Query 017198
Match_columns 375
No_of_seqs 177 out of 1786
Neff 10.2
Searched_HMMs 46136
Date Fri Mar 29 06:28:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017198.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017198hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5184 ATS1 Alpha-tubulin sup 100.0 1.5E-54 3.3E-59 383.9 27.6 354 8-367 59-443 (476)
2 COG5184 ATS1 Alpha-tubulin sup 100.0 2.3E-47 4.9E-52 338.3 27.8 327 1-334 107-464 (476)
3 KOG1427 Uncharacterized conser 100.0 2.8E-43 6E-48 293.2 19.4 342 14-367 18-379 (443)
4 KOG1427 Uncharacterized conser 100.0 2.6E-43 5.7E-48 293.4 17.5 320 5-335 65-399 (443)
5 KOG0783 Uncharacterized conser 100.0 6.9E-29 1.5E-33 231.5 14.6 301 14-336 140-450 (1267)
6 KOG1428 Inhibitor of type V ad 100.0 3E-27 6.5E-32 228.9 22.6 324 1-352 482-854 (3738)
7 KOG0783 Uncharacterized conser 99.9 7.2E-27 1.6E-31 218.2 14.6 273 63-345 136-417 (1267)
8 KOG1428 Inhibitor of type V ad 99.9 6.8E-21 1.5E-25 185.5 22.2 271 50-329 569-889 (3738)
9 PF00415 RCC1: Regulator of ch 99.3 3.2E-12 7E-17 82.3 4.4 50 228-277 1-51 (51)
10 PF00415 RCC1: Regulator of ch 99.3 1E-11 2.2E-16 79.9 5.4 51 15-65 1-51 (51)
11 PF13540 RCC1_2: Regulator of 99.2 8.5E-12 1.9E-16 69.7 3.8 30 319-348 1-30 (30)
12 PF13540 RCC1_2: Regulator of 99.2 6.6E-11 1.4E-15 66.1 4.4 30 264-293 1-30 (30)
13 KOG0941 E3 ubiquitin protein l 98.9 1.6E-11 3.4E-16 117.2 -7.2 191 93-336 4-197 (850)
14 KOG0941 E3 ubiquitin protein l 98.9 3E-11 6.5E-16 115.4 -5.5 134 211-347 15-156 (850)
15 KOG3669 Uncharacterized conser 96.2 0.52 1.1E-05 44.8 16.9 107 110-234 190-299 (705)
16 PF11725 AvrE: Pathogenicity f 96.1 0.27 5.8E-06 52.5 15.8 244 51-341 490-769 (1774)
17 KOG3669 Uncharacterized conser 94.8 3.3 7.2E-05 39.7 16.7 107 163-285 190-298 (705)
18 KOG0943 Predicted ubiquitin-pr 91.6 0.013 2.7E-07 59.7 -4.2 131 102-237 373-505 (3015)
19 PF11725 AvrE: Pathogenicity f 91.5 2 4.4E-05 46.3 11.0 111 156-281 703-815 (1774)
20 KOG0646 WD40 repeat protein [G 91.2 13 0.00028 34.8 18.0 154 105-287 84-245 (476)
21 KOG1900 Nuclear pore complex, 90.8 13 0.00028 39.5 15.7 203 14-236 97-339 (1311)
22 KOG0943 Predicted ubiquitin-pr 90.6 0.015 3.3E-07 59.1 -4.7 132 51-186 375-508 (3015)
23 KOG1900 Nuclear pore complex, 89.0 35 0.00077 36.5 18.0 218 62-288 92-339 (1311)
24 PF07569 Hira: TUP1-like enhan 88.1 3.3 7.2E-05 35.3 8.2 34 43-78 8-41 (219)
25 KOG0315 G-protein beta subunit 87.8 17 0.00037 31.3 18.7 67 104-182 126-196 (311)
26 KOG0293 WD40 repeat-containing 87.5 16 0.00035 33.8 12.2 70 156-236 396-469 (519)
27 PF04841 Vps16_N: Vps16, N-ter 86.9 28 0.00061 32.9 19.9 203 44-288 76-286 (410)
28 PHA02713 hypothetical protein; 86.3 11 0.00024 37.2 11.8 21 58-78 341-361 (557)
29 PF07569 Hira: TUP1-like enhan 86.0 5.9 0.00013 33.8 8.6 29 156-184 13-41 (219)
30 KOG0315 G-protein beta subunit 85.7 22 0.00049 30.6 18.8 69 211-290 126-198 (311)
31 cd00200 WD40 WD40 domain, foun 85.6 22 0.00047 30.3 30.8 136 61-236 65-206 (289)
32 PF02239 Cytochrom_D1: Cytochr 85.1 29 0.00064 32.2 13.4 124 44-181 21-156 (369)
33 KOG0291 WD40-repeat-containing 83.8 51 0.0011 33.2 27.0 111 168-291 312-424 (893)
34 KOG0646 WD40 repeat protein [G 83.6 39 0.00085 31.7 18.5 154 51-234 83-244 (476)
35 PLN02153 epithiospecifier prot 82.6 39 0.00084 30.9 18.7 16 9-24 79-94 (341)
36 KOG0291 WD40-repeat-containing 82.2 59 0.0013 32.7 22.0 123 51-186 299-425 (893)
37 KOG4441 Proteins containing BT 81.5 29 0.00063 34.4 12.4 196 9-236 326-530 (571)
38 PRK05560 DNA gyrase subunit A; 81.2 73 0.0016 33.1 21.9 218 56-291 545-774 (805)
39 TIGR01063 gyrA DNA gyrase, A s 79.6 82 0.0018 32.8 22.1 216 57-290 544-770 (800)
40 smart00706 TECPR Beta propelle 77.9 7.2 0.00016 22.0 4.3 25 156-180 8-33 (35)
41 COG4257 Vgb Streptogramin lyas 76.4 54 0.0012 28.9 13.5 99 7-127 105-205 (353)
42 PF10168 Nup88: Nuclear pore c 76.0 98 0.0021 31.7 18.5 119 9-128 34-177 (717)
43 smart00706 TECPR Beta propelle 75.9 6.1 0.00013 22.3 3.6 24 104-127 9-33 (35)
44 COG5308 NUP170 Nuclear pore co 73.1 79 0.0017 32.7 12.3 64 11-77 96-160 (1263)
45 PHA03098 kelch-like protein; P 72.9 99 0.0021 30.3 17.0 15 10-24 289-303 (534)
46 KOG0649 WD40 repeat protein [G 71.8 66 0.0014 27.8 12.2 78 156-236 63-143 (325)
47 PHA02713 hypothetical protein; 71.4 33 0.00072 33.9 9.7 16 9-24 344-360 (557)
48 TIGR03300 assembly_YfgL outer 64.9 1.2E+02 0.0025 28.1 12.6 57 219-286 320-376 (377)
49 PHA03098 kelch-like protein; P 64.7 1.1E+02 0.0023 30.0 11.9 18 8-25 335-352 (534)
50 PRK14131 N-acetylneuraminic ac 63.6 92 0.002 29.0 10.7 17 8-24 131-148 (376)
51 TIGR03300 assembly_YfgL outer 61.6 1.3E+02 0.0029 27.7 23.5 57 271-341 320-376 (377)
52 TIGR01063 gyrA DNA gyrase, A s 60.9 2.2E+02 0.0047 29.8 26.1 267 56-350 493-775 (800)
53 cd00200 WD40 WD40 domain, foun 60.7 1E+02 0.0022 26.0 28.3 107 51-183 11-123 (289)
54 PLN02153 epithiospecifier prot 60.6 1.3E+02 0.0029 27.3 23.2 17 8-24 25-41 (341)
55 PRK13979 DNA topoisomerase IV 58.6 2.6E+02 0.0055 29.9 21.7 132 49-190 551-696 (957)
56 PLN03215 ascorbic acid mannose 57.9 36 0.00077 31.6 6.5 57 3-75 165-225 (373)
57 PF06739 SBBP: Beta-propeller 57.0 14 0.0003 21.5 2.6 18 220-237 15-32 (38)
58 KOG0278 Serine/threonine kinas 56.9 1.3E+02 0.0029 26.1 10.9 38 91-129 133-172 (334)
59 PF12341 DUF3639: Protein of u 56.2 30 0.00065 18.5 3.9 24 156-179 2-25 (27)
60 KOG1240 Protein kinase contain 53.5 3.3E+02 0.0071 29.6 13.9 189 51-269 1050-1246(1431)
61 PHA02790 Kelch-like protein; P 53.3 96 0.0021 30.0 9.1 17 62-78 356-372 (480)
62 KOG4441 Proteins containing BT 51.1 91 0.002 31.0 8.6 147 9-182 374-530 (571)
63 TIGR03548 mutarot_permut cycli 50.5 1.6E+02 0.0035 26.5 9.8 18 8-25 116-133 (323)
64 KOG1408 WD40 repeat protein [F 49.7 1.3E+02 0.0028 30.4 9.0 29 313-341 214-246 (1080)
65 PF04762 IKI3: IKI3 family; I 48.2 3.7E+02 0.008 28.7 21.4 27 103-129 427-455 (928)
66 KOG0293 WD40 repeat-containing 48.2 2.4E+02 0.0052 26.5 13.6 26 157-182 442-469 (519)
67 TIGR03547 muta_rot_YjhT mutatr 46.7 2.3E+02 0.0049 25.8 10.6 16 9-24 111-127 (346)
68 PF04762 IKI3: IKI3 family; I 46.1 4E+02 0.0086 28.4 23.5 27 50-76 427-455 (928)
69 PRK05560 DNA gyrase subunit A; 45.6 3.8E+02 0.0082 28.1 26.9 265 55-347 494-775 (805)
70 COG4257 Vgb Streptogramin lyas 45.6 2.2E+02 0.0048 25.3 15.4 141 7-181 63-206 (353)
71 KOG0278 Serine/threonine kinas 44.4 2.2E+02 0.0047 24.9 12.5 81 145-242 135-218 (334)
72 PF07646 Kelch_2: Kelch motif; 44.3 24 0.00053 21.5 2.4 17 8-24 4-20 (49)
73 PHA02790 Kelch-like protein; P 44.3 3.1E+02 0.0066 26.6 13.7 15 116-130 357-371 (480)
74 KOG1034 Transcriptional repres 44.1 62 0.0013 29.2 5.5 57 276-343 324-382 (385)
75 KOG2106 Uncharacterized conser 44.0 3.1E+02 0.0067 26.5 25.5 57 108-167 285-341 (626)
76 TIGR02658 TTQ_MADH_Hv methylam 41.4 2.9E+02 0.0063 25.5 22.2 30 316-345 289-319 (352)
77 KOG0307 Vesicle coat complex C 40.7 1.2E+02 0.0027 31.9 7.8 33 211-243 255-290 (1049)
78 PF00167 FGF: Fibroblast growt 40.3 1.6E+02 0.0035 22.2 7.3 65 52-127 2-66 (122)
79 PF13418 Kelch_4: Galactose ox 39.7 29 0.00063 21.0 2.2 17 8-24 4-21 (49)
80 PRK14131 N-acetylneuraminic ac 39.5 3.2E+02 0.0068 25.4 20.0 18 166-183 131-148 (376)
81 PF13854 Kelch_5: Kelch motif 38.5 36 0.00078 20.0 2.4 18 8-25 7-24 (42)
82 KOG2444 WD40 repeat protein [G 37.9 1.9E+02 0.004 24.8 7.2 70 55-135 66-137 (238)
83 KOG1034 Transcriptional repres 37.1 85 0.0018 28.4 5.3 58 62-128 322-381 (385)
84 TIGR01062 parC_Gneg DNA topois 37.0 4.9E+02 0.011 26.9 15.8 133 43-188 518-659 (735)
85 PF04841 Vps16_N: Vps16, N-ter 36.5 3.8E+02 0.0081 25.4 24.3 71 103-181 81-153 (410)
86 KOG0316 Conserved WD40 repeat- 35.8 2.9E+02 0.0063 23.9 13.3 40 142-182 133-172 (307)
87 PF01436 NHL: NHL repeat; Int 35.6 68 0.0015 16.9 3.0 17 273-289 5-21 (28)
88 PLN03215 ascorbic acid mannose 35.6 1.9E+02 0.0041 27.0 7.5 62 104-181 161-225 (373)
89 PF07312 DUF1459: Protein of u 35.2 25 0.00055 24.1 1.4 11 337-347 57-68 (84)
90 KOG0289 mRNA splicing factor [ 34.0 4.1E+02 0.0088 25.2 9.2 107 7-127 349-459 (506)
91 PF13964 Kelch_6: Kelch motif 33.7 41 0.0009 20.5 2.2 19 8-26 4-22 (50)
92 KOG4693 Uncharacterized conser 33.4 1.5E+02 0.0032 26.1 6.0 17 7-23 242-258 (392)
93 PF02239 Cytochrom_D1: Cytochr 32.9 4.1E+02 0.0088 24.7 11.0 65 104-182 28-96 (369)
94 PF03785 Peptidase_C25_C: Pept 31.4 79 0.0017 22.0 3.4 45 317-361 16-61 (81)
95 PF07250 Glyoxal_oxid_N: Glyox 30.5 1.7E+02 0.0038 25.4 6.2 110 14-131 76-190 (243)
96 PF03785 Peptidase_C25_C: Pept 29.8 94 0.002 21.6 3.5 32 51-82 17-49 (81)
97 TIGR01062 parC_Gneg DNA topois 29.8 6.5E+02 0.014 26.1 20.1 164 54-243 489-660 (735)
98 cd00058 FGF Acidic and basic f 29.6 2.5E+02 0.0055 21.3 6.9 63 54-127 2-64 (123)
99 TIGR03548 mutarot_permut cycli 29.4 4.2E+02 0.0091 23.8 16.4 18 9-26 7-24 (323)
100 PF09081 DUF1921: Domain of un 29.1 51 0.0011 20.1 1.9 20 2-21 30-50 (51)
101 KOG1188 WD40 repeat protein [G 27.7 4.8E+02 0.01 23.9 16.3 79 51-134 75-155 (376)
102 PLN02193 nitrile-specifier pro 27.6 2.6E+02 0.0056 27.0 7.6 17 8-24 271-287 (470)
103 PF07250 Glyoxal_oxid_N: Glyox 27.6 2E+02 0.0042 25.0 6.0 73 4-78 115-190 (243)
104 cd00265 MADS_MEF2_like MEF2 (m 27.5 75 0.0016 21.9 2.8 24 2-25 35-60 (77)
105 PLN02772 guanylate kinase 25.9 1.7E+02 0.0036 27.6 5.5 65 7-78 26-96 (398)
106 TIGR02658 TTQ_MADH_Hv methylam 25.6 5.4E+02 0.012 23.8 26.5 63 12-78 52-126 (352)
107 KOG0307 Vesicle coat complex C 24.5 3.4E+02 0.0074 28.9 7.8 49 248-296 240-291 (1049)
108 TIGR01061 parC_Gpos DNA topois 24.4 8.1E+02 0.018 25.4 16.0 127 55-189 538-672 (738)
109 PF01344 Kelch_1: Kelch motif; 23.8 1E+02 0.0022 18.2 2.7 16 9-24 5-20 (47)
110 KOG1230 Protein containing rep 23.8 6.4E+02 0.014 24.0 9.3 18 219-236 233-250 (521)
111 KOG0294 WD40 repeat-containing 23.7 5.6E+02 0.012 23.3 18.7 109 51-182 45-156 (362)
112 PF13938 DUF4213: Domain of un 23.1 1E+02 0.0022 21.7 3.0 23 100-122 9-31 (87)
113 PF13570 PQQ_3: PQQ-like domai 23.0 1.1E+02 0.0024 17.5 2.7 20 56-75 18-37 (40)
114 KOG0282 mRNA splicing factor [ 22.7 6.9E+02 0.015 24.0 15.7 79 264-352 390-470 (503)
115 PF06433 Me-amine-dh_H: Methyl 22.6 3.6E+02 0.0079 24.7 6.9 64 164-236 146-212 (342)
116 KOG2280 Vacuolar assembly/sort 22.4 8.7E+02 0.019 25.1 14.1 150 161-340 87-242 (829)
117 PF06433 Me-amine-dh_H: Methyl 22.0 6.3E+02 0.014 23.3 8.7 167 3-182 33-212 (342)
118 PRK02529 petN cytochrome b6-f 21.9 92 0.002 17.3 1.8 14 337-350 19-32 (33)
119 PF11399 DUF3192: Protein of u 21.5 76 0.0017 23.3 2.0 23 271-293 79-101 (102)
120 PHA00684 hypothetical protein 21.5 63 0.0014 24.5 1.6 19 17-35 1-19 (128)
121 PF10168 Nup88: Nuclear pore c 21.5 9.1E+02 0.02 24.9 19.2 122 61-182 34-178 (717)
122 PF06204 CBM_X: Putative carbo 21.4 2.6E+02 0.0056 18.6 4.8 28 51-78 26-53 (66)
123 KOG0641 WD40 repeat protein [G 21.0 3.7E+02 0.0081 23.0 6.1 68 274-346 37-111 (350)
124 KOG0282 mRNA splicing factor [ 20.9 7.6E+02 0.016 23.8 16.5 31 266-296 437-469 (503)
No 1
>COG5184 ATS1 Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton]
Probab=100.00 E-value=1.5e-54 Score=383.86 Aligned_cols=354 Identities=25% Similarity=0.361 Sum_probs=288.6
Q ss_pred CeeEEE-eCCcEEEEeCCCCCccCCCCCCCeeeeeeeecCC--CCCCEEEEecCCceEEEEEcCCcEEEeeCCCCCcccC
Q 017198 8 YHTLLI-SNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFP--SAAHVVQVSASENHAAFVLQSGQVFTCGDNSSFCCGH 84 (375)
Q Consensus 8 ~~~~~l-~~g~l~~wG~n~~g~Lg~~~~~~~~~~~~~~~~~--~~~~i~~i~~g~~~~~~lt~~g~vy~~G~n~~gqlg~ 84 (375)
.|...+ .-..||+||+|..++||++..+.....|+...+. ....|++++||..|+++|++||+||+||.|..|+||.
T Consensus 59 ~~~~~~~~~~~v~~~Gsn~~~eLGlg~de~~~~~P~~~~~~~~d~~~i~~~acGg~hsl~ld~Dg~lyswG~N~~G~Lgr 138 (476)
T COG5184 59 KHTHLLVKMASVYSWGSNGMNELGLGNDETKVDRPQLNPFGRIDKASIIKIACGGNHSLGLDHDGNLYSWGDNDDGALGR 138 (476)
T ss_pred cchhhhhheeeeEEEecCcceeeccCCchhcccCceecCcccccceeeEEeecCCceEEeecCCCCEEEeccCccccccc
Confidence 455566 7788999999999999999888866778877766 4459999999999999999999999999999999997
Q ss_pred CC---------------CCCceecCEEccc----cCCcCeEEEEccCCeEEEEEcCCCEEEEeCCCCCcccCCCCCCCCc
Q 017198 85 RD---------------TNRPIFRPRLVEA----LKGVPCKQVTAGLNFTGFLTIRGHVHTCGSNTHGQLGHGDTLDRPT 145 (375)
Q Consensus 85 ~~---------------~~~~~~~p~~i~~----~~~~~i~~v~~g~~~~~~lt~~g~v~~~G~n~~g~lg~~~~~~~~~ 145 (375)
.. ......+|..+.. ....+++++.||++++++++++|+||+||....+.++.+.......
T Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~tP~~v~~~s~~~s~~~vv~l~cg~e~svil~~~G~V~~~gt~r~~e~~~g~~~~s~k 218 (476)
T COG5184 139 DIHKDICDQNNDIIDFDDYELESTPFKVPGGSSAKSHLRVVKLACGWEISVILTADGRVYSWGTFRCGELGQGSYKNSQK 218 (476)
T ss_pred ccccccccccccccccchhhcccCCceeeccccccCChheEEeecCCceEEEEccCCcEEEecCcccccccccccccccc
Confidence 76 2123566766655 2234799999999999999999999999998888887774433322
Q ss_pred ----ceeecCCCCCCCEEEEEeCCCeEEEEECCCcEEEEeCCCCCccCCCCCCCccCceeeeccccCCccEEEEEcCCCe
Q 017198 146 ----PKSIAPLEEVGSVVQIAAGPSYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGDEH 221 (375)
Q Consensus 146 ----p~~~~~~~~~~~i~~i~~g~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~p~~i~~~~~~~~~i~~i~~g~~~ 221 (375)
++++... ...|+++++|.+|.++|+++|++|.||.|..||||.........+..+..+. .-..|..|+||.+|
T Consensus 219 ~~~~~~p~~v~--~~~i~qla~G~dh~i~lt~~G~vy~~Gs~qkgqlG~~~~e~~~~~~lv~~~f-~i~~i~~vacG~~h 295 (476)
T COG5184 219 TSIQFTPLKVP--KKAIVQLAAGADHLIALTNEGKVYGWGSNQKGQLGRPTSERLKLVVLVGDPF-AIRNIKYVACGKDH 295 (476)
T ss_pred ceeeeeeeecC--chheeeeccCCceEEEEecCCcEEEecCCcccccCCchhhhcccccccCChh-hhhhhhhcccCcce
Confidence 3333322 2689999999999999999999999999999999998887777666665432 12247889999999
Q ss_pred EEEEeCCCCEEEEeCCCCCCCCCCCCC----CcccCeeccCCCCCceEEEEecCCcEEEEEcCCcEEEEeCCCCCCCCCC
Q 017198 222 VVALDSSGYVYTWGKGYCGALGHGDEI----DKTLPEPLSSLKSHLAVQVCARKRKTFVLVDTGSVYGFGWMGFGSLGFP 297 (375)
Q Consensus 222 ~~~lt~~g~v~~~G~n~~gqlg~~~~~----~~~~p~~i~~~~~~~i~~i~~g~~~~~~l~~~g~vy~~G~n~~gqlg~~ 297 (375)
+++|+++|++|+||.|.+|||+.+... ....|.....+....|..|++|..|+++|..+|.||.||.+..+|||..
T Consensus 296 ~~al~~~G~i~a~G~n~fgqlg~~~~~~~~a~~tk~~~~~~~~~~~i~~is~ge~H~l~L~~~G~l~a~Gr~~~~qlg~~ 375 (476)
T COG5184 296 SLALDEDGEIYAWGVNIFGQLGAGSDGEIGALTTKPNYKQLLSGVTICSISAGESHSLILRKDGTLYAFGRGDRGQLGIQ 375 (476)
T ss_pred EEEEcCCCeEEEeccchhcccccCcccccceeeccccccccCCCceEEEEecCcceEEEEecCceEEEecCCccccccCc
Confidence 999999999999999999999998221 1234455555566679999999999999999999999999999999998
Q ss_pred CCCCCCceecceEcCccCCCcEEEEEeCCCceEEEEcCCCEEEeeCCCCCCCCcCC-CCCcccceEEEecc
Q 017198 298 DRGVSDKVLRPRILDSLRAHHVSQISTGLYHTVVVTDRGRLFGFGDNERAQLGHDT-LRGCLEPTEIFIQE 367 (375)
Q Consensus 298 ~~~~~~~~~~p~~~~~~~~~~i~~i~~G~~h~~~l~~~g~v~~wG~n~~gqlG~g~-~~~~~~p~~v~~~~ 367 (375)
... .....+|.++... ..+.+++||.+|+++.+++|+||+||++++||||.|. .+.+..|+.++.+.
T Consensus 376 ~~~-~~~~~~~~~ls~~--~~~~~v~~gt~~~~~~t~~gsvy~wG~ge~gnlG~g~~~~~~~~pt~i~~~~ 443 (476)
T COG5184 376 EEI-TIDVSTPTKLSVA--IKLEQVACGTHHNIARTDDGSVYSWGWGEHGNLGNGPKEADVLVPTLIRQPL 443 (476)
T ss_pred ccc-eeecCCccccccc--cceEEEEecCccceeeccCCceEEecCchhhhccCCchhhhccccccccccc
Confidence 644 3334555555533 3799999999999999999999999999999999985 67888999888543
No 2
>COG5184 ATS1 Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton]
Probab=100.00 E-value=2.3e-47 Score=338.29 Aligned_cols=327 Identities=24% Similarity=0.356 Sum_probs=262.3
Q ss_pred CeeeecCCeeEEE-eCCcEEEEeCCCCCccCCCC---------------CCCeeeeeeeecCCC----CCCEEEEecCCc
Q 017198 1 MQITTGRYHTLLI-SNSSVFSCGSSLCGVLGHGP---------------ETTQCVSFTRINFPS----AAHVVQVSASEN 60 (375)
Q Consensus 1 v~i~~G~~~~~~l-~~g~l~~wG~n~~g~Lg~~~---------------~~~~~~~~~~~~~~~----~~~i~~i~~g~~ 60 (375)
++++||..|+++| +|++||+||.|..|+||... ..+....|..+.... ..++++++||++
T Consensus 107 ~~~acGg~hsl~ld~Dg~lyswG~N~~G~Lgr~~~~~~~~~~~~~~~~~~~~~~~tP~~v~~~s~~~s~~~vv~l~cg~e 186 (476)
T COG5184 107 IKIACGGNHSLGLDHDGNLYSWGDNDDGALGRDIHKDICDQNNDIIDFDDYELESTPFKVPGGSSAKSHLRVVKLACGWE 186 (476)
T ss_pred EEeecCCceEEeecCCCCEEEeccCcccccccccccccccccccccccchhhcccCCceeeccccccCChheEEeecCCc
Confidence 5899999999999 99999999999999999976 212233455554411 237999999999
Q ss_pred eEEEEEcCCcEEEeeCCCCCcccCCCCCC-ce--ecCEEccccCCcCeEEEEccCCeEEEEEcCCCEEEEeCCCCCcccC
Q 017198 61 HAAFVLQSGQVFTCGDNSSFCCGHRDTNR-PI--FRPRLVEALKGVPCKQVTAGLNFTGFLTIRGHVHTCGSNTHGQLGH 137 (375)
Q Consensus 61 ~~~~lt~~g~vy~~G~n~~gqlg~~~~~~-~~--~~p~~i~~~~~~~i~~v~~g~~~~~~lt~~g~v~~~G~n~~g~lg~ 137 (375)
++++|+++|+||.||....+.++.+.... .. ..++++..+ ...|+++++|..|.++|+++|++|.||++..||||.
T Consensus 187 ~svil~~~G~V~~~gt~r~~e~~~g~~~~s~k~~~~~~p~~v~-~~~i~qla~G~dh~i~lt~~G~vy~~Gs~qkgqlG~ 265 (476)
T COG5184 187 ISVILTADGRVYSWGTFRCGELGQGSYKNSQKTSIQFTPLKVP-KKAIVQLAAGADHLIALTNEGKVYGWGSNQKGQLGR 265 (476)
T ss_pred eEEEEccCCcEEEecCccccccccccccccccceeeeeeeecC-chheeeeccCCceEEEEecCCcEEEecCCcccccCC
Confidence 99999999999999998888887773321 11 223333333 457999999999999999999999999999999999
Q ss_pred CCCCCCCcceeecCCCCCCCEEEEEeCCCeEEEEECCCcEEEEeCCCCCccCCCCCCCc----cCceeeeccccCCccEE
Q 017198 138 GDTLDRPTPKSIAPLEEVGSVVQIAAGPSYMLAVTGNGVVYSFGSGSNFCLGHGEQHDE----LQPRAIQTFRRKGIHVV 213 (375)
Q Consensus 138 ~~~~~~~~p~~~~~~~~~~~i~~i~~g~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~----~~p~~i~~~~~~~~~i~ 213 (375)
........+..+..+.....|+.|+||.+|+++|+++|+||+||.|.++|++.++.... ..|.....+ ....|.
T Consensus 266 ~~~e~~~~~~lv~~~f~i~~i~~vacG~~h~~al~~~G~i~a~G~n~fgqlg~~~~~~~~a~~tk~~~~~~~--~~~~i~ 343 (476)
T COG5184 266 PTSERLKLVVLVGDPFAIRNIKYVACGKDHSLALDEDGEIYAWGVNIFGQLGAGSDGEIGALTTKPNYKQLL--SGVTIC 343 (476)
T ss_pred chhhhcccccccCChhhhhhhhhcccCcceEEEEcCCCeEEEeccchhcccccCcccccceeeccccccccC--CCceEE
Confidence 98888888888877766677899999999999999999999999999999999822111 122222111 233589
Q ss_pred EEEcCCCeEEEEeCCCCEEEEeCCCCCCCCCCC--CCCcccCeeccCCCCCceEEEEecCCcEEEEEcCCcEEEEeCCCC
Q 017198 214 RVSAGDEHVVALDSSGYVYTWGKGYCGALGHGD--EIDKTLPEPLSSLKSHLAVQVCARKRKTFVLVDTGSVYGFGWMGF 291 (375)
Q Consensus 214 ~i~~g~~~~~~lt~~g~v~~~G~n~~gqlg~~~--~~~~~~p~~i~~~~~~~i~~i~~g~~~~~~l~~~g~vy~~G~n~~ 291 (375)
.|+++..|+++|..+|.||+||.+..+|||... +....+|+++.... .+.+++||..|+++.+++|.||+||.+.+
T Consensus 344 ~is~ge~H~l~L~~~G~l~a~Gr~~~~qlg~~~~~~~~~~~~~~ls~~~--~~~~v~~gt~~~~~~t~~gsvy~wG~ge~ 421 (476)
T COG5184 344 SISAGESHSLILRKDGTLYAFGRGDRGQLGIQEEITIDVSTPTKLSVAI--KLEQVACGTHHNIARTDDGSVYSWGWGEH 421 (476)
T ss_pred EEecCcceEEEEecCceEEEecCCccccccCcccceeecCCcccccccc--ceEEEEecCccceeeccCCceEEecCchh
Confidence 999999999999999999999999999999988 44455666655433 48999999999999999999999999999
Q ss_pred CCCCCCCCCCCCceecceEcCc--cCCCcEEEEEeCCCceEEEEc
Q 017198 292 GSLGFPDRGVSDKVLRPRILDS--LRAHHVSQISTGLYHTVVVTD 334 (375)
Q Consensus 292 gqlg~~~~~~~~~~~~p~~~~~--~~~~~i~~i~~G~~h~~~l~~ 334 (375)
++||.++. ......|+.++. ++..+++..-|+...+++...
T Consensus 422 gnlG~g~~--~~~~~~pt~i~~~~~~~~~~i~~g~~~~~~v~~~~ 464 (476)
T COG5184 422 GNLGNGPK--EADVLVPTLIRQPLLSGHNIILAGYGNQFSVIEET 464 (476)
T ss_pred hhccCCch--hhhccccccccccccCCCceEEeccCcceEEEecc
Confidence 99998864 344566777774 667789998898888777654
No 3
>KOG1427 consensus Uncharacterized conserved protein, contains RCC1 domain [Function unknown]
Probab=100.00 E-value=2.8e-43 Score=293.25 Aligned_cols=342 Identities=22% Similarity=0.369 Sum_probs=273.9
Q ss_pred eCCcEEEEeCCCCCccCCCCCCCee--eeeeeecCCCCCCEEEEecC--CceEEEEEcCCcEEEeeCCCCCcccCCCCCC
Q 017198 14 SNSSVFSCGSSLCGVLGHGPETTQC--VSFTRINFPSAAHVVQVSAS--ENHAAFVLQSGQVFTCGDNSSFCCGHRDTNR 89 (375)
Q Consensus 14 ~~g~l~~wG~n~~g~Lg~~~~~~~~--~~~~~~~~~~~~~i~~i~~g--~~~~~~lt~~g~vy~~G~n~~gqlg~~~~~~ 89 (375)
.-|++..+|.-...+.|..+..... ..|.++.-....+|..|+.| ..|+++++.+|+.|.||+|..||||+++..
T Consensus 18 ~~g~ml~~g~v~wd~tgkRd~~~~~NL~sphR~~~l~gv~iR~VasG~~aaH~vli~megk~~~wGRNekGQLGhgD~k- 96 (443)
T KOG1427|consen 18 KGGEMLFCGAVAWDITGKRDGAMEGNLVSPHRLRPLVGVNIRFVASGCAAAHCVLIDMEGKCYTWGRNEKGQLGHGDMK- 96 (443)
T ss_pred CCccEEEeccchhhhhcccccccccccccceeccccccceEEEEecccchhhEEEEecccceeecccCccCccCccchh-
Confidence 3577888888877777776665533 34444443333467777765 689999999999999999999999999764
Q ss_pred ceecCEEccccCCcCeEEEEccCCeEEEEEcCCCEEEEeCCCCCcccCCCCCCCCcceeecCCCCCCCEEEEEeCCCeEE
Q 017198 90 PIFRPRLVEALKGVPCKQVTAGLNFTGFLTIRGHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGPSYML 169 (375)
Q Consensus 90 ~~~~p~~i~~~~~~~i~~v~~g~~~~~~lt~~g~v~~~G~n~~g~lg~~~~~~~~~p~~~~~~~~~~~i~~i~~g~~~~~ 169 (375)
...+|+.|..+...+|++.+||++|+++||++|+||.||.|.+||||.+..........++.... ..|+.|+||.+|++
T Consensus 97 ~~e~Ptvi~gL~~~~iv~AA~GrnHTl~ltdtG~v~afGeNK~GQlGlgn~~~~v~s~~~~~~~~-~~v~~v~cga~ftv 175 (443)
T KOG1427|consen 97 QRERPTVISGLSKHKIVKAAAGRNHTLVLTDTGQVLAFGENKYGQLGLGNAKNEVESTPLPCVVS-DEVTNVACGADFTV 175 (443)
T ss_pred hccCCchhhhhhhhhHHHHhhccCcEEEEecCCcEEEecccccccccccccccccccCCCccccC-ccceeeccccceEE
Confidence 47899999999999999999999999999999999999999999999997655432222222222 68999999999999
Q ss_pred EEECCCcEEEEeCCCCCccCCCCCCCc------------cCceeeeccccCCccEEEEEcCCCeEEEEeCCCCEEEEeCC
Q 017198 170 AVTGNGVVYSFGSGSNFCLGHGEQHDE------------LQPRAIQTFRRKGIHVVRVSAGDEHVVALDSSGYVYTWGKG 237 (375)
Q Consensus 170 ~lt~~g~v~~~G~n~~gqlg~~~~~~~------------~~p~~i~~~~~~~~~i~~i~~g~~~~~~lt~~g~v~~~G~n 237 (375)
+|...+.+.++|.-.|||||++..... ..|+.-......+..|++++||.+|+++++++++||.||.+
T Consensus 176 ~l~~~~si~t~glp~ygqlgh~td~~~~~~~~~~~~~~e~~pr~~~i~~~dgvqiv~~acg~nhtvavd~nkrVysWGFG 255 (443)
T KOG1427|consen 176 WLSSTESILTAGLPQYGQLGHGTDNEFNMKDSSVRLAYEAQPRPKAIASLDGVQIVKVACGTNHTVAVDKNKRVYSWGFG 255 (443)
T ss_pred EeecccceeecCCccccccccCcchhhccccccceeeeecCCCccccccccceeeEEEeccCcceeeecCCccEEEeccc
Confidence 999999999999999999999865432 22332222334567899999999999999999999999999
Q ss_pred CCCCCCCCCCCCcccCeeccCCC--CCceEEEEecCCcEEEEEcCCcEEEEeCCCCCCCCCCCCCCCCceecceEcCccC
Q 017198 238 YCGALGHGDEIDKTLPEPLSSLK--SHLAVQVCARKRKTFVLVDTGSVYGFGWMGFGSLGFPDRGVSDKVLRPRILDSLR 315 (375)
Q Consensus 238 ~~gqlg~~~~~~~~~p~~i~~~~--~~~i~~i~~g~~~~~~l~~~g~vy~~G~n~~gqlg~~~~~~~~~~~~p~~~~~~~ 315 (375)
.||.||+....+...|.++..+. +.-...+.||+..++++.+-|.||.||.+.. ..+....|.++..++
T Consensus 256 GyGRLGHaEqKDEmvpRlik~Fd~~~rg~~~~~~g~t~Sl~v~e~G~Lf~~g~~k~---------~ge~~mypkP~~dls 326 (443)
T KOG1427|consen 256 GYGRLGHAEQKDEMVPRLIKVFDRNNRGPPNAILGYTGSLNVAEGGQLFMWGKIKN---------NGEDWMYPKPMMDLS 326 (443)
T ss_pred cccccccccchhhHHHHHHHHhcCCCCCCcceeeecccceeecccceeEEeecccc---------CcccccCCCchhhcC
Confidence 99999999999999999887654 3446778899999999999999999998743 255678899999999
Q ss_pred CCcEEEEEeCCCceEEEEcCCCEEEeeCCCCCCCCcC-C-CCCcccceEEEecc
Q 017198 316 AHHVSQISTGLYHTVVVTDRGRLFGFGDNERAQLGHD-T-LRGCLEPTEIFIQE 367 (375)
Q Consensus 316 ~~~i~~i~~G~~h~~~l~~~g~v~~wG~n~~gqlG~g-~-~~~~~~p~~v~~~~ 367 (375)
..++.++.|+..|.++-.+ ....+||...+|-++-+ + ......|..++.-.
