Query 017198
Match_columns 375
No_of_seqs 177 out of 1786
Neff 10.2
Searched_HMMs 29240
Date Mon Mar 25 10:32:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017198.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017198hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4d9s_A UVB-resistance protein 100.0 3.7E-75 1.3E-79 544.9 43.4 357 1-365 19-377 (406)
2 3kci_A Probable E3 ubiquitin-p 100.0 2.9E-73 1E-77 529.4 34.1 364 3-374 6-374 (389)
3 1a12_A RCC1, regulator of chro 100.0 1.6E-70 5.4E-75 515.4 38.7 354 2-366 12-386 (413)
4 3mvd_K Regulator of chromosome 100.0 5E-70 1.7E-74 513.9 39.6 350 1-365 27-394 (423)
5 3of7_A Regulator of chromosome 100.0 1.6E-68 5.6E-73 509.2 36.4 357 2-366 14-427 (473)
6 3kci_A Probable E3 ubiquitin-p 100.0 3.3E-66 1.1E-70 481.9 35.4 328 1-336 56-388 (389)
7 4d9s_A UVB-resistance protein 100.0 1.2E-64 4.2E-69 473.7 38.7 318 50-374 16-334 (406)
8 1a12_A RCC1, regulator of chro 100.0 2.1E-64 7.3E-69 473.8 37.9 329 1-338 62-412 (413)
9 3mvd_K Regulator of chromosome 100.0 6.3E-62 2.1E-66 458.7 40.3 322 1-337 78-420 (423)
10 3of7_A Regulator of chromosome 100.0 1.8E-61 6E-66 460.8 36.4 324 1-334 70-449 (473)
11 3qhy_B Beta-lactamase inhibito 100.0 9.8E-53 3.4E-57 372.7 28.0 252 16-352 2-253 (282)
12 3qhy_B Beta-lactamase inhibito 100.0 2.1E-52 7.2E-57 370.6 29.1 250 1-339 27-276 (282)
13 1p22_A F-BOX/WD-repeat protein 97.2 0.14 4.6E-06 47.2 31.5 240 50-345 174-414 (435)
14 4gbf_A Phikz131; 7-bladed beta 96.8 0.0029 1E-07 52.5 6.8 66 3-82 314-380 (400)
15 1p22_A F-BOX/WD-repeat protein 96.8 0.32 1.1E-05 44.6 31.1 228 51-342 135-362 (435)
16 4gbf_A Phikz131; 7-bladed beta 96.4 0.006 2E-07 50.7 6.3 85 262-362 309-396 (400)
17 2ovr_B FBW7, F-BOX/WD repeat p 96.4 0.57 2E-05 42.9 34.6 228 51-344 161-390 (445)
18 1k3i_A Galactose oxidase precu 96.1 1.2 4E-05 43.6 28.3 110 9-129 190-305 (656)
19 1k3i_A Galactose oxidase precu 95.9 1.1 3.9E-05 43.6 20.9 72 272-348 458-534 (656)
20 1gxr_A ESG1, transducin-like e 95.7 0.94 3.2E-05 39.2 30.1 275 5-345 9-296 (337)
21 3k26_A Polycomb protein EED; W 95.4 1.2 4.3E-05 38.9 20.8 220 50-288 116-364 (366)
22 2ovr_B FBW7, F-BOX/WD repeat p 95.0 2.1 7.1E-05 39.1 35.3 187 51-289 201-390 (445)
23 3k26_A Polycomb protein EED; W 94.8 1.9 6.3E-05 37.7 28.6 293 7-342 34-363 (366)
24 2zwa_A Leucine carboxyl methyl 94.7 3 0.0001 41.0 19.7 17 272-288 657-673 (695)
25 4aez_A CDC20, WD repeat-contai 94.6 2.4 8.3E-05 38.1 31.6 140 7-183 103-247 (401)
26 2zwa_A Leucine carboxyl methyl 94.4 4.2 0.00014 40.0 21.4 64 112-183 441-509 (695)
27 3odt_A Protein DOA1; ubiquitin 94.0 2.6 8.7E-05 35.9 25.5 184 51-289 106-295 (313)
28 1gxr_A ESG1, transducin-like e 93.4 3.4 0.00012 35.5 29.6 224 50-341 98-333 (337)
29 3jrp_A Fusion protein of prote 93.2 4 0.00014 35.7 27.7 201 50-289 56-286 (379)
30 3zwl_B Eukaryotic translation 92.9 4.3 0.00015 35.3 30.1 159 51-236 76-247 (369)
31 3no0_A DNA gyrase subunit A; D 92.8 4.1 0.00014 34.9 21.2 226 61-340 3-239 (276)
32 2pm9_A Protein WEB1, protein t 91.8 6.7 0.00023 34.9 24.9 200 50-288 68-292 (416)
33 4a11_B DNA excision repair pro 91.8 6.5 0.00022 34.7 29.7 208 50-290 44-276 (408)
34 1pgu_A Actin interacting prote 91.7 8.9 0.0003 36.2 30.0 149 156-342 447-611 (615)
35 3mmy_A MRNA export factor; mRN 91.7 6.2 0.00021 34.2 25.1 190 50-289 40-246 (368)
36 3odt_A Protein DOA1; ubiquitin 91.2 6.2 0.00021 33.4 31.9 227 51-344 61-295 (313)
37 4aez_A CDC20, WD repeat-contai 91.0 8.3 0.00028 34.4 29.2 145 55-237 99-247 (401)
38 3sfz_A APAF-1, apoptotic pepti 90.5 19 0.00065 37.7 24.9 230 51-342 1005-1246(1249)
39 4a11_B DNA excision repair pro 90.4 8.9 0.0003 33.8 32.5 249 51-346 101-366 (408)
40 1sq9_A Antiviral protein SKI8; 89.2 11 0.00038 33.2 24.7 122 50-184 17-157 (397)
41 3no0_A DNA gyrase subunit A; D 89.2 9.6 0.00033 32.5 20.8 215 51-296 25-252 (276)
42 3vl1_A 26S proteasome regulato 88.9 12 0.00042 33.3 31.4 100 58-183 108-211 (420)
43 3i2n_A WD repeat-containing pr 88.7 11 0.00038 32.5 29.1 196 50-289 66-290 (357)
44 3ii7_A Kelch-like protein 7; p 88.6 11 0.00037 32.3 13.9 18 8-25 48-65 (306)
45 1suu_A DNA gyrase subunit A; t 88.6 12 0.0004 32.7 23.8 262 8-291 9-284 (312)
46 1r5m_A SIR4-interacting protei 88.4 13 0.00044 32.9 28.3 198 51-289 151-360 (425)
47 1pgu_A Actin interacting prote 88.1 18 0.0006 34.1 28.3 229 58-345 308-572 (615)
48 3jrp_A Fusion protein of prote 87.4 14 0.00047 32.1 27.8 240 51-344 13-286 (379)
49 3mmy_A MRNA export factor; mRN 87.3 14 0.00046 32.0 30.1 149 51-237 88-246 (368)
50 4g56_B MGC81050 protein; prote 87.3 15 0.0005 32.3 30.6 186 104-343 141-341 (357)
51 3v7d_B Cell division control p 86.8 18 0.00061 32.8 32.8 200 51-289 205-420 (464)
52 4g56_B MGC81050 protein; prote 86.8 16 0.00054 32.1 27.1 188 51-289 141-342 (357)
53 1yfq_A Cell cycle arrest prote 86.6 14 0.00049 31.5 23.7 204 51-288 58-280 (342)
54 1zgk_A Kelch-like ECH-associat 86.1 8.8 0.0003 33.0 11.7 17 166-183 161-177 (308)
55 3uc1_A DNA gyrase subunit A; D 85.5 18 0.00062 31.7 25.0 215 107-343 48-277 (327)
56 2xn4_A Kelch-like protein 2; s 85.3 14 0.00049 31.4 12.6 17 8-24 54-70 (302)
57 2pm9_A Protein WEB1, protein t 85.2 19 0.00067 31.8 22.1 119 104-236 69-195 (416)
58 1wp5_A Topoisomerase IV; broke 85.2 19 0.00064 31.5 25.3 226 55-296 46-283 (323)
59 4gga_A P55CDC, cell division c 85.1 21 0.00072 32.0 29.7 139 7-182 115-259 (420)
60 3v7d_B Cell division control p 84.2 24 0.00082 31.9 35.1 240 51-344 164-420 (464)
61 2xyi_A Probable histone-bindin 84.1 24 0.00081 31.8 25.5 198 61-288 196-408 (430)
62 3uc1_A DNA gyrase subunit A; D 84.1 21 0.00072 31.2 27.0 224 55-296 49-285 (327)
63 1r5m_A SIR4-interacting protei 83.8 22 0.00076 31.3 24.8 238 51-343 110-359 (425)
64 3jro_A Fusion protein of prote 83.5 36 0.0012 33.5 24.4 197 51-289 11-237 (753)
65 3mkq_A Coatomer beta'-subunit; 82.9 38 0.0013 33.3 27.1 191 51-289 57-258 (814)
66 1yfq_A Cell cycle arrest prote 82.9 21 0.00073 30.4 27.5 203 51-290 13-225 (342)
67 1sq9_A Antiviral protein SKI8; 82.6 24 0.00084 30.9 28.6 236 14-289 34-321 (397)
68 1xip_A Nucleoporin NUP159; bet 82.4 21 0.00073 32.1 12.7 141 60-234 40-187 (388)
69 3mkq_A Coatomer beta'-subunit; 81.9 41 0.0014 33.0 26.5 229 51-344 15-258 (814)
70 1zgk_A Kelch-like ECH-associat 81.7 24 0.00081 30.1 12.9 17 8-24 63-79 (308)
71 4ggc_A P55CDC, cell division c 81.1 24 0.00081 29.7 27.1 137 9-182 37-179 (318)
72 2vpj_A Kelch-like protein 12; 80.6 21 0.00073 30.2 11.8 18 165-183 104-121 (301)
73 3l6v_A GYRA, DNA gyrase subuni 80.5 32 0.0011 30.7 27.2 236 43-296 39-322 (370)
74 3f3f_A Nucleoporin SEH1; struc 80.4 26 0.00087 29.7 27.9 172 50-237 58-248 (351)
75 4gqb_B Methylosome protein 50; 80.2 30 0.001 30.2 29.9 270 10-342 35-328 (344)
76 2vpj_A Kelch-like protein 12; 79.4 28 0.00095 29.5 15.0 18 8-25 55-72 (301)
77 3jro_A Fusion protein of prote 79.3 51 0.0017 32.4 26.7 201 50-289 54-284 (753)
78 3zwl_B Eukaryotic translation 79.1 30 0.001 29.7 25.3 199 51-288 34-247 (369)
79 3fvz_A Peptidyl-glycine alpha- 78.8 31 0.0011 29.7 23.2 23 56-78 22-44 (329)
80 1xip_A Nucleoporin NUP159; bet 78.3 22 0.00076 32.0 11.4 98 52-180 90-187 (388)
81 1zvt_A Topoisomerase IV subuni 77.7 30 0.001 29.0 11.7 134 46-190 29-169 (256)
82 3vl1_A 26S proteasome regulato 76.4 40 0.0014 29.7 31.8 194 50-289 140-364 (420)
83 2aq5_A Coronin-1A; WD40 repeat 76.2 41 0.0014 29.7 28.6 152 55-236 40-205 (402)
84 2woz_A Kelch repeat and BTB do 74.9 17 0.00057 31.3 9.5 17 114-130 49-65 (318)
85 1q7f_A NHL, brain tumor CG1071 73.8 38 0.0013 28.1 21.6 14 274-287 211-224 (286)
86 1erj_A Transcriptional repress 73.1 49 0.0017 29.2 27.1 203 52-288 126-339 (393)
87 2xyi_A Probable histone-bindin 72.7 53 0.0018 29.4 21.7 165 50-236 232-408 (430)
88 2aq5_A Coronin-1A; WD40 repeat 71.6 53 0.0018 28.9 23.9 154 108-288 40-205 (402)
89 1suu_A DNA gyrase subunit A; t 71.5 50 0.0017 28.6 25.2 217 3-239 54-284 (312)
90 3gre_A Serine/threonine-protei 69.7 61 0.0021 28.8 21.3 157 50-237 112-291 (437)
91 3l6v_A GYRA, DNA gyrase subuni 69.7 61 0.0021 28.9 25.2 222 4-244 54-322 (370)
92 3ii7_A Kelch-like protein 7; p 69.6 20 0.0007 30.4 8.7 17 8-24 94-110 (306)
93 3gre_A Serine/threonine-protei 69.4 62 0.0021 28.8 16.8 110 51-184 170-292 (437)
94 1zi0_A DNA gyrase subunit A; b 68.6 57 0.0019 28.1 28.1 232 46-295 38-282 (307)
95 3p6j_A De novo designed beta-t 68.4 36 0.0012 25.7 12.0 106 156-285 30-138 (142)
96 3i2n_A WD repeat-containing pr 68.1 56 0.0019 27.8 25.0 145 59-237 129-290 (357)
97 4asc_A Kelch repeat and BTB do 67.1 58 0.002 27.7 16.4 17 7-23 36-53 (315)
98 1k8k_C P40, ARP2/3 complex 41 66.9 61 0.0021 27.8 29.1 207 51-289 54-273 (372)
99 1rwi_B Serine/threonine-protei 66.2 52 0.0018 26.8 17.8 16 7-22 25-41 (270)
100 2ymu_A WD-40 repeat protein; u 65.7 86 0.0029 29.1 29.6 181 51-287 346-536 (577)
101 3no2_A Uncharacterized protein 65.1 61 0.0021 27.1 24.8 164 156-350 88-266 (276)
102 1q7f_A NHL, brain tumor CG1071 64.1 61 0.0021 26.8 24.3 16 9-24 33-49 (286)
103 1wp5_A Topoisomerase IV; broke 63.9 73 0.0025 27.7 25.3 264 59-351 5-283 (323)
104 3lrv_A PRE-mRNA-splicing facto 62.9 73 0.0025 27.3 19.3 113 49-184 125-244 (343)
105 3vu4_A KMHSV2; beta-propeller 62.7 77 0.0026 27.5 23.5 158 156-344 101-270 (355)
106 2xn4_A Kelch-like protein 2; s 60.4 76 0.0026 26.6 12.1 17 8-24 101-117 (302)
107 1zvu_A Topoisomerase IV subuni 59.6 1.3E+02 0.0045 29.3 12.5 123 56-189 511-638 (716)
108 4asc_A Kelch repeat and BTB do 55.6 45 0.0015 28.4 8.3 17 8-24 141-157 (315)
109 3p6j_A De novo designed beta-t 54.8 65 0.0022 24.2 12.3 110 100-234 27-139 (142)
110 4gga_A P55CDC, cell division c 54.2 1.2E+02 0.004 26.9 22.2 100 112-236 115-216 (420)
111 1zvt_A Topoisomerase IV subuni 54.2 95 0.0032 25.9 15.9 158 61-244 4-169 (256)
112 4ery_A WD repeat-containing pr 53.3 99 0.0034 25.8 30.5 147 51-236 67-221 (312)
113 3ei3_B DNA damage-binding prot 51.6 1.2E+02 0.004 26.2 20.9 192 51-290 75-282 (383)
114 3sjl_D Methylamine dehydrogena 50.4 1.4E+02 0.0048 26.7 17.3 134 41-182 111-254 (386)
115 4gqb_B Methylosome protein 50; 50.4 1.2E+02 0.0042 26.1 26.1 185 51-288 129-329 (344)
116 4aow_A Guanine nucleotide-bind 47.6 1.2E+02 0.0042 25.3 30.8 188 51-288 88-284 (340)
117 1zi0_A DNA gyrase subunit A; b 47.5 1.3E+02 0.0046 25.7 28.6 258 60-345 4-277 (307)
118 2ynn_A Coatomer subunit beta'; 47.0 1.3E+02 0.0043 25.2 20.6 147 104-288 15-170 (304)
119 2uvk_A YJHT; unknown function, 46.7 45 0.0015 29.0 6.9 18 112-130 110-127 (357)
120 3no2_A Uncharacterized protein 45.6 1.3E+02 0.0045 25.0 20.7 14 8-21 39-53 (276)
121 4ery_A WD repeat-containing pr 43.4 1.4E+02 0.0048 24.8 25.9 187 51-288 25-221 (312)
122 3vu4_A KMHSV2; beta-propeller 41.9 1.7E+02 0.0057 25.2 22.8 235 9-289 23-270 (355)
123 1k8k_C P40, ARP2/3 complex 41 41.6 1.6E+02 0.0055 24.9 27.7 246 51-344 10-273 (372)
124 2woz_A Kelch repeat and BTB do 41.5 51 0.0018 28.1 6.4 17 8-24 102-118 (318)
125 3bws_A Protein LP49; two-domai 39.9 1.9E+02 0.0066 25.3 20.7 26 157-182 304-332 (433)
126 3sfz_A APAF-1, apoptotic pepti 39.2 3.4E+02 0.012 28.0 28.3 106 51-182 659-772 (1249)
127 1l0q_A Surface layer protein; 38.9 1.9E+02 0.0064 24.9 19.9 12 278-289 263-274 (391)
128 3ei3_B DNA damage-binding prot 38.7 1.9E+02 0.0064 24.9 28.5 150 50-237 119-281 (383)
129 4aow_A Guanine nucleotide-bind 36.5 1.9E+02 0.0063 24.1 26.0 66 156-236 216-284 (340)
130 1l0q_A Surface layer protein; 33.0 2.3E+02 0.008 24.2 25.8 50 14-77 10-62 (391)
131 1rwi_B Serine/threonine-protei 31.9 2E+02 0.0068 23.1 15.9 12 115-126 28-39 (270)
132 4e54_B DNA damage-binding prot 31.2 2.8E+02 0.0094 24.5 20.5 193 49-286 119-323 (435)
133 3sjl_D Methylamine dehydrogena 30.9 2.9E+02 0.0098 24.6 18.7 270 42-340 62-348 (386)
134 1zvu_A Topoisomerase IV subuni 30.1 4E+02 0.014 26.0 13.0 163 58-244 471-639 (716)
135 3q7m_A Lipoprotein YFGL, BAMB; 28.2 2.9E+02 0.0098 23.7 12.4 16 326-341 359-374 (376)
136 2qc5_A Streptogramin B lactona 27.9 2.4E+02 0.0083 22.8 24.4 18 7-24 21-39 (300)
137 2ymu_A WD-40 repeat protein; u 27.4 3.6E+02 0.012 24.6 30.4 181 51-287 264-454 (577)
138 2oaj_A Protein SNI1; WD40 repe 25.6 5.2E+02 0.018 25.9 21.3 105 51-183 19-128 (902)
139 3ow8_A WD repeat-containing pr 24.0 3.2E+02 0.011 22.9 29.7 225 51-341 82-317 (321)
140 2ynn_A Coatomer subunit beta'; 22.9 3.2E+02 0.011 22.5 28.5 229 51-344 15-258 (304)
141 1erj_A Transcriptional repress 22.1 3.8E+02 0.013 23.1 23.7 164 51-236 167-339 (393)
142 2oaj_A Protein SNI1; WD40 repe 21.5 6.2E+02 0.021 25.3 18.7 68 49-130 58-128 (902)
143 3bws_A Protein LP49; two-domai 21.5 4E+02 0.014 23.1 24.6 27 51-77 171-199 (433)
144 3hrp_A Uncharacterized protein 21.4 4.2E+02 0.015 23.4 22.0 16 9-24 134-150 (409)
145 3lrv_A PRE-mRNA-splicing facto 21.0 3.7E+02 0.013 22.6 21.3 111 156-289 126-243 (343)
No 1
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A
Probab=100.00 E-value=3.7e-75 Score=544.89 Aligned_cols=357 Identities=31% Similarity=0.490 Sum_probs=329.0
Q ss_pred CeeeecCCeeEEE-eCCcEEEEeCCCCCccCCCCCCCeeeeeeeecCCCCCCEEEEecCCceEEEEEcCC-cEEEeeCCC
Q 017198 1 MQITTGRYHTLLI-SNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSASENHAAFVLQSG-QVFTCGDNS 78 (375)
Q Consensus 1 v~i~~G~~~~~~l-~~g~l~~wG~n~~g~Lg~~~~~~~~~~~~~~~~~~~~~i~~i~~g~~~~~~lt~~g-~vy~~G~n~ 78 (375)
++|+||..|+++| ++++||+||.|.+||||.+.... ...|+++......+|++|+||..|+++|++++ +||+||.|.
T Consensus 19 ~~ia~G~~hs~al~~~g~v~~wG~n~~GqLG~g~~~~-~~~P~~v~~l~~~~i~~va~G~~ht~al~~~gg~v~~wG~n~ 97 (406)
T 4d9s_A 19 LIISAGASHSVALLSGDIVCSWGRGEDGQLGHGDAED-RPSPTQLSALDGHQIVSVTCGADHTVAYSQSGMEVYSWGWGD 97 (406)
T ss_dssp EEEEECSSEEEEEETTTEEEEEECCTTSTTCSSSCCC-EEEEEECGGGTTSCEEEEEECSSEEEEEETTTTEEEEEECCG
T ss_pred EEEecCCCeEEEEEeCCEEEEEeCCCCCCCCCCCccc-CcCCEEecccCCCCEEEEEeCcceEEEEECCCCEEEEEcCCC
Confidence 4799999999999 99999999999999999998877 56677776666669999999999999999986 999999999
Q ss_pred CCcccCCCCCCceecCEEccccCCcCeEEEEccCCeEEEEEcCCCEEEEeCCCCCcccCCCCCCCCcceeecCCCCCCCE
Q 017198 79 SFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGLNFTGFLTIRGHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSV 158 (375)
Q Consensus 79 ~gqlg~~~~~~~~~~p~~i~~~~~~~i~~v~~g~~~~~~lt~~g~v~~~G~n~~g~lg~~~~~~~~~p~~~~~~~~~~~i 158 (375)
+||||.+... ....|.++..+.+.+|++|+||..|+++|+++|+||+||.|.+||||.+.......|..+..+.. .+|
T Consensus 98 ~GqLG~g~~~-~~~~p~~v~~l~~~~i~~ia~G~~h~~alt~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~-~~i 175 (406)
T 4d9s_A 98 FGRLGHGNSS-DLFTPLPIKALHGIRIKQIACGDSHCLAVTMEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQAFEG-IRI 175 (406)
T ss_dssp GGTTCSSSCC-CEEEEEECGGGTTCCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSCCCEEEEEECGGGTT-CCE
T ss_pred CcCCCCCCCC-ccccceEecccCCCCEEEEEEChhheEEEcCCCcEEEeCCCCCccCCCCCCCCcccceEecccCC-CcE
Confidence 9999998874 47889999999999999999999999999999999999999999999998888888988887754 689
Q ss_pred EEEEeCCCeEEEEECCCcEEEEeCCCCCccCCCCCCCccCceeeeccccCCccEEEEEcCCCeEEEEeCCCCEEEEeCCC
Q 017198 159 VQIAAGPSYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGDEHVVALDSSGYVYTWGKGY 238 (375)
Q Consensus 159 ~~i~~g~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~p~~i~~~~~~~~~i~~i~~g~~~~~~lt~~g~v~~~G~n~ 238 (375)
++|+||.+|+++|+++|+||+||.|.++|||.+.......|+++..+. ..+|++|+||.+|+++|+++|+||+||.|.
T Consensus 176 ~~va~G~~hs~alt~~G~v~~wG~n~~GqlG~g~~~~~~~p~~v~~~~--~~~i~~va~G~~ht~~l~~~G~v~~wG~n~ 253 (406)
T 4d9s_A 176 KMVAAGAEHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTG--GEKMSMVACGWRHTISVSYSGALYTYGWSK 253 (406)
T ss_dssp EEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSSCCEEEEEECCCST--TCCEEEEEECSSEEEEEETTCCEEEEECCT
T ss_pred EEEecCCCeEEEEeCCCCEEEeeCCCCCCCCCCCCCCcCccEEecccC--CceEEEEEECCCcEEEEcCCCCEEEeeCCC
Confidence 999999999999999999999999999999999988888898887653 348999999999999999999999999999
Q ss_pred CCCCCCCCCCCcccCeeccCCCCCceEEEEecCCcEEEEEcCCcEEEEeCCCCCCCCCCCCCCCCceecceEcCccCCCc
Q 017198 239 CGALGHGDEIDKTLPEPLSSLKSHLAVQVCARKRKTFVLVDTGSVYGFGWMGFGSLGFPDRGVSDKVLRPRILDSLRAHH 318 (375)
Q Consensus 239 ~gqlg~~~~~~~~~p~~i~~~~~~~i~~i~~g~~~~~~l~~~g~vy~~G~n~~gqlg~~~~~~~~~~~~p~~~~~~~~~~ 318 (375)
+||||.++......|+++..+.+.+|++|+||.+|+++|+++|+||+||.|.++|||.+. ......|.+++.+...+
T Consensus 254 ~GqlG~g~~~~~~~p~~v~~~~~~~v~~i~~G~~hs~alt~~G~v~~wG~n~~GqLG~g~---~~~~~~p~~v~~~~~~~ 330 (406)
T 4d9s_A 254 YGQLGHGDLEDHLIPHKLEALSNSFISQISGGWRHTMALTSDGKLYGWGWNKFGQVGVGN---NLDQCSPVQVRFPDDQK 330 (406)
T ss_dssp TSTTCSSSCCCEEEEEECGGGTTSCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSS---SSCEEEEEEECCGGGCC
T ss_pred CCCCCCCCCcCccccEEecccCCCCEEEEEecCCEEEEEcCCCeEEEeeCCCCCCCCCCC---CCCCccCEEEeccCCCc
Confidence 999999999999999999998888999999999999999999999999999999999886 44567788888777789
Q ss_pred EEEEEeCCCceEEEEcCCCEEEeeCCCCCCCCcCCCCCcccceEEEe
Q 017198 319 VSQISTGLYHTVVVTDRGRLFGFGDNERAQLGHDTLRGCLEPTEIFI 365 (375)
Q Consensus 319 i~~i~~G~~h~~~l~~~g~v~~wG~n~~gqlG~g~~~~~~~p~~v~~ 365 (375)
|++|+||.+|+++|+++|+||+||+|.+||||+|+..+...|+.|..
T Consensus 331 v~~va~G~~hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~P~~v~~ 377 (406)
T 4d9s_A 331 VVQVSCGWRHTLAVTERNNVFAWGRGTNGQLGIGESVDRNFPKIIEA 377 (406)
T ss_dssp EEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSCCCEEEEEECGG
T ss_pred EEEEEeCCCeEEEEeCCCCEEEecCCCCCccCCCCCCCCcCCEEeee
Confidence 99999999999999999999999999999999999988888887653
No 2
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=100.00 E-value=2.9e-73 Score=529.38 Aligned_cols=364 Identities=26% Similarity=0.424 Sum_probs=318.7
Q ss_pred eeecCCeeEEE-eCCcEEEEeCCCCCccCCCCCCCeeeeeeeecCCCCCCEEEEecCCceEEEEEcCCcEEEeeCCCCCc
Q 017198 3 ITTGRYHTLLI-SNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSASENHAAFVLQSGQVFTCGDNSSFC 81 (375)
Q Consensus 3 i~~G~~~~~~l-~~g~l~~wG~n~~g~Lg~~~~~~~~~~~~~~~~~~~~~i~~i~~g~~~~~~lt~~g~vy~~G~n~~gq 81 (375)
+.+-..+++++ +||+||+||.|.+||||.++... ...|+++......+|++|+||..|+++|++||+||+||.|.+||
T Consensus 6 ~~~~~~~~~~l~~~G~v~~wG~n~~GqLG~~~~~~-~~~p~~v~~~~~~~i~~i~~G~~~~~~l~~~G~v~~wG~n~~Gq 84 (389)
T 3kci_A 6 HHSSGRENLYFQGSGTIYGWGHNHRGQLGGIEGAK-VKVPTPCEALATLRPVQLIGGEQTLFAVTADGKLYATGYGAGGR 84 (389)
T ss_dssp ---------------CEEEEEECTTSTTSSCSCSE-EEEEEECHHHHHTCEEEEEEETTEEEEEETTSCEEEEECCGGGT
T ss_pred cccCcccceeECCCCeEEEeeCCCCccCCCCcCcc-ccCCEecccccCCceEEEEeCCCeEEEEcCCCcEEEEECCCCCC
Confidence 44556778889 99999999999999999877665 66788887777779999999999999999999999999999999
Q ss_pred ccCCCCCCceecCEEccccCCcC--eEEEEccCCeEEEEEcCCCEEEEeCCCCCcccCCCCCCCCcceeecCCCCCCCEE
Q 017198 82 CGHRDTNRPIFRPRLVEALKGVP--CKQVTAGLNFTGFLTIRGHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVV 159 (375)
Q Consensus 82 lg~~~~~~~~~~p~~i~~~~~~~--i~~v~~g~~~~~~lt~~g~v~~~G~n~~g~lg~~~~~~~~~p~~~~~~~~~~~i~ 159 (375)
||.+... ....|+++..+.... +++|+||..|+++|+++|+||+||.|.+||||.+.......|..+..+.. .+|+
T Consensus 85 LG~g~~~-~~~~p~~v~~~~~~~~~~v~i~~G~~h~~al~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~l~~-~~i~ 162 (389)
T 3kci_A 85 LGIGGTE-SVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKLGHGNRSPCDRPRVIESLRG-IEVV 162 (389)
T ss_dssp TSSSSSC-CEEEEEECGGGTTSCEEEEEECTTCSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTT-SCEE
T ss_pred CCCCCcC-CccCCEEcccccCCceeEEEECcCCCeEEEEcCCCCEEEEeCCCCCcCCCCCCccCcCCeEecccCC-CeEE
Confidence 9998764 477888888877664 47888999999999999999999999999999998888888998887754 6899
Q ss_pred EEEeCCCeEEEEECCCcEEEEeCCCCCccCCCCCCCccCceeeeccccCCccEEEEEcCC--CeEEEEeCCCCEEEEeCC
Q 017198 160 QIAAGPSYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGD--EHVVALDSSGYVYTWGKG 237 (375)
Q Consensus 160 ~i~~g~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~p~~i~~~~~~~~~i~~i~~g~--~~~~~lt~~g~v~~~G~n 237 (375)
+|+||.+|+++|+++|+||+||.|.++|||.+.......|++++.+. ..+|++|+||. .|+++|+++|+||+||.|
T Consensus 163 ~va~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~--~~~v~~ia~G~g~~~t~~l~~~G~v~~wG~n 240 (389)
T 3kci_A 163 DVAAGGAHSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLVEALQ--GHRVVDIACGSGDAQTLCLTDDDTVWSWGDG 240 (389)
T ss_dssp EEEECSSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGT--TSCEEEEEECCSSCEEEEEETTTEEEEEECC
T ss_pred EEEeCcCeEEEEeCCCeEEEeCCCCCCCcCCCCCcccccceEecccC--CCeEEEEEEcCCCcEEEEEccCCEEEEEeCC
Confidence 99999999999999999999999999999999998888898887664 44899999985 899999999999999999
Q ss_pred CCCCCCCCCCCCcccCeeccCCCCCceEEEEecCCcEEEEEcCCcEEEEeCCCCCCCCCCCCCCCCceecceEcCccCCC
Q 017198 238 YCGALGHGDEIDKTLPEPLSSLKSHLAVQVCARKRKTFVLVDTGSVYGFGWMGFGSLGFPDRGVSDKVLRPRILDSLRAH 317 (375)
Q Consensus 238 ~~gqlg~~~~~~~~~p~~i~~~~~~~i~~i~~g~~~~~~l~~~g~vy~~G~n~~gqlg~~~~~~~~~~~~p~~~~~~~~~ 317 (375)
.+||||.+.......|.++..+.+.+|++|+||.+|+++|+++|+||+||.|.++|||.+. ......|..++.+.+.
T Consensus 241 ~~GqLG~g~~~~~~~p~~v~~~~~~~v~~v~~G~~hs~alt~~G~v~~wG~n~~GqLG~g~---~~~~~~P~~v~~l~~~ 317 (389)
T 3kci_A 241 DYGKLGRGGSDGCKVPMKIDSLTGLGVVKVECGSQFSVALTKSGAVYTWGKGDYHRLGHGS---DDHVRRPRQVQGLQGK 317 (389)
T ss_dssp GGGTTSSSSCCCEEEEEECGGGTTSCEEEEEEETTEEEEEETTSCEEEEECCGGGTTCSSS---CCCEEEEEECGGGTTC
T ss_pred CCCCCCCCCCCCccccEEecccCCCcEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCC---CccccCCeEeccCCCC
Confidence 9999999998888999999988888999999999999999999999999999999999986 4567789999999888
Q ss_pred cEEEEEeCCCceEEEEcCCCEEEeeCCCCCCCCcCCCCCcccceEEEeccccccccC
Q 017198 318 HVSQISTGLYHTVVVTDRGRLFGFGDNERAQLGHDTLRGCLEPTEIFIQEMEEDTGL 374 (375)
Q Consensus 318 ~i~~i~~G~~h~~~l~~~g~v~~wG~n~~gqlG~g~~~~~~~p~~v~~~~~~~~~~~ 374 (375)
+|++|+||.+|+++|+++|+||+||+|.+||||.|+.+...+|+.|......++.+|
T Consensus 318 ~v~~ia~G~~h~~al~~~G~v~~wG~n~~GqLG~g~~~~~~~P~~v~~~~~~~v~~v 374 (389)
T 3kci_A 318 KVIAIATGSLHCVCCTEDGEVYTWGDNDEGQLGDGTTNAIQRPRLVAALQGKKVNRV 374 (389)
T ss_dssp CEEEEEECSSEEEEEETTCCEEEEECCTTSTTCSSSCCCEEEEEECGGGTTSCCCEE
T ss_pred CEEEEEeccCeEEEECCCCCEEEeeCCCCCcCCCCCCCCccCcEEecccCCCCEEEE
Confidence 999999999999999999999999999999999999999999999876665555544
No 3
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B
Probab=100.00 E-value=1.6e-70 Score=515.38 Aligned_cols=354 Identities=25% Similarity=0.353 Sum_probs=306.6
Q ss_pred eeeecCCeeEEE-eCCcEEEEeCCCCCccCCCCCCCeeeeeeeecCCCCCCEEEEecCCceEEEEEcCCcEEEeeCCCCC
Q 017198 2 QITTGRYHTLLI-SNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSASENHAAFVLQSGQVFTCGDNSSF 80 (375)
Q Consensus 2 ~i~~G~~~~~~l-~~g~l~~wG~n~~g~Lg~~~~~~~~~~~~~~~~~~~~~i~~i~~g~~~~~~lt~~g~vy~~G~n~~g 80 (375)
+.+.+..|++++ ++|+||+||.|.+||||.+........|+++..+ .+|++|+||..|+++|++||+||+||.|.+|
T Consensus 12 ~~~~~~~h~~~l~~~g~v~~wG~n~~GqLG~g~~~~~~~~P~~v~~~--~~i~~va~G~~hs~~l~~~G~v~~wG~n~~G 89 (413)
T 1a12_A 12 SKKVKVSHRSHSTEPGLVLTLGQGDVGQLGLGENVMERKKPALVSIP--EDVVQAEAGGMHTVCLSKSGQVYSFGCNDEG 89 (413)
T ss_dssp -CCCCCCCTTCCCCCBEEEEEEECTTSTTCSCTTCCEEEEEEEECCS--SCEEEEEECSSEEEEEETTSCEEEEECCTTS
T ss_pred hhhhccccceeecCCCcEEEEECCCCCcCCCCCCccccccceEccCC--CCeEEEEeCCCeEEEEcCCCCEEEEECCCCC
Confidence 356678999999 9999999999999999999877656677777654 5999999999999999999999999999999
Q ss_pred cccCCCCC-CceecCEEccccCCcCeEEEEccCCeEEEEEcCCCEEEEeC--CCCCcccCCCCCCC-CcceeecCCCCCC
Q 017198 81 CCGHRDTN-RPIFRPRLVEALKGVPCKQVTAGLNFTGFLTIRGHVHTCGS--NTHGQLGHGDTLDR-PTPKSIAPLEEVG 156 (375)
Q Consensus 81 qlg~~~~~-~~~~~p~~i~~~~~~~i~~v~~g~~~~~~lt~~g~v~~~G~--n~~g~lg~~~~~~~-~~p~~~~~~~~~~ 156 (375)
|||.+... .....|+++.. . .+|++|+||.+|+++|+++|+||+||. |.+||||.+..... ..|.++.. ..
T Consensus 90 qLG~~~~~~~~~~~P~~v~l-~-~~i~~va~G~~hs~alt~~G~v~~wG~~~n~~GqlG~~~~~~~~~~P~~v~~---~~ 164 (413)
T 1a12_A 90 ALGRDTSVEGSEMVPGKVEL-Q-EKVVQVSAGDSHTAALTDDGRVFLWGSFRDNNGVIGLLEPMKKSMVPVQVQL---DV 164 (413)
T ss_dssp TTCSCCCSTTGGGSCEECCC-C-SCEEEEEECSSEEEEEETTSCEEEEECEEETTEEEESSBBTBCEEEEEEECC---SS
T ss_pred CCCCCCCCCccccCCeEecC-C-CcEEEEecCCCeEEEEcCCCcEEEeeCCcCCCCccCcCCccccccCCEEecC---CC
Confidence 99998763 34677888854 2 389999999999999999999999999 89999998765443 34777633 27
Q ss_pred CEEEEEeCCCeEEEEECCCcEEEEeCCCCCccCCCCCCC-----------ccCceeeecccc---CCccEEEEEcCCCeE
Q 017198 157 SVVQIAAGPSYMLAVTGNGVVYSFGSGSNFCLGHGEQHD-----------ELQPRAIQTFRR---KGIHVVRVSAGDEHV 222 (375)
Q Consensus 157 ~i~~i~~g~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~-----------~~~p~~i~~~~~---~~~~i~~i~~g~~~~ 222 (375)
+|++|+||.+|+++|+++|+||+||.|.++|||.+.... ...|+.+..... ...+|++|+||..|+
T Consensus 165 ~i~~ia~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~P~~v~~~~~g~~~~~~i~~ia~G~~hs 244 (413)
T 1a12_A 165 PVVKVASGNDHLVMLTADGDLYTLGCGEQGQLGRVPELFANRGGRQGLERLLVPKCVMLKSRGSRGHVRFQDAFCGAYFT 244 (413)
T ss_dssp CEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSCGGGTSSSCGGGGHHHHHSCEECCCBCSSCCSBCCEEEEEEETTEE
T ss_pred CEEEEEecCceEEEEcCCCCEEEeeCCCCCccCCCccccccccccccccccccCceEeeccccccCCccEEEEEeCCCEE
Confidence 899999999999999999999999999999999865421 235654443211 335799999999999
Q ss_pred EEEeCCCCEEEEeCCCCCCCCCCCCCCcccCeeccCCCC--CceEEEEecCCcEEEEEcCCcEEEEeCCCCCCCCCCCCC
Q 017198 223 VALDSSGYVYTWGKGYCGALGHGDEIDKTLPEPLSSLKS--HLAVQVCARKRKTFVLVDTGSVYGFGWMGFGSLGFPDRG 300 (375)
Q Consensus 223 ~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~p~~i~~~~~--~~i~~i~~g~~~~~~l~~~g~vy~~G~n~~gqlg~~~~~ 300 (375)
++|+++|+||+||.|.+||||.+.......|+++..+.+ .+|++|+||.+|+++|+++|+||+||.|.++|||.+..
T Consensus 245 ~alt~~G~v~~wG~n~~gqLG~~~~~~~~~P~~v~~l~~~~~~v~~ia~G~~hs~al~~~G~v~~wG~n~~GqLG~g~~- 323 (413)
T 1a12_A 245 FAISHEGHVYGFGLSNYHQLGTPGTESCFIPQNLTSFKNSTKSWVGFSGGQHHTVCMDSEGKAYSLGRAEYGRLGLGEG- 323 (413)
T ss_dssp EEEETTCCEEEEECCTTSTTSCSSCSCEEEEEECGGGCCTTCCEEEEEECSSEEEEEETTSCEEEEECCGGGTTCSCTT-
T ss_pred EEEeCCCCEEEEeCCCCcCCCCCCCCcccccEEchhccCCCceEEEEecccceEEEEeCCCCEEEeeCCCCCccCCCCC-
Confidence 999999999999999999999999888889999988776 67999999999999999999999999999999998742
Q ss_pred CCCceecceEcCccCCCcEEEEEeCCCceEEEEcCCCEEEeeCCCCCCCCcCCCCCcccceEEEec
Q 017198 301 VSDKVLRPRILDSLRAHHVSQISTGLYHTVVVTDRGRLFGFGDNERAQLGHDTLRGCLEPTEIFIQ 366 (375)
Q Consensus 301 ~~~~~~~p~~~~~~~~~~i~~i~~G~~h~~~l~~~g~v~~wG~n~~gqlG~g~~~~~~~p~~v~~~ 366 (375)
......|++++.+. +|++|+||.+|+++|+++|+||+||+|.+||||.++.+...+|+.|..+
T Consensus 324 -~~~~~~P~~v~~l~--~v~~v~~G~~hs~alt~~G~v~~wG~n~~gqLG~g~~~~~~~P~~v~~~ 386 (413)
T 1a12_A 324 -AEEKSIPTLISRLP--AVSSVACGASVGYAVTKDGRVFAWGMGTNYQLGTGQDEDAWSPVEMMGK 386 (413)
T ss_dssp -CCCEEEEEECCSSS--SEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSCSCEEEEEECCST
T ss_pred -CccccCCEEecccC--ceeEEEECcceEEEEeCCCCEEEecCCCCCCCCCCCCCCcccCeEcccc
Confidence 34567899998776 8999999999999999999999999999999999999888889888753
No 4
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster}
Probab=100.00 E-value=5e-70 Score=513.93 Aligned_cols=350 Identities=21% Similarity=0.283 Sum_probs=302.3
Q ss_pred CeeeecCCeeEEE-eCCcEEEEeCCCCCccCCCCCCCeeeeeeeecCCCCCCEEEEecCCceEEEEEcCCcEEEeeCCCC
Q 017198 1 MQITTGRYHTLLI-SNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSASENHAAFVLQSGQVFTCGDNSS 79 (375)
Q Consensus 1 v~i~~G~~~~~~l-~~g~l~~wG~n~~g~Lg~~~~~~~~~~~~~~~~~~~~~i~~i~~g~~~~~~lt~~g~vy~~G~n~~ 79 (375)
.+|+||..|++++ ++|+||+||.|.+||||.+........|+++.. ...|++|+||..|+++|++||+||+||.|.+
T Consensus 27 ~~ia~g~~~~~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~~p~~v~~--l~~v~~va~G~~h~~~l~~~G~v~~wG~n~~ 104 (423)
T 3mvd_K 27 ARIAFHLELPKRRTVLGNVLVCGNGDVGQLGLGEDILERKRLSPVAG--IPDAVDISAGGMHNLVLTKSGDIYSFGCNDE 104 (423)
T ss_dssp --CCCCCCCCCCCCCCEEEEEEEECTTSTTCSCSSCCEEEEEEECCS--CSSEEEEEECSSEEEEEETTSCEEEEECCSS
T ss_pred eEEecCCccceeecCCCcEEEEeCCCCCCCCCCCCCccCcCCeEccC--CCCceEEeeCCCeEEEEeCCCeEEEeECCCC
Confidence 3789999999999 999999999999999999977665556666554 3479999999999999999999999999999
Q ss_pred CcccCCCCCC-ceecCEEccccCCcCeEEEEccCCeEEEEEcCCCEEEEeC--CCCCcccCCCCCCCCcceeecCCCCCC
Q 017198 80 FCCGHRDTNR-PIFRPRLVEALKGVPCKQVTAGLNFTGFLTIRGHVHTCGS--NTHGQLGHGDTLDRPTPKSIAPLEEVG 156 (375)
Q Consensus 80 gqlg~~~~~~-~~~~p~~i~~~~~~~i~~v~~g~~~~~~lt~~g~v~~~G~--n~~g~lg~~~~~~~~~p~~~~~~~~~~ 156 (375)
||||.+.... ....|.++... .+|++|+||..|+++|+++|+||+||. |.+||||.+.......|+.+... .
T Consensus 105 GqLG~~~~~~~~~~~P~~v~~~--~~i~~va~G~~hs~al~~~G~v~~wG~~~n~~GqlG~~~~~~~~~p~~~~~~---~ 179 (423)
T 3mvd_K 105 GALGRDTSEDGSESKPDLIDLP--GKALCISAGDSHSACLLEDGRVFAWGSFRDSHGNMGLTIDGNKRTPIDLMEG---T 179 (423)
T ss_dssp STTCSCCCSTTSSSSCEECCCS--SCEEEEEECSSEEEEEETTSCEEEEECEECSSSEEESBTTBCEEEEEESSTT---C
T ss_pred cCCCCCCcCCccccCCeEEcCC--CCEEEEEcCcCeEEEEeCCCeEEEEeCCCCCCCCcCcCCCCCCceeeEecCC---C
Confidence 9999987643 36778888753 379999999999999999999999999 99999999877766666665332 7
Q ss_pred CEEEEEeCCCeEEEEECCCcEEEEeCCCCCccCCCCCC-----------CccCceeeeccccCCccEEEEEcCCCeEEEE
Q 017198 157 SVVQIAAGPSYMLAVTGNGVVYSFGSGSNFCLGHGEQH-----------DELQPRAIQTFRRKGIHVVRVSAGDEHVVAL 225 (375)
Q Consensus 157 ~i~~i~~g~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~-----------~~~~p~~i~~~~~~~~~i~~i~~g~~~~~~l 225 (375)
+|++|+||.+|+++|+++|+||+||.|.++|||.+... ....|.++... ...+|++|+|+..|++++
T Consensus 180 ~i~~va~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~p~~v~~~--~~~~v~~i~~g~~~~~~~ 257 (423)
T 3mvd_K 180 VCCSIASGADHLVILTTAGKVFTVGCAEQGQLGRLSERSISGEGRRGKRDLLRPTQLIIT--RAKPFEAIWATNYCTFMR 257 (423)
T ss_dssp CEEEEEECSSEEEEEETTSCEEEEECCTTSTTSSCCTTTTTSCSTTTTTTTSSCEEECCT--TCCCEEEEEEETTEEEEE
T ss_pred cEEEEecCCCeEEEEecCCeEEEeeCCcCCccCCCcccccccccccccccccCCeEEeec--CCccEEEEEECCcEEEEE
Confidence 89999999999999999999999999999999997643 34567777654 334799999999999999
Q ss_pred -eCCCCEEEEeCCCCCCCCCCCCCCcc--cCeeccCCCCCceEEEEecCCcEEEEEcCCcEEEEeCCCCCCCCCCCCCCC
Q 017198 226 -DSSGYVYTWGKGYCGALGHGDEIDKT--LPEPLSSLKSHLAVQVCARKRKTFVLVDTGSVYGFGWMGFGSLGFPDRGVS 302 (375)
Q Consensus 226 -t~~g~v~~~G~n~~gqlg~~~~~~~~--~p~~i~~~~~~~i~~i~~g~~~~~~l~~~g~vy~~G~n~~gqlg~~~~~~~ 302 (375)
+++|+||+||.|.++|||.+...... .|.++. ..+|++|+||.+|+++|+++|+||+||.|.++|||.+.. .
T Consensus 258 ~~~~g~v~~wG~n~~gqlg~~~~~~~~~~~p~~~~---~~~v~~ia~G~~ht~alt~~G~v~~wG~n~~GqLG~g~~--~ 332 (423)
T 3mvd_K 258 ESQTQVIWATGLNNFKQLAHETKGKEFALTPIKTE---LKDIRHIAGGQHHTVILTTDLKCSVVGRPEYGRLGLGDV--K 332 (423)
T ss_dssp ETTTCCEEEEEECTTCTTSSCCTTCSEEEEEEEEC---CCSEEEEEECSSEEEEEETTCCEEEEECCGGGTTCSSSC--C
T ss_pred ECCCCeEEEEeCCCCCcCCCCCCCCceeeeeEEcC---CCCeEEEEcccCeEEEEeCCCcEEEEECCCCCCCCCCCc--c
Confidence 69999999999999999996554433 454443 346999999999999999999999999999999999863 2
Q ss_pred CceecceEcCccCCCcEEEEEeCCCceEEEEcCCCEEEeeCCCCCCCCcCCCCCcccceEEEe
Q 017198 303 DKVLRPRILDSLRAHHVSQISTGLYHTVVVTDRGRLFGFGDNERAQLGHDTLRGCLEPTEIFI 365 (375)
Q Consensus 303 ~~~~~p~~~~~~~~~~i~~i~~G~~h~~~l~~~g~v~~wG~n~~gqlG~g~~~~~~~p~~v~~ 365 (375)
+....|.+++.+.+ +|++|+||.+|+++|+++|+||+||+|.+||||+|+.....+|+.|..
T Consensus 333 ~~~~~p~~v~~l~~-~v~~ia~G~~hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~P~~v~~ 394 (423)
T 3mvd_K 333 DVVEKPTIVKKLTE-KIVSVGCGEVCSYAVTIDGKLYSWGSGVNNQLGVGDGDDELEPIVVVS 394 (423)
T ss_dssp SCEEEEEECTTCCS-CEEEEEEETTEEEEEETTSCEEEEECCTTSCSSSSSSCCEEEEEECCS
T ss_pred ccccCceEeccCCC-CEEEEEcCCCeEEEEcCCCCEEEECCCCCCCCCCCCCCCcccCeEEeC
Confidence 33567888988877 899999999999999999999999999999999999999999999875
No 5
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.6e-68 Score=509.23 Aligned_cols=357 Identities=22% Similarity=0.344 Sum_probs=302.1
Q ss_pred eeeecCCeeEEE-eCCcEEEEeCCCCCccCCCCCCC--eeeeeeeecCC--CCCCEEEEecCCceEEEEEcCCcEEEeeC
Q 017198 2 QITTGRYHTLLI-SNSSVFSCGSSLCGVLGHGPETT--QCVSFTRINFP--SAAHVVQVSASENHAAFVLQSGQVFTCGD 76 (375)
Q Consensus 2 ~i~~G~~~~~~l-~~g~l~~wG~n~~g~Lg~~~~~~--~~~~~~~~~~~--~~~~i~~i~~g~~~~~~lt~~g~vy~~G~ 76 (375)
+..+...|++++ ++++||+||.|.+||||.+.... ....|+++.+. ...+|++|+||..|+++|+++|+||+||.
T Consensus 14 ~~~~~~~h~~~~~~~g~v~~wG~n~~GqLG~G~~~~~~~~~~P~~~~~~~~~~~~i~~va~G~~Ht~alt~~G~v~~wG~ 93 (473)
T 3of7_A 14 NAQEDYKHMYLSVQPLDIFCWGTGSMCELGLGPLAKNKEVKRPRLNPFLPRDEAKIISFAVGGMHTLALDEESNVWSWGC 93 (473)
T ss_dssp CCGGGGHHHHCCSSCCEEEEEEECTTSTTCSCSCGGGGEEEEEEECTTSCTTTTCEEEEEECSSEEEEEETTCCEEEEEC
T ss_pred hhcccccccccCCCCccEEEEcCCCCCccCCCCCcccccccCcccccccccCCCCEEEEEeCCCeEEEEecCCeEEEeEC
Confidence 345678899999 99999999999999999998643 34556666554 34599999999999999999999999999
Q ss_pred CCCCcccCCCCCCc----------------------eecCEEccc--c----CCcCeEEEEccCCeEEEEEcCCCEEEEe
Q 017198 77 NSSFCCGHRDTNRP----------------------IFRPRLVEA--L----KGVPCKQVTAGLNFTGFLTIRGHVHTCG 128 (375)
Q Consensus 77 n~~gqlg~~~~~~~----------------------~~~p~~i~~--~----~~~~i~~v~~g~~~~~~lt~~g~v~~~G 128 (375)
|++||||.+..... ...|.++.. + .+.+|++|+||..|+++|+++|+||+||
T Consensus 94 n~~GqLG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~v~~~~l~~~~~~~~i~~va~G~~hs~alt~~G~vy~wG 173 (473)
T 3of7_A 94 NDVGALGRDTSNAKEQLKDMDADDSSDDEDGDLNELESTPAKIPRESFPPLAEGHKVVQLAATDNMSCALFSNGEVYAWG 173 (473)
T ss_dssp CTTSTTCSCCC---------------------CCHHHHSCEECCGGGCHHHHTTCCEEEEEECSSEEEEEETTSCEEEEE
T ss_pred CCCCCCCCCCcccccccccccccccCccccccccccccCceecccccCCcccCCCcEEEEEccCCEEEEEeCCCeEEEee
Confidence 99999998875431 457888874 4 3678999999999999999999999999
Q ss_pred C--CCCCcccCCCC--CCCCcceeecCCCCCCCEEEEEeCCCeEEEEECCCcEEEEeCCCCCccCCCCCCC----ccCce
Q 017198 129 S--NTHGQLGHGDT--LDRPTPKSIAPLEEVGSVVQIAAGPSYMLAVTGNGVVYSFGSGSNFCLGHGEQHD----ELQPR 200 (375)
Q Consensus 129 ~--n~~g~lg~~~~--~~~~~p~~~~~~~~~~~i~~i~~g~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~----~~~p~ 200 (375)
. +..||||.... .....|..++.+.. .+|++|+||.+|+++|+++|+||+||.|.++|||.+.... ...|.
T Consensus 174 ~n~~~~GqLG~~~~~~~~~~~P~~v~~l~~-~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~p~ 252 (473)
T 3of7_A 174 TFRCNEGILGFYQDKIKIQKTPWKVPTFSK-YNIVQLAPGKDHILFLDEEGMVFAWGNGQQNQLGRKVMERFRLKTLDPR 252 (473)
T ss_dssp CEEETTEEEESBTTTBSCEEEEEECCCCCS-SCEEEEEECSSEEEEEETTSCEEEEECCTTSTTSSCCCGGGTTTTCSCE
T ss_pred CCcCCCCccCCCCCCCccccCcEEccccCC-CCEEEEEecCCeEEEEeCCCeEEEEeCCCCCCCCCCccccccccccCce
Confidence 8 68899997543 34467888877754 5799999999999999999999999999999999986543 34555
Q ss_pred eeeccccCCccEEEEEcCCCeEEEEeCCCCEEEEeCCCCCCCCCCCCC----CcccCeeccCCCCCceEEEEecCCcEEE
Q 017198 201 AIQTFRRKGIHVVRVSAGDEHVVALDSSGYVYTWGKGYCGALGHGDEI----DKTLPEPLSSLKSHLAVQVCARKRKTFV 276 (375)
Q Consensus 201 ~i~~~~~~~~~i~~i~~g~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~----~~~~p~~i~~~~~~~i~~i~~g~~~~~~ 276 (375)
.+.. .+|++|+||..|+++|+++|+||+||.|.+||||.+... ....|+++..+...+|++|+||.+|+++
T Consensus 253 ~~~~-----~~v~~Ia~G~~hs~alt~~G~v~~wG~n~~GqlG~~~~~~~~~~~~~P~~v~~~~~~~i~~ia~G~~hs~~ 327 (473)
T 3of7_A 253 PFGL-----RHVKYIASGENHCFALTKDNKLVSWGLNQFGQCGVSEDVEDGALVTKPKRLALPDNVVIRSIAAGEHHSLI 327 (473)
T ss_dssp ECSC-----CSEEEEEECSSEEEEEETTSCEEEEEECTTSTTCCCSCCCTTCEEEEEEECCCCTTCCEEEEEECSSEEEE
T ss_pred ecCC-----cceEEEecCCCeEEEEecCCCEEEeCCCCCCCcCCCCcccCCceeeccccccccCCccEEEEEeCCCeEEE
Confidence 5432 379999999999999999999999999999999998764 3457888988888899999999999999
Q ss_pred EEcCCcEEEEeCCCCCCCCCCCCC-----------CCCceecceEcCccCCCcEEEEEeCCCceEEEEcCCCEEEeeCCC
Q 017198 277 LVDTGSVYGFGWMGFGSLGFPDRG-----------VSDKVLRPRILDSLRAHHVSQISTGLYHTVVVTDRGRLFGFGDNE 345 (375)
Q Consensus 277 l~~~g~vy~~G~n~~gqlg~~~~~-----------~~~~~~~p~~~~~~~~~~i~~i~~G~~h~~~l~~~g~v~~wG~n~ 345 (375)
|+++|+||+||.|.++|||.+... .......|..++.+. +|++|+||.+|+++|+++|+||+||+|.
T Consensus 328 lt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~~~~P~~v~~~~--~v~~Ia~G~~hs~al~~~G~vy~wG~n~ 405 (473)
T 3of7_A 328 LSQDGDLYSCGRLDMFEVGIPKDNLPEYTYKDVHGKARAVPLPTKLNNVP--KFKSVAAGSHHSVAVAQNGIAYSWGFGE 405 (473)
T ss_dssp EETTSCEEEEEECTTCTTCCCGGGCCTTCEECTTSCEEEEEEEEECCSSC--CEEEEEECSSEEEEEETTSCEEEEECCT
T ss_pred EeCCCeEEEEECCCCCccCCCccccccccccccCCceeeeccCcccCCCC--ceEEEEeCCCeEEEEeCCCcEEEeeCCC
Confidence 999999999999999999986521 112234677776554 7999999999999999999999999999
Q ss_pred CCCCCcCC-CCCcccceEEEec
Q 017198 346 RAQLGHDT-LRGCLEPTEIFIQ 366 (375)
Q Consensus 346 ~gqlG~g~-~~~~~~p~~v~~~ 366 (375)
+||||+|+ .+....|+.|...
T Consensus 406 ~GqLG~g~~~~~~~~P~~v~~~ 427 (473)
T 3of7_A 406 TYAVGLGPFEDDTEVPTRIKNT 427 (473)
T ss_dssp TCTTCCCSCCSCEEEEEECCCT
T ss_pred CCCCCCCCCCccccCCeEeccc
Confidence 99999998 8889999998754
No 6
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=100.00 E-value=3.3e-66 Score=481.92 Aligned_cols=328 Identities=28% Similarity=0.488 Sum_probs=299.7
Q ss_pred CeeeecCCeeEEE-eCCcEEEEeCCCCCccCCCCCCCeeeeeeeecCCCCC--CEEEEecCCceEEEEEcCCcEEEeeCC
Q 017198 1 MQITTGRYHTLLI-SNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAA--HVVQVSASENHAAFVLQSGQVFTCGDN 77 (375)
Q Consensus 1 v~i~~G~~~~~~l-~~g~l~~wG~n~~g~Lg~~~~~~~~~~~~~~~~~~~~--~i~~i~~g~~~~~~lt~~g~vy~~G~n 77 (375)
++|+||.+|+++| +||+||+||.|.+||||.+.... ...|+++...... ++++|+||..|+++|++||+||+||.|
T Consensus 56 ~~i~~G~~~~~~l~~~G~v~~wG~n~~GqLG~g~~~~-~~~p~~v~~~~~~~~~~v~i~~G~~h~~al~~~G~v~~wG~n 134 (389)
T 3kci_A 56 VQLIGGEQTLFAVTADGKLYATGYGAGGRLGIGGTES-VSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGEA 134 (389)
T ss_dssp EEEEEETTEEEEEETTSCEEEEECCGGGTTSSSSSCC-EEEEEECGGGTTSCEEEEEECTTCSEEEEEETTSCEEEEECC
T ss_pred EEEEeCCCeEEEEcCCCcEEEEECCCCCCCCCCCcCC-ccCCEEcccccCCceeEEEECcCCCeEEEEcCCCCEEEEeCC
Confidence 4799999999999 99999999999999999998766 5667777755544 558899999999999999999999999
Q ss_pred CCCcccCCCCCCceecCEEccccCCcCeEEEEccCCeEEEEEcCCCEEEEeCCCCCcccCCCCCCCCcceeecCCCCCCC
Q 017198 78 SSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGLNFTGFLTIRGHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGS 157 (375)
Q Consensus 78 ~~gqlg~~~~~~~~~~p~~i~~~~~~~i~~v~~g~~~~~~lt~~g~v~~~G~n~~g~lg~~~~~~~~~p~~~~~~~~~~~ 157 (375)
.+||||.+... ....|+.+..+.+.+|++|+||..|+++|+++|+||+||.|.+||||.+.......|..+..+.. .+
T Consensus 135 ~~GqLG~g~~~-~~~~p~~v~~l~~~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~~-~~ 212 (389)
T 3kci_A 135 EDGKLGHGNRS-PCDRPRVIESLRGIEVVDVAAGGAHSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLVEALQG-HR 212 (389)
T ss_dssp GGGTTCSSSCC-CEEEEEECGGGTTSCEEEEEECSSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTT-SC
T ss_pred CCCcCCCCCCc-cCcCCeEecccCCCeEEEEEeCcCeEEEEeCCCeEEEeCCCCCCCcCCCCCcccccceEecccCC-Ce
Confidence 99999998874 46789999999998999999999999999999999999999999999998888888998887754 68
Q ss_pred EEEEEeCC--CeEEEEECCCcEEEEeCCCCCccCCCCCCCccCceeeeccccCCccEEEEEcCCCeEEEEeCCCCEEEEe
Q 017198 158 VVQIAAGP--SYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGDEHVVALDSSGYVYTWG 235 (375)
Q Consensus 158 i~~i~~g~--~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~p~~i~~~~~~~~~i~~i~~g~~~~~~lt~~g~v~~~G 235 (375)
|++|+||. .|+++|+++|+||+||.|.++|||.+.......|.+++.+. ..+|++|+||..|+++|+++|+||+||
T Consensus 213 v~~ia~G~g~~~t~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~--~~~v~~v~~G~~hs~alt~~G~v~~wG 290 (389)
T 3kci_A 213 VVDIACGSGDAQTLCLTDDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSLT--GLGVVKVECGSQFSVALTKSGAVYTWG 290 (389)
T ss_dssp EEEEEECCSSCEEEEEETTTEEEEEECCGGGTTSSSSCCCEEEEEECGGGT--TSCEEEEEEETTEEEEEETTSCEEEEE
T ss_pred EEEEEEcCCCcEEEEEccCCEEEEEeCCCCCCCCCCCCCCccccEEecccC--CCcEEEEeCCCCEEEEEeCCCeEEEEe
Confidence 99999995 89999999999999999999999999988888898887664 447999999999999999999999999
Q ss_pred CCCCCCCCCCCCCCcccCeeccCCCCCceEEEEecCCcEEEEEcCCcEEEEeCCCCCCCCCCCCCCCCceecceEcCccC
Q 017198 236 KGYCGALGHGDEIDKTLPEPLSSLKSHLAVQVCARKRKTFVLVDTGSVYGFGWMGFGSLGFPDRGVSDKVLRPRILDSLR 315 (375)
Q Consensus 236 ~n~~gqlg~~~~~~~~~p~~i~~~~~~~i~~i~~g~~~~~~l~~~g~vy~~G~n~~gqlg~~~~~~~~~~~~p~~~~~~~ 315 (375)
.|.+||||.+.......|+++..+...+|++|+||.+|+++++++|+||+||.|.++|||.+. ......|+.++.+.
T Consensus 291 ~n~~GqLG~g~~~~~~~P~~v~~l~~~~v~~ia~G~~h~~al~~~G~v~~wG~n~~GqLG~g~---~~~~~~P~~v~~~~ 367 (389)
T 3kci_A 291 KGDYHRLGHGSDDHVRRPRQVQGLQGKKVIAIATGSLHCVCCTEDGEVYTWGDNDEGQLGDGT---TNAIQRPRLVAALQ 367 (389)
T ss_dssp CCGGGTTCSSSCCCEEEEEECGGGTTCCEEEEEECSSEEEEEETTCCEEEEECCTTSTTCSSS---CCCEEEEEECGGGT
T ss_pred CCCCCCCCCCCCccccCCeEeccCCCCCEEEEEeccCeEEEECCCCCEEEeeCCCCCcCCCCC---CCCccCcEEecccC
Confidence 999999999999888999999988888999999999999999999999999999999999987 45678899999999
Q ss_pred CCcEEEEEeCCCceEEEEcCC
Q 017198 316 AHHVSQISTGLYHTVVVTDRG 336 (375)
Q Consensus 316 ~~~i~~i~~G~~h~~~l~~~g 336 (375)
+.+|++|+||..|+++|++++
T Consensus 368 ~~~v~~va~G~~ht~al~~~~ 388 (389)
T 3kci_A 368 GKKVNRVACGSAHTLAWSTSK 388 (389)
T ss_dssp TSCCCEEEEETTEEEEECC--
T ss_pred CCCEEEEEecCCcEEEEecCC
Confidence 889999999999999998764
No 7
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A
Probab=100.00 E-value=1.2e-64 Score=473.66 Aligned_cols=318 Identities=34% Similarity=0.512 Sum_probs=294.7
Q ss_pred CCEEEEecCCceEEEEEcCCcEEEeeCCCCCcccCCCCCCceecCEEccccCCcCeEEEEccCCeEEEEEcCC-CEEEEe
Q 017198 50 AHVVQVSASENHAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGLNFTGFLTIRG-HVHTCG 128 (375)
Q Consensus 50 ~~i~~i~~g~~~~~~lt~~g~vy~~G~n~~gqlg~~~~~~~~~~p~~i~~~~~~~i~~v~~g~~~~~~lt~~g-~v~~~G 128 (375)
.+|++|+||..|+++|+++|+||+||.|.+||||.+.... ...|+++..+.+.+|++|+||..|+++|+++| +||+||
T Consensus 16 ~~v~~ia~G~~hs~al~~~g~v~~wG~n~~GqLG~g~~~~-~~~P~~v~~l~~~~i~~va~G~~ht~al~~~gg~v~~wG 94 (406)
T 4d9s_A 16 RKVLIISAGASHSVALLSGDIVCSWGRGEDGQLGHGDAED-RPSPTQLSALDGHQIVSVTCGADHTVAYSQSGMEVYSWG 94 (406)
T ss_dssp CCEEEEEECSSEEEEEETTTEEEEEECCTTSTTCSSSCCC-EEEEEECGGGTTSCEEEEEECSSEEEEEETTTTEEEEEE
T ss_pred cceEEEecCCCeEEEEEeCCEEEEEeCCCCCCCCCCCccc-CcCCEEecccCCCCEEEEEeCcceEEEEECCCCEEEEEc
Confidence 4999999999999999999999999999999999998754 68899999888889999999999999999986 999999
Q ss_pred CCCCCcccCCCCCCCCcceeecCCCCCCCEEEEEeCCCeEEEEECCCcEEEEeCCCCCccCCCCCCCccCceeeeccccC
Q 017198 129 SNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGPSYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRK 208 (375)
Q Consensus 129 ~n~~g~lg~~~~~~~~~p~~~~~~~~~~~i~~i~~g~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~p~~i~~~~~~ 208 (375)
.|.+||||.+.......|.++..+.. .+|++|+||.+|+++|+++|+||+||.|.++|||.+.......|+++..+.
T Consensus 95 ~n~~GqLG~g~~~~~~~p~~v~~l~~-~~i~~ia~G~~h~~alt~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~-- 171 (406)
T 4d9s_A 95 WGDFGRLGHGNSSDLFTPLPIKALHG-IRIKQIACGDSHCLAVTMEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQAFE-- 171 (406)
T ss_dssp CCGGGTTCSSSCCCEEEEEECGGGTT-CCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSCCCEEEEEECGGGT--
T ss_pred CCCCcCCCCCCCCccccceEecccCC-CCEEEEEEChhheEEEcCCCcEEEeCCCCCccCCCCCCCCcccceEecccC--
Confidence 99999999998877788888887654 689999999999999999999999999999999999988888898887664
Q ss_pred CccEEEEEcCCCeEEEEeCCCCEEEEeCCCCCCCCCCCCCCcccCeeccCCCCCceEEEEecCCcEEEEEcCCcEEEEeC
Q 017198 209 GIHVVRVSAGDEHVVALDSSGYVYTWGKGYCGALGHGDEIDKTLPEPLSSLKSHLAVQVCARKRKTFVLVDTGSVYGFGW 288 (375)
Q Consensus 209 ~~~i~~i~~g~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~p~~i~~~~~~~i~~i~~g~~~~~~l~~~g~vy~~G~ 288 (375)
..+|++|+||..|+++|+++|+||+||.|.+||||.+.......|+++..+...+|++|+||.+|+++|+++|+||+||.
