Query 017196
Match_columns 375
No_of_seqs 135 out of 1708
Neff 9.1
Searched_HMMs 29240
Date Mon Mar 25 10:30:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017196.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017196hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2db3_A ATP-dependent RNA helic 100.0 1E-42 3.6E-47 339.7 30.1 287 16-375 50-340 (434)
2 2i4i_A ATP-dependent RNA helic 100.0 6.4E-41 2.2E-45 324.8 29.4 289 16-374 9-315 (417)
3 2j0s_A ATP-dependent RNA helic 100.0 6.7E-40 2.3E-44 317.2 27.6 283 18-375 33-316 (410)
4 1xti_A Probable ATP-dependent 100.0 1.7E-38 5.8E-43 305.1 30.9 280 22-374 8-289 (391)
5 1s2m_A Putative ATP-dependent 100.0 1.5E-38 5.1E-43 306.6 29.0 279 20-374 19-297 (400)
6 3eiq_A Eukaryotic initiation f 100.0 1.7E-38 5.7E-43 307.4 28.4 282 19-374 37-319 (414)
7 3pey_A ATP-dependent RNA helic 100.0 3.7E-38 1.3E-42 302.6 25.5 280 19-375 2-283 (395)
8 3fht_A ATP-dependent RNA helic 100.0 3.2E-38 1.1E-42 305.1 24.6 281 19-374 22-305 (412)
9 1fuu_A Yeast initiation factor 100.0 1.2E-38 4.1E-43 306.3 19.1 282 18-375 17-299 (394)
10 1hv8_A Putative ATP-dependent 100.0 8.2E-37 2.8E-41 290.4 26.6 274 20-374 4-277 (367)
11 3fmp_B ATP-dependent RNA helic 100.0 6.2E-38 2.1E-42 309.8 17.4 281 20-375 90-373 (479)
12 3fe2_A Probable ATP-dependent 100.0 1.2E-36 4.1E-41 274.0 20.4 214 16-299 23-240 (242)
13 3sqw_A ATP-dependent RNA helic 100.0 1E-35 3.6E-40 300.5 26.8 287 35-374 28-330 (579)
14 3i5x_A ATP-dependent RNA helic 100.0 3.6E-35 1.2E-39 295.6 27.8 288 35-375 79-382 (563)
15 3iuy_A Probable ATP-dependent 100.0 2.6E-35 8.8E-40 262.8 20.3 216 9-295 6-227 (228)
16 1wrb_A DJVLGB; RNA helicase, D 100.0 2E-35 6.7E-40 267.8 18.5 215 20-300 21-243 (253)
17 3ber_A Probable ATP-dependent 100.0 4.1E-35 1.4E-39 265.0 20.4 209 19-297 40-248 (249)
18 2z0m_A 337AA long hypothetical 100.0 2.3E-34 8E-39 270.4 25.7 255 35-374 1-255 (337)
19 1vec_A ATP-dependent RNA helic 100.0 1.5E-34 5.1E-39 253.6 22.1 202 22-294 3-205 (206)
20 3fho_A ATP-dependent RNA helic 100.0 1.5E-35 5.3E-40 294.5 17.2 270 35-375 126-397 (508)
21 2pl3_A Probable ATP-dependent 100.0 1.7E-34 5.7E-39 258.9 21.9 211 18-298 21-234 (236)
22 1q0u_A Bstdead; DEAD protein, 100.0 6E-35 2E-39 258.8 18.6 208 21-299 3-214 (219)
23 3fmo_B ATP-dependent RNA helic 100.0 7.2E-35 2.5E-39 270.4 19.7 207 20-297 90-298 (300)
24 2oxc_A Probable ATP-dependent 100.0 1.6E-34 5.6E-39 258.0 21.3 207 18-296 20-228 (230)
25 3bor_A Human initiation factor 100.0 6.5E-35 2.2E-39 261.8 18.8 210 17-297 25-235 (237)
26 1qde_A EIF4A, translation init 100.0 2.5E-34 8.5E-39 255.5 20.1 210 18-299 10-219 (224)
27 1t6n_A Probable ATP-dependent 100.0 1.8E-33 6.3E-38 249.3 25.1 208 18-295 10-219 (220)
28 3dkp_A Probable ATP-dependent 100.0 9.4E-35 3.2E-39 261.9 16.6 218 15-299 18-243 (245)
29 3ly5_A ATP-dependent RNA helic 100.0 2.7E-34 9.2E-39 261.7 19.1 194 35-291 61-257 (262)
30 2gxq_A Heat resistant RNA depe 100.0 1E-33 3.5E-38 248.3 20.7 203 23-297 2-206 (207)
31 3oiy_A Reverse gyrase helicase 100.0 2.2E-32 7.4E-37 265.1 21.2 262 37-368 8-286 (414)
32 2v1x_A ATP-dependent DNA helic 100.0 2.8E-32 9.6E-37 274.5 20.7 260 35-375 28-307 (591)
33 1oyw_A RECQ helicase, ATP-depe 100.0 3.9E-32 1.3E-36 270.4 20.2 270 22-375 2-276 (523)
34 2zj8_A DNA helicase, putative 100.0 1.7E-31 5.7E-36 276.2 20.3 268 23-375 2-310 (720)
35 2va8_A SSO2462, SKI2-type heli 100.0 1E-30 3.4E-35 270.3 24.3 274 20-375 6-328 (715)
36 3l9o_A ATP-dependent RNA helic 100.0 1E-30 3.4E-35 279.1 18.7 182 35-295 169-352 (1108)
37 2p6r_A Afuhel308 helicase; pro 100.0 1.1E-30 3.6E-35 269.5 17.0 263 35-375 10-312 (702)
38 4ddu_A Reverse gyrase; topoiso 100.0 1.8E-29 6E-34 269.4 24.2 259 40-368 68-343 (1104)
39 2ykg_A Probable ATP-dependent 100.0 1.9E-30 6.5E-35 267.5 16.2 147 40-212 3-151 (696)
40 4a2p_A RIG-I, retinoic acid in 100.0 2.1E-29 7.3E-34 252.6 20.4 141 47-213 4-146 (556)
41 3tbk_A RIG-I helicase domain; 100.0 6E-29 2E-33 249.0 20.6 139 50-213 4-143 (555)
42 1gku_B Reverse gyrase, TOP-RG; 100.0 1.9E-29 6.4E-34 269.1 17.6 260 39-371 46-310 (1054)
43 4f92_B U5 small nuclear ribonu 100.0 7.8E-29 2.7E-33 273.2 22.7 277 35-375 911-1229(1724)
44 4f92_B U5 small nuclear ribonu 100.0 6E-29 2.1E-33 274.1 19.1 278 34-375 65-394 (1724)
45 4a2q_A RIG-I, retinoic acid in 100.0 4.2E-28 1.4E-32 253.3 22.3 143 45-213 243-387 (797)
46 2xgj_A ATP-dependent RNA helic 100.0 3.8E-28 1.3E-32 257.1 22.1 156 44-279 81-236 (1010)
47 1wp9_A ATP-dependent RNA helic 100.0 3.2E-27 1.1E-31 231.8 24.8 132 50-212 9-140 (494)
48 4a4z_A Antiviral helicase SKI2 100.0 1E-27 3.5E-32 253.7 18.2 157 45-279 35-191 (997)
49 4a2w_A RIG-I, retinoic acid in 100.0 2.2E-27 7.7E-32 250.9 20.1 146 43-213 241-387 (936)
50 1tf5_A Preprotein translocase 99.9 2.8E-27 9.6E-32 240.1 18.0 290 45-374 79-471 (844)
51 2eyq_A TRCF, transcription-rep 99.9 8.9E-27 3E-31 250.0 22.6 261 35-374 588-853 (1151)
52 1gm5_A RECG; helicase, replica 99.9 5.2E-27 1.8E-31 241.5 17.6 262 36-375 355-629 (780)
53 2fsf_A Preprotein translocase 99.9 1.4E-26 4.9E-31 234.4 15.4 148 45-226 70-239 (853)
54 4gl2_A Interferon-induced heli 99.9 7.8E-27 2.7E-31 240.6 12.4 137 50-212 7-151 (699)
55 1nkt_A Preprotein translocase 99.9 1.6E-25 5.5E-30 227.1 19.1 290 45-374 107-499 (922)
56 2oca_A DAR protein, ATP-depend 99.9 5.9E-26 2E-30 225.7 13.5 245 49-374 112-386 (510)
57 2fwr_A DNA repair protein RAD2 99.9 1.1E-25 3.7E-30 221.7 14.7 225 50-374 93-383 (472)
58 3o8b_A HCV NS3 protease/helica 99.9 7.4E-25 2.5E-29 220.2 16.6 220 50-375 217-436 (666)
59 2xau_A PRE-mRNA-splicing facto 99.9 1.5E-23 5.1E-28 216.9 25.9 269 20-375 70-354 (773)
60 2jlq_A Serine protease subunit 99.9 3.9E-24 1.3E-28 209.2 14.3 223 47-371 1-224 (451)
61 2whx_A Serine protease/ntpase/ 99.9 6.5E-24 2.2E-28 214.4 13.9 233 35-369 157-389 (618)
62 3b6e_A Interferon-induced heli 99.9 9.9E-24 3.4E-28 185.5 12.8 142 46-213 29-178 (216)
63 1yks_A Genome polyprotein [con 99.9 3.2E-24 1.1E-28 209.1 8.3 200 65-368 4-210 (440)
64 3h1t_A Type I site-specific re 99.9 2.3E-23 8E-28 210.6 12.9 143 49-226 177-330 (590)
65 2wv9_A Flavivirin protease NS2 99.9 4E-23 1.4E-27 210.1 13.2 229 43-368 203-443 (673)
66 2v6i_A RNA helicase; membrane, 99.9 2.8E-22 9.5E-27 194.9 16.8 206 68-370 1-206 (431)
67 2z83_A Helicase/nucleoside tri 99.9 4.8E-22 1.6E-26 194.8 15.5 206 66-368 18-223 (459)
68 3llm_A ATP-dependent RNA helic 99.9 8.7E-21 3E-25 169.5 16.6 169 48-291 59-231 (235)
69 1rif_A DAR protein, DNA helica 99.9 2.7E-21 9.3E-26 177.5 13.1 156 50-282 113-268 (282)
70 1z63_A Helicase of the SNF2/RA 99.8 2.4E-21 8.1E-26 192.0 11.6 130 49-213 36-165 (500)
71 3dmq_A RNA polymerase-associat 99.8 4.5E-21 1.5E-25 203.2 11.5 137 49-212 152-288 (968)
72 2w00_A HSDR, R.ECOR124I; ATP-b 99.8 2.4E-20 8.2E-25 196.9 13.8 145 49-225 270-426 (1038)
73 2ipc_A Preprotein translocase 99.8 7E-19 2.4E-23 178.3 19.8 132 45-210 75-215 (997)
74 2fz4_A DNA repair protein RAD2 99.8 3.5E-19 1.2E-23 159.2 14.4 117 50-215 93-210 (237)
75 3rc3_A ATP-dependent RNA helic 99.8 6.5E-20 2.2E-24 186.1 7.9 207 68-375 154-360 (677)
76 3mwy_W Chromo domain-containin 99.8 9E-19 3.1E-23 182.6 16.4 148 49-212 235-382 (800)
77 1z3i_X Similar to RAD54-like; 99.8 9.2E-18 3.1E-22 170.9 21.3 143 50-212 55-207 (644)
78 3crv_A XPD/RAD3 related DNA he 99.7 2.3E-17 7.7E-22 165.2 8.7 156 47-211 1-187 (551)
79 3jux_A Protein translocase sub 99.7 4.4E-15 1.5E-19 148.2 19.9 311 45-374 71-513 (822)
80 2vl7_A XPD; helicase, unknown 99.6 7.2E-16 2.5E-20 153.8 7.6 153 46-210 4-188 (540)
81 4a15_A XPD helicase, ATP-depen 99.4 9.6E-14 3.3E-18 140.3 7.8 89 50-141 3-91 (620)
82 1c4o_A DNA nucleotide excision 99.4 7.5E-12 2.6E-16 127.5 18.6 73 47-127 6-79 (664)
83 2d7d_A Uvrabc system protein B 99.3 1E-10 3.5E-15 119.1 18.4 71 50-127 12-83 (661)
84 1w36_D RECD, exodeoxyribonucle 98.7 2.3E-08 8E-13 100.8 9.8 84 38-127 136-222 (608)
85 2p6n_A ATP-dependent RNA helic 98.5 1.3E-07 4.6E-12 80.9 6.5 87 283-374 7-93 (191)
86 1t5i_A C_terminal domain of A 98.5 1.8E-07 6E-12 78.7 6.8 68 304-374 3-70 (172)
87 2hjv_A ATP-dependent RNA helic 98.5 1.8E-07 6E-12 77.9 6.6 68 304-374 7-74 (163)
88 2rb4_A ATP-dependent RNA helic 98.4 3.5E-07 1.2E-11 77.0 6.4 68 304-374 5-73 (175)
89 1fuk_A Eukaryotic initiation f 98.4 4E-07 1.4E-11 75.9 6.7 67 305-374 2-69 (165)
90 2jgn_A DBX, DDX3, ATP-dependen 98.4 6.2E-07 2.1E-11 76.3 7.2 70 303-375 16-86 (185)
91 2gk6_A Regulator of nonsense t 98.2 1.2E-05 4.2E-10 81.2 12.8 79 48-137 178-256 (624)
92 3eaq_A Heat resistant RNA depe 98.2 3.1E-06 1E-10 73.6 6.9 66 306-374 5-70 (212)
93 3i32_A Heat resistant RNA depe 98.1 3.7E-06 1.3E-10 77.0 7.3 67 306-375 2-68 (300)
94 4b3f_X DNA-binding protein smu 98.1 9.1E-06 3.1E-10 82.6 10.3 79 49-138 188-266 (646)
95 2yjt_D ATP-dependent RNA helic 97.4 3.7E-07 1.3E-11 76.5 0.0 67 306-375 3-70 (170)
96 2xzl_A ATP-dependent helicase 98.0 2.9E-05 1E-09 80.5 12.5 78 48-136 358-435 (802)
97 2wjy_A Regulator of nonsense t 98.0 4.2E-05 1.4E-09 79.2 12.7 78 48-136 354-431 (800)
98 3upu_A ATP-dependent DNA helic 98.0 1E-05 3.5E-10 78.7 7.7 75 44-121 19-94 (459)
99 3e1s_A Exodeoxyribonuclease V, 97.8 7.2E-05 2.4E-09 74.7 10.6 64 50-121 189-252 (574)
100 2o0j_A Terminase, DNA packagin 97.1 0.012 4E-07 55.4 15.6 71 50-126 163-233 (385)
101 3lfu_A DNA helicase II; SF1 he 97.1 0.0012 4E-08 66.8 9.1 82 49-136 8-91 (647)
102 3cpe_A Terminase, DNA packagin 97.1 0.0069 2.4E-07 60.6 14.6 73 50-128 163-235 (592)
103 3vkw_A Replicase large subunit 96.9 0.0025 8.7E-08 60.9 8.8 45 70-123 162-206 (446)
104 1uaa_A REP helicase, protein ( 96.9 0.0023 8E-08 65.1 8.7 82 50-137 2-86 (673)
105 3ec2_A DNA replication protein 96.8 0.0077 2.6E-07 50.1 10.1 19 68-86 37-55 (180)
106 1a5t_A Delta prime, HOLB; zinc 96.8 0.0054 1.8E-07 56.7 9.5 45 51-96 3-50 (334)
107 1pjr_A PCRA; DNA repair, DNA r 96.7 0.0045 1.5E-07 63.5 9.2 83 49-137 10-94 (724)
108 1z5z_A Helicase of the SNF2/RA 96.6 0.0015 5E-08 58.8 4.3 58 315-374 93-152 (271)
109 3te6_A Regulatory protein SIR3 96.6 0.0096 3.3E-07 54.6 9.4 28 68-96 44-71 (318)
110 1xx6_A Thymidine kinase; NESG, 96.5 0.0057 2E-07 51.8 7.4 40 68-111 7-46 (191)
111 1l8q_A Chromosomal replication 96.4 0.041 1.4E-06 50.3 12.7 19 68-86 36-54 (324)
112 2orw_A Thymidine kinase; TMTK, 96.4 0.00089 3.1E-08 56.5 1.3 40 69-112 3-42 (184)
113 2b8t_A Thymidine kinase; deoxy 96.3 0.003 1E-07 54.9 4.2 40 68-111 11-50 (223)
114 2j9r_A Thymidine kinase; TK1, 96.2 0.0056 1.9E-07 52.6 5.6 41 68-112 27-67 (214)
115 2chg_A Replication factor C sm 96.2 0.054 1.8E-06 45.8 12.0 17 70-86 39-55 (226)
116 3e2i_A Thymidine kinase; Zn-bi 96.1 0.0044 1.5E-07 53.2 4.3 41 68-112 27-67 (219)
117 2zpa_A Uncharacterized protein 96.0 0.018 6E-07 57.9 8.5 60 50-118 175-234 (671)
118 1w4r_A Thymidine kinase; type 95.9 0.018 6.2E-07 48.6 6.9 38 69-110 20-57 (195)
119 3u61_B DNA polymerase accessor 95.9 0.052 1.8E-06 49.5 10.8 29 196-224 104-132 (324)
120 3bos_A Putative DNA replicatio 95.9 0.052 1.8E-06 46.8 10.3 19 68-86 51-69 (242)
121 2v1u_A Cell division control p 95.8 0.086 2.9E-06 49.0 12.2 19 68-86 43-61 (387)
122 2z4s_A Chromosomal replication 95.7 0.084 2.9E-06 50.6 11.8 39 69-109 130-168 (440)
123 3u4q_A ATP-dependent helicase/ 95.7 0.023 7.8E-07 61.8 8.5 69 49-123 9-79 (1232)
124 1d2n_A N-ethylmaleimide-sensit 95.6 0.083 2.8E-06 46.9 10.9 19 68-86 63-81 (272)
125 2w58_A DNAI, primosome compone 95.5 0.071 2.4E-06 44.9 9.6 24 70-94 55-78 (202)
126 3syl_A Protein CBBX; photosynt 95.5 0.036 1.2E-06 50.2 8.0 19 68-86 66-84 (309)
127 4b4t_J 26S protease regulatory 95.5 0.38 1.3E-05 45.3 15.1 19 68-86 181-199 (405)
128 1iqp_A RFCS; clamp loader, ext 95.5 0.038 1.3E-06 50.2 8.2 16 71-86 48-63 (327)
129 4b4t_M 26S protease regulatory 95.4 0.4 1.4E-05 45.7 15.1 56 18-86 174-232 (434)
130 3vfd_A Spastin; ATPase, microt 95.1 0.12 3.9E-06 48.7 10.3 18 69-86 148-165 (389)
131 3h4m_A Proteasome-activating n 95.1 0.22 7.4E-06 44.3 11.8 20 67-86 49-68 (285)
132 2qby_B CDC6 homolog 3, cell di 95.1 0.066 2.3E-06 49.9 8.6 25 69-94 45-69 (384)
133 1xwi_A SKD1 protein; VPS4B, AA 94.9 0.066 2.3E-06 49.0 8.0 18 69-86 45-62 (322)
134 2qby_A CDC6 homolog 1, cell di 94.9 0.077 2.6E-06 49.2 8.5 19 68-86 44-62 (386)
135 2orv_A Thymidine kinase; TP4A 94.9 0.035 1.2E-06 48.2 5.5 40 69-112 19-58 (234)
136 2kjq_A DNAA-related protein; s 94.8 0.033 1.1E-06 44.9 4.9 18 68-85 35-52 (149)
137 2chq_A Replication factor C sm 94.8 0.052 1.8E-06 49.1 6.8 16 71-86 40-55 (319)
138 4b4t_H 26S protease regulatory 94.7 0.15 5.1E-06 48.9 10.0 19 68-86 242-260 (467)
139 1sxj_E Activator 1 40 kDa subu 94.7 0.4 1.4E-05 44.0 12.8 16 71-86 38-53 (354)
140 2qp9_X Vacuolar protein sortin 94.7 0.15 5.1E-06 47.4 9.8 19 68-86 83-101 (355)
141 1sxj_D Activator 1 41 kDa subu 94.6 0.045 1.6E-06 50.4 6.1 17 70-86 59-75 (353)
142 3eie_A Vacuolar protein sortin 94.5 0.16 5.5E-06 46.3 9.6 18 69-86 51-68 (322)
143 1fnn_A CDC6P, cell division co 94.3 0.16 5.4E-06 47.3 9.1 16 71-86 46-61 (389)
144 2w0m_A SSO2452; RECA, SSPF, un 94.2 0.29 9.9E-06 41.7 9.9 29 58-86 11-40 (235)
145 1sxj_C Activator 1 40 kDa subu 94.0 0.13 4.4E-06 47.3 7.7 16 71-86 48-63 (340)
146 2gno_A DNA polymerase III, gam 93.8 0.11 3.9E-06 47.1 6.9 17 70-86 19-35 (305)
147 1jr3_A DNA polymerase III subu 93.8 0.21 7E-06 46.2 8.7 17 70-86 39-55 (373)
148 1njg_A DNA polymerase III subu 93.6 0.92 3.2E-05 38.4 12.1 17 70-86 46-62 (250)
149 1sxj_B Activator 1 37 kDa subu 93.4 0.34 1.2E-05 43.6 9.4 16 71-86 44-59 (323)
150 3kl4_A SRP54, signal recogniti 93.1 0.61 2.1E-05 44.4 10.8 20 69-88 97-116 (433)
151 2zan_A Vacuolar protein sortin 92.6 0.2 6.9E-06 48.0 6.9 18 69-86 167-184 (444)
152 2i1q_A DNA repair and recombin 92.5 1.2 4E-05 40.5 11.7 29 58-86 86-115 (322)
153 2dr3_A UPF0273 protein PH0284; 92.1 0.39 1.3E-05 41.4 7.5 54 66-124 20-73 (247)
154 3hu3_A Transitional endoplasmi 92.0 0.58 2E-05 45.4 9.3 19 68-86 237-255 (489)
155 2hjv_A ATP-dependent RNA helic 91.7 1.8 6.3E-05 34.7 10.8 76 102-206 36-112 (163)
156 1v5w_A DMC1, meiotic recombina 91.6 4.4 0.00015 37.1 14.6 51 59-110 111-165 (343)
157 3hjh_A Transcription-repair-co 91.3 1.6 5.5E-05 42.1 11.6 53 68-127 13-65 (483)
158 2p6n_A ATP-dependent RNA helic 91.1 1.9 6.5E-05 35.8 10.6 76 102-206 55-131 (191)
159 2rb4_A ATP-dependent RNA helic 91.1 1.5 5E-05 35.8 9.7 76 101-205 34-110 (175)
160 3pvs_A Replication-associated 91.0 0.33 1.1E-05 46.6 6.4 17 70-86 51-67 (447)
161 2z43_A DNA repair and recombin 90.7 1.7 5.9E-05 39.5 10.7 66 58-124 95-165 (324)
162 2zr9_A Protein RECA, recombina 90.7 0.52 1.8E-05 43.6 7.2 47 59-109 49-97 (349)
163 1fuk_A Eukaryotic initiation f 90.7 2.3 7.8E-05 34.2 10.4 76 102-206 31-107 (165)
164 3n70_A Transport activator; si 90.1 0.24 8.3E-06 39.3 3.8 19 68-86 23-41 (145)
165 2jgn_A DBX, DDX3, ATP-dependen 90.1 1.1 3.8E-05 37.1 8.1 93 79-205 29-122 (185)
166 3eaq_A Heat resistant RNA depe 89.9 2.1 7.2E-05 36.2 9.9 73 102-203 32-105 (212)
167 1xp8_A RECA protein, recombina 89.8 0.97 3.3E-05 42.0 8.3 49 58-110 61-111 (366)
168 1tue_A Replication protein E1; 89.8 0.41 1.4E-05 40.7 5.1 53 37-92 28-80 (212)
169 3hr8_A Protein RECA; alpha and 89.5 0.74 2.5E-05 42.6 7.1 48 59-110 49-98 (356)
170 1w5s_A Origin recognition comp 89.3 2.3 7.9E-05 39.5 10.7 18 69-86 50-69 (412)
171 2ehv_A Hypothetical protein PH 89.3 0.48 1.6E-05 40.9 5.5 22 65-86 26-47 (251)
172 3k1j_A LON protease, ATP-depen 89.3 1.5 5.1E-05 43.7 9.7 19 68-86 59-77 (604)
173 3cmu_A Protein RECA, recombina 89.2 0.24 8.2E-06 55.8 4.1 49 59-111 1415-1465(2050)
174 2i4i_A ATP-dependent RNA helic 88.8 2.8 9.6E-05 39.0 10.9 76 100-204 275-351 (417)
175 1t5i_A C_terminal domain of A 88.8 2.3 7.8E-05 34.6 9.0 76 102-206 32-108 (172)
176 3io5_A Recombination and repai 88.7 0.61 2.1E-05 42.5 5.7 45 66-113 26-70 (333)
177 3co5_A Putative two-component 88.5 0.3 1E-05 38.7 3.2 18 68-85 26-43 (143)
178 3dm5_A SRP54, signal recogniti 88.5 2.6 9E-05 40.1 10.3 61 70-137 101-163 (443)
179 3i5x_A ATP-dependent RNA helic 87.7 4.5 0.00015 39.5 12.0 99 81-206 320-419 (563)
180 2oap_1 GSPE-2, type II secreti 86.8 1.2 4.2E-05 43.4 7.0 40 41-85 237-276 (511)
181 2qgz_A Helicase loader, putati 86.8 0.79 2.7E-05 41.5 5.4 26 69-95 152-177 (308)
182 3sqw_A ATP-dependent RNA helic 86.2 4.7 0.00016 39.7 11.1 82 100-207 287-369 (579)
183 2p65_A Hypothetical protein PF 85.8 0.28 9.7E-06 40.0 1.7 19 68-86 42-60 (187)
184 3cf2_A TER ATPase, transitiona 85.1 5.2 0.00018 41.1 11.0 19 68-86 237-255 (806)
185 1p9r_A General secretion pathw 85.0 1.4 4.8E-05 41.7 6.3 31 53-85 153-183 (418)
186 4b4t_L 26S protease subunit RP 84.8 0.62 2.1E-05 44.4 3.7 19 68-86 214-232 (437)
187 2c9o_A RUVB-like 1; hexameric 84.7 1.5 5.1E-05 42.0 6.5 20 67-86 61-80 (456)
188 3cmu_A Protein RECA, recombina 84.2 3.3 0.00011 46.9 9.6 56 58-118 1068-1125(2050)
189 2cvh_A DNA repair and recombin 84.1 1.2 4.1E-05 37.4 5.0 30 58-87 8-38 (220)
190 3vkg_A Dynein heavy chain, cyt 83.9 1 3.6E-05 53.0 5.7 52 35-87 873-924 (3245)
191 4b4t_K 26S protease regulatory 83.9 0.76 2.6E-05 43.7 3.9 19 68-86 205-223 (428)
192 1c4o_A DNA nucleotide excision 83.8 2.8 9.5E-05 42.3 8.3 81 100-209 438-519 (664)
193 2d7d_A Uvrabc system protein B 83.8 3.1 0.00011 41.8 8.6 81 100-209 444-525 (661)
194 2bjv_A PSP operon transcriptio 83.6 0.78 2.7E-05 40.2 3.7 19 68-86 28-46 (265)
195 3hws_A ATP-dependent CLP prote 83.5 0.46 1.6E-05 44.0 2.2 19 68-86 50-68 (363)
196 1jbk_A CLPB protein; beta barr 83.3 1.1 3.8E-05 36.3 4.3 18 69-86 43-60 (195)
197 1u0j_A DNA replication protein 83.3 2.4 8.1E-05 37.5 6.6 68 8-87 54-122 (267)
198 3i32_A Heat resistant RNA depe 83.2 4.6 0.00016 36.3 8.7 76 101-205 28-104 (300)
199 2r44_A Uncharacterized protein 82.8 0.24 8.3E-06 45.1 -0.0 19 68-86 45-63 (331)
200 2eyq_A TRCF, transcription-rep 82.6 3.1 0.00011 44.8 8.4 83 100-209 811-894 (1151)
201 4b4t_I 26S protease regulatory 82.3 1.1 3.7E-05 42.6 4.2 19 68-86 215-233 (437)
202 2q6t_A DNAB replication FORK h 82.3 1.7 6E-05 41.4 5.8 60 58-121 189-248 (444)
203 2zts_A Putative uncharacterize 82.2 0.9 3.1E-05 39.1 3.5 55 66-124 27-81 (251)
204 2r6a_A DNAB helicase, replicat 81.9 1.9 6.4E-05 41.3 5.9 49 58-109 192-240 (454)
205 3iij_A Coilin-interacting nucl 81.4 1 3.4E-05 36.8 3.3 20 67-86 9-28 (180)
206 3cf0_A Transitional endoplasmi 81.1 0.82 2.8E-05 41.1 2.9 20 67-86 47-66 (301)
207 3bh0_A DNAB-like replicative h 81.1 2.6 8.8E-05 38.1 6.3 61 58-123 57-117 (315)
208 2v1x_A ATP-dependent DNA helic 81.1 7.9 0.00027 38.3 10.2 77 100-204 266-342 (591)
209 3fht_A ATP-dependent RNA helic 80.9 5.8 0.0002 36.6 8.9 75 102-205 267-342 (412)
210 3nbx_X ATPase RAVA; AAA+ ATPas 80.8 0.36 1.2E-05 47.0 0.3 20 66-85 38-57 (500)
211 2db3_A ATP-dependent RNA helic 80.4 9.3 0.00032 36.0 10.2 74 103-205 302-376 (434)
212 3pey_A ATP-dependent RNA helic 80.4 6.2 0.00021 36.1 8.8 79 101-208 243-322 (395)
213 1hv8_A Putative ATP-dependent 80.3 5.9 0.0002 35.8 8.6 78 100-206 237-315 (367)
214 1e9r_A Conjugal transfer prote 80.2 1.8 6.1E-05 41.0 5.1 44 68-115 52-95 (437)
215 1ojl_A Transcriptional regulat 80.2 1.4 4.9E-05 39.7 4.1 19 68-86 24-42 (304)
216 2qz4_A Paraplegin; AAA+, SPG7, 80.0 0.94 3.2E-05 39.4 2.8 19 68-86 38-56 (262)
217 3vaa_A Shikimate kinase, SK; s 79.9 0.89 3E-05 38.0 2.5 19 68-86 24-42 (199)
218 1oyw_A RECQ helicase, ATP-depe 79.9 7.6 0.00026 37.8 9.6 77 100-205 235-312 (523)
219 2l8b_A Protein TRAI, DNA helic 79.8 4.6 0.00016 33.4 6.6 60 52-116 36-95 (189)
220 1xti_A Probable ATP-dependent 79.4 6.5 0.00022 36.0 8.6 78 101-207 250-328 (391)
221 2eyu_A Twitching motility prot 79.3 1.3 4.6E-05 38.9 3.6 20 66-85 22-41 (261)
222 4akg_A Glutathione S-transfera 79.2 1.5 5.2E-05 51.1 4.7 52 35-87 890-941 (2695)
223 1w36_B RECB, exodeoxyribonucle 79.1 4.4 0.00015 43.8 8.1 54 70-123 17-78 (1180)
224 1cr0_A DNA primase/helicase; R 79.0 2.3 7.7E-05 37.9 5.1 29 58-86 24-52 (296)
225 1kgd_A CASK, peripheral plasma 79.0 1.1 3.6E-05 36.9 2.7 18 68-85 4-21 (180)
226 2qmh_A HPR kinase/phosphorylas 78.9 1.1 3.8E-05 37.8 2.7 18 68-85 33-50 (205)
227 1ofh_A ATP-dependent HSL prote 78.9 1.1 3.7E-05 40.0 3.0 19 68-86 49-67 (310)
228 3uk6_A RUVB-like 2; hexameric 78.8 1.4 4.8E-05 40.5 3.8 26 68-94 69-94 (368)
229 3a8t_A Adenylate isopentenyltr 78.7 1.1 3.8E-05 41.0 2.9 18 69-86 40-57 (339)
230 3u4q_B ATP-dependent helicase/ 78.6 3.3 0.00011 44.7 7.0 39 73-112 5-43 (1166)
231 3b9p_A CG5977-PA, isoform A; A 78.2 1.1 3.6E-05 40.0 2.6 19 68-86 53-71 (297)
232 3cmw_A Protein RECA, recombina 78.2 4.4 0.00015 45.2 7.8 61 58-125 1418-1480(1706)
233 3foj_A Uncharacterized protein 77.8 2.5 8.5E-05 30.8 4.2 37 332-371 56-92 (100)
234 4fcw_A Chaperone protein CLPB; 77.8 0.35 1.2E-05 43.4 -0.7 17 70-86 48-64 (311)
235 1s2m_A Putative ATP-dependent 77.7 7.9 0.00027 35.6 8.7 76 101-205 258-334 (400)
236 2qor_A Guanylate kinase; phosp 77.5 1.4 4.9E-05 36.8 3.1 19 67-85 10-28 (204)
237 1lvg_A Guanylate kinase, GMP k 77.5 1.2 3.9E-05 37.4 2.5 18 68-85 3-20 (198)
238 2ius_A DNA translocase FTSK; n 77.4 2.4 8.2E-05 41.2 5.0 19 68-86 166-184 (512)
239 3trf_A Shikimate kinase, SK; a 77.4 1.1 3.8E-05 36.7 2.3 19 69-87 5-23 (185)
240 3bgw_A DNAB-like replicative h 77.3 2.9 0.0001 39.9 5.5 60 58-122 186-245 (444)
241 1wv9_A Rhodanese homolog TT165 77.1 2.9 0.0001 30.0 4.4 36 333-371 54-89 (94)
242 3t15_A Ribulose bisphosphate c 76.9 1.3 4.3E-05 39.8 2.7 19 68-86 35-53 (293)
243 3eme_A Rhodanese-like domain p 76.8 2.5 8.5E-05 31.0 4.0 37 332-371 56-92 (103)
244 1lv7_A FTSH; alpha/beta domain 76.5 1.3 4.5E-05 38.5 2.7 18 69-86 45-62 (257)
245 1qhx_A CPT, protein (chloramph 76.4 1.4 4.8E-05 35.7 2.7 18 69-86 3-20 (178)
246 3tau_A Guanylate kinase, GMP k 76.4 1.4 4.7E-05 37.2 2.7 18 68-85 7-24 (208)
247 2j41_A Guanylate kinase; GMP, 76.3 1.4 4.6E-05 36.7 2.6 18 68-85 5-22 (207)
248 3gk5_A Uncharacterized rhodane 76.3 2.5 8.4E-05 31.5 3.8 46 323-371 45-91 (108)
249 1y63_A LMAJ004144AAA protein; 76.3 1.5 5.1E-05 36.1 2.8 19 68-86 9-27 (184)
250 2iut_A DNA translocase FTSK; n 76.1 3 0.0001 41.0 5.3 42 69-110 214-255 (574)
251 1zp6_A Hypothetical protein AT 76.1 1.1 3.9E-05 36.8 2.0 20 66-85 6-25 (191)
252 2j0s_A ATP-dependent RNA helic 76.1 7.4 0.00025 36.0 8.0 75 102-205 277-352 (410)
253 1um8_A ATP-dependent CLP prote 75.8 1.5 5.1E-05 40.7 3.0 19 68-86 71-89 (376)
254 3tr0_A Guanylate kinase, GMP k 75.7 1.5 5E-05 36.5 2.7 18 68-85 6-23 (205)
255 4a1f_A DNAB helicase, replicat 75.7 4 0.00014 37.4 5.7 60 58-122 35-94 (338)
256 3lw7_A Adenylate kinase relate 75.6 1.3 4.5E-05 35.4 2.3 16 71-86 3-18 (179)
257 1kag_A SKI, shikimate kinase I 75.4 1.6 5.6E-05 35.1 2.8 17 69-85 4-20 (173)
258 1q57_A DNA primase/helicase; d 75.2 2.9 0.0001 40.5 5.0 60 59-122 232-291 (503)
259 1wp9_A ATP-dependent RNA helic 74.8 13 0.00044 34.8 9.5 99 78-207 340-447 (494)
260 3iwh_A Rhodanese-like domain p 74.6 3.1 0.00011 30.8 4.0 36 332-370 56-91 (103)
261 3exa_A TRNA delta(2)-isopenten 74.5 1.8 6E-05 39.3 3.0 17 70-86 4-20 (322)
262 2r62_A Cell division protease 74.5 1 3.4E-05 39.5 1.3 19 68-86 43-61 (268)
263 4ag6_A VIRB4 ATPase, type IV s 74.4 3.6 0.00012 38.3 5.3 21 68-88 34-54 (392)
264 3foz_A TRNA delta(2)-isopenten 74.2 1.8 6.2E-05 39.2 3.0 17 70-86 11-27 (316)
265 1ex7_A Guanylate kinase; subst 73.7 1.5 5.1E-05 36.5 2.2 15 71-85 3-17 (186)
266 2v9p_A Replication protein E1; 73.7 4.9 0.00017 36.2 5.7 37 57-95 114-150 (305)
267 2ze6_A Isopentenyl transferase 73.6 1.5 5.1E-05 38.3 2.3 16 71-86 3-18 (253)
268 1vma_A Cell division protein F 73.1 7.7 0.00026 34.9 6.9 19 69-87 104-122 (306)
269 2ewv_A Twitching motility prot 73.0 1.8 6.3E-05 40.2 2.8 19 67-85 134-152 (372)
270 2v54_A DTMP kinase, thymidylat 73.0 2 6.8E-05 35.6 2.8 19 68-86 3-21 (204)
271 3f9v_A Minichromosome maintena 72.9 2.5 8.6E-05 42.0 3.9 15 71-85 329-343 (595)
272 1kht_A Adenylate kinase; phosp 72.9 1.7 5.9E-05 35.5 2.4 18 69-86 3-20 (192)
273 3cm0_A Adenylate kinase; ATP-b 72.8 1.3 4.5E-05 36.2 1.6 19 68-86 3-21 (186)
274 1n0w_A DNA repair protein RAD5 72.6 2.7 9.3E-05 35.8 3.7 30 59-88 13-43 (243)
275 3pfi_A Holliday junction ATP-d 72.6 1.9 6.4E-05 39.2 2.7 18 69-86 55-72 (338)
276 3hix_A ALR3790 protein; rhodan 72.3 3.9 0.00013 30.2 4.0 37 332-371 52-89 (106)
277 2gza_A Type IV secretion syste 72.2 2.1 7.1E-05 39.7 3.0 18 68-85 174-191 (361)
278 3flh_A Uncharacterized protein 72.2 3.2 0.00011 31.6 3.7 37 332-371 71-109 (124)
279 2rhm_A Putative kinase; P-loop 72.1 1.7 5.7E-05 35.7 2.1 19 68-86 4-22 (193)
280 3d8b_A Fidgetin-like protein 1 72.0 1.9 6.4E-05 39.8 2.6 19 68-86 116-134 (357)
281 1hqc_A RUVB; extended AAA-ATPa 72.0 1.6 5.5E-05 39.2 2.2 18 69-86 38-55 (324)
282 3ney_A 55 kDa erythrocyte memb 71.9 2.2 7.5E-05 35.9 2.8 18 68-85 18-35 (197)
283 3ice_A Transcription terminati 71.5 7.8 0.00027 36.3 6.6 35 51-86 157-191 (422)
284 3hgt_A HDA1 complex subunit 3; 71.4 5 0.00017 36.4 5.2 55 314-371 105-161 (328)
285 1z6g_A Guanylate kinase; struc 71.2 2.2 7.6E-05 36.2 2.7 18 68-85 22-39 (218)
286 3cf2_A TER ATPase, transitiona 71.2 5.2 0.00018 41.1 5.9 54 20-86 472-528 (806)
287 1ixz_A ATP-dependent metallopr 71.1 2.4 8.1E-05 36.7 3.0 16 70-85 50-65 (254)
288 3kb2_A SPBC2 prophage-derived 71.0 1.9 6.5E-05 34.5 2.2 16 71-86 3-18 (173)
289 2pt7_A CAG-ALFA; ATPase, prote 71.0 3.9 0.00013 37.3 4.5 17 68-84 170-186 (330)
290 2qt1_A Nicotinamide riboside k 70.8 1.8 6.1E-05 36.2 2.0 23 63-85 15-37 (207)
291 3jvv_A Twitching mobility prot 70.5 2.3 7.8E-05 39.3 2.8 18 68-85 122-139 (356)
292 4eun_A Thermoresistant glucoki 70.3 2.2 7.6E-05 35.5 2.5 19 68-86 28-46 (200)
293 2oca_A DAR protein, ATP-depend 70.1 18 0.0006 34.7 9.3 77 103-207 349-426 (510)
294 3g5j_A Putative ATP/GTP bindin 70.1 4.5 0.00015 30.9 4.1 36 333-371 90-126 (134)
295 1knq_A Gluconate kinase; ALFA/ 70.0 2 6.9E-05 34.7 2.1 19 68-86 7-25 (175)
296 3crm_A TRNA delta(2)-isopenten 70.0 2.6 8.7E-05 38.4 3.0 17 70-86 6-22 (323)
297 1ly1_A Polynucleotide kinase; 70.0 2.1 7.3E-05 34.5 2.3 16 71-86 4-19 (181)
298 1rj9_A FTSY, signal recognitio 69.9 4.7 0.00016 36.2 4.7 17 69-85 102-118 (304)
299 1u94_A RECA protein, recombina 69.1 5.8 0.0002 36.6 5.3 48 58-109 50-99 (356)
300 3a00_A Guanylate kinase, GMP k 68.8 2.6 8.8E-05 34.6 2.6 16 70-85 2-17 (186)
301 1zd8_A GTP:AMP phosphotransfer 68.8 2 7E-05 36.5 2.0 19 68-86 6-24 (227)
302 3b9q_A Chloroplast SRP recepto 68.5 5.1 0.00017 36.0 4.7 19 68-86 99-117 (302)
303 1g8p_A Magnesium-chelatase 38 68.3 1.5 5.2E-05 39.9 1.1 18 69-86 45-62 (350)
304 3c8u_A Fructokinase; YP_612366 68.2 3.5 0.00012 34.5 3.3 19 67-85 20-38 (208)
305 3d3q_A TRNA delta(2)-isopenten 68.1 2.9 9.9E-05 38.3 2.9 16 71-86 9-24 (340)
306 4gp7_A Metallophosphoesterase; 67.8 2.3 7.9E-05 34.5 2.0 19 68-86 8-26 (171)
307 2px0_A Flagellar biosynthesis 67.8 5.4 0.00018 35.7 4.6 21 68-88 104-124 (296)
308 3nhv_A BH2092 protein; alpha-b 67.6 4.9 0.00017 31.6 3.9 37 332-371 72-110 (144)
309 3pxg_A Negative regulator of g 67.6 1.9 6.5E-05 41.4 1.7 26 68-94 200-225 (468)
310 4a74_A DNA repair and recombin 67.6 3 0.0001 35.2 2.8 28 59-86 14-42 (231)
311 2xau_A PRE-mRNA-splicing facto 67.5 33 0.0011 35.1 11.0 78 101-203 303-393 (773)
312 2x8a_A Nuclear valosin-contain 67.4 3.1 0.00011 36.8 2.9 55 21-85 6-60 (274)
313 1zuh_A Shikimate kinase; alpha 67.2 2.6 8.9E-05 33.8 2.2 18 70-87 8-25 (168)
314 3b85_A Phosphate starvation-in 67.1 5.7 0.00019 33.5 4.4 34 48-85 5-38 (208)
315 2z0m_A 337AA long hypothetical 66.4 15 0.0005 32.6 7.4 74 100-206 219-293 (337)
316 1s96_A Guanylate kinase, GMP k 66.2 3 0.0001 35.5 2.5 18 68-85 15-32 (219)
317 2yjt_D ATP-dependent RNA helic 69.7 1.2 4.2E-05 36.1 0.0 75 102-205 31-106 (170)
318 1gmx_A GLPE protein; transfera 66.1 5 0.00017 29.6 3.5 36 332-370 58-94 (108)
319 1tev_A UMP-CMP kinase; ploop, 66.0 2.6 8.7E-05 34.5 2.0 18 69-86 3-20 (196)
320 3uie_A Adenylyl-sulfate kinase 66.0 2.6 9E-05 35.0 2.1 19 68-86 24-42 (200)
321 1aky_A Adenylate kinase; ATP:A 66.0 3 0.0001 35.1 2.5 19 68-86 3-21 (220)
322 2c95_A Adenylate kinase 1; tra 65.9 2.8 9.5E-05 34.4 2.2 19 68-86 8-26 (196)
323 3bfn_A Kinesin-like protein KI 65.8 2.9 9.8E-05 39.1 2.4 36 51-86 75-116 (388)
324 2hhg_A Hypothetical protein RP 65.7 5.7 0.00019 30.7 3.9 36 332-370 86-122 (139)
325 1iy2_A ATP-dependent metallopr 65.7 3.5 0.00012 36.3 2.9 16 70-85 74-89 (278)
326 2pez_A Bifunctional 3'-phospho 65.6 2.8 9.6E-05 34.0 2.1 19 68-86 4-22 (179)
327 3t61_A Gluconokinase; PSI-biol 65.5 2.9 9.8E-05 34.7 2.2 18 69-86 18-35 (202)
328 1zak_A Adenylate kinase; ATP:A 65.4 3.1 0.00011 35.1 2.5 19 68-86 4-22 (222)
329 1znw_A Guanylate kinase, GMP k 65.3 3.2 0.00011 34.7 2.5 18 68-85 19-36 (207)
330 1yks_A Genome polyprotein [con 65.3 14 0.00048 34.9 7.3 67 102-202 178-245 (440)
331 1g41_A Heat shock protein HSLU 64.7 3.6 0.00012 39.2 3.0 18 69-86 50-67 (444)
332 4a14_A Kinesin, kinesin-like p 64.5 2.5 8.4E-05 38.9 1.7 36 51-86 60-101 (344)
333 2r2a_A Uncharacterized protein 64.4 4.7 0.00016 33.8 3.3 17 71-87 7-23 (199)
334 1qxn_A SUD, sulfide dehydrogen 64.3 5.5 0.00019 31.0 3.6 38 331-371 81-119 (137)
335 3dc4_A Kinesin-like protein NO 64.3 2 6.7E-05 39.6 1.0 36 51-86 71-112 (344)
336 2cdn_A Adenylate kinase; phosp 64.3 3.6 0.00012 34.1 2.6 19 68-86 19-37 (201)
337 1g5t_A COB(I)alamin adenosyltr 64.3 8.4 0.00029 32.2 4.8 34 70-107 29-62 (196)
338 3eph_A TRNA isopentenyltransfe 64.1 3.3 0.00011 38.9 2.5 16 71-86 4-19 (409)
339 1e6c_A Shikimate kinase; phosp 64.0 3.6 0.00012 32.9 2.5 17 70-86 3-19 (173)
340 1via_A Shikimate kinase; struc 63.6 3.7 0.00013 33.1 2.5 16 71-86 6-21 (175)
341 2og2_A Putative signal recogni 63.6 7 0.00024 36.1 4.6 19 68-86 156-174 (359)
342 3tbk_A RIG-I helicase domain; 63.6 22 0.00076 34.0 8.6 105 80-203 370-476 (555)
343 3fb4_A Adenylate kinase; psych 63.5 3.2 0.00011 34.8 2.2 16 71-86 2-17 (216)
344 2wwf_A Thymidilate kinase, put 63.5 3.1 0.0001 34.7 2.0 19 68-86 9-27 (212)
345 2yvu_A Probable adenylyl-sulfa 63.4 3.4 0.00012 33.8 2.2 19 68-86 12-30 (186)
346 1goj_A Kinesin, kinesin heavy 63.4 3.3 0.00011 38.2 2.4 36 51-86 57-98 (355)
347 2iyv_A Shikimate kinase, SK; t 63.2 3.9 0.00013 33.2 2.6 17 70-86 3-19 (184)
348 1gvn_B Zeta; postsegregational 62.9 3 0.0001 37.1 2.0 18 69-86 33-50 (287)
349 1tq1_A AT5G66040, senescence-a 62.7 5.4 0.00018 30.6 3.2 36 332-370 82-118 (129)
350 2k0z_A Uncharacterized protein 62.6 8.3 0.00028 28.5 4.1 38 331-371 55-92 (110)
351 2bdt_A BH3686; alpha-beta prot 62.6 3.5 0.00012 33.7 2.2 17 70-86 3-19 (189)
352 2ce7_A Cell division protein F 62.5 4.2 0.00014 39.2 3.0 18 69-86 49-66 (476)
353 3dl0_A Adenylate kinase; phosp 62.5 3.4 0.00012 34.6 2.2 16 71-86 2-17 (216)
354 3lnc_A Guanylate kinase, GMP k 62.3 2.6 9E-05 35.9 1.4 18 68-85 26-43 (231)
355 1nn5_A Similar to deoxythymidy 62.2 3.6 0.00012 34.3 2.2 19 68-86 8-26 (215)
356 2plr_A DTMP kinase, probable t 62.1 3.5 0.00012 34.2 2.1 19 68-86 3-21 (213)
357 1bg2_A Kinesin; motor protein, 62.0 2.9 9.9E-05 38.1 1.7 36 51-86 54-95 (325)
358 3pxi_A Negative regulator of g 62.0 1.5 5.1E-05 44.9 -0.3 16 71-86 523-538 (758)
359 2pt5_A Shikimate kinase, SK; a 62.0 3.8 0.00013 32.7 2.2 16 71-86 2-17 (168)
360 1in4_A RUVB, holliday junction 61.9 4.8 0.00016 36.6 3.2 17 70-86 52-68 (334)
361 3e70_C DPA, signal recognition 61.8 7 0.00024 35.5 4.2 18 68-85 128-145 (328)
362 2yhs_A FTSY, cell division pro 61.7 7.5 0.00026 37.5 4.6 36 68-107 292-327 (503)
363 3lre_A Kinesin-like protein KI 61.6 3.4 0.00012 38.1 2.1 36 51-86 82-123 (355)
364 3nwn_A Kinesin-like protein KI 61.4 2.6 9E-05 38.9 1.3 33 54-86 84-122 (359)
365 3t0q_A AGR253WP; kinesin, alph 61.4 4.3 0.00015 37.3 2.7 35 52-86 64-103 (349)
366 3ilm_A ALR3790 protein; rhodan 61.4 8.8 0.0003 30.0 4.3 37 332-371 56-93 (141)
367 3pxi_A Negative regulator of g 61.3 2.9 9.8E-05 42.8 1.7 26 68-94 200-225 (758)
368 1m7g_A Adenylylsulfate kinase; 61.3 3.8 0.00013 34.3 2.3 19 68-86 24-42 (211)
369 3m6a_A ATP-dependent protease 61.0 6.2 0.00021 38.6 4.0 19 68-86 107-125 (543)
370 1ak2_A Adenylate kinase isoenz 61.0 5.7 0.0002 33.8 3.4 19 68-86 15-33 (233)
371 1nks_A Adenylate kinase; therm 60.8 3.5 0.00012 33.5 1.9 16 71-86 3-18 (194)
372 1cke_A CK, MSSA, protein (cyti 60.8 5.7 0.0002 33.4 3.3 18 69-86 5-22 (227)
373 2vli_A Antibiotic resistance p 60.8 3.2 0.00011 33.6 1.6 18 69-86 5-22 (183)
374 2jtq_A Phage shock protein E; 60.8 10 0.00034 26.4 4.1 37 331-371 40-77 (85)
375 3tif_A Uncharacterized ABC tra 60.7 3.5 0.00012 35.5 1.9 32 195-226 161-192 (235)
376 2bwj_A Adenylate kinase 5; pho 60.7 3.6 0.00012 33.8 1.9 18 69-86 12-29 (199)
377 1f2t_A RAD50 ABC-ATPase; DNA d 60.7 5.8 0.0002 31.4 3.1 15 71-85 25-39 (149)
378 2p5t_B PEZT; postsegregational 60.7 6.6 0.00023 34.0 3.8 19 68-86 31-49 (253)
379 3tqc_A Pantothenate kinase; bi 60.4 9.5 0.00032 34.6 4.8 15 71-85 94-108 (321)
380 2jaq_A Deoxyguanosine kinase; 60.4 4.1 0.00014 33.6 2.2 16 71-86 2-17 (205)
381 2r8r_A Sensor protein; KDPD, P 60.3 9 0.00031 32.8 4.4 22 71-92 8-29 (228)
382 2zfi_A Kinesin-like protein KI 60.2 3.1 0.0001 38.6 1.5 34 53-86 68-107 (366)
383 3kta_A Chromosome segregation 59.8 5.5 0.00019 32.2 2.9 15 71-85 28-42 (182)
384 3asz_A Uridine kinase; cytidin 59.7 3.5 0.00012 34.4 1.7 18 68-85 5-22 (211)
385 4gl2_A Interferon-induced heli 59.6 8.9 0.0003 38.5 5.0 38 101-138 400-439 (699)
386 3d1p_A Putative thiosulfate su 59.5 9.5 0.00032 29.5 4.2 37 332-371 91-128 (139)
387 2vvg_A Kinesin-2; motor protei 59.5 3.4 0.00012 38.0 1.7 36 51-86 66-107 (350)
388 1sxj_A Activator 1 95 kDa subu 59.4 5.1 0.00017 38.9 3.0 17 70-86 78-94 (516)
389 1qf9_A UMP/CMP kinase, protein 59.3 3.8 0.00013 33.3 1.8 17 70-86 7-23 (194)
390 3nwj_A ATSK2; P loop, shikimat 59.2 6.5 0.00022 34.2 3.4 18 69-86 48-65 (250)
391 2r2a_A Uncharacterized protein 59.1 3.1 0.00011 34.9 1.3 14 198-211 88-101 (199)
392 1ukz_A Uridylate kinase; trans 59.0 4.4 0.00015 33.5 2.2 17 70-86 16-32 (203)
393 3a4m_A L-seryl-tRNA(SEC) kinas 59.0 4.2 0.00014 35.5 2.1 18 69-86 4-21 (260)
394 2i3b_A HCR-ntpase, human cance 58.5 7 0.00024 32.3 3.4 17 69-85 1-17 (189)
395 2fsx_A RV0390, COG0607: rhodan 58.5 8.9 0.00031 30.1 3.9 36 332-370 80-116 (148)
396 1ye8_A Protein THEP1, hypothet 58.5 6 0.00021 32.4 2.9 15 71-85 2-16 (178)
397 1htw_A HI0065; nucleotide-bind 57.9 4.8 0.00016 32.3 2.1 18 67-84 31-48 (158)
398 1vht_A Dephospho-COA kinase; s 57.6 4.9 0.00017 33.7 2.3 18 69-86 4-21 (218)
399 2wv9_A Flavivirin protease NS2 57.5 28 0.00095 35.0 8.1 68 101-202 410-478 (673)
400 2jlq_A Serine protease subunit 57.4 25 0.00087 33.2 7.5 67 102-202 189-256 (451)
401 1jjv_A Dephospho-COA kinase; P 57.2 4.9 0.00017 33.3 2.2 16 71-86 4-19 (206)
402 1f9v_A Kinesin-like protein KA 57.1 4.4 0.00015 37.2 2.0 34 53-86 64-102 (347)
403 1vee_A Proline-rich protein fa 57.1 11 0.00039 28.9 4.2 36 332-370 74-110 (134)
404 2z0h_A DTMP kinase, thymidylat 57.0 5 0.00017 32.8 2.2 15 72-86 3-17 (197)
405 2cbz_A Multidrug resistance-as 57.0 4.4 0.00015 34.9 1.9 17 68-84 30-46 (237)
406 2pbr_A DTMP kinase, thymidylat 56.9 5.1 0.00017 32.6 2.2 16 71-86 2-17 (195)
407 1ypw_A Transitional endoplasmi 56.8 5.1 0.00017 41.3 2.6 20 67-86 236-255 (806)
408 1nlf_A Regulatory protein REPA 56.7 3.8 0.00013 36.1 1.5 23 65-87 26-48 (279)
409 3be4_A Adenylate kinase; malar 56.6 4.4 0.00015 34.1 1.8 18 69-86 5-22 (217)
410 1zu4_A FTSY; GTPase, signal re 56.5 12 0.00041 33.8 4.8 19 69-87 105-123 (320)
411 2if2_A Dephospho-COA kinase; a 56.3 4.7 0.00016 33.4 1.9 16 71-86 3-18 (204)
412 2owm_A Nckin3-434, related to 56.2 4.1 0.00014 38.8 1.7 34 53-86 115-154 (443)
413 3aez_A Pantothenate kinase; tr 56.2 20 0.00068 32.2 6.2 20 66-85 87-106 (312)
414 1svm_A Large T antigen; AAA+ f 56.1 9.5 0.00033 35.4 4.1 28 58-85 158-185 (377)
415 1e4v_A Adenylate kinase; trans 56.1 4.5 0.00015 33.9 1.8 16 71-86 2-17 (214)
416 2bbw_A Adenylate kinase 4, AK4 56.0 5.8 0.0002 34.1 2.5 17 69-85 27-43 (246)
417 2v6i_A RNA helicase; membrane, 55.9 17 0.00057 34.3 5.9 33 102-138 172-204 (431)
418 1pzn_A RAD51, DNA repair and r 55.5 10 0.00035 34.7 4.3 24 27-50 35-58 (349)
419 2heh_A KIF2C protein; kinesin, 55.5 4 0.00014 38.1 1.5 36 51-86 111-152 (387)
420 1c9k_A COBU, adenosylcobinamid 55.2 7.2 0.00025 32.1 2.8 45 72-124 2-46 (180)
421 3qf7_A RAD50; ABC-ATPase, ATPa 55.2 5.4 0.00018 36.9 2.3 16 71-86 25-40 (365)
422 4e22_A Cytidylate kinase; P-lo 55.1 7.9 0.00027 33.5 3.3 18 68-85 26-43 (252)
423 1xjc_A MOBB protein homolog; s 55.0 14 0.00047 30.0 4.5 24 71-95 6-29 (169)
424 3lda_A DNA repair protein RAD5 54.8 11 0.00039 35.2 4.5 21 66-86 175-195 (400)
425 3umf_A Adenylate kinase; rossm 54.3 9 0.00031 32.5 3.4 21 68-88 28-48 (217)
426 2xb4_A Adenylate kinase; ATP-b 54.3 5.8 0.0002 33.6 2.2 16 71-86 2-17 (223)
427 3tlx_A Adenylate kinase 2; str 54.2 5.8 0.0002 34.1 2.2 19 68-86 28-46 (243)
428 1sgw_A Putative ABC transporte 54.1 5 0.00017 34.0 1.7 31 195-225 149-179 (214)
429 3eiq_A Eukaryotic initiation f 54.0 22 0.00076 32.6 6.4 75 102-205 281-356 (414)
430 4a2p_A RIG-I, retinoic acid in 53.8 31 0.0011 33.1 7.7 110 78-206 369-480 (556)
431 2ghi_A Transport protein; mult 53.8 5.3 0.00018 35.0 1.9 30 196-225 172-201 (260)
432 1mv5_A LMRA, multidrug resista 53.3 4.9 0.00017 34.7 1.6 25 68-94 27-51 (243)
433 3auy_A DNA double-strand break 52.9 7.5 0.00026 35.9 2.9 16 70-85 26-41 (371)
434 2dhr_A FTSH; AAA+ protein, hex 52.9 7.2 0.00025 37.7 2.8 17 70-86 65-81 (499)
435 2jeo_A Uridine-cytidine kinase 52.5 6.4 0.00022 33.9 2.2 19 68-86 24-42 (245)
436 3qks_A DNA double-strand break 52.2 10 0.00034 31.7 3.3 15 71-85 25-39 (203)
437 1b0u_A Histidine permease; ABC 52.2 5.9 0.0002 34.7 2.0 32 195-226 169-200 (262)
438 2y65_A Kinesin, kinesin heavy 52.0 4.3 0.00015 37.6 1.0 36 51-86 61-102 (365)
439 3tqf_A HPR(Ser) kinase; transf 51.8 7.4 0.00025 32.0 2.3 19 68-86 15-33 (181)
440 2grj_A Dephospho-COA kinase; T 51.7 7 0.00024 32.5 2.2 17 70-86 13-29 (192)
441 4etp_A Kinesin-like protein KA 51.5 10 0.00036 35.5 3.6 20 67-86 137-158 (403)
442 4a2w_A RIG-I, retinoic acid in 51.4 27 0.00094 36.5 7.2 58 79-138 611-668 (936)
443 1uf9_A TT1252 protein; P-loop, 51.3 8.1 0.00028 31.7 2.6 17 70-86 9-25 (203)
444 2pze_A Cystic fibrosis transme 51.2 6.9 0.00024 33.4 2.2 17 68-84 33-49 (229)
445 2v3c_C SRP54, signal recogniti 51.0 15 0.00051 34.8 4.7 18 70-87 100-117 (432)
446 4eaq_A DTMP kinase, thymidylat 50.9 11 0.00037 32.1 3.4 21 66-86 23-43 (229)
447 1vpl_A ABC transporter, ATP-bi 50.9 6.4 0.00022 34.4 2.0 32 195-226 162-193 (256)
448 3o8b_A HCV NS3 protease/helica 50.8 16 0.00056 36.6 5.1 66 101-202 396-461 (666)
449 2olj_A Amino acid ABC transpor 50.8 6.5 0.00022 34.5 2.0 32 195-226 175-206 (263)
450 3sr0_A Adenylate kinase; phosp 50.7 9.2 0.00031 32.1 2.9 18 71-88 2-19 (206)
451 1np6_A Molybdopterin-guanine d 50.7 20 0.00067 29.1 4.8 15 71-85 8-22 (174)
452 3gfo_A Cobalt import ATP-bindi 50.6 6.1 0.00021 35.0 1.8 32 195-226 159-190 (275)
453 2yz2_A Putative ABC transporte 50.3 6.5 0.00022 34.5 1.9 32 195-226 154-185 (266)
454 3gbj_A KIF13B protein; kinesin 50.2 5.1 0.00017 36.9 1.2 34 53-86 71-110 (354)
455 1x88_A Kinesin-like protein KI 50.1 4.6 0.00016 37.3 0.9 36 51-86 65-106 (359)
456 2ff7_A Alpha-hemolysin translo 50.1 6.1 0.00021 34.2 1.7 31 195-225 161-191 (247)
457 2ixe_A Antigen peptide transpo 50.0 6.6 0.00023 34.6 1.9 31 195-225 172-202 (271)
458 2va8_A SSO2462, SKI2-type heli 50.0 61 0.0021 32.5 9.4 77 102-203 253-362 (715)
459 4akg_A Glutathione S-transfera 50.0 6.6 0.00022 45.9 2.3 19 68-86 1266-1284(2695)
460 3nh6_A ATP-binding cassette SU 49.9 6.4 0.00022 35.4 1.8 27 67-95 78-104 (306)
461 1odf_A YGR205W, hypothetical 3 49.7 7.6 0.00026 34.6 2.3 18 69-86 31-48 (290)
462 2rep_A Kinesin-like protein KI 49.7 5.5 0.00019 37.0 1.4 36 51-86 93-133 (376)
463 1r6b_X CLPA protein; AAA+, N-t 49.7 6.5 0.00022 40.1 2.0 16 71-86 490-505 (758)
464 2zu0_C Probable ATP-dependent 49.7 7.6 0.00026 34.1 2.3 30 196-225 181-210 (267)
465 2vp4_A Deoxynucleoside kinase; 49.7 8.4 0.00029 32.7 2.5 18 68-85 19-36 (230)
466 3cmw_A Protein RECA, recombina 49.7 17 0.00056 40.7 5.3 49 58-110 21-71 (1706)
467 1nij_A Hypothetical protein YJ 49.5 12 0.0004 33.7 3.6 15 71-85 6-20 (318)
468 2pcj_A ABC transporter, lipopr 49.4 6.7 0.00023 33.4 1.8 31 195-225 156-186 (224)
469 1rz3_A Hypothetical protein rb 49.3 7.1 0.00024 32.4 1.9 19 68-86 21-39 (201)
470 3iuy_A Probable ATP-dependent 49.2 20 0.00069 29.9 4.9 43 331-373 93-135 (228)
471 3b6u_A Kinesin-like protein KI 49.2 4.4 0.00015 37.6 0.7 36 51-86 78-119 (372)
472 3dmq_A RNA polymerase-associat 49.0 30 0.001 36.4 7.0 80 100-207 502-584 (968)
473 1g6h_A High-affinity branched- 49.0 7.6 0.00026 33.8 2.1 31 196-226 170-200 (257)
474 4a2q_A RIG-I, retinoic acid in 48.9 43 0.0015 34.2 8.1 110 78-206 610-721 (797)
475 2j37_W Signal recognition part 48.8 1.1E+02 0.0037 29.5 10.4 36 70-109 102-137 (504)
476 2oxc_A Probable ATP-dependent 48.7 18 0.00061 30.4 4.5 42 331-372 91-134 (230)
477 3oiy_A Reverse gyrase helicase 48.5 17 0.0006 33.6 4.7 43 331-373 63-105 (414)
478 2wbe_C Bipolar kinesin KRP-130 48.5 4.9 0.00017 37.3 0.8 35 52-86 78-118 (373)
479 2qm8_A GTPase/ATPase; G protei 48.4 24 0.00082 32.0 5.5 29 57-85 43-71 (337)
480 2fsf_A Preprotein translocase 48.3 32 0.0011 35.4 6.8 34 102-139 442-475 (853)
481 1ji0_A ABC transporter; ATP bi 48.1 8 0.00028 33.3 2.1 32 195-226 155-186 (240)
482 1r6b_X CLPA protein; AAA+, N-t 47.9 8 0.00027 39.4 2.4 26 68-94 206-231 (758)
483 1uj2_A Uridine-cytidine kinase 47.7 8.4 0.00029 33.2 2.2 16 71-86 24-39 (252)
484 1ltq_A Polynucleotide kinase; 47.7 8.4 0.00029 34.0 2.3 16 71-86 4-19 (301)
485 4f67_A UPF0176 protein LPG2838 47.7 20 0.00069 31.4 4.7 42 327-371 176-218 (265)
486 4g1u_C Hemin import ATP-bindin 47.6 9.3 0.00032 33.5 2.5 29 197-225 165-193 (266)
487 3l0o_A Transcription terminati 47.4 32 0.0011 32.1 6.1 36 50-86 157-192 (427)
488 1qvr_A CLPB protein; coiled co 47.3 6.9 0.00024 40.6 1.8 16 71-86 590-605 (854)
489 3u06_A Protein claret segregat 47.3 12 0.00042 35.1 3.4 19 68-86 136-156 (412)
490 2f1r_A Molybdopterin-guanine d 47.2 6 0.00021 32.2 1.1 15 71-85 4-18 (171)
491 2nr8_A Kinesin-like protein KI 46.9 5.1 0.00017 37.0 0.7 34 53-86 82-121 (358)
492 2qi9_C Vitamin B12 import ATP- 46.9 8.7 0.0003 33.3 2.2 27 200-226 154-180 (249)
493 2ihy_A ABC transporter, ATP-bi 46.9 6.7 0.00023 34.7 1.4 30 196-225 178-207 (279)
494 4edh_A DTMP kinase, thymidylat 46.6 8.8 0.0003 32.4 2.1 19 68-86 5-23 (213)
495 3h1t_A Type I site-specific re 46.4 86 0.0029 30.5 9.6 82 100-207 438-527 (590)
496 2d2e_A SUFC protein; ABC-ATPas 46.4 8.8 0.0003 33.2 2.1 30 196-225 160-189 (250)
497 1q3t_A Cytidylate kinase; nucl 46.3 13 0.00046 31.5 3.3 19 68-86 15-33 (236)
498 3ake_A Cytidylate kinase; CMP 46.3 9.4 0.00032 31.4 2.2 16 71-86 4-19 (208)
499 2nq2_C Hypothetical ABC transp 46.2 8.9 0.0003 33.3 2.1 32 195-226 144-175 (253)
500 2f6r_A COA synthase, bifunctio 45.7 8.4 0.00029 34.0 1.9 16 71-86 77-92 (281)
No 1
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=100.00 E-value=1e-42 Score=339.74 Aligned_cols=287 Identities=23% Similarity=0.329 Sum_probs=248.0
Q ss_pred CCCCccCccccCCCCCCCCCCHHHHHHHHhCCCCCccHhhHHHHHHhhCCCCCCCCEEEECCCCCchHHHhHHHHHHHhh
Q 017196 16 RSPVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLS 95 (375)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~l~~~i~~~l~~~g~~~~~~~Q~~~~~~~~~~~~~~~~~ii~a~TGsGKTl~~~l~il~~l~ 95 (375)
..|.+..+|++++ +++.+.+++.+.||..|+|+|.++++.++ .|+|++++||||||||++|++|++..+.
T Consensus 50 ~~p~~~~~f~~~~------l~~~l~~~l~~~g~~~pt~iQ~~ai~~i~----~g~d~i~~a~TGsGKT~a~~lpil~~l~ 119 (434)
T 2db3_A 50 DVPQPIQHFTSAD------LRDIIIDNVNKSGYKIPTPIQKCSIPVIS----SGRDLMACAQTGSGKTAAFLLPILSKLL 119 (434)
T ss_dssp SCCCCCCCGGGSC------CCHHHHHHHHHTTCCSCCHHHHHHHHHHH----TTCCEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCCCCcCChhhcC------CCHHHHHHHHHcCCCCCCHHHHHHHHHHh----cCCCEEEECCCCCCchHHHHHHHHHHHH
Confidence 3477888999999 99999999999999999999999999887 6899999999999999999999999987
Q ss_pred hcc----cCCceEEEEcccHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcC
Q 017196 96 NRA----VRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQS 171 (375)
Q Consensus 96 ~~~----~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (375)
... ..++++||++||++|+.|+++.+++++...++++..++|+.....+.. .+..
T Consensus 120 ~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~---------------------~l~~ 178 (434)
T 2db3_A 120 EDPHELELGRPQVVIVSPTRELAIQIFNEARKFAFESYLKIGIVYGGTSFRHQNE---------------------CITR 178 (434)
T ss_dssp HSCCCCCTTCCSEEEECSSHHHHHHHHHHHHHHTTTSSCCCCEECTTSCHHHHHH---------------------HHTT
T ss_pred hcccccccCCccEEEEecCHHHHHHHHHHHHHHhccCCcEEEEEECCCCHHHHHH---------------------Hhhc
Confidence 643 236789999999999999999999999888899999999987655532 4567
Q ss_pred CCcEEEeCcHHHHHHHhhcCCCCCCCccEEEEecchhhhhHhHHhHHHHHHHhhhccccccccccccccccccccccccc
Q 017196 172 AVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIR 251 (375)
Q Consensus 172 ~~~IiV~Tp~~l~~~l~~~~~~~~~~~~~vIiDE~h~l~~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (375)
+++|+|+||++|.+++.+ ..+.++++++||+||||++++.+|...+..++..+...
T Consensus 179 ~~~Ivv~Tp~~l~~~l~~-~~~~l~~~~~lVlDEah~~~~~gf~~~~~~i~~~~~~~----------------------- 234 (434)
T 2db3_A 179 GCHVVIATPGRLLDFVDR-TFITFEDTRFVVLDEADRMLDMGFSEDMRRIMTHVTMR----------------------- 234 (434)
T ss_dssp CCSEEEECHHHHHHHHHT-TSCCCTTCCEEEEETHHHHTSTTTHHHHHHHHHCTTSC-----------------------
T ss_pred CCCEEEEChHHHHHHHHh-CCcccccCCeEEEccHhhhhccCcHHHHHHHHHhcCCC-----------------------
Confidence 889999999999999987 45778999999999999999999988888888775321
Q ss_pred ccccccCCCCCCCCceeEEEEEEecCCCchhhhccccCCCeEEecCCccccCcccceeEEEeccCCCcHHHHHHHHHhcC
Q 017196 252 RCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLG 331 (375)
Q Consensus 252 ~~~~~~~~~~~~~~~~q~i~~SATl~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~ 331 (375)
+..|+++||||++..+..+...++.++..+.+.... .....+.+.+..+....|...+.+++....
T Consensus 235 -------------~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~-~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~ 300 (434)
T 2db3_A 235 -------------PEHQTLMFSATFPEEIQRMAGEFLKNYVFVAIGIVG-GACSDVKQTIYEVNKYAKRSKLIEILSEQA 300 (434)
T ss_dssp -------------SSCEEEEEESCCCHHHHHHHHTTCSSCEEEEESSTT-CCCTTEEEEEEECCGGGHHHHHHHHHHHCC
T ss_pred -------------CCceEEEEeccCCHHHHHHHHHhccCCEEEEecccc-ccccccceEEEEeCcHHHHHHHHHHHHhCC
Confidence 156899999999998899999999999888776544 234567777778888889999999998876
Q ss_pred CCeEEEEcCChhhHHHHHHHHHHhcCCcceEEeccccccccccC
Q 017196 332 EEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRR 375 (375)
Q Consensus 332 ~~k~lIF~~s~~~a~~l~~~L~~~g~~~~~~~~lh~~~~~~~R~ 375 (375)
.+ +||||+++++|+.+++.|...| +.+..+||+|++.+|+
T Consensus 301 ~~-~lVF~~t~~~a~~l~~~L~~~~---~~~~~lhg~~~~~~R~ 340 (434)
T 2db3_A 301 DG-TIVFVETKRGADFLASFLSEKE---FPTTSIHGDRLQSQRE 340 (434)
T ss_dssp TT-EEEECSSHHHHHHHHHHHHHTT---CCEEEESTTSCHHHHH
T ss_pred CC-EEEEEeCcHHHHHHHHHHHhCC---CCEEEEeCCCCHHHHH
Confidence 54 9999999999999999999654 8999999999998873
No 2
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=100.00 E-value=6.4e-41 Score=324.84 Aligned_cols=289 Identities=25% Similarity=0.356 Sum_probs=242.2
Q ss_pred CCCCccCccccCCCCCCCCCCHHHHHHHHhCCCCCccHhhHHHHHHhhCCCCCCCCEEEECCCCCchHHHhHHHHHHHhh
Q 017196 16 RSPVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLS 95 (375)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~l~~~i~~~l~~~g~~~~~~~Q~~~~~~~~~~~~~~~~~ii~a~TGsGKTl~~~l~il~~l~ 95 (375)
..|.+..+|++++ +++.+.+++...||..|+|+|.++++.++ .|+|+++++|||+|||++|++|++..+.
T Consensus 9 ~~p~~~~~f~~~~------l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~----~~~~~lv~a~TGsGKT~~~~~~~l~~~~ 78 (417)
T 2i4i_A 9 NCPPHIESFSDVE------MGEIIMGNIELTRYTRPTPVQKHAIPIIK----EKRDLMACAQTGSGKTAAFLLPILSQIY 78 (417)
T ss_dssp TCCCCCSSGGGSC------CCHHHHHHHHHHTCCSCCHHHHHHHHHHH----TTCCEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred cCCcccCCHhhCC------CCHHHHHHHHHCCCCCCCHHHHHHHHHHc----cCCCEEEEcCCCCHHHHHHHHHHHHHHH
Confidence 3578888999999 99999999999999999999999999877 6899999999999999999999999886
Q ss_pred hccc-----------------CCceEEEEcccHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHHhhcCccccCc
Q 017196 96 NRAV-----------------RCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGI 158 (375)
Q Consensus 96 ~~~~-----------------~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (375)
.... .++++||++||++|+.|+++.+++++...++++..++|+........
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~------------ 146 (417)
T 2i4i_A 79 SDGPGEALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIR------------ 146 (417)
T ss_dssp HHCCCHHHHHHHHCBTTBSCSBCCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCHHHHHH------------
T ss_pred hccccchhhccccccccccccCCccEEEECCcHHHHHHHHHHHHHHhCcCCceEEEEECCCCHHHHHH------------
Confidence 5421 23679999999999999999999998888899999999987655533
Q ss_pred cCCchhHHHhhcCCCcEEEeCcHHHHHHHhhcCCCCCCCccEEEEecchhhhhHhHHhHHHHHHHhhhcccccccccccc
Q 017196 159 CYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDAST 238 (375)
Q Consensus 159 ~~~~~~~~~~~~~~~~IiV~Tp~~l~~~l~~~~~~~~~~~~~vIiDE~h~l~~~~~~~~l~~i~~~l~~~~~~~~~~~~~ 238 (375)
.+..+++|+|+||++|.+.+.. ..+.+..+++||+||||++.+.+|...+..++........
T Consensus 147 ---------~~~~~~~I~v~Tp~~l~~~l~~-~~~~~~~~~~iViDEah~~~~~~~~~~~~~i~~~~~~~~~-------- 208 (417)
T 2i4i_A 147 ---------DLERGCHLLVATPGRLVDMMER-GKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPK-------- 208 (417)
T ss_dssp ---------HHTTCCSEEEECHHHHHHHHHT-TSBCCTTCCEEEESSHHHHHHTTCHHHHHHHHTSSSCCCB--------
T ss_pred ---------HhhCCCCEEEEChHHHHHHHHc-CCcChhhCcEEEEEChhHhhccCcHHHHHHHHHhccCCCc--------
Confidence 4556789999999999999987 4577899999999999999988888877777764322111
Q ss_pred cccccccccccccccccccCCCCCCCCceeEEEEEEecCCCchhhhccccCCCeEEecCCccccCcccceeEEEeccCCC
Q 017196 239 FLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKL 318 (375)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~ 318 (375)
...|++++|||++..+..+...++.++..+...... .....+.+.+..+....
T Consensus 209 --------------------------~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~ 261 (417)
T 2i4i_A 209 --------------------------GVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVG-STSENITQKVVWVEESD 261 (417)
T ss_dssp --------------------------TTBEEEEEESCCCHHHHHHHHHHCSSCEEEEEC-----CCSSEEEEEEECCGGG
T ss_pred --------------------------CCcEEEEEEEeCCHHHHHHHHHHcCCCEEEEeCCCC-CCccCceEEEEEeccHh
Confidence 156899999999988888888888888777665443 34456777777888888
Q ss_pred cHHHHHHHHHhc-CCCeEEEEcCChhhHHHHHHHHHHhcCCcceEEecccccccccc
Q 017196 319 KPLYLVALLQSL-GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVR 374 (375)
Q Consensus 319 k~~~l~~ll~~~-~~~k~lIF~~s~~~a~~l~~~L~~~g~~~~~~~~lh~~~~~~~R 374 (375)
+...+.++++.. ..+++||||+++++|+.+++.|...| +.+..+||+|++++|
T Consensus 262 ~~~~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~---~~~~~~h~~~~~~~r 315 (417)
T 2i4i_A 262 KRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEG---YACTSIHGDRSQRDR 315 (417)
T ss_dssp HHHHHHHHHHTCCTTCEEEEECSSHHHHHHHHHHHHHTT---CCEEEECTTSCHHHH
T ss_pred HHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHHCC---CCeeEecCCCCHHHH
Confidence 999999999987 46799999999999999999999654 899999999998887
No 3
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=100.00 E-value=6.7e-40 Score=317.23 Aligned_cols=283 Identities=21% Similarity=0.336 Sum_probs=239.0
Q ss_pred CCccCccccCCCCCCCCCCHHHHHHHHhCCCCCccHhhHHHHHHhhCCCCCCCCEEEECCCCCchHHHhHHHHHHHhhhc
Q 017196 18 PVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNR 97 (375)
Q Consensus 18 ~~~~~~~~~~~~~~~~~l~~~i~~~l~~~g~~~~~~~Q~~~~~~~~~~~~~~~~~ii~a~TGsGKTl~~~l~il~~l~~~ 97 (375)
+....+|++++ +++.+.+++.+.||..|+++|.++++.++ .|+|+++++|||+|||++|++|+++.+...
T Consensus 33 ~~~~~~f~~~~------l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~----~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~ 102 (410)
T 2j0s_A 33 VDVTPTFDTMG------LREDLLRGIYAYGFEKPSAIQQRAIKQII----KGRDVIAQSQSGTGKTATFSISVLQCLDIQ 102 (410)
T ss_dssp CCCCCSGGGGC------CCHHHHHHHHHHTCCSCCHHHHHHHHHHH----TTCCEEEECCTTSSHHHHHHHHHHHTCCTT
T ss_pred ccCCCCHhhcC------CCHHHHHHHHHcCCCCCCHHHHHHHHHHh----CCCCEEEECCCCCCchHHHHHHHHHHHhhc
Confidence 34566888888 99999999999999999999999999888 588999999999999999999999887643
Q ss_pred ccCCceEEEEcccHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcCCCcEEE
Q 017196 98 AVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILV 177 (375)
Q Consensus 98 ~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiV 177 (375)
..+.++||++||++|+.|+++.+++++...++.+..++|+........ .+..+++|+|
T Consensus 103 -~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---------------------~~~~~~~ivv 160 (410)
T 2j0s_A 103 -VRETQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIR---------------------KLDYGQHVVA 160 (410)
T ss_dssp -SCSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECTTSCHHHHHH---------------------HHHHCCSEEE
T ss_pred -cCCceEEEEcCcHHHHHHHHHHHHHHhccCCeEEEEEECCCCHHHHHH---------------------HhhcCCCEEE
Confidence 245689999999999999999999999888999999999887655533 3445679999
Q ss_pred eCcHHHHHHHhhcCCCCCCCccEEEEecchhhhhHhHHhHHHHHHHhhhccccccccccccccccccccccccccccccc
Q 017196 178 ATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVER 257 (375)
Q Consensus 178 ~Tp~~l~~~l~~~~~~~~~~~~~vIiDE~h~l~~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (375)
+||+++.+.+.+ ..+.+..+++||+||||++.+.++...+..++..++.
T Consensus 161 ~Tp~~l~~~l~~-~~~~~~~~~~vViDEah~~~~~~~~~~~~~i~~~~~~------------------------------ 209 (410)
T 2j0s_A 161 GTPGRVFDMIRR-RSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPP------------------------------ 209 (410)
T ss_dssp ECHHHHHHHHHT-TSSCCTTCCEEEEETHHHHTSTTTHHHHHHHHTTSCT------------------------------
T ss_pred cCHHHHHHHHHh-CCccHhheeEEEEccHHHHHhhhhHHHHHHHHHhCcc------------------------------
Confidence 999999999987 4577889999999999999988888777777766544
Q ss_pred CCCCCCCCceeEEEEEEecCCCchhhhccccCCCeEEecCCccccCcccceeEEEeccCCC-cHHHHHHHHHhcCCCeEE
Q 017196 258 GFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKL-KPLYLVALLQSLGEEKCI 336 (375)
Q Consensus 258 ~~~~~~~~~~q~i~~SATl~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~-k~~~l~~ll~~~~~~k~l 336 (375)
..|++++|||++.....+...++.++..+....... ....+.+.+..+.... +...+.++++....+++|
T Consensus 210 --------~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~k~~~l~~~~~~~~~~~~l 280 (410)
T 2j0s_A 210 --------ATQVVLISATLPHEILEMTNKFMTDPIRILVKRDEL-TLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAV 280 (410)
T ss_dssp --------TCEEEEEESCCCHHHHTTGGGTCSSCEEECCCGGGC-SCTTEEEEEEEESSTTHHHHHHHHHHHHHTSSEEE
T ss_pred --------CceEEEEEcCCCHHHHHHHHHHcCCCEEEEecCccc-cCCCceEEEEEeCcHHhHHHHHHHHHHhcCCCcEE
Confidence 568999999999888888888888888777655442 3345666666665544 888899999888888999
Q ss_pred EEcCChhhHHHHHHHHHHhcCCcceEEeccccccccccC
Q 017196 337 VFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRR 375 (375)
Q Consensus 337 IF~~s~~~a~~l~~~L~~~g~~~~~~~~lh~~~~~~~R~ 375 (375)
|||+++++|+.+++.|...| +.+..+||+|++.+|+
T Consensus 281 Vf~~~~~~~~~l~~~L~~~~---~~~~~~h~~~~~~~r~ 316 (410)
T 2j0s_A 281 IFCNTKRKVDWLTEKMREAN---FTVSSMHGDMPQKERE 316 (410)
T ss_dssp EECSSHHHHHHHHHHHHHTT---CCCEEECTTSCHHHHH
T ss_pred EEEcCHHHHHHHHHHHHhCC---CceEEeeCCCCHHHHH
Confidence 99999999999999999654 8899999999998873
No 4
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=100.00 E-value=1.7e-38 Score=305.07 Aligned_cols=280 Identities=23% Similarity=0.317 Sum_probs=236.2
Q ss_pred CccccCCCCCCCCCCHHHHHHHHhCCCCCccHhhHHHHHHhhCCCCCCCCEEEECCCCCchHHHhHHHHHHHhhhcccCC
Q 017196 22 SLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRC 101 (375)
Q Consensus 22 ~~~~~~~~~~~~~l~~~i~~~l~~~g~~~~~~~Q~~~~~~~~~~~~~~~~~ii~a~TGsGKTl~~~l~il~~l~~~~~~~ 101 (375)
+.|++++ +++.+.++|.++||..|+|+|.++++.++ .++++++.+|||+|||++|++|++..+.... .+
T Consensus 8 ~~f~~~~------l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~----~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~~-~~ 76 (391)
T 1xti_A 8 SGFRDFL------LKPELLRAIVDCGFEHPSEVQHECIPQAI----LGMDVLCQAKSGMGKTAVFVLATLQQLEPVT-GQ 76 (391)
T ss_dssp -CGGGGC------CCHHHHHHHHHHSCCSCCHHHHHHHHHHT----TTCCEEEECSSCSSHHHHHHHHHHHHCCCCT-TC
T ss_pred CChhhcC------CCHHHHHHHHHCCCCCCCHHHHHHHHHHh----cCCcEEEECCCCCcHHHHHHHHHHHhhcccC-CC
Confidence 5788888 99999999999999999999999998887 5789999999999999999999998886542 44
Q ss_pred ceEEEEcccHHHHHHHHHHHHHhcccc-CceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcCCCcEEEeCc
Q 017196 102 LRALVVLPTRDLALQVKDVFAAIAPAV-GLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATP 180 (375)
Q Consensus 102 ~~~lil~Pt~~L~~Q~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiV~Tp 180 (375)
.++||++||++|+.|+.+.++++.... ++++..++|+.........+ ....++|+|+||
T Consensus 77 ~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~--------------------~~~~~~iiv~T~ 136 (391)
T 1xti_A 77 VSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVL--------------------KKNCPHIVVGTP 136 (391)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHHTTTCTTCCEEEECTTSCHHHHHHHH--------------------HHSCCSEEEECH
T ss_pred eeEEEECCCHHHHHHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHHHHH--------------------hcCCCCEEEECH
Confidence 589999999999999999999998766 78999999988765543211 123479999999
Q ss_pred HHHHHHHhhcCCCCCCCccEEEEecchhhhh-HhHHhHHHHHHHhhhcccccccccccccccccccccccccccccccCC
Q 017196 181 GRLMDHINATRGFTLEHLCYLVVDETDRLLR-EAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGF 259 (375)
Q Consensus 181 ~~l~~~l~~~~~~~~~~~~~vIiDE~h~l~~-~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (375)
+++...+.+ ..+.+..+++||+||||++.+ .++...+..++...+.
T Consensus 137 ~~l~~~~~~-~~~~~~~~~~vViDEaH~~~~~~~~~~~~~~~~~~~~~-------------------------------- 183 (391)
T 1xti_A 137 GRILALARN-KSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPH-------------------------------- 183 (391)
T ss_dssp HHHHHHHHT-TSSCCTTCSEEEECSHHHHTSSHHHHHHHHHHHHTSCS--------------------------------
T ss_pred HHHHHHHHc-CCccccccCEEEEeCHHHHhhccchHHHHHHHHhhCCC--------------------------------
Confidence 999998887 456789999999999999987 4666666666655543
Q ss_pred CCCCCCceeEEEEEEecCCCchhhhccccCCCeEEecCCccccCcccceeEEEeccCCCcHHHHHHHHHhcCCCeEEEEc
Q 017196 260 KDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFT 339 (375)
Q Consensus 260 ~~~~~~~~q~i~~SATl~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~k~lIF~ 339 (375)
..|++++|||++.....+...++.++..+............+.+.+..+....+...+.++++....+++||||
T Consensus 184 ------~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~lvf~ 257 (391)
T 1xti_A 184 ------EKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFV 257 (391)
T ss_dssp ------SSEEEEEESSCCSTHHHHHHHHCSSCEEEECCCCCCCCCTTCEEEEEECCGGGHHHHHHHHHHHSCCSEEEEEC
T ss_pred ------CceEEEEEeeCCHHHHHHHHHHcCCCeEEEecCccccCcccceEEEEEcCchhHHHHHHHHHHhcCCCcEEEEe
Confidence 56899999999999888888888888887766554444556777888888888999999999988888999999
Q ss_pred CChhhHHHHHHHHHHhcCCcceEEecccccccccc
Q 017196 340 SSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVR 374 (375)
Q Consensus 340 ~s~~~a~~l~~~L~~~g~~~~~~~~lh~~~~~~~R 374 (375)
+++++|+.+++.|...| +.+..+||+|+..+|
T Consensus 258 ~~~~~~~~l~~~L~~~~---~~~~~~~~~~~~~~r 289 (391)
T 1xti_A 258 KSVQRCIALAQLLVEQN---FPAIAIHRGMPQEER 289 (391)
T ss_dssp SCHHHHHHHHHHHHHTT---CCEEEECTTSCHHHH
T ss_pred CcHHHHHHHHHHHHhCC---CcEEEEeCCCCHHHH
Confidence 99999999999999654 899999999998887
No 5
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=100.00 E-value=1.5e-38 Score=306.64 Aligned_cols=279 Identities=24% Similarity=0.398 Sum_probs=236.1
Q ss_pred ccCccccCCCCCCCCCCHHHHHHHHhCCCCCccHhhHHHHHHhhCCCCCCCCEEEECCCCCchHHHhHHHHHHHhhhccc
Q 017196 20 DVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAV 99 (375)
Q Consensus 20 ~~~~~~~~~~~~~~~l~~~i~~~l~~~g~~~~~~~Q~~~~~~~~~~~~~~~~~ii~a~TGsGKTl~~~l~il~~l~~~~~ 99 (375)
...+|++++ +++.+.+++.+.||.+|+++|.++++.++ .++++++.+|||+|||++|++|++..+... .
T Consensus 19 ~~~~f~~~~------l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~----~~~~~li~a~TGsGKT~~~~~~~~~~~~~~-~ 87 (400)
T 1s2m_A 19 KGNTFEDFY------LKRELLMGIFEAGFEKPSPIQEEAIPVAI----TGRDILARAKNGTGKTAAFVIPTLEKVKPK-L 87 (400)
T ss_dssp --CCGGGGC------CCHHHHHHHHHTTCCSCCHHHHHHHHHHH----HTCCEEEECCTTSCHHHHHHHHHHHHCCTT-S
T ss_pred ccCChhhcC------CCHHHHHHHHHCCCCCCCHHHHHHHHHHh----cCCCEEEECCCCcHHHHHHHHHHHHHHhhc-c
Confidence 446799999 99999999999999999999999999887 578999999999999999999999988654 2
Q ss_pred CCceEEEEcccHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcCCCcEEEeC
Q 017196 100 RCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVAT 179 (375)
Q Consensus 100 ~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiV~T 179 (375)
.+.++||++||++|+.|+++.+++++...++++..++|+........ .+..+++|+|+|
T Consensus 88 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---------------------~~~~~~~Ivv~T 146 (400)
T 1s2m_A 88 NKIQALIMVPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDIL---------------------RLNETVHILVGT 146 (400)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECSSSCHHHHHH---------------------HTTSCCSEEEEC
T ss_pred CCccEEEEcCCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHH---------------------HhcCCCCEEEEc
Confidence 44589999999999999999999999888899999999877655432 345678999999
Q ss_pred cHHHHHHHhhcCCCCCCCccEEEEecchhhhhHhHHhHHHHHHHhhhcccccccccccccccccccccccccccccccCC
Q 017196 180 PGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGF 259 (375)
Q Consensus 180 p~~l~~~l~~~~~~~~~~~~~vIiDE~h~l~~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (375)
|+++.+.+.+ ....+.++++||+||||++.+.++...+..+...++.
T Consensus 147 ~~~l~~~~~~-~~~~~~~~~~vIiDEaH~~~~~~~~~~~~~i~~~~~~-------------------------------- 193 (400)
T 1s2m_A 147 PGRVLDLASR-KVADLSDCSLFIMDEADKMLSRDFKTIIEQILSFLPP-------------------------------- 193 (400)
T ss_dssp HHHHHHHHHT-TCSCCTTCCEEEEESHHHHSSHHHHHHHHHHHTTSCS--------------------------------
T ss_pred hHHHHHHHHh-CCcccccCCEEEEeCchHhhhhchHHHHHHHHHhCCc--------------------------------
Confidence 9999998877 4567889999999999999988888877777766544
Q ss_pred CCCCCCceeEEEEEEecCCCchhhhccccCCCeEEecCCccccCcccceeEEEeccCCCcHHHHHHHHHhcCCCeEEEEc
Q 017196 260 KDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFT 339 (375)
Q Consensus 260 ~~~~~~~~q~i~~SATl~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~k~lIF~ 339 (375)
..|++++|||++.........++..+..+..... .....+.+++..+....+...+..++.....+++||||
T Consensus 194 ------~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~k~~~l~~~~~~~~~~~~lVf~ 265 (400)
T 1s2m_A 194 ------THQSLLFSATFPLTVKEFMVKHLHKPYEINLMEE--LTLKGITQYYAFVEERQKLHCLNTLFSKLQINQAIIFC 265 (400)
T ss_dssp ------SCEEEEEESCCCHHHHHHHHHHCSSCEEESCCSS--CBCTTEEEEEEECCGGGHHHHHHHHHHHSCCSEEEEEC
T ss_pred ------CceEEEEEecCCHHHHHHHHHHcCCCeEEEeccc--cccCCceeEEEEechhhHHHHHHHHHhhcCCCcEEEEE
Confidence 5689999999998877777777777766654433 23356677777777788888999999988888999999
Q ss_pred CChhhHHHHHHHHHHhcCCcceEEecccccccccc
Q 017196 340 SSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVR 374 (375)
Q Consensus 340 ~s~~~a~~l~~~L~~~g~~~~~~~~lh~~~~~~~R 374 (375)
+++++|+.+++.|...| +.+..+||+|+..+|
T Consensus 266 ~~~~~~~~l~~~L~~~~---~~~~~~~~~~~~~~r 297 (400)
T 1s2m_A 266 NSTNRVELLAKKITDLG---YSCYYSHARMKQQER 297 (400)
T ss_dssp SSHHHHHHHHHHHHHHT---CCEEEECTTSCHHHH
T ss_pred ecHHHHHHHHHHHHhcC---CCeEEecCCCCHHHH
Confidence 99999999999999655 889999999998887
No 6
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=100.00 E-value=1.7e-38 Score=307.42 Aligned_cols=282 Identities=23% Similarity=0.341 Sum_probs=234.1
Q ss_pred CccCccccCCCCCCCCCCHHHHHHHHhCCCCCccHhhHHHHHHhhCCCCCCCCEEEECCCCCchHHHhHHHHHHHhhhcc
Q 017196 19 VDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRA 98 (375)
Q Consensus 19 ~~~~~~~~~~~~~~~~l~~~i~~~l~~~g~~~~~~~Q~~~~~~~~~~~~~~~~~ii~a~TGsGKTl~~~l~il~~l~~~~ 98 (375)
....+|++++ +++.+.+.+.+.|+..|+++|.++++.++ .|+++++.+|||+|||++|++++++.+....
T Consensus 37 ~~~~~f~~~~------l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~----~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~ 106 (414)
T 3eiq_A 37 EIVDSFDDMN------LSESLLRGIYAYGFEKPSAIQQRAILPCI----KGYDVIAQAQSGTGKTATFAISILQQIELDL 106 (414)
T ss_dssp CCCCCGGGGC------CCHHHHHHHHHTTCCSCCHHHHHHHHHHH----TTCCEEECCCSCSSSHHHHHHHHHHHCCTTS
T ss_pred chhcCHhhCC------CCHHHHHHHHHcCCCCCCHHHHHHhHHHh----CCCCEEEECCCCCcccHHHHHHHHHHHhhcC
Confidence 3445777777 99999999999999999999999998888 5889999999999999999999999887642
Q ss_pred cCCceEEEEcccHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcCCCcEEEe
Q 017196 99 VRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVA 178 (375)
Q Consensus 99 ~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiV~ 178 (375)
.+.++||++||++|+.|+.+.+++++...+..+....|+......... ....+++|+|+
T Consensus 107 -~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~iiv~ 165 (414)
T 3eiq_A 107 -KATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQK--------------------LQMEAPHIIVG 165 (414)
T ss_dssp -CSCCEEEECSSHHHHHHHHHHHHHHGGGSCCCEEECCCCTTHHHHHHH--------------------HTTTCCSEEEE
T ss_pred -CceeEEEEeChHHHHHHHHHHHHHHhcccCceEEEEECCcchHHHHHH--------------------HhcCCCCEEEE
Confidence 455899999999999999999999998888999999998876555331 12256899999
Q ss_pred CcHHHHHHHhhcCCCCCCCccEEEEecchhhhhHhHHhHHHHHHHhhhcccccccccccccccccccccccccccccccC
Q 017196 179 TPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERG 258 (375)
Q Consensus 179 Tp~~l~~~l~~~~~~~~~~~~~vIiDE~h~l~~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (375)
||++|.+.+.. ..+.+..+++||+||||++.+.++...+..++..++.
T Consensus 166 T~~~l~~~l~~-~~~~~~~~~~vViDEah~~~~~~~~~~~~~~~~~~~~------------------------------- 213 (414)
T 3eiq_A 166 TPGRVFDMLNR-RYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQKLNS------------------------------- 213 (414)
T ss_dssp CHHHHHHHHHH-TSSCSTTCCEEEECSHHHHHHTTTHHHHHHHHTTSCT-------------------------------
T ss_pred CHHHHHHHHHc-CCcccccCcEEEEECHHHhhccCcHHHHHHHHHhCCC-------------------------------
Confidence 99999999987 5577889999999999999888887777777766654
Q ss_pred CCCCCCCceeEEEEEEecCCCchhhhccccCCCeEEecCCccccCcccceeEEEecc-CCCcHHHHHHHHHhcCCCeEEE
Q 017196 259 FKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICE-SKLKPLYLVALLQSLGEEKCIV 337 (375)
Q Consensus 259 ~~~~~~~~~q~i~~SATl~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~~~~~~-~~~k~~~l~~ll~~~~~~k~lI 337 (375)
+.|++++|||++.....+...++.++..+........ ...+.+.+..+. ...+...+.+++.....+++||
T Consensus 214 -------~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lv 285 (414)
T 3eiq_A 214 -------NTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKEELT-LEGIRQFYINVEREEWKLDTLCDLYETLTITQAVI 285 (414)
T ss_dssp -------TCEEEEECSCCCHHHHHHHTTTCSSCEEECCCCCCCC-TTSCCEEEEECSSSTTHHHHHHHHHHSSCCSSCEE
T ss_pred -------CCeEEEEEEecCHHHHHHHHHHcCCCEEEEecCCccC-CCCceEEEEEeChHHhHHHHHHHHHHhCCCCcEEE
Confidence 6789999999998888888888888888776655433 344555555444 4558889999999888889999
Q ss_pred EcCChhhHHHHHHHHHHhcCCcceEEecccccccccc
Q 017196 338 FTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVR 374 (375)
Q Consensus 338 F~~s~~~a~~l~~~L~~~g~~~~~~~~lh~~~~~~~R 374 (375)
||+++++|+.+++.|.. .++.+..+||+|++.+|
T Consensus 286 f~~~~~~~~~l~~~l~~---~~~~~~~~h~~~~~~~r 319 (414)
T 3eiq_A 286 FINTRRKVDWLTEKMHA---RDFTVSAMHGDMDQKER 319 (414)
T ss_dssp ECSCHHHHHHHHHHHHT---TTCCCEEC---CHHHHH
T ss_pred EeCCHHHHHHHHHHHHh---cCCeEEEecCCCCHHHH
Confidence 99999999999999994 45899999999999887
No 7
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=100.00 E-value=3.7e-38 Score=302.63 Aligned_cols=280 Identities=19% Similarity=0.242 Sum_probs=228.5
Q ss_pred CccCccccCCCCCCCCCCHHHHHHHHhCCCCCccHhhHHHHHHhhCCCCCCCCEEEECCCCCchHHHhHHHHHHHhhhcc
Q 017196 19 VDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRA 98 (375)
Q Consensus 19 ~~~~~~~~~~~~~~~~l~~~i~~~l~~~g~~~~~~~Q~~~~~~~~~~~~~~~~~ii~a~TGsGKTl~~~l~il~~l~~~~ 98 (375)
+...+|++++ +++.+.+++.+.|+.+|+|+|.++++.++.. .++++++++|||+|||++|+++++..+....
T Consensus 2 ~~~~~f~~~~------l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~--~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~ 73 (395)
T 3pey_A 2 AMAKSFDELG------LAPELLKGIYAMKFQKPSKIQERALPLLLHN--PPRNMIAQSQSGTGKTAAFSLTMLTRVNPED 73 (395)
T ss_dssp --CCSSTTSC------CCHHHHHHHHHTTCCSCCHHHHHHHHHHHCS--SCCCEEEECCTTSCHHHHHHHHHHHHCCTTC
T ss_pred ccccCHhhCC------CCHHHHHHHHHCCCCCCCHHHHHHHHHHHcC--CCCeEEEECCCCCcHHHHHHHHHHHHhccCC
Confidence 3467899999 9999999999999999999999999998852 2389999999999999999999999887643
Q ss_pred cCCceEEEEcccHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcCCCcEEEe
Q 017196 99 VRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVA 178 (375)
Q Consensus 99 ~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiV~ 178 (375)
.+.++||++||++|+.|+++.+++++...++.+...+++.... ....+++|+|+
T Consensus 74 -~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------~~~~~~~iiv~ 127 (395)
T 3pey_A 74 -ASPQAICLAPSRELARQTLEVVQEMGKFTKITSQLIVPDSFEK-------------------------NKQINAQVIVG 127 (395)
T ss_dssp -CSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEESTTSSCT-------------------------TSCBCCSEEEE
T ss_pred -CCccEEEECCCHHHHHHHHHHHHHHhcccCeeEEEEecCchhh-------------------------hccCCCCEEEE
Confidence 4568999999999999999999999887788888887765321 11236799999
Q ss_pred CcHHHHHHHhhcCCCCCCCccEEEEecchhhhh-HhHHhHHHHHHHhhhccccccccccccccccccccccccccccccc
Q 017196 179 TPGRLMDHINATRGFTLEHLCYLVVDETDRLLR-EAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVER 257 (375)
Q Consensus 179 Tp~~l~~~l~~~~~~~~~~~~~vIiDE~h~l~~-~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (375)
||+++.+.+.+ ..+.+.++++||+||||++.+ .++...+..+...++.
T Consensus 128 T~~~l~~~~~~-~~~~~~~~~~iIiDEah~~~~~~~~~~~~~~~~~~~~~------------------------------ 176 (395)
T 3pey_A 128 TPGTVLDLMRR-KLMQLQKIKIFVLDEADNMLDQQGLGDQCIRVKRFLPK------------------------------ 176 (395)
T ss_dssp CHHHHHHHHHT-TCBCCTTCCEEEEETHHHHHHSTTHHHHHHHHHHTSCT------------------------------
T ss_pred cHHHHHHHHHc-CCcccccCCEEEEEChhhhcCccccHHHHHHHHHhCCC------------------------------
Confidence 99999999877 557789999999999999987 4676667767666554
Q ss_pred CCCCCCCCceeEEEEEEecCCCchhhhccccCCCeEEecCCccccCcccceeEEEec-cCCCcHHHHHHHHHhcCCCeEE
Q 017196 258 GFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLIC-ESKLKPLYLVALLQSLGEEKCI 336 (375)
Q Consensus 258 ~~~~~~~~~~q~i~~SATl~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~~~~~-~~~~k~~~l~~ll~~~~~~k~l 336 (375)
+.|++++|||+++....+...++.++..+....... ....+.+.+..+ ....+...+..++.....+++|
T Consensus 177 --------~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l 247 (395)
T 3pey_A 177 --------DTQLVLFSATFADAVRQYAKKIVPNANTLELQTNEV-NVDAIKQLYMDCKNEADKFDVLTELYGLMTIGSSI 247 (395)
T ss_dssp --------TCEEEEEESCCCHHHHHHHHHHSCSCEEECCCGGGC-SCTTEEEEEEECSSHHHHHHHHHHHHTTTTSSEEE
T ss_pred --------CcEEEEEEecCCHHHHHHHHHhCCCCeEEEcccccc-ccccccEEEEEcCchHHHHHHHHHHHHhccCCCEE
Confidence 568999999999888888888877777776655443 234455555444 3446777888888887888999
Q ss_pred EEcCChhhHHHHHHHHHHhcCCcceEEeccccccccccC
Q 017196 337 VFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRR 375 (375)
Q Consensus 337 IF~~s~~~a~~l~~~L~~~g~~~~~~~~lh~~~~~~~R~ 375 (375)
|||+++++|+.+++.|+..+ +.+..+||+|+..+|+
T Consensus 248 vf~~~~~~~~~l~~~l~~~~---~~~~~~~~~~~~~~r~ 283 (395)
T 3pey_A 248 IFVATKKTANVLYGKLKSEG---HEVSILHGDLQTQERD 283 (395)
T ss_dssp EECSCHHHHHHHHHHHHHTT---CCCEEECTTSCHHHHH
T ss_pred EEeCCHHHHHHHHHHHHhcC---CcEEEeCCCCCHHHHH
Confidence 99999999999999999654 8999999999998873
No 8
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=100.00 E-value=3.2e-38 Score=305.07 Aligned_cols=281 Identities=20% Similarity=0.288 Sum_probs=231.2
Q ss_pred CccCccccCCCCCCCCCCHHHHHHHHhCCCCCccHhhHHHHHHhhCCCCCCCCEEEECCCCCchHHHhHHHHHHHhhhcc
Q 017196 19 VDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRA 98 (375)
Q Consensus 19 ~~~~~~~~~~~~~~~~l~~~i~~~l~~~g~~~~~~~Q~~~~~~~~~~~~~~~~~ii~a~TGsGKTl~~~l~il~~l~~~~ 98 (375)
.+..+|++++ +++.+.+.+.+.||..|+++|.++++.++.. .++++++++|||+|||++|++|++..+....
