEEcccHHHHHHHHHHHHHhccccCceEEEeecC
Q 017196 68 FERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQ 138 (375)
Q Consensus 68 ~~~~~ii~a~TGsGKTl~~~l~il~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~~~ 138 (375)
.|.-+.+.+|||+|||.....-+-..+.... ...-.++...+...+ ....+..++...++.+......
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~~~~~~~~-~~~v~~i~~d~~rig--alEQL~~~a~ilGvp~~~v~~~ 257 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAARAVIRHG-ADKVALLTTDSYRIG--GHEQLRIYGKLLGVSVRSIKDI 257 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcC-CCeEEEEecCCcchh--HHHHHHHHHHHcCCceecCCCH
Confidence 4566899999999999875433332222221 112356666663322 2222444444446665544443
No 380
>PRK09354 recA recombinase A; Provisional
Probab=93.01 E-value=1.4 Score=41.75 Aligned_cols=52 Identities=21% Similarity=0.095 Sum_probs=32.4
Q ss_pred HHHhhC--CCCCCCCEEEECCCCCchHHHhHHHHHHHhhhcccCCceEEEEcccHHHH
Q 017196 59 WQETIG--PGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLA 114 (375)
Q Consensus 59 ~~~~~~--~~~~~~~~ii~a~TGsGKTl~~~l~il~~l~~~~~~~~~~lil~Pt~~L~ 114 (375)
++.++. .+..|+-+.|.+|.|||||..++-.+.+.... +..++|+..-..+-
T Consensus 48 LD~~LG~GGip~G~IteI~G~~GsGKTtLal~~~~~~~~~----G~~~~yId~E~s~~ 101 (349)
T PRK09354 48 LDIALGIGGLPRGRIVEIYGPESSGKTTLALHAIAEAQKA----GGTAAFIDAEHALD 101 (349)
T ss_pred HHHHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHHHHHHc----CCcEEEECCccchH
Confidence 444443 45567778899999999998654444443332 23577777655444
No 381
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=93.01 E-value=0.19 Score=51.15 Aligned_cols=39 Identities=18% Similarity=0.411 Sum_probs=28.9
Q ss_pred hcCCCcEEEe-CcHHHHHHHhhcCCCCCCCccEEEEecchhhhh
Q 017196 169 LQSAVDILVA-TPGRLMDHINATRGFTLEHLCYLVVDETDRLLR 211 (375)
Q Consensus 169 ~~~~~~IiV~-Tp~~l~~~l~~~~~~~~~~~~~vIiDE~h~l~~ 211 (375)
+.++..=.|| .|+++.+++++.+.-+. ++.+||+|.+..
T Consensus 480 IkGHRRTYVGAMPGkiIq~LK~v~t~NP----liLiDEvDKlG~ 519 (906)
T KOG2004|consen 480 IKGHRRTYVGAMPGKIIQCLKKVKTENP----LILIDEVDKLGS 519 (906)
T ss_pred hcccceeeeccCChHHHHHHHhhCCCCc----eEEeehhhhhCC
Confidence 4555566665 59999999988553333 899999999974
No 382
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=92.95 E-value=1.4 Score=42.68 Aligned_cols=19 Identities=32% Similarity=0.499 Sum_probs=16.0
Q ss_pred CCCCEEEECCCCCchHHHh
Q 017196 68 FERDLCINSPTGSGKTLSY 86 (375)
Q Consensus 68 ~~~~~ii~a~TGsGKTl~~ 86 (375)
..+.+++.+|+|||||+.+
T Consensus 164 ~p~gvLL~GppGtGKT~lA 182 (389)
T PRK03992 164 PPKGVLLYGPPGTGKTLLA 182 (389)
T ss_pred CCCceEEECCCCCChHHHH
Confidence 4567999999999999853
No 383
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=92.93 E-value=0.59 Score=47.67 Aligned_cols=145 Identities=20% Similarity=0.202 Sum_probs=68.9
Q ss_pred CCCCCCEEEECCCCCchHHHhHHHHHHHhhhcccCCceEEEEcccHHHHHHHHHHHHHhccccCceEEEeecC-------
Q 017196 66 GLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQ------- 138 (375)
Q Consensus 66 ~~~~~~~ii~a~TGsGKTl~~~l~il~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~~~------- 138 (375)
+..|..+.+.+|||||||.. +-++.++... ....++| .-.++.+=....+++......-....+.|.
T Consensus 352 i~~Ge~vaiVG~sGsGKSTl--~~LL~r~~~~--~~G~I~i--dg~dI~~i~~~~lr~~I~~V~Qd~~LF~~TI~~NI~~ 425 (567)
T COG1132 352 IEPGEKVAIVGPSGSGKSTL--IKLLLRLYDP--TSGEILI--DGIDIRDISLDSLRKRIGIVSQDPLLFSGTIRENIAL 425 (567)
T ss_pred EcCCCEEEEECCCCCCHHHH--HHHHhccCCC--CCCeEEE--CCEehhhcCHHHHHHhccEEcccceeecccHHHHHhc
Confidence 34788899999999999863 4445555543 2223444 333333322233332221111122222211
Q ss_pred --C-chHHHHHHHhhcCccccCccCCchhHHHhhcCCCcEEEeCcHHHHHHHhhcCC----CCCCCccEEEEecchhhhh
Q 017196 139 --S-SIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRG----FTLEHLCYLVVDETDRLLR 211 (375)
Q Consensus 139 --~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiV~Tp~~l~~~l~~~~~----~~~~~~~~vIiDE~h~l~~ 211 (375)
. ..+++..+..+. ....+....++.+++-.|+--+.-++.=++.+- .-+++..++|+||+-.-++
T Consensus 426 g~~~at~eei~~a~k~--------a~~~d~I~~lp~g~dt~vge~G~~LSgGQrQrlaiARall~~~~ILILDEaTSalD 497 (567)
T COG1132 426 GRPDATDEEIEEALKL--------ANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIARALLRNPPILILDEATSALD 497 (567)
T ss_pred CCCCCCHHHHHHHHHH--------hChHHHHHhCcccccceecCCCccCCHHHHHHHHHHHHHhcCCCEEEEeccccccC
Confidence 1 011111111110 012333344566778888743322221111000 1256678999999998888
Q ss_pred HhHHhHHHHHHHh
Q 017196 212 EAYQAWLPTVLQL 224 (375)
Q Consensus 212 ~~~~~~l~~i~~~ 224 (375)
......+...+..
T Consensus 498 ~~tE~~I~~~l~~ 510 (567)
T COG1132 498 TETEALIQDALKK 510 (567)
T ss_pred HHhHHHHHHHHHH
Confidence 7655555555543
No 384
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=92.89 E-value=0.19 Score=47.68 Aligned_cols=42 Identities=24% Similarity=0.320 Sum_probs=29.3
Q ss_pred CCCCEEEECCCCCchHHHhHHHHHHHhhhcccCCceEEEEcccHHHH
Q 017196 68 FERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLA 114 (375)
Q Consensus 68 ~~~~~ii~a~TGsGKTl~~~l~il~~l~~~~~~~~~~lil~Pt~~L~ 114 (375)
.+++++|+++||||||.. +-.++..+.. .-+++.+-.+.||.
T Consensus 161 ~~~nilI~G~tGSGKTTl-l~aLl~~i~~----~~rivtiEd~~El~ 202 (344)
T PRK13851 161 GRLTMLLCGPTGSGKTTM-SKTLISAIPP----QERLITIEDTLELV 202 (344)
T ss_pred cCCeEEEECCCCccHHHH-HHHHHcccCC----CCCEEEECCCcccc
Confidence 678999999999999973 3334433322 23677777887763
No 385
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=92.85 E-value=1.3 Score=43.78 Aligned_cols=61 Identities=18% Similarity=0.180 Sum_probs=37.0
Q ss_pred HHHhhC-CCCCCCCEEEECCCCCchHHHhHHHHHHHhhhcccCCceEEEEcccHHHHHHHHHHHHHh
Q 017196 59 WQETIG-PGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAI 124 (375)
Q Consensus 59 ~~~~~~-~~~~~~~~ii~a~TGsGKTl~~~l~il~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~ 124 (375)
++.++. .+..|.-+++.+++|+|||.-. +-+...+... +.+++|+.-- +-..|+...+.++
T Consensus 83 LD~vLgGGi~~GsvilI~G~pGsGKTTL~-lq~a~~~a~~---g~kvlYvs~E-Es~~qi~~ra~rl 144 (454)
T TIGR00416 83 LDRVLGGGIVPGSLILIGGDPGIGKSTLL-LQVACQLAKN---QMKVLYVSGE-ESLQQIKMRAIRL 144 (454)
T ss_pred HHHHhcCCccCCeEEEEEcCCCCCHHHHH-HHHHHHHHhc---CCcEEEEECc-CCHHHHHHHHHHc
Confidence 444442 3446677899999999999754 3343333332 2258887653 4456666666654
No 386
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=92.81 E-value=0.76 Score=46.48 Aligned_cols=61 Identities=20% Similarity=0.211 Sum_probs=39.1
Q ss_pred cCCCCccCccccCC-CCCCCCCCHHHHHHHHhCCCCCccHhhHHHHHHhhCCCCCCCCEEEECCCCCchHHHh
Q 017196 15 MRSPVDVSLFEDCP-LDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSY 86 (375)
Q Consensus 15 ~~~~~~~~~~~~~~-~~~~~~l~~~i~~~l~~~g~~~~~~~Q~~~~~~~~~~~~~~~~~ii~a~TGsGKTl~~ 86 (375)
...+.+-.+|++++ +++ +..++.+... +...+|..+.... + ..-+.|++.+|.|+|||+.+
T Consensus 424 ~~ve~p~v~W~dIGGlE~---lK~elq~~V~-~p~~~pe~F~r~G----i---~ppkGVLlyGPPGC~KT~lA 485 (693)
T KOG0730|consen 424 ILVEMPNVSWDDIGGLEE---LKRELQQAVE-WPLKHPEKFARFG----I---SPPKGVLLYGPPGCGKTLLA 485 (693)
T ss_pred eeccCCCCChhhccCHHH---HHHHHHHHHh-hhhhchHHHHHhc----C---CCCceEEEECCCCcchHHHH
Confidence 33556677899998 222 3333333332 4556666666553 2 24578999999999999864
No 387
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=92.72 E-value=1.6 Score=40.11 Aligned_cols=45 Identities=16% Similarity=0.262 Sum_probs=28.1
Q ss_pred CEEEECCCCCchHHHhHHHHHHHhhhcccCCceEEEEcccHHHHHHHHHHHHH
Q 017196 71 DLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAA 123 (375)
Q Consensus 71 ~~ii~a~TGsGKTl~~~l~il~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~ 123 (375)
.+++-+|.|+||+..+-- +-... . -+++-+.+-.|+..|...-++
T Consensus 168 giLLyGPPGTGKSYLAKA-----VATEA-n--STFFSvSSSDLvSKWmGESEk 212 (439)
T KOG0739|consen 168 GILLYGPPGTGKSYLAKA-----VATEA-N--STFFSVSSSDLVSKWMGESEK 212 (439)
T ss_pred eEEEeCCCCCcHHHHHHH-----HHhhc-C--CceEEeehHHHHHHHhccHHH
Confidence 489999999999864321 11211 1 367777777777666554443
No 388
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=92.65 E-value=0.7 Score=45.59 Aligned_cols=93 Identities=17% Similarity=0.410 Sum_probs=69.8
Q ss_pred HHHhhhcccCCceEEEEcccHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhc
Q 017196 91 VQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQ 170 (375)
Q Consensus 91 l~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (375)
+..+.....++-|++|.+=|+..|+++...+.+. |+++..++++...-+. .++.+.+.
T Consensus 436 ~~EI~~r~~~~eRvLVTtLTKkmAEdLT~Yl~e~----gikv~YlHSdidTlER------------------~eIirdLR 493 (663)
T COG0556 436 LSEIRKRVAKNERVLVTTLTKKMAEDLTEYLKEL----GIKVRYLHSDIDTLER------------------VEIIRDLR 493 (663)
T ss_pred HHHHHHHHhcCCeEEEEeehHHHHHHHHHHHHhc----CceEEeeeccchHHHH------------------HHHHHHHh
Confidence 3344443345568999999999999888888776 8999999998766554 34455565
Q ss_pred CC-CcEEEeCcHHHHHHHhhcCCCCCCCccEEEEecchhhhhHhHH
Q 017196 171 SA-VDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQ 215 (375)
Q Consensus 171 ~~-~~IiV~Tp~~l~~~l~~~~~~~~~~~~~vIiDE~h~l~~~~~~ 215 (375)
.| +||+|| .++++. ++++..+++|.|=+|| ..+|.
T Consensus 494 ~G~~DvLVG-----INLLRE--GLDiPEVsLVAIlDAD---KeGFL 529 (663)
T COG0556 494 LGEFDVLVG-----INLLRE--GLDLPEVSLVAILDAD---KEGFL 529 (663)
T ss_pred cCCccEEEe-----ehhhhc--cCCCcceeEEEEeecC---ccccc
Confidence 54 999999 467776 5899999999998898 44554
No 389
>PTZ00293 thymidine kinase; Provisional
Probab=92.64 E-value=0.27 Score=43.08 Aligned_cols=40 Identities=23% Similarity=0.252 Sum_probs=25.7
Q ss_pred CCCEEEECCCCCchHHHhHHHHHHHhhhcccCCceEEEEcccHH
Q 017196 69 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRD 112 (375)
Q Consensus 69 ~~~~ii~a~TGsGKTl~~~l~il~~l~~~~~~~~~~lil~Pt~~ 112 (375)
|.=-++.+|+++|||.- ++-.+.+... .+.+++++-|..+
T Consensus 4 G~i~vi~GpMfSGKTte-LLr~i~~y~~---ag~kv~~~kp~~D 43 (211)
T PTZ00293 4 GTISVIIGPMFSGKTTE-LMRLVKRFTY---SEKKCVVIKYSKD 43 (211)
T ss_pred eEEEEEECCCCChHHHH-HHHHHHHHHH---cCCceEEEEeccc
Confidence 44457899999999964 3333333322 3346888888754
No 390
>cd01126 TraG_VirD4 The TraG/TraD/VirD4 family are bacterial conjugation proteins involved in type IV secretion. These proteins aid the transfer of DNA from the plasmid into the host bacterial chromosome. They contain an ATP binding domain. VirD4 is involved in DNA transfer to plant cells and is required for virulence.
Probab=92.58 E-value=0.11 Score=50.30 Aligned_cols=48 Identities=21% Similarity=0.277 Sum_probs=37.5
Q ss_pred CEEEECCCCCchHHHhHHHHHHHhhhcccCCceEEEEcccHHHHHHHHHHHHHh
Q 017196 71 DLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAI 124 (375)
Q Consensus 71 ~~ii~a~TGsGKTl~~~l~il~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~ 124 (375)
++++.||||+|||.++++|-+.... ..+||+=|-.++...+....+..
T Consensus 1 H~lv~g~tGsGKt~~~viP~ll~~~------~s~vv~D~Kge~~~~t~~~r~~~ 48 (384)
T cd01126 1 HVLVFAPTRSGKGVGFVIPNLLTWP------GSVVVLDPKGENFELTSEHRRAL 48 (384)
T ss_pred CeeEecCCCCCCccEEEccchhcCC------CCEEEEccchhHHHHHHHHHHHc
Confidence 4789999999999999888765321 24899999999988777666543
No 391
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=92.55 E-value=2.3 Score=37.31 Aligned_cols=46 Identities=20% Similarity=0.104 Sum_probs=28.2
Q ss_pred HHHhhC-CCCCCCCEEEECCCCCchHHHhHHHHHHHhhhcccCCceEEEEc
Q 017196 59 WQETIG-PGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVL 108 (375)
Q Consensus 59 ~~~~~~-~~~~~~~~ii~a~TGsGKTl~~~l~il~~l~~~~~~~~~~lil~ 108 (375)
++.++. .+..|.-+.|.++.|+|||..++-.+.+.... +.+++++.
T Consensus 8 LD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~~a~~~~~~----g~~v~yi~ 54 (218)
T cd01394 8 LDELLGGGVERGTVTQVYGPPGTGKTNIAIQLAVETAGQ----GKKVAYID 54 (218)
T ss_pred HHHHhcCCccCCeEEEEECCCCCCHHHHHHHHHHHHHhc----CCeEEEEE
Confidence 444553 44566778899999999997644433333322 23577773
No 392
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=92.53 E-value=0.093 Score=47.89 Aligned_cols=37 Identities=16% Similarity=0.039 Sum_probs=27.5
Q ss_pred ccHhhHHHHHHhhCCCCCCCCEEEECCCCCchHHHhH
Q 017196 51 LFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYA 87 (375)
Q Consensus 51 ~~~~Q~~~~~~~~~~~~~~~~~ii~a~TGsGKTl~~~ 87 (375)
.++..++..+.++..+..|..+++.+|+|+|||..+.
T Consensus 3 ~t~~~~~l~~~~l~~l~~g~~vLL~G~~GtGKT~lA~ 39 (262)
T TIGR02640 3 ETDAVKRVTSRALRYLKSGYPVHLRGPAGTGKTTLAM 39 (262)
T ss_pred CCHHHHHHHHHHHHHHhcCCeEEEEcCCCCCHHHHHH
Confidence 3455555555566556688999999999999998653
No 393
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=92.50 E-value=0.55 Score=47.43 Aligned_cols=29 Identities=28% Similarity=0.328 Sum_probs=21.2
Q ss_pred CCCCCCEEEECCCCCchHHHhHHHHHHHhhh
Q 017196 66 GLFERDLCINSPTGSGKTLSYALPIVQTLSN 96 (375)
Q Consensus 66 ~~~~~~~ii~a~TGsGKTl~~~l~il~~l~~ 96 (375)
+..|+-+.+.+|+|+|||. ++-++..+..