T Consensus 172 ~~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqlG~g~~~~~~~p~~v~~~~~~~i~~va~G~~ht~~l~~~G~v~~wG~ 251 (406)
T 4d9s_A 172 GIRIKMVAAGAEHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKMSMVACGWRHTISVSYSGALYTYGW 251 (406)
T ss_dssp TCCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSSCCEEEEEECCCSTTCCEEEEEECSSEEEEEETTCCEEEEEC
T ss_pred CCcEEEEecCCCeEEEEeCCCCEEEeeCCCCCCCCCCCCCCcCccEEecccCCceEEEEEECCCcEEEEcCCCCEEEeeC
Confidence 44899999999999999999999999999999999999988999999998888899999999999999999999999999
Q ss_pred CCCCCCCCCCCCCCCceecceEcCccCCCcEEEEEeCCCceEEEEcCCCEEEeeCCCCCCCCcCCCCCcccceEEEeccc
Q 017198 289 MGFGSLGFPDRGVSDKVLRPRILDSLRAHHVSQISTGLYHTVVVTDRGRLFGFGDNERAQLGHDTLRGCLEPTEIFIQEM 368 (375)
Q Consensus 289 n~~gqlg~~~~~~~~~~~~p~~~~~~~~~~i~~i~~G~~h~~~l~~~g~v~~wG~n~~gqlG~g~~~~~~~p~~v~~~~~ 368 (375)
|.++|||.+. ......|.+++.+.+..|++|+||.+|+++|+++|+||+||+|.+||||.++......|+.+.++..
T Consensus 252 n~~GqlG~g~---~~~~~~p~~v~~~~~~~v~~i~~G~~hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~ 328 (406)
T 4d9s_A 252 SKYGQLGHGD---LEDHLIPHKLEALSNSFISQISGGWRHTMALTSDGKLYGWGWNKFGQVGVGNNLDQCSPVQVRFPDD 328 (406)
T ss_dssp CTTSTTCSSS---CCCEEEEEECGGGTTSCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSSSCEEEEEEECCGGG
T ss_pred CCCCCCCCCC---CcCccccEEecccCCCCEEEEEecCCEEEEEcCCCeEEEeeCCCCCCCCCCCCCCCccCEEEeccCC
Confidence 9999999886 4557789999999888999999999999999999999999999999999999999999999988876
Q ss_pred cccccC
Q 017198 369 EEDTGL 374 (375)
Q Consensus 369 ~~~~~~ 374 (375)
.++.+|
T Consensus 329 ~~v~~v 334 (406)
T 4d9s_A 329 QKVVQV 334 (406)
T ss_dssp CCEEEE
T ss_pred CcEEEE
Confidence 666554
No 8
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B
Probab=100.00 E-value=2.1e-64 Score=473.76 Aligned_cols=329 Identities=26% Similarity=0.387 Sum_probs=285.0
Q ss_pred CeeeecCCeeEEE-eCCcEEEEeCCCCCccCCCCCC-CeeeeeeeecCCCCCCEEEEecCCceEEEEEcCCcEEEeeC--
Q 017198 1 MQITTGRYHTLLI-SNSSVFSCGSSLCGVLGHGPET-TQCVSFTRINFPSAAHVVQVSASENHAAFVLQSGQVFTCGD-- 76 (375)
Q Consensus 1 v~i~~G~~~~~~l-~~g~l~~wG~n~~g~Lg~~~~~-~~~~~~~~~~~~~~~~i~~i~~g~~~~~~lt~~g~vy~~G~-- 76 (375)
++|+||..|+++| +||+||+||.|.+||||.+... .....|.++.++. +|++|+||..|+++|++||+||+||.
T Consensus 62 ~~va~G~~hs~~l~~~G~v~~wG~n~~GqLG~~~~~~~~~~~P~~v~l~~--~i~~va~G~~hs~alt~~G~v~~wG~~~ 139 (413)
T 1a12_A 62 VQAEAGGMHTVCLSKSGQVYSFGCNDEGALGRDTSVEGSEMVPGKVELQE--KVVQVSAGDSHTAALTDDGRVFLWGSFR 139 (413)
T ss_dssp EEEEECSSEEEEEETTSCEEEEECCTTSTTCSCCCSTTGGGSCEECCCCS--CEEEEEECSSEEEEEETTSCEEEEECEE
T ss_pred EEEEeCCCeEEEEcCCCCEEEEECCCCCCCCCCCCCCccccCCeEecCCC--cEEEEecCCCeEEEEcCCCcEEEeeCCc
Confidence 4799999999999 9999999999999999998763 2244677776544 99999999999999999999999998
Q ss_pred CCCCcccCCCCCCceecCEEccccCCcCeEEEEccCCeEEEEEcCCCEEEEeCCCCCcccCCCCCCC-----------Cc
Q 017198 77 NSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGLNFTGFLTIRGHVHTCGSNTHGQLGHGDTLDR-----------PT 145 (375)
Q Consensus 77 n~~gqlg~~~~~~~~~~p~~i~~~~~~~i~~v~~g~~~~~~lt~~g~v~~~G~n~~g~lg~~~~~~~-----------~~ 145 (375)
|.+||||..........|.++ +...+|++|+||..|+++|+++|+||+||.|.+||||.+..... ..
T Consensus 140 n~~GqlG~~~~~~~~~~P~~v--~~~~~i~~ia~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~ 217 (413)
T 1a12_A 140 DNNGVIGLLEPMKKSMVPVQV--QLDVPVVKVASGNDHLVMLTADGDLYTLGCGEQGQLGRVPELFANRGGRQGLERLLV 217 (413)
T ss_dssp ETTEEEESSBBTBCEEEEEEE--CCSSCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSCGGGTSSSCGGGGHHHHHS
T ss_pred CCCCccCcCCccccccCCEEe--cCCCCEEEEEecCceEEEEcCCCCEEEeeCCCCCccCCCcccccccccccccccccc
Confidence 999999998776555567777 45668999999999999999999999999999999998753211 34
Q ss_pred ceeecCCC----CCCCEEEEEeCCCeEEEEECCCcEEEEeCCCCCccCCCCCCCccCceeeeccccCCccEEEEEcCCCe
Q 017198 146 PKSIAPLE----EVGSVVQIAAGPSYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGDEH 221 (375)
Q Consensus 146 p~~~~~~~----~~~~i~~i~~g~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~p~~i~~~~~~~~~i~~i~~g~~~ 221 (375)
|..+.... ...+|++|+||.+|+++|+++|+||+||.|.++|||.+.......|+++..+.....+|++|+||..|
T Consensus 218 P~~v~~~~~g~~~~~~i~~ia~G~~hs~alt~~G~v~~wG~n~~gqLG~~~~~~~~~P~~v~~l~~~~~~v~~ia~G~~h 297 (413)
T 1a12_A 218 PKCVMLKSRGSRGHVRFQDAFCGAYFTFAISHEGHVYGFGLSNYHQLGTPGTESCFIPQNLTSFKNSTKSWVGFSGGQHH 297 (413)
T ss_dssp CEECCCBCSSCCSBCCEEEEEEETTEEEEEETTCCEEEEECCTTSTTSCSSCSCEEEEEECGGGCCTTCCEEEEEECSSE
T ss_pred CceEeeccccccCCccEEEEEeCCCEEEEEeCCCCEEEEeCCCCcCCCCCCCCcccccEEchhccCCCceEEEEecccce
Confidence 54443321 23689999999999999999999999999999999999888888999988776433579999999999
Q ss_pred EEEEeCCCCEEEEeCCCCCCCCCC-CCCCcccCeeccCCCCCceEEEEecCCcEEEEEcCCcEEEEeCCCCCCCCCCCCC
Q 017198 222 VVALDSSGYVYTWGKGYCGALGHG-DEIDKTLPEPLSSLKSHLAVQVCARKRKTFVLVDTGSVYGFGWMGFGSLGFPDRG 300 (375)
Q Consensus 222 ~~~lt~~g~v~~~G~n~~gqlg~~-~~~~~~~p~~i~~~~~~~i~~i~~g~~~~~~l~~~g~vy~~G~n~~gqlg~~~~~ 300 (375)
+++|+++|+||+||.|.+||||.+ .......|++|..+. +|++|+||.+|+++|+++|+||+||.|.++|||.+..
T Consensus 298 s~al~~~G~v~~wG~n~~GqLG~g~~~~~~~~P~~v~~l~--~v~~v~~G~~hs~alt~~G~v~~wG~n~~gqLG~g~~- 374 (413)
T 1a12_A 298 TVCMDSEGKAYSLGRAEYGRLGLGEGAEEKSIPTLISRLP--AVSSVACGASVGYAVTKDGRVFAWGMGTNYQLGTGQD- 374 (413)
T ss_dssp EEEEETTSCEEEEECCGGGTTCSCTTCCCEEEEEECCSSS--SEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSC-
T ss_pred EEEEeCCCCEEEeeCCCCCccCCCCCCccccCCEEecccC--ceeEEEECcceEEEEeCCCCEEEecCCCCCCCCCCCC-
Confidence 999999999999999999999998 556677899988766 6999999999999999999999999999999999873
Q ss_pred CCCceecceEcCc--cCCCcEEEEEeCCCceEEEEcCCCE
Q 017198 301 VSDKVLRPRILDS--LRAHHVSQISTGLYHTVVVTDRGRL 338 (375)
Q Consensus 301 ~~~~~~~p~~~~~--~~~~~i~~i~~G~~h~~~l~~~g~v 338 (375)
.....|++++. +.+.+|++|+||.+|+++|+++|++
T Consensus 375 --~~~~~P~~v~~~~~~~~~v~~v~~G~~ht~~l~~~g~~ 412 (413)
T 1a12_A 375 --EDAWSPVEMMGKQLENRVVLSVSSGGQHTVLLVKDKEQ 412 (413)
T ss_dssp --SCEEEEEECCSTTTTTEEEEEEEECSSEEEEEEEECSC
T ss_pred --CCcccCeEccccccCCCeEEEEeeCCCcEEEEEecCCC
Confidence 55778988874 4667899999999999999998864
No 9
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster}
Probab=100.00 E-value=6.3e-62 Score=458.70 Aligned_cols=322 Identities=23% Similarity=0.352 Sum_probs=276.0
Q ss_pred CeeeecCCeeEEE-eCCcEEEEeCCCCCccCCCCCCC-eeeeeeeecCCCCCCEEEEecCCceEEEEEcCCcEEEeeC--
Q 017198 1 MQITTGRYHTLLI-SNSSVFSCGSSLCGVLGHGPETT-QCVSFTRINFPSAAHVVQVSASENHAAFVLQSGQVFTCGD-- 76 (375)
Q Consensus 1 v~i~~G~~~~~~l-~~g~l~~wG~n~~g~Lg~~~~~~-~~~~~~~~~~~~~~~i~~i~~g~~~~~~lt~~g~vy~~G~-- 76 (375)
++|+||..|+++| +||+||+||.|.+||||.+.... ....|.++.++ .+|++|+||..|+++|++||+||+||.
T Consensus 78 ~~va~G~~h~~~l~~~G~v~~wG~n~~GqLG~~~~~~~~~~~P~~v~~~--~~i~~va~G~~hs~al~~~G~v~~wG~~~ 155 (423)
T 3mvd_K 78 VDISAGGMHNLVLTKSGDIYSFGCNDEGALGRDTSEDGSESKPDLIDLP--GKALCISAGDSHSACLLEDGRVFAWGSFR 155 (423)
T ss_dssp EEEEECSSEEEEEETTSCEEEEECCSSSTTCSCCCSTTSSSSCEECCCS--SCEEEEEECSSEEEEEETTSCEEEEECEE
T ss_pred eEEeeCCCeEEEEeCCCeEEEeECCCCcCCCCCCcCCccccCCeEEcCC--CCEEEEEcCcCeEEEEeCCCeEEEEeCCC
Confidence 4799999999999 99999999999999999987654 23456666544 489999999999999999999999998
Q ss_pred CCCCcccCCCCCCceecCEEccccCCcCeEEEEccCCeEEEEEcCCCEEEEeCCCCCcccCCCCC-----------CCCc
Q 017198 77 NSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGLNFTGFLTIRGHVHTCGSNTHGQLGHGDTL-----------DRPT 145 (375)
Q Consensus 77 n~~gqlg~~~~~~~~~~p~~i~~~~~~~i~~v~~g~~~~~~lt~~g~v~~~G~n~~g~lg~~~~~-----------~~~~ 145 (375)
|.+||||.+.... ...| +..+...+|++|+||.+|+++|+++|+||+||.|.+||||.+... ....
T Consensus 156 n~~GqlG~~~~~~-~~~p--~~~~~~~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~ 232 (423)
T 3mvd_K 156 DSHGNMGLTIDGN-KRTP--IDLMEGTVCCSIASGADHLVILTTAGKVFTVGCAEQGQLGRLSERSISGEGRRGKRDLLR 232 (423)
T ss_dssp CSSSEEESBTTBC-EEEE--EESSTTCCEEEEEECSSEEEEEETTSCEEEEECCTTSTTSSCCTTTTTSCSTTTTTTTSS
T ss_pred CCCCCcCcCCCCC-Ccee--eEecCCCcEEEEecCCCeEEEEecCCeEEEeeCCcCCccCCCcccccccccccccccccC
Confidence 9999999887643 3444 444667789999999999999999999999999999999987642 3356
Q ss_pred ceeecCCCCCCCEEEEEeCCCeEEEE-ECCCcEEEEeCCCCCccCCCCCCCcc--CceeeeccccCCccEEEEEcCCCeE
Q 017198 146 PKSIAPLEEVGSVVQIAAGPSYMLAV-TGNGVVYSFGSGSNFCLGHGEQHDEL--QPRAIQTFRRKGIHVVRVSAGDEHV 222 (375)
Q Consensus 146 p~~~~~~~~~~~i~~i~~g~~~~~~l-t~~g~v~~~G~n~~gqlg~~~~~~~~--~p~~i~~~~~~~~~i~~i~~g~~~~ 222 (375)
|..+..+.. .+|++|+||.+|++++ +++|+||+||.|.++|||.+...... .|.++. ..+|++|+||..|+
T Consensus 233 p~~v~~~~~-~~v~~i~~g~~~~~~~~~~~g~v~~wG~n~~gqlg~~~~~~~~~~~p~~~~-----~~~v~~ia~G~~ht 306 (423)
T 3mvd_K 233 PTQLIITRA-KPFEAIWATNYCTFMRESQTQVIWATGLNNFKQLAHETKGKEFALTPIKTE-----LKDIRHIAGGQHHT 306 (423)
T ss_dssp CEEECCTTC-CCEEEEEEETTEEEEEETTTCCEEEEEECTTCTTSSCCTTCSEEEEEEEEC-----CCSEEEEEECSSEE
T ss_pred CeEEeecCC-ccEEEEEECCcEEEEEECCCCeEEEEeCCCCCcCCCCCCCCceeeeeEEcC-----CCCeEEEEcccCeE
Confidence 777765433 6899999999999999 69999999999999999996554433 444443 23799999999999
Q ss_pred EEEeCCCCEEEEeCCCCCCCCCCCCCC-cccCeeccCCCCCceEEEEecCCcEEEEEcCCcEEEEeCCCCCCCCCCCCCC
Q 017198 223 VALDSSGYVYTWGKGYCGALGHGDEID-KTLPEPLSSLKSHLAVQVCARKRKTFVLVDTGSVYGFGWMGFGSLGFPDRGV 301 (375)
Q Consensus 223 ~~lt~~g~v~~~G~n~~gqlg~~~~~~-~~~p~~i~~~~~~~i~~i~~g~~~~~~l~~~g~vy~~G~n~~gqlg~~~~~~ 301 (375)
++|+++|+||+||.|.+||||.+.... ...|+++..+.. +|++|+||.+|+++|+++|+||+||.|.++|||.+.
T Consensus 307 ~alt~~G~v~~wG~n~~GqLG~g~~~~~~~~p~~v~~l~~-~v~~ia~G~~hs~alt~~G~v~~wG~n~~GqLG~g~--- 382 (423)
T 3mvd_K 307 VILTTDLKCSVVGRPEYGRLGLGDVKDVVEKPTIVKKLTE-KIVSVGCGEVCSYAVTIDGKLYSWGSGVNNQLGVGD--- 382 (423)
T ss_dssp EEEETTCCEEEEECCGGGTTCSSSCCSCEEEEEECTTCCS-CEEEEEEETTEEEEEETTSCEEEEECCTTSCSSSSS---
T ss_pred EEEeCCCcEEEEECCCCCCCCCCCccccccCceEeccCCC-CEEEEEcCCCeEEEEcCCCCEEEECCCCCCCCCCCC---
Confidence 999999999999999999999998765 457888887766 899999999999999999999999999999999987
Q ss_pred CCceecceEcCc--cCCCcEEEEEeCCCceEEEEcCCC
Q 017198 302 SDKVLRPRILDS--LRAHHVSQISTGLYHTVVVTDRGR 337 (375)
Q Consensus 302 ~~~~~~p~~~~~--~~~~~i~~i~~G~~h~~~l~~~g~ 337 (375)
......|+++.. +.+.+|++|+||..|+++|+++++
T Consensus 383 ~~~~~~P~~v~~~~~~~~~v~~va~G~~ht~~l~~~~k 420 (423)
T 3mvd_K 383 GDDELEPIVVVSKNTQGKHMLLASGGGQHAIFLVKADK 420 (423)
T ss_dssp SCCEEEEEECCSTTTTTCCEEEEEECSSEEEEEEECC-
T ss_pred CCCcccCeEEeCcccCCCEEEEEEECCCcEEEEEcccc
Confidence 455678999885 677889999999999999999875
No 10
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.8e-61 Score=460.79 Aligned_cols=324 Identities=21% Similarity=0.326 Sum_probs=272.2
Q ss_pred CeeeecCCeeEEE-eCCcEEEEeCCCCCccCCCCCCCe----------------------eeeeeeec---CC---CCCC
Q 017198 1 MQITTGRYHTLLI-SNSSVFSCGSSLCGVLGHGPETTQ----------------------CVSFTRIN---FP---SAAH 51 (375)
Q Consensus 1 v~i~~G~~~~~~l-~~g~l~~wG~n~~g~Lg~~~~~~~----------------------~~~~~~~~---~~---~~~~ 51 (375)
++|+||..|+++| +||+||+||.|.+||||.+..... ...|.++. ++ ...+
T Consensus 70 ~~va~G~~Ht~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~v~~~~l~~~~~~~~ 149 (473)
T 3of7_A 70 ISFAVGGMHTLALDEESNVWSWGCNDVGALGRDTSNAKEQLKDMDADDSSDDEDGDLNELESTPAKIPRESFPPLAEGHK 149 (473)
T ss_dssp EEEEECSSEEEEEETTCCEEEEECCTTSTTCSCCC---------------------CCHHHHSCEECCGGGCHHHHTTCC
T ss_pred EEEEeCCCeEEEEecCCeEEEeECCCCCCCCCCCcccccccccccccccCccccccccccccCceecccccCCcccCCCc
Confidence 4799999999999 999999999999999999876541 23455554 33 3469
Q ss_pred EEEEecCCceEEEEEcCCcEEEeeC--CCCCcccCCCCC-CceecCEEccccCCcCeEEEEccCCeEEEEEcCCCEEEEe
Q 017198 52 VVQVSASENHAAFVLQSGQVFTCGD--NSSFCCGHRDTN-RPIFRPRLVEALKGVPCKQVTAGLNFTGFLTIRGHVHTCG 128 (375)
Q Consensus 52 i~~i~~g~~~~~~lt~~g~vy~~G~--n~~gqlg~~~~~-~~~~~p~~i~~~~~~~i~~v~~g~~~~~~lt~~g~v~~~G 128 (375)
|++|+||..|+++|+++|+||+||. +..||||..... .....|..+..+.+.+|++|+||..|+++|+++|+||+||
T Consensus 150 i~~va~G~~hs~alt~~G~vy~wG~n~~~~GqLG~~~~~~~~~~~P~~v~~l~~~~i~~va~G~~hs~alt~~G~v~~wG 229 (473)
T 3of7_A 150 VVQLAATDNMSCALFSNGEVYAWGTFRCNEGILGFYQDKIKIQKTPWKVPTFSKYNIVQLAPGKDHILFLDEEGMVFAWG 229 (473)
T ss_dssp EEEEEECSSEEEEEETTSCEEEEECEEETTEEEESBTTTBSCEEEEEECCCCCSSCEEEEEECSSEEEEEETTSCEEEEE
T ss_pred EEEEEccCCEEEEEeCCCeEEEeeCCcCCCCccCCCCCCCccccCcEEccccCCCCEEEEEecCCeEEEEeCCCeEEEEe
Confidence 9999999999999999999999998 678999985443 4567899999888888999999999999999999999999
Q ss_pred CCCCCcccCCCCCC----CCcceeecCCCCCCCEEEEEeCCCeEEEEECCCcEEEEeCCCCCccCCCCCCC----ccCce
Q 017198 129 SNTHGQLGHGDTLD----RPTPKSIAPLEEVGSVVQIAAGPSYMLAVTGNGVVYSFGSGSNFCLGHGEQHD----ELQPR 200 (375)
Q Consensus 129 ~n~~g~lg~~~~~~----~~~p~~~~~~~~~~~i~~i~~g~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~----~~~p~ 200 (375)
.|.+||||.+.... ...|..+. ..+|++|+||.+|+++|+++|+||+||.|.+||||.+.... ...|+
T Consensus 230 ~n~~GqLG~~~~~~~~~~~~~p~~~~----~~~v~~Ia~G~~hs~alt~~G~v~~wG~n~~GqlG~~~~~~~~~~~~~P~ 305 (473)
T 3of7_A 230 NGQQNQLGRKVMERFRLKTLDPRPFG----LRHVKYIASGENHCFALTKDNKLVSWGLNQFGQCGVSEDVEDGALVTKPK 305 (473)
T ss_dssp CCTTSTTSSCCCGGGTTTTCSCEECS----CCSEEEEEECSSEEEEEETTSCEEEEEECTTSTTCCCSCCCTTCEEEEEE
T ss_pred CCCCCCCCCCccccccccccCceecC----CcceEEEecCCCeEEEEecCCCEEEeCCCCCCCcCCCCcccCCceeeccc
Confidence 99999999886533 33455543 26899999999999999999999999999999999987642 34677
Q ss_pred eeeccccCCccEEEEEcCCCeEEEEeCCCCEEEEeCCCCCCCCCCCCC--------------CcccCeeccCCCCCceEE
Q 017198 201 AIQTFRRKGIHVVRVSAGDEHVVALDSSGYVYTWGKGYCGALGHGDEI--------------DKTLPEPLSSLKSHLAVQ 266 (375)
Q Consensus 201 ~i~~~~~~~~~i~~i~~g~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~--------------~~~~p~~i~~~~~~~i~~ 266 (375)
++..+ ...+|++|+||..|+++|+++|+||+||.|.+||||.+... ....|.++..+. +|++
T Consensus 306 ~v~~~--~~~~i~~ia~G~~hs~~lt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~~~~P~~v~~~~--~v~~ 381 (473)
T 3of7_A 306 RLALP--DNVVIRSIAAGEHHSLILSQDGDLYSCGRLDMFEVGIPKDNLPEYTYKDVHGKARAVPLPTKLNNVP--KFKS 381 (473)
T ss_dssp ECCCC--TTCCEEEEEECSSEEEEEETTSCEEEEEECTTCTTCCCGGGCCTTCEECTTSCEEEEEEEEECCSSC--CEEE
T ss_pred ccccc--CCccEEEEEeCCCeEEEEeCCCeEEEEECCCCCccCCCccccccccccccCCceeeeccCcccCCCC--ceEE
Confidence 77654 34589999999999999999999999999999999986531 123555665433 6999
Q ss_pred EEecCCcEEEEEcCCcEEEEeCCCCCCCCCCCCCCCCceecceEcC--ccCCCcEEEEEeCCCceEEEEc
Q 017198 267 VCARKRKTFVLVDTGSVYGFGWMGFGSLGFPDRGVSDKVLRPRILD--SLRAHHVSQISTGLYHTVVVTD 334 (375)
Q Consensus 267 i~~g~~~~~~l~~~g~vy~~G~n~~gqlg~~~~~~~~~~~~p~~~~--~~~~~~i~~i~~G~~h~~~l~~ 334 (375)
|+||.+|+++|+++|+||+||.|.+||||.+. .......|++++ .+.+.+|++|+||..|++++..
T Consensus 382 Ia~G~~hs~al~~~G~vy~wG~n~~GqLG~g~--~~~~~~~P~~v~~~~~~~~~v~~v~cG~~~s~~~~~ 449 (473)
T 3of7_A 382 VAAGSHHSVAVAQNGIAYSWGFGETYAVGLGP--FEDDTEVPTRIKNTATQDHNIILVGCGGQFSVSGGV 449 (473)
T ss_dssp EEECSSEEEEEETTSCEEEEECCTTCTTCCCS--CCSCEEEEEECCCTTTTTEEEEEEEECSSEEEEEEE
T ss_pred EEeCCCeEEEEeCCCcEEEeeCCCCCCCCCCC--CCccccCCeEecccccCCCeEEEEeeCCCeEEEEEe
Confidence 99999999999999999999999999999986 234577899998 4556789999999999999976
No 11
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=100.00 E-value=9.8e-53 Score=372.73 Aligned_cols=252 Identities=21% Similarity=0.265 Sum_probs=211.6
Q ss_pred CcEEEEeCCCCCccCCCCCCCeeeeeeeecCCCCCCEEEEecCCceEEEEEcCCcEEEeeCCCCCcccCCCCCCceecCE
Q 017198 16 SSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSASENHAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPR 95 (375)
Q Consensus 16 g~l~~wG~n~~g~Lg~~~~~~~~~~~~~~~~~~~~~i~~i~~g~~~~~~lt~~g~vy~~G~n~~gqlg~~~~~~~~~~p~ 95 (375)
.+||+||+|...++. +.|+. ...+|++|+||..|+++|+ ||+||+||.|.+||||...
T Consensus 2 ~~v~~WG~n~~~~~~----------~~p~~--~~~~i~~ia~G~~h~~~l~-~G~v~~wG~n~~Gqlg~p~--------- 59 (282)
T 3qhy_B 2 TSVVAWGGNNDWGEA----------TVPAE--AQSGVDAIAGGYFHGLALK-GGKVLGWGANLNGQLTMPA--------- 59 (282)
T ss_dssp CEEEEECSCCTTSTT----------CCCGG--GSSSCCEEEECSSEEEEEE-TTEEEEEECCSSSTTSCCG---------
T ss_pred eEEEEeCCCCCcCcc----------cCCcc--ccCCCcEEEeCCCeEEEEE-CCEEEEEeCCCCCCCCCCc---------
Confidence 369999999755432 22222 2338999999999999998 9999999999999998421
Q ss_pred EccccCCcCeEEEEccCCeEEEEEcCCCEEEEeCCCCCcccCCCCCCCCcceeecCCCCCCCEEEEEeCCCeEEEEECCC
Q 017198 96 LVEALKGVPCKQVTAGLNFTGFLTIRGHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGPSYMLAVTGNG 175 (375)
Q Consensus 96 ~i~~~~~~~i~~v~~g~~~~~~lt~~g~v~~~G~n~~g~lg~~~~~~~~~p~~~~~~~~~~~i~~i~~g~~~~~~lt~~g 175 (375)
. ...+|++|+||..|+++|+ +|+||+||.|.++|||. |..+. .+|++|+||.+|+++|+ +|
T Consensus 60 ~----~~~~i~~ia~G~~hs~~l~-~G~v~~wG~n~~Gqlg~--------P~~~~-----~~v~~ia~G~~hs~al~-~G 120 (282)
T 3qhy_B 60 A----TQSGVDAIAAGNYHSLALK-DGEVIAWGGNEDGQTTV--------PAEAR-----SGVDAIAAGAWASYALK-DG 120 (282)
T ss_dssp G----GGSCCCEEEECSSEEEEEE-TTEEEEEECCTTSTTCC--------CGGGS-----SSEEEEEEETTEEEEEE-TT
T ss_pred c----CCCCEEEEEeCCCEEEEEE-CCEEEEeeCCCCCCCCC--------CcccC-----CCeEEEECcCCEEEEEe-CC
Confidence 1 1237899999999999996 99999999999999984 44332 58999999999999999 99
Q ss_pred cEEEEeCCCCCccCCCCCCCccCceeeeccccCCccEEEEEcCCCeEEEEeCCCCEEEEeCCCCCCCCCCCCCCcccCee
Q 017198 176 VVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGDEHVVALDSSGYVYTWGKGYCGALGHGDEIDKTLPEP 255 (375)
Q Consensus 176 ~v~~~G~n~~gqlg~~~~~~~~~p~~i~~~~~~~~~i~~i~~g~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~p~~ 255 (375)
+||+||.|.++||+. |.. ...+|++|+||..|+++|+ +|+||+||.|.++||+. |.+
T Consensus 121 ~v~~wG~n~~gqlg~--------~~~------~~~~i~~i~~G~~~~~~l~-~G~v~~wG~n~~gqlg~--------p~~ 177 (282)
T 3qhy_B 121 KVIAWGDDSDGQTTV--------PAE------AQSGVTALDGGVYTALAVK-NGGVIAWGDNYFGQTTV--------PAE 177 (282)
T ss_dssp EEEEEECCTTSTTSC--------CGG------GGSSEEEEEECSSEEEEEE-TTEEEEEECCTTSTTSC--------CGG
T ss_pred eEEEecCCCCCcCCC--------Ccc------CCCCeEEEEcccCEEEEEE-CCEEEEecCCCCCCCCC--------cee
Confidence 999999999999973 111 1227999999999999999 89999999999999983 333
Q ss_pred ccCCCCCceEEEEecCCcEEEEEcCCcEEEEeCCCCCCCCCCCCCCCCceecceEcCccCCCcEEEEEeCCCceEEEEcC
Q 017198 256 LSSLKSHLAVQVCARKRKTFVLVDTGSVYGFGWMGFGSLGFPDRGVSDKVLRPRILDSLRAHHVSQISTGLYHTVVVTDR 335 (375)
Q Consensus 256 i~~~~~~~i~~i~~g~~~~~~l~~~g~vy~~G~n~~gqlg~~~~~~~~~~~~p~~~~~~~~~~i~~i~~G~~h~~~l~~~ 335 (375)
+ ..+|++|+||.+|+++| ++|+||+||.|.++|||.+.. .+ .+|++|+||..|+++|+ +
T Consensus 178 ~----~~~v~~i~~G~~hs~al-~~G~v~~wG~n~~gqlg~p~~-------------~~--~~v~~i~~G~~h~~al~-~ 236 (282)
T 3qhy_B 178 A----QSGVDDVAGGIFHSLAL-KDGKVIAWGDNRYKQTTVPTE-------------AL--SGVSAIASGEWYSLALK-N 236 (282)
T ss_dssp G----GSSEEEEEECSSEEEEE-ETTEEEEEECCTTSTTCCCGG-------------GG--SSCCEEEECSSCEEEEE-T
T ss_pred c----CCCeEEEEecCCEEEEE-ECCeEEEEECCCCCCCCCCcc-------------cC--CCceEEEcCCCEEEEEE-C
Confidence 3 34699999999999999 999999999999999996531 11 26999999999999999 9
Q ss_pred CCEEEeeCCCCCCCCcC
Q 017198 336 GRLFGFGDNERAQLGHD 352 (375)
Q Consensus 336 g~v~~wG~n~~gqlG~g 352 (375)
|+||+||+|.++|++..
T Consensus 237 g~v~~wG~n~~gq~~v~ 253 (282)
T 3qhy_B 237 GKVIAWGSSRTAPSSVQ 253 (282)
T ss_dssp TEEEEESTTCCCCGGGS
T ss_pred CEEEEecCCCCccccCC
Confidence 99999999999999874
No 12
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=100.00 E-value=2.1e-52 Score=370.61 Aligned_cols=250 Identities=22% Similarity=0.239 Sum_probs=210.9
Q ss_pred CeeeecCCeeEEEeCCcEEEEeCCCCCccCCCCCCCeeeeeeeecCCCCCCEEEEecCCceEEEEEcCCcEEEeeCCCCC
Q 017198 1 MQITTGRYHTLLISNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSASENHAAFVLQSGQVFTCGDNSSF 80 (375)
Q Consensus 1 v~i~~G~~~~~~l~~g~l~~wG~n~~g~Lg~~~~~~~~~~~~~~~~~~~~~i~~i~~g~~~~~~lt~~g~vy~~G~n~~g 80 (375)
++|+||..|+++|+||+||+||.|.+||||.+. +...+|++|+||..|+++|+ ||+||+||.|.+|
T Consensus 27 ~~ia~G~~h~~~l~~G~v~~wG~n~~Gqlg~p~-------------~~~~~i~~ia~G~~hs~~l~-~G~v~~wG~n~~G 92 (282)
T 3qhy_B 27 DAIAGGYFHGLALKGGKVLGWGANLNGQLTMPA-------------ATQSGVDAIAAGNYHSLALK-DGEVIAWGGNEDG 92 (282)
T ss_dssp CEEEECSSEEEEEETTEEEEEECCSSSTTSCCG-------------GGGSCCCEEEECSSEEEEEE-TTEEEEEECCTTS
T ss_pred cEEEeCCCeEEEEECCEEEEEeCCCCCCCCCCc-------------cCCCCEEEEEeCCCEEEEEE-CCEEEEeeCCCCC
Confidence 589999999999999999999999999999521 11238999999999999996 9999999999999
Q ss_pred cccCCCCCCceecCEEccccCCcCeEEEEccCCeEEEEEcCCCEEEEeCCCCCcccCCCCCCCCcceeecCCCCCCCEEE
Q 017198 81 CCGHRDTNRPIFRPRLVEALKGVPCKQVTAGLNFTGFLTIRGHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQ 160 (375)
Q Consensus 81 qlg~~~~~~~~~~p~~i~~~~~~~i~~v~~g~~~~~~lt~~g~v~~~G~n~~g~lg~~~~~~~~~p~~~~~~~~~~~i~~ 160 (375)
|||. |..+ ..+|++|+||.+|+++|+ +|+||+||.|.++||+. |.. . ..+|++
T Consensus 93 qlg~---------P~~~----~~~v~~ia~G~~hs~al~-~G~v~~wG~n~~gqlg~--------~~~--~---~~~i~~ 145 (282)
T 3qhy_B 93 QTTV---------PAEA----RSGVDAIAAGAWASYALK-DGKVIAWGDDSDGQTTV--------PAE--A---QSGVTA 145 (282)
T ss_dssp TTCC---------CGGG----SSSEEEEEEETTEEEEEE-TTEEEEEECCTTSTTSC--------CGG--G---GSSEEE
T ss_pred CCCC---------Cccc----CCCeEEEECcCCEEEEEe-CCeEEEecCCCCCcCCC--------Ccc--C---CCCeEE
Confidence 9985 3222 237999999999999999 99999999999999973 211 1 267999
Q ss_pred EEeCCCeEEEEECCCcEEEEeCCCCCccCCCCCCCccCceeeeccccCCccEEEEEcCCCeEEEEeCCCCEEEEeCCCCC
Q 017198 161 IAAGPSYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGDEHVVALDSSGYVYTWGKGYCG 240 (375)
Q Consensus 161 i~~g~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~p~~i~~~~~~~~~i~~i~~g~~~~~~lt~~g~v~~~G~n~~g 240 (375)
|+||.+|+++|+ +|+||+||.|.++|++. |..+ ..+|++|+||..|+++| ++|+||+||.|.++
T Consensus 146 i~~G~~~~~~l~-~G~v~~wG~n~~gqlg~--------p~~~------~~~v~~i~~G~~hs~al-~~G~v~~wG~n~~g 209 (282)
T 3qhy_B 146 LDGGVYTALAVK-NGGVIAWGDNYFGQTTV--------PAEA------QSGVDDVAGGIFHSLAL-KDGKVIAWGDNRYK 209 (282)
T ss_dssp EEECSSEEEEEE-TTEEEEEECCTTSTTSC--------CGGG------GSSEEEEEECSSEEEEE-ETTEEEEEECCTTS
T ss_pred EEcccCEEEEEE-CCEEEEecCCCCCCCCC--------ceec------CCCeEEEEecCCEEEEE-ECCeEEEEECCCCC
Confidence 999999999999 89999999999999972 2222 23799999999999999 89999999999999
Q ss_pred CCCCCCCCCcccCeeccCCCCCceEEEEecCCcEEEEEcCCcEEEEeCCCCCCCCCCCCCCCCceecceEcCccCCCcEE
Q 017198 241 ALGHGDEIDKTLPEPLSSLKSHLAVQVCARKRKTFVLVDTGSVYGFGWMGFGSLGFPDRGVSDKVLRPRILDSLRAHHVS 320 (375)
Q Consensus 241 qlg~~~~~~~~~p~~i~~~~~~~i~~i~~g~~~~~~l~~~g~vy~~G~n~~gqlg~~~~~~~~~~~~p~~~~~~~~~~i~ 320 (375)
|||.+. +. ..+|++|+||.+|+++|+ +|+||+||.|.++|++.. ..|+
T Consensus 210 qlg~p~--------~~----~~~v~~i~~G~~h~~al~-~g~v~~wG~n~~gq~~v~-------------------~~v~ 257 (282)
T 3qhy_B 210 QTTVPT--------EA----LSGVSAIASGEWYSLALK-NGKVIAWGSSRTAPSSVQ-------------------SGVS 257 (282)
T ss_dssp TTCCCG--------GG----GSSCCEEEECSSCEEEEE-TTEEEEESTTCCCCGGGS-------------------SCEE
T ss_pred CCCCCc--------cc----CCCceEEEcCCCEEEEEE-CCEEEEecCCCCccccCC-------------------CCcE
Confidence 998532 11 135899999999999999 999999999999887742 1699
Q ss_pred EEEeCCCceEEEEcCCCEE
Q 017198 321 QISTGLYHTVVVTDRGRLF 339 (375)
Q Consensus 321 ~i~~G~~h~~~l~~~g~v~ 339 (375)
+|+||..|+++|+++++.+
T Consensus 258 ~iaaG~~h~~al~~~~~~~ 276 (282)
T 3qhy_B 258 SIEAGPNAAYALKGGSGSG 276 (282)
T ss_dssp EEEECSSCEEEEEC-----
T ss_pred EEEECcCeEEEEecCCCCC
Confidence 9999999999999987654
No 13
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=97.19 E-value=0.14 Score=47.16 Aligned_cols=240 Identities=10% Similarity=0.044 Sum_probs=137.1
Q ss_pred CCEEEEecCCceEEEEEcCCcEEEeeCCCCCcccCCCCCCceecCEEccccCCcCeEEEEccCCeEEEEEcCCCEEEEeC
Q 017198 50 AHVVQVSASENHAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGLNFTGFLTIRGHVHTCGS 129 (375)
Q Consensus 50 ~~i~~i~~g~~~~~~lt~~g~vy~~G~n~~gqlg~~~~~~~~~~p~~i~~~~~~~i~~v~~g~~~~~~lt~~g~v~~~G~ 129 (375)
..|..++......+.-..||.|.+|-....-. ...+. .....|..++......+.-+.+|.|..|-.
T Consensus 174 ~~v~~l~~~~~~l~sg~~dg~i~vwd~~~~~~------------~~~~~-~h~~~v~~l~~~~~~l~s~s~dg~i~vwd~ 240 (435)
T 1p22_A 174 GSVLCLQYDERVIITGSSDSTVRVWDVNTGEM------------LNTLI-HHCEAVLHLRFNNGMMVTCSKDRSIAVWDM 240 (435)
T ss_dssp SCEEEEECCSSEEEEEETTSCEEEEESSSCCE------------EEEEC-CCCSCEEEEECCTTEEEEEETTSCEEEEEC
T ss_pred CcEEEEEECCCEEEEEcCCCeEEEEECCCCcE------------EEEEc-CCCCcEEEEEEcCCEEEEeeCCCcEEEEeC
Confidence 37888888777777778899999996554110 11111 123367788877777788889999999954
Q ss_pred CCCCcccCCCCCCCCcc-eeecCCCCCCCEEEEEeCCCeEEEEECCCcEEEEeCCCCCccCCCCCCCccCceeeeccccC
Q 017198 130 NTHGQLGHGDTLDRPTP-KSIAPLEEVGSVVQIAAGPSYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRK 208 (375)
Q Consensus 130 n~~g~lg~~~~~~~~~p-~~~~~~~~~~~i~~i~~g~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~p~~i~~~~~~ 208 (375)
..... ..+ ..+. .....|..++....+.+.-..+|.|..|-.... ..+..+...
T Consensus 241 ~~~~~---------~~~~~~~~--~~~~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~--------------~~~~~~~~~ 295 (435)
T 1p22_A 241 ASPTD---------ITLRRVLV--GHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTC--------------EFVRTLNGH 295 (435)
T ss_dssp SSSSC---------CEEEEEEC--CCSSCEEEEEEETTEEEEEETTSEEEEEETTTC--------------CEEEEEECC
T ss_pred CCCCC---------ceeeeEec--CCCCcEEEEEeCCCEEEEEeCCCeEEEEECCcC--------------cEEEEEcCC
Confidence 32110 000 1111 112578888887777778888999999965321 112222223
Q ss_pred CccEEEEEcCCCeEEEEeCCCCEEEEeCCCCCCCCCCCCCCcccCeeccCCCCCceEEEEecCCcEEEEEcCCcEEEEeC
Q 017198 209 GIHVVRVSAGDEHVVALDSSGYVYTWGKGYCGALGHGDEIDKTLPEPLSSLKSHLAVQVCARKRKTFVLVDTGSVYGFGW 288 (375)
Q Consensus 209 ~~~i~~i~~g~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~p~~i~~~~~~~i~~i~~g~~~~~~l~~~g~vy~~G~ 288 (375)
...|..++......+.-..+|.|..|-...... ...+ ......|..++......+.-..||.|..|-.
T Consensus 296 ~~~v~~~~~~~~~l~~g~~dg~i~iwd~~~~~~-----------~~~~-~~h~~~v~~~~~~~~~l~sg~~dg~i~vwd~ 363 (435)
T 1p22_A 296 KRGIACLQYRDRLVVSGSSDNTIRLWDIECGAC-----------LRVL-EGHEELVRCIRFDNKRIVSGAYDGKIKVWDL 363 (435)
T ss_dssp SSCEEEEEEETTEEEEEETTSCEEEEETTTCCE-----------EEEE-CCCSSCEEEEECCSSEEEEEETTSCEEEEEH
T ss_pred CCcEEEEEeCCCEEEEEeCCCeEEEEECCCCCE-----------EEEE-eCCcCcEEEEEecCCEEEEEeCCCcEEEEEC
Confidence 335777777667777778899999996532110 0111 1123457777776666666678999999974
Q ss_pred CCCCCCCCCCCCCCCceecceEcCccCCCcEEEEEeCCCceEEEEcCCCEEEeeCCC
Q 017198 289 MGFGSLGFPDRGVSDKVLRPRILDSLRAHHVSQISTGLYHTVVVTDRGRLFGFGDNE 345 (375)
Q Consensus 289 n~~gqlg~~~~~~~~~~~~p~~~~~~~~~~i~~i~~G~~h~~~l~~~g~v~~wG~n~ 345 (375)
.......... . ......+. -....|..++......+.-..||.|..|--..
T Consensus 364 ~~~~~~~~~~----~-~~~~~~~~-~h~~~v~~l~~~~~~l~s~s~Dg~i~iwd~~~ 414 (435)
T 1p22_A 364 VAALDPRAPA----G-TLCLRTLV-EHSGRVFRLQFDEFQIVSSSHDDTILIWDFLN 414 (435)
T ss_dssp HHHTSTTSCT----T-TTEEEEEC-CCSSCCCCEEECSSCEEECCSSSEEEEEC---
T ss_pred CCCCCccccc----c-chheeecc-CCCCCeEEEEeCCCEEEEEeCCCEEEEEECCC
Confidence 3211110000 0 00011111 11234566666555555556789999995443
No 14
>4gbf_A Phikz131; 7-bladed beta-propeller, possibly participates in binding of phage to the HOST cell, viral protein; 1.95A {Pseudomonas phage phikz}
Probab=96.79 E-value=0.0029 Score=52.50 Aligned_cols=66 Identities=17% Similarity=0.155 Sum_probs=56.2
Q ss_pred eeecCCeeEEE-eCCcEEEEeCCCCCccCCCCCCCeeeeeeeecCCCCCCEEEEecCCceEEEEEcCCcEEEeeCCCCCc
Q 017198 3 ITTGRYHTLLI-SNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSASENHAAFVLQSGQVFTCGDNSSFC 81 (375)
Q Consensus 3 i~~G~~~~~~l-~~g~l~~wG~n~~g~Lg~~~~~~~~~~~~~~~~~~~~~i~~i~~g~~~~~~lt~~g~vy~~G~n~~gq 81 (375)
|+.-+.|..++ -|++|+.+|++++||+-+....- ++.++.+|.+|++-+..-..+..||+.....
T Consensus 314 VsG~y~H~vvi~gd~el~sFG~~sNGQ~~ip~tag--------------Pfla~~AG~~fTVTVn~~nyv~FWGDSPDNS 379 (400)
T 4gbf_A 314 VSGLYTHYTVMYGDGQIAFFGNNDNGQCDVDDHAG--------------PYIQLAAGHNFTVTVNTLNQVMFWGDSPDNS 379 (400)
T ss_dssp CBCSSSEEEC-CTTTCCCEEECCTTSTTCCCGGGC--------------CEEEEEECSSEEEEEETTCCEEEEECCTTST
T ss_pred ccccccceEEEecCceeEEeccCCCCceecCCCcc--------------hHHhHhccCCeEEEEeceeeEEEecCCCCcc
Confidence 44458899999 99999999999999998877666 7899999999999999999999999776544
Q ss_pred c
Q 017198 82 C 82 (375)
Q Consensus 82 l 82 (375)
|
T Consensus 380 L 380 (400)
T 4gbf_A 380 L 380 (400)
T ss_dssp T
T ss_pred e
Confidence 3
No 15
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=96.77 E-value=0.32 Score=44.61 Aligned_cols=228 Identities=11% Similarity=0.030 Sum_probs=137.5
Q ss_pred CEEEEecCCceEEEEEcCCcEEEeeCCCCCcccCCCCCCceecCEEccccCCcCeEEEEccCCeEEEEEcCCCEEEEeCC
Q 017198 51 HVVQVSASENHAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGLNFTGFLTIRGHVHTCGSN 130 (375)
Q Consensus 51 ~i~~i~~g~~~~~~lt~~g~vy~~G~n~~gqlg~~~~~~~~~~p~~i~~~~~~~i~~v~~g~~~~~~lt~~g~v~~~G~n 130 (375)
.|..++......+.-..||.|..|-....- ....+. .....|..++......+.-..||.|..|-..
T Consensus 135 ~v~~~~~d~~~l~~g~~dg~i~iwd~~~~~------------~~~~~~-~h~~~v~~l~~~~~~l~sg~~dg~i~vwd~~ 201 (435)
T 1p22_A 135 GVYCLQYDDQKIVSGLRDNTIKIWDKNTLE------------CKRILT-GHTGSVLCLQYDERVIITGSSDSTVRVWDVN 201 (435)
T ss_dssp CEEEEECCSSEEEEEESSSCEEEEESSSCC------------EEEEEC-CCSSCEEEEECCSSEEEEEETTSCEEEEESS
T ss_pred cEEEEEECCCEEEEEeCCCeEEEEeCCCCe------------EEEEEc-CCCCcEEEEEECCCEEEEEcCCCeEEEEECC
Confidence 577777777777888889999999544310 011111 1233677787766667777889999999543
Q ss_pred CCCcccCCCCCCCCcceeecCCCCCCCEEEEEeCCCeEEEEECCCcEEEEeCCCCCccCCCCCCCccCceeeeccccCCc
Q 017198 131 THGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGPSYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGI 210 (375)
Q Consensus 131 ~~g~lg~~~~~~~~~p~~~~~~~~~~~i~~i~~g~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~p~~i~~~~~~~~ 210 (375)
.... ...+.. ....|..++......+.-..+|.|..|-..... .......+.....
T Consensus 202 ~~~~-----------~~~~~~--h~~~v~~l~~~~~~l~s~s~dg~i~vwd~~~~~-----------~~~~~~~~~~~~~ 257 (435)
T 1p22_A 202 TGEM-----------LNTLIH--HCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPT-----------DITLRRVLVGHRA 257 (435)
T ss_dssp SCCE-----------EEEECC--CCSCEEEEECCTTEEEEEETTSCEEEEECSSSS-----------CCEEEEEECCCSS
T ss_pred CCcE-----------EEEEcC--CCCcEEEEEEcCCEEEEeeCCCcEEEEeCCCCC-----------CceeeeEecCCCC
Confidence 2111 111111 125788888888888888899999999653211 1111111222333
Q ss_pred cEEEEEcCCCeEEEEeCCCCEEEEeCCCCCCCCCCCCCCcccCeeccCCCCCceEEEEecCCcEEEEEcCCcEEEEeCCC
Q 017198 211 HVVRVSAGDEHVVALDSSGYVYTWGKGYCGALGHGDEIDKTLPEPLSSLKSHLAVQVCARKRKTFVLVDTGSVYGFGWMG 290 (375)
Q Consensus 211 ~i~~i~~g~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~p~~i~~~~~~~i~~i~~g~~~~~~l~~~g~vy~~G~n~ 290 (375)
.|..++......+.-..+|.|..|-...... ...+. .....|..++......+.-..||.|..|-...
T Consensus 258 ~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~-----------~~~~~-~~~~~v~~~~~~~~~l~~g~~dg~i~iwd~~~ 325 (435)
T 1p22_A 258 AVNVVDFDDKYIVSASGDRTIKVWNTSTCEF-----------VRTLN-GHKRGIACLQYRDRLVVSGSSDNTIRLWDIEC 325 (435)
T ss_dssp CEEEEEEETTEEEEEETTSEEEEEETTTCCE-----------EEEEE-CCSSCEEEEEEETTEEEEEETTSCEEEEETTT
T ss_pred cEEEEEeCCCEEEEEeCCCeEEEEECCcCcE-----------EEEEc-CCCCcEEEEEeCCCEEEEEeCCCeEEEEECCC
Confidence 6777777667777778899999996532110 01111 12334677777667777777899999997532
Q ss_pred CCCCCCCCCCCCCceecceEcCccCCCcEEEEEeCCCceEEEEcCCCEEEee
Q 017198 291 FGSLGFPDRGVSDKVLRPRILDSLRAHHVSQISTGLYHTVVVTDRGRLFGFG 342 (375)
Q Consensus 291 ~gqlg~~~~~~~~~~~~p~~~~~~~~~~i~~i~~G~~h~~~l~~~g~v~~wG 342 (375)
.. ....+. .....|..++......+.-..||.|..|-
T Consensus 326 ~~--------------~~~~~~-~h~~~v~~~~~~~~~l~sg~~dg~i~vwd 362 (435)
T 1p22_A 326 GA--------------CLRVLE-GHEELVRCIRFDNKRIVSGAYDGKIKVWD 362 (435)
T ss_dssp CC--------------EEEEEC-CCSSCEEEEECCSSEEEEEETTSCEEEEE
T ss_pred CC--------------EEEEEe-CCcCcEEEEEecCCEEEEEeCCCcEEEEE
Confidence 11 011111 12235777777556666666889999994
No 16
>4gbf_A Phikz131; 7-bladed beta-propeller, possibly participates in binding of phage to the HOST cell, viral protein; 1.95A {Pseudomonas phage phikz}
Probab=96.42 E-value=0.006 Score=50.70 Aligned_cols=85 Identities=25% Similarity=0.259 Sum_probs=67.7
Q ss_pred CceEEEEecCCcEEEEEcCCcEEEEeCCCCCCCCCCCCCCCCceecceEcCccCCCcEEEEEeCCCceEEEEcCCCEEEe
Q 017198 262 HLAVQVCARKRKTFVLVDTGSVYGFGWMGFGSLGFPDRGVSDKVLRPRILDSLRAHHVSQISTGLYHTVVVTDRGRLFGF 341 (375)
Q Consensus 262 ~~i~~i~~g~~~~~~l~~~g~vy~~G~n~~gqlg~~~~~~~~~~~~p~~~~~~~~~~i~~i~~G~~h~~~l~~~g~v~~w 341 (375)
.+|..|+....|.+++--+++||.+|++++||+-.+.. .....++++|..+++-+..-..+--|
T Consensus 309 n~i~~VsG~y~H~vvi~gd~el~sFG~~sNGQ~~ip~t----------------agPfla~~AG~~fTVTVn~~nyv~FW 372 (400)
T 4gbf_A 309 NPIGGVSGLYTHYTVMYGDGQIAFFGNNDNGQCDVDDH----------------AGPYIQLAAGHNFTVTVNTLNQVMFW 372 (400)
T ss_dssp SCCCCCBCSSSEEEC-CTTTCCCEEECCTTSTTCCCGG----------------GCCEEEEEECSSEEEEEETTCCEEEE
T ss_pred CccccccccccceEEEecCceeEEeccCCCCceecCCC----------------cchHHhHhccCCeEEEEeceeeEEEe
Confidence 35778888899999999999999999999999987641 12578899999999999999999999
Q ss_pred eCCCCCCC---CcCCCCCcccceE
Q 017198 342 GDNERAQL---GHDTLRGCLEPTE 362 (375)
Q Consensus 342 G~n~~gql---G~g~~~~~~~p~~ 362 (375)
|+.-.-.| |.++.....+|++
T Consensus 373 GDSPDNSLLwnGr~t~~~~~~~~~ 396 (400)
T 4gbf_A 373 GDSPDNSLLWNGRGTRVKHIEPTP 396 (400)
T ss_dssp ECCTTSTTCCTTCCSBCCCCCCCC
T ss_pred cCCCCcceeecCccceeeeccCCC
Confidence 98754333 4556667777765
No 17
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=96.39 E-value=0.57 Score=42.94 Aligned_cols=228 Identities=8% Similarity=-0.040 Sum_probs=136.5
Q ss_pred CEEEEecCCceEEEEEcCCcEEEeeCCCCCcccCCCCCCceecCEEccccCCcCeEEEEccCCeEEEEEcCCCEEEEeCC
Q 017198 51 HVVQVSASENHAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGLNFTGFLTIRGHVHTCGSN 130 (375)
Q Consensus 51 ~i~~i~~g~~~~~~lt~~g~vy~~G~n~~gqlg~~~~~~~~~~p~~i~~~~~~~i~~v~~g~~~~~~lt~~g~v~~~G~n 130 (375)
.|..++......+.-..||.|+.|-..... ....+. .....|..+.......+.-+.+|.|..|-..
T Consensus 161 ~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~------------~~~~~~-~h~~~v~~~~~~~~~l~s~s~dg~i~~wd~~ 227 (445)
T 2ovr_B 161 GVWSSQMRDNIIISGSTDRTLKVWNAETGE------------CIHTLY-GHTSTVRCMHLHEKRVVSGSRDATLRVWDIE 227 (445)
T ss_dssp CEEEEEEETTEEEEEETTSCEEEEETTTTE------------EEEEEC-CCSSCEEEEEEETTEEEEEETTSEEEEEESS
T ss_pred CEEEEEecCCEEEEEeCCCeEEEEECCcCc------------EEEEEC-CCCCcEEEEEecCCEEEEEeCCCEEEEEECC
Confidence 677777767777777889999999654311 011111 1233567777767777788889999999543
Q ss_pred CCCcccCCCCCCCCcceeecCCCCCCCEEEEEeCCCeEEEEECCCcEEEEeCCCCCccCCCCCCCccCceeeeccccCCc
Q 017198 131 THGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGPSYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGI 210 (375)
Q Consensus 131 ~~g~lg~~~~~~~~~p~~~~~~~~~~~i~~i~~g~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~p~~i~~~~~~~~ 210 (375)
.... ...+.. ....|..++......+.-..+|.|..|-... ...+..+.....
T Consensus 228 ~~~~-----------~~~~~~--~~~~v~~~~~~~~~l~~~~~dg~i~iwd~~~--------------~~~~~~~~~~~~ 280 (445)
T 2ovr_B 228 TGQC-----------LHVLMG--HVAAVRCVQYDGRRVVSGAYDFMVKVWDPET--------------ETCLHTLQGHTN 280 (445)
T ss_dssp SCCE-----------EEEEEC--CSSCEEEEEECSSCEEEEETTSCEEEEEGGG--------------TEEEEEECCCSS
T ss_pred CCcE-----------EEEEcC--CcccEEEEEECCCEEEEEcCCCEEEEEECCC--------------CcEeEEecCCCC
Confidence 2111 111111 1256777877677777778899999995422 122222222334
Q ss_pred cEEEEEcCCCeEEEEeCCCCEEEEeCCCCCCCCCCCCCCcccCeeccCCCCCceEEEEecCCcEEEEEcCCcEEEEeCCC
Q 017198 211 HVVRVSAGDEHVVALDSSGYVYTWGKGYCGALGHGDEIDKTLPEPLSSLKSHLAVQVCARKRKTFVLVDTGSVYGFGWMG 290 (375)
Q Consensus 211 ~i~~i~~g~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~p~~i~~~~~~~i~~i~~g~~~~~~l~~~g~vy~~G~n~ 290 (375)
.|..+.....+.+.-..+|.|..|-...... ...+ ......+..++......+.-..||.|..|-...
T Consensus 281 ~v~~~~~~~~~l~~~~~d~~i~i~d~~~~~~-----------~~~~-~~~~~~v~~~~~~~~~l~~~~~dg~i~vwd~~~ 348 (445)
T 2ovr_B 281 RVYSLQFDGIHVVSGSLDTSIRVWDVETGNC-----------IHTL-TGHQSLTSGMELKDNILVSGNADSTVKIWDIKT 348 (445)
T ss_dssp CEEEEEECSSEEEEEETTSCEEEEETTTCCE-----------EEEE-CCCCSCEEEEEEETTEEEEEETTSCEEEEETTT
T ss_pred ceEEEEECCCEEEEEeCCCeEEEEECCCCCE-----------EEEE-cCCcccEEEEEEeCCEEEEEeCCCeEEEEECCC
Confidence 6777777667777778899999996532110 0011 112234666666666666777899999997432
Q ss_pred CCCCCCCCCCCCCceecceEcCc--cCCCcEEEEEeCCCceEEEEcCCCEEEeeCC
Q 017198 291 FGSLGFPDRGVSDKVLRPRILDS--LRAHHVSQISTGLYHTVVVTDRGRLFGFGDN 344 (375)
Q Consensus 291 ~gqlg~~~~~~~~~~~~p~~~~~--~~~~~i~~i~~G~~h~~~l~~~g~v~~wG~n 344 (375)
.. ....+.. .....|..++......+.-..||.|..|--.
T Consensus 349 ~~--------------~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~v~iwd~~ 390 (445)
T 2ovr_B 349 GQ--------------CLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLK 390 (445)
T ss_dssp CC--------------EEEEECSTTSCSSCEEEEEECSSEEEEEETTSEEEEEETT
T ss_pred Cc--------------EEEEEccCCCCCCCEEEEEECCCEEEEEeCCCeEEEEECC
Confidence 11 0111111 1233577777766666666788999999644
No 18
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=96.10 E-value=1.2 Score=43.57 Aligned_cols=110 Identities=13% Similarity=0.005 Sum_probs=52.4
Q ss_pred eeEEE-eCCcEEEEeCCCCCccCCCCCCCeeeeeeeecCCCCC--CEEEEec---CCceEEEEEcCCcEEEeeCCCCCcc
Q 017198 9 HTLLI-SNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAA--HVVQVSA---SENHAAFVLQSGQVFTCGDNSSFCC 82 (375)
Q Consensus 9 ~~~~l-~~g~l~~wG~n~~g~Lg~~~~~~~~~~~~~~~~~~~~--~i~~i~~---g~~~~~~lt~~g~vy~~G~n~~gql 82 (375)
|+.++ .+++||++|-......+..... .......+..... .+..+-. ...+..++..+|+||++|-.....+
T Consensus 190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~--~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v 267 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYRNDAFGGSPGG--ITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKT 267 (656)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCS--EEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCE
T ss_pred eEEEEecCCEEEEEecccccccccCCCC--eEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCce
Confidence 45555 5999999996543332211111 1112222222221 2333322 2333467778999999986542211
Q ss_pred cCCCCCCceecCEEccccCCcCeEEEEccCCeEEEEEcCCCEEEEeC
Q 017198 83 GHRDTNRPIFRPRLVEALKGVPCKQVTAGLNFTGFLTIRGHVHTCGS 129 (375)
Q Consensus 83 g~~~~~~~~~~p~~i~~~~~~~i~~v~~g~~~~~~lt~~g~v~~~G~ 129 (375)
-.-+.. ......+..+.. .-..|++++..+|+||++|-
T Consensus 268 ~~yd~~--t~~W~~~~~~~~-------~R~~~s~~~~~dg~iyv~GG 305 (656)
T 1k3i_A 268 SLYDSS--SDSWIPGPDMQV-------ARGYQSSATMSDGRVFTIGG 305 (656)
T ss_dssp EEEEGG--GTEEEECCCCSS-------CCSSCEEEECTTSCEEEECC
T ss_pred EEecCc--CCceeECCCCCc-------cccccceEEecCCeEEEEeC
Confidence 000000 001111111111 22457777777999999987
No 19
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=95.86 E-value=1.1 Score=43.64 Aligned_cols=72 Identities=22% Similarity=0.245 Sum_probs=37.6
Q ss_pred CcEEEEEcCCcEEEEeCCCCCCCCCCCCCCCCceecceEcCccCCCcEEEEE----eCCCceE-EEEcCCCEEEeeCCCC
Q 017198 272 RKTFVLVDTGSVYGFGWMGFGSLGFPDRGVSDKVLRPRILDSLRAHHVSQIS----TGLYHTV-VVTDRGRLFGFGDNER 346 (375)
Q Consensus 272 ~~~~~l~~~g~vy~~G~n~~gqlg~~~~~~~~~~~~p~~~~~~~~~~i~~i~----~G~~h~~-~l~~~g~v~~wG~n~~ 346 (375)
.|++++.-+|+||..|-...+..... ......+.... +.......+. .-.+|+. ++..+|+||+.|-+.+
T Consensus 458 ~~~~~~l~~g~i~v~GG~~~~~~~~~----~~~~~~v~~yd-p~t~~W~~~~~~~~~R~~hs~a~ll~dg~v~v~GG~~~ 532 (656)
T 1k3i_A 458 FHTSVVLPDGSTFITGGQRRGIPFED----STPVFTPEIYV-PEQDTFYKQNPNSIVRVYHSISLLLPDGRVFNGGGGLC 532 (656)
T ss_dssp SCEEEECTTSCEEEECCBSBCCTTCC----CSBCCCCEEEE-GGGTEEEECCCCSSCCCTTEEEEECTTSCEEEEECCCC
T ss_pred cCCeEECCCCCEEEECCcccCcCcCC----CCcccceEEEc-CCCCceeecCCCCCccccccHhhcCCCcEEEecCCCCC
Confidence 57777777999999985443321101 01111122221 1111222222 2246765 4557999999998765
Q ss_pred CC
Q 017198 347 AQ 348 (375)
Q Consensus 347 gq 348 (375)
+.
T Consensus 533 ~~ 534 (656)
T 1k3i_A 533 GD 534 (656)
T ss_dssp TT
T ss_pred CC
Confidence 53
No 20
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=95.67 E-value=0.94 Score=39.16 Aligned_cols=275 Identities=7% Similarity=-0.028 Sum_probs=135.6
Q ss_pred ecCCeeEEE-eCCcEEEEeCCCCCccCCCCCCCeeeeeeeecCCCCCCEEEEecCCc-eEEEEEcCCcEEEeeCCCCCcc
Q 017198 5 TGRYHTLLI-SNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSASEN-HAAFVLQSGQVFTCGDNSSFCC 82 (375)
Q Consensus 5 ~G~~~~~~l-~~g~l~~wG~n~~g~Lg~~~~~~~~~~~~~~~~~~~~~i~~i~~g~~-~~~~lt~~g~vy~~G~n~~gql 82 (375)
.+.-.++++ .||++++.+......+....... ....... .-...|..++.... ..++...||.|..|-......
T Consensus 9 ~~~v~~~~~s~dg~~~~~~~~~~~~~~~~~~~~-~~~~~~~--~h~~~v~~~~~~~~~~~l~~~~dg~i~iw~~~~~~~- 84 (337)
T 1gxr_A 9 SKPAYSFHVTADGQMQPVPFPPDALIGPGIPRH-ARQINTL--NHGEVVCAVTISNPTRHVYTGGKGCVKVWDISHPGN- 84 (337)
T ss_dssp EEECCEEEECSSSCEEECCCCTTSSSSTTCCSE-EEEEEEE--CCSSCCCEEEECSSSSEEEEECBSEEEEEETTSTTC-
T ss_pred CCceeEEEECCCCCEEEeecCCCcEeccccCCc-cccceec--cCCCceEEEEEecCCcEEEEcCCCeEEEEECCCCCc-
Confidence 344567888 99999998876544433322222 1111122 22335666654432 233334488899996554211
Q ss_pred cCCCCCCceecCEEccc-cCCcCeEEEEcc--CCeEEEEEcCCCEEEEeCCCCCcccCCCCCCCCcceeecCCCCCCCEE
Q 017198 83 GHRDTNRPIFRPRLVEA-LKGVPCKQVTAG--LNFTGFLTIRGHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVV 159 (375)
Q Consensus 83 g~~~~~~~~~~p~~i~~-~~~~~i~~v~~g--~~~~~~lt~~g~v~~~G~n~~g~lg~~~~~~~~~p~~~~~~~~~~~i~ 159 (375)
......+.. .....|..++.. ....++...+|.|+.|-..... ......+.. ....|.
T Consensus 85 --------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~---------~~~~~~~~~--~~~~i~ 145 (337)
T 1gxr_A 85 --------KSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPT---------PRIKAELTS--SAPACY 145 (337)
T ss_dssp --------CSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC-----------EEEEEEEC--SSSCEE
T ss_pred --------eeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCC---------cceeeeccc--CCCceE
Confidence 011111110 122345555543 3345556778889988443210 000111111 114577
Q ss_pred EEEeCC--CeEEEEECCCcEEEEeCCCCCccCCCCCCCccCceeeeccccCCccEEEEEcCC--CeEEEEeCCCCEEEEe
Q 017198 160 QIAAGP--SYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGD--EHVVALDSSGYVYTWG 235 (375)
Q Consensus 160 ~i~~g~--~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~p~~i~~~~~~~~~i~~i~~g~--~~~~~lt~~g~v~~~G 235 (375)
.++... .+.+.-..+|.|+.|-.... ..+..+......|..++... ...+..+.+|.|+.|-
T Consensus 146 ~~~~~~~~~~l~~~~~dg~v~~~d~~~~--------------~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d 211 (337)
T 1gxr_A 146 ALAISPDSKVCFSCCSDGNIAVWDLHNQ--------------TLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWD 211 (337)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEETTTT--------------EEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred EEEECCCCCEEEEEeCCCcEEEEeCCCC--------------ceeeeeecccCceEEEEECCCCCEEEEEecCCcEEEEE
Confidence 776653 45556678899999965321 11222222233566665543 3455557889999996
Q ss_pred CCCCCCCCCCCCCCcccCeeccCCCCCceEEEEec--CCcEEEEEcCCcEEEEeCCCCCCCCCCCCCCCCceecceEcCc
Q 017198 236 KGYCGALGHGDEIDKTLPEPLSSLKSHLAVQVCAR--KRKTFVLVDTGSVYGFGWMGFGSLGFPDRGVSDKVLRPRILDS 313 (375)
Q Consensus 236 ~n~~gqlg~~~~~~~~~p~~i~~~~~~~i~~i~~g--~~~~~~l~~~g~vy~~G~n~~gqlg~~~~~~~~~~~~p~~~~~ 313 (375)
..... ....+. ....+..++.. ....++-..+|.|+.|-..... ...+.
