Query 017199
Match_columns 375
No_of_seqs 229 out of 1434
Neff 7.1
Searched_HMMs 46136
Date Fri Mar 29 06:28:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017199.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017199hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0626 Beta-glucosidase, lact 100.0 1.4E-98 3E-103 751.4 26.7 352 19-373 32-398 (524)
2 PLN02998 beta-glucosidase 100.0 1.1E-91 2.3E-96 717.5 29.0 306 19-327 26-341 (497)
3 PLN02849 beta-glucosidase 100.0 1.7E-90 3.6E-95 709.6 28.3 305 18-327 24-337 (503)
4 COG2723 BglB Beta-glucosidase/ 100.0 2.1E-90 4.5E-95 688.0 27.7 302 22-328 2-309 (460)
5 PLN02814 beta-glucosidase 100.0 5.9E-90 1.3E-94 705.7 28.2 303 19-327 23-335 (504)
6 PF00232 Glyco_hydro_1: Glycos 100.0 1.2E-89 2.6E-94 700.3 20.0 340 22-373 3-346 (455)
7 TIGR01233 lacG 6-phospho-beta- 100.0 1.1E-87 2.4E-92 685.4 28.3 294 23-327 3-306 (467)
8 PRK09593 arb 6-phospho-beta-gl 100.0 1.2E-87 2.7E-92 686.3 28.3 300 22-328 4-323 (478)
9 PRK13511 6-phospho-beta-galact 100.0 1.1E-87 2.4E-92 686.4 27.9 294 23-327 4-307 (469)
10 PRK09589 celA 6-phospho-beta-g 100.0 5.5E-87 1.2E-91 681.2 28.9 299 23-327 3-321 (476)
11 PRK15014 6-phospho-beta-glucos 100.0 3.1E-86 6.8E-91 675.3 30.3 302 20-327 2-323 (477)
12 PRK09852 cryptic 6-phospho-bet 100.0 1.6E-85 3.5E-90 669.1 29.0 299 23-327 3-319 (474)
13 TIGR03356 BGL beta-galactosida 100.0 3.7E-84 8.1E-89 653.9 27.4 296 24-327 1-296 (427)
14 PF02449 Glyco_hydro_42: Beta- 99.3 3.7E-12 8E-17 127.4 9.5 109 77-190 10-141 (374)
15 PF00150 Cellulase: Cellulase 99.3 1E-11 2.3E-16 117.7 10.1 110 78-191 22-135 (281)
16 smart00633 Glyco_10 Glycosyl h 98.7 3.1E-08 6.7E-13 94.0 8.9 83 99-190 2-86 (254)
17 COG1874 LacA Beta-galactosidas 98.6 9.7E-08 2.1E-12 101.0 7.9 118 79-201 32-176 (673)
18 PF07745 Glyco_hydro_53: Glyco 98.1 6.8E-05 1.5E-09 73.8 15.2 141 80-247 27-177 (332)
19 COG2730 BglC Endoglucanase [Ca 98.1 9.5E-06 2.1E-10 82.3 9.2 109 80-189 76-193 (407)
20 PF01229 Glyco_hydro_39: Glyco 98.1 1.3E-05 2.9E-10 83.1 9.8 141 79-245 41-202 (486)
21 PF00331 Glyco_hydro_10: Glyco 97.9 8E-05 1.7E-09 73.2 10.5 124 24-191 6-138 (320)
22 PF01301 Glyco_hydro_35: Glyco 97.6 0.0003 6.5E-09 69.2 9.6 110 77-188 24-151 (319)
23 PLN03059 beta-galactosidase; P 97.0 0.0029 6.2E-08 68.9 9.9 114 72-188 49-188 (840)
24 PF01373 Glyco_hydro_14: Glyco 97.0 0.001 2.3E-08 66.6 5.2 99 76-178 15-144 (402)
25 PLN02803 beta-amylase 96.9 0.0023 5E-08 65.8 7.6 100 75-178 105-243 (548)
26 PF13204 DUF4038: Protein of u 96.9 0.005 1.1E-07 59.7 9.2 103 80-187 33-156 (289)
27 PLN00197 beta-amylase; Provisi 96.8 0.0048 1E-07 63.7 8.6 108 75-188 125-271 (573)
28 PLN02161 beta-amylase 96.7 0.0069 1.5E-07 62.1 8.7 111 73-189 113-262 (531)
29 PF14587 Glyco_hydr_30_2: O-Gl 96.7 0.0044 9.5E-08 61.9 6.9 99 88-189 58-185 (384)
30 COG3693 XynA Beta-1,4-xylanase 96.6 0.0062 1.3E-07 59.2 7.3 97 86-189 55-153 (345)
31 PLN02801 beta-amylase 96.6 0.011 2.4E-07 60.6 9.4 102 73-178 33-173 (517)
32 PLN02705 beta-amylase 96.3 0.018 4E-07 60.1 9.3 100 74-177 265-403 (681)
33 PLN02905 beta-amylase 96.1 0.025 5.5E-07 59.3 9.1 101 73-177 282-421 (702)
34 PF02836 Glyco_hydro_2_C: Glyc 95.9 0.048 1E-06 52.8 9.6 93 75-187 34-132 (298)
35 COG3867 Arabinogalactan endo-1 95.8 0.45 9.8E-06 46.1 15.0 143 80-246 65-222 (403)
36 PRK10150 beta-D-glucuronidase; 95.3 0.074 1.6E-06 56.8 9.3 94 77-188 313-419 (604)
37 KOG0496 Beta-galactosidase [Ca 95.1 0.1 2.3E-06 55.1 9.1 109 78-188 50-176 (649)
38 PF14488 DUF4434: Domain of un 94.6 0.23 5.1E-06 44.2 8.8 103 77-189 20-132 (166)
39 PRK09525 lacZ beta-D-galactosi 92.1 0.62 1.3E-05 52.9 9.2 91 75-188 369-464 (1027)
40 COG3664 XynB Beta-xylosidase [ 91.8 0.27 5.8E-06 49.5 5.1 100 86-191 14-118 (428)
41 PRK10340 ebgA cryptic beta-D-g 90.9 1 2.3E-05 51.1 9.4 91 75-188 353-451 (1021)
42 COG3250 LacZ Beta-galactosidas 88.5 2.1 4.6E-05 47.3 9.2 91 73-189 317-409 (808)
43 PF07488 Glyco_hydro_67M: Glyc 87.6 5.8 0.00013 38.7 10.3 91 76-177 56-151 (328)
44 PF02638 DUF187: Glycosyl hydr 85.8 26 0.00056 34.3 14.3 99 77-175 19-154 (311)
45 KOG2233 Alpha-N-acetylglucosam 85.2 7.8 0.00017 40.1 10.3 137 76-235 77-274 (666)
46 PF03198 Glyco_hydro_72: Gluca 84.2 6.2 0.00013 38.7 8.9 90 78-187 54-145 (314)
47 smart00642 Aamy Alpha-amylase 82.5 3.9 8.6E-05 36.2 6.4 66 74-139 16-91 (166)
48 COG3934 Endo-beta-mannanase [C 80.6 0.97 2.1E-05 46.5 1.9 110 78-189 27-150 (587)
49 PF12891 Glyco_hydro_44: Glyco 78.1 7.2 0.00016 36.8 6.7 113 118-245 24-179 (239)
50 PF10566 Glyco_hydro_97: Glyco 77.7 12 0.00025 36.2 8.2 120 50-173 9-149 (273)
51 PRK09058 coproporphyrinogen II 77.6 7.9 0.00017 39.9 7.6 106 79-201 162-270 (449)
52 PF12876 Cellulase-like: Sugar 75.6 4 8.6E-05 32.1 3.7 19 170-188 1-22 (88)
53 COG3534 AbfA Alpha-L-arabinofu 74.3 18 0.0004 37.2 8.8 88 79-188 50-175 (501)
54 PRK05799 coproporphyrinogen II 73.7 7.3 0.00016 38.9 6.0 104 79-200 98-205 (374)
55 PF00128 Alpha-amylase: Alpha 73.2 6.8 0.00015 36.8 5.4 59 80-139 7-73 (316)
56 PF14871 GHL6: Hypothetical gl 72.1 21 0.00046 30.5 7.6 54 81-139 4-65 (132)
57 TIGR03581 EF_0839 conserved hy 69.1 18 0.00038 33.7 6.8 77 73-162 131-229 (236)
58 TIGR01210 conserved hypothetic 68.6 31 0.00067 33.8 9.0 108 80-202 117-229 (313)
59 PF05089 NAGLU: Alpha-N-acetyl 68.1 31 0.00068 34.2 8.8 110 76-188 18-185 (333)
60 PRK12313 glycogen branching en 68.0 23 0.00049 38.2 8.6 93 76-175 169-302 (633)
61 PRK05402 glycogen branching en 67.6 27 0.00059 38.3 9.2 90 79-175 267-397 (726)
62 cd07945 DRE_TIM_CMS Leptospira 67.5 19 0.00042 34.7 7.2 83 78-172 75-158 (280)
63 PLN02361 alpha-amylase 67.1 12 0.00025 38.2 5.8 65 74-138 26-96 (401)
64 PRK12581 oxaloacetate decarbox 66.9 22 0.00047 37.0 7.8 59 74-146 97-160 (468)
65 cd06592 GH31_glucosidase_KIAA1 66.4 36 0.00079 33.0 9.0 105 80-188 33-167 (303)
66 PLN00196 alpha-amylase; Provis 66.3 11 0.00023 38.8 5.4 64 75-138 42-112 (428)
67 cd06543 GH18_PF-ChiA-like PF-C 66.2 29 0.00062 33.8 8.2 89 84-180 19-110 (294)
68 PRK07379 coproporphyrinogen II 66.0 24 0.00052 35.7 7.9 106 79-201 114-222 (400)
69 cd07948 DRE_TIM_HCS Saccharomy 64.8 14 0.0003 35.4 5.5 60 79-139 73-133 (262)
70 TIGR02403 trehalose_treC alpha 63.8 15 0.00033 38.8 6.2 59 74-139 24-96 (543)
71 cd07939 DRE_TIM_NifV Streptomy 62.7 32 0.00068 32.6 7.6 59 79-138 71-130 (259)
72 COG1523 PulA Type II secretory 61.8 19 0.00042 39.3 6.5 57 83-139 206-286 (697)
73 PRK06294 coproporphyrinogen II 61.4 34 0.00073 34.3 7.9 95 79-191 102-200 (370)
74 PRK05628 coproporphyrinogen II 60.6 39 0.00085 33.7 8.2 106 79-201 107-215 (375)
75 TIGR02090 LEU1_arch isopropylm 60.6 28 0.00062 34.8 7.2 61 78-139 72-133 (363)
76 cd03174 DRE_TIM_metallolyase D 60.4 31 0.00067 32.2 7.1 62 80-142 77-139 (265)
77 PRK10933 trehalose-6-phosphate 60.0 19 0.0004 38.3 6.0 64 74-139 30-102 (551)
78 COG0821 gcpE 1-hydroxy-2-methy 59.8 76 0.0017 31.6 9.6 89 69-172 76-164 (361)
79 PRK05692 hydroxymethylglutaryl 59.7 37 0.0008 32.9 7.6 86 78-173 80-167 (287)
80 cd06593 GH31_xylosidase_YicI Y 59.6 61 0.0013 31.3 9.2 106 79-188 26-161 (308)
81 PRK14041 oxaloacetate decarbox 57.9 39 0.00084 35.2 7.7 98 75-190 88-210 (467)
82 TIGR01515 branching_enzym alph 57.8 61 0.0013 34.8 9.5 90 79-175 158-288 (613)
83 PRK09441 cytoplasmic alpha-amy 57.6 20 0.00044 37.1 5.7 65 74-139 19-102 (479)
84 PF03659 Glyco_hydro_71: Glyco 57.1 48 0.001 33.6 8.1 51 77-138 17-67 (386)
85 PLN02746 hydroxymethylglutaryl 56.8 43 0.00092 33.5 7.6 84 79-172 123-208 (347)
86 PRK14040 oxaloacetate decarbox 56.7 42 0.0009 36.1 7.9 98 75-190 90-212 (593)
87 PRK09505 malS alpha-amylase; R 56.3 20 0.00043 39.2 5.5 61 79-139 232-313 (683)
88 cd06591 GH31_xylosidase_XylS X 55.9 84 0.0018 30.7 9.5 79 112-191 60-164 (319)
89 PRK00366 ispG 4-hydroxy-3-meth 55.9 63 0.0014 32.3 8.4 73 87-171 98-170 (360)
90 PRK14705 glycogen branching en 55.8 62 0.0013 37.7 9.5 91 83-175 772-897 (1224)
91 cd06602 GH31_MGAM_SI_GAA This 55.4 82 0.0018 31.1 9.4 105 81-189 28-168 (339)
92 PRK12858 tagatose 1,6-diphosph 54.9 53 0.0012 32.7 7.9 52 83-138 112-163 (340)
93 PRK12399 tagatose 1,6-diphosph 53.4 77 0.0017 31.3 8.5 58 83-144 111-168 (324)
94 cd06601 GH31_lyase_GLase GLase 53.2 69 0.0015 31.7 8.4 71 120-192 66-139 (332)
95 TIGR02402 trehalose_TreZ malto 52.9 25 0.00055 37.2 5.6 92 76-175 110-237 (542)
96 TIGR02456 treS_nterm trehalose 52.8 28 0.0006 36.8 5.8 57 76-139 27-97 (539)
97 cd06604 GH31_glucosidase_II_Ma 52.4 1E+02 0.0022 30.4 9.5 69 120-190 66-163 (339)
98 cd06598 GH31_transferase_CtsZ 52.4 1.1E+02 0.0023 29.9 9.6 109 80-190 27-168 (317)
99 PRK04161 tagatose 1,6-diphosph 52.3 82 0.0018 31.2 8.5 59 82-144 112-170 (329)
100 TIGR02660 nifV_homocitr homoci 52.1 54 0.0012 32.8 7.6 59 79-138 74-133 (365)
101 TIGR00433 bioB biotin syntheta 51.8 44 0.00096 31.9 6.7 56 79-138 122-178 (296)
102 cd06603 GH31_GANC_GANAB_alpha 51.5 96 0.0021 30.6 9.2 72 120-191 66-167 (339)
103 PLN02784 alpha-amylase 51.1 32 0.00069 38.4 6.0 65 74-138 518-588 (894)
104 PRK11858 aksA trans-homoaconit 50.8 63 0.0014 32.5 7.8 58 80-138 78-136 (378)
105 PRK10785 maltodextrin glucosid 50.5 37 0.00081 36.4 6.4 54 79-139 181-247 (598)
106 cd07944 DRE_TIM_HOA_like 4-hyd 50.3 62 0.0013 30.9 7.3 47 80-140 85-131 (266)
107 PLN02447 1,4-alpha-glucan-bran 49.8 34 0.00073 37.8 6.0 87 82-175 256-383 (758)
108 PRK03705 glycogen debranching 49.3 39 0.00086 36.7 6.4 91 83-175 185-329 (658)
109 PRK08599 coproporphyrinogen II 48.3 83 0.0018 31.4 8.2 105 79-200 99-206 (377)
110 COG1501 Alpha-glucosidases, fa 48.2 62 0.0013 35.9 7.8 101 89-193 294-422 (772)
111 cd06600 GH31_MGAM-like This fa 48.2 1.4E+02 0.003 29.2 9.6 104 83-190 30-164 (317)
112 cd07937 DRE_TIM_PC_TC_5S Pyruv 47.6 1.1E+02 0.0023 29.3 8.6 47 79-139 93-139 (275)
113 TIGR00539 hemN_rel putative ox 47.4 47 0.001 33.0 6.3 94 79-189 99-195 (360)
114 PRK08446 coproporphyrinogen II 46.6 67 0.0015 31.8 7.2 94 80-190 98-194 (350)
115 cd02742 GH20_hexosaminidase Be 46.2 67 0.0014 31.2 7.0 63 79-148 18-99 (303)
116 COG3589 Uncharacterized conser 45.8 89 0.0019 31.1 7.6 71 81-166 20-90 (360)
117 TIGR00612 ispG_gcpE 1-hydroxy- 45.6 85 0.0018 31.2 7.5 88 69-171 74-161 (346)
118 PRK12568 glycogen branching en 45.0 33 0.0007 37.8 5.0 93 76-175 268-401 (730)
119 cd07938 DRE_TIM_HMGL 3-hydroxy 44.5 1.1E+02 0.0024 29.3 8.1 84 79-172 75-160 (274)
120 cd06542 GH18_EndoS-like Endo-b 44.2 87 0.0019 29.2 7.3 55 117-175 50-104 (255)
121 PF01055 Glyco_hydro_31: Glyco 44.0 1.2E+02 0.0026 30.8 8.8 108 79-190 45-184 (441)
122 KOG1065 Maltase glucoamylase a 43.9 1.1E+02 0.0023 34.0 8.6 103 83-192 317-454 (805)
123 PRK12331 oxaloacetate decarbox 43.8 94 0.002 32.2 7.9 93 80-190 99-211 (448)
124 TIGR01211 ELP3 histone acetylt 43.1 94 0.002 32.9 7.9 107 79-203 205-317 (522)
125 PRK14510 putative bifunctional 43.1 41 0.00089 39.3 5.7 59 81-139 191-268 (1221)
126 PRK14511 maltooligosyl trehalo 42.7 63 0.0014 36.3 6.8 56 77-139 20-90 (879)
127 PF04914 DltD_C: DltD C-termin 42.6 93 0.002 26.5 6.5 58 116-177 34-91 (130)
128 cd07940 DRE_TIM_IPMS 2-isoprop 42.3 84 0.0018 29.8 6.9 58 80-138 72-134 (268)
129 TIGR01212 radical SAM protein, 42.1 1.6E+02 0.0035 28.6 8.9 73 117-202 162-234 (302)
130 cd06545 GH18_3CO4_chitinase Th 41.9 92 0.002 29.2 7.0 73 97-175 27-99 (253)
131 TIGR03471 HpnJ hopanoid biosyn 41.7 1.4E+02 0.0031 30.7 9.0 60 80-144 287-348 (472)
132 COG0366 AmyA Glycosidases [Car 41.2 46 0.00099 34.0 5.3 51 81-138 33-97 (505)
133 cd06565 GH20_GcnA-like Glycosy 40.8 89 0.0019 30.3 6.9 62 79-148 19-87 (301)
134 TIGR01108 oadA oxaloacetate de 40.7 1E+02 0.0022 33.1 7.8 93 80-190 94-206 (582)
135 TIGR01232 lacD tagatose 1,6-di 40.5 1.3E+02 0.0028 29.8 7.9 59 82-144 111-169 (325)
136 TIGR03234 OH-pyruv-isom hydrox 38.8 88 0.0019 29.0 6.4 65 77-144 84-150 (254)
137 TIGR02401 trehalose_TreY malto 38.7 61 0.0013 36.2 5.9 56 77-139 16-86 (825)
138 PRK09936 hypothetical protein; 38.1 2.5E+02 0.0055 27.4 9.3 62 79-149 40-101 (296)
139 PRK01060 endonuclease IV; Prov 37.9 1.6E+02 0.0035 27.6 8.2 51 79-135 14-64 (281)
140 PF10107 Endonuc_Holl: Endonuc 37.0 21 0.00046 31.3 1.7 42 278-321 72-113 (156)
141 PLN02960 alpha-amylase 37.0 68 0.0015 36.0 5.9 95 74-175 413-549 (897)
142 cd02932 OYE_YqiM_FMN Old yello 36.8 4.1E+02 0.009 26.0 15.1 40 102-142 62-101 (336)
143 COG5016 Pyruvate/oxaloacetate 36.2 1.7E+02 0.0036 30.1 7.9 57 74-144 90-151 (472)
144 PF10566 Glyco_hydro_97: Glyco 35.6 63 0.0014 31.2 4.8 60 80-151 109-168 (273)
145 PRK12677 xylose isomerase; Pro 35.6 3.3E+02 0.0072 27.5 10.3 71 79-157 33-104 (384)
146 cd02803 OYE_like_FMN_family Ol 35.4 3.1E+02 0.0066 26.5 9.8 142 103-260 63-229 (327)
147 PRK05904 coproporphyrinogen II 35.2 1.7E+02 0.0037 29.1 8.0 94 80-190 103-199 (353)
148 PRK08208 coproporphyrinogen II 35.0 1.4E+02 0.0031 30.5 7.6 92 79-188 140-235 (430)
149 PF04028 DUF374: Domain of unk 34.8 1.6E+02 0.0034 22.5 6.1 43 84-144 27-69 (74)
150 PTZ00445 p36-lilke protein; Pr 34.8 81 0.0018 29.4 5.2 56 83-139 35-99 (219)
151 cd06525 GH25_Lyc-like Lyc mura 34.6 3.2E+02 0.0069 24.1 9.1 50 82-144 13-62 (184)
152 cd06568 GH20_SpHex_like A subg 34.5 1.5E+02 0.0033 29.2 7.5 64 78-148 19-102 (329)
153 cd07941 DRE_TIM_LeuA3 Desulfob 33.7 86 0.0019 29.9 5.5 80 81-172 82-162 (273)
154 PF00682 HMGL-like: HMGL-like 33.5 1.4E+02 0.003 27.5 6.7 79 80-173 66-149 (237)
155 PRK05660 HemN family oxidoredu 33.2 1.7E+02 0.0038 29.2 7.8 94 79-189 106-202 (378)
156 PRK08195 4-hyroxy-2-oxovalerat 33.1 1.7E+02 0.0037 29.0 7.6 47 80-140 91-137 (337)
157 PRK06582 coproporphyrinogen II 33.1 2.2E+02 0.0048 28.7 8.6 104 80-200 111-216 (390)
158 TIGR00538 hemN oxygen-independ 32.9 82 0.0018 32.4 5.6 61 79-144 150-213 (455)
159 PLN02389 biotin synthase 32.8 1.4E+02 0.0029 30.3 6.9 59 77-139 175-234 (379)
160 cd06562 GH20_HexA_HexB-like Be 32.7 1.1E+02 0.0025 30.2 6.4 63 79-148 20-97 (348)
161 cd06599 GH31_glycosidase_Aec37 32.6 1.6E+02 0.0034 28.8 7.2 71 118-189 73-171 (317)
162 smart00729 Elp3 Elongator prot 32.3 2.7E+02 0.0058 24.0 8.2 58 77-138 97-157 (216)
163 PRK14507 putative bifunctional 32.2 89 0.0019 37.7 6.2 54 79-139 760-828 (1693)
164 cd07943 DRE_TIM_HOA 4-hydroxy- 32.1 2.1E+02 0.0046 26.9 7.9 46 80-139 88-133 (263)
165 PF03511 Fanconi_A: Fanconi an 31.8 32 0.0007 25.5 1.6 39 101-142 19-57 (64)
166 cd02874 GH18_CFLE_spore_hydrol 31.8 1.6E+02 0.0035 28.4 7.1 84 83-175 16-103 (313)
167 TIGR02100 glgX_debranch glycog 31.5 94 0.002 34.0 5.9 56 83-139 190-266 (688)
168 TIGR00587 nfo apurinic endonuc 31.4 1.2E+02 0.0025 28.9 6.0 87 79-177 13-103 (274)
169 PRK14706 glycogen branching en 31.3 80 0.0017 34.3 5.3 90 84-175 175-299 (639)
170 cd00019 AP2Ec AP endonuclease 30.9 2.5E+02 0.0053 26.4 8.2 54 77-136 10-64 (279)
171 PRK13347 coproporphyrinogen II 30.9 1.7E+02 0.0037 30.1 7.5 61 79-144 151-214 (453)
172 PRK09249 coproporphyrinogen II 30.6 1.9E+02 0.004 29.8 7.7 61 79-144 150-213 (453)
173 PRK07094 biotin synthase; Prov 30.5 1.9E+02 0.0042 27.9 7.5 58 78-139 127-186 (323)
174 PLN02925 4-hydroxy-3-methylbut 30.0 1.6E+02 0.0034 32.3 7.0 53 119-172 211-263 (733)
175 TIGR03217 4OH_2_O_val_ald 4-hy 29.6 4.3E+02 0.0092 26.1 9.8 55 79-147 89-145 (333)
176 cd04733 OYE_like_2_FMN Old yel 29.3 5.5E+02 0.012 25.1 14.8 152 101-267 63-245 (338)
177 COG3280 TreY Maltooligosyl tre 29.2 1.1E+02 0.0024 33.7 5.8 65 80-148 22-94 (889)
178 PRK09057 coproporphyrinogen II 28.2 3.1E+02 0.0066 27.5 8.6 105 79-200 103-209 (380)
179 cd06595 GH31_xylosidase_XylS-l 27.9 2.2E+02 0.0048 27.4 7.3 109 81-190 29-163 (292)
180 PF01261 AP_endonuc_2: Xylose 27.8 72 0.0016 27.9 3.7 62 76-138 70-132 (213)
181 PTZ00445 p36-lilke protein; Pr 27.8 88 0.0019 29.2 4.2 65 118-188 29-103 (219)
182 PF02065 Melibiase: Melibiase; 26.9 6.8E+02 0.015 25.4 14.1 133 79-235 60-226 (394)
183 PRK08207 coproporphyrinogen II 26.8 1.5E+02 0.0033 31.0 6.3 92 80-189 269-364 (488)
184 PF04646 DUF604: Protein of un 26.8 39 0.00085 32.2 1.7 73 126-201 76-148 (255)
185 cd06564 GH20_DspB_LnbB-like Gl 25.9 6.2E+02 0.014 24.6 10.6 63 79-148 19-109 (326)
186 PF13812 PPR_3: Pentatricopept 25.8 49 0.0011 19.9 1.6 15 120-134 20-34 (34)
187 TIGR01856 hisJ_fam histidinol 25.7 1.5E+02 0.0034 27.7 5.7 61 118-180 15-78 (253)
188 PF02057 Glyco_hydro_59: Glyco 25.7 1.4E+02 0.003 32.5 5.8 65 122-189 116-185 (669)
189 cd07947 DRE_TIM_Re_CS Clostrid 24.3 1.5E+02 0.0033 28.5 5.4 62 76-138 73-135 (279)
190 PRK09282 pyruvate carboxylase 24.2 3.1E+02 0.0066 29.5 8.1 94 79-190 98-211 (592)
191 COG5520 O-Glycosyl hydrolase [ 24.0 2.3E+02 0.0049 28.7 6.4 94 88-190 77-181 (433)
192 PRK10658 putative alpha-glucos 23.9 5.2E+02 0.011 28.2 9.9 103 83-188 289-420 (665)
193 cd06570 GH20_chitobiase-like_1 23.9 2.8E+02 0.006 27.2 7.2 63 79-148 20-95 (311)
194 PF07071 DUF1341: Protein of u 23.8 1.6E+02 0.0034 27.3 4.9 46 77-134 135-180 (218)
195 PRK14042 pyruvate carboxylase 23.7 3.2E+02 0.007 29.4 8.1 98 75-190 89-211 (596)
196 PRK09856 fructoselysine 3-epim 23.5 1.1E+02 0.0024 28.6 4.3 60 76-137 89-148 (275)
197 KOG0470 1,4-alpha-glucan branc 23.4 97 0.0021 33.9 4.1 64 76-140 253-333 (757)
198 PRK11572 copper homeostasis pr 23.2 2.6E+02 0.0057 26.6 6.6 42 76-127 72-113 (248)
199 PRK12330 oxaloacetate decarbox 23.1 3.4E+02 0.0073 28.6 8.0 94 80-190 100-214 (499)
200 TIGR00423 radical SAM domain p 23.1 5E+02 0.011 25.0 8.9 54 79-139 106-166 (309)
201 TIGR02631 xylA_Arthro xylose i 23.0 5.6E+02 0.012 25.8 9.4 93 77-177 32-130 (382)
202 TIGR02026 BchE magnesium-proto 22.9 4.2E+02 0.0092 27.6 8.8 61 79-144 286-348 (497)
203 COG3661 AguA Alpha-glucuronida 22.6 5.7E+02 0.012 26.7 9.0 88 77-173 183-276 (684)
204 cd06522 GH25_AtlA-like AtlA is 22.5 4.2E+02 0.0092 23.6 7.7 49 81-144 16-66 (192)
205 TIGR00542 hxl6Piso_put hexulos 22.5 1.5E+02 0.0032 28.0 4.9 60 77-138 94-153 (279)
206 PF04055 Radical_SAM: Radical 21.7 1.6E+02 0.0034 24.3 4.5 51 80-134 90-143 (166)
207 PF00728 Glyco_hydro_20: Glyco 21.4 1.2E+02 0.0026 29.6 4.1 61 79-146 20-98 (351)
208 TIGR02127 pyrF_sub2 orotidine 21.3 2.8E+02 0.0061 26.5 6.5 58 83-146 44-101 (261)
209 PRK06256 biotin synthase; Vali 21.3 1.7E+02 0.0036 28.6 5.2 57 78-138 150-207 (336)
210 PRK09389 (R)-citramalate synth 20.9 1.8E+02 0.0039 30.4 5.5 108 78-190 74-200 (488)
211 COG3684 LacD Tagatose-1,6-bisp 20.8 1.8E+02 0.0039 28.1 4.8 56 82-142 116-171 (306)
212 PF07555 NAGidase: beta-N-acet 20.7 8E+02 0.017 24.0 10.6 85 81-184 19-111 (306)
213 PF14606 Lipase_GDSL_3: GDSL-l 20.7 2.2E+02 0.0048 25.6 5.3 94 80-186 49-146 (178)
214 cd01335 Radical_SAM Radical SA 20.5 1.8E+02 0.0038 24.7 4.6 59 79-139 87-146 (204)
215 cd06563 GH20_chitobiase-like T 20.4 3.1E+02 0.0067 27.2 6.9 63 79-148 20-113 (357)
216 PRK07106 5-aminoimidazole-4-ca 20.4 1.4E+02 0.003 30.3 4.3 51 70-137 333-383 (390)
217 PRK13398 3-deoxy-7-phosphohept 20.3 3E+02 0.0065 26.3 6.5 71 73-148 37-108 (266)
218 PF11790 Glyco_hydro_cc: Glyco 20.0 76 0.0016 29.7 2.3 24 165-189 54-77 (239)
No 1
>KOG0626 consensus Beta-glucosidase, lactase phlorizinhydrolase, and related proteins [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.4e-98 Score=751.39 Aligned_cols=352 Identities=53% Similarity=0.980 Sum_probs=329.2
Q ss_pred CCCCCCCCCCeehhhhccccccCccCCCCCCCceeeeccc-cCCccccCCCCCccCCcccCcHHHHHHHHHcCCCeEEec
Q 017199 19 VSKTDFPPNFVFGVATSAYQIEGACEEGNRGASIWDDFTH-TEGKIIDKSNGDVAVDHYHRYKEDIDLIAKLGFDAYRFS 97 (375)
Q Consensus 19 ~~~~~fp~~FlwG~atsa~QvEG~~~~~g~~~s~wd~~~~-~~~~~~~~~~~~~a~~~~~~y~eDi~l~~~lG~~~~R~s 97 (375)
+++.+||++|+||+||||||+|||.++|||++|+||+|+| .++++.++.++++|||+||+|+|||+||++||+++||||
T Consensus 32 ~~r~~FP~~F~FGtAtSAyQ~EGA~~e~gRg~svWD~f~~~~p~~~~~~~ngdva~D~Yh~ykeDv~Lmk~lgv~afRFS 111 (524)
T KOG0626|consen 32 FSRADFPKGFLFGTATSAYQVEGAANEDGRGPSVWDTFTHKYPGKICDGSNGDVAVDFYHRYKEDVKLMKELGVDAFRFS 111 (524)
T ss_pred ccccCCCCCceeeccchHHHhhhhhccCCCCCchhhhhhccCCcccccCCCCCeechhhhhhHHHHHHHHHcCCCeEEEE
Confidence 4577899999999999999999999999999999999998 455777788899999999999999999999999999999
Q ss_pred ccccccccCCC--CCcCChhHHHHHHHHHHHHHHcCCeeEEEeccCCCchhHHhhcCCCCCHHHHHHHHHHHHHHHHHcC
Q 017199 98 ISWSRIFPDGL--GTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLPLHLHESMGGWLNKEIVKYFEIYADTCFASFG 175 (375)
Q Consensus 98 i~W~ri~P~~~--g~~~n~~~l~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~gg~~~~~~~~~f~~ya~~~~~~~~ 175 (375)
|+||||+|.|. + .+|++||++|+++|++|+++||+|+|||+|||+|++|+++||||.|+++++.|.+||+.||++||
T Consensus 112 IsWSRIlP~G~~~~-gVN~~Gi~fY~~LI~eL~~nGI~P~VTLfHwDlPq~LeDeYgGwLn~~ivedF~~yA~~CF~~fG 190 (524)
T KOG0626|consen 112 ISWSRILPNGRLTG-GVNEAGIQFYNNLIDELLANGIEPFVTLFHWDLPQALEDEYGGWLNPEIVEDFRDYADLCFQEFG 190 (524)
T ss_pred eehHhhCCCCCcCC-CcCHHHHHHHHHHHHHHHHcCCeEEEEEecCCCCHHHHHHhccccCHHHHHHHHHHHHHHHHHhc
Confidence 99999999986 5 79999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcceEEeccccchhhcccccccccCCCC---------CCCCCchHHHHHHHHHHHHHHHHHHHHHhhcCCCCceEEEEe
Q 017199 176 DRVKNWITINEPLQTAVNGYCTGIFAPGR---------HQHSSTEPYLVAHHQILAHAAAFSVYQRKYKDKQGGNIGLVV 246 (375)
Q Consensus 176 d~V~~w~t~NEp~~~~~~gy~~g~~~p~~---------~~~~~~~~~~~~h~~llAHa~Av~~~k~~~~~~~~~kVG~~~ 246 (375)
|+||+|+|+|||++++..||..|..|||+ .+++.++.|.|.||||+|||+||++||+.++..|+|+||+++
T Consensus 191 DrVK~WiT~NEP~v~s~~gY~~G~~aPGrCs~~~~~c~~g~s~~epYiv~HNllLAHA~Av~~yr~kyk~~Q~G~IGi~~ 270 (524)
T KOG0626|consen 191 DRVKHWITFNEPNVFSIGGYDTGTKAPGRCSKYVGNCSAGNSGTEPYIVAHNLLLAHAAAVDLYRKKYKKKQGGKIGIAL 270 (524)
T ss_pred ccceeeEEecccceeeeehhccCCCCCCCCCcccccCCCCCCCCCcchHHHHHHHHHHHHHHHHHHhhhhhcCCeEeEEE
Confidence 99999999999999999999999999998 367889999999999999999999999998878999999999
Q ss_pred cCCccccCCCCHHHHHHHHHhhhhhccccccceecCCCchHHHhhhccCCCCCCHhHHHHhcCCCcEEEEcccccccccc
Q 017199 247 DCEWAEANSDKIEDKSAAARRLDFQIGWYLHPIYYGDYPEVMRNNLGDQLPKFMQKDKELVRNSLDFVGLNHYTSRFIAH 326 (375)
Q Consensus 247 ~~~~~~P~~~~~~D~~Aa~~~~~~~~~~flD~i~~G~YP~~~~~~l~~~~p~~t~ed~~~ikg~~DFiGiNYYts~~V~~ 326 (375)
...|+.|++.+++|.+||+|+..|..+|+++|++.|+||+.|++.++.|||.||++|.++|||+.||+|||||++.+|+.
T Consensus 271 ~~~w~eP~~~s~~D~~Aa~Ra~~F~~gw~l~p~~~GdYP~~Mk~~vg~rLP~FT~ee~~~lKGS~DFvGiNyYts~~~~~ 350 (524)
T KOG0626|consen 271 SARWFEPYDDSKEDKEAAERALDFFLGWFLEPLTFGDYPDEMKERVGSRLPKFTEEESKLLKGSYDFVGINYYTSRYVKH 350 (524)
T ss_pred eeeeeccCCCChHHHHHHHHHHHhhhhhhhcccccCCcHHHHHHHhcccCCCCCHHHHHHhcCchhhceeehhhhhhhhc
Confidence 99999999988999999999999999999999889999999999999999999999999999999999999999999998
Q ss_pred cCCCC-CCCCCccccceeEEeeecCC-eeecCCCCCcceEEc-cCccccc
Q 017199 327 ATKSP-EEGSFYEAQEMERLVEWEGG-EVIGEKHPNGFMLFH-GAFGRFL 373 (375)
Q Consensus 327 ~~~~~-~~~~~~~~~~~~~~~~~~~g-~~ig~~~~~~w~~~~-~~~~~~~ 373 (375)
.+.+. ...+++.+|..+.. ..+| .++|..+++.|++++ +|+|++|
T Consensus 351 ~~~~~~~~~~~~~~d~~~~~--~~~~~~~~~~~~~~~~~~v~P~Glr~~L 398 (524)
T KOG0626|consen 351 LKPPPDPSQPGWSTDSGVDW--TLEGNDLIGPKAGSDWLPVYPWGLRKLL 398 (524)
T ss_pred cCCCCCCCCcccccccceee--eecccccccccccccceeeccHHHHHHH
Confidence 76533 33467777777665 3444 899999999999999 7888876
No 2
>PLN02998 beta-glucosidase
Probab=100.00 E-value=1.1e-91 Score=717.49 Aligned_cols=306 Identities=51% Similarity=0.947 Sum_probs=285.2
Q ss_pred CCCCCCCCCCeehhhhccccccCccCCCCCCCceeeeccccCCccccCCCCCccCCcccCcHHHHHHHHHcCCCeEEecc
Q 017199 19 VSKTDFPPNFVFGVATSAYQIEGACEEGNRGASIWDDFTHTEGKIIDKSNGDVAVDHYHRYKEDIDLIAKLGFDAYRFSI 98 (375)
Q Consensus 19 ~~~~~fp~~FlwG~atsa~QvEG~~~~~g~~~s~wd~~~~~~~~~~~~~~~~~a~~~~~~y~eDi~l~~~lG~~~~R~si 98 (375)
+.+.+||++|+||+|||||||||++++||||+|+||.+++ ++. .+..++++||||||||+|||+|||+||+++|||||
T Consensus 26 ~~~~~FP~~FlwG~AtSA~QvEGa~~~~Gkg~siwD~~~~-~~~-~~~~~~~~a~D~Yhry~EDi~lmk~lG~~~YRfSI 103 (497)
T PLN02998 26 YSRNDFPPGFVFGSGTSAYQVEGAADEDGRTPSIWDVFAH-AGH-SGVAAGNVACDQYHKYKEDVKLMADMGLEAYRFSI 103 (497)
T ss_pred CccccCCCCCEEeeechHHHhCCCcCCCCCccchhhcccc-cCc-CCCCCCcccccHHHhhHHHHHHHHHcCCCeEEeec
Confidence 4566799999999999999999999999999999999987 442 22247789999999999999999999999999999
Q ss_pred cccccccCCCCCcCChhHHHHHHHHHHHHHHcCCeeEEEeccCCCchhHHhhcCCCCCHHHHHHHHHHHHHHHHHcCCCc
Q 017199 99 SWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLPLHLHESMGGWLNKEIVKYFEIYADTCFASFGDRV 178 (375)
Q Consensus 99 ~W~ri~P~~~g~~~n~~~l~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~gg~~~~~~~~~f~~ya~~~~~~~~d~V 178 (375)
+|+||+|+|.| .+|++||+||+++|++|+++||+|+|||+|||+|+||+++||||.|++++++|++||+.|+++|||+|
T Consensus 104 sWsRI~P~G~g-~vN~~gl~~Y~~lid~L~~~GIeP~VTL~H~dlP~~L~~~yGGW~n~~~v~~F~~YA~~~~~~fgdrV 182 (497)
T PLN02998 104 SWSRLLPSGRG-PINPKGLQYYNNLIDELITHGIQPHVTLHHFDLPQALEDEYGGWLSQEIVRDFTAYADTCFKEFGDRV 182 (497)
T ss_pred cHHhcCcCCCC-CcCHHHHHHHHHHHHHHHHcCCceEEEecCCCCCHHHHHhhCCcCCchHHHHHHHHHHHHHHHhcCcC
Confidence 99999999878 89999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEeccccchhhcccccccccCCCCCC----------CCCchHHHHHHHHHHHHHHHHHHHHHhhcCCCCceEEEEecC
Q 017199 179 KNWITINEPLQTAVNGYCTGIFAPGRHQ----------HSSTEPYLVAHHQILAHAAAFSVYQRKYKDKQGGNIGLVVDC 248 (375)
Q Consensus 179 ~~w~t~NEp~~~~~~gy~~g~~~p~~~~----------~~~~~~~~~~h~~llAHa~Av~~~k~~~~~~~~~kVG~~~~~ 248 (375)
++|+|||||++++..||..|.+|||... ++.+..++++||+++|||+|++++|+.++..++++||++++.
T Consensus 183 k~WiT~NEP~~~~~~gy~~G~~~Pg~~~~~~~~~~~~~~~~~~~~~~~hn~llAHa~A~~~~~~~~~~~~~g~IGi~~~~ 262 (497)
T PLN02998 183 SHWTTINEVNVFALGGYDQGITPPARCSPPFGLNCTKGNSSIEPYIAVHNMLLAHASATILYKQQYKYKQHGSVGISVYT 262 (497)
T ss_pred CEEEEccCcchhhhcchhhcccCCCccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCcEEEEEeC
Confidence 9999999999999999999999998521 123457999999999999999999998654578999999999
Q ss_pred CccccCCCCHHHHHHHHHhhhhhccccccceecCCCchHHHhhhccCCCCCCHhHHHHhcCCCcEEEEccccccccccc
Q 017199 249 EWAEANSDKIEDKSAAARRLDFQIGWYLHPIYYGDYPEVMRNNLGDQLPKFMQKDKELVRNSLDFVGLNHYTSRFIAHA 327 (375)
Q Consensus 249 ~~~~P~~~~~~D~~Aa~~~~~~~~~~flD~i~~G~YP~~~~~~l~~~~p~~t~ed~~~ikg~~DFiGiNYYts~~V~~~ 327 (375)
.++||.+++|+|++||++.+++.++||+||+++|+||+.|++.+++++|.|+++|+++|++++||||||||+|.+|+..
T Consensus 263 ~~~~P~~~~~~D~~aa~~~~~~~~~~f~dp~~~G~YP~~~~~~l~~~lp~~t~~d~~~i~~~~DFlGiNyYts~~v~~~ 341 (497)
T PLN02998 263 YGAVPLTNSVKDKQATARVNDFYIGWILHPLVFGDYPETMKTNVGSRLPAFTEEESEQVKGAFDFVGVINYMALYVKDN 341 (497)
T ss_pred CeeecCCCCHHHHHHHHHHHHHHhhhhhhHHhCCCcCHHHHHHHhcCCCCCCHHHHHHhcCCCCEEEEchhcCcccccC
Confidence 9999999999999999999999999999999999999999999988899999999999999999999999999999864
No 3
>PLN02849 beta-glucosidase
Probab=100.00 E-value=1.7e-90 Score=709.61 Aligned_cols=305 Identities=47% Similarity=0.913 Sum_probs=285.5
Q ss_pred CCCCCCCCCCCeehhhhccccccCccCCCCCCCceeeeccccCCccccCCCCCccCCcccCcHHHHHHHHHcCCCeEEec
Q 017199 18 NVSKTDFPPNFVFGVATSAYQIEGACEEGNRGASIWDDFTHTEGKIIDKSNGDVAVDHYHRYKEDIDLIAKLGFDAYRFS 97 (375)
Q Consensus 18 ~~~~~~fp~~FlwG~atsa~QvEG~~~~~g~~~s~wd~~~~~~~~~~~~~~~~~a~~~~~~y~eDi~l~~~lG~~~~R~s 97 (375)
.+.+.+||++|+||+|||||||||++++||||+|+||++++.++ +.++++||||||||+|||+|||+||+++||||
T Consensus 24 ~~~~~~FP~dFlwG~AtsA~QiEGa~~~~Gkg~SiwD~~~~~~~----~~~~~~a~D~YhrY~eDI~Lm~~lG~~aYRfS 99 (503)
T PLN02849 24 DYSRSDFPEGFVFGAGTSAYQWEGAFDEDGRKPSVWDTFLHSRN----MSNGDIACDGYHKYKEDVKLMVETGLDAFRFS 99 (503)
T ss_pred CCccccCCCCCEEEeechhhhhcCCcCCCCCcCcceeeeeccCC----CCCCCccccHHHhHHHHHHHHHHcCCCeEEEe
Confidence 35567899999999999999999999999999999999987542 35788999999999999999999999999999
Q ss_pred ccccccccCCCCCcCChhHHHHHHHHHHHHHHcCCeeEEEeccCCCchhHHhhcCCCCCHHHHHHHHHHHHHHHHHcCCC
Q 017199 98 ISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLPLHLHESMGGWLNKEIVKYFEIYADTCFASFGDR 177 (375)
Q Consensus 98 i~W~ri~P~~~g~~~n~~~l~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~gg~~~~~~~~~f~~ya~~~~~~~~d~ 177 (375)
|+|+||+|+|.| .+|++||+||+++|++|+++||+|+|||+|||+|+||+++||||.|++++++|++||+.|+++|||+
T Consensus 100 IsWsRI~P~G~g-~vN~~gl~fY~~lid~l~~~GI~P~VTL~H~dlP~~L~~~yGGW~nr~~v~~F~~YA~~~f~~fgDr 178 (503)
T PLN02849 100 ISWSRLIPNGRG-SVNPKGLQFYKNFIQELVKHGIEPHVTLFHYDHPQYLEDDYGGWINRRIIKDFTAYADVCFREFGNH 178 (503)
T ss_pred ccHHhcCcCCCC-CCCHHHHHHHHHHHHHHHHcCCeEEEeecCCCCcHHHHHhcCCcCCchHHHHHHHHHHHHHHHhcCc
Confidence 999999999878 8999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceEEeccccchhhcccccccccCCCCCC---------CCCchHHHHHHHHHHHHHHHHHHHHHhhcCCCCceEEEEecC
Q 017199 178 VKNWITINEPLQTAVNGYCTGIFAPGRHQ---------HSSTEPYLVAHHQILAHAAAFSVYQRKYKDKQGGNIGLVVDC 248 (375)
Q Consensus 178 V~~w~t~NEp~~~~~~gy~~g~~~p~~~~---------~~~~~~~~~~h~~llAHa~Av~~~k~~~~~~~~~kVG~~~~~ 248 (375)
|++|+|||||++++..||..|.+|||... ++.++.++++||+++|||+||+++|++++..++++||++++.
T Consensus 179 Vk~WiT~NEP~~~~~~gy~~G~~~Pg~~~~~~~~~~~~~~~~~~~~a~hn~llAHa~A~~~~~~~~~~~~~~~IGi~~~~ 258 (503)
T PLN02849 179 VKFWTTINEANIFTIGGYNDGITPPGRCSSPGRNCSSGNSSTEPYIVGHNLLLAHASVSRLYKQKYKDMQGGSIGFSLFA 258 (503)
T ss_pred CCEEEEecchhhhhhchhhhccCCCCccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCEEEEEEEC
Confidence 99999999999999999999999999631 123468999999999999999999997543468999999999
Q ss_pred CccccCCCCHHHHHHHHHhhhhhccccccceecCCCchHHHhhhccCCCCCCHhHHHHhcCCCcEEEEccccccccccc
Q 017199 249 EWAEANSDKIEDKSAAARRLDFQIGWYLHPIYYGDYPEVMRNNLGDQLPKFMQKDKELVRNSLDFVGLNHYTSRFIAHA 327 (375)
Q Consensus 249 ~~~~P~~~~~~D~~Aa~~~~~~~~~~flD~i~~G~YP~~~~~~l~~~~p~~t~ed~~~ikg~~DFiGiNYYts~~V~~~ 327 (375)
.++||.+++|+|+.||++.+++.++||+||+++|+||+.|++.++.++|.++++|+++|++++||||||||+|.+|+..
T Consensus 259 ~~~~P~~~~~~D~~AA~~~~~~~~~~f~dp~~~G~YP~~~~~~l~~~lp~~~~~d~~~i~~~~DFlGiNyYt~~~v~~~ 337 (503)
T PLN02849 259 LGFTPSTSSKDDDIATQRAKDFYLGWMLEPLIFGDYPDEMKRTIGSRLPVFSKEESEQVKGSSDFIGVIHYLAASVTNI 337 (503)
T ss_pred ceeecCCCCHHHHHHHHHHHHHhhhhhhHHHhCCCccHHHHHHHhcCCCCCCHHHHHHhcCCCCEEEEeccchhhcccC
Confidence 9999999999999999999999999999999999999999999988899999999999999999999999999999864
No 4
>COG2723 BglB Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2.1e-90 Score=688.02 Aligned_cols=302 Identities=42% Similarity=0.774 Sum_probs=284.1
Q ss_pred CCCCCCCeehhhhccccccCccCCCCCCCceeeeccc--cCCccccCCCCCccCCcccCcHHHHHHHHHcCCCeEEeccc
Q 017199 22 TDFPPNFVFGVATSAYQIEGACEEGNRGASIWDDFTH--TEGKIIDKSNGDVAVDHYHRYKEDIDLIAKLGFDAYRFSIS 99 (375)
Q Consensus 22 ~~fp~~FlwG~atsa~QvEG~~~~~g~~~s~wd~~~~--~~~~~~~~~~~~~a~~~~~~y~eDi~l~~~lG~~~~R~si~ 99 (375)
.+||++|+||+||||+|+||++++||||+|+||.|.+ .++++..+..++.||||||||+|||+|||+||+|+|||||+
T Consensus 2 ~~FPkdFlWG~AtAa~Q~EGa~~~dGkg~s~wD~~~~~~~~~~~~~~~~~~~a~d~YhrYkeDi~L~~emG~~~~R~SI~ 81 (460)
T COG2723 2 LKFPKDFLWGGATAAFQVEGAWNEDGKGPSDWDVWVHDEIPGRLVSGDPPEEASDFYHRYKEDIALAKEMGLNAFRTSIE 81 (460)
T ss_pred CCCCCCCeeecccccccccCCcCCCCCCCeeeeeeeccccCCcccCCCCCccccchhhhhHHHHHHHHHcCCCEEEeeee
Confidence 4799999999999999999999999999999999999 46777777889999999999999999999999999999999
Q ss_pred ccccccCCCCCcCChhHHHHHHHHHHHHHHcCCeeEEEeccCCCchhHHhhcCCCCCHHHHHHHHHHHHHHHHHcCCCcc
Q 017199 100 WSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLPLHLHESMGGWLNKEIVKYFEIYADTCFASFGDRVK 179 (375)
Q Consensus 100 W~ri~P~~~g~~~n~~~l~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~gg~~~~~~~~~f~~ya~~~~~~~~d~V~ 179 (375)
||||+|++++..+|++||+||+++||+|+++||+|+|||+|||+|+||+++||||.||+++++|++||++||+||||+|+
T Consensus 82 WsRIfP~g~~~e~N~~gl~fY~~l~del~~~gIep~vTL~Hfd~P~~L~~~ygGW~nR~~i~~F~~ya~~vf~~f~dkVk 161 (460)
T COG2723 82 WSRIFPNGDGGEVNEKGLRFYDRLFDELKARGIEPFVTLYHFDLPLWLQKPYGGWENRETVDAFARYAATVFERFGDKVK 161 (460)
T ss_pred EEEeecCCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEecccCCcHHHhhccCCccCHHHHHHHHHHHHHHHHHhcCcce
Confidence 99999998544799999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEeccccchhhcccccccccCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHhhcCCCCceEEEEecCCccccCCCCHH
Q 017199 180 NWITINEPLQTAVNGYCTGIFAPGRHQHSSTEPYLVAHHQILAHAAAFSVYQRKYKDKQGGNIGLVVDCEWAEANSDKIE 259 (375)
Q Consensus 180 ~w~t~NEp~~~~~~gy~~g~~~p~~~~~~~~~~~~~~h~~llAHa~Av~~~k~~~~~~~~~kVG~~~~~~~~~P~~~~~~ 259 (375)
+|+||||||+++..||+.|.+||+.. +.+.++||+||+++|||+|++++|++.+ +.+|||+++.++.||.+++|+
T Consensus 162 ~W~TFNE~n~~~~~~y~~~~~~p~~~--~~~~~~qa~hh~~lA~A~avk~~~~~~~---~~kIG~~~~~~p~YP~s~~p~ 236 (460)
T COG2723 162 YWFTFNEPNVVVELGYLYGGHPPGIV--DPKAAYQVAHHMLLAHALAVKAIKKINP---KGKVGIILNLTPAYPLSDKPE 236 (460)
T ss_pred EEEEecchhhhhcccccccccCCCcc--CHHHHHHHHHHHHHHHHHHHHHHHhhCC---cCceEEEeccCcCCCCCCCHH
Confidence 99999999999999999999999985 3788999999999999999999999864 449999999999999999999
Q ss_pred HHHHHHHhhhhhccccccceecCCCchHHHhhhccC--CCCCCHhHHHHhcC-CCcEEEEcccc-cccccccC
Q 017199 260 DKSAAARRLDFQIGWYLHPIYYGDYPEVMRNNLGDQ--LPKFMQKDKELVRN-SLDFVGLNHYT-SRFIAHAT 328 (375)
Q Consensus 260 D~~Aa~~~~~~~~~~flD~i~~G~YP~~~~~~l~~~--~p~~t~ed~~~ikg-~~DFiGiNYYt-s~~V~~~~ 328 (375)
|+.||++++++.|++|+||+++|.||.++.+.+++. +|.++++|+++|+. ++||||||||+ +.+++..+
T Consensus 237 dv~aA~~~~~~~n~~FlD~~~~G~yp~~~~~~~~~~~~~~~~~~~Dl~~lk~~~~DfiG~NYY~~s~v~~~~~ 309 (460)
T COG2723 237 DVKAAENADRFHNRFFLDAQVKGEYPEYLEKELEENGILPEIEDGDLEILKENTVDFIGLNYYTPSRVKAAEP 309 (460)
T ss_pred HHHHHHHHHHHhhhhhcchhhcCcCCHHHHHHHHhcCCCcccCcchHHHHhcCCCCeEEEeeeeeeeEeeccC
Confidence 999999999999999999999999999999999765 69999999999975 79999999999 55555544
No 5
>PLN02814 beta-glucosidase
Probab=100.00 E-value=5.9e-90 Score=705.74 Aligned_cols=303 Identities=46% Similarity=0.876 Sum_probs=282.1
Q ss_pred CCCCCCCCCCeehhhhccccccCccCCCCCCCceeeeccccCCccccCCCCCccCCcccCcHHHHHHHHHcCCCeEEecc
Q 017199 19 VSKTDFPPNFVFGVATSAYQIEGACEEGNRGASIWDDFTHTEGKIIDKSNGDVAVDHYHRYKEDIDLIAKLGFDAYRFSI 98 (375)
Q Consensus 19 ~~~~~fp~~FlwG~atsa~QvEG~~~~~g~~~s~wd~~~~~~~~~~~~~~~~~a~~~~~~y~eDi~l~~~lG~~~~R~si 98 (375)
+.+.+||++|+||+|||||||||+++++|||+|+||++++. .++.++++||||||||+|||+|||+||+++|||||
T Consensus 23 ~~~~~fP~~FlwG~AtaA~QiEGa~~~~gkg~siwD~~~~~----~~~~~~~~a~D~Yhry~EDI~L~k~lG~~ayRfSI 98 (504)
T PLN02814 23 FTRNDFPEDFLFGAATSAYQWEGAVDEDGRTPSVWDTTSHC----YNGGNGDIASDGYHKYKEDVKLMAEMGLESFRFSI 98 (504)
T ss_pred cccccCCCCCEEeeechhhhhcCCcCCCCCccchhheeeec----cCCCCCCccccHHHhhHHHHHHHHHcCCCEEEEec
Confidence 44567999999999999999999999999999999998873 23458889999999999999999999999999999
Q ss_pred cccccccCCCCCcCChhHHHHHHHHHHHHHHcCCeeEEEeccCCCchhHHhhcCCCCCHHHHHHHHHHHHHHHHHcCCCc
Q 017199 99 SWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLPLHLHESMGGWLNKEIVKYFEIYADTCFASFGDRV 178 (375)
Q Consensus 99 ~W~ri~P~~~g~~~n~~~l~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~gg~~~~~~~~~f~~ya~~~~~~~~d~V 178 (375)
+||||+|+|+| .+|++||+||+++|++|+++||+|+|||+|||+|+||+++||||.|+++++.|++||+.|+++|||+|
T Consensus 99 sWsRI~P~G~g-~~N~~Gl~fY~~lId~l~~~GI~P~VTL~H~dlP~~L~~~yGGW~n~~~i~~F~~YA~~~f~~fgdrV 177 (504)
T PLN02814 99 SWSRLIPNGRG-LINPKGLLFYKNLIKELRSHGIEPHVTLYHYDLPQSLEDEYGGWINRKIIEDFTAFADVCFREFGEDV 177 (504)
T ss_pred cHhhcCcCCCC-CCCHHHHHHHHHHHHHHHHcCCceEEEecCCCCCHHHHHhcCCcCChhHHHHHHHHHHHHHHHhCCcC
Confidence 99999999878 89999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEeccccchhhcccccccccCCCCCC----------CCCchHHHHHHHHHHHHHHHHHHHHHhhcCCCCceEEEEecC
Q 017199 179 KNWITINEPLQTAVNGYCTGIFAPGRHQ----------HSSTEPYLVAHHQILAHAAAFSVYQRKYKDKQGGNIGLVVDC 248 (375)
Q Consensus 179 ~~w~t~NEp~~~~~~gy~~g~~~p~~~~----------~~~~~~~~~~h~~llAHa~Av~~~k~~~~~~~~~kVG~~~~~ 248 (375)
++|+|||||++++..||..|.. ||... ++.++.++++||+++|||+||+++|+.++..++++||++++.
T Consensus 178 k~WiT~NEP~~~~~~gy~~G~~-pg~~~~~~~~~~~~~~~~~~~~~a~hn~llAHa~Av~~~~~~~~~~~~g~IGi~~~~ 256 (504)
T PLN02814 178 KLWTTINEATIFAIGSYGQGIR-YGHCSPNKFINCSTGNSCTETYIAGHNMLLAHASASNLYKLKYKSKQRGSIGLSIFA 256 (504)
T ss_pred CEEEeccccchhhhcccccCcC-CCCCCcccccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCeEEEEEeC
Confidence 9999999999999999999885 76421 123468999999999999999999997654578999999999
Q ss_pred CccccCCCCHHHHHHHHHhhhhhccccccceecCCCchHHHhhhccCCCCCCHhHHHHhcCCCcEEEEccccccccccc
Q 017199 249 EWAEANSDKIEDKSAAARRLDFQIGWYLHPIYYGDYPEVMRNNLGDQLPKFMQKDKELVRNSLDFVGLNHYTSRFIAHA 327 (375)
Q Consensus 249 ~~~~P~~~~~~D~~Aa~~~~~~~~~~flD~i~~G~YP~~~~~~l~~~~p~~t~ed~~~ikg~~DFiGiNYYts~~V~~~ 327 (375)
.++||.+++|+|+.||++++++.++||+||+++|+||+.|++.++.++|.++++|+++|++++||||||||+|.+|+..
T Consensus 257 ~~~~P~~~~~~D~~Aa~~~~~~~~~~f~dp~~~G~YP~~~~~~l~~~lp~~~~~d~~~ikg~~DFiGiNyYt~~~v~~~ 335 (504)
T PLN02814 257 FGLSPYTNSKDDEIATQRAKAFLYGWMLKPLVFGDYPDEMKRTLGSRLPVFSEEESEQVKGSSDFVGIIHYTTFYVTNR 335 (504)
T ss_pred ceeecCCCCHHHHHHHHHHHHHhhhhhhHHHhCCCccHHHHHHHhcCCCCCCHHHHHHhcCCCCEEEEcccccceeccC
Confidence 9999999999999999999999999999999999999999999988899999999999999999999999999999753
No 6
>PF00232 Glyco_hydro_1: Glycosyl hydrolase family 1; InterPro: IPR001360 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 1 GH1 from CAZY comprises enzymes with a number of known activities; beta-glucosidase (3.2.1.21 from EC); beta-galactosidase (3.2.1.23 from EC); 6-phospho-beta-galactosidase (3.2.1.85 from EC); 6-phospho-beta-glucosidase (3.2.1.86 from EC); lactase-phlorizin hydrolase (3.2.1.62 from EC), (3.2.1.108 from EC); beta-mannosidase (3.2.1.25 from EC); myrosinase (3.2.1.147 from EC). ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1QVB_A 3AHY_D 2E9L_A 2ZOX_A 2JFE_X 2E9M_A 3FIZ_A 3FIY_A 3CMJ_A 3FJ0_A ....
Probab=100.00 E-value=1.2e-89 Score=700.31 Aligned_cols=340 Identities=49% Similarity=0.884 Sum_probs=297.3
Q ss_pred CCCCCCCeehhhhccccccCccCCCCCCCceeeeccccCCccccCCCCCccCCcccCcHHHHHHHHHcCCCeEEeccccc
Q 017199 22 TDFPPNFVFGVATSAYQIEGACEEGNRGASIWDDFTHTEGKIIDKSNGDVAVDHYHRYKEDIDLIAKLGFDAYRFSISWS 101 (375)
Q Consensus 22 ~~fp~~FlwG~atsa~QvEG~~~~~g~~~s~wd~~~~~~~~~~~~~~~~~a~~~~~~y~eDi~l~~~lG~~~~R~si~W~ 101 (375)
.+||++|+||+|||||||||++++||||+|+||.|++.++++.++.+++.||||||||+|||+|||+||+++|||||+|+
T Consensus 3 ~~fp~~F~wG~atsa~Q~EG~~~~dGkg~s~wd~~~~~~~~~~~~~~~~~a~d~y~~y~eDi~l~~~lg~~~yRfsi~W~ 82 (455)
T PF00232_consen 3 KKFPEDFLWGVATSAYQIEGAWNEDGKGPSIWDTFCHEPGKVEDGSTGDVACDHYHRYKEDIALMKELGVNAYRFSISWS 82 (455)
T ss_dssp GGS-TT-EEEEE--HHHHSSSTTSTTSTTBHHHHHHHSTTSSTTSSSSSSTTGHHHHHHHHHHHHHHHT-SEEEEE--HH
T ss_pred CCCCCCCeEEEeceeccccceecCCCCCcccccccccccceeeccccCcccccchhhhhHHHHHHHhhccceeeeecchh
Confidence 46999999999999999999999999999999999998888888888999999999999999999999999999999999
Q ss_pred ccccCC-CCCcCChhHHHHHHHHHHHHHHcCCeeEEEeccCCCchhHHhhcCCCCCHHHHHHHHHHHHHHHHHcCCCcce
Q 017199 102 RIFPDG-LGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLPLHLHESMGGWLNKEIVKYFEIYADTCFASFGDRVKN 180 (375)
Q Consensus 102 ri~P~~-~g~~~n~~~l~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~gg~~~~~~~~~f~~ya~~~~~~~~d~V~~ 180 (375)
||+|+| .| .+|+++|++|+++|++|+++||+|+|||+|||+|+||++ +|||.|+++++.|++||+.|+++|||+|++
T Consensus 83 Ri~P~g~~g-~~n~~~~~~Y~~~i~~l~~~gi~P~vtL~H~~~P~~l~~-~ggw~~~~~~~~F~~Ya~~~~~~~gd~V~~ 160 (455)
T PF00232_consen 83 RIFPDGFEG-KVNEEGLDFYRDLIDELLENGIEPIVTLYHFDLPLWLED-YGGWLNRETVDWFARYAEFVFERFGDRVKY 160 (455)
T ss_dssp HHSTTSSSS-SS-HHHHHHHHHHHHHHHHTT-EEEEEEESS--BHHHHH-HTGGGSTHHHHHHHHHHHHHHHHHTTTBSE
T ss_pred heeeccccc-ccCHhHhhhhHHHHHHHHhhccceeeeeeecccccceee-cccccCHHHHHHHHHHHHHHHHHhCCCcce
Confidence 999998 78 999999999999999999999999999999999999998 699999999999999999999999999999
Q ss_pred EEeccccchhhcccccccccCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHhhcCCCCceEEEEecCCccccCCCCHHH
Q 017199 181 WITINEPLQTAVNGYCTGIFAPGRHQHSSTEPYLVAHHQILAHAAAFSVYQRKYKDKQGGNIGLVVDCEWAEANSDKIED 260 (375)
Q Consensus 181 w~t~NEp~~~~~~gy~~g~~~p~~~~~~~~~~~~~~h~~llAHa~Av~~~k~~~~~~~~~kVG~~~~~~~~~P~~~~~~D 260 (375)
|+|||||++.+..||+.|.+|||. .+.+..++++||+++|||+|++++|++. ++++||++++..+++|.+++++|
T Consensus 161 w~T~NEp~~~~~~~y~~g~~~p~~--~~~~~~~~~~h~~l~AHa~A~~~~~~~~---~~~~IGi~~~~~~~~P~~~~~~d 235 (455)
T PF00232_consen 161 WITFNEPNVFALLGYLYGGFPPGR--DSLKAFYQAAHNLLLAHAKAVKAIKEKY---PDGKIGIALNFSPFYPLSPSPED 235 (455)
T ss_dssp EEEEETHHHHHHHHHTSSSSTTCS--STHHHHHHHHHHHHHHHHHHHHHHHHHT---CTSEEEEEEEEEEEEESSSSHHH
T ss_pred EEeccccceeeccccccccccccc--cccchhhHHHhhHHHHHHHHHHHHhhcc---cceEEeccccccccCCCCccchh
Confidence 999999999999999999999995 4678899999999999999999999987 49999999999999999988877
Q ss_pred H-HHHHHhhhhhccccccceecCCCchHHHhhhccC--CCCCCHhHHHHhcCCCcEEEEcccccccccccCCCCCCCCCc
Q 017199 261 K-SAAARRLDFQIGWYLHPIYYGDYPEVMRNNLGDQ--LPKFMQKDKELVRNSLDFVGLNHYTSRFIAHATKSPEEGSFY 337 (375)
Q Consensus 261 ~-~Aa~~~~~~~~~~flD~i~~G~YP~~~~~~l~~~--~p~~t~ed~~~ikg~~DFiGiNYYts~~V~~~~~~~~~~~~~ 337 (375)
. .||++.+++.|+||+||+++|+||..|+..++++ +|.||++|++.|++++||||||||++.+|+..+..... +..
T Consensus 236 ~~~Aa~~~~~~~n~~f~dpi~~G~YP~~~~~~~~~~~~lp~ft~ed~~~ikg~~DFlGiNYYt~~~v~~~~~~~~~-~~~ 314 (455)
T PF00232_consen 236 DVAAAERADEFHNGWFLDPIFKGDYPEEMKEYLGERGILPEFTEEDKELIKGSIDFLGINYYTSRYVRADPNPSSP-PSY 314 (455)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHHSSSEHHHHHHHGGGTSSTTSGHHHHHHHTTTTSEEEEEESEEEEEEESSSSTSS-TTH
T ss_pred hHHHHHHHHHHhhcccccCchhhcCChHHhhccccccccccccchhhhcccccchhhhhccccceeeccCcccccc-ccc
Confidence 6 8999999999999999999999999999999887 99999999999999999999999999999988744322 122
Q ss_pred cccceeEEeeecCCeeecCCCCCcceEEccCccccc
Q 017199 338 EAQEMERLVEWEGGEVIGEKHPNGFMLFHGAFGRFL 373 (375)
Q Consensus 338 ~~~~~~~~~~~~~g~~ig~~~~~~w~~~~~~~~~~~ 373 (375)
..+....... .+.++.++..|...-.+++.+|
T Consensus 315 ~~~~~~~~~~----~~~~~~t~~gw~i~P~Gl~~~L 346 (455)
T PF00232_consen 315 DSDAPFGQPY----NPGGPTTDWGWEIYPEGLRDVL 346 (455)
T ss_dssp EEEESEEEEC----ETSSEBCTTSTBBETHHHHHHH
T ss_pred cCCccccccc----cccccccccCcccccchHhhhh
Confidence 2111111111 3556677788888877777665
No 7
>TIGR01233 lacG 6-phospho-beta-galactosidase. This enzyme is part of the tagatose-6-phosphate pathway of galactose-6-phosphate degradation.