T Consensus 22 ~~~~~f~~~~------l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~--~~~~~lv~apTGsGKT~~~~~~~~~~~~~~~ 93 (412)
T 3fht_A 22 YSVKSFEELR------LKPQLLQGVYAMGFNRPSKIQENALPLMLAE--PPQNLIAQSQSGTGKTAAFVLAMLSQVEPAN 93 (412)
T ss_dssp CCSSCTGGGT------CCHHHHHHHHHTTCCSCCHHHHHHHHHHHSS--SCCCEEEECCTTSCHHHHHHHHHHHHCCTTS
T ss_pred cccCCHhhCC------CCHHHHHHHHHcCCCCCCHHHHHHHHHHhcC--CCCeEEEECCCCchHHHHHHHHHHHHhhhcC
Confidence 4567899998 9999999999999999999999999998852 3489999999999999999999999887653
Q ss_pred cCCceEEEEcccHHHHHHHHHHHHHhcccc-CceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcCCCcEEE
Q 017196 99 VRCLRALVVLPTRDLALQVKDVFAAIAPAV-GLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILV 177 (375)
Q Consensus 99 ~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiV 177 (375)
.++++||++||++|+.|+++.++++.... ++.+....++..... ....+++|+|
T Consensus 94 -~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------~~~~~~~ivv 148 (412)
T 3fht_A 94 -KYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLER------------------------GQKISEQIVI 148 (412)
T ss_dssp -CSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTCCCCT------------------------TCCCCCSEEE
T ss_pred -CCCCEEEECCCHHHHHHHHHHHHHHHhhcccceEEEeecCcchhh------------------------hhcCCCCEEE
Confidence 45689999999999999999999988764 677777777654211 1234579999
Q ss_pred eCcHHHHHHHhhcCCCCCCCccEEEEecchhhhh-HhHHhHHHHHHHhhhcccccccccccccccccccccccccccccc
Q 017196 178 ATPGRLMDHINATRGFTLEHLCYLVVDETDRLLR-EAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVE 256 (375)
Q Consensus 178 ~Tp~~l~~~l~~~~~~~~~~~~~vIiDE~h~l~~-~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (375)
+||+++.+.+.+.+.+.+..+++||+||||++.+ .++...+..+...++.
T Consensus 149 ~T~~~l~~~~~~~~~~~~~~~~~iViDEah~~~~~~~~~~~~~~~~~~~~~----------------------------- 199 (412)
T 3fht_A 149 GTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPR----------------------------- 199 (412)
T ss_dssp ECHHHHHHHHTTSCSSCGGGCCEEEEETHHHHHSTTTTHHHHHHHHHTSCT-----------------------------
T ss_pred ECchHHHHHHHhcCCcChhhCcEEEEeCHHHHhhcCCcHHHHHHHHhhCCC-----------------------------
Confidence 9999999999776667789999999999999986 4666666666666554
Q ss_pred cCCCCCCCCceeEEEEEEecCCCchhhhccccCCCeEEecCCccccCcccceeEEEecc-CCCcHHHHHHHHHhcCCCeE
Q 017196 257 RGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICE-SKLKPLYLVALLQSLGEEKC 335 (375)
Q Consensus 257 ~~~~~~~~~~~q~i~~SATl~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~~~~~~-~~~k~~~l~~ll~~~~~~k~ 335 (375)
+.|++++|||++.....+...++.++..+....... ....+.+.+..+. ...+...+..++.....+++
T Consensus 200 ---------~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 269 (412)
T 3fht_A 200 ---------NCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEE-TLDTIKQYYVLCSSRDEKFQALCNLYGAITIAQA 269 (412)
T ss_dssp ---------TCEEEEEESCCCHHHHHHHHHHSSSCEEECCCGGGS-SCTTEEEEEEECSSHHHHHHHHHHHHHHHSSSEE
T ss_pred ---------CceEEEEEeecCHHHHHHHHHhcCCCeEEeeccccc-cccCceEEEEEcCChHHHHHHHHHHHhhcCCCCE
Confidence 678999999999888888888888888877665543 3345555555554 35677888888888888899
Q ss_pred EEEcCChhhHHHHHHHHHHhcCCcceEEecccccccccc
Q 017196 336 IVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVR 374 (375)
Q Consensus 336 lIF~~s~~~a~~l~~~L~~~g~~~~~~~~lh~~~~~~~R 374 (375)
||||+++++|+.+++.|...+ +.+..+||+|++.+|
T Consensus 270 lvf~~~~~~~~~l~~~L~~~~---~~~~~~~~~~~~~~r 305 (412)
T 3fht_A 270 MIFCHTRKTASWLAAELSKEG---HQVALLSGEMMVEQR 305 (412)
T ss_dssp EEECSSHHHHHHHHHHHHHTT---CCCEEECTTSCHHHH
T ss_pred EEEeCCHHHHHHHHHHHHhCC---CeEEEecCCCCHHHH
Confidence 999999999999999999654 889999999999887
No 9
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=100.00 E-value=1.2e-38 Score=306.28 Aligned_cols=282 Identities=23% Similarity=0.366 Sum_probs=178.4
Q ss_pred CCccCccccCCCCCCCCCCHHHHHHHHhCCCCCccHhhHHHHHHhhCCCCCCCCEEEECCCCCchHHHhHHHHHHHhhhc
Q 017196 18 PVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNR 97 (375)
Q Consensus 18 ~~~~~~~~~~~~~~~~~l~~~i~~~l~~~g~~~~~~~Q~~~~~~~~~~~~~~~~~ii~a~TGsGKTl~~~l~il~~l~~~ 97 (375)
.....+|++++ +++.+.+.+..+|+.+|+++|.++++.++ .|+++++.+|||+|||++|++|++..+...
T Consensus 17 ~~~~~~f~~~~------l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~----~~~~~lv~~~TGsGKT~~~~~~~~~~l~~~ 86 (394)
T 1fuu_A 17 DKVVYKFDDME------LDENLLRGVFGYGFEEPSAIQQRAIMPII----EGHDVLAQAQSGTGKTGTFSIAALQRIDTS 86 (394)
T ss_dssp CCCCCSSGGGC------CCHHHHHHHHHHTCCSCCHHHHHHHHHHH----HTCCEEECCCSSHHHHHHHHHHHHHHCCTT
T ss_pred ccccCChhhcC------CCHHHHHHHHHcCCCCCCHHHHHHHHHHh----CCCCEEEECCCCChHHHHHHHHHHHHhhcc
Confidence 34566899999 99999999999999999999999999887 578999999999999999999999988764
Q ss_pred ccCCceEEEEcccHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcCCCcEEE
Q 017196 98 AVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILV 177 (375)
Q Consensus 98 ~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiV 177 (375)
..++++||++||++|+.|+++.+++++...++++..++|+......... + .+++|+|
T Consensus 87 -~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---------------------~-~~~~i~v 143 (394)
T 1fuu_A 87 -VKAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEG---------------------L-RDAQIVV 143 (394)
T ss_dssp -CCSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECSSCCHHHHHHH---------------------H-HHCSEEE
T ss_pred -CCCCCEEEEcCCHHHHHHHHHHHHHHhccCCeeEEEEeCCCchHHHHhh---------------------c-CCCCEEE
Confidence 2456899999999999999999999998888999999998876554321 1 1468999
Q ss_pred eCcHHHHHHHhhcCCCCCCCccEEEEecchhhhhHhHHhHHHHHHHhhhccccccccccccccccccccccccccccccc
Q 017196 178 ATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVER 257 (375)
Q Consensus 178 ~Tp~~l~~~l~~~~~~~~~~~~~vIiDE~h~l~~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (375)
+||+++.+.+.+ ..+.+..+++||+||||++.+.++...+..++..++.
T Consensus 144 ~T~~~l~~~~~~-~~~~~~~~~~vIiDEah~~~~~~~~~~~~~~~~~~~~------------------------------ 192 (394)
T 1fuu_A 144 GTPGRVFDNIQR-RRFRTDKIKMFILDEADEMLSSGFKEQIYQIFTLLPP------------------------------ 192 (394)
T ss_dssp ECHHHHHHHHHT-TSSCCTTCCEEEEETHHHHHHTTCHHHHHHHHHHSCT------------------------------
T ss_pred ECHHHHHHHHHh-CCcchhhCcEEEEEChHHhhCCCcHHHHHHHHHhCCC------------------------------
Confidence 999999999887 4577889999999999999888888778877777654
Q ss_pred CCCCCCCCceeEEEEEEecCCCchhhhccccCCCeEEecCCccccCcccceeEEEeccCC-CcHHHHHHHHHhcCCCeEE
Q 017196 258 GFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESK-LKPLYLVALLQSLGEEKCI 336 (375)
Q Consensus 258 ~~~~~~~~~~q~i~~SATl~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~-~k~~~l~~ll~~~~~~k~l 336 (375)
..|++++|||++.........++.++..+........ ...+.+.+..+... .+...+.++++....+++|
T Consensus 193 --------~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l 263 (394)
T 1fuu_A 193 --------TTQVVLLSATMPNDVLEVTTKFMRNPVRILVKKDELT-LEGIKQFYVNVEEEEYKYECLTDLYDSISVTQAV 263 (394)
T ss_dssp --------TCEEEEECSSCCHHHHHHHHHHCCSCEEEEECC---------------------------------------
T ss_pred --------CceEEEEEEecCHHHHHHHHHhcCCCeEEEecCcccc-CCCceEEEEEcCchhhHHHHHHHHHhcCCCCcEE
Confidence 5689999999998777777778888887776554422 23444554444433 4777788888877778999
Q ss_pred EEcCChhhHHHHHHHHHHhcCCcceEEeccccccccccC
Q 017196 337 VFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRR 375 (375)
Q Consensus 337 IF~~s~~~a~~l~~~L~~~g~~~~~~~~lh~~~~~~~R~ 375 (375)
|||+++++|+.+++.|+. .++.+..+||+|+..+|+
T Consensus 264 Vf~~~~~~~~~l~~~L~~---~~~~~~~~~~~~~~~~r~ 299 (394)
T 1fuu_A 264 IFCNTRRKVEELTTKLRN---DKFTVSAIYSDLPQQERD 299 (394)
T ss_dssp ---------------------------------------
T ss_pred EEECCHHHHHHHHHHHHH---cCCeEEEeeCCCCHHHHH
Confidence 999999999999999995 458999999999998874
No 10
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=8.2e-37 Score=290.36 Aligned_cols=274 Identities=26% Similarity=0.384 Sum_probs=227.1
Q ss_pred ccCccccCCCCCCCCCCHHHHHHHHhCCCCCccHhhHHHHHHhhCCCCCCCCEEEECCCCCchHHHhHHHHHHHhhhccc
Q 017196 20 DVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAV 99 (375)
Q Consensus 20 ~~~~~~~~~~~~~~~l~~~i~~~l~~~g~~~~~~~Q~~~~~~~~~~~~~~~~~ii~a~TGsGKTl~~~l~il~~l~~~~~ 99 (375)
...+|++++ +++.+.+.+.+.|+.+|+++|.++++.++. .++++++.+|||+|||++|+++++..+...
T Consensus 4 ~~~~f~~~~------l~~~~~~~l~~~g~~~~~~~Q~~~i~~~~~---~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~-- 72 (367)
T 1hv8_A 4 EYMNFNELN------LSDNILNAIRNKGFEKPTDIQMKVIPLFLN---DEYNIVAQARTGSGKTASFAIPLIELVNEN-- 72 (367)
T ss_dssp CCCCGGGSS------CCHHHHHHHHHHTCCSCCHHHHHHHHHHHH---TCSEEEEECCSSSSHHHHHHHHHHHHSCSS--
T ss_pred ccCchhhcC------CCHHHHHHHHHcCCCCCCHHHHHHHHHHhC---CCCCEEEECCCCChHHHHHHHHHHHHhccc--
Confidence 345788888 999999999999999999999999998884 347999999999999999999999887654
Q ss_pred CCceEEEEcccHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcCCCcEEEeC
Q 017196 100 RCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVAT 179 (375)
Q Consensus 100 ~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiV~T 179 (375)
.+.++||++|+++|+.|+.+.++++....++.+..++|+........ .+ .+++|+|+|
T Consensus 73 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~---------------------~~-~~~~iiv~T 130 (367)
T 1hv8_A 73 NGIEAIILTPTRELAIQVADEIESLKGNKNLKIAKIYGGKAIYPQIK---------------------AL-KNANIVVGT 130 (367)
T ss_dssp SSCCEEEECSCHHHHHHHHHHHHHHHCSSCCCEEEECTTSCHHHHHH---------------------HH-HTCSEEEEC
T ss_pred CCCcEEEEcCCHHHHHHHHHHHHHHhCCCCceEEEEECCcchHHHHh---------------------hc-CCCCEEEec
Confidence 45589999999999999999999998887889999999877655432 11 257999999
Q ss_pred cHHHHHHHhhcCCCCCCCccEEEEecchhhhhHhHHhHHHHHHHhhhcccccccccccccccccccccccccccccccCC
Q 017196 180 PGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGF 259 (375)
Q Consensus 180 p~~l~~~l~~~~~~~~~~~~~vIiDE~h~l~~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (375)
|+++.+.+.. ..+.+..+++||+||||++.+.++...+..++..++.
T Consensus 131 ~~~l~~~~~~-~~~~~~~~~~iIiDEah~~~~~~~~~~~~~~~~~~~~-------------------------------- 177 (367)
T 1hv8_A 131 PGRILDHINR-GTLNLKNVKYFILDEADEMLNMGFIKDVEKILNACNK-------------------------------- 177 (367)
T ss_dssp HHHHHHHHHT-TCSCTTSCCEEEEETHHHHHTTTTHHHHHHHHHTSCS--------------------------------
T ss_pred HHHHHHHHHc-CCcccccCCEEEEeCchHhhhhchHHHHHHHHHhCCC--------------------------------
Confidence 9999999887 4577889999999999999888877777777666544
Q ss_pred CCCCCCceeEEEEEEecCCCchhhhccccCCCeEEecCCccccCcccceeEEEeccCCCcHHHHHHHHHhcCCCeEEEEc
Q 017196 260 KDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFT 339 (375)
Q Consensus 260 ~~~~~~~~q~i~~SATl~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~k~lIF~ 339 (375)
+.+++++|||++.........++.++..+.... ...+.+.+..+....+...+..+++ ....++||||
T Consensus 178 ------~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~l~~~l~-~~~~~~lvf~ 245 (367)
T 1hv8_A 178 ------DKRILLFSATMPREILNLAKKYMGDYSFIKAKI-----NANIEQSYVEVNENERFEALCRLLK-NKEFYGLVFC 245 (367)
T ss_dssp ------SCEEEEECSSCCHHHHHHHHHHCCSEEEEECCS-----SSSSEEEEEECCGGGHHHHHHHHHC-STTCCEEEEC
T ss_pred ------CceEEEEeeccCHHHHHHHHHHcCCCeEEEecC-----CCCceEEEEEeChHHHHHHHHHHHh-cCCCcEEEEE
Confidence 567999999998877777777766665554432 2356667777777788888888887 3556899999
Q ss_pred CChhhHHHHHHHHHHhcCCcceEEecccccccccc
Q 017196 340 SSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVR 374 (375)
Q Consensus 340 ~s~~~a~~l~~~L~~~g~~~~~~~~lh~~~~~~~R 374 (375)
+++++|+.+++.|+..| +.+..+||+|+..+|
T Consensus 246 ~~~~~~~~l~~~L~~~~---~~~~~~~~~~~~~~r 277 (367)
T 1hv8_A 246 KTKRDTKELASMLRDIG---FKAGAIHGDLSQSQR 277 (367)
T ss_dssp SSHHHHHHHHHHHHHTT---CCEEEECSSSCHHHH
T ss_pred CCHHHHHHHHHHHHhcC---CCeEEeeCCCCHHHH
Confidence 99999999999999654 889999999998877
No 11
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=100.00 E-value=6.2e-38 Score=309.82 Aligned_cols=281 Identities=20% Similarity=0.281 Sum_probs=170.7
Q ss_pred ccCccccCCCCCCCCCCHHHHHHHHhCCCCCccHhhHHHHHHhhCCCCCCCCEEEECCCCCchHHHhHHHHHHHhhhccc
Q 017196 20 DVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAV 99 (375)
Q Consensus 20 ~~~~~~~~~~~~~~~l~~~i~~~l~~~g~~~~~~~Q~~~~~~~~~~~~~~~~~ii~a~TGsGKTl~~~l~il~~l~~~~~ 99 (375)
+..+|++++ +++.+.+.+.++||..|+++|.++++.++.. .+++++++||||||||++|++|++..+....
T Consensus 90 ~~~~f~~~~------l~~~l~~~l~~~g~~~p~~~Q~~ai~~il~~--~~~~~l~~a~TGsGKT~~~~l~il~~l~~~~- 160 (479)
T 3fmp_B 90 SVKSFEELR------LKPQLLQGVYAMGFNRPSKIQENALPLMLAE--PPQNLIAQSQSGTGKTAAFVLAMLSQVEPAN- 160 (479)
T ss_dssp CCCCSGGGT------CCHHHHHHHHHTTCCSCCHHHHHHHHHHTSB--SCCEEEEECCSSSSHHHHHHHHHHTTCCTTS-
T ss_pred CcCCHHHcC------CCHHHHHHHHHcCCCCCCHHHHHHHHHHHcC--CCCcEEEEcCCCCchhHHHHHHHHHHHhhcC-
Confidence 345777777 9999999999999999999999999988741 2489999999999999999999999887653
Q ss_pred CCceEEEEcccHHHHHHHHHHHHHhcccc-CceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcCCCcEEEe
Q 017196 100 RCLRALVVLPTRDLALQVKDVFAAIAPAV-GLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVA 178 (375)
Q Consensus 100 ~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiV~ 178 (375)
.++++||++||++|+.|+++.++++.... ++.+....++..... ....+++|+|+
T Consensus 161 ~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------~~~~~~~Ivv~ 216 (479)
T 3fmp_B 161 KYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLER------------------------GQKISEQIVIG 216 (479)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHHTTSTTCCEEEESTTCCCCT------------------------TCCCCCSEEEE
T ss_pred CCCcEEEEeChHHHHHHHHHHHHHHHhhCCCceEEEEeCCccccc------------------------cccCCCCEEEE
Confidence 45689999999999999999999887654 567777777653211 11335699999
Q ss_pred CcHHHHHHHhhcCCCCCCCccEEEEecchhhhh-HhHHhHHHHHHHhhhccccccccccccccccccccccccccccccc
Q 017196 179 TPGRLMDHINATRGFTLEHLCYLVVDETDRLLR-EAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVER 257 (375)
Q Consensus 179 Tp~~l~~~l~~~~~~~~~~~~~vIiDE~h~l~~-~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (375)
||+++.+++.+.+.+.+.++++||+||+|++.+ .++...+..+...++.
T Consensus 217 Tp~~l~~~l~~~~~~~~~~~~~iViDEah~~~~~~~~~~~~~~i~~~~~~------------------------------ 266 (479)
T 3fmp_B 217 TPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPR------------------------------ 266 (479)
T ss_dssp CHHHHHHHHTTSCCCCGGGCCEEEECCHHHHHTSTTHHHHHHHHHTTSCT------------------------------
T ss_pred CchHHHHHHHhcCCcCcccCCEEEEECHHHHhhcCCcHHHHHHHHhhCCc------------------------------
Confidence 999999999876667889999999999999986 4676666666655544
Q ss_pred CCCCCCCCceeEEEEEEecCCCchhhhccccCCCeEEecCCccccCcccceeEEEecc-CCCcHHHHHHHHHhcCCCeEE
Q 017196 258 GFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICE-SKLKPLYLVALLQSLGEEKCI 336 (375)
Q Consensus 258 ~~~~~~~~~~q~i~~SATl~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~~~~~~-~~~k~~~l~~ll~~~~~~k~l 336 (375)
+.|++++|||++.....+...++.++..+.+...... ...+.+.+..+. ...+...+..++.....+++|
T Consensus 267 --------~~~~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l 337 (479)
T 3fmp_B 267 --------NCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEET-LDTIKQYYVLCSSRDEKFQALCNLYGAITIAQAM 337 (479)
T ss_dssp --------TSEEEEEESCCCHHHHHHHHHHSSSEEEEEEC----------------------------------------
T ss_pred --------cceEEEEeCCCCHHHHHHHHHHcCCCeEEeccccccC-cCCceEEEEEeCCHHHHHHHHHHHHhhccCCceE
Confidence 6789999999998888888888888888877665432 344555555554 456778888888877778999
Q ss_pred EEcCChhhHHHHHHHHHHhcCCcceEEeccccccccccC
Q 017196 337 VFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRR 375 (375)
Q Consensus 337 IF~~s~~~a~~l~~~L~~~g~~~~~~~~lh~~~~~~~R~ 375 (375)
|||+++++|+.+++.|... ++.+..+||+|++.+|+
T Consensus 338 vF~~s~~~~~~l~~~L~~~---~~~v~~lh~~~~~~~R~ 373 (479)
T 3fmp_B 338 IFCHTRKTASWLAAELSKE---GHQVALLSGEMMVEQRA 373 (479)
T ss_dssp ---------------------------------------
T ss_pred EEeCcHHHHHHHHHHHHhC---CccEEEecCCCCHHHHH
Confidence 9999999999999999954 48999999999999884
No 12
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=100.00 E-value=1.2e-36 Score=274.02 Aligned_cols=214 Identities=28% Similarity=0.404 Sum_probs=188.8
Q ss_pred CCCCccCccccCCCCCCCCCCHHHHHHHHhCCCCCccHhhHHHHHHhhCCCCCCCCEEEECCCCCchHHHhHHHHHHHhh
Q 017196 16 RSPVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLS 95 (375)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~l~~~i~~~l~~~g~~~~~~~Q~~~~~~~~~~~~~~~~~ii~a~TGsGKTl~~~l~il~~l~ 95 (375)
..|.+..+|++++ +++.+.+.+.+.||..|+++|.++++.++ .|+|+++++|||+|||++|++|++..+.
T Consensus 23 ~~p~~~~~f~~~~------l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~----~g~~~l~~apTGsGKT~~~~l~~l~~l~ 92 (242)
T 3fe2_A 23 NCPKPVLNFYEAN------FPANVMDVIARQNFTEPTAIQAQGWPVAL----SGLDMVGVAQTGSGKTLSYLLPAIVHIN 92 (242)
T ss_dssp CCCCCCSSTTTTT------CCHHHHHHHHTTTCCSCCHHHHHHHHHHH----HTCCEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred CCCCccCCHhhcC------CCHHHHHHHHHCCCCCCCHHHHHHHHHHh----CCCCEEEECCCcCHHHHHHHHHHHHHHH
Confidence 4588899999999 99999999999999999999999999887 6899999999999999999999999887
Q ss_pred hcc----cCCceEEEEcccHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcC
Q 017196 96 NRA----VRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQS 171 (375)
Q Consensus 96 ~~~----~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (375)
... ..++++||++||++|+.|+++.+++++...++++..++|+........ .+..
T Consensus 93 ~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---------------------~~~~ 151 (242)
T 3fe2_A 93 HQPFLERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIR---------------------DLER 151 (242)
T ss_dssp TSCCCCTTCCCSEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHH---------------------HHHH
T ss_pred hccccccCCCCEEEEEeCcHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHH---------------------HhcC
Confidence 532 346689999999999999999999999888999999999987665533 3455
Q ss_pred CCcEEEeCcHHHHHHHhhcCCCCCCCccEEEEecchhhhhHhHHhHHHHHHHhhhccccccccccccccccccccccccc
Q 017196 172 AVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIR 251 (375)
Q Consensus 172 ~~~IiV~Tp~~l~~~l~~~~~~~~~~~~~vIiDE~h~l~~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (375)
+++|+|+||+++.+++.+ ....++++++||+||||++.+.+|...+..++..++.
T Consensus 152 ~~~I~v~Tp~~l~~~l~~-~~~~~~~~~~lViDEah~l~~~~~~~~~~~i~~~~~~------------------------ 206 (242)
T 3fe2_A 152 GVEICIATPGRLIDFLEC-GKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRP------------------------ 206 (242)
T ss_dssp CCSEEEECHHHHHHHHHH-TSCCCTTCCEEEETTHHHHHHTTCHHHHHHHHTTSCS------------------------
T ss_pred CCCEEEECHHHHHHHHHc-CCCCcccccEEEEeCHHHHhhhCcHHHHHHHHHhCCc------------------------
Confidence 689999999999999987 5577899999999999999998898888888877655
Q ss_pred ccccccCCCCCCCCceeEEEEEEecCCCchhhhccccCCCeEEecCCc
Q 017196 252 RCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGET 299 (375)
Q Consensus 252 ~~~~~~~~~~~~~~~~q~i~~SATl~~~~~~~~~~~~~~~~~i~~~~~ 299 (375)
+.|+++||||+++.+..+++.++.+|..+.++..
T Consensus 207 --------------~~q~~~~SAT~~~~~~~~~~~~l~~~~~i~~~~~ 240 (242)
T 3fe2_A 207 --------------DRQTLMWSATWPKEVRQLAEDFLKDYIHINIGAL 240 (242)
T ss_dssp --------------SCEEEEEESCCCHHHHHHHHHHCSSCEEEEECC-
T ss_pred --------------cceEEEEEeecCHHHHHHHHHHCCCCEEEEecCC
Confidence 6789999999999999999999999999887654
No 13
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=100.00 E-value=1e-35 Score=300.46 Aligned_cols=287 Identities=26% Similarity=0.369 Sum_probs=221.6
Q ss_pred CCHHHHHHHHhCCCCCccHhhHHHHHHhhCCCCCCCCEEEECCCCCchHHHhHHHHHHHhhhcc---cCCceEEEEcccH
Q 017196 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRA---VRCLRALVVLPTR 111 (375)
Q Consensus 35 l~~~i~~~l~~~g~~~~~~~Q~~~~~~~~~~~~~~~~~ii~a~TGsGKTl~~~l~il~~l~~~~---~~~~~~lil~Pt~ 111 (375)
|++++.+++.++||..|+|+|.++++.++.. .++|+++.||||+|||++|++|+++.+.... ..++++|||+||+
T Consensus 28 l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~~--~~~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lvl~Ptr 105 (579)
T 3sqw_A 28 LDKEIHKAITRMEFPGLTPVQQKTIKPILSS--EDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTR 105 (579)
T ss_dssp SCHHHHHHHHTTTCSSCCHHHHHHHHHHHCS--SSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSH
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHHcc--CCCeEEEEcCCCcHHHHHHHHHHHHHHHhccccccCCCeEEEEcchH
Confidence 8999999999999999999999999988841 4789999999999999999999999987653 2346899999999
Q ss_pred HHHHHHHHHHHHhccc----cCceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcCCCcEEEeCcHHHHHHH
Q 017196 112 DLALQVKDVFAAIAPA----VGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHI 187 (375)
Q Consensus 112 ~L~~Q~~~~~~~~~~~----~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiV~Tp~~l~~~l 187 (375)
+|+.|+.+.++++... ..+.+..+.|+.........+ ...+++|+|+||++|.+++
T Consensus 106 ~La~Q~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l--------------------~~~~~~IlV~Tp~~l~~~l 165 (579)
T 3sqw_A 106 DLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKM--------------------NKLRPNIVIATPGRLIDVL 165 (579)
T ss_dssp HHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHH--------------------HHHCCSEEEECHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhcccccceEEEEEECCccHHHHHHHH--------------------hcCCCCEEEECHHHHHHHH
Confidence 9999999999988632 246788888887765554321 2346799999999999988
Q ss_pred hhcCCCCCCCccEEEEecchhhhhHhHHhHHHHHHHhhhcccccccccccccccccccccccccccccccCCCCCCCCce
Q 017196 188 NATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRL 267 (375)
Q Consensus 188 ~~~~~~~~~~~~~vIiDE~h~l~~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (375)
.+.....++.+++||+||||++.+.+|...+..+...++..... ...+.
T Consensus 166 ~~~~~~~~~~~~~lViDEah~l~~~gf~~~~~~i~~~l~~~~~~-------------------------------~~~~~ 214 (579)
T 3sqw_A 166 EKYSNKFFRFVDYKVLDEADRLLEIGFRDDLETISGILNEKNSK-------------------------------SADNI 214 (579)
T ss_dssp HHHHHHHCTTCCEEEEETHHHHTSTTTHHHHHHHHHHHHHHCSS-------------------------------CTTCC
T ss_pred HhccccccccCCEEEEEChHHhhcCCCHHHHHHHHHHhhhhhcc-------------------------------cccCc
Confidence 77434567889999999999999999988888888887653221 12257
Q ss_pred eEEEEEEecCCCchhhhccccCCCeEEecCCc---cccCcccceeEEEeccCCC-cH----HHHHHHHHh-cCCCeEEEE
Q 017196 268 VKMVLSATLTQDPNKLAQLDLHHPLFLTTGET---RYKLPERLESYKLICESKL-KP----LYLVALLQS-LGEEKCIVF 338 (375)
Q Consensus 268 q~i~~SATl~~~~~~~~~~~~~~~~~i~~~~~---~~~~~~~i~~~~~~~~~~~-k~----~~l~~ll~~-~~~~k~lIF 338 (375)
|+++||||++..+..+...++..+..+.+... .......+.+.+....... +. ..+...+.. ....++|||
T Consensus 215 ~~l~~SAT~~~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iVF 294 (579)
T 3sqw_A 215 KTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQSVVISEKFANSIFAAVEHIKKQIKERDSNYKAIIF 294 (579)
T ss_dssp EEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSSSCSSCTTEEEEEEEESSTTHHHHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred eEEEEeccCChHHHHHHHHHcCCCceEEEeecCccccccccccceEEEEecchhhhHHHHHHHHHHHHhhcCCCCcEEEE
Confidence 89999999999888888888887766654322 1122334555554444322 22 222333333 456799999
Q ss_pred cCChhhHHHHHHHHHHhcCCcceEEecccccccccc
Q 017196 339 TSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVR 374 (375)
Q Consensus 339 ~~s~~~a~~l~~~L~~~g~~~~~~~~lh~~~~~~~R 374 (375)
|+++++|+.+++.|......++.+..+||+|++.+|
T Consensus 295 ~~t~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~R 330 (579)
T 3sqw_A 295 APTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKR 330 (579)
T ss_dssp CSSHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHH
T ss_pred CCcHHHHHHHHHHHHHhhcCCCcEEEecCCCCHHHH
Confidence 999999999999998763346899999999999887
No 14
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=100.00 E-value=3.6e-35 Score=295.62 Aligned_cols=288 Identities=27% Similarity=0.362 Sum_probs=220.7
Q ss_pred CCHHHHHHHHhCCCCCccHhhHHHHHHhhCCCCCCCCEEEECCCCCchHHHhHHHHHHHhhhcc---cCCceEEEEcccH
Q 017196 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRA---VRCLRALVVLPTR 111 (375)
Q Consensus 35 l~~~i~~~l~~~g~~~~~~~Q~~~~~~~~~~~~~~~~~ii~a~TGsGKTl~~~l~il~~l~~~~---~~~~~~lil~Pt~ 111 (375)
+++++.+++.++||.+|+|+|.++++.++.. .++|++++||||+|||++|++|+++.+.... ..++++|||+||+
T Consensus 79 l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~~--~~~~~lv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lil~Ptr 156 (563)
T 3i5x_A 79 LDKEIHKAITRMEFPGLTPVQQKTIKPILSS--EDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTR 156 (563)
T ss_dssp SCHHHHHHHHTTCCSSCCHHHHHHHHHHHSS--SSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSH
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHhcC--CCCeEEEECCCCCCccHHHHHHHHHHHHhccccccCCeeEEEEcCcH
Confidence 8999999999999999999999999988831 4789999999999999999999999987753 2245899999999
Q ss_pred HHHHHHHHHHHHhccc----cCceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcCCCcEEEeCcHHHHHHH
Q 017196 112 DLALQVKDVFAAIAPA----VGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHI 187 (375)
Q Consensus 112 ~L~~Q~~~~~~~~~~~----~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiV~Tp~~l~~~l 187 (375)
+|+.|+++.++++... ....+..+.|+......... ....+++|+|+||+++.+++
T Consensus 157 ~La~Q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~--------------------~~~~~~~Iiv~Tp~~l~~~l 216 (563)
T 3i5x_A 157 DLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNK--------------------MNKLRPNIVIATPGRLIDVL 216 (563)
T ss_dssp HHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHH--------------------HHHHCCSEEEECHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhccccCceeEEEEECCcCHHHHHHH--------------------HhcCCCCEEEECcHHHHHHH
Confidence 9999999999987542 24668888888776555332 12346799999999999988
Q ss_pred hhcCCCCCCCccEEEEecchhhhhHhHHhHHHHHHHhhhcccccccccccccccccccccccccccccccCCCCCCCCce
Q 017196 188 NATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRL 267 (375)
Q Consensus 188 ~~~~~~~~~~~~~vIiDE~h~l~~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (375)
.+.....++.+++||+||||++.+.+|...+..+...++.... ...++.
T Consensus 217 ~~~~~~~~~~~~~lViDEah~l~~~~f~~~~~~i~~~l~~~~~-------------------------------~~~~~~ 265 (563)
T 3i5x_A 217 EKYSNKFFRFVDYKVLDEADRLLEIGFRDDLETISGILNEKNS-------------------------------KSADNI 265 (563)
T ss_dssp HHHHHHHCTTCCEEEEETHHHHTSTTTHHHHHHHHHHHHHHCS-------------------------------SCTTCC
T ss_pred HhccccccccceEEEEeCHHHHhccchHHHHHHHHHhhhhccc-------------------------------cCccCc
Confidence 7743345788999999999999999898888888888765322 112267
Q ss_pred eEEEEEEecCCCchhhhccccCCCeEEecCCcc---ccCcccceeEEEeccCC-CcH----HHHHHHHHh-cCCCeEEEE
Q 017196 268 VKMVLSATLTQDPNKLAQLDLHHPLFLTTGETR---YKLPERLESYKLICESK-LKP----LYLVALLQS-LGEEKCIVF 338 (375)
Q Consensus 268 q~i~~SATl~~~~~~~~~~~~~~~~~i~~~~~~---~~~~~~i~~~~~~~~~~-~k~----~~l~~ll~~-~~~~k~lIF 338 (375)
|+++||||++..+..+...++..+..+...... ......+.+.+...... .+. ..+...+.. ....++|||
T Consensus 266 ~~l~~SAT~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iVF 345 (563)
T 3i5x_A 266 KTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQSVVISEKFANSIFAAVEHIKKQIKERDSNYKAIIF 345 (563)
T ss_dssp EEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSSSCSSCTTEEEEEEEESSTTHHHHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred eEEEEEccCCHHHHHHHHHhcCCCceEEEeccCCCCccccccCceEEEECchhHhhHHHHHHHHHHHHhhcCCCCcEEEE
Confidence 899999999998888888888877665543221 12233444554444432 222 222233333 356799999
Q ss_pred cCChhhHHHHHHHHHHhcCCcceEEeccccccccccC
Q 017196 339 TSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRR 375 (375)
Q Consensus 339 ~~s~~~a~~l~~~L~~~g~~~~~~~~lh~~~~~~~R~ 375 (375)
|+++++|+.+++.|......++.+..+||+|++.+|.
T Consensus 346 ~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~ 382 (563)
T 3i5x_A 346 APTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRT 382 (563)
T ss_dssp CSCHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHH
T ss_pred cCcHHHHHHHHHHHHHhccCCceEEEecCCCCHHHHH
Confidence 9999999999999987643468999999999998873
No 15
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=100.00 E-value=2.6e-35 Score=262.76 Aligned_cols=216 Identities=29% Similarity=0.402 Sum_probs=180.0
Q ss_pred CCcCCCcCCCCccCcccc-CCCCCCCCCCHHHHHHHHhCCCCCccHhhHHHHHHhhCCCCCCCCEEEECCCCCchHHHhH
Q 017196 9 MPVLPWMRSPVDVSLFED-CPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYA 87 (375)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~i~~~l~~~g~~~~~~~Q~~~~~~~~~~~~~~~~~ii~a~TGsGKTl~~~ 87 (375)
++.......|.+..+|++ ++ +++.+.+++.+.||.+|+++|.++++.++ +|+|+++++|||+|||++|+
T Consensus 6 ~~~~~~~~~p~p~~~f~~~~~------l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~----~~~~~l~~apTGsGKT~~~~ 75 (228)
T 3iuy_A 6 LKSGEKRLIPKPTCRFKDAFQ------QYPDLLKSIIRVGILKPTPIQSQAWPIIL----QGIDLIVVAQTGTGKTLSYL 75 (228)
T ss_dssp CCSSSCCCCCCCCCSHHHHHT------TCHHHHHHHHHHTCCSCCHHHHHHHHHHH----TTCCEEEECCTTSCHHHHHH
T ss_pred ccCCccCcCCCChhhHhhhhc------cCHHHHHHHHHCCCCCCCHHHHHHHHHHh----CCCCEEEECCCCChHHHHHH
Confidence 344445677899999998 78 99999999999999999999999999887 68999999999999999999
Q ss_pred HHHHHHhhhc-----ccCCceEEEEcccHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHHhhcCccccCccCCc
Q 017196 88 LPIVQTLSNR-----AVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDP 162 (375)
Q Consensus 88 l~il~~l~~~-----~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (375)
+|++..+... ...++++||++||++|+.|+++.++.+. ..++++..++|+.......
T Consensus 76 l~~~~~l~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~-~~~~~~~~~~~~~~~~~~~----------------- 137 (228)
T 3iuy_A 76 MPGFIHLDSQPISREQRNGPGMLVLTPTRELALHVEAECSKYS-YKGLKSICIYGGRNRNGQI----------------- 137 (228)
T ss_dssp HHHHHHHC---------CCCSEEEECSSHHHHHHHHHHHHHHC-CTTCCEEEECC------CH-----------------
T ss_pred HHHHHHHHhccchhhccCCCcEEEEeCCHHHHHHHHHHHHHhc-ccCceEEEEECCCChHHHH-----------------
Confidence 9999887642 1255689999999999999999999986 3478888888886544332
Q ss_pred hhHHHhhcCCCcEEEeCcHHHHHHHhhcCCCCCCCccEEEEecchhhhhHhHHhHHHHHHHhhhcccccccccccccccc
Q 017196 163 EDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPS 242 (375)
Q Consensus 163 ~~~~~~~~~~~~IiV~Tp~~l~~~l~~~~~~~~~~~~~vIiDE~h~l~~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~ 242 (375)
..+..+++|+|+||+++.+++.. ..+.++++++||+||||++.+.+|...+..++..++.
T Consensus 138 ----~~~~~~~~iiv~Tp~~l~~~~~~-~~~~~~~~~~lViDEah~~~~~~~~~~~~~i~~~~~~--------------- 197 (228)
T 3iuy_A 138 ----EDISKGVDIIIATPGRLNDLQMN-NSVNLRSITYLVIDEADKMLDMEFEPQIRKILLDVRP--------------- 197 (228)
T ss_dssp ----HHHHSCCSEEEECHHHHHHHHHT-TCCCCTTCCEEEECCHHHHHHTTCHHHHHHHHHHSCS---------------
T ss_pred ----HHhcCCCCEEEECHHHHHHHHHc-CCcCcccceEEEEECHHHHhccchHHHHHHHHHhCCc---------------
Confidence 24556789999999999998877 5577899999999999999998888888888877755
Q ss_pred cccccccccccccccCCCCCCCCceeEEEEEEecCCCchhhhccccCCCeEEe
Q 017196 243 AFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLT 295 (375)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~~~~~~~~~~~~~~~i~ 295 (375)
+.|+++||||+++.+.++...++.+|..+.
T Consensus 198 -----------------------~~~~l~~SAT~~~~~~~~~~~~l~~p~~i~ 227 (228)
T 3iuy_A 198 -----------------------DRQTVMTSATWPDTVRQLALSYLKDPMIVY 227 (228)
T ss_dssp -----------------------SCEEEEEESCCCHHHHHHHHTTCSSCEEEE
T ss_pred -----------------------CCeEEEEEeeCCHHHHHHHHHHCCCCEEEe
Confidence 678999999999999999999999988765
No 16
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=100.00 E-value=2e-35 Score=267.76 Aligned_cols=215 Identities=27% Similarity=0.427 Sum_probs=182.1
Q ss_pred ccCccccCCCCCCCCCCHHHHHHHHhCCCCCccHhhHHHHHHhhCCCCCCCCEEEECCCCCchHHHhHHHHHHHhhhcc-
Q 017196 20 DVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRA- 98 (375)
Q Consensus 20 ~~~~~~~~~~~~~~~l~~~i~~~l~~~g~~~~~~~Q~~~~~~~~~~~~~~~~~ii~a~TGsGKTl~~~l~il~~l~~~~- 98 (375)
+..+|++++ +++.+.++|.+.||..|+++|.++++.++ .|+|+++++|||+|||++|++|++..+....
T Consensus 21 ~~~~f~~l~------l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~----~~~~~l~~a~TGsGKT~~~~~~~l~~l~~~~~ 90 (253)
T 1wrb_A 21 VIENFDELK------LDPTIRNNILLASYQRPTPIQKNAIPAIL----EHRDIMACAQTGSGKTAAFLIPIINHLVCQDL 90 (253)
T ss_dssp CCCSSGGGS------CCCSTTTTTTTTTCCSCCHHHHHHHHHHH----TTCCEEEECCTTSSHHHHHHHHHHHHHHTTCC
T ss_pred ccCCHhhCC------CCHHHHHHHHHCCCCCCCHHHHHHHHHHh----CCCCEEEECCCCChHHHHHHHHHHHHHHhhcc
Confidence 677899999 88999999999999999999999999887 5899999999999999999999999886542
Q ss_pred -------cCCceEEEEcccHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcC
Q 017196 99 -------VRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQS 171 (375)
Q Consensus 99 -------~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (375)
..++++||++||++|+.|+++.++.++...++.+..++|+.....+.. .+..
T Consensus 91 ~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---------------------~~~~ 149 (253)
T 1wrb_A 91 NQQRYSKTAYPKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIR---------------------EVQM 149 (253)
T ss_dssp ------CCBCCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHHH---------------------HHSS
T ss_pred ccccccccCCceEEEEECCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHH---------------------HhCC
Confidence 234689999999999999999999998888899999999876655432 4556
Q ss_pred CCcEEEeCcHHHHHHHhhcCCCCCCCccEEEEecchhhhhHhHHhHHHHHHHhhhccccccccccccccccccccccccc
Q 017196 172 AVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIR 251 (375)
Q Consensus 172 ~~~IiV~Tp~~l~~~l~~~~~~~~~~~~~vIiDE~h~l~~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (375)
+++|+|+||+++.+.+.. ..+.++.+++||+||||++.+.+|...+..++..+.....
T Consensus 150 ~~~Ivv~Tp~~l~~~l~~-~~~~~~~~~~lViDEah~~~~~~~~~~~~~i~~~~~~~~~--------------------- 207 (253)
T 1wrb_A 150 GCHLLVATPGRLVDFIEK-NKISLEFCKYIVLDEADRMLDMGFEPQIRKIIEESNMPSG--------------------- 207 (253)
T ss_dssp CCSEEEECHHHHHHHHHT-TSBCCTTCCEEEEETHHHHHHTTCHHHHHHHHHSSCCCCG---------------------
T ss_pred CCCEEEECHHHHHHHHHc-CCCChhhCCEEEEeCHHHHHhCchHHHHHHHHhhccCCCC---------------------
Confidence 789999999999999987 4567889999999999999998888888888875433211
Q ss_pred ccccccCCCCCCCCceeEEEEEEecCCCchhhhccccCCCeEEecCCcc
Q 017196 252 RCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETR 300 (375)
Q Consensus 252 ~~~~~~~~~~~~~~~~q~i~~SATl~~~~~~~~~~~~~~~~~i~~~~~~ 300 (375)
.+.|+++||||++..+..+.+.++.+|..+.++...
T Consensus 208 -------------~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~ 243 (253)
T 1wrb_A 208 -------------INRQTLMFSATFPKEIQKLAADFLYNYIFMTVGRVG 243 (253)
T ss_dssp -------------GGCEEEEEESSCCHHHHHHHHHHCSSCEEEEEC---
T ss_pred -------------CCcEEEEEEEeCCHHHHHHHHHHcCCCEEEEECCCC
Confidence 156899999999999999999999999988877654
No 17
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=100.00 E-value=4.1e-35 Score=265.05 Aligned_cols=209 Identities=32% Similarity=0.498 Sum_probs=182.8
Q ss_pred CccCccccCCCCCCCCCCHHHHHHHHhCCCCCccHhhHHHHHHhhCCCCCCCCEEEECCCCCchHHHhHHHHHHHhhhcc
Q 017196 19 VDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRA 98 (375)
Q Consensus 19 ~~~~~~~~~~~~~~~~l~~~i~~~l~~~g~~~~~~~Q~~~~~~~~~~~~~~~~~ii~a~TGsGKTl~~~l~il~~l~~~~ 98 (375)
.+..+|++++ +++.+.+.+.++|+..|+++|.++++.++ .|+++++++|||+|||++|++|++..+....
T Consensus 40 ~~~~~f~~l~------l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~----~~~~~lv~a~TGsGKT~~~~~~il~~l~~~~ 109 (249)
T 3ber_A 40 EETKTFKDLG------VTDVLCEACDQLGWTKPTKIQIEAIPLAL----QGRDIIGLAETGSGKTGAFALPILNALLETP 109 (249)
T ss_dssp HHHCCTGGGT------CCHHHHHHHHHTTCCSCCHHHHHHHHHHH----TTCCEEEECCTTSCHHHHHHHHHHHHHHHSC
T ss_pred cccCCHHHcC------CCHHHHHHHHHcCCCCCCHHHHHHHHHHh----CCCCEEEEcCCCCCchhHhHHHHHHHHhcCC
Confidence 3456899998 99999999999999999999999999887 5899999999999999999999999887653
Q ss_pred cCCceEEEEcccHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcCCCcEEEe
Q 017196 99 VRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVA 178 (375)
Q Consensus 99 ~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiV~ 178 (375)
.++++||++||++|+.|+++.+++++...++++..++|+........ .+..+++|+|+
T Consensus 110 -~~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---------------------~~~~~~~I~v~ 167 (249)
T 3ber_A 110 -QRLFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSL---------------------ALAKKPHIIIA 167 (249)
T ss_dssp -CSSCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECTTSCHHHHHH---------------------HHHTCCSEEEE
T ss_pred -CCceEEEEeCCHHHHHHHHHHHHHHhccCCeeEEEEECCCChHHHHH---------------------HhcCCCCEEEE
Confidence 45689999999999999999999999888999999999876544422 34567899999
Q ss_pred CcHHHHHHHhhcCCCCCCCccEEEEecchhhhhHhHHhHHHHHHHhhhcccccccccccccccccccccccccccccccC
Q 017196 179 TPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERG 258 (375)
Q Consensus 179 Tp~~l~~~l~~~~~~~~~~~~~vIiDE~h~l~~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (375)
||+++.+.+.+.+.+.++.+++||+||||++.+.+|...+..++..++.
T Consensus 168 Tp~~l~~~l~~~~~~~l~~~~~lViDEah~l~~~~~~~~l~~i~~~~~~------------------------------- 216 (249)
T 3ber_A 168 TPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPR------------------------------- 216 (249)
T ss_dssp CHHHHHHHHHHSTTCCCTTCCEEEECSHHHHHHTTCHHHHHHHHHSSCS-------------------------------
T ss_pred CHHHHHHHHHcCCCcCccccCEEEEcChhhhhccChHHHHHHHHHhCCC-------------------------------
Confidence 9999999998756677899999999999999998888888888877654
Q ss_pred CCCCCCCceeEEEEEEecCCCchhhhccccCCCeEEecC
Q 017196 259 FKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTG 297 (375)
Q Consensus 259 ~~~~~~~~~q~i~~SATl~~~~~~~~~~~~~~~~~i~~~ 297 (375)
+.|+++||||++..+.++.+.++.+|..+.++
T Consensus 217 -------~~~~l~~SAT~~~~v~~~~~~~l~~p~~i~v~ 248 (249)
T 3ber_A 217 -------DRKTFLFSATMTKKVQKLQRAALKNPVKCAVS 248 (249)
T ss_dssp -------SSEEEEEESSCCHHHHHHHHHHCSSCEEEECC
T ss_pred -------CCeEEEEeccCCHHHHHHHHHHCCCCEEEEec
Confidence 56899999999999999999999999887653
No 18
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=2.3e-34 Score=270.42 Aligned_cols=255 Identities=25% Similarity=0.352 Sum_probs=207.3
Q ss_pred CCHHHHHHHHhCCCCCccHhhHHHHHHhhCCCCCCCCEEEECCCCCchHHHhHHHHHHHhhhcccCCceEEEEcccHHHH
Q 017196 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLA 114 (375)
Q Consensus 35 l~~~i~~~l~~~g~~~~~~~Q~~~~~~~~~~~~~~~~~ii~a~TGsGKTl~~~l~il~~l~~~~~~~~~~lil~Pt~~L~ 114 (375)
|++.+.+++.++|+.+|+++|.++++.++ +++++++.+|||+|||++|+++++.. +.++||++|+++|+
T Consensus 1 l~~~i~~~l~~~g~~~l~~~Q~~~i~~i~----~~~~~lv~~~TGsGKT~~~~~~~~~~-------~~~~liv~P~~~L~ 69 (337)
T 2z0m_A 1 MNEKIEQAIREMGFKNFTEVQSKTIPLML----QGKNVVVRAKTGSGKTAAYAIPILEL-------GMKSLVVTPTRELT 69 (337)
T ss_dssp CCHHHHHHHHHTTCCSCCHHHHHHHHHHH----TTCCEEEECCTTSSHHHHHHHHHHHH-------TCCEEEECSSHHHH
T ss_pred CCHHHHHHHHHcCCCCCCHHHHHHHHHHh----cCCCEEEEcCCCCcHHHHHHHHHHhh-------cCCEEEEeCCHHHH
Confidence 57899999999999999999999999887 57899999999999999999998763 34799999999999
Q ss_pred HHHHHHHHHhccccCceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcCCCcEEEeCcHHHHHHHhhcCCCC
Q 017196 115 LQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFT 194 (375)
Q Consensus 115 ~Q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiV~Tp~~l~~~l~~~~~~~ 194 (375)
.|+++.+++++...++++..++|+........ .+ .+++|+|+||+++.+.+.. ..+.
T Consensus 70 ~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~-~~~~i~v~T~~~l~~~~~~-~~~~ 126 (337)
T 2z0m_A 70 RQVASHIRDIGRYMDTKVAEVYGGMPYKAQIN---------------------RV-RNADIVVATPGRLLDLWSK-GVID 126 (337)
T ss_dssp HHHHHHHHHHTTTSCCCEEEECTTSCHHHHHH---------------------HH-TTCSEEEECHHHHHHHHHT-TSCC
T ss_pred HHHHHHHHHHhhhcCCcEEEEECCcchHHHHh---------------------hc-CCCCEEEECHHHHHHHHHc-CCcc
Confidence 99999999999888899999999877655432 12 3479999999999998877 4567
Q ss_pred CCCccEEEEecchhhhhHhHHhHHHHHHHhhhcccccccccccccccccccccccccccccccCCCCCCCCceeEEEEEE
Q 017196 195 LEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSA 274 (375)
Q Consensus 195 ~~~~~~vIiDE~h~l~~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SA 274 (375)
+..+++||+||||++.+.++...+..++...+. ..+++++||
T Consensus 127 ~~~~~~iViDEah~~~~~~~~~~~~~~~~~~~~--------------------------------------~~~~~~~SA 168 (337)
T 2z0m_A 127 LSSFEIVIIDEADLMFEMGFIDDIKIILAQTSN--------------------------------------RKITGLFSA 168 (337)
T ss_dssp GGGCSEEEEESHHHHHHTTCHHHHHHHHHHCTT--------------------------------------CSEEEEEES
T ss_pred hhhCcEEEEEChHHhhccccHHHHHHHHhhCCc--------------------------------------ccEEEEEeC
Confidence 889999999999999888887777777766554 557899999
Q ss_pred ecCCCchhhhccccCCCeEEecCCccccCcccceeEEEeccCCCcHHHHHHHHHhcCCCeEEEEcCChhhHHHHHHHHHH
Q 017196 275 TLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNH 354 (375)
Q Consensus 275 Tl~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~k~lIF~~s~~~a~~l~~~L~~ 354 (375)
|++.........++.++..+.... ....+.+.+..+....+ .....+.....+++||||+++++++.+++.|.
T Consensus 169 T~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~- 241 (337)
T 2z0m_A 169 TIPEEIRKVVKDFITNYEEIEACI----GLANVEHKFVHVKDDWR--SKVQALRENKDKGVIVFVRTRNRVAKLVRLFD- 241 (337)
T ss_dssp CCCHHHHHHHHHHSCSCEEEECSG----GGGGEEEEEEECSSSSH--HHHHHHHTCCCSSEEEECSCHHHHHHHHTTCT-
T ss_pred cCCHHHHHHHHHhcCCceeeeccc----ccCCceEEEEEeChHHH--HHHHHHHhCCCCcEEEEEcCHHHHHHHHHHhh-
Confidence 999887777777777766654331 12345555555554433 33466666777899999999999999999887
Q ss_pred hcCCcceEEecccccccccc
Q 017196 355 FGELRIKIKEYSGLQRQSVR 374 (375)
Q Consensus 355 ~g~~~~~~~~lh~~~~~~~R 374 (375)
.+..+||+|+..+|
T Consensus 242 ------~~~~~~~~~~~~~r 255 (337)
T 2z0m_A 242 ------NAIELRGDLPQSVR 255 (337)
T ss_dssp ------TEEEECTTSCHHHH
T ss_pred ------hhhhhcCCCCHHHH
Confidence 37789999998887
No 19
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=100.00 E-value=1.5e-34 Score=253.57 Aligned_cols=202 Identities=27% Similarity=0.464 Sum_probs=176.3
Q ss_pred CccccCCCCCCCCCCHHHHHHHHhCCCCCccHhhHHHHHHhhCCCCCCCCEEEECCCCCchHHHhHHHHHHHhhhcccCC
Q 017196 22 SLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRC 101 (375)
Q Consensus 22 ~~~~~~~~~~~~~l~~~i~~~l~~~g~~~~~~~Q~~~~~~~~~~~~~~~~~ii~a~TGsGKTl~~~l~il~~l~~~~~~~ 101 (375)
.+|++++ +++++.+.+.++||..|+++|.++++.++ +++|+++.+|||+|||++|++|++..+... ..+
T Consensus 3 ~~f~~~~------l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~----~~~~~lv~apTGsGKT~~~~~~~~~~~~~~-~~~ 71 (206)
T 1vec_A 3 NEFEDYC------LKRELLMGIFEMGWEKPSPIQEESIPIAL----SGRDILARAKNGTGKSGAYLIPLLERLDLK-KDN 71 (206)
T ss_dssp SSGGGSC------CCHHHHHHHHTTTCCSCCHHHHHHHHHHH----TTCCEEEECCSSSTTHHHHHHHHHHHCCTT-SCS
T ss_pred CChhhcC------CCHHHHHHHHHCCCCCCCHHHHHHHHHHc----cCCCEEEECCCCCchHHHHHHHHHHHhccc-CCC
Confidence 4688888 99999999999999999999999999887 579999999999999999999999988654 245
Q ss_pred ceEEEEcccHHHHHHHHHHHHHhcccc-CceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcCCCcEEEeCc
Q 017196 102 LRALVVLPTRDLALQVKDVFAAIAPAV-GLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATP 180 (375)
Q Consensus 102 ~~~lil~Pt~~L~~Q~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiV~Tp 180 (375)
+++||++||++|+.|+++.++++.... ++.+..++|+........ .+..+++|+|+||
T Consensus 72 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---------------------~~~~~~~i~v~T~ 130 (206)
T 1vec_A 72 IQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIM---------------------RLDDTVHVVIATP 130 (206)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHH---------------------HTTSCCSEEEECH
T ss_pred eeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEeCCccHHHHHH---------------------hcCCCCCEEEeCH
Confidence 689999999999999999999998776 788999999877655432 4456789999999
Q ss_pred HHHHHHHhhcCCCCCCCccEEEEecchhhhhHhHHhHHHHHHHhhhcccccccccccccccccccccccccccccccCCC
Q 017196 181 GRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFK 260 (375)
Q Consensus 181 ~~l~~~l~~~~~~~~~~~~~vIiDE~h~l~~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (375)
+++.+.+.+ +...++.++++|+||||++.+.+|...+..+...++.
T Consensus 131 ~~l~~~~~~-~~~~~~~~~~lViDEah~~~~~~~~~~l~~i~~~~~~--------------------------------- 176 (206)
T 1vec_A 131 GRILDLIKK-GVAKVDHVQMIVLDEADKLLSQDFVQIMEDIILTLPK--------------------------------- 176 (206)
T ss_dssp HHHHHHHHT-TCSCCTTCCEEEEETHHHHTSTTTHHHHHHHHHHSCT---------------------------------
T ss_pred HHHHHHHHc-CCcCcccCCEEEEEChHHhHhhCcHHHHHHHHHhCCc---------------------------------
Confidence 999999887 5567889999999999999888888888888877754
Q ss_pred CCCCCceeEEEEEEecCCCchhhhccccCCCeEE
Q 017196 261 DKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFL 294 (375)
Q Consensus 261 ~~~~~~~q~i~~SATl~~~~~~~~~~~~~~~~~i 294 (375)
+.|++++|||+++.+.++++.++.+|..+
T Consensus 177 -----~~~~l~~SAT~~~~~~~~~~~~l~~p~~i 205 (206)
T 1vec_A 177 -----NRQILLYSATFPLSVQKFMNSHLEKPYEI 205 (206)
T ss_dssp -----TCEEEEEESCCCHHHHHHHHHHCSSCEEE
T ss_pred -----cceEEEEEeeCCHHHHHHHHHHcCCCeEe
Confidence 56899999999999999999998888765
No 20
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.5e-35 Score=294.54 Aligned_cols=270 Identities=17% Similarity=0.238 Sum_probs=193.5
Q ss_pred CCHHHHHHHHhCCCCCccHhhHHHHHHhhCCCCCCCCEEEECCCCCchHHHhHHHHHHHhhhcccCCceEEEEcccHHHH
Q 017196 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLA 114 (375)
Q Consensus 35 l~~~i~~~l~~~g~~~~~~~Q~~~~~~~~~~~~~~~~~ii~a~TGsGKTl~~~l~il~~l~~~~~~~~~~lil~Pt~~L~ 114 (375)
+++.+.+.+.+.|+..|+++|.+|++.++.. .++++++++|||+|||++|+++++..+.... .++++||++|+++|+
T Consensus 126 l~~~~~~~l~~~g~~~p~~~Q~~ai~~i~~~--~~~~~ll~apTGsGKT~~~~~~il~~l~~~~-~~~~vLvl~P~~~L~ 202 (508)
T 3fho_A 126 XXXXXXXXXXXXXXXXXXKIQEKALPLLLSN--PPRNMIGQSQSGTGKTAAFALTMLSRVDASV-PKPQAICLAPSRELA 202 (508)
T ss_dssp -------------CEECCCTTSSSHHHHHCS--SCCCEEEECCSSTTSHHHHHHHHHHHSCTTC-CSCCEEEECSCHHHH
T ss_pred cccccccccccccccCcHHHHHHHHHHHHcC--CCCCEEEECCCCccHHHHHHHHHHHHHHhCC-CCceEEEEECcHHHH
Confidence 7788889999999999999999999998852 2489999999999999999999999887653 456899999999999
Q ss_pred HHHHHHHHHhccccCceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcCCCcEEEeCcHHHHHHHhhcCCCC
Q 017196 115 LQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFT 194 (375)
Q Consensus 115 ~Q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiV~Tp~~l~~~l~~~~~~~ 194 (375)
.|+++.+++++...++.+....++.... ....+++|+|+||+++.+.+.. ..+.
T Consensus 203 ~Q~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------~~~~~~~Ivv~T~~~l~~~l~~-~~~~ 256 (508)
T 3fho_A 203 RQIMDVVTEMGKYTEVKTAFGIKDSVPK-------------------------GAKIDAQIVIGTPGTVMDLMKR-RQLD 256 (508)
T ss_dssp HHHHHHHHHHSTTSSCCEEC-----------------------------------CCCCSEEEECHHHHHHHHHT-TCSC
T ss_pred HHHHHHHHHhCCccCeeEEEEeCCcccc-------------------------cccCCCCEEEECHHHHHHHHHc-CCcc
Confidence 9999999999877666665555443211 1133679999999999998887 5577
Q ss_pred CCCccEEEEecchhhhh-HhHHhHHHHHHHhhhcccccccccccccccccccccccccccccccCCCCCCCCceeEEEEE
Q 017196 195 LEHLCYLVVDETDRLLR-EAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLS 273 (375)
Q Consensus 195 ~~~~~~vIiDE~h~l~~-~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~S 273 (375)
+..+++||+||||++.+ .++...+..+...++. +.|++++|
T Consensus 257 ~~~~~lIIiDEaH~~~~~~~~~~~~~~i~~~~~~--------------------------------------~~~~i~lS 298 (508)
T 3fho_A 257 ARDIKVFVLDEADNMLDQQGLGDQSMRIKHLLPR--------------------------------------NTQIVLFS 298 (508)
T ss_dssp CTTCCEEEECCHHHHTTC--CHHHHHHHHHHSCT--------------------------------------TCEEEEEE
T ss_pred ccCCCEEEEechhhhcccCCcHHHHHHHHHhCCc--------------------------------------CCeEEEEe
Confidence 89999999999999987 4677777777777655 67899999
Q ss_pred EecCCCchhhhccccCCCeEEecCCccccCcccceeEEEec-cCCCcHHHHHHHHHhcCCCeEEEEcCChhhHHHHHHHH
Q 017196 274 ATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLIC-ESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLL 352 (375)
Q Consensus 274 ATl~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~~~~~-~~~~k~~~l~~ll~~~~~~k~lIF~~s~~~a~~l~~~L 352 (375)
||+++....+...+..++..+......... ..+.+.+..+ ....+...+..++.....+++||||+++++|+.+++.|
T Consensus 299 AT~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~~~~~k~~~l~~ll~~~~~~~~LVF~~s~~~a~~l~~~L 377 (508)
T 3fho_A 299 ATFSERVEKYAERFAPNANEIRLKTEELSV-EGIKQLYMDCQSEEHKYNVLVELYGLLTIGQSIIFCKKKDTAEEIARRM 377 (508)
T ss_dssp SCCSTHHHHHHHHHSTTCEEECCCCCC-----CCCCEEEEC--CHHHHHHHHHHHC---CCCEEEBCSSTTTTTHHHHHH
T ss_pred CCCCHHHHHHHHHhcCCCeEEEeccccCCc-ccceEEEEECCchHHHHHHHHHHHHhcCCCcEEEEECCHHHHHHHHHHH
Confidence 999988888888888888777665544322 3344444444 45567778888888878889999999999999999999
Q ss_pred HHhcCCcceEEeccccccccccC
Q 017196 353 NHFGELRIKIKEYSGLQRQSVRR 375 (375)
Q Consensus 353 ~~~g~~~~~~~~lh~~~~~~~R~ 375 (375)
.. .++.+..+||+|+..+|+
T Consensus 378 ~~---~~~~v~~~hg~~~~~~R~ 397 (508)
T 3fho_A 378 TA---DGHTVACLTGNLEGAQRD 397 (508)
T ss_dssp TT---TTCCCCEEC-----CTTG
T ss_pred Hh---CCCcEEEEeCCCCHHHHH
Confidence 94 458899999999998874
No 21
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=100.00 E-value=1.7e-34 Score=258.87 Aligned_cols=211 Identities=29% Similarity=0.461 Sum_probs=180.9
Q ss_pred CCccCccccCCCCCCCCCCHHHHHHHHhCCCCCccHhhHHHHHHhhCCCCCCCCEEEECCCCCchHHHhHHHHHHHhhhc
Q 017196 18 PVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNR 97 (375)
Q Consensus 18 ~~~~~~~~~~~~~~~~~l~~~i~~~l~~~g~~~~~~~Q~~~~~~~~~~~~~~~~~ii~a~TGsGKTl~~~l~il~~l~~~ 97 (375)
+.+..+|++++ +++.+.+.|.+.|+..|+++|.++++.++ .|+|+++++|||+|||++|++|++..+...
T Consensus 21 ~~~~~~f~~~~------l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~----~~~~~li~a~TGsGKT~~~~~~~l~~l~~~ 90 (236)
T 2pl3_A 21 VNEITRFSDFP------LSKKTLKGLQEAQYRLVTEIQKQTIGLAL----QGKDVLGAAKTGSGKTLAFLVPVLEALYRL 90 (236)
T ss_dssp GGGCSBGGGSC------CCHHHHHHHHHTTCCBCCHHHHHHHHHHH----TTCCEEEECCTTSCHHHHHHHHHHHHHHHT
T ss_pred CcccCCHhhcC------CCHHHHHHHHHCCCCCCCHHHHHHHHHHh----CCCCEEEEeCCCCcHHHHHHHHHHHHHHhh
Confidence 45667899999 99999999999999999999999998887 589999999999999999999999988652
Q ss_pred c---cCCceEEEEcccHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcCCCc
Q 017196 98 A---VRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVD 174 (375)
Q Consensus 98 ~---~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (375)
. ..++++||++||++|+.|+++.++.++...++.+..++|+........ . ..+++
T Consensus 91 ~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---------------------~-~~~~~ 148 (236)
T 2pl3_A 91 QWTSTDGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAE---------------------R-INNIN 148 (236)
T ss_dssp TCCGGGCCCEEEECSSHHHHHHHHHHHHHHTTTSSCCEEEECCC--CHHHHH---------------------H-HTTCS
T ss_pred cccccCCceEEEEeCCHHHHHHHHHHHHHHhCCCCeeEEEEECCCCHHHHHH---------------------h-CCCCC
Confidence 1 245689999999999999999999999888899999999876554432 1 24679
Q ss_pred EEEeCcHHHHHHHhhcCCCCCCCccEEEEecchhhhhHhHHhHHHHHHHhhhcccccccccccccccccccccccccccc
Q 017196 175 ILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCG 254 (375)
Q Consensus 175 IiV~Tp~~l~~~l~~~~~~~~~~~~~vIiDE~h~l~~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (375)
|+|+||+++.+.+.....+.+..+++||+||||++.+.+|...+..++..++.
T Consensus 149 iiv~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~i~~~~~~--------------------------- 201 (236)
T 2pl3_A 149 ILVCTPGRLLQHMDETVSFHATDLQMLVLDEADRILDMGFADTMNAVIENLPK--------------------------- 201 (236)
T ss_dssp EEEECHHHHHHHHHHCSSCCCTTCCEEEETTHHHHHHTTTHHHHHHHHHTSCT---------------------------
T ss_pred EEEECHHHHHHHHHhcCCcccccccEEEEeChHHHhcCCcHHHHHHHHHhCCC---------------------------
Confidence 99999999999988755577889999999999999988888888888877755
Q ss_pred cccCCCCCCCCceeEEEEEEecCCCchhhhccccCCCeEEecCC
Q 017196 255 VERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGE 298 (375)
Q Consensus 255 ~~~~~~~~~~~~~q~i~~SATl~~~~~~~~~~~~~~~~~i~~~~ 298 (375)
+.|+++||||++..+..+.+.++.+|..+.+..
T Consensus 202 -----------~~~~l~~SAT~~~~~~~~~~~~~~~p~~i~~~~ 234 (236)
T 2pl3_A 202 -----------KRQTLLFSATQTKSVKDLARLSLKNPEYVWVHE 234 (236)
T ss_dssp -----------TSEEEEEESSCCHHHHHHHHHSCSSCEEEECCC
T ss_pred -----------CCeEEEEEeeCCHHHHHHHHHhCCCCEEEEeCC
Confidence 568999999999999999999999998887653
No 22
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=100.00 E-value=6e-35 Score=258.84 Aligned_cols=208 Identities=23% Similarity=0.352 Sum_probs=177.1
Q ss_pred cCccccCCCCCCCCCCHHHHHHHHhCCCCCccHhhHHHHHHhhCCCCCCCCEEEECCCCCchHHHhHHHHHHHhhhcccC
Q 017196 21 VSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVR 100 (375)
Q Consensus 21 ~~~~~~~~~~~~~~l~~~i~~~l~~~g~~~~~~~Q~~~~~~~~~~~~~~~~~ii~a~TGsGKTl~~~l~il~~l~~~~~~ 100 (375)
..+|++++ +++.+.+++.+.|+.+|+++|.++++.++ +|+|+++++|||+|||++|++|++..+.... .
T Consensus 3 ~~~f~~~~------l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~----~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~-~ 71 (219)
T 1q0u_A 3 ETQFTRFP------FQPFIIEAIKTLRFYKPTEIQERIIPGAL----RGESMVGQSQTGTGKTHAYLLPIMEKIKPER-A 71 (219)
T ss_dssp -CCGGGSC------CCHHHHHHHHHTTCCSCCHHHHHHHHHHH----HTCCEEEECCSSHHHHHHHHHHHHHHCCTTS-C
T ss_pred CCCHhhCC------CCHHHHHHHHHCCCCCCCHHHHHHHHHHh----CCCCEEEECCCCChHHHHHHHHHHHHHHhCc-C
Confidence 35789998 99999999999999999999999999887 5799999999999999999999999987642 4
Q ss_pred CceEEEEcccHHHHHHHHHHHHHhcccc----CceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcCCCcEE
Q 017196 101 CLRALVVLPTRDLALQVKDVFAAIAPAV----GLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDIL 176 (375)
Q Consensus 101 ~~~~lil~Pt~~L~~Q~~~~~~~~~~~~----~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ii 176 (375)
++++||++||++|+.|+++.+++++... ++.+..++|+...... .+.+..+++|+
T Consensus 72 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~---------------------~~~~~~~~~Ii 130 (219)
T 1q0u_A 72 EVQAVITAPTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKA---------------------LEKLNVQPHIV 130 (219)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHT---------------------TCCCSSCCSEE
T ss_pred CceEEEEcCcHHHHHHHHHHHHHHhhhcccccceEEEEEeCCCCHHHH---------------------HHHcCCCCCEE
Confidence 5689999999999999999999988766 6888888888654332 11334578999
Q ss_pred EeCcHHHHHHHhhcCCCCCCCccEEEEecchhhhhHhHHhHHHHHHHhhhcccccccccccccccccccccccccccccc
Q 017196 177 VATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVE 256 (375)
Q Consensus 177 V~Tp~~l~~~l~~~~~~~~~~~~~vIiDE~h~l~~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (375)
|+||+++.+.+.+ +.+.+..+++||+||||++.+.++...+..++..++.
T Consensus 131 v~Tp~~l~~~l~~-~~~~~~~~~~lViDEah~~~~~~~~~~l~~i~~~~~~----------------------------- 180 (219)
T 1q0u_A 131 IGTPGRINDFIRE-QALDVHTAHILVVDEADLMLDMGFITDVDQIAARMPK----------------------------- 180 (219)
T ss_dssp EECHHHHHHHHHT-TCCCGGGCCEEEECSHHHHHHTTCHHHHHHHHHTSCT-----------------------------
T ss_pred EeCHHHHHHHHHc-CCCCcCcceEEEEcCchHHhhhChHHHHHHHHHhCCc-----------------------------
Confidence 9999999999887 5577889999999999999988888888888777654
Q ss_pred cCCCCCCCCceeEEEEEEecCCCchhhhccccCCCeEEecCCc
Q 017196 257 RGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGET 299 (375)
Q Consensus 257 ~~~~~~~~~~~q~i~~SATl~~~~~~~~~~~~~~~~~i~~~~~ 299 (375)
+.|++++|||+++++.++.+.++.+|..+.+...
T Consensus 181 ---------~~~~l~~SAT~~~~~~~~~~~~~~~p~~~~~~~~ 214 (219)
T 1q0u_A 181 ---------DLQMLVFSATIPEKLKPFLKKYMENPTFVHVLEH 214 (219)
T ss_dssp ---------TCEEEEEESCCCGGGHHHHHHHCSSCEEEECC--
T ss_pred ---------ccEEEEEecCCCHHHHHHHHHHcCCCeEEEeecc
Confidence 5689999999999999999999999988876543
No 23
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=100.00 E-value=7.2e-35 Score=270.44 Aligned_cols=207 Identities=21% Similarity=0.304 Sum_probs=177.7
Q ss_pred ccCccccCCCCCCCCCCHHHHHHHHhCCCCCccHhhHHHHHHhhCCCCCCCCEEEECCCCCchHHHhHHHHHHHhhhccc
Q 017196 20 DVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAV 99 (375)
Q Consensus 20 ~~~~~~~~~~~~~~~l~~~i~~~l~~~g~~~~~~~Q~~~~~~~~~~~~~~~~~ii~a~TGsGKTl~~~l~il~~l~~~~~ 99 (375)
...+|++++ +++.+.+++.++||..|+++|.++++.++.. .++|++++||||||||++|++|+++.+... .
T Consensus 90 ~~~~f~~l~------l~~~l~~~l~~~g~~~pt~iQ~~ai~~il~~--~~~~~l~~a~TGsGKT~a~~lp~l~~l~~~-~ 160 (300)
T 3fmo_B 90 SVKSFEELR------LKPQLLQGVYAMGFNRPSKIQENALPLMLAE--PPQNLIAQSQSGTGKTAAFVLAMLSQVEPA-N 160 (300)
T ss_dssp CCCCSGGGT------CCHHHHHHHHHTTCCSCCHHHHHHHHHHTSS--SCCCEEEECCTTSSHHHHHHHHHHHHCCTT-S
T ss_pred CcCCHhhcC------CCHHHHHHHHHcCCCCCCHHHHHHHHHHHcC--CCCeEEEECCCCCCccHHHHHHHHHhhhcc-C
Confidence 456888888 9999999999999999999999999988741 248999999999999999999999998765 3
Q ss_pred CCceEEEEcccHHHHHHHHHHHHHhcccc-CceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcCCCcEEEe
Q 017196 100 RCLRALVVLPTRDLALQVKDVFAAIAPAV-GLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVA 178 (375)
Q Consensus 100 ~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiV~ 178 (375)
.++++||++||++||.|+++.++.++... ++.+..+.|+..... ....+++|+||
T Consensus 161 ~~~~~lil~PtreLa~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~------------------------~~~~~~~IlV~ 216 (300)
T 3fmo_B 161 KYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLER------------------------GQKISEQIVIG 216 (300)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEESTTCCCCT------------------------TCCCCCSEEEE
T ss_pred CCceEEEEcCcHHHHHHHHHHHHHHHhhCCCcEEEEEeCCccHhh------------------------hhcCCCCEEEE
Confidence 56689999999999999999999998765 688888888764311 11356799999
Q ss_pred CcHHHHHHHhhcCCCCCCCccEEEEecchhhhh-HhHHhHHHHHHHhhhccccccccccccccccccccccccccccccc
Q 017196 179 TPGRLMDHINATRGFTLEHLCYLVVDETDRLLR-EAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVER 257 (375)
Q Consensus 179 Tp~~l~~~l~~~~~~~~~~~~~vIiDE~h~l~~-~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (375)
||++|.+++.+.+.+.++++++||+||||++++ .+|...+..+...++.
T Consensus 217 TP~~l~~~l~~~~~~~l~~l~~lVlDEad~l~~~~~~~~~~~~i~~~~~~------------------------------ 266 (300)
T 3fmo_B 217 TPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPR------------------------------ 266 (300)
T ss_dssp CHHHHHHHHTTTCCCCGGGCSEEEETTHHHHHHSTTHHHHHHHHHTTSCT------------------------------
T ss_pred CHHHHHHHHHhcCCCChhhceEEEEeCHHHHhhccCcHHHHHHHHHhCCC------------------------------
Confidence 999999999775667889999999999999998 5888888888777654
Q ss_pred CCCCCCCCceeEEEEEEecCCCchhhhccccCCCeEEecC
Q 017196 258 GFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTG 297 (375)
Q Consensus 258 ~~~~~~~~~~q~i~~SATl~~~~~~~~~~~~~~~~~i~~~ 297 (375)
+.|+++||||++..+..+++.++.+|..+.+.
T Consensus 267 --------~~q~i~~SAT~~~~v~~~a~~~l~~p~~i~~~ 298 (300)
T 3fmo_B 267 --------NCQMLLFSATFEDSVWKFAQKVVPDPNVIKLK 298 (300)
T ss_dssp --------TCEEEEEESCCCHHHHHHHHHHSSSCEEEEEC
T ss_pred --------CCEEEEEeccCCHHHHHHHHHHCCCCeEEEec
Confidence 67899999999999999999999999988765
No 24
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=100.00 E-value=1.6e-34 Score=258.03 Aligned_cols=207 Identities=22% Similarity=0.322 Sum_probs=176.0
Q ss_pred CCccCccccCCCCCCCCCCHHHHHHHHhCCCCCccHhhHHHHHHhhCCCCCCCCEEEECCCCCchHHHhHHHHHHHhhhc
Q 017196 18 PVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNR 97 (375)
Q Consensus 18 ~~~~~~~~~~~~~~~~~l~~~i~~~l~~~g~~~~~~~Q~~~~~~~~~~~~~~~~~ii~a~TGsGKTl~~~l~il~~l~~~ 97 (375)
|.+..+|++++ +++.+.+.+.+.||..|+++|.++++.++ .|+|+++++|||+|||++|++|++..+...
T Consensus 20 ~~~~~~f~~l~------l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~----~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~ 89 (230)
T 2oxc_A 20 LAEPADFESLL------LSRPVLEGLRAAGFERPSPVQLKAIPLGR----CGLDLIVQAKSGTGKTCVFSTIALDSLVLE 89 (230)
T ss_dssp ----CCGGGGT------CCHHHHHHHHHTTCCSCCHHHHHHHHHHH----TTCCEEEECCTTSSHHHHHHHHHHHHCCTT
T ss_pred CCCCCCHhhcC------CCHHHHHHHHHCCCCCCCHHHHHHHHHHh----CCCCEEEECCCCCcHHHHHHHHHHHHHHhc
Confidence 56667899998 99999999999999999999999999877 589999999999999999999999988654
Q ss_pred ccCCceEEEEcccHHHHHHHHHHHHHhcccc-CceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcCCCcEE
Q 017196 98 AVRCLRALVVLPTRDLALQVKDVFAAIAPAV-GLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDIL 176 (375)
Q Consensus 98 ~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ii 176 (375)
. .++++||++||++|+.|+++.+++++... ++++..++|+........ ...+++|+
T Consensus 90 ~-~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~----------------------~~~~~~Ii 146 (230)
T 2oxc_A 90 N-LSTQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKT----------------------RLKKCHIA 146 (230)
T ss_dssp S-CSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHH----------------------HTTSCSEE
T ss_pred C-CCceEEEEeCCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHH----------------------hccCCCEE
Confidence 2 45689999999999999999999998765 789999999876554422 22468999
Q ss_pred EeCcHHHHHHHhhcCCCCCCCccEEEEecchhhhhHh-HHhHHHHHHHhhhccccccccccccccccccccccccccccc
Q 017196 177 VATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREA-YQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGV 255 (375)
Q Consensus 177 V~Tp~~l~~~l~~~~~~~~~~~~~vIiDE~h~l~~~~-~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (375)
|+||+++.+++.. ..+.++++++||+||||++.+.+ |...+..++..++.
T Consensus 147 v~Tp~~l~~~~~~-~~~~~~~~~~lViDEah~~~~~~~~~~~~~~i~~~~~~---------------------------- 197 (230)
T 2oxc_A 147 VGSPGRIKQLIEL-DYLNPGSIRLFILDEADKLLEEGSFQEQINWIYSSLPA---------------------------- 197 (230)
T ss_dssp EECHHHHHHHHHT-TSSCGGGCCEEEESSHHHHHSTTSSHHHHHHHHHHSCS----------------------------
T ss_pred EECHHHHHHHHhc-CCcccccCCEEEeCCchHhhcCcchHHHHHHHHHhCCC----------------------------
Confidence 9999999999877 55778899999999999998886 88888888877764
Q ss_pred ccCCCCCCCCceeEEEEEEecCCCchhhhccccCCCeEEec
Q 017196 256 ERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTT 296 (375)
Q Consensus 256 ~~~~~~~~~~~~q~i~~SATl~~~~~~~~~~~~~~~~~i~~ 296 (375)
+.|++++|||+++.+.++...++.+|..+.+
T Consensus 198 ----------~~~~l~lSAT~~~~~~~~~~~~~~~p~~i~~ 228 (230)
T 2oxc_A 198 ----------SKQMLAVSATYPEFLANALTKYMRDPTFVRL 228 (230)
T ss_dssp ----------SCEEEEEESCCCHHHHHHHTTTCSSCEEECC
T ss_pred ----------CCeEEEEEeccCHHHHHHHHHHcCCCeEEEc
Confidence 5689999999998888888889888887754
No 25
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=100.00 E-value=6.5e-35 Score=261.83 Aligned_cols=210 Identities=26% Similarity=0.404 Sum_probs=173.0
Q ss_pred CCCccCccccCCCCCCCCCCHHHHHHHHhCCCCCccHhhHHHHHHhhCCCCCCCCEEEECCCCCchHHHhHHHHHHHhhh
Q 017196 17 SPVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSN 96 (375)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~l~~~i~~~l~~~g~~~~~~~Q~~~~~~~~~~~~~~~~~ii~a~TGsGKTl~~~l~il~~l~~ 96 (375)
.|.+..+|++++ +++.+.+++.+.||..|+++|.++++.++ .|+|+++++|||+|||++|++|++..+..
T Consensus 25 ~~~~~~~f~~l~------l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~----~~~~~li~apTGsGKT~~~~l~~l~~l~~ 94 (237)
T 3bor_A 25 WNEIVDNFDDMN------LKESLLRGIYAYGFEKPSAIQQRAIIPCI----KGYDVIAQAQSGTGKTATFAISILQQLEI 94 (237)
T ss_dssp --CCCCSGGGSC------CCHHHHHHHHHHTCCSCCHHHHHHHHHHH----TTCCEEECCCSSHHHHHHHHHHHHHHCCT
T ss_pred CCCccCChhhcC------CCHHHHHHHHHCCCCCCCHHHHHHHHHHh----CCCCEEEECCCCCcHHHHHHHHHHHHHHh
Confidence 356678899999 99999999999999999999999999887 57899999999999999999999998865
Q ss_pred cccCCceEEEEcccHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcC-CCcE
Q 017196 97 RAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQS-AVDI 175 (375)
Q Consensus 97 ~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~I 175 (375)
. ..+.++||++||++|+.|+++.++.++...++.+..++|+........ .+.. .++|
T Consensus 95 ~-~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---------------------~l~~~~~~I 152 (237)
T 3bor_A 95 E-FKETQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRNEMQ---------------------KLQAEAPHI 152 (237)
T ss_dssp T-SCSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECC----------------------------------CCCSE
T ss_pred c-CCCceEEEEECcHHHHHHHHHHHHHHhhhcCceEEEEECCCchHHHHH---------------------HHhcCCCCE
Confidence 4 245689999999999999999999999888888988888865443321 2333 3899
Q ss_pred EEeCcHHHHHHHhhcCCCCCCCccEEEEecchhhhhHhHHhHHHHHHHhhhccccccccccccccccccccccccccccc
Q 017196 176 LVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGV 255 (375)
Q Consensus 176 iV~Tp~~l~~~l~~~~~~~~~~~~~vIiDE~h~l~~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (375)
+|+||+++.+.+.+ +.+.+..+++||+||||++.+.+|...+..++..++.
T Consensus 153 lv~Tp~~l~~~l~~-~~~~~~~~~~lViDEah~~~~~~~~~~l~~i~~~~~~---------------------------- 203 (237)
T 3bor_A 153 VVGTPGRVFDMLNR-RYLSPKWIKMFVLDEADEMLSRGFKDQIYEIFQKLNT---------------------------- 203 (237)
T ss_dssp EEECHHHHHHHHHT-TSSCSTTCCEEEEESHHHHHHTTCHHHHHHHHHHSCT----------------------------
T ss_pred EEECHHHHHHHHHh-CCcCcccCcEEEECCchHhhccCcHHHHHHHHHhCCC----------------------------
Confidence 99999999999887 5577889999999999999988888888888777654
Q ss_pred ccCCCCCCCCceeEEEEEEecCCCchhhhccccCCCeEEecC
Q 017196 256 ERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTG 297 (375)
Q Consensus 256 ~~~~~~~~~~~~q~i~~SATl~~~~~~~~~~~~~~~~~i~~~ 297 (375)
+.|++++|||+++.+.++.+.++.+|..+.+.
T Consensus 204 ----------~~~~i~~SAT~~~~~~~~~~~~l~~p~~i~v~ 235 (237)
T 3bor_A 204 ----------SIQVVLLSATMPTDVLEVTKKFMRDPIRILVK 235 (237)
T ss_dssp ----------TCEEEEECSSCCHHHHHHHHHHCSSCEEEC--
T ss_pred ----------CCeEEEEEEecCHHHHHHHHHHCCCCEEEEec
Confidence 67899999999999999999999999887654
No 26
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=100.00 E-value=2.5e-34 Score=255.55 Aligned_cols=210 Identities=25% Similarity=0.417 Sum_probs=174.8
Q ss_pred CCccCccccCCCCCCCCCCHHHHHHHHhCCCCCccHhhHHHHHHhhCCCCCCCCEEEECCCCCchHHHhHHHHHHHhhhc
Q 017196 18 PVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNR 97 (375)
Q Consensus 18 ~~~~~~~~~~~~~~~~~l~~~i~~~l~~~g~~~~~~~Q~~~~~~~~~~~~~~~~~ii~a~TGsGKTl~~~l~il~~l~~~ 97 (375)
|.+..+|++++ +++.+.+.+.++|+..|+++|.++++.++ .|+|+++++|||+|||++|++|++..+...
T Consensus 10 ~~~~~~f~~l~------l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~----~~~~~lv~~pTGsGKT~~~~~~~l~~l~~~ 79 (224)
T 1qde_A 10 DKVVYKFDDME------LDENLLRGVFGYGFEEPSAIQQRAIMPII----EGHDVLAQAQSGTGKTGTFSIAALQRIDTS 79 (224)
T ss_dssp CCCCCCGGGGT------CCHHHHHHHHHHTCCSCCHHHHHHHHHHH----TTCCEEEECCTTSSHHHHHHHHHHHHCCTT
T ss_pred CcccCChhhcC------CCHHHHHHHHHCCCCCCcHHHHHHHHHHh----cCCCEEEECCCCCcHHHHHHHHHHHHHhcc
Confidence 55677899999 99999999999999999999999999887 578999999999999999999999988664
Q ss_pred ccCCceEEEEcccHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcCCCcEEE
Q 017196 98 AVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILV 177 (375)
Q Consensus 98 ~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiV 177 (375)
..++++||++||++|+.|+++.+++++...++++..++|+........ .+ .+++|+|
T Consensus 80 -~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---------------------~~-~~~~iiv 136 (224)
T 1qde_A 80 -VKAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAE---------------------GL-RDAQIVV 136 (224)
T ss_dssp -CCSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECC-------------------------------C-TTCSEEE
T ss_pred -CCCceEEEEECCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHh---------------------cC-CCCCEEE
Confidence 245689999999999999999999999888899999998876544321 12 2379999
Q ss_pred eCcHHHHHHHhhcCCCCCCCccEEEEecchhhhhHhHHhHHHHHHHhhhccccccccccccccccccccccccccccccc
Q 017196 178 ATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVER 257 (375)
Q Consensus 178 ~Tp~~l~~~l~~~~~~~~~~~~~vIiDE~h~l~~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (375)
+||+++.+.+.+ ....+..+++||+||||++.+.++...+..++..++.
T Consensus 137 ~Tp~~l~~~~~~-~~~~~~~~~~iViDEah~~~~~~~~~~l~~i~~~~~~------------------------------ 185 (224)
T 1qde_A 137 GTPGRVFDNIQR-RRFRTDKIKMFILDEADEMLSSGFKEQIYQIFTLLPP------------------------------ 185 (224)
T ss_dssp ECHHHHHHHHHT-TSSCCTTCCEEEEETHHHHHHTTCHHHHHHHHHHSCT------------------------------
T ss_pred ECHHHHHHHHHh-CCcchhhCcEEEEcChhHHhhhhhHHHHHHHHHhCCc------------------------------
Confidence 999999999887 4577889999999999999888888888888877654
Q ss_pred CCCCCCCCceeEEEEEEecCCCchhhhccccCCCeEEecCCc
Q 017196 258 GFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGET 299 (375)
Q Consensus 258 ~~~~~~~~~~q~i~~SATl~~~~~~~~~~~~~~~~~i~~~~~ 299 (375)
+.|++++|||+++.+.++.+.++.+|..+.+...
T Consensus 186 --------~~~~i~lSAT~~~~~~~~~~~~~~~p~~i~~~~~ 219 (224)
T 1qde_A 186 --------TTQVVLLSATMPNDVLEVTTKFMRNPVRILVKKD 219 (224)
T ss_dssp --------TCEEEEEESSCCHHHHHHHHHHCSSCEEEC----
T ss_pred --------cCeEEEEEeecCHHHHHHHHHHCCCCEEEEecCC
Confidence 6689999999999999999999999988876544
No 27
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=100.00 E-value=1.8e-33 Score=249.29 Aligned_cols=208 Identities=24% Similarity=0.374 Sum_probs=173.9
Q ss_pred CCccCccccCCCCCCCCCCHHHHHHHHhCCCCCccHhhHHHHHHhhCCCCCCCCEEEECCCCCchHHHhHHHHHHHhhhc
Q 017196 18 PVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNR 97 (375)
Q Consensus 18 ~~~~~~~~~~~~~~~~~l~~~i~~~l~~~g~~~~~~~Q~~~~~~~~~~~~~~~~~ii~a~TGsGKTl~~~l~il~~l~~~ 97 (375)
+.+.++|++++ +++.+.+++.+.|+..|+++|.++++.++ +++|+++++|||+|||++|+++++..+...
T Consensus 10 ~~~~~~f~~~~------l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~----~~~~~li~~~TGsGKT~~~~~~~~~~~~~~ 79 (220)
T 1t6n_A 10 SIHSSGFRDFL------LKPELLRAIVDCGFEHPSEVQHECIPQAI----LGMDVLCQAKSGMGKTAVFVLATLQQLEPV 79 (220)
T ss_dssp ----CCSTTSC------CCHHHHHHHHHTTCCCCCHHHHHHHHHHH----TTCCEEEECCTTSCHHHHHHHHHHHHCCCC
T ss_pred cccCCCHhhcC------CCHHHHHHHHHCCCCCCCHHHHHHHHHHh----CCCCEEEECCCCCchhhhhhHHHHHhhhcc
Confidence 34556788888 99999999999999999999999999888 578999999999999999999999988654
Q ss_pred ccCCceEEEEcccHHHHHHHHHHHHHhcccc-CceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcCCCcEE
Q 017196 98 AVRCLRALVVLPTRDLALQVKDVFAAIAPAV-GLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDIL 176 (375)
Q Consensus 98 ~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ii 176 (375)
. .++++||++||++|+.|+++.++++.... ++++..++|+.........+ ....++|+
T Consensus 80 ~-~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~--------------------~~~~~~i~ 138 (220)
T 1t6n_A 80 T-GQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVL--------------------KKNCPHIV 138 (220)
T ss_dssp T-TCCCEEEECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHHHH--------------------HHSCCSEE
T ss_pred C-CCEEEEEEeCCHHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHHHHH--------------------hcCCCCEE
Confidence 2 34589999999999999999999998766 78999999987765543311 12357999
Q ss_pred EeCcHHHHHHHhhcCCCCCCCccEEEEecchhhhh-HhHHhHHHHHHHhhhccccccccccccccccccccccccccccc
Q 017196 177 VATPGRLMDHINATRGFTLEHLCYLVVDETDRLLR-EAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGV 255 (375)
Q Consensus 177 V~Tp~~l~~~l~~~~~~~~~~~~~vIiDE~h~l~~-~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (375)
|+||+++.+.+.+ ..+.+..++++|+||||++.+ .++...+..++..++.
T Consensus 139 v~T~~~l~~~~~~-~~~~~~~~~~lViDEah~~~~~~~~~~~~~~i~~~~~~---------------------------- 189 (220)
T 1t6n_A 139 VGTPGRILALARN-KSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPH---------------------------- 189 (220)
T ss_dssp EECHHHHHHHHHT-TSSCCTTCCEEEEESHHHHHSSHHHHHHHHHHHHTSCS----------------------------
T ss_pred EeCHHHHHHHHHh-CCCCcccCCEEEEcCHHHHhcccCcHHHHHHHHHhCCC----------------------------
Confidence 9999999999887 557789999999999999986 5777777777766544
Q ss_pred ccCCCCCCCCceeEEEEEEecCCCchhhhccccCCCeEEe
Q 017196 256 ERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLT 295 (375)
Q Consensus 256 ~~~~~~~~~~~~q~i~~SATl~~~~~~~~~~~~~~~~~i~ 295 (375)
+.|++++|||++..+.++.+.++.+|..+.
T Consensus 190 ----------~~~~i~~SAT~~~~~~~~~~~~~~~p~~i~ 219 (220)
T 1t6n_A 190 ----------EKQVMMFSATLSKEIRPVCRKFMQDPMEIF 219 (220)
T ss_dssp ----------SSEEEEEESCCCTTTHHHHHTTCSSCEEEE
T ss_pred ----------cCeEEEEEeecCHHHHHHHHHHcCCCeEEe
Confidence 568999999999999999999999988764
No 28
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=100.00 E-value=9.4e-35 Score=261.95 Aligned_cols=218 Identities=27% Similarity=0.475 Sum_probs=179.9
Q ss_pred cCCCCccCccccC----CCCCCCCCCHHHHHHHHhCCCCCccHhhHHHHHHhhCCCCCCCCEEEECCCCCchHHHhHHHH
Q 017196 15 MRSPVDVSLFEDC----PLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPI 90 (375)
Q Consensus 15 ~~~~~~~~~~~~~----~~~~~~~l~~~i~~~l~~~g~~~~~~~Q~~~~~~~~~~~~~~~~~ii~a~TGsGKTl~~~l~i 90 (375)
...|.+..+|+++ + +++.+.+.+.+.||..|+++|.++++.++ .|+|+++.+|||+|||++|++|+
T Consensus 18 ~~~p~~~~~f~~l~~~~~------l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~----~~~~~l~~a~TGsGKT~~~~l~~ 87 (245)
T 3dkp_A 18 TDLPDPIATFQQLDQEYK------INSRLLQNILDAGFQMPTPIQMQAIPVML----HGRELLASAPTGSGKTLAFSIPI 87 (245)
T ss_dssp SSCCCCCSSHHHHHHHHC------CCHHHHHHHHHTTCCSCCHHHHHHHHHHH----TTCCEEEECCTTSCHHHHHHHHH
T ss_pred CCCCCcccCHHHhhhccC------CCHHHHHHHHHCCCCCCCHHHHHHHHHHh----CCCCEEEECCCCCcHHHHHHHHH
Confidence 4568888899887 6 99999999999999999999999999887 58999999999999999999999
Q ss_pred HHHhhhcccCCceEEEEcccHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhc
Q 017196 91 VQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQ 170 (375)
Q Consensus 91 l~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (375)
+..+......++++||++||++|+.|+++.+++++...++.+..++|+...... ......
T Consensus 88 l~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~ 147 (245)
T 3dkp_A 88 LMQLKQPANKGFRALIISPTRELASQIHRELIKISEGTGFRIHMIHKAAVAAKK--------------------FGPKSS 147 (245)
T ss_dssp HHHHCSCCSSSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEECCCHHHHHHTT--------------------TSTTSC
T ss_pred HHHHhhcccCCceEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEecCccHHHH--------------------hhhhhc
Confidence 999977555667899999999999999999999998888888877765432111 011234
Q ss_pred CCCcEEEeCcHHHHHHHhhcC-CCCCCCccEEEEecchhhhhH---hHHhHHHHHHHhhhcccccccccccccccccccc
Q 017196 171 SAVDILVATPGRLMDHINATR-GFTLEHLCYLVVDETDRLLRE---AYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGS 246 (375)
Q Consensus 171 ~~~~IiV~Tp~~l~~~l~~~~-~~~~~~~~~vIiDE~h~l~~~---~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~ 246 (375)
.+++|+|+||+++.+++.... .+.++++++||+||||++.+. +|...+..++..+..
T Consensus 148 ~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~~~~i~~~~~~------------------- 208 (245)
T 3dkp_A 148 KKFDILVTTPNRLIYLLKQDPPGIDLASVEWLVVDESDKLFEDGKTGFRDQLASIFLACTS------------------- 208 (245)
T ss_dssp CCCCEEEECHHHHHHHHHSSSCSCCCTTCCEEEESSHHHHHHHC--CHHHHHHHHHHHCCC-------------------
T ss_pred CCCCEEEECHHHHHHHHHhCCCCcccccCcEEEEeChHHhcccccccHHHHHHHHHHhcCC-------------------
Confidence 578999999999999998743 467889999999999999885 465555555544322
Q ss_pred cccccccccccCCCCCCCCceeEEEEEEecCCCchhhhccccCCCeEEecCCc
Q 017196 247 LKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGET 299 (375)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~~~~~~~~~~~~~~~i~~~~~ 299 (375)
.+.|+++||||++.++..+.+.++.+|..+.++..
T Consensus 209 ------------------~~~~~~~~SAT~~~~v~~~~~~~l~~p~~i~~~~~ 243 (245)
T 3dkp_A 209 ------------------HKVRRAMFSATFAYDVEQWCKLNLDNVISVSIGAR 243 (245)
T ss_dssp ------------------TTCEEEEEESSCCHHHHHHHHHHSSSCEEEEECC-
T ss_pred ------------------CCcEEEEEeccCCHHHHHHHHHhCCCCEEEEeCCC
Confidence 15689999999999999999999999999887654
No 29
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=100.00 E-value=2.7e-34 Score=261.68 Aligned_cols=194 Identities=32% Similarity=0.504 Sum_probs=170.2
Q ss_pred CCHHHHHHHHhCCCCCccHhhHHHHHHhhCCCCCCCCEEEECCCCCchHHHhHHHHHHHhhhcc---cCCceEEEEcccH
Q 017196 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRA---VRCLRALVVLPTR 111 (375)
Q Consensus 35 l~~~i~~~l~~~g~~~~~~~Q~~~~~~~~~~~~~~~~~ii~a~TGsGKTl~~~l~il~~l~~~~---~~~~~~lil~Pt~ 111 (375)
+++.+.+.+.++||..|+++|.++++.++ .|+|+++++|||+|||++|++|++..+.+.. ..+.++||++||+
T Consensus 61 l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~----~~~~~lv~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~lil~Pt~ 136 (262)
T 3ly5_A 61 VNENTLKAIKEMGFTNMTEIQHKSIRPLL----EGRDLLAAAKTGSGKTLAFLIPAVELIVKLRFMPRNGTGVLILSPTR 136 (262)
T ss_dssp CCHHHHHHHHHTTCCBCCHHHHHHHHHHH----HTCCCEECCCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEECSSH
T ss_pred cCHHHHHHHHHCCCCCCCHHHHHHHHHHh----CCCcEEEEccCCCCchHHHHHHHHHHHHhccccccCCceEEEEeCCH
Confidence 89999999999999999999999998887 5789999999999999999999999887622 2456799999999
Q ss_pred HHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcCCCcEEEeCcHHHHHHHhhcC
Q 017196 112 DLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATR 191 (375)
Q Consensus 112 ~L~~Q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiV~Tp~~l~~~l~~~~ 191 (375)
+|+.|+++.+++++...+..+..++|+........ .+..+++|+|+||+++.+.+....
T Consensus 137 ~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---------------------~~~~~~~Iiv~Tp~~l~~~~~~~~ 195 (262)
T 3ly5_A 137 ELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQ---------------------KLGNGINIIVATPGRLLDHMQNTP 195 (262)
T ss_dssp HHHHHHHHHHHHHTTTCCSCEEEECSSSCHHHHHH---------------------HHHHCCSEEEECHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHhhcCceEEEEECCCCHHHHHH---------------------HhcCCCCEEEEcHHHHHHHHHccC
Confidence 99999999999999888899999999887655533 344568999999999999998866
Q ss_pred CCCCCCccEEEEecchhhhhHhHHhHHHHHHHhhhcccccccccccccccccccccccccccccccCCCCCCCCceeEEE
Q 017196 192 GFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMV 271 (375)
Q Consensus 192 ~~~~~~~~~vIiDE~h~l~~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~ 271 (375)
.+.++.+++||+||||++.+.+|...+..++..++. +.|+++
T Consensus 196 ~~~~~~l~~lViDEah~l~~~~~~~~l~~i~~~~~~--------------------------------------~~q~l~ 237 (262)
T 3ly5_A 196 GFMYKNLQCLVIDEADRILDVGFEEELKQIIKLLPT--------------------------------------RRQTML 237 (262)
T ss_dssp TCCCTTCCEEEECSHHHHHHTTCHHHHHHHHHHSCS--------------------------------------SSEEEE
T ss_pred CcccccCCEEEEcChHHHhhhhHHHHHHHHHHhCCC--------------------------------------CCeEEE
Confidence 678899999999999999998899889999888765 668999
Q ss_pred EEEecCCCchhhhccccCCC
Q 017196 272 LSATLTQDPNKLAQLDLHHP 291 (375)
Q Consensus 272 ~SATl~~~~~~~~~~~~~~~ 291 (375)
||||++..+..+++.++.++
T Consensus 238 ~SAT~~~~v~~~~~~~l~~~ 257 (262)
T 3ly5_A 238 FSATQTRKVEDLARISLKKE 257 (262)
T ss_dssp ECSSCCHHHHHHHHHHCSSC
T ss_pred EEecCCHHHHHHHHHHcCCC
Confidence 99999999999988887644
No 30
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=100.00 E-value=1e-33 Score=248.29 Aligned_cols=203 Identities=33% Similarity=0.484 Sum_probs=174.1
Q ss_pred ccccCCCCCCCCCCHHHHHHHHhCCCCCccHhhHHHHHHhhCCCCCCCCEEEECCCCCchHHHhHHHHHHHhhhc--ccC
Q 017196 23 LFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNR--AVR 100 (375)
Q Consensus 23 ~~~~~~~~~~~~l~~~i~~~l~~~g~~~~~~~Q~~~~~~~~~~~~~~~~~ii~a~TGsGKTl~~~l~il~~l~~~--~~~ 100 (375)
+|++++ +++++.+.+.+.|+..|+++|.++++.++ +|+++++++|||+|||++|+++++..+... ...
T Consensus 2 ~f~~~~------l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~----~~~~~li~~~TGsGKT~~~~~~~~~~l~~~~~~~~ 71 (207)
T 2gxq_A 2 EFKDFP------LKPEILEALHGRGLTTPTPIQAAALPLAL----EGKDLIGQARTGTGKTLAFALPIAERLAPSQERGR 71 (207)
T ss_dssp CGGGSC------CCHHHHHHHHHTTCCSCCHHHHHHHHHHH----TTCCEEEECCTTSCHHHHHHHHHHHHCCCCCCTTC
T ss_pred ChhhcC------CCHHHHHHHHHcCCCCCCHHHHHHHHHHc----CCCCEEEECCCCChHHHHHHHHHHHHHhhccccCC
Confidence 588888 99999999999999999999999999887 579999999999999999999999988653 124
Q ss_pred CceEEEEcccHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcCCCcEEEeCc
Q 017196 101 CLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATP 180 (375)
Q Consensus 101 ~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiV~Tp 180 (375)
+++++|++||++|+.|+++.+++++.. +++..++|+........ .+..+++|+|+||
T Consensus 72 ~~~~lil~P~~~L~~q~~~~~~~~~~~--~~~~~~~~~~~~~~~~~---------------------~~~~~~~i~v~T~ 128 (207)
T 2gxq_A 72 KPRALVLTPTRELALQVASELTAVAPH--LKVVAVYGGTGYGKQKE---------------------ALLRGADAVVATP 128 (207)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHCTT--SCEEEECSSSCSHHHHH---------------------HHHHCCSEEEECH
T ss_pred CCcEEEEECCHHHHHHHHHHHHHHhhc--ceEEEEECCCChHHHHH---------------------HhhCCCCEEEECH
Confidence 568999999999999999999999874 77888888876544432 3345689999999
Q ss_pred HHHHHHHhhcCCCCCCCccEEEEecchhhhhHhHHhHHHHHHHhhhcccccccccccccccccccccccccccccccCCC
Q 017196 181 GRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFK 260 (375)
Q Consensus 181 ~~l~~~l~~~~~~~~~~~~~vIiDE~h~l~~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (375)
+++.+.+.+ ..+.+..+++||+||||++.+.++...+..++..++.
T Consensus 129 ~~l~~~~~~-~~~~~~~~~~iViDEah~~~~~~~~~~~~~i~~~~~~--------------------------------- 174 (207)
T 2gxq_A 129 GRALDYLRQ-GVLDLSRVEVAVLDEADEMLSMGFEEEVEALLSATPP--------------------------------- 174 (207)
T ss_dssp HHHHHHHHH-TSSCCTTCSEEEEESHHHHHHTTCHHHHHHHHHTSCT---------------------------------
T ss_pred HHHHHHHHc-CCcchhhceEEEEEChhHhhccchHHHHHHHHHhCCc---------------------------------
Confidence 999999987 5577899999999999999888888888888776654
Q ss_pred CCCCCceeEEEEEEecCCCchhhhccccCCCeEEecC
Q 017196 261 DKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTG 297 (375)
Q Consensus 261 ~~~~~~~q~i~~SATl~~~~~~~~~~~~~~~~~i~~~ 297 (375)
+.|++++|||+++.+.++.+.++.+|..+.+.
T Consensus 175 -----~~~~i~~SAT~~~~~~~~~~~~~~~p~~i~~~ 206 (207)
T 2gxq_A 175 -----SRQTLLFSATLPSWAKRLAERYMKNPVLINVI 206 (207)
T ss_dssp -----TSEEEEECSSCCHHHHHHHHHHCSSCEEEECC
T ss_pred -----cCeEEEEEEecCHHHHHHHHHHcCCCeEEEcC
Confidence 56899999999998999999999999887653
No 31
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=100.00 E-value=2.2e-32 Score=265.13 Aligned_cols=262 Identities=16% Similarity=0.203 Sum_probs=189.3
Q ss_pred HHHHHHHHh-CCCCCccHhhHHHHHHhhCCCCCCCCEEEECCCCCchHHHhHHHHHHHhhhcccCCceEEEEcccHHHHH
Q 017196 37 PRLKVALQN-MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLAL 115 (375)
Q Consensus 37 ~~i~~~l~~-~g~~~~~~~Q~~~~~~~~~~~~~~~~~ii~a~TGsGKTl~~~l~il~~l~~~~~~~~~~lil~Pt~~L~~ 115 (375)
+++.+.+++ +|+ +|+|+|.++++.++ .|+|+++++|||+|||++|+++++.... .++++||++||++|+.