T Consensus 212 ~~~~~-----------~~~~~~--~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~---------------~~~~~- 262 (337)
T 1gxr_A 212 LREGR-----------QLQQHD--FTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPD---------------KYQLH- 262 (337)
T ss_dssp TTTTE-----------EEEEEE--CSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSC---------------EEEEC-
T ss_pred CCCCc-----------eEeeec--CCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCC---------------eEEEc-
Confidence 43211 001111 12235555443 3334444567888888643211 11111
Q ss_pred cCCCcEEEEEeCC--CceEEEEcCCCEEEeeCCC
Q 017198 314 LRAHHVSQISTGL--YHTVVVTDRGRLFGFGDNE 345 (375)
Q Consensus 314 ~~~~~i~~i~~G~--~h~~~l~~~g~v~~wG~n~ 345 (375)
.....+..++... ...+.-..+|.|+.|-...
T Consensus 263 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~ 296 (337)
T 1gxr_A 263 LHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPY 296 (337)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT
T ss_pred CCccceeEEEECCCCCEEEEecCCCcEEEEECCC
Confidence 1123566666653 3344445788899996543
No 21
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=95.42 E-value=1.2 Score=38.89 Aligned_cols=220 Identities=8% Similarity=-0.038 Sum_probs=104.1
Q ss_pred CCEEEEecC---CceEEEEEcCCcEEEeeCCCCCcccCCCCCCceecCEEcc--ccCCcCeEEEEcc--CCeEEEEEcCC
Q 017198 50 AHVVQVSAS---ENHAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVE--ALKGVPCKQVTAG--LNFTGFLTIRG 122 (375)
Q Consensus 50 ~~i~~i~~g---~~~~~~lt~~g~vy~~G~n~~gqlg~~~~~~~~~~p~~i~--~~~~~~i~~v~~g--~~~~~~lt~~g 122 (375)
..|..|+.. ....+.-..||.|+.|-..... ....+. ......|..++.. ....+....+|
T Consensus 116 ~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~------------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg 183 (366)
T 3k26_A 116 NAINELKFHPRDPNLLLSVSKDHALRLWNIQTDT------------LVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDH 183 (366)
T ss_dssp SCEEEEEECSSCTTEEEEEETTSCEEEEETTTTE------------EEEEECSTTSCSSCEEEEEECTTSSEEEEEETTS
T ss_pred CcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCe------------EEEEecccccccCceeEEEECCCCCEEEEecCCC
Confidence 367777764 4556666778999999654311 111110 1123356666643 34556667889
Q ss_pred CEEEEeCCCCCccc-------CCCC--CCC------CcceeecCCCCCCCEEEEEeCCCeEEEEECCCcEEEEeCCCCCc
Q 017198 123 HVHTCGSNTHGQLG-------HGDT--LDR------PTPKSIAPLEEVGSVVQIAAGPSYMLAVTGNGVVYSFGSGSNFC 187 (375)
Q Consensus 123 ~v~~~G~n~~g~lg-------~~~~--~~~------~~p~~~~~~~~~~~i~~i~~g~~~~~~lt~~g~v~~~G~n~~gq 187 (375)
.|+.|-......+. .... ... ..|...........|..++....+.+.-..+|.|..|-.....+
T Consensus 184 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~~wd~~~~~~ 263 (366)
T 3k26_A 184 SLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWLGDLILSKSCENAIVCWKPGKMED 263 (366)
T ss_dssp CEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEETTEEEEECSSSEEEEEEESSTTC
T ss_pred CEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEcCCEEEEEecCCEEEEEeCCCccc
Confidence 99999654321110 0000 000 00000000001245666665566777778899999997644322
Q ss_pred cCCCCCCCccCceeeeccccCCccEEEEEc--C--CCeEEEEeCCCCEEEEeCCCCCCCCCCCCCCcccCeeccCC-CCC
Q 017198 188 LGHGEQHDELQPRAIQTFRRKGIHVVRVSA--G--DEHVVALDSSGYVYTWGKGYCGALGHGDEIDKTLPEPLSSL-KSH 262 (375)
Q Consensus 188 lg~~~~~~~~~p~~i~~~~~~~~~i~~i~~--g--~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~p~~i~~~-~~~ 262 (375)
.-............+..+......|..++. . ....++-..+|.|+.|-......+ ......+... ...
T Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~-------~~~~~~~~~~~~~~ 336 (366)
T 3k26_A 264 DIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPH-------KAKCTTLTHHKCGA 336 (366)
T ss_dssp CGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSSGG-------GCEEEEECCTTCCS
T ss_pred cccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCCc-------cccceEEcccccCC
Confidence 111111111111222222212212322322 2 344555678889999965321100 0011112211 134
Q ss_pred ceEEEEecC--CcEEEEEcCCcEEEEeC
Q 017198 263 LAVQVCARK--RKTFVLVDTGSVYGFGW 288 (375)
Q Consensus 263 ~i~~i~~g~--~~~~~l~~~g~vy~~G~ 288 (375)
.|..++... ...+.-..||.|+.|--
T Consensus 337 ~v~~~~~s~~~~~l~s~~~dg~i~iwd~ 364 (366)
T 3k26_A 337 AIRQTSFSRDSSILIAVCDDASIWRWDR 364 (366)
T ss_dssp CEEEEEECTTSSEEEEEETTSEEEEEEC
T ss_pred ceEEEEeCCCCCeEEEEeCCCEEEEEEe
Confidence 577666543 33444567888888853
No 22
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=95.00 E-value=2.1 Score=39.11 Aligned_cols=187 Identities=10% Similarity=0.016 Sum_probs=114.0
Q ss_pred CEEEEecCCceEEEEEcCCcEEEeeCCCCCcccCCCCCCceecCEEccccCCcCeEEEEccCCeEEEEEcCCCEEEEeCC
Q 017198 51 HVVQVSASENHAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGLNFTGFLTIRGHVHTCGSN 130 (375)
Q Consensus 51 ~i~~i~~g~~~~~~lt~~g~vy~~G~n~~gqlg~~~~~~~~~~p~~i~~~~~~~i~~v~~g~~~~~~lt~~g~v~~~G~n 130 (375)
.|..++......+.-..||.|+.|-...... ...+. .....|..++......+.-+.+|.|..|-..
T Consensus 201 ~v~~~~~~~~~l~s~s~dg~i~~wd~~~~~~------------~~~~~-~~~~~v~~~~~~~~~l~~~~~dg~i~iwd~~ 267 (445)
T 2ovr_B 201 TVRCMHLHEKRVVSGSRDATLRVWDIETGQC------------LHVLM-GHVAAVRCVQYDGRRVVSGAYDFMVKVWDPE 267 (445)
T ss_dssp CEEEEEEETTEEEEEETTSEEEEEESSSCCE------------EEEEE-CCSSCEEEEEECSSCEEEEETTSCEEEEEGG
T ss_pred cEEEEEecCCEEEEEeCCCEEEEEECCCCcE------------EEEEc-CCcccEEEEEECCCEEEEEcCCCEEEEEECC
Confidence 6777777777778888899999996543110 01111 1233566777666777778889999999533
Q ss_pred CCCcccCCCCCCCCcceeecCCC-CCCCEEEEEeCCCeEEEEECCCcEEEEeCCCCCccCCCCCCCccCceeeeccccCC
Q 017198 131 THGQLGHGDTLDRPTPKSIAPLE-EVGSVVQIAAGPSYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKG 209 (375)
Q Consensus 131 ~~g~lg~~~~~~~~~p~~~~~~~-~~~~i~~i~~g~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~p~~i~~~~~~~ 209 (375)
.. ..+..+. ....|..++....+.+.-..+|.|..|-..... .+..+....
T Consensus 268 ~~--------------~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~i~d~~~~~--------------~~~~~~~~~ 319 (445)
T 2ovr_B 268 TE--------------TCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGN--------------CIHTLTGHQ 319 (445)
T ss_dssp GT--------------EEEEEECCCSSCEEEEEECSSEEEEEETTSCEEEEETTTCC--------------EEEEECCCC
T ss_pred CC--------------cEeEEecCCCCceEEEEECCCEEEEEeCCCeEEEEECCCCC--------------EEEEEcCCc
Confidence 21 1111111 125688888877777777889999999653311 122222223
Q ss_pred ccEEEEEcCCCeEEEEeCCCCEEEEeCCCCCCCCCCCCCCcccCeeccC--CCCCceEEEEecCCcEEEEEcCCcEEEEe
Q 017198 210 IHVVRVSAGDEHVVALDSSGYVYTWGKGYCGALGHGDEIDKTLPEPLSS--LKSHLAVQVCARKRKTFVLVDTGSVYGFG 287 (375)
Q Consensus 210 ~~i~~i~~g~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~p~~i~~--~~~~~i~~i~~g~~~~~~l~~~g~vy~~G 287 (375)
..+..++...+..+.-..+|.|..|-..... ....+.. .....|..++....+.+.-+.||.|..|-
T Consensus 320 ~~v~~~~~~~~~l~~~~~dg~i~vwd~~~~~-----------~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~v~iwd 388 (445)
T 2ovr_B 320 SLTSGMELKDNILVSGNADSTVKIWDIKTGQ-----------CLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWD 388 (445)
T ss_dssp SCEEEEEEETTEEEEEETTSCEEEEETTTCC-----------EEEEECSTTSCSSCEEEEEECSSEEEEEETTSEEEEEE
T ss_pred ccEEEEEEeCCEEEEEeCCCeEEEEECCCCc-----------EEEEEccCCCCCCCEEEEEECCCEEEEEeCCCeEEEEE
Confidence 3566666666777777889999999653211 0111111 12345777777666666677899999997
Q ss_pred CC
Q 017198 288 WM 289 (375)
Q Consensus 288 ~n 289 (375)
..
T Consensus 389 ~~ 390 (445)
T 2ovr_B 389 LK 390 (445)
T ss_dssp TT
T ss_pred CC
Confidence 43
No 23
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=94.83 E-value=1.9 Score=37.74 Aligned_cols=293 Identities=8% Similarity=-0.051 Sum_probs=134.7
Q ss_pred CCeeEEE-eCCcEEEEeCCCCCccCCCCCCCeeeeeeeecCC-CCCCEEEEecCCc------eEEEEEcCCcEEEeeCCC
Q 017198 7 RYHTLLI-SNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFP-SAAHVVQVSASEN------HAAFVLQSGQVFTCGDNS 78 (375)
Q Consensus 7 ~~~~~~l-~~g~l~~wG~n~~g~Lg~~~~~~~~~~~~~~~~~-~~~~i~~i~~g~~------~~~~lt~~g~vy~~G~n~ 78 (375)
....++- .++.|.+|=...... .........+ ....|..++.... ..+.-..||.|..|-...
T Consensus 34 ~~~~~~~~~~~~v~vw~~~~~~~---------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~ 104 (366)
T 3k26_A 34 DPLVFATVGSNRVTLYECHSQGE---------IRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPIT 104 (366)
T ss_dssp SCEEEEEEETTEEEEEEECGGGC---------EEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTT
T ss_pred CceEEEECCCCEEEEEEcCCCcE---------EEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchh
Confidence 3445555 777888886543211 1112222211 2235666655433 556666789999995443
Q ss_pred CCcccCCCCCCceecCEEccccCCcCeEEEEcc---CCeEEEEEcCCCEEEEeCCCCCcccCCCCCCCCcceeecC-CCC
Q 017198 79 SFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAG---LNFTGFLTIRGHVHTCGSNTHGQLGHGDTLDRPTPKSIAP-LEE 154 (375)
Q Consensus 79 ~gqlg~~~~~~~~~~p~~i~~~~~~~i~~v~~g---~~~~~~lt~~g~v~~~G~n~~g~lg~~~~~~~~~p~~~~~-~~~ 154 (375)
.. ....+. .....|..++.. ....+....+|.|+.|-...... ...+.. ...
T Consensus 105 ~~------------~~~~~~-~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~-----------~~~~~~~~~~ 160 (366)
T 3k26_A 105 MQ------------CIKHYV-GHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTL-----------VAIFGGVEGH 160 (366)
T ss_dssp CC------------EEEEEE-SCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEE-----------EEEECSTTSC
T ss_pred ce------------Eeeeec-CCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeE-----------EEEecccccc
Confidence 10 011111 123356666653 35566667899999995432111 111100 112
Q ss_pred CCCEEEEEeCC--CeEEEEECCCcEEEEeCCCCCccC-------CCCC--CCccCce-----eeeccccCCccEEEEEcC
Q 017198 155 VGSVVQIAAGP--SYMLAVTGNGVVYSFGSGSNFCLG-------HGEQ--HDELQPR-----AIQTFRRKGIHVVRVSAG 218 (375)
Q Consensus 155 ~~~i~~i~~g~--~~~~~lt~~g~v~~~G~n~~gqlg-------~~~~--~~~~~p~-----~i~~~~~~~~~i~~i~~g 218 (375)
...|..++... .+.+....+|.|..|-......+. .... .....+. ...........|..++..
T Consensus 161 ~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 240 (366)
T 3k26_A 161 RDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL 240 (366)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE
T ss_pred cCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc
Confidence 25788887653 455566788999999764321110 0000 0000000 000011122245555444
Q ss_pred CCeEEEEeCCCCEEEEeCCCCCCCCCCCCCCcccCeeccCC--CCCceEEEEec----CCcEEEEEcCCcEEEEeCCCCC
Q 017198 219 DEHVVALDSSGYVYTWGKGYCGALGHGDEIDKTLPEPLSSL--KSHLAVQVCAR----KRKTFVLVDTGSVYGFGWMGFG 292 (375)
Q Consensus 219 ~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~p~~i~~~--~~~~i~~i~~g----~~~~~~l~~~g~vy~~G~n~~g 292 (375)
.+..+....+|.|..|-.....+.-............+..+ ....|..++.. ....+.-..+|.|+.|-.....
T Consensus 241 ~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~ 320 (366)
T 3k26_A 241 GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVED 320 (366)
T ss_dssp TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSS
T ss_pred CCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCC
Confidence 56666677899999997543221110000000000111110 11112222222 3344445678889998753211
Q ss_pred CCCCCCCCCCCceecceEcCccC-CCcEEEEEeCCC--ceEEEEcCCCEEEee
Q 017198 293 SLGFPDRGVSDKVLRPRILDSLR-AHHVSQISTGLY--HTVVVTDRGRLFGFG 342 (375)
Q Consensus 293 qlg~~~~~~~~~~~~p~~~~~~~-~~~i~~i~~G~~--h~~~l~~~g~v~~wG 342 (375)
.. ......+..-. ...|..++.... ..+.-..||.|+.|=
T Consensus 321 ~~----------~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd 363 (366)
T 3k26_A 321 PH----------KAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWD 363 (366)
T ss_dssp GG----------GCEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred Cc----------cccceEEcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEE
Confidence 00 00111222111 346777776543 344445788898884
No 24
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=94.70 E-value=3 Score=40.99 Aligned_cols=17 Identities=18% Similarity=0.168 Sum_probs=11.3
Q ss_pred CcEEEEEcCCcEEEEeC
Q 017198 272 RKTFVLVDTGSVYGFGW 288 (375)
Q Consensus 272 ~~~~~l~~~g~vy~~G~ 288 (375)
.|+++...+|+||.+|-
T Consensus 657 gh~~~~~~~g~i~v~GG 673 (695)
T 2zwa_A 657 GFSLVSTSMGTIHIIGG 673 (695)
T ss_dssp SCEEECC---CEEEECC
T ss_pred eeeEEEeCCCEEEEEeC
Confidence 47777778889999984
No 25
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=94.62 E-value=2.4 Score=38.09 Aligned_cols=140 Identities=11% Similarity=0.028 Sum_probs=81.2
Q ss_pred CCeeEEE-eCCcEEEEeCCCCCccCCCCCCCeeeeeeeecCCCCCCEEEEecC--CceEEEEEcCCcEEEeeCCCCCccc
Q 017198 7 RYHTLLI-SNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSAS--ENHAAFVLQSGQVFTCGDNSSFCCG 83 (375)
Q Consensus 7 ~~~~~~l-~~g~l~~wG~n~~g~Lg~~~~~~~~~~~~~~~~~~~~~i~~i~~g--~~~~~~lt~~g~vy~~G~n~~gqlg 83 (375)
..+.++. .|+.|++|-.... . ....+.......|..|+.. ....++-..||.|..|-.....
T Consensus 103 ~~~l~~~~~d~~v~lw~~~~~-~-----------~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~--- 167 (401)
T 4aez_A 103 NLNVVAVALERNVYVWNADSG-S-----------VSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQT--- 167 (401)
T ss_dssp TTSEEEEEETTEEEEEETTTC-C-----------EEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCC---
T ss_pred CCCEEEEECCCeEEEeeCCCC-c-----------EeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCe---
Confidence 3455666 8999999976431 1 1223333334467776654 4455666678999999654411
Q ss_pred CCCCCCceecCEEccccCCcCeEEEEccCCeEEEEEcCCCEEEEeCCCCCcccCCCCCCCCcceeecCCCCCCCEEEEEe
Q 017198 84 HRDTNRPIFRPRLVEALKGVPCKQVTAGLNFTGFLTIRGHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAA 163 (375)
Q Consensus 84 ~~~~~~~~~~p~~i~~~~~~~i~~v~~g~~~~~~lt~~g~v~~~G~n~~g~lg~~~~~~~~~p~~~~~~~~~~~i~~i~~ 163 (375)
....+. .....|..++......+.-..+|.|+.|-...... ....+... ...|..++.
T Consensus 168 ---------~~~~~~-~~~~~v~~~~~~~~~l~~~~~dg~i~i~d~~~~~~----------~~~~~~~~--~~~v~~~~~ 225 (401)
T 4aez_A 168 ---------KLRTMA-GHQARVGCLSWNRHVLSSGSRSGAIHHHDVRIANH----------QIGTLQGH--SSEVCGLAW 225 (401)
T ss_dssp ---------EEEEEC-CCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSC----------EEEEEECC--SSCEEEEEE
T ss_pred ---------EEEEec-CCCCceEEEEECCCEEEEEcCCCCEEEEecccCcc----------eeeEEcCC--CCCeeEEEE
Confidence 111111 22336777777667777788899999995432111 11111111 156777776
Q ss_pred CC--CeEEEEECCCcEEEEeCC
Q 017198 164 GP--SYMLAVTGNGVVYSFGSG 183 (375)
Q Consensus 164 g~--~~~~~lt~~g~v~~~G~n 183 (375)
.. .+.+.-..+|.|..|-..
T Consensus 226 ~~~~~~l~s~~~d~~v~iwd~~ 247 (401)
T 4aez_A 226 RSDGLQLASGGNDNVVQIWDAR 247 (401)
T ss_dssp CTTSSEEEEEETTSCEEEEETT
T ss_pred cCCCCEEEEEeCCCeEEEccCC
Confidence 53 345555778999999653
No 26
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=94.42 E-value=4.2 Score=39.98 Aligned_cols=64 Identities=14% Similarity=0.066 Sum_probs=33.5
Q ss_pred CCeEEEEEc-CCCEEEEeCCCCCcccCCCC----CCCCcceeecCCCCCCCEEEEEeCCCeEEEEECCCcEEEEeCC
Q 017198 112 LNFTGFLTI-RGHVHTCGSNTHGQLGHGDT----LDRPTPKSIAPLEEVGSVVQIAAGPSYMLAVTGNGVVYSFGSG 183 (375)
Q Consensus 112 ~~~~~~lt~-~g~v~~~G~n~~g~lg~~~~----~~~~~p~~~~~~~~~~~i~~i~~g~~~~~~lt~~g~v~~~G~n 183 (375)
..|++++.. +|+||++|-.....--..+. ........+..++. .-..|++++..+++||++|-.
T Consensus 441 ~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~~t~~W~~~~~~p~--------~R~~h~~~~~~~~~iyv~GG~ 509 (695)
T 2zwa_A 441 MCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDMKTREWSMIKSLSH--------TRFRHSACSLPDGNVLILGGV 509 (695)
T ss_dssp BSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEETTTTEEEECCCCSB--------CCBSCEEEECTTSCEEEECCB
T ss_pred cceEEEEEccCCEEEEEcCCCCCCCccccEEEEeCCCCcEEECCCCCC--------CcccceEEEEcCCEEEEECCC
Confidence 467777766 89999998643211000000 00012222222211 234677666568999999853
No 27
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=93.99 E-value=2.6 Score=35.87 Aligned_cols=184 Identities=10% Similarity=0.021 Sum_probs=100.9
Q ss_pred CEEEEecCCceEEEEEcCCcEEEeeCCCCCcccCCCCCCceecCEEccccCCcCeEEEEc---cCCeEEEEEcCCCEEEE
Q 017198 51 HVVQVSASENHAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTA---GLNFTGFLTIRGHVHTC 127 (375)
Q Consensus 51 ~i~~i~~g~~~~~~lt~~g~vy~~G~n~~gqlg~~~~~~~~~~p~~i~~~~~~~i~~v~~---g~~~~~~lt~~g~v~~~ 127 (375)
.|..++......+.-..||.|+.|-... ....+. .....+..+.. .....+....+|.|..|
T Consensus 106 ~i~~~~~~~~~l~~~~~d~~i~~~d~~~--------------~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~ 170 (313)
T 3odt_A 106 NVCSLSFQDGVVISGSWDKTAKVWKEGS--------------LVYNLQ-AHNASVWDAKVVSFSENKFLTASADKTIKLW 170 (313)
T ss_dssp CEEEEEEETTEEEEEETTSEEEEEETTE--------------EEEEEE-CCSSCEEEEEEEETTTTEEEEEETTSCEEEE
T ss_pred CEEEEEecCCEEEEEeCCCCEEEEcCCc--------------EEEecc-cCCCceeEEEEccCCCCEEEEEECCCCEEEE
Confidence 6777777677777778889999985110 011111 11224444443 45666777888999999
Q ss_pred eCCCCCcccCCCCCCCCcceeecCCCCCCCEEEEEeCC-CeEEEEECCCcEEEEeCCCCCccCCCCCCCccCceeeeccc
Q 017198 128 GSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGP-SYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFR 206 (375)
Q Consensus 128 G~n~~g~lg~~~~~~~~~p~~~~~~~~~~~i~~i~~g~-~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~p~~i~~~~ 206 (375)
-.. .+...........|..++... ...++-..+|.|+.|-.... ..+..+.
T Consensus 171 d~~--------------~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~dg~i~i~d~~~~--------------~~~~~~~ 222 (313)
T 3odt_A 171 QND--------------KVIKTFSGIHNDVVRHLAVVDDGHFISCSNDGLIKLVDMHTG--------------DVLRTYE 222 (313)
T ss_dssp ETT--------------EEEEEECSSCSSCEEEEEEEETTEEEEEETTSEEEEEETTTC--------------CEEEEEE
T ss_pred ecC--------------ceEEEEeccCcccEEEEEEcCCCeEEEccCCCeEEEEECCch--------------hhhhhhh
Confidence 411 111111111124566666542 33556678899999965321 1222222
Q ss_pred cCCccEEEEEcCCC-eEEEEeCCCCEEEEeCCCCCCCCCCCCCCcccCeeccCCCCCceEEEEecCC-cEEEEEcCCcEE
Q 017198 207 RKGIHVVRVSAGDE-HVVALDSSGYVYTWGKGYCGALGHGDEIDKTLPEPLSSLKSHLAVQVCARKR-KTFVLVDTGSVY 284 (375)
Q Consensus 207 ~~~~~i~~i~~g~~-~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~p~~i~~~~~~~i~~i~~g~~-~~~~l~~~g~vy 284 (375)
.....|..++...+ ..++...+|.|+.|-.... .....+ ......|..++...+ ..++-..||.|+
T Consensus 223 ~~~~~i~~~~~~~~~~l~~~~~dg~v~iwd~~~~-----------~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~dg~i~ 290 (313)
T 3odt_A 223 GHESFVYCIKLLPNGDIVSCGEDRTVRIWSKENG-----------SLKQVI-TLPAISIWSVDCMSNGDIIVGSSDNLVR 290 (313)
T ss_dssp CCSSCEEEEEECTTSCEEEEETTSEEEEECTTTC-----------CEEEEE-ECSSSCEEEEEECTTSCEEEEETTSCEE
T ss_pred cCCceEEEEEEecCCCEEEEecCCEEEEEECCCC-----------ceeEEE-eccCceEEEEEEccCCCEEEEeCCCcEE
Confidence 23335777766544 4555678899999964221 011111 122335666665433 355667889999
Q ss_pred EEeCC
Q 017198 285 GFGWM 289 (375)
Q Consensus 285 ~~G~n 289 (375)
.|-..
T Consensus 291 iw~~~ 295 (313)
T 3odt_A 291 IFSQE 295 (313)
T ss_dssp EEESC
T ss_pred EEeCC
Confidence 99754
No 28
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=93.42 E-value=3.4 Score=35.46 Aligned_cols=224 Identities=6% Similarity=-0.093 Sum_probs=112.1
Q ss_pred CCEEEEecC--CceEEEEEcCCcEEEeeCCCCCcccCCCCCCceecCEEccccCCcCeEEEEc--cCCeEEEEEcCCCEE
Q 017198 50 AHVVQVSAS--ENHAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTA--GLNFTGFLTIRGHVH 125 (375)
Q Consensus 50 ~~i~~i~~g--~~~~~~lt~~g~vy~~G~n~~gqlg~~~~~~~~~~p~~i~~~~~~~i~~v~~--g~~~~~~lt~~g~v~ 125 (375)
..|..++.. ....+.-..||.|+.|-..... ......+. .....|..++. .....+..+.+|.|+
T Consensus 98 ~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~----------~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~dg~v~ 166 (337)
T 1gxr_A 98 NYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPT----------PRIKAELT-SSAPACYALAISPDSKVCFSCCSDGNIA 166 (337)
T ss_dssp SBEEEEEECTTSSEEEEEESSSEEEEEECCCC------------EEEEEEE-CSSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred CcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCC----------cceeeecc-cCCCceEEEEECCCCCEEEEEeCCCcEE
Confidence 366666654 3445555678899998554310 00011111 11224555544 334556667889999
Q ss_pred EEeCCCCCcccCCCCCCCCcceeecCCCCCCCEEEEEeCC--CeEEEEECCCcEEEEeCCCCCccCCCCCCCccCceeee
Q 017198 126 TCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGP--SYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQ 203 (375)
Q Consensus 126 ~~G~n~~g~lg~~~~~~~~~p~~~~~~~~~~~i~~i~~g~--~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~p~~i~ 203 (375)
.|-..... ....+.. ....|..++... .+.+....+|.|+.|-..... .+.
T Consensus 167 ~~d~~~~~-----------~~~~~~~--~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~--------------~~~ 219 (337)
T 1gxr_A 167 VWDLHNQT-----------LVRQFQG--HTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGR--------------QLQ 219 (337)
T ss_dssp EEETTTTE-----------EEEEECC--CSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTE--------------EEE
T ss_pred EEeCCCCc-----------eeeeeec--ccCceEEEEECCCCCEEEEEecCCcEEEEECCCCc--------------eEe
Confidence 99543211 1111111 125677777653 355556788999999653211 111
Q ss_pred ccccCCccEEEEEcC--CCeEEEEeCCCCEEEEeCCCCCCCCCCCCCCcccCeeccCCCCCceEEEEec--CCcEEEEEc
Q 017198 204 TFRRKGIHVVRVSAG--DEHVVALDSSGYVYTWGKGYCGALGHGDEIDKTLPEPLSSLKSHLAVQVCAR--KRKTFVLVD 279 (375)
Q Consensus 204 ~~~~~~~~i~~i~~g--~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~p~~i~~~~~~~i~~i~~g--~~~~~~l~~ 279 (375)
.+. ....+..++.. ....++-+.+|.|+.|-..... ...+ ......|..++.. ....+.-..
T Consensus 220 ~~~-~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~------------~~~~-~~~~~~v~~~~~~~~~~~l~~~~~ 285 (337)
T 1gxr_A 220 QHD-FTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPD------------KYQL-HLHESCVLSLKFAYCGKWFVSTGK 285 (337)
T ss_dssp EEE-CSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSC------------EEEE-CCCSSCEEEEEECTTSSEEEEEET
T ss_pred eec-CCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCC------------eEEE-cCCccceeEEEECCCCCEEEEecC
Confidence 111 11245555443 3344555678888888643211 0111 1123346666554 334445567
Q ss_pred CCcEEEEeCCCCCCCCCCCCCCCCceecceEcCccCCCcEEEEEeCC--CceEEEEcCCCEEEe
Q 017198 280 TGSVYGFGWMGFGSLGFPDRGVSDKVLRPRILDSLRAHHVSQISTGL--YHTVVVTDRGRLFGF 341 (375)
Q Consensus 280 ~g~vy~~G~n~~gqlg~~~~~~~~~~~~p~~~~~~~~~~i~~i~~G~--~h~~~l~~~g~v~~w 341 (375)
+|.|+.|-...... . ... .....+..++... ...++-..+|.|+.|
T Consensus 286 dg~i~~~~~~~~~~-----------~---~~~--~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw 333 (337)
T 1gxr_A 286 DNLLNAWRTPYGAS-----------I---FQS--KESSSVLSCDISVDDKYIVTGSGDKKATVY 333 (337)
T ss_dssp TSEEEEEETTTCCE-----------E---EEE--ECSSCEEEEEECTTSCEEEEEETTSCEEEE
T ss_pred CCcEEEEECCCCeE-----------E---EEe--cCCCcEEEEEECCCCCEEEEecCCCeEEEE
Confidence 88999997432110 0 011 1123566665543 333444577888777
No 29
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=93.23 E-value=4 Score=35.72 Aligned_cols=201 Identities=11% Similarity=0.013 Sum_probs=103.7
Q ss_pred CCEEEEecC----CceEEEEEcCCcEEEeeCCCCCcccCCCCCCceecCEEccccCCcCeEEEEcc----CCeEEEEEcC
Q 017198 50 AHVVQVSAS----ENHAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAG----LNFTGFLTIR 121 (375)
Q Consensus 50 ~~i~~i~~g----~~~~~~lt~~g~vy~~G~n~~gqlg~~~~~~~~~~p~~i~~~~~~~i~~v~~g----~~~~~~lt~~ 121 (375)
..|..|+.. ....+.-..||.|..|-.... ...+..........|..++.. ....+....+
T Consensus 56 ~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~-----------~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d 124 (379)
T 3jrp_A 56 GPVWRVDWAHPKFGTILASCSYDGKVLIWKEENG-----------RWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSD 124 (379)
T ss_dssp SCEEEEEECCGGGCSEEEEEETTSCEEEEEEETT-----------EEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETT
T ss_pred CcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCCC-----------ceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCC
Confidence 377777764 456666677899999954431 111111111123356666654 3456667888
Q ss_pred CCEEEEeCCCCCcccCCCCCCCCcceeecCCCCCCCEEEEEeCC---------------CeEEEEECCCcEEEEeCCCCC
Q 017198 122 GHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGP---------------SYMLAVTGNGVVYSFGSGSNF 186 (375)
Q Consensus 122 g~v~~~G~n~~g~lg~~~~~~~~~p~~~~~~~~~~~i~~i~~g~---------------~~~~~lt~~g~v~~~G~n~~g 186 (375)
|.|..|=...... ..+..+.. ....|..++... .+.+.-..+|.|+.|-....
T Consensus 125 ~~i~v~d~~~~~~---------~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~- 192 (379)
T 3jrp_A 125 GKVSVVEFKENGT---------TSPIIIDA--HAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSD- 192 (379)
T ss_dssp SEEEEEECCTTSC---------CCEEEEEC--CTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETT-
T ss_pred CcEEEEecCCCCc---------eeeEEecC--CCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCC-
Confidence 9999985432211 11111211 114677776653 45556678899999954221
Q ss_pred ccCCCCCCCccCceeeeccccCCccEEEEEcCCC-----eEEEEeCCCCEEEEeCCCCCCCCCCCCCCcccCeeccCCCC
Q 017198 187 CLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGDE-----HVVALDSSGYVYTWGKGYCGALGHGDEIDKTLPEPLSSLKS 261 (375)
Q Consensus 187 qlg~~~~~~~~~p~~i~~~~~~~~~i~~i~~g~~-----~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~p~~i~~~~~ 261 (375)
......+..+......|..++.... ..+....+|.|..|-...... .............
T Consensus 193 ---------~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~-------~~~~~~~~~~~~~ 256 (379)
T 3jrp_A 193 ---------AQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQG-------PWKKTLLKEEKFP 256 (379)
T ss_dssp ---------TTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTS-------CCEEEESSSSCCS
T ss_pred ---------CcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCCc-------cceeeeeccccCC
Confidence 1111122222223335777776544 344457889999996532110 0000000011123
Q ss_pred CceEEEEec--CCcEEEEEcCCcEEEEeCC
Q 017198 262 HLAVQVCAR--KRKTFVLVDTGSVYGFGWM 289 (375)
Q Consensus 262 ~~i~~i~~g--~~~~~~l~~~g~vy~~G~n 289 (375)
..|..++.. ....++-..+|.|+.|-.+
T Consensus 257 ~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~ 286 (379)
T 3jrp_A 257 DVLWRASWSLSGNVLALSGGDNKVTLWKEN 286 (379)
T ss_dssp SCEEEEEECSSSCCEEEEESSSSEEEEEEE
T ss_pred CcEEEEEEcCCCCEEEEecCCCcEEEEeCC
Confidence 346665543 3344455688999988644
No 30
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=92.93 E-value=4.3 Score=35.28 Aligned_cols=159 Identities=8% Similarity=0.069 Sum_probs=77.1
Q ss_pred CEEEEecC--CceEEEEEcCCcEEEeeCCCCCcccCCCCCCceecCEEccccCCcCeEEEEc--cCCeEEEEEcC-----
Q 017198 51 HVVQVSAS--ENHAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTA--GLNFTGFLTIR----- 121 (375)
Q Consensus 51 ~i~~i~~g--~~~~~~lt~~g~vy~~G~n~~gqlg~~~~~~~~~~p~~i~~~~~~~i~~v~~--g~~~~~~lt~~----- 121 (375)
.|..++.. ....+....||.|+.|-...... . ..+. ....|..++. .....++...+
T Consensus 76 ~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~---------~---~~~~--~~~~v~~~~~~~~~~~l~~~~~~~~~~~ 141 (369)
T 3zwl_B 76 TIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQC---------V---ATWK--SPVPVKRVEFSPCGNYFLAILDNVMKNP 141 (369)
T ss_dssp CEEEEEECTTSSEEEEEETTTEEEEEETTTCCE---------E---EEEE--CSSCEEEEEECTTSSEEEEEECCBTTBC
T ss_pred cEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcE---------E---EEee--cCCCeEEEEEccCCCEEEEecCCccCCC
Confidence 66666654 44566667889999996543111 0 1111 1223444443 33444455555
Q ss_pred CCEEEEeCCCCCcccCCCCCCCCcceeecCCCCCCCEEEEEeCC--CeEEEEECCCcEEEEeCCCCCccCCCCCCCccCc
Q 017198 122 GHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGP--SYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQP 199 (375)
Q Consensus 122 g~v~~~G~n~~g~lg~~~~~~~~~p~~~~~~~~~~~i~~i~~g~--~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~p 199 (375)
|.|+.|-.........-..........+........+..++... .+.++-..+|.|+.|-.... .
T Consensus 142 g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-------------~ 208 (369)
T 3zwl_B 142 GSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNN-------------Y 208 (369)
T ss_dssp CEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTT-------------T
T ss_pred CEEEEEEecCCccceeecccccceeeeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCC-------------c
Confidence 78888854322111000000000111111111112566666543 35555678899999965321 1
Q ss_pred eeeeccccCCccEEEEEcCC--CeEEEEeCCCCEEEEeC
Q 017198 200 RAIQTFRRKGIHVVRVSAGD--EHVVALDSSGYVYTWGK 236 (375)
Q Consensus 200 ~~i~~~~~~~~~i~~i~~g~--~~~~~lt~~g~v~~~G~ 236 (375)
..+..+......|..++... ...++.+.+|.|+.|-.
T Consensus 209 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~ 247 (369)
T 3zwl_B 209 EYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDV 247 (369)
T ss_dssp EEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEET
T ss_pred EeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEEC
Confidence 12222222233566666543 34445567888998864
No 31
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=92.85 E-value=4.1 Score=34.86 Aligned_cols=226 Identities=14% Similarity=0.094 Sum_probs=123.3
Q ss_pred eEEEEEcCCcEEEeeCCCCCcccCCCCCCceecCEEccccCCcCeEEEE--ccCCeEEEEEcCCCEEEEeCCCCCcccCC
Q 017198 61 HAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVT--AGLNFTGFLTIRGHVHTCGSNTHGQLGHG 138 (375)
Q Consensus 61 ~~~~lt~~g~vy~~G~n~~gqlg~~~~~~~~~~p~~i~~~~~~~i~~v~--~g~~~~~~lt~~g~v~~~G~n~~g~lg~~ 138 (375)
-+++|+++|-+-... |+.. .+..+..+. ....+.+++|++|++|..-..+.-. .
T Consensus 3 vtvils~~Gwir~~~-------g~~~--------------~gD~~~~~~~~~t~~~ll~fT~~G~v~~~~~~~lp~---~ 58 (276)
T 3no0_A 3 ITVAVLQDGSIIPVE-------ELPL--------------EKAPVVNILRVPFTEGLFLVSNRGRVYWIAGSQALQ---G 58 (276)
T ss_dssp EEEEEETTSEEEEGG-------GCCS--------------SCCCEEEEEEEETTSCEEEEETTSEEEEECSHHHHT---S
T ss_pred EEEEEcCCceeeecc-------CCCC--------------CCCeEEEEEEECCCCEEEEEcCCCeEEEEEhhhCcc---C
Confidence 478888888665431 1100 233444443 3456688999999999864322100 0
Q ss_pred CCCCCCcceeecCCCCCCCEEEEEeC---CCeEEEEECCCcEEEEeCCCCCccCCCCCCCccCceeeeccccCCccEEEE
Q 017198 139 DTLDRPTPKSIAPLEEVGSVVQIAAG---PSYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRV 215 (375)
Q Consensus 139 ~~~~~~~p~~~~~~~~~~~i~~i~~g---~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~p~~i~~~~~~~~~i~~i 215 (375)
... . + +...++|+.+.+- ..+.+++|++|.+.-.-...+.+- ........+.+.. .+..+
T Consensus 59 ~~~---~---l--l~~~e~i~~v~~~~~~~~~~v~~T~~G~iKr~~l~~~~~~--------~~G~~~i~lkegD-~l~~~ 121 (276)
T 3no0_A 59 SKV---S---L--KSREEKIVGAFIREKFGNRLLLATKKGYVKKIPLAEFEYK--------AQGMPIIKLTEGD-EVVSI 121 (276)
T ss_dssp EEC---C---C--SSTTCCEEEEEEGGGSCSEEEEEETTSEEEEEEGGGTTTC--------STTEECSCCCTTC-CEEEE
T ss_pred ccc---c---c--CCCCCEEEEEECCcCCCCEEEEEeCCCEEEEEEHHHhhhh--------cCCeEEEecCCCC-EEEEE
Confidence 000 0 2 4445889888762 257889999999888765444211 1111111222222 33333
Q ss_pred E--cCCCeEEEEeCCCCEEEEeCCCCCCCCCCCCCCcccCeeccCCCCCceEEEEec--CCcEEEEEcCCcEEEEeCCCC
Q 017198 216 S--AGDEHVVALDSSGYVYTWGKGYCGALGHGDEIDKTLPEPLSSLKSHLAVQVCAR--KRKTFVLVDTGSVYGFGWMGF 291 (375)
Q Consensus 216 ~--~g~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~p~~i~~~~~~~i~~i~~g--~~~~~~l~~~g~vy~~G~n~~ 291 (375)
. ....+.+++|++|++|.+-....-.+|....... .+....+..|+.+... ....++++++|.....-...+
T Consensus 122 ~~~~~~~~ill~T~~G~~~r~~~~eip~~gR~a~Gv~----~i~L~~~d~vv~~~~~~~~~~ll~~T~~G~~kr~~~~e~ 197 (276)
T 3no0_A 122 ASSVDETHILLFTKKGRVARFSVREVPPSTPGARGVQ----GIKLEKNDETSGLRIWNGEPYLLVITAKGRVKKISHEEI 197 (276)
T ss_dssp EECCSSCEEEEEETTSEEEEEEGGGSCBCCTTCCCEE----CCCCCTTCCEEEEEEESSCSEEEEEETTSCEEEEEGGGS
T ss_pred EEeCCCCEEEEEECCCEEEEEEhhhCCCcCCCCCCEE----EEccCCCCEEEEEEEeCCCCEEEEEeCCCcEEEeEHHHc
Confidence 2 2455788899999999987655444443332221 1222345567766544 345677888998877665444
Q ss_pred CCCCCCCCCCCCceecceEcCccCCCcEEEEE--eCCCceEEEEcCCCEEE
Q 017198 292 GSLGFPDRGVSDKVLRPRILDSLRAHHVSQIS--TGLYHTVVVTDRGRLFG 340 (375)
Q Consensus 292 gqlg~~~~~~~~~~~~p~~~~~~~~~~i~~i~--~G~~h~~~l~~~g~v~~ 340 (375)
...+.+... ... + ..+..++.+. .++...++++++|++..
T Consensus 198 ~~~~R~gkG---v~~----i--~~~~~lv~~~~~~~~~~i~~~t~~G~~ir 239 (276)
T 3no0_A 198 PKTNRGVKG---TEV----S--GTKDTLVDLIPIKEEVELLITTKNGKAFY 239 (276)
T ss_dssp CCCCTTCCC---EEC----C--CSSSCEEEEEEESSEEEEEEEETTSCEEE
T ss_pred ccCCCCCcc---eEE----E--cCCCcEEEEEEeCCCCEEEEEcCCCeEEE
Confidence 333322100 000 0 1223454443 34567889999999888
No 32
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=91.83 E-value=6.7 Score=34.92 Aligned_cols=200 Identities=12% Similarity=0.050 Sum_probs=95.9
Q ss_pred CCEEEEecCCc--eEEEEEcCCcEEEeeCCCCCcccCCCCCCceecCEEccccCCcCeEEEEcc---CCeEEEEEcCCCE
Q 017198 50 AHVVQVSASEN--HAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAG---LNFTGFLTIRGHV 124 (375)
Q Consensus 50 ~~i~~i~~g~~--~~~~lt~~g~vy~~G~n~~gqlg~~~~~~~~~~p~~i~~~~~~~i~~v~~g---~~~~~~lt~~g~v 124 (375)
..|..++.... ..+.-..||.|..|-..... .. ......+.. ....|..++.. ....+.-..+|.|
T Consensus 68 ~~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~------~~--~~~~~~~~~-h~~~v~~~~~~~~~~~~l~s~~~dg~v 138 (416)
T 2pm9_A 68 SKFNDLDWSHNNKIIAGALDNGSLELYSTNEAN------NA--INSMARFSN-HSSSVKTVKFNAKQDNVLASGGNNGEI 138 (416)
T ss_dssp SCEEEEEECSSSSCEEEEESSSCEEEECCSSTT------SC--CCEEEECCC-SSSCCCEEEECSSSTTBEEEECSSSCE
T ss_pred CceEEEEECCCCCeEEEEccCCeEEEeeccccc------cc--ccchhhccC-CccceEEEEEcCCCCCEEEEEcCCCeE
Confidence 36777766433 34444578999999544310 00 001111111 12245555543 4455566678899
Q ss_pred EEEeCCCCCcccCCCCCCCCcceeecC-CCCCCCEEEEEeCCC---eEEEEECCCcEEEEeCCCCCccCCCCCCCccCce
Q 017198 125 HTCGSNTHGQLGHGDTLDRPTPKSIAP-LEEVGSVVQIAAGPS---YMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPR 200 (375)
Q Consensus 125 ~~~G~n~~g~lg~~~~~~~~~p~~~~~-~~~~~~i~~i~~g~~---~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~p~ 200 (375)
+.|-....... .....+..+.. ......|..++.... ..+.-..+|.|..|-.... .
T Consensus 139 ~iwd~~~~~~~-----~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~--------------~ 199 (416)
T 2pm9_A 139 FIWDMNKCTES-----PSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAK--------------K 199 (416)
T ss_dssp EBCBTTTTSSC-----TTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTT--------------E
T ss_pred EEEECCCCccc-----cccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCC--------------C
Confidence 99854332100 00001111110 111145666666543 3444467889999965331 1
Q ss_pred eeeccccC------CccEEEEEcCCC---eEEEEeCCC---CEEEEeCCCCCCCCCCCCCCcccCeeccC-CCCCceEEE
Q 017198 201 AIQTFRRK------GIHVVRVSAGDE---HVVALDSSG---YVYTWGKGYCGALGHGDEIDKTLPEPLSS-LKSHLAVQV 267 (375)
Q Consensus 201 ~i~~~~~~------~~~i~~i~~g~~---~~~~lt~~g---~v~~~G~n~~gqlg~~~~~~~~~p~~i~~-~~~~~i~~i 267 (375)
.+..+... ...|..++.... ..+.-..+| .|+.|-..... .+..... .....|..+
T Consensus 200 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~-----------~~~~~~~~~~~~~v~~~ 268 (416)
T 2pm9_A 200 EVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNAN-----------TPLQTLNQGHQKGILSL 268 (416)
T ss_dssp EEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTT-----------SCSBCCCSCCSSCEEEE
T ss_pred cceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCC-----------CCcEEeecCccCceeEE
Confidence 11111111 235666665443 344445666 77777543211 1111111 223356666
Q ss_pred Ee---cCCcEEEEEcCCcEEEEeC
Q 017198 268 CA---RKRKTFVLVDTGSVYGFGW 288 (375)
Q Consensus 268 ~~---g~~~~~~l~~~g~vy~~G~ 288 (375)
+. .....+.-..||.|+.|-.
T Consensus 269 ~~s~~~~~~l~s~~~dg~v~~wd~ 292 (416)
T 2pm9_A 269 DWCHQDEHLLLSSGRDNTVLLWNP 292 (416)
T ss_dssp EECSSCSSCEEEEESSSEEEEECS
T ss_pred EeCCCCCCeEEEEeCCCCEEEeeC
Confidence 65 3455556667899999964
No 33
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=91.80 E-value=6.5 Score=34.73 Aligned_cols=208 Identities=8% Similarity=-0.008 Sum_probs=104.8
Q ss_pred CCEEEEecCC---ceEEEEEcCCcEEEeeCCCCCcccCCCCCCceecCE-Ec--c--ccCCcCeEEEEc---cCCeEEEE
Q 017198 50 AHVVQVSASE---NHAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPR-LV--E--ALKGVPCKQVTA---GLNFTGFL 118 (375)
Q Consensus 50 ~~i~~i~~g~---~~~~~lt~~g~vy~~G~n~~gqlg~~~~~~~~~~p~-~i--~--~~~~~~i~~v~~---g~~~~~~l 118 (375)
..|..|+... ...+.-..||.|..|-.......... ...+. .+ . ......|..++. +....+..
T Consensus 44 ~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~ 118 (408)
T 4a11_B 44 GGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYY-----TCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSS 118 (408)
T ss_dssp SCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCE-----EECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEE
T ss_pred CcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceE-----eccccccccccccccCCCcEEEEEEccCCCcEEEEE
Confidence 3777777654 45555667899999966542111100 00000 00 0 012335666665 34456667
Q ss_pred EcCCCEEEEeCCCCCcccCCCCCCCCcceeecCCCCCCCEEEEEeCC-----CeEEEEECCCcEEEEeCCCCCccCCCCC
Q 017198 119 TIRGHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGP-----SYMLAVTGNGVVYSFGSGSNFCLGHGEQ 193 (375)
Q Consensus 119 t~~g~v~~~G~n~~g~lg~~~~~~~~~p~~~~~~~~~~~i~~i~~g~-----~~~~~lt~~g~v~~~G~n~~gqlg~~~~ 193 (375)
..+|.|..|-..... +... +.....+..+.... ...++-..+|.|+.|-.....
T Consensus 119 ~~d~~i~iwd~~~~~------------~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~------- 177 (408)
T 4a11_B 119 SFDKTLKVWDTNTLQ------------TADV--FNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGS------- 177 (408)
T ss_dssp ETTSEEEEEETTTTE------------EEEE--EECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSC-------
T ss_pred eCCCeEEEeeCCCCc------------ccee--ccCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcc-------
Confidence 789999999543211 1111 11114555555543 255666788999999653211
Q ss_pred CCccCceeeeccccCCccEEEEEcCCCe---EEEEeCCCCEEEEeCCCCCCCCC-C---CCCCcccCeeccCCCCCceEE
Q 017198 194 HDELQPRAIQTFRRKGIHVVRVSAGDEH---VVALDSSGYVYTWGKGYCGALGH-G---DEIDKTLPEPLSSLKSHLAVQ 266 (375)
Q Consensus 194 ~~~~~p~~i~~~~~~~~~i~~i~~g~~~---~~~lt~~g~v~~~G~n~~gqlg~-~---~~~~~~~p~~i~~~~~~~i~~ 266 (375)
.+..+......|..++..... .+.-..+|.|+.|-.......-. - .......+..........|..
T Consensus 178 -------~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 250 (408)
T 4a11_B 178 -------CSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNG 250 (408)
T ss_dssp -------CCEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEE
T ss_pred -------eeeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeE
Confidence 111112223356666654432 44567899999997543221100 0 000000111111222345777
Q ss_pred EEecCC--cEEEEEcCCcEEEEeCCC
Q 017198 267 VCARKR--KTFVLVDTGSVYGFGWMG 290 (375)
Q Consensus 267 i~~g~~--~~~~l~~~g~vy~~G~n~ 290 (375)
++...+ +.+....+|.|+.|-...
T Consensus 251 ~~~~~~~~~l~~~~~dg~i~vwd~~~ 276 (408)
T 4a11_B 251 LCFTSDGLHLLTVGTDNRMRLWNSSN 276 (408)
T ss_dssp EEECTTSSEEEEEETTSCEEEEETTT
T ss_pred EEEcCCCCEEEEecCCCeEEEEECCC
Confidence 665433 455566889999998654
No 34
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=91.75 E-value=8.9 Score=36.21 Aligned_cols=149 Identities=6% Similarity=-0.030 Sum_probs=77.6
Q ss_pred CCEEEEEeCCCeEEEEEC-CCcEEEEeCCCCCccCCCCCCCccCceeeeccccCCccEEEEEcC--CCeEEEEeCCCCEE
Q 017198 156 GSVVQIAAGPSYMLAVTG-NGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAG--DEHVVALDSSGYVY 232 (375)
Q Consensus 156 ~~i~~i~~g~~~~~~lt~-~g~v~~~G~n~~gqlg~~~~~~~~~p~~i~~~~~~~~~i~~i~~g--~~~~~~lt~~g~v~ 232 (375)
..+..++....+.+.-.. +|.|+.|-.... .... ..+......|..++.. ..+.+.-..+|.|+
T Consensus 447 ~~~~~~~~~~~~l~~~~~~d~~i~~~~~~~~------------~~~~-~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~ 513 (615)
T 1pgu_A 447 SPGSAVSLSQNYVAVGLEEGNTIQVFKLSDL------------EVSF-DLKTPLRAKPSYISISPSETYIAAGDVMGKIL 513 (615)
T ss_dssp SCEEEEEECSSEEEEEETTTSCEEEEETTEE------------EEEE-ECSSCCSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred CCceEEEEcCCEEEEeecCCCeEEEEECCCc------------cccc-cccCCccCceEEEEECCCCCEEEEcCCCCeEE
Confidence 567777766555555666 889999865321 0000 1222223356666654 34455557889999
Q ss_pred EEeCCCCCCCCCCCCCCcccCeeccCCCCCceEEEEec------------CCcEEEEEcCCcEEEEeCCCCCCCCCCCCC
Q 017198 233 TWGKGYCGALGHGDEIDKTLPEPLSSLKSHLAVQVCAR------------KRKTFVLVDTGSVYGFGWMGFGSLGFPDRG 300 (375)
Q Consensus 233 ~~G~n~~gqlg~~~~~~~~~p~~i~~~~~~~i~~i~~g------------~~~~~~l~~~g~vy~~G~n~~gqlg~~~~~ 300 (375)
.|-......+ ..+.......|..++.. ....+.-..||.|+.|-.....++
T Consensus 514 iw~~~~~~~~-----------~~~~~~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~------ 576 (615)
T 1pgu_A 514 LYDLQSREVK-----------TSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKI------ 576 (615)
T ss_dssp EEETTTTEEE-----------ECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCC------
T ss_pred EeeCCCCcce-----------eEeecCCCCceeEEEEcCccccccccccCCCEEEEEcCCCcEEEEECCCCcee------
Confidence 9965321111 11111133456666653 334444567899999975332110
Q ss_pred CCCceecceEcCccCCCcEEEEEeCCCc-eEEEEcCCCEEEee
Q 017198 301 VSDKVLRPRILDSLRAHHVSQISTGLYH-TVVVTDRGRLFGFG 342 (375)
Q Consensus 301 ~~~~~~~p~~~~~~~~~~i~~i~~G~~h-~~~l~~~g~v~~wG 342 (375)
...+. .....|..++..... .+....||.|..|=
T Consensus 577 -------~~~~~-~h~~~v~~l~~s~~~~l~s~~~d~~v~iw~ 611 (615)
T 1pgu_A 577 -------IKALN-AHKDGVNNLLWETPSTLVSSGADACIKRWN 611 (615)
T ss_dssp -------EEETT-SSTTCEEEEEEEETTEEEEEETTSCEEEEE
T ss_pred -------chhhh-cCccceEEEEEcCCCCeEEecCCceEEEEe
Confidence 01111 112356666544322 44445788888883
No 35
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=91.65 E-value=6.2 Score=34.22 Aligned_cols=190 Identities=11% Similarity=-0.071 Sum_probs=100.7
Q ss_pred CCEEEEecCCc-----eEEEEEcCCcEEEeeCCCCCcccCCCCCCceecCEEccccCCcCeEEEEcc--CCeEEEEEcCC
Q 017198 50 AHVVQVSASEN-----HAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAG--LNFTGFLTIRG 122 (375)
Q Consensus 50 ~~i~~i~~g~~-----~~~~lt~~g~vy~~G~n~~gqlg~~~~~~~~~~p~~i~~~~~~~i~~v~~g--~~~~~~lt~~g 122 (375)
..|..|+.... ..+.-..||.|..|-....++ .....+.. ....|..++.. ....+....||
T Consensus 40 ~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~----------~~~~~~~~-h~~~v~~~~~~~~~~~l~s~~~dg 108 (368)
T 3mmy_A 40 DSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQ----------TIPKAQQM-HTGPVLDVCWSDDGSKVFTASCDK 108 (368)
T ss_dssp SCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSC----------EEEEEEEE-CSSCEEEEEECTTSSEEEEEETTS
T ss_pred CceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCc----------eeEEEecc-ccCCEEEEEECcCCCEEEEEcCCC
Confidence 47888887654 445556789999996554211 11111211 12346666543 34556677889
Q ss_pred CEEEEeCCCCCcccCCCCCCCCcceeecCCCCCCCEEEEEe--CCC--eEEEEECCCcEEEEeCCCCCccCCCCCCCccC
Q 017198 123 HVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAA--GPS--YMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQ 198 (375)
Q Consensus 123 ~v~~~G~n~~g~lg~~~~~~~~~p~~~~~~~~~~~i~~i~~--g~~--~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~ 198 (375)
.|..|-..... +..+. .....|..++. ..+ +.+.-..+|.|+.|-..... .
T Consensus 109 ~v~iwd~~~~~------------~~~~~--~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~-----------~ 163 (368)
T 3mmy_A 109 TAKMWDLSSNQ------------AIQIA--QHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSN-----------P 163 (368)
T ss_dssp EEEEEETTTTE------------EEEEE--ECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSS-----------C
T ss_pred cEEEEEcCCCC------------ceeec--cccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCc-----------E
Confidence 99999544221 11111 12256888775 433 34445678999999543211 1
Q ss_pred ceeeeccccCCccEEEEEcCCCeEEEEeCCCCEEEEeCCCCCCCCCCCCCCcccCeeccCCC--CCceEEEEecCCc---
Q 017198 199 PRAIQTFRRKGIHVVRVSAGDEHVVALDSSGYVYTWGKGYCGALGHGDEIDKTLPEPLSSLK--SHLAVQVCARKRK--- 273 (375)
Q Consensus 199 p~~i~~~~~~~~~i~~i~~g~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~p~~i~~~~--~~~i~~i~~g~~~--- 273 (375)
...+.. ...+..+.......++.+.++.+..|-..... .....+.... ...+..+......
T Consensus 164 ~~~~~~----~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (368)
T 3mmy_A 164 MMVLQL----PERCYCADVIYPMAVVATAERGLIVYQLENQP----------SEFRRIESPLKHQHRCVAIFKDKQNKPT 229 (368)
T ss_dssp SEEEEC----SSCEEEEEEETTEEEEEEGGGCEEEEECSSSC----------EEEEECCCSCSSCEEEEEEEECTTSCEE
T ss_pred EEEEec----CCCceEEEecCCeeEEEeCCCcEEEEEecccc----------chhhhccccccCCCceEEEcccCCCCCC
Confidence 111111 11455555556677788888999998653211 0111111111 1123333333333
Q ss_pred -EEEEEcCCcEEEEeCC
Q 017198 274 -TFVLVDTGSVYGFGWM 289 (375)
Q Consensus 274 -~~~l~~~g~vy~~G~n 289 (375)
.++-..+|.+..|-..
T Consensus 230 ~~~~~~~dg~i~i~~~~ 246 (368)
T 3mmy_A 230 GFALGSIEGRVAIHYIN 246 (368)
T ss_dssp EEEEEETTSEEEEEESS
T ss_pred eEEEecCCCcEEEEecC
Confidence 5666788989888754
No 36
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=91.23 E-value=6.2 Score=33.37 Aligned_cols=227 Identities=7% Similarity=-0.043 Sum_probs=118.2
Q ss_pred CEEEEec--CCceEEEEEcCCcEEEeeCCCCCcccCCCCCCceecCEEccccCCcCeEEEEccCCeEEEEEcCCCEEEEe
Q 017198 51 HVVQVSA--SENHAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGLNFTGFLTIRGHVHTCG 128 (375)
Q Consensus 51 ~i~~i~~--g~~~~~~lt~~g~vy~~G~n~~gqlg~~~~~~~~~~p~~i~~~~~~~i~~v~~g~~~~~~lt~~g~v~~~G 128 (375)
.|..++. .....+.-..||.+..|-..... . ..+..........|..++......+....+|.|..|-
T Consensus 61 ~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~------~----~~~~~~~~~~~~~i~~~~~~~~~l~~~~~d~~i~~~d 130 (313)
T 3odt_A 61 FLNSVCYDSEKELLLFGGKDTMINGVPLFATS------G----EDPLYTLIGHQGNVCSLSFQDGVVISGSWDKTAKVWK 130 (313)
T ss_dssp CEEEEEEETTTTEEEEEETTSCEEEEETTCCT------T----SCC-CEECCCSSCEEEEEEETTEEEEEETTSEEEEEE
T ss_pred cEEEEEECCCCCEEEEecCCCeEEEEEeeecC------C----CCcccchhhcccCEEEEEecCCEEEEEeCCCCEEEEc
Confidence 4554443 34556666678888877544411 0 0111111112336777777677777788899999993
Q ss_pred CCCCCcccCCCCCCCCcceeecCCCCCCCEEEEEe---CCCeEEEEECCCcEEEEeCCCCCccCCCCCCCccCceeeecc
Q 017198 129 SNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAA---GPSYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTF 205 (375)
Q Consensus 129 ~n~~g~lg~~~~~~~~~p~~~~~~~~~~~i~~i~~---g~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~p~~i~~~ 205 (375)
. + .....+... ...+..+.. .....+....+|.|..|-... ....+...
T Consensus 131 ~---~----------~~~~~~~~~--~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~-------------~~~~~~~~ 182 (313)
T 3odt_A 131 E---G----------SLVYNLQAH--NASVWDAKVVSFSENKFLTASADKTIKLWQNDK-------------VIKTFSGI 182 (313)
T ss_dssp T---T----------EEEEEEECC--SSCEEEEEEEETTTTEEEEEETTSCEEEEETTE-------------EEEEECSS
T ss_pred C---C----------cEEEecccC--CCceeEEEEccCCCCEEEEEECCCCEEEEecCc-------------eEEEEecc
Confidence 1 0 011111111 145655554 456667778899999995210 01111110
Q ss_pred ccCCccEEEEEcCC-CeEEEEeCCCCEEEEeCCCCCCCCCCCCCCcccCeeccCCCCCceEEEEecCC-cEEEEEcCCcE
Q 017198 206 RRKGIHVVRVSAGD-EHVVALDSSGYVYTWGKGYCGALGHGDEIDKTLPEPLSSLKSHLAVQVCARKR-KTFVLVDTGSV 283 (375)
Q Consensus 206 ~~~~~~i~~i~~g~-~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~p~~i~~~~~~~i~~i~~g~~-~~~~l~~~g~v 283 (375)
....|..++... ...++...+|.|+.|-...... ...+ ......|..++...+ ..++-..+|.|
T Consensus 183 --~~~~i~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~-----------~~~~-~~~~~~i~~~~~~~~~~l~~~~~dg~v 248 (313)
T 3odt_A 183 --HNDVVRHLAVVDDGHFISCSNDGLIKLVDMHTGDV-----------LRTY-EGHESFVYCIKLLPNGDIVSCGEDRTV 248 (313)
T ss_dssp --CSSCEEEEEEEETTEEEEEETTSEEEEEETTTCCE-----------EEEE-ECCSSCEEEEEECTTSCEEEEETTSEE
T ss_pred --CcccEEEEEEcCCCeEEEccCCCeEEEEECCchhh-----------hhhh-hcCCceEEEEEEecCCCEEEEecCCEE
Confidence 222455554432 2355567888999996532110 0111 112334666665433 45566788999
Q ss_pred EEEeCCCCCCCCCCCCCCCCceecceEcCccCCCcEEEEEeCCC-ceEEEEcCCCEEEeeCC
Q 017198 284 YGFGWMGFGSLGFPDRGVSDKVLRPRILDSLRAHHVSQISTGLY-HTVVVTDRGRLFGFGDN 344 (375)
Q Consensus 284 y~~G~n~~gqlg~~~~~~~~~~~~p~~~~~~~~~~i~~i~~G~~-h~~~l~~~g~v~~wG~n 344 (375)
+.|-..... ....+ ......|..++.... ..++-..||.|+.|=..
T Consensus 249 ~iwd~~~~~--------------~~~~~-~~~~~~i~~~~~~~~~~~~~~~~dg~i~iw~~~ 295 (313)
T 3odt_A 249 RIWSKENGS--------------LKQVI-TLPAISIWSVDCMSNGDIIVGSSDNLVRIFSQE 295 (313)
T ss_dssp EEECTTTCC--------------EEEEE-ECSSSCEEEEEECTTSCEEEEETTSCEEEEESC
T ss_pred EEEECCCCc--------------eeEEE-eccCceEEEEEEccCCCEEEEeCCCcEEEEeCC
Confidence 999632210 01111 122336777776433 35566788999999544
No 37
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=90.99 E-value=8.3 Score=34.44 Aligned_cols=145 Identities=12% Similarity=0.080 Sum_probs=83.6
Q ss_pred EecCCceEEEEEcCCcEEEeeCCCCCcccCCCCCCceecCEEccccCCcCeEEEEc--cCCeEEEEEcCCCEEEEeCCCC
Q 017198 55 VSASENHAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTA--GLNFTGFLTIRGHVHTCGSNTH 132 (375)
Q Consensus 55 i~~g~~~~~~lt~~g~vy~~G~n~~gqlg~~~~~~~~~~p~~i~~~~~~~i~~v~~--g~~~~~~lt~~g~v~~~G~n~~ 132 (375)
++......++...||.|+.|-....- ....+.......|..++. ...+.++-+.+|.|..|-....
T Consensus 99 ~~~s~~~l~~~~~d~~v~lw~~~~~~------------~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~ 166 (401)
T 4aez_A 99 LDWSNLNVVAVALERNVYVWNADSGS------------VSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQ 166 (401)
T ss_dssp EEECTTSEEEEEETTEEEEEETTTCC------------EEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTC
T ss_pred EeecCCCEEEEECCCeEEEeeCCCCc------------EeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCC
Confidence 55455678888899999999765411 111112112334555554 3345566677899999954321
Q ss_pred CcccCCCCCCCCcceeecCCCCCCCEEEEEeCCCeEEEEECCCcEEEEeCCCCCccCCCCCCCccCceeeeccccCCccE
Q 017198 133 GQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGPSYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHV 212 (375)
Q Consensus 133 g~lg~~~~~~~~~p~~~~~~~~~~~i~~i~~g~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~p~~i~~~~~~~~~i 212 (375)
.. ...+.. ....|..++......+.-..+|.|+.|-..... . .+..+......|
T Consensus 167 ~~-----------~~~~~~--~~~~v~~~~~~~~~l~~~~~dg~i~i~d~~~~~-----------~--~~~~~~~~~~~v 220 (401)
T 4aez_A 167 TK-----------LRTMAG--HQARVGCLSWNRHVLSSGSRSGAIHHHDVRIAN-----------H--QIGTLQGHSSEV 220 (401)
T ss_dssp CE-----------EEEECC--CSSCEEEEEEETTEEEEEETTSEEEEEETTSSS-----------C--EEEEEECCSSCE
T ss_pred eE-----------EEEecC--CCCceEEEEECCCEEEEEcCCCCEEEEecccCc-----------c--eeeEEcCCCCCe
Confidence 11 111111 125788888877777777899999999653211 1 111222233356
Q ss_pred EEEEcCC--CeEEEEeCCCCEEEEeCC
Q 017198 213 VRVSAGD--EHVVALDSSGYVYTWGKG 237 (375)
Q Consensus 213 ~~i~~g~--~~~~~lt~~g~v~~~G~n 237 (375)
..++... ...+.-+.+|.|+.|-..
