Query         017197
Match_columns 375
No_of_seqs    155 out of 1513
Neff          7.7 
Searched_HMMs 29240
Date          Mon Mar 25 10:31:31 2013
Command       hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017197.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017197hhsearch_pdb -cpu 12 -v 0 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 2pnq_A [pyruvate dehydrogenase 100.0 7.4E-45 2.5E-49  366.9  24.3  295   32-331    39-457 (467)
  2 2j4o_A Mitogen-activated prote 100.0 8.8E-46   3E-50  367.8  16.8  316   17-358    12-396 (401)
  3 2p8e_A PPM1B beta isoform vari 100.0 2.8E-44 9.6E-49  345.0  24.4  247   33-332    25-301 (307)
  4 2iq1_A Protein phosphatase 2C  100.0 2.8E-43 9.7E-48  332.7  28.4  245   33-332     9-265 (274)
  5 3kdj_B Protein phosphatase 2C  100.0 1.6E-43 5.5E-48  341.0  25.1  240   32-335     9-311 (316)
  6 3qn1_B Protein phosphatase 2C  100.0 2.9E-43 9.8E-48  342.3  26.2  248   31-333    13-332 (337)
  7 2i0o_A Ser/Thr phosphatase; be 100.0 1.9E-43 6.4E-48  338.8  24.4  255   33-329    24-304 (304)
  8 1a6q_A Phosphatase 2C; catalyt 100.0 2.6E-43   9E-48  347.7  25.2  247   33-332    23-295 (382)
  9 3d8k_A PP2C, protein phosphata 100.0 1.3E-43 4.5E-48  349.1  20.5  243   34-332    15-327 (377)
 10 2irm_A Mitogen-activated prote 100.0 1.2E-43   4E-48  347.7  19.5  285   21-331     4-358 (358)
 11 4da1_A Protein phosphatase 1K, 100.0 1.7E-42   6E-47  342.9  27.6  259   20-333   110-380 (389)
 12 2isn_A NYSGXRC-8828Z, phosphat 100.0 4.3E-42 1.5E-46  337.0  24.9  246   33-332    14-336 (364)
 13 2i44_A Serine-threonine phosph 100.0 2.1E-41 7.2E-46  327.1  25.2  253   33-330    23-322 (324)
 14 2pk0_A Serine/threonine protei 100.0 7.9E-37 2.7E-41  283.9  24.4  227   33-331     7-248 (250)
 15 1txo_A Putative bacterial enzy 100.0 5.4E-37 1.9E-41  282.8  20.8  220   34-329     7-236 (237)
 16 2j82_A TPPHA, protein serine-t 100.0 5.7E-36 1.9E-40  276.3  22.4  222   34-328     3-240 (240)
 17 2jfr_A Ser-Thr phosphatase MSP 100.0   7E-35 2.4E-39  268.1  20.7  219   33-328     7-233 (234)
 18 3rnr_A Stage II sporulation E  100.0 2.2E-34 7.4E-39  261.7  10.0  200   53-328     6-211 (211)
 19 3t91_A Stage II sporulation pr  99.8 1.3E-19 4.6E-24  167.0  13.2  193   40-332    18-223 (242)
 20 3pu9_A Protein serine/threonin  99.8 1.1E-17 3.8E-22  154.6  20.5  192   41-332    22-227 (242)
 21 3zt9_A Serine phosphatase; hyd  99.7 2.3E-15   8E-20  134.2  17.9  177   41-327    15-193 (193)
 22 3f79_A Probable two-component   99.6 5.2E-15 1.8E-19  137.3  15.5  191   34-329    40-253 (255)
 23 3ke6_A Protein RV1364C/MT1410;  99.1 2.5E-09 8.6E-14  105.5  20.3  189   43-331    50-259 (399)
 24 3eq2_A Probable two-component   98.4   5E-06 1.7E-10   81.2  14.3  101   38-149   183-298 (394)
 25 3out_A Glutamate racemase; str  25.1      32  0.0011   31.1   2.2   24   59-82      9-33  (268)

No 1  
>2pnq_A [pyruvate dehydrogenase [lipoamide]]-phosphatase 1; pyruvate dehydrogenase phosphatase 1, catalytic subunit, PDP1C, hydrolase; 1.81A {Rattus norvegicus} PDB: 3n3c_A 3mq3_A
Probab=100.00  E-value=7.4e-45  Score=366.88  Aligned_cols=295  Identities=30%  Similarity=0.434  Sum_probs=207.3

Q ss_pred             CceeeEEecCCcccCCceeeec--CCCcEEEEEEcCCCchHHHHHHHHHHHHHHHH------------------------
Q 017197           32 GDYSIAVVQANSCLEDQSQVFT--SPSATYVGVYDGHGGPEASRFVNKHLFPYLHR------------------------   85 (375)
Q Consensus        32 ~~~~~~~~~~r~~~eD~~~~~~--~~~~~l~gV~DG~GG~~aa~~a~~~l~~~l~~------------------------   85 (375)
                      ..|.....+.|..|||++.+..  ..++.||||||||||+.+|++++++++..|..                        
T Consensus        39 ~~~~s~~g~~R~~nED~~~v~~~~~~~~~lfgVfDGHGG~~aa~~as~~L~~~i~~~l~~~~~l~~~~~~~~~~~~~~~~  118 (467)
T 2pnq_A           39 LGFDSNRLPANAPIEDRRSATTCLQTRGMLLGVFDGHAGCACSQAVSERLFYYIAVSLLPHETLLEIENAVESGRALLPI  118 (467)
T ss_dssp             EEEEEEEECCSSSCCEEEEEEEESSSSCEEEEEEEEESSSHHHHHHHHHHHHHHHHHHCCHHHHHHHHTTTC----CCCC
T ss_pred             EEEEeeccCCCCCCCCceeeeeccCCCcEEEEEECCCCCHHHHHHHHHHHHHHHHHhhcchhhhhhhhhhhhcccccccc
Confidence            3455555566999999997763  45788999999999999999999999887642                        


Q ss_pred             -----------------------------------------hhHHHHHHHHHHHHHHHHHHHHHhCC------CCCCccc
Q 017197           86 -----------------------------------------LSAEVIKKAFHATEEEFLRLVKRVLP------VRPQIAS  118 (375)
Q Consensus        86 -----------------------------------------~~~~~l~~a~~~~~~~l~~~~~~~~~------~~~~~~~  118 (375)
                                                               ...++|+++|..+++.|.+.......      .......
T Consensus       119 l~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~aL~~af~~~d~~i~~~~~~~~~~~~~~~~~~~~~~  198 (467)
T 2pnq_A          119 LQWHKHPNDYFSKEASKLYFNGLRTYWQELIDLNTGESADIDVKEALINAFKRLDNDISLEAQVGDPNSFLNYLVLRVAF  198 (467)
T ss_dssp             EEECCCTTCCCCSTTHHHHHHHHHHHHHHHHHC------CCCHHHHHHHHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHH
T ss_pred             ccccccccccchhhhhhhhhcchhhhhhhhccccccccchhhHHHHHHHHHHHHHHHHHHhhhhcccccccccccccCCC
Confidence                                                     23456888999999988775432100      0012245


Q ss_pred             ccceEEEEEEeCCEEEEEEcCCceeEEeeeeCCCCCceeEEEEccCCCCCCCHHHHHHHHhhCCCCCceEEeecCeeeec
Q 017197          119 VGSCCLVGAISNDVLYVANLGDSRAVLGRRVSDDSKVKVAAERLSTDHNVGVEEVRKEVEALHPDDSHIVVYARGVWRIK  198 (375)
Q Consensus       119 ~GtT~~v~~i~~~~l~vanvGDSr~~l~r~~~~~~~~~~~~~~LT~dH~~~~~~e~~ri~~~~p~~~~~~~~~~g~~r~~  198 (375)
                      +|||++++++.++.||||||||||+|++|.+. +|  .+.+++||.||++.++.|++||.+.||.........  ..|+.
T Consensus       199 ~GtTa~v~li~~~~l~vAnvGDSRa~l~r~~~-~g--~~~~~~LT~DH~~~~~~E~~Ri~~~g~~~~~~~~~~--~~Rv~  273 (467)
T 2pnq_A          199 SGATACVAHVDGVDLHVANTGDSRAMLGVQEE-DG--SWSAVTLSNDHNAQNERELQRLKLEHPKNEAKSVVK--QDRLL  273 (467)
T ss_dssp             SEECEEEEEEETTEEEEEEESSCEEEEEEECT-TS--CEEEEECCCCCSTTCHHHHHHHHHTSCGGGHHHHBS--SSSBT
T ss_pred             CcceEEEEEEECCEEEEEECCCceEEEEEecC-CC--cEEEEECCCCCCCCCHHHHHHHHHcCCCcccceeEe--cCccc
Confidence            89999999999999999999999999999731 11  467999999999999999999999986421100001  12889


Q ss_pred             CccccccccCcccccCCCCCC------------CccccccCCCCCCCCCcEeeccceEEEEcCCCCeEEEEeccCCccCC
Q 017197          199 GIIQVSRSIGDVYLKKPDFYR------------DPVFQQFGNPIPLKRPAMTAEPSILIRKLRPQDLFLIFASDGLWEQL  266 (375)
Q Consensus       199 g~l~vtRalGd~~~k~~~~~~------------~~~~~~~~~~~~~~~~~v~~~P~i~~~~l~~~D~~LvLaSDGlwd~l  266 (375)
                      |.+++||||||..+|......            ...+..+..+...++|+|+++|++..+.|.++|.|||||||||||+|
T Consensus       274 G~l~vtRAlGd~~~K~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~p~v~~~Pdv~~~~l~~~D~fLVLaSDGLwd~l  353 (467)
T 2pnq_A          274 GLLMPFRAFGDVKFKWSIDLQKRVIESGPDQLNDNEYTKFIPPNYHTPPYLTAEPEVTYHRLRPQDKFLVLATDGLWETM  353 (467)
T ss_dssp             TTBSSSBCEECGGGTSCHHHHHHHHSSSCC-----------CTTCSSSCCCBCCCEEEEEECCTTEEEEEEECHHHHTTS
T ss_pred             cccccchhcCchhhcccchhhhhhhcccccccccccccccccccccCCCcccccceEEEEEcCCCCeEEEEEecCccccC
Confidence            999999999999887531000            00011222334456789999999999999999999999999999999


Q ss_pred             CHHHHHHHHHcC-------Cc------------------------------chHHHHHHHHHHHHH--HHhhhhhhHHHH
Q 017197          267 TDEAAVEIVCKN-------PR------------------------------AGIAKRLVRAALQEA--ARKREVGYKEIK  307 (375)
Q Consensus       267 ~~~ei~~iv~~~-------~~------------------------------~~~a~~Lv~~A~~~~--~~~~~~~~~~~~  307 (375)
                      +++|+++++...       .+                              +++|..|+..|+..+  +..+.-..+.++
T Consensus       354 s~~eiv~iv~~~~~~~~~~~p~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~naA~~Lir~Al~~~~~Ge~~~~~~~~ll  433 (467)
T 2pnq_A          354 HRQDVVRIVGEYLTGMHHQQPIAVGGYKVTLGQMHGLLTERRAKMSSVFEDQNAATHLIRHAVGNNEFGAVDHERLSKML  433 (467)
T ss_dssp             CHHHHHHHHHHHHTTCSSCC-------------------------------CCHHHHHHHHHHC----------------
T ss_pred             ChHHHHHHHHHHHhhccccCcccccccCccHHHHHHHHHHhhhcccCCchhhHHHHHHHHHHhcCCCcCcchHHHHHhhh
Confidence            999999998753       11                              567899999999875  323334456788


Q ss_pred             hhhccCCCCCCCCeEEEEEEcCCC
Q 017197          308 KLKRGIRRHFHDDITVIVIYLDHH  331 (375)
Q Consensus       308 ~~~~~~~~~~~DNiTvIvv~l~~~  331 (375)
                      ..+.+.+|.++||||||||+|+.+
T Consensus       434 ~~~~~~~R~~~DdITViVv~~~~~  457 (467)
T 2pnq_A          434 SLPEELARMYRDDITIIVVQFNSH  457 (467)
T ss_dssp             ---------CCSCEEEEEEEECHH
T ss_pred             cCCccccccCCCCcEEEEEEeCch
Confidence            999999999999999999999753


No 2  
>2j4o_A Mitogen-activated protein kinase kinase kinase 7-interacting protein 1; TGF-beta, pseudo-phosphatase, TAK1 binding protein, protein binding; 2.25A {Homo sapiens} PDB: 2pom_A 2pop_A
Probab=100.00  E-value=8.8e-46  Score=367.77  Aligned_cols=316  Identities=23%  Similarity=0.253  Sum_probs=222.3

Q ss_pred             CCCceeeccCCCCCcCceeeEEecC-Cc--------ccCCceeeec-CCCcEEEEEEcCCCchHHHHHHHHHHHHHHHH-
Q 017197           17 GDGLMWHSDLKPHASGDYSIAVVQA-NS--------CLEDQSQVFT-SPSATYVGVYDGHGGPEASRFVNKHLFPYLHR-   85 (375)
Q Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~~~~-r~--------~~eD~~~~~~-~~~~~l~gV~DG~GG~~aa~~a~~~l~~~l~~-   85 (375)
                      +..-.|+++++.+....|+.+.++| |.        .|||+++++. ..+..||||||||||+.+|++++++++..|.+ 
T Consensus        12 ~~~~~~~~~~~~~~~~~~G~~~~~G~r~~g~~~~r~~nED~~~~~~~~~~~~lf~V~DGhGG~~aa~~as~~l~~~l~~~   91 (401)
T 2j4o_A           12 EQQPSWTDDLPLCHLSGVGSASNRSYSADGKGTESHPPEDSWLKFRSENNCFLYGVFNGYDGNRVTNFVAQRLSAELLLG   91 (401)
T ss_dssp             ----CCTTTSCBCTTEEEEEECCEEECSSSSCEECCCCCEEEEEEEETTTEEEEEEEEEESSSHHHHHHHHHHHHTTSSS
T ss_pred             ccCCCccccccccccCceeEEecccccccccccCCCCCCceEEEecCCCCeEEEEEEcCCCCHHHHHHHHHHHHHHHHHh
Confidence            3347899999999988898888887 44        4999998874 56789999999999999999999999988743 


Q ss_pred             ---------hhHHHHHHHHHHHHHHHHHHHHHhCC---------CCC---------------------CcccccceEEEE
Q 017197           86 ---------LSAEVIKKAFHATEEEFLRLVKRVLP---------VRP---------------------QIASVGSCCLVG  126 (375)
Q Consensus        86 ---------~~~~~l~~a~~~~~~~l~~~~~~~~~---------~~~---------------------~~~~~GtT~~v~  126 (375)
                               ...+.|.++|..+++.|.+...+.+.         ...                     ....+|||++++
T Consensus        92 ~~~~~~~~~~~~~~l~~af~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~GtTa~~~  171 (401)
T 2j4o_A           92 QLNAEHAEADVRRVLLQAFDVVERSFLESIDDALAEKASLQSQLPEGVPQHQLPPQYQKILERLKTLEREISGGAMAVVA  171 (401)
T ss_dssp             SCCTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCTTCCSSCSCGGGHHHHHHHHHHHHHHCCEEEEEEE
T ss_pred             hhhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccccccccccccccchhhhhhhcccccCCCccCEEEE
Confidence                     45678889999999888775321100         000                     123589999999


Q ss_pred             EEeCCEEEEEEcCCceeEEeeeeCCCCCceeEEEEccCCCCCCCHHHHHHHHhhCCCCCceEEeecCeeeecCccccccc
Q 017197          127 AISNDVLYVANLGDSRAVLGRRVSDDSKVKVAAERLSTDHNVGVEEVRKEVEALHPDDSHIVVYARGVWRIKGIIQVSRS  206 (375)
Q Consensus       127 ~i~~~~l~vanvGDSr~~l~r~~~~~~~~~~~~~~LT~dH~~~~~~e~~ri~~~~p~~~~~~~~~~g~~r~~g~l~vtRa  206 (375)
                      +|.+++||||||||||+|++|++.++    +++++||.||++.++.|+.||...++.    +. .....|+.|.+++|||
T Consensus       172 li~~~~l~vanvGDSRa~l~r~~~~g----~~~~~LT~DH~~~~~~E~~Ri~~~Gg~----v~-~~~~~r~~g~l~vtRa  242 (401)
T 2j4o_A          172 VLLNNKLYVANVGTNRALLCKSTVDG----LQVTQLNVDHTTENEDELFRLSQLGLD----AG-KIKQVGIICGQESTRR  242 (401)
T ss_dssp             EEETTEEEEEEESSCEEEEEEECSSS----EEEEECSCCCSTTSHHHHHHHHTTTCC----HH-HHHHHCCBTTBCCSBC
T ss_pred             EEECCEEEEEEccCceEEEEEcCCCC----ceEEECCCCCCCCCHHHHHHHHHcCCC----ee-eccCccccCCcccccc
Confidence            99999999999999999999987322    479999999999999999999988542    11 0011377788899999


Q ss_pred             cCcccccCCCCCCCccccccCCCCCCCCCcEeeccceEE-EEcCCCCeEEEEeccCCccCC--------CHHHHHHHHHc
Q 017197          207 IGDVYLKKPDFYRDPVFQQFGNPIPLKRPAMTAEPSILI-RKLRPQDLFLIFASDGLWEQL--------TDEAAVEIVCK  277 (375)
Q Consensus       207 lGd~~~k~~~~~~~~~~~~~~~~~~~~~~~v~~~P~i~~-~~l~~~D~~LvLaSDGlwd~l--------~~~ei~~iv~~  277 (375)
                      ||+..+|........       ..+.+.+.|+++|++.. +.|.++|.|||||||||||+|        ++++|++++..
T Consensus       243 lGd~~~k~~~~~~~~-------~~~~~~~~v~~~Pdv~~~~~l~~~d~flvLaSDGlwd~l~~~~~~~~s~~ei~~~v~~  315 (401)
T 2j4o_A          243 IGDYKVKYGYTDIDL-------LSAAKSKPIIAEPEIHGAQPLDGVTGFLVLMSEGLYKALEAAHGPGQANQEIAAMIDT  315 (401)
T ss_dssp             EECHHHHHSGGGSTT-------TTTCSSCSSBCCCEEEEEEECTTCCEEEEEECHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             cCCHhhccccccccc-------ccccCCCCeeccceEEEeEEeCCCCcEEEEEccchhhcccccccCCCCHHHHHHHHHH
Confidence            999887643210000       11345678999999996 999999999999999999999        89999999986


Q ss_pred             -----CCcchHHHHHHHHHHHHHHHhhhhhhHHHHhhhccC----CCCCCCCeEEEEEEcCCCCCCCCCCCCCCCC-ccc
Q 017197          278 -----NPRAGIAKRLVRAALQEAARKREVGYKEIKKLKRGI----RRHFHDDITVIVIYLDHHQKGSSNSRSKHNA-IGC  347 (375)
Q Consensus       278 -----~~~~~~a~~Lv~~A~~~~~~~~~~~~~~~~~~~~~~----~~~~~DNiTvIvv~l~~~~~~~~~~~~~~~~-~~~  347 (375)
                           .+.+.+|+.|++.|+..+....    .      .+.    ..++.||||||||+|..+......+..++.. .++
T Consensus       316 ~l~~~~~~~~~a~~Lv~~A~~~~~~a~----~------~G~~~~~~~~~~DNiTvivv~~~~~~~~~~~~~~~~~~~~~~  385 (401)
T 2j4o_A          316 EFAKQTSLDAVAQAVVDRVKRIHSDTF----A------SGGERARFCPRHEDMTLLVRNFGYPLGEMSQPTPSPAPAAGG  385 (401)
T ss_dssp             HHHHCSSHHHHHHHHHHHHHHHHHHHH----H------SCSSGGGGCSEECCEEEEEEEEBCCCC---------------
T ss_pred             HHhcCCCHHHHHHHHHHHHHHhhhhhh----h------cCCcccccCCCCCCeEEEEEEcCCCCccccccCCCCCcccCc
Confidence                 4677899999999987542110    0      000    0123899999999999876553333333333 466


