BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 017198
(375 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4DNW|A Chain A, Crystal Structure Of Uvb-Resistance Protein Uvr8
pdb|4DNW|B Chain B, Crystal Structure Of Uvb-Resistance Protein Uvr8
Length = 374
Score = 157 bits (398), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 112/350 (32%), Positives = 174/350 (49%), Gaps = 10/350 (2%)
Query: 3 ITTGRYHTL-LISNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSASENH 61
I+ G H++ L+S V S G G LGHG + S T+++ +V V+ +H
Sbjct: 9 ISAGASHSVALLSGDIVCSWGRGEDGQLGHG-DAEDRPSPTQLSALDGHQIVSVTCGADH 67
Query: 62 AAFVLQSG-QVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGLNFTGFLTI 120
QSG +V++ G GH +++ +F P ++AL G+ KQ+ G + +T+
Sbjct: 68 TVAYSQSGMEVYSWGWGDFGRLGHGNSS-DLFTPLPIKALHGIRIKQIACGDSHCLAVTM 126
Query: 121 RGHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGPSYMLAVTGNGVVYSF 180
G V + G N +GQLG GDT D P+ I E + + +AAG + AVT +G +Y +
Sbjct: 127 EGEVQSWGRNQNGQLGLGDTEDSLVPQKIQAFEGI-RIKMVAAGAEHTAAVTEDGDLYGW 185
Query: 181 GSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGDEHVVALDSSGYVYTWGKGYCG 240
G G LG G++ D L P + + G + V+ G H +++ SG +YT+G G
Sbjct: 186 GWGRYGNLGLGDRTDRLVPERVTS--TGGEKMSMVACGWRHTISVSYSGALYTYGWSKYG 243
Query: 241 ALGHGDEIDKTLPEPLSSLKSHLAVQVCARKRKTFVLVDTGSVYGFGWMGFGSLGFPDRG 300
LGHGD D +P L +L + Q+ R T L G +YG+GW FG +G +
Sbjct: 244 QLGHGDLEDHLIPHKLEALSNSFISQISGGWRHTMALTSDGKLYGWGWNKFGQVGVGNNL 303
Query: 301 VSDKVLRPRILDSLRAHHVSQISTGLYHTVVVTDRGRLFGFGDNERAQLG 350
++ R D + V Q+S G HT+ VT+R +F +G QLG
Sbjct: 304 DQCSPVQVRFPDDQK---VVQVSCGWRHTLAVTERNNVFAWGRGTNGQLG 350
Score = 127 bits (320), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 81/257 (31%), Positives = 134/257 (52%), Gaps = 7/257 (2%)
Query: 108 VTAGLNFTGFLTIRGHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGPSY 167
++AG + + L V + G GQLGHGD DRP+P ++ L+ +V + G +
Sbjct: 9 ISAGASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGH-QIVSVTCGADH 67
Query: 168 MLAVTGNGV-VYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGDEHVVALD 226
+A + +G+ VYS+G G LGHG D P I+ GI + +++ GD H +A+
Sbjct: 68 TVAYSQSGMEVYSWGWGDFGRLGHGNSSDLFTPLPIKALH--GIRIKQIACGDSHCLAVT 125
Query: 227 SSGYVYTWGKGYCGALGHGDEIDKTLPEPLSSLKSHLAVQVCARKRKTFVLVDTGSVYGF 286
G V +WG+ G LG GD D +P+ + + + V A T + + G +YG+
Sbjct: 126 MEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQAFEGIRIKMVAAGAEHTAAVTEDGDLYGW 185
Query: 287 GWMGFGSLGFPDRGVSDKVLRPRILDSLRAHHVSQISTGLYHTVVVTDRGRLFGFGDNER 346
GW +G+LG DR +D+++ P + S +S ++ G HT+ V+ G L+ +G ++
Sbjct: 186 GWGRYGNLGLGDR--TDRLV-PERVTSTGGEKMSMVACGWRHTISVSYSGALYTYGWSKY 242
Query: 347 AQLGHDTLRGCLEPTEI 363
QLGH L L P ++
Sbjct: 243 GQLGHGDLEDHLIPHKL 259
Score = 92.4 bits (228), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 75/260 (28%), Positives = 118/260 (45%), Gaps = 8/260 (3%)
Query: 2 QITTGRYHTLLIS-NSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSASEN 60
QI G H L ++ V S G + G LG G +T + +I + V+A
Sbjct: 113 QIACGDSHCLAVTMEGEVQSWGRNQNGQLGLG-DTEDSLVPQKIQAFEGIRIKMVAAGAE 171
Query: 61 HAAFVLQSGQVFTCGDNSSFCCGHRD-TNRPIFRPRLVEALKGVPCKQVTAGLNFTGFLT 119
H A V + G ++ G G D T+R + P V + G V G T ++
Sbjct: 172 HTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLV--PERVTSTGGEKMSMVACGWRHTISVS 229
Query: 120 IRGHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGPSYMLAVTGNGVVYS 179
G ++T G + +GQLGHGD D P + L + QI+ G + +A+T +G +Y
Sbjct: 230 YSGALYTYGWSKYGQLGHGDLEDHLIPHKLEALSN-SFISQISGGWRHTMALTSDGKLYG 288
Query: 180 FGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGDEHVVALDSSGYVYTWGKGYC 239
+G +G G D+ P +Q VV+VS G H +A+ V+ WG+G
Sbjct: 289 WGWNKFGQVGVGNNLDQCSP--VQVRFPDDQKVVQVSCGWRHTLAVTERNNVFAWGRGTN 346
Query: 240 GALGHGDEIDKTLPEPLSSL 259
G LG G+ +D+ P+ + +L
Sbjct: 347 GQLGIGESVDRNFPKIIEAL 366
Score = 84.0 bits (206), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 56/153 (36%), Positives = 74/153 (48%), Gaps = 4/153 (2%)
Query: 212 VVRVSAGDEHVVALDSSGYVYTWGKGYCGALGHGDEIDKTLPEPLSSLKSHLAVQVCARK 271
V+ +SAG H VAL S V +WG+G G LGHGD D+ P LS+L H V V
Sbjct: 6 VLIISAGASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSVTCGA 65
Query: 272 RKTFVLVDTG-SVYGFGWMGFGSLGFPDRGVSDKVLRPRILDSLRAHHVSQISTGLYHTV 330
T +G VY +GW FG LG G S + P + +L + QI+ G H +
Sbjct: 66 DHTVAYSQSGMEVYSWGWGDFGRLG---HGNSSDLFTPLPIKALHGIRIKQIACGDSHCL 122
Query: 331 VVTDRGRLFGFGDNERAQLGHDTLRGCLEPTEI 363
VT G + +G N+ QLG L P +I
Sbjct: 123 AVTMEGEVQSWGRNQNGQLGLGDTEDSLVPQKI 155
Score = 75.1 bits (183), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 61/209 (29%), Positives = 96/209 (45%), Gaps = 6/209 (2%)
Query: 3 ITTGRYHTLLIS-NSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSASENH 61
+ G HT ++ + ++ G G LG G T + V R+ + V+ H
Sbjct: 166 VAAGAEHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVP-ERVTSTGGEKMSMVACGWRH 224
Query: 62 AAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGLNFTGFLTIR 121
V SG ++T G + GH D + P +EAL Q++ G T LT
Sbjct: 225 TISVSYSGALYTYGWSKYGQLGHGDLEDHLI-PHKLEALSNSFISQISGGWRHTMALTSD 283
Query: 122 GHVHTCGSNTHGQLGHGDTLDRPTPKSIA-PLEEVGSVVQIAAGPSYMLAVTGNGVVYSF 180
G ++ G N GQ+G G+ LD+ +P + P ++ VVQ++ G + LAVT V+++
Sbjct: 284 GKLYGWGWNKFGQVGVGNNLDQCSPVQVRFPDDQ--KVVQVSCGWRHTLAVTERNNVFAW 341
Query: 181 GSGSNFCLGHGEQHDELQPRAIQTFRRKG 209
G G+N LG GE D P+ I+ G
Sbjct: 342 GRGTNGQLGIGESVDRNFPKIIEALSVDG 370
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 47/162 (29%), Positives = 76/162 (46%), Gaps = 9/162 (5%)
Query: 3 ITTGRYHTLLISNS-SVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSASENH 61
+ G HT+ +S S ++++ G S G LGHG + ++ S + + Q+S H
Sbjct: 218 VACGWRHTISVSYSGALYTYGWSKYGQLGHGDLEDHLIPH-KLEALSNSFISQISGGWRH 276
Query: 62 AAFVLQSGQVFTCGDNSSFCCG---HRDTNRPIFRPRLVEALKGVPCKQVTAGLNFTGFL 118
+ G+++ G N G + D P+ + R + K V QV+ G T +
Sbjct: 277 TMALTSDGKLYGWGWNKFGQVGVGNNLDQCSPV-QVRFPDDQKVV---QVSCGWRHTLAV 332
Query: 119 TIRGHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQ 160
T R +V G T+GQLG G+++DR PK I L G+ Q
Sbjct: 333 TERNNVFAWGRGTNGQLGIGESVDRNFPKIIEALSVDGASGQ 374
>pdb|4D9S|A Chain A, Crystal Structure Of Arabidopsis Thaliana Uvr8 (Uv
Resistance Locus 8)
pdb|4D9S|B Chain B, Crystal Structure Of Arabidopsis Thaliana Uvr8 (Uv
Resistance Locus 8)
Length = 406
Score = 157 bits (397), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 112/350 (32%), Positives = 174/350 (49%), Gaps = 10/350 (2%)
Query: 3 ITTGRYHTL-LISNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSASENH 61