Probab=100.00 E-value=1.1e-87 Score=685.39 Aligned_cols=294 Identities=31% Similarity=0.576 Sum_probs=273.6
Q ss_pred CCCCCCeehhhhccccccCccCCCCCCCceeeeccccCCccccCCCCCccCCcccCcHHHHHHHHHcCCCeEEecccccc
Q 017199 23 DFPPNFVFGVATSAYQIEGACEEGNRGASIWDDFTHTEGKIIDKSNGDVAVDHYHRYKEDIDLIAKLGFDAYRFSISWSR 102 (375)
Q Consensus 23 ~fp~~FlwG~atsa~QvEG~~~~~g~~~s~wd~~~~~~~~~~~~~~~~~a~~~~~~y~eDi~l~~~lG~~~~R~si~W~r 102 (375)
+||++|+||+|||||||||+++++|||+|+||.+.+.+++ .++++||||||||+|||+||++||+++|||||+|||
T Consensus 3 ~fP~~FlwG~AtsA~QvEG~~~~~Gkg~siwD~~~~~~~~----~~~~~a~d~yhry~eDi~L~~~lG~~~yRfSIsWsR 78 (467)
T TIGR01233 3 TLPKDFIFGGATAAYQAEGATHTDGKGPVAWDKYLEDNYW----YTAEPASDFYHKYPVDLELAEEYGVNGIRISIAWSR 78 (467)
T ss_pred CCCCCCEEeeechhhhcCCCcCCCCCcCchhhccccCCCC----CCCCccCchhhhHHHHHHHHHHcCCCEEEEecchhh
Confidence 5999999999999999999999999999999998865443 367889999999999999999999999999999999
Q ss_pred cccCCCCCcCChhHHHHHHHHHHHHHHcCCeeEEEeccCCCchhHHhhcCCCCCHHHHHHHHHHHHHHHHHcCCCcceEE
Q 017199 103 IFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLPLHLHESMGGWLNKEIVKYFEIYADTCFASFGDRVKNWI 182 (375)
Q Consensus 103 i~P~~~g~~~n~~~l~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~gg~~~~~~~~~f~~ya~~~~~~~~d~V~~w~ 182 (375)
|+|++.| .+|++||+||+++|++|+++||+|+|||+|||+|+||+++ |||.|++++++|++||++|+++||+ |++|+
T Consensus 79 I~P~g~~-~~N~~gl~~Y~~lid~l~~~GI~P~VTL~H~dlP~~L~~~-GGW~n~~~v~~F~~YA~~~f~~fgd-Vk~Wi 155 (467)
T TIGR01233 79 IFPTGYG-EVNEKGVEFYHKLFAECHKRHVEPFVTLHHFDTPEALHSN-GDFLNRENIEHFIDYAAFCFEEFPE-VNYWT 155 (467)
T ss_pred ccCCCCC-CcCHHHHHHHHHHHHHHHHcCCEEEEeccCCCCcHHHHHc-CCCCCHHHHHHHHHHHHHHHHHhCC-CCEEE
Confidence 9999878 8999999999999999999999999999999999999986 9999999999999999999999998 99999
Q ss_pred eccccchhhcccccccccCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHhhcCCCCceEEEEecCCccccCC-CCHHHH
Q 017199 183 TINEPLQTAVNGYCTGIFAPGRHQHSSTEPYLVAHHQILAHAAAFSVYQRKYKDKQGGNIGLVVDCEWAEANS-DKIEDK 261 (375)
Q Consensus 183 t~NEp~~~~~~gy~~g~~~p~~~~~~~~~~~~~~h~~llAHa~Av~~~k~~~~~~~~~kVG~~~~~~~~~P~~-~~~~D~ 261 (375)
|||||++++..||+.|.+|||.. ...+..++++||+++|||+||+++|++. ++++||++++..++||.+ ++|+|+
T Consensus 156 T~NEP~~~~~~gy~~G~~~Pg~~-~~~~~~~~a~hn~l~AHa~A~~~~~~~~---~~~~IGi~~~~~~~~P~~~~~~~D~ 231 (467)
T TIGR01233 156 TFNEIGPIGDGQYLVGKFPPGIK-YDLAKVFQSHHNMMVSHARAVKLYKDKG---YKGEIGVVHALPTKYPYDPENPADV 231 (467)
T ss_pred EecchhhhhhccchhcccCCCcc-chhHHHHHHHHHHHHHHHHHHHHHHHhC---CCCeEEEEecCceeEECCCCCHHHH
Confidence 99999999999999999999963 1234689999999999999999999974 589999999999999998 899999
Q ss_pred HHHHHhhhhhccccccceecCCCchHHHhhhcc----C--CCCCCHhHHHHh---cCCCcEEEEccccccccccc
Q 017199 262 SAAARRLDFQIGWYLHPIYYGDYPEVMRNNLGD----Q--LPKFMQKDKELV---RNSLDFVGLNHYTSRFIAHA 327 (375)
Q Consensus 262 ~Aa~~~~~~~~~~flD~i~~G~YP~~~~~~l~~----~--~p~~t~ed~~~i---kg~~DFiGiNYYts~~V~~~ 327 (375)
+||++++++.++||+||+++|+||+.|++.++. + .|.++++|+++| ++++||||||||+|.+|+..
T Consensus 232 ~aA~~~~~~~~~~f~d~~~~G~Yp~~~~~~~~~~~~~~~~~~~~~~~d~~~i~~~~~~~DFlGinyYt~~~v~~~ 306 (467)
T TIGR01233 232 RAAELEDIIHNKFILDATYLGHYSDKTMEGVNHILAENGGELDLRDEDFQALDAAKDLNDFLGINYYMSDWMQAF 306 (467)
T ss_pred HHHHHHHHHhhhcccchhhCCCCCHHHHHHHHhhhhccCCCCCCCHHHHHHHhccCCCCCEEEEccccceeeccC
Confidence 999999999899999999999999999987753 2 377999999999 48999999999999999853
No 8
>PRK09593 arb 6-phospho-beta-glucosidase; Reviewed
Probab=100.00 E-value=1.2e-87 Score=686.29 Aligned_cols=300 Identities=32% Similarity=0.555 Sum_probs=272.8
Q ss_pred CCCCCCCeehhhhccccccCccCCCCCCCceeeeccccCCccc--c----------C--CCCCccCCcccCcHHHHHHHH
Q 017199 22 TDFPPNFVFGVATSAYQIEGACEEGNRGASIWDDFTHTEGKII--D----------K--SNGDVAVDHYHRYKEDIDLIA 87 (375)
Q Consensus 22 ~~fp~~FlwG~atsa~QvEG~~~~~g~~~s~wd~~~~~~~~~~--~----------~--~~~~~a~~~~~~y~eDi~l~~ 87 (375)
.+||++|+||+|||||||||++++||||+|+||+|++.++++. . + .++++||||||||+|||+||+
T Consensus 4 ~~fP~~FlwG~AtsA~QiEGa~~~~Gkg~siwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~d~Yhry~eDi~Lm~ 83 (478)
T PRK09593 4 MPFPKGFLWGGATAANQCEGAYNVDGRGLANVDVVPIGEDRFPIITGEKKMFDFEEGYFYPAKEAIDMYHHYKEDIALFA 83 (478)
T ss_pred ccCCCCCEEeeechHHHhCCCcCCCCCccchhhccccCcCcccccccccccccccccccCCCCcccchHHhhHHHHHHHH
Confidence 4699999999999999999999999999999999887555431 1 1 157889999999999999999
Q ss_pred HcCCCeEEecccccccccCCC-CCcCChhHHHHHHHHHHHHHHcCCeeEEEeccCCCchhHHhhcCCCCCHHHHHHHHHH
Q 017199 88 KLGFDAYRFSISWSRIFPDGL-GTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLPLHLHESMGGWLNKEIVKYFEIY 166 (375)
Q Consensus 88 ~lG~~~~R~si~W~ri~P~~~-g~~~n~~~l~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~gg~~~~~~~~~f~~y 166 (375)
+||+++|||||+||||+|+|. | .+|++||+||+++|++|+++||+|+|||+|||+|+||+++||||.|++++++|++|
T Consensus 84 ~lG~~aYRfSIsWsRI~P~G~~~-~~N~~gl~~Y~~lId~L~~~GI~P~VTL~H~dlP~~L~~~~GGW~n~~~v~~F~~Y 162 (478)
T PRK09593 84 EMGFKTYRMSIAWTRIFPKGDEL-EPNEAGLQFYEDIFKECHKYGIEPLVTITHFDCPMHLIEEYGGWRNRKMVGFYERL 162 (478)
T ss_pred HcCCCEEEEecchhhcccCCCCC-CCCHHHHHHHHHHHHHHHHcCCEEEEEecccCCCHHHHhhcCCCCChHHHHHHHHH
Confidence 999999999999999999974 5 69999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCcceEEeccccchhhccccc-ccc-cCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHhhcCCCCceEEE
Q 017199 167 ADTCFASFGDRVKNWITINEPLQTAVNGYC-TGI-FAPGRHQHSSTEPYLVAHHQILAHAAAFSVYQRKYKDKQGGNIGL 244 (375)
Q Consensus 167 a~~~~~~~~d~V~~w~t~NEp~~~~~~gy~-~g~-~~p~~~~~~~~~~~~~~h~~llAHa~Av~~~k~~~~~~~~~kVG~ 244 (375)
|+.|+++|||+|++|+|||||++++..||. .|. ++||.. +.+..++++||+++|||+|++++|+.. ++++||+
T Consensus 163 A~~~~~~fgdrVk~WiT~NEP~~~~~~~~~~~g~~~~~g~~--~~~~~~~a~h~~llAHa~A~~~~~~~~---~~g~VGi 237 (478)
T PRK09593 163 CRTLFTRYKGLVKYWLTFNEINMILHAPFMGAGLYFEEGEN--KEQVKYQAAHHELVASAIATKIAHEVD---PENKVGC 237 (478)
T ss_pred HHHHHHHhcCcCCEEEeecchhhhhcccccccCcccCCCCc--hhhhHHHHHHHHHHHHHHHHHHHHHhC---CCCeEEE
Confidence 999999999999999999999999988886 454 477642 345689999999999999999999964 5899999
Q ss_pred EecCCccccCCCCHHHHHHHHHhhhhhccccccceecCCCchHHHhhhcc--CCCCCCHhHHHHhc-CCCcEEEEccccc
Q 017199 245 VVDCEWAEANSDKIEDKSAAARRLDFQIGWYLHPIYYGDYPEVMRNNLGD--QLPKFMQKDKELVR-NSLDFVGLNHYTS 321 (375)
Q Consensus 245 ~~~~~~~~P~~~~~~D~~Aa~~~~~~~~~~flD~i~~G~YP~~~~~~l~~--~~p~~t~ed~~~ik-g~~DFiGiNYYts 321 (375)
+++..++||.+++|+|++||++.+ +.+++|+||+++|+||+.|+..++. ..|.|+++|+++|+ +++||||||||+|
T Consensus 238 ~~~~~~~~P~~~~~~D~~aa~~~~-~~~~~fld~~~~G~YP~~~~~~~~~~~~~~~~~~~d~~~ik~g~~DFlGiNyYt~ 316 (478)
T PRK09593 238 MLAAGQYYPNTCHPEDVWAAMKED-RENYFFIDVQARGEYPNYAKKRFEREGITIEMTEEDLELLKENTVDFISFSYYSS 316 (478)
T ss_pred EEeCCeeEeCCCCHHHHHHHHHHH-HHhhhhhhhhhCCCccHHHHHHHHhcCCCCCCCHHHHHHHhcCCCCEEEEecccC
Confidence 999999999999999999999987 4578999999999999999999875 35789999999996 8999999999999
Q ss_pred ccccccC
Q 017199 322 RFIAHAT 328 (375)
Q Consensus 322 ~~V~~~~ 328 (375)
.+|+..+
T Consensus 317 ~~v~~~~ 323 (478)
T PRK09593 317 RVASGDP 323 (478)
T ss_pred cccccCC
Confidence 9998643
No 9
>PRK13511 6-phospho-beta-galactosidase; Provisional
Probab=100.00 E-value=1.1e-87 Score=686.45 Aligned_cols=294 Identities=34% Similarity=0.607 Sum_probs=273.8
Q ss_pred CCCCCCeehhhhccccccCccCCCCCCCceeeeccccCCccccCCCCCccCCcccCcHHHHHHHHHcCCCeEEecccccc
Q 017199 23 DFPPNFVFGVATSAYQIEGACEEGNRGASIWDDFTHTEGKIIDKSNGDVAVDHYHRYKEDIDLIAKLGFDAYRFSISWSR 102 (375)
Q Consensus 23 ~fp~~FlwG~atsa~QvEG~~~~~g~~~s~wd~~~~~~~~~~~~~~~~~a~~~~~~y~eDi~l~~~lG~~~~R~si~W~r 102 (375)
+||++|+||+|||||||||++++||||+|+||++++.+++ .++++||||||||+|||+||++||+++|||||+|||
T Consensus 4 ~fP~~FlwG~Atsa~QiEG~~~~~Gkg~siwD~~~~~~~~----~~~~~a~d~Y~ry~eDi~L~~~lG~~~yRfSIsWsR 79 (469)
T PRK13511 4 TLPKDFIFGGATAAYQAEGATKTDGKGPVAWDKYLEENYW----FTPDPASDFYHRYPEDLKLAEEFGVNGIRISIAWSR 79 (469)
T ss_pred CCCCCCEEEeechHhhhcCCcCCCCCccchhhcccccCCC----CCCCcccchhhhhHHHHHHHHHhCCCEEEeeccHhh
Confidence 5999999999999999999999999999999999875554 268899999999999999999999999999999999
Q ss_pred cccCCCCCcCChhHHHHHHHHHHHHHHcCCeeEEEeccCCCchhHHhhcCCCCCHHHHHHHHHHHHHHHHHcCCCcceEE
Q 017199 103 IFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLPLHLHESMGGWLNKEIVKYFEIYADTCFASFGDRVKNWI 182 (375)
Q Consensus 103 i~P~~~g~~~n~~~l~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~gg~~~~~~~~~f~~ya~~~~~~~~d~V~~w~ 182 (375)
|+|+|+| .+|++||+||+++|++|+++||+|+|||+|||+|+||+++ |||.|+++++.|++||+.|+++||| |++|+
T Consensus 80 I~P~G~g-~vN~~gl~~Y~~lid~l~~~GI~P~VTL~H~dlP~~L~~~-GGW~n~~~v~~F~~YA~~~~~~fgd-Vk~W~ 156 (469)
T PRK13511 80 IFPDGYG-EVNPKGVEYYHRLFAECHKRHVEPFVTLHHFDTPEALHSN-GDWLNRENIDHFVRYAEFCFEEFPE-VKYWT 156 (469)
T ss_pred cCcCCCC-CcCHHHHHHHHHHHHHHHHcCCEEEEEecCCCCcHHHHHc-CCCCCHHHHHHHHHHHHHHHHHhCC-CCEEE
Confidence 9999878 8999999999999999999999999999999999999986 9999999999999999999999999 99999
Q ss_pred eccccchhhcccccccccCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHhhcCCCCceEEEEecCCccccCC-CCHHHH
Q 017199 183 TINEPLQTAVNGYCTGIFAPGRHQHSSTEPYLVAHHQILAHAAAFSVYQRKYKDKQGGNIGLVVDCEWAEANS-DKIEDK 261 (375)
Q Consensus 183 t~NEp~~~~~~gy~~g~~~p~~~~~~~~~~~~~~h~~llAHa~Av~~~k~~~~~~~~~kVG~~~~~~~~~P~~-~~~~D~ 261 (375)
|||||++++..||..|.+|||... +.+..++++||+++|||+||+++|+.. ++++||++++..+++|.+ ++|+|+
T Consensus 157 T~NEP~~~~~~gy~~G~~~Pg~~~-~~~~~~~~~hn~llAHa~A~~~~~~~~---~~g~IGi~~~~~~~~P~~~~~~~d~ 232 (469)
T PRK13511 157 TFNEIGPIGDGQYLVGKFPPGIKY-DLAKVFQSHHNMMVAHARAVKLFKDKG---YKGEIGVVHALPTKYPIDPDNPEDV 232 (469)
T ss_pred EccchhhhhhcchhhcccCCCCCc-cHHHHHHHHHHHHHHHHHHHHHHHHhC---CCCeEEEEecCceEeeCCCCCHHHH
Confidence 999999999999999999999742 234689999999999999999999974 589999999999999999 999999
Q ss_pred HHHHHhhhhhccccccceecCCCchHHHhhhcc------CCCCCCHhHHHHhcC---CCcEEEEccccccccccc
Q 017199 262 SAAARRLDFQIGWYLHPIYYGDYPEVMRNNLGD------QLPKFMQKDKELVRN---SLDFVGLNHYTSRFIAHA 327 (375)
Q Consensus 262 ~Aa~~~~~~~~~~flD~i~~G~YP~~~~~~l~~------~~p~~t~ed~~~ikg---~~DFiGiNYYts~~V~~~ 327 (375)
.||++.+++.++||+||+++|+||+.|++.++. ..+.|+++|+++|++ ++||||||||+|.+|+..
T Consensus 233 ~aa~~~~~~~~~~f~dp~~~G~Yp~~~~~~~~~~~~~~~~~l~~t~~d~~~ik~~~~~~DFiGiNyYt~~~v~~~ 307 (469)
T PRK13511 233 RAAELEDIIHNKFILDATYLGYYSEETMEGVNHILEANGGSLDIRDEDFEILKAAKDLNDFLGINYYMSDWMRAY 307 (469)
T ss_pred HHHHHHHHHhhhcccchhhCCCCCHHHHHHHHHhhhhcCCCCCCCHHHHHHHhcCCCCCCEEEechhhcceeecC
Confidence 999999999999999999999999999987641 124799999999964 689999999999999863
No 10
>PRK09589 celA 6-phospho-beta-glucosidase; Reviewed
Probab=100.00 E-value=5.5e-87 Score=681.18 Aligned_cols=299 Identities=32% Similarity=0.584 Sum_probs=268.6
Q ss_pred CCCCCCeehhhhccccccCccCCCCCCCceeeecc---c-cCCccc----cCC--CCCccCCcccCcHHHHHHHHHcCCC
Q 017199 23 DFPPNFVFGVATSAYQIEGACEEGNRGASIWDDFT---H-TEGKII----DKS--NGDVAVDHYHRYKEDIDLIAKLGFD 92 (375)
Q Consensus 23 ~fp~~FlwG~atsa~QvEG~~~~~g~~~s~wd~~~---~-~~~~~~----~~~--~~~~a~~~~~~y~eDi~l~~~lG~~ 92 (375)
+||++|+||+|||||||||++++||||+|+||+++ + .++++. ++. ++++||||||||+|||+|||+||++
T Consensus 3 ~fP~~FlwG~AtsA~QiEGa~~~~gkg~siwD~~~~~~~~~~~~~~~~~~~~~~~~~~~a~D~Yhry~eDi~Lm~~lG~~ 82 (476)
T PRK09589 3 GFKKGFLWGGAVAAHQLEGGWNEGGKGISVADVMTAGAHGVPREITEGVIEGKNYPNHEAIDFYHRYKEDIALFAEMGFK 82 (476)
T ss_pred CCCCCCEEeeechHhhhcCCcCCCCCCCchhcccccccccCccccccCccCCCcCCCcccccHHHhhHHHHHHHHHcCCC
Confidence 59999999999999999999999999999999998 3 244432 222 5788999999999999999999999
Q ss_pred eEEecccccccccCCCCCcCChhHHHHHHHHHHHHHHcCCeeEEEeccCCCchhHHhhcCCCCCHHHHHHHHHHHHHHHH
Q 017199 93 AYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLPLHLHESMGGWLNKEIVKYFEIYADTCFA 172 (375)
Q Consensus 93 ~~R~si~W~ri~P~~~g~~~n~~~l~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~gg~~~~~~~~~f~~ya~~~~~ 172 (375)
+|||||+||||+|+|.+..+|++||+||+++|++|+++||+|+|||+|||+|+||+++||||.|+++++.|++||+.|++
T Consensus 83 ~yRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lid~L~~~GI~P~VTL~H~dlP~~L~~~yGGW~n~~~i~~F~~YA~~~f~ 162 (476)
T PRK09589 83 CFRTSIAWTRIFPQGDELEPNEEGLQFYDDLFDECLKQGIEPVVTLSHFEMPYHLVTEYGGWRNRKLIDFFVRFAEVVFT 162 (476)
T ss_pred EEEeccchhhcCcCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCCCHHHHHhcCCcCChHHHHHHHHHHHHHHH
Confidence 99999999999999743268999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCCcceEEeccccchhhcc-----ccc-ccc-cCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHhhcCCCCceEEEE
Q 017199 173 SFGDRVKNWITINEPLQTAVN-----GYC-TGI-FAPGRHQHSSTEPYLVAHHQILAHAAAFSVYQRKYKDKQGGNIGLV 245 (375)
Q Consensus 173 ~~~d~V~~w~t~NEp~~~~~~-----gy~-~g~-~~p~~~~~~~~~~~~~~h~~llAHa~Av~~~k~~~~~~~~~kVG~~ 245 (375)
+|||+|++|+|||||++++.. ||. .|. +|||.. .....++++||+++|||+|++++|+.. ++++||++
T Consensus 163 ~fgdrVk~WiT~NEp~~~~~~~~~~~~~~~~g~~~~pg~~--~~~~~~~~~h~~llAha~A~~~~~~~~---~~~~iG~~ 237 (476)
T PRK09589 163 RYKDKVKYWMTFNEINNQANFSEDFAPFTNSGILYSPGED--REQIMYQAAHYELVASALAVKTGHEIN---PDFQIGCM 237 (476)
T ss_pred HhcCCCCEEEEecchhhhhccccccCCccccccccCCCCc--hhHHHHHHHHHHHHHHHHHHHHHHHhC---CCCcEEEE
Confidence 999999999999999998766 555 454 377642 234579999999999999999999975 48899999
Q ss_pred ecCCccccCCCCHHHHHHHHHhhhhhccccccceecCCCchHHHhhhccC--CCCCCHhHHHHh-cCCCcEEEEcccccc
Q 017199 246 VDCEWAEANSDKIEDKSAAARRLDFQIGWYLHPIYYGDYPEVMRNNLGDQ--LPKFMQKDKELV-RNSLDFVGLNHYTSR 322 (375)
Q Consensus 246 ~~~~~~~P~~~~~~D~~Aa~~~~~~~~~~flD~i~~G~YP~~~~~~l~~~--~p~~t~ed~~~i-kg~~DFiGiNYYts~ 322 (375)
++..++||.+++|+|++||++++.+ +.||+||+++|+||+.|++.++++ .|.||++|+++| ++++||||||||+|.
T Consensus 238 ~~~~~~~P~~~~~~d~~aa~~~~~~-~~~f~d~~~~G~YP~~~~~~~~~~~~~~~~t~~d~~~l~~g~~DFlGiNyYts~ 316 (476)
T PRK09589 238 IAMCPIYPLTCAPNDMMMATKAMHR-RYWFTDVHVRGYYPQHILNYFARKGFNLDITPEDNAILAEGCVDYIGFSYYMSF 316 (476)
T ss_pred EeCCeeeeCCCCHHHHHHHHHHHHh-ccceecceeCCCCcHHHHHHHHhcCCCCCCCHHHHHHHhcCCCCEEEEecccCc
Confidence 9999999999999999999998854 679999999999999999999764 478999999999 589999999999999
Q ss_pred ccccc
Q 017199 323 FIAHA 327 (375)
Q Consensus 323 ~V~~~ 327 (375)
+|+..
T Consensus 317 ~v~~~ 321 (476)
T PRK09589 317 ATKFH 321 (476)
T ss_pred ccccC
Confidence 99753
No 11
>PRK15014 6-phospho-beta-glucosidase BglA; Provisional
Probab=100.00 E-value=3.1e-86 Score=675.30 Aligned_cols=302 Identities=31% Similarity=0.570 Sum_probs=269.9
Q ss_pred CCCCCCCCCeehhhhccccccCccCCCCCCCceeeecc---c-cCCccc----cC--CCCCccCCcccCcHHHHHHHHHc
Q 017199 20 SKTDFPPNFVFGVATSAYQIEGACEEGNRGASIWDDFT---H-TEGKII----DK--SNGDVAVDHYHRYKEDIDLIAKL 89 (375)
Q Consensus 20 ~~~~fp~~FlwG~atsa~QvEG~~~~~g~~~s~wd~~~---~-~~~~~~----~~--~~~~~a~~~~~~y~eDi~l~~~l 89 (375)
++.+||++|+||+|||||||||++++||||+|+||+++ + .++++. ++ .++++||||||||+|||+||++|
T Consensus 2 ~~~~FP~~FlwG~AtsA~QiEGa~~e~Gkg~siwD~~~~~~~~~~~~~~~~~~~~~~~~~~~A~D~Yhry~EDI~Lm~el 81 (477)
T PRK15014 2 KKLTLPKDFLWGGAVAAHQVEGGWNKGGKGPSICDVLTGGAHGVPREITKEVVPGKYYPNHEAVDFYGHYKEDIKLFAEM 81 (477)
T ss_pred CcCCCCCCCEEeeecHHHHhCCCcCCCCCcccHhhccccccccCccccccccccCCcCCCCcccCcccccHHHHHHHHHc
Confidence 45679999999999999999999999999999999988 4 244431 22 26788999999999999999999
Q ss_pred CCCeEEecccccccccCCCCCcCChhHHHHHHHHHHHHHHcCCeeEEEeccCCCchhHHhhcCCCCCHHHHHHHHHHHHH
Q 017199 90 GFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLPLHLHESMGGWLNKEIVKYFEIYADT 169 (375)
Q Consensus 90 G~~~~R~si~W~ri~P~~~g~~~n~~~l~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~gg~~~~~~~~~f~~ya~~ 169 (375)
|+++|||||+|+||+|+|.+..+|++||++|+++|++|+++||+|+|||+|||+|+||.++||||.|++++++|++||++
T Consensus 82 G~~~yRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lid~l~~~GI~P~vTL~H~dlP~~L~~~yGGW~n~~~~~~F~~Ya~~ 161 (477)
T PRK15014 82 GFKCFRTSIAWTRIFPKGDEAQPNEEGLKFYDDMFDELLKYNIEPVITLSHFEMPLHLVQQYGSWTNRKVVDFFVRFAEV 161 (477)
T ss_pred CCCEEEecccceeeccCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEeeCCCCCHHHHHhcCCCCChHHHHHHHHHHHH
Confidence 99999999999999999743268999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCCcceEEeccccchh-----hcccccc-ccc-CCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHhhcCCCCceE
Q 017199 170 CFASFGDRVKNWITINEPLQT-----AVNGYCT-GIF-APGRHQHSSTEPYLVAHHQILAHAAAFSVYQRKYKDKQGGNI 242 (375)
Q Consensus 170 ~~~~~~d~V~~w~t~NEp~~~-----~~~gy~~-g~~-~p~~~~~~~~~~~~~~h~~llAHa~Av~~~k~~~~~~~~~kV 242 (375)
|+++|||+|++|+|||||++. +..||.. |.+ ||+. +..+..++++||+++|||+|++++|+.. ++++|
T Consensus 162 ~f~~fgdrVk~WiT~NEp~~~~~~~~~~~gy~~~g~~~~~~~--~~~~~~~~~~h~~llAHa~A~~~~~~~~---~~~~I 236 (477)
T PRK15014 162 VFERYKHKVKYWMTFNEINNQRNWRAPLFGYCCSGVVYTEHE--NPEETMYQVLHHQFVASALAVKAARRIN---PEMKV 236 (477)
T ss_pred HHHHhcCcCCEEEEecCcccccccccccccccccccccCCCC--chhHHHHHHHHHHHHHHHHHHHHHHHhC---CCCeE
Confidence 999999999999999999987 6778874 765 4543 2335689999999999999999999975 48999
Q ss_pred EEEecCCccccCCCCHHHHHHHHHhhhhhccccccceecCCCchHHHhhhccCC--CCCCHhHHHHh-cCCCcEEEEccc
Q 017199 243 GLVVDCEWAEANSDKIEDKSAAARRLDFQIGWYLHPIYYGDYPEVMRNNLGDQL--PKFMQKDKELV-RNSLDFVGLNHY 319 (375)
Q Consensus 243 G~~~~~~~~~P~~~~~~D~~Aa~~~~~~~~~~flD~i~~G~YP~~~~~~l~~~~--p~~t~ed~~~i-kg~~DFiGiNYY 319 (375)
|++++..++||.+++|+|++||++.+. ...+|+||+++|+||+.|++.++++. |.++++|+++| ++++||||||||
T Consensus 237 Gi~~~~~~~~P~~~~~~D~~Aa~~~~~-~~~~f~d~~~~G~YP~~~~~~~~~~~~~~~~~~~d~~~i~~~~~DFlGiNyY 315 (477)
T PRK15014 237 GCMLAMVPLYPYSCNPDDVMFAQESMR-ERYVFTDVQLRGYYPSYVLNEWERRGFNIKMEDGDLDVLREGTCDYLGFSYY 315 (477)
T ss_pred EEEEeCceeccCCCCHHHHHHHHHHHH-hcccccccccCCCCCHHHHHHHHhcCCCCCCCHHHHHHHhcCCCCEEEEcce
Confidence 999999999999999999999998773 22359999999999999999998764 78999999999 589999999999
Q ss_pred cccccccc
Q 017199 320 TSRFIAHA 327 (375)
Q Consensus 320 ts~~V~~~ 327 (375)
+|.+|+..
T Consensus 316 t~~~v~~~ 323 (477)
T PRK15014 316 MTNAVKAE 323 (477)
T ss_pred eCeeeccC
Confidence 99999753
No 12
>PRK09852 cryptic 6-phospho-beta-glucosidase; Provisional
Probab=100.00 E-value=1.6e-85 Score=669.08 Aligned_cols=299 Identities=34% Similarity=0.595 Sum_probs=273.8
Q ss_pred CCCCCCeehhhhccccccCccCCCCCCCceeeeccccCCccc------------cCC--CCCccCCcccCcHHHHHHHHH
Q 017199 23 DFPPNFVFGVATSAYQIEGACEEGNRGASIWDDFTHTEGKII------------DKS--NGDVAVDHYHRYKEDIDLIAK 88 (375)
Q Consensus 23 ~fp~~FlwG~atsa~QvEG~~~~~g~~~s~wd~~~~~~~~~~------------~~~--~~~~a~~~~~~y~eDi~l~~~ 88 (375)
+||++|+||+|||||||||++++||||+|+||++++.++++. ++. ++++||||||||+|||+||++
T Consensus 3 ~FP~~FlwG~AtsA~QiEGa~~~~Gkg~siwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~D~Yhry~eDi~l~~~ 82 (474)
T PRK09852 3 VFPEGFLWGGALAANQSEGAFREGGKGLTTVDMIPHGEHRMAVKLGLEKRFQLRDDEFYPSHEAIDFYHRYKEDIALMAE 82 (474)
T ss_pred CCCCCCEEeccchHhhcCCCcCCCCCCCchhhccccCCCcccccccccccccccccCcCCCCccCchhhhhHHHHHHHHH
Confidence 599999999999999999999999999999999988655442 111 568899999999999999999
Q ss_pred cCCCeEEecccccccccCCCCCcCChhHHHHHHHHHHHHHHcCCeeEEEeccCCCchhHHhhcCCCCCHHHHHHHHHHHH
Q 017199 89 LGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLPLHLHESMGGWLNKEIVKYFEIYAD 168 (375)
Q Consensus 89 lG~~~~R~si~W~ri~P~~~g~~~n~~~l~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~gg~~~~~~~~~f~~ya~ 168 (375)
||+++|||||+|+||+|++.+..+|+++|++|+++|++|+++||+|+|||+|||+|+||+++||||.|+++++.|++||+
T Consensus 83 lG~~~yR~si~WsRi~P~g~~~~~n~~~~~~Y~~~i~~l~~~gi~p~VtL~H~~~P~~l~~~~GGW~~~~~~~~F~~ya~ 162 (474)
T PRK09852 83 MGFKVFRTSIAWSRLFPQGDELTPNQQGIAFYRSVFEECKKYGIEPLVTLCHFDVPMHLVTEYGSWRNRKMVEFFSRYAR 162 (474)
T ss_pred cCCCeEEeeceeeeeeeCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEeeCCCCCHHHHHhcCCCCCHHHHHHHHHHHH
Confidence 99999999999999999974326899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCcceEEeccccchhhccccc-ccc-cCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHhhcCCCCceEEEEe
Q 017199 169 TCFASFGDRVKNWITINEPLQTAVNGYC-TGI-FAPGRHQHSSTEPYLVAHHQILAHAAAFSVYQRKYKDKQGGNIGLVV 246 (375)
Q Consensus 169 ~~~~~~~d~V~~w~t~NEp~~~~~~gy~-~g~-~~p~~~~~~~~~~~~~~h~~llAHa~Av~~~k~~~~~~~~~kVG~~~ 246 (375)
.|+++|||+|++|+||||||+++..||. .|. +||+.. ..+..++++||+++|||+|++++|+..+ +++||+++
T Consensus 163 ~~~~~fgd~Vk~WiTfNEPn~~~~~gy~~~g~~~~p~~~--~~~~~~~~~hn~llAHa~A~~~~~~~~~---~~~IGi~~ 237 (474)
T PRK09852 163 TCFEAFDGLVKYWLTFNEINIMLHSPFSGAGLVFEEGEN--QDQVKYQAAHHELVASALATKIAHEVNP---QNQVGCML 237 (474)
T ss_pred HHHHHhcCcCCeEEeecchhhhhccCccccCcccCCCCC--chHhHHHHHHHHHHHHHHHHHHHHHhCC---CCeEEEEE
Confidence 9999999999999999999999999996 664 588742 3456899999999999999999999754 89999999
Q ss_pred cCCccccCCCCHHHHHHHHHhhhhhccccccceecCCCchHHHhhhccC--CCCCCHhHHHHhcCCCcEEEEcccccccc
Q 017199 247 DCEWAEANSDKIEDKSAAARRLDFQIGWYLHPIYYGDYPEVMRNNLGDQ--LPKFMQKDKELVRNSLDFVGLNHYTSRFI 324 (375)
Q Consensus 247 ~~~~~~P~~~~~~D~~Aa~~~~~~~~~~flD~i~~G~YP~~~~~~l~~~--~p~~t~ed~~~ikg~~DFiGiNYYts~~V 324 (375)
+..++||.+++|+|++||++.+ +.+++|+||+++|+||+.|++.++++ +|.|+++|+++|++++||||||||+|.+|
T Consensus 238 ~~~~~~P~~~~~~d~~AA~~~~-~~~~~~~d~~~~G~YP~~~~~~~~~~~~~p~~~~~d~~~i~~~~DFlGiNyYt~~~v 316 (474)
T PRK09852 238 AGGNFYPYSCKPEDVWAALEKD-RENLFFIDVQARGAYPAYSARVFREKGVTIDKAPGDDEILKNTVDFVSFSYYASRCA 316 (474)
T ss_pred eCCeeeeCCCCHHHHHHHHHHH-HHhhhhcchhhCCCccHHHHHHHHhcCCCCCCCHHHHHHhcCCCCEEEEccccCeec
Confidence 9999999999999999998877 45789999999999999999999764 68999999999999999999999999999
Q ss_pred ccc
Q 017199 325 AHA 327 (375)
Q Consensus 325 ~~~ 327 (375)
+..
T Consensus 317 ~~~ 319 (474)
T PRK09852 317 SAE 319 (474)
T ss_pred ccC
Confidence 863
No 13
>TIGR03356 BGL beta-galactosidase.
Probab=100.00 E-value=3.7e-84 Score=653.91 Aligned_cols=296 Identities=47% Similarity=0.885 Sum_probs=279.9
Q ss_pred CCCCCeehhhhccccccCccCCCCCCCceeeeccccCCccccCCCCCccCCcccCcHHHHHHHHHcCCCeEEeccccccc
Q 017199 24 FPPNFVFGVATSAYQIEGACEEGNRGASIWDDFTHTEGKIIDKSNGDVAVDHYHRYKEDIDLIAKLGFDAYRFSISWSRI 103 (375)
Q Consensus 24 fp~~FlwG~atsa~QvEG~~~~~g~~~s~wd~~~~~~~~~~~~~~~~~a~~~~~~y~eDi~l~~~lG~~~~R~si~W~ri 103 (375)
||++|+||+|||||||||+++++|||+|+||.+.+.++++.++.++++||||||+|+|||++|++||+++|||||+|+||
T Consensus 1 fp~~FlwG~atsa~Q~EG~~~~~gkg~s~wd~~~~~~~~~~~~~~~~~a~d~y~~y~eDi~l~~~~G~~~~R~si~Wsri 80 (427)
T TIGR03356 1 FPKDFLWGVATASYQIEGAVNEDGRGPSIWDTFSHTPGKVKDGDTGDVACDHYHRYEEDVALMKELGVDAYRFSIAWPRI 80 (427)
T ss_pred CCCCCEEeeechHHhhCCCcCCCCCccchhheeccCCCcccCCCCCCccccHHHhHHHHHHHHHHcCCCeEEcccchhhc
Confidence 89999999999999999999999999999999988667665666888999999999999999999999999999999999
Q ss_pred ccCCCCCcCChhHHHHHHHHHHHHHHcCCeeEEEeccCCCchhHHhhcCCCCCHHHHHHHHHHHHHHHHHcCCCcceEEe
Q 017199 104 FPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLPLHLHESMGGWLNKEIVKYFEIYADTCFASFGDRVKNWIT 183 (375)
Q Consensus 104 ~P~~~g~~~n~~~l~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~gg~~~~~~~~~f~~ya~~~~~~~~d~V~~w~t 183 (375)
+|+|+| .+|++++++|+++|++|+++||+|+|||+|||+|+||.++ |||.|+++++.|++||+.|+++||++|++|+|
T Consensus 81 ~p~g~~-~~n~~~~~~y~~~i~~l~~~gi~pivtL~Hfd~P~~l~~~-gGw~~~~~~~~f~~ya~~~~~~~~d~v~~w~t 158 (427)
T TIGR03356 81 FPEGTG-PVNPKGLDFYDRLVDELLEAGIEPFVTLYHWDLPQALEDR-GGWLNRDTAEWFAEYAAVVAERLGDRVKHWIT 158 (427)
T ss_pred ccCCCC-CcCHHHHHHHHHHHHHHHHcCCeeEEeeccCCccHHHHhc-CCCCChHHHHHHHHHHHHHHHHhCCcCCEEEE
Confidence 999768 8999999999999999999999999999999999999988 99999999999999999999999999999999
Q ss_pred ccccchhhcccccccccCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHhhcCCCCceEEEEecCCccccCCCCHHHHHH
Q 017199 184 INEPLQTAVNGYCTGIFAPGRHQHSSTEPYLVAHHQILAHAAAFSVYQRKYKDKQGGNIGLVVDCEWAEANSDKIEDKSA 263 (375)
Q Consensus 184 ~NEp~~~~~~gy~~g~~~p~~~~~~~~~~~~~~h~~llAHa~Av~~~k~~~~~~~~~kVG~~~~~~~~~P~~~~~~D~~A 263 (375)
+|||++.+..||..|.+||+.. +.+..++++||+++|||+|++++|++.| +++||++++..++||.+++|+|+.|
T Consensus 159 ~NEp~~~~~~~y~~G~~~P~~~--~~~~~~~~~hnll~Aha~A~~~~~~~~~---~~~IGi~~~~~~~~P~~~~~~d~~a 233 (427)
T TIGR03356 159 LNEPWCSAFLGYGLGVHAPGLR--DLRAALQAAHHLLLAHGLAVQALRANGP---GAQVGIVLNLTPVYPASDSPEDVAA 233 (427)
T ss_pred ecCcceecccchhhccCCCCCc--cHHHHHHHHHHHHHHHHHHHHHHHHhCC---CCeEEEEEeCCeeeeCCCCHHHHHH
Confidence 9999999999999999999853 2345799999999999999999999764 8999999999999999999999999
Q ss_pred HHHhhhhhccccccceecCCCchHHHhhhccCCCCCCHhHHHHhcCCCcEEEEccccccccccc
Q 017199 264 AARRLDFQIGWYLHPIYYGDYPEVMRNNLGDQLPKFMQKDKELVRNSLDFVGLNHYTSRFIAHA 327 (375)
Q Consensus 264 a~~~~~~~~~~flD~i~~G~YP~~~~~~l~~~~p~~t~ed~~~ikg~~DFiGiNYYts~~V~~~ 327 (375)
|++++++.++||+||+++|+||..|++.++. +|.+|++|+++|++++||||||||+|.+|+..
T Consensus 234 a~~~~~~~~~~f~d~~~~G~yP~~~~~~l~~-~p~~~~~d~~~l~~~~DFiGiNyY~~~~v~~~ 296 (427)
T TIGR03356 234 ARRADGLLNRWFLDPLLKGRYPEDLLEYLGD-APFVQDGDLETIAQPLDFLGINYYTRSVVAAD 296 (427)
T ss_pred HHHHHHHHhhhhhHHHhCCCCCHHHHHHhcc-CCCCCHHHHHHhcCCCCEEEEeccccceeccC
Confidence 9999999999999999999999999999874 69999999999999999999999999999864
No 14
>PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of beta-galactosidase enzymes (3.2.1.23 from EC) belong to the glycosyl hydrolase 42 family GH42 from CAZY. The enzyme catalyses the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1KWK_A 1KWG_A 3U7V_A.
Probab=99.33 E-value=3.7e-12 Score=127.36 Aligned_cols=109 Identities=23% Similarity=0.444 Sum_probs=88.0
Q ss_pred cCcHHHHHHHHHcCCCeEEe-cccccccccCCCCCcCChhHHHHHHHHHHHHHHcCCeeEEEeccCCCchhHHhhc----
Q 017199 77 HRYKEDIDLIAKLGFDAYRF-SISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLPLHLHESM---- 151 (375)
Q Consensus 77 ~~y~eDi~l~~~lG~~~~R~-si~W~ri~P~~~g~~~n~~~l~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~---- 151 (375)
..+++|+++|+++|+|++|+ .++|++|||++ | ++|+ ..+|++|+.+.++||++++.+.+...|.||.+++
T Consensus 10 e~~~~d~~~m~~~G~n~vri~~~~W~~lEP~e-G-~ydF---~~lD~~l~~a~~~Gi~viL~~~~~~~P~Wl~~~~Pe~~ 84 (374)
T PF02449_consen 10 EEWEEDLRLMKEAGFNTVRIGEFSWSWLEPEE-G-QYDF---SWLDRVLDLAAKHGIKVILGTPTAAPPAWLYDKYPEIL 84 (374)
T ss_dssp CHHHHHHHHHHHHT-SEEEE-CCEHHHH-SBT-T-B------HHHHHHHHHHHCTT-EEEEEECTTTS-HHHHCCSGCCC
T ss_pred HHHHHHHHHHHHcCCCEEEEEEechhhccCCC-C-eeec---HHHHHHHHHHHhccCeEEEEecccccccchhhhccccc
Confidence 46899999999999999996 67999999998 9 9997 6799999999999999999999999999998753
Q ss_pred -----------CC-----CCCHHHHHHHHHHHHHHHHHcCCC--cceEEeccccchh
Q 017199 152 -----------GG-----WLNKEIVKYFEIYADTCFASFGDR--VKNWITINEPLQT 190 (375)
Q Consensus 152 -----------gg-----~~~~~~~~~f~~ya~~~~~~~~d~--V~~w~t~NEp~~~ 190 (375)
|+ ..++...+.+.++++.++++|++. |-.|.+.|||...
T Consensus 85 ~~~~~g~~~~~g~~~~~~~~~p~yr~~~~~~~~~l~~~y~~~p~vi~~~i~NE~~~~ 141 (374)
T PF02449_consen 85 PVDADGRRRGFGSRQHYCPNSPAYREYARRFIRALAERYGDHPAVIGWQIDNEPGYH 141 (374)
T ss_dssp -B-TTTSBEECCCSTT-HCCHHHHHHHHHHHHHHHHHHHTTTTTEEEEEECCSTTCT
T ss_pred ccCCCCCcCccCCccccchhHHHHHHHHHHHHHHHHhhccccceEEEEEeccccCcC
Confidence 22 124667788888999999999985 7789999999864
No 15
>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A ....
Probab=99.30 E-value=1e-11 Score=117.72 Aligned_cols=110 Identities=22% Similarity=0.329 Sum_probs=91.3
Q ss_pred CcHHHHHHHHHcCCCeEEecccccccc-cCCCCCcCChhHHHHHHHHHHHHHHcCCeeEEEeccCCCchhHHhhcCCCC-
Q 017199 78 RYKEDIDLIAKLGFDAYRFSISWSRIF-PDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLPLHLHESMGGWL- 155 (375)
Q Consensus 78 ~y~eDi~l~~~lG~~~~R~si~W~ri~-P~~~g~~~n~~~l~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~gg~~- 155 (375)
..++|++.|+++|+|++|+.|.|..++ |.+.+ .++.+.++.++++|+.+.++||.++|+||+. |.|.... +++.
T Consensus 22 ~~~~~~~~~~~~G~n~VRi~v~~~~~~~~~~~~-~~~~~~~~~ld~~v~~a~~~gi~vild~h~~--~~w~~~~-~~~~~ 97 (281)
T PF00150_consen 22 ITEADFDQLKALGFNTVRIPVGWEAYQEPNPGY-NYDETYLARLDRIVDAAQAYGIYVILDLHNA--PGWANGG-DGYGN 97 (281)
T ss_dssp SHHHHHHHHHHTTESEEEEEEESTSTSTTSTTT-SBTHHHHHHHHHHHHHHHHTT-EEEEEEEES--TTCSSST-STTTT
T ss_pred CHHHHHHHHHHCCCCEEEeCCCHHHhcCCCCCc-cccHHHHHHHHHHHHHHHhCCCeEEEEeccC--ccccccc-ccccc
Confidence 578999999999999999999998888 56545 6899999999999999999999999999874 7774332 2333
Q ss_pred CHHHHHHHHHHHHHHHHHcCC--CcceEEeccccchhh
Q 017199 156 NKEIVKYFEIYADTCFASFGD--RVKNWITINEPLQTA 191 (375)
Q Consensus 156 ~~~~~~~f~~ya~~~~~~~~d--~V~~w~t~NEp~~~~ 191 (375)
.....+.|.++++.++++|++ .|..|.++|||....
T Consensus 98 ~~~~~~~~~~~~~~la~~y~~~~~v~~~el~NEP~~~~ 135 (281)
T PF00150_consen 98 NDTAQAWFKSFWRALAKRYKDNPPVVGWELWNEPNGGN 135 (281)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTTTTEEEESSSSGCSTT
T ss_pred chhhHHHHHhhhhhhccccCCCCcEEEEEecCCccccC
Confidence 345678899999999999955 578999999999753
No 16
>smart00633 Glyco_10 Glycosyl hydrolase family 10.
Probab=98.75 E-value=3.1e-08 Score=94.05 Aligned_cols=83 Identities=18% Similarity=0.379 Sum_probs=71.7
Q ss_pred cccccccCCCCCcCChhHHHHHHHHHHHHHHcCCee--EEEeccCCCchhHHhhcCCCCCHHHHHHHHHHHHHHHHHcCC
Q 017199 99 SWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQP--YVTLYHWDLPLHLHESMGGWLNKEIVKYFEIYADTCFASFGD 176 (375)
Q Consensus 99 ~W~ri~P~~~g~~~n~~~l~~y~~~i~~l~~~gi~p--~vtL~H~~~P~~l~~~~gg~~~~~~~~~f~~ya~~~~~~~~d 176 (375)
.|++|+|++ | .+|+ +..|.+++.++++||++ .+.+.|...|.|+... + .++..+.+.+|++.+++||++
T Consensus 2 kW~~~ep~~-G-~~n~---~~~D~~~~~a~~~gi~v~gH~l~W~~~~P~W~~~~-~---~~~~~~~~~~~i~~v~~ry~g 72 (254)
T smart00633 2 KWDSTEPSR-G-QFNF---SGADAIVNFAKENGIKVRGHTLVWHSQTPDWVFNL-S---KETLLARLENHIKTVVGRYKG 72 (254)
T ss_pred CcccccCCC-C-ccCh---HHHHHHHHHHHHCCCEEEEEEEeecccCCHhhhcC-C---HHHHHHHHHHHHHHHHHHhCC
Confidence 699999998 9 9997 66788999999999995 4456677899998742 2 567789999999999999999
Q ss_pred CcceEEeccccchh
Q 017199 177 RVKNWITINEPLQT 190 (375)
Q Consensus 177 ~V~~w~t~NEp~~~ 190 (375)
+|..|.++|||...
T Consensus 73 ~i~~wdV~NE~~~~ 86 (254)
T smart00633 73 KIYAWDVVNEALHD 86 (254)
T ss_pred cceEEEEeeecccC
Confidence 99999999999863
No 17
>COG1874 LacA Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=98.59 E-value=9.7e-08 Score=101.03 Aligned_cols=118 Identities=21% Similarity=0.396 Sum_probs=93.8
Q ss_pred cHHHHHHHHHcCCCeEEe-cccccccccCCCCCcCChhHHHHHHHH-HHHHHHcCCeeEEEe-ccCCCchhHHhhc----
Q 017199 79 YKEDIDLIAKLGFDAYRF-SISWSRIFPDGLGTKINMEGITFYNNI-IDALLQKGIQPYVTL-YHWDLPLHLHESM---- 151 (375)
Q Consensus 79 y~eDi~l~~~lG~~~~R~-si~W~ri~P~~~g~~~n~~~l~~y~~~-i~~l~~~gi~p~vtL-~H~~~P~~l~~~~---- 151 (375)
+.+|+++||++|+|++|. -++|++++|+. | ++|.. +.|.. ++.+.+.||.+|+.. .....|.|+..+|
T Consensus 32 w~ddl~~mk~~G~N~V~ig~faW~~~eP~e-G-~fdf~---~~D~~~l~~a~~~Gl~vil~t~P~g~~P~Wl~~~~PeiL 106 (673)
T COG1874 32 WMDDLRKMKALGLNTVRIGYFAWNLHEPEE-G-KFDFT---WLDEIFLERAYKAGLYVILRTGPTGAPPAWLAKKYPEIL 106 (673)
T ss_pred HHHHHHHHHHhCCCeeEeeeEEeeccCccc-c-ccCcc---cchHHHHHHHHhcCceEEEecCCCCCCchHHhcCChhhe
Confidence 567899999999999999 55999999998 9 99985 67777 999999999999998 7788999998864
Q ss_pred -----------CCCCCHHHH-HHHHHHHHH----HHHH-cCCC--cceEEeccccch-hhcccccccccC
Q 017199 152 -----------GGWLNKEIV-KYFEIYADT----CFAS-FGDR--VKNWITINEPLQ-TAVNGYCTGIFA 201 (375)
Q Consensus 152 -----------gg~~~~~~~-~~f~~ya~~----~~~~-~~d~--V~~w~t~NEp~~-~~~~gy~~g~~~ 201 (375)
|+|.+-+.. ..|.+|++. +.+| |++. |--|.+=||-.. .++..|+...|+
T Consensus 107 ~~~~~~~~~~~g~r~~~~~~~~~Yr~~~~~i~~~irer~~~~~~~v~~w~~dneY~~~~~~~~~~~~~f~ 176 (673)
T COG1874 107 AVDENGRVRSDGARENICPVSPVYREYLDRILQQIRERLYGNGPAVITWQNDNEYGGHPCYCDYCQAAFR 176 (673)
T ss_pred EecCCCcccCCCcccccccccHHHHHHHHHHHHHHHHHHhccCCceeEEEccCccCCccccccccHHHHH
Confidence 666553322 246666666 8888 8874 777999999887 566666555544
No 18
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=98.14 E-value=6.8e-05 Score=73.84 Aligned_cols=141 Identities=13% Similarity=0.167 Sum_probs=87.9
Q ss_pred HHHHHHHHHcCCCeEEecccccccccCCCCCcCChhHHHHHHHHHHHHHHcCCeeEEEeccCCCchhHH----hhcCCCC
Q 017199 80 KEDIDLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLPLHLH----ESMGGWL 155 (375)
Q Consensus 80 ~eDi~l~~~lG~~~~R~si~W~ri~P~~~g~~~n~~~l~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~----~~~gg~~ 155 (375)
++=+++||+.|+|++|+-+ | +.|...| .-| ++.-..+.++++++||+++|++|.=| .|.. .+-..|.
T Consensus 27 ~d~~~ilk~~G~N~vRlRv-w--v~P~~~g-~~~---~~~~~~~akrak~~Gm~vlldfHYSD--~WaDPg~Q~~P~aW~ 97 (332)
T PF07745_consen 27 KDLFQILKDHGVNAVRLRV-W--VNPYDGG-YND---LEDVIALAKRAKAAGMKVLLDFHYSD--FWADPGKQNKPAAWA 97 (332)
T ss_dssp --HHHHHHHTT--EEEEEE----SS-TTTT-TTS---HHHHHHHHHHHHHTT-EEEEEE-SSS--S--BTTB-B--TTCT
T ss_pred CCHHHHHHhcCCCeEEEEe-c--cCCcccc-cCC---HHHHHHHHHHHHHCCCeEEEeecccC--CCCCCCCCCCCccCC
Confidence 3447999999999999988 5 4454324 444 57888999999999999999997422 2321 1125688
Q ss_pred C---HHHHHHHHHHHHHHHHHcCC---CcceEEeccccchhhcccccccccCCCCCCCCCchHHHHHHHHHHHHHHHHHH
Q 017199 156 N---KEIVKYFEIYADTCFASFGD---RVKNWITINEPLQTAVNGYCTGIFAPGRHQHSSTEPYLVAHHQILAHAAAFSV 229 (375)
Q Consensus 156 ~---~~~~~~f~~ya~~~~~~~~d---~V~~w~t~NEp~~~~~~gy~~g~~~p~~~~~~~~~~~~~~h~~llAHa~Av~~ 229 (375)
+ .+..+.-.+|.+.+.+.+++ .++.+.+-||.+.-.. +|.|.. .-+.-+-.++.|-.+|
T Consensus 98 ~~~~~~l~~~v~~yT~~vl~~l~~~G~~pd~VQVGNEin~Gml-------wp~g~~-----~~~~~~a~ll~ag~~A--- 162 (332)
T PF07745_consen 98 NLSFDQLAKAVYDYTKDVLQALKAAGVTPDMVQVGNEINNGML-------WPDGKP-----SNWDNLAKLLNAGIKA--- 162 (332)
T ss_dssp SSSHHHHHHHHHHHHHHHHHHHHHTT--ESEEEESSSGGGEST-------BTTTCT-----T-HHHHHHHHHHHHHH---
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHCCCCccEEEeCcccccccc-------CcCCCc-----cCHHHHHHHHHHHHHH---
Confidence 7 66778888899888887765 5788999999885332 333331 2233344555555555
Q ss_pred HHHhhcCCCCceEEEEec
Q 017199 230 YQRKYKDKQGGNIGLVVD 247 (375)
Q Consensus 230 ~k~~~~~~~~~kVG~~~~ 247 (375)
+|+.. ++.+|.+.+.
T Consensus 163 Vr~~~---p~~kV~lH~~ 177 (332)
T PF07745_consen 163 VREVD---PNIKVMLHLA 177 (332)
T ss_dssp HHTHS---STSEEEEEES
T ss_pred HHhcC---CCCcEEEEEC
Confidence 45554 4788866654
No 19
>COG2730 BglC Endoglucanase [Carbohydrate transport and metabolism]
Probab=98.13 E-value=9.5e-06 Score=82.31 Aligned_cols=109 Identities=21% Similarity=0.202 Sum_probs=81.7
Q ss_pred HHHHHHHHHcCCCeEEecccccccccCC--CCCcCC-hhHHHHHHHHHHHHHHcCCeeEEEeccCCCchhHHhhc---CC
Q 017199 80 KEDIDLIAKLGFDAYRFSISWSRIFPDG--LGTKIN-MEGITFYNNIIDALLQKGIQPYVTLYHWDLPLHLHESM---GG 153 (375)
Q Consensus 80 ~eDi~l~~~lG~~~~R~si~W~ri~P~~--~g~~~n-~~~l~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~---gg 153 (375)
++|+..|++.|||++|+.|.|..+.+.. +. .+. ...+...+++|+.++++||.+++.||+..-+.--.+.. +.
T Consensus 76 ~~~~~~ik~~G~n~VRiPi~~~~~~~~~~~~p-~~~~~~~~~~ld~~I~~a~~~gi~V~iD~H~~~~~~~~~~~s~~~~~ 154 (407)
T COG2730 76 EEDFDQIKSAGFNAVRIPIGYWALQATDGDNP-YLIGLTQLKILDEAINWAKKLGIYVLIDLHGYPGGNNGHEHSGYTSD 154 (407)
T ss_pred hhHHHHHHHcCCcEEEcccchhhhhccCCCCC-CeecchHHHHHHHHHHHHHhcCeeEEEEecccCCCCCCcCccccccc
Confidence 8999999999999999999866655542 12 333 44566999999999999999999999866322222211 11
Q ss_pred CC-CHHHHHHHHHHHHHHHHHcCCC--cceEEeccccch
Q 017199 154 WL-NKEIVKYFEIYADTCFASFGDR--VKNWITINEPLQ 189 (375)
Q Consensus 154 ~~-~~~~~~~f~~ya~~~~~~~~d~--V~~w~t~NEp~~ 189 (375)
+. ...+++++.+-.+.++.||++. |--..++|||+.
T Consensus 155 ~~~~~~~~~~~~~~w~~ia~~f~~~~~VIg~~~~NEP~~ 193 (407)
T COG2730 155 YKEENENVEATIDIWKFIANRFKNYDTVIGFELINEPNG 193 (407)
T ss_pred ccccchhHHHHHHHHHHHHHhccCCCceeeeeeecCCcc
Confidence 22 3557799999999999999983 444789999995
No 20
>PF01229 Glyco_hydro_39: Glycosyl hydrolases family 39; InterPro: IPR000514 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 39 GH39 from CAZY comprises enzymes with several known activities; alpha-L-iduronidase (3.2.1.76 from EC); beta-xylosidase (3.2.1.37 from EC). The most highly conserved regions in these enzymes are located in their N-terminal sections. These contain a glutamic acid residue which, on the basis of similarities with other families of glycosyl hydrolases [], probably acts as the proton donor in their catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 2BS9_D 2BFG_E 1W91_B 1UHV_D 1PX8_A.
Probab=98.10 E-value=1.3e-05 Score=83.06 Aligned_cols=141 Identities=22% Similarity=0.310 Sum_probs=79.4
Q ss_pred cHHHHHHH-HHcCCCeEEec--c--ccccccc-CCCCC-cCChhHHHHHHHHHHHHHHcCCeeEEEeccCCCchhHHhh-
Q 017199 79 YKEDIDLI-AKLGFDAYRFS--I--SWSRIFP-DGLGT-KINMEGITFYNNIIDALLQKGIQPYVTLYHWDLPLHLHES- 150 (375)
Q Consensus 79 y~eDi~l~-~~lG~~~~R~s--i--~W~ri~P-~~~g~-~~n~~~l~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~- 150 (375)
+++.+..+ +++||+.+||- + +..-... ++.|. .+|+ ...|+++|.|+++||+|+|.|.. +|.++...
T Consensus 41 ~q~~l~~~~~~~gf~yvR~h~l~~ddm~~~~~~~~~~~~~Ynf---~~lD~i~D~l~~~g~~P~vel~f--~p~~~~~~~ 115 (486)
T PF01229_consen 41 WQEQLRELQEELGFRYVRFHGLFSDDMMVYSESDEDGIPPYNF---TYLDQILDFLLENGLKPFVELGF--MPMALASGY 115 (486)
T ss_dssp HHHHHHHHHCCS--SEEEES-TTSTTTT-EEEEETTEEEEE-----HHHHHHHHHHHHCT-EEEEEE-S--B-GGGBSS-
T ss_pred HHHHHHHHHhccCceEEEEEeeccCchhhccccccCCCCcCCh---HHHHHHHHHHHHcCCEEEEEEEe--chhhhcCCC
Confidence 44555555 59999999985 2 2222322 22231 2686 78899999999999999999974 67776432
Q ss_pred -----cCCCC-CHHHHHHHHHHHHHHHHHcCC-----Ccc--eEEeccccchhhcccccccccCCCCCCCCCchHHHHHH
Q 017199 151 -----MGGWL-NKEIVKYFEIYADTCFASFGD-----RVK--NWITINEPLQTAVNGYCTGIFAPGRHQHSSTEPYLVAH 217 (375)
Q Consensus 151 -----~gg~~-~~~~~~~f~~ya~~~~~~~~d-----~V~--~w~t~NEp~~~~~~gy~~g~~~p~~~~~~~~~~~~~~h 217 (375)
+.|+. .|+..+.|.++++.+++|+.+ .|. +|++||||++..+. ..+ ...+ | .
T Consensus 116 ~~~~~~~~~~~pp~~~~~W~~lv~~~~~h~~~RYG~~ev~~W~fEiWNEPd~~~f~-------~~~----~~~e-y---~ 180 (486)
T PF01229_consen 116 QTVFWYKGNISPPKDYEKWRDLVRAFARHYIDRYGIEEVSTWYFEIWNEPDLKDFW-------WDG----TPEE-Y---F 180 (486)
T ss_dssp -EETTTTEE-S-BS-HHHHHHHHHHHHHHHHHHHHHHHHTTSEEEESS-TTSTTTS-------GGG-----HHH-H---H
T ss_pred CccccccCCcCCcccHHHHHHHHHHHHHHHHhhcCCccccceeEEeCcCCCccccc-------CCC----CHHH-H---H
Confidence 12222 356678888888777766543 355 56899999974321 111 1111 1 2
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCceEEEE
Q 017199 218 HQILAHAAAFSVYQRKYKDKQGGNIGLV 245 (375)
Q Consensus 218 ~~llAHa~Av~~~k~~~~~~~~~kVG~~ 245 (375)
.+. ..+++.+|+..| ..+||-.
T Consensus 181 ~ly---~~~~~~iK~~~p---~~~vGGp 202 (486)
T PF01229_consen 181 ELY---DATARAIKAVDP---ELKVGGP 202 (486)
T ss_dssp HHH---HHHHHHHHHH-T---TSEEEEE
T ss_pred HHH---HHHHHHHHHhCC---CCcccCc
Confidence 222 345666777754 8899865
No 21
>PF00331 Glyco_hydro_10: Glycosyl hydrolase family 10; InterPro: IPR001000 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 10 GH10 from CAZY comprises enzymes with a number of known activities; xylanase (3.2.1.8 from EC); endo-1,3-beta-xylanase (3.2.1.32 from EC); cellobiohydrolase (3.2.1.91 from EC). These enzymes were formerly known as cellulase family F. The microbial degradation of cellulose and xylans requires several types of enzymes such as endoglucanases (3.2.1.4 from EC), cellobiohydrolases (3.2.1.91 from EC) (exoglucanases), or xylanases (3.2.1.8 from EC) [, ]. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family F [] or as the glycosyl hydrolases family 10 []. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1UQZ_A 1UQY_A 1UR2_A 1UR1_A 2CNC_A 1OD8_A 1E0W_A 1E0V_A 1V0M_A 1E0X_B ....
Probab=97.89 E-value=8e-05 Score=73.21 Aligned_cols=124 Identities=21% Similarity=0.319 Sum_probs=87.5
Q ss_pred CCCCCeehhhhccccccCccCCCCCCCceeeeccccCCccccCCCCCccCCcccCcHHHHHHHHHcCCCeEEe--ccccc
Q 017199 24 FPPNFVFGVATSAYQIEGACEEGNRGASIWDDFTHTEGKIIDKSNGDVAVDHYHRYKEDIDLIAKLGFDAYRF--SISWS 101 (375)
Q Consensus 24 fp~~FlwG~atsa~QvEG~~~~~g~~~s~wd~~~~~~~~~~~~~~~~~a~~~~~~y~eDi~l~~~lG~~~~R~--si~W~ 101 (375)
...+|.+|+|.++.++++.. ....+-.-.+|.+-. ...|.
T Consensus 6 ~~~~f~~G~av~~~~~~~~~--------------------------------------~~~~~~~~~Fn~~t~eN~~Kw~ 47 (320)
T PF00331_consen 6 AKHKFPFGAAVNAQQLEDDP--------------------------------------RYRELFAKHFNSVTPENEMKWG 47 (320)
T ss_dssp HCTTTEEEEEEBGGGHTHHH--------------------------------------HHHHHHHHH-SEEEESSTTSHH
T ss_pred HhccCCEEEEechhHcCCcH--------------------------------------HHHHHHHHhCCeeeeccccchh
Confidence 35678999999988887731 011122233444444 47899
Q ss_pred ccccCCCCCcCChhHHHHHHHHHHHHHHcCCeeEE--EeccCCCchhHHhhcCCCCCHH---HHHHHHHHHHHHHHHcC-
Q 017199 102 RIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYV--TLYHWDLPLHLHESMGGWLNKE---IVKYFEIYADTCFASFG- 175 (375)
Q Consensus 102 ri~P~~~g~~~n~~~l~~y~~~i~~l~~~gi~p~v--tL~H~~~P~~l~~~~gg~~~~~---~~~~f~~ya~~~~~~~~- 175 (375)
.++|.+ | .+|. +..|++++-++++||++-- .+.|--.|.|+... .-+...+ ......+|.+.+++||+
T Consensus 48 ~~e~~~-g-~~~~---~~~D~~~~~a~~~g~~vrGH~LvW~~~~P~w~~~~-~~~~~~~~~~~~~~l~~~I~~v~~~y~~ 121 (320)
T PF00331_consen 48 SIEPEP-G-RFNF---ESADAILDWARENGIKVRGHTLVWHSQTPDWVFNL-ANGSPDEKEELRARLENHIKTVVTRYKD 121 (320)
T ss_dssp HHESBT-T-BEE----HHHHHHHHHHHHTT-EEEEEEEEESSSS-HHHHTS-TTSSBHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred hhcCCC-C-ccCc---cchhHHHHHHHhcCcceeeeeEEEcccccceeeec-cCCCcccHHHHHHHHHHHHHHHHhHhcc
Confidence 999997 8 9997 5689999999999999873 34466789999863 1233333 78888999999999999
Q ss_pred -CCcceEEeccccchhh
Q 017199 176 -DRVKNWITINEPLQTA 191 (375)
Q Consensus 176 -d~V~~w~t~NEp~~~~ 191 (375)
.+|..|-++|||-...
T Consensus 122 ~g~i~~WDVvNE~i~~~ 138 (320)
T PF00331_consen 122 KGRIYAWDVVNEAIDDD 138 (320)
T ss_dssp TTTESEEEEEES-B-TT
T ss_pred ccceEEEEEeeecccCC
Confidence 4899999999997643
No 22
>PF01301 Glyco_hydro_35: Glycosyl hydrolases family 35; InterPro: IPR001944 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 35 GH35 from CAZY comprises enzymes with only one known activity; beta-galactosidase (3.2.1.23 from EC). Mammalian beta-galactosidase is a lysosomal enzyme (gene GLB1) which cleaves the terminal galactose from gangliosides, glycoproteins, and glycosaminoglycans and whose deficiency is the cause of the genetic disease Gm(1) gangliosidosis (Morquio disease type B).; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3OGS_A 3OGV_A 3OGR_A 3OG2_A 1TG7_A 1XC6_A 3THC_C 3THD_D 3D3A_A 4E8D_B ....
Probab=97.61 E-value=0.0003 Score=69.18 Aligned_cols=110 Identities=12% Similarity=0.141 Sum_probs=75.5
Q ss_pred cCcHHHHHHHHHcCCCeEEecccccccccCCCCCcCChhHHHHHHHHHHHHHHcCCeeEEEec--------cCCCchhHH
Q 017199 77 HRYKEDIDLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLY--------HWDLPLHLH 148 (375)
Q Consensus 77 ~~y~eDi~l~~~lG~~~~R~si~W~ri~P~~~g~~~n~~~l~~y~~~i~~l~~~gi~p~vtL~--------H~~~P~~l~ 148 (375)
..|++-++.||++|+|++-+-|.|.-.||.+ | ++|+++..=.+.+|+.++++||.+++-.- ...+|.||.
T Consensus 24 ~~W~~~l~k~ka~G~n~v~~yv~W~~he~~~-g-~~df~g~~dl~~f~~~a~~~gl~vilrpGpyi~aE~~~gG~P~Wl~ 101 (319)
T PF01301_consen 24 EYWRDRLQKMKAAGLNTVSTYVPWNLHEPEE-G-QFDFTGNRDLDRFLDLAQENGLYVILRPGPYICAEWDNGGLPAWLL 101 (319)
T ss_dssp GGHHHHHHHHHHTT-SEEEEE--HHHHSSBT-T-B---SGGG-HHHHHHHHHHTT-EEEEEEES---TTBGGGG--GGGG
T ss_pred hHHHHHHHHHHhCCcceEEEeccccccCCCC-C-cccccchhhHHHHHHHHHHcCcEEEecccceecccccchhhhhhhh
Confidence 3467789999999999999999999999998 9 99999988899999999999999887532 245899998
Q ss_pred hhcCCC---CCHHHHHHHHHHHHHHHHHcCC-------CcceEEeccccc
Q 017199 149 ESMGGW---LNKEIVKYFEIYADTCFASFGD-------RVKNWITINEPL 188 (375)
Q Consensus 149 ~~~gg~---~~~~~~~~f~~ya~~~~~~~~d-------~V~~w~t~NEp~ 188 (375)
.+.+.. .++...++-.+|.+.+++...+ -|-...+=||..