T Consensus 358 i~~G~~vaIvG~SGsGKST--Ll~lL~g~~~ 386 (529)
T TIGR02868 358 LPPGERVAILGPSGSGKST--LLMLLTGLLD 386 (529)
T ss_pred EcCCCEEEEECCCCCCHHH--HHHHHhcCCC
Confidence 3478889999999999997 3444444443
No 394
>PRK10689 transcription-repair coupling factor; Provisional
Probab=92.49 E-value=0.85 Score=50.28 Aligned_cols=82 Identities=13% Similarity=0.257 Sum_probs=60.6
Q ss_pred CceEEEEcccHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHh-hcCCCcEEEeC
Q 017196 101 CLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQE-LQSAVDILVAT 179 (375)
Q Consensus 101 ~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~IiV~T 179 (375)
+.+++|++|+++-++.+.+.+++..+ +.++..++|+-+...... .... ..+..+|+|||
T Consensus 809 ~gqv~vf~n~i~~ie~la~~L~~~~p--~~~v~~lHG~m~q~eRe~------------------im~~Fr~Gk~~VLVaT 868 (1147)
T PRK10689 809 GGQVYYLYNDVENIQKAAERLAELVP--EARIAIGHGQMRERELER------------------VMNDFHHQRFNVLVCT 868 (1147)
T ss_pred CCeEEEEECCHHHHHHHHHHHHHhCC--CCcEEEEeCCCCHHHHHH------------------HHHHHHhcCCCEEEEC
Confidence 34799999999999889988888765 467888998865543321 1122 23568999999
Q ss_pred cHHHHHHHhhcCCCCCCCccEEEEecchhh
Q 017196 180 PGRLMDHINATRGFTLEHLCYLVVDETDRL 209 (375)
Q Consensus 180 p~~l~~~l~~~~~~~~~~~~~vIiDE~h~l 209 (375)
. .+. +++++.++++||++.+|++
T Consensus 869 d-----Iie--rGIDIP~v~~VIi~~ad~f 891 (1147)
T PRK10689 869 T-----IIE--TGIDIPTANTIIIERADHF 891 (1147)
T ss_pred c-----hhh--cccccccCCEEEEecCCCC
Confidence 3 222 4689999999999999865
No 395
>PHA00350 putative assembly protein
Probab=92.48 E-value=0.45 Score=45.86 Aligned_cols=26 Identities=23% Similarity=0.296 Sum_probs=18.1
Q ss_pred EEEECCCCCchHHHhHH-HHHHHhhhc
Q 017196 72 LCINSPTGSGKTLSYAL-PIVQTLSNR 97 (375)
Q Consensus 72 ~ii~a~TGsGKTl~~~l-~il~~l~~~ 97 (375)
.++.+..|||||+.++- -++..++.+
T Consensus 4 ~l~tG~pGSGKT~~aV~~~i~palk~G 30 (399)
T PHA00350 4 YAIVGRPGSYKSYEAVVYHIIPALKDG 30 (399)
T ss_pred EEEecCCCCchhHHHHHHHHHHHHHCC
Confidence 47789999999997654 344444444
No 396
>PHA03372 DNA packaging terminase subunit 1; Provisional
Probab=92.42 E-value=2 Score=43.41 Aligned_cols=78 Identities=18% Similarity=0.217 Sum_probs=50.6
Q ss_pred CCHHHHHHHHh-CCCCCccHhhHHHHHHhhCCCCCCCCEEEECCCCCchHHHhHHHHHHHhhhcccCCceEEEEcccHHH
Q 017196 35 LDPRLKVALQN-MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDL 113 (375)
Q Consensus 35 l~~~i~~~l~~-~g~~~~~~~Q~~~~~~~~~~~~~~~~~ii~a~TGsGKTl~~~l~il~~l~~~~~~~~~~lil~Pt~~L 113 (375)
+...+.+.|+. +|+.....--.+. + +.+--++--|--.|||+ ++.|++..+... ..+-++-|++.-+..
T Consensus 175 ~a~r~~~~lk~~Fdi~~~s~~~l~~----F----KQkaTVFLVPRRHGKTW-f~VpiIsllL~s-~~gI~IGYvAHqKhv 244 (668)
T PHA03372 175 LANRVLEYLLHVFDIEFLSESSLNI----F----KQKATVFLVPRRHGKTW-FIIPIISFLLKN-IIGISIGYVAHQKHV 244 (668)
T ss_pred HHHHHHHHHHHHcCCcccCHHHHHH----h----hccceEEEecccCCcee-hHHHHHHHHHHh-hcCceEEEEeeHHHH
Confidence 33444555543 4554444333222 2 45556777899999998 577888877774 356689999998887
Q ss_pred HHHHHHHHH
Q 017196 114 ALQVKDVFA 122 (375)
Q Consensus 114 ~~Q~~~~~~ 122 (375)
++-++.++.
T Consensus 245 s~~Vf~EI~ 253 (668)
T PHA03372 245 SQFVLKEVE 253 (668)
T ss_pred HHHHHHHHH
Confidence 776666654
No 397
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=92.37 E-value=0.66 Score=43.48 Aligned_cols=52 Identities=19% Similarity=0.078 Sum_probs=31.4
Q ss_pred HHHHhhC--CCCCCCCEEEECCCCCchHHHhHHHHHHHhhhcccCCceEEEEcccHHH
Q 017196 58 VWQETIG--PGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDL 113 (375)
Q Consensus 58 ~~~~~~~--~~~~~~~~ii~a~TGsGKTl~~~l~il~~l~~~~~~~~~~lil~Pt~~L 113 (375)
+++.++. .+..|+-+.|.+|.|||||.-++ .++....+. +.+++++-.-..+
T Consensus 42 ~LD~~Lg~GGlp~G~iteI~G~~GsGKTtLaL-~~~~~~~~~---g~~v~yId~E~~~ 95 (321)
T TIGR02012 42 SLDLALGVGGLPRGRIIEIYGPESSGKTTLAL-HAIAEAQKA---GGTAAFIDAEHAL 95 (321)
T ss_pred HHHHHhcCCCCcCCeEEEEECCCCCCHHHHHH-HHHHHHHHc---CCcEEEEcccchh
Confidence 3444443 55577778999999999997544 333333332 2357777554433
No 398
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=92.34 E-value=0.69 Score=42.41 Aligned_cols=21 Identities=24% Similarity=0.180 Sum_probs=16.0
Q ss_pred CCEEEECCCCCchHHHhHHHH
Q 017196 70 RDLCINSPTGSGKTLSYALPI 90 (375)
Q Consensus 70 ~~~ii~a~TGsGKTl~~~l~i 90 (375)
+-+++.+++|+|||.+..-.+
T Consensus 73 ~vi~l~G~~G~GKTTt~akLA 93 (272)
T TIGR00064 73 NVILFVGVNGVGKTTTIAKLA 93 (272)
T ss_pred eEEEEECCCCCcHHHHHHHHH
Confidence 457788999999998755444
No 399
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=92.33 E-value=0.41 Score=43.89 Aligned_cols=18 Identities=17% Similarity=0.362 Sum_probs=15.4
Q ss_pred EcCChhhHHHHHHHHHHh
Q 017196 338 FTSSVESTHRLCTLLNHF 355 (375)
Q Consensus 338 F~~s~~~a~~l~~~L~~~ 355 (375)
+.+..+.++++++.|.-.
T Consensus 305 ~~~d~~~~erva~~l~ff 322 (344)
T KOG2170|consen 305 LAPDQDFVERVANSLSFF 322 (344)
T ss_pred cccchHHHHHHHHhhccc
Confidence 889999999999998744
No 400
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=92.33 E-value=0.66 Score=47.12 Aligned_cols=24 Identities=29% Similarity=0.408 Sum_probs=17.4
Q ss_pred CEEEECCCCCchHHHhHHHHHHHhh
Q 017196 71 DLCINSPTGSGKTLSYALPIVQTLS 95 (375)
Q Consensus 71 ~~ii~a~TGsGKTl~~~l~il~~l~ 95 (375)
-.++.+|.|+|||.++-. +...+.
T Consensus 40 ayLf~Gp~G~GKTt~Ar~-lAk~L~ 63 (563)
T PRK06647 40 AYIFSGPRGVGKTSSARA-FARCLN 63 (563)
T ss_pred EEEEECCCCCCHHHHHHH-HHHhhc
Confidence 478999999999987544 444443
No 401
>PF02534 T4SS-DNA_transf: Type IV secretory system Conjugative DNA transfer; InterPro: IPR003688 This entry represents TraG proteins and their homologues. These proteins contain a P-loop and walker-B site for nucleotide binding. TraG is essential for DNA transfer in bacterial conjugation. These proteins are thought to mediate interactions between the DNA-processing (Dtr) and the mating pair formation (Mpf) systems [, ].; GO: 0009291 unidirectional conjugation, 0016020 membrane
Probab=92.29 E-value=0.17 Score=50.24 Aligned_cols=50 Identities=24% Similarity=0.311 Sum_probs=39.2
Q ss_pred CCEEEECCCCCchHHHhHHHHHHHhhhcccCCceEEEEcccHHHHHHHHHHHHHhc
Q 017196 70 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIA 125 (375)
Q Consensus 70 ~~~ii~a~TGsGKTl~~~l~il~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~ 125 (375)
.++++.||||||||.++++|.+.. .. + -+||.=|-.+|...+....++.+
T Consensus 45 ~h~lvig~tgSGKt~~~viP~ll~--~~---~-s~iV~D~KgEl~~~t~~~r~~~G 94 (469)
T PF02534_consen 45 THVLVIGPTGSGKTTSFVIPNLLN--YP---G-SMIVTDPKGELYEKTAGYRKKRG 94 (469)
T ss_pred eEEEEEeCCCCCccceeeHhHHHh--cc---C-CEEEEECCCcHHHHHHHHHHHCC
Confidence 469999999999999999887642 21 1 48888899999887777776653
No 402
>PF06733 DEAD_2: DEAD_2; InterPro: IPR010614 This represents a conserved region within a number of RAD3-like DNA-binding helicases that are seemingly ubiquitous - members include proteins of eukaryotic, bacterial and archaeal origin. RAD3 is involved in nucleotide excision repair, and forms part of the transcription factor TFIIH in yeast [].; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 3CRV_A 3CRW_1 2VL7_A 4A15_A 2VSF_A.
Probab=92.27 E-value=0.084 Score=44.90 Aligned_cols=45 Identities=22% Similarity=0.195 Sum_probs=28.0
Q ss_pred hhcCCCcEEEeCcHHHHHHHhhcCCC-CCCCccEEEEecchhhhhH
Q 017196 168 ELQSAVDILVATPGRLMDHINATRGF-TLEHLCYLVVDETDRLLRE 212 (375)
Q Consensus 168 ~~~~~~~IiV~Tp~~l~~~l~~~~~~-~~~~~~~vIiDE~h~l~~~ 212 (375)
.....++|||+++.-|++-....... ....-.+|||||||.+.+.
T Consensus 115 ~~~~~adivi~~y~yl~~~~~~~~~~~~~~~~~ivI~DEAHNL~~~ 160 (174)
T PF06733_consen 115 ELAKNADIVICNYNYLFDPSIRKSLFGIDLKDNIVIFDEAHNLEDA 160 (174)
T ss_dssp HCGGG-SEEEEETHHHHSHHHHHHHCT--CCCEEEEETTGGGCGGG
T ss_pred HhcccCCEEEeCHHHHhhHHHHhhhccccccCcEEEEecccchHHH
Confidence 34456799999998777543321111 1223469999999998654
No 403
>PRK08840 replicative DNA helicase; Provisional
Probab=92.26 E-value=1.2 Score=44.05 Aligned_cols=59 Identities=12% Similarity=-0.028 Sum_probs=33.9
Q ss_pred HHhhCCCCCCCCEEEECCCCCchHHHhHHHHHHHhhhcccCCceEEEEcccHHHHHHHHHHHH
Q 017196 60 QETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFA 122 (375)
Q Consensus 60 ~~~~~~~~~~~~~ii~a~TGsGKTl~~~l~il~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~~~ 122 (375)
+.++..+..|.-++|.|.+|.|||.- ++-+...+... .+..++|...= --.+|+..++-
T Consensus 208 D~~~~G~~~g~LiviaarPg~GKTaf-alnia~~~a~~--~~~~v~~fSlE-Ms~~ql~~Rll 266 (464)
T PRK08840 208 NKKTAGLQGSDLIIVAARPSMGKTTF-AMNLCENAAMD--QDKPVLIFSLE-MPAEQLMMRML 266 (464)
T ss_pred HHhhcCCCCCceEEEEeCCCCchHHH-HHHHHHHHHHh--CCCeEEEEecc-CCHHHHHHHHH
Confidence 44566677777788899999999964 44444443221 12246665422 22345555544
No 404
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=92.14 E-value=2.1 Score=45.13 Aligned_cols=37 Identities=16% Similarity=0.010 Sum_probs=24.1
Q ss_pred CccHhhHHHHHHhhCCCC--CCCCEEEECCCCCchHHHh
Q 017196 50 SLFPVQVAVWQETIGPGL--FERDLCINSPTGSGKTLSY 86 (375)
Q Consensus 50 ~~~~~Q~~~~~~~~~~~~--~~~~~ii~a~TGsGKTl~~ 86 (375)
.|--.|..-+..++..+. ...|+++.+|+|+|||..+
T Consensus 182 ~~~igr~~ei~~~~~~L~~~~~~n~lL~G~pG~GKT~l~ 220 (731)
T TIGR02639 182 DPLIGREDELERTIQVLCRRKKNNPLLVGEPGVGKTAIA 220 (731)
T ss_pred CcccCcHHHHHHHHHHHhcCCCCceEEECCCCCCHHHHH
Confidence 344456555555553222 2358999999999999864
No 405
>PF14516 AAA_35: AAA-like domain
Probab=92.14 E-value=1.4 Score=41.70 Aligned_cols=41 Identities=24% Similarity=0.377 Sum_probs=30.9
Q ss_pred HhhHHHHHHhhCCCCCCCCEEEECCCCCchHHHhHHHHHHHhhhc
Q 017196 53 PVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNR 97 (375)
Q Consensus 53 ~~Q~~~~~~~~~~~~~~~~~ii~a~TGsGKTl~~~l~il~~l~~~ 97 (375)
|..+++++.+.. .|..+.|.||-.+|||.. +.-+.+.+...
