Query 017200
Match_columns 375
No_of_seqs 384 out of 2464
Neff 6.2
Searched_HMMs 46136
Date Fri Mar 29 06:29:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017200.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017200hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2672 Lipoate synthase [Coen 100.0 3E-109 7E-114 776.7 23.7 330 42-373 19-354 (360)
2 COG0320 LipA Lipoate synthase 100.0 6.4E-96 1E-100 687.8 26.1 287 73-367 19-305 (306)
3 PTZ00413 lipoate synthase; Pro 100.0 1.2E-91 2.6E-96 691.0 33.2 337 37-373 47-393 (398)
4 PLN02428 lipoic acid synthase 100.0 6.8E-88 1.5E-92 665.5 34.4 335 36-374 12-346 (349)
5 TIGR00510 lipA lipoate synthas 100.0 1.5E-83 3.2E-88 626.5 31.7 294 70-370 9-302 (302)
6 PRK12928 lipoyl synthase; Prov 100.0 1.1E-75 2.4E-80 569.0 30.2 281 73-361 9-290 (290)
7 PRK05481 lipoyl synthase; Prov 100.0 3.1E-64 6.8E-69 488.9 31.8 282 75-364 4-285 (289)
8 PRK08444 hypothetical protein; 100.0 3.9E-31 8.6E-36 263.5 19.9 240 90-344 13-274 (353)
9 PRK05927 hypothetical protein; 100.0 2.5E-30 5.5E-35 257.5 18.7 246 86-343 3-271 (350)
10 COG0621 MiaB 2-methylthioadeni 100.0 1.1E-29 2.4E-34 257.6 22.3 212 129-345 144-372 (437)
11 TIGR03700 mena_SCO4494 putativ 100.0 7.3E-30 1.6E-34 254.3 19.6 237 90-343 11-274 (351)
12 PRK05926 hypothetical protein; 100.0 1.3E-28 2.9E-33 246.7 20.8 240 90-345 28-297 (370)
13 PRK08445 hypothetical protein; 100.0 3.2E-28 7E-33 242.3 20.7 237 92-342 6-269 (348)
14 PRK08508 biotin synthase; Prov 100.0 1.2E-27 2.7E-32 231.5 22.3 204 129-343 6-216 (279)
15 PRK15108 biotin synthase; Prov 100.0 2.6E-27 5.7E-32 235.6 24.0 234 92-341 9-251 (345)
16 COG0502 BioB Biotin synthase a 100.0 2.5E-27 5.4E-32 232.5 19.9 212 129-355 50-269 (335)
17 PLN02389 biotin synthase 100.0 7.1E-27 1.5E-31 234.9 22.3 237 91-341 48-293 (379)
18 PRK09234 fbiC FO synthase; Rev 99.9 8E-27 1.7E-31 253.7 22.3 240 90-344 487-755 (843)
19 PRK07360 FO synthase subunit 2 99.9 9.9E-27 2.1E-31 233.5 21.0 235 91-341 21-287 (371)
20 COG1060 ThiH Thiamine biosynth 99.9 1.6E-26 3.4E-31 231.2 21.3 251 91-355 22-301 (370)
21 TIGR03699 mena_SCO4550 menaqui 99.9 1.1E-26 2.4E-31 230.1 19.8 236 92-343 5-265 (340)
22 TIGR00423 radical SAM domain p 99.9 2.5E-26 5.5E-31 225.0 21.7 202 130-341 6-230 (309)
23 TIGR03551 F420_cofH 7,8-dideme 99.9 3.4E-26 7.4E-31 227.2 22.8 233 92-341 3-265 (343)
24 PRK06256 biotin synthase; Vali 99.9 1.2E-25 2.5E-30 222.2 22.9 236 90-340 20-264 (336)
25 PRK09240 thiH thiamine biosynt 99.9 7E-26 1.5E-30 227.4 21.5 210 91-317 37-264 (371)
26 TIGR03550 F420_cofG 7,8-dideme 99.9 1E-25 2.2E-30 222.2 19.7 207 129-344 4-235 (322)
27 PRK07094 biotin synthase; Prov 99.9 3.9E-25 8.5E-30 217.2 23.4 217 93-325 4-228 (323)
28 PRK09234 fbiC FO synthase; Rev 99.9 1.2E-24 2.7E-29 236.7 21.5 240 92-344 29-304 (843)
29 TIGR02351 thiH thiazole biosyn 99.9 2.2E-24 4.8E-29 216.2 20.9 223 91-330 36-276 (366)
30 PRK14332 (dimethylallyl)adenos 99.9 1.2E-23 2.5E-28 216.1 23.3 214 129-346 154-380 (449)
31 PRK14340 (dimethylallyl)adenos 99.9 1.1E-23 2.4E-28 216.0 22.8 215 129-346 149-377 (445)
32 PRK14327 (dimethylallyl)adenos 99.9 1.8E-23 3.9E-28 217.4 23.8 216 128-346 211-440 (509)
33 PRK14339 (dimethylallyl)adenos 99.9 2E-23 4.4E-28 212.7 23.2 215 128-346 126-358 (420)
34 PRK09613 thiH thiamine biosynt 99.9 7.5E-23 1.6E-27 210.4 23.5 231 89-334 45-300 (469)
35 PRK14329 (dimethylallyl)adenos 99.9 6.9E-23 1.5E-27 211.4 22.7 215 129-346 168-402 (467)
36 PRK14335 (dimethylallyl)adenos 99.9 9.6E-23 2.1E-27 209.7 22.9 216 128-346 151-386 (455)
37 PRK14336 (dimethylallyl)adenos 99.9 9.5E-23 2.1E-27 207.7 22.2 215 129-346 124-353 (418)
38 PRK06245 cofG FO synthase subu 99.9 1E-22 2.2E-27 201.5 21.5 206 129-342 7-237 (336)
39 PRK14337 (dimethylallyl)adenos 99.9 1.6E-22 3.5E-27 207.6 22.9 215 128-346 147-377 (446)
40 TIGR00433 bioB biotin syntheta 99.9 2.3E-22 4.9E-27 194.7 21.6 198 133-341 32-236 (296)
41 TIGR01574 miaB-methiolase tRNA 99.9 2E-22 4.4E-27 206.3 22.3 215 129-346 145-375 (438)
42 TIGR01579 MiaB-like-C MiaB-lik 99.9 2.2E-22 4.8E-27 204.4 22.4 215 129-346 138-366 (414)
43 PRK14331 (dimethylallyl)adenos 99.9 2.4E-22 5.2E-27 205.7 22.2 215 129-346 146-373 (437)
44 PRK14326 (dimethylallyl)adenos 99.9 4.6E-22 9.9E-27 206.9 23.4 214 129-345 157-384 (502)
45 PRK14328 (dimethylallyl)adenos 99.9 4.1E-22 8.9E-27 204.1 21.8 215 129-346 147-375 (439)
46 PRK14330 (dimethylallyl)adenos 99.9 5.2E-22 1.1E-26 203.0 22.1 215 129-346 140-369 (434)
47 PRK14862 rimO ribosomal protei 99.9 7.9E-22 1.7E-26 202.2 23.2 214 129-346 139-374 (440)
48 TIGR01125 MiaB-like tRNA modif 99.9 9.8E-22 2.1E-26 200.7 23.3 214 129-345 135-362 (430)
49 PRK14338 (dimethylallyl)adenos 99.9 1.4E-21 2.9E-26 201.4 24.3 212 129-344 155-385 (459)
50 TIGR00089 RNA modification enz 99.9 7.6E-22 1.6E-26 201.3 21.4 215 129-346 139-367 (429)
51 PRK14325 (dimethylallyl)adenos 99.9 1.3E-21 2.8E-26 200.6 23.1 214 129-345 147-376 (444)
52 PRK14333 (dimethylallyl)adenos 99.9 7.3E-22 1.6E-26 202.8 20.9 214 129-345 148-382 (448)
53 TIGR01578 MiaB-like-B MiaB-lik 99.9 3.4E-21 7.5E-26 196.3 23.9 215 129-346 133-360 (420)
54 PRK14334 (dimethylallyl)adenos 99.9 2.6E-21 5.6E-26 198.3 22.5 215 129-346 138-365 (440)
55 PRK06267 hypothetical protein; 99.9 1.8E-20 3.9E-25 187.0 18.1 219 102-341 4-231 (350)
56 KOG2900 Biotin synthase [Coenz 99.8 1.3E-19 2.8E-24 170.0 11.1 223 119-355 74-307 (380)
57 KOG2492 CDK5 activator-binding 99.8 5.9E-18 1.3E-22 167.4 16.0 208 127-338 218-464 (552)
58 smart00729 Elp3 Elongator prot 99.7 6.8E-17 1.5E-21 145.0 18.0 176 131-313 3-190 (216)
59 PRK01254 hypothetical protein; 99.7 7.7E-16 1.7E-20 162.1 19.3 179 129-309 372-592 (707)
60 TIGR03471 HpnJ hopanoid biosyn 99.7 1.3E-15 2.8E-20 157.4 20.3 169 132-312 199-375 (472)
61 TIGR02026 BchE magnesium-proto 99.7 1.4E-15 3.1E-20 158.2 20.1 174 130-311 194-374 (497)
62 cd01335 Radical_SAM Radical SA 99.7 2.8E-15 6.1E-20 132.5 18.4 172 134-313 2-179 (204)
63 PRK08207 coproporphyrinogen II 99.7 2.3E-15 5E-20 156.3 19.3 228 129-367 164-429 (488)
64 PF04055 Radical_SAM: Radical 99.7 1.1E-15 2.4E-20 131.9 13.2 157 134-299 2-166 (166)
65 PRK00955 hypothetical protein; 99.7 2.3E-15 5.1E-20 158.7 18.1 185 129-316 292-521 (620)
66 PRK08599 coproporphyrinogen II 99.7 3.2E-15 6.9E-20 150.3 17.5 216 130-354 3-241 (377)
67 TIGR01212 radical SAM protein, 99.6 1.1E-14 2.3E-19 142.8 19.8 178 109-313 24-216 (302)
68 PRK13361 molybdenum cofactor b 99.6 4.7E-14 1E-18 139.6 21.3 186 133-331 18-211 (329)
69 PRK05660 HemN family oxidoredu 99.6 4.4E-14 9.5E-19 142.4 20.5 209 137-354 14-244 (378)
70 PRK05799 coproporphyrinogen II 99.6 2.8E-14 6E-19 143.2 18.6 207 137-354 11-240 (374)
71 PRK05904 coproporphyrinogen II 99.6 4.8E-14 1E-18 141.1 19.9 208 137-353 14-238 (353)
72 TIGR02666 moaA molybdenum cofa 99.6 7.8E-14 1.7E-18 137.9 20.9 169 134-313 15-191 (334)
73 PRK05628 coproporphyrinogen II 99.6 5.7E-14 1.2E-18 141.2 20.1 205 138-353 11-248 (375)
74 PRK00164 moaA molybdenum cofac 99.6 1.3E-13 2.9E-18 136.0 20.3 170 133-313 21-196 (331)
75 TIGR00538 hemN oxygen-independ 99.6 1.1E-13 2.3E-18 142.7 20.3 208 137-353 57-290 (455)
76 PRK08446 coproporphyrinogen II 99.6 8.1E-14 1.8E-18 139.1 18.6 204 138-353 9-231 (350)
77 PRK09249 coproporphyrinogen II 99.6 9.1E-14 2E-18 143.2 19.2 214 130-353 51-290 (453)
78 TIGR00539 hemN_rel putative ox 99.6 9.1E-14 2E-18 139.1 18.4 168 138-313 9-190 (360)
79 PRK09058 coproporphyrinogen II 99.6 8.5E-14 1.8E-18 143.3 18.4 175 129-313 62-253 (449)
80 PLN02951 Molybderin biosynthes 99.6 3.8E-13 8.2E-18 135.6 21.5 171 133-315 62-239 (373)
81 PRK08208 coproporphyrinogen II 99.6 2.2E-13 4.9E-18 139.5 20.1 213 129-353 40-275 (430)
82 PRK13347 coproporphyrinogen II 99.6 2.6E-13 5.6E-18 139.9 20.2 175 129-313 51-242 (453)
83 PRK07379 coproporphyrinogen II 99.6 2E-13 4.3E-18 138.7 18.9 168 137-313 18-205 (400)
84 PRK09057 coproporphyrinogen II 99.5 4.6E-13 1E-17 135.1 19.1 168 137-313 12-193 (380)
85 KOG4355 Predicted Fe-S oxidore 99.5 1.3E-13 2.7E-18 136.1 14.3 191 129-324 187-390 (547)
86 PRK08898 coproporphyrinogen II 99.5 1.2E-12 2.6E-17 132.7 21.3 168 137-313 27-211 (394)
87 TIGR02668 moaA_archaeal probab 99.5 5.8E-13 1.3E-17 129.7 18.1 169 132-313 13-186 (302)
88 TIGR01210 conserved hypothetic 99.5 2.5E-12 5.4E-17 126.8 21.0 197 128-338 14-243 (313)
89 PRK06294 coproporphyrinogen II 99.5 5.7E-13 1.2E-17 134.0 16.4 217 130-356 8-246 (370)
90 PRK06582 coproporphyrinogen II 99.5 1.5E-12 3.3E-17 131.9 17.2 175 130-315 13-203 (390)
91 PRK05301 pyrroloquinoline quin 99.5 1.8E-11 3.8E-16 123.1 24.3 171 129-310 16-189 (378)
92 PRK08629 coproporphyrinogen II 99.4 8.9E-12 1.9E-16 127.9 21.1 178 130-316 54-241 (433)
93 COG2896 MoaA Molybdenum cofact 99.4 6.3E-12 1.4E-16 123.6 18.5 174 129-314 9-190 (322)
94 COG1032 Fe-S oxidoreductase [E 99.4 2.3E-12 5E-17 131.3 15.7 182 129-315 198-395 (490)
95 TIGR01290 nifB nitrogenase cof 99.4 5.5E-11 1.2E-15 122.4 23.9 215 117-339 12-256 (442)
96 TIGR02109 PQQ_syn_pqqE coenzym 99.4 9E-11 2E-15 117.0 22.4 170 129-309 7-179 (358)
97 COG1242 Predicted Fe-S oxidore 99.3 1.4E-10 3E-15 111.0 18.6 194 90-310 6-218 (312)
98 COG0635 HemN Coproporphyrinoge 99.3 1.2E-10 2.5E-15 119.1 18.0 170 137-315 42-230 (416)
99 COG1856 Uncharacterized homolo 99.3 2.3E-10 4.9E-15 106.5 16.9 203 128-340 10-216 (275)
100 TIGR02495 NrdG2 anaerobic ribo 99.3 5.3E-10 1.1E-14 101.6 19.0 163 129-303 16-183 (191)
101 TIGR03470 HpnH hopanoid biosyn 99.2 1.4E-09 3.1E-14 107.4 22.1 170 130-313 29-201 (318)
102 TIGR02493 PFLA pyruvate format 99.2 1.1E-09 2.5E-14 102.6 20.3 198 130-340 16-234 (235)
103 TIGR01211 ELP3 histone acetylt 99.2 6.8E-10 1.5E-14 116.3 19.7 176 128-312 67-297 (522)
104 COG2516 Biotin synthase-relate 99.2 5.1E-10 1.1E-14 108.9 15.6 202 129-341 29-249 (339)
105 PRK11145 pflA pyruvate formate 99.2 2.1E-09 4.6E-14 101.8 19.3 205 132-346 23-245 (246)
106 TIGR03822 AblA_like_2 lysine-2 99.1 5.1E-09 1.1E-13 103.7 20.4 190 103-315 67-269 (321)
107 PRK14456 ribosomal RNA large s 99.1 1E-08 2.2E-13 103.4 21.3 201 135-346 127-346 (368)
108 PRK14469 ribosomal RNA large s 99.1 1.1E-08 2.4E-13 102.2 21.0 203 132-346 104-318 (343)
109 PRK14463 ribosomal RNA large s 99.1 1.8E-08 3.8E-13 101.0 22.3 205 131-346 105-318 (349)
110 PRK14455 ribosomal RNA large s 99.1 2.2E-08 4.8E-13 100.6 22.8 200 135-346 115-330 (356)
111 COG0535 Predicted Fe-S oxidore 99.1 2.8E-08 6.1E-13 97.1 21.6 192 132-335 22-218 (347)
112 TIGR03278 methan_mark_10 putat 99.0 3.7E-08 7.9E-13 100.4 21.5 211 136-360 29-259 (404)
113 TIGR03821 AblA_like_1 lysine-2 99.0 1.6E-08 3.5E-13 100.2 17.8 185 131-335 98-293 (321)
114 PRK14460 ribosomal RNA large s 99.0 1.2E-07 2.5E-12 95.3 22.0 202 133-345 106-324 (354)
115 PRK14466 ribosomal RNA large s 98.9 2.1E-07 4.5E-12 93.0 22.5 205 130-345 104-317 (345)
116 PRK14468 ribosomal RNA large s 98.9 1.4E-07 3.1E-12 94.3 21.4 203 132-345 96-313 (343)
117 PRK13762 tRNA-modifying enzyme 98.9 7.4E-08 1.6E-12 95.6 19.2 206 137-354 66-304 (322)
118 TIGR00238 KamA family protein. 98.9 3.4E-08 7.3E-13 98.3 16.8 169 129-315 113-292 (331)
119 PRK14457 ribosomal RNA large s 98.9 4.4E-07 9.5E-12 90.9 22.4 205 129-346 101-323 (345)
120 PRK13758 anaerobic sulfatase-m 98.8 4.3E-07 9.4E-12 90.9 21.4 192 133-332 9-215 (370)
121 COG2100 Predicted Fe-S oxidore 98.8 1.3E-07 2.8E-12 92.6 16.7 200 136-344 114-331 (414)
122 PRK14470 ribosomal RNA large s 98.8 6.5E-07 1.4E-11 89.3 22.3 193 133-338 101-305 (336)
123 PRK14459 ribosomal RNA large s 98.8 6.9E-07 1.5E-11 90.2 22.4 201 135-345 127-351 (373)
124 TIGR00048 radical SAM enzyme, 98.8 5.2E-07 1.1E-11 90.7 21.3 203 133-346 109-326 (355)
125 PRK14453 chloramphenicol/florf 98.8 7.6E-07 1.7E-11 89.2 19.5 203 134-346 105-323 (347)
126 TIGR03820 lys_2_3_AblA lysine- 98.7 6.7E-07 1.5E-11 91.4 18.6 181 104-306 88-279 (417)
127 COG1243 ELP3 Histone acetyltra 98.7 1.2E-06 2.5E-11 89.4 18.8 197 92-310 47-287 (515)
128 COG4277 Predicted DNA-binding 98.7 3.3E-07 7.2E-12 88.8 13.5 170 134-313 59-256 (404)
129 COG1180 PflA Pyruvate-formate 98.6 5.9E-06 1.3E-10 79.7 20.5 206 129-349 35-248 (260)
130 PRK14467 ribosomal RNA large s 98.6 8.8E-06 1.9E-10 81.7 22.0 202 132-345 102-321 (348)
131 COG2108 Uncharacterized conser 98.6 7.4E-07 1.6E-11 87.3 13.7 163 132-312 31-201 (353)
132 COG1031 Uncharacterized Fe-S o 98.6 2.3E-06 4.9E-11 87.2 17.1 183 130-313 184-404 (560)
133 PRK13745 anaerobic sulfatase-m 98.6 5.4E-06 1.2E-10 84.8 19.5 170 135-313 20-204 (412)
134 COG0731 Fe-S oxidoreductases [ 98.6 3.6E-06 7.8E-11 82.3 17.2 212 137-358 32-261 (296)
135 PRK14464 ribosomal RNA large s 98.6 4.8E-06 1E-10 83.3 18.5 200 135-346 102-310 (344)
136 PRK14462 ribosomal RNA large s 98.5 1.9E-05 4E-10 79.5 20.4 202 133-345 114-330 (356)
137 TIGR02494 PFLE_PFLC glycyl-rad 98.4 9.3E-06 2E-10 78.9 17.0 172 157-340 106-293 (295)
138 PRK11194 ribosomal RNA large s 98.4 4.5E-05 9.7E-10 77.3 22.3 201 135-346 109-330 (372)
139 PRK14454 ribosomal RNA large s 98.3 7.8E-05 1.7E-09 74.7 21.2 203 131-346 103-319 (342)
140 PRK14465 ribosomal RNA large s 98.3 0.0001 2.2E-09 73.9 20.9 199 135-345 111-321 (342)
141 KOG2876 Molybdenum cofactor bi 98.3 7.8E-07 1.7E-11 85.0 5.3 171 130-313 10-190 (323)
142 COG1244 Predicted Fe-S oxidore 98.3 2.1E-05 4.6E-10 77.2 15.0 173 128-310 46-243 (358)
143 cd03174 DRE_TIM_metallolyase D 98.2 5.2E-05 1.1E-09 72.0 16.4 147 156-310 15-166 (265)
144 PRK14461 ribosomal RNA large s 98.2 0.00018 4E-09 72.5 20.7 199 135-345 113-344 (371)
145 COG1313 PflX Uncharacterized F 98.2 2.6E-05 5.5E-10 75.7 13.5 198 137-346 126-332 (335)
146 PRK10076 pyruvate formate lyas 98.2 0.00021 4.5E-09 67.1 18.6 180 156-347 18-211 (213)
147 COG1533 SplB DNA repair photol 98.1 0.00013 2.8E-09 71.8 17.2 170 135-309 35-218 (297)
148 COG1509 KamA Lysine 2,3-aminom 98.0 0.00022 4.7E-09 71.2 15.5 179 103-305 90-282 (369)
149 COG0641 AslB Arylsulfatase reg 97.9 0.0016 3.5E-08 66.2 19.6 189 136-335 14-216 (378)
150 PF13353 Fer4_12: 4Fe-4S singl 97.8 5.1E-05 1.1E-09 65.0 7.0 70 136-207 12-84 (139)
151 TIGR03365 Bsubt_queE 7-cyano-7 97.8 0.00034 7.5E-09 66.5 12.3 132 129-284 23-160 (238)
152 COG1625 Fe-S oxidoreductase, r 97.7 0.00063 1.4E-08 69.1 14.1 142 194-340 95-243 (414)
153 PRK05692 hydroxymethylglutaryl 97.6 0.0013 2.9E-08 64.3 14.3 141 156-309 22-174 (287)
154 PF13394 Fer4_14: 4Fe-4S singl 97.6 6.3E-05 1.4E-09 63.0 4.3 80 135-216 4-88 (119)
155 TIGR02826 RNR_activ_nrdG3 anae 97.6 0.00046 9.9E-09 61.2 9.7 96 129-236 15-113 (147)
156 COG0820 Predicted Fe-S-cluster 97.4 0.0064 1.4E-07 61.0 16.2 170 136-312 108-292 (349)
157 cd07938 DRE_TIM_HMGL 3-hydroxy 97.4 0.005 1.1E-07 59.9 14.7 144 156-309 16-168 (274)
158 PLN02746 hydroxymethylglutaryl 97.4 0.0089 1.9E-07 60.2 16.6 142 156-310 64-217 (347)
159 cd07939 DRE_TIM_NifV Streptomy 97.3 0.0068 1.5E-07 58.2 13.8 138 156-309 16-158 (259)
160 COG5014 Predicted Fe-S oxidore 97.2 0.0022 4.8E-08 58.3 9.4 154 136-303 48-213 (228)
161 cd07940 DRE_TIM_IPMS 2-isoprop 97.2 0.012 2.5E-07 56.9 15.2 142 156-310 16-163 (268)
162 cd07948 DRE_TIM_HCS Saccharomy 97.2 0.027 5.9E-07 54.5 17.6 138 156-309 18-160 (262)
163 TIGR03279 cyano_FeS_chp putati 97.2 0.0056 1.2E-07 63.1 13.1 78 221-302 127-206 (433)
164 TIGR02090 LEU1_arch isopropylm 97.2 0.0086 1.9E-07 60.5 14.3 142 156-310 18-161 (363)
165 TIGR02491 NrdG anaerobic ribon 97.1 0.0033 7.2E-08 55.8 9.7 69 137-207 23-95 (154)
166 PRK11121 nrdG anaerobic ribonu 97.1 0.0028 6.1E-08 56.4 9.0 79 137-217 24-107 (154)
167 cd07943 DRE_TIM_HOA 4-hydroxy- 97.0 0.032 7E-07 53.6 16.2 138 156-309 18-160 (263)
168 PRK08195 4-hyroxy-2-oxovalerat 97.0 0.032 6.9E-07 55.9 16.0 138 156-310 21-164 (337)
169 cd07944 DRE_TIM_HOA_like 4-hyd 96.9 0.029 6.4E-07 54.3 15.0 140 156-310 16-158 (266)
170 TIGR02660 nifV_homocitr homoci 96.9 0.027 5.9E-07 56.9 15.2 138 156-309 19-161 (365)
171 PRK11858 aksA trans-homoaconit 96.9 0.032 6.9E-07 56.7 15.7 139 156-310 22-165 (378)
172 TIGR03217 4OH_2_O_val_ald 4-hy 96.9 0.041 8.9E-07 55.1 16.0 136 156-310 20-163 (333)
173 PRK09389 (R)-citramalate synth 96.3 0.083 1.8E-06 55.6 14.4 138 156-309 20-162 (488)
174 PF00682 HMGL-like: HMGL-like 96.2 0.018 3.9E-07 54.1 8.2 143 156-310 10-157 (237)
175 cd07945 DRE_TIM_CMS Leptospira 96.2 0.19 4.1E-06 49.1 15.0 137 156-310 15-167 (280)
176 PRK00915 2-isopropylmalate syn 95.9 0.58 1.2E-05 49.6 18.2 138 156-309 22-168 (513)
177 cd07937 DRE_TIM_PC_TC_5S Pyruv 95.8 0.25 5.3E-06 48.0 13.8 139 156-310 17-169 (275)
178 PRK09282 pyruvate carboxylase 95.4 0.45 9.7E-06 51.3 15.4 138 156-309 22-173 (592)
179 cd07941 DRE_TIM_LeuA3 Desulfob 95.3 0.77 1.7E-05 44.5 15.6 145 156-310 16-171 (273)
180 PRK12331 oxaloacetate decarbox 95.2 0.63 1.4E-05 48.5 15.1 138 156-309 22-173 (448)
181 PF04481 DUF561: Protein of un 95.1 0.67 1.5E-05 43.8 13.4 126 157-307 24-149 (242)
182 TIGR01108 oadA oxaloacetate de 95.0 0.74 1.6E-05 49.6 15.6 138 156-309 17-168 (582)
183 COG0119 LeuA Isopropylmalate/h 95.0 0.3 6.5E-06 50.3 12.1 141 156-309 20-165 (409)
184 TIGR00973 leuA_bact 2-isopropy 95.0 1.6 3.4E-05 46.1 17.7 138 156-309 19-165 (494)
185 COG0602 NrdG Organic radical a 95.0 0.077 1.7E-06 49.8 7.1 70 129-205 23-98 (212)
186 TIGR01182 eda Entner-Doudoroff 94.9 0.66 1.4E-05 43.4 13.1 112 157-310 17-128 (204)
187 PF01081 Aldolase: KDPG and KH 94.6 0.59 1.3E-05 43.5 11.9 112 157-310 17-128 (196)
188 PRK08091 ribulose-phosphate 3- 94.6 1.1 2.4E-05 42.6 13.9 158 157-344 22-179 (228)
189 PRK06015 keto-hydroxyglutarate 94.4 1 2.2E-05 42.1 13.0 113 157-311 13-125 (201)
190 PRK12344 putative alpha-isopro 94.4 1.7 3.6E-05 46.3 16.3 140 156-309 23-177 (524)
191 PRK14041 oxaloacetate decarbox 94.4 1.5 3.2E-05 46.1 15.6 138 156-309 21-172 (467)
192 cd04731 HisF The cyclase subun 94.1 2 4.4E-05 40.5 14.8 134 159-312 26-171 (243)
193 PRK14024 phosphoribosyl isomer 94.0 0.99 2.2E-05 42.9 12.4 163 159-349 31-197 (241)
194 PRK14040 oxaloacetate decarbox 93.8 1.5 3.2E-05 47.4 14.5 138 156-309 23-174 (593)
195 PRK12330 oxaloacetate decarbox 93.7 1.4 3.1E-05 46.6 13.9 138 156-309 23-174 (499)
196 PLN03228 methylthioalkylmalate 93.6 1.3 2.9E-05 46.9 13.5 135 156-309 102-258 (503)
197 TIGR03572 WbuZ glycosyl amidat 93.3 2.8 6E-05 39.3 14.0 164 160-353 30-207 (232)
198 TIGR00735 hisF imidazoleglycer 93.2 2.4 5.2E-05 40.5 13.6 130 160-310 30-175 (254)
199 PRK00748 1-(5-phosphoribosyl)- 93.1 1.7 3.7E-05 40.5 12.3 131 159-310 29-166 (233)
200 PRK07114 keto-hydroxyglutarate 93.1 2.3 5E-05 40.3 13.0 116 157-310 24-139 (222)
201 cd02810 DHOD_DHPD_FMN Dihydroo 93.0 2.4 5.3E-05 40.9 13.5 164 189-361 79-261 (289)
202 PRK06806 fructose-bisphosphate 92.9 5.1 0.00011 39.3 15.6 168 157-349 26-207 (281)
203 PRK05718 keto-hydroxyglutarate 92.9 2.2 4.8E-05 40.1 12.5 112 157-310 24-135 (212)
204 cd00452 KDPG_aldolase KDPG and 92.8 3.9 8.4E-05 37.3 13.9 113 157-311 13-125 (190)
205 TIGR00977 LeuA_rel 2-isopropyl 92.8 6.3 0.00014 42.0 17.3 140 156-309 19-173 (526)
206 TIGR01163 rpe ribulose-phospha 92.6 4.3 9.3E-05 36.9 14.0 76 157-237 8-84 (210)
207 COG0800 Eda 2-keto-3-deoxy-6-p 92.6 1.3 2.9E-05 41.6 10.5 112 157-310 22-133 (211)
208 cd04732 HisA HisA. Phosphorib 92.3 1.9 4.1E-05 40.1 11.4 131 159-310 28-166 (234)
209 PRK14042 pyruvate carboxylase 92.3 1.4 3E-05 47.7 11.6 81 157-238 23-115 (596)
210 PF05853 DUF849: Prokaryotic p 92.2 4 8.6E-05 39.8 13.8 142 156-301 22-196 (272)
211 PF00834 Ribul_P_3_epim: Ribul 92.2 2 4.2E-05 40.1 11.2 156 157-344 9-166 (201)
212 PRK12581 oxaloacetate decarbox 91.8 3.6 7.8E-05 43.3 13.7 137 157-309 32-182 (468)
213 TIGR01859 fruc_bis_ald_ fructo 91.7 8.5 0.00018 37.7 15.5 167 157-349 24-207 (282)
214 cd07947 DRE_TIM_Re_CS Clostrid 91.7 1.7 3.6E-05 42.6 10.5 131 157-309 18-169 (279)
215 PRK06552 keto-hydroxyglutarate 91.6 5.5 0.00012 37.4 13.5 112 157-310 22-136 (213)
216 TIGR00970 leuA_yeast 2-isoprop 91.5 6.4 0.00014 42.3 15.5 140 156-305 44-199 (564)
217 PRK14057 epimerase; Provisiona 91.4 4 8.6E-05 39.6 12.6 125 157-309 29-160 (254)
218 cd07942 DRE_TIM_LeuA Mycobacte 91.3 7.6 0.00017 38.1 14.7 138 156-309 19-181 (284)
219 PTZ00314 inosine-5'-monophosph 91.2 5.2 0.00011 42.3 14.3 129 161-313 241-376 (495)
220 PLN02321 2-isopropylmalate syn 91.1 6.6 0.00014 42.8 15.2 140 156-309 104-259 (632)
221 TIGR02146 LysS_fung_arch homoc 90.9 13 0.00029 36.5 16.4 142 156-310 16-159 (344)
222 cd00377 ICL_PEPM Members of th 90.8 2.1 4.5E-05 41.0 10.0 184 166-363 22-241 (243)
223 PRK02083 imidazole glycerol ph 90.7 8.1 0.00018 36.7 14.1 131 159-310 29-173 (253)
224 PLN02446 (5-phosphoribosyl)-5- 90.6 4.1 9E-05 39.6 11.9 165 159-354 42-218 (262)
225 COG1856 Uncharacterized homolo 90.2 4.4 9.5E-05 38.7 11.3 110 193-309 136-251 (275)
226 COG0685 MetF 5,10-methylenetet 90.2 3.2 6.9E-05 40.8 11.0 99 157-269 89-199 (291)
227 PRK02227 hypothetical protein; 89.6 14 0.0003 35.5 14.3 169 165-351 12-189 (238)
228 TIGR00007 phosphoribosylformim 89.3 6.8 0.00015 36.5 12.1 131 160-310 28-165 (230)
229 TIGR03128 RuMP_HxlA 3-hexulose 89.3 9.3 0.0002 34.9 12.8 119 157-310 9-133 (206)
230 PRK08005 epimerase; Validated 89.3 19 0.00042 33.8 15.1 116 157-296 10-126 (210)
231 cd00739 DHPS DHPS subgroup of 89.2 9.4 0.0002 36.8 13.2 77 156-237 20-101 (257)
232 TIGR01302 IMP_dehydrog inosine 89.1 6.2 0.00013 41.1 12.7 130 160-313 223-359 (450)
233 PRK13585 1-(5-phosphoribosyl)- 89.1 7.9 0.00017 36.3 12.4 130 160-310 32-169 (241)
234 TIGR02320 PEP_mutase phosphoen 88.8 6 0.00013 38.9 11.7 189 173-371 38-263 (285)
235 cd04740 DHOD_1B_like Dihydroor 88.8 9.8 0.00021 36.9 13.2 167 158-346 100-289 (296)
236 PF04476 DUF556: Protein of un 88.6 24 0.00051 33.9 15.7 168 165-351 12-189 (235)
237 PRK08883 ribulose-phosphate 3- 88.4 22 0.00047 33.5 14.8 112 157-292 9-122 (220)
238 TIGR01303 IMP_DH_rel_1 IMP deh 88.3 5 0.00011 42.2 11.5 133 160-313 224-360 (475)
239 PRK08745 ribulose-phosphate 3- 88.3 19 0.00041 34.1 14.4 116 157-296 13-130 (223)
240 PRK01033 imidazole glycerol ph 88.3 16 0.00034 35.1 14.1 130 160-310 30-172 (258)
241 cd04824 eu_ALAD_PBGS_cysteine_ 88.3 5.1 0.00011 39.9 10.7 56 156-211 47-110 (320)
242 PRK09283 delta-aminolevulinic 88.3 5.2 0.00011 40.0 10.8 53 157-211 56-115 (323)
243 COG0159 TrpA Tryptophan syntha 88.2 3.6 7.8E-05 40.1 9.5 148 195-349 4-179 (265)
244 TIGR01496 DHPS dihydropteroate 88.0 12 0.00026 36.1 13.0 78 156-238 19-101 (257)
245 PF00478 IMPDH: IMP dehydrogen 88.0 1.8 3.9E-05 43.9 7.6 135 160-313 107-243 (352)
246 PF04476 DUF556: Protein of un 87.8 5.7 0.00012 38.0 10.4 162 153-337 60-233 (235)
247 cd00950 DHDPS Dihydrodipicolin 87.8 4.5 9.7E-05 39.1 10.1 78 222-310 24-102 (284)
248 cd00945 Aldolase_Class_I Class 87.7 18 0.0004 31.9 13.4 131 158-310 11-149 (201)
249 cd04724 Tryptophan_synthase_al 87.6 3 6.5E-05 39.7 8.6 94 157-251 11-126 (242)
250 TIGR03249 KdgD 5-dehydro-4-deo 87.6 5 0.00011 39.2 10.4 92 207-309 7-105 (296)
251 PRK11613 folP dihydropteroate 87.5 13 0.00029 36.5 13.2 139 156-303 34-208 (282)
252 PRK02227 hypothetical protein; 87.5 9.2 0.0002 36.7 11.6 162 153-337 60-232 (238)
253 TIGR01037 pyrD_sub1_fam dihydr 87.4 12 0.00025 36.5 12.8 115 187-310 70-189 (300)
254 cd04723 HisA_HisF Phosphoribos 87.4 8.2 0.00018 36.5 11.4 128 159-310 34-165 (233)
255 PRK07807 inosine 5-monophospha 87.4 6.6 0.00014 41.4 11.7 133 160-313 226-362 (479)
256 PRK07565 dihydroorotate dehydr 87.4 17 0.00036 36.2 14.1 162 190-362 84-258 (334)
257 TIGR00262 trpA tryptophan synt 87.2 9.7 0.00021 36.7 11.9 141 157-302 21-196 (256)
258 cd00331 IGPS Indole-3-glycerol 87.1 22 0.00047 32.8 13.9 121 157-310 28-148 (217)
259 KOG2535 RNA polymerase II elon 86.8 11 0.00023 38.3 12.0 120 160-285 153-296 (554)
260 cd00384 ALAD_PBGS Porphobilino 86.8 7.7 0.00017 38.6 11.0 53 157-211 48-107 (314)
261 PRK00043 thiE thiamine-phospha 86.8 18 0.0004 32.8 13.1 113 160-313 21-134 (212)
262 PRK13587 1-(5-phosphoribosyl)- 86.8 17 0.00036 34.6 13.1 130 160-310 31-168 (234)
263 PRK09722 allulose-6-phosphate 86.6 22 0.00047 33.9 13.7 116 157-297 12-129 (229)
264 PRK05096 guanosine 5'-monophos 86.5 3 6.6E-05 42.0 8.1 72 159-240 107-180 (346)
265 KOG2550 IMP dehydrogenase/GMP 86.2 2.4 5.3E-05 43.6 7.3 102 160-270 250-353 (503)
266 PRK14114 1-(5-phosphoribosyl)- 85.7 12 0.00026 35.8 11.6 162 159-354 29-199 (241)
267 cd02803 OYE_like_FMN_family Ol 85.6 15 0.00032 36.1 12.6 52 261-312 195-250 (327)
268 PRK05581 ribulose-phosphate 3- 85.6 29 0.00062 31.8 14.7 77 157-238 13-90 (220)
269 PLN02334 ribulose-phosphate 3- 85.5 5.3 0.00012 37.5 9.0 130 158-317 18-152 (229)
270 PRK03170 dihydrodipicolinate s 85.5 7.4 0.00016 37.8 10.3 77 222-309 25-102 (292)
271 cd00429 RPE Ribulose-5-phospha 85.1 29 0.00062 31.3 15.8 77 156-237 8-85 (211)
272 PF00977 His_biosynth: Histidi 84.9 9.2 0.0002 36.0 10.3 168 157-354 26-202 (229)
273 TIGR00126 deoC deoxyribose-pho 84.8 35 0.00076 32.0 17.8 174 157-364 15-195 (211)
274 cd00537 MTHFR Methylenetetrahy 84.4 8.8 0.00019 37.0 10.1 49 158-206 71-125 (274)
275 TIGR00676 fadh2 5,10-methylene 84.1 6.8 0.00015 38.0 9.2 111 157-285 70-192 (272)
276 PRK08185 hypothetical protein; 84.1 45 0.00098 32.8 15.9 132 157-309 21-168 (283)
277 TIGR01303 IMP_DH_rel_1 IMP deh 83.9 21 0.00045 37.7 13.3 174 157-357 159-342 (475)
278 PRK06801 hypothetical protein; 83.8 35 0.00077 33.6 14.1 169 157-347 26-208 (286)
279 PRK05458 guanosine 5'-monophos 83.7 23 0.00049 35.6 12.9 133 161-313 97-233 (326)
280 cd00564 TMP_TenI Thiamine mono 83.7 22 0.00048 31.4 11.8 66 159-236 11-76 (196)
281 cd04739 DHOD_like Dihydroorota 83.6 42 0.00091 33.4 14.8 170 159-346 111-296 (325)
282 PRK07259 dihydroorotate dehydr 83.3 14 0.00031 36.0 11.2 168 158-345 102-291 (301)
283 PRK03620 5-dehydro-4-deoxygluc 83.3 12 0.00027 36.7 10.9 77 222-309 31-107 (303)
284 PRK03739 2-isopropylmalate syn 82.7 74 0.0016 34.2 17.4 138 156-306 48-204 (552)
285 cd00959 DeoC 2-deoxyribose-5-p 82.5 40 0.00087 31.0 17.4 168 157-359 14-189 (203)
286 PF00701 DHDPS: Dihydrodipicol 82.0 7.3 0.00016 37.7 8.6 78 222-310 25-103 (289)
287 TIGR00677 fadh2_euk methylenet 81.9 10 0.00022 37.1 9.5 110 158-285 72-196 (281)
288 cd02071 MM_CoA_mut_B12_BD meth 81.9 11 0.00023 31.9 8.5 67 164-238 41-108 (122)
289 cd00954 NAL N-Acetylneuraminic 81.3 16 0.00035 35.4 10.7 77 222-309 24-102 (288)
290 PRK13111 trpA tryptophan synth 81.0 38 0.00083 32.7 13.0 47 222-269 29-85 (258)
291 PRK05567 inosine 5'-monophosph 80.9 23 0.0005 37.3 12.4 133 161-313 228-363 (486)
292 PLN02617 imidazole glycerol ph 80.7 35 0.00075 36.7 13.7 146 156-310 263-458 (538)
293 cd00408 DHDPS-like Dihydrodipi 80.6 12 0.00025 36.0 9.4 78 222-310 21-99 (281)
294 PRK07455 keto-hydroxyglutarate 80.5 46 0.001 30.4 14.4 112 157-310 21-132 (187)
295 PRK02506 dihydroorotate dehydr 80.4 30 0.00066 34.2 12.4 187 168-362 31-260 (310)
296 TIGR00640 acid_CoA_mut_C methy 80.4 17 0.00036 31.5 9.4 69 163-238 43-111 (132)
297 COG0106 HisA Phosphoribosylfor 80.3 31 0.00068 33.2 11.9 163 158-349 29-198 (241)
298 PRK07107 inosine 5-monophospha 80.2 6.3 0.00014 41.8 7.9 74 157-239 238-312 (502)
299 cd00958 DhnA Class I fructose- 80.0 17 0.00037 33.9 10.1 130 158-313 74-217 (235)
300 cd04739 DHOD_like Dihydroorota 79.7 49 0.0011 32.9 13.7 162 190-362 82-256 (325)
301 cd04740 DHOD_1B_like Dihydroor 79.7 35 0.00075 33.1 12.4 81 223-311 106-187 (296)
302 PRK07565 dihydroorotate dehydr 79.6 40 0.00087 33.5 13.1 170 158-346 112-298 (334)