T Consensus 102 ~~~~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~GGpII~vQvENEyg 151 (319)
T PF01301_consen 102 RKPDIRLRTNDPPFLEAVERWYRALAKIIKPLQYTNGGPIIMVQVENEYG 151 (319)
T ss_dssp GSTTS-SSSS-HHHHHHHHHHHHHHHHHHGGGBGGGTSSEEEEEESSSGG
T ss_pred ccccccccccchhHHHHHHHHHHHHHHHHHhhhhcCCCceehhhhhhhhC
Confidence 763332 2355666666677776666654 244566777755
No 23
>PLN03059 beta-galactosidase; Provisional
Probab=97.05 E-value=0.0029 Score=68.85 Aligned_cols=114 Identities=16% Similarity=0.146 Sum_probs=88.8
Q ss_pred cCCcccC-----cHHHHHHHHHcCCCeEEecccccccccCCCCCcCChhHHHHHHHHHHHHHHcCCeeEEEec-------
Q 017199 72 AVDHYHR-----YKEDIDLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLY------- 139 (375)
Q Consensus 72 a~~~~~~-----y~eDi~l~~~lG~~~~R~si~W~ri~P~~~g~~~n~~~l~~y~~~i~~l~~~gi~p~vtL~------- 139 (375)
+.-||-| |++=|+.||++|+|++-.=|.|..-||.+ | ++|++|..=..++|+.+.+.||-+|+-.-
T Consensus 49 G~iHY~R~~p~~W~d~L~k~Ka~GlNtV~tYV~Wn~HEp~~-G-~~dF~G~~DL~~Fl~la~e~GLyvilRpGPYIcAEw 126 (840)
T PLN03059 49 GSIHYPRSTPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPSP-G-NYYFEDRYDLVKFIKVVQAAGLYVHLRIGPYICAEW 126 (840)
T ss_pred eCcccCcCCHHHHHHHHHHHHHcCCCeEEEEecccccCCCC-C-eeeccchHHHHHHHHHHHHcCCEEEecCCcceeeee
Confidence 3456644 56669999999999999999999999997 9 99999999999999999999999888642
Q ss_pred -cCCCchhHHhhcCCC----CCHHHHHHHHHHHHHHHHHcC---------CCcceEEeccccc
Q 017199 140 -HWDLPLHLHESMGGW----LNKEIVKYFEIYADTCFASFG---------DRVKNWITINEPL 188 (375)
Q Consensus 140 -H~~~P~~l~~~~gg~----~~~~~~~~f~~ya~~~~~~~~---------d~V~~w~t~NEp~ 188 (375)
...+|.||... .|- .++...++-.+|.+.++...+ +-|-...+=||-.
T Consensus 127 ~~GGlP~WL~~~-~~i~~Rs~d~~fl~~v~~~~~~l~~~l~~~~l~~~~GGPIImvQIENEYG 188 (840)
T PLN03059 127 NFGGFPVWLKYV-PGIEFRTDNGPFKAAMQKFTEKIVDMMKSEKLFEPQGGPIILSQIENEYG 188 (840)
T ss_pred cCCCCchhhhcC-CCcccccCCHHHHHHHHHHHHHHHHHHhhcceeecCCCcEEEEEeccccc
Confidence 46889999754 342 246666777777777777763 2345566778854
No 24
>PF01373 Glyco_hydro_14: Glycosyl hydrolase family 14; InterPro: IPR001554 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 14 GH14 from CAZY comprises enzymes with only one known activity; beta-amylase (3.2.1.2 from EC). A Glu residue has been proposed as a catalytic residue, but it is not known if it is the nucleophile or the proton donor. Beta-amylase [, ] is an enzyme that hydrolyses 1,4-alpha-glucosidic linkages in starch-type polysaccharide substrates so as to remove successive maltose units from the non-reducing ends of the chains. Beta-amylase is present in certain bacteria as well as in plants. Three highly conserved sequence regions are found in all known beta-amylases. The first of these regions is located in the N-terminal section of the enzymes and contains an aspartate which is known [] to be involved in the catalytic mechanism. The second, located in a more central location, is centred around a glutamate which is also involved [] in the catalytic mechanism. The 3D structure of a complex of soybean beta-amylase with an inhibitor (alpha-cyclodextrin) has been determined to 3.0A resolution by X-ray diffraction []. The enzyme folds into large and small domains: the large domain has a (beta alpha)8 super-secondary structural core, while the smaller is formed from two long loops extending from the beta-3 and beta-4 strands of the (beta alpha)8 fold []. The interface of the two domains, together with shorter loops from the (beta alpha)8 core, form a deep cleft, in which the inhibitor binds []. Two maltose molecules also bind in the cleft, one sharing a binding site with alpha-cyclodextrin, and the other sitting more deeply in the cleft [].; GO: 0016161 beta-amylase activity, 0000272 polysaccharide catabolic process; PDB: 1FA2_A 2DQX_A 1WDP_A 1UKP_C 1BYC_A 1BYA_A 1Q6C_A 1V3I_A 1BTC_A 1BYB_A ....
Probab=96.96 E-value=0.001 Score=66.57 Aligned_cols=99 Identities=15% Similarity=0.340 Sum_probs=75.2
Q ss_pred ccCcHHHHHHHHHcCCCeEEecccccccccCCCCCcCChhHHHHHHHHHHHHHHcCCeeEEEec-c-----------CCC
Q 017199 76 YHRYKEDIDLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLY-H-----------WDL 143 (375)
Q Consensus 76 ~~~y~eDi~l~~~lG~~~~R~si~W~ri~P~~~g~~~n~~~l~~y~~~i~~l~~~gi~p~vtL~-H-----------~~~ 143 (375)
+.-.+..++.+|++|+..+-+.+-|.-+|..+++ ++|+ +.|+++++.+++.|++..+.|. | ..+
T Consensus 15 ~~~~~~~L~~LK~~GV~GVmvdvWWGiVE~~~p~-~ydW---s~Y~~l~~~vr~~GLk~~~vmsfH~cGgNvgD~~~IpL 90 (402)
T PF01373_consen 15 WNALEAQLRALKSAGVDGVMVDVWWGIVEGEGPQ-QYDW---SGYRELFEMVRDAGLKLQVVMSFHQCGGNVGDDCNIPL 90 (402)
T ss_dssp CHHHHHHHHHHHHTTEEEEEEEEEHHHHTGSSTT-B------HHHHHHHHHHHHTT-EEEEEEE-S-BSSSTTSSSEB-S
T ss_pred HHHHHHHHHHHHHcCCcEEEEEeEeeeeccCCCC-ccCc---HHHHHHHHHHHHcCCeEEEEEeeecCCCCCCCccCCcC
Confidence 4467889999999999999999999999999768 9998 5699999999999999888663 3 468
Q ss_pred chhHHhh-----------cCC--------CCCHHHHHHHHHHHHHHHHHcCCCc
Q 017199 144 PLHLHES-----------MGG--------WLNKEIVKYFEIYADTCFASFGDRV 178 (375)
Q Consensus 144 P~~l~~~-----------~gg--------~~~~~~~~~f~~ya~~~~~~~~d~V 178 (375)
|.|+.++ .|. |....+++.|.+|-+...++|.+..
T Consensus 91 P~Wv~~~~~~~di~ytd~~G~rn~E~lSp~~~grt~~~Y~dfm~sF~~~f~~~~ 144 (402)
T PF01373_consen 91 PSWVWEIGKKDDIFYTDRSGNRNKEYLSPVLDGRTLQCYSDFMRSFRDNFSDYL 144 (402)
T ss_dssp -HHHHHHHHHSGGEEE-TTS-EEEEEE-CTBTTBCHHHHHHHHHHHHHHCHHHH
T ss_pred CHHHHhccccCCcEEECCCCCcCcceeecccCCchHHHHHHHHHHHHHHHHHHH
Confidence 9998753 122 3333348999999999999987654
No 25
>PLN02803 beta-amylase
Probab=96.94 E-value=0.0023 Score=65.79 Aligned_cols=100 Identities=17% Similarity=0.286 Sum_probs=77.5
Q ss_pred cccCcHHHHHHHHHcCCCeEEecccccccccCCCCCcCChhHHHHHHHHHHHHHHcCCeeEEEec-c-----------CC
Q 017199 75 HYHRYKEDIDLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLY-H-----------WD 142 (375)
Q Consensus 75 ~~~~y~eDi~l~~~lG~~~~R~si~W~ri~P~~~g~~~n~~~l~~y~~~i~~l~~~gi~p~vtL~-H-----------~~ 142 (375)
+-.-.+..++.+|++|+..+-+.+=|--+|.++++ ++|+ ..|+++++.+++.|++..+.|. | ..
T Consensus 105 ~~~~l~~~L~~LK~~GVdGVmvDVWWGiVE~~~p~-~YdW---sgY~~l~~mvr~~GLKlq~vmSFHqCGGNVGD~~~Ip 180 (548)
T PLN02803 105 KPRAMNASLMALRSAGVEGVMVDAWWGLVEKDGPM-KYNW---EGYAELVQMVQKHGLKLQVVMSFHQCGGNVGDSCSIP 180 (548)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEeeeeeeccCCCC-cCCc---HHHHHHHHHHHHcCCeEEEEEEecccCCCCCCccccc
Confidence 33446778999999999999999999999998778 9998 5599999999999999877765 3 25
Q ss_pred CchhHHhh--------c---CCC----------------CCHHHHHHHHHHHHHHHHHcCCCc
Q 017199 143 LPLHLHES--------M---GGW----------------LNKEIVKYFEIYADTCFASFGDRV 178 (375)
Q Consensus 143 ~P~~l~~~--------~---gg~----------------~~~~~~~~f~~ya~~~~~~~~d~V 178 (375)
+|.|+.+. | .|. ..+.-++.|.+|-+.....|.+..
T Consensus 181 LP~WV~e~~~~~pDi~ftDr~G~rn~EyLSlg~D~~pvl~GRTplq~Y~Dfm~SFr~~F~~~l 243 (548)
T PLN02803 181 LPPWVLEEMSKNPDLVYTDRSGRRNPEYISLGCDSLPVLRGRTPIQVYSDYMRSFRERFKDYL 243 (548)
T ss_pred CCHHHHHhhhcCCCceEecCCCCcccceeccccccchhccCCCHHHHHHHHHHHHHHHHHHHh
Confidence 99998762 1 121 223345778888888777776644
No 26
>PF13204 DUF4038: Protein of unknown function (DUF4038); PDB: 3KZS_D.
Probab=96.89 E-value=0.005 Score=59.70 Aligned_cols=103 Identities=20% Similarity=0.319 Sum_probs=63.1
Q ss_pred HHHHHHHHHcCCCeEEecc--ccccc--------cc--CCC-C----CcCChhHHHHHHHHHHHHHHcCCeeEEEeccCC
Q 017199 80 KEDIDLIAKLGFDAYRFSI--SWSRI--------FP--DGL-G----TKINMEGITFYNNIIDALLQKGIQPYVTLYHWD 142 (375)
Q Consensus 80 ~eDi~l~~~lG~~~~R~si--~W~ri--------~P--~~~-g----~~~n~~~l~~y~~~i~~l~~~gi~p~vtL~H~~ 142 (375)
+.-++..++-|||.+|+.+ .|... .| ..+ + +.+|++-+++.+++|+.|.++||++.+.+.| +
T Consensus 33 ~~yL~~r~~qgFN~iq~~~l~~~~~~~~~n~~~~~~~~~~~~~~~d~~~~N~~YF~~~d~~i~~a~~~Gi~~~lv~~w-g 111 (289)
T PF13204_consen 33 EQYLDTRKEQGFNVIQMNVLPQWDGYNTPNRYGFAPFPDEDPGQFDFTRPNPAYFDHLDRRIEKANELGIEAALVPFW-G 111 (289)
T ss_dssp HHHHHHHHHTT--EEEEES-SSSS-B----TTS-BS-SSTT------TT----HHHHHHHHHHHHHHTT-EEEEESS--H
T ss_pred HHHHHHHHHCCCCEEEEEeCCCcccccccccCCCcCCCCCCccccCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEEEE-C
Confidence 3447888999999999998 45443 11 110 1 1389999999999999999999999887765 2
Q ss_pred CchhHHhhcCCCCC---HHHHHHHHHHHHHHHHHcCCC-cceEEecccc
Q 017199 143 LPLHLHESMGGWLN---KEIVKYFEIYADTCFASFGDR-VKNWITINEP 187 (375)
Q Consensus 143 ~P~~l~~~~gg~~~---~~~~~~f~~ya~~~~~~~~d~-V~~w~t~NEp 187 (375)
.|. .+ +.|.. .-..+.-.+|.+.|++||+.. -..|++-||-
T Consensus 112 ~~~---~~-~~Wg~~~~~m~~e~~~~Y~~yv~~Ry~~~~NviW~l~gd~ 156 (289)
T PF13204_consen 112 CPY---VP-GTWGFGPNIMPPENAERYGRYVVARYGAYPNVIWILGGDY 156 (289)
T ss_dssp HHH---H--------TTSS-HHHHHHHHHHHHHHHTT-SSEEEEEESSS
T ss_pred Ccc---cc-ccccccccCCCHHHHHHHHHHHHHHHhcCCCCEEEecCcc
Confidence 121 11 44432 223566778889999999998 5779999986
No 27
>PLN00197 beta-amylase; Provisional
Probab=96.80 E-value=0.0048 Score=63.74 Aligned_cols=108 Identities=17% Similarity=0.254 Sum_probs=81.2
Q ss_pred cccCcHHHHHHHHHcCCCeEEecccccccccCCCCCcCChhHHHHHHHHHHHHHHcCCeeEEEec-c-----------CC
Q 017199 75 HYHRYKEDIDLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLY-H-----------WD 142 (375)
Q Consensus 75 ~~~~y~eDi~l~~~lG~~~~R~si~W~ri~P~~~g~~~n~~~l~~y~~~i~~l~~~gi~p~vtL~-H-----------~~ 142 (375)
+-.-.+..++.+|++|+..+-+.+=|--+|+++++ ++|+ .-|+++++.+++.|++..+.|. | ..
T Consensus 125 ~~~~l~~~L~~LK~~GVdGVmvDvWWGiVE~~~p~-~YdW---sgY~~L~~mvr~~GLKlq~VmSFHqCGGNVGD~~~Ip 200 (573)
T PLN00197 125 RRKAMKASLQALKSAGVEGIMMDVWWGLVERESPG-VYNW---GGYNELLEMAKRHGLKVQAVMSFHQCGGNVGDSCTIP 200 (573)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeeeeeeeccCCCC-cCCc---HHHHHHHHHHHHcCCeEEEEEEecccCCCCCCccccc
Confidence 33457888999999999999999999999998778 9998 5599999999999999887765 3 25
Q ss_pred CchhHHhh--------c---CCC----------------CCHHHHHHHHHHHHHHHHHcCCCcceEEeccccc
Q 017199 143 LPLHLHES--------M---GGW----------------LNKEIVKYFEIYADTCFASFGDRVKNWITINEPL 188 (375)
Q Consensus 143 ~P~~l~~~--------~---gg~----------------~~~~~~~~f~~ya~~~~~~~~d~V~~w~t~NEp~ 188 (375)
+|.|+.+. | .|. ..|.-++.|.+|-+....+|.+... -|+.|..
T Consensus 201 LP~WV~~~g~~dpDifftDr~G~rn~EyLSlg~D~~pvl~GRTpiq~Y~DFM~SFr~~F~~~l~--~~I~eI~ 271 (573)
T PLN00197 201 LPKWVVEEVDKDPDLAYTDQWGRRNYEYVSLGCDTLPVLKGRTPVQCYADFMRAFRDNFKHLLG--DTIVEIQ 271 (573)
T ss_pred CCHHHHHhhccCCCceeecCCCCcccceeccccccccccCCCCHHHHHHHHHHHHHHHHHHHhc--CceeEEE
Confidence 99998762 1 121 1222367888888887777776543 2444443
No 28
>PLN02161 beta-amylase
Probab=96.69 E-value=0.0069 Score=62.08 Aligned_cols=111 Identities=15% Similarity=0.266 Sum_probs=83.8
Q ss_pred CCcccCcHHHHHHHHHcCCCeEEecccccccccCCCCCcCChhHHHHHHHHHHHHHHcCCeeEEEec-cC----------
Q 017199 73 VDHYHRYKEDIDLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLY-HW---------- 141 (375)
Q Consensus 73 ~~~~~~y~eDi~l~~~lG~~~~R~si~W~ri~P~~~g~~~n~~~l~~y~~~i~~l~~~gi~p~vtL~-H~---------- 141 (375)
..+..-.+..++.+|.+|+..+-+.+=|--+|+++++ ++|+ ..|+++++.+++.|++..+.|. |-
T Consensus 113 v~~~~al~~~L~~LK~~GVdGVmvDVWWGiVE~~~p~-~YdW---sgY~~l~~mvr~~GLKlq~vmSFHqCGGNvGd~~~ 188 (531)
T PLN02161 113 IKRLKALTVSLKALKLAGVHGIAVEVWWGIVERFSPL-EFKW---SLYEELFRLISEAGLKLHVALCFHSNMHLFGGKGG 188 (531)
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEEEeeeeeeecCCCC-cCCc---HHHHHHHHHHHHcCCeEEEEEEecccCCCCCCccC
Confidence 4566667889999999999999999999999998778 9998 5599999999999999877765 32
Q ss_pred -CCchhHHhh--------c---CC----------------CCCHHHHHHHHHHHHHHHHHcCCCcceEEeccccch
Q 017199 142 -DLPLHLHES--------M---GG----------------WLNKEIVKYFEIYADTCFASFGDRVKNWITINEPLQ 189 (375)
Q Consensus 142 -~~P~~l~~~--------~---gg----------------~~~~~~~~~f~~ya~~~~~~~~d~V~~w~t~NEp~~ 189 (375)
.+|.|+.+. | .| +..+.-++.|.+|-+....+|.+... -|+.|..+
T Consensus 189 IpLP~WV~~~g~~~pDi~ftDr~G~rn~EyLSlg~D~~pvl~GRTplq~Y~Dfm~SFr~~F~~~~~--~~I~eI~V 262 (531)
T PLN02161 189 ISLPLWIREIGDVNKDIYYRDKNGFSNNDYLTLGVDQLPLFGGRTAVQCYEDFMLSFSTKFEPYIG--NVIEEISI 262 (531)
T ss_pred ccCCHHHHhhhccCCCceEEcCCCCcccceeeeecccchhcCCCCHHHHHHHHHHHHHHHHHHHhc--CceEEEEe
Confidence 499998752 0 12 12233457888888888888776543 24444443
No 29
>PF14587 Glyco_hydr_30_2: O-Glycosyl hydrolase family 30; PDB: 3CLW_B.
Probab=96.65 E-value=0.0044 Score=61.89 Aligned_cols=99 Identities=19% Similarity=0.308 Sum_probs=54.1
Q ss_pred HcCCCeEEecc---c------------ccccc--cCCCCCcCChhHHHHHHHHHHHHHHcCCeeEEEeccCCCchhHHhh
Q 017199 88 KLGFDAYRFSI---S------------WSRIF--PDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLPLHLHES 150 (375)
Q Consensus 88 ~lG~~~~R~si---~------------W~ri~--P~~~g~~~n~~~l~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~ 150 (375)
.+|++.+|+.| + |.|.+ +..+| .+|+.+=+-=+.++++++++|+..++.. -+..|.|+. +
T Consensus 58 GlGLSI~RyNIGgGs~~~~d~~~i~~~~rr~e~f~~~dg-~yDW~~D~gQrwfL~~Ak~rGV~~f~aF-SNSPP~~MT-~ 134 (384)
T PF14587_consen 58 GLGLSIWRYNIGGGSAEQGDSSGIRDPWRRAESFLPADG-SYDWDADAGQRWFLKAAKERGVNIFEAF-SNSPPWWMT-K 134 (384)
T ss_dssp S---S-EEEE---STTTTTTSS--SSSTT----SB-TTS--B-TTSSHHHHHHHHHHHHTT---EEEE--SSS-GGGS-S
T ss_pred CceeeeeeeccccCCcccccCccCCCcccCCccccCCCC-CcCCCCCHHHHHHHHHHHHcCCCeEEEe-ecCCCHHHh-c
Confidence 48999999887 3 33332 22246 7887543445568999999999988844 455555554 3
Q ss_pred cC----C-----CCCHHHHHHHHHHHHHHHHHcCC---CcceEEeccccch
Q 017199 151 MG----G-----WLNKEIVKYFEIYADTCFASFGD---RVKNWITINEPLQ 189 (375)
Q Consensus 151 ~g----g-----~~~~~~~~~f~~ya~~~~~~~~d---~V~~w~t~NEp~~ 189 (375)
.| + =..++..+.|++|-..|+++|.. .+.+-.++|||+.
T Consensus 135 NG~~~g~~~~~~NLk~d~y~~FA~YLa~Vv~~~~~~GI~f~~IsP~NEP~~ 185 (384)
T PF14587_consen 135 NGSASGGDDGSDNLKPDNYDAFADYLADVVKHYKKWGINFDYISPFNEPQW 185 (384)
T ss_dssp SSSSB-S-SSS-SS-TT-HHHHHHHHHHHHHHHHCTT--EEEEE--S-TTS
T ss_pred CCCCCCCCccccccChhHHHHHHHHHHHHHHHHHhcCCccceeCCcCCCCC
Confidence 12 1 13467899999999999999943 5888999999994
No 30
>COG3693 XynA Beta-1,4-xylanase [Carbohydrate transport and metabolism]
Probab=96.60 E-value=0.0062 Score=59.20 Aligned_cols=97 Identities=19% Similarity=0.299 Sum_probs=76.6
Q ss_pred HHHcCCCeEEecccccccccCCCCCcCChhHHHHHHHHHHHHHHcCCeeEE-E-eccCCCchhHHhhcCCCCCHHHHHHH
Q 017199 86 IAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYV-T-LYHWDLPLHLHESMGGWLNKEIVKYF 163 (375)
Q Consensus 86 ~~~lG~~~~R~si~W~ri~P~~~g~~~n~~~l~~y~~~i~~l~~~gi~p~v-t-L~H~~~P~~l~~~~gg~~~~~~~~~f 163 (375)
.++.++=+-==-.-|.-|+|+. | .+|+++ =|.+.+-++++||..-- | +.|--.|.|+.. .-+..+...+..
T Consensus 55 ~re~n~iTpenemKwe~i~p~~-G-~f~Fe~---AD~ia~FAr~h~m~lhGHtLvW~~q~P~W~~~--~e~~~~~~~~~~ 127 (345)
T COG3693 55 ARECNQITPENEMKWEAIEPER-G-RFNFEA---ADAIANFARKHNMPLHGHTLVWHSQVPDWLFG--DELSKEALAKMV 127 (345)
T ss_pred HhhhcccccccccccccccCCC-C-ccCccc---hHHHHHHHHHcCCeeccceeeecccCCchhhc--cccChHHHHHHH
Confidence 3455554444556799999986 8 999854 68899999999997543 2 335577999864 236778899999
Q ss_pred HHHHHHHHHHcCCCcceEEeccccch
Q 017199 164 EIYADTCFASFGDRVKNWITINEPLQ 189 (375)
Q Consensus 164 ~~ya~~~~~~~~d~V~~w~t~NEp~~ 189 (375)
.++...|++||++.|..|-+.|||.-
T Consensus 128 e~hI~tV~~rYkg~~~sWDVVNE~vd 153 (345)
T COG3693 128 EEHIKTVVGRYKGSVASWDVVNEAVD 153 (345)
T ss_pred HHHHHHHHHhccCceeEEEecccccC
Confidence 99999999999999999999999976
No 31
>PLN02801 beta-amylase
Probab=96.59 E-value=0.011 Score=60.61 Aligned_cols=102 Identities=12% Similarity=0.317 Sum_probs=79.2
Q ss_pred CCcccCcHHHHHHHHHcCCCeEEecccccccccCCCCCcCChhHHHHHHHHHHHHHHcCCeeEEEec-c-----------
Q 017199 73 VDHYHRYKEDIDLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLY-H----------- 140 (375)
Q Consensus 73 ~~~~~~y~eDi~l~~~lG~~~~R~si~W~ri~P~~~g~~~n~~~l~~y~~~i~~l~~~gi~p~vtL~-H----------- 140 (375)
..+-.-.+..++.+|++|+..+-+.+=|--+|.++++ ++|+ +-|+++++.+++.|++..+.|. |
T Consensus 33 l~~~~~l~~~L~~LK~~GVdGVmvDVWWGiVE~~~P~-~YdW---sgY~~l~~mvr~~GLKlq~vmSFHqCGGNVGD~~~ 108 (517)
T PLN02801 33 LEDEEGLEKQLKRLKEAGVDGVMVDVWWGIVESKGPK-QYDW---SAYRSLFELVQSFGLKIQAIMSFHQCGGNVGDAVN 108 (517)
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEEeeeeeeeccCCCC-ccCc---HHHHHHHHHHHHcCCeEEEEEEecccCCCCCCccc
Confidence 3444457888999999999999999999999998778 9998 5599999999999999877665 2
Q ss_pred CCCchhHHhh--------c---CC----------------CCCHHHHHHHHHHHHHHHHHcCCCc
Q 017199 141 WDLPLHLHES--------M---GG----------------WLNKEIVKYFEIYADTCFASFGDRV 178 (375)
Q Consensus 141 ~~~P~~l~~~--------~---gg----------------~~~~~~~~~f~~ya~~~~~~~~d~V 178 (375)
..+|.|+.+. | .| +..+.-++.|.+|-+....+|.+..
T Consensus 109 IpLP~WV~~~g~~~pDi~ftDr~G~rn~EyLSlg~D~~pvl~GRTplq~Y~Dfm~SFr~~F~~~l 173 (517)
T PLN02801 109 IPIPQWVRDVGDSDPDIFYTNRSGNRNKEYLSIGVDNLPLFHGRTAVEMYSDYMKSFRENMADFL 173 (517)
T ss_pred ccCCHHHHHhhccCCCceeecCCCCcCcceeeeccCcccccCCCCHHHHHHHHHHHHHHHHHHhc
Confidence 3599998752 0 12 1223346888888888888877644
No 32
>PLN02705 beta-amylase
Probab=96.34 E-value=0.018 Score=60.11 Aligned_cols=100 Identities=13% Similarity=0.171 Sum_probs=77.0
Q ss_pred CcccCcHHHHHHHHHcCCCeEEecccccccccCCCCCcCChhHHHHHHHHHHHHHHcCCeeEEEec-c-----------C
Q 017199 74 DHYHRYKEDIDLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLY-H-----------W 141 (375)
Q Consensus 74 ~~~~~y~eDi~l~~~lG~~~~R~si~W~ri~P~~~g~~~n~~~l~~y~~~i~~l~~~gi~p~vtL~-H-----------~ 141 (375)
.+-.-.+..++.+|++|+..+-+.+=|--+|.++++ ++|| ..|+++++.+++.|++..+.|. | .
T Consensus 265 ~~~~al~a~L~aLK~aGVdGVmvDVWWGiVE~~~P~-~YdW---sgY~~L~~mvr~~GLKlqvVmSFHqCGGNVGD~~~I 340 (681)
T PLN02705 265 VDPEGVRQELSHMKSLNVDGVVVDCWWGIVEGWNPQ-KYVW---SGYRELFNIIREFKLKLQVVMAFHEYGGNASGNVMI 340 (681)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEEeeeeeEeecCCCC-cCCc---HHHHHHHHHHHHcCCeEEEEEEeeccCCCCCCcccc
Confidence 344557788999999999999999999999998778 9998 5599999999999999777765 3 2
Q ss_pred CCchhHHhh--------c---CCC----------------CCHHHHHHHHHHHHHHHHHcCCC
Q 017199 142 DLPLHLHES--------M---GGW----------------LNKEIVKYFEIYADTCFASFGDR 177 (375)
Q Consensus 142 ~~P~~l~~~--------~---gg~----------------~~~~~~~~f~~ya~~~~~~~~d~ 177 (375)
.+|.|+.+. | .|. ..+.-++.|.+|.+.....|.+.
T Consensus 341 PLP~WV~e~g~~nPDifftDr~G~rn~EyLSlg~D~~pvl~GRTplq~Y~DFM~SFr~~F~~f 403 (681)
T PLN02705 341 SLPQWVLEIGKDNQDIFFTDREGRRNTECLSWSIDKERVLKGRTGIEVYFDFMRSFRSEFDDL 403 (681)
T ss_pred cCCHHHHHhcccCCCceeecCCCCcccceeeeecCcccccCCCCHHHHHHHHHHHHHHHHHHh
Confidence 599998752 0 121 12334577888887777777653
No 33
>PLN02905 beta-amylase
Probab=96.14 E-value=0.025 Score=59.30 Aligned_cols=101 Identities=12% Similarity=0.224 Sum_probs=78.1
Q ss_pred CCcccCcHHHHHHHHHcCCCeEEecccccccccCCCCCcCChhHHHHHHHHHHHHHHcCCeeEEEec-c-----------
Q 017199 73 VDHYHRYKEDIDLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLY-H----------- 140 (375)
Q Consensus 73 ~~~~~~y~eDi~l~~~lG~~~~R~si~W~ri~P~~~g~~~n~~~l~~y~~~i~~l~~~gi~p~vtL~-H----------- 140 (375)
..+..-.+..+..+|.+|+..+-+.+=|--+|+++++ ++|| ..|+++++.+++.|++..+.|. |
T Consensus 282 l~~~~al~a~L~aLK~aGVdGVmvDVWWGiVE~~gP~-~YdW---sgY~~L~~mvr~~GLKlqvVMSFHqCGGNVGD~~~ 357 (702)
T PLN02905 282 LADPDGLLKQLRILKSINVDGVKVDCWWGIVEAHAPQ-EYNW---NGYKRLFQMVRELKLKLQVVMSFHECGGNVGDDVC 357 (702)
T ss_pred ccCHHHHHHHHHHHHHcCCCEEEEeeeeeeeecCCCC-cCCc---HHHHHHHHHHHHcCCeEEEEEEecccCCCCCCccc
Confidence 3455667889999999999999999999999998778 9998 5599999999999999877765 3
Q ss_pred CCCchhHHhh--------c---CCC----------------CCHHHHHHHHHHHHHHHHHcCCC
Q 017199 141 WDLPLHLHES--------M---GGW----------------LNKEIVKYFEIYADTCFASFGDR 177 (375)
Q Consensus 141 ~~~P~~l~~~--------~---gg~----------------~~~~~~~~f~~ya~~~~~~~~d~ 177 (375)
..+|.|+.+. | .|. ..+.-++.|.+|-+.....|.+.
T Consensus 358 IPLP~WV~e~g~~nPDifftDrsG~rn~EyLSlg~D~~pvl~GRTplq~Y~DFM~SFr~~F~~f 421 (702)
T PLN02905 358 IPLPHWVAEIGRSNPDIFFTDREGRRNPECLSWGIDKERILRGRTALEVYFDYMRSFRVEFDEF 421 (702)
T ss_pred ccCCHHHHHhhhcCCCceEecCCCCccCceeeeecccccccCCCCHHHHHHHHHHHHHHHHHHH
Confidence 2699998762 1 121 12334577887777777776553
No 34
>PF02836 Glyco_hydro_2_C: Glycosyl hydrolases family 2, TIM barrel domain; InterPro: IPR006103 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities; beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. Beta-galactosidase from E. coli has a TIM-barrel-like core surrounded by four other largely beta domains [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3CMG_A 3FN9_C 1YQ2_A 3K4D_B 3LPG_B 3LPF_A 3K4A_B 3K46_B 3GM8_A 3DEC_A ....
Probab=95.90 E-value=0.048 Score=52.77 Aligned_cols=93 Identities=17% Similarity=0.149 Sum_probs=61.1
Q ss_pred cccCcHHHHHHHHHcCCCeEEecccccccccCCCCCcCChhHHHHHHHHHHHHHHcCCeeEEEeccCCCchhHHhhcC--
Q 017199 75 HYHRYKEDIDLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLPLHLHESMG-- 152 (375)
Q Consensus 75 ~~~~y~eDi~l~~~lG~~~~R~si~W~ri~P~~~g~~~n~~~l~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~g-- 152 (375)
....++.|+.+||++|+|++|++-- | .+ .++++.|-+.||-++.-+.....-.|-. .+
T Consensus 34 ~~~~~~~d~~l~k~~G~N~iR~~h~-----p------~~-------~~~~~~cD~~GilV~~e~~~~~~~~~~~--~~~~ 93 (298)
T PF02836_consen 34 PDEAMERDLELMKEMGFNAIRTHHY-----P------PS-------PRFYDLCDELGILVWQEIPLEGHGSWQD--FGNC 93 (298)
T ss_dssp -HHHHHHHHHHHHHTT-SEEEETTS-------------S-------HHHHHHHHHHT-EEEEE-S-BSCTSSSS--TSCT
T ss_pred CHHHHHHHHHHHHhcCcceEEcccc-----c------Cc-------HHHHHHHhhcCCEEEEeccccccCcccc--CCcc
Confidence 3567899999999999999999531 1 12 3456677889999888664311111110 01
Q ss_pred --CCCCHHHHHHHHHHHHHHHHHcCCC--cceEEecccc
Q 017199 153 --GWLNKEIVKYFEIYADTCFASFGDR--VKNWITINEP 187 (375)
Q Consensus 153 --g~~~~~~~~~f~~ya~~~~~~~~d~--V~~w~t~NEp 187 (375)
--.+++..+.+.+-++.+++++.+. |-.|.+.||+
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~v~~~~NHPSIi~W~~gNE~ 132 (298)
T PF02836_consen 94 NYDADDPEFRENAEQELREMVRRDRNHPSIIMWSLGNES 132 (298)
T ss_dssp SCTTTSGGHHHHHHHHHHHHHHHHTT-TTEEEEEEEESS
T ss_pred ccCCCCHHHHHHHHHHHHHHHHcCcCcCchheeecCccC
Confidence 0135778888888889999999885 7889999998
No 35
>COG3867 Arabinogalactan endo-1,4-beta-galactosidase [Carbohydrate transport and metabolism]
Probab=95.76 E-value=0.45 Score=46.07 Aligned_cols=143 Identities=14% Similarity=0.243 Sum_probs=82.2
Q ss_pred HHH-HHHHHHcCCCeEEecccccccccCC-CCC----cCChhHHHHHHHHHHHHHHcCCeeEEEec---cCCCchhHHhh
Q 017199 80 KED-IDLIAKLGFDAYRFSISWSRIFPDG-LGT----KINMEGITFYNNIIDALLQKGIQPYVTLY---HWDLPLHLHES 150 (375)
Q Consensus 80 ~eD-i~l~~~lG~~~~R~si~W~ri~P~~-~g~----~~n~~~l~~y~~~i~~l~~~gi~p~vtL~---H~~~P~~l~~~ 150 (375)
++| ++.+|..|+|.+|+-| |. -|.. +|. --| .++.--++-++++..||++++..| ||.=|.- +.+
T Consensus 65 ~qD~~~iLK~~GvNyvRlRv-wn--dP~dsngn~yggGnn--D~~k~ieiakRAk~~GmKVl~dFHYSDfwaDPak-Q~k 138 (403)
T COG3867 65 RQDALQILKNHGVNYVRLRV-WN--DPYDSNGNGYGGGNN--DLKKAIEIAKRAKNLGMKVLLDFHYSDFWADPAK-QKK 138 (403)
T ss_pred HHHHHHHHHHcCcCeEEEEE-ec--CCccCCCCccCCCcc--hHHHHHHHHHHHHhcCcEEEeeccchhhccChhh-cCC
Confidence 344 7999999999999976 21 1211 110 223 356677888899999999999987 3444532 122
Q ss_pred cCCCCC---HHHHHHHHHHHHHHHHHcCC---CcceEEeccccchhhcccccccccCCCCCCCCCchHHHHHHHHHHHHH
Q 017199 151 MGGWLN---KEIVKYFEIYADTCFASFGD---RVKNWITINEPLQTAVNGYCTGIFAPGRHQHSSTEPYLVAHHQILAHA 224 (375)
Q Consensus 151 ~gg~~~---~~~~~~f~~ya~~~~~~~~d---~V~~w~t~NEp~~~~~~gy~~g~~~p~~~~~~~~~~~~~~h~~llAHa 224 (375)
-..|.+ .+.-.+--+|.+.+.+.+.+ ......+=||-+-. + .||-|... -+.-+-.++-+
T Consensus 139 PkaW~~l~fe~lk~avy~yTk~~l~~m~~eGi~pdmVQVGNEtn~g----f---lwp~Ge~~-----~f~k~a~L~n~-- 204 (403)
T COG3867 139 PKAWENLNFEQLKKAVYSYTKYVLTTMKKEGILPDMVQVGNETNGG----F---LWPDGEGR-----NFDKMAALLNA-- 204 (403)
T ss_pred cHHhhhcCHHHHHHHHHHHHHHHHHHHHHcCCCccceEeccccCCc----e---eccCCCCc-----ChHHHHHHHHH--
Confidence 245654 23334444566666665554 46667789997632 2 24545432 12223334443
Q ss_pred HHHHHHHHhhcCCCCceEEEEe
Q 017199 225 AAFSVYQRKYKDKQGGNIGLVV 246 (375)
Q Consensus 225 ~Av~~~k~~~~~~~~~kVG~~~ 246 (375)
+++.+|+..| +-+|-+.+
T Consensus 205 -g~~avrev~p---~ikv~lHl 222 (403)
T COG3867 205 -GIRAVREVSP---TIKVALHL 222 (403)
T ss_pred -HhhhhhhcCC---CceEEEEe
Confidence 4555666543 66665444
No 36
>PRK10150 beta-D-glucuronidase; Provisional
Probab=95.35 E-value=0.074 Score=56.78 Aligned_cols=94 Identities=20% Similarity=0.206 Sum_probs=64.2
Q ss_pred cCcHHHHHHHHHcCCCeEEecccccccccCCCCCcCChhHHHHHHHHHHHHHHcCCeeEEEeccCCCchhHHhh------
Q 017199 77 HRYKEDIDLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLPLHLHES------ 150 (375)
Q Consensus 77 ~~y~eDi~l~~~lG~~~~R~si~W~ri~P~~~g~~~n~~~l~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~------ 150 (375)
..+..|+++||++|+|++|+|- .|. + ..+++.|=+.||-++.-+.-+....|+...
T Consensus 313 ~~~~~d~~l~K~~G~N~vR~sh-----~p~------~-------~~~~~~cD~~GllV~~E~p~~~~~~~~~~~~~~~~~ 374 (604)
T PRK10150 313 VLNVHDHNLMKWIGANSFRTSH-----YPY------S-------EEMLDLADRHGIVVIDETPAVGLNLSFGAGLEAGNK 374 (604)
T ss_pred HHHHHHHHHHHHCCCCEEEecc-----CCC------C-------HHHHHHHHhcCcEEEEeccccccccccccccccccc
Confidence 3467899999999999999952 222 2 345677888999887755322222222100
Q ss_pred -cCCCC----CHHHHHHHHHHHHHHHHHcCCC--cceEEeccccc
Q 017199 151 -MGGWL----NKEIVKYFEIYADTCFASFGDR--VKNWITINEPL 188 (375)
Q Consensus 151 -~gg~~----~~~~~~~f~~ya~~~~~~~~d~--V~~w~t~NEp~ 188 (375)
...|. +++..+.+.+-++.+++|++++ |-.|.+.||+.
T Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~mv~r~~NHPSIi~Ws~gNE~~ 419 (604)
T PRK10150 375 PKETYSEEAVNGETQQAHLQAIRELIARDKNHPSVVMWSIANEPA 419 (604)
T ss_pred ccccccccccchhHHHHHHHHHHHHHHhccCCceEEEEeeccCCC
Confidence 01222 3567788888899999999986 77899999974
No 37
>KOG0496 consensus Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=95.08 E-value=0.1 Score=55.11 Aligned_cols=109 Identities=16% Similarity=0.149 Sum_probs=83.7
Q ss_pred CcHHHHHHHHHcCCCeEEecccccccccCCCCCcCChhHHHHHHHHHHHHHHcCCeeEEEe--------ccCCCchhHHh
Q 017199 78 RYKEDIDLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTL--------YHWDLPLHLHE 149 (375)
Q Consensus 78 ~y~eDi~l~~~lG~~~~R~si~W~ri~P~~~g~~~n~~~l~~y~~~i~~l~~~gi~p~vtL--------~H~~~P~~l~~ 149 (375)
.|++=|+.+|++|+|++-.=+.|.-.||.+ | ++|.+|.-=...+|..+.+.|+-+++-+ .+-.+|.||..
T Consensus 50 ~W~~~i~k~k~~Gln~IqtYVfWn~Hep~~-g-~y~FsG~~DlvkFikl~~~~GLyv~LRiGPyIcaEw~~GG~P~wL~~ 127 (649)
T KOG0496|consen 50 MWPDLIKKAKAGGLNVIQTYVFWNLHEPSP-G-KYDFSGRYDLVKFIKLIHKAGLYVILRIGPYICAEWNFGGLPWWLRN 127 (649)
T ss_pred hhHHHHHHHHhcCCceeeeeeecccccCCC-C-cccccchhHHHHHHHHHHHCCeEEEecCCCeEEecccCCCcchhhhh
Confidence 466669999999999999999999999998 8 9999998778888999999998877654 36688988876
Q ss_pred hcCC-C--CCHHHHHHHHHHHHHHHHHcC-------CCcceEEeccccc
Q 017199 150 SMGG-W--LNKEIVKYFEIYADTCFASFG-------DRVKNWITINEPL 188 (375)
Q Consensus 150 ~~gg-~--~~~~~~~~f~~ya~~~~~~~~-------d~V~~w~t~NEp~ 188 (375)
.-|. + .|+.+..+..+|.+.++...+ +=|-.-.+=||-.
T Consensus 128 ~pg~~~Rt~nepfk~~~~~~~~~iv~~mk~L~~~qGGPIIl~QIENEYG 176 (649)
T KOG0496|consen 128 VPGIVFRTDNEPFKAEMERWTTKIVPMMKKLFASQGGPIILVQIENEYG 176 (649)
T ss_pred CCceEEecCChHHHHHHHHHHHHHHHHHHHHHhhcCCCEEEEEeechhh
Confidence 5222 1 357788888888888887433 1233445666654
No 38
>PF14488 DUF4434: Domain of unknown function (DUF4434)
Probab=94.56 E-value=0.23 Score=44.20 Aligned_cols=103 Identities=19% Similarity=0.347 Sum_probs=67.2
Q ss_pred cCcHHHHHHHHHcCCCeEEecccccccc-----cCC--CCCcCChhHHHHHHHHHHHHHHcCCeeEEEeccCCCchhHHh
Q 017199 77 HRYKEDIDLIAKLGFDAYRFSISWSRIF-----PDG--LGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLPLHLHE 149 (375)
Q Consensus 77 ~~y~eDi~l~~~lG~~~~R~si~W~ri~-----P~~--~g~~~n~~~l~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~ 149 (375)
.+|+++++.|+++|++++=+- |+... |.. .+ .+.....+..+.+++++.++||++++.|+. -|.|...
T Consensus 20 ~~W~~~~~~m~~~GidtlIlq--~~~~~~~~~yps~~~~~-~~~~~~~d~l~~~L~~A~~~Gmkv~~Gl~~--~~~~w~~ 94 (166)
T PF14488_consen 20 AQWREEFRAMKAIGIDTLILQ--WTGYGGFAFYPSKLSPG-GFYMPPVDLLEMILDAADKYGMKVFVGLYF--DPDYWDQ 94 (166)
T ss_pred HHHHHHHHHHHHcCCcEEEEE--EeecCCcccCCccccCc-cccCCcccHHHHHHHHHHHcCCEEEEeCCC--Cchhhhc
Confidence 468999999999999988432 43332 111 01 122234478999999999999999999973 4566652
Q ss_pred hcCCCCCHH-HHHHHHHHHHHHHHHcCCC--cceEEeccccch
Q 017199 150 SMGGWLNKE-IVKYFEIYADTCFASFGDR--VKNWITINEPLQ 189 (375)
Q Consensus 150 ~~gg~~~~~-~~~~f~~ya~~~~~~~~d~--V~~w~t~NEp~~ 189 (375)
.+.+ -++.=..-++.+.++||.+ +.-|-+=.|+.-
T Consensus 95 -----~~~~~~~~~~~~v~~el~~~yg~h~sf~GWYip~E~~~ 132 (166)
T PF14488_consen 95 -----GDLDWEAERNKQVADELWQRYGHHPSFYGWYIPYEIDD 132 (166)
T ss_pred -----cCHHHHHHHHHHHHHHHHHHHcCCCCCceEEEecccCC
Confidence 2221 2333344667788899875 455777677653
No 39
>PRK09525 lacZ beta-D-galactosidase; Reviewed
Probab=92.14 E-value=0.62 Score=52.92 Aligned_cols=91 Identities=15% Similarity=0.102 Sum_probs=62.1
Q ss_pred cccCcHHHHHHHHHcCCCeEEecccccccccCCCCCcCChhHHHHHHHHHHHHHHcCCeeEEEec---cCCCchhHHhhc
Q 017199 75 HYHRYKEDIDLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLY---HWDLPLHLHESM 151 (375)
Q Consensus 75 ~~~~y~eDi~l~~~lG~~~~R~si~W~ri~P~~~g~~~n~~~l~~y~~~i~~l~~~gi~p~vtL~---H~~~P~~l~~~~ 151 (375)
....+++||++||++|+|++|+|. .|. + ..+.+.|=+.||-++--.. |.-.|. .
T Consensus 369 t~e~~~~di~lmK~~g~NaVR~sH-----yP~------~-------p~fydlcDe~GilV~dE~~~e~hg~~~~---~-- 425 (1027)
T PRK09525 369 DEETMVQDILLMKQHNFNAVRCSH-----YPN------H-------PLWYELCDRYGLYVVDEANIETHGMVPM---N-- 425 (1027)
T ss_pred CHHHHHHHHHHHHHCCCCEEEecC-----CCC------C-------HHHHHHHHHcCCEEEEecCccccCCccc---c--
Confidence 445678999999999999999962 222 1 2334667788998776542 211110 0
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHcCCC--cceEEeccccc
Q 017199 152 GGWLNKEIVKYFEIYADTCFASFGDR--VKNWITINEPL 188 (375)
Q Consensus 152 gg~~~~~~~~~f~~ya~~~~~~~~d~--V~~w~t~NEp~ 188 (375)
....+++..+.+.+=++.+++|.+++ |-.|...||+.
T Consensus 426 ~~~~dp~~~~~~~~~~~~mV~RdrNHPSIi~WSlgNE~~ 464 (1027)
T PRK09525 426 RLSDDPRWLPAMSERVTRMVQRDRNHPSIIIWSLGNESG 464 (1027)
T ss_pred CCCCCHHHHHHHHHHHHHHHHhCCCCCEEEEEeCccCCC
Confidence 01124666777777788899999986 77899999975
No 40
>COG3664 XynB Beta-xylosidase [Carbohydrate transport and metabolism]
Probab=91.78 E-value=0.27 Score=49.46 Aligned_cols=100 Identities=17% Similarity=0.200 Sum_probs=74.0
Q ss_pred HHHcCCCeEEecccccccccCCCCCcCChhHHHHHHHHHHHHHHcCCeeEEEeccCCCchhHHhhcCCCC--CHHHHHHH
Q 017199 86 IAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLPLHLHESMGGWL--NKEIVKYF 163 (375)
Q Consensus 86 ~~~lG~~~~R~si~W~ri~P~~~g~~~n~~~l~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~gg~~--~~~~~~~f 163 (375)
-+|+||+-+|.---|.-++-.. -+++ .++|+++|.+...|+.-+.+-.||+.+.-....|.+=. .....+++
T Consensus 14 ~~Ei~v~yi~~~~v~h~~~q~~---~~~~---t~~d~i~d~~~~~~~~~ie~~l~~~~l~~~~~~wq~n~~~~~~~~dl~ 87 (428)
T COG3664 14 DDEIQVNYIRRHGVWHVNAQKL---FYPF---TYIDEIIDTLLDLGLDLIELFLIWNNLNTKEHQWQLNVDDPKSVFDLI 87 (428)
T ss_pred hhhhceeeehhcceeeeeeccc---cCCh---HHHHHHHHHHHHhccHHHHHhhcccchhhhhhhcccccCCcHhHHHHH
Confidence 3789999999988888333332 4554 88999999999999666666677777766554343322 23478999
Q ss_pred HHHHHHHHHHcCCC-cc--eEEeccccchhh
Q 017199 164 EIYADTCFASFGDR-VK--NWITINEPLQTA 191 (375)
Q Consensus 164 ~~ya~~~~~~~~d~-V~--~w~t~NEp~~~~ 191 (375)
+.++.-|+.++|-+ |. ....+||||..+
T Consensus 88 ~~fl~h~~~~vg~e~v~kw~f~~~~~pn~~a 118 (428)
T COG3664 88 AAFLKHVIRRVGVEFVRKWPFYSPNEPNLLA 118 (428)
T ss_pred HHHHHHHHHHhChhheeecceeecCCCCccc
Confidence 99999999999963 33 356999999874
No 41
>PRK10340 ebgA cryptic beta-D-galactosidase subunit alpha; Reviewed
Probab=90.90 E-value=1 Score=51.12 Aligned_cols=91 Identities=13% Similarity=0.123 Sum_probs=61.4
Q ss_pred cccCcHHHHHHHHHcCCCeEEecccccccccCCCCCcCChhHHHHHHHHHHHHHHcCCeeEEEec---c-CCCchhHHhh
Q 017199 75 HYHRYKEDIDLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLY---H-WDLPLHLHES 150 (375)
Q Consensus 75 ~~~~y~eDi~l~~~lG~~~~R~si~W~ri~P~~~g~~~n~~~l~~y~~~i~~l~~~gi~p~vtL~---H-~~~P~~l~~~ 150 (375)
....+++||++||++|+|++|+|. .|.. ..+.+.|=+.||-++--.. | |.... .
T Consensus 353 ~~e~~~~dl~lmK~~g~NavR~sH-----yP~~-------------~~fydlcDe~GllV~dE~~~e~~g~~~~~----~ 410 (1021)
T PRK10340 353 GMDRVEKDIQLMKQHNINSVRTAH-----YPND-------------PRFYELCDIYGLFVMAETDVESHGFANVG----D 410 (1021)
T ss_pred CHHHHHHHHHHHHHCCCCEEEecC-----CCCC-------------HHHHHHHHHCCCEEEECCcccccCccccc----c
Confidence 346788999999999999999962 3332 2345677789998776431 1 11100 0
Q ss_pred cCCC--CCHHHHHHHHHHHHHHHHHcCCC--cceEEeccccc
Q 017199 151 MGGW--LNKEIVKYFEIYADTCFASFGDR--VKNWITINEPL 188 (375)
Q Consensus 151 ~gg~--~~~~~~~~f~~ya~~~~~~~~d~--V~~w~t~NEp~ 188 (375)
+ .+ .++...+.|.+=++.+++|.+++ |-.|..-||..
T Consensus 411 ~-~~~~~~p~~~~~~~~~~~~mV~RdrNHPSIi~WslGNE~~ 451 (1021)
T PRK10340 411 I-SRITDDPQWEKVYVDRIVRHIHAQKNHPSIIIWSLGNESG 451 (1021)
T ss_pred c-ccccCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccCcc
Confidence 0 01 23445567777788899999986 77899999973
No 42
>COG3250 LacZ Beta-galactosidase/beta-glucuronidase [Carbohydrate transport and metabolism]
Probab=88.51 E-value=2.1 Score=47.26 Aligned_cols=91 Identities=15% Similarity=0.065 Sum_probs=64.0
Q ss_pred CCcccCcHHHHHHHHHcCCCeEEecccccccccCCCCCcCChhHHHHHHHHHHHHHHcCCeeEEEeccCCCchhHHhhcC
Q 017199 73 VDHYHRYKEDIDLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLPLHLHESMG 152 (375)
Q Consensus 73 ~~~~~~y~eDi~l~~~lG~~~~R~si~W~ri~P~~~g~~~n~~~l~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~g 152 (375)
+..+..+.+|+++||++|+|++|.| =. ++. ....+.|=+.||-++=-..+.. ++
T Consensus 317 ~~~~~~~~~dl~lmk~~n~N~vRts-----Hy-------P~~------~~~ydLcDelGllV~~Ea~~~~--------~~ 370 (808)
T COG3250 317 VTDEDAMERDLKLMKEANMNSVRTS-----HY-------PNS------EEFYDLCDELGLLVIDEAMIET--------HG 370 (808)
T ss_pred ccCHHHHHHHHHHHHHcCCCEEEec-----CC-------CCC------HHHHHHHHHhCcEEEEecchhh--------cC
Confidence 4455669999999999999999998 22 332 3345566678998877554211 13
Q ss_pred CCCCHHHHHHHHHHHHHHHHHcCCC--cceEEeccccch
Q 017199 153 GWLNKEIVKYFEIYADTCFASFGDR--VKNWITINEPLQ 189 (375)
Q Consensus 153 g~~~~~~~~~f~~ya~~~~~~~~d~--V~~w~t~NEp~~ 189 (375)
+...++..+...+=++..++|-++. |-.|..-||.+.
T Consensus 371 ~~~~~~~~k~~~~~i~~mver~knHPSIiiWs~gNE~~~ 409 (808)
T COG3250 371 MPDDPEWRKEVSEEVRRMVERDRNHPSIIIWSLGNESGH 409 (808)
T ss_pred CCCCcchhHHHHHHHHHHHHhccCCCcEEEEeccccccC
Confidence 3344555666666688899998875 778999999663
No 43
>PF07488 Glyco_hydro_67M: Glycosyl hydrolase family 67 middle domain; InterPro: IPR011100 Alpha-glucuronidases, components of an ensemble of enzymes central to the recycling of photosynthetic biomass, remove the alpha-1,2 linked 4-O-methyl glucuronic acid from xylans. This family represents the central catalytic domain of alpha-glucuronidase [].; GO: 0046559 alpha-glucuronidase activity, 0045493 xylan catabolic process, 0005576 extracellular region; PDB: 1MQP_A 1K9E_A 1MQQ_A 1L8N_A 1K9D_A 1MQR_A 1K9F_A 1GQL_A 1GQI_B 1GQJ_B ....
Probab=87.57 E-value=5.8 Score=38.72 Aligned_cols=91 Identities=21% Similarity=0.400 Sum_probs=62.4
Q ss_pred ccCcHHHHHHHHHcCCCeEEecccccccccCCCCCcCChhHHHHHHHHHHHHHHcCCeeEEEeccCCCchhHHhhcCC--
Q 017199 76 YHRYKEDIDLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLPLHLHESMGG-- 153 (375)
Q Consensus 76 ~~~y~eDi~l~~~lG~~~~R~si~W~ri~P~~~g~~~n~~~l~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~gg-- 153 (375)
..||.+--+++++.|||.+=+.= +--.+ - .+..+-+..+.++-+.++.+||++.+++. |..|.-+ ||
T Consensus 56 ~~R~~~YARllASiGINgvvlNN----VNa~~-~-~Lt~~~l~~v~~lAdvfRpYGIkv~LSvn-FasP~~l----ggL~ 124 (328)
T PF07488_consen 56 LTRYRDYARLLASIGINGVVLNN----VNANP-K-LLTPEYLDKVARLADVFRPYGIKVYLSVN-FASPIEL----GGLP 124 (328)
T ss_dssp -HHHHHHHHHHHHTT--EEE-S-----SS--C-G-GGSTTTHHHHHHHHHHHHHTT-EEEEEE--TTHHHHT----TS-S
T ss_pred hhHHHHHHHHHhhcCCceEEecc----cccCh-h-hcCHHHHHHHHHHHHHHhhcCCEEEEEee-ccCCccc----CCcC
Confidence 45788889999999999876432 00000 1 22334477888999999999999999996 7888764 55
Q ss_pred ---CCCHHHHHHHHHHHHHHHHHcCCC
Q 017199 154 ---WLNKEIVKYFEIYADTCFASFGDR 177 (375)
Q Consensus 154 ---~~~~~~~~~f~~ya~~~~~~~~d~ 177 (375)
-.++++...+.+=++.+.++.-|-
T Consensus 125 TaDPld~~V~~WW~~k~~eIY~~IPDf 151 (328)
T PF07488_consen 125 TADPLDPEVRQWWKDKADEIYSAIPDF 151 (328)
T ss_dssp ---TTSHHHHHHHHHHHHHHHHH-TT-
T ss_pred cCCCCCHHHHHHHHHHHHHHHHhCCCc
Confidence 357899999999999999988663
No 44
>PF02638 DUF187: Glycosyl hydrolase like GH101; InterPro: IPR003790 This entry describes proteins of unknown function.
Probab=85.82 E-value=26 Score=34.34 Aligned_cols=99 Identities=19% Similarity=0.277 Sum_probs=64.6
Q ss_pred cCcHHHHHHHHHcCCCeEEecccc-------cccccCC---CCCcCChhHHHHHHHHHHHHHHcCCeeEEEe-cc-----
Q 017199 77 HRYKEDIDLIAKLGFDAYRFSISW-------SRIFPDG---LGTKINMEGITFYNNIIDALLQKGIQPYVTL-YH----- 140 (375)
Q Consensus 77 ~~y~eDi~l~~~lG~~~~R~si~W-------~ri~P~~---~g~~~n~~~l~~y~~~i~~l~~~gi~p~vtL-~H----- 140 (375)
...++-++.++++|+|++=+.+.+ |.++|.. .|......+.+.+..+|++++++||++..-+ ..
T Consensus 19 ~~~~~~l~~l~~~~~N~V~~qVr~~gda~Y~S~~~p~s~~~~g~~~~~pg~DpL~~~I~eaHkrGlevHAW~~~~~~~~~ 98 (311)
T PF02638_consen 19 EQIDEMLDDLKSAGFNAVFVQVRPRGDALYPSDIEPWSGYLTGKQGKDPGFDPLEFMIEEAHKRGLEVHAWFRVGFNAPD 98 (311)
T ss_pred HHHHHHHHHHHHcCCCEEEEEEEeCcEEEecccccccccccCCCCCCCCCccHHHHHHHHHHHcCCEEEEEEEeecCCCc
Confidence 345677899999999987655433 3344421 0101111256789999999999999987544 11
Q ss_pred -----CCCchhHHhh-------c----CC--CC---CHHHHHHHHHHHHHHHHHcC
Q 017199 141 -----WDLPLHLHES-------M----GG--WL---NKEIVKYFEIYADTCFASFG 175 (375)
Q Consensus 141 -----~~~P~~l~~~-------~----gg--~~---~~~~~~~f~~ya~~~~~~~~ 175 (375)
-..|.|+..+ + ++ |. +|++.+...+-++.++++|.
T Consensus 99 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~lnP~~PeVr~~i~~~v~Eiv~~Yd 154 (311)
T PF02638_consen 99 VSHILKKHPEWFAVNHPGWVRTYEDANGGYYWLNPGHPEVRDYIIDIVKEIVKNYD 154 (311)
T ss_pred hhhhhhcCchhheecCCCceeecccCCCCceEECCCCHHHHHHHHHHHHHHHhcCC
Confidence 1246665421 1 22 44 47899999999999999996
No 45
>KOG2233 consensus Alpha-N-acetylglucosaminidase [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.22 E-value=7.8 Score=40.12 Aligned_cols=137 Identities=19% Similarity=0.316 Sum_probs=83.8
Q ss_pred ccCcHHHHHHHHHcCCCeEEec----ccccccccCC----------------------------CCCcCCh----hHHHH
Q 017199 76 YHRYKEDIDLIAKLGFDAYRFS----ISWSRIFPDG----------------------------LGTKINM----EGITF 119 (375)
Q Consensus 76 ~~~y~eDi~l~~~lG~~~~R~s----i~W~ri~P~~----------------------------~g~~~n~----~~l~~ 119 (375)
|.+|+..|+-|+-+|||..=.. +-|.+|+-.- .| .+.. ..+-.
T Consensus 77 w~qWeR~iDWmALnGinl~la~~gQEaIWqkVf~~lgl~~eeldeyftgpAflAW~RMGNl~awgG-pLs~aw~~~ql~L 155 (666)
T KOG2233|consen 77 WEQWEREIDWMALNGINLVLAPLGQEAIWQKVFMGLGLQREELDEYFTGPAFLAWHRMGNLHAWGG-PLSPAWMLNQLLL 155 (666)
T ss_pred hHHHHhHhhHHHHcCcceeeccchhHHHHHHHHHHcCCCHHHHHHhcccHHHHHHHHhcCccccCC-CCCHHHHHHHHHH
Confidence 5789999999999999976433 2355544331 02 3322 12334
Q ss_pred HHHHHHHHHHcCCeeEEEeccCCCchhHHhhc--------CCCCC---------------HHHHHHHHHHHHHHHHHcCC
Q 017199 120 YNNIIDALLQKGIQPYVTLYHWDLPLHLHESM--------GGWLN---------------KEIVKYFEIYADTCFASFGD 176 (375)
Q Consensus 120 y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~--------gg~~~---------------~~~~~~f~~ya~~~~~~~~d 176 (375)
=.++|+++++-||+|++--+-.-.|..|..-+ +.|.+ |-+.+-=..|.+...+.||+
T Consensus 156 qkrIidrm~~lGmTpvLPaFaG~VP~al~rlfPesnf~rl~rWn~f~s~~~C~l~v~P~dplF~eIgs~Flr~~~kefG~ 235 (666)
T KOG2233|consen 156 QKRIIDRMLELGMTPVLPAFAGHVPDALERLFPESNFTRLPRWNNFTSRYSCMLLVSPFDPLFQEIGSTFLRHQIKEFGG 235 (666)
T ss_pred HHHHHHHHHHcCCCccchhhccccHHHHHHhCchhceeeccccCCCCcceeeeEEccCCcchHHHHHHHHHHHHHHHhCC
Confidence 46899999999999999888777888877543 22321 22333334456667788996
Q ss_pred CcceE--EeccccchhhcccccccccCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHhhc
Q 017199 177 RVKNW--ITINEPLQTAVNGYCTGIFAPGRHQHSSTEPYLVAHHQILAHAAAFSVYQRKYK 235 (375)
Q Consensus 177 ~V~~w--~t~NEp~~~~~~gy~~g~~~p~~~~~~~~~~~~~~h~~llAHa~Av~~~k~~~~ 235 (375)
--..+ -||||.. ||... . ..+-.+.+..|+.+++..+
T Consensus 236 ~tniy~~DpFNE~~------------Pp~se----p------ey~~staaAiyesm~kvdk 274 (666)
T KOG2233|consen 236 VTNIYSADPFNEIL------------PPESE----P------EYVKSTAAAIYESMKKVDK 274 (666)
T ss_pred cccccccCcccccC------------CCCCC----h------HHHHHHHHHHHHHHhccCc
Confidence 32223 3899853 55321 1 1233345567788887653
No 46
>PF03198 Glyco_hydro_72: Glucanosyltransferase; InterPro: IPR004886 This family is a group of yeast glycolipid proteins anchored to the membrane. It includes Candida albicans (Yeast) pH-regulated protein, which is required for apical growth and plays a role in morphogenesis and Saccharomyces cerevisiae glycolipid anchored surface protein.; PDB: 2W61_A 2W62_A 2W63_A.
Probab=84.23 E-value=6.2 Score=38.69 Aligned_cols=90 Identities=20% Similarity=0.244 Sum_probs=50.8
Q ss_pred CcHHHHHHHHHcCCCeEEecccccccccCCCCCcCChhHHHHHHHHHHHHHHcCCeeEEEeccCCCchhHHhhcCCCCCH
Q 017199 78 RYKEDIDLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLPLHLHESMGGWLNK 157 (375)
Q Consensus 78 ~y~eDi~l~~~lG~~~~R~si~W~ri~P~~~g~~~n~~~l~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~gg~~~~ 157 (375)
..+.|+.+|++||+|++|+=- |-|. .| .|..++.|.++||-+++.|. .|.---.+...|..-
T Consensus 54 ~C~rDi~~l~~LgiNtIRVY~----vdp~-----~n------Hd~CM~~~~~aGIYvi~Dl~---~p~~sI~r~~P~~sw 115 (314)
T PF03198_consen 54 ACKRDIPLLKELGINTIRVYS----VDPS-----KN------HDECMSAFADAGIYVILDLN---TPNGSINRSDPAPSW 115 (314)
T ss_dssp HHHHHHHHHHHHT-SEEEES-------TT-----S--------HHHHHHHHHTT-EEEEES----BTTBS--TTS-----
T ss_pred HHHHhHHHHHHcCCCEEEEEE----eCCC-----CC------HHHHHHHHHhCCCEEEEecC---CCCccccCCCCcCCC
Confidence 578999999999999999732 2222 22 58888999999999999995 452211221111111
Q ss_pred HHHHHHHHHHHHHHHHcCC--CcceEEecccc
Q 017199 158 EIVKYFEIYADTCFASFGD--RVKNWITINEP 187 (375)
Q Consensus 158 ~~~~~f~~ya~~~~~~~~d--~V~~w~t~NEp 187 (375)
....|.+|... ++.|+. .|--+..=||-
T Consensus 116 -~~~l~~~~~~v-id~fa~Y~N~LgFf~GNEV 145 (314)
T PF03198_consen 116 -NTDLLDRYFAV-IDAFAKYDNTLGFFAGNEV 145 (314)
T ss_dssp --HHHHHHHHHH-HHHHTT-TTEEEEEEEESS
T ss_pred -CHHHHHHHHHH-HHHhccCCceEEEEeccee
Confidence 23555555544 444443 35556777774
No 47
>smart00642 Aamy Alpha-amylase domain.
Probab=82.53 E-value=3.9 Score=36.23 Aligned_cols=66 Identities=18% Similarity=0.273 Sum_probs=45.0
Q ss_pred CcccCcHHHHHHHHHcCCCeEEeccccccccc--CCCC------CcCCh--hHHHHHHHHHHHHHHcCCeeEEEec
Q 017199 74 DHYHRYKEDIDLIAKLGFDAYRFSISWSRIFP--DGLG------TKINM--EGITFYNNIIDALLQKGIQPYVTLY 139 (375)
Q Consensus 74 ~~~~~y~eDi~l~~~lG~~~~R~si~W~ri~P--~~~g------~~~n~--~~l~~y~~~i~~l~~~gi~p~vtL~ 139 (375)
..+....+-++-++++|++++-++=-+..... ...| ..+++ -..+-++++|++|+++||++++.+.
T Consensus 16 G~~~gi~~~l~yl~~lG~~~I~l~Pi~~~~~~~~~~~gY~~~d~~~i~~~~Gt~~d~~~lv~~~h~~Gi~vilD~V 91 (166)
T smart00642 16 GDLQGIIEKLDYLKDLGVTAIWLSPIFESPQGYPSYHGYDISDYKQIDPRFGTMEDFKELVDAAHARGIKVILDVV 91 (166)
T ss_pred cCHHHHHHHHHHHHHCCCCEEEECcceeCCCCCCCCCCcCccccCCCCcccCCHHHHHHHHHHHHHCCCEEEEEEC
Confidence 34555667788999999999988765544431 1001 01221 1346689999999999999999874
No 48
>COG3934 Endo-beta-mannanase [Carbohydrate transport and metabolism]
Probab=80.64 E-value=0.97 Score=46.49 Aligned_cols=110 Identities=15% Similarity=0.138 Sum_probs=77.7
Q ss_pred CcHHHHHHHHHcCCCeEEecc-cccccccCCCCCcCChhH-HHHHHHHHHHHHHcCCeeEEEec----cCCCchhHHhhc
Q 017199 78 RYKEDIDLIAKLGFDAYRFSI-SWSRIFPDGLGTKINMEG-ITFYNNIIDALLQKGIQPYVTLY----HWDLPLHLHESM 151 (375)
Q Consensus 78 ~y~eDi~l~~~lG~~~~R~si-~W~ri~P~~~g~~~n~~~-l~~y~~~i~~l~~~gi~p~vtL~----H~~~P~~l~~~~ 151 (375)
..+.|+..++.+|++..|++| +=...--. .| ..|.+. +.+.+.+++.+...+|+.++||. |+.--.|-..=.
T Consensus 27 ei~~dle~a~~vg~k~lR~fiLDgEdc~d~-~G-~~na~s~~~y~~~fla~a~~l~lkvlitlivg~~hmgg~Nw~Ipwa 104 (587)
T COG3934 27 EIKADLEPAGFVGVKDLRLFILDGEDCRDK-EG-YRNAGSNVWYAAWFLAPAGYLDLKVLITLIVGLKHMGGTNWRIPWA 104 (587)
T ss_pred hhhcccccccCccceeEEEEEecCcchhhh-hc-eecccccHHHHHHHhhhcccCcceEEEEEeecccccCcceeEeecC
Confidence 345788999999999999995 21222112 26 667654 88999999999999999999986 333222211000
Q ss_pred CC------CCCHHHHHHHHHHHHHHHHHcCCC--cceEEeccccch
Q 017199 152 GG------WLNKEIVKYFEIYADTCFASFGDR--VKNWITINEPLQ 189 (375)
Q Consensus 152 gg------~~~~~~~~~f~~ya~~~~~~~~d~--V~~w~t~NEp~~ 189 (375)
|+ ...+.....|.+|++-+++.|+-. +--|+.-|||-+
T Consensus 105 g~~~pdn~iyD~k~~~~~kkyvedlVk~yk~~ptI~gw~l~Ne~lv 150 (587)
T COG3934 105 GEQSPDNVIYDPKFRGPGKKYVEDLVKPYKLDPTIAGWALRNEPLV 150 (587)
T ss_pred CCCCccccccchhhcccHHHHHHHHhhhhccChHHHHHHhcCCccc
Confidence 11 124567788999999999999875 556999999776
No 49
>PF12891 Glyco_hydro_44: Glycoside hydrolase family 44; InterPro: IPR024745 This is a family of putative bacterial glycoside hydrolases.; PDB: 3IK2_A 3ZQ9_A 2YJQ_B 2YKK_A 2YIH_A 2EEX_A 2EQD_A 2E0P_A 2E4T_A 2EO7_A ....