Q ss_pred             cccCccccccC
Q 017197          348 TSAPVDIFSLN  358 (375)
Q Consensus       348 ~~~~~~~~~~~  358 (375)
                      ...|+.+|+..
T Consensus       386 ~~~~~~~~~~~  396 (401)
T 2j4o_A          386 RVYPVSVPYSS  396 (401)
T ss_dssp             -----------
T ss_pred             cccccccccCC
Confidence            67888888643


No 3  
>2p8e_A PPM1B beta isoform variant 6; structural genomics, hydrolase, PSI-2, protein structure initiative; 1.82A {Homo sapiens}
Probab=100.00  E-value=2.8e-44  Score=345.01  Aligned_cols=247  Identities=23%  Similarity=0.379  Sum_probs=199.0

Q ss_pred             ceeeEEecC-CcccCCceeeecC-----CCcEEEEEEcCCCchHHHHHHHHHHHHHHHH-------------------hh
Q 017197           33 DYSIAVVQA-NSCLEDQSQVFTS-----PSATYVGVYDGHGGPEASRFVNKHLFPYLHR-------------------LS   87 (375)
Q Consensus        33 ~~~~~~~~~-r~~~eD~~~~~~~-----~~~~l~gV~DG~GG~~aa~~a~~~l~~~l~~-------------------~~   87 (375)
                      .|+.++.+| |+.|||++.+...     .+..||+|||||||+.+|+++++.+.+.|.+                   ..
T Consensus        25 ~~~~~s~~G~R~~nED~~~~~~~~~~~~~~~~l~~V~DGhGG~~~a~~as~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  104 (307)
T 2p8e_A           25 RYGLSSMQGWRVEMEDAHTAVVGIPHGLEDWSFFAVYDGHAGSRVANYCSTHLLEHITTNEDFRAAGKSGSALELSVENV  104 (307)
T ss_dssp             EEEEEEEEETSSSCCEEEEEEEEETTTEEEEEEEEEEEEESCSHHHHHHHHHHHHHHHTSTTTC-----------CHHHH
T ss_pred             eEEEEecCCCCCcccceEEEEecCCCCCCCeEEEEEECCCCCHHHHHHHHHHHHHHHHhhHhhhhcccccccccccHHHH
Confidence            466666666 8999999987632     2568999999999999999999999999864                   12


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCCCCCcccccceEEEEEEeCCEEEEEEcCCceeEEeeeeCCCCCceeEEEEccCCCC
Q 017197           88 AEVIKKAFHATEEEFLRLVKRVLPVRPQIASVGSCCLVGAISNDVLYVANLGDSRAVLGRRVSDDSKVKVAAERLSTDHN  167 (375)
Q Consensus        88 ~~~l~~a~~~~~~~l~~~~~~~~~~~~~~~~~GtT~~v~~i~~~~l~vanvGDSr~~l~r~~~~~~~~~~~~~~LT~dH~  167 (375)
                      .+.|.++|..+++.|.+..    ........+|||++++++.++++|++||||||+|++|++        ++.+||+||+
T Consensus       105 ~~~l~~a~~~~~~~i~~~~----~~~~~~~~~GtT~~~~~i~~~~l~vanvGDSRa~l~r~g--------~~~~lT~DH~  172 (307)
T 2p8e_A          105 KNGIRTGFLKIDEYMRNFS----DLRNGMDRSGSTAVGVMISPKHIYFINCGDSRAVLYRNG--------QVCFSTQDHK  172 (307)
T ss_dssp             HHHHHHHHHHHHHHHHTST----TTC---CCCEECEEEEEECSSEEEEEEESSCEEEEEETT--------EEEEECCCCC
T ss_pred             HHHHHHHHHHHHHHHHhhh----hhccCCCCCCCeEEEEEEECCcEEEEEccCcEEEEEECC--------ccccCCCCCC
Confidence            4556677777776665422    122234568999999999999999999999999999998        8999999999


Q ss_pred             CCCHHHHHHHHhhCCCCCceEEeecCeeeecCccccccccCcccccCCCCCCCccccccCCCCCCCCCcEeeccceEEEE
Q 017197          168 VGVEEVRKEVEALHPDDSHIVVYARGVWRIKGIIQVSRSIGDVYLKKPDFYRDPVFQQFGNPIPLKRPAMTAEPSILIRK  247 (375)
Q Consensus       168 ~~~~~e~~ri~~~~p~~~~~~~~~~g~~r~~g~l~vtRalGd~~~k~~~~~~~~~~~~~~~~~~~~~~~v~~~P~i~~~~  247 (375)
                      +.++.|+.||...+    +.+..    .|++|.+.+|||||+..+|....            .+...|+|+++|++..+.
T Consensus       173 ~~~~~E~~rI~~~g----g~v~~----~rv~g~l~ltRalGd~~~k~~~~------------~~~~~~~v~~~pdv~~~~  232 (307)
T 2p8e_A          173 PCNPREKERIQNAG----GSVMI----QRVNGSLAVSRALGDYDYKCVDG------------KGPTEQLVSPEPEVYEIL  232 (307)
T ss_dssp             TTSHHHHHHHHHTT----CCEET----TEETTTBSCSBCEECGGGSCCTT------------CCGGGSSSBCCCEEEEEE
T ss_pred             CCCHHHHHHHHHcC----CEEEe----CcccCeEeccccccCHHHhcCcc------------cCCCCCeEeccCeEEEEE
Confidence            99999999998874    33321    38899999999999998876431            223457889999999999


Q ss_pred             cCCCCeEEEEeccCCccCCCHHHHHHHHHc-----CCcchHHHHHHHHHHHHHHHhhhhhhHHHHhhhccCCCCCCCCeE
Q 017197          248 LRPQDLFLIFASDGLWEQLTDEAAVEIVCK-----NPRAGIAKRLVRAALQEAARKREVGYKEIKKLKRGIRRHFHDDIT  322 (375)
Q Consensus       248 l~~~D~~LvLaSDGlwd~l~~~ei~~iv~~-----~~~~~~a~~Lv~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~DNiT  322 (375)
                      +.++|.|||||||||||+|+++++.++++.     .+++.+|.+|++.|+.                     +++.||||
T Consensus       233 l~~~d~~llL~SDGl~d~ls~~ei~~~v~~~~~~~~~~~~~a~~Lv~~A~~---------------------~g~~DNiT  291 (307)
T 2p8e_A          233 RAEEDEFIILACDGIWDVMSNEELCEYVKSRLEVSDDLENVCNWVVDTCLH---------------------KGSRDNMS  291 (307)
T ss_dssp             CCTTEEEEEEECHHHHTTSCHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHH---------------------TTCCSCEE
T ss_pred             cCCCCeEEEEECCCcccCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH---------------------cCCCCCeE
Confidence            999999999999999999999999999986     3667889999999987                     45799999


Q ss_pred             EEEEEcCCCC
Q 017197          323 VIVIYLDHHQ  332 (375)
Q Consensus       323 vIvv~l~~~~  332 (375)
                      ||||++...+
T Consensus       292 vivv~~~~~~  301 (307)
T 2p8e_A          292 IVLVCFSNEG  301 (307)
T ss_dssp             EEEEEC----
T ss_pred             EEEEECCCCC
Confidence            9999998765


No 4  
>2iq1_A Protein phosphatase 2C kappa, PPM1K; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.25A {Homo sapiens}
Probab=100.00  E-value=2.8e-43  Score=332.66  Aligned_cols=245  Identities=24%  Similarity=0.371  Sum_probs=204.7

Q ss_pred             ceeeEEecC-CcccCCceeeec-CCCcEEEEEEcCCCchHHHHHHHHHHHHHHHH------hhHHHHHHHHHHHHHHHHH
Q 017197           33 DYSIAVVQA-NSCLEDQSQVFT-SPSATYVGVYDGHGGPEASRFVNKHLFPYLHR------LSAEVIKKAFHATEEEFLR  104 (375)
Q Consensus        33 ~~~~~~~~~-r~~~eD~~~~~~-~~~~~l~gV~DG~GG~~aa~~a~~~l~~~l~~------~~~~~l~~a~~~~~~~l~~  104 (375)
                      .|+.++.+| |+.|||++.+.. .++..+|+|||||||+.+|+++++.+.+.|.+      .+.+.|.++|..+++.+.+
T Consensus         9 ~~g~~s~~G~R~~nED~~~~~~~~~~~~l~~V~DG~GG~~~a~~as~~~~~~l~~~~~~~~~~~~~l~~a~~~~~~~i~~   88 (274)
T 2iq1_A            9 NVGCASQIGKRKENEDRFDFAQLTDEVLYFAVYDGHGGPAAADFCHTHMEKCIMDLLPKEKNLETLLTLAFLEIDKAFSS   88 (274)
T ss_dssp             GCEEEEECCSSSSCCEEEEEEECSSSEEEEEEEEEESSTHHHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHH
T ss_pred             eEEEEecccCCCCccceEEEeeCCCCeEEEEEECCCCCHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHH
Confidence            466666666 899999998874 46789999999999999999999999998876      3567899999999999887


Q ss_pred             HHHHhCCCCCCcccccceEEEEEEeC-CEEEEEEcCCceeEEeeeeCCCCCceeEEEEccCCCCCCCHHHHHHHHhhCCC
Q 017197          105 LVKRVLPVRPQIASVGSCCLVGAISN-DVLYVANLGDSRAVLGRRVSDDSKVKVAAERLSTDHNVGVEEVRKEVEALHPD  183 (375)
Q Consensus       105 ~~~~~~~~~~~~~~~GtT~~v~~i~~-~~l~vanvGDSr~~l~r~~~~~~~~~~~~~~LT~dH~~~~~~e~~ri~~~~p~  183 (375)
                      .....  .......+|||++++++.+ +++|++||||||+|++|++        ++.+||+||++.++.|+.||.+.+  
T Consensus        89 ~~~~~--~~~~~~~~GtT~~~~~i~~~~~l~~anvGDSR~~l~r~g--------~~~~lT~DH~~~~~~E~~Ri~~~g--  156 (274)
T 2iq1_A           89 HARLS--ADATLLTSGTTATVALLRDGIELVVASVGDSRAILCRKG--------KPMKLTIDHTPERKDEKERIKKCG--  156 (274)
T ss_dssp             HHHC-----CCGGGCEECEEEEEEETTTEEEEEEESSCEEEEEETT--------EEEECCCCCCTTSHHHHHHHHHTT--
T ss_pred             Hhhhc--cccCCCCCCCcEEEEEEECCCEEEEEEecCceEEEEeCC--------EeeECCCCCCCcCHHHHHHHHHcC--
Confidence            65421  1123456899999999985 6999999999999999988        899999999999999999998873  


Q ss_pred             CCceEEe-ecCeeeecCccccccccCcccccCCCCCCCccccccCCCCCCCCCcEeeccceEEEEcCCC-CeEEEEeccC
Q 017197          184 DSHIVVY-ARGVWRIKGIIQVSRSIGDVYLKKPDFYRDPVFQQFGNPIPLKRPAMTAEPSILIRKLRPQ-DLFLIFASDG  261 (375)
Q Consensus       184 ~~~~~~~-~~g~~r~~g~l~vtRalGd~~~k~~~~~~~~~~~~~~~~~~~~~~~v~~~P~i~~~~l~~~-D~~LvLaSDG  261 (375)
                        |.+.. ..+.++++|.+++|||||+..+|..                    .++++|++..+++.++ |.||||||||
T Consensus       157 --G~v~~~~~~~~~~~~~~~ltralGd~~~k~~--------------------~v~~~pdi~~~~l~~g~d~~lll~SDG  214 (274)
T 2iq1_A          157 --GFVAWNSLGQPHVNGRLAMTRSIGDLDLKTS--------------------GVIAEPETKRIKLHHADDSFLVLTTDG  214 (274)
T ss_dssp             --CCEEECTTSCEEETTTBSCSBCEECGGGTTT--------------------TCBCCCEEEEEECCTTTEEEEEEECHH
T ss_pred             --CEEEcCCCCceeECCeEeeccccCChhhccC--------------------CEEeCCEEEEEEeCCCCCcEEEEEccC
Confidence              44443 3355688999999999999888643                    3779999999999986 6799999999


Q ss_pred             CccCCCHHHHHHHHHcC-CcchHHHHHHHHHHHHHHHhhhhhhHHHHhhhccCCCCCCCCeEEEEEEcCCCC
Q 017197          262 LWEQLTDEAAVEIVCKN-PRAGIAKRLVRAALQEAARKREVGYKEIKKLKRGIRRHFHDDITVIVIYLDHHQ  332 (375)
Q Consensus       262 lwd~l~~~ei~~iv~~~-~~~~~a~~Lv~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~DNiTvIvv~l~~~~  332 (375)
                      |||+|+++++.+++... +++.+|..|++.|+.                     +++.||+|||||++....
T Consensus       215 l~d~l~~~ei~~~~~~~~~~~~~a~~L~~~A~~---------------------~g~~DNiTvivv~~~~~~  265 (274)
T 2iq1_A          215 INFMVNSQEICDFVNQCHDPNEAAHAVTEQAIQ---------------------YGTEDNSTAVVVPFGAWG  265 (274)
T ss_dssp             HHTTCCHHHHHHHHHTSSSHHHHHHHHHHHHHH---------------------TTCCSCEEEEEEECTTC-
T ss_pred             cccCCCHHHHHHHHHHcCCHHHHHHHHHHHHHH---------------------cCCCCCeEEEEEEccCCC
Confidence            99999999999999875 667889999999987                     446999999999998765


No 5  
>3kdj_B Protein phosphatase 2C 56; ABA, PYL1, abscisic acid signaling pathway, cell membr hydrolase, magnesium, manganese, metal-binding, nucleus; HET: A8S; 1.88A {Arabidopsis thaliana} PDB: 3nmn_B* 3jrq_A* 3ujk_A 3nmv_B 3ujl_B*
Probab=100.00  E-value=1.6e-43  Score=341.04  Aligned_cols=240  Identities=33%  Similarity=0.476  Sum_probs=192.6

Q ss_pred             CceeeEEecC-CcccCCceeeecC-----------------CCcEEEEEEcCCCchHHHHHHHHHHHHHHHHh-------
Q 017197           32 GDYSIAVVQA-NSCLEDQSQVFTS-----------------PSATYVGVYDGHGGPEASRFVNKHLFPYLHRL-------   86 (375)
Q Consensus        32 ~~~~~~~~~~-r~~~eD~~~~~~~-----------------~~~~l~gV~DG~GG~~aa~~a~~~l~~~l~~~-------   86 (375)
                      -.|+.++++| |..|||++.+...                 .+..+|+|||||||+.+++++++.++..|.+.       
T Consensus         9 ~~~g~~s~~G~R~~nEDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~DG~GG~~~~~~as~~~~~~l~~~~~~~~~~   88 (316)
T 3kdj_B            9 PLYGFTSICGRRPEMEDAVSTIPRFLQSSSGSMLDGRFDPQSAAHFFGVYDGHGGSQVANYCRERMHLALAEEIAKEKPM   88 (316)
T ss_dssp             -CEEEEEECTTSSSCCEEEEEETTCC-----------CCGGGGCEEEEEEEEESSSHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred             CeEEEEEeEeCCCCCccceeeecccccccccccccccccCCCCeEEEEEEeCCCcHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence            4578888888 8999999987522                 35789999999999999999999999988761       


Q ss_pred             ----------hHHHHHHHHHHHHHHHHHHHHHhCCCCCCcccccceEEEEEEeCCEEEEEEcCCceeEEeeeeCCCCCce
Q 017197           87 ----------SAEVIKKAFHATEEEFLRLVKRVLPVRPQIASVGSCCLVGAISNDVLYVANLGDSRAVLGRRVSDDSKVK  156 (375)
Q Consensus        87 ----------~~~~l~~a~~~~~~~l~~~~~~~~~~~~~~~~~GtT~~v~~i~~~~l~vanvGDSr~~l~r~~~~~~~~~  156 (375)
                                ....+.++|..+++.+..         .....+|||++++++.++++|++||||||+|++|++       
T Consensus        89 ~~~~~~~~~~~~~~l~~a~~~~~~~~~~---------~~~~~~GtT~~~~~i~~~~l~vanvGDSR~yl~r~g-------  152 (316)
T 3kdj_B           89 LSDGDTWLEKWKKALFNSFLRVDSEIES---------VAPETVGSTSVVAVVFPSHIFVANCGDSRAVLCRGK-------  152 (316)
T ss_dssp             GGGTHHHHHHHHHHHHHHHHHHHHHGGG---------TSCTTCEECEEEEEECSSEEEEEEESSCEEEEEETT-------
T ss_pred             cccccchHHHHHHHHHHHHHHHHHHHhc---------ccCCCCCCcEEEEEEECCEEEEEEccCCEEEEEECC-------
Confidence                      234455555555554421         123468999999999999999999999999999998       


Q ss_pred             eEEEEccCCCCCCCHHHHHHHHhhCCCCCceEEeecCeeeecCccccccccCcccccCCCCCCCccccccCCCCCCCCCc
Q 017197          157 VAAERLSTDHNVGVEEVRKEVEALHPDDSHIVVYARGVWRIKGIIQVSRSIGDVYLKKPDFYRDPVFQQFGNPIPLKRPA  236 (375)
Q Consensus       157 ~~~~~LT~dH~~~~~~e~~ri~~~~p~~~~~~~~~~g~~r~~g~l~vtRalGd~~~k~~~~~~~~~~~~~~~~~~~~~~~  236 (375)
                       ++.+||+||++.++.|+.|+...+    +.+... ..+|+.|.+++||+||+..+|                     |.
T Consensus       153 -~~~~lT~DH~~~~~~e~~ri~~~~----g~v~~~-~~~r~~g~l~~sRalGd~~~~---------------------~~  205 (316)
T 3kdj_B          153 -TALPLSVDHKPDREDEAARIEAAG----GKVIQW-NGARVFGVLAMSRSIGDRYLK---------------------PS  205 (316)
T ss_dssp             -EEEESCCCCCTTSHHHHHHHHHTT----CCEEES-SSEEETTTBSCSBCEECGGGT---------------------TT
T ss_pred             -EecccCCCCCCCCHHHHHHHHHcC----CeEEec-CCceEcceeccccccCccccC---------------------CC
Confidence             899999999999999999999874    333332 235999999999999998774                     45


Q ss_pred             EeeccceEEEEcCCCCeEEEEeccCCccCCCHHHHHHHHHc----------------------------CCcchHHHHHH
Q 017197          237 MTAEPSILIRKLRPQDLFLIFASDGLWEQLTDEAAVEIVCK----------------------------NPRAGIAKRLV  288 (375)
Q Consensus       237 v~~~P~i~~~~l~~~D~~LvLaSDGlwd~l~~~ei~~iv~~----------------------------~~~~~~a~~Lv  288 (375)
                      ++++|++..+.+...+.|||||||||||+|+++|+.++++.                            .+.+.+|+.|+
T Consensus       206 ~~~~pdv~~~~~~~~~d~llL~SDGl~d~l~~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~Lv  285 (316)
T 3kdj_B          206 IIPDPEVTAVKRVKEDDCLILASDGVWDVMTDEEACEMARKRILLWHKKNAVAGGASLLADERRKEGKDPAAMSAAEYLS  285 (316)
T ss_dssp             SBCCCEEEEEECCTTEEEEEEECHHHHTSSCHHHHHHHHHHHHHHHTTC-----------------CCCHHHHHHHHHHH
T ss_pred             cCCCCceEEEEecCCCCEEEEEccCcccCCCHHHHHHHHHHHhhhhccccccccccccccccccccccCchHHHHHHHHH
Confidence            88999999998555555888999999999999999999975                            12356788999


Q ss_pred             HHHHHHHHHhhhhhhHHHHhhhccCCCCCCCCeEEEEEEcCCCCCCC
Q 017197          289 RAALQEAARKREVGYKEIKKLKRGIRRHFHDDITVIVIYLDHHQKGS  335 (375)
Q Consensus       289 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~DNiTvIvv~l~~~~~~~  335 (375)
                      +.|+.                     +|+.||||||||+|..+.+..
T Consensus       286 ~~A~~---------------------~g~~DNiTvivv~l~~~~~~~  311 (316)
T 3kdj_B          286 KLAIQ---------------------RGSKDNISVVVVDLKPRRKLK  311 (316)
T ss_dssp             HHHHH---------------------TTCCSCEEEEEEECSCC----
T ss_pred             HHHHH---------------------cCCCCCeEEEEEEccCCCccc
Confidence            99887                     557999999999999876443