303 COG0502 BioB Biotin synthase a 79.5 0.55 1.2E-05 47.1 -0.2 38 143-182 102-140 (335)
304 cd00381 IMPDH IMPDH: The catal 79.3 10 0.00022 37.8 8.8 134 160-313 93-229 (325)
305 TIGR01037 pyrD_sub1_fam dihydr 79.2 45 0.00098 32.4 13.1 170 158-346 101-292 (300)
306 COG4822 CbiK Cobalamin biosynt 79.1 41 0.0009 32.1 12.0 176 156-346 56-233 (265)
307 PTZ00170 D-ribulose-5-phosphat 79.1 7.5 0.00016 36.7 7.4 83 157-243 16-99 (228)
308 cd02930 DCR_FMN 2,4-dienoyl-Co 79.0 31 0.00068 34.6 12.2 54 258-311 188-245 (353)
309 PF02581 TMP-TENI: Thiamine mo 79.0 41 0.00089 30.2 11.9 147 158-349 10-156 (180)
310 PLN02274 inosine-5'-monophosph 78.9 65 0.0014 34.2 15.0 170 158-355 179-363 (505)
311 PRK07315 fructose-bisphosphate 78.8 54 0.0012 32.3 13.5 138 157-310 26-173 (293)
312 PRK06843 inosine 5-monophospha 78.8 7.3 0.00016 40.2 7.6 134 161-313 153-288 (404)
313 PF00290 Trp_syntA: Tryptophan 78.6 6.4 0.00014 38.2 6.8 139 222-366 27-193 (259)
314 KOG2368 Hydroxymethylglutaryl- 78.6 31 0.00066 33.2 11.0 145 157-313 37-192 (316)
315 COG0329 DapA Dihydrodipicolina 78.5 8.9 0.00019 37.8 7.9 77 222-309 28-105 (299)
316 PLN02540 methylenetetrahydrofo 78.2 13 0.00029 40.0 9.6 52 157-208 70-127 (565)
317 TIGR00737 nifR3_yhdG putative 78.2 24 0.00053 34.7 11.0 83 223-310 79-167 (319)
318 COG4474 Uncharacterized protei 78.1 3.7 8.1E-05 37.4 4.6 53 159-217 28-80 (180)
319 PF00478 IMPDH: IMP dehydrogen 78.0 29 0.00063 35.2 11.5 121 164-315 52-180 (352)
320 TIGR00262 trpA tryptophan synt 78.0 25 0.00054 33.9 10.7 82 222-309 27-121 (256)
321 cd02801 DUS_like_FMN Dihydrour 78.0 16 0.00034 33.8 9.1 83 222-310 70-158 (231)
322 TIGR01305 GMP_reduct_1 guanosi 77.4 12 0.00025 37.9 8.3 68 163-239 109-178 (343)
323 cd00951 KDGDH 5-dehydro-4-deox 77.3 25 0.00053 34.3 10.6 76 223-309 25-100 (289)
324 TIGR00674 dapA dihydrodipicoli 77.0 19 0.00042 34.8 9.8 78 222-310 22-100 (285)
325 PF01207 Dus: Dihydrouridine s 76.8 13 0.00028 36.8 8.5 118 223-349 70-190 (309)
326 COG0107 HisF Imidazoleglycerol 76.6 7.9 0.00017 37.1 6.6 83 141-232 138-221 (256)
327 PRK04452 acetyl-CoA decarbonyl 76.5 88 0.0019 31.4 14.6 157 163-346 78-240 (319)
328 PRK07709 fructose-bisphosphate 76.4 82 0.0018 31.0 15.5 170 157-346 26-207 (285)
329 PRK04147 N-acetylneuraminate l 76.3 29 0.00063 33.8 10.8 78 222-310 27-106 (293)
330 TIGR01769 GGGP geranylgeranylg 76.3 17 0.00037 34.1 8.7 73 156-236 130-202 (205)
331 CHL00200 trpA tryptophan synth 76.1 32 0.0007 33.4 10.9 139 157-301 26-199 (263)
332 PF01116 F_bP_aldolase: Fructo 76.1 33 0.00071 33.7 11.1 171 157-346 25-209 (287)
333 cd01299 Met_dep_hydrolase_A Me 76.0 49 0.0011 32.3 12.4 89 157-251 117-212 (342)
334 PRK08195 4-hyroxy-2-oxovalerat 76.0 58 0.0013 32.7 13.1 78 157-238 141-220 (337)
335 PRK00278 trpC indole-3-glycero 76.0 77 0.0017 30.5 13.7 121 158-311 68-188 (260)
336 PRK12999 pyruvate carboxylase; 76.0 43 0.00093 39.3 13.6 136 156-309 551-710 (1146)
337 PRK09140 2-dehydro-3-deoxy-6-p 75.9 68 0.0015 29.8 13.6 112 157-310 19-131 (206)
338 TIGR02313 HpaI-NOT-DapA 2,4-di 75.8 30 0.00066 33.8 10.8 78 222-310 24-102 (294)
339 CHL00200 trpA tryptophan synth 75.6 5.3 0.00012 38.8 5.4 23 331-353 157-180 (263)
340 COG1751 Uncharacterized conser 75.6 40 0.00088 30.5 10.3 111 157-283 10-134 (186)
341 PF01136 Peptidase_U32: Peptid 75.4 21 0.00045 33.2 9.2 68 160-241 2-69 (233)
342 TIGR03572 WbuZ glycosyl amidat 75.2 11 0.00024 35.2 7.3 74 159-238 152-226 (232)
343 PRK05096 guanosine 5'-monophos 74.9 1E+02 0.0022 31.3 14.3 120 163-315 60-182 (346)
344 TIGR00683 nanA N-acetylneurami 74.9 34 0.00075 33.3 10.9 77 222-309 24-102 (290)
345 cd02801 DUS_like_FMN Dihydrour 74.8 58 0.0012 30.0 12.0 136 158-310 65-213 (231)
346 PRK13397 3-deoxy-7-phosphohept 74.7 19 0.00041 34.8 8.8 122 158-307 27-153 (250)
347 cd00952 CHBPH_aldolase Trans-o 74.5 37 0.00081 33.4 11.2 101 222-341 32-133 (309)
348 PRK13586 1-(5-phosphoribosyl)- 74.1 56 0.0012 31.0 11.8 126 160-310 30-166 (232)
349 PRK11320 prpB 2-methylisocitra 74.0 73 0.0016 31.5 12.9 185 166-369 30-255 (292)
350 PLN02417 dihydrodipicolinate s 73.7 38 0.00082 32.8 10.8 77 222-309 25-102 (280)
351 PF06180 CbiK: Cobalt chelatas 73.5 18 0.00039 35.2 8.4 164 157-345 55-236 (262)
352 PF00490 ALAD: Delta-aminolevu 73.0 7.3 0.00016 38.9 5.6 56 157-212 54-116 (324)
353 TIGR00737 nifR3_yhdG putative 73.0 61 0.0013 31.9 12.3 139 157-312 72-224 (319)
354 PRK00366 ispG 4-hydroxy-3-meth 72.7 55 0.0012 33.3 11.7 126 157-310 39-180 (360)
355 PRK10550 tRNA-dihydrouridine s 72.7 37 0.00081 33.7 10.7 85 223-310 79-168 (312)
356 PLN02495 oxidoreductase, actin 72.6 36 0.00077 35.0 10.7 119 189-313 94-217 (385)
357 PF00809 Pterin_bind: Pterin b 72.5 17 0.00038 33.7 7.8 77 157-237 16-97 (210)
358 PLN02591 tryptophan synthase 72.3 12 0.00026 36.1 6.9 16 333-348 146-162 (250)
359 PRK09195 gatY tagatose-bisphos 72.0 81 0.0018 31.0 12.6 166 157-344 26-204 (284)
360 TIGR02311 HpaI 2,4-dihydroxyhe 71.9 76 0.0016 30.4 12.3 133 165-312 25-172 (249)
361 PRK07535 methyltetrahydrofolat 71.9 99 0.0021 29.9 13.4 74 157-238 22-97 (261)
362 PRK13587 1-(5-phosphoribosyl)- 71.7 20 0.00042 34.1 8.1 73 160-238 148-220 (234)
363 TIGR01858 tag_bisphos_ald clas 71.5 1.1E+02 0.0023 30.2 14.7 167 157-344 24-202 (282)
364 PRK06512 thiamine-phosphate py 71.4 67 0.0014 30.2 11.6 114 159-313 25-141 (221)
365 cd02803 OYE_like_FMN_family Ol 71.4 17 0.00037 35.6 7.9 80 157-239 225-311 (327)
366 PF07745 Glyco_hydro_53: Glyco 71.4 67 0.0014 32.4 12.1 89 222-312 113-207 (332)
367 cd04724 Tryptophan_synthase_al 71.2 38 0.00082 32.2 10.0 18 331-348 142-160 (242)
368 cd02940 DHPD_FMN Dihydropyrimi 71.2 80 0.0017 30.9 12.5 101 255-362 151-271 (299)
369 PRK09432 metF 5,10-methylenete 71.0 36 0.00077 33.6 10.0 49 157-205 94-142 (296)
370 cd04733 OYE_like_2_FMN Old yel 70.9 36 0.00077 33.9 10.2 89 223-311 153-257 (338)
371 TIGR01235 pyruv_carbox pyruvat 70.9 60 0.0013 38.1 13.1 137 157-309 550-708 (1143)
372 cd00423 Pterin_binding Pterin 70.7 1E+02 0.0022 29.5 14.0 77 156-237 20-101 (258)
373 TIGR03239 GarL 2-dehydro-3-deo 70.5 92 0.002 29.9 12.5 132 164-312 24-171 (249)
374 cd04735 OYE_like_4_FMN Old yel 70.5 15 0.00033 36.8 7.5 93 157-251 232-327 (353)
375 PF00977 His_biosynth: Histidi 70.4 21 0.00045 33.7 7.9 72 159-236 146-217 (229)
376 COG0821 gcpE 1-hydroxy-2-methy 70.1 42 0.00091 33.9 10.1 125 157-309 33-172 (361)
377 cd00956 Transaldolase_FSA Tran 69.5 43 0.00094 31.3 9.8 79 166-251 115-193 (211)
378 PRK07028 bifunctional hexulose 69.4 1.1E+02 0.0024 31.5 13.7 122 157-311 13-139 (430)
379 COG3246 Uncharacterized conser 69.4 32 0.00069 34.0 9.0 61 156-216 25-85 (298)
380 cd04738 DHOD_2_like Dihydrooro 69.4 1.2E+02 0.0027 30.0 16.3 211 139-362 37-299 (327)
381 TIGR02319 CPEP_Pphonmut carbox 69.2 1.2E+02 0.0027 29.9 13.8 186 166-369 29-254 (294)
382 PRK13753 dihydropteroate synth 69.2 27 0.00059 34.3 8.6 77 156-238 21-102 (279)
383 PF02219 MTHFR: Methylenetetra 69.1 23 0.00049 34.5 8.1 109 158-282 83-208 (287)
384 PRK08318 dihydropyrimidine deh 69.1 1.2E+02 0.0026 31.0 13.9 173 158-346 111-312 (420)
385 TIGR00007 phosphoribosylformim 69.0 20 0.00044 33.3 7.5 73 160-238 145-217 (230)
386 PRK07428 nicotinate-nucleotide 68.9 24 0.00052 34.8 8.2 65 164-239 207-271 (288)
387 PF01729 QRPTase_C: Quinolinat 68.5 26 0.00057 31.7 7.8 65 164-239 91-155 (169)
388 cd04732 HisA HisA. Phosphorib 68.4 23 0.00049 32.8 7.7 74 159-238 145-218 (234)
389 PRK05437 isopentenyl pyrophosp 68.4 95 0.0021 31.3 12.7 135 163-311 80-218 (352)
390 PRK05567 inosine 5'-monophosph 68.4 91 0.002 32.8 13.0 169 161-357 166-345 (486)
391 cd07945 DRE_TIM_CMS Leptospira 68.2 28 0.00061 34.0 8.6 77 158-238 145-222 (280)
392 cd02810 DHOD_DHPD_FMN Dihydroo 68.0 33 0.00072 33.0 9.0 81 157-239 173-272 (289)
393 PRK08610 fructose-bisphosphate 68.0 1.3E+02 0.0028 29.7 14.6 168 157-346 26-207 (286)
394 PTZ00314 inosine-5'-monophosph 67.7 83 0.0018 33.3 12.5 166 163-355 181-356 (495)
395 cd04741 DHOD_1A_like Dihydroor 67.7 1.3E+02 0.0027 29.5 16.4 190 166-362 26-262 (294)
396 PRK05692 hydroxymethylglutaryl 67.7 30 0.00065 33.9 8.6 79 157-239 152-231 (287)
397 cd07938 DRE_TIM_HMGL 3-hydroxy 67.6 29 0.00063 33.7 8.5 78 157-238 146-224 (274)
398 TIGR01501 MthylAspMutase methy 67.2 55 0.0012 28.6 9.3 97 224-349 21-117 (134)
399 cd02932 OYE_YqiM_FMN Old yello 67.1 65 0.0014 32.0 11.1 52 259-310 206-261 (336)
400 PRK08999 hypothetical protein; 67.1 88 0.0019 30.4 11.9 31 280-314 226-257 (312)
401 COG5016 Pyruvate/oxaloacetate 66.8 43 0.00094 34.8 9.7 80 157-237 25-116 (472)
402 PRK00748 1-(5-phosphoribosyl)- 66.6 25 0.00055 32.6 7.7 73 159-237 145-218 (233)
403 PRK01130 N-acetylmannosamine-6 66.5 1.1E+02 0.0023 28.3 12.7 122 164-312 79-204 (221)
404 PF00682 HMGL-like: HMGL-like 66.5 32 0.0007 32.0 8.4 78 157-238 134-212 (237)
405 cd07941 DRE_TIM_LeuA3 Desulfob 66.3 37 0.00079 32.9 8.9 76 158-238 149-226 (273)
406 cd04823 ALAD_PBGS_aspartate_ri 66.2 17 0.00037 36.3 6.5 55 157-211 51-112 (320)
407 PRK12857 fructose-1,6-bisphosp 66.2 1.4E+02 0.003 29.4 14.5 165 157-343 26-203 (284)
408 PRK10415 tRNA-dihydrouridine s 66.2 52 0.0011 32.7 10.2 75 160-239 149-224 (321)
409 TIGR01919 hisA-trpF 1-(5-phosp 66.0 1.3E+02 0.0027 28.8 13.1 162 161-354 32-204 (243)
410 PRK12737 gatY tagatose-bisphos 65.9 1.4E+02 0.0031 29.4 14.6 166 157-344 26-204 (284)
411 PLN02274 inosine-5'-monophosph 65.8 23 0.00051 37.6 8.0 132 160-313 247-383 (505)
412 TIGR00735 hisF imidazoleglycer 65.8 50 0.0011 31.4 9.7 73 158-236 153-226 (254)
413 cd02940 DHPD_FMN Dihydropyrimi 65.8 82 0.0018 30.8 11.4 141 158-310 111-281 (299)
414 TIGR00875 fsa_talC_mipB fructo 65.5 71 0.0015 30.0 10.4 76 169-251 118-193 (213)
415 TIGR00284 dihydropteroate synt 65.4 1.5E+02 0.0032 31.7 13.7 128 160-301 165-305 (499)
416 PRK07259 dihydroorotate dehydr 65.3 1.4E+02 0.003 29.0 15.5 138 164-311 27-190 (301)
417 TIGR02129 hisA_euk phosphoribo 65.3 81 0.0017 30.6 10.9 162 160-354 37-212 (253)
418 PRK13586 1-(5-phosphoribosyl)- 65.2 29 0.00063 32.9 7.8 70 160-236 146-215 (232)
419 PRK12330 oxaloacetate decarbox 65.1 71 0.0015 34.0 11.3 81 157-241 152-234 (499)
420 cd04734 OYE_like_3_FMN Old yel 65.1 1.1E+02 0.0024 30.7 12.3 49 260-310 194-249 (343)
421 PRK10558 alpha-dehydro-beta-de 64.8 1.3E+02 0.0029 28.9 12.4 131 164-312 31-178 (256)
422 PF04131 NanE: Putative N-acet 64.4 1.2E+02 0.0027 28.2 11.4 141 163-349 2-151 (192)
423 PF06180 CbiK: Cobalt chelatas 64.4 50 0.0011 32.1 9.3 132 158-301 120-259 (262)
424 PRK12999 pyruvate carboxylase; 64.0 61 0.0013 38.0 11.5 74 159-238 625-710 (1146)
425 PRK06096 molybdenum transport 64.0 37 0.00079 33.5 8.4 66 162-238 198-263 (284)
426 PF04127 DFP: DNA / pantothena 63.9 11 0.00024 34.6 4.6 128 161-310 31-166 (185)
427 PRK04165 acetyl-CoA decarbonyl 63.7 2E+02 0.0043 30.3 15.0 68 157-235 102-178 (450)
428 PLN02591 tryptophan synthase 63.5 1.5E+02 0.0031 28.7 12.6 122 164-313 97-221 (250)
429 PRK11572 copper homeostasis pr 63.4 1.5E+02 0.0032 28.7 14.0 121 159-310 72-198 (248)
430 TIGR02764 spore_ybaN_pdaB poly 62.9 1.1E+02 0.0025 27.3 12.5 131 164-311 49-189 (191)
431 COG1105 FruK Fructose-1-phosph 62.6 1.2E+02 0.0026 30.3 11.8 81 156-246 110-192 (310)
432 PRK12738 kbaY tagatose-bisphos 62.5 1.6E+02 0.0036 29.0 14.9 166 157-344 26-204 (286)
433 PLN02334 ribulose-phosphate 3- 62.4 49 0.0011 31.0 8.7 79 158-239 123-202 (229)
434 cd04734 OYE_like_3_FMN Old yel 62.4 36 0.00077 34.2 8.2 80 157-239 225-315 (343)
435 PRK13523 NADPH dehydrogenase N 62.4 26 0.00057 35.1 7.3 81 156-239 223-305 (337)
436 COG1902 NemA NADH:flavin oxido 62.3 37 0.00079 34.6 8.3 100 136-239 214-318 (363)
437 KOG4175 Tryptophan synthase al 62.1 1.1E+02 0.0024 29.0 10.6 26 328-355 161-189 (268)
438 cd07940 DRE_TIM_IPMS 2-isoprop 62.0 42 0.00091 32.2 8.4 78 157-238 140-220 (268)
439 TIGR01521 FruBisAldo_II_B fruc 61.7 1.9E+02 0.0041 29.4 14.6 178 157-349 24-234 (347)
440 PRK13111 trpA tryptophan synth 61.6 1.4E+02 0.0031 28.8 11.9 122 163-312 107-230 (258)
441 PRK12290 thiE thiamine-phospha 61.2 1.3E+02 0.0028 31.6 12.1 109 164-313 221-330 (437)
442 cd02931 ER_like_FMN Enoate red 61.2 37 0.0008 34.6 8.2 93 156-251 248-349 (382)
443 PRK14847 hypothetical protein; 60.9 1.9E+02 0.0042 29.2 15.7 137 156-304 50-202 (333)
444 PRK09517 multifunctional thiam 60.9 1.1E+02 0.0025 34.0 12.5 115 161-313 20-138 (755)
445 COG0107 HisF Imidazoleglycerol 60.5 51 0.0011 31.8 8.3 77 157-239 27-103 (256)
446 cd00953 KDG_aldolase KDG (2-ke 59.7 93 0.002 30.1 10.4 48 255-309 49-97 (279)
447 cd02812 PcrB_like PcrB_like pr 59.7 1.2E+02 0.0026 28.8 10.7 74 156-239 131-204 (219)
448 cd04733 OYE_like_2_FMN Old yel 59.3 49 0.0011 32.9 8.6 81 156-239 232-322 (338)
449 PRK06843 inosine 5-monophospha 59.3 2.2E+02 0.0049 29.5 15.6 111 222-356 155-269 (404)
450 KOG0369 Pyruvate carboxylase [ 59.2 75 0.0016 35.2 10.1 176 158-344 716-938 (1176)
451 cd03316 MR_like Mandelate race 59.2 1.7E+02 0.0037 28.9 12.5 153 158-346 139-295 (357)
452 TIGR01334 modD putative molybd 59.0 52 0.0011 32.3 8.5 66 162-238 197-262 (277)
453 TIGR02320 PEP_mutase phosphoen 58.9 35 0.00075 33.6 7.3 74 158-239 167-240 (285)
454 PRK05848 nicotinate-nucleotide 58.8 39 0.00086 33.0 7.6 65 164-239 193-257 (273)
455 cd06557 KPHMT-like Ketopantoat 58.5 92 0.002 30.1 10.0 15 166-181 25-39 (254)
456 PLN02746 hydroxymethylglutaryl 58.4 53 0.0011 33.3 8.6 48 157-208 194-241 (347)
457 PF00072 Response_reg: Respons 58.2 87 0.0019 24.4 8.7 39 196-236 59-97 (112)
458 PF01729 QRPTase_C: Quinolinat 58.1 1.3E+02 0.0027 27.3 10.3 90 195-311 66-156 (169)
459 cd03174 DRE_TIM_metallolyase D 58.0 47 0.001 31.1 7.9 78 157-238 143-221 (265)
460 COG0159 TrpA Tryptophan syntha 57.9 1.8E+02 0.0038 28.5 11.7 143 157-303 28-204 (265)
461 TIGR01334 modD putative molybd 57.9 87 0.0019 30.7 9.8 90 194-310 174-263 (277)
462 PRK10550 tRNA-dihydrouridine s 57.9 73 0.0016 31.6 9.5 103 159-265 147-254 (312)
463 COG0352 ThiE Thiamine monophos 57.9 1.7E+02 0.0036 27.6 13.3 110 163-313 24-134 (211)
464 TIGR01306 GMP_reduct_2 guanosi 57.9 54 0.0012 32.9 8.5 130 159-313 93-230 (321)
465 PRK12656 fructose-6-phosphate 57.8 1.2E+02 0.0027 28.7 10.5 95 168-269 121-215 (222)
466 PLN02495 oxidoreductase, actin 57.8 98 0.0021 31.8 10.6 57 255-316 95-152 (385)
467 PRK01033 imidazole glycerol ph 57.8 42 0.00091 32.2 7.6 72 159-236 151-223 (258)
468 PRK10415 tRNA-dihydrouridine s 57.8 1E+02 0.0022 30.6 10.5 85 224-310 82-169 (321)
469 PF03740 PdxJ: Pyridoxal phosp 57.7 57 0.0012 31.4 8.2 134 159-311 73-215 (239)
470 PRK13125 trpA tryptophan synth 57.5 1.7E+02 0.0037 27.7 11.6 67 194-269 171-238 (244)
471 COG3010 NanE Putative N-acetyl 57.5 14 0.0003 34.9 3.9 135 156-312 28-189 (229)
472 KOG2670 Enolase [Carbohydrate 57.4 2.3E+02 0.0049 28.9 13.4 146 142-296 202-386 (433)
473 TIGR00559 pdxJ pyridoxine 5'-p 57.4 41 0.00088 32.3 7.2 132 159-312 72-214 (237)
474 cd07943 DRE_TIM_HOA 4-hydroxy- 57.3 61 0.0013 31.0 8.6 77 157-238 138-216 (263)
475 PRK13384 delta-aminolevulinic 57.1 27 0.0006 34.9 6.1 54 156-211 57-117 (322)
476 COG0036 Rpe Pentose-5-phosphat 56.9 1.8E+02 0.0039 27.7 15.2 81 157-242 13-94 (220)
477 COG4464 CapC Capsular polysacc 56.9 82 0.0018 30.2 8.9 75 155-230 15-93 (254)
478 TIGR01302 IMP_dehydrog inosine 56.6 2.3E+02 0.0051 29.5 13.3 167 162-355 163-339 (450)
479 cd02933 OYE_like_FMN Old yello 56.4 31 0.00068 34.5 6.7 76 157-239 238-314 (338)
480 PRK13585 1-(5-phosphoribosyl)- 56.3 47 0.001 31.0 7.5 72 161-238 150-221 (241)
481 PRK13398 3-deoxy-7-phosphohept 56.0 95 0.0021 30.2 9.7 128 158-309 39-167 (266)
482 cd03315 MLE_like Muconate lact 55.9 1.5E+02 0.0033 28.0 11.1 146 158-348 85-237 (265)
483 PRK06096 molybdenum transport 55.8 87 0.0019 30.9 9.4 90 194-310 175-264 (284)
484 PF01244 Peptidase_M19: Membra 55.6 1.1E+02 0.0025 30.4 10.4 162 164-344 121-302 (320)
485 cd04731 HisF The cyclase subun 55.6 94 0.002 29.1 9.5 74 158-237 147-221 (243)
486 PRK13396 3-deoxy-7-phosphohept 55.6 1.1E+02 0.0024 31.1 10.3 118 158-305 113-237 (352)
487 PLN02617 imidazole glycerol ph 55.3 46 0.001 35.7 8.0 68 161-234 439-507 (538)
488 cd02932 OYE_YqiM_FMN Old yello 55.3 44 0.00094 33.2 7.5 81 156-239 237-320 (336)
489 cd01301 rDP_like renal dipepti 55.1 2.2E+02 0.0049 28.2 16.3 163 163-343 116-293 (309)
490 TIGR03128 RuMP_HxlA 3-hexulose 54.9 46 0.00099 30.2 7.0 76 157-239 110-186 (206)
491 PRK00311 panB 3-methyl-2-oxobu 54.9 1.5E+02 0.0033 28.8 10.9 10 168-177 30-39 (264)
492 cd04738 DHOD_2_like Dihydrooro 54.8 72 0.0016 31.7 8.9 80 158-239 214-309 (327)
493 PRK04128 1-(5-phosphoribosyl)- 54.6 1.5E+02 0.0032 28.0 10.6 71 161-238 31-101 (228)
494 PRK07896 nicotinate-nucleotide 54.6 70 0.0015 31.6 8.6 64 165-239 211-274 (289)
495 TIGR00167 cbbA ketose-bisphosp 54.5 2.2E+02 0.0049 28.0 14.6 169 157-346 26-210 (288)
496 COG0113 HemB Delta-aminolevuli 54.5 39 0.00086 33.7 6.7 56 156-211 57-119 (330)
497 TIGR02151 IPP_isom_2 isopenten 54.3 1.8E+02 0.0039 29.0 11.7 134 163-311 73-211 (333)
498 cd02811 IDI-2_FMN Isopentenyl- 54.2 1.3E+02 0.0029 29.9 10.6 134 163-310 72-209 (326)
499 PLN02446 (5-phosphoribosyl)-5- 54.0 68 0.0015 31.3 8.3 66 161-232 164-229 (262)
500 cd00947 TBP_aldolase_IIB Tagat 54.0 2.2E+02 0.0049 27.9 14.8 171 157-346 21-200 (276)
No 1
>KOG2672 consensus Lipoate synthase [Coenzyme transport and metabolism]
Probab=100.00 E-value=3.1e-109 Score=776.74 Aligned_cols=330 Identities=58% Similarity=1.015 Sum_probs=317.6
Q ss_pred HHHHhhhCCCCccccccCCCC--CCccccccCC----CCCCCCCcceeecCCCCccHHHHHHHHhccChhhhhhhcCCCC
Q 017200 42 LRARLASESPALSDFIDLQSN--SSYSVEVGTK----KKPLPKPKWMKESIPGGDKYVQIKKKLRELKLHTVCEEAKCPN 115 (375)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~----~~~~~~p~wl~~~~p~~~~~~~~~~~l~~~~L~tvceeA~cpn 115 (375)
|++.|+ .||+|+||++++.+ .++..+.+.+ ..++|+|+|||+++|.|+||++|+..|++++||||||||+|||
T Consensus 19 ~~~~l~-~gPs~~DFv~~d~~~~~~~~~e~~~~~~~~~~~~rlP~WLK~~iP~G~n~~~iK~~lr~l~L~TVCEEArCPN 97 (360)
T KOG2672|consen 19 FKELLA-KGPSFADFVSGDKPLRADWDFEKGRKKREGEERLRLPPWLKTKIPLGENYNKIKKDLRELKLHTVCEEARCPN 97 (360)
T ss_pred hhhhhc-cCCchhhhhcCCcccccccchhhchhhhhccccccCChhhcccCCCCccHHHHHHHHhhCchhhhhhhccCCc
Confidence 788887 99999999999764 2344433333 3578999999999999999999999999999999999999999
Q ss_pred cccccCCCCCCccEEEEeeeCCccCCCCcCCCCCCCCCCCCCCcchHHHHHHHHHhcCCcEEEEEeeeCCCCCcccHHHH
Q 017200 116 LGECWSGGETGTATATIMILGDTCTRGCRFCNVKTSRAPPPPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHF 195 (375)
Q Consensus 116 ~~ec~~~~~~~~~tatfm~i~d~C~~~C~FC~v~~~r~~~~ld~eEi~~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~ 195 (375)
|||||||++++++|||||+|||+|+|+|+||+|+++|.|+++||.||+++|+++++||++|||||||||||++|+|++||
T Consensus 98 iGECWgG~d~~~ATATIMlmGDTCTRGCRFCsVKTsR~PpPlDp~EPeNTAeAIasWgl~YiVlTSVDRDDlpDgGa~Hi 177 (360)
T KOG2672|consen 98 IGECWGGGDKSTATATIMLMGDTCTRGCRFCSVKTSRNPPPLDPNEPENTAEAIASWGLDYIVLTSVDRDDLPDGGANHI 177 (360)
T ss_pred hhhccCCCCCcceeEEEEeecCccccCcceeeeecCCCCcCCCCCCcccHHHHHHHcCCCeEEEEecccccCcCcchHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCcEEEeecCCCCCChHHHHHHHHcCcccccccccchHHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCc
Q 017200 196 AQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGT 275 (375)
Q Consensus 196 ~~lir~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGldv~~hnlEtv~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl 275 (375)
+++|+.||++.|.+.||+|+|||.|+.+.++.+..+|+|+|+||+|||++|.+.||+|+++|+|+|++|++||+..|. +
T Consensus 178 AkTVq~iK~k~p~ilvE~L~pDF~Gd~~~Ve~va~SGLDV~AHNvETVe~Ltp~VRD~RA~yrQSL~VLk~aK~~~P~-l 256 (360)
T KOG2672|consen 178 AKTVQKIKEKAPEILVECLTPDFRGDLKAVEKVAKSGLDVYAHNVETVEELTPFVRDPRANYRQSLSVLKHAKEVKPG-L 256 (360)
T ss_pred HHHHHHHHhhCcccchhhcCccccCchHHHHHHHhcCccceecchhhHHhcchhhcCcccchHHhHHHHHHHHhhCCC-c
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999997 9
Q ss_pred eEEEeEEEecCCCHHHHHHHHHHHHHcCCcEEeeecCCCCCCCCCCccccCCHHHHHHHHHHHHHhhhhhhccchhhhhh
Q 017200 276 LTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQYMRPSKRHMPVSEYITPEAFERYRALGMEMGFRYVASGPMVRSS 355 (375)
Q Consensus 276 ~tkt~imvGlGET~ee~~etl~~Lrelgvd~v~i~qYl~P~~~~~~v~~~v~pe~~~~l~~~a~~~gf~~~~sgp~vrss 355 (375)
.++|+||+|+|||+|++.++|++||+.++|+++|||||||+++|++|.+||+|+.|++|++++.++||+|+|||||||||
T Consensus 257 itktsiMlglgetdeei~~tl~dLr~~~vdv~t~gqym~ptkrhl~v~eyvtpekf~~w~~~~~~lgf~y~AsgplvrSs 336 (360)
T KOG2672|consen 257 ITKTSIMLGLGETDEEIKQTLKDLRAADVDVVTFGQYMQPTKRHLKVKEYVTPEKFDYWKEYGEELGFLYVASGPLVRSS 336 (360)
T ss_pred eehhhhhhccCCCHHHHHHHHHHHHHcCCcEEecccccCCccccceeEEeeCHHHHHHHHHHhhhcceEEeccCceeech
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhHHHHHHHHhhhhcc
Q 017200 356 YKVVGWCYYLIFNYRSTN 373 (375)
Q Consensus 356 y~a~~~~~~~~~~~~~~~ 373 (375)
|+||||||+|+|++|+.+
T Consensus 337 ykage~~i~~~l~~r~~~ 354 (360)
T KOG2672|consen 337 YKAGEYFIKNVLEKRKSK 354 (360)
T ss_pred hhhhHHHHHHHHHhcccC
Confidence 999999999999999986
No 2
>COG0320 LipA Lipoate synthase [Coenzyme metabolism]
Probab=100.00 E-value=6.4e-96 Score=687.79 Aligned_cols=287 Identities=53% Similarity=0.933 Sum_probs=281.1
Q ss_pred CCCCCCCcceeecCCCCccHHHHHHHHhccChhhhhhhcCCCCcccccCCCCCCccEEEEeeeCCccCCCCcCCCCCCCC
Q 017200 73 KKPLPKPKWMKESIPGGDKYVQIKKKLRELKLHTVCEEAKCPNLGECWSGGETGTATATIMILGDTCTRGCRFCNVKTSR 152 (375)
Q Consensus 73 ~~~~~~p~wl~~~~p~~~~~~~~~~~l~~~~L~tvceeA~cpn~~ec~~~~~~~~~tatfm~i~d~C~~~C~FC~v~~~r 152 (375)
...+++|+|||+++|.|.+|.++++++++++||||||||.||||+|||+.+ |||||+||+.|||+|.||.|.+++
T Consensus 19 ~~~~rkP~Wlr~k~p~~~~~~~~k~~~r~~~L~TVCEEA~CPNi~ECw~~~-----tATFmImG~~CTR~C~FC~V~~g~ 93 (306)
T COG0320 19 EELLRKPEWLKVKAPTGSRYQEIKEILRKNGLHTVCEEASCPNIGECWSRG-----TATFMILGDICTRRCRFCDVKTGR 93 (306)
T ss_pred chhccCcHhheecCCCCchHHHHHHHHHhcCCceecccCCCCChHHHhcCC-----ceEEeeccchhccCCCccccCCCC
Confidence 456799999999999999999999999999999999999999999999988 999999999999999999999998
Q ss_pred CCCCCCcchHHHHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCCCcEEEeecCCCCCChHHHHHHHHcC
Q 017200 153 APPPPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSG 232 (375)
Q Consensus 153 ~~~~ld~eEi~~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aG 232 (375)
|.++|++||.++|++++.+|++|||||||+||||+|||+.||+++|++|++.+|++.||+|+|||.|+.+.|+.+.++|
T Consensus 94 -P~~lD~~EP~rvAeaV~~mgLkyVViTsVdRDDL~DGGA~hfa~~i~~Ire~~P~t~iEvL~PDF~G~~~al~~v~~~~ 172 (306)
T COG0320 94 -PNPLDPDEPERVAEAVKDMGLKYVVITSVDRDDLPDGGAQHFAECIRAIRELNPQTTIEVLTPDFRGNDDALEIVADAG 172 (306)
T ss_pred -CCCCCCchHHHHHHHHHHhCCCeEEEEeeccccccccchHHHHHHHHHHHhhCCCceEEEeCccccCCHHHHHHHHhcC
Confidence 8899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccccchHHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcCCcEEeeecC
Q 017200 233 LNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQY 312 (375)
Q Consensus 233 ldv~~hnlEtv~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~tkt~imvGlGET~ee~~etl~~Lrelgvd~v~i~qY 312 (375)
+|+|+||+|||+++|++|| ++++|+++|++|+.+|+..|. +.|||+||||||||++|++++|++||+.|||+++||||
T Consensus 173 pdV~nHNvETVprL~~~VR-p~A~Y~~SL~~L~~~k~~~P~-i~TKSgiMlGLGEt~~Ev~e~m~DLr~~gvdilTiGQY 250 (306)
T COG0320 173 PDVFNHNVETVPRLYPRVR-PGATYERSLSLLERAKELGPD-IPTKSGLMVGLGETDEEVIEVMDDLRSAGVDILTIGQY 250 (306)
T ss_pred cchhhcccccchhcccccC-CCCcHHHHHHHHHHHHHhCCC-cccccceeeecCCcHHHHHHHHHHHHHcCCCEEEeccc
Confidence 9999999999999999999 799999999999999999998 99999999999999999999999999999999999999
Q ss_pred CCCCCCCCCccccCCHHHHHHHHHHHHHhhhhhhccchhhhhhcchhHHHHHHHH
Q 017200 313 MRPSKRHMPVSEYITPEAFERYRALGMEMGFRYVASGPMVRSSYKVVGWCYYLIF 367 (375)
Q Consensus 313 l~P~~~~~~v~~~v~pe~~~~l~~~a~~~gf~~~~sgp~vrssy~a~~~~~~~~~ 367 (375)
|||+.+|+||.+||+|++|++|+++|.+|||.+|+|||||||||||||.|..+..
T Consensus 251 lqPS~~HlpV~ryv~PeeF~~~~~~a~~~GF~~v~sgPlvRSSYhA~~~~~~~~~ 305 (306)
T COG0320 251 LQPSRKHLPVQRYVTPEEFDELEEVAEEMGFLHVASGPLVRSSYHADEQFAEAEV 305 (306)
T ss_pred cCCccccCCceeccCHHHHHHHHHHHHHccchhhccCcccccccchHHHHHHhhh
Confidence 9999999999999999999999999999999999999999999999999988764
No 3
>PTZ00413 lipoate synthase; Provisional
Probab=100.00 E-value=1.2e-91 Score=691.01 Aligned_cols=337 Identities=50% Similarity=0.866 Sum_probs=310.3
Q ss_pred cchHHHHHHhhhC---CCCccccccCCCCCCcccc--ccCCCCCCCCCcceeecCCCCc----cHHHHHHHHhccChhhh
Q 017200 37 QTLAGLRARLASE---SPALSDFIDLQSNSSYSVE--VGTKKKPLPKPKWMKESIPGGD----KYVQIKKKLRELKLHTV 107 (375)
Q Consensus 37 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~p~wl~~~~p~~~----~~~~~~~~l~~~~L~tv 107 (375)
..+..|+++++++ +|+|.+|+.......++.. ..-++...++|+|||+++|.|+ +|.+++++|++++||||
T Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~f~~l~~~~~~~~~~~~~~~~~~~~kP~Wlk~~~~~~~~~~~~~~~~~~~~~~~~L~TV 126 (398)
T PTZ00413 47 IFLERFRERLNSDKTGKNSLEGFVDLPEGLKPSAASIGPIKRGEEPLPPWFKVKVPKGASRRPRFNRIRRSMREKKLHTV 126 (398)
T ss_pred HHHHHHHHhhhcccccCCchhhhhcCccccccccccCCCccCCCCCCCcceeecCCCCccccchHHHHHHHHHhCCCcee
Confidence 3478899999733 3799999976544333221 1334456799999999999998 99999999999999999
Q ss_pred hhhcCCCCcccccCCC-CCCccEEEEeeeCCccCCCCcCCCCCCCCCCCCCCcchHHHHHHHHHhcCCcEEEEEeeeCCC
Q 017200 108 CEEAKCPNLGECWSGG-ETGTATATIMILGDTCTRGCRFCNVKTSRAPPPPDPDEPTNVAEAIASWGLDYVVITSVDRDD 186 (375)
Q Consensus 108 ceeA~cpn~~ec~~~~-~~~~~tatfm~i~d~C~~~C~FC~v~~~r~~~~ld~eEi~~~a~al~~~G~~eIvLTsgdr~d 186 (375)
||||+||||+|||++| ++|++|||||+|||.|+++|+||++++...|..+|++||.+.|+++.++|++|+|||||+|||
T Consensus 127 Ceea~CPNi~EC~~~~~~~~~~tATfmilG~~CTr~C~FCaqstg~~p~~lD~eEp~~vA~av~~~Gl~~~VVTSv~RDD 206 (398)
T PTZ00413 127 CEEAKCPNIGECWGGGDEEGTATATIMVMGDHCTRGCRFCSVKTSRKPPPLDPNEPEKVAKAVAEMGVDYIVMTMVDRDD 206 (398)
T ss_pred eCCCCCCChHHHhCCCCCCCCceeEeeecCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCCEEEEEEEcCCC
Confidence 9999999999999975 678999999999999999999999998664567999999999999999999999999999999
Q ss_pred CCcccHHHHHHHHHHHHHhCCCcEEEeecCCCCCChHHHHHHHHcCcccccccccchHHHHHHhcCCCCCHHHHHHHHHH
Q 017200 187 LADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMM 266 (375)
Q Consensus 187 l~d~G~~~~~~lir~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGldv~~hnlEtv~rl~~~mr~r~~s~~~~l~vl~~ 266 (375)
++|+|++||+++|+.|++..|++.|++++|||.|+.+.++.|+++|+|+|+||+||++++|+.||+++++|+++|++|+.
T Consensus 207 L~D~ga~~~a~~I~~Ir~~~p~~~IevligDf~g~~e~l~~L~eAG~dvynHNLETv~rLyp~VRt~~atYe~sLe~Lr~ 286 (398)
T PTZ00413 207 LPDGGASHVARCVELIKESNPELLLEALVGDFHGDLKSVEKLANSPLSVYAHNIECVERITPYVRDRRASYRQSLKVLEH 286 (398)
T ss_pred CChhhHHHHHHHHHHHHccCCCCeEEEcCCccccCHHHHHHHHhcCCCEEecccccCHhHHHHHccCcCCHHHHHHHHHH
Confidence 99999999999999999988999999999999999999999999999999999999999999999657999999999999
Q ss_pred HHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcCCcEEeeecCCCCCCCCCCccccCCHHHHHHHHHHHHHhhhhhh
Q 017200 267 AKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQYMRPSKRHMPVSEYITPEAFERYRALGMEMGFRYV 346 (375)
Q Consensus 267 ak~~~p~Gl~tkt~imvGlGET~ee~~etl~~Lrelgvd~v~i~qYl~P~~~~~~v~~~v~pe~~~~l~~~a~~~gf~~~ 346 (375)
+++.++.|+.|||++|||||||++|++++|++|+++|+|+++|||||||+++|+||.+||+|++|++|+++|.+|||.+|
T Consensus 287 AKe~f~~gi~tcSGiIVGLGET~eEvie~m~dLrelGVDivtIGQYL~Ps~~h~~V~~yv~P~~F~~~~~~a~~~Gf~~v 366 (398)
T PTZ00413 287 VKEFTNGAMLTKSSIMLGLGETEEEVRQTLRDLRTAGVSAVTLGQYLQPTKTRLKVSRYAHPKEFEMWEEEAMKMGFLYC 366 (398)
T ss_pred HHHHhcCCceEeeeeEecCCCCHHHHHHHHHHHHHcCCcEEeeccccCCCcccCCceeccCHHHHHHHHHHHHHcCCceE
Confidence 99975457999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchhhhhhcchhHHHHHHHHhhhhcc
Q 017200 347 ASGPMVRSSYKVVGWCYYLIFNYRSTN 373 (375)
Q Consensus 347 ~sgp~vrssy~a~~~~~~~~~~~~~~~ 373 (375)
+|||||||||||+|+|+++++++|++.