I+ G H++ L+S V S G G LGHG + S T+++ +V V+ +H
Sbjct: 21 ISAGASHSVALLSGDIVCSWGRGEDGQLGHG-DAEDRPSPTQLSALDGHQIVSVTCGADH 79
Query: 62 AAFVLQSG-QVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGLNFTGFLTI 120
QSG +V++ G GH +++ +F P ++AL G+ KQ+ G + +T+
Sbjct: 80 TVAYSQSGMEVYSWGWGDFGRLGHGNSS-DLFTPLPIKALHGIRIKQIACGDSHCLAVTM 138
Query: 121 RGHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGPSYMLAVTGNGVVYSF 180
G V + G N +GQLG GDT D P+ I E + + +AAG + AVT +G +Y +
Sbjct: 139 EGEVQSWGRNQNGQLGLGDTEDSLVPQKIQAFEGI-RIKMVAAGAEHTAAVTEDGDLYGW 197
Query: 181 GSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGDEHVVALDSSGYVYTWGKGYCG 240
G G LG G++ D L P + + G + V+ G H +++ SG +YT+G G
Sbjct: 198 GWGRYGNLGLGDRTDRLVPERVTS--TGGEKMSMVACGWRHTISVSYSGALYTYGWSKYG 255
Query: 241 ALGHGDEIDKTLPEPLSSLKSHLAVQVCARKRKTFVLVDTGSVYGFGWMGFGSLGFPDRG 300
LGHGD D +P L +L + Q+ R T L G +YG+GW FG +G +
Sbjct: 256 QLGHGDLEDHLIPHKLEALSNSFISQISGGWRHTMALTSDGKLYGWGWNKFGQVGVGNNL 315
Query: 301 VSDKVLRPRILDSLRAHHVSQISTGLYHTVVVTDRGRLFGFGDNERAQLG 350
++ R D + V Q+S G HT+ VT+R +F +G QLG
Sbjct: 316 DQCSPVQVRFPDDQK---VVQVSCGWRHTLAVTERNNVFAWGRGTNGQLG 362
Score = 127 bits (319), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 81/257 (31%), Positives = 134/257 (52%), Gaps = 7/257 (2%)
Query: 108 VTAGLNFTGFLTIRGHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGPSY 167
++AG + + L V + G GQLGHGD DRP+P ++ L+ +V + G +
Sbjct: 21 ISAGASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGH-QIVSVTCGADH 79
Query: 168 MLAVTGNGV-VYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGDEHVVALD 226
+A + +G+ VYS+G G LGHG D P I+ GI + +++ GD H +A+
Sbjct: 80 TVAYSQSGMEVYSWGWGDFGRLGHGNSSDLFTPLPIKALH--GIRIKQIACGDSHCLAVT 137
Query: 227 SSGYVYTWGKGYCGALGHGDEIDKTLPEPLSSLKSHLAVQVCARKRKTFVLVDTGSVYGF 286
G V +WG+ G LG GD D +P+ + + + V A T + + G +YG+
Sbjct: 138 MEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQAFEGIRIKMVAAGAEHTAAVTEDGDLYGW 197
Query: 287 GWMGFGSLGFPDRGVSDKVLRPRILDSLRAHHVSQISTGLYHTVVVTDRGRLFGFGDNER 346
GW +G+LG DR +D+++ R+ S +S ++ G HT+ V+ G L+ +G ++
Sbjct: 198 GWGRYGNLGLGDR--TDRLVPERVT-STGGEKMSMVACGWRHTISVSYSGALYTYGWSKY 254
Query: 347 AQLGHDTLRGCLEPTEI 363
QLGH L L P ++
Sbjct: 255 GQLGHGDLEDHLIPHKL 271
Score = 91.7 bits (226), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 75/260 (28%), Positives = 118/260 (45%), Gaps = 8/260 (3%)
Query: 2 QITTGRYHTLLIS-NSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSASEN 60
QI G H L ++ V S G + G LG G +T + +I + V+A
Sbjct: 125 QIACGDSHCLAVTMEGEVQSWGRNQNGQLGLG-DTEDSLVPQKIQAFEGIRIKMVAAGAE 183
Query: 61 HAAFVLQSGQVFTCGDNSSFCCGHRD-TNRPIFRPRLVEALKGVPCKQVTAGLNFTGFLT 119
H A V + G ++ G G D T+R + P V + G V G T ++
Sbjct: 184 HTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLV--PERVTSTGGEKMSMVACGWRHTISVS 241
Query: 120 IRGHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGPSYMLAVTGNGVVYS 179
G ++T G + +GQLGHGD D P + L + QI+ G + +A+T +G +Y
Sbjct: 242 YSGALYTYGWSKYGQLGHGDLEDHLIPHKLEALSN-SFISQISGGWRHTMALTSDGKLYG 300
Query: 180 FGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGDEHVVALDSSGYVYTWGKGYC 239
+G +G G D+ P +Q VV+VS G H +A+ V+ WG+G
Sbjct: 301 WGWNKFGQVGVGNNLDQCSP--VQVRFPDDQKVVQVSCGWRHTLAVTERNNVFAWGRGTN 358
Query: 240 GALGHGDEIDKTLPEPLSSL 259
G LG G+ +D+ P+ + +L
Sbjct: 359 GQLGIGESVDRNFPKIIEAL 378
Score = 84.0 bits (206), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 56/153 (36%), Positives = 74/153 (48%), Gaps = 4/153 (2%)
Query: 212 VVRVSAGDEHVVALDSSGYVYTWGKGYCGALGHGDEIDKTLPEPLSSLKSHLAVQVCARK 271
V+ +SAG H VAL S V +WG+G G LGHGD D+ P LS+L H V V
Sbjct: 18 VLIISAGASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSVTCGA 77
Query: 272 RKTFVLVDTG-SVYGFGWMGFGSLGFPDRGVSDKVLRPRILDSLRAHHVSQISTGLYHTV 330
T +G VY +GW FG LG G S + P + +L + QI+ G H +
Sbjct: 78 DHTVAYSQSGMEVYSWGWGDFGRLG---HGNSSDLFTPLPIKALHGIRIKQIACGDSHCL 134
Query: 331 VVTDRGRLFGFGDNERAQLGHDTLRGCLEPTEI 363
VT G + +G N+ QLG L P +I
Sbjct: 135 AVTMEGEVQSWGRNQNGQLGLGDTEDSLVPQKI 167
Score = 74.7 bits (182), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 60/208 (28%), Positives = 94/208 (45%), Gaps = 4/208 (1%)
Query: 3 ITTGRYHTLLIS-NSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSASENH 61
+ G HT ++ + ++ G G LG G T + V R+ + V+ H
Sbjct: 178 VAAGAEHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVP-ERVTSTGGEKMSMVACGWRH 236
Query: 62 AAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGLNFTGFLTIR 121
V SG ++T G + GH D + P +EAL Q++ G T LT
Sbjct: 237 TISVSYSGALYTYGWSKYGQLGHGDLEDHLI-PHKLEALSNSFISQISGGWRHTMALTSD 295
Query: 122 GHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGPSYMLAVTGNGVVYSFG 181
G ++ G N GQ+G G+ LD+ +P + + VVQ++ G + LAVT V+++G
Sbjct: 296 GKLYGWGWNKFGQVGVGNNLDQCSPVQVR-FPDDQKVVQVSCGWRHTLAVTERNNVFAWG 354
Query: 182 SGSNFCLGHGEQHDELQPRAIQTFRRKG 209
G+N LG GE D P+ I+ G
Sbjct: 355 RGTNGQLGIGESVDRNFPKIIEALSVDG 382
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 47/162 (29%), Positives = 76/162 (46%), Gaps = 9/162 (5%)
Query: 3 ITTGRYHTLLISNS-SVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSASENH 61
+ G HT+ +S S ++++ G S G LGHG + ++ S + + Q+S H
Sbjct: 230 VACGWRHTISVSYSGALYTYGWSKYGQLGHGDLEDHLIPH-KLEALSNSFISQISGGWRH 288
Query: 62 AAFVLQSGQVFTCGDNSSFCCG---HRDTNRPIFRPRLVEALKGVPCKQVTAGLNFTGFL 118
+ G+++ G N G + D P+ + R + K V QV+ G T +
Sbjct: 289 TMALTSDGKLYGWGWNKFGQVGVGNNLDQCSPV-QVRFPDDQKVV---QVSCGWRHTLAV 344
Query: 119 TIRGHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQ 160
T R +V G T+GQLG G+++DR PK I L G+ Q
Sbjct: 345 TERNNVFAWGRGTNGQLGIGESVDRNFPKIIEALSVDGASGQ 386
>pdb|4DNV|A Chain A, Crystal Structure Of The W285f Mutant Of Uvb-Resistance
Protein Uvr8
pdb|4DNV|B Chain B, Crystal Structure Of The W285f Mutant Of Uvb-Resistance
Protein Uvr8
pdb|4DNV|C Chain C, Crystal Structure Of The W285f Mutant Of Uvb-Resistance
Protein Uvr8
pdb|4DNV|D Chain D, Crystal Structure Of The W285f Mutant Of Uvb-Resistance
Protein Uvr8
Length = 370
Score = 157 bits (396), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 112/350 (32%), Positives = 174/350 (49%), Gaps = 10/350 (2%)
Query: 3 ITTGRYHTL-LISNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSASENH 61
I+ G H++ L+S V S G G LGHG + S T+++ +V V+ +H
Sbjct: 9 ISAGASHSVALLSGDIVCSWGRGEDGQLGHG-DAEDRPSPTQLSALDGHQIVSVTCGADH 67
Query: 62 AAFVLQSG-QVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGLNFTGFLTI 120
QSG +V++ G GH +++ +F P ++AL G+ KQ+ G + +T+
Sbjct: 68 TVAYSQSGMEVYSWGWGDFGRLGHGNSS-DLFTPLPIKALHGIRIKQIACGDSHCLAVTM 126