No 6  
>3qn1_B Protein phosphatase 2C 16; start domain, BET V domain, PYR/PYL/RCAR, PP2C, abscisic ACI receptor, type 2C protein phosphatase; HET: A8S; 1.80A {Arabidopsis thaliana} PDB: 3zvu_B* 3ujg_B 3nmt_B* 4ds8_B* 3rt0_A 3kb3_B*
Probab=100.00  E-value=2.9e-43  Score=342.25  Aligned_cols=248  Identities=31%  Similarity=0.434  Sum_probs=200.7

Q ss_pred             cCceeeEEecC-CcccCCceeeecC----------------------CCcEEEEEEcCCCchHHHHHHHHHHHHHHHHh-
Q 017197           31 SGDYSIAVVQA-NSCLEDQSQVFTS----------------------PSATYVGVYDGHGGPEASRFVNKHLFPYLHRL-   86 (375)
Q Consensus        31 ~~~~~~~~~~~-r~~~eD~~~~~~~----------------------~~~~l~gV~DG~GG~~aa~~a~~~l~~~l~~~-   86 (375)
                      ...|+.++++| |..|||++.+...                      .+..||+|||||||+.+++++++.++..|.+. 
T Consensus        13 ~~~~G~~s~~G~R~~nEDa~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~l~~V~DGhGG~~~~~~as~~~~~~l~~~~   92 (337)
T 3qn1_B           13 IPLWGTVSIQGNRSEMEDAFAVSPHFLKLPIKMLMGDHEGMSPSLTHLTGHFFGVYDGHGGHKVADYCRDRLHFALAEEI   92 (337)
T ss_dssp             SCCEEEEEECTTSSSCCEEEEEEEEEEEEEGGGTC----------CEEEEEEEEEEEEESSSHHHHHHHHHHHHHHHHHH
T ss_pred             cCceEEEEeeeCCchhhhHHHHHhhhhcccchhcccccccccccccCCCeEEEEEEeCCCChhHHHHHHHHHHHHHHHHH
Confidence            34588888888 8999999987522                      15789999999999999999999999988761 


Q ss_pred             -------------------hHHHHHHHHHHHHHHHHHHHHHhC-------CCCCCcccccceEEEEEEeCCEEEEEEcCC
Q 017197           87 -------------------SAEVIKKAFHATEEEFLRLVKRVL-------PVRPQIASVGSCCLVGAISNDVLYVANLGD  140 (375)
Q Consensus        87 -------------------~~~~l~~a~~~~~~~l~~~~~~~~-------~~~~~~~~~GtT~~v~~i~~~~l~vanvGD  140 (375)
                                         +...|+++|..+++.+.....+..       ........+|||++++++.++++|++||||
T Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~GtT~~~~~i~~~~l~~anvGD  172 (337)
T 3qn1_B           93 ERIKDELCKRNTGEGRQVQWDKVFTSCFLTVDGEIEGKIGRAVVGSSDKVLEAVASETVGSTAVVALVCSSHIVVSNCGD  172 (337)
T ss_dssp             HHTC------------CHHHHHHHHHHHHHHHHHHHTSSCBCCTTCSSCBCCCSSCTTCEECEEEEEECSSEEEEEEESS
T ss_pred             HhhhhhhhccccccchHHHHHHHHHHHHHHhhHHHHhhhhccccccccccccccccCCCCceEEEEEEECCEEEEEeccC
Confidence                               234566666677666654321100       112234568999999999999999999999


Q ss_pred             ceeEEeeeeCCCCCceeEEEEccCCCCCCCHHHHHHHHhhCCCCCceEEeecCeeeecCccccccccCcccccCCCCCCC
Q 017197          141 SRAVLGRRVSDDSKVKVAAERLSTDHNVGVEEVRKEVEALHPDDSHIVVYARGVWRIKGIIQVSRSIGDVYLKKPDFYRD  220 (375)
Q Consensus       141 Sr~~l~r~~~~~~~~~~~~~~LT~dH~~~~~~e~~ri~~~~p~~~~~~~~~~g~~r~~g~l~vtRalGd~~~k~~~~~~~  220 (375)
                      ||+|++|++        .+++||+||++.++.|+.||...+    +.+.... .+|++|.+++||+||+..+|       
T Consensus       173 SR~~l~r~g--------~~~~lT~DH~~~~~~e~~ri~~~g----g~v~~~~-~~r~~g~l~~sRalGd~~~~-------  232 (337)
T 3qn1_B          173 SRAVLFRGK--------EAMPLSVDHKPDREDEYARIENAG----GKVIQWQ-GARVFGVLAMSRSIGDRYLK-------  232 (337)
T ss_dssp             CEEEEEETT--------EEEESCCCCCTTSHHHHHHHHHTT----CCEEESS-SEEETTTBSCSBCEECGGGT-------
T ss_pred             cEEEEEeCC--------EeeeecCCCCCCCHHHHHHHHHcC----CeEEecC-CceecCcccccccccccccc-------
Confidence            999999999        999999999999999999999874    4444332 36999999999999998773       


Q ss_pred             ccccccCCCCCCCCCcEeeccceEEEEcCCCCeEEEEeccCCccCCCHHHHHHHHHc---------------------C-
Q 017197          221 PVFQQFGNPIPLKRPAMTAEPSILIRKLRPQDLFLIFASDGLWEQLTDEAAVEIVCK---------------------N-  278 (375)
Q Consensus       221 ~~~~~~~~~~~~~~~~v~~~P~i~~~~l~~~D~~LvLaSDGlwd~l~~~ei~~iv~~---------------------~-  278 (375)
                                    |.++++|++..+.+.+.+.|||||||||||+|++++|.++++.                     . 
T Consensus       233 --------------~~v~~~pdv~~~~~~~~~d~llL~SDGl~d~l~~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  298 (337)
T 3qn1_B          233 --------------PYVIPEPEVTFMPRSREDECLILASDGLWDVMNNQEVCEIARRRILMWHKKNGAPPLAERGKGIDP  298 (337)
T ss_dssp             --------------TTSBCCCEEEEEECCTTEEEEEEECHHHHTTSCHHHHHHHHHHHHHHHHHHHCCC----CCSSCCH
T ss_pred             --------------CCCCCcceEEEEEeCCCCCEEEEEecCcccCCCHHHHHHHHHHHhhhhccccccccccccccccCh
Confidence                          5688999999999977777999999999999999999999975                     1 


Q ss_pred             CcchHHHHHHHHHHHHHHHhhhhhhHHHHhhhccCCCCCCCCeEEEEEEcCCCCC
Q 017197          279 PRAGIAKRLVRAALQEAARKREVGYKEIKKLKRGIRRHFHDDITVIVIYLDHHQK  333 (375)
Q Consensus       279 ~~~~~a~~Lv~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~DNiTvIvv~l~~~~~  333 (375)
                      ..+.+|..|++.|+.                     +|+.||||||||+|...++
T Consensus       299 ~~~~~a~~Lv~~A~~---------------------~g~~DNiTvivv~l~~~~~  332 (337)
T 3qn1_B          299 ACQAAADYLSMLALQ---------------------KGSKDNISIIVIDLKAQRK  332 (337)
T ss_dssp             HHHHHHHHHHHHHHH---------------------TTCCSCEEEEEEECCSCC-
T ss_pred             hHHHHHHHHHHHHHH---------------------cCCCCCEEEEEEEecCCcc
Confidence            235678999999988                     5579999999999998764


No 7  
>2i0o_A Ser/Thr phosphatase; beta sandwich, structural genomics, PSI, protei structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Anopheles gambiae}
Probab=100.00  E-value=1.9e-43  Score=338.76  Aligned_cols=255  Identities=26%  Similarity=0.383  Sum_probs=199.7

Q ss_pred             ceeeEEecC-CcccCCceeeec--CCCcEEEEEEcCCCchHHHHHHHHHHHHHHHH-------hhHHHHHHHHHHHHHHH
Q 017197           33 DYSIAVVQA-NSCLEDQSQVFT--SPSATYVGVYDGHGGPEASRFVNKHLFPYLHR-------LSAEVIKKAFHATEEEF  102 (375)
Q Consensus        33 ~~~~~~~~~-r~~~eD~~~~~~--~~~~~l~gV~DG~GG~~aa~~a~~~l~~~l~~-------~~~~~l~~a~~~~~~~l  102 (375)
                      .|..++.+| |..|||++.+..  .++..||+|||||||+.+++++++.+++.|.+       .+.+.|+++|..+++.|
T Consensus        24 ~~~~~s~~G~R~~nED~~~~~~~~~~~~~l~~V~DGhGG~~~a~~as~~~~~~l~~~~~~~~~~~~~~l~~a~~~~~~~l  103 (304)
T 2i0o_A           24 ASGSSSMQGWRISQEDAHNCILNFDDQCSFFAVYDGHGGAEVAQYCSLHLPTFLKTVEAYGRKEFEKALKEAFLGFDATL  103 (304)
T ss_dssp             EEEEEEEEESSSCCCEEEEEEEEEETTEEEEEEEECSSCSHHHHHHHHHHHHHHHHSHHHHTTCHHHHHHHHHHHHHHHT
T ss_pred             EEEEeecCCCCCCccCEEEEEeccCCCeEEEEEEcCCCCHHHHHHHHHHHHHHHHhhhhcccccHHHHHHHHHHHHHHHH
Confidence            456666666 899999997753  45789999999999999999999999999876       34677888999998877


Q ss_pred             HHHHHH-----hCC-----CCCCcccccceEEEEEEeCCEEEEEEcCCceeEEeeeeCCCCCceeEEEEccCCCCCCCHH
Q 017197          103 LRLVKR-----VLP-----VRPQIASVGSCCLVGAISNDVLYVANLGDSRAVLGRRVSDDSKVKVAAERLSTDHNVGVEE  172 (375)
Q Consensus       103 ~~~~~~-----~~~-----~~~~~~~~GtT~~v~~i~~~~l~vanvGDSr~~l~r~~~~~~~~~~~~~~LT~dH~~~~~~  172 (375)
                      .+....     ...     .......+|||++++++.++++|++||||||+|++|++        ++++||+||++.++.
T Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~GtT~~~~~i~~~~l~vanvGDSRa~l~r~g--------~~~~LT~DH~~~~~~  175 (304)
T 2i0o_A          104 LQEKVIEELKVLSGDSAGSDAEPGKDSGCTAVVALLHGKDLYVANAGDSRCVVCRNG--------KALEMSFDHKPEDTV  175 (304)
T ss_dssp             TSHHHHHHHHHHHCC-----CCTTTSCEEEEEEEEEETTEEEEEEESSCEEEEEETT--------EEEECCCCCCTTSHH
T ss_pred             HhhhhHHHHhhhccccccccccCCCCCCccEEEEEEECCEEEEEEccCcEEEEEECC--------EEEEcCCCcCCcCHH
Confidence            653210     000     01114568999999999999999999999999999998        999999999999999


Q ss_pred             HHHHHHhhCCCCCceEEeecCeeeecCccccccccCcccccCCCCCCCccccccCCCCCCCCCcEeeccceEEEEcCCCC
Q 017197          173 VRKEVEALHPDDSHIVVYARGVWRIKGIIQVSRSIGDVYLKKPDFYRDPVFQQFGNPIPLKRPAMTAEPSILIRKLRPQD  252 (375)
Q Consensus       173 e~~ri~~~~p~~~~~~~~~~g~~r~~g~l~vtRalGd~~~k~~~~~~~~~~~~~~~~~~~~~~~v~~~P~i~~~~l~~~D  252 (375)
                      |+.||...++    .+. ..  .|++|.+++|||||+..+|...            .+|.+.+.|+++|++..+++.++|
T Consensus       176 e~~rI~~~gg----~v~-~~--~rv~g~l~ltRalGd~~~k~~~------------~l~~~~~~v~~~pdi~~~~l~~~D  236 (304)
T 2i0o_A          176 EYQRIEKAGG----RVT-LD--GRVNGGLNLSRAIGDHGYKMNK------------SLPAEEQMISALPDIEKITVGPED  236 (304)
T ss_dssp             HHHHHHHTTC----CBC-TT--SCBTTSCSCSBCEECGGGCCCT------------TSCGGGSSSBCCCEEEEEECCTTE
T ss_pred             HHHHHHhCCC----EEE-eC--CeEcCceeccccccCHHHccCc------------cCCccCCeEEeeCeEEEEEcCCCC
Confidence            9999998743    221 11  3788989999999999887543            234456788999999999999999


Q ss_pred             eEEEEeccCCccCCCHHHHHHHHHc------CCcchHHHHHHHHHHHHHHHhhhhhhHHHHhhhccCCCCCCCCeEEEEE
Q 017197          253 LFLIFASDGLWEQLTDEAAVEIVCK------NPRAGIAKRLVRAALQEAARKREVGYKEIKKLKRGIRRHFHDDITVIVI  326 (375)
Q Consensus       253 ~~LvLaSDGlwd~l~~~ei~~iv~~------~~~~~~a~~Lv~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~DNiTvIvv  326 (375)
                      .|||||||||||+|+++++.++++.      .+++.+|.+|++.|+......               .+++.||||||||
T Consensus       237 ~fllL~SDGl~d~l~~~ei~~~v~~~~~~~~~~~~~~a~~L~~~a~~~~~~g---------------~~g~~DNiTvivv  301 (304)
T 2i0o_A          237 EFMVLACDGIWNFMTSEQVVQFVQERINKPGMKLSKICEELFDHCLAPHTRG---------------DGTGCDNMTAIIV  301 (304)
T ss_dssp             EEEEEECHHHHTTCCHHHHHHHHHHHHTSTTCCHHHHHHHHHHHHC---------------------------CEEEEEE
T ss_pred             eEEEEECcCccccCCHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcc---------------CCCCCCCeEEEEE
Confidence            9988999999999999999999985      456778999999988643100               0236899999999


Q ss_pred             EcC
Q 017197          327 YLD  329 (375)
Q Consensus       327 ~l~  329 (375)
                      +|+
T Consensus       302 ~~~  304 (304)
T 2i0o_A          302 QFK  304 (304)
T ss_dssp             EEC
T ss_pred             EeC
Confidence            974


No 8  
>1a6q_A Phosphatase 2C; catalytic mechanism, metalloenzyme, transductuin, hydrolase; 2.00A {Homo sapiens} SCOP: a.159.1.1 d.219.1.1 PDB: 3fxk_A 3fxj_A 3fxl_A* 3fxm_A* 3fxo_A
Probab=100.00  E-value=2.6e-43  Score=347.70  Aligned_cols=247  Identities=23%  Similarity=0.373  Sum_probs=207.1

Q ss_pred             ceeeEEecC-CcccCCceeeecC-----CCcEEEEEEcCCCchHHHHHHHHHHHHHHHH--------------hhHHHHH
Q 017197           33 DYSIAVVQA-NSCLEDQSQVFTS-----PSATYVGVYDGHGGPEASRFVNKHLFPYLHR--------------LSAEVIK   92 (375)
Q Consensus        33 ~~~~~~~~~-r~~~eD~~~~~~~-----~~~~l~gV~DG~GG~~aa~~a~~~l~~~l~~--------------~~~~~l~   92 (375)
                      .|+.++.+| |..|||++++...     .+..||+|||||||+.+|+++++.+++.|..              ...+.|.
T Consensus        23 ~~g~~s~~G~R~~nEDa~~~~~~~~~~~~~~~lf~V~DGhGG~~aa~~as~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~  102 (382)
T 1a6q_A           23 RYGLSSMQGWRVEMEDAHTAVIGLPSGLESWSFFAVYDGHAGSQVAKYCCEHLLDHITNNQDFKGSAGAPSVENVKNGIR  102 (382)
T ss_dssp             EEEEEEEEETSSSCCEEEEEEEEETTTEEEEEEEEEEEEESCSHHHHHHHHHHHHHHHTSHHHHCSSSSCCHHHHHHHHH
T ss_pred             EEEEEecCCCCCCCCceeEEecCCCCCCCCeEEEEEEcCCCcHHHHHHHHHHHHHHHHhhhhhhccCCCCCHHHHHHHHH
Confidence            466777777 8999999987632     2468999999999999999999999998863              1256788


Q ss_pred             HHHHHHHHHHHHHHHHhCCCCCCcccccceEEEEEEeCCEEEEEEcCCceeEEeeeeCCCCCceeEEEEccCCCCCCCHH
Q 017197           93 KAFHATEEEFLRLVKRVLPVRPQIASVGSCCLVGAISNDVLYVANLGDSRAVLGRRVSDDSKVKVAAERLSTDHNVGVEE  172 (375)
Q Consensus        93 ~a~~~~~~~l~~~~~~~~~~~~~~~~~GtT~~v~~i~~~~l~vanvGDSr~~l~r~~~~~~~~~~~~~~LT~dH~~~~~~  172 (375)
                      ++|..+++.|.+.....    .....+|||++++++.++++|++||||||+|++|++        ++.+||+||++.++.
T Consensus       103 ~af~~~n~~i~~~~~~~----~~~~~~GtT~~~~li~~~~l~vanvGDSRayl~r~g--------~~~~LT~DHs~~~~~  170 (382)
T 1a6q_A          103 TGFLEIDEHMRVMSEKK----HGADRSGSTAVGVLISPQHTYFINCGDSRGLLCRNR--------KVHFFTQDHKPSNPL  170 (382)
T ss_dssp             HHHHHHHHHHHHHHHHT----TCCCCCEECEEEEEECSSEEEEEEESSCEEEEEETT--------EEEEECCCCCTTSHH
T ss_pred             HHHHHHHHHHHhhhhhc----cCCCCCcceEEEEEEECCeEEEEEcCCCeEEEEECC--------ceEEeCCCCCCCCHH
Confidence            89999999888765421    223458999999999999999999999999999998        899999999999999


Q ss_pred             HHHHHHhhCCCCCceEEeecCeeeecCccccccccCcccccCCCCCCCccccccCCCCCCCCCcEeeccceEEEEcC-CC
Q 017197          173 VRKEVEALHPDDSHIVVYARGVWRIKGIIQVSRSIGDVYLKKPDFYRDPVFQQFGNPIPLKRPAMTAEPSILIRKLR-PQ  251 (375)
Q Consensus       173 e~~ri~~~~p~~~~~~~~~~g~~r~~g~l~vtRalGd~~~k~~~~~~~~~~~~~~~~~~~~~~~v~~~P~i~~~~l~-~~  251 (375)
                      |+.||...+    +.+..    .|++|.+++|||||+..+|....            .+...|+|+++|++..+.+. ++
T Consensus       171 E~~RI~~~g----g~v~~----~Rv~g~l~ltRalGd~~~K~~~~------------~~~~~~~v~~~Pdv~~~~l~~~~  230 (382)
T 1a6q_A          171 EKERIQNAG----GSVMI----QRVNGSLAVSRALGDFDYKCVHG------------KGPTEQLVSPEPEVHDIERSEED  230 (382)
T ss_dssp             HHHHHHHTT----CCEET----TEETTTBSCSBCEECGGGSCCTT------------CCGGGSSSBCCCEEEEEECCTTT
T ss_pred             HHHHHHhcC----cEEec----ccccCceeeeeecCcHhhccccc------------CCCccCeeeeeeeEEEEEccCCC
Confidence            999998874    33332    38899999999999998876431            23456789999999999999 87