Probab=78.12 E-value=7.2 Score=36.81 Aligned_cols=113 Identities=18% Similarity=0.167 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHHcCCeeEEEeccC--------------CCchhHHh----------------hcCC----CCCHH---HH
Q 017199 118 TFYNNIIDALLQKGIQPYVTLYHW--------------DLPLHLHE----------------SMGG----WLNKE---IV 160 (375)
Q Consensus 118 ~~y~~~i~~l~~~gi~p~vtL~H~--------------~~P~~l~~----------------~~gg----~~~~~---~~ 160 (375)
+.++.+|+..++.|..+|+||.=. ..|.|-.. +.+| -.+|+ ..
T Consensus 24 ~~~~~f~~~~~~~ga~~m~T~pm~G~Vakd~~~~~~~~~fp~~~y~~Q~~~d~~~~~~Gng~~~~~~~~~~~~P~~~~~~ 103 (239)
T PF12891_consen 24 DVADTFIDQNLAAGAYSMMTLPMIGYVAKDANSVSESESFPSWRYGPQQWFDPWNPDCGNGVKPDKTALTSNDPDTPDNP 103 (239)
T ss_dssp HHHHHHHHHHHHTT-EEEEEE--SSEEES-BSEGBGGGTSSSTTEEEBS-EETTEEEEE-SEESTSSS--SSSGGSSSSE
T ss_pred HHHHHHHHHhhhcCcceeEeecccceEecCCCCcccccCCChhhcccccccCcCcCCCCccccCCCCCCCCCCCCCCccH
Confidence 789999999999999999998521 11211000 0011 11333 01
Q ss_pred HHHHHHHHHHHHHcCCC-----cceEEeccccchhhcccccccccCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHhhc
Q 017199 161 KYFEIYADTCFASFGDR-----VKNWITINEPLQTAVNGYCTGIFAPGRHQHSSTEPYLVAHHQILAHAAAFSVYQRKYK 235 (375)
Q Consensus 161 ~~f~~ya~~~~~~~~d~-----V~~w~t~NEp~~~~~~gy~~g~~~p~~~~~~~~~~~~~~h~~llAHa~Av~~~k~~~~ 235 (375)
..-.+++..+..+||.. |++|..=|||.+... .|+- .+.....+.-+....++.|+|+| +..|
T Consensus 104 ~y~~ewV~~l~~~~g~a~~~~gvk~y~lDNEP~LW~~------TH~d---VHP~~~t~~El~~r~i~~AkaiK---~~DP 171 (239)
T PF12891_consen 104 VYMDEWVNYLVNKYGNASTNGGVKYYSLDNEPDLWHS------THRD---VHPEPVTYDELRDRSIEYAKAIK---AADP 171 (239)
T ss_dssp EEHHHHHHHHHHHH--TTSTTS--EEEESS-GGGHHH------HTTT---T--S---HHHHHHHHHHHHHHHH---HH-T
T ss_pred hHHHHHHHHHHHHHhccccCCCceEEEecCchHhhcc------cccc---cCCCCCCHHHHHHHHHHHHHHHH---hhCC
Confidence 22334466677777764 999999999998642 2221 11222235556667777777754 4444
Q ss_pred CCCCceE-EEE
Q 017199 236 DKQGGNI-GLV 245 (375)
Q Consensus 236 ~~~~~kV-G~~ 245 (375)
.++| |-+
T Consensus 172 ---~a~v~GP~ 179 (239)
T PF12891_consen 172 ---DAKVFGPV 179 (239)
T ss_dssp ---TSEEEEEE
T ss_pred ---CCeEeech
Confidence 6664 555
No 50
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=77.74 E-value=12 Score=36.19 Aligned_cols=120 Identities=18% Similarity=0.186 Sum_probs=71.1
Q ss_pred CceeeeccccCCccccCCCCCccCCcccCcHHHHHHHHHcCCCeEEecccccccccCCCCCcCChhHHHHHHHHHHHHHH
Q 017199 50 ASIWDDFTHTEGKIIDKSNGDVAVDHYHRYKEDIDLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQ 129 (375)
Q Consensus 50 ~s~wd~~~~~~~~~~~~~~~~~a~~~~~~y~eDi~l~~~lG~~~~R~si~W~ri~P~~~g~~~n~~~l~~y~~~i~~l~~ 129 (375)
.+.|+-|....+. ..+-.+.-.+..+++-|+..+++|+..+=+.--|+.-.............-....++++-.++
T Consensus 9 k~~W~Ww~~~~~~----~~~~~~g~~t~~~k~yIDfAa~~G~eYvlvD~GW~~~~~~~~~d~~~~~~~~dl~elv~Ya~~ 84 (273)
T PF10566_consen 9 KAAWSWWSMHNGK----GVGFKHGATTETQKRYIDFAAEMGIEYVLVDAGWYGWEKDDDFDFTKPIPDFDLPELVDYAKE 84 (273)
T ss_dssp EEEECTCCCCTTS----SBSS-BSSSHHHHHHHHHHHHHTT-SEEEEBTTCCGS--TTT--TT-B-TT--HHHHHHHHHH
T ss_pred eEEEeecccCCCC----CCCCcCCCCHHHHHHHHHHHHHcCCCEEEeccccccccccccccccccCCccCHHHHHHHHHH
Confidence 4667665542211 112234557788999999999999999999999987332211000000111346899999999
Q ss_pred cCCeeEEEeccCC------CchhHHhh---c---C------CC---CCHHHHHHHHHHHHHHHHH
Q 017199 130 KGIQPYVTLYHWD------LPLHLHES---M---G------GW---LNKEIVKYFEIYADTCFAS 173 (375)
Q Consensus 130 ~gi~p~vtL~H~~------~P~~l~~~---~---g------g~---~~~~~~~~f~~ya~~~~~~ 173 (375)
+|+.+++-.+|-+ +=.-+.+. | | +| .+.+.++.|.+.++.++++
T Consensus 85 KgVgi~lw~~~~~~~~~~~~~~~~~~~f~~~~~~Gv~GvKidF~~~d~Q~~v~~y~~i~~~AA~~ 149 (273)
T PF10566_consen 85 KGVGIWLWYHSETGGNVANLEKQLDEAFKLYAKWGVKGVKIDFMDRDDQEMVNWYEDILEDAAEY 149 (273)
T ss_dssp TT-EEEEEEECCHTTBHHHHHCCHHHHHHHHHHCTEEEEEEE--SSTSHHHHHHHHHHHHHHHHT
T ss_pred cCCCEEEEEeCCcchhhHhHHHHHHHHHHHHHHcCCCEEeeCcCCCCCHHHHHHHHHHHHHHHHc
Confidence 9999999888755 21112111 1 1 22 3466888888888887765
No 51
>PRK09058 coproporphyrinogen III oxidase; Provisional
Probab=77.60 E-value=7.9 Score=39.91 Aligned_cols=106 Identities=12% Similarity=0.094 Sum_probs=65.4
Q ss_pred cHHHHHHHHHcCCCeEEecc-ccc-ccccCCCCCcCChhHHHHHHHHHHHHHHcC-CeeEEEeccCCCchhHHhhcCCCC
Q 017199 79 YKEDIDLIAKLGFDAYRFSI-SWS-RIFPDGLGTKINMEGITFYNNIIDALLQKG-IQPYVTLYHWDLPLHLHESMGGWL 155 (375)
Q Consensus 79 y~eDi~l~~~lG~~~~R~si-~W~-ri~P~~~g~~~n~~~l~~y~~~i~~l~~~g-i~p~vtL~H~~~P~~l~~~~gg~~ 155 (375)
-+|.+++|+++|+|.+-+++ +-+ .+...- | +.. ..+-..+.|+.+++.| +.+.++|. +++|. .
T Consensus 162 t~e~l~~l~~aGvnRiSiGVQSf~d~vLk~l-g-R~~--~~~~~~~~i~~l~~~g~~~v~~DlI-~GlPg---------q 227 (449)
T PRK09058 162 DDEKADAALDAGANRFSIGVQSFNTQVRRRA-G-RKD--DREEVLARLEELVARDRAAVVCDLI-FGLPG---------Q 227 (449)
T ss_pred CHHHHHHHHHcCCCEEEecCCcCCHHHHHHh-C-CCC--CHHHHHHHHHHHHhCCCCcEEEEEE-eeCCC---------C
Confidence 46789999999999888877 332 222211 3 221 1345677899999999 66777776 46662 1
Q ss_pred CHHHHHHHHHHHHHHHHHcCCCcceEEeccccchhhcccccccccC
Q 017199 156 NKEIVKYFEIYADTCFASFGDRVKNWITINEPLQTAVNGYCTGIFA 201 (375)
Q Consensus 156 ~~~~~~~f~~ya~~~~~~~~d~V~~w~t~NEp~~~~~~gy~~g~~~ 201 (375)
+.+.|.+=.+.+.+.=-+.|..+...-||+......+..|.++
T Consensus 228 ---T~e~~~~~l~~~~~l~~~~is~y~L~~~pgT~l~~~~~~g~l~ 270 (449)
T PRK09058 228 ---TPEIWQQDLAIVRDLGLDGVDLYALNLLPGTPLAKAVEKGKLP 270 (449)
T ss_pred ---CHHHHHHHHHHHHhcCCCEEEEeccccCCCCHHHHHHHcCCCC
Confidence 2334444455544433367888888888887544434445554
No 52
>PF12876 Cellulase-like: Sugar-binding cellulase-like; InterPro: IPR024778 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This entry represents a family of putative cellulase enzymes.; PDB: 3GYC_B.
Probab=75.56 E-value=4 Score=32.07 Aligned_cols=19 Identities=37% Similarity=0.613 Sum_probs=13.9
Q ss_pred HHHHcCC--CcceEEeccc-cc
Q 017199 170 CFASFGD--RVKNWITINE-PL 188 (375)
Q Consensus 170 ~~~~~~d--~V~~w~t~NE-p~ 188 (375)
++++||+ +|-+|.++|| |+
T Consensus 1 iv~~~~~~~~Il~Wdl~NE~p~ 22 (88)
T PF12876_consen 1 IVTRFGYDPRILAWDLWNEPPN 22 (88)
T ss_dssp -HHHTT-GGGEEEEESSTTTT-
T ss_pred CchhhcCCCCEEEEEeecCCCC
Confidence 4677776 7999999999 76
No 53
>COG3534 AbfA Alpha-L-arabinofuranosidase [Carbohydrate transport and metabolism]
Probab=74.25 E-value=18 Score=37.19 Aligned_cols=88 Identities=19% Similarity=0.371 Sum_probs=60.7
Q ss_pred cHHH-HHHHHHcCCCeEEe-------------------------cccccccccCCCCCcCChhHHHHHHHHHHHHHHcCC
Q 017199 79 YKED-IDLIAKLGFDAYRF-------------------------SISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGI 132 (375)
Q Consensus 79 y~eD-i~l~~~lG~~~~R~-------------------------si~W~ri~P~~~g~~~n~~~l~~y~~~i~~l~~~gi 132 (375)
++.| +.++|+|.+...|+ .+.|.-.|+.+.| .+++++.|+..|.
T Consensus 50 ~RkDVle~lk~Lk~P~lR~PGGnFvs~Y~WeDGIGP~e~Rp~rldlaW~t~EtN~~G----------t~EF~~~~e~iGa 119 (501)
T COG3534 50 FRKDVLEALKDLKIPVLRWPGGNFVSGYHWEDGIGPREERPRRLDLAWGTTETNEFG----------THEFMDWCELIGA 119 (501)
T ss_pred hHHHHHHHHHhcCCceeecCCcccccccccccCcCchhhCchhhccccccccccccc----------HHHHHHHHHHhCC
Confidence 5666 68899999998884 3444433333323 4789999999999
Q ss_pred eeEEEeccCCCchhHHhhcCCCCCHHHHHHHHHHHHH--------HHHHcCC----CcceEEeccccc
Q 017199 133 QPYVTLYHWDLPLHLHESMGGWLNKEIVKYFEIYADT--------CFASFGD----RVKNWITINEPL 188 (375)
Q Consensus 133 ~p~vtL~H~~~P~~l~~~~gg~~~~~~~~~f~~ya~~--------~~~~~~d----~V~~w~t~NEp~ 188 (375)
+|++.+.= |=...+....|.+||.. .=+..|. .|++|.+=||-.
T Consensus 120 ep~~avN~------------Gsrgvd~ar~~vEY~n~pggtywsdlR~~~G~~~P~nvK~w~lGNEm~ 175 (501)
T COG3534 120 EPYIAVNL------------GSRGVDEARNWVEYCNHPGGTYWSDLRRENGREEPWNVKYWGLGNEMD 175 (501)
T ss_pred ceEEEEec------------CCccHHHHHHHHHHccCCCCChhHHHHHhcCCCCCcccceEEeccccC
Confidence 99999851 22345566777777643 3334443 599999999964
No 54
>PRK05799 coproporphyrinogen III oxidase; Provisional
Probab=73.71 E-value=7.3 Score=38.89 Aligned_cols=104 Identities=14% Similarity=0.193 Sum_probs=60.2
Q ss_pred cHHHHHHHHHcCCCeEEecccccccccCC---CCCcCChhHHHHHHHHHHHHHHcCCeeE-EEeccCCCchhHHhhcCCC
Q 017199 79 YKEDIDLIAKLGFDAYRFSISWSRIFPDG---LGTKINMEGITFYNNIIDALLQKGIQPY-VTLYHWDLPLHLHESMGGW 154 (375)
Q Consensus 79 y~eDi~l~~~lG~~~~R~si~W~ri~P~~---~g~~~n~~~l~~y~~~i~~l~~~gi~p~-vtL~H~~~P~~l~~~~gg~ 154 (375)
-++.++.|+++|++.+-+++ .-+-++- -| +.. ..+-+.+.|+.+++.|+..+ +.+. +++|.
T Consensus 98 t~e~l~~l~~~G~~rvsiGv--qS~~d~~L~~l~-R~~--~~~~~~~ai~~l~~~g~~~v~~dli-~GlPg--------- 162 (374)
T PRK05799 98 TEEKLKILKSMGVNRLSIGL--QAWQNSLLKYLG-RIH--TFEEFLENYKLARKLGFNNINVDLM-FGLPN--------- 162 (374)
T ss_pred CHHHHHHHHHcCCCEEEEEC--ccCCHHHHHHcC-CCC--CHHHHHHHHHHHHHcCCCcEEEEee-cCCCC---------
Confidence 45789999999999554444 3333321 13 211 24567889999999999743 5554 45552
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCCcceEEeccccchhhccccccccc
Q 017199 155 LNKEIVKYFEIYADTCFASFGDRVKNWITINEPLQTAVNGYCTGIF 200 (375)
Q Consensus 155 ~~~~~~~~f~~ya~~~~~~~~d~V~~w~t~NEp~~~~~~gy~~g~~ 200 (375)
. +.+.|.+-.+.+.+.=-+.|..+...-+|+.....-+..|.+
T Consensus 163 q---t~e~~~~~l~~~~~l~~~~is~y~l~~~pgT~l~~~~~~g~~ 205 (374)
T PRK05799 163 Q---TLEDWKETLEKVVELNPEHISCYSLIIEEGTPFYNLYENGKL 205 (374)
T ss_pred C---CHHHHHHHHHHHHhcCCCEEEEeccEecCCCHHHHHHhcCCC
Confidence 2 344555555555543235566665555787554333333433
No 55
>PF00128 Alpha-amylase: Alpha amylase, catalytic domain; InterPro: IPR006047 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain, such as alpha-amylase, belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins. This entry represents the catalytic domain found in several protein members of this family. It has a structure consisting of an 8 stranded alpha/beta barrel that contains the active site, interrupted by a ~70 amino acid calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 3FAX_A 3FAW_A 2DH3_B 2DH2_A 1CIU_A 1A47_A 3BMW_A 3BMV_A 2FH8_A 2FH6_A ....
Probab=73.17 E-value=6.8 Score=36.84 Aligned_cols=59 Identities=17% Similarity=0.299 Sum_probs=40.2
Q ss_pred HHHHHHHHHcCCCeEEecccccccccCCCC------CcCCh--hHHHHHHHHHHHHHHcCCeeEEEec
Q 017199 80 KEDIDLIAKLGFDAYRFSISWSRIFPDGLG------TKINM--EGITFYNNIIDALLQKGIQPYVTLY 139 (375)
Q Consensus 80 ~eDi~l~~~lG~~~~R~si~W~ri~P~~~g------~~~n~--~~l~~y~~~i~~l~~~gi~p~vtL~ 139 (375)
.+-|+-+++|||+++-++=-+..=. ...| ..+|. -..+=++++|++|+++||++|+++.
T Consensus 7 ~~kLdyl~~lGv~~I~l~Pi~~~~~-~~~gY~~~d~~~vd~~~Gt~~d~~~Lv~~~h~~gi~VilD~V 73 (316)
T PF00128_consen 7 IDKLDYLKDLGVNAIWLSPIFESPN-GYHGYDPSDYYAVDPRFGTMEDFKELVDAAHKRGIKVILDVV 73 (316)
T ss_dssp HHTHHHHHHHTESEEEESS-EESSS-STTTTSESEEEEESTTTBHHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred HHhhHHHHHcCCCceeccccccccc-ccccccceeeeccccccchhhhhhhhhhccccccceEEEeee
Confidence 4558899999999999875444110 1011 11222 1456789999999999999999874
No 56
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=72.10 E-value=21 Score=30.48 Aligned_cols=54 Identities=11% Similarity=0.236 Sum_probs=38.4
Q ss_pred HHHHHHHHcCCCeEEeccc------c--cccccCCCCCcCChhHHHHHHHHHHHHHHcCCeeEEEec
Q 017199 81 EDIDLIAKLGFDAYRFSIS------W--SRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLY 139 (375)
Q Consensus 81 eDi~l~~~lG~~~~R~si~------W--~ri~P~~~g~~~n~~~l~~y~~~i~~l~~~gi~p~vtL~ 139 (375)
+=++.++++|+|++-+... | +++.+.-.+ + + -+.+.++|++|+++||++++-+.
T Consensus 4 ~~~~~lk~~~v~si~i~a~~h~g~ayYPt~~~~~hp~--L--~-~Dllge~v~a~h~~Girv~ay~~ 65 (132)
T PF14871_consen 4 QFVDTLKEAHVNSITIFAKCHGGYAYYPTKVGPRHPG--L--K-RDLLGEQVEACHERGIRVPAYFD 65 (132)
T ss_pred HHHHHHHHhCCCEEEEEcccccEEEEccCCCCcCCCC--C--C-cCHHHHHHHHHHHCCCEEEEEEe
Confidence 3468899999999998332 2 333332112 2 2 47899999999999999998664
No 57
>TIGR03581 EF_0839 conserved hypothetical protein EF_0839/AHA_3917. Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.
Probab=69.14 E-value=18 Score=33.74 Aligned_cols=77 Identities=19% Similarity=0.358 Sum_probs=51.3
Q ss_pred CCcccCcHHHHHHHHHcCCCeEEe----------------------cccccccccCCCCCcCChhHHHHHHHHHHHHHHc
Q 017199 73 VDHYHRYKEDIDLIAKLGFDAYRF----------------------SISWSRIFPDGLGTKINMEGITFYNNIIDALLQK 130 (375)
Q Consensus 73 ~~~~~~y~eDi~l~~~lG~~~~R~----------------------si~W~ri~P~~~g~~~n~~~l~~y~~~i~~l~~~ 130 (375)
.+---.-+.-|+++++||.+++.| ++ | +||.| | +| ++.+.+++..+++.
T Consensus 131 ~~~iV~vetAiaml~dmG~~SiKffPM~Gl~~leE~~avA~aca~~g~-~--lEPTG-G--Id---l~Nf~~I~~i~lda 201 (236)
T TIGR03581 131 KEAIVPIETAIAMLKDMGGSSVKFFPMGGLKHLEEYAAVAKACAKHGF-Y--LEPTG-G--ID---LDNFEEIVQIALDA 201 (236)
T ss_pred CCceeeHHHHHHHHHHcCCCeeeEeecCCcccHHHHHHHHHHHHHcCC-c--cCCCC-C--cc---HHhHHHHHHHHHHc
Confidence 333445667799999999999874 34 3 68887 5 76 57889999999999
Q ss_pred CCeeEEEeccCCCchhHHhhcCCCCCHHHHHH
Q 017199 131 GIQPYVTLYHWDLPLHLHESMGGWLNKEIVKY 162 (375)
Q Consensus 131 gi~p~vtL~H~~~P~~l~~~~gg~~~~~~~~~ 162 (375)
|++-++ .|-- ..+-++-.|-+.++-+..
T Consensus 202 Gv~kvi--PHIY--ssiIDk~tG~TrpedV~~ 229 (236)
T TIGR03581 202 GVEKVI--PHVY--SSIIDKETGNTRVEDVKQ 229 (236)
T ss_pred CCCeec--cccc--eeccccccCCCCHHHHHH
Confidence 998665 2211 112223356666654443
No 58
>TIGR01210 conserved hypothetical protein TIGR01210. This family of exclusively archaeal proteins has no characterized close homologs. Several rounds of PSI-BLAST with a stringent cutoff of 1e-8 shows apparent similarity of the central region of this family to the central regions of the oxygen-independent coproporphyrinogen III dehydrogenase HemN and to other enzymes.
Probab=68.62 E-value=31 Score=33.76 Aligned_cols=108 Identities=16% Similarity=0.182 Sum_probs=69.7
Q ss_pred HHHHHHHHHcCCC-eEEeccc-c-ccccc-C-CCCCcCChhHHHHHHHHHHHHHHcCCeeEEEeccCCCchhHHhhcCCC
Q 017199 80 KEDIDLIAKLGFD-AYRFSIS-W-SRIFP-D-GLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLPLHLHESMGGW 154 (375)
Q Consensus 80 ~eDi~l~~~lG~~-~~R~si~-W-~ri~P-~-~~g~~~n~~~l~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~gg~ 154 (375)
++.+++|+++|++ .+=++++ - .++.- . +.| .+ .+-+.+.++.++++||.+.+.+. +.+|. .
T Consensus 117 ~e~L~~l~~aG~~~~v~iG~ES~~d~~L~~~inKg--~t---~~~~~~ai~~~~~~Gi~v~~~~i-~G~P~--------~ 182 (313)
T TIGR01210 117 EEKLEELRKIGVNVEVAVGLETANDRIREKSINKG--ST---FEDFIRAAELARKYGAGVKAYLL-FKPPF--------L 182 (313)
T ss_pred HHHHHHHHHcCCCEEEEEecCcCCHHHHHHhhCCC--CC---HHHHHHHHHHHHHcCCcEEEEEE-ecCCC--------C
Confidence 7889999999998 4666662 1 22221 1 112 22 35688999999999999777765 34452 1
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCCcceEEeccccchhhcccccccccCC
Q 017199 155 LNKEIVKYFEIYADTCFASFGDRVKNWITINEPLQTAVNGYCTGIFAP 202 (375)
Q Consensus 155 ~~~~~~~~f~~ya~~~~~~~~d~V~~w~t~NEp~~~~~~gy~~g~~~p 202 (375)
.-.++++.+.+.++.+.. +++.|....+.=+|+.....-|..|.|.|
T Consensus 183 se~ea~ed~~~ti~~~~~-l~~~vs~~~l~v~~gT~l~~~~~~G~~~p 229 (313)
T TIGR01210 183 SEKEAIADMISSIRKCIP-VTDTVSINPTNVQKGTLVEFLWNRGLYRP 229 (313)
T ss_pred ChhhhHHHHHHHHHHHHh-cCCcEEEECCEEeCCCHHHHHHHcCCCCC
Confidence 223567777777777765 45778777766677764444455677755
No 59
>PF05089 NAGLU: Alpha-N-acetylglucosaminidase (NAGLU) tim-barrel domain; InterPro: IPR024733 Alpha-N-acetylglucosaminidase is a lysosomal enzyme that is required for the stepwise degradation of heparan sulphate []. Mutations on the alpha-N-acetylglucosaminidase gene can lead to mucopolysaccharidosis type IIIB (MPS IIIB; or Sanfilippo syndrome type B), characterised by neurological dysfunction but relatively mild somatic manifestations []. Alpha-N-acetylglucosaminidase is composed of three domains. This entry represents the central domain, which has a tim barrel fold [].; PDB: 4A4A_A 2VC9_A 2VCC_A 2VCB_A 2VCA_A.
Probab=68.06 E-value=31 Score=34.17 Aligned_cols=110 Identities=18% Similarity=0.317 Sum_probs=59.4
Q ss_pred ccCcHHHHHHHHHcCCCeEEec------------------------------ccccccccCC--CCCcCC----hhHHHH
Q 017199 76 YHRYKEDIDLIAKLGFDAYRFS------------------------------ISWSRIFPDG--LGTKIN----MEGITF 119 (375)
Q Consensus 76 ~~~y~eDi~l~~~lG~~~~R~s------------------------------i~W~ri~P~~--~g~~~n----~~~l~~ 119 (375)
|.+|++.|+.|+--|||..=-- +.|.|..--. .| ++. .+-.+.
T Consensus 18 W~rWEreIDWMALnGiNl~La~~GqEavw~~v~~~~G~t~~ei~~ff~GPA~laW~rMgNl~gwgG-PLp~~w~~~q~~L 96 (333)
T PF05089_consen 18 WERWEREIDWMALNGINLPLAIVGQEAVWQRVLRELGLTDEEIREFFTGPAFLAWWRMGNLQGWGG-PLPQSWIDQQAEL 96 (333)
T ss_dssp HHHHHHHHHHHHHTT--EEE--TTHHHHHHHHHGGGT--HHHHHHHS--TT-HHHHHTTS--STT-----TTHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCchhhhhhHHHHHHHHHHHHcCCCHHHHHHHcCCHHHHHHHHhCCcccCCC-CCCHHHHHHHHHH
Confidence 5689999999999999954311 1343332110 02 222 233556
Q ss_pred HHHHHHHHHHcCCeeEEEeccCCCchhHHhhc--------CCCC--------CHHHHHHHHHHHHH----HHHHcCCCcc
Q 017199 120 YNNIIDALLQKGIQPYVTLYHWDLPLHLHESM--------GGWL--------NKEIVKYFEIYADT----CFASFGDRVK 179 (375)
Q Consensus 120 y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~--------gg~~--------~~~~~~~f~~ya~~----~~~~~~d~V~ 179 (375)
=+++++++++.||+|++=-+-.-+|.-|.+++ +.|. .| .-..|.+.++. -.+.|| .-.
T Consensus 97 q~kIl~RmreLGm~PVLPaF~G~VP~~~~~~~P~a~i~~~~~W~~f~~~~~L~P-~dplF~~i~~~F~~~q~~~yG-~~~ 174 (333)
T PF05089_consen 97 QKKILDRMRELGMTPVLPAFAGHVPRAFKRKYPNANITRQGNWNGFCRPYFLDP-TDPLFAEIAKLFYEEQIKLYG-TDH 174 (333)
T ss_dssp HHHHHHHHHHHT-EEEEE--S-EE-TTHHHHSTT--EE---EETTEE--EEE-S-S--HHHHHHHHHHHHHHHHH----S
T ss_pred HHHHHHHHHHcCCcccCCCcCCCCChHHHhcCCCCEEeeCCCcCCCCCCceeCC-CCchHHHHHHHHHHHHHHhcC-CCc
Confidence 68999999999999999888777898888876 2232 22 23566666655 446687 344
Q ss_pred eEE--eccccc
Q 017199 180 NWI--TINEPL 188 (375)
Q Consensus 180 ~w~--t~NEp~ 188 (375)
++. +|||-.
T Consensus 175 ~Y~~D~FnE~~ 185 (333)
T PF05089_consen 175 IYAADPFNEGG 185 (333)
T ss_dssp EEE--TTTTS-
T ss_pred eeCCCccCCCC
Confidence 444 889854
No 60
>PRK12313 glycogen branching enzyme; Provisional
Probab=67.98 E-value=23 Score=38.23 Aligned_cols=93 Identities=16% Similarity=0.249 Sum_probs=59.2
Q ss_pred ccCcHHH-HHHHHHcCCCeEEeccc--------c-------cccccCCCCCcCChhHHHHHHHHHHHHHHcCCeeEEEec
Q 017199 76 YHRYKED-IDLIAKLGFDAYRFSIS--------W-------SRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLY 139 (375)
Q Consensus 76 ~~~y~eD-i~l~~~lG~~~~R~si~--------W-------~ri~P~~~g~~~n~~~l~~y~~~i~~l~~~gi~p~vtL~ 139 (375)
|.-..+. |+-+++||++++=+.=- | -.|.|.- | . .+=++++|++|+++||++|+.+.
T Consensus 169 ~~~~~~~ll~yl~~LGv~~i~L~Pi~~~~~~~~~GY~~~~y~~i~~~~-G-t-----~~d~k~lv~~~H~~Gi~VilD~V 241 (633)
T PRK12313 169 YRELADELIPYVKEMGYTHVEFMPLMEHPLDGSWGYQLTGYFAPTSRY-G-T-----PEDFMYLVDALHQNGIGVILDWV 241 (633)
T ss_pred HHHHHHHHHHHHHHcCCCEEEeCchhcCCCCCCCCCCCcCcCcCCCCC-C-C-----HHHHHHHHHHHHHCCCEEEEEEC
Confidence 3444556 48999999999875432 2 1222221 3 2 34589999999999999999854
Q ss_pred --cCCCch----hHH--------h---h-cCC-------CCCHHHHHHHHHHHHHHHHHcC
Q 017199 140 --HWDLPL----HLH--------E---S-MGG-------WLNKEIVKYFEIYADTCFASFG 175 (375)
Q Consensus 140 --H~~~P~----~l~--------~---~-~gg-------~~~~~~~~~f~~ya~~~~~~~~ 175 (375)
|..... ++. + . +.+ +.++++.+.+.+-++.-++.|+
T Consensus 242 ~nH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~n~~~~~vr~~l~~~~~~W~~~~~ 302 (633)
T PRK12313 242 PGHFPKDDDGLAYFDGTPLYEYQDPRRAENPDWGALNFDLGKNEVRSFLISSALFWLDEYH 302 (633)
T ss_pred CCCCCCCcccccccCCCcceeecCCCCCcCCCCCCcccCCCCHHHHHHHHHHHHHHHHHhC
Confidence 543111 110 0 0 012 3468888888888888888876
No 61
>PRK05402 glycogen branching enzyme; Provisional
Probab=67.62 E-value=27 Score=38.30 Aligned_cols=90 Identities=17% Similarity=0.233 Sum_probs=57.4
Q ss_pred cHHHH-HHHHHcCCCeEEeccc--------c-------cccccCCCCCcCChhHHHHHHHHHHHHHHcCCeeEEEec--c
Q 017199 79 YKEDI-DLIAKLGFDAYRFSIS--------W-------SRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLY--H 140 (375)
Q Consensus 79 y~eDi-~l~~~lG~~~~R~si~--------W-------~ri~P~~~g~~~n~~~l~~y~~~i~~l~~~gi~p~vtL~--H 140 (375)
..+.+ +-+++||++++=+.=- | -.|.|.- | ..+=++++|++|+++||++|+.+. |
T Consensus 267 i~~~l~~ylk~LGv~~i~L~Pi~e~~~~~~~GY~~~~y~ai~~~~-G------t~~dfk~lV~~~H~~Gi~VilD~V~NH 339 (726)
T PRK05402 267 LADQLIPYVKEMGFTHVELLPIAEHPFDGSWGYQPTGYYAPTSRF-G------TPDDFRYFVDACHQAGIGVILDWVPAH 339 (726)
T ss_pred HHHHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCCCcCccc-C------CHHHHHHHHHHHHHCCCEEEEEECCCC
Confidence 34453 7789999999865432 2 1222221 3 234589999999999999999853 5
Q ss_pred CCCc-----------hhHHh-----hcC-------CCCCHHHHHHHHHHHHHHHHHcC
Q 017199 141 WDLP-----------LHLHE-----SMG-------GWLNKEIVKYFEIYADTCFASFG 175 (375)
Q Consensus 141 ~~~P-----------~~l~~-----~~g-------g~~~~~~~~~f~~ya~~~~~~~~ 175 (375)
+... .+... .+. .+.++++.+.+.+-++.-+++|+
T Consensus 340 ~~~~~~~~~~~~~~~~y~~~~~~~~~~~~w~~~~~n~~~~~v~~~l~~~~~~W~~e~~ 397 (726)
T PRK05402 340 FPKDAHGLARFDGTALYEHADPREGEHPDWGTLIFNYGRNEVRNFLVANALYWLEEFH 397 (726)
T ss_pred CCCCccchhccCCCcceeccCCcCCccCCCCCccccCCCHHHHHHHHHHHHHHHHHhC
Confidence 4221 11000 011 23468888888888888888876
No 62
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=67.47 E-value=19 Score=34.69 Aligned_cols=83 Identities=17% Similarity=0.176 Sum_probs=60.3
Q ss_pred CcHHHHHHHHHcCCCeEEecccccccccCC-CCCcCChhHHHHHHHHHHHHHHcCCeeEEEeccCCCchhHHhhcCCCCC
Q 017199 78 RYKEDIDLIAKLGFDAYRFSISWSRIFPDG-LGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLPLHLHESMGGWLN 156 (375)
Q Consensus 78 ~y~eDi~l~~~lG~~~~R~si~W~ri~P~~-~g~~~n~~~l~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~gg~~~ 156 (375)
+-+.|++++.+.|++.+++.++=|...-.. -+ .--++.++...++++.+++.|+++.+++-+|..|.
T Consensus 75 ~~~~~~~~A~~~g~~~i~i~~~~S~~h~~~~~~-~t~~e~l~~~~~~i~~a~~~G~~v~~~~~d~~~~~----------- 142 (280)
T cd07945 75 DGDKSVDWIKSAGAKVLNLLTKGSLKHCTEQLR-KTPEEHFADIREVIEYAIKNGIEVNIYLEDWSNGM----------- 142 (280)
T ss_pred CcHHHHHHHHHCCCCEEEEEEeCCHHHHHHHHC-cCHHHHHHHHHHHHHHHHhCCCEEEEEEEeCCCCC-----------
Confidence 346799999999999999999655444332 12 22356889999999999999999999998766552
Q ss_pred HHHHHHHHHHHHHHHH
Q 017199 157 KEIVKYFEIYADTCFA 172 (375)
Q Consensus 157 ~~~~~~f~~ya~~~~~ 172 (375)
+...+.+.++++.+.+
T Consensus 143 r~~~~~~~~~~~~~~~ 158 (280)
T cd07945 143 RDSPDYVFQLVDFLSD 158 (280)
T ss_pred cCCHHHHHHHHHHHHH
Confidence 1124566667766654
No 63
>PLN02361 alpha-amylase
Probab=67.14 E-value=12 Score=38.19 Aligned_cols=65 Identities=14% Similarity=0.279 Sum_probs=45.5
Q ss_pred CcccCcHHHHHHHHHcCCCeEEecccccccccCCCC----CcCChh--HHHHHHHHHHHHHHcCCeeEEEe
Q 017199 74 DHYHRYKEDIDLIAKLGFDAYRFSISWSRIFPDGLG----TKINME--GITFYNNIIDALLQKGIQPYVTL 138 (375)
Q Consensus 74 ~~~~~y~eDi~l~~~lG~~~~R~si~W~ri~P~~~g----~~~n~~--~l~~y~~~i~~l~~~gi~p~vtL 138 (375)
.+|....+-++-+++||++++=++=...-..+.|-. -.+|.. ..+=++++|++|+++||++++.+
T Consensus 26 ~~w~~i~~kl~~l~~lG~t~iwl~P~~~~~~~~GY~~~d~y~~~~~~Gt~~el~~li~~~h~~gi~vi~D~ 96 (401)
T PLN02361 26 DWWRNLEGKVPDLAKSGFTSAWLPPPSQSLAPEGYLPQNLYSLNSAYGSEHLLKSLLRKMKQYNVRAMADI 96 (401)
T ss_pred HHHHHHHHHHHHHHHcCCCEEEeCCCCcCCCCCCCCcccccccCcccCCHHHHHHHHHHHHHcCCEEEEEE
Confidence 478889999999999999999876644333222200 011111 23458999999999999999964
No 64
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=66.94 E-value=22 Score=37.01 Aligned_cols=59 Identities=24% Similarity=0.350 Sum_probs=44.8
Q ss_pred CcccCcHHH-----HHHHHHcCCCeEEecccccccccCCCCCcCChhHHHHHHHHHHHHHHcCCeeEEEeccCCCchh
Q 017199 74 DHYHRYKED-----IDLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLPLH 146 (375)
Q Consensus 74 ~~~~~y~eD-----i~l~~~lG~~~~R~si~W~ri~P~~~g~~~n~~~l~~y~~~i~~l~~~gi~p~vtL~H~~~P~~ 146 (375)
--|..|.+| +++.++.|++.+|..-. +|. ++-....|+.+++.|....+++.+=+.|..
T Consensus 97 vgy~~ypddvv~~fv~~a~~~Gidi~Rifd~------------lnd--~~n~~~ai~~ak~~G~~~~~~i~yt~sp~~ 160 (468)
T PRK12581 97 LGYRHYADDIVDKFISLSAQNGIDVFRIFDA------------LND--PRNIQQALRAVKKTGKEAQLCIAYTTSPVH 160 (468)
T ss_pred cCccCCcchHHHHHHHHHHHCCCCEEEEccc------------CCC--HHHHHHHHHHHHHcCCEEEEEEEEEeCCcC
Confidence 357888899 89999999999997643 332 455677888888888888888887666633
No 65
>cd06592 GH31_glucosidase_KIAA1161 KIAA1161 is an uncharacterized Homo sapiens protein with a glycosyl hydrolase family 31 (GH31) domain that is homologous to the Escherichia coli YihQ glucosidase. Orthologs of KIA1161 are found in eukaryotes and prokaryotes. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=66.38 E-value=36 Score=33.01 Aligned_cols=105 Identities=17% Similarity=0.167 Sum_probs=70.6
Q ss_pred HHHHHHHHHcCC--CeEEecccccccccCCCCCcCChhHHHHHHHHHHHHHHcCCeeEEEeccCCC---chhHH------
Q 017199 80 KEDIDLIAKLGF--DAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDL---PLHLH------ 148 (375)
Q Consensus 80 ~eDi~l~~~lG~--~~~R~si~W~ri~P~~~g~~~n~~~l~~y~~~i~~l~~~gi~p~vtL~H~~~---P~~l~------ 148 (375)
.+-++.+++.|+ +++=+.+.|..-. ++= .+|.+.+---..++++|+++|+++++.+.=+-. +..-+
T Consensus 33 ~~~~~~~~~~~iP~d~i~iD~~w~~~~--g~f-~~d~~~FPdp~~mi~~l~~~G~k~~l~i~P~i~~~s~~~~e~~~~g~ 109 (303)
T cd06592 33 LNYAQEIIDNGFPNGQIEIDDNWETCY--GDF-DFDPTKFPDPKGMIDQLHDLGFRVTLWVHPFINTDSENFREAVEKGY 109 (303)
T ss_pred HHHHHHHHHcCCCCCeEEeCCCccccC--Ccc-ccChhhCCCHHHHHHHHHHCCCeEEEEECCeeCCCCHHHHhhhhCCe
Confidence 455788888885 4777777785432 212 455555555789999999999999887653211 11111
Q ss_pred ---hhcC----------C------CCCHHHHHHHHHHHHHHHHHcCCCcceEEeccccc
Q 017199 149 ---ESMG----------G------WLNKEIVKYFEIYADTCFASFGDRVKNWITINEPL 188 (375)
Q Consensus 149 ---~~~g----------g------~~~~~~~~~f~~ya~~~~~~~~d~V~~w~t~NEp~ 188 (375)
..-| | ++||+..+.|.+..+.+...+|= --.|+=+|||.
T Consensus 110 ~vk~~~g~~~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~~~~~Gv-dg~w~D~~E~~ 167 (303)
T cd06592 110 LVSEPSGDIPALTRWWNGTAAVLDFTNPEAVDWFLSRLKSLQEKYGI-DSFKFDAGEAS 167 (303)
T ss_pred EEECCCCCCCcccceecCCcceEeCCCHHHHHHHHHHHHHHHHHhCC-cEEEeCCCCcc
Confidence 0001 1 67899999999998888877753 24588999997
No 66
>PLN00196 alpha-amylase; Provisional
Probab=66.29 E-value=11 Score=38.83 Aligned_cols=64 Identities=17% Similarity=0.225 Sum_probs=44.2
Q ss_pred cccCcHHHHHHHHHcCCCeEEecccccccccCCCC----CcCCh---hHHHHHHHHHHHHHHcCCeeEEEe
Q 017199 75 HYHRYKEDIDLIAKLGFDAYRFSISWSRIFPDGLG----TKINM---EGITFYNNIIDALLQKGIQPYVTL 138 (375)
Q Consensus 75 ~~~~y~eDi~l~~~lG~~~~R~si~W~ri~P~~~g----~~~n~---~~l~~y~~~i~~l~~~gi~p~vtL 138 (375)
+|....+.++-+++|||+++=++=......+.|-. -.+|. -.-+=++++|++++++||++|+.+
T Consensus 42 ~~~~i~~kldyL~~LGvtaIWL~P~~~s~s~hGY~~~D~y~ld~~~fGt~~elk~Lv~~aH~~GIkVilDv 112 (428)
T PLN00196 42 WYNFLMGKVDDIAAAGITHVWLPPPSHSVSEQGYMPGRLYDLDASKYGNEAQLKSLIEAFHGKGVQVIADI 112 (428)
T ss_pred CHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCccccCCCCcccCCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 56777889999999999999888654433222200 01221 012458999999999999999974
No 67
>cd06543 GH18_PF-ChiA-like PF-ChiA is an uncharacterized chitinase found in the hyperthermophilic archaeon Pyrococcus furiosus with a glycosyl hydrolase family 18 (GH18) catalytic domain as well as a cellulose-binding domain. Members of this domain family are found not only in archaea but also in eukaryotes and prokaryotes. PF-ChiA exhibits hydrolytic activity toward both colloidal and crystalline (beta/alpha) chitins at high temperature.
Probab=66.24 E-value=29 Score=33.79 Aligned_cols=89 Identities=12% Similarity=0.029 Sum_probs=53.3
Q ss_pred HHHHHcCCCeEEeccc--ccccccCCCCCcCChhHHHHHHHHHHHHHHcCCeeEEEeccCCCchhHHhhcCCCCCHHHHH
Q 017199 84 DLIAKLGFDAYRFSIS--WSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLPLHLHESMGGWLNKEIVK 161 (375)
Q Consensus 84 ~l~~~lG~~~~R~si~--W~ri~P~~~g~~~n~~~l~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~gg~~~~~~~~ 161 (375)
+.+++.|++++-+++- -..-.|.-.| .............|..|+++|++++|.+-.+.-... -.+...++
T Consensus 19 ~~~~~~g~~~v~lAFi~~~~~~~~~w~g-~~~~~~~~~~~~~i~~lk~~G~kViiS~GG~~g~~~-------~~~~~~~~ 90 (294)
T cd06543 19 TYAAATGVKAFTLAFIVASGGCKPAWGG-SYPLDQGGWIKSDIAALRAAGGDVIVSFGGASGTPL-------ATSCTSAD 90 (294)
T ss_pred HHHHHcCCCEEEEEEEEcCCCCcccCCC-CCCcccchhHHHHHHHHHHcCCeEEEEecCCCCCcc-------ccCcccHH
Confidence 5678899998887753 1222222111 111011244577899999999999998843321110 01345678
Q ss_pred HHHHHHHHHHHHcCC-Ccce
Q 017199 162 YFEIYADTCFASFGD-RVKN 180 (375)
Q Consensus 162 ~f~~ya~~~~~~~~d-~V~~ 180 (375)
.|++....+.++|+= .|++
T Consensus 91 ~~~~a~~~~i~~y~~dgiDf 110 (294)
T cd06543 91 QLAAAYQKVIDAYGLTHLDF 110 (294)
T ss_pred HHHHHHHHHHHHhCCCeEEE
Confidence 888888888888873 3443
No 68
>PRK07379 coproporphyrinogen III oxidase; Provisional
Probab=66.02 E-value=24 Score=35.73 Aligned_cols=106 Identities=15% Similarity=0.170 Sum_probs=63.8
Q ss_pred cHHHHHHHHHcCCCeEEeccc-c-cccccCCCCCcCChhHHHHHHHHHHHHHHcCCe-eEEEeccCCCchhHHhhcCCCC
Q 017199 79 YKEDIDLIAKLGFDAYRFSIS-W-SRIFPDGLGTKINMEGITFYNNIIDALLQKGIQ-PYVTLYHWDLPLHLHESMGGWL 155 (375)
Q Consensus 79 y~eDi~l~~~lG~~~~R~si~-W-~ri~P~~~g~~~n~~~l~~y~~~i~~l~~~gi~-p~vtL~H~~~P~~l~~~~gg~~ 155 (375)
-++.++.|+++|++.+-+++. - .++...- |...+ .+-..+.++.+++.|+. +-++|. +++|. .
T Consensus 114 t~e~l~~l~~~GvnrislGvQS~~d~~L~~l-~R~~~---~~~~~~ai~~l~~~G~~~v~~dlI-~GlPg---------q 179 (400)
T PRK07379 114 DLEQLQGYRSLGVNRVSLGVQAFQDELLALC-GRSHR---VKDIFAAVDLIHQAGIENFSLDLI-SGLPH---------Q 179 (400)
T ss_pred CHHHHHHHHHCCCCEEEEEcccCCHHHHHHh-CCCCC---HHHHHHHHHHHHHcCCCeEEEEee-cCCCC---------C
Confidence 468899999999996666662 2 1222211 21222 24567889999999998 567775 46662 2
Q ss_pred CHHHHHHHHHHHHHHHHHcCCCcceEEeccccchhhcccccccccC
Q 017199 156 NKEIVKYFEIYADTCFASFGDRVKNWITINEPLQTAVNGYCTGIFA 201 (375)
Q Consensus 156 ~~~~~~~f~~ya~~~~~~~~d~V~~w~t~NEp~~~~~~gy~~g~~~ 201 (375)
+.+.+.+=++.+.+.=-+.|..+...-||+.....-+..|.+.
T Consensus 180 ---t~e~~~~tl~~~~~l~p~~is~y~L~~~pgT~l~~~~~~g~~~ 222 (400)
T PRK07379 180 ---TLEDWQASLEAAIALNPTHLSCYDLVLEPGTAFGKQYQPGKAP 222 (400)
T ss_pred ---CHHHHHHHHHHHHcCCCCEEEEecceecCCchhHHHhhcCCCC
Confidence 2334444444444333356777877788886555445555544
No 69
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=64.84 E-value=14 Score=35.35 Aligned_cols=60 Identities=20% Similarity=0.203 Sum_probs=46.2
Q ss_pred cHHHHHHHHHcCCCeEEecccccccccCC-CCCcCChhHHHHHHHHHHHHHHcCCeeEEEec
Q 017199 79 YKEDIDLIAKLGFDAYRFSISWSRIFPDG-LGTKINMEGITFYNNIIDALLQKGIQPYVTLY 139 (375)
Q Consensus 79 y~eDi~l~~~lG~~~~R~si~W~ri~P~~-~g~~~n~~~l~~y~~~i~~l~~~gi~p~vtL~ 139 (375)
-.+|++...+.|++.+|+.++=|...-.. .+ .=-++.++...+++..++++|+++.+++-
T Consensus 73 ~~~di~~a~~~g~~~i~i~~~~S~~~~~~~~~-~~~~e~~~~~~~~i~~a~~~G~~v~~~~e 133 (262)
T cd07948 73 HMDDARIAVETGVDGVDLVFGTSPFLREASHG-KSITEIIESAVEVIEFVKSKGIEVRFSSE 133 (262)
T ss_pred CHHHHHHHHHcCcCEEEEEEecCHHHHHHHhC-CCHHHHHHHHHHHHHHHHHCCCeEEEEEE
Confidence 36799999999999999988654433221 12 12246789999999999999999999884
No 70
>TIGR02403 trehalose_treC alpha,alpha-phosphotrehalase. Trehalose is a glucose disaccharide that serves in many biological systems as a compatible solute for protection against hyperosmotic and thermal stress. This family describes trehalose-6-phosphate hydrolase, product of the treC (or treA) gene, which is often found together with a trehalose uptake transporter and a trehalose operon repressor.
Probab=63.77 E-value=15 Score=38.81 Aligned_cols=59 Identities=17% Similarity=0.282 Sum_probs=41.9
Q ss_pred CcccCcHHHHHHHHHcCCCeEEeccccc--------------ccccCCCCCcCChhHHHHHHHHHHHHHHcCCeeEEEec
Q 017199 74 DHYHRYKEDIDLIAKLGFDAYRFSISWS--------------RIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLY 139 (375)
Q Consensus 74 ~~~~~y~eDi~l~~~lG~~~~R~si~W~--------------ri~P~~~g~~~n~~~l~~y~~~i~~l~~~gi~p~vtL~ 139 (375)
..+.-..+-++-+++||++++=++=-.. +|.|.- | ..+-++++|++|+++||++|+.+.
T Consensus 24 G~~~gi~~~l~yl~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~id~~~-G------t~~~~~~lv~~ah~~gi~vilD~v 96 (543)
T TIGR02403 24 GDLRGIIEKLDYLKKLGVDYIWLNPFYVSPQKDNGYDVSDYYAINPLF-G------TMADFEELVSEAKKRNIKIMLDMV 96 (543)
T ss_pred cCHHHHHHhHHHHHHcCCCEEEECCcccCCCCCCCCCccccCccCccc-C------CHHHHHHHHHHHHHCCCEEEEEEC
Confidence 3455566778999999999986654322 222221 2 345689999999999999999854
No 71
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=62.74 E-value=32 Score=32.55 Aligned_cols=59 Identities=25% Similarity=0.246 Sum_probs=46.5
Q ss_pred cHHHHHHHHHcCCCeEEecccccccccCC-CCCcCChhHHHHHHHHHHHHHHcCCeeEEEe
Q 017199 79 YKEDIDLIAKLGFDAYRFSISWSRIFPDG-LGTKINMEGITFYNNIIDALLQKGIQPYVTL 138 (375)
Q Consensus 79 y~eDi~l~~~lG~~~~R~si~W~ri~P~~-~g~~~n~~~l~~y~~~i~~l~~~gi~p~vtL 138 (375)
-.+|++...+.|++.+|+.++.+.+.-.. -+ .-.++.++...++++.+++.|+++.+++
T Consensus 71 ~~~~v~~a~~~g~~~i~i~~~~s~~~~~~~~~-~~~~~~~~~~~~~i~~a~~~G~~v~~~~ 130 (259)
T cd07939 71 VKEDIEAALRCGVTAVHISIPVSDIHLAHKLG-KDRAWVLDQLRRLVGRAKDRGLFVSVGA 130 (259)
T ss_pred CHHHHHHHHhCCcCEEEEEEecCHHHHHHHhC-CCHHHHHHHHHHHHHHHHHCCCeEEEee
Confidence 37899999999999999999887664332 12 2234678899999999999999887665
No 72
>COG1523 PulA Type II secretory pathway, pullulanase PulA and related glycosidases [Carbohydrate transport and metabolism]
Probab=61.77 E-value=19 Score=39.26 Aligned_cols=57 Identities=23% Similarity=0.390 Sum_probs=40.1
Q ss_pred HHHHHHcCCCeEE----ecccccccccCC-C----C--------------CcCC-hhHHHHHHHHHHHHHHcCCeeEEEe
Q 017199 83 IDLIAKLGFDAYR----FSISWSRIFPDG-L----G--------------TKIN-MEGITFYNNIIDALLQKGIQPYVTL 138 (375)
Q Consensus 83 i~l~~~lG~~~~R----~si~W~ri~P~~-~----g--------------~~~n-~~~l~~y~~~i~~l~~~gi~p~vtL 138 (375)
|+-+|+|||+++. +++...+...+. . | +..+ ...++=+++||++|.++||++|+.+
T Consensus 206 i~yLk~LGvtaVeLLPV~~~~~~~~l~~~gl~n~WGYdP~~fFAp~~~Yss~p~p~~~i~EfK~mV~~lHkaGI~VILDV 285 (697)
T COG1523 206 IDYLKDLGVTAVELLPVFDFYDEPHLDKSGLNNNWGYDPLNFFAPEGRYASNPEPATRIKEFKDMVKALHKAGIEVILDV 285 (697)
T ss_pred HHHHHHhCCceEEEecceEEeccccccccccccccCCCcccccCCCccccCCCCcchHHHHHHHHHHHHHHcCCEEEEEE
Confidence 9999999999998 344444444321 0 1 1111 1247779999999999999999975
Q ss_pred c
Q 017199 139 Y 139 (375)
Q Consensus 139 ~ 139 (375)
.
T Consensus 286 V 286 (697)
T COG1523 286 V 286 (697)
T ss_pred e
Confidence 4
No 73
>PRK06294 coproporphyrinogen III oxidase; Provisional
Probab=61.39 E-value=34 Score=34.25 Aligned_cols=95 Identities=12% Similarity=0.119 Sum_probs=60.4
Q ss_pred cHHHHHHHHHcCCCeEEecccccccccCC---CCCcCChhHHHHHHHHHHHHHHcCCe-eEEEeccCCCchhHHhhcCCC
Q 017199 79 YKEDIDLIAKLGFDAYRFSISWSRIFPDG---LGTKINMEGITFYNNIIDALLQKGIQ-PYVTLYHWDLPLHLHESMGGW 154 (375)
Q Consensus 79 y~eDi~l~~~lG~~~~R~si~W~ri~P~~---~g~~~n~~~l~~y~~~i~~l~~~gi~-p~vtL~H~~~P~~l~~~~gg~ 154 (375)
-++.++.|+++|++.+-+++. -+-++- -|...+ .+-..+.|+.+++.|+. +-++|. +++|.
T Consensus 102 ~~~~l~~l~~~G~nrislGvQ--S~~~~~L~~l~R~~~---~~~~~~ai~~~~~~g~~~v~~Dli-~GlPg--------- 166 (370)
T PRK06294 102 SESYIRALALTGINRISIGVQ--TFDDPLLKLLGRTHS---SSKAIDAVQECSEHGFSNLSIDLI-YGLPT--------- 166 (370)
T ss_pred CHHHHHHHHHCCCCEEEEccc--cCCHHHHHHcCCCCC---HHHHHHHHHHHHHcCCCeEEEEee-cCCCC---------
Confidence 368899999999996655552 222211 120122 34567788999999997 456664 45552
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCCcceEEeccccchhh
Q 017199 155 LNKEIVKYFEIYADTCFASFGDRVKNWITINEPLQTA 191 (375)
Q Consensus 155 ~~~~~~~~f~~ya~~~~~~~~d~V~~w~t~NEp~~~~ 191 (375)
++.+.|.+-.+.+.+.=-+.|..+...-||+...
T Consensus 167 ---qt~~~~~~~l~~~~~l~~~~is~y~l~~~~gT~l 200 (370)
T PRK06294 167 ---QSLSDFIVDLHQAITLPITHISLYNLTIDPHTSF 200 (370)
T ss_pred ---CCHHHHHHHHHHHHccCCCeEEEeeeEecCCChH
Confidence 2455666666666654336788888888888543
No 74
>PRK05628 coproporphyrinogen III oxidase; Validated
Probab=60.63 E-value=39 Score=33.74 Aligned_cols=106 Identities=11% Similarity=0.036 Sum_probs=60.9
Q ss_pred cHHHHHHHHHcCCCeEEeccc-cc-ccccCCCCCcCChhHHHHHHHHHHHHHHcCCe-eEEEeccCCCchhHHhhcCCCC
Q 017199 79 YKEDIDLIAKLGFDAYRFSIS-WS-RIFPDGLGTKINMEGITFYNNIIDALLQKGIQ-PYVTLYHWDLPLHLHESMGGWL 155 (375)
Q Consensus 79 y~eDi~l~~~lG~~~~R~si~-W~-ri~P~~~g~~~n~~~l~~y~~~i~~l~~~gi~-p~vtL~H~~~P~~l~~~~gg~~ 155 (375)
-++.+++|+++|++.+-+++. -+ ++...- |...+ .+...+.++.+++.|+. +.++|. +++|. .
T Consensus 107 ~~e~l~~l~~~G~~rvslGvQS~~~~~L~~l-~R~~s---~~~~~~a~~~l~~~g~~~v~~dli-~GlPg---------q 172 (375)
T PRK05628 107 SPEFFAALRAAGFTRVSLGMQSAAPHVLAVL-DRTHT---PGRAVAAAREARAAGFEHVNLDLI-YGTPG---------E 172 (375)
T ss_pred CHHHHHHHHHcCCCEEEEecccCCHHHHHHc-CCCCC---HHHHHHHHHHHHHcCCCcEEEEEe-ccCCC---------C
Confidence 468899999999996666662 22 222111 20222 35677889999999998 666664 35552 2
Q ss_pred CHHHHHHHHHHHHHHHHHcCCCcceEEeccccchhhcccccccccC
Q 017199 156 NKEIVKYFEIYADTCFASFGDRVKNWITINEPLQTAVNGYCTGIFA 201 (375)
Q Consensus 156 ~~~~~~~f~~ya~~~~~~~~d~V~~w~t~NEp~~~~~~gy~~g~~~ 201 (375)
+.+.|.+=.+.+.+.=-+.|..+...-||+.....-+..|.++
T Consensus 173 ---t~~~~~~tl~~~~~l~~~~i~~y~l~~~~gT~l~~~~~~g~~~ 215 (375)
T PRK05628 173 ---SDDDWRASLDAALEAGVDHVSAYALIVEDGTALARRVRRGELP 215 (375)
T ss_pred ---CHHHHHHHHHHHHhcCCCEEEeeeeecCCCChHHHHhhcCCCC
Confidence 2444544444444322255666655557776544334344443
No 75
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=60.59 E-value=28 Score=34.78 Aligned_cols=61 Identities=21% Similarity=0.118 Sum_probs=48.1
Q ss_pred CcHHHHHHHHHcCCCeEEecccccccccCC-CCCcCChhHHHHHHHHHHHHHHcCCeeEEEec
Q 017199 78 RYKEDIDLIAKLGFDAYRFSISWSRIFPDG-LGTKINMEGITFYNNIIDALLQKGIQPYVTLY 139 (375)
Q Consensus 78 ~y~eDi~l~~~lG~~~~R~si~W~ri~P~~-~g~~~n~~~l~~y~~~i~~l~~~gi~p~vtL~ 139 (375)
-.++|++.+.+.|++.+|+.++-|.+.-.. -+ .-..+.++...+.++.+++.|+++.+++-
T Consensus 72 ~~~~di~~a~~~g~~~i~i~~~~Sd~~~~~~~~-~~~~~~~~~~~~~i~~ak~~G~~v~~~~e 133 (363)
T TIGR02090 72 ALKKDIDKAIDCGVDSIHTFIATSPIHLKYKLK-KSRDEVLEKAVEAVEYAKEHGLIVEFSAE 133 (363)
T ss_pred cCHHHHHHHHHcCcCEEEEEEcCCHHHHHHHhC-CCHHHHHHHHHHHHHHHHHcCCEEEEEEe
Confidence 458999999999999999998877665432 12 22345788899999999999999988874
No 76
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=60.38 E-value=31 Score=32.20 Aligned_cols=62 Identities=21% Similarity=0.140 Sum_probs=45.9
Q ss_pred HHHHHHHHHcCCCeEEecccccccccCC-CCCcCChhHHHHHHHHHHHHHHcCCeeEEEeccCC
Q 017199 80 KEDIDLIAKLGFDAYRFSISWSRIFPDG-LGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWD 142 (375)
Q Consensus 80 ~eDi~l~~~lG~~~~R~si~W~ri~P~~-~g~~~n~~~l~~y~~~i~~l~~~gi~p~vtL~H~~ 142 (375)
+++++.+++.|++.+|++++-+.+.-.. .+ .=.+..++...+.++.+++.|+++.+.+....
T Consensus 77 ~~~i~~a~~~g~~~i~i~~~~s~~~~~~~~~-~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~~ 139 (265)
T cd03174 77 EKGIERALEAGVDEVRIFDSASETHSRKNLN-KSREEDLENAEEAIEAAKEAGLEVEGSLEDAF 139 (265)
T ss_pred hhhHHHHHhCCcCEEEEEEecCHHHHHHHhC-CCHHHHHHHHHHHHHHHHHCCCeEEEEEEeec
Confidence 8999999999999999999866322111 01 11123567888999999999999999985433
No 77
>PRK10933 trehalose-6-phosphate hydrolase; Provisional
Probab=60.00 E-value=19 Score=38.29 Aligned_cols=64 Identities=19% Similarity=0.348 Sum_probs=42.4
Q ss_pred CcccCcHHHHHHHHHcCCCeEEecccccccccCCC-C------CcCChh--HHHHHHHHHHHHHHcCCeeEEEec
Q 017199 74 DHYHRYKEDIDLIAKLGFDAYRFSISWSRIFPDGL-G------TKINME--GITFYNNIIDALLQKGIQPYVTLY 139 (375)
Q Consensus 74 ~~~~~y~eDi~l~~~lG~~~~R~si~W~ri~P~~~-g------~~~n~~--~l~~y~~~i~~l~~~gi~p~vtL~ 139 (375)
.-+.-..+.++-+++||++++=++=-+.. |..+ | ..+|+. ..+-++++|++++++||++|+.+.
T Consensus 30 Gdl~gi~~~ldyl~~lGv~~i~l~P~~~~--~~~~~gY~~~d~~~id~~~Gt~~d~~~lv~~~h~~gi~vilD~V 102 (551)
T PRK10933 30 GDLRGVTQRLDYLQKLGVDAIWLTPFYVS--PQVDNGYDVANYTAIDPTYGTLDDFDELVAQAKSRGIRIILDMV 102 (551)
T ss_pred cCHHHHHHhhHHHHhCCCCEEEECCCCCC--CCCCCCCCcccCCCcCcccCCHHHHHHHHHHHHHCCCEEEEEEC
Confidence 34555668899999999999976543311 1110 1 011111 245689999999999999999764
No 78
>COG0821 gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase [Lipid metabolism]
Probab=59.76 E-value=76 Score=31.55 Aligned_cols=89 Identities=25% Similarity=0.237 Sum_probs=62.9
Q ss_pred CCccCCcccCcHHHHHHHHHcCCCeEEecccccccccCCCCCcCChhHHHHHHHHHHHHHHcCCeeEEEeccCCCchhHH
Q 017199 69 GDVAVDHYHRYKEDIDLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLPLHLH 148 (375)
Q Consensus 69 ~~~a~~~~~~y~eDi~l~~~lG~~~~R~si~W~ri~P~~~g~~~n~~~l~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~ 148 (375)
+-+|-=||+ |+- .-...+.|+..+|+ -| | .+-.+ +....+++.++++|+-.=+...|..+..-+.
T Consensus 76 PLVaDiHf~-~rl-a~~~~~~g~~k~RI-------NP---G-Nig~~--~~v~~vVe~Ak~~g~piRIGVN~GSLek~~~ 140 (361)
T COG0821 76 PLVADIHFD-YRL-ALEAAECGVDKVRI-------NP---G-NIGFK--DRVREVVEAAKDKGIPIRIGVNAGSLEKRLL 140 (361)
T ss_pred CEEEEeecc-HHH-HHHhhhcCcceEEE-------CC---c-ccCcH--HHHHHHHHHHHHcCCCEEEecccCchhHHHH
Confidence 334555666 332 33446778888875 34 4 33221 3789999999999999999999999999999
Q ss_pred hhcCCCCCHHHHHHHHHHHHHHHH
Q 017199 149 ESMGGWLNKEIVKYFEIYADTCFA 172 (375)
Q Consensus 149 ~~~gg~~~~~~~~~f~~ya~~~~~ 172 (375)
++|++-+.+..++--.++++.+-+
T Consensus 141 ~ky~~pt~ealveSAl~~a~~~e~ 164 (361)
T COG0821 141 EKYGGPTPEALVESALEHAELLEE 164 (361)
T ss_pred HHhcCCCHHHHHHHHHHHHHHHHH
Confidence 999876656666666666665433
No 79
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=59.68 E-value=37 Score=32.88 Aligned_cols=86 Identities=16% Similarity=0.122 Sum_probs=60.6
Q ss_pred CcHHHHHHHHHcCCCeEEecccccccccCC-CCCcCChhHHHHHHHHHHHHHHcCCeeEEEecc-CCCchhHHhhcCCCC
Q 017199 78 RYKEDIDLIAKLGFDAYRFSISWSRIFPDG-LGTKINMEGITFYNNIIDALLQKGIQPYVTLYH-WDLPLHLHESMGGWL 155 (375)
Q Consensus 78 ~y~eDi~l~~~lG~~~~R~si~W~ri~P~~-~g~~~n~~~l~~y~~~i~~l~~~gi~p~vtL~H-~~~P~~l~~~~gg~~ 155 (375)
+-.+|+++..+.|++.+|+.++=|...-.. -+ .=.++.++...++|+.++++|+++..++.. |..| +.|..
T Consensus 80 ~~~~~ie~A~~~g~~~v~i~~~~s~~~~~~n~~-~~~~e~l~~~~~~v~~ak~~g~~v~~~i~~~~~~~------~~~~~ 152 (287)
T PRK05692 80 PNLKGLEAALAAGADEVAVFASASEAFSQKNIN-CSIAESLERFEPVAEAAKQAGVRVRGYVSCVLGCP------YEGEV 152 (287)
T ss_pred cCHHHHHHHHHcCCCEEEEEEecCHHHHHHHhC-CCHHHHHHHHHHHHHHHHHcCCEEEEEEEEEecCC------CCCCC
Confidence 358999999999999999998655443221 13 223467889999999999999999877763 4444 23333
Q ss_pred CHHHHHHHHHHHHHHHHH
Q 017199 156 NKEIVKYFEIYADTCFAS 173 (375)
Q Consensus 156 ~~~~~~~f~~ya~~~~~~ 173 (375)
+ .+.+.++++.+.+.
T Consensus 153 ~---~~~~~~~~~~~~~~ 167 (287)
T PRK05692 153 P---PEAVADVAERLFAL 167 (287)
T ss_pred C---HHHHHHHHHHHHHc
Confidence 3 56677777776543
No 80
>cd06593 GH31_xylosidase_YicI YicI alpha-xylosidase is a glycosyl hydrolase family 31 (GH31) enzyme that catalyzes the release of an alpha-xylosyl residue from the non-reducing end of alpha-xyloside substrates such as alpha-xylosyl fluoride and isoprimeverose. YicI forms a homohexamer (a trimer of dimers). All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The YicI family corresponds to subgroup 4 in the Ernst et al classification of GH31 enzymes.
Probab=59.65 E-value=61 Score=31.33 Aligned_cols=106 Identities=15% Similarity=0.201 Sum_probs=67.5
Q ss_pred cHHHHHHHHHcC--CCeEEecccccccccCCCCCcCChhHHHHHHHHHHHHHHcCCeeEEEeccC---CCchhHHhh---
Q 017199 79 YKEDIDLIAKLG--FDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHW---DLPLHLHES--- 150 (375)
Q Consensus 79 y~eDi~l~~~lG--~~~~R~si~W~ri~P~~~g~~~n~~~l~~y~~~i~~l~~~gi~p~vtL~H~---~~P~~l~~~--- 150 (375)
..+-++.+++.| ++++=+.+.|.+-.-.++= .+|++.+--...+|++|+++|+++++.+.-+ +.|..-+.+
T Consensus 26 v~~~~~~~~~~~iP~d~~~lD~~w~~~~~~~~f-~~d~~~FPd~~~~i~~l~~~G~~~~~~~~P~i~~~~~~~~e~~~~g 104 (308)
T cd06593 26 VNEFADGMRERNLPCDVIHLDCFWMKEFQWCDF-EFDPDRFPDPEGMLSRLKEKGFKVCLWINPYIAQKSPLFKEAAEKG 104 (308)
T ss_pred HHHHHHHHHHcCCCeeEEEEecccccCCcceee-EECcccCCCHHHHHHHHHHCCCeEEEEecCCCCCCchhHHHHHHCC
Confidence 456688889999 5567777788753321112 4555555556899999999999998877533 223221110
Q ss_pred ----------c--------CC---CCCHHHHHHHHHHHHHHHHHcCCCcc-eEEeccccc
Q 017199 151 ----------M--------GG---WLNKEIVKYFEIYADTCFASFGDRVK-NWITINEPL 188 (375)
Q Consensus 151 ----------~--------gg---~~~~~~~~~f~~ya~~~~~~~~d~V~-~w~t~NEp~ 188 (375)
+ ++ ++||++.+.|.+..+.+.+ +| |+ +|.=+||+.