T Consensus 367 ~sgPlVRSSY~A~e~~~~~~~~~r~~~ 393 (398)
T PTZ00413 367 ASGPLVRSSYRAGEYYIKNLVKQRRKA 393 (398)
T ss_pred EecCccccchhccHHHHHHHHHhhhhh
Confidence 999999999999999999999999863
No 4
>PLN02428 lipoic acid synthase
Probab=100.00 E-value=6.8e-88 Score=665.46 Aligned_cols=335 Identities=71% Similarity=1.157 Sum_probs=314.3
Q ss_pred CcchHHHHHHhhhCCCCccccccCCCCCCccccccCCCCCCCCCcceeecCCCCccHHHHHHHHhccChhhhhhhcCCCC
Q 017200 36 PQTLAGLRARLASESPALSDFIDLQSNSSYSVEVGTKKKPLPKPKWMKESIPGGDKYVQIKKKLRELKLHTVCEEAKCPN 115 (375)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~wl~~~~p~~~~~~~~~~~l~~~~L~tvceeA~cpn 115 (375)
.+.++.|+.+++..||+|+||++.... ..+.+.+....++|+|||+++|.|++|.+++++|++++||||||||+|||
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~p~wl~~~~~~~~~~~~~~~~~~~~~l~tvc~~a~cpn 88 (349)
T PLN02428 12 PQTLAALRARLASESPSLGDFVSLGPY---TLGSYGRDKPLPKPKWLRQRAPGGEKYTEIKEKLRELKLNTVCEEAQCPN 88 (349)
T ss_pred cchhhHHHHhhccCCCchHhhhcCCcc---cccccccCCCCCCCcceeecCCCCchHHHHHHHHHHCCCceeecCCCCCC
Confidence 344888999999899999999985322 12233445567899999999999999999999999999999999999999
Q ss_pred cccccCCCCCCccEEEEeeeCCccCCCCcCCCCCCCCCCCCCCcchHHHHHHHHHhcCCcEEEEEeeeCCCCCcccHHHH
Q 017200 116 LGECWSGGETGTATATIMILGDTCTRGCRFCNVKTSRAPPPPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHF 195 (375)
Q Consensus 116 ~~ec~~~~~~~~~tatfm~i~d~C~~~C~FC~v~~~r~~~~ld~eEi~~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~ 195 (375)
++|||++|+++.+|+|||++||+|+++|+||++++.+++...+++||+++|+++.++|+++|+||||++||++|+|+++|
T Consensus 89 ~~ec~~~~~~~~~taT~milg~gCtr~CrFCav~~~~~p~~~d~~Ep~~vA~~v~~~Glk~vvltSg~rddl~D~ga~~~ 168 (349)
T PLN02428 89 IGECWNGGGTGTATATIMILGDTCTRGCRFCAVKTSRTPPPPDPDEPENVAEAIASWGVDYVVLTSVDRDDLPDGGSGHF 168 (349)
T ss_pred hHHhhCCCCCCCceEEEEEecCCCCCCCCCCcCCCCCCCCCCChhhHHHHHHHHHHcCCCEEEEEEcCCCCCCcccHHHH
Confidence 99999999899999999999999999999999998776667889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCcEEEeecCCCCCChHHHHHHHHcCcccccccccchHHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCc
Q 017200 196 AQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGT 275 (375)
Q Consensus 196 ~~lir~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGldv~~hnlEtv~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl 275 (375)
+++++.|++..|.++|++++|||.++.+.|+.|+++|+|+|+||+||++++|+.|++++++|++++++++.|++.+| |+
T Consensus 169 ~elir~Ir~~~P~i~Ie~L~pdf~~d~elL~~L~eAG~d~i~hnlETv~rL~~~Ir~~~~sye~~Le~L~~ak~~~p-Gi 247 (349)
T PLN02428 169 AETVRRLKQLKPEILVEALVPDFRGDLGAVETVATSGLDVFAHNIETVERLQRIVRDPRAGYKQSLDVLKHAKESKP-GL 247 (349)
T ss_pred HHHHHHHHHhCCCcEEEEeCccccCCHHHHHHHHHcCCCEEccCccCcHHHHHHhcCCCCCHHHHHHHHHHHHHhCC-CC
Confidence 99999999999999999999999999999999999999999999999999999999668999999999999999876 59
Q ss_pred eEEEeEEEecCCCHHHHHHHHHHHHHcCCcEEeeecCCCCCCCCCCccccCCHHHHHHHHHHHHHhhhhhhccchhhhhh
Q 017200 276 LTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQYMRPSKRHMPVSEYITPEAFERYRALGMEMGFRYVASGPMVRSS 355 (375)
Q Consensus 276 ~tkt~imvGlGET~ee~~etl~~Lrelgvd~v~i~qYl~P~~~~~~v~~~v~pe~~~~l~~~a~~~gf~~~~sgp~vrss 355 (375)
.++++||+|||||+||+++++++|+++++|+++||||+||++.|++|.+||+|++|++|+++|.++||.+|+||||||||
T Consensus 248 ~tkSg~MvGLGET~Edv~e~l~~Lrelgvd~vtigqyL~Ps~~h~~v~~~v~p~~f~~~~~~~~~~gf~~v~sgp~vrss 327 (349)
T PLN02428 248 LTKTSIMLGLGETDEEVVQTMEDLRAAGVDVVTFGQYLRPTKRHLPVKEYVTPEKFEFWREYGEEMGFRYVASGPLVRSS 327 (349)
T ss_pred eEEEeEEEecCCCHHHHHHHHHHHHHcCCCEEeeccccCCCcceeeeecccCHHHHHHHHHHHHHcCCceEEecCcccch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhHHHHHHHHhhhhccC
Q 017200 356 YKVVGWCYYLIFNYRSTNA 374 (375)
Q Consensus 356 y~a~~~~~~~~~~~~~~~~ 374 (375)
|||+|.|+++++++|+++.
T Consensus 328 y~a~~~~~~~~~~~~~~~~ 346 (349)
T PLN02428 328 YKAGEFFIKSMIREDRAKA 346 (349)
T ss_pred hhhHHHHHHHHHHhhcccc
Confidence 9999999999999998753
No 5
>TIGR00510 lipA lipoate synthase. The family shows strong sequence conservation.
Probab=100.00 E-value=1.5e-83 Score=626.45 Aligned_cols=294 Identities=49% Similarity=0.856 Sum_probs=283.2
Q ss_pred cCCCCCCCCCcceeecCCCCccHHHHHHHHhccChhhhhhhcCCCCcccccCCCCCCccEEEEeeeCCccCCCCcCCCCC
Q 017200 70 GTKKKPLPKPKWMKESIPGGDKYVQIKKKLRELKLHTVCEEAKCPNLGECWSGGETGTATATIMILGDTCTRGCRFCNVK 149 (375)
Q Consensus 70 ~~~~~~~~~p~wl~~~~p~~~~~~~~~~~l~~~~L~tvceeA~cpn~~ec~~~~~~~~~tatfm~i~d~C~~~C~FC~v~ 149 (375)
.++....++|+|||+++|.|++|.+++++|++++||||||||+|||++|||+++ |+|||++||+|+++|+||+++
T Consensus 9 ~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~~l~tvc~~a~cpn~~ec~~~~-----tatfm~i~~gC~~~C~FC~v~ 83 (302)
T TIGR00510 9 PNKEILLRKPEWLKIKLPLGTVIAQIKNTMKNKGLHTVCEEASCPNLTECWNHG-----TATFMILGDICTRRCPFCDVA 83 (302)
T ss_pred cccCccCCCCcceEecCCCCchHHHHHHHHHHCCCceeecCCCCCCcccccCCC-----EEEEEecCcCcCCCCCcCCcc
Confidence 455667889999999999999999999999999999999999999999999988 999999999999999999999
Q ss_pred CCCCCCCCCcchHHHHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCCCcEEEeecCCCCCChHHHHHHH
Q 017200 150 TSRAPPPPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVA 229 (375)
Q Consensus 150 ~~r~~~~ld~eEi~~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~ 229 (375)
+.+++...+++||+++|++++++|++||+||||+++|++|+|..+|+++|++|++..|++.|++++||+.++.+.++.|+
T Consensus 84 ~~rg~~~~~~eei~~~a~~~~~~GlkevvLTsv~~ddl~d~g~~~l~~li~~I~~~~p~i~Ievl~~d~~g~~e~l~~l~ 163 (302)
T TIGR00510 84 HGRNPLPPDPEEPAKLAETIKDMGLKYVVITSVDRDDLEDGGASHLAECIEAIREKLPNIKIETLVPDFRGNIAALDILL 163 (302)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEeecCCCcccccHHHHHHHHHHHHhcCCCCEEEEeCCcccCCHHHHHHHH
Confidence 88766667899999999999999999999999999999998899999999999998899999999999988899999999
Q ss_pred HcCcccccccccchHHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcCCcEEee
Q 017200 230 KSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTF 309 (375)
Q Consensus 230 ~aGldv~~hnlEtv~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~tkt~imvGlGET~ee~~etl~~Lrelgvd~v~i 309 (375)
++|+|+++||+||++++|++|| ++++|++++++++.+++..|+ +.++|+||||||||+||++++|++|+++|++.+++
T Consensus 164 ~aG~dv~~hnlEt~~~l~~~vr-r~~t~e~~Le~l~~ak~~~pg-i~~~TgiIVGlGETeee~~etl~~Lrelg~d~v~i 241 (302)
T TIGR00510 164 DAPPDVYNHNLETVERLTPFVR-PGATYRWSLKLLERAKEYLPN-LPTKSGIMVGLGETNEEIKQTLKDLRDHGVTMVTL 241 (302)
T ss_pred HcCchhhcccccchHHHHHHhC-CCCCHHHHHHHHHHHHHhCCC-CeecceEEEECCCCHHHHHHHHHHHHhcCCCEEEe
Confidence 9999999999999999999999 799999999999999998875 99999999999999999999999999999999999
Q ss_pred ecCCCCCCCCCCccccCCHHHHHHHHHHHHHhhhhhhccchhhhhhcchhHHHHHHHHhhh
Q 017200 310 GQYMRPSKRHMPVSEYITPEAFERYRALGMEMGFRYVASGPMVRSSYKVVGWCYYLIFNYR 370 (375)
Q Consensus 310 ~qYl~P~~~~~~v~~~v~pe~~~~l~~~a~~~gf~~~~sgp~vrssy~a~~~~~~~~~~~~ 370 (375)
|||+||+++|+||.+|++|++|+.|+++|.+|||.+|+|||||||||||+|.|+++++++|
T Consensus 242 gqYl~p~~~~~~v~~~~~p~~f~~~~~~a~~~gf~~v~~~p~vrssy~a~~~~~~~~~~~~ 302 (302)
T TIGR00510 242 GQYLRPSRRHLPVKRYVSPEEFDYYRSVALEMGFLHAACGPFVRSSYHADSLFAAGRLVKT 302 (302)
T ss_pred ecccCCCCCCCccccCCCHHHHHHHHHHHHHcCChheEecccchhhhhHHHHHHHHHhccC
Confidence 9999999999999999999999999999999999999999999999999999999999875
No 6
>PRK12928 lipoyl synthase; Provisional
Probab=100.00 E-value=1.1e-75 Score=569.01 Aligned_cols=281 Identities=47% Similarity=0.824 Sum_probs=269.9
Q ss_pred CCCCCCCcceeecCCCCccHHHHHHHHhccChhhhhhhcCCCCcccccCCCCCCccEEEEeeeCCccCCCCcCCCCCCCC
Q 017200 73 KKPLPKPKWMKESIPGGDKYVQIKKKLRELKLHTVCEEAKCPNLGECWSGGETGTATATIMILGDTCTRGCRFCNVKTSR 152 (375)
Q Consensus 73 ~~~~~~p~wl~~~~p~~~~~~~~~~~l~~~~L~tvceeA~cpn~~ec~~~~~~~~~tatfm~i~d~C~~~C~FC~v~~~r 152 (375)
....++|+|||+++|.|++|.+++.++++++|||||++|+|||+++||+++ ++|||++||+|+++|+||++++++
T Consensus 9 ~~~~~~p~w~~~~~~~~~~~~~~~~l~~~~~l~tv~~~A~~~~~~~~~~~~-----~~tfv~is~gC~~~C~FCa~~~g~ 83 (290)
T PRK12928 9 IPVERLPEWLRAPIGKASELETVQRLVKQRRLHTICEEARCPNRGECYAQG-----TATFLIMGSICTRRCAFCQVDKGR 83 (290)
T ss_pred CCCCCCCcceeecCCCChhHHHHHHHHHcCCHHHHHHHhCCCcccccCCCC-----EEEEEEecccccCcCCCCCccCCC
Confidence 456799999999999999999999999999999999999999999999887 999999999999999999999865
Q ss_pred CCCCCCcchHHHHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCCCcEEEeecCCCCC-ChHHHHHHHHc
Q 017200 153 APPPPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRG-NNGCVREVAKS 231 (375)
Q Consensus 153 ~~~~ld~eEi~~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p~i~Ie~l~pd~~g-~~e~l~~L~~a 231 (375)
+.+++++||+++|++++++|++||+||||+++|++|+|..+|.++++.|++..|.++|++++|++.+ ..+.|..|+++
T Consensus 84 -~~~~~~eei~~~a~~~~~~G~keivitg~~~dDl~d~g~~~~~ell~~Ik~~~p~~~I~~ltp~~~~~~~e~L~~l~~A 162 (290)
T PRK12928 84 -PMPLDPDEPERVAEAVAALGLRYVVLTSVARDDLPDGGAAHFVATIAAIRARNPGTGIEVLTPDFWGGQRERLATVLAA 162 (290)
T ss_pred -CCCCCHHHHHHHHHHHHHCCCCEEEEEEEeCCcccccCHHHHHHHHHHHHhcCCCCEEEEeccccccCCHHHHHHHHHc
Confidence 5679999999999999999999999999999999998899999999999999999999999999987 78899999999
Q ss_pred CcccccccccchHHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcCCcEEeeec
Q 017200 232 GLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQ 311 (375)
Q Consensus 232 Gldv~~hnlEtv~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~tkt~imvGlGET~ee~~etl~~Lrelgvd~v~i~q 311 (375)
|+++++||+||++++++.|+ +++++++|+++++.|++..|. +.++|+||+|||||+||++++|++|+++++|.+++||
T Consensus 163 g~~i~~hnlEt~~~vl~~m~-r~~t~e~~le~l~~ak~~gp~-i~~~s~iIvG~GET~ed~~etl~~Lrel~~d~v~i~~ 240 (290)
T PRK12928 163 KPDVFNHNLETVPRLQKAVR-RGADYQRSLDLLARAKELAPD-IPTKSGLMLGLGETEDEVIETLRDLRAVGCDRLTIGQ 240 (290)
T ss_pred CchhhcccCcCcHHHHHHhC-CCCCHHHHHHHHHHHHHhCCC-ceecccEEEeCCCCHHHHHHHHHHHHhcCCCEEEEEc
Confidence 99999999999999999999 789999999999999998765 9999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCccccCCHHHHHHHHHHHHHhhhhhhccchhhhhhcchhHH
Q 017200 312 YMRPSKRHMPVSEYITPEAFERYRALGMEMGFRYVASGPMVRSSYKVVGW 361 (375)
Q Consensus 312 Yl~P~~~~~~v~~~v~pe~~~~l~~~a~~~gf~~~~sgp~vrssy~a~~~ 361 (375)
|+||+.+|+||.+||+|++|+.|+++|.++||.+|+|||||||||||+|.
T Consensus 241 Yl~p~~~~~~v~~~~~~~~f~~~~~~~~~~g~~~~~~~p~~rssy~a~~~ 290 (290)
T PRK12928 241 YLRPSLAHLPVQRYWTPEEFEALGQIARELGFSHVRSGPLVRSSYHAGEQ 290 (290)
T ss_pred CCCCCccCCceeeccCHHHHHHHHHHHHHcCCceeEecCcccccccCCCC
Confidence 99999999999999999999999999999999999999999999999973
No 7
>PRK05481 lipoyl synthase; Provisional
Probab=100.00 E-value=3.1e-64 Score=488.90 Aligned_cols=282 Identities=54% Similarity=0.962 Sum_probs=266.9
Q ss_pred CCCCCcceeecCCCCccHHHHHHHHhccChhhhhhhcCCCCcccccCCCCCCccEEEEeeeCCccCCCCcCCCCCCCCCC
Q 017200 75 PLPKPKWMKESIPGGDKYVQIKKKLRELKLHTVCEEAKCPNLGECWSGGETGTATATIMILGDTCTRGCRFCNVKTSRAP 154 (375)
Q Consensus 75 ~~~~p~wl~~~~p~~~~~~~~~~~l~~~~L~tvceeA~cpn~~ec~~~~~~~~~tatfm~i~d~C~~~C~FC~v~~~r~~ 154 (375)
..++|+|||+++|.+++|+++..++++.+|+|||++|+|||+.+||+++ ++|||+++|+|+++|+||+++..+ +
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~a~~~~~~~~~~~~-----~~~fi~is~GC~~~C~FC~i~~~r-~ 77 (289)
T PRK05481 4 VARKPDWLRVKLPTGEEYTEIKKLLRELGLHTVCEEASCPNIGECWSRG-----TATFMILGDICTRRCPFCDVATGR-P 77 (289)
T ss_pred CCCCCcceeecCCCChhHHHHHHHHHhCChHHHHHhhCCCcchhccCCC-----eEEEEEecccccCCCCCceeCCCC-C
Confidence 4579999999999999999999999999999999999999999999877 999999999999999999999877 4
Q ss_pred CCCCcchHHHHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCCCcEEEeecCCCCCChHHHHHHHHcCcc
Q 017200 155 PPPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLN 234 (375)
Q Consensus 155 ~~ld~eEi~~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGld 234 (375)
.+++++||+++++.+++.|+++|+||||+++|+++.|..+|+++++.|++..|+++|++++|++....+.+..++++|++
T Consensus 78 ~s~~~eeI~~ea~~l~~~G~kEI~L~gg~~~d~~~~~~~~l~~Ll~~I~~~~p~irI~~l~~~~~~~~e~L~~l~~ag~~ 157 (289)
T PRK05481 78 LPLDPDEPERVAEAVARMGLKYVVITSVDRDDLPDGGAQHFAETIRAIRELNPGTTIEVLIPDFRGRMDALLTVLDARPD 157 (289)
T ss_pred CCCCHHHHHHHHHHHHHCCCCEEEEEEeeCCCcccccHHHHHHHHHHHHhhCCCcEEEEEccCCCCCHHHHHHHHhcCcc
Confidence 56999999999999999999999999999888876667899999999999889999999999887778999999999999
Q ss_pred cccccccchHHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcCCcEEeeecCCC
Q 017200 235 VFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQYMR 314 (375)
Q Consensus 235 v~~hnlEtv~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~tkt~imvGlGET~ee~~etl~~Lrelgvd~v~i~qYl~ 314 (375)
+++|++|++++++++|+ |++++++|+++++.+++.+|+ +.++|+||+|||||+||+.++|++|+++++|.+++|+|++
T Consensus 158 i~~~~~ets~~vlk~m~-r~~t~e~~le~i~~ar~~~pg-i~~~t~~IvGfGET~ed~~~tl~~lrel~~d~v~if~Ys~ 235 (289)
T PRK05481 158 VFNHNLETVPRLYKRVR-PGADYERSLELLKRAKELHPG-IPTKSGLMVGLGETDEEVLEVMDDLRAAGVDILTIGQYLQ 235 (289)
T ss_pred eeeccccChHHHHHHhC-CCCCHHHHHHHHHHHHHhCCC-CeEeeeeEEECCCCHHHHHHHHHHHHhcCCCEEEEEccCC
Confidence 99999999999999999 799999999999999998875 9999999999999999999999999999999999999999
Q ss_pred CCCCCCCccccCCHHHHHHHHHHHHHhhhhhhccchhhhhhcchhHHHHH
Q 017200 315 PSKRHMPVSEYITPEAFERYRALGMEMGFRYVASGPMVRSSYKVVGWCYY 364 (375)
Q Consensus 315 P~~~~~~v~~~v~pe~~~~l~~~a~~~gf~~~~sgp~vrssy~a~~~~~~ 364 (375)
|..++++|.++++++++++|.+++.++||.+|+|||+|||||+|+++|..
T Consensus 236 pa~k~~~v~~~~k~~r~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 285 (289)
T PRK05481 236 PSRKHLPVERYVTPEEFDEYKEIALELGFLHVASGPLVRSSYHADEQAAG 285 (289)
T ss_pred CccccCCCCCcCCHHHHHHHHHHHHHcCchheEecCccccchhhHHHHhh
Confidence 97768899999999999999999999999999999999999999997543
No 8
>PRK08444 hypothetical protein; Provisional
Probab=99.97 E-value=3.9e-31 Score=263.47 Aligned_cols=240 Identities=15% Similarity=0.251 Sum_probs=194.6
Q ss_pred ccHHHHHHHHhccChhhhhhhcCCCCcccccCCCCCCccEEEEe-----eeCCccCCCCcCCCCCCCCC-C--CCCCcch
Q 017200 90 DKYVQIKKKLRELKLHTVCEEAKCPNLGECWSGGETGTATATIM-----ILGDTCTRGCRFCNVKTSRA-P--PPPDPDE 161 (375)
Q Consensus 90 ~~~~~~~~~l~~~~L~tvceeA~cpn~~ec~~~~~~~~~tatfm-----~i~d~C~~~C~FC~v~~~r~-~--~~ld~eE 161 (375)
-+.++...++. .+|..+++.|+-.+... + |+ +++|. .++|.|..+|.||+|+...+ + ..+++||
T Consensus 13 ls~eeal~Ll~-~dl~~L~~~A~~vR~~~-~-G~-----~Vt~~~n~~In~TN~C~~~C~FCaf~~~~~~~~~y~ls~ee 84 (353)
T PRK08444 13 LNQEEAVKLYD-LDLFTLGKYADKKRTKL-H-GK-----KVYFNVNRHINPTNICADVCKFCAFSAHRKNPNPYTMSHEE 84 (353)
T ss_pred CCHHHHHHHhh-cCHHHHHHHHHHHHHHh-c-CC-----EEEEEecCCcccccccccCCccCCCccCCCCCccccCCHHH
Confidence 34677777774 48999999998777653 2 43 66665 46999999999999987432 2 2389999
Q ss_pred HHHHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCCCcEEEeecCCC---------CCChHHHHHHHHcC
Q 017200 162 PTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDF---------RGNNGCVREVAKSG 232 (375)
Q Consensus 162 i~~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p~i~Ie~l~pd~---------~g~~e~l~~L~~aG 232 (375)
+++.|+++++.|+++++|+||.+++++ .++|.++++.||+.+|++.|++++|.- ....|.+..|+++|
T Consensus 85 I~~~a~~a~~~G~~ei~iv~G~~p~~~---~e~y~e~ir~Ik~~~p~i~i~a~s~~Ei~~~a~~~g~~~~e~l~~LkeAG 161 (353)
T PRK08444 85 ILEIVKNSVKRGIKEVHIVSAHNPNYG---YEWYLEIFKKIKEAYPNLHVKAMTAAEVDFLSRKFGKSYEEVLEDMLEYG 161 (353)
T ss_pred HHHHHHHHHHCCCCEEEEeccCCCCCC---HHHHHHHHHHHHHHCCCceEeeCCHHHHHHHHHHcCCCHHHHHHHHHHhC
Confidence 999999999999999999999888764 789999999999999999999977631 11479999999999
Q ss_pred ccccccc-ccc-hHHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcCCcEEeee
Q 017200 233 LNVFAHN-IET-VEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFG 310 (375)
Q Consensus 233 ldv~~hn-lEt-v~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~tkt~imvGlGET~ee~~etl~~Lrelgvd~v~i~ 310 (375)
+|.++|+ .|+ ++++++.|+|.+.+.++|+++++.||+ .|+.++|+||+|+|||.||++++|..||++|++.++|.
T Consensus 162 l~~~~g~~aEi~~~~vr~~I~p~k~~~~~~~~i~~~a~~---~Gi~~~sg~l~G~gEt~edrv~hl~~Lr~Lq~~t~gf~ 238 (353)
T PRK08444 162 VDSMPGGGAEIFDEEVRKKICKGKVSSERWLEIHKYWHK---KGKMSNATMLFGHIENREHRIDHMLRLRDLQDKTGGFN 238 (353)
T ss_pred cccCCCCCchhcCHHHHhhhCCCCCCHHHHHHHHHHHHH---cCCCccceeEEecCCCHHHHHHHHHHHHHhccccCCce
Confidence 9999995 897 579999999767777999999999999 68999999999999999999999999999999877774
Q ss_pred cCCCCC---CCCCCccccCCHHHHHHHHHHHHHhhhh
Q 017200 311 QYMRPS---KRHMPVSEYITPEAFERYRALGMEMGFR 344 (375)
Q Consensus 311 qYl~P~---~~~~~v~~~v~pe~~~~l~~~a~~~gf~ 344 (375)
.|. |. +.++|+.....+...+.|+.+|..+=++
T Consensus 239 ~fI-p~~f~~~~t~l~~~~~~~~~e~Lr~iAi~Rl~L 274 (353)
T PRK08444 239 AFI-PLVYQRENNYLKVEKFPSSQEILKTIAISRILL 274 (353)
T ss_pred EEE-ecccCCCCCcCCCCCCCCHHHHHHHHHHHHHhc
Confidence 332 31 1345555443455678888888875443
No 9
>PRK05927 hypothetical protein; Provisional
Probab=99.97 E-value=2.5e-30 Score=257.49 Aligned_cols=246 Identities=14% Similarity=0.202 Sum_probs=193.6
Q ss_pred CCCCccHHHHHHHHhccChhhhhhhcCCCCcccccCCCCCCccEEEEee-----eCCccCCCCcCCCCCCCC-CCC--CC
Q 017200 86 IPGGDKYVQIKKKLRELKLHTVCEEAKCPNLGECWSGGETGTATATIMI-----LGDTCTRGCRFCNVKTSR-APP--PP 157 (375)
Q Consensus 86 ~p~~~~~~~~~~~l~~~~L~tvceeA~cpn~~ec~~~~~~~~~tatfm~-----i~d~C~~~C~FC~v~~~r-~~~--~l 157 (375)
+|..-..+++..++...+|..+++.|+-.+.. .++|. .++|++ ++|.|+.+|.||+++... .+. .+
T Consensus 3 ~~~~is~ee~l~L~~~~~l~~L~~~A~~iR~~-~~~G~-----~V~~i~n~~i~~Tn~C~~~C~fCaf~~~~~~~~~y~l 76 (350)
T PRK05927 3 LPARISFQEGLELFLYSPLEELQEHADSLRKQ-RYPQN-----TVTYVLDANPNYTNICKIDCTFCAFYRKPHSSDAYLL 76 (350)
T ss_pred CccCCCHHHHHHHhcCCCHHHHHHHHHHHHHH-HcCCC-----eEEEEcccCCccchhhhcCCccCCccCCCCCcccccc
Confidence 45566788888899888999999999876654 34343 677763 499999999999998742 222 38
Q ss_pred CcchHHHHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCCCcEEEeecCCC-------CC--ChHHHHHH
Q 017200 158 DPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDF-------RG--NNGCVREV 228 (375)
Q Consensus 158 d~eEi~~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p~i~Ie~l~pd~-------~g--~~e~l~~L 228 (375)
+++|+++.++++.+.|+++++||||.+++++ .++++++++.||+.+|++.+.+++|.- .| ..|.++.|
T Consensus 77 s~eei~~~a~~~~~~G~~~i~i~gG~~p~~~---~e~~~~~i~~ik~~~p~l~~~~~s~~ei~~~~~~~G~~~~e~l~~L 153 (350)
T PRK05927 77 SFDEFRSLMQRYVSAGVKTVLLQGGVHPQLG---IDYLEELVRITVKEFPSLHPHFFSAVEIAHAAQVSGISTEQALERL 153 (350)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEeCCCCCCCC---HHHHHHHHHHHHHHCCCCcccCCCHHHHHHHHHhcCCCHHHHHHHH
Confidence 9999999999999999999999999987754 899999999999999999887776621 12 58999999
Q ss_pred HHcCcccccc-cccchH-HHHHHhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcCCcE
Q 017200 229 AKSGLNVFAH-NIETVE-ELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDV 306 (375)
Q Consensus 229 ~~aGldv~~h-nlEtv~-rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~tkt~imvGlGET~ee~~etl~~Lrelgvd~ 306 (375)
+++|++.++| |+|+.+ ++++.++|.+.++++|+++++.||+ .|+.++|+||+|+|||.+|++++|..||+++.++
T Consensus 154 k~aGl~~l~g~~~Et~~~~~~~~~~p~k~~~~~rl~~i~~A~~---lGi~~~sg~l~G~gEt~e~ri~~l~~Lr~lqd~~ 230 (350)
T PRK05927 154 WDAGQRTIPGGGAEILSERVRKIISPKKMGPDGWIQFHKLAHR---LGFRSTATMMFGHVESPEDILLHLQTLRDAQDEN 230 (350)
T ss_pred HHcCcccCCCCCchhCCHHHhhccCCCCCCHHHHHHHHHHHHH---cCCCcCceeEEeeCCCHHHHHHHHHHHHHhhHhh
Confidence 9999999999 899876 7777777656678999999999999 5899999999999999999999999999999654
Q ss_pred EeeecCC--CCCCCCCCccccC--CHHHHHHHHHHHHHhhh
Q 017200 307 MTFGQYM--RPSKRHMPVSEYI--TPEAFERYRALGMEMGF 343 (375)
Q Consensus 307 v~i~qYl--~P~~~~~~v~~~v--~pe~~~~l~~~a~~~gf 343 (375)
-+|..|+ .+.+..+|+.... .+...+.|+.+|..+=+
T Consensus 231 ~gf~~fIp~~~~~~~tpl~~~~~~~~s~~e~Lr~iAv~Rl~ 271 (350)
T PRK05927 231 PGFYSFIPWSYKPGNTALGRRVPHQASPELYYRILAVARIF 271 (350)
T ss_pred CCeeeeeecCcCCCCCccccCCCCCCCHHHHHHHHHHHHHh
Confidence 4443332 1112345543221 24456778888777543
No 10
>COG0621 MiaB 2-methylthioadenine synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.97 E-value=1.1e-29 Score=257.55 Aligned_cols=212 Identities=18% Similarity=0.350 Sum_probs=176.1
Q ss_pred EEEEeeeCCccCCCCcCCCCCCCCCCC-CCCcchHHHHHHHHHhcCCcEEEEEeeeCCCC-Cccc--HHHHHHHHHHHHH
Q 017200 129 TATIMILGDTCTRGCRFCNVKTSRAPP-PPDPDEPTNVAEAIASWGLDYVVITSVDRDDL-ADQG--SGHFAQTVRKLKE 204 (375)
Q Consensus 129 tatfm~i~d~C~~~C~FC~v~~~r~~~-~ld~eEi~~~a~al~~~G~~eIvLTsgdr~dl-~d~G--~~~~~~lir~Ik~ 204 (375)
+.+|+.+++||+++|+||++|..|+.. +.++++|+++++.+++.|++||+|||+|-..| .|.| ...|+++++.|.+
T Consensus 144 ~~A~v~I~eGCn~~CtfCiiP~~RG~~rSr~~e~Il~ev~~Lv~~G~kEI~L~gqdv~aYG~D~~~~~~~l~~Ll~~l~~ 223 (437)
T COG0621 144 VRAFVKIQEGCNKFCTFCIIPYARGKERSRPPEDILKEVKRLVAQGVKEIVLTGQDVNAYGKDLGGGKPNLADLLRELSK 223 (437)
T ss_pred eEEEEEhhcCcCCCCCeeeeeccCCCccCCCHHHHHHHHHHHHHCCCeEEEEEEEehhhccccCCCCccCHHHHHHHHhc
Confidence 899999999999999999999988754 69999999999999999999999999985544 2322 4569999999988
Q ss_pred hCCC---cEEEeecCCCCCChHHHHHHHHcCccccccc---c-cchHHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCceE
Q 017200 205 LKPN---MLIEALVPDFRGNNGCVREVAKSGLNVFAHN---I-ETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLT 277 (375)
Q Consensus 205 ~~p~---i~Ie~l~pd~~g~~e~l~~L~~aGldv~~hn---l-Etv~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~t 277 (375)
.|+ +++..+.|.-. +++.++.+.+ +..+++|- + ..++++++.|+ |+|+.++++++++.+|+..|+ +.+
T Consensus 224 -I~G~~riR~~~~~P~~~-~d~lI~~~~~-~~kv~~~lHlPvQsGsd~ILk~M~-R~yt~e~~~~~i~k~R~~~Pd-~~i 298 (437)
T COG0621 224 -IPGIERIRFGSSHPLEF-TDDLIEAIAE-TPKVCPHLHLPVQSGSDRILKRMK-RGYTVEEYLEIIEKLRAARPD-IAI 298 (437)
T ss_pred -CCCceEEEEecCCchhc-CHHHHHHHhc-CCcccccccCccccCCHHHHHHhC-CCcCHHHHHHHHHHHHHhCCC-ceE
Confidence 443 44445666322 5666666655 45788775 3 46889999999 999999999999999999998 999
Q ss_pred EEeEEEec-CCCHHHHHHHHHHHHHcCCcEEeeecCC-CCCCCC----CCccccCCHHHHHHHHHHHHHhhhhh
Q 017200 278 KTSIMLGC-GETPDQVVSTMEKVRAAGVDVMTFGQYM-RPSKRH----MPVSEYITPEAFERYRALGMEMGFRY 345 (375)
Q Consensus 278 kt~imvGl-GET~ee~~etl~~Lrelgvd~v~i~qYl-~P~~~~----~~v~~~v~pe~~~~l~~~a~~~gf~~ 345 (375)
.|+||||| |||+|||.+||++++++++|.+++|+|+ ||+++. -+|.+.|..++.++|++++.+....+
T Consensus 299 ~tDiIVGFPgETeedFe~tl~lv~e~~fd~~~~F~YSpRpGTpAa~~~~qvp~~vkkeR~~~L~~l~~~~~~~~ 372 (437)
T COG0621 299 STDIIVGFPGETEEDFEETLDLVEEVRFDRLHVFKYSPRPGTPAALMPDQVPEEVKKERLRRLQELQQQISAEF 372 (437)
T ss_pred eccEEEECCCCCHHHHHHHHHHHHHhCCCEEeeeecCCCCCCccccCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999 9999999999999999999999999997 665432 24666677889999999888876654
No 11
>TIGR03700 mena_SCO4494 putative menaquinone biosynthesis protein, SCO4494 family. Members of this protein family appear to be involved in menaquinone biosynthesis by an alternate pathway via futalosine, based on close phylogenetic correlation with known markers of the futalosine pathway, gene clustering in many organisms, and paralogy with the SCO4550 protein.
Probab=99.97 E-value=7.3e-30 Score=254.31 Aligned_cols=237 Identities=18% Similarity=0.289 Sum_probs=192.0
Q ss_pred ccHHHHHHHHhccChhhhhhhcCCCCcccccCCCCCCccEEEE-----eeeCCccCCCCcCCCCCCCCC-CC--CCCcch
Q 017200 90 DKYVQIKKKLRELKLHTVCEEAKCPNLGECWSGGETGTATATI-----MILGDTCTRGCRFCNVKTSRA-PP--PPDPDE 161 (375)
Q Consensus 90 ~~~~~~~~~l~~~~L~tvceeA~cpn~~ec~~~~~~~~~tatf-----m~i~d~C~~~C~FC~v~~~r~-~~--~ld~eE 161 (375)
-+.+++..+|...++..+++.|+-.+... +|+ .++| +..+|+|+++|.||+++...+ +. .+++||
T Consensus 11 ls~~e~~~L~~~~~~~~L~~~A~~vr~~~-~g~------~v~~~~~~~in~Tn~C~~~C~FCa~~~~~~~~~~y~l~~ee 83 (351)
T TIGR03700 11 LSFEDGLFLYASDDLLTLGELAALVRERK-HGD------KVYFNVNRHLNYTNICVNGCAFCAFQRERGEPGAYAMSLEE 83 (351)
T ss_pred CCHHHHHHHcCCCcHHHHHHHHHHHHHHh-cCC------eEEEeccCCcccccccccCCccCceeCCCCCcccCCCCHHH
Confidence 34677888888778999999998776543 333 4555 446999999999999987432 22 389999
Q ss_pred HHHHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCCCcEEEeecCC-------CCC--ChHHHHHHHHcC
Q 017200 162 PTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPD-------FRG--NNGCVREVAKSG 232 (375)
Q Consensus 162 i~~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p~i~Ie~l~pd-------~~g--~~e~l~~L~~aG 232 (375)
+++.++++.+.|+++|+|+||++++++ .+++.++++.||+.+|++.+++++|. ..| +.+.++.|+++|
T Consensus 84 I~~~a~~~~~~G~~~v~l~~G~~p~~~---~~~~~e~i~~Ik~~~p~i~i~~~~~~ei~~~~~~~g~~~~e~l~~LkeAG 160 (351)
T TIGR03700 84 IVARVKEAYAPGATEVHIVGGLHPNLP---FEWYLDMIRTLKEAYPDLHVKAFTAVEIHHFSKISGLPTEEVLDELKEAG 160 (351)
T ss_pred HHHHHHHHHHCCCcEEEEecCCCCCCC---HHHHHHHHHHHHHHCCCceEEeCCHHHHHHHHHHcCCCHHHHHHHHHHcC
Confidence 999999999999999999999888764 78999999999999999999987763 112 477899999999
Q ss_pred cccccc-cccc-hHHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcCCcE----
Q 017200 233 LNVFAH-NIET-VEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDV---- 306 (375)
Q Consensus 233 ldv~~h-nlEt-v~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~tkt~imvGlGET~ee~~etl~~Lrelgvd~---- 306 (375)
+|.++| ++|+ .+++++++++.+.++++|+++++.|++ .|+.++++||+|+|||++|+++++..|++++++.
T Consensus 161 ld~~~~~g~E~~~~~v~~~i~~~~~~~~~~l~~i~~a~~---~Gi~~~sg~i~GlgEt~edrv~~l~~Lr~l~~~~~~f~ 237 (351)
T TIGR03700 161 LDSMPGGGAEIFAEEVRQQICPEKISAERWLEIHRTAHE---LGLKTNATMLYGHIETPAHRVDHMLRLRELQDETGGFQ 237 (351)
T ss_pred CCcCCCCcccccCHHHHhhcCCCCCCHHHHHHHHHHHHH---cCCCcceEEEeeCCCCHHHHHHHHHHHHHhhHhhCCce
Confidence 999998 6998 579999999656788999999999999 5899999999999999999999999999999865
Q ss_pred --EeeecCCCCCCCCCCcccc--CCHHHHHHHHHHHHHhhh
Q 017200 307 --MTFGQYMRPSKRHMPVSEY--ITPEAFERYRALGMEMGF 343 (375)
Q Consensus 307 --v~i~qYl~P~~~~~~v~~~--v~pe~~~~l~~~a~~~gf 343 (375)
|++ +|. | .++|+... ..+...+.|+.+|..+=+
T Consensus 238 ~fiP~-~f~-~--~~tpl~~~~~~~~~~~e~lr~iA~~Rl~ 274 (351)
T TIGR03700 238 AFIPL-AFQ-P--DNNRLNRLLAKGPTGLDDLKTLAVSRLY 274 (351)
T ss_pred EEEee-ccc-C--CCCcccCCCCCCCCHHHHHHHHHHHHHh
Confidence 444 333 3 34555443 446678889888887433
No 12
>PRK05926 hypothetical protein; Provisional
Probab=99.96 E-value=1.3e-28 Score=246.75 Aligned_cols=240 Identities=15% Similarity=0.172 Sum_probs=191.7
Q ss_pred ccHHHHHHHHh---ccChhhhhhhcCCCCcccccCCCCCCccEEEEee-----eCCccCCCCcCCCCCCCCC-CC--CCC
Q 017200 90 DKYVQIKKKLR---ELKLHTVCEEAKCPNLGECWSGGETGTATATIMI-----LGDTCTRGCRFCNVKTSRA-PP--PPD 158 (375)
Q Consensus 90 ~~~~~~~~~l~---~~~L~tvceeA~cpn~~ec~~~~~~~~~tatfm~-----i~d~C~~~C~FC~v~~~r~-~~--~ld 158 (375)
-..++...+|. ..+|..+++.|+..+... +| . .++|.. .+|.|..+|.||++....+ +. .++
T Consensus 28 ls~eeal~Ll~~~~~~~l~~L~~~A~~iR~~~-~G-~-----~V~~~~~~nin~Tn~C~~dC~FCaf~~~~~~~~~~~ls 100 (370)
T PRK05926 28 LSEEDALQLLLLTDAEDQRALWSFADLIRANR-VG-D-----TVYYSSTLYLYPTNFCQFNCTFCSFYAKPGDPKGWFYT 100 (370)
T ss_pred CCHHHHHHHHhCCCchHHHHHHHHHHHHHHHh-cC-C-----eEEEEEeeeeecCCCCCCCCCccccccCCCCcccccCC
Confidence 34677777773 357889999998877653 34 3 566642 4999999999999876432 22 389
Q ss_pred cchHHHHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCCCcEEEeecCC---C------CCChHHHHHHH
Q 017200 159 PDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPD---F------RGNNGCVREVA 229 (375)
Q Consensus 159 ~eEi~~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p~i~Ie~l~pd---~------~g~~e~l~~L~ 229 (375)
+||+++.|+++ ..|+++++|+||.+++++ .++|.++++.|++.+|++.+++++|. + ....|.++.|+
T Consensus 101 ~eeI~~~a~~a-~~G~~ei~iv~G~~p~~~---~e~~~e~i~~Ik~~~p~i~i~a~s~~Ei~~~~~~~~~~~~e~l~~Lk 176 (370)
T PRK05926 101 PDQLVQSIKEN-PSPITETHIVAGCFPSCN---LAYYEELFSKIKQNFPDLHIKALTAIEYAYLSKLDNLPVKEVLQTLK 176 (370)
T ss_pred HHHHHHHHHHH-hcCCCEEEEEeCcCCCCC---HHHHHHHHHHHHHhCCCeeEEECCHHHHHHHHhhcCCCHHHHHHHHH
Confidence 99999999998 699999999999887754 78999999999999999999988763 1 11478899999
Q ss_pred HcCccccccc-ccch-HHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcCCcEE
Q 017200 230 KSGLNVFAHN-IETV-EELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVM 307 (375)
Q Consensus 230 ~aGldv~~hn-lEtv-~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~tkt~imvGlGET~ee~~etl~~Lrelgvd~v 307 (375)
++|+|.|+|+ +|+. ++++++++|.+.++++|+++++.||+ .|+.++++||+|+|||+||+++++..||+++++.+
T Consensus 177 eAGl~~~~g~GaEi~~e~~r~~~~p~~~t~~e~l~~i~~a~~---~Gi~~~sgmi~G~gEt~edrv~~l~~Lr~Lq~~t~ 253 (370)
T PRK05926 177 IAGLDSIPGGGAEILVDEIRETLAPGRLSSQGFLEIHKTAHS---LGIPSNATMLCYHRETPEDIVTHMSKLRALQDKTS 253 (370)
T ss_pred HcCcCccCCCCchhcCHHHHHhhCCCCCCHHHHHHHHHHHHH---cCCcccCceEEeCCCCHHHHHHHHHHHHhcCCccC
Confidence 9999999997 9975 58888899778899999999999999 68999999999999999999999999999999987
Q ss_pred eeecCC----CCCCCCCCccc----cCCHHHHHHHHHHHHHhhhhh
Q 017200 308 TFGQYM----RPSKRHMPVSE----YITPEAFERYRALGMEMGFRY 345 (375)
Q Consensus 308 ~i~qYl----~P~~~~~~v~~----~v~pe~~~~l~~~a~~~gf~~ 345 (375)
+|..|+ +|. ++++.. .......+.|+.+|.++=|+-
T Consensus 254 gf~~fIp~~f~~~--~t~l~~~~~~~~~~~~~~~lr~~AvaRl~l~ 297 (370)
T PRK05926 254 GFKNFILLKFASE--NNALGKRLRKMGSRHSIPPASIIAVARLFLD 297 (370)
T ss_pred CeeeeEecccCCC--CCcccccccccCCCChHHHHHHHHHHHHhcC
Confidence 777664 352 333321 112334577898988876654
No 13
>PRK08445 hypothetical protein; Provisional
Probab=99.96 E-value=3.2e-28 Score=242.34 Aligned_cols=237 Identities=14% Similarity=0.211 Sum_probs=189.9
Q ss_pred HHHHHHHHhccChhhhhhhcCCCCcccccCCCCCCccEEEEee-----eCCccCCCCcCCCCCCCC-CCC--CCCcchHH
Q 017200 92 YVQIKKKLRELKLHTVCEEAKCPNLGECWSGGETGTATATIMI-----LGDTCTRGCRFCNVKTSR-APP--PPDPDEPT 163 (375)
Q Consensus 92 ~~~~~~~l~~~~L~tvceeA~cpn~~ec~~~~~~~~~tatfm~-----i~d~C~~~C~FC~v~~~r-~~~--~ld~eEi~ 163 (375)
.++...+|...+|..+++.|+-.+.. .+|+. ..+|++ .+++|..+|.||+++... .+. .++++||+
T Consensus 6 ~~e~l~Ll~~~~l~~L~~~A~~vr~~-~~g~~-----v~~~~~~~~in~Tn~C~~~C~FCa~~~~~~~~~~y~l~~eeI~ 79 (348)
T PRK08445 6 KEEALDLIKNAPLKELGEMALERKQE-LHPEK-----ITTFIVDRNINYTNICWVDCKFCAFYRHLKEDDAYILSFEEID 79 (348)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHH-HcCCc-----EEEEecccccccccccccCCccCCCccCCCCCCCeeCCHHHHH
Confidence 56777788888899999999876664 23443 566554 599999999999998742 222 37999999
Q ss_pred HHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCCCcEEEeecCC---CC----C--ChHHHHHHHHcCcc
Q 017200 164 NVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPD---FR----G--NNGCVREVAKSGLN 234 (375)
Q Consensus 164 ~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p~i~Ie~l~pd---~~----g--~~e~l~~L~~aGld 234 (375)
+.++++.+.|.++|+++|++.++++ .+++.++++.|++.+|++.+.++++. +. + .+|.++.|+++|++
T Consensus 80 ~~~~~a~~~g~~~i~~~gg~~~~~~---~e~~~~l~~~Ik~~~p~i~~~a~s~~ei~~~a~~~~~~~~e~L~~LkeAGl~ 156 (348)
T PRK08445 80 KKIEELLAIGGTQILFQGGVHPKLK---IEWYENLVSHIAQKYPTITIHGFSAVEIDYIAKISKISIKEVLERLQAKGLS 156 (348)
T ss_pred HHHHHHHHcCCCEEEEecCCCCCCC---HHHHHHHHHHHHHHCCCcEEEEccHHHHHHHHHHhCCCHHHHHHHHHHcCCC
Confidence 9999999999999999998887765 78999999999999999999876652 11 1 37999999999999
Q ss_pred cccc-cccch-HHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcCCcEEeeec-
Q 017200 235 VFAH-NIETV-EELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQ- 311 (375)
Q Consensus 235 v~~h-nlEtv-~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~tkt~imvGlGET~ee~~etl~~Lrelgvd~v~i~q- 311 (375)
.|+| ++|+. +++++.+++.+.+.++|+++++.||+ .|+.++++||+|+|||.+|+++++..|++++++..+|..