Q ss_pred             CeEEEEeccCCccCCCHHHHHHHHHc-----CCcchHHHHHHHHHHHHHHHhhhhhhHHHHhhhccCCCCCCCCeEEEEE
Q 017197          252 DLFLIFASDGLWEQLTDEAAVEIVCK-----NPRAGIAKRLVRAALQEAARKREVGYKEIKKLKRGIRRHFHDDITVIVI  326 (375)
Q Consensus       252 D~~LvLaSDGlwd~l~~~ei~~iv~~-----~~~~~~a~~Lv~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~DNiTvIvv  326 (375)
                      |.|||||||||||+|+++++.++++.     .+.+.+|..|++.|+.                     +++.||||||||
T Consensus       231 dd~llLaSDGlwd~ls~~ei~~~v~~~~~~~~~~~~~a~~Lv~~A~~---------------------~g~~DNiTvivv  289 (382)
T 1a6q_A          231 DQFIILACDGIWDVMGNEELCDFVRSRLEVTDDLEKVCNEVVDTCLY---------------------KGSRDNMSVILI  289 (382)
T ss_dssp             EEEEEEECHHHHTTSCHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHH---------------------TTCCSCEEEEEE
T ss_pred             CeEEEEeccCccCCCChHHHHHHHHHHHhcCCCHHHHHHHHHHHHHh---------------------cCCcCCEEEEEE
Confidence            88999999999999999999999986     3667889999999977                     457999999999


Q ss_pred             EcCCCC
Q 017197          327 YLDHHQ  332 (375)
Q Consensus       327 ~l~~~~  332 (375)
                      +|....
T Consensus       290 ~~~~~~  295 (382)
T 1a6q_A          290 CFPNAP  295 (382)
T ss_dssp             ECTTSC
T ss_pred             EecCCC
Confidence            998655


No 9  
>3d8k_A PP2C, protein phosphatase 2C; nysgrc, PSI-II, STR genomics, protein structure initiative, NEW YORK structural research consortium, nysgxrc; 2.71A {Toxoplasma gondii}
Probab=100.00  E-value=1.3e-43  Score=349.13  Aligned_cols=243  Identities=22%  Similarity=0.308  Sum_probs=198.8

Q ss_pred             eeeEEecC-CcccCC-----ceeee----cCCCcEEEEEEcCCCchHHHHHHHHHHHHHHHH---hhHHHHHHHHHHHHH
Q 017197           34 YSIAVVQA-NSCLED-----QSQVF----TSPSATYVGVYDGHGGPEASRFVNKHLFPYLHR---LSAEVIKKAFHATEE  100 (375)
Q Consensus        34 ~~~~~~~~-r~~~eD-----~~~~~----~~~~~~l~gV~DG~GG~~aa~~a~~~l~~~l~~---~~~~~l~~a~~~~~~  100 (375)
                      |..++.+| |+.|||     ++++.    ..++..||+|||||||+.+|++++++++..|.+   .+.+.|+++|..+++
T Consensus        15 ~~~~s~~G~R~~~ED~~neD~~~~~~~~~~~~~~~lf~V~DGhGG~~aa~~as~~l~~~l~~~~~~~~~al~~af~~~d~   94 (377)
T 3d8k_A           15 CASATSRNRRPTSESPHSDDVVVVEGMLRGRPETRVHAMFDGFQGRHSAMWLAQNVMNYLNDLRDVNEEEITRQFERMDG   94 (377)
T ss_dssp             HHHTTTCEEEEEECC---CEEEEEEEECSSCTTEEEEEEEEBSSSSHHHHHHHHHHHHHHTTCSSSSHHHHHHHHHHHHH
T ss_pred             EEEEEccCCCCccccchhcceEEEecccCCCCCeEEEEEEcCCCcHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence            34444455 776655     44443    256778999999999999999999999999976   457889999999999


Q ss_pred             HHHHHHHHhCCCCCCcccccceEEEEEEe---------------------------------------------------
Q 017197          101 EFLRLVKRVLPVRPQIASVGSCCLVGAIS---------------------------------------------------  129 (375)
Q Consensus       101 ~l~~~~~~~~~~~~~~~~~GtT~~v~~i~---------------------------------------------------  129 (375)
                      .|.+..          ..+|||++++++.                                                   
T Consensus        95 ~l~~~~----------~~~GtTa~~~~i~~~~~~~~~~~~g~~~~p~~~~~~~~~~~~~g~ta~a~vali~~~~p~~~~~  164 (377)
T 3d8k_A           95 DLRAAN----------LPGGSSALIIFVRYEKKPTEARVVGRQIVPEGAKEFTSVAEALGGPLMPVVAMNFRRDPRAAKG  164 (377)
T ss_dssp             HHHHHT----------CCCCBCEEEEEEEEESSCCCEEEETTEEECCC---CCCHHHHSSCCCCCCEEECGGGCGGGTTC
T ss_pred             HHHhcc----------cCCCCceEEEEEeccccccccccccccccccccccccccccccccccccceeeecccccccccC
Confidence            988752          1479999888874                                                   


Q ss_pred             CCEEEEEEcCCceeEEeeeeCCCCCceeEEEEccCCCCCCCHHHHHHHHhhCCCCCceEEeecCeeeecCccccccccCc
Q 017197          130 NDVLYVANLGDSRAVLGRRVSDDSKVKVAAERLSTDHNVGVEEVRKEVEALHPDDSHIVVYARGVWRIKGIIQVSRSIGD  209 (375)
Q Consensus       130 ~~~l~vanvGDSr~~l~r~~~~~~~~~~~~~~LT~dH~~~~~~e~~ri~~~~p~~~~~~~~~~g~~r~~g~l~vtRalGd  209 (375)
                      ++++|+|||||||+|++|++        ++.+||+||++.++.|+.||.+.+    +.+...+|.+|++|.|++|||||+
T Consensus       165 ~~~l~vanvGDSRa~l~r~g--------~~~~LT~DH~~~~~~E~~RI~~~g----g~v~~~~g~~rv~G~l~vtRalGd  232 (377)
T 3d8k_A          165 IYTIHVASLGNSRCVLKSGR--------TAIHLSTPHTASSHKERHRVQAAG----GVFTTVNGELLLGGVVPMTRAFGS  232 (377)
T ss_dssp             EEEEEEEEESSCEEEEEETT--------EEEESSCCCSSSSHHHHHHHHTTT----CCEEECSSSEEETTTBSCSBCSSC
T ss_pred             CCeEEEEEcccceEEEEECC--------EEEECCcCCCCCCHHHHHHHHHcC----CEEEecCCcEEEcCceecceeecC
Confidence            14899999999999999988        999999999999999999998874    445445678899999999999999


Q ss_pred             ccccCCCCCCCccccccCCCCCCCCCcEeeccceEEEEcCCCCeEEEEeccCCccCCCHHHHHHHHHc------CCcchH
Q 017197          210 VYLKKPDFYRDPVFQQFGNPIPLKRPAMTAEPSILIRKLRPQDLFLIFASDGLWEQLTDEAAVEIVCK------NPRAGI  283 (375)
Q Consensus       210 ~~~k~~~~~~~~~~~~~~~~~~~~~~~v~~~P~i~~~~l~~~D~~LvLaSDGlwd~l~~~ei~~iv~~------~~~~~~  283 (375)
                      ..+|...            ..|+++|.|+++|++..+.++++| |||||||||||+|+++++++.+..      .+.+.+
T Consensus       233 ~~~k~~~------------~~~~~~~~v~~~Pdv~~~~l~~~D-~llL~SDGl~d~ls~~e~v~~v~~~~~~~~~~~~~~  299 (377)
T 3d8k_A          233 FDFKKGG------------QGKLQQDLVSAVPDVTTFFAYPGD-DIVAGTAGAFAHFRSHAAIAAAIALYPVSPETVLDA  299 (377)
T ss_dssp             GGGSCC---------------CCSSCSSBCCCEEEEEEECTTC-EEEEECGGGGCSCSSHHHHHHHHTTSCCCGGGHHHH
T ss_pred             hhhhccc------------ccccccCccccCCcEEEEEcCCCC-EEEEEECCcccCCCcHHHHHHHHHHhhccCCCHHHH
Confidence            9887542            246678899999999999999998 677899999999999999875543      245667


Q ss_pred             HHHHHHHHHHHHHHhhhhhhHHHHhhhccCCCCCCCCeEEEEEEcCCCC
Q 017197          284 AKRLVRAALQEAARKREVGYKEIKKLKRGIRRHFHDDITVIVIYLDHHQ  332 (375)
Q Consensus       284 a~~Lv~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~DNiTvIvv~l~~~~  332 (375)
                      |+.|++.|+.                     +++.||||||||+|....
T Consensus       300 a~~Lv~~A~~---------------------~g~~DNiTvivv~~~~~~  327 (377)
T 3d8k_A          300 AKAMVVNAKR---------------------RKVTKNISTFVRHLPESR  327 (377)
T ss_dssp             HHHHHHTTTT---------------------SSCCSCCCEEEEECCSSC
T ss_pred             HHHHHHHHHh---------------------cCCCCCEEEEEEEecCCc
Confidence            8888888865                     668999999999997655


No 10 
>2irm_A Mitogen-activated protein kinase kinase kinase 7 interacting protein 1; TAK1-binding protein, TAB1; 3.00A {Anopheles gambiae}
Probab=100.00  E-value=1.2e-43  Score=347.67  Aligned_cols=285  Identities=19%  Similarity=0.261  Sum_probs=215.8

Q ss_pred             eeeccCCCCCcCceee-----EEecC-Cc---ccCCceeeec-CCCcEEEEEEcCCCchHHHHHHHHHHHHHHHH-----
Q 017197           21 MWHSDLKPHASGDYSI-----AVVQA-NS---CLEDQSQVFT-SPSATYVGVYDGHGGPEASRFVNKHLFPYLHR-----   85 (375)
Q Consensus        21 ~~~~~~~~~~~~~~~~-----~~~~~-r~---~~eD~~~~~~-~~~~~l~gV~DG~GG~~aa~~a~~~l~~~l~~-----   85 (375)
                      .|+++|+.+.......     ...+| |+   .|||++++.. .++..||||||||||+.+|++++++++..|.+     
T Consensus         4 ~~~~~~~~~~~~~~g~~~~~~~~~~G~r~~~~~nED~~~~~~~~~~~~lf~V~DGhGG~~aa~~as~~l~~~l~~~~l~~   83 (358)
T 2irm_A            4 SWTDDLKVCNQTGVGEAINQIYKDDGRRCEGYESRDKKCLCISDNNTSLYAILSGHNGVTVAENALQEMAAELLLGQLNV   83 (358)
T ss_dssp             CCGGGSCBCTTEEEEEECCEEECSSSCEEECSSCCEEEEEEECSSSEEEEEEEEEESCSHHHHHHHHHHHHHSSSSTTTT
T ss_pred             CcccccccCCCCCCcccccceeecCCCCCCCCCCCceEEEEECCCCEEEEEEEcCCCCHHHHHHHHHHHHHHHHHhhhcc
Confidence            6999999998544322     33345 44   4999998774 46789999999999999999999999999853     


Q ss_pred             -----hhHHHHHHHHHHHHHHHHHHHHHhC----------C-----------CC----------CCcccccceEEEEEEe
Q 017197           86 -----LSAEVIKKAFHATEEEFLRLVKRVL----------P-----------VR----------PQIASVGSCCLVGAIS  129 (375)
Q Consensus        86 -----~~~~~l~~a~~~~~~~l~~~~~~~~----------~-----------~~----------~~~~~~GtT~~v~~i~  129 (375)
                           .+.+.|.++|..+++.|.+...+..          .           ..          .....+|||+++++|.
T Consensus        84 ~~~~~~~~~~l~~a~~~~d~~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~GtTav~~li~  163 (358)
T 2irm_A           84 CNTDEAVKELIRQSFMSVEKGYFDSINPHVATKTAIQLHLSADGMNQYEISQQFENVLQKLDSLNNALSVGSSAVLALIH  163 (358)
T ss_dssp             CCSHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHTTC---------------CCCTHHHHHTTTTCEEEEEEEEEE
T ss_pred             ccchhhHHHHHHHHHHHHHHHHHHHHHhhhhccccccccccccccccccchhhccchhhhcccccCCCCCCCcEEEEEEE
Confidence                 3467899999999998876432100          0           00          0123589999999999


Q ss_pred             CCEEEEEEcCCceeEEeeeeCCCCCceeEEEEccCCCCCCCHHHHHHHHhhCCCCCceEEeecCeeeecCccccccccCc
Q 017197          130 NDVLYVANLGDSRAVLGRRVSDDSKVKVAAERLSTDHNVGVEEVRKEVEALHPDDSHIVVYARGVWRIKGIIQVSRSIGD  209 (375)
Q Consensus       130 ~~~l~vanvGDSr~~l~r~~~~~~~~~~~~~~LT~dH~~~~~~e~~ri~~~~p~~~~~~~~~~g~~r~~g~l~vtRalGd  209 (375)
                      ++++|+|||||||+|++|...+ |  .+++++||+||++.++.|+.||.+.++.    +..    .|+.|.+ +|||||+
T Consensus       164 ~~~l~vAnvGDSRa~l~r~~~~-g--~~~~~~LT~DH~~~~~~E~~Ri~~~Gg~----v~~----~r~~g~l-lTRalGd  231 (358)
T 2irm_A          164 RSHLYLGNIGNCRALLCKTDEH-D--TLTVTQLSVDHNLLNAEEAARLFRLGLM----AQN----FEGVPLY-STRCIGN  231 (358)
T ss_dssp             SSEEEEEEESSCEEEEEECCTT-C--SCEEEECSCCCBTTSHHHHHHHHTTTCC----GGG----GTTCTTC-BSBCEEC
T ss_pred             CCEEEEEEcccCeEEEEEecCC-C--ceeeEeCCCCCCCCCHHHHHHHHHcCCe----Eec----cCcCCEE-cccCCcC
Confidence            9999999999999999998311 1  3579999999999999999999987532    211    3677776 9999999


Q ss_pred             ccccCCCCCCCccccccCCCCCCCCCcEeeccceEE-EEcCCCCeEEEEeccCCccCCC----------HHHHHHHHHc-
Q 017197          210 VYLKKPDFYRDPVFQQFGNPIPLKRPAMTAEPSILI-RKLRPQDLFLIFASDGLWEQLT----------DEAAVEIVCK-  277 (375)
Q Consensus       210 ~~~k~~~~~~~~~~~~~~~~~~~~~~~v~~~P~i~~-~~l~~~D~~LvLaSDGlwd~l~----------~~ei~~iv~~-  277 (375)
                      ..+|....       ......|.+.+.|+++|++.. +.+.++|.|||||||||||+|+          +++++++++. 
T Consensus       232 ~~~K~~~~-------~~~~~~~~~~~~v~~~Pdi~~~~~l~~~d~fllL~SDGl~d~l~~~~~~~~~~~~~ei~~~v~~~  304 (358)
T 2irm_A          232 YLGKAGYK-------DCNFLSSATAEPVIFEPEIVGGIQITPACRFLVLMSSGLCRALHEIFPGDASTGNRELVRMISEE  304 (358)
T ss_dssp             HHHHTTGG-------GSSSSTTCSSCSSBCCCEEEEEEECCTTEEEEEEECHHHHHHHHHHSCSSSSHHHHHHHHHHHHH
T ss_pred             HHHhcccc-------ccccccccCCCCEeccCeEEEEEEeCCCCcEEEEECCCcccCccccccccccccHHHHHHHHHHH
Confidence            88764210       111112345678999999994 9999999999999999999999          8999999986 


Q ss_pred             ----CCcchHHHHHHHHHHHHHHHhhhhhhHHHHhh-hccCCCC--CCCCeEEEEEEcCCC
Q 017197          278 ----NPRAGIAKRLVRAALQEAARKREVGYKEIKKL-KRGIRRH--FHDDITVIVIYLDHH  331 (375)
Q Consensus       278 ----~~~~~~a~~Lv~~A~~~~~~~~~~~~~~~~~~-~~~~~~~--~~DNiTvIvv~l~~~  331 (375)
                          .+++.+|+.|++.|+..+...       +... ..+.+||  +.||||||||+|..+
T Consensus       305 ~~~~~~~~~~a~~Lv~~A~~~~~~~-------~~~~~~~~~~~Gg~~~DNiTvivv~~~~p  358 (358)
T 2irm_A          305 FQNQSTLGGVAQSVVHRIVQAHHDT-------YMQLVEEHRSVTFNSRDDVTLLIRNFNYA  358 (358)
T ss_dssp             TTTCCSHHHHHHHHHHHHHHHHHHH-------HHHHHSSSCCCCCCEECCEEEEEEESCC-
T ss_pred             HhcCCCHHHHHHHHHHHHHHhhhhh-------hccccccccccCCCCCCCeEEEEEeCCCC
Confidence                466788999999998865322       1111 1223356  899999999999753


No 11 
>4da1_A Protein phosphatase 1K, mitochondrial; metal-ION-assisted catalysis, dehydrogenase phosphatase, hydrolase; 2.38A {Homo sapiens} PDB: 3qht_A 1l2n_A
Probab=100.00  E-value=1.7e-42  Score=342.90  Aligned_cols=259  Identities=24%  Similarity=0.352  Sum_probs=210.2

Q ss_pred             ceeeccCCCCCcCceeeEEecC-CcccCCceeeec-CCCcEEEEEEcCCCchHHHHHHHHHHHHHHHH------hhHHHH
Q 017197           20 LMWHSDLKPHASGDYSIAVVQA-NSCLEDQSQVFT-SPSATYVGVYDGHGGPEASRFVNKHLFPYLHR------LSAEVI   91 (375)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~-r~~~eD~~~~~~-~~~~~l~gV~DG~GG~~aa~~a~~~l~~~l~~------~~~~~l   91 (375)
                      +.|...+|......|+.++.+| |..|||++++.. .++..+|+|||||||+.+++++++.+.+.+.+      ...+.|
T Consensus       110 ~~~g~p~p~~~~~~~g~~s~~G~R~~NED~~~~~~~~~~~~l~~VaDG~GG~~~g~~as~~~~~~l~~~~~~~~~~~~~l  189 (389)
T 4da1_A          110 FQAGKPIPKISLENVGCASQIGKRKENEDRFDFAQLTDEVLYFAVYDGHGGPAAADFCHTHMEKCIMDLLPKEKNLETLL  189 (389)
T ss_dssp             ---------CCGGGCEEEEECTTSSSCCEEEEEEECSSSEEEEEEEEEESSTHHHHHHHHHHHHHHHHHTTTCCCHHHHH
T ss_pred             eeEcCcCCcccceeEEEecCCCCCCCCcceeeeeecCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHHHhccccCHHHHH
Confidence            4566667777667777777777 999999998864 56789999999999999999999999999877      457789


Q ss_pred             HHHHHHHHHHHHHHHHHhCCCCCCcccccceEEEEEEeCC-EEEEEEcCCceeEEeeeeCCCCCceeEEEEccCCCCCCC
Q 017197           92 KKAFHATEEEFLRLVKRVLPVRPQIASVGSCCLVGAISND-VLYVANLGDSRAVLGRRVSDDSKVKVAAERLSTDHNVGV  170 (375)
Q Consensus        92 ~~a~~~~~~~l~~~~~~~~~~~~~~~~~GtT~~v~~i~~~-~l~vanvGDSr~~l~r~~~~~~~~~~~~~~LT~dH~~~~  170 (375)
                      .++|..+++.+.+.....  .......+|||++++++.++ ++|++||||||+|++|++        .+.+||+||++.+
T Consensus       190 ~~a~~~~n~~i~~~~~~~--~~~~~~~~GtT~~~~li~~~~~l~vanvGDSRayl~r~g--------~~~~LT~DHs~~~  259 (389)
T 4da1_A          190 TLAFLEIDKAFSSHARLS--ADATLLTSGTTATVALLRDGIELVVASVGDSRAILCRKG--------KPMKLTIDHTPER  259 (389)
T ss_dssp             HHHHHHHHHHHHHHHHHS--SCGGGGGCEECEEEEEEETTTEEEEEEESSCEEEEEETT--------EEEECCCCCCTTS
T ss_pred             HHHHHHHHHHHHHHhhhc--cccccCCCCCeEEEEEEEcCCeEEEEEeeccEEEEEECC--------EeEEeCCCCCCCC
Confidence            999999999998876532  22234468999999999865 999999999999999998        9999999999999