T Consensus 18 ~~e~~~~~~i~~---~G~~~~I~apRq~GKTSl-l~~l~~~l~~~ 58 (331)
T PF14516_consen 18 PAEQECYQEIVQ---PGSYIRIKAPRQMGKTSL-LLRLLERLQQQ 58 (331)
T ss_pred HHHHHHHHHHhc---CCCEEEEECcccCCHHHH-HHHHHHHHHHC
Confidence 477787777663 488999999999999964 55566666554
No 406
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.13 E-value=0.93 Score=43.47 Aligned_cols=17 Identities=35% Similarity=0.495 Sum_probs=14.5
Q ss_pred CCEEEECCCCCchHHHh
Q 017196 70 RDLCINSPTGSGKTLSY 86 (375)
Q Consensus 70 ~~~ii~a~TGsGKTl~~ 86 (375)
+.+++.||.|+|||..+
T Consensus 40 ~~~L~~G~~G~GKt~~a 56 (367)
T PRK14970 40 QALLFCGPRGVGKTTCA 56 (367)
T ss_pred eEEEEECCCCCCHHHHH
Confidence 46889999999999754
No 407
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=92.12 E-value=1.1 Score=47.41 Aligned_cols=19 Identities=37% Similarity=0.441 Sum_probs=15.8
Q ss_pred CCCCEEEECCCCCchHHHh
Q 017196 68 FERDLCINSPTGSGKTLSY 86 (375)
Q Consensus 68 ~~~~~ii~a~TGsGKTl~~ 86 (375)
.+..+++.+|+|+|||..+
T Consensus 346 ~~~~lll~GppG~GKT~lA 364 (775)
T TIGR00763 346 KGPILCLVGPPGVGKTSLG 364 (775)
T ss_pred CCceEEEECCCCCCHHHHH
Confidence 4557999999999999754
No 408
>CHL00095 clpC Clp protease ATP binding subunit
Probab=92.11 E-value=0.24 Score=52.85 Aligned_cols=35 Identities=20% Similarity=0.033 Sum_probs=23.4
Q ss_pred cHhhHHHHHHhhCCCCC--------C---CCEEEECCCCCchHHHh
Q 017196 52 FPVQVAVWQETIGPGLF--------E---RDLCINSPTGSGKTLSY 86 (375)
Q Consensus 52 ~~~Q~~~~~~~~~~~~~--------~---~~~ii~a~TGsGKTl~~ 86 (375)
-..|..|+..+...+.. + ..+++.+|||+|||..+
T Consensus 511 v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA 556 (821)
T CHL00095 511 IIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELT 556 (821)
T ss_pred CcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHH
Confidence 44688877766433321 1 13689999999999864
No 409
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=92.08 E-value=1.3 Score=38.92 Aligned_cols=25 Identities=28% Similarity=0.460 Sum_probs=17.9
Q ss_pred CCCEEEECCCCCchHHHhHHHHHHHh
Q 017196 69 ERDLCINSPTGSGKTLSYALPIVQTL 94 (375)
Q Consensus 69 ~~~~ii~a~TGsGKTl~~~l~il~~l 94 (375)
++.++|.||-|+|||.. +--++..+
T Consensus 20 ~~~~~l~G~rg~GKTsL-l~~~~~~~ 44 (234)
T PF01637_consen 20 SQHILLYGPRGSGKTSL-LKEFINEL 44 (234)
T ss_dssp SSEEEEEESTTSSHHHH-HHHHHHHC
T ss_pred CcEEEEEcCCcCCHHHH-HHHHHHHh
Confidence 46789999999999973 33444444
No 410
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=92.08 E-value=0.93 Score=45.00 Aligned_cols=75 Identities=16% Similarity=0.174 Sum_probs=55.7
Q ss_pred CCceEEEEcccHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhh-cCCCcEEEe
Q 017196 100 RCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQEL-QSAVDILVA 178 (375)
Q Consensus 100 ~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~IiV~ 178 (375)
+..++||.|.|+.-|+++.+.++.. +.++..+||+.+..+.. ..++.. .+.+.|+|+
T Consensus 340 ~~~KvIIFc~tkr~~~~l~~~l~~~----~~~a~~iHGd~sQ~eR~------------------~~L~~FreG~~~vLVA 397 (519)
T KOG0331|consen 340 SEGKVIIFCETKRTCDELARNLRRK----GWPAVAIHGDKSQSERD------------------WVLKGFREGKSPVLVA 397 (519)
T ss_pred CCCcEEEEecchhhHHHHHHHHHhc----CcceeeecccccHHHHH------------------HHHHhcccCCcceEEE
Confidence 4558999999999999999988864 46889999997755442 222334 345999999
Q ss_pred CcHHHHHHHhhcCCCCCCCccEEEE
Q 017196 179 TPGRLMDHINATRGFTLEHLCYLVV 203 (375)
Q Consensus 179 Tp~~l~~~l~~~~~~~~~~~~~vIi 203 (375)
|.-- .+.+++.++++||-
T Consensus 398 TdVA-------aRGLDi~dV~lVIn 415 (519)
T KOG0331|consen 398 TDVA-------ARGLDVPDVDLVIN 415 (519)
T ss_pred cccc-------cccCCCccccEEEe
Confidence 9421 15689999998874
No 411
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=92.04 E-value=0.2 Score=49.30 Aligned_cols=79 Identities=18% Similarity=0.172 Sum_probs=0.0
Q ss_pred CCEEEECCCCCchHHHh--HHHHHHHhhhcccCCceEE--EEcccHHHHHHHHHHHHHhccccCceEEEeecCCchHHHH
Q 017196 70 RDLCINSPTGSGKTLSY--ALPIVQTLSNRAVRCLRAL--VVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEI 145 (375)
Q Consensus 70 ~~~ii~a~TGsGKTl~~--~l~il~~l~~~~~~~~~~l--il~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 145 (375)
+.+++-+|.|||||+.+ +--+++.-.-.-.++|.+| |+-.+.+-+..++...++-+.
T Consensus 257 KGiLLyGPPGTGKTLiARqIGkMLNArePKIVNGPeIL~KYVGeSE~NvR~LFaDAEeE~r------------------- 317 (744)
T KOG0741|consen 257 KGILLYGPPGTGKTLIARQIGKMLNAREPKIVNGPEILNKYVGESEENVRKLFADAEEEQR------------------- 317 (744)
T ss_pred eeEEEECCCCCChhHHHHHHHHHhcCCCCcccCcHHHHHHhhcccHHHHHHHHHhHHHHHH-------------------
Q ss_pred HHHhhcCccccCccCCchhHHHhhcCCCcEEEeCcHHHHHHHhhcCCCCCCCccEEEEecchhhhhH
Q 017196 146 SELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLRE 212 (375)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiV~Tp~~l~~~l~~~~~~~~~~~~~vIiDE~h~l~~~ 212 (375)
..-.-+.+++||+||+|.++..
T Consensus 318 ---------------------------------------------~~g~~SgLHIIIFDEiDAICKq 339 (744)
T KOG0741|consen 318 ---------------------------------------------RLGANSGLHIIIFDEIDAICKQ 339 (744)
T ss_pred ---------------------------------------------hhCccCCceEEEehhhHHHHHh
No 412
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=92.01 E-value=2.3 Score=37.53 Aligned_cols=46 Identities=24% Similarity=0.141 Sum_probs=28.1
Q ss_pred HHHhh-CCCCCCCCEEEECCCCCchHHHhHHHHHHHhhhcccCCceEEEEc
Q 017196 59 WQETI-GPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVL 108 (375)
Q Consensus 59 ~~~~~-~~~~~~~~~ii~a~TGsGKTl~~~l~il~~l~~~~~~~~~~lil~ 108 (375)
++.++ ..+..|.-+.+.+++|+|||..++-.+.+.+.. +.+++|+.
T Consensus 12 lD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~la~~~~~~----~~~v~yi~ 58 (225)
T PRK09361 12 LDELLGGGFERGTITQIYGPPGSGKTNICLQLAVEAAKN----GKKVIYID 58 (225)
T ss_pred HHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHHHC----CCeEEEEE
Confidence 34444 344467778999999999997654444433332 22466664
No 413
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=91.98 E-value=0.45 Score=50.86 Aligned_cols=47 Identities=23% Similarity=0.243 Sum_probs=27.6
Q ss_pred CCHHHHHHHHhCCCCC-ccHhhHHHHHHhhCCCCCCCCEEEECCCCCchHHHh
Q 017196 35 LDPRLKVALQNMGISS-LFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSY 86 (375)
Q Consensus 35 l~~~i~~~l~~~g~~~-~~~~Q~~~~~~~~~~~~~~~~~ii~a~TGsGKTl~~ 86 (375)
.-..+.+.|+++-... ++|-+.+-+ ++..-+.+++++|.|||||+.+
T Consensus 269 gl~~~i~~LKEmVl~PLlyPE~f~~~-----~itpPrgvL~~GppGTGkTl~a 316 (1080)
T KOG0732|consen 269 GLENYINQLKEMVLLPLLYPEFFDNF-----NITPPRGVLFHGPPGTGKTLMA 316 (1080)
T ss_pred cHHHHHHHHHHHHHhHhhhhhHhhhc-----ccCCCcceeecCCCCCchhHHH
Confidence 4455666666653322 233332211 2224567999999999999853
No 414
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=91.95 E-value=0.17 Score=47.31 Aligned_cols=19 Identities=21% Similarity=0.537 Sum_probs=16.7
Q ss_pred CCCCCEEEECCCCCchHHH
Q 017196 67 LFERDLCINSPTGSGKTLS 85 (375)
Q Consensus 67 ~~~~~~ii~a~TGsGKTl~ 85 (375)
..++++++.+++|+|||..
T Consensus 62 ~~~~~ilL~G~pGtGKTtl 80 (327)
T TIGR01650 62 AYDRRVMVQGYHGTGKSTH 80 (327)
T ss_pred hcCCcEEEEeCCCChHHHH
Confidence 3578999999999999975
No 415
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=91.94 E-value=1.8 Score=40.59 Aligned_cols=19 Identities=21% Similarity=0.223 Sum_probs=15.2
Q ss_pred CCCEEEECCCCCchHHHhH
Q 017196 69 ERDLCINSPTGSGKTLSYA 87 (375)
Q Consensus 69 ~~~~ii~a~TGsGKTl~~~ 87 (375)
+.-+++.+|+|+|||....
T Consensus 114 ~~vi~lvGpnGsGKTTt~~ 132 (318)
T PRK10416 114 PFVILVVGVNGVGKTTTIG 132 (318)
T ss_pred CeEEEEECCCCCcHHHHHH
Confidence 4457888999999998643
No 416
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=91.89 E-value=0.83 Score=41.29 Aligned_cols=20 Identities=30% Similarity=0.193 Sum_probs=17.6
Q ss_pred CCCCCCCEEEECCCCCchHH
Q 017196 65 PGLFERDLCINSPTGSGKTL 84 (375)
Q Consensus 65 ~~~~~~~~ii~a~TGsGKTl 84 (375)
.+..|+.++|.++.|+|||.
T Consensus 12 ~i~~Gqr~~I~G~~G~GKTT 31 (249)
T cd01128 12 PIGKGQRGLIVAPPKAGKTT 31 (249)
T ss_pred ccCCCCEEEEECCCCCCHHH
Confidence 45588999999999999996
No 417
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=91.88 E-value=0.11 Score=47.98 Aligned_cols=17 Identities=47% Similarity=0.679 Sum_probs=15.1
Q ss_pred CCEEEECCCCCchHHHh
Q 017196 70 RDLCINSPTGSGKTLSY 86 (375)
Q Consensus 70 ~~~ii~a~TGsGKTl~~ 86 (375)
.|+++.+|||||||+.+
T Consensus 98 SNILLiGPTGsGKTlLA 114 (408)
T COG1219 98 SNILLIGPTGSGKTLLA 114 (408)
T ss_pred ccEEEECCCCCcHHHHH
Confidence 58999999999999854
No 418
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.86 E-value=0.46 Score=48.58 Aligned_cols=148 Identities=16% Similarity=0.176 Sum_probs=75.2
Q ss_pred CCCCCCEEEECCCCCchHHHhHHHHHHHhhhcccCCceEEEEcccHHHHHHHHHHHHHhccccCceEE---------Eee
Q 017196 66 GLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVG---------LAV 136 (375)
Q Consensus 66 ~~~~~~~ii~a~TGsGKTl~~~l~il~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~v~---------~~~ 136 (375)
+..|+.+.+.+|.|+|||.+ ..++++++.-. .+ + |+.--..+-+=-...+++.-...+-... ..+
T Consensus 491 i~pGe~vALVGPSGsGKSTi--asLL~rfY~Pt-sG-~--IllDG~~i~~~~~~~lr~~Ig~V~QEPvLFs~sI~eNI~Y 564 (716)
T KOG0058|consen 491 IRPGEVVALVGPSGSGKSTI--ASLLLRFYDPT-SG-R--ILLDGVPISDINHKYLRRKIGLVGQEPVLFSGSIRENIAY 564 (716)
T ss_pred eCCCCEEEEECCCCCCHHHH--HHHHHHhcCCC-CC-e--EEECCeehhhcCHHHHHHHeeeeeccceeecccHHHHHhc
Confidence 44788999999999999985 55677777642 21 2 3333333322222223222221121111 222
Q ss_pred cCCchHHH-HHHHhhcCccccCccCCchhHHHhhcCCCcEEEeCcHHHHHHHhhcCC----CCCCCccEEEEecchhhhh
Q 017196 137 GQSSIADE-ISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRG----FTLEHLCYLVVDETDRLLR 211 (375)
Q Consensus 137 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiV~Tp~~l~~~l~~~~~----~~~~~~~~vIiDE~h~l~~ 211 (375)
|-.....+ .....+ --+..+.-..++.+++=.||.-+..++-=++.+. --+++..++|+|||=.-+|
T Consensus 565 G~~~~t~e~i~~AAk--------~ANah~FI~~~p~gY~T~VGEkG~qLSGGQKQRIAIARALlr~P~VLILDEATSALD 636 (716)
T KOG0058|consen 565 GLDNATDEEIEAAAK--------MANAHEFITNFPDGYNTVVGEKGSQLSGGQKQRIAIARALLRNPRVLILDEATSALD 636 (716)
T ss_pred CCCCCCHHHHHHHHH--------HhChHHHHHhCccccccccCCccccccchHHHHHHHHHHHhcCCCEEEEechhhhcc
Confidence 22211111 000000 0122333445666777777766543322111000 1267888999999998888
Q ss_pred HhHHhHHHHHHHhhhc
Q 017196 212 EAYQAWLPTVLQLTRS 227 (375)
Q Consensus 212 ~~~~~~l~~i~~~l~~ 227 (375)
..-...++..++.+..
T Consensus 637 aeSE~lVq~aL~~~~~ 652 (716)
T KOG0058|consen 637 AESEYLVQEALDRLMQ 652 (716)
T ss_pred hhhHHHHHHHHHHhhc
Confidence 7655566666655444
No 419
>PRK06321 replicative DNA helicase; Provisional
Probab=91.85 E-value=1.2 Score=44.36 Aligned_cols=66 Identities=14% Similarity=-0.019 Sum_probs=37.5
Q ss_pred ccHhhHHHHHHhhCCCCCCCCEEEECCCCCchHHHhHHHHHHHhhhcccCCceEEEEcccHHHHHHHHHHHH
Q 017196 51 LFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFA 122 (375)
Q Consensus 51 ~~~~Q~~~~~~~~~~~~~~~~~ii~a~TGsGKTl~~~l~il~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~~~ 122 (375)
|+.+ ..++.+...+..|.-++|.|.+|+|||. +++-+...+... .+..+++.+. ..-..|+..++.
T Consensus 210 ~tG~--~~LD~~t~Gl~~G~LiiiaarPgmGKTa-fal~ia~~~a~~--~g~~v~~fSL-EMs~~ql~~Rll 275 (472)
T PRK06321 210 PTHF--IDLDKMINGFSPSNLMILAARPAMGKTA-LALNIAENFCFQ--NRLPVGIFSL-EMTVDQLIHRII 275 (472)
T ss_pred ccCc--HHHHHHhcCCCCCcEEEEEeCCCCChHH-HHHHHHHHHHHh--cCCeEEEEec-cCCHHHHHHHHH
Confidence 4554 3455666667677778889999999996 455555544321 1223555542 222345555443
No 420
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=91.84 E-value=1.5 Score=40.96 Aligned_cols=47 Identities=17% Similarity=0.277 Sum_probs=30.8
Q ss_pred HHHHHHHhhcCCCCCCCccEEEEecchhhhhHhHHhHHHHHHHhhhcc
Q 017196 181 GRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSD 228 (375)
Q Consensus 181 ~~l~~~l~~~~~~~~~~~~~vIiDE~h~l~~~~~~~~l~~i~~~l~~~ 228 (375)
.+++..+.+ +...-+---++|+||+|.+.....+..+-.+.+.-..+
T Consensus 122 ~~lL~~L~~-~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~ 168 (408)
T KOG2228|consen 122 SKLLEALKK-GDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSA 168 (408)
T ss_pred HHHHHHHhc-CCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhc
Confidence 355556655 33333344589999999887777777777777766553
No 421
>PRK13897 type IV secretion system component VirD4; Provisional
Probab=91.82 E-value=0.26 Score=50.32 Aligned_cols=50 Identities=16% Similarity=0.122 Sum_probs=40.8
Q ss_pred CCCEEEECCCCCchHHHhHHHHHHHhhhcccCCceEEEEcccHHHHHHHHHHHHHh
Q 017196 69 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAI 124 (375)
Q Consensus 69 ~~~~ii~a~TGsGKTl~~~l~il~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~ 124 (375)
.+++++.||||||||..+++|-+..... -+||+=|-.|+...+....++.
T Consensus 158 ~~hvLviapTgSGKg~g~VIPnLL~~~~------S~VV~DpKGEl~~~Ta~~R~~~ 207 (606)
T PRK13897 158 FQHALLFAPTGSGKGVGFVIPNLLFWED------SVVVHDIKLENYELTSGWREKQ 207 (606)
T ss_pred CceEEEEcCCCCCcceEEehhhHHhCCC------CEEEEeCcHHHHHHHHHHHHHC
Confidence 3579999999999999999998876421 2888889999998877777664
No 422
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=91.82 E-value=0.4 Score=45.80 Aligned_cols=27 Identities=33% Similarity=0.425 Sum_probs=19.5
Q ss_pred CCCCEEEECCCCCchHHHhHHHHHHHhh
Q 017196 68 FERDLCINSPTGSGKTLSYALPIVQTLS 95 (375)
Q Consensus 68 ~~~~~ii~a~TGsGKTl~~~l~il~~l~ 95 (375)
.+..++|++|||||||... -.++..+.
T Consensus 133 ~~glilI~GpTGSGKTTtL-~aLl~~i~ 159 (358)
T TIGR02524 133 QEGIVFITGATGSGKSTLL-AAIIRELA 159 (358)
T ss_pred cCCEEEEECCCCCCHHHHH-HHHHHHHh
Confidence 4667999999999999753 33444443
No 423
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=91.80 E-value=0.43 Score=49.62 Aligned_cols=30 Identities=23% Similarity=0.257 Sum_probs=26.0
Q ss_pred ccEEEEecchhhhhHhHHhHHHHHHHhhhc
Q 017196 198 LCYLVVDETDRLLREAYQAWLPTVLQLTRS 227 (375)
Q Consensus 198 ~~~vIiDE~h~l~~~~~~~~l~~i~~~l~~ 227 (375)
.-++|+|+.|.+-+......+..++++.|.