T Consensus 8 ~~~~~~l~~~~~~-~~~~~Q~~~i~~i~----~~~~~lv~apTGsGKT~~~l~~~~~~~~----~~~~~lil~Pt~~L~~ 78 (414)
T 3oiy_A 8 EDFRSFFKKKFGK-DLTGYQRLWAKRIV----QGKSFTMVAPTGVGKTTFGMMTALWLAR----KGKKSALVFPTVTLVK 78 (414)
T ss_dssp HHHHHHHHHHHSS-CCCHHHHHHHHHHT----TTCCEECCSCSSSSHHHHHHHHHHHHHT----TTCCEEEEESSHHHHH
T ss_pred HHHHHHHHHhcCC-CCCHHHHHHHHHHh----cCCCEEEEeCCCCCHHHHHHHHHHHHhc----CCCEEEEEECCHHHHH
Confidence 355666665 576 89999999998887 5889999999999999999999887662 3458999999999999
Q ss_pred HHHHHHHHhccccCceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcCC-CcEEEeCcHHHHHHHhhcCCCC
Q 017196 116 QVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSA-VDILVATPGRLMDHINATRGFT 194 (375)
Q Consensus 116 Q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~IiV~Tp~~l~~~l~~~~~~~ 194 (375)
|+++.++.++. .++++..++|+....... ++...+..+ ++|+|+||+++.+.+.. +.
T Consensus 79 q~~~~~~~~~~-~~~~v~~~~g~~~~~~~~------------------~~~~~l~~~~~~Iiv~Tp~~l~~~l~~---~~ 136 (414)
T 3oiy_A 79 QTLERLQKLAD-EKVKIFGFYSSMKKEEKE------------------KFEKSFEEDDYHILVFSTQFVSKNREK---LS 136 (414)
T ss_dssp HHHHHHHHHCC-SSCCEEECCTTSCHHHHH------------------HHHHHHHHTCCSEEEEEHHHHHHCHHH---HT
T ss_pred HHHHHHHHHcc-CCceEEEEECCCChhhHH------------------HHHHHhhcCCCCEEEECHHHHHHHHHH---hc
Confidence 99999999988 789999999998764331 122234344 89999999999988875 56
Q ss_pred CCCccEEEEecchhhhh-----------HhHHhH-HHHHHHhhhcccccccccccccccccccccccccccccccCCCCC
Q 017196 195 LEHLCYLVVDETDRLLR-----------EAYQAW-LPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDK 262 (375)
Q Consensus 195 ~~~~~~vIiDE~h~l~~-----------~~~~~~-l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (375)
+.++++||+||||++.. .+|... +..++..++..... .+ -.
T Consensus 137 ~~~~~~iViDEaH~~~~~~~~~d~~l~~~~~~~~~~~~i~~~~~~~~~~-------------------~~--------l~ 189 (414)
T 3oiy_A 137 QKRFDFVFVDDVDAVLKASRNIDTLLMMVGIPEEIIRKAFSTIKQGKIY-------------------ER--------PK 189 (414)
T ss_dssp TCCCSEEEESCHHHHHHCHHHHHHHHHHTTCCHHHHHHHHHHHHHTCCC-------------------CC--------CT
T ss_pred cccccEEEEeChHhhhhccchhhhHHhhcCCcHHHHHHHHHhcccchhh-------------------hh--------cc
Confidence 67899999999998764 334444 66666666521000 00 00
Q ss_pred CCCceeEEEEEEe-cCCCchh-hhccccCCCeEEecCCccccCcccceeEEEeccCCCcHHHHHHHHHhcCCCeEEEEcC
Q 017196 263 PYPRLVKMVLSAT-LTQDPNK-LAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTS 340 (375)
Q Consensus 263 ~~~~~q~i~~SAT-l~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~k~lIF~~ 340 (375)
...+.|++++||| .+..... +....+. +...... .....+.+.+..+ .+...+.++++.. ++++||||+
T Consensus 190 ~~~~~~~i~~SAT~~~~~~~~~~~~~~~~----~~~~~~~-~~~~~i~~~~~~~---~~~~~l~~~l~~~-~~~~lVF~~ 260 (414)
T 3oiy_A 190 NLKPGILVVSSATAKPRGIRPLLFRDLLN----FTVGRLV-SVARNITHVRISS---RSKEKLVELLEIF-RDGILIFAQ 260 (414)
T ss_dssp TCCCCEEEESSCCSSCCSSTTHHHHHHHS----CCSSCCC-CCCCSEEEEEESS---CCHHHHHHHHHHH-CSSEEEEES
T ss_pred cCCCceEEEEecCCCcchhHHHHHHHhhc----cCcCccc-cccccchheeecc---CHHHHHHHHHHHc-CCCEEEEEC
Confidence 0126789999999 5555442 2222221 1111111 2334566665544 5777888888874 478999999
Q ss_pred ChhhHHHHHHHHHHhcCCcceEE-ecccc
Q 017196 341 SVESTHRLCTLLNHFGELRIKIK-EYSGL 368 (375)
Q Consensus 341 s~~~a~~l~~~L~~~g~~~~~~~-~lh~~ 368 (375)
++++|+.+++.|+..| +.+. .+||+
T Consensus 261 ~~~~~~~l~~~L~~~~---~~~~~~~h~~ 286 (414)
T 3oiy_A 261 TEEEGKELYEYLKRFK---FNVGETWSEF 286 (414)
T ss_dssp SHHHHHHHHHHHHHTT---CCEEESSSCH
T ss_pred CHHHHHHHHHHHHHcC---CceehhhcCc
Confidence 9999999999999654 8898 99985
No 32
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=100.00 E-value=2.8e-32 Score=274.54 Aligned_cols=260 Identities=20% Similarity=0.214 Sum_probs=189.7
Q ss_pred CCHHHHHHHHh-CCCCCccHhhHHHHHHhhCCCCCCCCEEEECCCCCchHHHhHHHHHHHhhhcccCCceEEEEcccHHH
Q 017196 35 LDPRLKVALQN-MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDL 113 (375)
Q Consensus 35 l~~~i~~~l~~-~g~~~~~~~Q~~~~~~~~~~~~~~~~~ii~a~TGsGKTl~~~l~il~~l~~~~~~~~~~lil~Pt~~L 113 (375)
+++.+.+.|++ +||..|+|+|.++++.++ .|+|+++.+|||+|||++|++|++.. ..++|||+|+++|
T Consensus 28 l~~~l~~~L~~~fg~~~~rp~Q~~~i~~il----~g~d~lv~~pTGsGKTl~~~lpal~~-------~g~~lVisP~~~L 96 (591)
T 2v1x_A 28 WSGKVKDILQNVFKLEKFRPLQLETINVTM----AGKEVFLVMPTGGGKSLCYQLPALCS-------DGFTLVICPLISL 96 (591)
T ss_dssp THHHHHHHHHHTSCCCSCCTTHHHHHHHHH----TTCCEEEECCTTSCTTHHHHHHHHTS-------SSEEEEECSCHHH
T ss_pred CCHHHHHHHHHHhCCCCCCHHHHHHHHHHH----cCCCEEEEECCCChHHHHHHHHHHHc-------CCcEEEEeCHHHH
Confidence 89999999998 799999999999999888 58999999999999999999999752 2479999999999
Q ss_pred HHHHHHHHHHhccccCceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHh---hcCCCcEEEeCcHHHH------
Q 017196 114 ALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQE---LQSAVDILVATPGRLM------ 184 (375)
Q Consensus 114 ~~Q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~IiV~Tp~~l~------ 184 (375)
+.|+.+.++++ ++++..++|+........ .... ...+++|+|+||++|.
T Consensus 97 ~~q~~~~l~~~----gi~~~~l~~~~~~~~~~~------------------~~~~l~~~~~~~~Ilv~Tpe~L~~~~~~~ 154 (591)
T 2v1x_A 97 MEDQLMVLKQL----GISATMLNASSSKEHVKW------------------VHAEMVNKNSELKLIYVTPEKIAKSKMFM 154 (591)
T ss_dssp HHHHHHHHHHH----TCCEEECCSSCCHHHHHH------------------HHHHHHCTTCCCCEEEECHHHHHSCHHHH
T ss_pred HHHHHHHHHhc----CCcEEEEeCCCCHHHHHH------------------HHHHhhcccCCCCEEEEChhHhhccHHHH
Confidence 99999999987 788889998876554422 1112 2457899999999874
Q ss_pred HHHhhcCCCCCCCccEEEEecchhhhhHh--HHhHHHH---HHHhhhcccccccccccccccccccccccccccccccCC
Q 017196 185 DHINATRGFTLEHLCYLVVDETDRLLREA--YQAWLPT---VLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGF 259 (375)
Q Consensus 185 ~~l~~~~~~~~~~~~~vIiDE~h~l~~~~--~~~~l~~---i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (375)
+.+.. ...+..+++|||||||++.+++ |...+.. +...+
T Consensus 155 ~~l~~--~~~~~~i~~iViDEAH~is~~g~dfr~~~~~l~~l~~~~---------------------------------- 198 (591)
T 2v1x_A 155 SRLEK--AYEARRFTRIAVDEVHCCSQWGHDFRPDYKALGILKRQF---------------------------------- 198 (591)
T ss_dssp HHHHH--HHHTTCEEEEEEETGGGGSTTCTTCCGGGGGGGHHHHHC----------------------------------
T ss_pred HHHHh--hhhccCCcEEEEECcccccccccccHHHHHHHHHHHHhC----------------------------------
Confidence 22222 2346789999999999998765 4444332 22221
Q ss_pred CCCCCCceeEEEEEEecCCCchhhhccccC--CCeEEecCCccccCcccceeEEEeccC--CCcHHHHHHHHHhc-CCCe
Q 017196 260 KDKPYPRLVKMVLSATLTQDPNKLAQLDLH--HPLFLTTGETRYKLPERLESYKLICES--KLKPLYLVALLQSL-GEEK 334 (375)
Q Consensus 260 ~~~~~~~~q~i~~SATl~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~~i~~~~~~~~~--~~k~~~l~~ll~~~-~~~k 334 (375)
++.+++++|||++..+...+..++. .+..+..... ..++......... ..+...+.++++.. .+++
T Consensus 199 -----~~~~ii~lSAT~~~~v~~~i~~~l~~~~~~~~~~~~~----r~nl~~~v~~~~~~~~~~~~~l~~~l~~~~~~~~ 269 (591)
T 2v1x_A 199 -----PNASLIGLTATATNHVLTDAQKILCIEKCFTFTASFN----RPNLYYEVRQKPSNTEDFIEDIVKLINGRYKGQS 269 (591)
T ss_dssp -----TTSEEEEEESSCCHHHHHHHHHHTTCCSCEEEECCCC----CTTEEEEEEECCSSHHHHHHHHHHHHTTTTTTCE
T ss_pred -----CCCcEEEEecCCCHHHHHHHHHHhCCCCcEEEecCCC----CcccEEEEEeCCCcHHHHHHHHHHHHHHhccCCC
Confidence 1467999999998766555555443 3333332221 1233222221111 12345566666543 5679
Q ss_pred EEEEcCChhhHHHHHHHHHHhcCCcceEEeccccccccccC
Q 017196 335 CIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRR 375 (375)
Q Consensus 335 ~lIF~~s~~~a~~l~~~L~~~g~~~~~~~~lh~~~~~~~R~ 375 (375)
+||||+|+++|+.+++.|+..| +.+..+||+|+..+|+
T Consensus 270 ~IVf~~sr~~~e~la~~L~~~g---~~~~~~h~~l~~~~R~ 307 (591)
T 2v1x_A 270 GIIYCFSQKDSEQVTVSLQNLG---IHAGAYHANLEPEDKT 307 (591)
T ss_dssp EEEECSSHHHHHHHHHHHHHTT---CCEEEECTTSCHHHHH
T ss_pred eEEEeCcHHHHHHHHHHHHHCC---CCEEEecCCCCHHHHH
Confidence 9999999999999999999654 8999999999998873
No 33
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=100.00 E-value=3.9e-32 Score=270.44 Aligned_cols=270 Identities=21% Similarity=0.237 Sum_probs=198.3
Q ss_pred CccccCCCCCCCCCCHHHHHHHHh-CCCCCccHhhHHHHHHhhCCCCCCCCEEEECCCCCchHHHhHHHHHHHhhhcccC
Q 017196 22 SLFEDCPLDHLPCLDPRLKVALQN-MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVR 100 (375)
Q Consensus 22 ~~~~~~~~~~~~~l~~~i~~~l~~-~g~~~~~~~Q~~~~~~~~~~~~~~~~~ii~a~TGsGKTl~~~l~il~~l~~~~~~ 100 (375)
.+|++++ +++.+.+.|.+ +|+..|+|+|.++++.++ .|+|+++.+|||+|||++|++|++..
T Consensus 2 ~~fe~l~------L~~~~~~~l~~~~g~~~~r~~Q~~~i~~il----~g~d~lv~apTGsGKTl~~~lp~l~~------- 64 (523)
T 1oyw_A 2 AQAEVLN------LESGAKQVLQETFGYQQFRPGQEEIIDTVL----SGRDCLVVMPTGGGKSLCYQIPALLL------- 64 (523)
T ss_dssp CCCCCSS------HHHHHHHHHHHTTCCSSCCTTHHHHHHHHH----TTCCEEEECSCHHHHHHHHHHHHHHS-------
T ss_pred CChhhCC------CCHHHHHHHHHHhCCCCCCHHHHHHHHHHH----cCCCEEEECCCCcHHHHHHHHHHHHh-------
Confidence 3677777 99999999998 899999999999999888 58899999999999999999999742
Q ss_pred CceEEEEcccHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcCCCcEEEeCc
Q 017196 101 CLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATP 180 (375)
Q Consensus 101 ~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiV~Tp 180 (375)
..++||++|+++|+.|+.+.++++ ++.+..++++......... ......+.++|+++||
T Consensus 65 ~g~~lvi~P~~aL~~q~~~~l~~~----gi~~~~l~~~~~~~~~~~~-----------------~~~~~~~~~~ilv~Tp 123 (523)
T 1oyw_A 65 NGLTVVVSPLISLMKDQVDQLQAN----GVAAACLNSTQTREQQLEV-----------------MTGCRTGQIRLLYIAP 123 (523)
T ss_dssp SSEEEEECSCHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHH-----------------HHHHHHTCCSEEEECH
T ss_pred CCCEEEECChHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHH-----------------HHHHhcCCCCEEEECH
Confidence 236999999999999999999875 6788888887765443211 1112235689999999
Q ss_pred HHHHHHHhhcCCCCCCCccEEEEecchhhhhHh--HHhHHHHHHHhhhcccccccccccccccccccccccccccccccC
Q 017196 181 GRLMDHINATRGFTLEHLCYLVVDETDRLLREA--YQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERG 258 (375)
Q Consensus 181 ~~l~~~l~~~~~~~~~~~~~vIiDE~h~l~~~~--~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (375)
+++...... ..+....+++|||||||++.+++ |...+..+.......
T Consensus 124 e~l~~~~~~-~~l~~~~~~~vViDEaH~i~~~g~~fr~~~~~l~~l~~~~------------------------------ 172 (523)
T 1oyw_A 124 ERLMLDNFL-EHLAHWNPVLLAVDEAHCISQWGHDFRPEYAALGQLRQRF------------------------------ 172 (523)
T ss_dssp HHHTSTTHH-HHHTTSCEEEEEESSGGGGCTTSSCCCHHHHGGGGHHHHC------------------------------
T ss_pred HHHhChHHH-HHHhhCCCCEEEEeCccccCcCCCccHHHHHHHHHHHHhC------------------------------
Confidence 998532111 11334788999999999997765 444333332222111
Q ss_pred CCCCCCCceeEEEEEEecCCCchhh-hc-cccCCCeEEecCCccccCcccceeEEEeccCCCcHHHHHHHHHhcCCCeEE
Q 017196 259 FKDKPYPRLVKMVLSATLTQDPNKL-AQ-LDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCI 336 (375)
Q Consensus 259 ~~~~~~~~~q~i~~SATl~~~~~~~-~~-~~~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~k~l 336 (375)
++.+++++|||++...... .. ..+.++..+...... .++ .+.......+...+.++++...++++|
T Consensus 173 ------~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~r----~~l--~~~v~~~~~~~~~l~~~l~~~~~~~~I 240 (523)
T 1oyw_A 173 ------PTLPFMALTATADDTTRQDIVRLLGLNDPLIQISSFDR----PNI--RYMLMEKFKPLDQLMRYVQEQRGKSGI 240 (523)
T ss_dssp ------TTSCEEEEESCCCHHHHHHHHHHHTCCSCEEEECCCCC----TTE--EEEEEECSSHHHHHHHHHHHTTTCCEE
T ss_pred ------CCCCEEEEeCCCCHHHHHHHHHHhCCCCCeEEeCCCCC----Cce--EEEEEeCCCHHHHHHHHHHhcCCCcEE
Confidence 1457899999998754432 22 223455444332221 233 233344567778888888887788999
Q ss_pred EEcCChhhHHHHHHHHHHhcCCcceEEeccccccccccC
Q 017196 337 VFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRR 375 (375)
Q Consensus 337 IF~~s~~~a~~l~~~L~~~g~~~~~~~~lh~~~~~~~R~ 375 (375)
|||+|+++|+.+++.|+..| +.+..+||+|+.++|+
T Consensus 241 Vf~~sr~~~e~l~~~L~~~g---~~~~~~h~~l~~~~R~ 276 (523)
T 1oyw_A 241 IYCNSRAKVEDTAARLQSKG---ISAAAYHAGLENNVRA 276 (523)
T ss_dssp EECSSHHHHHHHHHHHHHTT---CCEEEECTTSCHHHHH
T ss_pred EEeCCHHHHHHHHHHHHHCC---CCEEEecCCCCHHHHH
Confidence 99999999999999999654 8999999999998873
No 34
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=99.97 E-value=1.7e-31 Score=276.23 Aligned_cols=268 Identities=21% Similarity=0.244 Sum_probs=198.8
Q ss_pred ccccCCCCCCCCCCHHHHHHHHhCCCCCccHhhHHHHHHhhCCCCCCCCEEEECCCCCchHHHhHHHHHHHhhhcccCCc
Q 017196 23 LFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCL 102 (375)
Q Consensus 23 ~~~~~~~~~~~~l~~~i~~~l~~~g~~~~~~~Q~~~~~~~~~~~~~~~~~ii~a~TGsGKTl~~~l~il~~l~~~~~~~~ 102 (375)
+|++++ +++.+.+.+.+.||.+|+++|.++++.++ ..++++++++|||||||++|.+++++.+... +.
T Consensus 2 ~f~~l~------l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~---~~~~~~lv~apTGsGKT~~~~l~il~~~~~~---~~ 69 (720)
T 2zj8_A 2 RVDELR------VDERIKSTLKERGIESFYPPQAEALKSGI---LEGKNALISIPTASGKTLIAEIAMVHRILTQ---GG 69 (720)
T ss_dssp BGGGCC------SCHHHHHHHHHTTCCBCCHHHHHHHTTTG---GGTCEEEEECCGGGCHHHHHHHHHHHHHHHH---CS
T ss_pred cHhhcC------CCHHHHHHHHHCCCCCCCHHHHHHHHHHh---cCCCcEEEEcCCccHHHHHHHHHHHHHHHhC---CC
Confidence 578888 99999999999999999999999976522 3689999999999999999999999888643 24
Q ss_pred eEEEEcccHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcCCCcEEEeCcHH
Q 017196 103 RALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGR 182 (375)
Q Consensus 103 ~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiV~Tp~~ 182 (375)
+++|++|+++|+.|+++.++.+.. .++++..++|+...... ...+++|+|+||++
T Consensus 70 ~~l~i~P~raLa~q~~~~~~~l~~-~g~~v~~~~G~~~~~~~------------------------~~~~~~Iiv~Tpe~ 124 (720)
T 2zj8_A 70 KAVYIVPLKALAEEKFQEFQDWEK-IGLRVAMATGDYDSKDE------------------------WLGKYDIIIATAEK 124 (720)
T ss_dssp EEEEECSSGGGHHHHHHHTGGGGG-GTCCEEEECSCSSCCCG------------------------GGGGCSEEEECHHH
T ss_pred EEEEEcCcHHHHHHHHHHHHHHHh-cCCEEEEecCCCCcccc------------------------ccCCCCEEEECHHH
Confidence 899999999999999999976554 48899999987542111 12357999999999
Q ss_pred HHHHHhhcCCCCCCCccEEEEecchhhhhHhHHhHHHHHHHhhhcccccccccccccccccccccccccccccccCCCCC
Q 017196 183 LMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDK 262 (375)
Q Consensus 183 l~~~l~~~~~~~~~~~~~vIiDE~h~l~~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (375)
+..++++ ....++++++|||||+|.+.+..+...+..++..++.
T Consensus 125 l~~~~~~-~~~~l~~~~~vIiDE~H~l~~~~r~~~~~~ll~~l~~----------------------------------- 168 (720)
T 2zj8_A 125 FDSLLRH-GSSWIKDVKILVADEIHLIGSRDRGATLEVILAHMLG----------------------------------- 168 (720)
T ss_dssp HHHHHHH-TCTTGGGEEEEEEETGGGGGCTTTHHHHHHHHHHHBT-----------------------------------
T ss_pred HHHHHHc-ChhhhhcCCEEEEECCcccCCCcccHHHHHHHHHhhc-----------------------------------
Confidence 9998887 4455789999999999999877777788888887763
Q ss_pred CCCceeEEEEEEecCCCchhhhccccCCCeEEecCCccccCcccceeE------EEecc-----CCCcHHHHHHHHHhcC
Q 017196 263 PYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESY------KLICE-----SKLKPLYLVALLQSLG 331 (375)
Q Consensus 263 ~~~~~q~i~~SATl~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~------~~~~~-----~~~k~~~l~~ll~~~~ 331 (375)
+.|++++|||+++ ...+...+ ... .+...... ..+... ..... ...+...+.+.+..
T Consensus 169 ---~~~ii~lSATl~n-~~~~~~~l-~~~-~~~~~~rp----~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 236 (720)
T 2zj8_A 169 ---KAQIIGLSATIGN-PEELAEWL-NAE-LIVSDWRP----VKLRRGVFYQGFVTWEDGSIDRFSSWEELVYDAIRK-- 236 (720)
T ss_dssp ---TBEEEEEECCCSC-HHHHHHHT-TEE-EEECCCCS----SEEEEEEEETTEEEETTSCEEECSSTTHHHHHHHHT--
T ss_pred ---CCeEEEEcCCcCC-HHHHHHHh-CCc-ccCCCCCC----CcceEEEEeCCeeeccccchhhhhHHHHHHHHHHhC--
Confidence 4689999999975 44444333 211 11111110 011111 11111 24455666666653
Q ss_pred CCeEEEEcCChhhHHHHHHHHHHhcCC------------------------------cceEEeccccccccccC
Q 017196 332 EEKCIVFTSSVESTHRLCTLLNHFGEL------------------------------RIKIKEYSGLQRQSVRR 375 (375)
Q Consensus 332 ~~k~lIF~~s~~~a~~l~~~L~~~g~~------------------------------~~~~~~lh~~~~~~~R~ 375 (375)
++++||||+++++|+.++..|...... ...+..+||+|+..+|+
T Consensus 237 ~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~ 310 (720)
T 2zj8_A 237 KKGALIFVNMRRKAERVALELSKKVKSLLTKPEIRALNELADSLEENPTNEKLAKAIRGGVAFHHAGLGRDERV 310 (720)
T ss_dssp TCCEEEECSCHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHTSCSCHHHHHHHHHHTTTEEEECTTSCHHHHH
T ss_pred CCCEEEEecCHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhcccchHHHHHHHhcCeeeecCCCCHHHHH
Confidence 579999999999999999999753211 11389999999999873
No 35
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=99.97 E-value=1e-30 Score=270.29 Aligned_cols=274 Identities=22% Similarity=0.229 Sum_probs=196.6
Q ss_pred ccCccccCCCCCCCCCCHHHHHHHHhCCCCCccHhhHHHHHHhhCCCCCCCCEEEECCCCCchHHHhHHHHHHHhhhccc
Q 017196 20 DVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAV 99 (375)
Q Consensus 20 ~~~~~~~~~~~~~~~l~~~i~~~l~~~g~~~~~~~Q~~~~~~~~~~~~~~~~~ii~a~TGsGKTl~~~l~il~~l~~~~~ 99 (375)
...+|++++ +++++.+.+.+.||.+|+++|.++++.++ ..++++++++|||||||++|.+++++.+...
T Consensus 6 ~~~~~~~l~------l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~---~~~~~~lv~apTGsGKT~~~~l~il~~~~~~-- 74 (715)
T 2va8_A 6 EWMPIEDLK------LPSNVIEIIKKRGIKKLNPPQTEAVKKGL---LEGNRLLLTSPTGSGKTLIAEMGIISFLLKN-- 74 (715)
T ss_dssp CCCBGGGSS------SCHHHHHHHHTTSCCBCCHHHHHHHHTTT---TTTCCEEEECCTTSCHHHHHHHHHHHHHHHS--
T ss_pred ccCcHHHcC------CCHHHHHHHHhCCCCCCCHHHHHHHHHHh---cCCCcEEEEcCCCCcHHHHHHHHHHHHHHHC--
Confidence 345788888 99999999999999999999999987633 3689999999999999999999999887643
Q ss_pred CCceEEEEcccHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcCCCcEEEeC
Q 017196 100 RCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVAT 179 (375)
Q Consensus 100 ~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiV~T 179 (375)
+.+++|++|+++|+.|+++.++.+. ..++++..++|+...... .+ .+++|+|+|
T Consensus 75 -~~~il~i~P~r~La~q~~~~~~~~~-~~g~~v~~~~G~~~~~~~-----------------------~~-~~~~Iiv~T 128 (715)
T 2va8_A 75 -GGKAIYVTPLRALTNEKYLTFKDWE-LIGFKVAMTSGDYDTDDA-----------------------WL-KNYDIIITT 128 (715)
T ss_dssp -CSEEEEECSCHHHHHHHHHHHGGGG-GGTCCEEECCSCSSSCCG-----------------------GG-GGCSEEEEC
T ss_pred -CCeEEEEeCcHHHHHHHHHHHHHhh-cCCCEEEEEeCCCCCchh-----------------------hc-CCCCEEEEc
Confidence 3489999999999999999996554 348899999887542111 11 367999999
Q ss_pred cHHHHHHHhhcCCCCCCCccEEEEecchhhhhHhHHhHHHHHHHhhhcccccccccccccccccccccccccccccccCC
Q 017196 180 PGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGF 259 (375)
Q Consensus 180 p~~l~~~l~~~~~~~~~~~~~vIiDE~h~l~~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (375)
|+++..++.+ ....++++++|||||+|.+.+..+...+..++..++
T Consensus 129 pe~l~~~~~~-~~~~l~~~~~vIiDE~H~l~~~~~~~~l~~i~~~~~--------------------------------- 174 (715)
T 2va8_A 129 YEKLDSLWRH-RPEWLNEVNYFVLDELHYLNDPERGPVVESVTIRAK--------------------------------- 174 (715)
T ss_dssp HHHHHHHHHH-CCGGGGGEEEEEECSGGGGGCTTTHHHHHHHHHHHH---------------------------------
T ss_pred HHHHHHHHhC-ChhHhhccCEEEEechhhcCCcccchHHHHHHHhcc---------------------------------
Confidence 9999998887 445588999999999999876677777777776664
Q ss_pred CCCCCCceeEEEEEEecCCCchhhhccccCCCeEEecCCccccCcccc--------eeEEEecc--------CCCcHHHH
Q 017196 260 KDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERL--------ESYKLICE--------SKLKPLYL 323 (375)
Q Consensus 260 ~~~~~~~~q~i~~SATl~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~i--------~~~~~~~~--------~~~k~~~l 323 (375)
+.|+++||||+++ ...+...+. .+ .+........+...+ ........ ...+...+
T Consensus 175 ------~~~ii~lSATl~n-~~~~~~~l~-~~-~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (715)
T 2va8_A 175 ------RRNLLALSATISN-YKQIAKWLG-AE-PVATNWRPVPLIEGVIYPERKKKEYNVIFKDNTTKKVHGDDAIIAYT 245 (715)
T ss_dssp ------TSEEEEEESCCTT-HHHHHHHHT-CE-EEECCCCSSCEEEEEEEECSSTTEEEEEETTSCEEEEESSSHHHHHH
T ss_pred ------cCcEEEEcCCCCC-HHHHHHHhC-CC-ccCCCCCCCCceEEEEecCCcccceeeecCcchhhhcccchHHHHHH
Confidence 2479999999974 344443332 11 111111100000000 00000111 12233444
Q ss_pred HHHHHhcCCCeEEEEcCChhhHHHHHHHHHHhcCC---------------------------------cceEEecccccc
Q 017196 324 VALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGEL---------------------------------RIKIKEYSGLQR 370 (375)
Q Consensus 324 ~~ll~~~~~~k~lIF~~s~~~a~~l~~~L~~~g~~---------------------------------~~~~~~lh~~~~ 370 (375)
.+.+. .++++||||+++++|+.+++.|...... +..+..+||+|+
T Consensus 246 ~~~~~--~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~v~~~h~~l~ 323 (715)
T 2va8_A 246 LDSLS--KNGQVLVFRNSRKMAESTALKIANYMNFVSLDENALSEILKQLDDIEEGGSDEKELLKSLISKGVAYHHAGLS 323 (715)
T ss_dssp HHHHT--TTCCEEEECSSHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHHTCCSSCHHHHHHHHHHHTTTEEEECTTSC
T ss_pred HHHHh--cCCCEEEEECCHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHhhhccccccHHHHHHHhcCEEEECCCCC
Confidence 44443 4679999999999999999999864211 124889999999
Q ss_pred ccccC
Q 017196 371 QSVRR 375 (375)
Q Consensus 371 ~~~R~ 375 (375)
..+|+
T Consensus 324 ~~~r~ 328 (715)
T 2va8_A 324 KALRD 328 (715)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 98873
No 36
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1e-30 Score=279.06 Aligned_cols=182 Identities=18% Similarity=0.183 Sum_probs=144.3
Q ss_pred CCHHHHHHHHhCCCCCccHhhHHHHHHhhCCCCCCCCEEEECCCCCchHHHhHHHHHHHhhhcccCCceEEEEcccHHHH
Q 017196 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLA 114 (375)
Q Consensus 35 l~~~i~~~l~~~g~~~~~~~Q~~~~~~~~~~~~~~~~~ii~a~TGsGKTl~~~l~il~~l~~~~~~~~~~lil~Pt~~L~ 114 (375)
+++.+...+...+..+|+++|.++++.+. .|++++++||||||||++|.+|++..+... .+++|++||++|+
T Consensus 169 l~~~~~~~~~~~~~f~ltp~Q~~AI~~i~----~g~dvLV~ApTGSGKTlva~l~i~~~l~~g----~rvlvl~PtraLa 240 (1108)
T 3l9o_A 169 IAEHKRVNEARTYPFTLDPFQDTAISCID----RGESVLVSAHTSAGKTVVAEYAIAQSLKNK----QRVIYTSPIKALS 240 (1108)
T ss_dssp TTTTCCCSCSSCCSSCCCHHHHHHHHHHT----TTCCEEEECCSSSHHHHHHHHHHHHHHHTT----CEEEEEESSHHHH
T ss_pred CChhhhHHHHHhCCCCCCHHHHHHHHHHH----cCCCEEEECCCCCChHHHHHHHHHHHHhcC----CeEEEEcCcHHHH
Confidence 44444444455555589999999998865 689999999999999999999999888543 4899999999999
Q ss_pred HHHHHHHHHhccccCceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcCCCcEEEeCcHHHHHHHhhcCCCC
Q 017196 115 LQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFT 194 (375)
Q Consensus 115 ~Q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiV~Tp~~l~~~l~~~~~~~ 194 (375)
.|+++.+.+++. .++.++|+.+ ...+++|+|+||++|.+++.+ ....
T Consensus 241 ~Q~~~~l~~~~~----~VglltGd~~----------------------------~~~~~~IlV~Tpe~L~~~L~~-~~~~ 287 (1108)
T 3l9o_A 241 NQKYRELLAEFG----DVGLMTGDIT----------------------------INPDAGCLVMTTEILRSMLYR-GSEV 287 (1108)
T ss_dssp HHHHHHHHHHTS----SEEEECSSCB----------------------------CCCSCSEEEEEHHHHHHHHHH-CSSH
T ss_pred HHHHHHHHHHhC----CccEEeCccc----------------------------cCCCCCEEEeChHHHHHHHHc-Cccc
Confidence 999999998875 5667888763 245579999999999999988 4456
Q ss_pred CCCccEEEEecchhhhhHhHHhHHHHHHHhhhcccccccccccccccccccccccccccccccCCCCCCCCceeEEEEEE
Q 017196 195 LEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSA 274 (375)
Q Consensus 195 ~~~~~~vIiDE~h~l~~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SA 274 (375)
++++++|||||||++.+.++...+..++..++. +.|+++|||
T Consensus 288 l~~l~lVVIDEaH~l~d~~rg~~~e~ii~~l~~--------------------------------------~~qvl~lSA 329 (1108)
T 3l9o_A 288 MREVAWVIFDEVHYMRDKERGVVWEETIILLPD--------------------------------------KVRYVFLSA 329 (1108)
T ss_dssp HHHEEEEEEETGGGTTSHHHHHHHHHHHHHSCT--------------------------------------TSEEEEEEC
T ss_pred cccCCEEEEhhhhhccccchHHHHHHHHHhcCC--------------------------------------CceEEEEcC
Confidence 788999999999999998888888888888765 678999999
Q ss_pred ecCCCch--hhhccccCCCeEEe
Q 017196 275 TLTQDPN--KLAQLDLHHPLFLT 295 (375)
Q Consensus 275 Tl~~~~~--~~~~~~~~~~~~i~ 295 (375)
|+++... .........+..+.
T Consensus 330 Tipn~~e~a~~l~~~~~~~~~vi 352 (1108)
T 3l9o_A 330 TIPNAMEFAEWICKIHSQPCHIV 352 (1108)
T ss_dssp SCSSCHHHHHHHHHHTCSCEEEE
T ss_pred CCCCHHHHHHHHHhhcCCCeEEE
Confidence 9986532 33333334444443
No 37
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=99.97 E-value=1.1e-30 Score=269.48 Aligned_cols=263 Identities=22% Similarity=0.235 Sum_probs=188.9
Q ss_pred CCHHHHHHHHhCCCCCccHhhHHHHHHhhCCCCCCCCEEEECCCCCchHHHhHHHHHHHhhhcccCCceEEEEcccHHHH
Q 017196 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLA 114 (375)
Q Consensus 35 l~~~i~~~l~~~g~~~~~~~Q~~~~~~~~~~~~~~~~~ii~a~TGsGKTl~~~l~il~~l~~~~~~~~~~lil~Pt~~L~ 114 (375)
+++.+.+.+.+.||.+|+++|.++++.+. .++++++++|||||||++|.+++++.+.. +.+++|++|+++|+
T Consensus 10 l~~~~~~~l~~~g~~~l~~~Q~~~i~~i~----~~~~~lv~apTGsGKT~~~~l~il~~~~~----~~~~l~i~P~r~La 81 (702)
T 2p6r_A 10 ISSYAVGILKEEGIEELFPPQAEAVEKVF----SGKNLLLAMPTAAGKTLLAEMAMVREAIK----GGKSLYVVPLRALA 81 (702)
T ss_dssp HHHHHHHHHHCC---CCCCCCHHHHHHHT----TCSCEEEECSSHHHHHHHHHHHHHHHHHT----TCCEEEEESSHHHH
T ss_pred cCHHHHHHHHhCCCCCCCHHHHHHHHHHh----CCCcEEEEcCCccHHHHHHHHHHHHHHHh----CCcEEEEeCcHHHH
Confidence 67889999999999999999999998855 58999999999999999999999988764 24799999999999
Q ss_pred HHHHHHHHHhccccCceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcCCCcEEEeCcHHHHHHHhhcCCCC
Q 017196 115 LQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFT 194 (375)
Q Consensus 115 ~Q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiV~Tp~~l~~~l~~~~~~~ 194 (375)
.|+++.++.+. ..++++..++|+...... ...+++|+|+||+++..++++ ....
T Consensus 82 ~q~~~~~~~~~-~~g~~v~~~~G~~~~~~~------------------------~~~~~~Iiv~Tpe~l~~~l~~-~~~~ 135 (702)
T 2p6r_A 82 GEKYESFKKWE-KIGLRIGISTGDYESRDE------------------------HLGDCDIIVTTSEKADSLIRN-RASW 135 (702)
T ss_dssp HHHHHHHTTTT-TTTCCEEEECSSCBCCSS------------------------CSTTCSEEEEEHHHHHHHHHT-TCSG
T ss_pred HHHHHHHHHHH-hcCCEEEEEeCCCCcchh------------------------hccCCCEEEECHHHHHHHHHc-ChhH
Confidence 99999996554 348899999987542111 123689999999999998887 4455
Q ss_pred CCCccEEEEecchhhhhHhHHhHHHHHHHhhhcccccccccccccccccccccccccccccccCCCCCCCCceeEEEEEE
Q 017196 195 LEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSA 274 (375)
Q Consensus 195 ~~~~~~vIiDE~h~l~~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SA 274 (375)
++.+++||+||+|.+.+.++...+..++..+..... +.|+++|||
T Consensus 136 l~~~~~vIiDE~H~l~~~~r~~~~~~ll~~l~~~~~-----------------------------------~~~ii~lSA 180 (702)
T 2p6r_A 136 IKAVSCLVVDEIHLLDSEKRGATLEILVTKMRRMNK-----------------------------------ALRVIGLSA 180 (702)
T ss_dssp GGGCCEEEETTGGGGGCTTTHHHHHHHHHHHHHHCT-----------------------------------TCEEEEEEC
T ss_pred HhhcCEEEEeeeeecCCCCcccHHHHHHHHHHhcCc-----------------------------------CceEEEECC
Confidence 789999999999999876777777777777653211 578999999
Q ss_pred ecCCCchhhhccccCCCeEEecCCccccCcccceeEE------EeccCC-------CcHHHHHHHHHhcCCCeEEEEcCC
Q 017196 275 TLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYK------LICESK-------LKPLYLVALLQSLGEEKCIVFTSS 341 (375)
Q Consensus 275 Tl~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~~------~~~~~~-------~k~~~l~~ll~~~~~~k~lIF~~s 341 (375)
|+++ ...+...+ ..+ .+...... ..+...+ ...... .+...+.+.+. +++++||||++
T Consensus 181 Tl~n-~~~~~~~l-~~~-~~~~~~r~----~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~LVF~~s 251 (702)
T 2p6r_A 181 TAPN-VTEIAEWL-DAD-YYVSDWRP----VPLVEGVLCEGTLELFDGAFSTSRRVKFEELVEECVA--ENGGVLVFEST 251 (702)
T ss_dssp CCTT-HHHHHHHT-TCE-EEECCCCS----SCEEEEEECSSEEEEEETTEEEEEECCHHHHHHHHHH--TTCCEEEECSS
T ss_pred CcCC-HHHHHHHh-CCC-cccCCCCC----ccceEEEeeCCeeeccCcchhhhhhhhHHHHHHHHHh--cCCCEEEEcCC
Confidence 9975 45554433 222 12111111 0111110 011111 14455555554 46789999999
Q ss_pred hhhHHHHHHHHHHhcCC---------------------------cceEEeccccccccccC
Q 017196 342 VESTHRLCTLLNHFGEL---------------------------RIKIKEYSGLQRQSVRR 375 (375)
Q Consensus 342 ~~~a~~l~~~L~~~g~~---------------------------~~~~~~lh~~~~~~~R~ 375 (375)
+++|+.++..|...... +..+..+||+|+.++|+
T Consensus 252 ~~~~~~~a~~L~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~ 312 (702)
T 2p6r_A 252 RRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMSRKLAECVRKGAAFHHAGLLNGQRR 312 (702)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCSSHHHHHHTTCCSHHHHHHHHHHHTTCCEECTTSCHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhcChHHHHHHHHhhccccccHHHHHHHhcCeEEecCCCCHHHHH
Confidence 99999999999753100 13478899999998873
No 38
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=99.97 E-value=1.8e-29 Score=269.41 Aligned_cols=259 Identities=17% Similarity=0.211 Sum_probs=188.3
Q ss_pred HHHHH-hCCCCCccHhhHHHHHHhhCCCCCCCCEEEECCCCCchHHHhHHHHHHHhhhcccCCceEEEEcccHHHHHHHH
Q 017196 40 KVALQ-NMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVK 118 (375)
Q Consensus 40 ~~~l~-~~g~~~~~~~Q~~~~~~~~~~~~~~~~~ii~a~TGsGKTl~~~l~il~~l~~~~~~~~~~lil~Pt~~L~~Q~~ 118 (375)
.+.+. .+|| +|+++|.++++.++ .|+|++++||||||||++|+++++..+. .++++||++||++||.|++
T Consensus 68 ~~~~~~~~gf-~pt~iQ~~ai~~il----~g~dvlv~ApTGSGKTl~~l~~il~~~~----~~~~~Lil~PtreLa~Q~~ 138 (1104)
T 4ddu_A 68 RSFFKKKFGK-DLTGYQRLWAKRIV----QGKSFTMVAPTGVGKTTFGMMTALWLAR----KGKKSALVFPTVTLVKQTL 138 (1104)
T ss_dssp HHHHHHHSSS-CCCHHHHHHHHHHT----TTCCEEECCSTTCCHHHHHHHHHHHHHT----TTCCEEEEESSHHHHHHHH
T ss_pred HHHHHHhcCC-CCCHHHHHHHHHHH----cCCCEEEEeCCCCcHHHHHHHHHHHHHh----cCCeEEEEechHHHHHHHH
Confidence 33443 4788 79999999998887 5899999999999999988888877773 3458999999999999999
Q ss_pred HHHHHhccccCceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcCC-CcEEEeCcHHHHHHHhhcCCCCCCC
Q 017196 119 DVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSA-VDILVATPGRLMDHINATRGFTLEH 197 (375)
Q Consensus 119 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~IiV~Tp~~l~~~l~~~~~~~~~~ 197 (375)
+.+++++ ..++++..++|+.+.... .++.+.+..+ ++|+|+||++|.+++.. +.+++
T Consensus 139 ~~l~~l~-~~~i~v~~l~Gg~~~~er------------------~~~~~~l~~g~~~IlV~Tp~rL~~~l~~---l~~~~ 196 (1104)
T 4ddu_A 139 ERLQKLA-DEKVKIFGFYSSMKKEEK------------------EKFEKSFEEDDYHILVFSTQFVSKNREK---LSQKR 196 (1104)
T ss_dssp HHHHTTS-CTTSCEEEECTTCCTTHH------------------HHHHHHHHTSCCSEEEEEHHHHHHSHHH---HHTSC
T ss_pred HHHHHhh-CCCCeEEEEeCCCCHHHH------------------HHHHHHHhCCCCCEEEECHHHHHHHHHh---hcccC
Confidence 9999987 668999999999876322 1223345554 89999999999888775 56778
Q ss_pred ccEEEEecchhhhh-----------HhHHhH-HHHHHHhhhcccccccccccccccccccccccccccccccCCCCCCCC
Q 017196 198 LCYLVVDETDRLLR-----------EAYQAW-LPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYP 265 (375)
Q Consensus 198 ~~~vIiDE~h~l~~-----------~~~~~~-l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (375)
+++||+||||++.. .+|... +..++..++.... ..+ -....
T Consensus 197 l~~lViDEaH~l~~~~r~~Dr~L~~~gf~~~~i~~il~~l~~~~~-------------------~~~--------~~~~~ 249 (1104)
T 4ddu_A 197 FDFVFVDDVDAVLKASRNIDTLLMMVGIPEEIIRKAFSTIKQGKI-------------------YER--------PKNLK 249 (1104)
T ss_dssp CSEEEESCHHHHTTSSHHHHHHHHTSSCCHHHHHHHHHHHHHTSC-------------------CCC--------CSSCC
T ss_pred cCEEEEeCCCccccccccchhhhHhcCCCHHHHHHHHHhcccchh-------------------hhh--------hccCC
Confidence 99999999987653 344444 6777777662100 000 00002
Q ss_pred ceeEEEEEEe-cCCCchhh-hccccCCCeEEecCCccccCcccceeEEEeccCCCcHHHHHHHHHhcCCCeEEEEcCChh
Q 017196 266 RLVKMVLSAT-LTQDPNKL-AQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVE 343 (375)
Q Consensus 266 ~~q~i~~SAT-l~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~k~lIF~~s~~ 343 (375)
+.|+++|||| .+..+... ....+. +.+.... ....++.+.+..+ .+...+.++++... +++||||++++
T Consensus 250 ~~q~ll~SAT~~p~~~~~~~~~~~l~----i~v~~~~-~~~~~i~~~~~~~---~k~~~L~~ll~~~~-~~~LVF~~s~~ 320 (1104)
T 4ddu_A 250 PGILVVSSATAKPRGIRPLLFRDLLN----FTVGRLV-SVARNITHVRISS---RSKEKLVELLEIFR-DGILIFAQTEE 320 (1104)
T ss_dssp CCEEEEECBSSCCCSSTTHHHHHHTC----CCCCBCC-CCCCCEEEEEESC---CCHHHHHHHHHHHC-SSEEEEESSSH
T ss_pred CceEEEEcCCCCcHHHHHHHhhccee----EEeccCC-CCcCCceeEEEec---CHHHHHHHHHHhcC-CCEEEEECcHH
Confidence 6799999999 55554422 222221 2222221 2345566666555 57788888888754 79999999999
Q ss_pred hHHHHHHHHHHhcCCcceEE-ecccc
Q 017196 344 STHRLCTLLNHFGELRIKIK-EYSGL 368 (375)
Q Consensus 344 ~a~~l~~~L~~~g~~~~~~~-~lh~~ 368 (375)
+|+.++..|+..| +.+. .+||+
T Consensus 321 ~a~~l~~~L~~~g---~~~~~~lhg~ 343 (1104)
T 4ddu_A 321 EGKELYEYLKRFK---FNVGETWSEF 343 (1104)
T ss_dssp HHHHHHHHHHHTT---CCEEESSSSH
T ss_pred HHHHHHHHHHhCC---CCeeeEecCc
Confidence 9999999999654 8898 99994
No 39
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=99.97 E-value=1.9e-30 Score=267.49 Aligned_cols=147 Identities=17% Similarity=0.165 Sum_probs=118.7
Q ss_pred HHHHHhCCCCCccHhhHHHHHHhhCCCCCCCCEEEECCCCCchHHHhHHHHHHHhhhcc-cCCceEEEEcccHHHHHHHH
Q 017196 40 KVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRA-VRCLRALVVLPTRDLALQVK 118 (375)
Q Consensus 40 ~~~l~~~g~~~~~~~Q~~~~~~~~~~~~~~~~~ii~a~TGsGKTl~~~l~il~~l~~~~-~~~~~~lil~Pt~~L~~Q~~ 118 (375)
.+++..+|+.+|+++|.++++.++ .|+|+++++|||+|||++|++++++.+.... ..+.++||++||++|+.|+.
T Consensus 3 ~~~l~~~g~~~lr~~Q~~~i~~~l----~g~~~iv~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~lvl~Pt~~L~~Q~~ 78 (696)
T 2ykg_A 3 VSDTNLYSPFKPRNYQLELALPAM----KGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQNK 78 (696)
T ss_dssp ----CTTC--CCCHHHHHHHHHHH----TTCCEEEECCTTSSHHHHHHHHHHHHHHHSCTTCCCCEEEECSSHHHHHHHH
T ss_pred CCcccccCCCCccHHHHHHHHHHH----cCCCEEEEcCCCchHHHHHHHHHHHHHHhCccCCCCeEEEEECCHHHHHHHH
Confidence 456778899999999999999887 5899999999999999999999998887643 12358999999999999999
Q ss_pred HHHHHhccccCceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcCCCcEEEeCcHHHHHHHhhcCCC-CCCC
Q 017196 119 DVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGF-TLEH 197 (375)
Q Consensus 119 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiV~Tp~~l~~~l~~~~~~-~~~~ 197 (375)
+.+++++...++++..++|+...... ...+..+++|+|+||++|.+.+.. ..+ .+..
T Consensus 79 ~~~~~~~~~~~~~v~~~~g~~~~~~~---------------------~~~~~~~~~Iiv~Tp~~L~~~l~~-~~~~~l~~ 136 (696)
T 2ykg_A 79 SVFSKYFERHGYRVTGISGATAENVP---------------------VEQIVENNDIIILTPQILVNNLKK-GTIPSLSI 136 (696)
T ss_dssp HHHHHHTTTTTCCEEEECSSSCSSSC---------------------HHHHHHTCSEEEECHHHHHHHHHT-TSSCCGGG
T ss_pred HHHHHHhccCCceEEEEeCCcccccc---------------------HHHhccCCCEEEECHHHHHHHHhc-Cccccccc
Confidence 99999998778999999998643222 122334689999999999999987 334 6889
Q ss_pred ccEEEEecchhhhhH
Q 017196 198 LCYLVVDETDRLLRE 212 (375)
Q Consensus 198 ~~~vIiDE~h~l~~~ 212 (375)
+++|||||||++.+.
T Consensus 137 ~~~vViDEaH~~~~~ 151 (696)
T 2ykg_A 137 FTLMIFDECHNTSKQ 151 (696)
T ss_dssp CSEEEEETGGGCSTT
T ss_pred ccEEEEeCCCcccCc
Confidence 999999999998654
No 40
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=99.97 E-value=2.1e-29 Score=252.55 Aligned_cols=141 Identities=22% Similarity=0.254 Sum_probs=114.5
Q ss_pred CCCCccHhhHHHHHHhhCCCCCCCCEEEECCCCCchHHHhHHHHHHHhhhccc-CCceEEEEcccHHHHHHHHHHHHHhc
Q 017196 47 GISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAV-RCLRALVVLPTRDLALQVKDVFAAIA 125 (375)
Q Consensus 47 g~~~~~~~Q~~~~~~~~~~~~~~~~~ii~a~TGsGKTl~~~l~il~~l~~~~~-~~~~~lil~Pt~~L~~Q~~~~~~~~~ 125 (375)
+..+|+|+|.++++.++ .|+|+++++|||+|||++|++|+++.+..... .+.++||++||++|+.|+++.+++++
T Consensus 4 ~~~~~~~~Q~~~i~~~~----~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~ 79 (556)
T 4a2p_A 4 ETKKARSYQIELAQPAI----NGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHF 79 (556)
T ss_dssp ----CCHHHHHHHHHHH----TTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHH----cCCCEEEEcCCCChHHHHHHHHHHHHHHhCcccCCCeEEEEeCCHHHHHHHHHHHHHHh
Confidence 34589999999999887 57899999999999999999999998877532 25689999999999999999999999
Q ss_pred cccCceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcCCCcEEEeCcHHHHHHHhhcCCC-CCCCccEEEEe
Q 017196 126 PAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGF-TLEHLCYLVVD 204 (375)
Q Consensus 126 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiV~Tp~~l~~~l~~~~~~-~~~~~~~vIiD 204 (375)
...++++..++|+....... ..+..+++|+|+||++|.+.+.. ..+ .+..+++||+|
T Consensus 80 ~~~~~~~~~~~g~~~~~~~~---------------------~~~~~~~~i~v~T~~~l~~~~~~-~~~~~~~~~~~vViD 137 (556)
T 4a2p_A 80 ERQGYSVQGISGENFSNVSV---------------------EKVIEDSDIIVVTPQILVNSFED-GTLTSLSIFTLMIFD 137 (556)
T ss_dssp GGGTCCEEECCCC-----CH---------------------HHHHHHCSEEEECHHHHHHHHHS-SSCCCSTTCSEEEEE
T ss_pred cccCceEEEEeCCCCcchhH---------------------HHhhCCCCEEEECHHHHHHHHHh-CcccccccCCEEEEE
Confidence 88899999999987543322 23334579999999999999987 445 78999999999
Q ss_pred cchhhhhHh
Q 017196 205 ETDRLLREA 213 (375)
Q Consensus 205 E~h~l~~~~ 213 (375)
|||++.+.+
T Consensus 138 Eah~~~~~~ 146 (556)
T 4a2p_A 138 ECHNTTGNH 146 (556)
T ss_dssp TGGGCSTTS
T ss_pred CCcccCCcc
Confidence 999998765
No 41
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=99.96 E-value=6e-29 Score=249.03 Aligned_cols=139 Identities=19% Similarity=0.193 Sum_probs=117.4
Q ss_pred CccHhhHHHHHHhhCCCCCCCCEEEECCCCCchHHHhHHHHHHHhhhcc-cCCceEEEEcccHHHHHHHHHHHHHhcccc
Q 017196 50 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRA-VRCLRALVVLPTRDLALQVKDVFAAIAPAV 128 (375)
Q Consensus 50 ~~~~~Q~~~~~~~~~~~~~~~~~ii~a~TGsGKTl~~~l~il~~l~~~~-~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~ 128 (375)
+|+++|.++++.++ .|+++++++|||+|||++|++|+++.+.... ..+.++||++||++|+.|+++.+++++...
T Consensus 4 ~~~~~Q~~~i~~~~----~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~ 79 (555)
T 3tbk_A 4 KPRNYQLELALPAK----KGKNTIICAPTGCGKTFVSLLICEHHLKKFPCGQKGKVVFFANQIPVYEQQATVFSRYFERL 79 (555)
T ss_dssp CCCHHHHHHHHHHH----TTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHHTT
T ss_pred CCcHHHHHHHHHHh----CCCCEEEEeCCCChHHHHHHHHHHHHHHhcccCCCCEEEEEeCCHHHHHHHHHHHHHHhccC
Confidence 79999999999887 5899999999999999999999999887753 125689999999999999999999999888
Q ss_pred CceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcCCCcEEEeCcHHHHHHHhhcCCCCCCCccEEEEecchh
Q 017196 129 GLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDR 208 (375)
Q Consensus 129 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiV~Tp~~l~~~l~~~~~~~~~~~~~vIiDE~h~ 208 (375)
++++..++|+....... +.+..+++|+|+||+++.+.+.......+..+++||+||||+
T Consensus 80 ~~~~~~~~g~~~~~~~~---------------------~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~ 138 (555)
T 3tbk_A 80 GYNIASISGATSDSVSV---------------------QHIIEDNDIIILTPQILVNNLNNGAIPSLSVFTLMIFDECHN 138 (555)
T ss_dssp TCCEEEECTTTGGGSCH---------------------HHHHHHCSEEEECHHHHHHHHHTSSSCCGGGCSEEEETTGGG
T ss_pred CcEEEEEcCCCcchhhH---------------------HHHhcCCCEEEECHHHHHHHHhcCcccccccCCEEEEECccc
Confidence 99999999987543321 233345799999999999999873322788999999999999
Q ss_pred hhhHh
Q 017196 209 LLREA 213 (375)
Q Consensus 209 l~~~~ 213 (375)
+.+.+
T Consensus 139 ~~~~~ 143 (555)
T 3tbk_A 139 TSKNH 143 (555)
T ss_dssp CSTTC
T ss_pred cCCcc
Confidence 97763
No 42
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=99.96 E-value=1.9e-29 Score=269.05 Aligned_cols=260 Identities=18% Similarity=0.255 Sum_probs=193.1
Q ss_pred HHHHHH-hCCCCCccHhhHHHHHHhhCCCCCCCCEEEECCCCCchHHHhHHHHHHHhhhcccCCceEEEEcccHHHHHHH
Q 017196 39 LKVALQ-NMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQV 117 (375)
Q Consensus 39 i~~~l~-~~g~~~~~~~Q~~~~~~~~~~~~~~~~~ii~a~TGsGKTl~~~l~il~~l~~~~~~~~~~lil~Pt~~L~~Q~ 117 (375)
+.+.+. .+||. | ++|.++++.++ .|+|++++||||||||+ |++|++..+... ++++||++||++||.|+
T Consensus 46 ~~~~~~~~~g~~-p-~iQ~~ai~~il----~g~dvlv~apTGSGKTl-~~lp~l~~~~~~---~~~~lil~PtreLa~Q~ 115 (1054)
T 1gku_B 46 FVEFFRKCVGEP-R-AIQKMWAKRIL----RKESFAATAPTGVGKTS-FGLAMSLFLALK---GKRCYVIFPTSLLVIQA 115 (1054)
T ss_dssp HHHHHHTTTCSC-C-HHHHHHHHHHH----TTCCEECCCCBTSCSHH-HHHHHHHHHHTT---SCCEEEEESCHHHHHHH
T ss_pred HHHHHHHhcCCC-H-HHHHHHHHHHH----hCCCEEEEcCCCCCHHH-HHHHHHHHHhhc---CCeEEEEeccHHHHHHH
Confidence 335554 48998 9 99999999888 58999999999999998 889998877653 45899999999999999
Q ss_pred HHHHHHhccccCc----eEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcCCCcEEEeCcHHHHHHHhhcCCC
Q 017196 118 KDVFAAIAPAVGL----SVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGF 193 (375)
Q Consensus 118 ~~~~~~~~~~~~~----~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiV~Tp~~l~~~l~~~~~~ 193 (375)
++.+++++...++ ++..++|+........ +.+.+.. ++|+|+||++|.+++.+
T Consensus 116 ~~~l~~l~~~~~i~~~~~v~~~~Gg~~~~~~~~------------------~~~~l~~-~~IlV~TP~~L~~~l~~---- 172 (1054)
T 1gku_B 116 AETIRKYAEKAGVGTENLIGYYHGRIPKREKEN------------------FMQNLRN-FKIVITTTQFLSKHYRE---- 172 (1054)
T ss_dssp HHHHHHHHTTTCCSGGGSEEECCSSCCSHHHHH------------------HHHSGGG-CSEEEEEHHHHHHCSTT----
T ss_pred HHHHHHHHhhcCCCccceEEEEeCCCChhhHHH------------------HHhhccC-CCEEEEcHHHHHHHHHH----
Confidence 9999999988888 8999999987655321 2233444 89999999999987665
Q ss_pred CCCCccEEEEecchhhhhHhHHhHHHHHHHhhhcccccccccccccccccccccccccccccccCCCCCCCCceeEEEEE
Q 017196 194 TLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLS 273 (375)
Q Consensus 194 ~~~~~~~vIiDE~h~l~~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~S 273 (375)
++.+++||+||||++++ +...+..++..++....... .....+.|++++|
T Consensus 173 -L~~l~~lViDEah~~l~--~~~~~~~i~~~lgf~~~~~~---------------------------~~~~~~~q~~l~S 222 (1054)
T 1gku_B 173 -LGHFDFIFVDDVDAILK--ASKNVDKLLHLLGFHYDLKT---------------------------KSWVGEARGCLMV 222 (1054)
T ss_dssp -SCCCSEEEESCHHHHHT--STHHHHHHHHHTTEEEETTT---------------------------TEEEECCSSEEEE
T ss_pred -hccCCEEEEeChhhhhh--ccccHHHHHHHhCcchhhhh---------------------------hhcccCCceEEEE
Confidence 56899999999999987 45566777766543211000 0001256789999
Q ss_pred EecCCCchhhhccccCCCeEEecCCccccCcccceeEEEeccCCCcHHHHHHHHHhcCCCeEEEEcCChhhHHHHHHHHH
Q 017196 274 ATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLN 353 (375)
Q Consensus 274 ATl~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~k~lIF~~s~~~a~~l~~~L~ 353 (375)
||++.. ..+...++.++..+.+.... .....+.+.+. ...+...+.++++.. ++++||||+++++|+.+++.|+
T Consensus 223 AT~t~~-~~~~~~~~~~~~~i~v~~~~-~~~~~i~~~~~---~~~k~~~L~~ll~~~-~~~~LVF~~t~~~a~~l~~~L~ 296 (1054)
T 1gku_B 223 STATAK-KGKKAELFRQLLNFDIGSSR-ITVRNVEDVAV---NDESISTLSSILEKL-GTGGIIYARTGEEAEEIYESLK 296 (1054)
T ss_dssp CCCCSC-CCTTHHHHHHHHCCCCSCCE-ECCCCEEEEEE---SCCCTTTTHHHHTTS-CSCEEEEESSHHHHHHHHHTTT
T ss_pred ecCCCc-hhHHHHHhhcceEEEccCcc-cCcCCceEEEe---chhHHHHHHHHHhhc-CCCEEEEEcCHHHHHHHHHHHh
Confidence 999887 55544444444333333332 22334555544 356667788888876 4689999999999999999998
Q ss_pred HhcCCcceEEeccccccc
Q 017196 354 HFGELRIKIKEYSGLQRQ 371 (375)
Q Consensus 354 ~~g~~~~~~~~lh~~~~~ 371 (375)
.. +.+..+||+|..
T Consensus 297 ---~~-~~v~~lhg~~~~ 310 (1054)
T 1gku_B 297 ---NK-FRIGIVTATKKG 310 (1054)
T ss_dssp ---TS-SCEEECTTSSSH
T ss_pred ---hc-cCeeEEeccHHH
Confidence 44 889999999853
No 43
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=99.96 E-value=7.8e-29 Score=273.22 Aligned_cols=277 Identities=18% Similarity=0.130 Sum_probs=194.2
Q ss_pred CCHHHHHHHHhCCCCCccHhhHHHHHHhhCCCCCCCCEEEECCCCCchHHHhHHHHHHHhhhcccCCceEEEEcccHHHH
Q 017196 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLA 114 (375)
Q Consensus 35 l~~~i~~~l~~~g~~~~~~~Q~~~~~~~~~~~~~~~~~ii~a~TGsGKTl~~~l~il~~l~~~~~~~~~~lil~Pt~~L~ 114 (375)
|++...+.+...+|.+++|+|.++++.++. .++|++++||||||||++|.+++++.+.+. ++.++||++|+++||
T Consensus 911 L~~~~~e~l~~~~f~~fnpiQ~q~~~~l~~---~~~nvlv~APTGSGKTliaelail~~l~~~--~~~kavyi~P~raLa 985 (1724)
T 4f92_B 911 LRNSAFESLYQDKFPFFNPIQTQVFNTVYN---SDDNVFVGAPTGSGKTICAEFAILRMLLQS--SEGRCVYITPMEALA 985 (1724)
T ss_dssp SCCHHHHTTTTTTCSBCCHHHHHHHHHHHS---CCSCEEEECCTTSCCHHHHHHHHHHHHHHC--TTCCEEEECSCHHHH
T ss_pred ccCHHHHHHHHhcCCCCCHHHHHHHHHHhc---CCCcEEEEeCCCCCchHHHHHHHHHHHHhC--CCCEEEEEcChHHHH
Confidence 566667777777899999999999999885 678999999999999999999999999875 345799999999999
Q ss_pred HHHHHHHHH-hccccCceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcCCCcEEEeCcHHHHHHHhhcCCC
Q 017196 115 LQVKDVFAA-IAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGF 193 (375)
Q Consensus 115 ~Q~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiV~Tp~~l~~~l~~~~~~ 193 (375)
.|.++.+++ +....++++..++|+...+.. ...+++|+|+||+++..+++++...
T Consensus 986 ~q~~~~~~~~f~~~~g~~V~~ltGd~~~~~~------------------------~~~~~~IiV~TPEkld~llr~~~~~ 1041 (1724)
T 4f92_B 986 EQVYMDWYEKFQDRLNKKVVLLTGETSTDLK------------------------LLGKGNIIISTPEKWDILSRRWKQR 1041 (1724)
T ss_dssp HHHHHHHHHHHTTTSCCCEEECCSCHHHHHH------------------------HHHHCSEEEECHHHHHHHHTTTTTC
T ss_pred HHHHHHHHHHhchhcCCEEEEEECCCCcchh------------------------hcCCCCEEEECHHHHHHHHhCcccc
Confidence 999999975 556678999999998654322 1234699999999998888764432
Q ss_pred -CCCCccEEEEecchhhhhHhHHhHHHHHHHhhhcccccccccccccccccccccccccccccccCCCCCCCCceeEEEE
Q 017196 194 -TLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVL 272 (375)
Q Consensus 194 -~~~~~~~vIiDE~h~l~~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~ 272 (375)
.++++++||+||+|.+.+. .+..++.++..+...... ...+.|++++
T Consensus 1042 ~~l~~v~lvViDE~H~l~d~-rg~~le~il~rl~~i~~~-------------------------------~~~~~riI~l 1089 (1724)
T 4f92_B 1042 KNVQNINLFVVDEVHLIGGE-NGPVLEVICSRMRYISSQ-------------------------------IERPIRIVAL 1089 (1724)
T ss_dssp HHHHSCSEEEECCGGGGGST-THHHHHHHHHHHHHHHHT-------------------------------TSSCCEEEEE
T ss_pred cccceeeEEEeechhhcCCC-CCccHHHHHHHHHHHHhh-------------------------------cCCCceEEEE
Confidence 3788999999999988653 455566565554321100 0116799999
Q ss_pred EEecCCCchhhhccccCC-CeEEecCCccccCcccceeEEEeccCCCcH-------HHHHHHHHhc-CCCeEEEEcCChh
Q 017196 273 SATLTQDPNKLAQLDLHH-PLFLTTGETRYKLPERLESYKLICESKLKP-------LYLVALLQSL-GEEKCIVFTSSVE 343 (375)
Q Consensus 273 SATl~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~i~~~~~~~~~~~k~-------~~l~~ll~~~-~~~k~lIF~~s~~ 343 (375)
|||+++ ..+++.+...+ .....+.... .|..++.+....+..... ..+...+... ..+++||||+|+.
T Consensus 1090 SATl~N-~~dla~WL~~~~~~~~~~~~~~--RPvpL~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~lVF~~sR~ 1166 (1724)
T 4f92_B 1090 SSSLSN-AKDVAHWLGCSATSTFNFHPNV--RPVPLELHIQGFNISHTQTRLLSMAKPVYHAITKHSPKKPVIVFVPSRK 1166 (1724)
T ss_dssp ESCBTT-HHHHHHHHTCCSTTEEECCGGG--CSSCEEEEEEEECCCSHHHHHHTTHHHHHHHHHHHCSSSCEEEEESSHH
T ss_pred eCCCCC-HHHHHHHhCCCCCCeEEeCCCC--CCCCeEEEEEeccCCCchhhhhhhcchHHHHHHHhcCCCCeeeeCCCHH
Confidence 999975 55555544322 2222333221 233344443333333222 2223334333 5678999999999
Q ss_pred hHHHHHHHHHHhc----C---------------------------CcceEEeccccccccccC
Q 017196 344 STHRLCTLLNHFG----E---------------------------LRIKIKEYSGLQRQSVRR 375 (375)
Q Consensus 344 ~a~~l~~~L~~~g----~---------------------------~~~~~~~lh~~~~~~~R~ 375 (375)
.|+.++..|.... . ....+..+||+|++.+|+
T Consensus 1167 ~~~~~A~~L~~~~~~~~~~~~~~~~~~~~l~~~l~~~~d~~L~~~l~~GIa~hHagL~~~~R~ 1229 (1724)
T 4f92_B 1167 QTRLTAIDILTTCAADIQRQRFLHCTEKDLIPYLEKLSDSTLKETLLNGVGYLHEGLSPMERR 1229 (1724)
T ss_dssp HHHHHHHHHHHHHHHTTCTTTTBCSCHHHHHHHHTTCCCHHHHHHHHTTEEEECTTSCHHHHH
T ss_pred HHHHHHHHHHHHHhhccchhhhhcccHHHHHHHHhhcccHHHHHHHhCCEEEECCCCCHHHHH
Confidence 9999988774320 0 012488999999999884
No 44
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=99.96 E-value=6e-29 Score=274.09 Aligned_cols=278 Identities=18% Similarity=0.203 Sum_probs=190.6
Q ss_pred CCCHHHHHHHHhCCCCCccHhhHHHHHHhhCCCCCCCCEEEECCCCCchHHHhHHHHHHHhhhcc-------cCCceEEE
Q 017196 34 CLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRA-------VRCLRALV 106 (375)
Q Consensus 34 ~l~~~i~~~l~~~g~~~~~~~Q~~~~~~~~~~~~~~~~~ii~a~TGsGKTl~~~l~il~~l~~~~-------~~~~~~li 106 (375)
.|+++....+. ||++|+++|.++++.++. .++|++++||||||||++|.++++..+.+.. ..+.++||
T Consensus 65 ~Lp~~~~~~f~--g~~~ln~iQs~~~~~al~---~~~N~lv~APTGsGKTlva~l~il~~l~~~~~~~~~~~~~~~k~ly 139 (1724)
T 4f92_B 65 KLPKYAQAGFE--GFKTLNRIQSKLYRAALE---TDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIY 139 (1724)
T ss_dssp TSCGGGSTTCT--TCSBCCHHHHHTHHHHHT---CCCCEEEECCTTSCCHHHHHHHHHHHHGGGCCTTSSCCTTSCEEEE
T ss_pred hcCHHHHHhcC--CCCCCCHHHHHHHHHHHc---CCCcEEEEeCCcchHHHHHHHHHHHHHHhhccccccccCCCCEEEE
Confidence 36666555543 799999999999999886 7899999999999999999999999997532 23568999
Q ss_pred EcccHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcCCCcEEEeCcHHHHHH
Q 017196 107 VLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDH 186 (375)
Q Consensus 107 l~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiV~Tp~~l~~~ 186 (375)
++|+++||.|.++.+++.+...|++|..++|+...... ...+++|+||||+++..+
T Consensus 140 iaP~kALa~e~~~~l~~~~~~~gi~V~~~tGd~~~~~~------------------------~~~~~~IlVtTpEkld~l 195 (1724)
T 4f92_B 140 IAPMRSLVQEMVGSFGKRLATYGITVAELTGDHQLCKE------------------------EISATQIIVCTPEKWDII 195 (1724)
T ss_dssp ECSSHHHHHHHHHHHHHHHTTTTCCEEECCSSCSSCCT------------------------TGGGCSEEEECHHHHHHH
T ss_pred ECCHHHHHHHHHHHHHHHHhhCCCEEEEEECCCCCCcc------------------------ccCCCCEEEECHHHHHHH
Confidence 99999999999999999888889999999998653211 123579999999998666
Q ss_pred HhhcCC-CCCCCccEEEEecchhhhhHhHHhHHHHHHHhhhcccccccccccccccccccccccccccccccCCCCCCCC
Q 017196 187 INATRG-FTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYP 265 (375)
Q Consensus 187 l~~~~~-~~~~~~~~vIiDE~h~l~~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (375)
+++... ..++.+++|||||+|.+.+ ..+..++.++..+...... ..+
T Consensus 196 lr~~~~~~~l~~v~~vIiDEvH~l~d-~RG~~lE~~l~rl~~~~~~-------------------------------~~~ 243 (1724)
T 4f92_B 196 TRKGGERTYTQLVRLIILDEIHLLHD-DRGPVLEALVARAIRNIEM-------------------------------TQE 243 (1724)
T ss_dssp TTSSTTHHHHTTEEEEEETTGGGGGS-TTHHHHHHHHHHHHHHHHH-------------------------------HTC
T ss_pred HcCCccchhhcCcCEEEEecchhcCC-ccHHHHHHHHHHHHHHHHh-------------------------------CCC
Confidence 655321 2378899999999997754 4555566655543221000 001
Q ss_pred ceeEEEEEEecCCCchhhhccccCCCe--EEecCCccccCcccceeEEEeccCCCcH-------HHHHHHHHhc-CCCeE
Q 017196 266 RLVKMVLSATLTQDPNKLAQLDLHHPL--FLTTGETRYKLPERLESYKLICESKLKP-------LYLVALLQSL-GEEKC 335 (375)
Q Consensus 266 ~~q~i~~SATl~~~~~~~~~~~~~~~~--~i~~~~~~~~~~~~i~~~~~~~~~~~k~-------~~l~~ll~~~-~~~k~ 335 (375)
+.|+|++|||+++ ..+++.+.-.++. ...++.. ..|..+++.+......... ..+.+.+... .++++
T Consensus 244 ~~riI~LSATl~N-~~dvA~wL~~~~~~~~~~~~~~--~RPvpL~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 320 (1724)
T 4f92_B 244 DVRLIGLSATLPN-YEDVATFLRVDPAKGLFYFDNS--FRPVPLEQTYVGITEKKAIKRFQIMNEIVYEKIMEHAGKNQV 320 (1724)
T ss_dssp CCEEEEEECSCTT-HHHHHHHTTCCHHHHEEECCGG--GCSSCEEEECCEECCCCHHHHHHHHHHHHHHHHTTCCSSCCE
T ss_pred CCcEEEEecccCC-HHHHHHHhCCCCCCCeEEECCC--CccCccEEEEeccCCcchhhhhHHHHHHHHHHHHHHhcCCcE
Confidence 6789999999974 5555543322211 1112211 1233455544444433221 1222233332 45689
Q ss_pred EEEcCChhhHHHHHHHHHHhc----C------------------------------CcceEEeccccccccccC
Q 017196 336 IVFTSSVESTHRLCTLLNHFG----E------------------------------LRIKIKEYSGLQRQSVRR 375 (375)
Q Consensus 336 lIF~~s~~~a~~l~~~L~~~g----~------------------------------~~~~~~~lh~~~~~~~R~ 375 (375)
||||+|++.|+.+++.|.... . ....+.++||+|++.+|+
T Consensus 321 LVF~~sR~~~~~~A~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Gva~HHagL~~~~R~ 394 (1724)
T 4f92_B 321 LVFVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLLPYGFAIHHAGMTRVDRT 394 (1724)
T ss_dssp EEECSSTTTTHHHHHHHHHHHHHTTSTTCCSSCCTTCSSHHHHTTSCCSTHHHHHHTTTTEEEECSSSCTHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHhhccchhhhcccchhHHHHHHhhhcccccHHHHHHhhcCEEEEcCCCCHHHHH
Confidence 999999999999999886421 0 012378899999999884
No 45
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=99.96 E-value=4.2e-28 Score=253.31 Aligned_cols=143 Identities=22% Similarity=0.237 Sum_probs=115.5
Q ss_pred hCCCCCccHhhHHHHHHhhCCCCCCCCEEEECCCCCchHHHhHHHHHHHhhhcc-cCCceEEEEcccHHHHHHHHHHHHH
Q 017196 45 NMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRA-VRCLRALVVLPTRDLALQVKDVFAA 123 (375)
Q Consensus 45 ~~g~~~~~~~Q~~~~~~~~~~~~~~~~~ii~a~TGsGKTl~~~l~il~~l~~~~-~~~~~~lil~Pt~~L~~Q~~~~~~~ 123 (375)
.+|+..|+++|.++++.++ .|+|+++++|||+|||++|++|++..+.... ..+.++|||+||++|+.|+++.+++
T Consensus 243 ~~g~~~l~~~Q~~~i~~~l----~~~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~Lvl~Pt~~L~~Q~~~~~~~ 318 (797)
T 4a2q_A 243 VYETKKARSYQIELAQPAI----NGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKH 318 (797)
T ss_dssp -----CCCHHHHHHHHHHH----TTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHH
T ss_pred hcCCCCCCHHHHHHHHHHH----hCCCEEEEeCCCChHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHH
Confidence 4578899999999999887 5789999999999999999999999987753 1256899999999999999999999
Q ss_pred hccccCceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcCCCcEEEeCcHHHHHHHhhcCCC-CCCCccEEE
Q 017196 124 IAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGF-TLEHLCYLV 202 (375)
Q Consensus 124 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiV~Tp~~l~~~l~~~~~~-~~~~~~~vI 202 (375)
+++..++++..++|+....... +.+..+++|+|+||++|.+.+.. ..+ .+..+++||
T Consensus 319 ~~~~~~~~v~~~~g~~~~~~~~---------------------~~~~~~~~Ivv~Tp~~l~~~l~~-~~~~~~~~~~~iV 376 (797)
T 4a2q_A 319 HFERQGYSVQGISGENFSNVSV---------------------EKVIEDSDIIVVTPQILVNSFED-GTLTSLSIFTLMI 376 (797)
T ss_dssp HHGGGTCCEEEECCC-----CH---------------------HHHHHTCSEEEECHHHHHHHHHS-SSCCCGGGCSEEE
T ss_pred hcccCCceEEEEeCCcchhhhH---------------------HHhhCCCCEEEEchHHHHHHHHh-ccccccccCCEEE
Confidence 9988899999999987543322 23345689999999999999987 444 788999999
Q ss_pred EecchhhhhHh
Q 017196 203 VDETDRLLREA 213 (375)
Q Consensus 203 iDE~h~l~~~~ 213 (375)
|||||++.+..
T Consensus 377 iDEaH~~~~~~ 387 (797)
T 4a2q_A 377 FDECHNTTGNH 387 (797)
T ss_dssp ETTGGGCSTTS
T ss_pred EECccccCCCc
Confidence 99999997763
No 46
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=99.96 E-value=3.8e-28 Score=257.12 Aligned_cols=156 Identities=21% Similarity=0.224 Sum_probs=131.4
Q ss_pred HhCCCCCccHhhHHHHHHhhCCCCCCCCEEEECCCCCchHHHhHHHHHHHhhhcccCCceEEEEcccHHHHHHHHHHHHH
Q 017196 44 QNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAA 123 (375)
Q Consensus 44 ~~~g~~~~~~~Q~~~~~~~~~~~~~~~~~ii~a~TGsGKTl~~~l~il~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~ 123 (375)
..++| +|+++|.++++.+. .|+++++++|||+|||++|.++++..+.. +.++||++||++|+.|+++.+.+
T Consensus 81 ~~~~f-~L~~~Q~eai~~l~----~g~~vLV~apTGSGKTlva~lai~~~l~~----g~rvL~l~PtkaLa~Q~~~~l~~ 151 (1010)
T 2xgj_A 81 RTYPF-TLDPFQDTAISCID----RGESVLVSAHTSAGKTVVAEYAIAQSLKN----KQRVIYTSPIKALSNQKYRELLA 151 (1010)
T ss_dssp CCCSS-CCCHHHHHHHHHHH----HTCEEEEECCTTSCHHHHHHHHHHHHHHT----TCEEEEEESSHHHHHHHHHHHHH
T ss_pred HhCCC-CCCHHHHHHHHHHH----cCCCEEEECCCCCChHHHHHHHHHHHhcc----CCeEEEECChHHHHHHHHHHHHH
Confidence 44677 59999999998876 68899999999999999999999887743 34899999999999999999998
Q ss_pred hccccCceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcCCCcEEEeCcHHHHHHHhhcCCCCCCCccEEEE
Q 017196 124 IAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVV 203 (375)
Q Consensus 124 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiV~Tp~~l~~~l~~~~~~~~~~~~~vIi 203 (375)
++. .+..++|+... ..+.+|+|+||++|.+++.+ ....++++++|||
T Consensus 152 ~~~----~vglltGd~~~----------------------------~~~~~IvV~Tpe~L~~~L~~-~~~~l~~l~lVVi 198 (1010)
T 2xgj_A 152 EFG----DVGLMTGDITI----------------------------NPDAGCLVMTTEILRSMLYR-GSEVMREVAWVIF 198 (1010)
T ss_dssp HHS----CEEEECSSCEE----------------------------CTTCSEEEEEHHHHHHHHHH-TCTTGGGEEEEEE
T ss_pred HhC----CEEEEeCCCcc----------------------------CCCCCEEEEcHHHHHHHHHc-CcchhhcCCEEEE
Confidence 765 57778887642 23568999999999998887 4567889999999
Q ss_pred ecchhhhhHhHHhHHHHHHHhhhcccccccccccccccccccccccccccccccCCCCCCCCceeEEEEEEecCCC
Q 017196 204 DETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQD 279 (375)
Q Consensus 204 DE~h~l~~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~ 279 (375)
||+|++.+..+...+..++..++. +.|++++|||+++.
T Consensus 199 DEaH~l~d~~rg~~~e~il~~l~~--------------------------------------~~~il~LSATi~n~ 236 (1010)
T 2xgj_A 199 DEVHYMRDKERGVVWEETIILLPD--------------------------------------KVRYVFLSATIPNA 236 (1010)
T ss_dssp ETGGGGGCTTTHHHHHHHHHHSCT--------------------------------------TCEEEEEECCCTTH
T ss_pred echhhhcccchhHHHHHHHHhcCC--------------------------------------CCeEEEEcCCCCCH
Confidence 999999888777777778777654 67899999999763
No 47
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=99.96 E-value=3.2e-27 Score=231.76 Aligned_cols=132 Identities=23% Similarity=0.270 Sum_probs=109.9
Q ss_pred CccHhhHHHHHHhhCCCCCCCCEEEECCCCCchHHHhHHHHHHHhhhcccCCceEEEEcccHHHHHHHHHHHHHhccccC
Q 017196 50 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVG 129 (375)
Q Consensus 50 ~~~~~Q~~~~~~~~~~~~~~~~~ii~a~TGsGKTl~~~l~il~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~ 129 (375)
+|+++|.++++.++. + ++++.+|||+|||++++.+++..+.. .+.++||++|+++|+.||.+.+++++...+
T Consensus 9 ~l~~~Q~~~i~~~~~----~-~~ll~~~tG~GKT~~~~~~~~~~~~~---~~~~~liv~P~~~L~~q~~~~~~~~~~~~~ 80 (494)
T 1wp9_A 9 QPRIYQEVIYAKCKE----T-NCLIVLPTGLGKTLIAMMIAEYRLTK---YGGKVLMLAPTKPLVLQHAESFRRLFNLPP 80 (494)
T ss_dssp CCCHHHHHHHHHGGG----S-CEEEECCTTSCHHHHHHHHHHHHHHH---SCSCEEEECSSHHHHHHHHHHHHHHBCSCG
T ss_pred CccHHHHHHHHHHhh----C-CEEEEcCCCCCHHHHHHHHHHHHHhc---CCCeEEEEECCHHHHHHHHHHHHHHhCcch
Confidence 799999999998874 4 99999999999999999998887762 345799999999999999999999875445
Q ss_pred ceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcCCCcEEEeCcHHHHHHHhhcCCCCCCCccEEEEecchhh
Q 017196 130 LSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRL 209 (375)
Q Consensus 130 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiV~Tp~~l~~~l~~~~~~~~~~~~~vIiDE~h~l 209 (375)
.++..++|+........ ...+++|+|+||+.+...+.. ..+.+..+++||+||||++
T Consensus 81 ~~v~~~~g~~~~~~~~~----------------------~~~~~~ivv~T~~~l~~~~~~-~~~~~~~~~~vIiDEaH~~ 137 (494)
T 1wp9_A 81 EKIVALTGEKSPEERSK----------------------AWARAKVIVATPQTIENDLLA-GRISLEDVSLIVFDEAHRA 137 (494)
T ss_dssp GGEEEECSCSCHHHHHH----------------------HHHHCSEEEECHHHHHHHHHT-TSCCTTSCSEEEEETGGGC
T ss_pred hheEEeeCCcchhhhhh----------------------hccCCCEEEecHHHHHHHHhc-CCcchhhceEEEEECCccc
Confidence 68888998876544321 223469999999999998887 4567889999999999999
Q ss_pred hhH
Q 017196 210 LRE 212 (375)
Q Consensus 210 ~~~ 212 (375)
.+.
T Consensus 138 ~~~ 140 (494)
T 1wp9_A 138 VGN 140 (494)
T ss_dssp STT
T ss_pred CCC
Confidence 755
No 48
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=99.95 E-value=1e-27 Score=253.75 Aligned_cols=157 Identities=17% Similarity=0.186 Sum_probs=131.8
Q ss_pred hCCCCCccHhhHHHHHHhhCCCCCCCCEEEECCCCCchHHHhHHHHHHHhhhcccCCceEEEEcccHHHHHHHHHHHHHh
Q 017196 45 NMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAI 124 (375)
Q Consensus 45 ~~g~~~~~~~Q~~~~~~~~~~~~~~~~~ii~a~TGsGKTl~~~l~il~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~ 124 (375)
.++| +|+++|.++++.+. .|+++++++|||+|||++|++++...+.. +.++||++|+++|+.|+++.++++
T Consensus 35 ~~~f-~l~~~Q~~aI~~il----~g~~vlv~apTGsGKTlv~~~~i~~~~~~----g~~vlvl~PtraLa~Q~~~~l~~~ 105 (997)
T 4a4z_A 35 SWPF-ELDTFQKEAVYHLE----QGDSVFVAAHTSAGKTVVAEYAIAMAHRN----MTKTIYTSPIKALSNQKFRDFKET 105 (997)
T ss_dssp CCSS-CCCHHHHHHHHHHH----TTCEEEEECCTTSCSHHHHHHHHHHHHHT----TCEEEEEESCGGGHHHHHHHHHTT
T ss_pred hCCC-CCCHHHHHHHHHHH----cCCCEEEEECCCCcHHHHHHHHHHHHHhc----CCeEEEEeCCHHHHHHHHHHHHHH
Confidence 4577 69999999998887 58999999999999999999988876543 347999999999999999999987
Q ss_pred ccccCceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcCCCcEEEeCcHHHHHHHhhcCCCCCCCccEEEEe
Q 017196 125 APAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVD 204 (375)
Q Consensus 125 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiV~Tp~~l~~~l~~~~~~~~~~~~~vIiD 204 (375)
+. ++++..++|+... ....+|+|+||++|.+.+.. ....++.+++||||
T Consensus 106 ~~--~~~v~~l~G~~~~----------------------------~~~~~IlV~Tpe~L~~~l~~-~~~~l~~l~lvViD 154 (997)
T 4a4z_A 106 FD--DVNIGLITGDVQI----------------------------NPDANCLIMTTEILRSMLYR-GADLIRDVEFVIFD 154 (997)
T ss_dssp C----CCEEEECSSCEE----------------------------CTTSSEEEEEHHHHHHHHHH-TCSGGGGEEEEEEC
T ss_pred cC--CCeEEEEeCCCcc----------------------------CCCCCEEEECHHHHHHHHHh-CchhhcCCCEEEEE
Confidence 65 6788889887632 34579999999999998877 44667899999999
Q ss_pred cchhhhhHhHHhHHHHHHHhhhcccccccccccccccccccccccccccccccCCCCCCCCceeEEEEEEecCCC
Q 017196 205 ETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQD 279 (375)
Q Consensus 205 E~h~l~~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~ 279 (375)
|||++.+.++...+..++..++. +.|++++|||+++.
T Consensus 155 EaH~l~d~~~g~~~e~ii~~l~~--------------------------------------~v~iIlLSAT~~n~ 191 (997)
T 4a4z_A 155 EVHYVNDQDRGVVWEEVIIMLPQ--------------------------------------HVKFILLSATVPNT 191 (997)
T ss_dssp CTTCCCTTCTTCCHHHHHHHSCT--------------------------------------TCEEEEEECCCTTH
T ss_pred CcccccccchHHHHHHHHHhccc--------------------------------------CCCEEEEcCCCCCh
Confidence 99999888888888888877765 67899999999753
No 49
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=99.95 E-value=2.2e-27 Score=250.90 Aligned_cols=146 Identities=21% Similarity=0.209 Sum_probs=114.1
Q ss_pred HHhCCCCCccHhhHHHHHHhhCCCCCCCCEEEECCCCCchHHHhHHHHHHHhhhcc-cCCceEEEEcccHHHHHHHHHHH
Q 017196 43 LQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRA-VRCLRALVVLPTRDLALQVKDVF 121 (375)
Q Consensus 43 l~~~g~~~~~~~Q~~~~~~~~~~~~~~~~~ii~a~TGsGKTl~~~l~il~~l~~~~-~~~~~~lil~Pt~~L~~Q~~~~~ 121 (375)
..-.|+.+|+++|.++++.++ .|+++++.+|||+|||++|++|++..+.... ..+.++|||+||++|+.|+++.+
T Consensus 241 ~~l~~~~~~r~~Q~~ai~~il----~g~~~ll~a~TGsGKTl~~~~~i~~~l~~~~~~~~~~vLvl~Pt~~L~~Q~~~~~ 316 (936)
T 4a2w_A 241 PPVYETKKARSYQIELAQPAI----NGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVF 316 (936)
T ss_dssp -------CCCHHHHHHHHHHH----TTCCEEEECCTTSCHHHHHHHHHHTTTTTCCSSCCCCEEEECSSHHHHHHHHHHH
T ss_pred ccccCCCCCCHHHHHHHHHHH----cCCCEEEEeCCCchHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHH
Confidence 334567899999999999887 5899999999999999999999998887652 12568999999999999999999
Q ss_pred HHhccccCceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcCCCcEEEeCcHHHHHHHhhcCCCCCCCccEE
Q 017196 122 AAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYL 201 (375)
Q Consensus 122 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiV~Tp~~l~~~l~~~~~~~~~~~~~v 201 (375)
+++++..++++..++|+....... +.+..+++|+|+||++|.+.+.......+..+++|
T Consensus 317 ~~~~~~~~~~v~~~~G~~~~~~~~---------------------~~~~~~~~IvI~Tp~~L~~~l~~~~~~~l~~~~li 375 (936)
T 4a2w_A 317 KHHFERQGYSVQGISGENFSNVSV---------------------EKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLM 375 (936)
T ss_dssp HHHHHTTTCCEEEECCC-----CC---------------------HHHHHHCSEEEECHHHHHHHHHSSSCCCGGGCSEE
T ss_pred HHHhcccCceEEEEECCcchhhHH---------------------HHhccCCCEEEecHHHHHHHHHcCccccccCCCEE
Confidence 999988889999999987543321 12334579999999999999987332378899999
Q ss_pred EEecchhhhhHh
Q 017196 202 VVDETDRLLREA 213 (375)
Q Consensus 202 IiDE~h~l~~~~ 213 (375)
|+||||++.+..
T Consensus 376 ViDEaH~~~~~~ 387 (936)
T 4a2w_A 376 IFDECHNTTGNH 387 (936)
T ss_dssp EEETGGGCSTTC
T ss_pred EEECccccCCCc
Confidence 999999997663
No 50
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=99.95 E-value=2.8e-27 Score=240.13 Aligned_cols=290 Identities=18% Similarity=0.147 Sum_probs=193.7
Q ss_pred hCCCCCccHhhHHHHHHhhCCCCCCCCEEEECCCCCchHHHhHHHHHHHhhhcccCCceEEEEcccHHHHHHHHHHHHHh
Q 017196 45 NMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAI 124 (375)
Q Consensus 45 ~~g~~~~~~~Q~~~~~~~~~~~~~~~~~ii~a~TGsGKTl~~~l~il~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~ 124 (375)
.+|+ .|+++|..+++.++ .|+ +..++||+|||++|++|++..... +..++||+||++||.|....+..+
T Consensus 79 ~lG~-~pt~VQ~~~ip~ll----~G~--Iaea~TGeGKTlaf~LP~~l~aL~----g~~vlVltptreLA~qd~e~~~~l 147 (844)
T 1tf5_A 79 VTGM-FPFKVQLMGGVALH----DGN--IAEMKTGEGKTLTSTLPVYLNALT----GKGVHVVTVNEYLASRDAEQMGKI 147 (844)
T ss_dssp HHSC-CCCHHHHHHHHHHH----TTS--EEECCTTSCHHHHHHHHHHHHHTT----SSCEEEEESSHHHHHHHHHHHHHH
T ss_pred HcCC-CCcHHHHHhhHHHh----CCC--EEEccCCcHHHHHHHHHHHHHHHc----CCCEEEEeCCHHHHHHHHHHHHHH
Confidence 5799 99999999998877 576 999999999999999999854433 347999999999999999999999
Q ss_pred ccccCceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcCCCcEEEeCcHHH-HHHHhhc-----CCCCCCCc
Q 017196 125 APAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRL-MDHINAT-----RGFTLEHL 198 (375)
Q Consensus 125 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiV~Tp~~l-~~~l~~~-----~~~~~~~~ 198 (375)
....|+++..++||.+.... ....+++|+||||++| .++++.. ..+.++.+
T Consensus 148 ~~~lgl~v~~i~gg~~~~~r-----------------------~~~~~~dIv~gTpgrlgfD~L~D~m~~~~~~l~lr~~ 204 (844)
T 1tf5_A 148 FEFLGLTVGLNLNSMSKDEK-----------------------REAYAADITYSTNNELGFDYLRDNMVLYKEQMVQRPL 204 (844)
T ss_dssp HHHTTCCEEECCTTSCHHHH-----------------------HHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCC
T ss_pred HhhcCCeEEEEeCCCCHHHH-----------------------HHhcCCCEEEECchhhhHHHHHHhhhcchhhhcccCC
Confidence 99999999999999765333 2223689999999999 6776542 23567899
Q ss_pred cEEEEecchhhh-hHh---------------HHhHHHHHHHhhhccc------cccccccc-------------cccccc
Q 017196 199 CYLVVDETDRLL-REA---------------YQAWLPTVLQLTRSDN------ENRFSDAS-------------TFLPSA 243 (375)
Q Consensus 199 ~~vIiDE~h~l~-~~~---------------~~~~l~~i~~~l~~~~------~~~~~~~~-------------~~~~~~ 243 (375)
.++|+||||.|+ +.+ |...+..++..++... ..+.-.++ ...+++
T Consensus 205 ~~lVlDEaD~mLiDea~tplIisg~~~~~~~~~~~i~~iv~~l~~~~~y~vd~k~rq~~lt~~g~~~~e~~~~i~~Lfsa 284 (844)
T 1tf5_A 205 HFAVIDEVDSILIDEARTPLIISGQAAKSTKLYVQANAFVRTLKAEKDYTYDIKTKAVQLTEEGMTKAEKAFGIDNLFDV 284 (844)
T ss_dssp CEEEEETHHHHHTTTTTCEEEEEEEEECCCHHHHHHHHHHTTCCSSSSBCCCSSSCCCCBCHHHHHHHHHHTTCSCTTSG
T ss_pred CEEEECchhhhhhhccccchhhcCCcccchhHHHHHHHHHHhCcccccceeccccceEEecHHHHHHHHHHhCccccCCC
Confidence 999999999997 543 5566777777775310 00000000 001222
Q ss_pred cccc--cc------------------------------ccccccccCC---------------CCCC------------C
Q 017196 244 FGSL--KT------------------------------IRRCGVERGF---------------KDKP------------Y 264 (375)
Q Consensus 244 ~~~~--~~------------------------------~~~~~~~~~~---------------~~~~------------~ 264 (375)
.... .. -.|.-.++-+ .+.. +
T Consensus 285 t~~~~~~~i~~al~A~~l~~~d~dYiv~dg~v~ivDe~tgr~m~grr~sdGLhqaieake~v~I~~e~~t~a~It~q~~f 364 (844)
T 1tf5_A 285 KHVALNHHINQALKAHVAMQKDVDYVVEDGQVVIVDSFTGRLMKGRRYSEGLHQAIEAKEGLEIQNESMTLATITFQNYF 364 (844)
T ss_dssp GGHHHHHHHHHHHHHHHTCCBTTTEEEETTEEEEBCTTTCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEEEHHHHH
T ss_pred ccchhHHHHHHHHHHHHHhhcCCceEEecCeeEEeecccccccCCCccchhhHHHHhhcccceecccccccceeeHHHHH
Confidence 1100 00 0011000000 0000 0
Q ss_pred C-ceeEEEEEEecCCCchhhhccccCCCeEEecCCccccCcccceeEEEeccCCCcHHHHHHHHHhc--CCCeEEEEcCC
Q 017196 265 P-RLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSL--GEEKCIVFTSS 341 (375)
Q Consensus 265 ~-~~q~i~~SATl~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~--~~~k~lIF~~s 341 (375)
. -.++.+||+|......++...+.-+ .+.+.... .....-...++.+....|...+...+... .+.++||||+|
T Consensus 365 r~y~kl~GmTGTa~te~~e~~~iY~l~--vv~IPtn~-p~~r~d~~d~v~~~~~~K~~al~~~i~~~~~~~~pvLVft~s 441 (844)
T 1tf5_A 365 RMYEKLAGMTGTAKTEEEEFRNIYNMQ--VVTIPTNR-PVVRDDRPDLIYRTMEGKFKAVAEDVAQRYMTGQPVLVGTVA 441 (844)
T ss_dssp TTSSEEEEEESCCGGGHHHHHHHHCCC--EEECCCSS-CCCCEECCCEEESSHHHHHHHHHHHHHHHHHHTCCEEEEESC
T ss_pred HHHhhhccCCcccchhHHHHHHHhCCc--eEEecCCC-CcccccCCcEEEeCHHHHHHHHHHHHHHHHhcCCcEEEEECC
Confidence 0 0246788888876666665444322 22222211 11111112244556677888888888652 45689999999
Q ss_pred hhhHHHHHHHHHHhcCCcceEEecccccccccc
Q 017196 342 VESTHRLCTLLNHFGELRIKIKEYSGLQRQSVR 374 (375)
Q Consensus 342 ~~~a~~l~~~L~~~g~~~~~~~~lh~~~~~~~R 374 (375)
++.++.++..|+. .|+++..+||++.+++|
T Consensus 442 ~~~se~Ls~~L~~---~gi~~~vLhg~~~~rEr 471 (844)
T 1tf5_A 442 VETSELISKLLKN---KGIPHQVLNAKNHEREA 471 (844)
T ss_dssp HHHHHHHHHHHHT---TTCCCEEECSSCHHHHH
T ss_pred HHHHHHHHHHHHH---CCCCEEEeeCCccHHHH
Confidence 9999999999994 55999999999988776
No 51
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=99.95 E-value=8.9e-27 Score=249.99 Aligned_cols=261 Identities=18% Similarity=0.162 Sum_probs=185.7
Q ss_pred CCHHHHHHH-HhCCCCCccHhhHHHHHHhhCCCCCCC--CEEEECCCCCchHHHhHHHHHHHhhhcccCCceEEEEcccH
Q 017196 35 LDPRLKVAL-QNMGISSLFPVQVAVWQETIGPGLFER--DLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTR 111 (375)
Q Consensus 35 l~~~i~~~l-~~~g~~~~~~~Q~~~~~~~~~~~~~~~--~~ii~a~TGsGKTl~~~l~il~~l~~~~~~~~~~lil~Pt~ 111 (375)
.+....+.+ ..++| +|+|+|.+|++.++..+.+|+ |++++++||+|||++|+++++..+..+ .+++|++||+
T Consensus 588 ~~~~~~~~~~~~f~~-~~t~~Q~~ai~~il~~~~~g~p~d~ll~~~TGsGKT~val~aa~~~~~~g----~~vlvlvPt~ 662 (1151)
T 2eyq_A 588 HDREQYQLFCDSFPF-ETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNH----KQVAVLVPTT 662 (1151)
T ss_dssp CCHHHHHHHHHTCCS-CCCHHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHHHHTTT----CEEEEECSSH
T ss_pred CCHHHHHHHHHhCCC-CCCHHHHHHHHHHHHHHhcCCcCcEEEECCCCCCHHHHHHHHHHHHHHhC----CeEEEEechH
Confidence 555565665 45788 679999999999885444465 999999999999999998888766543 4899999999
Q ss_pred HHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcC-CCcEEEeCcHHHHHHHhhc
Q 017196 112 DLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQS-AVDILVATPGRLMDHINAT 190 (375)
Q Consensus 112 ~L~~Q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~IiV~Tp~~l~~~l~~~ 190 (375)
+|++|+++.+++.+...++++..+++..+..... ..++.+.. .++|+||||+.+.
T Consensus 663 ~La~Q~~~~~~~~~~~~~i~v~~l~~~~~~~~~~------------------~~~~~l~~g~~dIvV~T~~ll~------ 718 (1151)
T 2eyq_A 663 LLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQT------------------QILAEVAEGKIDILIGTHKLLQ------ 718 (1151)
T ss_dssp HHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHH------------------HHHHHHHTTCCSEEEECTHHHH------
T ss_pred HHHHHHHHHHHHHhhcCCCeEEEEeCCCCHHHHH------------------HHHHHHhcCCCCEEEECHHHHh------
Confidence 9999999999998888889999988876654432 22233444 5899999997552
Q ss_pred CCCCCCCccEEEEecchhhhhHhHHhHHHHHHHhhhcccccccccccccccccccccccccccccccCCCCCCCCceeEE
Q 017196 191 RGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKM 270 (375)
Q Consensus 191 ~~~~~~~~~~vIiDE~h~l~~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i 270 (375)
..+.++++++|||||+|++.... ...+..++. +.+++
T Consensus 719 ~~~~~~~l~lvIiDEaH~~g~~~-----~~~l~~l~~--------------------------------------~~~vl 755 (1151)
T 2eyq_A 719 SDVKFKDLGLLIVDEEHRFGVRH-----KERIKAMRA--------------------------------------NVDIL 755 (1151)
T ss_dssp SCCCCSSEEEEEEESGGGSCHHH-----HHHHHHHHT--------------------------------------TSEEE
T ss_pred CCccccccceEEEechHhcChHH-----HHHHHHhcC--------------------------------------CCCEE
Confidence 34678899999999999974322 222333333 56799
Q ss_pred EEEEecCCCchhhhccccCCCeEEecCCccccCcccceeEEEeccCCCcHHHHHHHHHhc-CCCeEEEEcCChhhHHHHH
Q 017196 271 VLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSL-GEEKCIVFTSSVESTHRLC 349 (375)
Q Consensus 271 ~~SATl~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~-~~~k~lIF~~s~~~a~~l~ 349 (375)
+||||+++.........+.+...+...... ...+..++... .+......+++.. .+++++|||+++++++.++
T Consensus 756 ~lSATp~p~~l~~~~~~~~~~~~i~~~~~~---r~~i~~~~~~~---~~~~i~~~il~~l~~g~qvlvf~~~v~~~~~l~ 829 (1151)
T 2eyq_A 756 TLTATPIPRTLNMAMSGMRDLSIIATPPAR---RLAVKTFVREY---DSMVVREAILREILRGGQVYYLYNDVENIQKAA 829 (1151)
T ss_dssp EEESSCCCHHHHHHHTTTSEEEECCCCCCB---CBCEEEEEEEC---CHHHHHHHHHHHHTTTCEEEEECCCSSCHHHHH
T ss_pred EEcCCCChhhHHHHHhcCCCceEEecCCCC---ccccEEEEecC---CHHHHHHHHHHHHhcCCeEEEEECCHHHHHHHH
Confidence 999998776655555554444333222111 12233333222 2233333444433 4679999999999999999
Q ss_pred HHHHHhcCCcceEEecccccccccc
Q 017196 350 TLLNHFGELRIKIKEYSGLQRQSVR 374 (375)
Q Consensus 350 ~~L~~~g~~~~~~~~lh~~~~~~~R 374 (375)
+.|+... .++.+..+||+|++.+|
T Consensus 830 ~~L~~~~-p~~~v~~lhg~~~~~eR 853 (1151)
T 2eyq_A 830 ERLAELV-PEARIAIGHGQMREREL 853 (1151)
T ss_dssp HHHHHHC-TTSCEEECCSSCCHHHH
T ss_pred HHHHHhC-CCCeEEEEeCCCCHHHH
Confidence 9998762 25789999999999887
No 52
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=99.95 E-value=5.2e-27 Score=241.53 Aligned_cols=262 Identities=15% Similarity=0.162 Sum_probs=176.3
Q ss_pred CHHHHHHHHhCCCCCccHhhHHHHHHhhCCCCCC--CCEEEECCCCCchHHHhHHHHHHHhhhcccCCceEEEEcccHHH
Q 017196 36 DPRLKVALQNMGISSLFPVQVAVWQETIGPGLFE--RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDL 113 (375)
Q Consensus 36 ~~~i~~~l~~~g~~~~~~~Q~~~~~~~~~~~~~~--~~~ii~a~TGsGKTl~~~l~il~~l~~~~~~~~~~lil~Pt~~L 113 (375)
.+.+.+.+..++| +|+++|.++++.++..+..+ +++++++|||||||++|+++++..+..+ .+++|++||++|
T Consensus 355 ~~~~~~~~~~lpf-~lt~~Q~~ai~~I~~~l~~~~~~~~Ll~a~TGSGKTlvall~il~~l~~g----~qvlvlaPtr~L 429 (780)
T 1gm5_A 355 GKLAEEFIKSLPF-KLTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNYEAG----FQTAFMVPTSIL 429 (780)
T ss_dssp THHHHHHHHHSSS-CCCHHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHHHHHT----SCEEEECSCHHH
T ss_pred hHHHHHHHHhCCC-CCCHHHHHHHHHHHhhccccCCCcEEEEcCCCCCHHHHHHHHHHHHHHcC----CeEEEEeCcHHH
Confidence 4566666788999 99999999999987543333 5899999999999999999999888643 479999999999
Q ss_pred HHHHHHHHHHhccccCceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcC-CCcEEEeCcHHHHHHHhhcCC
Q 017196 114 ALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQS-AVDILVATPGRLMDHINATRG 192 (375)
Q Consensus 114 ~~Q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~IiV~Tp~~l~~~l~~~~~ 192 (375)
+.|+++.+++++...++++..++|+.+...... ++..+.. .++|+||||+.+.+ .