Q ss_pred             HHHHHHHHhhCCCCCceEEe-ecCeeeecCccccccccCcccccCCCCCCCccccccCCCCCCCCCcEeeccceEEEEcC
Q 017197          171 EEVRKEVEALHPDDSHIVVY-ARGVWRIKGIIQVSRSIGDVYLKKPDFYRDPVFQQFGNPIPLKRPAMTAEPSILIRKLR  249 (375)
Q Consensus       171 ~~e~~ri~~~~p~~~~~~~~-~~g~~r~~g~l~vtRalGd~~~k~~~~~~~~~~~~~~~~~~~~~~~v~~~P~i~~~~l~  249 (375)
                      +.|+.|+...+    |.+.. ..+..+++|.+++|||||+..+|..+                    ++++|++..+.+.
T Consensus       260 ~~E~~Ri~~~g----G~v~~~~~~~~~~~g~l~ltRalGd~~~k~~~--------------------v~~~pdi~~~~l~  315 (389)
T 4da1_A          260 KDEKERIKKCG----GFVAWNSLGQPHVNGRLAMTRSIGDLDLKTSG--------------------VIAEPETKRIKLH  315 (389)
T ss_dssp             HHHHHHHHHHT----CCEECC---CCEETTTBSCSBCEECGGGGGGT--------------------CBCCCEEEEEECC
T ss_pred             HHHHHHHHHcC----CeEecccCCCccCCCeEeeEeeeCChhhccCC--------------------CCCCCceEEEEEc
Confidence            99999999884    33332 23456889999999999999886543                    6799999999999


Q ss_pred             CC-CeEEEEeccCCccCCCHHHHHHHHHcC-CcchHHHHHHHHHHHHHHHhhhhhhHHHHhhhccCCCCCCCCeEEEEEE
Q 017197          250 PQ-DLFLIFASDGLWEQLTDEAAVEIVCKN-PRAGIAKRLVRAALQEAARKREVGYKEIKKLKRGIRRHFHDDITVIVIY  327 (375)
Q Consensus       250 ~~-D~~LvLaSDGlwd~l~~~ei~~iv~~~-~~~~~a~~Lv~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~DNiTvIvv~  327 (375)
                      ++ |.|||||||||||+|+++++.+++... +++.+|..|++.|+..+                     +.||||||||+
T Consensus       316 ~~~dd~llL~SDGL~d~l~~~ei~~il~~~~~~~~~a~~Lv~~A~~~g---------------------~~DNiTvivv~  374 (389)
T 4da1_A          316 HADDSFLVLTTDGINFMVNSQEICDFVNQCHDPNEAAHAVTEQAIQYG---------------------TEDNSTAVVVP  374 (389)
T ss_dssp             SSSCEEEEEECHHHHTTCCHHHHHHHHHHSSSHHHHHHHHHHHHHHHT---------------------CCSCEEEEEEE
T ss_pred             CCCCcEEEEEeCCcccCCCHHHHHHHHHhcCCHHHHHHHHHHHHHHcC---------------------CCCCeEEEEEE
Confidence            76 679999999999999999999999874 67788999999998844                     68999999999


Q ss_pred             cCCCCC
Q 017197          328 LDHHQK  333 (375)
Q Consensus       328 l~~~~~  333 (375)
                      |....+
T Consensus       375 ~~~~~~  380 (389)
T 4da1_A          375 FGAWGK  380 (389)
T ss_dssp             ECCC--
T ss_pred             ecCCCC
Confidence            988663


No 12 
>2isn_A NYSGXRC-8828Z, phosphatase; pathogenic strain, praseodymium, sulfate structural genomics, PSI-2, protein structure initiative; 1.90A {Toxoplasma gondii}
Probab=100.00  E-value=4.3e-42  Score=337.04  Aligned_cols=246  Identities=24%  Similarity=0.324  Sum_probs=200.3

Q ss_pred             ceeeEEecC-CcccCCceeeec----CCCcEEEEEEcCCCchHHHHHHHHHHHHHHHH---hhHHHHHHHHHHHHHHHHH
Q 017197           33 DYSIAVVQA-NSCLEDQSQVFT----SPSATYVGVYDGHGGPEASRFVNKHLFPYLHR---LSAEVIKKAFHATEEEFLR  104 (375)
Q Consensus        33 ~~~~~~~~~-r~~~eD~~~~~~----~~~~~l~gV~DG~GG~~aa~~a~~~l~~~l~~---~~~~~l~~a~~~~~~~l~~  104 (375)
                      .|..++++| |..|||++.+..    .++..||+|||||||..+|++++++|...|.+   ...+.|+++|..+++.|.+
T Consensus        14 ~~~~~s~~G~R~~nED~~~v~~~~~~~~~~~lf~VfDGHGG~~as~~a~~~l~~~l~~~~~~~~~~l~~a~~~~d~~i~~   93 (364)
T 2isn_A           14 TTVAATMLGRRPTDEDAILVSAPATSRPNVRIKAVFDGHAGEATSQYCAKHAAKHLGKLSEFTFAEVKKACLSLDAEIIR   93 (364)
T ss_dssp             EEEEEEECTTSSSCCEEEEEECC----CCEEEEEEEEEESCSHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHH
T ss_pred             EEEEEEcCCCCCcCCCeeEEeccCCCCCCeEEEEEEECCCCHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHH
Confidence            456667777 889999998763    46789999999999999999999999999865   4467899999999998876


Q ss_pred             HHHHhCCCCCCcccccceEEEEEEeC------------------------------------------------------
Q 017197          105 LVKRVLPVRPQIASVGSCCLVGAISN------------------------------------------------------  130 (375)
Q Consensus       105 ~~~~~~~~~~~~~~~GtT~~v~~i~~------------------------------------------------------  130 (375)
                      ....       ...+|||++++++.+                                                      
T Consensus        94 ~~~~-------~~~~GtT~v~~~i~~~~~p~~~~~~g~~~~~~~~~~~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (364)
T 2isn_A           94 KLGP-------KHVAGSTGIIVAIERLSAPVVENVVGREIVPRAHEETFVPLEKLIQEEEEAEHPELVGRYPRVPDVQQK  166 (364)
T ss_dssp             HHCS-------SSCCEECEEEEEEEECSSCEEEEEETTEECCC-----CCCHHHHHHHHHHC-----CCSSCCCCCCEEE
T ss_pred             hccc-------CCCCCcceehhhhhccccccccccccccccccccccchhhhhhhhhhhhhccccccccccccccccccc
Confidence            5421       135899999988852                                                      


Q ss_pred             ------CEEEEEEcCCceeEEe-eeeCCCCCceeEEEEccCCCCCCCHHHHHHHHhhCCCCCceEEeecCeeeecCcccc
Q 017197          131 ------DVLYVANLGDSRAVLG-RRVSDDSKVKVAAERLSTDHNVGVEEVRKEVEALHPDDSHIVVYARGVWRIKGIIQV  203 (375)
Q Consensus       131 ------~~l~vanvGDSr~~l~-r~~~~~~~~~~~~~~LT~dH~~~~~~e~~ri~~~~p~~~~~~~~~~g~~r~~g~l~v  203 (375)
                            +++|++||||||+|++ |++        ++.+||+||++.++.|+.||.+.+    +.+.. .+.+|++|.|++
T Consensus       167 ~~~~g~~~l~vanvGDSRayl~~r~g--------~~~~LT~DH~~~~~~e~~rI~~~g----G~v~~-~~~~rv~g~l~l  233 (364)
T 2isn_A          167 TIPAGSFLVTAINIGDSRATLIHSDG--------GLTRLSKDHKPNHPTEASRIEKAG----GSVET-FDVPRVDGVLAL  233 (364)
T ss_dssp             EECTTCEEEEEEEESSCEEEEECTTS--------CEEECCCCCCTTSHHHHHHHHHTT----CCEEE-SSSEEETTTBSC
T ss_pred             ccccCccEEEEEECccCEEEEEeeCC--------EEEEcCcCCCCCCHHHHHHHHHcC----CeEec-CCCcccCCceee
Confidence                  3899999999999999 566        899999999999999999998873    44433 356799999999


Q ss_pred             ccccCcccccCCCCCCCccccccCCCCCCCCCcEeeccceEEEEcCCCCeEEEEeccCCccCCC--HHHHHHHHH-----
Q 017197          204 SRSIGDVYLKKPDFYRDPVFQQFGNPIPLKRPAMTAEPSILIRKLRPQDLFLIFASDGLWEQLT--DEAAVEIVC-----  276 (375)
Q Consensus       204 tRalGd~~~k~~~~~~~~~~~~~~~~~~~~~~~v~~~P~i~~~~l~~~D~~LvLaSDGlwd~l~--~~ei~~iv~-----  276 (375)
                      |||||+..+|...            .++...+.|+++|++..+.+.++| |||||||||||+++  ++++.+++.     
T Consensus       234 tRalGd~~~k~~~------------~l~~~~~~v~~~Pdv~~~~l~~~D-~llL~SDGl~d~l~~~~~~v~~~~~~~~~~  300 (364)
T 2isn_A          234 SRAFGDSDFKMNP------------NLPPEEQKVIAVPDVRQFYALSSD-LLLLACDGVYEPSGMDWAYVRDLTVAEMQR  300 (364)
T ss_dssp             SBCEECGGGSCCC------------SSCGGGSSSBCCCEEEEEEECTTC-EEEEECHHHHCSSSCCHHHHHHHHHHHHHH
T ss_pred             EEEecchhhcccc------------ccCcccCceEEEeEEEEEECCCCC-EEEEEcCCCCCCCCCCHHHHHHHHHHHHhh
Confidence            9999999886422            123345678999999999999998 88899999999976  777776642     


Q ss_pred             c-CCcchHHHHHHHHHHHHHHHhhhhhhHHHHhhhccCCCCCCCCeEEEEEEcCCCC
Q 017197          277 K-NPRAGIAKRLVRAALQEAARKREVGYKEIKKLKRGIRRHFHDDITVIVIYLDHHQ  332 (375)
Q Consensus       277 ~-~~~~~~a~~Lv~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~DNiTvIvv~l~~~~  332 (375)
                      . .+.+.+|..|++.|+.                     +++.||||||||+|....
T Consensus       301 ~~~~~~~~a~~Lv~~A~~---------------------~g~~DNiTvivv~~~~~~  336 (364)
T 2isn_A          301 SKGDLEEVAARVMDYAYD---------------------MNSQDNISVMLVAFHNQE  336 (364)
T ss_dssp             TTSCHHHHHHHHHHHHHH---------------------TTCCSCEEEEEEEECSSC
T ss_pred             cCCCHHHHHHHHHHHHHh---------------------cCCCCCEEEEEEEcCCCC
Confidence            2 3567889999999987                     457999999999997654


No 13 
>2i44_A Serine-threonine phosphatase 2C; PSI-2, 8817Z, structural genomics, protein structure initiative; 2.04A {Toxoplasma gondii}
Probab=100.00  E-value=2.1e-41  Score=327.09  Aligned_cols=253  Identities=22%  Similarity=0.366  Sum_probs=195.4

Q ss_pred             ceeeEEecC-CcccCCceeeec-----CCCcEEEEEEcCCCchHHHHHHHHHHHHHHHH---------------------
Q 017197           33 DYSIAVVQA-NSCLEDQSQVFT-----SPSATYVGVYDGHGGPEASRFVNKHLFPYLHR---------------------   85 (375)
Q Consensus        33 ~~~~~~~~~-r~~~eD~~~~~~-----~~~~~l~gV~DG~GG~~aa~~a~~~l~~~l~~---------------------   85 (375)
                      .|+.++.+| |+.|||++++..     ..+..||+|||||||+.+++++++.+++.|.+                     
T Consensus        23 ~~~~~s~~G~R~~nED~~~~~~~~~~~~~~~~l~~V~DGhGG~~~~~~as~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~  102 (324)
T 2i44_A           23 DAAIFTDIGGRKHQEDRFTLCPQLVPGRDDCAFFGVFDGTVGDFASENVKDLVVPQLISSPAWQEVTEMLRSDVPATEVD  102 (324)
T ss_dssp             EEEEEEECTTSSSCCEEEEEESCCSTTCSSEEEEEEEEEESSSHHHHHHHHHHHHHHHTCHHHHHHHHHHTSCCCHHHHH
T ss_pred             EEEEEECCCCCCccCCeEEEEecCCCCCCCeEEEEEeCCCCchHHHHHHHHHHHHHHHhhhHHHHHHHHhhccCCccccc
Confidence            356666666 889999998873     34678999999999999999999999988754                     


Q ss_pred             -----hhHHHHHHHHHHHHHHHHHHHHHhCCCCCCcccccceEEEEEEeCCEEEEEEcCCceeEEeeeeCCCCCceeEEE
Q 017197           86 -----LSAEVIKKAFHATEEEFLRLVKRVLPVRPQIASVGSCCLVGAISNDVLYVANLGDSRAVLGRRVSDDSKVKVAAE  160 (375)
Q Consensus        86 -----~~~~~l~~a~~~~~~~l~~~~~~~~~~~~~~~~~GtT~~v~~i~~~~l~vanvGDSr~~l~r~~~~~~~~~~~~~  160 (375)
                           .+.+.|.++|..+++.|.+.....   ......+|||+  +++.++++|++||||||+|++|.++.    .+++.
T Consensus       103 ~~~~~~~~~~l~~a~~~~~~~i~~~~~~~---~~~~~g~gtt~--~~i~~~~l~vanvGDSRa~l~r~~~~----g~~~~  173 (324)
T 2i44_A          103 EKLPQLLDQAVDDMYKNADNELVKMCEQL---NKDYASSTSVT--AVLAKGFVAVGHLGDSRIAMGVETPN----GLNCE  173 (324)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHT---TCSSCEECEEE--EEEETTEEEEEEESSCEEEEEEEETT----EEEEE
T ss_pred             cccchhHHHHHHHHHHHHHHHHHHHHhhc---CCCCCCCCeEE--EEEECCeEEEEEccCceEEEEeccCC----CceEE
Confidence                 124568888888988888776532   12223344444  44899999999999999999998411    12599


Q ss_pred             EccCCCCCCCHHHHHHHHhhCCCCCceEEee----cCeeeecCccccccccCc----ccccCCCCCCCccccccCCCCCC
Q 017197          161 RLSTDHNVGVEEVRKEVEALHPDDSHIVVYA----RGVWRIKGIIQVSRSIGD----VYLKKPDFYRDPVFQQFGNPIPL  232 (375)
Q Consensus       161 ~LT~dH~~~~~~e~~ri~~~~p~~~~~~~~~----~g~~r~~g~l~vtRalGd----~~~k~~~~~~~~~~~~~~~~~~~  232 (375)
                      +||+||++.++.|++||.+.+    +.+...    .+.++..|.+++|||+|+    ..+|..           -+..+.
T Consensus       174 ~LT~DH~~~~~~E~~Ri~~~G----g~v~~~~~~~~~~~~~~g~l~~sra~Gd~p~~~~~~~~-----------~g~~~~  238 (324)
T 2i44_A          174 FLTVDHKPDMPHEKLRIMRNG----GSVEYLHNHNNKPFIRGGDFSFRKSRGEQPMQLQYSRA-----------FGGKDL  238 (324)
T ss_dssp             ESCCCCCTTSHHHHHHHHHTT----CEEECCTTCTTSCEEECTTHHHHHHTTCCCCCBSSSBC-----------EECGGG
T ss_pred             ECCCCCCCcCHHHHHHHHHcC----CEEEecccccCCCccccCcccchhhcCCccccceeccc-----------cCCccc
Confidence            999999999999999999874    444211    123467889999999999    333321           011123


Q ss_pred             CCCcEeeccceEEEEcCCCCeEEEEeccCCccCCCHHHHHHHHHcC-----Ccch--HHHHHHHHHHHHHHHhhhhhhHH
Q 017197          233 KRPAMTAEPSILIRKLRPQDLFLIFASDGLWEQLTDEAAVEIVCKN-----PRAG--IAKRLVRAALQEAARKREVGYKE  305 (375)
Q Consensus       233 ~~~~v~~~P~i~~~~l~~~D~~LvLaSDGlwd~l~~~ei~~iv~~~-----~~~~--~a~~Lv~~A~~~~~~~~~~~~~~  305 (375)
                      +++.|+++|++..+.+.++|.|||||||||||+|+++++.+++...     +++.  +|..|++.|+.            
T Consensus       239 ~~~~v~~~pdv~~~~l~~~d~~llLaSDGl~d~ls~~ei~~~v~~~~~~~~~~~~~~~a~~L~~~A~~------------  306 (324)
T 2i44_A          239 KMYGLSNQPDVRVVRVTPQHRVMILATDGLWDVMSAAQAVEIAMQARQEGRNPAQALVEMTLAEQQSR------------  306 (324)
T ss_dssp             TTTTCBCCCEEEEEECCTTEEEEEEECHHHHTTCCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHT------------
T ss_pred             cCCeEeecCEEEEEEcCCCCeEEEEEcCchhccCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHh------------
Confidence            5678999999999999999988999999999999999999999753     5666  88888888876            


Q ss_pred             HHhhhccCCCCCCCCeEEEEEEcCC
Q 017197          306 IKKLKRGIRRHFHDDITVIVIYLDH  330 (375)
Q Consensus       306 ~~~~~~~~~~~~~DNiTvIvv~l~~  330 (375)
                               +++.||||||||+|..
T Consensus       307 ---------~g~~DNiTvivv~~~~  322 (324)
T 2i44_A          307 ---------NQSADNITAMTVFFKK  322 (324)
T ss_dssp             ---------TCCCCCEEEEEEEEC-
T ss_pred             ---------cCCCCCCEEEEEEeeC
Confidence                     5679999999999864


No 14 
>2pk0_A Serine/threonine protein phosphatase STP1; SI motif, signaling protein; 2.65A {Streptococcus agalactiae}
Probab=100.00  E-value=7.9e-37  Score=283.91  Aligned_cols=227  Identities=21%  Similarity=0.258  Sum_probs=180.5

Q ss_pred             ceeeEEecC--CcccCCceeeecCC-CcEEEEEEcCCCchHHHHHHHHHHHHHHH-H----------hhHHHHHHHHHHH
Q 017197           33 DYSIAVVQA--NSCLEDQSQVFTSP-SATYVGVYDGHGGPEASRFVNKHLFPYLH-R----------LSAEVIKKAFHAT   98 (375)
Q Consensus        33 ~~~~~~~~~--r~~~eD~~~~~~~~-~~~l~gV~DG~GG~~aa~~a~~~l~~~l~-~----------~~~~~l~~a~~~~   98 (375)
                      .|+.++.+|  |+.|||++.+.... +..+|+|||||||+.+++++++.+.+.|. +          .+.+.+.++|..+
T Consensus         7 ~~~~~s~~G~~r~~neD~~~~~~~~~~~~~~~V~DG~Gg~~~~~~as~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~   86 (250)
T 2pk0_A            7 EISLLTDIGQRRSNNQDFINQFENKAGVPLIILADGMGGHRAGNIASEMTVTDLGSDWAETDFSELSEIRDWMLVSIETE   86 (250)
T ss_dssp             EEEEEEECCTTCSCCCEEEEEEECTTCCEEEEEEEEECTTTHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHHHHHHHHHH
T ss_pred             EEEEecCCCCCCCcCCCceEeccCCCCcEEEEEEeCCCCcHHHHHHHHHHHHHHHHHHhhcccCChhhHHHHHHHHHHHH
Confidence            455656666  79999999887554 78999999999999999999988888887 3          2345688889999


Q ss_pred             HHHHHHHHHHhCCCCCCcccccceEEEEEEeCCEEEEEEcCCceeEEeeeeCCCCCceeEEEEccCCCCCCCHHHHHHHH
Q 017197           99 EEEFLRLVKRVLPVRPQIASVGSCCLVGAISNDVLYVANLGDSRAVLGRRVSDDSKVKVAAERLSTDHNVGVEEVRKEVE  178 (375)
Q Consensus        99 ~~~l~~~~~~~~~~~~~~~~~GtT~~v~~i~~~~l~vanvGDSr~~l~r~~~~~~~~~~~~~~LT~dH~~~~~~e~~ri~  178 (375)
                      ++.+.+.....    + ...+|||++++++.+++++++|+||||+|++|++        ++.+||.||++.++.+...  
T Consensus        87 ~~~l~~~~~~~----~-~~~~gtT~~~~~i~~~~l~~anvGDsr~~l~r~g--------~~~~lt~dh~~~~~~~~~g--  151 (250)
T 2pk0_A           87 NRKIYELGQSD----D-YKGMGTTIEAVAIVGDNIIFAHVGDSRIGIVRQG--------EYHLLTSDHSLVNELVKAG--  151 (250)
T ss_dssp             HHHHHHHHHHT----T-CTTCEECEEEEEEETTEEEEEEESSCEEEEEETT--------EEEECCCCCBHHHHHHHTT--
T ss_pred             HHHHHHHHhhC----C-CCCCcceEEEEEEECCeEEEEEeCCCeEEEEcCC--------cEEEeCCCCCHHHHHHHcC--
Confidence            88888775532    1 3458999999999999999999999999999988        8999999999876543321  