T Consensus 327 gwnl~~~~~~~~h~~v~ad-~s~i~wg~~~~g~~lggp~~Qkss~~Pk~v~~l~ 379 (443)
T KOG1427|consen 327 GWNLRWMDSGSMHHFVGAD-SSCISWGHAQYGELLGGPNGQKSSAAPKKVDMLE 379 (443)
T ss_pred CccCCCcCccceeeeeccc-ccccccccccccccccCccccccccCccccchhc
Confidence 9999999999988776554 57999999887665543 3 34455666555433
No 4
>KOG1427 consensus Uncharacterized conserved protein, contains RCC1 domain [Function unknown]
Probab=100.00 E-value=2.6e-43 Score=293.38 Aligned_cols=320 Identities=28% Similarity=0.397 Sum_probs=271.6
Q ss_pred ecCCeeEEE-eCCcEEEEeCCCCCccCCCCCCCeeeeeeeecCCCCCCEEEEecCCceEEEEEcCCcEEEeeCCCCCccc
Q 017198 5 TGRYHTLLI-SNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSASENHAAFVLQSGQVFTCGDNSSFCCG 83 (375)
Q Consensus 5 ~G~~~~~~l-~~g~l~~wG~n~~g~Lg~~~~~~~~~~~~~~~~~~~~~i~~i~~g~~~~~~lt~~g~vy~~G~n~~gqlg 83 (375)
|...|+++| -++++|.||.|..||||.++... ...|+-+.-....+|++-+||++|+++||++|.+|.||.|.+||||
T Consensus 65 ~~aaH~vli~megk~~~wGRNekGQLGhgD~k~-~e~Ptvi~gL~~~~iv~AA~GrnHTl~ltdtG~v~afGeNK~GQlG 143 (443)
T KOG1427|consen 65 CAAAHCVLIDMEGKCYTWGRNEKGQLGHGDMKQ-RERPTVISGLSKHKIVKAAAGRNHTLVLTDTGQVLAFGENKYGQLG 143 (443)
T ss_pred cchhhEEEEecccceeecccCccCccCccchhh-ccCCchhhhhhhhhHHHHhhccCcEEEEecCCcEEEeccccccccc
Confidence 347899999 99999999999999999995544 6678888777777999999999999999999999999999999999
Q ss_pred CCCCCCceecCEEccccCCcCeEEEEccCCeEEEEEcCCCEEEEeCCCCCcccCCCCCCC--------------Ccceee
Q 017198 84 HRDTNRPIFRPRLVEALKGVPCKQVTAGLNFTGFLTIRGHVHTCGSNTHGQLGHGDTLDR--------------PTPKSI 149 (375)
Q Consensus 84 ~~~~~~~~~~p~~i~~~~~~~i~~v~~g~~~~~~lt~~g~v~~~G~n~~g~lg~~~~~~~--------------~~p~~~ 149 (375)
.++....+..|.++- ..+.+|..|+||..|++.|+..+.+...|.-.+||||+++.... +.|..+
T Consensus 144 lgn~~~~v~s~~~~~-~~~~~v~~v~cga~ftv~l~~~~si~t~glp~ygqlgh~td~~~~~~~~~~~~~~e~~pr~~~i 222 (443)
T KOG1427|consen 144 LGNAKNEVESTPLPC-VVSDEVTNVACGADFTVWLSSTESILTAGLPQYGQLGHGTDNEFNMKDSSVRLAYEAQPRPKAI 222 (443)
T ss_pred ccccccccccCCCcc-ccCccceeeccccceEEEeecccceeecCCccccccccCcchhhccccccceeeeecCCCcccc
Confidence 999776555554443 33457999999999999999999999999999999998866432 234445
Q ss_pred cCCCCCCCEEEEEeCCCeEEEEECCCcEEEEeCCCCCccCCCCCCCccCceeeeccccCCccEEEEEcCCCeEEEEeCCC
Q 017198 150 APLEEVGSVVQIAAGPSYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGDEHVVALDSSG 229 (375)
Q Consensus 150 ~~~~~~~~i~~i~~g~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~p~~i~~~~~~~~~i~~i~~g~~~~~~lt~~g 229 (375)
..+.. ..|++++||.+|+++++++++||+||...||.||+.+..+...|+.++.|+....--..+.||+..++.+.+-|
T Consensus 223 ~~~dg-vqiv~~acg~nhtvavd~nkrVysWGFGGyGRLGHaEqKDEmvpRlik~Fd~~~rg~~~~~~g~t~Sl~v~e~G 301 (443)
T KOG1427|consen 223 ASLDG-VQIVKVACGTNHTVAVDKNKRVYSWGFGGYGRLGHAEQKDEMVPRLIKVFDRNNRGPPNAILGYTGSLNVAEGG 301 (443)
T ss_pred ccccc-eeeEEEeccCcceeeecCCccEEEeccccccccccccchhhHHHHHHHHhcCCCCCCcceeeecccceeecccc
Confidence 45443 78999999999999999999999999999999999999999999999999887777889999999999999999
Q ss_pred CEEEEeCCCCCCCCCCCCCCcccCeeccCCCCCceEEEEecCCcEEEEEcCCcEEEEeCCCCCCCCCCCCCCCCceecce
Q 017198 230 YVYTWGKGYCGALGHGDEIDKTLPEPLSSLKSHLAVQVCARKRKTFVLVDTGSVYGFGWMGFGSLGFPDRGVSDKVLRPR 309 (375)
Q Consensus 230 ~v~~~G~n~~gqlg~~~~~~~~~p~~i~~~~~~~i~~i~~g~~~~~~l~~~g~vy~~G~n~~gqlg~~~~~~~~~~~~p~ 309 (375)
.+|.||.+.. .......|.++..+...++..+.|+..|.++ ..|.....||...++.+.-+. ........|.
T Consensus 302 ~Lf~~g~~k~------~ge~~mypkP~~dlsgwnl~~~~~~~~h~~v-~ad~s~i~wg~~~~g~~lggp-~~Qkss~~Pk 373 (443)
T KOG1427|consen 302 QLFMWGKIKN------NGEDWMYPKPMMDLSGWNLRWMDSGSMHHFV-GADSSCISWGHAQYGELLGGP-NGQKSSAAPK 373 (443)
T ss_pred eeEEeecccc------CcccccCCCchhhcCCccCCCcCccceeeee-cccccccccccccccccccCc-cccccccCcc
Confidence 9999998652 2244668999999999999999999888665 566678899988776654432 1244556789
Q ss_pred EcCccCCCcEEEEEeCCCceEEEEcC
Q 017198 310 ILDSLRAHHVSQISTGLYHTVVVTDR 335 (375)
Q Consensus 310 ~~~~~~~~~i~~i~~G~~h~~~l~~~ 335 (375)
.++.+.+..+-+|++|+.|+++|.++
T Consensus 374 ~v~~l~~i~v~~VamGysHs~vivd~ 399 (443)
T KOG1427|consen 374 KVDMLEGIHVMGVAMGYSHSMVIVDR 399 (443)
T ss_pred ccchhcceeccceeeccceEEEEEcc
Confidence 99999999999999999999999876
No 5
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=99.96 E-value=6.9e-29 Score=231.54 Aligned_cols=301 Identities=23% Similarity=0.274 Sum_probs=227.8
Q ss_pred eCCcEEEEeCCCCCccCCCCCCCeeeeeeeecCCCCC--CEEEEecCCceEEEEEcCCcEEEeeCCCCCcccCCCCCCce
Q 017198 14 SNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAA--HVVQVSASENHAAFVLQSGQVFTCGDNSSFCCGHRDTNRPI 91 (375)
Q Consensus 14 ~~g~l~~wG~n~~g~Lg~~~~~~~~~~~~~~~~~~~~--~i~~i~~g~~~~~~lt~~g~vy~~G~n~~gqlg~~~~~~~~ 91 (375)
.-+.||+||.|.+.-||+++..+ ...|+.+.+.... =+.+|+.+..|++++++.|+||+||....|.||+++. ...
T Consensus 140 ~pndvy~wG~N~N~tLGign~~~-~~~Pe~Vdlf~~Sg~~~~qV~l~kfHSvfl~~kgqvY~cGhG~GGRlG~gde-q~~ 217 (1267)
T KOG0783|consen 140 LPNDVYGWGTNVNNTLGIGNGKE-PSSPERVDLFKTSGQLFSQVQLSKFHSVFLTEKGQVYVCGHGAGGRLGFGDE-QYN 217 (1267)
T ss_pred CccceeEecccccccccccCCCC-CCChHHhHHHHhccHHHHHHHHhhceeeEecCCCcEEEeccCCCCccCcCcc-ccc
Confidence 55789999999999999999888 6678888876544 5788999999999999999999999999999999955 568
Q ss_pred ecCEEccccCCcCeEEEEccCCeEEEEEcCCCEEEEeCCCCCcccCCCCCC-CCcceeecCCC--CCCCEEEEEeCCCeE
Q 017198 92 FRPRLVEALKGVPCKQVTAGLNFTGFLTIRGHVHTCGSNTHGQLGHGDTLD-RPTPKSIAPLE--EVGSVVQIAAGPSYM 168 (375)
Q Consensus 92 ~~p~~i~~~~~~~i~~v~~g~~~~~~lt~~g~v~~~G~n~~g~lg~~~~~~-~~~p~~~~~~~--~~~~i~~i~~g~~~~ 168 (375)
..|++++.+.+-+|.+|+....|+++||++|.||+||.|...|||..+... ...|.++.... ....|+-+++|..|+
T Consensus 218 ~iPkrV~gL~gh~~~qisvs~~HslvLT~~g~Vys~GlN~~hqLG~~~~~~~~~~p~qI~a~r~kg~~~iIgvaAg~~hs 297 (1267)
T KOG0783|consen 218 FIPKRVPGLIGHKVIQISVSHTHSLVLTKFGSVYSWGLNGSHQLGLSNDELKKDDPIQITARRIKGFKQIIGVAAGKSHS 297 (1267)
T ss_pred ccccccccccccceEEEEeecceeEEEeecceEEEeecCcccccCCcCchhhcCchhhhhhHhhcchhhhhhhhccccee
Confidence 889999999999999999999999999999999999999999999876543 34555554432 225799999999999
Q ss_pred EEEECCCcEEEEeCCCCCccCCCCCCC-ccCceeeeccccCCccEEEEEcCCCeEEEEeCCCCEEEEeCCCCCCCCCCCC
Q 017198 169 LAVTGNGVVYSFGSGSNFCLGHGEQHD-ELQPRAIQTFRRKGIHVVRVSAGDEHVVALDSSGYVYTWGKGYCGALGHGDE 247 (375)
Q Consensus 169 ~~lt~~g~v~~~G~n~~gqlg~~~~~~-~~~p~~i~~~~~~~~~i~~i~~g~~~~~~lt~~g~v~~~G~n~~gqlg~~~~ 247 (375)
++.++. .||+||.|. ||||..++.. ...|+.+.. ....|..+.|....+++++.++.+|++-+-. |.-....
T Consensus 298 Vawt~~-~VY~wGlN~-GQlGi~~n~~~Vt~Pr~l~~---~~~~v~~v~a~~~ATVc~~~~~~i~~~ady~--~~k~~~n 370 (1267)
T KOG0783|consen 298 VAWTDT-DVYSWGLNN-GQLGISDNISVVTTPRRLAG---LLSPVIHVVATTRATVCLLQNNSIIAFADYN--QVKLPFN 370 (1267)
T ss_pred eeeecc-eEEEecccC-ceecCCCCCceeecchhhcc---cccceEEEEecCccEEEEecCCcEEEEeccc--ceecCcc
Confidence 999955 699999976 8999876643 456765543 3347999999999999999999999987522 2111111
Q ss_pred CCcccCeeccC----CCCCceEEEEecCCcEEEEEcCCcEEEEeCCCCCCCCCCCCCCCCceecceEcCccCCCcEEEEE
Q 017198 248 IDKTLPEPLSS----LKSHLAVQVCARKRKTFVLVDTGSVYGFGWMGFGSLGFPDRGVSDKVLRPRILDSLRAHHVSQIS 323 (375)
Q Consensus 248 ~~~~~p~~i~~----~~~~~i~~i~~g~~~~~~l~~~g~vy~~G~n~~gqlg~~~~~~~~~~~~p~~~~~~~~~~i~~i~ 323 (375)
.......++.. .....+.+..+.....+++++-|+||+|-+++... ......|..+- .|.+|+
T Consensus 371 ~~~lks~~V~gg~l~~~~~~~~k~~a~~~kll~lte~g~Vy~w~s~ns~~--------~~c~ftp~r~~-----~isdIa 437 (1267)
T KOG0783|consen 371 VDFLKSLKVTGGPLSLTRFNVRKLLASENKLLVLTELGEVYEWDSKNSTR--------TSCKFTPLRIF-----EISDIA 437 (1267)
T ss_pred hhccceeEEecCccchhhhhhhhcchhhhheeeeccCCeEEEEecCCCce--------eeeecccceee-----ehhhhh
Confidence 11111111111 01123445556667778999999999999764321 12233343332 466787
Q ss_pred eCCCceEEEEcCC
Q 017198 324 TGLYHTVVVTDRG 336 (375)
Q Consensus 324 ~G~~h~~~l~~~g 336 (375)
--.+..+++++||
T Consensus 438 ~~~N~~~~~t~dG 450 (1267)
T KOG0783|consen 438 WTANSLILCTRDG 450 (1267)
T ss_pred hccceEEEEecCc
Confidence 7778889999999
No 6
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=99.96 E-value=3e-27 Score=228.91 Aligned_cols=324 Identities=18% Similarity=0.223 Sum_probs=227.4
Q ss_pred CeeeecCCeeEEE-eCCcEEEEeCCCCCccCCCCCCCeeeeeeeecCCCCCCEEEEecCCceEEEEEcCCcEEEeeCCCC
Q 017198 1 MQITTGRYHTLLI-SNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSASENHAAFVLQSGQVFTCGDNSS 79 (375)
Q Consensus 1 v~i~~G~~~~~~l-~~g~l~~wG~n~~g~Lg~~~~~~~~~~~~~~~~~~~~~i~~i~~g~~~~~~lt~~g~vy~~G~n~~ 79 (375)
|++-.+++++++- ++|+||.-|... .+|+..... .+..+.+++ +|++|+.|-+.++++.-.|.=|.+-..+.
T Consensus 482 v~L~~~RE~A~iqa~sGKvYYaGn~t--~~Gl~e~G~---nWmEL~l~~--~IVq~SVG~D~~~~~~~A~~G~I~~v~D~ 554 (3738)
T KOG1428|consen 482 VDLHFTREMAFIQARSGKVYYAGNGT--RFGLFETGN---NWMELCLPE--PIVQISVGIDTIMFRSGAGHGWIASVDDK 554 (3738)
T ss_pred eecccchhhhhhhhcCccEEEecCcc--EEeEEccCC---ceEEecCCC--ceEEEEeccchhheeeccCcceEEeccCc
Confidence 4566788888888 999999999765 577755554 455666664 99999999999888887666555433321
Q ss_pred CcccCCCCCCceecCEEccccCCcCeEEEEccCCeEEEEEcCCCEEEEeCCCCCcccCCCCCCCCcceeecCCCCCCCEE
Q 017198 80 FCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGLNFTGFLTIRGHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVV 159 (375)
Q Consensus 80 gqlg~~~~~~~~~~p~~i~~~~~~~i~~v~~g~~~~~~lt~~g~v~~~G~n~~g~lg~~~~~~~~~p~~~~~~~~~~~i~ 159 (375)
.....-+++...+..+|+.+.+...-.-.++++|++|+.|..... ......++..++. .-|.
T Consensus 555 ---------k~~~~~Rr~~P~n~rKIv~v~~s~~VY~~vSenGkifM~G~~tm~--------~n~SSqmln~L~~-~~is 616 (3738)
T KOG1428|consen 555 ---------KRNGRLRRLVPSNRRKIVHVCASGHVYGYVSENGKIFMGGLHTMR--------VNVSSQMLNGLDN-VMIS 616 (3738)
T ss_pred ---------ccccchhhcCCCCcceeEEEeeeeEEEEEEccCCeEEeecceeEE--------ecchHHHhhcccc-ceee
Confidence 111222333334455788887765556689999999999875321 1112233444433 5689
Q ss_pred EEEeCCCeEEEEECCCcEEEEeCCCCCccCCCCCCCccCceeeeccc------------cCCccEEEEEcCCCeEEEE--
Q 017198 160 QIAAGPSYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFR------------RKGIHVVRVSAGDEHVVAL-- 225 (375)
Q Consensus 160 ~i~~g~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~p~~i~~~~------------~~~~~i~~i~~g~~~~~~l-- 225 (375)
+++.|..|+++++++|+||+||.|..+|+|.-+............-. .....-+.-.||.-....+
T Consensus 617 slAlGKsH~~av~rNG~l~T~GlNN~~QCGRVEs~sTt~s~~~s~~~e~~iCP~G~HtW~~dt~~VCa~CG~Cs~~GvaC 696 (3738)
T KOG1428|consen 617 SLALGKSHGVAVTRNGHLFTWGLNNMNQCGRVESTSTTSSPRHSGRQEYQICPIGEHTWLTDTPSVCAQCGLCSARGVAC 696 (3738)
T ss_pred hhhccccceeEEEeCCeEEEEecCCcccccccccccccCCcccccceeecccCCccceeecCCcchhhhccccccccccc
Confidence 99999999999999999999999999999986654433222221110 0111222333433222111
Q ss_pred ----eCCCCEEEEeCCCCCCCCCCCCC---------------------------CcccCeecc---CCCCCceEEEEecC
Q 017198 226 ----DSSGYVYTWGKGYCGALGHGDEI---------------------------DKTLPEPLS---SLKSHLAVQVCARK 271 (375)
Q Consensus 226 ----t~~g~v~~~G~n~~gqlg~~~~~---------------------------~~~~p~~i~---~~~~~~i~~i~~g~ 271 (375)
...|.+..+|.+..+.+-.|--. ....|..+. ...+.++.+|+||.
T Consensus 697 ~~~~RP~G~mC~CG~GES~C~~CG~Cr~C~e~tE~~QPG~aqHvQ~~staa~QR~~~HPs~V~~sq~~Hdvkv~sVSCG~ 776 (3738)
T KOG1428|consen 697 GRVPRPKGTMCHCGVGESTCLRCGLCRPCGEVTEPAQPGRAQHVQFSSTAAPQRSTLHPSRVILSQGPHDVKVSSVSCGN 776 (3738)
T ss_pred ccCCCCCCcccccCCCcccceeccccccccCcCCcCCCCHHHhheecccccccccccCchheeeccCCcceeEEEEeccC
Confidence 24677888888776655433110 011222221 33455799999999
Q ss_pred CcEEEEEcCCcEEEEeCCCCCCCCCCCCCCCCceecceEcCccCCCcEEEEEeCCCceEEEEcCCCEEEeeCCCCCCCCc
Q 017198 272 RKTFVLVDTGSVYGFGWMGFGSLGFPDRGVSDKVLRPRILDSLRAHHVSQISTGLYHTVVVTDRGRLFGFGDNERAQLGH 351 (375)
Q Consensus 272 ~~~~~l~~~g~vy~~G~n~~gqlg~~~~~~~~~~~~p~~~~~~~~~~i~~i~~G~~h~~~l~~~g~v~~wG~n~~gqlG~ 351 (375)
+|+++|.+|++||.+|+|.+||||.++ ......|+.+..+.+..+++|++|++|++++..||.||++|.-.+|||+.
T Consensus 777 ~HtVlL~sd~~VfTFG~~~HGQLG~GD---t~Sk~~Pq~V~~~~~t~~vQVaAGSNHT~l~~~DGsVFTFGaF~KGQL~R 853 (3738)
T KOG1428|consen 777 FHTVLLASDRRVFTFGSNCHGQLGVGD---TLSKNTPQQVILPSDTVIVQVAAGSNHTILRANDGSVFTFGAFGKGQLAR 853 (3738)
T ss_pred ceEEEEecCCcEEEecCCcccccCcCc---cccCCCcceEEcCCCCceEEEecCCCceEEEecCCcEEEeccccCccccC
Confidence 999999999999999999999999987 44567799999889999999999999999999999999999999999998
Q ss_pred C
Q 017198 352 D 352 (375)
Q Consensus 352 g 352 (375)
.
T Consensus 854 P 854 (3738)
T KOG1428|consen 854 P 854 (3738)
T ss_pred c
Confidence 5
No 7
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=99.94 E-value=7.2e-27 Score=218.17 Aligned_cols=273 Identities=28% Similarity=0.405 Sum_probs=210.5
Q ss_pred EEEEcCCcEEEeeCCCCCcccCCCCCCceecCEEccccC--CcCeEEEEccCCeEEEEEcCCCEEEEeCCCCCcccCCCC
Q 017198 63 AFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALK--GVPCKQVTAGLNFTGFLTIRGHVHTCGSNTHGQLGHGDT 140 (375)
Q Consensus 63 ~~lt~~g~vy~~G~n~~gqlg~~~~~~~~~~p~~i~~~~--~~~i~~v~~g~~~~~~lt~~g~v~~~G~n~~g~lg~~~~ 140 (375)
.+++.-..||.||.|....||+++... ...|+.+..+. +.-+.+|..+.+|++++++.|+||+||...-|.||.+..
T Consensus 136 ~~~d~pndvy~wG~N~N~tLGign~~~-~~~Pe~Vdlf~~Sg~~~~qV~l~kfHSvfl~~kgqvY~cGhG~GGRlG~gde 214 (1267)
T KOG0783|consen 136 PVLDLPNDVYGWGTNVNNTLGIGNGKE-PSSPERVDLFKTSGQLFSQVQLSKFHSVFLTEKGQVYVCGHGAGGRLGFGDE 214 (1267)
T ss_pred cccCCccceeEecccccccccccCCCC-CCChHHhHHHHhccHHHHHHHHhhceeeEecCCCcEEEeccCCCCccCcCcc
Confidence 344555789999999999999998754 66787777654 445788999999999999999999999999999999998
Q ss_pred CCCCcceeecCCCCCCCEEEEEeCCCeEEEEECCCcEEEEeCCCCCccCCCCCC-CccCceeeeccccCCc-cEEEEEcC
Q 017198 141 LDRPTPKSIAPLEEVGSVVQIAAGPSYMLAVTGNGVVYSFGSGSNFCLGHGEQH-DELQPRAIQTFRRKGI-HVVRVSAG 218 (375)
Q Consensus 141 ~~~~~p~~~~~~~~~~~i~~i~~g~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~-~~~~p~~i~~~~~~~~-~i~~i~~g 218 (375)
...+.|..++.+.. .++.+|++...|+++||++|.||+||.|...|||..+.. ....|.++......+. .|+-+++|
T Consensus 215 q~~~iPkrV~gL~g-h~~~qisvs~~HslvLT~~g~Vys~GlN~~hqLG~~~~~~~~~~p~qI~a~r~kg~~~iIgvaAg 293 (1267)
T KOG0783|consen 215 QYNFIPKRVPGLIG-HKVIQISVSHTHSLVLTKFGSVYSWGLNGSHQLGLSNDELKKDDPIQITARRIKGFKQIIGVAAG 293 (1267)
T ss_pred cccccccccccccc-cceEEEEeecceeEEEeecceEEEeecCcccccCCcCchhhcCchhhhhhHhhcchhhhhhhhcc
Confidence 88899999998755 899999999999999999999999999999999987653 3455666654433333 79999999
Q ss_pred CCeEEEEeCCCCEEEEeCCCCCCCCCCCCCC-cccCeeccCCCCCceEEEEecCCcEEEEEcCCcEEEEeCCCCCCCCCC
Q 017198 219 DEHVVALDSSGYVYTWGKGYCGALGHGDEID-KTLPEPLSSLKSHLAVQVCARKRKTFVLVDTGSVYGFGWMGFGSLGFP 297 (375)
Q Consensus 219 ~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~-~~~p~~i~~~~~~~i~~i~~g~~~~~~l~~~g~vy~~G~n~~gqlg~~ 297 (375)
..|+++.++. .||+||.| .||||..+... ..+|..+ .....++..|+|.+.-++++++++.+|++-.-+..-+-..
T Consensus 294 ~~hsVawt~~-~VY~wGlN-~GQlGi~~n~~~Vt~Pr~l-~~~~~~v~~v~a~~~ATVc~~~~~~i~~~ady~~~k~~~n 370 (1267)
T KOG0783|consen 294 KSHSVAWTDT-DVYSWGLN-NGQLGISDNISVVTTPRRL-AGLLSPVIHVVATTRATVCLLQNNSIIAFADYNQVKLPFN 370 (1267)
T ss_pred cceeeeeecc-eEEEeccc-CceecCCCCCceeecchhh-cccccceEEEEecCccEEEEecCCcEEEEecccceecCcc
Confidence 9999999987 49999997 59999776644 3466555 3345579999999999999999999999764222211111
Q ss_pred CCCCCCceecceEcC----ccCCCcEEEEEeCCCceEEEEcCCCEEEeeCCC
Q 017198 298 DRGVSDKVLRPRILD----SLRAHHVSQISTGLYHTVVVTDRGRLFGFGDNE 345 (375)
Q Consensus 298 ~~~~~~~~~~p~~~~----~~~~~~i~~i~~G~~h~~~l~~~g~v~~wG~n~ 345 (375)
. .......+. .+...++.+..+...-.+++++-|+||.|=.++
T Consensus 371 ~-----~~lks~~V~gg~l~~~~~~~~k~~a~~~kll~lte~g~Vy~w~s~n 417 (1267)
T KOG0783|consen 371 V-----DFLKSLKVTGGPLSLTRFNVRKLLASENKLLVLTELGEVYEWDSKN 417 (1267)
T ss_pred h-----hccceeEEecCccchhhhhhhhcchhhhheeeeccCCeEEEEecCC
Confidence 0 011111111 111235556666677788999999999997553
No 8
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=99.88 E-value=6.8e-21 Score=185.52 Aligned_cols=271 Identities=25% Similarity=0.374 Sum_probs=184.5
Q ss_pred CCEEEEecCCceEEEEEcCCcEEEeeCCCCCcccCCCCCCceecCEEccccCCcCeEEEEccCCeEEEEEcCCCEEEEeC
Q 017198 50 AHVVQVSASENHAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGLNFTGFLTIRGHVHTCGS 129 (375)
Q Consensus 50 ~~i~~i~~g~~~~~~lt~~g~vy~~G~n~~gqlg~~~~~~~~~~p~~i~~~~~~~i~~v~~g~~~~~~lt~~g~v~~~G~ 129 (375)
.+|+.|.+...-.-++.+||++|+.|.... .....-..+..+++.-|.+++.|..|.++++++|+||.||.
T Consensus 569 rKIv~v~~s~~VY~~vSenGkifM~G~~tm---------~~n~SSqmln~L~~~~isslAlGKsH~~av~rNG~l~T~Gl 639 (3738)
T KOG1428|consen 569 RKIVHVCASGHVYGYVSENGKIFMGGLHTM---------RVNVSSQMLNGLDNVMISSLALGKSHGVAVTRNGHLFTWGL 639 (3738)
T ss_pred ceeEEEeeeeEEEEEEccCCeEEeecceeE---------EecchHHHhhccccceeehhhccccceeEEEeCCeEEEEec
Confidence 389998887777788999999999987652 11122345566778889999999999999999999999999
Q ss_pred CCCCcccCCCCCCCC-cce-------eecCC-----CCCCCEEEEEeCCC--eEEEE----ECCCcEEEEeCCCCCccCC
Q 017198 130 NTHGQLGHGDTLDRP-TPK-------SIAPL-----EEVGSVVQIAAGPS--YMLAV----TGNGVVYSFGSGSNFCLGH 190 (375)
Q Consensus 130 n~~g~lg~~~~~~~~-~p~-------~~~~~-----~~~~~i~~i~~g~~--~~~~l----t~~g~v~~~G~n~~gqlg~ 190 (375)
|+.+|+|.-...... .|. ++-.+ .-...-+-..||.- +.++- .-.|.+-.+|..+.+++--
T Consensus 640 NN~~QCGRVEs~sTt~s~~~s~~~e~~iCP~G~HtW~~dt~~VCa~CG~Cs~~GvaC~~~~RP~G~mC~CG~GES~C~~C 719 (3738)
T KOG1428|consen 640 NNMNQCGRVESTSTTSSPRHSGRQEYQICPIGEHTWLTDTPSVCAQCGLCSARGVACGRVPRPKGTMCHCGVGESTCLRC 719 (3738)
T ss_pred CCcccccccccccccCCcccccceeecccCCccceeecCCcchhhhcccccccccccccCCCCCCcccccCCCcccceec
Confidence 999999965332211 110 01000 00011111222211 11111 1134455555544333211
Q ss_pred C--------CC-------------------CCccCceeeec-cccCCccEEEEEcCCCeEEEEeCCCCEEEEeCCCCCCC
Q 017198 191 G--------EQ-------------------HDELQPRAIQT-FRRKGIHVVRVSAGDEHVVALDSSGYVYTWGKGYCGAL 242 (375)
Q Consensus 191 ~--------~~-------------------~~~~~p~~i~~-~~~~~~~i~~i~~g~~~~~~lt~~g~v~~~G~n~~gql 242 (375)
+ .. .....|..+.. -.....++.+++||..|+++|-+|++||.+|+|-+|||
T Consensus 720 G~Cr~C~e~tE~~QPG~aqHvQ~~staa~QR~~~HPs~V~~sq~~Hdvkv~sVSCG~~HtVlL~sd~~VfTFG~~~HGQL 799 (3738)
T KOG1428|consen 720 GLCRPCGEVTEPAQPGRAQHVQFSSTAAPQRSTLHPSRVILSQGPHDVKVSSVSCGNFHTVLLASDRRVFTFGSNCHGQL 799 (3738)
T ss_pred cccccccCcCCcCCCCHHHhheecccccccccccCchheeeccCCcceeEEEEeccCceEEEEecCCcEEEecCCccccc
Confidence 1 00 01112222221 12245689999999999999999999999999999999
Q ss_pred CCCCCCCcccCeeccCCCCCceEEEEecCCcEEEEEcCCcEEEEeCCCCCCCCCCCCCCCCceecceEcCccC---CCcE
Q 017198 243 GHGDEIDKTLPEPLSSLKSHLAVQVCARKRKTFVLVDTGSVYGFGWMGFGSLGFPDRGVSDKVLRPRILDSLR---AHHV 319 (375)
Q Consensus 243 g~~~~~~~~~p~~i~~~~~~~i~~i~~g~~~~~~l~~~g~vy~~G~n~~gqlg~~~~~~~~~~~~p~~~~~~~---~~~i 319 (375)
|.|+......|+++..+.+..+++|++|.+|++++..||.||.+|.-..|||+.+......--..|.+++.+- +...
T Consensus 800 G~GDt~Sk~~Pq~V~~~~~t~~vQVaAGSNHT~l~~~DGsVFTFGaF~KGQL~RP~~e~~~WNA~Pe~v~~~G~~f~~~A 879 (3738)
T KOG1428|consen 800 GVGDTLSKNTPQQVILPSDTVIVQVAAGSNHTILRANDGSVFTFGAFGKGQLARPAGEKAGWNAIPEKVSGFGPGFNAFA 879 (3738)
T ss_pred CcCccccCCCcceEEcCCCCceEEEecCCCceEEEecCCcEEEeccccCccccCccccccccccCCCcCCCCCccccccc
Confidence 9999999999999999999899999999999999999999999999999999998655444455677777543 2344
Q ss_pred EEEEeCCCce
Q 017198 320 SQISTGLYHT 329 (375)
Q Consensus 320 ~~i~~G~~h~ 329 (375)
-+|-+....+
T Consensus 880 ~WIGAdGDss 889 (3738)
T KOG1428|consen 880 GWIGADGDSS 889 (3738)
T ss_pred eeeccCCCcc
Confidence 4554443333
No 9
>PF00415 RCC1: Regulator of chromosome condensation (RCC1) repeat; InterPro: IPR000408 The regulator of chromosome condensation (RCC1) [] is a eukaryotic protein which binds to chromatin and interacts with ran, a nuclear GTP-binding protein IPR002041 from INTERPRO, to promote the loss of bound GDP and the uptake of fresh GTP, thus acting as a guanine-nucleotide dissociation stimulator (GDS). The interaction of RCC1 with ran probably plays an important role in the regulation of gene expression. RCC1, known as PRP20 or SRM1 in yeast, pim1 in fission yeast and BJ1 in Drosophila, is a protein that contains seven tandem repeats of a domain of about 50 to 60 amino acids. As shown in the following schematic representation, the repeats make up the major part of the length of the protein. Outside the repeat region, there is just a small N-terminal domain of about 40 to 50 residues and, in the Drosophila protein only, a C-terminal domain of about 130 residues. +----+-------+-------+-------+-------+-------+-------+-------+-------------+ |N-t.|Rpt. 1 |Rpt. 2 |Rpt. 3 |Rpt. 4 |Rpt. 5 |Rpt. 6 |Rpt. 7 | C-terminal | +----+-------+-------+-------+-------+-------+-------+-------+-------------+ The RCC1-type of repeat is also found in the X-linked retinitis pigmentosa GTPase regulator []. The RCC repeats form a beta-propeller structure.; PDB: 3MVD_L 3OF7_A 1I2M_D 1A12_B 3KCI_A 4DNV_B 4DNU_A 4D9S_B 4DNW_A.