T Consensus 430 a~Q~~~~l~~~~~~~gi~v~~l~G~~~~~~r~~------------------~~~~l~~g~~~IvVgT~~ll~~------~ 485 (780)
T 1gm5_A 430 AIQHYRRTVESFSKFNIHVALLIGATTPSEKEK------------------IKSGLRNGQIDVVIGTHALIQE------D 485 (780)
T ss_dssp HHHHHHHHHHHHTCSSCCEEECCSSSCHHHHHH------------------HHHHHHSSCCCEEEECTTHHHH------C
T ss_pred HHHHHHHHHHHhhhcCceEEEEeCCCCHHHHHH------------------HHHHHhcCCCCEEEECHHHHhh------h
Confidence 999999999999888999999999987655422 2233444 58999999987643 3
Q ss_pred CCCCCccEEEEecchhhhhHhHHhHHHHHHHhhhcccccccccccccccccccccccccccccccCCCCCCCCceeEEEE
Q 017196 193 FTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVL 272 (375)
Q Consensus 193 ~~~~~~~~vIiDE~h~l~~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~ 272 (375)
+.+.++++||+||+|++..... ..+.. ...+.++++|
T Consensus 486 ~~~~~l~lVVIDEaHr~g~~qr--------~~l~~-----------------------------------~~~~~~vL~m 522 (780)
T 1gm5_A 486 VHFKNLGLVIIDEQHRFGVKQR--------EALMN-----------------------------------KGKMVDTLVM 522 (780)
T ss_dssp CCCSCCCEEEEESCCCC-------------CCCCS-----------------------------------SSSCCCEEEE
T ss_pred hhccCCceEEecccchhhHHHH--------HHHHH-----------------------------------hCCCCCEEEE
Confidence 5678999999999998632210 00000 0015679999
Q ss_pred EEecCCCchhhhccccCCCeEEecCCccccCcccceeEEEeccCCCcHHHHHHHHHh-c-CCCeEEEEcCChh-------
Q 017196 273 SATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQS-L-GEEKCIVFTSSVE------- 343 (375)
Q Consensus 273 SATl~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~-~-~~~k~lIF~~s~~------- 343 (375)
|||+.+...........+...+ .... .....+... .....+...+.+.+.. . .+++++|||++++
T Consensus 523 SATp~p~tl~~~~~g~~~~s~i--~~~p-~~r~~i~~~---~~~~~~~~~l~~~i~~~l~~g~qvlVf~~~ie~se~l~~ 596 (780)
T 1gm5_A 523 SATPIPRSMALAFYGDLDVTVI--DEMP-PGRKEVQTM---LVPMDRVNEVYEFVRQEVMRGGQAFIVYPLIEESDKLNV 596 (780)
T ss_dssp ESSCCCHHHHHHHTCCSSCEEE--CCCC-SSCCCCEEC---CCCSSTHHHHHHHHHHHTTTSCCBCCBCCCC--------
T ss_pred eCCCCHHHHHHHHhCCcceeee--eccC-CCCcceEEE---EeccchHHHHHHHHHHHHhcCCcEEEEecchhhhhhhhH
Confidence 9998654333222111111111 1110 001122222 2223344555555553 2 4678999999764
Q ss_pred -hHHHHHHHHHHhcCCcceEEeccccccccccC
Q 017196 344 -STHRLCTLLNHFGELRIKIKEYSGLQRQSVRR 375 (375)
Q Consensus 344 -~a~~l~~~L~~~g~~~~~~~~lh~~~~~~~R~ 375 (375)
.++.+++.|....-.++.+..+||+|++.+|+
T Consensus 597 ~~a~~l~~~L~~~~~~~~~v~~lHG~m~~~eR~ 629 (780)
T 1gm5_A 597 KSAVEMYEYLSKEVFPEFKLGLMHGRLSQEEKD 629 (780)
T ss_dssp CHHHHHHHSGGGSCC---CBCCCCSSSCCSCSH
T ss_pred HHHHHHHHHHHhhhcCCCcEEEEeCCCCHHHHH
Confidence 47788888875111357899999999998873
No 53
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=99.94 E-value=1.4e-26 Score=234.42 Aligned_cols=148 Identities=23% Similarity=0.204 Sum_probs=111.9
Q ss_pred hCCCCCccHhhHHHHHHhhCCCCCCCCEEEECCCCCchHHHhHHHHHHHhhhcccCCceEEEEcccHHHHHHHHHHHHHh
Q 017196 45 NMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAI 124 (375)
Q Consensus 45 ~~g~~~~~~~Q~~~~~~~~~~~~~~~~~ii~a~TGsGKTl~~~l~il~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~ 124 (375)
.+|. .|+++|..+++.++ .|+ +..++||+|||++|++|++..... +.+++|++||++||.|.+..+..+
T Consensus 70 ~lg~-~p~~VQ~~~i~~ll----~G~--Iaem~TGsGKTlaf~LP~l~~~l~----g~~vlVltPTreLA~Q~~e~~~~l 138 (853)
T 2fsf_A 70 VFGM-RHFDVQLLGGMVLN----ERC--IAEMRTGEGKTLTATLPAYLNALT----GKGVHVVTVNDYLAQRDAENNRPL 138 (853)
T ss_dssp HHSC-CCCHHHHHHHHHHH----SSE--EEECCTTSCHHHHHHHHHHHHHTT----SSCCEEEESSHHHHHHHHHHHHHH
T ss_pred HcCC-CCChHHHhhccccc----CCe--eeeecCCchHHHHHHHHHHHHHHc----CCcEEEEcCCHHHHHHHHHHHHHH
Confidence 3575 99999999998777 566 999999999999999999865543 347999999999999999999999
Q ss_pred ccccCceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcCCCcEEEeCcHHH-HHHHhhcC-----CCCCCCc
Q 017196 125 APAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRL-MDHINATR-----GFTLEHL 198 (375)
Q Consensus 125 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiV~Tp~~l-~~~l~~~~-----~~~~~~~ 198 (375)
+...++++..++||.+.... .+..+++|+||||++| .++++..- .+.++.+
T Consensus 139 ~~~lgl~v~~i~GG~~~~~r-----------------------~~~~~~dIvvgTpgrl~fDyLrd~~~~~~~~~~~~~l 195 (853)
T 2fsf_A 139 FEFLGLTVGINLPGMPAPAK-----------------------REAYAADITYGTNNEYGFDYLRDNMAFSPEERVQRKL 195 (853)
T ss_dssp HHHTTCCEEECCTTCCHHHH-----------------------HHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCSC
T ss_pred HHhcCCeEEEEeCCCCHHHH-----------------------HHhcCCCEEEECCchhhHHHHHhhhhccHhHhcccCC
Confidence 99999999999999765322 2233589999999999 78887532 2557899
Q ss_pred cEEEEecchhhh-hHh---------------HHhHHHHHHHhhh
Q 017196 199 CYLVVDETDRLL-REA---------------YQAWLPTVLQLTR 226 (375)
Q Consensus 199 ~~vIiDE~h~l~-~~~---------------~~~~l~~i~~~l~ 226 (375)
.++|+||||.++ +.+ +...+..++..++
T Consensus 196 ~~lVlDEaD~mLiD~a~tpLIiSg~~~~~~~~y~~i~~iv~~L~ 239 (853)
T 2fsf_A 196 HYALVDEVDSILIDEARTPLIISGPAEDSSEMYKRVNKIIPHLI 239 (853)
T ss_dssp CEEEESCHHHHTTTTTTCEEEEEEC-------------------
T ss_pred cEEEECchHHHHHhcCcccccccCCCccchhHHHHHHHHHHhch
Confidence 999999999998 432 4455566666654
No 54
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=99.94 E-value=7.8e-27 Score=240.61 Aligned_cols=137 Identities=21% Similarity=0.272 Sum_probs=108.3
Q ss_pred CccHhhHHHHHHhhCCCCCCCCEEEECCCCCchHHHhHHHHHHHhhhcc--cCCceEEEEcccHHHHHHH-HHHHHHhcc
Q 017196 50 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRA--VRCLRALVVLPTRDLALQV-KDVFAAIAP 126 (375)
Q Consensus 50 ~~~~~Q~~~~~~~~~~~~~~~~~ii~a~TGsGKTl~~~l~il~~l~~~~--~~~~~~lil~Pt~~L~~Q~-~~~~~~~~~ 126 (375)
+|+++|.++++.++ .|+++++.+|||+|||++|++|++..+.... ..+.++||++|+++|+.|+ .+.++++++
T Consensus 7 ~l~~~Q~~~i~~il----~g~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~vlvl~P~~~L~~Q~~~~~l~~~~~ 82 (699)
T 4gl2_A 7 QLRPYQMEVAQPAL----EGKNIIICLPTGCGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPFLK 82 (699)
T ss_dssp CCCHHHHHHHHHHH----SSCCEEECCCTTSCHHHHHHHHHHHHHHHHHHHTCCCCBCCEESCSHHHHHHHHHTHHHHHT
T ss_pred CccHHHHHHHHHHH----hCCCEEEEcCCCCcHHHHHHHHHHHHHHhccccCCCCeEEEEECCHHHHHHHHHHHHHHHcC
Confidence 89999999999988 4889999999999999999999998887652 1235799999999999999 999999887
Q ss_pred ccCceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcCCCcEEEeCcHHHHHHHhh-----cCCCCCCCccEE
Q 017196 127 AVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINA-----TRGFTLEHLCYL 201 (375)
Q Consensus 127 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiV~Tp~~l~~~l~~-----~~~~~~~~~~~v 201 (375)
. ++++..++|+...... ...+..+++|+|+||++|.+.+.+ ...+.+..+++|
T Consensus 83 ~-~~~v~~~~g~~~~~~~---------------------~~~~~~~~~Ilv~Tp~~L~~~l~~~~~~~~~~~~~~~~~lv 140 (699)
T 4gl2_A 83 K-WYRVIGLSGDTQLKIS---------------------FPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLI 140 (699)
T ss_dssp T-TSCEEEEC----CCCC---------------------HHHHHHSCSEEEEEHHHHHHHTC--------CCCGGGCSEE
T ss_pred c-CceEEEEeCCcchhhH---------------------HHhhhcCCCEEEECHHHHHHHHhccccccccceecccCcEE
Confidence 5 5889999988643221 123345689999999999988742 234678899999
Q ss_pred EEecchhhhhH
Q 017196 202 VVDETDRLLRE 212 (375)
Q Consensus 202 IiDE~h~l~~~ 212 (375)
||||||++...
T Consensus 141 ViDEaH~~~~~ 151 (699)
T 4gl2_A 141 IIDECHHTNKE 151 (699)
T ss_dssp EEESGGGCBTT
T ss_pred EEECccccCcc
Confidence 99999998554
No 55
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=99.93 E-value=1.6e-25 Score=227.07 Aligned_cols=290 Identities=17% Similarity=0.127 Sum_probs=193.8
Q ss_pred hCCCCCccHhhHHHHHHhhCCCCCCCCEEEECCCCCchHHHhHHHHHHHhhhcccCCceEEEEcccHHHHHHHHHHHHHh
Q 017196 45 NMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAI 124 (375)
Q Consensus 45 ~~g~~~~~~~Q~~~~~~~~~~~~~~~~~ii~a~TGsGKTl~~~l~il~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~ 124 (375)
.+|+ .|+++|..+++.++ .|+ +..++||+|||++|++|++.....+ ..++|++||++||.|....+..+
T Consensus 107 ~lG~-rP~~VQ~~~ip~Ll----~G~--Iaem~TGeGKTLa~~LP~~l~aL~g----~~v~VvTpTreLA~Qdae~m~~l 175 (922)
T 1nkt_A 107 VLDQ-RPFDVQVMGAAALH----LGN--VAEMKTGEGKTLTCVLPAYLNALAG----NGVHIVTVNDYLAKRDSEWMGRV 175 (922)
T ss_dssp HHSC-CCCHHHHHHHHHHH----TTE--EEECCTTSCHHHHTHHHHHHHHTTT----SCEEEEESSHHHHHHHHHHHHHH
T ss_pred HcCC-CCCHHHHHHHHhHh----cCC--EEEecCCCccHHHHHHHHHHHHHhC----CCeEEEeCCHHHHHHHHHHHHHH
Confidence 4788 99999999998777 466 9999999999999999997655443 36999999999999999999999
Q ss_pred ccccCceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcCCCcEEEeCcHHH-HHHHhhcC-----CCCCCCc
Q 017196 125 APAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRL-MDHINATR-----GFTLEHL 198 (375)
Q Consensus 125 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiV~Tp~~l-~~~l~~~~-----~~~~~~~ 198 (375)
....|+++..++|+.+.... ....+++|++|||+.| +++++..- .+.++.+
T Consensus 176 ~~~lGLsv~~i~gg~~~~~r-----------------------~~~y~~DIvygTpgrlgfDyLrD~m~~~~~~l~lr~l 232 (922)
T 1nkt_A 176 HRFLGLQVGVILATMTPDER-----------------------RVAYNADITYGTNNEFGFDYLRDNMAHSLDDLVQRGH 232 (922)
T ss_dssp HHHTTCCEEECCTTCCHHHH-----------------------HHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCC
T ss_pred HhhcCCeEEEEeCCCCHHHH-----------------------HHhcCCCEEEECchHhhHHHHHhhhhccHhhhccCCC
Confidence 99999999999998764322 2223579999999999 78887632 3567899
Q ss_pred cEEEEecchhhh-h---------------HhHHhHHHHHHHhhhccc------cccccccc-------------cccccc
Q 017196 199 CYLVVDETDRLL-R---------------EAYQAWLPTVLQLTRSDN------ENRFSDAS-------------TFLPSA 243 (375)
Q Consensus 199 ~~vIiDE~h~l~-~---------------~~~~~~l~~i~~~l~~~~------~~~~~~~~-------------~~~~~~ 243 (375)
.++||||||.|+ + .+|...+..++..++... ..+.-.+. ...+++
T Consensus 233 ~~lIVDEaDsmLiDeartPLiiSg~~~~~~~~y~~i~~iv~~L~~~~dy~vDek~rqv~Lte~G~~~~e~~l~i~~Lfsa 312 (922)
T 1nkt_A 233 HYAIVDEVDSILIDEARTPLIISGPADGASNWYTEFARLAPLMEKDVHYEVDLRKRTVGVHEKGVEFVEDQLGIDNLYEA 312 (922)
T ss_dssp CEEEETTHHHHHTTGGGSCEEEEEECCCCHHHHHHHHHHHHHSCBTTTEEEETTTTEEEECHHHHHHHHHHHTCSSTTCS
T ss_pred CEEEEeChHHHHHhcCccceeecCCCCcchhHHHHHHHHHHhCcccccceeccCcceEEecHhHHHHHHHHhCCccccCC
Confidence 999999999998 3 246677888888876210 00000000 001111
Q ss_pred cccc--cc------------------------------cccccccc---------------CCCCCC------------C
Q 017196 244 FGSL--KT------------------------------IRRCGVER---------------GFKDKP------------Y 264 (375)
Q Consensus 244 ~~~~--~~------------------------------~~~~~~~~---------------~~~~~~------------~ 264 (375)
.... .. -.|.-.++ ...+.. +
T Consensus 313 t~~~l~~~i~~aL~A~~l~~~d~dYiV~dg~vviVDe~TGR~m~grr~sdGLHQaieaKe~V~I~~e~~TlatIt~Qnyf 392 (922)
T 1nkt_A 313 ANSPLVSYLNNALKAKELFSRDKDYIVRDGEVLIVDEFTGRVLIGRRYNEGMHQAIEAKEHVEIKAENQTLATITLQNYF 392 (922)
T ss_dssp TTCCHHHHHHHHHHHHHHCCBTTTEEECSSCEEEBCSSSCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEECHHHHH
T ss_pred cchhHHHHHHHHHHHHHHhhcccceeeecCceEEEecccCcccCCccccchhhHHHhccccccccccccccceeehHHHH
Confidence 1100 00 00110000 000000 0
Q ss_pred C-ceeEEEEEEecCCCchhhhccccCCCeEEecCCccccCcccceeEEEeccCCCcHHHHHHHHHhc--CCCeEEEEcCC
Q 017196 265 P-RLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSL--GEEKCIVFTSS 341 (375)
Q Consensus 265 ~-~~q~i~~SATl~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~--~~~k~lIF~~s 341 (375)
. -.++.+||+|......++...+ +...+.+..... ....-...++......|...+.+.+... .+.++||||+|
T Consensus 393 r~Y~kL~GMTGTa~te~~Ef~~iY--~l~vv~IPtn~p-~~R~d~~d~v~~t~~~K~~al~~~i~~~~~~gqpvLVft~S 469 (922)
T 1nkt_A 393 RLYDKLAGMTGTAQTEAAELHEIY--KLGVVSIPTNMP-MIREDQSDLIYKTEEAKYIAVVDDVAERYAKGQPVLIGTTS 469 (922)
T ss_dssp TTSSEEEEEESCCGGGHHHHHHHH--CCEEEECCCSSC-CCCEECCCEEESCHHHHHHHHHHHHHHHHHTTCCEEEEESC
T ss_pred HhhhhhhccccCchhHHHHHHHHh--CCCeEEeCCCCC-cccccCCcEEEeCHHHHHHHHHHHHHHHHhcCCcEEEEECC
Confidence 0 0246788888866555554444 222333333221 1111122234556677888888888653 45689999999
Q ss_pred hhhHHHHHHHHHHhcCCcceEEecccccccccc
Q 017196 342 VESTHRLCTLLNHFGELRIKIKEYSGLQRQSVR 374 (375)
Q Consensus 342 ~~~a~~l~~~L~~~g~~~~~~~~lh~~~~~~~R 374 (375)
++.++.+++.|+..| +++..+||++.+++|
T Consensus 470 ie~sE~Ls~~L~~~G---i~~~vLnak~~~rEa 499 (922)
T 1nkt_A 470 VERSEYLSRQFTKRR---IPHNVLNAKYHEQEA 499 (922)
T ss_dssp HHHHHHHHHHHHHTT---CCCEEECSSCHHHHH
T ss_pred HHHHHHHHHHHHHCC---CCEEEecCChhHHHH
Confidence 999999999999655 999999999877665
No 56
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=99.93 E-value=5.9e-26 Score=225.74 Aligned_cols=245 Identities=18% Similarity=0.195 Sum_probs=166.3
Q ss_pred CCccHhhHHHHHHhhCCCCCCCCEEEECCCCCchHHHhHHHHHHHhhhcccCCceEEEEcccHHHHHHHHHHHHHhcccc
Q 017196 49 SSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAV 128 (375)
Q Consensus 49 ~~~~~~Q~~~~~~~~~~~~~~~~~ii~a~TGsGKTl~~~l~il~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~ 128 (375)
.+|+++|.+|++.++ .++++++++|||+|||++|+.++...+... +.++|||+||++|+.|+++.++++....
T Consensus 112 ~~l~~~Q~~ai~~~~----~~~~~ll~~~tGsGKT~~~~~~~~~~~~~~---~~~vlvl~P~~~L~~Q~~~~~~~~~~~~ 184 (510)
T 2oca_A 112 IEPHWYQKDAVFEGL----VNRRRILNLPTSAGRSLIQALLARYYLENY---EGKILIIVPTTALTTQMADDFVDYRLFS 184 (510)
T ss_dssp ECCCHHHHHHHHHHH----HHSEEEEECCSTTTHHHHHHHHHHHHHHHC---SSEEEEEESSHHHHHHHHHHHHHTTSSC
T ss_pred CCCCHHHHHHHHHHH----hcCCcEEEeCCCCCHHHHHHHHHHHHHhCC---CCeEEEEECcHHHHHHHHHHHHHhhcCC
Confidence 389999999999887 468999999999999999999888877543 2389999999999999999999986655
Q ss_pred CceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcCCCcEEEeCcHHHHHHHhhcCCCCCCCccEEEEecchh
Q 017196 129 GLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDR 208 (375)
Q Consensus 129 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiV~Tp~~l~~~l~~~~~~~~~~~~~vIiDE~h~ 208 (375)
+..+..++|+..... ....+.+|+|+||+.+... ....++++++|||||+|+
T Consensus 185 ~~~v~~~~~~~~~~~------------------------~~~~~~~I~i~T~~~l~~~----~~~~~~~~~liIiDE~H~ 236 (510)
T 2oca_A 185 HAMIKKIGGGASKDD------------------------KYKNDAPVVVGTWQTVVKQ----PKEWFSQFGMMMNDECHL 236 (510)
T ss_dssp GGGEEECGGGCCTTG------------------------GGCTTCSEEEEEHHHHTTS----CGGGGGGEEEEEEETGGG
T ss_pred ccceEEEecCCcccc------------------------ccccCCcEEEEeHHHHhhc----hhhhhhcCCEEEEECCcC
Confidence 678888888754211 1345689999999975432 224567899999999999
Q ss_pred hhhHhHHhHHHHHHHhhhcccccccccccccccccccccccccccccccCCCCCCCCceeEEEEEEecCCCchhhhc-cc
Q 017196 209 LLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQ-LD 287 (375)
Q Consensus 209 l~~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~~~~~~~-~~ 287 (375)
+.... +..++..+.. ..+++++|||++........ ..
T Consensus 237 ~~~~~----~~~il~~~~~--------------------------------------~~~~l~lSATp~~~~~~~~~~~~ 274 (510)
T 2oca_A 237 ATGKS----ISSIISGLNN--------------------------------------CMFKFGLSGSLRDGKANIMQYVG 274 (510)
T ss_dssp CCHHH----HHHHGGGCTT--------------------------------------CCEEEEEESCGGGCSSCHHHHHH
T ss_pred CCccc----HHHHHHhccc--------------------------------------CcEEEEEEeCCCCCcccHHHhHH
Confidence 97744 3444444432 45789999999765433211 11
Q ss_pred cCCCeEEecCCcc-----ccCcccceeEEE---------------------eccCCCcHHHHHHHHHhc---CCCeEEEE
Q 017196 288 LHHPLFLTTGETR-----YKLPERLESYKL---------------------ICESKLKPLYLVALLQSL---GEEKCIVF 338 (375)
Q Consensus 288 ~~~~~~i~~~~~~-----~~~~~~i~~~~~---------------------~~~~~~k~~~l~~ll~~~---~~~k~lIF 338 (375)
+.++......... ...+..+..... ......+...+.+++... .+.++|||
T Consensus 275 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~ivf 354 (510)
T 2oca_A 275 MFGEIFKPVTTSKLMEDGQVTELKINSIFLRYPDEFTTKLKGKTYQEEIKIITGLSKRNKWIAKLAIKLAQKDENAFVMF 354 (510)
T ss_dssp HHCSEECCCCCC---------CCEEEEEEEECCHHHHHHHTTCCHHHHHHHHHTCHHHHHHHHHHHHHHHTTTCEEEEEE
T ss_pred hhCCeEEeeCHHHHhhCCcCCCceEEEEeecCChHHhccccccchHHHHHHHhccHHHHHHHHHHHHHHHhcCCCeEEEE
Confidence 2233322222110 000001111111 111223344455666554 44467777
Q ss_pred cCChhhHHHHHHHHHHhcCCcceEEecccccccccc
Q 017196 339 TSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVR 374 (375)
Q Consensus 339 ~~s~~~a~~l~~~L~~~g~~~~~~~~lh~~~~~~~R 374 (375)
|+ +++|+.+++.|...+ ..+..+||+|+..+|
T Consensus 355 ~~-~~~~~~l~~~L~~~~---~~v~~~~g~~~~~~r 386 (510)
T 2oca_A 355 KH-VSHGKAIFDLIKNEY---DKVYYVSGEVDTETR 386 (510)
T ss_dssp SS-HHHHHHHHHHHHTTC---SSEEEESSSTTHHHH
T ss_pred ec-HHHHHHHHHHHHHcC---CCeEEEECCCCHHHH
Confidence 77 999999999999544 589999999998877
No 57
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=99.93 E-value=1.1e-25 Score=221.66 Aligned_cols=225 Identities=24% Similarity=0.257 Sum_probs=159.2
Q ss_pred CccHhhHHHHHHhhCCCCCCCCEEEECCCCCchHHHhHHHHHHHhhhcccCCceEEEEcccHHHHHHHHHHHHHhccccC
Q 017196 50 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVG 129 (375)
Q Consensus 50 ~~~~~Q~~~~~~~~~~~~~~~~~ii~a~TGsGKTl~~~l~il~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~ 129 (375)
+|+++|.++++.++ .++++++++|||+|||++|+.++... +.++||++|+++|+.||.+.++++ +
T Consensus 93 ~l~~~Q~~ai~~i~----~~~~~ll~~~TGsGKT~~~l~~i~~~-------~~~~Lvl~P~~~L~~Q~~~~~~~~----~ 157 (472)
T 2fwr_A 93 SLRDYQEKALERWL----VDKRGCIVLPTGSGKTHVAMAAINEL-------STPTLIVVPTLALAEQWKERLGIF----G 157 (472)
T ss_dssp CBCHHHHHHHHHHT----TTTEEEEECCTTSCHHHHHHHHHHHH-------CSCEEEEESSHHHHHHHHHHGGGG----C
T ss_pred CcCHHHHHHHHHHH----hcCCEEEEeCCCCCHHHHHHHHHHHc-------CCCEEEEECCHHHHHHHHHHHHhC----C
Confidence 79999999998877 45679999999999999998887754 247999999999999999999984 6
Q ss_pred ce-EEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcCCCcEEEeCcHHHHHHHhhcCCCCCCCccEEEEecchh
Q 017196 130 LS-VGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDR 208 (375)
Q Consensus 130 ~~-v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiV~Tp~~l~~~l~~~~~~~~~~~~~vIiDE~h~ 208 (375)
++ +..++|+.. ...+|+|+||+.+...+... ...+++|||||+|+
T Consensus 158 ~~~v~~~~g~~~------------------------------~~~~Ivv~T~~~l~~~~~~~----~~~~~liIvDEaH~ 203 (472)
T 2fwr_A 158 EEYVGEFSGRIK------------------------------ELKPLTVSTYDSAYVNAEKL----GNRFMLLIFDEVHH 203 (472)
T ss_dssp GGGEEEBSSSCB------------------------------CCCSEEEEEHHHHHHTHHHH----TTTCSEEEEETGGG
T ss_pred CcceEEECCCcC------------------------------CcCCEEEEEcHHHHHHHHHh----cCCCCEEEEECCcC
Confidence 77 888887753 34689999999988776542 14588999999999
Q ss_pred hhhHhHHhHHHHHHHhhhcccccccccccccccccccccccccccccccCCCCCCCCceeEEEEEEecCC----------
Q 017196 209 LLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQ---------- 278 (375)
Q Consensus 209 l~~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~---------- 278 (375)
+.+..|.. +...++ ..+++++|||+..
T Consensus 204 ~~~~~~~~----~~~~~~---------------------------------------~~~~l~lSATp~~~~~~~~~l~~ 240 (472)
T 2fwr_A 204 LPAESYVQ----IAQMSI---------------------------------------APFRLGLTATFEREDGRHEILKE 240 (472)
T ss_dssp TTSTTTHH----HHHTCC---------------------------------------CSEEEEEESCCCCTTSGGGSHHH
T ss_pred CCChHHHH----HHHhcC---------------------------------------CCeEEEEecCccCCCCHHHHHHH
Confidence 98877643 333332 2468999999973
Q ss_pred ---------CchhhhccccCCCeEE--ecCCccc-----------------------cCcccceeEE-------------
Q 017196 279 ---------DPNKLAQLDLHHPLFL--TTGETRY-----------------------KLPERLESYK------------- 311 (375)
Q Consensus 279 ---------~~~~~~~~~~~~~~~i--~~~~~~~-----------------------~~~~~i~~~~------------- 311 (375)
...++...++..+... .+..... .....+...+
T Consensus 241 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (472)
T 2fwr_A 241 VVGGKVFELFPDSLAGKHLAKYTIKRIFVPLAEDERVEYEKREKVYKQFLRARGITLRRAEDFNKIVMASGYDERAYEAL 320 (472)
T ss_dssp HTCCEEEECCHHHHTSCCCCSEEECCEEECCCHHHHHHTTTTTHHHHSCSSSCCCTTTCCSSSTTTTTTTCCSSSSSTTT
T ss_pred HhCCeEeecCHHHHhcCcCCCeEEEEEEcCCCHHHHHHHHHHHHHHHHHHHhcCccccchhhHHHHHHHhccCHHHHHHH
Confidence 2222322223222211 1110000 0000000000
Q ss_pred --------EeccCCCcHHHHHHHHHhcCCCeEEEEcCChhhHHHHHHHHHHhcCCcceEEecccccccccc
Q 017196 312 --------LICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVR 374 (375)
Q Consensus 312 --------~~~~~~~k~~~l~~ll~~~~~~k~lIF~~s~~~a~~l~~~L~~~g~~~~~~~~lh~~~~~~~R 374 (375)
..+....|...+.++++...++++||||+++++++.+++.|. +..+||+++..+|
T Consensus 321 ~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~k~lvF~~~~~~~~~l~~~l~--------~~~~~g~~~~~~R 383 (472)
T 2fwr_A 321 RAWEEARRIAFNSKNKIRKLREILERHRKDKIIIFTRHNELVYRISKVFL--------IPAITHRTSREER 383 (472)
T ss_dssp HHHHHHHHHHHSCSHHHHHHHHHHHHTSSSCBCCBCSCHHHHHHHHHHTT--------CCBCCSSSCSHHH
T ss_pred HHHHHHHHHhhcChHHHHHHHHHHHhCCCCcEEEEECCHHHHHHHHHHhC--------cceeeCCCCHHHH
Confidence 012344567788888888778899999999999999999885 5579999998877
No 58
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=99.92 E-value=7.4e-25 Score=220.23 Aligned_cols=220 Identities=16% Similarity=0.207 Sum_probs=154.3
Q ss_pred CccHhhHHHHHHhhCCCCCCCCEEEECCCCCchHHHhHHHHHHHhhhcccCCceEEEEcccHHHHHHHHHHHHHhccccC
Q 017196 50 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVG 129 (375)
Q Consensus 50 ~~~~~Q~~~~~~~~~~~~~~~~~ii~a~TGsGKTl~~~l~il~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~ 129 (375)
.++++|.. +++.+.++++++++||||||||.+|.+++++ ++.+++|++||++||.|+++.+.+.. +
T Consensus 217 P~~~~q~~----i~~~L~~~~~vlv~ApTGSGKT~a~~l~ll~-------~g~~vLVl~PTReLA~Qia~~l~~~~---g 282 (666)
T 3o8b_A 217 PVFTDNSS----PPAVPQSFQVAHLHAPTGSGKSTKVPAAYAA-------QGYKVLVLNPSVAATLGFGAYMSKAH---G 282 (666)
T ss_dssp CSCCCCCS----CCCCCSSCEEEEEECCTTSCTTTHHHHHHHH-------TTCCEEEEESCHHHHHHHHHHHHHHH---S
T ss_pred CcHHHHHH----HHHHHHcCCeEEEEeCCchhHHHHHHHHHHH-------CCCeEEEEcchHHHHHHHHHHHHHHh---C
Confidence 55566655 3566668899999999999999999988875 23479999999999999998776543 4
Q ss_pred ceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcCCCcEEEeCcHHHHHHHhhcCCCCCCCccEEEEecchhh
Q 017196 130 LSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRL 209 (375)
Q Consensus 130 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiV~Tp~~l~~~l~~~~~~~~~~~~~vIiDE~h~l 209 (375)
..+...+|+.. ...+.+|+|+||++|. .. ..+.++++++||+||||++
T Consensus 283 ~~vg~~vG~~~----------------------------~~~~~~IlV~TPGrLl---~~-~~l~l~~l~~lVlDEAH~l 330 (666)
T 3o8b_A 283 IDPNIRTGVRT----------------------------ITTGAPVTYSTYGKFL---AD-GGCSGGAYDIIICDECHST 330 (666)
T ss_dssp CCCEEECSSCE----------------------------ECCCCSEEEEEHHHHH---HT-TSCCTTSCSEEEETTTTCC
T ss_pred CCeeEEECcEe----------------------------ccCCCCEEEECcHHHH---hC-CCcccCcccEEEEccchhc
Confidence 55566666542 3456899999999973 33 5577889999999999755
Q ss_pred hhHhHHhHHHHHHHhhhcccccccccccccccccccccccccccccccCCCCCCCCceeEEEEEEecCCCchhhhccccC
Q 017196 210 LREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLH 289 (375)
Q Consensus 210 ~~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~~~~~~~~~~~ 289 (375)
+.++...+..+++.++...+ ..+++||||++..+.. .
T Consensus 331 -~~~~~~~l~~Il~~l~~~~~------------------------------------~llil~SAT~~~~i~~------~ 367 (666)
T 3o8b_A 331 -DSTTILGIGTVLDQAETAGA------------------------------------RLVVLATATPPGSVTV------P 367 (666)
T ss_dssp -SHHHHHHHHHHHHHTTTTTC------------------------------------SEEEEEESSCTTCCCC------C
T ss_pred -CccHHHHHHHHHHhhhhcCC------------------------------------ceEEEECCCCCccccc------C
Confidence 66777778888888765321 2367889999874321 1
Q ss_pred CCeEEecCCccccCcccceeEEEeccCCCcHHHHHHHHHhcCCCeEEEEcCChhhHHHHHHHHHHhcCCcceEEeccccc
Q 017196 290 HPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQ 369 (375)
Q Consensus 290 ~~~~i~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~k~lIF~~s~~~a~~l~~~L~~~g~~~~~~~~lh~~~ 369 (375)
.+....+.... ...+... ..... +.....+++||||+++++|+.+++.|+. .++.+..+||+|
T Consensus 368 ~p~i~~v~~~~---~~~i~~~----~~~~~-------l~~~~~~~vLVFv~Tr~~ae~la~~L~~---~g~~v~~lHG~l 430 (666)
T 3o8b_A 368 HPNIEEVALSN---TGEIPFY----GKAIP-------IEAIRGGRHLIFCHSKKKCDELAAKLSG---LGINAVAYYRGL 430 (666)
T ss_dssp CTTEEEEECBS---CSSEEET----TEEEC-------GGGSSSSEEEEECSCHHHHHHHHHHHHT---TTCCEEEECTTS
T ss_pred CcceEEEeecc---cchhHHH----Hhhhh-------hhhccCCcEEEEeCCHHHHHHHHHHHHh---CCCcEEEecCCC
Confidence 11111111000 0011100 00000 2233577999999999999999999995 459999999999
Q ss_pred cccccC
Q 017196 370 RQSVRR 375 (375)
Q Consensus 370 ~~~~R~ 375 (375)
++++|.
T Consensus 431 ~q~er~ 436 (666)
T 3o8b_A 431 DVSVIP 436 (666)
T ss_dssp CGGGSC
T ss_pred CHHHHH
Confidence 998763
No 59
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=99.92 E-value=1.5e-23 Score=216.86 Aligned_cols=269 Identities=15% Similarity=0.149 Sum_probs=179.1
Q ss_pred ccCccccCCCCCCCCCCHHHHHHHHhCCCCCccHhhHHHHHHhhCCCCCCCCEEEECCCCCchHHHhHHHHHHHhhh-cc
Q 017196 20 DVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSN-RA 98 (375)
Q Consensus 20 ~~~~~~~~~~~~~~~l~~~i~~~l~~~g~~~~~~~Q~~~~~~~~~~~~~~~~~ii~a~TGsGKTl~~~l~il~~l~~-~~ 98 (375)
+..+|++++ +++.+.+.+...+ ..|++.|+.++..++. .+++++++||||||||+ ++|++..... ..
T Consensus 70 ~~~~f~~~~------l~~~~~~~l~~r~-~lP~~~q~~~i~~~l~---~~~~vii~gpTGSGKTt--llp~ll~~~~~~~ 137 (773)
T 2xau_A 70 KINPFTGRE------FTPKYVDILKIRR-ELPVHAQRDEFLKLYQ---NNQIMVFVGETGSGKTT--QIPQFVLFDEMPH 137 (773)
T ss_dssp SBCTTTCSB------CCHHHHHHHHHHT-TSGGGGGHHHHHHHHH---HCSEEEEECCTTSSHHH--HHHHHHHHHHCGG
T ss_pred CCCCccccC------CCHHHHHHHHHhh-cCChHHHHHHHHHHHh---CCCeEEEECCCCCCHHH--HHHHHHHHhcccc
Confidence 345677777 9999999998888 6899999999888775 67789999999999998 4555522211 11
Q ss_pred cCCceEEEEcccHHHHHHHHHHHHHhcc-ccCceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcCCCcEEE
Q 017196 99 VRCLRALVVLPTRDLALQVKDVFAAIAP-AVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILV 177 (375)
Q Consensus 99 ~~~~~~lil~Pt~~L~~Q~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiV 177 (375)
..+.++++++|+++|+.|+.+.+..... ..+..++.-.... .....+.+|++
T Consensus 138 ~~g~~ilvl~P~r~La~q~~~~l~~~~~~~v~~~vG~~i~~~---------------------------~~~~~~~~I~v 190 (773)
T 2xau_A 138 LENTQVACTQPRRVAAMSVAQRVAEEMDVKLGEEVGYSIRFE---------------------------NKTSNKTILKY 190 (773)
T ss_dssp GGTCEEEEEESCHHHHHHHHHHHHHHTTCCBTTTEEEEETTE---------------------------EECCTTCSEEE
T ss_pred CCCceEEecCchHHHHHHHHHHHHHHhCCchhheecceeccc---------------------------cccCCCCCEEE
Confidence 1245799999999999999887754332 2222222111000 01124579999
Q ss_pred eCcHHHHHHHhhcCCCCCCCccEEEEecchh-hhhHh-HHhHHHHHHHhhhccccccccccccccccccccccccccccc
Q 017196 178 ATPGRLMDHINATRGFTLEHLCYLVVDETDR-LLREA-YQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGV 255 (375)
Q Consensus 178 ~Tp~~l~~~l~~~~~~~~~~~~~vIiDE~h~-l~~~~-~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (375)
+||+++.+.+... ..+..+++||+||+|. .++.. ....+..+.... .
T Consensus 191 ~T~G~l~r~l~~~--~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~-~---------------------------- 239 (773)
T 2xau_A 191 MTDGMLLREAMED--HDLSRYSCIILDEAHERTLATDILMGLLKQVVKRR-P---------------------------- 239 (773)
T ss_dssp EEHHHHHHHHHHS--TTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHC-T----------------------------
T ss_pred ECHHHHHHHHhhC--ccccCCCEEEecCccccccchHHHHHHHHHHHHhC-C----------------------------
Confidence 9999999887762 4588999999999996 44533 223333333221 1
Q ss_pred ccCCCCCCCCceeEEEEEEecCCCchhhhccccCCCeEEecCCccccCcccceeEEEeccCCCcHHH----HHHHHHhcC
Q 017196 256 ERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLY----LVALLQSLG 331 (375)
Q Consensus 256 ~~~~~~~~~~~~q~i~~SATl~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~k~~~----l~~ll~~~~ 331 (375)
+.|+++||||++ ...+...+ .+...+.+.... ..+..++......+.... +.++.....
T Consensus 240 ----------~~~iIl~SAT~~--~~~l~~~~-~~~~vi~v~gr~----~pv~~~~~~~~~~~~~~~~l~~l~~~~~~~~ 302 (773)
T 2xau_A 240 ----------DLKIIIMSATLD--AEKFQRYF-NDAPLLAVPGRT----YPVELYYTPEFQRDYLDSAIRTVLQIHATEE 302 (773)
T ss_dssp ----------TCEEEEEESCSC--CHHHHHHT-TSCCEEECCCCC----CCEEEECCSSCCSCHHHHHHHHHHHHHHHSC
T ss_pred ----------CceEEEEecccc--HHHHHHHh-cCCCcccccCcc----cceEEEEecCCchhHHHHHHHHHHHHHHhcC
Confidence 468999999995 34444433 333334433322 234555544444443332 223333446
Q ss_pred CCeEEEEcCChhhHHHHHHHHHH--------hcCCcceEEeccccccccccC
Q 017196 332 EEKCIVFTSSVESTHRLCTLLNH--------FGELRIKIKEYSGLQRQSVRR 375 (375)
Q Consensus 332 ~~k~lIF~~s~~~a~~l~~~L~~--------~g~~~~~~~~lh~~~~~~~R~ 375 (375)
.+++||||+++++++.+++.|.. ....++.+..+||+|++++|+
T Consensus 303 ~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~ 354 (773)
T 2xau_A 303 AGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQ 354 (773)
T ss_dssp SCEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHG
T ss_pred CCCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHH
Confidence 78999999999999999999974 122568999999999998874
No 60
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=99.91 E-value=3.9e-24 Score=209.24 Aligned_cols=223 Identities=15% Similarity=0.182 Sum_probs=149.2
Q ss_pred CCCCccHhhHHHHHHhhCCCCCCCCE-EEECCCCCchHHHhHHHHHHHhhhcccCCceEEEEcccHHHHHHHHHHHHHhc
Q 017196 47 GISSLFPVQVAVWQETIGPGLFERDL-CINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIA 125 (375)
Q Consensus 47 g~~~~~~~Q~~~~~~~~~~~~~~~~~-ii~a~TGsGKTl~~~l~il~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~ 125 (375)
|+.+|+|+|. +++.++ .++++ ++++|||||||++|++|++..+... +.+++|++||++|+.|+++.+.
T Consensus 1 G~~q~~~iq~-~i~~~l----~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~---~~~~lvl~Ptr~La~Q~~~~l~--- 69 (451)
T 2jlq_A 1 GSAMGEPDYE-VDEDIF----RKKRLTIMDLHPGAGKTKRILPSIVREALLR---RLRTLILAPTRVVAAEMEEALR--- 69 (451)
T ss_dssp CCCCCSCCCC-CCGGGG----STTCEEEECCCTTSSCCTTHHHHHHHHHHHT---TCCEEEEESSHHHHHHHHHHTT---
T ss_pred CCCCCCCcHH-HHHHHH----hcCCeEEEECCCCCCHhhHHHHHHHHHHHhc---CCcEEEECCCHHHHHHHHHHhc---
Confidence 6788999985 555444 56666 9999999999999999999876553 3589999999999999999885
Q ss_pred cccCceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcCCCcEEEeCcHHHHHHHhhcCCCCCCCccEEEEec
Q 017196 126 PAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDE 205 (375)
Q Consensus 126 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiV~Tp~~l~~~l~~~~~~~~~~~~~vIiDE 205 (375)
+..+....+... .....+..|.++|++.+.+.+.+. ..+.++++||+||
T Consensus 70 ---g~~v~~~~~~~~--------------------------~~~~~~~~i~~~t~~~l~~~l~~~--~~l~~~~~iViDE 118 (451)
T 2jlq_A 70 ---GLPIRYQTPAVK--------------------------SDHTGREIVDLMCHATFTTRLLSS--TRVPNYNLIVMDE 118 (451)
T ss_dssp ---TSCEEECCTTCS--------------------------CCCCSSCCEEEEEHHHHHHHHHHC--SCCCCCSEEEEET
T ss_pred ---Cceeeeeecccc--------------------------ccCCCCceEEEEChHHHHHHhhCc--ccccCCCEEEEeC
Confidence 333322111110 011234579999999998888763 4578999999999
Q ss_pred chhhhhHhHHhHHHHHHHhhhcccccccccccccccccccccccccccccccCCCCCCCCceeEEEEEEecCCCchhhhc
Q 017196 206 TDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQ 285 (375)
Q Consensus 206 ~h~l~~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~~~~~~~ 285 (375)
||++ +..+...+..+...... ++.|+++||||++.....+.
T Consensus 119 ah~~-~~~~~~~~~~~~~~~~~-------------------------------------~~~~~i~~SAT~~~~~~~~~- 159 (451)
T 2jlq_A 119 AHFT-DPCSVAARGYISTRVEM-------------------------------------GEAAAIFMTATPPGSTDPFP- 159 (451)
T ss_dssp TTCC-SHHHHHHHHHHHHHHHT-------------------------------------TSCEEEEECSSCTTCCCSSC-
T ss_pred CccC-CcchHHHHHHHHHhhcC-------------------------------------CCceEEEEccCCCccchhhh-
Confidence 9977 44433333333222111 15689999999987554432
Q ss_pred cccCCCeEEecCCccccCcccceeEEEeccCCCcHHHHHHHHHhcCCCeEEEEcCChhhHHHHHHHHHHhcCCcceEEec
Q 017196 286 LDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEY 365 (375)
Q Consensus 286 ~~~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~k~lIF~~s~~~a~~l~~~L~~~g~~~~~~~~l 365 (375)
..++..+..... .+. ..+ ... ...+... .+++||||+++++|+.+++.|+.. ++.+..+
T Consensus 160 --~~~~~~~~~~~~---~p~--~~~------~~~----~~~l~~~-~~~~lVF~~s~~~a~~l~~~L~~~---g~~~~~l 218 (451)
T 2jlq_A 160 --QSNSPIEDIERE---IPE--RSW------NTG----FDWITDY-QGKTVWFVPSIKAGNDIANCLRKS---GKRVIQL 218 (451)
T ss_dssp --CCSSCEEEEECC---CCS--SCC------SSS----CHHHHHC-CSCEEEECSSHHHHHHHHHHHHTT---TCCEEEE
T ss_pred --cCCCceEecCcc---CCc--hhh------HHH----HHHHHhC-CCCEEEEcCCHHHHHHHHHHHHHc---CCeEEEC
Confidence 223333322211 110 000 011 2233333 458999999999999999999954 5899999
Q ss_pred cccccc
Q 017196 366 SGLQRQ 371 (375)
Q Consensus 366 h~~~~~ 371 (375)
||++..
T Consensus 219 h~~~~~ 224 (451)
T 2jlq_A 219 SRKTFD 224 (451)
T ss_dssp CTTTHH
T ss_pred CHHHHH
Confidence 998864
No 61
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=99.90 E-value=6.5e-24 Score=214.41 Aligned_cols=233 Identities=13% Similarity=0.083 Sum_probs=158.0
Q ss_pred CCHHHHHHHHhCCCCCccHhhHHHHHHhhCCCCCCCCEEEECCCCCchHHHhHHHHHHHhhhcccCCceEEEEcccHHHH
Q 017196 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLA 114 (375)
Q Consensus 35 l~~~i~~~l~~~g~~~~~~~Q~~~~~~~~~~~~~~~~~ii~a~TGsGKTl~~~l~il~~l~~~~~~~~~~lil~Pt~~L~ 114 (375)
+++.+.+++... ...++|+|+.+ ++.+.+|+|+++++|||||||++|++|+++.+... +.++||++||++||
T Consensus 157 ~~~~~~~~l~~~-~~~~lpiq~~~----i~~l~~g~dvlv~a~TGSGKT~~~~lpil~~l~~~---~~~vLvl~PtreLa 228 (618)
T 2whx_A 157 KSGDYVSAITQA-ERIGEPDYEVD----EDIFRKKRLTIMDLHPGAGKTKRILPSIVREALKR---RLRTLILAPTRVVA 228 (618)
T ss_dssp -----CEECBCC-CCCCCCCCCCC----GGGGSTTCEEEECCCTTSSTTTTHHHHHHHHHHHT---TCCEEEEESSHHHH
T ss_pred chHHHHHHHhhc-cccCCCccccC----HHHHhcCCeEEEEcCCCCCHHHHHHHHHHHHHHhC---CCeEEEEcChHHHH
Confidence 444444444432 37889998775 55556899999999999999999999999988653 35899999999999
Q ss_pred HHHHHHHHHhccccCceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcCCCcEEEeCcHHHHHHHhhcCCCC
Q 017196 115 LQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFT 194 (375)
Q Consensus 115 ~Q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiV~Tp~~l~~~l~~~~~~~ 194 (375)
.|+++.++. ..+. +.+.... .....+..+.+.|.+.+...+... ..
T Consensus 229 ~Qi~~~l~~------~~v~-~~~~~l~-------------------------~~~tp~~~i~~~t~~~l~~~l~~~--~~ 274 (618)
T 2whx_A 229 AEMEEALRG------LPIR-YQTPAVK-------------------------SDHTGREIVDLMCHATFTTRLLSS--TR 274 (618)
T ss_dssp HHHHHHTTT------SCEE-ECCTTSS-------------------------CCCCSSSCEEEEEHHHHHHHHHHC--SS
T ss_pred HHHHHHhcC------Ccee-Eecccce-------------------------eccCCCceEEEEChHHHHHHHhcc--cc
Confidence 999988863 3333 1111100 011223467778888887766653 45
Q ss_pred CCCccEEEEecchhhhhHhHHhHHHHHHHhhhcccccccccccccccccccccccccccccccCCCCCCCCceeEEEEEE
Q 017196 195 LEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSA 274 (375)
Q Consensus 195 ~~~~~~vIiDE~h~l~~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SA 274 (375)
++++++||+||||++ +.++...+..+...++.. +.|+++|||
T Consensus 275 l~~~~~iViDEah~~-~~~~~~~~~~i~~~l~~~-------------------------------------~~q~il~SA 316 (618)
T 2whx_A 275 VPNYNLIVMDEAHFT-DPCSVAARGYISTRVEMG-------------------------------------EAAAIFMTA 316 (618)
T ss_dssp CCCCSEEEEESTTCC-SHHHHHHHHHHHHHHHHT-------------------------------------SCEEEEECS
T ss_pred ccCCeEEEEECCCCC-CccHHHHHHHHHHHhccc-------------------------------------CccEEEEEC
Confidence 789999999999998 667777777777776431 568999999
Q ss_pred ecCCCchhhhccccCCCeEEecCCccccCcccceeEEEeccCCCcHHHHHHHHHhcCCCeEEEEcCChhhHHHHHHHHHH
Q 017196 275 TLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNH 354 (375)
Q Consensus 275 Tl~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~k~lIF~~s~~~a~~l~~~L~~ 354 (375)
|++.....+.. .++..+.+.... +.... ..+...+.. ..+++||||+|+++|+.+++.|+.
T Consensus 317 T~~~~~~~~~~---~~~~~~~v~~~~--------------~~~~~-~~ll~~l~~-~~~~~LVF~~s~~~a~~l~~~L~~ 377 (618)
T 2whx_A 317 TPPGSTDPFPQ---SNSPIEDIEREI--------------PERSW-NTGFDWITD-YQGKTVWFVPSIKAGNDIANCLRK 377 (618)
T ss_dssp SCTTCCCSSCC---CSSCEEEEECCC--------------CSSCC-SSSCHHHHH-CCSCEEEECSSHHHHHHHHHHHHH
T ss_pred CCchhhhhhhc---cCCceeeecccC--------------CHHHH-HHHHHHHHh-CCCCEEEEECChhHHHHHHHHHHH
Confidence 99887665443 223332222110 00111 112222333 256899999999999999999996
Q ss_pred hcCCcceEEeccccc
Q 017196 355 FGELRIKIKEYSGLQ 369 (375)
Q Consensus 355 ~g~~~~~~~~lh~~~ 369 (375)
.+ +.+..+||+.
T Consensus 378 ~g---~~v~~lhg~~ 389 (618)
T 2whx_A 378 SG---KRVIQLSRKT 389 (618)
T ss_dssp TT---CCEEEECTTT
T ss_pred cC---CcEEEEChHH
Confidence 54 8999999963
No 62
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=99.90 E-value=9.9e-24 Score=185.49 Aligned_cols=142 Identities=21% Similarity=0.234 Sum_probs=103.9
Q ss_pred CCCCCccHhhHHHHHHhhCCCCCCCCEEEECCCCCchHHHhHHHHHHHhhhcc--cCCceEEEEcccHHHHHH-HHHHHH
Q 017196 46 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRA--VRCLRALVVLPTRDLALQ-VKDVFA 122 (375)
Q Consensus 46 ~g~~~~~~~Q~~~~~~~~~~~~~~~~~ii~a~TGsGKTl~~~l~il~~l~~~~--~~~~~~lil~Pt~~L~~Q-~~~~~~ 122 (375)
.+..+|+++|.++++.++ .++++++.+|||+|||++|+++++..+.... ..+.++||++|+++|+.| +.+.++
T Consensus 29 ~~~~~l~~~Q~~~i~~~~----~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~ 104 (216)
T 3b6e_A 29 EPELQLRPYQMEVAQPAL----EGKNIIICLPTGSGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQ 104 (216)
T ss_dssp SCCCCCCHHHHHHHHHHH----TTCCEEEECSCHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEEESSHHHHHHHHHHTHH
T ss_pred cCCCCchHHHHHHHHHHh----cCCCEEEEcCCCCCHHHHHHHHHHHHHhhcccccCCCcEEEEECHHHHHHHHHHHHHH
Confidence 345589999999999887 4789999999999999999999988776532 234589999999999999 778888
Q ss_pred HhccccCceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcCCCcEEEeCcHHHHHHHhhcCC-----CCCCC
Q 017196 123 AIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRG-----FTLEH 197 (375)
Q Consensus 123 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiV~Tp~~l~~~l~~~~~-----~~~~~ 197 (375)
.+... ++++..+.|+...... ...+..+++|+|+||+.+...+..... ..+..
T Consensus 105 ~~~~~-~~~v~~~~g~~~~~~~---------------------~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~~~ 162 (216)
T 3b6e_A 105 PFLKK-WYRVIGLSGDTQLKIS---------------------FPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSD 162 (216)
T ss_dssp HHHTT-TSCEEECCC---CCCC---------------------HHHHHHHCSEEEEEHHHHHHHHHC-------CCCGGG
T ss_pred HHhcc-CceEEEEeCCcccchh---------------------HHhhccCCCEEEECHHHHHHHHhccCcccccccchhc
Confidence 87664 6788888887543221 112223579999999999998877432 55788
Q ss_pred ccEEEEecchhhhhHh
Q 017196 198 LCYLVVDETDRLLREA 213 (375)
Q Consensus 198 ~~~vIiDE~h~l~~~~ 213 (375)
+++||+||||++.+.+
T Consensus 163 ~~~iIiDEah~~~~~~ 178 (216)
T 3b6e_A 163 FSLIIIDECHHTNKEA 178 (216)
T ss_dssp CSEEEETTC-------
T ss_pred ccEEEEECchhhccCC
Confidence 9999999999997764
No 63
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=99.90 E-value=3.2e-24 Score=209.10 Aligned_cols=200 Identities=15% Similarity=0.111 Sum_probs=130.8
Q ss_pred CCCCCCCEEEECCCCCchHHHhHHHHHHHhhhcccCCceEEEEcccHHHHHHHHHHHHHhccccCceEEEeecCCchHHH
Q 017196 65 PGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADE 144 (375)
Q Consensus 65 ~~~~~~~~ii~a~TGsGKTl~~~l~il~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 144 (375)
.+.+|+|+++++|||||||++|++|++..+... +++++|++||++||.|+++.++.+ .+....+..
T Consensus 4 ~l~~g~~vlv~a~TGSGKT~~~l~~~l~~~~~~---~~~~lil~Ptr~La~Q~~~~l~~~------~v~~~~~~~----- 69 (440)
T 1yks_A 4 MLKKGMTTVLDFHPGAGKTRRFLPQILAECARR---RLRTLVLAPTRVVLSEMKEAFHGL------DVKFHTQAF----- 69 (440)
T ss_dssp TTSTTCEEEECCCTTSSTTTTHHHHHHHHHHHT---TCCEEEEESSHHHHHHHHHHTTTS------CEEEESSCC-----
T ss_pred HhhCCCCEEEEcCCCCCHHHHHHHHHHHHHHhc---CCeEEEEcchHHHHHHHHHHHhcC------CeEEecccc-----
Confidence 345899999999999999999999999877654 358999999999999999998744 222111110
Q ss_pred HHHHhhcCccccCccCCchhHHHhhcCCCcEEEeCcHHHHHHHhh-------cCCCCCCCccEEEEecchhhhhHhHHhH
Q 017196 145 ISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINA-------TRGFTLEHLCYLVVDETDRLLREAYQAW 217 (375)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiV~Tp~~l~~~l~~-------~~~~~~~~~~~vIiDE~h~l~~~~~~~~ 217 (375)
-.|+||+++.+++.+ .....++++++||+||+|++ +..+...
T Consensus 70 ------------------------------~~v~Tp~~l~~~l~~~~l~~~~~~~~~~~~l~~vViDEah~~-~~~~~~~ 118 (440)
T 1yks_A 70 ------------------------------SAHGSGREVIDAMCHATLTYRMLEPTRVVNWEVIIMDEAHFL-DPASIAA 118 (440)
T ss_dssp ------------------------------CCCCCSSCCEEEEEHHHHHHHHTSSSCCCCCSEEEETTTTCC-SHHHHHH
T ss_pred ------------------------------eeccCCccceeeecccchhHhhhCcccccCccEEEEECcccc-CcchHHH
Confidence 025566544322211 01234789999999999998 4444444
Q ss_pred HHHHHHhhhcccccccccccccccccccccccccccccccCCCCCCCCceeEEEEEEecCCCchhhhccccCCCeEEecC
Q 017196 218 LPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTG 297 (375)
Q Consensus 218 l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~~~~~~~~~~~~~~~i~~~ 297 (375)
+..+...... .+.|+++||||++.....+.... .+...
T Consensus 119 ~~~~~~~~~~-------------------------------------~~~~~l~~SAT~~~~~~~~~~~~--~~~~~--- 156 (440)
T 1yks_A 119 RGWAAHRARA-------------------------------------NESATILMTATPPGTSDEFPHSN--GEIED--- 156 (440)
T ss_dssp HHHHHHHHHT-------------------------------------TSCEEEEECSSCTTCCCSSCCCS--SCEEE---
T ss_pred HHHHHHHhcc-------------------------------------CCceEEEEeCCCCchhhhhhhcC--CCeeE---
Confidence 4444443321 15689999999988766554321 11111
Q ss_pred CccccCcccceeEEEeccCCCcHHHHHHHHHhcCCCeEEEEcCChhhHHHHHHHHHHhcCCcceEEecccc
Q 017196 298 ETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGL 368 (375)
Q Consensus 298 ~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~k~lIF~~s~~~a~~l~~~L~~~g~~~~~~~~lh~~ 368 (375)
....++...+...+ ..+.. .++++||||+++++|+.+++.|+.. ++.+..+||+
T Consensus 157 ------------~~~~~~~~~~~~~~-~~l~~-~~~~~lVF~~s~~~a~~l~~~L~~~---~~~v~~lhg~ 210 (440)
T 1yks_A 157 ------------VQTDIPSEPWNTGH-DWILA-DKRPTAWFLPSIRAANVMAASLRKA---GKSVVVLNRK 210 (440)
T ss_dssp ------------EECCCCSSCCSSSC-HHHHH-CCSCEEEECSCHHHHHHHHHHHHHT---TCCEEECCSS
T ss_pred ------------eeeccChHHHHHHH-HHHHh-cCCCEEEEeCCHHHHHHHHHHHHHc---CCCEEEecch
Confidence 00011111111112 22222 2568999999999999999999965 4899999994
No 64
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=99.89 E-value=2.3e-23 Score=210.63 Aligned_cols=143 Identities=17% Similarity=0.119 Sum_probs=81.7
Q ss_pred CCccHhhHHHHHHhhCCCCCC-CCEEEECCCCCchHHHhHHHHHHHhhhcc------cCCceEEEEcccHHHHHHHH-HH
Q 017196 49 SSLFPVQVAVWQETIGPGLFE-RDLCINSPTGSGKTLSYALPIVQTLSNRA------VRCLRALVVLPTRDLALQVK-DV 120 (375)
Q Consensus 49 ~~~~~~Q~~~~~~~~~~~~~~-~~~ii~a~TGsGKTl~~~l~il~~l~~~~------~~~~~~lil~Pt~~L~~Q~~-~~ 120 (375)
..|+++|.+|++.++..+..+ ++++++++||+|||++++. ++..+.... ....++|||+||++|+.|++ +.
T Consensus 177 ~~lr~~Q~~ai~~~~~~~~~~~~~~ll~~~TGsGKT~~~~~-~~~~l~~~~~~~~~~~~~~~vlil~P~~~L~~Q~~~~~ 255 (590)
T 3h1t_A 177 YSPRYYQQIAINRAVQSVLQGKKRSLITMATGTGKTVVAFQ-ISWKLWSARWNRTGDYRKPRILFLADRNVLVDDPKDKT 255 (590)
T ss_dssp --CCHHHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHH-HHHHHHHTTCCSSCSSSCCCEEEEEC-----------C
T ss_pred CCchHHHHHHHHHHHHHHhcCCCceEEEecCCCChHHHHHH-HHHHHHhcccccccccCCCeEEEEeCCHHHHHHHHHHH
Confidence 379999999999887544445 5689999999999999654 444443321 14568999999999999999 77
Q ss_pred HHHhccccCceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcCCCcEEEeCcHHHHHHHhh---cCCCCCCC
Q 017196 121 FAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINA---TRGFTLEH 197 (375)
Q Consensus 121 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiV~Tp~~l~~~l~~---~~~~~~~~ 197 (375)
++.+. ..+..+.++ ....+.+|+|+||++|...... ...+....
T Consensus 256 ~~~~~----~~~~~~~~~-----------------------------~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~ 302 (590)
T 3h1t_A 256 FTPFG----DARHKIEGG-----------------------------KVVKSREIYFAIYQSIASDERRPGLYKEFPQDF 302 (590)
T ss_dssp CTTTC----SSEEECCC-------------------------------CCSSCSEEEEEGGGC------CCGGGGSCTTS
T ss_pred HHhcc----hhhhhhhcc-----------------------------CCCCCCcEEEEEhhhhccccccccccccCCCCc
Confidence 77653 334444332 2245679999999999887642 12355678
Q ss_pred ccEEEEecchhhhhHhHHhHHHHHHHhhh
Q 017196 198 LCYLVVDETDRLLREAYQAWLPTVLQLTR 226 (375)
Q Consensus 198 ~~~vIiDE~h~l~~~~~~~~l~~i~~~l~ 226 (375)
+++||+||||++..... ..+..++..++
T Consensus 303 ~~lvIiDEaH~~~~~~~-~~~~~il~~~~ 330 (590)
T 3h1t_A 303 FDLIIIDECHRGSARDN-SNWREILEYFE 330 (590)
T ss_dssp CSEEEESCCC----------CHHHHHHST
T ss_pred cCEEEEECCccccccch-HHHHHHHHhCC
Confidence 99999999999976432 23455555554
No 65
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=99.89 E-value=4e-23 Score=210.07 Aligned_cols=229 Identities=14% Similarity=0.129 Sum_probs=142.7
Q ss_pred HHhCCCC-----CccHhhH-----HHHHHhh--CCCCCCCCEEEECCCCCchHHHhHHHHHHHhhhcccCCceEEEEccc
Q 017196 43 LQNMGIS-----SLFPVQV-----AVWQETI--GPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPT 110 (375)
Q Consensus 43 l~~~g~~-----~~~~~Q~-----~~~~~~~--~~~~~~~~~ii~a~TGsGKTl~~~l~il~~l~~~~~~~~~~lil~Pt 110 (375)
+...||. .|+++|+ .+++.++ ..+..++|+++++|||||||++|++|++..+... +.+++|++||
T Consensus 203 l~~~Gf~~~~~~~pt~IQ~~~r~~~aIp~~l~~~~l~~g~dvlv~apTGSGKTl~~ll~il~~l~~~---~~~~lilaPT 279 (673)
T 2wv9_A 203 LYGNGVILGNGAYVSAIVQGERVEEPVPEAYNPEMLKKRQLTVLDLHPGAGKTRRILPQIIKDAIQK---RLRTAVLAPT 279 (673)
T ss_dssp EEEEEEECSSSCEEEEEECC-------CCCCCGGGGSTTCEEEECCCTTTTTTTTHHHHHHHHHHHT---TCCEEEEESS
T ss_pred eeeccccccCCCccCceeeccccccchHHHhhHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHhC---CCcEEEEccH
Confidence 4445666 8999999 7644333 1112799999999999999999999999887653 3589999999
Q ss_pred HHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcCCCcEEEeCcHHHHHHHhhc
Q 017196 111 RDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINAT 190 (375)
Q Consensus 111 ~~L~~Q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiV~Tp~~l~~~l~~~ 190 (375)
++||.|+++.++.+. +. ...+... .....+.-+-+.+.+.+...+..
T Consensus 280 r~La~Q~~~~l~~~~----i~--~~~~~l~--------------------------~v~tp~~ll~~l~~~~l~~~l~~- 326 (673)
T 2wv9_A 280 RVVAAEMAEALRGLP----VR--YLTPAVQ--------------------------REHSGNEIVDVMCHATLTHRLMS- 326 (673)
T ss_dssp HHHHHHHHHHTTTSC----CE--ECCC-----------------------------CCCCSCCCEEEEEHHHHHHHHHS-
T ss_pred HHHHHHHHHHHhcCC----ee--eeccccc--------------------------ccCCHHHHHHHHHhhhhHHHHhc-
Confidence 999999999887542 21 1111000 00011122333444444444443
Q ss_pred CCCCCCCccEEEEecchhhhhHhHHhHHHHHHHhhhcccccccccccccccccccccccccccccccCCCCCCCCceeEE
Q 017196 191 RGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKM 270 (375)
Q Consensus 191 ~~~~~~~~~~vIiDE~h~l~~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i 270 (375)
...++++++||+||+|++ +..+...+..+...++. .+.|++
T Consensus 327 -~~~l~~l~lvViDEaH~~-~~~~~~~~~~l~~~~~~-------------------------------------~~~~vl 367 (673)
T 2wv9_A 327 -PLRVPNYNLFVMDEAHFT-DPASIAARGYIATRVEA-------------------------------------GEAAAI 367 (673)
T ss_dssp -SSCCCCCSEEEEESTTCC-CHHHHHHHHHHHHHHHT-------------------------------------TSCEEE
T ss_pred -ccccccceEEEEeCCccc-CccHHHHHHHHHHhccc-------------------------------------cCCcEE
Confidence 246789999999999998 33333333444444321 156899
Q ss_pred EEEEecCCCchhhhccccCCCeEEecCCccccCcccceeEEEeccCCCcHHHHHHHHHhcCCCeEEEEcCChhhHHHHHH
Q 017196 271 VLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCT 350 (375)
Q Consensus 271 ~~SATl~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~k~lIF~~s~~~a~~l~~ 350 (375)
+||||++..+..+.... .+...... ..+.......+ ..+.. ..+++||||+++++|+.+++
T Consensus 368 ~~SAT~~~~i~~~~~~~--~~i~~v~~---------------~~~~~~~~~~l-~~l~~-~~~~~lVF~~s~~~~e~la~ 428 (673)
T 2wv9_A 368 FMTATPPGTSDPFPDTN--SPVHDVSS---------------EIPDRAWSSGF-EWITD-YAGKTVWFVASVKMSNEIAQ 428 (673)
T ss_dssp EECSSCTTCCCSSCCCS--SCEEEEEC---------------CCCSSCCSSCC-HHHHS-CCSCEEEECSSHHHHHHHHH
T ss_pred EEcCCCChhhhhhcccC--CceEEEee---------------ecCHHHHHHHH-HHHHh-CCCCEEEEECCHHHHHHHHH
Confidence 99999988766554321 12111100 01111111112 22222 46699999999999999999
Q ss_pred HHHHhcCCcceEEecccc
Q 017196 351 LLNHFGELRIKIKEYSGL 368 (375)
Q Consensus 351 ~L~~~g~~~~~~~~lh~~ 368 (375)
.|+.. ++.+..+||+
T Consensus 429 ~L~~~---g~~v~~lHg~ 443 (673)
T 2wv9_A 429 CLQRA---GKRVIQLNRK 443 (673)
T ss_dssp HHHTT---TCCEEEECSS
T ss_pred HHHhC---CCeEEEeChH
Confidence 99954 5899999995
No 66
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=99.88 E-value=2.8e-22 Score=194.94 Aligned_cols=206 Identities=13% Similarity=0.102 Sum_probs=136.1
Q ss_pred CCCCEEEECCCCCchHHHhHHHHHHHhhhcccCCceEEEEcccHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHH
Q 017196 68 FERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISE 147 (375)
Q Consensus 68 ~~~~~ii~a~TGsGKTl~~~l~il~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 147 (375)
+|+++++++|||||||++|++++++.+... +.+++|++||++|++|+++.++ ++.+....|+...
T Consensus 1 kg~~~lv~a~TGsGKT~~~l~~~l~~~~~~---g~~~lvl~Pt~~La~Q~~~~~~------~~~v~~~~~~~~~------ 65 (431)
T 2v6i_A 1 KRELTVLDLHPGAGKTRRVLPQLVREAVKK---RLRTVILAPTRVVASEMYEALR------GEPIRYMTPAVQS------ 65 (431)
T ss_dssp -CCEEEEECCTTSCTTTTHHHHHHHHHHHT---TCCEEEEESSHHHHHHHHHHTT------TSCEEEC------------
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHhC---CCCEEEECcHHHHHHHHHHHhC------CCeEEEEecCccc------
Confidence 378999999999999999999999766543 3489999999999999998776 4555544443210
Q ss_pred HhhcCccccCccCCchhHHHhhcCCCcEEEeCcHHHHHHHhhcCCCCCCCccEEEEecchhhhhHhHHhHHHHHHHhhhc
Q 017196 148 LIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRS 227 (375)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~IiV~Tp~~l~~~l~~~~~~~~~~~~~vIiDE~h~l~~~~~~~~l~~i~~~l~~ 227 (375)
....+..+.+.|.+.+...+.. ...+.++++||+||+|++ ...+......+......
T Consensus 66 --------------------~~~~~~~~~~~~~~~l~~~l~~--~~~~~~l~~vViDEaH~~-~~~~~~~~~~l~~~~~~ 122 (431)
T 2v6i_A 66 --------------------ERTGNEIVDFMCHSTFTMKLLQ--GVRVPNYNLYIMDEAHFL-DPASVAARGYIETRVSM 122 (431)
T ss_dssp -----------------------CCCSEEEEEHHHHHHHHHH--TCCCCCCSEEEEESTTCC-SHHHHHHHHHHHHHHHT
T ss_pred --------------------cCCCCceEEEEchHHHHHHHhc--CccccCCCEEEEeCCccC-CccHHHHHHHHHHHhhC
Confidence 1112345677788888766665 356789999999999998 44444444444444311
Q ss_pred ccccccccccccccccccccccccccccccCCCCCCCCceeEEEEEEecCCCchhhhccccCCCeEEecCCccccCcccc
Q 017196 228 DNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERL 307 (375)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~i 307 (375)
.+.|+++||||++..+..+... ..+.. ....
T Consensus 123 -------------------------------------~~~~~l~~SAT~~~~~~~~~~~--~~~i~-~~~~--------- 153 (431)
T 2v6i_A 123 -------------------------------------GDAGAIFMTATPPGTTEAFPPS--NSPII-DEET--------- 153 (431)
T ss_dssp -------------------------------------TSCEEEEEESSCTTCCCSSCCC--SSCCE-EEEC---------
T ss_pred -------------------------------------CCCcEEEEeCCCCcchhhhcCC--CCcee-eccc---------
Confidence 1568999999999765544322 11111 1100
Q ss_pred eeEEEeccCCCcHHHHHHHHHhcCCCeEEEEcCChhhHHHHHHHHHHhcCCcceEEecccccc
Q 017196 308 ESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQR 370 (375)
Q Consensus 308 ~~~~~~~~~~~k~~~l~~ll~~~~~~k~lIF~~s~~~a~~l~~~L~~~g~~~~~~~~lh~~~~ 370 (375)
..+. .+...+.+.+... .+++||||+++++|+.+++.|+.. ++.+..+||++.
T Consensus 154 -----~~~~-~~~~~~~~~l~~~-~~~~lVF~~~~~~~~~l~~~L~~~---~~~v~~lhg~~r 206 (431)
T 2v6i_A 154 -----RIPD-KAWNSGYEWITEF-DGRTVWFVHSIKQGAEIGTCLQKA---GKKVLYLNRKTF 206 (431)
T ss_dssp -----CCCS-SCCSSCCHHHHSC-SSCEEEECSSHHHHHHHHHHHHHT---TCCEEEESTTTH
T ss_pred -----cCCH-HHHHHHHHHHHcC-CCCEEEEeCCHHHHHHHHHHHHHc---CCeEEEeCCccH
Confidence 0011 1111223344443 558999999999999999999965 489999999854
No 67
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=99.88 E-value=4.8e-22 Score=194.82 Aligned_cols=206 Identities=18% Similarity=0.181 Sum_probs=132.5
Q ss_pred CCCCCCEEEECCCCCchHHHhHHHHHHHhhhcccCCceEEEEcccHHHHHHHHHHHHHhccccCceEEEeecCCchHHHH
Q 017196 66 GLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEI 145 (375)
Q Consensus 66 ~~~~~~~ii~a~TGsGKTl~~~l~il~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 145 (375)
+.+++++++++|||||||++|++|++..+... +.++||++||++|+.|+++.++. ..+....+....
T Consensus 18 l~~~~~vlv~a~TGsGKT~~~~l~il~~~~~~---~~~~lvl~Ptr~La~Q~~~~l~g------~~v~~~~~~~~~---- 84 (459)
T 2z83_A 18 LRKRQMTVLDLHPGSGKTRKILPQIIKDAIQQ---RLRTAVLAPTRVVAAEMAEALRG------LPVRYQTSAVQR---- 84 (459)
T ss_dssp GSTTCEEEECCCTTSCTTTTHHHHHHHHHHHT---TCCEEEEECSHHHHHHHHHHTTT------SCEEECC---------
T ss_pred HhcCCcEEEECCCCCCHHHHHHHHHHHHHHhC---CCcEEEECchHHHHHHHHHHhcC------ceEeEEeccccc----
Confidence 34789999999999999999999999887643 35799999999999999998873 333222221100
Q ss_pred HHHhhcCccccCccCCchhHHHhhcCCCcEEEeCcHHHHHHHhhcCCCCCCCccEEEEecchhhhhHhHHhHHHHHHHhh
Q 017196 146 SELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLT 225 (375)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiV~Tp~~l~~~l~~~~~~~~~~~~~vIiDE~h~l~~~~~~~~l~~i~~~l 225 (375)
....+..+.+.|.+.+...+... ..++++++|||||||++ +..+...+..+....
T Consensus 85 ----------------------~~t~~~~i~~~~~~~l~~~l~~~--~~l~~~~~iViDEaH~~-~~~~~~~~~~~~~~~ 139 (459)
T 2z83_A 85 ----------------------EHQGNEIVDVMCHATLTHRLMSP--NRVPNYNLFVMDEAHFT-DPASIAARGYIATKV 139 (459)
T ss_dssp -------------------------CCCSEEEEEHHHHHHHHHSC--C-CCCCSEEEESSTTCC-SHHHHHHHHHHHHHH
T ss_pred ----------------------CCCCCcEEEEEchHHHHHHhhcc--ccccCCcEEEEECCccC-CchhhHHHHHHHHHh
Confidence 01123457778888877766552 56789999999999984 111111111121111
Q ss_pred hcccccccccccccccccccccccccccccccCCCCCCCCceeEEEEEEecCCCchhhhccccCCCeEEecCCccccCcc
Q 017196 226 RSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPE 305 (375)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 305 (375)
.. ++.|+++||||++..+..+... ..+....... .+.
T Consensus 140 ~~-------------------------------------~~~~~il~SAT~~~~~~~~~~~--~~pi~~~~~~----~~~ 176 (459)
T 2z83_A 140 EL-------------------------------------GEAAAIFMTATPPGTTDPFPDS--NAPIHDLQDE----IPD 176 (459)
T ss_dssp HT-------------------------------------TSCEEEEECSSCTTCCCSSCCC--SSCEEEEECC----CCS
T ss_pred cc-------------------------------------CCccEEEEEcCCCcchhhhccC--CCCeEEeccc----CCc
Confidence 11 1568999999999776554432 2333221110 000
Q ss_pred cceeEEEeccCCCcHHHHHHHHHhcCCCeEEEEcCChhhHHHHHHHHHHhcCCcceEEecccc
Q 017196 306 RLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGL 368 (375)
Q Consensus 306 ~i~~~~~~~~~~~k~~~l~~ll~~~~~~k~lIF~~s~~~a~~l~~~L~~~g~~~~~~~~lh~~ 368 (375)
. ..... ...+... .+++||||+++++|+.+++.|+..| +.+..+||+
T Consensus 177 ~--------~~~~~----~~~l~~~-~~~~LVF~~s~~~~~~l~~~L~~~g---~~v~~lh~~ 223 (459)
T 2z83_A 177 R--------AWSSG----YEWITEY-AGKTVWFVASVKMGNEIAMCLQRAG---KKVIQLNRK 223 (459)
T ss_dssp S--------CCSSC----CHHHHHC-CSCEEEECSCHHHHHHHHHHHHHTT---CCEEEESTT
T ss_pred c--------hhHHH----HHHHHhc-CCCEEEEeCChHHHHHHHHHHHhcC---CcEEecCHH
Confidence 0 00111 2233333 5689999999999999999999654 899999996
No 68
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=99.86 E-value=8.7e-21 Score=169.50 Aligned_cols=169 Identities=20% Similarity=0.230 Sum_probs=120.4
Q ss_pred CCCccHhhHHHHHHhhCCCCCCCCEEEECCCCCchHHHhHHHHHHHhhhcc-cCCceEEEEcccHHHHHHHHHHHHHhcc
Q 017196 48 ISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRA-VRCLRALVVLPTRDLALQVKDVFAAIAP 126 (375)
Q Consensus 48 ~~~~~~~Q~~~~~~~~~~~~~~~~~ii~a~TGsGKTl~~~l~il~~l~~~~-~~~~~~lil~Pt~~L~~Q~~~~~~~~~~ 126 (375)
...++++|.++++.+. .|+++++.||||||||.++.+++++...... ....+++++.|+++++.|+.+.+.....
T Consensus 59 ~~p~~~~q~~~i~~i~----~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~~~~~~~l~~~p~~~la~q~~~~~~~~~~ 134 (235)
T 3llm_A 59 LLPVKKFESEILEAIS----QNSVVIIRGATGCGKTTQVPQFILDDFIQNDRAAECNIVVTQPRRISAVSVAERVAFERG 134 (235)
T ss_dssp TSGGGGGHHHHHHHHH----HCSEEEEECCTTSSHHHHHHHHHHHHHHHTTCGGGCEEEEEESSHHHHHHHHHHHHHTTT
T ss_pred cCChHHHHHHHHHHHh----cCCEEEEEeCCCCCcHHhHHHHHhcchhhcCCCCceEEEEeccchHHHHHHHHHHHHHhc
Confidence 3468999999988876 6899999999999999998888888665432 2345899999999999999888875443
Q ss_pred -ccCceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcCCCcEEEeCcHHHHHHHhhcCCCCCCCccEEEEec
Q 017196 127 -AVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDE 205 (375)
Q Consensus 127 -~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiV~Tp~~l~~~l~~~~~~~~~~~~~vIiDE 205 (375)
..+..+..-..... .....+++|+|+||+++.+.+.. .++++++||+||
T Consensus 135 ~~~~~~~g~~~~~~~--------------------------~~~~~~~~Ivv~Tpg~l~~~l~~----~l~~~~~lVlDE 184 (235)
T 3llm_A 135 EEPGKSCGYSVRFES--------------------------ILPRPHASIMFCTVGVLLRKLEA----GIRGISHVIVDE 184 (235)
T ss_dssp CCTTSSEEEEETTEE--------------------------ECCCSSSEEEEEEHHHHHHHHHH----CCTTCCEEEECC
T ss_pred cccCceEEEeechhh--------------------------ccCCCCCeEEEECHHHHHHHHHh----hhcCCcEEEEEC
Confidence 22333332111110 01124578999999999999876 378999999999
Q ss_pred chhh-hhHhHH-hHHHHHHHhhhcccccccccccccccccccccccccccccccCCCCCCCCceeEEEEEEecCCCchhh
Q 017196 206 TDRL-LREAYQ-AWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKL 283 (375)
Q Consensus 206 ~h~l-~~~~~~-~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~~~~~ 283 (375)
||.+ ++.++. ..+..+....+ +.|+++||||++... +
T Consensus 185 ah~~~~~~~~~~~~l~~i~~~~~---------------------------------------~~~~il~SAT~~~~~--~ 223 (235)
T 3llm_A 185 IHERDINTDFLLVVLRDVVQAYP---------------------------------------EVRIVLMSATIDTSM--F 223 (235)
T ss_dssp TTSCCHHHHHHHHHHHHHHHHCT---------------------------------------TSEEEEEECSSCCHH--H
T ss_pred CccCCcchHHHHHHHHHHHhhCC---------------------------------------CCeEEEEecCCCHHH--H
Confidence 9986 566654 34454444321 468999999998643 5
Q ss_pred hccccCCC
Q 017196 284 AQLDLHHP 291 (375)
Q Consensus 284 ~~~~~~~~ 291 (375)
.+.+...|
T Consensus 224 ~~~~~~~p 231 (235)
T 3llm_A 224 CEYFFNCP 231 (235)
T ss_dssp HHHTTSCC
T ss_pred HHHcCCCC
Confidence 44444444
No 69
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=99.85 E-value=2.7e-21 Score=177.51 Aligned_cols=156 Identities=19% Similarity=0.185 Sum_probs=118.3
Q ss_pred CccHhhHHHHHHhhCCCCCCCCEEEECCCCCchHHHhHHHHHHHhhhcccCCceEEEEcccHHHHHHHHHHHHHhccccC
Q 017196 50 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVG 129 (375)
Q Consensus 50 ~~~~~Q~~~~~~~~~~~~~~~~~ii~a~TGsGKTl~~~l~il~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~ 129 (375)
+|+++|.++++.++. +.+.++++|||+|||++++.++...+... ..++||++||++|++|+.+.++++....+
T Consensus 113 ~l~~~Q~~ai~~~l~----~~~~ll~~~tGsGKT~~~~~~~~~~~~~~---~~~~lil~Pt~~L~~q~~~~l~~~~~~~~ 185 (282)
T 1rif_A 113 EPHWYQKDAVFEGLV----NRRRILNLPTSAGRSLIQALLARYYLENY---EGKILIIVPTTALTTQMADDFVDYRLFSH 185 (282)
T ss_dssp CCCHHHHHHHHHHHH----HSEEEECCCTTSCHHHHHHHHHHHHHHHC---SSEEEEECSSHHHHHHHHHHHHHHTSCCG
T ss_pred CccHHHHHHHHHHHh----cCCeEEEcCCCCCcHHHHHHHHHHHHHcC---CCeEEEEECCHHHHHHHHHHHHHhccccc
Confidence 899999999998874 56789999999999999988877766543 23799999999999999999999877666
Q ss_pred ceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcCCCcEEEeCcHHHHHHHhhcCCCCCCCccEEEEecchhh
Q 017196 130 LSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRL 209 (375)
Q Consensus 130 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiV~Tp~~l~~~l~~~~~~~~~~~~~vIiDE~h~l 209 (375)
..+..++++..... ....+.+|+|+||+.+... ....+.++++||+||||++
T Consensus 186 ~~~~~~~~~~~~~~------------------------~~~~~~~I~v~T~~~l~~~----~~~~~~~~~~vIiDEaH~~ 237 (282)
T 1rif_A 186 AMIKKIGGGASKDD------------------------KYKNDAPVVVGTWQTVVKQ----PKEWFSQFGMMMNDECHLA 237 (282)
T ss_dssp GGEEECSTTCSSTT------------------------CCCTTCSEEEECHHHHTTS----CGGGGGGEEEEEEETGGGC
T ss_pred ceEEEEeCCCcchh------------------------hhccCCcEEEEchHHHHhh----HHHHHhhCCEEEEECCccC
Confidence 77888877753210 1224679999999876432 2234678899999999999
Q ss_pred hhHhHHhHHHHHHHhhhcccccccccccccccccccccccccccccccCCCCCCCCceeEEEEEEecCCCchh
Q 017196 210 LREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNK 282 (375)
Q Consensus 210 ~~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~~~~ 282 (375)
.+.. +..++..+.. ..+++++|||+++....
T Consensus 238 ~~~~----~~~il~~~~~--------------------------------------~~~~l~lSATp~~~~~~ 268 (282)
T 1rif_A 238 TGKS----ISSIISGLNN--------------------------------------CMFKFGLSGSLRDGKAN 268 (282)
T ss_dssp CHHH----HHHHTTTCTT--------------------------------------CCEEEEECSSCCTTSTT
T ss_pred Cccc----HHHHHHHhhc--------------------------------------CCeEEEEeCCCCCcchH
Confidence 7653 3444444433 45789999999865433
No 70
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=99.85 E-value=2.4e-21 Score=192.02 Aligned_cols=130 Identities=18% Similarity=0.238 Sum_probs=95.4
Q ss_pred CCccHhhHHHHHHhhCCCCCCCCEEEECCCCCchHHHhHHHHHHHhhhcccCCceEEEEcccHHHHHHHHHHHHHhcccc
Q 017196 49 SSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAV 128 (375)
Q Consensus 49 ~~~~~~Q~~~~~~~~~~~~~~~~~ii~a~TGsGKTl~~~l~il~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~ 128 (375)
..|+|||.++++++......+.++++.++||+|||++++. ++..+.... ...++|||+|+ +|+.||.+.++++++
T Consensus 36 ~~L~~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~ai~-~i~~~~~~~-~~~~~LIv~P~-~l~~qw~~e~~~~~~-- 110 (500)
T 1z63_A 36 ANLRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQTIA-VFSDAKKEN-ELTPSLVICPL-SVLKNWEEELSKFAP-- 110 (500)
T ss_dssp SCCCHHHHHHHHHHHHHHHTTCCEEECCCTTSCHHHHHHH-HHHHHHHTT-CCSSEEEEECS-TTHHHHHHHHHHHCT--
T ss_pred ccchHHHHHHHHHHHHHhhCCCCEEEEeCCCCcHHHHHHH-HHHHHHhcC-CCCCEEEEccH-HHHHHHHHHHHHHCC--
Confidence 3799999999987753333678899999999999998644 444444332 33479999995 689999999999987
Q ss_pred CceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcCCCcEEEeCcHHHHHHHhhcCCCCCCCccEEEEecchh
Q 017196 129 GLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDR 208 (375)
Q Consensus 129 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiV~Tp~~l~~~l~~~~~~~~~~~~~vIiDE~h~ 208 (375)
++++..++|+... .....++|+|+||+.+..... +....+++||+||||+
T Consensus 111 ~~~v~~~~g~~~~--------------------------~~~~~~~ivi~t~~~l~~~~~----l~~~~~~~vIvDEaH~ 160 (500)
T 1z63_A 111 HLRFAVFHEDRSK--------------------------IKLEDYDIILTTYAVLLRDTR----LKEVEWKYIVIDEAQN 160 (500)
T ss_dssp TSCEEECSSSTTS--------------------------CCGGGSSEEEEEHHHHTTCHH----HHTCCEEEEEEETGGG
T ss_pred CceEEEEecCchh--------------------------ccccCCcEEEeeHHHHhccch----hcCCCcCEEEEeCccc
Confidence 4667777665421 112357999999998865433 2334688999999999
Q ss_pred hhhHh
Q 017196 209 LLREA 213 (375)
Q Consensus 209 l~~~~ 213 (375)
+.+..
T Consensus 161 ~kn~~ 165 (500)
T 1z63_A 161 IKNPQ 165 (500)
T ss_dssp GSCTT
T ss_pred cCCHh
Confidence 96543
No 71
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=99.84 E-value=4.5e-21 Score=203.17 Aligned_cols=137 Identities=17% Similarity=0.164 Sum_probs=95.8
Q ss_pred CCccHhhHHHHHHhhCCCCCCCCEEEECCCCCchHHHhHHHHHHHhhhcccCCceEEEEcccHHHHHHHHHHHHHhcccc
Q 017196 49 SSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAV 128 (375)
Q Consensus 49 ~~~~~~Q~~~~~~~~~~~~~~~~~ii~a~TGsGKTl~~~l~il~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~ 128 (375)
.+|+|||.+++.+++.. .+.+++++++||+|||++++..+...+..+ ...++|||+|+ .|+.||...+.+.+
T Consensus 152 ~~LrpyQ~eav~~~l~~--~~~~~LLad~tGlGKTi~Ai~~i~~l~~~g--~~~rvLIVvP~-sLl~Qw~~E~~~~f--- 223 (968)
T 3dmq_A 152 TSLIPHQLNIAHDVGRR--HAPRVLLADEVGLGKTIEAGMILHQQLLSG--AAERVLIIVPE-TLQHQWLVEMLRRF--- 223 (968)
T ss_dssp SCCCHHHHHHHHHHHHS--SSCEEEECCCTTSCHHHHHHHHHHHHHHTS--SCCCEEEECCT-TTHHHHHHHHHHHS---
T ss_pred CCCcHHHHHHHHHHHHh--cCCCEEEECCCCCcHHHHHHHHHHHHHHhC--CCCeEEEEeCH-HHHHHHHHHHHHHh---
Confidence 37999999999988752 256799999999999999877766666544 33479999999 99999999997665
Q ss_pred CceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcCCCcEEEeCcHHHHHHHhhcCCCCCCCccEEEEecchh
Q 017196 129 GLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDR 208 (375)
Q Consensus 129 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiV~Tp~~l~~~l~~~~~~~~~~~~~vIiDE~h~ 208 (375)
++++..+.++...... . . .......++|+|+|++.+.........+....+++|||||||+
T Consensus 224 ~l~v~v~~~~~~~~~~-~---~---------------~~~~~~~~dIvI~T~~~L~~~~~~~~~l~~~~~dlVIvDEAH~ 284 (968)
T 3dmq_A 224 NLRFALFDDERYAEAQ-H---D---------------AYNPFDTEQLVICSLDFARRSKQRLEHLCEAEWDLLVVDEAHH 284 (968)
T ss_dssp CCCCEECCHHHHHHHH-H---T---------------TCSSSTTCSEEEECHHHHHTSTTTTHHHHTSCCCEEEECCSSC
T ss_pred CCCEEEEccchhhhhh-h---h---------------cccccccCCEEEEcHHHHhhCHHHHHHhhhcCCCEEEehhhHh
Confidence 5666666554321111 0 0 0011235799999998875432211113345789999999999
Q ss_pred hhhH
Q 017196 209 LLRE 212 (375)
Q Consensus 209 l~~~ 212 (375)
+.+.
T Consensus 285 ~kn~ 288 (968)
T 3dmq_A 285 LVWS 288 (968)
T ss_dssp CCCB
T ss_pred hcCC
Confidence 9654
No 72
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=99.83 E-value=2.4e-20 Score=196.85 Aligned_cols=145 Identities=19% Similarity=0.191 Sum_probs=102.6
Q ss_pred CCccHhhHHHHHHhhCCCC----------CCCCEEEECCCCCchHHHhHHHHHHHhhhcccCCceEEEEcccHHHHHHHH
Q 017196 49 SSLFPVQVAVWQETIGPGL----------FERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVK 118 (375)
Q Consensus 49 ~~~~~~Q~~~~~~~~~~~~----------~~~~~ii~a~TGsGKTl~~~l~il~~l~~~~~~~~~~lil~Pt~~L~~Q~~ 118 (375)
..|+|+|..|++.++..+. .++++++.++||||||+++ ++++..+... ....++|||+|+++|+.|+.
T Consensus 270 ~~~R~~Q~~AI~~il~~i~~~~~~~~~~~~~~~gli~~~TGSGKT~t~-~~l~~ll~~~-~~~~rvLvlvpr~eL~~Q~~ 347 (1038)
T 2w00_A 270 LVMRPYQIAATERILWKIKSSFTAKNWSKPESGGYIWHTTGSGKTLTS-FKAARLATEL-DFIDKVFFVVDRKDLDYQTM 347 (1038)
T ss_dssp EECCHHHHHHHHHHHHHHHHHHHHTCCSSGGGSEEEEECTTSSHHHHH-HHHHHHHTTC-TTCCEEEEEECGGGCCHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHhcccccccccCCCCEEEEecCCCCHHHHH-HHHHHHHHhc-CCCceEEEEeCcHHHHHHHH
Confidence 3699999999998875321 2468999999999999997 6666655432 23358999999999999999
Q ss_pred HHHHHhccccCceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhh-cCCCcEEEeCcHHHHHHHhhcCCC-CCC
Q 017196 119 DVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQEL-QSAVDILVATPGRLMDHINATRGF-TLE 196 (375)
Q Consensus 119 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~IiV~Tp~~l~~~l~~~~~~-~~~ 196 (375)
+.++.+... .+.++.+.. ++.+.+ ..+.+|+|+||++|...+.....+ .++
T Consensus 348 ~~f~~f~~~------~v~~~~s~~---------------------~l~~~L~~~~~~IiVtTiqkl~~~l~~~~~~~~~~ 400 (1038)
T 2w00_A 348 KEYQRFSPD------SVNGSENTA---------------------GLKRNLDKDDNKIIVTTIQKLNNLMKAESDLPVYN 400 (1038)
T ss_dssp HHHHTTSTT------CSSSSCCCH---------------------HHHHHHHCSSCCEEEEEHHHHHHHHHHCCCCGGGG
T ss_pred HHHHHhccc------ccccccCHH---------------------HHHHHhcCCCCCEEEEEHHHHHHHHhcccchhccc
Confidence 999988653 122332222 222233 246899999999999988753222 355
Q ss_pred CccEEEEecchhhhhHhHHhHHHHHHHhh
Q 017196 197 HLCYLVVDETDRLLREAYQAWLPTVLQLT 225 (375)
Q Consensus 197 ~~~~vIiDE~h~l~~~~~~~~l~~i~~~l 225 (375)
...+||+||||++....+ ...+...+
T Consensus 401 ~~~lvIiDEAHrs~~~~~---~~~I~~~~ 426 (1038)
T 2w00_A 401 QQVVFIFDECHRSQFGEA---QKNLKKKF 426 (1038)
T ss_dssp SCEEEEEESCCTTHHHHH---HHHHHHHC
T ss_pred cccEEEEEccchhcchHH---HHHHHHhC
Confidence 778999999999865433 34444444
No 73
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=99.81 E-value=7e-19 Score=178.27 Aligned_cols=132 Identities=25% Similarity=0.285 Sum_probs=111.0
Q ss_pred hCCCCCccHhhHHHHHHhhCCCCCCCCEEEECCCCCchHHHhHHHHHHHhhhcccCCceEEEEcccHHHHHHHHHHHHHh
Q 017196 45 NMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAI 124 (375)
Q Consensus 45 ~~g~~~~~~~Q~~~~~~~~~~~~~~~~~ii~a~TGsGKTl~~~l~il~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~ 124 (375)
-+|+ .|+++|..+++.++ .|+ +..+.||+|||++|++|++.....+ .+++|++||++||.|.+..+..+
T Consensus 75 ~lG~-~Pt~VQ~~~ip~Ll----qG~--IaeakTGeGKTLvf~Lp~~L~aL~G----~qv~VvTPTreLA~Qdae~m~~l 143 (997)
T 2ipc_A 75 YLGM-RHFDVQLIGGAVLH----EGK--IAEMKTGEGKTLVATLAVALNALTG----KGVHVVTVNDYLARRDAEWMGPV 143 (997)
T ss_dssp HTCC-CCCHHHHHHHHHHH----TTS--EEECCSTHHHHHHHHHHHHHHHTTC----SCCEEEESSHHHHHHHHHHHHHH
T ss_pred HhCC-CCcHHHHhhccccc----CCc--eeeccCCCchHHHHHHHHHHHHHhC----CCEEEEeCCHHHHHHHHHHHHHH
Confidence 3798 99999999998777 566 9999999999999999997555432 36999999999999999999999
Q ss_pred ccccCceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcCCCcEEEeCcHHH-HHHHhhcC-----CCCCC--
Q 017196 125 APAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRL-MDHINATR-----GFTLE-- 196 (375)
Q Consensus 125 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiV~Tp~~l-~~~l~~~~-----~~~~~-- 196 (375)
....++++..++|+.+.... ....+++|+||||+.| +++++... .+.++
T Consensus 144 ~~~lGLsv~~i~Gg~~~~~r-----------------------~~ay~~DIvyGTpgrlgfDyLrd~m~~~~~~l~~r~d 200 (997)
T 2ipc_A 144 YRGLGLSVGVIQHASTPAER-----------------------RKAYLADVTYVTNSELGFDYLRDNMAISPDQLVLRHD 200 (997)
T ss_dssp HHTTTCCEEECCTTCCHHHH-----------------------HHHHTSSEEEEEHHHHHHHHHHHTSCSSTTTCCSCSS
T ss_pred HHhcCCeEEEEeCCCCHHHH-----------------------HHHcCCCEEEECchhhhhHHHHHhhhcchhhcccccC
Confidence 99999999999998764322 2233589999999999 88887742 24577
Q ss_pred -CccEEEEecchhhh
Q 017196 197 -HLCYLVVDETDRLL 210 (375)
Q Consensus 197 -~~~~vIiDE~h~l~ 210 (375)
.+.++||||+|.++
T Consensus 201 ~~l~~lIIDEaDsmL 215 (997)
T 2ipc_A 201 HPLHYAIIDEVDSIL 215 (997)
T ss_dssp SSSCEEEETTHHHHT
T ss_pred CCcceEEEechHHHH
Confidence 89999999999996
No 74
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=99.80 E-value=3.5e-19 Score=159.20 Aligned_cols=117 Identities=28% Similarity=0.309 Sum_probs=94.4
Q ss_pred CccHhhHHHHHHhhCCCCCCCCEEEECCCCCchHHHhHHHHHHHhhhcccCCceEEEEcccHHHHHHHHHHHHHhccccC
Q 017196 50 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVG 129 (375)
Q Consensus 50 ~~~~~Q~~~~~~~~~~~~~~~~~ii~a~TGsGKTl~~~l~il~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~ 129 (375)
.|+++|.++++.++ .++++++++|||+|||.+++.++... +.+++|++|+++|+.|+.+.++++ +
T Consensus 93 ~l~~~Q~~ai~~~~----~~~~~ll~~~tG~GKT~~a~~~~~~~-------~~~~liv~P~~~L~~q~~~~~~~~----~ 157 (237)
T 2fz4_A 93 SLRDYQEKALERWL----VDKRGCIVLPTGSGKTHVAMAAINEL-------STPTLIVVPTLALAEQWKERLGIF----G 157 (237)
T ss_dssp CCCHHHHHHHHHHT----TTSEEEEEESSSTTHHHHHHHHHHHS-------CSCEEEEESSHHHHHHHHHHHGGG----C
T ss_pred CcCHHHHHHHHHHH----hCCCEEEEeCCCCCHHHHHHHHHHHc-------CCCEEEEeCCHHHHHHHHHHHHhC----C
Confidence 79999999998876 45679999999999999987766542 347999999999999999999883 5
Q ss_pred ce-EEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcCCCcEEEeCcHHHHHHHhhcCCCCCCCccEEEEecchh
Q 017196 130 LS-VGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDR 208 (375)
Q Consensus 130 ~~-v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiV~Tp~~l~~~l~~~~~~~~~~~~~vIiDE~h~ 208 (375)
+. +..+.|+.. ...+|+|+|++.+....... ...+++|||||+|+
T Consensus 158 ~~~v~~~~g~~~------------------------------~~~~i~v~T~~~l~~~~~~~----~~~~~llIiDEaH~ 203 (237)
T 2fz4_A 158 EEYVGEFSGRIK------------------------------ELKPLTVSTYDSAYVNAEKL----GNRFMLLIFDEVHH 203 (237)
T ss_dssp GGGEEEESSSCB------------------------------CCCSEEEEEHHHHHHTHHHH----TTTCSEEEEECSSC
T ss_pred CCeEEEEeCCCC------------------------------CcCCEEEEeHHHHHhhHHHh----cccCCEEEEECCcc
Confidence 67 777777642 34689999999987766542 24588999999999
Q ss_pred hhhHhHH
Q 017196 209 LLREAYQ 215 (375)
Q Consensus 209 l~~~~~~ 215 (375)
+.+..+.
T Consensus 204 l~~~~~~ 210 (237)
T 2fz4_A 204 LPAESYV 210 (237)
T ss_dssp CCTTTHH
T ss_pred CCChHHH
Confidence 9877654
No 75
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=99.79 E-value=6.5e-20 Score=186.14 Aligned_cols=207 Identities=13% Similarity=0.030 Sum_probs=136.0
Q ss_pred CCCCEEEECCCCCchHHHhHHHHHHHhhhcccCCceEEEEcccHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHH
Q 017196 68 FERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISE 147 (375)
Q Consensus 68 ~~~~~ii~a~TGsGKTl~~~l~il~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 147 (375)
.+++++++||||||||+ +++..+... ...+|++||++||.|+++.+++. ++++..++|+......
T Consensus 154 ~rk~vlv~apTGSGKT~----~al~~l~~~----~~gl~l~PtR~LA~Qi~~~l~~~----g~~v~lltG~~~~iv~--- 218 (677)
T 3rc3_A 154 QRKIIFHSGPTNSGKTY----HAIQKYFSA----KSGVYCGPLKLLAHEIFEKSNAA----GVPCDLVTGEERVTVQ--- 218 (677)
T ss_dssp CCEEEEEECCTTSSHHH----HHHHHHHHS----SSEEEEESSHHHHHHHHHHHHHT----TCCEEEECSSCEECCS---
T ss_pred CCCEEEEEcCCCCCHHH----HHHHHHHhc----CCeEEEeCHHHHHHHHHHHHHhc----CCcEEEEECCeeEEec---
Confidence 68899999999999998 334444433 14699999999999999999876 6788888887542000
Q ss_pred HhhcCccccCccCCchhHHHhhcCCCcEEEeCcHHHHHHHhhcCCCCCCCccEEEEecchhhhhHhHHhHHHHHHHhhhc
Q 017196 148 LIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRS 227 (375)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~IiV~Tp~~l~~~l~~~~~~~~~~~~~vIiDE~h~l~~~~~~~~l~~i~~~l~~ 227 (375)
--.+..+++++|++.+ .....+++|||||+|++.+.++...+..++..++.
T Consensus 219 --------------------TpGr~~~il~~T~e~~---------~l~~~v~lvVIDEaH~l~d~~~g~~~~~~l~~l~~ 269 (677)
T 3rc3_A 219 --------------------PNGKQASHVSCTVEMC---------SVTTPYEVAVIDEIQMIRDPARGWAWTRALLGLCA 269 (677)
T ss_dssp --------------------TTCCCCSEEEEEGGGC---------CSSSCEEEEEECSGGGGGCTTTHHHHHHHHHHCCE
T ss_pred --------------------CCCcccceeEecHhHh---------hhcccCCEEEEecceecCCccchHHHHHHHHccCc
Confidence 0011367888887543 12467799999999999888787777777766652
Q ss_pred ccccccccccccccccccccccccccccccCCCCCCCCceeEEEEEEecCCCchhhhccccCCCeEEecCCccccCcccc
Q 017196 228 DNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERL 307 (375)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~i 307 (375)
...+++++|||.+ .+..+.... .....+.... . ....
T Consensus 270 -------------------------------------~~i~il~~SAT~~-~i~~l~~~~-~~~~~v~~~~-r---~~~l 306 (677)
T 3rc3_A 270 -------------------------------------EEVHLCGEPAAID-LVMELMYTT-GEEVEVRDYK-R---LTPI 306 (677)
T ss_dssp -------------------------------------EEEEEEECGGGHH-HHHHHHHHH-TCCEEEEECC-C---SSCE
T ss_pred -------------------------------------cceEEEeccchHH-HHHHHHHhc-CCceEEEEee-e---cchH
Confidence 1578999999963 233333222 1222221110 0 0000
Q ss_pred eeEEEeccCCCcHHHHHHHHHhcCCCeEEEEcCChhhHHHHHHHHHHhcCCcceEEeccccccccccC
Q 017196 308 ESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRR 375 (375)
Q Consensus 308 ~~~~~~~~~~~k~~~l~~ll~~~~~~k~lIF~~s~~~a~~l~~~L~~~g~~~~~~~~lh~~~~~~~R~ 375 (375)
.. .. ... ..+.... ...+|||+++++++.+++.|... ++.+..+||+|++++|+
T Consensus 307 ~~----~~--~~l----~~l~~~~-~g~iIf~~s~~~ie~la~~L~~~---g~~v~~lHG~L~~~~R~ 360 (677)
T 3rc3_A 307 SV----LD--HAL----ESLDNLR-PGDCIVCFSKNDIYSVSRQIEIR---GLESAVIYGSLPPGTKL 360 (677)
T ss_dssp EE----CS--SCC----CSGGGCC-TTEEEECSSHHHHHHHHHHHHHT---TCCCEEECTTSCHHHHH
T ss_pred HH----HH--HHH----HHHHhcC-CCCEEEEcCHHHHHHHHHHHHhc---CCCeeeeeccCCHHHHH
Confidence 00 00 000 0112223 34589999999999999999965 48899999999998873
No 76
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=99.79 E-value=9e-19 Score=182.65 Aligned_cols=148 Identities=18% Similarity=0.107 Sum_probs=103.3
Q ss_pred CCccHhhHHHHHHhhCCCCCCCCEEEECCCCCchHHHhHHHHHHHhhhcccCCceEEEEcccHHHHHHHHHHHHHhcccc
Q 017196 49 SSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAV 128 (375)
Q Consensus 49 ~~~~~~Q~~~~~~~~~~~~~~~~~ii~a~TGsGKTl~~~l~il~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~ 128 (375)
.+|+|||.+++++++.....+.++|++.+||+|||+.++..+...+... .....+||||| ..|+.||.+.+.++++
T Consensus 235 ~~Lr~yQ~egv~~l~~~~~~~~~~ILademGlGKT~~ai~~i~~l~~~~-~~~~~~LIV~P-~sll~qW~~E~~~~~p-- 310 (800)
T 3mwy_W 235 GELRDFQLTGINWMAFLWSKGDNGILADEMGLGKTVQTVAFISWLIFAR-RQNGPHIIVVP-LSTMPAWLDTFEKWAP-- 310 (800)
T ss_dssp SCCCTHHHHHHHHHHHHHTTTCCEEECCCTTSSTTHHHHHHHHHHHHHH-SCCSCEEEECC-TTTHHHHHHHHHHHST--
T ss_pred CCcCHHHHHHHHHHHHHhhcCCCEEEEeCCCcchHHHHHHHHHHHHHhc-CCCCCEEEEEC-chHHHHHHHHHHHHCC--
Confidence 3899999999998875556788999999999999998655444443333 23346999999 6788999999999987
Q ss_pred CceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcCCCcEEEeCcHHHHHHHhhcCCCCCCCccEEEEecchh
Q 017196 129 GLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDR 208 (375)
Q Consensus 129 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiV~Tp~~l~~~l~~~~~~~~~~~~~vIiDE~h~ 208 (375)
++++..++|+...........-... ..........++|+|+|++.+...... +....+++||+||||+
T Consensus 311 ~~~v~~~~g~~~~r~~~~~~~~~~~---------~~~~~~~~~~~dvvitTy~~l~~~~~~---l~~~~w~~vIvDEaH~ 378 (800)
T 3mwy_W 311 DLNCICYMGNQKSRDTIREYEFYTN---------PRAKGKKTMKFNVLLTTYEYILKDRAE---LGSIKWQFMAVDEAHR 378 (800)
T ss_dssp TCCEEECCCSSHHHHHHHHHHSCSC---------C-----CCCCCSEEEECTTHHHHTHHH---HHTSEEEEEEETTGGG
T ss_pred CceEEEEeCCHHHHHHHHHHHhhcc---------ccccccccccCCEEEecHHHHHhhHHH---HhcCCcceeehhhhhh
Confidence 5788888887665544332110000 000011234579999999998765443 2233688999999999
Q ss_pred hhhH
Q 017196 209 LLRE 212 (375)
Q Consensus 209 l~~~ 212 (375)
+-+.
T Consensus 379 lkn~ 382 (800)
T 3mwy_W 379 LKNA 382 (800)
T ss_dssp GCCS
T ss_pred hcCc
Confidence 8543
No 77
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=99.78 E-value=9.2e-18 Score=170.94 Aligned_cols=143 Identities=17% Similarity=0.092 Sum_probs=99.0
Q ss_pred CccHhhHHHHHHhhCCC-----CCCCCEEEECCCCCchHHHhHHHHHHHhhhccc---CCceEEEEcccHHHHHHHHHHH
Q 017196 50 SLFPVQVAVWQETIGPG-----LFERDLCINSPTGSGKTLSYALPIVQTLSNRAV---RCLRALVVLPTRDLALQVKDVF 121 (375)
Q Consensus 50 ~~~~~Q~~~~~~~~~~~-----~~~~~~ii~a~TGsGKTl~~~l~il~~l~~~~~---~~~~~lil~Pt~~L~~Q~~~~~ 121 (375)
.|+|||.+++.+++... ..+.++|+..+||+|||+.++..+...+...+. ...++|||+|+ +|+.||.+++
T Consensus 55 ~LrpyQ~~gv~~l~~~~~~~~~~~~~g~ILad~mGlGKT~~~i~~i~~l~~~~~~~~p~~~~~LiV~P~-sll~qW~~E~ 133 (644)
T 1z3i_X 55 VLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIWTLLKQSPDCKPEIDKVIVVSPS-SLVRNWYNEV 133 (644)
T ss_dssp TCCHHHHHHHHHHHHHHTTSSSTTCCEEEECCCTTSCHHHHHHHHHHHHHHCCTTSSCSCSCEEEEECH-HHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHhhhcccccCCCCeEeeeCCCchHHHHHHHHHHHHHHhCccccCCCCcEEEEecH-HHHHHHHHHH
Confidence 78999999999876322 356779999999999999976666555544321 22369999997 8899999999
Q ss_pred HHhccccCceEEEeecCCchHHH--HHHHhhcCccccCccCCchhHHHhhcCCCcEEEeCcHHHHHHHhhcCCCCCCCcc
Q 017196 122 AAIAPAVGLSVGLAVGQSSIADE--ISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLC 199 (375)
Q Consensus 122 ~~~~~~~~~~v~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiV~Tp~~l~~~l~~~~~~~~~~~~ 199 (375)
.++++. .+.+..++++...... ...+.... .....++|+|+|++.+..... .+....++
T Consensus 134 ~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~---------------~~~~~~~vvi~ty~~l~~~~~---~l~~~~~~ 194 (644)
T 1z3i_X 134 GKWLGG-RVQPVAIDGGSKDEIDSKLVNFISQQ---------------GMRIPTPILIISYETFRLHAE---VLHKGKVG 194 (644)
T ss_dssp HHHHGG-GCCEEEECSSCHHHHHHHHHHHHCCC---------------SSCCSCCEEEEEHHHHHHHTT---TTTTSCCC
T ss_pred HHHcCC-CeeEEEEeCCCHHHHHHHHHHHHHhc---------------CCCCCCcEEEeeHHHHHhhHH---HhhcCCcc
Confidence 999875 5667777776532211 11111100 001247899999998875432 24456788
Q ss_pred EEEEecchhhhhH
Q 017196 200 YLVVDETDRLLRE 212 (375)
Q Consensus 200 ~vIiDE~h~l~~~ 212 (375)
+||+||||++-+.