Q ss_pred             hhCCCCCceEEeecCeeeecCccccccccCcccccCCCCCCCccccccCCCCCCCCCcEeeccceEEEEcCCCCeEEEEe
Q 017197          179 ALHPDDSHIVVYARGVWRIKGIIQVSRSIGDVYLKKPDFYRDPVFQQFGNPIPLKRPAMTAEPSILIRKLRPQDLFLIFA  258 (375)
Q Consensus       179 ~~~p~~~~~~~~~~g~~r~~g~l~vtRalGd~~~k~~~~~~~~~~~~~~~~~~~~~~~v~~~P~i~~~~l~~~D~~LvLa  258 (375)
                             + +.. .+....++.+.+||+||+...                          ++|++..+++.++| +||||
T Consensus       152 -------~-i~~-~~~~~~~~~~~ltralG~~~~--------------------------~~p~~~~~~l~~gd-~lll~  195 (250)
T 2pk0_A          152 -------Q-LTE-EEAASHPQKNIITQSIGQANP--------------------------VEPDLGVHLLEEGD-YLVVN  195 (250)
T ss_dssp             -------S-SCH-HHHHTCCSCCCBSCCBSCSSC--------------------------CCCEEEEEECCTTC-EEEEE
T ss_pred             -------C-CCH-HHHHhCCCcceEEeecCCCCC--------------------------ccceEEEEEcCCCC-EEEEE
Confidence                   0 000 011123445589999998643                          68899999999998 67789


Q ss_pred             ccCCccCCCHHHHHHHHHcC-CcchHHHHHHHHHHHHHHHhhhhhhHHHHhhhccCCCCCCCCeEEEEEEcCCC
Q 017197          259 SDGLWEQLTDEAAVEIVCKN-PRAGIAKRLVRAALQEAARKREVGYKEIKKLKRGIRRHFHDDITVIVIYLDHH  331 (375)
Q Consensus       259 SDGlwd~l~~~ei~~iv~~~-~~~~~a~~Lv~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~DNiTvIvv~l~~~  331 (375)
                      ||||||+++++++.+++... +++.++..|++.|+.                     +++.||+|+||+++...
T Consensus       196 SDGl~d~l~~~~i~~~~~~~~~~~~~a~~L~~~a~~---------------------~g~~DniTvivv~~~~~  248 (250)
T 2pk0_A          196 SDGLTNMLSNADIATVLTQEKTLDDKNQDLITLANH---------------------RGGLDNITVALVYVESE  248 (250)
T ss_dssp             CHHHHTTSCHHHHHHHHTSSSCHHHHHHHHHHHHHH---------------------TTCCSCEEEEEEEECC-
T ss_pred             CCCCCCCcCHHHHHHHHhcCCCHHHHHHHHHHHHHH---------------------cCCCCCeEEEEEEeeCC
Confidence            99999999999999999875 667788999999877                     44689999999999753


No 15 
>1txo_A Putative bacterial enzyme; serine/threonine protein phosphatases, PSTP/PPP, structural genomics, PSI, protein structure initiative; 1.95A {Mycobacterium tuberculosis} SCOP: d.219.1.1 PDB: 2cm1_A
Probab=100.00  E-value=5.4e-37  Score=282.78  Aligned_cols=220  Identities=22%  Similarity=0.280  Sum_probs=174.8

Q ss_pred             eeeEEecC--CcccCCceeeecCCCcEEEEEEcCCCchHHHHHHHHHHHHHHHH--------hhHHHHHHHHHHHHHHHH
Q 017197           34 YSIAVVQA--NSCLEDQSQVFTSPSATYVGVYDGHGGPEASRFVNKHLFPYLHR--------LSAEVIKKAFHATEEEFL  103 (375)
Q Consensus        34 ~~~~~~~~--r~~~eD~~~~~~~~~~~l~gV~DG~GG~~aa~~a~~~l~~~l~~--------~~~~~l~~a~~~~~~~l~  103 (375)
                      |..++.+|  |+.|||++++    +..+|+|||||||+.+++++++.+.+.|.+        .+.+.+.++|..+++.+.
T Consensus         7 ~~~~s~~G~~r~~nED~~~~----~~~~~~V~DG~Gg~~~~~~as~~~~~~l~~~~~~~~~~~~~~~l~~a~~~~~~~i~   82 (237)
T 1txo_A            7 YAARSDRGLVRANNEDSVYA----GARLLALADGMGGHAAGEVASQLVIAALAHLDDDEPGGDLLAKLDAAVRAGNSAIA   82 (237)
T ss_dssp             EEEEEECCSSCSSCCEEEEE----CSSEEEEEEEECTTTHHHHHHHHHHHHHGGGGSSCCCSCHHHHHHHHHHHHHHHHH
T ss_pred             EEEecCCCCCCCcCCCcccc----CCCEEEEEeCCCCcHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHHHHHHH
Confidence            55556666  7999999876    467999999999999999999999999876        346778899999999888


Q ss_pred             HHHHHhCCCCCCcccccceEEEEEEeCCEEEEEEcCCceeEEeeeeCCCCCceeEEEEccCCCCCCCHHHHHHHHhhCCC
Q 017197          104 RLVKRVLPVRPQIASVGSCCLVGAISNDVLYVANLGDSRAVLGRRVSDDSKVKVAAERLSTDHNVGVEEVRKEVEALHPD  183 (375)
Q Consensus       104 ~~~~~~~~~~~~~~~~GtT~~v~~i~~~~l~vanvGDSr~~l~r~~~~~~~~~~~~~~LT~dH~~~~~~e~~ri~~~~p~  183 (375)
                      +.....    +....+|||++++++.+++++++|+||||+|++|++        ++.+||+||++.++.+..     +  
T Consensus        83 ~~~~~~----~~~~~~gtT~~~~~i~~~~l~~a~vGDsr~~l~r~g--------~~~~lt~dh~~~~~~~~~-----G--  143 (237)
T 1txo_A           83 AQVEME----PDLEGMGTTLTAILFAGNRLGLVHIGDSRGYLLRDG--------ELTQITKDDTFVQTLVDE-----G--  143 (237)
T ss_dssp             HHHHHC----GGGTTCEECEEEEEEETTEEEEEEESSCEEEEEETT--------EEEECSCCCBHHHHHHHT-----T--
T ss_pred             HHHhhC----CCCCCCcceEEEEEEECCEEEEEEEccCcEEEEeCC--------EeEEeCCCCCHHHHHHHc-----C--
Confidence            766532    223457999999999999999999999999999988        899999999976543221     1  


Q ss_pred             CCceEEeecCeeeecCccccccccCcccccCCCCCCCccccccCCCCCCCCCcEeeccceEEEEcCCCCeEEEEeccCCc
Q 017197          184 DSHIVVYARGVWRIKGIIQVSRSIGDVYLKKPDFYRDPVFQQFGNPIPLKRPAMTAEPSILIRKLRPQDLFLIFASDGLW  263 (375)
Q Consensus       184 ~~~~~~~~~g~~r~~g~l~vtRalGd~~~k~~~~~~~~~~~~~~~~~~~~~~~v~~~P~i~~~~l~~~D~~LvLaSDGlw  263 (375)
                         .+...... ..+....+||++|+.                           ..+|++..+++.++|.| ||||||||
T Consensus       144 ---~i~~~~~~-~~~~~~~~tr~lg~~---------------------------~~~p~~~~~~l~~~d~l-vl~SDGl~  191 (237)
T 1txo_A          144 ---RITPEEAH-SHPQRSLIMRALTGH---------------------------EVEPTLTMREARAGDRY-LLCSDGLS  191 (237)
T ss_dssp             ---SSCTTGGG-GCTTTTCBCCCBSSS---------------------------CCCCEEEEEECCTTCEE-EEECHHHH
T ss_pred             ---CCCHHHHh-hCccccceeeccCCC---------------------------CccceEEEEecCCCCEE-EEECCCCC
Confidence               00000000 111222589999863                           25889999999999965 67999999


Q ss_pred             cCCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhHHHHhhhccCCCCCCCCeEEEEEEcC
Q 017197          264 EQLTDEAAVEIVCKNPRAGIAKRLVRAALQEAARKREVGYKEIKKLKRGIRRHFHDDITVIVIYLD  329 (375)
Q Consensus       264 d~l~~~ei~~iv~~~~~~~~a~~Lv~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~DNiTvIvv~l~  329 (375)
                      |+++++++.++++..+++.+|..|++.|+.                     +++.||+||||++|.
T Consensus       192 d~l~~~~i~~~~~~~~~~~~a~~L~~~a~~---------------------~g~~DniTvivv~~~  236 (237)
T 1txo_A          192 DPVSDETILEALQIPEVAESAHRLIELALR---------------------GGGPDNVTVVVADLE  236 (237)
T ss_dssp             TTSCHHHHHHHHTSSSHHHHHHHHHHHHHH---------------------TTCCSCEEEEEEEEE
T ss_pred             CCCCHHHHHHHHhcCCHHHHHHHHHHHHHH---------------------cCCCCCeEEEEEEee
Confidence            999999999999877788899999999987                     446899999999985


No 16 
>2j82_A TPPHA, protein serine-threonine phosphatase; PP2C family phosphatase, hydrolase; 1.28A {Synechococcus elongatus} PDB: 2j86_A 2y09_A 2xzv_A
Probab=100.00  E-value=5.7e-36  Score=276.30  Aligned_cols=222  Identities=22%  Similarity=0.253  Sum_probs=163.8

Q ss_pred             eeeEEecC--CcccCCceeeecCC-CcEEEEEEcCCCchHHHHHHHHHHHHHHHH-----------hhHHHHHHHHHHHH
Q 017197           34 YSIAVVQA--NSCLEDQSQVFTSP-SATYVGVYDGHGGPEASRFVNKHLFPYLHR-----------LSAEVIKKAFHATE   99 (375)
Q Consensus        34 ~~~~~~~~--r~~~eD~~~~~~~~-~~~l~gV~DG~GG~~aa~~a~~~l~~~l~~-----------~~~~~l~~a~~~~~   99 (375)
                      |+.++.+|  |+.|||++ +...+ .. +|+|||||||+.+++++++.+.+.|.+           .+.+.+.++|..++
T Consensus         3 ~~~~s~~G~~r~~neD~~-~~~~~~~~-~~~V~DG~Gg~~~~~~as~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~   80 (240)
T 2j82_A            3 VAGLTDCGLIRKSNQDAF-YIDEKHQR-FFIVADGMGGHAGGEEASRLAVDHIRQYLETHLEDLQHDPVTLLRQAFLAAN   80 (240)
T ss_dssp             EEEEEECCSSCSSCCEEE-EECTTTCC-EEEEEEBC---CHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred             EEEeCCCCCCCCcCCCcc-EecCCCCe-EEEEEcCCCCchHHHHHHHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHH
Confidence            55555555  79999999 66443 34 999999999997777777777766654           12345778888888


Q ss_pred             HHHHHHHHHhCCCCCCcccccceEEEEEEe--CCEEEEEEcCCceeEEeeeeCCCCCceeEEEEccCCCCCCCHHHHHHH
Q 017197          100 EEFLRLVKRVLPVRPQIASVGSCCLVGAIS--NDVLYVANLGDSRAVLGRRVSDDSKVKVAAERLSTDHNVGVEEVRKEV  177 (375)
Q Consensus       100 ~~l~~~~~~~~~~~~~~~~~GtT~~v~~i~--~~~l~vanvGDSr~~l~r~~~~~~~~~~~~~~LT~dH~~~~~~e~~ri  177 (375)
                      +.+.+...    ..+....+|||++++++.  +++++++|+||||+|++|++        ++.+||.||++.++.++.. 
T Consensus        81 ~~l~~~~~----~~~~~~~~gtT~~~~~i~~~~~~l~~anvGDsr~~l~r~~--------~~~~lt~dh~~~~~~~~~g-  147 (240)
T 2j82_A           81 HAIVEQQR----QNSARADMGTTAVVILLDEKGDRAWCAHVGDSRIYRWRKD--------QLQQITSDHTWIAQAVQLG-  147 (240)
T ss_dssp             HHHHHHHT----TSCSCTTCCBCEEEEEECTTSSEEEEEEESSCEEEEEETT--------EEEECSCCCBHHHHC-----
T ss_pred             HHHHHHhh----cccCCCCCCceEEEEEEEecCCEEEEEEEccCceEEEeCC--------EEEEECCCCcHHHHHHHcC-
Confidence            88776543    222344579999999999  99999999999999999988        8999999999876543321 


Q ss_pred             HhhCCCCCceEEeecCeeeecCccccccccCcccccCCCCCCCccccccCCCCCCCCCcEeeccceEEEEcCCCCeEEEE
Q 017197          178 EALHPDDSHIVVYARGVWRIKGIIQVSRSIGDVYLKKPDFYRDPVFQQFGNPIPLKRPAMTAEPSILIRKLRPQDLFLIF  257 (375)
Q Consensus       178 ~~~~p~~~~~~~~~~g~~r~~g~l~vtRalGd~~~k~~~~~~~~~~~~~~~~~~~~~~~v~~~P~i~~~~l~~~D~~LvL  257 (375)
                              + +.. .+....++.+.+||+||+...                          .+|++..+++.++|. |||
T Consensus       148 --------~-i~~-~~~~~~~~~~~ltralG~~~~--------------------------~~p~~~~~~l~~gd~-lll  190 (240)
T 2j82_A          148 --------S-LTI-EQARQHPWRHVLSQCLGREDL--------------------------SQIDIQPIDLEPGDR-LLL  190 (240)
T ss_dssp             ----------------------CCCBSCCBSCTTC--------------------------CCCEEEEEECCTTCE-EEE
T ss_pred             --------C-CCH-HHHhcCCCcCeEeecCCCCCc--------------------------eeEEEEEEeeCCCCE-EEE
Confidence                    1 111 111234556689999999543                          688999999999995 668


Q ss_pred             eccCCccCCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhHHHHhhhccCCCCCCCCeEEEEEEc
Q 017197          258 ASDGLWEQLTDEAAVEIVCKNPRAGIAKRLVRAALQEAARKREVGYKEIKKLKRGIRRHFHDDITVIVIYL  328 (375)
Q Consensus       258 aSDGlwd~l~~~ei~~iv~~~~~~~~a~~Lv~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~DNiTvIvv~l  328 (375)
                      |||||||+++++++.+++...+++.++..|++.|+.                     +++.||+|+||+++
T Consensus       191 ~SDGl~d~l~~~~i~~~l~~~~~~~~a~~l~~~a~~---------------------~g~~DniTvivv~~  240 (240)
T 2j82_A          191 CSDGLTEELTDDVISIYLSEPNVQKAAAALVDAAKT---------------------HGGRDNVTVVVISV  240 (240)
T ss_dssp             ECHHHHTTSCHHHHHHHHTCSSHHHHHHHHHHHHHH---------------------TTCCSCEEEEEEEC
T ss_pred             ECCCCCCCCCHHHHHHHHccCCHHHHHHHHHHHHHH---------------------cCCCCCeEEEEEeC
Confidence            999999999999999999844667788999999876                     34689999999975


No 17 
>2jfr_A Ser-Thr phosphatase MSPP; hydrolase, PPM phosphatase, manganese, phosphate; 0.83A {Mycobacterium smegmatis} PDB: 2jfs_A 2jft_A 2v06_A
Probab=100.00  E-value=7e-35  Score=268.14  Aligned_cols=219  Identities=24%  Similarity=0.231  Sum_probs=169.6

Q ss_pred             ceeeEEecC--CcccCCceeeecCCCcEEEEEEcCCCch--HHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHHHHH
Q 017197           33 DYSIAVVQA--NSCLEDQSQVFTSPSATYVGVYDGHGGP--EASRFVNKHLFPYLHRL-SAEVIKKAFHATEEEFLRLVK  107 (375)
Q Consensus        33 ~~~~~~~~~--r~~~eD~~~~~~~~~~~l~gV~DG~GG~--~aa~~a~~~l~~~l~~~-~~~~l~~a~~~~~~~l~~~~~  107 (375)
                      .|..++.+|  |+.|||++++    +..+|+|||||||+  .+|+++.+.+.+.+... ..+.+.++|..+++.+.+...
T Consensus         7 ~~~~~s~~G~~r~~neD~~~~----~~~~~~V~DG~Gg~G~~as~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~l~~~~~   82 (234)
T 2jfr_A            7 SAATATDQGPVRENNQDACLA----DGILYAVADGFGARGHHASATALKTLSAGFAAAPDRDGLLEAVQQANLRVFELLG   82 (234)
T ss_dssp             EEEEEEECCSSCSSCCEEEEE----ETTEEEEEEEESTTHHHHHHHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHHHT
T ss_pred             EEEEecCCCCCCCcCCCccee----CCcEEEEEeCCCccHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhc
Confidence            355555655  7999999965    67899999999966  88888888888776541 157788999999988887543


Q ss_pred             HhCCCCCCcccccceEEEEEEeCCE---EEEEEcCCceeEEeeeeCCCCCceeEEEEccCCCCCCCHHHHHHHHhhCCCC
Q 017197          108 RVLPVRPQIASVGSCCLVGAISNDV---LYVANLGDSRAVLGRRVSDDSKVKVAAERLSTDHNVGVEEVRKEVEALHPDD  184 (375)
Q Consensus       108 ~~~~~~~~~~~~GtT~~v~~i~~~~---l~vanvGDSr~~l~r~~~~~~~~~~~~~~LT~dH~~~~~~e~~ri~~~~p~~  184 (375)
                      .    .+..  +|||++++++.++.   ++++|+||||+|++|++        ++.+||+||++.++.++..        
T Consensus        83 ~----~~~~--~gtT~~~~~i~~~~~~~l~~anvGDsr~~l~r~g--------~~~~lt~dh~~~~~~~~~g--------  140 (234)
T 2jfr_A           83 D----EPTV--SGTTLTAVAVFEPGQGGPLVVNIGDSPLYRIRDG--------HMEQLTDDHSVAGELVRMG--------  140 (234)
T ss_dssp             T----SSSC--CEECEEEEECCCGGGTSCEEEEESSCCEEEEETT--------EEEECSCCCBHHHHHHHTT--------
T ss_pred             c----CCCC--CCccEEEEEEECCCccEEEEEEEccCceEEEECC--------EEEEeCCCCCHHHHHHHcC--------
Confidence            2    1111  89999999999888   99999999999999988        8999999999875433211        


Q ss_pred             CceEEeecCeeeecCccccccccCcccccCCCCCCCccccccCCCCCCCCCcEeeccceEEEEcCCCCeEEEEeccCCcc
Q 017197          185 SHIVVYARGVWRIKGIIQVSRSIGDVYLKKPDFYRDPVFQQFGNPIPLKRPAMTAEPSILIRKLRPQDLFLIFASDGLWE  264 (375)
Q Consensus       185 ~~~~~~~~g~~r~~g~l~vtRalGd~~~k~~~~~~~~~~~~~~~~~~~~~~~v~~~P~i~~~~l~~~D~~LvLaSDGlwd  264 (375)
                       .. . ..+....++.+.+||+||+...                          .+|++..+++.++|. ||||||||||
T Consensus       141 -~i-~-~~~~~~~~~~~~~tralG~~~~--------------------------~~~~~~~~~l~~gd~-lll~SDGl~d  190 (234)
T 2jfr_A          141 -EI-T-RHEARWHPQRHLLTRALGIGPH--------------------------IGPDVFGIDCGPGDR-LLISSDGLFA  190 (234)
T ss_dssp             -SS-C-HHHHTTCTTTTCBSCCBSSSSC--------------------------CCCEEEECCCCTTCE-EEEECGGGGT
T ss_pred             -CC-C-HHHHhcCcccceeeecCcCCCC--------------------------ceeEEEEEecCCCCE-EEEECCCCcc
Confidence             00 0 0001122344579999998532                          688999999999995 5689999999