T Consensus 157 ~~~g~glE~~~d~v~~~~~pk~~t~~~~i~~i~~a~~---~Gi~~~sg~i~G~~Et~edr~~~l~~lreLq~~~~g~~~f 233 (348)
T PRK08445 157 SIPGAGAEILSDRVRDIIAPKKLDSDRWLEVHRQAHL---IGMKSTATMMFGTVENDEEIIEHWERIRDLQDETGGFRAF 233 (348)
T ss_pred CCCCCceeeCCHHHHHhhCCCCCCHHHHHHHHHHHHH---cCCeeeeEEEecCCCCHHHHHHHHHHHHHHHHHhCCeeEE
Confidence 9997 59975 59999998789999999999999999 689999999999999999999999999999987533322
Q ss_pred ---CCCCCCCCCCcccc----CCHHHHHHHHHHHHHhh
Q 017200 312 ---YMRPSKRHMPVSEY----ITPEAFERYRALGMEMG 342 (375)
Q Consensus 312 ---Yl~P~~~~~~v~~~----v~pe~~~~l~~~a~~~g 342 (375)
.++| .++|+... ..+...+.|+.+|..+=
T Consensus 234 i~~~~~p--~~tpl~~~~~~~~~~~~~e~Lr~iAv~Rl 269 (348)
T PRK08445 234 ILWSFQP--DNTPLKEEIPEIKKQSSNRYLRLLAVSRL 269 (348)
T ss_pred eccccCC--CCCcccccCCCCCCCCHHHHHHHHHHHHH
Confidence 2355 34454321 12344677888887743
No 14
>PRK08508 biotin synthase; Provisional
Probab=99.96 E-value=1.2e-27 Score=231.47 Aligned_cols=204 Identities=18% Similarity=0.251 Sum_probs=166.1
Q ss_pred EEEEeee-CCccCCCCcCCCCCCC-CC-C--CC-CCcchHHHHHHHHHhcCCcEEEEE-eeeCCCCCcccHHHHHHHHHH
Q 017200 129 TATIMIL-GDTCTRGCRFCNVKTS-RA-P--PP-PDPDEPTNVAEAIASWGLDYVVIT-SVDRDDLADQGSGHFAQTVRK 201 (375)
Q Consensus 129 tatfm~i-~d~C~~~C~FC~v~~~-r~-~--~~-ld~eEi~~~a~al~~~G~~eIvLT-sgdr~dl~d~G~~~~~~lir~ 201 (375)
..+++.+ +.+|+.+|.||+++.. .. . .. +++||+++.|+.+.+.|+++++++ +|...+ +...+++.++++.
T Consensus 6 ~~~i~~~~s~gC~~~C~FCa~~~~~~~~~~~y~~~s~eeI~~~a~~a~~~g~~~~~lv~sg~~~~--~~~~e~~~ei~~~ 83 (279)
T PRK08508 6 LCAISNISSGNCKEDCKYCTQSAHYKADIKRYKRKDIEQIVQEAKMAKANGALGFCLVTSGRGLD--DKKLEYVAEAAKA 83 (279)
T ss_pred EEEEeccccCCCCCCCcCCCCcccCCCCCccccCCCHHHHHHHHHHHHHCCCCEEEEEeccCCCC--cccHHHHHHHHHH
Confidence 3444433 7899999999999863 22 1 13 699999999999999999999885 665322 2347899999999
Q ss_pred HHHhCCCcEEEeecCCCCCChHHHHHHHHcCcccccccccchHHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeE
Q 017200 202 LKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSI 281 (375)
Q Consensus 202 Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGldv~~hnlEtv~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~tkt~i 281 (375)
||+..|++.+.++.+.. +.|.++.|+++|+|.++||+||.+++|+.++ ..++|++++++++.|++ .|+.+++++
T Consensus 84 ik~~~p~l~i~~s~G~~--~~e~l~~Lk~aGld~~~~~lEt~~~~~~~i~-~~~~~~~~l~~i~~a~~---~Gi~v~sg~ 157 (279)
T PRK08508 84 VKKEVPGLHLIACNGTA--SVEQLKELKKAGIFSYNHNLETSKEFFPKIC-TTHTWEERFQTCENAKE---AGLGLCSGG 157 (279)
T ss_pred HHhhCCCcEEEecCCCC--CHHHHHHHHHcCCCEEcccccchHHHhcCCC-CCCCHHHHHHHHHHHHH---cCCeeccee
Confidence 99988888887766555 7999999999999999999999999999999 58999999999999999 589999999
Q ss_pred EEecCCCHHHHHHHHHHHHHcCCcEEeeecCCCCCCCCCCccccCCHHHHHHHHHHHHHhhh
Q 017200 282 MLGCGETPDQVVSTMEKVRAAGVDVMTFGQYMRPSKRHMPVSEYITPEAFERYRALGMEMGF 343 (375)
Q Consensus 282 mvGlGET~ee~~etl~~Lrelgvd~v~i~qYl~P~~~~~~v~~~v~pe~~~~l~~~a~~~gf 343 (375)
|+|+|||+||+++++.+|++++++.|++ +|+.| .+++|+... .....+.++.+|..+=+
T Consensus 158 I~GlGEt~ed~~~~l~~lr~L~~~svpl-~~~~p-~~~t~~~~~-~~~~~~~lr~iAv~Rl~ 216 (279)
T PRK08508 158 IFGLGESWEDRISFLKSLASLSPHSTPI-NFFIP-NPALPLKAP-TLSADEALEIVRLAKEA 216 (279)
T ss_pred EEecCCCHHHHHHHHHHHHcCCCCEEee-CCcCC-CCCCCCCCC-CCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999 67777 345665421 23345667666665433
No 15
>PRK15108 biotin synthase; Provisional
Probab=99.96 E-value=2.6e-27 Score=235.55 Aligned_cols=234 Identities=15% Similarity=0.255 Sum_probs=179.1
Q ss_pred HHHHHHHHhccChhhhhhhcCCCCcccccCCCCCCccEEEEeee-CCccCCCCcCCCCCCCC-C--C-CC-CCcchHHHH
Q 017200 92 YVQIKKKLRELKLHTVCEEAKCPNLGECWSGGETGTATATIMIL-GDTCTRGCRFCNVKTSR-A--P-PP-PDPDEPTNV 165 (375)
Q Consensus 92 ~~~~~~~l~~~~L~tvceeA~cpn~~ec~~~~~~~~~tatfm~i-~d~C~~~C~FC~v~~~r-~--~-~~-ld~eEi~~~ 165 (375)
.++...++. .+|..++..|+-.+.. .|+++ .....+++.+ +|+|+.+|.||+++... . + .. +++||+++.
T Consensus 9 ~~e~~~l~~-~~l~~l~~~A~~ir~~-~fg~~--~v~l~~i~~~~Tn~C~~~C~yC~~~~~~~~~~~~~~~ls~eEI~~~ 84 (345)
T PRK15108 9 LSQVTELFE-KPLLELLFEAQQVHRQ-HFDPR--QVQVSTLLSIKTGACPEDCKYCPQSSRYKTGLEAERLMEVEQVLES 84 (345)
T ss_pred HHHHHHHHc-ccHHHHHHHHHHHHHH-hcCCC--EEEEEEeEEEECCCcCCCCcCCCCcccCCCCCCcccCCCHHHHHHH
Confidence 566677764 4888888888766554 34432 1122344444 99999999999998532 1 1 22 899999999
Q ss_pred HHHHHhcCCcEEEEEeee-CCCCCcccHHHHHHHHHHHHHhCCCcEEEeecCCCCCChHHHHHHHHcCcccccccccchH
Q 017200 166 AEAIASWGLDYVVITSVD-RDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETVE 244 (375)
Q Consensus 166 a~al~~~G~~eIvLTsgd-r~dl~d~G~~~~~~lir~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGldv~~hnlEtv~ 244 (375)
|+.+.+.|+++++++++. .+ ++...+++.++++.||+. .+.+.+..+.. +.+.++.|+++|+|.|+|++||.+
T Consensus 85 a~~~~~~G~~~i~i~~~g~~p--~~~~~e~i~~~i~~ik~~--~i~v~~s~G~l--s~e~l~~LkeAGld~~n~~leT~p 158 (345)
T PRK15108 85 ARKAKAAGSTRFCMGAAWKNP--HERDMPYLEQMVQGVKAM--GLETCMTLGTL--SESQAQRLANAGLDYYNHNLDTSP 158 (345)
T ss_pred HHHHHHcCCCEEEEEecCCCC--CcchHHHHHHHHHHHHhC--CCEEEEeCCcC--CHHHHHHHHHcCCCEEeeccccCh
Confidence 999999999999996553 33 222378999999999864 35554444444 699999999999999999999988
Q ss_pred HHHHHhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHc--CCcEEeeecCCCCCCCCCCc
Q 017200 245 ELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAA--GVDVMTFGQYMRPSKRHMPV 322 (375)
Q Consensus 245 rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~tkt~imvGlGET~ee~~etl~~Lrel--gvd~v~i~qYl~P~~~~~~v 322 (375)
+.|++++ .+++|++|+++++.+++ .|+.+++++|+|+|||++|+++++..|+++ +++.|++ +++.|. +++|+
T Consensus 159 ~~f~~I~-~~~~~~~rl~~i~~a~~---~G~~v~sg~i~GlgEt~ed~v~~~~~l~~l~~~~~~ip~-~~~~P~-~gTpl 232 (345)
T PRK15108 159 EFYGNII-TTRTYQERLDTLEKVRD---AGIKVCSGGIVGLGETVKDRAGLLLQLANLPTPPESVPI-NMLVKV-KGTPL 232 (345)
T ss_pred HhcCCCC-CCCCHHHHHHHHHHHHH---cCCceeeEEEEeCCCCHHHHHHHHHHHHhccCCCCEEEe-CCccCC-CCCCC
Confidence 9999999 58899999999999999 689999999999999999999999999999 5689999 566663 46666
Q ss_pred cccCCHHHHHHHHHHHHHh
Q 017200 323 SEYITPEAFERYRALGMEM 341 (375)
Q Consensus 323 ~~~v~pe~~~~l~~~a~~~ 341 (375)
.........+.|+.+|..+
T Consensus 233 ~~~~~~~~~e~lr~iAi~R 251 (345)
T PRK15108 233 ADNDDVDAFDFIRTIAVAR 251 (345)
T ss_pred CCCCCCCHHHHHHHHHHHH
Confidence 5432223456666666553
No 16
>COG0502 BioB Biotin synthase and related enzymes [Coenzyme metabolism]
Probab=99.95 E-value=2.5e-27 Score=232.46 Aligned_cols=212 Identities=17% Similarity=0.304 Sum_probs=173.7
Q ss_pred EEEEeeeCCc-cCCCCcCCCCCCC-CCCC----CCCcchHHHHHHHHHhcC-CcEEEEEeeeCCCCCcccHHHHHHHHHH
Q 017200 129 TATIMILGDT-CTRGCRFCNVKTS-RAPP----PPDPDEPTNVAEAIASWG-LDYVVITSVDRDDLADQGSGHFAQTVRK 201 (375)
Q Consensus 129 tatfm~i~d~-C~~~C~FC~v~~~-r~~~----~ld~eEi~~~a~al~~~G-~~eIvLTsgdr~dl~d~G~~~~~~lir~ 201 (375)
..++|.+.++ |+.+|.||+++.. +.+. .+++|||++.|+++++.| .+++.++||.. ...+ ..++.++++.
T Consensus 50 l~~ii~iktg~c~edC~yC~qS~~~~~~~~~~~l~~~eeIle~Ak~ak~~Ga~r~c~~aagr~-~~~~--~~~i~~~v~~ 126 (335)
T COG0502 50 LSTLISIKTGCCPEDCAYCSQSARYKTGVKARKLMEVEEILEAAKKAKAAGATRFCMGAAGRG-PGRD--MEEVVEAIKA 126 (335)
T ss_pred EEEEEEeecCCCCCCCCCccccccCcCCCchhhcCCHHHHHHHHHHHHHcCCceEEEEEeccC-CCcc--HHHHHHHHHH
Confidence 4455555444 5999999999973 2221 279999999999999999 57777777754 2123 7889999999
Q ss_pred HHHhCCCcEEEeecCCCCCChHHHHHHHHcCcccccccccchHHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeE
Q 017200 202 LKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSI 281 (375)
Q Consensus 202 Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGldv~~hnlEtv~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~tkt~i 281 (375)
||+... +.+.+..+.. +.|+++.|+++|+|.|+||+||++++|+.|+ .+++|++++++++.+++ .|+.+++|+
T Consensus 127 Vk~~~~-le~c~slG~l--~~eq~~~L~~aGvd~ynhNLeTs~~~y~~I~-tt~t~edR~~tl~~vk~---~Gi~vcsGg 199 (335)
T COG0502 127 VKEELG-LEVCASLGML--TEEQAEKLADAGVDRYNHNLETSPEFYENII-TTRTYEDRLNTLENVRE---AGIEVCSGG 199 (335)
T ss_pred HHHhcC-cHHhhccCCC--CHHHHHHHHHcChhheecccccCHHHHcccC-CCCCHHHHHHHHHHHHH---cCCccccce
Confidence 997664 7777777766 8999999999999999999999999999999 59999999999999999 689999999
Q ss_pred EEecCCCHHHHHHHHHHHHHcC-CcEEeeecCCCCCCCCCCccccCCHHHHHHHHHHHHHhhhhhhccchhhhhh
Q 017200 282 MLGCGETPDQVVSTMEKVRAAG-VDVMTFGQYMRPSKRHMPVSEYITPEAFERYRALGMEMGFRYVASGPMVRSS 355 (375)
Q Consensus 282 mvGlGET~ee~~etl~~Lrelg-vd~v~i~qYl~P~~~~~~v~~~v~pe~~~~l~~~a~~~gf~~~~sgp~vrss 355 (375)
|||+|||.+|+++++..|++++ +|.||| +++.| .+++|+.+.-..+-++.++.+|.. +..+.--++|.|
T Consensus 200 I~GlGEs~eDri~~l~~L~~l~~pdsVPI-n~l~P-~~GTPle~~~~~~~~e~lk~IA~~---Ri~~P~~~Ir~s 269 (335)
T COG0502 200 IVGLGETVEDRAELLLELANLPTPDSVPI-NFLNP-IPGTPLENAKPLDPFEFLKTIAVA---RIIMPKSMIRLS 269 (335)
T ss_pred EecCCCCHHHHHHHHHHHHhCCCCCeeee-eeecC-CCCCccccCCCCCHHHHHHHHHHH---HHHCCcceeEcc
Confidence 9999999999999999999999 999999 67778 458888865445568888888765 444444455544
No 17
>PLN02389 biotin synthase
Probab=99.95 E-value=7.1e-27 Score=234.89 Aligned_cols=237 Identities=14% Similarity=0.240 Sum_probs=182.6
Q ss_pred cHHHHHHHHhccChhhhhhhcCCCCcccccCCCCCCccEEEEeee-CCccCCCCcCCCCCCCC--C-C-C-CCCcchHHH
Q 017200 91 KYVQIKKKLRELKLHTVCEEAKCPNLGECWSGGETGTATATIMIL-GDTCTRGCRFCNVKTSR--A-P-P-PPDPDEPTN 164 (375)
Q Consensus 91 ~~~~~~~~l~~~~L~tvceeA~cpn~~ec~~~~~~~~~tatfm~i-~d~C~~~C~FC~v~~~r--~-~-~-~ld~eEi~~ 164 (375)
.++++..++.. +|..++..|.-.+...+ ++. .-...+++.+ +++|+.+|.||+++... + + . .+++||+++
T Consensus 48 t~~e~l~L~~~-~l~~l~~~A~~vr~~~~-~~~--~v~~~~i~n~~T~~C~~~C~fCaqs~~~~~~~~~~~~Ls~EeIl~ 123 (379)
T PLN02389 48 TRDEIKEVYDS-PLLDLLFHGAQVHRHAH-DPR--EVQQCTLLSIKTGGCSEDCSYCPQSSRYDTGVKAQKLMSKDDVLE 123 (379)
T ss_pred CHHHHHHHHcC-cHHHHHHHHHHHHHHhc-CCC--EEEEEEEEEeccCCcCcCCCCCCCcccCCCCCcccccCCHHHHHH
Confidence 47788888754 88888888887776544 332 1122333434 89999999999998632 1 1 1 389999999
Q ss_pred HHHHHHhcCCcEEEEEeeeCCCC-CcccHHHHHHHHHHHHHhCCCcEEEeecCCCCCChHHHHHHHHcCcccccccccch
Q 017200 165 VAEAIASWGLDYVVITSVDRDDL-ADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETV 243 (375)
Q Consensus 165 ~a~al~~~G~~eIvLTsgdr~dl-~d~G~~~~~~lir~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGldv~~hnlEtv 243 (375)
.|+.+.+.|+++++|++..+... ++..++++.++++.||+. .+.|.+..+.. +.|.++.|+++|+|.|+|++||+
T Consensus 124 ~a~~~~~~G~~~~~ivts~rg~~~e~~~~e~i~eiir~ik~~--~l~i~~s~G~l--~~E~l~~LkeAGld~~~~~LeTs 199 (379)
T PLN02389 124 AAKRAKEAGSTRFCMGAAWRDTVGRKTNFNQILEYVKEIRGM--GMEVCCTLGML--EKEQAAQLKEAGLTAYNHNLDTS 199 (379)
T ss_pred HHHHHHHcCCCEEEEEecccCCCCChhHHHHHHHHHHHHhcC--CcEEEECCCCC--CHHHHHHHHHcCCCEEEeeecCC
Confidence 99999999999999874432211 112378899999999864 35565555444 78999999999999999999998
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHc--CCcEEeeecCCCCCCCCCC
Q 017200 244 EELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAA--GVDVMTFGQYMRPSKRHMP 321 (375)
Q Consensus 244 ~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~tkt~imvGlGET~ee~~etl~~Lrel--gvd~v~i~qYl~P~~~~~~ 321 (375)
+++|++++ .+++|++|+++++.|++ .|+.+++++|+|+|||++|+++++..|+++ +++.|++ +++.|. +++|
T Consensus 200 ~~~y~~i~-~~~s~e~rl~ti~~a~~---~Gi~v~sg~IiGlgEt~edrv~~l~~Lr~L~~~~~~v~l-~~l~P~-~GTp 273 (379)
T PLN02389 200 REYYPNVI-TTRSYDDRLETLEAVRE---AGISVCSGGIIGLGEAEEDRVGLLHTLATLPEHPESVPI-NALVAV-KGTP 273 (379)
T ss_pred hHHhCCcC-CCCCHHHHHHHHHHHHH---cCCeEeEEEEECCCCCHHHHHHHHHHHHhcccCCcEEec-ccceec-CCCc
Confidence 89999999 47899999999999999 589999999999999999999999999999 5789999 566673 4677
Q ss_pred ccccCCHHHHHHHHHHHHHh
Q 017200 322 VSEYITPEAFERYRALGMEM 341 (375)
Q Consensus 322 v~~~v~pe~~~~l~~~a~~~ 341 (375)
+.....+...+.++.+|..+
T Consensus 274 L~~~~~~s~~e~lr~iAi~R 293 (379)
T PLN02389 274 LEDQKPVEIWEMVRMIATAR 293 (379)
T ss_pred CCCCCCCCHHHHHHHHHHHH
Confidence 66543445566677666653
No 18
>PRK09234 fbiC FO synthase; Reviewed
Probab=99.95 E-value=8e-27 Score=253.74 Aligned_cols=240 Identities=17% Similarity=0.234 Sum_probs=193.4
Q ss_pred ccHHHHHHHHh--ccChhhhhhhcCCCCcccccCCCCCCccEEEEee-----eCCccCCCCcCCCCCCCCC-C--CCCCc
Q 017200 90 DKYVQIKKKLR--ELKLHTVCEEAKCPNLGECWSGGETGTATATIMI-----LGDTCTRGCRFCNVKTSRA-P--PPPDP 159 (375)
Q Consensus 90 ~~~~~~~~~l~--~~~L~tvceeA~cpn~~ec~~~~~~~~~tatfm~-----i~d~C~~~C~FC~v~~~r~-~--~~ld~ 159 (375)
-..++...++. +.+|..+|+.|+-.+... +| . +++|++ ++|.|..+|+||+|+...+ . ..+++
T Consensus 487 ls~~eal~Ll~~~~~~l~~L~~~Ad~iR~~~-~G-~-----~Vt~vvn~~In~TN~C~~~C~FCafs~~~~~~~~y~Ls~ 559 (843)
T PRK09234 487 LTDDEALALFTADGPALEAVCRLADDLRRDV-VG-D-----DVTYVVNRNINFTNICYTGCRFCAFAQRKTDADAYTLSL 559 (843)
T ss_pred CCHHHHHHHHcCCchhHHHHHHHHHHHHHHh-cC-C-----eEEEEEeeceecCCCCCCCCcccccccCCCCCCcccCCH
Confidence 45777888885 457999999998777653 34 3 677743 4899999999999997532 2 24899
Q ss_pred chHHHHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCCCcEEEeecCC-C--------CCChHHHHHHHH
Q 017200 160 DEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPD-F--------RGNNGCVREVAK 230 (375)
Q Consensus 160 eEi~~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p~i~Ie~l~pd-~--------~g~~e~l~~L~~ 230 (375)
|||++.|+++.+.|+++|+|+||.+++++ .++|.++++.||+.+|++.|++++|. . ....|.++.|++
T Consensus 560 eeI~~~a~ea~~~G~tev~i~gG~~p~~~---~~~y~~lir~IK~~~p~i~i~afsp~Ei~~~a~~~Gl~~~e~l~~Lke 636 (843)
T PRK09234 560 DEVADRAWEAWVAGATEVCMQGGIHPELP---GTGYADLVRAVKARVPSMHVHAFSPMEIVNGAARLGLSIREWLTALRE 636 (843)
T ss_pred HHHHHHHHHHHHCCCCEEEEecCCCCCcC---HHHHHHHHHHHHHhCCCeeEEecChHHHHHHHHHcCCCHHHHHHHHHH
Confidence 99999999999999999999999887765 68999999999999999999998871 1 125899999999
Q ss_pred cCccccccc-ccch-HHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcCCc---
Q 017200 231 SGLNVFAHN-IETV-EELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVD--- 305 (375)
Q Consensus 231 aGldv~~hn-lEtv-~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~tkt~imvGlGET~ee~~etl~~Lrelgvd--- 305 (375)
+|+|.|++. .|.. +++++.++|.+.+.++|+++++.||+ .|+.++++||+|+|||.+|++++|..||+++++
T Consensus 637 AGLds~pgt~aeil~d~vr~~i~p~k~~~~~wle~i~~Ah~---lGi~~~stmm~G~~Et~edrv~hl~~LreLq~~tgG 713 (843)
T PRK09234 637 AGLDTIPGTAAEILDDEVRWVLTKGKLPTAEWIEVVTTAHE---VGLRSSSTMMYGHVDTPRHWVAHLRVLRDIQDRTGG 713 (843)
T ss_pred hCcCccCCCchhhCCHHHHhhcCCCCCCHHHHHHHHHHHHH---cCCCcccceEEcCCCCHHHHHHHHHHHHhcCcccCC
Confidence 999999985 4543 58988999778899999999999999 589999999999999999999999999999984
Q ss_pred ---EEeeecCCCCCCCCCCccc--cCCHHHHHHHHHHHHHhhhh
Q 017200 306 ---VMTFGQYMRPSKRHMPVSE--YITPEAFERYRALGMEMGFR 344 (375)
Q Consensus 306 ---~v~i~qYl~P~~~~~~v~~--~v~pe~~~~l~~~a~~~gf~ 344 (375)
+|++ +|+.|. ..++... ...+...+.|+.+|..+=++
T Consensus 714 f~~fIPl-~F~~~~-tpl~l~~~~~~~~t~~e~Lr~iAvaRl~L 755 (843)
T PRK09234 714 FTEFVPL-PFVHQN-APLYLAGAARPGPTHRENRAVHALARIML 755 (843)
T ss_pred eeeeeec-cccCCC-CCcccccCCCCCCCHHHHHHHHHHHHHhC
Confidence 7777 676553 2332221 12245578888888875554
No 19
>PRK07360 FO synthase subunit 2; Reviewed
Probab=99.95 E-value=9.9e-27 Score=233.50 Aligned_cols=235 Identities=15% Similarity=0.224 Sum_probs=180.0
Q ss_pred cHHHHHHHHhccC---hhhhhhhcCCCCcccccCCCCCCccEEEEe-----eeCCccCCCCcCCCCCCCCCCC---CCCc
Q 017200 91 KYVQIKKKLRELK---LHTVCEEAKCPNLGECWSGGETGTATATIM-----ILGDTCTRGCRFCNVKTSRAPP---PPDP 159 (375)
Q Consensus 91 ~~~~~~~~l~~~~---L~tvceeA~cpn~~ec~~~~~~~~~tatfm-----~i~d~C~~~C~FC~v~~~r~~~---~ld~ 159 (375)
+.+++..+|...+ |..+++.|+-.+.. .+| . .++|. .++|.|+.+|.||+++...+.. .+++
T Consensus 21 s~~e~~~Ll~~~~~~~l~~L~~~A~~ir~~-~~G-~-----~v~~~~~~~i~~Tn~C~~~C~fC~~~~~~~~~~~y~ls~ 93 (371)
T PRK07360 21 SKEDALELLETTEPRRIFEILELADRLRKE-QVG-D-----TVTYVVNRNINFTNICEGHCGFCAFRRDEGDHGAFWLTI 93 (371)
T ss_pred CHHHHHHHhcCCChHHHHHHHHHHHHHHHH-hcC-C-----eEEEEeccCcccchhhhcCCccCCcccCCCCCCCeeCCH
Confidence 4667777776544 77777777655554 233 3 56663 3499999999999998753222 3899
Q ss_pred chHHHHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCCCcEEEeecC----------CCCCChHHHHHHH
Q 017200 160 DEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVP----------DFRGNNGCVREVA 229 (375)
Q Consensus 160 eEi~~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p~i~Ie~l~p----------d~~g~~e~l~~L~ 229 (375)
||+++.|+++.+.|+++++||||.+++..+ .++++++++.||+.+|++.+.+++| .. ...+.++.|+
T Consensus 94 eeI~~~a~~a~~~G~~~i~l~~G~~p~~~~--~e~~~~~i~~ik~~~~~i~i~a~s~~ei~~~~~~~G~-~~~e~l~~Lk 170 (371)
T PRK07360 94 AEILEKAAEAVKRGATEVCIQGGLHPAADS--LEFYLEILEAIKEEFPDIHLHAFSPMEVYFAAREDGL-SYEEVLKALK 170 (371)
T ss_pred HHHHHHHHHHHhCCCCEEEEccCCCCCCCc--HHHHHHHHHHHHHhCCCcceeeCCHHHHHHHHhhcCC-CHHHHHHHHH
Confidence 999999999999999999999998777653 6889999999999889999998754 22 1578899999
Q ss_pred HcCccccccc-ccc-hHHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcCCcEE
Q 017200 230 KSGLNVFAHN-IET-VEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVM 307 (375)
Q Consensus 230 ~aGldv~~hn-lEt-v~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~tkt~imvGlGET~ee~~etl~~Lrelgvd~v 307 (375)
++|+|.|+.. .|. .+++++.+++.+.++++|+++++.|++ .|+.++|++|+|+|||++|+++++..|++++++..
T Consensus 171 eAGld~~~~t~~e~l~~~vr~~i~p~~~s~~~~l~~i~~a~~---~Gl~~~sg~i~G~gEt~edrv~~l~~lr~l~~~~~ 247 (371)
T PRK07360 171 DAGLDSMPGTAAEILVDEVRRIICPEKIKTAEWIEIVKTAHK---LGLPTTSTMMYGHVETPEHRIDHLLILREIQQETG 247 (371)
T ss_pred HcCCCcCCCcchhhccHHHHHhhCCCCCCHHHHHHHHHHHHH---cCCCceeeEEeeCCCCHHHHHHHHHHHHHhchhhC
Confidence 9999999532 343 247777888667899999999999999 68999999999999999999999999999999763
Q ss_pred eee-----cCCCCCCCCCCccccC----CHHHHHHHHHHHHHh
Q 017200 308 TFG-----QYMRPSKRHMPVSEYI----TPEAFERYRALGMEM 341 (375)
Q Consensus 308 ~i~-----qYl~P~~~~~~v~~~v----~pe~~~~l~~~a~~~ 341 (375)
+|. +|+.| ++|+.... .+...+.++.+|..+
T Consensus 248 g~~~fIp~~f~~~---~Tpl~~~~~~~~~~~~~~~lr~iAi~R 287 (371)
T PRK07360 248 GITEFVPLPFVHE---NAPLYERGRVKGGAPGLEDLLLYAVSR 287 (371)
T ss_pred CeeEEEeccccCC---CCccccccccCCCCCHHHHHHHHHHHH
Confidence 333 44433 44543321 123455588888763
No 20
>COG1060 ThiH Thiamine biosynthesis enzyme ThiH and related uncharacterized enzymes [Coenzyme metabolism / General function prediction only]
Probab=99.95 E-value=1.6e-26 Score=231.22 Aligned_cols=251 Identities=18% Similarity=0.263 Sum_probs=195.7
Q ss_pred cHHHHHHHHhccChhhhhhhcCCCCcccccCCCCCCccEEEEe-----eeCCccCCCCcCCCCCCCCC-CC--CCCcchH
Q 017200 91 KYVQIKKKLRELKLHTVCEEAKCPNLGECWSGGETGTATATIM-----ILGDTCTRGCRFCNVKTSRA-PP--PPDPDEP 162 (375)
Q Consensus 91 ~~~~~~~~l~~~~L~tvceeA~cpn~~ec~~~~~~~~~tatfm-----~i~d~C~~~C~FC~v~~~r~-~~--~ld~eEi 162 (375)
...+...+|...++.++.+.|.-.+...-- +. ++||+ .+||.|.++|.||+|....+ +. -|++|||
T Consensus 22 ~~~d~~~Ll~~~~~~~l~~~A~~~r~~~~~-~~-----~vtyv~n~~in~TN~C~~~C~fCaF~~~~~~~~~y~Ls~eeI 95 (370)
T COG1060 22 TREDALALLSPADLEELEELADKARRRKRV-GD-----GVTYVVNRNINYTNICVNDCTFCAFYRKPGDPKAYTLSPEEI 95 (370)
T ss_pred CHHHHHHHhccCcHHHHHHHHHHHHHhhcc-CC-----cEEEEEeecCCcchhhcCCCCccccccCCCCccccccCHHHH
Confidence 467778888877888888877766633222 22 56665 36999999999999998642 22 3999999
Q ss_pred HHHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCCCcEEEeecCC-C--------CCChHHHHHHHHcCc
Q 017200 163 TNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPD-F--------RGNNGCVREVAKSGL 233 (375)
Q Consensus 163 ~~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p~i~Ie~l~pd-~--------~g~~e~l~~L~~aGl 233 (375)
.++++++.+.|+++|+|+||.++++. .++|.++++.||+.+|++.|.++++. + ....|.+++|+++|+
T Consensus 96 ~~~~~~~~~~G~~Evli~gG~~p~~~---~~y~~~~~~~ik~~~p~~~i~a~s~~ei~~~~~~~~~s~~E~l~~Lk~aGl 172 (370)
T COG1060 96 LEEVREAVKRGITEVLIVGGEHPELS---LEYYEELFRTIKEEFPDLHIHALSAGEILFLAREGGLSYEEVLKRLKEAGL 172 (370)
T ss_pred HHHHHHHHHcCCeEEEEecCcCCCcc---hHHHHHHHHHHHHhCcchhhcccCHHHhHHHHhccCCCHHHHHHHHHHcCC
Confidence 99999999999999999999998875 56999999999999999999999873 2 113777999999999
Q ss_pred ccccccccc--hHHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcCCc------
Q 017200 234 NVFAHNIET--VEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVD------ 305 (375)
Q Consensus 234 dv~~hnlEt--v~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~tkt~imvGlGET~ee~~etl~~Lrelgvd------ 305 (375)
|.++.+.++ ++++.+.+++++.++++||++++.|++ .||+++++||+|++||.+|+++||..+|++|-.
T Consensus 173 dsmpg~~aeil~e~vr~~~~p~K~~~~~wle~~~~Ah~---lGI~~tatml~Gh~E~~ed~~~hl~~ir~lQ~~~gg~~~ 249 (370)
T COG1060 173 DSMPGGGAEILSEEVRKIHCPPKKSPEEWLEIHERAHR---LGIPTTATMLLGHVETREDRIDHLEHIRDLQDETGGFQE 249 (370)
T ss_pred CcCcCcceeechHHHHHhhCCCCCCHHHHHHHHHHHHH---cCCCccceeEEEecCCHHHHHHHHHHHHHHHHHhCCcEE
Confidence 999998764 458888888899999999999999999 689999999999999999999999999999742
Q ss_pred EEeeecCCCCCCCCCCccccCCHHHHHHHHHHHHHhhhhhh----ccchhhhhh
Q 017200 306 VMTFGQYMRPSKRHMPVSEYITPEAFERYRALGMEMGFRYV----ASGPMVRSS 355 (375)
Q Consensus 306 ~v~i~qYl~P~~~~~~v~~~v~pe~~~~l~~~a~~~gf~~~----~sgp~vrss 355 (375)
++++ -++|.+...+....-.+.-.+.++.+|.++=|+-. -..|+++.-
T Consensus 250 fI~~--~f~p~~~~~~~~~~~~~~~~~~l~~iAiaRi~l~~~i~~~~a~w~~~g 301 (370)
T COG1060 250 FIPL--RFRPENGPLPAEVVPEASLEQDLKAIALARIFLDNNISNIQASWLRDG 301 (370)
T ss_pred EEcc--cccCCCCCccccCCCCCCHHHHHHHHHHHHHHccCccccccCcccccc
Confidence 3333 35673322122221234568888989888766552 334555543
No 21
>TIGR03699 mena_SCO4550 menaquinone biosynthesis protein, SCO4550 family. members of this protein family are involved in menaquinone biosynthesis by an alternate pathway via futalosine.
Probab=99.95 E-value=1.1e-26 Score=230.12 Aligned_cols=236 Identities=17% Similarity=0.310 Sum_probs=184.5
Q ss_pred HHHHHHHHhccChhhhhhhcCCCCcccccCCCCCCccEEEEee-----eCCccCCCCcCCCCCCCCC-C--CCCCcchHH
Q 017200 92 YVQIKKKLRELKLHTVCEEAKCPNLGECWSGGETGTATATIMI-----LGDTCTRGCRFCNVKTSRA-P--PPPDPDEPT 163 (375)
Q Consensus 92 ~~~~~~~l~~~~L~tvceeA~cpn~~ec~~~~~~~~~tatfm~-----i~d~C~~~C~FC~v~~~r~-~--~~ld~eEi~ 163 (375)
.+++..+|...++..+++.|+-.+.. .|.|. .++|.. .+++|+.+|+||++....+ + ..++++|++
T Consensus 5 ~~~~~~ll~~~~~~~l~~~A~~vr~~-~~~g~-----~v~~~~~~~i~~s~~C~~~C~fC~~~~~~~~~~~~~ls~eei~ 78 (340)
T TIGR03699 5 REEALELYKEADLLALGALADEVRRR-RHPGN-----IVTFVVDRNINYTNICVVGCKFCAFYRAPGHPEGYVLSVEEIL 78 (340)
T ss_pred HHHHHHHccCCcHHHHHHHHHHHHHH-hcCCC-----eEEEEeecccccchhhccCCccCCcccCCCCccccCCCHHHHH
Confidence 56677778777888888888866664 34233 677643 5999999999999875432 2 238999999
Q ss_pred HHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCCCcEEEeecCC---CC----C--ChHHHHHHHHcCcc
Q 017200 164 NVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPD---FR----G--NNGCVREVAKSGLN 234 (375)
Q Consensus 164 ~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p~i~Ie~l~pd---~~----g--~~e~l~~L~~aGld 234 (375)
+.++.+++.|+++|+|+||..++++ .+++.++++.|++..|++.+.++++. +. | ..+.++.|+++|++
T Consensus 79 ~~~~~~~~~G~~~i~l~gG~~p~~~---~~~~~~li~~Ik~~~~~i~~~~~s~~ei~~~~~~~g~~~~e~l~~Lk~aG~~ 155 (340)
T TIGR03699 79 QKIEELVAYGGTQILLQGGVNPDLG---LDYYEDLFRAIKARFPHIHIHSFSPVEIVYIAKKEGLSLREVLERLKEAGLD 155 (340)
T ss_pred HHHHHHHHcCCcEEEEecCCCCCCC---HHHHHHHHHHHHHHCCCcCCCCCCHHHHHHHhccCCCCHHHHHHHHHHcCCC
Confidence 9999999999999999999766554 68899999999998888877665542 10 1 37899999999999
Q ss_pred cccc-cccch-HHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcCCcE------
Q 017200 235 VFAH-NIETV-EELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDV------ 306 (375)
Q Consensus 235 v~~h-nlEtv-~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~tkt~imvGlGET~ee~~etl~~Lrelgvd~------ 306 (375)
.++| ++|+. +++++.+.+.+.++++|+++++.+++ .|+.+++++|+|+|||++|+++++..|++++++.
T Consensus 156 ~~~~~g~E~~~~~~~~~~~~~~~s~~~~l~~i~~a~~---~Gi~v~~~~iiGlgEt~ed~~~~l~~l~~l~~~~~~~~~f 232 (340)
T TIGR03699 156 SIPGGGAEILSDRVRKIISPKKISSEEWLEVMETAHK---LGLPTTATMMFGHVETLEDRIEHLERIRELQDKTGGFTAF 232 (340)
T ss_pred cCCCCcccccCHHHHHhhCCCCCCHHHHHHHHHHHHH---cCCCccceeEeeCCCCHHHHHHHHHHHHHhchhhCCeeEE
Confidence 9997 58976 69999998667899999999999999 5899999999999999999999999999999865
Q ss_pred EeeecCCCCCCCCCCccccCCHHHHHHHHHHHHHhhh
Q 017200 307 MTFGQYMRPSKRHMPVSEYITPEAFERYRALGMEMGF 343 (375)
Q Consensus 307 v~i~qYl~P~~~~~~v~~~v~pe~~~~l~~~a~~~gf 343 (375)
||+ +|+ | ..+|+.....+...+.++.+|..+-+
T Consensus 233 IP~-~f~-p--~~tpl~~~~~~~~~e~l~~iA~~Rl~ 265 (340)
T TIGR03699 233 IPW-TFQ-P--GNTELGKKRPATSTEYLKVLAISRIF 265 (340)
T ss_pred Eee-ccc-C--CCCcccCCCCCCHHHHHHHHHHHHHc
Confidence 443 333 5 34555442234446677777777543
No 22
>TIGR00423 radical SAM domain protein, CofH subfamily. This protein family includes the CofH protein of coenzyme F(420) biosynthesis from Methanocaldococcus jannaschii, but appears to hit genomes more broadly than just the subset that make coenzyme F(420), so that narrower group is being built as a separate family.