T Consensus 221 ~~~~~~~~~~~l~s~~~d~~v~iwd~~ 247 (401)
T 4aez_A 221 CGLAWRSDGLQLASGGNDNVVQIWDAR 247 (401)
T ss_dssp EEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred eEEEEcCCCCEEEEEeCCCeEEEccCC
Confidence 6666543 344455778999999653
No 38
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=90.46 E-value=19 Score=37.69 Aligned_cols=230 Identities=10% Similarity=0.046 Sum_probs=105.6
Q ss_pred CEEEEec--CCceEEEEEcCCcEEEeeCCCCCcccCCCCCCceecCEEccccCCcCeEEEEcc-CCeEEEEEcCCCEEEE
Q 017198 51 HVVQVSA--SENHAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAG-LNFTGFLTIRGHVHTC 127 (375)
Q Consensus 51 ~i~~i~~--g~~~~~~lt~~g~vy~~G~n~~gqlg~~~~~~~~~~p~~i~~~~~~~i~~v~~g-~~~~~~lt~~g~v~~~ 127 (375)
.|..++. .....+.-..||.|..|-......+ .+. .....|..++.. ....++...+|.|+.|
T Consensus 1005 ~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~~~-------------~~~-~~~~~v~~~~~~~~~~l~~~~~dg~v~vw 1070 (1249)
T 3sfz_A 1005 AVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYV-------------FLQ-AHQETVKDFRLLQDSRLLSWSFDGTVKVW 1070 (1249)
T ss_dssp CCCCEEECSSSSCEEEECSSSBEEEEETTTTEEE-------------CCB-CCSSCEEEEEECSSSEEEEEESSSEEEEE
T ss_pred ceEEEEECCCCCEEEEEcCCCEEEEEECCCCceE-------------EEe-cCCCcEEEEEEcCCCcEEEEECCCcEEEE
Confidence 3444443 3344555557888988865441111 011 112234444433 3345567788999999
Q ss_pred eCCCCCcccCCCCCCCCcceeecCCCCCCCEEEEEeCC--CeEEEEECCCcEEEEeCCCCCccCCCCCCCccCceeeecc
Q 017198 128 GSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGP--SYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTF 205 (375)
Q Consensus 128 G~n~~g~lg~~~~~~~~~p~~~~~~~~~~~i~~i~~g~--~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~p~~i~~~ 205 (375)
-...... ...+.... ..|..++... .+.+.-..+|.|+.|-..... .+..+
T Consensus 1071 d~~~~~~-----------~~~~~~~~--~~v~~~~~s~d~~~l~s~s~d~~v~iwd~~~~~--------------~~~~l 1123 (1249)
T 3sfz_A 1071 NVITGRI-----------ERDFTCHQ--GTVLSCAISSDATKFSSTSADKTAKIWSFDLLS--------------PLHEL 1123 (1249)
T ss_dssp ETTTTCC-----------CEEEECCS--SCCCCEEECSSSSSCEEECCSSCCCEECSSSSS--------------CSBCC
T ss_pred ECCCCce-----------eEEEcccC--CcEEEEEECCCCCEEEEEcCCCcEEEEECCCcc--------------eeeee
Confidence 5432111 11111111 2344444332 234445567888888543211 11111
Q ss_pred ccCCccEEEEEcCCC--eEEEEeCCCCEEEEeCCCCCCCCCCCCCCcccCeec---cCCCCCceEEEEecCCcEEEEEcC
Q 017198 206 RRKGIHVVRVSAGDE--HVVALDSSGYVYTWGKGYCGALGHGDEIDKTLPEPL---SSLKSHLAVQVCARKRKTFVLVDT 280 (375)
Q Consensus 206 ~~~~~~i~~i~~g~~--~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~p~~i---~~~~~~~i~~i~~g~~~~~~l~~~ 280 (375)
......|..++...+ ..+.-+.+|.|+.|-......+. ...|... .......|..++...+...+++.+
T Consensus 1124 ~~h~~~v~~~~~s~dg~~lat~~~dg~i~vwd~~~~~~~~------~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~s~~ 1197 (1249)
T 3sfz_A 1124 KGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLH------SCAPISVEEGTATHGGWVTDVCFSPDSKTLVSAG 1197 (1249)
T ss_dssp CCCSSCEEEEEECSSSSEEEEEETTSCCCEEESSSSCCCC------CCCCCC-------CCSCCCEEEECTTSSCEEEES
T ss_pred ccCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCCCceEE------EeccccccccccccCceEEEEEECCCCCEEEECC
Confidence 112224666655433 34444678888888653321111 1111111 011223466666555554455556
Q ss_pred CcEEEEeCCCCCCCCCCCCCCCCceecceEcCccCCCcEEE--EEeCCCceEEEEcCCCEEEee
Q 017198 281 GSVYGFGWMGFGSLGFPDRGVSDKVLRPRILDSLRAHHVSQ--ISTGLYHTVVVTDRGRLFGFG 342 (375)
Q Consensus 281 g~vy~~G~n~~gqlg~~~~~~~~~~~~p~~~~~~~~~~i~~--i~~G~~h~~~l~~~g~v~~wG 342 (375)
|.|..|--.....+..- . .....|.. ++......+....+|.|+.|=
T Consensus 1198 g~v~vwd~~~g~~~~~~--------------~-~~~~~i~~~~~s~dg~~l~~~~~dg~v~vw~ 1246 (1249)
T 3sfz_A 1198 GYLKWWNVATGDSSQTF--------------Y-TNGTNLKKIHVSPDFRTYVTVDNLGILYILQ 1246 (1249)
T ss_dssp SSEEEBCSSSCBCCCCC--------------C-CSSCCCCCCEECSSSCCEEEECTTCCEEEEC
T ss_pred CeEEEEECCCCceeeee--------------e-ccCCcccEEEECCCCCEEEEecCCcEEEEEe
Confidence 88888864332211110 0 00112222 333334556667888999883
No 39
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=90.40 E-value=8.9 Score=33.81 Aligned_cols=249 Identities=7% Similarity=-0.050 Sum_probs=119.8
Q ss_pred CEEEEecC---CceEEEEEcCCcEEEeeCCCCCcccCCCCCCceecCEEccccCCcCeEEEEccC-----CeEEEEEcCC
Q 017198 51 HVVQVSAS---ENHAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGL-----NFTGFLTIRG 122 (375)
Q Consensus 51 ~i~~i~~g---~~~~~~lt~~g~vy~~G~n~~gqlg~~~~~~~~~~p~~i~~~~~~~i~~v~~g~-----~~~~~lt~~g 122 (375)
.|..++.. ....+.-..||.|..|-..... ....+.. ...+..+.... ...++-..+|
T Consensus 101 ~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~------------~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (408)
T 4a11_B 101 SVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQ------------TADVFNF--EETVYSHHMSPVSTKHCLVAVGTRGP 166 (408)
T ss_dssp CEEEEEECTTCTTCEEEEETTSEEEEEETTTTE------------EEEEEEC--SSCEEEEEECSSCSSCCEEEEEESSS
T ss_pred cEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCc------------cceeccC--CCceeeeEeecCCCCCcEEEEEcCCC
Confidence 67777753 3456666778999999654411 0111111 11333333322 2456667889
Q ss_pred CEEEEeCCCCCcccCCCCCCCCcceeecCCCCCCCEEEEEeCCC---eEEEEECCCcEEEEeCCCCCccCC-CCCCC-cc
Q 017198 123 HVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGPS---YMLAVTGNGVVYSFGSGSNFCLGH-GEQHD-EL 197 (375)
Q Consensus 123 ~v~~~G~n~~g~lg~~~~~~~~~p~~~~~~~~~~~i~~i~~g~~---~~~~lt~~g~v~~~G~n~~gqlg~-~~~~~-~~ 197 (375)
.|+.|-..... ....+... ...|..++.... ..+.-..+|.|..|-.......-. -.... ..
T Consensus 167 ~v~~~d~~~~~-----------~~~~~~~~--~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~ 233 (408)
T 4a11_B 167 KVQLCDLKSGS-----------CSHILQGH--RQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKK 233 (408)
T ss_dssp SEEEEESSSSC-----------CCEEECCC--CSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCS
T ss_pred eEEEEeCCCcc-----------eeeeecCC--CCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCccccccccccccc
Confidence 99999543211 11112211 156777776543 244567889999997644221100 00000 00
Q ss_pred CceeeeccccCCccEEEEEcCC--CeEEEEeCCCCEEEEeCCCCCCCCCCCCCCcccCeeccCCCCCceEEEEecCCcEE
Q 017198 198 QPRAIQTFRRKGIHVVRVSAGD--EHVVALDSSGYVYTWGKGYCGALGHGDEIDKTLPEPLSSLKSHLAVQVCARKRKTF 275 (375)
Q Consensus 198 ~p~~i~~~~~~~~~i~~i~~g~--~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~p~~i~~~~~~~i~~i~~g~~~~~ 275 (375)
..............|..++... .+.+....+|.|..|-......+-.-. ............+..........+
T Consensus 234 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~ 308 (408)
T 4a11_B 234 SQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNY-----GKVCNNSKKGLKFTVSCGCSSEFV 308 (408)
T ss_dssp CCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCBCCCCC-----CCCCCCCSSCCCCEECCSSSSCEE
T ss_pred ceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEEECCCCccceecc-----ccccccccccceeEEecCCCceEE
Confidence 0000011111233566666644 355566789999999764322111000 000000111112222223345556
Q ss_pred EEEcCCcEEEEeCCCCCCCCCCCCCCCCceecceEcCccCCCcEEEEEeCCC--ceEEEEcCCCEEEeeCCCC
Q 017198 276 VLVDTGSVYGFGWMGFGSLGFPDRGVSDKVLRPRILDSLRAHHVSQISTGLY--HTVVVTDRGRLFGFGDNER 346 (375)
Q Consensus 276 ~l~~~g~vy~~G~n~~gqlg~~~~~~~~~~~~p~~~~~~~~~~i~~i~~G~~--h~~~l~~~g~v~~wG~n~~ 346 (375)
+...++.|+.|-...... ...+. .....|..++.... ..+.-..||.|..|=....
T Consensus 309 ~~~~~~~i~v~d~~~~~~--------------~~~~~-~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~ 366 (408)
T 4a11_B 309 FVPYGSTIAVYTVYSGEQ--------------ITMLK-GHYKTVDCCVFQSNFQELYSGSRDCNILAWVPSLY 366 (408)
T ss_dssp EEEETTEEEEEETTTCCE--------------EEEEC-CCSSCEEEEEEETTTTEEEEEETTSCEEEEEECC-
T ss_pred EEecCCEEEEEECcCCcc--------------eeeec-cCCCeEEEEEEcCCCCEEEEECCCCeEEEEeCCCC
Confidence 667889999997432110 11111 11235666665433 3444557899999965543
No 40
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=89.24 E-value=11 Score=33.20 Aligned_cols=122 Identities=12% Similarity=0.061 Sum_probs=64.7
Q ss_pred CCEEEEecCCceEEEEEcCCcEEEeeCCCCCcccCCCCCCceecCEEccccCCcCeEEEEcc------C---CeEEEEEc
Q 017198 50 AHVVQVSASENHAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAG------L---NFTGFLTI 120 (375)
Q Consensus 50 ~~i~~i~~g~~~~~~lt~~g~vy~~G~n~~gqlg~~~~~~~~~~p~~i~~~~~~~i~~v~~g------~---~~~~~lt~ 120 (375)
..|..|+......+.-..||.|+.|-...... .........+. .....|..++.. . ...+....
T Consensus 17 ~~i~~~~~~~~~l~s~~~dg~i~iw~~~~~~~------~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~ 89 (397)
T 1sq9_A 17 ADIFSVSACNSFTVSCSGDGYLKVWDNKLLDN------ENPKDKSYSHF-VHKSGLHHVDVLQAIERDAFELCLVATTSF 89 (397)
T ss_dssp SCEEEEEECSSEEEEEETTSEEEEEESBCCTT------CCGGGGEEEEE-CCTTCEEEEEEEEEEETTTEEEEEEEEEET
T ss_pred cCeEEEEecCCeEEEEcCCCEEEEEECCCccc------ccCCCcceEEe-cCCCcEEEEEEecccccCCccccEEEEEcC
Confidence 37888887777777777899999997654210 00011112222 223345655543 2 34555677
Q ss_pred CCCEEEEeCCCCCcccCCCCCCCCcceeecCCCC---CCCEEEEEeC------CCe-EEEEECCCcEEEEeCCC
Q 017198 121 RGHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEE---VGSVVQIAAG------PSY-MLAVTGNGVVYSFGSGS 184 (375)
Q Consensus 121 ~g~v~~~G~n~~g~lg~~~~~~~~~p~~~~~~~~---~~~i~~i~~g------~~~-~~~lt~~g~v~~~G~n~ 184 (375)
+|.|+.|-...... ........+..... ...|..++.. ..+ .+....+|.|+.|-...
T Consensus 90 dg~i~iw~~~~~~~------~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 157 (397)
T 1sq9_A 90 SGDLLFYRITREDE------TKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHP 157 (397)
T ss_dssp TSCEEEEEEEECTT------TCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEES
T ss_pred CCCEEEEEccCCcc------cccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCc
Confidence 89999985432110 00000112221110 1567777765 344 55557889999996543
No 41
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=89.24 E-value=9.6 Score=32.52 Aligned_cols=215 Identities=13% Similarity=0.036 Sum_probs=121.1
Q ss_pred CEEEEec--CCceEEEEEcCCcEEEeeCCCCCcccCCCCCCceecCEEccccCCcCeEEEEcc---CCeEEEEEcCCCEE
Q 017198 51 HVVQVSA--SENHAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAG---LNFTGFLTIRGHVH 125 (375)
Q Consensus 51 ~i~~i~~--g~~~~~~lt~~g~vy~~G~n~~gqlg~~~~~~~~~~p~~i~~~~~~~i~~v~~g---~~~~~~lt~~g~v~ 125 (375)
.+..+.. ...+.+++|++|++|..-..+ +.... ..- + ..++.+|..+.+- ....+++|++|.+.
T Consensus 25 ~~~~~~~~~t~~~ll~fT~~G~v~~~~~~~---lp~~~-----~~~--l-l~~~e~i~~v~~~~~~~~~~v~~T~~G~iK 93 (276)
T 3no0_A 25 PVVNILRVPFTEGLFLVSNRGRVYWIAGSQ---ALQGS-----KVS--L-KSREEKIVGAFIREKFGNRLLLATKKGYVK 93 (276)
T ss_dssp CEEEEEEEETTSCEEEEETTSEEEEECSHH---HHTSE-----ECC--C-SSTTCCEEEEEEGGGSCSEEEEEETTSEEE
T ss_pred eEEEEEEECCCCEEEEEcCCCeEEEEEhhh---CccCc-----ccc--c-CCCCCEEEEEECCcCCCCEEEEEeCCCEEE
Confidence 4444333 356789999999999864333 11100 000 3 3356778887651 24688899999988
Q ss_pred EEeCCCCCcccCCCCCCCCcceeecCCCCCCCEEEEEe--CCCeEEEEECCCcEEEEeCCCCCccCCCCCCCccCceeee
Q 017198 126 TCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAA--GPSYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQ 203 (375)
Q Consensus 126 ~~G~n~~g~lg~~~~~~~~~p~~~~~~~~~~~i~~i~~--g~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~p~~i~ 203 (375)
-.-..++.+ .........+.+.+.++.+.. +..+.+++|++|++|.+-......++....- ....
T Consensus 94 r~~l~~~~~--------~~~G~~~i~lkegD~l~~~~~~~~~~~ill~T~~G~~~r~~~~eip~~gR~a~G-----v~~i 160 (276)
T 3no0_A 94 KIPLAEFEY--------KAQGMPIIKLTEGDEVVSIASSVDETHILLFTKKGRVARFSVREVPPSTPGARG-----VQGI 160 (276)
T ss_dssp EEEGGGTTT--------CSTTEECSCCCTTCCEEEEEECCSSCEEEEEETTSEEEEEEGGGSCBCCTTCCC-----EECC
T ss_pred EEEHHHhhh--------hcCCeEEEecCCCCEEEEEEEeCCCCEEEEEECCCEEEEEEhhhCCCcCCCCCC-----EEEE
Confidence 876544321 011222222333356666554 3567899999999999987665544432221 1111
Q ss_pred ccccCCccEEEEEcC--CCeEEEEeCCCCEEEEeCCCCCCCCCCCCCCcccCeeccCCCCCceEEEE--ecCCcEEEEEc
Q 017198 204 TFRRKGIHVVRVSAG--DEHVVALDSSGYVYTWGKGYCGALGHGDEIDKTLPEPLSSLKSHLAVQVC--ARKRKTFVLVD 279 (375)
Q Consensus 204 ~~~~~~~~i~~i~~g--~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~p~~i~~~~~~~i~~i~--~g~~~~~~l~~ 279 (375)
.+. .+.+|+.+... ....+++|++|.+.-.-...+-..+.+....... ..+..++.+. .+++..+++++
T Consensus 161 ~L~-~~d~vv~~~~~~~~~~ll~~T~~G~~kr~~~~e~~~~~R~gkGv~~i------~~~~~lv~~~~~~~~~~i~~~t~ 233 (276)
T 3no0_A 161 KLE-KNDETSGLRIWNGEPYLLVITAKGRVKKISHEEIPKTNRGVKGTEVS------GTKDTLVDLIPIKEEVELLITTK 233 (276)
T ss_dssp CCC-TTCCEEEEEEESSCSEEEEEETTSCEEEEEGGGSCCCCTTCCCEECC------CSSSCEEEEEEESSEEEEEEEET
T ss_pred ccC-CCCEEEEEEEeCCCCEEEEEeCCCcEEEeEHHHcccCCCCCcceEEE------cCCCcEEEEEEeCCCCEEEEEcC
Confidence 222 22356655433 3467788999988877654444333322211111 1233344432 34567888999
Q ss_pred CCcEEE--EeCCCCCCCCC
Q 017198 280 TGSVYG--FGWMGFGSLGF 296 (375)
Q Consensus 280 ~g~vy~--~G~n~~gqlg~ 296 (375)
+|++.. +-..+.-.+|.
T Consensus 234 ~G~~ir~~~~~~~i~~~~R 252 (276)
T 3no0_A 234 NGKAFYDKINQKDIPLSTK 252 (276)
T ss_dssp TSCEEEEEEEGGGSCBCCT
T ss_pred CCeEEEeeeCHHHCCCcCC
Confidence 999988 76555444443
No 42
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=88.90 E-value=12 Score=33.26 Aligned_cols=100 Identities=10% Similarity=0.043 Sum_probs=54.0
Q ss_pred CCceEEEEEcCCcEEEeeCCCCCcccCCCCCCceecCEEccccCCcCeEEEEcc--CCeEEEEEcCCCEEEEeCCCCCcc
Q 017198 58 SENHAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAG--LNFTGFLTIRGHVHTCGSNTHGQL 135 (375)
Q Consensus 58 g~~~~~~lt~~g~vy~~G~n~~gqlg~~~~~~~~~~p~~i~~~~~~~i~~v~~g--~~~~~~lt~~g~v~~~G~n~~g~l 135 (375)
.....+.-..||.|..|-.... .+..........|..++.. ....+.-..||.|+.|-.....
T Consensus 108 ~~~~l~~~~~dg~i~iwd~~~~-------------~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~-- 172 (420)
T 3vl1_A 108 QMRRFILGTTEGDIKVLDSNFN-------------LQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGS-- 172 (420)
T ss_dssp SSCEEEEEETTSCEEEECTTSC-------------EEEEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCC--
T ss_pred CCCEEEEEECCCCEEEEeCCCc-------------ceeeecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCc--
Confidence 3445555667888998853321 1111111123356666553 3355566778999999543211
Q ss_pred cCCCCCCCCcceeecCCCCCCCEEEEEeCC--CeEEEEECCCcEEEEeCC
Q 017198 136 GHGDTLDRPTPKSIAPLEEVGSVVQIAAGP--SYMLAVTGNGVVYSFGSG 183 (375)
Q Consensus 136 g~~~~~~~~~p~~~~~~~~~~~i~~i~~g~--~~~~~lt~~g~v~~~G~n 183 (375)
....+... ...|..++... ...+.-..+|.|..|-..
T Consensus 173 ---------~~~~~~~h--~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~ 211 (420)
T 3vl1_A 173 ---------NPRTLIGH--RATVTDIAIIDRGRNVLSASLDGTIRLWECG 211 (420)
T ss_dssp ---------CCEEEECC--SSCEEEEEEETTTTEEEEEETTSCEEEEETT
T ss_pred ---------CceEEcCC--CCcEEEEEEcCCCCEEEEEcCCCcEEEeECC
Confidence 11122211 14677776643 345555778899999653
No 43
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=88.65 E-value=11 Score=32.46 Aligned_cols=196 Identities=11% Similarity=-0.009 Sum_probs=98.6
Q ss_pred CCEEEEecCC-----ceEEEEEcCCcEEEeeCCCCCcccCCCCCCceecCEEccccCCcCeEEEE--------ccCCeEE
Q 017198 50 AHVVQVSASE-----NHAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVT--------AGLNFTG 116 (375)
Q Consensus 50 ~~i~~i~~g~-----~~~~~lt~~g~vy~~G~n~~gqlg~~~~~~~~~~p~~i~~~~~~~i~~v~--------~g~~~~~ 116 (375)
..|..++... ...+.-..||.|..|-..... .....+.. ....|..+. ......+
T Consensus 66 ~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-----------~~~~~~~~-~~~~v~~~~~~~~~~~s~~~~~l~ 133 (357)
T 3i2n_A 66 KPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPE-----------MPVYSVKG-HKEIINAIDGIGGLGIGEGAPEIV 133 (357)
T ss_dssp SCEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCS-----------SCSEEECC-CSSCEEEEEEESGGGCC-CCCEEE
T ss_pred CcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCC-----------ccEEEEEe-cccceEEEeeccccccCCCccEEE
Confidence 3777777754 445556678999999655421 01111111 122455552 2334556
Q ss_pred EEEcCCCEEEEeCCCCCcccCCCCCCCCcceeecCCCC--CCCEEEEE------eCCCeEEEEECCCcEEEEeCCCCCcc
Q 017198 117 FLTIRGHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEE--VGSVVQIA------AGPSYMLAVTGNGVVYSFGSGSNFCL 188 (375)
Q Consensus 117 ~lt~~g~v~~~G~n~~g~lg~~~~~~~~~p~~~~~~~~--~~~i~~i~------~g~~~~~~lt~~g~v~~~G~n~~gql 188 (375)
.-..+|.|..|-...... ....+..... ...+..++ ....+.+.-..+|.|+.|-.....
T Consensus 134 ~~~~d~~i~vwd~~~~~~----------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~-- 201 (357)
T 3i2n_A 134 TGSRDGTVKVWDPRQKDD----------PVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMA-- 201 (357)
T ss_dssp EEETTSCEEEECTTSCSS----------CSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTE--
T ss_pred EEeCCCeEEEEeCCCCCC----------cceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCc--
Confidence 667889999994432110 1111111111 13566666 234555556778999999653211
Q ss_pred CCCCCCCccCceeeeccccCCccEEEEEcCC-----CeEEEEeCCCCEEEEeCCCCCCCCCCCCCCcccCeeccCCCCCc
Q 017198 189 GHGEQHDELQPRAIQTFRRKGIHVVRVSAGD-----EHVVALDSSGYVYTWGKGYCGALGHGDEIDKTLPEPLSSLKSHL 263 (375)
Q Consensus 189 g~~~~~~~~~p~~i~~~~~~~~~i~~i~~g~-----~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~p~~i~~~~~~~ 263 (375)
+..... ....|..++... ...++-..+|.|+.|-......+ ...+..........
T Consensus 202 ----------~~~~~~---~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~-------~~~~~~~~~~~~~~ 261 (357)
T 3i2n_A 202 ----------LRWETN---IKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPT-------KGFASVSEKAHKST 261 (357)
T ss_dssp ----------EEEEEE---CSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETT-------TEEEEEEEECCSSC
T ss_pred ----------eeeecC---CCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcc-------cceeeeccCCCcCC
Confidence 111111 122566666543 44555678899998864221000 00000000123345
Q ss_pred eEEEEecCCc---EEEEEcCCcEEEEeCC
Q 017198 264 AVQVCARKRK---TFVLVDTGSVYGFGWM 289 (375)
Q Consensus 264 i~~i~~g~~~---~~~l~~~g~vy~~G~n 289 (375)
|..++...+. .+.-..+|.|+.|-..
T Consensus 262 v~~~~~~~~~~~~l~~~~~dg~i~iwd~~ 290 (357)
T 3i2n_A 262 VWQVRHLPQNRELFLTAGGAGGLHLWKYE 290 (357)
T ss_dssp EEEEEEETTEEEEEEEEETTSEEEEEEEE
T ss_pred EEEEEECCCCCcEEEEEeCCCcEEEeecC
Confidence 7777665543 3344578999999754
No 44
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=88.64 E-value=11 Score=32.28 Aligned_cols=18 Identities=17% Similarity=0.185 Sum_probs=13.0
Q ss_pred CeeEEEeCCcEEEEeCCC
Q 017198 8 YHTLLISNSSVFSCGSSL 25 (375)
Q Consensus 8 ~~~~~l~~g~l~~wG~n~ 25 (375)
.|++++-+++||++|-..
T Consensus 48 ~~~~~~~~~~lyv~GG~~ 65 (306)
T 3ii7_A 48 DAACVFWDNVVYILGGSQ 65 (306)
T ss_dssp SCEEEEETTEEEEECCBS
T ss_pred eeEEEEECCEEEEEeCCC
Confidence 455555888999999643
No 45
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=88.61 E-value=12 Score=32.65 Aligned_cols=262 Identities=10% Similarity=0.096 Sum_probs=135.3
Q ss_pred CeeEEE-eCCcEEEEeCCCCCccCCCCCCCeeeeeeeecCCCCCCEEE--EecCCceEEEEEcCCcEEEeeCCCCCcccC
Q 017198 8 YHTLLI-SNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQ--VSASENHAAFVLQSGQVFTCGDNSSFCCGH 84 (375)
Q Consensus 8 ~~~~~l-~~g~l~~wG~n~~g~Lg~~~~~~~~~~~~~~~~~~~~~i~~--i~~g~~~~~~lt~~g~vy~~G~n~~gqlg~ 84 (375)
...+++ ++|.+---=-..+.....+ ..-..-+.+.+...++. ++...+..+++|+.|++|.+-..+--..+.
T Consensus 9 ~~~v~~T~~G~iKr~~~~~~~~~~~~-----~~g~~~~~lke~D~l~~~~~~~~~~~ll~~T~~G~~~~~~~~~ip~~~r 83 (312)
T 1suu_A 9 NIVVMLTKKGFLKRLSQNEYKLQGTG-----GKGLSSFDLNDGDEIVIALCVNTHDYLFMISNEGKLYLINAYEIKDSSR 83 (312)
T ss_dssp EEEEEEETTCBEEEEEGGGSCBCCSS-----CCCEECCCCCTTCCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCC---
T ss_pred CEEEEEeCCCEEEEeEHHHhhccccC-----CCCceecccCCCCEEEEEEEECCCCEEEEEECCCeEEEEEHHHCCCCCc
Confidence 344555 7777765533222111110 00122334444444544 445678899999999999986554211111
Q ss_pred CCCCCceecCEEccccCCcCeEEEEcc-----CCeEEEEEcCCCEEEEeCCCCCcccCCCCCCCCcceeecCCCCCCCEE
Q 017198 85 RDTNRPIFRPRLVEALKGVPCKQVTAG-----LNFTGFLTIRGHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVV 159 (375)
Q Consensus 85 ~~~~~~~~~p~~i~~~~~~~i~~v~~g-----~~~~~~lt~~g~v~~~G~n~~g~lg~~~~~~~~~p~~~~~~~~~~~i~ 159 (375)
.... ......+...++.+|..+... ..+.+++|++|.++-.-..++-.. .........+....+++
T Consensus 84 ~~~G--~~i~~~l~l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~~~-------r~~G~~~i~L~~~d~lv 154 (312)
T 1suu_A 84 ASKG--QNISELINLGDQEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAV-------KSRGVIVIKLNDKDFVT 154 (312)
T ss_dssp ------CBGGGTSCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC-----------CEECBCCCTTCCEE
T ss_pred cCCC--cChhhccCCCCCCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhhcc-------CCCcEEEEecCCCCEEE
Confidence 1111 111122333446677777554 456889999999998866543211 01122222333346676
Q ss_pred EEEe--CCCeEEEEECCCcEEEEeCCCCCccCCCCCCCccCceeeeccccCCccEEEEEc--CCCeEEEEeCCCCEEEEe
Q 017198 160 QIAA--GPSYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSA--GDEHVVALDSSGYVYTWG 235 (375)
Q Consensus 160 ~i~~--g~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~p~~i~~~~~~~~~i~~i~~--g~~~~~~lt~~g~v~~~G 235 (375)
.+.. +....+++|++|.+..+-......+|... .-.+...+. .+..++.+.. ...+.++++++|.+...-
T Consensus 155 ~~~~~~~~~~i~l~T~~G~~~r~~~~ev~~~gR~~-----~Gv~~i~L~-~~d~vv~~~~v~~~~~l~~vt~~G~~kr~~ 228 (312)
T 1suu_A 155 SAEIVFKDEKVICLSKKGSAFIFNSRDVRLTNRGT-----QGVCGMKLK-EGDLFVKVLSVKENPYLLIVSENGYGKRLN 228 (312)
T ss_dssp EEEEECTTCEEEEEETTSEEEEEEGGGSCBCCTTB-----CCEECCCCC-TTCCEEEEEECTTCSEEEEEETTSEEEEEE
T ss_pred EEEEeCCCCEEEEEeCCCcEEEEEHHHccccCCCC-----CCeEeEEeC-CCCEEEEEEEECCCCeEEEEECCCceEEEE
Confidence 6654 45678899999999998776544333321 111222222 1224555433 345677889999877776
Q ss_pred CCCCCCCCCCCCCCcccCeeccCCCCCceEEE--EecCCcEEEEEcCCcEEEEeCCCC
Q 017198 236 KGYCGALGHGDEIDKTLPEPLSSLKSHLAVQV--CARKRKTFVLVDTGSVYGFGWMGF 291 (375)
Q Consensus 236 ~n~~gqlg~~~~~~~~~p~~i~~~~~~~i~~i--~~g~~~~~~l~~~g~vy~~G~n~~ 291 (375)
...+-..+.+....... . +....+..+..+ ....+..+++++.|++...-.++.
T Consensus 229 ~~e~~~~~R~~kGv~~~-~-~~k~~~~~lv~~~~~~~~~~l~~~t~~g~~~r~~~~~i 284 (312)
T 1suu_A 229 MSKISELKRGATGYTSY-K-KSDKKAGSVVDAIAVSEDDEILLVSKRSKALRTVAGKV 284 (312)
T ss_dssp GGGSCBCCTTCCCEECS-C-TTCTTTCSEEEEEEECTTCEEEEEETTCEEEEEEGGGS
T ss_pred HHHhcccCCCCCCEEee-E-ccCCCCCeEEEEEEeCCCCEEEEEeCCCeEEEEEcccC
Confidence 66655555443322211 1 110112234332 234566677788887766554443
No 46
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=88.40 E-value=13 Score=32.91 Aligned_cols=198 Identities=12% Similarity=0.057 Sum_probs=93.8
Q ss_pred CEEEEecC--CceEEEEEcCCcEEEeeCCCCCcccCCCCCCceecCEEc----cccCCcCeEEEEc-cCCeEEEEEcCCC
Q 017198 51 HVVQVSAS--ENHAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLV----EALKGVPCKQVTA-GLNFTGFLTIRGH 123 (375)
Q Consensus 51 ~i~~i~~g--~~~~~~lt~~g~vy~~G~n~~gqlg~~~~~~~~~~p~~i----~~~~~~~i~~v~~-g~~~~~~lt~~g~ 123 (375)
.|..++.. ....+....||.|+.|-......+..-.... ..+..+ .......+..+.. .....++.+.+|.
T Consensus 151 ~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 228 (425)
T 1r5m_A 151 PIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKE--TGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGA 228 (425)
T ss_dssp CEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEECCC-----------------CCCBSCCEEEETTEEEEECGGGC
T ss_pred cEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeccc--cCccceeeccccCCcceeeEEEEcCCCEEEEEcCCCe
Confidence 67666654 4456666778999999765422111000000 000000 0000000111111 1244566777888
Q ss_pred EEEEeCCCCCcccCCCCCCCCcceeecCCCCCCCEEEEEeC--CCeEEEEECCCcEEEEeCCCCCccCCCCCCCccCcee
Q 017198 124 VHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAG--PSYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRA 201 (375)
Q Consensus 124 v~~~G~n~~g~lg~~~~~~~~~p~~~~~~~~~~~i~~i~~g--~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~p~~ 201 (375)
|+.|-..... ....+... ...|..++.. ..+.+.-..+|.|+.|-.... .....
T Consensus 229 i~~~d~~~~~-----------~~~~~~~~--~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~-----------~~~~~ 284 (425)
T 1r5m_A 229 IFVYQITEKT-----------PTGKLIGH--HGPISVLEFNDTNKLLLSASDDGTLRIWHGGNG-----------NSQNC 284 (425)
T ss_dssp EEEEETTCSS-----------CSEEECCC--SSCEEEEEEETTTTEEEEEETTSCEEEECSSSB-----------SCSEE
T ss_pred EEEEEcCCCc-----------eeeeeccC--CCceEEEEECCCCCEEEEEcCCCEEEEEECCCC-----------ccceE
Confidence 9988544211 11111111 1456666654 345555667899999954321 11111
Q ss_pred eeccccCCccEEEEEcCCC-eEEEEeCCCCEEEEeCCCCCCCCCCCCCCcccCeeccCCCCCceEEEEec--CCcEEEEE
Q 017198 202 IQTFRRKGIHVVRVSAGDE-HVVALDSSGYVYTWGKGYCGALGHGDEIDKTLPEPLSSLKSHLAVQVCAR--KRKTFVLV 278 (375)
Q Consensus 202 i~~~~~~~~~i~~i~~g~~-~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~p~~i~~~~~~~i~~i~~g--~~~~~~l~ 278 (375)
+ ......|..++.... ..++...+|.|+.|-..... +..........|..++.. ....++-.
T Consensus 285 ~---~~~~~~i~~~~~~~~~~l~~~~~d~~i~i~d~~~~~------------~~~~~~~~~~~i~~~~~s~~~~~l~~~~ 349 (425)
T 1r5m_A 285 F---YGHSQSIVSASWVGDDKVISCSMDGSVRLWSLKQNT------------LLALSIVDGVPIFAGRISQDGQKYAVAF 349 (425)
T ss_dssp E---CCCSSCEEEEEEETTTEEEEEETTSEEEEEETTTTE------------EEEEEECTTCCEEEEEECTTSSEEEEEE
T ss_pred e---cCCCccEEEEEECCCCEEEEEeCCCcEEEEECCCCc------------EeEecccCCccEEEEEEcCCCCEEEEEE
Confidence 1 112225666655433 55556788999999643210 111111123346666554 33444456
Q ss_pred cCCcEEEEeCC
Q 017198 279 DTGSVYGFGWM 289 (375)
Q Consensus 279 ~~g~vy~~G~n 289 (375)
.+|.|+.|-..
T Consensus 350 ~dg~i~i~~~~ 360 (425)
T 1r5m_A 350 MDGQVNVYDLK 360 (425)
T ss_dssp TTSCEEEEECH
T ss_pred CCCeEEEEECC
Confidence 78899998743
No 47
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=88.05 E-value=18 Score=34.09 Aligned_cols=229 Identities=7% Similarity=-0.068 Sum_probs=109.9
Q ss_pred CCceEEEEEcCCcEEEeeCCCCCcccCCCCCCceecCEEccccCCcCeEEEEccCCeEEEEEcCCCEEEEeCCCCCcccC
Q 017198 58 SENHAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGLNFTGFLTIRGHVHTCGSNTHGQLGH 137 (375)
Q Consensus 58 g~~~~~~lt~~g~vy~~G~n~~gqlg~~~~~~~~~~p~~i~~~~~~~i~~v~~g~~~~~~lt~~g~v~~~G~n~~g~lg~ 137 (375)
.....+.-..||.++.|-... ..+..........|..++. .. .+....+|.|..|-.. .
T Consensus 308 ~~~~l~~~~~~g~i~~~d~~~-------------~~~~~~~~~~~~~v~~~~~-~~-l~~~~~dg~i~~w~~~---~--- 366 (615)
T 1pgu_A 308 GNGRIISLSLDGTLNFYELGH-------------DEVLKTISGHNKGITALTV-NP-LISGSYDGRIMEWSSS---S--- 366 (615)
T ss_dssp ETTEEEEEETTSCEEEEETTE-------------EEEEEEECCCSSCEEEEET-TT-TEEEETTSCEEETTTT---E---
T ss_pred CCCeEEEEECCCCEEEEECCC-------------CcEEEEEeCCCCCEEEEEe-cC-cEEECCCCeEEEEEch---h---
Confidence 456677777888898885443 1111111122346778887 66 6677888999998432 1
Q ss_pred CCCCCCCcceeecCCCCCCCEEEEEeC-CCeEEEEECCCcEEEEeCCCCCccC------CCCC---------C-----Cc
Q 017198 138 GDTLDRPTPKSIAPLEEVGSVVQIAAG-PSYMLAVTGNGVVYSFGSGSNFCLG------HGEQ---------H-----DE 196 (375)
Q Consensus 138 ~~~~~~~~p~~~~~~~~~~~i~~i~~g-~~~~~~lt~~g~v~~~G~n~~gqlg------~~~~---------~-----~~ 196 (375)
+. ......|..++.. ....+....++.+..|-........ .... . ..
T Consensus 367 -----------~~-~~~~~~v~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~ 434 (615)
T 1pgu_A 367 -----------MH-QDHSNLIVSLDNSKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQS 434 (615)
T ss_dssp -----------EE-CCCCSCEEEEECCSTTCCEEEETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEET
T ss_pred -----------hc-CcccCceEEEEECCCcEEEEEeCCCCEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCceEEEec
Confidence 11 1111345555543 2333344455555555321100000 0000 0 00
Q ss_pred cCceeeeccccCCccEEEEEcCCCeEEEEeC-CCCEEEEeCCCCCCCCCCCCCCcccCeeccCCCCCceEEEEec--CCc
Q 017198 197 LQPRAIQTFRRKGIHVVRVSAGDEHVVALDS-SGYVYTWGKGYCGALGHGDEIDKTLPEPLSSLKSHLAVQVCAR--KRK 273 (375)
Q Consensus 197 ~~p~~i~~~~~~~~~i~~i~~g~~~~~~lt~-~g~v~~~G~n~~gqlg~~~~~~~~~p~~i~~~~~~~i~~i~~g--~~~ 273 (375)
.....+..+. ....+..++......++-.. +|.|+.|-.... ...+..+ ......|..++.. +.+
T Consensus 435 ~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~d~~i~~~~~~~~----------~~~~~~~-~~~~~~v~~~~~s~~g~~ 502 (615)
T 1pgu_A 435 FTGDIIKSVR-LNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDL----------EVSFDLK-TPLRAKPSYISISPSETY 502 (615)
T ss_dssp TTCCEEEEEE-CSSCEEEEEECSSEEEEEETTTSCEEEEETTEE----------EEEEECS-SCCSSCEEEEEECTTSSE
T ss_pred cCCceeeecc-cCCCceEEEEcCCEEEEeecCCCeEEEEECCCc----------ccccccc-CCccCceEEEEECCCCCE
Confidence 0001111111 12245555555455555566 888888865321 0000111 1123346666653 344
Q ss_pred EEEEEcCCcEEEEeCCCCCCCCCCCCCCCCceecceEcCccCCCcEEEEEeCC------------CceEEEEcCCCEEEe
Q 017198 274 TFVLVDTGSVYGFGWMGFGSLGFPDRGVSDKVLRPRILDSLRAHHVSQISTGL------------YHTVVVTDRGRLFGF 341 (375)
Q Consensus 274 ~~~l~~~g~vy~~G~n~~gqlg~~~~~~~~~~~~p~~~~~~~~~~i~~i~~G~------------~h~~~l~~~g~v~~w 341 (375)
.+.-..+|.|+.|-......+ ..+.......|..++... ...+.-..||.|+.|
T Consensus 503 l~~~~~dg~i~iw~~~~~~~~--------------~~~~~~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw 568 (615)
T 1pgu_A 503 IAAGDVMGKILLYDLQSREVK--------------TSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIY 568 (615)
T ss_dssp EEEEETTSCEEEEETTTTEEE--------------ECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEE
T ss_pred EEEcCCCCeEEEeeCCCCcce--------------eEeecCCCCceeEEEEcCccccccccccCCCEEEEEcCCCcEEEE
Confidence 445567899999975322111 111111234566776643 334444578999999
Q ss_pred eCCC
Q 017198 342 GDNE 345 (375)
Q Consensus 342 G~n~ 345 (375)
-...
T Consensus 569 ~~~~ 572 (615)
T 1pgu_A 569 SVKR 572 (615)
T ss_dssp ESSC
T ss_pred ECCC
Confidence 6654
No 48
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=87.36 E-value=14 Score=32.10 Aligned_cols=240 Identities=12% Similarity=-0.003 Sum_probs=119.1
Q ss_pred CEEEEecCC--ceEEEEEcCCcEEEeeCCCCCcccCCCCCCceecCEEccccCCcCeEEEEcc----CCeEEEEEcCCCE
Q 017198 51 HVVQVSASE--NHAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAG----LNFTGFLTIRGHV 124 (375)
Q Consensus 51 ~i~~i~~g~--~~~~~lt~~g~vy~~G~n~~gqlg~~~~~~~~~~p~~i~~~~~~~i~~v~~g----~~~~~~lt~~g~v 124 (375)
.|..++... ...+.-..||.|+.|-.... .......+. .....|..++.. ....+....||.|
T Consensus 13 ~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~----------~~~~~~~~~-~h~~~v~~~~~~~~~~~~~l~s~~~dg~v 81 (379)
T 3jrp_A 13 LIHDAVLDYYGKRLATCSSDKTIKIFEVEGE----------THKLIDTLT-GHEGPVWRVDWAHPKFGTILASCSYDGKV 81 (379)
T ss_dssp CEEEEEECSSSSEEEEEETTSCEEEEEEETT----------EEEEEEEEC-CCSSCEEEEEECCGGGCSEEEEEETTSCE
T ss_pred cEEEEEEcCCCCEEEEEECCCcEEEEecCCC----------cceeeeEec-CCCCcEEEEEeCCCCCCCEEEEeccCCEE
Confidence 566666543 33444446888888854320 001111111 123356667653 4566667788999
Q ss_pred EEEeCCCCCcccCCCCCCCCcceeecCC-CCCCCEEEEEeCCC----eEEEEECCCcEEEEeCCCCCccCCCCCCCccCc
Q 017198 125 HTCGSNTHGQLGHGDTLDRPTPKSIAPL-EEVGSVVQIAAGPS----YMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQP 199 (375)
Q Consensus 125 ~~~G~n~~g~lg~~~~~~~~~p~~~~~~-~~~~~i~~i~~g~~----~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~p 199 (375)
..|-.... .+..+..+ .....|..++.... ..+....+|.|..|-...... ..+
T Consensus 82 ~iwd~~~~------------~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~---------~~~ 140 (379)
T 3jrp_A 82 LIWKEENG------------RWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGT---------TSP 140 (379)
T ss_dssp EEEEEETT------------EEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSC---------CCE
T ss_pred EEEEcCCC------------ceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCc---------eee
Confidence 99943321 00111111 11256777777643 566667899999996543211 111
Q ss_pred eeeeccccCCccEEEEEcCC---------------CeEEEEeCCCCEEEEeCCCCCCCCCCCCCCcccCeeccCCCCCce
Q 017198 200 RAIQTFRRKGIHVVRVSAGD---------------EHVVALDSSGYVYTWGKGYCGALGHGDEIDKTLPEPLSSLKSHLA 264 (375)
Q Consensus 200 ~~i~~~~~~~~~i~~i~~g~---------------~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~p~~i~~~~~~~i 264 (375)
..+ ......|..++... ...++-..+|.|+.|-..... ....+..........|
T Consensus 141 ~~~---~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~--------~~~~~~~~~~~h~~~v 209 (379)
T 3jrp_A 141 III---DAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDA--------QTYVLESTLEGHSDWV 209 (379)
T ss_dssp EEE---ECCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTT--------TEEEEEEEECCCSSCE
T ss_pred EEe---cCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCC--------cceeeEEEEecccCcE
Confidence 111 11222466665543 445556788999999542110 0001111111123456
Q ss_pred EEEEecCC-----cEEEEEcCCcEEEEeCCCCCCCCCCCCCCCCceecceEcCc-cCCCcEEEEEeCCC--ceEEEEcCC
Q 017198 265 VQVCARKR-----KTFVLVDTGSVYGFGWMGFGSLGFPDRGVSDKVLRPRILDS-LRAHHVSQISTGLY--HTVVVTDRG 336 (375)
Q Consensus 265 ~~i~~g~~-----~~~~l~~~g~vy~~G~n~~gqlg~~~~~~~~~~~~p~~~~~-~~~~~i~~i~~G~~--h~~~l~~~g 336 (375)
..++...+ ..+....+|.|..|-...... ......+.. -....|..++.... ..++-..+|
T Consensus 210 ~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~-----------~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg 278 (379)
T 3jrp_A 210 RDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQG-----------PWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDN 278 (379)
T ss_dssp EEEEECCCCSSSEEEEEEETTSCEEEEEESSTTS-----------CCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSS
T ss_pred eEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCCc-----------cceeeeeccccCCCcEEEEEEcCCCCEEEEecCCC
Confidence 77765543 344456789999997432110 000111111 12235666665433 344446789
Q ss_pred CEEEeeCC
Q 017198 337 RLFGFGDN 344 (375)
Q Consensus 337 ~v~~wG~n 344 (375)
.|+.|=.+
T Consensus 279 ~i~iw~~~ 286 (379)
T 3jrp_A 279 KVTLWKEN 286 (379)
T ss_dssp SEEEEEEE
T ss_pred cEEEEeCC
Confidence 99998543
No 49
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=87.32 E-value=14 Score=31.95 Aligned_cols=149 Identities=9% Similarity=-0.023 Sum_probs=79.9
Q ss_pred CEEEEecC--CceEEEEEcCCcEEEeeCCCCCcccCCCCCCceecCEEccccCCcCeEEEEc--cC--CeEEEEEcCCCE
Q 017198 51 HVVQVSAS--ENHAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTA--GL--NFTGFLTIRGHV 124 (375)
Q Consensus 51 ~i~~i~~g--~~~~~~lt~~g~vy~~G~n~~gqlg~~~~~~~~~~p~~i~~~~~~~i~~v~~--g~--~~~~~lt~~g~v 124 (375)
.|..++.. ....+.-..||.|..|-..... +..+.. ....|..+.. .. ...+....||.|
T Consensus 88 ~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~-------------~~~~~~-~~~~v~~~~~~~~~~~~~l~~~~~dg~i 153 (368)
T 3mmy_A 88 PVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQ-------------AIQIAQ-HDAPVKTIHWIKAPNYSCVMTGSWDKTL 153 (368)
T ss_dssp CEEEEEECTTSSEEEEEETTSEEEEEETTTTE-------------EEEEEE-CSSCEEEEEEEECSSCEEEEEEETTSEE
T ss_pred CEEEEEECcCCCEEEEEcCCCcEEEEEcCCCC-------------ceeecc-ccCceEEEEEEeCCCCCEEEEccCCCcE
Confidence 67666654 4456666778999999655411 111111 2335666654 22 234555678999
Q ss_pred EEEeCCCCCcccCCCCCCCCcceeecCCCCCCCEEEEEeCCCeEEEEECCCcEEEEeCCCCCccCCCCCCCccCceeeec
Q 017198 125 HTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGPSYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQT 204 (375)
Q Consensus 125 ~~~G~n~~g~lg~~~~~~~~~p~~~~~~~~~~~i~~i~~g~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~p~~i~~ 204 (375)
+.|=.... .+ +..+.....+..+..-....++.+.++.+..|-...... ....+..
T Consensus 154 ~vwd~~~~------------~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~----------~~~~~~~ 209 (368)
T 3mmy_A 154 KFWDTRSS------------NP--MMVLQLPERCYCADVIYPMAVVATAERGLIVYQLENQPS----------EFRRIES 209 (368)
T ss_dssp EEECSSCS------------SC--SEEEECSSCEEEEEEETTEEEEEEGGGCEEEEECSSSCE----------EEEECCC
T ss_pred EEEECCCC------------cE--EEEEecCCCceEEEecCCeeEEEeCCCcEEEEEeccccc----------hhhhccc
Confidence 99943211 11 111111246777777777888888999999996633211 1111111
Q ss_pred cccCCccEEEEEcCCCe----EEEEeCCCCEEEEeCC
Q 017198 205 FRRKGIHVVRVSAGDEH----VVALDSSGYVYTWGKG 237 (375)
Q Consensus 205 ~~~~~~~i~~i~~g~~~----~~~lt~~g~v~~~G~n 237 (375)
.......+..+...... .++-..+|.|..|-..
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~ 246 (368)
T 3mmy_A 210 PLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYIN 246 (368)
T ss_dssp SCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESS
T ss_pred cccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecC
Confidence 11122234444433332 5566789989888653
No 50
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=87.27 E-value=15 Score=32.31 Aligned_cols=186 Identities=11% Similarity=-0.039 Sum_probs=92.0
Q ss_pred CeEEEEcc--CCeEEEEEcCCCEEEEeCCCCCcccCCCCCCCCcceeecCCC-CCCCEEEEEeCC---CeEEEEECCCcE
Q 017198 104 PCKQVTAG--LNFTGFLTIRGHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLE-EVGSVVQIAAGP---SYMLAVTGNGVV 177 (375)
Q Consensus 104 ~i~~v~~g--~~~~~~lt~~g~v~~~G~n~~g~lg~~~~~~~~~p~~~~~~~-~~~~i~~i~~g~---~~~~~lt~~g~v 177 (375)
.|..++.. ....+.-..+|.|..|-.... ..+..+. ....|..++... ...+....+|.|
T Consensus 141 ~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~--------------~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v 206 (357)
T 4g56_B 141 IVKTLSVFSDGTQAVSGGKDFSVKVWDLSQK--------------AVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRI 206 (357)
T ss_dssp CEEEEEECSSSSEEEEEETTSCEEEEETTTT--------------EEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCE
T ss_pred CEEEEEECCCCCEEEEEeCCCeEEEEECCCC--------------cEEEEEcCCCCCEEEEEEccCCCceeeeeccCCce
Confidence 45555543 334455567888888843321 1111111 125677777642 345556788999
Q ss_pred EEEeCCCCCccCCCCCCCccCceeeeccccCCccEEEEEcCC--CeEE-EEeCCCCEEEEeCCCCCCCCCCCCCCcccCe
Q 017198 178 YSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGD--EHVV-ALDSSGYVYTWGKGYCGALGHGDEIDKTLPE 254 (375)
Q Consensus 178 ~~~G~n~~gqlg~~~~~~~~~p~~i~~~~~~~~~i~~i~~g~--~~~~-~lt~~g~v~~~G~n~~gqlg~~~~~~~~~p~ 254 (375)
..|-..... +.....+......+..++... ...+ .-+.++.|+.|-.... ....
T Consensus 207 ~~wd~~~~~------------~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~-----------~~~~ 263 (357)
T 4g56_B 207 LLWDTRKPK------------PATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNP-----------DSAQ 263 (357)
T ss_dssp EECCTTSSS------------CBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCG-----------GGCE
T ss_pred EEEECCCCc------------eeeeeeeccccccccchhhhhcccceEEEeecccceeEEECCCC-----------cEeE
Confidence 998542211 111111111222466665532 2333 3468888999854210 1111
Q ss_pred eccCCCCCceEEEEecC---CcEEEEEcCCcEEEEeCCCCCCCCCCCCCCCCceecceEcCccCCCcEEEEEeCC-CceE
Q 017198 255 PLSSLKSHLAVQVCARK---RKTFVLVDTGSVYGFGWMGFGSLGFPDRGVSDKVLRPRILDSLRAHHVSQISTGL-YHTV 330 (375)
Q Consensus 255 ~i~~~~~~~i~~i~~g~---~~~~~l~~~g~vy~~G~n~~gqlg~~~~~~~~~~~~p~~~~~~~~~~i~~i~~G~-~h~~ 330 (375)
.+ ......|..++... ...+.-..||.|+.|-... ++ ...... ....|..++... ...+
T Consensus 264 ~~-~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~-~~--------------~~~~~~-H~~~V~~vafsP~d~~~ 326 (357)
T 4g56_B 264 TS-AVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADF-SE--------------VFRDLS-HRDFVTGVAWSPLDHSK 326 (357)
T ss_dssp EE-CCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTS-CE--------------EEEECC-CSSCEEEEEECSSSTTE
T ss_pred EE-eccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCC-Cc--------------EeEECC-CCCCEEEEEEeCCCCCE
Confidence 11 12233567776542 2333456789999995321 00 111111 123677777642 2222
Q ss_pred --EEEcCCCEEEeeC
Q 017198 331 --VVTDRGRLFGFGD 343 (375)
Q Consensus 331 --~l~~~g~v~~wG~ 343 (375)
.-..||+|..|=-
T Consensus 327 l~s~s~Dg~v~iW~~ 341 (357)
T 4g56_B 327 FTTVGWDHKVLHHHL 341 (357)
T ss_dssp EEEEETTSCEEEEEC
T ss_pred EEEEcCCCeEEEEEC
Confidence 3357899999954
No 51
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=86.82 E-value=18 Score=32.81 Aligned_cols=200 Identities=7% Similarity=-0.022 Sum_probs=106.9
Q ss_pred CEEEEecC----CceEEEEEcCCcEEEeeCCCCCcccCCCCCC--------ceecC--EEccccCCcCeEEEEccCCeEE
Q 017198 51 HVVQVSAS----ENHAAFVLQSGQVFTCGDNSSFCCGHRDTNR--------PIFRP--RLVEALKGVPCKQVTAGLNFTG 116 (375)
Q Consensus 51 ~i~~i~~g----~~~~~~lt~~g~vy~~G~n~~gqlg~~~~~~--------~~~~p--~~i~~~~~~~i~~v~~g~~~~~ 116 (375)
.|..++.. ....+.-..||.|..|-.............. ....+ ..........|..++......+
T Consensus 205 ~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~ 284 (464)
T 3v7d_B 205 TVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVV 284 (464)
T ss_dssp CEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEEEEETTEEE
T ss_pred ccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEEcCCCCEEE
Confidence 56555542 3556667788999999765532221110000 00000 1111112335667776677777
Q ss_pred EEEcCCCEEEEeCCCCCcccCCCCCCCCcceeecCCCCCCCEEEEEeCC--CeEEEEECCCcEEEEeCCCCCccCCCCCC
Q 017198 117 FLTIRGHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGP--SYMLAVTGNGVVYSFGSGSNFCLGHGEQH 194 (375)
Q Consensus 117 ~lt~~g~v~~~G~n~~g~lg~~~~~~~~~p~~~~~~~~~~~i~~i~~g~--~~~~~lt~~g~v~~~G~n~~gqlg~~~~~ 194 (375)
.-..+|.|..|-......+ ..+.. ....|..++... ...+.-..+|.|+.|-...
T Consensus 285 ~~~~d~~i~vwd~~~~~~~-----------~~~~~--~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~---------- 341 (464)
T 3v7d_B 285 SGSYDNTLIVWDVAQMKCL-----------YILSG--HTDRIYSTIYDHERKRCISASMDTTIRIWDLEN---------- 341 (464)
T ss_dssp EEETTSCEEEEETTTTEEE-----------EEECC--CSSCEEEEEEETTTTEEEEEETTSCEEEEETTT----------
T ss_pred EEeCCCeEEEEECCCCcEE-----------EEecC--CCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCC----------
Confidence 7888999999954321111 11111 114677776653 4566667889999996532
Q ss_pred CccCceeeeccccCCccEEEEEcCCCeEEEEeCCCCEEEEeCCCCCCCCCCCCCCcccCeeccCCCCCceEEEEecCCcE
Q 017198 195 DELQPRAIQTFRRKGIHVVRVSAGDEHVVALDSSGYVYTWGKGYCGALGHGDEIDKTLPEPLSSLKSHLAVQVCARKRKT 274 (375)
Q Consensus 195 ~~~~p~~i~~~~~~~~~i~~i~~g~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~p~~i~~~~~~~i~~i~~g~~~~ 274 (375)
...+..+......|..++....+.+....||.|..|-.....+ ...........+..+.. +...
T Consensus 342 ----~~~~~~~~~h~~~v~~~~~~~~~l~s~s~dg~v~vwd~~~~~~-----------~~~~~~~~~~~~~~~~~-~~~~ 405 (464)
T 3v7d_B 342 ----GELMYTLQGHTALVGLLRLSDKFLVSAAADGSIRGWDANDYSR-----------KFSYHHTNLSAITTFYV-SDNI 405 (464)
T ss_dssp ----TEEEEEECCCSSCEEEEEECSSEEEEEETTSEEEEEETTTCCE-----------EEEEECTTCCCEEEEEE-CSSE
T ss_pred ----CcEEEEEeCCCCcEEEEEEcCCEEEEEeCCCcEEEEECCCCce-----------eeeecCCCCccEEEEEe-CCCE
Confidence 1222233333446777877777777888999999997543111 11111112223444444 3345
Q ss_pred EEEEcCCcEEEEeCC
Q 017198 275 FVLVDTGSVYGFGWM 289 (375)
Q Consensus 275 ~~l~~~g~vy~~G~n 289 (375)
++...+|.|+.|-..
T Consensus 406 l~~~~dg~i~iwd~~ 420 (464)
T 3v7d_B 406 LVSGSENQFNIYNLR 420 (464)
T ss_dssp EEEEETTEEEEEETT
T ss_pred EEEecCCeEEEEECC
Confidence 555568899998743
No 52
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=86.76 E-value=16 Score=32.12 Aligned_cols=188 Identities=11% Similarity=-0.018 Sum_probs=93.9
Q ss_pred CEEEEecCCc--eEEEEEcCCcEEEeeCCCCCcccCCCCCCceecCEEccccCCcCeEEEEcc---CCeEEEEEcCCCEE
Q 017198 51 HVVQVSASEN--HAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAG---LNFTGFLTIRGHVH 125 (375)
Q Consensus 51 ~i~~i~~g~~--~~~~lt~~g~vy~~G~n~~gqlg~~~~~~~~~~p~~i~~~~~~~i~~v~~g---~~~~~~lt~~g~v~ 125 (375)
.|..|+.... ..+.-..||.|..|-....- ....+.. ....|..|+.. ....+....||.|.
T Consensus 141 ~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~------------~~~~~~~-h~~~v~~v~~s~~~~~~~~s~~~dg~v~ 207 (357)
T 4g56_B 141 IVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKA------------VLKSYNA-HSSEVNCVAACPGKDTIFLSCGEDGRIL 207 (357)
T ss_dssp CEEEEEECSSSSEEEEEETTSCEEEEETTTTE------------EEEEECC-CSSCEEEEEECTTCSSCEEEEETTSCEE
T ss_pred CEEEEEECCCCCEEEEEeCCCeEEEEECCCCc------------EEEEEcC-CCCCEEEEEEccCCCceeeeeccCCceE
Confidence 6766665543 34444578888888544310 0111111 12346666542 23455667789999
Q ss_pred EEeCCCCCcccCCCCCCCCcceeecCCCCCCCEEEEEeCC---CeEEEEECCCcEEEEeCCCCCccCCCCCCCccCceee
Q 017198 126 TCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGP---SYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAI 202 (375)
Q Consensus 126 ~~G~n~~g~lg~~~~~~~~~p~~~~~~~~~~~i~~i~~g~---~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~p~~i 202 (375)
.|=...... ...+........+..++... ...+.-..++.|..|-... +..+
T Consensus 208 ~wd~~~~~~-----------~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~--------------~~~~ 262 (357)
T 4g56_B 208 LWDTRKPKP-----------ATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKN--------------PDSA 262 (357)
T ss_dssp ECCTTSSSC-----------BCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSC--------------GGGC
T ss_pred EEECCCCce-----------eeeeeeccccccccchhhhhcccceEEEeecccceeEEECCC--------------CcEe
Confidence 983221110 01111111124577777642 2333346789999995422 1112
Q ss_pred eccccCCccEEEEEcCC---CeEEEEeCCCCEEEEeCCCCCCCCCCCCCCcccCeeccCCCCCceEEEEec--CCcEE-E
Q 017198 203 QTFRRKGIHVVRVSAGD---EHVVALDSSGYVYTWGKGYCGALGHGDEIDKTLPEPLSSLKSHLAVQVCAR--KRKTF-V 276 (375)
Q Consensus 203 ~~~~~~~~~i~~i~~g~---~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~p~~i~~~~~~~i~~i~~g--~~~~~-~ 276 (375)
..+......|..++... ...+.-..||.|+.|-... +++ ...+ -....|..|+.. +...+ .
T Consensus 263 ~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~-~~~----------~~~~--~H~~~V~~vafsP~d~~~l~s 329 (357)
T 4g56_B 263 QTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADF-SEV----------FRDL--SHRDFVTGVAWSPLDHSKFTT 329 (357)
T ss_dssp EEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTS-CEE----------EEEC--CCSSCEEEEEECSSSTTEEEE
T ss_pred EEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCC-CcE----------eEEC--CCCCCEEEEEEeCCCCCEEEE
Confidence 22222333577776543 2333456889999995321 111 0111 123357777754 22333 3
Q ss_pred EEcCCcEEEEeCC
Q 017198 277 LVDTGSVYGFGWM 289 (375)
Q Consensus 277 l~~~g~vy~~G~n 289 (375)
-..||.|+.|--.
T Consensus 330 ~s~Dg~v~iW~~~ 342 (357)
T 4g56_B 330 VGWDHKVLHHHLP 342 (357)
T ss_dssp EETTSCEEEEECC
T ss_pred EcCCCeEEEEECC
Confidence 4578999999743
No 53
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=86.62 E-value=14 Score=31.55 Aligned_cols=204 Identities=7% Similarity=-0.062 Sum_probs=102.3
Q ss_pred CEEEEecC--Cc-eEEEEEcCCcEEEeeC-CCCCcccCCCCCCceecCEEccc-cCCcCeEEEEcc-CCeEEEEEcCCCE
Q 017198 51 HVVQVSAS--EN-HAAFVLQSGQVFTCGD-NSSFCCGHRDTNRPIFRPRLVEA-LKGVPCKQVTAG-LNFTGFLTIRGHV 124 (375)
Q Consensus 51 ~i~~i~~g--~~-~~~~lt~~g~vy~~G~-n~~gqlg~~~~~~~~~~p~~i~~-~~~~~i~~v~~g-~~~~~~lt~~g~v 124 (375)
.|..++.. .. ..+.-..||.|+.|-. .. ++ ...+.. .....|..++.. ....+....+|.|
T Consensus 58 ~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~-~~------------~~~~~~~~~~~~v~~l~~~~~~~l~s~~~d~~i 124 (342)
T 1yfq_A 58 PLLCCNFIDNTDLQIYVGTVQGEILKVDLIGS-PS------------FQALTNNEANLGICRICKYGDDKLIAASWDGLI 124 (342)
T ss_dssp CEEEEEEEESSSEEEEEEETTSCEEEECSSSS-SS------------EEECBSCCCCSCEEEEEEETTTEEEEEETTSEE
T ss_pred ceEEEEECCCCCcEEEEEcCCCeEEEEEeccC-Cc------------eEeccccCCCCceEEEEeCCCCEEEEEcCCCeE
Confidence 56665543 44 5666677899999955 32 11 122221 022345555443 5566667888999
Q ss_pred EEEeCCCCCcccCCCCCCCCcceeecCCCCCCCEEEEEeCCCeEEEEECCCcEEEEeCCCCCccCCCCCCCccCceeeec
Q 017198 125 HTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGPSYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQT 204 (375)
Q Consensus 125 ~~~G~n~~g~lg~~~~~~~~~p~~~~~~~~~~~i~~i~~g~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~p~~i~~ 204 (375)
+.|-...... .. .......+..+.....|..++...+..++.+.++.|+.|-....+. ........
T Consensus 125 ~iwd~~~~~~---~~--~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~i~d~~~~~~---------~~~~~~~~ 190 (342)
T 1yfq_A 125 EVIDPRNYGD---GV--IAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCED---------DNGTIEES 190 (342)
T ss_dssp EEECHHHHTT---BC--EEEEESCSSSSSSCCCEEEEEECSSEEEEEESTTEEEEEESSCCTT---------CCCEEEEC
T ss_pred EEEccccccc---cc--ccccCCeeeEEeeCCceEEEEecCCcEEEEeCCCeEEEEECCcccc---------ccceeeec
Confidence 9994321000 00 0000111111222267888888888877778899999997643110 01111111
Q ss_pred cccCCccEEEEEcCC---CeEEEEeCCCCEEEEeCCCCCCCCCCCCCCcccCeeccCC--------CCCceEEEEec--C
Q 017198 205 FRRKGIHVVRVSAGD---EHVVALDSSGYVYTWGKGYCGALGHGDEIDKTLPEPLSSL--------KSHLAVQVCAR--K 271 (375)
Q Consensus 205 ~~~~~~~i~~i~~g~---~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~p~~i~~~--------~~~~i~~i~~g--~ 271 (375)
.....|..++... ...++-..+|.+..|-....+. .........+... ....|..++.. .
T Consensus 191 --~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~ 263 (342)
T 1yfq_A 191 --GLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGD-----DYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRH 263 (342)
T ss_dssp --SCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCC-----STTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTT
T ss_pred --CCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCc-----ccccccceeeecccccccccccceeEEEEEEcCCC
Confidence 1122466665543 4455557888888886533210 0000000111110 01256666553 3
Q ss_pred CcEEEEEcCCcEEEEeC
Q 017198 272 RKTFVLVDTGSVYGFGW 288 (375)
Q Consensus 272 ~~~~~l~~~g~vy~~G~ 288 (375)
...+.-..+|.|+.|-.
T Consensus 264 ~~l~~~~~dg~i~vwd~ 280 (342)
T 1yfq_A 264 KFLYTAGSDGIISCWNL 280 (342)
T ss_dssp CCEEEEETTSCEEEEET
T ss_pred CEEEEecCCceEEEEcC
Confidence 34455567889999864
No 54
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=86.11 E-value=8.8 Score=32.97 Aligned_cols=17 Identities=29% Similarity=0.380 Sum_probs=11.7
Q ss_pred CeEEEEECCCcEEEEeCC
Q 017198 166 SYMLAVTGNGVVYSFGSG 183 (375)
Q Consensus 166 ~~~~~lt~~g~v~~~G~n 183 (375)
.|++++. +++||++|-.
T Consensus 161 ~~~~~~~-~~~iyv~GG~ 177 (308)
T 1zgk_A 161 GVGVAVL-NRLLYAVGGF 177 (308)
T ss_dssp SCEEEEE-TTEEEEECCB
T ss_pred ceEEEEE-CCEEEEEeCC
Confidence 4555554 7899999853
No 55
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=85.52 E-value=18 Score=31.68 Aligned_cols=215 Identities=11% Similarity=0.073 Sum_probs=113.5
Q ss_pred EEEccCCeEEEEEcCCCEEEEeCCCCCcccCCCCCCCCcce-eecCCCCCCCEEEEEeCC-----CeEEEEECCCcEEEE
Q 017198 107 QVTAGLNFTGFLTIRGHVHTCGSNTHGQLGHGDTLDRPTPK-SIAPLEEVGSVVQIAAGP-----SYMLAVTGNGVVYSF 180 (375)
Q Consensus 107 ~v~~g~~~~~~lt~~g~v~~~G~n~~g~lg~~~~~~~~~p~-~~~~~~~~~~i~~i~~g~-----~~~~~lt~~g~v~~~ 180 (375)
..+....+.+++|+.|++|..-....-..+. ...-.|. .+-.+...++|+.+.+.. .+.+.+|++|.+.-.
T Consensus 48 ~~~~t~d~ll~fT~~Gr~y~~~~~~lp~~~r---~~~G~~i~~~l~l~~~e~i~~~~~~~~~~~e~~~v~~T~~G~iKr~ 124 (327)
T 3uc1_A 48 FVCSTHDLILFFTTQGRVYRAKAYDLPEASR---TARGQHVANLLAFQPEERIAQVIQIRGYTDAPYLVLATRNGLVKKS 124 (327)
T ss_dssp EEEETTSEEEEEETTSEEEEEEGGGSCBCCS---SSCCEEHHHHTTCCTTCCEEEEEEESSTTSSSEEEEEETTSEEEEE
T ss_pred EEeCCCCEEEEEeCCCeEEEEEHHHCcCCCc---cCCCEEHHHccCCCCCCEEEEEEEeccCCCCCEEEEEcCCCEEEEe
Confidence 3455777788999999999886443222111 1111121 112244457888887664 478889999988877
Q ss_pred eCCCCCccCCCCCCCccCceeeeccccCCccEE--EEEcCCCeEEEEeCCCCEEEEeCC--CCCCCCCCCCCCcccCeec
Q 017198 181 GSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVV--RVSAGDEHVVALDSSGYVYTWGKG--YCGALGHGDEIDKTLPEPL 256 (375)
Q Consensus 181 G~n~~gqlg~~~~~~~~~p~~i~~~~~~~~~i~--~i~~g~~~~~~lt~~g~v~~~G~n--~~gqlg~~~~~~~~~p~~i 256 (375)
-...+... .. .......+.+.. .++ .+.....+.+++|++|+++.+-.. .--.+|...... ..+
T Consensus 125 ~l~~~~~~------~r-~G~~~i~lke~D-~lv~~~~~~~~d~ill~T~~G~~~rf~~~~~eip~~gr~a~Gv----~~i 192 (327)
T 3uc1_A 125 KLTDFDSN------RS-GGIVAVNLRDND-ELVGAVLCSAGDDLLLVSANGQSIRFSATDEALRPMGRATSGV----QGM 192 (327)
T ss_dssp EGGGGCCC------CS-SCEESCBCCTTC-CEEEEEEECTTCEEEEEETTSEEEEEECCTTTSCCCCTTSBCE----ESS
T ss_pred EHHHhhcc------cc-CceEEEEECCCC-EEEEEEEecCCCEEEEEECCCeEEEEECcccccCcCCcCCCCe----eee
Confidence 54433210 00 111111122111 233 233466788899999999998765 333333322221 123
Q ss_pred cCCCCCceEEEEecC--CcEEEEEcCCcEEEEeCCCCCCCCCCCCCCCCceecceEcCccC-CCcEEEEE--eCCCceEE
Q 017198 257 SSLKSHLAVQVCARK--RKTFVLVDTGSVYGFGWMGFGSLGFPDRGVSDKVLRPRILDSLR-AHHVSQIS--TGLYHTVV 331 (375)
Q Consensus 257 ~~~~~~~i~~i~~g~--~~~~~l~~~g~vy~~G~n~~gqlg~~~~~~~~~~~~p~~~~~~~-~~~i~~i~--~G~~h~~~ 331 (375)
....+..|+.+..-. .+.++++++|.+-..--..+-..+.+... -..+.... +..++.+. .+....++
T Consensus 193 ~L~~~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~R~~~G-------~~~~~l~~~~d~lv~~~~~~~~~~i~l 265 (327)
T 3uc1_A 193 RFNIDDRLLSLNVVREGTYLLVATSGGYAKRTAIEEYPVQGRGGKG-------VLTVMYDRRRGRLVGALIVDDDSELYA 265 (327)
T ss_dssp CCCTTCCEEEEEECCTTCEEEEEETTSEEEEEEGGGSCBCCTTSCC-------EESSCCCTTTCSEEEEEEECTTCEEEE
T ss_pred cCCCCCEEEEEEEECCCCEEEEEeCCCcEEEEEHHHccccCcCCCc-------EEEEEecCCCCeEEEEEEeCCCccEEE
Confidence 334456677765543 35677788886665433322221111000 00011111 22344433 35678899
Q ss_pred EEcCCCEEEeeC
Q 017198 332 VTDRGRLFGFGD 343 (375)
Q Consensus 332 l~~~g~v~~wG~ 343 (375)
++++|++..+-.