Q ss_pred             CCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhHHHHhhhccCCCCCCCCeEEEEEEc
Q 017197          265 QLTDEAAVEIVCKNPRAGIAKRLVRAALQEAARKREVGYKEIKKLKRGIRRHFHDDITVIVIYL  328 (375)
Q Consensus       265 ~l~~~ei~~iv~~~~~~~~a~~Lv~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~DNiTvIvv~l  328 (375)
                      +++++++.+++...+++.++..|++.|+.                     +++.||+|+||+++
T Consensus       191 ~~~~~~i~~~~~~~~~~~~a~~l~~~a~~---------------------~g~~DniTvivv~~  233 (234)
T 2jfr_A          191 AADEALIVDAATSPDPQVAVRRLVEVAND---------------------AGGSDNTTVVVIDL  233 (234)
T ss_dssp             TSCHHHHHHHHTCSSHHHHHHHHHHHHHH---------------------TTCCSCEEEEEEEE
T ss_pred             ccCHHHHHHHHccCCHHHHHHHHHHHHHH---------------------cCCCCCeEEEEEEe
Confidence            99999999999333667788999999877                     34689999999987


No 18 
>3rnr_A Stage II sporulation E family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 2.00A {Thermanaerovibrio acidaminovorans}
Probab=100.00  E-value=2.2e-34  Score=261.72  Aligned_cols=200  Identities=23%  Similarity=0.249  Sum_probs=151.8

Q ss_pred             cCCCcEEEEEEcCCCchHHHHHHHHHHHHHHHHhh--HHHHHHHHHHHHHHHHHHHHHhCCCCCCcccccceEEEEEEe-
Q 017197           53 TSPSATYVGVYDGHGGPEASRFVNKHLFPYLHRLS--AEVIKKAFHATEEEFLRLVKRVLPVRPQIASVGSCCLVGAIS-  129 (375)
Q Consensus        53 ~~~~~~l~gV~DG~GG~~aa~~a~~~l~~~l~~~~--~~~l~~a~~~~~~~l~~~~~~~~~~~~~~~~~GtT~~v~~i~-  129 (375)
                      ..++..+|+|||||||+.+++++++.+.+.|.+..  ...+.+++..+++.+.+....    .+....+|||++++++. 
T Consensus         6 ~~~~~~l~~VaDG~GG~~~g~~AS~~~~~~l~~~~~~~~~~~~~~~~an~~l~~~~~~----~~~~~~~GtT~~~~~i~~   81 (211)
T 3rnr_A            6 TGGDKAYCVVVDGMGGMIRGDEAAQRALSASVGVLDAGGSPLDAVLAAQAAVHRWASQ----GGILGRTGATMAVAAVNL   81 (211)
T ss_dssp             EETTEEEEEEEEECTTSTTHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHH----TTCTTSCCEEEEEEEEET
T ss_pred             ECCCccEEEEEeCCcCcHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhh----ccCCCCcchhheeeeeee
Confidence            45678999999999999888888888887776521  123468889999888887653    23445689999999999 


Q ss_pred             -CCEEEEEEcCCceeEEeeeeCCCCCceeEEEEccCCCCCCCHHHHHHHHhhCCCCCceEEeecCeeeecCccccccccC
Q 017197          130 -NDVLYVANLGDSRAVLGRRVSDDSKVKVAAERLSTDHNVGVEEVRKEVEALHPDDSHIVVYARGVWRIKGIIQVSRSIG  208 (375)
Q Consensus       130 -~~~l~vanvGDSr~~l~r~~~~~~~~~~~~~~LT~dH~~~~~~e~~ri~~~~p~~~~~~~~~~g~~r~~g~l~vtRalG  208 (375)
                       ++++|++|+||||+|++|++        ++.+||+||++.++.++.+. .  |            ...+....+||++|
T Consensus        82 ~~~~~~~anvGDSr~yl~r~g--------~~~~lt~dh~~~~~~~~~g~-~--~------------~~~~~~~~ltralG  138 (211)
T 3rnr_A           82 RDGTLEWASVGDCRVYLFKGG--------RLSRLSLDHNVSSEMVLLGR-G--P------------VPGPAGEMITSFIG  138 (211)
T ss_dssp             TTTEEEEEEESSCEEEEEETT--------EEEECCCCCBHHHHHHHTTS-C--C------------CCSHHHHCBSCCBT
T ss_pred             CCCEEEEEEEccCeEEEEeCC--------EEEEECCCcHHHHHHHHcCC-C--h------------hhCCCccEEecccC
Confidence             99999999999999999998        89999999998766544322 1  1            12223346899999


Q ss_pred             cccccCCCCCCCccccccCCCCCCCCCcEeeccce--EEEEcCCCCeEEEEeccCCccCCCHHHHHHHHHcCCcchHHHH
Q 017197          209 DVYLKKPDFYRDPVFQQFGNPIPLKRPAMTAEPSI--LIRKLRPQDLFLIFASDGLWEQLTDEAAVEIVCKNPRAGIAKR  286 (375)
Q Consensus       209 d~~~k~~~~~~~~~~~~~~~~~~~~~~~v~~~P~i--~~~~l~~~D~~LvLaSDGlwd~l~~~ei~~iv~~~~~~~~a~~  286 (375)
                      ....                          .+|++  ..++++++|.|| |||||||++++++++.+++.....   +..
T Consensus       139 ~~~~--------------------------~~~~~~~~~~~l~~gd~ll-L~SDGl~d~~~~~~i~~~l~~~~~---a~~  188 (211)
T 3rnr_A          139 IENL--------------------------TEISTSEAPLPLEAGEGVL-VVSDGVYRSLHEDRIAMALSRGSD---ARG  188 (211)
T ss_dssp             CSSC--------------------------CCCEECSSCEECCTTCEEE-EEEC-----CCTTEEEEEECTTSC---HHH
T ss_pred             CCCC--------------------------cceeEecceecCCCCCEEE-EEcCCCCCCcCHHHHHHHHhcCCh---HHH
Confidence            8644                          47788  789999999655 799999999999999998876543   889


Q ss_pred             HHHHHHHHHHHhhhhhhHHHHhhhccCCCCCCCCeEEEEEEc
Q 017197          287 LVRAALQEAARKREVGYKEIKKLKRGIRRHFHDDITVIVIYL  328 (375)
Q Consensus       287 Lv~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~DNiTvIvv~l  328 (375)
                      |++.|+..+                   +.+.||+|+|||+|
T Consensus       189 L~~~a~~~g-------------------~~~~DNiTvivv~L  211 (211)
T 3rnr_A          189 ILQEVEAQG-------------------RPYQDNATLALVIL  211 (211)
T ss_dssp             HHHHHHHSC-------------------TTSCSSCEEEEEEC
T ss_pred             HHHHHHHcC-------------------CCCCCceEEEEEeC
Confidence            998887732                   11689999999986


No 19 
>3t91_A Stage II sporulation protein E; SPOIIE, phosphatase, manganese binding, PP2C PH domain; HET: GL0 MAN; 2.64A {Bacillus subtilis} PDB: 3t9q_A*
Probab=99.81  E-value=1.3e-19  Score=167.00  Aligned_cols=193  Identities=17%  Similarity=0.221  Sum_probs=125.0

Q ss_pred             cCCcccCCceeeec-CCCcEEEEEEcCCCchHHHHHHHHHHHHHHHHhhH--HHHHHHHHHHHHHHHHHHHHhCCCCCCc
Q 017197           40 QANSCLEDQSQVFT-SPSATYVGVYDGHGGPEASRFVNKHLFPYLHRLSA--EVIKKAFHATEEEFLRLVKRVLPVRPQI  116 (375)
Q Consensus        40 ~~r~~~eD~~~~~~-~~~~~l~gV~DG~GG~~aa~~a~~~l~~~l~~~~~--~~l~~a~~~~~~~l~~~~~~~~~~~~~~  116 (375)
                      .++..+.|.|.++. .++..+++|+||+|+...|.+++..+...|.....  ....+++..+++.+....         .
T Consensus        18 p~~~v~GD~y~~~~~~~~~~~~~vaDg~G~G~~aa~~s~~~~~~l~~~~~~~~~~~~~l~~~n~~l~~~~---------~   88 (242)
T 3t91_A           18 GGGLVSGDSYSMMELGARKYAAAISDGMGNGARAHFESNETIKLLEKILESGIDEKIAIKTINSILSLRT---------T   88 (242)
T ss_dssp             TSCSCCSCEEEEEEETTTEEEEEEECC-----CCSEEECHHHHHHHHHHHHTCCHHHHHHHHHHHHTTC-----------
T ss_pred             CccccCCcEEEEEEeCCCeEEEEEEeeCCCCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcC---------C
Confidence            34789999998875 44566799999999665554444444444433111  124455555555543321         1


Q ss_pred             ccccceEEEEEEe--CCEEEEEEcCCceeEEeeeeCCCCCceeEEEEccCCCCCCCHHHHHHHHhhCCCCCceEEeecCe
Q 017197          117 ASVGSCCLVGAIS--NDVLYVANLGDSRAVLGRRVSDDSKVKVAAERLSTDHNVGVEEVRKEVEALHPDDSHIVVYARGV  194 (375)
Q Consensus       117 ~~~GtT~~v~~i~--~~~l~vanvGDSr~~l~r~~~~~~~~~~~~~~LT~dH~~~~~~e~~ri~~~~p~~~~~~~~~~g~  194 (375)
                      ..+++|+++++++  +++++++|+||+++|++|++        ++.+++.++.                           
T Consensus        89 ~~~~~T~~~~~id~~~~~l~~~~aG~~~~~l~r~g--------~~~~l~~~~~---------------------------  133 (242)
T 3t91_A           89 DEIYSTLDLSIIDLQDASCKFLKVGSTPSFIKRGD--------QVMKVQASNL---------------------------  133 (242)
T ss_dssp             --CCCCEEEEEEETTTCEEEEEEESCCCEEEEETT--------EEEECCCC-----------------------------
T ss_pred             CCeEeEEEEEEEECCCCEEEEEcCCCCceEEEECC--------EEEEecCCCc---------------------------
Confidence            2467999998887  78999999999999999987        7888764332                           


Q ss_pred             eeecCccccccccCcccccCCCCCCCccccccCCCCCCCCCcEeeccceEEEEcCCCCeEEEEeccCCccCCC-----HH
Q 017197          195 WRIKGIIQVSRSIGDVYLKKPDFYRDPVFQQFGNPIPLKRPAMTAEPSILIRKLRPQDLFLIFASDGLWEQLT-----DE  269 (375)
Q Consensus       195 ~r~~g~l~vtRalGd~~~k~~~~~~~~~~~~~~~~~~~~~~~v~~~P~i~~~~l~~~D~~LvLaSDGlwd~l~-----~~  269 (375)
                                 .+|....                          .+++...+.+.+||.+| |||||||+.+.     ..
T Consensus       134 -----------~lG~~~~--------------------------~~~~~~~~~l~~GD~ll-l~SDGl~e~~~~~~~~~~  175 (242)
T 3t91_A          134 -----------PIGIINE--------------------------FDVEVVSEQLKAGDLLI-MMSDGIFEGPKHVENHDL  175 (242)
T ss_dssp             --------------CCCT--------------------------TCEEEEEEECCTTCEEE-EECHHHHTCSTTCSCHHH
T ss_pred             -----------eeEecCC--------------------------CcceEEEEEeCCCCEEE-EECCCcccCCCcccchHH
Confidence                       1221111                          23457778999999655 79999999998     56


Q ss_pred             HHHHHHHcC---CcchHHHHHHHHHHHHHHHhhhhhhHHHHhhhccCCCCCCCCeEEEEEEcCCCC
Q 017197          270 AAVEIVCKN---PRAGIAKRLVRAALQEAARKREVGYKEIKKLKRGIRRHFHDDITVIVIYLDHHQ  332 (375)
Q Consensus       270 ei~~iv~~~---~~~~~a~~Lv~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~DNiTvIvv~l~~~~  332 (375)
                      .+.+++...   +.++.+..|++.+....+                  +...||+|++++++....
T Consensus       176 ~~~~ll~~~~~~~~~~~~~~l~~~~~~~~~------------------~~~~DDiTvv~i~~~~~~  223 (242)
T 3t91_A          176 WMKRKMKGLKTNDPQEIADLLMEEVIRTRS------------------GQIEDDMTVVVVRIDHNT  223 (242)
T ss_dssp             HHHHHHHTCCCCCHHHHHHHHHHHHHHHTT------------------SCCCSCEEEEEEEEEECC
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHHcC------------------CCCCCceEEEEEEEecCC
Confidence            677777642   556677788877766432                  113799999999998765


No 20 
>3pu9_A Protein serine/threonine phosphatase; PSI-biology, MCSG, structural genomics; HET: MSE; 1.55A {Sphaerobacter thermophilus}
Probab=99.78  E-value=1.1e-17  Score=154.60  Aligned_cols=192  Identities=20%  Similarity=0.191  Sum_probs=136.4

Q ss_pred             CCcccCCceeeecCC-CcEEEEEEcCCCchHHHHHHHHHHHHHHHHhhH--HHHHHHHHHHHHHHHHHHHHhCCCCCCcc
Q 017197           41 ANSCLEDQSQVFTSP-SATYVGVYDGHGGPEASRFVNKHLFPYLHRLSA--EVIKKAFHATEEEFLRLVKRVLPVRPQIA  117 (375)
Q Consensus        41 ~r~~~eD~~~~~~~~-~~~l~gV~DG~GG~~aa~~a~~~l~~~l~~~~~--~~l~~a~~~~~~~l~~~~~~~~~~~~~~~  117 (375)
                      ++..+.|.|.++..+ +..+++|+||+|+...|..++..+...+.....  ....+++..+++.+....         ..
T Consensus        22 ~~~vgGD~y~~~~~~~~~~~~~vaD~~G~G~~aa~~s~~~~~~l~~~~~~~~~~~~~l~~~n~~l~~~~---------~~   92 (242)
T 3pu9_A           22 GTRESGDTVELVERPGGGFSAVLVDGQGSGAGAKRLSLLVAGAAVRLLNEGVRDGAAARAAHDFLYAMR---------DG   92 (242)
T ss_dssp             TCSSCSEEEEEEECTTSEEEEEEEEESSSHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHT---------TT
T ss_pred             ccccCCceEEEEEeCCCEEEEEEEecCCCCHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcc---------CC
Confidence            467888999888554 456699999999888777777776666654211  134566777776664321         12


Q ss_pred             cccceEEEEEEe--CCEEEEEEcCCceeEEeeeeCCCCCceeEEEEccCCCCCCCHHHHHHHHhhCCCCCceEEeecCee
Q 017197          118 SVGSCCLVGAIS--NDVLYVANLGDSRAVLGRRVSDDSKVKVAAERLSTDHNVGVEEVRKEVEALHPDDSHIVVYARGVW  195 (375)
Q Consensus       118 ~~GtT~~v~~i~--~~~l~vanvGDSr~~l~r~~~~~~~~~~~~~~LT~dH~~~~~~e~~ri~~~~p~~~~~~~~~~g~~  195 (375)
                      .+.+|+++++++  .++++++|+||+++|++|++        ++.+++.+|.+                           
T Consensus        93 ~~~~T~~~~~id~~~~~l~~~~aG~~~~~l~r~g--------~~~~l~~~~~~---------------------------  137 (242)
T 3pu9_A           93 KVSAALDILSVDLASRSVLVTRNSEVPMLLGRNG--------EFEQISESGGR---------------------------  137 (242)
T ss_dssp             CCCEEEEEEEEETTTTEEEEEEESCCCEEEEETT--------EEEEECCCCCC---------------------------
T ss_pred             CcEEEEEEEEEECCCCEEEEEeCCCCcEEEEECC--------EEEEeCCCCcc---------------------------
Confidence            357899888886  77999999999999999987        88888876532                           


Q ss_pred             eecCccccccccCcccccCCCCCCCccccccCCCCCCCCCcEeeccceEEEEcCCCCeEEEEeccCCccCCC-------H
Q 017197          196 RIKGIIQVSRSIGDVYLKKPDFYRDPVFQQFGNPIPLKRPAMTAEPSILIRKLRPQDLFLIFASDGLWEQLT-------D  268 (375)
Q Consensus       196 r~~g~l~vtRalGd~~~k~~~~~~~~~~~~~~~~~~~~~~~v~~~P~i~~~~l~~~D~~LvLaSDGlwd~l~-------~  268 (375)
                                 +|....                          .+++...+.|.+||.+| ||||||++...       .
T Consensus       138 -----------lG~~~~--------------------------~~~~~~~~~l~~Gd~ll-l~TDGl~e~~~~~~~~~g~  179 (242)
T 3pu9_A          138 -----------IGIYRH--------------------------TRPRVLEFPAEPGLTVI-LVSDGIIGAGGRRGQPLEF  179 (242)
T ss_dssp             -----------BSSCTT--------------------------CCCEEEEEECCTTCEEE-EECHHHHTTTTTTTCCCCH
T ss_pred             -----------ccccCC--------------------------CCceEEEEEeCCCCEEE-EECcCcccCCCCccccccH
Confidence                       232111                          24467789999999555 79999998764       4


Q ss_pred             HHHHHHHHc--CCcchHHHHHHHHHHHHHHHhhhhhhHHHHhhhccCCCCCCCCeEEEEEEcCCCC
Q 017197          269 EAAVEIVCK--NPRAGIAKRLVRAALQEAARKREVGYKEIKKLKRGIRRHFHDDITVIVIYLDHHQ  332 (375)
Q Consensus       269 ~ei~~iv~~--~~~~~~a~~Lv~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~DNiTvIvv~l~~~~  332 (375)
                      +++..++..  .++++.+..|++.+....+                  +...||+|++++++.+..
T Consensus       180 ~~l~~l~~~~~~~~~~~~~~l~~~~~~~~~------------------~~~~DDiTvlvv~~~~~~  227 (242)
T 3pu9_A          180 LATGGRVAGPETPAQAIADELLEAALVADD------------------GRAGDDMTVVVLRLRNVE  227 (242)
T ss_dssp             HHHHHHHCCTTCCHHHHHHHHHHHHHHHTT------------------TSCSSCEEEEEEEEEECC
T ss_pred             HHHHHHHhccCCCHHHHHHHHHHHHHHhcC------------------CCCCCCeEEEEEEEecCC
Confidence            777555532  2566778888888776442                  124799999999997655


No 21 
>3zt9_A Serine phosphatase; hydrolase, signal transduction, protein protein interaction,; HET: PEG; 1.75A {Moorella thermoacetica}
Probab=99.67  E-value=2.3e-15  Score=134.24  Aligned_cols=177  Identities=16%  Similarity=0.137  Sum_probs=124.0

Q ss_pred             CCcccCCceeeecCCCcEEEEEEcCCCchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhCCCCCCccccc
Q 017197           41 ANSCLEDQSQVFTSPSATYVGVYDGHGGPEASRFVNKHLFPYLHRLSAEVIKKAFHATEEEFLRLVKRVLPVRPQIASVG  120 (375)
Q Consensus        41 ~r~~~eD~~~~~~~~~~~l~gV~DG~GG~~aa~~a~~~l~~~l~~~~~~~l~~a~~~~~~~l~~~~~~~~~~~~~~~~~G  120 (375)
                      +...+.|.|.+...++..+++|+||+|....|..++..+...|.........+.+..+++.+..             ..|
T Consensus        15 ~~~v~GD~y~~~~~~~~~~~~v~Dv~GhG~~Aa~~s~~~~~~l~~~~~~~p~~il~~ln~~l~~-------------~~~   81 (193)
T 3zt9_A           15 GEIACGDACLVKRVEGVIFLAVGDGIGHGPEAARAAEIAIASMESSMNTGLVNIFQLCHRELRG-------------TRG   81 (193)
T ss_dssp             TCSSCSEEEEEEEETTEEEEEEEEESSSHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHTT-------------SSC
T ss_pred             CCCCCCCeEEEEEeCCEEEEEEEeCCCCCHHHHHHHHHHHHHHHHcccCCHHHHHHHHHHHHhc-------------cCc
Confidence            4778899998887778899999999996666666677777776552222334445555554431             136