Probab=99.95 E-value=2.5e-26 Score=225.03 Aligned_cols=202 Identities=16% Similarity=0.299 Sum_probs=163.4
Q ss_pred EEEeeeCCccCCCCcCCCCCCCCC-C--CCCCcchHHHHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhC
Q 017200 130 ATIMILGDTCTRGCRFCNVKTSRA-P--PPPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELK 206 (375)
Q Consensus 130 atfm~i~d~C~~~C~FC~v~~~r~-~--~~ld~eEi~~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~ 206 (375)
..++.++++|+++|.||+++...+ . ..+++|||++.++++.+.|+++|+|+||+.+++. .+++.++++.|++..
T Consensus 6 n~~i~~T~~C~~~C~FC~~~~~~~~~~~~~ls~eeI~~~~~~~~~~G~~~i~l~gg~~~~~~---~~~~~~i~~~Ik~~~ 82 (309)
T TIGR00423 6 NRNINFTNICVGKCKFCAFRAREKDKDAYVLSLEEILEKVKEAVAKGATEVCIQGGLNPQLD---IEYYEELFRAIKQEF 82 (309)
T ss_pred eeeecCccccccCCccCCCccCCCCCCcccCCHHHHHHHHHHHHHCCCCEEEEecCCCCCCC---HHHHHHHHHHHHHHC
Confidence 345668999999999999986432 1 2489999999999999999999999998776543 688999999999999
Q ss_pred CCcEEEeecCC-------CCC--ChHHHHHHHHcCcccccc-cccch-HHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCc
Q 017200 207 PNMLIEALVPD-------FRG--NNGCVREVAKSGLNVFAH-NIETV-EELQSAVRDHRANFKQSLDVLMMAKDYVPAGT 275 (375)
Q Consensus 207 p~i~Ie~l~pd-------~~g--~~e~l~~L~~aGldv~~h-nlEtv-~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl 275 (375)
|++.+.++++. -.| +.+.++.|+++|++.+++ ++|+. +++++.+++.+.++++|+++++.|++ .|+
T Consensus 83 ~~i~~~~~s~~e~~~~~~~~g~~~~e~l~~LkeAGl~~i~~~g~E~l~~~~~~~i~~~~~t~~~~l~~i~~a~~---~Gi 159 (309)
T TIGR00423 83 PDVHIHAFSPMEVYFLAKNEGLSIEEVLKRLKKAGLDSMPGTGAEILDDSVRRKICPNKLSSDEWLEVIKTAHR---LGI 159 (309)
T ss_pred CCceEEecCHHHHHHHHHHcCCCHHHHHHHHHHcCCCcCCCCcchhcCHHHHHhhCCCCCCHHHHHHHHHHHHH---cCC
Confidence 99998877651 111 478999999999999986 79976 69999998667899999999999999 589
Q ss_pred eEEEeEEEecCCCHHHHHHHHHHHHHcCCc------EEeeecCCCCCCCCCC-cccc--CCHHHHHHHHHHHHHh
Q 017200 276 LTKTSIMLGCGETPDQVVSTMEKVRAAGVD------VMTFGQYMRPSKRHMP-VSEY--ITPEAFERYRALGMEM 341 (375)
Q Consensus 276 ~tkt~imvGlGET~ee~~etl~~Lrelgvd------~v~i~qYl~P~~~~~~-v~~~--v~pe~~~~l~~~a~~~ 341 (375)
.+++++|+|+|||+||+++++..|++++.+ +||+ +|..+ ++| +... ..+...+.|+.+|..+
T Consensus 160 ~~~s~~iiG~~Et~ed~~~~l~~lr~l~~~~~~f~~fiP~-~f~~~---~t~~l~~~~~~~~~~~e~lr~iA~~R 230 (309)
T TIGR00423 160 PTTATMMFGHVENPEHRVEHLLRIRKIQEKTGGFTEFIPL-PFQPE---NNPYLEGEVRKGASGIDDLKVIAISR 230 (309)
T ss_pred CceeeEEecCCCCHHHHHHHHHHHHhhchhhCCeeeEEee-eecCC---CChhhccCCCCCCCHHHHHHHHHHHH
Confidence 999999999999999999999999999986 4554 44332 333 3322 2345677788877764
No 23
>TIGR03551 F420_cofH 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofH subunit. This enzyme, together with CofG, complete the biosynthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, the chromophore of coenzyme F420. The chromophore is also used in cyanobacteria DNA photolyases.
Probab=99.95 E-value=3.4e-26 Score=227.19 Aligned_cols=233 Identities=18% Similarity=0.266 Sum_probs=183.1
Q ss_pred HHHHHHHHhc-cChhhhhhhcCCCCcccccCCCCCCccEEEE-----eeeCCccCCCCcCCCCCCCCCC---CCCCcchH
Q 017200 92 YVQIKKKLRE-LKLHTVCEEAKCPNLGECWSGGETGTATATI-----MILGDTCTRGCRFCNVKTSRAP---PPPDPDEP 162 (375)
Q Consensus 92 ~~~~~~~l~~-~~L~tvceeA~cpn~~ec~~~~~~~~~tatf-----m~i~d~C~~~C~FC~v~~~r~~---~~ld~eEi 162 (375)
.+++..+|.. .++..+++.|+..+... + |. .++| +.++++|+.+|.||+++...+. ..+++||+
T Consensus 3 ~~e~~~ll~~~~~~~~L~~~A~~ir~~~-~-g~-----~v~~~~~~~i~~T~~C~~~C~FC~~~~~~~~~~~y~ls~eeI 75 (343)
T TIGR03551 3 KEEALELFEARGNLFELFRLADELRRDI-V-GD-----TVTYVVNRNINFTNVCYGGCGFCAFRKRKGDADAYLLSLEEI 75 (343)
T ss_pred HHHHHHHHhCCChHHHHHHHHHHHHHHh-c-CC-----eEEEEeeeccccccccccCCccCCCccCCCCCCcccCCHHHH
Confidence 4667777765 67888999888776543 3 33 6776 3359999999999999864321 24899999
Q ss_pred HHHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCCCcEEEeecCC-------CC--CChHHHHHHHHcCc
Q 017200 163 TNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPD-------FR--GNNGCVREVAKSGL 233 (375)
Q Consensus 163 ~~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p~i~Ie~l~pd-------~~--g~~e~l~~L~~aGl 233 (375)
++.++.+.+.|+++|+|+||+.+++. .+++.++++.|++..|++.+.+++|. -. .+.|.++.|+++|+
T Consensus 76 ~e~~~~~~~~G~~~i~l~gG~~p~~~---~~~~~~i~~~Ik~~~~~i~~~~~t~~ei~~~~~~~g~~~~e~l~~LkeAGl 152 (343)
T TIGR03551 76 AERAAEAWKAGATEVCIQGGIHPDLD---GDFYLDILRAVKEEVPGMHIHAFSPMEVYYGARNSGLSVEEALKRLKEAGL 152 (343)
T ss_pred HHHHHHHHHCCCCEEEEEeCCCCCCC---HHHHHHHHHHHHHHCCCceEEecCHHHHHHHHHHcCCCHHHHHHHHHHhCc
Confidence 99999999999999999998766553 68899999999999899998886541 01 15899999999999
Q ss_pred ccccc-cccch-HHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcCCc------
Q 017200 234 NVFAH-NIETV-EELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVD------ 305 (375)
Q Consensus 234 dv~~h-nlEtv-~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~tkt~imvGlGET~ee~~etl~~Lrelgvd------ 305 (375)
+.+.. +.|+. ++++++|++.+.++++|+++++.+++ .|+.+++++|+|+|||.||+++++..|++++++
T Consensus 153 ~~i~~~~~E~~~~~v~~~i~~~~~~~~~~~~~i~~a~~---~Gi~v~s~~i~G~~Et~ed~~~~l~~lr~l~~~~~~~~~ 229 (343)
T TIGR03551 153 DSMPGTAAEILDDEVRKVICPDKLSTAEWIEIIKTAHK---LGIPTTATIMYGHVETPEHWVDHLLILREIQEETGGFTE 229 (343)
T ss_pred ccccCcchhhcCHHHHHhcCCCCCCHHHHHHHHHHHHH---cCCcccceEEEecCCCHHHHHHHHHHHHHhhHHhCCeeE
Confidence 99973 46765 59999999545699999999999999 589999999999999999999999999999987
Q ss_pred EEeeecCCCCCCCCCCcccc----CCHHHHHHHHHHHHHh
Q 017200 306 VMTFGQYMRPSKRHMPVSEY----ITPEAFERYRALGMEM 341 (375)
Q Consensus 306 ~v~i~qYl~P~~~~~~v~~~----v~pe~~~~l~~~a~~~ 341 (375)
++|+ +|+.| ++|+... ......+.++.+|..+
T Consensus 230 ~iP~-~f~~~---gT~l~~~~~~~~~~~~~~~lr~iAv~R 265 (343)
T TIGR03551 230 FVPL-PFVHY---NAPLYLKGMARPGPTGREDLKVHAIAR 265 (343)
T ss_pred EEec-cccCC---CCccccccCCCCCCCHHHHHHHHHHHH
Confidence 4555 55544 3444321 1124577778777763
No 24
>PRK06256 biotin synthase; Validated
Probab=99.94 E-value=1.2e-25 Score=222.22 Aligned_cols=236 Identities=16% Similarity=0.218 Sum_probs=179.5
Q ss_pred ccHHHHHHHHh--ccChhhhhhhcCCCCcccccCCCCCCccEEEEee-eCCccCCCCcCCCCCCCCC-C----CCCCcch
Q 017200 90 DKYVQIKKKLR--ELKLHTVCEEAKCPNLGECWSGGETGTATATIMI-LGDTCTRGCRFCNVKTSRA-P----PPPDPDE 161 (375)
Q Consensus 90 ~~~~~~~~~l~--~~~L~tvceeA~cpn~~ec~~~~~~~~~tatfm~-i~d~C~~~C~FC~v~~~r~-~----~~ld~eE 161 (375)
-.++++..+|. +.+|..+++.|+-.+.. .+++. -...+++. .+++|+.+|.||+++...+ + ..++++|
T Consensus 20 ~~~~e~~~ll~~~~~~~~~L~~~A~~~r~~-~~g~~---v~~~~i~~~~s~~C~~~C~fC~~~~~~~~~~~~~~~~s~ee 95 (336)
T PRK06256 20 LTKEEALALLEIPDDDLLELLAAAYEVRKH-FCGKK---VKLNTIINAKSGLCPEDCGYCSQSAGSSAPVYRYAWLDIEE 95 (336)
T ss_pred CCHHHHHHHHcCChHHHHHHHHHHHHHHHH-hCCCe---EEEEEeeeccCCCCCCCCccCCCcCCCCCCCceecCCCHHH
Confidence 34677777876 34688888888644432 22321 11123333 3999999999999986421 1 1379999
Q ss_pred HHHHHHHHHhcCCcEEEEEe-eeCCCCCcccHHHHHHHHHHHHHhCCCcEEEeecCCCCCChHHHHHHHHcCcccccccc
Q 017200 162 PTNVAEAIASWGLDYVVITS-VDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHNI 240 (375)
Q Consensus 162 i~~~a~al~~~G~~eIvLTs-gdr~dl~d~G~~~~~~lir~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGldv~~hnl 240 (375)
+++.++.+.+.|+++++|++ |..++..+ .+++.++++.|++. +++.+.+..+.. +.+.++.|+++|++.+.|++
T Consensus 96 I~~~~~~~~~~g~~~~~l~~~g~~p~~~~--~~~~~e~i~~i~~~-~~i~~~~~~g~l--~~e~l~~LkeaG~~~v~~~l 170 (336)
T PRK06256 96 LIEAAKEAIEEGAGTFCIVASGRGPSGKE--VDQVVEAVKAIKEE-TDLEICACLGLL--TEEQAERLKEAGVDRYNHNL 170 (336)
T ss_pred HHHHHHHHHHCCCCEEEEEecCCCCCchH--HHHHHHHHHHHHhc-CCCcEEecCCcC--CHHHHHHHHHhCCCEEecCC
Confidence 99999999999998887765 44343322 56899999999886 667776655544 78999999999999999999
Q ss_pred cchHHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcCCcEEeeecCCCCCCCCC
Q 017200 241 ETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQYMRPSKRHM 320 (375)
Q Consensus 241 Etv~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~tkt~imvGlGET~ee~~etl~~Lrelgvd~v~i~qYl~P~~~~~ 320 (375)
|+++++|+.|+ ++++|++++++++.+++ .|+.+++++|+|+|||++|+.+++..+++++++.+++ .++.|. +++
T Consensus 171 Ets~~~~~~i~-~~~t~~~~i~~i~~a~~---~Gi~v~~~~I~GlgEt~ed~~~~~~~l~~l~~~~v~i-~~l~P~-pGT 244 (336)
T PRK06256 171 ETSRSYFPNVV-TTHTYEDRIDTCEMVKA---AGIEPCSGGIIGMGESLEDRVEHAFFLKELDADSIPI-NFLNPI-PGT 244 (336)
T ss_pred ccCHHHHhhcC-CCCCHHHHHHHHHHHHH---cCCeeccCeEEeCCCCHHHHHHHHHHHHhCCCCEEee-cccccC-CCC
Confidence 99779999999 68899999999999999 5899999999999999999999999999999999998 455663 356
Q ss_pred CccccCCHHHHHHHHHHHHH
Q 017200 321 PVSEYITPEAFERYRALGME 340 (375)
Q Consensus 321 ~v~~~v~pe~~~~l~~~a~~ 340 (375)
|+.....+...+.++.+|..
T Consensus 245 ~l~~~~~~~~~e~l~~ia~~ 264 (336)
T PRK06256 245 PLENHPELTPLECLKTIAIF 264 (336)
T ss_pred CCCCCCCCCHHHHHHHHHHH
Confidence 65543333445555555543
No 25
>PRK09240 thiH thiamine biosynthesis protein ThiH; Reviewed
Probab=99.94 E-value=7e-26 Score=227.37 Aligned_cols=210 Identities=16% Similarity=0.228 Sum_probs=174.3
Q ss_pred cHHHHHHHHhc---cChhhhhhhcCCCCcccccCCCCCCccEEE-E--eeeCCccCCCCcCCCCCCCCCC--CCCCcchH
Q 017200 91 KYVQIKKKLRE---LKLHTVCEEAKCPNLGECWSGGETGTATAT-I--MILGDTCTRGCRFCNVKTSRAP--PPPDPDEP 162 (375)
Q Consensus 91 ~~~~~~~~l~~---~~L~tvceeA~cpn~~ec~~~~~~~~~tat-f--m~i~d~C~~~C~FC~v~~~r~~--~~ld~eEi 162 (375)
+.+++..+|.. ..|..+++.|+-.+... ||+ +++ + +.++|.|+.+|.||+++...+. ..++++|+
T Consensus 37 s~ee~~~Ll~~~~~~~l~~L~~~A~~ir~~~-~G~------~v~l~~~in~Tn~C~~~C~YC~f~~~~~~~~~~ls~eEI 109 (371)
T PRK09240 37 SLEDLMALLSPAAEPYLEEMAQKAQRLTRQR-FGN------TISLYTPLYLSNYCANDCTYCGFSMSNKIKRKTLDEEEI 109 (371)
T ss_pred CHHHHHHHhCCCChhHHHHHHHHHHHHHHHH-cCC------EEEEEeceEEcccccCcCCcCCCCCCCCCccccCCHHHH
Confidence 46778888773 35888888888776653 343 444 2 3459999999999999864322 24899999
Q ss_pred HHHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCCCcEEEeecCCCCCChHHHHHHHHcCcccccccccc
Q 017200 163 TNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIET 242 (375)
Q Consensus 163 ~~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGldv~~hnlEt 242 (375)
++.++.+.+.|+++|+|+||..+...+ .+++.++++.|++.+|.+.+++. .+ +.+.++.|+++|++.|+||+||
T Consensus 110 ~~~a~~~~~~Gv~~i~lvgGe~p~~~~--~e~l~~~i~~Ik~~~p~i~i~~g--~l--t~e~l~~Lk~aGv~r~~i~lET 183 (371)
T PRK09240 110 EREMAAIKKLGFEHILLLTGEHEAKVG--VDYIRRALPIAREYFSSVSIEVQ--PL--SEEEYAELVELGLDGVTVYQET 183 (371)
T ss_pred HHHHHHHHhCCCCEEEEeeCCCCCCCC--HHHHHHHHHHHHHhCCCceeccC--CC--CHHHHHHHHHcCCCEEEEEEec
Confidence 999999999999999999998765443 88999999999998888877653 22 7889999999999999999999
Q ss_pred h-HHHHHHhcC--CCCCHHHHHHHHHHHHHhCCCCce-EEEeEEEecCCCHHHHHHHHHHHHHcCCc------EEeeecC
Q 017200 243 V-EELQSAVRD--HRANFKQSLDVLMMAKDYVPAGTL-TKTSIMLGCGETPDQVVSTMEKVRAAGVD------VMTFGQY 312 (375)
Q Consensus 243 v-~rl~~~mr~--r~~s~~~~l~vl~~ak~~~p~Gl~-tkt~imvGlGET~ee~~etl~~Lrelgvd------~v~i~qY 312 (375)
. +++|+.|++ ++++|++++++++.|++ .|+. +++++|+|+||+.+|+++++..|+++++. .|+| +.
T Consensus 184 ~~~~~~~~i~~~g~~h~~~~rl~~i~~a~~---aG~~~v~~g~i~Glge~~~d~~~~a~~l~~L~~~~~~~~~sv~~-~~ 259 (371)
T PRK09240 184 YNPATYAKHHLRGPKRDFEYRLETPERAGR---AGIRKIGLGALLGLSDWRTDALMTALHLRYLQRKYWQAEYSISF-PR 259 (371)
T ss_pred CCHHHHHHhCcCCCCCCHHHHHHHHHHHHH---cCCCeeceEEEecCCccHHHHHHHHHHHHHHHHhCCCCceeeec-Cc
Confidence 6 699999983 57899999999999999 6885 99999999999999999999999999874 6777 77
Q ss_pred CCCCC
Q 017200 313 MRPSK 317 (375)
Q Consensus 313 l~P~~ 317 (375)
++|..
T Consensus 260 l~P~~ 264 (371)
T PRK09240 260 LRPCT 264 (371)
T ss_pred cccCC
Confidence 88853
No 26
>TIGR03550 F420_cofG 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofG subunit. This model represents either a subunit or a domain, depending on whether or not the genes are fused, of a bifunctional protein that completes the synthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin, or FO. FO is the chromophore of coenzyme F(420), involved in methanogenesis in methanogenic archaea but found in certain other lineages as well. The chromophore also occurs as a cofactor in DNA photolyases in Cyanobacteria.
Probab=99.94 E-value=1e-25 Score=222.15 Aligned_cols=207 Identities=14% Similarity=0.159 Sum_probs=159.8
Q ss_pred EEEEeeeCCccCCCCcCCCCCCCCCCC---CCCcchHHHHHHHHHhcCCcEEEEEeeeCCCCCc-------------ccH
Q 017200 129 TATIMILGDTCTRGCRFCNVKTSRAPP---PPDPDEPTNVAEAIASWGLDYVVITSVDRDDLAD-------------QGS 192 (375)
Q Consensus 129 tatfm~i~d~C~~~C~FC~v~~~r~~~---~ld~eEi~~~a~al~~~G~~eIvLTsgdr~dl~d-------------~G~ 192 (375)
...|+.++|+|+.+|+||+++..++.. .+++||+++.|+.+.+.|+++|+||||.+++..- ...
T Consensus 4 ~n~~i~~tn~C~~~C~fCaf~~~~g~~~~~~l~~eeI~~~a~~~~~~G~~ei~l~~G~~p~~~~~~~~~~l~~~~~~~~~ 83 (322)
T TIGR03550 4 RNVFIPLTRLCRNRCGYCTFRRPPGELEAALLSPEEVLEILRKGAAAGCTEALFTFGEKPEERYPEAREWLAEMGYDSTL 83 (322)
T ss_pred ceEEeccccCcCCCCccCCccccCCCcccccCCHHHHHHHHHHHHHCCCCEEEEecCCCccccHHHHHHHHHhcCCccHH
Confidence 456788999999999999999865432 4899999999999999999999999998877640 113
Q ss_pred HHHHHHHHHHHHhCCCcEEEeecCCCCCChHHHHHHHHcCcccccccccchH-HHHHHhcC---CCCCHHHHHHHHHHHH
Q 017200 193 GHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETVE-ELQSAVRD---HRANFKQSLDVLMMAK 268 (375)
Q Consensus 193 ~~~~~lir~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGldv~~hnlEtv~-rl~~~mr~---r~~s~~~~l~vl~~ak 268 (375)
+++.++++.|++.. ++...+....+ +.+.++.|+++|++ +.+++||+. ++++.++. ++.++++|+++++.|+
T Consensus 84 ~~~~~~~~~i~~e~-~~~~~~~~g~l--t~e~l~~Lk~aG~~-~~~~~Et~~~~l~~~~~~~~~p~k~~~~~l~~i~~a~ 159 (322)
T TIGR03550 84 EYLRELCELALEET-GLLPHTNPGVM--SRDELARLKPVNAS-MGLMLETTSERLCKGEAHYGSPGKDPAVRLETIEDAG 159 (322)
T ss_pred HHHHHHHHHHHHhc-CCccccCCCCC--CHHHHHHHHhhCCC-CCcchhhhccccccccccCCCCCCCHHHHHHHHHHHH
Confidence 78889999998653 23333333333 78999999999987 589999875 76665542 3457899999999999
Q ss_pred HhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcC-----CcEEeeecCCCCCCCCCCccccCCHHHHHHHHHHHHHhhh
Q 017200 269 DYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAG-----VDVMTFGQYMRPSKRHMPVSEYITPEAFERYRALGMEMGF 343 (375)
Q Consensus 269 ~~~p~Gl~tkt~imvGlGET~ee~~etl~~Lrelg-----vd~v~i~qYl~P~~~~~~v~~~v~pe~~~~l~~~a~~~gf 343 (375)
+ .|+.++++||+|+|||++|+++++..|++++ ++.+.+..| +|. +++|+.....++..+.++.+|..+=+
T Consensus 160 ~---~Gi~~~s~~i~G~gEt~ed~~~~l~~lr~Lq~~~~g~~~~i~~~f-~P~-~gTpl~~~~~~s~~e~lr~iAv~Rl~ 234 (322)
T TIGR03550 160 R---LKIPFTTGILIGIGETREERAESLLAIRELHERYGHIQEVIVQNF-RAK-PGTPMENHPEPSLEEMLRTVAVARLI 234 (322)
T ss_pred H---cCCCccceeeEeCCCCHHHHHHHHHHHHHHHHHcCCCeEEecCcc-ccC-CCCCccCCCCCCHHHHHHHHHHHHHH
Confidence 9 5899999999999999999999999999998 555555455 673 36666544344567777777776444
Q ss_pred h
Q 017200 344 R 344 (375)
Q Consensus 344 ~ 344 (375)
+
T Consensus 235 l 235 (322)
T TIGR03550 235 L 235 (322)
T ss_pred c
Confidence 3
No 27
>PRK07094 biotin synthase; Provisional
Probab=99.94 E-value=3.9e-25 Score=217.19 Aligned_cols=217 Identities=15% Similarity=0.259 Sum_probs=169.5
Q ss_pred HHHHHHHhccChh---hhhhhcCCCCcccccCCCCCCccEEEEeeeCCccCCCCcCCCCCCCCCC---CCCCcchHHHHH
Q 017200 93 VQIKKKLRELKLH---TVCEEAKCPNLGECWSGGETGTATATIMILGDTCTRGCRFCNVKTSRAP---PPPDPDEPTNVA 166 (375)
Q Consensus 93 ~~~~~~l~~~~L~---tvceeA~cpn~~ec~~~~~~~~~tatfm~i~d~C~~~C~FC~v~~~r~~---~~ld~eEi~~~a 166 (375)
+++..+|...+.. .+.+.|+-.+.. .+|+. -....++.++++|+.+|.||+++...+. ..++++++++.+
T Consensus 4 ~e~~~ll~~~~~~~~~~L~~~A~~~r~~-~~g~~---v~~~~~i~~s~gC~~~C~fC~~~~~~~~~~r~~ls~eei~~~~ 79 (323)
T PRK07094 4 DEILELLSNDDEEELKYLFKAADEVRKK-YVGDE---VHLRGLIEFSNYCRNNCLYCGLRRDNKNIERYRLSPEEILECA 79 (323)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHH-hCCCE---EEEEEEEEECCCCCCCCEeCCcccCCCCCcCcCCCHHHHHHHH
Confidence 4556666543322 355556544443 23331 1123346679999999999999865322 136899999999
Q ss_pred HHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCCCcEEEeecCCCCCChHHHHHHHHcCcccccccccch-HH
Q 017200 167 EAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETV-EE 245 (375)
Q Consensus 167 ~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGldv~~hnlEtv-~r 245 (375)
+.+.+.|+++|+|+||+.+.+. .+++.++++.|++. +++.+.+..... +.+.++.|+++|++.+.+++|+. ++
T Consensus 80 ~~~~~~g~~~i~l~gG~~~~~~---~~~l~~l~~~i~~~-~~l~i~~~~g~~--~~e~l~~Lk~aG~~~v~~glEs~~~~ 153 (323)
T PRK07094 80 KKAYELGYRTIVLQSGEDPYYT---DEKIADIIKEIKKE-LDVAITLSLGER--SYEEYKAWKEAGADRYLLRHETADKE 153 (323)
T ss_pred HHHHHCCCCEEEEecCCCCCCC---HHHHHHHHHHHHcc-CCceEEEecCCC--CHHHHHHHHHcCCCEEEeccccCCHH
Confidence 9999999999999999754433 57899999999886 567776544443 68999999999999999999987 59
Q ss_pred HHHHhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEec-CCCHHHHHHHHHHHHHcCCcEEeeecCCCCCCCCCCccc
Q 017200 246 LQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGC-GETPDQVVSTMEKVRAAGVDVMTFGQYMRPSKRHMPVSE 324 (375)
Q Consensus 246 l~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~tkt~imvGl-GET~ee~~etl~~Lrelgvd~v~i~qYl~P~~~~~~v~~ 324 (375)
+++.++ ++++++++++.++.+++ .|+.+++++|+|+ |||.+|+.++++.+++++++.+++..|. |. .++|+..
T Consensus 154 ~~~~i~-~~~s~~~~~~~i~~l~~---~Gi~v~~~~iiGlpget~ed~~~~l~~l~~l~~~~v~~~~~~-P~-pgTpl~~ 227 (323)
T PRK07094 154 LYAKLH-PGMSFENRIACLKDLKE---LGYEVGSGFMVGLPGQTLEDLADDILFLKELDLDMIGIGPFI-PH-PDTPLKD 227 (323)
T ss_pred HHHHhC-CCCCHHHHHHHHHHHHH---cCCeecceEEEECCCCCHHHHHHHHHHHHhCCCCeeeeeccc-cC-CCCCccc
Confidence 999999 58999999999999999 5899999999999 9999999999999999999999996654 52 3566554
Q ss_pred c
Q 017200 325 Y 325 (375)
Q Consensus 325 ~ 325 (375)
.
T Consensus 228 ~ 228 (323)
T PRK07094 228 E 228 (323)
T ss_pred C
Confidence 3
No 28
>PRK09234 fbiC FO synthase; Reviewed
Probab=99.93 E-value=1.2e-24 Score=236.73 Aligned_cols=240 Identities=18% Similarity=0.152 Sum_probs=179.2
Q ss_pred HHHHHHHH--hccChhhhhhhcCCCCcccccCC-CCCCccEEEE-----eeeCCccCCCCcCCCCCCCCCC-C--CCCcc
Q 017200 92 YVQIKKKL--RELKLHTVCEEAKCPNLGECWSG-GETGTATATI-----MILGDTCTRGCRFCNVKTSRAP-P--PPDPD 160 (375)
Q Consensus 92 ~~~~~~~l--~~~~L~tvceeA~cpn~~ec~~~-~~~~~~tatf-----m~i~d~C~~~C~FC~v~~~r~~-~--~ld~e 160 (375)
.++...++ ++.+|..+++.|+-.+... +|+ +.. .++|| +.++|.|..+|.||+|++..+. . -+++|
T Consensus 29 ~eEa~~Ll~~~~~dl~~L~~~A~~vR~~~-~G~~~~~--~~Vty~~n~~In~Tn~C~~~C~YCaF~~~~~~~~~~~ls~e 105 (843)
T PRK09234 29 VDEAAVLLTARGDDLADLCASAARVRDAG-LGAAGRP--GVVTYSRKVFIPLTRLCRDRCHYCTFATVPGKLEAAYLSPD 105 (843)
T ss_pred HHHHHHHhcCCCccHHHHHHHHHHHHHHH-cCCcccC--ceEEEEeEEEecCCCCCCCCCCcCCCccCCCCCccccCCHH
Confidence 45555555 3456777888777655532 332 001 24544 4579999999999999875322 2 38999
Q ss_pred hHHHHHHHHHhcCCcEEEEEeeeCCCCC---------cc----cHHHHHHHHHHHHHhCCCcEEEeecCCCCCChHHHHH
Q 017200 161 EPTNVAEAIASWGLDYVVITSVDRDDLA---------DQ----GSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVRE 227 (375)
Q Consensus 161 Ei~~~a~al~~~G~~eIvLTsgdr~dl~---------d~----G~~~~~~lir~Ik~~~p~i~Ie~l~pd~~g~~e~l~~ 227 (375)
||++.++++++.|+++++||||++++.. .. -.+++.++++.|++..+ +..++..+.+ +.+.++.
T Consensus 106 EIl~~a~~~~~~G~~e~l~t~G~~P~~~~~~~~~~l~~~gy~~~~ey~~~~~~~ik~~~g-l~p~i~~G~l--s~~E~~~ 182 (843)
T PRK09234 106 EVLDIARAGAAAGCKEALFTLGDRPEDRWPEAREWLDERGYDSTLDYVRAMAIRVLEETG-LLPHLNPGVM--SWSELAR 182 (843)
T ss_pred HHHHHHHHHHHCCCCEEEEecCCCCccccccccccccccccccHHHHHHHHHHHHHHhcC-CCceeeeCCC--CHHHHHH
Confidence 9999999999999999999999987753 11 15889999999998632 3333333444 7889999
Q ss_pred HHHcCcccccccccc-hHHHHHH------hcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHH
Q 017200 228 VAKSGLNVFAHNIET-VEELQSA------VRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVR 300 (375)
Q Consensus 228 L~~aGldv~~hnlEt-v~rl~~~------mr~r~~s~~~~l~vl~~ak~~~p~Gl~tkt~imvGlGET~ee~~etl~~Lr 300 (375)
|+++|++ +.+++|| ++++|+. ++ ++..+++||++++.|++ .|+.++|+||+|+|||.+|++++|..||
T Consensus 183 Lk~~g~s-~gl~lEt~~~~l~~~~g~~h~~~-P~K~~~~RL~ti~~A~~---lGi~~tsG~L~GiGEt~edRve~L~~LR 257 (843)
T PRK09234 183 LKPVAPS-MGMMLETTSRRLFEEKGGPHYGS-PDKDPAVRLRVLEDAGR---LSVPFTTGILIGIGETLAERAESLFAIR 257 (843)
T ss_pred HHHhcCc-CCCCHHHHHHHHHHhhcccccCC-CCCCHHHHHHHHHHHHH---cCCCccceEEEECCCCHHHHHHHHHHHH
Confidence 9999997 7899998 5688754 33 46789999999999999 6899999999999999999999999999
Q ss_pred HcC-----CcEEeeecCCCCCCCCCCccccCCHHHHHHHHHHHHHhhhh
Q 017200 301 AAG-----VDVMTFGQYMRPSKRHMPVSEYITPEAFERYRALGMEMGFR 344 (375)
Q Consensus 301 elg-----vd~v~i~qYl~P~~~~~~v~~~v~pe~~~~l~~~a~~~gf~ 344 (375)
+++ ++.+.+ |.|+| ..++|+.....+...+.++.+|..+=++
T Consensus 258 ~Lq~~~g~~~evi~-~~F~p-~~gT~l~~~~~~s~~e~Lr~iAvaRliL 304 (843)
T PRK09234 258 KLHREYGHIQEVIV-QNFRA-KPDTAMAGVPDAGLEELLATIAVARLVL 304 (843)
T ss_pred HhhHhhCCCcEEee-ccccc-CCCCCCCCCCCCCHHHHHHHHHHHHHhC
Confidence 995 666777 44557 3466665544466677788888775443
No 29
>TIGR02351 thiH thiazole biosynthesis protein ThiH. Members this protein family are the ThiH protein of thiamine biosynthesis, a homolog of the BioB protein of biotin biosynthesis. Genes for the this protein generally are found in operons with other thiamin biosynthesis genes.
Probab=99.93 E-value=2.2e-24 Score=216.16 Aligned_cols=223 Identities=17% Similarity=0.241 Sum_probs=177.4
Q ss_pred cHHHHHHHHhcc---ChhhhhhhcCCCCcccccCCCCCCccEEE-E--eeeCCccCCCCcCCCCCCCCCC--CCCCcchH
Q 017200 91 KYVQIKKKLREL---KLHTVCEEAKCPNLGECWSGGETGTATAT-I--MILGDTCTRGCRFCNVKTSRAP--PPPDPDEP 162 (375)
Q Consensus 91 ~~~~~~~~l~~~---~L~tvceeA~cpn~~ec~~~~~~~~~tat-f--m~i~d~C~~~C~FC~v~~~r~~--~~ld~eEi 162 (375)
..++...+|... .|..+++.|+-.+.. .+|+ +++ + +.++|.|+++|.||+++..... ..++++|+
T Consensus 36 s~~e~~~Ll~~~~~~~l~~L~~~A~~ir~~-~~G~------~v~l~~~i~~Tn~C~~~C~yC~~s~~~~~~~~~Ls~eEI 108 (366)
T TIGR02351 36 SLEDFLALLSPAAEPYLEEMAQKAKKLTRK-RFGN------TISLFTPLYLSNYCSNKCVYCGFSMSNKIKRKKLNEEEI 108 (366)
T ss_pred CHHHHHHHhCCCchHHHHHHHHHHHHHHHH-HcCC------EEEEEeeeeECccccCCCCcCCCCCCCCCccCcCCHHHH
Confidence 367777777643 488888888765554 3443 344 3 3469999999999999864221 23899999
Q ss_pred HHHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCCCcEEEeecCCCCCChHHHHHHHHcCcccccccccc
Q 017200 163 TNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIET 242 (375)
Q Consensus 163 ~~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGldv~~hnlEt 242 (375)
.+.++.+.+.|+++|+|+||..+...+ .+++.++++.|++.+|.+.|++. | + +.+.++.|+++|++.+.||+||
T Consensus 109 ~~~a~~~~~~Gv~~i~lvgGe~p~~~~--~e~l~eii~~Ik~~~p~i~Iei~-~-l--t~e~~~~Lk~aGv~r~~i~lET 182 (366)
T TIGR02351 109 EREIEAIKKSGFKEILLVTGESEKAAG--VEYIAEAIKLAREYFSSLAIEVQ-P-L--NEEEYKKLVEAGLDGVTVYQET 182 (366)
T ss_pred HHHHHHHHhCCCCEEEEeeCCCCCCCC--HHHHHHHHHHHHHhCCccccccc-c-C--CHHHHHHHHHcCCCEEEEEeec
Confidence 999999999999999999987766544 78999999999998888877753 2 3 7899999999999999999999
Q ss_pred h-HHHHHHhcC--CCCCHHHHHHHHHHHHHhCCCCce-EEEeEEEecCCCHHHHHHHHHHHHHcCC------cEEeeecC
Q 017200 243 V-EELQSAVRD--HRANFKQSLDVLMMAKDYVPAGTL-TKTSIMLGCGETPDQVVSTMEKVRAAGV------DVMTFGQY 312 (375)
Q Consensus 243 v-~rl~~~mr~--r~~s~~~~l~vl~~ak~~~p~Gl~-tkt~imvGlGET~ee~~etl~~Lrelgv------d~v~i~qY 312 (375)
. +++|+.|++ ++++|+++++.++.|++ .|+. +++++|+|+||+.+|.++++..|+++++ ..|+| +.
T Consensus 183 ~~~~~y~~i~~~g~~h~~~~rl~~i~~a~~---aG~~~v~~g~i~Gl~e~~~d~~~~a~~l~~L~~~~~~~~~sv~~-~~ 258 (366)
T TIGR02351 183 YNEKKYKKHHLAGKKKDFRYRLNTPERAAK---AGMRKIGIGALLGLDDWRTDAFFTAYHLRYLQKKYWKTEISISV-PR 258 (366)
T ss_pred CCHHHHHhcCcCCCCCCHHHHHHHHHHHHH---cCCCeeceeEEEeCchhHHHHHHHHHHHHHHHHHcCCCCccccc-cc
Confidence 7 699999983 68899999999999999 6887 8999999999999999999999999887 56777 67
Q ss_pred CCCCCCCCCccccCCHHH
Q 017200 313 MRPSKRHMPVSEYITPEA 330 (375)
Q Consensus 313 l~P~~~~~~v~~~v~pe~ 330 (375)
++|.+..+.-...+++.+
T Consensus 259 l~P~~g~~~~~~~l~~~~ 276 (366)
T TIGR02351 259 LRPCTNGLKPKVIVTDRE 276 (366)
T ss_pred cccCCCCCCCCCcCCHHH
Confidence 888643222223344543
No 30
>PRK14332 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=99.92 E-value=1.2e-23 Score=216.11 Aligned_cols=214 Identities=17% Similarity=0.246 Sum_probs=171.9
Q ss_pred EEEEeeeCCccCCCCcCCCCCCCCCC-CCCCcchHHHHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCC
Q 017200 129 TATIMILGDTCTRGCRFCNVKTSRAP-PPPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKP 207 (375)
Q Consensus 129 tatfm~i~d~C~~~C~FC~v~~~r~~-~~ld~eEi~~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p 207 (375)
..+|+.+++||+++|+||+++..+++ .+.++++++++++.+.+.|+++|+|+|++-..+... ...|++++++|.+...
T Consensus 154 ~~a~l~isrGC~~~CsFC~ip~~rG~~rsr~~e~Iv~Ei~~l~~~G~kei~l~~~~~~~y~~~-~~~l~~Ll~~l~~~~~ 232 (449)
T PRK14332 154 IQAFVTIMRGCNNFCTFCVVPYTRGRERSRDPKSIVREIQDLQEKGIRQVTLLGQNVNSYKEQ-STDFAGLIQMLLDETT 232 (449)
T ss_pred ceEEEEecCCcCCCCCCCCcccccCCcccCCHHHHHHHHHHHHHCCCeEEEEecccCCcccCC-cccHHHHHHHHhcCCC
Confidence 57899999999999999999987654 358999999999999999999999999986655432 2458889888865432
Q ss_pred --CcEEEeecCCCCCChHHHHHHHHcC--cccccccccc-hHHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEE
Q 017200 208 --NMLIEALVPDFRGNNGCVREVAKSG--LNVFAHNIET-VEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIM 282 (375)
Q Consensus 208 --~i~Ie~l~pd~~g~~e~l~~L~~aG--ldv~~hnlEt-v~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~tkt~im 282 (375)
.+++..+.|+.. +++.++.++++| +..+..++|+ ++++++.|+ |+++.+++++.++.+++..|. +.+.++||
T Consensus 233 ~~~ir~~~~~p~~~-~~ell~~m~~~~~~~~~l~lgvQSgsd~vLk~m~-R~~t~~~~~~~i~~lr~~~p~-i~i~td~I 309 (449)
T PRK14332 233 IERIRFTSPHPKDF-PDHLLSLMAKNPRFCPNIHLPLQAGNTRVLEEMK-RSYSKEEFLDVVKEIRNIVPD-VGITTDII 309 (449)
T ss_pred cceEEEECCCcccC-CHHHHHHHHhCCCccceEEECCCcCCHHHHHhhC-CCCCHHHHHHHHHHHHHhCCC-CEEEEEEE
Confidence 234434445433 788899999988 6677778896 569999999 899999999999999998775 88899999
Q ss_pred Eec-CCCHHHHHHHHHHHHHcCCcEEeeecCC-CCCCCCC-C----ccccCCHHHHHHHHHHHHHhhhhhh
Q 017200 283 LGC-GETPDQVVSTMEKVRAAGVDVMTFGQYM-RPSKRHM-P----VSEYITPEAFERYRALGMEMGFRYV 346 (375)
Q Consensus 283 vGl-GET~ee~~etl~~Lrelgvd~v~i~qYl-~P~~~~~-~----v~~~v~pe~~~~l~~~a~~~gf~~~ 346 (375)
+|| |||++|+.++++++++++++.++++.|. +|++... . +.+.+..++.++|.+++.++.+.+.
T Consensus 310 vGfPgET~edf~~tl~~v~~l~~~~~~~f~ys~~~GT~a~~~~~~~v~~~~~~~R~~~l~~~~~~~~~~~~ 380 (449)
T PRK14332 310 VGFPNETEEEFEDTLAVVREVQFDMAFMFKYSEREGTMAKRKLPDNVPEEVKSARLTKLVDLQTSISHEQN 380 (449)
T ss_pred eeCCCCCHHHHHHHHHHHHhCCCCEEEEEEecCCCCChhHHhCcCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999 9999999999999999999999999996 5644332 1 3333445678888888888777654
No 31
>PRK14340 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=99.92 E-value=1.1e-23 Score=216.02 Aligned_cols=215 Identities=15% Similarity=0.249 Sum_probs=173.7
Q ss_pred EEEEeeeCCccCCCCcCCCCCCCCCCC-CCCcchHHHHHHHHHhcCCcEEEEEeeeCCCCCc-ccHHHHHHHHHHHHHhC
Q 017200 129 TATIMILGDTCTRGCRFCNVKTSRAPP-PPDPDEPTNVAEAIASWGLDYVVITSVDRDDLAD-QGSGHFAQTVRKLKELK 206 (375)
Q Consensus 129 tatfm~i~d~C~~~C~FC~v~~~r~~~-~ld~eEi~~~a~al~~~G~~eIvLTsgdr~dl~d-~G~~~~~~lir~Ik~~~ 206 (375)
+..|+.+++||+.+|+||+++..++.. +.++++++++++.+.+.|+++|+|+|++-..+.| .+...+.++++.|.+..