T Consensus 266 ~T~~G~~ir~~~ 277 (327)
T 3uc1_A 266 VTSGGGVIRTAA 277 (327)
T ss_dssp EEGGGCEEEEEG
T ss_pred EcCCCeEEEEeh
Confidence 999999887743
No 56
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=85.29 E-value=14 Score=31.40 Aligned_cols=17 Identities=18% Similarity=0.247 Sum_probs=12.5
Q ss_pred CeeEEEeCCcEEEEeCC
Q 017198 8 YHTLLISNSSVFSCGSS 24 (375)
Q Consensus 8 ~~~~~l~~g~l~~wG~n 24 (375)
.|+++..+++||++|-.
T Consensus 54 ~~~~~~~~~~lyv~GG~ 70 (302)
T 2xn4_A 54 RAGMVYMAGLVFAVGGF 70 (302)
T ss_dssp SCEEEEETTEEEEESCB
T ss_pred cceEEEECCEEEEEeCc
Confidence 45554588999999954
No 57
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=85.20 E-value=19 Score=31.75 Aligned_cols=119 Identities=9% Similarity=0.066 Sum_probs=56.0
Q ss_pred CeEEEEcc--CCeEEEEEcCCCEEEEeCCCCCcccCCCCCCCCcceeecCCCCCCCEEEEEeC---CCeEEEEECCCcEE
Q 017198 104 PCKQVTAG--LNFTGFLTIRGHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAG---PSYMLAVTGNGVVY 178 (375)
Q Consensus 104 ~i~~v~~g--~~~~~~lt~~g~v~~~G~n~~g~lg~~~~~~~~~p~~~~~~~~~~~i~~i~~g---~~~~~~lt~~g~v~ 178 (375)
.|..++.. ....+.-..+|.|..|-...... .......+.. ....|..++.. ....+.-..+|.|+
T Consensus 69 ~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~-------~~~~~~~~~~--h~~~v~~~~~~~~~~~~l~s~~~dg~v~ 139 (416)
T 2pm9_A 69 KFNDLDWSHNNKIIAGALDNGSLELYSTNEANN-------AINSMARFSN--HSSSVKTVKFNAKQDNVLASGGNNGEIF 139 (416)
T ss_dssp CEEEEEECSSSSCEEEEESSSCEEEECCSSTTS-------CCCEEEECCC--SSSCCCEEEECSSSTTBEEEECSSSCEE
T ss_pred ceEEEEECCCCCeEEEEccCCeEEEeecccccc-------cccchhhccC--CccceEEEEEcCCCCCEEEEEcCCCeEE
Confidence 45555543 33444556789999994432100 0001111111 11456666654 34555566789999
Q ss_pred EEeCCCCCccCCCCCCCccCceeeeccccCCccEEEEEcCC---CeEEEEeCCCCEEEEeC
Q 017198 179 SFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGD---EHVVALDSSGYVYTWGK 236 (375)
Q Consensus 179 ~~G~n~~gqlg~~~~~~~~~p~~i~~~~~~~~~i~~i~~g~---~~~~~lt~~g~v~~~G~ 236 (375)
.|-....... .....+..+.........|..++... ...+.-..+|.|..|-.
T Consensus 140 iwd~~~~~~~-----~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~ 195 (416)
T 2pm9_A 140 IWDMNKCTES-----PSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDL 195 (416)
T ss_dssp BCBTTTTSSC-----TTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEET
T ss_pred EEECCCCccc-----cccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEEC
Confidence 9965432200 00001111111111222455555443 23444468888999964
No 58
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=85.15 E-value=19 Score=31.52 Aligned_cols=226 Identities=12% Similarity=0.055 Sum_probs=118.3
Q ss_pred EecCCceEEEEEcCCcEEEeeCCCCCcccCCCCCCceecCEEccccCCcCeEEEEcc-----CCeEEEEEcCCCEEEEeC
Q 017198 55 VSASENHAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAG-----LNFTGFLTIRGHVHTCGS 129 (375)
Q Consensus 55 i~~g~~~~~~lt~~g~vy~~G~n~~gqlg~~~~~~~~~~p~~i~~~~~~~i~~v~~g-----~~~~~~lt~~g~v~~~G~ 129 (375)
++...++.+++|+.|++|.+-..+--..+..... ......+...++.+|+.+..- ..+.+++|++|.+--.-.
T Consensus 46 ~~~t~d~ll~fT~~Gr~~~~~~~elp~~~r~a~G--~~i~~~i~L~~~e~Iv~~~~~~~~~~~~~ll~~T~~G~iKrt~l 123 (323)
T 1wp5_A 46 EMNTKDVLLLFTNKGNYLYCPVHELPDIRWKDLG--QHIANIIPIDRDEEIIKAIPINDFELNGYFLFVTRNGMVKKTEL 123 (323)
T ss_dssp EEETTSEEEEEETTSEEEEEEGGGSCBCCTTSCC--EEGGGTSCCCTTCCEEEEEEESCTTSSCEEEEEETTSEEEEEEG
T ss_pred EECCCCEEEEEECCCEEEEEEHHHCcCCCCCCCC--cChhhccCCCCCCEEEEEEEecccCCCceEEEEeCCCeEEEeEH
Confidence 5557889999999999999876553222211111 111122333345667765443 235788999998887754
Q ss_pred CCCCcccCCCCCCCCcceeecCCCCCCCEEEEE--eCCCeEEEEECCCcEEEEeCCCCCccCCCCCCCccCceeeecccc
Q 017198 130 NTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIA--AGPSYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRR 207 (375)
Q Consensus 130 n~~g~lg~~~~~~~~~p~~~~~~~~~~~i~~i~--~g~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~p~~i~~~~~ 207 (375)
.++.... +........+.....++.+. .+.+..+++|++|+++.+-.+....+|.. ....+...+.
T Consensus 124 ~e~~~~~------r~~G~~ai~l~e~d~lv~~~~~~~~~~i~l~T~~G~~irf~~~ev~~~gR~-----a~GV~~i~L~- 191 (323)
T 1wp5_A 124 KHYKAQR------YSKPLTGINLKNDDQVVDVHLTDGMNELFLVTHNGYALWFDESEVSIVGVR-----AAGVKGMNLK- 191 (323)
T ss_dssp GGGCCSC------CSSCEECSCCCTTCCEEEEEEECSCSEEEEEETTSEEEEEEGGGSCBCCSS-----CCCEECCCCC-
T ss_pred HHhhhcc------ccCceEEEEeCCCCEEEEEEEeCCCCEEEEEeCCCcEEEEEHHHCcccCCC-----CcCEEEEEeC-
Confidence 4332111 01122222222225555443 35778999999999999987665444431 2223332232
Q ss_pred CCccEEEEEc--CCC-eEEEEeCCCCEEEEeCCCCCCCCCCCCCCcccCeeccCCCCCceEE--EEecCCcEEEEEcCCc
Q 017198 208 KGIHVVRVSA--GDE-HVVALDSSGYVYTWGKGYCGALGHGDEIDKTLPEPLSSLKSHLAVQ--VCARKRKTFVLVDTGS 282 (375)
Q Consensus 208 ~~~~i~~i~~--g~~-~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~p~~i~~~~~~~i~~--i~~g~~~~~~l~~~g~ 282 (375)
.+..|+.+.. ... ..+.++++|.....-...+-..+.+... ...+...+ -.+..+.. +..+.+..++++++|+
T Consensus 192 ~~d~Vv~~~~~~~~~~~ll~vt~~G~gKr~~~~e~~~~~Rg~kG-v~~~~~~~-~~~~~l~~~~~v~~~~~i~~it~~g~ 269 (323)
T 1wp5_A 192 EGDYIVSGQLITSKDESIVVATQRGAVKKMKLTEFEKATRAKRG-VVILRELK-ANPHRISGFVVAQDSDTIYLQTEKSF 269 (323)
T ss_dssp TTCCEEEEEEECCTTCEEEEEETTSEEEEEEGGGSCCCCTTSCC-EECSCCCS-SSCCCEEEEEEECTTCEEEEEETTSC
T ss_pred CCCEEEEEEEEcCCCcEEEEEECCCceEEEEHHHccccCCCCCC-EECeeecC-CCCceEEEEEEeCCCCeEEEEeCCCe
Confidence 2224555432 122 5667788876544433333222222211 11111111 11223442 2345677889999999
Q ss_pred EEEEeCCCCCCCCC
Q 017198 283 VYGFGWMGFGSLGF 296 (375)
Q Consensus 283 vy~~G~n~~gqlg~ 296 (375)
+...--++....+.
T Consensus 270 ~ir~~~~~i~~~~R 283 (323)
T 1wp5_A 270 IETIKVGDIRFSDR 283 (323)
T ss_dssp EEEEEGGGSCBCCS
T ss_pred EEEEEhhhcCccCc
Confidence 98876655544444
No 59
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=85.05 E-value=21 Score=32.00 Aligned_cols=139 Identities=12% Similarity=0.062 Sum_probs=72.3
Q ss_pred CCeeEEE-eCCcEEEEeCCCCCccCCCCCCCeeeeeeeecCCCC-CCEEEEecCC--ceEEEEEcCCcEEEeeCCCCCcc
Q 017198 7 RYHTLLI-SNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSA-AHVVQVSASE--NHAAFVLQSGQVFTCGDNSSFCC 82 (375)
Q Consensus 7 ~~~~~~l-~~g~l~~wG~n~~g~Lg~~~~~~~~~~~~~~~~~~~-~~i~~i~~g~--~~~~~lt~~g~vy~~G~n~~gql 82 (375)
....+++ -|+.||+|=... |+ ....+.+... ..|..|+... .+.+.-+.||.|..|-......
T Consensus 115 ~~n~lAvgld~tV~lWd~~t-g~-----------~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~- 181 (420)
T 4gga_A 115 SGNVLAVALDNSVYLWSASS-GD-----------ILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKR- 181 (420)
T ss_dssp TTSEEEEEETTEEEEEETTT-CC-----------EEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEE-
T ss_pred CCCEEEEEeCCEEEEEECCC-CC-----------EEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcE-
Confidence 3456778 899999996442 11 1223333332 2577777653 4455556789999996544111
Q ss_pred cCCCCCCceecCEEccccCCcCeEEEEccCCeEEEEEcCCCEEEEeCCCCCcccCCCCCCCCcceeecCCCCCCCEEEEE
Q 017198 83 GHRDTNRPIFRPRLVEALKGVPCKQVTAGLNFTGFLTIRGHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIA 162 (375)
Q Consensus 83 g~~~~~~~~~~p~~i~~~~~~~i~~v~~g~~~~~~lt~~g~v~~~G~n~~g~lg~~~~~~~~~p~~~~~~~~~~~i~~i~ 162 (375)
...+. .....+..++......+.-..++.++.|-...... ....+..-. ..+..+.
T Consensus 182 -----------~~~~~-~h~~~v~~~s~~~~~l~sgs~d~~i~~~d~~~~~~----------~~~~~~~h~--~~~~~~~ 237 (420)
T 4gga_A 182 -----------LRNMT-SHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEH----------HVATLSGHS--QEVCGLR 237 (420)
T ss_dssp -----------EEEEC-CCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSC----------EEEEEECCS--SCEEEEE
T ss_pred -----------EEEEe-CCCCceEEEeeCCCEEEEEeCCCceeEeeecccce----------eeEEecccc--cceeeee
Confidence 11111 11234566665555555566777777774321110 001111111 3344444
Q ss_pred eC--CCeEEEEECCCcEEEEeC
Q 017198 163 AG--PSYMLAVTGNGVVYSFGS 182 (375)
Q Consensus 163 ~g--~~~~~~lt~~g~v~~~G~ 182 (375)
.. ..+.+....++.+..|-.
T Consensus 238 ~~~~g~~l~s~~~D~~v~i~~~ 259 (420)
T 4gga_A 238 WAPDGRHLASGGNDNLVNVWPS 259 (420)
T ss_dssp ECTTSSEEEEEETTSCEEEEES
T ss_pred ecCCCCeeeeeeccccceEEee
Confidence 33 345555677888888865
No 60
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=84.18 E-value=24 Score=31.93 Aligned_cols=240 Identities=7% Similarity=0.043 Sum_probs=124.8
Q ss_pred CEEEEecCCc-eEEEEEcCCcEEEeeCCCCCcccCCCCCCceecCEEccccCCcCeEEEEcc----CCeEEEEEcCCCEE
Q 017198 51 HVVQVSASEN-HAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAG----LNFTGFLTIRGHVH 125 (375)
Q Consensus 51 ~i~~i~~g~~-~~~~lt~~g~vy~~G~n~~gqlg~~~~~~~~~~p~~i~~~~~~~i~~v~~g----~~~~~~lt~~g~v~ 125 (375)
.|..++.... ..+.-..||.|..|-..... ....+.. ....|..++.. ....+.-+.+|.|.
T Consensus 164 ~V~~l~~~~~~~l~s~s~dg~i~vwd~~~~~------------~~~~~~~-h~~~v~~l~~~~~~~~~~l~s~s~d~~i~ 230 (464)
T 3v7d_B 164 GVWALKYAHGGILVSGSTDRTVRVWDIKKGC------------CTHVFEG-HNSTVRCLDIVEYKNIKYIVTGSRDNTLH 230 (464)
T ss_dssp CEEEEEECSTTEEEEEETTSCEEEEETTTTE------------EEEEECC-CSSCEEEEEEEESSSCEEEEEEETTSCEE
T ss_pred CEEEEEEcCCCEEEEEeCCCCEEEEECCCCc------------EEEEECC-CCCccEEEEEecCCCCCEEEEEcCCCcEE
Confidence 6777775433 55666778999999654311 1111111 12245544432 24566678899999
Q ss_pred EEeCCCCCcccCCCCCCC---------CcceeecCC-CCCCCEEEEEeCCCeEEEEECCCcEEEEeCCCCCccCCCCCCC
Q 017198 126 TCGSNTHGQLGHGDTLDR---------PTPKSIAPL-EEVGSVVQIAAGPSYMLAVTGNGVVYSFGSGSNFCLGHGEQHD 195 (375)
Q Consensus 126 ~~G~n~~g~lg~~~~~~~---------~~p~~~~~~-~~~~~i~~i~~g~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~ 195 (375)
.|-............... ..+..+..+ .....+..++....+.+.-..+|.|..|-....
T Consensus 231 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~vwd~~~~---------- 300 (464)
T 3v7d_B 231 VWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQM---------- 300 (464)
T ss_dssp EEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEEEEETTEEEEEETTSCEEEEETTTT----------
T ss_pred EeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEEcCCCCEEEEEeCCCeEEEEECCCC----------
Confidence 996543322111000000 000001111 112467777777777788888999999965321
Q ss_pred ccCceeeeccccCCccEEEEEcC--CCeEEEEeCCCCEEEEeCCCCCCCCCCCCCCcccCeeccCCCCCceEEEEecCCc
Q 017198 196 ELQPRAIQTFRRKGIHVVRVSAG--DEHVVALDSSGYVYTWGKGYCGALGHGDEIDKTLPEPLSSLKSHLAVQVCARKRK 273 (375)
Q Consensus 196 ~~~p~~i~~~~~~~~~i~~i~~g--~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~p~~i~~~~~~~i~~i~~g~~~ 273 (375)
..+..+......|..++.. ....+.-..+|.|+.|-... + .....+ ......|..++....+
T Consensus 301 ----~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~-~----------~~~~~~-~~h~~~v~~~~~~~~~ 364 (464)
T 3v7d_B 301 ----KCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLEN-G----------ELMYTL-QGHTALVGLLRLSDKF 364 (464)
T ss_dssp ----EEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTT-T----------EEEEEE-CCCSSCEEEEEECSSE
T ss_pred ----cEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCC-C----------cEEEEE-eCCCCcEEEEEEcCCE
Confidence 1222222223356555553 34555667889999996422 1 000111 1223457777777777
Q ss_pred EEEEEcCCcEEEEeCCCCCCCCCCCCCCCCceecceEcCccCCCcEEEEEeCCCceEEEEcCCCEEEeeCC
Q 017198 274 TFVLVDTGSVYGFGWMGFGSLGFPDRGVSDKVLRPRILDSLRAHHVSQISTGLYHTVVVTDRGRLFGFGDN 344 (375)
Q Consensus 274 ~~~l~~~g~vy~~G~n~~gqlg~~~~~~~~~~~~p~~~~~~~~~~i~~i~~G~~h~~~l~~~g~v~~wG~n 344 (375)
.+.-..||.|..|-.....+ ...........+..+... ...++...+|.|+.|=-.
T Consensus 365 l~s~s~dg~v~vwd~~~~~~--------------~~~~~~~~~~~~~~~~~~-~~~l~~~~dg~i~iwd~~ 420 (464)
T 3v7d_B 365 LVSAAADGSIRGWDANDYSR--------------KFSYHHTNLSAITTFYVS-DNILVSGSENQFNIYNLR 420 (464)
T ss_dssp EEEEETTSEEEEEETTTCCE--------------EEEEECTTCCCEEEEEEC-SSEEEEEETTEEEEEETT
T ss_pred EEEEeCCCcEEEEECCCCce--------------eeeecCCCCccEEEEEeC-CCEEEEecCCeEEEEECC
Confidence 77778899999997543211 111111111234444443 335555568889999543
No 61
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=84.14 E-value=24 Score=31.84 Aligned_cols=198 Identities=7% Similarity=0.039 Sum_probs=97.9
Q ss_pred eEEEEEcCCcEEEeeCCCCCcccCCCCCCceecCEEccccCCcCeEEEEc---cCCeEEEEEcCCCEEEEeCCCCCcccC
Q 017198 61 HAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTA---GLNFTGFLTIRGHVHTCGSNTHGQLGH 137 (375)
Q Consensus 61 ~~~~lt~~g~vy~~G~n~~gqlg~~~~~~~~~~p~~i~~~~~~~i~~v~~---g~~~~~~lt~~g~v~~~G~n~~g~lg~ 137 (375)
..+.-..||.|..|-........ ....+..........|..++. +....+....+|.|+.|-......
T Consensus 196 ~l~s~~~dg~i~vwd~~~~~~~~------~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~--- 266 (430)
T 2xyi_A 196 YLLSASDDHTICLWDINATPKEH------RVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNT--- 266 (430)
T ss_dssp EEEEECTTSCEEEEETTSCCBGG------GEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCS---
T ss_pred eEEEEeCCCeEEEEeCCCCCCCC------ceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCC---
Confidence 55555678999999766522110 111111111122335666665 334455567899999996543210
Q ss_pred CCCCCCCcce-eecCCCCCCCEEEEEeCC---CeEEEEECCCcEEEEeCCCCCccCCCCCCCccCceeeeccccCCccEE
Q 017198 138 GDTLDRPTPK-SIAPLEEVGSVVQIAAGP---SYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVV 213 (375)
Q Consensus 138 ~~~~~~~~p~-~~~~~~~~~~i~~i~~g~---~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~p~~i~~~~~~~~~i~ 213 (375)
..+. .+.. ....|..++... ...+.-..+|.|..|-.....+ | +..+......|.
T Consensus 267 ------~~~~~~~~~--~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~-----------~--~~~~~~h~~~v~ 325 (430)
T 2xyi_A 267 ------SKPSHTVDA--HTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKL-----------K--LHSFESHKDEIF 325 (430)
T ss_dssp ------SSCSEEEEC--CSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTS-----------C--SEEEECCSSCEE
T ss_pred ------CcceeEeec--CCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCC-----------C--eEEeecCCCCEE
Confidence 0111 1111 115677777653 2344556789999997643211 1 111222233577
Q ss_pred EEEcCCCe---EEEEeCCCCEEEEeCCCCCCCCCCCCCCcccCeeccCC--CCCceEEEEecCC---cEEEEEcCCcEEE
Q 017198 214 RVSAGDEH---VVALDSSGYVYTWGKGYCGALGHGDEIDKTLPEPLSSL--KSHLAVQVCARKR---KTFVLVDTGSVYG 285 (375)
Q Consensus 214 ~i~~g~~~---~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~p~~i~~~--~~~~i~~i~~g~~---~~~~l~~~g~vy~ 285 (375)
.++..... .+.-..+|.|..|-....+..-.........|..+... ....|..++.... ..+....+|.|..
T Consensus 326 ~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~i 405 (430)
T 2xyi_A 326 QVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQV 405 (430)
T ss_dssp EEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEE
T ss_pred EEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEE
Confidence 77665432 44456788999997543221100000000112333222 2334777665433 3445567888888
Q ss_pred EeC
Q 017198 286 FGW 288 (375)
Q Consensus 286 ~G~ 288 (375)
|--
T Consensus 406 w~~ 408 (430)
T 2xyi_A 406 WQM 408 (430)
T ss_dssp EEE
T ss_pred eEc
Confidence 864
No 62
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=84.09 E-value=21 Score=31.25 Aligned_cols=224 Identities=13% Similarity=0.081 Sum_probs=120.6
Q ss_pred EecCCceEEEEEcCCcEEEeeCCCCCcccCCCCCCceecCEEccccCCcCeEEEEccC-----CeEEEEEcCCCEEEEeC
Q 017198 55 VSASENHAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGL-----NFTGFLTIRGHVHTCGS 129 (375)
Q Consensus 55 i~~g~~~~~~lt~~g~vy~~G~n~~gqlg~~~~~~~~~~p~~i~~~~~~~i~~v~~g~-----~~~~~lt~~g~v~~~G~ 129 (375)
.+......+++|+.|++|..-..+--..+..... ......+...++.+|+.+.... ...+++|++|.+.-.-.
T Consensus 49 ~~~t~d~ll~fT~~Gr~y~~~~~~lp~~~r~~~G--~~i~~~l~l~~~e~i~~~~~~~~~~~e~~~v~~T~~G~iKr~~l 126 (327)
T 3uc1_A 49 VCSTHDLILFFTTQGRVYRAKAYDLPEASRTARG--QHVANLLAFQPEERIAQVIQIRGYTDAPYLVLATRNGLVKKSKL 126 (327)
T ss_dssp EEETTSEEEEEETTSEEEEEEGGGSCBCCSSSCC--EEHHHHTTCCTTCCEEEEEEESSTTSSSEEEEEETTSEEEEEEG
T ss_pred EeCCCCEEEEEeCCCeEEEEEHHHCcCCCccCCC--EEHHHccCCCCCCEEEEEEEeccCCCCCEEEEEcCCCEEEEeEH
Confidence 3456778899999999998865442111111111 1111223334567788876654 46788999998887754
Q ss_pred CCCCcccCCCCCCCCcceeecCCCCCCCEEEEE--eCCCeEEEEECCCcEEEEeCC--CCCccCCCCCCCccCceeeecc
Q 017198 130 NTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIA--AGPSYMLAVTGNGVVYSFGSG--SNFCLGHGEQHDELQPRAIQTF 205 (375)
Q Consensus 130 n~~g~lg~~~~~~~~~p~~~~~~~~~~~i~~i~--~g~~~~~~lt~~g~v~~~G~n--~~gqlg~~~~~~~~~p~~i~~~ 205 (375)
..+.... ........+.....++.+. .+.++.+++|++|+++.+-.. .-..++....- .++..+
T Consensus 127 ~~~~~~~-------r~G~~~i~lke~D~lv~~~~~~~~d~ill~T~~G~~~rf~~~~~eip~~gr~a~G-----v~~i~L 194 (327)
T 3uc1_A 127 TDFDSNR-------SGGIVAVNLRDNDELVGAVLCSAGDDLLLVSANGQSIRFSATDEALRPMGRATSG-----VQGMRF 194 (327)
T ss_dssp GGGCCCC-------SSCEESCBCCTTCCEEEEEEECTTCEEEEEETTSEEEEEECCTTTSCCCCTTSBC-----EESSCC
T ss_pred HHhhccc-------cCceEEEEECCCCEEEEEEEecCCCEEEEEECCCeEEEEECcccccCcCCcCCCC-----eeeecC
Confidence 4332110 1112222222334555443 456789999999999999876 44333332211 122222
Q ss_pred ccCCccEEEEEcC--CCeEEEEeCCCCEEEEeCCCCCCCCCCCCCCcccCeeccCCCCCceEEEE--ecCCcEEEEEcCC
Q 017198 206 RRKGIHVVRVSAG--DEHVVALDSSGYVYTWGKGYCGALGHGDEIDKTLPEPLSSLKSHLAVQVC--ARKRKTFVLVDTG 281 (375)
Q Consensus 206 ~~~~~~i~~i~~g--~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~p~~i~~~~~~~i~~i~--~g~~~~~~l~~~g 281 (375)
. .+..|+.+..- ....+++|++|.+.-.-...+-..+.+....... ++.. .+..++.+. .+....++++++|
T Consensus 195 ~-~~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~R~~~G~~~~--~l~~-~~d~lv~~~~~~~~~~i~l~T~~G 270 (327)
T 3uc1_A 195 N-IDDRLLSLNVVREGTYLLVATSGGYAKRTAIEEYPVQGRGGKGVLTV--MYDR-RRGRLVGALIVDDDSELYAVTSGG 270 (327)
T ss_dssp C-TTCCEEEEEECCTTCEEEEEETTSEEEEEEGGGSCBCCTTSCCEESS--CCCT-TTCSEEEEEEECTTCEEEEEEGGG
T ss_pred C-CCCEEEEEEEECCCCEEEEEeCCCcEEEEEHHHccccCcCCCcEEEE--EecC-CCCeEEEEEEeCCCccEEEEcCCC
Confidence 2 23467666554 3467778999976665433332222211111111 0100 022344332 3567888999999
Q ss_pred cEEEEeCCCCCCCCC
Q 017198 282 SVYGFGWMGFGSLGF 296 (375)
Q Consensus 282 ~vy~~G~n~~gqlg~ 296 (375)
++..+-...--.+|.
T Consensus 271 ~~ir~~~~~i~~~gR 285 (327)
T 3uc1_A 271 GVIRTAARQVRKAGR 285 (327)
T ss_dssp CEEEEEGGGSCBCCT
T ss_pred eEEEEehhhccccCC
Confidence 999887655544444
No 63
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=83.79 E-value=22 Score=31.29 Aligned_cols=238 Identities=9% Similarity=0.010 Sum_probs=111.0
Q ss_pred CEEEEecC--CceEEEEEcCCcEEEeeCCCCCcccCCCCCCceecCEEccccCCcCeEEEEc--cCCeEEEEEcCCCEEE
Q 017198 51 HVVQVSAS--ENHAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTA--GLNFTGFLTIRGHVHT 126 (375)
Q Consensus 51 ~i~~i~~g--~~~~~~lt~~g~vy~~G~n~~gqlg~~~~~~~~~~p~~i~~~~~~~i~~v~~--g~~~~~~lt~~g~v~~ 126 (375)
.|..++.. ....+.-..||.|+.|-... + ....+. .....|..++. .....+....+|.|+.
T Consensus 110 ~v~~~~~s~~~~~l~~~~~dg~i~i~~~~~--~-----------~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~i~i 175 (425)
T 1r5m_A 110 QVTCLAWSHDGNSIVTGVENGELRLWNKTG--A-----------LLNVLN-FHRAPIVSVKWNKDGTHIISMDVENVTIL 175 (425)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEETTS--C-----------EEEEEC-CCCSCEEEEEECTTSSEEEEEETTCCEEE
T ss_pred ceEEEEEcCCCCEEEEEeCCCeEEEEeCCC--C-----------eeeecc-CCCccEEEEEECCCCCEEEEEecCCeEEE
Confidence 67776655 34556666788999995111 0 011111 11234555554 3445566778899999
Q ss_pred EeCCCCCcccCCCCCCCCc-cee-ecCCCCCCCEEEEEeC-CCeEEEEECCCcEEEEeCCCCCccCCCCCCCccCceeee
Q 017198 127 CGSNTHGQLGHGDTLDRPT-PKS-IAPLEEVGSVVQIAAG-PSYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQ 203 (375)
Q Consensus 127 ~G~n~~g~lg~~~~~~~~~-p~~-~~~~~~~~~i~~i~~g-~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~p~~i~ 203 (375)
|-......+..-....... ... .........+..++.. ....++...+|.|+.|-.... .+. .
T Consensus 176 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~------------~~~--~ 241 (425)
T 1r5m_A 176 WNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEK------------TPT--G 241 (425)
T ss_dssp EETTTTEEEEEECCC---------------CCCBSCCEEEETTEEEEECGGGCEEEEETTCS------------SCS--E
T ss_pred EECCCCcEEEEeeccccCccceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCC------------cee--e
Confidence 9654322211000000000 000 0000000002222211 344556677889999865331 111 1
Q ss_pred ccccCCccEEEEEc--CCCeEEEEeCCCCEEEEeCCCCCCCCCCCCCCcccCeeccCCCCCceEEEEecCC-cEEEEEcC
Q 017198 204 TFRRKGIHVVRVSA--GDEHVVALDSSGYVYTWGKGYCGALGHGDEIDKTLPEPLSSLKSHLAVQVCARKR-KTFVLVDT 280 (375)
Q Consensus 204 ~~~~~~~~i~~i~~--g~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~p~~i~~~~~~~i~~i~~g~~-~~~~l~~~ 280 (375)
.+......|..++. .....+....+|.|+.|-.... .....+ ......|..++...+ ..++...+
T Consensus 242 ~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~-----------~~~~~~-~~~~~~i~~~~~~~~~~l~~~~~d 309 (425)
T 1r5m_A 242 KLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNG-----------NSQNCF-YGHSQSIVSASWVGDDKVISCSMD 309 (425)
T ss_dssp EECCCSSCEEEEEEETTTTEEEEEETTSCEEEECSSSB-----------SCSEEE-CCCSSCEEEEEEETTTEEEEEETT
T ss_pred eeccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCC-----------ccceEe-cCCCccEEEEEECCCCEEEEEeCC
Confidence 11112224555544 3344555567888999854221 111111 112335666665443 45555678
Q ss_pred CcEEEEeCCCCCCCCCCCCCCCCceecceEcCccCCCcEEEEEeCC--CceEEEEcCCCEEEeeC
Q 017198 281 GSVYGFGWMGFGSLGFPDRGVSDKVLRPRILDSLRAHHVSQISTGL--YHTVVVTDRGRLFGFGD 343 (375)
Q Consensus 281 g~vy~~G~n~~gqlg~~~~~~~~~~~~p~~~~~~~~~~i~~i~~G~--~h~~~l~~~g~v~~wG~ 343 (375)
|.|+.|-..... +..........+..++... ...++-..+|.|+.|=.
T Consensus 310 ~~i~i~d~~~~~---------------~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~ 359 (425)
T 1r5m_A 310 GSVRLWSLKQNT---------------LLALSIVDGVPIFAGRISQDGQKYAVAFMDGQVNVYDL 359 (425)
T ss_dssp SEEEEEETTTTE---------------EEEEEECTTCCEEEEEECTTSSEEEEEETTSCEEEEEC
T ss_pred CcEEEEECCCCc---------------EeEecccCCccEEEEEEcCCCCEEEEEECCCeEEEEEC
Confidence 999998743210 1111111233566666553 33444457888999854
No 64
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=83.54 E-value=36 Score=33.49 Aligned_cols=197 Identities=12% Similarity=-0.005 Sum_probs=100.4
Q ss_pred CEEEEecCC--ceEEEEEcCCcEEEeeCCCCCcccCCCCCCceecCEEccccCCcCeEEEEcc----CCeEEEEEcCCCE
Q 017198 51 HVVQVSASE--NHAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAG----LNFTGFLTIRGHV 124 (375)
Q Consensus 51 ~i~~i~~g~--~~~~~lt~~g~vy~~G~n~~gqlg~~~~~~~~~~p~~i~~~~~~~i~~v~~g----~~~~~~lt~~g~v 124 (375)
.|..++... ...+.-..||.|.+|-.... .......+. .....|..++.. ....+....||.|
T Consensus 11 ~V~~l~~s~dg~~latg~~dg~I~vwd~~~~----------~~~~~~~l~-~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I 79 (753)
T 3jro_A 11 LIHDAVLDYYGKRLATCSSDKTIKIFEVEGE----------THKLIDTLT-GHEGPVWRVDWAHPKFGTILASCSYDGKV 79 (753)
T ss_dssp CEEEECCCSSSCCEEEEETTTEEEEEEEETT----------EEEEEEEEC-CCSSCEEEEEECCTTSCSEEEEEETTSCE
T ss_pred eeEEEEECCCCCeEEEEECCCcEEEEecCCC----------CCccceecc-CCcCceEEEEecCCCCCCEEEEEeCCCeE
Confidence 555555543 33444456899999854320 001111111 123356777653 4556677889999
Q ss_pred EEEeCCCCCcccCCCCCCCCcceeecCCCCCCCEEEEEeCC----CeEEEEECCCcEEEEeCCCCCccCCCCCCCccCce
Q 017198 125 HTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGP----SYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPR 200 (375)
Q Consensus 125 ~~~G~n~~g~lg~~~~~~~~~p~~~~~~~~~~~i~~i~~g~----~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~p~ 200 (375)
+.|-..... ..+.... ......|..++... ...+.-..+|.|..|-...... ..+.
T Consensus 80 ~vwd~~~~~----------~~~~~~~-~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~---------~~~~ 139 (753)
T 3jro_A 80 LIWKEENGR----------WSQIAVH-AVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGT---------TSPI 139 (753)
T ss_dssp EEEEEETTE----------EEEEEEE-CCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSC---------CCCE
T ss_pred EEEECCCCc----------ccccccc-cCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCC---------ccee
Confidence 999533210 0011111 11125688887764 3566667889999996533211 1111
Q ss_pred eeeccccCCccEEEEEcCC---------------CeEEEEeCCCCEEEEeCCCCCCCCCCCCCCcccCeeccCCCCCceE
Q 017198 201 AIQTFRRKGIHVVRVSAGD---------------EHVVALDSSGYVYTWGKGYCGALGHGDEIDKTLPEPLSSLKSHLAV 265 (375)
Q Consensus 201 ~i~~~~~~~~~i~~i~~g~---------------~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~p~~i~~~~~~~i~ 265 (375)
.+. .....|..++... ...+.-..+|.|..|-..... ....+..........|.
T Consensus 140 ~~~---~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~--------~~~~~~~~~~~h~~~V~ 208 (753)
T 3jro_A 140 IID---AHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDA--------QTYVLESTLEGHSDWVR 208 (753)
T ss_dssp EEE---CCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTT--------TEEEEEEEECCCSSCEE
T ss_pred Eee---cCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCc--------ccceeeeeecCCCCcEE
Confidence 111 1222455665543 345556788999998542210 00011111112234577
Q ss_pred EEEecCC-----cEEEEEcCCcEEEEeCC
Q 017198 266 QVCARKR-----KTFVLVDTGSVYGFGWM 289 (375)
Q Consensus 266 ~i~~g~~-----~~~~l~~~g~vy~~G~n 289 (375)
.++...+ ..+.-..||.|+.|-..
T Consensus 209 ~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~ 237 (753)
T 3jro_A 209 DVAWSPTVLLRSYLASVSQDRTCIIWTQD 237 (753)
T ss_dssp EEEECCCCSSSEEEEEEESSSCEEEEEES
T ss_pred EEEeccCCCCCCEEEEEecCCEEEEecCC
Confidence 7766544 34444578999999754
No 65
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=82.91 E-value=38 Score=33.27 Aligned_cols=191 Identities=9% Similarity=-0.047 Sum_probs=94.0
Q ss_pred CEEEEec--CCceEEEEEcCCcEEEeeCCCCCcccCCCCCCceecCEEccccCCcCeEEEEcc--CCeEEEEEcCCCEEE
Q 017198 51 HVVQVSA--SENHAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAG--LNFTGFLTIRGHVHT 126 (375)
Q Consensus 51 ~i~~i~~--g~~~~~~lt~~g~vy~~G~n~~gqlg~~~~~~~~~~p~~i~~~~~~~i~~v~~g--~~~~~~lt~~g~v~~ 126 (375)
.|..++. .....+.-..||.|++|-...... ...+.. ....|..++.. ....+..+.+|.|..
T Consensus 57 ~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~------------~~~~~~-~~~~v~~~~~s~~~~~l~~~~~dg~i~v 123 (814)
T 3mkq_A 57 PVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEK------------VVDFEA-HPDYIRSIAVHPTKPYVLSGSDDLTVKL 123 (814)
T ss_dssp CEEEEEEEGGGTEEEEEETTSEEEEEETTTCCE------------EEEEEC-CSSCEEEEEECSSSSEEEEEETTSEEEE
T ss_pred cEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcE------------EEEEec-CCCCEEEEEEeCCCCEEEEEcCCCEEEE
Confidence 5555544 345566667889999996554211 111111 12245555543 334555677888988
Q ss_pred EeCCCCCcccCCCCCCCCcceeecCCCCCCCEEEEEeCC---CeEEEEECCCcEEEEeCCCCCccCCCCCCCccCceeee
Q 017198 127 CGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGP---SYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQ 203 (375)
Q Consensus 127 ~G~n~~g~lg~~~~~~~~~p~~~~~~~~~~~i~~i~~g~---~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~p~~i~ 203 (375)
|-...... ....+... ...|..++... ...+.-..+|.|..|-.... .....+.
T Consensus 124 w~~~~~~~----------~~~~~~~~--~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~-----------~~~~~~~ 180 (814)
T 3mkq_A 124 WNWENNWA----------LEQTFEGH--EHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQS-----------TPNFTLT 180 (814)
T ss_dssp EEGGGTSE----------EEEEEECC--SSCEEEEEEETTEEEEEEEEETTSEEEEEETTCS-----------SCSEEEE
T ss_pred EECCCCce----------EEEEEcCC--CCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCC-----------cceeEEe
Confidence 85432100 11111111 14677777654 34455577899999965321 1111111
Q ss_pred ccccCCccEEEEEc--CCCeEEEEeCCCCEEEEeCCCCCCCCCCCCCCcccCeeccCCCCCceEEEEecCC--cEEEEEc
Q 017198 204 TFRRKGIHVVRVSA--GDEHVVALDSSGYVYTWGKGYCGALGHGDEIDKTLPEPLSSLKSHLAVQVCARKR--KTFVLVD 279 (375)
Q Consensus 204 ~~~~~~~~i~~i~~--g~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~p~~i~~~~~~~i~~i~~g~~--~~~~l~~ 279 (375)
............+. .....+....+|.|..|-.... .....+. .....|..++...+ ..+.-..
T Consensus 181 ~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~-----------~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~ 248 (814)
T 3mkq_A 181 TGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTK-----------SCVATLE-GHMSNVSFAVFHPTLPIIISGSE 248 (814)
T ss_dssp CCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTT-----------EEEEEEE-CCSSCEEEEEECSSSSEEEEEET
T ss_pred cCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCC-----------cEEEEEc-CCCCCEEEEEEcCCCCEEEEEeC
Confidence 11111112233333 3344555578889999954210 0111111 12234666554433 3444556
Q ss_pred CCcEEEEeCC
Q 017198 280 TGSVYGFGWM 289 (375)
Q Consensus 280 ~g~vy~~G~n 289 (375)
+|.|+.|-..
T Consensus 249 dg~v~vwd~~ 258 (814)
T 3mkq_A 249 DGTLKIWNSS 258 (814)
T ss_dssp TSCEEEEETT
T ss_pred CCeEEEEECC
Confidence 8999999754
No 66
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=82.91 E-value=21 Score=30.42 Aligned_cols=203 Identities=7% Similarity=-0.067 Sum_probs=104.4
Q ss_pred CEEEEecC--CceEEEEEcCCcEEEeeCCCCCcccCCCCCCceecCEEccccCCcCeEEEEc--cCC-eEEEEEcCCCEE
Q 017198 51 HVVQVSAS--ENHAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTA--GLN-FTGFLTIRGHVH 125 (375)
Q Consensus 51 ~i~~i~~g--~~~~~~lt~~g~vy~~G~n~~gqlg~~~~~~~~~~p~~i~~~~~~~i~~v~~--g~~-~~~~lt~~g~v~ 125 (375)
.|..++.. ....+.-..||.|+.|-..... ....+..+. .....|..++. ... ..++-+.+|.|+
T Consensus 13 ~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~---------~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~dg~i~ 82 (342)
T 1yfq_A 13 YISDIKIIPSKSLLLITSWDGSLTVYKFDIQA---------KNVDLLQSL-RYKHPLLCCNFIDNTDLQIYVGTVQGEIL 82 (342)
T ss_dssp CEEEEEEEGGGTEEEEEETTSEEEEEEEETTT---------TEEEEEEEE-ECSSCEEEEEEEESSSEEEEEEETTSCEE
T ss_pred cEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCC---------ccccceeee-ecCCceEEEEECCCCCcEEEEEcCCCeEE
Confidence 56666654 3445555678999998654311 011112221 12234555544 344 566677889999
Q ss_pred EEeC-CCCCcccCCCCCCCCcceeecCCCCCCCEEEEEeC-CCeEEEEECCCcEEEEeCCCCCccCCCCCCCccCceeee
Q 017198 126 TCGS-NTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAG-PSYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQ 203 (375)
Q Consensus 126 ~~G~-n~~g~lg~~~~~~~~~p~~~~~~~~~~~i~~i~~g-~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~p~~i~ 203 (375)
.|-. .. ++ ...+........|..++.. ....+....++.|..|-...... .. .......+.
T Consensus 83 ~wd~~~~-~~-----------~~~~~~~~~~~~v~~l~~~~~~~l~s~~~d~~i~iwd~~~~~~---~~--~~~~~~~~~ 145 (342)
T 1yfq_A 83 KVDLIGS-PS-----------FQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGD---GV--IAVKNLNSN 145 (342)
T ss_dssp EECSSSS-SS-----------EEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTT---BC--EEEEESCSS
T ss_pred EEEeccC-Cc-----------eEeccccCCCCceEEEEeCCCCEEEEEcCCCeEEEEccccccc---cc--ccccCCeee
Confidence 9943 21 11 1222220012567777654 56666678899999995422100 00 000000111
Q ss_pred ccccCCccEEEEEcCCCeEEEEeCCCCEEEEeCCCCCCCCCCCCCCcccCeeccCCCCCceEEEEec---CCcEEEEEcC
Q 017198 204 TFRRKGIHVVRVSAGDEHVVALDSSGYVYTWGKGYCGALGHGDEIDKTLPEPLSSLKSHLAVQVCAR---KRKTFVLVDT 280 (375)
Q Consensus 204 ~~~~~~~~i~~i~~g~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~p~~i~~~~~~~i~~i~~g---~~~~~~l~~~ 280 (375)
.+. ....|..++...+..++.+.+|.|+.|-....+. .............+..++.. ....++-..+
T Consensus 146 ~~~-~~~~v~~~~~~~~~l~~~~~d~~i~i~d~~~~~~---------~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d 215 (342)
T 1yfq_A 146 NTK-VKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCED---------DNGTIEESGLKYQIRDVALLPKEQEGYACSSID 215 (342)
T ss_dssp SSS-SCCCEEEEEECSSEEEEEESTTEEEEEESSCCTT---------CCCEEEECSCSSCEEEEEECSGGGCEEEEEETT
T ss_pred EEe-eCCceEEEEecCCcEEEEeCCCeEEEEECCcccc---------ccceeeecCCCCceeEEEECCCCCCEEEEEecC
Confidence 111 2236777877777766778899999997533110 01111222223346666554 3445555678
Q ss_pred CcEEEEeCCC
Q 017198 281 GSVYGFGWMG 290 (375)
Q Consensus 281 g~vy~~G~n~ 290 (375)
|.+..|-...
T Consensus 216 g~i~i~~~~~ 225 (342)
T 1yfq_A 216 GRVAVEFFDD 225 (342)
T ss_dssp SEEEEEECCT
T ss_pred CcEEEEEEcC
Confidence 8898887543
No 67
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=82.56 E-value=24 Score=30.86 Aligned_cols=236 Identities=9% Similarity=-0.009 Sum_probs=109.2
Q ss_pred eCCcEEEEeCCCCCccCCCCCCCeeeeeeeecCCCCCCEEEEecCC---------ceEEEEEcCCcEEEeeCCCCCcccC
Q 017198 14 SNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSASE---------NHAAFVLQSGQVFTCGDNSSFCCGH 84 (375)
Q Consensus 14 ~~g~l~~wG~n~~g~Lg~~~~~~~~~~~~~~~~~~~~~i~~i~~g~---------~~~~~lt~~g~vy~~G~n~~gqlg~ 84 (375)
.|+.|++|-...... .........+. .....|..++... ...+.-..||.|+.|-......
T Consensus 34 ~dg~i~iw~~~~~~~------~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~--- 103 (397)
T 1sq9_A 34 GDGYLKVWDNKLLDN------ENPKDKSYSHF-VHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDE--- 103 (397)
T ss_dssp TTSEEEEEESBCCTT------CCGGGGEEEEE-CCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTT---
T ss_pred CCCEEEEEECCCccc------ccCCCcceEEe-cCCCcEEEEEEecccccCCccccEEEEEcCCCCEEEEEccCCcc---
Confidence 788888887653210 00000111221 1223666665543 3445556789999986443110
Q ss_pred CCCCCceecCEEccccC----CcCeEEEEcc------CCe-EEEEEcCCCEEEEeCCCCCcccCCCCCCCCcce-eecC-
Q 017198 85 RDTNRPIFRPRLVEALK----GVPCKQVTAG------LNF-TGFLTIRGHVHTCGSNTHGQLGHGDTLDRPTPK-SIAP- 151 (375)
Q Consensus 85 ~~~~~~~~~p~~i~~~~----~~~i~~v~~g------~~~-~~~lt~~g~v~~~G~n~~g~lg~~~~~~~~~p~-~~~~- 151 (375)
........+.... ...|..++.. ... .+....+|.|+.|-......-.... .....|. .+..
T Consensus 104 ----~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~ 178 (397)
T 1sq9_A 104 ----TKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSL-TLNWSPTLELQGT 178 (397)
T ss_dssp ----TCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHT-TTCCCCEEEEEEE
T ss_pred ----cccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccccc-eeeccCcceeeee
Confidence 0000012222221 2355555544 444 5566788999999544300000000 0111111 1110
Q ss_pred ----CCCCCCEEEEEeCCC-eEEEEECCCcEEEEeCCCCCccCCCCCCCccCceeeecccc---C---CccEEEEEcC--
Q 017198 152 ----LEEVGSVVQIAAGPS-YMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRR---K---GIHVVRVSAG-- 218 (375)
Q Consensus 152 ----~~~~~~i~~i~~g~~-~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~p~~i~~~~~---~---~~~i~~i~~g-- 218 (375)
......|..++.... ..+.-..+|.|+.|-.... ..+..+.. . ...|..++..
T Consensus 179 ~~~~~~~~~~i~~~~~~~~~~l~~~~~dg~i~i~d~~~~--------------~~~~~~~~~~~h~~~~~~i~~i~~~~~ 244 (397)
T 1sq9_A 179 VESPMTPSQFATSVDISERGLIATGFNNGTVQISELSTL--------------RPLYNFESQHSMINNSNSIRSVKFSPQ 244 (397)
T ss_dssp ECCSSSSCCCCCEEEECTTSEEEEECTTSEEEEEETTTT--------------EEEEEEECCC---CCCCCEEEEEECSS
T ss_pred eccccCCCCCceEEEECCCceEEEEeCCCcEEEEECCCC--------------ceeEEEeccccccccCCccceEEECCC
Confidence 111245666666543 4444457788999865321 11221221 1 3356666553
Q ss_pred CCeEEEEeCC---CCEEEEeCCCCCCCCCCCCCCcccCeeccC------------CCCCceEEEEec--CCcEEEEEcCC
Q 017198 219 DEHVVALDSS---GYVYTWGKGYCGALGHGDEIDKTLPEPLSS------------LKSHLAVQVCAR--KRKTFVLVDTG 281 (375)
Q Consensus 219 ~~~~~~lt~~---g~v~~~G~n~~gqlg~~~~~~~~~p~~i~~------------~~~~~i~~i~~g--~~~~~~l~~~g 281 (375)
....++-..+ |.|+.|-......+ ..+.. .....|..++.. ....+.-..+|
T Consensus 245 ~~~l~~~~~d~~~g~i~i~d~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg 313 (397)
T 1sq9_A 245 GSLLAIAHDSNSFGCITLYETEFGERI-----------GSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDG 313 (397)
T ss_dssp TTEEEEEEEETTEEEEEEEETTTCCEE-----------EEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTS
T ss_pred CCEEEEEecCCCCceEEEEECCCCccc-----------ceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCC
Confidence 3344445666 88888865321110 01111 023456666654 33444456789
Q ss_pred cEEEEeCC
Q 017198 282 SVYGFGWM 289 (375)
Q Consensus 282 ~vy~~G~n 289 (375)
.|+.|-..
T Consensus 314 ~i~iwd~~ 321 (397)
T 1sq9_A 314 KLRFWDVK 321 (397)
T ss_dssp EEEEEETT
T ss_pred eEEEEEcC
Confidence 99999743
No 68
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=82.37 E-value=21 Score=32.10 Aligned_cols=141 Identities=8% Similarity=0.075 Sum_probs=76.2
Q ss_pred ceEEEEEcCCcEEEeeCCCCCcccCCCC-------CCceecCEEccccCCcCeEEEEccCCeEEEEEcCCCEEEEeCCCC
Q 017198 60 NHAAFVLQSGQVFTCGDNSSFCCGHRDT-------NRPIFRPRLVEALKGVPCKQVTAGLNFTGFLTIRGHVHTCGSNTH 132 (375)
Q Consensus 60 ~~~~~lt~~g~vy~~G~n~~gqlg~~~~-------~~~~~~p~~i~~~~~~~i~~v~~g~~~~~~lt~~g~v~~~G~n~~ 132 (375)
-..++++.+..++..|.++.-.+..... ......|.....+.. |.+++. ....+++.+++.|..|=....
T Consensus 40 ~nlLais~~~gll~a~~~~~l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~--V~~l~f-d~~~L~v~~~~~l~v~dv~sl 116 (388)
T 1xip_A 40 LQNLDISNSKSLFVAASGSKAVVGELQLLRDHITSDSTPLTFKWEKEIPD--VIFVCF-HGDQVLVSTRNALYSLDLEEL 116 (388)
T ss_dssp CBCEEEETTTTEEEEEETTEEEEEEHHHHHHHHHSSSCCCCCSEEEECTT--EEEEEE-ETTEEEEEESSEEEEEESSST
T ss_pred ccEEEEcCCCCEEEEeCCCEEEEEEhhHhhhhhccccccccceEEeeCCC--eeEEEE-CCCEEEEEcCCcEEEEEchhh
Confidence 4556666666666665554222211000 000133422223333 888988 777777778899999854332
Q ss_pred CcccCCCCCCCCcceeecCCCCCCCEEEEEeCCCeEEEEECCCcEEEEeCCCCCccCCCCCCCccCceeeeccccCCccE
Q 017198 133 GQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGPSYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHV 212 (375)
Q Consensus 133 g~lg~~~~~~~~~p~~~~~~~~~~~i~~i~~g~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~p~~i~~~~~~~~~i 212 (375)
.+ ........ ..+.++.+-....++++.+|.|+.|-..... .. .+. ..|
T Consensus 117 ~~-----------~~~~~~~~--~~v~~i~~~~p~~av~~~dG~L~v~dl~~~~----------~~--~~~------~~V 165 (388)
T 1xip_A 117 SE-----------FRTVTSFE--KPVFQLKNVNNTLVILNSVNDLSALDLRTKS----------TK--QLA------QNV 165 (388)
T ss_dssp TC-----------EEEEEECS--SCEEEEEECSSEEEEEETTSEEEEEETTTCC----------EE--EEE------ESE
T ss_pred hc-----------cCccceee--cceeeEEecCCCEEEEECCCCEEEEEccCCc----------cc--ccc------CCc
Confidence 21 11112222 3466777666667778999999999553211 01 111 156
Q ss_pred EEEEcCCCeEEEEeCCCCEEEE
Q 017198 213 VRVSAGDEHVVALDSSGYVYTW 234 (375)
Q Consensus 213 ~~i~~g~~~~~~lt~~g~v~~~ 234 (375)
..++-..+-.++...+|++..|
T Consensus 166 s~v~WSpkG~~vg~~dg~i~~~ 187 (388)
T 1xip_A 166 TSFDVTNSQLAVLLKDRSFQSF 187 (388)
T ss_dssp EEEEECSSEEEEEETTSCEEEE
T ss_pred eEEEEcCCceEEEEcCCcEEEE
Confidence 6666655555555566666665
No 69
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=81.90 E-value=41 Score=33.00 Aligned_cols=229 Identities=16% Similarity=0.059 Sum_probs=111.4
Q ss_pred CEEEEecC--CceEEEEEcCCcEEEeeCCCCCcccCCCCCCceecCEEccccCCcCeEEEE--ccCCeEEEEEcCCCEEE
Q 017198 51 HVVQVSAS--ENHAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVT--AGLNFTGFLTIRGHVHT 126 (375)
Q Consensus 51 ~i~~i~~g--~~~~~~lt~~g~vy~~G~n~~gqlg~~~~~~~~~~p~~i~~~~~~~i~~v~--~g~~~~~~lt~~g~v~~ 126 (375)
.|..|+.. +...++-..+|.|..|-..... ....+.. ....|..++ ......++.+.+|.|.+
T Consensus 15 ~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~------------~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~dg~i~v 81 (814)
T 3mkq_A 15 RVKGIDFHPTEPWVLTTLYSGRVEIWNYETQV------------EVRSIQV-TETPVRAGKFIARKNWIIVGSDDFRIRV 81 (814)
T ss_dssp CEEEEEECSSSSEEEEEETTSEEEEEETTTTE------------EEEEEEC-CSSCEEEEEEEGGGTEEEEEETTSEEEE
T ss_pred ceEEEEECCCCCEEEEEeCCCEEEEEECCCCc------------eEEEEec-CCCcEEEEEEeCCCCEEEEEeCCCeEEE
Confidence 55555554 3445555668889998544311 1111111 122344443 34455666778899999
Q ss_pred EeCCCCCcccCCCCCCCCcceeecCCCCCCCEEEEEeCCC--eEEEEECCCcEEEEeCCCCCccCCCCCCCccCceeeec
Q 017198 127 CGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGPS--YMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQT 204 (375)
Q Consensus 127 ~G~n~~g~lg~~~~~~~~~p~~~~~~~~~~~i~~i~~g~~--~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~p~~i~~ 204 (375)
|-...... ...+... ...|..++...+ +.+.-..+|.|..|-.... ......
T Consensus 82 w~~~~~~~-----------~~~~~~~--~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~-------------~~~~~~ 135 (814)
T 3mkq_A 82 FNYNTGEK-----------VVDFEAH--PDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENN-------------WALEQT 135 (814)
T ss_dssp EETTTCCE-----------EEEEECC--SSCEEEEEECSSSSEEEEEETTSEEEEEEGGGT-------------SEEEEE
T ss_pred EECCCCcE-----------EEEEecC--CCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCC-------------ceEEEE
Confidence 95442211 1111111 146777776543 4455567889999864221 011111
Q ss_pred cccCCccEEEEEcCC---CeEEEEeCCCCEEEEeCCCCCCCCCCCCCCcccCeeccCCCCCceEEEEe----cCCcEEEE
Q 017198 205 FRRKGIHVVRVSAGD---EHVVALDSSGYVYTWGKGYCGALGHGDEIDKTLPEPLSSLKSHLAVQVCA----RKRKTFVL 277 (375)
Q Consensus 205 ~~~~~~~i~~i~~g~---~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~p~~i~~~~~~~i~~i~~----g~~~~~~l 277 (375)
+......|..++... ...+....+|.|+.|-..... ....+.......+..++. .....++-
T Consensus 136 ~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~-----------~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~ 204 (814)
T 3mkq_A 136 FEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQST-----------PNFTLTTGQERGVNYVDYYPLPDKPYMITA 204 (814)
T ss_dssp EECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSS-----------CSEEEECCCTTCCCEEEECCSTTCCEEEEE
T ss_pred EcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCc-----------ceeEEecCCCCCEEEEEEEECCCCCEEEEE
Confidence 222233566666543 334445788999999642211 111111111122333333 33344455
Q ss_pred EcCCcEEEEeCCCCCCCCCCCCCCCCceecceEcCccCCCcEEEEEeCCCc--eEEEEcCCCEEEeeCC
Q 017198 278 VDTGSVYGFGWMGFGSLGFPDRGVSDKVLRPRILDSLRAHHVSQISTGLYH--TVVVTDRGRLFGFGDN 344 (375)
Q Consensus 278 ~~~g~vy~~G~n~~gqlg~~~~~~~~~~~~p~~~~~~~~~~i~~i~~G~~h--~~~l~~~g~v~~wG~n 344 (375)
..+|.|+.|-.... .....+. .....|..++..... .+.-..+|.|+.|-..
T Consensus 205 ~~dg~i~~~d~~~~--------------~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~ 258 (814)
T 3mkq_A 205 SDDLTIKIWDYQTK--------------SCVATLE-GHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSS 258 (814)
T ss_dssp CTTSEEEEEETTTT--------------EEEEEEE-CCSSCEEEEEECSSSSEEEEEETTSCEEEEETT
T ss_pred eCCCEEEEEECCCC--------------cEEEEEc-CCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECC
Confidence 67888999864211 0111111 112356666554333 3344467888888543
No 70
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=81.69 E-value=24 Score=30.13 Aligned_cols=17 Identities=6% Similarity=0.089 Sum_probs=12.5
Q ss_pred CeeEEEeCCcEEEEeCC
Q 017198 8 YHTLLISNSSVFSCGSS 24 (375)
Q Consensus 8 ~~~~~l~~g~l~~wG~n 24 (375)
.|++++.+++||++|-.
T Consensus 63 ~~~~~~~~~~lyv~GG~ 79 (308)
T 1zgk_A 63 GLAGCVVGGLLYAVGGR 79 (308)
T ss_dssp SCEEEEETTEEEEECCE
T ss_pred cceEEEECCEEEEECCC
Confidence 45555588999999964
No 71
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=81.08 E-value=24 Score=29.69 Aligned_cols=137 Identities=12% Similarity=0.073 Sum_probs=66.9
Q ss_pred eeEEE-eCCcEEEEeCCCCCccCCCCCCCeeeeeeeecCCCC-CCEEEEecCC--ceEEEEEcCCcEEEeeCCCCCcccC
Q 017198 9 HTLLI-SNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSA-AHVVQVSASE--NHAAFVLQSGQVFTCGDNSSFCCGH 84 (375)
Q Consensus 9 ~~~~l-~~g~l~~wG~n~~g~Lg~~~~~~~~~~~~~~~~~~~-~~i~~i~~g~--~~~~~lt~~g~vy~~G~n~~gqlg~ 84 (375)
..++. .|+.|++|=... |+ ....+.+... ..|..|+... .+.+.-..||.|..|-......
T Consensus 37 ~~lAvg~D~tV~iWd~~t-g~-----------~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~--- 101 (318)
T 4ggc_A 37 NVLAVALDNSVYLWSASS-GD-----------ILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKR--- 101 (318)
T ss_dssp SEEEEEETTEEEEEETTT-CC-----------EEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEE---
T ss_pred CEEEEEeCCEEEEEECCC-CC-----------EEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCcee---
Confidence 35666 788888885332 11 1222333322 2566666544 3444456789999995543111
Q ss_pred CCCCCceecCEEccccCCcCeEEEEccCCeEEEEEcCCCEEEEeCCCCCcccCCCCCCCCcceeecCCCCCCCEEEEEeC
Q 017198 85 RDTNRPIFRPRLVEALKGVPCKQVTAGLNFTGFLTIRGHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAG 164 (375)
Q Consensus 85 ~~~~~~~~~p~~i~~~~~~~i~~v~~g~~~~~~lt~~g~v~~~G~n~~g~lg~~~~~~~~~p~~~~~~~~~~~i~~i~~g 164 (375)
...+. .....+..++......+.-..++.+..|-...... ....+.... ..+..++..
T Consensus 102 ---------~~~~~-~h~~~~~~~~~~~~~l~s~~~~~~~~~~~~~~~~~----------~~~~~~~~~--~~~~~~~~~ 159 (318)
T 4ggc_A 102 ---------LRNMT-SHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEH----------HVATLSGHS--QEVCGLRWA 159 (318)
T ss_dssp ---------EEEEE-CCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSC----------EEEEEECCS--SCEEEEEEC
T ss_pred ---------EEEec-CccceEEEeecCCCEEEEEecCCceEeeecCCCce----------eEEEEcCcc--CceEEEEEc
Confidence 01111 11224455555555555556666666664322111 001111111 334444433
Q ss_pred --CCeEEEEECCCcEEEEeC
Q 017198 165 --PSYMLAVTGNGVVYSFGS 182 (375)
Q Consensus 165 --~~~~~~lt~~g~v~~~G~ 182 (375)
..+.+.-..+|.|..|-.
T Consensus 160 ~~~~~l~s~~~d~~i~iwd~ 179 (318)
T 4ggc_A 160 PDGRHLASGGNDNLVNVWPS 179 (318)
T ss_dssp TTSSEEEEEETTSCEEEEES
T ss_pred CCCCEEEEEecCcceeEEEC
Confidence 345555678899999965
No 72
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=80.59 E-value=21 Score=30.21 Aligned_cols=18 Identities=11% Similarity=-0.003 Sum_probs=12.4
Q ss_pred CCeEEEEECCCcEEEEeCC
Q 017198 165 PSYMLAVTGNGVVYSFGSG 183 (375)
Q Consensus 165 ~~~~~~lt~~g~v~~~G~n 183 (375)
..|+++.. +++||++|-.
T Consensus 104 ~~~~~~~~-~~~lyv~GG~ 121 (301)
T 2vpj_A 104 GLAGATTL-GDMIYVSGGF 121 (301)
T ss_dssp BSCEEEEE-TTEEEEECCB
T ss_pred cceeEEEE-CCEEEEEccc
Confidence 34555554 7899999853
No 73
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}
Probab=80.45 E-value=32 Score=30.74 Aligned_cols=236 Identities=15% Similarity=0.099 Sum_probs=121.4
Q ss_pred eecCCCCCCEEE--EecCCceEEEEEcCCcEEEeeCCCCCcccCCCCCCceecCEEccccCCcCeEEEEcc-----CCeE
Q 017198 43 RINFPSAAHVVQ--VSASENHAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAG-----LNFT 115 (375)
Q Consensus 43 ~~~~~~~~~i~~--i~~g~~~~~~lt~~g~vy~~G~n~~gqlg~~~~~~~~~~p~~i~~~~~~~i~~v~~g-----~~~~ 115 (375)
-+.+.+...+.. ++.+..+.+++|+.|++|.+-..+--..+..... ......+....+.+|+.+..- ..+.
T Consensus 39 ~~~lke~D~l~~~~~~~t~d~ll~fT~~G~~~~~~~~eip~~~r~a~G--~~i~~ll~L~~~e~Iv~~~~~~~~~~~~~l 116 (370)
T 3l6v_A 39 AASTKEEDFIDQLWLVNTHDTLLTFTSSGKVFWLPVHQLPEAGSNARG--RPIINWIPLESGERVQAVLPVREYADNRYV 116 (370)
T ss_dssp EEECSCCCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCTTSCC--EEGGGSCCCCTTCCEEEEEEESCCCTTCEE
T ss_pred ecccCCCCEEEEEEEecCCCEEEEEeCCCeEEEEEHHHCcCCCcccCC--cCHhhccCCCCCCEEEEEEEeccCCCCcEE
Confidence 344444445543 4456677899999999998865542222211111 111112223346677777653 3468
Q ss_pred EEEEcCCCEEEEeCCCCCcccCCCCCCCCcceeecCCCCCCCEEEEE--eCCCeEEEEECCCcEEEEeCCCCCccCCCCC
Q 017198 116 GFLTIRGHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIA--AGPSYMLAVTGNGVVYSFGSGSNFCLGHGEQ 193 (375)
Q Consensus 116 ~~lt~~g~v~~~G~n~~g~lg~~~~~~~~~p~~~~~~~~~~~i~~i~--~g~~~~~~lt~~g~v~~~G~n~~gqlg~~~~ 193 (375)
+++|++|.+--.-...+.... ........+.....++.+. .+....+++|++|++..+-...-..+|....
T Consensus 117 l~~T~~G~vKrt~l~e~~~~~-------~~G~~ai~L~~~d~lv~v~~~~~~~~i~l~T~~G~~irf~~~~v~~~gR~a~ 189 (370)
T 3l6v_A 117 FMATRNGTVKKTPLSEFAFRL-------ARGKIAINLDEGDALVGVALTDGDRDVLLFASNGKTVRFGESTVRSMGRTAT 189 (370)
T ss_dssp EEEETTSEEEEEEGGGGCSCC-------TTCEESSCCCTTCCEEEEEEECSCCEEEEEETTSEEEEEEGGGSCBCCTTCC
T ss_pred EEEeCCCeEEEeEHHHhhccc-------CCceEEEEeCCCCEEEEEEEeCCCceEEEEeCCCeEEEEEccccCccCCCCC
Confidence 889999988877654443211 1112222233334555443 4567899999999999987765544444322
Q ss_pred CCccCceeeeccccCCccEEEEEc-------------------------------------CCCeEEEEeCCCCEEEEeC
Q 017198 194 HDELQPRAIQTFRRKGIHVVRVSA-------------------------------------GDEHVVALDSSGYVYTWGK 236 (375)
Q Consensus 194 ~~~~~p~~i~~~~~~~~~i~~i~~-------------------------------------g~~~~~~lt~~g~v~~~G~ 236 (375)
- .+...+. .+..|+.+.. .....+.+|++|-.--.-.
T Consensus 190 G-----V~~i~L~-~~d~Vv~~~~~~~~~~~~~~~~~~~~~~~~~t~~g~~~~~~~~~~~~~~~~il~vTe~G~gKrt~~ 263 (370)
T 3l6v_A 190 G-----VRGIRLA-KGEEVVSLIVSERAGGVEDEVEDESAEEVVETTDGAEPAVIDVADNGDVAYILTATENGYGKRTPL 263 (370)
T ss_dssp C-----EECCCCC-TTCCEEEEEEECCC-----------------------------------CEEEEEETTSEEEEEEG
T ss_pred C-----eeeEEeC-CCCEEEEEEEeccccccccccccccccccccccccccccccccccccCCceEEEeeCCCCEEEEEH
Confidence 1 1111111 0112222211 2245677788885555444
Q ss_pred CCCCCCCCCCCCCcccCeeccCCCCCceEEE--EecCCcEEEEEcCCcEEEEeCCCCCCCCC
Q 017198 237 GYCGALGHGDEIDKTLPEPLSSLKSHLAVQV--CARKRKTFVLVDTGSVYGFGWMGFGSLGF 296 (375)
Q Consensus 237 n~~gqlg~~~~~~~~~p~~i~~~~~~~i~~i--~~g~~~~~~l~~~g~vy~~G~n~~gqlg~ 296 (375)
..+-..+.+....... ++. ..+..++.+ ....+..+++++.|++.-.--......|.