Q ss_pred             ceEEEEEEe--CCEEEEEEcCCceeEEeeeeCCCCCceeEEEEccCCCCCCCHHHHHHHHhhCCCCCceEEeecCeeeec
Q 017197          121 SCCLVGAIS--NDVLYVANLGDSRAVLGRRVSDDSKVKVAAERLSTDHNVGVEEVRKEVEALHPDDSHIVVYARGVWRIK  198 (375)
Q Consensus       121 tT~~v~~i~--~~~l~vanvGDSr~~l~r~~~~~~~~~~~~~~LT~dH~~~~~~e~~ri~~~~p~~~~~~~~~~g~~r~~  198 (375)
                      +|++++.++  .+++.++|+|+++.|++|.+        ....+...+                                
T Consensus        82 ~t~~~~~id~~~~~l~~~~aGh~~~~l~~~~--------~~~~l~~~~--------------------------------  121 (193)
T 3zt9_A           82 AVAALCRVDRRQGLWQAAIVGNIHVKILSAK--------GIITPLATP--------------------------------  121 (193)
T ss_dssp             EEEEEEEEETTTTEEEEEEESSCEEEEEETT--------EEECCCCBC--------------------------------
T ss_pred             eEEEEEEEECCCCEEEEEecCCceEEEEcCC--------cEEEecCCC--------------------------------
Confidence            788888887  77999999999999999987        554433111                                


Q ss_pred             CccccccccCcccccCCCCCCCccccccCCCCCCCCCcEeeccceEEEEcCCCCeEEEEeccCCccCCCHHHHHHHHHcC
Q 017197          199 GIIQVSRSIGDVYLKKPDFYRDPVFQQFGNPIPLKRPAMTAEPSILIRKLRPQDLFLIFASDGLWEQLTDEAAVEIVCKN  278 (375)
Q Consensus       199 g~l~vtRalGd~~~k~~~~~~~~~~~~~~~~~~~~~~~v~~~P~i~~~~l~~~D~~LvLaSDGlwd~l~~~ei~~iv~~~  278 (375)
                            ..+|....                          .+++...+++.++|.++ |+||||++.+..+++..++ ..
T Consensus       122 ------g~lG~~~~--------------------------~~~~~~~~~l~~gd~l~-l~sDGl~e~~~~~~~~~~~-~~  167 (193)
T 3zt9_A          122 ------GILGYNYP--------------------------HQLLIAKGSYQEGDLFL-IHSDGIQEGAVPLALLANY-RL  167 (193)
T ss_dssp             ------CBBTTBCC--------------------------SSCCCEEEECCTTCEEE-EECTTSCTTCSCGGGGGCT-TS
T ss_pred             ------CceeccCC--------------------------ccceeEEeccCCCCEEE-EECCCCCCccChhhhhchh-cC
Confidence                  01221100                          13456788999999555 7999999999999887765 34


Q ss_pred             CcchHHHHHHHHHHHHHHHhhhhhhHHHHhhhccCCCCCCCCeEEEEEE
Q 017197          279 PRAGIAKRLVRAALQEAARKREVGYKEIKKLKRGIRRHFHDDITVIVIY  327 (375)
Q Consensus       279 ~~~~~a~~Lv~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~DNiTvIvv~  327 (375)
                      ++++.|..|++.+.                       +..||+|++|++
T Consensus       168 ~~~~~a~~l~~~~~-----------------------~~~Dd~tvlv~r  193 (193)
T 3zt9_A          168 TAEELVRLIGEKYG-----------------------RRDDDVAVIVAR  193 (193)
T ss_dssp             CHHHHHHHHHHHHC-----------------------CTTSCEEEEEEC
T ss_pred             CHHHHHHHHHHHhC-----------------------cCCCCeEEEEEC
Confidence            66777888887751                       148999999984


No 22 
>3f79_A Probable two-component response regulator; adaptor, signaling protein; 2.80A {Pseudomonas aeruginosa} PDB: 3es2_A
Probab=99.62  E-value=5.2e-15  Score=137.29  Aligned_cols=191  Identities=19%  Similarity=0.111  Sum_probs=118.4

Q ss_pred             eeeEEecCCcccCCceeee-cCCCcEEEEEEcCCCchHHHHHHHHHHHHHHHHh----------hHHHHHHHHHHHHHHH
Q 017197           34 YSIAVVQANSCLEDQSQVF-TSPSATYVGVYDGHGGPEASRFVNKHLFPYLHRL----------SAEVIKKAFHATEEEF  102 (375)
Q Consensus        34 ~~~~~~~~r~~~eD~~~~~-~~~~~~l~gV~DG~GG~~aa~~a~~~l~~~l~~~----------~~~~l~~a~~~~~~~l  102 (375)
                      +.......+...-|.|.++ ..++..+++|+||+|+...|.+++..+...+...          ......+.+..+++.+
T Consensus        40 ~~~~~~p~~~vgGD~yd~~~~~~~~~~~~vaD~~GhG~~aa~~s~~~~~~~~~~~~~~~~~~~~~~~~p~~~l~~ln~~l  119 (255)
T 3f79_A           40 FSHRIIPSLYLSGDFVDYFRVDERRVAFYLADVSGHGASSAFVTVLLKFMTTRLLYESRRNGTLPEFKPSEVLAHINRGL  119 (255)
T ss_dssp             EEEEEECSSSSCSEEEEEEEETTTEEEEEEEEESSCSHHHHHHHHHHHHHHHHHHHHHTTCCC----CHHHHHHHHHHHH
T ss_pred             EEEEEeEhhhcCceEEeEEEeCCCEEEEEEEEecCCCHHHHHHHHHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHH
Confidence            3444555688889998666 4556788999999996666666666665555432          1223445555665555


Q ss_pred             HHHHHHhCCCCCCcccccceEEEEEEe--CCEEEEEEcCCc-eeEEeeeeCCCCCceeEEEEccCCCCCCCHHHHHHHHh
Q 017197          103 LRLVKRVLPVRPQIASVGSCCLVGAIS--NDVLYVANLGDS-RAVLGRRVSDDSKVKVAAERLSTDHNVGVEEVRKEVEA  179 (375)
Q Consensus       103 ~~~~~~~~~~~~~~~~~GtT~~v~~i~--~~~l~vanvGDS-r~~l~r~~~~~~~~~~~~~~LT~dH~~~~~~e~~ri~~  179 (375)
                      .+.          ...+++|+++++++  .++++++|+|++ +.|+++++        ++..++.+|.+           
T Consensus       120 ~~~----------~~~~~~T~~~~~id~~~~~l~~~~aGh~p~~~l~~~g--------~~~~l~~~~~~-----------  170 (255)
T 3f79_A          120 INT----------KLGKHVTMLGGVIDLEKNSLTYSIGGHLPLPVLFVEG--------QAGYLEGRGLP-----------  170 (255)
T ss_dssp             BTT----------BSSCCEEEEEEEEETTTTEEEEEECSCSCCCEEEC----------CEEECCC---------------
T ss_pred             Hhc----------CCCCEEEEEEEEEECCCCEEEEEeCCCCCceEEEeCC--------eEEEeCCCCce-----------
Confidence            421          23578999999995  789999999994 58998877        78888765532           


Q ss_pred             hCCCCCceEEeecCeeeecCccccccccCcccccCCCCCCCccccccCCCCCCCCCcEeeccceEEEEcCCCCeEEEEec
Q 017197          180 LHPDDSHIVVYARGVWRIKGIIQVSRSIGDVYLKKPDFYRDPVFQQFGNPIPLKRPAMTAEPSILIRKLRPQDLFLIFAS  259 (375)
Q Consensus       180 ~~p~~~~~~~~~~g~~r~~g~l~vtRalGd~~~k~~~~~~~~~~~~~~~~~~~~~~~v~~~P~i~~~~l~~~D~~LvLaS  259 (375)
                                                 +|....                          .+++...+.+.+||.++ |||
T Consensus       171 ---------------------------lG~~~~--------------------------~~~~~~~~~l~~gd~ll-l~T  196 (255)
T 3f79_A          171 ---------------------------VGLFDD--------------------------ATYDDRVMELPPSFSLS-LFS  196 (255)
T ss_dssp             ----------------------------CCSSC--------------------------CCCCC---BCCSSEEEE-EEC
T ss_pred             ---------------------------EEEcCC--------------------------CceEEEEEEECCCCEEE-EEC
Confidence                                       221110                          23356778899999555 799


Q ss_pred             cCCccCCCHHH-------HHHHHHcC--CcchHHHHHHHHHHHHHHHhhhhhhHHHHhhhccCCCCCCCCeEEEEEEcC
Q 017197          260 DGLWEQLTDEA-------AVEIVCKN--PRAGIAKRLVRAALQEAARKREVGYKEIKKLKRGIRRHFHDDITVIVIYLD  329 (375)
Q Consensus       260 DGlwd~l~~~e-------i~~iv~~~--~~~~~a~~Lv~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~DNiTvIvv~l~  329 (375)
                      |||++.+..++       +.+++...  +.+..+..|. .+.                     .++..||||+++++..
T Consensus       197 DGl~e~~~~~~~~~g~~~l~~~l~~~~~~~~~~~~~l~-~~~---------------------~~~~~DDiTvl~v~~~  253 (255)
T 3f79_A          197 DGILDVLPGATLKEKEASLPEQVAAAGGTLDGLRQVFG-LAN---------------------LAEMPDDIALLVLSRN  253 (255)
T ss_dssp             SCCCCCSCC---CCTTTSSHHHHHHHSCSSHHHHHHC---------------------------CCSSSCEEEEEEEEC
T ss_pred             CCcCcccCCCcchhhHHHHHHHHHhcCCCHHHHHHHHH-hcc---------------------CCCCCCCEEEEEEEec
Confidence            99999998877       77777642  2333333332 111                     1446899999999864


No 23 
>3ke6_A Protein RV1364C/MT1410; anti-sigma factor, anti-sigma factor antagonist, phosphatase serine kinase, ATPase, unknown function; 2.60A {Mycobacterium tuberculosis}
Probab=99.15  E-value=2.5e-09  Score=105.52  Aligned_cols=189  Identities=19%  Similarity=0.191  Sum_probs=119.0

Q ss_pred             cccCCceeeecCCCcEEEEEEcCCC-chHHHHHHHHHHHHHHHHhhH--HHHHHHHHHHHHHHHHHHHHhCCCCCCcccc
Q 017197           43 SCLEDQSQVFTSPSATYVGVYDGHG-GPEASRFVNKHLFPYLHRLSA--EVIKKAFHATEEEFLRLVKRVLPVRPQIASV  119 (375)
Q Consensus        43 ~~~eD~~~~~~~~~~~l~gV~DG~G-G~~aa~~a~~~l~~~l~~~~~--~~l~~a~~~~~~~l~~~~~~~~~~~~~~~~~  119 (375)
                      ...-|.|.++..++..+++|+|++| |-.+| +++..+...|.....  ....+.+..+++ +..   .      ....+
T Consensus        50 ~vgGD~y~~~~~~~~~~~~v~Dv~GhGv~AA-~~~~~~~~~l~~~~~~~~~p~~il~~ln~-~~~---~------~~~~~  118 (399)
T 3ke6_A           50 AAGGDWFDALALGDRLVLVVGDVVGHGVEAA-AVMSQLRTALRMQISAGYTVVEALEAVDR-FHK---Q------VPGSK  118 (399)
T ss_dssp             SCCSEEEEEEECSSEEEEEEEECSSCSHHHH-HHHHHHHHHHHHHHHTTCCHHHHHHHHHH-HGG---G------STTCT
T ss_pred             CCCCceEEEEEECCEEEEEEEEecCCCHHHH-HHHHHHHHHHHHHHhcCCCHHHHHHHHHH-HHH---h------cCCCc
Confidence            6778999888666689999999999 44444 444444444443111  122334444443 211   1      11246


Q ss_pred             cceEEEEEEe--CCEEEEEEcCCceeEEeeeeCCCCCceeEEEEccCCCCCCCHHHHHHHHhhCCCCCceEEeecCeeee
Q 017197          120 GSCCLVGAIS--NDVLYVANLGDSRAVLGRRVSDDSKVKVAAERLSTDHNVGVEEVRKEVEALHPDDSHIVVYARGVWRI  197 (375)
Q Consensus       120 GtT~~v~~i~--~~~l~vanvGDSr~~l~r~~~~~~~~~~~~~~LT~dH~~~~~~e~~ri~~~~p~~~~~~~~~~g~~r~  197 (375)
                      ++|+++++++  .+++.++|+|....|+++.+   +    .+..+..++.+                             
T Consensus       119 ~~t~~~~~id~~~~~l~~~~aGh~~~~l~~~~---g----~~~~l~~~~~~-----------------------------  162 (399)
T 3ke6_A          119 SATMCVGSLDFTSGEFQYCTAGHPPPLLVTAD---A----SARYVEPTGAG-----------------------------  162 (399)
T ss_dssp             TCEEEEEEEETTTCEEEEEEESSCCCEEECTT---S----CEEECCCCSCC-----------------------------
T ss_pred             EEEEEEEEEECCCCEEEEECCCCChhEEEeCC---C----CEEEeecCCCc-----------------------------
Confidence            7888888886  77999999999999999844   1    45555543321                             


Q ss_pred             cCccccccccCcccccCCCCCCCccccccCCCCCCCCCcEeeccceEEEEcCCCCeEEEEeccCCccCCCH------HHH
Q 017197          198 KGIIQVSRSIGDVYLKKPDFYRDPVFQQFGNPIPLKRPAMTAEPSILIRKLRPQDLFLIFASDGLWEQLTD------EAA  271 (375)
Q Consensus       198 ~g~l~vtRalGd~~~k~~~~~~~~~~~~~~~~~~~~~~~v~~~P~i~~~~l~~~D~~LvLaSDGlwd~l~~------~ei  271 (375)
                              .+|..                            ...+...+.|.+||.++ |+||||.+....      +.+
T Consensus       163 --------plG~~----------------------------~~~~~~~~~l~~Gd~l~-l~TDGl~e~~~~~~~~g~~~l  205 (399)
T 3ke6_A          163 --------PLGSG----------------------------TGFPVRSEVLNIGDAIL-FYTDGLIERPGRPLEASTAEF  205 (399)
T ss_dssp             --------CTTSS----------------------------CCCCCEEEECCTTCEEE-EECTTTTSCTTCCHHHHHHHH
T ss_pred             --------ceECC----------------------------CCceeEEEEECCCCEEE-EECCCcccCCCCCcchhHHHH
Confidence                    12210                            11245668899999555 799999998765      456


Q ss_pred             HHHHHcC----------CcchHHHHHHHHHHHHHHHhhhhhhHHHHhhhccCCCCCCCCeEEEEEEcCCC
Q 017197          272 VEIVCKN----------PRAGIAKRLVRAALQEAARKREVGYKEIKKLKRGIRRHFHDDITVIVIYLDHH  331 (375)
Q Consensus       272 ~~iv~~~----------~~~~~a~~Lv~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~DNiTvIvv~l~~~  331 (375)
                      .+++...          ++...+.++++.++......                .+..||+|++++++...
T Consensus       206 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~----------------~~~~DDitvl~vr~~~~  259 (399)
T 3ke6_A          206 ADLAASIASGSGGFVLDAPARPIDRLCSDTLELLLRS----------------TGYNDDVTLLAMQRRAP  259 (399)
T ss_dssp             HHHHHHHTC----------CCHHHHHHHHHHHHHHHT----------------TCCSSCEEEEEEEECCC
T ss_pred             HHHHHHhhcccccccccChhhHHHHHHHHHHHHhccC----------------CCCCCceEEEEEEeeCC
Confidence            6666541          23456777777776643210                22489999999999874


No 24 
>3eq2_A Probable two-component response regulator; adaptor sigmas, signaling protein; 3.40A {Pseudomonas aeruginosa} PDB: 3f7a_A
Probab=98.36  E-value=5e-06  Score=81.18  Aligned_cols=101  Identities=15%  Similarity=0.028  Sum_probs=57.7

Q ss_pred             EecCCcccCCceeeec-CCCcEEEEEEcCCC-chHHHHHHHHHHHHHHHHhhH----------HHHHHHHHHHHHHHHHH
Q 017197           38 VVQANSCLEDQSQVFT-SPSATYVGVYDGHG-GPEASRFVNKHLFPYLHRLSA----------EVIKKAFHATEEEFLRL  105 (375)
Q Consensus        38 ~~~~r~~~eD~~~~~~-~~~~~l~gV~DG~G-G~~aa~~a~~~l~~~l~~~~~----------~~l~~a~~~~~~~l~~~  105 (375)
                      ........-|.|.++. .++..+++|+|+.| |-.||-. +-.+...+.....          ....+.+..+++.+.+.
T Consensus       183 ~~p~~~vgGD~yd~~~~~~~~~~~~i~Dv~GhGv~aa~~-~~~~~~~~~~~~~~~~~~~~~~~~~p~~~l~~ln~~l~~~  261 (394)
T 3eq2_A          183 IIPSLYLSGDFVDYFRVDERRVAFYLADVSGHGASSAFV-TVLLKFMTTRLLYESRRNGTLPEFKPSEVLAHINRGLINT  261 (394)
T ss_dssp             EC-----CCCEEECCEETTTEEEEEEEEESSCSTTTHHH-HHHHHHHHHHHHHHSCSSCSSSSCCHHHHHHHHHHHHHHT
T ss_pred             eccchhcCccEEeEEEeCCCcEEEEEEECCCCChHHHHH-HHHHHHHHHHHHHhhhccCCcccCCHHHHHHHHHHHHhcc
Confidence            3344667789886664 55568899999888 5544433 2222222222111          12445566666665431


Q ss_pred             HHHhCCCCCCcccccceEEEEEEe--CCEEEEEEcCCce-eEEeeee
Q 017197          106 VKRVLPVRPQIASVGSCCLVGAIS--NDVLYVANLGDSR-AVLGRRV  149 (375)
Q Consensus       106 ~~~~~~~~~~~~~~GtT~~v~~i~--~~~l~vanvGDSr-~~l~r~~  149 (375)
                                ......|+++++++  .+++.++|.|-.. .++.+++
T Consensus       262 ----------~~~~~~t~~~~~~d~~~~~l~~~~aGh~p~~~~~~~g  298 (394)
T 3eq2_A          262 ----------KLGKHVTMLGGVIDLEKNSLTYSIGGHLPLPVLFVEG  298 (394)
T ss_dssp             ----------TCCCCEEEEEEEEETTTTEEEEEECSSSCCCEEEETT
T ss_pred             ----------CcCcEEEEEEEEEECCCCEEEEEcCCCCCCcEEecCC
Confidence                      12346788888886  7899999999855 5666655


No 25 
>3out_A Glutamate racemase; structural genomics, center for structural genomics of infec diseases, csgid, MURI, cell envelope; HET: MSE DGL; 1.65A {Francisella tularensis subsp}
Probab=25.13  E-value=32  Score=31.14  Aligned_cols=24  Identities=29%  Similarity=0.375  Sum_probs=20.5

Q ss_pred             EEEEEc-CCCchHHHHHHHHHHHHH
Q 017197           59 YVGVYD-GHGGPEASRFVNKHLFPY   82 (375)
Q Consensus        59 l~gV~D-G~GG~~aa~~a~~~l~~~   82 (375)
                      =.|||| |+||-.+++.+.+.++..
T Consensus         9 pIgvfDSGvGGLtv~~~i~~~lp~~   33 (268)
T 3out_A            9 PIGVFDSGIGGLTIVKNLMSILPNE   33 (268)
T ss_dssp             CEEEEESSSTTHHHHHHHHHHCTTC
T ss_pred             cEEEEECCCChHHHHHHHHHHCCCC
Confidence            489999 999999999988887654


Done!