Probab=99.29 E-value=3.2e-12 Score=82.30 Aligned_cols=50 Identities=34% Similarity=0.599 Sum_probs=47.2
Q ss_pred CCCEEEEeCCCCCCCC-CCCCCCcccCeeccCCCCCceEEEEecCCcEEEE
Q 017198 228 SGYVYTWGKGYCGALG-HGDEIDKTLPEPLSSLKSHLAVQVCARKRKTFVL 277 (375)
Q Consensus 228 ~g~v~~~G~n~~gqlg-~~~~~~~~~p~~i~~~~~~~i~~i~~g~~~~~~l 277 (375)
||+||+||.|.+|||| .+.......|++++.+...+|++|+||.+|+++|
T Consensus 1 dG~vy~wG~n~~GqLG~~~~~~~~~~P~~v~~~~~~~i~~va~G~~ht~~l 51 (51)
T PF00415_consen 1 DGRVYSWGSNDYGQLGSGGDNKNVSVPTKVPFLSGVRIVQVACGSDHTLAL 51 (51)
T ss_dssp TSEEEEEEEETTSTTSSSSSSSEEEEEEEEGGGTTSEEEEEEEESSEEEEE
T ss_pred CCcEEEEECCCCCCCCCCCCCCceeEEEEECCCCCCCEEEEEeCcceEEEC
Confidence 6899999999999999 8888888999999999999999999999999986
No 10
>PF00415 RCC1: Regulator of chromosome condensation (RCC1) repeat; InterPro: IPR000408 The regulator of chromosome condensation (RCC1) [] is a eukaryotic protein which binds to chromatin and interacts with ran, a nuclear GTP-binding protein IPR002041 from INTERPRO, to promote the loss of bound GDP and the uptake of fresh GTP, thus acting as a guanine-nucleotide dissociation stimulator (GDS). The interaction of RCC1 with ran probably plays an important role in the regulation of gene expression. RCC1, known as PRP20 or SRM1 in yeast, pim1 in fission yeast and BJ1 in Drosophila, is a protein that contains seven tandem repeats of a domain of about 50 to 60 amino acids. As shown in the following schematic representation, the repeats make up the major part of the length of the protein. Outside the repeat region, there is just a small N-terminal domain of about 40 to 50 residues and, in the Drosophila protein only, a C-terminal domain of about 130 residues. +----+-------+-------+-------+-------+-------+-------+-------+-------------+ |N-t.|Rpt. 1 |Rpt. 2 |Rpt. 3 |Rpt. 4 |Rpt. 5 |Rpt. 6 |Rpt. 7 | C-terminal | +----+-------+-------+-------+-------+-------+-------+-------+-------------+ The RCC1-type of repeat is also found in the X-linked retinitis pigmentosa GTPase regulator []. The RCC repeats form a beta-propeller structure.; PDB: 3MVD_L 3OF7_A 1I2M_D 1A12_B 3KCI_A 4DNV_B 4DNU_A 4D9S_B 4DNW_A.
Probab=99.26 E-value=1e-11 Score=79.91 Aligned_cols=51 Identities=29% Similarity=0.481 Sum_probs=45.8
Q ss_pred CCcEEEEeCCCCCccCCCCCCCeeeeeeeecCCCCCCEEEEecCCceEEEE
Q 017198 15 NSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSASENHAAFV 65 (375)
Q Consensus 15 ~g~l~~wG~n~~g~Lg~~~~~~~~~~~~~~~~~~~~~i~~i~~g~~~~~~l 65 (375)
||+||+||.|.+||||..........|+++..+...+|++|+||..|+++|
T Consensus 1 dG~vy~wG~n~~GqLG~~~~~~~~~~P~~v~~~~~~~i~~va~G~~ht~~l 51 (51)
T PF00415_consen 1 DGRVYSWGSNDYGQLGSGGDNKNVSVPTKVPFLSGVRIVQVACGSDHTLAL 51 (51)
T ss_dssp TSEEEEEEEETTSTTSSSSSSSEEEEEEEEGGGTTSEEEEEEEESSEEEEE
T ss_pred CCcEEEEECCCCCCCCCCCCCCceeEEEEECCCCCCCEEEEEeCcceEEEC
Confidence 799999999999999955555558899999999888999999999999987
No 11
>PF13540 RCC1_2: Regulator of chromosome condensation (RCC1) repeat; PDB: 3QI0_D 1JTD_B 3QHY_B.
Probab=99.25 E-value=8.5e-12 Score=69.69 Aligned_cols=30 Identities=43% Similarity=0.730 Sum_probs=26.0
Q ss_pred EEEEEeCCCceEEEEcCCCEEEeeCCCCCC
Q 017198 319 VSQISTGLYHTVVVTDRGRLFGFGDNERAQ 348 (375)
Q Consensus 319 i~~i~~G~~h~~~l~~~g~v~~wG~n~~gq 348 (375)
|++|+||.+|+++|+++|+||+||+|.+||
T Consensus 1 V~~ia~G~~ht~al~~~g~v~~wG~n~~GQ 30 (30)
T PF13540_consen 1 VVQIACGGYHTCALTSDGEVYCWGDNNYGQ 30 (30)
T ss_dssp EEEEEEESSEEEEEE-TTEEEEEE--TTST
T ss_pred CEEEEecCCEEEEEEcCCCEEEEcCCcCCC
Confidence 689999999999999999999999999998
No 12
>PF13540 RCC1_2: Regulator of chromosome condensation (RCC1) repeat; PDB: 3QI0_D 1JTD_B 3QHY_B.
Probab=99.15 E-value=6.6e-11 Score=66.08 Aligned_cols=30 Identities=30% Similarity=0.494 Sum_probs=25.8
Q ss_pred eEEEEecCCcEEEEEcCCcEEEEeCCCCCC
Q 017198 264 AVQVCARKRKTFVLVDTGSVYGFGWMGFGS 293 (375)
Q Consensus 264 i~~i~~g~~~~~~l~~~g~vy~~G~n~~gq 293 (375)
|++|+||.+|+++|+++|+||+||.|.+||
T Consensus 1 V~~ia~G~~ht~al~~~g~v~~wG~n~~GQ 30 (30)
T PF13540_consen 1 VVQIACGGYHTCALTSDGEVYCWGDNNYGQ 30 (30)
T ss_dssp EEEEEEESSEEEEEE-TTEEEEEE--TTST
T ss_pred CEEEEecCCEEEEEEcCCCEEEEcCCcCCC
Confidence 689999999999999999999999999987
No 13
>KOG0941 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.92 E-value=1.6e-11 Score=117.22 Aligned_cols=191 Identities=27% Similarity=0.368 Sum_probs=145.3
Q ss_pred cCEEccccCCcCeEEEEccCCeEEEEEcCCCEEEEeCCCCCcccCCCCCCCCcceeecCCCCCCCEEEEEeCCCeEEEEE
Q 017198 93 RPRLVEALKGVPCKQVTAGLNFTGFLTIRGHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGPSYMLAVT 172 (375)
Q Consensus 93 ~p~~i~~~~~~~i~~v~~g~~~~~~lt~~g~v~~~G~n~~g~lg~~~~~~~~~p~~~~~~~~~~~i~~i~~g~~~~~~lt 172 (375)
.|+.+..+.-..|.+++||.+|+++++..|++++||.|..||+|.+.......|..++.+.. .+..+|++|.+|++++.
T Consensus 4 ~~~~~~~l~~k~~lq~~cGn~hclal~~~g~~~~wg~~~~g~~~~~~~~~~~~p~~~~sl~g-~p~a~v~~g~~hs~~lS 82 (850)
T KOG0941|consen 4 APRLVLILNYKHILQVGCGNNHCLALSCAGELFVWGMNNNGQLGRALYFPDAKPEPVESLKG-VPLAQVSAGEAHSFALS 82 (850)
T ss_pred hhHHHHHHhhhhhhhhccccHHHHhhhccCCeeeccCCccchhhhhccCCCCCCccchhhcC-CcHHHHhcCCCcchhhh
Confidence 34555556666889999999999999999999999999999999884444444887777755 67889999999999987
Q ss_pred CCCcEEEEeCCCCCccCCCCCCCccCceeeeccccCCccEEEEEcCCCeEEEEeCCCCEEEEeCCCCCCCCCCCCCCccc
Q 017198 173 GNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGDEHVVALDSSGYVYTWGKGYCGALGHGDEIDKTL 252 (375)
Q Consensus 173 ~~g~v~~~G~n~~gqlg~~~~~~~~~p~~i~~~~~~~~~i~~i~~g~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~ 252 (375)
. |+++++++|.++.+|....+|+|+....+...
T Consensus 83 ~-----------------------------------------------~~~~lt~e~~~fs~Ga~~~~q~~h~~~~~~~~ 115 (850)
T KOG0941|consen 83 S-----------------------------------------------HTVLLTDEGKVFSFGAGSTGQLGHSLTENEVL 115 (850)
T ss_pred h-----------------------------------------------chhhcchhccccccCCcccccccccccccccc
Confidence 5 89999999999999999999999987888888
Q ss_pred CeeccCCCCCceEEEEecCCcEEEEEc-CCcEEEEeCCCCC--CCCCCCCCCCCceecceEcCccCCCcEEEEEeCCCce
Q 017198 253 PEPLSSLKSHLAVQVCARKRKTFVLVD-TGSVYGFGWMGFG--SLGFPDRGVSDKVLRPRILDSLRAHHVSQISTGLYHT 329 (375)
Q Consensus 253 p~~i~~~~~~~i~~i~~g~~~~~~l~~-~g~vy~~G~n~~g--qlg~~~~~~~~~~~~p~~~~~~~~~~i~~i~~G~~h~ 329 (375)
|..+.......+..|+||..|+.+... -|++|..|.+..| .+-... .. ..-.....-....+..++.|...+
T Consensus 116 ~~~v~e~i~~~~t~ia~~~~ht~a~v~~l~qsf~~~~~~sGk~~i~s~s---~~--~~l~~~d~~~~~~~~~~~~g~dq~ 190 (850)
T KOG0941|consen 116 PLLVLELIGSRVTRIACVRGHTLAIVPRLGQSFSFGKGASGKGVIVSLS---GE--DLLRDHDSEKDHRCSLAFAGGDQT 190 (850)
T ss_pred cHHHHHHHhhhhHHHHHHHHHHHhhhhhhcceeecccCCCCCceeeccc---hh--hhcccccHHHHHHHHHHhcCCCce
Confidence 888888888889999999999887654 5999999987766 111000 00 000000011122455678888888
Q ss_pred EEEEcCC
Q 017198 330 VVVTDRG 336 (375)
Q Consensus 330 ~~l~~~g 336 (375)
+.+...+
T Consensus 191 ~~l~~~~ 197 (850)
T KOG0941|consen 191 FSLSSKG 197 (850)
T ss_pred EEEEeec
Confidence 8876554
No 14
>KOG0941 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.91 E-value=3e-11 Score=115.40 Aligned_cols=134 Identities=31% Similarity=0.545 Sum_probs=117.5
Q ss_pred cEEEEEcCCCeEEEEeCCCCEEEEeCCCCCCCCCCCCCCcccCeeccCCCCCceEEEEecCCcEEEEEc-------CCcE
Q 017198 211 HVVRVSAGDEHVVALDSSGYVYTWGKGYCGALGHGDEIDKTLPEPLSSLKSHLAVQVCARKRKTFVLVD-------TGSV 283 (375)
Q Consensus 211 ~i~~i~~g~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~p~~i~~~~~~~i~~i~~g~~~~~~l~~-------~g~v 283 (375)
+|.+++||.+|+++++..|++++||.|.+||++.+.......|.+++.+.+.+...|++|..|+++++. +|.+
T Consensus 15 ~~lq~~cGn~hclal~~~g~~~~wg~~~~g~~~~~~~~~~~~p~~~~sl~g~p~a~v~~g~~hs~~lS~~~~~lt~e~~~ 94 (850)
T KOG0941|consen 15 HILQVGCGNNHCLALSCAGELFVWGMNNNGQLGRALYFPDAKPEPVESLKGVPLAQVSAGEAHSFALSSHTVLLTDEGKV 94 (850)
T ss_pred hhhhhccccHHHHhhhccCCeeeccCCccchhhhhccCCCCCCccchhhcCCcHHHHhcCCCcchhhhhchhhcchhccc
Confidence 799999999999999999999999999999999985555555999999999999999999999988776 9999
Q ss_pred EEEeCCCCCCCCCCCCCCCCceecceEcCccCCCcEEEEEeCCCceEEEEcC-CCEEEeeCCCCC
Q 017198 284 YGFGWMGFGSLGFPDRGVSDKVLRPRILDSLRAHHVSQISTGLYHTVVVTDR-GRLFGFGDNERA 347 (375)
Q Consensus 284 y~~G~n~~gqlg~~~~~~~~~~~~p~~~~~~~~~~i~~i~~G~~h~~~l~~~-g~v~~wG~n~~g 347 (375)
+.+|....+|++... ......|..+..+.+..+.+|+||..|++++... |++|..|-+..|
T Consensus 95 fs~Ga~~~~q~~h~~---~~~~~~~~~v~e~i~~~~t~ia~~~~ht~a~v~~l~qsf~~~~~~sG 156 (850)
T KOG0941|consen 95 FSFGAGSTGQLGHSL---TENEVLPLLVLELIGSRVTRIACVRGHTLAIVPRLGQSFSFGKGASG 156 (850)
T ss_pred cccCCcccccccccc---cccccccHHHHHHHhhhhHHHHHHHHHHHhhhhhhcceeecccCCCC
Confidence 999999999999843 4455667777777788999999999999887754 899999998877
No 15
>KOG3669 consensus Uncharacterized conserved protein, contains dysferlin, TECPR and PH domains [General function prediction only]
Probab=96.23 E-value=0.52 Score=44.83 Aligned_cols=107 Identities=27% Similarity=0.319 Sum_probs=70.3
Q ss_pred ccCCeEEEEEcCCCEEEEeCCCCCcccCCCCCCC-CcceeecCCCCCCCEEEEEeCC-CeEEEEECCCcEEEE-eCCCCC
Q 017198 110 AGLNFTGFLTIRGHVHTCGSNTHGQLGHGDTLDR-PTPKSIAPLEEVGSVVQIAAGP-SYMLAVTGNGVVYSF-GSGSNF 186 (375)
Q Consensus 110 ~g~~~~~~lt~~g~v~~~G~n~~g~lg~~~~~~~-~~p~~~~~~~~~~~i~~i~~g~-~~~~~lt~~g~v~~~-G~n~~g 186 (375)
.|.....++..+|.+|. +.|.....+. ...+.+... ..+++|++|. ....+++++|.|+.- |-....
T Consensus 190 ~g~~~awAI~s~Gd~y~-------RtGvs~~~P~GraW~~i~~~---t~L~qISagPtg~VwAvt~nG~vf~R~GVsRqN 259 (705)
T KOG3669|consen 190 LGDDTAWAIRSSGDLYL-------RTGVSVDRPCGRAWKVICPY---TDLSQISAGPTGVVWAVTENGAVFYREGVSRQN 259 (705)
T ss_pred CCceEEEEEecCCcEEE-------eccccCCCCCCceeeecCCC---CccceEeecCcceEEEEeeCCcEEEEecccccC
Confidence 45556677888888885 2333222221 223333333 4799999998 888999999988754 666655
Q ss_pred ccCCCCCCCccCceeeeccccCCccEEEEEcCCCeEEEEeCCCCEEEE
Q 017198 187 CLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGDEHVVALDSSGYVYTW 234 (375)
Q Consensus 187 qlg~~~~~~~~~p~~i~~~~~~~~~i~~i~~g~~~~~~lt~~g~v~~~ 234 (375)
+.|..=. ....|+... .++.|+-|....-+||++|++|.-
T Consensus 260 p~GdsWk-dI~tP~~a~-------~~v~iSvGt~t~Waldndg~lwfr 299 (705)
T KOG3669|consen 260 PEGDSWK-DIVTPRQAL-------EPVCISVGTQTLWALDNDGNLWFR 299 (705)
T ss_pred CCCchhh-hccCccccc-------ceEEEEeccceEEEEecCCcEEEE
Confidence 5554222 333333322 488999999999999999999974
No 16
>PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others. It is an essential pathogenicity factor of approximately 198 kDa. Its injection into the host-plant is dependent upon the bacterial type III or Hrp secretion system []. The family is long and carries a number of predicted functional regions, including an ERMS or endoplasmic reticulum membrane retention signal at both the C- and the N-termini, a leucine-zipper motif from residues 539-560, and a nuclear localisation signal at 1358-1361. This conserved AvrE-family of effectors is among the few that are required for full virulence of many phytopathogenic pseudomonads, erwinias and pantoeas [].
Probab=96.08 E-value=0.27 Score=52.52 Aligned_cols=244 Identities=17% Similarity=0.212 Sum_probs=123.6
Q ss_pred CEEEEecCCceEEEEEcCCcEEEeeCCCCCcccCCCCCCceecCEEccc---cC-----Cc--------------CeEEE
Q 017198 51 HVVQVSASENHAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEA---LK-----GV--------------PCKQV 108 (375)
Q Consensus 51 ~i~~i~~g~~~~~~lt~~g~vy~~G~n~~gqlg~~~~~~~~~~p~~i~~---~~-----~~--------------~i~~v 108 (375)
..+.|....+..++.+.+|+||.--..... .......+.+... +. .. -.++=
T Consensus 490 ~A~~VgLs~drLFvADseGkLYsa~l~~~~------~~~~~l~~~p~~~~~~~~~~~G~~~~VtGF~~gd~G~lhAlikd 563 (1774)
T PF11725_consen 490 QAQSVGLSNDRLFVADSEGKLYSADLPAAQ------DNEPKLKLMPEPAYQLLGSALGGDHKVTGFISGDDGQLHALIKD 563 (1774)
T ss_pred hhhheeecCCeEEEEeCCCCEEeccccccc------CCCcceEeccccccccccccccccceeeccccCCCCeeeEEEec
Confidence 667788888889999999999986544421 1111111111111 10 00 13334
Q ss_pred EccCCeEEEEEcCCCEEEEeCCCCCcccCCCCCCCCcceeecCCCCCCCEEEEEeCCCeEEEEECCCcEEEEeCCCCCcc
Q 017198 109 TAGLNFTGFLTIRGHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGPSYMLAVTGNGVVYSFGSGSNFCL 188 (375)
Q Consensus 109 ~~g~~~~~~lt~~g~v~~~G~n~~g~lg~~~~~~~~~p~~~~~~~~~~~i~~i~~g~~~~~~lt~~g~v~~~G~n~~gql 188 (375)
..|..|++.|.+++.=|--|||-...|-.....-...|. .+ ..-.-+..|..-.++|. +|+|..|-....+--
T Consensus 564 ~~GQ~Hs~aLde~~~~~~pGWNLSd~Lvl~N~~GL~~~~-~p-----~~~~~ldl~r~G~v~L~-~G~i~~wD~ttq~W~ 636 (1774)
T PF11725_consen 564 RQGQRHSHALDEQGSQLQPGWNLSDALVLDNTRGLPKPP-AP-----APHEILDLGRAGLVGLQ-DGKIQYWDSTTQCWK 636 (1774)
T ss_pred cCCceeeccccccCCccCCCCcccceeEeeccCCCCCCC-CC-----ChHHhhccccccceeec-cceEeeecCcchhhh
Confidence 557777777877777777777655444322221111110 00 11111234667778888 599999965332211
Q ss_pred CCCCCCCccCceeeeccccCCccEEEEEcCCCeEEEEeCCCCEEEEeCC-CCCCCCCCCCC------Ccc---cCeeccC
Q 017198 189 GHGEQHDELQPRAIQTFRRKGIHVVRVSAGDEHVVALDSSGYVYTWGKG-YCGALGHGDEI------DKT---LPEPLSS 258 (375)
Q Consensus 189 g~~~~~~~~~p~~i~~~~~~~~~i~~i~~g~~~~~~lt~~g~v~~~G~n-~~gqlg~~~~~------~~~---~p~~i~~ 258 (375)
-..++ .|.++.-|.+.-..+..+|+|-.--.+ .+.-+-++... ... .-..|..
T Consensus 637 ----------~~~~k-------d~~~L~RG~D~~AYVLk~G~vk~l~i~~~~~~~~~g~~~~~a~~~~r~~~e~G~~l~G 699 (1774)
T PF11725_consen 637 ----------DAGVK-------DIDQLKRGLDGNAYVLKDGKVKRLSINQEHPSIAHGDNNVFALPQRRNKVELGDALEG 699 (1774)
T ss_pred ----------hccCc-------CHHHHhccccCCceEecCCceeeeecccCCCccccCCCcccccccccCCCCCCccccC
Confidence 11110 111222222222222233333322111 00111111110 111 1123555
Q ss_pred CCCCceEEEE-ecCCcEEEEEcCCcEEEEeCCCCCCCCCCCCCCCCceecceEcC--ccCCCcEEEEEeCCCc-eEEEEc
Q 017198 259 LKSHLAVQVC-ARKRKTFVLVDTGSVYGFGWMGFGSLGFPDRGVSDKVLRPRILD--SLRAHHVSQISTGLYH-TVVVTD 334 (375)
Q Consensus 259 ~~~~~i~~i~-~g~~~~~~l~~~g~vy~~G~n~~gqlg~~~~~~~~~~~~p~~~~--~~~~~~i~~i~~G~~h-~~~l~~ 334 (375)
+.+..|..++ .+.++.++|++.|+|-..= ....|+.++ .+ ...|.++++-..| -++++.
T Consensus 700 l~~~~i~a~Avv~~~~fvald~qg~lt~h~----------------k~g~p~~l~~~gl-~G~ik~l~lD~~~nL~Alt~ 762 (1774)
T PF11725_consen 700 LEDRVITAFAVVNDNKFVALDDQGDLTAHQ----------------KPGRPVPLSRPGL-SGEIKDLALDEKQNLYALTS 762 (1774)
T ss_pred CCcCcceeEEEEcCCceEEeccCCcccccc----------------CCCCCccCCCCCC-CcchhheeeccccceeEecC
Confidence 6666677765 5678899999999986421 112244444 33 3489999998664 568999
Q ss_pred CCCEEEe
Q 017198 335 RGRLFGF 341 (375)
Q Consensus 335 ~g~v~~w 341 (375)
+|++|.-
T Consensus 763 ~G~Lf~~ 769 (1774)
T PF11725_consen 763 TGELFRL 769 (1774)
T ss_pred CCceeec
Confidence 9999975
No 17
>KOG3669 consensus Uncharacterized conserved protein, contains dysferlin, TECPR and PH domains [General function prediction only]
Probab=94.77 E-value=3.3 Score=39.67 Aligned_cols=107 Identities=18% Similarity=0.172 Sum_probs=66.9
Q ss_pred eCCCeEEEEECCCcEEEEeCCCCCccCCCCCCCccCceeeeccccCCccEEEEEcCC-CeEEEEeCCCCEEE-EeCCCCC
Q 017198 163 AGPSYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGD-EHVVALDSSGYVYT-WGKGYCG 240 (375)
Q Consensus 163 ~g~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~p~~i~~~~~~~~~i~~i~~g~-~~~~~lt~~g~v~~-~G~n~~g 240 (375)
.|.....+|..+|.+|.- .|.....+.-..-++... ..+...|++|. ....+++.+|.||. .|-....
T Consensus 190 ~g~~~awAI~s~Gd~y~R-------tGvs~~~P~GraW~~i~~---~t~L~qISagPtg~VwAvt~nG~vf~R~GVsRqN 259 (705)
T KOG3669|consen 190 LGDDTAWAIRSSGDLYLR-------TGVSVDRPCGRAWKVICP---YTDLSQISAGPTGVVWAVTENGAVFYREGVSRQN 259 (705)
T ss_pred CCceEEEEEecCCcEEEe-------ccccCCCCCCceeeecCC---CCccceEeecCcceEEEEeeCCcEEEEecccccC
Confidence 455666788888888863 333322222221121111 11588999998 66779999999775 4766655
Q ss_pred CCCCCCCCCcccCeeccCCCCCceEEEEecCCcEEEEEcCCcEEE
Q 017198 241 ALGHGDEIDKTLPEPLSSLKSHLAVQVCARKRKTFVLVDTGSVYG 285 (375)
Q Consensus 241 qlg~~~~~~~~~p~~i~~~~~~~i~~i~~g~~~~~~l~~~g~vy~ 285 (375)
+.|..=. ...+|.... .++.|+.|....-+|+.+|++|.
T Consensus 260 p~GdsWk-dI~tP~~a~-----~~v~iSvGt~t~Waldndg~lwf 298 (705)
T KOG3669|consen 260 PEGDSWK-DIVTPRQAL-----EPVCISVGTQTLWALDNDGNLWF 298 (705)
T ss_pred CCCchhh-hccCccccc-----ceEEEEeccceEEEEecCCcEEE
Confidence 5553222 222222221 28999999999999999999985
No 18
>KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=91.64 E-value=0.013 Score=59.66 Aligned_cols=131 Identities=15% Similarity=0.049 Sum_probs=85.6
Q ss_pred CcCeEEEEccCCeEEEEEcCCCEEEEeCCCCCcccC--CCCCCCCcceeecCCCCCCCEEEEEeCCCeEEEEECCCcEEE
Q 017198 102 GVPCKQVTAGLNFTGFLTIRGHVHTCGSNTHGQLGH--GDTLDRPTPKSIAPLEEVGSVVQIAAGPSYMLAVTGNGVVYS 179 (375)
Q Consensus 102 ~~~i~~v~~g~~~~~~lt~~g~v~~~G~n~~g~lg~--~~~~~~~~p~~~~~~~~~~~i~~i~~g~~~~~~lt~~g~v~~ 179 (375)
..+++.|.+-.+..++|..+|++|.|-+....-+-. ....+...|..-..-.-.++|+.+++.+-...++|++|+|-+
T Consensus 373 an~~I~I~A~s~el~AlhrkGelYqWaWdESEglddplai~kn~dHPd~a~iG~hge~ii~lSanniR~si~T~nghlas 452 (3015)
T KOG0943|consen 373 ANKFICIGALSSELLALHRKGELYQWAWDESEGLDDPLAINKNLDHPDAAFIGLHGEKIILLSANNIRASIATENGHLAS 452 (3015)
T ss_pred CCeeEEeehhHHHHHHHhhCCceeeeecccccCCCChhhcccCCCCCccceecccCCeeEEeecCceeeeeeecCCchhh
Confidence 457888888888899999999999999876654432 112222223221111223789999999999999999999999
Q ss_pred EeCCCCCccCCCCCCCccCceeeeccccCCccEEEEEcCCCeEEEEeCCCCEEEEeCC
Q 017198 180 FGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGDEHVVALDSSGYVYTWGKG 237 (375)
Q Consensus 180 ~G~n~~gqlg~~~~~~~~~p~~i~~~~~~~~~i~~i~~g~~~~~~lt~~g~v~~~G~n 237 (375)
|=.- +|.+.... ...+........++.+++..|...|.++...+.-+|-||.-
T Consensus 453 WlDE----cgagV~fk-La~ea~Tkieed~~maVqd~~~adhlaAf~~dniihWcGiV 505 (3015)
T KOG0943|consen 453 WLDE----CGAGVAFK-LAHEAQTKIEEDGEMAVQDHCCADHLAAFLEDNIIHWCGIV 505 (3015)
T ss_pred HHhh----hhhhhhhh-hhhhhhhhhhhhhHHHHHHHHHHHHHHHHhhhceeeEEeee
Confidence 9431 11111111 11112222333455677777888888888888889999963
No 19
>PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others. It is an essential pathogenicity factor of approximately 198 kDa. Its injection into the host-plant is dependent upon the bacterial type III or Hrp secretion system []. The family is long and carries a number of predicted functional regions, including an ERMS or endoplasmic reticulum membrane retention signal at both the C- and the N-termini, a leucine-zipper motif from residues 539-560, and a nuclear localisation signal at 1358-1361. This conserved AvrE-family of effectors is among the few that are required for full virulence of many phytopathogenic pseudomonads, erwinias and pantoeas [].
Probab=91.46 E-value=2 Score=46.32 Aligned_cols=111 Identities=8% Similarity=0.056 Sum_probs=71.3
Q ss_pred CCEEEEE-eCCCeEEEEECCCcEEEEeCCCCCccCCCCCCCccCceeeeccccCCccEEEEEcCCC-eEEEEeCCCCEEE
Q 017198 156 GSVVQIA-AGPSYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGDE-HVVALDSSGYVYT 233 (375)
Q Consensus 156 ~~i~~i~-~g~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~p~~i~~~~~~~~~i~~i~~g~~-~~~~lt~~g~v~~ 233 (375)
..|+.++ .+.++.++|+++|++-..- ..-.|+.+...... ..|..|++-.. +-+|++.+|++|.
T Consensus 703 ~~i~a~Avv~~~~fvald~qg~lt~h~-------------k~g~p~~l~~~gl~-G~ik~l~lD~~~nL~Alt~~G~Lf~ 768 (1774)
T PF11725_consen 703 RVITAFAVVNDNKFVALDDQGDLTAHQ-------------KPGRPVPLSRPGLS-GEIKDLALDEKQNLYALTSTGELFR 768 (1774)
T ss_pred CcceeEEEEcCCceEEeccCCcccccc-------------CCCCCccCCCCCCC-cchhheeeccccceeEecCCCceee
Confidence 5677766 4568889999999886642 11125555433222 26899999776 4568999999997
Q ss_pred EeCCCCCCCCCCCCCCcccCeeccCCCCCceEEEEecCCcEEEEEcCC
Q 017198 234 WGKGYCGALGHGDEIDKTLPEPLSSLKSHLAVQVCARKRKTFVLVDTG 281 (375)
Q Consensus 234 ~G~n~~gqlg~~~~~~~~~p~~i~~~~~~~i~~i~~g~~~~~~l~~~g 281 (375)
.-....-..-. .......++++..+.+.++..+....+|.+.+.-++
T Consensus 769 ~~k~~WQ~~~~-~~~~~~~W~~v~lP~~~~v~~l~~~~~~~l~~~~~d 815 (1774)
T PF11725_consen 769 LPKEAWQGNAE-GDQMAAKWQKVALPDEQPVKSLRTNDDNHLSAQIED 815 (1774)
T ss_pred cCHHHhhCccc-CCccccCceeccCCCCCchhhhhcCCCCceEEEecC
Confidence 53211110000 111235667777778888999999999988876554
No 20
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=91.24 E-value=13 Score=34.77 Aligned_cols=154 Identities=12% Similarity=0.124 Sum_probs=82.7
Q ss_pred eEEEEccC--CeEEEEEcCCCEEEEeCCCCCcccCCCCCCCCcceeecCCCCCCCEEEEEeCCCeEEEE--ECCCcEEEE
Q 017198 105 CKQVTAGL--NFTGFLTIRGHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGPSYMLAV--TGNGVVYSF 180 (375)
Q Consensus 105 i~~v~~g~--~~~~~lt~~g~v~~~G~n~~g~lg~~~~~~~~~p~~~~~~~~~~~i~~i~~g~~~~~~l--t~~g~v~~~ 180 (375)
+..+++.. ++.++=|..|++|.|-.+.---|.. ....- ..|+.+....+-.+++ .+||.|++|
T Consensus 84 v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v----------~~aHY---Q~ITcL~fs~dgs~iiTgskDg~V~vW 150 (476)
T KOG0646|consen 84 VHALASSNLGYFLLAGTISGNLYLWELSSGILLNV----------LSAHY---QSITCLKFSDDGSHIITGSKDGAVLVW 150 (476)
T ss_pred eeeeecCCCceEEEeecccCcEEEEEeccccHHHH----------HHhhc---cceeEEEEeCCCcEEEecCCCccEEEE
Confidence 44554433 3344446889999995543211110 00111 3466666666555555 478899999
Q ss_pred eCCCCCccCCCCCCCccCceeeeccccCCccEEEEEcCCC--eEEEE--eCCCCEEEEeCCCCCCCCCCCCCCcccCeec
Q 017198 181 GSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGDE--HVVAL--DSSGYVYTWGKGYCGALGHGDEIDKTLPEPL 256 (375)
Q Consensus 181 G~n~~gqlg~~~~~~~~~p~~i~~~~~~~~~i~~i~~g~~--~~~~l--t~~g~v~~~G~n~~gqlg~~~~~~~~~p~~i 256 (375)
-.-.- -...+...|..+-.+......|+++.++.. .+.++ .+|..+-.|-... + ..-..+
T Consensus 151 ~l~~l-----v~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~------g-----~LLlti 214 (476)
T KOG0646|consen 151 LLTDL-----VSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSL------G-----VLLLTI 214 (476)
T ss_pred EEEee-----cccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEecc------c-----eeeEEE
Confidence 64221 111222255556667777788999988765 33333 3556666664311 1 011111
Q ss_pred cCCCCCceEEEEecCCcEEEEEcCCcEEEEe
Q 017198 257 SSLKSHLAVQVCARKRKTFVLVDTGSVYGFG 287 (375)
Q Consensus 257 ~~~~~~~i~~i~~g~~~~~~l~~~g~vy~~G 287 (375)
..+......-+.-+..+.++=+++|++|..-
T Consensus 215 ~fp~si~av~lDpae~~~yiGt~~G~I~~~~ 245 (476)
T KOG0646|consen 215 TFPSSIKAVALDPAERVVYIGTEEGKIFQNL 245 (476)
T ss_pred ecCCcceeEEEcccccEEEecCCcceEEeee
Confidence 1122222344566777778888899988643
No 21
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=90.79 E-value=13 Score=39.50 Aligned_cols=203 Identities=18% Similarity=0.180 Sum_probs=99.6
Q ss_pred eCCcEEEEeCCCCCccCCCCCCCeeeeeeeecCCCCCCEEEEecCCceEEEEEcCCcEEEeeCCCC-CcccCCCCCCcee
Q 017198 14 SNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSASENHAAFVLQSGQVFTCGDNSS-FCCGHRDTNRPIF 92 (375)
Q Consensus 14 ~~g~l~~wG~n~~g~Lg~~~~~~~~~~~~~~~~~~~~~i~~i~~g~~~~~~lt~~g~vy~~G~n~~-gqlg~~~~~~~~~ 92 (375)
.|++||.|=.++.+++-.-+..++..-...+--|.+.-++ ---.|.+++..--+++..|-... .+.+...-.
T Consensus 97 iDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv---~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~---- 169 (1311)
T KOG1900|consen 97 IDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFV---PEIQHLLVVATPVEIVILGVSFDEFTGELSIFN---- 169 (1311)
T ss_pred eCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcch---hhhheeEEecccceEEEEEEEeccccCcccccc----
Confidence 8999999999998887665555532211111111111111 01368888888888988884431 111111110
Q ss_pred cCEEccccCCcCeEEEEccCCeEEEEEcCCCEEEEeCCCC----------CcccCCCC--------CCCCcceeecCC-C
Q 017198 93 RPRLVEALKGVPCKQVTAGLNFTGFLTIRGHVHTCGSNTH----------GQLGHGDT--------LDRPTPKSIAPL-E 153 (375)
Q Consensus 93 ~p~~i~~~~~~~i~~v~~g~~~~~~lt~~g~v~~~G~n~~----------g~lg~~~~--------~~~~~p~~~~~~-~ 153 (375)
....-..++..|..|.+ +++|+||.-|.+.. |..+.-.. .....|..+..+ .