T Consensus 149 ~~a~l~isrGC~~~CsFC~ip~~rG~~rsr~~e~Vv~Ei~~l~~~G~~ei~l~~~~~~~y~d~~~~~~l~~Ll~~l~~~~ 228 (445)
T PRK14340 149 ISAFVPVMRGCNNMCAFCVVPFTRGRERSHPFASVLDEVRALAEAGYREITLLGQNVNSYSDPEAGADFAGLLDAVSRAA 228 (445)
T ss_pred cEEEEEeccCCCCCCCCCCcccccCCCcCCCHHHHHHHHHHHHHCCCeEEEEeecccchhhccCCCchHHHHHHHHhhcC
Confidence 678999999999999999999776543 5899999999999999999999999998554433 12245889999987655
Q ss_pred CCcEEE--eecCCCCCChHHHHHHHHc--Ccccccccccc-hHHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeE
Q 017200 207 PNMLIE--ALVPDFRGNNGCVREVAKS--GLNVFAHNIET-VEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSI 281 (375)
Q Consensus 207 p~i~Ie--~l~pd~~g~~e~l~~L~~a--Gldv~~hnlEt-v~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~tkt~i 281 (375)
+..+|. ...|+.. +++.++.++++ |+..+..++|+ ++++++.|+ |+++.+++++.++.+++..|+ +.+.++|
T Consensus 229 ~~~rir~~~~~p~~l-~~ell~~~~~~~~g~~~l~iglQSgsd~vLk~m~-R~~t~~~~~~~v~~lr~~~pg-i~i~td~ 305 (445)
T PRK14340 229 PEMRIRFTTSHPKDI-SESLVRTIAARPNICNHIHLPVQSGSSRMLRRMN-RGHTIEEYLEKIALIRSAIPG-VTLSTDL 305 (445)
T ss_pred CCcEEEEccCChhhc-CHHHHHHHHhCCCCCCeEEECCCcCCHHHHHhcC-CCCCHHHHHHHHHHHHHhCCC-CEEeccE
Confidence 555554 4556543 68899999886 67888888996 569999999 899999999999999998764 9999999
Q ss_pred EEec-CCCHHHHHHHHHHHHHcCCcEEeeecCC-CCCCCCCC-ccccCC----HHHHHHHHHHHHHhhhhhh
Q 017200 282 MLGC-GETPDQVVSTMEKVRAAGVDVMTFGQYM-RPSKRHMP-VSEYIT----PEAFERYRALGMEMGFRYV 346 (375)
Q Consensus 282 mvGl-GET~ee~~etl~~Lrelgvd~v~i~qYl-~P~~~~~~-v~~~v~----pe~~~~l~~~a~~~gf~~~ 346 (375)
|+|| |||++++.++++++++++++.++++.|. +|++.... +.+.|. .++.++|.+++.++...+.
T Consensus 306 IvGfPgET~edf~~tl~~~~~~~~~~~~~f~~sp~pGT~~~~~~~~~v~~~~~~~R~~~l~~l~~~~~~~~~ 377 (445)
T PRK14340 306 IAGFCGETEEDHRATLSLMEEVRFDSAFMFYYSVRPGTLAARTLPDDVPEEVKKRRLQEIIDLQNGISAELF 377 (445)
T ss_pred EEECCCCCHHHHHHHHHHHHhcCCCEEeeEEecCCCCChhhhhCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999 9999999999999999999999998885 56443221 223343 5678888888888766554
No 32
>PRK14327 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=99.92 E-value=1.8e-23 Score=217.36 Aligned_cols=216 Identities=17% Similarity=0.255 Sum_probs=173.4
Q ss_pred cEEEEeeeCCccCCCCcCCCCCCCCCCC-CCCcchHHHHHHHHHhcCCcEEEEEeeeCCCCC-cc-c-HHHHHHHHHHHH
Q 017200 128 ATATIMILGDTCTRGCRFCNVKTSRAPP-PPDPDEPTNVAEAIASWGLDYVVITSVDRDDLA-DQ-G-SGHFAQTVRKLK 203 (375)
Q Consensus 128 ~tatfm~i~d~C~~~C~FC~v~~~r~~~-~ld~eEi~~~a~al~~~G~~eIvLTsgdr~dl~-d~-G-~~~~~~lir~Ik 203 (375)
.+.+|+.+++||+++|+||+++..++.. +.++++++++++.+.+.|+++|.|+|++-..+. |. + ...|.++++.|.
T Consensus 211 ~~~a~v~I~~GC~~~CsFC~vp~~rG~~Rsr~~e~Ii~Ei~~l~~~G~keI~L~g~n~~~yg~d~~~~~~~l~~Ll~~I~ 290 (509)
T PRK14327 211 NIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQEVRHLARQGYKEITLLGQNVNAYGKDFEDIEYGLGDLMDEIR 290 (509)
T ss_pred CeEEEEEecCCCCCCCcCCcccccCCCCeeCCHHHHHHHHHHHHHCCCcEEEEEeeccccCcccccccchHHHHHHHHHH
Confidence 3789999999999999999999766543 589999999999999999999999999754442 11 1 134788888887
Q ss_pred Hh-CCCcEEEeecCCCCCChHHHHHHHHcC--cccccccccc-hHHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCceEEE
Q 017200 204 EL-KPNMLIEALVPDFRGNNGCVREVAKSG--LNVFAHNIET-VEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKT 279 (375)
Q Consensus 204 ~~-~p~i~Ie~l~pd~~g~~e~l~~L~~aG--ldv~~hnlEt-v~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~tkt 279 (375)
+. .+.+++..+.|+.. +++.++.++++| +..+..++|+ ++++++.|+ |+++.+++++.++.+++.+|. +.+.+
T Consensus 291 ~~~i~~ir~~s~~P~~i-~deli~~m~~~g~~~~~l~lgvQSgsd~vLk~M~-R~~t~e~~~~~v~~lr~~~p~-i~i~t 367 (509)
T PRK14327 291 KIDIPRVRFTTSHPRDF-DDHLIEVLAKGGNLVEHIHLPVQSGSTEVLKIMA-RKYTRESYLELVRKIKEAIPN-VALTT 367 (509)
T ss_pred hCCCceEEEeecCcccC-CHHHHHHHHhcCCccceEEeccCCCCHHHHHhcC-CCCCHHHHHHHHHHHHHhCCC-cEEee
Confidence 64 23455555667543 789999999998 4567788996 569999999 899999999999999998775 88999
Q ss_pred eEEEec-CCCHHHHHHHHHHHHHcCCcEEeeecCC-CCCCCCCC----ccccCCHHHHHHHHHHHHHhhhhhh
Q 017200 280 SIMLGC-GETPDQVVSTMEKVRAAGVDVMTFGQYM-RPSKRHMP----VSEYITPEAFERYRALGMEMGFRYV 346 (375)
Q Consensus 280 ~imvGl-GET~ee~~etl~~Lrelgvd~v~i~qYl-~P~~~~~~----v~~~v~pe~~~~l~~~a~~~gf~~~ 346 (375)
+||+|| |||+|++.++++++++++++.++++.|. +|++.... |...+..+++++|.+++.++...+.
T Consensus 368 diIvGfPgET~edf~~Tl~~v~~l~~d~~~~f~ysprpGT~a~~~~~~vp~~vk~~R~~~l~~l~~~~~~~~~ 440 (509)
T PRK14327 368 DIIVGFPNETDEQFEETLSLYREVGFDHAYTFIYSPREGTPAAKMKDNVPMEVKKERLQRLNALVNEYSAKKM 440 (509)
T ss_pred eEEEeCCCCCHHHHHHHHHHHHHcCCCeEEEeeeeCCCCCchHhCcCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999 9999999999999999999999998885 56443322 3333445688899888887765443
No 33
>PRK14339 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=99.92 E-value=2e-23 Score=212.70 Aligned_cols=215 Identities=18% Similarity=0.243 Sum_probs=171.3
Q ss_pred cEEEEeeeCCccCCCCcCCCCCCCCCC-CCCCcchHHHHHHHHHhcCCcEEEEEeeeCCCCC-c----ccHHHHHHHHHH
Q 017200 128 ATATIMILGDTCTRGCRFCNVKTSRAP-PPPDPDEPTNVAEAIASWGLDYVVITSVDRDDLA-D----QGSGHFAQTVRK 201 (375)
Q Consensus 128 ~tatfm~i~d~C~~~C~FC~v~~~r~~-~~ld~eEi~~~a~al~~~G~~eIvLTsgdr~dl~-d----~G~~~~~~lir~ 201 (375)
.+..|+.+++||+++|+||+++..+++ .+.++++++++++.+.+.|+++|+|+|.+-..+. | .+...|.++++.
T Consensus 126 ~~~a~i~isrGC~~~CsFC~ip~~rG~~~sr~~e~I~~Ei~~l~~~G~keI~l~~~~~~~yg~d~~~~~~~~~l~~Ll~~ 205 (420)
T PRK14339 126 PYKSLVNISIGCDKKCTYCIVPHTRGKEISIPMDLILKEAEKAVNNGAKEIFLLGQNVNNYGKRFSSEHEKVDFSDLLDK 205 (420)
T ss_pred CeEEEEEecCCCCCCCCcCCcccccCCCCCCCHHHHHHHHHHHHHCCCcEEEEeeeccccccCCCcCCcccccHHHHHHH
Confidence 378999999999999999999987654 3589999999999999999999999999854432 1 012348888888
Q ss_pred HHHhCCC---cEEEeecCCCCCChHHHHHHHHc--Ccccccccccc-hHHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCc
Q 017200 202 LKELKPN---MLIEALVPDFRGNNGCVREVAKS--GLNVFAHNIET-VEELQSAVRDHRANFKQSLDVLMMAKDYVPAGT 275 (375)
Q Consensus 202 Ik~~~p~---i~Ie~l~pd~~g~~e~l~~L~~a--Gldv~~hnlEt-v~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl 275 (375)
|.+. ++ +++..+.|+.. +++.++.++++ |+..+..++|+ ++++++.|+ |+++.+++++.++.+++..|. +
T Consensus 206 l~~~-~g~~~ir~~s~~p~~~-~~ell~~~~~~~~~~~~l~iglQSgsd~vLk~M~-R~~t~~~~~~~v~~lr~~~p~-i 281 (420)
T PRK14339 206 LSEI-EGLERIRFTSPHPLHM-DDKFLEEFAKNPKICKSIHMPLQSGSSEILKAMK-RGYTKEWFLNRAEKLRALVPE-V 281 (420)
T ss_pred HhcC-CCccEEEECCCChhhc-CHHHHHHHHcCCCccCceEeCCccCCHHHHHhcc-CCCCHHHHHHHHHHHHHHCCC-C
Confidence 8653 33 34433455433 78899999887 46777888996 579999999 899999999999999998775 8
Q ss_pred eEEEeEEEec-CCCHHHHHHHHHHHHHcCCcEEeeecCC-CCCCCCCC----ccccCCHHHHHHHHHHHHHhhhhhh
Q 017200 276 LTKTSIMLGC-GETPDQVVSTMEKVRAAGVDVMTFGQYM-RPSKRHMP----VSEYITPEAFERYRALGMEMGFRYV 346 (375)
Q Consensus 276 ~tkt~imvGl-GET~ee~~etl~~Lrelgvd~v~i~qYl-~P~~~~~~----v~~~v~pe~~~~l~~~a~~~gf~~~ 346 (375)
.+.+++|+|| |||++|+.++++++++++++.++++.|. +|++.... |...+..++.++|.+++.++.+.+.
T Consensus 282 ~i~~d~IvGfPgETeedf~~Tl~fl~~l~~~~~~~f~~sp~pGT~a~~~~~~v~~~~k~~R~~~l~~~~~~~~~~~~ 358 (420)
T PRK14339 282 SISTDIIVGFPGESDKDFEDTMDVLEKVRFEQIFSFKYSPRPLTEAAAWKNQVDEEVASERLERLQNRHKEILDEIA 358 (420)
T ss_pred EEEEEEEEECCCCCHHHHHHHHHHHHhcCCCEEeeEecCCCCCCchhhCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999 9999999999999999999999998885 55443222 3334456678888888888776654
No 34
>PRK09613 thiH thiamine biosynthesis protein ThiH; Reviewed
Probab=99.91 E-value=7.5e-23 Score=210.41 Aligned_cols=231 Identities=12% Similarity=0.223 Sum_probs=179.1
Q ss_pred CccHHHHHHHHhcc---ChhhhhhhcCCCCcccccCCCCCCccEEEE--eeeCCccCCCCcCCCCCCCCC-CC--CCCcc
Q 017200 89 GDKYVQIKKKLREL---KLHTVCEEAKCPNLGECWSGGETGTATATI--MILGDTCTRGCRFCNVKTSRA-PP--PPDPD 160 (375)
Q Consensus 89 ~~~~~~~~~~l~~~---~L~tvceeA~cpn~~ec~~~~~~~~~tatf--m~i~d~C~~~C~FC~v~~~r~-~~--~ld~e 160 (375)
+-+.+++..+|... .|..+.+.|+-.+.. .||+. ...| +.++|.|.++|.||+|+.... .. .+++|
T Consensus 45 ~Ls~eEal~LL~~~~~~~le~L~~~A~~ir~~-~~Gn~-----I~lfapLyiSN~C~n~C~YCgfs~~n~~i~r~~Ls~E 118 (469)
T PRK09613 45 GLSPEEAAVLLNVEDPELLEEIFEAAREIKEK-IYGNR-----IVLFAPLYISNYCVNNCVYCGFRRSNKEIKRKKLTQE 118 (469)
T ss_pred CCCHHHHHHHHcCCChhHHHHHHHHHHHHHHH-HcCCE-----EEEEEeccccCCCCCCCccCCCccCCCCCCceECCHH
Confidence 35578888888754 377788888765553 34543 3444 446999999999999997543 22 38999
Q ss_pred hHHHHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCC---Cc-EEEeecCCCCCChHHHHHHHHcCcccc
Q 017200 161 EPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKP---NM-LIEALVPDFRGNNGCVREVAKSGLNVF 236 (375)
Q Consensus 161 Ei~~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p---~i-~Ie~l~pd~~g~~e~l~~L~~aGldv~ 236 (375)
||++.++++.+.|+++++|+||.++ ++.+.+++.++|+.|++..+ .+ .|.+-.+.+ +.+.++.|+++|++.|
T Consensus 119 EI~~ea~~~~~~G~~~i~LvsGe~p--~~~~~eyi~e~i~~I~~~~~~~g~i~~v~inig~l--t~eey~~LkeaGv~~~ 194 (469)
T PRK09613 119 EIREEVKALEDMGHKRLALVAGEDP--PNCDIEYILESIKTIYSTKHGNGEIRRVNVNIAPT--TVENYKKLKEAGIGTY 194 (469)
T ss_pred HHHHHHHHHHHCCCCEEEEEeCCCC--CCCCHHHHHHHHHHHHHhccccCcceeeEEEeecC--CHHHHHHHHHcCCCEE
Confidence 9999999999999999999998763 22338999999999997532 21 233334444 7899999999999999
Q ss_pred cccccchH-HHHHHhcC--CCCCHHHHHHHHHHHHHhCCCCce-EEEeEEEecCCCHHHHHHHHHHHHHc------CCcE
Q 017200 237 AHNIETVE-ELQSAVRD--HRANFKQSLDVLMMAKDYVPAGTL-TKTSIMLGCGETPDQVVSTMEKVRAA------GVDV 306 (375)
Q Consensus 237 ~hnlEtv~-rl~~~mr~--r~~s~~~~l~vl~~ak~~~p~Gl~-tkt~imvGlGET~ee~~etl~~Lrel------gvd~ 306 (375)
.+++||.+ ++|++++| ++++|++++++++.|++ .|+. +++|+|+|+||+.+|++.++..++.+ |++.
T Consensus 195 ~l~qETY~~ety~~~hp~g~k~~y~~Rl~t~~rA~~---aGi~~Vg~G~L~GLge~~~E~~~l~~hl~~L~~~~gvgp~t 271 (469)
T PRK09613 195 QLFQETYHKPTYEKMHPSGPKSDYDWRLTAMDRAME---AGIDDVGIGVLFGLYDYKFEVLGLLMHAEHLEERFGVGPHT 271 (469)
T ss_pred EeccccCCHHHHHhcCCCCCCCCHHHHHHHHHHHHH---cCCCeeCeEEEEcCCCCHHHHHHHHHHHHHHHHhhCCCCcc
Confidence 99999965 99999974 37899999999999999 6897 99999999999999999999999888 5777
Q ss_pred EeeecCCCCCCCCCCcccc---CCHHHHHHH
Q 017200 307 MTFGQYMRPSKRHMPVSEY---ITPEAFERY 334 (375)
Q Consensus 307 v~i~qYl~P~~~~~~v~~~---v~pe~~~~l 334 (375)
|+| +.++|. .++|+... +.++++..+
T Consensus 272 Isv-prl~P~-~Gtpl~~~~~~vsd~e~lri 300 (469)
T PRK09613 272 ISV-PRLRPA-DGSDLENFPYLVSDEDFKKI 300 (469)
T ss_pred ccc-cceecC-CCCCcccCCCCCCHHHHHHH
Confidence 888 788894 46665322 455544333
No 35
>PRK14329 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=99.91 E-value=6.9e-23 Score=211.42 Aligned_cols=215 Identities=19% Similarity=0.268 Sum_probs=171.9
Q ss_pred EEEEeeeCCccCCCCcCCCCCCCCCC-CCCCcchHHHHHHHHHhcCCcEEEEEeeeCCCCC-cc-c-----HHHHHHHHH
Q 017200 129 TATIMILGDTCTRGCRFCNVKTSRAP-PPPDPDEPTNVAEAIASWGLDYVVITSVDRDDLA-DQ-G-----SGHFAQTVR 200 (375)
Q Consensus 129 tatfm~i~d~C~~~C~FC~v~~~r~~-~~ld~eEi~~~a~al~~~G~~eIvLTsgdr~dl~-d~-G-----~~~~~~lir 200 (375)
+..|+.+++||+.+|+||+++..+++ .+.++++++++++.+.+.|+++|+|++.+-+++. |. + ...|.++++
T Consensus 168 ~~a~i~isrGCp~~CsFC~ip~~~G~~rsrs~e~Vv~Ei~~l~~~g~~eI~l~~~~~~~y~~d~~~~~~~~~~~l~~Ll~ 247 (467)
T PRK14329 168 VSAFVSIMRGCDNMCTFCVVPFTRGRERSRDPESILNEVRDLFAKGYKEVTLLGQNVDSYLWYGGGLKKDEAVNFAQLLE 247 (467)
T ss_pred cEEEEEeccCcccCCCCCccccccCCcccCCHHHHHHHHHHHHHCCCeEEEEEeecccccccccCCccccccccHHHHHH
Confidence 67899999999999999999876654 3589999999999999999999999998755442 21 1 236889999
Q ss_pred HHHHhCCCcEEE--eecCCCCCChHHHHHHHHc--Ccccccccccc-hHHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCc
Q 017200 201 KLKELKPNMLIE--ALVPDFRGNNGCVREVAKS--GLNVFAHNIET-VEELQSAVRDHRANFKQSLDVLMMAKDYVPAGT 275 (375)
Q Consensus 201 ~Ik~~~p~i~Ie--~l~pd~~g~~e~l~~L~~a--Gldv~~hnlEt-v~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl 275 (375)
.|.+..+...|. ...|+.. +++.++.|+++ |+..+..++|+ ++++++.|+ |+++.++++++++.+++..|. +
T Consensus 248 ~l~~~~~~~~ir~~~~~p~~l-~~ell~~m~~~~~g~~~i~iglQSgsd~vLk~m~-R~~t~~~~~~~i~~ir~~~~~-~ 324 (467)
T PRK14329 248 MVAEAVPDMRIRFSTSHPKDM-TDDVLEVMAKYDNICKHIHLPVQSGSDRILKLMN-RKYTREWYLDRIDAIRRIIPD-C 324 (467)
T ss_pred HHHhcCCCcEEEEecCCcccC-CHHHHHHHHhCCCCCCeEEeCCCcCCHHHHHhcC-CCCCHHHHHHHHHHHHHhCCC-C
Confidence 988765554444 4556544 68899999887 78888889996 569999999 899999999999999998765 8
Q ss_pred eEEEeEEEec-CCCHHHHHHHHHHHHHcCCcEEeeecCC-CCCCCCCC-----ccccCCHHHHHHHHHHHHHhhhhhh
Q 017200 276 LTKTSIMLGC-GETPDQVVSTMEKVRAAGVDVMTFGQYM-RPSKRHMP-----VSEYITPEAFERYRALGMEMGFRYV 346 (375)
Q Consensus 276 ~tkt~imvGl-GET~ee~~etl~~Lrelgvd~v~i~qYl-~P~~~~~~-----v~~~v~pe~~~~l~~~a~~~gf~~~ 346 (375)
.+.++||+|| |||+|++.++++++++++++.++++.|. +|++.... +...+..++..+|.+++.++...+.
T Consensus 325 ~i~~d~IvGfPgET~edf~~tl~~i~~l~~~~~~v~~~sp~pGT~~~~~~~~~v~~~~~~~R~~~l~~~~~~~~~~~~ 402 (467)
T PRK14329 325 GISTDMIAGFPTETEEDHQDTLSLMEEVGYDFAFMFKYSERPGTYAARKLEDDVPEEVKKRRLNEIIALQQELSLERN 402 (467)
T ss_pred EEEEeEEEeCCCCCHHHHHHHHHHHHhhCCCeEeeeEecCCCCChhhhhCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999 9999999999999999999999998886 55433221 2223334567888888877666553
No 36
>PRK14335 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=99.91 E-value=9.6e-23 Score=209.70 Aligned_cols=216 Identities=15% Similarity=0.247 Sum_probs=172.3
Q ss_pred cEEEEeeeCCccCCCCcCCCCCCCCCCC-CCCcchHHHHHHHHHhcCCcEEEEEeeeCCCCC--c--ccHHHHHHHHHHH
Q 017200 128 ATATIMILGDTCTRGCRFCNVKTSRAPP-PPDPDEPTNVAEAIASWGLDYVVITSVDRDDLA--D--QGSGHFAQTVRKL 202 (375)
Q Consensus 128 ~tatfm~i~d~C~~~C~FC~v~~~r~~~-~ld~eEi~~~a~al~~~G~~eIvLTsgdr~dl~--d--~G~~~~~~lir~I 202 (375)
.+..|+.+++||+++|+||+++..++.. +.++++++++++.+.+.|+++|+|+|++-..+. | +....+.++++.|
T Consensus 151 ~~~~~i~I~rGC~~~CsfC~~p~~rG~~rsr~~e~Vv~Ei~~l~~~G~~ei~l~g~~~~~y~~~~~~~~~~~~~~Ll~~l 230 (455)
T PRK14335 151 SFQSFIPIMNGCNNFCSYCIVPYVRGREISRDLDAILQEIDVLSEKGVREITLLGQNVNSYRGRDREGNIVTFPQLLRHI 230 (455)
T ss_pred CceEEEEhhcCCCCCCCCCCcccCCCCCccCCHHHHHHHHHHHHHCCCeEEEEEeecccccccccccCCccCHHHHHHHH
Confidence 3778999999999999999999866543 588999999999999999999999999754442 1 1123588999888
Q ss_pred HHh---CCCc-EEEe--ecCCCCCChHHHHHHHH--cCcccccccccc-hHHHHHHhcCCCCCHHHHHHHHHHHHHhCCC
Q 017200 203 KEL---KPNM-LIEA--LVPDFRGNNGCVREVAK--SGLNVFAHNIET-VEELQSAVRDHRANFKQSLDVLMMAKDYVPA 273 (375)
Q Consensus 203 k~~---~p~i-~Ie~--l~pd~~g~~e~l~~L~~--aGldv~~hnlEt-v~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~ 273 (375)
.+. .+++ ++.. +.|+.. +.+.++.|++ +|+..+..++|+ ++++++.|+ |+++.++++++++.+++..|.
T Consensus 231 ~~~~~~~~~i~~ir~~s~~p~~i-~~ell~~m~~~~~gc~~l~iglQSgsd~vLk~m~-R~~t~e~~~~~v~~ir~~~pg 308 (455)
T PRK14335 231 VRRAEVTDQIRWIRFMSSHPKDL-SDDLIATIAQESRLCRLVHLPVQHGSNGVLKRMN-RSYTREHYLSLVGKLKASIPN 308 (455)
T ss_pred HHhhcccCCceEEEEeecCcccC-CHHHHHHHHhCCCCCCeEEEccCcCCHHHHHHcC-CCCCHHHHHHHHHHHHHhCCC
Confidence 532 2222 4443 556543 7889999988 478888888996 579999999 899999999999999997764
Q ss_pred CceEEEeEEEec-CCCHHHHHHHHHHHHHcCCcEEeeecCC-CCCCCCCC----ccccCCHHHHHHHHHHHHHhhhhhh
Q 017200 274 GTLTKTSIMLGC-GETPDQVVSTMEKVRAAGVDVMTFGQYM-RPSKRHMP----VSEYITPEAFERYRALGMEMGFRYV 346 (375)
Q Consensus 274 Gl~tkt~imvGl-GET~ee~~etl~~Lrelgvd~v~i~qYl-~P~~~~~~----v~~~v~pe~~~~l~~~a~~~gf~~~ 346 (375)
+.+.++||+|| |||++++.++++++++++++.++++.|. +|++.... |...+..++.++|.+++.++...+.
T Consensus 309 -i~i~~d~IvGfPgET~edf~~Tl~~i~~l~~~~~~~~~~sp~pGT~~~~~~~~v~~~~k~~R~~~l~~~~~~~~~~~~ 386 (455)
T PRK14335 309 -VALSTDILIGFPGETEEDFEQTLDLMREVEFDSAFMYHYNPREGTPAYDFPDRIPDEVKIARLQRVIALQMSITLKKM 386 (455)
T ss_pred -CEEEEEEEEeCCCCCHHHHHHHHHHHHhcCCCeEEEEEecCCCCCchhhCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999 9999999999999999999999999885 56443322 3344455688899999888777664
No 37
>PRK14336 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=99.91 E-value=9.5e-23 Score=207.68 Aligned_cols=215 Identities=16% Similarity=0.194 Sum_probs=169.4
Q ss_pred EEEEeeeCCccCCCCcCCCCCCCCCC-CCCCcchHHHHHHHHHhcCCcEEEEEeeeCCCCC-cc-cHHHHHHHHHHHHHh
Q 017200 129 TATIMILGDTCTRGCRFCNVKTSRAP-PPPDPDEPTNVAEAIASWGLDYVVITSVDRDDLA-DQ-GSGHFAQTVRKLKEL 205 (375)
Q Consensus 129 tatfm~i~d~C~~~C~FC~v~~~r~~-~~ld~eEi~~~a~al~~~G~~eIvLTsgdr~dl~-d~-G~~~~~~lir~Ik~~ 205 (375)
+..|+.+++||+++|+||+++..+++ .+.++++++++++.+.+.|+++|+|+|++-..+. |. +...|.++++.|++.
T Consensus 124 ~~a~i~i~rGC~~~CsFC~ip~~rG~~rsrs~e~Iv~Ei~~l~~~G~~ei~l~~~~~~~yg~d~~~~~~l~~Ll~~l~~~ 203 (418)
T PRK14336 124 VSANVTIMQGCDNFCTYCVVPYRRGREKSRSIAEIGCEVAELVRRGSREVVLLGQNVDSYGHDLPEKPCLADLLSALHDI 203 (418)
T ss_pred eEEEEEeccCCCCCCccCCccccCCCCccCCHHHHHHHHHHHHHCCCeEEEEEecCccccccCCCCcccHHHHHHHHHhc
Confidence 77899999999999999999987654 3589999999999999999999999999743331 21 124588999998764
Q ss_pred CCCcEEE--eecCCCCCChHHHHHHHHcC--cccccccccc-hHHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCceEEEe
Q 017200 206 KPNMLIE--ALVPDFRGNNGCVREVAKSG--LNVFAHNIET-VEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTS 280 (375)
Q Consensus 206 ~p~i~Ie--~l~pd~~g~~e~l~~L~~aG--ldv~~hnlEt-v~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~tkt~ 280 (375)
....+|. ...|+.. +++.++.+++.+ +..+..++|+ ++++++.|+ |+++.+++.+.++.+++..|. +.+.++
T Consensus 204 ~~~~~ir~~~~~p~~i-~~ell~~l~~~~~~~~~l~lglQSgsd~vLk~M~-R~~~~~~~~~~i~~lr~~~pg-i~i~~d 280 (418)
T PRK14336 204 PGLLRIRFLTSHPKDI-SQKLIDAMAHLPKVCRSLSLPVQAGDDTILAAMR-RGYTNQQYRELVERLKTAMPD-ISLQTD 280 (418)
T ss_pred CCccEEEEeccChhhc-CHHHHHHHHhcCccCCceecCCCcCCHHHHHHhC-CCCCHHHHHHHHHHHHhhCCC-CEEEEE
Confidence 2223454 4456544 688899888854 6777777886 569999999 899999999999999998765 999999
Q ss_pred EEEec-CCCHHHHHHHHHHHHHcCCcEEeeecCC-CCCCCCC-----CccccCCHHHHHHHHHHHHHhhhhhh
Q 017200 281 IMLGC-GETPDQVVSTMEKVRAAGVDVMTFGQYM-RPSKRHM-----PVSEYITPEAFERYRALGMEMGFRYV 346 (375)
Q Consensus 281 imvGl-GET~ee~~etl~~Lrelgvd~v~i~qYl-~P~~~~~-----~v~~~v~pe~~~~l~~~a~~~gf~~~ 346 (375)
+|+|| |||++++.++++++++++++.++++.|. +|++... +|...+..++.+.|++++.+....+.
T Consensus 281 ~IvGfPGET~edf~~tl~fi~~~~~~~~~v~~ysp~pGT~a~~~~~~~v~~~~k~~R~~~l~~~~~~~~~~~~ 353 (418)
T PRK14336 281 LIVGFPSETEEQFNQSYKLMADIGYDAIHVAAYSPRPQTVAARDMADDVPVIEKKRRLKLIEDLQKETVGKAN 353 (418)
T ss_pred EEEECCCCCHHHHHHHHHHHHhcCCCEEEeeecCCCCCChhHhhCccCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999 9999999999999999999999999886 4543222 13333445577888888887766553
No 38
>PRK06245 cofG FO synthase subunit 1; Reviewed
Probab=99.91 E-value=1e-22 Score=201.52 Aligned_cols=206 Identities=16% Similarity=0.227 Sum_probs=145.8
Q ss_pred EEEE-----eeeCCccCCCCcCCCCCCCCCC-CCCCcchHHHHHHHHHhcCCcEEEEEeeeCCCCC---------cccHH
Q 017200 129 TATI-----MILGDTCTRGCRFCNVKTSRAP-PPPDPDEPTNVAEAIASWGLDYVVITSVDRDDLA---------DQGSG 193 (375)
Q Consensus 129 tatf-----m~i~d~C~~~C~FC~v~~~r~~-~~ld~eEi~~~a~al~~~G~~eIvLTsgdr~dl~---------d~G~~ 193 (375)
.+|| +.++|+|+.+|+||+++..++. ..+++||+++.++++++.|+++|+||||+.+++. +.|+.
T Consensus 7 ~vt~~~~~~i~~Tn~C~~~C~fC~~~~~~~~~~~ls~eei~~~~~~~~~~G~~ei~l~gG~~p~~~~~~~~~~~~~~g~~ 86 (336)
T PRK06245 7 IVTYSRNVFIPLTYECRNRCGYCTFRRDPGQPSLLSPEEVKEILRRGADAGCTEALFTFGEVPDESYERIKEQLAEMGYS 86 (336)
T ss_pred eeEeecceeeeccccccCCCccCCCcCCCCccCcCCHHHHHHHHHHHHHCCCCEEEEecCCCCccchhhhhhhhhhhhHH
Confidence 5666 4579999999999999986533 3599999999999999999999999999886654 12233
Q ss_pred HHHHHHHHHHHhCC--CcEEEeecCCCCCChHHHHHHHHcCcccccccccch-HHHHHHhcC--CCCCHHHHHHHHHHHH
Q 017200 194 HFAQTVRKLKELKP--NMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETV-EELQSAVRD--HRANFKQSLDVLMMAK 268 (375)
Q Consensus 194 ~~~~lir~Ik~~~p--~i~Ie~l~pd~~g~~e~l~~L~~aGldv~~hnlEtv-~rl~~~mr~--r~~s~~~~l~vl~~ak 268 (375)
.+.+.+++|.+... ++.. .+.|... +.+.++.|+++|+. +.+++|+. +.+++.|+. ++.++++++++++.++
T Consensus 87 ~~~~~i~~i~~~~~~~g~~~-~~~~~~l-t~e~i~~Lk~ag~~-l~~~~et~~e~l~~~v~~~~~~~~~~~~l~~i~~a~ 163 (336)
T PRK06245 87 SILEYLYDLCELALEEGLLP-HTNAGIL-TREEMEKLKEVNAS-MGLMLEQTSPRLLNTVHRGSPGKDPELRLETIENAG 163 (336)
T ss_pred HHHHHHHHHHHHHhhcCCCc-cccCCCC-CHHHHHHHHHhCCC-CCCCccccchhhHHhhccCCCCCCHHHHHHHHHHHH
Confidence 45555555543211 1111 1223222 78899999998865 57788976 478766631 4668999999999999
Q ss_pred HhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcC-----CcEEeeecCCCCCCCCCCccccCCHHHHHHHHHHHHHhh
Q 017200 269 DYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAG-----VDVMTFGQYMRPSKRHMPVSEYITPEAFERYRALGMEMG 342 (375)
Q Consensus 269 ~~~p~Gl~tkt~imvGlGET~ee~~etl~~Lrelg-----vd~v~i~qYl~P~~~~~~v~~~v~pe~~~~l~~~a~~~g 342 (375)
+ .|+.++++||+|+|||++|++++|..+++++ ++.+.+..| .|. .++++.....+...+.++.+|..+-
T Consensus 164 ~---~Gi~~~~~~i~G~gEt~ed~~~~l~~l~~l~~~~gg~~~~~~~~f-~P~-~~T~~~~~~~~s~~e~l~~ia~~Rl 237 (336)
T PRK06245 164 K---LKIPFTTGILIGIGETWEDRAESLEAIAELHERYGHIQEVIIQNF-SPK-PGIPMENHPEPSLEEMLRVVALARL 237 (336)
T ss_pred H---cCCceeeeeeeECCCCHHHHHHHHHHHHHHHHhhCCCcEEecCCC-cCC-CCCCcccCCCcCHHHHHHHHHHHHH
Confidence 8 5899999999999999999999999999997 455666444 563 2444433222333444554554433
No 39
>PRK14337 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=99.90 E-value=1.6e-22 Score=207.56 Aligned_cols=215 Identities=18% Similarity=0.296 Sum_probs=171.7
Q ss_pred cEEEEeeeCCccCCCCcCCCCCCCCCCC-CCCcchHHHHHHHHHhcCCcEEEEEeeeCCCC-Ccc--cHHHHHHHHHHHH
Q 017200 128 ATATIMILGDTCTRGCRFCNVKTSRAPP-PPDPDEPTNVAEAIASWGLDYVVITSVDRDDL-ADQ--GSGHFAQTVRKLK 203 (375)
Q Consensus 128 ~tatfm~i~d~C~~~C~FC~v~~~r~~~-~ld~eEi~~~a~al~~~G~~eIvLTsgdr~dl-~d~--G~~~~~~lir~Ik 203 (375)
.+..|+.+++||+++|+||+++..+++. +.++++++++++.+.+.|+++|+|++.+-..+ .|. +...|.++++.|.
T Consensus 147 ~~~a~v~i~rGC~~~CsFC~ip~~rG~~rsr~~e~Iv~Ei~~l~~~G~~eI~l~~~~~~~yg~d~~~~~~~l~~Ll~~l~ 226 (446)
T PRK14337 147 PASAFVNIMQGCDNFCAYCIVPYTRGRQKSRSSAAVLDECRALVDRGAREITLLGQNVNSYGQDKHGDGTSFAQLLHKVA 226 (446)
T ss_pred CcEEEEEeccCCCCCCcCCCcccCCCCCeeCCHHHHHHHHHHHHHCCCeEEEEEecCccccccCCCCCCccHHHHHHHHH
Confidence 3678999999999999999998766543 58999999999999999999999999874333 121 1135888898887
Q ss_pred HhCCCc-EEE--eecCCCCCChHHHHHHHHc--Ccccccccccc-hHHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCceE
Q 017200 204 ELKPNM-LIE--ALVPDFRGNNGCVREVAKS--GLNVFAHNIET-VEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLT 277 (375)
Q Consensus 204 ~~~p~i-~Ie--~l~pd~~g~~e~l~~L~~a--Gldv~~hnlEt-v~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~t 277 (375)
+. +++ +|. .+.|+.. +++.++.+++. |+..+..++|+ ++++++.|+ |+++.++++++++.+++..|+ +.+
T Consensus 227 ~~-~g~~~ir~~~~~p~~i-~~ell~~l~~~~~~~~~l~iglQSgsd~vLk~M~-R~~t~e~~~~~v~~lr~~~~~-i~i 302 (446)
T PRK14337 227 AL-PGLERLRFTTPHPKDI-APEVIEAFGELPNLCPRLHLPLQSGSDRILKAMG-RKYDMARYLDIVTDLRAARPD-IAL 302 (446)
T ss_pred hc-CCCcEEEEccCCcccC-CHHHHHHHHhCCcccCeEEECCCCCCHHHHHhCC-CCCCHHHHHHHHHHHHHhCCC-CeE
Confidence 64 333 344 4456443 68889999884 46778888996 469999999 899999999999999998765 899
Q ss_pred EEeEEEec-CCCHHHHHHHHHHHHHcCCcEEeeecCC-CCCCCCCC----ccccCCHHHHHHHHHHHHHhhhhhh
Q 017200 278 KTSIMLGC-GETPDQVVSTMEKVRAAGVDVMTFGQYM-RPSKRHMP----VSEYITPEAFERYRALGMEMGFRYV 346 (375)
Q Consensus 278 kt~imvGl-GET~ee~~etl~~Lrelgvd~v~i~qYl-~P~~~~~~----v~~~v~pe~~~~l~~~a~~~gf~~~ 346 (375)
.+++|+|| |||+||+.++++++++++++.++++.|. +|++.... |...+..++.++|++++.++...+.
T Consensus 303 ~~d~IvG~PgET~ed~~~tl~~l~~~~~~~~~~f~ysp~pgT~a~~~~~~v~~~vk~~R~~~l~~~~~~~~~~~~ 377 (446)
T PRK14337 303 TTDLIVGFPGETEEDFEQTLEAMRTVGFASSFSFCYSDRPGTRAEMLPGKVPEEVKSARLARLQELQNELTERWL 377 (446)
T ss_pred EEeEEEECCCCCHHHHHHHHHHHHhcCCCeeEEEecCCCCCCccccCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999 9999999999999999999999998885 66554333 3344555688889888888777654
No 40
>TIGR00433 bioB biotin synthetase. Catalyzes the last step of the biotin biosynthesis pathway.
Probab=99.90 E-value=2.3e-22 Score=194.75 Aligned_cols=198 Identities=15% Similarity=0.268 Sum_probs=149.4
Q ss_pred eee-CCccCCCCcCCCCCCCCC---C--CCCCcchHHHHHHHHHhcCCcEEEEEe-eeCCCCCcccHHHHHHHHHHHHHh
Q 017200 133 MIL-GDTCTRGCRFCNVKTSRA---P--PPPDPDEPTNVAEAIASWGLDYVVITS-VDRDDLADQGSGHFAQTVRKLKEL 205 (375)
Q Consensus 133 m~i-~d~C~~~C~FC~v~~~r~---~--~~ld~eEi~~~a~al~~~G~~eIvLTs-gdr~dl~d~G~~~~~~lir~Ik~~ 205 (375)
+.+ |++|+.+|.||+++.... . ..++++|+++.++.+.+.|++.++|++ |..++..+ ...+++.+..+++.
T Consensus 32 ~~i~s~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~g~~~~~l~~~g~~~~~~~--~~~~~~~i~~~~~~ 109 (296)
T TIGR00433 32 MNIKSGGCPEDCKYCSQSSRSKTGLPIERLKKVDEVLEEARKAKAAGATRFCLVASGRGPKDRE--FMEYVEAMVQIVEE 109 (296)
T ss_pred EecccCCCCCCCcCCCCcccCCCCCccccCCCHHHHHHHHHHHHHCCCCEEEEEEecCCCChHH--HHHHHHHHHHHHHh
Confidence 444 999999999999976421 1 137889999999999999999886654 43332111 12233333333333
Q ss_pred CCCcEEEeecCCCCCChHHHHHHHHcCcccccccccchHHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEec
Q 017200 206 KPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGC 285 (375)
Q Consensus 206 ~p~i~Ie~l~pd~~g~~e~l~~L~~aGldv~~hnlEtv~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~tkt~imvGl 285 (375)
. ++.+.+..+.. +.|.++.|+++|++.+.+++|+.+++++.++ ++++++++++.++.+++ .|+.+.+++|+|+
T Consensus 110 ~-~i~~~~~~g~~--~~e~l~~Lk~aG~~~v~i~~E~~~~~~~~i~-~~~s~~~~~~ai~~l~~---~Gi~v~~~~i~Gl 182 (296)
T TIGR00433 110 M-GLKTCATLGLL--DPEQAKRLKDAGLDYYNHNLDTSQEFYSNII-STHTYDDRVDTLENAKK---AGLKVCSGGIFGL 182 (296)
T ss_pred C-CCeEEecCCCC--CHHHHHHHHHcCCCEEEEcccCCHHHHhhcc-CCCCHHHHHHHHHHHHH---cCCEEEEeEEEeC
Confidence 2 46554433323 7899999999999999999997779999999 68999999999999999 5899999999999
Q ss_pred CCCHHHHHHHHHHHHHcCCcEEeeecCCCCCCCCCCccccCCHHHHHHHHHHHHHh
Q 017200 286 GETPDQVVSTMEKVRAAGVDVMTFGQYMRPSKRHMPVSEYITPEAFERYRALGMEM 341 (375)
Q Consensus 286 GET~ee~~etl~~Lrelgvd~v~i~qYl~P~~~~~~v~~~v~pe~~~~l~~~a~~~ 341 (375)
|||.+|+.++++.+++++++.+++. .+.|. +++++..+..++..+.++.+|..+
T Consensus 183 ~et~~d~~~~~~~l~~l~~~~i~l~-~l~p~-~gT~l~~~~~~s~~~~~~~ia~~r 236 (296)
T TIGR00433 183 GETVEDRIGLALALANLPPESVPIN-FLVKI-KGTPLADNKELSADDALKTIALAR 236 (296)
T ss_pred CCCHHHHHHHHHHHHhCCCCEEEee-eeEEc-CCCccCCCCCCCHHHHHHHHHHHH
Confidence 9999999999999999999999884 44563 366666655556666666666553
No 41
>TIGR01574 miaB-methiolase tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB. Hits to this model span all major groups of bacteria and eukaryotes, but not archaea, which are known to lack this particular tRNA modification. The enzyme from Thermotoga maritima has been cloned, expressed, spectroscopically characterized and shown to complement the E. coli MiaB enzyme.
Probab=99.90 E-value=2e-22 Score=206.33 Aligned_cols=215 Identities=16% Similarity=0.220 Sum_probs=168.4
Q ss_pred EEEEeeeCCccCCCCcCCCCCCCCCCC-CCCcchHHHHHHHHHhcCCcEEEEEeeeCCCC-C-c--ccHHHHHHHHHHHH
Q 017200 129 TATIMILGDTCTRGCRFCNVKTSRAPP-PPDPDEPTNVAEAIASWGLDYVVITSVDRDDL-A-D--QGSGHFAQTVRKLK 203 (375)
Q Consensus 129 tatfm~i~d~C~~~C~FC~v~~~r~~~-~ld~eEi~~~a~al~~~G~~eIvLTsgdr~dl-~-d--~G~~~~~~lir~Ik 203 (375)
+..|+.+++||+++|+||+++..+++. .+++++++++++.+++.|+++|+|+|.+-..+ . | ++...|.++++.|.