T Consensus 130 pl~LVlDDyHli~~~~l~~~l~fLl~~~P~ 159 (894)
T COG2909 130 PLYLVLDDYHLISDPALHEALRFLLKHAPE 159 (894)
T ss_pred ceEEEeccccccCcccHHHHHHHHHHhCCC
Confidence 358999999999888888888999988877
No 424
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=91.74 E-value=0.28 Score=46.40 Aligned_cols=41 Identities=20% Similarity=0.307 Sum_probs=28.1
Q ss_pred CCCCEEEECCCCCchHHHhHHHHHHHhhhcccCCceEEEEcccHHH
Q 017196 68 FERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDL 113 (375)
Q Consensus 68 ~~~~~ii~a~TGsGKTl~~~l~il~~l~~~~~~~~~~lil~Pt~~L 113 (375)
.+++++|+++||||||.. +-.++..+.. ..+++.+=-+.||
T Consensus 159 ~~~nili~G~tgSGKTTl-l~aL~~~ip~----~~ri~tiEd~~El 199 (332)
T PRK13900 159 SKKNIIISGGTSTGKTTF-TNAALREIPA----IERLITVEDAREI 199 (332)
T ss_pred cCCcEEEECCCCCCHHHH-HHHHHhhCCC----CCeEEEecCCCcc
Confidence 678999999999999973 3444444432 2367666666665
No 425
>PRK08006 replicative DNA helicase; Provisional
Probab=91.69 E-value=1.7 Score=43.23 Aligned_cols=60 Identities=10% Similarity=0.006 Sum_probs=34.2
Q ss_pred HHHhhCCCCCCCCEEEECCCCCchHHHhHHHHHHHhhhcccCCceEEEEcccHHHHHHHHHHHH
Q 017196 59 WQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFA 122 (375)
Q Consensus 59 ~~~~~~~~~~~~~~ii~a~TGsGKTl~~~l~il~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~~~ 122 (375)
++.+...+..|.-++|.|.+|+|||. +++-+...+... .+..++|...= .-.+|+..++.
T Consensus 214 LD~~~~Gl~~G~LiiIaarPgmGKTa-falnia~~~a~~--~g~~V~~fSlE-M~~~ql~~Rll 273 (471)
T PRK08006 214 LNKKTAGLQPSDLIIVAARPSMGKTT-FAMNLCENAAML--QDKPVLIFSLE-MPGEQIMMRML 273 (471)
T ss_pred HHHhhcCCCCCcEEEEEeCCCCCHHH-HHHHHHHHHHHh--cCCeEEEEecc-CCHHHHHHHHH
Confidence 44556667677778889999999996 445444443221 12246555422 22345554444
No 426
>PRK07004 replicative DNA helicase; Provisional
Probab=91.69 E-value=0.63 Score=46.13 Aligned_cols=34 Identities=12% Similarity=-0.016 Sum_probs=23.3
Q ss_pred HHHhhCCCCCCCCEEEECCCCCchHHHhHHHHHHH
Q 017196 59 WQETIGPGLFERDLCINSPTGSGKTLSYALPIVQT 93 (375)
Q Consensus 59 ~~~~~~~~~~~~~~ii~a~TGsGKTl~~~l~il~~ 93 (375)
++.+...+..|.-++|.|.+|+|||.- ++-+...
T Consensus 203 LD~~t~G~~~g~liviaarpg~GKT~~-al~ia~~ 236 (460)
T PRK07004 203 LDRMTSGMHGGELIIVAGRPSMGKTAF-SMNIGEY 236 (460)
T ss_pred hcccccCCCCCceEEEEeCCCCCccHH-HHHHHHH
Confidence 344555666677788899999999964 4444433
No 427
>PRK10867 signal recognition particle protein; Provisional
Probab=91.67 E-value=2.2 Score=41.78 Aligned_cols=21 Identities=19% Similarity=0.145 Sum_probs=16.2
Q ss_pred CEEEECCCCCchHHHhHHHHH
Q 017196 71 DLCINSPTGSGKTLSYALPIV 91 (375)
Q Consensus 71 ~~ii~a~TGsGKTl~~~l~il 91 (375)
-+++++++|+|||.+..--+.
T Consensus 102 vI~~vG~~GsGKTTtaakLA~ 122 (433)
T PRK10867 102 VIMMVGLQGAGKTTTAGKLAK 122 (433)
T ss_pred EEEEECCCCCcHHHHHHHHHH
Confidence 478889999999987654443
No 428
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=91.59 E-value=2.8 Score=40.96 Aligned_cols=18 Identities=28% Similarity=0.283 Sum_probs=14.5
Q ss_pred CEEEECCCCCchHHHhHH
Q 017196 71 DLCINSPTGSGKTLSYAL 88 (375)
Q Consensus 71 ~~ii~a~TGsGKTl~~~l 88 (375)
-+++++++|+|||.+..-
T Consensus 102 vi~lvG~~GvGKTTtaaK 119 (429)
T TIGR01425 102 VIMFVGLQGSGKTTTCTK 119 (429)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 478999999999976543
No 429
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=91.54 E-value=0.72 Score=46.88 Aligned_cols=84 Identities=26% Similarity=0.421 Sum_probs=60.3
Q ss_pred CCceEEEEcccHH--------HHHHHHHHHHHhccccCceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcC
Q 017196 100 RCLRALVVLPTRD--------LALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQS 171 (375)
Q Consensus 100 ~~~~~lil~Pt~~--------L~~Q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (375)
++-++.||||.++ -|...+..++.+++ +.++..++|.-+..+. ++..+....
T Consensus 472 ~GrQaY~VcPLIeESE~l~l~~a~~~~~~L~~~~~--~~~vgL~HGrm~~~eK------------------d~vM~~Fk~ 531 (677)
T COG1200 472 KGRQAYVVCPLIEESEKLELQAAEELYEELKSFLP--ELKVGLVHGRMKPAEK------------------DAVMEAFKE 531 (677)
T ss_pred cCCEEEEEeccccccccchhhhHHHHHHHHHHHcc--cceeEEEecCCChHHH------------------HHHHHHHHc
Confidence 4558999999876 44556666665555 6789999998776555 233444444
Q ss_pred -CCcEEEeCcHHHHHHHhhcCCCCCCCccEEEEecchhhh
Q 017196 172 -AVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLL 210 (375)
Q Consensus 172 -~~~IiV~Tp~~l~~~l~~~~~~~~~~~~~vIiDE~h~l~ 210 (375)
..+|+|+|.- -. -++++.+..+.||..|+++.
T Consensus 532 ~e~~ILVaTTV------IE-VGVdVPnATvMVIe~AERFG 564 (677)
T COG1200 532 GEIDILVATTV------IE-VGVDVPNATVMVIENAERFG 564 (677)
T ss_pred CCCcEEEEeeE------EE-ecccCCCCeEEEEechhhhh
Confidence 5899999932 11 35788999999999999773
No 430
>CHL00176 ftsH cell division protein; Validated
Probab=91.52 E-value=1.3 Score=45.78 Aligned_cols=18 Identities=33% Similarity=0.582 Sum_probs=15.4
Q ss_pred CCCEEEECCCCCchHHHh
Q 017196 69 ERDLCINSPTGSGKTLSY 86 (375)
Q Consensus 69 ~~~~ii~a~TGsGKTl~~ 86 (375)
.+.+++.+|+|+|||..+
T Consensus 216 p~gVLL~GPpGTGKT~LA 233 (638)
T CHL00176 216 PKGVLLVGPPGTGKTLLA 233 (638)
T ss_pred CceEEEECCCCCCHHHHH
Confidence 457999999999999854
No 431
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=91.48 E-value=0.14 Score=46.75 Aligned_cols=43 Identities=23% Similarity=0.302 Sum_probs=29.4
Q ss_pred CCCCCEEEECCCCCchHHHhHHHHHHHhhhcccCCceEEEEcccHHH
Q 017196 67 LFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDL 113 (375)
Q Consensus 67 ~~~~~~ii~a~TGsGKTl~~~l~il~~l~~~~~~~~~~lil~Pt~~L 113 (375)
..+.+++|+++||||||.. +-.++..+... ..+++.+-.+.|+
T Consensus 125 ~~~~~ili~G~tGSGKTT~-l~all~~i~~~---~~~iv~iEd~~E~ 167 (270)
T PF00437_consen 125 RGRGNILISGPTGSGKTTL-LNALLEEIPPE---DERIVTIEDPPEL 167 (270)
T ss_dssp HTTEEEEEEESTTSSHHHH-HHHHHHHCHTT---TSEEEEEESSS-S
T ss_pred ccceEEEEECCCccccchH-HHHHhhhcccc---ccceEEeccccce
Confidence 3578999999999999975 34455544433 2367777777664
No 432
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=91.45 E-value=1.6 Score=42.58 Aligned_cols=51 Identities=16% Similarity=0.227 Sum_probs=28.0
Q ss_pred CCCEEEECCCCCchHHHhHHHHHHHhhhcccCCceEEEE-cccHHHHHHHHHHH
Q 017196 69 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVV-LPTRDLALQVKDVF 121 (375)
Q Consensus 69 ~~~~ii~a~TGsGKTl~~~l~il~~l~~~~~~~~~~lil-~Pt~~L~~Q~~~~~ 121 (375)
+..+.|++.+|+|||.+. --++..+.... +.+.+++| |-+...+..++..+
T Consensus 175 ~gSlYVsG~PGtgkt~~l-~rvl~~~~~~~-~~~~~v~inc~sl~~~~aiF~kI 226 (529)
T KOG2227|consen 175 SGSLYVSGQPGTGKTALL-SRVLDSLSKSS-KSPVTVYINCTSLTEASAIFKKI 226 (529)
T ss_pred CcceEeeCCCCcchHHHH-HHHHHhhhhhc-ccceeEEEeeccccchHHHHHHH
Confidence 356899999999999752 22444444432 33344444 33334444444433
No 433
>TIGR03819 heli_sec_ATPase helicase/secretion neighborhood ATPase. Members of this protein family comprise a distinct clade of putative ATPase associated with an integral membrane complex likely to act in pilus formation, secretion, or conjugal transfer. The association of most members with a nearby gene for a DEAH-box helicase suggests a role in conjugal transfer.
Probab=91.44 E-value=0.55 Score=44.55 Aligned_cols=64 Identities=20% Similarity=0.200 Sum_probs=40.4
Q ss_pred HHHHHhCCCCCccHhhHHHHHHhhCCCCCCCCEEEECCCCCchHHHhHHHHHHHhhhcccCCceEEEEcccHHH
Q 017196 40 KVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDL 113 (375)
Q Consensus 40 ~~~l~~~g~~~~~~~Q~~~~~~~~~~~~~~~~~ii~a~TGsGKTl~~~l~il~~l~~~~~~~~~~lil~Pt~~L 113 (375)
.+.+.+.|+ +.+.+...+..++. .+.+++|+++||+|||.. +-.++..+. +..+.+.+-.+.||
T Consensus 154 l~~l~~~g~--~~~~~~~~L~~~v~---~~~~ili~G~tGsGKTTl-l~al~~~i~----~~~riv~iEd~~El 217 (340)
T TIGR03819 154 LDELVASGT--FPPGVARLLRAIVA---ARLAFLISGGTGSGKTTL-LSALLALVA----PDERIVLVEDAAEL 217 (340)
T ss_pred HHHHHHcCC--CCHHHHHHHHHHHh---CCCeEEEECCCCCCHHHH-HHHHHccCC----CCCcEEEECCccee
Confidence 344555564 45566666665554 678999999999999973 222333332 22367777777776
No 434
>COG1074 RecB ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [DNA replication, recombination, and repair]
Probab=91.31 E-value=0.4 Score=52.98 Aligned_cols=57 Identities=21% Similarity=0.257 Sum_probs=47.4
Q ss_pred CCCCEEEECCCCCchHHHhHHHHHHHhhhc-ccCCceEEEEcccHHHHHHHHHHHHHh
Q 017196 68 FERDLCINSPTGSGKTLSYALPIVQTLSNR-AVRCLRALVVLPTRDLALQVKDVFAAI 124 (375)
Q Consensus 68 ~~~~~ii~a~TGsGKTl~~~l~il~~l~~~-~~~~~~~lil~Pt~~L~~Q~~~~~~~~ 124 (375)
.+++++|.|.-|||||.+...-++..+... +..-.++|+++-|++-+.++..++..-
T Consensus 15 ~~~~~lveASAGSGKT~vL~~r~lrlLl~~~~~~v~~ILvvTFT~aAa~Emk~RI~~~ 72 (1139)
T COG1074 15 PGQSVLVEASAGTGKTFVLAERVLRLLLEGGPLDVDEILVVTFTKAAAAEMKERIRDR 72 (1139)
T ss_pred CCCcEEEEEcCCCCchhHHHHHHHHHHhhcCCCChhHeeeeeccHHHHHHHHHHHHHH
Confidence 678999999999999999877788888775 345558999999999998888877643
No 435
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=91.31 E-value=0.87 Score=47.33 Aligned_cols=18 Identities=28% Similarity=0.471 Sum_probs=14.9
Q ss_pred CEEEECCCCCchHHHhHH
Q 017196 71 DLCINSPTGSGKTLSYAL 88 (375)
Q Consensus 71 ~~ii~a~TGsGKTl~~~l 88 (375)
-.++.||.|+|||.++-+
T Consensus 42 AYLF~GP~GtGKTt~Ari 59 (725)
T PRK07133 42 AYLFSGPRGTGKTSVAKI 59 (725)
T ss_pred EEEEECCCCCcHHHHHHH
Confidence 368999999999987644
No 436
>PRK05595 replicative DNA helicase; Provisional
Probab=91.26 E-value=1.4 Score=43.49 Aligned_cols=61 Identities=15% Similarity=-0.043 Sum_probs=35.0
Q ss_pred HHHHhhCCCCCCCCEEEECCCCCchHHHhHHHHHHHhhhcccCCceEEEEcccHHHHHHHHHHHH
Q 017196 58 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFA 122 (375)
Q Consensus 58 ~~~~~~~~~~~~~~~ii~a~TGsGKTl~~~l~il~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~~~ 122 (375)
.++.++..+..|.-++|.|.+|+|||.- ++-+...+... .+.+++++..= .-..|+..++.
T Consensus 190 ~ld~~~~G~~~g~liviaarpg~GKT~~-al~ia~~~a~~--~g~~vl~fSlE-ms~~~l~~R~~ 250 (444)
T PRK05595 190 ELDAKTSGFQKGDMILIAARPSMGKTTF-ALNIAEYAALR--EGKSVAIFSLE-MSKEQLAYKLL 250 (444)
T ss_pred HHHHhcCCCCCCcEEEEEecCCCChHHH-HHHHHHHHHHH--cCCcEEEEecC-CCHHHHHHHHH
Confidence 3455666676777788899999999964 44444433211 12346666532 22345555544
No 437
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=91.19 E-value=3.2 Score=40.43 Aligned_cols=23 Identities=39% Similarity=0.439 Sum_probs=17.1
Q ss_pred CCEEEECCCCCchHHHhHHHHHH
Q 017196 70 RDLCINSPTGSGKTLSYALPIVQ 92 (375)
Q Consensus 70 ~~~ii~a~TGsGKTl~~~l~il~ 92 (375)
.-+++.+|+|+|||..+.--+..