Query: 121 RGHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGPSYMLAVTGNGVVYSF 180
G V + G N +GQLG GDT D P+ I E + + +AAG + AVT +G +Y +
Sbjct: 127 EGEVQSWGRNQNGQLGLGDTEDSLVPQKIQAFEGI-RIKMVAAGAEHTAAVTEDGDLYGW 185
Query: 181 GSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGDEHVVALDSSGYVYTWGKGYCG 240
G G LG G++ D L P + + G + V+ G H +++ SG +YT+G G
Sbjct: 186 GWGRYGNLGLGDRTDRLVPERVTS--TGGEKMSMVACGWRHTISVSYSGALYTYGWSKYG 243
Query: 241 ALGHGDEIDKTLPEPLSSLKSHLAVQVCARKRKTFVLVDTGSVYGFGWMGFGSLGFPDRG 300
LGHGD D +P L +L + Q+ R T L G +YG+GW FG +G +
Sbjct: 244 QLGHGDLEDHLIPHKLEALSNSFISQISGGFRHTMALTSDGKLYGWGWNKFGQVGVGNNL 303
Query: 301 VSDKVLRPRILDSLRAHHVSQISTGLYHTVVVTDRGRLFGFGDNERAQLG 350
++ R D + V Q+S G HT+ VT+R +F +G QLG
Sbjct: 304 DQCSPVQVRFPDDQK---VVQVSCGWRHTLAVTERNNVFAWGRGTNGQLG 350
Score = 127 bits (319), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 81/257 (31%), Positives = 134/257 (52%), Gaps = 7/257 (2%)
Query: 108 VTAGLNFTGFLTIRGHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGPSY 167
++AG + + L V + G GQLGHGD DRP+P ++ L+ +V + G +
Sbjct: 9 ISAGASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGH-QIVSVTCGADH 67
Query: 168 MLAVTGNGV-VYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGDEHVVALD 226
+A + +G+ VYS+G G LGHG D P I+ GI + +++ GD H +A+
Sbjct: 68 TVAYSQSGMEVYSWGWGDFGRLGHGNSSDLFTPLPIKALH--GIRIKQIACGDSHCLAVT 125
Query: 227 SSGYVYTWGKGYCGALGHGDEIDKTLPEPLSSLKSHLAVQVCARKRKTFVLVDTGSVYGF 286
G V +WG+ G LG GD D +P+ + + + V A T + + G +YG+
Sbjct: 126 MEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQAFEGIRIKMVAAGAEHTAAVTEDGDLYGW 185
Query: 287 GWMGFGSLGFPDRGVSDKVLRPRILDSLRAHHVSQISTGLYHTVVVTDRGRLFGFGDNER 346
GW +G+LG DR +D+++ P + S +S ++ G HT+ V+ G L+ +G ++
Sbjct: 186 GWGRYGNLGLGDR--TDRLV-PERVTSTGGEKMSMVACGWRHTISVSYSGALYTYGWSKY 242
Query: 347 AQLGHDTLRGCLEPTEI 363
QLGH L L P ++
Sbjct: 243 GQLGHGDLEDHLIPHKL 259
Score = 91.7 bits (226), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 75/260 (28%), Positives = 118/260 (45%), Gaps = 8/260 (3%)
Query: 2 QITTGRYHTLLIS-NSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSASEN 60
QI G H L ++ V S G + G LG G +T + +I + V+A
Sbjct: 113 QIACGDSHCLAVTMEGEVQSWGRNQNGQLGLG-DTEDSLVPQKIQAFEGIRIKMVAAGAE 171
Query: 61 HAAFVLQSGQVFTCGDNSSFCCGHRD-TNRPIFRPRLVEALKGVPCKQVTAGLNFTGFLT 119
H A V + G ++ G G D T+R + P V + G V G T ++
Sbjct: 172 HTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLV--PERVTSTGGEKMSMVACGWRHTISVS 229
Query: 120 IRGHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGPSYMLAVTGNGVVYS 179
G ++T G + +GQLGHGD D P + L + QI+ G + +A+T +G +Y
Sbjct: 230 YSGALYTYGWSKYGQLGHGDLEDHLIPHKLEALSN-SFISQISGGFRHTMALTSDGKLYG 288
Query: 180 FGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGDEHVVALDSSGYVYTWGKGYC 239
+G +G G D+ P +Q VV+VS G H +A+ V+ WG+G
Sbjct: 289 WGWNKFGQVGVGNNLDQCSP--VQVRFPDDQKVVQVSCGWRHTLAVTERNNVFAWGRGTN 346
Query: 240 GALGHGDEIDKTLPEPLSSL 259
G LG G+ +D+ P+ + +L
Sbjct: 347 GQLGIGESVDRNFPKIIEAL 366
Score = 83.6 bits (205), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 56/153 (36%), Positives = 74/153 (48%), Gaps = 4/153 (2%)
Query: 212 VVRVSAGDEHVVALDSSGYVYTWGKGYCGALGHGDEIDKTLPEPLSSLKSHLAVQVCARK 271
V+ +SAG H VAL S V +WG+G G LGHGD D+ P LS+L H V V
Sbjct: 6 VLIISAGASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSVTCGA 65
Query: 272 RKTFVLVDTG-SVYGFGWMGFGSLGFPDRGVSDKVLRPRILDSLRAHHVSQISTGLYHTV 330
T +G VY +GW FG LG G S + P + +L + QI+ G H +
Sbjct: 66 DHTVAYSQSGMEVYSWGWGDFGRLG---HGNSSDLFTPLPIKALHGIRIKQIACGDSHCL 122
Query: 331 VVTDRGRLFGFGDNERAQLGHDTLRGCLEPTEI 363
VT G + +G N+ QLG L P +I
Sbjct: 123 AVTMEGEVQSWGRNQNGQLGLGDTEDSLVPQKI 155
Score = 75.5 bits (184), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 60/208 (28%), Positives = 94/208 (45%), Gaps = 4/208 (1%)
Query: 3 ITTGRYHTLLIS-NSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSASENH 61
+ G HT ++ + ++ G G LG G T + V R+ + V+ H
Sbjct: 166 VAAGAEHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVP-ERVTSTGGEKMSMVACGWRH 224
Query: 62 AAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGLNFTGFLTIR 121
V SG ++T G + GH D + P +EAL Q++ G T LT
Sbjct: 225 TISVSYSGALYTYGWSKYGQLGHGDLEDHLI-PHKLEALSNSFISQISGGFRHTMALTSD 283
Query: 122 GHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGPSYMLAVTGNGVVYSFG 181
G ++ G N GQ+G G+ LD+ +P + + VVQ++ G + LAVT V+++G
Sbjct: 284 GKLYGWGWNKFGQVGVGNNLDQCSPVQVR-FPDDQKVVQVSCGWRHTLAVTERNNVFAWG 342
Query: 182 SGSNFCLGHGEQHDELQPRAIQTFRRKG 209
G+N LG GE D P+ I+ G
Sbjct: 343 RGTNGQLGIGESVDRNFPKIIEALSVDG 370
>pdb|4DNU|A Chain A, Crystal Structure Of The W285a Mutant Of Uvb-Resistance
Protein Uvr8
Length = 372
Score = 154 bits (390), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 112/350 (32%), Positives = 172/350 (49%), Gaps = 10/350 (2%)
Query: 3 ITTGRYHTL-LISNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSASENH 61
I+ G H++ L+S V S G G LGHG + S T+++ +V V+ +H
Sbjct: 11 ISAGASHSVALLSGDIVCSWGRGEDGQLGHG-DAEDRPSPTQLSALDGHQIVSVTCGADH 69
Query: 62 AAFVLQSG-QVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGLNFTGFLTI 120
QSG +V++ G GH +++ +F P ++AL G+ KQ+ G + +T
Sbjct: 70 TVAYSQSGXEVYSWGWGDFGRLGHGNSS-DLFTPLPIKALHGIRIKQIACGDSHCLAVTX 128
Query: 121 RGHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGPSYMLAVTGNGVVYSF 180
G V + G N +GQLG GDT D P+ I E + + +AAG + AVT +G +Y +
Sbjct: 129 EGEVQSWGRNQNGQLGLGDTEDSLVPQKIQAFEGI-RIKXVAAGAEHTAAVTEDGDLYGW 187
Query: 181 GSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGDEHVVALDSSGYVYTWGKGYCG 240
G G LG G++ D L P + + G V+ G H +++ SG +YT+G G
Sbjct: 188 GWGRYGNLGLGDRTDRLVPERVTS--TGGEKXSXVACGWRHTISVSYSGALYTYGWSKYG 245
Query: 241 ALGHGDEIDKTLPEPLSSLKSHLAVQVCARKRKTFVLVDTGSVYGFGWMGFGSLGFPDRG 300
LGHGD D +P L +L + Q+ R T L G +YG+GW FG +G +
Sbjct: 246 QLGHGDLEDHLIPHKLEALSNSFISQISGGARHTXALTSDGKLYGWGWNKFGQVGVGNNL 305
Query: 301 VSDKVLRPRILDSLRAHHVSQISTGLYHTVVVTDRGRLFGFGDNERAQLG 350
++ R D + V Q+S G HT+ VT+R +F +G QLG
Sbjct: 306 DQCSPVQVRFPDDQK---VVQVSCGWRHTLAVTERNNVFAWGRGTNGQLG 352
Score = 125 bits (315), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 81/257 (31%), Positives = 132/257 (51%), Gaps = 7/257 (2%)
Query: 108 VTAGLNFTGFLTIRGHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGPSY 167
++AG + + L V + G GQLGHGD DRP+P ++ L+ +V + G +
Sbjct: 11 ISAGASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGH-QIVSVTCGADH 69
Query: 168 MLAVTGNGV-VYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGDEHVVALD 226
+A + +G VYS+G G LGHG D P I+ GI + +++ GD H +A+