T Consensus 105 ~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~~~-~G--id~~~~D~~e~~ 161 (308)
T cd06593 105 YLVKKPDGSVWQWDLWQPGMGIIDFTNPDACKWYKDKLKPLLD-MG--VDCFKTDFGERI 161 (308)
T ss_pred eEEECCCCCeeeecccCCCcccccCCCHHHHHHHHHHHHHHHH-hC--CcEEecCCCCCC
Confidence 0 11 5788999988877776554 43 44 466788873
No 81
>PRK14041 oxaloacetate decarboxylase; Provisional
Probab=57.95 E-value=39 Score=35.20 Aligned_cols=98 Identities=18% Similarity=0.191 Sum_probs=60.2
Q ss_pred cccCcHHH-----HHHHHHcCCCeEEecccccccccCCCCCcCChhHHHHHHHHHHHHHHcCCeeEEEeccCCCchh---
Q 017199 75 HYHRYKED-----IDLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLPLH--- 146 (375)
Q Consensus 75 ~~~~y~eD-----i~l~~~lG~~~~R~si~W~ri~P~~~g~~~n~~~l~~y~~~i~~l~~~gi~p~vtL~H~~~P~~--- 146 (375)
.|..|++| ++...+.|++.+|+.++-+. ++-....++.+++.|+.+..++.+-..|..
T Consensus 88 G~~~~~dDvv~~fv~~A~~~Gvd~irif~~lnd--------------~~n~~~~i~~ak~~G~~v~~~i~~t~~p~~t~e 153 (467)
T PRK14041 88 GYRHYADDVVELFVKKVAEYGLDIIRIFDALND--------------IRNLEKSIEVAKKHGAHVQGAISYTVSPVHTLE 153 (467)
T ss_pred CcccccchhhHHHHHHHHHCCcCEEEEEEeCCH--------------HHHHHHHHHHHHHCCCEEEEEEEeccCCCCCHH
Confidence 46678888 89999999999999886443 233566677888888877777765434511
Q ss_pred -HHh---h-------------cCCCCCHHHHHHHHHHHHHHHHHcCCCcceEEeccccchh
Q 017199 147 -LHE---S-------------MGGWLNKEIVKYFEIYADTCFASFGDRVKNWITINEPLQT 190 (375)
Q Consensus 147 -l~~---~-------------~gg~~~~~~~~~f~~ya~~~~~~~~d~V~~w~t~NEp~~~ 190 (375)
+.+ + -.|-..|. ...+.++.+-++++ ..-...+-|-..+.
T Consensus 154 ~~~~~a~~l~~~Gad~I~i~Dt~G~l~P~---~v~~Lv~~lk~~~~-vpI~~H~Hnt~GlA 210 (467)
T PRK14041 154 YYLEFARELVDMGVDSICIKDMAGLLTPK---RAYELVKALKKKFG-VPVEVHSHCTTGLA 210 (467)
T ss_pred HHHHHHHHHHHcCCCEEEECCccCCcCHH---HHHHHHHHHHHhcC-CceEEEecCCCCcH
Confidence 111 0 03444543 34455566666664 22245677766553
No 82
>TIGR01515 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase. A sequence from Arabidopsis thaliana, GP|9294564, scores just above trusted, but appears either to contain corrupt sequence or, more likely, to be a pseudogene as some of the conserved catalytic residues common to the alpha amylase family are not conserved here.
Probab=57.79 E-value=61 Score=34.84 Aligned_cols=90 Identities=17% Similarity=0.194 Sum_probs=58.0
Q ss_pred cHHHH-HHHHHcCCCeEEe-ccccc--------------ccccCCCCCcCChhHHHHHHHHHHHHHHcCCeeEEEec--c
Q 017199 79 YKEDI-DLIAKLGFDAYRF-SISWS--------------RIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLY--H 140 (375)
Q Consensus 79 y~eDi-~l~~~lG~~~~R~-si~W~--------------ri~P~~~g~~~n~~~l~~y~~~i~~l~~~gi~p~vtL~--H 140 (375)
..+.+ +-+++||++++=+ .|..+ .+.|.- | ..+=+.++|++|+++||++|+.+. |
T Consensus 158 i~~~l~dyl~~LGvt~i~L~Pi~e~~~~~~wGY~~~~y~~~~~~~-G------t~~dlk~lV~~~H~~Gi~VilD~V~NH 230 (613)
T TIGR01515 158 LADQLIPYVKELGFTHIELLPVAEHPFDGSWGYQVTGYYAPTSRF-G------TPDDFMYFVDACHQAGIGVILDWVPGH 230 (613)
T ss_pred HHHHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCccccccc-C------CHHHHHHHHHHHHHCCCEEEEEecccC
Confidence 34454 8889999999987 33322 111111 2 134589999999999999999865 5
Q ss_pred CCC-----------chhHHh-----hcCC-------CCCHHHHHHHHHHHHHHHHHcC
Q 017199 141 WDL-----------PLHLHE-----SMGG-------WLNKEIVKYFEIYADTCFASFG 175 (375)
Q Consensus 141 ~~~-----------P~~l~~-----~~gg-------~~~~~~~~~f~~ya~~~~~~~~ 175 (375)
... |.+... .+.. +.++++.+.+.+-++..+++|+
T Consensus 231 ~~~~~~~~~~~~~~~~y~~~~~~~~~~~~w~~~~~~~~~~~Vr~~l~~~~~~W~~ey~ 288 (613)
T TIGR01515 231 FPKDDHGLAEFDGTPLYEHKDPRDGEHWDWGTLIFDYGRPEVRNFLVANALYWAEFYH 288 (613)
T ss_pred cCCccchhhccCCCcceeccCCccCcCCCCCCceecCCCHHHHHHHHHHHHHHHHHhC
Confidence 421 111110 0011 2468888999999999998887
No 83
>PRK09441 cytoplasmic alpha-amylase; Reviewed
Probab=57.55 E-value=20 Score=37.14 Aligned_cols=65 Identities=22% Similarity=0.268 Sum_probs=42.5
Q ss_pred CcccCcHHHHHHHHHcCCCeEEecccccccc--------cCC---------CCCcCChh--HHHHHHHHHHHHHHcCCee
Q 017199 74 DHYHRYKEDIDLIAKLGFDAYRFSISWSRIF--------PDG---------LGTKINME--GITFYNNIIDALLQKGIQP 134 (375)
Q Consensus 74 ~~~~~y~eDi~l~~~lG~~~~R~si~W~ri~--------P~~---------~g~~~n~~--~l~~y~~~i~~l~~~gi~p 134 (375)
+.|....+-++-+++||++++=++=...-.. |.- .| .+|.. ..+=++++|++|+++||++
T Consensus 19 ~~~~~I~~kldyl~~LGvtaIwl~P~~~~~~~~~~hgY~~~D~~~~~~~~~~~-~id~~fGt~~dl~~Li~~~H~~Gi~v 97 (479)
T PRK09441 19 KLWNRLAERAPELAEAGITAVWLPPAYKGTSGGYDVGYGVYDLFDLGEFDQKG-TVRTKYGTKEELLNAIDALHENGIKV 97 (479)
T ss_pred cHHHHHHHHHHHHHHcCCCEEEeCCCccCCCCCCCCCCCeecccccccccccC-CcCcCcCCHHHHHHHHHHHHHCCCEE
Confidence 4455566778999999999997765433221 110 00 11211 2355899999999999999
Q ss_pred EEEec
Q 017199 135 YVTLY 139 (375)
Q Consensus 135 ~vtL~ 139 (375)
|+.+.
T Consensus 98 i~D~V 102 (479)
T PRK09441 98 YADVV 102 (479)
T ss_pred EEEEC
Confidence 99753
No 84
>PF03659 Glyco_hydro_71: Glycosyl hydrolase family 71 ; InterPro: IPR005197 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of alpha-1,3-glucanases belonging to glycoside hydrolase family 71 (GH71 from CAZY).
Probab=57.10 E-value=48 Score=33.57 Aligned_cols=51 Identities=16% Similarity=0.316 Sum_probs=41.1
Q ss_pred cCcHHHHHHHHHcCCCeEEecccccccccCCCCCcCChhHHHHHHHHHHHHHHcCCeeEEEe
Q 017199 77 HRYKEDIDLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTL 138 (375)
Q Consensus 77 ~~y~eDi~l~~~lG~~~~R~si~W~ri~P~~~g~~~n~~~l~~y~~~i~~l~~~gi~p~vtL 138 (375)
..|++||++.+++||+.|=+.|- .. . ..+. +....+++.+.+.|.+.++.+
T Consensus 17 ~dw~~di~~A~~~GIDgFaLNig------~~-d-~~~~---~~l~~a~~AA~~~gFKlf~Sf 67 (386)
T PF03659_consen 17 EDWEADIRLAQAAGIDGFALNIG------SS-D-SWQP---DQLADAYQAAEAVGFKLFFSF 67 (386)
T ss_pred HHHHHHHHHHHHcCCCEEEEecc------cC-C-cccH---HHHHHHHHHHHhcCCEEEEEe
Confidence 45899999999999999999986 11 2 3443 667889999999999988877
No 85
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=56.84 E-value=43 Score=33.49 Aligned_cols=84 Identities=13% Similarity=0.053 Sum_probs=58.9
Q ss_pred cHHHHHHHHHcCCCeEEecccccccccCC-CCCcCChhHHHHHHHHHHHHHHcCCeeEEEecc-CCCchhHHhhcCCCCC
Q 017199 79 YKEDIDLIAKLGFDAYRFSISWSRIFPDG-LGTKINMEGITFYNNIIDALLQKGIQPYVTLYH-WDLPLHLHESMGGWLN 156 (375)
Q Consensus 79 y~eDi~l~~~lG~~~~R~si~W~ri~P~~-~g~~~n~~~l~~y~~~i~~l~~~gi~p~vtL~H-~~~P~~l~~~~gg~~~ 156 (375)
-.+|++...++|++.+.+.++=|...-.. .+ .=-++.++.+.++|+.++++|+++.+++.. |..| +.|-.+
T Consensus 123 n~~die~A~~~g~~~v~i~~s~Sd~h~~~n~~-~t~~e~l~~~~~~v~~Ak~~Gl~v~~~is~~fg~p------~~~r~~ 195 (347)
T PLN02746 123 NLKGFEAAIAAGAKEVAVFASASESFSKSNIN-CSIEESLVRYREVALAAKKHSIPVRGYVSCVVGCP------IEGPVP 195 (347)
T ss_pred CHHHHHHHHHcCcCEEEEEEecCHHHHHHHhC-CCHHHHHHHHHHHHHHHHHcCCeEEEEEEeeecCC------ccCCCC
Confidence 57999999999999999998766554432 13 233578899999999999999999877753 4444 123222
Q ss_pred HHHHHHHHHHHHHHHH
Q 017199 157 KEIVKYFEIYADTCFA 172 (375)
Q Consensus 157 ~~~~~~f~~ya~~~~~ 172 (375)
++.+.++++.+.+
T Consensus 196 ---~~~l~~~~~~~~~ 208 (347)
T PLN02746 196 ---PSKVAYVAKELYD 208 (347)
T ss_pred ---HHHHHHHHHHHHH
Confidence 4555566666544
No 86
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=56.69 E-value=42 Score=36.05 Aligned_cols=98 Identities=15% Similarity=0.097 Sum_probs=56.1
Q ss_pred cccCcHHH-----HHHHHHcCCCeEEecccccccccCCCCCcCChhHHHHHHHHHHHHHHcCCeeEEEeccCCCc----h
Q 017199 75 HYHRYKED-----IDLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLP----L 145 (375)
Q Consensus 75 ~~~~y~eD-----i~l~~~lG~~~~R~si~W~ri~P~~~g~~~n~~~l~~y~~~i~~l~~~gi~p~vtL~H~~~P----~ 145 (375)
-|.+|.+| ++..++.|++.+|+..+.+.+ +.....|+.+++.|.....++.+-+.| .
T Consensus 90 g~~~ypddvv~~~v~~a~~~Gid~~rifd~lnd~--------------~~~~~ai~~ak~~G~~~~~~i~yt~~p~~~~~ 155 (593)
T PRK14040 90 GYRHYADDVVERFVERAVKNGMDVFRVFDAMNDP--------------RNLETALKAVRKVGAHAQGTLSYTTSPVHTLQ 155 (593)
T ss_pred ccccCcHHHHHHHHHHHHhcCCCEEEEeeeCCcH--------------HHHHHHHHHHHHcCCeEEEEEEEeeCCccCHH
Confidence 46666666 999999999999999654332 334555666666666654444432233 1
Q ss_pred hHHhh----------------cCCCCCHHHHHHHHHHHHHHHHHcCCCcceEEeccccchh
Q 017199 146 HLHES----------------MGGWLNKEIVKYFEIYADTCFASFGDRVKNWITINEPLQT 190 (375)
Q Consensus 146 ~l~~~----------------~gg~~~~~~~~~f~~ya~~~~~~~~d~V~~w~t~NEp~~~ 190 (375)
.+.+. -.|-..|. ...+.++.+-++++ ..-...+-|-..+.
T Consensus 156 ~~~~~a~~l~~~Gad~i~i~Dt~G~l~P~---~~~~lv~~lk~~~~-~pi~~H~Hnt~GlA 212 (593)
T PRK14040 156 TWVDLAKQLEDMGVDSLCIKDMAGLLKPY---AAYELVSRIKKRVD-VPLHLHCHATTGLS 212 (593)
T ss_pred HHHHHHHHHHHcCCCEEEECCCCCCcCHH---HHHHHHHHHHHhcC-CeEEEEECCCCchH
Confidence 11110 03444544 34455556666663 22346788877764
No 87
>PRK09505 malS alpha-amylase; Reviewed
Probab=56.33 E-value=20 Score=39.16 Aligned_cols=61 Identities=25% Similarity=0.420 Sum_probs=40.9
Q ss_pred cHHHHHHHHHcCCCeEEecccccccc-----------cC-C-CC------CcCChh--HHHHHHHHHHHHHHcCCeeEEE
Q 017199 79 YKEDIDLIAKLGFDAYRFSISWSRIF-----------PD-G-LG------TKINME--GITFYNNIIDALLQKGIQPYVT 137 (375)
Q Consensus 79 y~eDi~l~~~lG~~~~R~si~W~ri~-----------P~-~-~g------~~~n~~--~l~~y~~~i~~l~~~gi~p~vt 137 (375)
..+-++-+++||++++=++=-...+. |. . .| ..+|+. ..+=++++|++++++||++|+.
T Consensus 232 i~~kLdyl~~LGv~aIwlsPi~~~~~~~~~~g~~g~~~~~~yhgY~~~D~~~id~~~Gt~~dfk~Lv~~aH~~Gi~VilD 311 (683)
T PRK09505 232 LTEKLDYLQQLGVNALWISSPLEQIHGWVGGGTKGDFPHYAYHGYYTLDWTKLDANMGTEADLRTLVDEAHQRGIRILFD 311 (683)
T ss_pred HHHhhHHHHHcCCCEEEeCccccccccccccccccCCCcCCCCCCCccccccCCCCCCCHHHHHHHHHHHHHCCCEEEEE
Confidence 45668899999999998875443331 10 0 01 012221 3466999999999999999998
Q ss_pred ec
Q 017199 138 LY 139 (375)
Q Consensus 138 L~ 139 (375)
+.
T Consensus 312 ~V 313 (683)
T PRK09505 312 VV 313 (683)
T ss_pred EC
Confidence 54
No 88
>cd06591 GH31_xylosidase_XylS XylS is a glycosyl hydrolase family 31 (GH31) alpha-xylosidase found in prokaryotes, eukaryotes, and archaea, that catalyzes the release of alpha-xylose from the non-reducing terminal side of the alpha-xyloside substrate. XylS has been characterized in Sulfolobus solfataricus where it hydrolyzes isoprimeverose, the p-nitrophenyl-beta derivative of isoprimeverose, and xyloglucan oligosaccharides, and has transxylosidic activity. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The XylS family corresponds to subgroup 3 in the Ernst et al classification of GH31 enzymes.
Probab=55.92 E-value=84 Score=30.72 Aligned_cols=79 Identities=11% Similarity=0.099 Sum_probs=48.9
Q ss_pred CChhHHHHHHHHHHHHHHcCCeeEEEeccC---CCchhHHhh---c--------------------CCCCCHHHHHHHHH
Q 017199 112 INMEGITFYNNIIDALLQKGIQPYVTLYHW---DLPLHLHES---M--------------------GGWLNKEIVKYFEI 165 (375)
Q Consensus 112 ~n~~~l~~y~~~i~~l~~~gi~p~vtL~H~---~~P~~l~~~---~--------------------gg~~~~~~~~~f~~ 165 (375)
+|.+.+---.++|++|+++|+++++.++-+ +.+.+-+.+ | -.|+||+..+.|.+
T Consensus 60 ~d~~~FPdp~~mi~~L~~~G~kv~~~i~P~v~~~~~~y~e~~~~g~~v~~~~g~~~~~~w~g~~~~~Dftnp~a~~w~~~ 139 (319)
T cd06591 60 FDPERFPDPKAMVRELHEMNAELMISIWPTFGPETENYKEMDEKGYLIKTDRGPRVTMQFGGNTRFYDATNPEAREYYWK 139 (319)
T ss_pred EChhhCCCHHHHHHHHHHCCCEEEEEecCCcCCCChhHHHHHHCCEEEEcCCCCeeeeeCCCCccccCCCCHHHHHHHHH
Confidence 444444446889999999999998876422 122211110 0 11678888888776
Q ss_pred HHHHHHHHcCCCcceEEeccccchhh
Q 017199 166 YADTCFASFGDRVKNWITINEPLQTA 191 (375)
Q Consensus 166 ya~~~~~~~~d~V~~w~t~NEp~~~~ 191 (375)
..+......|= --+|+=+|||....
T Consensus 140 ~~~~~~~~~Gv-dg~w~D~~Ep~~~~ 164 (319)
T cd06591 140 QLKKNYYDKGV-DAWWLDAAEPEYSV 164 (319)
T ss_pred HHHHHhhcCCC-cEEEecCCCCCccC
Confidence 65544444432 35689999998654
No 89
>PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed
Probab=55.91 E-value=63 Score=32.34 Aligned_cols=73 Identities=25% Similarity=0.185 Sum_probs=54.7
Q ss_pred HHcCCCeEEecccccccccCCCCCcCChhHHHHHHHHHHHHHHcCCeeEEEeccCCCchhHHhhcCCCCCHHHHHHHHHH
Q 017199 87 AKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLPLHLHESMGGWLNKEIVKYFEIY 166 (375)
Q Consensus 87 ~~lG~~~~R~si~W~ri~P~~~g~~~n~~~l~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~gg~~~~~~~~~f~~y 166 (375)
.+.|++.+| |-| | .+-. --...+.+++.++++|+..=+...|..++.-+.++||+-+....++--.++
T Consensus 98 ~~~G~~~iR-------INP---G-Nig~-~~~~v~~vv~~ak~~~ipIRIGvN~GSL~~~~~~~yg~~t~eamveSAl~~ 165 (360)
T PRK00366 98 AEAGADALR-------INP---G-NIGK-RDERVREVVEAAKDYGIPIRIGVNAGSLEKDLLEKYGEPTPEALVESALRH 165 (360)
T ss_pred HHhCCCEEE-------ECC---C-CCCc-hHHHHHHHHHHHHHCCCCEEEecCCccChHHHHHHcCCCCHHHHHHHHHHH
Confidence 577899985 545 4 4411 025789999999999999999999999999999998653445566666666
Q ss_pred HHHHH
Q 017199 167 ADTCF 171 (375)
Q Consensus 167 a~~~~ 171 (375)
++.|-
T Consensus 166 ~~~le 170 (360)
T PRK00366 166 AKILE 170 (360)
T ss_pred HHHHH
Confidence 66643
No 90
>PRK14705 glycogen branching enzyme; Provisional
Probab=55.79 E-value=62 Score=37.75 Aligned_cols=91 Identities=18% Similarity=0.215 Sum_probs=54.8
Q ss_pred HHHHHHcCCCeEEecc--------cccccccCCCCCcCCh--hHHHHHHHHHHHHHHcCCeeEEEec--cCCCchhHHhh
Q 017199 83 IDLIAKLGFDAYRFSI--------SWSRIFPDGLGTKINM--EGITFYNNIIDALLQKGIQPYVTLY--HWDLPLHLHES 150 (375)
Q Consensus 83 i~l~~~lG~~~~R~si--------~W~ri~P~~~g~~~n~--~~l~~y~~~i~~l~~~gi~p~vtL~--H~~~P~~l~~~ 150 (375)
|+-+|+||++++=+.= +|- -.|..-- .++. -..+=++.+|++|.++||.+|+.+. |+..=.|....
T Consensus 772 ldYlk~LGvt~IeLmPv~e~p~~~swG-Y~~~~y~-ap~~ryGt~~dfk~lVd~~H~~GI~VILD~V~nH~~~d~~~l~~ 849 (1224)
T PRK14705 772 VDYVKWLGFTHVEFMPVAEHPFGGSWG-YQVTSYF-APTSRFGHPDEFRFLVDSLHQAGIGVLLDWVPAHFPKDSWALAQ 849 (1224)
T ss_pred HHHHHHhCCCEEEECccccCCCCCCCC-CCccccC-CcCcccCCHHHHHHHHHHHHHCCCEEEEEeccccCCcchhhhhh
Confidence 6889999999986432 231 1111100 0000 0234489999999999999999854 54211121111
Q ss_pred c----------------CC-------CCCHHHHHHHHHHHHHHHHHcC
Q 017199 151 M----------------GG-------WLNKEIVKYFEIYADTCFASFG 175 (375)
Q Consensus 151 ~----------------gg-------~~~~~~~~~f~~ya~~~~~~~~ 175 (375)
+ .. +.++++.+.+.+=+..-+++|+
T Consensus 850 fdg~~~y~~~d~~~g~~~~Wg~~~fn~~~~eVr~fli~~a~~Wl~eyh 897 (1224)
T PRK14705 850 FDGQPLYEHADPALGEHPDWGTLIFDFGRTEVRNFLVANALYWLDEFH 897 (1224)
T ss_pred cCCCcccccCCcccCCCCCCCCceecCCCHHHHHHHHHHHHHHHHHhC
Confidence 1 11 3457788888888888888887
No 91
>cd06602 GH31_MGAM_SI_GAA This family includes the following three closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), and lysosomal acid alpha-glucosidase (GAA), also known as acid-maltase. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal domain found near the membrane-bound end, and a C-terminal luminal domain. Both of
Probab=55.35 E-value=82 Score=31.15 Aligned_cols=105 Identities=13% Similarity=0.056 Sum_probs=61.3
Q ss_pred HHHHHHHHcCCC--eEEecccccccccCCCCCcCChhHHHHH--HHHHHHHHHcCCeeEEEeccCCCc--------hhHH
Q 017199 81 EDIDLIAKLGFD--AYRFSISWSRIFPDGLGTKINMEGITFY--NNIIDALLQKGIQPYVTLYHWDLP--------LHLH 148 (375)
Q Consensus 81 eDi~l~~~lG~~--~~R~si~W~ri~P~~~g~~~n~~~l~~y--~~~i~~l~~~gi~p~vtL~H~~~P--------~~l~ 148 (375)
+-++.+++.||. ++=+.+.|..- .++= .+|.+.+--- .++|++|+++|+++++.+.-+-.+ .+-+
T Consensus 28 ~~~~~~r~~~iP~d~i~lD~~~~~~--~~~f-~~d~~~FPdp~~~~mi~~L~~~G~k~~~~i~P~v~~~~~~~~~~~~~e 104 (339)
T cd06602 28 EVVENMRAAGIPLDVQWNDIDYMDR--RRDF-TLDPVRFPGLKMPEFVDELHANGQHYVPILDPAISANEPTGSYPPYDR 104 (339)
T ss_pred HHHHHHHHhCCCcceEEECcccccC--ccce-ecccccCCCccHHHHHHHHHHCCCEEEEEEeCccccCcCCCCCHHHHH
Confidence 344555555544 33344455322 1111 2333333333 889999999999999887644322 2211
Q ss_pred h--h-----------c--------C---CCCCHHHHHHHHHHHHHHHHHcCCCcceEEeccccch
Q 017199 149 E--S-----------M--------G---GWLNKEIVKYFEIYADTCFASFGDRVKNWITINEPLQ 189 (375)
Q Consensus 149 ~--~-----------~--------g---g~~~~~~~~~f~~ya~~~~~~~~d~V~~w~t~NEp~~ 189 (375)
. + + + .++|++..+.|.+..+.+...+|- --+|.=+|||..
T Consensus 105 ~~~~g~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~~~~Gv-dg~w~D~~Ep~~ 168 (339)
T cd06602 105 GLEMDVFIKNDDGSPYIGKVWPGYTVFPDFLNPNTQEWWTDEIKDFHDQVPF-DGLWIDMNEPSN 168 (339)
T ss_pred HHHCCeEEECCCCCEEEEEeCCCCCcCcCCCCHHHHHHHHHHHHHHHhcCCC-cEEEecCCCCch
Confidence 1 0 0 1 267899999888877776665543 356899999974
No 92
>PRK12858 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=54.89 E-value=53 Score=32.71 Aligned_cols=52 Identities=19% Similarity=0.248 Sum_probs=43.8
Q ss_pred HHHHHHcCCCeEEecccccccccCCCCCcCChhHHHHHHHHHHHHHHcCCeeEEEe
Q 017199 83 IDLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTL 138 (375)
Q Consensus 83 i~l~~~lG~~~~R~si~W~ri~P~~~g~~~n~~~l~~y~~~i~~l~~~gi~p~vtL 138 (375)
++.++++|.+++-+-+-|. |+... .+|...+++..++.++|++.||..++-+
T Consensus 112 ve~a~~~GAdAVk~lv~~~---~d~~~-~~~~~~~~~l~rv~~ec~~~giPlllE~ 163 (340)
T PRK12858 112 VRRIKEAGADAVKLLLYYR---PDEDD-AINDRKHAFVERVGAECRANDIPFFLEP 163 (340)
T ss_pred HHHHHHcCCCEEEEEEEeC---CCcch-HHHHHHHHHHHHHHHHHHHcCCceEEEE
Confidence 5778999999999999986 54312 4678889999999999999999988864
No 93
>PRK12399 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=53.41 E-value=77 Score=31.33 Aligned_cols=58 Identities=19% Similarity=0.292 Sum_probs=49.3
Q ss_pred HHHHHHcCCCeEEecccccccccCCCCCcCChhHHHHHHHHHHHHHHcCCeeEEEeccCCCc
Q 017199 83 IDLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLP 144 (375)
Q Consensus 83 i~l~~~lG~~~~R~si~W~ri~P~~~g~~~n~~~l~~y~~~i~~l~~~gi~p~vtL~H~~~P 144 (375)
.+.++++|.+++.|=+-|. |+++. .+|..-.++.+++.++|++.+|--++-+..++.+
T Consensus 111 ~~rike~GadavK~Llyy~---pD~~~-~in~~k~a~vervg~eC~a~dipf~lE~ltY~~~ 168 (324)
T PRK12399 111 AKRIKEEGADAVKFLLYYD---VDEPD-EINEQKKAYIERIGSECVAEDIPFFLEILTYDEK 168 (324)
T ss_pred HHHHHHhCCCeEEEEEEEC---CCCCH-HHHHHHHHHHHHHHHHHHHCCCCeEEEEeeccCc
Confidence 6889999999999999886 55433 6888899999999999999999999988765543
No 94
>cd06601 GH31_lyase_GLase GLases (alpha-1,4-glucan lyases) are glycosyl hydrolase family 31 (GH31) enzymes that degrade alpha-1,4-glucans and maltooligosaccharides via a nonhydrolytic pathway to yield 1,5-D-anhydrofructose from the nonreducing end. GLases cleave the bond between C1 and O1 of the nonreducing sugar residue of alpha-glucans to generate a monosaccharide product with a double bond between C1 and C2. This family corresponds to subgroup 2 in the Ernst et al classification of GH31 enzymes.
Probab=53.18 E-value=69 Score=31.69 Aligned_cols=71 Identities=13% Similarity=0.134 Sum_probs=44.3
Q ss_pred HHHHHHHHHHcCCeeEEEeccC-CCchhHHh--hcCCCCCHHHHHHHHHHHHHHHHHcCCCcceEEeccccchhhc
Q 017199 120 YNNIIDALLQKGIQPYVTLYHW-DLPLHLHE--SMGGWLNKEIVKYFEIYADTCFASFGDRVKNWITINEPLQTAV 192 (375)
Q Consensus 120 y~~~i~~l~~~gi~p~vtL~H~-~~P~~l~~--~~gg~~~~~~~~~f~~ya~~~~~~~~d~V~~w~t~NEp~~~~~ 192 (375)
-..++++|++.|++.++.+.-+ ..-..+.. .+-.|.|+++.+.|.+..+.+.+ .| -.-.|+=+|||.+...
T Consensus 66 p~~mv~~L~~~G~klv~~i~P~i~~g~~~~~~~~~pDftnp~ar~wW~~~~~~l~~-~G-v~~~W~DmnEp~~~~~ 139 (332)
T cd06601 66 PKEMFDNLHNKGLKCSTNITPVISYGGGLGSPGLYPDLGRPDVREWWGNQYKYLFD-IG-LEFVWQDMTTPAIMPS 139 (332)
T ss_pred HHHHHHHHHHCCCeEEEEecCceecCccCCCCceeeCCCCHHHHHHHHHHHHHHHh-CC-CceeecCCCCcccccC
Confidence 4789999999999988765411 10000000 01236789988887776554433 23 2246999999998754
No 95
>TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase. Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1-4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system.
Probab=52.87 E-value=25 Score=37.17 Aligned_cols=92 Identities=18% Similarity=0.294 Sum_probs=56.5
Q ss_pred ccCcHHHHHHHHHcCCCeEEeccc--------c-------cccccCCCCCcCChhHHHHHHHHHHHHHHcCCeeEEEec-
Q 017199 76 YHRYKEDIDLIAKLGFDAYRFSIS--------W-------SRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLY- 139 (375)
Q Consensus 76 ~~~y~eDi~l~~~lG~~~~R~si~--------W-------~ri~P~~~g~~~n~~~l~~y~~~i~~l~~~gi~p~vtL~- 139 (375)
+.-..+-++-+++||++++-+.=- | -.+.|.- | ..+=++++|++|.++||++|+.+.
T Consensus 110 ~~gi~~~l~yl~~LGv~~i~L~Pi~~~~~~~~~GY~~~~~~~~~~~~-G------~~~e~k~lV~~aH~~Gi~VilD~V~ 182 (542)
T TIGR02402 110 FDAAIEKLPYLADLGITAIELMPVAQFPGTRGWGYDGVLPYAPHNAY-G------GPDDLKALVDAAHGLGLGVILDVVY 182 (542)
T ss_pred HHHHHHhhHHHHHcCCCEEEeCccccCCCCCCCCCCccCcccccccc-C------CHHHHHHHHHHHHHCCCEEEEEEcc
Confidence 444556689999999999875421 2 1122221 3 245589999999999999999854
Q ss_pred -cCCC---------chhHHhh-cCCC------CCH---HHHHHHHHHHHHHHHHcC
Q 017199 140 -HWDL---------PLHLHES-MGGW------LNK---EIVKYFEIYADTCFASFG 175 (375)
Q Consensus 140 -H~~~---------P~~l~~~-~gg~------~~~---~~~~~f~~ya~~~~~~~~ 175 (375)
|... | |+... ..+| .++ .+.+.+.+-++.-++.|+
T Consensus 183 NH~~~~~~~~~~~~~-y~~~~~~~~wg~~~n~~~~~~~~vr~~i~~~~~~W~~e~~ 237 (542)
T TIGR02402 183 NHFGPEGNYLPRYAP-YFTDRYSTPWGAAINFDGPGSDEVRRYILDNALYWLREYH 237 (542)
T ss_pred CCCCCccccccccCc-cccCCCCCCCCCccccCCCcHHHHHHHHHHHHHHHHHHhC
Confidence 5321 2 22211 1233 234 666777777777666665
No 96
>TIGR02456 treS_nterm trehalose synthase. Trehalose synthase interconverts maltose and alpha, alpha-trehalose by transglucosylation. This is one of at least three mechanisms for biosynthesis of trehalose, an important and widespread compatible solute. However, it is not driven by phosphate activation of sugars and its physiological role may tend toward trehalose degradation. This view is accentuated by numerous examples of fusion to a probable maltokinase domain. The sequence region described by this model is found both as the whole of a trehalose synthase and as the N-terminal region of a larger fusion protein that includes trehalose synthase activity. Several of these fused trehalose synthases have a domain homologous to proteins with maltokinase activity from Actinoplanes missouriensis and Streptomyces coelicolor (PubMed:15378530).
Probab=52.77 E-value=28 Score=36.78 Aligned_cols=57 Identities=21% Similarity=0.412 Sum_probs=39.7
Q ss_pred ccCcHHHHHHHHHcCCCeEEecccc--------------cccccCCCCCcCChhHHHHHHHHHHHHHHcCCeeEEEec
Q 017199 76 YHRYKEDIDLIAKLGFDAYRFSISW--------------SRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLY 139 (375)
Q Consensus 76 ~~~y~eDi~l~~~lG~~~~R~si~W--------------~ri~P~~~g~~~n~~~l~~y~~~i~~l~~~gi~p~vtL~ 139 (375)
+.-..+-++-+++||++++=++=-. -+|.|.- | ..+=++++|++++++||++|+.+.
T Consensus 27 l~gi~~~Ldyl~~LGv~~i~L~Pi~~~~~~~~gY~~~dy~~vd~~~-G------t~~df~~Lv~~ah~~Gi~vilD~V 97 (539)
T TIGR02456 27 FPGLTSKLDYLKWLGVDALWLLPFFQSPLRDDGYDVSDYRAILPEF-G------TIDDFKDFVDEAHARGMRVIIDLV 97 (539)
T ss_pred HHHHHHhHHHHHHCCCCEEEECCCcCCCCCCCCCCcccccccChhh-C------CHHHHHHHHHHHHHCCCEEEEEec
Confidence 3445566889999999998655322 2222221 2 235689999999999999999753
No 97
>cd06604 GH31_glucosidase_II_MalA Alpha-glucosidase II (alpha-D-glucoside glucohydrolase) is a glycosyl hydrolase family 31 (GH31) enzyme, found in bacteria and plants, which has exo-alpha-1,4-glucosidase and oligo-1,6-glucosidase activities. Alpha-glucosidase II has been characterized in Bacillus thermoamyloliquefaciens where it forms a homohexamer. This family also includes the MalA alpha-glucosidase from Sulfolobus sulfataricus and the AglA alpha-glucosidase from Picrophilus torridus. MalA is part of the carbohydrate-metabolizing machinery that allows this organism to utilize carbohydrates, such as maltose, as the sole carbon and energy source.
Probab=52.41 E-value=1e+02 Score=30.39 Aligned_cols=69 Identities=13% Similarity=0.204 Sum_probs=43.8
Q ss_pred HHHHHHHHHHcCCeeEEEeccC-----CCchhHHhh-------------c--------C---CCCCHHHHHHHHHHHHHH
Q 017199 120 YNNIIDALLQKGIQPYVTLYHW-----DLPLHLHES-------------M--------G---GWLNKEIVKYFEIYADTC 170 (375)
Q Consensus 120 y~~~i~~l~~~gi~p~vtL~H~-----~~P~~l~~~-------------~--------g---g~~~~~~~~~f~~ya~~~ 170 (375)
-.++|++|+++|++.++.+.-+ +.|..-+.+ + + .|+||+..+.|.+.-+.+
T Consensus 66 p~~m~~~l~~~g~~~~~~~~P~v~~~~~~~~~~e~~~~g~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~ 145 (339)
T cd06604 66 PKELIKELHEQGFKVVTIIDPGVKVDPGYDVYEEGLENDYFVKDPDGELYIGRVWPGLSAFPDFTNPKVREWWGSLYKKF 145 (339)
T ss_pred HHHHHHHHHHCCCEEEEEEeCceeCCCCChHHHHHHHCCeEEECCCCCEEEEEecCCCccccCCCChHHHHHHHHHHHHH
Confidence 4789999999999987755422 122221110 0 1 367899999887766655
Q ss_pred HHHcCCCcceEEeccccchh
Q 017199 171 FASFGDRVKNWITINEPLQT 190 (375)
Q Consensus 171 ~~~~~d~V~~w~t~NEp~~~ 190 (375)
. ..| ---.|+=+|||..+
T Consensus 146 ~-~~G-vdg~w~D~~Ep~~~ 163 (339)
T cd06604 146 V-DLG-VDGIWNDMNEPAVF 163 (339)
T ss_pred h-hCC-CceEeecCCCcccc
Confidence 4 232 12458899999865
No 98
>cd06598 GH31_transferase_CtsZ CtsZ (cyclic tetrasaccharide-synthesizing enzyme Z) is a bacterial 6-alpha-glucosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsY. CtsZ and CtsY both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=52.37 E-value=1.1e+02 Score=29.94 Aligned_cols=109 Identities=16% Similarity=0.221 Sum_probs=64.6
Q ss_pred HHHHHHHHHcCCC--eEEecccccccccCC--CC-CcCChhHHHHHHHHHHHHHHcCCeeEEEeccC---CCchhHHhh-
Q 017199 80 KEDIDLIAKLGFD--AYRFSISWSRIFPDG--LG-TKINMEGITFYNNIIDALLQKGIQPYVTLYHW---DLPLHLHES- 150 (375)
Q Consensus 80 ~eDi~l~~~lG~~--~~R~si~W~ri~P~~--~g-~~~n~~~l~~y~~~i~~l~~~gi~p~vtL~H~---~~P~~l~~~- 150 (375)
.+-++.+++.||. ++=+++.|....... .| -.+|.+-+---.++|++|+++|+++++.++-+ +.|..-+.+
T Consensus 27 ~~~~~~~~~~~iP~d~i~lD~~w~~~~~~~~~~~~f~wd~~~FPdp~~mi~~L~~~G~k~~~~v~P~v~~~~~~y~e~~~ 106 (317)
T cd06598 27 DDTIKTLREKDFPLDAAILDLYWFGKDIDKGHMGNLDWDRKAFPDPAGMIADLAKKGVKTIVITEPFVLKNSKNWGEAVK 106 (317)
T ss_pred HHHHHHHHHhCCCceEEEEechhhcCcccCCceeeeEeccccCCCHHHHHHHHHHcCCcEEEEEcCcccCCchhHHHHHh
Confidence 3445666666654 566666675432211 01 13344444445789999999999999987644 334321110
Q ss_pred --c-------------------C---CCCCHHHHHHHHHHHHHHHHHcCCCcceEEeccccchh
Q 017199 151 --M-------------------G---GWLNKEIVKYFEIYADTCFASFGDRVKNWITINEPLQT 190 (375)
Q Consensus 151 --~-------------------g---g~~~~~~~~~f~~ya~~~~~~~~d~V~~w~t~NEp~~~ 190 (375)
+ + .++||+..+.|.+..+.+ ...| ---.|.=+|||...
T Consensus 107 ~g~l~~~~~~~~~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~-~~~G-vdg~w~D~~Ep~~~ 168 (317)
T cd06598 107 AGALLKKDQGGVPTLFDFWFGNTGLIDWFDPAAQAWFHDNYKKL-IDQG-VTGWWGDLGEPEVH 168 (317)
T ss_pred CCCEEEECCCCCEeeeeccCCCccccCCCCHHHHHHHHHHHHHh-hhCC-ccEEEecCCCcccc
Confidence 0 1 256899999988877665 2232 12458899999754
No 99
>PRK04161 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=52.31 E-value=82 Score=31.21 Aligned_cols=59 Identities=20% Similarity=0.325 Sum_probs=50.1
Q ss_pred HHHHHHHcCCCeEEecccccccccCCCCCcCChhHHHHHHHHHHHHHHcCCeeEEEeccCCCc
Q 017199 82 DIDLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLP 144 (375)
Q Consensus 82 Di~l~~~lG~~~~R~si~W~ri~P~~~g~~~n~~~l~~y~~~i~~l~~~gi~p~vtL~H~~~P 144 (375)
+.+.++++|.+++.|=+-|. |+++- .+|..-.++.+++.++|++.+|--++-+..+|.+
T Consensus 112 s~~rike~GadavK~Llyy~---pD~~~-ein~~k~a~vervg~eC~a~dipf~lE~l~Yd~~ 170 (329)
T PRK04161 112 SVKRLKEAGADAVKFLLYYD---VDGDE-EINDQKQAYIERIGSECTAEDIPFFLELLTYDER 170 (329)
T ss_pred hHHHHHHhCCCeEEEEEEEC---CCCCH-HHHHHHHHHHHHHHHHHHHCCCCeEEEEeccCCc
Confidence 56889999999999999886 55433 7888889999999999999999999988766543
No 100
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=52.08 E-value=54 Score=32.77 Aligned_cols=59 Identities=22% Similarity=0.182 Sum_probs=46.0
Q ss_pred cHHHHHHHHHcCCCeEEecccccccccCC-CCCcCChhHHHHHHHHHHHHHHcCCeeEEEe
Q 017199 79 YKEDIDLIAKLGFDAYRFSISWSRIFPDG-LGTKINMEGITFYNNIIDALLQKGIQPYVTL 138 (375)
Q Consensus 79 y~eDi~l~~~lG~~~~R~si~W~ri~P~~-~g~~~n~~~l~~y~~~i~~l~~~gi~p~vtL 138 (375)
-++|++.+.+.|++.+|+.++-|.+.-.. -+ .=..+.++...+.|+.+++.|+++.+++
T Consensus 74 ~~~di~~a~~~g~~~i~i~~~~Sd~~~~~~~~-~s~~e~l~~~~~~i~~ak~~g~~v~~~~ 133 (365)
T TIGR02660 74 RDADIEAAARCGVDAVHISIPVSDLQIEAKLR-KDRAWVLERLARLVSFARDRGLFVSVGG 133 (365)
T ss_pred CHHHHHHHHcCCcCEEEEEEccCHHHHHHHhC-cCHHHHHHHHHHHHHHHHhCCCEEEEee
Confidence 38999999999999999999877654332 12 2224578889999999999999987765
No 101
>TIGR00433 bioB biotin synthetase. Catalyzes the last step of the biotin biosynthesis pathway.
Probab=51.80 E-value=44 Score=31.87 Aligned_cols=56 Identities=11% Similarity=0.147 Sum_probs=40.3
Q ss_pred cHHHHHHHHHcCCCeEEeccccc-ccccCCCCCcCChhHHHHHHHHHHHHHHcCCeeEEEe
Q 017199 79 YKEDIDLIAKLGFDAYRFSISWS-RIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTL 138 (375)
Q Consensus 79 y~eDi~l~~~lG~~~~R~si~W~-ri~P~~~g~~~n~~~l~~y~~~i~~l~~~gi~p~vtL 138 (375)
-+|.++.|+++|++.+-++++-+ .+.+.-.+ .. .++.+.+.++.++++||.+.+.+
T Consensus 122 ~~e~l~~Lk~aG~~~v~i~~E~~~~~~~~i~~-~~---s~~~~~~ai~~l~~~Gi~v~~~~ 178 (296)
T TIGR00433 122 DPEQAKRLKDAGLDYYNHNLDTSQEFYSNIIS-TH---TYDDRVDTLENAKKAGLKVCSGG 178 (296)
T ss_pred CHHHHHHHHHcCCCEEEEcccCCHHHHhhccC-CC---CHHHHHHHHHHHHHcCCEEEEeE
Confidence 48999999999999999999821 13332112 22 34668889999999999866554
No 102
>cd06603 GH31_GANC_GANAB_alpha This family includes the closely related glycosyl hydrolase family 31 (GH31) isozymes, neutral alpha-glucosidase C (GANC) and the alpha subunit of heterodimeric neutral alpha-glucosidase AB (GANAB). Initially distinguished on the basis of differences in electrophoretic mobility in starch gel, GANC and GANAB have been shown to have other differences, including those of substrate specificity. GANC and GANAB are key enzymes in glycogen metabolism that hydrolyze terminal, non-reducing 1,4-linked alpha-D-glucose residues from glycogen in the endoplasmic reticulum. The GANC/GANAB family includes the alpha-glucosidase II (ModA) from Dictyostelium discoideum as well as the alpha-glucosidase II (GLS2, or ROT2 - Reversal of TOR2 lethality protein 2) from Saccharomyces cerevisiae.
Probab=51.49 E-value=96 Score=30.58 Aligned_cols=72 Identities=14% Similarity=0.109 Sum_probs=49.2
Q ss_pred HHHHHHHHHHcCCeeEEEeccCCC-----chhHHhh-------------c-----------CCCCCHHHHHHHHHHHHHH
Q 017199 120 YNNIIDALLQKGIQPYVTLYHWDL-----PLHLHES-------------M-----------GGWLNKEIVKYFEIYADTC 170 (375)
Q Consensus 120 y~~~i~~l~~~gi~p~vtL~H~~~-----P~~l~~~-------------~-----------gg~~~~~~~~~f~~ya~~~ 170 (375)
-..+|++|+++|++.++.++-+-. |..-+.+ | -.+.||+.++.|.+..+.+
T Consensus 66 p~~mi~~L~~~G~k~~~~~~P~v~~~~~~~~y~e~~~~g~~vk~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~ 145 (339)
T cd06603 66 PEKMQEKLASKGRKLVTIVDPHIKRDDGYYVYKEAKDKGYLVKNSDGGDFEGWCWPGSSSWPDFLNPEVRDWWASLFSYD 145 (339)
T ss_pred HHHHHHHHHHCCCEEEEEecCceecCCCCHHHHHHHHCCeEEECCCCCEEEEEECCCCcCCccCCChhHHHHHHHHHHHH
Confidence 467999999999998888764422 2221111 0 1267899999999888877
Q ss_pred HHHcC-CCcceEEeccccchhh
Q 017199 171 FASFG-DRVKNWITINEPLQTA 191 (375)
Q Consensus 171 ~~~~~-d~V~~w~t~NEp~~~~ 191 (375)
....+ +-+-.|+=+|||.++.
T Consensus 146 ~~~~~~g~~g~w~D~~Ep~~f~ 167 (339)
T cd06603 146 KYKGSTENLYIWNDMNEPSVFN 167 (339)
T ss_pred hhcccCCCceEEeccCCccccC
Confidence 65433 2346799999998753
No 103
>PLN02784 alpha-amylase
Probab=51.10 E-value=32 Score=38.41 Aligned_cols=65 Identities=17% Similarity=0.280 Sum_probs=45.9
Q ss_pred CcccCcHHHHHHHHHcCCCeEEecccccccccCCCC----CcCChh--HHHHHHHHHHHHHHcCCeeEEEe
Q 017199 74 DHYHRYKEDIDLIAKLGFDAYRFSISWSRIFPDGLG----TKINME--GITFYNNIIDALLQKGIQPYVTL 138 (375)
Q Consensus 74 ~~~~~y~eDi~l~~~lG~~~~R~si~W~ri~P~~~g----~~~n~~--~l~~y~~~i~~l~~~gi~p~vtL 138 (375)
.+|....+.++-+++||++++=++=.-....+.|-. -.+|.. ..+=++.+|++|+++||++|+.+
T Consensus 518 ~w~~~I~ekldyL~~LG~taIWLpP~~~s~s~~GY~p~D~y~lds~yGT~~ELk~LI~a~H~~GIkVIlDi 588 (894)
T PLN02784 518 RWYMELGEKAAELSSLGFTVVWLPPPTESVSPEGYMPKDLYNLNSRYGTIDELKDLVKSFHEVGIKVLGDA 588 (894)
T ss_pred chHHHHHHHHHHHHHhCCCEEEeCCCCCCCCCCCcCcccccccCcCcCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 568888999999999999999876644333332210 011211 23558999999999999999974
No 104
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=50.80 E-value=63 Score=32.50 Aligned_cols=58 Identities=24% Similarity=0.202 Sum_probs=46.6
Q ss_pred HHHHHHHHHcCCCeEEecccccccccCC-CCCcCChhHHHHHHHHHHHHHHcCCeeEEEe
Q 017199 80 KEDIDLIAKLGFDAYRFSISWSRIFPDG-LGTKINMEGITFYNNIIDALLQKGIQPYVTL 138 (375)
Q Consensus 80 ~eDi~l~~~lG~~~~R~si~W~ri~P~~-~g~~~n~~~l~~y~~~i~~l~~~gi~p~vtL 138 (375)
++|++.+.+.|++.+|++++-|.+.-.. -+ .--++.++...+.++.+++.|+++.++.
T Consensus 78 ~~di~~a~~~g~~~i~i~~~~Sd~h~~~~~~-~s~~~~l~~~~~~v~~a~~~G~~v~~~~ 136 (378)
T PRK11858 78 KSDIDASIDCGVDAVHIFIATSDIHIKHKLK-KTREEVLERMVEAVEYAKDHGLYVSFSA 136 (378)
T ss_pred HHHHHHHHhCCcCEEEEEEcCCHHHHHHHhC-CCHHHHHHHHHHHHHHHHHCCCeEEEEe
Confidence 7899999999999999999877654332 13 2235678899999999999999988875
No 105
>PRK10785 maltodextrin glucosidase; Provisional
Probab=50.50 E-value=37 Score=36.37 Aligned_cols=54 Identities=20% Similarity=0.277 Sum_probs=39.1
Q ss_pred cHHHHHHHHHcCCCeEEecc-------------cccccccCCCCCcCChhHHHHHHHHHHHHHHcCCeeEEEec
Q 017199 79 YKEDIDLIAKLGFDAYRFSI-------------SWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLY 139 (375)
Q Consensus 79 y~eDi~l~~~lG~~~~R~si-------------~W~ri~P~~~g~~~n~~~l~~y~~~i~~l~~~gi~p~vtL~ 139 (375)
..+-++-+++|||+++=++= ++-+|.|.- | ..+=++++|++++++||++|+.+.
T Consensus 181 I~~kLdYL~~LGv~~I~L~Pif~s~s~hgYd~~Dy~~iDp~~-G------t~~df~~Lv~~aH~rGikVilD~V 247 (598)
T PRK10785 181 ISEKLPYLKKLGVTALYLNPIFTAPSVHKYDTEDYRHVDPQL-G------GDAALLRLRHATQQRGMRLVLDGV 247 (598)
T ss_pred HHHHHHHHHHcCCCEEEeCCcccCCCCCCcCcccccccCccc-C------CHHHHHHHHHHHHHCCCEEEEEEC
Confidence 44568899999999987653 222333332 2 235689999999999999999764
No 106
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=50.26 E-value=62 Score=30.87 Aligned_cols=47 Identities=15% Similarity=0.144 Sum_probs=39.3
Q ss_pred HHHHHHHHHcCCCeEEecccccccccCCCCCcCChhHHHHHHHHHHHHHHcCCeeEEEecc
Q 017199 80 KEDIDLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYH 140 (375)
Q Consensus 80 ~eDi~l~~~lG~~~~R~si~W~ri~P~~~g~~~n~~~l~~y~~~i~~l~~~gi~p~vtL~H 140 (375)
.+|++...+.|++.+|+++..+ .++...++++.+++.|+++.+++.+
T Consensus 85 ~~~l~~a~~~gv~~iri~~~~~--------------~~~~~~~~i~~ak~~G~~v~~~~~~ 131 (266)
T cd07944 85 IDLLEPASGSVVDMIRVAFHKH--------------EFDEALPLIKAIKEKGYEVFFNLMA 131 (266)
T ss_pred HHHHHHHhcCCcCEEEEecccc--------------cHHHHHHHHHHHHHCCCeEEEEEEe
Confidence 5789999999999999987432 2466789999999999999998864
No 107
>PLN02447 1,4-alpha-glucan-branching enzyme
Probab=49.83 E-value=34 Score=37.79 Aligned_cols=87 Identities=16% Similarity=0.240 Sum_probs=54.9
Q ss_pred HHHHHHHcCCCeEEeccccc---------------ccccCCCCCcCChhHHHHHHHHHHHHHHcCCeeEEEecc--CCC-
Q 017199 82 DIDLIAKLGFDAYRFSISWS---------------RIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYH--WDL- 143 (375)
Q Consensus 82 Di~l~~~lG~~~~R~si~W~---------------ri~P~~~g~~~n~~~l~~y~~~i~~l~~~gi~p~vtL~H--~~~- 143 (375)
-++-+++||++++-+.=-.. .+.|.- | . .+-++++|++|.++||.+|+.+.+ +.-
T Consensus 256 ~L~ylk~LG~t~I~LmPi~e~~~~~~wGY~~~~~fa~~~~~-G-t-----p~dlk~LVd~aH~~GI~VilDvV~nH~~~~ 328 (758)
T PLN02447 256 VLPRIKALGYNAVQLMAIQEHAYYGSFGYHVTNFFAVSSRS-G-T-----PEDLKYLIDKAHSLGLRVLMDVVHSHASKN 328 (758)
T ss_pred HHHHHHHcCCCEEEECCccccCCCCCCCcCcccCccccccc-C-C-----HHHHHHHHHHHHHCCCEEEEEecccccccc
Confidence 38999999999997653222 121111 2 1 245899999999999999998663 211
Q ss_pred ------------chhHHhhcCC----C-------CCHHHHHHHHHHHHHHHHHcC
Q 017199 144 ------------PLHLHESMGG----W-------LNKEIVKYFEIYADTCFASFG 175 (375)
Q Consensus 144 ------------P~~l~~~~gg----~-------~~~~~~~~f~~ya~~~~~~~~ 175 (375)
+.|+...-.| | .++++...+.+-++.-+++|+
T Consensus 329 ~~~gl~~fDg~~~~Yf~~~~~g~~~~w~~~~~N~~~~eVr~fLl~~~~~Wl~ey~ 383 (758)
T PLN02447 329 TLDGLNGFDGTDGSYFHSGPRGYHWLWDSRLFNYGNWEVLRFLLSNLRWWLEEYK 383 (758)
T ss_pred ccccccccCCCCccccccCCCCCcCcCCCceecCCCHHHHHHHHHHHHHHHHHhC
Confidence 1222210011 2 346777777777788788775
No 108
>PRK03705 glycogen debranching enzyme; Provisional
Probab=49.26 E-value=39 Score=36.70 Aligned_cols=91 Identities=15% Similarity=0.189 Sum_probs=55.4
Q ss_pred HHHHHHcCCCeEEecc------------------------cccccccCCCCCcCChhHHHHHHHHHHHHHHcCCeeEEEe
Q 017199 83 IDLIAKLGFDAYRFSI------------------------SWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTL 138 (375)
Q Consensus 83 i~l~~~lG~~~~R~si------------------------~W~ri~P~~~g~~~n~~~l~~y~~~i~~l~~~gi~p~vtL 138 (375)
|+-+++|||+++=+.= .+-.+.|.- |+..+ ..++=+++||++|.++||++|+.+
T Consensus 185 LdYLk~LGvt~I~L~Pv~~~~~~~~~~~~g~~~ywGYd~~~yfa~d~~y-gt~~~-~~~~efk~LV~~~H~~GI~VIlDv 262 (658)
T PRK03705 185 IAYLKQLGITALELLPVAQFASEPRLQRMGLSNYWGYNPLAMFALDPAY-ASGPE-TALDEFRDAVKALHKAGIEVILDV 262 (658)
T ss_pred hHHHHHcCCCEEEecCcccCCCcccccccccccccCccccccccccccc-CCCCc-chHHHHHHHHHHHHHCCCEEEEEE
Confidence 8899999999986532 112233321 21111 235679999999999999999975
Q ss_pred c--cCC-----Cch----------hH--Hh--hc---CC------CCCHHHHHHHHHHHHHHHHHcC
Q 017199 139 Y--HWD-----LPL----------HL--HE--SM---GG------WLNKEIVKYFEIYADTCFASFG 175 (375)
Q Consensus 139 ~--H~~-----~P~----------~l--~~--~~---gg------~~~~~~~~~f~~ya~~~~~~~~ 175 (375)
. |-. -|. +. .. .| .| +.++.+.+.+.+-++.-++.||
T Consensus 263 V~NHt~~~~~~~~~~~~~~~d~~~yy~~~~~g~~~~~~g~g~~ln~~~p~Vr~~iid~l~~W~~e~g 329 (658)
T PRK03705 263 VFNHSAELDLDGPTLSLRGIDNRSYYWIREDGDYHNWTGCGNTLNLSHPAVVDWAIDCLRYWVETCH 329 (658)
T ss_pred cccCccCcCCCCcchhcccCCCccceEECCCCCcCCCCCccCcccCCCHHHHHHHHHHHHHHHHHhC
Confidence 4 422 121 11 00 01 11 2367777888877777777766
No 109
>PRK08599 coproporphyrinogen III oxidase; Provisional
Probab=48.25 E-value=83 Score=31.39 Aligned_cols=105 Identities=16% Similarity=0.169 Sum_probs=59.7
Q ss_pred cHHHHHHHHHcCCCeEEeccc--ccccccCCCCCcCChhHHHHHHHHHHHHHHcCCeeE-EEeccCCCchhHHhhcCCCC
Q 017199 79 YKEDIDLIAKLGFDAYRFSIS--WSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPY-VTLYHWDLPLHLHESMGGWL 155 (375)
Q Consensus 79 y~eDi~l~~~lG~~~~R~si~--W~ri~P~~~g~~~n~~~l~~y~~~i~~l~~~gi~p~-vtL~H~~~P~~l~~~~gg~~ 155 (375)
-++.+++|+++|++.+-+++. -.++...- +...+ .+-..+.++.+++.|+..+ +.+. +++|. .
T Consensus 99 ~~e~l~~l~~~G~~rvsiGvqS~~~~~l~~l-~r~~~---~~~~~~~i~~l~~~g~~~v~~dli-~GlPg---------q 164 (377)
T PRK08599 99 TKEKLQVLKDSGVNRISLGVQTFNDELLKKI-GRTHN---EEDVYEAIANAKKAGFDNISIDLI-YALPG---------Q 164 (377)
T ss_pred CHHHHHHHHHcCCCEEEEecccCCHHHHHHc-CCCCC---HHHHHHHHHHHHHcCCCcEEEeee-cCCCC---------C
Confidence 468899999999997777772 22333322 21223 3567889999999999743 4443 45552 2
Q ss_pred CHHHHHHHHHHHHHHHHHcCCCcceEEeccccchhhccccccccc
Q 017199 156 NKEIVKYFEIYADTCFASFGDRVKNWITINEPLQTAVNGYCTGIF 200 (375)
Q Consensus 156 ~~~~~~~f~~ya~~~~~~~~d~V~~w~t~NEp~~~~~~gy~~g~~ 200 (375)
+ .+.|.+=.+.+.+.=-+.|..+...-+|+.....-+..|..
T Consensus 165 t---~~~~~~~l~~~~~l~~~~i~~y~l~~~pgT~~~~~~~~g~~ 206 (377)
T PRK08599 165 T---IEDFKESLAKALALDIPHYSAYSLILEPKTVFYNLMRKGKL 206 (377)
T ss_pred C---HHHHHHHHHHHHccCCCEEeeeceeecCCChhHHHHhcCCC
Confidence 3 33444444444332223455555556776544333333433
No 110
>COG1501 Alpha-glucosidases, family 31 of glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=48.15 E-value=62 Score=35.92 Aligned_cols=101 Identities=20% Similarity=0.310 Sum_probs=64.4
Q ss_pred cCCCeEEeccc-ccccccCCCCCcCChhHHHHHHHHHHHHHHcCCeeEEEeccC---CCchhHH--hh------------
Q 017199 89 LGFDAYRFSIS-WSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHW---DLPLHLH--ES------------ 150 (375)
Q Consensus 89 lG~~~~R~si~-W~ri~P~~~g~~~n~~~l~~y~~~i~~l~~~gi~p~vtL~H~---~~P~~l~--~~------------ 150 (375)
+=++++++++. |.+ ..+.= .+|..-+---+.||+.|++.||+.++.+... |.|..=+ ++
T Consensus 294 IP~d~~~lD~~~~~~--~~~~F-~wd~~~FP~pk~mi~~l~~~Gikl~~~i~P~i~~d~~~~~e~~~~Gy~~k~~~g~~~ 370 (772)
T COG1501 294 IPLDVFVLDIDFWMD--NWGDF-TWDPDRFPDPKQMIAELHEKGIKLIVIINPYIKQDSPLFKEAIEKGYFVKDPDGEIY 370 (772)
T ss_pred CcceEEEEeehhhhc--cccce-EECcccCCCHHHHHHHHHhcCceEEEEeccccccCCchHHHHHHCCeEEECCCCCEe
Confidence 45779999995 876 22212 4455444455699999999999999987632 3333211 11
Q ss_pred ----------cCCCCCHHHHHHHHHHHHHHHHHcCCCcceEEeccccchhhcc
Q 017199 151 ----------MGGWLNKEIVKYFEIYADTCFASFGDRVKNWITINEPLQTAVN 193 (375)
Q Consensus 151 ----------~gg~~~~~~~~~f~~ya~~~~~~~~d~V~~w~t~NEp~~~~~~ 193 (375)
+-.|+||+.++.|.+....-...+| -.-+|.=+|||.+....
T Consensus 371 ~~~~w~~~~a~~DFtnp~~r~Ww~~~~~~~l~d~G-v~g~W~D~nEp~~~~~~ 422 (772)
T COG1501 371 QADFWPGNSAFPDFTNPDAREWWASDKKKNLLDLG-VDGFWNDMNEPEPFDGD 422 (772)
T ss_pred eecccCCcccccCCCCHHHHHHHHHHHHhHHHhcC-ccEEEccCCCCcccccc
Confidence 0127899999999873333233333 24679999999987543
No 111
>cd06600 GH31_MGAM-like This family includes the following closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), lysosomal acid alpha-glucosidase (GAA), neutral alpha-glucosidase C (GANC), the alpha subunit of neutral alpha-glucosidase AB (GANAB), and alpha-glucosidase II. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal do
Probab=48.15 E-value=1.4e+02 Score=29.19 Aligned_cols=104 Identities=15% Similarity=0.161 Sum_probs=60.3
Q ss_pred HHHHHHcCCC--eEEecccccccccCCCCCcCChhHHHHHHHHHHHHHHcCCeeEEEeccCCC-----chhHHhh-----
Q 017199 83 IDLIAKLGFD--AYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDL-----PLHLHES----- 150 (375)
Q Consensus 83 i~l~~~lG~~--~~R~si~W~ri~P~~~g~~~n~~~l~~y~~~i~~l~~~gi~p~vtL~H~~~-----P~~l~~~----- 150 (375)
++.+++.+|. ++=+++.|..- .+ .-.+|.+.+--..++|+.|+++|++.++.+.-+-. |...+..
T Consensus 30 ~~~~~~~~iP~d~i~lD~~~~~~--~~-~f~~d~~~FPdp~~~i~~l~~~g~k~~~~~~P~i~~~~~~~~~~~~~~~~~~ 106 (317)
T cd06600 30 VDIMQKEGFPYDVVFLDIHYMDS--YR-LFTWDPYRFPEPKKLIDELHKRNVKLVTIVDPGIRVDQNYSPFLSGMDKGKF 106 (317)
T ss_pred HHHHHHcCCCcceEEEChhhhCC--CC-ceeechhcCCCHHHHHHHHHHCCCEEEEEeeccccCCCCChHHHHHHHCCEE
Confidence 4445555543 34444445321 11 11334444444578999999999998887653311 2221110
Q ss_pred -------------------cCCCCCHHHHHHHHHHHHHHHHHcCCCcceEEeccccchh
Q 017199 151 -------------------MGGWLNKEIVKYFEIYADTCFASFGDRVKNWITINEPLQT 190 (375)
Q Consensus 151 -------------------~gg~~~~~~~~~f~~ya~~~~~~~~d~V~~w~t~NEp~~~ 190 (375)
+-.|+||+..+.|.+..+.+....|- .-.|+=+|||..+
T Consensus 107 v~~~~g~~~~~~~w~G~~~~~Dftnp~a~~ww~~~~~~~~~~~gv-dg~w~D~~Ep~~~ 164 (317)
T cd06600 107 CEIESGELFVGKMWPGTTVYPDFTNPDTREWWAGLFSEWLNSQGV-DGIWLDMNEPSDF 164 (317)
T ss_pred EECCCCCeEEEeecCCCccccCCCChHHHHHHHHHHHHHhhcCCC-ceEEeeCCCCccH
Confidence 01268899999998888776655542 3468999999743
No 112
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=47.62 E-value=1.1e+02 Score=29.33 Aligned_cols=47 Identities=17% Similarity=0.152 Sum_probs=38.1
Q ss_pred cHHHHHHHHHcCCCeEEecccccccccCCCCCcCChhHHHHHHHHHHHHHHcCCeeEEEec
Q 017199 79 YKEDIDLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLY 139 (375)
Q Consensus 79 y~eDi~l~~~lG~~~~R~si~W~ri~P~~~g~~~n~~~l~~y~~~i~~l~~~gi~p~vtL~ 139 (375)
-++|++...+.|++.+|+++.-+. ++.-.+.++.++++|+++.+.+.
T Consensus 93 ~~~di~~~~~~g~~~iri~~~~~~--------------~~~~~~~i~~ak~~G~~v~~~i~ 139 (275)
T cd07937 93 VELFVEKAAKNGIDIFRIFDALND--------------VRNLEVAIKAVKKAGKHVEGAIC 139 (275)
T ss_pred HHHHHHHHHHcCCCEEEEeecCCh--------------HHHHHHHHHHHHHCCCeEEEEEE
Confidence 478899999999999999775332 45678889999999999887663
No 113
>TIGR00539 hemN_rel putative oxygen-independent coproporphyrinogen III oxidase. Experimentally determined examples of oxygen-independent coproporphyrinogen III oxidase, an enzyme that replaces HemF function under anaerobic conditions, belong to a family of proteins described by the model hemN. This model, hemN_rel, models a closely related protein, shorter at the amino end and lacking the region containing the motif PYRT[SC]YP found in members of the hemN family. Several species, including E. coli, Helicobacter pylori, Aquifex aeolicus, and Chlamydia trachomatis, have members of both this family and the E. coli hemN family. The member of this family from Bacillus subtilis was shown to complement an hemF/hemN double mutant of Salmonella typimurium and to prevent accumulation of coproporphyrinogen III under anaerobic conditions, but the exact role of this protein is still uncertain. It is found in a number of species that do not synthesize heme de novo.
Probab=47.42 E-value=47 Score=33.01 Aligned_cols=94 Identities=14% Similarity=0.138 Sum_probs=54.8
Q ss_pred cHHHHHHHHHcCCCeEEeccc-cc-ccccCCCCCcCChhHHHHHHHHHHHHHHcCCeeE-EEeccCCCchhHHhhcCCCC
Q 017199 79 YKEDIDLIAKLGFDAYRFSIS-WS-RIFPDGLGTKINMEGITFYNNIIDALLQKGIQPY-VTLYHWDLPLHLHESMGGWL 155 (375)
Q Consensus 79 y~eDi~l~~~lG~~~~R~si~-W~-ri~P~~~g~~~n~~~l~~y~~~i~~l~~~gi~p~-vtL~H~~~P~~l~~~~gg~~ 155 (375)
-++.++.|+++|++.+-+++. -+ ++...- |...+ .+-+.+.|+.+++.|+.++ +.|. +++|. .
T Consensus 99 t~e~l~~l~~~Gv~risiGvqS~~~~~l~~l-gR~~~---~~~~~~ai~~l~~~G~~~v~~dli-~GlPg---------q 164 (360)
T TIGR00539 99 TAEWCKGLKGAGINRLSLGVQSFRDDKLLFL-GRQHS---AKNIAPAIETALKSGIENISLDLM-YGLPL---------Q 164 (360)
T ss_pred CHHHHHHHHHcCCCEEEEecccCChHHHHHh-CCCCC---HHHHHHHHHHHHHcCCCeEEEecc-CCCCC---------C
Confidence 368899999999997766663 32 233222 31122 4667889999999999754 5443 46662 2
Q ss_pred CHHHHHHHHHHHHHHHHHcCCCcceEEeccccch
Q 017199 156 NKEIVKYFEIYADTCFASFGDRVKNWITINEPLQ 189 (375)
Q Consensus 156 ~~~~~~~f~~ya~~~~~~~~d~V~~w~t~NEp~~ 189 (375)
+ .+.+.+-.+.+.+.=-+.+..+...=||+.
T Consensus 165 t---~~~~~~~l~~~~~l~~~~is~y~l~~~~gT 195 (360)
T TIGR00539 165 T---LNSLKEELKLAKELPINHLSAYALSVEPNT 195 (360)
T ss_pred C---HHHHHHHHHHHHccCCCEEEeecceEcCCC
Confidence 2 344444455544322244555554445553
No 114
>PRK08446 coproporphyrinogen III oxidase; Provisional
Probab=46.55 E-value=67 Score=31.81 Aligned_cols=94 Identities=15% Similarity=0.134 Sum_probs=57.1
Q ss_pred HHHHHHHHHcCCCeEEecc-ccc-ccccCCCCCcCChhHHHHHHHHHHHHHHcCCeeE-EEeccCCCchhHHhhcCCCCC
Q 017199 80 KEDIDLIAKLGFDAYRFSI-SWS-RIFPDGLGTKINMEGITFYNNIIDALLQKGIQPY-VTLYHWDLPLHLHESMGGWLN 156 (375)
Q Consensus 80 ~eDi~l~~~lG~~~~R~si-~W~-ri~P~~~g~~~n~~~l~~y~~~i~~l~~~gi~p~-vtL~H~~~P~~l~~~~gg~~~ 156 (375)
++.++.|+++|+|.+-++| +-+ .+...- |...+ .+-..+.++.+++.|+..+ ++|. +++|.