T Consensus 224 ~vi~lvGptGvGKTTtaaKLA~~ 246 (432)
T PRK12724 224 KVVFFVGPTGSGKTTSIAKLAAK 246 (432)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 34778899999999876554433
No 438
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=91.15 E-value=0.82 Score=42.94 Aligned_cols=53 Identities=19% Similarity=0.064 Sum_probs=32.5
Q ss_pred HHHHhhC--CCCCCCCEEEECCCCCchHHHhHHHHHHHhhhcccCCceEEEEcccHHHH
Q 017196 58 VWQETIG--PGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLA 114 (375)
Q Consensus 58 ~~~~~~~--~~~~~~~~ii~a~TGsGKTl~~~l~il~~l~~~~~~~~~~lil~Pt~~L~ 114 (375)
+++.++. .+..|+-+.|.+|.|+|||.-++-.+.+.... +.+++|+..-..+-
T Consensus 42 ~LD~~Lg~GGlp~G~iteI~Gp~GsGKTtLal~~~~~~~~~----g~~~vyId~E~~~~ 96 (325)
T cd00983 42 SLDIALGIGGYPKGRIIEIYGPESSGKTTLALHAIAEAQKL----GGTVAFIDAEHALD 96 (325)
T ss_pred HHHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHc----CCCEEEECccccHH
Confidence 3444443 45567778899999999997544333333322 23577887654443
No 439
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=91.10 E-value=1 Score=45.02 Aligned_cols=22 Identities=32% Similarity=0.357 Sum_probs=17.6
Q ss_pred CCCCCEEEECCCCCchHHHhHH
Q 017196 67 LFERDLCINSPTGSGKTLSYAL 88 (375)
Q Consensus 67 ~~~~~~ii~a~TGsGKTl~~~l 88 (375)
..|+.+.+.+|||+|||....-
T Consensus 348 ~~G~vIaLVGPtGvGKTTtaak 369 (559)
T PRK12727 348 ERGGVIALVGPTGAGKTTTIAK 369 (559)
T ss_pred cCCCEEEEECCCCCCHHHHHHH
Confidence 4567889999999999986533
No 440
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=91.08 E-value=1.3 Score=39.69 Aligned_cols=36 Identities=19% Similarity=0.154 Sum_probs=23.5
Q ss_pred HHHHhhCCCCCCC-CEEEECCCCCchHHHhHHHHHHHh
Q 017196 58 VWQETIGPGLFER-DLCINSPTGSGKTLSYALPIVQTL 94 (375)
Q Consensus 58 ~~~~~~~~~~~~~-~~ii~a~TGsGKTl~~~l~il~~l 94 (375)
++..+-+.+..|+ -+.++++.|||||...= .++..+
T Consensus 39 ~l~~l~~~i~d~qg~~~vtGevGsGKTv~~R-al~~s~ 75 (269)
T COG3267 39 ALLMLHAAIADGQGILAVTGEVGSGKTVLRR-ALLASL 75 (269)
T ss_pred HHHHHHHHHhcCCceEEEEecCCCchhHHHH-HHHHhc
Confidence 3334445555666 68899999999998654 333333
No 441
>PRK05636 replicative DNA helicase; Provisional
Probab=90.98 E-value=2.1 Score=42.99 Aligned_cols=29 Identities=10% Similarity=-0.010 Sum_probs=21.1
Q ss_pred HHHHhhCCCCCCCCEEEECCCCCchHHHh
Q 017196 58 VWQETIGPGLFERDLCINSPTGSGKTLSY 86 (375)
Q Consensus 58 ~~~~~~~~~~~~~~~ii~a~TGsGKTl~~ 86 (375)
.++.+...+..|.-++|.|.+|+|||.-+
T Consensus 254 ~LD~~t~Gl~~G~Liiiaarpg~GKT~~a 282 (505)
T PRK05636 254 DLDDLTNGLRGGQMIIVAARPGVGKSTLA 282 (505)
T ss_pred HHhhhcCCCCCCceEEEEeCCCCCHHHHH
Confidence 34455666666777788999999999643
No 442
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=90.92 E-value=1.2 Score=48.22 Aligned_cols=85 Identities=18% Similarity=0.267 Sum_probs=65.5
Q ss_pred cCCceEEEEcccHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcCCCcEEEe
Q 017196 99 VRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVA 178 (375)
Q Consensus 99 ~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiV~ 178 (375)
.++.++.||.|..+-..++...++.+-+ ..++...||.=.-.+.. +.+..-..+.+||+||
T Consensus 801 ~RgGQvfYv~NrV~~Ie~~~~~L~~LVP--EarI~vaHGQM~e~eLE-----------------~vM~~F~~g~~dVLv~ 861 (1139)
T COG1197 801 LRGGQVFYVHNRVESIEKKAERLRELVP--EARIAVAHGQMRERELE-----------------EVMLDFYNGEYDVLVC 861 (1139)
T ss_pred hcCCEEEEEecchhhHHHHHHHHHHhCC--ceEEEEeecCCCHHHHH-----------------HHHHHHHcCCCCEEEE
Confidence 3566899999999999999999999998 57888888875433331 1223345667999999
Q ss_pred CcHHHHHHHhhcCCCCCCCccEEEEecchhh
Q 017196 179 TPGRLMDHINATRGFTLEHLCYLVVDETDRL 209 (375)
Q Consensus 179 Tp~~l~~~l~~~~~~~~~~~~~vIiDE~h~l 209 (375)
|. .+. .+++..+...+|||-||+|
T Consensus 862 TT-----IIE--tGIDIPnANTiIIe~AD~f 885 (1139)
T COG1197 862 TT-----IIE--TGIDIPNANTIIIERADKF 885 (1139)
T ss_pred ee-----eee--cCcCCCCCceEEEeccccc
Confidence 92 222 3588999999999999988
No 443
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=90.83 E-value=1.8 Score=42.60 Aligned_cols=63 Identities=13% Similarity=-0.060 Sum_probs=36.1
Q ss_pred HHHHhhCCCCCCCCEEEECCCCCchHHHhHHHHHHHhhhcccCCceEEEEcccHHHHHHHHHHHHHh
Q 017196 58 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAI 124 (375)
Q Consensus 58 ~~~~~~~~~~~~~~~ii~a~TGsGKTl~~~l~il~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~ 124 (375)
.++.++..+..|.-++|.|++|+|||.- ++-+...+... .+..+++++.- .-..|+.+.+...
T Consensus 184 ~LD~~~~G~~~G~l~vi~g~pg~GKT~~-~l~~a~~~a~~--~g~~vl~~SlE-m~~~~i~~R~~~~ 246 (434)
T TIGR00665 184 DLDKLTSGLQPSDLIILAARPSMGKTAF-ALNIAENAAIK--EGKPVAFFSLE-MSAEQLAMRMLSS 246 (434)
T ss_pred hhHhhcCCCCCCeEEEEEeCCCCChHHH-HHHHHHHHHHh--CCCeEEEEeCc-CCHHHHHHHHHHH
Confidence 4455566677777889999999999964 44444433221 12246666532 2234555555433
No 444
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=90.76 E-value=2.1 Score=40.39 Aligned_cols=41 Identities=15% Similarity=0.063 Sum_probs=23.7
Q ss_pred hHHHHHHhhCCCCCC---CCEEEECCCCCchHHHhHHHHHHHhhh
Q 017196 55 QVAVWQETIGPGLFE---RDLCINSPTGSGKTLSYALPIVQTLSN 96 (375)
Q Consensus 55 Q~~~~~~~~~~~~~~---~~~ii~a~TGsGKTl~~~l~il~~l~~ 96 (375)
|..++..+...+..| +-.++.+|.|+|||..+. .+...+..
T Consensus 11 q~~~~~~L~~~~~~~~l~ha~Lf~G~~G~gk~~~a~-~la~~l~c 54 (329)
T PRK08058 11 QPVVVKMLQNSIAKNRLSHAYLFEGAKGTGKKATAL-WLAKSLFC 54 (329)
T ss_pred HHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHH-HHHHHHCC
Confidence 444444443333344 235999999999997643 34444443
No 445
>KOG0383 consensus Predicted helicase [General function prediction only]
Probab=90.65 E-value=0.037 Score=56.51 Aligned_cols=154 Identities=18% Similarity=0.103 Sum_probs=83.9
Q ss_pred CCccHhhHHHHHHhhCCCCCCCCEEEECCCCCchHHHhHHHHHHHhhhcccCCceEEEEcccHHHHHHHHHHHHHhcccc
Q 017196 49 SSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAV 128 (375)
Q Consensus 49 ~~~~~~Q~~~~~~~~~~~~~~~~~ii~a~TGsGKTl~~~l~il~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~ 128 (375)
..+-++|.+.++++......+.+.++..++|.|||.+. +..+..+........-.|+++|.-..+. |-+.+..+++
T Consensus 294 g~L~~~qleGln~L~~~ws~~~~~ilADEmgLgktVqs-i~fl~sl~~~~~~~~P~Lv~ap~sT~~n-we~e~~~wap-- 369 (696)
T KOG0383|consen 294 GTLHPYQLEGLNWLRISWSPGVDAILADEMGLGKTVQS-IVFLYSLPKEIHSPGPPLVVAPLSTIVN-WEREFELWAP-- 369 (696)
T ss_pred ccccccchhhhhhhhcccccCCCcccchhhcCCceeeE-EEEEeecccccCCCCCceeeccCccccC-CCCchhccCC--
Confidence 47789999999999888888999999999999999753 2222223222222234677777655443 4555555555
Q ss_pred CceEEEeecCCchHHHHHHHhhcCccccCccCCchhHH---HhhcCCCcEEEeCcHHHHHHHhhcCCCCCCCccEEEEec
Q 017196 129 GLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVL---QELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDE 205 (375)
Q Consensus 129 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~IiV~Tp~~l~~~l~~~~~~~~~~~~~vIiDE 205 (375)
...+....|......-.++..-..+ .........+. ..-.-..++.+++++....-.. .+..-.+.++|+||
T Consensus 370 ~~~vv~~~G~~k~r~iirepe~s~e--d~~~~~~~~i~~~~~~s~~k~~vl~~s~~~~~~~~~---il~~v~w~~livde 444 (696)
T KOG0383|consen 370 SFYVVPYPGTAKSRAIIREPEFSFE--DSSIKSSPKISEMKTESSAKFHVLLPSYETIEIDQS---ILFSVQWGLLIVDE 444 (696)
T ss_pred CcccccCCCCccchhhhhccccccc--ccccccCCccccccchhhcccccCCCchhhcccCHH---HHhhhhcceeEeec
Confidence 3555556665443322221111110 00000001111 1122235677777664321100 01123466999999
Q ss_pred chhhhh
Q 017196 206 TDRLLR 211 (375)
Q Consensus 206 ~h~l~~ 211 (375)
+|++-+
T Consensus 445 ~~rlkn 450 (696)
T KOG0383|consen 445 AHRLKN 450 (696)
T ss_pred hhhccc
Confidence 999944
No 446
>COG0630 VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=90.63 E-value=0.52 Score=44.16 Aligned_cols=57 Identities=23% Similarity=0.218 Sum_probs=40.2
Q ss_pred CCccHhhHHHHHHhhCCCCCCCCEEEECCCCCchHHHhHHHHHHHhhhcccCCceEEEEcccHHH
Q 017196 49 SSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDL 113 (375)
Q Consensus 49 ~~~~~~Q~~~~~~~~~~~~~~~~~ii~a~TGsGKTl~~~l~il~~l~~~~~~~~~~lil~Pt~~L 113 (375)
.++.+.|..-+..++. .+++++++++||||||.. +.+++..+-. ..+++.+--|.++
T Consensus 126 gt~~~~~~ayL~~~ie---~~~siii~G~t~sGKTt~-lnall~~Ip~----~~rivtIEdt~E~ 182 (312)
T COG0630 126 GTISPEQAAYLWLAIE---ARKSIIICGGTASGKTTL-LNALLDFIPP----EERIVTIEDTPEL 182 (312)
T ss_pred CCCCHHHHHHHHHHHH---cCCcEEEECCCCCCHHHH-HHHHHHhCCc----hhcEEEEeccccc
Confidence 4677777776555554 789999999999999963 5555554432 3367777777765
No 447
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=90.63 E-value=0.56 Score=42.82 Aligned_cols=61 Identities=20% Similarity=0.345 Sum_probs=36.3
Q ss_pred HHhCCCCCccHhhHHHHHHhhCCCCCCCCEEEECCCCCchHHHhHHHHHHHhhhcccCCceEEEEcccHH
Q 017196 43 LQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRD 112 (375)
Q Consensus 43 l~~~g~~~~~~~Q~~~~~~~~~~~~~~~~~ii~a~TGsGKTl~~~l~il~~l~~~~~~~~~~lil~Pt~~ 112 (375)
|.++|+ .+.|.+.+..++. ..+..++|.++||||||.. +-.++..+.. ...+++.+-...|
T Consensus 59 l~~lg~---~~~~~~~l~~~~~--~~~GlilisG~tGSGKTT~-l~all~~i~~---~~~~iitiEdp~E 119 (264)
T cd01129 59 LEKLGL---KPENLEIFRKLLE--KPHGIILVTGPTGSGKTTT-LYSALSELNT---PEKNIITVEDPVE 119 (264)
T ss_pred HHHcCC---CHHHHHHHHHHHh--cCCCEEEEECCCCCcHHHH-HHHHHhhhCC---CCCeEEEECCCce
Confidence 455664 5556666666653 1234589999999999975 3445555432 1224555555444
No 448
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=90.52 E-value=0.69 Score=48.73 Aligned_cols=16 Identities=38% Similarity=0.497 Sum_probs=13.9
Q ss_pred CEEEECCCCCchHHHh
Q 017196 71 DLCINSPTGSGKTLSY 86 (375)
Q Consensus 71 ~~ii~a~TGsGKTl~~ 86 (375)
.+++.+|||+|||..+
T Consensus 486 ~~lf~Gp~GvGKT~lA 501 (731)
T TIGR02639 486 SFLFTGPTGVGKTELA 501 (731)
T ss_pred eEEEECCCCccHHHHH
Confidence 4799999999999764
No 449
>KOG1806 consensus DEAD box containing helicases [Replication, recombination and repair]
Probab=90.36 E-value=0.52 Score=49.78 Aligned_cols=75 Identities=20% Similarity=0.194 Sum_probs=56.0
Q ss_pred CCCCccHhhHHHHHHhhCCCCCCCCEEEECCCCCchHHHhHHHHHHHhhhcccCCceEEEEcccHHHHHHHHHHHHHhcc
Q 017196 47 GISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAP 126 (375)
Q Consensus 47 g~~~~~~~Q~~~~~~~~~~~~~~~~~ii~a~TGsGKTl~~~l~il~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~ 126 (375)
+...+++-|.+++...+ ..+..++.+|+|+|||-.+ .-++..+... -+.++++|++.+..-.+|....+.+.-.
T Consensus 735 n~v~ft~~qveai~sg~----qpgltmvvgppgtgktd~a-vqil~~lyhn-~p~qrTlivthsnqaln~lfeKi~~~d~ 808 (1320)
T KOG1806|consen 735 NQVKFTPTQVEAILSGM----QPGLTMVVGPPGTGKTDVA-VQILSVLYHN-SPNQRTLIVTHSNQALNQLFEKIMALDV 808 (1320)
T ss_pred chhccCHHHHHHHHhcC----CCCceeeecCCCCCCcchh-hhhhhhhhhc-CCCcceEEEEecccchhHHHHHHHhccc
Confidence 44577899999864443 4568999999999999875 3455555443 3667999999999988898888877644
Q ss_pred c
Q 017196 127 A 127 (375)
Q Consensus 127 ~ 127 (375)
+
T Consensus 809 d 809 (1320)
T KOG1806|consen 809 D 809 (1320)
T ss_pred c
Confidence 3
No 450
>PRK04328 hypothetical protein; Provisional
Probab=90.33 E-value=0.83 Score=41.30 Aligned_cols=56 Identities=13% Similarity=0.050 Sum_probs=36.2
Q ss_pred CCCCCCEEEECCCCCchHHHhHHHHHHHhhhcccCCceEEEEcccHHHHHHHHHHHHHhcc
Q 017196 66 GLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAP 126 (375)
Q Consensus 66 ~~~~~~~ii~a~TGsGKTl~~~l~il~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~ 126 (375)
+..|..++|.+++|+|||.-++--+.+.+.++ -+++|++ +.+-..++.+.++.+..
T Consensus 20 ip~gs~ili~G~pGsGKT~l~~~fl~~~~~~g----e~~lyis-~ee~~~~i~~~~~~~g~ 75 (249)
T PRK04328 20 IPERNVVLLSGGPGTGKSIFSQQFLWNGLQMG----EPGVYVA-LEEHPVQVRRNMRQFGW 75 (249)
T ss_pred CcCCcEEEEEcCCCCCHHHHHHHHHHHHHhcC----CcEEEEE-eeCCHHHHHHHHHHcCC
Confidence 44678899999999999875433344444443 2466666 44455567777776654
No 451
>PRK05748 replicative DNA helicase; Provisional
Probab=90.32 E-value=2.4 Score=41.90 Aligned_cols=61 Identities=13% Similarity=0.024 Sum_probs=35.7
Q ss_pred HHHHhhCCCCCCCCEEEECCCCCchHHHhHHHHHHHhhhcccCCceEEEEcccHHHHHHHHHHHH
Q 017196 58 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFA 122 (375)
Q Consensus 58 ~~~~~~~~~~~~~~~ii~a~TGsGKTl~~~l~il~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~~~ 122 (375)
.++.++..+..|.-++|.|++|+|||. +++-++...... .+..+++++ ...-..|+..++.
T Consensus 192 ~LD~~~~G~~~G~livIaarpg~GKT~-~al~ia~~~a~~--~g~~v~~fS-lEms~~~l~~R~l 252 (448)
T PRK05748 192 DLDKMTSGLQPNDLIIVAARPSVGKTA-FALNIAQNVATK--TDKNVAIFS-LEMGAESLVMRML 252 (448)
T ss_pred HHHHhcCCCCCCceEEEEeCCCCCchH-HHHHHHHHHHHh--CCCeEEEEe-CCCCHHHHHHHHH
Confidence 345556667777778999999999996 445454443221 122455554 2233445555553
No 452
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=90.14 E-value=1.4 Score=44.99 Aligned_cols=30 Identities=20% Similarity=0.289 Sum_probs=21.2
Q ss_pred CCCccEEEEecchhhhhHhHHhHHHHHHHh
Q 017196 195 LEHLCYLVVDETDRLLREAYQAWLPTVLQL 224 (375)
Q Consensus 195 ~~~~~~vIiDE~h~l~~~~~~~~l~~i~~~ 224 (375)
+++.+++++||.-.-+|......+...+..
T Consensus 485 l~~~~illLDEpts~LD~~~~~~i~~~L~~ 514 (571)
T TIGR02203 485 LKDAPILILDEATSALDNESERLVQAALER 514 (571)
T ss_pred hcCCCEEEEeCccccCCHHHHHHHHHHHHH
Confidence 467789999999888887665555444433
No 453
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=89.99 E-value=2.4 Score=43.98 Aligned_cols=90 Identities=19% Similarity=0.398 Sum_probs=61.7
Q ss_pred HHHhhhcccCCceEEEEcccHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhh-
Q 017196 91 VQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQEL- 169 (375)
Q Consensus 91 l~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 169 (375)
+..+......+.++||.++|+.-++.+.+.+.+. ++++..++|+........ ..+.+
T Consensus 432 l~eI~~~~~~g~~vLIf~~tk~~ae~L~~~L~~~----gi~~~~lh~~~~~~eR~~------------------~l~~fr 489 (655)
T TIGR00631 432 LSEIRQRVARNERVLVTTLTKKMAEDLTDYLKEL----GIKVRYLHSEIDTLERVE------------------IIRDLR 489 (655)
T ss_pred HHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhhh----ccceeeeeCCCCHHHHHH------------------HHHHHh
Confidence 3444433335568999999999998888888765 678888888755433321 12233
Q ss_pred cCCCcEEEeCcHHHHHHHhhcCCCCCCCccEEEEecchhh
Q 017196 170 QSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRL 209 (375)
Q Consensus 170 ~~~~~IiV~Tp~~l~~~l~~~~~~~~~~~~~vIiDE~h~l 209 (375)
.+..+|+||| +.+. +++++..++++|+-+++.+
T Consensus 490 ~G~i~VLV~t-----~~L~--rGfDiP~v~lVvi~Dadif 522 (655)
T TIGR00631 490 LGEFDVLVGI-----NLLR--EGLDLPEVSLVAILDADKE 522 (655)
T ss_pred cCCceEEEEc-----Chhc--CCeeeCCCcEEEEeCcccc
Confidence 3458999998 2232 4689999999999888865
No 454
>PRK08506 replicative DNA helicase; Provisional
Probab=89.98 E-value=1.1 Score=44.57 Aligned_cols=61 Identities=13% Similarity=-0.102 Sum_probs=36.0
Q ss_pred HHHHhhCCCCCCCCEEEECCCCCchHHHhHHHHHHHhhhcccCCceEEEEcccHHHHHHHHHHHHH
Q 017196 58 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAA 123 (375)
Q Consensus 58 ~~~~~~~~~~~~~~~ii~a~TGsGKTl~~~l~il~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~ 123 (375)
.++.+...+..|.-++|.|.+|+|||.- ++-+....... +..+++++. -.-..|+..++..