Sbjct: 70 TVAYSQSGXEVYSWGWGDFGRLGHGNSSDLFTPLPIKALH--GIRIKQIACGDSHCLAVT 127
Query: 227 SSGYVYTWGKGYCGALGHGDEIDKTLPEPLSSLKSHLAVQVCARKRKTFVLVDTGSVYGF 286
G V +WG+ G LG GD D +P+ + + + V A T + + G +YG+
Sbjct: 128 XEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQAFEGIRIKXVAAGAEHTAAVTEDGDLYGW 187
Query: 287 GWMGFGSLGFPDRGVSDKVLRPRILDSLRAHHVSQISTGLYHTVVVTDRGRLFGFGDNER 346
GW +G+LG DR +D+++ R+ S S ++ G HT+ V+ G L+ +G ++
Sbjct: 188 GWGRYGNLGLGDR--TDRLVPERVT-STGGEKXSXVACGWRHTISVSYSGALYTYGWSKY 244
Query: 347 AQLGHDTLRGCLEPTEI 363
QLGH L L P ++
Sbjct: 245 GQLGHGDLEDHLIPHKL 261
Score = 90.5 bits (223), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 75/260 (28%), Positives = 117/260 (45%), Gaps = 8/260 (3%)
Query: 2 QITTGRYHTLLIS-NSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSASEN 60
QI G H L ++ V S G + G LG G +T + +I + V+A
Sbjct: 115 QIACGDSHCLAVTXEGEVQSWGRNQNGQLGLG-DTEDSLVPQKIQAFEGIRIKXVAAGAE 173
Query: 61 HAAFVLQSGQVFTCGDNSSFCCGHRD-TNRPIFRPRLVEALKGVPCKQVTAGLNFTGFLT 119
H A V + G ++ G G D T+R + P V + G V G T ++
Sbjct: 174 HTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLV--PERVTSTGGEKXSXVACGWRHTISVS 231
Query: 120 IRGHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGPSYMLAVTGNGVVYS 179
G ++T G + +GQLGHGD D P + L + QI+ G + A+T +G +Y
Sbjct: 232 YSGALYTYGWSKYGQLGHGDLEDHLIPHKLEALSN-SFISQISGGARHTXALTSDGKLYG 290
Query: 180 FGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGDEHVVALDSSGYVYTWGKGYC 239
+G +G G D+ P +Q VV+VS G H +A+ V+ WG+G
Sbjct: 291 WGWNKFGQVGVGNNLDQCSP--VQVRFPDDQKVVQVSCGWRHTLAVTERNNVFAWGRGTN 348
Query: 240 GALGHGDEIDKTLPEPLSSL 259
G LG G+ +D+ P+ + +L
Sbjct: 349 GQLGIGESVDRNFPKIIEAL 368
Score = 90.1 bits (222), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 60/194 (30%), Positives = 91/194 (46%), Gaps = 6/194 (3%)
Query: 158 VVQIAAGPSYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSA 217
V+ I+AG S+ +A+ +V S+G G + LGHG+ D P + G +V V+
Sbjct: 8 VLIISAGASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSAL--DGHQIVSVTC 65
Query: 218 GDEHVVALDSSGY-VYTWGKGYCGALGHGDEIDKTLPEPLSSLKSHLAVQVCARKRKTFV 276
G +H VA SG VY+WG G G LGHG+ D P P+ +L Q+
Sbjct: 66 GADHTVAYSQSGXEVYSWGWGDFGRLGHGNSSDLFTPLPIKALHGIRIKQIACGDSHCLA 125
Query: 277 LVDTGSVYGFGWMGFGSLGFPDRGVSDKVLRPRILDSLRAHHVSQISTGLYHTVVVTDRG 336
+ G V +G G LG D ++ L P+ + + + ++ G HT VT+ G
Sbjct: 126 VTXEGEVQSWGRNQNGQLGLGD---TEDSLVPQKIQAFEGIRIKXVAAGAEHTAAVTEDG 182
Query: 337 RLFGFGDNERAQLG 350
L+G+G LG
Sbjct: 183 DLYGWGWGRYGNLG 196
Score = 84.3 bits (207), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 56/153 (36%), Positives = 74/153 (48%), Gaps = 4/153 (2%)
Query: 212 VVRVSAGDEHVVALDSSGYVYTWGKGYCGALGHGDEIDKTLPEPLSSLKSHLAVQVCARK 271
V+ +SAG H VAL S V +WG+G G LGHGD D+ P LS+L H V V
Sbjct: 8 VLIISAGASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSVTCGA 67
Query: 272 RKTFVLVDTG-SVYGFGWMGFGSLGFPDRGVSDKVLRPRILDSLRAHHVSQISTGLYHTV 330
T +G VY +GW FG LG G S + P + +L + QI+ G H +
Sbjct: 68 DHTVAYSQSGXEVYSWGWGDFGRLG---HGNSSDLFTPLPIKALHGIRIKQIACGDSHCL 124
Query: 331 VVTDRGRLFGFGDNERAQLGHDTLRGCLEPTEI 363
VT G + +G N+ QLG L P +I
Sbjct: 125 AVTXEGEVQSWGRNQNGQLGLGDTEDSLVPQKI 157
Score = 74.3 bits (181), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 60/208 (28%), Positives = 93/208 (44%), Gaps = 4/208 (1%)
Query: 3 ITTGRYHTLLIS-NSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSASENH 61
+ G HT ++ + ++ G G LG G T + V R+ V+ H
Sbjct: 168 VAAGAEHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVP-ERVTSTGGEKXSXVACGWRH 226
Query: 62 AAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGLNFTGFLTIR 121
V SG ++T G + GH D + P +EAL Q++ G T LT
Sbjct: 227 TISVSYSGALYTYGWSKYGQLGHGDLEDHLI-PHKLEALSNSFISQISGGARHTXALTSD 285
Query: 122 GHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGPSYMLAVTGNGVVYSFG 181
G ++ G N GQ+G G+ LD+ +P + + VVQ++ G + LAVT V+++G
Sbjct: 286 GKLYGWGWNKFGQVGVGNNLDQCSPVQVR-FPDDQKVVQVSCGWRHTLAVTERNNVFAWG 344
Query: 182 SGSNFCLGHGEQHDELQPRAIQTFRRKG 209
G+N LG GE D P+ I+ G
Sbjct: 345 RGTNGQLGIGESVDRNFPKIIEALSVDG 372
>pdb|3KCI|A Chain A, The Third Rld Domain Of Herc2
Length = 389
Score = 123 bits (309), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 99/359 (27%), Positives = 164/359 (45%), Gaps = 8/359 (2%)
Query: 4 TTGRYHTLLISNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSASENHAA 63
++GR + + +++ G + G LG G E + T + VQ+ E
Sbjct: 8 SSGRENLYFQGSGTIYGWGHNHRGQLG-GIEGAKVKVPTPCEALATLRPVQLIGGEQTLF 66
Query: 64 FVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQV--TAGLNFTGFLTIR 121
V G+++ G + G T + P L+E+++ V K+V +G L+
Sbjct: 67 AVTADGKLYATGYGAGGRLGIGGTE-SVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSE 125
Query: 122 GHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGPSYMLAVTGNGVVYSFG 181
G V++ G G+LGHG+ P+ I L + VV +AAG ++ VT G +Y++G
Sbjct: 126 GEVYSWGEAEDGKLGHGNRSPCDRPRVIESLRGI-EVVDVAAGGAHSACVTAAGDLYTWG 184
Query: 182 SGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGDEHVVALDSSGYVYTWGKGYCGA 241
G LGH + D+L+P+ ++ + + + +GD + L V++WG G G
Sbjct: 185 KGRYGRLGHSDSEDQLKPKLVEALQGHRVVDIACGSGDAQTLCLTDDDTVWSWGDGDYGK 244
Query: 242 LGHGDEIDKTLPEPLSSLKSHLAVQVCARKRKTFVLVDTGSVYGFGWMGFGSLGFPDRGV 301
LG G +P + SL V+V + + L +G+VY +G + LG G
Sbjct: 245 LGRGGSDGCKVPMKIDSLTGLGVVKVECGSQFSVALTKSGAVYTWGKGDYHRLGH---GS 301
Query: 302 SDKVLRPRILDSLRAHHVSQISTGLYHTVVVTDRGRLFGFGDNERAQLGHDTLRGCLEP 360
D V RPR + L+ V I+TG H V T+ G ++ +GDN+ QLG T P
Sbjct: 302 DDHVRRPRQVQGLQGKKVIAIATGSLHCVCCTEDGEVYTWGDNDEGQLGDGTTNAIQRP 360
Score = 122 bits (307), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 86/281 (30%), Positives = 139/281 (49%), Gaps = 9/281 (3%)
Query: 53 VQVSASENHAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGL 112
V V++ H + G+V++ G+ GH + + P RPR++E+L+G+ V AG
Sbjct: 110 VAVNSGGKHCLALSSEGEVYSWGEAEDGKLGHGNRS-PCDRPRVIESLRGIEVVDVAAGG 168
Query: 113 NFTGFLTIRGHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIA--AGPSYMLA 170
+ +T G ++T G +G+LGH D+ D+ PK + L+ VV IA +G + L
Sbjct: 169 AHSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLVEALQGH-RVVDIACGSGDAQTLC 227
Query: 171 VTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGDEHVVALDSSGY 230
+T + V+S+G G LG G P I + G+ VV+V G + VAL SG
Sbjct: 228 LTDDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSL--TGLGVVKVECGSQFSVALTKSGA 285
Query: 231 VYTWGKGYCGALGHGDEIDKTLPEPLSSLKSHLAVQVCARKRKTFVLVDTGSVYGFGWMG 290
VYTWGKG LGHG + P + L+ + + + G VY +G
Sbjct: 286 VYTWGKGDYHRLGHGSDDHVRRPRQVQGLQGKKVIAIATGSLHCVCCTEDGEVYTWGDND 345