T Consensus 98 ~e~l~~l~~~GvnRiSiGvQS~~~~~L~~l-gR~~~---~~~~~~ai~~lr~~g~~~v~iDli-~GlPg----------- 161 (350)
T PRK08446 98 KAWLKGMKNLGVNRISFGVQSFNEDKLKFL-GRIHS---QKQIIKAIENAKKAGFENISIDLI-YDTPL----------- 161 (350)
T ss_pred HHHHHHHHHcCCCEEEEecccCCHHHHHHc-CCCCC---HHHHHHHHHHHHHcCCCEEEEEee-cCCCC-----------
Confidence 6889999999999777776 332 222221 31122 3567889999999999854 6665 46662
Q ss_pred HHHHHHHHHHHHHHHHHcCCCcceEEeccccchh
Q 017199 157 KEIVKYFEIYADTCFASFGDRVKNWITINEPLQT 190 (375)
Q Consensus 157 ~~~~~~f~~ya~~~~~~~~d~V~~w~t~NEp~~~ 190 (375)
++.+.|.+-.+.+.+.=-+.|..+...=||+..
T Consensus 162 -qt~~~~~~~l~~~~~l~~~~is~y~L~~~~gT~ 194 (350)
T PRK08446 162 -DNKKLLKEELKLAKELPINHLSAYSLTIEENTP 194 (350)
T ss_pred -CCHHHHHHHHHHHHhcCCCEEEeccceecCCCh
Confidence 234455555555444223455555555566543
No 115
>cd02742 GH20_hexosaminidase Beta-N-acetylhexosaminidases of glycosyl hydrolase family 20 (GH20) catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. These enzymes are broadly distributed in microorganisms, plants and animals, and play roles in various key physiological and pathological processes. These processes include cell structural integrity, energy storage, cellular signaling, fertilization, pathogen defense, viral penetration, the development of carcinomas, inflammatory events and lysosomal storage disorders. The GH20 enzymes include the eukaryotic beta-N-acetylhexosaminidases A and B, the bacterial chitobiases, dispersin B, and lacto-N-biosidase. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by the solvent or the enzyme, but by the substrate itself.
Probab=46.16 E-value=67 Score=31.17 Aligned_cols=63 Identities=24% Similarity=0.504 Sum_probs=46.1
Q ss_pred cHHHHHHHHHcCCCeEEeccc----ccc---cccC------------CCCCcCChhHHHHHHHHHHHHHHcCCeeEEEec
Q 017199 79 YKEDIDLIAKLGFDAYRFSIS----WSR---IFPD------------GLGTKINMEGITFYNNIIDALLQKGIQPYVTLY 139 (375)
Q Consensus 79 y~eDi~l~~~lG~~~~R~si~----W~r---i~P~------------~~g~~~n~~~l~~y~~~i~~l~~~gi~p~vtL~ 139 (375)
.++-|+.|+..++|.+.+-++ |+- ..|+ +.| .+..+ =++++++.++++||++|.-+
T Consensus 18 lk~~id~ma~~K~N~lhlHl~D~~~~~le~~~~p~l~~~g~~~~~~~~~~-~yT~~---di~elv~yA~~rgI~viPEi- 92 (303)
T cd02742 18 IKRTIDVLARYKINTFHWHLTDDQAWRIESKKFPELAEKGGQINPRSPGG-FYTYA---QLKDIIEYAAARGIEVIPEI- 92 (303)
T ss_pred HHHHHHHHHHhCCcEEEEeeecCCCceEeeCccchhhhhcccccCCCCCC-eECHH---HHHHHHHHHHHcCCEEEEec-
Confidence 567799999999999877765 521 1121 113 56654 47999999999999999987
Q ss_pred cCCCchhHH
Q 017199 140 HWDLPLHLH 148 (375)
Q Consensus 140 H~~~P~~l~ 148 (375)
|+|....
T Consensus 93 --D~PGH~~ 99 (303)
T cd02742 93 --DMPGHST 99 (303)
T ss_pred --cchHHHH
Confidence 7887654
No 116
>COG3589 Uncharacterized conserved protein [Function unknown]
Probab=45.76 E-value=89 Score=31.12 Aligned_cols=71 Identities=18% Similarity=0.212 Sum_probs=51.7
Q ss_pred HHHHHHHHcCCCeEEecccccccccCCCCCcCChhHHHHHHHHHHHHHHcCCeeEEEeccCCCchhHHhhcCCCCCHHHH
Q 017199 81 EDIDLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLPLHLHESMGGWLNKEIV 160 (375)
Q Consensus 81 eDi~l~~~lG~~~~R~si~W~ri~P~~~g~~~n~~~l~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~gg~~~~~~~ 160 (375)
.-|++|.+.|++-+=.|+- .|++ -+...++.+.++++.+.+.|+++||.+. |.-|.. -|| +.+.+
T Consensus 20 ~Yi~~~~~~Gf~~IFtsl~----~~~~----~~~~~~~~~~ell~~Anklg~~vivDvn----Psil~~--l~~-S~~~l 84 (360)
T COG3589 20 AYIDRMHKYGFKRIFTSLL----IPEE----DAELYFHRFKELLKEANKLGLRVIVDVN----PSILKE--LNI-SLDNL 84 (360)
T ss_pred HHHHHHHHcCccceeeecc----cCCc----hHHHHHHHHHHHHHHHHhcCcEEEEEcC----HHHHhh--cCC-ChHHH
Confidence 3478999999987777663 3443 2335789999999999999999999984 887765 344 33446
Q ss_pred HHHHHH
Q 017199 161 KYFEIY 166 (375)
Q Consensus 161 ~~f~~y 166 (375)
+.|.+.
T Consensus 85 ~~f~e~ 90 (360)
T COG3589 85 SRFQEL 90 (360)
T ss_pred HHHHHh
Confidence 666655
No 117
>TIGR00612 ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase. Chlamydial members of the family have a long insert. The family is largely restricted to Bacteria, where it is widely but not universally distributed. No homology can be detected between the GcpE family and other proteins.
Probab=45.61 E-value=85 Score=31.22 Aligned_cols=88 Identities=19% Similarity=0.156 Sum_probs=62.6
Q ss_pred CCccCCcccCcHHHHHHHHHcCCCeEEecccccccccCCCCCcCChhHHHHHHHHHHHHHHcCCeeEEEeccCCCchhHH
Q 017199 69 GDVAVDHYHRYKEDIDLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLPLHLH 148 (375)
Q Consensus 69 ~~~a~~~~~~y~eDi~l~~~lG~~~~R~si~W~ri~P~~~g~~~n~~~l~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~ 148 (375)
+-+|.-||+ |+.-+. ..+.|++.+|+ -| | .+-. -+..+.+++.++++|+-.=+...|..++.-+.
T Consensus 74 PlVADIHFd-~~lAl~-a~~~g~dkiRI-------NP---G-Nig~--~e~v~~vv~~ak~~~ipIRIGVN~GSL~~~~~ 138 (346)
T TIGR00612 74 PLVADIHFD-YRLAAL-AMAKGVAKVRI-------NP---G-NIGF--RERVRDVVEKARDHGKAMRIGVNHGSLERRLL 138 (346)
T ss_pred CEEEeeCCC-cHHHHH-HHHhccCeEEE-------CC---C-CCCC--HHHHHHHHHHHHHCCCCEEEecCCCCCcHHHH
Confidence 445666775 444333 34678888875 33 4 3322 36789999999999999999999999999999
Q ss_pred hhcCCCCCHHHHHHHHHHHHHHH
Q 017199 149 ESMGGWLNKEIVKYFEIYADTCF 171 (375)
Q Consensus 149 ~~~gg~~~~~~~~~f~~ya~~~~ 171 (375)
++||+-+....++--.++++.|-
T Consensus 139 ~kyg~~t~eamveSAl~~v~~le 161 (346)
T TIGR00612 139 EKYGDATAEAMVQSALEEAAILE 161 (346)
T ss_pred HHcCCCCHHHHHHHHHHHHHHHH
Confidence 99876444556666666666543
No 118
>PRK12568 glycogen branching enzyme; Provisional
Probab=45.02 E-value=33 Score=37.76 Aligned_cols=93 Identities=19% Similarity=0.260 Sum_probs=56.5
Q ss_pred ccCcHHH-HHHHHHcCCCeEEec--------cccc-------ccccCCCCCcCChhHHHHHHHHHHHHHHcCCeeEEEec
Q 017199 76 YHRYKED-IDLIAKLGFDAYRFS--------ISWS-------RIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLY 139 (375)
Q Consensus 76 ~~~y~eD-i~l~~~lG~~~~R~s--------i~W~-------ri~P~~~g~~~n~~~l~~y~~~i~~l~~~gi~p~vtL~ 139 (375)
|.-..+. |+-+++||++++=+. -+|- .+.|.- | ..+-++.+|++|.++||.+|+.+.
T Consensus 268 ~~~la~~ll~ylk~LGvt~I~LmPi~e~~~~~~wGY~~~~~~a~~~~~-G------~~~dfk~lV~~~H~~Gi~VIlD~V 340 (730)
T PRK12568 268 WPTLAEQLIPYVQQLGFTHIELLPITEHPFGGSWGYQPLGLYAPTARH-G------SPDGFAQFVDACHRAGIGVILDWV 340 (730)
T ss_pred HHHHHHHHHHHHHHcCCCEEEECccccCCCCCCCCCCCCcCCccCccc-C------CHHHHHHHHHHHHHCCCEEEEEec
Confidence 3333344 688999999998543 2341 111211 3 235589999999999999999864
Q ss_pred --cCCCc-----------hhHHh--h---cCC-------CCCHHHHHHHHHHHHHHHHHcC
Q 017199 140 --HWDLP-----------LHLHE--S---MGG-------WLNKEIVKYFEIYADTCFASFG 175 (375)
Q Consensus 140 --H~~~P-----------~~l~~--~---~gg-------~~~~~~~~~f~~ya~~~~~~~~ 175 (375)
|+..- .+-.. . +.. +.++++.+.+.+=+..-+++|+
T Consensus 341 ~nH~~~d~~~l~~fdg~~~Ye~~d~~~g~~~~W~~~~~N~~~peVr~~li~~a~~Wl~eyh 401 (730)
T PRK12568 341 SAHFPDDAHGLAQFDGAALYEHADPREGMHRDWNTLIYNYGRPEVTAYLLGSALEWIEHYH 401 (730)
T ss_pred cccCCccccccccCCCccccccCCCcCCccCCCCCeecccCCHHHHHHHHHHHHHHHHHhC
Confidence 43211 01000 0 011 3457777888887777777776
No 119
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=44.48 E-value=1.1e+02 Score=29.30 Aligned_cols=84 Identities=12% Similarity=0.102 Sum_probs=59.5
Q ss_pred cHHHHHHHHHcCCCeEEecccccccccCC-CCCcCChhHHHHHHHHHHHHHHcCCeeEEEec-cCCCchhHHhhcCCCCC
Q 017199 79 YKEDIDLIAKLGFDAYRFSISWSRIFPDG-LGTKINMEGITFYNNIIDALLQKGIQPYVTLY-HWDLPLHLHESMGGWLN 156 (375)
Q Consensus 79 y~eDi~l~~~lG~~~~R~si~W~ri~P~~-~g~~~n~~~l~~y~~~i~~l~~~gi~p~vtL~-H~~~P~~l~~~~gg~~~ 156 (375)
-.+|++...+.|++.+++.++=|.+.-.. -+ .=-++.++...+.++.+++.|+++.+++. .|+.| +.|-.
T Consensus 75 ~~~dv~~A~~~g~~~i~i~~~~Sd~~~~~~~~-~s~~~~~~~~~~~v~~ak~~G~~v~~~i~~~f~~~------~~~~~- 146 (274)
T cd07938 75 NLRGAERALAAGVDEVAVFVSASETFSQKNIN-CSIAESLERFEPVAELAKAAGLRVRGYVSTAFGCP------YEGEV- 146 (274)
T ss_pred CHHHHHHHHHcCcCEEEEEEecCHHHHHHHcC-CCHHHHHHHHHHHHHHHHHCCCeEEEEEEeEecCC------CCCCC-
Confidence 47899999999999999998765543221 12 22246788999999999999999998876 34444 23323
Q ss_pred HHHHHHHHHHHHHHHH
Q 017199 157 KEIVKYFEIYADTCFA 172 (375)
Q Consensus 157 ~~~~~~f~~ya~~~~~ 172 (375)
..+.+.++++.+.+
T Consensus 147 --~~~~~~~~~~~~~~ 160 (274)
T cd07938 147 --PPERVAEVAERLLD 160 (274)
T ss_pred --CHHHHHHHHHHHHH
Confidence 35667777777654
No 120
>cd06542 GH18_EndoS-like Endo-beta-N-acetylglucosaminidases are bacterial chitinases that hydrolyze the chitin core of various asparagine (N)-linked glycans and glycoproteins. The endo-beta-N-acetylglucosaminidases have a glycosyl hydrolase family 18 (GH18) catalytic domain. Some members also have an additional C-terminal glycosyl hydrolase family 20 (GH20) domain while others have an N-terminal domain of unknown function (pfam08522). Members of this family include endo-beta-N-acetylglucosaminidase S (EndoS) from Streptococcus pyogenes, EndoF1, EndoF2, EndoF3, and EndoH from Flavobacterium meningosepticum, and EndoE from Enterococcus faecalis. EndoS is a secreted endoglycosidase from Streptococcus pyogenes that specifically hydrolyzes the glycan on human IgG between two core N-acetylglucosamine residues. EndoE is a secreted endoglycosidase, encoded by the ndoE gene in Enterococcus faecalis, that hydrolyzes the glycan on human RNase B.
Probab=44.15 E-value=87 Score=29.20 Aligned_cols=55 Identities=16% Similarity=0.186 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHcCCeeEEEeccCCCchhHHhhcCCCCCHHHHHHHHHHHHHHHHHcC
Q 017199 117 ITFYNNIIDALLQKGIQPYVTLYHWDLPLHLHESMGGWLNKEIVKYFEIYADTCFASFG 175 (375)
Q Consensus 117 l~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~gg~~~~~~~~~f~~ya~~~~~~~~ 175 (375)
++...+.|..|+++|+++++++.-+.....+ ....+++..+.|++-+..++++||
T Consensus 50 ~~~~~~~i~~l~~kG~KVl~sigg~~~~~~~----~~~~~~~~~~~fa~~l~~~v~~yg 104 (255)
T cd06542 50 LTNKETYIRPLQAKGTKVLLSILGNHLGAGF----ANNLSDAAAKAYAKAIVDTVDKYG 104 (255)
T ss_pred hHHHHHHHHHHhhCCCEEEEEECCCCCCCCc----cccCCHHHHHHHHHHHHHHHHHhC
Confidence 3567889999999999999999754433211 012455666777777766777776
No 121
>PF01055 Glyco_hydro_31: Glycosyl hydrolases family 31 ; InterPro: IPR000322 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 31 GH31 from CAZY comprises enzymes with several known activities; alpha-glucosidase (3.2.1.20 from EC), alpha-galactosidase (3.2.1.22 from EC); glucoamylase (3.2.1.3 from EC), sucrase-isomaltase (3.2.1.48 from EC); isomaltase (3.2.1.10 from EC); alpha-xylosidase (3.2.1 from EC); alpha-glucan lyase (4.2.2.13 from EC). Glycoside hydrolase family 31 groups a number of glycosyl hydrolases on the basis of sequence similarities [, , ] An aspartic acid has been implicated [] in the catalytic activity of sucrase, isomaltase, and lysosomal alpha-glucosidase.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3L4U_A 3L4X_A 3L4W_A 3L4V_A 3CTT_A 2QMJ_A 2QLY_A 3L4Z_A 3L4Y_A 3L4T_A ....
Probab=43.98 E-value=1.2e+02 Score=30.85 Aligned_cols=108 Identities=19% Similarity=0.239 Sum_probs=66.2
Q ss_pred cHHHHHHHHHcCCC--eEEecccccccccCCCCCcCChhHHHHHHHHHHHHHHcCCeeEEEeccC---CCc---hhHHhh
Q 017199 79 YKEDIDLIAKLGFD--AYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHW---DLP---LHLHES 150 (375)
Q Consensus 79 y~eDi~l~~~lG~~--~~R~si~W~ri~P~~~g~~~n~~~l~~y~~~i~~l~~~gi~p~vtL~H~---~~P---~~l~~~ 150 (375)
..+-++.+++.|+- ++=++..|..-... - .+|.+.+.-..++++.|+++|++.++.++-+ +.+ ..-..+
T Consensus 45 v~~~i~~~~~~~iP~d~~~iD~~~~~~~~~--f-~~d~~~FPd~~~~~~~l~~~G~~~~~~~~P~v~~~~~~~~~~~~~~ 121 (441)
T PF01055_consen 45 VREVIDRYRSNGIPLDVIWIDDDYQDGYGD--F-TWDPERFPDPKQMIDELHDQGIKVVLWVHPFVSNDSPDYENYDEAK 121 (441)
T ss_dssp HHHHHHHHHHTT--EEEEEE-GGGSBTTBT--T--B-TTTTTTHHHHHHHHHHTT-EEEEEEESEEETTTTB-HHHHHHH
T ss_pred HHHHHHHHHHcCCCccceeccccccccccc--c-ccccccccchHHHHHhHhhCCcEEEEEeecccCCCCCcchhhhhHh
Confidence 45567778887776 44455556553221 2 5666555567999999999999988876522 222 111110
Q ss_pred ---c-----CC----------------CCCHHHHHHHHHHHHHHHHHcCCCcceEEeccccchh
Q 017199 151 ---M-----GG----------------WLNKEIVKYFEIYADTCFASFGDRVKNWITINEPLQT 190 (375)
Q Consensus 151 ---~-----gg----------------~~~~~~~~~f~~ya~~~~~~~~d~V~~w~t~NEp~~~ 190 (375)
+ .| |.+++..+.|.+..+.+.+.+|= --+|+=+|||..+
T Consensus 122 ~~~~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~~~~~Gv-dg~w~D~~E~~~~ 184 (441)
T PF01055_consen 122 EKGYLVKNPDGSPYIGRVWPGKGGFIDFTNPEARDWWKEQLKELLDDYGV-DGWWLDFGEPSSF 184 (441)
T ss_dssp HTT-BEBCTTSSB-EEEETTEEEEEB-TTSHHHHHHHHHHHHHHHTTST--SEEEEESTTTBSS
T ss_pred hcCceeecccCCcccccccCCcccccCCCChhHHHHHHHHHHHHHhccCC-ceEEeecCCcccc
Confidence 0 12 78899999998888887777653 2568999999974
No 122
>KOG1065 consensus Maltase glucoamylase and related hydrolases, glycosyl hydrolase family 31 [Carbohydrate transport and metabolism]
Probab=43.91 E-value=1.1e+02 Score=34.04 Aligned_cols=103 Identities=17% Similarity=0.296 Sum_probs=66.4
Q ss_pred HHHHHHcCCC--eEEecccccccccCCCCCcCChhHHHHHHHHHHHHHHcCCeeEEEec---cCCCc-----------hh
Q 017199 83 IDLIAKLGFD--AYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLY---HWDLP-----------LH 146 (375)
Q Consensus 83 i~l~~~lG~~--~~R~si~W~ri~P~~~g~~~n~~~l~~y~~~i~~l~~~gi~p~vtL~---H~~~P-----------~~ 146 (375)
++.+.++|+. ..=..|+|-.-..+ = .+|....-...++++.|+++|++.++++. +-+.. .|
T Consensus 317 v~~~~~agiPld~~~~DiDyMd~ykD--F-Tvd~~~fp~~~~fv~~Lh~~G~kyvliidP~is~~~~y~~y~~g~~~~v~ 393 (805)
T KOG1065|consen 317 VENYRAAGIPLDVIVIDIDYMDGYKD--F-TVDKVWFPDLKDFVDDLHARGFKYVLIIDPFISTNSSYGPYDRGVAKDVL 393 (805)
T ss_pred HHHHHHcCCCcceeeeehhhhhcccc--e-eeccccCcchHHHHHHHHhCCCeEEEEeCCccccCccchhhhhhhhhcee
Confidence 5677788877 66666666433322 2 56666666789999999999999999886 22222 00
Q ss_pred HHhh----------cCC------CCCHHHHHHHHHHHHHHHHHcCCCcc---eEEeccccchhhc
Q 017199 147 LHES----------MGG------WLNKEIVKYFEIYADTCFASFGDRVK---NWITINEPLQTAV 192 (375)
Q Consensus 147 l~~~----------~gg------~~~~~~~~~f~~ya~~~~~~~~d~V~---~w~t~NEp~~~~~ 192 (375)
+.+. ..| ++|+++++.+ ...+++|.+.|. +|+-+|||.-...
T Consensus 394 I~~~~g~~~~lg~vwP~~~~fpDftnp~~~~Ww----~~~~~~fh~~vp~dg~wiDmnE~snf~~ 454 (805)
T KOG1065|consen 394 IKNREGSPKMLGEVWPGSTAFPDFTNPAVVEWW----LDELKRFHDEVPFDGFWIDMNEPSNFPS 454 (805)
T ss_pred eecccCchhhhcccCCCcccccccCCchHHHHH----HHHHHhhcccCCccceEEECCCcccCCC
Confidence 0000 012 5667666544 345668888776 6999999976653
No 123
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=43.81 E-value=94 Score=32.18 Aligned_cols=93 Identities=12% Similarity=0.005 Sum_probs=59.3
Q ss_pred HHHHHHHHHcCCCeEEecccccccccCCCCCcCChhHHHHHHHHHHHHHHcCCeeEEEeccCCCch----hHHh---h--
Q 017199 80 KEDIDLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLPL----HLHE---S-- 150 (375)
Q Consensus 80 ~eDi~l~~~lG~~~~R~si~W~ri~P~~~g~~~n~~~l~~y~~~i~~l~~~gi~p~vtL~H~~~P~----~l~~---~-- 150 (375)
++|++...+.|++.+|+.++-+.+ ....+.|+.+++.|+.+.+++..-+.|. .+.+ +
T Consensus 99 ~~~v~~A~~~Gvd~irif~~lnd~--------------~n~~~~v~~ak~~G~~v~~~i~~t~~p~~~~~~~~~~a~~l~ 164 (448)
T PRK12331 99 ESFVQKSVENGIDIIRIFDALNDV--------------RNLETAVKATKKAGGHAQVAISYTTSPVHTIDYFVKLAKEMQ 164 (448)
T ss_pred HHHHHHHHHCCCCEEEEEEecCcH--------------HHHHHHHHHHHHcCCeEEEEEEeecCCCCCHHHHHHHHHHHH
Confidence 556799999999999999864433 1256688889999988887776655562 1111 1
Q ss_pred -----------cCCCCCHHHHHHHHHHHHHHHHHcCCCcceEEeccccchh
Q 017199 151 -----------MGGWLNKEIVKYFEIYADTCFASFGDRVKNWITINEPLQT 190 (375)
Q Consensus 151 -----------~gg~~~~~~~~~f~~ya~~~~~~~~d~V~~w~t~NEp~~~ 190 (375)
-.|..+|. ...+.++.+-++++ ..-.+.+-|-..+.
T Consensus 165 ~~Gad~I~i~Dt~G~l~P~---~v~~lv~alk~~~~-~pi~~H~Hnt~GlA 211 (448)
T PRK12331 165 EMGADSICIKDMAGILTPY---VAYELVKRIKEAVT-VPLEVHTHATSGIA 211 (448)
T ss_pred HcCCCEEEEcCCCCCCCHH---HHHHHHHHHHHhcC-CeEEEEecCCCCcH
Confidence 04555654 33445666666664 22346677776653
No 124
>TIGR01211 ELP3 histone acetyltransferase, ELP3 family. The Saccharomyces cerevisiae member YPL086C has been characterized in vitro as an N-terminal acetyltransferase for all four core histones. It is a component of the RNA polymerase II holoenzyme, designated Elp3p for Elongator Protein 3. Members of this family are found in eukaryotes and archaea. These proteins are part of the larger set of GNAT acetyltransferases.
Probab=43.09 E-value=94 Score=32.85 Aligned_cols=107 Identities=18% Similarity=0.165 Sum_probs=68.3
Q ss_pred cHHHHHHHHHcCCCeEEeccc--ccccccC-CCCCcCChhHHHHHHHHHHHHHHcCCeeEEEeccCCCchhHHhhcCCCC
Q 017199 79 YKEDIDLIAKLGFDAYRFSIS--WSRIFPD-GLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLPLHLHESMGGWL 155 (375)
Q Consensus 79 y~eDi~l~~~lG~~~~R~si~--W~ri~P~-~~g~~~n~~~l~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~gg~~ 155 (375)
-++.+++|+++|++.+=+++. -.++.-. +.| . .++-..+.++.+++.|+++.+.|. +++|.
T Consensus 205 ~~e~L~~L~~~G~~rVslGVQS~~d~VL~~inRg--h---t~~~v~~Ai~~lr~~G~~v~~~LM-~GLPg---------- 268 (522)
T TIGR01211 205 REEHIDRMLKLGATRVELGVQTIYNDILERTKRG--H---TVRDVVEATRLLRDAGLKVVYHIM-PGLPG---------- 268 (522)
T ss_pred CHHHHHHHHHcCCCEEEEECccCCHHHHHHhCCC--C---CHHHHHHHHHHHHHcCCeEEEEee-cCCCC----------
Confidence 368899999999997777773 3333322 112 2 235567888899999998777775 46662
Q ss_pred CHHHHHHHHHHHHHHHH--HcC-CCcceEEeccccchhhcccccccccCCC
Q 017199 156 NKEIVKYFEIYADTCFA--SFG-DRVKNWITINEPLQTAVNGYCTGIFAPG 203 (375)
Q Consensus 156 ~~~~~~~f~~ya~~~~~--~~~-d~V~~w~t~NEp~~~~~~gy~~g~~~p~ 203 (375)
++.+.+.+=++.+++ .++ |.|+.+-+.=.|+.....-|..|.|.|-
T Consensus 269 --qt~e~~~~t~~~l~~~~~l~pD~Ikiypl~V~~gT~L~~~~~~G~y~p~ 317 (522)
T TIGR01211 269 --SSFERDLEMFREIFEDPRFKPDMLKIYPTLVTRGTELYELWKRGEYKPY 317 (522)
T ss_pred --CCHHHHHHHHHHHHhccCCCcCEEEEecceeeCCCHHHHHHHcCCCCCC
Confidence 123445555555654 344 5677777666777655555667777664
No 125
>PRK14510 putative bifunctional 4-alpha-glucanotransferase/glycogen debranching enzyme; Provisional
Probab=43.07 E-value=41 Score=39.27 Aligned_cols=59 Identities=19% Similarity=0.243 Sum_probs=37.3
Q ss_pred HHHHHHHHcCCCeEEecccccccc-----cCC-C---C------CcCCh----hHHHHHHHHHHHHHHcCCeeEEEec
Q 017199 81 EDIDLIAKLGFDAYRFSISWSRIF-----PDG-L---G------TKINM----EGITFYNNIIDALLQKGIQPYVTLY 139 (375)
Q Consensus 81 eDi~l~~~lG~~~~R~si~W~ri~-----P~~-~---g------~~~n~----~~l~~y~~~i~~l~~~gi~p~vtL~ 139 (375)
+.|+-+++|||+++=+.=-..... +.+ . | ..++. ...+=+++||++|+++||++|+.+.
T Consensus 191 ~~i~yLk~LGvt~I~L~Pi~~~~~~~~~~~~g~~~yWGY~~~~yfa~dp~yg~~~~~efk~lV~~~H~~GI~VILDvV 268 (1221)
T PRK14510 191 EAISYLKKLGVSIVELNPIFASVDEHHLPQLGLSNYWGYNTVAFLAPDPRLAPGGEEEFAQAIKEAQSAGIAVILDVV 268 (1221)
T ss_pred hhHHHHHHcCCCEEEeCCccccCcccccccccCcCcCCCCCCCCCCcChhhccCcHHHHHHHHHHHHHCCCEEEEEEc
Confidence 568899999999986543221110 000 0 0 01111 1456689999999999999999753
No 126
>PRK14511 maltooligosyl trehalose synthase; Provisional
Probab=42.69 E-value=63 Score=36.29 Aligned_cols=56 Identities=23% Similarity=0.281 Sum_probs=41.7
Q ss_pred cCcHHHHHHHHHcCCCeEEecc---------------cccccccCCCCCcCChhHHHHHHHHHHHHHHcCCeeEEEec
Q 017199 77 HRYKEDIDLIAKLGFDAYRFSI---------------SWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLY 139 (375)
Q Consensus 77 ~~y~eDi~l~~~lG~~~~R~si---------------~W~ri~P~~~g~~~n~~~l~~y~~~i~~l~~~gi~p~vtL~ 139 (375)
....+-+.-+++||++++=+|= ++.+|.|.- | +.+-+++++++++++||.+|+.+.
T Consensus 20 ~~~~~~l~YL~~LGis~IyLsPi~~a~~gs~hGYdv~D~~~idp~l-G------t~e~f~~Lv~aah~~Gi~VIlDiV 90 (879)
T PRK14511 20 DDAAELVPYFADLGVSHLYLSPILAARPGSTHGYDVVDHTRINPEL-G------GEEGLRRLAAALRAHGMGLILDIV 90 (879)
T ss_pred HHHHHHhHHHHHcCCCEEEECcCccCCCCCCCCCCcCCCCCcCCCC-C------CHHHHHHHHHHHHHCCCEEEEEec
Confidence 3456778889999999885543 444555553 3 235689999999999999999863
No 127
>PF04914 DltD_C: DltD C-terminal region; InterPro: IPR006998 The dlt operon (dltA to dltD) of Lactobacillus rhamnosus 7469 encodes four proteins responsible for the esterification of lipoteichoic acid (LTA) by D-alanine. These esters play an important role in controlling the net anionic charge of the poly (GroP) moiety of LTA. DltA and DltC encode the D-alanine-D-alanyl carrier protein ligase (Dcl) and D-alanyl carrier protein (Dcp), respectively. Whereas the functions of DltA and DltC are defined, the functions of DltB and DltD are unknown. In vitro assays showed that DltD bound Dcp for ligation with D-alanine by Dcl in the presence of ATP. In contrast, the homologue of Dcp, the Escherichia coli acyl carrier protein (ACP), involved in fatty acid biosynthesis, was not bound to DltD and thus was not ligated with D-alanine. DltD also catalyzed the hydrolysis of the mischarged D-alanyl-ACP. The hydrophobic N-terminal sequence of DltD was required for anchoring the protein in the membrane. It is hypothesized that this membrane-associated DltD facilitates the binding of Dcp and Dcl for ligation of Dcp with D-alanine and that the resulting D-alanyl-Dcp is translocated to the primary site of D-alanylation []. These sequences contain the C-terminal region of DltD.; PDB: 3BMA_C.
Probab=42.56 E-value=93 Score=26.53 Aligned_cols=58 Identities=16% Similarity=0.068 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHcCCeeEEEeccCCCchhHHhhcCCCCCHHHHHHHHHHHHHHHHHcCCC
Q 017199 116 GITFYNNIIDALLQKGIQPYVTLYHWDLPLHLHESMGGWLNKEIVKYFEIYADTCFASFGDR 177 (375)
Q Consensus 116 ~l~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~gg~~~~~~~~~f~~ya~~~~~~~~d~ 177 (375)
..+=+.-+++.|++.|++|++.+.= -.+.|.. |-| .+++..+.|.+=.+..++++|=.
T Consensus 34 Ey~Dl~l~L~~~k~~g~~~lfVi~P-vNg~wyd--ytG-~~~~~r~~~y~kI~~~~~~~gf~ 91 (130)
T PF04914_consen 34 EYDDLQLLLDVCKELGIDVLFVIQP-VNGKWYD--YTG-LSKEMRQEYYKKIKYQLKSQGFN 91 (130)
T ss_dssp HHHHHHHHHHHHHHTT-EEEEEE-----HHHHH--HTT---HHHHHHHHHHHHHHHHTTT--
T ss_pred cHHHHHHHHHHHHHcCCceEEEecC-CcHHHHH--HhC-CCHHHHHHHHHHHHHHHHHCCCE
Confidence 3455788999999999999998841 0123432 455 46777888888888888888754
No 128
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=42.31 E-value=84 Score=29.81 Aligned_cols=58 Identities=22% Similarity=0.123 Sum_probs=42.8
Q ss_pred HHHHHHHHHcC----CCeEEecccccccccCC-CCCcCChhHHHHHHHHHHHHHHcCCeeEEEe
Q 017199 80 KEDIDLIAKLG----FDAYRFSISWSRIFPDG-LGTKINMEGITFYNNIIDALLQKGIQPYVTL 138 (375)
Q Consensus 80 ~eDi~l~~~lG----~~~~R~si~W~ri~P~~-~g~~~n~~~l~~y~~~i~~l~~~gi~p~vtL 138 (375)
.+|+++..+.| ++.+|+.++-+.+.-.. .+ .=-.+.++...++++.+++.|+++.++.
T Consensus 72 ~~~v~~a~~~~~~~~~~~i~i~~~~s~~~~~~~~~-~~~~~~~~~~~~~i~~a~~~G~~v~~~~ 134 (268)
T cd07940 72 KKDIDAAAEALKPAKVDRIHTFIATSDIHLKYKLK-KTREEVLERAVEAVEYAKSHGLDVEFSA 134 (268)
T ss_pred HhhHHHHHHhCCCCCCCEEEEEecCCHHHHHHHhC-CCHHHHHHHHHHHHHHHHHcCCeEEEee
Confidence 78999999999 99999987665443221 12 2123467888899999999999877655
No 129
>TIGR01212 radical SAM protein, TIGR01212 family. This uncharacterized protein family shows significant similarity to TIGR01211, a longer protein that is a histone acetyltransferase at its C-terminus and is a subunit of RNA polymerase II (in yeast). This family lacks the GNAT acetyltransferase domain.
Probab=42.12 E-value=1.6e+02 Score=28.56 Aligned_cols=73 Identities=14% Similarity=0.001 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHHcCCeeEEEeccCCCchhHHhhcCCCCCHHHHHHHHHHHHHHHHHcCCCcceEEeccccchhhccccc
Q 017199 117 ITFYNNIIDALLQKGIQPYVTLYHWDLPLHLHESMGGWLNKEIVKYFEIYADTCFASFGDRVKNWITINEPLQTAVNGYC 196 (375)
Q Consensus 117 l~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~gg~~~~~~~~~f~~ya~~~~~~~~d~V~~w~t~NEp~~~~~~gy~ 196 (375)
++-+.+.++.++++||++.+.+. +++|. . +.+.+.+=++.+.+.=-+.|+.....-+|+.....-|.
T Consensus 162 ~~~~~~ai~~l~~~gi~v~~~lI-~GlPg---------e---t~e~~~~t~~~l~~l~~d~i~i~~l~~~pgT~L~~~~~ 228 (302)
T TIGR01212 162 FACYVDAVKRARKRGIKVCSHVI-LGLPG---------E---DREEMMETAKIVSLLDVDGIKIHPLHVVKGTKMAKMYE 228 (302)
T ss_pred HHHHHHHHHHHHHcCCEEEEeEE-ECCCC---------C---CHHHHHHHHHHHHhcCCCEEEEEEEEecCCCHHHHHHH
Confidence 35678899999999999888765 35552 2 34556666666555434668888888888876655566
Q ss_pred ccccCC
Q 017199 197 TGIFAP 202 (375)
Q Consensus 197 ~g~~~p 202 (375)
.|.+.|
T Consensus 229 ~g~~~~ 234 (302)
T TIGR01212 229 KGELKT 234 (302)
T ss_pred cCCCCC
Confidence 666654
No 130
>cd06545 GH18_3CO4_chitinase The Bacteroides thetaiotaomicron protein represented by pdb structure 3CO4 is an uncharacterized bacterial member of the family 18 glycosyl hydrolases with homologs found in Flavobacterium, Stigmatella, and Pseudomonas.
Probab=41.87 E-value=92 Score=29.17 Aligned_cols=73 Identities=11% Similarity=0.044 Sum_probs=44.3
Q ss_pred cccccccccCCCCCcCChhHHHHHHHHHHHHHHcCCeeEEEeccCCCchhHHhhcCCCCCHHHHHHHHHHHHHHHHHcC
Q 017199 97 SISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLPLHLHESMGGWLNKEIVKYFEIYADTCFASFG 175 (375)
Q Consensus 97 si~W~ri~P~~~g~~~n~~~l~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~gg~~~~~~~~~f~~ya~~~~~~~~ 175 (375)
.+.|..+.+.|.- .+.. .......+++.++++|+++++++..+....... --.++...+.|++=+-..+++|+
T Consensus 27 ~~~f~~i~~~G~l-~~~~-~~~~~~~~~~~~~~~~~kvl~sigg~~~~~~~~----~~~~~~~r~~fi~~lv~~~~~~~ 99 (253)
T cd06545 27 NLAFANPDANGTL-NANP-VRSELNSVVNAAHAHNVKILISLAGGSPPEFTA----ALNDPAKRKALVDKIINYVVSYN 99 (253)
T ss_pred EEEEEEECCCCeE-EecC-cHHHHHHHHHHHHhCCCEEEEEEcCCCCCcchh----hhcCHHHHHHHHHHHHHHHHHhC
Confidence 3345555555421 1110 124567889999999999999997655432211 12456777777776666667765
No 131
>TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ. One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift.
Probab=41.68 E-value=1.4e+02 Score=30.74 Aligned_cols=60 Identities=13% Similarity=0.179 Sum_probs=40.8
Q ss_pred HHHHHHHHHcCCCeEEeccc-cc-ccccCCCCCcCChhHHHHHHHHHHHHHHcCCeeEEEeccCCCc
Q 017199 80 KEDIDLIAKLGFDAYRFSIS-WS-RIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLP 144 (375)
Q Consensus 80 ~eDi~l~~~lG~~~~R~si~-W~-ri~P~~~g~~~n~~~l~~y~~~i~~l~~~gi~p~vtL~H~~~P 144 (375)
+|.+++|+++|++.+-++++ -+ ++...- +...+ ++.+.+.++.++++||.+.+++. +++|
T Consensus 287 ~e~l~~l~~aG~~~v~iGiES~s~~~L~~~-~K~~~---~~~~~~~i~~~~~~Gi~v~~~~I-iGlP 348 (472)
T TIGR03471 287 YETLKVMKENGLRLLLVGYESGDQQILKNI-KKGLT---VEIARRFTRDCHKLGIKVHGTFI-LGLP 348 (472)
T ss_pred HHHHHHHHHcCCCEEEEcCCCCCHHHHHHh-cCCCC---HHHHHHHHHHHHHCCCeEEEEEE-EeCC
Confidence 56789999999998888883 32 222111 10122 35678899999999999888775 2445
No 132
>COG0366 AmyA Glycosidases [Carbohydrate transport and metabolism]
Probab=41.19 E-value=46 Score=33.97 Aligned_cols=51 Identities=24% Similarity=0.475 Sum_probs=37.6
Q ss_pred HHHHHHHHcCCCeEEecc--------------cccccccCCCCCcCChhHHHHHHHHHHHHHHcCCeeEEEe
Q 017199 81 EDIDLIAKLGFDAYRFSI--------------SWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTL 138 (375)
Q Consensus 81 eDi~l~~~lG~~~~R~si--------------~W~ri~P~~~g~~~n~~~l~~y~~~i~~l~~~gi~p~vtL 138 (375)
+-++.+++||++++=++= .+.+|.|.- | .++-.++++++++++||++++.+
T Consensus 33 ~~LdYl~~LGv~aiwl~Pi~~s~~~~~gY~~~Dy~~id~~~-G------t~~d~~~li~~~H~~gi~vi~D~ 97 (505)
T COG0366 33 EKLDYLKELGVDAIWLSPIFESPQADHGYDVSDYTKVDPHF-G------TEEDFKELVEEAHKRGIKVILDL 97 (505)
T ss_pred HhhhHHHHhCCCEEEeCCCCCCCccCCCccccchhhcCccc-C------CHHHHHHHHHHHHHCCCEEEEEe
Confidence 668899999999984332 233333321 3 45778999999999999999987
No 133
>cd06565 GH20_GcnA-like Glycosyl hydrolase family 20 (GH20) catalytic domain of N-acetyl-beta-D-glucosaminidase (GcnA, also known as BhsA) and related proteins. GcnA is an exoglucosidase which cleaves N-acetyl-beta-D-galactosamine (NAG) and N-acetyl-beta-D-galactosamine residues from 4-methylumbelliferylated (4MU) substrates, as well as cleaving NAG from chito-oligosaccharides (i.e. NAG polymers). In contrast, sulfated forms of the substrate are unable to be cleaved and act instead as mild competitive inhibitors. Additionally, the enzyme is known to be poisoned by several first-row transition metals as well as by mercury. GcnA forms a homodimer with subunits comprised of three domains, an N-terminal zincin-like domain, this central catalytic GH20 domain, and a C-terminal alpha helical domain. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=40.79 E-value=89 Score=30.34 Aligned_cols=62 Identities=23% Similarity=0.235 Sum_probs=45.1
Q ss_pred cHHHHHHHHHcCCCeEEecc----cccccccCC---CCCcCChhHHHHHHHHHHHHHHcCCeeEEEeccCCCchhHH
Q 017199 79 YKEDIDLIAKLGFDAYRFSI----SWSRIFPDG---LGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLPLHLH 148 (375)
Q Consensus 79 y~eDi~l~~~lG~~~~R~si----~W~ri~P~~---~g~~~n~~~l~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~ 148 (375)
.++-|++|+.+|+|.+-+=+ .++. .|.- .| .+..+. ++++++.++++||+++..+ |+|..+.
T Consensus 19 lk~~id~ma~~k~N~l~lhl~D~f~~~~-~p~~~~~~~-~yT~~e---i~ei~~yA~~~gI~vIPei---d~pGH~~ 87 (301)
T cd06565 19 LKKLLRLLALLGANGLLLYYEDTFPYEG-EPEVGRMRG-AYTKEE---IREIDDYAAELGIEVIPLI---QTLGHLE 87 (301)
T ss_pred HHHHHHHHHHcCCCEEEEEEecceecCC-CcccccCCC-CcCHHH---HHHHHHHHHHcCCEEEecC---CCHHHHH
Confidence 67789999999999887633 2321 2221 25 677644 6999999999999999987 6776654
No 134
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=40.70 E-value=1e+02 Score=33.12 Aligned_cols=93 Identities=14% Similarity=0.060 Sum_probs=59.2
Q ss_pred HHHHHHHHHcCCCeEEecccccccccCCCCCcCChhHHHHHHHHHHHHHHcCCeeEEEeccCCCc----hhHHhh-----
Q 017199 80 KEDIDLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLP----LHLHES----- 150 (375)
Q Consensus 80 ~eDi~l~~~lG~~~~R~si~W~ri~P~~~g~~~n~~~l~~y~~~i~~l~~~gi~p~vtL~H~~~P----~~l~~~----- 150 (375)
++|++...+.|++.+|+..+.+.+ +-....++.++++|+.+.+++.+-+.| ..+.+.
T Consensus 94 ~~~v~~a~~~Gvd~irif~~lnd~--------------~n~~~~i~~ak~~G~~v~~~i~~t~~p~~~~~~~~~~~~~~~ 159 (582)
T TIGR01108 94 ERFVKKAVENGMDVFRIFDALNDP--------------RNLQAAIQAAKKHGAHAQGTISYTTSPVHTLETYLDLAEELL 159 (582)
T ss_pred HHHHHHHHHCCCCEEEEEEecCcH--------------HHHHHHHHHHHHcCCEEEEEEEeccCCCCCHHHHHHHHHHHH
Confidence 445899999999999998765432 235667788888888888877655555 221110
Q ss_pred -----------cCCCCCHHHHHHHHHHHHHHHHHcCCCcceEEeccccchh
Q 017199 151 -----------MGGWLNKEIVKYFEIYADTCFASFGDRVKNWITINEPLQT 190 (375)
Q Consensus 151 -----------~gg~~~~~~~~~f~~ya~~~~~~~~d~V~~w~t~NEp~~~ 190 (375)
-.|...|. ...+.++.+-++++ ..-...+.|-..+.
T Consensus 160 ~~Gad~I~i~Dt~G~~~P~---~v~~lv~~lk~~~~-~pi~~H~Hnt~Gla 206 (582)
T TIGR01108 160 EMGVDSICIKDMAGILTPK---AAYELVSALKKRFG-LPVHLHSHATTGMA 206 (582)
T ss_pred HcCCCEEEECCCCCCcCHH---HHHHHHHHHHHhCC-CceEEEecCCCCcH
Confidence 03455554 34455666666775 22347788877764
No 135
>TIGR01232 lacD tagatose 1,6-diphosphate aldolase. This family consists of Gram-positive proteins. Tagatose 1,6-diphosphate aldolase is part of the tagatose-6-phosphate pathway of galactose-6-phosphate degradation.
Probab=40.46 E-value=1.3e+02 Score=29.76 Aligned_cols=59 Identities=15% Similarity=0.294 Sum_probs=49.3
Q ss_pred HHHHHHHcCCCeEEecccccccccCCCCCcCChhHHHHHHHHHHHHHHcCCeeEEEeccCCCc
Q 017199 82 DIDLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLP 144 (375)
Q Consensus 82 Di~l~~~lG~~~~R~si~W~ri~P~~~g~~~n~~~l~~y~~~i~~l~~~gi~p~vtL~H~~~P 144 (375)
+.+.++++|.+++.|=+-|. |+.+- .+|..-.++.+++.++|++.+|--++-+..+|.+
T Consensus 111 s~~rike~GadavK~Llyy~---pD~~~-ein~~k~a~vervg~ec~a~dipf~lE~ltYd~~ 169 (325)
T TIGR01232 111 SAKRLKEQGANAVKFLLYYD---VDDAE-EINIQKKAYIERIGSECVAEDIPFFLEVLTYDDN 169 (325)
T ss_pred cHHHHHHhCCCeEEEEEEeC---CCCCh-HHHHHHHHHHHHHHHHHHHCCCCeEEEEeccCCC
Confidence 37889999999999998874 33323 6888889999999999999999999988876654
No 136
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=38.78 E-value=88 Score=29.00 Aligned_cols=65 Identities=17% Similarity=0.196 Sum_probs=41.1
Q ss_pred cCcHHHHHHHHHcCCCeEEecccccccccCCCC-CcCChhHHHHHHHHHHHHHHcCCeeEEEe-ccCCCc
Q 017199 77 HRYKEDIDLIAKLGFDAYRFSISWSRIFPDGLG-TKINMEGITFYNNIIDALLQKGIQPYVTL-YHWDLP 144 (375)
Q Consensus 77 ~~y~eDi~l~~~lG~~~~R~si~W~ri~P~~~g-~~~n~~~l~~y~~~i~~l~~~gi~p~vtL-~H~~~P 144 (375)
..+++=|++++++|.+.+|+..... |.... .+.....++...++.+.+.+.||...+=. .+++.|
T Consensus 84 ~~~~~~i~~a~~lg~~~i~~~~g~~---~~~~~~~~~~~~~~~~l~~l~~~A~~~gi~l~lE~~~~~~~~ 150 (254)
T TIGR03234 84 EGVALAIAYARALGCPQVNCLAGKR---PAGVSPEEARATLVENLRYAADALDRIGLTLLIEPINSFDMP 150 (254)
T ss_pred HHHHHHHHHHHHhCCCEEEECcCCC---CCCCCHHHHHHHHHHHHHHHHHHHHhcCCEEEEEECCcccCC
Confidence 4566678999999999998644321 11100 01223345668888888999999988743 444444
No 137
>TIGR02401 trehalose_TreY malto-oligosyltrehalose synthase. This enzyme, formally named (1-4)-alpha-D-glucan 1-alpha-D-glucosylmutase, is the TreY enzyme of the TreYZ pathway of trehalose biosynthesis, an alternative to the OtsAB pathway. Trehalose may be incorporated into more complex compounds but is best known as compatible solute. It is one of the most effective osmoprotectants, and unlike the various betaines does not require nitrogen for its synthesis.
Probab=38.74 E-value=61 Score=36.17 Aligned_cols=56 Identities=20% Similarity=0.220 Sum_probs=41.3
Q ss_pred cCcHHHHHHHHHcCCCeEEecccc---------------cccccCCCCCcCChhHHHHHHHHHHHHHHcCCeeEEEec
Q 017199 77 HRYKEDIDLIAKLGFDAYRFSISW---------------SRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLY 139 (375)
Q Consensus 77 ~~y~eDi~l~~~lG~~~~R~si~W---------------~ri~P~~~g~~~n~~~l~~y~~~i~~l~~~gi~p~vtL~ 139 (375)
....+-++-+++|||+++=+|=-+ .+|.|.- | +.+-+++++++++++||.+|+.+.
T Consensus 16 ~~~~~~L~YL~~LGv~~V~lsPi~~a~~gs~hGYdv~D~~~idp~l-G------t~edf~~Lv~aah~~Gm~vIlDiV 86 (825)
T TIGR02401 16 DDAAALLPYLKSLGVSHLYLSPILTAVPGSTHGYDVVDHSEINPEL-G------GEEGLRRLSEAARARGLGLIVDIV 86 (825)
T ss_pred HHHHHhhHHHHHcCCCEEEeCcCccCCCCCCCCCCCCCCCCcCCCC-C------CHHHHHHHHHHHHHCCCEEEEEec
Confidence 345677899999999998665433 2333332 3 345689999999999999999863
No 138
>PRK09936 hypothetical protein; Provisional
Probab=38.11 E-value=2.5e+02 Score=27.42 Aligned_cols=62 Identities=23% Similarity=0.381 Sum_probs=45.6
Q ss_pred cHHHHHHHHHcCCCeEEecccccccccCCCCCcCChhHHHHHHHHHHHHHHcCCeeEEEeccCCCchhHHh
Q 017199 79 YKEDIDLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLPLHLHE 149 (375)
Q Consensus 79 y~eDi~l~~~lG~~~~R~si~W~ri~P~~~g~~~n~~~l~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~ 149 (375)
|++=++.++.+|+++. =+.|++.--+.-| .-+ ....+.++.+.+.||+++|.|+ +| |.|+..
T Consensus 40 Wq~~~~~~~~~G~~tL--ivQWt~yG~~~fg-~~~----g~La~~l~~A~~~Gl~v~vGL~-~D-p~y~q~ 101 (296)
T PRK09936 40 WQGLWSQLRLQGFDTL--VVQWTRYGDADFG-GQR----GWLAKRLAAAQQAGLKLVVGLY-AD-PEFFMH 101 (296)
T ss_pred HHHHHHHHHHcCCcEE--EEEeeeccCCCcc-cch----HHHHHHHHHHHHcCCEEEEccc-CC-hHHHHH
Confidence 5555889999999985 4589888211112 112 5789999999999999999997 56 777654
No 139
>PRK01060 endonuclease IV; Provisional
Probab=37.88 E-value=1.6e+02 Score=27.58 Aligned_cols=51 Identities=14% Similarity=0.139 Sum_probs=36.6
Q ss_pred cHHHHHHHHHcCCCeEEecccccccccCCCCCcCChhHHHHHHHHHHHHHHcCCeeE
Q 017199 79 YKEDIDLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPY 135 (375)
Q Consensus 79 y~eDi~l~~~lG~~~~R~si~W~ri~P~~~g~~~n~~~l~~y~~~i~~l~~~gi~p~ 135 (375)
+++-++.++++|++.+=+.+.-++.... + .++.+ ..+++-+.+.++||++.
T Consensus 14 ~~~~l~~~~~~G~d~vEl~~~~p~~~~~--~-~~~~~---~~~~lk~~~~~~gl~~~ 64 (281)
T PRK01060 14 LEGAVAEAAEIGANAFMIFTGNPQQWKR--K-PLEEL---NIEAFKAACEKYGISPE 64 (281)
T ss_pred HHHHHHHHHHcCCCEEEEECCCCCCCcC--C-CCCHH---HHHHHHHHHHHcCCCCC
Confidence 6788999999999999998765554432 2 45553 34556666779999853
No 140
>PF10107 Endonuc_Holl: Endonuclease related to archaeal Holliday junction resolvase; InterPro: IPR019287 This domain is found in various predicted bacterial endonucleases which are distantly related to archaeal Holliday junction resolvases.
Probab=36.97 E-value=21 Score=31.33 Aligned_cols=42 Identities=17% Similarity=0.287 Sum_probs=31.5
Q ss_pred ceecCCCchHHHhhhccCCCCCCHhHHHHhcCCCcEEEEccccc
Q 017199 278 PIYYGDYPEVMRNNLGDQLPKFMQKDKELVRNSLDFVGLNHYTS 321 (375)
Q Consensus 278 ~i~~G~YP~~~~~~l~~~~p~~t~ed~~~ikg~~DFiGiNYYts 321 (375)
++++|+..+-+..++- ..++.|.|...|..++|||.|+=++.
T Consensus 72 avl~Gkv~EqlaP~lp--~F~ynP~D~RFlG~PVD~IvF~Gls~ 113 (156)
T PF10107_consen 72 AVLKGKVSEQLAPFLP--EFPYNPKDARFLGSPVDFIVFDGLSD 113 (156)
T ss_pred HHHcchhHHHhhhccC--CCCCChhhheecCCCceEEEEcCCCC
Confidence 4457776666555541 23568999999999999999999976
No 141
>PLN02960 alpha-amylase
Probab=36.96 E-value=68 Score=36.00 Aligned_cols=95 Identities=9% Similarity=0.221 Sum_probs=58.9
Q ss_pred CcccCcHHH-HHHHHHcCCCeEEeccc--------c-------cccccCCCCCcCChhHHHHHHHHHHHHHHcCCeeEEE
Q 017199 74 DHYHRYKED-IDLIAKLGFDAYRFSIS--------W-------SRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVT 137 (375)
Q Consensus 74 ~~~~~y~eD-i~l~~~lG~~~~R~si~--------W-------~ri~P~~~g~~~n~~~l~~y~~~i~~l~~~gi~p~vt 137 (375)
..|.-..+. |+-+++||++++=+.=- | -.+.|.- | . .+=++.+|++|.++||.+|+.
T Consensus 413 gtf~~~~e~~LdYLk~LGvt~IeLmPv~e~~~~~swGY~~~~yfa~~~~y-G-t-----p~dfk~LVd~aH~~GI~VILD 485 (897)
T PLN02960 413 SSFKEFTQKVLPHVKKAGYNAIQLIGVQEHKDYSSVGYKVTNFFAVSSRF-G-T-----PDDFKRLVDEAHGLGLLVFLD 485 (897)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCCCccccc-C-C-----HHHHHHHHHHHHHCCCEEEEE
Confidence 345555444 89999999999876421 1 1111111 2 1 344899999999999999998
Q ss_pred ec--cCCC--chhHH--h-----------h--cCCC-------CCHHHHHHHHHHHHHHHHHcC
Q 017199 138 LY--HWDL--PLHLH--E-----------S--MGGW-------LNKEIVKYFEIYADTCFASFG 175 (375)
Q Consensus 138 L~--H~~~--P~~l~--~-----------~--~gg~-------~~~~~~~~f~~ya~~~~~~~~ 175 (375)
+. |+.. +.-|. + . +..| .++++.+.+.+-++.-++.|+
T Consensus 486 vV~NH~~~d~~~~L~~FDG~~~~Yf~~~~~g~~~~WG~~~fNy~~~eVr~fLlsna~yWl~Eyh 549 (897)
T PLN02960 486 IVHSYAAADEMVGLSLFDGSNDCYFHSGKRGHHKRWGTRMFKYGDHEVLHFLLSNLNWWVTEYR 549 (897)
T ss_pred ecccccCCccccchhhcCCCccceeecCCCCccCCCCCcccCCCCHHHHHHHHHHHHHHHHHHC
Confidence 73 4321 10010 0 0 0112 357788888888888888887
No 142
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=36.78 E-value=4.1e+02 Score=25.95 Aligned_cols=40 Identities=33% Similarity=0.395 Sum_probs=32.3
Q ss_pred ccccCCCCCcCChhHHHHHHHHHHHHHHcCCeeEEEeccCC
Q 017199 102 RIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWD 142 (375)
Q Consensus 102 ri~P~~~g~~~n~~~l~~y~~~i~~l~~~gi~p~vtL~H~~ 142 (375)
+..|...+ -++.+-+..++++.+.++++|-..++=|+|..
T Consensus 62 ~~~~~~~~-~~~d~~~~~~~~l~~~vh~~G~~~~~QL~H~G 101 (336)
T cd02932 62 RITPGDLG-LWNDEQIEALKRIVDFIHSQGAKIGIQLAHAG 101 (336)
T ss_pred CCCCCcee-ecCHHHHHHHHHHHHHHHhcCCcEEEEccCCC
Confidence 44444335 66788899999999999999999999999953
No 143
>COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion]
Probab=36.23 E-value=1.7e+02 Score=30.11 Aligned_cols=57 Identities=23% Similarity=0.329 Sum_probs=42.1
Q ss_pred CcccCcHHH-----HHHHHHcCCCeEEecccccccccCCCCCcCChhHHHHHHHHHHHHHHcCCeeEEEeccCCCc
Q 017199 74 DHYHRYKED-----IDLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLP 144 (375)
Q Consensus 74 ~~~~~y~eD-----i~l~~~lG~~~~R~si~W~ri~P~~~g~~~n~~~l~~y~~~i~~l~~~gi~p~vtL~H~~~P 144 (375)
--|.+|.+| +++..+-|++.||.. . ..|. ++-...-|+..++.|.....++..=..|
T Consensus 90 vGYrhyaDDvVe~Fv~ka~~nGidvfRiF-----------D-AlND--~RNl~~ai~a~kk~G~h~q~~i~YT~sP 151 (472)
T COG5016 90 VGYRHYADDVVEKFVEKAAENGIDVFRIF-----------D-ALND--VRNLKTAIKAAKKHGAHVQGTISYTTSP 151 (472)
T ss_pred ccccCCchHHHHHHHHHHHhcCCcEEEec-----------h-hccc--hhHHHHHHHHHHhcCceeEEEEEeccCC
Confidence 357888888 577899999999953 2 3332 4557788899999999988888743344
No 144
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=35.60 E-value=63 Score=31.19 Aligned_cols=60 Identities=18% Similarity=0.324 Sum_probs=43.2
Q ss_pred HHHHHHHHHcCCCeEEecccccccccCCCCCcCChhHHHHHHHHHHHHHHcCCeeEEEeccCCCchhHHhhc
Q 017199 80 KEDIDLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLPLHLHESM 151 (375)
Q Consensus 80 ~eDi~l~~~lG~~~~R~si~W~ri~P~~~g~~~n~~~l~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~ 151 (375)
++-+++++++||+.+.++.- + .=+++.+++|+++++.+.+++| +|.+|--..|.-+...|
T Consensus 109 ~~~f~~~~~~Gv~GvKidF~---------~-~d~Q~~v~~y~~i~~~AA~~~L--mvnfHg~~kPtG~~RTy 168 (273)
T PF10566_consen 109 DEAFKLYAKWGVKGVKIDFM---------D-RDDQEMVNWYEDILEDAAEYKL--MVNFHGATKPTGLRRTY 168 (273)
T ss_dssp HHHHHHHHHCTEEEEEEE-----------S-STSHHHHHHHHHHHHHHHHTT---EEEETTS---TTHHHCS
T ss_pred HHHHHHHHHcCCCEEeeCcC---------C-CCCHHHHHHHHHHHHHHHHcCc--EEEecCCcCCCcccccC
Confidence 66699999999999998873 2 3467889999999999999976 66666555676655444
No 145
>PRK12677 xylose isomerase; Provisional
Probab=35.59 E-value=3.3e+02 Score=27.48 Aligned_cols=71 Identities=20% Similarity=0.212 Sum_probs=45.0
Q ss_pred cHHHHHHHHHcCCCeEEecccccccccCCCCCcCChhHHHHHHHHHHHHHHcCCeeE-EEeccCCCchhHHhhcCCCCCH
Q 017199 79 YKEDIDLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPY-VTLYHWDLPLHLHESMGGWLNK 157 (375)
Q Consensus 79 y~eDi~l~~~lG~~~~R~si~W~ri~P~~~g~~~n~~~l~~y~~~i~~l~~~gi~p~-vtL~H~~~P~~l~~~~gg~~~~ 157 (375)
..|-++.++++|++.+=+.. ..+.|-. - .... .-+..+++-+.+.++||++. ++...|..|.+ +.|++.++
T Consensus 33 ~~E~v~~~a~~Gf~gVElh~--~~l~p~~-~-~~~~-~~~~~~~lk~~l~~~GL~v~~v~~n~f~~p~~---~~g~lts~ 104 (384)
T PRK12677 33 PVEAVHKLAELGAYGVTFHD--DDLVPFG-A-TDAE-RDRIIKRFKKALDETGLVVPMVTTNLFTHPVF---KDGAFTSN 104 (384)
T ss_pred HHHHHHHHHHhCCCEEEecc--cccCCCC-C-Chhh-hHHHHHHHHHHHHHcCCeeEEEecCCCCCccc---cCCcCCCC
Confidence 57889999999999886632 2244432 1 1111 11357788888999999976 55544555543 23778774
No 146
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=35.38 E-value=3.1e+02 Score=26.51 Aligned_cols=142 Identities=16% Similarity=0.186 Sum_probs=76.3
Q ss_pred cccCCCCCcCChhHHHHHHHHHHHHHHcCCeeEEEeccCCC---chh----------HHhhcCCC----CC----HHHHH
Q 017199 103 IFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDL---PLH----------LHESMGGW----LN----KEIVK 161 (375)
Q Consensus 103 i~P~~~g~~~n~~~l~~y~~~i~~l~~~gi~p~vtL~H~~~---P~~----------l~~~~gg~----~~----~~~~~ 161 (375)
..|...| -++.+.+..++++++.++++|-..++=|.|... |.. ......+- .+ .++++
T Consensus 63 ~~~~~~~-~~~~~~~~~~~~~~~~vh~~g~~~~~Ql~h~G~~~~~~~~~~~~~~~s~~~~~~~~~~~~~mt~~ei~~~i~ 141 (327)
T cd02803 63 GYPGQLG-IYDDEQIPGLRKLTEAVHAHGAKIFAQLAHAGRQAQPNLTGGPPPAPSAIPSPGGGEPPREMTKEEIEQIIE 141 (327)
T ss_pred CCCCCcC-cCCHHHHHHHHHHHHHHHhCCCHhhHHhhCCCcCCCCcCCCCCccCCCCCCCCCCCCCCCcCCHHHHHHHHH
Confidence 3444336 678889999999999999999999999998532 100 00000000 11 34778
Q ss_pred HHHHHHHHHHHHcCCCcceEEeccccchhhccccccccc-CCCC---CCCCCchHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 017199 162 YFEIYADTCFASFGDRVKNWITINEPLQTAVNGYCTGIF-APGR---HQHSSTEPYLVAHHQILAHAAAFSVYQRKYKDK 237 (375)
Q Consensus 162 ~f~~ya~~~~~~~~d~V~~w~t~NEp~~~~~~gy~~g~~-~p~~---~~~~~~~~~~~~h~~llAHa~Av~~~k~~~~~~ 237 (375)
.|++-|+.+.+.=-|-|. +.+-.||+...| .|.. ....... +-|-..--.+.++.+|+.. .
T Consensus 142 ~~~~aA~~a~~aGfDgve---------ih~~~gyL~~qFlsp~~n~R~d~yGgs----~enr~r~~~eii~avr~~~--g 206 (327)
T cd02803 142 DFAAAARRAKEAGFDGVE---------IHGAHGYLLSQFLSPYTNKRTDEYGGS----LENRARFLLEIVAAVREAV--G 206 (327)
T ss_pred HHHHHHHHHHHcCCCEEE---------EcchhhhHHHHhcCccccCCCcccCCC----HHHHHHHHHHHHHHHHHHc--C
Confidence 888888776653223332 223356654332 2321 1100100 1122222345666666653 2
Q ss_pred CCceEEEEecCCccccCCCCHHH
Q 017199 238 QGGNIGLVVDCEWAEANSDKIED 260 (375)
Q Consensus 238 ~~~kVG~~~~~~~~~P~~~~~~D 260 (375)
++..||+-++.....+...++++
T Consensus 207 ~d~~i~vris~~~~~~~g~~~~e 229 (327)
T cd02803 207 PDFPVGVRLSADDFVPGGLTLEE 229 (327)
T ss_pred CCceEEEEechhccCCCCCCHHH
Confidence 35678888876554443334555
No 147
>PRK05904 coproporphyrinogen III oxidase; Provisional
Probab=35.16 E-value=1.7e+02 Score=29.11 Aligned_cols=94 Identities=14% Similarity=0.129 Sum_probs=55.5
Q ss_pred HHHHHHHHHcCCCeEEecc-cc-cccccCCCCCcCChhHHHHHHHHHHHHHHcCCe-eEEEeccCCCchhHHhhcCCCCC
Q 017199 80 KEDIDLIAKLGFDAYRFSI-SW-SRIFPDGLGTKINMEGITFYNNIIDALLQKGIQ-PYVTLYHWDLPLHLHESMGGWLN 156 (375)
Q Consensus 80 ~eDi~l~~~lG~~~~R~si-~W-~ri~P~~~g~~~n~~~l~~y~~~i~~l~~~gi~-p~vtL~H~~~P~~l~~~~gg~~~ 156 (375)
+|.+++|+++|++.+-+++ += .++...- |...+ .+-+.+.++.+++.|+. +-++|. +++|.
T Consensus 103 ~e~l~~lk~~G~nrisiGvQS~~d~vL~~l-~R~~~---~~~~~~ai~~lr~~G~~~v~~dlI-~GlPg----------- 166 (353)
T PRK05904 103 QSQINLLKKNKVNRISLGVQSMNNNILKQL-NRTHT---IQDSKEAINLLHKNGIYNISCDFL-YCLPI----------- 166 (353)
T ss_pred HHHHHHHHHcCCCEEEEecccCCHHHHHHc-CCCCC---HHHHHHHHHHHHHcCCCcEEEEEe-ecCCC-----------
Confidence 6889999999999666666 22 2222221 21223 35678899999999997 556654 45662
Q ss_pred HHHHHHHHHHHHHHHHHcCCCcceEEeccccchh
Q 017199 157 KEIVKYFEIYADTCFASFGDRVKNWITINEPLQT 190 (375)
Q Consensus 157 ~~~~~~f~~ya~~~~~~~~d~V~~w~t~NEp~~~ 190 (375)
++.+.|.+=.+.+.+.=-+.|..+...=||+..
T Consensus 167 -qt~e~~~~tl~~~~~l~p~~is~y~L~~~~gT~ 199 (353)
T PRK05904 167 -LKLKDLDEVFNFILKHKINHISFYSLEIKEGSI 199 (353)
T ss_pred -CCHHHHHHHHHHHHhcCCCEEEEEeeEecCCCh
Confidence 234455555554433222456555555566643
No 148
>PRK08208 coproporphyrinogen III oxidase; Validated
Probab=34.96 E-value=1.4e+02 Score=30.46 Aligned_cols=92 Identities=12% Similarity=0.170 Sum_probs=54.0
Q ss_pred cHHHHHHHHHcCCCeEEecc-cc-cccccCCCCCcCChhHHHHHHHHHHHHHHcCCeeE-EEeccCCCchhHHhhcCCCC
Q 017199 79 YKEDIDLIAKLGFDAYRFSI-SW-SRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPY-VTLYHWDLPLHLHESMGGWL 155 (375)
Q Consensus 79 y~eDi~l~~~lG~~~~R~si-~W-~ri~P~~~g~~~n~~~l~~y~~~i~~l~~~gi~p~-vtL~H~~~P~~l~~~~gg~~ 155 (375)
-++.+++|+++|++.+-+++ += .++...- |...+ .+-..+.|+.|++.|+..+ ++|. +++|. .
T Consensus 140 t~e~l~~l~~~G~~rvslGvQS~~~~~L~~l-~R~~~---~~~~~~ai~~l~~~g~~~i~~dlI-~GlP~---------q 205 (430)
T PRK08208 140 TAEKLALLAARGVNRLSIGVQSFHDSELHAL-HRPQK---RADVHQALEWIRAAGFPILNIDLI-YGIPG---------Q 205 (430)
T ss_pred CHHHHHHHHHcCCCEEEEecccCCHHHHHHh-CCCCC---HHHHHHHHHHHHHcCCCeEEEEee-cCCCC---------C
Confidence 46789999999999777776 33 2232221 21223 3567889999999999864 5554 46662 2
Q ss_pred CHHHHHHHHHHHHHHHHHcC-CCcceEEeccccc
Q 017199 156 NKEIVKYFEIYADTCFASFG-DRVKNWITINEPL 188 (375)
Q Consensus 156 ~~~~~~~f~~ya~~~~~~~~-d~V~~w~t~NEp~ 188 (375)
+ .+.|.+=.+.+.+ ++ +.+..+...=+|+
T Consensus 206 t---~e~~~~~l~~~~~-l~~~~is~y~L~~~~~ 235 (430)
T PRK08208 206 T---HASWMESLDQALV-YRPEELFLYPLYVRPL 235 (430)
T ss_pred C---HHHHHHHHHHHHh-CCCCEEEEccccccCC
Confidence 3 3444444444443 33 3455554444444
No 149
>PF04028 DUF374: Domain of unknown function (DUF374); InterPro: IPR007172 This is a bacterial domain of unknown function.