T Consensus 181 ~LD~~~~G~~~G~LivIaarpg~GKT~f-al~ia~~~~~~---g~~V~~fSl-EMs~~ql~~Rlla 241 (472)
T PRK08506 181 ELNKMTKGFNKGDLIIIAARPSMGKTTL-CLNMALKALNQ---DKGVAFFSL-EMPAEQLMLRMLS 241 (472)
T ss_pred HHHhhcCCCCCCceEEEEcCCCCChHHH-HHHHHHHHHhc---CCcEEEEeC-cCCHHHHHHHHHH
Confidence 4445566676777788899999999964 44444444322 224666643 2334455555543
No 455
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=89.94 E-value=1.5 Score=46.21 Aligned_cols=19 Identities=32% Similarity=0.489 Sum_probs=16.3
Q ss_pred CCCCCEEEECCCCCchHHH
Q 017196 67 LFERDLCINSPTGSGKTLS 85 (375)
Q Consensus 67 ~~~~~~ii~a~TGsGKTl~ 85 (375)
..++.+++.+|+|+|||..
T Consensus 210 ~~~~giLL~GppGtGKT~l 228 (733)
T TIGR01243 210 EPPKGVLLYGPPGTGKTLL 228 (733)
T ss_pred CCCceEEEECCCCCChHHH
Confidence 3567899999999999974
No 456
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=89.93 E-value=2.8 Score=44.99 Aligned_cols=37 Identities=16% Similarity=-0.003 Sum_probs=23.9
Q ss_pred CccHhhHHHHHHhhCCCC--CCCCEEEECCCCCchHHHh
Q 017196 50 SLFPVQVAVWQETIGPGL--FERDLCINSPTGSGKTLSY 86 (375)
Q Consensus 50 ~~~~~Q~~~~~~~~~~~~--~~~~~ii~a~TGsGKTl~~ 86 (375)
.|--.|..-+..++..+. ...++++.+|+|+|||..+
T Consensus 173 ~~~igr~~ei~~~~~~l~r~~~~n~lL~G~pGvGKT~l~ 211 (852)
T TIGR03346 173 DPVIGRDEEIRRTIQVLSRRTKNNPVLIGEPGVGKTAIV 211 (852)
T ss_pred CcCCCcHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHH
Confidence 344445555555553222 3358999999999999764
No 457
>PRK13850 type IV secretion system protein VirD4; Provisional
Probab=89.92 E-value=0.44 Score=49.29 Aligned_cols=50 Identities=16% Similarity=0.199 Sum_probs=39.0
Q ss_pred CCCEEEECCCCCchHHHhHHHHHHHhhhcccCCceEEEEcccHHHHHHHHHHHHHh
Q 017196 69 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAI 124 (375)
Q Consensus 69 ~~~~ii~a~TGsGKTl~~~l~il~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~ 124 (375)
.+++++.||||||||.++++|-+..... -+||+=|-.|+...+....++.
T Consensus 139 ~~hvlviApTgSGKgvg~VIPnLL~~~g------S~VV~DpKGE~~~~Ta~~R~~~ 188 (670)
T PRK13850 139 QPHSLVVAPTRAGKGVGVVIPTLLTFKG------SVIALDVKGELFELTSRARKAS 188 (670)
T ss_pred CceEEEEecCCCCceeeehHhHHhcCCC------CEEEEeCCchHHHHHHHHHHhC
Confidence 3589999999999999999988765321 3888889999887766655543
No 458
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=89.83 E-value=1.2 Score=39.20 Aligned_cols=51 Identities=20% Similarity=-0.016 Sum_probs=29.1
Q ss_pred HHhh-CCCCCCCCEEEECCCCCchHHHhHHHHHHHhhhcc--cCCceEEEEccc
Q 017196 60 QETI-GPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRA--VRCLRALVVLPT 110 (375)
Q Consensus 60 ~~~~-~~~~~~~~~ii~a~TGsGKTl~~~l~il~~l~~~~--~~~~~~lil~Pt 110 (375)
+.++ ..+..|.-+.|.+++|+|||..++-.+........ .....++++..-
T Consensus 9 D~~l~GG~~~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e 62 (226)
T cd01393 9 DELLGGGIPTGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTE 62 (226)
T ss_pred HHHhCCCCcCCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecC
Confidence 3444 24456777899999999999865443333322210 011356776653
No 459
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=89.71 E-value=0.39 Score=50.71 Aligned_cols=43 Identities=16% Similarity=0.120 Sum_probs=34.8
Q ss_pred cCCCcEEEeCcHHHHHHHhhcCCCCCCCccEEEEecchhhhhHh
Q 017196 170 QSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREA 213 (375)
Q Consensus 170 ~~~~~IiV~Tp~~l~~~l~~~~~~~~~~~~~vIiDE~h~l~~~~ 213 (375)
.....|++.||..+..-+-. +.+.+..+..+||||||++....
T Consensus 5 y~~ggi~~~T~rIl~~DlL~-~ri~~~~itgiiv~~Ahr~~~~~ 47 (814)
T TIGR00596 5 YLEGGIFSITSRILVVDLLT-GIIPPELITGILVLRADRIIESS 47 (814)
T ss_pred hhcCCEEEEechhhHhHHhc-CCCCHHHccEEEEeecccccccc
Confidence 34457999999988776666 45899999999999999996543
No 460
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=89.69 E-value=0.52 Score=41.00 Aligned_cols=38 Identities=18% Similarity=0.416 Sum_probs=22.9
Q ss_pred EEEECCCCCchHHHhHHHHHHHhhhcccCCceEEEEcccHH
Q 017196 72 LCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRD 112 (375)
Q Consensus 72 ~ii~a~TGsGKTl~~~l~il~~l~~~~~~~~~~lil~Pt~~ 112 (375)
++|++|||||||... -.++..+... .+.+++.+-...+
T Consensus 4 ilI~GptGSGKTTll-~~ll~~~~~~--~~~~i~t~e~~~E 41 (198)
T cd01131 4 VLVTGPTGSGKSTTL-AAMIDYINKN--KTHHILTIEDPIE 41 (198)
T ss_pred EEEECCCCCCHHHHH-HHHHHHhhhc--CCcEEEEEcCCcc
Confidence 789999999999853 3344444322 2234555555444
No 461
>TIGR02784 addA_alphas double-strand break repair helicase AddA, alphaproteobacterial type. AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the alphaproteobacteria (as modeled here) and the Firmicutes, while the partner AddB proteins show no strong homology across the two groups of species.
Probab=89.65 E-value=1.5 Score=48.70 Aligned_cols=58 Identities=17% Similarity=0.158 Sum_probs=45.1
Q ss_pred CCCCEEEECCCCCchHHHhHHHHHHHhhhcccCCceEEEEcccHHHHHHHHHHHHHhcc
Q 017196 68 FERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAP 126 (375)
Q Consensus 68 ~~~~~ii~a~TGsGKTl~~~l~il~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~ 126 (375)
-.++++|.|+-|||||.+.+--++..+..+. ....+++|+-|+.-|.++..++.....
T Consensus 9 p~~~~~~~a~agsgkt~~l~~~~~~~~~~~~-~~~~i~~~t~t~~aa~em~~Ri~~~L~ 66 (1141)
T TIGR02784 9 PKTSAWVSANAGSGKTHVLTQRVIRLLLNGV-PPSKILCLTYTKAAAAEMQNRVFDRLG 66 (1141)
T ss_pred CCCCEEEEEECCCCHHHHHHHHHHHHHHcCC-CCCeEEEEecCHHHHHHHHHHHHHHHH
Confidence 4578999999999999987666666665542 334799999999999998888876544
No 462
>PRK09165 replicative DNA helicase; Provisional
Probab=89.62 E-value=1.9 Score=43.20 Aligned_cols=29 Identities=14% Similarity=0.012 Sum_probs=21.9
Q ss_pred HHHHhhCCCCCCCCEEEECCCCCchHHHh
Q 017196 58 VWQETIGPGLFERDLCINSPTGSGKTLSY 86 (375)
Q Consensus 58 ~~~~~~~~~~~~~~~ii~a~TGsGKTl~~ 86 (375)
.++.++..+..|.-++|.|.+|+|||.-+
T Consensus 206 ~LD~~~gG~~~g~livIaarpg~GKT~~a 234 (497)
T PRK09165 206 DLDSKLGGLHPSDLIILAGRPSMGKTALA 234 (497)
T ss_pred HHhhhcCCCCCCceEEEEeCCCCChHHHH
Confidence 34555666667777899999999999644
No 463
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=89.58 E-value=2.8 Score=44.25 Aligned_cols=18 Identities=22% Similarity=0.272 Sum_probs=15.6
Q ss_pred CCCEEEECCCCCchHHHh
Q 017196 69 ERDLCINSPTGSGKTLSY 86 (375)
Q Consensus 69 ~~~~ii~a~TGsGKTl~~ 86 (375)
..++++.+|+|+|||..+
T Consensus 207 ~~n~LLvGppGvGKT~la 224 (758)
T PRK11034 207 KNNPLLVGESGVGKTAIA 224 (758)
T ss_pred CCCeEEECCCCCCHHHHH
Confidence 468999999999999864
No 464
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=89.36 E-value=0.6 Score=44.41 Aligned_cols=43 Identities=14% Similarity=0.265 Sum_probs=27.3
Q ss_pred CCCCEEEECCCCCchHHHhHHHHHHHhhhcccCCceEEEEcccHHH
Q 017196 68 FERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDL 113 (375)
Q Consensus 68 ~~~~~ii~a~TGsGKTl~~~l~il~~l~~~~~~~~~~lil~Pt~~L 113 (375)
.+..++|++|||||||... -.++..+... .+.+++.+-...|+
T Consensus 121 ~~g~ili~G~tGSGKTT~l-~al~~~i~~~--~~~~i~tiEdp~E~ 163 (343)
T TIGR01420 121 PRGLILVTGPTGSGKSTTL-ASMIDYINKN--AAGHIITIEDPIEY 163 (343)
T ss_pred cCcEEEEECCCCCCHHHHH-HHHHHhhCcC--CCCEEEEEcCChhh
Confidence 3567999999999999753 3444444332 22356666655554
No 465
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=89.28 E-value=9.5 Score=32.20 Aligned_cols=45 Identities=9% Similarity=0.047 Sum_probs=29.1
Q ss_pred EEEECCCCCchHHHhHHHHHHHhhhcccCCceEEEEcccHHHHHHHHHHHHH
Q 017196 72 LCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAA 123 (375)
Q Consensus 72 ~ii~a~TGsGKTl~~~l~il~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~ 123 (375)
++|.+++|||||.-+.- ... . .+.+++|+.....+-..+.+.+.+
T Consensus 2 ~li~G~~~sGKS~~a~~-~~~---~---~~~~~~y~at~~~~d~em~~rI~~ 46 (169)
T cd00544 2 ILVTGGARSGKSRFAER-LAA---E---LGGPVTYIATAEAFDDEMAERIAR 46 (169)
T ss_pred EEEECCCCCCHHHHHHH-HHH---h---cCCCeEEEEccCcCCHHHHHHHHH
Confidence 57899999999974332 222 1 223688887776665666666554
No 466
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=89.27 E-value=5.5 Score=33.68 Aligned_cols=16 Identities=19% Similarity=0.119 Sum_probs=13.7
Q ss_pred CEEEECCCCCchHHHh
Q 017196 71 DLCINSPTGSGKTLSY 86 (375)
Q Consensus 71 ~~ii~a~TGsGKTl~~ 86 (375)
.++|.+++|||||.-+
T Consensus 3 ~ili~G~~~sGKS~~a 18 (170)
T PRK05800 3 LILVTGGARSGKSRFA 18 (170)
T ss_pred EEEEECCCCccHHHHH
Confidence 5789999999999754
No 467
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=89.26 E-value=2.9 Score=44.14 Aligned_cols=19 Identities=32% Similarity=0.469 Sum_probs=15.8
Q ss_pred CCCCEEEECCCCCchHHHh
Q 017196 68 FERDLCINSPTGSGKTLSY 86 (375)
Q Consensus 68 ~~~~~ii~a~TGsGKTl~~ 86 (375)
..+.+++.+|+|||||+.+
T Consensus 486 ~~~giLL~GppGtGKT~la 504 (733)
T TIGR01243 486 PPKGVLLFGPPGTGKTLLA 504 (733)
T ss_pred CCceEEEECCCCCCHHHHH
Confidence 4567999999999999853
No 468
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=89.18 E-value=0.68 Score=43.29 Aligned_cols=19 Identities=37% Similarity=0.461 Sum_probs=16.7
Q ss_pred CCCCCEEEECCCCCchHHH
Q 017196 67 LFERDLCINSPTGSGKTLS 85 (375)
Q Consensus 67 ~~~~~~ii~a~TGsGKTl~ 85 (375)
..+.++++.++||||||..
T Consensus 142 ~~~~~ili~G~tGsGKTTl 160 (308)
T TIGR02788 142 ASRKNIIISGGTGSGKTTF 160 (308)
T ss_pred hCCCEEEEECCCCCCHHHH
Confidence 3678999999999999974
No 469
>PRK04841 transcriptional regulator MalT; Provisional
Probab=89.15 E-value=3.2 Score=44.78 Aligned_cols=31 Identities=16% Similarity=0.220 Sum_probs=22.2
Q ss_pred CccEEEEecchhhhhHhHHhHHHHHHHhhhc
Q 017196 197 HLCYLVVDETDRLLREAYQAWLPTVLQLTRS 227 (375)
Q Consensus 197 ~~~~vIiDE~h~l~~~~~~~~l~~i~~~l~~ 227 (375)
..-+||||++|.+-+......+..++...+.
T Consensus 121 ~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~ 151 (903)
T PRK04841 121 QPLYLVIDDYHLITNPEIHEAMRFFLRHQPE 151 (903)
T ss_pred CCEEEEEeCcCcCCChHHHHHHHHHHHhCCC
Confidence 4458999999988656655667777766544
No 470
>PRK10436 hypothetical protein; Provisional
Probab=89.13 E-value=0.56 Score=46.39 Aligned_cols=47 Identities=32% Similarity=0.574 Sum_probs=29.5
Q ss_pred HHhCCCCCccHhhHHHHHHhhCCCCCCCCEEEECCCCCchHHHhHHHHHHHhh
Q 017196 43 LQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLS 95 (375)
Q Consensus 43 l~~~g~~~~~~~Q~~~~~~~~~~~~~~~~~ii~a~TGsGKTl~~~l~il~~l~ 95 (375)
|..+|+ .+.|.+.+..++. ..+.-++|++|||||||.+. -.++..+.
T Consensus 197 L~~LG~---~~~~~~~l~~~~~--~~~GliLvtGpTGSGKTTtL-~a~l~~~~ 243 (462)
T PRK10436 197 LETLGM---TPAQLAQFRQALQ--QPQGLILVTGPTGSGKTVTL-YSALQTLN 243 (462)
T ss_pred HHHcCc---CHHHHHHHHHHHH--hcCCeEEEECCCCCChHHHH-HHHHHhhC
Confidence 344554 4556666665553 13445899999999999863 34555553
No 471
>PRK08760 replicative DNA helicase; Provisional
Probab=89.12 E-value=1.6 Score=43.40 Aligned_cols=63 Identities=14% Similarity=-0.034 Sum_probs=36.2
Q ss_pred HHHHhhCCCCCCCCEEEECCCCCchHHHhHHHHHHHhhhcccCCceEEEEcccHHHHHHHHHHHHHh
Q 017196 58 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAI 124 (375)
Q Consensus 58 ~~~~~~~~~~~~~~~ii~a~TGsGKTl~~~l~il~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~ 124 (375)
.++.+...+..|.-++|.|.+|+|||.- ++-+....... .+..++|.+. ..-.+|+..++...