T Consensus 145 ~~~~v~i~rGC~~~CsfC~~~~~~G~~rsr~~e~I~~Ei~~l~~~g~~ei~l~~~~~~~y~g~d~~~~~~~l~~Ll~~l~ 224 (438)
T TIGR01574 145 YKSFINIMIGCNKFCTYCIVPYTRGDEISRPFDDILQEVQKLAEKGVREITLLGQNVNAYRGKDFEGKTMDFSDLLRELS 224 (438)
T ss_pred eeEEeehhcCCCCCCCCCCeeeecCCCcccCHHHHHHHHHHHHHcCCeEEEEEecccCCccCCCCCCCcccHHHHHHHHH
Confidence 678999999999999999998766543 58999999999999999999999999875444 1 1 12235889999987
Q ss_pred HhCCCcEEE--eecCCCCCChHHHHHHHHcC--cccccccccc-hHHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCceEE
Q 017200 204 ELKPNMLIE--ALVPDFRGNNGCVREVAKSG--LNVFAHNIET-VEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTK 278 (375)
Q Consensus 204 ~~~p~i~Ie--~l~pd~~g~~e~l~~L~~aG--ldv~~hnlEt-v~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~tk 278 (375)
+.....++. .+.|+.. +++.++.|+++| ...+..++|+ ++++++.|+ |+++.+++++.++.+++..|. +.+.
T Consensus 225 ~~~~~~~ir~~~~~p~~l-~~ell~~l~~~g~~~~~l~iglQSgsd~vLk~m~-R~~t~~~~~~~v~~ir~~~~~-i~i~ 301 (438)
T TIGR01574 225 TIDGIERIRFTSSHPLDF-DDDLIEVFANNPKLCKSMHLPVQSGSSEILKLMK-RGYTREWYLNLVRKLRAACPN-VSIS 301 (438)
T ss_pred hcCCceEEEEecCCcccC-CHHHHHHHHhCCCccCceeeCCCcCCHHHHHhcC-CCCCHHHHHHHHHHHHHhCCC-CeEe
Confidence 542222343 3456433 788999999998 7788888996 569999999 899999999999999997664 8899
Q ss_pred EeEEEec-CCCHHHHHHHHHHHHHcCCcEEeeecCC-CCCCCCCCccccCC----HHHHHHHHHHHHHhhhhhh
Q 017200 279 TSIMLGC-GETPDQVVSTMEKVRAAGVDVMTFGQYM-RPSKRHMPVSEYIT----PEAFERYRALGMEMGFRYV 346 (375)
Q Consensus 279 t~imvGl-GET~ee~~etl~~Lrelgvd~v~i~qYl-~P~~~~~~v~~~v~----pe~~~~l~~~a~~~gf~~~ 346 (375)
++||+|| |||++++.++++++++++++.+++++|. +|++....+...+. .++...|.+++.++...+.
T Consensus 302 ~d~IvG~PgEt~ed~~~tl~~i~~~~~~~~~~~~~sp~pGT~~~~~~~~v~~~~~~~r~~~l~~~~~~~~~~~~ 375 (438)
T TIGR01574 302 TDIIVGFPGETEEDFEETLDLLREVEFDSAFSFIYSPRPGTPAADMPDQIPEEIKKRRLQRLQARHNEILDKKM 375 (438)
T ss_pred eCEEEeCCCCCHHHHHHHHHHHHhcCCCeeeeEEecCCCCCchhhCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999 9999999999999999999999998885 45443322332333 3466777777777665543
No 42
>TIGR01579 MiaB-like-C MiaB-like tRNA modifying enzyme. This clade is a member of a subfamily (TIGR00089) and spans low GC Gram positive bacteria, alpha and epsilon proteobacteria, Campylobacter, Porphyromonas, Aquifex, Thermotoga, Chlamydia, Treponema and Fusobacterium.
Probab=99.90 E-value=2.2e-22 Score=204.37 Aligned_cols=215 Identities=15% Similarity=0.267 Sum_probs=169.5
Q ss_pred EEEEeeeCCccCCCCcCCCCCCCCCC-CCCCcchHHHHHHHHHhcCCcEEEEEeeeCCCCCcc--cHHHHHHHHHHHHHh
Q 017200 129 TATIMILGDTCTRGCRFCNVKTSRAP-PPPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQ--GSGHFAQTVRKLKEL 205 (375)
Q Consensus 129 tatfm~i~d~C~~~C~FC~v~~~r~~-~~ld~eEi~~~a~al~~~G~~eIvLTsgdr~dl~d~--G~~~~~~lir~Ik~~ 205 (375)
...|+.+++||+.+|+||+++..++. ...++++++++++.+.+.|+++|+|++++-..+.+. +...+.++++.|++.
T Consensus 138 ~~~~i~isrGCp~~CsfC~~~~~~g~~r~r~~e~I~~Ei~~l~~~g~~ei~l~~~~~~~y~~d~~~~~~l~~Ll~~l~~~ 217 (414)
T TIGR01579 138 TRAFIKVQDGCNFFCSYCIIPFARGRSRSVPMEAILKQVKILVAKGYKEIVLTGVNLGSYGDDLKNGTSLAKLLEQILQI 217 (414)
T ss_pred eEEEEEeccCcCCCCCCCceeeecCCCccCCHHHHHHHHHHHHHCCCceEEEeeEccchhccCCCCCCcHHHHHHHHhcC
Confidence 56788899999999999999876543 358999999999999999999999999874433211 124688899988764
Q ss_pred CCC--cEEEeecCCCCCChHHHHHHHHcC--cccccccccch-HHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCceEEEe
Q 017200 206 KPN--MLIEALVPDFRGNNGCVREVAKSG--LNVFAHNIETV-EELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTS 280 (375)
Q Consensus 206 ~p~--i~Ie~l~pd~~g~~e~l~~L~~aG--ldv~~hnlEtv-~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~tkt~ 280 (375)
... +++..+.|+.. +++.++.|+++| ...+..++|+. +++++.|+ |+++.+++++.++.+++..+ |+.+.++
T Consensus 218 ~~~~~ir~~~~~p~~~-~~ell~~m~~~~~~~~~l~lglESgs~~vLk~m~-R~~~~~~~~~~v~~l~~~~~-gi~i~~~ 294 (414)
T TIGR01579 218 PGIKRIRLSSIDPEDI-DEELLEAIASEKRLCPHLHLSLQSGSDRVLKRMR-RKYTRDDFLKLVNKLRSVRP-DYAFGTD 294 (414)
T ss_pred CCCcEEEEeCCChhhC-CHHHHHHHHhcCccCCCeEECCCcCChHHHHhcC-CCCCHHHHHHHHHHHHHhCC-CCeeeee
Confidence 222 34444456533 788999999887 66788889975 59999999 89999999999999999665 5999999
Q ss_pred EEEec-CCCHHHHHHHHHHHHHcCCcEEeeecCC-CCCCCCCC----ccccCCHHHHHHHHHHHHHhhhhhh
Q 017200 281 IMLGC-GETPDQVVSTMEKVRAAGVDVMTFGQYM-RPSKRHMP----VSEYITPEAFERYRALGMEMGFRYV 346 (375)
Q Consensus 281 imvGl-GET~ee~~etl~~Lrelgvd~v~i~qYl-~P~~~~~~----v~~~v~pe~~~~l~~~a~~~gf~~~ 346 (375)
+|+|| |||+|++.++++++++++++.++++.|. .|++.... +...+..++.++|++++.++...+.
T Consensus 295 ~IvG~PgET~ed~~~tl~~i~~~~~~~~~~~~~sp~pGT~~~~~~~~v~~~~~~~r~~~l~~~~~~~~~~~~ 366 (414)
T TIGR01579 295 IIVGFPGESEEDFQETLRMVKEIEFSHLHIFPYSARPGTPASTMKDKVPETIKKERVKRLKELAEKNYQEFL 366 (414)
T ss_pred EEEECCCCCHHHHHHHHHHHHhCCCCEEEeeecCCCCCCchhhCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999 9999999999999999999999998885 45443222 3333445678888888888777554
No 43
>PRK14331 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=99.90 E-value=2.4e-22 Score=205.69 Aligned_cols=215 Identities=13% Similarity=0.247 Sum_probs=169.3
Q ss_pred EEEEeeeCCccCCCCcCCCCCCCCCC-CCCCcchHHHHHHHHHhcCCcEEEEEeeeCCCCC-cccHHHHHHHHHHHHHhC
Q 017200 129 TATIMILGDTCTRGCRFCNVKTSRAP-PPPDPDEPTNVAEAIASWGLDYVVITSVDRDDLA-DQGSGHFAQTVRKLKELK 206 (375)
Q Consensus 129 tatfm~i~d~C~~~C~FC~v~~~r~~-~~ld~eEi~~~a~al~~~G~~eIvLTsgdr~dl~-d~G~~~~~~lir~Ik~~~ 206 (375)
+..|+.+++||+.+|+||+++..+++ ...++++++++++.+.+.|+++|+|++.+-..+. |.+...+.++++.|.+..
T Consensus 146 ~~a~v~i~rGC~~~CsFC~~p~~~g~~rsr~~e~V~~Ei~~l~~~g~~eI~l~d~~~~~y~~~~~~~~~~~Ll~~l~~~~ 225 (437)
T PRK14331 146 YCAYVTVMRGCDKKCTYCVVPKTRGKERSRRLGSILDEVQWLVDDGVKEIHLIGQNVTAYGKDIGDVPFSELLYAVAEID 225 (437)
T ss_pred cEEEEEeccCcCCCCccCCcccCCCCcccCCHHHHHHHHHHHHHCCCeEEEEeeeccccccCCCCCCCHHHHHHHHhcCC
Confidence 67889999999999999999976644 3588999999999999999999999998754332 111134788888887643
Q ss_pred C--CcEEEeecCCCCCChHHHHHHHHc--Ccccccccccc-hHHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeE
Q 017200 207 P--NMLIEALVPDFRGNNGCVREVAKS--GLNVFAHNIET-VEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSI 281 (375)
Q Consensus 207 p--~i~Ie~l~pd~~g~~e~l~~L~~a--Gldv~~hnlEt-v~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~tkt~i 281 (375)
+ .+++....|... +++.++.++++ |+..+..++|+ ++++++.|+ |+++.++++++++.+++..| |+.+.++|
T Consensus 226 g~~~i~~~~~~p~~l-~~ell~~~~~~~~~~~~l~igiqSgsd~vLk~m~-R~~t~~~~~~~v~~lr~~~~-gi~i~~d~ 302 (437)
T PRK14331 226 GVERIRFTTGHPRDL-DEDIIKAMADIPQVCEHLHLPFQAGSDRILKLMD-RGYTKEEYLEKIELLKEYIP-DITFSTDI 302 (437)
T ss_pred CccEEEEeccCcccC-CHHHHHHHHcCCccCCceecccccCChHHHHHcC-CCCCHHHHHHHHHHHHHhCC-CCEEecCE
Confidence 2 244444456433 78999999988 47888888996 569999999 89999999999999999776 59999999
Q ss_pred EEec-CCCHHHHHHHHHHHHHcCCcEEeeecCC-CCCCCCCCcc----ccCCHHHHHHHHHHHHHhhhhhh
Q 017200 282 MLGC-GETPDQVVSTMEKVRAAGVDVMTFGQYM-RPSKRHMPVS----EYITPEAFERYRALGMEMGFRYV 346 (375)
Q Consensus 282 mvGl-GET~ee~~etl~~Lrelgvd~v~i~qYl-~P~~~~~~v~----~~v~pe~~~~l~~~a~~~gf~~~ 346 (375)
|+|| |||+|++.++++++++++++.++++.|. +|++....+. ..+..++...|.+++.++.+.+.
T Consensus 303 IvG~PgET~ed~~~tl~~l~~l~~~~i~~f~~sp~pGT~~~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~ 373 (437)
T PRK14331 303 IVGFPTETEEDFEETLDVLKKVEFEQVFSFKYSPRPGTPAAYMEGQEPDEVKTKRMNRLLELQKEITFKKA 373 (437)
T ss_pred EEECCCCCHHHHHHHHHHHHhcCcceeeeeEecCCCCcchhhCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999 9999999999999999999999998885 4544332222 23334567888888888777664
No 44
>PRK14326 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=99.90 E-value=4.6e-22 Score=206.91 Aligned_cols=214 Identities=19% Similarity=0.299 Sum_probs=166.0
Q ss_pred EEEEeeeCCccCCCCcCCCCCCCCCCC-CCCcchHHHHHHHHHhcCCcEEEEEeeeCCCCC-c-ccHHHHHHHHHHHHHh
Q 017200 129 TATIMILGDTCTRGCRFCNVKTSRAPP-PPDPDEPTNVAEAIASWGLDYVVITSVDRDDLA-D-QGSGHFAQTVRKLKEL 205 (375)
Q Consensus 129 tatfm~i~d~C~~~C~FC~v~~~r~~~-~ld~eEi~~~a~al~~~G~~eIvLTsgdr~dl~-d-~G~~~~~~lir~Ik~~ 205 (375)
+.+|+.+++||+++|+||+++..++.. +.++++|+++++.+.+.|+++|+|++.+-..+. | .+...|.++++.+.+.
T Consensus 157 ~~a~v~isrGCp~~CsFC~ip~~rG~~rsr~~e~Vv~Ei~~l~~~g~~ei~l~d~n~~~yG~d~~~~~~l~~Ll~~l~~i 236 (502)
T PRK14326 157 YAAWVSISVGCNNTCTFCIVPSLRGKEKDRRPGDILAEVQALVDEGVLEVTLLGQNVNAYGVSFGDRGAFSKLLRACGEI 236 (502)
T ss_pred ceEEEEEccCCCCCCccCceeccCCCcccCCHHHHHHHHHHHHHCCCceEEEEeecccccccCCCCHHHHHHHHHHHHhc
Confidence 567899999999999999999876543 589999999999999999999999999754331 1 1134688888888654
Q ss_pred CC--CcEEEeecCCCCCChHHHHHHHHcC--cccccccccc-hHHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCceEEEe
Q 017200 206 KP--NMLIEALVPDFRGNNGCVREVAKSG--LNVFAHNIET-VEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTS 280 (375)
Q Consensus 206 ~p--~i~Ie~l~pd~~g~~e~l~~L~~aG--ldv~~hnlEt-v~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~tkt~ 280 (375)
.+ .+++..+.|+.. +++.++.|+++| ...+..++|+ ++++++.|+ |+++.++++++++.+++..|. +.+.++
T Consensus 237 ~~l~~ir~~~~~p~~~-~~ell~~m~~~g~~~~~l~lglQSgsd~iLk~m~-R~~t~~~~~~~v~~lr~~~~~-i~i~~~ 313 (502)
T PRK14326 237 DGLERVRFTSPHPAEF-TDDVIEAMAETPNVCPQLHMPLQSGSDRVLRAMR-RSYRSERFLGILEKVRAAMPD-AAITTD 313 (502)
T ss_pred CCccEEEEeccChhhC-CHHHHHHHHhcCCcCCcEEeccCCCCHHHHHhcC-CCCCHHHHHHHHHHHHHhCCC-CeEEEE
Confidence 32 244444555433 789999999987 6677788996 569999999 899999999999999997664 889999
Q ss_pred EEEec-CCCHHHHHHHHHHHHHcCCcEEeeecCC-CCCCCCCCcccc----CCHHHHHHHHHHHHHhhhhh
Q 017200 281 IMLGC-GETPDQVVSTMEKVRAAGVDVMTFGQYM-RPSKRHMPVSEY----ITPEAFERYRALGMEMGFRY 345 (375)
Q Consensus 281 imvGl-GET~ee~~etl~~Lrelgvd~v~i~qYl-~P~~~~~~v~~~----v~pe~~~~l~~~a~~~gf~~ 345 (375)
||+|| |||++|+.++++++++++++.+.++.|. +|++....+... +..+++++|.+++.++...+
T Consensus 314 ~IvGfPgET~edf~~Tl~~i~~~~~~~~~~f~~sp~pGT~~~~~~~~v~~~v~~~R~~~l~~~~~~~~~~~ 384 (502)
T PRK14326 314 IIVGFPGETEEDFQATLDVVREARFSSAFTFQYSKRPGTPAAEMEGQLPKAVVQERYERLVALQERISLEE 384 (502)
T ss_pred EEEECCCCCHHHHHHHHHHHHHcCCCEEEEEeecCCCCChHHhCcCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999 9999999999999999999998888874 444332222222 33456777766666555443
No 45
>PRK14328 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=99.89 E-value=4.1e-22 Score=204.12 Aligned_cols=215 Identities=16% Similarity=0.253 Sum_probs=167.9
Q ss_pred EEEEeeeCCccCCCCcCCCCCCCCCC-CCCCcchHHHHHHHHHhcCCcEEEEEeeeCCCCC-cc-cHHHHHHHHHHHHHh
Q 017200 129 TATIMILGDTCTRGCRFCNVKTSRAP-PPPDPDEPTNVAEAIASWGLDYVVITSVDRDDLA-DQ-GSGHFAQTVRKLKEL 205 (375)
Q Consensus 129 tatfm~i~d~C~~~C~FC~v~~~r~~-~~ld~eEi~~~a~al~~~G~~eIvLTsgdr~dl~-d~-G~~~~~~lir~Ik~~ 205 (375)
+..|+.+++||+++|+||+++..+++ .+.++++++++++.+.+.|+++|+|+|++-.++. |. +...|.++++.|.+.
T Consensus 147 ~~~~i~i~rGC~~~CsfC~~p~~~g~~Rsr~~e~Iv~Ei~~l~~~G~~ei~l~~~~~~~yg~d~~~~~~l~~Ll~~l~~~ 226 (439)
T PRK14328 147 VKAFVTIMYGCNNFCTYCIVPYVRGRERSRKPEDIIAEIKELVSEGYKEVTLLGQNVNSYGKDLEEKIDFADLLRRVNEI 226 (439)
T ss_pred cEEEEEHHhCcCCCCCCCCcccccCCcccCCHHHHHHHHHHHHHCCCcEEEEeccccCcCCcCCCCCcCHHHHHHHHHhc
Confidence 67799999999999999999986654 3588999999999999999999999998754432 11 123478888888753
Q ss_pred CCCcEEE--eecCCCCCChHHHHHHHHcC--cccccccccc-hHHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCceEEEe
Q 017200 206 KPNMLIE--ALVPDFRGNNGCVREVAKSG--LNVFAHNIET-VEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTS 280 (375)
Q Consensus 206 ~p~i~Ie--~l~pd~~g~~e~l~~L~~aG--ldv~~hnlEt-v~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~tkt~ 280 (375)
....++. .+.|+.. +++.++.|+++| +..+..++|+ ++++++.|+ |+++.+++++.++.+++..|. +.+.++
T Consensus 227 ~~~~~ir~~~~~P~~i-~~ell~~l~~~~~~~~~l~iglQSgsd~vLk~M~-R~~~~~~~~~~i~~lr~~~~~-i~i~~d 303 (439)
T PRK14328 227 DGLERIRFMTSHPKDL-SDDLIEAIADCDKVCEHIHLPVQSGSNRILKKMN-RHYTREYYLELVEKIKSNIPD-VAITTD 303 (439)
T ss_pred CCCcEEEEecCChhhc-CHHHHHHHHhCCCcCceeeeCCCcCCHHHHHhCC-CCCCHHHHHHHHHHHHHhCCC-CEEEEE
Confidence 2222444 4456543 788999999886 7778888896 569999999 899999999999999998765 889999
Q ss_pred EEEec-CCCHHHHHHHHHHHHHcCCcEEeeecCC-CCCCCCCCccccC----CHHHHHHHHHHHHHhhhhhh
Q 017200 281 IMLGC-GETPDQVVSTMEKVRAAGVDVMTFGQYM-RPSKRHMPVSEYI----TPEAFERYRALGMEMGFRYV 346 (375)
Q Consensus 281 imvGl-GET~ee~~etl~~Lrelgvd~v~i~qYl-~P~~~~~~v~~~v----~pe~~~~l~~~a~~~gf~~~ 346 (375)
+|+|| |||++|+.++++++++++++.++++.|. +|++....+.+.+ ..++++.|++++.++.+.+.
T Consensus 304 ~IvG~PgET~ed~~~tl~~i~~l~~~~~~~~~~sp~pGT~~~~~~~~v~~~~~~~r~~~l~~~~~~~~~~~~ 375 (439)
T PRK14328 304 IIVGFPGETEEDFEETLDLVKEVRYDSAFTFIYSKRKGTPAAKMEDQVPEDVKHERFNRLVELQNKISLEKN 375 (439)
T ss_pred EEEECCCCCHHHHHHHHHHHHhcCCCcccceEecCCCCChhhhCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999 9999999999999999999999998885 4543322222333 34567788888877666543
No 46
>PRK14330 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=99.89 E-value=5.2e-22 Score=203.02 Aligned_cols=215 Identities=14% Similarity=0.217 Sum_probs=166.5
Q ss_pred EEEEeeeCCccCCCCcCCCCCCCCCC-CCCCcchHHHHHHHHHhcCCcEEEEEeeeCCCCC-cc-cHHHHHHHHHHHHHh
Q 017200 129 TATIMILGDTCTRGCRFCNVKTSRAP-PPPDPDEPTNVAEAIASWGLDYVVITSVDRDDLA-DQ-GSGHFAQTVRKLKEL 205 (375)
Q Consensus 129 tatfm~i~d~C~~~C~FC~v~~~r~~-~~ld~eEi~~~a~al~~~G~~eIvLTsgdr~dl~-d~-G~~~~~~lir~Ik~~ 205 (375)
+..|+.+++||+.+|+||+++..+++ .+.++++++++++.+.+.|+++|+|++++-+.+. |. +...+.++++.+.+.
T Consensus 140 ~~~~v~i~rGC~~~CsFC~ip~~~G~~rsr~~e~Iv~Ei~~l~~~g~kei~l~~~n~~~yg~~~~~~~~l~~Ll~~~~~~ 219 (434)
T PRK14330 140 HHAWVTIIYGCNRFCTYCIVPYTRGREKSRPMEDILEEVEKLAKQGYREVTFLGQNVDAYGKDLKDGSSLAKLLEEASKI 219 (434)
T ss_pred cEEEEEcccCCCCCCCCCceECcCCCCccCCHHHHHHHHHHHHHCCCcEEEEEEecccccccCCCCCccHHHHHHHHHhc
Confidence 67788999999999999999876654 3589999999999999999999999998754431 10 123578888877654
Q ss_pred CCC--cEEEeecCCCCCChHHHHHHHHcC--cccccccccc-hHHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCceEEEe
Q 017200 206 KPN--MLIEALVPDFRGNNGCVREVAKSG--LNVFAHNIET-VEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTS 280 (375)
Q Consensus 206 ~p~--i~Ie~l~pd~~g~~e~l~~L~~aG--ldv~~hnlEt-v~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~tkt~ 280 (375)
.+. +++....|+.. +++.++.++++| +..+..++|+ ++++++.|+ |+++.+++.+.++.+++..|. +.+.++
T Consensus 220 ~~~~~~~~~~~~p~~~-~~ell~~l~~~~~~~~~l~iglQSgsd~vLk~M~-R~~~~~~~~~~i~~lr~~~~~-i~i~~d 296 (434)
T PRK14330 220 EGIERIWFLTSYPTDF-SDELIEVIANSPKVAKSIHLPVQSGSNRILKLMN-RRYTREEYLELIEKIRSKVPD-ASISSD 296 (434)
T ss_pred CCceEEEEecCChhhc-CHHHHHHHhcCCcccCceecCcCCCCHHHHHhcC-CCCCHHHHHHHHHHHHHhCCC-CEEEEE
Confidence 322 23333445432 688899999887 5667788996 569999999 899999999999999998765 889999
Q ss_pred EEEec-CCCHHHHHHHHHHHHHcCCcEEeeecCC-CCCCCCCC-ccccCC----HHHHHHHHHHHHHhhhhhh
Q 017200 281 IMLGC-GETPDQVVSTMEKVRAAGVDVMTFGQYM-RPSKRHMP-VSEYIT----PEAFERYRALGMEMGFRYV 346 (375)
Q Consensus 281 imvGl-GET~ee~~etl~~Lrelgvd~v~i~qYl-~P~~~~~~-v~~~v~----pe~~~~l~~~a~~~gf~~~ 346 (375)
||+|| |||++++.++++++++++++.++++.|. +|++.... +.+.+. .++..+|.+++.++.+.+.
T Consensus 297 ~IvGfPgET~edf~~tl~fi~~~~~~~~~~~~~sp~pGT~~~~~~~~~v~~~~~~~r~~~l~~~~~~~~~~~~ 369 (434)
T PRK14330 297 IIVGFPTETEEDFMETVDLVEKAQFERLNLAIYSPREGTVAWKYYKDDVPYEEKVRRMQYLLNLQKRINRKLN 369 (434)
T ss_pred EEEECCCCCHHHHHHHHHHHHhcCCCEEeeeeccCCCCChhhhhCccCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999 9999999999999999999999998885 45433222 223333 3567788888888776553
No 47
>PRK14862 rimO ribosomal protein S12 methylthiotransferase; Provisional
Probab=99.89 E-value=7.9e-22 Score=202.17 Aligned_cols=214 Identities=14% Similarity=0.265 Sum_probs=165.6
Q ss_pred EEEEeeeCCccCCCCcCCCCCCCCCC-CCCCcchHHHHHHHHHhcCCcEEEEEeeeCCCCC-cc--------c---HHHH
Q 017200 129 TATIMILGDTCTRGCRFCNVKTSRAP-PPPDPDEPTNVAEAIASWGLDYVVITSVDRDDLA-DQ--------G---SGHF 195 (375)
Q Consensus 129 tatfm~i~d~C~~~C~FC~v~~~r~~-~~ld~eEi~~~a~al~~~G~~eIvLTsgdr~dl~-d~--------G---~~~~ 195 (375)
..+|+.+++||+.+|+||+++..++. .+.++++++++++.+.+.|+++|+|+|.|...+. |. | ..++
T Consensus 139 ~~a~v~isrGCp~~CsFC~ip~~~G~~rsr~~e~Vv~Ei~~l~~~g~kei~l~~~d~~~yg~d~~~~~~~~~~~~~~~~~ 218 (440)
T PRK14862 139 HYAYLKISEGCNHRCTFCIIPSMRGDLVSRPIGDVLREAERLVKAGVKELLVISQDTSAYGVDVKYRTGFWNGRPVKTRM 218 (440)
T ss_pred cEEEEEeccCCCCCCccCCcccccCCccccCHHHHHHHHHHHHHCCCceEEEEecChhhhccccccccccccccchhhHH
Confidence 66788999999999999999986653 3589999999999999999999999998732221 10 1 2578
Q ss_pred HHHHHHHHHhCCCcEEEeecCCCCCChHHHHHHHHcCcc--cccccccc-hHHHHHHhcCCCCCHHHHHHHHHHHHHhCC
Q 017200 196 AQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLN--VFAHNIET-VEELQSAVRDHRANFKQSLDVLMMAKDYVP 272 (375)
Q Consensus 196 ~~lir~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGld--v~~hnlEt-v~rl~~~mr~r~~s~~~~l~vl~~ak~~~p 272 (375)
.++++.|.+....+++..+.|... +++.++.+++ |.- .+..++|+ ++++++.|+ ++++++++++.++.+++..|
T Consensus 219 ~~Ll~~l~~~~~~~r~~~~~p~~~-~dell~~m~~-g~~~~~l~IglESgs~~vLk~m~-r~~~~~~~~~~i~~lr~~~~ 295 (440)
T PRK14862 219 TDLCEALGELGAWVRLHYVYPYPH-VDEVIPLMAE-GKILPYLDIPFQHASPRVLKRMK-RPASVEKTLERIKKWREICP 295 (440)
T ss_pred HHHHHHHHhcCCEEEEecCCCCcC-CHHHHHHHhc-CCCccccccccccCCHHHHHhcC-CCCCHHHHHHHHHHHHHHCC
Confidence 999999987622224444566433 5688888888 532 34556885 579999999 89999999999999999876
Q ss_pred CCceEEEeEEEec-CCCHHHHHHHHHHHHHcCCcEEeeecCC-CCCCCCCCccccCC----HHHHHHHHHHHHHhhhhhh
Q 017200 273 AGTLTKTSIMLGC-GETPDQVVSTMEKVRAAGVDVMTFGQYM-RPSKRHMPVSEYIT----PEAFERYRALGMEMGFRYV 346 (375)
Q Consensus 273 ~Gl~tkt~imvGl-GET~ee~~etl~~Lrelgvd~v~i~qYl-~P~~~~~~v~~~v~----pe~~~~l~~~a~~~gf~~~ 346 (375)
. +.+.+++|+|| |||++++.++++++++++++.++++.|. +|+++...+...|+ .+++++|.+++.++...+.
T Consensus 296 ~-i~i~t~~IvGfPgET~edf~~tl~fi~e~~~d~~~~f~ysP~pGT~a~~~~~~v~~~~~~~r~~~l~~~~~~~~~~~~ 374 (440)
T PRK14862 296 D-LTIRSTFIVGFPGETEEDFQMLLDFLKEAQLDRVGCFKYSPVEGATANDLPDQVPEEVKEERWARFMEVQQQISAARL 374 (440)
T ss_pred C-ceecccEEEECCCCCHHHHHHHHHHHHHcCCCeeeeEeecCCCCCchhhCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5 88999999999 9999999999999999999999998885 55444322333344 4567788888777777664
No 48
>TIGR01125 MiaB-like tRNA modifying enzyme YliG, TIGR01125. This clade spans alpha and gamma proteobacteria, cyano bacteria, deinococcus, porphyromonas, aquifex, helicobacter, campylobacter, thermotoga, chlamydia, streptococcus coelicolor and clostridium, but does not include most other gram positive bacteria, archaea or eukaryotes.
Probab=99.89 E-value=9.8e-22 Score=200.72 Aligned_cols=214 Identities=16% Similarity=0.295 Sum_probs=166.4
Q ss_pred EEEEeeeCCccCCCCcCCCCCCCCCC-CCCCcchHHHHHHHHHhcCCcEEEEEeeeCCCCCc--ccHHHHHHHHHHHHHh
Q 017200 129 TATIMILGDTCTRGCRFCNVKTSRAP-PPPDPDEPTNVAEAIASWGLDYVVITSVDRDDLAD--QGSGHFAQTVRKLKEL 205 (375)
Q Consensus 129 tatfm~i~d~C~~~C~FC~v~~~r~~-~~ld~eEi~~~a~al~~~G~~eIvLTsgdr~dl~d--~G~~~~~~lir~Ik~~ 205 (375)
..+||.+++||+.+|+||.++..++. ...++++++++++.+.+.|+++|+|++.+...+.. .+..++.++++.|.+.
T Consensus 135 ~~~~i~~srGC~~~CsfC~~~~~~G~~r~r~~e~Vv~Ei~~l~~~g~k~i~~~~~d~~~~g~d~~~~~~l~~Ll~~i~~~ 214 (430)
T TIGR01125 135 HYAYLKVAEGCNRRCAFCIIPSIRGKLRSRPIEEILKEAERLVDQGVKEIILIAQDTTAYGKDLYRESKLVDLLEELGKV 214 (430)
T ss_pred eEEEEEEccCCCCCCCcCCeecccCCceecCHHHHHHHHHHHHHCCCcEEEEEeECCCccccCCCCcccHHHHHHHHHhc
Confidence 66789999999999999999876543 35889999999999999999999999986543321 0135688999998765
Q ss_pred CC--CcEEEeecCCCCCChHHHHHHHHcC--cccccccccch-HHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCceEEEe
Q 017200 206 KP--NMLIEALVPDFRGNNGCVREVAKSG--LNVFAHNIETV-EELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTS 280 (375)
Q Consensus 206 ~p--~i~Ie~l~pd~~g~~e~l~~L~~aG--ldv~~hnlEtv-~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~tkt~ 280 (375)
.. .+++..+.|+.. +++.++.++++| +..+..++|+. +++++.|+ ++++.+++++.++.+++..| |+.+.++
T Consensus 215 ~~i~~~r~~~~~p~~~-~~ell~~~~~~~~~~~~l~iglES~s~~vLk~m~-k~~~~~~~~~~i~~l~~~~~-~i~i~~~ 291 (430)
T TIGR01125 215 GGIYWIRMHYLYPDEL-TDDVIDLMAEGPKVLPYLDIPLQHASDRILKLMR-RPGSGEQQLDFIERLREKCP-DAVLRTT 291 (430)
T ss_pred CCccEEEEccCCcccC-CHHHHHHHhhCCcccCceEeCCCCCCHHHHhhCC-CCCCHHHHHHHHHHHHHhCC-CCeEeEE
Confidence 21 223344556544 789999999985 66677789965 69999999 89999999999999999765 4889999
Q ss_pred EEEec-CCCHHHHHHHHHHHHHcCCcEEeeecCC-CCCCCCCCccccCCH----HHHHHHHHHHHHhhhhh
Q 017200 281 IMLGC-GETPDQVVSTMEKVRAAGVDVMTFGQYM-RPSKRHMPVSEYITP----EAFERYRALGMEMGFRY 345 (375)
Q Consensus 281 imvGl-GET~ee~~etl~~Lrelgvd~v~i~qYl-~P~~~~~~v~~~v~p----e~~~~l~~~a~~~gf~~ 345 (375)
+|+|| |||+|++.++++++++++++.++++.|. +|++....+...+.+ ++..+|.+++.++...+
T Consensus 292 ~I~G~PgET~e~~~~t~~fl~~~~~~~~~~~~~sp~pGT~~~~~~~~i~~~~~~~r~~~l~~~~~~~~~~~ 362 (430)
T TIGR01125 292 FIVGFPGETEEDFQELLDFVEEGQFDRLGAFTYSPEEGTDAFALPDQVPEEVKEERLERLMQLQQRISAKK 362 (430)
T ss_pred EEEECCCCCHHHHHHHHHHHHhcCCCEEeeeeccCCCCCccccCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999 9999999999999999999999998885 454443333333443 45667777766655544
No 49
>PRK14338 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=99.89 E-value=1.4e-21 Score=201.41 Aligned_cols=212 Identities=16% Similarity=0.282 Sum_probs=164.7
Q ss_pred EEEEeeeCCccCCCCcCCCCCCCCCC-CCCCcchHHHHHHHHHhcCCcEEEEEeeeCCCCC-c-ccHHHHHHHHHHHHHh
Q 017200 129 TATIMILGDTCTRGCRFCNVKTSRAP-PPPDPDEPTNVAEAIASWGLDYVVITSVDRDDLA-D-QGSGHFAQTVRKLKEL 205 (375)
Q Consensus 129 tatfm~i~d~C~~~C~FC~v~~~r~~-~~ld~eEi~~~a~al~~~G~~eIvLTsgdr~dl~-d-~G~~~~~~lir~Ik~~ 205 (375)
...|+.+++||+.+|+||.++..+++ ..+++++++++++.+.+.|+++|+|+|.+-..+. | .+..++.++++.|++.
T Consensus 155 ~~~~i~I~rGC~~~CsfC~~p~~~G~~rsr~~e~Il~ei~~l~~~G~keI~l~g~~~~~yG~d~~~~~~l~~Ll~~l~~~ 234 (459)
T PRK14338 155 VTVHVPIIYGCNMSCSYCVIPLRRGRERSRPLAEIVEEVRRIAARGAKEITLLGQIVDSYGHDLPGRPDLADLLEAVHEI 234 (459)
T ss_pred eEEEEEcccCCCCCCCcCCeeccCCCCccCCHHHHHHHHHHHHHCCCeEEEEeeecCCCcccccCChHHHHHHHHHHHhc
Confidence 67889999999999999999976543 3589999999999999999999999998643321 1 0134689999999874
Q ss_pred CCCc-EEE--eecCCCCCChHHHHHHHHc--Ccccccccccch-HHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCceEEE
Q 017200 206 KPNM-LIE--ALVPDFRGNNGCVREVAKS--GLNVFAHNIETV-EELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKT 279 (375)
Q Consensus 206 ~p~i-~Ie--~l~pd~~g~~e~l~~L~~a--Gldv~~hnlEtv-~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~tkt 279 (375)
+++ .|. ...|+.. +++.++.|++. |+..+..++|+. +++++.|+ |+++.+++++.++.+++..|. +.+.+
T Consensus 235 -~gi~~ir~~~~~p~~i-~~ell~~l~~~~~~~~~v~lglQSgsd~vLk~m~-R~~t~e~~~~~i~~lr~~~pg-i~i~~ 310 (459)
T PRK14338 235 -PGLERLRFLTSHPAWM-TDRLIHAVARLPKCCPHINLPVQAGDDEVLKRMR-RGYTVARYRELIARIREAIPD-VSLTT 310 (459)
T ss_pred -CCcceEEEEecChhhc-CHHHHHHHhcccccccceecCcccCCHHHHHhcc-CCCCHHHHHHHHHHHHHhCCC-CEEEE
Confidence 333 344 4456544 67889999885 467778889965 69999999 899999999999999997764 89999
Q ss_pred eEEEec-CCCHHHHHHHHHHHHHcCCcEEeeecCC-CCCCCCCCcccc----CCH----HHHHHHHHHHHHhhhh
Q 017200 280 SIMLGC-GETPDQVVSTMEKVRAAGVDVMTFGQYM-RPSKRHMPVSEY----ITP----EAFERYRALGMEMGFR 344 (375)
Q Consensus 280 ~imvGl-GET~ee~~etl~~Lrelgvd~v~i~qYl-~P~~~~~~v~~~----v~p----e~~~~l~~~a~~~gf~ 344 (375)
++|+|| |||++|+.++++++++++++.++++.|. +|.+....+... +.+ ++.+.|++++.++...
T Consensus 311 d~IvG~PgET~ed~~~ti~~l~~l~~~~v~i~~ysp~pGT~~~~~~~~~~~~v~~~~~~~R~~~l~~~~~~~~~~ 385 (459)
T PRK14338 311 DIIVGHPGETEEQFQRTYDLLEEIRFDKVHIAAYSPRPGTLAAEMEDDPALAVPPEEKQRRRRALEQLQEQIATE 385 (459)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHcCCCEeEEEecCCCCCChhhhCcCCccCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 999999 9999999999999999999999998886 453322212222 433 3556677777765543
No 50
>TIGR00089 RNA modification enzyme, MiaB family. This subfamily is aparrently a part of a larger superfamily of enzymes utilizing both a 4Fe4S cluster and S-adenosyl methionine (SAM) to initiate radical reactions. MiaB acts on a particular isoprenylated Adenine base of certain tRNAs causing thiolation at an aromatic carbon, and probably also transferring a methyl grouyp from SAM to the thiol. The particular substrate of the three other clades is unknown but may be very closely related.
Probab=99.89 E-value=7.6e-22 Score=201.34 Aligned_cols=215 Identities=19% Similarity=0.324 Sum_probs=168.8
Q ss_pred EEEEeeeCCccCCCCcCCCCCCCCCC-CCCCcchHHHHHHHHHhcCCcEEEEEeeeCCCC-Ccc-cHHHHHHHHHHHHHh
Q 017200 129 TATIMILGDTCTRGCRFCNVKTSRAP-PPPDPDEPTNVAEAIASWGLDYVVITSVDRDDL-ADQ-GSGHFAQTVRKLKEL 205 (375)
Q Consensus 129 tatfm~i~d~C~~~C~FC~v~~~r~~-~~ld~eEi~~~a~al~~~G~~eIvLTsgdr~dl-~d~-G~~~~~~lir~Ik~~ 205 (375)
+.+|+.+++||+.+|+||+++..++. ...++++++++++.+.+.|+++|+|++.+-..+ .|. +..++.++++.|++.
T Consensus 139 ~~~~i~~srGC~~~CsfC~~~~~~g~~r~r~~e~Vv~Ei~~l~~~g~~ei~l~~~~~~~yg~d~~~~~~l~~Ll~~l~~~ 218 (429)
T TIGR00089 139 TRAFLKIQEGCDKFCTYCIVPYARGRERSRPPEDILEEVKELVSKGVKEIVLLGQNVGAYGKDLKGETNLADLLRELSKI 218 (429)
T ss_pred eEEEEEHHhCcCCCCCcCceecccCCCCCCCHHHHHHHHHHHHHCCCceEEEEeeccccccCCCCCCcCHHHHHHHHhcC
Confidence 67888899999999999999876543 358999999999999999999999999874333 121 124588999999764
Q ss_pred CCC--cEEEeecCCCCCChHHHHHHHHcC--cccccccccch-HHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCceEEEe
Q 017200 206 KPN--MLIEALVPDFRGNNGCVREVAKSG--LNVFAHNIETV-EELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTS 280 (375)
Q Consensus 206 ~p~--i~Ie~l~pd~~g~~e~l~~L~~aG--ldv~~hnlEtv-~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~tkt~ 280 (375)
... +++..+.|+.. +++.++.++++| ...+..++|+. +++++.|+ |+++.++++++++.+++..|. +.+.++
T Consensus 219 ~g~~~i~~~~~~p~~i-~~ell~~m~~~~~~~~~l~igiES~s~~vLk~m~-R~~~~~~~~~~i~~lr~~~~~-i~i~~~ 295 (429)
T TIGR00089 219 DGIERIRFGSSHPDDV-TDDLIELIAENPKVCKHLHLPVQSGSDRILKRMN-RKYTREEYLDIVEKIRAKIPD-AAITTD 295 (429)
T ss_pred CCCCEEEECCCChhhc-CHHHHHHHHhCCCccCceeeccccCChHHHHhCC-CCCCHHHHHHHHHHHHHHCCC-CEEEee
Confidence 222 33434456433 789999999985 77788889975 59999999 899999999999999997654 889999
Q ss_pred EEEec-CCCHHHHHHHHHHHHHcCCcEEeeecCC-CCCCCCCC----ccccCCHHHHHHHHHHHHHhhhhhh
Q 017200 281 IMLGC-GETPDQVVSTMEKVRAAGVDVMTFGQYM-RPSKRHMP----VSEYITPEAFERYRALGMEMGFRYV 346 (375)
Q Consensus 281 imvGl-GET~ee~~etl~~Lrelgvd~v~i~qYl-~P~~~~~~----v~~~v~pe~~~~l~~~a~~~gf~~~ 346 (375)
+|+|| |||+|++.++++++++++++.++++.|. .|++.... +...+..++...|++++.+++..+.