Probab=34.85 E-value=1.6e+02 Score=22.53 Aligned_cols=43 Identities=28% Similarity=0.440 Sum_probs=33.7
Q ss_pred HHHHHcCCCeEEecccccccccCCCCCcCChhHHHHHHHHHHHHHHcCCeeEEEeccCCCc
Q 017199 84 DLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLP 144 (375)
Q Consensus 84 ~l~~~lG~~~~R~si~W~ri~P~~~g~~~n~~~l~~y~~~i~~l~~~gi~p~vtL~H~~~P 144 (375)
+.++.+|+.++|-| .. .| +.+-+.++++.|+ .|..+.+|. |-|
T Consensus 27 ~~~~~~G~~~iRGS-------s~-rg------g~~Alr~~~~~lk-~G~~~~itp---DGP 69 (74)
T PF04028_consen 27 RVLERFGFRTIRGS-------SS-RG------GARALREMLRALK-EGYSIAITP---DGP 69 (74)
T ss_pred HHHHHcCCCeEEeC-------CC-Cc------HHHHHHHHHHHHH-CCCeEEEeC---CCC
Confidence 67899999999999 22 24 4677899999998 888887776 555
No 150
>PTZ00445 p36-lilke protein; Provisional
Probab=34.84 E-value=81 Score=29.39 Aligned_cols=56 Identities=16% Similarity=0.193 Sum_probs=41.2
Q ss_pred HHHHHHcCCCeEEecccccccccCCCCCcCChh---------HHHHHHHHHHHHHHcCCeeEEEec
Q 017199 83 IDLIAKLGFDAYRFSISWSRIFPDGLGTKINME---------GITFYNNIIDALLQKGIQPYVTLY 139 (375)
Q Consensus 83 i~l~~~lG~~~~R~si~W~ri~P~~~g~~~n~~---------~l~~y~~~i~~l~~~gi~p~vtL~ 139 (375)
++++++.|++++=+.++=+-|----.| -.++. +-.-+..++.+|+++||.++|..+
T Consensus 35 v~~L~~~GIk~Va~D~DnTlI~~HsgG-~~~~~~~~~~~~~~~tpefk~~~~~l~~~~I~v~VVTf 99 (219)
T PTZ00445 35 VDLLNECGIKVIASDFDLTMITKHSGG-YIDPDNDDIRVLTSVTPDFKILGKRLKNSNIKISVVTF 99 (219)
T ss_pred HHHHHHcCCeEEEecchhhhhhhhccc-ccCCCcchhhhhccCCHHHHHHHHHHHHCCCeEEEEEc
Confidence 688999999999999887766522113 33332 234578899999999999998775
No 151
>cd06525 GH25_Lyc-like Lyc muramidase is an autolytic lysozyme (autolysin) from Clostridium acetobutylicum encoded by the lyc gene. Lyc has a glycosyl hydrolase family 25 (GH25) catalytic domain. Endo-N-acetylmuramidases are lysozymes (also referred to as peptidoglycan hydrolases) that degrade bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues.
Probab=34.57 E-value=3.2e+02 Score=24.13 Aligned_cols=50 Identities=14% Similarity=0.398 Sum_probs=31.0
Q ss_pred HHHHHHHcCCCeEEecccccccccCCCCCcCChhHHHHHHHHHHHHHHcCCeeEEEeccCCCc
Q 017199 82 DIDLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLP 144 (375)
Q Consensus 82 Di~l~~~lG~~~~R~si~W~ri~P~~~g~~~n~~~l~~y~~~i~~l~~~gi~p~vtL~H~~~P 144 (375)
|.+.+|+.|++.+=+=+. +|.+ ..| ..|..-++.++++|| .+..+||..|
T Consensus 13 d~~~~k~~gi~fviiKat------eG~~-y~D----~~~~~~~~~a~~aGl--~~G~Yhy~~~ 62 (184)
T cd06525 13 NFNAVKDSGVEVVYIKAT------EGTT-FVD----SYFNENYNGAKAAGL--KVGFYHFLVG 62 (184)
T ss_pred CHHHHHhCCCeEEEEEec------CCCc-ccC----HhHHHHHHHHHHCCC--ceEEEEEeeC
Confidence 567777777664322221 2323 456 467888888888888 3577777654
No 152
>cd06568 GH20_SpHex_like A subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the N-acetylhexosaminidase from Streptomyces plicatus (SpHex). SpHex catalyzes the hydrolysis of N-acetyl-beta-hexosaminides. An Asp residue within the active site plays a critical role in substrate-assisted catalysis by orienting the 2-acetamido group and stabilizing the transition state. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself. Proteins belonging to this subgroup lack the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases.
Probab=34.49 E-value=1.5e+02 Score=29.21 Aligned_cols=64 Identities=22% Similarity=0.386 Sum_probs=45.4
Q ss_pred CcHHHHHHHHHcCCCeEEecc----cc-------cccccCC---------CCCcCChhHHHHHHHHHHHHHHcCCeeEEE
Q 017199 78 RYKEDIDLIAKLGFDAYRFSI----SW-------SRIFPDG---------LGTKINMEGITFYNNIIDALLQKGIQPYVT 137 (375)
Q Consensus 78 ~y~eDi~l~~~lG~~~~R~si----~W-------~ri~P~~---------~g~~~n~~~l~~y~~~i~~l~~~gi~p~vt 137 (375)
..++-|+.|+..++|.+-+-+ +| +.+-..+ .| .+.. +=++++++.++++||++|.-
T Consensus 19 ~lk~~id~ma~~KlN~lhlHLtD~~~~rle~~~~P~lt~~ga~~~~~~~~~~-~YT~---~di~elv~yA~~rgI~vIPE 94 (329)
T cd06568 19 EVKRYIDLLALYKLNVLHLHLTDDQGWRIEIKSWPKLTEIGGSTEVGGGPGG-YYTQ---EDYKDIVAYAAERHITVVPE 94 (329)
T ss_pred HHHHHHHHHHHhCCcEEEEEeecCCcceeeecCcccccccccccccCCCCCC-cCCH---HHHHHHHHHHHHcCCEEEEe
Confidence 356779999999999877655 23 3332211 02 3444 34799999999999999998
Q ss_pred eccCCCchhHH
Q 017199 138 LYHWDLPLHLH 148 (375)
Q Consensus 138 L~H~~~P~~l~ 148 (375)
+ |+|....
T Consensus 95 i---D~PGH~~ 102 (329)
T cd06568 95 I---DMPGHTN 102 (329)
T ss_pred c---CCcHHHH
Confidence 8 8887754
No 153
>cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of in
Probab=33.67 E-value=86 Score=29.95 Aligned_cols=80 Identities=11% Similarity=0.074 Sum_probs=54.4
Q ss_pred HHHHHHHHcCCCeEEecccccccccCC-CCCcCChhHHHHHHHHHHHHHHcCCeeEEEeccCCCchhHHhhcCCCCCHHH
Q 017199 81 EDIDLIAKLGFDAYRFSISWSRIFPDG-LGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLPLHLHESMGGWLNKEI 159 (375)
Q Consensus 81 eDi~l~~~lG~~~~R~si~W~ri~P~~-~g~~~n~~~l~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~gg~~~~~~ 159 (375)
.+++.+.+.|++.+|+.++=|...-.. .| .-.++.++...+.++.+++.|+++.++..+| .+ +... .
T Consensus 82 ~~~~~a~~~g~~~i~i~~~~sd~~~~~~~~-~~~~~~~~~~~~~i~~ak~~G~~v~~~~~~~------~d--~~~~---~ 149 (273)
T cd07941 82 PNLQALLEAGTPVVTIFGKSWDLHVTEALG-TTLEENLAMIRDSVAYLKSHGREVIFDAEHF------FD--GYKA---N 149 (273)
T ss_pred HHHHHHHhCCCCEEEEEEcCCHHHHHHHcC-CCHHHHHHHHHHHHHHHHHcCCeEEEeEEec------cc--cCCC---C
Confidence 689999999999999988654433221 12 2235678899999999999999998876655 11 1112 2
Q ss_pred HHHHHHHHHHHHH
Q 017199 160 VKYFEIYADTCFA 172 (375)
Q Consensus 160 ~~~f~~ya~~~~~ 172 (375)
.+.+.++++.+.+
T Consensus 150 ~~~~~~~~~~~~~ 162 (273)
T cd07941 150 PEYALATLKAAAE 162 (273)
T ss_pred HHHHHHHHHHHHh
Confidence 4555666666654
No 154
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=33.54 E-value=1.4e+02 Score=27.48 Aligned_cols=79 Identities=18% Similarity=0.119 Sum_probs=53.9
Q ss_pred HHHHHH----HHHcCCCeEEecccccccccCC-CCCcCChhHHHHHHHHHHHHHHcCCeeEEEeccCCCchhHHhhcCCC
Q 017199 80 KEDIDL----IAKLGFDAYRFSISWSRIFPDG-LGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLPLHLHESMGGW 154 (375)
Q Consensus 80 ~eDi~l----~~~lG~~~~R~si~W~ri~P~~-~g~~~n~~~l~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~gg~ 154 (375)
++|++. +++.|++.+|+.++=+...... -+ .--++.++...++++.+++.|+++.+++-+.. .
T Consensus 66 ~~~i~~~~~~~~~~g~~~i~i~~~~s~~~~~~~~~-~~~~~~~~~~~~~v~~ak~~g~~v~~~~~~~~-----------~ 133 (237)
T PF00682_consen 66 EEDIERAVEAAKEAGIDIIRIFISVSDLHIRKNLN-KSREEALERIEEAVKYAKELGYEVAFGCEDAS-----------R 133 (237)
T ss_dssp HHHHHHHHHHHHHTTSSEEEEEEETSHHHHHHHTC-SHHHHHHHHHHHHHHHHHHTTSEEEEEETTTG-----------G
T ss_pred HHHHHHHHHhhHhccCCEEEecCcccHHHHHHhhc-CCHHHHHHHHHHHHHHHHhcCCceEeCccccc-----------c
Confidence 455555 4569999999998765544332 12 22345788899999999999999988775421 1
Q ss_pred CCHHHHHHHHHHHHHHHHH
Q 017199 155 LNKEIVKYFEIYADTCFAS 173 (375)
Q Consensus 155 ~~~~~~~~f~~ya~~~~~~ 173 (375)
.+ .+.+.++++.+.+.
T Consensus 134 ~~---~~~~~~~~~~~~~~ 149 (237)
T PF00682_consen 134 TD---PEELLELAEALAEA 149 (237)
T ss_dssp SS---HHHHHHHHHHHHHH
T ss_pred cc---HHHHHHHHHHHHHc
Confidence 22 45667777777655
No 155
>PRK05660 HemN family oxidoreductase; Provisional
Probab=33.17 E-value=1.7e+02 Score=29.25 Aligned_cols=94 Identities=13% Similarity=0.104 Sum_probs=57.9
Q ss_pred cHHHHHHHHHcCCCeEEeccc-cc-ccccCCCCCcCChhHHHHHHHHHHHHHHcCCeeE-EEeccCCCchhHHhhcCCCC
Q 017199 79 YKEDIDLIAKLGFDAYRFSIS-WS-RIFPDGLGTKINMEGITFYNNIIDALLQKGIQPY-VTLYHWDLPLHLHESMGGWL 155 (375)
Q Consensus 79 y~eDi~l~~~lG~~~~R~si~-W~-ri~P~~~g~~~n~~~l~~y~~~i~~l~~~gi~p~-vtL~H~~~P~~l~~~~gg~~ 155 (375)
-++.++.|+++|++.+-++|. =+ ++...- | ... ..+-..+.|+.+++.|+.++ ++|. +++|.
T Consensus 106 ~~e~l~~Lk~~Gv~risiGvqS~~~~~L~~l-~-r~~--~~~~~~~ai~~~~~~G~~~v~~dli-~Glpg---------- 170 (378)
T PRK05660 106 EADRFVGYQRAGVNRISIGVQSFSEEKLKRL-G-RIH--GPDEAKRAAKLAQGLGLRSFNLDLM-HGLPD---------- 170 (378)
T ss_pred CHHHHHHHHHcCCCEEEeccCcCCHHHHHHh-C-CCC--CHHHHHHHHHHHHHcCCCeEEEEee-cCCCC----------
Confidence 458899999999997777663 22 222211 2 111 23556778999999999875 5564 46662
Q ss_pred CHHHHHHHHHHHHHHHHHcCCCcceEEeccccch
Q 017199 156 NKEIVKYFEIYADTCFASFGDRVKNWITINEPLQ 189 (375)
Q Consensus 156 ~~~~~~~f~~ya~~~~~~~~d~V~~w~t~NEp~~ 189 (375)
++.+.|.+-.+.+.+.=-+.+..+...=||+.
T Consensus 171 --qt~~~~~~~l~~~~~l~p~~is~y~l~~~~gT 202 (378)
T PRK05660 171 --QSLEEALDDLRQAIALNPPHLSWYQLTIEPNT 202 (378)
T ss_pred --CCHHHHHHHHHHHHhcCCCeEEeeccEeccCC
Confidence 23445555555555543466777766666654
No 156
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=33.12 E-value=1.7e+02 Score=29.01 Aligned_cols=47 Identities=13% Similarity=0.154 Sum_probs=38.5
Q ss_pred HHHHHHHHHcCCCeEEecccccccccCCCCCcCChhHHHHHHHHHHHHHHcCCeeEEEecc
Q 017199 80 KEDIDLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYH 140 (375)
Q Consensus 80 ~eDi~l~~~lG~~~~R~si~W~ri~P~~~g~~~n~~~l~~y~~~i~~l~~~gi~p~vtL~H 140 (375)
.+|++...+.|++.+|+....++. +--.+.|+.+++.|+++.+++..
T Consensus 91 ~~dl~~a~~~gvd~iri~~~~~e~--------------~~~~~~i~~ak~~G~~v~~~l~~ 137 (337)
T PRK08195 91 VDDLKMAYDAGVRVVRVATHCTEA--------------DVSEQHIGLARELGMDTVGFLMM 137 (337)
T ss_pred HHHHHHHHHcCCCEEEEEEecchH--------------HHHHHHHHHHHHCCCeEEEEEEe
Confidence 589999999999999998754332 23588999999999999998863
No 157
>PRK06582 coproporphyrinogen III oxidase; Provisional
Probab=33.12 E-value=2.2e+02 Score=28.72 Aligned_cols=104 Identities=10% Similarity=0.005 Sum_probs=62.3
Q ss_pred HHHHHHHHHcCCCeEEecc-cc-cccccCCCCCcCChhHHHHHHHHHHHHHHcCCeeEEEeccCCCchhHHhhcCCCCCH
Q 017199 80 KEDIDLIAKLGFDAYRFSI-SW-SRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLPLHLHESMGGWLNK 157 (375)
Q Consensus 80 ~eDi~l~~~lG~~~~R~si-~W-~ri~P~~~g~~~n~~~l~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~gg~~~~ 157 (375)
++.++.|+++|+|-+-+++ +- ..+...- | ... ..+-..+.++.+++.++.+-++|. +++|..
T Consensus 111 ~e~l~~l~~~GvnRiSiGvQS~~d~~L~~l-g-R~h--~~~~~~~ai~~~~~~~~~v~~DlI-~GlPgq----------- 174 (390)
T PRK06582 111 TEKFKAFKLAGINRVSIGVQSLKEDDLKKL-G-RTH--DCMQAIKTIEAANTIFPRVSFDLI-YARSGQ----------- 174 (390)
T ss_pred HHHHHHHHHCCCCEEEEECCcCCHHHHHHc-C-CCC--CHHHHHHHHHHHHHhCCcEEEEee-cCCCCC-----------
Confidence 6899999999999777776 32 2233221 3 221 134456677888888888888887 566621
Q ss_pred HHHHHHHHHHHHHHHHcCCCcceEEeccccchhhccccccccc
Q 017199 158 EIVKYFEIYADTCFASFGDRVKNWITINEPLQTAVNGYCTGIF 200 (375)
Q Consensus 158 ~~~~~f~~ya~~~~~~~~d~V~~w~t~NEp~~~~~~gy~~g~~ 200 (375)
+.+.+.+=++.+++.=-+.|..+...=||+.....-+..|.+
T Consensus 175 -t~e~~~~~l~~~~~l~p~his~y~L~i~~gT~l~~~~~~g~~ 216 (390)
T PRK06582 175 -TLKDWQEELKQAMQLATSHISLYQLTIEKGTPFYKLFKEGNL 216 (390)
T ss_pred -CHHHHHHHHHHHHhcCCCEEEEecCEEccCChHHHHHhcCCC
Confidence 234454545555543335677777777776544333333433
No 158
>TIGR00538 hemN oxygen-independent coproporphyrinogen III oxidase. This model represents HemN, the oxygen-independent coproporphyrinogen III oxidase that replaces HemF function under anaerobic conditions. Several species, including E. coli, Helicobacter pylori, and Aquifex aeolicus, have both a member of this family and a member of another, closely related family for which there is no evidence of coproporphyrinogen III oxidase activity. Members of this family have a perfectly conserved motif PYRT[SC]YP in a region N-terminal to the region of homology with the related uncharacterized protein.
Probab=32.95 E-value=82 Score=32.40 Aligned_cols=61 Identities=16% Similarity=0.315 Sum_probs=38.7
Q ss_pred cHHHHHHHHHcCCCeEEeccc-cc-ccccCCCCCcCChhHHHHHHHHHHHHHHcCCe-eEEEeccCCCc
Q 017199 79 YKEDIDLIAKLGFDAYRFSIS-WS-RIFPDGLGTKINMEGITFYNNIIDALLQKGIQ-PYVTLYHWDLP 144 (375)
Q Consensus 79 y~eDi~l~~~lG~~~~R~si~-W~-ri~P~~~g~~~n~~~l~~y~~~i~~l~~~gi~-p~vtL~H~~~P 144 (375)
-++.+++|+++|++.+-+++. =+ ++...- +...+ .+.+.+.++.|++.|++ +-+.|. +++|
T Consensus 150 ~~e~l~~lk~~G~~risiGvqS~~~~~l~~l-~r~~~---~~~~~~ai~~l~~~G~~~v~~dli-~GlP 213 (455)
T TIGR00538 150 TKDVIDALRDEGFNRLSFGVQDFNKEVQQAV-NRIQP---EEMIFELMNHAREAGFTSINIDLI-YGLP 213 (455)
T ss_pred CHHHHHHHHHcCCCEEEEcCCCCCHHHHHHh-CCCCC---HHHHHHHHHHHHhcCCCcEEEeEE-eeCC
Confidence 368899999999996666662 21 122111 20222 35678899999999997 445543 4555
No 159
>PLN02389 biotin synthase
Probab=32.79 E-value=1.4e+02 Score=30.26 Aligned_cols=59 Identities=19% Similarity=0.222 Sum_probs=43.4
Q ss_pred cCcHHHHHHHHHcCCCeEEecccccc-cccCCCCCcCChhHHHHHHHHHHHHHHcCCeeEEEec
Q 017199 77 HRYKEDIDLIAKLGFDAYRFSISWSR-IFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLY 139 (375)
Q Consensus 77 ~~y~eDi~l~~~lG~~~~R~si~W~r-i~P~~~g~~~n~~~l~~y~~~i~~l~~~gi~p~vtL~ 139 (375)
..-+|.++.|+++|++.|-.+++=++ ++|.-.. .- .++..-+.++.+++.||++..++.
T Consensus 175 ~l~~E~l~~LkeAGld~~~~~LeTs~~~y~~i~~-~~---s~e~rl~ti~~a~~~Gi~v~sg~I 234 (379)
T PLN02389 175 MLEKEQAAQLKEAGLTAYNHNLDTSREYYPNVIT-TR---SYDDRLETLEAVREAGISVCSGGI 234 (379)
T ss_pred CCCHHHHHHHHHcCCCEEEeeecCChHHhCCcCC-CC---CHHHHHHHHHHHHHcCCeEeEEEE
Confidence 35689999999999999999885222 4444211 12 346688999999999999877654
No 160
>cd06562 GH20_HexA_HexB-like Beta-N-acetylhexosaminidases catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. The hexA and hexB genes encode the alpha- and beta-subunits of the two major beta-N-acetylhexosaminidase isoenzymes, N-acetyl-beta-D-hexosaminidase A (HexA) and beta-N-acetylhexosaminidase B (HexB). Both the alpha and the beta catalytic subunits have a TIM-barrel fold and belong to the glycosyl hydrolase family 20 (GH20). The HexA enzyme is a heterodimer containing one alpha and one beta subunit while the HexB enzyme is a homodimer containing two beta-subunits. Hexosaminidase mutations cause an inability to properly hydrolyze certain sphingolipids which accumulate in lysosomes within the brain, resulting in the lipid storage disorders Tay-Sachs and Sandhoff. Mutations in the alpha subunit cause in a deficiency in the HexA enzyme and result in
Probab=32.74 E-value=1.1e+02 Score=30.25 Aligned_cols=63 Identities=21% Similarity=0.261 Sum_probs=44.2
Q ss_pred cHHHHHHHHHcCCCeEEecc----ccc-------ccccCC----CCCcCChhHHHHHHHHHHHHHHcCCeeEEEeccCCC
Q 017199 79 YKEDIDLIAKLGFDAYRFSI----SWS-------RIFPDG----LGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDL 143 (375)
Q Consensus 79 y~eDi~l~~~lG~~~~R~si----~W~-------ri~P~~----~g~~~n~~~l~~y~~~i~~l~~~gi~p~vtL~H~~~ 143 (375)
.++-|+.|+..++|.+-+=+ +|. .+-..+ .| .+.. +=++++|+-++++||++|.-+ |+
T Consensus 20 ik~~Id~ma~~KlN~lh~HltDd~~~rle~~~~P~Lt~~ga~~~~~-~YT~---~di~eiv~yA~~rgI~vIPEI---D~ 92 (348)
T cd06562 20 IKRTIDAMAYNKLNVLHWHITDSQSFPLESPSYPELSKKGAYSPSE-VYTP---EDVKEIVEYARLRGIRVIPEI---DT 92 (348)
T ss_pred HHHHHHHHHHhCCcEEEEeEEcCCCceEeeCCCchhhhccCcCCCc-eECH---HHHHHHHHHHHHcCCEEEEec---cC
Confidence 55668999999999887654 232 221111 12 3554 447999999999999999988 88
Q ss_pred chhHH
Q 017199 144 PLHLH 148 (375)
Q Consensus 144 P~~l~ 148 (375)
|....
T Consensus 93 PGH~~ 97 (348)
T cd06562 93 PGHTG 97 (348)
T ss_pred chhhH
Confidence 87654
No 161
>cd06599 GH31_glycosidase_Aec37 Glycosyl hydrolase family 31 (GH31) domain of a bacterial protein family represented by Escherichia coli protein Aec37. The gene encoding Aec37 (aec-37) is located within a genomic island (AGI-3) isolated from the extraintestinal avian pathogenic Escherichia coli strain BEN2908. The function of Aec37 and its orthologs is unknown; however, deletion of a region of the genome that includes aec-37 affects the assimilation of seven carbohydrates, decreases growth rate of the strain in minimal medium containing galacturonate or trehalose, and attenuates the virulence of E. coli BEN2908 in chickens. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=32.56 E-value=1.6e+02 Score=28.81 Aligned_cols=71 Identities=15% Similarity=0.122 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHcCCeeEEEeccCCC---chhHHhh---c----------------C------CCCCHHHHHHHHHHHHH
Q 017199 118 TFYNNIIDALLQKGIQPYVTLYHWDL---PLHLHES---M----------------G------GWLNKEIVKYFEIYADT 169 (375)
Q Consensus 118 ~~y~~~i~~l~~~gi~p~vtL~H~~~---P~~l~~~---~----------------g------g~~~~~~~~~f~~ya~~ 169 (375)
---.+||++|+++|++.++.++-+-. |..-+.+ | . .++||+..+.|.+..+.
T Consensus 73 Pdp~~mi~~L~~~g~k~~~~i~P~i~~~~~~y~e~~~~g~~v~~~~g~~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~ 152 (317)
T cd06599 73 PDPAAFVAKFHERGIRLAPNIKPGLLQDHPRYKELKEAGAFIKPPDGREPSIGQFWGGVGSFVDFTNPEGREWWKEGVKE 152 (317)
T ss_pred CCHHHHHHHHHHCCCEEEEEeCCcccCCCHHHHHHHHCCcEEEcCCCCCcceecccCCCeEeecCCChHHHHHHHHHHHH
Confidence 33578999999999999987764322 2221110 0 0 14688888888877755
Q ss_pred HHHHcCCCcceEEeccccch
Q 017199 170 CFASFGDRVKNWITINEPLQ 189 (375)
Q Consensus 170 ~~~~~~d~V~~w~t~NEp~~ 189 (375)
.....|- .-.|+=+|||.+
T Consensus 153 ~~~~~Gv-dg~w~D~~E~~~ 171 (317)
T cd06599 153 ALLDLGI-DSTWNDNNEYEI 171 (317)
T ss_pred HHhcCCC-cEEEecCCCCcc
Confidence 5554432 346889999974
No 162
>smart00729 Elp3 Elongator protein 3, MiaB family, Radical SAM. This superfamily contains MoaA, NifB, PqqE, coproporphyrinogen III oxidase, biotin synthase and MiaB families, and includes a representative in the eukaryotic elongator subunit, Elp-3. Some members of the family are methyltransferases.
Probab=32.29 E-value=2.7e+02 Score=23.97 Aligned_cols=58 Identities=12% Similarity=0.128 Sum_probs=39.4
Q ss_pred cCcHHHHHHHHHcCCCeEEeccc-ccc-cccCCCCCcCChhHHHHHHHHHHHHHHcC-CeeEEEe
Q 017199 77 HRYKEDIDLIAKLGFDAYRFSIS-WSR-IFPDGLGTKINMEGITFYNNIIDALLQKG-IQPYVTL 138 (375)
Q Consensus 77 ~~y~eDi~l~~~lG~~~~R~si~-W~r-i~P~~~g~~~n~~~l~~y~~~i~~l~~~g-i~p~vtL 138 (375)
..-++.++.|+++|++.+.+|+. ++. +...-.. ..+ .+.+.+.|+.+++.| +.+-+.+
T Consensus 97 ~~~~~~~~~l~~~~~~~i~isl~~~~~~~~~~~~~-~~~---~~~~~~~i~~~~~~g~~~v~~~~ 157 (216)
T smart00729 97 TLTEELLEALKEAGVNRVSLGVQSGSDEVLKAINR-GHT---VEDVLEAVEKLREAGPIKVSTDL 157 (216)
T ss_pred cCCHHHHHHHHHcCCCeEEEecccCCHHHHHHhcC-CCC---HHHHHHHHHHHHHhCCcceEEeE
Confidence 33478899999999999999995 532 2211101 122 477899999999999 6655444
No 163
>PRK14507 putative bifunctional 4-alpha-glucanotransferase/malto-oligosyltrehalose synthase; Provisional
Probab=32.23 E-value=89 Score=37.72 Aligned_cols=54 Identities=22% Similarity=0.268 Sum_probs=40.1
Q ss_pred cHHHHHHHHHcCCCeEEecccc---------------cccccCCCCCcCChhHHHHHHHHHHHHHHcCCeeEEEec
Q 017199 79 YKEDIDLIAKLGFDAYRFSISW---------------SRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLY 139 (375)
Q Consensus 79 y~eDi~l~~~lG~~~~R~si~W---------------~ri~P~~~g~~~n~~~l~~y~~~i~~l~~~gi~p~vtL~ 139 (375)
..+-++-+++|||+++=+|=-+ .+|.|.- | +.+-+++++++|+++||.+|+.+.
T Consensus 760 ~~~~l~Yl~~LGv~~i~lsPi~~a~~gs~hGYdv~D~~~idp~l-G------~~edf~~Lv~~ah~~Gi~vilDiV 828 (1693)
T PRK14507 760 AEAILPYLAALGISHVYASPILKARPGSTHGYDIVDHSQINPEI-G------GEEGFERFCAALKAHGLGQLLDIV 828 (1693)
T ss_pred HHHHhHHHHHcCCCEEEECCCcCCCCCCCCCCCCCCCCccCccc-C------CHHHHHHHHHHHHHCCCEEEEEec
Confidence 4456888999999998665443 3444442 3 345689999999999999999864
No 164
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=32.13 E-value=2.1e+02 Score=26.93 Aligned_cols=46 Identities=22% Similarity=0.284 Sum_probs=38.4
Q ss_pred HHHHHHHHHcCCCeEEecccccccccCCCCCcCChhHHHHHHHHHHHHHHcCCeeEEEec
Q 017199 80 KEDIDLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLY 139 (375)
Q Consensus 80 ~eDi~l~~~lG~~~~R~si~W~ri~P~~~g~~~n~~~l~~y~~~i~~l~~~gi~p~vtL~ 139 (375)
.+|++...+.|++.+|+.++-+.+ .-..++++.+++.|+++.+++.
T Consensus 88 ~~~i~~a~~~g~~~iri~~~~s~~--------------~~~~~~i~~ak~~G~~v~~~~~ 133 (263)
T cd07943 88 VDDLKMAADLGVDVVRVATHCTEA--------------DVSEQHIGAARKLGMDVVGFLM 133 (263)
T ss_pred HHHHHHHHHcCCCEEEEEechhhH--------------HHHHHHHHHHHHCCCeEEEEEE
Confidence 699999999999999998765432 2357789999999999999985
No 165
>PF03511 Fanconi_A: Fanconi anaemia group A protein; InterPro: IPR003516 Fanconi anaemia (FA) [, , ] is a recessive inherited disease characterised by defective DNA repair. FA cells are sensitive to DNA cross-linking agents that cause chromosomal instability and cell death. The disease is manifested clinically by progressive pancytopenia, variable physical anomalies, and predisposition to malignancy []. Four complementation groups have been identified, designated A to D. The FA group A gene (FAA) has been cloned [], but its function remains to be elucidated.
Probab=31.83 E-value=32 Score=25.50 Aligned_cols=39 Identities=18% Similarity=0.441 Sum_probs=31.0
Q ss_pred cccccCCCCCcCChhHHHHHHHHHHHHHHcCCeeEEEeccCC
Q 017199 101 SRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWD 142 (375)
Q Consensus 101 ~ri~P~~~g~~~n~~~l~~y~~~i~~l~~~gi~p~vtL~H~~ 142 (375)
+++.|.. + .=-.++++..-+++..|.++|| +++.|++-+
T Consensus 19 s~l~p~~-~-~d~~kaldiCaeIL~cLE~R~i-sWl~LFqlt 57 (64)
T PF03511_consen 19 SYLAPKE-G-ADSLKALDICAEILGCLEKRKI-SWLVLFQLT 57 (64)
T ss_pred HhcCccc-c-cccHHHHHHHHHHHHHHHhCCC-cHHHhhhcc
Confidence 5678875 4 4456789999999999999999 888887543
No 166
>cd02874 GH18_CFLE_spore_hydrolase Cortical fragment-lytic enzyme (CFLE) is a peptidoglycan hydrolase involved in bacterial endospore germination. CFLE is expressed as an inactive preprotein (called SleB) in the forespore compartment of sporulating cells. SleB translocates across the forespore inner membrane and is deposited as a mature enzyme in the cortex layer of the spore. As part of a sensory mechanism capable of initiating germination, CFLE degrades a spore-specific peptidoglycan constituent called muramic-acid delta-lactam that comprises the outer cortex. CFLE has a C-terminal glycosyl hydrolase family 18 (GH18) catalytic domain as well as two N-terminal LysM peptidoglycan-binding domains. In addition to SleB, this family includes YaaH, YdhD, and YvbX from Bacillus subtilis.
Probab=31.80 E-value=1.6e+02 Score=28.38 Aligned_cols=84 Identities=13% Similarity=0.111 Sum_probs=55.9
Q ss_pred HHHHHHcCCCeEEecccccccccCCCCCcCChhHHHHHHHHHHHHHHcCCeeEEEeccCCC----chhHHhhcCCCCCHH
Q 017199 83 IDLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDL----PLHLHESMGGWLNKE 158 (375)
Q Consensus 83 i~l~~~lG~~~~R~si~W~ri~P~~~g~~~n~~~l~~y~~~i~~l~~~gi~p~vtL~H~~~----P~~l~~~~gg~~~~~ 158 (375)
.+.++..+-+.=-++..|-.|-|++ .+.. ....++++.++++|+++++++..++- +.-+.. --.+++
T Consensus 16 ~~~~~~~~~~lt~v~p~w~~~~~~g---~~~~---~~~~~~~~~a~~~~~kv~~~i~~~~~~~~~~~~~~~---~l~~~~ 86 (313)
T cd02874 16 YESLRANAPYLTYIAPFWYGVDADG---TLTG---LPDERLIEAAKRRGVKPLLVITNLTNGNFDSELAHA---VLSNPE 86 (313)
T ss_pred HHHHHHhcCCCCEEEEEEEEEcCCC---CCCC---CCCHHHHHHHHHCCCeEEEEEecCCCCCCCHHHHHH---HhcCHH
Confidence 5677777666677888899897765 3332 22468999999999999999976541 111111 123566
Q ss_pred HHHHHHHHHHHHHHHcC
Q 017199 159 IVKYFEIYADTCFASFG 175 (375)
Q Consensus 159 ~~~~f~~ya~~~~~~~~ 175 (375)
..+.|++=+-.++++|+
T Consensus 87 ~r~~fi~~iv~~l~~~~ 103 (313)
T cd02874 87 ARQRLINNILALAKKYG 103 (313)
T ss_pred HHHHHHHHHHHHHHHhC
Confidence 67777776666677765
No 167
>TIGR02100 glgX_debranch glycogen debranching enzyme GlgX. This family consists of the GlgX protein from the E. coli glycogen operon and probable equivalogs from other prokaryotic species. GlgX is not required for glycogen biosynthesis, but instead acts as a debranching enzyme for glycogen catabolism. This model distinguishes GlgX from pullanases and other related proteins that also operate on alpha-1,6-glycosidic linkages. In the wide band between the trusted and noise cutoffs are functionally similar enzymes, mostly from plants, that act similarly but usually are termed isoamylase.
Probab=31.47 E-value=94 Score=34.04 Aligned_cols=56 Identities=21% Similarity=0.275 Sum_probs=35.7
Q ss_pred HHHHHHcCCCeEEeccccccc----------------ccCCCCCcCCh-----hHHHHHHHHHHHHHHcCCeeEEEec
Q 017199 83 IDLIAKLGFDAYRFSISWSRI----------------FPDGLGTKINM-----EGITFYNNIIDALLQKGIQPYVTLY 139 (375)
Q Consensus 83 i~l~~~lG~~~~R~si~W~ri----------------~P~~~g~~~n~-----~~l~~y~~~i~~l~~~gi~p~vtL~ 139 (375)
|+-+|+||++++=+.=-=.-. -|..- ..++. ..++=+++||++|+++||++|+.+.
T Consensus 190 LdyLk~LGvtaI~L~Pi~~~~~~~~~~~~~~~~ywGYd~~~y-~a~d~~y~~~g~~~efk~LV~~~H~~GI~VIlDvV 266 (688)
T TIGR02100 190 IDYLKKLGVTAVELLPVHAFIDDRHLLEKGLRNYWGYNTLGF-FAPEPRYLASGQVAEFKTMVRALHDAGIEVILDVV 266 (688)
T ss_pred hHHHHHcCCCEEEECCcccCCccccccccCCCCccCcCcccc-cccChhhcCCCCHHHHHHHHHHHHHCCCEEEEEEC
Confidence 789999999998754311110 01000 01111 1245699999999999999999854
No 168
>TIGR00587 nfo apurinic endonuclease (APN1). All proteins in this family for which functions are known are 5' AP endonculeases that are used in base excision repair and the repair of abasic sites in DNA.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=31.38 E-value=1.2e+02 Score=28.91 Aligned_cols=87 Identities=15% Similarity=0.148 Sum_probs=51.9
Q ss_pred cHHHHHHHHHcCCCeEEecccccccccCCCCCcCChhHHHHHHHHHHHHHHcCCeeEEEeccCCCchhHHhhcCCCCCH-
Q 017199 79 YKEDIDLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLPLHLHESMGGWLNK- 157 (375)
Q Consensus 79 y~eDi~l~~~lG~~~~R~si~W~ri~P~~~g~~~n~~~l~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~gg~~~~- 157 (375)
..+-++.++++|.+++-+-+..+|....+ .++...+ ..+-+.+.++++.......|-.++.-+ +. .++
T Consensus 13 ~~~a~~~~~~~G~~~~qif~~~P~~w~~~---~~~~~~~---~~~~~~~~~~~~~~~~i~~Hapy~iNl----as-~~~~ 81 (274)
T TIGR00587 13 LQAAYNRAAEIGATAFMFFLKSPRWWRRP---MLEEEVI---DWFKAALETNKNLSQIVLVHAPYLINL----AS-PDEE 81 (274)
T ss_pred HHHHHHHHHHhCCCEEEEEecCccccCCC---CCCHHHH---HHHHHHHHHcCCCCcceeccCCeeeec----CC-CCHH
Confidence 35678999999999999999888876554 4554333 333444778888744344553333111 11 233
Q ss_pred ---HHHHHHHHHHHHHHHHcCCC
Q 017199 158 ---EIVKYFEIYADTCFASFGDR 177 (375)
Q Consensus 158 ---~~~~~f~~ya~~~~~~~~d~ 177 (375)
.+++.|.+..+. ++.+|-.
T Consensus 82 ~r~~sv~~~~~~i~~-A~~lga~ 103 (274)
T TIGR00587 82 KEEKSLDVLDEELKR-CELLGIM 103 (274)
T ss_pred HHHHHHHHHHHHHHH-HHHcCCC
Confidence 345555555444 5556543
No 169
>PRK14706 glycogen branching enzyme; Provisional
Probab=31.30 E-value=80 Score=34.25 Aligned_cols=90 Identities=16% Similarity=0.217 Sum_probs=52.1
Q ss_pred HHHHHcCCCeEEecccccccccCC-C-C------CcCCh--hHHHHHHHHHHHHHHcCCeeEEEec--cCC---------
Q 017199 84 DLIAKLGFDAYRFSISWSRIFPDG-L-G------TKINM--EGITFYNNIIDALLQKGIQPYVTLY--HWD--------- 142 (375)
Q Consensus 84 ~l~~~lG~~~~R~si~W~ri~P~~-~-g------~~~n~--~~l~~y~~~i~~l~~~gi~p~vtL~--H~~--------- 142 (375)
+-+++||++++-+.=-=. .|.. . | ..++. -..+=++.+|++|.++||++|+.+. |+.
T Consensus 175 ~ylk~lG~t~velmPv~e--~~~~~~wGY~~~~~~~~~~~~g~~~~~~~lv~~~H~~gi~VilD~v~nH~~~~~~~l~~~ 252 (639)
T PRK14706 175 EYVTYMGYTHVELLGVME--HPFDGSWGYQVTGYYAPTSRLGTPEDFKYLVNHLHGLGIGVILDWVPGHFPTDESGLAHF 252 (639)
T ss_pred HHHHHcCCCEEEccchhc--CCCCCCCCcCcccccccccccCCHHHHHHHHHHHHHCCCEEEEEecccccCcchhhhhcc
Confidence 568999999977532100 0110 0 1 00110 1234589999999999999999754 432
Q ss_pred --Cchh-HHhhcC----CC-------CCHHHHHHHHHHHHHHHHHcC
Q 017199 143 --LPLH-LHESMG----GW-------LNKEIVKYFEIYADTCFASFG 175 (375)
Q Consensus 143 --~P~~-l~~~~g----g~-------~~~~~~~~f~~ya~~~~~~~~ 175 (375)
.|.+ ..+... .| .++++.+.+.+=++.-++.|+
T Consensus 253 dg~~~y~~~~~~~g~~~~w~~~~~~~~~~eVr~~l~~~~~~W~~e~~ 299 (639)
T PRK14706 253 DGGPLYEYADPRKGYHYDWNTYIFDYGRNEVVMFLIGSALKWLQDFH 299 (639)
T ss_pred CCCcceeccCCcCCcCCCCCCcccCCCCHHHHHHHHHHHHHHHHHhC
Confidence 1111 000001 12 257788888888888888886
No 170
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=30.88 E-value=2.5e+02 Score=26.39 Aligned_cols=54 Identities=11% Similarity=0.111 Sum_probs=37.6
Q ss_pred cCcHHHHHHHHHcCCCeEEecccccccccCCCCCcCChhHHHHHHHHHHHHHHc-CCeeEE
Q 017199 77 HRYKEDIDLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQK-GIQPYV 136 (375)
Q Consensus 77 ~~y~eDi~l~~~lG~~~~R~si~W~ri~P~~~g~~~n~~~l~~y~~~i~~l~~~-gi~p~v 136 (375)
..+++-+++++++|++.+=+.+......+.. ..+. +..+++.+.+.++ |+...+
T Consensus 10 ~~l~~~l~~a~~~G~d~vEl~~~~~~~~~~~---~~~~---~~~~~l~~~~~~~~~~~i~~ 64 (279)
T cd00019 10 FGLENALKRAKEIGFDTVAMFLGNPRSWLSR---PLKK---ERAEKFKAIAEEGPSICLSV 64 (279)
T ss_pred ccHHHHHHHHHHcCCCEEEEEcCCCCccCCC---CCCH---HHHHHHHHHHHHcCCCcEEE
Confidence 6678999999999999998888765444332 2233 4466667777777 666544
No 171
>PRK13347 coproporphyrinogen III oxidase; Provisional
Probab=30.87 E-value=1.7e+02 Score=30.12 Aligned_cols=61 Identities=18% Similarity=0.305 Sum_probs=38.6
Q ss_pred cHHHHHHHHHcCCCeEEeccc-cc-ccccCCCCCcCChhHHHHHHHHHHHHHHcCCe-eEEEeccCCCc
Q 017199 79 YKEDIDLIAKLGFDAYRFSIS-WS-RIFPDGLGTKINMEGITFYNNIIDALLQKGIQ-PYVTLYHWDLP 144 (375)
Q Consensus 79 y~eDi~l~~~lG~~~~R~si~-W~-ri~P~~~g~~~n~~~l~~y~~~i~~l~~~gi~-p~vtL~H~~~P 144 (375)
-++.+++|+++|++.+-+++. =+ .+...- +... ..+...+.|+.+++.|+. +-++|. +++|
T Consensus 151 t~e~l~~L~~~G~~rvsiGvQS~~~~vl~~l-~R~~---~~~~~~~ai~~lr~~G~~~v~~dli-~GlP 214 (453)
T PRK13347 151 TAEMLQALAALGFNRASFGVQDFDPQVQKAI-NRIQ---PEEMVARAVELLRAAGFESINFDLI-YGLP 214 (453)
T ss_pred CHHHHHHHHHcCCCEEEECCCCCCHHHHHHh-CCCC---CHHHHHHHHHHHHhcCCCcEEEeEE-EeCC
Confidence 468899999999996666652 11 122111 2022 245678899999999997 445554 3555
No 172
>PRK09249 coproporphyrinogen III oxidase; Provisional
Probab=30.57 E-value=1.9e+02 Score=29.81 Aligned_cols=61 Identities=18% Similarity=0.336 Sum_probs=39.2
Q ss_pred cHHHHHHHHHcCCCeEEeccc-cc-ccccCCCCCcCChhHHHHHHHHHHHHHHcCC-eeEEEeccCCCc
Q 017199 79 YKEDIDLIAKLGFDAYRFSIS-WS-RIFPDGLGTKINMEGITFYNNIIDALLQKGI-QPYVTLYHWDLP 144 (375)
Q Consensus 79 y~eDi~l~~~lG~~~~R~si~-W~-ri~P~~~g~~~n~~~l~~y~~~i~~l~~~gi-~p~vtL~H~~~P 144 (375)
-+|.+++|+++|++.+.+++. =+ .+...- +..- ..+-..+.++.+++.|+ .+.++|. +++|
T Consensus 150 t~e~l~~l~~aG~~risiGvqS~~~~~L~~l-~r~~---~~~~~~~ai~~l~~~G~~~v~~dli-~GlP 213 (453)
T PRK09249 150 DLEMLDALRELGFNRLSLGVQDFDPEVQKAV-NRIQ---PFEFTFALVEAARELGFTSINIDLI-YGLP 213 (453)
T ss_pred CHHHHHHHHHcCCCEEEECCCCCCHHHHHHh-CCCC---CHHHHHHHHHHHHHcCCCcEEEEEE-ccCC
Confidence 468899999999997777773 21 111111 2022 23567788999999999 4555554 4555
No 173
>PRK07094 biotin synthase; Provisional
Probab=30.50 E-value=1.9e+02 Score=27.95 Aligned_cols=58 Identities=12% Similarity=0.086 Sum_probs=41.0
Q ss_pred CcHHHHHHHHHcCCCeEEeccc-c-cccccCCCCCcCChhHHHHHHHHHHHHHHcCCeeEEEec
Q 017199 78 RYKEDIDLIAKLGFDAYRFSIS-W-SRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLY 139 (375)
Q Consensus 78 ~y~eDi~l~~~lG~~~~R~si~-W-~ri~P~~~g~~~n~~~l~~y~~~i~~l~~~gi~p~vtL~ 139 (375)
.-+|+++.|+++|++.+-++++ - .++...-.. .. ..+-+.+.++.+++.||.+..++.
T Consensus 127 ~~~e~l~~Lk~aG~~~v~~glEs~~~~~~~~i~~-~~---s~~~~~~~i~~l~~~Gi~v~~~~i 186 (323)
T PRK07094 127 RSYEEYKAWKEAGADRYLLRHETADKELYAKLHP-GM---SFENRIACLKDLKELGYEVGSGFM 186 (323)
T ss_pred CCHHHHHHHHHcCCCEEEeccccCCHHHHHHhCC-CC---CHHHHHHHHHHHHHcCCeecceEE
Confidence 4578999999999999998884 2 244433211 22 236688899999999998665543
No 174
>PLN02925 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase
Probab=30.04 E-value=1.6e+02 Score=32.32 Aligned_cols=53 Identities=13% Similarity=0.174 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHcCCeeEEEeccCCCchhHHhhcCCCCCHHHHHHHHHHHHHHHH
Q 017199 119 FYNNIIDALLQKGIQPYVTLYHWDLPLHLHESMGGWLNKEIVKYFEIYADTCFA 172 (375)
Q Consensus 119 ~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~gg~~~~~~~~~f~~ya~~~~~ 172 (375)
.+..+++.|+++|+..=+...|..++.-+..+||. +....++--.+|++.|-+
T Consensus 211 ~f~~~v~~ak~~~~~iRIGvN~GSLs~ri~~~yGd-tp~gmVeSAle~~~i~e~ 263 (733)
T PLN02925 211 VFTPLVEKCKKYGRAMRIGTNHGSLSDRIMSYYGD-SPRGMVESAFEFARICRK 263 (733)
T ss_pred HHHHHHHHHHHCCCCEEEecCCcCchHHHHHHhCC-ChHHHHHHHHHHHHHHHH
Confidence 34459999999999999999999999999999875 444566666666666544
No 175
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=29.61 E-value=4.3e+02 Score=26.13 Aligned_cols=55 Identities=16% Similarity=0.155 Sum_probs=40.8
Q ss_pred cHHHHHHHHHcCCCeEEecccccccccCCCCCcCChhHHHHHHHHHHHHHHcCCeeEEEec--cCCCchhH
Q 017199 79 YKEDIDLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLY--HWDLPLHL 147 (375)
Q Consensus 79 y~eDi~l~~~lG~~~~R~si~W~ri~P~~~g~~~n~~~l~~y~~~i~~l~~~gi~p~vtL~--H~~~P~~l 147 (375)
..+|++...+.|++.+|+....+.. +...+.|+.+++.|+++.+.+. |...|..+
T Consensus 89 ~~~dl~~a~~~gvd~iri~~~~~e~--------------d~~~~~i~~ak~~G~~v~~~l~~s~~~~~e~l 145 (333)
T TIGR03217 89 TVHDLKAAYDAGARTVRVATHCTEA--------------DVSEQHIGMARELGMDTVGFLMMSHMTPPEKL 145 (333)
T ss_pred CHHHHHHHHHCCCCEEEEEeccchH--------------HHHHHHHHHHHHcCCeEEEEEEcccCCCHHHH
Confidence 3689999999999999988753322 2357899999999999988774 43344433
No 176
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=29.34 E-value=5.5e+02 Score=25.12 Aligned_cols=152 Identities=13% Similarity=0.112 Sum_probs=79.8
Q ss_pred ccccc---CCCCCcCChhHHHHHHHHHHHHHHcCCeeEEEeccCCC---chhH---------Hhh--c-CCC-----CC-
Q 017199 101 SRIFP---DGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDL---PLHL---------HES--M-GGW-----LN- 156 (375)
Q Consensus 101 ~ri~P---~~~g~~~n~~~l~~y~~~i~~l~~~gi~p~vtL~H~~~---P~~l---------~~~--~-gg~-----~~- 156 (375)
.+..| ...+ -++.+-+..++++.+.++++|-..++=|+|..- +.+. ... . ..+ .+
T Consensus 63 ~~~~~~~~~~~~-~~~d~~i~~~~~l~~~vh~~G~~~~~Ql~h~G~~~~~~~~~~~~~ps~~~~~~~~~~~~~~p~~mt~ 141 (338)
T cd04733 63 HLEEPGIIGNVV-LESGEDLEAFREWAAAAKANGALIWAQLNHPGRQSPAGLNQNPVAPSVALDPGGLGKLFGKPRAMTE 141 (338)
T ss_pred cccCCCcCCCcc-cCCHHHHHHHHHHHHHHHhcCCEEEEEccCCCcCCCccCCCCCcCCCCCcCcccccccCCCCCcCCH
Confidence 45555 3235 678889999999999999999999999999332 1000 000 0 001 11
Q ss_pred ---HHHHHHHHHHHHHHHHHcC-CCcceEEeccccchhhcccccccccC-CCCC-CCCCchHHHHHHHHHHHHHHHHHHH
Q 017199 157 ---KEIVKYFEIYADTCFASFG-DRVKNWITINEPLQTAVNGYCTGIFA-PGRH-QHSSTEPYLVAHHQILAHAAAFSVY 230 (375)
Q Consensus 157 ---~~~~~~f~~ya~~~~~~~~-d~V~~w~t~NEp~~~~~~gy~~g~~~-p~~~-~~~~~~~~~~~h~~llAHa~Av~~~ 230 (375)
.++++.|++=|+.+ ++.| |-|. +.+-.||+...|- |... ..+.--. .+-|=..--.+.++.+
T Consensus 142 ~eI~~~i~~~~~aA~ra-~~aGfDgVe---------ih~a~gyLl~qFlsp~~N~R~D~yGG--slenR~rf~~EiI~aI 209 (338)
T cd04733 142 EEIEDVIDRFAHAARLA-QEAGFDGVQ---------IHAAHGYLLSQFLSPLTNKRTDEYGG--SLENRARLLLEIYDAI 209 (338)
T ss_pred HHHHHHHHHHHHHHHHH-HHcCCCEEE---------EchhhhhHHHHhcCCcCCCCCccCCC--CHHHHHHHHHHHHHHH
Confidence 23667777765554 3444 2222 2245577765543 4320 0010000 1223333344566667
Q ss_pred HHhhcCCCCceEEEEecCCccccCCCCHHHH-HHHHHh
Q 017199 231 QRKYKDKQGGNIGLVVDCEWAEANSDKIEDK-SAAARR 267 (375)
Q Consensus 231 k~~~~~~~~~kVG~~~~~~~~~P~~~~~~D~-~Aa~~~ 267 (375)
|+.. ..+-.|++-++...+.+..-++++. ..++..
T Consensus 210 R~av--G~d~~v~vris~~~~~~~g~~~eea~~ia~~L 245 (338)
T cd04733 210 RAAV--GPGFPVGIKLNSADFQRGGFTEEDALEVVEAL 245 (338)
T ss_pred HHHc--CCCCeEEEEEcHHHcCCCCCCHHHHHHHHHHH
Confidence 7653 2355788888765444433345443 334443
No 177
>COG3280 TreY Maltooligosyl trehalose synthase [Carbohydrate transport and metabolism]
Probab=29.17 E-value=1.1e+02 Score=33.71 Aligned_cols=65 Identities=26% Similarity=0.377 Sum_probs=44.4
Q ss_pred HHHHHHHHHcCCCeEEecccccccccCCCC------CcCChh--HHHHHHHHHHHHHHcCCeeEEEeccCCCchhHH
Q 017199 80 KEDIDLIAKLGFDAYRFSISWSRIFPDGLG------TKINME--GITFYNNIIDALLQKGIQPYVTLYHWDLPLHLH 148 (375)
Q Consensus 80 ~eDi~l~~~lG~~~~R~si~W~ri~P~~~g------~~~n~~--~l~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~ 148 (375)
++-+.-++++||+++=.|=-|.-.==...| +++|++ |.+-+.+++.+++++||-.|+.+ .|..+.
T Consensus 22 ~~~l~yl~~LGIShLY~SPIftA~pGStHGYDVvD~t~InPeLGG~egl~rLvaalk~~GlGlI~DI----VPNHMa 94 (889)
T COG3280 22 RALLDYLADLGISHLYLSPIFTARPGSTHGYDVVDPTEINPELGGEEGLERLVAALKSRGLGLIVDI----VPNHMA 94 (889)
T ss_pred HHhhHHHHhcCchheeccchhhcCCCCCCCccCCCccccChhhcChHHHHHHHHHHHhcCCceEEEe----cccchh
Confidence 455778899999988877555322100001 344443 56778999999999999999998 366554
No 178
>PRK09057 coproporphyrinogen III oxidase; Provisional
Probab=28.22 E-value=3.1e+02 Score=27.47 Aligned_cols=105 Identities=9% Similarity=-0.047 Sum_probs=61.6
Q ss_pred cHHHHHHHHHcCCCeEEeccc-c-cccccCCCCCcCChhHHHHHHHHHHHHHHcCCeeEEEeccCCCchhHHhhcCCCCC
Q 017199 79 YKEDIDLIAKLGFDAYRFSIS-W-SRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLPLHLHESMGGWLN 156 (375)
Q Consensus 79 y~eDi~l~~~lG~~~~R~si~-W-~ri~P~~~g~~~n~~~l~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~gg~~~ 156 (375)
-.+.++.|+++|+|.+-+++. = .++...- |...+ .+-..+.++.+++.++.+.+.|. +++|. .+
T Consensus 103 ~~e~L~~l~~~GvnrislGvQS~~d~vL~~l-~R~~~---~~~~~~ai~~~~~~~~~v~~dli-~GlPg---------qt 168 (380)
T PRK09057 103 EAGRFRGYRAAGVNRVSLGVQALNDADLRFL-GRLHS---VAEALAAIDLAREIFPRVSFDLI-YARPG---------QT 168 (380)
T ss_pred CHHHHHHHHHcCCCEEEEecccCCHHHHHHc-CCCCC---HHHHHHHHHHHHHhCccEEEEee-cCCCC---------CC
Confidence 358999999999997777772 2 2222221 21122 24456778888888888888886 46662 12
Q ss_pred HHHHHHHHHHHHHHHHHcCCCcceEEeccccchhhccccccccc
Q 017199 157 KEIVKYFEIYADTCFASFGDRVKNWITINEPLQTAVNGYCTGIF 200 (375)
Q Consensus 157 ~~~~~~f~~ya~~~~~~~~d~V~~w~t~NEp~~~~~~gy~~g~~ 200 (375)
.+.+.+=.+.+.+.=-+.|..+...-||+.....-+..|.+
T Consensus 169 ---~~~~~~~l~~~~~l~p~~is~y~L~~~~gT~l~~~~~~g~~ 209 (380)
T PRK09057 169 ---LAAWRAELKEALSLAADHLSLYQLTIEEGTAFYGLHAAGKL 209 (380)
T ss_pred ---HHHHHHHHHHHHhcCCCeEEeecceecCCChHHHHHhcCCC
Confidence 33333334444433224678887777887544333333433
No 179
>cd06595 GH31_xylosidase_XylS-like This family represents an uncharacterized glycosyl hydrolase family 31 (GH31) enzyme found in bacteria and eukaryotes that is related to the XylS xylosidase of Sulfolobus solfataricus. Alpha-xylosidases catalyze the release of an alpha-xylose residue from the non-reducing end of alpha-xyloside substrates. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=27.92 E-value=2.2e+02 Score=27.36 Aligned_cols=109 Identities=12% Similarity=0.123 Sum_probs=58.5
Q ss_pred HHHHHHHHcCCC--eEEecccccccc-----cCCCC-CcCChhHHHHHHHHHHHHHHcCCeeEEEeccCC-C-c---hh-
Q 017199 81 EDIDLIAKLGFD--AYRFSISWSRIF-----PDGLG-TKINMEGITFYNNIIDALLQKGIQPYVTLYHWD-L-P---LH- 146 (375)
Q Consensus 81 eDi~l~~~lG~~--~~R~si~W~ri~-----P~~~g-~~~n~~~l~~y~~~i~~l~~~gi~p~vtL~H~~-~-P---~~- 146 (375)
+=++.+++.||. ++=+.+.|..-- .++-+ -.+|.+.+--..++|++|+++|++.++.++-.- . | ..
T Consensus 29 ~v~~~~r~~~iP~D~i~lD~dw~~~~~~~~~~~~~~~ft~d~~~FPdp~~mi~~Lh~~G~k~v~~v~P~~~~~~~~~~y~ 108 (292)
T cd06595 29 ALMDRFKKHNIPLDVLVIDMDWHVTDIPSKYGSGWTGYSWNRKLFPDPEKLLQDLHDRGLKVTLNLHPADGIRAHEDQYP 108 (292)
T ss_pred HHHHHHHHhCCCccEEEEecccccccccccccCCcceeEEChhcCCCHHHHHHHHHHCCCEEEEEeCCCcccCCCcHHHH
Confidence 334555555543 555666664311 01101 134444444568999999999999998775321 1 1 11
Q ss_pred -HHhhc-----------CCCCCHHHHHHHHHHHHHHHHHcCCCcceEEeccccchh
Q 017199 147 -LHESM-----------GGWLNKEIVKYFEIYADTCFASFGDRVKNWITINEPLQT 190 (375)
Q Consensus 147 -l~~~~-----------gg~~~~~~~~~f~~ya~~~~~~~~d~V~~w~t~NEp~~~ 190 (375)
+.... ..++||+..+.|.+-....+...| -.-.|.=+|||...
T Consensus 109 ~~~~~~~~~~~~~~~~~~D~tnp~a~~~w~~~~~~~~~~~G-idg~W~D~~E~~~~ 163 (292)
T cd06595 109 EMAKALGVDPATEGPILFDLTNPKFMDAYFDNVHRPLEKQG-VDFWWLDWQQGNRT 163 (292)
T ss_pred HHHHhcCCCcccCCeEEecCCCHHHHHHHHHHHHHHHHhcC-CcEEEecCCCCccc
Confidence 11111 136777777665444333333343 12468899999754
No 180
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=27.85 E-value=72 Score=27.93 Aligned_cols=62 Identities=13% Similarity=0.047 Sum_probs=40.6
Q ss_pred ccCcHHHHHHHHHcCCCeEEecccccccccCCC-CCcCChhHHHHHHHHHHHHHHcCCeeEEEe
Q 017199 76 YHRYKEDIDLIAKLGFDAYRFSISWSRIFPDGL-GTKINMEGITFYNNIIDALLQKGIQPYVTL 138 (375)
Q Consensus 76 ~~~y~eDi~l~~~lG~~~~R~si~W~ri~P~~~-g~~~n~~~l~~y~~~i~~l~~~gi~p~vtL 138 (375)
....++-+++++.+|.+.+++...+-...+... ...+ ....+.++.+.+.+.++|+++.+=.
T Consensus 70 ~~~~~~~i~~a~~lg~~~i~~~~g~~~~~~~~~~~~~~-~~~~~~l~~l~~~a~~~gv~i~lE~ 132 (213)
T PF01261_consen 70 LEYLKKAIDLAKRLGAKYIVVHSGRYPSGPEDDTEENW-ERLAENLRELAEIAEEYGVRIALEN 132 (213)
T ss_dssp HHHHHHHHHHHHHHTBSEEEEECTTESSSTTSSHHHHH-HHHHHHHHHHHHHHHHHTSEEEEE-
T ss_pred HHHHHHHHHHHHHhCCCceeecCcccccccCCCHHHHH-HHHHHHHHHHHhhhhhhcceEEEec
Confidence 456778899999999999999976411111110 0011 1356778888888999998876643
No 181
>PTZ00445 p36-lilke protein; Provisional
Probab=27.81 E-value=88 Score=29.17 Aligned_cols=65 Identities=15% Similarity=0.276 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHcCCeeEEEeccCCCchhHHhh-cCCCCCHH---------HHHHHHHHHHHHHHHcCCCcceEEecccc
Q 017199 118 TFYNNIIDALLQKGIQPYVTLYHWDLPLHLHES-MGGWLNKE---------IVKYFEIYADTCFASFGDRVKNWITINEP 187 (375)
Q Consensus 118 ~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~-~gg~~~~~---------~~~~f~~ya~~~~~~~~d~V~~w~t~NEp 187 (375)
+.-+.+++.|++.||+.+++= +-.-+... -|||.++. ....|......+-+ .|=+| .-+||-..
T Consensus 29 ~~~~~~v~~L~~~GIk~Va~D----~DnTlI~~HsgG~~~~~~~~~~~~~~~tpefk~~~~~l~~-~~I~v-~VVTfSd~ 102 (219)
T PTZ00445 29 ESADKFVDLLNECGIKVIASD----FDLTMITKHSGGYIDPDNDDIRVLTSVTPDFKILGKRLKN-SNIKI-SVVTFSDK 102 (219)
T ss_pred HHHHHHHHHHHHcCCeEEEec----chhhhhhhhcccccCCCcchhhhhccCCHHHHHHHHHHHH-CCCeE-EEEEccch
Confidence 445778899999999999853 22222222 38898886 44556666555443 22122 24566554
Q ss_pred c
Q 017199 188 L 188 (375)
Q Consensus 188 ~ 188 (375)
.
T Consensus 103 ~ 103 (219)
T PTZ00445 103 E 103 (219)
T ss_pred h
Confidence 4
No 182
>PF02065 Melibiase: Melibiase; InterPro: IPR000111 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycosyl hydrolase family 27, family 31 and family 36 alpha-galactosidases form the glycosyl hydrolase clan GH-D (acc_GH from CAZY), a superfamily of alpha-galactosidases, alpha-N-acetylgalactosaminidases, and isomaltodextranases which are likely to share a common catalytic mechanism and structural topology. Alpha-galactosidase (3.2.1.22 from EC) (melibiase) [] catalyzes the hydrolysis of melibiose into galactose and glucose. In man, the deficiency of this enzyme is the cause of Fabry's disease (X-linked sphingolipidosis). Alpha-galactosidase is present in a variety of organisms. There is a considerable degree of similarity in the sequence of alpha-galactosidase from various eukaryotic species. Escherichia coli alpha-galactosidase (gene melA), which requires NAD and magnesium as cofactors, is not structurally related to the eukaryotic enzymes; by contrast, an Escherichia coli plasmid encoded alpha-galactosidase (gene rafA P16551 from SWISSPROT) [] contains a region of about 50 amino acids which is similar to a domain of the eukaryotic alpha-galactosidases. Alpha-N-acetylgalactosaminidase (3.2.1.49 from EC) [] catalyzes the hydrolysis of terminal non-reducing N-acetyl-D-galactosamine residues in N-acetyl-alpha-D- galactosaminides. In man, the deficiency of this enzyme is the cause of Schindler and Kanzaki diseases. The sequence of this enzyme is highly related to that of the eukaryotic alpha-galactosidases.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1KTC_A 1KTB_A 1UAS_A 3H55_A 3H53_A 3IGU_B 3H54_A 3LRM_A 3LRL_A 3LRK_A ....
Probab=26.94 E-value=6.8e+02 Score=25.42 Aligned_cols=133 Identities=20% Similarity=0.239 Sum_probs=77.9
Q ss_pred cHHHHHHHHHcCCCeEEecccccc-----------cccCCCCCcCChhHHHHHHHHHHHHHHcCCeeEEEec--------
Q 017199 79 YKEDIDLIAKLGFDAYRFSISWSR-----------IFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLY-------- 139 (375)
Q Consensus 79 y~eDi~l~~~lG~~~~R~si~W~r-----------i~P~~~g~~~n~~~l~~y~~~i~~l~~~gi~p~vtL~-------- 139 (375)
..+-++.++++|++.+=+.--|.. ..|+. . +| +.| ...+++.+++.||++=+=+-
T Consensus 60 i~~~a~~~~~~G~e~fviDDGW~~~r~~d~~~~GdW~~~~-~-kF-P~G---l~~l~~~i~~~Gmk~GlW~ePe~v~~~S 133 (394)
T PF02065_consen 60 ILELADAAAELGYEYFVIDDGWFGGRDDDNAGLGDWEPDP-K-KF-PNG---LKPLADYIHSLGMKFGLWFEPEMVSPDS 133 (394)
T ss_dssp HHHHHHHHHHHT-SEEEE-SSSBCTESTTTSTTSBECBBT-T-TS-TTH---HHHHHHHHHHTT-EEEEEEETTEEESSS
T ss_pred HHHHHHHHHHhCCEEEEEcCccccccCCCcccCCceeECh-h-hh-CCc---HHHHHHHHHHCCCeEEEEeccccccchh
Confidence 345578889999999888888964 33433 2 33 124 68899999999999765320
Q ss_pred --cCCCchhHHhhc-----CC-------CCCHHHHHHHHHHHHHHHHHcC-CCcceEEeccccchhhcccccccccCCCC
Q 017199 140 --HWDLPLHLHESM-----GG-------WLNKEIVKYFEIYADTCFASFG-DRVKNWITINEPLQTAVNGYCTGIFAPGR 204 (375)
Q Consensus 140 --H~~~P~~l~~~~-----gg-------~~~~~~~~~f~~ya~~~~~~~~-d~V~~w~t~NEp~~~~~~gy~~g~~~p~~ 204 (375)
.-.+|.|+...- .| ..+|++.+...+-...+++.+| +.+|. =+|.... .++.
T Consensus 134 ~l~~~hPdw~l~~~~~~~~~~r~~~vLD~~~pev~~~l~~~i~~ll~~~gidYiK~--D~n~~~~-----------~~~~ 200 (394)
T PF02065_consen 134 DLYREHPDWVLRDPGRPPTLGRNQYVLDLSNPEVRDYLFEVIDRLLREWGIDYIKW--DFNRDIT-----------EAGS 200 (394)
T ss_dssp CHCCSSBGGBTCCTTSE-ECBTTBEEB-TTSHHHHHHHHHHHHHHHHHTT-SEEEE--E-TS-TT-----------S-SS
T ss_pred HHHHhCccceeecCCCCCcCcccceEEcCCCHHHHHHHHHHHHHHHHhcCCCEEEe--ccccCCC-----------CCCC
Confidence 124688865320 11 3578888888888888888886 33332 2332211 1111
Q ss_pred CCCCCchHHHHHHHHHHHHHHHHHHHHHhhc
Q 017199 205 HQHSSTEPYLVAHHQILAHAAAFSVYQRKYK 235 (375)
Q Consensus 205 ~~~~~~~~~~~~h~~llAHa~Av~~~k~~~~ 235 (375)
. ... ...|...++--...+.+++.+|
T Consensus 201 ~--~~~---~~~~~~~~~~y~l~~~L~~~~P 226 (394)
T PF02065_consen 201 P--SLP---EGYHRYVLGLYRLLDRLRARFP 226 (394)
T ss_dssp T--TS----GHHHHHHHHHHHHHHHHHHHTT
T ss_pred C--Cch---HHHHHHHHHHHHHHHHHHHhCC
Confidence 1 111 4556666666667777888776
No 183
>PRK08207 coproporphyrinogen III oxidase; Provisional
Probab=26.84 E-value=1.5e+02 Score=31.00 Aligned_cols=92 Identities=14% Similarity=0.124 Sum_probs=52.5
Q ss_pred HHHHHHHHHcCCCeEEecccccccccCC---CCCcCChhHHHHHHHHHHHHHHcCC-eeEEEeccCCCchhHHhhcCCCC
Q 017199 80 KEDIDLIAKLGFDAYRFSISWSRIFPDG---LGTKINMEGITFYNNIIDALLQKGI-QPYVTLYHWDLPLHLHESMGGWL 155 (375)
Q Consensus 80 ~eDi~l~~~lG~~~~R~si~W~ri~P~~---~g~~~n~~~l~~y~~~i~~l~~~gi-~p~vtL~H~~~P~~l~~~~gg~~ 155 (375)
++-++.|+++|++ |+||.-.-.-++- -| .. -..+-..+.++.+++.|+ .+-+.|. +++|.