T Consensus 170 -~~~~i~~dg~~V~~I~~--------t~nGRIF~~G~dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~ 240 (1311)
T KOG1900|consen 170 -TSFKISVDGVSVNCITY--------TENGRIFFAGRDGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGS 240 (1311)
T ss_pred -cceeeecCCceEEEEEe--------ccCCcEEEeecCCCEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCC
Confidence 00111122334444443 45555555554321 11111000 111245533333 3
Q ss_pred CCCCEEEEEeCCCeEEEE--ECCCcEEEEeCCCCCccCCCCC-----------CCccCceeeeccccCCccEEEEEc---
Q 017198 154 EVGSVVQIAAGPSYMLAV--TGNGVVYSFGSGSNFCLGHGEQ-----------HDELQPRAIQTFRRKGIHVVRVSA--- 217 (375)
Q Consensus 154 ~~~~i~~i~~g~~~~~~l--t~~g~v~~~G~n~~gqlg~~~~-----------~~~~~p~~i~~~~~~~~~i~~i~~--- 217 (375)
..+.|++|+..+...+.. ++.|.|-+|-....|.-+.-.- .....|.. .....+|++|..
T Consensus 241 ~~dpI~qi~ID~SR~IlY~lsek~~v~~Y~i~~~G~~~~r~~~~~~~~i~~qa~~~~~~~~----~s~f~~IvsI~~l~~ 316 (1311)
T KOG1900|consen 241 SKDPIRQITIDNSRNILYVLSEKGTVSAYDIGGNGLGGPRFVSVSRNYIDVQALSLKNPLD----DSVFFSIVSISPLSA 316 (1311)
T ss_pred CCCcceeeEeccccceeeeeccCceEEEEEccCCCccceeeeehhHHHHHHHhhhccccCC----CcccceeEEecccCc
Confidence 336899999998777654 6678666664433333222100 00011111 111124555544
Q ss_pred ---CCCeEEEEeCCC-CEEEEeC
Q 017198 218 ---GDEHVVALDSSG-YVYTWGK 236 (375)
Q Consensus 218 ---g~~~~~~lt~~g-~v~~~G~ 236 (375)
..-|.+|+|..| ++|.-|.
T Consensus 317 ~es~~l~LvA~ts~GvRlYfs~s 339 (1311)
T KOG1900|consen 317 SESNDLHLVAITSTGVRLYFSTS 339 (1311)
T ss_pred ccccceeEEEEecCCeEEEEecc
Confidence 456889999998 6776654
No 22
>KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=90.61 E-value=0.015 Score=59.11 Aligned_cols=132 Identities=14% Similarity=0.074 Sum_probs=83.8
Q ss_pred CEEEEecCCceEEEEEcCCcEEEeeCCCCCcccCCC-CCCceecCE-EccccCCcCeEEEEccCCeEEEEEcCCCEEEEe
Q 017198 51 HVVQVSASENHAAFVLQSGQVFTCGDNSSFCCGHRD-TNRPIFRPR-LVEALKGVPCKQVTAGLNFTGFLTIRGHVHTCG 128 (375)
Q Consensus 51 ~i~~i~~g~~~~~~lt~~g~vy~~G~n~~gqlg~~~-~~~~~~~p~-~i~~~~~~~i~~v~~g~~~~~~lt~~g~v~~~G 128 (375)
++..|.+-....++|.++|++|.|-+...--+-..- .......|. ....+.+.+|+.+++..-..-++|++|+|.+|=
T Consensus 375 ~~I~I~A~s~el~AlhrkGelYqWaWdESEglddplai~kn~dHPd~a~iG~hge~ii~lSanniR~si~T~nghlasWl 454 (3015)
T KOG0943|consen 375 KFICIGALSSELLALHRKGELYQWAWDESEGLDDPLAINKNLDHPDAAFIGLHGEKIILLSANNIRASIATENGHLASWL 454 (3015)
T ss_pred eeEEeehhHHHHHHHhhCCceeeeecccccCCCChhhcccCCCCCccceecccCCeeEEeecCceeeeeeecCCchhhHH
Confidence 677777777788999999999999877643222110 011122332 223456779999999999999999999999994
Q ss_pred CCCCCcccCCCCCCCCcceeecCCCCCCCEEEEEeCCCeEEEEECCCcEEEEeCCCCC
Q 017198 129 SNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGPSYMLAVTGNGVVYSFGSGSNF 186 (375)
Q Consensus 129 ~n~~g~lg~~~~~~~~~p~~~~~~~~~~~i~~i~~g~~~~~~lt~~g~v~~~G~n~~g 186 (375)
.. +|.+..........-..-.+...+++..|...|..+..++..+|-||.--+.
T Consensus 455 DE----cgagV~fkLa~ea~Tkieed~~maVqd~~~adhlaAf~~dniihWcGiVPf~ 508 (3015)
T KOG0943|consen 455 DE----CGAGVAFKLAHEAQTKIEEDGEMAVQDHCCADHLAAFLEDNIIHWCGIVPFS 508 (3015)
T ss_pred hh----hhhhhhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHhhhceeeEEeeeeeh
Confidence 32 2222211111111111111225677777888888899999999999975443
No 23
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=89.04 E-value=35 Score=36.48 Aligned_cols=218 Identities=14% Similarity=0.050 Sum_probs=100.5
Q ss_pred EEEEEcCCcEEEeeCCCCCcccCCCCCCceecCE-EccccCCcCeEEEEccCCeEEEEEcCCCEEEEeCCCCCcc-cCCC
Q 017198 62 AAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPR-LVEALKGVPCKQVTAGLNFTGFLTIRGHVHTCGSNTHGQL-GHGD 139 (375)
Q Consensus 62 ~~~lt~~g~vy~~G~n~~gqlg~~~~~~~~~~p~-~i~~~~~~~i~~v~~g~~~~~~lt~~g~v~~~G~n~~g~l-g~~~ 139 (375)
-+.+|-|++||.|-.+..+++-.-+......... .+....+.-+. --.|.++|.+-=+|+..|-...... +...
T Consensus 92 RaWiTiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~----~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~ 167 (1311)
T KOG1900|consen 92 RAWITIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVP----EIQHLLVVATPVEIVILGVSFDEFTGELSI 167 (1311)
T ss_pred ceEEEeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchh----hhheeEEecccceEEEEEEEeccccCcccc
Confidence 4789999999999988855544322211111111 11111121111 2368889988899998886432221 1111
Q ss_pred CCCCCcceeecCCCCCCCEEEEEeCCCeEEEEE-CCCcEEEEeC----CCCCc-cCC----CCCCCccCceeeeccccCC
Q 017198 140 TLDRPTPKSIAPLEEVGSVVQIAAGPSYMLAVT-GNGVVYSFGS----GSNFC-LGH----GEQHDELQPRAIQTFRRKG 209 (375)
Q Consensus 140 ~~~~~~p~~~~~~~~~~~i~~i~~g~~~~~~lt-~~g~v~~~G~----n~~gq-lg~----~~~~~~~~p~~i~~~~~~~ 209 (375)
... -..+.. +...|..|.+..+--++++ ++|.||-.=. +-+++ +-. ........|..+..+....
T Consensus 168 f~~---~~~i~~--dg~~V~~I~~t~nGRIF~~G~dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~ 242 (1311)
T KOG1900|consen 168 FNT---SFKISV--DGVSVNCITYTENGRIFFAGRDGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSK 242 (1311)
T ss_pred ccc---ceeeec--CCceEEEEEeccCCcEEEeecCCCEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCC
Confidence 111 111111 1134444443333333332 4444442211 11111 000 0011123455333332345
Q ss_pred ccEEEEEcCCCeEE--EEeCCCCEEEEeCCCCCCCCCCCCCC---------cccCeeccCCCCCceEEE------EecCC
Q 017198 210 IHVVRVSAGDEHVV--ALDSSGYVYTWGKGYCGALGHGDEID---------KTLPEPLSSLKSHLAVQV------CARKR 272 (375)
Q Consensus 210 ~~i~~i~~g~~~~~--~lt~~g~v~~~G~n~~gqlg~~~~~~---------~~~p~~i~~~~~~~i~~i------~~g~~ 272 (375)
.+|.+|+-.....+ .+++.|.|-+|-....|+-+.-.-.. ...-.++....-.+|++| ..-+-
T Consensus 243 dpI~qi~ID~SR~IlY~lsek~~v~~Y~i~~~G~~~~r~~~~~~~~i~~qa~~~~~~~~~s~f~~IvsI~~l~~~es~~l 322 (1311)
T KOG1900|consen 243 DPIRQITIDNSRNILYVLSEKGTVSAYDIGGNGLGGPRFVSVSRNYIDVQALSLKNPLDDSVFFSIVSISPLSASESNDL 322 (1311)
T ss_pred CcceeeEeccccceeeeeccCceEEEEEccCCCccceeeeehhHHHHHHHhhhccccCCCcccceeEEecccCcccccce
Confidence 58999998876654 56788888777554444433211000 001112222222234444 34466
Q ss_pred cEEEEEcCC-cEEEEeC
Q 017198 273 KTFVLVDTG-SVYGFGW 288 (375)
Q Consensus 273 ~~~~l~~~g-~vy~~G~ 288 (375)
|-++++..| ++|.-|+
T Consensus 323 ~LvA~ts~GvRlYfs~s 339 (1311)
T KOG1900|consen 323 HLVAITSTGVRLYFSTS 339 (1311)
T ss_pred eEEEEecCCeEEEEecc
Confidence 788888887 5776554
No 24
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=88.10 E-value=3.3 Score=35.29 Aligned_cols=34 Identities=15% Similarity=0.112 Sum_probs=28.0
Q ss_pred eecCCCCCCEEEEecCCceEEEEEcCCcEEEeeCCC
Q 017198 43 RINFPSAAHVVQVSASENHAAFVLQSGQVFTCGDNS 78 (375)
Q Consensus 43 ~~~~~~~~~i~~i~~g~~~~~~lt~~g~vy~~G~n~ 78 (375)
++.+.. +++.+.|.+.+.+++|++|.+|+|--..
T Consensus 8 ~i~Lgs--~~~~l~~~~~~Ll~iT~~G~l~vWnl~~ 41 (219)
T PF07569_consen 8 PIVLGS--PVSFLECNGSYLLAITSSGLLYVWNLKK 41 (219)
T ss_pred cEecCC--ceEEEEeCCCEEEEEeCCCeEEEEECCC
Confidence 344444 8888999999999999999999997555
No 25
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=87.81 E-value=17 Score=31.32 Aligned_cols=67 Identities=13% Similarity=0.136 Sum_probs=40.0
Q ss_pred CeEEEEc--cCCeEEEEEcCCCEEEEeCCCCCcccCCCCCCCCcceeecCCCCCCCEEEEEeCCC--eEEEEECCCcEEE
Q 017198 104 PCKQVTA--GLNFTGFLTIRGHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGPS--YMLAVTGNGVVYS 179 (375)
Q Consensus 104 ~i~~v~~--g~~~~~~lt~~g~v~~~G~n~~g~lg~~~~~~~~~p~~~~~~~~~~~i~~i~~g~~--~~~~lt~~g~v~~ 179 (375)
+|..|.. ...+.+.-+.+|.|++|-... ..-.....|. . ...|.+++...+ ...+.++.|..|+
T Consensus 126 pVn~vvlhpnQteLis~dqsg~irvWDl~~------~~c~~~liPe----~--~~~i~sl~v~~dgsml~a~nnkG~cyv 193 (311)
T KOG0315|consen 126 PVNTVVLHPNQTELISGDQSGNIRVWDLGE------NSCTHELIPE----D--DTSIQSLTVMPDGSMLAAANNKGNCYV 193 (311)
T ss_pred CcceEEecCCcceEEeecCCCcEEEEEccC------CccccccCCC----C--CcceeeEEEcCCCcEEEEecCCccEEE
Confidence 3444443 444556667889999995322 1111122222 2 156777777764 4567789999999
Q ss_pred EeC
Q 017198 180 FGS 182 (375)
Q Consensus 180 ~G~ 182 (375)
|-.
T Consensus 194 W~l 196 (311)
T KOG0315|consen 194 WRL 196 (311)
T ss_pred EEc
Confidence 965
No 26
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=87.46 E-value=16 Score=33.76 Aligned_cols=70 Identities=9% Similarity=0.106 Sum_probs=41.6
Q ss_pred CCEEEEEeCCCeE--EEEECCCcEEEEeCCCCCccCCCCCCCccCceeeeccccCCccEEEEEcCCCeEEEE--eCCCCE
Q 017198 156 GSVVQIAAGPSYM--LAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGDEHVVAL--DSSGYV 231 (375)
Q Consensus 156 ~~i~~i~~g~~~~--~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~p~~i~~~~~~~~~i~~i~~g~~~~~~l--t~~g~v 231 (375)
.+|.+++...+-- ++-..+.++..|-.-+ ...+++...-+...--|.+..+|.+..++. ++|++|
T Consensus 396 ~~its~~iS~d~k~~LvnL~~qei~LWDl~e-----------~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kv 464 (519)
T KOG0293|consen 396 QPITSFSISKDGKLALVNLQDQEIHLWDLEE-----------NKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKV 464 (519)
T ss_pred CceeEEEEcCCCcEEEEEcccCeeEEeecch-----------hhHHHHhhcccccceEEEeccCCCCcceEEecCCCceE
Confidence 5677776665433 3334677888886421 122222222222223577788888866666 589999
Q ss_pred EEEeC
Q 017198 232 YTWGK 236 (375)
Q Consensus 232 ~~~G~ 236 (375)
|-|-.
T Consensus 465 yIWhr 469 (519)
T KOG0293|consen 465 YIWHR 469 (519)
T ss_pred EEEEc
Confidence 99964
No 27
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=86.91 E-value=28 Score=32.89 Aligned_cols=203 Identities=11% Similarity=0.020 Sum_probs=95.3
Q ss_pred ecCCCCCCEEEEec-CCceEEEEEcCCcEEEeeCCCCCcccCCCCCCceecCEEc--cccCCcCeEEEEccCCeEEEEEc
Q 017198 44 INFPSAAHVVQVSA-SENHAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLV--EALKGVPCKQVTAGLNFTGFLTI 120 (375)
Q Consensus 44 ~~~~~~~~i~~i~~-g~~~~~~lt~~g~vy~~G~n~~gqlg~~~~~~~~~~p~~i--~~~~~~~i~~v~~g~~~~~~lt~ 120 (375)
+.+.. .+|+.+.- -....++|++||.+++.. -.|.. . ...+..+ ......++-.+..+..-.++||.
T Consensus 76 i~w~~-~~iv~~~wt~~e~LvvV~~dG~v~vy~--~~G~~-~------fsl~~~i~~~~v~e~~i~~~~~~~~GivvLt~ 145 (410)
T PF04841_consen 76 IPWDS-GRIVGMGWTDDEELVVVQSDGTVRVYD--LFGEF-Q------FSLGEEIEEEKVLECRIFAIWFYKNGIVVLTG 145 (410)
T ss_pred EEECC-CCEEEEEECCCCeEEEEEcCCEEEEEe--CCCce-e------echhhhccccCcccccccccccCCCCEEEECC
Confidence 44444 47777765 456789999999988763 22222 0 1111111 11112233344555566888999
Q ss_pred CCCEEEEeCCCCCcccCCCCCCCCcceeec---CCCCCCCEEEEEeCCCeEEEEECCCcEEEEeCCCCCccCCCCCCCcc
Q 017198 121 RGHVHTCGSNTHGQLGHGDTLDRPTPKSIA---PLEEVGSVVQIAAGPSYMLAVTGNGVVYSFGSGSNFCLGHGEQHDEL 197 (375)
Q Consensus 121 ~g~v~~~G~n~~g~lg~~~~~~~~~p~~~~---~~~~~~~i~~i~~g~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~ 197 (375)
++++|..=.... ..-.. .....|.... .......+..+......-+.+..++.++..-.+...+
T Consensus 146 ~~~~~~v~n~~~-~~~~~--~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~~---------- 212 (410)
T PF04841_consen 146 NNRFYVVNNIDE-PVKLR--RLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSFKQ---------- 212 (410)
T ss_pred CCeEEEEeCccc-cchhh--ccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEcccccc----------
Confidence 999998733221 10000 0001121111 1111122322333333334444455666443322111
Q ss_pred CceeeeccccCCccEEEEEcC--CCeEEEEeCCCCEEEEeCCCCCCCCCCCCCCcccCeeccCCCCCceEEEEecCCcEE
Q 017198 198 QPRAIQTFRRKGIHVVRVSAG--DEHVVALDSSGYVYTWGKGYCGALGHGDEIDKTLPEPLSSLKSHLAVQVCARKRKTF 275 (375)
Q Consensus 198 ~p~~i~~~~~~~~~i~~i~~g--~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~p~~i~~~~~~~i~~i~~g~~~~~ 275 (375)
+. ...++.+|+.. .++..+++++|++|..=+.. . ....-..+. ....+..-..||++ ++
T Consensus 213 ----i~----~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf-~--------~~~~e~~~~-~~~~p~~~~WCG~d-av 273 (410)
T PF04841_consen 213 ----ID----SDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDF-S--------EKLCEFDTD-SKSPPKQMAWCGND-AV 273 (410)
T ss_pred ----cc----CCCCeEEEEECCCCCEEEEEECCCCEEEEECcc-c--------ceeEEeecC-cCCCCcEEEEECCC-cE
Confidence 11 11257776665 45777789999999863311 1 111001111 11222344467775 44
Q ss_pred EEEcCCcEEEEeC
Q 017198 276 VLVDTGSVYGFGW 288 (375)
Q Consensus 276 ~l~~~g~vy~~G~ 288 (375)
++.-+..|...|.
T Consensus 274 ~l~~~~~l~lvg~ 286 (410)
T PF04841_consen 274 VLSWEDELLLVGP 286 (410)
T ss_pred EEEeCCEEEEECC
Confidence 5544667888774
No 28
>PHA02713 hypothetical protein; Provisional
Probab=86.30 E-value=11 Score=37.20 Aligned_cols=21 Identities=5% Similarity=0.279 Sum_probs=14.0
Q ss_pred CCceEEEEEcCCcEEEeeCCC
Q 017198 58 SENHAAFVLQSGQVFTCGDNS 78 (375)
Q Consensus 58 g~~~~~~lt~~g~vy~~G~n~ 78 (375)
...+..+..-+|+||++|..+
T Consensus 341 ~R~~~~~~~~~g~IYviGG~~ 361 (557)
T PHA02713 341 NRCRFSLAVIDDTIYAIGGQN 361 (557)
T ss_pred hhhceeEEEECCEEEEECCcC
Confidence 344444555578999998754
No 29
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=86.04 E-value=5.9 Score=33.76 Aligned_cols=29 Identities=28% Similarity=0.538 Sum_probs=25.8
Q ss_pred CCEEEEEeCCCeEEEEECCCcEEEEeCCC
Q 017198 156 GSVVQIAAGPSYMLAVTGNGVVYSFGSGS 184 (375)
Q Consensus 156 ~~i~~i~~g~~~~~~lt~~g~v~~~G~n~ 184 (375)
.+++.+.|-..+.+++|.+|.+|+|-...
T Consensus 13 s~~~~l~~~~~~Ll~iT~~G~l~vWnl~~ 41 (219)
T PF07569_consen 13 SPVSFLECNGSYLLAITSSGLLYVWNLKK 41 (219)
T ss_pred CceEEEEeCCCEEEEEeCCCeEEEEECCC
Confidence 67888999999999999999999997644
No 30
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=85.67 E-value=22 Score=30.61 Aligned_cols=69 Identities=16% Similarity=0.200 Sum_probs=40.6
Q ss_pred cEEEEEcCC--CeEEEEeCCCCEEEEeCCCCCCCCCCCCCCcccCeeccCCCCCceEEEEecCCc--EEEEEcCCcEEEE
Q 017198 211 HVVRVSAGD--EHVVALDSSGYVYTWGKGYCGALGHGDEIDKTLPEPLSSLKSHLAVQVCARKRK--TFVLVDTGSVYGF 286 (375)
Q Consensus 211 ~i~~i~~g~--~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~p~~i~~~~~~~i~~i~~g~~~--~~~l~~~g~vy~~ 286 (375)
+|..|.... .+-+.-+.+|+|+.|-...+ .-.....|+.. ..|.+++...+- .++..+.|+.|+|
T Consensus 126 pVn~vvlhpnQteLis~dqsg~irvWDl~~~------~c~~~liPe~~-----~~i~sl~v~~dgsml~a~nnkG~cyvW 194 (311)
T KOG0315|consen 126 PVNTVVLHPNQTELISGDQSGNIRVWDLGEN------SCTHELIPEDD-----TSIQSLTVMPDGSMLAAANNKGNCYVW 194 (311)
T ss_pred CcceEEecCCcceEEeecCCCcEEEEEccCC------ccccccCCCCC-----cceeeEEEcCCCcEEEEecCCccEEEE
Confidence 455554444 34555588999999964221 11122333333 346666666554 4567788999999
Q ss_pred eCCC
Q 017198 287 GWMG 290 (375)
Q Consensus 287 G~n~ 290 (375)
-.-.
T Consensus 195 ~l~~ 198 (311)
T KOG0315|consen 195 RLLN 198 (311)
T ss_pred EccC
Confidence 8544
No 31
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=85.56 E-value=22 Score=30.29 Aligned_cols=136 Identities=12% Similarity=0.081 Sum_probs=64.5
Q ss_pred eEEEEEcCCcEEEeeCCCCCcccCCCCCCceecCEEccccCCcCeEEEEccCC-eEEEEEc-CCCEEEEeCCCCCcccCC
Q 017198 61 HAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGLN-FTGFLTI-RGHVHTCGSNTHGQLGHG 138 (375)
Q Consensus 61 ~~~~lt~~g~vy~~G~n~~gqlg~~~~~~~~~~p~~i~~~~~~~i~~v~~g~~-~~~~lt~-~g~v~~~G~n~~g~lg~~ 138 (375)
..++...+|.++.|-.... .....+.. ....|..+..... ..++... +|.|+.|-.......
T Consensus 65 ~l~~~~~~~~i~i~~~~~~------------~~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~--- 128 (289)
T cd00200 65 YLASGSSDKTIRLWDLETG------------ECVRTLTG-HTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCL--- 128 (289)
T ss_pred EEEEEcCCCeEEEEEcCcc------------cceEEEec-cCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEE---
Confidence 5556666889988865541 01111111 1123455544332 3344444 888888854321111
Q ss_pred CCCCCCcceeecCCCCCCCEEEEEeCC-CeEEEEEC-CCcEEEEeCCCCCccCCCCCCCccCceeeeccccCCccEEEEE
Q 017198 139 DTLDRPTPKSIAPLEEVGSVVQIAAGP-SYMLAVTG-NGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVS 216 (375)
Q Consensus 139 ~~~~~~~p~~~~~~~~~~~i~~i~~g~-~~~~~lt~-~g~v~~~G~n~~gqlg~~~~~~~~~p~~i~~~~~~~~~i~~i~ 216 (375)
..+.. ....|..++... ...++... ++.|+.|-.... ..+..+......|..+.
T Consensus 129 --------~~~~~--~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~--------------~~~~~~~~~~~~i~~~~ 184 (289)
T cd00200 129 --------TTLRG--HTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTG--------------KCVATLTGHTGEVNSVA 184 (289)
T ss_pred --------EEecc--CCCcEEEEEEcCcCCEEEEEcCCCcEEEEEcccc--------------ccceeEecCccccceEE
Confidence 11111 113566666655 23333333 888998865311 01111111122344554
Q ss_pred cCCC--eEEEEeCCCCEEEEeC
Q 017198 217 AGDE--HVVALDSSGYVYTWGK 236 (375)
Q Consensus 217 ~g~~--~~~~lt~~g~v~~~G~ 236 (375)
...+ ..++...+|.++.|-.
T Consensus 185 ~~~~~~~l~~~~~~~~i~i~d~ 206 (289)
T cd00200 185 FSPDGEKLLSSSSDGTIKLWDL 206 (289)
T ss_pred ECCCcCEEEEecCCCcEEEEEC
Confidence 4433 4555556888888854
No 32
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=85.06 E-value=29 Score=32.23 Aligned_cols=124 Identities=15% Similarity=0.194 Sum_probs=58.5
Q ss_pred ecCCCCCCEEEEecCCc-eE-EEEEcCCc-EEEeeCCCCCcccCCCCCCceecCEEccccCCcCeEEEEccCCe-EEEEE
Q 017198 44 INFPSAAHVVQVSASEN-HA-AFVLQSGQ-VFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGLNF-TGFLT 119 (375)
Q Consensus 44 ~~~~~~~~i~~i~~g~~-~~-~~lt~~g~-vy~~G~n~~gqlg~~~~~~~~~~p~~i~~~~~~~i~~v~~g~~~-~~~lt 119 (375)
++......+..|..|.. |. ++.+.||+ +|+.++. |.+ ..+.......+..|..|... .++++
T Consensus 21 iD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rd--g~v------------sviD~~~~~~v~~i~~G~~~~~i~~s 86 (369)
T PF02239_consen 21 IDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRD--GTV------------SVIDLATGKVVATIKVGGNPRGIAVS 86 (369)
T ss_dssp EETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETT--SEE------------EEEETTSSSEEEEEE-SSEEEEEEE-
T ss_pred EECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCC--CeE------------EEEECCcccEEEEEecCCCcceEEEc
Confidence 34444446777777654 44 45677786 8887643 221 23344445567777776654 67788
Q ss_pred cCCCEEEEeCCCCCcccCCCCCCCCcceeecCC-----CCCCCEEEEEeCC---CeEEEEECCCcEEEEe
Q 017198 120 IRGHVHTCGSNTHGQLGHGDTLDRPTPKSIAPL-----EEVGSVVQIAAGP---SYMLAVTGNGVVYSFG 181 (375)
Q Consensus 120 ~~g~v~~~G~n~~g~lg~~~~~~~~~p~~~~~~-----~~~~~i~~i~~g~---~~~~~lt~~g~v~~~G 181 (375)
.||+...-+....+++..-+......-..++.. ....++..|.... .+.+.+.+.+++|..-
T Consensus 87 ~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVd 156 (369)
T PF02239_consen 87 PDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVD 156 (369)
T ss_dssp -TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEE
T ss_pred CCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEE
Confidence 999855544333333322111111111111111 0124566665432 3667778889998764
No 33
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=83.77 E-value=51 Score=33.15 Aligned_cols=111 Identities=15% Similarity=0.076 Sum_probs=62.2
Q ss_pred EEEEECCCcEEEEeCCCCCccCCCCCCCccCceeeeccccCCccEEEEEcCCCeEEEEe--CCCCEEEEeCCCCCCCCCC
Q 017198 168 MLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGDEHVVALD--SSGYVYTWGKGYCGALGHG 245 (375)
Q Consensus 168 ~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~p~~i~~~~~~~~~i~~i~~g~~~~~~lt--~~g~v~~~G~n~~gqlg~~ 245 (375)
++++...|.-.++|...-|||..-+......-.+.. ..-..|..++-..+-.++.| +||+|-.|-..+...
T Consensus 312 t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQ---gH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC---- 384 (893)
T KOG0291|consen 312 TVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQ---GHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFC---- 384 (893)
T ss_pred EEEecccCCEEEEcCCccceEEEEEeeccceeeecc---ccccceeeEEECCCCcEEEeccCCCcEEEEeccCceE----
Confidence 344556677777787777777654433222111111 11124566655555444443 677888875432110
Q ss_pred CCCCcccCeeccCCCCCceEEEEecCCcEEEEEcCCcEEEEeCCCC
Q 017198 246 DEIDKTLPEPLSSLKSHLAVQVCARKRKTFVLVDTGSVYGFGWMGF 291 (375)
Q Consensus 246 ~~~~~~~p~~i~~~~~~~i~~i~~g~~~~~~l~~~g~vy~~G~n~~ 291 (375)
.-+.-+.-.....+++..-.+..+..+-||+|-.|--.+|
T Consensus 385 ------~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRY 424 (893)
T KOG0291|consen 385 ------FVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRY 424 (893)
T ss_pred ------EEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeeccc
Confidence 1111112234456777777787888889999999986654
No 34
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=83.57 E-value=39 Score=31.70 Aligned_cols=154 Identities=11% Similarity=0.067 Sum_probs=74.5
Q ss_pred CEEEEecCCc--eEEEEEcCCcEEEeeCCCCCcccCCCCCCceecCEEccccCCcCeEEEEccCCeEEEEEcCCCEEEEe
Q 017198 51 HVVQVSASEN--HAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGLNFTGFLTIRGHVHTCG 128 (375)
Q Consensus 51 ~i~~i~~g~~--~~~~lt~~g~vy~~G~n~~gqlg~~~~~~~~~~p~~i~~~~~~~i~~v~~g~~~~~~lt~~g~v~~~G 128 (375)
++.-+++... +.++=|..|+||.|--+..-.|-. .....+.....+++--..|.+--.+||.|.+|-
T Consensus 83 ~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v-----------~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~ 151 (476)
T KOG0646|consen 83 PVHALASSNLGYFLLAGTISGNLYLWELSSGILLNV-----------LSAHYQSITCLKFSDDGSHIITGSKDGAVLVWL 151 (476)
T ss_pred ceeeeecCCCceEEEeecccCcEEEEEeccccHHHH-----------HHhhccceeEEEEeCCCcEEEecCCCccEEEEE
Confidence 5666666543 334444689999997666322211 112223333344444455555567889999995
Q ss_pred CCCCCcccCCCCCCCCcceeecCCCCC-CCEEEEEeCCCe----EEEEECCCcEEEEeCCCCCccCCCCCCCccCceeee
Q 017198 129 SNTHGQLGHGDTLDRPTPKSIAPLEEV-GSVVQIAAGPSY----MLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQ 203 (375)
Q Consensus 129 ~n~~g~lg~~~~~~~~~p~~~~~~~~~-~~i~~i~~g~~~----~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~p~~i~ 203 (375)
.-+. -.......|..+..+.+- -.|+++.+|..- .+-...|..+-+|-... -..+.
T Consensus 152 l~~l-----v~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~--------------g~LLl 212 (476)
T KOG0646|consen 152 LTDL-----VSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSL--------------GVLLL 212 (476)
T ss_pred EEee-----cccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEecc--------------ceeeE
Confidence 3211 111122244444443321 468888887653 11223344444443211 01111
Q ss_pred cc-ccCCccEEEEEcCCCeEEEEeCCCCEEEE
Q 017198 204 TF-RRKGIHVVRVSAGDEHVVALDSSGYVYTW 234 (375)
Q Consensus 204 ~~-~~~~~~i~~i~~g~~~~~~lt~~g~v~~~ 234 (375)
.+ .+...+-+.+..+..+.++=+++|++|.-
T Consensus 213 ti~fp~si~av~lDpae~~~yiGt~~G~I~~~ 244 (476)
T KOG0646|consen 213 TITFPSSIKAVALDPAERVVYIGTEEGKIFQN 244 (476)
T ss_pred EEecCCcceeEEEcccccEEEecCCcceEEee
Confidence 11 11211233344456666777888887753
No 35
>PLN02153 epithiospecifier protein
Probab=82.64 E-value=39 Score=30.91 Aligned_cols=16 Identities=6% Similarity=0.287 Sum_probs=11.9
Q ss_pred eeEEEeCCcEEEEeCC
Q 017198 9 HTLLISNSSVFSCGSS 24 (375)
Q Consensus 9 ~~~~l~~g~l~~wG~n 24 (375)
|+++.-+++||++|-.
T Consensus 79 ~~~~~~~~~iyv~GG~ 94 (341)
T PLN02153 79 VRMVAVGTKLYIFGGR 94 (341)
T ss_pred eEEEEECCEEEEECCC
Confidence 4444578899999964
No 36
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=82.24 E-value=59 Score=32.75 Aligned_cols=123 Identities=10% Similarity=0.010 Sum_probs=64.3
Q ss_pred CEEEEecCCce--EEEEEcCCcEEEeeCCCCCcccCCCCCCceecCEEccccCCcCeEEEEccCC--eEEEEEcCCCEEE
Q 017198 51 HVVQVSASENH--AAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGLN--FTGFLTIRGHVHT 126 (375)
Q Consensus 51 ~i~~i~~g~~~--~~~lt~~g~vy~~G~n~~gqlg~~~~~~~~~~p~~i~~~~~~~i~~v~~g~~--~~~~lt~~g~v~~ 126 (375)
-|-+++.+..- ++.+...|...++|....|||..-.=-...+..+..-... ++..+..... ..+.=.+||+|-+
T Consensus 299 lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~--~i~~l~YSpDgq~iaTG~eDgKVKv 376 (893)
T KOG0291|consen 299 LIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSD--RITSLAYSPDGQLIATGAEDGKVKV 376 (893)
T ss_pred EEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccceeeecccccc--ceeeEEECCCCcEEEeccCCCcEEE
Confidence 44555555433 4555556888888888888887443211111111111122 2333333333 3333346777777
Q ss_pred EeCCCCCcccCCCCCCCCcceeecCCCCCCCEEEEEeCCCeEEEEECCCcEEEEeCCCCC
Q 017198 127 CGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGPSYMLAVTGNGVVYSFGSGSNF 186 (375)
Q Consensus 127 ~G~n~~g~lg~~~~~~~~~p~~~~~~~~~~~i~~i~~g~~~~~~lt~~g~v~~~G~n~~g 186 (375)
|-..+.-++ +-..........++.+.-.+..+-..-||.|-+|-...|.
T Consensus 377 Wn~~SgfC~-----------vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYr 425 (893)
T KOG0291|consen 377 WNTQSGFCF-----------VTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYR 425 (893)
T ss_pred EeccCceEE-----------EEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccc
Confidence 743321111 1111111223456666767777778889999999877653
No 37
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=81.50 E-value=29 Score=34.41 Aligned_cols=196 Identities=13% Similarity=0.170 Sum_probs=87.0
Q ss_pred eeEEEeCCcEEEEeCCCCCccCCCCCCCeeeeeeeecCCCCC--CEEEEecCCceEEEEEcCCcEEEeeCCCCCcccCCC
Q 017198 9 HTLLISNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAA--HVVQVSASENHAAFVLQSGQVFTCGDNSSFCCGHRD 86 (375)
Q Consensus 9 ~~~~l~~g~l~~wG~n~~g~Lg~~~~~~~~~~~~~~~~~~~~--~i~~i~~g~~~~~~lt~~g~vy~~G~n~~gqlg~~~ 86 (375)
+++++-+|.||+.|--+. |...... ....+...+. .+-.+...+....+-.-+|.||+.|--+ |.-....