T Consensus 195 ~vI~DEaH~ikn~ 207 (644)
T 1z3i_X 195 LVICDEGHRLKNS 207 (644)
T ss_dssp EEEETTGGGCCTT
T ss_pred EEEEECceecCCh
Confidence 9999999999654
No 78
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=99.69 E-value=2.3e-17 Score=165.19 Aligned_cols=156 Identities=18% Similarity=0.098 Sum_probs=109.4
Q ss_pred CCCCccHhhHHHHHHhhCCCCCCCCEEEECCCCCchHHHhHHHHHHHhhhcccCCceEEEEcccHHHHHHHHHHHHHhcc
Q 017196 47 GISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAP 126 (375)
Q Consensus 47 g~~~~~~~Q~~~~~~~~~~~~~~~~~ii~a~TGsGKTl~~~l~il~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~ 126 (375)
|+ +|+|+|.++...+...+..|+++++.||||+|||++|++|++. .+.+++|++||++|+.|+.+.+..+..
T Consensus 1 ~~-~~r~~Q~~~~~~v~~~l~~~~~~~~~a~TGtGKT~~~l~p~l~-------~~~~v~i~~pt~~l~~q~~~~~~~l~~ 72 (551)
T 3crv_A 1 MV-KLRDWQEKLKDKVIEGLRNNFLVALNAPTGSGKTLFSLLVSLE-------VKPKVLFVVRTHNEFYPIYRDLTKIRE 72 (551)
T ss_dssp CC-SCCHHHHHHHHHHHHHHHTTCEEEEECCTTSSHHHHHHHHHHH-------HCSEEEEEESSGGGHHHHHHHHTTCCC
T ss_pred CC-CCCHHHHHHHHHHHHHHHcCCcEEEECCCCccHHHHHHHHHHh-------CCCeEEEEcCCHHHHHHHHHHHHHHhh
Confidence 45 7999999988877766778999999999999999999999997 234799999999999999999999877
Q ss_pred ccCceEEEeecCCchHHHH--H------------HHhhcCcccc----------------CccCCchhHHHhhcCCCcEE
Q 017196 127 AVGLSVGLAVGQSSIADEI--S------------ELIKRPKLEA----------------GICYDPEDVLQELQSAVDIL 176 (375)
Q Consensus 127 ~~~~~v~~~~~~~~~~~~~--~------------~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~Ii 176 (375)
..++++..+.|........ . .+.+...... ....-+=...+....+++||
T Consensus 73 ~~~~~~~~l~gr~~~c~~~~~~~~~~~~~c~~c~~~~~~~~~g~~~~~~~~~~~~~~~G~~~~~Cpy~~ar~~~~~adIV 152 (551)
T 3crv_A 73 KRNITFSFLVGKPSSCLYAEKGAESEDIPCKYCELKGSIVEVKTDDSPLSLVKKLKKDGLQDKFCPYYSLLNSLYKADVI 152 (551)
T ss_dssp SSCCCEEECCCHHHHCTTBCTTCCGGGCCGGGCTTTTCCCCCCCCSCHHHHHHHHHHHHHHHTCCHHHHHHHHGGGCSEE
T ss_pred hcCccEEEEccccccCcCchhcCCCcccccCCCCCccccccccccCCHHHHHHHHHHcCCcCCcCccHHHHhhhhcCCEE
Confidence 7788888888754321000 0 0000000000 00000011123344578999
Q ss_pred EeCcHHHHHHHhhcCCCCC-CCccEEEEecchhhhh
Q 017196 177 VATPGRLMDHINATRGFTL-EHLCYLVVDETDRLLR 211 (375)
Q Consensus 177 V~Tp~~l~~~l~~~~~~~~-~~~~~vIiDE~h~l~~ 211 (375)
|+|+..|.+...+.. +.+ ....++||||||++.+
T Consensus 153 V~~~~~l~~~~~~~~-~~~~~~~~~vIiDEAHnl~d 187 (551)
T 3crv_A 153 ALTYPYFFIDRYREF-IDIDLREYMIVIDEAHNLDK 187 (551)
T ss_dssp EEETHHHHCHHHHTT-SCCCSTTEEEEETTGGGGGG
T ss_pred EeCchHhcCHHHHHh-cCCCcCCeEEEEecccchHH
Confidence 999999988764422 332 4677999999999977
No 79
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=99.66 E-value=4.4e-15 Score=148.16 Aligned_cols=311 Identities=16% Similarity=0.096 Sum_probs=181.3
Q ss_pred hCCCCCccHhhHHHHHHhhCCCCCCCCEEEECCCCCchHHHhHHHHHHHhhhcccCCceEEEEcccHHHHHHHHHHHHHh
Q 017196 45 NMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAI 124 (375)
Q Consensus 45 ~~g~~~~~~~Q~~~~~~~~~~~~~~~~~ii~a~TGsGKTl~~~l~il~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~ 124 (375)
-+|. .|+++|..+.-.+. .|+ |..+.||+|||+++.+|++.....+ ..+.|++||..||.|-...+..+
T Consensus 71 ~lg~-r~~dvQligg~~L~----~G~--iaEM~TGEGKTLva~lp~~lnAL~G----~~vhVvT~ndyLA~rdae~m~~l 139 (822)
T 3jux_A 71 TLGM-RPFDVQVMGGIALH----EGK--VAEMKTGEGKTLAATMPIYLNALIG----KGVHLVTVNDYLARRDALWMGPV 139 (822)
T ss_dssp HTSC-CCCHHHHHHHHHHH----TTC--EEECCTTSCHHHHTHHHHHHHHTTS----SCEEEEESSHHHHHHHHHHHHHH
T ss_pred HhCC-CCcHHHHHHHHHHh----CCC--hhhccCCCCccHHHHHHHHHHHhcC----CceEEEeccHHHHHhHHHHHHHH
Confidence 3576 89999998853333 455 9999999999999999998665554 35999999999999999999999
Q ss_pred ccccCceEEEeecCC-------chHHHHHHHhhcC-----cc-cc----------------CccCCchhHHHhhcCCCcE
Q 017196 125 APAVGLSVGLAVGQS-------SIADEISELIKRP-----KL-EA----------------GICYDPEDVLQELQSAVDI 175 (375)
Q Consensus 125 ~~~~~~~v~~~~~~~-------~~~~~~~~~~~~~-----~~-~~----------------~~~~~~~~~~~~~~~~~~I 175 (375)
....|++++.+.+.. .........+..+ .. .. .-...+++..+.. .|||
T Consensus 140 ~~~Lglsvg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~err~aY--~~DI 217 (822)
T 3jux_A 140 YLFLGLRVGVINSLGKSYEVVWKNPDLARKAIEENWSVWPDGFNGEVLKEESMNKEAVEAFQVELKEITRKEAY--LCDV 217 (822)
T ss_dssp HHHTTCCEEEEETTTEEEEEEESSHHHHHHHHHTTCCSSCTTCCSSSCCGGGSCHHHHTTTCEECCBCCHHHHH--HSSE
T ss_pred HHHhCCEEEEEcCCCcccccccccchhhhhhhcccccccccccccccccccccccccchhccccCCHHHHHHHh--cCCC
Confidence 999999999998831 1111111111110 00 00 0012222222222 4799
Q ss_pred EEeCcHHH-HHHHhhcCC-----CCCCCccEEEEecchhhhh-Hh---------------HHhHHHHHHHhhhccc----
Q 017196 176 LVATPGRL-MDHINATRG-----FTLEHLCYLVVDETDRLLR-EA---------------YQAWLPTVLQLTRSDN---- 229 (375)
Q Consensus 176 iV~Tp~~l-~~~l~~~~~-----~~~~~~~~vIiDE~h~l~~-~~---------------~~~~l~~i~~~l~~~~---- 229 (375)
+-||..-| .++++..-. .-.+.+.+.||||+|.++= .. ....+..+...+....
T Consensus 218 tYgTn~EfgFDYLRDnm~~~~~~~vqR~~~~aIVDEvDSiLIDeArtPLiISg~~~~~~~~y~~~~~~v~~l~~~~dy~v 297 (822)
T 3jux_A 218 TYGTNNEFGFDYLRDNLVLDYNDKVQRGHFYAIVDEADSVLIDEARTPLIISGPSKESPSVYRRFAQIAKKFVKDKDFTV 297 (822)
T ss_dssp EEEEHHHHHHHHHHHTSCSSTTSCCCCCCCEEEEETHHHHHTTGGGSCEEEECCCCSCHHHHHHHHHHTTSSCBTTTEEE
T ss_pred EEccCcchhhHhHHhhccCCHHHhccCCCCeEEEecccceeecCCCCCceeeCCCCCccHHHHHHHHHHHhcCcCCcEEE
Confidence 99997665 566654321 2257788999999999831 11 1111122222221100
Q ss_pred --cccccc---------------cccccccc----------------cccc---------ccccccccccC---------
Q 017196 230 --ENRFSD---------------ASTFLPSA----------------FGSL---------KTIRRCGVERG--------- 258 (375)
Q Consensus 230 --~~~~~~---------------~~~~~~~~----------------~~~~---------~~~~~~~~~~~--------- 258 (375)
..+.-. .+...+.. +... -.+.+.-.+|.
T Consensus 298 dek~~~v~lTe~G~~~~E~~l~i~nly~~~n~~l~~~i~~AL~A~~l~~~d~dYiV~dg~V~iVDe~TGR~m~grr~s~G 377 (822)
T 3jux_A 298 DEKARTIILTEEGVAKAEKIIGVENLYDPGNVSLLYHLINALKALHLFKKDVDYVVMNGEVIIVDEFTGRLLPGRRYSGG 377 (822)
T ss_dssp CCSSSCEEECHHHHHHHHHHHTCSCTTSGGGHHHHHHHHHHHHHHHHSTTTSSEEEETTEEEECSSSSCSCCCSCCCGGG
T ss_pred EcccCeEEECHHHHHHHHHHhCCccccchhhhHHHHHHHHHHHHHHHHcCCCcEEEECCEEEEEECCCCcCCCCCcCchH
Confidence 000000 00000000 0000 01111111111
Q ss_pred -----------------------CCCCCCCc-eeEEEEEEecCCCchhhhccccCCCeEEecCCccccCcccceeEEEec
Q 017196 259 -----------------------FKDKPYPR-LVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLIC 314 (375)
Q Consensus 259 -----------------------~~~~~~~~-~q~i~~SATl~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~~~~~ 314 (375)
+.|..+.. .++.+||+|......++...+. ...+.+..... ......+-.+..
T Consensus 378 LHQaiEaKEgv~i~~e~~tla~IT~Qn~Fr~Y~kL~GMTGTa~te~~Ef~~iY~--l~vv~IPtnkp-~~R~d~~d~vy~ 454 (822)
T 3jux_A 378 LHQAIEAKEGVPIKEESITYATITFQNYFRMYEKLAGMTGTAKTEESEFVQVYG--MEVVVIPTHKP-MIRKDHDDLVFR 454 (822)
T ss_dssp HHHHHHHHHSSCCCCCCCEEEEECHHHHHTTSSEEEEEESSCGGGHHHHHHHSC--CCEEECCCSSC-CCCEECCCEEES
T ss_pred HHHHHHHHcCCCCCCCcchhHHHHHHHHHHHhhHHeEECCCCchHHHHHHHHhC--CeEEEECCCCC-cceeecCcEEEe
Confidence 11111111 3589999999877667665553 22333333221 111222234456
Q ss_pred cCCCcHHHHHHHHHhc--CCCeEEEEcCChhhHHHHHHHHHHhcCCcceEEecccccccccc
Q 017196 315 ESKLKPLYLVALLQSL--GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVR 374 (375)
Q Consensus 315 ~~~~k~~~l~~ll~~~--~~~k~lIF~~s~~~a~~l~~~L~~~g~~~~~~~~lh~~~~~~~R 374 (375)
+...|...+.+.+... .+.++||||+|++.|+.+++.|.. .|+++..+||+..+++|
T Consensus 455 t~~eK~~al~~~I~~~~~~gqpVLVFt~S~e~sE~Ls~~L~~---~Gi~~~vLhgkq~~rE~ 513 (822)
T 3jux_A 455 TQKEKYEKIVEEIEKRYKKGQPVLVGTTSIEKSELLSSMLKK---KGIPHQVLNAKYHEKEA 513 (822)
T ss_dssp SHHHHHHHHHHHHHHHHHHTCCEEEEESSHHHHHHHHHHHHT---TTCCCEEECSCHHHHHH
T ss_pred cHHHHHHHHHHHHHHHhhCCCCEEEEECCHHHHHHHHHHHHH---CCCCEEEeeCCchHHHH
Confidence 6677888888888753 466899999999999999999994 45999999999777665
No 80
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=99.60 E-value=7.2e-16 Score=153.83 Aligned_cols=153 Identities=18% Similarity=0.165 Sum_probs=92.8
Q ss_pred CCCCCccHhhHHHHHHhhCCCCCCCCEEEECCCCCchHHHhHHHHHHHhhhcccCCceEEEEcccHHHHHHHHHHHHHhc
Q 017196 46 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIA 125 (375)
Q Consensus 46 ~g~~~~~~~Q~~~~~~~~~~~~~~~~~ii~a~TGsGKTl~~~l~il~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~ 125 (375)
.|+ +|+++|.+++..+.+.+..|+++++.||||+|||++|++|++.. +.+++|++||++|++|+.+.+..+
T Consensus 4 ~~~-~~r~~Q~~~~~~v~~~~~~~~~~~~~a~TGtGKT~~~l~~~~~~-------~~~~~~~~~t~~l~~q~~~~~~~l- 74 (540)
T 2vl7_A 4 LKL-QLRQWQAEKLGEAINALKHGKTLLLNAKPGLGKTVFVEVLGMQL-------KKKVLIFTRTHSQLDSIYKNAKLL- 74 (540)
T ss_dssp ------CCHHHHHHHHHHHHHHTTCEEEEECCTTSCHHHHHHHHHHHH-------TCEEEEEESCHHHHHHHHHHHGGG-
T ss_pred CCC-CCCHHHHHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHhC-------CCcEEEEcCCHHHHHHHHHHHHhc-
Confidence 367 89999999987776666688999999999999999999998753 247999999999999999888774
Q ss_pred cccCceEEEeecCCchHHHHHHHhhcCcc-------c----cCccCCchhHH---------------HhhcCCCcEEEeC
Q 017196 126 PAVGLSVGLAVGQSSIADEISELIKRPKL-------E----AGICYDPEDVL---------------QELQSAVDILVAT 179 (375)
Q Consensus 126 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-------~----~~~~~~~~~~~---------------~~~~~~~~IiV~T 179 (375)
++++..+.|................+ . ...+..+.+.+ +....+++|+|+|
T Consensus 75 ---~~~~~~l~gr~~lC~~~~~~~~~~~~~c~~c~~~~~~~~~gd~~~~~~~~~~~~~~~~Cpy~~~r~~~~~adiVV~n 151 (540)
T 2vl7_A 75 ---GLKTGFLIGKSASCIYAQGDEEPDEINCSKCRLKDKIKTIEDKEPSKLIEEFKDAVDYCPYYSLRANLKDKDVIAMT 151 (540)
T ss_dssp ---TCCEEEC---------------------------------------------------------CTTGGGCSEEEEE
T ss_pred ---CCcEEEecCCccccCCchhcccccccCCCCCCchhcccccccCCcHHHHHHHhhhcCCChHHHHHHHhhcCCEEEEC
Confidence 56666666644211110000000000 0 00000001111 2223457999999
Q ss_pred cHHHHHHHhhcCCC------CCCCccEEEEecchhhh
Q 017196 180 PGRLMDHINATRGF------TLEHLCYLVVDETDRLL 210 (375)
Q Consensus 180 p~~l~~~l~~~~~~------~~~~~~~vIiDE~h~l~ 210 (375)
+..|.+........ .+...+++||||||++.
T Consensus 152 ~~~l~~~~~~~~~~~~~~~~~~~~~~~vIiDEAHnl~ 188 (540)
T 2vl7_A 152 YPYLFQKPIRNSVFCNKDDCLKLEDYLIVIDEAHNLL 188 (540)
T ss_dssp THHHHSHHHHHHHSCSSTTSCCGGGEEEEETTGGGGG
T ss_pred hHHhcCHHHHHhhCcccccccCcCCCEEEEEccccHH
Confidence 99998754331101 23567899999999993
No 81
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=99.44 E-value=9.6e-14 Score=140.29 Aligned_cols=89 Identities=21% Similarity=0.177 Sum_probs=76.7
Q ss_pred CccHhhHHHHHHhhCCCCCCCCEEEECCCCCchHHHhHHHHHHHhhhcccCCceEEEEcccHHHHHHHHHHHHHhccccC
Q 017196 50 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVG 129 (375)
Q Consensus 50 ~~~~~Q~~~~~~~~~~~~~~~~~ii~a~TGsGKTl~~~l~il~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~ 129 (375)
+|++.|.+....+.+.+..|+++++.||||+|||++|++|++..+... +.+++|++||++|+.|+.+.+..+....+
T Consensus 3 ~~R~~Q~~~~~~v~~~l~~~~~~~~~apTGtGKT~a~l~p~l~~~~~~---~~kvli~t~T~~l~~Qi~~el~~l~~~~~ 79 (620)
T 4a15_A 3 ENRQYQVEAIDFLRSSLQKSYGVALESPTGSGKTIMALKSALQYSSER---KLKVLYLVRTNSQEEQVIKELRSLSSTMK 79 (620)
T ss_dssp --CHHHHHHHHHHHHHHHHSSEEEEECCTTSCHHHHHHHHHHHHHHHH---TCEEEEEESSHHHHHHHHHHHHHHHHHSC
T ss_pred CCCHHHHHHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHHHhhhhc---CCeEEEECCCHHHHHHHHHHHHHHhhccC
Confidence 689999999888877777899999999999999999999999988653 24799999999999999999999887668
Q ss_pred ceEEEeecCCch
Q 017196 130 LSVGLAVGQSSI 141 (375)
Q Consensus 130 ~~v~~~~~~~~~ 141 (375)
+++..+.|+.+.
T Consensus 80 ~~~~~l~gr~~l 91 (620)
T 4a15_A 80 IRAIPMQGRVNM 91 (620)
T ss_dssp CCEEECCCHHHH
T ss_pred eEEEEEECCCcc
Confidence 888888887553
No 82
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=99.40 E-value=7.5e-12 Score=127.53 Aligned_cols=73 Identities=26% Similarity=0.258 Sum_probs=57.1
Q ss_pred CCCCccHhhHHHHHHhhCCCCCCC-CEEEECCCCCchHHHhHHHHHHHhhhcccCCceEEEEcccHHHHHHHHHHHHHhc
Q 017196 47 GISSLFPVQVAVWQETIGPGLFER-DLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIA 125 (375)
Q Consensus 47 g~~~~~~~Q~~~~~~~~~~~~~~~-~~ii~a~TGsGKTl~~~l~il~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~ 125 (375)
+| .|++.|..++..+...+..|. ..++.+.||||||++++- ++.... ..+|||+|+..+|.|++..++.++
T Consensus 6 ~~-~~~~~q~~ai~~l~~~~~~~~~~~~l~g~tgs~kt~~~a~-~~~~~~------~~~lvv~~~~~~A~ql~~el~~~~ 77 (664)
T 1c4o_A 6 GP-SPKGDQPKAIAGLVEALRDGERFVTLLGATGTGKTVTMAK-VIEALG------RPALVLAPNKILAAQLAAEFRELF 77 (664)
T ss_dssp SC-CCCTTHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHH-HHHHHT------CCEEEEESSHHHHHHHHHHHHHHC
T ss_pred CC-CCCCCChHHHHHHHHHHhcCCCcEEEEcCCCcHHHHHHHH-HHHHhC------CCEEEEecCHHHHHHHHHHHHHHC
Confidence 56 899999999988776555554 467889999999987543 233321 149999999999999999999997
Q ss_pred cc
Q 017196 126 PA 127 (375)
Q Consensus 126 ~~ 127 (375)
+.
T Consensus 78 ~~ 79 (664)
T 1c4o_A 78 PE 79 (664)
T ss_dssp TT
T ss_pred CC
Confidence 64
No 83
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=99.28 E-value=1e-10 Score=119.11 Aligned_cols=71 Identities=18% Similarity=0.185 Sum_probs=55.2
Q ss_pred CccHhhHHHHHHhhCCCCCCC-CEEEECCCCCchHHHhHHHHHHHhhhcccCCceEEEEcccHHHHHHHHHHHHHhccc
Q 017196 50 SLFPVQVAVWQETIGPGLFER-DLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPA 127 (375)
Q Consensus 50 ~~~~~Q~~~~~~~~~~~~~~~-~~ii~a~TGsGKTl~~~l~il~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~ 127 (375)
+|+..|..++..+...+..|. ...+.+.||||||++.+- ++... +. .+|||+|+..+|.|++..++.+.+.
T Consensus 12 ~p~~~Q~~~i~~l~~~~~~~~~~~~l~g~~gs~k~~~~a~-~~~~~-----~~-~~lvv~~~~~~A~~l~~el~~~~~~ 83 (661)
T 2d7d_A 12 QPQGDQPKAIEKLVKGIQEGKKHQTLLGATGTGKTFTVSN-LIKEV-----NK-PTLVIAHNKTLAGQLYSEFKEFFPN 83 (661)
T ss_dssp CCCTTHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHH-HHHHH-----CC-CEEEECSSHHHHHHHHHHHHHHCTT
T ss_pred CCCCCCHHHHHHHHHHHhcCCCcEEEECcCCcHHHHHHHH-HHHHh-----CC-CEEEEECCHHHHHHHHHHHHHHcCC
Confidence 899999999888776555564 467889999999986432 22322 11 4999999999999999999999764
No 84
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=98.74 E-value=2.3e-08 Score=100.79 Aligned_cols=84 Identities=18% Similarity=0.196 Sum_probs=60.9
Q ss_pred HHHHHHHhC-CCCCccHhhHHHHHHhhCCCCCCCCEEEECCCCCchH--HHhHHHHHHHhhhcccCCceEEEEcccHHHH
Q 017196 38 RLKVALQNM-GISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKT--LSYALPIVQTLSNRAVRCLRALVVLPTRDLA 114 (375)
Q Consensus 38 ~i~~~l~~~-g~~~~~~~Q~~~~~~~~~~~~~~~~~ii~a~TGsGKT--l~~~l~il~~l~~~~~~~~~~lil~Pt~~L~ 114 (375)
.+...+... +-..-.+.|..|+..++ .++++++.+++||||| ++++++.+..+... .+.++++++||..++
T Consensus 136 ~~~~~l~~~~~~~~~~~~Q~~Ai~~~l----~~~~~vi~G~pGTGKTt~l~~ll~~l~~~~~~--~~~~vll~APTg~AA 209 (608)
T 1w36_D 136 LLAQTLDKLFPVSDEINWQKVAAAVAL----TRRISVISGGPGTGKTTTVAKLLAALIQMADG--ERCRIRLAAPTGKAA 209 (608)
T ss_dssp HHHHHHHTTCCCTTSCCHHHHHHHHHH----TBSEEEEECCTTSTHHHHHHHHHHHHHHTCSS--CCCCEEEEBSSHHHH
T ss_pred HHHHHHHHHhccCCCCHHHHHHHHHHh----cCCCEEEEeCCCCCHHHHHHHHHHHHHHhhhc--CCCeEEEEeCChhHH
Confidence 344555543 11223788999988777 5789999999999999 55666666655322 345799999999999
Q ss_pred HHHHHHHHHhccc
Q 017196 115 LQVKDVFAAIAPA 127 (375)
Q Consensus 115 ~Q~~~~~~~~~~~ 127 (375)
.++.+.+......
T Consensus 210 ~~L~e~~~~~~~~ 222 (608)
T 1w36_D 210 ARLTESLGKALRQ 222 (608)
T ss_dssp HHHHHHHTHHHHH
T ss_pred HHHHHHHHHHHhc
Confidence 9998887765543
No 85
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=98.51 E-value=1.3e-07 Score=80.88 Aligned_cols=87 Identities=14% Similarity=0.036 Sum_probs=59.6
Q ss_pred hhccccCCCeEEecCCccccCcccceeEEEeccCCCcHHHHHHHHHhcCCCeEEEEcCChhhHHHHHHHHHHhcCCcceE
Q 017196 283 LAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKI 362 (375)
Q Consensus 283 ~~~~~~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~k~lIF~~s~~~a~~l~~~L~~~g~~~~~~ 362 (375)
..+.++.+|..+.++... .....+.+.+..++...|...|.+++.... +++||||+++++|+.+++.|+..| +.+
T Consensus 7 ~~~~~~~~p~~i~v~~~~-~~~~~i~q~~~~~~~~~K~~~L~~~l~~~~-~~~lVF~~~~~~~~~l~~~L~~~g---~~~ 81 (191)
T 2p6n_A 7 HSSGVDLGTENLYFQSMG-AASLDVIQEVEYVKEEAKMVYLLECLQKTP-PPVLIFAEKKADVDAIHEYLLLKG---VEA 81 (191)
T ss_dssp ----------------------CCSEEEEEECCGGGHHHHHHHHHTTSC-SCEEEECSCHHHHHHHHHHHHHHT---CCE
T ss_pred ccccccCCCEEEEECCCC-CCCcCceEEEEEcChHHHHHHHHHHHHhCC-CCEEEEECCHHHHHHHHHHHHHcC---CcE
Confidence 346678889888887655 345688999999999999999999998754 589999999999999999999655 899
Q ss_pred Eecccccccccc
Q 017196 363 KEYSGLQRQSVR 374 (375)
Q Consensus 363 ~~lh~~~~~~~R 374 (375)
..+||+|++.+|
T Consensus 82 ~~lhg~~~~~~R 93 (191)
T 2p6n_A 82 VAIHGGKDQEER 93 (191)
T ss_dssp EEECTTSCHHHH
T ss_pred EEEeCCCCHHHH
Confidence 999999999887
No 86
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=98.49 E-value=1.8e-07 Score=78.70 Aligned_cols=68 Identities=22% Similarity=0.191 Sum_probs=61.3
Q ss_pred cccceeEEEeccCCCcHHHHHHHHHhcCCCeEEEEcCChhhHHHHHHHHHHhcCCcceEEecccccccccc
Q 017196 304 PERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVR 374 (375)
Q Consensus 304 ~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~k~lIF~~s~~~a~~l~~~L~~~g~~~~~~~~lh~~~~~~~R 374 (375)
+..+.+++..++...|...|.++++....+++||||+++++|+.+++.|...| +.+..+||+|++.+|
T Consensus 3 ~~~i~q~~~~~~~~~K~~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~---~~~~~~hg~~~~~~r 70 (172)
T 1t5i_A 3 LHGLQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQN---FPAIAIHRGMPQEER 70 (172)
T ss_dssp --CCEEEEEECCGGGHHHHHHHHHHHSCCSSEEEECSSHHHHHHHHHHHHHTT---CCEEEECTTSCHHHH
T ss_pred cCCeEEEEEECChHHHHHHHHHHHHhCCCCcEEEEECCHHHHHHHHHHHHhcC---CCEEEEECCCCHHHH
Confidence 35788999999999999999999999888899999999999999999999654 899999999999887
No 87
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=98.49 E-value=1.8e-07 Score=77.91 Aligned_cols=68 Identities=21% Similarity=0.280 Sum_probs=62.3
Q ss_pred cccceeEEEeccCCCcHHHHHHHHHhcCCCeEEEEcCChhhHHHHHHHHHHhcCCcceEEecccccccccc
Q 017196 304 PERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVR 374 (375)
Q Consensus 304 ~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~k~lIF~~s~~~a~~l~~~L~~~g~~~~~~~~lh~~~~~~~R 374 (375)
+.++++++..++...|...|.++++....+++||||+++++|+.+++.|...| +.+..+||+|++.+|
T Consensus 7 ~~~i~~~~~~~~~~~K~~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~---~~~~~~hg~~~~~~r 74 (163)
T 2hjv_A 7 TRNIEHAVIQVREENKFSLLKDVLMTENPDSCIIFCRTKEHVNQLTDELDDLG---YPCDKIHGGMIQEDR 74 (163)
T ss_dssp CCCEEEEEEECCGGGHHHHHHHHHHHHCCSSEEEECSSHHHHHHHHHHHHHTT---CCEEEECTTSCHHHH
T ss_pred cccceEEEEECChHHHHHHHHHHHHhcCCCcEEEEECCHHHHHHHHHHHHHcC---CcEEEEeCCCCHHHH
Confidence 45689999999999999999999998888899999999999999999999654 899999999999887
No 88
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=98.41 E-value=3.5e-07 Score=77.01 Aligned_cols=68 Identities=18% Similarity=0.243 Sum_probs=61.2
Q ss_pred cccceeEEEeccCCC-cHHHHHHHHHhcCCCeEEEEcCChhhHHHHHHHHHHhcCCcceEEecccccccccc
Q 017196 304 PERLESYKLICESKL-KPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVR 374 (375)
Q Consensus 304 ~~~i~~~~~~~~~~~-k~~~l~~ll~~~~~~k~lIF~~s~~~a~~l~~~L~~~g~~~~~~~~lh~~~~~~~R 374 (375)
+.+++++++.++... |...|.++++....+++||||+++++|+.++..|.. .|+.+..+||+|++.+|
T Consensus 5 ~~~i~q~~~~~~~~~~K~~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~---~~~~~~~~~g~~~~~~R 73 (175)
T 2rb4_A 5 LNNIRQYYVLCEHRKDKYQALCNIYGSITIGQAIIFCQTRRNAKWLTVEMIQ---DGHQVSLLSGELTVEQR 73 (175)
T ss_dssp BCCEEEEEEECSSHHHHHHHHHHHHTTSCCSEEEEECSCHHHHHHHHHHHHT---TTCCEEEECSSCCHHHH
T ss_pred cCCceEEEEEcCChHhHHHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHH---cCCcEEEEeCCCCHHHH
Confidence 467899999888765 999999999988888999999999999999999995 45899999999999887
No 89
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=98.40 E-value=4e-07 Score=75.86 Aligned_cols=67 Identities=18% Similarity=0.207 Sum_probs=59.2
Q ss_pred ccceeEEEeccCCC-cHHHHHHHHHhcCCCeEEEEcCChhhHHHHHHHHHHhcCCcceEEecccccccccc
Q 017196 305 ERLESYKLICESKL-KPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVR 374 (375)
Q Consensus 305 ~~i~~~~~~~~~~~-k~~~l~~ll~~~~~~k~lIF~~s~~~a~~l~~~L~~~g~~~~~~~~lh~~~~~~~R 374 (375)
.++++++..++... |...|.++++....+++||||+++++|+.++..|+..| +.+..+||+|++.+|
T Consensus 2 ~~i~~~~~~~~~~~~K~~~l~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~---~~~~~~~~~~~~~~r 69 (165)
T 1fuk_A 2 EGIKQFYVNVEEEEYKYECLTDLYDSISVTQAVIFCNTRRKVEELTTKLRNDK---FTVSAIYSDLPQQER 69 (165)
T ss_dssp --CEEEEEEEESGGGHHHHHHHHHHHTTCSCEEEEESSHHHHHHHHHHHHHTT---CCEEEECTTSCHHHH
T ss_pred CCcEEEEEECCcchhHHHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcC---CCEEEEECCCCHHHH
Confidence 35788888888777 99999999999888899999999999999999999654 889999999999887
No 90
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=98.37 E-value=6.2e-07 Score=76.29 Aligned_cols=70 Identities=21% Similarity=0.269 Sum_probs=55.3
Q ss_pred CcccceeEEEeccCCCcHHHHHHHHHhc-CCCeEEEEcCChhhHHHHHHHHHHhcCCcceEEeccccccccccC
Q 017196 303 LPERLESYKLICESKLKPLYLVALLQSL-GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRR 375 (375)
Q Consensus 303 ~~~~i~~~~~~~~~~~k~~~l~~ll~~~-~~~k~lIF~~s~~~a~~l~~~L~~~g~~~~~~~~lh~~~~~~~R~ 375 (375)
.+.++.+.+..++...|...|.++++.. ..+++||||+++++|+.+++.|+..| +.+..+||+|++.+|.
T Consensus 16 ~~~~i~q~~~~v~~~~K~~~L~~ll~~~~~~~k~lVF~~~~~~~~~l~~~L~~~g---~~~~~lhg~~~~~~r~ 86 (185)
T 2jgn_A 16 TSENITQKVVWVEESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEG---YACTSIHGDRSQRDRE 86 (185)
T ss_dssp CCTTEEEEEEECCGGGHHHHHHHHHHHC-CCSCEEEEESCHHHHHHHHHHHHHTT---CCEEEEC--------C
T ss_pred CCCCceEEEEEeCcHHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHHcC---CceEEEeCCCCHHHHH
Confidence 3567999999999999999999999987 56799999999999999999999654 8999999999999884
No 91
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=98.18 E-value=1.2e-05 Score=81.23 Aligned_cols=79 Identities=25% Similarity=0.249 Sum_probs=57.6
Q ss_pred CCCccHhhHHHHHHhhCCCCCCCCEEEECCCCCchHHHhHHHHHHHhhhcccCCceEEEEcccHHHHHHHHHHHHHhccc
Q 017196 48 ISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPA 127 (375)
Q Consensus 48 ~~~~~~~Q~~~~~~~~~~~~~~~~~ii~a~TGsGKTl~~~l~il~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~ 127 (375)
...+++.|.+|+..++. +...+|.||.|||||.+..- ++..+... .+.++++++||...++++...+.+.
T Consensus 178 ~~~ln~~Q~~av~~~l~----~~~~li~GppGTGKT~~~~~-~i~~l~~~--~~~~ilv~a~tn~A~~~l~~~l~~~--- 247 (624)
T 2gk6_A 178 LPDLNHSQVYAVKTVLQ----RPLSLIQGPPGTGKTVTSAT-IVYHLARQ--GNGPVLVCAPSNIAVDQLTEKIHQT--- 247 (624)
T ss_dssp SCCCCHHHHHHHHHHHT----CSEEEEECCTTSCHHHHHHH-HHHHHHTS--SSCCEEEEESSHHHHHHHHHHHHTT---
T ss_pred cCCCCHHHHHHHHHHhc----CCCeEEECCCCCCHHHHHHH-HHHHHHHc--CCCeEEEEeCcHHHHHHHHHHHHhc---
Confidence 34689999999988773 45689999999999987443 33444332 3347999999999999999888764
Q ss_pred cCceEEEeec
Q 017196 128 VGLSVGLAVG 137 (375)
Q Consensus 128 ~~~~v~~~~~ 137 (375)
++++..+.+
T Consensus 248 -~~~~~R~~~ 256 (624)
T 2gk6_A 248 -GLKVVRLCA 256 (624)
T ss_dssp -TCCEEECCC
T ss_pred -CCeEEeecc
Confidence 445555443
No 92
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=98.16 E-value=3.1e-06 Score=73.58 Aligned_cols=66 Identities=20% Similarity=0.194 Sum_probs=59.4
Q ss_pred cceeEEEeccCCCcHHHHHHHHHhcCCCeEEEEcCChhhHHHHHHHHHHhcCCcceEEecccccccccc
Q 017196 306 RLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVR 374 (375)
Q Consensus 306 ~i~~~~~~~~~~~k~~~l~~ll~~~~~~k~lIF~~s~~~a~~l~~~L~~~g~~~~~~~~lh~~~~~~~R 374 (375)
.+.+..+.++...|...|.++++...++++||||+++++++.+++.|...| +.+..+||+|++.+|
T Consensus 5 ~~~~~~~~~~~~~k~~~l~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~---~~~~~lhg~~~~~~r 70 (212)
T 3eaq_A 5 TYEEEAVPAPVRGRLEVLSDLLYVASPDRAMVFTRTKAETEEIAQGLLRLG---HPAQALHGDLSQGER 70 (212)
T ss_dssp CBCCEEEECCTTSHHHHHHHHHHHHCCSCEEEECSSHHHHHHHHHHHHHHT---CCEEEECSSSCHHHH
T ss_pred ceeeeEEeCCHHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHcC---CCEEEEECCCCHHHH
Confidence 456677778889999999999998888899999999999999999999655 899999999999887
No 93
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=98.14 E-value=3.7e-06 Score=77.05 Aligned_cols=67 Identities=19% Similarity=0.169 Sum_probs=60.6
Q ss_pred cceeEEEeccCCCcHHHHHHHHHhcCCCeEEEEcCChhhHHHHHHHHHHhcCCcceEEeccccccccccC
Q 017196 306 RLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRR 375 (375)
Q Consensus 306 ~i~~~~~~~~~~~k~~~l~~ll~~~~~~k~lIF~~s~~~a~~l~~~L~~~g~~~~~~~~lh~~~~~~~R~ 375 (375)
.+.|+++.++...|.+.|.++++...++++||||+++++++.+++.|.. .++.+..+||+|++.+|+
T Consensus 2 ~v~~~~i~~~~~~K~~~L~~ll~~~~~~~~LVF~~t~~~~~~l~~~L~~---~g~~~~~lhg~l~~~~r~ 68 (300)
T 3i32_A 2 TYEEEAVPAPVRGRLEVLSDLLYVASPDRAMVFTRTKAETEEIAQGLLR---LGHPAQALHGDMSQGERE 68 (300)
T ss_dssp CSEEEEEECCSSSHHHHHHHHHHHHCCSSEEEECSSHHHHHHHHHHHHT---TTCCEEEECSCCCTHHHH
T ss_pred ceEEEEEECCHHHHHHHHHHHHHhcCCCCEEEEECCHHHHHHHHHHHHh---CCCCEEEEeCCCCHHHHH
Confidence 3678888999999999999999988888999999999999999999994 459999999999998873
No 94
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=98.11 E-value=9.1e-06 Score=82.56 Aligned_cols=79 Identities=18% Similarity=0.121 Sum_probs=57.0
Q ss_pred CCccHhhHHHHHHhhCCCCCCCCEEEECCCCCchHHHhHHHHHHHhhhcccCCceEEEEcccHHHHHHHHHHHHHhcccc
Q 017196 49 SSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAV 128 (375)
Q Consensus 49 ~~~~~~Q~~~~~~~~~~~~~~~~~ii~a~TGsGKTl~~~l~il~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~ 128 (375)
..+++-|.+|+..++. ...-.+|.||.|||||.+.+-.+.+.+.. +.++|+++||..-++++...+...
T Consensus 188 ~~LN~~Q~~AV~~al~---~~~~~lI~GPPGTGKT~ti~~~I~~l~~~----~~~ILv~a~TN~AvD~i~erL~~~---- 256 (646)
T 4b3f_X 188 TCLDTSQKEAVLFALS---QKELAIIHGPPGTGKTTTVVEIILQAVKQ----GLKVLCCAPSNIAVDNLVERLALC---- 256 (646)
T ss_dssp TTCCHHHHHHHHHHHH---CSSEEEEECCTTSCHHHHHHHHHHHHHHT----TCCEEEEESSHHHHHHHHHHHHHT----
T ss_pred CCCCHHHHHHHHHHhc---CCCceEEECCCCCCHHHHHHHHHHHHHhC----CCeEEEEcCchHHHHHHHHHHHhc----
Confidence 3578999999988773 22346899999999998755444444433 347999999999999998888654
Q ss_pred CceEEEeecC
Q 017196 129 GLSVGLAVGQ 138 (375)
Q Consensus 129 ~~~v~~~~~~ 138 (375)
+.++..+...
T Consensus 257 ~~~ilRlG~~ 266 (646)
T 4b3f_X 257 KQRILRLGHP 266 (646)
T ss_dssp TCCEEECSCC
T ss_pred CCceEEecch
Confidence 4555555433
No 95
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=97.39 E-value=3.7e-07 Score=76.47 Aligned_cols=67 Identities=24% Similarity=0.292 Sum_probs=59.2
Q ss_pred cceeEEEeccC-CCcHHHHHHHHHhcCCCeEEEEcCChhhHHHHHHHHHHhcCCcceEEeccccccccccC
Q 017196 306 RLESYKLICES-KLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRR 375 (375)
Q Consensus 306 ~i~~~~~~~~~-~~k~~~l~~ll~~~~~~k~lIF~~s~~~a~~l~~~L~~~g~~~~~~~~lh~~~~~~~R~ 375 (375)
++.+.+..++. ..|...|.++++....+++||||+++++|+.+++.|+.. ++.+..+||+|++.+|.
T Consensus 3 ~i~~~~~~~~~~~~k~~~l~~ll~~~~~~~~iVF~~~~~~~~~l~~~L~~~---~~~~~~~~g~~~~~~r~ 70 (170)
T 2yjt_D 3 KIHQWYYRADDLEHKTALLVHLLKQPEATRSIVFVRKRERVHELANWLREA---GINNCYLEGEMVQGKRN 70 (170)
Confidence 56777777887 889999999999877789999999999999999999954 58999999999998874
No 96
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=98.03 E-value=2.9e-05 Score=80.46 Aligned_cols=78 Identities=26% Similarity=0.246 Sum_probs=56.5
Q ss_pred CCCccHhhHHHHHHhhCCCCCCCCEEEECCCCCchHHHhHHHHHHHhhhcccCCceEEEEcccHHHHHHHHHHHHHhccc
Q 017196 48 ISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPA 127 (375)
Q Consensus 48 ~~~~~~~Q~~~~~~~~~~~~~~~~~ii~a~TGsGKTl~~~l~il~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~ 127 (375)
+..+++.|.+|+..++ .+...+|.||.|||||.+..- ++..+... .+.++++++||..-++++...+.+.
T Consensus 358 ~~~Ln~~Q~~Av~~~l----~~~~~lI~GppGTGKT~~i~~-~i~~l~~~--~~~~ILv~a~tn~A~d~l~~rL~~~--- 427 (802)
T 2xzl_A 358 FAQLNSSQSNAVSHVL----QRPLSLIQGPPGTGKTVTSAT-IVYHLSKI--HKDRILVCAPSNVAVDHLAAKLRDL--- 427 (802)
T ss_dssp SCCCCHHHHHHHHHHT----TCSEEEEECSTTSSHHHHHHH-HHHHHHHH--HCCCEEEEESSHHHHHHHHHHHHHT---
T ss_pred cccCCHHHHHHHHHHh----cCCCEEEECCCCCCHHHHHHH-HHHHHHhC--CCCeEEEEcCcHHHHHHHHHHHHhh---
Confidence 3467899999998776 345689999999999987543 33333322 2247999999999999999988765
Q ss_pred cCceEEEee
Q 017196 128 VGLSVGLAV 136 (375)
Q Consensus 128 ~~~~v~~~~ 136 (375)
++++..+.
T Consensus 428 -g~~ilR~g 435 (802)
T 2xzl_A 428 -GLKVVRLT 435 (802)
T ss_dssp -TCCEEECC
T ss_pred -CccEEeec
Confidence 34454443
No 97
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=97.99 E-value=4.2e-05 Score=79.21 Aligned_cols=78 Identities=26% Similarity=0.256 Sum_probs=56.9
Q ss_pred CCCccHhhHHHHHHhhCCCCCCCCEEEECCCCCchHHHhHHHHHHHhhhcccCCceEEEEcccHHHHHHHHHHHHHhccc
Q 017196 48 ISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPA 127 (375)
Q Consensus 48 ~~~~~~~Q~~~~~~~~~~~~~~~~~ii~a~TGsGKTl~~~l~il~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~ 127 (375)
...+++.|.+|+..++. +...+|.||.|||||.+.. .++..+... .+.++++++||..-++++...+.+.
T Consensus 354 ~~~Ln~~Q~~Av~~~l~----~~~~lI~GppGTGKT~ti~-~~i~~l~~~--~~~~ilv~a~tn~A~~~l~~~l~~~--- 423 (800)
T 2wjy_A 354 LPDLNHSQVYAVKTVLQ----RPLSLIQGPPGTGKTVTSA-TIVYHLARQ--GNGPVLVCAPSNIAVDQLTEKIHQT--- 423 (800)
T ss_dssp SCCCCHHHHHHHHHHHT----SSEEEEECCTTSCHHHHHH-HHHHHHHTT--CSSCEEEEESSHHHHHHHHHHHHTT---
T ss_pred ccCCCHHHHHHHHHhcc----CCeEEEEcCCCCCHHHHHH-HHHHHHHHc--CCCcEEEEcCcHHHHHHHHHHHHHh---
Confidence 34678999999988763 4568999999999998643 344444432 3347999999999999998888754
Q ss_pred cCceEEEee
Q 017196 128 VGLSVGLAV 136 (375)
Q Consensus 128 ~~~~v~~~~ 136 (375)
++++..+.
T Consensus 424 -g~~vvRlg 431 (800)
T 2wjy_A 424 -GLKVVRLC 431 (800)
T ss_dssp -TCCEEECC
T ss_pred -CcceEeec
Confidence 44555443
No 98
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=97.99 E-value=1e-05 Score=78.73 Aligned_cols=75 Identities=17% Similarity=0.194 Sum_probs=52.6
Q ss_pred HhCCCCCccHhhHHHHHHhhCCCCCCC-CEEEECCCCCchHHHhHHHHHHHhhhcccCCceEEEEcccHHHHHHHHHHH
Q 017196 44 QNMGISSLFPVQVAVWQETIGPGLFER-DLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVF 121 (375)
Q Consensus 44 ~~~g~~~~~~~Q~~~~~~~~~~~~~~~-~~ii~a~TGsGKTl~~~l~il~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~~ 121 (375)
..+.+..+++-|.+|+..++..+..+. .++|.|+.|||||... ..++..+..... .++++++||...+..+...+
T Consensus 19 ~p~~~~~Ln~~Q~~av~~~~~~i~~~~~~~li~G~aGTGKT~ll-~~~~~~l~~~~~--~~il~~a~T~~Aa~~l~~~~ 94 (459)
T 3upu_A 19 SHMTFDDLTEGQKNAFNIVMKAIKEKKHHVTINGPAGTGATTLT-KFIIEALISTGE--TGIILAAPTHAAKKILSKLS 94 (459)
T ss_dssp --CCSSCCCHHHHHHHHHHHHHHHSSSCEEEEECCTTSCHHHHH-HHHHHHHHHTTC--CCEEEEESSHHHHHHHHHHH
T ss_pred CCCccccCCHHHHHHHHHHHHHHhcCCCEEEEEeCCCCCHHHHH-HHHHHHHHhcCC--ceEEEecCcHHHHHHHHhhh
Confidence 446788999999999987754332333 8999999999999753 344444444321 36999999998877666544
No 99
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=97.82 E-value=7.2e-05 Score=74.68 Aligned_cols=64 Identities=19% Similarity=0.189 Sum_probs=47.8
Q ss_pred CccHhhHHHHHHhhCCCCCCCCEEEECCCCCchHHHhHHHHHHHhhhcccCCceEEEEcccHHHHHHHHHHH
Q 017196 50 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVF 121 (375)
Q Consensus 50 ~~~~~Q~~~~~~~~~~~~~~~~~ii~a~TGsGKTl~~~l~il~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~~ 121 (375)
.+++.|.+|+..++ .++.++|.++.|||||... ..++..+.. .+.++++++||...+..+....
T Consensus 189 ~L~~~Q~~Av~~~~----~~~~~~I~G~pGTGKTt~i-~~l~~~l~~---~g~~Vl~~ApT~~Aa~~L~e~~ 252 (574)
T 3e1s_A 189 GLSEEQASVLDQLA----GHRLVVLTGGPGTGKSTTT-KAVADLAES---LGLEVGLCAPTGKAARRLGEVT 252 (574)
T ss_dssp TCCHHHHHHHHHHT----TCSEEEEECCTTSCHHHHH-HHHHHHHHH---TTCCEEEEESSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH----hCCEEEEEcCCCCCHHHHH-HHHHHHHHh---cCCeEEEecCcHHHHHHhHhhh
Confidence 78999999988776 4678999999999999753 334444433 2347999999999887665543
No 100
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A*
Probab=97.15 E-value=0.012 Score=55.44 Aligned_cols=71 Identities=14% Similarity=0.016 Sum_probs=53.8
Q ss_pred CccHhhHHHHHHhhCCCCCCCCEEEECCCCCchHHHhHHHHHHHhhhcccCCceEEEEcccHHHHHHHHHHHHHhcc
Q 017196 50 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAP 126 (375)
Q Consensus 50 ~~~~~Q~~~~~~~~~~~~~~~~~ii~a~TGsGKTl~~~l~il~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~ 126 (375)
.|.|+|...+..+. ..+.+++..+-+.|||...+..++..+... ++..++++.|+.+-|..+.+.++.+..
T Consensus 163 ~L~p~Qk~il~~l~----~~R~~vi~~sRq~GKT~l~a~~~l~~a~~~--~g~~v~~vA~t~~qA~~vf~~i~~mi~ 233 (385)
T 2o0j_A 163 QLRDYQRDMLKIMS----SKRMTVCNLSRQLGKTTVVAIFLAHFVCFN--KDKAVGILAHKGSMSAEVLDRTKQAIE 233 (385)
T ss_dssp CCCHHHHHHHHHHH----HSSEEEEEECSSSCHHHHHHHHHHHHHHSS--SSCEEEEEESSHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHhhc----cCcEEEEEEcCcCChhHHHHHHHHHHHHhC--CCCeEEEEeCCHHHHHHHHHHHHHHHH
Confidence 68999999876543 235689999999999997666555443332 445799999999999888888877654
No 101
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=97.13 E-value=0.0012 Score=66.84 Aligned_cols=82 Identities=21% Similarity=0.131 Sum_probs=60.0
Q ss_pred CCccHhhHHHHHHhhCCCCCCCCEEEECCCCCchHHHhHHHHHHHhhhcccCCceEEEEcccHHHHHHHHHHHHHhccc-
Q 017196 49 SSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPA- 127 (375)
Q Consensus 49 ~~~~~~Q~~~~~~~~~~~~~~~~~ii~a~TGsGKTl~~~l~il~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~- 127 (375)
..+++-|.+|+. ..+..++|.|+.|||||.+.+--+...+.....+..+++++++|+..+.++.+.+.+..+.
T Consensus 8 ~~Ln~~Q~~av~------~~~~~~lV~a~aGsGKT~~l~~ri~~l~~~~~~~~~~iL~ltft~~aa~e~~~rl~~~~~~~ 81 (647)
T 3lfu_A 8 DSLNDKQREAVA------APRSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMAVTFTNKAAAEMRHRIGQLMGTS 81 (647)
T ss_dssp TTCCHHHHHHHT------CCSSCEEEEECTTSCHHHHHHHHHHHHHHTSCCCGGGEEEEESSHHHHHHHHHHHHHHHCSC
T ss_pred hcCCHHHHHHHh------CCCCCEEEEECCCCCHHHHHHHHHHHHHHhCCCChhhEEEEeccHHHHHHHHHHHHHHhccc
Confidence 478999999853 1356799999999999988655555555554334458999999999999999999877542
Q ss_pred -cCceEEEee
Q 017196 128 -VGLSVGLAV 136 (375)
Q Consensus 128 -~~~~v~~~~ 136 (375)
.++.+..++
T Consensus 82 ~~~~~v~Tfh 91 (647)
T 3lfu_A 82 QGGMWVGTFH 91 (647)
T ss_dssp CTTCEEEEHH
T ss_pred cCCcEEEcHH
Confidence 244444443
No 102
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A*
Probab=97.12 E-value=0.0069 Score=60.61 Aligned_cols=73 Identities=14% Similarity=0.018 Sum_probs=55.7
Q ss_pred CccHhhHHHHHHhhCCCCCCCCEEEECCCCCchHHHhHHHHHHHhhhcccCCceEEEEcccHHHHHHHHHHHHHhcccc
Q 017196 50 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAV 128 (375)
Q Consensus 50 ~~~~~Q~~~~~~~~~~~~~~~~~ii~a~TGsGKTl~~~l~il~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~ 128 (375)
.|+|+|...+..+- ..+.+++..+-|+|||...+..++..+... ++.+++++.|+.+.|.++...++.+....
T Consensus 163 ~l~p~Q~~i~~~l~----~~r~~~i~~~Rq~GKS~~~a~~~l~~~~~~--~~~~i~~va~t~~qA~~~~~~i~~~i~~~ 235 (592)
T 3cpe_A 163 QLRDYQRDMLKIMS----SKRMTVCNLSRQLGKTTVVAIFLAHFVCFN--KDKAVGILAHKGSMSAEVLDRTKQAIELL 235 (592)
T ss_dssp CCCHHHHHHHHHHH----HCSEEEEEECSSSCHHHHHHHHHHHHHHTS--SSCEEEEEESSHHHHHHHHHHHHHHHTTS
T ss_pred cCCHHHHHHHHhhc----cccEEEEEEcCccChHHHHHHHHHHHHHhC--CCCeEEEEECCHHHHHHHHHHHHHHHHhC
Confidence 57999999876542 356789999999999998665555544443 34579999999999999888888776543
No 103
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=96.93 E-value=0.0025 Score=60.90 Aligned_cols=45 Identities=20% Similarity=0.318 Sum_probs=33.4
Q ss_pred CCEEEECCCCCchHHHhHHHHHHHhhhcccCCceEEEEcccHHHHHHHHHHHHH
Q 017196 70 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAA 123 (375)
Q Consensus 70 ~~~ii~a~TGsGKTl~~~l~il~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~ 123 (375)
+-.++.|+-|+|||... .+.+.. .+.+|++||+++++++.+.+.+
T Consensus 162 ~v~~I~G~aGsGKTt~I----~~~~~~-----~~~lVlTpT~~aa~~l~~kl~~ 206 (446)
T 3vkw_A 162 KVVLVDGVPGCGKTKEI----LSRVNF-----EEDLILVPGRQAAEMIRRRANA 206 (446)
T ss_dssp EEEEEEECTTSCHHHHH----HHHCCT-----TTCEEEESCHHHHHHHHHHHTT
T ss_pred cEEEEEcCCCCCHHHHH----HHHhcc-----CCeEEEeCCHHHHHHHHHHhhh
Confidence 34688899999999752 222221 2479999999999998888753
No 104
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=96.87 E-value=0.0023 Score=65.07 Aligned_cols=82 Identities=18% Similarity=0.092 Sum_probs=60.6
Q ss_pred CccHhhHHHHHHhhCCCCCCCCEEEECCCCCchHHHhHHHHHHHhhhcccCCceEEEEcccHHHHHHHHHHHHHhcccc-
Q 017196 50 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAV- 128 (375)
Q Consensus 50 ~~~~~Q~~~~~~~~~~~~~~~~~ii~a~TGsGKTl~~~l~il~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~- 128 (375)
.+++-|.+++.. .+..++|.|+-|||||.+.+--+...+........++++|+.|+..+.++.+.+.......
T Consensus 2 ~L~~~Q~~av~~------~~~~~lV~AgaGSGKT~~l~~ri~~ll~~~~~~~~~IL~lTfT~~Aa~em~~Rl~~~l~~~~ 75 (673)
T 1uaa_A 2 RLNPGQQQAVEF------VTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKERVGQTLGRKE 75 (673)
T ss_dssp CCCHHHHHHHHC------CSSEEEECCCTTSCHHHHHHHHHHHHHHHHCCCGGGEEEEESSHHHHHHHHHHHHHHSCTTT
T ss_pred CCCHHHHHHHhC------CCCCEEEEeCCCCChHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHHcCccc
Confidence 478999998642 2567999999999999976555555555533344579999999999999999998775432
Q ss_pred --CceEEEeec
Q 017196 129 --GLSVGLAVG 137 (375)
Q Consensus 129 --~~~v~~~~~ 137 (375)
++.+..+++
T Consensus 76 ~~~~~v~Tfhs 86 (673)
T 1uaa_A 76 ARGLMISTFHT 86 (673)
T ss_dssp TTTSEEEEHHH
T ss_pred ccCCEEEeHHH
Confidence 456655544
No 105
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=96.82 E-value=0.0077 Score=50.09 Aligned_cols=19 Identities=26% Similarity=0.230 Sum_probs=16.3
Q ss_pred CCCCEEEECCCCCchHHHh
Q 017196 68 FERDLCINSPTGSGKTLSY 86 (375)
Q Consensus 68 ~~~~~ii~a~TGsGKTl~~ 86 (375)
.|+.+++.+|+|+|||..+
T Consensus 37 ~g~~~~l~G~~G~GKTtL~ 55 (180)
T 3ec2_A 37 EGKGLTFVGSPGVGKTHLA 55 (180)
T ss_dssp GCCEEEECCSSSSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4678999999999999753
No 106
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=96.76 E-value=0.0054 Score=56.72 Aligned_cols=45 Identities=16% Similarity=0.166 Sum_probs=31.8
Q ss_pred ccHhhHHHHHHhhCCCCCCC---CEEEECCCCCchHHHhHHHHHHHhhh
Q 017196 51 LFPVQVAVWQETIGPGLFER---DLCINSPTGSGKTLSYALPIVQTLSN 96 (375)
Q Consensus 51 ~~~~Q~~~~~~~~~~~~~~~---~~ii~a~TGsGKTl~~~l~il~~l~~ 96 (375)
++|+|.+++..+...+.+|+ .+++.||.|+|||..+. .+...+..
T Consensus 3 ~~pw~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~-~la~~l~~ 50 (334)
T 1a5t_A 3 WYPWLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIY-ALSRYLLC 50 (334)
T ss_dssp CCGGGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHH-HHHHHHTC
T ss_pred CCCchHHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHH-HHHHHHhC
Confidence 47899998887765544553 48999999999997643 34444443
No 107
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=96.69 E-value=0.0045 Score=63.54 Aligned_cols=83 Identities=18% Similarity=0.135 Sum_probs=61.0
Q ss_pred CCccHhhHHHHHHhhCCCCCCCCEEEECCCCCchHHHhHHHHHHHhhhcccCCceEEEEcccHHHHHHHHHHHHHhccc-
Q 017196 49 SSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPA- 127 (375)
Q Consensus 49 ~~~~~~Q~~~~~~~~~~~~~~~~~ii~a~TGsGKTl~~~l~il~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~- 127 (375)
..+++-|.+|+.. .+..++|.|+-|||||.+.+--+...+........++++++.|+..|.++.+.+..+.+.
T Consensus 10 ~~Ln~~Q~~av~~------~~g~~lV~AgAGSGKT~vL~~ri~~ll~~~~~~p~~IL~vTFTnkAA~Em~~Rl~~~l~~~ 83 (724)
T 1pjr_A 10 AHLNKEQQEAVRT------TEGPLLIMAGAGSGKTRVLTHRIAYLMAEKHVAPWNILAITFTNKAAREMRERVQSLLGGA 83 (724)
T ss_dssp TTSCHHHHHHHHC------CSSCEEEEECTTSCHHHHHHHHHHHHHHTTCCCGGGEEEEESSHHHHHHHHHHHHHHHGGG
T ss_pred hhCCHHHHHHHhC------CCCCEEEEEcCCCCHHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHHhccc
Confidence 4689999998642 246799999999999998655555555543334457999999999999999998876432
Q ss_pred -cCceEEEeec
Q 017196 128 -VGLSVGLAVG 137 (375)
Q Consensus 128 -~~~~v~~~~~ 137 (375)
.++.+..+++
T Consensus 84 ~~~~~v~Tfhs 94 (724)
T 1pjr_A 84 AEDVWISTFHS 94 (724)
T ss_dssp GTTSEEEEHHH
T ss_pred ccCcEEeeHHH
Confidence 2455655543
No 108
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=96.60 E-value=0.0015 Score=58.75 Aligned_cols=58 Identities=14% Similarity=0.179 Sum_probs=50.0
Q ss_pred cCCCcHHHHHHHHHhc--CCCeEEEEcCChhhHHHHHHHHHHhcCCcceEEecccccccccc
Q 017196 315 ESKLKPLYLVALLQSL--GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVR 374 (375)
Q Consensus 315 ~~~~k~~~l~~ll~~~--~~~k~lIF~~s~~~a~~l~~~L~~~g~~~~~~~~lh~~~~~~~R 374 (375)
....|...+.+++... .++++||||+++..++.+...|... .|+.+..+||+++.++|
T Consensus 93 ~~s~K~~~L~~ll~~~~~~~~kvlIFs~~~~~~~~l~~~L~~~--~g~~~~~l~G~~~~~~R 152 (271)
T 1z5z_A 93 RRSGKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKE--LNTEVPFLYGELSKKER 152 (271)
T ss_dssp TTCHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHH--HCSCCCEECTTSCHHHH
T ss_pred ccCHHHHHHHHHHHHHHhCCCeEEEEeccHHHHHHHHHHHHHh--cCCcEEEEECCCCHHHH
Confidence 4567889999999876 6789999999999999999999863 13889999999998887
No 109
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=96.55 E-value=0.0096 Score=54.58 Aligned_cols=28 Identities=14% Similarity=0.075 Sum_probs=20.7
Q ss_pred CCCCEEEECCCCCchHHHhHHHHHHHhhh
Q 017196 68 FERDLCINSPTGSGKTLSYALPIVQTLSN 96 (375)
Q Consensus 68 ~~~~~ii~a~TGsGKTl~~~l~il~~l~~ 96 (375)
.+.+++|.+|+|||||.+. -.++..+..
T Consensus 44 ~~~~lli~GpPGTGKT~~v-~~v~~~L~~ 71 (318)
T 3te6_A 44 QNKLFYITNADDSTKFQLV-NDVMDELIT 71 (318)
T ss_dssp CCCEEEEECCCSHHHHHHH-HHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHH-HHHHHHHHH
Confidence 4568999999999999864 445555543
No 110
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=96.55 E-value=0.0057 Score=51.78 Aligned_cols=40 Identities=18% Similarity=0.083 Sum_probs=27.3
Q ss_pred CCCCEEEECCCCCchHHHhHHHHHHHhhhcccCCceEEEEcccH
Q 017196 68 FERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTR 111 (375)
Q Consensus 68 ~~~~~ii~a~TGsGKTl~~~l~il~~l~~~~~~~~~~lil~Pt~ 111 (375)
.|+=.++.+++|+|||.++ +-++.+... .+.+++++.|..
T Consensus 7 ~g~i~v~~G~mgsGKTT~l-l~~a~r~~~---~g~kV~v~k~~~ 46 (191)
T 1xx6_A 7 HGWVEVIVGPMYSGKSEEL-IRRIRRAKI---AKQKIQVFKPEI 46 (191)
T ss_dssp CCEEEEEECSTTSSHHHHH-HHHHHHHHH---TTCCEEEEEEC-
T ss_pred CCEEEEEECCCCCcHHHHH-HHHHHHHHH---CCCEEEEEEecc
Confidence 4566788899999999764 444444432 334799999885
No 111
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=96.37 E-value=0.041 Score=50.33 Aligned_cols=19 Identities=26% Similarity=0.364 Sum_probs=16.0
Q ss_pred CCCCEEEECCCCCchHHHh
Q 017196 68 FERDLCINSPTGSGKTLSY 86 (375)
Q Consensus 68 ~~~~~ii~a~TGsGKTl~~ 86 (375)
.+..+++.+|+|+|||..+
T Consensus 36 ~~~~lll~G~~GtGKT~la 54 (324)
T 1l8q_A 36 LYNPIFIYGSVGTGKTHLL 54 (324)
T ss_dssp SCSSEEEECSSSSSHHHHH
T ss_pred CCCeEEEECCCCCcHHHHH
Confidence 3468999999999999754
No 112
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=96.37 E-value=0.00089 Score=56.47 Aligned_cols=40 Identities=28% Similarity=0.268 Sum_probs=25.8
Q ss_pred CCCEEEECCCCCchHHHhHHHHHHHhhhcccCCceEEEEcccHH
Q 017196 69 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRD 112 (375)
Q Consensus 69 ~~~~ii~a~TGsGKTl~~~l~il~~l~~~~~~~~~~lil~Pt~~ 112 (375)
|+-.++.+++|+|||..+ +-++.+.... +.+++++.|...
T Consensus 3 g~i~vi~G~~gsGKTT~l-l~~~~~~~~~---g~~v~~~~~~~d 42 (184)
T 2orw_A 3 GKLTVITGPMYSGKTTEL-LSFVEIYKLG---KKKVAVFKPKID 42 (184)
T ss_dssp CCEEEEEESTTSSHHHHH-HHHHHHHHHT---TCEEEEEEEC--
T ss_pred cEEEEEECCCCCCHHHHH-HHHHHHHHHC---CCeEEEEeeccc
Confidence 555788999999999864 3344433322 236888888853
No 113
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.29 E-value=0.003 Score=54.91 Aligned_cols=40 Identities=23% Similarity=0.207 Sum_probs=27.1
Q ss_pred CCCCEEEECCCCCchHHHhHHHHHHHhhhcccCCceEEEEcccH
Q 017196 68 FERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTR 111 (375)
Q Consensus 68 ~~~~~ii~a~TGsGKTl~~~l~il~~l~~~~~~~~~~lil~Pt~ 111 (375)
.|.-+++.+++|+|||.++ +-++.+.... +.+++++.|..
T Consensus 11 ~G~i~litG~mGsGKTT~l-l~~~~r~~~~---g~kVli~~~~~ 50 (223)
T 2b8t_A 11 IGWIEFITGPMFAGKTAEL-IRRLHRLEYA---DVKYLVFKPKI 50 (223)
T ss_dssp CCEEEEEECSTTSCHHHHH-HHHHHHHHHT---TCCEEEEEECC
T ss_pred CcEEEEEECCCCCcHHHHH-HHHHHHHHhc---CCEEEEEEecc
Confidence 4566788899999999764 4444444332 33688887765
No 114
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=96.25 E-value=0.0056 Score=52.61 Aligned_cols=41 Identities=22% Similarity=0.064 Sum_probs=26.0
Q ss_pred CCCCEEEECCCCCchHHHhHHHHHHHhhhcccCCceEEEEcccHH
Q 017196 68 FERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRD 112 (375)
Q Consensus 68 ~~~~~ii~a~TGsGKTl~~~l~il~~l~~~~~~~~~~lil~Pt~~ 112 (375)
.|+=.++.++.|+|||.++ +-.+.+... .+.+++++.|...
T Consensus 27 ~G~l~vitG~MgsGKTT~l-L~~a~r~~~---~g~kVli~k~~~d 67 (214)
T 2j9r_A 27 NGWIEVICGSMFSGKSEEL-IRRVRRTQF---AKQHAIVFKPCID 67 (214)
T ss_dssp SCEEEEEECSTTSCHHHHH-HHHHHHHHH---TTCCEEEEECC--
T ss_pred CCEEEEEECCCCCcHHHHH-HHHHHHHHH---CCCEEEEEEeccC
Confidence 3444567899999999764 444444432 3347999998864
No 115
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=96.23 E-value=0.054 Score=45.79 Aligned_cols=17 Identities=35% Similarity=0.599 Sum_probs=14.4
Q ss_pred CCEEEECCCCCchHHHh
Q 017196 70 RDLCINSPTGSGKTLSY 86 (375)
Q Consensus 70 ~~~ii~a~TGsGKTl~~ 86 (375)
..+++.+|+|+|||..+
T Consensus 39 ~~~ll~G~~G~GKT~l~ 55 (226)
T 2chg_A 39 PHLLFSGPPGTGKTATA 55 (226)
T ss_dssp CCEEEECSTTSSHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 35999999999999753
No 116
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=96.13 E-value=0.0044 Score=53.23 Aligned_cols=41 Identities=20% Similarity=0.127 Sum_probs=26.8
Q ss_pred CCCCEEEECCCCCchHHHhHHHHHHHhhhcccCCceEEEEcccHH
Q 017196 68 FERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRD 112 (375)
Q Consensus 68 ~~~~~ii~a~TGsGKTl~~~l~il~~l~~~~~~~~~~lil~Pt~~ 112 (375)
.|.=.++.++.|+|||.. ++..+.+.... +.+++++.|...
T Consensus 27 ~G~I~vitG~M~sGKTT~-Llr~~~r~~~~---g~kvli~kp~~D 67 (219)
T 3e2i_A 27 SGWIECITGSMFSGKSEE-LIRRLRRGIYA---KQKVVVFKPAID 67 (219)
T ss_dssp CCEEEEEEECTTSCHHHH-HHHHHHHHHHT---TCCEEEEEEC--
T ss_pred CceEEEEECCCCCCHHHH-HHHHHHHHHHc---CCceEEEEeccC
Confidence 455568889999999975 34444444332 346899999764
No 117
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=95.98 E-value=0.018 Score=57.90 Aligned_cols=60 Identities=17% Similarity=0.184 Sum_probs=42.0
Q ss_pred CccHhhHHHHHHhhCCCCCCCCEEEECCCCCchHHHhHHHHHHHhhhcccCCceEEEEcccHHHHHHHH
Q 017196 50 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVK 118 (375)
Q Consensus 50 ~~~~~Q~~~~~~~~~~~~~~~~~ii~a~TGsGKTl~~~l~il~~l~~~~~~~~~~lil~Pt~~L~~Q~~ 118 (375)
.++.-|.+++..++... .+ ..++.|+-|.|||.+.-+.+ ..+. . .++|.+|+.+-+..+.
T Consensus 175 ~~T~dQ~~al~~~~~~~-~~-~~vlta~RGRGKSa~lG~~~-a~~~-~-----~~~vtAP~~~a~~~l~ 234 (671)
T 2zpa_A 175 APQPEQQQLLKQLMTMP-PG-VAAVTAARGRGKSALAGQLI-SRIA-G-----RAIVTAPAKASTDVLA 234 (671)
T ss_dssp SCCHHHHHHHHHHTTCC-SE-EEEEEECTTSSHHHHHHHHH-HHSS-S-----CEEEECSSCCSCHHHH
T ss_pred CCCHHHHHHHHHHHHhh-hC-eEEEecCCCCCHHHHHHHHH-HHHH-h-----CcEEECCCHHHHHHHH
Confidence 68899999998887643 33 47899999999996543333 3332 1 3699999988555433
No 118
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=95.88 E-value=0.018 Score=48.65 Aligned_cols=38 Identities=21% Similarity=0.172 Sum_probs=25.4
Q ss_pred CCCEEEECCCCCchHHHhHHHHHHHhhhcccCCceEEEEccc
Q 017196 69 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPT 110 (375)
Q Consensus 69 ~~~~ii~a~TGsGKTl~~~l~il~~l~~~~~~~~~~lil~Pt 110 (375)
|+=.++.+|+|+|||.. ++-.+.+... .+.+++++.|.
T Consensus 20 g~l~fiyG~MgsGKTt~-Ll~~i~n~~~---~~~kvl~~kp~ 57 (195)
T 1w4r_A 20 GQIQVILGPMFSGKSTE-LMRRVRRFQI---AQYKCLVIKYA 57 (195)
T ss_dssp CEEEEEEECTTSCHHHH-HHHHHHHHHH---TTCCEEEEEET
T ss_pred eEEEEEECCCCCcHHHH-HHHHHHHHHH---cCCeEEEEccc
Confidence 55578889999999954 3433333333 23479999887
No 119
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=95.87 E-value=0.052 Score=49.54 Aligned_cols=29 Identities=24% Similarity=0.206 Sum_probs=18.4
Q ss_pred CCccEEEEecchhhhhHhHHhHHHHHHHh
Q 017196 196 EHLCYLVVDETDRLLREAYQAWLPTVLQL 224 (375)
Q Consensus 196 ~~~~~vIiDE~h~l~~~~~~~~l~~i~~~ 224 (375)
...+++|+||+|.+........+..+++.
T Consensus 104 ~~~~vliiDEi~~l~~~~~~~~L~~~le~ 132 (324)
T 3u61_B 104 GRQKVIVIDEFDRSGLAESQRHLRSFMEA 132 (324)
T ss_dssp SCEEEEEEESCCCGGGHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCcccCcHHHHHHHHHHHHh
Confidence 36779999999988623333444444444
No 120
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=95.87 E-value=0.052 Score=46.75 Aligned_cols=19 Identities=21% Similarity=0.209 Sum_probs=16.2
Q ss_pred CCCCEEEECCCCCchHHHh
Q 017196 68 FERDLCINSPTGSGKTLSY 86 (375)
Q Consensus 68 ~~~~~ii~a~TGsGKTl~~ 86 (375)
.+..+++.+|+|+|||..+
T Consensus 51 ~~~~~ll~G~~G~GKT~la 69 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLI 69 (242)
T ss_dssp SCSEEEEECSTTSSHHHHH
T ss_pred CCCeEEEECCCCCCHHHHH
Confidence 4678999999999999753
No 121
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=95.82 E-value=0.086 Score=48.98 Aligned_cols=19 Identities=26% Similarity=0.239 Sum_probs=16.2
Q ss_pred CCCCEEEECCCCCchHHHh
Q 017196 68 FERDLCINSPTGSGKTLSY 86 (375)
Q Consensus 68 ~~~~~ii~a~TGsGKTl~~ 86 (375)
.+..++|.+|+|+|||..+
T Consensus 43 ~~~~vll~G~~G~GKT~l~ 61 (387)
T 2v1u_A 43 KPSNALLYGLTGTGKTAVA 61 (387)
T ss_dssp CCCCEEECBCTTSSHHHHH
T ss_pred CCCcEEEECCCCCCHHHHH
Confidence 4568999999999999754
No 122
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=95.70 E-value=0.084 Score=50.65 Aligned_cols=39 Identities=23% Similarity=0.194 Sum_probs=23.5
Q ss_pred CCCEEEECCCCCchHHHhHHHHHHHhhhcccCCceEEEEcc
Q 017196 69 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLP 109 (375)
Q Consensus 69 ~~~~ii~a~TGsGKTl~~~l~il~~l~~~~~~~~~~lil~P 109 (375)
+..+++.||+|+|||..+- .+...+... .++..++++..
T Consensus 130 ~~~lll~Gp~G~GKTtLa~-aia~~l~~~-~~~~~v~~v~~ 168 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQ-SIGNYVVQN-EPDLRVMYITS 168 (440)
T ss_dssp SCCEEEECSSSSSHHHHHH-HHHHHHHHH-CCSSCEEEEEH
T ss_pred CCeEEEECCCCCCHHHHHH-HHHHHHHHh-CCCCeEEEeeH
Confidence 4679999999999998543 333333322 12334555543
No 123
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A*
Probab=95.67 E-value=0.023 Score=61.84 Aligned_cols=69 Identities=23% Similarity=0.235 Sum_probs=54.2
Q ss_pred CCccHhhHHHHHHhhCCCCCCCCEEEECCCCCchHHHhHHHHHHHhhhcc--cCCceEEEEcccHHHHHHHHHHHHH
Q 017196 49 SSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRA--VRCLRALVVLPTRDLALQVKDVFAA 123 (375)
Q Consensus 49 ~~~~~~Q~~~~~~~~~~~~~~~~~ii~a~TGsGKTl~~~l~il~~l~~~~--~~~~~~lil~Pt~~L~~Q~~~~~~~ 123 (375)
.++++-|.+++. . .+++++|.|+-|||||.+.+--++..+.... ....+++++++|++.+.++.+.+..
T Consensus 9 ~~~t~eQ~~~i~---~---~~~~~~v~a~AGSGKT~vl~~ri~~ll~~~~~~~~~~~il~~Tft~~aa~e~~~ri~~ 79 (1232)
T 3u4q_A 9 STWTDDQWNAIV---S---TGQDILVAAAAGSGKTAVLVERMIRKITAEENPIDVDRLLVVTFTNASAAEMKHRIAE 79 (1232)
T ss_dssp -CCCHHHHHHHH---C---CSSCEEEEECTTCCHHHHHHHHHHHHHSCSSSCCCGGGEEEECSSHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHh---C---CCCCEEEEecCCCcHHHHHHHHHHHHHhcCCCCCCccceEEEeccHHHHHHHHHHHHH
Confidence 378999999853 2 4789999999999999986666666666532 2445799999999999999888776
No 124
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=95.65 E-value=0.083 Score=46.90 Aligned_cols=19 Identities=26% Similarity=0.205 Sum_probs=15.9
Q ss_pred CCCCEEEECCCCCchHHHh
Q 017196 68 FERDLCINSPTGSGKTLSY 86 (375)
Q Consensus 68 ~~~~~ii~a~TGsGKTl~~ 86 (375)
....+++.+|+|+|||..+
T Consensus 63 ~~~~vLl~G~~GtGKT~la 81 (272)
T 1d2n_A 63 PLVSVLLEGPPHSGKTALA 81 (272)
T ss_dssp SEEEEEEECSTTSSHHHHH
T ss_pred CCeEEEEECCCCCcHHHHH
Confidence 3467999999999999864
No 125
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=95.54 E-value=0.071 Score=44.88 Aligned_cols=24 Identities=29% Similarity=0.452 Sum_probs=17.8
Q ss_pred CCEEEECCCCCchHHHhHHHHHHHh
Q 017196 70 RDLCINSPTGSGKTLSYALPIVQTL 94 (375)
Q Consensus 70 ~~~ii~a~TGsGKTl~~~l~il~~l 94 (375)
..+++.+|+|+|||..+ -.+...+
T Consensus 55 ~~~~l~G~~GtGKT~la-~~i~~~~ 78 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLL-AAIANEL 78 (202)
T ss_dssp CEEEEECSTTSSHHHHH-HHHHHHH
T ss_pred CeEEEECCCCCCHHHHH-HHHHHHH
Confidence 68999999999999854 3344444
No 126
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=95.50 E-value=0.036 Score=50.17 Aligned_cols=19 Identities=21% Similarity=0.251 Sum_probs=16.1
Q ss_pred CCCCEEEECCCCCchHHHh
Q 017196 68 FERDLCINSPTGSGKTLSY 86 (375)
Q Consensus 68 ~~~~~ii~a~TGsGKTl~~ 86 (375)
.+.++++.+|+|+|||..+
T Consensus 66 ~~~~vll~G~~GtGKT~la 84 (309)
T 3syl_A 66 PTLHMSFTGNPGTGKTTVA 84 (309)
T ss_dssp CCCEEEEEECTTSSHHHHH
T ss_pred CCceEEEECCCCCCHHHHH
Confidence 4457999999999999864
No 127
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.49 E-value=0.38 Score=45.32 Aligned_cols=19 Identities=32% Similarity=0.527 Sum_probs=16.4
Q ss_pred CCCCEEEECCCCCchHHHh
Q 017196 68 FERDLCINSPTGSGKTLSY 86 (375)
Q Consensus 68 ~~~~~ii~a~TGsGKTl~~ 86 (375)
..+.+++.+|.|||||+.+
T Consensus 181 ~prGvLL~GPPGTGKTllA 199 (405)
T 4b4t_J 181 QPKGVILYGPPGTGKTLLA 199 (405)
T ss_dssp CCCCEEEESCSSSSHHHHH
T ss_pred CCCceEEeCCCCCCHHHHH
Confidence 4578999999999999853
No 128
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=95.49 E-value=0.038 Score=50.21 Aligned_cols=16 Identities=38% Similarity=0.567 Sum_probs=14.1
Q ss_pred CEEEECCCCCchHHHh
Q 017196 71 DLCINSPTGSGKTLSY 86 (375)
Q Consensus 71 ~~ii~a~TGsGKTl~~ 86 (375)
++++.||.|+|||..+
T Consensus 48 ~~ll~G~~G~GKT~la 63 (327)
T 1iqp_A 48 HLLFAGPPGVGKTTAA 63 (327)
T ss_dssp EEEEESCTTSSHHHHH
T ss_pred eEEEECcCCCCHHHHH
Confidence 5999999999999754
No 129
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.38 E-value=0.4 Score=45.67 Aligned_cols=56 Identities=14% Similarity=0.038 Sum_probs=34.3
Q ss_pred CCccCccccCCCCCCCCCCHHHHHHHHhC---CCCCccHhhHHHHHHhhCCCCCCCCEEEECCCCCchHHHh
Q 017196 18 PVDVSLFEDCPLDHLPCLDPRLKVALQNM---GISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSY 86 (375)
Q Consensus 18 ~~~~~~~~~~~~~~~~~l~~~i~~~l~~~---g~~~~~~~Q~~~~~~~~~~~~~~~~~ii~a~TGsGKTl~~ 86 (375)
..|..+|+++. -.+...+.+... .+..|..++.. .+...+.+++.+|.|||||+.+
T Consensus 174 ~~p~~t~~dig------Gl~~~k~~l~e~v~~pl~~pe~f~~~-------g~~~prGvLLyGPPGTGKTllA 232 (434)
T 4b4t_M 174 EKPTETYSDVG------GLDKQIEELVEAIVLPMKRADKFKDM-------GIRAPKGALMYGPPGTGKTLLA 232 (434)
T ss_dssp SSCSCCGGGSC------SCHHHHHHHHHHTHHHHHCSHHHHHH-------CCCCCCEEEEESCTTSSHHHHH
T ss_pred CCCCCChHhcC------cHHHHHHHHHHHHHHHHhCHHHHHhC-------CCCCCCeeEEECcCCCCHHHHH
Confidence 34556788877 455555555431 22344444433 2224678999999999999853
No 130
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=95.08 E-value=0.12 Score=48.71 Aligned_cols=18 Identities=39% Similarity=0.619 Sum_probs=15.7
Q ss_pred CCCEEEECCCCCchHHHh
Q 017196 69 ERDLCINSPTGSGKTLSY 86 (375)
Q Consensus 69 ~~~~ii~a~TGsGKTl~~ 86 (375)
.+.+++.+|+|+|||..+
T Consensus 148 ~~~vLL~GppGtGKT~la 165 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLA 165 (389)
T ss_dssp CSEEEEESSTTSCHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 478999999999999854
No 131
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=95.08 E-value=0.22 Score=44.30 Aligned_cols=20 Identities=30% Similarity=0.444 Sum_probs=16.7
Q ss_pred CCCCCEEEECCCCCchHHHh
Q 017196 67 LFERDLCINSPTGSGKTLSY 86 (375)
Q Consensus 67 ~~~~~~ii~a~TGsGKTl~~ 86 (375)
..+..+++.+|+|+|||..+
T Consensus 49 ~~~~~~ll~G~~GtGKT~la 68 (285)
T 3h4m_A 49 EPPKGILLYGPPGTGKTLLA 68 (285)
T ss_dssp CCCSEEEEESSSSSSHHHHH
T ss_pred CCCCeEEEECCCCCcHHHHH
Confidence 35678999999999999753
No 132
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=95.06 E-value=0.066 Score=49.89 Aligned_cols=25 Identities=24% Similarity=0.194 Sum_probs=18.1
Q ss_pred CCCEEEECCCCCchHHHhHHHHHHHh
Q 017196 69 ERDLCINSPTGSGKTLSYALPIVQTL 94 (375)
Q Consensus 69 ~~~~ii~a~TGsGKTl~~~l~il~~l 94 (375)
...+++.+|+|+|||..+ -.+...+
T Consensus 45 ~~~vll~G~~G~GKT~la-~~l~~~~ 69 (384)
T 2qby_B 45 KFSNLFLGLTGTGKTFVS-KYIFNEI 69 (384)
T ss_dssp CCEEEEEECTTSSHHHHH-HHHHHHH
T ss_pred CCcEEEECCCCCCHHHHH-HHHHHHH
Confidence 457999999999999764 3344444
No 133
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=94.94 E-value=0.066 Score=49.05 Aligned_cols=18 Identities=28% Similarity=0.459 Sum_probs=15.5
Q ss_pred CCCEEEECCCCCchHHHh
Q 017196 69 ERDLCINSPTGSGKTLSY 86 (375)
Q Consensus 69 ~~~~ii~a~TGsGKTl~~ 86 (375)
.+.+++.+|+|+|||..+
T Consensus 45 ~~~iLL~GppGtGKT~la 62 (322)
T 1xwi_A 45 WRGILLFGPPGTGKSYLA 62 (322)
T ss_dssp CSEEEEESSSSSCHHHHH
T ss_pred CceEEEECCCCccHHHHH
Confidence 467999999999999854
No 134
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=94.90 E-value=0.077 Score=49.22 Aligned_cols=19 Identities=32% Similarity=0.370 Sum_probs=16.0
Q ss_pred CCCCEEEECCCCCchHHHh
Q 017196 68 FERDLCINSPTGSGKTLSY 86 (375)
Q Consensus 68 ~~~~~ii~a~TGsGKTl~~ 86 (375)
.+..++|.+|.|+|||..+
T Consensus 44 ~~~~vli~G~~G~GKTtl~ 62 (386)
T 2qby_A 44 KPNNIFIYGLTGTGKTAVV 62 (386)
T ss_dssp CCCCEEEEECTTSSHHHHH
T ss_pred CCCeEEEECCCCCCHHHHH
Confidence 4568999999999999753
No 135
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=94.89 E-value=0.035 Score=48.19 Aligned_cols=40 Identities=23% Similarity=0.235 Sum_probs=26.8
Q ss_pred CCCEEEECCCCCchHHHhHHHHHHHhhhcccCCceEEEEcccHH
Q 017196 69 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRD 112 (375)
Q Consensus 69 ~~~~ii~a~TGsGKTl~~~l~il~~l~~~~~~~~~~lil~Pt~~ 112 (375)
|+=.++.+++|+|||.++ +-.+.+... .+.+++++-|...
T Consensus 19 g~l~v~~G~MgsGKTT~l-L~~~~r~~~---~g~kvli~kp~~D 58 (234)
T 2orv_A 19 GQIQVILGPMFSGKSTEL-MRRVRRFQI---AQYKCLVIKYAKD 58 (234)
T ss_dssp CEEEEEECCTTSCHHHHH-HHHHHHHHT---TTCCEEEEEETTC
T ss_pred eEEEEEECCCCCcHHHHH-HHHHHHHHH---CCCeEEEEeecCC
Confidence 555678899999999763 434433332 3447999988764
No 136
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=94.77 E-value=0.033 Score=44.92 Aligned_cols=18 Identities=17% Similarity=0.237 Sum_probs=16.0
Q ss_pred CCCCEEEECCCCCchHHH
Q 017196 68 FERDLCINSPTGSGKTLS 85 (375)
Q Consensus 68 ~~~~~ii~a~TGsGKTl~ 85 (375)
.+..+.+.+|+|+|||..
T Consensus 35 ~g~~~~l~G~~G~GKTtL 52 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHL 52 (149)
T ss_dssp CCSEEEEESSSTTTTCHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 678899999999999974
No 137
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=94.75 E-value=0.052 Score=49.08 Aligned_cols=16 Identities=38% Similarity=0.654 Sum_probs=14.1
Q ss_pred CEEEECCCCCchHHHh
Q 017196 71 DLCINSPTGSGKTLSY 86 (375)
Q Consensus 71 ~~ii~a~TGsGKTl~~ 86 (375)
++++.||.|+|||..+
T Consensus 40 ~~ll~G~~G~GKt~la 55 (319)
T 2chq_A 40 HLLFSGPPGTGKTATA 55 (319)
T ss_dssp CEEEESSSSSSHHHHH
T ss_pred eEEEECcCCcCHHHHH
Confidence 5999999999999754
No 138
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.74 E-value=0.15 Score=48.91 Aligned_cols=19 Identities=32% Similarity=0.555 Sum_probs=16.4
Q ss_pred CCCCEEEECCCCCchHHHh
Q 017196 68 FERDLCINSPTGSGKTLSY 86 (375)
Q Consensus 68 ~~~~~ii~a~TGsGKTl~~ 86 (375)
..+.+++.+|.|||||+.+
T Consensus 242 pprGILLyGPPGTGKTlLA 260 (467)
T 4b4t_H 242 PPKGILLYGPPGTGKTLCA 260 (467)
T ss_dssp CCSEEEECSCTTSSHHHHH
T ss_pred CCCceEeeCCCCCcHHHHH
Confidence 5678999999999999853
No 139
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.68 E-value=0.4 Score=43.99 Aligned_cols=16 Identities=31% Similarity=0.600 Sum_probs=13.9
Q ss_pred CEEEECCCCCchHHHh
Q 017196 71 DLCINSPTGSGKTLSY 86 (375)
Q Consensus 71 ~~ii~a~TGsGKTl~~ 86 (375)
++++.||.|+|||..+
T Consensus 38 ~~ll~Gp~G~GKTtl~ 53 (354)
T 1sxj_E 38 HLLLYGPNGTGKKTRC 53 (354)
T ss_dssp CEEEECSTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 4999999999999753
No 140
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=94.67 E-value=0.15 Score=47.37 Aligned_cols=19 Identities=21% Similarity=0.385 Sum_probs=16.0
Q ss_pred CCCCEEEECCCCCchHHHh
Q 017196 68 FERDLCINSPTGSGKTLSY 86 (375)
Q Consensus 68 ~~~~~ii~a~TGsGKTl~~ 86 (375)
..+.+++.+|+|+|||..+
T Consensus 83 ~~~~iLL~GppGtGKT~la 101 (355)
T 2qp9_X 83 PTSGILLYGPPGTGKSYLA 101 (355)
T ss_dssp CCCCEEEECSTTSCHHHHH
T ss_pred CCceEEEECCCCCcHHHHH
Confidence 3467999999999999864
No 141
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.63 E-value=0.045 Score=50.37 Aligned_cols=17 Identities=29% Similarity=0.542 Sum_probs=14.5
Q ss_pred CCEEEECCCCCchHHHh
Q 017196 70 RDLCINSPTGSGKTLSY 86 (375)
Q Consensus 70 ~~~ii~a~TGsGKTl~~ 86 (375)
.++++.+|+|+|||..+
T Consensus 59 ~~~ll~G~~G~GKT~la 75 (353)
T 1sxj_D 59 PHMLFYGPPGTGKTSTI 75 (353)
T ss_dssp CCEEEECSTTSSHHHHH
T ss_pred CEEEEECCCCCCHHHHH
Confidence 45999999999999753
No 142
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=94.53 E-value=0.16 Score=46.33 Aligned_cols=18 Identities=22% Similarity=0.477 Sum_probs=15.5
Q ss_pred CCCEEEECCCCCchHHHh
Q 017196 69 ERDLCINSPTGSGKTLSY 86 (375)
Q Consensus 69 ~~~~ii~a~TGsGKTl~~ 86 (375)
.+.+++.+|+|+|||..+
T Consensus 51 ~~~vLl~GppGtGKT~la 68 (322)
T 3eie_A 51 TSGILLYGPPGTGKSYLA 68 (322)
T ss_dssp CCEEEEECSSSSCHHHHH
T ss_pred CCeEEEECCCCCcHHHHH
Confidence 467999999999999864
No 143
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=94.26 E-value=0.16 Score=47.25 Aligned_cols=16 Identities=25% Similarity=0.441 Sum_probs=14.2
Q ss_pred CEEEECCCCCchHHHh
Q 017196 71 DLCINSPTGSGKTLSY 86 (375)
Q Consensus 71 ~~ii~a~TGsGKTl~~ 86 (375)
.++|.+|+|+|||..+
T Consensus 46 ~~li~G~~G~GKTtl~ 61 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTL 61 (389)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 7999999999999753
No 144
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=94.16 E-value=0.29 Score=41.71 Aligned_cols=29 Identities=17% Similarity=0.118 Sum_probs=21.3
Q ss_pred HHHHhhC-CCCCCCCEEEECCCCCchHHHh
Q 017196 58 VWQETIG-PGLFERDLCINSPTGSGKTLSY 86 (375)
Q Consensus 58 ~~~~~~~-~~~~~~~~ii~a~TGsGKTl~~ 86 (375)
+++.++. .+..|.-+++.+|+|+|||..+
T Consensus 11 ~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~ 40 (235)
T 2w0m_A 11 DFDKLIQGGIPQGFFIALTGEPGTGKTIFS 40 (235)
T ss_dssp HHHGGGTTSEETTCEEEEECSTTSSHHHHH
T ss_pred HHHHHhcCCCcCCCEEEEEcCCCCCHHHHH
Confidence 3445553 4557788899999999999643
No 145
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=93.96 E-value=0.13 Score=47.30 Aligned_cols=16 Identities=38% Similarity=0.619 Sum_probs=13.9
Q ss_pred CEEEECCCCCchHHHh
Q 017196 71 DLCINSPTGSGKTLSY 86 (375)
Q Consensus 71 ~~ii~a~TGsGKTl~~ 86 (375)
++++.||.|+|||..+
T Consensus 48 ~~ll~Gp~G~GKTtla 63 (340)
T 1sxj_C 48 HLLFYGPPGTGKTSTI 63 (340)
T ss_dssp CEEEECSSSSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 3899999999999754
No 146
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=93.85 E-value=0.11 Score=47.11 Aligned_cols=17 Identities=18% Similarity=-0.107 Sum_probs=14.4
Q ss_pred CCEEEECCCCCchHHHh
Q 017196 70 RDLCINSPTGSGKTLSY 86 (375)
Q Consensus 70 ~~~ii~a~TGsGKTl~~ 86 (375)
...++.+|.|+|||..+
T Consensus 19 ~~~Lf~Gp~G~GKtt~a 35 (305)
T 2gno_A 19 ISILINGEDLSYPREVS 35 (305)
T ss_dssp EEEEEECSSSSHHHHHH
T ss_pred cEEEEECCCCCCHHHHH
Confidence 46899999999999764
No 147
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=93.75 E-value=0.21 Score=46.25 Aligned_cols=17 Identities=24% Similarity=0.253 Sum_probs=14.2
Q ss_pred CCEEEECCCCCchHHHh
Q 017196 70 RDLCINSPTGSGKTLSY 86 (375)
Q Consensus 70 ~~~ii~a~TGsGKTl~~ 86 (375)
..+++.||.|+|||..+
T Consensus 39 ~~~ll~G~~G~GKT~la 55 (373)
T 1jr3_A 39 HAYLFSGTRGVGKTSIA 55 (373)
T ss_dssp SEEEEESCTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 34799999999999754
No 148
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=93.57 E-value=0.92 Score=38.36 Aligned_cols=17 Identities=24% Similarity=0.253 Sum_probs=14.3
Q ss_pred CCEEEECCCCCchHHHh
Q 017196 70 RDLCINSPTGSGKTLSY 86 (375)
Q Consensus 70 ~~~ii~a~TGsGKTl~~ 86 (375)
..++|.+|.|+|||..+
T Consensus 46 ~~~ll~G~~G~GKT~l~ 62 (250)
T 1njg_A 46 HAYLFSGTRGVGKTSIA 62 (250)
T ss_dssp SEEEEECSTTSCHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 36899999999999753
No 149
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=93.40 E-value=0.34 Score=43.61 Aligned_cols=16 Identities=38% Similarity=0.459 Sum_probs=14.0
Q ss_pred CEEEECCCCCchHHHh
Q 017196 71 DLCINSPTGSGKTLSY 86 (375)
Q Consensus 71 ~~ii~a~TGsGKTl~~ 86 (375)
++++.||.|+|||..+
T Consensus 44 ~~ll~G~~G~GKt~la 59 (323)
T 1sxj_B 44 HMIISGMPGIGKTTSV 59 (323)
T ss_dssp CEEEECSTTSSHHHHH
T ss_pred eEEEECcCCCCHHHHH
Confidence 4999999999999754
No 150
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=93.08 E-value=0.61 Score=44.43 Aligned_cols=20 Identities=25% Similarity=0.187 Sum_probs=15.4
Q ss_pred CCCEEEECCCCCchHHHhHH
Q 017196 69 ERDLCINSPTGSGKTLSYAL 88 (375)
Q Consensus 69 ~~~~ii~a~TGsGKTl~~~l 88 (375)
+.-+++.+++|+|||....-
T Consensus 97 ~~vI~lvG~~GsGKTTt~~k 116 (433)
T 3kl4_A 97 PFIIMLVGVQGSGKTTTAGK 116 (433)
T ss_dssp SEEEEECCCTTSCHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHH
Confidence 34578889999999986533
No 151
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=92.61 E-value=0.2 Score=48.01 Aligned_cols=18 Identities=28% Similarity=0.459 Sum_probs=15.5
Q ss_pred CCCEEEECCCCCchHHHh
Q 017196 69 ERDLCINSPTGSGKTLSY 86 (375)
Q Consensus 69 ~~~~ii~a~TGsGKTl~~ 86 (375)
.+.+++.+|+|+|||..+
T Consensus 167 ~~~vLL~GppGtGKT~lA 184 (444)
T 2zan_A 167 WRGILLFGPPGTGKSYLA 184 (444)
T ss_dssp CSEEEEECSTTSSHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 467999999999999854
No 152
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=92.54 E-value=1.2 Score=40.48 Aligned_cols=29 Identities=21% Similarity=0.062 Sum_probs=20.1
Q ss_pred HHHHhh-CCCCCCCCEEEECCCCCchHHHh
Q 017196 58 VWQETI-GPGLFERDLCINSPTGSGKTLSY 86 (375)
Q Consensus 58 ~~~~~~-~~~~~~~~~ii~a~TGsGKTl~~ 86 (375)
.++.++ ..+..|.-++|.+++|+|||..+
T Consensus 86 ~LD~~l~GGl~~g~i~~i~G~~gsGKT~la 115 (322)
T 2i1q_A 86 ELDSVLGGGLESQSVTEFAGVFGSGKTQIM 115 (322)
T ss_dssp HHHHHTTSSEETTEEEEEEESTTSSHHHHH
T ss_pred hHHHhcCCCccCCeEEEEECCCCCCHHHHH
Confidence 344445 23445667899999999999754
No 153
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=92.06 E-value=0.39 Score=41.40 Aligned_cols=54 Identities=17% Similarity=0.087 Sum_probs=31.7
Q ss_pred CCCCCCEEEECCCCCchHHHhHHHHHHHhhhcccCCceEEEEcccHHHHHHHHHHHHHh
Q 017196 66 GLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAI 124 (375)
Q Consensus 66 ~~~~~~~ii~a~TGsGKTl~~~l~il~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~ 124 (375)
+..|.-+++.+++|+|||..++--+...... +.+++++.-.. -..++.+.+..+
T Consensus 20 l~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~----~~~v~~~~~e~-~~~~~~~~~~~~ 73 (247)
T 2dr3_A 20 IPERNVVLLSGGPGTGKTIFSQQFLWNGLKM----GEPGIYVALEE-HPVQVRQNMAQF 73 (247)
T ss_dssp EETTCEEEEEECTTSSHHHHHHHHHHHHHHT----TCCEEEEESSS-CHHHHHHHHHTT
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHHHhc----CCeEEEEEccC-CHHHHHHHHHHc
Confidence 4467788999999999997543323333222 22577766432 234555555543
No 154
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=91.95 E-value=0.58 Score=45.39 Aligned_cols=19 Identities=37% Similarity=0.557 Sum_probs=16.3
Q ss_pred CCCCEEEECCCCCchHHHh
Q 017196 68 FERDLCINSPTGSGKTLSY 86 (375)
Q Consensus 68 ~~~~~ii~a~TGsGKTl~~ 86 (375)
....+++.+|+|+|||+.+
T Consensus 237 ~~~~vLL~GppGtGKT~lA 255 (489)
T 3hu3_A 237 PPRGILLYGPPGTGKTLIA 255 (489)
T ss_dssp CCCEEEEECSTTSSHHHHH
T ss_pred CCCcEEEECcCCCCHHHHH
Confidence 4567999999999999854
No 155
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=91.67 E-value=1.8 Score=34.72 Aligned_cols=76 Identities=20% Similarity=0.298 Sum_probs=54.6
Q ss_pred ceEEEEcccHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhh-cCCCcEEEeCc
Q 017196 102 LRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQEL-QSAVDILVATP 180 (375)
Q Consensus 102 ~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~IiV~Tp 180 (375)
.++||.++++.-++.+...+... ++.+..++|+.+...... ..+.. .+...|+|+|.
T Consensus 36 ~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~hg~~~~~~r~~------------------~~~~f~~g~~~vlv~T~ 93 (163)
T 2hjv_A 36 DSCIIFCRTKEHVNQLTDELDDL----GYPCDKIHGGMIQEDRFD------------------VMNEFKRGEYRYLVATD 93 (163)
T ss_dssp SSEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHH------------------HHHHHHTTSCSEEEECG
T ss_pred CcEEEEECCHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHH------------------HHHHHHcCCCeEEEECC
Confidence 47999999999999999888765 678999999876554422 12222 34579999993
Q ss_pred HHHHHHHhhcCCCCCCCccEEEEecc
Q 017196 181 GRLMDHINATRGFTLEHLCYLVVDET 206 (375)
Q Consensus 181 ~~l~~~l~~~~~~~~~~~~~vIiDE~ 206 (375)
- +. .++++..+++||.-+.
T Consensus 94 ~-----~~--~Gld~~~~~~Vi~~~~ 112 (163)
T 2hjv_A 94 V-----AA--RGIDIENISLVINYDL 112 (163)
T ss_dssp G-----GT--TTCCCSCCSEEEESSC
T ss_pred h-----hh--cCCchhcCCEEEEeCC
Confidence 2 11 4588888998887554
No 156
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=91.64 E-value=4.4 Score=37.05 Aligned_cols=51 Identities=10% Similarity=-0.092 Sum_probs=29.8
Q ss_pred HHHhhC-CCCCCCCEEEECCCCCchHHHhHHHHHHHhhhcc---cCCceEEEEccc
Q 017196 59 WQETIG-PGLFERDLCINSPTGSGKTLSYALPIVQTLSNRA---VRCLRALVVLPT 110 (375)
Q Consensus 59 ~~~~~~-~~~~~~~~ii~a~TGsGKTl~~~l~il~~l~~~~---~~~~~~lil~Pt 110 (375)
++.++. .+..|.-++|.+++|+|||..+ +.+........ ..+.+++|+.-.
T Consensus 111 LD~~LgGGl~~G~i~~I~G~~GsGKTtla-~~la~~~~~~~~~gg~~~~vlyi~~E 165 (343)
T 1v5w_A 111 FDKLLGGGIESMAITEAFGEFRTGKTQLS-HTLCVTAQLPGAGGYPGGKIIFIDTE 165 (343)
T ss_dssp HHHHTTSSBCSSEEEEEECCTTCTHHHHH-HHHHHHTTSCBTTTBCCCEEEEEESS
T ss_pred HHHHhcCCCCCCeEEEEECCCCCCHHHHH-HHHHHHHhcccccCCCCCeEEEEECC
Confidence 455553 4556677899999999999754 33333322210 023357777643
No 157
>3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency decline, ATP-binding, DNA DAMA repair, DNA-binding, helicase, hydrolase; 1.95A {Escherichia coli} PDB: 2b2n_A* 4dfc_A
Probab=91.33 E-value=1.6 Score=42.14 Aligned_cols=53 Identities=15% Similarity=0.167 Sum_probs=40.0
Q ss_pred CCCCEEEECCCCCchHHHhHHHHHHHhhhcccCCceEEEEcccHHHHHHHHHHHHHhccc
Q 017196 68 FERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPA 127 (375)
Q Consensus 68 ~~~~~ii~a~TGsGKTl~~~l~il~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~ 127 (375)
.+....+.+.||||||++..- ++. .. +..+|||+|+...|.|++..++.+.+.
T Consensus 13 ~~~~~~l~g~~gs~ka~~~a~-l~~---~~---~~p~lvv~~~~~~A~~l~~~l~~~~~~ 65 (483)
T 3hjh_A 13 AGEQRLLGELTGAACATLVAE-IAE---RH---AGPVVLIAPDMQNALRLHDEISQFTDQ 65 (483)
T ss_dssp TTCEEEEECCCTTHHHHHHHH-HHH---HS---SSCEEEEESSHHHHHHHHHHHHHTCSS
T ss_pred CCCeEEEeCCCchHHHHHHHH-HHH---Hh---CCCEEEEeCCHHHHHHHHHHHHhhCCC
Confidence 456789999999999985322 111 11 124999999999999999999998763
No 158
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=91.15 E-value=1.9 Score=35.84 Aligned_cols=76 Identities=12% Similarity=0.196 Sum_probs=54.2
Q ss_pred ceEEEEcccHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhh-cCCCcEEEeCc
Q 017196 102 LRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQEL-QSAVDILVATP 180 (375)
Q Consensus 102 ~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~IiV~Tp 180 (375)
.++||.+++++-++.+...++.. ++.+..++|+.+...... ..+.. .+...|+|+|.
T Consensus 55 ~~~lVF~~~~~~~~~l~~~L~~~----g~~~~~lhg~~~~~~R~~------------------~l~~F~~g~~~vLvaT~ 112 (191)
T 2p6n_A 55 PPVLIFAEKKADVDAIHEYLLLK----GVEAVAIHGGKDQEERTK------------------AIEAFREGKKDVLVATD 112 (191)
T ss_dssp SCEEEECSCHHHHHHHHHHHHHH----TCCEEEECTTSCHHHHHH------------------HHHHHHHTSCSEEEECH
T ss_pred CCEEEEECCHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHH------------------HHHHHhcCCCEEEEEcC
Confidence 36999999999999998888765 688899999876554422 11122 34579999992
Q ss_pred HHHHHHHhhcCCCCCCCccEEEEecc
Q 017196 181 GRLMDHINATRGFTLEHLCYLVVDET 206 (375)
Q Consensus 181 ~~l~~~l~~~~~~~~~~~~~vIiDE~ 206 (375)
.+. .++++..+++||.=+.