T Consensus 218 ~LD~~t~G~~~G~LivIaarPg~GKTaf-al~iA~~~a~~--~g~~V~~fSl-EMs~~ql~~Rl~a~ 280 (476)
T PRK08760 218 DFDAMTAGLQPTDLIILAARPAMGKTTF-ALNIAEYAAIK--SKKGVAVFSM-EMSASQLAMRLISS 280 (476)
T ss_pred HHHHHhcCCCCCceEEEEeCCCCChhHH-HHHHHHHHHHh--cCCceEEEec-cCCHHHHHHHHHHh
Confidence 3455566666777788899999999964 44444433221 1224655543 22234666665544
No 472
>COG0210 UvrD Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair]
Probab=89.08 E-value=1.1 Score=46.50 Aligned_cols=71 Identities=20% Similarity=0.175 Sum_probs=56.2
Q ss_pred CccHhhHHHHHHhhCCCCCCCCEEEECCCCCchHHHhHHHHHHHhhhcccCCceEEEEcccHHHHHHHHHHHHHhcc
Q 017196 50 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAP 126 (375)
Q Consensus 50 ~~~~~Q~~~~~~~~~~~~~~~~~ii~a~TGsGKTl~~~l~il~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~ 126 (375)
.+++-|.+|..+. ...++|.|.-|||||.+..--+...+.........++.++=|+.-|.++...+..+..
T Consensus 2 ~Ln~~Q~~av~~~------~gp~lV~AGaGsGKT~vlt~Ria~li~~~~v~p~~Il~vTFTnkAA~em~~Rl~~~~~ 72 (655)
T COG0210 2 KLNPEQREAVLHP------DGPLLVLAGAGSGKTRVLTERIAYLIAAGGVDPEQILAITFTNKAAAEMRERLLKLLG 72 (655)
T ss_pred CCCHHHHHHHhcC------CCCeEEEECCCCCchhhHHHHHHHHHHcCCcChHHeeeeechHHHHHHHHHHHHHHhC
Confidence 5788999986432 4568889999999999877666666666544555799999999999999999998875
No 473
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=89.05 E-value=0.65 Score=47.29 Aligned_cols=47 Identities=32% Similarity=0.487 Sum_probs=30.2
Q ss_pred HHhCCCCCccHhhHHHHHHhhCCCCCCCCEEEECCCCCchHHHhHHHHHHHhh
Q 017196 43 LQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLS 95 (375)
Q Consensus 43 l~~~g~~~~~~~Q~~~~~~~~~~~~~~~~~ii~a~TGsGKTl~~~l~il~~l~ 95 (375)
|.++|+ .+.|.+.+..++.. ....++|++|||||||.+. -.++..+.
T Consensus 295 l~~lg~---~~~~~~~l~~~~~~--~~Glilv~G~tGSGKTTtl-~a~l~~~~ 341 (564)
T TIGR02538 295 IDKLGF---EPDQKALFLEAIHK--PQGMVLVTGPTGSGKTVSL-YTALNILN 341 (564)
T ss_pred HHHcCC---CHHHHHHHHHHHHh--cCCeEEEECCCCCCHHHHH-HHHHHhhC
Confidence 455665 45666666665531 2345789999999999763 44555553
No 474
>PRK12608 transcription termination factor Rho; Provisional
Probab=89.00 E-value=3.5 Score=39.43 Aligned_cols=42 Identities=17% Similarity=0.074 Sum_probs=28.8
Q ss_pred HhhHHHHHHhhCCCCCCCCEEEECCCCCchHHHhHHHHHHHhhh
Q 017196 53 PVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSN 96 (375)
Q Consensus 53 ~~Q~~~~~~~~~~~~~~~~~ii~a~TGsGKTl~~~l~il~~l~~ 96 (375)
.+-.++++.+++ +-.|+.++|.|+.|+|||... --++..+..
T Consensus 118 ~~~~RvID~l~P-iGkGQR~LIvG~pGtGKTTLl-~~la~~i~~ 159 (380)
T PRK12608 118 DLSMRVVDLVAP-IGKGQRGLIVAPPRAGKTVLL-QQIAAAVAA 159 (380)
T ss_pred chhHhhhhheee-cCCCceEEEECCCCCCHHHHH-HHHHHHHHh
Confidence 555667776653 458899999999999999753 334444433
No 475
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=88.83 E-value=3.5 Score=38.69 Aligned_cols=94 Identities=16% Similarity=0.268 Sum_probs=64.1
Q ss_pred HHHhhhcccCCceEEEEcccHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhc
Q 017196 91 VQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQ 170 (375)
Q Consensus 91 l~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (375)
..++.+....+..++|.+|+++..+|....++.-.+. ..+..+++.+....+.. +.+.
T Consensus 295 ~~~lekq~~~~~P~liF~p~I~~~eq~a~~lk~~~~~--~~i~~Vhs~d~~R~EkV--------------------~~fR 352 (441)
T COG4098 295 KRWLEKQRKTGRPVLIFFPEIETMEQVAAALKKKLPK--ETIASVHSEDQHRKEKV--------------------EAFR 352 (441)
T ss_pred HHHHHHHHhcCCcEEEEecchHHHHHHHHHHHhhCCc--cceeeeeccCccHHHHH--------------------HHHH
Confidence 3344433334456999999999999999999665542 45666777665444432 2333
Q ss_pred C-CCcEEEeCcHHHHHHHhhcCCCCCCCccEEEEecchhhhhHh
Q 017196 171 S-AVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREA 213 (375)
Q Consensus 171 ~-~~~IiV~Tp~~l~~~l~~~~~~~~~~~~~vIiDE~h~l~~~~ 213 (375)
+ ..+|+|+|. .+. +++.+.+++++|++--|.++..+
T Consensus 353 ~G~~~lLiTTT-----ILE--RGVTfp~vdV~Vlgaeh~vfTes 389 (441)
T COG4098 353 DGKITLLITTT-----ILE--RGVTFPNVDVFVLGAEHRVFTES 389 (441)
T ss_pred cCceEEEEEee-----hhh--cccccccceEEEecCCcccccHH
Confidence 3 479999983 222 46889999999999999876654
No 476
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=88.81 E-value=3.6 Score=42.02 Aligned_cols=77 Identities=25% Similarity=0.381 Sum_probs=53.5
Q ss_pred CceEEEEcccHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhc-CCCcEEEeC
Q 017196 101 CLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQ-SAVDILVAT 179 (375)
Q Consensus 101 ~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~IiV~T 179 (375)
..++||.|+|+..++++++.+... ++.+..++|+.+...... ..+.+. +..+|+|+|
T Consensus 257 ~~k~LVF~nt~~~ae~l~~~L~~~----g~~v~~lhg~l~~~eR~~------------------il~~Fr~G~~~VLVaT 314 (572)
T PRK04537 257 GARTMVFVNTKAFVERVARTLERH----GYRVGVLSGDVPQKKRES------------------LLNRFQKGQLEILVAT 314 (572)
T ss_pred CCcEEEEeCCHHHHHHHHHHHHHc----CCCEEEEeCCCCHHHHHH------------------HHHHHHcCCCeEEEEe
Confidence 447999999999999999888754 678999999876554421 222333 357999999
Q ss_pred cHHHHHHHhhcCCCCCCCccEEEEecc
Q 017196 180 PGRLMDHINATRGFTLEHLCYLVVDET 206 (375)
Q Consensus 180 p~~l~~~l~~~~~~~~~~~~~vIiDE~ 206 (375)
. .+. +.+++..+++||.-++
T Consensus 315 d-----v~a--rGIDip~V~~VInyd~ 334 (572)
T PRK04537 315 D-----VAA--RGLHIDGVKYVYNYDL 334 (572)
T ss_pred h-----hhh--cCCCccCCCEEEEcCC
Confidence 3 222 3577777777776443
No 477
>PF01580 FtsK_SpoIIIE: FtsK/SpoIIIE family; InterPro: IPR002543 The FtsK/SpoIIIE domain is found extensively in a wide variety of proteins from prokaryotes and plasmids [] some of which contain up to three copies.The domain contains a putative ATP binding P-loop motif. A mutation in FtsK causes a temperature sensitive block in cell division and it is involved in peptidoglycan synthesis or modification []. The SpoIIIE protein is implicated in intercellular chromosomal DNA transfer []. ; GO: 0000166 nucleotide binding, 0003677 DNA binding, 0005524 ATP binding, 0007049 cell cycle, 0007059 chromosome segregation, 0051301 cell division, 0016021 integral to membrane; PDB: 2IUS_E 2IUU_A 2IUT_A.
Probab=88.68 E-value=0.78 Score=39.95 Aligned_cols=41 Identities=20% Similarity=0.237 Sum_probs=21.2
Q ss_pred CCCEEEECCCCCchHHHhHHHHHHHhhhcccCCceEEEEcc
Q 017196 69 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLP 109 (375)
Q Consensus 69 ~~~~ii~a~TGsGKTl~~~l~il~~l~~~~~~~~~~lil~P 109 (375)
..+++|.+.||+|||....-.+...+........++.++=+
T Consensus 38 ~~h~li~G~tgsGKS~~l~~ll~~l~~~~~p~~~~l~iiD~ 78 (205)
T PF01580_consen 38 NPHLLIAGATGSGKSTLLRTLLLSLALTYSPDDVQLYIIDP 78 (205)
T ss_dssp S-SEEEE--TTSSHHHHHHHHHHHHHTT--TTTEEEEEE-T
T ss_pred CceEEEEcCCCCCccHHHHHHHHHHHHHhcCCccEEEEEcC
Confidence 44899999999999986544444444432223334444433
No 478
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=88.53 E-value=4.4 Score=38.80 Aligned_cols=51 Identities=22% Similarity=0.331 Sum_probs=30.6
Q ss_pred CCCCEEEECCCCCchHHHhHHHHHHHhhhcccCCceEEEEcccHHHHHHHHHHHHHhc
Q 017196 68 FERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIA 125 (375)
Q Consensus 68 ~~~~~ii~a~TGsGKTl~~~l~il~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~ 125 (375)
..+.+.+.++.|.|||...- ..++.+... .+.| +...+...++++.+.++.
T Consensus 61 ~~~GlYl~G~vG~GKT~Lmd-~f~~~lp~~--~k~R----~HFh~Fm~~vh~~l~~~~ 111 (362)
T PF03969_consen 61 PPKGLYLWGPVGRGKTMLMD-LFYDSLPIK--RKRR----VHFHEFMLDVHSRLHQLR 111 (362)
T ss_pred CCceEEEECCCCCchhHHHH-HHHHhCCcc--cccc----ccccHHHHHHHHHHHHHh
Confidence 46789999999999998421 123333221 1111 255566777777777653
No 479
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=88.52 E-value=17 Score=32.41 Aligned_cols=55 Identities=15% Similarity=0.134 Sum_probs=30.5
Q ss_pred CEEEECCCCCchHHHhHHHHHHHhh--------hcccCCceEEEEcccHHHHHHHHHHHHHhcc
Q 017196 71 DLCINSPTGSGKTLSYALPIVQTLS--------NRAVRCLRALVVLPTRDLALQVKDVFAAIAP 126 (375)
Q Consensus 71 ~~ii~a~TGsGKTl~~~l~il~~l~--------~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~ 126 (375)
-.++.+|.|+|||..++-.++.... .......+++|+.- .+=..++.+++..+..
T Consensus 3 ~~ll~g~~G~GKS~lal~la~~va~G~~~~g~~~~~~~~~~Vlyi~~-Ed~~~~i~~Rl~~i~~ 65 (239)
T cd01125 3 VSALVAPGGTGKSSLLLVLALAMALGKNLFGGGLKVTEPGRVVYLSA-EDPREEIHRRLEAILQ 65 (239)
T ss_pred eeEEEcCCCCCHHHHHHHHHHHHhcCccccCCccccCCCceEEEEEC-CCCHHHHHHHHHHHHh
Confidence 4689999999999865444433221 11123346777772 1112345555555544
No 480
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=88.43 E-value=1.2 Score=42.66 Aligned_cols=44 Identities=20% Similarity=0.045 Sum_probs=26.4
Q ss_pred CCCCEEEECCCCCchHHHhHHHHHHHhhhcccCCceEEEEcccHHH
Q 017196 68 FERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDL 113 (375)
Q Consensus 68 ~~~~~ii~a~TGsGKTl~~~l~il~~l~~~~~~~~~~lil~Pt~~L 113 (375)
.+..++|++|||||||.. +-.++..+.... +..+++.+-...|+
T Consensus 148 ~~GlilI~G~TGSGKTT~-l~al~~~i~~~~-~~~~IvtiEdp~E~ 191 (372)
T TIGR02525 148 AAGLGLICGETGSGKSTL-AASIYQHCGETY-PDRKIVTYEDPIEY 191 (372)
T ss_pred cCCEEEEECCCCCCHHHH-HHHHHHHHHhcC-CCceEEEEecCchh
Confidence 345689999999999975 344555554321 22245555444443
No 481
>COG2842 Uncharacterized ATPase, putative transposase [General function prediction only]
Probab=88.43 E-value=1.4 Score=40.30 Aligned_cols=42 Identities=14% Similarity=0.024 Sum_probs=28.4
Q ss_pred hCCCCCCCCEEEECCCCCchHHHhHHHHHHHhhhcccCCceEEEEcccHH
Q 017196 63 IGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRD 112 (375)
Q Consensus 63 ~~~~~~~~~~ii~a~TGsGKTl~~~l~il~~l~~~~~~~~~~lil~Pt~~ 112 (375)
-++-..|+-+++.+.-|.|||-+.. +.. ...|.++++-|...
T Consensus 88 ~~A~k~g~l~~vyg~~g~gKt~a~~----~y~----~s~p~~~l~~~~p~ 129 (297)
T COG2842 88 RPASKTGSLVVVYGYAGLGKTQAAK----NYA----PSNPNALLIEADPS 129 (297)
T ss_pred hhhhhcCceEEEeccccchhHHHHH----hhc----ccCccceeecCChh
Confidence 3444567778888999999997632 222 24456888887765
No 482
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=88.31 E-value=2 Score=45.99 Aligned_cols=16 Identities=31% Similarity=0.461 Sum_probs=13.9
Q ss_pred CEEEECCCCCchHHHh
Q 017196 71 DLCINSPTGSGKTLSY 86 (375)
Q Consensus 71 ~~ii~a~TGsGKTl~~ 86 (375)
.+++.+|||+|||..+
T Consensus 598 ~~lf~Gp~GvGKT~lA 613 (852)
T TIGR03345 598 VFLLVGPSGVGKTETA 613 (852)
T ss_pred EEEEECCCCCCHHHHH
Confidence 3799999999999865
No 483
>PRK10865 protein disaggregation chaperone; Provisional
Probab=88.28 E-value=0.97 Score=48.44 Aligned_cols=17 Identities=35% Similarity=0.425 Sum_probs=14.6
Q ss_pred CEEEECCCCCchHHHhH
Q 017196 71 DLCINSPTGSGKTLSYA 87 (375)
Q Consensus 71 ~~ii~a~TGsGKTl~~~ 87 (375)
.+++.+|||+|||..+-
T Consensus 600 ~~Lf~Gp~G~GKT~lA~ 616 (857)
T PRK10865 600 SFLFLGPTGVGKTELCK 616 (857)
T ss_pred eEEEECCCCCCHHHHHH
Confidence 47999999999998753
No 484
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=88.08 E-value=0.87 Score=39.04 Aligned_cols=64 Identities=23% Similarity=0.128 Sum_probs=36.5
Q ss_pred hhCCCC-CCCCEEEECCCCCchHHHhHHHHHHHhhhc------ccCCceEEEEcccHHHHHHHHHHHHHhcc
Q 017196 62 TIGPGL-FERDLCINSPTGSGKTLSYALPIVQTLSNR------AVRCLRALVVLPTRDLALQVKDVFAAIAP 126 (375)
Q Consensus 62 ~~~~~~-~~~~~ii~a~TGsGKTl~~~l~il~~l~~~------~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~ 126 (375)
+++.+. .|.-+++.|++|+|||...+-.+....... ...+.+++++..-.. ..++.+.+..+..
T Consensus 24 li~g~~~~g~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~-~~~~~~rl~~~~~ 94 (193)
T PF13481_consen 24 LIDGLLPRGELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDS-ESQIARRLRALLQ 94 (193)
T ss_dssp EETTEE-TTSEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS--HHHHHHHHHHHHT
T ss_pred eECCcccCCeEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCC-HHHHHHHHHHHhc
Confidence 454444 566789999999999986444344333211 113346777765544 4567777776654
No 485
>PRK13764 ATPase; Provisional
Probab=88.05 E-value=1.1 Score=45.78 Aligned_cols=27 Identities=19% Similarity=0.281 Sum_probs=19.9
Q ss_pred CCCCEEEECCCCCchHHHhHHHHHHHhh
Q 017196 68 FERDLCINSPTGSGKTLSYALPIVQTLS 95 (375)
Q Consensus 68 ~~~~~ii~a~TGsGKTl~~~l~il~~l~ 95 (375)
.+++++|++|||||||.. +-.++..+.