T Consensus 264 ~e~~~~~Rg~kGv~~~--k~~-~~~g~lv~~~~v~~~d~i~liT~~G~~iR~~v~~i~~~gR 322 (370)
T 3l6v_A 264 AEYPRKGRGTQGVIGI--QTT-ERNGKLVRAVLLGSTDEVMLISDGGTLVRTRGSEISRVGR 322 (370)
T ss_dssp GGSCCBCTTSCCEESS--CCC-TTTCSEEEEEEECTTCEEEEEETTCCEEEEEGGGSCBCCS
T ss_pred HHhcccccCCcceEEE--Eec-CCCCcEEEEEEeCCCceEEEEcCCCeEEEeeHhhCCccCC
Confidence 4444444433221111 111 011233332 23456788899999998876655555554
No 74
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=80.39 E-value=26 Score=29.65 Aligned_cols=172 Identities=8% Similarity=-0.075 Sum_probs=81.0
Q ss_pred CCEEEEecC----CceEEEEEcCCcEEEeeCCCCCcccCCCCCCceecCEEccccCCcCeEEEEcc----CCeEEEEEcC
Q 017198 50 AHVVQVSAS----ENHAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAG----LNFTGFLTIR 121 (375)
Q Consensus 50 ~~i~~i~~g----~~~~~~lt~~g~vy~~G~n~~gqlg~~~~~~~~~~p~~i~~~~~~~i~~v~~g----~~~~~~lt~~ 121 (375)
..|..|+.. ....+.-..||.|..|-........ ......+..........|..++.. ....+..+.+
T Consensus 58 ~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~----~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d 133 (351)
T 3f3f_A 58 SSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEEC----SGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGND 133 (351)
T ss_dssp SCEEEEEECCGGGCSEEEEEETTSCEEEEEECTTSCTT----SSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETT
T ss_pred CcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCcccc----cccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCC
Confidence 378777765 3456666789999999765421100 000111111111223457777665 3456667889
Q ss_pred CCEEEEeCCCCCcccCCCCCCCCcceeecCCCCCCCEEEEEeC-----CCeEEEEECCCcEEEEeCCCCCccCCCCCCCc
Q 017198 122 GHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAG-----PSYMLAVTGNGVVYSFGSGSNFCLGHGEQHDE 196 (375)
Q Consensus 122 g~v~~~G~n~~g~lg~~~~~~~~~p~~~~~~~~~~~i~~i~~g-----~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~ 196 (375)
|.|+.|=......+..-..........+........+..++.. ....++-..++.+..|-...
T Consensus 134 g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~------------ 201 (351)
T 3f3f_A 134 GILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKD------------ 201 (351)
T ss_dssp CEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTT------------
T ss_pred CcEEEecCCChHHhccccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCC------------
Confidence 9999995443221110000000000000001111344555443 23344445555554442211
Q ss_pred cCceeeeccccCCccEEEEEcCCCe------EEEEeCCCCEEEEeCC
Q 017198 197 LQPRAIQTFRRKGIHVVRVSAGDEH------VVALDSSGYVYTWGKG 237 (375)
Q Consensus 197 ~~p~~i~~~~~~~~~i~~i~~g~~~------~~~lt~~g~v~~~G~n 237 (375)
..+..+..+......|..++..... .+.-..||.|..|-..
T Consensus 202 ~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~ 248 (351)
T 3f3f_A 202 GKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKIT 248 (351)
T ss_dssp SCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEE
T ss_pred CceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCC
Confidence 1122233333334467777766552 3344688999999653
No 75
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=80.16 E-value=30 Score=30.23 Aligned_cols=270 Identities=11% Similarity=0.013 Sum_probs=126.9
Q ss_pred eEEE-eCCcEEEEeCCCCCccCCCCCCC---eeeeee----eecCCCCCCEEEEecC-CceEEEEEcCCcEEEeeCCCCC
Q 017198 10 TLLI-SNSSVFSCGSSLCGVLGHGPETT---QCVSFT----RINFPSAAHVVQVSAS-ENHAAFVLQSGQVFTCGDNSSF 80 (375)
Q Consensus 10 ~~~l-~~g~l~~wG~n~~g~Lg~~~~~~---~~~~~~----~~~~~~~~~i~~i~~g-~~~~~~lt~~g~vy~~G~n~~g 80 (375)
++.. .||++.+-+++...++.-+.... ....+. ...+.....|..|+.. ....+.-..||.|..|-.....
T Consensus 35 ~~~fs~dG~~l~~~sd~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~l~~~s~dg~v~lWd~~~~~ 114 (344)
T 4gqb_B 35 AARYRSDGALLLGASSLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGERGILVASDSGAVELWELDENE 114 (344)
T ss_dssp EEEECTTSCEEEEEECCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETTTEEEEEETTSEEEEEEECTTS
T ss_pred EEEECCCCCEEEEEeCCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeCCCeEEEEECCCEEEEEeccCCC
Confidence 4556 89999888876655543211000 000000 0000112256666643 3445555678899998544311
Q ss_pred cccCCCCCCceecCEEccccCCcCeEEEEc--cCCeEEEEEcCCCEEEEeCCCCCcccCCCCCCCCcceeecCCC-CCCC
Q 017198 81 CCGHRDTNRPIFRPRLVEALKGVPCKQVTA--GLNFTGFLTIRGHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLE-EVGS 157 (375)
Q Consensus 81 qlg~~~~~~~~~~p~~i~~~~~~~i~~v~~--g~~~~~~lt~~g~v~~~G~n~~g~lg~~~~~~~~~p~~~~~~~-~~~~ 157 (375)
..........--...|..|+. ...+.+.-..||.|..|-.... ..+..+. -...
T Consensus 115 ---------~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~--------------~~~~~~~~h~~~ 171 (344)
T 4gqb_B 115 ---------TLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQ--------------VVLSSYRAHAAQ 171 (344)
T ss_dssp ---------SCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT--------------EEEEEECCCSSC
T ss_pred ---------ceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCC--------------cEEEEEcCcCCc
Confidence 011111111111224555554 3344555667888888843321 1122221 1256
Q ss_pred EEEEEeCCC---eEEEEECCCcEEEEeCCCCCccCCCCCCCccCceeeeccccCCccEEEEEcCC--CeEE-EEeCCCCE
Q 017198 158 VVQIAAGPS---YMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGD--EHVV-ALDSSGYV 231 (375)
Q Consensus 158 i~~i~~g~~---~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~p~~i~~~~~~~~~i~~i~~g~--~~~~-~lt~~g~v 231 (375)
|..++.... ..+.-..|+.|..|-...... ...+. .......+..++... .+.+ .-..||.|
T Consensus 172 V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~-----------~~~~~-~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v 239 (344)
T 4gqb_B 172 VTCVAASPHKDSVFLSCSEDNRILLWDTRCPKP-----------ASQIG-CSAPGYLPTSLAWHPQQSEVFVFGDENGTV 239 (344)
T ss_dssp EEEEEECSSCTTEEEEEETTSCEEEEETTSSSC-----------EEECC-----CCCEEEEEECSSCTTEEEEEETTSEE
T ss_pred eEEEEecCCCCCceeeeccccccccccccccce-----------eeeee-cceeeccceeeeecCCCCcceEEeccCCcE
Confidence 777776532 233456789999995422110 01111 111122345554432 2233 34678888
Q ss_pred EEEeCCCCCCCCCCCCCCcccCeeccCCCCCceEEEEecC---CcEEEEEcCCcEEEEeCCCCCCCCCCCCCCCCceecc
Q 017198 232 YTWGKGYCGALGHGDEIDKTLPEPLSSLKSHLAVQVCARK---RKTFVLVDTGSVYGFGWMGFGSLGFPDRGVSDKVLRP 308 (375)
Q Consensus 232 ~~~G~n~~gqlg~~~~~~~~~p~~i~~~~~~~i~~i~~g~---~~~~~l~~~g~vy~~G~n~~gqlg~~~~~~~~~~~~p 308 (375)
..|-...... ...+. .....|..|+... ...+.-..|+.|+.|-... ++ .
T Consensus 240 ~~wd~~~~~~-----------~~~~~-~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~-~~--------------~ 292 (344)
T 4gqb_B 240 SLVDTKSTSC-----------VLSSA-VHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSL-SE--------------L 292 (344)
T ss_dssp EEEESCC--C-----------CEEEE-CCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTC-CE--------------E
T ss_pred EEEECCCCcE-----------EEEEc-CCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCC-Cc--------------E
Confidence 8885422110 01111 1233577776542 2334456889999995321 11 1
Q ss_pred eEcCccCCCcEEEEEeCC-CceEEE--EcCCCEEEee
Q 017198 309 RILDSLRAHHVSQISTGL-YHTVVV--TDRGRLFGFG 342 (375)
Q Consensus 309 ~~~~~~~~~~i~~i~~G~-~h~~~l--~~~g~v~~wG 342 (375)
..+.. ....|..++... ...++. ..||+|..|=
T Consensus 293 ~~~~~-H~~~V~~v~~sp~~~~llas~s~D~~v~~w~ 328 (344)
T 4gqb_B 293 FRSQA-HRDFVRDATWSPLNHSLLTTVGWDHQVVHHV 328 (344)
T ss_dssp EEECC-CSSCEEEEEECSSSTTEEEEEETTSCEEEEE
T ss_pred EEEcC-CCCCEEEEEEeCCCCeEEEEEcCCCeEEEEE
Confidence 11111 123677777642 233333 4689999994
No 76
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=79.39 E-value=28 Score=29.46 Aligned_cols=18 Identities=11% Similarity=0.204 Sum_probs=13.2
Q ss_pred CeeEEEeCCcEEEEeCCC
Q 017198 8 YHTLLISNSSVFSCGSSL 25 (375)
Q Consensus 8 ~~~~~l~~g~l~~wG~n~ 25 (375)
.|+++..+++||++|-..
T Consensus 55 ~~~~~~~~~~l~v~GG~~ 72 (301)
T 2vpj_A 55 YVASVSLHDRIYVIGGYD 72 (301)
T ss_dssp SCEEEEETTEEEEECCBC
T ss_pred cccEEEECCEEEEEcCCC
Confidence 455555889999999643
No 77
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=79.30 E-value=51 Score=32.42 Aligned_cols=201 Identities=11% Similarity=0.009 Sum_probs=103.1
Q ss_pred CCEEEEecC----CceEEEEEcCCcEEEeeCCCCCcccCCCCCCceecCEEccccCCcCeEEEEcc----CCeEEEEEcC
Q 017198 50 AHVVQVSAS----ENHAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAG----LNFTGFLTIR 121 (375)
Q Consensus 50 ~~i~~i~~g----~~~~~~lt~~g~vy~~G~n~~gqlg~~~~~~~~~~p~~i~~~~~~~i~~v~~g----~~~~~~lt~~ 121 (375)
..|..|+.. ....+.-..||.|+.|-.... ...+..........|..++.. ....+..+.+
T Consensus 54 ~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~-----------~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~d 122 (753)
T 3jro_A 54 GPVWRVDWAHPKFGTILASCSYDGKVLIWKEENG-----------RWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSD 122 (753)
T ss_dssp SCEEEEEECCTTSCSEEEEEETTSCEEEEEEETT-----------EEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETT
T ss_pred CceEEEEecCCCCCCEEEEEeCCCeEEEEECCCC-----------cccccccccCCCCCeEEEEECCCCCCCEEEEEeCC
Confidence 377777764 456667778999999964431 111111111123356666654 3456677888
Q ss_pred CCEEEEeCCCCCcccCCCCCCCCcceeecCCCCCCCEEEEEeCC---------------CeEEEEECCCcEEEEeCCCCC
Q 017198 122 GHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGP---------------SYMLAVTGNGVVYSFGSGSNF 186 (375)
Q Consensus 122 g~v~~~G~n~~g~lg~~~~~~~~~p~~~~~~~~~~~i~~i~~g~---------------~~~~~lt~~g~v~~~G~n~~g 186 (375)
|.|..|-...... .....+... ...|..++... ...+.-..+|.|..|-....
T Consensus 123 g~I~vwdl~~~~~---------~~~~~~~~~--~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~- 190 (753)
T 3jro_A 123 GKVSVVEFKENGT---------TSPIIIDAH--AIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSD- 190 (753)
T ss_dssp SEEEEEECCSSSC---------CCCEEEECC--SSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETT-
T ss_pred CcEEEEEeecCCC---------cceeEeecC--CCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCC-
Confidence 9999995432211 111111111 14677776543 34555677899999954321
Q ss_pred ccCCCCCCCccCceeeeccccCCccEEEEEcCCC-----eEEEEeCCCCEEEEeCCCCCCCCCCCCCCcccCeeccCCCC
Q 017198 187 CLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGDE-----HVVALDSSGYVYTWGKGYCGALGHGDEIDKTLPEPLSSLKS 261 (375)
Q Consensus 187 qlg~~~~~~~~~p~~i~~~~~~~~~i~~i~~g~~-----~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~p~~i~~~~~ 261 (375)
......+..+......|..++.... ..+....+|.|..|-...... .............
T Consensus 191 ---------~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~-------~~~~~~~~~~~~~ 254 (753)
T 3jro_A 191 ---------AQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQG-------PWKKTLLKEEKFP 254 (753)
T ss_dssp ---------TTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSSSS-------CCBCCBSSSSCCS
T ss_pred ---------cccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCCCC-------cceeEEeccCCCC
Confidence 0111122222223346777776644 344456889999996533110 0000000000111
Q ss_pred CceEEEEe--cCCcEEEEEcCCcEEEEeCC
Q 017198 262 HLAVQVCA--RKRKTFVLVDTGSVYGFGWM 289 (375)
Q Consensus 262 ~~i~~i~~--g~~~~~~l~~~g~vy~~G~n 289 (375)
..|..++. .+...+.-..||.|+.|-.+
T Consensus 255 ~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~ 284 (753)
T 3jro_A 255 DVLWRASWSLSGNVLALSGGDNKVTLWKEN 284 (753)
T ss_dssp SCCCCEEECTTTCCEEEECSSSCEECCBCC
T ss_pred CceEEEEEcCCCCEEEEEcCCCEEEEEecC
Confidence 22333333 33444455678999999755
No 78
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=79.07 E-value=30 Score=29.67 Aligned_cols=199 Identities=8% Similarity=-0.039 Sum_probs=93.5
Q ss_pred CEEEEecCC--ceEEEEEcCCcEEEeeCCCCCcccCCCCCCceecCEEccccCCcCeEEEEcc--CCeEEEEEcCCCEEE
Q 017198 51 HVVQVSASE--NHAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAG--LNFTGFLTIRGHVHT 126 (375)
Q Consensus 51 ~i~~i~~g~--~~~~~lt~~g~vy~~G~n~~gqlg~~~~~~~~~~p~~i~~~~~~~i~~v~~g--~~~~~~lt~~g~v~~ 126 (375)
.|..++... ...+.-..||.|+.|-..... ....+.. ....|..++.. ....+....+|.|+.
T Consensus 34 ~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~------------~~~~~~~-h~~~v~~~~~~~~~~~l~s~~~dg~i~i 100 (369)
T 3zwl_B 34 PLTQVKYNKEGDLLFSCSKDSSASVWYSLNGE------------RLGTLDG-HTGTIWSIDVDCFTKYCVTGSADYSIKL 100 (369)
T ss_dssp CEEEEEECTTSCEEEEEESSSCEEEEETTTCC------------EEEEECC-CSSCEEEEEECTTSSEEEEEETTTEEEE
T ss_pred eEEEEEEcCCCCEEEEEeCCCEEEEEeCCCch------------hhhhhhh-cCCcEEEEEEcCCCCEEEEEeCCCeEEE
Confidence 677776643 344444568889999544311 1111111 12345555543 445566778899999
Q ss_pred EeCCCCCcccCCCCCCCCcceeecCCCCCCCEEEEEeCC--CeEEEEECC-----CcEEEEeCCCCCccCCCCCCCccCc
Q 017198 127 CGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGP--SYMLAVTGN-----GVVYSFGSGSNFCLGHGEQHDELQP 199 (375)
Q Consensus 127 ~G~n~~g~lg~~~~~~~~~p~~~~~~~~~~~i~~i~~g~--~~~~~lt~~-----g~v~~~G~n~~gqlg~~~~~~~~~p 199 (375)
|-...... ...+. ....+..++... .+.++...+ |.|+.|-.........-........
T Consensus 101 wd~~~~~~-----------~~~~~---~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~ 166 (369)
T 3zwl_B 101 WDVSNGQC-----------VATWK---SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPI 166 (369)
T ss_dssp EETTTCCE-----------EEEEE---CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCS
T ss_pred EECCCCcE-----------EEEee---cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeeccccccee
Confidence 95432111 11111 224566666553 344444555 8888886543211110000000000
Q ss_pred eeeeccccCCccEEEEEcC--CCeEEEEeCCCCEEEEeCCCCCCCCCCCCCCcccCeeccCCCCCceEEEEecCC--cEE
Q 017198 200 RAIQTFRRKGIHVVRVSAG--DEHVVALDSSGYVYTWGKGYCGALGHGDEIDKTLPEPLSSLKSHLAVQVCARKR--KTF 275 (375)
Q Consensus 200 ~~i~~~~~~~~~i~~i~~g--~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~p~~i~~~~~~~i~~i~~g~~--~~~ 275 (375)
..+.. ......+..++.. ....++.+.+|.|+.|-....+ .+..........|..++...+ ..+
T Consensus 167 ~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-----------~~~~~~~~~~~~v~~~~~~~~~~~l~ 234 (369)
T 3zwl_B 167 HKIIT-HEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNY-----------EYVDSIDLHEKSISDMQFSPDLTYFI 234 (369)
T ss_dssp EEEEC-CTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTT-----------EEEEEEECCSSCEEEEEECTTSSEEE
T ss_pred eeccC-CcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCc-----------EeEEEEecCCCceeEEEECCCCCEEE
Confidence 11111 0011134444333 3345555788888888643211 111111112334666655433 344
Q ss_pred EEEcCCcEEEEeC
Q 017198 276 VLVDTGSVYGFGW 288 (375)
Q Consensus 276 ~l~~~g~vy~~G~ 288 (375)
.-..+|.|+.|-.
T Consensus 235 ~~~~d~~i~v~d~ 247 (369)
T 3zwl_B 235 TSSRDTNSFLVDV 247 (369)
T ss_dssp EEETTSEEEEEET
T ss_pred EecCCceEEEEEC
Confidence 4457888998864
No 79
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=78.77 E-value=31 Score=29.69 Aligned_cols=23 Identities=0% Similarity=-0.068 Sum_probs=16.6
Q ss_pred ecCCceEEEEEcCCcEEEeeCCC
Q 017198 56 SASENHAAFVLQSGQVFTCGDNS 78 (375)
Q Consensus 56 ~~g~~~~~~lt~~g~vy~~G~n~ 78 (375)
..+.-..+++..+|++|+.+...
T Consensus 22 ~l~~v~~va~d~~G~l~v~~~~~ 44 (329)
T 3fvz_A 22 LPGQVSGVALDSKNNLVIFHRGD 44 (329)
T ss_dssp CCSCEEEEEECTTCCEEEEECTT
T ss_pred ecCCceEEEECCCCCEEEEeCCC
Confidence 34556677778889999887655
No 80
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=78.31 E-value=22 Score=31.99 Aligned_cols=98 Identities=15% Similarity=0.119 Sum_probs=59.5
Q ss_pred EEEEecCCceEEEEEcCCcEEEeeCCCCCcccCCCCCCceecCEEccccCCcCeEEEEccCCeEEEEEcCCCEEEEeCCC
Q 017198 52 VVQVSASENHAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGLNFTGFLTIRGHVHTCGSNT 131 (375)
Q Consensus 52 i~~i~~g~~~~~~lt~~g~vy~~G~n~~gqlg~~~~~~~~~~p~~i~~~~~~~i~~v~~g~~~~~~lt~~g~v~~~G~n~ 131 (375)
|.+|++ ....+++.+++.|..|--....+. ..+... ...+..+.+-....++++.+|.|++|=...
T Consensus 90 V~~l~f-d~~~L~v~~~~~l~v~dv~sl~~~------------~~~~~~-~~~v~~i~~~~p~~av~~~dG~L~v~dl~~ 155 (388)
T 1xip_A 90 VIFVCF-HGDQVLVSTRNALYSLDLEELSEF------------RTVTSF-EKPVFQLKNVNNTLVILNSVNDLSALDLRT 155 (388)
T ss_dssp EEEEEE-ETTEEEEEESSEEEEEESSSTTCE------------EEEEEC-SSCEEEEEECSSEEEEEETTSEEEEEETTT
T ss_pred eeEEEE-CCCEEEEEcCCcEEEEEchhhhcc------------Ccccee-ecceeeEEecCCCEEEEECCCCEEEEEccC
Confidence 889999 667777778899999865553211 111111 123556666555578889999999994332
Q ss_pred CCcccCCCCCCCCcceeecCCCCCCCEEEEEeCCCeEEEEECCCcEEEE
Q 017198 132 HGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGPSYMLAVTGNGVVYSF 180 (375)
Q Consensus 132 ~g~lg~~~~~~~~~p~~~~~~~~~~~i~~i~~g~~~~~~lt~~g~v~~~ 180 (375)
... ..+ . ..|..++-...-.++...+|.+..|
T Consensus 156 ~~~------------~~~---~--~~Vs~v~WSpkG~~vg~~dg~i~~~ 187 (388)
T 1xip_A 156 KST------------KQL---A--QNVTSFDVTNSQLAVLLKDRSFQSF 187 (388)
T ss_dssp CCE------------EEE---E--ESEEEEEECSSEEEEEETTSCEEEE
T ss_pred Ccc------------ccc---c--CCceEEEEcCCceEEEEcCCcEEEE
Confidence 110 011 1 4577777666555555667766666
No 81
>1zvt_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 1.70A {Escherichia coli}
Probab=77.66 E-value=30 Score=28.98 Aligned_cols=134 Identities=13% Similarity=0.095 Sum_probs=75.9
Q ss_pred CCCCCCEEEE--ecCCceEEEEEcCCcEEEeeCCCCCcccCCCCCCceecCEEccccCCcCeEEEEc--cCCeEEEEEcC
Q 017198 46 FPSAAHVVQV--SASENHAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTA--GLNFTGFLTIR 121 (375)
Q Consensus 46 ~~~~~~i~~i--~~g~~~~~~lt~~g~vy~~G~n~~gqlg~~~~~~~~~~p~~i~~~~~~~i~~v~~--g~~~~~~lt~~ 121 (375)
+.+...++.+ ....++.++.|++|++|.+-..+. ... ..........+...++.+|+.+.. ...+.+++|++
T Consensus 29 lke~D~l~~~~~~~t~~~ll~~T~~Gr~~~~~~~el---p~~-r~~G~~i~~~i~L~~~e~Iv~~~~~~~~~~lll~T~~ 104 (256)
T 1zvt_A 29 YKAGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITL---PSA-RGQGEPLTGKLTLPPGATVDHMLMESDDQKLLMASDA 104 (256)
T ss_dssp CCTTCCEEEEEEEETTSCEEEEETTSEEEEECGGGS---CCS-SSCCEEGGGTCCCCTTCCEEEEECCCTTCEEEEEBTT
T ss_pred CCCCCEEEEEEEeCCCCEEEEEeCCCeEEEEEHHHC---CCc-CCCCeEeeeeecCCCCCEEEEEEEeCCCCEEEEEeCC
Confidence 3444455443 345778999999999999876552 111 111111111233344667877766 34457888999
Q ss_pred CCEEEEeCCCCCcccCCCCCCCCcceeecCCCCCCCEEEEE---eCCCeEEEEECCCcEEEEeCCCCCccCC
Q 017198 122 GHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIA---AGPSYMLAVTGNGVVYSFGSGSNFCLGH 190 (375)
Q Consensus 122 g~v~~~G~n~~g~lg~~~~~~~~~p~~~~~~~~~~~i~~i~---~g~~~~~~lt~~g~v~~~G~n~~gqlg~ 190 (375)
|.+.-.-..++-... .....+..+.....++.+. .+.+..+++|++|.+..+-.+....+|.
T Consensus 105 G~~Kr~~~~e~~~~~-------r~G~~~i~L~~~d~lv~~~~~~~~~~~i~l~T~~G~~lrf~~~ei~~~gR 169 (256)
T 1zvt_A 105 GYGFVCTFNDLVARN-------RAGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQLSK 169 (256)
T ss_dssp SEEEEEEGGGGCCCS-------TTCEECBCCCTTCCBCCCEECCCTTCEEEEEETTSEEEEEEGGGSCBCSS
T ss_pred CeEEEeEHHHhcccC-------cCceEEEEECCCCEEEEEEEecCCCCEEEEEcCCCeEEEEEHHHCCCcCc
Confidence 988877554431111 1111222222223444432 2567899999999999988766544443
No 82
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=76.38 E-value=40 Score=29.73 Aligned_cols=194 Identities=12% Similarity=-0.005 Sum_probs=95.8
Q ss_pred CCEEEEecC--CceEEEEEcCCcEEEeeCCCCCcccCCCCCCceecCEEccccCCcCeEEEEc--cCCeEEEEEcCCCEE
Q 017198 50 AHVVQVSAS--ENHAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTA--GLNFTGFLTIRGHVH 125 (375)
Q Consensus 50 ~~i~~i~~g--~~~~~~lt~~g~vy~~G~n~~gqlg~~~~~~~~~~p~~i~~~~~~~i~~v~~--g~~~~~~lt~~g~v~ 125 (375)
..|..++.. ....+.-..||.|+.|-..... ....+.. ....|..++. .....+....||.|.
T Consensus 140 ~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~------------~~~~~~~-h~~~v~~~~~~~~~~~l~s~~~d~~v~ 206 (420)
T 3vl1_A 140 SEITKLKFFPSGEALISSSQDMQLKIWSVKDGS------------NPRTLIG-HRATVTDIAIIDRGRNVLSASLDGTIR 206 (420)
T ss_dssp SCEEEEEECTTSSEEEEEETTSEEEEEETTTCC------------CCEEEEC-CSSCEEEEEEETTTTEEEEEETTSCEE
T ss_pred CccEEEEECCCCCEEEEEeCCCeEEEEeCCCCc------------CceEEcC-CCCcEEEEEEcCCCCEEEEEcCCCcEE
Confidence 367777664 3455666678999999654411 1112221 1224555544 334555667788899
Q ss_pred EEeCCCCCcccCCCCCCCCcceeecCCCCCCCEEEEEe---------------------C--CCeEEEEECCCcEEEEeC
Q 017198 126 TCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAA---------------------G--PSYMLAVTGNGVVYSFGS 182 (375)
Q Consensus 126 ~~G~n~~g~lg~~~~~~~~~p~~~~~~~~~~~i~~i~~---------------------g--~~~~~~lt~~g~v~~~G~ 182 (375)
.|-......+..-.. .......+..++. . ..+.++-..+|.|..|-.
T Consensus 207 iwd~~~~~~~~~~~~----------~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~ 276 (420)
T 3vl1_A 207 LWECGTGTTIHTFNR----------KENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNV 276 (420)
T ss_dssp EEETTTTEEEEEECB----------TTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEET
T ss_pred EeECCCCceeEEeec----------CCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEEC
Confidence 985432211110000 0000022222222 1 224445567888999865
Q ss_pred CCCCccCCCCCCCccCceeeeccccCCccEEEEEcCCC---eEEEEeCCCCEEEEeCCCCCCCCCCCCCCcccCeeccCC
Q 017198 183 GSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGDE---HVVALDSSGYVYTWGKGYCGALGHGDEIDKTLPEPLSSL 259 (375)
Q Consensus 183 n~~gqlg~~~~~~~~~p~~i~~~~~~~~~i~~i~~g~~---~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~p~~i~~~ 259 (375)
.... .+..+. ......|..++.... ..+.-..+|.|+.|-.....+ ....+...
T Consensus 277 ~~~~-----------~~~~~~--~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~----------~~~~~~~~ 333 (420)
T 3vl1_A 277 FSKE-----------QTIQLP--SKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPEC----------PVGEFLIN 333 (420)
T ss_dssp TTCC-----------EEEEEC--CTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTS----------CSEEEEES
T ss_pred CCCc-----------eeEEcc--cccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcC----------chhhhhcc
Confidence 3211 111111 112235667766544 555567889999996532111 01122222
Q ss_pred CCCceEEEEecCCcEEEE-EcCCcEEEEeCC
Q 017198 260 KSHLAVQVCARKRKTFVL-VDTGSVYGFGWM 289 (375)
Q Consensus 260 ~~~~i~~i~~g~~~~~~l-~~~g~vy~~G~n 289 (375)
....+..+...+...++. ..||.|..|-..
T Consensus 334 ~~~~v~~~~~~~~~~l~s~~~d~~v~iw~~~ 364 (420)
T 3vl1_A 334 EGTPINNVYFAAGALFVSSGFDTSIKLDIIS 364 (420)
T ss_dssp TTSCEEEEEEETTEEEEEETTTEEEEEEEEC
T ss_pred CCCCceEEEeCCCCEEEEecCCccEEEEecc
Confidence 334566665555544443 357889998744
No 83
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=76.21 E-value=41 Score=29.70 Aligned_cols=152 Identities=13% Similarity=0.050 Sum_probs=80.3
Q ss_pred EecCCceEEEE---EcCCcEEEeeCCCCCcccCCCCCCceecCEEccccCCcCeEEEEc---cCCeEEEEEcCCCEEEEe
Q 017198 55 VSASENHAAFV---LQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTA---GLNFTGFLTIRGHVHTCG 128 (375)
Q Consensus 55 i~~g~~~~~~l---t~~g~vy~~G~n~~gqlg~~~~~~~~~~p~~i~~~~~~~i~~v~~---g~~~~~~lt~~g~v~~~G 128 (375)
+++...+..++ ..+|.|++|-....+.+... ...+. -....|..++. .....+.-..||.|..|-
T Consensus 40 ~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~--------~~~~~-~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~ 110 (402)
T 2aq5_A 40 CAVNPKFMALICEASGGGAFLVLPLGKTGRVDKN--------VPLVC-GHTAPVLDIAWCPHNDNVIASGSEDCTVMVWE 110 (402)
T ss_dssp EEECSSEEEEEBCCSSSCCEEEEETTCCEECCTT--------CCCBC-CCSSCEEEEEECTTCTTEEEEEETTSEEEEEE
T ss_pred EEECCCeEEEEEEEcCCCEEEEEECccCCCCCCC--------CceEe-cCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEE
Confidence 55566665555 34799999976654432100 00011 11235666665 344555667789999996
Q ss_pred CCCCCcccCCCCCCCCcc-eeecCCCCCCCEEEEEeCCC---eEEEEECCCcEEEEeCCCCCccCCCCCCCccCceeeec
Q 017198 129 SNTHGQLGHGDTLDRPTP-KSIAPLEEVGSVVQIAAGPS---YMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQT 204 (375)
Q Consensus 129 ~n~~g~lg~~~~~~~~~p-~~~~~~~~~~~i~~i~~g~~---~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~p~~i~~ 204 (375)
....+... ....+ ..+... ...|..++.... ..+.-..+|.|+.|-.... ..+..
T Consensus 111 ~~~~~~~~-----~~~~~~~~~~~h--~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~--------------~~~~~ 169 (402)
T 2aq5_A 111 IPDGGLVL-----PLREPVITLEGH--TKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTG--------------AAVLT 169 (402)
T ss_dssp CCTTCCSS-----CBCSCSEEEECC--SSCEEEEEECSSBTTEEEEEETTSCEEEEETTTT--------------EEEEE
T ss_pred ccCCCCcc-----ccCCceEEecCC--CCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCC--------------CccEE
Confidence 54322110 00011 112111 156888877643 4455578899999965321 11222
Q ss_pred c--ccCCccEEEEEcC--CCeEEEEeCCCCEEEEeC
Q 017198 205 F--RRKGIHVVRVSAG--DEHVVALDSSGYVYTWGK 236 (375)
Q Consensus 205 ~--~~~~~~i~~i~~g--~~~~~~lt~~g~v~~~G~ 236 (375)
+ ......|..++.. ....+.-..+|.|+.|-.
T Consensus 170 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~ 205 (402)
T 2aq5_A 170 LGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEP 205 (402)
T ss_dssp ECTTTCCSCEEEEEECTTSSCEEEEETTSEEEEEET
T ss_pred EecCCCCCceEEEEECCCCCEEEEEecCCcEEEEeC
Confidence 2 1223356666654 334455568889999964
No 84
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=74.92 E-value=17 Score=31.31 Aligned_cols=17 Identities=18% Similarity=0.266 Sum_probs=12.1
Q ss_pred eEEEEEcCCCEEEEeCC
Q 017198 114 FTGFLTIRGHVHTCGSN 130 (375)
Q Consensus 114 ~~~~lt~~g~v~~~G~n 130 (375)
+..++..+++||++|-.
T Consensus 49 ~~~~~~~~~~lyv~GG~ 65 (318)
T 2woz_A 49 HSSIVTQQNQVYVVGGL 65 (318)
T ss_dssp EEEEECSSSCEEEEESS
T ss_pred ceEEEEECCEEEEECCc
Confidence 34445568999999973
No 85
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=73.75 E-value=38 Score=28.14 Aligned_cols=14 Identities=7% Similarity=0.014 Sum_probs=8.3
Q ss_pred EEEEEcCCcEEEEe
Q 017198 274 TFVLVDTGSVYGFG 287 (375)
Q Consensus 274 ~~~l~~~g~vy~~G 287 (375)
.++++.+|++|.-.
T Consensus 211 ~i~~d~~G~l~v~~ 224 (286)
T 1q7f_A 211 GVGINSNGEILIAD 224 (286)
T ss_dssp EEEECTTCCEEEEE
T ss_pred EEEECCCCCEEEEe
Confidence 45556666666554
No 86
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=73.05 E-value=49 Score=29.19 Aligned_cols=203 Identities=11% Similarity=-0.011 Sum_probs=87.9
Q ss_pred EEEEecCC--ceEEEEEcCCcEEEeeCCCCCcccCCCCCCceecCEEccccCCcCeEEEEc--cCCeEEEEEcCCCEEEE
Q 017198 52 VVQVSASE--NHAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTA--GLNFTGFLTIRGHVHTC 127 (375)
Q Consensus 52 i~~i~~g~--~~~~~lt~~g~vy~~G~n~~gqlg~~~~~~~~~~p~~i~~~~~~~i~~v~~--g~~~~~~lt~~g~v~~~ 127 (375)
|..++... ...+.-..||.|..|-..... ....+.. ....|..++. .....+.-..|+.|..|
T Consensus 126 v~~v~~s~dg~~l~s~~~d~~i~iwd~~~~~------------~~~~~~~-h~~~v~~~~~~p~~~~l~s~s~d~~v~iw 192 (393)
T 1erj_A 126 IRSVCFSPDGKFLATGAEDRLIRIWDIENRK------------IVMILQG-HEQDIYSLDYFPSGDKLVSGSGDRTVRIW 192 (393)
T ss_dssp EEEEEECTTSSEEEEEETTSCEEEEETTTTE------------EEEEECC-CSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred EEEEEECCCCCEEEEEcCCCeEEEEECCCCc------------EEEEEcc-CCCCEEEEEEcCCCCEEEEecCCCcEEEE
Confidence 55555543 344444567888888543310 0011111 1224555543 23445556678888888
Q ss_pred eCCCCCcccCCCCCCCCcceeecCCCCCCCEEEEEeCC---CeEEEEECCCcEEEEeCCCCCccCCCCCCCccCceeeec
Q 017198 128 GSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGP---SYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQT 204 (375)
Q Consensus 128 G~n~~g~lg~~~~~~~~~p~~~~~~~~~~~i~~i~~g~---~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~p~~i~~ 204 (375)
-..... ....+. ....+..++... .+.+.-..+|.|..|-......+.. .......
T Consensus 193 d~~~~~-----------~~~~~~---~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~-------~~~~~~~ 251 (393)
T 1erj_A 193 DLRTGQ-----------CSLTLS---IEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVER-------LDSENES 251 (393)
T ss_dssp ETTTTE-----------EEEEEE---CSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEE-------EC-----
T ss_pred ECCCCe-----------eEEEEE---cCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEe-------ecccccC
Confidence 432210 011111 114566666543 3445556789999996532110000 0000000
Q ss_pred cccCCccEEEEEcCC--CeEEEEeCCCCEEEEeCCCCCCCCCCCCCCcccCeeccCCCCCceEEEEecC--CcEEEEEcC
Q 017198 205 FRRKGIHVVRVSAGD--EHVVALDSSGYVYTWGKGYCGALGHGDEIDKTLPEPLSSLKSHLAVQVCARK--RKTFVLVDT 280 (375)
Q Consensus 205 ~~~~~~~i~~i~~g~--~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~p~~i~~~~~~~i~~i~~g~--~~~~~l~~~ 280 (375)
.......|..++... ...+.-..||.|..|-............................|..++... .+.+.-..|
T Consensus 252 ~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D 331 (393)
T 1erj_A 252 GTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKD 331 (393)
T ss_dssp -CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETT
T ss_pred CCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCC
Confidence 011222466665543 3444456788899986532211110000000000000011122355555443 334444578
Q ss_pred CcEEEEeC
Q 017198 281 GSVYGFGW 288 (375)
Q Consensus 281 g~vy~~G~ 288 (375)
|.|+.|-.
T Consensus 332 ~~v~iwd~ 339 (393)
T 1erj_A 332 RGVLFWDK 339 (393)
T ss_dssp SEEEEEET
T ss_pred CeEEEEEC
Confidence 88999864
No 87
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=72.67 E-value=53 Score=29.41 Aligned_cols=165 Identities=8% Similarity=0.021 Sum_probs=82.9
Q ss_pred CCEEEEecC---CceEEEEEcCCcEEEeeCCCCCcccCCCCCCceecCEEccccCCcCeEEEEccC---CeEEEEEcCCC
Q 017198 50 AHVVQVSAS---ENHAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGL---NFTGFLTIRGH 123 (375)
Q Consensus 50 ~~i~~i~~g---~~~~~~lt~~g~vy~~G~n~~gqlg~~~~~~~~~~p~~i~~~~~~~i~~v~~g~---~~~~~lt~~g~ 123 (375)
..|..|+.. ....+.-..||.|+.|-...... ......+. .....|..++... ...+.-..+|.
T Consensus 232 ~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~---------~~~~~~~~-~~~~~v~~i~~~p~~~~~l~tg~~dg~ 301 (430)
T 2xyi_A 232 AVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNT---------SKPSHTVD-AHTAEVNCLSFNPYSEFILATGSADKT 301 (430)
T ss_dssp SCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCS---------SSCSEEEE-CCSSCEEEEEECSSCTTEEEEEETTSE
T ss_pred CCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCC---------CcceeEee-cCCCCeEEEEeCCCCCCEEEEEeCCCe
Confidence 367777763 44555566789999996654210 00111111 1223456665532 23445567888
Q ss_pred EEEEeCCCCCcccCCCCCCCCcceeecCCCCCCCEEEEEeCC---CeEEEEECCCcEEEEeCCCCCccCCCCCCCccCce
Q 017198 124 VHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGP---SYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPR 200 (375)
Q Consensus 124 v~~~G~n~~g~lg~~~~~~~~~p~~~~~~~~~~~i~~i~~g~---~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~p~ 200 (375)
|..|-.....+ ....+.. ....|..++... ...+.-..+|.|..|-....+............|.
T Consensus 302 v~vwd~~~~~~----------~~~~~~~--h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~ 369 (430)
T 2xyi_A 302 VALWDLRNLKL----------KLHSFES--HKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPE 369 (430)
T ss_dssp EEEEETTCTTS----------CSEEEEC--CSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTT
T ss_pred EEEEeCCCCCC----------CeEEeec--CCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCccccccCCcc
Confidence 99986543211 0111111 125688887754 33455567899999976442211000000000123
Q ss_pred eeeccccCCccEEEEEcCCC---eEEEEeCCCCEEEEeC
Q 017198 201 AIQTFRRKGIHVVRVSAGDE---HVVALDSSGYVYTWGK 236 (375)
Q Consensus 201 ~i~~~~~~~~~i~~i~~g~~---~~~~lt~~g~v~~~G~ 236 (375)
.+.........|..++-... ..+....+|.|..|-.
T Consensus 370 ~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~ 408 (430)
T 2xyi_A 370 LLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQM 408 (430)
T ss_dssp EEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEE
T ss_pred eEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEc
Confidence 33333323335766665443 4445577888888864
No 88
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=71.59 E-value=53 Score=28.92 Aligned_cols=154 Identities=12% Similarity=0.081 Sum_probs=80.2
Q ss_pred EEccCCeEEEE---EcCCCEEEEeCCCCCcccCCCCCCCCcceeecCCCCCCCEEEEEeCC---CeEEEEECCCcEEEEe
Q 017198 108 VTAGLNFTGFL---TIRGHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGP---SYMLAVTGNGVVYSFG 181 (375)
Q Consensus 108 v~~g~~~~~~l---t~~g~v~~~G~n~~g~lg~~~~~~~~~p~~~~~~~~~~~i~~i~~g~---~~~~~lt~~g~v~~~G 181 (375)
+++...+..++ ..+|.|++|-....+.+.. ..+. +.. ....|..++... ...+.-..+|.|..|-
T Consensus 40 ~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~------~~~~-~~~--h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~ 110 (402)
T 2aq5_A 40 CAVNPKFMALICEASGGGAFLVLPLGKTGRVDK------NVPL-VCG--HTAPVLDIAWCPHNDNVIASGSEDCTVMVWE 110 (402)
T ss_dssp EEECSSEEEEEBCCSSSCCEEEEETTCCEECCT------TCCC-BCC--CSSCEEEEEECTTCTTEEEEEETTSEEEEEE
T ss_pred EEECCCeEEEEEEEcCCCEEEEEECccCCCCCC------CCce-Eec--CCCCEEEEEeCCCCCCEEEEEeCCCeEEEEE
Confidence 45555554444 4579999997654433210 0111 111 115688888743 4555557889999997
Q ss_pred CCCCCccCCCCCCCccCceeeeccccCCccEEEEEcCCC---eEEEEeCCCCEEEEeCCCCCCCCCCCCCCcccCeecc-
Q 017198 182 SGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGDE---HVVALDSSGYVYTWGKGYCGALGHGDEIDKTLPEPLS- 257 (375)
Q Consensus 182 ~n~~gqlg~~~~~~~~~p~~i~~~~~~~~~i~~i~~g~~---~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~p~~i~- 257 (375)
........ ....+ +..+......|..++.... ..+.-..+|.|+.|-..... ....+.
T Consensus 111 ~~~~~~~~-----~~~~~--~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~-----------~~~~~~~ 172 (402)
T 2aq5_A 111 IPDGGLVL-----PLREP--VITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGA-----------AVLTLGP 172 (402)
T ss_dssp CCTTCCSS-----CBCSC--SEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTE-----------EEEEECT
T ss_pred ccCCCCcc-----ccCCc--eEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCC-----------ccEEEec
Confidence 64432110 01111 1122223336777766544 34445788999999643210 011110
Q ss_pred CCCCCceEEEEec--CCcEEEEEcCCcEEEEeC
Q 017198 258 SLKSHLAVQVCAR--KRKTFVLVDTGSVYGFGW 288 (375)
Q Consensus 258 ~~~~~~i~~i~~g--~~~~~~l~~~g~vy~~G~ 288 (375)
......|..++.. ....+.-..||.|+.|--
T Consensus 173 ~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~ 205 (402)
T 2aq5_A 173 DVHPDTIYSVDWSRDGALICTSCRDKRVRVIEP 205 (402)
T ss_dssp TTCCSCEEEEEECTTSSCEEEEETTSEEEEEET
T ss_pred CCCCCceEEEEECCCCCEEEEEecCCcEEEEeC
Confidence 1223356666654 334455567889999974
No 89
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=71.51 E-value=50 Score=28.56 Aligned_cols=217 Identities=12% Similarity=0.063 Sum_probs=116.8
Q ss_pred eeecCCeeEEE-eCCcEEEEeCCCCCccCCCCCCCeeeeeeeecCCCCCCEEEEecC-----CceEEEEEcCCcEEEeeC
Q 017198 3 ITTGRYHTLLI-SNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSAS-----ENHAAFVLQSGQVFTCGD 76 (375)
Q Consensus 3 i~~G~~~~~~l-~~g~l~~wG~n~~g~Lg~~~~~~~~~~~~~~~~~~~~~i~~i~~g-----~~~~~~lt~~g~vy~~G~ 76 (375)
++.+..+.+++ +.|++|..-...--..+....-. .....+.+.+...|+.+... ..+.+++|++|.++..-.
T Consensus 54 ~~~~~~~ll~~T~~G~~~~~~~~~ip~~~r~~~G~--~i~~~l~l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l 131 (312)
T 1suu_A 54 CVNTHDYLFMISNEGKLYLINAYEIKDSSRASKGQ--NISELINLGDQEEILTIKNSKDLTDDAYLLLTTASGKIARFES 131 (312)
T ss_dssp EEETTCEEEEEETTSEEEEEEGGGSCC-------C--BGGGTSCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEG
T ss_pred EECCCCEEEEEECCCeEEEEEHHHCCCCCccCCCc--ChhhccCCCCCCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEH
Confidence 34455666777 89999888765321111111111 01123445566677776553 456899999999998865
Q ss_pred CCCCcccCCCCCCceecCEE-ccccCCcCeEEEE--ccCCeEEEEEcCCCEEEEeCCCCCcccCCCCCCCCcceeecCCC
Q 017198 77 NSSFCCGHRDTNRPIFRPRL-VEALKGVPCKQVT--AGLNFTGFLTIRGHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLE 153 (375)
Q Consensus 77 n~~gqlg~~~~~~~~~~p~~-i~~~~~~~i~~v~--~g~~~~~~lt~~g~v~~~G~n~~g~lg~~~~~~~~~p~~~~~~~ 153 (375)
.++-.. . ..... +...++..++.+. .+..+.+++|++|.+..+-.++.-..|.. ..-+....+.
T Consensus 132 ~~~~~~---r-----~~G~~~i~L~~~d~lv~~~~~~~~~~i~l~T~~G~~~r~~~~ev~~~gR~-----~~Gv~~i~L~ 198 (312)
T 1suu_A 132 TDFKAV---K-----SRGVIVIKLNDKDFVTSAEIVFKDEKVICLSKKGSAFIFNSRDVRLTNRG-----TQGVCGMKLK 198 (312)
T ss_dssp GGGCC------------CEECBCCCTTCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCTT-----BCCEECCCCC
T ss_pred HHhhcc---C-----CCcEEEEecCCCCEEEEEEEeCCCCEEEEEeCCCcEEEEEHHHccccCCC-----CCCeEeEEeC
Confidence 553110 0 01111 1222344555443 35667889999999998876654333322 1223333343
Q ss_pred CCCCEEEEEe--CCCeEEEEECCCcEEEEeCCCCCccCCCCCCCccCceeeeccc-cCCccEEE--EEcCCCeEEEEeCC
Q 017198 154 EVGSVVQIAA--GPSYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFR-RKGIHVVR--VSAGDEHVVALDSS 228 (375)
Q Consensus 154 ~~~~i~~i~~--g~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~p~~i~~~~-~~~~~i~~--i~~g~~~~~~lt~~ 228 (375)
..+.++.+.. ...+.++++++|.+...-...+...+.+..-. .+..+. .....+.. ........++++++
T Consensus 199 ~~d~vv~~~~v~~~~~l~~vt~~G~~kr~~~~e~~~~~R~~kGv-----~~~~~~k~~~~~lv~~~~~~~~~~l~~~t~~ 273 (312)
T 1suu_A 199 EGDLFVKVLSVKENPYLLIVSENGYGKRLNMSKISELKRGATGY-----TSYKKSDKKAGSVVDAIAVSEDDEILLVSKR 273 (312)
T ss_dssp TTCCEEEEEECTTCSEEEEEETTSEEEEEEGGGSCBCCTTCCCE-----ECSCTTCTTTCSEEEEEEECTTCEEEEEETT
T ss_pred CCCEEEEEEEECCCCeEEEEECCCceEEEEHHHhcccCCCCCCE-----EeeEccCCCCCeEEEEEEeCCCCEEEEEeCC
Confidence 4467777654 34568888999988888776664444332211 111111 11112332 22355667788888
Q ss_pred CCEEEEeCCCC
Q 017198 229 GYVYTWGKGYC 239 (375)
Q Consensus 229 g~v~~~G~n~~ 239 (375)
|++.-.-.+..
T Consensus 274 g~~~r~~~~~i 284 (312)
T 1suu_A 274 SKALRTVAGKV 284 (312)
T ss_dssp CEEEEEEGGGS
T ss_pred CeEEEEEcccC
Confidence 87766554443
No 90
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=69.74 E-value=61 Score=28.84 Aligned_cols=157 Identities=15% Similarity=0.104 Sum_probs=77.4
Q ss_pred CCEEEEecCC--ceEEEEEcCCcEEEeeCC--CCCcccCCCCCCceecCEEccc----c--CCcCeEEEEc----cCCeE
Q 017198 50 AHVVQVSASE--NHAAFVLQSGQVFTCGDN--SSFCCGHRDTNRPIFRPRLVEA----L--KGVPCKQVTA----GLNFT 115 (375)
Q Consensus 50 ~~i~~i~~g~--~~~~~lt~~g~vy~~G~n--~~gqlg~~~~~~~~~~p~~i~~----~--~~~~i~~v~~----g~~~~ 115 (375)
..|..|+... ...+.-..||.|..|-.. ..+++- .......+.. . ....+..+.. .....
T Consensus 112 ~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~------~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l 185 (437)
T 3gre_A 112 STVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEV------KFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLL 185 (437)
T ss_dssp SCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEE------EEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEE
T ss_pred CCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCcee------eccccceeEEEEccCcccccCceEEEEEEcCCCCEE
Confidence 3677766643 455666678999888542 111110 0001011110 0 2233444442 24455
Q ss_pred EEEEcCCCEEEEeCCCCCcccCCCCCCCCcceeecCCCCCCCEEEEEeCC--CeEEEEECCCcEEEEeCCCCCccCCCCC
Q 017198 116 GFLTIRGHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGP--SYMLAVTGNGVVYSFGSGSNFCLGHGEQ 193 (375)
Q Consensus 116 ~~lt~~g~v~~~G~n~~g~lg~~~~~~~~~p~~~~~~~~~~~i~~i~~g~--~~~~~lt~~g~v~~~G~n~~gqlg~~~~ 193 (375)
+.-+.+|.|+.|-..... ....+........|..++... .+.+.-..+|.|..|-...
T Consensus 186 ~~~~~d~~i~iwd~~~~~-----------~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~--------- 245 (437)
T 3gre_A 186 VALTNLSRVIIFDIRTLE-----------RLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRF--------- 245 (437)
T ss_dssp EEEETTSEEEEEETTTCC-----------EEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTT---------
T ss_pred EEEeCCCeEEEEeCCCCe-----------eeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCC---------
Confidence 667788999998543211 111122111125788887753 4445557889999996532
Q ss_pred CCccCceeeeccc-cCCccEEEEEcC----CC--eEEEEeCCCCEEEEeCC
Q 017198 194 HDELQPRAIQTFR-RKGIHVVRVSAG----DE--HVVALDSSGYVYTWGKG 237 (375)
Q Consensus 194 ~~~~~p~~i~~~~-~~~~~i~~i~~g----~~--~~~~lt~~g~v~~~G~n 237 (375)
...+..+. .....|..++.. .+ ..+.-..+|.|..|-..
T Consensus 246 -----~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~ 291 (437)
T 3gre_A 246 -----NVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFV 291 (437)
T ss_dssp -----TEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETT
T ss_pred -----ccEEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcC
Confidence 11122111 122256666332 22 23333567888888653
No 91
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}
Probab=69.71 E-value=61 Score=28.86 Aligned_cols=222 Identities=16% Similarity=0.078 Sum_probs=113.9
Q ss_pred eecCCeeEEE-eCCcEEEEeCCCCCccCCCCCCCeeeeeeeecCCCCCCEEEEecC-----CceEEEEEcCCcEEEeeCC
Q 017198 4 TTGRYHTLLI-SNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSAS-----ENHAAFVLQSGQVFTCGDN 77 (375)
Q Consensus 4 ~~G~~~~~~l-~~g~l~~wG~n~~g~Lg~~~~~~~~~~~~~~~~~~~~~i~~i~~g-----~~~~~~lt~~g~vy~~G~n 77 (375)
+.+..+.+++ +.|++|-+-...--..|....-. .....+.+....+|+.+..- ..+.+++|++|.+.-.-..
T Consensus 54 ~~t~d~ll~fT~~G~~~~~~~~eip~~~r~a~G~--~i~~ll~L~~~e~Iv~~~~~~~~~~~~~ll~~T~~G~vKrt~l~ 131 (370)
T 3l6v_A 54 VNTHDTLLTFTSSGKVFWLPVHQLPEAGSNARGR--PIINWIPLESGERVQAVLPVREYADNRYVFMATRNGTVKKTPLS 131 (370)
T ss_dssp ECTTCEEEEEETTSEEEEEEGGGSCBCCTTSCCE--EGGGSCCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGG
T ss_pred ecCCCEEEEEeCCCeEEEEEHHHCcCCCcccCCc--CHhhccCCCCCCEEEEEEEeccCCCCcEEEEEeCCCeEEEeEHH
Confidence 3444556666 89999988765422222211111 01112345556688877652 3578999999998877655
Q ss_pred CCCcccCCCCCCceecCEEccccCCcCeEE--EEccCCeEEEEEcCCCEEEEeCCCCCcccCCCCCCCCcceeecCCCCC
Q 017198 78 SSFCCGHRDTNRPIFRPRLVEALKGVPCKQ--VTAGLNFTGFLTIRGHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEV 155 (375)
Q Consensus 78 ~~gqlg~~~~~~~~~~p~~i~~~~~~~i~~--v~~g~~~~~~lt~~g~v~~~G~n~~g~lg~~~~~~~~~p~~~~~~~~~ 155 (375)
++-... .. --..+...++..++. +..+....+++|++|++.-+-.+.....|.... -+....+...
T Consensus 132 e~~~~~---~~----G~~ai~L~~~d~lv~v~~~~~~~~i~l~T~~G~~irf~~~~v~~~gR~a~-----GV~~i~L~~~ 199 (370)
T 3l6v_A 132 EFAFRL---AR----GKIAINLDEGDALVGVALTDGDRDVLLFASNGKTVRFGESTVRSMGRTAT-----GVRGIRLAKG 199 (370)
T ss_dssp GGCSCC---TT----CEESSCCCTTCCEEEEEEECSCCEEEEEETTSEEEEEEGGGSCBCCTTCC-----CEECCCCCTT
T ss_pred Hhhccc---CC----ceEEEEeCCCCEEEEEEEeCCCceEEEEeCCCeEEEEEccccCccCCCCC-----CeeeEEeCCC
Confidence 432111 00 001111112333333 334667899999999999886655444443321 1222233333
Q ss_pred CCEEEEEeC-------------------------------------CCeEEEEECCCcEEEEeCCCCCccCCCCCCCccC
Q 017198 156 GSVVQIAAG-------------------------------------PSYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQ 198 (375)
Q Consensus 156 ~~i~~i~~g-------------------------------------~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~ 198 (375)
+.|+.+..- ..+.+.+|++|-..-.-...+...+.+..-....
T Consensus 200 d~Vv~~~~~~~~~~~~~~~~~~~~~~~~~t~~g~~~~~~~~~~~~~~~~il~vTe~G~gKrt~~~e~~~~~Rg~kGv~~~ 279 (370)
T 3l6v_A 200 EEVVSLIVSERAGGVEDEVEDESAEEVVETTDGAEPAVIDVADNGDVAYILTATENGYGKRTPLAEYPRKGRGTQGVIGI 279 (370)
T ss_dssp CCEEEEEEECCC-----------------------------------CEEEEEETTSEEEEEEGGGSCCBCTTSCCEESS
T ss_pred CEEEEEEEeccccccccccccccccccccccccccccccccccccCCceEEEeeCCCCEEEEEHHHhcccccCCcceEEE
Confidence 455544332 2356777777766655555544433332211110
Q ss_pred ceeeeccccCCccEEEE--EcCCCeEEEEeCCCCEEEEeCCCCCCCCC
Q 017198 199 PRAIQTFRRKGIHVVRV--SAGDEHVVALDSSGYVYTWGKGYCGALGH 244 (375)
Q Consensus 199 p~~i~~~~~~~~~i~~i--~~g~~~~~~lt~~g~v~~~G~n~~gqlg~ 244 (375)
.+....-.++.+ .......+++|+.|++.-.-.+..-..|.
T Consensus 280 -----k~~~~~g~lv~~~~v~~~d~i~liT~~G~~iR~~v~~i~~~gR 322 (370)
T 3l6v_A 280 -----QTTERNGKLVRAVLLGSTDEVMLISDGGTLVRTRGSEISRVGR 322 (370)
T ss_dssp -----CCCTTTCSEEEEEEECTTCEEEEEETTCCEEEEEGGGSCBCCS
T ss_pred -----EecCCCCcEEEEEEeCCCceEEEEcCCCeEEEeeHhhCCccCC
Confidence 011111123332 23456888999999998886655444443
No 92
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=69.55 E-value=20 Score=30.44 Aligned_cols=17 Identities=12% Similarity=0.292 Sum_probs=12.5
Q ss_pred CeeEEEeCCcEEEEeCC
Q 017198 8 YHTLLISNSSVFSCGSS 24 (375)
Q Consensus 8 ~~~~~l~~g~l~~wG~n 24 (375)
.|+++.-+++||++|-.
T Consensus 94 ~~~~~~~~~~iyv~GG~ 110 (306)
T 3ii7_A 94 SLAACAAEGKIYTSGGS 110 (306)
T ss_dssp SCEEEEETTEEEEECCB
T ss_pred ceeEEEECCEEEEECCC
Confidence 45555588999999964
No 93
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=69.41 E-value=62 Score=28.79 Aligned_cols=110 Identities=7% Similarity=0.011 Sum_probs=56.0
Q ss_pred CEEEEec----CCceEEEEEcCCcEEEeeCCCCCcccCCCCCCceecCEEcccc-CCcCeEEEEc--cCCeEEEEEcCCC
Q 017198 51 HVVQVSA----SENHAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEAL-KGVPCKQVTA--GLNFTGFLTIRGH 123 (375)
Q Consensus 51 ~i~~i~~----g~~~~~~lt~~g~vy~~G~n~~gqlg~~~~~~~~~~p~~i~~~-~~~~i~~v~~--g~~~~~~lt~~g~ 123 (375)
.+..+.. .....+.-+.||.|+.|-..... ....+... ....|..++. .....+.-+.||.
T Consensus 170 ~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~------------~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~ 237 (437)
T 3gre_A 170 YAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLE------------RLQIIENSPRHGAVSSICIDEECCVLILGTTRGI 237 (437)
T ss_dssp CEEEEEEEECSSCEEEEEEETTSEEEEEETTTCC------------EEEEEECCGGGCCEEEEEECTTSCEEEEEETTSC
T ss_pred CceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCe------------eeEEEccCCCCCceEEEEECCCCCEEEEEcCCCe
Confidence 5555552 24566666778899998654311 01111110 1235666655 3344555678899
Q ss_pred EEEEeCCCCCcccCCCCCCCCcceeecCCCCCCCEEEEEeCCC------eEEEEECCCcEEEEeCCC
Q 017198 124 VHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGPS------YMLAVTGNGVVYSFGSGS 184 (375)
Q Consensus 124 v~~~G~n~~g~lg~~~~~~~~~p~~~~~~~~~~~i~~i~~g~~------~~~~lt~~g~v~~~G~n~ 184 (375)
|..|-.... .+.....+.....|..++.... +.+.-..+|.|..|-...
T Consensus 238 i~iwd~~~~------------~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~ 292 (437)
T 3gre_A 238 IDIWDIRFN------------VLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVK 292 (437)
T ss_dssp EEEEETTTT------------EEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTT
T ss_pred EEEEEcCCc------------cEEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCC
Confidence 999954321 1111111112245666644322 333345678899997643
No 94
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=68.63 E-value=57 Score=28.10 Aligned_cols=232 Identities=12% Similarity=0.093 Sum_probs=118.5
Q ss_pred CCCCCCEEE--EecCCceEEEEEcCCcEEEeeCCCCCcccCCCCCCceecCEEccccCCcCeEEEEc-----cCCeEEEE
Q 017198 46 FPSAAHVVQ--VSASENHAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTA-----GLNFTGFL 118 (375)
Q Consensus 46 ~~~~~~i~~--i~~g~~~~~~lt~~g~vy~~G~n~~gqlg~~~~~~~~~~p~~i~~~~~~~i~~v~~-----g~~~~~~l 118 (375)
+.+...+.. ++...++.++.|+.|++|.+-..+--..+..... ......+...++.+|+.+.. ...+.+++
T Consensus 38 ~ke~D~l~~~~~~~~~~~ll~fT~~G~~~~~~~~elp~~~~~a~G--~~i~~~l~l~~~e~i~~~~~~~~~~~~~~ll~~ 115 (307)
T 1zi0_A 38 IKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQLPEATRGARG--RPIVNLLPLEQDERITAILPVTEFEEGVKVFMA 115 (307)
T ss_dssp ----CCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCCCCSSSCC--EEGGGTSCCCTTCCEEEEEEESCCCTTCEEEEE
T ss_pred eCCCCEEEEEEEECCCCEEEEEECCCEEEEEEhhHCcCCCCCCCC--eEhhhccCCCCCCEEEEEEEeccCCCCcEEEEE
Confidence 334444444 4556888999999999999876552222211111 11112223334666776654 23457888
Q ss_pred EcCCCEEEEeCCCCCcccCCCCCCCCcceeecCCCCCCCEEEEE--eCCCeEEEEECCCcEEEEeCCCCCccCCCCCCCc
Q 017198 119 TIRGHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIA--AGPSYMLAVTGNGVVYSFGSGSNFCLGHGEQHDE 196 (375)
Q Consensus 119 t~~g~v~~~G~n~~g~lg~~~~~~~~~p~~~~~~~~~~~i~~i~--~g~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~ 196 (375)
|++|.+--.-..++.... ........+.....++.+. .+.+..+++|++|+++.+-......+|....
T Consensus 116 T~~G~~Krt~l~e~~~~~-------r~G~~~i~l~~~d~lv~~~~~~~~~~i~l~T~~G~~irf~~~~v~~~gr~a~--- 185 (307)
T 1zi0_A 116 TANGTVKKTVLTEFNRLR-------TAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTT--- 185 (307)
T ss_dssp ETTSEEEEEEGGGGTTCC-------TTCEESSCCCTTCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCTTCC---
T ss_pred eCCCeEEEEEHHHhhccc-------cCCeEEEEECCCCEEEEEEEeCCCCEEEEECCCCcEEEEEHHHcCccCCCCC---
Confidence 999988776443322111 1122222222225565543 3567889999999999997765544443211
Q ss_pred cCceeeeccccCCccEEEEEcC--CCeEEEEeCCCCEEEEeCCCCCCCCCCCCCCcccCeeccCCCCCceEEEEe--cCC
Q 017198 197 LQPRAIQTFRRKGIHVVRVSAG--DEHVVALDSSGYVYTWGKGYCGALGHGDEIDKTLPEPLSSLKSHLAVQVCA--RKR 272 (375)
Q Consensus 197 ~~p~~i~~~~~~~~~i~~i~~g--~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~p~~i~~~~~~~i~~i~~--g~~ 272 (375)
-.+...+. .+..|+.+..- ....+++|++|.+--.-...+-.-+.+... ...+. +. ..+..++.+.. ..+
T Consensus 186 --Gv~~i~L~-~~d~Vv~~~~~~~~~~ll~~T~~G~~Kr~~~~e~~~~~Rg~kG-~~~~~-~~-~~~~~lv~~~~v~~~~ 259 (307)
T 1zi0_A 186 --GVRGIRLG-EGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKG-VISIK-VT-ERNGLVVGAVQVDDCD 259 (307)
T ss_dssp --CEECCCCC-TTCCEEEEECCCSSCEEEEEETTSEEEEECGGGSCCCCTTSCC-EESSC-CC-TTTCSEEEEEEECTTC
T ss_pred --CeEeEEeC-CCCEEEEEEEecCCCEEEEEEcCCceEEEEHHHhccCCCCCCC-EEeeE-ec-CCCCeEEEEEEeCCCc
Confidence 11222222 23356666542 234667788886554433333211221111 11111 11 11234444333 456
Q ss_pred cEEEEEcCCcEEEEeCCCCCCCC
Q 017198 273 KTFVLVDTGSVYGFGWMGFGSLG 295 (375)
Q Consensus 273 ~~~~l~~~g~vy~~G~n~~gqlg 295 (375)
..++++++|++..+-.+.....|
T Consensus 260 ~l~~~t~~g~~ir~~~~~i~~~~ 282 (307)
T 1zi0_A 260 QIMMITDAGTLVRTRVSEISIVG 282 (307)
T ss_dssp EEEEEESSCCEEEEEGGGSCBCC
T ss_pred eEEEEcCCCcEEEEecccccccC
Confidence 67889999999877655443333
No 95
>3p6j_A De novo designed beta-trefoil architecture with S primary structure; de novo protein; 1.35A {Synthetic}
Probab=68.41 E-value=36 Score=25.67 Aligned_cols=106 Identities=14% Similarity=0.074 Sum_probs=60.8
Q ss_pred CCEEEEEeCC-CeEEEEECCCcEEEEeCCCCCccCCCCCCCccCceeeeccccCCccEEEEEcC-CCeEEEEeCCCCEEE
Q 017198 156 GSVVQIAAGP-SYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAG-DEHVVALDSSGYVYT 233 (375)
Q Consensus 156 ~~i~~i~~g~-~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~p~~i~~~~~~~~~i~~i~~g-~~~~~~lt~~g~v~~ 233 (375)
....++.|-. .+-+-+..||.|-+-.... +...-.++.. ....++.|.|- ...-+++..+|+||+
T Consensus 30 ~~~~~LYcr~~g~~LqI~~dG~V~Gt~~~~----------~~~s~lei~s---v~~G~V~L~g~~sg~yL~mn~~G~l~G 96 (142)
T 3p6j_A 30 NGEVLLKSTETGQYLRINPDGTVDGTRDRS----------DTHIQFQISP---EGNGEVLLKSTETGQYLRINPDGTVDG 96 (142)
T ss_dssp TTCEEEEETTTCCEEEECTTSBEEEECCTT----------CGGGCEEEEE---EETTEEEEEETTTTEEEEECTTSBEEE
T ss_pred CcEEEEEEeCCCEEEEECCCCCEeeecCCC----------CCceEEEEEE---ccCCEEEEEEecCCEEEeECCCCCEee
Confidence 6788999976 6778888899998653311 1111112222 12257788775 577888999999997
Q ss_pred EeCCCCCCCCCCCCCCcccCeeccC-CCCCceEEEEecCCcEEEEEcCCcEEE
Q 017198 234 WGKGYCGALGHGDEIDKTLPEPLSS-LKSHLAVQVCARKRKTFVLVDTGSVYG 285 (375)
Q Consensus 234 ~G~n~~gqlg~~~~~~~~~p~~i~~-~~~~~i~~i~~g~~~~~~l~~~g~vy~ 285 (375)
--. .......-+.+.. .-...|..+.. ...++++++|++|.
T Consensus 97 s~~---------~t~ecsflEi~~en~y~v~i~g~~s--g~YLamnk~Grlyg 138 (142)
T 3p6j_A 97 TRD---------RSDTHIQFQISPEGNGEVLLKSTET--GQYLRINPDGTVDG 138 (142)
T ss_dssp ECC---------TTCGGGCEEEEECSTTCEEEEETTT--CCEEEECTTSBEEE
T ss_pred ccc---------CCCCceEEEEEeecCcEEEEEEecC--CEEEEECCCcCCcc
Confidence 422 1111222222221 11212333333 34889999999995
No 96
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=68.14 E-value=56 Score=27.79 Aligned_cols=145 Identities=10% Similarity=0.020 Sum_probs=74.9
Q ss_pred CceEEEEEcCCcEEEeeCCCCCcccCCCCCCceecCEEccccC---CcCeEEEE------ccCCeEEEEEcCCCEEEEeC
Q 017198 59 ENHAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALK---GVPCKQVT------AGLNFTGFLTIRGHVHTCGS 129 (375)
Q Consensus 59 ~~~~~~lt~~g~vy~~G~n~~gqlg~~~~~~~~~~p~~i~~~~---~~~i~~v~------~g~~~~~~lt~~g~v~~~G~ 129 (375)
....+.-..||.|..|-..... .....+.... ...+..+. ......+.-..+|.|+.|-.