Query: 291 FGSLGFPDRGVSDKVLRPRILDSLRAHHVSQISTGLYHTVV 331
G LG G ++ + RPR++ +L+ V++++ G HT+
Sbjct: 346 EGQLG---DGTTNAIQRPRLVAALQGKKVNRVACGSAHTLA 383
Score = 101 bits (251), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 82/257 (31%), Positives = 128/257 (49%), Gaps = 16/257 (6%)
Query: 112 LNFTGFLTIRGHVHTCGSNTHGQLG--HGDTLDRPTP-KSIAPLEEVGSVVQIAAGPSYM 168
L F G TI G H N GQLG G + PTP +++A L V Q+ G +
Sbjct: 14 LYFQGSGTIYGWGH----NHRGQLGGIEGAKVKVPTPCEALATLRPV----QLIGGEQTL 65
Query: 169 LAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGDEHVVALDSS 228
AVT +G +Y+ G G+ LG G P +++ + I V V++G +H +AL S
Sbjct: 66 FAVTADGKLYATGYGAGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSE 125
Query: 229 GYVYTWGKGYCGALGHGDEIDKTLPEPLSSLKSHLAVQVCARKRKTFVLVDTGSVYGFGW 288
G VY+WG+ G LGHG+ P + SL+ V V A + + G +Y +G
Sbjct: 126 GEVYSWGEAEDGKLGHGNRSPCDRPRVIESLRGIEVVDVAAGGAHSACVTAAGDLYTWGK 185
Query: 289 MGFGSLGFPDRGVSDKVLRPRILDSLRAHHVSQIS--TGLYHTVVVTDRGRLFGFGDNER 346
+G LG D S+ L+P+++++L+ H V I+ +G T+ +TD ++ +GD +
Sbjct: 186 GRYGRLGHSD---SEDQLKPKLVEALQGHRVVDIACGSGDAQTLCLTDDDTVWSWGDGDY 242
Query: 347 AQLGHDTLRGCLEPTEI 363
+LG GC P +I
Sbjct: 243 GKLGRGGSDGCKVPMKI 259
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 74/283 (26%), Positives = 113/283 (39%), Gaps = 60/283 (21%)
Query: 1 MQITTGRYHTL-LISNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSASE 59
+ + +G H L L S V+S G + G LGHG + C I VV V+A
Sbjct: 110 VAVNSGGKHCLALSSEGEVYSWGEAEDGKLGHG-NRSPCDRPRVIESLRGIEVVDVAAGG 168
Query: 60 NHAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKG----------------- 102
H+A V +G ++T G GH D+ + +P+LVEAL+G
Sbjct: 169 AHSACVTAAGDLYTWGKGRYGRLGHSDSEDQL-KPKLVEALQGHRVVDIACGSGDAQTLC 227
Query: 103 ---------------------------VPCK----------QVTAGLNFTGFLTIRGHVH 125
VP K +V G F+ LT G V+
Sbjct: 228 LTDDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSLTGLGVVKVECGSQFSVALTKSGAVY 287
Query: 126 TCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGPSYMLAVTGNGVVYSFGSGSN 185
T G + +LGHG P+ + L+ V+ IA G + + T +G VY++G
Sbjct: 288 TWGKGDYHRLGHGSDDHVRRPRQVQGLQGK-KVIAIATGSLHCVCCTEDGEVYTWGDNDE 346
Query: 186 FCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGDEHVVALDSS 228
LG G + +PR + + K ++ RV+ G H +A +S
Sbjct: 347 GQLGDGTTNAIQRPRLVAALQGKKVN--RVACGSAHTLAWSTS 387
>pdb|1A12|A Chain A, Regulator Of Chromosome Condensation (Rcc1) Of Human
pdb|1A12|B Chain B, Regulator Of Chromosome Condensation (Rcc1) Of Human
pdb|1A12|C Chain C, Regulator Of Chromosome Condensation (Rcc1) Of Human
Length = 413
Score = 78.6 bits (192), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 105/381 (27%), Positives = 159/381 (41%), Gaps = 49/381 (12%)
Query: 18 VFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSASENHAAFVLQSGQVFTCGDN 77
V + G G LG G + ++ P VVQ A H + +SGQV++ G N
Sbjct: 29 VLTLGQGDVGQLGLGENVMERKKPALVSIPE--DVVQAEAGGMHTVCLSKSGQVYSFGCN 86
Query: 78 SSFCCGHRDTNRPIFRPRLVEALKGVPCK--------QVTAGLNFTGFLTIRGHVHTCGS 129
G RDT+ VE + VP K QV+AG + T LT G V GS
Sbjct: 87 DEGALG-RDTS--------VEGSEMVPGKVELQEKVVQVSAGDSHTAALTDDGRVFLWGS 137
Query: 130 --NTHGQLGHGDTLDRPTPKSIAPLE---EVGSVVQIAAGPSYMLAVTGNGVVYSFGSGS 184
+ +G +G L P KS+ P++ +V VV++A+G +++ +T +G +Y+ G G
Sbjct: 138 FRDNNGVIG----LLEPMKKSMVPVQVQLDV-PVVKVASGNDHLVMLTADGDLYTLGCGE 192
Query: 185 NFCLGH---------GEQHDE--LQPRAIQTFRRKGIHVVRVS---AGDEHVVALDSSGY 230
LG G Q E L P+ + R VR G A+ G+
Sbjct: 193 QGQLGRVPELFANRGGRQGLERLLVPKCVMLKSRGSRGHVRFQDAFCGAYFTFAISHEGH 252
Query: 231 VYTWGKGYCGALGHGDEIDKTLPEPLSSLKSHLAVQV--CARKRKTFVLVDTGSVYGFGW 288
VY +G LG +P+ L+S K+ V + T + G Y G
Sbjct: 253 VYGFGLSNYHQLGTPGTESCFIPQNLTSFKNSTKSWVGFSGGQHHTVCMDSEGKAYSLGR 312
Query: 289 MGFGSLGFPDRGVSDKVLRPRILDSLRAHHVSQISTGLYHTVVVTDRGRLFGFGDNERAQ 348
+G LG + G +K + P ++ L A VS ++ G VT GR+F +G Q
Sbjct: 313 AEYGRLGLGE-GAEEKSI-PTLISRLPA--VSSVACGASVGYAVTKDGRVFAWGMGTNYQ 368
Query: 349 LGHDTLRGCLEPTEIFIQEME 369
LG P E+ +++E
Sbjct: 369 LGTGQDEDAWSPVEMMGKQLE 389
Score = 71.6 bits (174), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 76/260 (29%), Positives = 118/260 (45%), Gaps = 26/260 (10%)
Query: 122 GHVHTCGSNTHGQLGHGDT-LDRPTPKSIAPLEEVGSVVQIAAGPSYMLAVTGNGVVYSF 180
G V T G GQLG G+ ++R P ++ E+V VQ AG + + ++ +G VYSF
Sbjct: 27 GLVLTLGQGDVGQLGLGENVMERKKPALVSIPEDV---VQAEAGGMHTVCLSKSGQVYSF 83
Query: 181 GSGSNFCLGHGE--QHDELQPRAIQTFRRKGIHVVRVSAGDEHVVALDSSGYVYTWG--K 236
G LG + E+ P ++ + VV+VSAGD H AL G V+ WG +
Sbjct: 84 GCNDEGALGRDTSVEGSEMVPGKVELQEK----VVQVSAGDSHTAALTDDGRVFLWGSFR 139
Query: 237 GYCGALGHGDEIDKTLPEPLSSLKSHLAVQVCARKRKTFVLVDTGSVYGFGWMGFGSLG- 295
G +G + + K++ P+ V+V + +L G +Y G G LG
Sbjct: 140 DNNGVIGLLEPMKKSMV-PVQVQLDVPVVKVASGNDHLVMLTADGDLYTLGCGEQGQLGR 198
Query: 296 ----FPDRGVS---DKVLRPR--ILDSL--RAHHVSQIS-TGLYHTVVVTDRGRLFGFGD 343
F +RG +++L P+ +L S R H Q + G Y T ++ G ++GFG
Sbjct: 199 VPELFANRGGRQGLERLLVPKCVMLKSRGSRGHVRFQDAFCGAYFTFAISHEGHVYGFGL 258
Query: 344 NERAQLGHDTLRGCLEPTEI 363
+ QLG C P +
Sbjct: 259 SNYHQLGTPGTESCFIPQNL 278
Score = 68.9 bits (167), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 94/358 (26%), Positives = 145/358 (40%), Gaps = 39/358 (10%)
Query: 1 MQITTGRYHTLLISNS-SVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSASE 59
+Q G HT+ +S S V+S G + G LG + + VVQVSA +
Sbjct: 62 VQAEAGGMHTVCLSKSGQVYSFGCNDEGALGR-DTSVEGSEMVPGKVELQEKVVQVSAGD 120
Query: 60 NHAAFVLQSGQVFTCGDNSSFCCGHRDTN------RPIFRPRL-VEALKGVPCKQVTAGL 112
+H A + G+VF G SF RD N P+ + + V+ VP +V +G
Sbjct: 121 SHTAALTDDGRVFLWG---SF----RDNNGVIGLLEPMKKSMVPVQVQLDVPVVKVASGN 173
Query: 113 NFTGFLTIRGHVHTCGSNTHGQLGH----------GDTLDRPTPKSIAPLEEVGSVVQIA 162
+ LT G ++T G GQLG L+R L+ GS +
Sbjct: 174 DHLVMLTADGDLYTLGCGEQGQLGRVPELFANRGGRQGLERLLVPKCVMLKSRGSRGHVR 233
Query: 163 -----AGPSYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSA 217
G + A++ G VY FG + LG P+ + +F+ V S
Sbjct: 234 FQDAFCGAYFTFAISHEGHVYGFGLSNYHQLGTPGTESCFIPQNLTSFKNSTKSWVGFSG 293
Query: 218 GDEHVVALDSSGYVYTWGKGYCGALGHGDEI-DKTLPEPLSSLKSHLAVQVCARKRKTFV 276
G H V +DS G Y+ G+ G LG G+ +K++P +S L + +V A +
Sbjct: 294 GQHHTVCMDSEGKAYSLGRAEYGRLGLGEGAEEKSIPTLISRLPAVSSVACGA--SVGYA 351
Query: 277 LVDTGSVYGFGWMGFGSLGFPDRGVSDKVLRPRIL--DSLRAHHVSQISTGLYHTVVV 332
+ G V+ +G LG G + P + L V +S+G HTV++
Sbjct: 352 VTKDGRVFAWGMGTNYQLG---TGQDEDAWSPVEMMGKQLENRVVLSVSSGGQHTVLL 406
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 54/184 (29%), Positives = 77/184 (41%), Gaps = 15/184 (8%)
Query: 172 TGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGDEHVVALDSSGYV 231
T G+V + G G LG GE E + A+ + VV+ AG H V L SG V
Sbjct: 24 TEPGLVLTLGQGDVGQLGLGENVMERKKPALVSIPED---VVQAEAGGMHTVCLSKSGQV 80
Query: 232 YTWGKGYCGALGHGDEIDKTLPEPLSSLKSHLAVQVCARKRKTFVLVDTGSVYGFGWMGF 291
Y++G GALG ++ + P VQV A T L D G V+ +G
Sbjct: 81 YSFGCNDEGALGRDTSVEGSEMVPGKVELQEKVVQVSAGDSHTAALTDDGRVFLWG---- 136
Query: 292 GSLGFPDRGVSDKVLRPRILDSLRAH-----HVSQISTGLYHTVVVTDRGRLFGFGDNER 346
F D +L P + V ++++G H V++T G L+ G E+
Sbjct: 137 ---SFRDNNGVIGLLEPMKKSMVPVQVQLDVPVVKVASGNDHLVMLTADGDLYTLGCGEQ 193
Query: 347 AQLG 350
QLG
Sbjct: 194 GQLG 197
Score = 33.5 bits (75), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 51/115 (44%), Gaps = 10/115 (8%)
Query: 255 PLSSLKSHLAVQVCARKRKTFVLVDTGSVYGFGWMGFGSLGFPDRGVSDKVLRPRILDSL 314
P ++ V+V R T + G V G G LG + + K +P ++
Sbjct: 5 PADAIPKSKKVKVSHRSHST----EPGLVLTLGQGDVGQLGLGENVMERK--KPALVSI- 57
Query: 315 RAHHVSQISTGLYHTVVVTDRGRLFGFGDNERAQLGHDT-LRGC-LEPTEIFIQE 367
V Q G HTV ++ G+++ FG N+ LG DT + G + P ++ +QE
Sbjct: 58 -PEDVVQAEAGGMHTVCLSKSGQVYSFGCNDEGALGRDTSVEGSEMVPGKVELQE 111
>pdb|1I2M|B Chain B, Ran-Rcc1-So4 Complex
pdb|1I2M|D Chain D, Ran-Rcc1-So4 Complex
Length = 402
Score = 78.6 bits (192), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 105/381 (27%), Positives = 159/381 (41%), Gaps = 49/381 (12%)
Query: 18 VFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSASENHAAFVLQSGQVFTCGDN 77
V + G G LG G + ++ P VVQ A H + +SGQV++ G N
Sbjct: 18 VLTLGQGDVGQLGLGENVMERKKPALVSIPE--DVVQAEAGGMHTVCLSKSGQVYSFGCN 75
Query: 78 SSFCCGHRDTNRPIFRPRLVEALKGVPCK--------QVTAGLNFTGFLTIRGHVHTCGS 129
G RDT+ VE + VP K QV+AG + T LT G V GS
Sbjct: 76 DEGALG-RDTS--------VEGSEMVPGKVELQEKVVQVSAGDSHTAALTDDGRVFLWGS 126
Query: 130 --NTHGQLGHGDTLDRPTPKSIAPLE---EVGSVVQIAAGPSYMLAVTGNGVVYSFGSGS 184
+ +G +G L P KS+ P++ +V VV++A+G +++ +T +G +Y+ G G
Sbjct: 127 FRDNNGVIG----LLEPMKKSMVPVQVQLDV-PVVKVASGNDHLVMLTADGDLYTLGCGE 181
Query: 185 NFCLGH---------GEQHDE--LQPRAIQTFRRKGIHVVRVS---AGDEHVVALDSSGY 230
LG G Q E L P+ + R VR G A+ G+
Sbjct: 182 QGQLGRVPELFANRGGRQGLERLLVPKCVMLKSRGSRGHVRFQDAFCGAYFTFAISHEGH 241
Query: 231 VYTWGKGYCGALGHGDEIDKTLPEPLSSLKSHLAVQV--CARKRKTFVLVDTGSVYGFGW 288
VY +G LG +P+ L+S K+ V + T + G Y G
Sbjct: 242 VYGFGLSNYHQLGTPGTESCFIPQNLTSFKNSTKSWVGFSGGQHHTVCMDSEGKAYSLGR 301
Query: 289 MGFGSLGFPDRGVSDKVLRPRILDSLRAHHVSQISTGLYHTVVVTDRGRLFGFGDNERAQ 348
+G LG + G +K + P ++ L A VS ++ G VT GR+F +G Q
Sbjct: 302 AEYGRLGLGE-GAEEKSI-PTLISRLPA--VSSVACGASVGYAVTKDGRVFAWGMGTNYQ 357
Query: 349 LGHDTLRGCLEPTEIFIQEME 369
LG P E+ +++E
Sbjct: 358 LGTGQDEDAWSPVEMMGKQLE 378
Score = 72.0 bits (175), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 76/260 (29%), Positives = 118/260 (45%), Gaps = 26/260 (10%)
Query: 122 GHVHTCGSNTHGQLGHGDT-LDRPTPKSIAPLEEVGSVVQIAAGPSYMLAVTGNGVVYSF 180
G V T G GQLG G+ ++R P ++ E+V VQ AG + + ++ +G VYSF
Sbjct: 16 GLVLTLGQGDVGQLGLGENVMERKKPALVSIPEDV---VQAEAGGMHTVCLSKSGQVYSF 72
Query: 181 GSGSNFCLGHGE--QHDELQPRAIQTFRRKGIHVVRVSAGDEHVVALDSSGYVYTWG--K 236
G LG + E+ P ++ + VV+VSAGD H AL G V+ WG +
Sbjct: 73 GCNDEGALGRDTSVEGSEMVPGKVELQEK----VVQVSAGDSHTAALTDDGRVFLWGSFR 128
Query: 237 GYCGALGHGDEIDKTLPEPLSSLKSHLAVQVCARKRKTFVLVDTGSVYGFGWMGFGSLG- 295
G +G + + K++ P+ V+V + +L G +Y G G LG
Sbjct: 129 DNNGVIGLLEPMKKSMV-PVQVQLDVPVVKVASGNDHLVMLTADGDLYTLGCGEQGQLGR 187
Query: 296 ----FPDRGVS---DKVLRPR--ILDSL--RAHHVSQIS-TGLYHTVVVTDRGRLFGFGD 343
F +RG +++L P+ +L S R H Q + G Y T ++ G ++GFG
Sbjct: 188 VPELFANRGGRQGLERLLVPKCVMLKSRGSRGHVRFQDAFCGAYFTFAISHEGHVYGFGL 247
Query: 344 NERAQLGHDTLRGCLEPTEI 363
+ QLG C P +
Sbjct: 248 SNYHQLGTPGTESCFIPQNL 267
Score = 69.3 bits (168), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 94/358 (26%), Positives = 145/358 (40%), Gaps = 39/358 (10%)
Query: 1 MQITTGRYHTLLISNS-SVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSASE 59
+Q G HT+ +S S V+S G + G LG + + VVQVSA +
Sbjct: 51 VQAEAGGMHTVCLSKSGQVYSFGCNDEGALGR-DTSVEGSEMVPGKVELQEKVVQVSAGD 109
Query: 60 NHAAFVLQSGQVFTCGDNSSFCCGHRDTN------RPIFRPRL-VEALKGVPCKQVTAGL 112
+H A + G+VF G SF RD N P+ + + V+ VP +V +G
Sbjct: 110 SHTAALTDDGRVFLWG---SF----RDNNGVIGLLEPMKKSMVPVQVQLDVPVVKVASGN 162
Query: 113 NFTGFLTIRGHVHTCGSNTHGQLGH----------GDTLDRPTPKSIAPLEEVGSVVQIA 162
+ LT G ++T G GQLG L+R L+ GS +
Sbjct: 163 DHLVMLTADGDLYTLGCGEQGQLGRVPELFANRGGRQGLERLLVPKCVMLKSRGSRGHVR 222
Query: 163 -----AGPSYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSA 217
G + A++ G VY FG + LG P+ + +F+ V S
Sbjct: 223 FQDAFCGAYFTFAISHEGHVYGFGLSNYHQLGTPGTESCFIPQNLTSFKNSTKSWVGFSG 282
Query: 218 GDEHVVALDSSGYVYTWGKGYCGALGHGDEI-DKTLPEPLSSLKSHLAVQVCARKRKTFV 276
G H V +DS G Y+ G+ G LG G+ +K++P +S L + +V A +
Sbjct: 283 GQHHTVCMDSEGKAYSLGRAEYGRLGLGEGAEEKSIPTLISRLPAVSSVACGA--SVGYA 340
Query: 277 LVDTGSVYGFGWMGFGSLGFPDRGVSDKVLRPRIL--DSLRAHHVSQISTGLYHTVVV 332
+ G V+ +G LG G + P + L V +S+G HTV++
Sbjct: 341 VTKDGRVFAWGMGTNYQLG---TGQDEDAWSPVEMMGKQLENRVVLSVSSGGQHTVLL 395
Score = 31.6 bits (70), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 48/105 (45%), Gaps = 10/105 (9%)
Query: 265 VQVCARKRKTFVLVDTGSVYGFGWMGFGSLGFPDRGVSDKVLRPRILDSLRAHHVSQIST 324
V+V R T + G V G G LG + + K +P ++ V Q
Sbjct: 4 VKVSHRSHST----EPGLVLTLGQGDVGQLGLGENVMERK--KPALVSI--PEDVVQAEA 55
Query: 325 GLYHTVVVTDRGRLFGFGDNERAQLGHDT-LRGC-LEPTEIFIQE 367
G HTV ++ G+++ FG N+ LG DT + G + P ++ +QE
Sbjct: 56 GGMHTVCLSKSGQVYSFGCNDEGALGRDTSVEGSEMVPGKVELQE 100
>pdb|3MVD|K Chain K, Crystal Structure Of The Chromatin Factor Rcc1 In Complex
With The Nucleosome Core Particle
pdb|3MVD|L Chain L, Crystal Structure Of The Chromatin Factor Rcc1 In Complex
With The Nucleosome Core Particle
Length = 423
Score = 72.8 bits (177), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 70/247 (28%), Positives = 106/247 (42%), Gaps = 19/247 (7%)
Query: 119 TIRGHVHTCGSNTHGQLGHG-DTLDRPTPKSIAPLEEVGSVVQIAAGPSYMLAVTGNGVV 177
T+ G+V CG+ GQLG G D L+R K ++P+ + V I+AG + L +T +G +
Sbjct: 40 TVLGNVLVCGNGDVGQLGLGEDILER---KRLSPVAGIPDAVDISAGGMHNLVLTKSGDI 96
Query: 178 YSFGSGSNFCLGHGEQHD--ELQPRAIQTFRRKGIHVVRVSAGDEHVVALDSSGYVYTWG 235
YSFG LG D E +P I + + +SAGD H L G V+ WG
Sbjct: 97 YSFGCNDEGALGRDTSEDGSESKPDLIDLPGK----ALCISAGDSHSACLLEDGRVFAWG 152
Query: 236 KGYCGALGHGDEIDKTLPEPLSSLKSHLAVQVCARKRKTFVLVDTGSVYGFGWMGFGSLG 295
G ID P+ ++ + + + +L G V+ G G LG
Sbjct: 153 SFRDSHGNMGLTIDGNKRTPIDLMEGTVCCSIASGADHLVILTTAGKVFTVGCAEQGQLG 212
Query: 296 -FPDRGVSDK-------VLRPRILDSLRAHHVSQISTGLYHTVVVTDRGR-LFGFGDNER 346
+R +S + +LRP L RA I Y T + + + ++ G N
Sbjct: 213 RLSERSISGEGRRGKRDLLRPTQLIITRAKPFEAIWATNYCTFMRESQTQVIWATGLNNF 272
Query: 347 AQLGHDT 353
QL H+T