T Consensus 113 -----~~~--~Gldi~~v~~VI~~d~ 131 (191)
T 2p6n_A 113 -----VAS--KGLDFPAIQHVINYDM 131 (191)
T ss_dssp -----HHH--TTCCCCCCSEEEESSC
T ss_pred -----chh--cCCCcccCCEEEEeCC
Confidence 222 4588888998887443
No 159
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=91.13 E-value=1.5 Score=35.78 Aligned_cols=76 Identities=20% Similarity=0.263 Sum_probs=54.2
Q ss_pred CceEEEEcccHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhh-cCCCcEEEeC
Q 017196 101 CLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQEL-QSAVDILVAT 179 (375)
Q Consensus 101 ~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~IiV~T 179 (375)
..++||.++++.-++.+...+... ++.+..++|+.+...... ..+.. .+..+|+|+|
T Consensus 34 ~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~~g~~~~~~R~~------------------~~~~f~~g~~~vLvaT 91 (175)
T 2rb4_A 34 IGQAIIFCQTRRNAKWLTVEMIQD----GHQVSLLSGELTVEQRAS------------------IIQRFRDGKEKVLITT 91 (175)
T ss_dssp CSEEEEECSCHHHHHHHHHHHHTT----TCCEEEECSSCCHHHHHH------------------HHHHHHTTSCSEEEEC
T ss_pred CCCEEEEECCHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHH------------------HHHHHHcCCCeEEEEe
Confidence 347999999999999988888764 678899999876655422 12222 3458999999
Q ss_pred cHHHHHHHhhcCCCCCCCccEEEEec
Q 017196 180 PGRLMDHINATRGFTLEHLCYLVVDE 205 (375)
Q Consensus 180 p~~l~~~l~~~~~~~~~~~~~vIiDE 205 (375)
.. + ..++++..+++||.-+
T Consensus 92 ~~-----~--~~Gid~~~~~~Vi~~d 110 (175)
T 2rb4_A 92 NV-----C--ARGIDVKQVTIVVNFD 110 (175)
T ss_dssp CS-----C--CTTTCCTTEEEEEESS
T ss_pred cc-----h--hcCCCcccCCEEEEeC
Confidence 32 1 2457888899888533
No 160
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=91.05 E-value=0.33 Score=46.55 Aligned_cols=17 Identities=29% Similarity=0.489 Sum_probs=14.7
Q ss_pred CCEEEECCCCCchHHHh
Q 017196 70 RDLCINSPTGSGKTLSY 86 (375)
Q Consensus 70 ~~~ii~a~TGsGKTl~~ 86 (375)
..+++.+|+|+|||..+
T Consensus 51 ~~vLL~GppGtGKTtlA 67 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTLA 67 (447)
T ss_dssp CEEEEECSTTSSHHHHH
T ss_pred cEEEEECCCCCcHHHHH
Confidence 46999999999999854
No 161
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=90.73 E-value=1.7 Score=39.47 Aligned_cols=66 Identities=12% Similarity=0.008 Sum_probs=35.0
Q ss_pred HHHHhh-CCCCCCCCEEEECCCCCchHHHhHHHHHHHhhhc---ccCCceEEEEcccHHH-HHHHHHHHHHh
Q 017196 58 VWQETI-GPGLFERDLCINSPTGSGKTLSYALPIVQTLSNR---AVRCLRALVVLPTRDL-ALQVKDVFAAI 124 (375)
Q Consensus 58 ~~~~~~-~~~~~~~~~ii~a~TGsGKTl~~~l~il~~l~~~---~~~~~~~lil~Pt~~L-~~Q~~~~~~~~ 124 (375)
.++.++ ..+..|.-++|.+++|+|||..+ +.+...+... ...+.+++|+.--..+ ..++.+.++.+
T Consensus 95 ~LD~~L~GGl~~G~i~~i~G~~GsGKT~la-~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~~~~~~ 165 (324)
T 2z43_A 95 ALDGLLAGGIETRTMTEFFGEFGSGKTQLC-HQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIENMAKAL 165 (324)
T ss_dssp HHHHHTTTSEETTSEEEEEESTTSSHHHHH-HHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHHHHHT
T ss_pred hHHHhcCCCCCCCcEEEEECCCCCCHhHHH-HHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 344555 24456677899999999999754 3333332221 0013357777643321 23444444443
No 162
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=90.72 E-value=0.52 Score=43.60 Aligned_cols=47 Identities=21% Similarity=0.061 Sum_probs=28.9
Q ss_pred HHHhhC--CCCCCCCEEEECCCCCchHHHhHHHHHHHhhhcccCCceEEEEcc
Q 017196 59 WQETIG--PGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLP 109 (375)
Q Consensus 59 ~~~~~~--~~~~~~~~ii~a~TGsGKTl~~~l~il~~l~~~~~~~~~~lil~P 109 (375)
++.++. .+..|.-++|.++.|+|||..++- +...+... +.+++|+.-
T Consensus 49 LD~~Lg~GGl~~G~iv~I~G~pGsGKTtLal~-la~~~~~~---g~~vlyi~~ 97 (349)
T 2zr9_A 49 LDVALGIGGLPRGRVIEIYGPESSGKTTVALH-AVANAQAA---GGIAAFIDA 97 (349)
T ss_dssp HHHHTSSSSEETTSEEEEEESTTSSHHHHHHH-HHHHHHHT---TCCEEEEES
T ss_pred HHHHhccCCccCCeEEEEECCCCCCHHHHHHH-HHHHHHhC---CCeEEEEEC
Confidence 444454 455677899999999999975433 33333322 225777664
No 163
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=90.70 E-value=2.3 Score=34.20 Aligned_cols=76 Identities=13% Similarity=0.237 Sum_probs=53.8
Q ss_pred ceEEEEcccHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhh-cCCCcEEEeCc
Q 017196 102 LRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQEL-QSAVDILVATP 180 (375)
Q Consensus 102 ~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~IiV~Tp 180 (375)
.++||.+++++-++.+...++.. ++.+..++|+.+...... ..+.. .+...|+|+|.
T Consensus 31 ~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~------------------~~~~f~~g~~~vlv~T~ 88 (165)
T 1fuk_A 31 TQAVIFCNTRRKVEELTTKLRND----KFTVSAIYSDLPQQERDT------------------IMKEFRSGSSRILISTD 88 (165)
T ss_dssp SCEEEEESSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHH------------------HHHHHHTTSCSEEEEEG
T ss_pred CCEEEEECCHHHHHHHHHHHHHc----CCCEEEEECCCCHHHHHH------------------HHHHHHcCCCEEEEEcC
Confidence 47999999999999988888764 678889999876554422 12222 34579999993
Q ss_pred HHHHHHHhhcCCCCCCCccEEEEecc
Q 017196 181 GRLMDHINATRGFTLEHLCYLVVDET 206 (375)
Q Consensus 181 ~~l~~~l~~~~~~~~~~~~~vIiDE~ 206 (375)
. +. .++++..+++||.-+.
T Consensus 89 ~-----~~--~G~d~~~~~~Vi~~~~ 107 (165)
T 1fuk_A 89 L-----LA--RGIDVQQVSLVINYDL 107 (165)
T ss_dssp G-----GT--TTCCCCSCSEEEESSC
T ss_pred h-----hh--cCCCcccCCEEEEeCC
Confidence 2 11 4578888888877443
No 164
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=90.10 E-value=0.24 Score=39.28 Aligned_cols=19 Identities=11% Similarity=0.256 Sum_probs=16.8
Q ss_pred CCCCEEEECCCCCchHHHh
Q 017196 68 FERDLCINSPTGSGKTLSY 86 (375)
Q Consensus 68 ~~~~~ii~a~TGsGKTl~~ 86 (375)
.+.++++.+++|+|||..+
T Consensus 23 ~~~~vll~G~~GtGKt~lA 41 (145)
T 3n70_A 23 TDIAVWLYGAPGTGRMTGA 41 (145)
T ss_dssp CCSCEEEESSTTSSHHHHH
T ss_pred CCCCEEEECCCCCCHHHHH
Confidence 6788999999999999854
No 165
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=90.07 E-value=1.1 Score=37.05 Aligned_cols=93 Identities=23% Similarity=0.269 Sum_probs=52.6
Q ss_pred CCchHHHhHHHHHHHhhhcccCCceEEEEcccHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHHhhcCccccCc
Q 017196 79 GSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGI 158 (375)
Q Consensus 79 GsGKTl~~~l~il~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (375)
...|.. ++.-++... .++.++||.++++.-++.+...++.. ++.+..++|+.+....
T Consensus 29 ~~~K~~-~L~~ll~~~----~~~~k~lVF~~~~~~~~~l~~~L~~~----g~~~~~lhg~~~~~~r-------------- 85 (185)
T 2jgn_A 29 ESDKRS-FLLDLLNAT----GKDSLTLVFVETKKGADSLEDFLYHE----GYACTSIHGDRSQRDR-------------- 85 (185)
T ss_dssp GGGHHH-HHHHHHHHC-----CCSCEEEEESCHHHHHHHHHHHHHT----TCCEEEEC----------------------
T ss_pred cHHHHH-HHHHHHHhc----CCCCeEEEEECCHHHHHHHHHHHHHc----CCceEEEeCCCCHHHH--------------
Confidence 456654 333343332 13457999999999999988888764 6788889987654332
Q ss_pred cCCchhHHHhh-cCCCcEEEeCcHHHHHHHhhcCCCCCCCccEEEEec
Q 017196 159 CYDPEDVLQEL-QSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDE 205 (375)
Q Consensus 159 ~~~~~~~~~~~-~~~~~IiV~Tp~~l~~~l~~~~~~~~~~~~~vIiDE 205 (375)
++..+.. .+...|+|+|.. +. .++++..+++||.=+
T Consensus 86 ----~~~~~~f~~g~~~vLvaT~~-----~~--~Gldi~~~~~VI~~d 122 (185)
T 2jgn_A 86 ----EEALHQFRSGKSPILVATAV-----AA--RGLDISNVKHVINFD 122 (185)
T ss_dssp ----CHHHHHHHHTSSSEEEEEC-------------CCCSBSEEEESS
T ss_pred ----HHHHHHHHcCCCeEEEEcCh-----hh--cCCCcccCCEEEEeC
Confidence 1112222 345789999932 11 357788888887643
No 166
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=89.91 E-value=2.1 Score=36.17 Aligned_cols=73 Identities=25% Similarity=0.284 Sum_probs=53.2
Q ss_pred ceEEEEcccHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhh-cCCCcEEEeCc
Q 017196 102 LRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQEL-QSAVDILVATP 180 (375)
Q Consensus 102 ~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~IiV~Tp 180 (375)
.++||.++++.-++.+...+... ++.+..++|+.+...... ..+.. .+..+|+|+|.
T Consensus 32 ~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~lhg~~~~~~r~~------------------~~~~f~~g~~~vlvaT~ 89 (212)
T 3eaq_A 32 DRAMVFTRTKAETEEIAQGLLRL----GHPAQALHGDLSQGERER------------------VLGAFRQGEVRVLVATD 89 (212)
T ss_dssp SCEEEECSSHHHHHHHHHHHHHH----TCCEEEECSSSCHHHHHH------------------HHHHHHSSSCCEEEECT
T ss_pred CeEEEEeCCHHHHHHHHHHHHHc----CCCEEEEECCCCHHHHHH------------------HHHHHHCCCCeEEEecC
Confidence 47999999999999988888765 688899999877655422 12223 34589999993
Q ss_pred HHHHHHHhhcCCCCCCCccEEEE
Q 017196 181 GRLMDHINATRGFTLEHLCYLVV 203 (375)
Q Consensus 181 ~~l~~~l~~~~~~~~~~~~~vIi 203 (375)
- +. .++++..+++||.
T Consensus 90 ~-----~~--~Gidi~~v~~Vi~ 105 (212)
T 3eaq_A 90 V-----AA--RGLDIPQVDLVVH 105 (212)
T ss_dssp T-----TT--CSSSCCCBSEEEE
T ss_pred h-----hh--cCCCCccCcEEEE
Confidence 2 11 4588888998875
No 167
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=89.85 E-value=0.97 Score=42.03 Aligned_cols=49 Identities=20% Similarity=0.080 Sum_probs=30.9
Q ss_pred HHHHhhC--CCCCCCCEEEECCCCCchHHHhHHHHHHHhhhcccCCceEEEEccc
Q 017196 58 VWQETIG--PGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPT 110 (375)
Q Consensus 58 ~~~~~~~--~~~~~~~~ii~a~TGsGKTl~~~l~il~~l~~~~~~~~~~lil~Pt 110 (375)
.++.++. .+..|.-++|.++.|+|||..+ +.+...+... +.+++|+..-
T Consensus 61 ~LD~~Lg~GGl~~G~li~I~G~pGsGKTtla-l~la~~~~~~---g~~vlyi~~E 111 (366)
T 1xp8_A 61 SLDLALGVGGIPRGRITEIYGPESGGKTTLA-LAIVAQAQKA---GGTCAFIDAE 111 (366)
T ss_dssp HHHHHTSSSSEETTSEEEEEESTTSSHHHHH-HHHHHHHHHT---TCCEEEEESS
T ss_pred HHHHHhCCCCccCCcEEEEEcCCCCChHHHH-HHHHHHHHHC---CCeEEEEECC
Confidence 4555564 5556778899999999999654 4444444332 2246776643
No 168
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=89.75 E-value=0.41 Score=40.68 Aligned_cols=53 Identities=11% Similarity=0.157 Sum_probs=35.3
Q ss_pred HHHHHHHHhCCCCCccHhhHHHHHHhhCCCCCCCCEEEECCCCCchHHHhHHHHHH
Q 017196 37 PRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQ 92 (375)
Q Consensus 37 ~~i~~~l~~~g~~~~~~~Q~~~~~~~~~~~~~~~~~ii~a~TGsGKTl~~~l~il~ 92 (375)
..|.+.|.-.|+ .+... ..++..++..+.+...+++.+|.|+|||..+ ..+..
T Consensus 28 ~~I~~~l~yq~~-~~~~f-~~~l~~~~~~iPkkn~ili~GPPGtGKTt~a-~ala~ 80 (212)
T 1tue_A 28 RPIVQFLRYQQI-EFITF-LGALKSFLKGTPKKNCLVFCGPANTGKSYFG-MSFIH 80 (212)
T ss_dssp HHHHHHHHHTTC-CHHHH-HHHHHHHHHTCTTCSEEEEESCGGGCHHHHH-HHHHH
T ss_pred HHHHHHHHHcCc-CHHHH-HHHHHHHHhcCCcccEEEEECCCCCCHHHHH-HHHHH
Confidence 456677765564 55555 5566667765555556899999999999753 43433
No 169
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=89.54 E-value=0.74 Score=42.64 Aligned_cols=48 Identities=21% Similarity=0.009 Sum_probs=29.7
Q ss_pred HHHhhC--CCCCCCCEEEECCCCCchHHHhHHHHHHHhhhcccCCceEEEEccc
Q 017196 59 WQETIG--PGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPT 110 (375)
Q Consensus 59 ~~~~~~--~~~~~~~~ii~a~TGsGKTl~~~l~il~~l~~~~~~~~~~lil~Pt 110 (375)
++.++. .+..|.-++|.+|.|+|||.. ++.+...+... +.+++++..-
T Consensus 49 LD~~Lg~GGi~~G~i~~I~GppGsGKSTL-al~la~~~~~~---gg~VlyId~E 98 (356)
T 3hr8_A 49 IDIATGVGGYPRGRIVEIFGQESSGKTTL-ALHAIAEAQKM---GGVAAFIDAE 98 (356)
T ss_dssp HHHHTSSSSEETTEEEEEEESTTSSHHHH-HHHHHHHHHHT---TCCEEEEESS
T ss_pred HHHHhccCCccCCcEEEEECCCCCCHHHH-HHHHHHHHHhc---CCeEEEEecc
Confidence 444443 444677789999999999964 44444444332 2257777643
No 170
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=89.30 E-value=2.3 Score=39.53 Aligned_cols=18 Identities=22% Similarity=0.226 Sum_probs=14.8
Q ss_pred CCCEEE--ECCCCCchHHHh
Q 017196 69 ERDLCI--NSPTGSGKTLSY 86 (375)
Q Consensus 69 ~~~~ii--~a~TGsGKTl~~ 86 (375)
+..++| .++.|+|||..+
T Consensus 50 ~~~~li~i~G~~G~GKT~L~ 69 (412)
T 1w5s_A 50 DVNMIYGSIGRVGIGKTTLA 69 (412)
T ss_dssp CEEEEEECTTCCSSSHHHHH
T ss_pred CCEEEEeCcCcCCCCHHHHH
Confidence 456888 899999999753
No 171
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=89.29 E-value=0.48 Score=40.92 Aligned_cols=22 Identities=23% Similarity=0.078 Sum_probs=17.9
Q ss_pred CCCCCCCEEEECCCCCchHHHh
Q 017196 65 PGLFERDLCINSPTGSGKTLSY 86 (375)
Q Consensus 65 ~~~~~~~~ii~a~TGsGKTl~~ 86 (375)
.+..|.-+.+.+|+|+|||...
T Consensus 26 gi~~G~~~~l~GpnGsGKSTLl 47 (251)
T 2ehv_A 26 GFPEGTTVLLTGGTGTGKTTFA 47 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHH
T ss_pred CCCCCcEEEEEeCCCCCHHHHH
Confidence 3447788999999999999754
No 172
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=89.29 E-value=1.5 Score=43.69 Aligned_cols=19 Identities=21% Similarity=0.354 Sum_probs=16.8
Q ss_pred CCCCEEEECCCCCchHHHh
Q 017196 68 FERDLCINSPTGSGKTLSY 86 (375)
Q Consensus 68 ~~~~~ii~a~TGsGKTl~~ 86 (375)
.|..+++.+|+|+|||..+
T Consensus 59 ~g~~vll~Gp~GtGKTtla 77 (604)
T 3k1j_A 59 QKRHVLLIGEPGTGKSMLG 77 (604)
T ss_dssp TTCCEEEECCTTSSHHHHH
T ss_pred CCCEEEEEeCCCCCHHHHH
Confidence 6789999999999999753
No 173
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=89.21 E-value=0.24 Score=55.79 Aligned_cols=49 Identities=18% Similarity=0.096 Sum_probs=32.1
Q ss_pred HHHhhC--CCCCCCCEEEECCCCCchHHHhHHHHHHHhhhcccCCceEEEEcccH
Q 017196 59 WQETIG--PGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTR 111 (375)
Q Consensus 59 ~~~~~~--~~~~~~~~ii~a~TGsGKTl~~~l~il~~l~~~~~~~~~~lil~Pt~ 111 (375)
++.++. .+..++++++.+|+|+|||..+.-.+.+.... +.+++++..-.
T Consensus 1415 LD~lLG~GGi~~g~~vll~GppGtGKT~LA~ala~ea~~~----G~~v~Fi~~e~ 1465 (2050)
T 3cmu_A 1415 LDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQRE----GKTCAFIDAEH 1465 (2050)
T ss_dssp HHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHHTT----TCCEEEECTTS
T ss_pred HHHhcCCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHc----CCcEEEEEccc
Confidence 455553 34567899999999999998754444433332 23677777553
No 174
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=88.85 E-value=2.8 Score=38.97 Aligned_cols=76 Identities=22% Similarity=0.236 Sum_probs=54.9
Q ss_pred CCceEEEEcccHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhh-cCCCcEEEe
Q 017196 100 RCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQEL-QSAVDILVA 178 (375)
Q Consensus 100 ~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~IiV~ 178 (375)
.+.++||.+++++-++.+.+.+++. ++.+..++|+.+...... ..+.. .+..+|+|+
T Consensus 275 ~~~~~lVf~~~~~~~~~l~~~L~~~----~~~~~~~h~~~~~~~r~~------------------~~~~f~~g~~~vlva 332 (417)
T 2i4i_A 275 KDSLTLVFVETKKGADSLEDFLYHE----GYACTSIHGDRSQRDREE------------------ALHQFRSGKSPILVA 332 (417)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHH------------------HHHHHHHTSSCEEEE
T ss_pred CCCeEEEEECCHHHHHHHHHHHHHC----CCCeeEecCCCCHHHHHH------------------HHHHHHcCCCCEEEE
Confidence 3457999999999999998888764 678899999877654422 11222 345789999
Q ss_pred CcHHHHHHHhhcCCCCCCCccEEEEe
Q 017196 179 TPGRLMDHINATRGFTLEHLCYLVVD 204 (375)
Q Consensus 179 Tp~~l~~~l~~~~~~~~~~~~~vIiD 204 (375)
|. .+. .++++..+++||.=
T Consensus 333 T~-----~~~--~Gidip~v~~Vi~~ 351 (417)
T 2i4i_A 333 TA-----VAA--RGLDISNVKHVINF 351 (417)
T ss_dssp CH-----HHH--TTSCCCCEEEEEES
T ss_pred CC-----hhh--cCCCcccCCEEEEE
Confidence 94 233 46888899988763
No 175
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=88.76 E-value=2.3 Score=34.59 Aligned_cols=76 Identities=13% Similarity=0.152 Sum_probs=54.1
Q ss_pred ceEEEEcccHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhh-cCCCcEEEeCc
Q 017196 102 LRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQEL-QSAVDILVATP 180 (375)
Q Consensus 102 ~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~IiV~Tp 180 (375)
.++||.++++.-++.+...+... ++.+..++|+.+...... ..+.. .+...|+|+|.
T Consensus 32 ~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~hg~~~~~~r~~------------------~~~~f~~g~~~vLvaT~ 89 (172)
T 1t5i_A 32 NQVVIFVKSVQRCIALAQLLVEQ----NFPAIAIHRGMPQEERLS------------------RYQQFKDFQRRILVATN 89 (172)
T ss_dssp SSEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHH------------------HHHHHHTTSCSEEEESS
T ss_pred CcEEEEECCHHHHHHHHHHHHhc----CCCEEEEECCCCHHHHHH------------------HHHHHHCCCCcEEEECC
Confidence 47999999999999998888765 678889999876554422 12222 34589999994
Q ss_pred HHHHHHHhhcCCCCCCCccEEEEecc
Q 017196 181 GRLMDHINATRGFTLEHLCYLVVDET 206 (375)
Q Consensus 181 ~~l~~~l~~~~~~~~~~~~~vIiDE~ 206 (375)
. + ..++++..+++||.-+.
T Consensus 90 ~-----~--~~Gldi~~~~~Vi~~d~ 108 (172)
T 1t5i_A 90 L-----F--GRGMDIERVNIAFNYDM 108 (172)
T ss_dssp C-----C--STTCCGGGCSEEEESSC
T ss_pred c-----h--hcCcchhhCCEEEEECC
Confidence 2 1 24578888888886544
No 176
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=88.73 E-value=0.61 Score=42.48 Aligned_cols=45 Identities=16% Similarity=-0.026 Sum_probs=27.8
Q ss_pred CCCCCCEEEECCCCCchHHHhHHHHHHHhhhcccCCceEEEEcccHHH
Q 017196 66 GLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDL 113 (375)
Q Consensus 66 ~~~~~~~ii~a~TGsGKTl~~~l~il~~l~~~~~~~~~~lil~Pt~~L 113 (375)
+..| -+.|.+|.|+|||..+ +.++....+. ..+.+++|+..-..+
T Consensus 26 l~~G-iteI~G~pGsGKTtL~-Lq~~~~~~~~-g~g~~vlyId~E~s~ 70 (333)
T 3io5_A 26 MQSG-LLILAGPSKSFKSNFG-LTMVSSYMRQ-YPDAVCLFYDSEFGI 70 (333)
T ss_dssp BCSE-EEEEEESSSSSHHHHH-HHHHHHHHHH-CTTCEEEEEESSCCC
T ss_pred CcCC-eEEEECCCCCCHHHHH-HHHHHHHHhc-CCCceEEEEeccchh
Confidence 4456 5889999999999754 4444444332 123367887754443
No 177
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=88.51 E-value=0.3 Score=38.69 Aligned_cols=18 Identities=11% Similarity=0.041 Sum_probs=16.0
Q ss_pred CCCCEEEECCCCCchHHH
Q 017196 68 FERDLCINSPTGSGKTLS 85 (375)
Q Consensus 68 ~~~~~ii~a~TGsGKTl~ 85 (375)
.+.++++.+++|+|||..
T Consensus 26 ~~~~vll~G~~GtGKt~l 43 (143)
T 3co5_A 26 RTSPVFLTGEAGSPFETV 43 (143)
T ss_dssp CSSCEEEEEETTCCHHHH
T ss_pred CCCcEEEECCCCccHHHH
Confidence 567899999999999974
No 178
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=88.47 E-value=2.6 Score=40.11 Aligned_cols=61 Identities=21% Similarity=0.096 Sum_probs=32.4
Q ss_pred CCEEEECCCCCchHHHhHHHHHHHhhhcccCCceEEEEc--ccHHHHHHHHHHHHHhccccCceEEEeec
Q 017196 70 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVL--PTRDLALQVKDVFAAIAPAVGLSVGLAVG 137 (375)
Q Consensus 70 ~~~ii~a~TGsGKTl~~~l~il~~l~~~~~~~~~~lil~--Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~~ 137 (375)
.-+++.+++|+|||....- +...+... +.+++++. |.+.-+ ...++.++...++.+.....
T Consensus 101 ~vIlivG~~G~GKTTt~~k-LA~~l~~~---G~kVllv~~D~~R~aa---~eqL~~~~~~~gvpv~~~~~ 163 (443)
T 3dm5_A 101 TILLMVGIQGSGKTTTVAK-LARYFQKR---GYKVGVVCSDTWRPGA---YHQLRQLLDRYHIEVFGNPQ 163 (443)
T ss_dssp EEEEEECCTTSSHHHHHHH-HHHHHHTT---TCCEEEEECCCSSTHH---HHHHHHHHGGGTCEEECCTT
T ss_pred eEEEEECcCCCCHHHHHHH-HHHHHHHC---CCeEEEEeCCCcchhH---HHHHHHHHHhcCCcEEecCC
Confidence 4578889999999987533 22333332 23455554 333322 23333444444666554433
No 179
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=87.73 E-value=4.5 Score=39.49 Aligned_cols=99 Identities=14% Similarity=0.164 Sum_probs=64.7
Q ss_pred chHHHhHHHHHHHhhhcccCCceEEEEcccHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHHhhcCccccCccC
Q 017196 81 GKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICY 160 (375)
Q Consensus 81 GKTl~~~l~il~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (375)
.+....+-.+...+... ..+.++||.++|+.-++.+...++..... ++.+..++|+.+......
T Consensus 320 ~~~~~~~~~l~~~~~~~-~~~~~~iVF~~s~~~~~~l~~~L~~~~~~-~~~v~~~h~~~~~~~R~~-------------- 383 (563)
T 3i5x_A 320 NSIFAAVEHIKKQIKER-DSNYKAIIFAPTVKFTSFLCSILKNEFKK-DLPILEFHGKITQNKRTS-------------- 383 (563)
T ss_dssp HHHHHHHHHHHHHHHHT-TTCCEEEEECSCHHHHHHHHHHHHHHHTT-TSCEEEESTTSCHHHHHH--------------
T ss_pred hhHHHHHHHHHHHHhhc-CCCCcEEEEcCcHHHHHHHHHHHHHhccC-CceEEEecCCCCHHHHHH--------------
Confidence 33333333333444332 24458999999999999999999876442 678889999876654422
Q ss_pred CchhHHHhh-cCCCcEEEeCcHHHHHHHhhcCCCCCCCccEEEEecc
Q 017196 161 DPEDVLQEL-QSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDET 206 (375)
Q Consensus 161 ~~~~~~~~~-~~~~~IiV~Tp~~l~~~l~~~~~~~~~~~~~vIiDE~ 206 (375)
..+.. .+..+|+|+|.- +. .++++..+++||.-..
T Consensus 384 ----~~~~f~~g~~~vLvaT~~-----~~--~GiDip~v~~VI~~~~ 419 (563)
T 3i5x_A 384 ----LVKRFKKDESGILVCTDV-----GA--RGMDFPNVHEVLQIGV 419 (563)
T ss_dssp ----HHHHHHHCSSEEEEECGG-----GT--SSCCCTTCCEEEEESC
T ss_pred ----HHHHHhcCCCCEEEEcch-----hh--cCCCcccCCEEEEECC
Confidence 11122 345899999942 22 4688899998886654
No 180
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=86.79 E-value=1.2 Score=43.37 Aligned_cols=40 Identities=23% Similarity=0.163 Sum_probs=26.0
Q ss_pred HHHHhCCCCCccHhhHHHHHHhhCCCCCCCCEEEECCCCCchHHH
Q 017196 41 VALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLS 85 (375)
Q Consensus 41 ~~l~~~g~~~~~~~Q~~~~~~~~~~~~~~~~~ii~a~TGsGKTl~ 85 (375)
..+.+.|. +.+.+..-+...++ .|..++|.+|||||||..
T Consensus 237 ~~l~~~G~--~~~~~l~~l~~~v~---~g~~i~I~GptGSGKTTl 276 (511)
T 2oap_1 237 IDLIEKGT--VPSGVLAYLWLAIE---HKFSAIVVGETASGKTTT 276 (511)
T ss_dssp HHHHHTTS--SCHHHHHHHHHHHH---TTCCEEEEESTTSSHHHH
T ss_pred hhHHhcCC--CCHHHHHHHHHHHh---CCCEEEEECCCCCCHHHH
Confidence 44555562 33444444433443 688899999999999974
No 181
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=86.76 E-value=0.79 Score=41.51 Aligned_cols=26 Identities=27% Similarity=0.451 Sum_probs=18.9
Q ss_pred CCCEEEECCCCCchHHHhHHHHHHHhh
Q 017196 69 ERDLCINSPTGSGKTLSYALPIVQTLS 95 (375)
Q Consensus 69 ~~~~ii~a~TGsGKTl~~~l~il~~l~ 95 (375)
+.++++.+|+|+|||..+. .+...+.
T Consensus 152 ~~~lll~G~~GtGKT~La~-aia~~~~ 177 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLA-AMAHELS 177 (308)
T ss_dssp CCEEEEECSTTSSHHHHHH-HHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH-HHHHHHH
Confidence 5789999999999998643 3333343
No 182
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=86.16 E-value=4.7 Score=39.69 Aligned_cols=82 Identities=15% Similarity=0.168 Sum_probs=58.6
Q ss_pred CCceEEEEcccHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhh-cCCCcEEEe
Q 017196 100 RCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQEL-QSAVDILVA 178 (375)
Q Consensus 100 ~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~IiV~ 178 (375)
.+.++||.++|+.-++.+...++..... ++.+..++|+.+...... ..+.. .+..+|+|+
T Consensus 287 ~~~~~iVF~~t~~~~~~l~~~L~~~~~~-~~~v~~~hg~~~~~~R~~------------------~~~~F~~g~~~vLVa 347 (579)
T 3sqw_A 287 SNYKAIIFAPTVKFTSFLCSILKNEFKK-DLPILEFHGKITQNKRTS------------------LVKRFKKDESGILVC 347 (579)
T ss_dssp TCCEEEEECSSHHHHHHHHHHHHHHHTT-TSCEEEESTTSCHHHHHH------------------HHHHHHHCSSEEEEE
T ss_pred CCCcEEEECCcHHHHHHHHHHHHHhhcC-CCcEEEecCCCCHHHHHH------------------HHHHhhcCCCeEEEE
Confidence 4458999999999999999999876442 678889999876554422 11122 345799999
Q ss_pred CcHHHHHHHhhcCCCCCCCccEEEEecch
Q 017196 179 TPGRLMDHINATRGFTLEHLCYLVVDETD 207 (375)
Q Consensus 179 Tp~~l~~~l~~~~~~~~~~~~~vIiDE~h 207 (375)
|.- +. .++++..+++||.-..-
T Consensus 348 T~~-----~~--~GiDip~v~~VI~~~~p 369 (579)
T 3sqw_A 348 TDV-----GA--RGMDFPNVHEVLQIGVP 369 (579)
T ss_dssp CGG-----GT--SSCCCTTCCEEEEESCC
T ss_pred cch-----hh--cCCCcccCCEEEEcCCC
Confidence 942 22 46888899998876653
No 183
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=85.77 E-value=0.28 Score=39.98 Aligned_cols=19 Identities=21% Similarity=0.204 Sum_probs=15.8
Q ss_pred CCCCEEEECCCCCchHHHh
Q 017196 68 FERDLCINSPTGSGKTLSY 86 (375)
Q Consensus 68 ~~~~~ii~a~TGsGKTl~~ 86 (375)
...++++.+|+|+|||..+
T Consensus 42 ~~~~vll~G~~G~GKT~la 60 (187)
T 2p65_A 42 TKNNPILLGDPGVGKTAIV 60 (187)
T ss_dssp SSCEEEEESCGGGCHHHHH
T ss_pred CCCceEEECCCCCCHHHHH
Confidence 3567999999999999754
No 184
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=85.11 E-value=5.2 Score=41.13 Aligned_cols=19 Identities=37% Similarity=0.557 Sum_probs=16.0
Q ss_pred CCCCEEEECCCCCchHHHh
Q 017196 68 FERDLCINSPTGSGKTLSY 86 (375)
Q Consensus 68 ~~~~~ii~a~TGsGKTl~~ 86 (375)
..+.+++.+|.|||||+.+
T Consensus 237 ~p~GILL~GPPGTGKT~LA 255 (806)
T 3cf2_A 237 PPRGILLYGPPGTGKTLIA 255 (806)
T ss_dssp CCCEEEEECCTTSCHHHHH
T ss_pred CCCeEEEECCCCCCHHHHH
Confidence 3467999999999999853
No 185
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=85.01 E-value=1.4 Score=41.72 Aligned_cols=31 Identities=23% Similarity=0.291 Sum_probs=22.2
Q ss_pred HhhHHHHHHhhCCCCCCCCEEEECCCCCchHHH
Q 017196 53 PVQVAVWQETIGPGLFERDLCINSPTGSGKTLS 85 (375)
Q Consensus 53 ~~Q~~~~~~~~~~~~~~~~~ii~a~TGsGKTl~ 85 (375)
+-+..++..++. ..+.-++|.+|||||||..
T Consensus 153 ~~~~~~L~~l~~--~~ggii~I~GpnGSGKTTl 183 (418)
T 1p9r_A 153 AHNHDNFRRLIK--RPHGIILVTGPTGSGKSTT 183 (418)
T ss_dssp HHHHHHHHHHHT--SSSEEEEEECSTTSCHHHH
T ss_pred HHHHHHHHHHHH--hcCCeEEEECCCCCCHHHH
Confidence 345556666642 3556689999999999974
No 186
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=84.80 E-value=0.62 Score=44.44 Aligned_cols=19 Identities=32% Similarity=0.499 Sum_probs=16.3
Q ss_pred CCCCEEEECCCCCchHHHh
Q 017196 68 FERDLCINSPTGSGKTLSY 86 (375)
Q Consensus 68 ~~~~~ii~a~TGsGKTl~~ 86 (375)
..+.+++.+|.|||||+.+
T Consensus 214 ~prGvLL~GPPGtGKTllA 232 (437)
T 4b4t_L 214 PPKGVLLYGPPGTGKTLLA 232 (437)
T ss_dssp CCCEEEEESCTTSSHHHHH
T ss_pred CCCeEEEECCCCCcHHHHH
Confidence 4578999999999999853
No 187
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=84.74 E-value=1.5 Score=42.00 Aligned_cols=20 Identities=30% Similarity=0.499 Sum_probs=16.8
Q ss_pred CCCCCEEEECCCCCchHHHh
Q 017196 67 LFERDLCINSPTGSGKTLSY 86 (375)
Q Consensus 67 ~~~~~~ii~a~TGsGKTl~~ 86 (375)
..++++++.+|+|+|||..+
T Consensus 61 ~~~~~iLl~GppGtGKT~la 80 (456)
T 2c9o_A 61 MAGRAVLLAGPPGTGKTALA 80 (456)
T ss_dssp CTTCEEEEECCTTSSHHHHH
T ss_pred CCCCeEEEECCCcCCHHHHH
Confidence 34578999999999999865
No 188
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=84.18 E-value=3.3 Score=46.85 Aligned_cols=56 Identities=16% Similarity=0.053 Sum_probs=36.6
Q ss_pred HHHHhh--CCCCCCCCEEEECCCCCchHHHhHHHHHHHhhhcccCCceEEEEcccHHHHHHHH
Q 017196 58 VWQETI--GPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVK 118 (375)
Q Consensus 58 ~~~~~~--~~~~~~~~~ii~a~TGsGKTl~~~l~il~~l~~~~~~~~~~lil~Pt~~L~~Q~~ 118 (375)
.++.++ ..+..++++++.+++|+|||..+.--+.+.+..+ -+++|+.- .++.++++
T Consensus 1068 ~Ld~~lg~ggi~~g~~vll~G~~GtGKT~la~~~~~ea~k~G----e~~~Fit~-ee~~~~L~ 1125 (2050)
T 3cmu_A 1068 SLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREG----KTCAFIDA-EHALDPIY 1125 (2050)
T ss_dssp HHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHHTTT----CCEEEECT-TSCCCHHH
T ss_pred HHHHHhccCCcCCCcEEEEECCCCCCHHHHHHHHHHHHHHcC----CeEEEEEc-cccHHHHH
Confidence 344455 2466889999999999999987655555555443 25777764 34444555
No 189
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=84.12 E-value=1.2 Score=37.43 Aligned_cols=30 Identities=20% Similarity=0.016 Sum_probs=22.7
Q ss_pred HHHHhhC-CCCCCCCEEEECCCCCchHHHhH
Q 017196 58 VWQETIG-PGLFERDLCINSPTGSGKTLSYA 87 (375)
Q Consensus 58 ~~~~~~~-~~~~~~~~ii~a~TGsGKTl~~~ 87 (375)
+++.++. .+..|.-+++.+++|+|||..+.
T Consensus 8 ~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~ 38 (220)
T 2cvh_A 8 SLDSLLGGGFAPGVLTQVYGPYASGKTTLAL 38 (220)
T ss_dssp HHHHHTTSSBCTTSEEEEECSTTSSHHHHHH
T ss_pred HHHHhhcCCCcCCEEEEEECCCCCCHHHHHH
Confidence 4555564 56678889999999999997543
No 190
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=83.94 E-value=1 Score=53.00 Aligned_cols=52 Identities=15% Similarity=0.135 Sum_probs=38.6
Q ss_pred CCHHHHHHHHhCCCCCccHhhHHHHHHhhCCCCCCCCEEEECCCCCchHHHhH
Q 017196 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYA 87 (375)
Q Consensus 35 l~~~i~~~l~~~g~~~~~~~Q~~~~~~~~~~~~~~~~~ii~a~TGsGKTl~~~ 87 (375)
+...+.+.+.+.|+ .|.+.+..-+-.++..+.-.+.+++.||||+|||.++-
T Consensus 873 l~~ai~~~~~~~~L-~~~~~~v~KviQLye~~~vRhGvmlVGp~gsGKTt~~~ 924 (3245)
T 3vkg_A 873 LRKKIQEIAKQRHL-VTKQEWVEKILQLHQILNINHGVMMVGPSGGGKTTSWE 924 (3245)
T ss_dssp HHHHHHHHHHHTTC-CCCHHHHHHHHHHHHHHTTCSEEEEECSSSSSHHHHHH
T ss_pred HHHHHHHHHHHcCC-ccCHHHHHHHHHHHHHHHheeeEEEECCCCCCHHHHHH
Confidence 45667777788897 67777666544555555567789999999999999763
No 191
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=83.87 E-value=0.76 Score=43.68 Aligned_cols=19 Identities=32% Similarity=0.532 Sum_probs=16.3
Q ss_pred CCCCEEEECCCCCchHHHh
Q 017196 68 FERDLCINSPTGSGKTLSY 86 (375)
Q Consensus 68 ~~~~~ii~a~TGsGKTl~~ 86 (375)
..+.+++.+|.|||||+.+
T Consensus 205 ~prGiLL~GPPGtGKT~la 223 (428)
T 4b4t_K 205 PPRGVLLYGPPGTGKTMLV 223 (428)
T ss_dssp CCCEEEEESCTTTTHHHHH
T ss_pred CCceEEEECCCCCCHHHHH
Confidence 4577999999999999853
No 192
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=83.80 E-value=2.8 Score=42.26 Aligned_cols=81 Identities=16% Similarity=0.261 Sum_probs=58.1
Q ss_pred CCceEEEEcccHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhc-CCCcEEEe
Q 017196 100 RCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQ-SAVDILVA 178 (375)
Q Consensus 100 ~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~IiV~ 178 (375)
.+.++||.++|+.-++.+...+.+. ++++..++|+........ ..+.+. +..+|+||
T Consensus 438 ~~~~vlVf~~t~~~ae~L~~~L~~~----gi~~~~lh~~~~~~~R~~------------------~~~~f~~g~~~VLva 495 (664)
T 1c4o_A 438 RGERTLVTVLTVRMAEELTSFLVEH----GIRARYLHHELDAFKRQA------------------LIRDLRLGHYDCLVG 495 (664)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTCCHHHHHH------------------HHHHHHTTSCSEEEE
T ss_pred cCCEEEEEECCHHHHHHHHHHHHhc----CCCceeecCCCCHHHHHH------------------HHHHhhcCCceEEEc
Confidence 3458999999999999888888765 678888888765544421 222233 45899999
Q ss_pred CcHHHHHHHhhcCCCCCCCccEEEEecchhh
Q 017196 179 TPGRLMDHINATRGFTLEHLCYLVVDETDRL 209 (375)
Q Consensus 179 Tp~~l~~~l~~~~~~~~~~~~~vIiDE~h~l 209 (375)
|.- + ..++++..+++||+=+++.+
T Consensus 496 T~~-----l--~~GlDip~v~lVI~~d~d~~ 519 (664)
T 1c4o_A 496 INL-----L--REGLDIPEVSLVAILDADKE 519 (664)
T ss_dssp SCC-----C--CTTCCCTTEEEEEETTTTSC
T ss_pred cCh-----h--hcCccCCCCCEEEEeCCccc
Confidence 832 1 24688899999999888754
No 193
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=83.76 E-value=3.1 Score=41.85 Aligned_cols=81 Identities=20% Similarity=0.371 Sum_probs=58.8
Q ss_pred CCceEEEEcccHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhh-cCCCcEEEe
Q 017196 100 RCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQEL-QSAVDILVA 178 (375)
Q Consensus 100 ~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~IiV~ 178 (375)
.+.++||.++|+.-++.+...+.+. ++++..++|+.+...... ..+.+ .+..+|+||
T Consensus 444 ~~~~vlVf~~t~~~ae~L~~~L~~~----gi~~~~lh~~~~~~~R~~------------------~l~~f~~g~~~VLVa 501 (661)
T 2d7d_A 444 RNERVLVTTLTKKMSEDLTDYLKEI----GIKVNYLHSEIKTLERIE------------------IIRDLRLGKYDVLVG 501 (661)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTCCHHHHHH------------------HHHHHHHTSCSEEEE
T ss_pred cCCeEEEEECCHHHHHHHHHHHHhc----CCCeEEEeCCCCHHHHHH------------------HHHHHhcCCeEEEEe
Confidence 3458999999999999888888765 678888888765544422 11222 245899999
Q ss_pred CcHHHHHHHhhcCCCCCCCccEEEEecchhh
Q 017196 179 TPGRLMDHINATRGFTLEHLCYLVVDETDRL 209 (375)
Q Consensus 179 Tp~~l~~~l~~~~~~~~~~~~~vIiDE~h~l 209 (375)
|.- + ..++++..+++||+-+++.+
T Consensus 502 T~~-----l--~~GlDip~v~lVi~~d~d~~ 525 (661)
T 2d7d_A 502 INL-----L--REGLDIPEVSLVAILDADKE 525 (661)
T ss_dssp SCC-----C--STTCCCTTEEEEEETTTTCC
T ss_pred cch-----h--hCCcccCCCCEEEEeCcccc
Confidence 842 1 25688999999999998765
No 194
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=83.62 E-value=0.78 Score=40.21 Aligned_cols=19 Identities=26% Similarity=0.452 Sum_probs=16.3
Q ss_pred CCCCEEEECCCCCchHHHh
Q 017196 68 FERDLCINSPTGSGKTLSY 86 (375)
Q Consensus 68 ~~~~~ii~a~TGsGKTl~~ 86 (375)
.+..+++.+++|+|||..+
T Consensus 28 ~~~~vll~G~~GtGKt~la 46 (265)
T 2bjv_A 28 LDKPVLIIGERGTGKELIA 46 (265)
T ss_dssp SCSCEEEECCTTSCHHHHH
T ss_pred CCCCEEEECCCCCcHHHHH
Confidence 5678999999999999753
No 195
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=83.46 E-value=0.46 Score=44.02 Aligned_cols=19 Identities=42% Similarity=0.538 Sum_probs=16.3
Q ss_pred CCCCEEEECCCCCchHHHh
Q 017196 68 FERDLCINSPTGSGKTLSY 86 (375)
Q Consensus 68 ~~~~~ii~a~TGsGKTl~~ 86 (375)
.+.++++.+|+|+|||..+
T Consensus 50 ~~~~vll~GppGtGKT~la 68 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLA 68 (363)
T ss_dssp CCCCEEEECCTTSSHHHHH
T ss_pred CCCeEEEECCCCCCHHHHH
Confidence 4568999999999999864
No 196
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=83.30 E-value=1.1 Score=36.33 Aligned_cols=18 Identities=22% Similarity=0.283 Sum_probs=15.4
Q ss_pred CCCEEEECCCCCchHHHh
Q 017196 69 ERDLCINSPTGSGKTLSY 86 (375)
Q Consensus 69 ~~~~ii~a~TGsGKTl~~ 86 (375)
+..+++.+|+|+|||..+
T Consensus 43 ~~~~ll~G~~G~GKT~l~ 60 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIV 60 (195)
T ss_dssp SCEEEEECCTTSCHHHHH
T ss_pred CCceEEECCCCCCHHHHH
Confidence 467999999999999753
No 197
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=83.29 E-value=2.4 Score=37.48 Aligned_cols=68 Identities=13% Similarity=0.060 Sum_probs=39.6
Q ss_pred cCCcCCCcCCCCccCccccCCCCCCCCCCHHHHHHHHhCCCCCccHhhHHHHHHhhCCCCC-CCCEEEECCCCCchHHHh
Q 017196 8 SMPVLPWMRSPVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLF-ERDLCINSPTGSGKTLSY 86 (375)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~l~~~g~~~~~~~Q~~~~~~~~~~~~~-~~~~ii~a~TGsGKTl~~ 86 (375)
.|....|+..+.+ .++ . -...+.+.|+..|+. |..+-.. +..++..... ...+++.+|.|||||+.+
T Consensus 54 ~~s~~~~i~~~~~---~~~-~------~~n~i~~~l~~qg~~-~~~~~~~-l~~~l~~~~~~~n~~~l~GppgtGKt~~a 121 (267)
T 1u0j_A 54 TKTAPDYLVGQQP---VED-I------SSNRIYKILELNGYD-PQYAASV-FLGWATKKFGKRNTIWLFGPATTGKTNIA 121 (267)
T ss_dssp HCCHHHHHSCSSC---CSC-G------GGCHHHHHHHHTTCC-HHHHHHH-HHHHHTTCSTTCCEEEEECSTTSSHHHHH
T ss_pred cCCHHHHhcccCC---CCC-C------chHHHHHHHHHcCCC-HHHHHHH-HHHHHhCCCCCCcEEEEECCCCCCHHHHH
Confidence 3555567776522 221 1 345788889888873 3333222 3344543212 234899999999999864
Q ss_pred H
Q 017196 87 A 87 (375)
Q Consensus 87 ~ 87 (375)
.
T Consensus 122 ~ 122 (267)
T 1u0j_A 122 E 122 (267)
T ss_dssp H
T ss_pred H
Confidence 3
No 198
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=83.18 E-value=4.6 Score=36.27 Aligned_cols=76 Identities=22% Similarity=0.246 Sum_probs=53.5
Q ss_pred CceEEEEcccHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhh-cCCCcEEEeC
Q 017196 101 CLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQEL-QSAVDILVAT 179 (375)
Q Consensus 101 ~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~IiV~T 179 (375)
+.++||.++|++-++.+...+... ++.+..++|+.+...... ..+.. .+..+|+|+|
T Consensus 28 ~~~~LVF~~t~~~~~~l~~~L~~~----g~~~~~lhg~l~~~~r~~------------------~~~~f~~g~~~vLVaT 85 (300)
T 3i32_A 28 PDRAMVFTRTKAETEEIAQGLLRL----GHPAQALHGDMSQGERER------------------VMGAFRQGEVRVLVAT 85 (300)
T ss_dssp CSSEEEECSSHHHHHHHHHHHHTT----TCCEEEECSCCCTHHHHH------------------HHHHHHHTSCCEEEEC
T ss_pred CCCEEEEECCHHHHHHHHHHHHhC----CCCEEEEeCCCCHHHHHH------------------HHHHhhcCCceEEEEe
Confidence 347999999999998888887654 788999999876555422 11222 3458999999
Q ss_pred cHHHHHHHhhcCCCCCCCccEEEEec
Q 017196 180 PGRLMDHINATRGFTLEHLCYLVVDE 205 (375)
Q Consensus 180 p~~l~~~l~~~~~~~~~~~~~vIiDE 205 (375)
.- +. .++++..+++||.=+
T Consensus 86 ~v-----a~--~Gidi~~v~~VI~~d 104 (300)
T 3i32_A 86 DV-----AA--RGLDIPQVDLVVHYR 104 (300)
T ss_dssp ST-----TT--CSTTCCCCSEEEESS
T ss_pred ch-----hh--cCccccceeEEEEcC
Confidence 32 11 457888888887533
No 199
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=82.82 E-value=0.24 Score=45.15 Aligned_cols=19 Identities=26% Similarity=0.281 Sum_probs=16.5
Q ss_pred CCCCEEEECCCCCchHHHh
Q 017196 68 FERDLCINSPTGSGKTLSY 86 (375)
Q Consensus 68 ~~~~~ii~a~TGsGKTl~~ 86 (375)
.+.++++.+|+|+|||..+
T Consensus 45 ~~~~vll~G~pGtGKT~la 63 (331)
T 2r44_A 45 TGGHILLEGVPGLAKTLSV 63 (331)
T ss_dssp HTCCEEEESCCCHHHHHHH
T ss_pred cCCeEEEECCCCCcHHHHH
Confidence 5779999999999999753
No 200
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=82.59 E-value=3.1 Score=44.77 Aligned_cols=83 Identities=14% Similarity=0.288 Sum_probs=60.3
Q ss_pred CCceEEEEcccHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhh-cCCCcEEEe
Q 017196 100 RCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQEL-QSAVDILVA 178 (375)
Q Consensus 100 ~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~IiV~ 178 (375)
.+.+++|++|+++-++.+.+.+++..+ +.++..++|+.+...... ..... .+..+|+||
T Consensus 811 ~g~qvlvf~~~v~~~~~l~~~L~~~~p--~~~v~~lhg~~~~~eR~~------------------il~~F~~g~~~VLVa 870 (1151)
T 2eyq_A 811 RGGQVYYLYNDVENIQKAAERLAELVP--EARIAIGHGQMRERELER------------------VMNDFHHQRFNVLVC 870 (1151)
T ss_dssp TTCEEEEECCCSSCHHHHHHHHHHHCT--TSCEEECCSSCCHHHHHH------------------HHHHHHTTSCCEEEE
T ss_pred cCCeEEEEECCHHHHHHHHHHHHHhCC--CCeEEEEeCCCCHHHHHH------------------HHHHHHcCCCcEEEE
Confidence 345799999999999999999988765 578889999876544421 12222 345899999
Q ss_pred CcHHHHHHHhhcCCCCCCCccEEEEecchhh
Q 017196 179 TPGRLMDHINATRGFTLEHLCYLVVDETDRL 209 (375)
Q Consensus 179 Tp~~l~~~l~~~~~~~~~~~~~vIiDE~h~l 209 (375)
|. .+. .++++..+++||+..++.+
T Consensus 871 T~-----v~e--~GiDip~v~~VIi~~~~~~ 894 (1151)
T 2eyq_A 871 TT-----IIE--TGIDIPTANTIIIERADHF 894 (1151)
T ss_dssp SS-----TTG--GGSCCTTEEEEEETTTTSS
T ss_pred CC-----cce--eeecccCCcEEEEeCCCCC
Confidence 94 222 3588999999998877644
No 201
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=82.35 E-value=1.1 Score=42.56 Aligned_cols=19 Identities=26% Similarity=0.378 Sum_probs=16.3
Q ss_pred CCCCEEEECCCCCchHHHh
Q 017196 68 FERDLCINSPTGSGKTLSY 86 (375)
Q Consensus 68 ~~~~~ii~a~TGsGKTl~~ 86 (375)
..+.+++.+|.|||||+.+
T Consensus 215 ~prGvLLyGPPGTGKTlLA 233 (437)
T 4b4t_I 215 PPKGVILYGAPGTGKTLLA 233 (437)
T ss_dssp CCSEEEEESSTTTTHHHHH
T ss_pred CCCCCceECCCCchHHHHH
Confidence 4578999999999999853
No 202
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=82.34 E-value=1.7 Score=41.36 Aligned_cols=60 Identities=20% Similarity=0.015 Sum_probs=35.5
Q ss_pred HHHHhhCCCCCCCCEEEECCCCCchHHHhHHHHHHHhhhcccCCceEEEEcccHHHHHHHHHHH
Q 017196 58 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVF 121 (375)
Q Consensus 58 ~~~~~~~~~~~~~~~ii~a~TGsGKTl~~~l~il~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~~ 121 (375)
.++.++..+..|.-++|.|++|+|||.- ++-+...+... .+.+++|+.--. -..|+...+
T Consensus 189 ~LD~~lgGl~~G~l~ii~G~pg~GKT~l-al~ia~~~a~~--~g~~vl~~slE~-~~~~l~~R~ 248 (444)
T 2q6t_A 189 ELDQLIGTLGPGSLNIIAARPAMGKTAF-ALTIAQNAALK--EGVGVGIYSLEM-PAAQLTLRM 248 (444)
T ss_dssp HHHHHHCCCCTTCEEEEEECTTSCHHHH-HHHHHHHHHHT--TCCCEEEEESSS-CHHHHHHHH
T ss_pred hhhhhcCCcCCCcEEEEEeCCCCCHHHH-HHHHHHHHHHh--CCCeEEEEECCC-CHHHHHHHH
Confidence 3555666677888889999999999964 44444333321 122477765421 123444444
No 203
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=82.22 E-value=0.9 Score=39.07 Aligned_cols=55 Identities=18% Similarity=0.086 Sum_probs=31.5
Q ss_pred CCCCCCEEEECCCCCchHHHhHHHHHHHhhhcccCCceEEEEcccHHHHHHHHHHHHHh
Q 017196 66 GLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAI 124 (375)
Q Consensus 66 ~~~~~~~ii~a~TGsGKTl~~~l~il~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~ 124 (375)
+..|.-++|.|++|+|||.-++=-+.+...... ..++|+.-. +-..++.+.+..+
T Consensus 27 l~~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~---~~v~~~s~E-~~~~~~~~~~~~~ 81 (251)
T 2zts_A 27 FPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYG---EPGVFVTLE-ERARDLRREMASF 81 (251)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHHHHHHHHHC---CCEEEEESS-SCHHHHHHHHHTT
T ss_pred CCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhcC---CCceeeccc-CCHHHHHHHHHHc
Confidence 346777899999999999643322333333321 136666532 2244566665544
No 204
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=81.92 E-value=1.9 Score=41.31 Aligned_cols=49 Identities=12% Similarity=0.017 Sum_probs=32.1
Q ss_pred HHHHhhCCCCCCCCEEEECCCCCchHHHhHHHHHHHhhhcccCCceEEEEcc
Q 017196 58 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLP 109 (375)
Q Consensus 58 ~~~~~~~~~~~~~~~ii~a~TGsGKTl~~~l~il~~l~~~~~~~~~~lil~P 109 (375)
.++.++..+..|.-++|.|++|+|||.-+ +-+...+... .+..++|+..
T Consensus 192 ~LD~~~gGl~~G~liiI~G~pG~GKTtl~-l~ia~~~~~~--~g~~Vl~~s~ 240 (454)
T 2r6a_A 192 ELDRMTSGFQRSDLIIVAARPSVGKTAFA-LNIAQNVATK--TNENVAIFSL 240 (454)
T ss_dssp HHHHHHSSBCTTCEEEEECCTTSCHHHHH-HHHHHHHHHH--SSCCEEEEES
T ss_pred HHHhhcCCCCCCCEEEEECCCCCCHHHHH-HHHHHHHHHh--CCCcEEEEEC
Confidence 45666767778888999999999999643 4444433322 1224777763
No 205
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=81.39 E-value=1 Score=36.83 Aligned_cols=20 Identities=20% Similarity=0.318 Sum_probs=16.9
Q ss_pred CCCCCEEEECCCCCchHHHh
Q 017196 67 LFERDLCINSPTGSGKTLSY 86 (375)
Q Consensus 67 ~~~~~~ii~a~TGsGKTl~~ 86 (375)
..++.+++.++.|||||..+
T Consensus 9 ~~~~~i~i~G~~GsGKst~~ 28 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLG 28 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHH
T ss_pred ccCCeEEEEeCCCCCHHHHH
Confidence 35678999999999999854
No 206
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=81.14 E-value=0.82 Score=41.11 Aligned_cols=20 Identities=30% Similarity=0.411 Sum_probs=16.9
Q ss_pred CCCCCEEEECCCCCchHHHh
Q 017196 67 LFERDLCINSPTGSGKTLSY 86 (375)
Q Consensus 67 ~~~~~~ii~a~TGsGKTl~~ 86 (375)
..++.+++.+|+|+|||..+
T Consensus 47 ~~~~~vLL~Gp~GtGKT~la 66 (301)
T 3cf0_A 47 TPSKGVLFYGPPGCGKTLLA 66 (301)
T ss_dssp CCCSEEEEECSSSSSHHHHH
T ss_pred CCCceEEEECCCCcCHHHHH
Confidence 35678999999999999854
No 207
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=81.13 E-value=2.6 Score=38.13 Aligned_cols=61 Identities=10% Similarity=-0.162 Sum_probs=37.0
Q ss_pred HHHHhhCCCCCCCCEEEECCCCCchHHHhHHHHHHHhhhcccCCceEEEEcccHHHHHHHHHHHHH
Q 017196 58 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAA 123 (375)
Q Consensus 58 ~~~~~~~~~~~~~~~ii~a~TGsGKTl~~~l~il~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~ 123 (375)
.++.++..+..|.-++|.|++|+|||.-+ +-+...+... +..++++.-- .-..|+...+..
T Consensus 57 ~LD~~lgGl~~G~l~li~G~pG~GKTtl~-l~ia~~~a~~---g~~vl~~slE-~s~~~l~~R~~~ 117 (315)
T 3bh0_A 57 ELDRMTYGYKRRNFVLIAARPSMGKTAFA-LKQAKNMSDN---DDVVNLHSLE-MGKKENIKRLIV 117 (315)
T ss_dssp HHHHHHSSBCTTCEEEEECCTTSSHHHHH-HHHHHHHHTT---TCEEEEEESS-SCHHHHHHHHHH
T ss_pred HHHhhcCCCCCCcEEEEEeCCCCCHHHHH-HHHHHHHHHc---CCeEEEEECC-CCHHHHHHHHHH
Confidence 45566767778888999999999999643 3333333222 1357777632 223455555544
No 208
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=81.09 E-value=7.9 Score=38.34 Aligned_cols=77 Identities=12% Similarity=0.151 Sum_probs=54.5
Q ss_pred CCceEEEEcccHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcCCCcEEEeC
Q 017196 100 RCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVAT 179 (375)
Q Consensus 100 ~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiV~T 179 (375)
.+.++||.++|+.-++++...++.. ++.+..++|+.+....... +.+...+..+|+|+|
T Consensus 266 ~~~~~IVf~~sr~~~e~la~~L~~~----g~~~~~~h~~l~~~~R~~~-----------------~~~F~~g~~~VlVAT 324 (591)
T 2v1x_A 266 KGQSGIIYCFSQKDSEQVTVSLQNL----GIHAGAYHANLEPEDKTTV-----------------HRKWSANEIQVVVAT 324 (591)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHH-----------------HHHHHTTSSSEEEEC
T ss_pred cCCCeEEEeCcHHHHHHHHHHHHHC----CCCEEEecCCCCHHHHHHH-----------------HHHHHcCCCeEEEEe
Confidence 4457999999999999999988864 7889999998776554321 111223457999999
Q ss_pred cHHHHHHHhhcCCCCCCCccEEEEe
Q 017196 180 PGRLMDHINATRGFTLEHLCYLVVD 204 (375)
Q Consensus 180 p~~l~~~l~~~~~~~~~~~~~vIiD 204 (375)
.. + ..++++.++++||.-
T Consensus 325 ~a-----~--~~GID~p~V~~VI~~ 342 (591)
T 2v1x_A 325 VA-----F--GMGIDKPDVRFVIHH 342 (591)
T ss_dssp TT-----S--CTTCCCSCEEEEEES
T ss_pred ch-----h--hcCCCcccccEEEEe
Confidence 42 1 145778888888753
No 209
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=80.94 E-value=5.8 Score=36.58 Aligned_cols=75 Identities=20% Similarity=0.309 Sum_probs=54.4
Q ss_pred ceEEEEcccHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhc-CCCcEEEeCc
Q 017196 102 LRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQ-SAVDILVATP 180 (375)
Q Consensus 102 ~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~IiV~Tp 180 (375)
.++||.++++.-++.++..+... +..+..++|+........ ..+... +..+|+|+|.
T Consensus 267 ~~~lvf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~------------------~~~~f~~g~~~vlv~T~ 324 (412)
T 3fht_A 267 AQAMIFCHTRKTASWLAAELSKE----GHQVALLSGEMMVEQRAA------------------VIERFREGKEKVLVTTN 324 (412)
T ss_dssp SEEEEECSSHHHHHHHHHHHHHT----TCCCEEECTTSCHHHHHH------------------HHHHHHTTSCSEEEECG
T ss_pred CCEEEEeCCHHHHHHHHHHHHhC----CCeEEEecCCCCHHHHHH------------------HHHHHHCCCCcEEEEcC
Confidence 47999999999999999988865 677888999876555422 222333 4578999994
Q ss_pred HHHHHHHhhcCCCCCCCccEEEEec
Q 017196 181 GRLMDHINATRGFTLEHLCYLVVDE 205 (375)
Q Consensus 181 ~~l~~~l~~~~~~~~~~~~~vIiDE 205 (375)
- +. .++++..+++||.-.
T Consensus 325 ~-----~~--~Gidip~~~~Vi~~~ 342 (412)
T 3fht_A 325 V-----CA--RGIDVEQVSVVINFD 342 (412)
T ss_dssp G-----GT--SSCCCTTEEEEEESS
T ss_pred c-----cc--cCCCccCCCEEEEEC
Confidence 2 22 468888999988543
No 210
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=80.83 E-value=0.36 Score=47.02 Aligned_cols=20 Identities=25% Similarity=0.383 Sum_probs=17.2
Q ss_pred CCCCCCEEEECCCCCchHHH
Q 017196 66 GLFERDLCINSPTGSGKTLS 85 (375)
Q Consensus 66 ~~~~~~~ii~a~TGsGKTl~ 85 (375)
+..+.++++.+|+|+|||..
T Consensus 38 l~~~~~VLL~GpPGtGKT~L 57 (500)
T 3nbx_X 38 ALSGESVFLLGPPGIAKSLI 57 (500)
T ss_dssp HHHTCEEEEECCSSSSHHHH
T ss_pred HhcCCeeEeecCchHHHHHH
Confidence 34678999999999999974
No 211
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=80.44 E-value=9.3 Score=35.99 Aligned_cols=74 Identities=14% Similarity=0.236 Sum_probs=53.8
Q ss_pred eEEEEcccHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhc-CCCcEEEeCcH
Q 017196 103 RALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQ-SAVDILVATPG 181 (375)
Q Consensus 103 ~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~IiV~Tp~ 181 (375)
++||.++|+.-|+.+.+.+.+. ++.+..++|+....+... ..+... +...|+|+|.-
T Consensus 302 ~~lVF~~t~~~a~~l~~~L~~~----~~~~~~lhg~~~~~~R~~------------------~l~~F~~g~~~vLvaT~v 359 (434)
T 2db3_A 302 GTIVFVETKRGADFLASFLSEK----EFPTTSIHGDRLQSQREQ------------------ALRDFKNGSMKVLIATSV 359 (434)
T ss_dssp TEEEECSSHHHHHHHHHHHHHT----TCCEEEESTTSCHHHHHH------------------HHHHHHTSSCSEEEECGG
T ss_pred CEEEEEeCcHHHHHHHHHHHhC----CCCEEEEeCCCCHHHHHH------------------HHHHHHcCCCcEEEEchh
Confidence 4999999999999998888764 678899999876554422 122223 45899999952
Q ss_pred HHHHHHhhcCCCCCCCccEEEEec
Q 017196 182 RLMDHINATRGFTLEHLCYLVVDE 205 (375)
Q Consensus 182 ~l~~~l~~~~~~~~~~~~~vIiDE 205 (375)
+ . +++++..+++||.-+
T Consensus 360 -----~-~-rGlDi~~v~~VI~~d 376 (434)
T 2db3_A 360 -----A-S-RGLDIKNIKHVINYD 376 (434)
T ss_dssp -----G-T-SSCCCTTCCEEEESS
T ss_pred -----h-h-CCCCcccCCEEEEEC
Confidence 2 2 568999999888633
No 212
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=80.43 E-value=6.2 Score=36.08 Aligned_cols=79 Identities=13% Similarity=0.236 Sum_probs=57.0
Q ss_pred CceEEEEcccHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhc-CCCcEEEeC
Q 017196 101 CLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQ-SAVDILVAT 179 (375)
Q Consensus 101 ~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~IiV~T 179 (375)
..++||.++++.-++.++..++.. +..+..++|+.+..+... ..+... +..+|+|+|
T Consensus 243 ~~~~lvf~~~~~~~~~l~~~l~~~----~~~~~~~~~~~~~~~r~~------------------~~~~f~~g~~~vlv~T 300 (395)
T 3pey_A 243 IGSSIIFVATKKTANVLYGKLKSE----GHEVSILHGDLQTQERDR------------------LIDDFREGRSKVLITT 300 (395)
T ss_dssp SSEEEEECSCHHHHHHHHHHHHHT----TCCCEEECTTSCHHHHHH------------------HHHHHHTTSCCEEEEC
T ss_pred CCCEEEEeCCHHHHHHHHHHHHhc----CCcEEEeCCCCCHHHHHH------------------HHHHHHCCCCCEEEEC
Confidence 357999999999999999888765 677888999876554422 222333 457899999
Q ss_pred cHHHHHHHhhcCCCCCCCccEEEEecchh
Q 017196 180 PGRLMDHINATRGFTLEHLCYLVVDETDR 208 (375)
Q Consensus 180 p~~l~~~l~~~~~~~~~~~~~vIiDE~h~ 208 (375)
.- +. .++++..+++||.-+...
T Consensus 301 ~~-----~~--~Gidip~~~~Vi~~~~p~ 322 (395)
T 3pey_A 301 NV-----LA--RGIDIPTVSMVVNYDLPT 322 (395)
T ss_dssp GG-----GS--SSCCCTTEEEEEESSCCB
T ss_pred Ch-----hh--cCCCcccCCEEEEcCCCC
Confidence 42 22 468899999998766553
No 213
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=80.33 E-value=5.9 Score=35.76 Aligned_cols=78 Identities=22% Similarity=0.332 Sum_probs=54.5
Q ss_pred CCceEEEEcccHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhh-cCCCcEEEe
Q 017196 100 RCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQEL-QSAVDILVA 178 (375)
Q Consensus 100 ~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~IiV~ 178 (375)
.+.++||.+++++-++++.+.+++. +..+..++|+.+...... ..+.. .+..+|+|+
T Consensus 237 ~~~~~lvf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~------------------~~~~f~~~~~~vlv~ 294 (367)
T 1hv8_A 237 KEFYGLVFCKTKRDTKELASMLRDI----GFKAGAIHGDLSQSQREK------------------VIRLFKQKKIRILIA 294 (367)
T ss_dssp TTCCEEEECSSHHHHHHHHHHHHHT----TCCEEEECSSSCHHHHHH------------------HHHHHHTTSSSEEEE
T ss_pred CCCcEEEEECCHHHHHHHHHHHHhc----CCCeEEeeCCCCHHHHHH------------------HHHHHHcCCCeEEEE
Confidence 3447999999999999999888865 678889998876554422 12222 345799999
Q ss_pred CcHHHHHHHhhcCCCCCCCccEEEEecc
Q 017196 179 TPGRLMDHINATRGFTLEHLCYLVVDET 206 (375)
Q Consensus 179 Tp~~l~~~l~~~~~~~~~~~~~vIiDE~ 206 (375)
|. .+. .++++..+++||.-+.
T Consensus 295 T~-----~~~--~Gid~~~~~~Vi~~~~ 315 (367)
T 1hv8_A 295 TD-----VMS--RGIDVNDLNCVINYHL 315 (367)
T ss_dssp CT-----THH--HHCCCSCCSEEEESSC
T ss_pred CC-----hhh--cCCCcccCCEEEEecC
Confidence 93 222 2477788888886543
No 214
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=80.25 E-value=1.8 Score=41.03 Aligned_cols=44 Identities=30% Similarity=0.321 Sum_probs=31.2
Q ss_pred CCCCEEEECCCCCchHHHhHHHHHHHhhhcccCCceEEEEcccHHHHH
Q 017196 68 FERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLAL 115 (375)
Q Consensus 68 ~~~~~ii~a~TGsGKTl~~~l~il~~l~~~~~~~~~~lil~Pt~~L~~ 115 (375)
...+++|.|+||+|||... -.++..+... +..++|+=|..++..
T Consensus 52 ~~~h~~i~G~tGsGKs~~~-~~li~~~~~~---g~~viv~Dpkge~~~ 95 (437)
T 1e9r_A 52 EPRHLLVNGATGTGKSVLL-RELAYTGLLR---GDRMVIVDPNGDMLS 95 (437)
T ss_dssp GGGCEEEEECTTSSHHHHH-HHHHHHHHHT---TCEEEEEEETTHHHH
T ss_pred CcceEEEECCCCCCHHHHH-HHHHHHHHHC---CCcEEEEeCCCchhH
Confidence 3568999999999999863 3444444432 236888888888754
No 215
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=80.18 E-value=1.4 Score=39.66 Aligned_cols=19 Identities=26% Similarity=0.433 Sum_probs=16.4
Q ss_pred CCCCEEEECCCCCchHHHh
Q 017196 68 FERDLCINSPTGSGKTLSY 86 (375)
Q Consensus 68 ~~~~~ii~a~TGsGKTl~~ 86 (375)
.+..+++.+++|+|||..+
T Consensus 24 ~~~~vLi~Ge~GtGKt~lA 42 (304)
T 1ojl_A 24 SDATVLIHGDSGTGKELVA 42 (304)
T ss_dssp TTSCEEEESCTTSCHHHHH
T ss_pred CCCcEEEECCCCchHHHHH
Confidence 5678999999999999853
No 216
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=80.03 E-value=0.94 Score=39.35 Aligned_cols=19 Identities=32% Similarity=0.462 Sum_probs=16.0
Q ss_pred CCCCEEEECCCCCchHHHh
Q 017196 68 FERDLCINSPTGSGKTLSY 86 (375)
Q Consensus 68 ~~~~~ii~a~TGsGKTl~~ 86 (375)
....+++.+|+|+|||..+
T Consensus 38 ~~~~vll~G~~GtGKT~la 56 (262)
T 2qz4_A 38 VPKGALLLGPPGCGKTLLA 56 (262)
T ss_dssp CCCEEEEESCTTSSHHHHH
T ss_pred CCceEEEECCCCCCHHHHH
Confidence 4567999999999999854
No 217
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=79.92 E-value=0.89 Score=37.98 Aligned_cols=19 Identities=21% Similarity=0.142 Sum_probs=16.4
Q ss_pred CCCCEEEECCCCCchHHHh
Q 017196 68 FERDLCINSPTGSGKTLSY 86 (375)
Q Consensus 68 ~~~~~ii~a~TGsGKTl~~ 86 (375)
.++.+++.+++|||||..+
T Consensus 24 ~~~~i~l~G~~GsGKsTl~ 42 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLG 42 (199)
T ss_dssp CCCEEEEECCTTSCHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHH
Confidence 5678999999999999854
No 218
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=79.92 E-value=7.6 Score=37.75 Aligned_cols=77 Identities=14% Similarity=0.146 Sum_probs=53.7
Q ss_pred CCceEEEEcccHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHh-hcCCCcEEEe
Q 017196 100 RCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQE-LQSAVDILVA 178 (375)
Q Consensus 100 ~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~IiV~ 178 (375)
.+.++||.++|+.-++++.+.++.. ++.+..++|+.+...... ..+. ..+..+|+|+
T Consensus 235 ~~~~~IVf~~sr~~~e~l~~~L~~~----g~~~~~~h~~l~~~~R~~------------------~~~~f~~g~~~vlVa 292 (523)
T 1oyw_A 235 RGKSGIIYCNSRAKVEDTAARLQSK----GISAAAYHAGLENNVRAD------------------VQEKFQRDDLQIVVA 292 (523)
T ss_dssp TTCCEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHH------------------HHHHHHTTSCSEEEE
T ss_pred CCCcEEEEeCCHHHHHHHHHHHHHC----CCCEEEecCCCCHHHHHH------------------HHHHHHcCCCeEEEE
Confidence 3347999999999999999988865 678999999877654422 1112 2345799999
Q ss_pred CcHHHHHHHhhcCCCCCCCccEEEEec
Q 017196 179 TPGRLMDHINATRGFTLEHLCYLVVDE 205 (375)
Q Consensus 179 Tp~~l~~~l~~~~~~~~~~~~~vIiDE 205 (375)
|.. + ..++++.++++||.-.
T Consensus 293 T~a-----~--~~GiD~p~v~~VI~~~ 312 (523)
T 1oyw_A 293 TVA-----F--GMGINKPNVRFVVHFD 312 (523)
T ss_dssp CTT-----S--CTTTCCTTCCEEEESS
T ss_pred ech-----h--hCCCCccCccEEEEEC
Confidence 952 1 1357777888777533
No 219
>2l8b_A Protein TRAI, DNA helicase I; RECD, hydrolase; NMR {Escherichia coli}
Probab=79.76 E-value=4.6 Score=33.44 Aligned_cols=60 Identities=5% Similarity=-0.073 Sum_probs=39.2
Q ss_pred cHhhHHHHHHhhCCCCCCCCEEEECCCCCchHHHhHHHHHHHhhhcccCCceEEEEcccHHHHHH
Q 017196 52 FPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQ 116 (375)
Q Consensus 52 ~~~Q~~~~~~~~~~~~~~~~~ii~a~TGsGKTl~~~l~il~~l~~~~~~~~~~lil~Pt~~L~~Q 116 (375)
.+-|..++..++. ...+-.+|.++-|++||...+-.++..-.. .+.++.+|+|+..-..+
T Consensus 36 ~~~~~~a~~~l~~--s~~~~~iv~g~ggs~~~~~~~a~L~~~a~~---~Gr~V~vLAp~~~s~~~ 95 (189)
T 2l8b_A 36 TAGYSDAVSVLAQ--DRPSLAIVSGQGGAAGQRERVAELVMMARE---QGREVQIIAADRRSQMN 95 (189)
T ss_dssp HHHHHHHHHHHHH--HSCCEECCBCSSCSHHHHHHHHHHHHHHHH---TTCCEEEECSTTHHHHH
T ss_pred CccchhHHHHHhc--cCCceEEEecccchHHHHHHHHHHHHHHHh---cCeEEEEEcCchHHHHH
Confidence 3568888877763 123457888999999998753333332222 44579999999875443
No 220
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=79.40 E-value=6.5 Score=36.00 Aligned_cols=78 Identities=13% Similarity=0.141 Sum_probs=55.6
Q ss_pred CceEEEEcccHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhh-cCCCcEEEeC
Q 017196 101 CLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQEL-QSAVDILVAT 179 (375)
Q Consensus 101 ~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~IiV~T 179 (375)
+.++||.+++++-++.+.+.+... ++.+..++|+.+...... ..+.. .+...|+|+|
T Consensus 250 ~~~~lvf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~------------------~~~~f~~~~~~vlv~T 307 (391)
T 1xti_A 250 FNQVVIFVKSVQRCIALAQLLVEQ----NFPAIAIHRGMPQEERLS------------------RYQQFKDFQRRILVAT 307 (391)
T ss_dssp CSEEEEECSCHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHH------------------HHHHHHTTCCSEEEES
T ss_pred CCcEEEEeCcHHHHHHHHHHHHhC----CCcEEEEeCCCCHHHHHH------------------HHHHHhcCCCcEEEEC
Confidence 347999999999999998888764 678888998876554422 12222 3457999999
Q ss_pred cHHHHHHHhhcCCCCCCCccEEEEecch
Q 017196 180 PGRLMDHINATRGFTLEHLCYLVVDETD 207 (375)
Q Consensus 180 p~~l~~~l~~~~~~~~~~~~~vIiDE~h 207 (375)
.- + ..++++..+++||.-+.-
T Consensus 308 ~~-----~--~~Gidi~~~~~Vi~~~~p 328 (391)
T 1xti_A 308 NL-----F--GRGMDIERVNIAFNYDMP 328 (391)
T ss_dssp CC-----C--SSCBCCTTEEEEEESSCC
T ss_pred Ch-----h--hcCCCcccCCEEEEeCCC
Confidence 42 1 145888899999876553
No 221
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=79.28 E-value=1.3 Score=38.92 Aligned_cols=20 Identities=30% Similarity=0.365 Sum_probs=16.9
Q ss_pred CCCCCCEEEECCCCCchHHH
Q 017196 66 GLFERDLCINSPTGSGKTLS 85 (375)
Q Consensus 66 ~~~~~~~ii~a~TGsGKTl~ 85 (375)
+..|.-+.|.+|||||||..
T Consensus 22 i~~g~~v~i~Gp~GsGKSTl 41 (261)
T 2eyu_A 22 HRKMGLILVTGPTGSGKSTT 41 (261)
T ss_dssp GCSSEEEEEECSTTCSHHHH
T ss_pred hCCCCEEEEECCCCccHHHH
Confidence 34677899999999999974
No 222
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=79.17 E-value=1.5 Score=51.09 Aligned_cols=52 Identities=21% Similarity=0.135 Sum_probs=36.5
Q ss_pred CCHHHHHHHHhCCCCCccHhhHHHHHHhhCCCCCCCCEEEECCCCCchHHHhH
Q 017196 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYA 87 (375)
Q Consensus 35 l~~~i~~~l~~~g~~~~~~~Q~~~~~~~~~~~~~~~~~ii~a~TGsGKTl~~~ 87 (375)
+.+.+.+.+.+.|+ .+.+.+..-.-.++..+...+.+++.||||||||.++-
T Consensus 890 l~~~i~~~~~~~~l-~~~~~~~~K~~ql~e~~~~r~gvmlvGptgsGKTt~~~ 941 (2695)
T 4akg_A 890 IVQCLKDAGQRSGF-SMSEEFLKKCMQFYYMQKTQQALILVGKAGCGKTATWK 941 (2695)
T ss_dssp HHHHHHHHHHHHTC-CCCHHHHHHHHHHHHHHHHCSEEEEECSTTSSHHHHHH
T ss_pred HHHHHHHHHHHcCC-cccHHHHHHHHHHHHHHHhcceEEEECCCCCCHHHHHH
Confidence 55667777778887 56666644433444433456779999999999999753
No 223
>1w36_B RECB, exodeoxyribonuclease V beta chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 c.52.1.24 PDB: 3k70_B*
Probab=79.06 E-value=4.4 Score=43.78 Aligned_cols=54 Identities=20% Similarity=0.243 Sum_probs=41.4
Q ss_pred CCEEEECCCCCchHHHhHHHHHHHhhhc--------ccCCceEEEEcccHHHHHHHHHHHHH
Q 017196 70 RDLCINSPTGSGKTLSYALPIVQTLSNR--------AVRCLRALVVLPTRDLALQVKDVFAA 123 (375)
Q Consensus 70 ~~~ii~a~TGsGKTl~~~l~il~~l~~~--------~~~~~~~lil~Pt~~L~~Q~~~~~~~ 123 (375)
...+|.|+=|||||.+..--++..+... +....++|+|+=|++-|.++..++.+
T Consensus 17 g~~lV~AsAGSGKT~~L~~r~lrLll~~g~~~~~~~~~~~~~ILvvTFT~aAA~EMr~RI~~ 78 (1180)
T 1w36_B 17 GERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRS 78 (1180)
T ss_dssp SCEEEECCTTSCHHHHHHHHHHHHHTTCSSSSSCSSCCCGGGEEEEESCHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCHHHHHHHHHHHHHhcCCcccccCCCCCHHHEEEEeccHHHHHHHHHHHHH
Confidence 3459999999999998777777777532 12344799999999988888877765
No 224
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=79.01 E-value=2.3 Score=37.90 Aligned_cols=29 Identities=14% Similarity=0.008 Sum_probs=22.2
Q ss_pred HHHHhhCCCCCCCCEEEECCCCCchHHHh
Q 017196 58 VWQETIGPGLFERDLCINSPTGSGKTLSY 86 (375)
Q Consensus 58 ~~~~~~~~~~~~~~~ii~a~TGsGKTl~~ 86 (375)
+++.+.-.+..|.-++|.+++|+|||..+
T Consensus 24 ~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~ 52 (296)
T 1cr0_A 24 GINDKTLGARGGEVIMVTSGSGMGKSTFV 52 (296)
T ss_dssp THHHHHCSBCTTCEEEEEESTTSSHHHHH
T ss_pred HHHHHhcCCCCCeEEEEEeCCCCCHHHHH
Confidence 34455556668888999999999999753
No 225
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=79.00 E-value=1.1 Score=36.88 Aligned_cols=18 Identities=17% Similarity=0.370 Sum_probs=15.5
Q ss_pred CCCCEEEECCCCCchHHH
Q 017196 68 FERDLCINSPTGSGKTLS 85 (375)
Q Consensus 68 ~~~~~ii~a~TGsGKTl~ 85 (375)
.|+-+++.+|+|+|||..
T Consensus 4 ~g~~i~i~GpsGsGKSTL 21 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHI 21 (180)
T ss_dssp CCCEEEEECCTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 567789999999999974
No 226
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=78.91 E-value=1.1 Score=37.79 Aligned_cols=18 Identities=22% Similarity=0.442 Sum_probs=14.9
Q ss_pred CCCCEEEECCCCCchHHH
Q 017196 68 FERDLCINSPTGSGKTLS 85 (375)
Q Consensus 68 ~~~~~ii~a~TGsGKTl~ 85 (375)
.++-++|.+|||+|||..
T Consensus 33 ~g~~ilI~GpsGsGKStL 50 (205)
T 2qmh_A 33 YGLGVLITGDSGVGKSET 50 (205)
T ss_dssp TTEEEEEECCCTTTTHHH
T ss_pred CCEEEEEECCCCCCHHHH
Confidence 456689999999999864
No 227
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=78.90 E-value=1.1 Score=39.96 Aligned_cols=19 Identities=32% Similarity=0.436 Sum_probs=16.1
Q ss_pred CCCCEEEECCCCCchHHHh
Q 017196 68 FERDLCINSPTGSGKTLSY 86 (375)
Q Consensus 68 ~~~~~ii~a~TGsGKTl~~ 86 (375)
.+.++++.+|+|+|||..+
T Consensus 49 ~~~~vll~G~~GtGKT~la 67 (310)
T 1ofh_A 49 TPKNILMIGPTGVGKTEIA 67 (310)
T ss_dssp CCCCEEEECCTTSSHHHHH
T ss_pred CCceEEEECCCCCCHHHHH
Confidence 3568999999999999754
No 228
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=78.85 E-value=1.4 Score=40.50 Aligned_cols=26 Identities=31% Similarity=0.410 Sum_probs=18.9
Q ss_pred CCCCEEEECCCCCchHHHhHHHHHHHh
Q 017196 68 FERDLCINSPTGSGKTLSYALPIVQTL 94 (375)
Q Consensus 68 ~~~~~ii~a~TGsGKTl~~~l~il~~l 94 (375)
.++.+++.+|+|+|||..+ -.+...+
T Consensus 69 ~~~~vLl~GppGtGKT~la-~~la~~l 94 (368)
T 3uk6_A 69 AGRAVLIAGQPGTGKTAIA-MGMAQAL 94 (368)
T ss_dssp TTCEEEEEESTTSSHHHHH-HHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH-HHHHHHh
Confidence 4568999999999999864 3344444
No 229
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=78.69 E-value=1.1 Score=41.03 Aligned_cols=18 Identities=33% Similarity=0.433 Sum_probs=14.8
Q ss_pred CCCEEEECCCCCchHHHh
Q 017196 69 ERDLCINSPTGSGKTLSY 86 (375)
Q Consensus 69 ~~~~ii~a~TGsGKTl~~ 86 (375)
++-++|.+|||+|||..+
T Consensus 40 ~~lIvI~GPTgsGKTtLa 57 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLS 57 (339)
T ss_dssp CEEEEEECSTTSSHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 346889999999999754
No 230
>3u4q_B ATP-dependent helicase/deoxyribonuclease subunit; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_B*
Probab=78.57 E-value=3.3 Score=44.66 Aligned_cols=39 Identities=21% Similarity=0.192 Sum_probs=28.9
Q ss_pred EEECCCCCchHHHhHHHHHHHhhhcccCCceEEEEcccHH
Q 017196 73 CINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRD 112 (375)
Q Consensus 73 ii~a~TGsGKTl~~~l~il~~l~~~~~~~~~~lil~Pt~~ 112 (375)
+|.|+-|||||.+.+--+...+... ..+.++++|||...
T Consensus 5 lV~agAGSGKT~~l~~ri~~ll~~~-~~~~~il~lVP~q~ 43 (1166)
T 3u4q_B 5 FLVGRSGSGKTKLIINSIQDELRRA-PFGKPIIFLVPDQM 43 (1166)
T ss_dssp EEEECTTSSHHHHHHHHHHHHHHHC-TTSSCEEEECCGGG
T ss_pred EEEeCCCCChHHHHHHHHHHHHHhC-CCCCcEEEEecCcc
Confidence 6788999999998666566656553 34457999999764
No 231
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=78.15 E-value=1.1 Score=40.00 Aligned_cols=19 Identities=37% Similarity=0.506 Sum_probs=16.1
Q ss_pred CCCCEEEECCCCCchHHHh
Q 017196 68 FERDLCINSPTGSGKTLSY 86 (375)
Q Consensus 68 ~~~~~ii~a~TGsGKTl~~ 86 (375)
.++.+++.+|+|+|||..+
T Consensus 53 ~~~~vll~Gp~GtGKT~la 71 (297)
T 3b9p_A 53 PAKGLLLFGPPGNGKTLLA 71 (297)
T ss_dssp CCSEEEEESSSSSCHHHHH
T ss_pred CCCeEEEECcCCCCHHHHH
Confidence 3578999999999999854
No 232
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=78.15 E-value=4.4 Score=45.16 Aligned_cols=61 Identities=16% Similarity=0.117 Sum_probs=36.8
Q ss_pred HHHHhhC--CCCCCCCEEEECCCCCchHHHhHHHHHHHhhhcccCCceEEEEcccHHHHHHHHHHHHHhc
Q 017196 58 VWQETIG--PGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIA 125 (375)
Q Consensus 58 ~~~~~~~--~~~~~~~~ii~a~TGsGKTl~~~l~il~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~ 125 (375)
+++..+. .+..|+-+.|.+|.|||||..+ ++++....+. +..++++.+-.+|... + ++.++
T Consensus 1418 ~lD~~lg~gG~prg~~iei~g~~~sGkttl~-~~~~a~~~~~---g~~~~~i~~e~~~~~~-~--~~~~G 1480 (1706)
T 3cmw_A 1418 SLDIALGAGGLPMGRIVEIYGPESSGKTTLT-LQVIAAAQRE---GKTCAFIDAEHALDPI-Y--ARKLG 1480 (1706)
T ss_dssp HHHHHTSSSSEETTSEEEEECSTTSSHHHHH-HHHHHHHHHT---TCCEEEECTTSCCCHH-H--HHHTT
T ss_pred HHHHhcCCCCCCCCCEEEEEcCCCCCHHHHH-HHHHHHHHhc---CCeEEEEecCCCCCHH-H--HHHcC
Confidence 3444443 3446677999999999999864 4455444333 2257777775555433 3 55543
No 233
>3foj_A Uncharacterized protein; protein SSP1007, structural genomics, PSI-2, protein structure initiative; 1.60A {Staphylococcus saprophyticus subsp}
Probab=77.82 E-value=2.5 Score=30.84 Aligned_cols=37 Identities=11% Similarity=0.196 Sum_probs=31.8
Q ss_pred CCeEEEEcCChhhHHHHHHHHHHhcCCcceEEeccccccc
Q 017196 332 EEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQ 371 (375)
Q Consensus 332 ~~k~lIF~~s~~~a~~l~~~L~~~g~~~~~~~~lh~~~~~ 371 (375)
..++++||.+-..+...+..|+..| +++..+.||+..
T Consensus 56 ~~~ivvyC~~g~rs~~a~~~L~~~G---~~v~~l~GG~~~ 92 (100)
T 3foj_A 56 NETYYIICKAGGRSAQVVQYLEQNG---VNAVNVEGGMDE 92 (100)
T ss_dssp TSEEEEECSSSHHHHHHHHHHHTTT---CEEEEETTHHHH
T ss_pred CCcEEEEcCCCchHHHHHHHHHHCC---CCEEEecccHHH
Confidence 4589999999999999999999554 789999998864
No 234
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=77.79 E-value=0.35 Score=43.42 Aligned_cols=17 Identities=35% Similarity=0.380 Sum_probs=14.7
Q ss_pred CCEEEECCCCCchHHHh
Q 017196 70 RDLCINSPTGSGKTLSY 86 (375)
Q Consensus 70 ~~~ii~a~TGsGKTl~~ 86 (375)
..+++.+|+|+|||..+
T Consensus 48 ~~~ll~G~~GtGKt~la 64 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELA 64 (311)
T ss_dssp EEEEEESCSSSSHHHHH
T ss_pred eEEEEECCCCcCHHHHH
Confidence 36899999999999864
No 235
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=77.67 E-value=7.9 Score=35.60 Aligned_cols=76 Identities=14% Similarity=0.214 Sum_probs=54.0
Q ss_pred CceEEEEcccHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhh-cCCCcEEEeC
Q 017196 101 CLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQEL-QSAVDILVAT 179 (375)
Q Consensus 101 ~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~IiV~T 179 (375)
..++||.+++++-++.+.+.++.. ++.+..++|+.+...... ..+.. .+...|+|+|
T Consensus 258 ~~~~lVf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~------------------~~~~f~~g~~~vLv~T 315 (400)
T 1s2m_A 258 INQAIIFCNSTNRVELLAKKITDL----GYSCYYSHARMKQQERNK------------------VFHEFRQGKVRTLVCS 315 (400)
T ss_dssp CSEEEEECSSHHHHHHHHHHHHHH----TCCEEEECTTSCHHHHHH------------------HHHHHHTTSSSEEEES
T ss_pred CCcEEEEEecHHHHHHHHHHHHhc----CCCeEEecCCCCHHHHHH------------------HHHHHhcCCCcEEEEc
Confidence 347999999999999999888765 678888998876554422 12222 3457899999
Q ss_pred cHHHHHHHhhcCCCCCCCccEEEEec
Q 017196 180 PGRLMDHINATRGFTLEHLCYLVVDE 205 (375)
Q Consensus 180 p~~l~~~l~~~~~~~~~~~~~vIiDE 205 (375)
.. +. .++++..+++||.-+
T Consensus 316 ~~-----~~--~Gidip~~~~Vi~~~ 334 (400)
T 1s2m_A 316 DL-----LT--RGIDIQAVNVVINFD 334 (400)
T ss_dssp SC-----SS--SSCCCTTEEEEEESS
T ss_pred Cc-----cc--cCCCccCCCEEEEeC
Confidence 41 11 458888888887644
No 236
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=77.54 E-value=1.4 Score=36.84 Aligned_cols=19 Identities=26% Similarity=0.300 Sum_probs=16.6
Q ss_pred CCCCCEEEECCCCCchHHH
Q 017196 67 LFERDLCINSPTGSGKTLS 85 (375)
Q Consensus 67 ~~~~~~ii~a~TGsGKTl~ 85 (375)
..|+-+++++|+|+|||..
T Consensus 10 ~~~~~i~l~G~sGsGKsTl 28 (204)
T 2qor_A 10 ARIPPLVVCGPSGVGKGTL 28 (204)
T ss_dssp CCCCCEEEECCTTSCHHHH
T ss_pred ccCCEEEEECCCCCCHHHH
Confidence 4678899999999999974
No 237
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=77.54 E-value=1.2 Score=37.38 Aligned_cols=18 Identities=28% Similarity=0.536 Sum_probs=14.6
Q ss_pred CCCCEEEECCCCCchHHH
Q 017196 68 FERDLCINSPTGSGKTLS 85 (375)
Q Consensus 68 ~~~~~ii~a~TGsGKTl~ 85 (375)
.|+-+.|.+|+|+|||..
T Consensus 3 ~g~~i~lvGpsGaGKSTL 20 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTL 20 (198)
T ss_dssp --CCEEEECCTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 467799999999999974
No 238
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=77.36 E-value=2.4 Score=41.22 Aligned_cols=19 Identities=26% Similarity=0.354 Sum_probs=16.1
Q ss_pred CCCCEEEECCCCCchHHHh
Q 017196 68 FERDLCINSPTGSGKTLSY 86 (375)
Q Consensus 68 ~~~~~ii~a~TGsGKTl~~ 86 (375)
.+.+++|.++||||||.+.
T Consensus 166 ~~pHlLIaG~TGSGKSt~L 184 (512)
T 2ius_A 166 KMPHLLVAGTTGSGASVGV 184 (512)
T ss_dssp GSCSEEEECCTTSSHHHHH
T ss_pred cCceEEEECCCCCCHHHHH
Confidence 4568999999999999764
No 239
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=77.36 E-value=1.1 Score=36.67 Aligned_cols=19 Identities=21% Similarity=0.230 Sum_probs=15.8
Q ss_pred CCCEEEECCCCCchHHHhH
Q 017196 69 ERDLCINSPTGSGKTLSYA 87 (375)
Q Consensus 69 ~~~~ii~a~TGsGKTl~~~ 87 (375)
.+.+++.+++|||||..+-
T Consensus 5 ~~~i~l~G~~GsGKst~a~ 23 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGS 23 (185)
T ss_dssp CCEEEEECSTTSSHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHH
Confidence 4679999999999998643
No 240
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=77.26 E-value=2.9 Score=39.87 Aligned_cols=60 Identities=10% Similarity=-0.165 Sum_probs=36.3
Q ss_pred HHHHhhCCCCCCCCEEEECCCCCchHHHhHHHHHHHhhhcccCCceEEEEcccHHHHHHHHHHHH
Q 017196 58 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFA 122 (375)
Q Consensus 58 ~~~~~~~~~~~~~~~ii~a~TGsGKTl~~~l~il~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~~~ 122 (375)
.++.++..+..|.-++|.|++|+|||.-+ +-+...+... +.+++|+.-- .-..|+...+.
T Consensus 186 ~LD~~lgGl~~G~liiIaG~pG~GKTtla-l~ia~~~a~~---g~~vl~fSlE-ms~~ql~~R~~ 245 (444)
T 3bgw_A 186 ELDRMTYGYKRRNFVLIAARPSMGKTAFA-LKQAKNMSDN---DDVVNLHSLE-MGKKENIKRLI 245 (444)
T ss_dssp HHHHHHSSBCSSCEEEEEECSSSSHHHHH-HHHHHHHHHT---TCEEEEECSS-SCTTHHHHHHH
T ss_pred HHHhhcCCCCCCcEEEEEeCCCCChHHHH-HHHHHHHHHc---CCEEEEEECC-CCHHHHHHHHH
Confidence 45566766777888999999999999644 4343333322 2357777632 22334444444
No 241
>1wv9_A Rhodanese homolog TT1651; CDC25, phosphatase, sulfurtransferase, structural genomics, NPPSFA; 2.00A {Thermus thermophilus}
Probab=77.13 E-value=2.9 Score=30.02 Aligned_cols=36 Identities=8% Similarity=0.009 Sum_probs=31.4
Q ss_pred CeEEEEcCChhhHHHHHHHHHHhcCCcceEEeccccccc
Q 017196 333 EKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQ 371 (375)
Q Consensus 333 ~k~lIF~~s~~~a~~l~~~L~~~g~~~~~~~~lh~~~~~ 371 (375)
.++++||.+-..+...+..|+..| +++..+.||+..
T Consensus 54 ~~ivvyC~~g~rs~~a~~~L~~~G---~~v~~l~GG~~~ 89 (94)
T 1wv9_A 54 RPLLLVCEKGLLSQVAALYLEAEG---YEAMSLEGGLQA 89 (94)
T ss_dssp SCEEEECSSSHHHHHHHHHHHHHT---CCEEEETTGGGC
T ss_pred CCEEEEcCCCChHHHHHHHHHHcC---CcEEEEcccHHH
Confidence 679999999999999999999766 778889999864
No 242
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=76.90 E-value=1.3 Score=39.76 Aligned_cols=19 Identities=26% Similarity=0.260 Sum_probs=15.4
Q ss_pred CCCCEEEECCCCCchHHHh
Q 017196 68 FERDLCINSPTGSGKTLSY 86 (375)
Q Consensus 68 ~~~~~ii~a~TGsGKTl~~ 86 (375)
..+.+++.+|+|+|||..+
T Consensus 35 ~p~~lLl~GppGtGKT~la 53 (293)
T 3t15_A 35 VPLILGIWGGKGQGKSFQC 53 (293)
T ss_dssp CCSEEEEEECTTSCHHHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 3456889999999999854
No 243
>3eme_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics; 2.00A {Staphylococcus aureus subsp} PDB: 3iwh_A 3mzz_A
Probab=76.83 E-value=2.5 Score=31.00 Aligned_cols=37 Identities=14% Similarity=0.149 Sum_probs=31.6
Q ss_pred CCeEEEEcCChhhHHHHHHHHHHhcCCcceEEeccccccc
Q 017196 332 EEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQ 371 (375)
Q Consensus 332 ~~k~lIF~~s~~~a~~l~~~L~~~g~~~~~~~~lh~~~~~ 371 (375)
..++++||.+-..+...+..|+..| +++..+.||+..
T Consensus 56 ~~~iv~yC~~g~rs~~a~~~L~~~G---~~v~~l~GG~~~ 92 (103)
T 3eme_A 56 NEIYYIVCAGGVRSAKVVEYLEANG---IDAVNVEGGMHA 92 (103)
T ss_dssp TSEEEEECSSSSHHHHHHHHHHTTT---CEEEEETTHHHH
T ss_pred CCeEEEECCCChHHHHHHHHHHHCC---CCeEEeCCCHHH
Confidence 4579999999999999999999555 789999998864
No 244
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=76.48 E-value=1.3 Score=38.50 Aligned_cols=18 Identities=33% Similarity=0.576 Sum_probs=15.1
Q ss_pred CCCEEEECCCCCchHHHh
Q 017196 69 ERDLCINSPTGSGKTLSY 86 (375)
Q Consensus 69 ~~~~ii~a~TGsGKTl~~ 86 (375)
.+.+++.+|+|+|||..+
T Consensus 45 ~~~vll~G~~GtGKT~la 62 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLA 62 (257)
T ss_dssp CCEEEEECCTTSCHHHHH
T ss_pred CCeEEEECcCCCCHHHHH
Confidence 456999999999999753
No 245
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=76.44 E-value=1.4 Score=35.74 Aligned_cols=18 Identities=22% Similarity=0.292 Sum_probs=15.0
Q ss_pred CCCEEEECCCCCchHHHh
Q 017196 69 ERDLCINSPTGSGKTLSY 86 (375)
Q Consensus 69 ~~~~ii~a~TGsGKTl~~ 86 (375)
++-++++++.|||||..+
T Consensus 3 ~~~i~l~G~~GsGKST~a 20 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIV 20 (178)
T ss_dssp CCEEEEECCTTSSHHHHH
T ss_pred ceEEEEECCCCCCHHHHH
Confidence 456899999999999853
No 246
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=76.40 E-value=1.4 Score=37.18 Aligned_cols=18 Identities=22% Similarity=0.331 Sum_probs=15.5
Q ss_pred CCCCEEEECCCCCchHHH
Q 017196 68 FERDLCINSPTGSGKTLS 85 (375)
Q Consensus 68 ~~~~~ii~a~TGsGKTl~ 85 (375)
.|.-+++.+|+|+|||..
T Consensus 7 ~g~~i~l~GpsGsGKsTl 24 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTV 24 (208)
T ss_dssp CCCEEEEECCTTSCHHHH
T ss_pred CCcEEEEECcCCCCHHHH
Confidence 567789999999999974
No 247
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=76.33 E-value=1.4 Score=36.75 Aligned_cols=18 Identities=22% Similarity=0.329 Sum_probs=15.8
Q ss_pred CCCCEEEECCCCCchHHH
Q 017196 68 FERDLCINSPTGSGKTLS 85 (375)
Q Consensus 68 ~~~~~ii~a~TGsGKTl~ 85 (375)
.|.-+.+.+|+|||||..
T Consensus 5 ~g~~i~l~G~~GsGKSTl 22 (207)
T 2j41_A 5 KGLLIVLSGPSGVGKGTV 22 (207)
T ss_dssp CCCEEEEECSTTSCHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 577889999999999974
No 248
>3gk5_A Uncharacterized rhodanese-related protein TVG0868615; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Thermoplasma volcanium GSS1}
Probab=76.28 E-value=2.5 Score=31.46 Aligned_cols=46 Identities=17% Similarity=0.257 Sum_probs=35.3
Q ss_pred HHHHHHhcC-CCeEEEEcCChhhHHHHHHHHHHhcCCcceEEeccccccc
Q 017196 323 LVALLQSLG-EEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQ 371 (375)
Q Consensus 323 l~~ll~~~~-~~k~lIF~~s~~~a~~l~~~L~~~g~~~~~~~~lh~~~~~ 371 (375)
+.+.+...+ ..++++||.+-..+...+..|+..| +++..+.||+..
T Consensus 45 l~~~~~~l~~~~~ivvyC~~G~rs~~aa~~L~~~G---~~v~~l~GG~~~ 91 (108)
T 3gk5_A 45 LREKWKILERDKKYAVICAHGNRSAAAVEFLSQLG---LNIVDVEGGIQS 91 (108)
T ss_dssp HHHHGGGSCTTSCEEEECSSSHHHHHHHHHHHTTT---CCEEEETTHHHH
T ss_pred HHHHHHhCCCCCeEEEEcCCCcHHHHHHHHHHHcC---CCEEEEcCcHHH
Confidence 333444443 4579999999999999999999555 789999998863
No 249
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=76.27 E-value=1.5 Score=36.08 Aligned_cols=19 Identities=26% Similarity=0.296 Sum_probs=16.2
Q ss_pred CCCCEEEECCCCCchHHHh
Q 017196 68 FERDLCINSPTGSGKTLSY 86 (375)
Q Consensus 68 ~~~~~ii~a~TGsGKTl~~ 86 (375)
.+..+++.++.|||||...
T Consensus 9 ~~~~I~l~G~~GsGKSTv~ 27 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMA 27 (184)
T ss_dssp SSCEEEEECSTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4678999999999999854
No 250
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=76.13 E-value=3 Score=41.04 Aligned_cols=42 Identities=21% Similarity=0.305 Sum_probs=25.9
Q ss_pred CCCEEEECCCCCchHHHhHHHHHHHhhhcccCCceEEEEccc
Q 017196 69 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPT 110 (375)
Q Consensus 69 ~~~~ii~a~TGsGKTl~~~l~il~~l~~~~~~~~~~lil~Pt 110 (375)
..+++|.+.||||||.+.--.++..+.+......+.+++=|-
T Consensus 214 ~pHlLIaG~TGSGKS~~L~tlI~sLl~~~sP~ev~lilIDpK 255 (574)
T 2iut_A 214 MPHLLVAGTTGSGKSVGVNAMLLSILFKSTPSEARLIMIDPK 255 (574)
T ss_dssp SCCEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECSS
T ss_pred CCeeEEECCCCCCHHHHHHHHHHHHHHhCCCcceEEEEeCCC
Confidence 357999999999999864443444444432233445555554
No 251
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=76.08 E-value=1.1 Score=36.79 Aligned_cols=20 Identities=30% Similarity=0.288 Sum_probs=16.8
Q ss_pred CCCCCCEEEECCCCCchHHH
Q 017196 66 GLFERDLCINSPTGSGKTLS 85 (375)
Q Consensus 66 ~~~~~~~ii~a~TGsGKTl~ 85 (375)
+..|.-+++.+|.|||||..
T Consensus 6 i~~g~~i~l~G~~GsGKSTl 25 (191)
T 1zp6_A 6 DLGGNILLLSGHPGSGKSTI 25 (191)
T ss_dssp CCTTEEEEEEECTTSCHHHH
T ss_pred CCCCeEEEEECCCCCCHHHH
Confidence 44677899999999999974
No 252
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=76.07 E-value=7.4 Score=35.99 Aligned_cols=75 Identities=15% Similarity=0.259 Sum_probs=53.7
Q ss_pred ceEEEEcccHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhh-cCCCcEEEeCc
Q 017196 102 LRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQEL-QSAVDILVATP 180 (375)
Q Consensus 102 ~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~IiV~Tp 180 (375)
.++||.++++.-++.+.+.+.+. ++.+..++|+....+... ..+.. .+...|+|+|.
T Consensus 277 ~~~lVf~~~~~~~~~l~~~L~~~----~~~~~~~h~~~~~~~r~~------------------~~~~f~~g~~~vlv~T~ 334 (410)
T 2j0s_A 277 TQAVIFCNTKRKVDWLTEKMREA----NFTVSSMHGDMPQKERES------------------IMKEFRSGASRVLISTD 334 (410)
T ss_dssp SEEEEECSSHHHHHHHHHHHHHT----TCCCEEECTTSCHHHHHH------------------HHHHHHHTSSCEEEECG
T ss_pred CcEEEEEcCHHHHHHHHHHHHhC----CCceEEeeCCCCHHHHHH------------------HHHHHHCCCCCEEEECC
Confidence 37999999999999988888764 678888999876554422 11222 34578999994
Q ss_pred HHHHHHHhhcCCCCCCCccEEEEec
Q 017196 181 GRLMDHINATRGFTLEHLCYLVVDE 205 (375)
Q Consensus 181 ~~l~~~l~~~~~~~~~~~~~vIiDE 205 (375)
- +. .++++..+++||.-+
T Consensus 335 ~-----~~--~Gidi~~v~~Vi~~~ 352 (410)
T 2j0s_A 335 V-----WA--RGLDVPQVSLIINYD 352 (410)
T ss_dssp G-----GS--SSCCCTTEEEEEESS
T ss_pred h-----hh--CcCCcccCCEEEEEC
Confidence 2 22 468888999888644
No 253
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=75.75 E-value=1.5 Score=40.69 Aligned_cols=19 Identities=42% Similarity=0.592 Sum_probs=16.0
Q ss_pred CCCCEEEECCCCCchHHHh
Q 017196 68 FERDLCINSPTGSGKTLSY 86 (375)
Q Consensus 68 ~~~~~ii~a~TGsGKTl~~ 86 (375)
...++++.+|+|+|||..+
T Consensus 71 ~~~~ill~Gp~GtGKT~la 89 (376)
T 1um8_A 71 SKSNILLIGPTGSGKTLMA 89 (376)
T ss_dssp CCCCEEEECCTTSSHHHHH
T ss_pred CCCCEEEECCCCCCHHHHH
Confidence 3567999999999999854
No 254
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=75.71 E-value=1.5 Score=36.50 Aligned_cols=18 Identities=33% Similarity=0.460 Sum_probs=15.6
Q ss_pred CCCCEEEECCCCCchHHH
Q 017196 68 FERDLCINSPTGSGKTLS 85 (375)
Q Consensus 68 ~~~~~ii~a~TGsGKTl~ 85 (375)
.|.-+.+.+|+|||||..