T Consensus 326 ~~~~~~~~~lYv~GG~~~---~~~~l~~----ve~YD~~~~~W~~~a~M~~~R~~~~v~~l~g~iYavGG~d-g~~~l~s 397 (571)
T KOG4441|consen 326 VGVAVLNGKLYVVGGYDS---GSDRLSS----VERYDPRTNQWTPVAPMNTKRSDFGVAVLDGKLYAVGGFD-GEKSLNS 397 (571)
T ss_pred ccEEEECCEEEEEccccC---CCcccce----EEEecCCCCceeccCCccCccccceeEEECCEEEEEeccc-ccccccc
Confidence 444448889999996543 1111111 1111111111 2333444555555666679999997555 2211111
Q ss_pred CCCceecCEEccccCCcCeEEEEccCCeEEEEEcCCCEEEEeCCCCCcccCCCC----CCCCcceeecCCCCCCCEEEEE
Q 017198 87 TNRPIFRPRLVEALKGVPCKQVTAGLNFTGFLTIRGHVHTCGSNTHGQLGHGDT----LDRPTPKSIAPLEEVGSVVQIA 162 (375)
Q Consensus 87 ~~~~~~~p~~i~~~~~~~i~~v~~g~~~~~~lt~~g~v~~~G~n~~g~lg~~~~----~~~~~p~~~~~~~~~~~i~~i~ 162 (375)
. ..+.|..-. .. .+-.+........+..-+|+||+.|......--..+. +....+..++....
T Consensus 398 v--E~YDp~~~~-W~--~va~m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~-------- 464 (571)
T KOG4441|consen 398 V--ECYDPVTNK-WT--PVAPMLTRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNT-------- 464 (571)
T ss_pred E--EEecCCCCc-cc--ccCCCCcceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCceeecCCccc--------
Confidence 1 111121110 00 0111222344445566699999998643322000000 00112222222210
Q ss_pred eCCCeEEEEECCCcEEEEeCCCCCccCCCCCCCccCceeeeccccCCccEEEE---EcCCCeEEEEeCCCCEEEEeC
Q 017198 163 AGPSYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRV---SAGDEHVVALDSSGYVYTWGK 236 (375)
Q Consensus 163 ~g~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~p~~i~~~~~~~~~i~~i---~~g~~~~~~lt~~g~v~~~G~ 236 (375)
.-..+. +..-++.||+.|.... + .....++.+.....+...+ .....+.-+...++++|+-|-
T Consensus 465 ~R~~~g-~a~~~~~iYvvGG~~~-~---------~~~~~VE~ydp~~~~W~~v~~m~~~rs~~g~~~~~~~ly~vGG 530 (571)
T KOG4441|consen 465 RRSGFG-VAVLNGKIYVVGGFDG-T---------SALSSVERYDPETNQWTMVAPMTSPRSAVGVVVLGGKLYAVGG 530 (571)
T ss_pred ccccce-EEEECCEEEEECCccC-C---------CccceEEEEcCCCCceeEcccCccccccccEEEECCEEEEEec
Confidence 011233 4444889999987442 1 0111122222222234333 334555556677889999875
No 38
>PRK05560 DNA gyrase subunit A; Validated
Probab=81.16 E-value=73 Score=33.13 Aligned_cols=218 Identities=14% Similarity=0.127 Sum_probs=108.0
Q ss_pred ecCCceEEEEEcCCcEEEeeCCCCCcccCCCCCCceecCEEccccCCcCeEEEEccC-----CeEEEEEcCCCEEEEeCC
Q 017198 56 SASENHAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGL-----NFTGFLTIRGHVHTCGSN 130 (375)
Q Consensus 56 ~~g~~~~~~lt~~g~vy~~G~n~~gqlg~~~~~~~~~~p~~i~~~~~~~i~~v~~g~-----~~~~~lt~~g~v~~~G~n 130 (375)
....+..+++|+.|++|..-...--..+..... ......+....+.+|+.+.+-. ...+++|++|.+--.-.+
T Consensus 545 ~~t~d~LllfTs~Grv~~l~v~~iP~~~~~~~G--~~i~~ll~L~~~E~Iv~~i~~~~~~~e~~lvlvTk~GyiKRi~l~ 622 (805)
T PRK05560 545 ASTHDTLLFFTNRGRVYRLKVYEIPEASRTARG--RPIVNLLPLEPGEKITAILPVREFDDDKYLFFATKNGTVKKTSLS 622 (805)
T ss_pred ecCCCeEEEEecCCeEEEEEhhhCcCCCcCCCC--eEHHHhcCCCCCceEEEEEeccCCCCCCEEEEEeCCCEEEEEEhH
Confidence 345677899999999999865532111111111 1111123334566677776644 357888999977755433
Q ss_pred CCCcccCCCCCCCCcceeecCCCCCCCEEEEEeC--CCeEEEEECCCcEEEEeCCCCCccCCCCCCCccCceeeeccccC
Q 017198 131 THGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAG--PSYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRK 208 (375)
Q Consensus 131 ~~g~lg~~~~~~~~~p~~~~~~~~~~~i~~i~~g--~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~p~~i~~~~~~ 208 (375)
.+.....+ ......+.....++.+... ..+.+++|++|+++.+-...-...+... ....+..+. .
T Consensus 623 ~~~~~~r~-------G~~~ikLke~D~lv~v~~~~~~d~lll~T~~Gr~~r~~~~eIp~~gr~~-----~Gv~~i~L~-~ 689 (805)
T PRK05560 623 EFSNIRSN-------GIIAINLDEGDELIGVRLTDGDDDILLATKNGKAIRFPESDVRPMGRTA-----RGVRGIKLR-E 689 (805)
T ss_pred HhhhcccC-------CceeeccCCCCEEEEEEEeCCCCEEEEEECCCcEEEEEhhhcCccCccc-----CCcccccCC-C
Confidence 32211000 1111112222455544433 4578999999999998765443333211 122222232 3
Q ss_pred CccEEEEEcCC---CeEEEEeCCCCEEEEeCCCCCCCCCCCCCCcccCeeccCCCCCceEEE--EecCCcEEEEEcCCcE
Q 017198 209 GIHVVRVSAGD---EHVVALDSSGYVYTWGKGYCGALGHGDEIDKTLPEPLSSLKSHLAVQV--CARKRKTFVLVDTGSV 283 (375)
Q Consensus 209 ~~~i~~i~~g~---~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~p~~i~~~~~~~i~~i--~~g~~~~~~l~~~g~v 283 (375)
+.+|+.+..-. .+.+++|+.|.+.-.-.+.+-....+....... +.. ..+..++.+ ..+++..++++.+|++
T Consensus 690 ~E~Vv~~~~v~~~~~~il~vTk~G~iKr~~l~e~~~~~R~~kG~~~l--kl~-~~~d~lv~v~~v~~~~~v~i~T~~G~~ 766 (805)
T PRK05560 690 GDEVVSMDVVREDSQEILTVTENGYGKRTPVSEYRLQGRGGKGVITI--KIT-EKNGKLVGALPVDDDDEIMLITDSGKL 766 (805)
T ss_pred CCEEEEEEEEcCCCcEEEEEEeCCeEEEEEHHHhhccCCCCCcEEee--ecc-CCCCeEEEEEEecCCCeEEEEecCCeE
Confidence 34566655432 257778888876655332221111111000000 010 001233332 2345567888899988
Q ss_pred EEEeCCCC
Q 017198 284 YGFGWMGF 291 (375)
Q Consensus 284 y~~G~n~~ 291 (375)
..+-.+.-
T Consensus 767 lrf~~~eI 774 (805)
T PRK05560 767 IRTRVSEI 774 (805)
T ss_pred EEEEHHHC
Confidence 87765443
No 39
>TIGR01063 gyrA DNA gyrase, A subunit. This model describes the common type II DNA topoisomerase (DNA gyrase). Two apparently independently arising families, one in the Proteobacteria and one in Gram-positive lineages, are both designated toposisomerase IV.
Probab=79.61 E-value=82 Score=32.75 Aligned_cols=216 Identities=10% Similarity=0.066 Sum_probs=105.2
Q ss_pred cCCceEEEEEcCCcEEEeeCCCCCcccCCCCCCceecCEEccccCCcCeEEEEcc-----CCeEEEEEcCCCEEEEeCCC
Q 017198 57 ASENHAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAG-----LNFTGFLTIRGHVHTCGSNT 131 (375)
Q Consensus 57 ~g~~~~~~lt~~g~vy~~G~n~~gqlg~~~~~~~~~~p~~i~~~~~~~i~~v~~g-----~~~~~~lt~~g~v~~~G~n~ 131 (375)
...+..++.|++|++|..-...--..+..... ......+....+.+|+.+.+- ....+++|++|.+--.-.+.
T Consensus 544 ~t~d~LllfTs~Grv~~l~~~~IP~~~r~~~G--~~i~~ll~L~~~E~Iv~~i~~~~~~~~~~lvliT~~GyiKRi~l~~ 621 (800)
T TIGR01063 544 STHDYLLFFTNRGKVYWLKVYQIPEASRTAKG--KPIVNLLPLQPDERITAILSVKEFDDGLYLFFATKNGVVKKTSLTE 621 (800)
T ss_pred cCCCeEEEEeCCCcEEEEEhhhCcCCCcCCCC--cCHHHhccCCCCCeEEEEEEeccCCCCCEEEEEeCCCEEEEEEhHH
Confidence 45677899999999999844332111111111 111112233345566666552 23577889999777654433
Q ss_pred CCcccCCCCCCCCcceeecCCCCCCCEEEEEeC--CCeEEEEECCCcEEEEeCCCCCccCCCCCCCccCceeeeccccCC
Q 017198 132 HGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAG--PSYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKG 209 (375)
Q Consensus 132 ~g~lg~~~~~~~~~p~~~~~~~~~~~i~~i~~g--~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~p~~i~~~~~~~ 209 (375)
+..... .......+...+.++.+... ..+.+++|++|+++.+-...-...+... ....+..+. .+
T Consensus 622 ~~~~~r-------~G~~aiklke~D~lv~v~~~~~~d~lll~Ts~Gr~~r~~v~eIp~~gr~~-----~Gv~~i~L~-~~ 688 (800)
T TIGR01063 622 FSNIRS-------NGIIAIKLDDGDELISVRLTSGDDEVMLGSKNGKAVRFPEEDVRPMGRAA-----RGVRGIKLK-NE 688 (800)
T ss_pred hhhhcc-------CCcccccCCCCCEEEEEEEeCCCCEEEEEECCCcEEEEEhhhcCCcCCCC-----CCeecccCC-CC
Confidence 221100 11111111222455544433 4578999999999999776554443322 122222222 23
Q ss_pred ccEEEEEcC--CCeEEEEeCCCCEEEEeCCCCCCCCCCCCCCcccCeeccCCCCCceEEE--EecCCcEEEEEcCCcEEE
Q 017198 210 IHVVRVSAG--DEHVVALDSSGYVYTWGKGYCGALGHGDEIDKTLPEPLSSLKSHLAVQV--CARKRKTFVLVDTGSVYG 285 (375)
Q Consensus 210 ~~i~~i~~g--~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~p~~i~~~~~~~i~~i--~~g~~~~~~l~~~g~vy~ 285 (375)
.+|+.+..- ..+.+++|++|.+.-.=...+-....+....... ++.. .+..++.+ .-.++..++++++|++..
T Consensus 689 E~Vv~~~~v~~~~~ll~vT~~G~~Kr~~l~e~~~~~R~~kGv~~i--kl~~-~~d~lv~~~~v~~~~~v~liT~~G~~lr 765 (800)
T TIGR01063 689 DFVVSLLVVSEESYLLIVTENGYGKRTSIEEYRETSRGGKGVKSI--KITD-RNGQVVGAIAVDDDDELMLITSAGKLIR 765 (800)
T ss_pred CEEEEEEEeccccEEEEEecCCcEEEEEHHHccccCCCCcceEEE--EccC-CCCeEEEEEEecCCCeEEEEecCCeEEE
Confidence 356655542 3356778888877665432222111111000000 0100 01223322 223445788888898877
Q ss_pred EeCCC
Q 017198 286 FGWMG 290 (375)
Q Consensus 286 ~G~n~ 290 (375)
+-.++
T Consensus 766 f~~~e 770 (800)
T TIGR01063 766 TSVQD 770 (800)
T ss_pred eeHhh
Confidence 65443
No 40
>smart00706 TECPR Beta propeller repeats in Physarum polycephalum tectonins, Limulus lectin L-6 and animal hypothetical proteins.
Probab=77.87 E-value=7.2 Score=22.03 Aligned_cols=25 Identities=36% Similarity=0.713 Sum_probs=22.4
Q ss_pred CCEEEEEeCC-CeEEEEECCCcEEEE
Q 017198 156 GSVVQIAAGP-SYMLAVTGNGVVYSF 180 (375)
Q Consensus 156 ~~i~~i~~g~-~~~~~lt~~g~v~~~ 180 (375)
.++++|++|. +...+++.+|.||..
T Consensus 8 g~l~~isvg~~~~vW~V~~~g~i~~r 33 (35)
T smart00706 8 GELVQVSVGPSDTVWAVNSDGNIYRR 33 (35)
T ss_pred CCEEEEEECCCCeEEEEcCCCCEEEE
Confidence 5799999999 999999999999964
No 41
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=76.42 E-value=54 Score=28.93 Aligned_cols=99 Identities=15% Similarity=0.174 Sum_probs=59.0
Q ss_pred CCeeEEE-eCCcEEEEeCCCCCccCCCCCCCeeeeeeeecCCCCCCEEEEecCCceEEEEEcCCcEEEeeCCCC-CcccC
Q 017198 7 RYHTLLI-SNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSASENHAAFVLQSGQVFTCGDNSS-FCCGH 84 (375)
Q Consensus 7 ~~~~~~l-~~g~l~~wG~n~~g~Lg~~~~~~~~~~~~~~~~~~~~~i~~i~~g~~~~~~lt~~g~vy~~G~n~~-gqlg~ 84 (375)
.-|.+++ .||..|++-... ++.....+....++..++ .+..-++-.+.+++.+|+||..|.+.+ |.|-.
T Consensus 105 ~Phgiv~gpdg~~Witd~~~----aI~R~dpkt~evt~f~lp-----~~~a~~nlet~vfD~~G~lWFt~q~G~yGrLdP 175 (353)
T COG4257 105 SPHGIVVGPDGSAWITDTGL----AIGRLDPKTLEVTRFPLP-----LEHADANLETAVFDPWGNLWFTGQIGAYGRLDP 175 (353)
T ss_pred CCceEEECCCCCeeEecCcc----eeEEecCcccceEEeecc-----cccCCCcccceeeCCCccEEEeeccccceecCc
Confidence 4588888 999999997653 232222222334444444 455556778899999999999987542 32221
Q ss_pred CCCCCceecCEEccccCCcCeEEEEccCCeEEEEEcCCCEEEE
Q 017198 85 RDTNRPIFRPRLVEALKGVPCKQVTAGLNFTGFLTIRGHVHTC 127 (375)
Q Consensus 85 ~~~~~~~~~p~~i~~~~~~~i~~v~~g~~~~~~lt~~g~v~~~ 127 (375)
.... -.....+. .+.-.-++.|-||+||.-
T Consensus 176 a~~~-----i~vfpaPq--------G~gpyGi~atpdGsvwya 205 (353)
T COG4257 176 ARNV-----ISVFPAPQ--------GGGPYGICATPDGSVWYA 205 (353)
T ss_pred ccCc-----eeeeccCC--------CCCCcceEECCCCcEEEE
Confidence 1110 00111111 234455788999999986
No 42
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=75.99 E-value=98 Score=31.69 Aligned_cols=119 Identities=18% Similarity=0.156 Sum_probs=58.5
Q ss_pred eeEEE-eCCcEEEEeCCCCCccCCC--CCC----Ce--eeeeeeecCCCC-CCEEEEecCCceE-EEEEcCCcEEE----
Q 017198 9 HTLLI-SNSSVFSCGSSLCGVLGHG--PET----TQ--CVSFTRINFPSA-AHVVQVSASENHA-AFVLQSGQVFT---- 73 (375)
Q Consensus 9 ~~~~l-~~g~l~~wG~n~~g~Lg~~--~~~----~~--~~~~~~~~~~~~-~~i~~i~~g~~~~-~~lt~~g~vy~---- 73 (375)
..++. .|+.||+|=.+....+-.. ... .. ....+.+..+.. -.|.+|..+.... ++|.-...|.+
T Consensus 34 rNLl~~~d~~L~vWd~~e~~l~~~nlr~~~~~~~~~~~~~~q~L~~~~~~~f~v~~i~~n~~g~~lal~G~~~v~V~~LP 113 (717)
T PF10168_consen 34 RNLLACRDGDLFVWDSSECCLLTVNLRSLESDAEGPAKSSYQKLLPSNPPLFEVHQISLNPTGSLLALVGPRGVVVLELP 113 (717)
T ss_pred eeeEEEeCCEEEEEECCCCEEEEEeeccccccccCccccCcceeecCCCCceeEEEEEECCCCCEEEEEcCCcEEEEEec
Confidence 34444 8999999998876553321 111 00 111111111111 2777777664433 44444444433
Q ss_pred --eeCCCCCcccCCCCCCceecCE---EccccCCcCeEEEE-----ccCCeEEEEEcCCCEEEEe
Q 017198 74 --CGDNSSFCCGHRDTNRPIFRPR---LVEALKGVPCKQVT-----AGLNFTGFLTIRGHVHTCG 128 (375)
Q Consensus 74 --~G~n~~gqlg~~~~~~~~~~p~---~i~~~~~~~i~~v~-----~g~~~~~~lt~~g~v~~~G 128 (375)
||.+...+.|.... .....|. ....-....|.++. ....|.++||+|+.+-.+-
T Consensus 114 ~r~g~~~~~~~g~~~i-~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~ 177 (717)
T PF10168_consen 114 RRWGKNGEFEDGKKEI-NCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSHLVVLTSDNTLRLYD 177 (717)
T ss_pred cccCccccccCCCcce-eEEEEEechhhccCCCCceEEEEEEcCCCCCCCeEEEEecCCEEEEEe
Confidence 55554333332211 1111111 11122344677774 4578999999999866553
No 43
>smart00706 TECPR Beta propeller repeats in Physarum polycephalum tectonins, Limulus lectin L-6 and animal hypothetical proteins.
Probab=75.89 E-value=6.1 Score=22.32 Aligned_cols=24 Identities=17% Similarity=0.120 Sum_probs=21.1
Q ss_pred CeEEEEccC-CeEEEEEcCCCEEEE
Q 017198 104 PCKQVTAGL-NFTGFLTIRGHVHTC 127 (375)
Q Consensus 104 ~i~~v~~g~-~~~~~lt~~g~v~~~ 127 (375)
.+++|++|. ....+++.+|.+|..
T Consensus 9 ~l~~isvg~~~~vW~V~~~g~i~~r 33 (35)
T smart00706 9 ELVQVSVGPSDTVWAVNSDGNIYRR 33 (35)
T ss_pred CEEEEEECCCCeEEEEcCCCCEEEE
Confidence 689999999 888899999999863
No 44
>COG5308 NUP170 Nuclear pore complex subunit [Intracellular trafficking and secretion]
Probab=73.13 E-value=79 Score=32.73 Aligned_cols=64 Identities=14% Similarity=0.150 Sum_probs=31.8
Q ss_pred EEE-eCCcEEEEeCCCCCccCCCCCCCeeeeeeeecCCCCCCEEEEecCCceEEEEEcCCcEEEeeCC
Q 017198 11 LLI-SNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSASENHAAFVLQSGQVFTCGDN 77 (375)
Q Consensus 11 ~~l-~~g~l~~wG~n~~g~Lg~~~~~~~~~~~~~~~~~~~~~i~~i~~g~~~~~~lt~~g~vy~~G~n 77 (375)
+-+ .|+++..|-.|+....-.-++-........+--|....++ ..-.|.+++...-++|..|-.
T Consensus 96 cWiT~dnkLiLWnynn~neyq~idd~shtIlkVkLvrPkantFv---s~i~hlL~vAT~~e~~ilgvs 160 (1263)
T COG5308 96 CWITNDNKLILWNYNNSNEYQEIDDFSHTILKVKLVRPKANTFV---SRISHLLFVATEKEVMILGVS 160 (1263)
T ss_pred eEEEcCCEEEEEecCCCcchhhhhhhhhheeEEEEeccCCcccH---HhhhhhhhhhhhheeeEEEEE
Confidence 345 8999999998853332111111111111111111111111 124677888888888888743
No 45
>PHA03098 kelch-like protein; Provisional
Probab=72.87 E-value=99 Score=30.30 Aligned_cols=15 Identities=13% Similarity=0.295 Sum_probs=11.0
Q ss_pred eEEEeCCcEEEEeCC
Q 017198 10 TLLISNSSVFSCGSS 24 (375)
Q Consensus 10 ~~~l~~g~l~~wG~n 24 (375)
.++..++.||+.|-.
T Consensus 289 ~~~~~~~~lyv~GG~ 303 (534)
T PHA03098 289 GSVVLNNVIYFIGGM 303 (534)
T ss_pred eEEEECCEEEEECCC
Confidence 344488899999954
No 46
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=71.80 E-value=66 Score=27.80 Aligned_cols=78 Identities=14% Similarity=0.271 Sum_probs=40.9
Q ss_pred CCEEEEEeCCCeEEEEECCCcEEEEeCCCCCc-cCCCCCCCccCceeeeccccCCccEEEEEc--CCCeEEEEeCCCCEE
Q 017198 156 GSVVQIAAGPSYMLAVTGNGVVYSFGSGSNFC-LGHGEQHDELQPRAIQTFRRKGIHVVRVSA--GDEHVVALDSSGYVY 232 (375)
Q Consensus 156 ~~i~~i~~g~~~~~~lt~~g~v~~~G~n~~gq-lg~~~~~~~~~p~~i~~~~~~~~~i~~i~~--g~~~~~~lt~~g~v~ 232 (375)
.+|-.++.-+.|-+.- -+|.||.|-+++.-. ++....-....|.+....+.. .|..+.. ..+..++.--|+.+|
T Consensus 63 gpiy~~~f~d~~Lls~-gdG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evP--eINam~ldP~enSi~~AgGD~~~y 139 (325)
T KOG0649|consen 63 GPIYYLAFHDDFLLSG-GDGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVP--EINAMWLDPSENSILFAGGDGVIY 139 (325)
T ss_pred CCeeeeeeehhheeec-cCceEEEeeehhhhhhccchhhhhhcCccccCcccCC--ccceeEeccCCCcEEEecCCeEEE
Confidence 5677777766655444 469999999987654 433333334444444222111 2333322 223333334566777
Q ss_pred EEeC
Q 017198 233 TWGK 236 (375)
Q Consensus 233 ~~G~ 236 (375)
+|-.
T Consensus 140 ~~dl 143 (325)
T KOG0649|consen 140 QVDL 143 (325)
T ss_pred EEEe
Confidence 7753
No 47
>PHA02713 hypothetical protein; Provisional
Probab=71.43 E-value=33 Score=33.93 Aligned_cols=16 Identities=13% Similarity=0.362 Sum_probs=11.9
Q ss_pred eeEEE-eCCcEEEEeCC
Q 017198 9 HTLLI-SNSSVFSCGSS 24 (375)
Q Consensus 9 ~~~~l-~~g~l~~wG~n 24 (375)
+..+. -+|+||++|-.
T Consensus 344 ~~~~~~~~g~IYviGG~ 360 (557)
T PHA02713 344 RFSLAVIDDTIYAIGGQ 360 (557)
T ss_pred ceeEEEECCEEEEECCc
Confidence 33444 89999999975
No 48
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=64.87 E-value=1.2e+02 Score=28.07 Aligned_cols=57 Identities=19% Similarity=0.225 Sum_probs=29.3
Q ss_pred CCeEEEEeCCCCEEEEeCCCCCCCCCCCCCCcccCeeccCCCCCceEEEEecCCcEEEEEcCCcEEEE
Q 017198 219 DEHVVALDSSGYVYTWGKGYCGALGHGDEIDKTLPEPLSSLKSHLAVQVCARKRKTFVLVDTGSVYGF 286 (375)
Q Consensus 219 ~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~p~~i~~~~~~~i~~i~~g~~~~~~l~~~g~vy~~ 286 (375)
..+.++.+.+|.||++-... |++ ..-.++.. ......-+.-+.+.++.+.+|+||++
T Consensus 320 g~~l~~~~~~G~l~~~d~~t-G~~--------~~~~~~~~--~~~~~sp~~~~~~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 320 GGYLVVGDFEGYLHWLSRED-GSF--------VARLKTDG--SGIASPPVVVGDGLLVQTRDGDLYAF 376 (377)
T ss_pred CCEEEEEeCCCEEEEEECCC-CCE--------EEEEEcCC--CccccCCEEECCEEEEEeCCceEEEe
Confidence 35677778889999885422 111 00000000 00011112224567788899999986
No 49
>PHA03098 kelch-like protein; Provisional
Probab=64.69 E-value=1.1e+02 Score=30.04 Aligned_cols=18 Identities=11% Similarity=0.242 Sum_probs=12.7
Q ss_pred CeeEEEeCCcEEEEeCCC
Q 017198 8 YHTLLISNSSVFSCGSSL 25 (375)
Q Consensus 8 ~~~~~l~~g~l~~wG~n~ 25 (375)
.|+++.-+++||++|-..
T Consensus 335 ~~~~~~~~~~lyv~GG~~ 352 (534)
T PHA03098 335 NPGVTVFNNRIYVIGGIY 352 (534)
T ss_pred cceEEEECCEEEEEeCCC
Confidence 344444889999999643
No 50
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=63.60 E-value=92 Score=28.96 Aligned_cols=17 Identities=18% Similarity=0.272 Sum_probs=13.7
Q ss_pred CeeEEE-eCCcEEEEeCC
Q 017198 8 YHTLLI-SNSSVFSCGSS 24 (375)
Q Consensus 8 ~~~~~l-~~g~l~~wG~n 24 (375)
.|+++. .+++||++|-.
T Consensus 131 ~~~~~~~~~~~IYv~GG~ 148 (376)
T PRK14131 131 GHVAVSLHNGKAYITGGV 148 (376)
T ss_pred ceEEEEeeCCEEEEECCC
Confidence 466666 89999999974
No 51
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=61.63 E-value=1.3e+02 Score=27.67 Aligned_cols=57 Identities=16% Similarity=-0.078 Sum_probs=30.1
Q ss_pred CCcEEEEEcCCcEEEEeCCCCCCCCCCCCCCCCceecceEcCccCCCcEEEEEeCCCceEEEEcCCCEEEe
Q 017198 271 KRKTFVLVDTGSVYGFGWMGFGSLGFPDRGVSDKVLRPRILDSLRAHHVSQISTGLYHTVVVTDRGRLFGF 341 (375)
Q Consensus 271 ~~~~~~l~~~g~vy~~G~n~~gqlg~~~~~~~~~~~~p~~~~~~~~~~i~~i~~G~~h~~~l~~~g~v~~w 341 (375)
+.+.++.+.+|.||++-...-..+.. ..+. .......-..-+.+.++.+.+|+||++
T Consensus 320 g~~l~~~~~~G~l~~~d~~tG~~~~~------------~~~~--~~~~~~sp~~~~~~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 320 GGYLVVGDFEGYLHWLSREDGSFVAR------------LKTD--GSGIASPPVVVGDGLLVQTRDGDLYAF 376 (377)
T ss_pred CCEEEEEeCCCEEEEEECCCCCEEEE------------EEcC--CCccccCCEEECCEEEEEeCCceEEEe
Confidence 45667778889999885332111110 0000 000111112223568888899999986
No 52
>TIGR01063 gyrA DNA gyrase, A subunit. This model describes the common type II DNA topoisomerase (DNA gyrase). Two apparently independently arising families, one in the Proteobacteria and one in Gram-positive lineages, are both designated toposisomerase IV.
Probab=60.91 E-value=2.2e+02 Score=29.78 Aligned_cols=267 Identities=13% Similarity=0.098 Sum_probs=124.4
Q ss_pred ecCCceEEEEEcCCcEEEeeCCCCCcccCCCCCCceecCEEccccCCcCeE--EEEccCCeEEEEEcCCCEEEEeCCCCC
Q 017198 56 SASENHAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCK--QVTAGLNFTGFLTIRGHVHTCGSNTHG 133 (375)
Q Consensus 56 ~~g~~~~~~lt~~g~vy~~G~n~~gqlg~~~~~~~~~~p~~i~~~~~~~i~--~v~~g~~~~~~lt~~g~v~~~G~n~~g 133 (375)
..-....++++++|.+-..-...+.....+.. . ...+..-++..+. ..+....+.+++|+.|++|..-....-
T Consensus 493 i~~e~~~vllS~~GyIKri~~~~~~~~~~~~~---g--~s~~klKe~D~l~~~~~~~t~d~LllfTs~Grv~~l~~~~IP 567 (800)
T TIGR01063 493 IARENVVVTLSHNGYVKRVPVSAYRLQKRGGK---G--VSGADMKDDDFIEQLLVASTHDYLLFFTNRGKVYWLKVYQIP 567 (800)
T ss_pred cCcceEEEEEcCCCEEEecchhhhhhhcccCc---C--ccccccCCCCeeEEEEEecCCCeEEEEeCCCcEEEEEhhhCc
Confidence 33456678899999875543332211000000 0 0001111222333 334466678899999999998433221
Q ss_pred cccCCCCCCCCcce-eecCCCCCCCEEEEEeC-----CCeEEEEECCCcEEEEeCCCCCccCCCCCCCccCceeeecccc
Q 017198 134 QLGHGDTLDRPTPK-SIAPLEEVGSVVQIAAG-----PSYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRR 207 (375)
Q Consensus 134 ~lg~~~~~~~~~p~-~~~~~~~~~~i~~i~~g-----~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~p~~i~~~~~ 207 (375)
..+. ...-.|. .+..+...++|+.+.+- ..+.+++|++|.+.-.-.+.+..... .......+..
T Consensus 568 ~~~r---~~~G~~i~~ll~L~~~E~Iv~~i~~~~~~~~~~lvliT~~GyiKRi~l~~~~~~~r-------~G~~aiklke 637 (800)
T TIGR01063 568 EASR---TAKGKPIVNLLPLQPDERITAILSVKEFDDGLYLFFATKNGVVKKTSLTEFSNIRS-------NGIIAIKLDD 637 (800)
T ss_pred CCCc---CCCCcCHHHhccCCCCCeEEEEEEeccCCCCCEEEEEeCCCEEEEEEhHHhhhhcc-------CCcccccCCC
Confidence 1111 1111111 11123344778777762 23678889999877665443321100 0111111111
Q ss_pred CCccEEEE--EcCCCeEEEEeCCCCEEEEeCCCCCCCCCCCCCCcccCeeccCCCCCceEEEEec--CCcEEEEEcCCcE
Q 017198 208 KGIHVVRV--SAGDEHVVALDSSGYVYTWGKGYCGALGHGDEIDKTLPEPLSSLKSHLAVQVCAR--KRKTFVLVDTGSV 283 (375)
Q Consensus 208 ~~~~i~~i--~~g~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~p~~i~~~~~~~i~~i~~g--~~~~~~l~~~g~v 283 (375)
.. .++.+ +....+.+++|++|+++..-...--..+....... .+....+..|+.+..- ..+.+++++.|.+
T Consensus 638 ~D-~lv~v~~~~~~d~lll~Ts~Gr~~r~~v~eIp~~gr~~~Gv~----~i~L~~~E~Vv~~~~v~~~~~ll~vT~~G~~ 712 (800)
T TIGR01063 638 GD-ELISVRLTSGDDEVMLGSKNGKAVRFPEEDVRPMGRAARGVR----GIKLKNEDFVVSLLVVSEESYLLIVTENGYG 712 (800)
T ss_pred CC-EEEEEEEeCCCCEEEEEECCCcEEEEEhhhcCCcCCCCCCee----cccCCCCCEEEEEEEeccccEEEEEecCCcE
Confidence 11 23332 22345688899999999886654333333222111 1222344556665543 2356777888866
Q ss_pred EEEeCCCCCCCCCCCCCCCCceecceEcCccC--CCcEEEEE--eCCCceEEEEcCCCEEEeeCCCCCCCC
Q 017198 284 YGFGWMGFGSLGFPDRGVSDKVLRPRILDSLR--AHHVSQIS--TGLYHTVVVTDRGRLFGFGDNERAQLG 350 (375)
Q Consensus 284 y~~G~n~~gqlg~~~~~~~~~~~~p~~~~~~~--~~~i~~i~--~G~~h~~~l~~~g~v~~wG~n~~gqlG 350 (375)
.-.--..+-....+. . .-..+ .+. +..++.+. ..+...++++++|.+..+-.++--.+|
T Consensus 713 Kr~~l~e~~~~~R~~---k----Gv~~i-kl~~~~d~lv~~~~v~~~~~v~liT~~G~~lrf~~~eI~~~g 775 (800)
T TIGR01063 713 KRTSIEEYRETSRGG---K----GVKSI-KITDRNGQVVGAIAVDDDDELMLITSAGKLIRTSVQDVSEQG 775 (800)
T ss_pred EEEEHHHccccCCCC---c----ceEEE-EccCCCCeEEEEEEecCCCeEEEEecCCeEEEeeHhhCCccc
Confidence 654322221111100 0 00111 111 12333332 234457888899988777555443333
No 53
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=60.70 E-value=1e+02 Score=25.95 Aligned_cols=107 Identities=13% Similarity=0.102 Sum_probs=52.7
Q ss_pred CEEEEecCC--ceEEEEEcCCcEEEeeCCCCCcccCCCCCCceecCEEccccCCcCeEEEEccC--CeEEEEEcCCCEEE
Q 017198 51 HVVQVSASE--NHAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGL--NFTGFLTIRGHVHT 126 (375)
Q Consensus 51 ~i~~i~~g~--~~~~~lt~~g~vy~~G~n~~gqlg~~~~~~~~~~p~~i~~~~~~~i~~v~~g~--~~~~~lt~~g~v~~ 126 (375)
+|..+.... ...++-..+|.++.|-..... ....+.. ....+..+..-. ...++...+|.|+.
T Consensus 11 ~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~------------~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~~~~i~i 77 (289)
T cd00200 11 GVTCVAFSPDGKLLATGSGDGTIKVWDLETGE------------LLRTLKG-HTGPVRDVAASADGTYLASGSSDKTIRL 77 (289)
T ss_pred CEEEEEEcCCCCEEEEeecCcEEEEEEeeCCC------------cEEEEec-CCcceeEEEECCCCCEEEEEcCCCeEEE
Confidence 455555443 455555568999998654321 0111111 112232333322 35556666899999
Q ss_pred EeCCCCCcccCCCCCCCCcceeecCCCCCCCEEEEEeCCC-eEEEEEC-CCcEEEEeCC
Q 017198 127 CGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGPS-YMLAVTG-NGVVYSFGSG 183 (375)
Q Consensus 127 ~G~n~~g~lg~~~~~~~~~p~~~~~~~~~~~i~~i~~g~~-~~~~lt~-~g~v~~~G~n 183 (375)
|-.... .....+... ...|..+..... ..++... +|.++.|-..
T Consensus 78 ~~~~~~-----------~~~~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~ 123 (289)
T cd00200 78 WDLETG-----------ECVRTLTGH--TSYVSSVAFSPDGRILSSSSRDKTIKVWDVE 123 (289)
T ss_pred EEcCcc-----------cceEEEecc--CCcEEEEEEcCCCCEEEEecCCCeEEEEECC
Confidence 854321 111111111 135666665543 3334444 8899998653
No 54
>PLN02153 epithiospecifier protein
Probab=60.60 E-value=1.3e+02 Score=27.32 Aligned_cols=17 Identities=18% Similarity=0.456 Sum_probs=12.7
Q ss_pred CeeEEEeCCcEEEEeCC
Q 017198 8 YHTLLISNSSVFSCGSS 24 (375)
Q Consensus 8 ~~~~~l~~g~l~~wG~n 24 (375)
.|+++.-+++||++|-.