Sbjct: 273 KQLAHET 279
Score = 58.2 bits (139), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 60/237 (25%), Positives = 103/237 (43%), Gaps = 19/237 (8%)
Query: 3 ITTGRYHTLLISNS-SVFSCGSSLCGVLGHGPETT----------QCVSFTRINFPSAAH 51
I +G H ++++ + VF+ G + G LG E + + T++ A
Sbjct: 184 IASGADHLVILTTAGKVFTVGCAEQGQLGRLSERSISGEGRRGKRDLLRPTQLIITRAKP 243
Query: 52 VVQVSASENHAAFVLQSGQ--VFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVT 109
+ A+ N+ F+ +S ++ G N+ H + + LK + + +
Sbjct: 244 FEAIWAT-NYCTFMRESQTQVIWATGLNNFKQLAHETKGKEFALTPIKTELKDI--RHIA 300
Query: 110 AGLNFTGFLTIRGHVHTCGSNTHGQLGHGDTLDR-PTPKSIAPLEEVGSVVQIAAGPSYM 168
G + T LT G +G+LG GD D P + L E +V + G
Sbjct: 301 GGQHHTVILTTDLKCSVVGRPEYGRLGLGDVKDVVEKPTIVKKLTE--KIVSVGCGEVCS 358
Query: 169 LAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGDEHVVAL 225
AVT +G +YS+GSG N LG G+ DEL+P + + +G H++ S G +H + L
Sbjct: 359 YAVTIDGKLYSWGSGVNNQLGVGDGDDELEPIVVVSKNTQGKHMLLASGGGQHAIFL 415
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 89/362 (24%), Positives = 142/362 (39%), Gaps = 34/362 (9%)
Query: 17 SVFSCGSSLCGVLGHGPETTQCVSFTRI-NFPSAAHVVQVSASENHAAFVLQSGQVFTCG 75
+V CG+ G LG G + + + + P A V +SA H + +SG +++ G
Sbjct: 44 NVLVCGNGDVGQLGLGEDILERKRLSPVAGIPDA---VDISAGGMHNLVLTKSGDIYSFG 100
Query: 76 DNSSFCCGHRDTNR--PIFRPRLVEALKGVPCKQVTAGLNFTGFLTIRGHVHTCGS--NT 131
N G RDT+ +P L++ C ++AG + + L G V GS ++
Sbjct: 101 CNDEGALG-RDTSEDGSESKPDLIDLPGKALC--ISAGDSHSACLLEDGRVFAWGSFRDS 157
Query: 132 HGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGPSYMLAVTGNGVVYSFGSGSNFCLGH- 190
HG +G ++ TP L E IA+G +++ +T G V++ G LG
Sbjct: 158 HGNMGLTIDGNKRTP---IDLMEGTVCCSIASGADHLVILTTAGKVFTVGCAEQGQLGRL 214
Query: 191 ------GE----QHDELQPRAIQTFRRKGIHVVRVSAGDEHVVALDSSGYVYTWGKGYCG 240
GE + D L+P + R K + + + + S W G
Sbjct: 215 SERSISGEGRRGKRDLLRPTQLIITRAKPFEAIWAT---NYCTFMRESQTQVIWATGLNN 271
Query: 241 ALGHGDEIDKTLPEPLSSLKSHLA--VQVCARKRKTFVLVDTGSVYGFGWMGFGSLGFPD 298
E K L+ +K+ L + + T +L G +G LG D
Sbjct: 272 FKQLAHET-KGKEFALTPIKTELKDIRHIAGGQHHTVILTTDLKCSVVGRPEYGRLGLGD 330
Query: 299 RGVSDKVLRPRILDSLRAHHVSQISTGLYHTVVVTDRGRLFGFGDNERAQLGHDTLRGCL 358
V D V +P I+ L VS + G + VT G+L+ +G QLG L
Sbjct: 331 --VKDVVEKPTIVKKLTEKIVS-VGCGEVCSYAVTIDGKLYSWGSGVNNQLGVGDGDDEL 387
Query: 359 EP 360
EP
Sbjct: 388 EP 389
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 57/211 (27%), Positives = 86/211 (40%), Gaps = 35/211 (16%)
Query: 171 VTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGI-HVVRVSAGDEHVVALDSSG 229
V GNG V G G + + L P A GI V +SAG H + L SG
Sbjct: 47 VCGNGDVGQLGLGEDIL-----ERKRLSPVA-------GIPDAVDISAGGMHNLVLTKSG 94
Query: 230 YVYTWGKGYCGALGHGDEIDKTLPEPLSSLKSHLAVQVCARKRKTFVLVDTGSVYGFGWM 289
+Y++G GALG D + +P A+ + A + L++ G V F W
Sbjct: 95 DIYSFGCNDEGALGRDTSEDGSESKPDLIDLPGKALCISAGDSHSACLLEDGRV--FAWG 152
Query: 290 GF----GSLGFPDRGVSDKVLRPRILDSLRAHHVSQISTGLYHTVVVTDRGRLFGFGDNE 345
F G++G G + +D + I++G H V++T G++F G E
Sbjct: 153 SFRDSHGNMGLTIDGN-----KRTPIDLMEGTVCCSIASGADHLVILTTAGKVFTVGCAE 207
Query: 346 RAQLGHDTLRGC-----------LEPTEIFI 365
+ QLG + R L PT++ I
Sbjct: 208 QGQLGRLSERSISGEGRRGKRDLLRPTQLII 238
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 60/266 (22%), Positives = 105/266 (39%), Gaps = 23/266 (8%)
Query: 3 ITTGRYHTL-LISNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSASENH 61
I+ G H+ L+ + VF+ GS G+ T T I+ +++ +H
Sbjct: 132 ISAGDSHSACLLEDGRVFAWGS-FRDSHGNMGLTIDGNKRTPIDLMEGTVCCSIASGADH 190
Query: 62 AAFVLQSGQVFTCG----------DNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAG 111
+ +G+VFT G S R R + RP + + P + + A
Sbjct: 191 LVILTTAGKVFTVGCAEQGQLGRLSERSISGEGRRGKRDLLRPTQLIITRAKPFEAIWA- 249
Query: 112 LNFTGFL--TIRGHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLE-EVGSVVQIAAGPSYM 168
N+ F+ + + G N QL H + ++ P++ E+ + IA G +
Sbjct: 250 TNYCTFMRESQTQVIWATGLNNFKQLAHET---KGKEFALTPIKTELKDIRHIAGGQHHT 306
Query: 169 LAVTGNGVVYSFGSGSNFCLGHGEQHDELQ-PRAIQTFRRKGIHVVRVSAGDEHVVALDS 227
+ +T + G LG G+ D ++ P ++ K +V V G+ A+
Sbjct: 307 VILTTDLKCSVVGRPEYGRLGLGDVKDVVEKPTIVKKLTEK---IVSVGCGEVCSYAVTI 363
Query: 228 SGYVYTWGKGYCGALGHGDEIDKTLP 253
G +Y+WG G LG GD D+ P
Sbjct: 364 DGKLYSWGSGVNNQLGVGDGDDELEP 389
>pdb|3OF7|A Chain A, The Crystal Structure Of Prp20p From Saccharomyces
Cerevisiae And Its Binding Properties To Gsp1p And
Histones
Length = 473
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 85/345 (24%), Positives = 140/345 (40%), Gaps = 52/345 (15%)
Query: 50 AHVVQVSASENHAAFVLQSGQVFTCGDNSSFC---CGHRDTNRPIFRPRLVEALKGVPCK 106
+H++ H +Q +F C S C G N+ + RPRL L K
Sbjct: 10 SHIINAQEDYKHMYLSVQPLDIF-CWGTGSMCELGLGPLAKNKEVKRPRLNPFLPRDEAK 68
Query: 107 QVT--AGLNFTGFLTIRGHVHTCGSNTHGQLGHGDTLD---------------------- 142
++ G T L +V + G N G LG DT +
Sbjct: 69 IISFAVGGMHTLALDEESNVWSWGCNDVGALGR-DTSNAKEQLKDMDADDSSDDEDGDLN 127
Query: 143 --RPTP-----KSIAPLEEVGSVVQIAAGPSYMLAVTGNGVVYSFGSG--SNFCLGHGEQ 193
TP +S PL E VVQ+AA + A+ NG VY++G+ + LG +
Sbjct: 128 ELESTPAKIPRESFPPLAEGHKVVQLAATDNMSCALFSNGEVYAWGTFRCNEGILGFYQD 187
Query: 194 HDELQ--PRAIQTFRRKGIHVVRVSAGDEHVVALDSSGYVYTWGKGYCGALGHGDEID-- 249
++Q P + TF + ++V+++ G +H++ LD G V+ WG G LG
Sbjct: 188 KIKIQKTPWKVPTFSK--YNIVQLAPGKDHILFLDEEGMVFAWGNGQQNQLGRKVMERFR 245
Query: 250 -KTL-PEPLSSLKSHLAVQVCARKRKTFVLVDTGSVYGFGWMGFGSLGFPDRGVSDKVL- 306
KTL P P H+ + + + F L + +G FG G + V D L
Sbjct: 246 LKTLDPRPFGL--RHVKY-IASGENHCFALTKDNKLVSWGLNQFGQCGVSE-DVEDGALV 301
Query: 307 -RPRILDSLRAHHVSQISTGLYHTVVVTDRGRLFGFGDNERAQLG 350
+P+ L + I+ G +H+++++ G L+ G + ++G
Sbjct: 302 TKPKRLALPDNVVIRSIAAGEHHSLILSQDGDLYSCGRLDMFEVG 346
Score = 62.4 bits (150), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 69/262 (26%), Positives = 116/262 (44%), Gaps = 28/262 (10%)
Query: 12 LISNSSVFSCGSSLC--GVLGHGPETTQCVSFTRINFP--SAAHVVQVSASENHAAFVLQ 67
L SN V++ G+ C G+LG + + + T P S ++VQ++ ++H F+ +
Sbjct: 163 LFSNGEVYAWGTFRCNEGILGFYQDKIK-IQKTPWKVPTFSKYNIVQLAPGKDHILFLDE 221
Query: 68 SGQVFTCGDNSSFCCGHRDTNRPIFRPRLVE----ALKGVPCKQVTAGLNFTGFLTIRGH 123
G VF G+ G + R FR + ++ L+ V K + +G N LT
Sbjct: 222 EGMVFAWGNGQQNQLGRKVMER--FRLKTLDPRPFGLRHV--KYIASGENHCFALTKDNK 277
Query: 124 VHTCGSNTHGQLGHGDTLDR----PTPKSIAPLEEVGSVVQIAAGPSYMLAVTGNGVVYS 179
+ + G N GQ G + ++ PK +A + V + IAAG + L ++ +G +YS
Sbjct: 278 LVSWGLNQFGQCGVSEDVEDGALVTKPKRLALPDNV-VIRSIAAGEHHSLILSQDGDLYS 336
Query: 180 FGSGSNFCLG----------HGEQHDELQPRAIQTFRRKGIHVVRVSAGDEHVVALDSSG 229
G F +G + + H + + + T V+AG H VA+ +G
Sbjct: 337 CGRLDMFEVGIPKDNLPEYTYKDVHGKARAVPLPTKLNNVPKFKSVAAGSHHSVAVAQNG 396
Query: 230 YVYTWGKGYCGALGHGDEIDKT 251