T Consensus 129 ~~~l~~~~~d~~i~vwd~~~~~-----------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~ 197 (357)
T 3i2n_A 129 APEIVTGSRDGTVKVWDPRQKD-----------DPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDL 197 (357)
T ss_dssp CCEEEEEETTSCEEEECTTSCS-----------SCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEET
T ss_pred ccEEEEEeCCCeEEEEeCCCCC-----------CcceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEEC
Confidence 3455666678999999654411 0111121111 22455554 33445556677899999954
Q ss_pred CCCCcccCCCCCCCCcceeecCCCCCCCEEEEEeCC-----CeEEEEECCCcEEEEeCCCCCccCCCCCCCccCceeeec
Q 017198 130 NTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGP-----SYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQT 204 (375)
Q Consensus 130 n~~g~lg~~~~~~~~~p~~~~~~~~~~~i~~i~~g~-----~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~p~~i~~ 204 (375)
.... +...... ...|..++... .+.++-..+|.|+.|-...... . .......
T Consensus 198 ~~~~------------~~~~~~~--~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~--------~-~~~~~~~ 254 (357)
T 3i2n_A 198 RNMA------------LRWETNI--KNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHP--------T-KGFASVS 254 (357)
T ss_dssp TTTE------------EEEEEEC--SSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEET--------T-TEEEEEE
T ss_pred ccCc------------eeeecCC--CCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCc--------c-cceeeec
Confidence 3211 1111111 25677777653 5555667889999986432100 0 0000001
Q ss_pred cccCCccEEEEEcCCCe---EEEEeCCCCEEEEeCC
Q 017198 205 FRRKGIHVVRVSAGDEH---VVALDSSGYVYTWGKG 237 (375)
Q Consensus 205 ~~~~~~~i~~i~~g~~~---~~~lt~~g~v~~~G~n 237 (375)
+......|..++..... .+.-..+|.|+.|-..
T Consensus 255 ~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~ 290 (357)
T 3i2n_A 255 EKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYE 290 (357)
T ss_dssp EECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEE
T ss_pred cCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecC
Confidence 11233367777665543 3344688999999653
No 97
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=67.15 E-value=58 Score=27.66 Aligned_cols=17 Identities=29% Similarity=0.614 Sum_probs=12.5
Q ss_pred CCeeEEE-eCCcEEEEeC
Q 017198 7 RYHTLLI-SNSSVFSCGS 23 (375)
Q Consensus 7 ~~~~~~l-~~g~l~~wG~ 23 (375)
+.+..+. .+++||++|-
T Consensus 36 r~~~~~~~~~~~iyv~GG 53 (315)
T 4asc_A 36 KNHVSLVTKENQVFVAGG 53 (315)
T ss_dssp SSEEEEECTTCCEEEEEE
T ss_pred ccceEEEEECCEEEEEcC
Confidence 4444455 8999999996
No 98
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=66.91 E-value=61 Score=27.78 Aligned_cols=207 Identities=11% Similarity=-0.061 Sum_probs=97.6
Q ss_pred CEEEEecC--CceEEEEEcCCcEEEeeCCCCCcccCCCCCCceecCEEccccCCcCeEEEEcc--CCeEEEEEcCCCEEE
Q 017198 51 HVVQVSAS--ENHAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAG--LNFTGFLTIRGHVHT 126 (375)
Q Consensus 51 ~i~~i~~g--~~~~~~lt~~g~vy~~G~n~~gqlg~~~~~~~~~~p~~i~~~~~~~i~~v~~g--~~~~~~lt~~g~v~~ 126 (375)
.|..++.. ....+.-..||.|+.|-.... ...+..........|..++.. ....++...+|.|+.
T Consensus 54 ~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~-----------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i 122 (372)
T 1k8k_C 54 QVTGVDWAPDSNRIVTCGTDRNAYVWTLKGR-----------TWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISI 122 (372)
T ss_dssp CEEEEEEETTTTEEEEEETTSCEEEEEEETT-----------EEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEE
T ss_pred cccEEEEeCCCCEEEEEcCCCeEEEEECCCC-----------eeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEE
Confidence 56665543 445555667888888854321 111111111112345555543 345556677888888
Q ss_pred EeCCCCCcccCCCCCCCCcceeecCCCCCCCEEEEEeCC--CeEEEEECCCcEEEEeCCCCCccCCCCC----CCccCce
Q 017198 127 CGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGP--SYMLAVTGNGVVYSFGSGSNFCLGHGEQ----HDELQPR 200 (375)
Q Consensus 127 ~G~n~~g~lg~~~~~~~~~p~~~~~~~~~~~i~~i~~g~--~~~~~lt~~g~v~~~G~n~~gqlg~~~~----~~~~~p~ 200 (375)
|-...... ......+.. .....|..++... .+.+.-..+|.|+.|-......-..... .......
T Consensus 123 ~d~~~~~~--------~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~ 193 (372)
T 1k8k_C 123 CYFEQEND--------WWVCKHIKK-PIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGE 193 (372)
T ss_dssp EEEETTTT--------EEEEEEECT-TCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTC
T ss_pred EEecCCCc--------ceeeeeeec-ccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhh
Confidence 84332110 000111111 1125677777653 3455557889999997532110000000 0011112
Q ss_pred eeeccccCCccEEEEEcCC--CeEEEEeCCCCEEEEeCCCCCCCCCCCCCCcccCeeccCCCCCceEEEEec-CCcEEEE
Q 017198 201 AIQTFRRKGIHVVRVSAGD--EHVVALDSSGYVYTWGKGYCGALGHGDEIDKTLPEPLSSLKSHLAVQVCAR-KRKTFVL 277 (375)
Q Consensus 201 ~i~~~~~~~~~i~~i~~g~--~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~p~~i~~~~~~~i~~i~~g-~~~~~~l 277 (375)
.+..+......|..++... ...+....+|.|..|-...... ...+. .....|..++.. +...++.
T Consensus 194 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~-----------~~~~~-~~~~~v~~~~~~~~~~~l~~ 261 (372)
T 1k8k_C 194 LMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMA-----------VATLA-SETLPLLAVTFITESSLVAA 261 (372)
T ss_dssp EEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTE-----------EEEEE-CSSCCEEEEEEEETTEEEEE
T ss_pred heEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCce-----------eEEEc-cCCCCeEEEEEecCCCEEEE
Confidence 2222322333566666543 3455557788888886432110 01111 122245555543 3345555
Q ss_pred EcCCcEEEEeCC
Q 017198 278 VDTGSVYGFGWM 289 (375)
Q Consensus 278 ~~~g~vy~~G~n 289 (375)
..++.++.|-..
T Consensus 262 ~~d~~i~i~~~~ 273 (372)
T 1k8k_C 262 GHDCFPVLFTYD 273 (372)
T ss_dssp ETTSSCEEEEEE
T ss_pred EeCCeEEEEEcc
Confidence 678888888643
No 99
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=66.19 E-value=52 Score=26.79 Aligned_cols=16 Identities=13% Similarity=0.204 Sum_probs=11.3
Q ss_pred CCeeEEE-eCCcEEEEe
Q 017198 7 RYHTLLI-SNSSVFSCG 22 (375)
Q Consensus 7 ~~~~~~l-~~g~l~~wG 22 (375)
.-+.+++ .+|++|+.+
T Consensus 25 ~p~~i~~~~~g~l~v~~ 41 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTS 41 (270)
T ss_dssp CEEEEEECTTCCEEEEE
T ss_pred CccceEECCCCCEEEEc
Confidence 3456777 889998833
No 100
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=65.67 E-value=86 Score=29.05 Aligned_cols=181 Identities=16% Similarity=0.122 Sum_probs=88.9
Q ss_pred CEEEEecC--CceEEEEEcCCcEEEeeCCCCCcccCCCCCCceecCEEccccCCcCeEEEEcc--CCeEEEEEcCCCEEE
Q 017198 51 HVVQVSAS--ENHAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAG--LNFTGFLTIRGHVHT 126 (375)
Q Consensus 51 ~i~~i~~g--~~~~~~lt~~g~vy~~G~n~~gqlg~~~~~~~~~~p~~i~~~~~~~i~~v~~g--~~~~~~lt~~g~v~~ 126 (375)
.+..++.. ....+.-.+||.+..|-.+. ++ ...+.. ....|..++.. ....+....++.|..
T Consensus 346 ~v~~~~~s~~g~~l~~~~~dg~v~~~~~~~--~~-----------~~~~~~-~~~~v~~~~~s~dg~~l~~~~~d~~v~~ 411 (577)
T 2ymu_A 346 SVWGVAFSPDGQTIASASDDKTVKLWNRNG--QL-----------LQTLTG-HSSSVRGVAFSPDGQTIASASDDKTVKL 411 (577)
T ss_dssp CEEEEEECTTSSEEEEEETTSEEEEEETTC--CE-----------EEEEEC-CSSCEEEEEECTTSSCEEEEETTSEEEE
T ss_pred CEEEEEECCCCCEEEEEeCCCEEEEEcCCC--CE-----------EEEecC-CCCCeEEEEECCCCCEEEEEeCCCEEEE
Confidence 55555543 44555566788888885322 10 011111 12245555443 334455567888888
Q ss_pred EeCCCCCcccCCCCCCCCcceeecCCCCCCCEEEEEeCC--CeEEEEECCCcEEEEeCCCCCccCCCCCCCccCceeeec
Q 017198 127 CGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGP--SYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQT 204 (375)
Q Consensus 127 ~G~n~~g~lg~~~~~~~~~p~~~~~~~~~~~i~~i~~g~--~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~p~~i~~ 204 (375)
|-.+ ++ ....+... ...|..++... ...+.-..++.|..|-.+. ..+..
T Consensus 412 ~~~~--~~----------~~~~~~~~--~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~~---------------~~~~~ 462 (577)
T 2ymu_A 412 WNRN--GQ----------LLQTLTGH--SSSVWGVAFSPDDQTIASASDDKTVKLWNRNG---------------QLLQT 462 (577)
T ss_dssp ECTT--CC----------EEEEEECC--SSCEEEEEECTTSSEEEEEETTSEEEEEETTS---------------CEEEE
T ss_pred EeCC--CC----------EEEEecCC--CCCeEEEEECCCCCEEEEEcCCCEEEEEECCC---------------CEEEE
Confidence 8321 11 11111111 14677776653 3444446788888885321 11222
Q ss_pred cccCCccEEEEEcCCCe--EEEEeCCCCEEEEeCCCCCCCCCCCCCCcccCeeccCCCCCceEEEEecC--CcEEEEEcC
Q 017198 205 FRRKGIHVVRVSAGDEH--VVALDSSGYVYTWGKGYCGALGHGDEIDKTLPEPLSSLKSHLAVQVCARK--RKTFVLVDT 280 (375)
Q Consensus 205 ~~~~~~~i~~i~~g~~~--~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~p~~i~~~~~~~i~~i~~g~--~~~~~l~~~ 280 (375)
+......|..++...+. .+.-..++.|..|-.. +++ ...+. .....|..++... .+.+.-..|
T Consensus 463 ~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~~--~~~----------~~~~~-~h~~~v~~l~~s~dg~~l~s~~~d 529 (577)
T 2ymu_A 463 LTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN--GQL----------LQTLT-GHSSSVRGVAFSPDGQTIASASDD 529 (577)
T ss_dssp EECCSSCEEEEEECTTSCEEEEEETTSEEEEEETT--SCE----------EEEEE-CCSSCEEEEEECTTSSCEEEEETT
T ss_pred EcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcCC--CCE----------EEEEe-CCCCCEEEEEEcCCCCEEEEEECc
Confidence 22233356666655433 3333578888888532 111 01111 1223466665543 334445678
Q ss_pred CcEEEEe
Q 017198 281 GSVYGFG 287 (375)
Q Consensus 281 g~vy~~G 287 (375)
|.|+.|-
T Consensus 530 g~v~lwd 536 (577)
T 2ymu_A 530 KTVKLWN 536 (577)
T ss_dssp SEEEEEC
T ss_pred CEEEEEe
Confidence 8899984
No 101
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=65.06 E-value=61 Score=27.15 Aligned_cols=164 Identities=16% Similarity=0.141 Sum_probs=74.9
Q ss_pred CCEEEEEeC-CCeEEEEECCCc-EEEEeCCCCCccCCCCCCCccCceeeeccccCCccEEEEEcCCCeEEEEeCCCC-EE
Q 017198 156 GSVVQIAAG-PSYMLAVTGNGV-VYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGDEHVVALDSSGY-VY 232 (375)
Q Consensus 156 ~~i~~i~~g-~~~~~~lt~~g~-v~~~G~n~~gqlg~~~~~~~~~p~~i~~~~~~~~~i~~i~~g~~~~~~lt~~g~-v~ 232 (375)
.++.-..++ ....++++.+|+ ++.++.... + ......|..+.... .+ .+.-.........+++.+|+ +|
T Consensus 88 G~~lv~~~~~~~~v~~vd~~Gk~l~~~~~~~~--~----~~~~~~~~~v~~~~-~G-~~lv~~~~~~~v~~~d~~G~~~w 159 (276)
T 3no2_A 88 GNALVAWCGHPSTILEVNMKGEVLSKTEFETG--I----ERPHAQFRQINKNK-KG-NYLVPLFATSEVREIAPNGQLLN 159 (276)
T ss_dssp SCEEEEEESTTEEEEEECTTSCEEEEEEECCS--C----SSGGGSCSCCEECT-TS-CEEEEETTTTEEEEECTTSCEEE
T ss_pred CCEEEEecCCCCEEEEEeCCCCEEEEEeccCC--C----CcccccccCceECC-CC-CEEEEecCCCEEEEECCCCCEEE
Confidence 455555566 556667777775 456554211 0 01111222222221 12 34433445566677777775 45
Q ss_pred EEeCCCCCCCCCCCCCCcccCeeccCCCCCceEEEEecCCcEEEEEcC-Cc-EEEEeCCCCCCCCCCCCCCCCceecceE
Q 017198 233 TWGKGYCGALGHGDEIDKTLPEPLSSLKSHLAVQVCARKRKTFVLVDT-GS-VYGFGWMGFGSLGFPDRGVSDKVLRPRI 310 (375)
Q Consensus 233 ~~G~n~~gqlg~~~~~~~~~p~~i~~~~~~~i~~i~~g~~~~~~l~~~-g~-vy~~G~n~~gqlg~~~~~~~~~~~~p~~ 310 (375)
.++... .|.-+....+..+.-........++++.+ |+ +|.++.+... ......|..
T Consensus 160 ~~~~~~-------------~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~---------~~~l~~~~~ 217 (276)
T 3no2_A 160 SVKLSG-------------TPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNANDIE---------GVQLFFVAQ 217 (276)
T ss_dssp EEECSS-------------CCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGGSB---------SCCCSEEEE
T ss_pred EEECCC-------------CccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCCC---------Ccccccccc
Confidence 555420 11112222333344233333345566655 65 4566533211 001223444
Q ss_pred cCccCCCcEEEEEe-C---------CCceEEEEcCCCEEEeeCCCCCCCC
Q 017198 311 LDSLRAHHVSQIST-G---------LYHTVVVTDRGRLFGFGDNERAQLG 350 (375)
Q Consensus 311 ~~~~~~~~i~~i~~-G---------~~h~~~l~~~g~v~~wG~n~~gqlG 350 (375)
+..+.+.++.-... | ..+.+.++.+|++ .|=.++....|
T Consensus 218 ~~~~~~G~i~v~~~~g~~~~~~~~~~~~~~~~~~~g~~-~W~~~~~~~~~ 266 (276)
T 3no2_A 218 LFPLQNGGLYICNWQGHDREAGKGKHPQLVEIDSEGKV-VWQLNDKVKFG 266 (276)
T ss_dssp EEECTTSCEEEEEECTTCTTGGGSCCCSEEEECTTSBE-EEEECCTTTSC
T ss_pred ceEcCCCCEEEEeccCccccccccCCceEEEECCCCCE-EEEecCccccc
Confidence 44444545543332 2 3468889899985 45444444444
No 102
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=64.09 E-value=61 Score=26.79 Aligned_cols=16 Identities=0% Similarity=0.245 Sum_probs=11.0
Q ss_pred eeEEE-eCCcEEEEeCC
Q 017198 9 HTLLI-SNSSVFSCGSS 24 (375)
Q Consensus 9 ~~~~l-~~g~l~~wG~n 24 (375)
+.+++ .++++|+....
T Consensus 33 ~~v~~~~~g~l~v~~~~ 49 (286)
T 1q7f_A 33 SGVAVNAQNDIIVADTN 49 (286)
T ss_dssp EEEEECTTCCEEEEEGG
T ss_pred ceEEECCCCCEEEEECC
Confidence 45666 77888887653
No 103
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=63.94 E-value=73 Score=27.67 Aligned_cols=264 Identities=14% Similarity=0.093 Sum_probs=129.5
Q ss_pred CceEEEEEcCCcEEEeeCCCCCcccCCCCCCceecCEEccccCCcCe--EEEEccCCeEEEEEcCCCEEEEeCCCCCccc
Q 017198 59 ENHAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPC--KQVTAGLNFTGFLTIRGHVHTCGSNTHGQLG 136 (375)
Q Consensus 59 ~~~~~~lt~~g~vy~~G~n~~gqlg~~~~~~~~~~p~~i~~~~~~~i--~~v~~g~~~~~~lt~~g~v~~~G~n~~g~lg 136 (375)
....+++|++|.+--.-...+...+.. .+...++..+ ..++.+..+.+++|+.|++|..-....-..+
T Consensus 5 e~~~v~lT~~G~IKr~~~~~~~~~~~~----------~~~lke~D~l~~~~~~~t~d~ll~fT~~Gr~~~~~~~elp~~~ 74 (323)
T 1wp5_A 5 EDVIVTVTKDGYVKRTSLRSYAASNGQ----------DFAMKDTDRLLAMLEMNTKDVLLLFTNKGNYLYCPVHELPDIR 74 (323)
T ss_dssp CEEEEEEETTCEEEEEEHHHHHHTTTC----------CCCCCTTCCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCC
T ss_pred CcEEEEEeCCCEEEEeEHHHhhhcCcc----------ccccCCCCEEEEEEEECCCCEEEEEECCCEEEEEEHHHCcCCC
Confidence 345778888888755432221110100 1111122233 3355678889999999999998665433222
Q ss_pred CCCCCCCCcce-eecCCCCCCCEEEEEeCC-----CeEEEEECCCcEEEEeCCCCCccCCCCCCCccCceeeeccccCCc
Q 017198 137 HGDTLDRPTPK-SIAPLEEVGSVVQIAAGP-----SYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGI 210 (375)
Q Consensus 137 ~~~~~~~~~p~-~~~~~~~~~~i~~i~~g~-----~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~p~~i~~~~~~~~ 210 (375)
... .-.|. .+-.+...++|+.+..-. .+.+++|++|.+.-.-...+.... .........+... -
T Consensus 75 r~a---~G~~i~~~i~L~~~e~Iv~~~~~~~~~~~~~ll~~T~~G~iKrt~l~e~~~~~------r~~G~~ai~l~e~-d 144 (323)
T 1wp5_A 75 WKD---LGQHIANIIPIDRDEEIIKAIPINDFELNGYFLFVTRNGMVKKTELKHYKAQR------YSKPLTGINLKND-D 144 (323)
T ss_dssp TTS---CCEEGGGTSCCCTTCCEEEEEEESCTTSSCEEEEEETTSEEEEEEGGGGCCSC------CSSCEECSCCCTT-C
T ss_pred CCC---CCcChhhccCCCCCCEEEEEEEecccCCCceEEEEeCCCeEEEeEHHHhhhcc------ccCceEEEEeCCC-C
Confidence 111 11111 111234446788765433 367888999988877554332110 0111111112211 1
Q ss_pred cEEE--EEcCCCeEEEEeCCCCEEEEeCCCCCCCCCCCCCCcccCeeccCCCCCceEEEEec--CC-cEEEEEcCCcEEE
Q 017198 211 HVVR--VSAGDEHVVALDSSGYVYTWGKGYCGALGHGDEIDKTLPEPLSSLKSHLAVQVCAR--KR-KTFVLVDTGSVYG 285 (375)
Q Consensus 211 ~i~~--i~~g~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~p~~i~~~~~~~i~~i~~g--~~-~~~~l~~~g~vy~ 285 (375)
.++. +..+.++.+++|++|+++.+-.+.--.+|...... ..+....+..|+.+..- .. ..+.++++|..-.
T Consensus 145 ~lv~~~~~~~~~~i~l~T~~G~~irf~~~ev~~~gR~a~GV----~~i~L~~~d~Vv~~~~~~~~~~~ll~vt~~G~gKr 220 (323)
T 1wp5_A 145 QVVDVHLTDGMNELFLVTHNGYALWFDESEVSIVGVRAAGV----KGMNLKEGDYIVSGQLITSKDESIVVATQRGAVKK 220 (323)
T ss_dssp CEEEEEEECSCSEEEEEETTSEEEEEEGGGSCBCCSSCCCE----ECCCCCTTCCEEEEEEECCTTCEEEEEETTSEEEE
T ss_pred EEEEEEEeCCCCEEEEEeCCCcEEEEEHHHCcccCCCCcCE----EEEEeCCCCEEEEEEEEcCCCcEEEEEECCCceEE
Confidence 2333 23367788999999999988765543344322211 11222234456655332 22 4666677776444
Q ss_pred EeCCCCCCCCCCCCCCCCceecceEcCccCCCcEEEE--EeCCCceEEEEcCCCEEEeeCCCCCCCCc
Q 017198 286 FGWMGFGSLGFPDRGVSDKVLRPRILDSLRAHHVSQI--STGLYHTVVVTDRGRLFGFGDNERAQLGH 351 (375)
Q Consensus 286 ~G~n~~gqlg~~~~~~~~~~~~p~~~~~~~~~~i~~i--~~G~~h~~~l~~~g~v~~wG~n~~gqlG~ 351 (375)
.-...+...+.+. .-...+..++. .+..++.+ ..+....++++++|++.-.--++--.+|.
T Consensus 221 ~~~~e~~~~~Rg~----kGv~~~~~~~~-~~~~l~~~~~v~~~~~i~~it~~g~~ir~~~~~i~~~~R 283 (323)
T 1wp5_A 221 MKLTEFEKATRAK----RGVVILRELKA-NPHRISGFVVAQDSDTIYLQTEKSFIETIKVGDIRFSDR 283 (323)
T ss_dssp EEGGGSCCCCTTS----CCEECSCCCSS-SCCCEEEEEEECTTCEEEEEETTSCEEEEEGGGSCBCCS
T ss_pred EEHHHccccCCCC----CCEECeeecCC-CCceEEEEEEeCCCCeEEEEeCCCeEEEEEhhhcCccCc
Confidence 3333322222211 00111111110 12244432 23567788999999987775555444444
No 104
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=62.91 E-value=73 Score=27.29 Aligned_cols=113 Identities=10% Similarity=0.092 Sum_probs=57.0
Q ss_pred CCCEEEEecCC----ceEEEEEcCCcEEEeeCCCCCcccCCCCCCceecCEEccccCCcCeEEEEccCC--eEEEEEcCC
Q 017198 49 AAHVVQVSASE----NHAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGLN--FTGFLTIRG 122 (375)
Q Consensus 49 ~~~i~~i~~g~----~~~~~lt~~g~vy~~G~n~~gqlg~~~~~~~~~~p~~i~~~~~~~i~~v~~g~~--~~~~lt~~g 122 (375)
...|..++... ...+.-..||.|..|-......+ ..........|..++.... ..+.-..||
T Consensus 125 ~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~------------~~~~~~~~~~i~~~~~~pdg~~lasg~~dg 192 (343)
T 3lrv_A 125 ANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQY------------IVHSAKSDVEYSSGVLHKDSLLLALYSPDG 192 (343)
T ss_dssp SSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEE------------EEECCCSSCCCCEEEECTTSCEEEEECTTS
T ss_pred CCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEE------------EEEecCCCCceEEEEECCCCCEEEEEcCCC
Confidence 34687777654 34444667899999965542110 0011111112344443322 222336788
Q ss_pred CEEEEeCCCCCcccCCCCCCCCcceeecCCCCCCCEEEEEeCC-CeEEEEECCCcEEEEeCCC
Q 017198 123 HVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGP-SYMLAVTGNGVVYSFGSGS 184 (375)
Q Consensus 123 ~v~~~G~n~~g~lg~~~~~~~~~p~~~~~~~~~~~i~~i~~g~-~~~~~lt~~g~v~~~G~n~ 184 (375)
.|..|-...... .+..+.. .....|..++... ...++...++.|..|-...
T Consensus 193 ~i~iwd~~~~~~----------~~~~~~~-~h~~~v~~l~fs~~g~~l~s~~~~~v~iwd~~~ 244 (343)
T 3lrv_A 193 ILDVYNLSSPDQ----------ASSRFPV-DEEAKIKEVKFADNGYWMVVECDQTVVCFDLRK 244 (343)
T ss_dssp CEEEEESSCTTS----------CCEECCC-CTTSCEEEEEECTTSSEEEEEESSBEEEEETTS
T ss_pred EEEEEECCCCCC----------CccEEec-cCCCCEEEEEEeCCCCEEEEEeCCeEEEEEcCC
Confidence 888885432111 1112221 0125788888754 3344444466999997643
No 105
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=62.67 E-value=77 Score=27.46 Aligned_cols=158 Identities=16% Similarity=0.054 Sum_probs=75.6
Q ss_pred CCEEEEEeCCCeEEEEECCCcEEEEeCCCCCccCCCCCCCccCceeeeccccCCccEEEEEcCCCeEEEE--eCCCCEEE
Q 017198 156 GSVVQIAAGPSYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGDEHVVAL--DSSGYVYT 233 (375)
Q Consensus 156 ~~i~~i~~g~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~p~~i~~~~~~~~~i~~i~~g~~~~~~l--t~~g~v~~ 233 (375)
..|..++......++. .++.++.|-.....+ .+..+.. ...+..++. ...++. ..+|.|..
T Consensus 101 ~~v~~v~~~~~~~~~~-~~~~i~i~d~~~~~~-------------~~~~~~~-~~~~~~~s~--~~la~~sg~~~g~v~i 163 (355)
T 3vu4_A 101 APVKDLFLSREFIVVS-YGDVISVFKFGNPWK-------------RITDDIR-FGGVCEFSN--GLLVYSNEFNLGQIHI 163 (355)
T ss_dssp SCEEEEEECSSEEEEE-ETTEEEEEESSTTCC-------------BSSCCEE-EEEEEEEET--TEEEEEESSCTTCEEE
T ss_pred CceEEEEEcCCEEEEE-EcCEEEEEECCCCce-------------eeEEecc-CCceEEEEc--cEEEEeCCCcCcEEEE
Confidence 5788888877765554 478899997643201 1110100 012344443 322232 57899999
Q ss_pred EeCCCCCCCCCCCC---CCcccC-eeccCCCCCceEEEEecCCcE--EEEEcCCc-EEEEeCCCCCCCCCCCCCCCCcee
Q 017198 234 WGKGYCGALGHGDE---IDKTLP-EPLSSLKSHLAVQVCARKRKT--FVLVDTGS-VYGFGWMGFGSLGFPDRGVSDKVL 306 (375)
Q Consensus 234 ~G~n~~gqlg~~~~---~~~~~p-~~i~~~~~~~i~~i~~g~~~~--~~l~~~g~-vy~~G~n~~gqlg~~~~~~~~~~~ 306 (375)
|-.....++..... .....| ..........|..++...+.. +.-..||. |..|-.....
T Consensus 164 wd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~-------------- 229 (355)
T 3vu4_A 164 TKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGV-------------- 229 (355)
T ss_dssp EECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCC--------------
T ss_pred EECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCc--------------
Confidence 97654221111000 001112 122222344577776654433 33357787 8888743211
Q ss_pred cceEcC-ccCCCcEEEEEeCCC--ceEEEEcCCCEEEeeCC
Q 017198 307 RPRILD-SLRAHHVSQISTGLY--HTVVVTDRGRLFGFGDN 344 (375)
Q Consensus 307 ~p~~~~-~~~~~~i~~i~~G~~--h~~~l~~~g~v~~wG~n 344 (375)
....+. ......|..++.... ..+.-..|+.|..|--.
T Consensus 230 ~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~ 270 (355)
T 3vu4_A 230 LVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIF 270 (355)
T ss_dssp EEEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESS
T ss_pred EEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEcc
Confidence 011111 112336777776543 33444578899999643
No 106
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=60.37 E-value=76 Score=26.65 Aligned_cols=17 Identities=12% Similarity=0.159 Sum_probs=12.6
Q ss_pred CeeEEEeCCcEEEEeCC
Q 017198 8 YHTLLISNSSVFSCGSS 24 (375)
Q Consensus 8 ~~~~~l~~g~l~~wG~n 24 (375)
.|+++.-+++||++|-.
T Consensus 101 ~~~~~~~~~~iyv~GG~ 117 (302)
T 2xn4_A 101 TLGAAVLNGLLYAVGGF 117 (302)
T ss_dssp SCEEEEETTEEEEEEEE
T ss_pred ceEEEEECCEEEEEcCC
Confidence 45555578899999953
No 107
>1zvu_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 3.00A {Escherichia coli}
Probab=59.60 E-value=1.3e+02 Score=29.28 Aligned_cols=123 Identities=15% Similarity=0.093 Sum_probs=70.6
Q ss_pred ecCCceEEEEEcCCcEEEeeCCCCCcccCCCCCCceecCEEccccCCcCeEEEEcc--CCeEEEEEcCCCEEEEeCCCCC
Q 017198 56 SASENHAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAG--LNFTGFLTIRGHVHTCGSNTHG 133 (375)
Q Consensus 56 ~~g~~~~~~lt~~g~vy~~G~n~~gqlg~~~~~~~~~~p~~i~~~~~~~i~~v~~g--~~~~~~lt~~g~v~~~G~n~~g 133 (375)
+...+..+++|+.|++|..-...- ..+. .........+....+.+|..+... ..+.++.|++|.+.-.-...+.
T Consensus 511 ~~t~d~ll~ft~~Gr~y~~~~~~l---P~~~-~~G~~i~~ll~l~~~e~i~~~~~~~~~~~l~~~T~~G~vk~~~l~~~~ 586 (716)
T 1zvu_A 511 GKSNQPVVFVDSTGRSYAIDPITL---PSAR-GQGEPLTGKLTLPPGATVDHMLMESDDQKLLMASDAGYGFVCTFNDLV 586 (716)
T ss_dssp CCSSSCEEEEETTSEEEEECTTTS---CCCC----CBSTTTSCCCTTCCEEEEECCCTTCEEEEEBTTSEEEEEEGGGGC
T ss_pred ecCCCEEEEEecCCcEEEEEeeec---cccc-ccCeeHHhccCCCCCCeEEEEEEecCCceEEEEeCCceEEEecHHHhc
Confidence 334677899999999998865542 1111 111111222333356678877664 3457788999988876543321
Q ss_pred cccCCCCCCCCcceeecCCCCCCCEEEEE---eCCCeEEEEECCCcEEEEeCCCCCccC
Q 017198 134 QLGHGDTLDRPTPKSIAPLEEVGSVVQIA---AGPSYMLAVTGNGVVYSFGSGSNFCLG 189 (375)
Q Consensus 134 ~lg~~~~~~~~~p~~~~~~~~~~~i~~i~---~g~~~~~~lt~~g~v~~~G~n~~gqlg 189 (375)
. ..........+.....++.+. .+..+.++++++|++..|-...-..+|
T Consensus 587 ~-------~~~~g~~ai~L~~~d~lv~~~~~~~~~~~v~l~t~~g~~lrf~~~~v~~~g 638 (716)
T 1zvu_A 587 A-------RNRAGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQLS 638 (716)
T ss_dssp C-------CSTTCEECBCCCTTCCBCCCEECCCTTCEEEEEETTSEEEEEESTTSCBCS
T ss_pred c-------cCccceEEEeeCCCCEEEEEEEecCCCCEEEEEeCCCeEEEEEHHHCCccC
Confidence 1 112222222233334444332 367789999999999999876654443
No 108
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=55.57 E-value=45 Score=28.42 Aligned_cols=17 Identities=29% Similarity=0.354 Sum_probs=12.7
Q ss_pred CeeEEEeCCcEEEEeCC
Q 017198 8 YHTLLISNSSVFSCGSS 24 (375)
Q Consensus 8 ~~~~~l~~g~l~~wG~n 24 (375)
.|+++..+++||++|-.
T Consensus 141 ~~~~~~~~~~iyv~GG~ 157 (315)
T 4asc_A 141 GHTVLSHMDLVYVIGGK 157 (315)
T ss_dssp SCEEEEETTEEEEECCB
T ss_pred ceeEEEECCEEEEEeCC
Confidence 45555588899999964
No 109
>3p6j_A De novo designed beta-trefoil architecture with S primary structure; de novo protein; 1.35A {Synthetic}
Probab=54.80 E-value=65 Score=24.19 Aligned_cols=110 Identities=14% Similarity=0.067 Sum_probs=62.1
Q ss_pred cCCcCeEEEEccC-CeEEEEEcCCCEEEEeCCCCCcccCCCCCCCCcceeecCCCCCCCEEEEEeC-CCeEEEEECCCcE
Q 017198 100 LKGVPCKQVTAGL-NFTGFLTIRGHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAG-PSYMLAVTGNGVV 177 (375)
Q Consensus 100 ~~~~~i~~v~~g~-~~~~~lt~~g~v~~~G~n~~g~lg~~~~~~~~~p~~~~~~~~~~~i~~i~~g-~~~~~~lt~~g~v 177 (375)
++....+++.|-. .+.+-+..||.|-...... ....-..+.... ..++.|.|- ..+.+++..+|+|
T Consensus 27 ~~~~~~~~LYcr~~g~~LqI~~dG~V~Gt~~~~----------~~~s~lei~sv~--~G~V~L~g~~sg~yL~mn~~G~l 94 (142)
T 3p6j_A 27 PEGNGEVLLKSTETGQYLRINPDGTVDGTRDRS----------DTHIQFQISPEG--NGEVLLKSTETGQYLRINPDGTV 94 (142)
T ss_dssp ECSTTCEEEEETTTCCEEEECTTSBEEEECCTT----------CGGGCEEEEEEE--TTEEEEEETTTTEEEEECTTSBE
T ss_pred cccCcEEEEEEeCCCEEEEECCCCCEeeecCCC----------CCceEEEEEEcc--CCEEEEEEecCCEEEeECCCCCE
Confidence 3455678888865 5677788899887653321 111111222211 357888876 5788899999999
Q ss_pred EEEeCCCCCccCCCCCCCccCceeeeccccCCccEEEEEc-CCCeEEEEeCCCCEEEE
Q 017198 178 YSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSA-GDEHVVALDSSGYVYTW 234 (375)
Q Consensus 178 ~~~G~n~~gqlg~~~~~~~~~p~~i~~~~~~~~~i~~i~~-g~~~~~~lt~~g~v~~~ 234 (375)
++--. ..+.....++..... -.+.|.. -...-+|++.+|++|+-
T Consensus 95 ~Gs~~----------~t~ecsflEi~~en~---y~v~i~g~~sg~YLamnk~Grlygs 139 (142)
T 3p6j_A 95 DGTRD----------RSDTHIQFQISPEGN---GEVLLKSTETGQYLRINPDGTVDGT 139 (142)
T ss_dssp EEECC----------TTCGGGCEEEEECST---TCEEEEETTTCCEEEECTTSBEEEE
T ss_pred eeccc----------CCCCceEEEEEeecC---cEEEEEEecCCEEEEECCCcCCccC
Confidence 97422 111122222221111 2223332 22358899999999963
No 110
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=54.20 E-value=1.2e+02 Score=26.91 Aligned_cols=100 Identities=9% Similarity=0.012 Sum_probs=56.3
Q ss_pred CCeEEEEEcCCCEEEEeCCCCCcccCCCCCCCCcceeecCCCCCCCEEEEEeCC--CeEEEEECCCcEEEEeCCCCCccC
Q 017198 112 LNFTGFLTIRGHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGP--SYMLAVTGNGVVYSFGSGSNFCLG 189 (375)
Q Consensus 112 ~~~~~~lt~~g~v~~~G~n~~g~lg~~~~~~~~~p~~~~~~~~~~~i~~i~~g~--~~~~~lt~~g~v~~~G~n~~gqlg 189 (375)
....+++.-|+.||.|=..... ....+........|..|+... .+.+.-..+|.|..|-....
T Consensus 115 ~~n~lAvgld~tV~lWd~~tg~-----------~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~---- 179 (420)
T 4gga_A 115 SGNVLAVALDNSVYLWSASSGD-----------ILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQ---- 179 (420)
T ss_dssp TTSEEEEEETTEEEEEETTTCC-----------EEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTT----
T ss_pred CCCEEEEEeCCEEEEEECCCCC-----------EEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCC----
Confidence 4457778889999999543211 011111111224688888664 34444578899999965321
Q ss_pred CCCCCCccCceeeeccccCCccEEEEEcCCCeEEEEeCCCCEEEEeC
Q 017198 190 HGEQHDELQPRAIQTFRRKGIHVVRVSAGDEHVVALDSSGYVYTWGK 236 (375)
Q Consensus 190 ~~~~~~~~~p~~i~~~~~~~~~i~~i~~g~~~~~~lt~~g~v~~~G~ 236 (375)
..+..+......+..++......+.-..++.++.|-.
T Consensus 180 ----------~~~~~~~~h~~~v~~~s~~~~~l~sgs~d~~i~~~d~ 216 (420)
T 4gga_A 180 ----------KRLRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDV 216 (420)
T ss_dssp ----------EEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEET
T ss_pred ----------cEEEEEeCCCCceEEEeeCCCEEEEEeCCCceeEeee
Confidence 1222222233356666665555555567777777753
No 111
>1zvt_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 1.70A {Escherichia coli}
Probab=54.20 E-value=95 Score=25.88 Aligned_cols=158 Identities=13% Similarity=0.076 Sum_probs=84.8
Q ss_pred eEEEEEcCCcEEEeeCCCCCcccCCCCCCceecCEEccccCCcCeEE--EEccCCeEEEEEcCCCEEEEeCCCCCcccCC
Q 017198 61 HAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQ--VTAGLNFTGFLTIRGHVHTCGSNTHGQLGHG 138 (375)
Q Consensus 61 ~~~~lt~~g~vy~~G~n~~gqlg~~~~~~~~~~p~~i~~~~~~~i~~--v~~g~~~~~~lt~~g~v~~~G~n~~g~lg~~ 138 (375)
-.+++|++|.+-......++ ...+...++..+.. .+.+..+.+++|+.|++|..-..+.-. .
T Consensus 4 v~v~lT~~G~iKr~~~~~~~-------------~~~~~lke~D~l~~~~~~~t~~~ll~~T~~Gr~~~~~~~elp~---~ 67 (256)
T 1zvt_A 4 VTIVLSQMGWVRSAKGHDID-------------APGLNYKAGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPS---A 67 (256)
T ss_dssp EEEEEETTSEEEEEESSCCC-------------STTSCCCTTCCEEEEEEEETTSCEEEEETTSEEEEECGGGSCC---S
T ss_pred EEEEEeCCCEEEEeeCCcCC-------------ceeccCCCCCEEEEEEEeCCCCEEEEEeCCCeEEEEEHHHCCC---c
Confidence 35678888888655433321 11111122333433 345677889999999999986543211 1
Q ss_pred CCCCCCcce-eecCCCCCCCEEEEEeC--CCeEEEEECCCcEEEEeCCCCCccCCCCCCCccCceeeeccccCCccEEEE
Q 017198 139 DTLDRPTPK-SIAPLEEVGSVVQIAAG--PSYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRV 215 (375)
Q Consensus 139 ~~~~~~~p~-~~~~~~~~~~i~~i~~g--~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~p~~i~~~~~~~~~i~~i 215 (375)
. ..-.|. ..-.+...++|+.+... ..+.+++|++|.+.-.-...+... ...-..+..+.... .++.+
T Consensus 68 r--~~G~~i~~~i~L~~~e~Iv~~~~~~~~~~lll~T~~G~~Kr~~~~e~~~~-------~r~G~~~i~L~~~d-~lv~~ 137 (256)
T 1zvt_A 68 R--GQGEPLTGKLTLPPGATVDHMLMESDDQKLLMASDAGYGFVCTFNDLVAR-------NRAGKALITLPENA-HVMPP 137 (256)
T ss_dssp S--SCCEEGGGTCCCCTTCCEEEEECCCTTCEEEEEBTTSEEEEEEGGGGCCC-------STTCEECBCCCTTC-CBCCC
T ss_pred C--CCCeEeeeeecCCCCCEEEEEEEeCCCCEEEEEeCCCeEEEeEHHHhccc-------CcCceEEEEECCCC-EEEEE
Confidence 0 111111 11224444788888763 456788899998887755443111 01111111222111 22222
Q ss_pred --E-cCCCeEEEEeCCCCEEEEeCCCCCCCCC
Q 017198 216 --S-AGDEHVVALDSSGYVYTWGKGYCGALGH 244 (375)
Q Consensus 216 --~-~g~~~~~~lt~~g~v~~~G~n~~gqlg~ 244 (375)
. .+..+.+++|++|++..+-.+..-.+|.
T Consensus 138 ~~~~~~~~~i~l~T~~G~~lrf~~~ei~~~gR 169 (256)
T 1zvt_A 138 VVIEDASDMLLAITQAGRMLMFPVSDLPQLSK 169 (256)
T ss_dssp EECCCTTCEEEEEETTSEEEEEEGGGSCBCSS
T ss_pred EEecCCCCEEEEEcCCCeEEEEEHHHCCCcCc
Confidence 2 2567888999999998887665444443
No 112
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=53.28 E-value=99 Score=25.80 Aligned_cols=147 Identities=12% Similarity=0.089 Sum_probs=73.1
Q ss_pred CEEEEecCC--ceEEEEEcCCcEEEeeCCCCCcccCCCCCCceecCEEccccCCcCeEEEEc--cCCeEEEEEcCCCEEE
Q 017198 51 HVVQVSASE--NHAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTA--GLNFTGFLTIRGHVHT 126 (375)
Q Consensus 51 ~i~~i~~g~--~~~~~lt~~g~vy~~G~n~~gqlg~~~~~~~~~~p~~i~~~~~~~i~~v~~--g~~~~~~lt~~g~v~~ 126 (375)
.|..++... ...+.-..||.|..|-...... ...+.. ....|..++. .....+.-..+|.|..
T Consensus 67 ~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~------------~~~~~~-~~~~v~~~~~~~~~~~l~s~~~d~~i~i 133 (312)
T 4ery_A 67 GISDVAWSSDSNLLVSASDDKTLKIWDVSSGKC------------LKTLKG-HSNYVFCCNFNPQSNLIVSGSFDESVRI 133 (312)
T ss_dssp CEEEEEECTTSSEEEEEETTSEEEEEETTTCCE------------EEEEEC-CSSCEEEEEECSSSSEEEEEETTSCEEE
T ss_pred ceEEEEEcCCCCEEEEECCCCEEEEEECCCCcE------------EEEEcC-CCCCEEEEEEcCCCCEEEEEeCCCcEEE
Confidence 566666543 3445555788899886543110 011111 1223444433 3344555677888988
Q ss_pred EeCCCCCcccCCCCCCCCcceeecCCCCCCCEEEEEeCC--CeEEEEECCCcEEEEeCCCCCccCCCCCCCccCceeeec
Q 017198 127 CGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGP--SYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQT 204 (375)
Q Consensus 127 ~G~n~~g~lg~~~~~~~~~p~~~~~~~~~~~i~~i~~g~--~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~p~~i~~ 204 (375)
|-...... ...+.. ....|..++... .+.+.-..+|.|..|-...... ...+.
T Consensus 134 wd~~~~~~-----------~~~~~~--~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~-----------~~~~~- 188 (312)
T 4ery_A 134 WDVKTGKC-----------LKTLPA--HSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQC-----------LKTLI- 188 (312)
T ss_dssp EETTTCCE-----------EEEECC--CSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCE-----------EEEEC-
T ss_pred EECCCCEE-----------EEEecC--CCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCce-----------eeEEe-
Confidence 84332110 111111 114576666543 3455556788999996532110 01111
Q ss_pred cccCCccEEEEEc--CCCeEEEEeCCCCEEEEeC
Q 017198 205 FRRKGIHVVRVSA--GDEHVVALDSSGYVYTWGK 236 (375)
Q Consensus 205 ~~~~~~~i~~i~~--g~~~~~~lt~~g~v~~~G~ 236 (375)
......+..++. .....++-+.+|.|..|-.
T Consensus 189 -~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~ 221 (312)
T 4ery_A 189 -DDDNPPVSFVKFSPNGKYILAATLDNTLKLWDY 221 (312)
T ss_dssp -CSSCCCEEEEEECTTSSEEEEEETTTEEEEEET
T ss_pred -ccCCCceEEEEECCCCCEEEEEcCCCeEEEEEC
Confidence 111223444443 3445566678888999864
No 113
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=51.58 E-value=1.2e+02 Score=26.22 Aligned_cols=192 Identities=8% Similarity=-0.011 Sum_probs=98.5
Q ss_pred CEEEEecCC---ceEEEEEcCCcEEEeeCCCCCcccCCCCCCceecCEEccc-cCCcCeEEEEccC---CeEEEEEcCCC
Q 017198 51 HVVQVSASE---NHAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEA-LKGVPCKQVTAGL---NFTGFLTIRGH 123 (375)
Q Consensus 51 ~i~~i~~g~---~~~~~lt~~g~vy~~G~n~~gqlg~~~~~~~~~~p~~i~~-~~~~~i~~v~~g~---~~~~~lt~~g~ 123 (375)
.|..++... ...+.-..||.|..|-..... ....+.. -....|..++... ...+....||.
T Consensus 75 ~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~------------~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~ 142 (383)
T 3ei3_B 75 RVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQN------------KTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGA 142 (383)
T ss_dssp CEEEEEECSSCTTEEEEEEBTSCEEEEETTSTT------------CEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTE
T ss_pred CEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcc------------cceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCE
Confidence 676666554 345555678888888655310 1111111 1233566666543 45555678899
Q ss_pred EEEEeCCCCCcccCCCCCCCCcceeecCC-CCCCCEEEEEeC--CCeEEEEECCCcEEEEeCCCCCccCCCCCCCccCce
Q 017198 124 VHTCGSNTHGQLGHGDTLDRPTPKSIAPL-EEVGSVVQIAAG--PSYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPR 200 (375)
Q Consensus 124 v~~~G~n~~g~lg~~~~~~~~~p~~~~~~-~~~~~i~~i~~g--~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~p~ 200 (375)
|..|-... . ....+... .....|..++.. ..+.+.-..+|.|+.|-... .
T Consensus 143 i~iwd~~~-~-----------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~---------------~ 195 (383)
T 3ei3_B 143 TTLRDFSG-S-----------VIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLDG---------------H 195 (383)
T ss_dssp EEEEETTS-C-----------EEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEETTS---------------C
T ss_pred EEEEECCC-C-----------ceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEECCC---------------C
Confidence 99995431 0 11111111 111345555543 34555567888999986521 1
Q ss_pred eeeccccCCccEEEEEcCCC---eEEEEeCCCCEEEEeCCCCCCCCCCCCCCcccCeeccCCCCCceEEEEecC---CcE
Q 017198 201 AIQTFRRKGIHVVRVSAGDE---HVVALDSSGYVYTWGKGYCGALGHGDEIDKTLPEPLSSLKSHLAVQVCARK---RKT 274 (375)
Q Consensus 201 ~i~~~~~~~~~i~~i~~g~~---~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~p~~i~~~~~~~i~~i~~g~---~~~ 274 (375)
.+..+......|..++.... ..+.-..+|.|..|-....... ..+.... .....|..++... ...
T Consensus 196 ~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~--------~~~~~~~-~~~~~v~~~~~s~~~~~~l 266 (383)
T 3ei3_B 196 EIFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDK--------NSYIAEM-PHEKPVNAAYFNPTDSTKL 266 (383)
T ss_dssp EEEEEECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCST--------TCEEEEE-ECSSCEEEEEECTTTSCEE
T ss_pred EEEEeccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcc--------cceEEEe-cCCCceEEEEEcCCCCCEE
Confidence 12222223335666666544 3444567888998865321100 0011111 1233566666543 444
Q ss_pred EEEEcCCcEEEEeCCC
Q 017198 275 FVLVDTGSVYGFGWMG 290 (375)
Q Consensus 275 ~~l~~~g~vy~~G~n~ 290 (375)
+.-..+|.|+.|-...
T Consensus 267 ~~~~~d~~i~iwd~~~ 282 (383)
T 3ei3_B 267 LTTDQRNEIRVYSSYD 282 (383)
T ss_dssp EEEESSSEEEEEETTB
T ss_pred EEEcCCCcEEEEECCC
Confidence 4556789999997543
No 114
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=50.40 E-value=1.4e+02 Score=26.68 Aligned_cols=134 Identities=7% Similarity=0.005 Sum_probs=62.8
Q ss_pred eeeecCCCCCCEEEEecC---------CceEEEEEcCCc-EEEeeCCCCCcccCCCCCCceecCEEccccCCcCeEEEEc
Q 017198 41 FTRINFPSAAHVVQVSAS---------ENHAAFVLQSGQ-VFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTA 110 (375)
Q Consensus 41 ~~~~~~~~~~~i~~i~~g---------~~~~~~lt~~g~-vy~~G~n~~gqlg~~~~~~~~~~p~~i~~~~~~~i~~v~~ 110 (375)
-..+.......+..|..+ .-+.+.++.||+ +|+......+.+..-+..... .-..+.. .+. ......
T Consensus 111 VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~-vv~tI~v-~g~-~~~~P~ 187 (386)
T 3sjl_D 111 VEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKA-FKRMLDV-PDC-YHIFPT 187 (386)
T ss_dssp EEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTE-EEEEEEC-CSE-EEEEEE
T ss_pred EEEEECCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCc-EEEEEEC-CCc-ceeecC
Confidence 445555555566667654 356788998887 787754322222211111100 0011111 111 111233
Q ss_pred cCCeEEEEEcCCCEEEEeCCCCCcccCCCCCCCCcceeecCCCCCCCEEEEEeCCCeEEEEECCCcEEEEeC
Q 017198 111 GLNFTGFLTIRGHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGPSYMLAVTGNGVVYSFGS 182 (375)
Q Consensus 111 g~~~~~~lt~~g~v~~~G~n~~g~lg~~~~~~~~~p~~~~~~~~~~~i~~i~~g~~~~~~lt~~g~v~~~G~ 182 (375)
|....++++.||++........+.+.. .......+...+.+ ... .........++++.+|+||+.-.
T Consensus 188 g~~~~~~~~~DG~~~~v~~~~~g~v~~-~~~~~~~~~~~~~~---~~~-~~~~~dG~~~~vs~~g~V~v~d~ 254 (386)
T 3sjl_D 188 APDTFFMHCRDGSLAKVAFGTEGTPEI-THTEVFHPEDEFLI---NHP-AYSQKAGRLVWPTYTGKIHQIDL 254 (386)
T ss_dssp ETTEEEEEETTSCEEEEECCSSSCCEE-EECCCCSCTTSCBC---SCC-EEETTTTEEEEEBTTSEEEEEEC
T ss_pred CCceeEEECCCCCEEEEECCCCCeEEE-eecceecccccccc---ccc-eeEcCCCcEEEEeCCCEEEEEEC
Confidence 555566889999988886654444311 00000001000000 111 11123445667888899998843
No 115
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=50.38 E-value=1.2e+02 Score=26.09 Aligned_cols=185 Identities=9% Similarity=-0.043 Sum_probs=91.2
Q ss_pred CEEEEecCC--ceEEEEEcCCcEEEeeCCCCCcccCCCCCCceecCEEcccc--CCcCeEEEEccC---CeEEEEEcCCC
Q 017198 51 HVVQVSASE--NHAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEAL--KGVPCKQVTAGL---NFTGFLTIRGH 123 (375)
Q Consensus 51 ~i~~i~~g~--~~~~~lt~~g~vy~~G~n~~gqlg~~~~~~~~~~p~~i~~~--~~~~i~~v~~g~---~~~~~lt~~g~ 123 (375)
.|..|+... .+.+.-..||.|..|-.... +.+..+ ....|..++... ...+.-..||.
T Consensus 129 ~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~---------------~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~ 193 (344)
T 4gqb_B 129 IVSTVSVLSSGTQAVSGSKDICIKVWDLAQQ---------------VVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNR 193 (344)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEETTTT---------------EEEEEECCCSSCEEEEEECSSCTTEEEEEETTSC
T ss_pred CEEEEEECCCCCEEEEEeCCCeEEEEECCCC---------------cEEEEEcCcCCceEEEEecCCCCCceeeeccccc
Confidence 566666543 34444557888888854431 111111 123566665532 23344567899
Q ss_pred EEEEeCCCCCcccCCCCCCCCcceeecCCCCCCCEEEEEeCC---CeEEEEECCCcEEEEeCCCCCccCCCCCCCccCce
Q 017198 124 VHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGP---SYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPR 200 (375)
Q Consensus 124 v~~~G~n~~g~lg~~~~~~~~~p~~~~~~~~~~~i~~i~~g~---~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~p~ 200 (375)
|..|=...... ...+........+..++... ...+.-..+|.|..|-.... .
T Consensus 194 v~iwd~~~~~~-----------~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~--------------~ 248 (344)
T 4gqb_B 194 ILLWDTRCPKP-----------ASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKST--------------S 248 (344)
T ss_dssp EEEEETTSSSC-----------EEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC----------------
T ss_pred cccccccccce-----------eeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCC--------------c
Confidence 99994322111 01111111113466666542 23333467889999954221 1
Q ss_pred eeeccccCCccEEEEEcCCC---eEEEEeCCCCEEEEeCCCCCCCCCCCCCCcccCeeccCCCCCceEEEEec-CCcEEE
Q 017198 201 AIQTFRRKGIHVVRVSAGDE---HVVALDSSGYVYTWGKGYCGALGHGDEIDKTLPEPLSSLKSHLAVQVCAR-KRKTFV 276 (375)
Q Consensus 201 ~i~~~~~~~~~i~~i~~g~~---~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~p~~i~~~~~~~i~~i~~g-~~~~~~ 276 (375)
.+..+......|..++...+ ..+.-..||.|+.|-... +++ .... -....|..++.. +...++
T Consensus 249 ~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~-~~~-----------~~~~-~H~~~V~~v~~sp~~~~ll 315 (344)
T 4gqb_B 249 CVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSL-SEL-----------FRSQ-AHRDFVRDATWSPLNHSLL 315 (344)
T ss_dssp CCEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTC-CEE-----------EEEC-CCSSCEEEEEECSSSTTEE
T ss_pred EEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCC-CcE-----------EEEc-CCCCCEEEEEEeCCCCeEE
Confidence 11222223336777776432 334457899999995421 111 0111 123357777754 222233
Q ss_pred --EEcCCcEEEEeC
Q 017198 277 --LVDTGSVYGFGW 288 (375)
Q Consensus 277 --l~~~g~vy~~G~ 288 (375)
-..||+|..|--
T Consensus 316 as~s~D~~v~~w~v 329 (344)
T 4gqb_B 316 TTVGWDHQVVHHVV 329 (344)
T ss_dssp EEEETTSCEEEEEC
T ss_pred EEEcCCCeEEEEEC
Confidence 347899999963
No 116
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=47.64 E-value=1.2e+02 Score=25.29 Aligned_cols=188 Identities=11% Similarity=0.016 Sum_probs=86.8
Q ss_pred CEEEEecC--CceEEEEEcCCcEEEeeCCCCCcccCCCCCCceecCEEccccCCcCeEEEEccCCeEEEEEcCCCEEEEe
Q 017198 51 HVVQVSAS--ENHAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGLNFTGFLTIRGHVHTCG 128 (375)
Q Consensus 51 ~i~~i~~g--~~~~~~lt~~g~vy~~G~n~~gqlg~~~~~~~~~~p~~i~~~~~~~i~~v~~g~~~~~~lt~~g~v~~~G 128 (375)
.|..++.. ....+.-..|+.++.|-...... .......................+.-..|+.+..|-
T Consensus 88 ~V~~~~~s~dg~~l~s~~~d~~i~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d 156 (340)
T 4aow_A 88 FVSDVVISSDGQFALSGSWDGTLRLWDLTTGTT-----------TRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWN 156 (340)
T ss_dssp CEEEEEECTTSSEEEEEETTSEEEEEETTTTEE-----------EEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred CEEEEEECCCCCEEEEEcccccceEEeecccce-----------eeeecCCCCceeEEEEeecCccceeecCCCeEEEEE
Confidence 56665544 34445556778888875544211 111111111111222233334445567788888883
Q ss_pred CCCCCcccCCCCCCCCcceeecCCCCCCCEEEEEeCC----CeEEEEECCCcEEEEeCCCCCccCCCCCCCccCceeeec
Q 017198 129 SNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGP----SYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQT 204 (375)
Q Consensus 129 ~n~~g~lg~~~~~~~~~p~~~~~~~~~~~i~~i~~g~----~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~p~~i~~ 204 (375)
..... +...........+..++... ...+.-..++.|..|-... ...+..
T Consensus 157 ~~~~~------------~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~--------------~~~~~~ 210 (340)
T 4aow_A 157 TLGVC------------KYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLAN--------------CKLKTN 210 (340)
T ss_dssp TTSCE------------EEEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTT--------------TEEEEE
T ss_pred eCCCc------------eEEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCC--------------CceeeE
Confidence 32111 11111111113455444322 2233445778888885422 112222
Q ss_pred cccCCccEEEEEcCCC--eEEEEeCCCCEEEEeCCCCCCCCCCCCCCcccCeeccCCCCCceEEEEec-CCcEEEEEcCC
Q 017198 205 FRRKGIHVVRVSAGDE--HVVALDSSGYVYTWGKGYCGALGHGDEIDKTLPEPLSSLKSHLAVQVCAR-KRKTFVLVDTG 281 (375)
Q Consensus 205 ~~~~~~~i~~i~~g~~--~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~p~~i~~~~~~~i~~i~~g-~~~~~~l~~~g 281 (375)
+......|..++...+ ..+.-..||.|..|-.....++ ..+.. ...+..++.. +...++...++
T Consensus 211 ~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~-----------~~~~~--~~~v~~~~~~~~~~~~~~~~d~ 277 (340)
T 4aow_A 211 HIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHL-----------YTLDG--GDIINALCFSPNRYWLCAATGP 277 (340)
T ss_dssp ECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEE-----------EEEEC--SSCEEEEEECSSSSEEEEEETT
T ss_pred ecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCcee-----------eeecC--CceEEeeecCCCCceeeccCCC
Confidence 2222335666655433 3344467888888864321111 11111 1234444333 34555666788
Q ss_pred cEEEEeC
Q 017198 282 SVYGFGW 288 (375)
Q Consensus 282 ~vy~~G~ 288 (375)
.|+.|-.
T Consensus 278 ~i~iwd~ 284 (340)
T 4aow_A 278 SIKIWDL 284 (340)
T ss_dssp EEEEEET
T ss_pred EEEEEEC
Confidence 8988864
No 117
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=47.47 E-value=1.3e+02 Score=25.68 Aligned_cols=258 Identities=13% Similarity=0.052 Sum_probs=124.1
Q ss_pred ceEEEEEcCCcEEEeeCCCCCcccCCCCCCceecCEEccccCCcCe--EEEEccCCeEEEEEcCCCEEEEeCCCCCcccC
Q 017198 60 NHAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPC--KQVTAGLNFTGFLTIRGHVHTCGSNTHGQLGH 137 (375)
Q Consensus 60 ~~~~~lt~~g~vy~~G~n~~gqlg~~~~~~~~~~p~~i~~~~~~~i--~~v~~g~~~~~~lt~~g~v~~~G~n~~g~lg~ 137 (375)
...+++|++|.+--.-...+.....+. .-...+...++..+ ..++.+..+.+++|+.|++|..-..+.-..+.
T Consensus 4 ~~~v~~T~~G~iKr~~~~~~~~~~~~~-----~g~~~~~~ke~D~l~~~~~~~~~~~ll~fT~~G~~~~~~~~elp~~~~ 78 (307)
T 1zi0_A 4 DVVVTLSHQGYVKYQPLSEYEAQRRGG-----KGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQLPEATR 78 (307)
T ss_dssp EEEEEEETTSEEEEEECC-------------------------CCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCCCCS
T ss_pred cEEEEEeCCCEEEEeeHHHhhhhccCC-----CCceeeeeCCCCEEEEEEEECCCCEEEEEECCCEEEEEEhhHCcCCCC
Confidence 456788899887554433321100000 01111111223333 33556788899999999999986654322221
Q ss_pred CCCCCCCcce-eecCCCCCCCEEEEEe-----CCCeEEEEECCCcEEEEeCCCCCccCCCCCCCccCceeeeccccCCcc
Q 017198 138 GDTLDRPTPK-SIAPLEEVGSVVQIAA-----GPSYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIH 211 (375)
Q Consensus 138 ~~~~~~~~p~-~~~~~~~~~~i~~i~~-----g~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~p~~i~~~~~~~~~ 211 (375)
...-.|. .+-.+...++|+.+.. ...+.+++|++|.+.-.-...+.... ........+... -.
T Consensus 79 ---~a~G~~i~~~l~l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~-------r~G~~~i~l~~~-d~ 147 (307)
T 1zi0_A 79 ---GARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLR-------TAGKVAIKLVDG-DE 147 (307)
T ss_dssp ---SSCCEEGGGTSCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGTTCC-------TTCEESSCCCTT-CC
T ss_pred ---CCCCeEhhhccCCCCCCEEEEEEEeccCCCCcEEEEEeCCCeEEEEEHHHhhccc-------cCCeEEEEECCC-CE
Confidence 1111121 1112344477887765 23467888999988776543321110 011111112211 13
Q ss_pred EEEE--EcCCCeEEEEeCCCCEEEEeCCCCCCCCCCCCCCcccCeeccCCCCCceEEEEec--CCcEEEEEcCCcEEEEe
Q 017198 212 VVRV--SAGDEHVVALDSSGYVYTWGKGYCGALGHGDEIDKTLPEPLSSLKSHLAVQVCAR--KRKTFVLVDTGSVYGFG 287 (375)
Q Consensus 212 i~~i--~~g~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~p~~i~~~~~~~i~~i~~g--~~~~~~l~~~g~vy~~G 287 (375)
++.+ ..+..+.+++|++|+++.+-...--.+|...... ..+....+..|+.+..- ....+++++.|..--.-
T Consensus 148 lv~~~~~~~~~~i~l~T~~G~~irf~~~~v~~~gr~a~Gv----~~i~L~~~d~Vv~~~~~~~~~~ll~~T~~G~~Kr~~ 223 (307)
T 1zi0_A 148 LIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGV----RGIRLGEGDKVVSLIVPRGDGAILTATQNGYGKRTA 223 (307)
T ss_dssp EEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCTTCCCE----ECCCCCTTCCEEEEECCCSSCEEEEEETTSEEEEEC
T ss_pred EEEEEEeCCCCEEEEECCCCcEEEEEHHHcCccCCCCCCe----EeEEeCCCCEEEEEEEecCCCEEEEEEcCCceEEEE
Confidence 3332 2356788899999999988765444444322221 12333345567766432 23456667777544433
Q ss_pred CCCCCCCCCCCCCCCCceecceEcCcc--CCCcEEEEEe--CCCceEEEEcCCCEEEeeCCC
Q 017198 288 WMGFGSLGFPDRGVSDKVLRPRILDSL--RAHHVSQIST--GLYHTVVVTDRGRLFGFGDNE 345 (375)
Q Consensus 288 ~n~~gqlg~~~~~~~~~~~~p~~~~~~--~~~~i~~i~~--G~~h~~~l~~~g~v~~wG~n~ 345 (375)
...+-.-+.+. .-.....+ .+..++.+.. .....++++++|.+.-.-.++
T Consensus 224 ~~e~~~~~Rg~--------kG~~~~~~~~~~~~lv~~~~v~~~~~l~~~t~~g~~ir~~~~~ 277 (307)
T 1zi0_A 224 VAEYPTKSRAT--------KGVISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSE 277 (307)
T ss_dssp GGGSCCCCTTS--------CCEESSCCCTTTCSEEEEEEECTTCEEEEEESSCCEEEEEGGG
T ss_pred HHHhccCCCCC--------CCEEeeEecCCCCeEEEEEEeCCCceEEEEcCCCcEEEEeccc
Confidence 22222111111 01111111 1235555443 456678999999987764443
No 118
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=47.05 E-value=1.3e+02 Score=25.20 Aligned_cols=147 Identities=12% Similarity=0.009 Sum_probs=72.9
Q ss_pred CeEEEEcc--CCeEEEEEcCCCEEEEeCCCCCcccCCCCCCCCcceeecCCCCCCCEEEEEe--CCCeEEEEECCCcEEE
Q 017198 104 PCKQVTAG--LNFTGFLTIRGHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAA--GPSYMLAVTGNGVVYS 179 (375)
Q Consensus 104 ~i~~v~~g--~~~~~~lt~~g~v~~~G~n~~g~lg~~~~~~~~~p~~~~~~~~~~~i~~i~~--g~~~~~~lt~~g~v~~ 179 (375)
.|..++.. ....+.-..||.|..|-...... ...+.... ..|..++. ...+.+.-..++.|..
T Consensus 15 ~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~-----------~~~~~~~~--~~v~~~~~~~~~~~l~s~s~d~~i~v 81 (304)
T 2ynn_A 15 RVKGIDFHPTEPWVLTTLYSGRVELWNYETQVE-----------VRSIQVTE--TPVRAGKFIARKNWIIVGSDDFRIRV 81 (304)
T ss_dssp CEEEEEECSSSSEEEEEETTSEEEEEETTTTEE-----------EEEEECCS--SCEEEEEEEGGGTEEEEEETTSEEEE
T ss_pred ceEEEEECCCCCEEEEEcCCCcEEEEECCCCce-----------eEEeeccC--CcEEEEEEeCCCCEEEEECCCCEEEE
Confidence 45555443 33444456788888884332111 11111111 33444443 2345555677889999
Q ss_pred EeCCCCCccCCCCCCCccCceeeeccccCCccEEEEEcCCC--eEEEEeCCCCEEEEeCCCCCCCCCCCCCCcccCeecc
Q 017198 180 FGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGDE--HVVALDSSGYVYTWGKGYCGALGHGDEIDKTLPEPLS 257 (375)
Q Consensus 180 ~G~n~~gqlg~~~~~~~~~p~~i~~~~~~~~~i~~i~~g~~--~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~p~~i~ 257 (375)
|-.... ..+..+......|..++.... ..+.-..||.|..|-..... ......
T Consensus 82 wd~~~~--------------~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~-----------~~~~~~ 136 (304)
T 2ynn_A 82 FNYNTG--------------EKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNW-----------ALEQTF 136 (304)
T ss_dssp EETTTC--------------CEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTT-----------EEEEEE
T ss_pred EECCCC--------------cEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCc-----------chhhhh
Confidence 965321 112222223335766666544 34444688999998642110 011111
Q ss_pred CCCCCceEEEEecC---CcEEEEEcCCcEEEEeC
Q 017198 258 SLKSHLAVQVCARK---RKTFVLVDTGSVYGFGW 288 (375)
Q Consensus 258 ~~~~~~i~~i~~g~---~~~~~l~~~g~vy~~G~ 288 (375)
......|..++... ...+.-..||.|..|-.
T Consensus 137 ~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~ 170 (304)
T 2ynn_A 137 EGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSL 170 (304)
T ss_dssp CCCCSCEEEEEECTTCTTEEEEEETTSEEEEEET
T ss_pred cccCCcEEEEEECCCCCCEEEEEeCCCeEEEEEC
Confidence 12233466666542 23344467889999974
No 119
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=46.74 E-value=45 Score=29.00 Aligned_cols=18 Identities=17% Similarity=0.266 Sum_probs=13.1
Q ss_pred CCeEEEEEcCCCEEEEeCC
Q 017198 112 LNFTGFLTIRGHVHTCGSN 130 (375)
Q Consensus 112 ~~~~~~lt~~g~v~~~G~n 130 (375)
..|++++ -+++||++|-.