T Consensus 25 ~h~~~~~~~~iyv~GG~ 41 (341)
T PLN02153 25 SHGIAVVGDKLYSFGGE 41 (341)
T ss_pred cceEEEECCEEEEECCc
Confidence 46665577899999964
No 55
>PRK13979 DNA topoisomerase IV subunit A; Provisional
Probab=58.59 E-value=2.6e+02 Score=29.89 Aligned_cols=132 Identities=7% Similarity=0.015 Sum_probs=73.2
Q ss_pred CCCEEEE--ecCCceEEEEEcCCcEEEeeCCCCCcccCCCCCCceecCEEcc-c-cCCcCeEEEEccC-----CeEEEEE
Q 017198 49 AAHVVQV--SASENHAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVE-A-LKGVPCKQVTAGL-----NFTGFLT 119 (375)
Q Consensus 49 ~~~i~~i--~~g~~~~~~lt~~g~vy~~G~n~~gqlg~~~~~~~~~~p~~i~-~-~~~~~i~~v~~g~-----~~~~~lt 119 (375)
...+.++ +...++.+++|+.|++|..-...--........ ......+. . +.+.+|+.+.+-. .+.+++|
T Consensus 551 ~D~i~~~~~~~T~d~LL~FTn~Gkvy~ikvy~IPe~~~~~~G--~~I~nll~~~~~~~EkIv~i~~~~ef~~~~~lv~~T 628 (957)
T PRK13979 551 GDFNKFLIQSNTKDTLLIFTDKGNMYQIKGINIPEFKWKEKG--ERLDEIIKGIDLESEKIIEAYSIEDFTPQKDFIFIT 628 (957)
T ss_pred CCceEEEEEEcCCCEEEEEECCCeEEEEEeeeCCCCCcCCCC--eEHHHhhhccCCCCCeEEEEEEeccCCCCCEEEEEE
Confidence 3344443 345677899999999998754442111111111 11111111 1 1355677666643 2468899
Q ss_pred cCCCEEEEeCCCCCcccCCCCCCCCcceeecCCCCCCCEEEEEeCC-----CeEEEEECCCcEEEEeCCCCCccCC
Q 017198 120 IRGHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGP-----SYMLAVTGNGVVYSFGSGSNFCLGH 190 (375)
Q Consensus 120 ~~g~v~~~G~n~~g~lg~~~~~~~~~p~~~~~~~~~~~i~~i~~g~-----~~~~~lt~~g~v~~~G~n~~gqlg~ 190 (375)
++|.+--.-.+.+... .. ....-.+.+.+.++.+.... .+.+++|++|...-|-.+.-..+|.
T Consensus 629 k~G~VKrt~L~ef~~~-------r~-~~~aikL~e~DeLV~v~~~~~~~~~~~Iil~Tk~G~airF~~~eVr~mGR 696 (957)
T PRK13979 629 DSGGIKKTSLDKFVTN-------YT-KLMALKLKKGEKLIKVKLVDRTREEKFIKIKTKKGLSFTVEEPELEPVDR 696 (957)
T ss_pred CCCeEEEEehhhcccc-------cc-ceEEEEcCCCCEEEEEEEcCCCCCCCEEEEEeCCCcEEEEEHHHCcccCC
Confidence 9999887744332211 11 12333344446677665543 3589999999998888766555554
No 56
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=57.87 E-value=36 Score=31.58 Aligned_cols=57 Identities=12% Similarity=0.168 Sum_probs=42.1
Q ss_pred eeecCCe---eEEE-eCCcEEEEeCCCCCccCCCCCCCeeeeeeeecCCCCCCEEEEecCCceEEEEEcCCcEEEee
Q 017198 3 ITTGRYH---TLLI-SNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSASENHAAFVLQSGQVFTCG 75 (375)
Q Consensus 3 i~~G~~~---~~~l-~~g~l~~wG~n~~g~Lg~~~~~~~~~~~~~~~~~~~~~i~~i~~g~~~~~~lt~~g~vy~~G 75 (375)
+.+|..+ .+++ ++|++..|-.+ ..+.++. ....+.+|..-+...++++..|++|.+.
T Consensus 165 ~~~~~~~~~~vl~i~~~g~l~~w~~~---------------~Wt~l~~-~~~~~~DIi~~kGkfYAvD~~G~l~~i~ 225 (373)
T PLN03215 165 VKEGDNHRDGVLGIGRDGKINYWDGN---------------VLKALKQ-MGYHFSDIIVHKGQTYALDSIGIVYWIN 225 (373)
T ss_pred eecCCCcceEEEEEeecCcEeeecCC---------------eeeEccC-CCceeeEEEEECCEEEEEcCCCeEEEEe
Confidence 3556554 5555 99999999643 3555542 4448999999899999999999999886
No 57
>PF06739 SBBP: Beta-propeller repeat; InterPro: IPR010620 This family is related to IPR001680 from INTERPRO and is likely to also form a beta-propeller. SBBP stands for Seven Bladed Beta Propeller.
Probab=56.96 E-value=14 Score=21.48 Aligned_cols=18 Identities=33% Similarity=0.523 Sum_probs=15.1
Q ss_pred CeEEEEeCCCCEEEEeCC
Q 017198 220 EHVVALDSSGYVYTWGKG 237 (375)
Q Consensus 220 ~~~~~lt~~g~v~~~G~n 237 (375)
-+.++++.+|++|+.|..
T Consensus 15 ~~~IavD~~GNiYv~G~T 32 (38)
T PF06739_consen 15 GNGIAVDSNGNIYVTGYT 32 (38)
T ss_pred EEEEEECCCCCEEEEEee
Confidence 357899999999999963
No 58
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=56.87 E-value=1.3e+02 Score=26.11 Aligned_cols=38 Identities=8% Similarity=-0.061 Sum_probs=21.8
Q ss_pred eecCEEccccCCcCeE-EEEccCCeEEEE-EcCCCEEEEeC
Q 017198 91 IFRPRLVEALKGVPCK-QVTAGLNFTGFL-TIRGHVHTCGS 129 (375)
Q Consensus 91 ~~~p~~i~~~~~~~i~-~v~~g~~~~~~l-t~~g~v~~~G~ 129 (375)
..+|+.+..-.+. |+ -+-|-..++++- +.++.|-.|-.
T Consensus 133 ~App~E~~ghtg~-Ir~v~wc~eD~~iLSSadd~tVRLWD~ 172 (334)
T KOG0278|consen 133 KAPPKEISGHTGG-IRTVLWCHEDKCILSSADDKTVRLWDH 172 (334)
T ss_pred CCCchhhcCCCCc-ceeEEEeccCceEEeeccCCceEEEEe
Confidence 4556655544332 33 344555555554 77888998854
No 59
>PF12341 DUF3639: Protein of unknown function (DUF3639) ; InterPro: IPR022100 This domain family is found in eukaryotes, and is approximately 30 amino acids in length. The family is found in association with PF00400 from PFAM. There are two completely conserved residues (E and R) that may be functionally important.
Probab=56.22 E-value=30 Score=18.48 Aligned_cols=24 Identities=29% Similarity=0.394 Sum_probs=20.5
Q ss_pred CCEEEEEeCCCeEEEEECCCcEEE
Q 017198 156 GSVVQIAAGPSYMLAVTGNGVVYS 179 (375)
Q Consensus 156 ~~i~~i~~g~~~~~~lt~~g~v~~ 179 (375)
+.|..|++|..+..+.|+.+-|-.
T Consensus 2 E~i~aia~g~~~vavaTS~~~lRi 25 (27)
T PF12341_consen 2 EEIEAIAAGDSWVAVATSAGYLRI 25 (27)
T ss_pred ceEEEEEccCCEEEEEeCCCeEEe
Confidence 679999999999999998886544
No 60
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=53.49 E-value=3.3e+02 Score=29.62 Aligned_cols=189 Identities=14% Similarity=0.045 Sum_probs=0.0
Q ss_pred CEEEEecCCce-EEEEE--cCCcEEEeeCCCCCcccCCCCCCceecCEEccccCCcCeEEEEccCCeEEEEEcCCCEEEE
Q 017198 51 HVVQVSASENH-AAFVL--QSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGLNFTGFLTIRGHVHTC 127 (375)
Q Consensus 51 ~i~~i~~g~~~-~~~lt--~~g~vy~~G~n~~gqlg~~~~~~~~~~p~~i~~~~~~~i~~v~~g~~~~~~lt~~g~v~~~ 127 (375)
.+.+++....| +++++ +||.|-+|-.-. -.+.........+....-.....+-..-+....++-++||.|-+.
T Consensus 1050 ~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k----~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~DG~v~~~ 1125 (1431)
T KOG1240|consen 1050 AVIKLAVSSEHTSLFVSGSDDGTVKVWNLRK----LEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVSTKDGSVRVL 1125 (1431)
T ss_pred cccceeecCCCCceEEEecCCceEEEeeehh----hhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEEcCCCeEEEE
Q ss_pred eCCCCCcccCCCCCCCCcceeecCCCCCCCEEEEEeCCCeE-----EEEECCCcEEEEeCCCCCccCCCCCCCccCceee
Q 017198 128 GSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGPSYM-----LAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAI 202 (375)
Q Consensus 128 G~n~~g~lg~~~~~~~~~p~~~~~~~~~~~i~~i~~g~~~~-----~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~p~~i 202 (375)
.-+.+ ...........++.+.....++++.+-..+. ++.|..+.+..|+... ......+
T Consensus 1126 ~id~~-----~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~-----------~~~~w~l 1189 (1431)
T KOG1240|consen 1126 RIDHY-----NVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRM-----------RHDAWRL 1189 (1431)
T ss_pred Ecccc-----ccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchh-----------hhhHHhh
Q ss_pred eccccCCccEEEEEcCCCeEEEEeCCCCEEEEeCCCCCCCCCCCCCCcccCeeccCCCCCceEEEEe
Q 017198 203 QTFRRKGIHVVRVSAGDEHVVALDSSGYVYTWGKGYCGALGHGDEIDKTLPEPLSSLKSHLAVQVCA 269 (375)
Q Consensus 203 ~~~~~~~~~i~~i~~g~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~p~~i~~~~~~~i~~i~~ 269 (375)
+. ...+|.-.+++++..++..+-|. +.|+|-.-+..-...-.....+...+|.++.+
T Consensus 1190 k~---------~~~hG~vTSi~idp~~~WlviGt-s~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~ 1246 (1431)
T KOG1240|consen 1190 KN---------QLRHGLVTSIVIDPWCNWLVIGT-SRGQLVLWDLRFRVPILSWEHPARAPIRHVWL 1246 (1431)
T ss_pred hc---------CccccceeEEEecCCceEEEEec-CCceEEEEEeecCceeecccCcccCCcceEEe
No 61
>PHA02790 Kelch-like protein; Provisional
Probab=53.28 E-value=96 Score=30.01 Aligned_cols=17 Identities=18% Similarity=0.313 Sum_probs=11.8
Q ss_pred EEEEEcCCcEEEeeCCC
Q 017198 62 AAFVLQSGQVFTCGDNS 78 (375)
Q Consensus 62 ~~~lt~~g~vy~~G~n~ 78 (375)
..+..-+|+||+.|...
T Consensus 356 ~~~~~~~g~IYviGG~~ 372 (480)
T PHA02790 356 PAVASINNVIYVIGGHS 372 (480)
T ss_pred cEEEEECCEEEEecCcC
Confidence 34445579999998654
No 62
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=51.07 E-value=91 Score=31.00 Aligned_cols=147 Identities=12% Similarity=0.209 Sum_probs=66.7
Q ss_pred eeEEEeCCcEEEEeCCCCCccCCCCCCCeeeeeeeecCCCCC--CEEEEecCCceEEEEEcCCcEEEeeCCCCCcccCCC
Q 017198 9 HTLLISNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAA--HVVQVSASENHAAFVLQSGQVFTCGDNSSFCCGHRD 86 (375)
Q Consensus 9 ~~~~l~~g~l~~wG~n~~g~Lg~~~~~~~~~~~~~~~~~~~~--~i~~i~~g~~~~~~lt~~g~vy~~G~n~~gqlg~~~ 86 (375)
|.++.-+|.||+-|--+ |...... -+...-..+. .+..+.-......+..-+|+||+.|-.+...--. .
T Consensus 374 ~~v~~l~g~iYavGG~d----g~~~l~s----vE~YDp~~~~W~~va~m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l-~ 444 (571)
T KOG4441|consen 374 FGVAVLDGKLYAVGGFD----GEKSLNS----VECYDPVTNKWTPVAPMLTRRSGHGVAVLGGKLYIIGGGDGSSNCL-N 444 (571)
T ss_pred ceeEEECCEEEEEeccc----ccccccc----EEEecCCCCcccccCCCCcceeeeEEEEECCEEEEEcCcCCCcccc-c
Confidence 33333899999999544 2221111 1111111111 1222333455555666689999998765322100 0
Q ss_pred CCCceecC-----EEccccCCcCeEEEEccCCeEEEEEcCCCEEEEeCCCCCcccCCCCCCCCcceeecCCCCCCCEEE-
Q 017198 87 TNRPIFRP-----RLVEALKGVPCKQVTAGLNFTGFLTIRGHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQ- 160 (375)
Q Consensus 87 ~~~~~~~p-----~~i~~~~~~~i~~v~~g~~~~~~lt~~g~v~~~G~n~~g~lg~~~~~~~~~p~~~~~~~~~~~i~~- 160 (375)
+ ...+.| +.+.. +..-+.+.-+.+-+++||+.|..+. +-... ......|.. .+.+.
T Consensus 445 s-ve~YDP~t~~W~~~~~--------M~~~R~~~g~a~~~~~iYvvGG~~~-~~~~~-~VE~ydp~~-------~~W~~v 506 (571)
T KOG4441|consen 445 S-VECYDPETNTWTLIAP--------MNTRRSGFGVAVLNGKIYVVGGFDG-TSALS-SVERYDPET-------NQWTMV 506 (571)
T ss_pred e-EEEEcCCCCceeecCC--------cccccccceEEEECCEEEEECCccC-CCccc-eEEEEcCCC-------CceeEc
Confidence 0 001111 11111 1112222235555899999986543 11000 001111111 22333
Q ss_pred --EEeCCCeEEEEECCCcEEEEeC
Q 017198 161 --IAAGPSYMLAVTGNGVVYSFGS 182 (375)
Q Consensus 161 --i~~g~~~~~~lt~~g~v~~~G~ 182 (375)
+.....+.-+..-++++|+-|.
T Consensus 507 ~~m~~~rs~~g~~~~~~~ly~vGG 530 (571)
T KOG4441|consen 507 APMTSPRSAVGVVVLGGKLYAVGG 530 (571)
T ss_pred ccCccccccccEEEECCEEEEEec
Confidence 3344555555666889999986
No 63
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=50.54 E-value=1.6e+02 Score=26.52 Aligned_cols=18 Identities=6% Similarity=0.171 Sum_probs=13.4
Q ss_pred CeeEEEeCCcEEEEeCCC
Q 017198 8 YHTLLISNSSVFSCGSSL 25 (375)
Q Consensus 8 ~~~~~l~~g~l~~wG~n~ 25 (375)
.|++++.+++||++|-..
T Consensus 116 ~~~~~~~~~~iYv~GG~~ 133 (323)
T TIGR03548 116 NGSACYKDGTLYVGGGNR 133 (323)
T ss_pred CceEEEECCEEEEEeCcC
Confidence 455555889999999753
No 64
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=49.74 E-value=1.3e+02 Score=30.39 Aligned_cols=29 Identities=28% Similarity=0.479 Sum_probs=21.1
Q ss_pred ccCCCcEEEEEeCCC----ceEEEEcCCCEEEe
Q 017198 313 SLRAHHVSQISTGLY----HTVVVTDRGRLFGF 341 (375)
Q Consensus 313 ~~~~~~i~~i~~G~~----h~~~l~~~g~v~~w 341 (375)
.+.+....+|+||-. .+++|+..|-+--+
T Consensus 214 ~lr~n~f~avaCg~gicAestfait~qGhLvEF 246 (1080)
T KOG1408|consen 214 NLRFNEFLAVACGVGICAESTFAITAQGHLVEF 246 (1080)
T ss_pred ccccchhhhhhhcCcccccceEEEecccceeee
Confidence 345667888999976 89999986654433
No 65
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=48.22 E-value=3.7e+02 Score=28.68 Aligned_cols=27 Identities=19% Similarity=0.144 Sum_probs=22.3
Q ss_pred cCeEEEEccCCe--EEEEEcCCCEEEEeC
Q 017198 103 VPCKQVTAGLNF--TGFLTIRGHVHTCGS 129 (375)
Q Consensus 103 ~~i~~v~~g~~~--~~~lt~~g~v~~~G~ 129 (375)
..|.+|+....+ .++++.+|.+..|=.
T Consensus 427 ~~v~~vaf~~~~~~~avl~~d~~l~~~~~ 455 (928)
T PF04762_consen 427 SPVNDVAFSPSNSRFAVLTSDGSLSIYEW 455 (928)
T ss_pred CCcEEEEEeCCCCeEEEEECCCCEEEEEe
Confidence 468899988888 799999999887753
No 66
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=48.15 E-value=2.4e+02 Score=26.49 Aligned_cols=26 Identities=12% Similarity=0.163 Sum_probs=19.2
Q ss_pred CEEEEEeCCCeEEEE--ECCCcEEEEeC
Q 017198 157 SVVQIAAGPSYMLAV--TGNGVVYSFGS 182 (375)
Q Consensus 157 ~i~~i~~g~~~~~~l--t~~g~v~~~G~ 182 (375)
-|.+...|.+-.++. .+|++||.|-.
T Consensus 442 iIrSCFgg~~~~fiaSGSED~kvyIWhr 469 (519)
T KOG0293|consen 442 IIRSCFGGGNDKFIASGSEDSKVYIWHR 469 (519)
T ss_pred EEEeccCCCCcceEEecCCCceEEEEEc
Confidence 467777777756665 58899999954
No 67
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=46.72 E-value=2.3e+02 Score=25.81 Aligned_cols=16 Identities=13% Similarity=0.181 Sum_probs=12.2
Q ss_pred eeEEE-eCCcEEEEeCC
Q 017198 9 HTLLI-SNSSVFSCGSS 24 (375)
Q Consensus 9 ~~~~l-~~g~l~~wG~n 24 (375)
|+++. .+++||+.|--
T Consensus 111 ~~~~~~~~g~IYviGG~ 127 (346)
T TIGR03547 111 ASGFSLHNGQAYFTGGV 127 (346)
T ss_pred eeEEEEeCCEEEEEcCc
Confidence 55554 89999999964
No 68
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=46.14 E-value=4e+02 Score=28.45 Aligned_cols=27 Identities=19% Similarity=0.103 Sum_probs=22.4
Q ss_pred CCEEEEecCCce--EEEEEcCCcEEEeeC
Q 017198 50 AHVVQVSASENH--AAFVLQSGQVFTCGD 76 (375)
Q Consensus 50 ~~i~~i~~g~~~--~~~lt~~g~vy~~G~ 76 (375)
..|.+|+..... .++++.||+++.|-.
T Consensus 427 ~~v~~vaf~~~~~~~avl~~d~~l~~~~~ 455 (928)
T PF04762_consen 427 SPVNDVAFSPSNSRFAVLTSDGSLSIYEW 455 (928)
T ss_pred CCcEEEEEeCCCCeEEEEECCCCEEEEEe
Confidence 489999988777 899999998877753
No 69
>PRK05560 DNA gyrase subunit A; Validated
Probab=45.64 E-value=3.8e+02 Score=28.06 Aligned_cols=265 Identities=12% Similarity=0.081 Sum_probs=125.5
Q ss_pred EecCCceEEEEEcCCcEEEeeCCCCCcccCCCCCCceecCEEccccCCcCeE--EEEccCCeEEEEEcCCCEEEEeCCCC
Q 017198 55 VSASENHAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCK--QVTAGLNFTGFLTIRGHVHTCGSNTH 132 (375)
Q Consensus 55 i~~g~~~~~~lt~~g~vy~~G~n~~gqlg~~~~~~~~~~p~~i~~~~~~~i~--~v~~g~~~~~~lt~~g~v~~~G~n~~ 132 (375)
+..-....++|+++|.+-..-..++..-.... .....+..-++..+. ..+......+++|+.|++|..-....
T Consensus 494 lI~~E~v~vllS~~GyIKri~~~~~~~~~~~~-----~g~~~~klKe~D~l~~~~~~~t~d~LllfTs~Grv~~l~v~~i 568 (805)
T PRK05560 494 LIPEEDVVVTLTHGGYIKRTPLDEYRAQRRGG-----KGVSGAKTKEDDFVEHLFVASTHDTLLFFTNRGRVYRLKVYEI 568 (805)
T ss_pred ccCCCCEEEEEeCCCEEEEcchhhhhhhcccC-----CCccccccCCCCeeEEEEEecCCCeEEEEecCCeEEEEEhhhC
Confidence 33446778899999988765433321000000 000111111222333 33446667889999999999865422
Q ss_pred CcccCCCCCCCCcce-eecCCCCCCCEEEEEeCC-----CeEEEEECCCcEEEEeCCCCCccCCCCCCCccCceeeeccc
Q 017198 133 GQLGHGDTLDRPTPK-SIAPLEEVGSVVQIAAGP-----SYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFR 206 (375)
Q Consensus 133 g~lg~~~~~~~~~p~-~~~~~~~~~~i~~i~~g~-----~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~p~~i~~~~ 206 (375)
-..+ ....-.|. .+-.+...++|+.+.+-. ...+++|++|.+.-.-...+..... .......+.
T Consensus 569 P~~~---~~~~G~~i~~ll~L~~~E~Iv~~i~~~~~~~e~~lvlvTk~GyiKRi~l~~~~~~~r-------~G~~~ikLk 638 (805)
T PRK05560 569 PEAS---RTARGRPIVNLLPLEPGEKITAILPVREFDDDKYLFFATKNGTVKKTSLSEFSNIRS-------NGIIAINLD 638 (805)
T ss_pred cCCC---cCCCCeEHHHhcCCCCCceEEEEEeccCCCCCCEEEEEeCCCEEEEEEhHHhhhccc-------CCceeeccC
Confidence 2111 11111111 011233447788887754 4578889999777664433211100 011111111
Q ss_pred cCCccEEEE--EcCCCeEEEEeCCCCEEEEeCCCCCCCCCCCCCCcccCee-ccCCCCCceEEEEecC---CcEEEEEcC
Q 017198 207 RKGIHVVRV--SAGDEHVVALDSSGYVYTWGKGYCGALGHGDEIDKTLPEP-LSSLKSHLAVQVCARK---RKTFVLVDT 280 (375)
Q Consensus 207 ~~~~~i~~i--~~g~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~p~~-i~~~~~~~i~~i~~g~---~~~~~l~~~ 280 (375)
... .++.+ .....+.+++|++|+++.+-...--..+.... ..+ +....+..|+.+.... .+.+++++.
T Consensus 639 e~D-~lv~v~~~~~~d~lll~T~~Gr~~r~~~~eIp~~gr~~~-----Gv~~i~L~~~E~Vv~~~~v~~~~~~il~vTk~ 712 (805)
T PRK05560 639 EGD-ELIGVRLTDGDDDILLATKNGKAIRFPESDVRPMGRTAR-----GVRGIKLREGDEVVSMDVVREDSQEILTVTEN 712 (805)
T ss_pred CCC-EEEEEEEeCCCCEEEEEECCCcEEEEEhhhcCccCcccC-----CcccccCCCCCEEEEEEEEcCCCcEEEEEEeC
Confidence 111 23332 22345688899999999886543322222111 111 1222345566655433 256777888
Q ss_pred CcEEEEeCCCCCCCCCCCCCCCCceecceEcCccC-CCcEEEEE--eCCCceEEEEcCCCEEEeeCCCCC
Q 017198 281 GSVYGFGWMGFGSLGFPDRGVSDKVLRPRILDSLR-AHHVSQIS--TGLYHTVVVTDRGRLFGFGDNERA 347 (375)
Q Consensus 281 g~vy~~G~n~~gqlg~~~~~~~~~~~~p~~~~~~~-~~~i~~i~--~G~~h~~~l~~~g~v~~wG~n~~g 347 (375)
|.+-..-...+-....+. ..-..++.-. +..++.+. .+....++++.+|++..+-.++--
T Consensus 713 G~iKr~~l~e~~~~~R~~-------kG~~~lkl~~~~d~lv~v~~v~~~~~v~i~T~~G~~lrf~~~eI~ 775 (805)
T PRK05560 713 GYGKRTPVSEYRLQGRGG-------KGVITIKITEKNGKLVGALPVDDDDEIMLITDSGKLIRTRVSEIS 775 (805)
T ss_pred CeEEEEEHHHhhccCCCC-------CcEEeeeccCCCCeEEEEEEecCCCeEEEEecCCeEEEEEHHHCC
Confidence 866654322221111100 0001111111 12343332 344568888999988777555433
No 70
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=45.58 E-value=2.2e+02 Score=25.31 Aligned_cols=141 Identities=15% Similarity=0.126 Sum_probs=71.1
Q ss_pred CCeeEEE-eCCcEEEEeCCCCCccCCCCCCCeeeeeeeecCCCCCCEEEEecCCceEEEEEcCCcEEEeeCC-CCCcccC
Q 017198 7 RYHTLLI-SNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSASENHAAFVLQSGQVFTCGDN-SSFCCGH 84 (375)
Q Consensus 7 ~~~~~~l-~~g~l~~wG~n~~g~Lg~~~~~~~~~~~~~~~~~~~~~i~~i~~g~~~~~~lt~~g~vy~~G~n-~~gqlg~ 84 (375)
.-|-++- .||.||.-+... +.+|.-+... -+...+.+.... .-|.+++-.||..|++-.. ..+.++.
T Consensus 63 ap~dvapapdG~VWft~qg~-gaiGhLdP~t--Gev~~ypLg~Ga--------~Phgiv~gpdg~~Witd~~~aI~R~dp 131 (353)
T COG4257 63 APFDVAPAPDGAVWFTAQGT-GAIGHLDPAT--GEVETYPLGSGA--------SPHGIVVGPDGSAWITDTGLAIGRLDP 131 (353)
T ss_pred CccccccCCCCceEEecCcc-ccceecCCCC--CceEEEecCCCC--------CCceEEECCCCCeeEecCcceeEEecC
Confidence 3455666 888899877653 3444422222 222222232222 3455666667777766322 2222221
Q ss_pred CCCCCceecCEEccccCCcCeEEEEccCCeEEEEEcCCCEEEEeCC-CCCcccCCCCCCCCcceeecCCCCCCCEEEEEe
Q 017198 85 RDTNRPIFRPRLVEALKGVPCKQVTAGLNFTGFLTIRGHVHTCGSN-THGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAA 163 (375)
Q Consensus 85 ~~~~~~~~~p~~i~~~~~~~i~~v~~g~~~~~~lt~~g~v~~~G~n-~~g~lg~~~~~~~~~p~~~~~~~~~~~i~~i~~ 163 (375)
... +....|.+ .+..-+.-.+.+++.+|+||..|.+ .+|.|--.....+. .+.. .-
T Consensus 132 kt~-evt~f~lp---------~~~a~~nlet~vfD~~G~lWFt~q~G~yGrLdPa~~~i~v----fpaP---------qG 188 (353)
T COG4257 132 KTL-EVTRFPLP---------LEHADANLETAVFDPWGNLWFTGQIGAYGRLDPARNVISV----FPAP---------QG 188 (353)
T ss_pred ccc-ceEEeecc---------cccCCCcccceeeCCCccEEEeeccccceecCcccCceee----eccC---------CC
Confidence 111 11111111 2344556678999999999999874 33433211111000 0111 12
Q ss_pred CCCeEEEEECCCcEEEEe
Q 017198 164 GPSYMLAVTGNGVVYSFG 181 (375)
Q Consensus 164 g~~~~~~lt~~g~v~~~G 181 (375)
+.-+.++.|-+|+||.--
T Consensus 189 ~gpyGi~atpdGsvwyas 206 (353)
T COG4257 189 GGPYGICATPDGSVWYAS 206 (353)
T ss_pred CCCcceEECCCCcEEEEe
Confidence 456788999999999863
No 71
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=44.38 E-value=2.2e+02 Score=24.89 Aligned_cols=81 Identities=15% Similarity=0.249 Sum_probs=40.4
Q ss_pred cceeecCCCCCCCEEEE-EeCCCeEEEE-ECCCcEEEEeCCCCCccCCCCCCCccCceeeeccccCCccEEEEEcC-CCe
Q 017198 145 TPKSIAPLEEVGSVVQI-AAGPSYMLAV-TGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAG-DEH 221 (375)
Q Consensus 145 ~p~~~~~~~~~~~i~~i-~~g~~~~~~l-t~~g~v~~~G~n~~gqlg~~~~~~~~~p~~i~~~~~~~~~i~~i~~g-~~~ 221 (375)
.|..+..-. ..|+.+ -|..+++++- ++++.|..|-...- ..+..+.. +.++.+.... ..+
T Consensus 135 pp~E~~ght--g~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTg--------------t~v~sL~~-~s~VtSlEvs~dG~ 197 (334)
T KOG0278|consen 135 PPKEISGHT--GGIRTVLWCHEDKCILSSADDKTVRLWDHRTG--------------TEVQSLEF-NSPVTSLEVSQDGR 197 (334)
T ss_pred CchhhcCCC--CcceeEEEeccCceEEeeccCCceEEEEeccC--------------cEEEEEec-CCCCcceeeccCCC
Confidence 344444333 345544 3666666555 78899999965221 11111111 1133333322 234
Q ss_pred EEEEeCCCCEEEEeCCCCCCC
Q 017198 222 VVALDSSGYVYTWGKGYCGAL 242 (375)
Q Consensus 222 ~~~lt~~g~v~~~G~n~~gql 242 (375)
.+.+..-+.|-.|-.++++.|
T Consensus 198 ilTia~gssV~Fwdaksf~~l 218 (334)
T KOG0278|consen 198 ILTIAYGSSVKFWDAKSFGLL 218 (334)
T ss_pred EEEEecCceeEEeccccccce
Confidence 444444556788877776644
No 72
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=44.29 E-value=24 Score=21.54 Aligned_cols=17 Identities=12% Similarity=0.380 Sum_probs=13.4
Q ss_pred CeeEEEeCCcEEEEeCC
Q 017198 8 YHTLLISNSSVFSCGSS 24 (375)
Q Consensus 8 ~~~~~l~~g~l~~wG~n 24 (375)
.|+++.-+++||++|--
T Consensus 4 ~hs~~~~~~kiyv~GG~ 20 (49)
T PF07646_consen 4 GHSAVVLDGKIYVFGGY 20 (49)
T ss_pred ceEEEEECCEEEEECCc
Confidence 45666699999999965
No 73
>PHA02790 Kelch-like protein; Provisional
Probab=44.26 E-value=3.1e+02 Score=26.58 Aligned_cols=15 Identities=13% Similarity=0.259 Sum_probs=11.2
Q ss_pred EEEEcCCCEEEEeCC
Q 017198 116 GFLTIRGHVHTCGSN 130 (375)
Q Consensus 116 ~~lt~~g~v~~~G~n 130 (375)
.+..-+|+||+.|..
T Consensus 357 ~~~~~~g~IYviGG~ 371 (480)
T PHA02790 357 AVASINNVIYVIGGH 371 (480)
T ss_pred EEEEECCEEEEecCc
Confidence 444568999999864
No 74
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=44.10 E-value=62 Score=29.20 Aligned_cols=57 Identities=18% Similarity=0.203 Sum_probs=36.8
Q ss_pred EEEcCCcEEEEeCCCCCCCCCCCCCCCCceecceEcCccCCCcEEEEEeCCCceE--EEEcCCCEEEeeC
Q 017198 276 VLVDTGSVYGFGWMGFGSLGFPDRGVSDKVLRPRILDSLRAHHVSQISTGLYHTV--VVTDRGRLFGFGD 343 (375)
Q Consensus 276 ~l~~~g~vy~~G~n~~gqlg~~~~~~~~~~~~p~~~~~~~~~~i~~i~~G~~h~~--~l~~~g~v~~wG~ 343 (375)
+..+.|+||+|--.+. +....++......+..|.|.+....-++ ++.+++.||.|-+
T Consensus 324 ~gnq~g~v~vwdL~~~-----------ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdr 382 (385)
T KOG1034|consen 324 LGNQSGKVYVWDLDNN-----------EPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDR 382 (385)
T ss_pred hccCCCcEEEEECCCC-----------CCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEe
Confidence 4457899999984321 1113344455555678888887755544 5568899999954
No 75
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=43.96 E-value=3.1e+02 Score=26.55 Aligned_cols=57 Identities=14% Similarity=0.187 Sum_probs=28.3
Q ss_pred EEccCCeEEEEEcCCCEEEEeCCCCCcccCCCCCCCCcceeecCCCCCCCEEEEEeCCCe
Q 017198 108 VTAGLNFTGFLTIRGHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGPSY 167 (375)
Q Consensus 108 v~~g~~~~~~lt~~g~v~~~G~n~~g~lg~~~~~~~~~p~~~~~~~~~~~i~~i~~g~~~ 167 (375)
+--|.-+++.+..+|.|.+ |..+.--.--........+++++... ..|+-|+-|..-
T Consensus 285 aH~ggv~~L~~lr~GtllS-GgKDRki~~Wd~~y~k~r~~elPe~~--G~iRtv~e~~~d 341 (626)
T KOG2106|consen 285 AHDGGVFSLCMLRDGTLLS-GGKDRKIILWDDNYRKLRETELPEQF--GPIRTVAEGKGD 341 (626)
T ss_pred ecCCceEEEEEecCccEee-cCccceEEeccccccccccccCchhc--CCeeEEecCCCc
Confidence 4456677777778888777 43222111111112223344444322 566767666544
No 76
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=41.38 E-value=2.9e+02 Score=25.53 Aligned_cols=30 Identities=10% Similarity=0.224 Sum_probs=21.5
Q ss_pred CCcEEEEEeC-CCceEEEEcCCCEEEeeCCC
Q 017198 316 AHHVSQISTG-LYHTVVVTDRGRLFGFGDNE 345 (375)
Q Consensus 316 ~~~i~~i~~G-~~h~~~l~~~g~v~~wG~n~ 345 (375)
...+..|..| .-+.++++.||+.+.+-.|.