T Consensus 269 ~e~L~~Lk~~Gv~--RISIGvQS~~d~vLk~ig-R~--ht~e~v~~ai~~ar~~Gf~~In~DLI-~GLPg---------- 332 (488)
T PRK08207 269 EEKLEVLKKYGVD--RISINPQTMNDETLKAIG-RH--HTVEDIIEKFHLAREMGFDNINMDLI-IGLPG---------- 332 (488)
T ss_pred HHHHHHHHhcCCC--eEEEcCCcCCHHHHHHhC-CC--CCHHHHHHHHHHHHhCCCCeEEEEEE-eCCCC----------
Confidence 6779999999999 5555432222211 13 21 124667889999999999 4556665 46662
Q ss_pred CHHHHHHHHHHHHHHHHHcCCCcceEEeccccch
Q 017199 156 NKEIVKYFEIYADTCFASFGDRVKNWITINEPLQ 189 (375)
Q Consensus 156 ~~~~~~~f~~ya~~~~~~~~d~V~~w~t~NEp~~ 189 (375)
++.+.|.+-.+.+.+.=-+.|......=+|..
T Consensus 333 --Et~ed~~~tl~~l~~L~pd~isv~~L~i~~gT 364 (488)
T PRK08207 333 --EGLEEVKHTLEEIEKLNPESLTVHTLAIKRAS 364 (488)
T ss_pred --CCHHHHHHHHHHHHhcCcCEEEEEeceEcCCC
Confidence 23445555555544333345555554444443
No 184
>PF04646 DUF604: Protein of unknown function, DUF604; InterPro: IPR006740 This family includes a conserved region found in several uncharacterised plant proteins.
Probab=26.81 E-value=39 Score=32.20 Aligned_cols=73 Identities=15% Similarity=0.128 Sum_probs=42.1
Q ss_pred HHHHcCCeeEEEeccCCCchhHHhhcCCCCCHHHHHHHHHHHHHHHHHcCCCcceEEeccccchhhcccccccccC
Q 017199 126 ALLQKGIQPYVTLYHWDLPLHLHESMGGWLNKEIVKYFEIYADTCFASFGDRVKNWITINEPLQTAVNGYCTGIFA 201 (375)
Q Consensus 126 ~l~~~gi~p~vtL~H~~~P~~l~~~~gg~~~~~~~~~f~~ya~~~~~~~~d~V~~w~t~NEp~~~~~~gy~~g~~~ 201 (375)
-+.+..+.|+++||||+.=..+ +.+....+.++.+.+=++.--.++-.+-..|---....+.+..||..-.++
T Consensus 76 ~~~a~~~~pl~SlHH~~~~~Pi---fP~~~~~~al~~L~~a~~~d~~~~lqqsicyd~~~~wsvsVSwGYsVqvy~ 148 (255)
T PF04646_consen 76 FLEAHPLAPLVSLHHWDSVDPI---FPNMSRLQALRHLLKAAKVDPARILQQSICYDRRRNWSVSVSWGYSVQVYR 148 (255)
T ss_pred eeecCCCCceeeeeehhhcccc---CCCCCHHHHHHHHHHHHhhChHhhhheeeeccCceEEEEEEEccEEEEEEC
Confidence 3445568999999999963222 345555666777776555433333322112223333345567899876664
No 185
>cd06564 GH20_DspB_LnbB-like Glycosyl hydrolase family 20 (GH20) catalytic domain of dispersin B (DspB), lacto-N-biosidase (LnbB) and related proteins. Dispersin B is a soluble beta-N-acetylglucosamidase found in bacteria that hydrolyzes the beta-1,6-linkages of PGA (poly-beta-(1,6)-N-acetylglucosamine), a major component of the extracellular polysaccharide matrix. Lacto-N-biosidase hydrolyzes lacto-N-biose (LNB) type I oligosaccharides at the nonreducing terminus to produce lacto-N-biose as part of the GNB/LNB (galacto-N-biose/lacto-N-biose I) degradation pathway. The lacto-N-biosidase from Bifidobacterium bifidum has this GH20 domain, a carbohydrate binding module 32, and a bacterial immunoglobulin-like domain 2, as well as a YSIRK signal peptide and a G5 membrane anchor at the N and C termini, respectively. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=25.92 E-value=6.2e+02 Score=24.62 Aligned_cols=63 Identities=13% Similarity=0.160 Sum_probs=43.0
Q ss_pred cHHHHHHHHHcCCCeEEecc--cccc---cccC-----------------------CCCCcCChhHHHHHHHHHHHHHHc
Q 017199 79 YKEDIDLIAKLGFDAYRFSI--SWSR---IFPD-----------------------GLGTKINMEGITFYNNIIDALLQK 130 (375)
Q Consensus 79 y~eDi~l~~~lG~~~~R~si--~W~r---i~P~-----------------------~~g~~~n~~~l~~y~~~i~~l~~~ 130 (375)
.++=|+.|+..++|.+-+=+ +|.- ..|. ..| .+.. +=++++++.++++
T Consensus 19 ik~~id~ma~~K~N~lhlHltD~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~-~YT~---~di~eiv~yA~~r 94 (326)
T cd06564 19 LKDIIKTMSWYKMNDLQLHLNDNLIFNLDDMSTTVNNATYASDDVKSGNNYYNLTANDG-YYTK---EEFKELIAYAKDR 94 (326)
T ss_pred HHHHHHHHHHcCCceEEEeecCCcccccCCCchhhhhhhhhccccccccccCCCCCCCC-cccH---HHHHHHHHHHHHc
Confidence 45668999999999877533 2211 1111 113 4554 4479999999999
Q ss_pred CCeeEEEeccCCCchhHH
Q 017199 131 GIQPYVTLYHWDLPLHLH 148 (375)
Q Consensus 131 gi~p~vtL~H~~~P~~l~ 148 (375)
||++|.-+ |+|....
T Consensus 95 gI~vIPEI---D~PGH~~ 109 (326)
T cd06564 95 GVNIIPEI---DSPGHSL 109 (326)
T ss_pred CCeEeccC---CCcHHHH
Confidence 99999877 8887644
No 186
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=25.76 E-value=49 Score=19.94 Aligned_cols=15 Identities=20% Similarity=0.594 Sum_probs=12.3
Q ss_pred HHHHHHHHHHcCCee
Q 017199 120 YNNIIDALLQKGIQP 134 (375)
Q Consensus 120 y~~~i~~l~~~gi~p 134 (375)
-.++++.++++||+|
T Consensus 20 a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 20 ALQLFDEMKEQGVKP 34 (34)
T ss_pred HHHHHHHHHHhCCCC
Confidence 467888888899987
No 187
>TIGR01856 hisJ_fam histidinol phosphate phosphatase HisJ family. This model represents the histidinol phosphate phosphatase HisJ of Bacillus subtilis, and related proteins from a number of species within a larger family of phosphatases in the PHP hydrolase family. HisJ catalyzes the penultimate step of histidine biosynthesis but shows no homology to the functionally equivalent sequence in E. coli, a domain of the bifunctional HisB protein. Note, however, that many species have two members and that Clostridium perfringens, predicted not to make histidine, has five members of this family; this family is designated subfamily rather than equivalog to indicate that members may not all act as HisJ.
Probab=25.70 E-value=1.5e+02 Score=27.71 Aligned_cols=61 Identities=13% Similarity=0.152 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHcCCeeEEEeccCCCchhHHhhcCCC---CCHHHHHHHHHHHHHHHHHcCCCcce
Q 017199 118 TFYNNIIDALLQKGIQPYVTLYHWDLPLHLHESMGGW---LNKEIVKYFEIYADTCFASFGDRVKN 180 (375)
Q Consensus 118 ~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~gg~---~~~~~~~~f~~ya~~~~~~~~d~V~~ 180 (375)
...+++++++.++|++-+.-.-|..+|..+.. ..| .+.+....|.+-++.+-++|+++++.
T Consensus 15 ~~~ee~v~~A~~~Gl~~i~~TdH~p~~~~~~~--~~~~~~~~~~~~~~Y~~~i~~l~~~y~~~i~I 78 (253)
T TIGR01856 15 DTLEEVVQEAIQLGFEEICFTEHAPLPFEYPE--ETALDKMAFSSLPEYFKEINRLKKEYADKLKI 78 (253)
T ss_pred CCHHHHHHHHHHcCCCEEEecCCCCcccCCCc--cccccchhHHHHHHHHHHHHHHHHHhhCCCeE
Confidence 44789999999999999999999775432211 112 12233455555566677889876653
No 188
>PF02057 Glyco_hydro_59: Glycosyl hydrolase family 59; InterPro: IPR001286 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 59 GH59 from CAZY comprises enzymes with only one known activity; galactocerebrosidase (3.2.1.46 from EC). Globoid cell leukodystrophy (Krabbe disease) is a severe, autosomal recessive disorder that results from deficiency of galactocerebrosidase (GALC) activity [, , ]. GALC is responsible for the lysosomal catabolism of certain galactolipids, including galactosylceramide and psychosine [].; GO: 0004336 galactosylceramidase activity, 0006683 galactosylceramide catabolic process; PDB: 3ZR6_A 3ZR5_A.
Probab=25.69 E-value=1.4e+02 Score=32.53 Aligned_cols=65 Identities=14% Similarity=0.132 Sum_probs=37.3
Q ss_pred HHHHHHHHcCCeeEEEeccCCCchhHHhhcCCCC----CHH-HHHHHHHHHHHHHHHcCCCcceEEeccccch
Q 017199 122 NIIDALLQKGIQPYVTLYHWDLPLHLHESMGGWL----NKE-IVKYFEIYADTCFASFGDRVKNWITINEPLQ 189 (375)
Q Consensus 122 ~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~gg~~----~~~-~~~~f~~ya~~~~~~~~d~V~~w~t~NEp~~ 189 (375)
.++.++++++=..-+....|..|.|+.. ||. +++ ++.+...+..-+.+.+|-.++|-=++||=..
T Consensus 116 ~L~~eAKkrNP~ikl~~L~W~~PgW~~~---g~~~~~~~~~~~a~Y~~~wl~ga~~~~gl~idYvg~~NEr~~ 185 (669)
T PF02057_consen 116 WLMAEAKKRNPNIKLYGLPWGFPGWVGN---GWNWPYDNPQLTAYYVVSWLLGAKKTHGLDIDYVGIWNERGF 185 (669)
T ss_dssp HHHHHHHHH-TT-EEEEEES-B-GGGGT---TSS-TTSSHHHHHHHHHHHHHHHHHHH-----EE-S-TTS--
T ss_pred hhHHHHHhhCCCCeEEEeccCCCccccC---CCCCcccchhhhhHHHHHHHHHHHHHhCCCceEechhhccCC
Confidence 5788899998877788888999999963 432 222 3444456666677888888888888999654
No 189
>cd07947 DRE_TIM_Re_CS Clostridium kluyveri Re-citrate synthase and related proteins, catalytic TIM barrel domain. Re-citrate synthase (Re-CS) is a Clostridium kluyveri enzyme that converts acetyl-CoA and oxaloacetate to citrate. In most organisms, this reaction is catalyzed by Si-citrate synthase which is Si-face stereospecific with respect to C-2 of oxaloacetate, and phylogenetically unrelated to Re-citrate synthase. Re-citrate synthase is also found in a few other strictly anaerobic organisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with
Probab=24.26 E-value=1.5e+02 Score=28.52 Aligned_cols=62 Identities=26% Similarity=0.363 Sum_probs=48.5
Q ss_pred ccCcHHHHHHHHHcCCCeEEecccccccccCC-CCCcCChhHHHHHHHHHHHHHHcCCeeEEEe
Q 017199 76 YHRYKEDIDLIAKLGFDAYRFSISWSRIFPDG-LGTKINMEGITFYNNIIDALLQKGIQPYVTL 138 (375)
Q Consensus 76 ~~~y~eDi~l~~~lG~~~~R~si~W~ri~P~~-~g~~~n~~~l~~y~~~i~~l~~~gi~p~vtL 138 (375)
-.--++|++...++|++.+-+.++=|...-.. -+ .=-++.++.+.++++.++++|+++-+++
T Consensus 73 ~r~~~~die~A~~~g~~~v~i~~s~S~~~~~~~~~-~t~~e~l~~~~~~v~~a~~~g~~v~~~~ 135 (279)
T cd07947 73 IRANKEDLKLVKEMGLKETGILMSVSDYHIFKKLK-MTREEAMEKYLEIVEEALDHGIKPRCHL 135 (279)
T ss_pred ecCCHHHHHHHHHcCcCEEEEEEcCCHHHHHHHhC-cCHHHHHHHHHHHHHHHHHCCCeEEEEE
Confidence 33457999999999999999888665554432 13 2235689999999999999999999888
No 190
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=24.23 E-value=3.1e+02 Score=29.54 Aligned_cols=94 Identities=15% Similarity=0.049 Sum_probs=55.4
Q ss_pred cHHHHHHHHHcCCCeEEecccccccccCCCCCcCChhHHHHHHHHHHHHHHcCCeeEEEeccCCCchh----HHhh----
Q 017199 79 YKEDIDLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLPLH----LHES---- 150 (375)
Q Consensus 79 y~eDi~l~~~lG~~~~R~si~W~ri~P~~~g~~~n~~~l~~y~~~i~~l~~~gi~p~vtL~H~~~P~~----l~~~---- 150 (375)
.++|+++..+.|++.+|+..+-+.+ +-....++.++++|....+++..-..|.+ +.+.
T Consensus 98 v~~~v~~A~~~Gvd~irif~~lnd~--------------~n~~~~i~~ak~~G~~v~~~i~~t~~p~~t~~~~~~~a~~l 163 (592)
T PRK09282 98 VEKFVEKAAENGIDIFRIFDALNDV--------------RNMEVAIKAAKKAGAHVQGTISYTTSPVHTIEKYVELAKEL 163 (592)
T ss_pred hHHHHHHHHHCCCCEEEEEEecChH--------------HHHHHHHHHHHHcCCEEEEEEEeccCCCCCHHHHHHHHHHH
Confidence 4566889999999999998765433 22355566667777776666643233411 1110
Q ss_pred ------------cCCCCCHHHHHHHHHHHHHHHHHcCCCcceEEeccccchh
Q 017199 151 ------------MGGWLNKEIVKYFEIYADTCFASFGDRVKNWITINEPLQT 190 (375)
Q Consensus 151 ------------~gg~~~~~~~~~f~~ya~~~~~~~~d~V~~w~t~NEp~~~ 190 (375)
-.|-..|. ...+.++.+-++++ ..-...+.|-..+.
T Consensus 164 ~~~Gad~I~i~Dt~G~~~P~---~~~~lv~~lk~~~~-~pi~~H~Hnt~Gla 211 (592)
T PRK09282 164 EEMGCDSICIKDMAGLLTPY---AAYELVKALKEEVD-LPVQLHSHCTSGLA 211 (592)
T ss_pred HHcCCCEEEECCcCCCcCHH---HHHHHHHHHHHhCC-CeEEEEEcCCCCcH
Confidence 03445544 44556666667774 22356777777653
No 191
>COG5520 O-Glycosyl hydrolase [Cell envelope biogenesis, outer membrane]
Probab=23.95 E-value=2.3e+02 Score=28.69 Aligned_cols=94 Identities=19% Similarity=0.379 Sum_probs=57.2
Q ss_pred HcCCCeEEecccccccccCCCCCcCChhHHHHHHHHH--HHHHHcCCeeEEEeccCCCchhHHhh---cCC---CCCHHH
Q 017199 88 KLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNII--DALLQKGIQPYVTLYHWDLPLHLHES---MGG---WLNKEI 159 (375)
Q Consensus 88 ~lG~~~~R~si~W~ri~P~~~g~~~n~~~l~~y~~~i--~~l~~~gi~p~vtL~H~~~P~~l~~~---~gg---~~~~~~ 159 (375)
++|+...|+.|.=.+.--. | ..| .+|+++- +..+..|+.++.+- |..|.|.-.. -|| -+.++.
T Consensus 77 ~lg~si~Rv~I~~ndfsl~--g-~~d----~w~kels~Ak~~in~g~ivfASP--WspPa~Mktt~~~ngg~~g~Lk~e~ 147 (433)
T COG5520 77 QLGFSILRVPIDSNDFSLG--G-SAD----NWYKELSTAKSAINPGMIVFASP--WSPPASMKTTNNRNGGNAGRLKYEK 147 (433)
T ss_pred ccCceEEEEEecccccccC--C-Ccc----hhhhhcccchhhcCCCcEEEecC--CCCchhhhhccCcCCccccccchhH
Confidence 5889999998865444322 3 444 2333332 23567888888877 7899997653 133 444554
Q ss_pred HHHHHHHHHHHHHHcCC---CcceEEeccccchh
Q 017199 160 VKYFEIYADTCFASFGD---RVKNWITINEPLQT 190 (375)
Q Consensus 160 ~~~f~~ya~~~~~~~~d---~V~~w~t~NEp~~~ 190 (375)
...|+.|-...+..+++ -+.+-.+=|||.-.
T Consensus 148 Ya~yA~~l~~fv~~m~~nGvnlyalSVQNEPd~~ 181 (433)
T COG5520 148 YADYADYLNDFVLEMKNNGVNLYALSVQNEPDYA 181 (433)
T ss_pred hHHHHHHHHHHHHHHHhCCCceeEEeeccCCccc
Confidence 44455554445555554 35556689999864
No 192
>PRK10658 putative alpha-glucosidase; Provisional
Probab=23.95 E-value=5.2e+02 Score=28.20 Aligned_cols=103 Identities=16% Similarity=0.183 Sum_probs=62.2
Q ss_pred HHHHHHcCCC--eEEecccccccccCCCCCcCChhHHHHHHHHHHHHHHcCCeeEEEeccC---CCchhHHhh---c---
Q 017199 83 IDLIAKLGFD--AYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHW---DLPLHLHES---M--- 151 (375)
Q Consensus 83 i~l~~~lG~~--~~R~si~W~ri~P~~~g~~~n~~~l~~y~~~i~~l~~~gi~p~vtL~H~---~~P~~l~~~---~--- 151 (375)
++.+++.||. ++=+++.|.+-.--.+= .+|.+.+---..||++|+++|+++++.+.-+ +.|.+-+.+ |
T Consensus 289 ~~~~r~~~iP~d~i~lD~~w~~~~~~~~f-~wd~~~FPdp~~mi~~L~~~G~k~~~~i~P~i~~~s~~f~e~~~~gy~vk 367 (665)
T PRK10658 289 IDGMAERDLPLHVFHFDCFWMKEFQWCDF-EWDPRTFPDPEGMLKRLKAKGLKICVWINPYIAQKSPLFKEGKEKGYLLK 367 (665)
T ss_pred HHHHHHcCCCceEEEEchhhhcCCceeee-EEChhhCCCHHHHHHHHHHCCCEEEEeccCCcCCCchHHHHHHHCCeEEE
Confidence 4666777764 67777777543211111 3444333334789999999999998876532 222221111 0
Q ss_pred -------------C-----CCCCHHHHHHHHHHHHHHHHHcCCCcceEEeccccc
Q 017199 152 -------------G-----GWLNKEIVKYFEIYADTCFASFGDRVKNWITINEPL 188 (375)
Q Consensus 152 -------------g-----g~~~~~~~~~f~~ya~~~~~~~~d~V~~w~t~NEp~ 188 (375)
| .++||+..+.|.+..+.+.+ .| ---+|.=+||+.
T Consensus 368 ~~~G~~~~~~~W~g~~~~~Dftnp~ar~W~~~~~~~l~d-~G-vdgfw~D~gE~~ 420 (665)
T PRK10658 368 RPDGSVWQWDKWQPGMAIVDFTNPDACKWYADKLKGLLD-MG-VDCFKTDFGERI 420 (665)
T ss_pred CCCCCEeeeeecCCCceeecCCCHHHHHHHHHHHHHHHh-cC-CcEEEecCCcee
Confidence 1 26799999999888877554 44 124577789973
No 193
>cd06570 GH20_chitobiase-like_1 A functionally uncharacterized subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the chitobiase of Serratia marcescens, a beta-N-1,4-acetylhexosaminidase that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This subgroup lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=23.87 E-value=2.8e+02 Score=27.17 Aligned_cols=63 Identities=14% Similarity=0.288 Sum_probs=45.5
Q ss_pred cHHHHHHHHHcCCCeEEecc----cccc---cccCC------CCCcCChhHHHHHHHHHHHHHHcCCeeEEEeccCCCch
Q 017199 79 YKEDIDLIAKLGFDAYRFSI----SWSR---IFPDG------LGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLPL 145 (375)
Q Consensus 79 y~eDi~l~~~lG~~~~R~si----~W~r---i~P~~------~g~~~n~~~l~~y~~~i~~l~~~gi~p~vtL~H~~~P~ 145 (375)
.++=|+.|+..++|.+-+-+ +|.- -.|+- .| .+.. +=++++++-++++||++|.-+ |+|.
T Consensus 20 ik~~Id~ma~~KlN~lh~HltDd~~~rle~~~~P~lt~~g~~~~-~yT~---~di~elv~yA~~rgI~vIPEI---d~PG 92 (311)
T cd06570 20 IKRQLDAMASVKLNVFHWHLTDDQGFRIESKKYPKLQQKASDGL-YYTQ---EQIREVVAYARDRGIRVVPEI---DVPG 92 (311)
T ss_pred HHHHHHHHHHhCCeEEEEEEecCCCceeecCCCccccccCCCCC-ccCH---HHHHHHHHHHHHcCCEEEEee---cCcc
Confidence 45668999999999877765 5642 23331 12 4555 447999999999999999988 7886
Q ss_pred hHH
Q 017199 146 HLH 148 (375)
Q Consensus 146 ~l~ 148 (375)
...
T Consensus 93 H~~ 95 (311)
T cd06570 93 HAS 95 (311)
T ss_pred chH
Confidence 543
No 194
>PF07071 DUF1341: Protein of unknown function (DUF1341); InterPro: IPR010763 Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.; PDB: 3NZR_D 3LM7_A 3M0Z_B 3M6Y_A 3N73_A 3MUX_A.
Probab=23.76 E-value=1.6e+02 Score=27.31 Aligned_cols=46 Identities=20% Similarity=0.420 Sum_probs=29.0
Q ss_pred cCcHHHHHHHHHcCCCeEEecccccccccCCCCCcCChhHHHHHHHHHHHHHHcCCee
Q 017199 77 HRYKEDIDLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQP 134 (375)
Q Consensus 77 ~~y~eDi~l~~~lG~~~~R~si~W~ri~P~~~g~~~n~~~l~~y~~~i~~l~~~gi~p 134 (375)
-.-+.-++++++||.+++.| +|-+ | . +-++=|..+-++|.++|+..
T Consensus 135 V~vetAiaml~dmG~~SiKf-------fPm~-G--l--~~leE~~avAkA~a~~g~~l 180 (218)
T PF07071_consen 135 VPVETAIAMLKDMGGSSIKF-------FPMG-G--L--KHLEELKAVAKACARNGFTL 180 (218)
T ss_dssp EEHHHHHHHHHHTT--EEEE----------T-T--T--TTHHHHHHHHHHHHHCT-EE
T ss_pred ccHHHHHHHHHHcCCCeeeE-------eecC-C--c--ccHHHHHHHHHHHHHcCcee
Confidence 34567799999999999986 6765 5 1 23455777888888888743
No 195
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=23.66 E-value=3.2e+02 Score=29.43 Aligned_cols=98 Identities=17% Similarity=0.126 Sum_probs=52.9
Q ss_pred cccCcHH-----HHHHHHHcCCCeEEecccccccccCCCCCcCChhHHHHHHHHHHHHHHcCCeeEEEeccCCCchh---
Q 017199 75 HYHRYKE-----DIDLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLPLH--- 146 (375)
Q Consensus 75 ~~~~y~e-----Di~l~~~lG~~~~R~si~W~ri~P~~~g~~~n~~~l~~y~~~i~~l~~~gi~p~vtL~H~~~P~~--- 146 (375)
-|..|++ .++++++.|++.+|..-+. |+ ++-...-|+..++.|.....+++--..|..
T Consensus 89 Gy~~~~d~vv~~~v~~a~~~Gidv~Rifd~l------------nd--~~n~~~~i~~~k~~G~~~~~~i~yt~sp~~t~e 154 (596)
T PRK14042 89 GYRNYADDVVRAFVKLAVNNGVDVFRVFDAL------------ND--ARNLKVAIDAIKSHKKHAQGAICYTTSPVHTLD 154 (596)
T ss_pred ccccCChHHHHHHHHHHHHcCCCEEEEcccC------------cc--hHHHHHHHHHHHHcCCEEEEEEEecCCCCCCHH
Confidence 4555665 6889999999999975432 21 223344455555566555555332222211
Q ss_pred -HHhh----------------cCCCCCHHHHHHHHHHHHHHHHHcCCCcceEEeccccchh
Q 017199 147 -LHES----------------MGGWLNKEIVKYFEIYADTCFASFGDRVKNWITINEPLQT 190 (375)
Q Consensus 147 -l~~~----------------~gg~~~~~~~~~f~~ya~~~~~~~~d~V~~w~t~NEp~~~ 190 (375)
+.+. -.|-.+|. ...+.++.+-++++ ..-...+-|-..+.
T Consensus 155 ~~~~~ak~l~~~Gad~I~IkDtaG~l~P~---~v~~lv~alk~~~~-ipi~~H~Hnt~Gla 211 (596)
T PRK14042 155 NFLELGKKLAEMGCDSIAIKDMAGLLTPT---VTVELYAGLKQATG-LPVHLHSHSTSGLA 211 (596)
T ss_pred HHHHHHHHHHHcCCCEEEeCCcccCCCHH---HHHHHHHHHHhhcC-CEEEEEeCCCCCcH
Confidence 1000 14555654 34455666666664 22346677776654
No 196
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=23.48 E-value=1.1e+02 Score=28.56 Aligned_cols=60 Identities=8% Similarity=0.000 Sum_probs=38.8
Q ss_pred ccCcHHHHHHHHHcCCCeEEecccccccccCCCCCcCChhHHHHHHHHHHHHHHcCCeeEEE
Q 017199 76 YHRYKEDIDLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVT 137 (375)
Q Consensus 76 ~~~y~eDi~l~~~lG~~~~R~si~W~ri~P~~~g~~~n~~~l~~y~~~i~~l~~~gi~p~vt 137 (375)
...++.-|++.+.+|.+.+++........+.. . ..-+..++.++.+.+.+.++||+..+=
T Consensus 89 ~~~~~~~i~~a~~lGa~~i~~~~~~~~~~~~~-~-~~~~~~~~~l~~l~~~a~~~gv~l~iE 148 (275)
T PRK09856 89 LDMIKLAMDMAKEMNAGYTLISAAHAGYLTPP-N-VIWGRLAENLSELCEYAENIGMDLILE 148 (275)
T ss_pred HHHHHHHHHHHHHhCCCEEEEcCCCCCCCCCH-H-HHHHHHHHHHHHHHHHHHHcCCEEEEe
Confidence 34555667899999999999864322111111 1 111345677888899999999977664
No 197
>KOG0470 consensus 1,4-alpha-glucan branching enzyme/starch branching enzyme II [Carbohydrate transport and metabolism]
Probab=23.43 E-value=97 Score=33.92 Aligned_cols=64 Identities=20% Similarity=0.389 Sum_probs=42.4
Q ss_pred ccCcHHH-HHHHHHcCCCeEEecc--cc-ccc-----------ccCCC-CCcCC-hhHHHHHHHHHHHHHHcCCeeEEEe
Q 017199 76 YHRYKED-IDLIAKLGFDAYRFSI--SW-SRI-----------FPDGL-GTKIN-MEGITFYNNIIDALLQKGIQPYVTL 138 (375)
Q Consensus 76 ~~~y~eD-i~l~~~lG~~~~R~si--~W-~ri-----------~P~~~-g~~~n-~~~l~~y~~~i~~l~~~gi~p~vtL 138 (375)
|..+.|+ +..+|.||.|++-+=- +- +.. -|... | ..+ +.-+.=++.||+++.+.||++++.+
T Consensus 253 Y~~FteKvlphlK~LG~NaiqLmpi~Ef~~~~~s~GY~~~nFFapssrYg-t~~s~~ri~efK~lVd~aHs~GI~VlLDV 331 (757)
T KOG0470|consen 253 YLGFTEKVLPHLKKLGYNAIQLMPIFEFGHYYASWGYQVTNFFAPSSRYG-TPESPCRINEFKELVDKAHSLGIEVLLDV 331 (757)
T ss_pred hhhhhhhhhhHHHHhCccceEEeehhhhhhhhhccCcceeEeeccccccc-CCCcccchHHHHHHHHHHhhCCcEEehhh
Confidence 7777777 9999999999887311 11 111 12110 2 111 1124458999999999999999987
Q ss_pred cc
Q 017199 139 YH 140 (375)
Q Consensus 139 ~H 140 (375)
.|
T Consensus 332 V~ 333 (757)
T KOG0470|consen 332 VH 333 (757)
T ss_pred hh
Confidence 75
No 198
>PRK11572 copper homeostasis protein CutC; Provisional
Probab=23.18 E-value=2.6e+02 Score=26.59 Aligned_cols=42 Identities=26% Similarity=0.409 Sum_probs=30.9
Q ss_pred ccCcHHHHHHHHHcCCCeEEecccccccccCCCCCcCChhHHHHHHHHHHHH
Q 017199 76 YHRYKEDIDLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDAL 127 (375)
Q Consensus 76 ~~~y~eDi~l~~~lG~~~~R~si~W~ri~P~~~g~~~n~~~l~~y~~~i~~l 127 (375)
.....+||+.++++|++-+=|++- +++| .+|.+. ..++++.+
T Consensus 72 ~~~M~~di~~~~~~GadGvV~G~L------~~dg-~vD~~~---~~~Li~~a 113 (248)
T PRK11572 72 FAAMLEDIATVRELGFPGLVTGVL------DVDG-HVDMPR---MRKIMAAA 113 (248)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeeE------CCCC-CcCHHH---HHHHHHHh
Confidence 345678999999999999999874 2246 898744 45666665
No 199
>PRK12330 oxaloacetate decarboxylase; Provisional
Probab=23.14 E-value=3.4e+02 Score=28.63 Aligned_cols=94 Identities=14% Similarity=0.041 Sum_probs=52.5
Q ss_pred HHHHHHHHHcCCCeEEecccccccccCCCCCcCChhHHHHHHHHHHHHHHcCCeeEEEe----ccCCCchhHHhh-----
Q 017199 80 KEDIDLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTL----YHWDLPLHLHES----- 150 (375)
Q Consensus 80 ~eDi~l~~~lG~~~~R~si~W~ri~P~~~g~~~n~~~l~~y~~~i~~l~~~gi~p~vtL----~H~~~P~~l~~~----- 150 (375)
+.|++...+.|++.+|+....+.+ .-....++.+++.|.....++ .+-..|..+.+.
T Consensus 100 ~~fv~~a~~~Gidi~RIfd~lndv--------------~nl~~ai~~vk~ag~~~~~~i~yt~sp~~t~e~~~~~a~~l~ 165 (499)
T PRK12330 100 DRFVEKSAENGMDVFRVFDALNDP--------------RNLEHAMKAVKKVGKHAQGTICYTVSPIHTVEGFVEQAKRLL 165 (499)
T ss_pred HHHHHHHHHcCCCEEEEEecCChH--------------HHHHHHHHHHHHhCCeEEEEEEEecCCCCCHHHHHHHHHHHH
Confidence 357899999999999998765443 223444555555555443332 112222221110
Q ss_pred -----------cCCCCCHHHHHHHHHHHHHHHHHcCCCc-ceEEeccccchh
Q 017199 151 -----------MGGWLNKEIVKYFEIYADTCFASFGDRV-KNWITINEPLQT 190 (375)
Q Consensus 151 -----------~gg~~~~~~~~~f~~ya~~~~~~~~d~V-~~w~t~NEp~~~ 190 (375)
-.|-..|. ...+.++.+-+++++.+ -...+-|-..+.
T Consensus 166 ~~Gad~I~IkDtaGll~P~---~~~~LV~~Lk~~~~~~ipI~~H~Hnt~GlA 214 (499)
T PRK12330 166 DMGADSICIKDMAALLKPQ---PAYDIVKGIKEACGEDTRINLHCHSTTGVT 214 (499)
T ss_pred HcCCCEEEeCCCccCCCHH---HHHHHHHHHHHhCCCCCeEEEEeCCCCCcH
Confidence 14555544 45566677777886333 346788877654
No 200
>TIGR00423 radical SAM domain protein, CofH subfamily. This protein family includes the CofH protein of coenzyme F(420) biosynthesis from Methanocaldococcus jannaschii, but appears to hit genomes more broadly than just the subset that make coenzyme F(420), so that narrower group is being built as a separate family.
Probab=23.14 E-value=5e+02 Score=25.02 Aligned_cols=54 Identities=20% Similarity=0.334 Sum_probs=37.7
Q ss_pred cHHHHHHHHHcCCCeEE-eccc-c-----cccccCCCCCcCChhHHHHHHHHHHHHHHcCCeeEEEec
Q 017199 79 YKEDIDLIAKLGFDAYR-FSIS-W-----SRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLY 139 (375)
Q Consensus 79 y~eDi~l~~~lG~~~~R-~si~-W-----~ri~P~~~g~~~n~~~l~~y~~~i~~l~~~gi~p~vtL~ 139 (375)
.+|.++.|+++|++.+- .+++ - .++.|. ... .+.+.+.++.+++.||++..++.
T Consensus 106 ~~e~l~~LkeAGl~~i~~~g~E~l~~~~~~~i~~~----~~t---~~~~l~~i~~a~~~Gi~~~s~~i 166 (309)
T TIGR00423 106 IEEVLKRLKKAGLDSMPGTGAEILDDSVRRKICPN----KLS---SDEWLEVIKTAHRLGIPTTATMM 166 (309)
T ss_pred HHHHHHHHHHcCCCcCCCCcchhcCHHHHHhhCCC----CCC---HHHHHHHHHHHHHcCCCceeeEE
Confidence 37889999999999885 2321 1 122232 233 35568999999999999998764
No 201
>TIGR02631 xylA_Arthro xylose isomerase, Arthrobacter type. This model describes a D-xylose isomerase that is also active as a D-glucose isomerase. It is tetrameric and dependent on a divalent cation Mg2+, Co2+ or Mn2+ as characterized in Arthrobacter. Members of this family differ substantially from the D-xylose isomerases of family TIGR02630.
Probab=22.98 E-value=5.6e+02 Score=25.84 Aligned_cols=93 Identities=17% Similarity=0.222 Sum_probs=52.6
Q ss_pred cCcHHHHHHHHHcCCCeEEecccccccccCCCCCcCChhHHHHHHHHHHHHHHcCCeeEEEecc-CCCchhHHhhcCCCC
Q 017199 77 HRYKEDIDLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYH-WDLPLHLHESMGGWL 155 (375)
Q Consensus 77 ~~y~eDi~l~~~lG~~~~R~si~W~ri~P~~~g~~~n~~~l~~y~~~i~~l~~~gi~p~vtL~H-~~~P~~l~~~~gg~~ 155 (375)
-...+-++.++++|++.+=+ ....+.|-+ - ...+.. ...+++-+.|.++||++...... +..|.+ +.|++.
T Consensus 32 ~~~~e~i~~la~~GfdgVE~--~~~dl~P~~-~-~~~e~~-~~~~~lk~~L~~~GL~v~~v~~nl~~~~~~---~~g~la 103 (382)
T TIGR02631 32 LDPVEAVHKLAELGAYGVTF--HDDDLIPFG-A-PPQERD-QIVRRFKKALDETGLKVPMVTTNLFSHPVF---KDGGFT 103 (382)
T ss_pred cCHHHHHHHHHHhCCCEEEe--cccccCCCC-C-ChhHHH-HHHHHHHHHHHHhCCeEEEeeccccCCccc---cCCCCC
Confidence 35678899999999998854 334455543 1 111111 34677888899999996653332 222333 226777
Q ss_pred CHH--HHHHHHHHHH---HHHHHcCCC
Q 017199 156 NKE--IVKYFEIYAD---TCFASFGDR 177 (375)
Q Consensus 156 ~~~--~~~~f~~ya~---~~~~~~~d~ 177 (375)
+++ +.+.=.++.+ .+++.+|-.
T Consensus 104 s~d~~vR~~ai~~~kraId~A~eLGa~ 130 (382)
T TIGR02631 104 SNDRSVRRYALRKVLRNMDLGAELGAE 130 (382)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 643 2222222222 246677764
No 202
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=22.88 E-value=4.2e+02 Score=27.56 Aligned_cols=61 Identities=10% Similarity=0.015 Sum_probs=39.8
Q ss_pred cHHHHHHHHHcCCCeEEeccc--ccccccCCCCCcCChhHHHHHHHHHHHHHHcCCeeEEEeccCCCc
Q 017199 79 YKEDIDLIAKLGFDAYRFSIS--WSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLP 144 (375)
Q Consensus 79 y~eDi~l~~~lG~~~~R~si~--W~ri~P~~~g~~~n~~~l~~y~~~i~~l~~~gi~p~vtL~H~~~P 144 (375)
-++-+++|+++|++.+-++++ =.++...-.. ..+ .+-..+.|+.++++||.+.+.+. +++|
T Consensus 286 d~ell~~l~~aG~~~v~iGiES~~~~~L~~~~K-~~t---~~~~~~ai~~l~~~Gi~~~~~~I-~G~P 348 (497)
T TIGR02026 286 DADILHLYRRAGLVHISLGTEAAAQATLDHFRK-GTT---TSTNKEAIRLLRQHNILSEAQFI-TGFE 348 (497)
T ss_pred CHHHHHHHHHhCCcEEEEccccCCHHHHHHhcC-CCC---HHHHHHHHHHHHHCCCcEEEEEE-EECC
Confidence 355689999999998888873 2222222111 233 34577899999999999877654 3445
No 203
>COG3661 AguA Alpha-glucuronidase [Carbohydrate transport and metabolism]
Probab=22.64 E-value=5.7e+02 Score=26.71 Aligned_cols=88 Identities=17% Similarity=0.300 Sum_probs=56.3
Q ss_pred cCcHHHHHHHHHcCCCeEEecccccccccCCCC-CcCChhHHHHHHHHHHHHHHcCCeeEEEeccCCCchhHHhhcCCCC
Q 017199 77 HRYKEDIDLIAKLGFDAYRFSISWSRIFPDGLG-TKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLPLHLHESMGGWL 155 (375)
Q Consensus 77 ~~y~eDi~l~~~lG~~~~R~si~W~ri~P~~~g-~~~n~~~l~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~gg~~ 155 (375)
.|.++--++++++|+|..-+.= +--.... --++..-|+....+-|-.+.+||++.+++. |..|..| ||-.
T Consensus 183 qR~kDYAR~laSiGINg~v~NN----VNvk~~e~~lit~~fl~k~aklAdiFR~YGIK~yLsin-faSP~~l----GgL~ 253 (684)
T COG3661 183 QRMKDYARALASIGINGTVLNN----VNVKKAESYLITAPFLAKAAKLADIFRPYGIKVYLSIN-FASPMEL----GGLK 253 (684)
T ss_pred HHHHHHHHHHhhcCcceEEecc----cccchhhhheechHhHHHHHHHHHHhhhccceEEEEec-cCCcccc----CCcC
Confidence 5666777889999999876542 1111001 013444567778888999999999999995 7889765 6643
Q ss_pred -----CHHHHHHHHHHHHHHHHH
Q 017199 156 -----NKEIVKYFEIYADTCFAS 173 (375)
Q Consensus 156 -----~~~~~~~f~~ya~~~~~~ 173 (375)
.+.+...+.+=|+.+.+-
T Consensus 254 TADPLDe~VrawWkeka~~IY~y 276 (684)
T COG3661 254 TADPLDEAVRAWWKEKADEIYKY 276 (684)
T ss_pred cCCcccHHHHHHHHHHHHHHHHh
Confidence 344445555444444443
No 204
>cd06522 GH25_AtlA-like AtlA is an autolysin found in Gram-positive lactic acid bacteria that degrades bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues. This family includes the AtlA and Aml autolysins from Streptococcus mutans which have a C-terminal glycosyl hydrolase family 25 (GH25) catalytic domain as well as six tandem N-terminal repeats of the GBS (group B Streptococcus) Bsp-like peptidoglycan-binding domain. Other members of this family have one or more C-terminal peptidoglycan-binding domain(s) (SH3 or LysM) in addition to the GH25 domain.
Probab=22.50 E-value=4.2e+02 Score=23.60 Aligned_cols=49 Identities=18% Similarity=0.365 Sum_probs=36.6
Q ss_pred HHHHHHHHcCCC--eEEecccccccccCCCCCcCChhHHHHHHHHHHHHHHcCCeeEEEeccCCCc
Q 017199 81 EDIDLIAKLGFD--AYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLP 144 (375)
Q Consensus 81 eDi~l~~~lG~~--~~R~si~W~ri~P~~~g~~~n~~~l~~y~~~i~~l~~~gi~p~vtL~H~~~P 144 (375)
.|.+.+|+.|++ .+|.+ +|.+ ..| ..+..-++.++++||. +..+||..|
T Consensus 16 ~dw~~vk~~Gi~faiikat--------eG~~-~~D----~~~~~n~~~A~~aGl~--vG~Yhf~~~ 66 (192)
T cd06522 16 ADYNKLKNYGVKAVIVKLT--------EGTT-YRN----PYAASQIANAKAAGLK--VSAYHYAHY 66 (192)
T ss_pred HHHHHHHHcCCCEEEEEEc--------CCCC-ccC----hHHHHHHHHHHHCCCe--eEEEEEEec
Confidence 478899999998 44442 3334 567 4688999999999994 688998765
No 205
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=22.48 E-value=1.5e+02 Score=27.98 Aligned_cols=60 Identities=8% Similarity=0.095 Sum_probs=39.0
Q ss_pred cCcHHHHHHHHHcCCCeEEecccccccccCCCCCcCChhHHHHHHHHHHHHHHcCCeeEEEe
Q 017199 77 HRYKEDIDLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTL 138 (375)
Q Consensus 77 ~~y~eDi~l~~~lG~~~~R~si~W~ri~P~~~g~~~n~~~l~~y~~~i~~l~~~gi~p~vtL 138 (375)
.+++.-+++++++|.+.+++.-. +..+......--...++.++++++.+.++||.+.+=.
T Consensus 94 ~~~~~~i~~a~~lG~~~v~~~~~--~~~~~~~~~~~~~~~~~~l~~l~~~A~~~Gv~l~lE~ 153 (279)
T TIGR00542 94 EIMEKAIQLARDLGIRTIQLAGY--DVYYEEHDEETRRRFREGLKEAVELAARAQVTLAVEI 153 (279)
T ss_pred HHHHHHHHHHHHhCCCEEEecCc--ccccCcCCHHHHHHHHHHHHHHHHHHHHcCCEEEEee
Confidence 44667789999999999998531 1111110001112355777888999999999888754
No 206
>PF04055 Radical_SAM: Radical SAM superfamily; InterPro: IPR007197 Radical SAM proteins catalyze diverse reactions, including unusual methylations, isomerization, sulphur insertion, ring formation, anaerobic oxidation and protein radical formation. Evidence exists that these proteins generate a radical species by reductive cleavage of S:-adenosylmethionine (SAM) through an unusual Fe-S centre [, ].; GO: 0003824 catalytic activity, 0051536 iron-sulfur cluster binding; PDB: 2A5H_D 3T7V_A 3C8F_A 3CB8_A 2FB2_A 2FB3_A 3CIX_A 3IIX_A 3IIZ_A 3CIW_A ....
Probab=21.73 E-value=1.6e+02 Score=24.29 Aligned_cols=51 Identities=24% Similarity=0.281 Sum_probs=36.8
Q ss_pred HHHHHHHHHcCCCeEEeccc-cccc-ccCCCCCcC-ChhHHHHHHHHHHHHHHcCCee
Q 017199 80 KEDIDLIAKLGFDAYRFSIS-WSRI-FPDGLGTKI-NMEGITFYNNIIDALLQKGIQP 134 (375)
Q Consensus 80 ~eDi~l~~~lG~~~~R~si~-W~ri-~P~~~g~~~-n~~~l~~y~~~i~~l~~~gi~p 134 (375)
++.++.+++.|++.+++|++ -+.- ..+ .+ ....++..-+.++.|+++|+.+
T Consensus 90 ~~~l~~l~~~~~~~i~~~l~s~~~~~~~~----~~~~~~~~~~~~~~l~~l~~~g~~~ 143 (166)
T PF04055_consen 90 EELLDELKKLGVDRIRISLESLDEESVLR----IINRGKSFERVLEALERLKEAGIPR 143 (166)
T ss_dssp HHHHHHHHHTTCSEEEEEEBSSSHHHHHH----HHSSTSHHHHHHHHHHHHHHTTSET
T ss_pred HHHHHHHHhcCccEEecccccCCHHHhhh----hhcCCCCHHHHHHHHHHHHHcCCCc
Confidence 88999999999999999994 2221 111 11 1124567788999999999985
No 207
>PF00728 Glyco_hydro_20: Glycosyl hydrolase family 20, catalytic domain; InterPro: IPR015883 Glycoside hydrolase family 20 GH20 from CAZY comprises enzymes with several known activities; beta-hexosaminidase (3.2.1.52 from EC); lacto-N-biosidase (3.2.1.140 from EC). Carbonyl oxygen of the C-2 acetamido group of the substrate acts as the catalytic nucleophile/base in this family of enzymes. In the brain and other tissues, beta-hexosaminidase A degrades GM2 gangliosides; specifically, the enzyme hydrolyses terminal non-reducing N-acetyl-D-hexosamine residues in N-acetyl-beta-D-hexosaminides. There are 3 forms of beta-hexosaminidase: hexosaminidase A is a trimer, with one alpha, one beta-A and one beta-B chain; hexosaminidase B is a tetramer of two beta-A and two beta-B chains; and hexosaminidase S is a homodimer of alpha chains. The two beta chains are derived from the cleavage of a precursor. Mutations in the beta-chain lead to Sandhoff disease, a lysosomal storage disorder characterised by accumulation of GM2 ganglioside [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 3RPM_A 1C7T_A 1QBA_A 1QBB_A 1C7S_A 3RCN_A 2YL8_A 2YL6_A 2YLL_A 2YL5_C ....
Probab=21.36 E-value=1.2e+02 Score=29.57 Aligned_cols=61 Identities=20% Similarity=0.306 Sum_probs=38.7
Q ss_pred cHHHHHHHHHcCCCeEEeccc----cc-------ccccCCC-------CCcCChhHHHHHHHHHHHHHHcCCeeEEEecc
Q 017199 79 YKEDIDLIAKLGFDAYRFSIS----WS-------RIFPDGL-------GTKINMEGITFYNNIIDALLQKGIQPYVTLYH 140 (375)
Q Consensus 79 y~eDi~l~~~lG~~~~R~si~----W~-------ri~P~~~-------g~~~n~~~l~~y~~~i~~l~~~gi~p~vtL~H 140 (375)
.++=|+.|+..++|.+-+=++ |+ .+-..+. | .+.. +=++++|+.++++||++|.-+
T Consensus 20 ik~~id~ma~~k~N~lhlhl~D~~~~~~~~~~~p~l~~~ga~~~~~~~~-~yT~---~di~~lv~yA~~~gI~VIPei-- 93 (351)
T PF00728_consen 20 IKRLIDQMAYYKLNVLHLHLSDDQGFRLESKSYPELTEKGAYRPSDAGG-YYTK---EDIRELVAYAKERGIEVIPEI-- 93 (351)
T ss_dssp HHHHHHHHHHTT-SEEEEEEESSTCB-BEBSTSTHHHHTTTESTTCTES-EBEH---HHHHHHHHHHHHTT-EEEEEE--
T ss_pred HHHHHHHHHHcCCcEEEEEEecCCCCccccCCCccccccCccccccccc-cCCH---HHHHHHHHHHHHcCCceeeec--
Confidence 566799999999997765542 32 2222210 1 2333 347999999999999999977
Q ss_pred CCCchh
Q 017199 141 WDLPLH 146 (375)
Q Consensus 141 ~~~P~~ 146 (375)
|+|..
T Consensus 94 -d~PGH 98 (351)
T PF00728_consen 94 -DTPGH 98 (351)
T ss_dssp -EESSS
T ss_pred -cCchH
Confidence 45543
No 208
>TIGR02127 pyrF_sub2 orotidine 5'-phosphate decarboxylase, subfamily 2. This model represents orotidine 5'-monophosphate decarboxylase, the PyrF protein of pyrimidine nucleotide biosynthesis. See TIGR01740 for a related but distinct subfamily of the same enzyme.
Probab=21.34 E-value=2.8e+02 Score=26.47 Aligned_cols=58 Identities=12% Similarity=0.013 Sum_probs=41.7
Q ss_pred HHHHHHcCCCeEEecccccccccCCCCCcCChhHHHHHHHHHHHHHHcCCeeEEEeccCCCchh
Q 017199 83 IDLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLPLH 146 (375)
Q Consensus 83 i~l~~~lG~~~~R~si~W~ri~P~~~g~~~n~~~l~~y~~~i~~l~~~gi~p~vtL~H~~~P~~ 146 (375)
++++.+++=...-+=+.++-++.. ..++++-+.++++.+++.|..+|+++=+.|+|.-
T Consensus 44 ~~ii~~l~~~v~~vK~g~~lf~~~------G~~gi~~l~~~~~~~~~~g~~VilD~K~~DIpnT 101 (261)
T TIGR02127 44 LRIIDATAEYAAVVKPQVAFFERF------GSEGFKALEEVIAHARSLGLPVLADVKRGDIGST 101 (261)
T ss_pred HHHHHhcCCcceEEecCHHHHHhc------CHHHHHHHHHHHHHHHHCCCeEEEEeeccChHHH
Confidence 356667654433344445445433 3467889999999999999999999999999854
No 209
>PRK06256 biotin synthase; Validated
Probab=21.30 E-value=1.7e+02 Score=28.60 Aligned_cols=57 Identities=16% Similarity=0.229 Sum_probs=39.4
Q ss_pred CcHHHHHHHHHcCCCeEEecc-cccccccCCCCCcCChhHHHHHHHHHHHHHHcCCeeEEEe
Q 017199 78 RYKEDIDLIAKLGFDAYRFSI-SWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTL 138 (375)
Q Consensus 78 ~y~eDi~l~~~lG~~~~R~si-~W~ri~P~~~g~~~n~~~l~~y~~~i~~l~~~gi~p~vtL 138 (375)
.-+|.++.|+++|++.+-+++ +=.++.+.-.. .- .++...+.|+.+++.||++..++
T Consensus 150 l~~e~l~~LkeaG~~~v~~~lEts~~~~~~i~~-~~---t~~~~i~~i~~a~~~Gi~v~~~~ 207 (336)
T PRK06256 150 LTEEQAERLKEAGVDRYNHNLETSRSYFPNVVT-TH---TYEDRIDTCEMVKAAGIEPCSGG 207 (336)
T ss_pred CCHHHHHHHHHhCCCEEecCCccCHHHHhhcCC-CC---CHHHHHHHHHHHHHcCCeeccCe
Confidence 557889999999999998877 32234433211 12 24567789999999999866544
No 210
>PRK09389 (R)-citramalate synthase; Provisional
Probab=20.94 E-value=1.8e+02 Score=30.42 Aligned_cols=108 Identities=14% Similarity=-0.039 Sum_probs=70.9
Q ss_pred CcHHHHHHHHHcCCCeEEecccccccccCC-CCCcCChhHHHHHHHHHHHHHHcCCeeEEEeccCCC--chhHHhh----
Q 017199 78 RYKEDIDLIAKLGFDAYRFSISWSRIFPDG-LGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDL--PLHLHES---- 150 (375)
Q Consensus 78 ~y~eDi~l~~~lG~~~~R~si~W~ri~P~~-~g~~~n~~~l~~y~~~i~~l~~~gi~p~vtL~H~~~--P~~l~~~---- 150 (375)
.-++|++.+.+.|++.+++.++-|.+.-.. -+ .--++.++...+.+..+++.|+++.+++-...- |..+.+-
T Consensus 74 ~~~~di~~a~~~g~~~v~i~~~~Sd~h~~~~l~-~s~~e~l~~~~~~v~~ak~~g~~v~~~~ed~~r~~~~~l~~~~~~~ 152 (488)
T PRK09389 74 AVKVDIDAALECDVDSVHLVVPTSDLHIEYKLK-KTREEVLETAVEAVEYAKDHGLIVELSGEDASRADLDFLKELYKAG 152 (488)
T ss_pred cCHHHHHHHHhCCcCEEEEEEccCHHHHHHHhC-CCHHHHHHHHHHHHHHHHHCCCEEEEEEeeCCCCCHHHHHHHHHHH
Confidence 348999999999999999999877664332 12 223467888999999999999999888764321 3333211
Q ss_pred --c----------CCCCCHHHHHHHHHHHHHHHHHcCCCcceEEeccccchh
Q 017199 151 --M----------GGWLNKEIVKYFEIYADTCFASFGDRVKNWITINEPLQT 190 (375)
Q Consensus 151 --~----------gg~~~~~~~~~f~~ya~~~~~~~~d~V~~w~t~NEp~~~ 190 (375)
. -|...| ..+.++++.+.++++ ..--...-|-..+.
T Consensus 153 ~~~Ga~~i~l~DTvG~~~P---~~~~~lv~~l~~~~~-v~l~~H~HND~GlA 200 (488)
T PRK09389 153 IEAGADRICFCDTVGILTP---EKTYELFKRLSELVK-GPVSIHCHNDFGLA 200 (488)
T ss_pred HhCCCCEEEEecCCCCcCH---HHHHHHHHHHHhhcC-CeEEEEecCCccHH
Confidence 1 233443 455556666666664 12246678887764
No 211
>COG3684 LacD Tagatose-1,6-bisphosphate aldolase [Carbohydrate transport and metabolism]
Probab=20.79 E-value=1.8e+02 Score=28.07 Aligned_cols=56 Identities=16% Similarity=0.242 Sum_probs=46.9
Q ss_pred HHHHHHHcCCCeEEecccccccccCCCCCcCChhHHHHHHHHHHHHHHcCCeeEEEeccCC
Q 017199 82 DIDLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWD 142 (375)
Q Consensus 82 Di~l~~~lG~~~~R~si~W~ri~P~~~g~~~n~~~l~~y~~~i~~l~~~gi~p~vtL~H~~ 142 (375)
+-+.+|+.|-+++.|=+-|.-= + . ++|+.-+++.+++..+|.+.+|--++-...++
T Consensus 116 sa~riK~~G~~avK~Lvy~~~D---~-~-e~neqk~a~ierigsec~aedi~f~lE~ltyd 171 (306)
T COG3684 116 SAKRIKEDGGDAVKFLVYYRSD---E-D-EINEQKLAYIERIGSECHAEDLPFFLEPLTYD 171 (306)
T ss_pred CHHHHHHhcccceEEEEEEcCC---c-h-HHhHHHHHHHHHHHHHhhhcCCceeEeeeecC
Confidence 3578999999999999988432 2 2 68999999999999999999999888876555
No 212
>PF07555 NAGidase: beta-N-acetylglucosaminidase ; InterPro: IPR011496 This family consists of both eukaryotic and prokaryotic hyaluronidases. Human Q9HAR0 from SWISSPROT is expressed during meningioma []. Clostridium perfringens, P26831 from SWISSPROT, is involved in pathogenesis and is likely to act on connectivity tissue during gas gangrene []. It catalyses the random hydrolysis of 1->4-linkages between N-acetyl-beta-D-glucosamine and D-glucuronate residues in hyaluronate.; PDB: 2WB5_B 2V5C_B 2VUR_A 2V5D_A 2YDS_A 2CBI_A 2XPK_A 2CBJ_B 2J62_A 2X0Y_A ....
Probab=20.68 E-value=8e+02 Score=24.00 Aligned_cols=85 Identities=13% Similarity=0.206 Sum_probs=51.5
Q ss_pred HHHHHHHHcCCCeEEecc--------cccccccCCCCCcCChhHHHHHHHHHHHHHHcCCeeEEEeccCCCchhHHhhcC
Q 017199 81 EDIDLIAKLGFDAYRFSI--------SWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLPLHLHESMG 152 (375)
Q Consensus 81 eDi~l~~~lG~~~~R~si--------~W~ri~P~~~g~~~n~~~l~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~g 152 (375)
+=++.|++.|+|+|=+.= .|.. .+.++.++.+.++++.++++||+-+++|+ |.....
T Consensus 19 ~l~~f~~~~kmN~YiYAPKdDpyhr~~Wre--------~Yp~~el~~l~~L~~~a~~~~V~Fv~ais----Pg~~~~--- 83 (306)
T PF07555_consen 19 DLIRFLGRYKMNTYIYAPKDDPYHRSKWRE--------PYPEEELAELKELADAAKANGVDFVYAIS----PGLDIC--- 83 (306)
T ss_dssp HHHHHHHHTT--EEEE--TT-TTTTTTTTS-----------HHHHHHHHHHHHHHHHTT-EEEEEEB----GTTT-----
T ss_pred HHHHHHHHcCCceEEECCCCChHHHhhhcc--------cCCHHHHHHHHHHHHHHHHcCCEEEEEEC----cccccc---
Confidence 447888999999997543 2322 44566789999999999999999999996 543321
Q ss_pred CCCCHHHHHHHHHHHHHHHHHcCCCcceEEec
Q 017199 153 GWLNKEIVKYFEIYADTCFASFGDRVKNWITI 184 (375)
Q Consensus 153 g~~~~~~~~~f~~ya~~~~~~~~d~V~~w~t~ 184 (375)
+. .-+.+....+++-+-+.--|+.+-++
T Consensus 84 -~s---~~~d~~~L~~K~~ql~~lGvr~Fail 111 (306)
T PF07555_consen 84 -YS---SEEDFEALKAKFDQLYDLGVRSFAIL 111 (306)
T ss_dssp -TS---HHHHHHHHHHHHHHHHCTT--EEEEE
T ss_pred -cC---cHHHHHHHHHHHHHHHhcCCCEEEEe
Confidence 12 34455566666666666567665543
No 213
>PF14606 Lipase_GDSL_3: GDSL-like Lipase/Acylhydrolase family; PDB: 3SKV_B.
Probab=20.67 E-value=2.2e+02 Score=25.62 Aligned_cols=94 Identities=15% Similarity=0.160 Sum_probs=56.7
Q ss_pred HHHHHHHHHcCCCeEEecccccccccCCCCCcCChhHHHHHHHHHHHHHHcC-CeeEEEeccCCCchhHHhhcCCCCCHH
Q 017199 80 KEDIDLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKG-IQPYVTLYHWDLPLHLHESMGGWLNKE 158 (375)
Q Consensus 80 ~eDi~l~~~lG~~~~R~si~W~ri~P~~~g~~~n~~~l~~y~~~i~~l~~~g-i~p~vtL~H~~~P~~l~~~~gg~~~~~ 158 (375)
++=.++|+++--+.+=+.+.-. ++. . .+ .+....+|+.+++.. -+||+.+-|...|....+. ....
T Consensus 49 ~~~a~~ia~~~a~~~~ld~~~N---~~~-~-~~----~~~~~~fv~~iR~~hP~tPIllv~~~~~~~~~~~~----~~~~ 115 (178)
T PF14606_consen 49 PEVADLIAEIDADLIVLDCGPN---MSP-E-EF----RERLDGFVKTIREAHPDTPILLVSPIPYPAGYFDN----SRGE 115 (178)
T ss_dssp HHHHHHHHHS--SEEEEEESHH---CCT-T-TH----HHHHHHHHHHHHTT-SSS-EEEEE----TTTTS------TTS-
T ss_pred HHHHHHHhcCCCCEEEEEeecC---CCH-H-HH----HHHHHHHHHHHHHhCCCCCEEEEecCCccccccCc----hHHH
Confidence 3446788888778777776554 222 2 33 367889999999988 8899999887776543321 2245
Q ss_pred HHHHHHHHHHHHHHHc---CCCcceEEeccc
Q 017199 159 IVKYFEIYADTCFASF---GDRVKNWITINE 186 (375)
Q Consensus 159 ~~~~f~~ya~~~~~~~---~d~V~~w~t~NE 186 (375)
..+.+.+-.+.+++++ |++--|++.-.|
T Consensus 116 ~~~~~~~~~r~~v~~l~~~g~~nl~~l~g~~ 146 (178)
T PF14606_consen 116 TVEEFREALREAVEQLRKEGDKNLYYLDGEE 146 (178)
T ss_dssp -HHHHHHHHHHHHHHHHHTT-TTEEEE-HHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCCcEEEeCchh
Confidence 6788888888888888 776666666555
No 214
>cd01335 Radical_SAM Radical SAM superfamily. Enzymes of this family generate radicals by combining a 4Fe-4S cluster and S-adenosylmethionine (SAM) in close proximity. They are characterized by a conserved CxxxCxxC motif, which coordinates the conserved iron-sulfur cluster. Mechanistically, they share the transfer of a single electron from the iron-sulfur cluster to SAM, which leads to its reductive cleavage to methionine and a 5'-deoxyadenosyl radical, which, in turn, abstracts a hydrogen from the appropriately positioned carbon atom. Depending on the enzyme, SAM is consumed during this process or it is restored and reused. Radical SAM enzymes catalyze steps in metabolism, DNA repair, the biosynthesis of vitamins and coenzymes, and the biosynthesis of many antibiotics. Examples are biotin synthase (BioB), lipoyl synthase (LipA), pyruvate formate-lyase (PFL), coproporphyrinogen oxidase (HemN), lysine 2,3-aminomutase (LAM), anaerobic ribonucleotide reductase (ARR), and MoaA, an enzyme o
Probab=20.49 E-value=1.8e+02 Score=24.70 Aligned_cols=59 Identities=19% Similarity=0.179 Sum_probs=39.3
Q ss_pred cHHHHHHHHHcCCCeEEeccccc-ccccCCCCCcCChhHHHHHHHHHHHHHHcCCeeEEEec
Q 017199 79 YKEDIDLIAKLGFDAYRFSISWS-RIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLY 139 (375)
Q Consensus 79 y~eDi~l~~~lG~~~~R~si~W~-ri~P~~~g~~~n~~~l~~y~~~i~~l~~~gi~p~vtL~ 139 (375)
-+++++.|+++|+..+.+|++-. .-.-.... -....++.+-+.|+.+++.|+...+++.
T Consensus 87 ~~~~~~~l~~~g~~~i~i~le~~~~~~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~i 146 (204)
T cd01335 87 TEELLKELKELGLDGVGVSLDSGDEEVADKIR--GSGESFKERLEALKELREAGLGLSTTLL 146 (204)
T ss_pred CHHHHHHHHhCCCceEEEEcccCCHHHHHHHh--cCCcCHHHHHHHHHHHHHcCCCceEEEE
Confidence 47899999999999999999632 22111000 0111346678888888888888777663
No 215
>cd06563 GH20_chitobiase-like The chitobiase of Serratia marcescens is a beta-N-1,4-acetylhexosaminidase with a glycosyl hydrolase family 20 (GH20) domain that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This GH20 domain family includes an N-acetylglucosamidase (GlcNAcase A) from Pseudoalteromonas piscicida and an N-acetylhexosaminidase (SpHex) from Streptomyces plicatus. SpHex lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=20.44 E-value=3.1e+02 Score=27.23 Aligned_cols=63 Identities=22% Similarity=0.390 Sum_probs=43.6
Q ss_pred cHHHHHHHHHcCCCeEEecc----cc-------cccccCC--------------------CCCcCChhHHHHHHHHHHHH
Q 017199 79 YKEDIDLIAKLGFDAYRFSI----SW-------SRIFPDG--------------------LGTKINMEGITFYNNIIDAL 127 (375)
Q Consensus 79 y~eDi~l~~~lG~~~~R~si----~W-------~ri~P~~--------------------~g~~~n~~~l~~y~~~i~~l 127 (375)
.++-|+.|+..++|.+-+-+ +| +.+-..+ .| .+-. +=++++++.+
T Consensus 20 ik~~Id~ma~~K~N~lhlHltDdq~~rle~~~~P~Lt~~ga~~~~~~~~~~~~~~~~~~~~~-~YT~---~di~eiv~yA 95 (357)
T cd06563 20 VKRFIDLMALYKLNVFHWHLTDDQGWRIEIKKYPKLTEVGAWRGPTEIGLPQGGGDGTPYGG-FYTQ---EEIREIVAYA 95 (357)
T ss_pred HHHHHHHHHHhccceEEEeeecCCCceecccCcchhhhcccccCcccccccccccCCCccCc-eECH---HHHHHHHHHH
Confidence 56668999999999877655 23 3321111 12 3444 4579999999
Q ss_pred HHcCCeeEEEeccCCCchhHH
Q 017199 128 LQKGIQPYVTLYHWDLPLHLH 148 (375)
Q Consensus 128 ~~~gi~p~vtL~H~~~P~~l~ 148 (375)
+++||++|.-+ |+|....
T Consensus 96 ~~rgI~VIPEI---D~PGH~~ 113 (357)
T cd06563 96 AERGITVIPEI---DMPGHAL 113 (357)
T ss_pred HHcCCEEEEec---CCchhHH
Confidence 99999999987 7886643
No 216
>PRK07106 5-aminoimidazole-4-carboxamide ribonucleotide transformylase; Provisional
Probab=20.37 E-value=1.4e+02 Score=30.27 Aligned_cols=51 Identities=24% Similarity=0.394 Sum_probs=43.3
Q ss_pred CccCCcccCcHHHHHHHHHcCCCeEEecccccccccCCCCCcCChhHHHHHHHHHHHHHHcCCeeEEE
Q 017199 70 DVAVDHYHRYKEDIDLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVT 137 (375)
Q Consensus 70 ~~a~~~~~~y~eDi~l~~~lG~~~~R~si~W~ri~P~~~g~~~n~~~l~~y~~~i~~l~~~gi~p~vt 137 (375)
-.++|-+-.+++-|+..++.|++++ |+|.| .++. +++|+.|-++||.-+.|
T Consensus 333 vlASDAFFPF~D~Id~Aa~~GV~aI--------iQPGG---SiRD------~evI~aane~giaMvfT 383 (390)
T PRK07106 333 ALGSDAFFPFGDNIERAAKSGVKYI--------AQPGG---SIRD------DNVIETCNKYGMTMAFT 383 (390)
T ss_pred EEEecccCCCCchHHHHHHcCCEEE--------ECCCC---CCCc------HHHHHHHHHhCCEEEEC
Confidence 3578999999999999999999987 88875 4543 68999999999988776
No 217
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=20.35 E-value=3e+02 Score=26.33 Aligned_cols=71 Identities=10% Similarity=-0.000 Sum_probs=49.7
Q ss_pred CCcccCcHHHHHHHHHcCCCeEEecccccccccCC-CCCcCChhHHHHHHHHHHHHHHcCCeeEEEeccCCCchhHH
Q 017199 73 VDHYHRYKEDIDLIAKLGFDAYRFSISWSRIFPDG-LGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLPLHLH 148 (375)
Q Consensus 73 ~~~~~~y~eDi~l~~~lG~~~~R~si~W~ri~P~~-~g~~~n~~~l~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~ 148 (375)
.+..+...+--+.+|++|++.+|-+..=+|--|.. .| +-. +.+..+-+.+++.||..+.+.++-..+..+.
T Consensus 37 ie~~~~~~~~A~~lk~~g~~~~r~~~~kpRTs~~s~~G--~g~---~gl~~l~~~~~~~Gl~~~te~~d~~~~~~l~ 108 (266)
T PRK13398 37 VESEEQMVKVAEKLKELGVHMLRGGAFKPRTSPYSFQG--LGE---EGLKILKEVGDKYNLPVVTEVMDTRDVEEVA 108 (266)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEeeecCCCCCCccCC--cHH---HHHHHHHHHHHHcCCCEEEeeCChhhHHHHH
Confidence 44556667778889999999999997556666543 23 223 4566666777999999999997655444443
No 218
>PF11790 Glyco_hydro_cc: Glycosyl hydrolase catalytic core; InterPro: IPR024655 This entry represents the glycosyl hydrolase catalytic core of a group of uncharacterised proteins.
Probab=20.03 E-value=76 Score=29.68 Aligned_cols=24 Identities=17% Similarity=0.130 Sum_probs=0.0
Q ss_pred HHHHHHHHHcCCCcceEEeccccch
Q 017199 165 IYADTCFASFGDRVKNWITINEPLQ 189 (375)
Q Consensus 165 ~ya~~~~~~~~d~V~~w~t~NEp~~ 189 (375)
...+.+.+. +..+++++.||||+.
T Consensus 54 ~~~~~v~~~-~~~~~~ll~fNEPD~ 77 (239)
T PF11790_consen 54 DWLANVQNA-HPGSKHLLGFNEPDL 77 (239)
T ss_pred HHHHHHHhh-ccCccceeeecCCCC
Done!