T Consensus 6 ~g~ii~l~Gp~GsGKSTl 23 (205)
T 3tr0_A 6 KANLFIISAPSGAGKTSL 23 (205)
T ss_dssp CCCEEEEECCTTSCHHHH
T ss_pred CCcEEEEECcCCCCHHHH
Confidence 577788999999999974
No 255
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=75.68 E-value=4 Score=37.40 Aligned_cols=60 Identities=15% Similarity=-0.107 Sum_probs=36.1
Q ss_pred HHHHhhCCCCCCCCEEEECCCCCchHHHhHHHHHHHhhhcccCCceEEEEcccHHHHHHHHHHHH
Q 017196 58 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFA 122 (375)
Q Consensus 58 ~~~~~~~~~~~~~~~ii~a~TGsGKTl~~~l~il~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~~~ 122 (375)
.++.++..+..|.-++|.|++|+|||.-+ +-+...+.. .+..++|+.-- .-..|+...+.
T Consensus 35 ~LD~~~gGl~~G~LiiIaG~pG~GKTt~a-l~ia~~~a~---~g~~Vl~fSlE-ms~~ql~~Rll 94 (338)
T 4a1f_A 35 QLDNYTSGFNKGSLVIIGARPSMGKTSLM-MNMVLSALN---DDRGVAVFSLE-MSAEQLALRAL 94 (338)
T ss_dssp HHHHHHCSBCTTCEEEEEECTTSCHHHHH-HHHHHHHHH---TTCEEEEEESS-SCHHHHHHHHH
T ss_pred HHHHHhcCCCCCcEEEEEeCCCCCHHHHH-HHHHHHHHH---cCCeEEEEeCC-CCHHHHHHHHH
Confidence 45556667778888999999999999643 434333332 22357776532 22345555443
No 256
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=75.56 E-value=1.3 Score=35.44 Aligned_cols=16 Identities=31% Similarity=0.279 Sum_probs=13.5
Q ss_pred CEEEECCCCCchHHHh
Q 017196 71 DLCINSPTGSGKTLSY 86 (375)
Q Consensus 71 ~~ii~a~TGsGKTl~~ 86 (375)
.+++.+++|||||..+
T Consensus 3 ~I~l~G~~GsGKsT~a 18 (179)
T 3lw7_A 3 VILITGMPGSGKSEFA 18 (179)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4789999999999853
No 257
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=75.39 E-value=1.6 Score=35.11 Aligned_cols=17 Identities=29% Similarity=0.667 Sum_probs=15.0
Q ss_pred CCCEEEECCCCCchHHH
Q 017196 69 ERDLCINSPTGSGKTLS 85 (375)
Q Consensus 69 ~~~~ii~a~TGsGKTl~ 85 (375)
+..+.+.++.|||||..
T Consensus 4 ~~~i~l~G~~GsGKSTl 20 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTI 20 (173)
T ss_dssp CCCEEEECCTTSCHHHH
T ss_pred CCeEEEECCCCCCHHHH
Confidence 56799999999999974
No 258
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=75.25 E-value=2.9 Score=40.45 Aligned_cols=60 Identities=3% Similarity=-0.131 Sum_probs=35.1
Q ss_pred HHHhhCCCCCCCCEEEECCCCCchHHHhHHHHHHHhhhcccCCceEEEEcccHHHHHHHHHHHH
Q 017196 59 WQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFA 122 (375)
Q Consensus 59 ~~~~~~~~~~~~~~ii~a~TGsGKTl~~~l~il~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~~~ 122 (375)
++.++..+..|.-++|.|++|+|||.-+ +-+...+... .+.+++|+.--. -..|+...+.
T Consensus 232 LD~~lgGl~~G~l~li~G~pG~GKT~la-l~~a~~~a~~--~g~~vl~~s~E~-s~~~l~~r~~ 291 (503)
T 1q57_A 232 INDKTLGARGGEVIMVTSGSGMVMSTFV-RQQALQWGTA--MGKKVGLAMLEE-SVEETAEDLI 291 (503)
T ss_dssp HHHHHCCCCTTCEEEEEESSCHHHHHHH-HHHHHHHTTT--SCCCEEEEESSS-CHHHHHHHHH
T ss_pred hhHhhcccCCCeEEEEeecCCCCchHHH-HHHHHHHHHh--cCCcEEEEeccC-CHHHHHHHHH
Confidence 3445666778888999999999999743 4343333322 123577765322 2345555443
No 259
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=74.84 E-value=13 Score=34.76 Aligned_cols=99 Identities=20% Similarity=0.231 Sum_probs=61.1
Q ss_pred CCCchHHHhHHHHHHHhhhcccCCceEEEEcccHHHHHHHHHHHHHhccccCceEEEeecCC--------chHHHHHHHh
Q 017196 78 TGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQS--------SIADEISELI 149 (375)
Q Consensus 78 TGsGKTl~~~l~il~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~~~~--------~~~~~~~~~~ 149 (375)
..++|... +.-++...... ..+.++||.+++++-++.+.+.++.. ++++..++|.. +....
T Consensus 340 ~~~~k~~~-l~~~l~~~~~~-~~~~k~lVF~~~~~~~~~l~~~L~~~----~~~~~~~~g~~~~~~~~~~~~~~r----- 408 (494)
T 1wp9_A 340 LDHPKMDK-LKEIIREQLQR-KQNSKIIVFTNYRETAKKIVNELVKD----GIKAKRFVGQASKENDRGLSQREQ----- 408 (494)
T ss_dssp CSCHHHHH-HHHHHHHHHHH-CTTCCEEEECSCHHHHHHHHHHHHHT----TCCEEEECCSSCC-------CCHH-----
T ss_pred CCChHHHH-HHHHHHHHhcc-CCCCeEEEEEccHHHHHHHHHHHHHc----CCCcEEEeccccccccccCCHHHH-----
Confidence 44566543 33344433221 13457999999999999888888875 68888999832 22221
Q ss_pred hcCccccCccCCchhHHHhh-cCCCcEEEeCcHHHHHHHhhcCCCCCCCccEEEEecch
Q 017196 150 KRPKLEAGICYDPEDVLQEL-QSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETD 207 (375)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~-~~~~~IiV~Tp~~l~~~l~~~~~~~~~~~~~vIiDE~h 207 (375)
++..+.. .+...|+|+|.. +. .++++..+++||+-+..
T Consensus 409 -------------~~~~~~F~~~~~~vLv~T~~-----~~--~Gldl~~~~~Vi~~d~~ 447 (494)
T 1wp9_A 409 -------------KLILDEFARGEFNVLVATSV-----GE--EGLDVPEVDLVVFYEPV 447 (494)
T ss_dssp -------------HHHHHHHHHTSCSEEEECGG-----GG--GGGGSTTCCEEEESSCC
T ss_pred -------------HHHHHHHhcCCceEEEECCc-----cc--cCCCchhCCEEEEeCCC
Confidence 1112222 245799999932 12 35788888988876554
No 260
>3iwh_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics, C structural genomics of infectious diseases, csgid; 2.00A {Staphylococcus aureus subsp} PDB: 3mzz_A
Probab=74.64 E-value=3.1 Score=30.75 Aligned_cols=36 Identities=11% Similarity=0.085 Sum_probs=30.6
Q ss_pred CCeEEEEcCChhhHHHHHHHHHHhcCCcceEEecccccc
Q 017196 332 EEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQR 370 (375)
Q Consensus 332 ~~k~lIF~~s~~~a~~l~~~L~~~g~~~~~~~~lh~~~~ 370 (375)
..++++||.+-..+...+..|+.. |+++..+.||+.
T Consensus 56 ~~~ivv~C~~G~rS~~aa~~L~~~---G~~~~~l~GG~~ 91 (103)
T 3iwh_A 56 NEIYYIVCAGGVRSAKVVEYLEAN---GIDAVNVEGGMH 91 (103)
T ss_dssp TSEEEEECSSSSHHHHHHHHHHTT---TCEEEEETTHHH
T ss_pred CCeEEEECCCCHHHHHHHHHHHHc---CCCEEEecChHH
Confidence 457999999999999999999954 488888889875
No 261
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=74.51 E-value=1.8 Score=39.33 Aligned_cols=17 Identities=35% Similarity=0.444 Sum_probs=13.8
Q ss_pred CCEEEECCCCCchHHHh
Q 017196 70 RDLCINSPTGSGKTLSY 86 (375)
Q Consensus 70 ~~~ii~a~TGsGKTl~~ 86 (375)
.-++|.+|||+|||..+
T Consensus 4 ~~i~i~GptgsGKt~la 20 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTS 20 (322)
T ss_dssp EEEEEECCTTSCHHHHH
T ss_pred cEEEEECCCcCCHHHHH
Confidence 34788999999999753
No 262
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=74.49 E-value=1 Score=39.49 Aligned_cols=19 Identities=32% Similarity=0.569 Sum_probs=15.7
Q ss_pred CCCCEEEECCCCCchHHHh
Q 017196 68 FERDLCINSPTGSGKTLSY 86 (375)
Q Consensus 68 ~~~~~ii~a~TGsGKTl~~ 86 (375)
..+.+++.+|+|+|||..+
T Consensus 43 ~~~~vll~G~~GtGKT~la 61 (268)
T 2r62_A 43 IPKGVLLVGPPGTGKTLLA 61 (268)
T ss_dssp CCSCCCCBCSSCSSHHHHH
T ss_pred CCceEEEECCCCCcHHHHH
Confidence 3456999999999999854
No 263
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=74.43 E-value=3.6 Score=38.30 Aligned_cols=21 Identities=19% Similarity=0.379 Sum_probs=17.1
Q ss_pred CCCCEEEECCCCCchHHHhHH
Q 017196 68 FERDLCINSPTGSGKTLSYAL 88 (375)
Q Consensus 68 ~~~~~ii~a~TGsGKTl~~~l 88 (375)
.+.+++|.++||+|||...-.
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~ 54 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKM 54 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHH
T ss_pred ccCceEEEcCCCCCHHHHHHH
Confidence 467899999999999976433
No 264
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=74.20 E-value=1.8 Score=39.16 Aligned_cols=17 Identities=35% Similarity=0.491 Sum_probs=13.8
Q ss_pred CCEEEECCCCCchHHHh
Q 017196 70 RDLCINSPTGSGKTLSY 86 (375)
Q Consensus 70 ~~~ii~a~TGsGKTl~~ 86 (375)
.-++|.+|||+|||..+
T Consensus 11 ~~i~i~GptgsGKt~la 27 (316)
T 3foz_A 11 KAIFLMGPTASGKTALA 27 (316)
T ss_dssp EEEEEECCTTSCHHHHH
T ss_pred cEEEEECCCccCHHHHH
Confidence 34788999999999754
No 265
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=73.74 E-value=1.5 Score=36.49 Aligned_cols=15 Identities=33% Similarity=0.722 Sum_probs=13.0
Q ss_pred CEEEECCCCCchHHH
Q 017196 71 DLCINSPTGSGKTLS 85 (375)
Q Consensus 71 ~~ii~a~TGsGKTl~ 85 (375)
=++|+||+|+|||..
T Consensus 3 pIVi~GPSG~GK~Tl 17 (186)
T 1ex7_A 3 PIVISGPSGTGKSTL 17 (186)
T ss_dssp CEEEECCTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 379999999999973
No 266
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=73.69 E-value=4.9 Score=36.20 Aligned_cols=37 Identities=11% Similarity=0.026 Sum_probs=25.6
Q ss_pred HHHHHhhCCCCCCCCEEEECCCCCchHHHhHHHHHHHhh
Q 017196 57 AVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLS 95 (375)
Q Consensus 57 ~~~~~~~~~~~~~~~~ii~a~TGsGKTl~~~l~il~~l~ 95 (375)
.+++.+--.+..|.-+.|.+|+|+|||.. +-++..+.
T Consensus 114 ~vL~~vsl~i~~Ge~vaIvGpsGsGKSTL--l~lL~gl~ 150 (305)
T 2v9p_A 114 NALKLWLKGIPKKNCLAFIGPPNTGKSML--CNSLIHFL 150 (305)
T ss_dssp HHHHHHHHTCTTCSEEEEECSSSSSHHHH--HHHHHHHH
T ss_pred hhhccceEEecCCCEEEEECCCCCcHHHH--HHHHhhhc
Confidence 45555544566888899999999999973 43444444
No 267
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=73.61 E-value=1.5 Score=38.30 Aligned_cols=16 Identities=44% Similarity=0.223 Sum_probs=13.4
Q ss_pred CEEEECCCCCchHHHh
Q 017196 71 DLCINSPTGSGKTLSY 86 (375)
Q Consensus 71 ~~ii~a~TGsGKTl~~ 86 (375)
-++|.+|+|||||..+
T Consensus 3 li~I~G~~GSGKSTla 18 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMA 18 (253)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCcCHHHHH
Confidence 3688999999999754
No 268
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=73.10 E-value=7.7 Score=34.90 Aligned_cols=19 Identities=26% Similarity=0.293 Sum_probs=14.8
Q ss_pred CCCEEEECCCCCchHHHhH
Q 017196 69 ERDLCINSPTGSGKTLSYA 87 (375)
Q Consensus 69 ~~~~ii~a~TGsGKTl~~~ 87 (375)
++-+++.+++|+|||....
T Consensus 104 ~~vi~ivG~~GsGKTTl~~ 122 (306)
T 1vma_A 104 PFVIMVVGVNGTGKTTSCG 122 (306)
T ss_dssp CEEEEEECCTTSSHHHHHH
T ss_pred CeEEEEEcCCCChHHHHHH
Confidence 3457889999999997643
No 269
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=73.03 E-value=1.8 Score=40.20 Aligned_cols=19 Identities=32% Similarity=0.408 Sum_probs=16.4
Q ss_pred CCCCCEEEECCCCCchHHH
Q 017196 67 LFERDLCINSPTGSGKTLS 85 (375)
Q Consensus 67 ~~~~~~ii~a~TGsGKTl~ 85 (375)
..|..++|.+|||||||..
T Consensus 134 ~~g~~i~ivG~~GsGKTTl 152 (372)
T 2ewv_A 134 RKMGLILVTGPTGSGKSTT 152 (372)
T ss_dssp SSSEEEEEECSSSSSHHHH
T ss_pred cCCCEEEEECCCCCCHHHH
Confidence 4677899999999999974
No 270
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=72.99 E-value=2 Score=35.63 Aligned_cols=19 Identities=21% Similarity=0.107 Sum_probs=16.3
Q ss_pred CCCCEEEECCCCCchHHHh
Q 017196 68 FERDLCINSPTGSGKTLSY 86 (375)
Q Consensus 68 ~~~~~ii~a~TGsGKTl~~ 86 (375)
.+..+++.++.|||||...
T Consensus 3 ~~~~I~l~G~~GsGKsT~~ 21 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQC 21 (204)
T ss_dssp CCCEEEEECCTTSSHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHH
Confidence 5677999999999999853
No 271
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=72.89 E-value=2.5 Score=41.97 Aligned_cols=15 Identities=20% Similarity=0.290 Sum_probs=13.9
Q ss_pred CEEEECCCCCchHHH
Q 017196 71 DLCINSPTGSGKTLS 85 (375)
Q Consensus 71 ~~ii~a~TGsGKTl~ 85 (375)
++++.+|+|+|||..
T Consensus 329 ~vLL~GppGtGKT~L 343 (595)
T 3f9v_A 329 HILIIGDPGTAKSQM 343 (595)
T ss_dssp CEEEEESSCCTHHHH
T ss_pred ceEEECCCchHHHHH
Confidence 899999999999974
No 272
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=72.88 E-value=1.7 Score=35.49 Aligned_cols=18 Identities=22% Similarity=0.346 Sum_probs=15.3
Q ss_pred CCCEEEECCCCCchHHHh
Q 017196 69 ERDLCINSPTGSGKTLSY 86 (375)
Q Consensus 69 ~~~~ii~a~TGsGKTl~~ 86 (375)
+..+++.++.|||||..+
T Consensus 3 ~~~I~i~G~~GsGKsT~~ 20 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSS 20 (192)
T ss_dssp CCEEEEECCTTSCHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 567899999999999853
No 273
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=72.82 E-value=1.3 Score=36.17 Aligned_cols=19 Identities=21% Similarity=0.359 Sum_probs=16.0
Q ss_pred CCCCEEEECCCCCchHHHh
Q 017196 68 FERDLCINSPTGSGKTLSY 86 (375)
Q Consensus 68 ~~~~~ii~a~TGsGKTl~~ 86 (375)
.|..+++.++.|||||..+
T Consensus 3 ~g~~I~l~G~~GsGKST~~ 21 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQA 21 (186)
T ss_dssp CEEEEEEECCTTSCHHHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 4667899999999999854
No 274
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=72.65 E-value=2.7 Score=35.79 Aligned_cols=30 Identities=13% Similarity=-0.073 Sum_probs=21.4
Q ss_pred HHHhh-CCCCCCCCEEEECCCCCchHHHhHH
Q 017196 59 WQETI-GPGLFERDLCINSPTGSGKTLSYAL 88 (375)
Q Consensus 59 ~~~~~-~~~~~~~~~ii~a~TGsGKTl~~~l 88 (375)
++.++ ..+..|.-+.+.+|+|+|||..+..
T Consensus 13 LD~~l~ggi~~G~~~~i~G~~GsGKTtl~~~ 43 (243)
T 1n0w_A 13 LDKLLQGGIETGSITEMFGEFRTGKTQICHT 43 (243)
T ss_dssp HHHHTTTSEETTSEEEEECCTTSSHHHHHHH
T ss_pred HHHhhcCCCcCCeEEEEECCCCCcHHHHHHH
Confidence 44445 3455677899999999999975433
No 275
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=72.63 E-value=1.9 Score=39.17 Aligned_cols=18 Identities=28% Similarity=0.377 Sum_probs=15.4
Q ss_pred CCCEEEECCCCCchHHHh
Q 017196 69 ERDLCINSPTGSGKTLSY 86 (375)
Q Consensus 69 ~~~~ii~a~TGsGKTl~~ 86 (375)
..++++.+|+|+|||..+
T Consensus 55 ~~~vll~G~~GtGKT~la 72 (338)
T 3pfi_A 55 LDHILFSGPAGLGKTTLA 72 (338)
T ss_dssp CCCEEEECSTTSSHHHHH
T ss_pred CCeEEEECcCCCCHHHHH
Confidence 357999999999999854
No 276
>3hix_A ALR3790 protein; rhodanese, rhodanese_3, Q8YQN0, Q8YQN0_anAsp, NSR437I, NESG, structural genomics, PSI-2, protein structure initiative; 1.92A {Anabaena SP} PDB: 3k9r_A
Probab=72.28 E-value=3.9 Score=30.18 Aligned_cols=37 Identities=22% Similarity=0.298 Sum_probs=31.1
Q ss_pred CCeEEEEcCChhhHHHHHHHHHHhcCCcc-eEEeccccccc
Q 017196 332 EEKCIVFTSSVESTHRLCTLLNHFGELRI-KIKEYSGLQRQ 371 (375)
Q Consensus 332 ~~k~lIF~~s~~~a~~l~~~L~~~g~~~~-~~~~lh~~~~~ 371 (375)
...+++||.+-..+...+..|...| + ++..+.||+..
T Consensus 52 ~~~ivvyc~~g~rs~~a~~~L~~~G---~~~v~~l~GG~~~ 89 (106)
T 3hix_A 52 SRDIYVYGAGDEQTSQAVNLLRSAG---FEHVSELKGGLAA 89 (106)
T ss_dssp TSCEEEECSSHHHHHHHHHHHHHTT---CSCEEECTTHHHH
T ss_pred CCeEEEEECCCChHHHHHHHHHHcC---CcCEEEecCCHHH
Confidence 4579999999999999999999766 6 48889998763
No 277
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=72.22 E-value=2.1 Score=39.65 Aligned_cols=18 Identities=44% Similarity=0.613 Sum_probs=16.4
Q ss_pred CCCCEEEECCCCCchHHH
Q 017196 68 FERDLCINSPTGSGKTLS 85 (375)
Q Consensus 68 ~~~~~ii~a~TGsGKTl~ 85 (375)
.|..++|.+|||||||..
T Consensus 174 ~G~~i~ivG~sGsGKSTl 191 (361)
T 2gza_A 174 LERVIVVAGETGSGKTTL 191 (361)
T ss_dssp TTCCEEEEESSSSCHHHH
T ss_pred cCCEEEEECCCCCCHHHH
Confidence 788999999999999973
No 278
>3flh_A Uncharacterized protein LP_1913; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.00A {Lactobacillus plantarum} PDB: 3fnj_A 3i3u_A
Probab=72.20 E-value=3.2 Score=31.65 Aligned_cols=37 Identities=14% Similarity=0.159 Sum_probs=31.2
Q ss_pred CCeEEEEcCChhh--HHHHHHHHHHhcCCcceEEeccccccc
Q 017196 332 EEKCIVFTSSVES--THRLCTLLNHFGELRIKIKEYSGLQRQ 371 (375)
Q Consensus 332 ~~k~lIF~~s~~~--a~~l~~~L~~~g~~~~~~~~lh~~~~~ 371 (375)
..++++||.+-.. +...+..|+..| +++..+.||+..
T Consensus 71 ~~~ivvyC~~g~r~~s~~a~~~L~~~G---~~v~~l~GG~~~ 109 (124)
T 3flh_A 71 AKTYVVYDWTGGTTLGKTALLVLLSAG---FEAYELAGALEG 109 (124)
T ss_dssp TSEEEEECSSSSCSHHHHHHHHHHHHT---CEEEEETTHHHH
T ss_pred CCeEEEEeCCCCchHHHHHHHHHHHcC---CeEEEeCCcHHH
Confidence 4579999999887 899999999766 788899998864
No 279
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=72.07 E-value=1.7 Score=35.68 Aligned_cols=19 Identities=16% Similarity=0.114 Sum_probs=15.8
Q ss_pred CCCCEEEECCCCCchHHHh
Q 017196 68 FERDLCINSPTGSGKTLSY 86 (375)
Q Consensus 68 ~~~~~ii~a~TGsGKTl~~ 86 (375)
.+..+++.++.|||||..+
T Consensus 4 ~~~~I~l~G~~GsGKST~~ 22 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLS 22 (193)
T ss_dssp CCEEEEEEESTTSSHHHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 4567899999999999854
No 280
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=72.00 E-value=1.9 Score=39.80 Aligned_cols=19 Identities=32% Similarity=0.461 Sum_probs=16.0
Q ss_pred CCCCEEEECCCCCchHHHh
Q 017196 68 FERDLCINSPTGSGKTLSY 86 (375)
Q Consensus 68 ~~~~~ii~a~TGsGKTl~~ 86 (375)
..+.+++.+|+|+|||..+
T Consensus 116 ~~~~vLl~GppGtGKT~la 134 (357)
T 3d8b_A 116 PPKGILLFGPPGTGKTLIG 134 (357)
T ss_dssp CCSEEEEESSTTSSHHHHH
T ss_pred CCceEEEECCCCCCHHHHH
Confidence 3567999999999999854
No 281
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=71.98 E-value=1.6 Score=39.21 Aligned_cols=18 Identities=33% Similarity=0.362 Sum_probs=15.5
Q ss_pred CCCEEEECCCCCchHHHh
Q 017196 69 ERDLCINSPTGSGKTLSY 86 (375)
Q Consensus 69 ~~~~ii~a~TGsGKTl~~ 86 (375)
...+++.+|+|+|||..+
T Consensus 38 ~~~vll~G~~GtGKT~la 55 (324)
T 1hqc_A 38 LEHLLLFGPPGLGKTTLA 55 (324)
T ss_dssp CCCCEEECCTTCCCHHHH
T ss_pred CCcEEEECCCCCCHHHHH
Confidence 467999999999999753
No 282
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=71.87 E-value=2.2 Score=35.86 Aligned_cols=18 Identities=17% Similarity=0.313 Sum_probs=15.6
Q ss_pred CCCCEEEECCCCCchHHH
Q 017196 68 FERDLCINSPTGSGKTLS 85 (375)
Q Consensus 68 ~~~~~ii~a~TGsGKTl~ 85 (375)
.|+-++|.+|+|+|||..
T Consensus 18 ~g~~ivl~GPSGaGKsTL 35 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHI 35 (197)
T ss_dssp SCCEEEEECCTTSSHHHH
T ss_pred CCCEEEEECcCCCCHHHH
Confidence 567789999999999974
No 283
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=71.52 E-value=7.8 Score=36.27 Aligned_cols=35 Identities=20% Similarity=0.084 Sum_probs=26.2
Q ss_pred ccHhhHHHHHHhhCCCCCCCCEEEECCCCCchHHHh
Q 017196 51 LFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSY 86 (375)
Q Consensus 51 ~~~~Q~~~~~~~~~~~~~~~~~ii~a~TGsGKTl~~ 86 (375)
|...=.++++-++ .+..|+.+.|.+|+|+|||...
T Consensus 157 ~~~tGiraID~~~-pi~rGQr~~IvG~sG~GKTtLl 191 (422)
T 3ice_A 157 TEDLTARVLDLAS-PIGRGQRGLIVAPPKAGKTMLL 191 (422)
T ss_dssp TTHHHHHHHHHHS-CCBTTCEEEEECCSSSSHHHHH
T ss_pred cccccceeeeeee-eecCCcEEEEecCCCCChhHHH
Confidence 4445556666555 5568899999999999999854
No 284
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A
Probab=71.41 E-value=5 Score=36.45 Aligned_cols=55 Identities=22% Similarity=0.204 Sum_probs=45.8
Q ss_pred ccCCCcHHHHHHHHHhc--CCCeEEEEcCChhhHHHHHHHHHHhcCCcceEEeccccccc
Q 017196 314 CESKLKPLYLVALLQSL--GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQ 371 (375)
Q Consensus 314 ~~~~~k~~~l~~ll~~~--~~~k~lIF~~s~~~a~~l~~~L~~~g~~~~~~~~lh~~~~~ 371 (375)
.....|..+|..++... .++++|||++...+.+-+-+++. ..++...-+.|....
T Consensus 105 ~~~SGKf~~L~~LL~~l~~~~~kVLIfsq~t~~LDilE~~l~---~~~~~y~RlDG~~~~ 161 (328)
T 3hgt_A 105 AENSGKFSVLRDLINLVQEYETETAIVCRPGRTMDLLEALLL---GNKVHIKRYDGHSIK 161 (328)
T ss_dssp HHTCHHHHHHHHHHHHHTTSCEEEEEEECSTHHHHHHHHHHT---TSSCEEEESSSCCC-
T ss_pred HHcCccHHHHHHHHHHHHhCCCEEEEEECChhHHHHHHHHHh---cCCCceEeCCCCchh
Confidence 34678999999998865 46799999999999999999999 466999999988543
No 285
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=71.20 E-value=2.2 Score=36.19 Aligned_cols=18 Identities=33% Similarity=0.340 Sum_probs=16.0
Q ss_pred CCCCEEEECCCCCchHHH
Q 017196 68 FERDLCINSPTGSGKTLS 85 (375)
Q Consensus 68 ~~~~~ii~a~TGsGKTl~ 85 (375)
.|+-+.|.+|+|+|||..
T Consensus 22 ~G~~~~lvGpsGsGKSTL 39 (218)
T 1z6g_A 22 NIYPLVICGPSGVGKGTL 39 (218)
T ss_dssp CCCCEEEECSTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 678899999999999974
No 286
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=71.18 E-value=5.2 Score=41.14 Aligned_cols=54 Identities=20% Similarity=0.097 Sum_probs=32.5
Q ss_pred ccCccccCCCCCCCCCCHHHHHHHHhCC---CCCccHhhHHHHHHhhCCCCCCCCEEEECCCCCchHHHh
Q 017196 20 DVSLFEDCPLDHLPCLDPRLKVALQNMG---ISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSY 86 (375)
Q Consensus 20 ~~~~~~~~~~~~~~~l~~~i~~~l~~~g---~~~~~~~Q~~~~~~~~~~~~~~~~~ii~a~TGsGKTl~~ 86 (375)
+...|++++ .-++..+.|...= +..|..++.. .....+.+++.+|.|||||+.+
T Consensus 472 p~v~w~dig------gl~~~k~~l~e~v~~p~~~p~~f~~~-------g~~~~~gvLl~GPPGtGKT~lA 528 (806)
T 3cf2_A 472 PQVTWEDIG------GLEDVKRELQELVQYPVEHPDKFLKF-------GMTPSKGVLFYGPPGCGKTLLA 528 (806)
T ss_dssp CCCCSTTCC------SCHHHHHHHTTTTTTTTTCSGGGSSS-------CCCCCSCCEEESSTTSSHHHHH
T ss_pred CCCCHHHhC------CHHHHHHHHHHHHHhhhhCHHHHHhc-------CCCCCceEEEecCCCCCchHHH
Confidence 345677777 6667777776431 1222222111 2234567999999999999754
No 287
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=71.12 E-value=2.4 Score=36.74 Aligned_cols=16 Identities=31% Similarity=0.536 Sum_probs=13.9
Q ss_pred CCEEEECCCCCchHHH
Q 017196 70 RDLCINSPTGSGKTLS 85 (375)
Q Consensus 70 ~~~ii~a~TGsGKTl~ 85 (375)
+.+++.+|+|+|||..
T Consensus 50 ~g~ll~G~~G~GKTtl 65 (254)
T 1ixz_A 50 KGVLLVGPPGVGKTHL 65 (254)
T ss_dssp SEEEEECCTTSSHHHH
T ss_pred CeEEEECCCCCCHHHH
Confidence 4499999999999974
No 288
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=70.98 E-value=1.9 Score=34.53 Aligned_cols=16 Identities=13% Similarity=0.054 Sum_probs=13.6
Q ss_pred CEEEECCCCCchHHHh
Q 017196 71 DLCINSPTGSGKTLSY 86 (375)
Q Consensus 71 ~~ii~a~TGsGKTl~~ 86 (375)
.+++.++.|||||..+
T Consensus 3 ~i~l~G~~GsGKsT~~ 18 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVA 18 (173)
T ss_dssp EEEEECSSSSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4789999999999854
No 289
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=70.96 E-value=3.9 Score=37.26 Aligned_cols=17 Identities=35% Similarity=0.554 Sum_probs=15.8
Q ss_pred CCCCEEEECCCCCchHH
Q 017196 68 FERDLCINSPTGSGKTL 84 (375)
Q Consensus 68 ~~~~~ii~a~TGsGKTl 84 (375)
.|..+.|.+|||||||.
T Consensus 170 ~g~~v~i~G~~GsGKTT 186 (330)
T 2pt7_A 170 IGKNVIVCGGTGSGKTT 186 (330)
T ss_dssp HTCCEEEEESTTSCHHH
T ss_pred CCCEEEEECCCCCCHHH
Confidence 68899999999999997
No 290
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=70.78 E-value=1.8 Score=36.21 Aligned_cols=23 Identities=30% Similarity=0.190 Sum_probs=18.4
Q ss_pred hCCCCCCCCEEEECCCCCchHHH
Q 017196 63 IGPGLFERDLCINSPTGSGKTLS 85 (375)
Q Consensus 63 ~~~~~~~~~~ii~a~TGsGKTl~ 85 (375)
.+.+..+.-+.|.+++|||||..
T Consensus 15 ~~~~~~~~~i~i~G~~GsGKSTl 37 (207)
T 2qt1_A 15 VPRGSKTFIIGISGVTNSGKTTL 37 (207)
T ss_dssp CCCSCCCEEEEEEESTTSSHHHH
T ss_pred cccCCCCeEEEEECCCCCCHHHH
Confidence 45555677788999999999974
No 291
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=70.54 E-value=2.3 Score=39.32 Aligned_cols=18 Identities=33% Similarity=0.488 Sum_probs=15.2
Q ss_pred CCCCEEEECCCCCchHHH
Q 017196 68 FERDLCINSPTGSGKTLS 85 (375)
Q Consensus 68 ~~~~~ii~a~TGsGKTl~ 85 (375)
.+..++|.+|||||||..
T Consensus 122 ~~g~i~I~GptGSGKTTl 139 (356)
T 3jvv_A 122 PRGLVLVTGPTGSGKSTT 139 (356)
T ss_dssp SSEEEEEECSTTSCHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 455789999999999974
No 292
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=70.30 E-value=2.2 Score=35.47 Aligned_cols=19 Identities=32% Similarity=0.349 Sum_probs=16.0
Q ss_pred CCCCEEEECCCCCchHHHh
Q 017196 68 FERDLCINSPTGSGKTLSY 86 (375)
Q Consensus 68 ~~~~~ii~a~TGsGKTl~~ 86 (375)
.|..+.+.++.|||||..+
T Consensus 28 ~g~~i~l~G~~GsGKSTl~ 46 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIA 46 (200)
T ss_dssp CCCEEEEECCTTSCHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 4677999999999999753
No 293
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=70.13 E-value=18 Score=34.66 Aligned_cols=77 Identities=16% Similarity=0.124 Sum_probs=50.2
Q ss_pred eEEEEcccHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhh-cCCCcEEEeCcH
Q 017196 103 RALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQEL-QSAVDILVATPG 181 (375)
Q Consensus 103 ~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~IiV~Tp~ 181 (375)
..++++.+.+-+..+.+.+.+. +.++..++|+.+...... ..+.. .+..+|+|+|+.
T Consensus 349 ~~~ivf~~~~~~~~l~~~L~~~----~~~v~~~~g~~~~~~r~~------------------i~~~f~~g~~~vLv~T~~ 406 (510)
T 2oca_A 349 NAFVMFKHVSHGKAIFDLIKNE----YDKVYYVSGEVDTETRNI------------------MKTLAENGKGIIIVASYG 406 (510)
T ss_dssp EEEEEESSHHHHHHHHHHHHTT----CSSEEEESSSTTHHHHHH------------------HHHHHHHCCSCEEEEEHH
T ss_pred CeEEEEecHHHHHHHHHHHHHc----CCCeEEEECCCCHHHHHH------------------HHHHHhCCCCCEEEEEcC
Confidence 4555555566666666666654 347888998876544321 11222 355799999965
Q ss_pred HHHHHHhhcCCCCCCCccEEEEecch
Q 017196 182 RLMDHINATRGFTLEHLCYLVVDETD 207 (375)
Q Consensus 182 ~l~~~l~~~~~~~~~~~~~vIiDE~h 207 (375)
.+ .. ++++..+++||+....
T Consensus 407 ~~----~~--GiDip~v~~vi~~~~~ 426 (510)
T 2oca_A 407 VF----ST--GISVKNLHHVVLAHGV 426 (510)
T ss_dssp HH----HH--SCCCCSEEEEEESSCC
T ss_pred hh----hc--ccccccCcEEEEeCCC
Confidence 44 32 4788899999998887
No 294
>3g5j_A Putative ATP/GTP binding protein; N-terminal domain of ATP/GTP binding protein, PSI, MCSG, STR genomics, protein structure initiative; HET: PGE; 1.76A {Clostridium difficile}
Probab=70.11 E-value=4.5 Score=30.88 Aligned_cols=36 Identities=11% Similarity=0.355 Sum_probs=30.6
Q ss_pred CeEEEEc-CChhhHHHHHHHHHHhcCCcceEEeccccccc
Q 017196 333 EKCIVFT-SSVESTHRLCTLLNHFGELRIKIKEYSGLQRQ 371 (375)
Q Consensus 333 ~k~lIF~-~s~~~a~~l~~~L~~~g~~~~~~~~lh~~~~~ 371 (375)
.++++|| .+-..+...+..|+..| +++..+.||+..
T Consensus 90 ~~ivvyC~~~G~rs~~a~~~L~~~G---~~v~~l~GG~~~ 126 (134)
T 3g5j_A 90 DNIVIYCARGGMRSGSIVNLLSSLG---VNVYQLEGGYKA 126 (134)
T ss_dssp SEEEEECSSSSHHHHHHHHHHHHTT---CCCEEETTHHHH
T ss_pred CeEEEEECCCChHHHHHHHHHHHcC---CceEEEeCcHHH
Confidence 6899999 58888999999999666 789999999863
No 295
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=70.04 E-value=2 Score=34.69 Aligned_cols=19 Identities=21% Similarity=0.162 Sum_probs=15.7
Q ss_pred CCCCEEEECCCCCchHHHh
Q 017196 68 FERDLCINSPTGSGKTLSY 86 (375)
Q Consensus 68 ~~~~~ii~a~TGsGKTl~~ 86 (375)
.|..+.+.++.|||||..+
T Consensus 7 ~g~~i~l~G~~GsGKSTl~ 25 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVA 25 (175)
T ss_dssp TSEEEEEECSTTSCHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHH
Confidence 4567899999999999753
No 296
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=70.03 E-value=2.6 Score=38.40 Aligned_cols=17 Identities=29% Similarity=0.345 Sum_probs=14.2
Q ss_pred CCEEEECCCCCchHHHh
Q 017196 70 RDLCINSPTGSGKTLSY 86 (375)
Q Consensus 70 ~~~ii~a~TGsGKTl~~ 86 (375)
+.++|++|||+|||..+
T Consensus 6 ~~i~i~GptGsGKTtla 22 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLA 22 (323)
T ss_dssp EEEEEECCTTSCHHHHH
T ss_pred cEEEEECCCCCCHHHHH
Confidence 35889999999999754
No 297
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=69.96 E-value=2.1 Score=34.52 Aligned_cols=16 Identities=25% Similarity=0.102 Sum_probs=13.6
Q ss_pred CEEEECCCCCchHHHh
Q 017196 71 DLCINSPTGSGKTLSY 86 (375)
Q Consensus 71 ~~ii~a~TGsGKTl~~ 86 (375)
-+++.++.|||||..+
T Consensus 4 ~I~i~G~~GsGKST~a 19 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWA 19 (181)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEecCCCCCHHHHH
Confidence 4789999999999853
No 298
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=69.87 E-value=4.7 Score=36.24 Aligned_cols=17 Identities=29% Similarity=0.382 Sum_probs=14.4
Q ss_pred CCCEEEECCCCCchHHH
Q 017196 69 ERDLCINSPTGSGKTLS 85 (375)
Q Consensus 69 ~~~~ii~a~TGsGKTl~ 85 (375)
+.-+.+.+|+|+|||..
T Consensus 102 g~vi~lvG~nGsGKTTl 118 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTT 118 (304)
T ss_dssp SSEEEEECSTTSSHHHH
T ss_pred CeEEEEECCCCCcHHHH
Confidence 55688899999999985
No 299
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=69.14 E-value=5.8 Score=36.57 Aligned_cols=48 Identities=17% Similarity=0.129 Sum_probs=29.9
Q ss_pred HHHHhhC--CCCCCCCEEEECCCCCchHHHhHHHHHHHhhhcccCCceEEEEcc
Q 017196 58 VWQETIG--PGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLP 109 (375)
Q Consensus 58 ~~~~~~~--~~~~~~~~ii~a~TGsGKTl~~~l~il~~l~~~~~~~~~~lil~P 109 (375)
.++.++. .+..|+-++|.++.|+|||..++ .+...+... +.+++|+..
T Consensus 50 ~LD~~Lg~GGl~~G~ii~I~G~pGsGKTtLal-~la~~~~~~---g~~vlyid~ 99 (356)
T 1u94_A 50 SLDIALGAGGLPMGRIVEIYGPESSGKTTLTL-QVIAAAQRE---GKTCAFIDA 99 (356)
T ss_dssp HHHHHTSSSSEETTSEEEEECSTTSSHHHHHH-HHHHHHHHT---TCCEEEEES
T ss_pred HHHHHhccCCccCCeEEEEECCCCCCHHHHHH-HHHHHHHHC---CCeEEEEeC
Confidence 3455553 45567789999999999997643 333333322 225777765
No 300
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=68.84 E-value=2.6 Score=34.64 Aligned_cols=16 Identities=38% Similarity=0.775 Sum_probs=13.3
Q ss_pred CCEEEECCCCCchHHH
Q 017196 70 RDLCINSPTGSGKTLS 85 (375)
Q Consensus 70 ~~~ii~a~TGsGKTl~ 85 (375)
+-+.+.+|+|+|||..
T Consensus 2 ~ii~l~GpsGaGKsTl 17 (186)
T 3a00_A 2 RPIVISGPSGTGKSTL 17 (186)
T ss_dssp CCEEEESSSSSSHHHH
T ss_pred CEEEEECCCCCCHHHH
Confidence 3478899999999974
No 301
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=68.82 E-value=2 Score=36.50 Aligned_cols=19 Identities=26% Similarity=0.111 Sum_probs=15.4
Q ss_pred CCCCEEEECCCCCchHHHh
Q 017196 68 FERDLCINSPTGSGKTLSY 86 (375)
Q Consensus 68 ~~~~~ii~a~TGsGKTl~~ 86 (375)
....+++.+++|||||..+
T Consensus 6 ~~~~I~l~G~~GsGKsT~a 24 (227)
T 1zd8_A 6 RLLRAVIMGAPGSGKGTVS 24 (227)
T ss_dssp -CCEEEEEECTTSSHHHHH
T ss_pred cCcEEEEECCCCCCHHHHH
Confidence 4467999999999999854
No 302
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=68.51 E-value=5.1 Score=35.98 Aligned_cols=19 Identities=32% Similarity=0.277 Sum_probs=15.2
Q ss_pred CCCCEEEECCCCCchHHHh
Q 017196 68 FERDLCINSPTGSGKTLSY 86 (375)
Q Consensus 68 ~~~~~ii~a~TGsGKTl~~ 86 (375)
.|.-+.+.+|+|+|||...
T Consensus 99 ~g~vi~lvG~nGsGKTTll 117 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSL 117 (302)
T ss_dssp SCEEEEEECCTTSCHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHH
Confidence 3456789999999999853
No 303
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=68.29 E-value=1.5 Score=39.87 Aligned_cols=18 Identities=17% Similarity=0.267 Sum_probs=15.2
Q ss_pred CCCEEEECCCCCchHHHh
Q 017196 69 ERDLCINSPTGSGKTLSY 86 (375)
Q Consensus 69 ~~~~ii~a~TGsGKTl~~ 86 (375)
..++++.+|+|+|||..+
T Consensus 45 ~~~vLl~G~~GtGKT~la 62 (350)
T 1g8p_A 45 IGGVLVFGDRGTGKSTAV 62 (350)
T ss_dssp GCCEEEECCGGGCTTHHH
T ss_pred CceEEEECCCCccHHHHH
Confidence 356999999999999853
No 304
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=68.24 E-value=3.5 Score=34.49 Aligned_cols=19 Identities=21% Similarity=0.246 Sum_probs=15.5
Q ss_pred CCCCCEEEECCCCCchHHH
Q 017196 67 LFERDLCINSPTGSGKTLS 85 (375)
Q Consensus 67 ~~~~~~ii~a~TGsGKTl~ 85 (375)
..|.-+.|.+|+|||||..
T Consensus 20 ~~g~~v~I~G~sGsGKSTl 38 (208)
T 3c8u_A 20 PGRQLVALSGAPGSGKSTL 38 (208)
T ss_dssp CSCEEEEEECCTTSCTHHH
T ss_pred CCCeEEEEECCCCCCHHHH
Confidence 3566788999999999974
No 305
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=68.13 E-value=2.9 Score=38.34 Aligned_cols=16 Identities=44% Similarity=0.403 Sum_probs=13.7
Q ss_pred CEEEECCCCCchHHHh
Q 017196 71 DLCINSPTGSGKTLSY 86 (375)
Q Consensus 71 ~~ii~a~TGsGKTl~~ 86 (375)
-++|.+|||||||..+
T Consensus 9 lI~I~GptgSGKTtla 24 (340)
T 3d3q_A 9 LIVIVGPTASGKTELS 24 (340)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred eEEEECCCcCcHHHHH
Confidence 5789999999999754
No 306
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=67.84 E-value=2.3 Score=34.47 Aligned_cols=19 Identities=21% Similarity=0.125 Sum_probs=15.7
Q ss_pred CCCCEEEECCCCCchHHHh
Q 017196 68 FERDLCINSPTGSGKTLSY 86 (375)
Q Consensus 68 ~~~~~ii~a~TGsGKTl~~ 86 (375)
.|.-+.+.+|+|||||..+
T Consensus 8 ~gei~~l~G~nGsGKSTl~ 26 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFA 26 (171)
T ss_dssp SSEEEEEECCTTSCHHHHH
T ss_pred CCEEEEEECCCCCCHHHHH
Confidence 5667889999999999743
No 307
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=67.81 E-value=5.4 Score=35.70 Aligned_cols=21 Identities=29% Similarity=0.419 Sum_probs=16.4
Q ss_pred CCCCEEEECCCCCchHHHhHH
Q 017196 68 FERDLCINSPTGSGKTLSYAL 88 (375)
Q Consensus 68 ~~~~~ii~a~TGsGKTl~~~l 88 (375)
.++.+++.+++|+|||.....
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~ 124 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAK 124 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHH
Confidence 456788999999999986433
No 308
>3nhv_A BH2092 protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 2.50A {Bacillus halodurans} PDB: 3o3w_A
Probab=67.60 E-value=4.9 Score=31.61 Aligned_cols=37 Identities=16% Similarity=0.275 Sum_probs=30.9
Q ss_pred CCeEEEEcCCh--hhHHHHHHHHHHhcCCcceEEeccccccc
Q 017196 332 EEKCIVFTSSV--ESTHRLCTLLNHFGELRIKIKEYSGLQRQ 371 (375)
Q Consensus 332 ~~k~lIF~~s~--~~a~~l~~~L~~~g~~~~~~~~lh~~~~~ 371 (375)
..++++||.+- ..+...+..|+..| +++..+.||+..
T Consensus 72 ~~~ivvyC~~g~~~rs~~aa~~L~~~G---~~v~~l~GG~~~ 110 (144)
T 3nhv_A 72 EKVIITYCWGPACNGATKAAAKFAQLG---FRVKELIGGIEY 110 (144)
T ss_dssp TSEEEEECSCTTCCHHHHHHHHHHHTT---CEEEEEESHHHH
T ss_pred CCeEEEEECCCCccHHHHHHHHHHHCC---CeEEEeCCcHHH
Confidence 45799999998 68999999999665 789999998763
No 309
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=67.59 E-value=1.9 Score=41.43 Aligned_cols=26 Identities=19% Similarity=0.206 Sum_probs=19.0
Q ss_pred CCCCEEEECCCCCchHHHhHHHHHHHh
Q 017196 68 FERDLCINSPTGSGKTLSYALPIVQTL 94 (375)
Q Consensus 68 ~~~~~ii~a~TGsGKTl~~~l~il~~l 94 (375)
...++++.+|+|+|||..+ -.+...+
T Consensus 200 ~~~~~LL~G~pG~GKT~la-~~la~~l 225 (468)
T 3pxg_A 200 TKNNPVLIGEPGVGKTAIA-EGLAQQI 225 (468)
T ss_dssp SSCEEEEESCTTTTTHHHH-HHHHHHH
T ss_pred CCCCeEEECCCCCCHHHHH-HHHHHHH
Confidence 4468999999999999864 3344444
No 310
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=67.57 E-value=3 Score=35.15 Aligned_cols=28 Identities=21% Similarity=0.054 Sum_probs=20.1
Q ss_pred HHHhh-CCCCCCCCEEEECCCCCchHHHh
Q 017196 59 WQETI-GPGLFERDLCINSPTGSGKTLSY 86 (375)
Q Consensus 59 ~~~~~-~~~~~~~~~ii~a~TGsGKTl~~ 86 (375)
++.++ ..+..|.-+.|.+|+|+|||..+
T Consensus 14 LD~~l~ggi~~G~~~~l~G~nGsGKSTll 42 (231)
T 4a74_A 14 LDKLLGGGIETQAITEVFGEFGSGKTQLA 42 (231)
T ss_dssp HHHHTTSSEESSEEEEEEESTTSSHHHHH
T ss_pred HHhHhcCCCCCCcEEEEECCCCCCHHHHH
Confidence 33444 34456777899999999999743
No 311
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=67.50 E-value=33 Score=35.07 Aligned_cols=78 Identities=14% Similarity=0.133 Sum_probs=53.3
Q ss_pred CceEEEEcccHHHHHHHHHHHHHhcc-------ccCceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhh----
Q 017196 101 CLRALVVLPTRDLALQVKDVFAAIAP-------AVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQEL---- 169 (375)
Q Consensus 101 ~~~~lil~Pt~~L~~Q~~~~~~~~~~-------~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 169 (375)
..++||.+|++.-++++.+.+.+... ..++.+..++|+.+...+.. ..+..
T Consensus 303 ~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~------------------v~~~f~~~~ 364 (773)
T 2xau_A 303 AGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQR------------------IFEPAPESH 364 (773)
T ss_dssp SCEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGG------------------GGSCCCCCS
T ss_pred CCCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHH------------------HHhhccccc
Confidence 34799999999999999888875321 23788999999877655422 11122
Q ss_pred --cCCCcEEEeCcHHHHHHHhhcCCCCCCCccEEEE
Q 017196 170 --QSAVDILVATPGRLMDHINATRGFTLEHLCYLVV 203 (375)
Q Consensus 170 --~~~~~IiV~Tp~~l~~~l~~~~~~~~~~~~~vIi 203 (375)
.+...|+|+|.- +. .++++..+++||-
T Consensus 365 ~~~g~~kVlVAT~i-----ae--~GidIp~v~~VId 393 (773)
T 2xau_A 365 NGRPGRKVVISTNI-----AE--TSLTIDGIVYVVD 393 (773)
T ss_dssp SSSCCEEEEEECTH-----HH--HTCCCTTEEEEEE
T ss_pred CCCCceEEEEeCcH-----HH--hCcCcCCeEEEEe
Confidence 235799999942 22 3478888887664
No 312
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=67.40 E-value=3.1 Score=36.75 Aligned_cols=55 Identities=15% Similarity=0.114 Sum_probs=25.9
Q ss_pred cCccccCCCCCCCCCCHHHHHHHHhCCCCCccHhhHHHHHHhhCCCCCCCCEEEECCCCCchHHH
Q 017196 21 VSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLS 85 (375)
Q Consensus 21 ~~~~~~~~~~~~~~l~~~i~~~l~~~g~~~~~~~Q~~~~~~~~~~~~~~~~~ii~a~TGsGKTl~ 85 (375)
...|+++. -.+++.+.+...=. .|... ...+..+ .+.-.+.+++.+|.|+|||..
T Consensus 6 ~~~~~di~------g~~~~~~~l~~~i~-~~~~~-~~~l~~~--~l~~~~GvlL~Gp~GtGKTtL 60 (274)
T 2x8a_A 6 NVTWADIG------ALEDIREELTMAIL-APVRN-PDQFKAL--GLVTPAGVLLAGPPGCGKTLL 60 (274)
T ss_dssp ------CC------HHHHHHHHHHHHHT-HHHHS-HHHHHHT--TCCCCSEEEEESSTTSCHHHH
T ss_pred CCCHHHhC------CHHHHHHHHHHHHH-HHhhC-HHHHHHc--CCCCCCeEEEECCCCCcHHHH
Confidence 34677776 45556666643211 12111 1222222 122234499999999999974
No 313
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=67.24 E-value=2.6 Score=33.77 Aligned_cols=18 Identities=28% Similarity=0.287 Sum_probs=15.3
Q ss_pred CCEEEECCCCCchHHHhH
Q 017196 70 RDLCINSPTGSGKTLSYA 87 (375)
Q Consensus 70 ~~~ii~a~TGsGKTl~~~ 87 (375)
+++++.++.|||||..+-
T Consensus 8 ~~i~l~G~~GsGKSTva~ 25 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQ 25 (168)
T ss_dssp CEEEEESCTTSSHHHHHH
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 579999999999998643
No 314
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=67.11 E-value=5.7 Score=33.49 Aligned_cols=34 Identities=24% Similarity=0.031 Sum_probs=24.4
Q ss_pred CCCccHhhHHHHHHhhCCCCCCCCEEEECCCCCchHHH
Q 017196 48 ISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLS 85 (375)
Q Consensus 48 ~~~~~~~Q~~~~~~~~~~~~~~~~~ii~a~TGsGKTl~ 85 (375)
+..-+.-|..+++.+ ..|.-+.+.+|.|+|||..
T Consensus 5 i~pk~~g~~~~l~~i----~~Ge~~~liG~nGsGKSTL 38 (208)
T 3b85_A 5 IRPKTLGQKHYVDAI----DTNTIVFGLGPAGSGKTYL 38 (208)
T ss_dssp CCCCSHHHHHHHHHH----HHCSEEEEECCTTSSTTHH
T ss_pred cccCCHhHHHHHHhc----cCCCEEEEECCCCCCHHHH
Confidence 433445566666654 3688889999999999974
No 315
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=66.38 E-value=15 Score=32.63 Aligned_cols=74 Identities=14% Similarity=0.186 Sum_probs=48.7
Q ss_pred CCceEEEEcccHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhh-cCCCcEEEe
Q 017196 100 RCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQEL-QSAVDILVA 178 (375)
Q Consensus 100 ~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~IiV~ 178 (375)
.+.++||.+++++-++.+.+.+. ++..++|+.+...... ..+.. .+..+|+|+
T Consensus 219 ~~~~~lvf~~~~~~~~~l~~~l~--------~~~~~~~~~~~~~r~~------------------~~~~f~~~~~~vlv~ 272 (337)
T 2z0m_A 219 KDKGVIVFVRTRNRVAKLVRLFD--------NAIELRGDLPQSVRNR------------------NIDAFREGEYDMLIT 272 (337)
T ss_dssp CCSSEEEECSCHHHHHHHHTTCT--------TEEEECTTSCHHHHHH------------------HHHHHHTTSCSEEEE
T ss_pred CCCcEEEEEcCHHHHHHHHHHhh--------hhhhhcCCCCHHHHHH------------------HHHHHHcCCCcEEEE
Confidence 34579999999998877666554 3566777766544422 12222 345799999
Q ss_pred CcHHHHHHHhhcCCCCCCCccEEEEecc
Q 017196 179 TPGRLMDHINATRGFTLEHLCYLVVDET 206 (375)
Q Consensus 179 Tp~~l~~~l~~~~~~~~~~~~~vIiDE~ 206 (375)
|. .+. .++++..+++||.-..
T Consensus 273 T~-----~~~--~Gid~~~~~~Vi~~~~ 293 (337)
T 2z0m_A 273 TD-----VAS--RGLDIPLVEKVINFDA 293 (337)
T ss_dssp CH-----HHH--TTCCCCCBSEEEESSC
T ss_pred cC-----ccc--cCCCccCCCEEEEecC
Confidence 93 233 4588889998887544
No 316
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=66.24 E-value=3 Score=35.53 Aligned_cols=18 Identities=22% Similarity=0.377 Sum_probs=15.9
Q ss_pred CCCCEEEECCCCCchHHH
Q 017196 68 FERDLCINSPTGSGKTLS 85 (375)
Q Consensus 68 ~~~~~ii~a~TGsGKTl~ 85 (375)
.|.-+.|.+|+|+|||..
T Consensus 15 ~G~ii~l~GpsGsGKSTL 32 (219)
T 1s96_A 15 QGTLYIVSAPSGAGKSSL 32 (219)
T ss_dssp CCCEEEEECCTTSCHHHH
T ss_pred CCcEEEEECCCCCCHHHH
Confidence 677789999999999984
No 317
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=69.68 E-value=1.2 Score=36.10 Aligned_cols=75 Identities=17% Similarity=0.282 Sum_probs=48.6
Q ss_pred ceEEEEcccHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhh-cCCCcEEEeCc
Q 017196 102 LRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQEL-QSAVDILVATP 180 (375)
Q Consensus 102 ~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~IiV~Tp 180 (375)
.++||.++++.-++.+...++.. ++.+..++|+.+...... ..+.. .+...|+|+|.
T Consensus 31 ~~~iVF~~~~~~~~~l~~~L~~~----~~~~~~~~g~~~~~~r~~------------------~~~~f~~g~~~vLvaT~ 88 (170)
T 2yjt_D 31 TRSIVFVRKRERVHELANWLREA----GINNCYLEGEMVQGKRNE------------------AIKRLTEGRVNVLVATD 88 (170)
Confidence 47999999999988888887764 677888888754333211 11122 23478999993
Q ss_pred HHHHHHHhhcCCCCCCCccEEEEec
Q 017196 181 GRLMDHINATRGFTLEHLCYLVVDE 205 (375)
Q Consensus 181 ~~l~~~l~~~~~~~~~~~~~vIiDE 205 (375)
. +. .++++..+++||.-+
T Consensus 89 ~-----~~--~Gid~~~~~~Vi~~~ 106 (170)
T 2yjt_D 89 V-----AA--RGIDIPDVSHVFNFD 106 (170)
Confidence 1 11 346777777776533
No 318
>1gmx_A GLPE protein; transferase, rhodanese, sulfurtransferase, glycerol metabolism; 1.1A {Escherichia coli} SCOP: c.46.1.3 PDB: 1gn0_A
Probab=66.12 E-value=5 Score=29.59 Aligned_cols=36 Identities=14% Similarity=0.112 Sum_probs=30.4
Q ss_pred CCeEEEEcCChhhHHHHHHHHHHhcCCcc-eEEecccccc
Q 017196 332 EEKCIVFTSSVESTHRLCTLLNHFGELRI-KIKEYSGLQR 370 (375)
Q Consensus 332 ~~k~lIF~~s~~~a~~l~~~L~~~g~~~~-~~~~lh~~~~ 370 (375)
..++++||.+-..+...+..|...| + ++..+.||+.
T Consensus 58 ~~~ivvyc~~g~rs~~a~~~L~~~G---~~~v~~l~GG~~ 94 (108)
T 1gmx_A 58 DTPVMVMCYHGNSSKGAAQYLLQQG---YDVVYSIDGGFE 94 (108)
T ss_dssp TSCEEEECSSSSHHHHHHHHHHHHT---CSSEEEETTHHH
T ss_pred CCCEEEEcCCCchHHHHHHHHHHcC---CceEEEecCCHH
Confidence 4579999999889999999999776 6 4778888875
No 319
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=66.04 E-value=2.6 Score=34.49 Aligned_cols=18 Identities=17% Similarity=0.172 Sum_probs=15.0
Q ss_pred CCCEEEECCCCCchHHHh
Q 017196 69 ERDLCINSPTGSGKTLSY 86 (375)
Q Consensus 69 ~~~~ii~a~TGsGKTl~~ 86 (375)
+..+++.++.|||||..+
T Consensus 3 ~~~I~l~G~~GsGKsT~a 20 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQC 20 (196)
T ss_dssp CEEEEEECCTTSSHHHHH
T ss_pred ceEEEEECCCCCCHHHHH
Confidence 456899999999999854
No 320
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=66.02 E-value=2.6 Score=35.00 Aligned_cols=19 Identities=21% Similarity=0.183 Sum_probs=16.0
Q ss_pred CCCCEEEECCCCCchHHHh
Q 017196 68 FERDLCINSPTGSGKTLSY 86 (375)
Q Consensus 68 ~~~~~ii~a~TGsGKTl~~ 86 (375)
.|.-+.+.++.|||||..+
T Consensus 24 ~g~~i~l~G~sGsGKSTl~ 42 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLA 42 (200)
T ss_dssp CCEEEEEECSTTSSHHHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 5677899999999999753
No 321
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=65.98 E-value=3 Score=35.14 Aligned_cols=19 Identities=21% Similarity=0.310 Sum_probs=15.8
Q ss_pred CCCCEEEECCCCCchHHHh
Q 017196 68 FERDLCINSPTGSGKTLSY 86 (375)
Q Consensus 68 ~~~~~ii~a~TGsGKTl~~ 86 (375)
.+..+++.++.|||||..+
T Consensus 3 ~~~~I~l~G~~GsGKsT~a 21 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQA 21 (220)
T ss_dssp CCCEEEEECCTTSSHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 3567899999999999854
No 322
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=65.86 E-value=2.8 Score=34.40 Aligned_cols=19 Identities=21% Similarity=0.191 Sum_probs=16.1
Q ss_pred CCCCEEEECCCCCchHHHh
Q 017196 68 FERDLCINSPTGSGKTLSY 86 (375)
Q Consensus 68 ~~~~~ii~a~TGsGKTl~~ 86 (375)
.+..+++.++.|||||..+
T Consensus 8 ~~~~I~l~G~~GsGKsT~~ 26 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQC 26 (196)
T ss_dssp TSCEEEEEECTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4567999999999999854
No 323
>3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural genomics consortium domain, ADP, SGC, ATP-binding, DNA-binding, microtubule, MO protein; HET: ADP; 2.30A {Homo sapiens}
Probab=65.76 E-value=2.9 Score=39.08 Aligned_cols=36 Identities=22% Similarity=0.272 Sum_probs=24.5
Q ss_pred ccHhhHHHHHHhh----CCCCCCCCEE--EECCCCCchHHHh
Q 017196 51 LFPVQVAVWQETI----GPGLFERDLC--INSPTGSGKTLSY 86 (375)
Q Consensus 51 ~~~~Q~~~~~~~~----~~~~~~~~~i--i~a~TGsGKTl~~ 86 (375)
+..-|.+.|+... ..+..|.|+. ..+.||||||.+.
T Consensus 75 ~~~tQ~~Vy~~~~~plv~~~l~G~N~tifAYGqTGSGKTyTM 116 (388)
T 3bfn_A 75 ERSTQQDIYAGSVQPILRHLLEGQNASVLAYGPTGAGKTHTM 116 (388)
T ss_dssp TTCCHHHHHHHHTGGGHHHHTTTCCEEEEEESCTTSSHHHHH
T ss_pred CCCCHhHHHHHHHHHHHHHhhcCceeeEeeecCCCCCCCeEe
Confidence 4556888776532 3345787754 4489999999874
No 324
>2hhg_A Hypothetical protein RPA3614; MCSG, structural genomics, rohopseudom palustris, PSI-2, protein structure initiative; 1.20A {Rhodopseudomonas palustris}
Probab=65.69 E-value=5.7 Score=30.74 Aligned_cols=36 Identities=11% Similarity=0.198 Sum_probs=30.7
Q ss_pred CCeEEEEcCChhhHHHHHHHHHHhcCCcce-EEecccccc
Q 017196 332 EEKCIVFTSSVESTHRLCTLLNHFGELRIK-IKEYSGLQR 370 (375)
Q Consensus 332 ~~k~lIF~~s~~~a~~l~~~L~~~g~~~~~-~~~lh~~~~ 370 (375)
..++++||.+-..+...+..|+..| +. +..+.|++.
T Consensus 86 ~~~ivvyC~~G~rs~~a~~~L~~~G---~~~v~~l~GG~~ 122 (139)
T 2hhg_A 86 DKKFVFYCAGGLRSALAAKTAQDMG---LKPVAHIEGGFG 122 (139)
T ss_dssp SSEEEEECSSSHHHHHHHHHHHHHT---CCSEEEETTHHH
T ss_pred CCeEEEECCCChHHHHHHHHHHHcC---CCCeEEecCCHH
Confidence 5589999999999999999999766 64 888999875
No 325
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=65.68 E-value=3.5 Score=36.27 Aligned_cols=16 Identities=31% Similarity=0.536 Sum_probs=13.9
Q ss_pred CCEEEECCCCCchHHH
Q 017196 70 RDLCINSPTGSGKTLS 85 (375)
Q Consensus 70 ~~~ii~a~TGsGKTl~ 85 (375)
+.+++.+|+|+|||..
T Consensus 74 ~gvll~Gp~GtGKTtl 89 (278)
T 1iy2_A 74 KGVLLVGPPGVGKTHL 89 (278)
T ss_dssp CEEEEECCTTSSHHHH
T ss_pred CeEEEECCCcChHHHH
Confidence 3499999999999974
No 326
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=65.57 E-value=2.8 Score=34.01 Aligned_cols=19 Identities=21% Similarity=0.235 Sum_probs=15.9
Q ss_pred CCCCEEEECCCCCchHHHh
Q 017196 68 FERDLCINSPTGSGKTLSY 86 (375)
Q Consensus 68 ~~~~~ii~a~TGsGKTl~~ 86 (375)
.|..+.+.++.|||||..+
T Consensus 4 ~g~~i~l~G~~GsGKST~~ 22 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVS 22 (179)
T ss_dssp CCEEEEEECCTTSSHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 4667899999999999753
No 327
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=65.55 E-value=2.9 Score=34.74 Aligned_cols=18 Identities=22% Similarity=0.294 Sum_probs=15.1
Q ss_pred CCCEEEECCCCCchHHHh
Q 017196 69 ERDLCINSPTGSGKTLSY 86 (375)
Q Consensus 69 ~~~~ii~a~TGsGKTl~~ 86 (375)
...++++++.|||||..+
T Consensus 18 ~~~I~l~G~~GsGKSTla 35 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVG 35 (202)
T ss_dssp SSCEEEECSTTSCHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 346999999999999854
No 328
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=65.36 E-value=3.1 Score=35.12 Aligned_cols=19 Identities=21% Similarity=0.172 Sum_probs=15.8
Q ss_pred CCCCEEEECCCCCchHHHh
Q 017196 68 FERDLCINSPTGSGKTLSY 86 (375)
Q Consensus 68 ~~~~~ii~a~TGsGKTl~~ 86 (375)
....++|.++.|||||..+
T Consensus 4 ~~~~I~l~G~~GsGKsT~~ 22 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQC 22 (222)
T ss_dssp CSCCEEEEESTTSSHHHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 3467999999999999854
No 329
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=65.29 E-value=3.2 Score=34.75 Aligned_cols=18 Identities=22% Similarity=0.457 Sum_probs=15.8
Q ss_pred CCCCEEEECCCCCchHHH
Q 017196 68 FERDLCINSPTGSGKTLS 85 (375)
Q Consensus 68 ~~~~~ii~a~TGsGKTl~ 85 (375)
.|.-+.+.+|+|+|||..
T Consensus 19 ~Gei~~l~GpnGsGKSTL 36 (207)
T 1znw_A 19 VGRVVVLSGPSAVGKSTV 36 (207)
T ss_dssp CCCEEEEECSTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 677789999999999974
No 330
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=65.29 E-value=14 Score=34.90 Aligned_cols=67 Identities=18% Similarity=0.094 Sum_probs=46.2
Q ss_pred ceEEEEcccHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhh-cCCCcEEEeCc
Q 017196 102 LRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQEL-QSAVDILVATP 180 (375)
Q Consensus 102 ~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~IiV~Tp 180 (375)
.++||.+|+++-+++++..++.. ++++..++|.... +..+.. .+..+|+|+|.
T Consensus 178 ~~~lVF~~s~~~a~~l~~~L~~~----~~~v~~lhg~~R~----------------------~~~~~F~~g~~~vLVaT~ 231 (440)
T 1yks_A 178 RPTAWFLPSIRAANVMAASLRKA----GKSVVVLNRKTFE----------------------REYPTIKQKKPDFILATD 231 (440)
T ss_dssp SCEEEECSCHHHHHHHHHHHHHT----TCCEEECCSSSCC------------------------------CCCSEEEESS
T ss_pred CCEEEEeCCHHHHHHHHHHHHHc----CCCEEEecchhHH----------------------HHHhhhcCCCceEEEECC
Confidence 47999999999999999988875 6788999984211 111222 24589999994
Q ss_pred HHHHHHHhhcCCCCCCCccEEE
Q 017196 181 GRLMDHINATRGFTLEHLCYLV 202 (375)
Q Consensus 181 ~~l~~~l~~~~~~~~~~~~~vI 202 (375)
- +. .++++. +++||
T Consensus 232 v-----~e--~GiDip-v~~VI 245 (440)
T 1yks_A 232 I-----AE--MGANLC-VERVL 245 (440)
T ss_dssp S-----TT--CCTTCC-CSEEE
T ss_pred h-----hh--eeeccC-ceEEE
Confidence 2 11 457888 88877
No 331
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=64.72 E-value=3.6 Score=39.18 Aligned_cols=18 Identities=33% Similarity=0.501 Sum_probs=15.6
Q ss_pred CCCEEEECCCCCchHHHh
Q 017196 69 ERDLCINSPTGSGKTLSY 86 (375)
Q Consensus 69 ~~~~ii~a~TGsGKTl~~ 86 (375)
.+++++.+|+|+|||..+
T Consensus 50 ~~~iLl~GppGtGKT~la 67 (444)
T 1g41_A 50 PKNILMIGPTGVGKTEIA 67 (444)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CceEEEEcCCCCCHHHHH
Confidence 468999999999999854
No 332
>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} SCOP: c.37.1.0 PDB: 2xt3_A*
Probab=64.50 E-value=2.5 Score=38.91 Aligned_cols=36 Identities=28% Similarity=0.158 Sum_probs=22.8
Q ss_pred ccHhhHHHHHHh----hCCCCCCCCE--EEECCCCCchHHHh
Q 017196 51 LFPVQVAVWQET----IGPGLFERDL--CINSPTGSGKTLSY 86 (375)
Q Consensus 51 ~~~~Q~~~~~~~----~~~~~~~~~~--ii~a~TGsGKTl~~ 86 (375)
+..-|.+.++.+ +..+..|.|+ +..+.||||||.+.
T Consensus 60 ~~~~Q~~vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTm 101 (344)
T 4a14_A 60 EDAGQEAVYQACVQPLLEAFFEGFNATVFAYGQTGSGKTYTM 101 (344)
T ss_dssp TTCCHHHHHHHHTHHHHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred cCcchhHHHHHHHHHHHHHHHhhcCeeEEEecccCCCceEee
Confidence 344566665553 3334467774 44489999999874
No 333
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=64.35 E-value=4.7 Score=33.80 Aligned_cols=17 Identities=41% Similarity=0.460 Sum_probs=14.1
Q ss_pred CEEEECCCCCchHHHhH
Q 017196 71 DLCINSPTGSGKTLSYA 87 (375)
Q Consensus 71 ~~ii~a~TGsGKTl~~~ 87 (375)
-.++.++.|||||..+.
T Consensus 7 i~l~tG~pGsGKT~~a~ 23 (199)
T 2r2a_A 7 ICLITGTPGSGKTLKMV 23 (199)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred EEEEEeCCCCCHHHHHH
Confidence 46899999999998643
No 334
>1qxn_A SUD, sulfide dehydrogenase; polysulfide-sulfur transferase, homodimer; NMR {Wolinella succinogenes} SCOP: c.46.1.3
Probab=64.32 E-value=5.5 Score=30.95 Aligned_cols=38 Identities=18% Similarity=0.276 Sum_probs=31.6
Q ss_pred CCCeEEEEcCChhhHHHHHHHHHHhcCCcc-eEEeccccccc
Q 017196 331 GEEKCIVFTSSVESTHRLCTLLNHFGELRI-KIKEYSGLQRQ 371 (375)
Q Consensus 331 ~~~k~lIF~~s~~~a~~l~~~L~~~g~~~~-~~~~lh~~~~~ 371 (375)
...+++|||.+-..+...+..|+..| + ++..+.||+..
T Consensus 81 ~~~~ivvyC~~G~rS~~aa~~L~~~G---~~~v~~l~GG~~~ 119 (137)
T 1qxn_A 81 PEKPVVVFCKTAARAALAGKTLREYG---FKTIYNSEGGMDK 119 (137)
T ss_dssp TTSCEEEECCSSSCHHHHHHHHHHHT---CSCEEEESSCHHH
T ss_pred CCCeEEEEcCCCcHHHHHHHHHHHcC---CcceEEEcCcHHH
Confidence 35579999999999999999999766 6 58889998753
No 335
>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A*
Probab=64.29 E-value=2 Score=39.55 Aligned_cols=36 Identities=22% Similarity=0.132 Sum_probs=22.9
Q ss_pred ccHhhHHHHHHh----hCCCCCCCCE--EEECCCCCchHHHh
Q 017196 51 LFPVQVAVWQET----IGPGLFERDL--CINSPTGSGKTLSY 86 (375)
Q Consensus 51 ~~~~Q~~~~~~~----~~~~~~~~~~--ii~a~TGsGKTl~~ 86 (375)
+..-|.+.|+.+ +..+..|.|+ +..+.||||||.+.
T Consensus 71 ~~~sQ~~Vy~~~~~plv~~~l~G~N~tifAYGQTGSGKTyTM 112 (344)
T 3dc4_A 71 ATISQDEMYQALILPLVDKLLEGFQCTALAYGQTGTGKSYSM 112 (344)
T ss_dssp TTCCHHHHHHHHTHHHHHHHHHTCCEEEEEESSTTSSHHHHH
T ss_pred CCCCHHHHHHhhccchhhHhhCCCceEEEEecCCCCCCCeEE
Confidence 445566666553 2333467774 44589999999874
No 336
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=64.29 E-value=3.6 Score=34.08 Aligned_cols=19 Identities=21% Similarity=0.298 Sum_probs=15.5
Q ss_pred CCCCEEEECCCCCchHHHh
Q 017196 68 FERDLCINSPTGSGKTLSY 86 (375)
Q Consensus 68 ~~~~~ii~a~TGsGKTl~~ 86 (375)
.+..+++.++.|||||..+
T Consensus 19 ~~~~I~l~G~~GsGKST~a 37 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQA 37 (201)
T ss_dssp SCCEEEEECCTTSSHHHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 3456899999999999854
No 337
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=64.26 E-value=8.4 Score=32.19 Aligned_cols=34 Identities=18% Similarity=0.118 Sum_probs=26.0
Q ss_pred CCEEEECCCCCchHHHhHHHHHHHhhhcccCCceEEEE
Q 017196 70 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVV 107 (375)
Q Consensus 70 ~~~ii~a~TGsGKTl~~~l~il~~l~~~~~~~~~~lil 107 (375)
..+++..++|.|||.+++-.++..+..+ .+++|+
T Consensus 29 g~i~v~tG~GkGKTTaA~GlalRA~g~G----~rV~~v 62 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAARAVGHG----KNVGVV 62 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHHHHHHTT----CCEEEE
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHCC----CeEEEE
Confidence 4799999999999998766666666443 367777
No 338
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=64.15 E-value=3.3 Score=38.88 Aligned_cols=16 Identities=31% Similarity=0.374 Sum_probs=13.2
Q ss_pred CEEEECCCCCchHHHh
Q 017196 71 DLCINSPTGSGKTLSY 86 (375)
Q Consensus 71 ~~ii~a~TGsGKTl~~ 86 (375)
-++|.+|||+|||..+
T Consensus 4 ~i~i~GptgsGKttla 19 (409)
T 3eph_A 4 VIVIAGTTGVGKSQLS 19 (409)
T ss_dssp EEEEEECSSSSHHHHH
T ss_pred EEEEECcchhhHHHHH
Confidence 3678899999999754
No 339
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=63.98 E-value=3.6 Score=32.90 Aligned_cols=17 Identities=18% Similarity=0.210 Sum_probs=14.4
Q ss_pred CCEEEECCCCCchHHHh
Q 017196 70 RDLCINSPTGSGKTLSY 86 (375)
Q Consensus 70 ~~~ii~a~TGsGKTl~~ 86 (375)
+.+++.++.|||||..+
T Consensus 3 ~~I~l~G~~GsGKsT~a 19 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVG 19 (173)
T ss_dssp CCEEEESCTTSSHHHHH
T ss_pred ceEEEECCCCCCHHHHH
Confidence 35899999999999854
No 340
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=63.60 E-value=3.7 Score=33.12 Aligned_cols=16 Identities=25% Similarity=0.287 Sum_probs=14.0
Q ss_pred CEEEECCCCCchHHHh
Q 017196 71 DLCINSPTGSGKTLSY 86 (375)
Q Consensus 71 ~~ii~a~TGsGKTl~~ 86 (375)
.+++.++.|||||..+
T Consensus 6 ~i~i~G~~GsGKsTla 21 (175)
T 1via_A 6 NIVFIGFMGSGKSTLA 21 (175)
T ss_dssp CEEEECCTTSCHHHHH
T ss_pred EEEEEcCCCCCHHHHH
Confidence 6899999999999854
No 341
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=63.57 E-value=7 Score=36.07 Aligned_cols=19 Identities=32% Similarity=0.277 Sum_probs=15.1
Q ss_pred CCCCEEEECCCCCchHHHh
Q 017196 68 FERDLCINSPTGSGKTLSY 86 (375)
Q Consensus 68 ~~~~~ii~a~TGsGKTl~~ 86 (375)
.|.-+.+.+|+|+|||...
T Consensus 156 ~g~vi~lvG~nGsGKTTll 174 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSL 174 (359)
T ss_dssp SSEEEEEECCTTSCHHHHH
T ss_pred CCeEEEEEcCCCChHHHHH
Confidence 3455889999999999853
No 342
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=63.56 E-value=22 Score=34.02 Aligned_cols=105 Identities=15% Similarity=0.156 Sum_probs=55.4
Q ss_pred CchHHHhHHHHHHHhhhcccCCceEEEEcccHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHHhhcCccccCcc
Q 017196 80 SGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGIC 159 (375)
Q Consensus 80 sGKTl~~~l~il~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (375)
++|... +.-++...... ....++||.+++++-++.+...+.......++++..++|.......... ..
T Consensus 370 ~~k~~~-l~~~l~~~~~~-~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~----------~~ 437 (555)
T 3tbk_A 370 NPKLRD-LYLVLQEEYHL-KPETKTILFVKTRALVDALKKWIEENPALSFLKPGILTGRGRTNRATGM----------TL 437 (555)
T ss_dssp CHHHHH-HHHHHHHHHHH-CTTCCEEEECSSHHHHHHHHHHHHHCGGGTTCCEEECCC----------------------
T ss_pred CHHHHH-HHHHHHHHhcc-CCCceEEEEeCcHHHHHHHHHHHhhCcCcCceeeeEEEecCCccccccc----------CH
Confidence 566543 33344333222 1345799999999999999999987654445667777663221100000 00
Q ss_pred CCchhHHHhhc--CCCcEEEeCcHHHHHHHhhcCCCCCCCccEEEE
Q 017196 160 YDPEDVLQELQ--SAVDILVATPGRLMDHINATRGFTLEHLCYLVV 203 (375)
Q Consensus 160 ~~~~~~~~~~~--~~~~IiV~Tp~~l~~~l~~~~~~~~~~~~~vIi 203 (375)
...++..+... +..+|+|+|.- + ..++++..+++||.
T Consensus 438 ~~R~~~~~~F~~~g~~~vLvaT~~-----~--~~GlDlp~v~~VI~ 476 (555)
T 3tbk_A 438 PAQKCVLEAFRASGDNNILIATSV-----A--DEGIDIAECNLVIL 476 (555)
T ss_dssp --------------CCSEEEECCC-----T--TCCEETTSCSEEEE
T ss_pred HHHHHHHHHHhcCCCeeEEEEcch-----h--hcCCccccCCEEEE
Confidence 00112222333 34799999942 1 14588889998876
No 343
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=63.55 E-value=3.2 Score=34.79 Aligned_cols=16 Identities=19% Similarity=0.353 Sum_probs=13.8
Q ss_pred CEEEECCCCCchHHHh
Q 017196 71 DLCINSPTGSGKTLSY 86 (375)
Q Consensus 71 ~~ii~a~TGsGKTl~~ 86 (375)
.++|.++.|||||..+
T Consensus 2 ~I~l~G~~GsGKsT~a 17 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQA 17 (216)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4789999999999854
No 344
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=63.52 E-value=3.1 Score=34.67 Aligned_cols=19 Identities=16% Similarity=0.114 Sum_probs=16.2
Q ss_pred CCCCEEEECCCCCchHHHh
Q 017196 68 FERDLCINSPTGSGKTLSY 86 (375)
Q Consensus 68 ~~~~~ii~a~TGsGKTl~~ 86 (375)
.+..+++.++.|||||..+
T Consensus 9 ~~~~I~l~G~~GsGKST~~ 27 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQS 27 (212)
T ss_dssp CSCEEEEEESTTSSHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHH
Confidence 5677999999999999854
No 345
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=63.43 E-value=3.4 Score=33.77 Aligned_cols=19 Identities=26% Similarity=0.155 Sum_probs=15.9
Q ss_pred CCCCEEEECCCCCchHHHh
Q 017196 68 FERDLCINSPTGSGKTLSY 86 (375)
Q Consensus 68 ~~~~~ii~a~TGsGKTl~~ 86 (375)
.+..+++.++.|||||..+
T Consensus 12 ~~~~i~l~G~~GsGKsT~~ 30 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIA 30 (186)
T ss_dssp CCEEEEEECCTTSSHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHH
Confidence 4667899999999999854
No 346
>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9
Probab=63.36 E-value=3.3 Score=38.18 Aligned_cols=36 Identities=17% Similarity=0.149 Sum_probs=22.8
Q ss_pred ccHhhHHHHHHh----hCCCCCCCCE--EEECCCCCchHHHh
Q 017196 51 LFPVQVAVWQET----IGPGLFERDL--CINSPTGSGKTLSY 86 (375)
Q Consensus 51 ~~~~Q~~~~~~~----~~~~~~~~~~--ii~a~TGsGKTl~~ 86 (375)
+..-|.+.|+.. +..+..|.|+ +..+.||||||.+.
T Consensus 57 ~~~~Q~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTm 98 (355)
T 1goj_A 57 MSCKQSDIFDFSIKPTVDDILNGYNGTVFAYGQTGAGKSYTM 98 (355)
T ss_dssp TTCCHHHHHHHHTHHHHHHHTTTCCEEEEEECSTTSSHHHHH
T ss_pred CCCccHHHHHHHHHHHHHHHhCCCcceEEEECCCCCCcceEe
Confidence 344566665532 3344578774 44589999999864
No 347
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=63.23 E-value=3.9 Score=33.20 Aligned_cols=17 Identities=24% Similarity=0.202 Sum_probs=14.4
Q ss_pred CCEEEECCCCCchHHHh
Q 017196 70 RDLCINSPTGSGKTLSY 86 (375)
Q Consensus 70 ~~~ii~a~TGsGKTl~~ 86 (375)
..+++.++.|||||..+
T Consensus 3 ~~I~l~G~~GsGKsT~a 19 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIG 19 (184)
T ss_dssp CSEEEECSTTSSHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 35899999999999854
No 348
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=62.94 E-value=3 Score=37.11 Aligned_cols=18 Identities=28% Similarity=0.337 Sum_probs=14.7
Q ss_pred CCCEEEECCCCCchHHHh
Q 017196 69 ERDLCINSPTGSGKTLSY 86 (375)
Q Consensus 69 ~~~~ii~a~TGsGKTl~~ 86 (375)
+.-++++||.|||||..+
T Consensus 33 ~~livl~G~sGsGKSTla 50 (287)
T 1gvn_B 33 PTAFLLGGQPGSGKTSLR 50 (287)
T ss_dssp CEEEEEECCTTSCTHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 455889999999999753
No 349
>1tq1_A AT5G66040, senescence-associated family protein; CESG, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} SCOP: c.46.1.3
Probab=62.65 E-value=5.4 Score=30.58 Aligned_cols=36 Identities=25% Similarity=0.198 Sum_probs=30.5
Q ss_pred CCeEEEEcCChhhHHHHHHHHHHhcCCcce-EEecccccc
Q 017196 332 EEKCIVFTSSVESTHRLCTLLNHFGELRIK-IKEYSGLQR 370 (375)
Q Consensus 332 ~~k~lIF~~s~~~a~~l~~~L~~~g~~~~~-~~~lh~~~~ 370 (375)
..++++||.+-..+...+..|+..| +. +..+.|++.
T Consensus 82 ~~~ivvyC~~G~rs~~aa~~L~~~G---~~~v~~l~GG~~ 118 (129)
T 1tq1_A 82 SDNIIVGCQSGGRSIKATTDLLHAG---FTGVKDIVGGYS 118 (129)
T ss_dssp TSSEEEEESSCSHHHHHHHHHHHHH---CCSEEEEECCHH
T ss_pred CCeEEEECCCCcHHHHHHHHHHHcC---CCCeEEeCCcHH
Confidence 4579999999999999999999766 63 888889875
No 350
>2k0z_A Uncharacterized protein HP1203; A/B domain, structural genomics, unknown function, PSI-2, PR structure initiative; NMR {Helicobacter pylori}
Probab=62.61 E-value=8.3 Score=28.52 Aligned_cols=38 Identities=8% Similarity=0.089 Sum_probs=30.6
Q ss_pred CCCeEEEEcCChhhHHHHHHHHHHhcCCcceEEeccccccc
Q 017196 331 GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQ 371 (375)
Q Consensus 331 ~~~k~lIF~~s~~~a~~l~~~L~~~g~~~~~~~~lh~~~~~ 371 (375)
...++++||.+-..+...+..|+..| +....+.||+..
T Consensus 55 ~~~~ivvyC~~G~rs~~aa~~L~~~G---~~~~~l~GG~~~ 92 (110)
T 2k0z_A 55 KDKKVLLHCRAGRRALDAAKSMHELG---YTPYYLEGNVYD 92 (110)
T ss_dssp SSSCEEEECSSSHHHHHHHHHHHHTT---CCCEEEESCGGG
T ss_pred CCCEEEEEeCCCchHHHHHHHHHHCC---CCEEEecCCHHH
Confidence 45679999999999999999999766 544778888764
No 351
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=62.61 E-value=3.5 Score=33.71 Aligned_cols=17 Identities=29% Similarity=0.536 Sum_probs=13.7
Q ss_pred CCEEEECCCCCchHHHh
Q 017196 70 RDLCINSPTGSGKTLSY 86 (375)
Q Consensus 70 ~~~ii~a~TGsGKTl~~ 86 (375)
.-+++.+|+|+|||..+
T Consensus 3 ~ii~l~G~~GaGKSTl~ 19 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTC 19 (189)
T ss_dssp EEEEEECSTTSSHHHHH
T ss_pred eEEEEECCCCCcHHHHH
Confidence 34688999999999843
No 352
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=62.53 E-value=4.2 Score=39.17 Aligned_cols=18 Identities=33% Similarity=0.600 Sum_probs=15.3
Q ss_pred CCCEEEECCCCCchHHHh
Q 017196 69 ERDLCINSPTGSGKTLSY 86 (375)
Q Consensus 69 ~~~~ii~a~TGsGKTl~~ 86 (375)
.+.+++.+|+|+|||+.+
T Consensus 49 p~gvLL~GppGtGKT~La 66 (476)
T 2ce7_A 49 PKGILLVGPPGTGKTLLA 66 (476)
T ss_dssp CSEEEEECCTTSSHHHHH
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 456999999999999854
No 353
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=62.51 E-value=3.4 Score=34.63 Aligned_cols=16 Identities=25% Similarity=0.341 Sum_probs=13.8
Q ss_pred CEEEECCCCCchHHHh
Q 017196 71 DLCINSPTGSGKTLSY 86 (375)
Q Consensus 71 ~~ii~a~TGsGKTl~~ 86 (375)
.++|.++.|||||..+
T Consensus 2 ~I~l~G~~GsGKsT~a 17 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQG 17 (216)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4789999999999854
No 354
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=62.30 E-value=2.6 Score=35.91 Aligned_cols=18 Identities=39% Similarity=0.541 Sum_probs=11.4
Q ss_pred CCCCEEEECCCCCchHHH
Q 017196 68 FERDLCINSPTGSGKTLS 85 (375)
Q Consensus 68 ~~~~~ii~a~TGsGKTl~ 85 (375)
.|.-+.+.+|+|+|||..
T Consensus 26 ~G~ii~l~Gp~GsGKSTl 43 (231)
T 3lnc_A 26 VGVILVLSSPSGCGKTTV 43 (231)
T ss_dssp CCCEEEEECSCC----CH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 566788999999999974
No 355
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=62.17 E-value=3.6 Score=34.26 Aligned_cols=19 Identities=11% Similarity=0.088 Sum_probs=16.2
Q ss_pred CCCCEEEECCCCCchHHHh
Q 017196 68 FERDLCINSPTGSGKTLSY 86 (375)
Q Consensus 68 ~~~~~ii~a~TGsGKTl~~ 86 (375)
.+..+++.++.|||||..+
T Consensus 8 ~~~~I~l~G~~GsGKsT~~ 26 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQS 26 (215)
T ss_dssp CCCEEEEEESTTSSHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 5677999999999999854
No 356
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=62.06 E-value=3.5 Score=34.19 Aligned_cols=19 Identities=21% Similarity=0.158 Sum_probs=15.8
Q ss_pred CCCCEEEECCCCCchHHHh
Q 017196 68 FERDLCINSPTGSGKTLSY 86 (375)
Q Consensus 68 ~~~~~ii~a~TGsGKTl~~ 86 (375)
.+..+++.++.|||||..+
T Consensus 3 ~~~~I~i~G~~GsGKsT~~ 21 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQA 21 (213)
T ss_dssp CCEEEEEECCTTSSHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHH
Confidence 4567899999999999854
No 357
>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A*
Probab=62.04 E-value=2.9 Score=38.10 Aligned_cols=36 Identities=22% Similarity=0.118 Sum_probs=22.6
Q ss_pred ccHhhHHHHHHh----hCCCCCCCCE--EEECCCCCchHHHh
Q 017196 51 LFPVQVAVWQET----IGPGLFERDL--CINSPTGSGKTLSY 86 (375)
Q Consensus 51 ~~~~Q~~~~~~~----~~~~~~~~~~--ii~a~TGsGKTl~~ 86 (375)
+..-|.+.++.+ +..+..|.|+ +..+.||||||.+.
T Consensus 54 ~~~sQ~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTm 95 (325)
T 1bg2_A 54 SSTSQEQVYNDCAKKIVKDVLEGYNGTIFAYGQTSSGKTHTM 95 (325)
T ss_dssp TTCCHHHHHHHHTHHHHHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred CCCCHHHHHHHHhhhhHHHHhCCCeEEEEEECCCCCCCceEe
Confidence 344566655543 2334467774 44589999999874
No 358
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=61.97 E-value=1.5 Score=44.94 Aligned_cols=16 Identities=38% Similarity=0.432 Sum_probs=14.3
Q ss_pred CEEEECCCCCchHHHh
Q 017196 71 DLCINSPTGSGKTLSY 86 (375)
Q Consensus 71 ~~ii~a~TGsGKTl~~ 86 (375)
.+++.+|+|+|||..+
T Consensus 523 ~~Ll~Gp~GtGKT~lA 538 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELA 538 (758)
T ss_dssp EEEEESCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5999999999999864
No 359
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=61.96 E-value=3.8 Score=32.66 Aligned_cols=16 Identities=19% Similarity=0.069 Sum_probs=13.7
Q ss_pred CEEEECCCCCchHHHh
Q 017196 71 DLCINSPTGSGKTLSY 86 (375)
Q Consensus 71 ~~ii~a~TGsGKTl~~ 86 (375)
.+++.++.|||||..+
T Consensus 2 ~I~l~G~~GsGKsT~a 17 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVG 17 (168)
T ss_dssp EEEEESCTTSCHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 4789999999999854
No 360
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=61.92 E-value=4.8 Score=36.59 Aligned_cols=17 Identities=29% Similarity=0.436 Sum_probs=14.8
Q ss_pred CCEEEECCCCCchHHHh
Q 017196 70 RDLCINSPTGSGKTLSY 86 (375)
Q Consensus 70 ~~~ii~a~TGsGKTl~~ 86 (375)
..+++.+|+|+|||..+
T Consensus 52 ~~~ll~Gp~G~GKTTLa 68 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLA 68 (334)
T ss_dssp CCEEEESSTTSSHHHHH
T ss_pred CeEEEECCCCCcHHHHH
Confidence 56999999999999853
No 361
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=61.84 E-value=7 Score=35.54 Aligned_cols=18 Identities=28% Similarity=0.198 Sum_probs=15.1
Q ss_pred CCCCEEEECCCCCchHHH
Q 017196 68 FERDLCINSPTGSGKTLS 85 (375)
Q Consensus 68 ~~~~~ii~a~TGsGKTl~ 85 (375)
.|.-+.+.+|+|+|||..
T Consensus 128 ~g~vi~lvG~nGaGKTTl 145 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTT 145 (328)
T ss_dssp SSEEEEEECCTTSSHHHH
T ss_pred CCeEEEEECCCCCCHHHH
Confidence 455688999999999985
No 362
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=61.72 E-value=7.5 Score=37.55 Aligned_cols=36 Identities=11% Similarity=0.066 Sum_probs=21.8
Q ss_pred CCCCEEEECCCCCchHHHhHHHHHHHhhhcccCCceEEEE
Q 017196 68 FERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVV 107 (375)
Q Consensus 68 ~~~~~ii~a~TGsGKTl~~~l~il~~l~~~~~~~~~~lil 107 (375)
.|.-+.|.+++|+|||... ..+..+... .+.++++.
T Consensus 292 ~GeVI~LVGpNGSGKTTLl--~~LAgll~~--~~G~V~l~ 327 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTI--GKLARQFEQ--QGKSVMLA 327 (503)
T ss_dssp TTEEEEEECCTTSSHHHHH--HHHHHHHHH--TTCCEEEE
T ss_pred CCeEEEEECCCcccHHHHH--HHHHHHhhh--cCCeEEEe
Confidence 3455889999999999853 333333332 22346665
No 363
>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} SCOP: c.37.1.0
Probab=61.62 E-value=3.4 Score=38.11 Aligned_cols=36 Identities=25% Similarity=0.220 Sum_probs=23.7
Q ss_pred ccHhhHHHHHHh----hCCCCCCCCE--EEECCCCCchHHHh
Q 017196 51 LFPVQVAVWQET----IGPGLFERDL--CINSPTGSGKTLSY 86 (375)
Q Consensus 51 ~~~~Q~~~~~~~----~~~~~~~~~~--ii~a~TGsGKTl~~ 86 (375)
+..-|.+.++.+ +..+..|.|+ +..+.||||||.+.
T Consensus 82 ~~~~Q~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTm 123 (355)
T 3lre_A 82 ETSTQSEVFEHTTKPILRSFLNGYNCTVLAYGATGAGKTHTM 123 (355)
T ss_dssp TTCCHHHHHHTTHHHHHHHHTTTCCEEEEEECCTTSSHHHHH
T ss_pred CCCChHHHHHHHHHHHHHHHhCCCceEEEEeCCCCCCceeee
Confidence 344577766543 3445578774 44489999999874
No 364
>3nwn_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens}
Probab=61.43 E-value=2.6 Score=38.93 Aligned_cols=33 Identities=24% Similarity=0.262 Sum_probs=21.9
Q ss_pred hhHHHHHHh----hCCCCCCCCE--EEECCCCCchHHHh
Q 017196 54 VQVAVWQET----IGPGLFERDL--CINSPTGSGKTLSY 86 (375)
Q Consensus 54 ~Q~~~~~~~----~~~~~~~~~~--ii~a~TGsGKTl~~ 86 (375)
-|.+.|+.+ +..+..|.|+ +..+.||||||.+.
T Consensus 84 sQ~~Vy~~~~~plv~~~l~G~N~tifAYGQTGSGKTyTM 122 (359)
T 3nwn_A 84 SQDLVYETVAKDVVSQALDGYNGTIMCYGQTGAGKTYTM 122 (359)
T ss_dssp CHHHHHHHHTHHHHHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhCCCCEEEEEeCCCCCCccEEe
Confidence 477666554 2344577774 34479999999874
No 365
>3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii}
Probab=61.43 E-value=4.3 Score=37.35 Aligned_cols=35 Identities=23% Similarity=0.303 Sum_probs=21.9
Q ss_pred cHhhHHHHHH---hhCCCCCCCCE--EEECCCCCchHHHh
Q 017196 52 FPVQVAVWQE---TIGPGLFERDL--CINSPTGSGKTLSY 86 (375)
Q Consensus 52 ~~~Q~~~~~~---~~~~~~~~~~~--ii~a~TGsGKTl~~ 86 (375)
..-|.+.++. ++..+..|.|+ +..+.||||||.+.
T Consensus 64 ~~~Q~~vf~~v~~lv~~~l~G~n~tifAYGqTGSGKTyTm 103 (349)
T 3t0q_A 64 SHTNKEIFEEIRQLVQSSLDGYNVCIFAYGQTGSGKTYTM 103 (349)
T ss_dssp TCCHHHHHHHHHHHHHGGGTTCEEEEEEECSTTSSHHHHH
T ss_pred CccHHHHHHHHHHHHHHHHCCcceeEEEeCCCCCCCceEe
Confidence 3345444433 34445578775 34489999999875
No 366
>3ilm_A ALR3790 protein; rhodanese-like, NSR437H, NESG, structural genomics, protein structure initiative, northeast structural genomics consortium; 2.26A {Nostoc SP} PDB: 2kl3_A
Probab=61.39 E-value=8.8 Score=29.97 Aligned_cols=37 Identities=22% Similarity=0.298 Sum_probs=30.5
Q ss_pred CCeEEEEcCChhhHHHHHHHHHHhcCCcc-eEEeccccccc
Q 017196 332 EEKCIVFTSSVESTHRLCTLLNHFGELRI-KIKEYSGLQRQ 371 (375)
Q Consensus 332 ~~k~lIF~~s~~~a~~l~~~L~~~g~~~~-~~~~lh~~~~~ 371 (375)
..++++||.+-..+...+..|+..| + ++..+.||+..
T Consensus 56 ~~~ivvyC~~g~rs~~aa~~L~~~G---~~~v~~l~GG~~~ 93 (141)
T 3ilm_A 56 SRDIYVYGAGDEQTSQAVNLLRSAG---FEHVSELKGGLAA 93 (141)
T ss_dssp TSEEEEECSSHHHHHHHHHHHHHTT---CCSEEECTTHHHH
T ss_pred CCeEEEEECCChHHHHHHHHHHHcC---CCCEEEecCHHHH
Confidence 4579999999999999999999766 6 47888888753
No 367
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=61.34 E-value=2.9 Score=42.84 Aligned_cols=26 Identities=19% Similarity=0.206 Sum_probs=18.8
Q ss_pred CCCCEEEECCCCCchHHHhHHHHHHHh
Q 017196 68 FERDLCINSPTGSGKTLSYALPIVQTL 94 (375)
Q Consensus 68 ~~~~~ii~a~TGsGKTl~~~l~il~~l 94 (375)
...++++.+|+|+|||..+ -.+...+
T Consensus 200 ~~~~vLL~G~pGtGKT~la-~~la~~l 225 (758)
T 3pxi_A 200 TKNNPVLIGEPGVGKTAIA-EGLAQQI 225 (758)
T ss_dssp SSCEEEEESCTTTTTHHHH-HHHHHHH
T ss_pred CCCCeEEECCCCCCHHHHH-HHHHHHH
Confidence 4468999999999999864 3333443
No 368
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=61.31 E-value=3.8 Score=34.30 Aligned_cols=19 Identities=16% Similarity=0.123 Sum_probs=16.3
Q ss_pred CCCCEEEECCCCCchHHHh
Q 017196 68 FERDLCINSPTGSGKTLSY 86 (375)
Q Consensus 68 ~~~~~ii~a~TGsGKTl~~ 86 (375)
.|..+++.++.|+|||..+
T Consensus 24 ~~~~i~~~G~~GsGKsT~~ 42 (211)
T 1m7g_A 24 RGLTIWLTGLSASGKSTLA 42 (211)
T ss_dssp SCEEEEEECSTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 5778899999999999753
No 369
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=60.99 E-value=6.2 Score=38.62 Aligned_cols=19 Identities=37% Similarity=0.506 Sum_probs=16.5
Q ss_pred CCCCEEEECCCCCchHHHh
Q 017196 68 FERDLCINSPTGSGKTLSY 86 (375)
Q Consensus 68 ~~~~~ii~a~TGsGKTl~~ 86 (375)
.+..+++.+|+|+|||..+
T Consensus 107 ~g~~vll~Gp~GtGKTtla 125 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLA 125 (543)
T ss_dssp CSCEEEEESSSSSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 5778999999999999853
No 370
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=60.97 E-value=5.7 Score=33.82 Aligned_cols=19 Identities=21% Similarity=0.237 Sum_probs=15.8
Q ss_pred CCCCEEEECCCCCchHHHh
Q 017196 68 FERDLCINSPTGSGKTLSY 86 (375)
Q Consensus 68 ~~~~~ii~a~TGsGKTl~~ 86 (375)
.+..+++.++.|||||..+
T Consensus 15 ~~~~I~l~G~~GsGKsT~a 33 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQA 33 (233)
T ss_dssp CCCEEEEECCTTSSHHHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 3467999999999999854
No 371
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=60.84 E-value=3.5 Score=33.54 Aligned_cols=16 Identities=19% Similarity=0.144 Sum_probs=13.6
Q ss_pred CEEEECCCCCchHHHh
Q 017196 71 DLCINSPTGSGKTLSY 86 (375)
Q Consensus 71 ~~ii~a~TGsGKTl~~ 86 (375)
.++|.++.|||||..+
T Consensus 3 ~I~i~G~~GsGKsT~~ 18 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVL 18 (194)
T ss_dssp EEEEEECTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4789999999999753
No 372
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=60.78 E-value=5.7 Score=33.39 Aligned_cols=18 Identities=28% Similarity=0.495 Sum_probs=14.8
Q ss_pred CCCEEEECCCCCchHHHh
Q 017196 69 ERDLCINSPTGSGKTLSY 86 (375)
Q Consensus 69 ~~~~ii~a~TGsGKTl~~ 86 (375)
+..+.+.+++|||||..+
T Consensus 5 ~~~i~i~G~~GsGKSTl~ 22 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLC 22 (227)
T ss_dssp SCEEEEECCTTSSHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 346889999999999854
No 373
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=60.77 E-value=3.2 Score=33.57 Aligned_cols=18 Identities=39% Similarity=0.486 Sum_probs=11.2
Q ss_pred CCCEEEECCCCCchHHHh
Q 017196 69 ERDLCINSPTGSGKTLSY 86 (375)
Q Consensus 69 ~~~~ii~a~TGsGKTl~~ 86 (375)
+..+++.++.|||||..+
T Consensus 5 ~~~I~l~G~~GsGKST~a 22 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTA 22 (183)
T ss_dssp CCEEEEECCC----CHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 456899999999999854
No 374
>2jtq_A Phage shock protein E; solution structure rhodanese, stress response, transferase; NMR {Escherichia coli} PDB: 2jtr_A 2jts_A
Probab=60.76 E-value=10 Score=26.40 Aligned_cols=37 Identities=11% Similarity=0.260 Sum_probs=29.1
Q ss_pred CCCeEEEEcCChhhHHHHHHHHHHhcCCcc-eEEeccccccc
Q 017196 331 GEEKCIVFTSSVESTHRLCTLLNHFGELRI-KIKEYSGLQRQ 371 (375)
Q Consensus 331 ~~~k~lIF~~s~~~a~~l~~~L~~~g~~~~-~~~~lh~~~~~ 371 (375)
+..++++||.+-..+...+..|+..| + ++..+ |++..
T Consensus 40 ~~~~ivv~C~~g~rs~~aa~~L~~~G---~~~v~~l-GG~~~ 77 (85)
T 2jtq_A 40 KNDTVKVYCNAGRQSGQAKEILSEMG---YTHVENA-GGLKD 77 (85)
T ss_dssp TTSEEEEEESSSHHHHHHHHHHHHTT---CSSEEEE-EETTT
T ss_pred CCCcEEEEcCCCchHHHHHHHHHHcC---CCCEEec-cCHHH
Confidence 35689999999999999999999766 5 35556 77754
No 375
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=60.75 E-value=3.5 Score=35.53 Aligned_cols=32 Identities=9% Similarity=0.053 Sum_probs=22.6
Q ss_pred CCCccEEEEecchhhhhHhHHhHHHHHHHhhh
Q 017196 195 LEHLCYLVVDETDRLLREAYQAWLPTVLQLTR 226 (375)
Q Consensus 195 ~~~~~~vIiDE~h~l~~~~~~~~l~~i~~~l~ 226 (375)
..+.+++++||-=.-++......+..++..+.
T Consensus 161 ~~~p~llllDEPts~LD~~~~~~i~~~l~~l~ 192 (235)
T 3tif_A 161 ANNPPIILADQPTWALDSKTGEKIMQLLKKLN 192 (235)
T ss_dssp TTCCSEEEEESTTTTSCHHHHHHHHHHHHHHH
T ss_pred HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHH
Confidence 45678999999988887766555555555543
No 376
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=60.75 E-value=3.6 Score=33.79 Aligned_cols=18 Identities=28% Similarity=0.259 Sum_probs=15.1
Q ss_pred CCCEEEECCCCCchHHHh
Q 017196 69 ERDLCINSPTGSGKTLSY 86 (375)
Q Consensus 69 ~~~~ii~a~TGsGKTl~~ 86 (375)
+..+++.++.|||||..+
T Consensus 12 ~~~I~l~G~~GsGKsT~a 29 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQC 29 (199)
T ss_dssp SCEEEEEECTTSSHHHHH
T ss_pred CCEEEEECCCCCCHHHHH
Confidence 456899999999999854
No 377
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=60.73 E-value=5.8 Score=31.36 Aligned_cols=15 Identities=33% Similarity=0.213 Sum_probs=12.8
Q ss_pred CEEEECCCCCchHHH
Q 017196 71 DLCINSPTGSGKTLS 85 (375)
Q Consensus 71 ~~ii~a~TGsGKTl~ 85 (375)
-.+|.+|+|+|||..
T Consensus 25 ~~~I~G~NGsGKSti 39 (149)
T 1f2t_A 25 INLIIGQNGSGKSSL 39 (149)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred eEEEECCCCCCHHHH
Confidence 368889999999974
No 378
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=60.70 E-value=6.6 Score=33.97 Aligned_cols=19 Identities=21% Similarity=0.267 Sum_probs=15.3
Q ss_pred CCCCEEEECCCCCchHHHh
Q 017196 68 FERDLCINSPTGSGKTLSY 86 (375)
Q Consensus 68 ~~~~~ii~a~TGsGKTl~~ 86 (375)
.+..+++.++.|||||..+
T Consensus 31 ~~~~i~l~G~~GsGKSTla 49 (253)
T 2p5t_B 31 QPIAILLGGQSGAGKTTIH 49 (253)
T ss_dssp SCEEEEEESCGGGTTHHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 3456899999999999753
No 379
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=60.37 E-value=9.5 Score=34.56 Aligned_cols=15 Identities=20% Similarity=0.280 Sum_probs=12.6
Q ss_pred CEEEECCCCCchHHH
Q 017196 71 DLCINSPTGSGKTLS 85 (375)
Q Consensus 71 ~~ii~a~TGsGKTl~ 85 (375)
-+.|.+|+|||||..