T Consensus 289 ~kvi~~i~vG~~~~~iavS~Dgkp~lyvtn~ 319 (352)
T TIGR02658 289 GKRLRKIELGHEIDSINVSQDAKPLLYALST 319 (352)
T ss_pred CeEEEEEeCCCceeeEEECCCCCeEEEEeCC
Confidence 4466677766 46689999999966666553
No 77
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=40.67 E-value=1.2e+02 Score=31.94 Aligned_cols=33 Identities=15% Similarity=0.338 Sum_probs=21.4
Q ss_pred cEEEEE-cCCCeEEEEe--CCCCEEEEeCCCCCCCC
Q 017198 211 HVVRVS-AGDEHVVALD--SSGYVYTWGKGYCGALG 243 (375)
Q Consensus 211 ~i~~i~-~g~~~~~~lt--~~g~v~~~G~n~~gqlg 243 (375)
-|..++ |..+.-++|+ +|+++++|.-|.-..|+
T Consensus 255 GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~ 290 (1049)
T KOG0307|consen 255 GILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLG 290 (1049)
T ss_pred ceeeeccCCCCchhhhcccCCCCeeEecCCCceEee
Confidence 455553 4444345554 78999999988755554
No 78
>PF00167 FGF: Fibroblast growth factor; InterPro: IPR002348 The interleukin-1 (IL1) and heparin-binding growth factor (HBGF) families share low sequence similarity (about 25% []) but have very similar structures. Coupled with the Kunitz-type soybean trypsin inhibitors (STI), they form a structural superfamily. Despite their structural correspondence, however, they show no sequence similarity to the STI family. The crystal structures of interleukin-1 beta and HBGF1 have been solved, showing both families to have the same 12-stranded beta-sheet structure []; the beta-sheets are arranged in 3 similar lobes around a central axis, 6 strands forming an anti-parallel beta-barrel [, ]. The beta-sheets are generally well preserved and the crystal structures superimpose in these areas. The intervening loops are less well conserved - the loop between beta-strands 6 and 7 is slightly longer in interleukin-1 beta.; GO: 0008083 growth factor activity; PDB: 1AFC_F 1BAR_A 2P39_A 1EV2_D 2BFH_A 4FGF_A 1BAS_A 1BFG_A 1FQ9_B 1CVS_A ....
Probab=40.26 E-value=1.6e+02 Score=22.19 Aligned_cols=65 Identities=15% Similarity=0.071 Sum_probs=40.6
Q ss_pred EEEEecCCceEEEEEcCCcEEEeeCCCCCcccCCCCCCceecCEEccccCCcCeEEEEccCCeEEEEEcCCCEEEE
Q 017198 52 VVQVSASENHAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGLNFTGFLTIRGHVHTC 127 (375)
Q Consensus 52 i~~i~~g~~~~~~lt~~g~vy~~G~n~~gqlg~~~~~~~~~~p~~i~~~~~~~i~~v~~g~~~~~~lt~~g~v~~~ 127 (375)
.+++.|-..+.+-+..||.|-.-+... ..........+.. + .|.--+.-....++++++|+||.-
T Consensus 2 ~~~Ly~~~~~~L~i~~~g~V~gt~~~~--------~~~s~~~i~~~~~--g-~V~i~~~~s~~YLcmn~~G~ly~~ 66 (122)
T PF00167_consen 2 HVQLYCRTGYFLQINPNGTVDGTGDDN--------SPYSVFEIHSVGF--G-VVRIRGVKSCRYLCMNKCGRLYGS 66 (122)
T ss_dssp EEEEEETTSEEEEEETTSBEEEESSTT--------STTGEEEEEEEET--T-EEEEEETTTTEEEEEBTTSBEEEE
T ss_pred CEEEEECCCeEEEECCCCeEeCCCCcC--------cceeEEEEEeccc--e-EEEEEEecceEEEEECCCCeEccc
Confidence 577888778899999999998775542 1111222222221 2 333333444667899999999985
No 79
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=39.70 E-value=29 Score=21.04 Aligned_cols=17 Identities=18% Similarity=0.417 Sum_probs=10.7
Q ss_pred CeeEEE-eCCcEEEEeCC
Q 017198 8 YHTLLI-SNSSVFSCGSS 24 (375)
Q Consensus 8 ~~~~~l-~~g~l~~wG~n 24 (375)
.|+++. .+++||++|--
T Consensus 4 ~h~~~~~~~~~i~v~GG~ 21 (49)
T PF13418_consen 4 GHSAVSIGDNSIYVFGGR 21 (49)
T ss_dssp S-EEEEE-TTEEEEE--E
T ss_pred eEEEEEEeCCeEEEECCC
Confidence 577777 78999999943
No 80
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=39.45 E-value=3.2e+02 Score=25.37 Aligned_cols=18 Identities=22% Similarity=0.211 Sum_probs=12.6
Q ss_pred CeEEEEECCCcEEEEeCC
Q 017198 166 SYMLAVTGNGVVYSFGSG 183 (375)
Q Consensus 166 ~~~~~lt~~g~v~~~G~n 183 (375)
.|+.+...+++||++|-.
T Consensus 131 ~~~~~~~~~~~IYv~GG~ 148 (376)
T PRK14131 131 GHVAVSLHNGKAYITGGV 148 (376)
T ss_pred ceEEEEeeCCEEEEECCC
Confidence 355554468999999874
No 81
>PF13854 Kelch_5: Kelch motif
Probab=38.51 E-value=36 Score=20.04 Aligned_cols=18 Identities=11% Similarity=0.316 Sum_probs=13.6
Q ss_pred CeeEEEeCCcEEEEeCCC
Q 017198 8 YHTLLISNSSVFSCGSSL 25 (375)
Q Consensus 8 ~~~~~l~~g~l~~wG~n~ 25 (375)
.|++++.+++||++|-..
T Consensus 7 ~hs~~~~~~~iyi~GG~~ 24 (42)
T PF13854_consen 7 GHSAVVVGNNIYIFGGYS 24 (42)
T ss_pred ceEEEEECCEEEEEcCcc
Confidence 466666779999999654
No 82
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=37.88 E-value=1.9e+02 Score=24.84 Aligned_cols=70 Identities=13% Similarity=0.117 Sum_probs=40.8
Q ss_pred EecCCceEEEEEcCCcEEEeeCCCCCcccCCCCCCceecCEEccccCCcCeEEEEccCC--eEEEEEcCCCEEEEeCCCC
Q 017198 55 VSASENHAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGLN--FTGFLTIRGHVHTCGSNTH 132 (375)
Q Consensus 55 i~~g~~~~~~lt~~g~vy~~G~n~~gqlg~~~~~~~~~~p~~i~~~~~~~i~~v~~g~~--~~~~lt~~g~v~~~G~n~~ 132 (375)
|.-.....++.+.+|.||+|-.|.+|++-...... ...-...|..+.. ..+.-..+|+++.|-.-..
T Consensus 66 v~~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~-----------~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~ 134 (238)
T KOG2444|consen 66 VVTASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSG-----------EESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPN 134 (238)
T ss_pred ecccCceEEeecccceEEEecCCccchHHHhhhcc-----------cccceeccccccccceeEEeccCCceeeeccccC
Confidence 33445667888999999999999776654322211 1111233444555 4455566888888854433
Q ss_pred Ccc
Q 017198 133 GQL 135 (375)
Q Consensus 133 g~l 135 (375)
-.+
T Consensus 135 k~~ 137 (238)
T KOG2444|consen 135 KVL 137 (238)
T ss_pred cee
Confidence 333
No 83
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=37.09 E-value=85 Score=28.37 Aligned_cols=58 Identities=19% Similarity=0.167 Sum_probs=40.2
Q ss_pred EEEEEcCCcEEEeeCCCCCcccCCCCCCceecCEEccccCCcCeEEEEccCCe--EEEEEcCCCEEEEe
Q 017198 62 AAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGLNF--TGFLTIRGHVHTCG 128 (375)
Q Consensus 62 ~~~lt~~g~vy~~G~n~~gqlg~~~~~~~~~~p~~i~~~~~~~i~~v~~g~~~--~~~lt~~g~v~~~G 128 (375)
.++..+.|+||+|-.... ++...++......+..|++.+....- .+++.+++.||.|-
T Consensus 322 la~gnq~g~v~vwdL~~~---------ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwd 381 (385)
T KOG1034|consen 322 LALGNQSGKVYVWDLDNN---------EPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWD 381 (385)
T ss_pred HhhccCCCcEEEEECCCC---------CCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEE
Confidence 455566799999964441 22355667777777788888876554 45678889999884
No 84
>TIGR01062 parC_Gneg DNA topoisomerase IV, A subunit, proteobacterial. Operationally, topoisomerase IV is a type II topoisomerase required for the decatenation of chromosome segregation. Not every bacterium has both a topo II and a topo IV. The topo IV families of the Gram-positive bacteria and the Gram-negative bacteria appear not to represent a single clade among the type II topoisomerases, and are represented by separate models for this reason.
Probab=37.03 E-value=4.9e+02 Score=26.89 Aligned_cols=133 Identities=14% Similarity=0.122 Sum_probs=71.8
Q ss_pred eecCCCCCCEEEEe--cCCceEEEEEcCCcEEEeeCCCCCcccCCCCCCceecCE--EccccCCcCeEEEEccCC--eEE
Q 017198 43 RINFPSAAHVVQVS--ASENHAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPR--LVEALKGVPCKQVTAGLN--FTG 116 (375)
Q Consensus 43 ~~~~~~~~~i~~i~--~g~~~~~~lt~~g~vy~~G~n~~gqlg~~~~~~~~~~p~--~i~~~~~~~i~~v~~g~~--~~~ 116 (375)
-+.+.+...++.+. ...+..+++|++|++|.+..++-- .|.+ .-.|. .+...++.+|+.+.+... +.+
T Consensus 518 aikLKegD~L~~~~~~~t~d~LllfTs~Gr~yrf~v~eIP-~GR~-----aGgpV~~~L~L~~gE~Iv~~~~v~~~~~lL 591 (735)
T TIGR01062 518 TLKYKAGDSEKAIIEGKSNQKVVFIDSTGRSYALDPDNLP-SARG-----QGEPLTGKLLLPIGATITNILMYSPNQLLL 591 (735)
T ss_pred ccCcCCCCeEEEEEEecCCCEEEEEECCCeEEEEEhHhcC-cCcc-----CCceeEeeecCCCCCEEEEEEEecCCcEEE
Confidence 33444444454443 345679999999999999766531 1211 12222 233345667777766443 478
Q ss_pred EEEcCCCEEEEeCCCCCcccCCCCCCCCcceeecCCCCCCCEEEEE--eCC-CeEEEEECCCcEEEEeCCCCCcc
Q 017198 117 FLTIRGHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIA--AGP-SYMLAVTGNGVVYSFGSGSNFCL 188 (375)
Q Consensus 117 ~lt~~g~v~~~G~n~~g~lg~~~~~~~~~p~~~~~~~~~~~i~~i~--~g~-~~~~~lt~~g~v~~~G~n~~gql 188 (375)
++|+.|..+..-.+.+.....+ -..+..+.....++.+. .+. .+.++++++|++..+-.+.-.++
T Consensus 592 laT~~GyGKrt~lse~~~~~Ra-------GKgvi~Lk~~d~lv~v~~v~~~dd~V~liT~~GrlLrf~v~EIp~~ 659 (735)
T TIGR01062 592 MASDAGYGFLCNFNDLIARNKA-------GKALINLPENASVIAPLPVNGDSDMIAAITEAGRMLVFPIDDLPEL 659 (735)
T ss_pred EEEcCCcEEEEEhHhccccCcC-------CeEEEEeCCCCEEEEEEEEcCCCCEEEEEeCCCcEEEEEHHHCCcc
Confidence 8899997776644333211111 01111111223333222 233 35778999999999876554433
No 85
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=36.46 E-value=3.8e+02 Score=25.37 Aligned_cols=71 Identities=13% Similarity=0.029 Sum_probs=39.5
Q ss_pred cCeEEEEcc-CCeEEEEEcCCCEEEEeCCCCCcccCCCCCCCCcceeecCCCC-CCCEEEEEeCCCeEEEEECCCcEEEE
Q 017198 103 VPCKQVTAG-LNFTGFLTIRGHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEE-VGSVVQIAAGPSYMLAVTGNGVVYSF 180 (375)
Q Consensus 103 ~~i~~v~~g-~~~~~~lt~~g~v~~~G~n~~g~lg~~~~~~~~~p~~~~~~~~-~~~i~~i~~g~~~~~~lt~~g~v~~~ 180 (375)
.+|+.+.-. ....++|.++|.++.+- -+|.. ....+..+....- ..++-.+..+..-.++||.++++|..
T Consensus 81 ~~iv~~~wt~~e~LvvV~~dG~v~vy~--~~G~~------~fsl~~~i~~~~v~e~~i~~~~~~~~GivvLt~~~~~~~v 152 (410)
T PF04841_consen 81 GRIVGMGWTDDEELVVVQSDGTVRVYD--LFGEF------QFSLGEEIEEEKVLECRIFAIWFYKNGIVVLTGNNRFYVV 152 (410)
T ss_pred CCEEEEEECCCCeEEEEEcCCEEEEEe--CCCce------eechhhhccccCcccccccccccCCCCEEEECCCCeEEEE
Confidence 356666553 45677899999988872 22322 1111222211110 02333445555668889999999987
Q ss_pred e
Q 017198 181 G 181 (375)
Q Consensus 181 G 181 (375)
-
T Consensus 153 ~ 153 (410)
T PF04841_consen 153 N 153 (410)
T ss_pred e
Confidence 3
No 86
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=35.82 E-value=2.9e+02 Score=23.92 Aligned_cols=40 Identities=18% Similarity=0.191 Sum_probs=27.4
Q ss_pred CCCcceeecCCCCCCCEEEEEeCCCeEEEEECCCcEEEEeC
Q 017198 142 DRPTPKSIAPLEEVGSVVQIAAGPSYMLAVTGNGVVYSFGS 182 (375)
Q Consensus 142 ~~~~p~~~~~~~~~~~i~~i~~g~~~~~~lt~~g~v~~~G~ 182 (375)
....|.++-.-.. ..|.+|....+-.++=..||.+-.+-.
T Consensus 133 ~s~ePiQildea~-D~V~Si~v~~heIvaGS~DGtvRtydi 172 (307)
T KOG0316|consen 133 RSFEPIQILDEAK-DGVSSIDVAEHEIVAGSVDGTVRTYDI 172 (307)
T ss_pred CCCCccchhhhhc-CceeEEEecccEEEeeccCCcEEEEEe
Confidence 3455665544322 678888888888888888998877643
No 87
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=35.57 E-value=68 Score=16.92 Aligned_cols=17 Identities=12% Similarity=0.104 Sum_probs=12.6
Q ss_pred cEEEEEcCCcEEEEeCC
Q 017198 273 KTFVLVDTGSVYGFGWM 289 (375)
Q Consensus 273 ~~~~l~~~g~vy~~G~n 289 (375)
+.++++.+|+||+.-.+
T Consensus 5 ~gvav~~~g~i~VaD~~ 21 (28)
T PF01436_consen 5 HGVAVDSDGNIYVADSG 21 (28)
T ss_dssp EEEEEETTSEEEEEECC
T ss_pred cEEEEeCCCCEEEEECC
Confidence 56778888999886644
No 88
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=35.56 E-value=1.9e+02 Score=26.98 Aligned_cols=62 Identities=18% Similarity=0.140 Sum_probs=44.3
Q ss_pred CeEEEEccCCe---EEEEEcCCCEEEEeCCCCCcccCCCCCCCCcceeecCCCCCCCEEEEEeCCCeEEEEECCCcEEEE
Q 017198 104 PCKQVTAGLNF---TGFLTIRGHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGPSYMLAVTGNGVVYSF 180 (375)
Q Consensus 104 ~i~~v~~g~~~---~~~lt~~g~v~~~G~n~~g~lg~~~~~~~~~p~~~~~~~~~~~i~~i~~g~~~~~~lt~~g~v~~~ 180 (375)
.+..++++..+ .+++-.+|++..|-.+ ....++. ....+.+|..-.....|++..|.||.+
T Consensus 161 ~~~~~~~~~~~~~~vl~i~~~g~l~~w~~~--------------~Wt~l~~--~~~~~~DIi~~kGkfYAvD~~G~l~~i 224 (373)
T PLN03215 161 ALVKVKEGDNHRDGVLGIGRDGKINYWDGN--------------VLKALKQ--MGYHFSDIIVHKGQTYALDSIGIVYWI 224 (373)
T ss_pred EEEEeecCCCcceEEEEEeecCcEeeecCC--------------eeeEccC--CCceeeEEEEECCEEEEEcCCCeEEEE
Confidence 34445666665 6777888999888532 2333332 226799999989899999999999998
Q ss_pred e
Q 017198 181 G 181 (375)
Q Consensus 181 G 181 (375)
.
T Consensus 225 ~ 225 (373)
T PLN03215 225 N 225 (373)
T ss_pred e
Confidence 6
No 89
>PF07312 DUF1459: Protein of unknown function (DUF1459); InterPro: IPR009924 This family consists of several hypothetical Caenorhabditis elegans proteins of around 85 residues in length. The function of this family is unknown.
Probab=35.25 E-value=25 Score=24.11 Aligned_cols=11 Identities=18% Similarity=0.646 Sum_probs=8.4
Q ss_pred CE-EEeeCCCCC
Q 017198 337 RL-FGFGDNERA 347 (375)
Q Consensus 337 ~v-~~wG~n~~g 347 (375)
.+ |+||+|..-
T Consensus 57 sv~waWGSNKnk 68 (84)
T PF07312_consen 57 SVYWAWGSNKNK 68 (84)
T ss_pred ceeeeeccCCCC
Confidence 35 999999744
No 90
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=33.96 E-value=4.1e+02 Score=25.22 Aligned_cols=107 Identities=19% Similarity=0.199 Sum_probs=0.0
Q ss_pred CCeeEEE-eCCcEEEEeCCCCCccCCCCCCCeeeeeeeecCCCCC-CEEEEecCCceEEEEEc--CCcEEEeeCCCCCcc
Q 017198 7 RYHTLLI-SNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAA-HVVQVSASENHAAFVLQ--SGQVFTCGDNSSFCC 82 (375)
Q Consensus 7 ~~~~~~l-~~g~l~~wG~n~~g~Lg~~~~~~~~~~~~~~~~~~~~-~i~~i~~g~~~~~~lt~--~g~vy~~G~n~~gql 82 (375)
..++.++ .||-||.-|.-+ |++-+-+..+ ....-+||.-. +|+.|+.+.+..++.+. |+.|..|-...
T Consensus 349 ~~ts~~fHpDgLifgtgt~d-~~vkiwdlks---~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRK---- 420 (506)
T KOG0289|consen 349 EYTSAAFHPDGLIFGTGTPD-GVVKIWDLKS---QTNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRK---- 420 (506)
T ss_pred eeEEeeEcCCceEEeccCCC-ceEEEEEcCC---ccccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehh----
Q ss_pred cCCCCCCceecCEEccccCCcCeEEEEccCCeEEEEEcCCCEEEE
Q 017198 83 GHRDTNRPIFRPRLVEALKGVPCKQVTAGLNFTGFLTIRGHVHTC 127 (375)
Q Consensus 83 g~~~~~~~~~~p~~i~~~~~~~i~~v~~g~~~~~~lt~~g~v~~~ 127 (375)
...+....+.......-..+--...+..+-.++=+||.+
T Consensus 421 ------l~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~ 459 (506)
T KOG0289|consen 421 ------LKNFKTIQLDEKKEVNSLSFDQSGTYLGIAGSDLQVYIC 459 (506)
T ss_pred ------hcccceeeccccccceeEEEcCCCCeEEeecceeEEEEE
No 91
>PF13964 Kelch_6: Kelch motif
Probab=33.71 E-value=41 Score=20.49 Aligned_cols=19 Identities=11% Similarity=0.226 Sum_probs=14.1
Q ss_pred CeeEEEeCCcEEEEeCCCC
Q 017198 8 YHTLLISNSSVFSCGSSLC 26 (375)
Q Consensus 8 ~~~~~l~~g~l~~wG~n~~ 26 (375)
.|+++.-+++||++|-...
T Consensus 4 ~~s~v~~~~~iyv~GG~~~ 22 (50)
T PF13964_consen 4 GHSAVVVGGKIYVFGGYDN 22 (50)
T ss_pred cCEEEEECCEEEEECCCCC
Confidence 4555558889999997654
No 92
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=33.41 E-value=1.5e+02 Score=26.12 Aligned_cols=17 Identities=24% Similarity=0.550 Sum_probs=15.1
Q ss_pred CCeeEEEeCCcEEEEeC
Q 017198 7 RYHTLLISNSSVFSCGS 23 (375)
Q Consensus 7 ~~~~~~l~~g~l~~wG~ 23 (375)
+.|+.+.-+|++|++|-
T Consensus 242 RSHS~fvYng~~Y~FGG 258 (392)
T KOG4693|consen 242 RSHSTFVYNGKMYMFGG 258 (392)
T ss_pred cccceEEEcceEEEecc
Confidence 67888889999999994
No 93
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=32.89 E-value=4.1e+02 Score=24.71 Aligned_cols=65 Identities=17% Similarity=0.202 Sum_probs=34.1
Q ss_pred CeEEEEccCC-eE-EEEEcCCC-EEEEeCCCCCcccCCCCCCCCcceeecCCCCCCCEEEEEeCC-CeEEEEECCCcEEE
Q 017198 104 PCKQVTAGLN-FT-GFLTIRGH-VHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGP-SYMLAVTGNGVVYS 179 (375)
Q Consensus 104 ~i~~v~~g~~-~~-~~lt~~g~-v~~~G~n~~g~lg~~~~~~~~~p~~~~~~~~~~~i~~i~~g~-~~~~~lt~~g~v~~ 179 (375)
.+..|..|.. |. ++.+.||+ +|+.+.+ +.+ .+-++.....+..|..|. -+.++++.+|+...
T Consensus 28 ~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rd--g~v------------sviD~~~~~~v~~i~~G~~~~~i~~s~DG~~~~ 93 (369)
T PF02239_consen 28 VVARIPTGGAPHAGLKFSPDGRYLYVANRD--GTV------------SVIDLATGKVVATIKVGGNPRGIAVSPDGKYVY 93 (369)
T ss_dssp EEEEEE-STTEEEEEE-TT-SSEEEEEETT--SEE------------EEEETTSSSEEEEEE-SSEEEEEEE--TTTEEE
T ss_pred EEEEEcCCCCceeEEEecCCCCEEEEEcCC--CeE------------EEEECCcccEEEEEecCCCcceEEEcCCCCEEE
Confidence 4566666544 44 45677776 7776432 222 223333335677888775 56788888887655
Q ss_pred EeC
Q 017198 180 FGS 182 (375)
Q Consensus 180 ~G~ 182 (375)
-+.
T Consensus 94 v~n 96 (369)
T PF02239_consen 94 VAN 96 (369)
T ss_dssp EEE
T ss_pred EEe
Confidence 444
No 94
>PF03785 Peptidase_C25_C: Peptidase family C25, C terminal ig-like domain; InterPro: IPR005536 This domain is found in almost all members of MEROPS peptidase family C25, (clan CD). Peptidase family C25 is a protein family found in the bacteria Porphyromonas gingivalis (Bacteroides gingivalis) a Gram-negative anaerobic bacterial species strongly associated with adult periodontitis. One of its distinguishing characteristics and putative virulence properties is the ability to agglutinate erythrocytes []. It is a highly proteolytic organism which metabolises small peptides and amino acids. Indirect evidence suggests that the proteases produced by this microorganism constitute an important virulence factor []. Protease-encoding genes have been shown to contain multiple copies of repeated nucleotide sequences. These conserved sequences have also been found in haemagglutinin genes [].; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 1CVR_A.
Probab=31.43 E-value=79 Score=22.01 Aligned_cols=45 Identities=11% Similarity=0.075 Sum_probs=30.2
Q ss_pred CcEEEEEeC-CCceEEEEcCCCEEEeeCCCCCCCCcCCCCCcccce
Q 017198 317 HHVSQISTG-LYHTVVVTDRGRLFGFGDNERAQLGHDTLRGCLEPT 361 (375)
Q Consensus 317 ~~i~~i~~G-~~h~~~l~~~g~v~~wG~n~~gqlG~g~~~~~~~p~ 361 (375)
..=..|+|. ....++|++||.+|+-+--+.|++=..-+..++.|.
T Consensus 16 ~tS~~Vs~~~~gs~ValS~dg~l~G~ai~~sG~ati~l~~~it~~~ 61 (81)
T PF03785_consen 16 QTSISVSCDVPGSYVALSQDGDLYGKAIVNSGNATINLTNPITDEG 61 (81)
T ss_dssp -SEEEEEESSTT-EEEEEETTEEEEEEE-BTTEEEEE-SS--TT-S
T ss_pred ccEEEEEecCCCcEEEEecCCEEEEEEEecCceEEEECCcccCCCc
Confidence 356789999 888899999999999997667777666554444443
No 95
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=30.51 E-value=1.7e+02 Score=25.36 Aligned_cols=110 Identities=14% Similarity=0.119 Sum_probs=54.0
Q ss_pred eCCcEEEEeCCCCCccCCCCCCCeeeeeeeecCCCCC----CEEEEecCC-ceEEEEEcCCcEEEeeCCCCCcccCCCCC
Q 017198 14 SNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAA----HVVQVSASE-NHAAFVLQSGQVFTCGDNSSFCCGHRDTN 88 (375)
Q Consensus 14 ~~g~l~~wG~n~~g~Lg~~~~~~~~~~~~~~~~~~~~----~i~~i~~g~-~~~~~lt~~g~vy~~G~n~~gqlg~~~~~ 88 (375)
.||++..-|-+..|.- .. ....|....... ...+++.++ .-+..+..||++++.|-....-...-+..
T Consensus 76 ~dG~ll~tGG~~~G~~-----~i--r~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L~DG~vlIvGG~~~~t~E~~P~~ 148 (243)
T PF07250_consen 76 PDGRLLQTGGDNDGNK-----AI--RIFTPCTSDGTCDWTESPNDMQSGRWYPTATTLPDGRVLIVGGSNNPTYEFWPPK 148 (243)
T ss_pred CCCCEEEeCCCCcccc-----ce--EEEecCCCCCCCCceECcccccCCCccccceECCCCCEEEEeCcCCCcccccCCc
Confidence 7888888886654221 11 122222211111 122356664 55788889999999986551111110110
Q ss_pred CceecCEEccccCCcCeEEEEccCCeEEEEEcCCCEEEEeCCC
Q 017198 89 RPIFRPRLVEALKGVPCKQVTAGLNFTGFLTIRGHVHTCGSNT 131 (375)
Q Consensus 89 ~~~~~p~~i~~~~~~~i~~v~~g~~~~~~lt~~g~v~~~G~n~ 131 (375)
.....+..+..+.... .......+=.+.|..+|+||.++.+.
T Consensus 149 ~~~~~~~~~~~l~~~~-~~~~~nlYP~~~llPdG~lFi~an~~ 190 (243)
T PF07250_consen 149 GPGPGPVTLPFLSQTS-DTLPNNLYPFVHLLPDGNLFIFANRG 190 (243)
T ss_pred cCCCCceeeecchhhh-ccCccccCceEEEcCCCCEEEEEcCC
Confidence 0011112222222110 11223444467888999999998764
No 96
>PF03785 Peptidase_C25_C: Peptidase family C25, C terminal ig-like domain; InterPro: IPR005536 This domain is found in almost all members of MEROPS peptidase family C25, (clan CD). Peptidase family C25 is a protein family found in the bacteria Porphyromonas gingivalis (Bacteroides gingivalis) a Gram-negative anaerobic bacterial species strongly associated with adult periodontitis. One of its distinguishing characteristics and putative virulence properties is the ability to agglutinate erythrocytes []. It is a highly proteolytic organism which metabolises small peptides and amino acids. Indirect evidence suggests that the proteases produced by this microorganism constitute an important virulence factor []. Protease-encoding genes have been shown to contain multiple copies of repeated nucleotide sequences. These conserved sequences have also been found in haemagglutinin genes [].; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 1CVR_A.
Probab=29.79 E-value=94 Score=21.65 Aligned_cols=32 Identities=16% Similarity=0.090 Sum_probs=24.9
Q ss_pred CEEEEecC-CceEEEEEcCCcEEEeeCCCCCcc
Q 017198 51 HVVQVSAS-ENHAAFVLQSGQVFTCGDNSSFCC 82 (375)
Q Consensus 51 ~i~~i~~g-~~~~~~lt~~g~vy~~G~n~~gql 82 (375)
.=..|+|. ....++|++||.||.-+--+.|++
T Consensus 17 tS~~Vs~~~~gs~ValS~dg~l~G~ai~~sG~a 49 (81)
T PF03785_consen 17 TSISVSCDVPGSYVALSQDGDLYGKAIVNSGNA 49 (81)
T ss_dssp SEEEEEESSTT-EEEEEETTEEEEEEE-BTTEE
T ss_pred cEEEEEecCCCcEEEEecCCEEEEEEEecCceE
Confidence 66789999 899999999999999886555543
No 97
>TIGR01062 parC_Gneg DNA topoisomerase IV, A subunit, proteobacterial. Operationally, topoisomerase IV is a type II topoisomerase required for the decatenation of chromosome segregation. Not every bacterium has both a topo II and a topo IV. The topo IV families of the Gram-positive bacteria and the Gram-negative bacteria appear not to represent a single clade among the type II topoisomerases, and are represented by separate models for this reason.
Probab=29.79 E-value=6.5e+02 Score=26.06 Aligned_cols=164 Identities=12% Similarity=0.105 Sum_probs=88.2
Q ss_pred EEecCCceEEEEEcCCcEEEeeCCCCCcccCCCCCCceecCEEccccCCcCeEEE--EccCCeEEEEEcCCCEEEEeCCC
Q 017198 54 QVSASENHAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQV--TAGLNFTGFLTIRGHVHTCGSNT 131 (375)
Q Consensus 54 ~i~~g~~~~~~lt~~g~vy~~G~n~~gqlg~~~~~~~~~~p~~i~~~~~~~i~~v--~~g~~~~~~lt~~g~v~~~G~n~ 131 (375)
++..-...++++|++|-|-..-...+. +..+..-++..+..+ +.+....+++|++|++|.+-.+.
T Consensus 489 ~~i~~e~v~VilTk~G~IKr~~~~~~~-------------~saikLKegD~L~~~~~~~t~d~LllfTs~Gr~yrf~v~e 555 (735)
T TIGR01062 489 DMIPKEPVTIILSKMGWVRSAKGHDID-------------LSTLKYKAGDSEKAIIEGKSNQKVVFIDSTGRSYALDPDN 555 (735)
T ss_pred hcccCcceEEEEecCCEEEeccccccc-------------hhccCcCCCCeEEEEEEecCCCEEEEEECCCeEEEEEhHh
Confidence 334457788999999977654333321 112222223334433 34556689999999999997654
Q ss_pred CCcccCCCCCCCCcceee-cCCCCCCCEEEEEeCCC--eEEEEECCCcEEEEeCCCCCccCCCCCCCccCceeeeccccC
Q 017198 132 HGQLGHGDTLDRPTPKSI-APLEEVGSVVQIAAGPS--YMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRK 208 (375)
Q Consensus 132 ~g~lg~~~~~~~~~p~~~-~~~~~~~~i~~i~~g~~--~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~p~~i~~~~~~ 208 (375)
-- .|. ..-.|... -.+...++|+.+.+... +.+++|+.|..+..-.+.+..... .-..+..+...
T Consensus 556 IP-~GR----~aGgpV~~~L~L~~gE~Iv~~~~v~~~~~lLlaT~~GyGKrt~lse~~~~~R-------aGKgvi~Lk~~ 623 (735)
T TIGR01062 556 LP-SAR----GQGEPLTGKLLLPIGATITNILMYSPNQLLLMASDAGYGFLCNFNDLIARNK-------AGKALINLPEN 623 (735)
T ss_pred cC-cCc----cCCceeEeeecCCCCCEEEEEEEecCCcEEEEEEcCCcEEEEEhHhccccCc-------CCeEEEEeCCC
Confidence 32 121 22233332 23445578888887653 578888888777664433221110 01111111111
Q ss_pred CccEEEE--EcCC-CeEEEEeCCCCEEEEeCCCCCCCC
Q 017198 209 GIHVVRV--SAGD-EHVVALDSSGYVYTWGKGYCGALG 243 (375)
Q Consensus 209 ~~~i~~i--~~g~-~~~~~lt~~g~v~~~G~n~~gqlg 243 (375)
. .++.+ ..+. .+.++++++|++..+-.+.--.++
T Consensus 624 d-~lv~v~~v~~~dd~V~liT~~GrlLrf~v~EIp~~g 660 (735)
T TIGR01062 624 A-SVIAPLPVNGDSDMIAAITEAGRMLVFPIDDLPELS 660 (735)
T ss_pred C-EEEEEEEEcCCCCEEEEEeCCCcEEEEEHHHCCccC
Confidence 1 22221 2233 357788999999988765544444
No 98
>cd00058 FGF Acidic and basic fibroblast growth factor family; FGFs are mitogens, which stimulate growth or differentiation of cells of mesodermal or neuroectodermal origin. The family plays essential roles in patterning and differentiation during vertebrate embryogenesis, and has neurotrophic activities. FGFs have a high affinity for heparan sulfate proteoglycans and require heparan sulfate to activate one of four cell surface FGF receptors. Upon binding to FGF, the receptors dimerize and their intracellular tyrosine kinase domains become active. FGFs have internal pseudo-threefold symmetry (beta-trefoil topology).
Probab=29.58 E-value=2.5e+02 Score=21.31 Aligned_cols=63 Identities=13% Similarity=-0.048 Sum_probs=34.9
Q ss_pred EEecCCceEEEEEcCCcEEEeeCCCCCcccCCCCCCceecCEEccccCCcCeEEEEccCCeEEEEEcCCCEEEE
Q 017198 54 QVSASENHAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGLNFTGFLTIRGHVHTC 127 (375)
Q Consensus 54 ~i~~g~~~~~~lt~~g~vy~~G~n~~gqlg~~~~~~~~~~p~~i~~~~~~~i~~v~~g~~~~~~lt~~g~v~~~ 127 (375)
++.|-..+.+-+..||+|-...... . ...--.+.......|.--..-....++++++|+||.-
T Consensus 2 qLy~~~~~~L~I~~dG~V~Gt~~~~----------~-~~s~l~~~s~~~g~v~i~~v~s~~YLCmn~~G~ly~s 64 (123)
T cd00058 2 QLYCRTGFHLQILPDGTVDGTRDDS----------S-SYTILERIAVAVGVVSIKGVASCRYLCMNKCGKLYGS 64 (123)
T ss_pred eEEEcCCeEEEEcCCCcEecccCCC----------C-CCceEEEEECCCCEEEEEEcccceEEEECCCCCEEEC
Confidence 4556557777888899986543222 0 1111222222222333333345667889999999974
No 99
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=29.40 E-value=4.2e+02 Score=23.79 Aligned_cols=18 Identities=11% Similarity=0.008 Sum_probs=12.6
Q ss_pred eeEEEeCCcEEEEeCCCC
Q 017198 9 HTLLISNSSVFSCGSSLC 26 (375)
Q Consensus 9 ~~~~l~~g~l~~wG~n~~ 26 (375)
+++++-++.||+.|-...
T Consensus 7 ~~~~~~~~~l~v~GG~~~ 24 (323)
T TIGR03548 7 CYAGIIGDYILVAGGCNF 24 (323)
T ss_pred EeeeEECCEEEEeeccCC
Confidence 445557788999997643
No 100
>PF09081 DUF1921: Domain of unknown function (DUF1921); InterPro: IPR015165 This domain, which is found in a set of prokaryotic amylases, has no known function []. ; PDB: 1QI5_A 1JDC_A 2AMG_A 1QPK_A 1JDD_A 1QI4_A 1JDA_A 1GCY_A 1QI3_A.