T Consensus 110 ~~~~~~~-~~~~iyv~GG~ 127 (357)
T 2uvk_A 110 AGHVTFV-HNGKAYVTGGV 127 (357)
T ss_dssp SSEEEEE-ETTEEEEEECC
T ss_pred ccceEEE-ECCEEEEEeCc
Confidence 3455555 78999999964
No 120
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=45.58 E-value=1.3e+02 Score=25.01 Aligned_cols=14 Identities=0% Similarity=0.116 Sum_probs=9.3
Q ss_pred CeeEEE-eCCcEEEE
Q 017198 8 YHTLLI-SNSSVFSC 21 (375)
Q Consensus 8 ~~~~~l-~~g~l~~w 21 (375)
-|.+.+ .+|++++.
T Consensus 39 ~~~~~~~pdG~ilvs 53 (276)
T 3no2_A 39 CNSVAATKAGEILFS 53 (276)
T ss_dssp CCEEEECTTSCEEEE
T ss_pred CcCeEECCCCCEEEe
Confidence 456666 77777774
No 121
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=43.44 E-value=1.4e+02 Score=24.77 Aligned_cols=187 Identities=10% Similarity=0.020 Sum_probs=92.5
Q ss_pred CEEEEecCC--ceEEEEEcCCcEEEeeCCCCCcccCCCCCCceecCEEccccCCcCeEEEEcc--CCeEEEEEcCCCEEE
Q 017198 51 HVVQVSASE--NHAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAG--LNFTGFLTIRGHVHT 126 (375)
Q Consensus 51 ~i~~i~~g~--~~~~~lt~~g~vy~~G~n~~gqlg~~~~~~~~~~p~~i~~~~~~~i~~v~~g--~~~~~~lt~~g~v~~ 126 (375)
.|..++... ...+.-..||.+..|....... ...+. .....|..++.. ....+.-..||.|..
T Consensus 25 ~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~------------~~~~~-~h~~~v~~~~~~~~~~~l~s~~~d~~i~v 91 (312)
T 4ery_A 25 AVSSVKFSPNGEWLASSSADKLIKIWGAYDGKF------------EKTIS-GHKLGISDVAWSSDSNLLVSASDDKTLKI 91 (312)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEETTTCCE------------EEEEC-CCSSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred cEEEEEECCCCCEEEEeeCCCeEEEEeCCCccc------------chhhc-cCCCceEEEEEcCCCCEEEEECCCCEEEE
Confidence 666666543 3445556788999996544110 11111 112245555543 344555667888888
Q ss_pred EeCCCCCcccCCCCCCCCcceeecCCCCCCCEEEEEeCC--CeEEEEECCCcEEEEeCCCCCccCCCCCCCccCceeeec
Q 017198 127 CGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGP--SYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQT 204 (375)
Q Consensus 127 ~G~n~~g~lg~~~~~~~~~p~~~~~~~~~~~i~~i~~g~--~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~p~~i~~ 204 (375)
|-...... ...+... ...|..++... .+.+.-..++.|..|-.... ..+..
T Consensus 92 wd~~~~~~-----------~~~~~~~--~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~--------------~~~~~ 144 (312)
T 4ery_A 92 WDVSSGKC-----------LKTLKGH--SNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTG--------------KCLKT 144 (312)
T ss_dssp EETTTCCE-----------EEEEECC--SSCEEEEEECSSSSEEEEEETTSCEEEEETTTC--------------CEEEE
T ss_pred EECCCCcE-----------EEEEcCC--CCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCC--------------EEEEE
Confidence 85432111 1111111 13465555543 34455567889999964321 11222
Q ss_pred cccCCccEEEEEcCC--CeEEEEeCCCCEEEEeCCCCCCCCCCCCCCcccCeeccCCCCCceEEEEec--CCcEEEEEcC
Q 017198 205 FRRKGIHVVRVSAGD--EHVVALDSSGYVYTWGKGYCGALGHGDEIDKTLPEPLSSLKSHLAVQVCAR--KRKTFVLVDT 280 (375)
Q Consensus 205 ~~~~~~~i~~i~~g~--~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~p~~i~~~~~~~i~~i~~g--~~~~~~l~~~ 280 (375)
+......|..++... ...+.-..+|.|..|-..... ....+.......+..++.. ....++-..+
T Consensus 145 ~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d 213 (312)
T 4ery_A 145 LPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ-----------CLKTLIDDDNPPVSFVKFSPNGKYILAATLD 213 (312)
T ss_dssp ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCC-----------EEEEECCSSCCCEEEEEECTTSSEEEEEETT
T ss_pred ecCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCc-----------eeeEEeccCCCceEEEEECCCCCEEEEEcCC
Confidence 222233565555433 344455678888888643211 0111111122234444433 3445555678
Q ss_pred CcEEEEeC
Q 017198 281 GSVYGFGW 288 (375)
Q Consensus 281 g~vy~~G~ 288 (375)
|.|..|-.
T Consensus 214 ~~i~iwd~ 221 (312)
T 4ery_A 214 NTLKLWDY 221 (312)
T ss_dssp TEEEEEET
T ss_pred CeEEEEEC
Confidence 88998864
No 122
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=41.86 E-value=1.7e+02 Score=25.18 Aligned_cols=235 Identities=11% Similarity=0.019 Sum_probs=105.9
Q ss_pred eeEEE-eCCcEEEEeCCCCCccCCCCCCCeeeeeeeecCCCCCCEEEEecCCceEEEE-EcCCcEEEeeCCCCCcccCCC
Q 017198 9 HTLLI-SNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSASENHAAFV-LQSGQVFTCGDNSSFCCGHRD 86 (375)
Q Consensus 9 ~~~~l-~~g~l~~wG~n~~g~Lg~~~~~~~~~~~~~~~~~~~~~i~~i~~g~~~~~~l-t~~g~vy~~G~n~~gqlg~~~ 86 (375)
.++.. .||++++.|....-. +-+... ........+. ...++.+.......++. ..|+.|..|-.....
T Consensus 23 ~~v~fs~dg~~la~g~~~~~~--iw~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~d~~v~iWd~~~~~------ 92 (355)
T 3vu4_A 23 TDYEFNQDQSCLILSTLKSFE--IYNVHP-VAHIMSQEMR-HLSKVRMLHRTNYVAFVTGVKEVVHIWDDVKKQ------ 92 (355)
T ss_dssp CEEEECTTSSEEEEECSSEEE--EEEETT-EEEEEEEECS-CCCEEEECTTSSEEEEECSSTTEEEEEETTTTE------
T ss_pred EEEEECCCCCEEEEEcCCEEE--EEecCC-cceeeeeecC-CeEEEEEcCCCCEEEEEECCccEEEEEECCCCc------
Confidence 35666 888888888654111 111111 0111111111 12444444333333222 235678888544311
Q ss_pred CCCceecCEEccccCCcCeEEEEccCCeEEEEEcCCCEEEEeCCCCCcccCCCCCCCCcceeecCCCCCCCEEEEEeCCC
Q 017198 87 TNRPIFRPRLVEALKGVPCKQVTAGLNFTGFLTIRGHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGPS 166 (375)
Q Consensus 87 ~~~~~~~p~~i~~~~~~~i~~v~~g~~~~~~lt~~g~v~~~G~n~~g~lg~~~~~~~~~p~~~~~~~~~~~i~~i~~g~~ 166 (375)
....+.. ...|..+.......++ ..++.++.|-..... ..+..+.....+..++. .
T Consensus 93 ------~~~~~~~--~~~v~~v~~~~~~~~~-~~~~~i~i~d~~~~~-------------~~~~~~~~~~~~~~~s~--~ 148 (355)
T 3vu4_A 93 ------DVSRIKV--DAPVKDLFLSREFIVV-SYGDVISVFKFGNPW-------------KRITDDIRFGGVCEFSN--G 148 (355)
T ss_dssp ------EEEEEEC--SSCEEEEEECSSEEEE-EETTEEEEEESSTTC-------------CBSSCCEEEEEEEEEET--T
T ss_pred ------EEEEEEC--CCceEEEEEcCCEEEE-EEcCEEEEEECCCCc-------------eeeEEeccCCceEEEEc--c
Confidence 0111221 2267777776665444 458889999544320 11111110123334433 3
Q ss_pred eEEEE--ECCCcEEEEeCCCCCccCCCCC---CCccCceeeeccccCCccEEEEEcCCCe--EEEEeCCCC-EEEEeCCC
Q 017198 167 YMLAV--TGNGVVYSFGSGSNFCLGHGEQ---HDELQPRAIQTFRRKGIHVVRVSAGDEH--VVALDSSGY-VYTWGKGY 238 (375)
Q Consensus 167 ~~~~l--t~~g~v~~~G~n~~gqlg~~~~---~~~~~p~~i~~~~~~~~~i~~i~~g~~~--~~~lt~~g~-v~~~G~n~ 238 (375)
+.++. ..+|.|..|-.....+...... .....|. +..+......|..++...+. .+.-..||. |..|-...
T Consensus 149 ~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~-~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~ 227 (355)
T 3vu4_A 149 LLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGK-GVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTED 227 (355)
T ss_dssp EEEEEESSCTTCEEEEECCC------------------C-CEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTT
T ss_pred EEEEeCCCcCcEEEEEECCCCCccccccccccccccCcc-cEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCC
Confidence 33332 5789999997654321110000 0001120 22223334467777665543 333467887 88886532
Q ss_pred CCCCCCCCCCCcccCeecc-CCCCCceEEEEecC--CcEEEEEcCCcEEEEeCC
Q 017198 239 CGALGHGDEIDKTLPEPLS-SLKSHLAVQVCARK--RKTFVLVDTGSVYGFGWM 289 (375)
Q Consensus 239 ~gqlg~~~~~~~~~p~~i~-~~~~~~i~~i~~g~--~~~~~l~~~g~vy~~G~n 289 (375)
... ...+. ......|..++... .+.+.-..|+.|..|--.
T Consensus 228 ~~~-----------~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~ 270 (355)
T 3vu4_A 228 GVL-----------VREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIF 270 (355)
T ss_dssp CCE-----------EEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESS
T ss_pred CcE-----------EEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEcc
Confidence 111 11122 11334577766553 334445678999999754
No 123
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=41.64 E-value=1.6e+02 Score=24.93 Aligned_cols=246 Identities=8% Similarity=-0.098 Sum_probs=112.5
Q ss_pred CEEEEecC--CceEEEEEcCCcEEEeeCCCCCcccCCCCCCceecCEEccccCCcCeEEEEcc--CCeEEEEEcCCCEEE
Q 017198 51 HVVQVSAS--ENHAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAG--LNFTGFLTIRGHVHT 126 (375)
Q Consensus 51 ~i~~i~~g--~~~~~~lt~~g~vy~~G~n~~gqlg~~~~~~~~~~p~~i~~~~~~~i~~v~~g--~~~~~~lt~~g~v~~ 126 (375)
+|..++.. ....+.-..||.|+.|-..... ......+.. ....|..++.. ....+....+|.|..
T Consensus 10 ~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~----------~~~~~~~~~-h~~~v~~~~~~~~~~~l~~~~~dg~i~v 78 (372)
T 1k8k_C 10 PISCHAWNKDRTQIAICPNNHEVHIYEKSGNK----------WVQVHELKE-HNGQVTGVDWAPDSNRIVTCGTDRNAYV 78 (372)
T ss_dssp CCCEEEECTTSSEEEEECSSSEEEEEEEETTE----------EEEEEEEEC-CSSCEEEEEEETTTTEEEEEETTSCEEE
T ss_pred CeEEEEECCCCCEEEEEeCCCEEEEEeCCCCc----------EEeeeeecC-CCCcccEEEEeCCCCEEEEEcCCCeEEE
Confidence 45455443 3334444468888888543310 001111111 12245555443 445555677888888
Q ss_pred EeCCCCCcccCCCCCCCCcceeecCCCCCCCEEEEEeCC--CeEEEEECCCcEEEEeCCCCCccCCCCCCCccCceeeec
Q 017198 127 CGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGP--SYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQT 204 (375)
Q Consensus 127 ~G~n~~g~lg~~~~~~~~~p~~~~~~~~~~~i~~i~~g~--~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~p~~i~~ 204 (375)
|-..... ..+. .........|..++... .+.+.-..+|.|+.|-...... ......+.
T Consensus 79 wd~~~~~----------~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~--------~~~~~~~~- 138 (372)
T 1k8k_C 79 WTLKGRT----------WKPT-LVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQEND--------WWVCKHIK- 138 (372)
T ss_dssp EEEETTE----------EEEE-EECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTT--------EEEEEEEC-
T ss_pred EECCCCe----------eeee-EEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCc--------ceeeeeee-
Confidence 8432110 0011 11111125677777653 3455556788888885432110 00011111
Q ss_pred cccCCccEEEEEcCC--CeEEEEeCCCCEEEEeCCCCCCCCCCCCC-----CcccCeeccCC--CCCceEEEEecC--Cc
Q 017198 205 FRRKGIHVVRVSAGD--EHVVALDSSGYVYTWGKGYCGALGHGDEI-----DKTLPEPLSSL--KSHLAVQVCARK--RK 273 (375)
Q Consensus 205 ~~~~~~~i~~i~~g~--~~~~~lt~~g~v~~~G~n~~gqlg~~~~~-----~~~~p~~i~~~--~~~~i~~i~~g~--~~ 273 (375)
......|..++... ...+.-..+|.|+.|-..... +...... .......+..+ ....|..++... .+
T Consensus 139 -~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 216 (372)
T 1k8k_C 139 -KPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKE-VEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSR 216 (372)
T ss_dssp -TTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTT-TSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSE
T ss_pred -cccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEccccc-ccccccccccccccchhhheEecCCCCCeEEEEEECCCCCE
Confidence 11223566666543 344455788999999743211 0000000 00011112111 233466665533 34
Q ss_pred EEEEEcCCcEEEEeCCCCCCCCCCCCCCCCceecceEcCccCCCcEEEEEeC-CCceEEEEcCCCEEEeeCC
Q 017198 274 TFVLVDTGSVYGFGWMGFGSLGFPDRGVSDKVLRPRILDSLRAHHVSQISTG-LYHTVVVTDRGRLFGFGDN 344 (375)
Q Consensus 274 ~~~l~~~g~vy~~G~n~~gqlg~~~~~~~~~~~~p~~~~~~~~~~i~~i~~G-~~h~~~l~~~g~v~~wG~n 344 (375)
.+.-..+|.|+.|-...... ...+. .....|..++.. +...++...+|.|+.|-..
T Consensus 217 l~~~~~d~~i~i~d~~~~~~--------------~~~~~-~~~~~v~~~~~~~~~~~l~~~~d~~i~i~~~~ 273 (372)
T 1k8k_C 217 VAWVSHDSTVCLADADKKMA--------------VATLA-SETLPLLAVTFITESSLVAAGHDCFPVLFTYD 273 (372)
T ss_dssp EEEEETTTEEEEEEGGGTTE--------------EEEEE-CSSCCEEEEEEEETTEEEEEETTSSCEEEEEE
T ss_pred EEEEeCCCEEEEEECCCCce--------------eEEEc-cCCCCeEEEEEecCCCEEEEEeCCeEEEEEcc
Confidence 44556788888886432110 01111 112245555543 3345556678888888543
No 124
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=41.51 E-value=51 Score=28.07 Aligned_cols=17 Identities=6% Similarity=0.114 Sum_probs=12.5
Q ss_pred CeeEEEeCCcEEEEeCC
Q 017198 8 YHTLLISNSSVFSCGSS 24 (375)
Q Consensus 8 ~~~~~l~~g~l~~wG~n 24 (375)
.|+++.-+++||++|-.
T Consensus 102 ~~~~~~~~~~iyv~GG~ 118 (318)
T 2woz_A 102 LFGLGEVDDKIYVVAGK 118 (318)
T ss_dssp SCEEEEETTEEEEEEEE
T ss_pred ccceEEECCEEEEEcCc
Confidence 45555578999999953
No 125
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=39.89 E-value=1.9e+02 Score=25.28 Aligned_cols=26 Identities=8% Similarity=0.093 Sum_probs=13.3
Q ss_pred CEEEEEeCCC--eEEEE-ECCCcEEEEeC
Q 017198 157 SVVQIAAGPS--YMLAV-TGNGVVYSFGS 182 (375)
Q Consensus 157 ~i~~i~~g~~--~~~~l-t~~g~v~~~G~ 182 (375)
.+..++...+ +.++. ..++.|+.|-.
T Consensus 304 ~~~~~~~~~~g~~l~~~~~~~~~v~v~d~ 332 (433)
T 3bws_A 304 NKRHIVSGNTENKIYVSDMCCSKIEVYDL 332 (433)
T ss_dssp CEEEEEECSSTTEEEEEETTTTEEEEEET
T ss_pred CcceEEECCCCCEEEEEecCCCEEEEEEC
Confidence 4455554432 22222 45677777754
No 126
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=39.19 E-value=3.4e+02 Score=28.02 Aligned_cols=106 Identities=9% Similarity=0.001 Sum_probs=55.9
Q ss_pred CEEEEecC--CceEEEEEcCCcEEEeeCCCCCcccCCCCCCceecCEEccccCCcCeEEEEccC--C--eEEEEEcCCCE
Q 017198 51 HVVQVSAS--ENHAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGL--N--FTGFLTIRGHV 124 (375)
Q Consensus 51 ~i~~i~~g--~~~~~~lt~~g~vy~~G~n~~gqlg~~~~~~~~~~p~~i~~~~~~~i~~v~~g~--~--~~~~lt~~g~v 124 (375)
.|..++.. ....+.-..||.|.+|-...... ...+. .....|..++... . ..+.-..+|.|
T Consensus 659 ~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~------------~~~~~-~~~~~v~~~~~~~~~~~~~l~sg~~d~~v 725 (1249)
T 3sfz_A 659 EVLCCAFSSDDSYIATCSADKKVKIWDSATGKL------------VHTYD-EHSEQVNCCHFTNKSNHLLLATGSNDFFL 725 (1249)
T ss_dssp CEEEEEECTTSSEEEEEETTSEEEEEETTTCCE------------EEEEE-CCSSCEEEEEECSSSSCCEEEEEETTSCE
T ss_pred CEEEEEEecCCCEEEEEeCCCeEEEEECCCCce------------EEEEc-CCCCcEEEEEEecCCCceEEEEEeCCCeE
Confidence 66666654 34555566789999996544110 01111 1122455555432 2 23345678899
Q ss_pred EEEeCCCCCcccCCCCCCCCcceeecCCCCCCCEEEEEeCC--CeEEEEECCCcEEEEeC
Q 017198 125 HTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGP--SYMLAVTGNGVVYSFGS 182 (375)
Q Consensus 125 ~~~G~n~~g~lg~~~~~~~~~p~~~~~~~~~~~i~~i~~g~--~~~~~lt~~g~v~~~G~ 182 (375)
..|-......+ ..+.. ....|..++... ...+....+|.|..|-.
T Consensus 726 ~vwd~~~~~~~-----------~~~~~--h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~ 772 (1249)
T 3sfz_A 726 KLWDLNQKECR-----------NTMFG--HTNSVNHCRFSPDDELLASCSADGTLRLWDV 772 (1249)
T ss_dssp EEEETTSSSEE-----------EEECC--CSSCEEEEEECSSTTEEEEEESSSEEEEEEG
T ss_pred EEEECCCcchh-----------heecC--CCCCEEEEEEecCCCEEEEEECCCeEEEEeC
Confidence 99954322111 11111 114566666543 45556678899999965
No 127
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=38.95 E-value=1.9e+02 Score=24.89 Aligned_cols=12 Identities=8% Similarity=-0.332 Sum_probs=8.3
Q ss_pred EcCCcEEEEeCC
Q 017198 278 VDTGSVYGFGWM 289 (375)
Q Consensus 278 ~~~g~vy~~G~n 289 (375)
..+++|+.|-..
T Consensus 263 ~~d~~v~v~d~~ 274 (391)
T 1l0q_A 263 SFXNTVSVIDTA 274 (391)
T ss_dssp TTTTEEEEEETT
T ss_pred CCCCEEEEEECC
Confidence 457888888754
No 128
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=38.70 E-value=1.9e+02 Score=24.85 Aligned_cols=150 Identities=9% Similarity=-0.024 Sum_probs=79.6
Q ss_pred CCEEEEecCC---ceEEEEEcCCcEEEeeCCCCCcccCCCCCCceecCEEccccC--CcCeEEEE--ccCCeEEEEEcCC
Q 017198 50 AHVVQVSASE---NHAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALK--GVPCKQVT--AGLNFTGFLTIRG 122 (375)
Q Consensus 50 ~~i~~i~~g~---~~~~~lt~~g~vy~~G~n~~gqlg~~~~~~~~~~p~~i~~~~--~~~i~~v~--~g~~~~~~lt~~g 122 (375)
..|..++... ...+.-..||.|..|-... .. ...+.... ...|..++ ......+.-+.+|
T Consensus 119 ~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~-~~------------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~ 185 (383)
T 3ei3_B 119 DAITGMKFNQFNTNQLFVSSIRGATTLRDFSG-SV------------IQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTG 185 (383)
T ss_dssp CBEEEEEEETTEEEEEEEEETTTEEEEEETTS-CE------------EEEEECCCCSSCCEEEEEEETTTTEEEEEETTS
T ss_pred CceeEEEeCCCCCCEEEEEeCCCEEEEEECCC-Cc------------eEEEeccCCCCCCeEEEEECCCCCEEEEECCCC
Confidence 3777777644 4555566789999996542 10 11111111 12344443 3445566667888
Q ss_pred CEEEEeCCCCCcccCCCCCCCCcceeecCCCCCCCEEEEEeCCC---eEEEEECCCcEEEEeCCCCCccCCCCCCCccCc
Q 017198 123 HVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGPS---YMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQP 199 (375)
Q Consensus 123 ~v~~~G~n~~g~lg~~~~~~~~~p~~~~~~~~~~~i~~i~~g~~---~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~p 199 (375)
.|+.|-.. + .....+.. ....|..++.... ..+.-..++.|..|-..... ...
T Consensus 186 ~i~i~d~~--~----------~~~~~~~~--h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~----------~~~ 241 (383)
T 3ei3_B 186 RLLLLGLD--G----------HEIFKEKL--HKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIK----------DKN 241 (383)
T ss_dssp EEEEEETT--S----------CEEEEEEC--SSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCC----------STT
T ss_pred CEEEEECC--C----------CEEEEecc--CCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCC----------ccc
Confidence 89888542 1 01111111 1156777776654 45555678899999653311 001
Q ss_pred eeeeccccCCccEEEEEcCC---CeEEEEeCCCCEEEEeCC
Q 017198 200 RAIQTFRRKGIHVVRVSAGD---EHVVALDSSGYVYTWGKG 237 (375)
Q Consensus 200 ~~i~~~~~~~~~i~~i~~g~---~~~~~lt~~g~v~~~G~n 237 (375)
..+..+. ....|..++... ...+....+|.|..|-..
T Consensus 242 ~~~~~~~-~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~ 281 (383)
T 3ei3_B 242 SYIAEMP-HEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSY 281 (383)
T ss_dssp CEEEEEE-CSSCEEEEEECTTTSCEEEEEESSSEEEEEETT
T ss_pred ceEEEec-CCCceEEEEEcCCCCCEEEEEcCCCcEEEEECC
Confidence 1111111 233577776654 445556778999999754
No 129
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=36.50 E-value=1.9e+02 Score=24.12 Aligned_cols=66 Identities=11% Similarity=0.139 Sum_probs=36.3
Q ss_pred CCEEEEEeCC--CeEEEEECCCcEEEEeCCCCCccCCCCCCCccCceeeeccccCCccEEEEEcCC-CeEEEEeCCCCEE
Q 017198 156 GSVVQIAAGP--SYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGD-EHVVALDSSGYVY 232 (375)
Q Consensus 156 ~~i~~i~~g~--~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~p~~i~~~~~~~~~i~~i~~g~-~~~~~lt~~g~v~ 232 (375)
..|..++... .+.+.-..||.|..|-..... .+..+. ....|..+.... ...++...++.|.
T Consensus 216 ~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~--------------~~~~~~-~~~~v~~~~~~~~~~~~~~~~d~~i~ 280 (340)
T 4aow_A 216 GYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGK--------------HLYTLD-GGDIINALCFSPNRYWLCAATGPSIK 280 (340)
T ss_dssp SCEEEEEECTTSSEEEEEETTCEEEEEETTTTE--------------EEEEEE-CSSCEEEEEECSSSSEEEEEETTEEE
T ss_pred CcEEEEEECCCCCEEEEEeCCCeEEEEEeccCc--------------eeeeec-CCceEEeeecCCCCceeeccCCCEEE
Confidence 4677777654 344445688999999653321 111111 112355544433 3455566788888
Q ss_pred EEeC
Q 017198 233 TWGK 236 (375)
Q Consensus 233 ~~G~ 236 (375)
.|-.
T Consensus 281 iwd~ 284 (340)
T 4aow_A 281 IWDL 284 (340)
T ss_dssp EEET
T ss_pred EEEC
Confidence 8864
No 130
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=33.00 E-value=2.3e+02 Score=24.24 Aligned_cols=50 Identities=8% Similarity=-0.017 Sum_probs=25.2
Q ss_pred eCCcEEEEeCCCCCccCCCCCCCeeeeeeeecCCCCCCEEEEecCCce--EEEEE-cCCcEEEeeCC
Q 017198 14 SNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSASENH--AAFVL-QSGQVFTCGDN 77 (375)
Q Consensus 14 ~~g~l~~wG~n~~g~Lg~~~~~~~~~~~~~~~~~~~~~i~~i~~g~~~--~~~lt-~~g~vy~~G~n 77 (375)
.|+.|++|-... ++ ....+... ..+..++..... .++.. .++.|+.|-..
T Consensus 10 ~d~~v~v~d~~~-~~-----------~~~~~~~~--~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~ 62 (391)
T 1l0q_A 10 ESDNISVIDVTS-NK-----------VTATIPVG--SNPMGAVISPDGTKVYVANAHSNDVSIIDTA 62 (391)
T ss_dssp TTTEEEEEETTT-TE-----------EEEEEECS--SSEEEEEECTTSSEEEEEEGGGTEEEEEETT
T ss_pred CCCEEEEEECCC-Ce-----------EEEEeecC--CCcceEEECCCCCEEEEECCCCCeEEEEECC
Confidence 678899996432 11 11122222 245555554332 22222 57888888543
No 131
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=31.87 E-value=2e+02 Score=23.07 Aligned_cols=12 Identities=17% Similarity=0.050 Sum_probs=6.5
Q ss_pred EEEEEcCCCEEE
Q 017198 115 TGFLTIRGHVHT 126 (375)
Q Consensus 115 ~~~lt~~g~v~~ 126 (375)
.++++.+|++|+
T Consensus 28 ~i~~~~~g~l~v 39 (270)
T 1rwi_B 28 GVAVDSAGNVYV 39 (270)
T ss_dssp EEEECTTCCEEE
T ss_pred ceEECCCCCEEE
Confidence 345555566555
No 132
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=31.19 E-value=2.8e+02 Score=24.52 Aligned_cols=193 Identities=10% Similarity=0.074 Sum_probs=0.0
Q ss_pred CCCEEEEec---CCceEEEEEcCCcEEEeeCCCCCcccCCCCCCceecCEEccccC-CcCeEEEE---ccCCeEEEEEcC
Q 017198 49 AAHVVQVSA---SENHAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALK-GVPCKQVT---AGLNFTGFLTIR 121 (375)
Q Consensus 49 ~~~i~~i~~---g~~~~~~lt~~g~vy~~G~n~~gqlg~~~~~~~~~~p~~i~~~~-~~~i~~v~---~g~~~~~~lt~~ 121 (375)
+.+|..|+. .....+.=..||.|..|-... ...+..+.... ...|..|+ ......+.-..|
T Consensus 119 ~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~------------~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D 186 (435)
T 4e54_B 119 DRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGI------------KDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSME 186 (435)
T ss_dssp SSCEEEEEECSSCTTCEEEEETTSCEEEECSSC------------CSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSS
T ss_pred CCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCC------------CCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCC
Q ss_pred CCEEEEeCCCCCcccCCCCCCCCcceeecCCCCCCCEEEEEeCCCeEEEEECCCcEEEEeCCCCCccCCCCCCCccCcee
Q 017198 122 GHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGPSYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRA 201 (375)
Q Consensus 122 g~v~~~G~n~~g~lg~~~~~~~~~p~~~~~~~~~~~i~~i~~g~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~p~~ 201 (375)
|.|..| .-...................-..+.....+.+.-..+|.|+.| ...-..
T Consensus 187 ~~v~iw---------d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~w---------------d~~~~~ 242 (435)
T 4e54_B 187 GTTRLQ---------DFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILL---------------NMDGKE 242 (435)
T ss_dssp SCEEEE---------ETTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEE---------------ESSSCB
T ss_pred CEEEEe---------eccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeee---------------ccCcce
Q ss_pred eeccccCCccEEEEE---cCCCeEEEEeCCCCEEEEeCCCCCCCCCCCCCCcccCeeccCCCCCceEEEEecCCcEEEEE
Q 017198 202 IQTFRRKGIHVVRVS---AGDEHVVALDSSGYVYTWGKGYCGALGHGDEIDKTLPEPLSSLKSHLAVQVCARKRKTFVLV 278 (375)
Q Consensus 202 i~~~~~~~~~i~~i~---~g~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~p~~i~~~~~~~i~~i~~g~~~~~~l~ 278 (375)
+..+......|..++ .+....+.-..||.|..|-. ..................|..++...+...+++
T Consensus 243 ~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~---------~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s 313 (435)
T 4e54_B 243 LWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDL---------RQVRGKASFLYSLPHRHPVNAACFSPDGARLLT 313 (435)
T ss_dssp CCCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEET---------TTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEE
T ss_pred eEEEecccceEEeeeecCCCceEEEEecCcceeeEEec---------ccccccceEEEeeeccccccceeECCCCCeeEE
Q ss_pred --cCCcEEEE
Q 017198 279 --DTGSVYGF 286 (375)
Q Consensus 279 --~~g~vy~~ 286 (375)
.||.|..|
T Consensus 314 ~~~D~~i~iw 323 (435)
T 4e54_B 314 TDQKSEIRVY 323 (435)
T ss_dssp EESSSCEEEE
T ss_pred EcCCCEEEEE
No 133
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=30.89 E-value=2.9e+02 Score=24.61 Aligned_cols=270 Identities=10% Similarity=0.058 Sum_probs=114.3
Q ss_pred eeecCCCCCCEEEEecCCceEEEEEcCCc-EEEeeCCC-CCcccCCCCCCceecCEEccccCCcCeEEEEcc--------
Q 017198 42 TRINFPSAAHVVQVSASENHAAFVLQSGQ-VFTCGDNS-SFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAG-------- 111 (375)
Q Consensus 42 ~~~~~~~~~~i~~i~~g~~~~~~lt~~g~-vy~~G~n~-~gqlg~~~~~~~~~~p~~i~~~~~~~i~~v~~g-------- 111 (375)
..+.......+..|..|..--++++.||+ +|+..... .+.-|. ....-..+..-....+..|..+
T Consensus 62 ~ViD~~t~~v~~~I~vG~~P~va~spDG~~lyVan~~~~r~~~G~-----~~~~VsviD~~t~~v~~~I~v~~g~r~~~g 136 (386)
T 3sjl_D 62 FVIDGEAGRVIGMIDGGFLPNPVVADDGSFIAHASTVFSRIARGE-----RTDYVEVFDPVTLLPTADIELPDAPRFLVG 136 (386)
T ss_dssp EEEETTTTEEEEEEEECSSCEEEECTTSSCEEEEEEEEEETTEEE-----EEEEEEEECTTTCCEEEEEEETTCCCCCBS
T ss_pred EEEECCCCeEEEEEECCCCCcEEECCCCCEEEEEcccccccccCC-----CCCEEEEEECCCCeEEEEEECCCccccccC
Confidence 34444444456677777655588898887 78764210 000000 0001122222223334555443
Q ss_pred -CCeEEEEEcCCC-EEEEeCCCCCcccCCCCCCCCcceeecCCCCCCCEEEEEeCCCeEEEEECCCcEEEEeCCCCCccC
Q 017198 112 -LNFTGFLTIRGH-VHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGPSYMLAVTGNGVVYSFGSGSNFCLG 189 (375)
Q Consensus 112 -~~~~~~lt~~g~-v~~~G~n~~g~lg~~~~~~~~~p~~~~~~~~~~~i~~i~~g~~~~~~lt~~g~v~~~G~n~~gqlg 189 (375)
.-+.++++.||+ +|+......+.+..-+......-..++.. ....-...|....++++.+|++........+.+.
T Consensus 137 ~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~---g~~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~ 213 (386)
T 3sjl_D 137 TYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVP---DCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPE 213 (386)
T ss_dssp CCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECC---SEEEEEEEETTEEEEEETTSCEEEEECCSSSCCE
T ss_pred CCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECC---CcceeecCCCceeEEECCCCCEEEEECCCCCeEE
Confidence 345688888886 67763321122211111111111111110 1111112355555688889998888764433331
Q ss_pred CCCCCCccCceeeeccccCCccEEEEEcCCCeEEEEeCCCCEEEEeCCCCCCCCCCCCCCcccCeeccCCCC-CceEEEE
Q 017198 190 HGEQHDELQPRAIQTFRRKGIHVVRVSAGDEHVVALDSSGYVYTWGKGYCGALGHGDEIDKTLPEPLSSLKS-HLAVQVC 268 (375)
Q Consensus 190 ~~~~~~~~~p~~i~~~~~~~~~i~~i~~g~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~p~~i~~~~~-~~i~~i~ 268 (375)
... .....|...+.+ . .. .......+.++++.+|+||..-.... ......++..+.. ....-..
T Consensus 214 ~~~-~~~~~~~~~~~~--~--~~-~~~~~dG~~~~vs~~g~V~v~d~~~~---------~~~v~~~~~~~~~~~~~~g~~ 278 (386)
T 3sjl_D 214 ITH-TEVFHPEDEFLI--N--HP-AYSQKAGRLVWPTYTGKIHQIDLSSG---------DAKFLPAVEALTEAERADGWR 278 (386)
T ss_dssp EEE-CCCCSCTTSCBC--S--CC-EEETTTTEEEEEBTTSEEEEEECTTS---------SCEECCCEESSCHHHHHTTEE
T ss_pred Eee-cceecccccccc--c--cc-eeEcCCCcEEEEeCCCEEEEEECCCC---------cceeecceecccccccccccc
Confidence 100 000000000000 0 01 11223445667888899998743110 0000111110000 0000122
Q ss_pred ecCCcEEEEEc-CCcEEEEeCCCCCCCCCCCCCCCCceecceEcCccCCCcEEEEEeCC-CceEEEEcCCC--EEE
Q 017198 269 ARKRKTFVLVD-TGSVYGFGWMGFGSLGFPDRGVSDKVLRPRILDSLRAHHVSQISTGL-YHTVVVTDRGR--LFG 340 (375)
Q Consensus 269 ~g~~~~~~l~~-~g~vy~~G~n~~gqlg~~~~~~~~~~~~p~~~~~~~~~~i~~i~~G~-~h~~~l~~~g~--v~~ 340 (375)
.+....++++. .+++|.--... ++ +.. ......-..+..-....+..|..|. -+.++++.||+ +|+
T Consensus 279 p~g~q~~a~~~~~~~lyV~~~~~-~~---~~h--k~~~~~V~viD~~t~kv~~~i~vg~~~~~lavs~D~~~~ly~ 348 (386)
T 3sjl_D 279 PGGWQQVAYHRALDRIYLLVDQR-DE---WRH--KTASRFVVVLDAKTGERLAKFEMGHEIDSINVSQDEKPLLYA 348 (386)
T ss_dssp ECSSSCEEEETTTTEEEEEEEEC-CT---TCT--TSCEEEEEEEETTTCCEEEEEEEEEEECEEEECSSSSCEEEE
T ss_pred CCCcceeeECCCCCeEEEEeccc-cc---ccc--CCCCCEEEEEECCCCeEEEEEECCCCcceEEECCCCCeEEEE
Confidence 34445556654 45677632110 11 110 1111222233333445667777764 45899999987 566
No 134
>1zvu_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 3.00A {Escherichia coli}
Probab=30.08 E-value=4e+02 Score=26.00 Aligned_cols=163 Identities=12% Similarity=0.064 Sum_probs=81.9
Q ss_pred CCceEEEEEcCCcEEEeeCCCCCcccCCCCCCceecCEEccccCCcCe--EEEEccCCeEEEEEcCCCEEEEeCCCCCcc
Q 017198 58 SENHAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPC--KQVTAGLNFTGFLTIRGHVHTCGSNTHGQL 135 (375)
Q Consensus 58 g~~~~~~lt~~g~vy~~G~n~~gqlg~~~~~~~~~~p~~i~~~~~~~i--~~v~~g~~~~~~lt~~g~v~~~G~n~~g~l 135 (375)
-..-.+.++++|.+-..+....+ +.-+...++..+ ...+....+.+++|+.|++|..-....-..
T Consensus 471 ~e~v~v~ls~~GyiKr~~g~~~~-------------~~~~~~k~~D~~~~~~~~~t~d~ll~ft~~Gr~y~~~~~~lP~~ 537 (716)
T 1zvu_A 471 SEPVTIVLSQMGWVRSAKGHDID-------------APGLNYKAGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSA 537 (716)
T ss_dssp CCCCCEEEETTTEEEECCC----------------------------CCEEECCCSSSCEEEEETTSEEEEECTTTSCCC
T ss_pred CceEEEEEecCCeEeccCCCCcC-------------ccccccCCCCeEEEEEEecCCCEEEEEecCCcEEEEEeeecccc
Confidence 45667888888887654221110 011111122223 233446677889999999998865432211
Q ss_pred cCCCCCCCCcceeecCCCCCCCEEEEEeC--CCeEEEEECCCcEEEEeCCCCCccCCCCCCCccCceeeeccccCCc--c
Q 017198 136 GHGDTLDRPTPKSIAPLEEVGSVVQIAAG--PSYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGI--H 211 (375)
Q Consensus 136 g~~~~~~~~~p~~~~~~~~~~~i~~i~~g--~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~p~~i~~~~~~~~--~ 211 (375)
...-.+....+ .+...++|+.+... ..+.++.|++|.+.-.-...+. ...........+..... .
T Consensus 538 ---~~~G~~i~~ll-~l~~~e~i~~~~~~~~~~~l~~~T~~G~vk~~~l~~~~-------~~~~~g~~ai~L~~~d~lv~ 606 (716)
T 1zvu_A 538 ---RGQGEPLTGKL-TLPPGATVDHMLMESDDQKLLMASDAGYGFVCTFNDLV-------ARNRAGKALITLPENAHVMP 606 (716)
T ss_dssp ---C---CBSTTTS-CCCTTCCEEEEECCCTTCEEEEEBTTSEEEEEEGGGGC-------CCSTTCEECBCCCTTCCBCC
T ss_pred ---cccCeeHHhcc-CCCCCCeEEEEEEecCCceEEEEeCCceEEEecHHHhc-------ccCccceEEEeeCCCCEEEE
Confidence 11111111112 23344788888776 3567788999988876543321 01111111122221111 1
Q ss_pred EEEEEcCCCeEEEEeCCCCEEEEeCCCCCCCCC
Q 017198 212 VVRVSAGDEHVVALDSSGYVYTWGKGYCGALGH 244 (375)
Q Consensus 212 i~~i~~g~~~~~~lt~~g~v~~~G~n~~gqlg~ 244 (375)
+..+..+..+.++++++|++..+-.+.--.+|.
T Consensus 607 ~~~~~~~~~~v~l~t~~g~~lrf~~~~v~~~gr 639 (716)
T 1zvu_A 607 PVVIEDASDMLLAITQAGRMLMFPVSDLPQLSK 639 (716)
T ss_dssp CEECCCTTCEEEEEETTSEEEEEESTTSCBCSS
T ss_pred EEEecCCCCEEEEEeCCCeEEEEEHHHCCccCc
Confidence 112223667888999999999887765444443
No 135
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=28.17 E-value=2.9e+02 Score=23.73 Aligned_cols=16 Identities=6% Similarity=0.214 Sum_probs=12.1
Q ss_pred CCceEEEEcCCCEEEe
Q 017198 326 LYHTVVVTDRGRLFGF 341 (375)
Q Consensus 326 ~~h~~~l~~~g~v~~w 341 (375)
..+.++.+.+|.||+|
T Consensus 359 ~~~l~v~~~~G~l~~~ 374 (376)
T 3q7m_A 359 DGKLLIQAKDGTVYSI 374 (376)
T ss_dssp TTEEEEEBTTSCEEEE
T ss_pred CCEEEEEeCCCEEEEE
Confidence 4566777788889887
No 136
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=27.86 E-value=2.4e+02 Score=22.82 Aligned_cols=18 Identities=6% Similarity=-0.038 Sum_probs=13.2
Q ss_pred CCeeEEE-eCCcEEEEeCC
Q 017198 7 RYHTLLI-SNSSVFSCGSS 24 (375)
Q Consensus 7 ~~~~~~l-~~g~l~~wG~n 24 (375)
.-+.++. .+|++|+-...
T Consensus 21 ~p~~i~~d~~g~l~v~~~~ 39 (300)
T 2qc5_A 21 GPYGITSSEDGKVWFTQHK 39 (300)
T ss_dssp CEEEEEECTTSCEEEEETT
T ss_pred CcceeeECCCCCEEEEcCC
Confidence 4466777 88999997653
No 137
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=27.43 E-value=3.6e+02 Score=24.63 Aligned_cols=181 Identities=14% Similarity=0.092 Sum_probs=86.8
Q ss_pred CEEEEecCC--ceEEEEEcCCcEEEeeCCCCCcccCCCCCCceecCEEccccCCcCeEEEEcc--CCeEEEEEcCCCEEE
Q 017198 51 HVVQVSASE--NHAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAG--LNFTGFLTIRGHVHT 126 (375)
Q Consensus 51 ~i~~i~~g~--~~~~~lt~~g~vy~~G~n~~gqlg~~~~~~~~~~p~~i~~~~~~~i~~v~~g--~~~~~~lt~~g~v~~ 126 (375)
.|..++... ...+..+.|+.++.|-.+. ++ ...+.. ....|..++.. ....+....+|.|..
T Consensus 264 ~v~~v~~~~d~~~l~~~~~d~~i~~w~~~~--~~-----------~~~~~~-h~~~v~~~~~~~~~~~l~t~~~d~~i~~ 329 (577)
T 2ymu_A 264 SVNGVAFRPDGQTIASASDDKTVKLWNRNG--QL-----------LQTLTG-HSSSVWGVAFSPDGQTIASASDDKTVKL 329 (577)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEETTS--CE-----------EEEECC-CSSCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred CEEEEEEcCCCCEEEEEeCCCEEEEEeCCC--cE-----------EEEEec-CCCCeEEEEECCCCCEEEEEeCCCeEEE
Confidence 566666543 3445556788888885332 10 011111 12245555443 334445667888888
Q ss_pred EeCCCCCcccCCCCCCCCcceeecCCCCCCCEEEEEeCC--CeEEEEECCCcEEEEeCCCCCccCCCCCCCccCceeeec
Q 017198 127 CGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGP--SYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQT 204 (375)
Q Consensus 127 ~G~n~~g~lg~~~~~~~~~p~~~~~~~~~~~i~~i~~g~--~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~p~~i~~ 204 (375)
|-.+.. ....+... ...+..++... .+.+.-.++|.+..|-.+. ..+..
T Consensus 330 w~~~~~------------~~~~~~~~--~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~~~---------------~~~~~ 380 (577)
T 2ymu_A 330 WNRNGQ------------HLQTLTGH--SSSVWGVAFSPDGQTIASASDDKTVKLWNRNG---------------QLLQT 380 (577)
T ss_dssp EETTSC------------EEEEECCC--SSCEEEEEECTTSSEEEEEETTSEEEEEETTC---------------CEEEE
T ss_pred EeCCCC------------eeEEEeCC--CCCEEEEEECCCCCEEEEEeCCCEEEEEcCCC---------------CEEEE
Confidence 843211 11111111 14566666543 3444556788888885321 11222
Q ss_pred cccCCccEEEEEcCC--CeEEEEeCCCCEEEEeCCCCCCCCCCCCCCcccCeeccCCCCCceEEEEecC--CcEEEEEcC
Q 017198 205 FRRKGIHVVRVSAGD--EHVVALDSSGYVYTWGKGYCGALGHGDEIDKTLPEPLSSLKSHLAVQVCARK--RKTFVLVDT 280 (375)
Q Consensus 205 ~~~~~~~i~~i~~g~--~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~p~~i~~~~~~~i~~i~~g~--~~~~~l~~~ 280 (375)
+......|..++... ...+.-..++.|..|-.+ +++ ...+. .....|..++... ...+.-..|
T Consensus 381 ~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~~--~~~----------~~~~~-~~~~~v~~~~~s~d~~~l~~~~~d 447 (577)
T 2ymu_A 381 LTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN--GQL----------LQTLT-GHSSSVWGVAFSPDDQTIASASDD 447 (577)
T ss_dssp EECCSSCEEEEEECTTSSCEEEEETTSEEEEECTT--CCE----------EEEEE-CCSSCEEEEEECTTSSEEEEEETT
T ss_pred ecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeCC--CCE----------EEEec-CCCCCeEEEEECCCCCEEEEEcCC
Confidence 222233566665443 334445678888888431 111 01111 1223455555432 223334567
Q ss_pred CcEEEEe
Q 017198 281 GSVYGFG 287 (375)
Q Consensus 281 g~vy~~G 287 (375)
+.|..|-
T Consensus 448 ~~v~~w~ 454 (577)
T 2ymu_A 448 KTVKLWN 454 (577)
T ss_dssp SEEEEEE
T ss_pred CEEEEEE
Confidence 8888885
No 138
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=25.64 E-value=5.2e+02 Score=25.87 Aligned_cols=105 Identities=13% Similarity=0.145 Sum_probs=57.8
Q ss_pred CEEEEecC--CceEEEEEcCCcEEEeeCCCCCcccCCCCCCceecCEEccccCCcCeEEEEcc-CCeEEEEEcCCCEEEE
Q 017198 51 HVVQVSAS--ENHAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAG-LNFTGFLTIRGHVHTC 127 (375)
Q Consensus 51 ~i~~i~~g--~~~~~~lt~~g~vy~~G~n~~gqlg~~~~~~~~~~p~~i~~~~~~~i~~v~~g-~~~~~~lt~~g~v~~~ 127 (375)
.|..|+.. ....+.=+.||.|+.|..... ++ ..... ....|..++.. ..+.+....|+.|..|
T Consensus 19 ~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~-~~-----------~~~~~--~~~~V~~l~fspg~~L~S~s~D~~v~lW 84 (902)
T 2oaj_A 19 KPIAAAFDFTQNLLAIATVTGEVHIYGQQQV-EV-----------VIKLE--DRSAIKEMRFVKGIYLVVINAKDTVYVL 84 (902)
T ss_dssp CEEEEEEETTTTEEEEEETTSEEEEECSTTC-EE-----------EEECS--SCCCEEEEEEETTTEEEEEETTCEEEEE
T ss_pred CcEEEEECCCCCEEEEEeCCCEEEEEeCCCc-EE-----------EEEcC--CCCCEEEEEEcCCCEEEEEECcCeEEEE
Confidence 56665543 344555567899999965431 10 00111 12345555432 2356667889999999
Q ss_pred eCCCCCcccCCCCCCCCcceeecCCCCCCCEEEEEeCC--CeEEEEECCCcEEEEeCC
Q 017198 128 GSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGP--SYMLAVTGNGVVYSFGSG 183 (375)
Q Consensus 128 G~n~~g~lg~~~~~~~~~p~~~~~~~~~~~i~~i~~g~--~~~~~lt~~g~v~~~G~n 183 (375)
-...... +..+.....|..++... .+.+.-..+|.|..|-..
T Consensus 85 d~~~~~~--------------~~~~~~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~ 128 (902)
T 2oaj_A 85 SLYSQKV--------------LTTVFVPGKITSIDTDASLDWMLIGLQNGSMIVYDID 128 (902)
T ss_dssp ETTTCSE--------------EEEEECSSCEEEEECCTTCSEEEEEETTSCEEEEETT
T ss_pred ECCCCcE--------------EEEEcCCCCEEEEEECCCCCEEEEEcCCCcEEEEECC
Confidence 5432111 11111114677777653 444455789999999654
No 139
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=23.99 E-value=3.2e+02 Score=22.90 Aligned_cols=225 Identities=13% Similarity=0.103 Sum_probs=105.0
Q ss_pred CEEEEecCCceEEE--EEcCCcEEEeeCCCCCcccCCCCCCceecCEEccc-cCCcCeEEEEccCCeEEEEEcCCCEEEE
Q 017198 51 HVVQVSASENHAAF--VLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEA-LKGVPCKQVTAGLNFTGFLTIRGHVHTC 127 (375)
Q Consensus 51 ~i~~i~~g~~~~~~--lt~~g~vy~~G~n~~gqlg~~~~~~~~~~p~~i~~-~~~~~i~~v~~g~~~~~~lt~~g~v~~~ 127 (375)
.|..++......++ -..|+.|..|-.....++ ..+.. .........+......+.-+.+|.|..|
T Consensus 82 ~v~~~~~~~~~~~l~s~s~D~~i~lWd~~~~~~~------------~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~ 149 (321)
T 3ow8_A 82 GVVSVDISHTLPIAASSSLDAHIRLWDLENGKQI------------KSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIF 149 (321)
T ss_dssp CEEEEEECSSSSEEEEEETTSEEEEEETTTTEEE------------EEEECCTTCCCCEEECTTSSEEEEECTTSEEEEE
T ss_pred CEEEEEECCCCCEEEEEeCCCcEEEEECCCCCEE------------EEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEE
Confidence 66666665444333 345889999965431111 11110 0111112233333444455667788887
Q ss_pred eCCCCCcccCCCCCCCCcceeecCCCCCCCEEEEEeCC--CeEEEEECCCcEEEEeCCCCCccCCCCCCCccCceeeecc
Q 017198 128 GSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGP--SYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTF 205 (375)
Q Consensus 128 G~n~~g~lg~~~~~~~~~p~~~~~~~~~~~i~~i~~g~--~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~p~~i~~~ 205 (375)
....... ...+.. ....|..++... .+.+.-..+|.|..|-.... ..+..+
T Consensus 150 ~~~~~~~-----------~~~~~~--~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~--------------~~~~~~ 202 (321)
T 3ow8_A 150 GVESGKK-----------EYSLDT--RGKFILSIAYSPDGKYLASGAIDGIINIFDIATG--------------KLLHTL 202 (321)
T ss_dssp ETTTCSE-----------EEEEEC--SSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT--------------EEEEEE
T ss_pred EcCCCce-----------eEEecC--CCceEEEEEECCCCCEEEEEcCCCeEEEEECCCC--------------cEEEEE
Confidence 5432111 111111 114566666553 34444467888888854221 122222
Q ss_pred ccCCccEEEEEcCCC--eEEEEeCCCCEEEEeCCCCCCCCCCCCCCcccCeeccCCCCCceEEEEec--CCcEEEEEcCC
Q 017198 206 RRKGIHVVRVSAGDE--HVVALDSSGYVYTWGKGYCGALGHGDEIDKTLPEPLSSLKSHLAVQVCAR--KRKTFVLVDTG 281 (375)
Q Consensus 206 ~~~~~~i~~i~~g~~--~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~p~~i~~~~~~~i~~i~~g--~~~~~~l~~~g 281 (375)
......|..++...+ ..+.-..+|.|..|-...... ...+. .....|..++.. ..+.+.-..|+
T Consensus 203 ~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~-----------~~~~~-~h~~~v~~~~~sp~~~~l~s~s~D~ 270 (321)
T 3ow8_A 203 EGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANL-----------AGTLS-GHASWVLNVAFCPDDTHFVSSSSDK 270 (321)
T ss_dssp CCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCE-----------EEEEC-CCSSCEEEEEECTTSSEEEEEETTS
T ss_pred cccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcce-----------eEEEc-CCCCceEEEEECCCCCEEEEEeCCC
Confidence 222224555544333 333446778888886432110 01111 122346666554 33444456788
Q ss_pred cEEEEeCCCCCCCCCCCCCCCCceecceEcCccCCCcEEEEEeCCC--ceEEEEcCCCEEEe
Q 017198 282 SVYGFGWMGFGSLGFPDRGVSDKVLRPRILDSLRAHHVSQISTGLY--HTVVVTDRGRLFGF 341 (375)
Q Consensus 282 ~vy~~G~n~~gqlg~~~~~~~~~~~~p~~~~~~~~~~i~~i~~G~~--h~~~l~~~g~v~~w 341 (375)
.|..|-.... .....+.. ....|..++.... ..+.-..||.|..|
T Consensus 271 ~v~iwd~~~~--------------~~~~~~~~-h~~~v~~v~~s~~g~~l~s~~~d~~i~vw 317 (321)
T 3ow8_A 271 SVKVWDVGTR--------------TCVHTFFD-HQDQVWGVKYNGNGSKIVSVGDDQEIHIY 317 (321)
T ss_dssp CEEEEETTTT--------------EEEEEECC-CSSCEEEEEECTTSSEEEEEETTCCEEEE
T ss_pred cEEEEeCCCC--------------EEEEEEcC-CCCcEEEEEECCCCCEEEEEeCCCeEEEE
Confidence 8999864211 00111111 1235666665433 33444577888887
No 140
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=22.90 E-value=3.2e+02 Score=22.52 Aligned_cols=229 Identities=15% Similarity=0.062 Sum_probs=110.3
Q ss_pred CEEEEecCCce--EEEEEcCCcEEEeeCCCCCcccCCCCCCceecCEEccccCCcCeEE--EEccCCeEEEEEcCCCEEE
Q 017198 51 HVVQVSASENH--AAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQ--VTAGLNFTGFLTIRGHVHT 126 (375)
Q Consensus 51 ~i~~i~~g~~~--~~~lt~~g~vy~~G~n~~gqlg~~~~~~~~~~p~~i~~~~~~~i~~--v~~g~~~~~~lt~~g~v~~ 126 (375)
.|..|+..... .+.-..||.|..|-..... ....+.. ....|.. ++......+.-..|+.|..
T Consensus 15 ~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~------------~~~~~~~-~~~~v~~~~~~~~~~~l~s~s~d~~i~v 81 (304)
T 2ynn_A 15 RVKGIDFHPTEPWVLTTLYSGRVELWNYETQV------------EVRSIQV-TETPVRAGKFIARKNWIIVGSDDFRIRV 81 (304)
T ss_dssp CEEEEEECSSSSEEEEEETTSEEEEEETTTTE------------EEEEEEC-CSSCEEEEEEEGGGTEEEEEETTSEEEE
T ss_pred ceEEEEECCCCCEEEEEcCCCcEEEEECCCCc------------eeEEeec-cCCcEEEEEEeCCCCEEEEECCCCEEEE
Confidence 56666655433 4444468899999544311 0111111 1123333 3334455566677888988
Q ss_pred EeCCCCCcccCCCCCCCCcceeecCCCCCCCEEEEEeCCC--eEEEEECCCcEEEEeCCCCCccCCCCCCCccCceeeec
Q 017198 127 CGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGPS--YMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQT 204 (375)
Q Consensus 127 ~G~n~~g~lg~~~~~~~~~p~~~~~~~~~~~i~~i~~g~~--~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~p~~i~~ 204 (375)
|-...... ...+..- ...|..++.... +.+.-..|+.|..|-.... ......
T Consensus 82 wd~~~~~~-----------~~~~~~h--~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~-------------~~~~~~ 135 (304)
T 2ynn_A 82 FNYNTGEK-----------VVDFEAH--PDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENN-------------WALEQT 135 (304)
T ss_dssp EETTTCCE-----------EEEEECC--SSCEEEEEECSSSSEEEEEETTSCEEEEEGGGT-------------TEEEEE
T ss_pred EECCCCcE-----------EEEEeCC--CCcEEEEEEcCCCCEEEEECCCCeEEEEECCCC-------------cchhhh
Confidence 85432111 1111111 146777776543 4445567899999964221 011112
Q ss_pred cccCCccEEEEEcCC---CeEEEEeCCCCEEEEeCCCCCCCCCCCCCCcccCeeccCCCCCceEEEEec----CCcEEEE
Q 017198 205 FRRKGIHVVRVSAGD---EHVVALDSSGYVYTWGKGYCGALGHGDEIDKTLPEPLSSLKSHLAVQVCAR----KRKTFVL 277 (375)
Q Consensus 205 ~~~~~~~i~~i~~g~---~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~p~~i~~~~~~~i~~i~~g----~~~~~~l 277 (375)
+......|..++... ...+.-..||.|..|-..... ....+.......+..+..- ....+.-
T Consensus 136 ~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~-----------~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~ 204 (304)
T 2ynn_A 136 FEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQST-----------PNFTLTTGQERGVNYVDYYPLPDKPYMITA 204 (304)
T ss_dssp ECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSS-----------CSEEEECCCTTCEEEEEECCSTTCCEEEEE
T ss_pred hcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCC-----------ccceeccCCcCcEEEEEEEEcCCCCEEEEE
Confidence 222333566666543 344445788999999642211 0111111122223333321 2234445
Q ss_pred EcCCcEEEEeCCCCCCCCCCCCCCCCceecceEcCccCCCcEEEEEeCCCceE--EEEcCCCEEEeeCC
Q 017198 278 VDTGSVYGFGWMGFGSLGFPDRGVSDKVLRPRILDSLRAHHVSQISTGLYHTV--VVTDRGRLFGFGDN 344 (375)
Q Consensus 278 ~~~g~vy~~G~n~~gqlg~~~~~~~~~~~~p~~~~~~~~~~i~~i~~G~~h~~--~l~~~g~v~~wG~n 344 (375)
..|+.|..|-..... ....+. -....|..++......+ .-..||.|..|=..
T Consensus 205 s~D~~i~iWd~~~~~--------------~~~~~~-~h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~ 258 (304)
T 2ynn_A 205 SDDLTIKIWDYQTKS--------------CVATLE-GHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSS 258 (304)
T ss_dssp ETTSEEEEEETTTTE--------------EEEEEE-CCSSCEEEEEECSSSSEEEEEETTSCEEEEETT
T ss_pred cCCCeEEEEeCCCCc--------------cceeeC-CCCCCEEEEEECCCCCEEEEEcCCCeEEEEECC
Confidence 678899999643210 011111 11234555655443333 33478899999544
No 141
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=22.12 E-value=3.8e+02 Score=23.13 Aligned_cols=164 Identities=9% Similarity=-0.017 Sum_probs=72.6
Q ss_pred CEEEEecC--CceEEEEEcCCcEEEeeCCCCCcccCCCCCCceecCEEccccCCcCeEEEEcc---CCeEEEEEcCCCEE
Q 017198 51 HVVQVSAS--ENHAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAG---LNFTGFLTIRGHVH 125 (375)
Q Consensus 51 ~i~~i~~g--~~~~~~lt~~g~vy~~G~n~~gqlg~~~~~~~~~~p~~i~~~~~~~i~~v~~g---~~~~~~lt~~g~v~ 125 (375)
.|..++.. ....+.-..|+.|..|-... +++ ...+.. ...+..++.. ....+.-..||.|.
T Consensus 167 ~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~-~~~-----------~~~~~~--~~~v~~~~~~~~~~~~l~~~s~d~~v~ 232 (393)
T 1erj_A 167 DIYSLDYFPSGDKLVSGSGDRTVRIWDLRT-GQC-----------SLTLSI--EDGVTTVAVSPGDGKYIAAGSLDRAVR 232 (393)
T ss_dssp CEEEEEECTTSSEEEEEETTSEEEEEETTT-TEE-----------EEEEEC--SSCEEEEEECSTTCCEEEEEETTSCEE
T ss_pred CEEEEEEcCCCCEEEEecCCCcEEEEECCC-Cee-----------EEEEEc--CCCcEEEEEECCCCCEEEEEcCCCcEE
Confidence 56666653 34455555788898885433 110 111111 1134444432 23445567788888
Q ss_pred EEeCCCCCcccCCCCCCCCcceeecCCCCCCCEEEEEeCC--CeEEEEECCCcEEEEeCCCCCccCCCCCCCccCceeee
Q 017198 126 TCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGP--SYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQ 203 (375)
Q Consensus 126 ~~G~n~~g~lg~~~~~~~~~p~~~~~~~~~~~i~~i~~g~--~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~p~~i~ 203 (375)
.|-......+..- ..+. .....-...|..++... .+.+.-..++.|..|-........... .........
T Consensus 233 iwd~~~~~~~~~~-----~~~~-~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~--~~~~~~~~~ 304 (393)
T 1erj_A 233 VWDSETGFLVERL-----DSEN-ESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSK--TPNSGTCEV 304 (393)
T ss_dssp EEETTTCCEEEEE-----C-------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC-----------------CEEE
T ss_pred EEECCCCcEEEee-----cccc-cCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCccccc--CCCCCcceE
Confidence 8854321111000 0000 00001114677777654 344455678999999754322111000 000011111
Q ss_pred ccccCCccEEEEEcCCC--eEEEEeCCCCEEEEeC
Q 017198 204 TFRRKGIHVVRVSAGDE--HVVALDSSGYVYTWGK 236 (375)
Q Consensus 204 ~~~~~~~~i~~i~~g~~--~~~~lt~~g~v~~~G~ 236 (375)
.+......|..++...+ ..+.-..||.|+.|-.
T Consensus 305 ~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~ 339 (393)
T 1erj_A 305 TYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDK 339 (393)
T ss_dssp EEECCSSCEEEEEECGGGCEEEEEETTSEEEEEET
T ss_pred EEecccCcEEEEEECCCCCEEEEEeCCCeEEEEEC
Confidence 12122224666655443 3444468888999964
No 142
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=21.54 E-value=6.2e+02 Score=25.30 Aligned_cols=68 Identities=7% Similarity=-0.027 Sum_probs=38.7
Q ss_pred CCCEEEEecC-CceEEEEEcCCcEEEeeCCCCCcccCCCCCCceecCEEccccCCcCeEEEEc--cCCeEEEEEcCCCEE
Q 017198 49 AAHVVQVSAS-ENHAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTA--GLNFTGFLTIRGHVH 125 (375)
Q Consensus 49 ~~~i~~i~~g-~~~~~~lt~~g~vy~~G~n~~gqlg~~~~~~~~~~p~~i~~~~~~~i~~v~~--g~~~~~~lt~~g~v~ 125 (375)
...|..|+.. ..+.+....|+.|..|-......+ ..+.. ...|..++. ...+.+.-+.+|.|.
T Consensus 58 ~~~V~~l~fspg~~L~S~s~D~~v~lWd~~~~~~~------------~~~~~--~~~V~~v~~sp~g~~l~sgs~dg~V~ 123 (902)
T 2oaj_A 58 RSAIKEMRFVKGIYLVVINAKDTVYVLSLYSQKVL------------TTVFV--PGKITSIDTDASLDWMLIGLQNGSMI 123 (902)
T ss_dssp CCCEEEEEEETTTEEEEEETTCEEEEEETTTCSEE------------EEEEC--SSCEEEEECCTTCSEEEEEETTSCEE
T ss_pred CCCEEEEEEcCCCEEEEEECcCeEEEEECCCCcEE------------EEEcC--CCCEEEEEECCCCCEEEEEcCCCcEE
Confidence 3467666643 335667778999999965542111 01111 124555544 334555567899999
Q ss_pred EEeCC
Q 017198 126 TCGSN 130 (375)
Q Consensus 126 ~~G~n 130 (375)
.|-..
T Consensus 124 lwd~~ 128 (902)
T 2oaj_A 124 VYDID 128 (902)
T ss_dssp EEETT
T ss_pred EEECC
Confidence 99554
No 143
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=21.53 E-value=4e+02 Score=23.09 Aligned_cols=27 Identities=22% Similarity=0.301 Sum_probs=13.4
Q ss_pred CEEEEecCCceEEEE--EcCCcEEEeeCC
Q 017198 51 HVVQVSASENHAAFV--LQSGQVFTCGDN 77 (375)
Q Consensus 51 ~i~~i~~g~~~~~~l--t~~g~vy~~G~n 77 (375)
.|..++......+++ ..|+.|+.|-..
T Consensus 171 ~v~~~~~~~~~~~~~s~~~d~~v~~~d~~ 199 (433)
T 3bws_A 171 FVETISIPEHNELWVSQMQANAVHVFDLK 199 (433)
T ss_dssp EEEEEEEGGGTEEEEEEGGGTEEEEEETT
T ss_pred ceeEEEEcCCCEEEEEECCCCEEEEEECC
Confidence 455555433222222 245778877543
No 144
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=21.40 E-value=4.2e+02 Score=23.36 Aligned_cols=16 Identities=13% Similarity=0.227 Sum_probs=10.2
Q ss_pred eeEEE-eCCcEEEEeCC
Q 017198 9 HTLLI-SNSSVFSCGSS 24 (375)
Q Consensus 9 ~~~~l-~~g~l~~wG~n 24 (375)
+.+++ .+++||+....
T Consensus 134 ~~la~d~~g~lyv~d~~ 150 (409)
T 3hrp_A 134 WGIAAVGNNTVLAYQRD 150 (409)
T ss_dssp EEEEECSTTEEEEEETT
T ss_pred eEEEEeCCCCEEEEecC
Confidence 45666 67777776653
No 145
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=21.04 E-value=3.7e+02 Score=22.56 Aligned_cols=111 Identities=7% Similarity=0.040 Sum_probs=56.3
Q ss_pred CCEEEEEeCC----CeEEEEECCCcEEEEeCCCCCccCCCCCCCccCceeeeccccCCccEEEEEcCCCe-EEE-EeCCC
Q 017198 156 GSVVQIAAGP----SYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGDEH-VVA-LDSSG 229 (375)
Q Consensus 156 ~~i~~i~~g~----~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~p~~i~~~~~~~~~i~~i~~g~~~-~~~-lt~~g 229 (375)
..|..++... .+.+.-..+|.|..|-...... ..+.... ....|..++...+. .++ -..+|
T Consensus 126 ~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~------------~~~~~~~-~~~~i~~~~~~pdg~~lasg~~dg 192 (343)
T 3lrv_A 126 NEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQ------------YIVHSAK-SDVEYSSGVLHKDSLLLALYSPDG 192 (343)
T ss_dssp SCEEEEECCC---CCEEEEEETTCCEEEEESSSSCE------------EEEECCC-SSCCCCEEEECTTSCEEEEECTTS
T ss_pred CCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcE------------EEEEecC-CCCceEEEEECCCCCEEEEEcCCC
Confidence 4577777654 3445567899999996533111 1111000 11124444433332 222 36788
Q ss_pred CEEEEeCCCCCCCCCCCCCCcccCeeccCCCCCceEEEEecC-CcEEEEEcCCcEEEEeCC
Q 017198 230 YVYTWGKGYCGALGHGDEIDKTLPEPLSSLKSHLAVQVCARK-RKTFVLVDTGSVYGFGWM 289 (375)
Q Consensus 230 ~v~~~G~n~~gqlg~~~~~~~~~p~~i~~~~~~~i~~i~~g~-~~~~~l~~~g~vy~~G~n 289 (375)
.|..|-..... ..+..+.......|..++... ...++...++.|..|--.
T Consensus 193 ~i~iwd~~~~~----------~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~~~~v~iwd~~ 243 (343)
T 3lrv_A 193 ILDVYNLSSPD----------QASSRFPVDEEAKIKEVKFADNGYWMVVECDQTVVCFDLR 243 (343)
T ss_dssp CEEEEESSCTT----------SCCEECCCCTTSCEEEEEECTTSSEEEEEESSBEEEEETT
T ss_pred EEEEEECCCCC----------CCccEEeccCCCCEEEEEEeCCCCEEEEEeCCeEEEEEcC
Confidence 88888643211 111222221234577776543 344555557799999754
Done!