T Consensus 256 ~~~~ILIsG~TGSGKTTl-l~AL~~~i~ 282 (602)
T PRK13764 256 RAEGILIAGAPGAGKSTF-AQALAEFYA 282 (602)
T ss_pred cCCEEEEECCCCCCHHHH-HHHHHHHHh
Confidence 467899999999999974 344555554
No 486
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=87.98 E-value=21 Score=32.53 Aligned_cols=19 Identities=32% Similarity=0.538 Sum_probs=16.7
Q ss_pred CCCCEEEECCCCCchHHHh
Q 017196 68 FERDLCINSPTGSGKTLSY 86 (375)
Q Consensus 68 ~~~~~ii~a~TGsGKTl~~ 86 (375)
..+.+++.+|.|+|||+++
T Consensus 210 ppkgvllygppgtgktl~a 228 (435)
T KOG0729|consen 210 PPKGVLLYGPPGTGKTLCA 228 (435)
T ss_pred CCCceEEeCCCCCchhHHH
Confidence 4578999999999999975
No 487
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=87.86 E-value=1.4 Score=38.86 Aligned_cols=56 Identities=14% Similarity=0.012 Sum_probs=35.4
Q ss_pred CCCCCCCEEEECCCCCchHHHhHHHHHHHhhhcccCCceEEEEcccHHHHHHHHHHHHHhc
Q 017196 65 PGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIA 125 (375)
Q Consensus 65 ~~~~~~~~ii~a~TGsGKTl~~~l~il~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~ 125 (375)
.+..|.-+++.+++|+|||.-++--+...+.++ -+++|+.-. +-.+++.+.+..+.
T Consensus 12 Gi~~g~~~li~G~~G~GKt~~~~~~~~~~~~~g----~~~~y~s~e-~~~~~l~~~~~~~~ 67 (224)
T TIGR03880 12 GFPEGHVIVVIGEYGTGKTTFSLQFLYQGLKNG----EKAMYISLE-EREERILGYAKSKG 67 (224)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCC----CeEEEEECC-CCHHHHHHHHHHcC
Confidence 444677889999999999875433344434332 246676543 44667777776654
No 488
>PF10412 TrwB_AAD_bind: Type IV secretion-system coupling protein DNA-binding domain; InterPro: IPR019476 The plasmid conjugative coupling protein TraD (also known as TrwB) is a basic integral inner-membrane nucleoside-triphosphate-binding protein. It is the structural prototype for the type IV secretion system coupling proteins, a family of proteins essential for macromolecular transport between cells []. This protein forms hexamers from six structurally very similar protomers []. This hexamer contains a central channel running from the cytosolic pole (formed by the all-alpha domains) to the membrane pole ending at the transmembrane pore shaped by 12 transmembrane helices, rendering an overall mushroom-like structure. The TrwB all-alpha domain appears to be the DNA-binding domain of the structure. ; PDB: 1E9S_D 1E9R_F 1GKI_B 1GL7_G 1GL6_A.
Probab=87.81 E-value=0.59 Score=45.23 Aligned_cols=48 Identities=25% Similarity=0.306 Sum_probs=32.5
Q ss_pred CCCCEEEECCCCCchHHHhHHHHHHHhhhcccCCceEEEEcccHHHHHHHHH
Q 017196 68 FERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKD 119 (375)
Q Consensus 68 ~~~~~ii~a~TGsGKTl~~~l~il~~l~~~~~~~~~~lil~Pt~~L~~Q~~~ 119 (375)
..++++|.+.||||||. ++-.++..+... +.++||.=|..+.....++
T Consensus 14 e~~~~li~G~~GsGKT~-~i~~ll~~~~~~---g~~~iI~D~kg~~~~~f~~ 61 (386)
T PF10412_consen 14 ENRHILIIGATGSGKTQ-AIRHLLDQIRAR---GDRAIIYDPKGEFTERFYR 61 (386)
T ss_dssp GGG-EEEEE-TTSSHHH-HHHHHHHHHHHT---T-EEEEEEETTHHHHHH--
T ss_pred hhCcEEEECCCCCCHHH-HHHHHHHHHHHc---CCEEEEEECCchHHHHhcC
Confidence 45789999999999996 456677776554 2368888888877665554
No 489
>PRK10865 protein disaggregation chaperone; Provisional
Probab=87.78 E-value=2.6 Score=45.29 Aligned_cols=36 Identities=17% Similarity=-0.009 Sum_probs=22.7
Q ss_pred ccHhhHHHHHHhhCCC--CCCCCEEEECCCCCchHHHh
Q 017196 51 LFPVQVAVWQETIGPG--LFERDLCINSPTGSGKTLSY 86 (375)
Q Consensus 51 ~~~~Q~~~~~~~~~~~--~~~~~~ii~a~TGsGKTl~~ 86 (375)
|---|..-+..++..+ ....++++.+|.|+|||..+
T Consensus 179 ~vigr~~ei~~~i~iL~r~~~~n~lL~G~pGvGKT~l~ 216 (857)
T PRK10865 179 PVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIV 216 (857)
T ss_pred cCCCCHHHHHHHHHHHhcCCcCceEEECCCCCCHHHHH
Confidence 3333555455555321 13358999999999999864
No 490
>PHA02535 P terminase ATPase subunit; Provisional
Probab=87.74 E-value=3.1 Score=42.01 Aligned_cols=86 Identities=19% Similarity=0.132 Sum_probs=56.5
Q ss_pred CCHHHHHHHHhCCCCCccHhhHHHHHHhhCCCCCCCCEEEECCCCCchHHHhHHHHHHHhhhcccCCceEEEEcccHHHH
Q 017196 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLA 114 (375)
Q Consensus 35 l~~~i~~~l~~~g~~~~~~~Q~~~~~~~~~~~~~~~~~ii~a~TGsGKTl~~~l~il~~l~~~~~~~~~~lil~Pt~~L~ 114 (375)
+.+.-.+.|...-...+.+||.+= +..-...+.-++.-.-=.|||..++.-++...... +...++|.|+++.+
T Consensus 123 ~s~~~~~~l~~~~~~~l~~YQ~~W----~~~~~~~r~r~ilKSRQiG~T~~fA~EA~~dal~~---G~nqiflSas~~QA 195 (581)
T PHA02535 123 ISDEQTEKLIEAFLDSLFDYQKHW----YRAGLHHRTRNILKSRQIGATYYFAREALEDALLT---GRNQIFLSASKAQA 195 (581)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHH----HhCccccceeeEeeecccchHHHHHHHHHHHHHhc---CCceEEECCCHHHH
Confidence 566666666655556899999883 32211123334444445899998876666655543 22589999999999
Q ss_pred HHHHHHHHHhccc
Q 017196 115 LQVKDVFAAIAPA 127 (375)
Q Consensus 115 ~Q~~~~~~~~~~~ 127 (375)
.+....+..++..
T Consensus 196 ~~f~~yi~~~a~~ 208 (581)
T PHA02535 196 HVFKQYIIAFARE 208 (581)
T ss_pred HHHHHHHHHHHHh
Confidence 9877777777553
No 491
>PHA02542 41 41 helicase; Provisional
Probab=87.48 E-value=4.4 Score=40.33 Aligned_cols=48 Identities=10% Similarity=0.106 Sum_probs=28.5
Q ss_pred HHHHHhh-CCCCCCCCEEEECCCCCchHHHhHHHHHHHhhhcccCCceEEEEc
Q 017196 57 AVWQETI-GPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVL 108 (375)
Q Consensus 57 ~~~~~~~-~~~~~~~~~ii~a~TGsGKTl~~~l~il~~l~~~~~~~~~~lil~ 108 (375)
..++.+. ..+..|.-++|.|.+|+|||..+ +-+....... +..++++.
T Consensus 177 ~~LD~~t~gGl~~G~LiiIaarPgmGKTtfa-lniA~~~a~~---g~~Vl~fS 225 (473)
T PHA02542 177 EILNKITKGGAERKTLNVLLAGVNVGKSLGL-CSLAADYLQQ---GYNVLYIS 225 (473)
T ss_pred HHHHHhccCCCCCCcEEEEEcCCCccHHHHH-HHHHHHHHhc---CCcEEEEe
Confidence 3455556 45555666788899999999754 4343333222 22466654
No 492
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=87.47 E-value=0.94 Score=45.18 Aligned_cols=46 Identities=26% Similarity=0.463 Sum_probs=29.7
Q ss_pred HHhCCCCCccHhhHHHHHHhhCCCCCCC-CEEEECCCCCchHHHhHHHHHHHhh
Q 017196 43 LQNMGISSLFPVQVAVWQETIGPGLFER-DLCINSPTGSGKTLSYALPIVQTLS 95 (375)
Q Consensus 43 l~~~g~~~~~~~Q~~~~~~~~~~~~~~~-~~ii~a~TGsGKTl~~~l~il~~l~ 95 (375)
|.++|+ .+-|.+.+..++. ..+ -++|++|||||||... -.++..+.
T Consensus 221 l~~Lg~---~~~~~~~l~~~~~---~~~GlilitGptGSGKTTtL-~a~L~~l~ 267 (486)
T TIGR02533 221 LETLGM---SPELLSRFERLIR---RPHGIILVTGPTGSGKTTTL-YAALSRLN 267 (486)
T ss_pred HHHcCC---CHHHHHHHHHHHh---cCCCEEEEEcCCCCCHHHHH-HHHHhccC
Confidence 455564 5667777666663 233 4789999999999853 33455553
No 493
>cd01127 TrwB Bacterial conjugation protein TrwB, ATP binding domain. TrwB is a homohexamer encoded by conjugative plasmids in Gram-negative bacteria. TrwB also has an all alpha domain which has been hypothesized to be responsible for DNA binding. TrwB is a component of Type IV secretion and is responsible for the horizontal transfer of DNA between bacteria.
Probab=87.41 E-value=0.72 Score=45.02 Aligned_cols=49 Identities=22% Similarity=0.268 Sum_probs=34.0
Q ss_pred CCCCCCCEEEECCCCCchHHHhHHHHHHHhhhcccCCceEEEEcccHHHHHHH
Q 017196 65 PGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQV 117 (375)
Q Consensus 65 ~~~~~~~~ii~a~TGsGKTl~~~l~il~~l~~~~~~~~~~lil~Pt~~L~~Q~ 117 (375)
.....++++|.++||+|||.. +..++..+... +.+++|+=|..++....
T Consensus 38 ~~~~~~h~~i~g~tGsGKt~~-i~~l~~~~~~~---~~~~vi~D~kg~~~~~~ 86 (410)
T cd01127 38 KDAEEAHTMIIGTTGTGKTTQ-IRELLASIRAR---GDRAIIYDPNGGFVSKF 86 (410)
T ss_pred cchhhccEEEEcCCCCCHHHH-HHHHHHHHHhc---CCCEEEEeCCcchhHhh
Confidence 333557899999999999975 44455555443 23688888888866543
No 494
>COG3972 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=87.33 E-value=4.9 Score=39.59 Aligned_cols=71 Identities=20% Similarity=0.099 Sum_probs=46.0
Q ss_pred CCCccHhhHHHHHHhhCCCCCCCCEEEECCCCCchHHHhHHHHHHHhhhcccCCceEEEEcccHHHHHHHHHHHHHhc
Q 017196 48 ISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIA 125 (375)
Q Consensus 48 ~~~~~~~Q~~~~~~~~~~~~~~~~~ii~a~TGsGKTl~~~l~il~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~ 125 (375)
+-.+-..|..|. +.. -.|.. .|.+=-|||||...+.-+. ......+..++++.+-|+.|+.++.+.+.+++
T Consensus 160 IanfD~~Q~kaa---~~~-~~G~q-rIrGLAGSGKT~~La~Kaa--~lh~knPd~~I~~Tfftk~L~s~~r~lv~~F~ 230 (660)
T COG3972 160 IANFDTDQTKAA---FQS-GFGKQ-RIRGLAGSGKTELLAHKAA--ELHSKNPDSRIAFTFFTKILASTMRTLVPEFF 230 (660)
T ss_pred Hhcccchhheee---eec-CCchh-hhhcccCCCchhHHHHHHH--HHhcCCCCceEEEEeehHHHHHHHHHHHHHHH
Confidence 334555666652 211 13333 6677789999985443333 33333467799999999999999888887765
No 495
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=87.31 E-value=2.7 Score=42.98 Aligned_cols=28 Identities=14% Similarity=0.285 Sum_probs=20.8
Q ss_pred CCCCCEEEECCCCCchHHHhHHHHHHHhhh
Q 017196 67 LFERDLCINSPTGSGKTLSYALPIVQTLSN 96 (375)
Q Consensus 67 ~~~~~~ii~a~TGsGKTl~~~l~il~~l~~ 96 (375)
..|+.+.|.+++|+|||. ++-++..+..
T Consensus 367 ~~G~~~aIvG~sGsGKST--Ll~ll~gl~~ 394 (582)
T PRK11176 367 PAGKTVALVGRSGSGKST--IANLLTRFYD 394 (582)
T ss_pred CCCCEEEEECCCCCCHHH--HHHHHHhccC
Confidence 378889999999999997 3444544443
No 496
>PRK13695 putative NTPase; Provisional
Probab=87.28 E-value=15 Score=30.95 Aligned_cols=24 Identities=33% Similarity=0.475 Sum_probs=16.9
Q ss_pred CEEEECCCCCchHHHhHHHHHHHhh
Q 017196 71 DLCINSPTGSGKTLSYALPIVQTLS 95 (375)
Q Consensus 71 ~~ii~a~TGsGKTl~~~l~il~~l~ 95 (375)
++.+.++.|+|||.... -+...+.
T Consensus 2 ~i~ltG~~G~GKTTll~-~i~~~l~ 25 (174)
T PRK13695 2 KIGITGPPGVGKTTLVL-KIAELLK 25 (174)
T ss_pred EEEEECCCCCCHHHHHH-HHHHHHH
Confidence 57899999999998544 3344443
No 497
>PF12846 AAA_10: AAA-like domain
Probab=87.07 E-value=1.1 Score=41.18 Aligned_cols=42 Identities=29% Similarity=0.351 Sum_probs=28.3
Q ss_pred CCEEEECCCCCchHHHhHHHHHHHhhhcccCCceEEEEcccHHHHH
Q 017196 70 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLAL 115 (375)
Q Consensus 70 ~~~ii~a~TGsGKTl~~~l~il~~l~~~~~~~~~~lil~Pt~~L~~ 115 (375)
.+++|.|+||+|||.... .++..+.... ..++++=|..+...
T Consensus 2 ~h~~i~G~tGsGKT~~~~-~l~~~~~~~g---~~~~i~D~~g~~~~ 43 (304)
T PF12846_consen 2 PHTLILGKTGSGKTTLLK-NLLEQLIRRG---PRVVIFDPKGDYSP 43 (304)
T ss_pred CeEEEECCCCCcHHHHHH-HHHHHHHHcC---CCEEEEcCCchHHH
Confidence 478999999999998765 4444443332 35777777655444
No 498
>PHA02244 ATPase-like protein
Probab=87.05 E-value=0.65 Score=44.26 Aligned_cols=22 Identities=18% Similarity=0.060 Sum_probs=18.1
Q ss_pred CCCCCCCEEEECCCCCchHHHh
Q 017196 65 PGLFERDLCINSPTGSGKTLSY 86 (375)
Q Consensus 65 ~~~~~~~~ii~a~TGsGKTl~~ 86 (375)
.+..+.++++.+|||+|||..+
T Consensus 115 ~l~~~~PVLL~GppGtGKTtLA 136 (383)
T PHA02244 115 IVNANIPVFLKGGAGSGKNHIA 136 (383)
T ss_pred HHhcCCCEEEECCCCCCHHHHH
Confidence 3347889999999999999753
No 499
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=87.04 E-value=3.6 Score=40.70 Aligned_cols=74 Identities=20% Similarity=0.260 Sum_probs=53.9
Q ss_pred CCceEEEEcccHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcC-CCcEEEe
Q 017196 100 RCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQS-AVDILVA 178 (375)
Q Consensus 100 ~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~IiV~ 178 (375)
..+.+||.+++..-|+-+...+.+. +.+++.++|+.+...... .++.+.. ..+|+|+
T Consensus 516 ~~ppiIIFvN~kk~~d~lAk~LeK~----g~~~~tlHg~k~qeQRe~------------------aL~~fr~~t~dIlVa 573 (673)
T KOG0333|consen 516 FDPPIIIFVNTKKGADALAKILEKA----GYKVTTLHGGKSQEQREN------------------ALADFREGTGDILVA 573 (673)
T ss_pred CCCCEEEEEechhhHHHHHHHHhhc----cceEEEeeCCccHHHHHH------------------HHHHHHhcCCCEEEE
Confidence 3467999999998888777777665 789999999987655432 2233444 5899999
Q ss_pred CcHHHHHHHhhcCCCCCCCccEEE
Q 017196 179 TPGRLMDHINATRGFTLEHLCYLV 202 (375)
Q Consensus 179 Tp~~l~~~l~~~~~~~~~~~~~vI 202 (375)
|..- .++++..++++||
T Consensus 574 TDvA-------gRGIDIpnVSlVi 590 (673)
T KOG0333|consen 574 TDVA-------GRGIDIPNVSLVI 590 (673)
T ss_pred eccc-------ccCCCCCccceee
Confidence 9531 2568888888875
No 500
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=86.98 E-value=0.84 Score=38.61 Aligned_cols=26 Identities=27% Similarity=0.526 Sum_probs=18.3
Q ss_pred CEEEECCCCCchHHHhHHHHHHHhhhc
Q 017196 71 DLCINSPTGSGKTLSYALPIVQTLSNR 97 (375)
Q Consensus 71 ~~ii~a~TGsGKTl~~~l~il~~l~~~ 97 (375)
++++.++.|+|||.. +.-+++.+...
T Consensus 1 ~i~iTG~pG~GKTTl-l~k~i~~l~~~ 26 (168)
T PF03266_consen 1 HIFITGPPGVGKTTL-LKKVIEELKKK 26 (168)
T ss_dssp EEEEES-TTSSHHHH-HHHHHHHHHHT
T ss_pred CEEEECcCCCCHHHH-HHHHHHHhhcc
Confidence 478999999999975 45566666543
Done!