Probab=29.14 E-value=51 Score=20.10 Aligned_cols=20 Identities=20% Similarity=0.323 Sum_probs=11.4
Q ss_pred eeeecCCeeEEE-eCCcEEEE
Q 017198 2 QITTGRYHTLLI-SNSSVFSC 21 (375)
Q Consensus 2 ~i~~G~~~~~~l-~~g~l~~w 21 (375)
+|++|...-.+- ++|.|-+|
T Consensus 30 qVasGsfs~a~N~dnG~vRiW 50 (51)
T PF09081_consen 30 QVASGSFSQAVNEDNGQVRIW 50 (51)
T ss_dssp GT-SS--EEEEEETTTTEEEE
T ss_pred cccccchHhhhhccCCcEEee
Confidence 355555555444 78889888
No 101
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=27.68 E-value=4.8e+02 Score=23.90 Aligned_cols=79 Identities=14% Similarity=-0.012 Sum_probs=38.6
Q ss_pred CEEEEec-CCceEEEEEcCCcEEEeeCCCCCcccCCCCCCceecCEEccccCC-cCeEEEEccCCeEEEEEcCCCEEEEe
Q 017198 51 HVVQVSA-SENHAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKG-VPCKQVTAGLNFTGFLTIRGHVHTCG 128 (375)
Q Consensus 51 ~i~~i~~-g~~~~~~lt~~g~vy~~G~n~~gqlg~~~~~~~~~~p~~i~~~~~-~~i~~v~~g~~~~~~lt~~g~v~~~G 128 (375)
.+.-+.| +....+--+.||.|-.|---..++...-...... |.+...+.. .+=..++|| +-....+-.|+.|-
T Consensus 75 ~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~--~~~f~~ld~nck~~ii~~G---tE~~~s~A~v~lwD 149 (376)
T KOG1188|consen 75 GVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQS--GTPFICLDLNCKKNIIACG---TELTRSDASVVLWD 149 (376)
T ss_pred ceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCC--CCcceEeeccCcCCeEEec---cccccCceEEEEEE
Confidence 5566666 4444555567899999976665544433322211 222222221 112334455 12222334567776
Q ss_pred CCCCCc
Q 017198 129 SNTHGQ 134 (375)
Q Consensus 129 ~n~~g~ 134 (375)
.....|
T Consensus 150 vR~~qq 155 (376)
T KOG1188|consen 150 VRSEQQ 155 (376)
T ss_pred eccccc
Confidence 655555
No 102
>PLN02193 nitrile-specifier protein
Probab=27.64 E-value=2.6e+02 Score=26.98 Aligned_cols=17 Identities=18% Similarity=0.561 Sum_probs=12.8
Q ss_pred CeeEEEeCCcEEEEeCC
Q 017198 8 YHTLLISNSSVFSCGSS 24 (375)
Q Consensus 8 ~~~~~l~~g~l~~wG~n 24 (375)
.|++++.+++||++|-.
T Consensus 271 ~h~~~~~~~~iYv~GG~ 287 (470)
T PLN02193 271 FHSMAADEENVYVFGGV 287 (470)
T ss_pred ceEEEEECCEEEEECCC
Confidence 46655588899999964
No 103
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=27.58 E-value=2e+02 Score=25.04 Aligned_cols=73 Identities=15% Similarity=0.221 Sum_probs=35.5
Q ss_pred eecCCe-eEEE-eCCcEEEEeCCCCCccCCCCCCCeeeeeeeecCCCCCCEEE-EecCCceEEEEEcCCcEEEeeCCC
Q 017198 4 TTGRYH-TLLI-SNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQ-VSASENHAAFVLQSGQVFTCGDNS 78 (375)
Q Consensus 4 ~~G~~~-~~~l-~~g~l~~wG~n~~g~Lg~~~~~~~~~~~~~~~~~~~~~i~~-i~~g~~~~~~lt~~g~vy~~G~n~ 78 (375)
+.+++. +..+ .||++++.|-....-.-.-.... ..+.+..++......+ ......=.++|..||+||+++.+.
T Consensus 115 ~~~RWYpT~~~L~DG~vlIvGG~~~~t~E~~P~~~--~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~ 190 (243)
T PF07250_consen 115 QSGRWYPTATTLPDGRVLIVGGSNNPTYEFWPPKG--PGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRG 190 (243)
T ss_pred cCCCccccceECCCCCEEEEeCcCCCcccccCCcc--CCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCC
Confidence 344433 4445 99999999965411111100000 0111111111111211 112333378889999999998775
No 104
>cd00265 MADS_MEF2_like MEF2 (myocyte enhancer factor 2)-like/Type II subfamily of MADS ( MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators. Binds DNA and exists as hetero and homo-dimers. Differs from SRF-like/Type I subgroup mainly in position of the alpha helix responsible for the dimerization interface. Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi.
Probab=27.49 E-value=75 Score=21.90 Aligned_cols=24 Identities=17% Similarity=0.259 Sum_probs=19.7
Q ss_pred eeeecCCeeEEE--eCCcEEEEeCCC
Q 017198 2 QITTGRYHTLLI--SNSSVFSCGSSL 25 (375)
Q Consensus 2 ~i~~G~~~~~~l--~~g~l~~wG~n~ 25 (375)
.+-|+...++++ .+|++|.|+..+
T Consensus 35 s~Lc~~~v~lvv~sp~gk~~~f~s~s 60 (77)
T cd00265 35 SVLCDAEVALIIFSSSGKLYEFSSPS 60 (77)
T ss_pred eeccCCceeEEEEcCCCceEEecCCC
Confidence 577898888887 789999998654
No 105
>PLN02772 guanylate kinase
Probab=25.95 E-value=1.7e+02 Score=27.55 Aligned_cols=65 Identities=15% Similarity=0.118 Sum_probs=35.2
Q ss_pred CCeeEEEeCCcEEEEeC-CCCCccCC----CCCCCee-eeeeeecCCCCCCEEEEecCCceEEEEEcCCcEEEeeCCC
Q 017198 7 RYHTLLISNSSVFSCGS-SLCGVLGH----GPETTQC-VSFTRINFPSAAHVVQVSASENHAAFVLQSGQVFTCGDNS 78 (375)
Q Consensus 7 ~~~~~~l~~g~l~~wG~-n~~g~Lg~----~~~~~~~-~~~~~~~~~~~~~i~~i~~g~~~~~~lt~~g~vy~~G~n~ 78 (375)
..|+++.-.+++|+||- |+.+.+.. -+..... ..|+-.-.++ .....|++++..+.++++.+...
T Consensus 26 ~~~tav~igdk~yv~GG~~d~~~~~~~v~i~D~~t~~W~~P~V~G~~P-------~~r~GhSa~v~~~~rilv~~~~~ 96 (398)
T PLN02772 26 NRETSVTIGDKTYVIGGNHEGNTLSIGVQILDKITNNWVSPIVLGTGP-------KPCKGYSAVVLNKDRILVIKKGS 96 (398)
T ss_pred CcceeEEECCEEEEEcccCCCccccceEEEEECCCCcEecccccCCCC-------CCCCcceEEEECCceEEEEeCCC
Confidence 34666667899999995 44332221 1111111 1111111111 12367999999999999997554
No 106
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=25.62 E-value=5.4e+02 Score=23.80 Aligned_cols=63 Identities=10% Similarity=0.155 Sum_probs=36.3
Q ss_pred EE-eCCc-EEEEeCCCCCccCCCCCCCeeeeeeeecCCCCCCEEEEecCCc-e--------EEEEEcCCc-EEEeeCCC
Q 017198 12 LI-SNSS-VFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSASEN-H--------AAFVLQSGQ-VFTCGDNS 78 (375)
Q Consensus 12 ~l-~~g~-l~~wG~n~~g~Lg~~~~~~~~~~~~~~~~~~~~~i~~i~~g~~-~--------~~~lt~~g~-vy~~G~n~ 78 (375)
++ .|++ +|++-. .+-++-+|...+ .-+.+.......+.+|..+.. + .+.|+.||+ +|+.....
T Consensus 52 ~~spDg~~lyva~~-~~~R~~~G~~~d---~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p 126 (352)
T TIGR02658 52 VVASDGSFFAHAST-VYSRIARGKRTD---YVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSP 126 (352)
T ss_pred eECCCCCEEEEEec-cccccccCCCCC---EEEEEECccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCC
Confidence 36 5555 555443 334444444444 334445555556666776544 3 889999987 78775443
No 107
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=24.53 E-value=3.4e+02 Score=28.90 Aligned_cols=49 Identities=8% Similarity=-0.031 Sum_probs=30.1
Q ss_pred CCcccCeeccCCCCCceEEE-EecCCcEEEEE--cCCcEEEEeCCCCCCCCC
Q 017198 248 IDKTLPEPLSSLKSHLAVQV-CARKRKTFVLV--DTGSVYGFGWMGFGSLGF 296 (375)
Q Consensus 248 ~~~~~p~~i~~~~~~~i~~i-~~g~~~~~~l~--~~g~vy~~G~n~~gqlg~ 296 (375)
.....|.++-.....-|..+ .|..+-.++|+ +|+++++|+-|.-..|+.
T Consensus 240 R~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~ 291 (1049)
T KOG0307|consen 240 RFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGE 291 (1049)
T ss_pred cccCCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeee
Confidence 34455666543333345555 46666455554 689999999887655543
No 108
>TIGR01061 parC_Gpos DNA topoisomerase IV, A subunit, Gram-positive. Operationally, topoisomerase IV is a type II topoisomerase required for the decatenation of chromosome segregation. Not every bacterium has both a topo II and a topo IV. The topo IV families of the Gram-positive bacteria and the Gram-negative bacteria appear not to represent a single clade among the type II topoisomerases, and are represented by separate models for this reason.
Probab=24.36 E-value=8.1e+02 Score=25.40 Aligned_cols=127 Identities=8% Similarity=0.014 Sum_probs=67.2
Q ss_pred EecCCceEEEEEcCCcEEEeeCCCCCcccCCCCCCceecCEEccccCCcCeEEEEccC------CeEEEEEcCCCEEEEe
Q 017198 55 VSASENHAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGL------NFTGFLTIRGHVHTCG 128 (375)
Q Consensus 55 i~~g~~~~~~lt~~g~vy~~G~n~~gqlg~~~~~~~~~~p~~i~~~~~~~i~~v~~g~------~~~~~lt~~g~v~~~G 128 (375)
++.+.++.+++|++|++|.+-..+--..+..... ......+..-++..|+.+.+-. .+.+++|++|.+--.-
T Consensus 538 ~~~~~d~IllfT~~Gkv~r~~~~eIp~~gr~a~G--v~Ivk~i~L~~~D~Iv~~~~v~~~~~~~~~ll~vT~~G~~KRt~ 615 (738)
T TIGR01061 538 IANTTDQILIFTSLGNIINIPVHKLADIRWKDLG--EHLSNKITFDENETIVFVGTMNEFDVDQPILVLASKLGMVKRIE 615 (738)
T ss_pred EecCCCEEEEEeCCCcEEEEEHHHCcCCCCCCCC--cChhhcccCCCCCeEEEEEEeccccCCCcEEEEEecCCeEEEeE
Confidence 3445677999999999999876553333322221 1112233333455676665533 2478899999776654
Q ss_pred CCCCCcccCCCCCCCCcceeecCCCCCCCEEEE--EeCCCeEEEEECCCcEEEEeCCCCCccC
Q 017198 129 SNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQI--AAGPSYMLAVTGNGVVYSFGSGSNFCLG 189 (375)
Q Consensus 129 ~n~~g~lg~~~~~~~~~p~~~~~~~~~~~i~~i--~~g~~~~~~lt~~g~v~~~G~n~~gqlg 189 (375)
...+... .+ ......-.+.....++.+ ....+..+++|++|.+..+-.+....+|
T Consensus 616 l~e~~~~-r~-----~kGv~~ikLk~~d~lV~a~~v~~~d~IlliT~~G~~iRf~~~dI~~~g 672 (738)
T TIGR01061 616 LTELNIK-RN-----SKATLCIKLKDKDHLISAFLQQKDKLICLVSDLGYALVFHTNEIPVVG 672 (738)
T ss_pred HHHhccc-cC-----CCceEEEeccCCCcEEEEEEeCCCCEEEEEECCCeEEEEEHHHCCccc
Confidence 3332211 00 011111111111333322 2345678899999999887665544333
No 109
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=23.84 E-value=1e+02 Score=18.18 Aligned_cols=16 Identities=13% Similarity=0.457 Sum_probs=12.0
Q ss_pred eeEEEeCCcEEEEeCC
Q 017198 9 HTLLISNSSVFSCGSS 24 (375)
Q Consensus 9 ~~~~l~~g~l~~wG~n 24 (375)
|+++.-+++||+.|--
T Consensus 5 ~~~~~~~~~iyv~GG~ 20 (47)
T PF01344_consen 5 HAAVVVGNKIYVIGGY 20 (47)
T ss_dssp EEEEEETTEEEEEEEB
T ss_pred CEEEEECCEEEEEeee
Confidence 4444499999999954
No 110
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=23.76 E-value=6.4e+02 Score=23.96 Aligned_cols=18 Identities=11% Similarity=0.274 Sum_probs=15.3
Q ss_pred CCeEEEEeCCCCEEEEeC
Q 017198 219 DEHVVALDSSGYVYTWGK 236 (375)
Q Consensus 219 ~~~~~~lt~~g~v~~~G~ 236 (375)
..|.++++.+|.++.||-
T Consensus 233 SGcq~~vtpqg~i~vyGG 250 (521)
T KOG1230|consen 233 SGCQFSVTPQGGIVVYGG 250 (521)
T ss_pred CcceEEecCCCcEEEEcc
Confidence 457888998999999985
No 111
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=23.74 E-value=5.6e+02 Score=23.28 Aligned_cols=109 Identities=14% Similarity=0.054 Sum_probs=63.7
Q ss_pred CEEEEecCCceEEEEEcCCcEEEeeCCCCCcccCCCCCCceecCEEccccCCcCeEEEEccCCeEEEEEcCCCEEEEeCC
Q 017198 51 HVVQVSASENHAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGLNFTGFLTIRGHVHTCGSN 130 (375)
Q Consensus 51 ~i~~i~~g~~~~~~lt~~g~vy~~G~n~~gqlg~~~~~~~~~~p~~i~~~~~~~i~~v~~g~~~~~~lt~~g~v~~~G~n 130 (375)
.|+.+++.+-+.+==..|-++..+-....-|+|.-.......+..... -....+|.+.-.+||++-+|-..
T Consensus 45 sitavAVs~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~---------~~~S~shLlS~sdDG~i~iw~~~ 115 (362)
T KOG0294|consen 45 SITALAVSGPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFY---------PPLSKSHLLSGSDDGHIIIWRVG 115 (362)
T ss_pred ceeEEEecceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEec---------CCcchhheeeecCCCcEEEEEcC
Confidence 788888887777666677777777666666665433221111110000 01122377888899999999655
Q ss_pred CCCcccCCCCCCCCcceeecCCCC-CCCEEEEEeCCCeEEEE--ECCCcEEEEeC
Q 017198 131 THGQLGHGDTLDRPTPKSIAPLEE-VGSVVQIAAGPSYMLAV--TGNGVVYSFGS 182 (375)
Q Consensus 131 ~~g~lg~~~~~~~~~p~~~~~~~~-~~~i~~i~~g~~~~~~l--t~~g~v~~~G~ 182 (375)
.+-.+ ..+.. ..+|.+|++...--+|| ..|+.+-.|-.
T Consensus 116 ~W~~~--------------~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNL 156 (362)
T KOG0294|consen 116 SWELL--------------KSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNL 156 (362)
T ss_pred CeEEe--------------eeecccccccceeEecCCCceEEEEcCCceeeeehh
Confidence 54222 22211 14688888876665555 45667777743
No 112
>PF13938 DUF4213: Domain of unknown function (DUF4213); PDB: 3NPG_A 3L5O_B.
Probab=23.06 E-value=1e+02 Score=21.66 Aligned_cols=23 Identities=22% Similarity=0.343 Sum_probs=19.0
Q ss_pred cCCcCeEEEEccCCeEEEEEcCC
Q 017198 100 LKGVPCKQVTAGLNFTGFLTIRG 122 (375)
Q Consensus 100 ~~~~~i~~v~~g~~~~~~lt~~g 122 (375)
.++.+|+++..|...+++..++|
T Consensus 9 ~~~~~V~~~~iG~~~t~V~~~~G 31 (87)
T PF13938_consen 9 APDIRVEDVCIGLHWTAVELSDG 31 (87)
T ss_dssp CGC-EEEEEEEBSSEEEEEETT-
T ss_pred CCCCEEEEEEEcCCEEEEEeCCC
Confidence 44778999999999999999998
No 113
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=23.00 E-value=1.1e+02 Score=17.48 Aligned_cols=20 Identities=5% Similarity=0.149 Sum_probs=14.5
Q ss_pred ecCCceEEEEEcCCcEEEee
Q 017198 56 SASENHAAFVLQSGQVFTCG 75 (375)
Q Consensus 56 ~~g~~~~~~lt~~g~vy~~G 75 (375)
+......++-+.||+||+.-
T Consensus 18 ~v~~g~vyv~~~dg~l~ald 37 (40)
T PF13570_consen 18 AVAGGRVYVGTGDGNLYALD 37 (40)
T ss_dssp EECTSEEEEE-TTSEEEEEE
T ss_pred EEECCEEEEEcCCCEEEEEe
Confidence 44567888888899998874
No 114
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=22.74 E-value=6.9e+02 Score=24.03 Aligned_cols=79 Identities=6% Similarity=-0.072 Sum_probs=41.6
Q ss_pred eEEEEecCCcEEEEEcCCcEEEEeCCCCCCCCCCCCCCCCceecceEcCccCCCcEEEEEeCCCceEEEE--cCCCEEEe
Q 017198 264 AVQVCARKRKTFVLVDTGSVYGFGWMGFGSLGFPDRGVSDKVLRPRILDSLRAHHVSQISTGLYHTVVVT--DRGRLFGF 341 (375)
Q Consensus 264 i~~i~~g~~~~~~l~~~g~vy~~G~n~~gqlg~~~~~~~~~~~~p~~~~~~~~~~i~~i~~G~~h~~~l~--~~g~v~~w 341 (375)
...+.......++-+-++.++++.-.....+.. .....-..+.. .-.++.+...-.++.+ .+|+||.|
T Consensus 390 ~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nk------kK~feGh~vaG----ys~~v~fSpDG~~l~SGdsdG~v~~w 459 (503)
T KOG0282|consen 390 CLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNK------KKRFEGHSVAG----YSCQVDFSPDGRTLCSGDSDGKVNFW 459 (503)
T ss_pred ceecCCCCCeehhhccCceEEEEecccccccCH------hhhhcceeccC----ceeeEEEcCCCCeEEeecCCccEEEe
Confidence 334444555666777778888776443333321 11111122221 3344555444444444 57899999
Q ss_pred eCCCCCCCCcC
Q 017198 342 GDNERAQLGHD 352 (375)
Q Consensus 342 G~n~~gqlG~g 352 (375)
+++..--+...
T Consensus 460 dwkt~kl~~~l 470 (503)
T KOG0282|consen 460 DWKTTKLVSKL 470 (503)
T ss_pred echhhhhhhcc
Confidence 99876544443
No 115
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=22.63 E-value=3.6e+02 Score=24.73 Aligned_cols=64 Identities=13% Similarity=0.131 Sum_probs=34.1
Q ss_pred CCCeEEEEECCCcEEEEeCCCCCccCCCCCCCccCceeeeccccCCccEE-E--EEcCCCeEEEEeCCCCEEEEeC
Q 017198 164 GPSYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVV-R--VSAGDEHVVALDSSGYVYTWGK 236 (375)
Q Consensus 164 g~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~p~~i~~~~~~~~~i~-~--i~~g~~~~~~lt~~g~v~~~G~ 236 (375)
+..-...+..||.+........|+.. ..... .|...+..+. . ......+.++++-+|+||..-.
T Consensus 146 ~~~~F~~lC~DGsl~~v~Ld~~Gk~~-------~~~t~--~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dl 212 (342)
T PF06433_consen 146 GNRGFSMLCGDGSLLTVTLDADGKEA-------QKSTK--VFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADL 212 (342)
T ss_dssp ETTEEEEEETTSCEEEEEETSTSSEE-------EEEEE--ESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEE
T ss_pred CCCceEEEecCCceEEEEECCCCCEe-------Eeecc--ccCCCCcccccccceECCCCeEEEEecCCEEEEEec
Confidence 33444566778877777665555432 11111 1111111221 1 2245668888999999998653
No 116
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=22.43 E-value=8.7e+02 Score=25.05 Aligned_cols=150 Identities=17% Similarity=0.161 Sum_probs=0.0
Q ss_pred EEeCC---CeEEEEECCCcEEEEeCCCCCccCCCCCCCccCceeeeccccCCccEEEEEcCCCeEEEEeCCCCEEEEeCC
Q 017198 161 IAAGP---SYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGDEHVVALDSSGYVYTWGKG 237 (375)
Q Consensus 161 i~~g~---~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~p~~i~~~~~~~~~i~~i~~g~~~~~~lt~~g~v~~~G~n 237 (375)
|..|+ ..-++++++|.++++|. ......+. -..++....+|....--.+-.++++.+|+++.--.+
T Consensus 87 I~mgWs~~eeLI~v~k~g~v~Vy~~----------~ge~ie~~-svg~e~~~~~I~ec~~f~~GVavlt~~g~v~~i~~~ 155 (829)
T KOG2280|consen 87 IGMGWSDDEELICVQKDGTVHVYGL----------LGEFIESN-SVGFESQMSDIVECRFFHNGVAVLTVSGQVILINGV 155 (829)
T ss_pred eeecccCCceEEEEeccceEEEeec----------chhhhccc-ccccccccCceeEEEEecCceEEEecCCcEEEEcCC
Q ss_pred CCCCCCCCCCCCcccCe-eccCCCCCceEEEEecCCcEEEEEcCCcEEEEeCCCCCCCCCCCCCCCCceecceEcCccCC
Q 017198 238 YCGALGHGDEIDKTLPE-PLSSLKSHLAVQVCARKRKTFVLVDTGSVYGFGWMGFGSLGFPDRGVSDKVLRPRILDSLRA 316 (375)
Q Consensus 238 ~~gqlg~~~~~~~~~p~-~i~~~~~~~i~~i~~g~~~~~~l~~~g~vy~~G~n~~gqlg~~~~~~~~~~~~p~~~~~~~~ 316 (375)
+ .......|. +-..+......-+.-+..-++++.-+-.|.--+ ........++..+... +
T Consensus 156 ~-------~~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~~~~-----------~q~~~~~~q~~~~~~~-~ 216 (829)
T KOG2280|consen 156 E-------EPKLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVGLHI-----------CQVEESRVQLHALSWP-N 216 (829)
T ss_pred C-------cchhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhhhcc-----------cceecccccccccCCC-C
Q ss_pred CcEEEEEeC--CCceEEEEcCCCEEE
Q 017198 317 HHVSQISTG--LYHTVVVTDRGRLFG 340 (375)
Q Consensus 317 ~~i~~i~~G--~~h~~~l~~~g~v~~ 340 (375)
..+++|+.. ..|.+..++.|++|.
T Consensus 217 ~~~~ki~VS~n~~~laLyt~~G~i~~ 242 (829)
T KOG2280|consen 217 SSVVKISVSPNRRFLALYTETGKIWV 242 (829)
T ss_pred ceEEEEEEcCCcceEEEEecCCcEEE
No 117
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=21.99 E-value=6.3e+02 Score=23.26 Aligned_cols=167 Identities=12% Similarity=0.110 Sum_probs=74.7
Q ss_pred eeecCCeeEEE-eCCcEEEEeCCCCCccCCCCCCCee--------eeeeeecCCCCCCEEEEecCCceEEEEEcCCc-EE
Q 017198 3 ITTGRYHTLLI-SNSSVFSCGSSLCGVLGHGPETTQC--------VSFTRINFPSAAHVVQVSASENHAAFVLQSGQ-VF 72 (375)
Q Consensus 3 i~~G~~~~~~l-~~g~l~~wG~n~~g~Lg~~~~~~~~--------~~~~~~~~~~~~~i~~i~~g~~~~~~lt~~g~-vy 72 (375)
|-+|...-+++ .|++-+.-=+..+-++.+|.-++.. .....+.+|.+.+. .+.-..+.+.|+.||+ +|
T Consensus 33 i~~g~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~--~~~~~~~~~~ls~dgk~~~ 110 (342)
T PF06433_consen 33 IDTGFLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRA--QVVPYKNMFALSADGKFLY 110 (342)
T ss_dssp EEEESSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B----BS--GGGEEE-TTSSEEE
T ss_pred eecccCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchh--eecccccceEEccCCcEEE
Confidence 55677777777 6666444333333344443322211 11223444553233 2334677788888877 77
Q ss_pred EeeCCCCCcccCCCCCCceecCEEccccCCcCeEEEEccCCeEEEEEcCCCEEEEeCCCCCcccCCCCCCCCcceeecCC
Q 017198 73 TCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGLNFTGFLTIRGHVHTCGSNTHGQLGHGDTLDRPTPKSIAPL 152 (375)
Q Consensus 73 ~~G~n~~gqlg~~~~~~~~~~p~~i~~~~~~~i~~v~~g~~~~~~lt~~g~v~~~G~n~~g~lg~~~~~~~~~p~~~~~~ 152 (375)
++-....-..+.-+... ...-..+..+ +. .--.-.+......+-.||.+...-.+..|+.-. ....+...
T Consensus 111 V~N~TPa~SVtVVDl~~-~kvv~ei~~P-GC-~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~-------~~t~~F~~ 180 (342)
T PF06433_consen 111 VQNFTPATSVTVVDLAA-KKVVGEIDTP-GC-WLIYPSGNRGFSMLCGDGSLLTVTLDADGKEAQ-------KSTKVFDP 180 (342)
T ss_dssp EEEESSSEEEEEEETTT-TEEEEEEEGT-SE-EEEEEEETTEEEEEETTSCEEEEEETSTSSEEE-------EEEEESST
T ss_pred EEccCCCCeEEEEECCC-CceeeeecCC-CE-EEEEecCCCceEEEecCCceEEEEECCCCCEeE-------eeccccCC
Confidence 77444322221111110 0001111111 11 111123444556777788887776666555421 11112221
Q ss_pred CCCCCEE-E--EEeCCCeEEEEECCCcEEEEeC
Q 017198 153 EEVGSVV-Q--IAAGPSYMLAVTGNGVVYSFGS 182 (375)
Q Consensus 153 ~~~~~i~-~--i~~g~~~~~~lt~~g~v~~~G~ 182 (375)
.. +.+. . ......+.++++-+|.||..-.
T Consensus 181 ~~-dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dl 212 (342)
T PF06433_consen 181 DD-DPLFEHPAYSRDGGRLYFVSYEGNVYSADL 212 (342)
T ss_dssp TT-S-B-S--EEETTTTEEEEEBTTSEEEEEEE
T ss_pred CC-cccccccceECCCCeEEEEecCCEEEEEec
Confidence 11 2222 1 1234567788999999998654
No 118
>PRK02529 petN cytochrome b6-f complex subunit PetN; Provisional
Probab=21.94 E-value=92 Score=17.33 Aligned_cols=14 Identities=14% Similarity=0.363 Sum_probs=10.3
Q ss_pred CEEEeeCCCCCCCC
Q 017198 337 RLFGFGDNERAQLG 350 (375)
Q Consensus 337 ~v~~wG~n~~gqlG 350 (375)
.+-.||+|..|.+.
T Consensus 19 slVVWGRnG~g~~~ 32 (33)
T PRK02529 19 AMVVWGRNGDGSID 32 (33)
T ss_pred EEEEEecCCccccC
Confidence 36789999877654
No 119
>PF11399 DUF3192: Protein of unknown function (DUF3192); InterPro: IPR021534 Some members in this family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=21.53 E-value=76 Score=23.26 Aligned_cols=23 Identities=17% Similarity=0.345 Sum_probs=18.2
Q ss_pred CCcEEEEEcCCcEEEEeCCCCCC
Q 017198 271 KRKTFVLVDTGSVYGFGWMGFGS 293 (375)
Q Consensus 271 ~~~~~~l~~~g~vy~~G~n~~gq 293 (375)
+..+-+|..+++|..||...+.+
T Consensus 79 DECTplvF~n~~LvgWG~~ay~~ 101 (102)
T PF11399_consen 79 DECTPLVFKNGKLVGWGDDAYSQ 101 (102)
T ss_pred CceEEEEEECCEEEEEcHHhhhc
Confidence 56677888999999999765543
No 120
>PHA00684 hypothetical protein
Probab=21.50 E-value=63 Score=24.53 Aligned_cols=19 Identities=37% Similarity=0.688 Sum_probs=14.6
Q ss_pred cEEEEeCCCCCccCCCCCC
Q 017198 17 SVFSCGSSLCGVLGHGPET 35 (375)
Q Consensus 17 ~l~~wG~n~~g~Lg~~~~~ 35 (375)
+||++|+|..|+.|.+...
T Consensus 1 eIFVFGSNlaG~Hg~GAA~ 19 (128)
T PHA00684 1 MIFVFGSNLAGAHGAGAAA 19 (128)
T ss_pred CeEEecCCccccccchHHH
Confidence 5899999998887666443
No 121
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=21.49 E-value=9.1e+02 Score=24.94 Aligned_cols=122 Identities=12% Similarity=0.059 Sum_probs=57.5
Q ss_pred eEEEEEcCCcEEEeeCCCCCcccCCCCC------Cc--eecCEEcc-ccCCcCeEEEEccCCeE-EEEEcCCCEEE----
Q 017198 61 HAAFVLQSGQVFTCGDNSSFCCGHRDTN------RP--IFRPRLVE-ALKGVPCKQVTAGLNFT-GFLTIRGHVHT---- 126 (375)
Q Consensus 61 ~~~~lt~~g~vy~~G~n~~gqlg~~~~~------~~--~~~p~~i~-~~~~~~i~~v~~g~~~~-~~lt~~g~v~~---- 126 (375)
..++...|+.||+|-.++...+...-.. .. ....+.+. ......|.+|....... ++|.-.-.|++
T Consensus 34 rNLl~~~d~~L~vWd~~e~~l~~~nlr~~~~~~~~~~~~~~q~L~~~~~~~f~v~~i~~n~~g~~lal~G~~~v~V~~LP 113 (717)
T PF10168_consen 34 RNLLACRDGDLFVWDSSECCLLTVNLRSLESDAEGPAKSSYQKLLPSNPPLFEVHQISLNPTGSLLALVGPRGVVVLELP 113 (717)
T ss_pred eeeEEEeCCEEEEEECCCCEEEEEeeccccccccCccccCcceeecCCCCceeEEEEEECCCCCEEEEEcCCcEEEEEec
Confidence 4555556789999987775443321110 00 01111111 12234566766543332 34433333433
Q ss_pred --EeCCCCCcccCCCCCCCCcceeecCC--CCCCCEEEEEeC-----CCeEEEEECCCcEEEEeC
Q 017198 127 --CGSNTHGQLGHGDTLDRPTPKSIAPL--EEVGSVVQIAAG-----PSYMLAVTGNGVVYSFGS 182 (375)
Q Consensus 127 --~G~n~~g~lg~~~~~~~~~p~~~~~~--~~~~~i~~i~~g-----~~~~~~lt~~g~v~~~G~ 182 (375)
||.+..-+-|......+..|+--..+ .....|.++.=. ..|.++||+|+.+..+-.
T Consensus 114 ~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~ 178 (717)
T PF10168_consen 114 RRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSHLVVLTSDNTLRLYDI 178 (717)
T ss_pred cccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCeEEEEecCCEEEEEec
Confidence 55543322222222222222221111 122467777633 589999999998877643
No 122
>PF06204 CBM_X: Putative carbohydrate binding domain ; InterPro: IPR009342 This domain is conserved in enzymes that have carbohydrates as substrate, and may be a carbohydrate-binding domain.; PDB: 3ACT_B 2CQT_A 3QFY_B 3QFZ_A 2CQS_A 3QG0_B 3AFJ_A 3ACS_A 1V7V_A 1V7X_A ....
Probab=21.42 E-value=2.6e+02 Score=18.62 Aligned_cols=28 Identities=25% Similarity=0.298 Sum_probs=22.1
Q ss_pred CEEEEecCCceEEEEEcCCcEEEeeCCC
Q 017198 51 HVVQVSASENHAAFVLQSGQVFTCGDNS 78 (375)
Q Consensus 51 ~i~~i~~g~~~~~~lt~~g~vy~~G~n~ 78 (375)
+.+.+-+...+.++|++.|--|+|-.+.
T Consensus 26 P~~n~LsNg~y~~mvt~~G~GySw~~~~ 53 (66)
T PF06204_consen 26 PWVNVLSNGSYGVMVTNSGSGYSWAKNS 53 (66)
T ss_dssp --EEEE-SSSEEEEEETTSBEEEEES-T
T ss_pred CEEEEeeCCcEEEEEcCCCceeeccccc
Confidence 7888889999999999999999997665
No 123
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=20.97 E-value=3.7e+02 Score=22.96 Aligned_cols=68 Identities=19% Similarity=0.272 Sum_probs=0.0
Q ss_pred EEEEEcCCcEEEEeCC-------CCCCCCCCCCCCCCceecceEcCccCCCcEEEEEeCCCceEEEEcCCCEEEeeCCCC
Q 017198 274 TFVLVDTGSVYGFGWM-------GFGSLGFPDRGVSDKVLRPRILDSLRAHHVSQISTGLYHTVVVTDRGRLFGFGDNER 346 (375)
Q Consensus 274 ~~~l~~~g~vy~~G~n-------~~gqlg~~~~~~~~~~~~p~~~~~~~~~~i~~i~~G~~h~~~l~~~g~v~~wG~n~~ 346 (375)
+++.--.|.+|.-|+| .|-.+-...........+|..+-.-....--.|-| .+-..+|++.+-|+|++
T Consensus 37 av~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc-----~~ws~~geliatgsndk 111 (350)
T KOG0641|consen 37 AVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYC-----TAWSPCGELIATGSNDK 111 (350)
T ss_pred eEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEE-----EEecCccCeEEecCCCc
No 124
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=20.87 E-value=7.6e+02 Score=23.78 Aligned_cols=31 Identities=16% Similarity=0.070 Sum_probs=18.7
Q ss_pred EEEecCCcEEEE--EcCCcEEEEeCCCCCCCCC
Q 017198 266 QVCARKRKTFVL--VDTGSVYGFGWMGFGSLGF 296 (375)
Q Consensus 266 ~i~~g~~~~~~l--~~~g~vy~~G~n~~gqlg~ 296 (375)
++.+..+-.++. +.+|++|.|+.+..-.+..
T Consensus 437 ~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~ 469 (503)
T KOG0282|consen 437 QVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSK 469 (503)
T ss_pred eEEEcCCCCeEEeecCCccEEEeechhhhhhhc
Confidence 344444433444 3568999999886655543
Done!