Y+WG G A+G G D T
Sbjct: 397 IAYSWGFGETYAVGLGPFEDDT 418
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 51/218 (23%), Positives = 90/218 (41%), Gaps = 45/218 (20%)
Query: 177 VYSFGSGSNFCLGHG---EQHDELQPRAIQTFRRKGIHVVRVSAGDEHVVALDSSGYVYT 233
++ +G+GS LG G + + +PR R ++ + G H +ALD V++
Sbjct: 31 IFCWGTGSMCELGLGPLAKNKEVKRPRLNPFLPRDEAKIISFAVGGMHTLALDEESNVWS 90
Query: 234 WGKGYCGALGHG------------------------DEIDKT---LPE----PLSSLKSH 262
WG GALG +E++ T +P PL+ + H
Sbjct: 91 WGCNDVGALGRDTSNAKEQLKDMDADDSSDDEDGDLNELESTPAKIPRESFPPLA--EGH 148
Query: 263 LAVQVCARKRKTFVLVDTGSVYGFGWM--GFGSLGFPDRGVSDKV---LRPRILDSLRAH 317
VQ+ A + L G VY +G G LGF DK+ P + + +
Sbjct: 149 KVVQLAATDNMSCALFSNGEVYAWGTFRCNEGILGF----YQDKIKIQKTPWKVPTFSKY 204
Query: 318 HVSQISTGLYHTVVVTDRGRLFGFGDNERAQLGHDTLR 355
++ Q++ G H + + + G +F +G+ ++ QLG +
Sbjct: 205 NIVQLAPGKDHILFLDEEGMVFAWGNGQQNQLGRKVME 242
Score = 51.6 bits (122), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 54/244 (22%), Positives = 101/244 (41%), Gaps = 24/244 (9%)
Query: 1 MQITTGRYHTLLISNSS-VFSCGSSLCGVLGHG-PETTQCVSFTRINFPSAAHVVQVSAS 58
+Q+ G+ H L + VF+ G+ LG E + + F HV +++
Sbjct: 207 VQLAPGKDHILFLDEEGMVFAWGNGQQNQLGRKVMERFRLKTLDPRPF-GLRHVKYIASG 265
Query: 59 ENHAAFVLQSGQVFTCGDNSSFCCGHRDTNRP---IFRPRLVEALKGVPCKQVTAGLNFT 115
ENH + + ++ + G N CG + + +P+ + V + + AG + +
Sbjct: 266 ENHCFALTKDNKLVSWGLNQFGQCGVSEDVEDGALVTKPKRLALPDNVVIRSIAAGEHHS 325
Query: 116 GFLTIRGHVHTCGSNTHGQLG--------------HGDTLDRPTPKSIAPLEEVGSVVQI 161
L+ G +++CG ++G HG P P L V +
Sbjct: 326 LILSQDGDLYSCGRLDMFEVGIPKDNLPEYTYKDVHGKARAVPLPTK---LNNVPKFKSV 382
Query: 162 AAGPSYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQ-PRAIQTFRRKGIHVVRVSAGDE 220
AAG + +AV NG+ YS+G G + +G G D+ + P I+ + +++ V G +
Sbjct: 383 AAGSHHSVAVAQNGIAYSWGFGETYAVGLGPFEDDTEVPTRIKNTATQDHNIILVGCGGQ 442
Query: 221 HVVA 224
V+
Sbjct: 443 FSVS 446
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 47/206 (22%), Positives = 91/206 (44%), Gaps = 16/206 (7%)
Query: 43 RINFPSAAH---VVQVSASENHAAFVLQSGQVFTCGD---NSSFCCGHRDTNRPIFRPRL 96
R +FP A VVQ++A++N + + +G+V+ G N ++D + P
Sbjct: 138 RESFPPLAEGHKVVQLAATDNMSCALFSNGEVYAWGTFRCNEGILGFYQDKIKIQKTPWK 197
Query: 97 VEALKGVPCKQVTAGLNFTGFLTIRGHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLE-EV 155
V Q+ G + FL G V G+ QLG ++R K++ P +
Sbjct: 198 VPTFSKYNIVQLAPGKDHILFLDEEGMVFAWGNGQQNQLGR-KVMERFRLKTLDPRPFGL 256
Query: 156 GSVVQIAAGPSYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRK-----GI 210
V IA+G ++ A+T + + S+G G ++++ A+ T ++ +
Sbjct: 257 RHVKYIASGENHCFALTKDNKLVSWGLNQ---FGQCGVSEDVEDGALVTKPKRLALPDNV 313
Query: 211 HVVRVSAGDEHVVALDSSGYVYTWGK 236
+ ++AG+ H + L G +Y+ G+
Sbjct: 314 VIRSIAAGEHHSLILSQDGDLYSCGR 339
>pdb|1JTD|B Chain B, Crystal Structure Of Beta-Lactamase Inhibitor Protein-Ii
In Complex With Tem-1 Beta-Lactamase
Length = 273
Score = 37.7 bits (86), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 50/198 (25%), Positives = 75/198 (37%), Gaps = 39/198 (19%)
Query: 3 ITTGRYHTLLISNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHV-VQVSASENH 61
I G YH+L + + V + G G E Q P+ A V A+
Sbjct: 70 IAAGNYHSLALKDGEVIAWG---------GNEDGQTT------VPAEARSGVDAIAAGAW 114
Query: 62 AAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKG-----VPCKQ---VTAGLN 113
A++ L+ G+V GD+S T P V AL G + K + G N
Sbjct: 115 ASYALKDGKVIAWGDDS-----DGQTTVPAEAQSGVTALDGGVYTALAVKNGGVIAWGDN 169
Query: 114 FTGFLTIRGHVHTCGSNTHGQLGHGDTL---------DRPTPKSIAPLEEVGSVVQIAAG 164
+ G T+ + + G + H L D ++ P E + V IA+G
Sbjct: 170 YFGQTTVPAEAQSGVDDVAGGIFHSLALKDGKVIAWGDNRYKQTTVPTEALSGVSAIASG 229
Query: 165 PSYMLAVTGNGVVYSFGS 182
Y LA+ NG V ++GS
Sbjct: 230 EWYSLALK-NGKVIAWGS 246
>pdb|3QHY|B Chain B, Structural, Thermodynamic And Kinetic Analysis Of The
Picomolar Binding Affinity Interaction Of The
Beta-Lactamase Inhibitor Protein- Ii (Blip-Ii) With
Class A Beta-Lactamases
pdb|3QI0|A Chain A, Structural, Thermodynamic And Kinetic Analysis Of The
Picomolar Binding Affinity Interaction Of The
Beta-Lactamase Inhibitor Protein- Ii (Blip-Ii) With
Class A Beta-Lactamases
pdb|3QI0|B Chain B, Structural, Thermodynamic And Kinetic Analysis Of The
Picomolar Binding Affinity Interaction Of The
Beta-Lactamase Inhibitor Protein- Ii (Blip-Ii) With
Class A Beta-Lactamases
pdb|3QI0|C Chain C, Structural, Thermodynamic And Kinetic Analysis Of The
Picomolar Binding Affinity Interaction Of The
Beta-Lactamase Inhibitor Protein- Ii (Blip-Ii) With
Class A Beta-Lactamases
pdb|3QI0|D Chain D, Structural, Thermodynamic And Kinetic Analysis Of The
Picomolar Binding Affinity Interaction Of The
Beta-Lactamase Inhibitor Protein- Ii (Blip-Ii) With
Class A Beta-Lactamases
pdb|3QI0|E Chain E, Structural, Thermodynamic And Kinetic Analysis Of The
Picomolar Binding Affinity Interaction Of The
Beta-Lactamase Inhibitor Protein- Ii (Blip-Ii) With
Class A Beta-Lactamases
pdb|3QI0|F Chain F, Structural, Thermodynamic And Kinetic Analysis Of The
Picomolar Binding Affinity Interaction Of The
Beta-Lactamase Inhibitor Protein- Ii (Blip-Ii) With
Class A Beta-Lactamases
Length = 282
Score = 37.7 bits (86), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 50/198 (25%), Positives = 75/198 (37%), Gaps = 39/198 (19%)
Query: 3 ITTGRYHTLLISNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHV-VQVSASENH 61
I G YH+L + + V + G G E Q P+ A V A+
Sbjct: 68 IAAGNYHSLALKDGEVIAWG---------GNEDGQTT------VPAEARSGVDAIAAGAW 112
Query: 62 AAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKG-----VPCKQ---VTAGLN 113
A++ L+ G+V GD+S T P V AL G + K + G N
Sbjct: 113 ASYALKDGKVIAWGDDS-----DGQTTVPAEAQSGVTALDGGVYTALAVKNGGVIAWGDN 167
Query: 114 FTGFLTIRGHVHTCGSNTHGQLGHGDTL---------DRPTPKSIAPLEEVGSVVQIAAG 164
+ G T+ + + G + H L D ++ P E + V IA+G
Sbjct: 168 YFGQTTVPAEAQSGVDDVAGGIFHSLALKDGKVIAWGDNRYKQTTVPTEALSGVSAIASG 227
Query: 165 PSYMLAVTGNGVVYSFGS 182
Y LA+ NG V ++GS
Sbjct: 228 EWYSLALK-NGKVIAWGS 244
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.138 0.426
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,849,594
Number of Sequences: 62578
Number of extensions: 508967
Number of successful extensions: 1475
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1256
Number of HSP's gapped (non-prelim): 66
length of query: 375
length of database: 14,973,337
effective HSP length: 100
effective length of query: 275
effective length of database: 8,715,537
effective search space: 2396772675
effective search space used: 2396772675
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)