T Consensus 94 iigI~GpsGSGKSTl 108 (321)
T 3tqc_A 94 IIGIAGSVAVGKSTT 108 (321)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 367889999999975
No 380
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=60.37 E-value=4.1 Score=33.55 Aligned_cols=16 Identities=25% Similarity=0.401 Sum_probs=13.5
Q ss_pred CEEEECCCCCchHHHh
Q 017196 71 DLCINSPTGSGKTLSY 86 (375)
Q Consensus 71 ~~ii~a~TGsGKTl~~ 86 (375)
.+++.++.|||||..+
T Consensus 2 ~I~i~G~~GsGKsT~~ 17 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTIS 17 (205)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCccCHHHHH
Confidence 4789999999999853
No 381
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=60.29 E-value=9 Score=32.84 Aligned_cols=22 Identities=18% Similarity=0.297 Sum_probs=16.6
Q ss_pred CEEEECCCCCchHHHhHHHHHH
Q 017196 71 DLCINSPTGSGKTLSYALPIVQ 92 (375)
Q Consensus 71 ~~ii~a~TGsGKTl~~~l~il~ 92 (375)
++++.++.|+|||..++--+..
T Consensus 8 ~I~~~~kgGvGKTt~a~~la~~ 29 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAMLQAAHA 29 (228)
T ss_dssp EEEEESSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHH
Confidence 6889999999999875443333
No 382
>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C*
Probab=60.22 E-value=3.1 Score=38.62 Aligned_cols=34 Identities=18% Similarity=0.314 Sum_probs=21.4
Q ss_pred HhhHHHHHHh----hCCCCCCCCE--EEECCCCCchHHHh
Q 017196 53 PVQVAVWQET----IGPGLFERDL--CINSPTGSGKTLSY 86 (375)
Q Consensus 53 ~~Q~~~~~~~----~~~~~~~~~~--ii~a~TGsGKTl~~ 86 (375)
.-|.+.|+.+ +..+..|.|+ +..+.||||||.+.
T Consensus 68 asQ~~Vy~~~~~plv~~~l~G~N~tifAYGqTGSGKTyTm 107 (366)
T 2zfi_A 68 ASQKQVYRDIGEEMLQHAFEGYNVCIFAYGQTGAGKSYTM 107 (366)
T ss_dssp CCHHHHHHHTHHHHHHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHhcCCeeEEEEeCCCCCCCceEe
Confidence 3466665543 2333467774 44489999999864
No 383
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=59.75 E-value=5.5 Score=32.23 Aligned_cols=15 Identities=33% Similarity=0.290 Sum_probs=12.9
Q ss_pred CEEEECCCCCchHHH
Q 017196 71 DLCINSPTGSGKTLS 85 (375)
Q Consensus 71 ~~ii~a~TGsGKTl~ 85 (375)
-.+|.+++|+|||..
T Consensus 28 ~~~i~G~NGsGKStl 42 (182)
T 3kta_A 28 FTAIVGANGSGKSNI 42 (182)
T ss_dssp EEEEEECTTSSHHHH
T ss_pred cEEEECCCCCCHHHH
Confidence 468889999999974
No 384
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=59.75 E-value=3.5 Score=34.39 Aligned_cols=18 Identities=33% Similarity=0.141 Sum_probs=14.8
Q ss_pred CCCCEEEECCCCCchHHH
Q 017196 68 FERDLCINSPTGSGKTLS 85 (375)
Q Consensus 68 ~~~~~ii~a~TGsGKTl~ 85 (375)
.+.-+.|.+|+|||||..
T Consensus 5 ~~~~i~i~G~~GsGKSTl 22 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTL 22 (211)
T ss_dssp CCEEEEEEESTTSSHHHH
T ss_pred CcEEEEEECCCCCCHHHH
Confidence 455678999999999974
No 385
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=59.57 E-value=8.9 Score=38.49 Aligned_cols=38 Identities=18% Similarity=0.268 Sum_probs=27.9
Q ss_pred CceEEEEcccHHHHHHHHHHHHHh--ccccCceEEEeecC
Q 017196 101 CLRALVVLPTRDLALQVKDVFAAI--APAVGLSVGLAVGQ 138 (375)
Q Consensus 101 ~~~~lil~Pt~~L~~Q~~~~~~~~--~~~~~~~v~~~~~~ 138 (375)
+.++||.++++..++.+.+.++.. ....|+++..++|+
T Consensus 400 ~~~~IVF~~s~~~~~~l~~~L~~~~~l~~~g~~~~~lhg~ 439 (699)
T 4gl2_A 400 SARGIIFTKTRQSAYALSQWITENEKFAEVGVKAHHLIGA 439 (699)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHSSCSCC-----CEECCCS
T ss_pred CCcEEEEECcHHHHHHHHHHHHhCccccccCcceEEEECC
Confidence 458999999999999999998864 23336888899998
No 386
>3d1p_A Putative thiosulfate sulfurtransferase YOR285W; atomic structure, atomic resolution structure, PSI, MCSG; HET: MSE; 0.98A {Saccharomyces cerevisiae}
Probab=59.54 E-value=9.5 Score=29.46 Aligned_cols=37 Identities=14% Similarity=0.205 Sum_probs=30.8
Q ss_pred CCeEEEEcCChhhHHHHHHHHHHhcCCcc-eEEeccccccc
Q 017196 332 EEKCIVFTSSVESTHRLCTLLNHFGELRI-KIKEYSGLQRQ 371 (375)
Q Consensus 332 ~~k~lIF~~s~~~a~~l~~~L~~~g~~~~-~~~~lh~~~~~ 371 (375)
..++++||.+-..+...+..|...| + ++..+.||+..
T Consensus 91 ~~~ivvyC~~G~rs~~aa~~L~~~G---~~~v~~l~GG~~~ 128 (139)
T 3d1p_A 91 AKELIFYCASGKRGGEAQKVASSHG---YSNTSLYPGSMND 128 (139)
T ss_dssp TSEEEEECSSSHHHHHHHHHHHTTT---CCSEEECTTHHHH
T ss_pred CCeEEEECCCCchHHHHHHHHHHcC---CCCeEEeCCcHHH
Confidence 4589999999999999999999555 7 48899998753
No 387
>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis}
Probab=59.51 E-value=3.4 Score=38.05 Aligned_cols=36 Identities=22% Similarity=0.235 Sum_probs=22.9
Q ss_pred ccHhhHHHHHHh----hCCCCCCCCE--EEECCCCCchHHHh
Q 017196 51 LFPVQVAVWQET----IGPGLFERDL--CINSPTGSGKTLSY 86 (375)
Q Consensus 51 ~~~~Q~~~~~~~----~~~~~~~~~~--ii~a~TGsGKTl~~ 86 (375)
+..-|.+.|+.. +..+..|.|+ +..+.||||||.+.
T Consensus 66 ~~~~Q~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTm 107 (350)
T 2vvg_A 66 QTSCNYGIFQASFKPLIDAVLEGFNSTIFAYGQTGAGKTWTM 107 (350)
T ss_dssp TTCCHHHHHHHTTHHHHHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred CCcchhHHHHHHHHHHHHHHhCCCceeEEeecCCCCCCCEEe
Confidence 445566666543 2333467774 44489999999874
No 388
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=59.42 E-value=5.1 Score=38.92 Aligned_cols=17 Identities=35% Similarity=0.520 Sum_probs=15.0
Q ss_pred CCEEEECCCCCchHHHh
Q 017196 70 RDLCINSPTGSGKTLSY 86 (375)
Q Consensus 70 ~~~ii~a~TGsGKTl~~ 86 (375)
+.+++.+|+|+|||..+
T Consensus 78 ~~lLL~GppGtGKTtla 94 (516)
T 1sxj_A 78 RAAMLYGPPGIGKTTAA 94 (516)
T ss_dssp SEEEEECSTTSSHHHHH
T ss_pred cEEEEECCCCCCHHHHH
Confidence 57999999999999864
No 389
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=59.32 E-value=3.8 Score=33.33 Aligned_cols=17 Identities=24% Similarity=0.262 Sum_probs=14.3
Q ss_pred CCEEEECCCCCchHHHh
Q 017196 70 RDLCINSPTGSGKTLSY 86 (375)
Q Consensus 70 ~~~ii~a~TGsGKTl~~ 86 (375)
..+++.++.|||||..+
T Consensus 7 ~~I~l~G~~GsGKsT~~ 23 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQC 23 (194)
T ss_dssp EEEEEEESTTSSHHHHH
T ss_pred cEEEEECCCCCCHHHHH
Confidence 45889999999999854
No 390
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=59.24 E-value=6.5 Score=34.22 Aligned_cols=18 Identities=33% Similarity=0.362 Sum_probs=16.3
Q ss_pred CCCEEEECCCCCchHHHh
Q 017196 69 ERDLCINSPTGSGKTLSY 86 (375)
Q Consensus 69 ~~~~ii~a~TGsGKTl~~ 86 (375)
|..+.+.+++|+|||...
T Consensus 48 g~~i~l~G~~GsGKSTl~ 65 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVG 65 (250)
T ss_dssp TCCEEEECSTTSCHHHHH
T ss_pred CCEEEEECCCCCCHHHHH
Confidence 889999999999999853
No 391
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=59.15 E-value=3.1 Score=34.90 Aligned_cols=14 Identities=21% Similarity=0.311 Sum_probs=11.5
Q ss_pred ccEEEEecchhhhh
Q 017196 198 LCYLVVDETDRLLR 211 (375)
Q Consensus 198 ~~~vIiDE~h~l~~ 211 (375)
-.+|||||||.++.
T Consensus 88 ~~vliIDEAq~l~~ 101 (199)
T 2r2a_A 88 GSIVIVDEAQDVWP 101 (199)
T ss_dssp TCEEEETTGGGTSB
T ss_pred ceEEEEEChhhhcc
Confidence 45999999999853
No 392
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=58.98 E-value=4.4 Score=33.50 Aligned_cols=17 Identities=18% Similarity=0.251 Sum_probs=14.2
Q ss_pred CCEEEECCCCCchHHHh
Q 017196 70 RDLCINSPTGSGKTLSY 86 (375)
Q Consensus 70 ~~~ii~a~TGsGKTl~~ 86 (375)
..+++.++.|||||..+
T Consensus 16 ~~I~l~G~~GsGKsT~~ 32 (203)
T 1ukz_A 16 SVIFVLGGPGAGKGTQC 32 (203)
T ss_dssp EEEEEECSTTSSHHHHH
T ss_pred cEEEEECCCCCCHHHHH
Confidence 45889999999999853
No 393
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=58.95 E-value=4.2 Score=35.47 Aligned_cols=18 Identities=17% Similarity=0.108 Sum_probs=15.0
Q ss_pred CCCEEEECCCCCchHHHh
Q 017196 69 ERDLCINSPTGSGKTLSY 86 (375)
Q Consensus 69 ~~~~ii~a~TGsGKTl~~ 86 (375)
+..++++|+.|||||..+
T Consensus 4 ~~lIvl~G~pGSGKSTla 21 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFS 21 (260)
T ss_dssp CEEEEEECCTTSSHHHHH
T ss_pred CEEEEEEcCCCCCHHHHH
Confidence 456899999999999854
No 394
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=58.55 E-value=7 Score=32.33 Aligned_cols=17 Identities=35% Similarity=0.628 Sum_probs=14.2
Q ss_pred CCCEEEECCCCCchHHH
Q 017196 69 ERDLCINSPTGSGKTLS 85 (375)
Q Consensus 69 ~~~~ii~a~TGsGKTl~ 85 (375)
|..+.+.+|+|+|||..
T Consensus 1 G~~i~i~G~nG~GKTTl 17 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTL 17 (189)
T ss_dssp CCCEEEESCCSSCHHHH
T ss_pred CCEEEEECCCCChHHHH
Confidence 34578999999999985
No 395
>2fsx_A RV0390, COG0607: rhodanese-related sulfurtransferase; RV0390 BR SAD DATA with FBAR, structural genomics, PSI; 1.80A {Mycobacterium tuberculosis}
Probab=58.51 E-value=8.9 Score=30.08 Aligned_cols=36 Identities=14% Similarity=0.034 Sum_probs=30.1
Q ss_pred CCeEEEEcCChhhHHHHHHHHHHhcCCcc-eEEecccccc
Q 017196 332 EEKCIVFTSSVESTHRLCTLLNHFGELRI-KIKEYSGLQR 370 (375)
Q Consensus 332 ~~k~lIF~~s~~~a~~l~~~L~~~g~~~~-~~~~lh~~~~ 370 (375)
..++++||.+-..+...+..|...| + ++..+.|++.
T Consensus 80 ~~~ivvyC~~G~rS~~aa~~L~~~G---~~~v~~l~GG~~ 116 (148)
T 2fsx_A 80 ERPVIFLCRSGNRSIGAAEVATEAG---ITPAYNVLDGFE 116 (148)
T ss_dssp -CCEEEECSSSSTHHHHHHHHHHTT---CCSEEEETTTTT
T ss_pred CCEEEEEcCCChhHHHHHHHHHHcC---CcceEEEcCChh
Confidence 4579999999888999999999665 6 5889999984
No 396
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=58.49 E-value=6 Score=32.35 Aligned_cols=15 Identities=33% Similarity=0.472 Sum_probs=13.0
Q ss_pred CEEEECCCCCchHHH
Q 017196 71 DLCINSPTGSGKTLS 85 (375)
Q Consensus 71 ~~ii~a~TGsGKTl~ 85 (375)
.+.+.+|.|+|||..
T Consensus 2 ~i~l~G~nGsGKTTL 16 (178)
T 1ye8_A 2 KIIITGEPGVGKTTL 16 (178)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 478899999999974
No 397
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=57.89 E-value=4.8 Score=32.32 Aligned_cols=18 Identities=28% Similarity=0.252 Sum_probs=15.5
Q ss_pred CCCCCEEEECCCCCchHH
Q 017196 67 LFERDLCINSPTGSGKTL 84 (375)
Q Consensus 67 ~~~~~~ii~a~TGsGKTl 84 (375)
..|.-+.+.+|.|+|||.
T Consensus 31 ~~Ge~v~L~G~nGaGKTT 48 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTT 48 (158)
T ss_dssp SSCEEEEEECSTTSSHHH
T ss_pred CCCCEEEEECCCCCCHHH
Confidence 467778899999999997
No 398
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=57.64 E-value=4.9 Score=33.72 Aligned_cols=18 Identities=22% Similarity=0.265 Sum_probs=14.7
Q ss_pred CCCEEEECCCCCchHHHh
Q 017196 69 ERDLCINSPTGSGKTLSY 86 (375)
Q Consensus 69 ~~~~ii~a~TGsGKTl~~ 86 (375)
+..+.|.++.|||||..+
T Consensus 4 ~~~I~i~G~~GSGKST~~ 21 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVA 21 (218)
T ss_dssp CEEEEEECCTTSCHHHHH
T ss_pred ceEEEEECCCCCCHHHHH
Confidence 346889999999999853
No 399
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=57.50 E-value=28 Score=34.98 Aligned_cols=68 Identities=9% Similarity=0.098 Sum_probs=47.5
Q ss_pred CceEEEEcccHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhc-CCCcEEEeC
Q 017196 101 CLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQ-SAVDILVAT 179 (375)
Q Consensus 101 ~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~IiV~T 179 (375)
+.++||.+|+++-+++++..+++. ++++..++|... ++..+... +..+|+|+|
T Consensus 410 ~~~~lVF~~s~~~~e~la~~L~~~----g~~v~~lHg~eR----------------------~~v~~~F~~g~~~VLVaT 463 (673)
T 2wv9_A 410 AGKTVWFVASVKMSNEIAQCLQRA----GKRVIQLNRKSY----------------------DTEYPKCKNGDWDFVITT 463 (673)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHTT----TCCEEEECSSSH----------------------HHHGGGGGTCCCSEEEEC
T ss_pred CCCEEEEECCHHHHHHHHHHHHhC----CCeEEEeChHHH----------------------HHHHHHHHCCCceEEEEC
Confidence 347999999999999988888765 688999998421 11122333 458999999
Q ss_pred cHHHHHHHhhcCCCCCCCccEEE
Q 017196 180 PGRLMDHINATRGFTLEHLCYLV 202 (375)
Q Consensus 180 p~~l~~~l~~~~~~~~~~~~~vI 202 (375)
.- +. .++++. +++||
T Consensus 464 dv-----~e--~GIDip-v~~VI 478 (673)
T 2wv9_A 464 DI-----SE--MGANFG-ASRVI 478 (673)
T ss_dssp GG-----GG--TTCCCC-CSEEE
T ss_pred ch-----hh--cceeeC-CcEEE
Confidence 42 22 457877 77766
No 400
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=57.37 E-value=25 Score=33.18 Aligned_cols=67 Identities=10% Similarity=0.061 Sum_probs=46.6
Q ss_pred ceEEEEcccHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhh-cCCCcEEEeCc
Q 017196 102 LRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQEL-QSAVDILVATP 180 (375)
Q Consensus 102 ~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~IiV~Tp 180 (375)
.++||.+||+.-+++++..+++. ++.+..+++.... +..+.. .+..+|+|+|.
T Consensus 189 ~~~lVF~~s~~~a~~l~~~L~~~----g~~~~~lh~~~~~----------------------~~~~~f~~g~~~vLVaT~ 242 (451)
T 2jlq_A 189 GKTVWFVPSIKAGNDIANCLRKS----GKRVIQLSRKTFD----------------------TEYPKTKLTDWDFVVTTD 242 (451)
T ss_dssp SCEEEECSSHHHHHHHHHHHHTT----TCCEEEECTTTHH----------------------HHGGGGGSSCCSEEEECG
T ss_pred CCEEEEcCCHHHHHHHHHHHHHc----CCeEEECCHHHHH----------------------HHHHhhccCCceEEEECC
Confidence 37999999999999999888764 6788888876431 111222 34589999994
Q ss_pred HHHHHHHhhcCCCCCCCccEEE
Q 017196 181 GRLMDHINATRGFTLEHLCYLV 202 (375)
Q Consensus 181 ~~l~~~l~~~~~~~~~~~~~vI 202 (375)
- +. .++++.. ++||
T Consensus 243 v-----~~--~GiDip~-~~VI 256 (451)
T 2jlq_A 243 I-----SE--MGANFRA-GRVI 256 (451)
T ss_dssp G-----GG--SSCCCCC-SEEE
T ss_pred H-----HH--hCcCCCC-CEEE
Confidence 2 22 4577777 6666
No 401
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=57.21 E-value=4.9 Score=33.32 Aligned_cols=16 Identities=31% Similarity=0.279 Sum_probs=13.3
Q ss_pred CEEEECCCCCchHHHh
Q 017196 71 DLCINSPTGSGKTLSY 86 (375)
Q Consensus 71 ~~ii~a~TGsGKTl~~ 86 (375)
.+.+.++.|||||...
T Consensus 4 ~i~l~G~~GsGKST~~ 19 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIA 19 (206)
T ss_dssp EEEEECSTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3678999999999853
No 402
>1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A*
Probab=57.14 E-value=4.4 Score=37.23 Aligned_cols=34 Identities=29% Similarity=0.411 Sum_probs=21.9
Q ss_pred HhhHHHHHH---hhCCCCCCCCE--EEECCCCCchHHHh
Q 017196 53 PVQVAVWQE---TIGPGLFERDL--CINSPTGSGKTLSY 86 (375)
Q Consensus 53 ~~Q~~~~~~---~~~~~~~~~~~--ii~a~TGsGKTl~~ 86 (375)
.-|.+.|+. ++..+..|.|+ +..+.||||||.+.
T Consensus 64 ~~Q~~Vy~~v~~lv~~~l~G~n~tifAYGqTGSGKTyTM 102 (347)
T 1f9v_A 64 DTNVDVFKEVGQLVQSSLDGYNVCIFAYGQTGSGKTFTM 102 (347)
T ss_dssp CCHHHHHHHHHHHHGGGGGTCCEEEEEECCTTSSHHHHH
T ss_pred CCHHHHHHHHHHHHHHhcCCceeEEEEECCCCCCCcEec
Confidence 345544443 34555578775 44489999999874
No 403
>1vee_A Proline-rich protein family; hypothetical protein, structural genomics, rhodanese domain, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} PDB: 2dcq_A
Probab=57.12 E-value=11 Score=28.86 Aligned_cols=36 Identities=6% Similarity=0.010 Sum_probs=30.7
Q ss_pred CCeEEEEcCChhhHHHHHHHHHHhcCCcc-eEEecccccc
Q 017196 332 EEKCIVFTSSVESTHRLCTLLNHFGELRI-KIKEYSGLQR 370 (375)
Q Consensus 332 ~~k~lIF~~s~~~a~~l~~~L~~~g~~~~-~~~~lh~~~~ 370 (375)
..++++||.+=..+...+..|+..| + ++..+.|++.
T Consensus 74 ~~~ivv~C~sG~RS~~aa~~L~~~G---~~~v~~l~GG~~ 110 (134)
T 1vee_A 74 NTTLYILDKFDGNSELVAELVALNG---FKSAYAIKDGAE 110 (134)
T ss_dssp GCEEEEECSSSTTHHHHHHHHHHHT---CSEEEECTTTTT
T ss_pred CCEEEEEeCCCCcHHHHHHHHHHcC---CcceEEecCCcc
Confidence 4689999999999999999999766 6 5888999983
No 404
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=57.05 E-value=5 Score=32.80 Aligned_cols=15 Identities=27% Similarity=0.452 Sum_probs=13.1
Q ss_pred EEEECCCCCchHHHh
Q 017196 72 LCINSPTGSGKTLSY 86 (375)
Q Consensus 72 ~ii~a~TGsGKTl~~ 86 (375)
+++.++.|||||..+
T Consensus 3 I~l~G~~GsGKsT~~ 17 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQI 17 (197)
T ss_dssp EEEECSTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 788999999999864
No 405
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=57.04 E-value=4.4 Score=34.93 Aligned_cols=17 Identities=18% Similarity=0.198 Sum_probs=15.4
Q ss_pred CCCCEEEECCCCCchHH
Q 017196 68 FERDLCINSPTGSGKTL 84 (375)
Q Consensus 68 ~~~~~ii~a~TGsGKTl 84 (375)
.|.-+.|.+|+|+|||.
T Consensus 30 ~Ge~~~i~G~nGsGKST 46 (237)
T 2cbz_A 30 EGALVAVVGQVGCGKSS 46 (237)
T ss_dssp TTCEEEEECSTTSSHHH
T ss_pred CCCEEEEECCCCCCHHH
Confidence 67778999999999997
No 406
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=56.89 E-value=5.1 Score=32.61 Aligned_cols=16 Identities=31% Similarity=0.351 Sum_probs=13.4
Q ss_pred CEEEECCCCCchHHHh
Q 017196 71 DLCINSPTGSGKTLSY 86 (375)
Q Consensus 71 ~~ii~a~TGsGKTl~~ 86 (375)
.+++.++.|||||..+
T Consensus 2 ~I~l~G~~GsGKsT~~ 17 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQA 17 (195)
T ss_dssp EEEEECSTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3788999999999854
No 407
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=56.81 E-value=5.1 Score=41.33 Aligned_cols=20 Identities=35% Similarity=0.494 Sum_probs=16.9
Q ss_pred CCCCCEEEECCCCCchHHHh
Q 017196 67 LFERDLCINSPTGSGKTLSY 86 (375)
Q Consensus 67 ~~~~~~ii~a~TGsGKTl~~ 86 (375)
..+..+++.+|+|||||..+
T Consensus 236 ~~~~~vLL~Gp~GtGKTtLa 255 (806)
T 1ypw_A 236 KPPRGILLYGPPGTGKTLIA 255 (806)
T ss_dssp CCCCEEEECSCTTSSHHHHH
T ss_pred CCCCeEEEECcCCCCHHHHH
Confidence 46778999999999999753
No 408
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=56.68 E-value=3.8 Score=36.09 Aligned_cols=23 Identities=22% Similarity=0.189 Sum_probs=18.4
Q ss_pred CCCCCCCEEEECCCCCchHHHhH
Q 017196 65 PGLFERDLCINSPTGSGKTLSYA 87 (375)
Q Consensus 65 ~~~~~~~~ii~a~TGsGKTl~~~ 87 (375)
.+..|.-++|.+|.|+|||..+.
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~ 48 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLAL 48 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHH
T ss_pred CccCCCEEEEEcCCCCCHHHHHH
Confidence 34478889999999999997543
No 409
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=56.58 E-value=4.4 Score=34.13 Aligned_cols=18 Identities=28% Similarity=0.438 Sum_probs=15.2
Q ss_pred CCCEEEECCCCCchHHHh
Q 017196 69 ERDLCINSPTGSGKTLSY 86 (375)
Q Consensus 69 ~~~~ii~a~TGsGKTl~~ 86 (375)
+..+++.++.|||||..+
T Consensus 5 ~~~I~l~G~~GsGKsT~a 22 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQC 22 (217)
T ss_dssp CCEEEEEECTTSSHHHHH
T ss_pred ceEEEEECCCCCCHHHHH
Confidence 456899999999999854
No 410
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=56.46 E-value=12 Score=33.83 Aligned_cols=19 Identities=32% Similarity=0.321 Sum_probs=14.8
Q ss_pred CCCEEEECCCCCchHHHhH
Q 017196 69 ERDLCINSPTGSGKTLSYA 87 (375)
Q Consensus 69 ~~~~ii~a~TGsGKTl~~~ 87 (375)
++-+++.+++|+|||....
T Consensus 105 ~~vI~ivG~~G~GKTT~~~ 123 (320)
T 1zu4_A 105 LNIFMLVGVNGTGKTTSLA 123 (320)
T ss_dssp CEEEEEESSTTSSHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 3457888999999997643
No 411
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=56.31 E-value=4.7 Score=33.39 Aligned_cols=16 Identities=19% Similarity=0.339 Sum_probs=13.5
Q ss_pred CEEEECCCCCchHHHh
Q 017196 71 DLCINSPTGSGKTLSY 86 (375)
Q Consensus 71 ~~ii~a~TGsGKTl~~ 86 (375)
.+.|.++.|||||..+
T Consensus 3 ~i~i~G~~GsGKSTl~ 18 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVA 18 (204)
T ss_dssp EEEEEECTTSSHHHHH
T ss_pred EEEEECCCCcCHHHHH
Confidence 4789999999999853
No 412
>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora crassa}
Probab=56.22 E-value=4.1 Score=38.77 Aligned_cols=34 Identities=21% Similarity=0.252 Sum_probs=22.3
Q ss_pred HhhHHHHHHh----hCCCCCCCCE--EEECCCCCchHHHh
Q 017196 53 PVQVAVWQET----IGPGLFERDL--CINSPTGSGKTLSY 86 (375)
Q Consensus 53 ~~Q~~~~~~~----~~~~~~~~~~--ii~a~TGsGKTl~~ 86 (375)
.-|.+.|+.+ +..+..|.|+ +..+.||||||.+.
T Consensus 115 asQ~~Vy~~~~~plv~~~l~GyN~tIfAYGQTGSGKTyTM 154 (443)
T 2owm_A 115 ATQEHVYDSLGEEFLDHNFEGYHTCIFAYGQTGSGKSYTM 154 (443)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred CCHHHHHHhhhhhHHHHhhcCCceEEEEeCCCCCCCCEEe
Confidence 4577766544 2334467774 44489999999874
No 413
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=56.18 E-value=20 Score=32.21 Aligned_cols=20 Identities=10% Similarity=0.081 Sum_probs=16.0
Q ss_pred CCCCCCEEEECCCCCchHHH
Q 017196 66 GLFERDLCINSPTGSGKTLS 85 (375)
Q Consensus 66 ~~~~~~~ii~a~TGsGKTl~ 85 (375)
...|.-+.|.+|+|||||..
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL 106 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTT 106 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHH
T ss_pred CCCCEEEEEECCCCchHHHH
Confidence 34566688899999999974
No 414
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=56.08 E-value=9.5 Score=35.41 Aligned_cols=28 Identities=21% Similarity=0.082 Sum_probs=20.4
Q ss_pred HHHHhhCCCCCCCCEEEECCCCCchHHH
Q 017196 58 VWQETIGPGLFERDLCINSPTGSGKTLS 85 (375)
Q Consensus 58 ~~~~~~~~~~~~~~~ii~a~TGsGKTl~ 85 (375)
++..+--.+..|+.+.+.+|.|+|||..
T Consensus 158 ~l~~~~~~i~~~~~i~l~G~~GsGKSTl 185 (377)
T 1svm_A 158 FLKCMVYNIPKKRYWLFKGPIDSGKTTL 185 (377)
T ss_dssp HHHHHHHCCTTCCEEEEECSTTSSHHHH
T ss_pred HHHhcccccCCCCEEEEECCCCCCHHHH
Confidence 3444333455778899999999999974
No 415
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=56.06 E-value=4.5 Score=33.91 Aligned_cols=16 Identities=13% Similarity=0.111 Sum_probs=13.7
Q ss_pred CEEEECCCCCchHHHh
Q 017196 71 DLCINSPTGSGKTLSY 86 (375)
Q Consensus 71 ~~ii~a~TGsGKTl~~ 86 (375)
.+++.++.|||||..+
T Consensus 2 ~I~l~G~~GsGKsT~a 17 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQA 17 (214)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4789999999999854
No 416
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=56.01 E-value=5.8 Score=34.09 Aligned_cols=17 Identities=35% Similarity=0.350 Sum_probs=14.7
Q ss_pred CCCEEEECCCCCchHHH
Q 017196 69 ERDLCINSPTGSGKTLS 85 (375)
Q Consensus 69 ~~~~ii~a~TGsGKTl~ 85 (375)
+..+.|.+|.|||||..
T Consensus 27 ~~~i~l~G~~GsGKSTl 43 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTV 43 (246)
T ss_dssp CCEEEEECCTTSSHHHH
T ss_pred CcEEEEECCCCCCHHHH
Confidence 46789999999999974
No 417
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=55.95 E-value=17 Score=34.26 Aligned_cols=33 Identities=9% Similarity=0.035 Sum_probs=28.8
Q ss_pred ceEEEEcccHHHHHHHHHHHHHhccccCceEEEeecC
Q 017196 102 LRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQ 138 (375)
Q Consensus 102 ~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~~~ 138 (375)
.++||.+|+++-+++++..+++. +.++..++|+
T Consensus 172 ~~~lVF~~~~~~~~~l~~~L~~~----~~~v~~lhg~ 204 (431)
T 2v6i_A 172 GRTVWFVHSIKQGAEIGTCLQKA----GKKVLYLNRK 204 (431)
T ss_dssp SCEEEECSSHHHHHHHHHHHHHT----TCCEEEESTT
T ss_pred CCEEEEeCCHHHHHHHHHHHHHc----CCeEEEeCCc
Confidence 37999999999999999988876 6789999986
No 418
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=55.51 E-value=10 Score=34.69 Aligned_cols=24 Identities=21% Similarity=0.448 Sum_probs=18.5
Q ss_pred CCCCCCCCCCHHHHHHHHhCCCCC
Q 017196 27 CPLDHLPCLDPRLKVALQNMGISS 50 (375)
Q Consensus 27 ~~~~~~~~l~~~i~~~l~~~g~~~ 50 (375)
.+++.++++++...+.|.+.||.+
T Consensus 35 ~~l~~l~Gi~~~~~~kL~~ag~~t 58 (349)
T 1pzn_A 35 RSIEDLPGVGPATAEKLREAGYDT 58 (349)
T ss_dssp CCSSCCTTCCHHHHHHHHTTTCCS
T ss_pred ccHHHcCCCCHHHHHHHHHcCCCc
Confidence 356666778888888888888875
No 419
>2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, structural protein; HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D*
Probab=55.48 E-value=4 Score=38.07 Aligned_cols=36 Identities=22% Similarity=0.134 Sum_probs=22.4
Q ss_pred ccHhhHHHHHHh----hCCCCCCCCE--EEECCCCCchHHHh
Q 017196 51 LFPVQVAVWQET----IGPGLFERDL--CINSPTGSGKTLSY 86 (375)
Q Consensus 51 ~~~~Q~~~~~~~----~~~~~~~~~~--ii~a~TGsGKTl~~ 86 (375)
+..-|.+.|+.+ +..+..|.|+ +..+.||||||.+.
T Consensus 111 ~~~sQ~~Vy~~~~~plv~~~l~G~N~tifAYGQTGSGKTyTM 152 (387)
T 2heh_A 111 ETASNEVVYRFTARPLVQTIFEGGKATCFAYGQTGSGKTHTM 152 (387)
T ss_dssp TTCCHHHHHHHTTHHHHHHHHTTCEEEEEEESCTTSSHHHHH
T ss_pred cCCCceeehhhhHHHHHHHHhcCCceEEEEecCCCCCCCeEe
Confidence 344566665543 2333467764 44489999999874
No 420
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=55.18 E-value=7.2 Score=32.11 Aligned_cols=45 Identities=13% Similarity=0.171 Sum_probs=23.4
Q ss_pred EEEECCCCCchHHHhHHHHHHHhhhcccCCceEEEEcccHHHHHHHHHHHHHh
Q 017196 72 LCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAI 124 (375)
Q Consensus 72 ~ii~a~TGsGKTl~~~l~il~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~ 124 (375)
++|.+++|||||. |+.-+. .. +..++|+......-.++.+.+..+
T Consensus 2 ilV~Gg~~SGKS~-~A~~la---~~----~~~~~yiaT~~~~d~e~~~rI~~h 46 (180)
T 1c9k_A 2 ILVTGGARSGKSR-HAEALI---GD----APQVLYIATSQILDDEMAARIQHH 46 (180)
T ss_dssp EEEEECTTSSHHH-HHHHHH---CS----CSSEEEEECCCC------CHHHHH
T ss_pred EEEECCCCCcHHH-HHHHHH---hc----CCCeEEEecCCCCCHHHHHHHHHH
Confidence 6889999999996 333222 11 224777776544333444444433
No 421
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=55.15 E-value=5.4 Score=36.87 Aligned_cols=16 Identities=25% Similarity=0.569 Sum_probs=13.3
Q ss_pred CEEEECCCCCchHHHh
Q 017196 71 DLCINSPTGSGKTLSY 86 (375)
Q Consensus 71 ~~ii~a~TGsGKTl~~ 86 (375)
-.+|.+|+|+|||..+
T Consensus 25 ~~~i~G~NGaGKTTll 40 (365)
T 3qf7_A 25 ITVVEGPNGAGKSSLF 40 (365)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 4678999999999753
No 422
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=55.15 E-value=7.9 Score=33.52 Aligned_cols=18 Identities=22% Similarity=0.506 Sum_probs=15.4
Q ss_pred CCCCEEEECCCCCchHHH
Q 017196 68 FERDLCINSPTGSGKTLS 85 (375)
Q Consensus 68 ~~~~~ii~a~TGsGKTl~ 85 (375)
.+..+.|.+|+|||||..
T Consensus 26 ~g~~I~I~G~~GsGKSTl 43 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTL 43 (252)
T ss_dssp TSCEEEEECCTTSSHHHH
T ss_pred CCcEEEEECCCCCCHHHH
Confidence 456789999999999975
No 423
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=54.99 E-value=14 Score=30.02 Aligned_cols=24 Identities=21% Similarity=-0.029 Sum_probs=16.1
Q ss_pred CEEEECCCCCchHHHhHHHHHHHhh
Q 017196 71 DLCINSPTGSGKTLSYALPIVQTLS 95 (375)
Q Consensus 71 ~~ii~a~TGsGKTl~~~l~il~~l~ 95 (375)
-+.+.++.|||||.. +..++..+.
T Consensus 6 ~i~i~G~sGsGKTTl-~~~L~~~l~ 29 (169)
T 1xjc_A 6 VWQVVGYKHSGKTTL-MEKWVAAAV 29 (169)
T ss_dssp EEEEECCTTSSHHHH-HHHHHHHHH
T ss_pred EEEEECCCCCCHHHH-HHHHHHhhH
Confidence 367889999999974 333444443
No 424
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=54.83 E-value=11 Score=35.16 Aligned_cols=21 Identities=10% Similarity=-0.194 Sum_probs=16.4
Q ss_pred CCCCCCEEEECCCCCchHHHh
Q 017196 66 GLFERDLCINSPTGSGKTLSY 86 (375)
Q Consensus 66 ~~~~~~~ii~a~TGsGKTl~~ 86 (375)
+..|.-+.|.+|.|+|||..+
T Consensus 175 I~~Gei~~I~G~sGsGKTTLl 195 (400)
T 3lda_A 175 VETGSITELFGEFRTGKSQLC 195 (400)
T ss_dssp EETTSEEEEEESTTSSHHHHH
T ss_pred cCCCcEEEEEcCCCCChHHHH
Confidence 335566899999999999754
No 425
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=54.35 E-value=9 Score=32.54 Aligned_cols=21 Identities=19% Similarity=0.181 Sum_probs=15.9
Q ss_pred CCCCEEEECCCCCchHHHhHH
Q 017196 68 FERDLCINSPTGSGKTLSYAL 88 (375)
Q Consensus 68 ~~~~~ii~a~TGsGKTl~~~l 88 (375)
+.+-+++.+|.||||+..+..
T Consensus 28 k~kiI~llGpPGsGKgTqa~~ 48 (217)
T 3umf_A 28 KAKVIFVLGGPGSGKGTQCEK 48 (217)
T ss_dssp SCEEEEEECCTTCCHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHH
Confidence 455577889999999876433
No 426
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=54.33 E-value=5.8 Score=33.57 Aligned_cols=16 Identities=38% Similarity=0.528 Sum_probs=13.7
Q ss_pred CEEEECCCCCchHHHh
Q 017196 71 DLCINSPTGSGKTLSY 86 (375)
Q Consensus 71 ~~ii~a~TGsGKTl~~ 86 (375)
.+++.++.|||||..+
T Consensus 2 ~I~l~G~~GsGKsT~a 17 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQG 17 (223)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4789999999999854
No 427
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=54.21 E-value=5.8 Score=34.15 Aligned_cols=19 Identities=21% Similarity=0.174 Sum_probs=16.0
Q ss_pred CCCCEEEECCCCCchHHHh
Q 017196 68 FERDLCINSPTGSGKTLSY 86 (375)
Q Consensus 68 ~~~~~ii~a~TGsGKTl~~ 86 (375)
.+..+++.++.|||||..+
T Consensus 28 ~~~~I~l~G~~GsGKsT~a 46 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQS 46 (243)
T ss_dssp CCEEEEEECCTTSSHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 4567999999999999854
No 428
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=54.09 E-value=5 Score=34.03 Aligned_cols=31 Identities=13% Similarity=0.029 Sum_probs=21.8
Q ss_pred CCCccEEEEecchhhhhHhHHhHHHHHHHhh
Q 017196 195 LEHLCYLVVDETDRLLREAYQAWLPTVLQLT 225 (375)
Q Consensus 195 ~~~~~~vIiDE~h~l~~~~~~~~l~~i~~~l 225 (375)
..+.+++++||--.-++......+..++..+
T Consensus 149 ~~~p~lllLDEPts~LD~~~~~~l~~~l~~~ 179 (214)
T 1sgw_A 149 LVNAEIYVLDDPVVAIDEDSKHKVLKSILEI 179 (214)
T ss_dssp TSCCSEEEEESTTTTSCTTTHHHHHHHHHHH
T ss_pred HhCCCEEEEECCCcCCCHHHHHHHHHHHHHH
Confidence 4678899999998887776555555555444
No 429
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=53.98 E-value=22 Score=32.58 Aligned_cols=75 Identities=15% Similarity=0.288 Sum_probs=46.1
Q ss_pred ceEEEEcccHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhc-CCCcEEEeCc
Q 017196 102 LRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQ-SAVDILVATP 180 (375)
Q Consensus 102 ~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~IiV~Tp 180 (375)
.++||.+++++-++.+.+.+.+. ++.+..++|+........ ..+... +..+|+|+|.
T Consensus 281 ~~~lvf~~~~~~~~~l~~~l~~~----~~~~~~~h~~~~~~~r~~------------------~~~~f~~g~~~vlv~T~ 338 (414)
T 3eiq_A 281 TQAVIFINTRRKVDWLTEKMHAR----DFTVSAMHGDMDQKERDV------------------IMREFRSGSSRVLITTD 338 (414)
T ss_dssp SSCEEECSCHHHHHHHHHHHHTT----TCCCEEC---CHHHHHHH------------------HHHHHSCC---CEEECS
T ss_pred CcEEEEeCCHHHHHHHHHHHHhc----CCeEEEecCCCCHHHHHH------------------HHHHHHcCCCcEEEECC
Confidence 47999999999999888888754 677888888876544422 222333 3478999994
Q ss_pred HHHHHHHhhcCCCCCCCccEEEEec
Q 017196 181 GRLMDHINATRGFTLEHLCYLVVDE 205 (375)
Q Consensus 181 ~~l~~~l~~~~~~~~~~~~~vIiDE 205 (375)
- +. .++++..+++||.-.
T Consensus 339 ~-----~~--~Gidip~v~~Vi~~~ 356 (414)
T 3eiq_A 339 L-----LA--RGIDVQQVSLVINYD 356 (414)
T ss_dssp S-----CC----CCGGGCSCEEESS
T ss_pred c-----cc--cCCCccCCCEEEEeC
Confidence 2 11 357777888877543
No 430
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=53.80 E-value=31 Score=33.05 Aligned_cols=110 Identities=16% Similarity=0.152 Sum_probs=46.3
Q ss_pred CCCchHHHhHHHHHHHhhhcccCCceEEEEcccHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHHhhcCccccC
Q 017196 78 TGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAG 157 (375)
Q Consensus 78 TGsGKTl~~~l~il~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (375)
..++|-.. +.-++...... ..+.++||.++++.-++.+.+.++......++++..++|..........
T Consensus 369 ~~~~K~~~-L~~~l~~~~~~-~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~---------- 436 (556)
T 4a2p_A 369 NENPKLEE-LVCILDDAYRY-NPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGM---------- 436 (556)
T ss_dssp SCCHHHHH-HHHHHHHHHHH-CTTCCEEEEESSHHHHHHHHHHHTTCSGGGSCCEEC-----------------------
T ss_pred CCChHHHH-HHHHHHHHhcC-CCCceEEEEEccHHHHHHHHHHHHhCCCcceeeeeEEEccCCccccccc----------
Confidence 34677654 33333322211 2345899999999999999998876533334555555543211000000
Q ss_pred ccCCchhHHHhhc--CCCcEEEeCcHHHHHHHhhcCCCCCCCccEEEEecc
Q 017196 158 ICYDPEDVLQELQ--SAVDILVATPGRLMDHINATRGFTLEHLCYLVVDET 206 (375)
Q Consensus 158 ~~~~~~~~~~~~~--~~~~IiV~Tp~~l~~~l~~~~~~~~~~~~~vIiDE~ 206 (375)
......+..+... +..+|+|+|.- +. .++++..+++||.=+.
T Consensus 437 ~~~~R~~~~~~F~~~g~~~vLvaT~~-----~~--~GiDip~v~~VI~~d~ 480 (556)
T 4a2p_A 437 TLPSQKGVLDAFKTSKDNRLLIATSV-----AD--EGIDIVQCNLVVLYEY 480 (556)
T ss_dssp -----------------CCEEEEEC------------------CEEEEETC
T ss_pred CHHHHHHHHHHhcccCceEEEEEcCc-----hh--cCCCchhCCEEEEeCC
Confidence 0000112222333 34789999942 11 4588888998886444
No 431
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=53.78 E-value=5.3 Score=34.96 Aligned_cols=30 Identities=10% Similarity=0.091 Sum_probs=21.3
Q ss_pred CCccEEEEecchhhhhHhHHhHHHHHHHhh
Q 017196 196 EHLCYLVVDETDRLLREAYQAWLPTVLQLT 225 (375)
Q Consensus 196 ~~~~~vIiDE~h~l~~~~~~~~l~~i~~~l 225 (375)
.+.+++++||.=.-++......+..++..+
T Consensus 172 ~~p~lllLDEPts~LD~~~~~~i~~~l~~l 201 (260)
T 2ghi_A 172 KDPKIVIFDEATSSLDSKTEYLFQKAVEDL 201 (260)
T ss_dssp HCCSEEEEECCCCTTCHHHHHHHHHHHHHH
T ss_pred cCCCEEEEECccccCCHHHHHHHHHHHHHh
Confidence 456799999998888876655555555444
No 432
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=53.25 E-value=4.9 Score=34.72 Aligned_cols=25 Identities=16% Similarity=0.445 Sum_probs=18.6
Q ss_pred CCCCEEEECCCCCchHHHhHHHHHHHh
Q 017196 68 FERDLCINSPTGSGKTLSYALPIVQTL 94 (375)
Q Consensus 68 ~~~~~ii~a~TGsGKTl~~~l~il~~l 94 (375)
.|.-+.|.+|+|+|||. ++-++.-+
T Consensus 27 ~Ge~~~i~G~nGsGKST--Ll~~l~Gl 51 (243)
T 1mv5_A 27 PNSIIAFAGPSGGGKST--IFSLLERF 51 (243)
T ss_dssp TTEEEEEECCTTSSHHH--HHHHHTTS
T ss_pred CCCEEEEECCCCCCHHH--HHHHHhcC
Confidence 67778999999999997 34444433
No 433
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=52.95 E-value=7.5 Score=35.87 Aligned_cols=16 Identities=31% Similarity=0.320 Sum_probs=13.4
Q ss_pred CCEEEECCCCCchHHH
Q 017196 70 RDLCINSPTGSGKTLS 85 (375)
Q Consensus 70 ~~~ii~a~TGsGKTl~ 85 (375)
.-.+|.++||+|||..
T Consensus 26 gl~vi~G~NGaGKT~i 41 (371)
T 3auy_A 26 GIVAIIGENGSGKSSI 41 (371)
T ss_dssp EEEEEEECTTSSHHHH
T ss_pred CeEEEECCCCCCHHHH
Confidence 3468899999999985
No 434
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=52.90 E-value=7.2 Score=37.74 Aligned_cols=17 Identities=29% Similarity=0.462 Sum_probs=14.6
Q ss_pred CCEEEECCCCCchHHHh
Q 017196 70 RDLCINSPTGSGKTLSY 86 (375)
Q Consensus 70 ~~~ii~a~TGsGKTl~~ 86 (375)
+.+++.+|+|+|||+.+
T Consensus 65 ~GvLL~GppGtGKTtLa 81 (499)
T 2dhr_A 65 KGVLLVGPPGVGKTHLA 81 (499)
T ss_dssp SEEEEECSSSSSHHHHH
T ss_pred ceEEEECCCCCCHHHHH
Confidence 45999999999999853
No 435
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=52.47 E-value=6.4 Score=33.85 Aligned_cols=19 Identities=21% Similarity=0.114 Sum_probs=15.3
Q ss_pred CCCCEEEECCCCCchHHHh
Q 017196 68 FERDLCINSPTGSGKTLSY 86 (375)
Q Consensus 68 ~~~~~ii~a~TGsGKTl~~ 86 (375)
.|.-+-|.+|.|||||..+
T Consensus 24 ~g~iigI~G~~GsGKSTl~ 42 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVC 42 (245)
T ss_dssp CSEEEEEECSTTSSHHHHH
T ss_pred CCEEEEEECCCCCCHHHHH
Confidence 4555788899999999854
No 436
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=52.24 E-value=10 Score=31.68 Aligned_cols=15 Identities=33% Similarity=0.213 Sum_probs=12.8
Q ss_pred CEEEECCCCCchHHH
Q 017196 71 DLCINSPTGSGKTLS 85 (375)
Q Consensus 71 ~~ii~a~TGsGKTl~ 85 (375)
-.+|.+|+|+|||..
T Consensus 25 ~~~I~G~NgsGKSti 39 (203)
T 3qks_A 25 INLIIGQNGSGKSSL 39 (203)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred eEEEEcCCCCCHHHH
Confidence 468889999999975
No 437
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=52.17 E-value=5.9 Score=34.68 Aligned_cols=32 Identities=16% Similarity=0.063 Sum_probs=22.4
Q ss_pred CCCccEEEEecchhhhhHhHHhHHHHHHHhhh
Q 017196 195 LEHLCYLVVDETDRLLREAYQAWLPTVLQLTR 226 (375)
Q Consensus 195 ~~~~~~vIiDE~h~l~~~~~~~~l~~i~~~l~ 226 (375)
..+.+++++||-=.-++......+..++..+.
T Consensus 169 ~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~ 200 (262)
T 1b0u_A 169 AMEPDVLLFDEPTSALDPELVGEVLRIMQQLA 200 (262)
T ss_dssp HTCCSEEEEESTTTTSCHHHHHHHHHHHHHHH
T ss_pred hcCCCEEEEeCCCccCCHHHHHHHHHHHHHHH
Confidence 35678999999988777765555555555543
No 438
>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A*
Probab=52.05 E-value=4.3 Score=37.60 Aligned_cols=36 Identities=25% Similarity=0.147 Sum_probs=23.0
Q ss_pred ccHhhHHHHHHh----hCCCCCCCCE--EEECCCCCchHHHh
Q 017196 51 LFPVQVAVWQET----IGPGLFERDL--CINSPTGSGKTLSY 86 (375)
Q Consensus 51 ~~~~Q~~~~~~~----~~~~~~~~~~--ii~a~TGsGKTl~~ 86 (375)
+..-|.+.|+.+ +..+..|.|+ +..+.||||||.+.
T Consensus 61 ~~~~Q~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTm 102 (365)
T 2y65_A 61 PNASQEKVYNEAAKSIVTDVLAGYNGTIFAYGQTSSGKTHTM 102 (365)
T ss_dssp TTCCHHHHHHHHTHHHHHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred CCCCHHHHHHHhhhhHHHHHhCCCceEEEeecCCCCCCceEE
Confidence 445666665543 2334467774 44589999999874
No 439
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=51.81 E-value=7.4 Score=31.97 Aligned_cols=19 Identities=16% Similarity=0.064 Sum_probs=16.1
Q ss_pred CCCCEEEECCCCCchHHHh
Q 017196 68 FERDLCINSPTGSGKTLSY 86 (375)
Q Consensus 68 ~~~~~ii~a~TGsGKTl~~ 86 (375)
.|+-+++.++.|+|||..+
T Consensus 15 ~G~gvli~G~SGaGKStla 33 (181)
T 3tqf_A 15 DKMGVLITGEANIGKSELS 33 (181)
T ss_dssp TTEEEEEEESSSSSHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHH
Confidence 4677999999999999654
No 440
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=51.71 E-value=7 Score=32.46 Aligned_cols=17 Identities=18% Similarity=0.307 Sum_probs=13.9
Q ss_pred CCEEEECCCCCchHHHh
Q 017196 70 RDLCINSPTGSGKTLSY 86 (375)
Q Consensus 70 ~~~ii~a~TGsGKTl~~ 86 (375)
..+.+.++.|||||..+
T Consensus 13 ~iIgltG~~GSGKSTva 29 (192)
T 2grj_A 13 MVIGVTGKIGTGKSTVC 29 (192)
T ss_dssp EEEEEECSTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 34788899999999854
No 441
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=51.46 E-value=10 Score=35.51 Aligned_cols=20 Identities=35% Similarity=0.418 Sum_probs=15.1
Q ss_pred CCCCCE--EEECCCCCchHHHh
Q 017196 67 LFERDL--CINSPTGSGKTLSY 86 (375)
Q Consensus 67 ~~~~~~--ii~a~TGsGKTl~~ 86 (375)
..|.|+ +..+.||||||.+.
T Consensus 137 l~G~N~tifAYGqTGSGKTyTM 158 (403)
T 4etp_A 137 LDGYNVAIFAYGQTGSGKTFTM 158 (403)
T ss_dssp HTTCCEEEEEESCTTSSHHHHH
T ss_pred hCCcceEEEEECCCCCCCceEe
Confidence 367775 44489999999875
No 442
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=51.36 E-value=27 Score=36.53 Aligned_cols=58 Identities=17% Similarity=0.125 Sum_probs=34.8
Q ss_pred CCchHHHhHHHHHHHhhhcccCCceEEEEcccHHHHHHHHHHHHHhccccCceEEEeecC
Q 017196 79 GSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQ 138 (375)
Q Consensus 79 GsGKTl~~~l~il~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~~~ 138 (375)
.++|... +.-++...... ..+.++||.++++..++.+.+.+.......++++..+.|.
T Consensus 611 ~~~K~~~-L~~lL~~~~~~-~~~~rvLIF~~t~~~ae~L~~~L~~~~~l~~ik~~~l~G~ 668 (936)
T 4a2w_A 611 ENPKLEE-LVCILDDAYRY-NPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGR 668 (936)
T ss_dssp CCHHHHH-HHHHHHHTTTS-CTTCCEEEEESSHHHHHHHHHHHHHCSTTSSCCCEEC---
T ss_pred CCHHHHH-HHHHHHHHhcc-CCCCeEEEEeCCHHHHHHHHHHHhhCccccccceeEEecC
Confidence 4666543 33344333221 2346899999999999999999987633334555555443
No 443
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=51.30 E-value=8.1 Score=31.67 Aligned_cols=17 Identities=29% Similarity=0.268 Sum_probs=14.0
Q ss_pred CCEEEECCCCCchHHHh
Q 017196 70 RDLCINSPTGSGKTLSY 86 (375)
Q Consensus 70 ~~~ii~a~TGsGKTl~~ 86 (375)
..+.|.+++|||||..+
T Consensus 9 ~~I~i~G~~GsGKST~~ 25 (203)
T 1uf9_A 9 IIIGITGNIGSGKSTVA 25 (203)
T ss_dssp EEEEEEECTTSCHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 35788899999999854
No 444
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=51.18 E-value=6.9 Score=33.45 Aligned_cols=17 Identities=35% Similarity=0.433 Sum_probs=15.2
Q ss_pred CCCCEEEECCCCCchHH
Q 017196 68 FERDLCINSPTGSGKTL 84 (375)
Q Consensus 68 ~~~~~ii~a~TGsGKTl 84 (375)
.|.-+.+.+|.|+|||.
T Consensus 33 ~Ge~~~i~G~nGsGKST 49 (229)
T 2pze_A 33 RGQLLAVAGSTGAGKTS 49 (229)
T ss_dssp TTCEEEEECCTTSSHHH
T ss_pred CCCEEEEECCCCCCHHH
Confidence 67778999999999997
No 445
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=51.04 E-value=15 Score=34.77 Aligned_cols=18 Identities=33% Similarity=0.346 Sum_probs=15.0
Q ss_pred CCEEEECCCCCchHHHhH
Q 017196 70 RDLCINSPTGSGKTLSYA 87 (375)
Q Consensus 70 ~~~ii~a~TGsGKTl~~~ 87 (375)
..+++.+++|+|||..+.
T Consensus 100 ~vI~ivG~~GvGKTTla~ 117 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTTAA 117 (432)
T ss_dssp CCEEEECCSSSSTTHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 478999999999997643
No 446
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=50.86 E-value=11 Score=32.13 Aligned_cols=21 Identities=29% Similarity=0.415 Sum_probs=17.1
Q ss_pred CCCCCCEEEECCCCCchHHHh
Q 017196 66 GLFERDLCINSPTGSGKTLSY 86 (375)
Q Consensus 66 ~~~~~~~ii~a~TGsGKTl~~ 86 (375)
...|..+++.++.|+|||...
T Consensus 23 ~~~g~~i~i~G~~GsGKsT~~ 43 (229)
T 4eaq_A 23 NAMSAFITFEGPEGSGKTTVI 43 (229)
T ss_dssp CCCCEEEEEECCTTSCHHHHH
T ss_pred cCCCeEEEEEcCCCCCHHHHH
Confidence 346778999999999999853
No 447
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=50.85 E-value=6.4 Score=34.36 Aligned_cols=32 Identities=13% Similarity=0.081 Sum_probs=23.3
Q ss_pred CCCccEEEEecchhhhhHhHHhHHHHHHHhhh
Q 017196 195 LEHLCYLVVDETDRLLREAYQAWLPTVLQLTR 226 (375)
Q Consensus 195 ~~~~~~vIiDE~h~l~~~~~~~~l~~i~~~l~ 226 (375)
..+.+++++||-=.-++......+..++..+.
T Consensus 162 ~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~ 193 (256)
T 1vpl_A 162 MVNPRLAILDEPTSGLDVLNAREVRKILKQAS 193 (256)
T ss_dssp TTCCSEEEEESTTTTCCHHHHHHHHHHHHHHH
T ss_pred HcCCCEEEEeCCccccCHHHHHHHHHHHHHHH
Confidence 46788999999988888766655655555543
No 448
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=50.82 E-value=16 Score=36.59 Aligned_cols=66 Identities=12% Similarity=0.124 Sum_probs=47.0
Q ss_pred CceEEEEcccHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcCCCcEEEeCc
Q 017196 101 CLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATP 180 (375)
Q Consensus 101 ~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiV~Tp 180 (375)
..++||.++|++-++++.+.+++. ++++..++|+..... .-.++.+|+|+|.
T Consensus 396 ~~~vLVFv~Tr~~ae~la~~L~~~----g~~v~~lHG~l~q~e------------------------r~~~~~~VLVATd 447 (666)
T 3o8b_A 396 GGRHLIFCHSKKKCDELAAKLSGL----GINAVAYYRGLDVSV------------------------IPTIGDVVVVATD 447 (666)
T ss_dssp SSEEEEECSCHHHHHHHHHHHHTT----TCCEEEECTTSCGGG------------------------SCSSSCEEEEECT
T ss_pred CCcEEEEeCCHHHHHHHHHHHHhC----CCcEEEecCCCCHHH------------------------HHhCCCcEEEECC
Confidence 347999999999999999888864 688999999865321 1124459999994
Q ss_pred HHHHHHHhhcCCCCCCCccEEE
Q 017196 181 GRLMDHINATRGFTLEHLCYLV 202 (375)
Q Consensus 181 ~~l~~~l~~~~~~~~~~~~~vI 202 (375)
.+.+ ++++. +++||
T Consensus 448 -----Vaer--GIDId-V~~VI 461 (666)
T 3o8b_A 448 -----ALMT--GYTGD-FDSVI 461 (666)
T ss_dssp -----THHH--HCCCC-BSEEE
T ss_pred -----hHHc--cCCCC-CcEEE
Confidence 2222 36664 77776
No 449
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=50.75 E-value=6.5 Score=34.51 Aligned_cols=32 Identities=13% Similarity=0.065 Sum_probs=22.6
Q ss_pred CCCccEEEEecchhhhhHhHHhHHHHHHHhhh
Q 017196 195 LEHLCYLVVDETDRLLREAYQAWLPTVLQLTR 226 (375)
Q Consensus 195 ~~~~~~vIiDE~h~l~~~~~~~~l~~i~~~l~ 226 (375)
..+.+++++||-=.-++......+..++..+.
T Consensus 175 ~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~ 206 (263)
T 2olj_A 175 AMEPKIMLFDEPTSALDPEMVGEVLSVMKQLA 206 (263)
T ss_dssp TTCCSEEEEESTTTTSCHHHHHHHHHHHHHHH
T ss_pred HCCCCEEEEeCCcccCCHHHHHHHHHHHHHHH
Confidence 45678999999988888766555555555543
No 450
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=50.74 E-value=9.2 Score=32.12 Aligned_cols=18 Identities=28% Similarity=0.313 Sum_probs=14.3
Q ss_pred CEEEECCCCCchHHHhHH
Q 017196 71 DLCINSPTGSGKTLSYAL 88 (375)
Q Consensus 71 ~~ii~a~TGsGKTl~~~l 88 (375)
.+++.+|.||||+..+..
T Consensus 2 ~Iil~GpPGsGKgTqa~~ 19 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKR 19 (206)
T ss_dssp EEEEECSTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 478889999999976533
No 451
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=50.67 E-value=20 Score=29.14 Aligned_cols=15 Identities=33% Similarity=0.352 Sum_probs=12.7
Q ss_pred CEEEECCCCCchHHH
Q 017196 71 DLCINSPTGSGKTLS 85 (375)
Q Consensus 71 ~~ii~a~TGsGKTl~ 85 (375)
-+++.++.|+|||..
T Consensus 8 ~i~i~G~sGsGKTTl 22 (174)
T 1np6_A 8 LLAFAAWSGTGKTTL 22 (174)
T ss_dssp EEEEECCTTSCHHHH
T ss_pred EEEEEeCCCCCHHHH
Confidence 478889999999963
No 452
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=50.62 E-value=6.1 Score=34.96 Aligned_cols=32 Identities=16% Similarity=0.034 Sum_probs=22.3
Q ss_pred CCCccEEEEecchhhhhHhHHhHHHHHHHhhh
Q 017196 195 LEHLCYLVVDETDRLLREAYQAWLPTVLQLTR 226 (375)
Q Consensus 195 ~~~~~~vIiDE~h~l~~~~~~~~l~~i~~~l~ 226 (375)
..+.+++|+||-=.-++......+..++..+.
T Consensus 159 ~~~P~lLlLDEPts~LD~~~~~~i~~~l~~l~ 190 (275)
T 3gfo_A 159 VMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQ 190 (275)
T ss_dssp TTCCSEEEEECTTTTCCHHHHHHHHHHHHHHH
T ss_pred HcCCCEEEEECccccCCHHHHHHHHHHHHHHH
Confidence 46788999999987777765555555555443
No 453
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=50.28 E-value=6.5 Score=34.49 Aligned_cols=32 Identities=16% Similarity=0.060 Sum_probs=23.7
Q ss_pred CCCccEEEEecchhhhhHhHHhHHHHHHHhhh
Q 017196 195 LEHLCYLVVDETDRLLREAYQAWLPTVLQLTR 226 (375)
Q Consensus 195 ~~~~~~vIiDE~h~l~~~~~~~~l~~i~~~l~ 226 (375)
..+.+++++||--.-++......+..++..+.
T Consensus 154 ~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~ 185 (266)
T 2yz2_A 154 VHEPDILILDEPLVGLDREGKTDLLRIVEKWK 185 (266)
T ss_dssp TTCCSEEEEESTTTTCCHHHHHHHHHHHHHHH
T ss_pred HcCCCEEEEcCccccCCHHHHHHHHHHHHHHH
Confidence 46788999999998888876666665555543
No 454
>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} SCOP: c.37.1.9
Probab=50.24 E-value=5.1 Score=36.93 Aligned_cols=34 Identities=21% Similarity=0.184 Sum_probs=21.6
Q ss_pred HhhHHHHHHh----hCCCCCCCCE--EEECCCCCchHHHh
Q 017196 53 PVQVAVWQET----IGPGLFERDL--CINSPTGSGKTLSY 86 (375)
Q Consensus 53 ~~Q~~~~~~~----~~~~~~~~~~--ii~a~TGsGKTl~~ 86 (375)
.-|.+.++.+ +..+..|.|+ +..+.||||||.+.
T Consensus 71 a~Q~~vy~~~~~~lv~~~l~G~n~tifAYGqTGSGKTyTm 110 (354)
T 3gbj_A 71 AGQDIVFKCLGENILQNAFDGYNACIFAYGQTGSGKSYTM 110 (354)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCCEEEEEEECTTSSHHHHH
T ss_pred ccHHHHHHHhhHHHHHHHhCCceeEEEeeCCCCCCCceEE
Confidence 3466655433 3344478775 44489999999874
No 455
>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ...
Probab=50.09 E-value=4.6 Score=37.27 Aligned_cols=36 Identities=19% Similarity=0.317 Sum_probs=22.2
Q ss_pred ccHhhHHHHHHh----hCCCCCCCCE--EEECCCCCchHHHh
Q 017196 51 LFPVQVAVWQET----IGPGLFERDL--CINSPTGSGKTLSY 86 (375)
Q Consensus 51 ~~~~Q~~~~~~~----~~~~~~~~~~--ii~a~TGsGKTl~~ 86 (375)
+..-|.+.|+.+ +..+..|.|+ +..+.||||||.+.
T Consensus 65 ~~~~Q~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTM 106 (359)
T 1x88_A 65 ASTKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTM 106 (359)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHTTCEEEEEEEECTTSSHHHHH
T ss_pred ccCchhHHHHHHHHHhHHHHhCCCceEEEEeCCCCCCCceEE
Confidence 344566655543 2334467775 44489999999864
No 456
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=50.06 E-value=6.1 Score=34.24 Aligned_cols=31 Identities=13% Similarity=0.104 Sum_probs=22.4
Q ss_pred CCCccEEEEecchhhhhHhHHhHHHHHHHhh
Q 017196 195 LEHLCYLVVDETDRLLREAYQAWLPTVLQLT 225 (375)
Q Consensus 195 ~~~~~~vIiDE~h~l~~~~~~~~l~~i~~~l 225 (375)
..+.+++++||.=.-++......+..++..+
T Consensus 161 ~~~p~lllLDEPts~LD~~~~~~i~~~l~~~ 191 (247)
T 2ff7_A 161 VNNPKILIFDEATSALDYESEHVIMRNMHKI 191 (247)
T ss_dssp TTCCSEEEECCCCSCCCHHHHHHHHHHHHHH
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHH
Confidence 4567899999998888876655555555554
No 457
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=50.03 E-value=6.6 Score=34.59 Aligned_cols=31 Identities=16% Similarity=0.216 Sum_probs=22.9
Q ss_pred CCCccEEEEecchhhhhHhHHhHHHHHHHhh
Q 017196 195 LEHLCYLVVDETDRLLREAYQAWLPTVLQLT 225 (375)
Q Consensus 195 ~~~~~~vIiDE~h~l~~~~~~~~l~~i~~~l 225 (375)
..+.+++++||.-.-++......+..++..+
T Consensus 172 ~~~p~lllLDEPts~LD~~~~~~i~~~l~~~ 202 (271)
T 2ixe_A 172 IRKPRLLILDNATSALDAGNQLRVQRLLYES 202 (271)
T ss_dssp TTCCSEEEEESTTTTCCHHHHHHHHHHHHHC
T ss_pred hcCCCEEEEECCccCCCHHHHHHHHHHHHHH
Confidence 4677899999998888876665555555554
No 458
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=49.99 E-value=61 Score=32.50 Aligned_cols=77 Identities=19% Similarity=0.161 Sum_probs=49.8
Q ss_pred ceEEEEcccHHHHHHHHHHHHHhccc--------------------------------cCceEEEeecCCchHHHHHHHh
Q 017196 102 LRALVVLPTRDLALQVKDVFAAIAPA--------------------------------VGLSVGLAVGQSSIADEISELI 149 (375)
Q Consensus 102 ~~~lil~Pt~~L~~Q~~~~~~~~~~~--------------------------------~~~~v~~~~~~~~~~~~~~~~~ 149 (375)
.++||.+|++.-++.+...+.+.... .+..+..++|+.+..++..
T Consensus 253 ~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~r~~--- 329 (715)
T 2va8_A 253 GQVLVFRNSRKMAESTALKIANYMNFVSLDENALSEILKQLDDIEEGGSDEKELLKSLISKGVAYHHAGLSKALRDL--- 329 (715)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHHTCCSSCHHHHHHHHHHHTTTEEEECTTSCHHHHHH---
T ss_pred CCEEEEECCHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHhhhccccccHHHHHHHhcCEEEECCCCCHHHHHH---
Confidence 47999999999999998888765322 0123677788766544421
Q ss_pred hcCccccCccCCchhHHHhh-cCCCcEEEeCcHHHHHHHhhcCCCCCCCccEEEE
Q 017196 150 KRPKLEAGICYDPEDVLQEL-QSAVDILVATPGRLMDHINATRGFTLEHLCYLVV 203 (375)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~-~~~~~IiV~Tp~~l~~~l~~~~~~~~~~~~~vIi 203 (375)
..+.. .+...|+|+|.- +. .++++..+.+||-
T Consensus 330 ---------------v~~~f~~g~~~vlvaT~~-----l~--~Gidip~~~~VI~ 362 (715)
T 2va8_A 330 ---------------IEEGFRQRKIKVIVATPT-----LA--AGVNLPARTVIIG 362 (715)
T ss_dssp ---------------HHHHHHTTCSCEEEECGG-----GG--GSSCCCBSEEEEC
T ss_pred ---------------HHHHHHcCCCeEEEEChH-----Hh--cccCCCceEEEEe
Confidence 12222 245899999942 22 3577778777553
No 459
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=49.95 E-value=6.6 Score=45.94 Aligned_cols=19 Identities=37% Similarity=0.630 Sum_probs=16.7
Q ss_pred CCCCEEEECCCCCchHHHh
Q 017196 68 FERDLCINSPTGSGKTLSY 86 (375)
Q Consensus 68 ~~~~~ii~a~TGsGKTl~~ 86 (375)
.++.++++||+|||||..+
T Consensus 1266 ~~~~vLL~GPpGtGKT~la 1284 (2695)
T 4akg_A 1266 SKRGIILCGPPGSGKTMIM 1284 (2695)
T ss_dssp HTCEEEEECSTTSSHHHHH
T ss_pred CCCeEEEECCCCCCHHHHH
Confidence 5789999999999999753
No 460
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=49.86 E-value=6.4 Score=35.44 Aligned_cols=27 Identities=22% Similarity=0.436 Sum_probs=19.7
Q ss_pred CCCCCEEEECCCCCchHHHhHHHHHHHhh
Q 017196 67 LFERDLCINSPTGSGKTLSYALPIVQTLS 95 (375)
Q Consensus 67 ~~~~~~ii~a~TGsGKTl~~~l~il~~l~ 95 (375)
..|.-+.|.+|+|+|||.. +-++..+.
T Consensus 78 ~~Ge~vaivG~sGsGKSTL--l~ll~gl~ 104 (306)
T 3nh6_A 78 MPGQTLALVGPSGAGKSTI--LRLLFRFY 104 (306)
T ss_dssp CTTCEEEEESSSCHHHHHH--HHHHTTSS
T ss_pred cCCCEEEEECCCCchHHHH--HHHHHcCC
Confidence 3677899999999999973 44444443
No 461
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=49.73 E-value=7.6 Score=34.60 Aligned_cols=18 Identities=28% Similarity=0.490 Sum_probs=14.2
Q ss_pred CCCEEEECCCCCchHHHh
Q 017196 69 ERDLCINSPTGSGKTLSY 86 (375)
Q Consensus 69 ~~~~ii~a~TGsGKTl~~ 86 (375)
+.-+.|.+++|||||..+
T Consensus 31 ~~ii~I~G~sGsGKSTla 48 (290)
T 1odf_A 31 PLFIFFSGPQGSGKSFTS 48 (290)
T ss_dssp CEEEEEECCTTSSHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 345778899999999754
No 462
>2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor domain, ADP, binding, cell cycle, cell division, endosome, microtubule; HET: ADP; 2.60A {Homo sapiens}
Probab=49.73 E-value=5.5 Score=37.00 Aligned_cols=36 Identities=31% Similarity=0.358 Sum_probs=23.1
Q ss_pred ccHhhHHHHHHh---hCCCCCCCCEE--EECCCCCchHHHh
Q 017196 51 LFPVQVAVWQET---IGPGLFERDLC--INSPTGSGKTLSY 86 (375)
Q Consensus 51 ~~~~Q~~~~~~~---~~~~~~~~~~i--i~a~TGsGKTl~~ 86 (375)
+..-|.+.++.+ +..+..|.|+. ..+.||||||.+.
T Consensus 93 ~~~~Q~~Vy~~v~~lv~~~l~G~N~tifAYGqTGSGKTyTM 133 (376)
T 2rep_A 93 PGSGQDEVFEEIAMLVQSALDGYPVCIFAYGQTGSGKTFTM 133 (376)
T ss_dssp TTCCHHHHHHHHHHHHHGGGGTCCEEEEEECSTTSSHHHHH
T ss_pred CcccchhhhhhHHHHHHHhcCCCceEEEEeCCCCCCCceEe
Confidence 344566655443 34455787753 4489999999874
No 463
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=49.73 E-value=6.5 Score=40.13 Aligned_cols=16 Identities=38% Similarity=0.509 Sum_probs=14.3
Q ss_pred CEEEECCCCCchHHHh
Q 017196 71 DLCINSPTGSGKTLSY 86 (375)
Q Consensus 71 ~~ii~a~TGsGKTl~~ 86 (375)
++++.+|+|+|||..+
T Consensus 490 ~~ll~G~~GtGKT~la 505 (758)
T 1r6b_X 490 SFLFAGPTGVGKTEVT 505 (758)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCcHHHHH
Confidence 6899999999999864
No 464
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=49.70 E-value=7.6 Score=34.09 Aligned_cols=30 Identities=13% Similarity=-0.026 Sum_probs=21.8
Q ss_pred CCccEEEEecchhhhhHhHHhHHHHHHHhh
Q 017196 196 EHLCYLVVDETDRLLREAYQAWLPTVLQLT 225 (375)
Q Consensus 196 ~~~~~vIiDE~h~l~~~~~~~~l~~i~~~l 225 (375)
.+.+++++||-=.-++......+..++..+
T Consensus 181 ~~p~lLlLDEPts~LD~~~~~~l~~~l~~l 210 (267)
T 2zu0_C 181 LEPELCILDESDSGLDIDALKVVADGVNSL 210 (267)
T ss_dssp HCCSEEEEESTTTTCCHHHHHHHHHHHHTT
T ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Confidence 456799999998888876666565555554
No 465
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=49.67 E-value=8.4 Score=32.72 Aligned_cols=18 Identities=33% Similarity=0.292 Sum_probs=15.0
Q ss_pred CCCCEEEECCCCCchHHH
Q 017196 68 FERDLCINSPTGSGKTLS 85 (375)
Q Consensus 68 ~~~~~ii~a~TGsGKTl~ 85 (375)
.|.-+.|.++.|+|||..
T Consensus 19 ~g~~i~i~G~~GsGKSTl 36 (230)
T 2vp4_A 19 QPFTVLIEGNIGSGKTTY 36 (230)
T ss_dssp CCEEEEEECSTTSCHHHH
T ss_pred CceEEEEECCCCCCHHHH
Confidence 456688999999999973
No 466
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=49.67 E-value=17 Score=40.70 Aligned_cols=49 Identities=18% Similarity=0.092 Sum_probs=32.0
Q ss_pred HHHHhhC--CCCCCCCEEEECCCCCchHHHhHHHHHHHhhhcccCCceEEEEccc
Q 017196 58 VWQETIG--PGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPT 110 (375)
Q Consensus 58 ~~~~~~~--~~~~~~~~ii~a~TGsGKTl~~~l~il~~l~~~~~~~~~~lil~Pt 110 (375)
.++.++. .+..|+.++|.+++|+|||.-++-.+.+.+..+ .+++|+.-.
T Consensus 21 ~LD~lL~~GGi~~G~i~lI~G~pGsGKT~LAlqla~~~~~~G----~~vlYI~te 71 (1706)
T 3cmw_A 21 SLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREG----KTCAFIDAE 71 (1706)
T ss_dssp HHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHHTT----CCEEEECTT
T ss_pred HHHHHhhcCCcCCCeEEEEECCCCCCHHHHHHHHHHHHhhCC----CceEEEEec
Confidence 3444553 455788999999999999986544444444332 357777654
No 467
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=49.49 E-value=12 Score=33.73 Aligned_cols=15 Identities=27% Similarity=0.213 Sum_probs=12.6
Q ss_pred CEEEECCCCCchHHH
Q 017196 71 DLCINSPTGSGKTLS 85 (375)
Q Consensus 71 ~~ii~a~TGsGKTl~ 85 (375)
-++|.++.|+|||..
T Consensus 6 v~~i~G~~GaGKTTl 20 (318)
T 1nij_A 6 VTLLTGFLGAGKTTL 20 (318)
T ss_dssp EEEEEESSSSSCHHH
T ss_pred EEEEEecCCCCHHHH
Confidence 368889999999974
No 468
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=49.35 E-value=6.7 Score=33.38 Aligned_cols=31 Identities=16% Similarity=0.093 Sum_probs=21.4
Q ss_pred CCCccEEEEecchhhhhHhHHhHHHHHHHhh
Q 017196 195 LEHLCYLVVDETDRLLREAYQAWLPTVLQLT 225 (375)
Q Consensus 195 ~~~~~~vIiDE~h~l~~~~~~~~l~~i~~~l 225 (375)
..+.+++++||--.-++......+..++..+
T Consensus 156 ~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l 186 (224)
T 2pcj_A 156 ANEPILLFADEPTGNLDSANTKRVMDIFLKI 186 (224)
T ss_dssp TTCCSEEEEESTTTTCCHHHHHHHHHHHHHH
T ss_pred HcCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Confidence 4567899999988777776555555555444
No 469
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=49.28 E-value=7.1 Score=32.37 Aligned_cols=19 Identities=32% Similarity=0.104 Sum_probs=14.9
Q ss_pred CCCCEEEECCCCCchHHHh
Q 017196 68 FERDLCINSPTGSGKTLSY 86 (375)
Q Consensus 68 ~~~~~ii~a~TGsGKTl~~ 86 (375)
.+.-+.|.++.|||||..+
T Consensus 21 ~~~~i~i~G~~GsGKstl~ 39 (201)
T 1rz3_A 21 GRLVLGIDGLSRSGKTTLA 39 (201)
T ss_dssp SSEEEEEEECTTSSHHHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 3455788899999999753
No 470
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=49.24 E-value=20 Score=29.93 Aligned_cols=43 Identities=12% Similarity=0.036 Sum_probs=32.3
Q ss_pred CCCeEEEEcCChhhHHHHHHHHHHhcCCcceEEeccccccccc
Q 017196 331 GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSV 373 (375)
Q Consensus 331 ~~~k~lIF~~s~~~a~~l~~~L~~~g~~~~~~~~lh~~~~~~~ 373 (375)
.+.++||.+++++-|.++++.++..+..++.+..++|+.+..+
T Consensus 93 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (228)
T 3iuy_A 93 NGPGMLVLTPTRELALHVEAECSKYSYKGLKSICIYGGRNRNG 135 (228)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHCCTTCCEEEECC------
T ss_pred CCCcEEEEeCCHHHHHHHHHHHHHhcccCceEEEEECCCChHH
Confidence 4568999999999999999999987666788999998876543
No 471
>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A*
Probab=49.21 E-value=4.4 Score=37.58 Aligned_cols=36 Identities=25% Similarity=0.258 Sum_probs=22.5
Q ss_pred ccHhhHHHHHHh----hCCCCCCCCEE--EECCCCCchHHHh
Q 017196 51 LFPVQVAVWQET----IGPGLFERDLC--INSPTGSGKTLSY 86 (375)
Q Consensus 51 ~~~~Q~~~~~~~----~~~~~~~~~~i--i~a~TGsGKTl~~ 86 (375)
+..-|.+.|+.+ +..+..|.|+. ..+.||||||.+.
T Consensus 78 ~~~~Q~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTM 119 (372)
T 3b6u_A 78 WNAKQFELYDETFRPLVDSVLQGFNGTIFAYGQTGTGKTYTM 119 (372)
T ss_dssp TTCCHHHHHHHTHHHHHHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred CcCchHHHHHHHHHHHHHHHhCCCeeeEEeecCCCCCCCEeE
Confidence 344566665543 23344677754 4479999999874
No 472
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=48.99 E-value=30 Score=36.42 Aligned_cols=80 Identities=16% Similarity=0.188 Sum_probs=56.2
Q ss_pred CCceEEEEcccHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcC---CCcEE
Q 017196 100 RCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQS---AVDIL 176 (375)
Q Consensus 100 ~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~Ii 176 (375)
.+.++||.++++.-++.+...+... .|+++..++|+.+...... ..+.... .++|+
T Consensus 502 ~~~k~iVF~~~~~~~~~l~~~L~~~---~g~~~~~lhG~~~~~~R~~------------------~l~~F~~g~~~~~vL 560 (968)
T 3dmq_A 502 RSQKVLVICAKAATALQLEQVLRER---EGIRAAVFHEGMSIIERDR------------------AAAWFAEEDTGAQVL 560 (968)
T ss_dssp SSSCCCEECSSTHHHHHHHHHHHTT---TCCCEEEECTTSCTTHHHH------------------HHHHHHSTTSSCEEE
T ss_pred CCCCEEEEeCcHHHHHHHHHHHHHH---cCCcEEEEeCCCCHHHHHH------------------HHHHHhCCCCcccEE
Confidence 4457999999999888888877742 2788999999866544321 2223333 38999
Q ss_pred EeCcHHHHHHHhhcCCCCCCCccEEEEecch
Q 017196 177 VATPGRLMDHINATRGFTLEHLCYLVVDETD 207 (375)
Q Consensus 177 V~Tp~~l~~~l~~~~~~~~~~~~~vIiDE~h 207 (375)
|+|.- + ..++++..++.||+-+..
T Consensus 561 vaT~v-----~--~~GlDl~~~~~VI~~d~p 584 (968)
T 3dmq_A 561 LCSEI-----G--SEGRNFQFASHMVMFDLP 584 (968)
T ss_dssp ECSCC-----T--TCSSCCTTCCEEECSSCC
T ss_pred Eecch-----h--hcCCCcccCcEEEEecCC
Confidence 99932 1 246888899999987776
No 473
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=48.95 E-value=7.6 Score=33.84 Aligned_cols=31 Identities=10% Similarity=-0.056 Sum_probs=22.4
Q ss_pred CCccEEEEecchhhhhHhHHhHHHHHHHhhh
Q 017196 196 EHLCYLVVDETDRLLREAYQAWLPTVLQLTR 226 (375)
Q Consensus 196 ~~~~~vIiDE~h~l~~~~~~~~l~~i~~~l~ 226 (375)
.+.+++++||-=.-++......+..++..+.
T Consensus 170 ~~p~lllLDEPts~LD~~~~~~l~~~l~~l~ 200 (257)
T 1g6h_A 170 TNPKMIVMDEPIAGVAPGLAHDIFNHVLELK 200 (257)
T ss_dssp TCCSEEEEESTTTTCCHHHHHHHHHHHHHHH
T ss_pred cCCCEEEEeCCccCCCHHHHHHHHHHHHHHH
Confidence 5678999999988888766655555555543
No 474
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=48.93 E-value=43 Score=34.23 Aligned_cols=110 Identities=16% Similarity=0.152 Sum_probs=50.3
Q ss_pred CCCchHHHhHHHHHHHhhhcccCCceEEEEcccHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHHhhcCccccC
Q 017196 78 TGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAG 157 (375)
Q Consensus 78 TGsGKTl~~~l~il~~l~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (375)
..++|... +.-++...... ..+.++||.++++..++.+.+.++......++++..+.|..........
T Consensus 610 ~~~~K~~~-L~~lL~~~~~~-~~~~kvLIF~~~~~~~~~L~~~L~~~~~~~~~~~~~l~G~~~~~~hg~~---------- 677 (797)
T 4a2q_A 610 NENPKLEE-LVCILDDAYRY-NPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGM---------- 677 (797)
T ss_dssp CCCHHHHH-HHHHHHHHHHH-CSSCCEEEEESSHHHHHHHHHHHHTCSTTCSCCCEEC----------------------
T ss_pred CCChHHHH-HHHHHHHHhcc-CCCCeEEEEECcHHHHHHHHHHHHhCcccccccceEEEecCCcccCCCC----------
Confidence 34777654 33333332211 2345899999999999999999987533334444444443211100000
Q ss_pred ccCCchhHHHhhc--CCCcEEEeCcHHHHHHHhhcCCCCCCCccEEEEecc
Q 017196 158 ICYDPEDVLQELQ--SAVDILVATPGRLMDHINATRGFTLEHLCYLVVDET 206 (375)
Q Consensus 158 ~~~~~~~~~~~~~--~~~~IiV~Tp~~l~~~l~~~~~~~~~~~~~vIiDE~ 206 (375)
......+..+... +..+|+|+|-- +. .++++..+++||.=+.
T Consensus 678 ~~~eR~~~l~~F~~~g~~~vLVaT~~-----~~--~GIDlp~v~~VI~yd~ 721 (797)
T 4a2q_A 678 TLPSQKGVLDAFKTSKDNRLLIATSV-----AD--EGIDIVQCNLVVLYEY 721 (797)
T ss_dssp ----------------CCSEEEEECC--------------CCCSEEEEESC
T ss_pred CHHHHHHHHHHhhccCCceEEEEcCc-----hh--cCCCchhCCEEEEeCC
Confidence 0000112222333 34799999942 11 4588889998886444
No 475
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=48.75 E-value=1.1e+02 Score=29.47 Aligned_cols=36 Identities=14% Similarity=0.199 Sum_probs=21.7
Q ss_pred CCEEEECCCCCchHHHhHHHHHHHhhhcccCCceEEEEcc
Q 017196 70 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLP 109 (375)
Q Consensus 70 ~~~ii~a~TGsGKTl~~~l~il~~l~~~~~~~~~~lil~P 109 (375)
..+++++++|+|||..+.- +...+... +.+++++..
T Consensus 102 ~vI~ivG~~GvGKTTl~~k-LA~~l~~~---G~kVllVd~ 137 (504)
T 2j37_W 102 NVIMFVGLQGSGKTTTCSK-LAYYYQRK---GWKTCLICA 137 (504)
T ss_dssp EEEEEECSTTSSHHHHHHH-HHHHHHHT---TCCEEEEEE
T ss_pred eEEEEECCCCCCHHHHHHH-HHHHHHhC---CCeEEEEec
Confidence 3588889999999986432 22333322 234666654
No 476
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=48.74 E-value=18 Score=30.43 Aligned_cols=42 Identities=10% Similarity=0.173 Sum_probs=34.3
Q ss_pred CCCeEEEEcCChhhHHHHHHHHHHhcC--CcceEEecccccccc
Q 017196 331 GEEKCIVFTSSVESTHRLCTLLNHFGE--LRIKIKEYSGLQRQS 372 (375)
Q Consensus 331 ~~~k~lIF~~s~~~a~~l~~~L~~~g~--~~~~~~~lh~~~~~~ 372 (375)
.+.++||.|++++-+.++++.++..+. .++.+..++|+.+..
T Consensus 91 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~ 134 (230)
T 2oxc_A 91 LSTQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLS 134 (230)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHH
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHH
Confidence 345899999999999999999987652 268899999987654
No 477
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=48.51 E-value=17 Score=33.57 Aligned_cols=43 Identities=12% Similarity=0.166 Sum_probs=37.0
Q ss_pred CCCeEEEEcCChhhHHHHHHHHHHhcCCcceEEeccccccccc
Q 017196 331 GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSV 373 (375)
Q Consensus 331 ~~~k~lIF~~s~~~a~~l~~~L~~~g~~~~~~~~lh~~~~~~~ 373 (375)
.+.++||.+++++-|.++++.++..+..++.+..+||+.+..+
T Consensus 63 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~v~~~~g~~~~~~ 105 (414)
T 3oiy_A 63 KGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEE 105 (414)
T ss_dssp TTCCEEEEESSHHHHHHHHHHHHHHCCSSCCEEECCTTSCHHH
T ss_pred CCCEEEEEECCHHHHHHHHHHHHHHccCCceEEEEECCCChhh
Confidence 5668999999999999999999986545789999999998643
No 478
>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster}
Probab=48.49 E-value=4.9 Score=37.31 Aligned_cols=35 Identities=26% Similarity=0.201 Sum_probs=21.8
Q ss_pred cHhhHHHHHHh----hCCCCCCCCE--EEECCCCCchHHHh
Q 017196 52 FPVQVAVWQET----IGPGLFERDL--CINSPTGSGKTLSY 86 (375)
Q Consensus 52 ~~~Q~~~~~~~----~~~~~~~~~~--ii~a~TGsGKTl~~ 86 (375)
..-|.+.|+.+ +..+..|.|+ +..+.||||||.+.
T Consensus 78 ~~~Q~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTm 118 (373)
T 2wbe_C 78 ESKQCDVYSVVVSPLIEEVLNGYNCTVFAYGQTGTGKTHTM 118 (373)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHTCCEEEEEECSTTSSHHHHH
T ss_pred ccchhHHHHHHHHHHHHHHhCCceEEEEeecCCCCCcceec
Confidence 34566665543 2333467774 44489999999863
No 479
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=48.44 E-value=24 Score=32.01 Aligned_cols=29 Identities=14% Similarity=0.121 Sum_probs=21.1
Q ss_pred HHHHHhhCCCCCCCCEEEECCCCCchHHH
Q 017196 57 AVWQETIGPGLFERDLCINSPTGSGKTLS 85 (375)
Q Consensus 57 ~~~~~~~~~~~~~~~~ii~a~TGsGKTl~ 85 (375)
.++..+-.....+.-+.+.+++|+|||..
T Consensus 43 ~~l~~i~~~~~~g~~v~i~G~~GaGKSTL 71 (337)
T 2qm8_A 43 DLIDAVLPQTGRAIRVGITGVPGVGKSTT 71 (337)
T ss_dssp HHHHHHGGGCCCSEEEEEECCTTSCHHHH
T ss_pred HHHHhCCcccCCCeEEEEECCCCCCHHHH
Confidence 44555544455677789999999999973
No 480
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=48.29 E-value=32 Score=35.41 Aligned_cols=34 Identities=12% Similarity=0.050 Sum_probs=27.8
Q ss_pred ceEEEEcccHHHHHHHHHHHHHhccccCceEEEeecCC
Q 017196 102 LRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQS 139 (375)
Q Consensus 102 ~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~~~~ 139 (375)
..+||.|.|++-++.+.+.+++. |++...++|..
T Consensus 442 qpvLVft~sie~se~Ls~~L~~~----gi~~~vLnak~ 475 (853)
T 2fsf_A 442 QPVLVGTISIEKSELVSNELTKA----GIKHNVLNAKF 475 (853)
T ss_dssp CCEEEEESSHHHHHHHHHHHHHT----TCCCEECCTTC
T ss_pred CCEEEEECcHHHHHHHHHHHHHC----CCCEEEecCCh
Confidence 35999999999998888888764 78888888874
No 481
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=48.05 E-value=8 Score=33.28 Aligned_cols=32 Identities=19% Similarity=0.104 Sum_probs=22.9
Q ss_pred CCCccEEEEecchhhhhHhHHhHHHHHHHhhh
Q 017196 195 LEHLCYLVVDETDRLLREAYQAWLPTVLQLTR 226 (375)
Q Consensus 195 ~~~~~~vIiDE~h~l~~~~~~~~l~~i~~~l~ 226 (375)
..+.+++++||--.-++......+..++..+.
T Consensus 155 ~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~ 186 (240)
T 1ji0_A 155 MSRPKLLMMDEPSLGLAPILVSEVFEVIQKIN 186 (240)
T ss_dssp TTCCSEEEEECTTTTCCHHHHHHHHHHHHHHH
T ss_pred HcCCCEEEEcCCcccCCHHHHHHHHHHHHHHH
Confidence 45678999999988888766655555555543
No 482
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=47.92 E-value=8 Score=39.43 Aligned_cols=26 Identities=15% Similarity=0.128 Sum_probs=19.1
Q ss_pred CCCCEEEECCCCCchHHHhHHHHHHHh
Q 017196 68 FERDLCINSPTGSGKTLSYALPIVQTL 94 (375)
Q Consensus 68 ~~~~~ii~a~TGsGKTl~~~l~il~~l 94 (375)
.+.++++.+|+|+|||..+ -.+...+
T Consensus 206 ~~~~vlL~G~~GtGKT~la-~~la~~l 231 (758)
T 1r6b_X 206 RKNNPLLVGESGVGKTAIA-EGLAWRI 231 (758)
T ss_dssp SSCEEEEECCTTSSHHHHH-HHHHHHH
T ss_pred CCCCeEEEcCCCCCHHHHH-HHHHHHH
Confidence 4567999999999999764 3344444
No 483
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=47.71 E-value=8.4 Score=33.21 Aligned_cols=16 Identities=25% Similarity=0.262 Sum_probs=13.7
Q ss_pred CEEEECCCCCchHHHh
Q 017196 71 DLCINSPTGSGKTLSY 86 (375)
Q Consensus 71 ~~ii~a~TGsGKTl~~ 86 (375)
.+.|.++.|||||..+
T Consensus 24 iI~I~G~~GSGKST~a 39 (252)
T 1uj2_A 24 LIGVSGGTASGKSSVC 39 (252)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4788899999999864
No 484
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=47.70 E-value=8.4 Score=34.05 Aligned_cols=16 Identities=25% Similarity=0.102 Sum_probs=13.7
Q ss_pred CEEEECCCCCchHHHh
Q 017196 71 DLCINSPTGSGKTLSY 86 (375)
Q Consensus 71 ~~ii~a~TGsGKTl~~ 86 (375)
-+++.++.|||||..+
T Consensus 4 ~I~l~G~~GsGKST~a 19 (301)
T 1ltq_A 4 IILTIGCPGSGKSTWA 19 (301)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4789999999999854
No 485
>4f67_A UPF0176 protein LPG2838; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium; 1.79A {Legionella pneumophila subsp}
Probab=47.69 E-value=20 Score=31.38 Aligned_cols=42 Identities=10% Similarity=0.151 Sum_probs=33.8
Q ss_pred HHhcCCCeEEEEcCChhhHHHHHHHHHHhcCCcc-eEEeccccccc
Q 017196 327 LQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRI-KIKEYSGLQRQ 371 (375)
Q Consensus 327 l~~~~~~k~lIF~~s~~~a~~l~~~L~~~g~~~~-~~~~lh~~~~~ 371 (375)
+......++++||.+-..|...+..|+..| + ++..+.||+..
T Consensus 176 l~~~kdk~IVvyC~~G~RS~~Aa~~L~~~G---f~nV~~L~GGi~a 218 (265)
T 4f67_A 176 LIDKKDKKIAMFCTGGIRCEKTTAYMKELG---FEHVYQLHDGILN 218 (265)
T ss_dssp TGGGTTSCEEEECSSSHHHHHHHHHHHHHT---CSSEEEETTHHHH
T ss_pred hhhCCCCeEEEEeCCChHHHHHHHHHHHcC---CCCEEEecCHHHH
Confidence 333456789999999999999999999766 6 58888888753
No 486
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=47.63 E-value=9.3 Score=33.53 Aligned_cols=29 Identities=21% Similarity=0.129 Sum_probs=19.9
Q ss_pred CccEEEEecchhhhhHhHHhHHHHHHHhh
Q 017196 197 HLCYLVVDETDRLLREAYQAWLPTVLQLT 225 (375)
Q Consensus 197 ~~~~vIiDE~h~l~~~~~~~~l~~i~~~l 225 (375)
+.+++++||-=.-++......+..++..+
T Consensus 165 ~p~lLllDEPts~LD~~~~~~i~~~l~~l 193 (266)
T 4g1u_C 165 TPRWLFLDEPTSALDLYHQQHTLRLLRQL 193 (266)
T ss_dssp CCEEEEECCCCSSCCHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCccccCCHHHHHHHHHHHHHH
Confidence 67899999987777765555555555444
No 487
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=47.38 E-value=32 Score=32.14 Aligned_cols=36 Identities=17% Similarity=-0.033 Sum_probs=27.6
Q ss_pred CccHhhHHHHHHhhCCCCCCCCEEEECCCCCchHHHh
Q 017196 50 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSY 86 (375)
Q Consensus 50 ~~~~~Q~~~~~~~~~~~~~~~~~ii~a~TGsGKTl~~ 86 (375)
.|...=.++++.++ .+-.|+.+.|.++.|+|||...
T Consensus 157 e~~~tGiraID~l~-PigrGQR~lIfg~~g~GKT~Ll 192 (427)
T 3l0o_A 157 DPKIYSTRLIDLFA-PIGKGQRGMIVAPPKAGKTTIL 192 (427)
T ss_dssp STTCHHHHHHHHHS-CCBTTCEEEEEECTTCCHHHHH
T ss_pred cchhccchhhhhcc-cccCCceEEEecCCCCChhHHH
Confidence 44555667787766 4557899999999999999753
No 488
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=47.26 E-value=6.9 Score=40.59 Aligned_cols=16 Identities=38% Similarity=0.424 Sum_probs=14.2
Q ss_pred CEEEECCCCCchHHHh
Q 017196 71 DLCINSPTGSGKTLSY 86 (375)
Q Consensus 71 ~~ii~a~TGsGKTl~~ 86 (375)
.+++.+|+|+|||..+
T Consensus 590 ~vLl~Gp~GtGKT~lA 605 (854)
T 1qvr_A 590 SFLFLGPTGVGKTELA 605 (854)
T ss_dssp EEEEBSCSSSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 6899999999999864
No 489
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=47.26 E-value=12 Score=35.11 Aligned_cols=19 Identities=32% Similarity=0.352 Sum_probs=14.4
Q ss_pred CCCCE--EEECCCCCchHHHh
Q 017196 68 FERDL--CINSPTGSGKTLSY 86 (375)
Q Consensus 68 ~~~~~--ii~a~TGsGKTl~~ 86 (375)
.|.|+ +..+.||||||.+.
T Consensus 136 ~G~n~tifAYGqTGSGKTyTM 156 (412)
T 3u06_A 136 DGYNICIFAYGQTGSGKTYTM 156 (412)
T ss_dssp TTCCEEEEEESSTTSSHHHHH
T ss_pred CCCceEEEEecCCCCCCeeEe
Confidence 67774 44489999999874
No 490
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=47.20 E-value=6 Score=32.19 Aligned_cols=15 Identities=40% Similarity=0.341 Sum_probs=12.6
Q ss_pred CEEEECCCCCchHHH
Q 017196 71 DLCINSPTGSGKTLS 85 (375)
Q Consensus 71 ~~ii~a~TGsGKTl~ 85 (375)
-+.|.+++|||||..
T Consensus 4 ~v~IvG~SGsGKSTL 18 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTL 18 (171)
T ss_dssp EEEEEESCHHHHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 367889999999974
No 491
>2nr8_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural genomics consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens} PDB: 3nwn_A*
Probab=46.93 E-value=5.1 Score=36.99 Aligned_cols=34 Identities=24% Similarity=0.262 Sum_probs=21.6
Q ss_pred HhhHHHHHHh----hCCCCCCCCEE--EECCCCCchHHHh
Q 017196 53 PVQVAVWQET----IGPGLFERDLC--INSPTGSGKTLSY 86 (375)
Q Consensus 53 ~~Q~~~~~~~----~~~~~~~~~~i--i~a~TGsGKTl~~ 86 (375)
.-|.+.++.+ +..+..|.|+. ..+.||||||.+.
T Consensus 82 ~sQ~~Vy~~~~~~lv~~~l~G~N~tIfAYGqTGSGKTyTM 121 (358)
T 2nr8_A 82 ASQDLVYETVAKDVVSQALDGYNGTIMCYGQTGAGKTYTM 121 (358)
T ss_dssp CCHHHHHHHHTHHHHHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHhCCCceEEEEECCCCCCCceEe
Confidence 3466665544 23344677753 3479999999874
No 492
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=46.90 E-value=8.7 Score=33.33 Aligned_cols=27 Identities=30% Similarity=0.272 Sum_probs=19.8
Q ss_pred EEEEecchhhhhHhHHhHHHHHHHhhh
Q 017196 200 YLVVDETDRLLREAYQAWLPTVLQLTR 226 (375)
Q Consensus 200 ~vIiDE~h~l~~~~~~~~l~~i~~~l~ 226 (375)
++++||--.-++......+..++..+.
T Consensus 154 lllLDEPts~LD~~~~~~l~~~l~~l~ 180 (249)
T 2qi9_C 154 LLLLDEPMNSLDVAQQSALDKILSALS 180 (249)
T ss_dssp EEEESSTTTTCCHHHHHHHHHHHHHHH
T ss_pred EEEEECCcccCCHHHHHHHHHHHHHHH
Confidence 999999988888766665655555543
No 493
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=46.90 E-value=6.7 Score=34.73 Aligned_cols=30 Identities=20% Similarity=0.107 Sum_probs=21.3
Q ss_pred CCccEEEEecchhhhhHhHHhHHHHHHHhh
Q 017196 196 EHLCYLVVDETDRLLREAYQAWLPTVLQLT 225 (375)
Q Consensus 196 ~~~~~vIiDE~h~l~~~~~~~~l~~i~~~l 225 (375)
.+.+++++||-=.-++......+..++..+
T Consensus 178 ~~p~lLlLDEPts~LD~~~~~~l~~~l~~l 207 (279)
T 2ihy_A 178 GQPQVLILDEPAAGLDFIARESLLSILDSL 207 (279)
T ss_dssp TCCSEEEEESTTTTCCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCccccCHHHHHHHHHHHHHH
Confidence 567899999998777776555555555444
No 494
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=46.55 E-value=8.8 Score=32.41 Aligned_cols=19 Identities=21% Similarity=0.352 Sum_probs=16.4
Q ss_pred CCCCEEEECCCCCchHHHh
Q 017196 68 FERDLCINSPTGSGKTLSY 86 (375)
Q Consensus 68 ~~~~~ii~a~TGsGKTl~~ 86 (375)
.|.-+++.++.|+|||...
T Consensus 5 ~g~~i~~eG~~gsGKsT~~ 23 (213)
T 4edh_A 5 TGLFVTLEGPEGAGKSTNR 23 (213)
T ss_dssp CCEEEEEECSTTSSHHHHH
T ss_pred CceEEEEEcCCCCCHHHHH
Confidence 5778899999999999864
No 495
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=46.37 E-value=86 Score=30.48 Aligned_cols=82 Identities=12% Similarity=0.093 Sum_probs=51.4
Q ss_pred CCceEEEEcccHHHHHHHHHHHHHhccc----cCceEEEeecCCchHHHHHHHhhcCccccCccCCchhHHHhhcCC---
Q 017196 100 RCLRALVVLPTRDLALQVKDVFAAIAPA----VGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSA--- 172 (375)
Q Consensus 100 ~~~~~lil~Pt~~L~~Q~~~~~~~~~~~----~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 172 (375)
...++||.|++++-|+.+.+.+.+.... .+-.+..++|.... .. ++..+....+
T Consensus 438 ~~~k~lVF~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~i~g~~~~--~r-----------------~~~l~~F~~~~~~ 498 (590)
T 3h1t_A 438 RFAKTIVFCVDQEHADEMRRALNNLNSDLSRKHPDYVARVTSEEGK--IG-----------------KGHLSRFQELETS 498 (590)
T ss_dssp TTSEEEEEESSHHHHHHHHHHHHHHTHHHHTTCTTSEEECSSTTHH--HH-----------------HHHHHHHHCTTCC
T ss_pred CCccEEEEECCHHHHHHHHHHHHHhhhhhhccCCCeEEEEeCCChH--HH-----------------HHHHHHHhCCCCC
Confidence 4458999999999999999999876542 12235667776532 11 1122233321
Q ss_pred -CcEEEeCcHHHHHHHhhcCCCCCCCccEEEEecch
Q 017196 173 -VDILVATPGRLMDHINATRGFTLEHLCYLVVDETD 207 (375)
Q Consensus 173 -~~IiV~Tp~~l~~~l~~~~~~~~~~~~~vIiDE~h 207 (375)
+-|+|+|. ++. .++++..+++||++..-
T Consensus 499 ~~~ilvtt~-----~l~--~GiDip~v~~Vi~~~~~ 527 (590)
T 3h1t_A 499 TPVILTTSQ-----LLT--TGVDAPTCKNVVLARVV 527 (590)
T ss_dssp CCCEEEESS-----TTT--TTCCCTTEEEEEEESCC
T ss_pred CCEEEEECC-----hhh--cCccchheeEEEEEecC
Confidence 23777762 122 45889999999987663
No 496
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=46.36 E-value=8.8 Score=33.25 Aligned_cols=30 Identities=23% Similarity=0.121 Sum_probs=22.0
Q ss_pred CCccEEEEecchhhhhHhHHhHHHHHHHhh
Q 017196 196 EHLCYLVVDETDRLLREAYQAWLPTVLQLT 225 (375)
Q Consensus 196 ~~~~~vIiDE~h~l~~~~~~~~l~~i~~~l 225 (375)
.+.+++++||--.-++......+..++..+
T Consensus 160 ~~p~lllLDEPts~LD~~~~~~l~~~l~~l 189 (250)
T 2d2e_A 160 LEPTYAVLDETDSGLDIDALKVVARGVNAM 189 (250)
T ss_dssp HCCSEEEEECGGGTTCHHHHHHHHHHHHHH
T ss_pred cCCCEEEEeCCCcCCCHHHHHHHHHHHHHH
Confidence 456799999999888886665555555554
No 497
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=46.31 E-value=13 Score=31.47 Aligned_cols=19 Identities=26% Similarity=0.398 Sum_probs=15.5
Q ss_pred CCCCEEEECCCCCchHHHh
Q 017196 68 FERDLCINSPTGSGKTLSY 86 (375)
Q Consensus 68 ~~~~~ii~a~TGsGKTl~~ 86 (375)
.+..+.|.++.|||||..+
T Consensus 15 ~~~~i~i~G~~gsGKst~~ 33 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVA 33 (236)
T ss_dssp CCCEEEEECSSCSSHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 4556889999999999854
No 498
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=46.29 E-value=9.4 Score=31.40 Aligned_cols=16 Identities=31% Similarity=0.457 Sum_probs=13.5
Q ss_pred CEEEECCCCCchHHHh
Q 017196 71 DLCINSPTGSGKTLSY 86 (375)
Q Consensus 71 ~~ii~a~TGsGKTl~~ 86 (375)
.+.|.++.|||||..+
T Consensus 4 ~i~i~G~~GsGKst~~ 19 (208)
T 3ake_A 4 IVTIDGPSASGKSSVA 19 (208)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4788999999999854
No 499
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=46.18 E-value=8.9 Score=33.34 Aligned_cols=32 Identities=19% Similarity=0.106 Sum_probs=22.9
Q ss_pred CCCccEEEEecchhhhhHhHHhHHHHHHHhhh
Q 017196 195 LEHLCYLVVDETDRLLREAYQAWLPTVLQLTR 226 (375)
Q Consensus 195 ~~~~~~vIiDE~h~l~~~~~~~~l~~i~~~l~ 226 (375)
..+.+++++||--.-++......+..++..+.
T Consensus 144 ~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~ 175 (253)
T 2nq2_C 144 ASECKLILLDEPTSALDLANQDIVLSLLIDLA 175 (253)
T ss_dssp HTTCSEEEESSSSTTSCHHHHHHHHHHHHHHH
T ss_pred HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHH
Confidence 35678999999988888766655555555543
No 500
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=45.72 E-value=8.4 Score=34.01 Aligned_cols=16 Identities=31% Similarity=0.345 Sum_probs=13.8
Q ss_pred CEEEECCCCCchHHHh
Q 017196 71 DLCINSPTGSGKTLSY 86 (375)
Q Consensus 71 ~~ii~a~TGsGKTl~~ 86 (375)
.+.|.++.|||||..+
T Consensus 77 iI~I~G~~GSGKSTva 92 (281)
T 2f6r_A 77 VLGLTGISGSGKSSVA 92 (281)
T ss_dssp EEEEEECTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5888999999999864
Done!