T Consensus 296 ~IvG~PgET~ed~~~tl~~i~~~~~~~~~~~~~sp~pgT~~~~~~~~v~~~~~~~r~~~l~~~~~~~~~~~~ 367 (429)
T TIGR00089 296 IIVGFPGETEEDFEETLDLVEEVKFDKLHSFIYSPRPGTPAADMKDQVPEEVKKERLERLIALQKEISLEKN 367 (429)
T ss_pred EEEECCCCCHHHHHHHHHHHHhcCCCEeeccccCCCCCCchhhCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999 9999999999999999999999998885 34332222 2233344577888888888776654
No 51
>PRK14325 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=99.89 E-value=1.3e-21 Score=200.64 Aligned_cols=214 Identities=15% Similarity=0.247 Sum_probs=167.3
Q ss_pred EEEEeeeCCccCCCCcCCCCCCCCCC-CCCCcchHHHHHHHHHhcCCcEEEEEeeeCCCCCc----ccHHHHHHHHHHHH
Q 017200 129 TATIMILGDTCTRGCRFCNVKTSRAP-PPPDPDEPTNVAEAIASWGLDYVVITSVDRDDLAD----QGSGHFAQTVRKLK 203 (375)
Q Consensus 129 tatfm~i~d~C~~~C~FC~v~~~r~~-~~ld~eEi~~~a~al~~~G~~eIvLTsgdr~dl~d----~G~~~~~~lir~Ik 203 (375)
+..|+.+++||+.+|+||+++..++. ...++++++++++.+.+.|+++|+|++.+-..+.+ +...++.++++.|.
T Consensus 147 ~~~~i~isrGCp~~CsFC~~p~~~G~~~sr~~e~Iv~Ei~~l~~~g~~ei~l~d~~~~~y~~~~~~~~~~~l~~Ll~~l~ 226 (444)
T PRK14325 147 PSAFVSIMEGCDKYCTFCVVPYTRGEEVSRPVDDVLAEVAQLAEQGVREITLLGQNVNAYRGEGPDGEIADFAELLRLVA 226 (444)
T ss_pred ceEEEEhhhCCCCCCCccccCcccCCcccCCHHHHHHHHHHHHHCCCcEEEEEeeccccccCCCCCCCcchHHHHHHHHH
Confidence 67788889999999999999876543 35899999999999999999999999987433311 11346889999887
Q ss_pred HhCC--CcEEEeecCCCCCChHHHHHHHHcC--cccccccccc-hHHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCceEE
Q 017200 204 ELKP--NMLIEALVPDFRGNNGCVREVAKSG--LNVFAHNIET-VEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTK 278 (375)
Q Consensus 204 ~~~p--~i~Ie~l~pd~~g~~e~l~~L~~aG--ldv~~hnlEt-v~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~tk 278 (375)
+..+ .+++....|+.. +++.++.++++| +..+..++|+ ++++++.|+ |+++.++++++++.+++..| |+.+.
T Consensus 227 ~~~~~~~ir~~~~~p~~~-~~ell~~l~~~~~~~~~l~igiqSgs~~vLk~m~-R~~~~~~~~~~i~~lr~~~~-gi~v~ 303 (444)
T PRK14325 227 AIDGIERIRYTTSHPRDF-TDDLIEAYADLPKLVPFLHLPVQSGSDRILKAMN-RGHTALEYKSIIRKLRAARP-DIAIS 303 (444)
T ss_pred hcCCccEEEEccCCcccC-CHHHHHHHHcCCcccCceeccCCcCCHHHHHhCC-CCCCHHHHHHHHHHHHHHCC-CCEEE
Confidence 6422 244444556543 788999999875 7778888996 569999999 89999999999999999765 48999
Q ss_pred EeEEEec-CCCHHHHHHHHHHHHHcCCcEEeeecCC-CCCCCCCCc----cccCCHHHHHHHHHHHHHhhhhh
Q 017200 279 TSIMLGC-GETPDQVVSTMEKVRAAGVDVMTFGQYM-RPSKRHMPV----SEYITPEAFERYRALGMEMGFRY 345 (375)
Q Consensus 279 t~imvGl-GET~ee~~etl~~Lrelgvd~v~i~qYl-~P~~~~~~v----~~~v~pe~~~~l~~~a~~~gf~~ 345 (375)
+++|+|| |||++++.++++++++++++.++++.|. .|++....+ ...+..++.+.|++++.++...+
T Consensus 304 ~~~IvG~PgET~ed~~~tl~~i~~~~~~~~~~~~~sp~pGT~~~~~~~~v~~~~~~~r~~~l~~~~~~~~~~~ 376 (444)
T PRK14325 304 SDFIVGFPGETDEDFEATMKLIEDVGFDQSFSFIYSPRPGTPAADLPDDVPEEVKKERLQRLQALINQQQMAF 376 (444)
T ss_pred eeEEEECCCCCHHHHHHHHHHHHhcCCCeeeeeeccCCCCCchhhCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999 9999999999999999999999988885 454332222 22334457778888777655544
No 52
>PRK14333 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=99.89 E-value=7.3e-22 Score=202.79 Aligned_cols=214 Identities=16% Similarity=0.267 Sum_probs=167.0
Q ss_pred EEEEeeeCCccCCCCcCCCCCCCCCCC-CCCcchHHHHHHHHHhcCCcEEEEEeeeCCCCC-c--cc------HHHHHHH
Q 017200 129 TATIMILGDTCTRGCRFCNVKTSRAPP-PPDPDEPTNVAEAIASWGLDYVVITSVDRDDLA-D--QG------SGHFAQT 198 (375)
Q Consensus 129 tatfm~i~d~C~~~C~FC~v~~~r~~~-~ld~eEi~~~a~al~~~G~~eIvLTsgdr~dl~-d--~G------~~~~~~l 198 (375)
...|+.+++||+.+|+||+++..++.. +.++++++++++.+.+.|+++|+|+|.+-.++. | ++ ...|.++
T Consensus 148 ~~a~i~i~~GC~~~CsFC~ip~~rG~~rsr~~e~V~~Ei~~l~~~g~kei~l~~~~~~~yg~d~~~~~p~~~~~~~l~~L 227 (448)
T PRK14333 148 ITAWVNVIYGCNERCTYCVVPSVRGKEQSRTPEAIRAEIEELAAQGYKEITLLGQNIDAYGRDLPGTTPEGRHQHTLTDL 227 (448)
T ss_pred eeEEEEhhcCCCCCCCCCceecccCCCcccCHHHHHHHHHHHHHCCCcEEEEEecccchhcCCCCCccccccccccHHHH
Confidence 567889999999999999999766543 588999999999999999999999998644331 1 11 1368999
Q ss_pred HHHHHHhCCCcEEEe--ecCCCCCChHHHHHHHHc--Ccccccccccc-hHHHHHHhcCCCCCHHHHHHHHHHHHHhCCC
Q 017200 199 VRKLKELKPNMLIEA--LVPDFRGNNGCVREVAKS--GLNVFAHNIET-VEELQSAVRDHRANFKQSLDVLMMAKDYVPA 273 (375)
Q Consensus 199 ir~Ik~~~p~i~Ie~--l~pd~~g~~e~l~~L~~a--Gldv~~hnlEt-v~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~ 273 (375)
++.|.+.....+|.. +.|+.. +++.++.++++ |+..+..++|+ ++++++.|+ |+++.+++++.++.+++..|.
T Consensus 228 l~~i~~~~~~~rir~~~~~p~~~-~~eli~~~~~~~~~~~~l~igiQSgsd~vLk~m~-R~~t~e~~~~~i~~lr~~~p~ 305 (448)
T PRK14333 228 LYYIHDVEGIERIRFATSHPRYF-TERLIKACAELPKVCEHFHIPFQSGDNEILKAMA-RGYTHEKYRRIIDKIREYMPD 305 (448)
T ss_pred HHHHHhcCCCeEEEECCCChhhh-hHHHHHHHhcCCcccccccCCCccCCHHHHHhcC-CCCCHHHHHHHHHHHHHhCCC
Confidence 999876432223443 446543 67888888876 46667777896 569999999 899999999999999998775
Q ss_pred CceEEEeEEEec-CCCHHHHHHHHHHHHHcCCcEEeeecCC-CCCCCCCC----ccccCCHHHHHHHHHHHHHhhhhh
Q 017200 274 GTLTKTSIMLGC-GETPDQVVSTMEKVRAAGVDVMTFGQYM-RPSKRHMP----VSEYITPEAFERYRALGMEMGFRY 345 (375)
Q Consensus 274 Gl~tkt~imvGl-GET~ee~~etl~~Lrelgvd~v~i~qYl-~P~~~~~~----v~~~v~pe~~~~l~~~a~~~gf~~ 345 (375)
+.+.++||+|| |||+|++.++++++++++++.++++.|. +|++.... +...+..++.+.|++++.+....+
T Consensus 306 -i~i~~d~IvGfPgET~edf~~tl~~l~~~~~~~~~~~~~sp~pGT~~~~~~~~v~~~~~~~R~~~l~~~~~~~~~~~ 382 (448)
T PRK14333 306 -ASISADAIVGFPGETEAQFENTLKLVEEIGFDQLNTAAYSPRPGTPAALWDNQLSEEVKSDRLQRLNHLVEQKAAER 382 (448)
T ss_pred -cEEEeeEEEECCCCCHHHHHHHHHHHHHcCCCEEeeeeeecCCCCchhhCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 88999999999 9999999999999999999999998885 56443322 333345567788888887766544
No 53
>TIGR01578 MiaB-like-B MiaB-like tRNA modifying enzyme, archaeal-type. This clade is a member of a subfamily (TIGR00089) and spans the archaea and eukaryotes. The only archaeal miaB-like genes are in this clade, while eukaryotes have sequences described by this model as well as ones falling within the scope of the MiaB equivalog model.
Probab=99.88 E-value=3.4e-21 Score=196.32 Aligned_cols=215 Identities=16% Similarity=0.253 Sum_probs=163.9
Q ss_pred EEEEeeeCCccCCCCcCCCCCCCCCCC-CCCcchHHHHHHHHHhcCCcEEEEEeeeCCCC-CcccHHHHHHHHHHHHHhC
Q 017200 129 TATIMILGDTCTRGCRFCNVKTSRAPP-PPDPDEPTNVAEAIASWGLDYVVITSVDRDDL-ADQGSGHFAQTVRKLKELK 206 (375)
Q Consensus 129 tatfm~i~d~C~~~C~FC~v~~~r~~~-~ld~eEi~~~a~al~~~G~~eIvLTsgdr~dl-~d~G~~~~~~lir~Ik~~~ 206 (375)
+.+|+.+++||+++|+||+++..+++. ..++++++++++.+.+.|+++|+|+|+|...+ .|.+ .++.++++.|.+..
T Consensus 133 ~~~~i~isrGC~~~CsfC~ip~~~G~~rsr~~e~Vl~Ei~~l~~~G~~ei~l~g~d~~~yg~d~~-~~l~~Ll~~l~~i~ 211 (420)
T TIGR01578 133 LIEIIPINQGCLGNCSYCITKHARGKLASYPPEKIVEKARQLVAEGCKEIWITSQDTGAYGRDIG-SRLPELLRLITEIP 211 (420)
T ss_pred cEEEEEEccCCCCCCCCCccccCCCCcccCCHHHHHHHHHHHHHCCCeEEEEEeeccccccCCCC-cCHHHHHHHHHhCC
Confidence 678999999999999999999876543 58999999999999999999999999875544 2222 24777777776542
Q ss_pred C--CcEEEeecCCCC--CChHHHHHHHHcC-cccccccccc-hHHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCceEEEe
Q 017200 207 P--NMLIEALVPDFR--GNNGCVREVAKSG-LNVFAHNIET-VEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTS 280 (375)
Q Consensus 207 p--~i~Ie~l~pd~~--g~~e~l~~L~~aG-ldv~~hnlEt-v~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~tkt~ 280 (375)
. .+++..+.|... -+++.++.+...+ ...+..++|+ ++++++.|+ |+++.+++++.++.+++..| |+.+.++
T Consensus 212 ~~~~ir~~~~~p~~~~~~~~~l~~~~~~~~~~~~l~iglQSgsd~iL~~m~-R~~~~~~~~~~i~~i~~~~~-~i~i~~~ 289 (420)
T TIGR01578 212 GEFRLRVGMMNPKNVLEILDELANVYQHEKVYKFLHLPVQSGSDSVLKEMK-REYTVSDFEDIVDKFRERFP-DLTLSTD 289 (420)
T ss_pred CCcEEEEcCCCCCcccccCHHHHHHHhcccccCceEeCCccCCHHHHHhcC-CCCCHHHHHHHHHHHHHhCC-CCEEEee
Confidence 2 244544556321 1456666665444 3556667886 469999999 89999999999999999776 4899999
Q ss_pred EEEec-CCCHHHHHHHHHHHHHcCCcEEeeecCC-CCCCCCCCc---cccCCHHHHHHHHHHHHHhhhhhh
Q 017200 281 IMLGC-GETPDQVVSTMEKVRAAGVDVMTFGQYM-RPSKRHMPV---SEYITPEAFERYRALGMEMGFRYV 346 (375)
Q Consensus 281 imvGl-GET~ee~~etl~~Lrelgvd~v~i~qYl-~P~~~~~~v---~~~v~pe~~~~l~~~a~~~gf~~~ 346 (375)
||+|| |||++++.++++++++++++.++++.|. .|++....+ ...+..++.+.|++++.++...+.
T Consensus 290 ~IvG~PgET~ed~~~t~~~~~~~~~~~i~~~~~~p~pGT~~~~~~~v~~~~~~~R~~~l~~~~~~~~~~~~ 360 (420)
T TIGR01578 290 IIVGFPTETDDDFEETMELLRKYRPEKINITKFSPRPGTPAAKMKRIPTNIVKKRSKRLTKLYEQVLLEMR 360 (420)
T ss_pred EEEeCCCCCHHHHHHHHHHHHHhCCCEEEEEEeeCCCCCcccCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999 9999999999999999999999998885 454432222 222344578888888888766553
No 54
>PRK14334 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=99.88 E-value=2.6e-21 Score=198.33 Aligned_cols=215 Identities=18% Similarity=0.287 Sum_probs=166.8
Q ss_pred EEEEeeeCCccCCCCcCCCCCCCCCCC-CCCcchHHHHHHHHHhcCCcEEEEEeeeCCCCC-cc-cHHHHHHHHHHHHHh
Q 017200 129 TATIMILGDTCTRGCRFCNVKTSRAPP-PPDPDEPTNVAEAIASWGLDYVVITSVDRDDLA-DQ-GSGHFAQTVRKLKEL 205 (375)
Q Consensus 129 tatfm~i~d~C~~~C~FC~v~~~r~~~-~ld~eEi~~~a~al~~~G~~eIvLTsgdr~dl~-d~-G~~~~~~lir~Ik~~ 205 (375)
...|+.+++||+.+|+||.++..+++. ..++++++++++.+.+.|+++|+|+|.+-..+. |. +...+.++++.|.+.
T Consensus 138 ~~~~l~isrGC~~~CsfC~~p~~~g~~~sr~~e~Iv~Ei~~l~~~G~keI~l~g~~~~~yG~d~~~~~~~~~Ll~~l~~~ 217 (440)
T PRK14334 138 LSAHLTIMRGCNHHCTYCIVPTTRGPEVSRHPDLILRELELLKAAGVQEVTLLGQNVNSYGVDQPGFPSFAELLRLVGAS 217 (440)
T ss_pred eEEEEEeccCCCCCCcCCCcchhcCCCccCCHHHHHHHHHHHHHCCCeEEEEEeccccccccCCCCcCCHHHHHHHHHhc
Confidence 788999999999999999999765443 588999999999999999999999997633221 10 122477888888654
Q ss_pred C-CCcEEEeecCCCCCChHHHHHHHHc--Ccccccccccch-HHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeE
Q 017200 206 K-PNMLIEALVPDFRGNNGCVREVAKS--GLNVFAHNIETV-EELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSI 281 (375)
Q Consensus 206 ~-p~i~Ie~l~pd~~g~~e~l~~L~~a--Gldv~~hnlEtv-~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~tkt~i 281 (375)
. +.+++..+.|+.. +++.++.|+++ |+..+..++|+. +++++.|+ |+++.+++++.++.+++..|. +.+.+++
T Consensus 218 ~i~~ir~~~~~p~~i-~~ell~~l~~~~~g~~~l~igvQSgs~~vLk~m~-R~~~~~~~~~~v~~lr~~~~~-i~i~~d~ 294 (440)
T PRK14334 218 GIPRVKFTTSHPMNF-TDDVIAAMAETPAVCEYIHLPVQSGSDRVLRRMA-REYRREKYLERIAEIREALPD-VVLSTDI 294 (440)
T ss_pred CCcEEEEccCCcccC-CHHHHHHHHhcCcCCCeEEeccccCCHHHHHHhC-CCCCHHHHHHHHHHHHHhCCC-cEEEEeE
Confidence 2 2344444556543 78899999985 478888899965 69999999 899999999999999998665 7789999
Q ss_pred EEec-CCCHHHHHHHHHHHHHcCCcEEeeecCC-CCCCCCCCccccCC----HHHHHHHHHHHHHhhhhhh
Q 017200 282 MLGC-GETPDQVVSTMEKVRAAGVDVMTFGQYM-RPSKRHMPVSEYIT----PEAFERYRALGMEMGFRYV 346 (375)
Q Consensus 282 mvGl-GET~ee~~etl~~Lrelgvd~v~i~qYl-~P~~~~~~v~~~v~----pe~~~~l~~~a~~~gf~~~ 346 (375)
|+|| |||++++.++++++++++++.++++.|. +|++........+. .++.++|.+++.++...+.
T Consensus 295 IvG~PgEt~ed~~~tl~~i~~l~~~~i~~f~ysp~pGT~~~~~~~~v~~~~~~~r~~~l~~~~~~~~~~~~ 365 (440)
T PRK14334 295 IVGFPGETEEDFQETLSLYDEVGYDSAYMFIYSPRPGTPSYKHFQDLPREVKTERLQRLIEKQKEWSYRRN 365 (440)
T ss_pred EEECCCCCHHHHHHHHHHHHhcCCCEeeeeEeeCCCCChhHhccCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999 9999999999999999999999999885 45433222222333 4567788888777666554
No 55
>PRK06267 hypothetical protein; Provisional
Probab=99.85 E-value=1.8e-20 Score=186.96 Aligned_cols=219 Identities=16% Similarity=0.168 Sum_probs=154.8
Q ss_pred cChhhhhhhcCCCCcccccCCCCCCccEEEEeeeCCccC--CCCcCCCCCCCCCC------CCCCcchHHHHHHHHHhcC
Q 017200 102 LKLHTVCEEAKCPNLGECWSGGETGTATATIMILGDTCT--RGCRFCNVKTSRAP------PPPDPDEPTNVAEAIASWG 173 (375)
Q Consensus 102 ~~L~tvceeA~cpn~~ec~~~~~~~~~tatfm~i~d~C~--~~C~FC~v~~~r~~------~~ld~eEi~~~a~al~~~G 173 (375)
.+|..+++.|+-.+.. .||+. -...+.+..+++|+ ++|+||+++..+++ ..+++||+++.++.+.+.|
T Consensus 4 ~~~~~L~~~A~~ir~~-~fG~~---v~l~~~l~~S~~C~l~~~C~FC~~s~~~~~i~~~~~~~~s~eeI~eea~~~~~~G 79 (350)
T PRK06267 4 EEILENSIKAFKLTEK-HHGNI---VSLERALFLGWYCNLKGPCKFCYMSTQKDKIKDPLKARRRVESILAEAILMKRIG 79 (350)
T ss_pred hHHHHHHHHHHHHHHH-HcCCe---EEEEEeeeecCCCcCCCCCcCCCCcccCCccCccccccCCHHHHHHHHHHHHHcC
Confidence 3566667777666554 34432 11222355799999 99999999874321 1379999999999999999
Q ss_pred CcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCCCcEEEeecCCCCCChHHHHHHHHcCcccccccccch-HHHHHHhcC
Q 017200 174 LDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETV-EELQSAVRD 252 (375)
Q Consensus 174 ~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGldv~~hnlEtv-~rl~~~mr~ 252 (375)
++.++|+||.. +. ...+.++++.|++.. ...+.+..+-. +.+.+..+..+|+ .+++||. +++++.|+
T Consensus 80 v~~~~lsgG~~--~~---~~el~~i~e~I~~~~-~~~~~~s~G~~--d~~~~~~~~l~Gv---~g~~ET~~~~~~~~i~- 147 (350)
T PRK06267 80 WKLEFISGGYG--YT---TEEINDIAEMIAYIQ-GCKQYLNVGII--DFLNINLNEIEGV---VGAVETVNPKLHREIC- 147 (350)
T ss_pred CCEEEEecCCC--CC---HHHHHHHHHHHHHhh-CCceEeecccC--CHHHHhhccccCc---eeeeecCCHHHHHhhC-
Confidence 99999999965 22 234555555555432 22222222211 4455555555564 5789998 59999999
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcCCcEEeeecCCCCCCCCCCccccCCHHHHH
Q 017200 253 HRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQYMRPSKRHMPVSEYITPEAFE 332 (375)
Q Consensus 253 r~~s~~~~l~vl~~ak~~~p~Gl~tkt~imvGlGET~ee~~etl~~Lrelgvd~v~i~qYl~P~~~~~~v~~~v~pe~~~ 332 (375)
+++++++++++++.+++ .|+.+++++|+|+|||.+|+.++++.+++++++.++|..+ .|. +++|......++..+
T Consensus 148 ~~~s~ed~~~~l~~ak~---aGi~v~~g~IiGlgEt~ed~~~~l~~l~~l~~d~v~~~~L-~P~-pGTp~~~~~~~s~~e 222 (350)
T PRK06267 148 PGKPLDKIKEMLLKAKD---LGLKTGITIILGLGETEDDIEKLLNLIEELDLDRITFYSL-NPQ-KGTIFENKPSVTTLE 222 (350)
T ss_pred CCCCHHHHHHHHHHHHH---cCCeeeeeEEEeCCCCHHHHHHHHHHHHHcCCCEEEEEee-eEC-CCCcCCCCCCCCHHH
Confidence 48899999999999999 6899999999999999999999999999999999888544 463 345554443445566
Q ss_pred HHHHHHHHh
Q 017200 333 RYRALGMEM 341 (375)
Q Consensus 333 ~l~~~a~~~ 341 (375)
.++.+|..+
T Consensus 223 ~lr~ia~~R 231 (350)
T PRK06267 223 YMNWVSSVR 231 (350)
T ss_pred HHHHHHHHH
Confidence 666666553
No 56
>KOG2900 consensus Biotin synthase [Coenzyme transport and metabolism]
Probab=99.81 E-value=1.3e-19 Score=169.96 Aligned_cols=223 Identities=17% Similarity=0.296 Sum_probs=164.9
Q ss_pred ccCCCCCCccEEEEee-eCCccCCCCcCCCCCCCCC-C----CCCCcchHHHHHHHHHhcCCcEEEEEeeeCCCCCcccH
Q 017200 119 CWSGGETGTATATIMI-LGDTCTRGCRFCNVKTSRA-P----PPPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGS 192 (375)
Q Consensus 119 c~~~~~~~~~tatfm~-i~d~C~~~C~FC~v~~~r~-~----~~ld~eEi~~~a~al~~~G~~eIvLTsgdr~dl~d~G~ 192 (375)
.|++. ..-...|.|. -+.||+.+|+||+++.... . .-+..||+++.|+.+++.|-...++-+..||-... .
T Consensus 74 k~Hdp-~kVQqCTLlsIKtGGCsEDCkYCaQSSRy~TGvKA~klmk~DeVi~~Ak~AK~~GSTRFCmGaAWRD~~GR--k 150 (380)
T KOG2900|consen 74 KWHDP-TKVQQCTLLSIKTGGCSEDCKYCAQSSRYDTGVKAEKLMKVDEVIKEAKEAKRNGSTRFCMGAAWRDMKGR--K 150 (380)
T ss_pred hhCCc-cceeeeEEEEeecCCcccccchhhhhcccccchhHHHHhhHHHHHHHHHHHHhcCCceeecchhhhhhccc--h
Confidence 46643 2223567764 4889999999999985321 1 12789999999999999999999988877754322 2
Q ss_pred HHHHHHHHHHHHhC-CCcEEEeecCCCCCChHHHHHHHHcCcccccccccchHHHHHHhcCCCCCHHHHHHHHHHHHHhC
Q 017200 193 GHFAQTVRKLKELK-PNMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYV 271 (375)
Q Consensus 193 ~~~~~lir~Ik~~~-p~i~Ie~l~pd~~g~~e~l~~L~~aGldv~~hnlEtv~rl~~~mr~r~~s~~~~l~vl~~ak~~~ 271 (375)
..|-.+++.|++.. =++.+++-.+-. +.++..+|+++|+..|+||++|+.+.|++|- -.-+|+++|++|+.+++
T Consensus 151 ~~fk~IlE~ikevr~MgmEvCvTLGMv--~~qQAkeLKdAGLTAYNHNlDTSREyYskvI-tTRtYDdRL~Ti~nvr~-- 225 (380)
T KOG2900|consen 151 SAFKRILEMIKEVRDMGMEVCVTLGMV--DQQQAKELKDAGLTAYNHNLDTSREYYSKVI-TTRTYDDRLQTIKNVRE-- 225 (380)
T ss_pred hHHHHHHHHHHHHHcCCceeeeeeccc--cHHHHHHHHhccceecccCccchhhhhcccc-eecchHHHHHHHHHHHH--
Confidence 33555555555443 246666666655 7889999999999999999999999999988 47799999999999999
Q ss_pred CCCceEEEeEEEecCCCHHHHHHHHHHHHHcCC--cEEeeecCCCCCCCCCCccccCC--HHHHHHHHHHHHHhhhhhhc
Q 017200 272 PAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGV--DVMTFGQYMRPSKRHMPVSEYIT--PEAFERYRALGMEMGFRYVA 347 (375)
Q Consensus 272 p~Gl~tkt~imvGlGET~ee~~etl~~Lrelgv--d~v~i~qYl~P~~~~~~v~~~v~--pe~~~~l~~~a~~~gf~~~~ 347 (375)
.|+.++++.|+||||.++|.+-.+..|..+.. +.||| +-+-|. +++|+.+.+. -+--+.|+.+|.. +.|+
T Consensus 226 -aGikvCsGGIlGLGE~e~DriGlihtLatmp~HPESvPi-N~Lvai-kGTP~~d~~~k~l~i~e~lR~IaTA---RIvM 299 (380)
T KOG2900|consen 226 -AGIKVCSGGILGLGESEDDRIGLIHTLATMPPHPESVPI-NRLVAI-KGTPMADEKSKKLQIDEILRTIATA---RIVM 299 (380)
T ss_pred -hcceecccccccccccccceeeeeeeeccCCCCCccccc-ceEEec-CCcccchhhcccccHHHHHHHHhhh---heec
Confidence 68999999999999999999998888887763 56777 444452 4677765322 1234556666655 5667
Q ss_pred cchhhhhh
Q 017200 348 SGPMVRSS 355 (375)
Q Consensus 348 sgp~vrss 355 (375)
.-.++|-+
T Consensus 300 PKaiiRla 307 (380)
T KOG2900|consen 300 PKAIIRLA 307 (380)
T ss_pred hHHHHHHh
Confidence 66677654
No 57
>KOG2492 consensus CDK5 activator-binding protein [Signal transduction mechanisms]
Probab=99.77 E-value=5.9e-18 Score=167.41 Aligned_cols=208 Identities=18% Similarity=0.280 Sum_probs=163.5
Q ss_pred ccEEEEeeeCCccCCCCcCCCCCCCCCC-CCCCcchHHHHHHHHHhcCCcEEEEEeeeCCCCCc----------------
Q 017200 127 TATATIMILGDTCTRGCRFCNVKTSRAP-PPPDPDEPTNVAEAIASWGLDYVVITSVDRDDLAD---------------- 189 (375)
Q Consensus 127 ~~tatfm~i~d~C~~~C~FC~v~~~r~~-~~ld~eEi~~~a~al~~~G~~eIvLTsgdr~dl~d---------------- 189 (375)
.++.+|+.+-.||++-|+||.|+..|+. .+.+.+.|+++++.+.+.|+++|.|.|++-..+.|
T Consensus 218 ~s~tAFvSiMRGCdNMCtyCiVpftrGreRsrpi~siv~ev~~L~~qG~KeVTLLGQNVNSyrD~s~~~~~~a~~~~~~~ 297 (552)
T KOG2492|consen 218 SSTTAFVSIMRGCDNMCTYCIVPFTRGRERSRPIESIVEEVKRLAEQGVKEVTLLGQNVNSYRDNSAVQFSSAVPTNLSP 297 (552)
T ss_pred ccchhHHHHHhccccccceEEEeccCCcccCCchHHHHHHHHHHhhcCceeeeeecccccccccchhhhhccCCccccCC
Confidence 4467777778999999999999987654 35889999999999999999999999996322221
Q ss_pred ---------ccHHHHHHHHHHHHHhCCCcEEEeecC---CCCCChHHHHHHHHcC-ccccccc-cc-chHHHHHHhcCCC
Q 017200 190 ---------QGSGHFAQTVRKLKELKPNMLIEALVP---DFRGNNGCVREVAKSG-LNVFAHN-IE-TVEELQSAVRDHR 254 (375)
Q Consensus 190 ---------~G~~~~~~lir~Ik~~~p~i~Ie~l~p---d~~g~~e~l~~L~~aG-ldv~~hn-lE-tv~rl~~~mr~r~ 254 (375)
.|--.|+.+++.+....|+++|..-.| || .+|.|+.+.+-. .+..-|. .. ...++++.|+ |+
T Consensus 298 GFst~yK~K~gGl~Fa~LLd~vs~~~PemR~RFTSPHPKDf--pdevl~li~~rdnickqihlPAqSgds~vLE~mr-Rg 374 (552)
T KOG2492|consen 298 GFSTVYKPKQGGLRFAHLLDQVSRADPEMRIRFTSPHPKDF--PDEVLELIRDRDNICKQIHLPAQSGDSRVLEIMR-RG 374 (552)
T ss_pred CceeeecccCCCccHHHHHHHHhhhCcceEEEecCCCCCCC--hHHHHHHHHhCcchhheeeccccCCchHHHHHHH-cc
Confidence 122469999999999999999998877 56 567777776642 1222333 33 3459999999 99
Q ss_pred CCHHHHHHHHHHHHHhCCCCceEEEeEEEec-CCCHHHHHHHHHHHHHcCCcEEeeecC-CCCCC-CC----CCccccCC
Q 017200 255 ANFKQSLDVLMMAKDYVPAGTLTKTSIMLGC-GETPDQVVSTMEKVRAAGVDVMTFGQY-MRPSK-RH----MPVSEYIT 327 (375)
Q Consensus 255 ~s~~~~l~vl~~ak~~~p~Gl~tkt~imvGl-GET~ee~~etl~~Lrelgvd~v~i~qY-l~P~~-~~----~~v~~~v~ 327 (375)
++.+.+++...+++...|. +-.++++|.|| |||+||..+++-.|+++|.+++.+|.| ||..+ -| -.+.+.|+
T Consensus 375 ysreayl~lv~~Irs~iPg-VglssdfitgfCgeTeedhq~t~sLlrqVgYdv~~lFaysmR~kT~ay~r~~ddvpeeVK 453 (552)
T KOG2492|consen 375 YSREAYLELVAHIRSMIPG-VGLSSDFITGFCGETEEDHQYTVSLLRQVGYDVVFLFAYSMREKTRAYHRLKDDVPEEVK 453 (552)
T ss_pred CChHhhhhHHHHHHhhCCC-CcceeeeEecccCCChHHHHHHHHHHHHhccCeeeeEEeeecccchhhhhhcccccHHHH
Confidence 9999999999999999986 88999999999 999999999999999999999999999 45522 22 23455566
Q ss_pred HHHHHHHHHHH
Q 017200 328 PEAFERYRALG 338 (375)
Q Consensus 328 pe~~~~l~~~a 338 (375)
.++..+|..+=
T Consensus 454 nrrl~~Li~~F 464 (552)
T KOG2492|consen 454 NRRLFELITFF 464 (552)
T ss_pred HHHHHHHHHHH
Confidence 66666665543
No 58
>smart00729 Elp3 Elongator protein 3, MiaB family, Radical SAM. This superfamily contains MoaA, NifB, PqqE, coproporphyrinogen III oxidase, biotin synthase and MiaB families, and includes a representative in the eukaryotic elongator subunit, Elp-3. Some members of the family are methyltransferases.
Probab=99.75 E-value=6.8e-17 Score=145.05 Aligned_cols=176 Identities=17% Similarity=0.297 Sum_probs=140.9
Q ss_pred EEeeeCCccCCCCcCCCCCCCCC-CCCCCcchHHHHHHHHHhcC-----CcEEEEEeeeCCCCCcccHHHHHHHHHHHHH
Q 017200 131 TIMILGDTCTRGCRFCNVKTSRA-PPPPDPDEPTNVAEAIASWG-----LDYVVITSVDRDDLADQGSGHFAQTVRKLKE 204 (375)
Q Consensus 131 tfm~i~d~C~~~C~FC~v~~~r~-~~~ld~eEi~~~a~al~~~G-----~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~ 204 (375)
.++.++++|+.+|.||..+...+ ...++++++.+.++.+.+.| ++.+.++||+....+ ..++.++++.+++
T Consensus 3 ~~i~~t~~C~~~C~yC~~~~~~~~~~~~~~e~i~~~~~~~~~~~~~~~~~~~i~~~gg~~~~~~---~~~~~~~~~~~~~ 79 (216)
T smart00729 3 ALYIITRGCPRRCTFCSFPSARGKLRSRYLEALVREIELLAEKGEKEILVGTVFIGGGTPTLLS---PEQLEELLEAIRE 79 (216)
T ss_pred cEEEecCchhccCCcCCcCccccchhHHHHHHHHHHHHHHHhcccCCcceeEEEECCCCCCCCC---HHHHHHHHHHHHH
Confidence 45678999999999999987432 22378899999999887665 477888888765444 2357788888887
Q ss_pred hCC---CcEEEeecCCCCCChHHHHHHHHcCcccccccccch-HHHHHHhcCCCCCHHHHHHHHHHHHHhCCCC-ceEEE
Q 017200 205 LKP---NMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETV-EELQSAVRDHRANFKQSLDVLMMAKDYVPAG-TLTKT 279 (375)
Q Consensus 205 ~~p---~i~Ie~l~pd~~g~~e~l~~L~~aGldv~~hnlEtv-~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~G-l~tkt 279 (375)
..+ ...+.+.+-....+.+.++.|+++|++.+.+++|+. +++++.++ ++.+++++++.++.+++ .| +.+++
T Consensus 80 ~~~~~~~~~~~~~tn~~~~~~~~~~~l~~~~~~~i~isl~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~---~g~~~v~~ 155 (216)
T smart00729 80 ILGLADDVEITIETRPGTLTEELLEALKEAGVNRVSLGVQSGSDEVLKAIN-RGHTVEDVLEAVEKLRE---AGPIKVST 155 (216)
T ss_pred hCCCCCCeEEEEEeCcccCCHHHHHHHHHcCCCeEEEecccCCHHHHHHhc-CCCCHHHHHHHHHHHHH---hCCcceEE
Confidence 654 344444432122278999999999999999999975 58898898 68999999999999999 46 78999
Q ss_pred eEEEec-CCCHHHHHHHHHHHHHcCCcEEeeecCC
Q 017200 280 SIMLGC-GETPDQVVSTMEKVRAAGVDVMTFGQYM 313 (375)
Q Consensus 280 ~imvGl-GET~ee~~etl~~Lrelgvd~v~i~qYl 313 (375)
++|+|+ +++++++.+.++++++.+++.+.+.+|.
T Consensus 156 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 190 (216)
T smart00729 156 DLIVGLPGETEEDFEETLKLLKELGPDRVSIFPLS 190 (216)
T ss_pred eEEecCCCCCHHHHHHHHHHHHHcCCCeEEeeeee
Confidence 999999 6999999999999999999999987775
No 59
>PRK01254 hypothetical protein; Provisional
Probab=99.69 E-value=7.7e-16 Score=162.05 Aligned_cols=179 Identities=13% Similarity=0.161 Sum_probs=137.4
Q ss_pred EEEEeeeCCccCCCCcCCCCCCCCCC--CCCCcchHHHHHHHHHhc--CCcEEE--EEeeeCCCCC----c---------
Q 017200 129 TATIMILGDTCTRGCRFCNVKTSRAP--PPPDPDEPTNVAEAIASW--GLDYVV--ITSVDRDDLA----D--------- 189 (375)
Q Consensus 129 tatfm~i~d~C~~~C~FC~v~~~r~~--~~ld~eEi~~~a~al~~~--G~~eIv--LTsgdr~dl~----d--------- 189 (375)
..+++.+..||..+|+||+++..++. .+.++++|+++++.+.+. |+++++ |+|.+-..+. |
T Consensus 372 i~~sV~i~RGC~g~CSFCaI~~hqGr~irSRS~esIL~Ea~~L~~~~pGfKgii~DLgGptaN~YG~~c~d~~~~~~C~~ 451 (707)
T PRK01254 372 IRFSVNIMRGCFGGCSFCSITEHEGRIIQSRSEESIINEIEAIRDKVPGFTGVISDLGGPTANMYRLRCKSPRAEQTCRR 451 (707)
T ss_pred eEEEEEEccCCCCCCCccccccccCCeeeeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCcccccccccccccccccccc
Confidence 45678889999999999999987665 368999999999999974 999999 8888633221 1
Q ss_pred -------------ccHHHHHHHHHHHHHhCCCc-EEEeec--C-CCC-CChHHHHHHHHcCcc-ccccccc-chHHHHHH
Q 017200 190 -------------QGSGHFAQTVRKLKELKPNM-LIEALV--P-DFR-GNNGCVREVAKSGLN-VFAHNIE-TVEELQSA 249 (375)
Q Consensus 190 -------------~G~~~~~~lir~Ik~~~p~i-~Ie~l~--p-d~~-g~~e~l~~L~~aGld-v~~hnlE-tv~rl~~~ 249 (375)
..-..+.+++++|++. |++ +|.+.. | |+. .+++.++.+.+..+- .+...+| .++++++.
T Consensus 452 ~~Cl~P~~C~nL~~dh~~l~eLLrkLr~I-pGVKkVrI~SgiR~Dl~l~d~elIeel~~~hV~g~LkVppEH~Sd~VLk~ 530 (707)
T PRK01254 452 LSCVYPDICPHLDTDHEPTINLYRRARDL-KGIKKILIASGVRYDLAVEDPRYVKELVTHHVGGYLKIAPEHTEEGPLSK 530 (707)
T ss_pred ccccCcccccccCCCHHHHHHHHHHHHhC-CCceEEEEEcCCCccccccCHHHHHHHHHhCCccccccccccCCHHHHHH
Confidence 1125789999999863 554 444433 3 332 247788989885433 2233467 45799999
Q ss_pred hcCCC--CCHHHHHHHHHHHHHhCCCCceEEEeEEEec-CCCHHHHHHHHHHHHHcCCcEEee
Q 017200 250 VRDHR--ANFKQSLDVLMMAKDYVPAGTLTKTSIMLGC-GETPDQVVSTMEKVRAAGVDVMTF 309 (375)
Q Consensus 250 mr~r~--~s~~~~l~vl~~ak~~~p~Gl~tkt~imvGl-GET~ee~~etl~~Lrelgvd~v~i 309 (375)
|+ +. ++++++.++++.+++..|..+.+.+.+|+|| |||++|+.+++++|++++++...+
T Consensus 531 M~-Kp~~~~~e~F~e~f~rirk~~gk~q~LipyfIvGhPGeTeeDf~eLaefLkel~f~~eQV 592 (707)
T PRK01254 531 MM-KPGMGSYDRFKELFDKYSKEAGKEQYLIPYFISAHPGTTDEDMVNLALWLKKNRFRLDQV 592 (707)
T ss_pred hC-CCCcccHHHHHHHHHHHHHHCCCCeEEEEeEEEECCCCCHHHHHHHHHHHHHhCCCccee
Confidence 98 55 7899999999999998775577889999999 999999999999999999865444
No 60
>TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ. One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift.
Probab=99.69 E-value=1.3e-15 Score=157.43 Aligned_cols=169 Identities=11% Similarity=0.190 Sum_probs=135.4
Q ss_pred EeeeCCccCCCCcCCCCCCCC-C--CCCCCcchHHHHHHHHHhc--CCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhC
Q 017200 132 IMILGDTCTRGCRFCNVKTSR-A--PPPPDPDEPTNVAEAIASW--GLDYVVITSVDRDDLADQGSGHFAQTVRKLKELK 206 (375)
Q Consensus 132 fm~i~d~C~~~C~FC~v~~~r-~--~~~ld~eEi~~~a~al~~~--G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~ 206 (375)
.+..+.||+.+|+||.++... + -...+++.++++++.+.+. |+++|.+...+ +. ....++.++++.|++.
T Consensus 199 ~i~tsRGCp~~C~FC~~~~~~~g~~~r~rs~e~V~~Ei~~~~~~~~~~~~i~f~Dd~---f~-~~~~~~~~l~~~l~~~- 273 (472)
T TIGR03471 199 SLYTGRGCPSKCTFCLWPQTVGGHRYRTRSAESVIEEVKYALENFPEVREFFFDDDT---FT-DDKPRAEEIARKLGPL- 273 (472)
T ss_pred EEEecCCCCCCCCCCCCCccCCCCceEeCCHHHHHHHHHHHHHhcCCCcEEEEeCCC---CC-CCHHHHHHHHHHHhhc-
Confidence 345689999999999987421 1 1247899999999988875 78999885321 11 1245678888888764
Q ss_pred CCcEEEeecC-CCCCChHHHHHHHHcCcccccccccch-HHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEe
Q 017200 207 PNMLIEALVP-DFRGNNGCVREVAKSGLNVFAHNIETV-EELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLG 284 (375)
Q Consensus 207 p~i~Ie~l~p-d~~g~~e~l~~L~~aGldv~~hnlEtv-~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~tkt~imvG 284 (375)
++...+... ++ +.+.++.|+++|+..+..++|+. +++++.|+ ++.+.++..+.++.+++ .|+.+..++|+|
T Consensus 274 -~i~~~~~~~~~~--~~e~l~~l~~aG~~~v~iGiES~s~~~L~~~~-K~~~~~~~~~~i~~~~~---~Gi~v~~~~IiG 346 (472)
T TIGR03471 274 -GVTWSCNARANV--DYETLKVMKENGLRLLLVGYESGDQQILKNIK-KGLTVEIARRFTRDCHK---LGIKVHGTFILG 346 (472)
T ss_pred -CceEEEEecCCC--CHHHHHHHHHcCCCEEEEcCCCCCHHHHHHhc-CCCCHHHHHHHHHHHHH---CCCeEEEEEEEe
Confidence 344444332 33 78999999999999999999975 59999998 78999999999999999 589999999999
Q ss_pred c-CCCHHHHHHHHHHHHHcCCcEEeeecC
Q 017200 285 C-GETPDQVVSTMEKVRAAGVDVMTFGQY 312 (375)
Q Consensus 285 l-GET~ee~~etl~~Lrelgvd~v~i~qY 312 (375)
+ |||.|++.++++++.+++++.+.+..+
T Consensus 347 lPget~e~~~~ti~~~~~l~~~~~~~~~l 375 (472)
T TIGR03471 347 LPGETRETIRKTIDFAKELNPHTIQVSLA 375 (472)
T ss_pred CCCCCHHHHHHHHHHHHhcCCCceeeeec
Confidence 9 999999999999999999998877443
No 61
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=99.69 E-value=1.4e-15 Score=158.22 Aligned_cols=174 Identities=12% Similarity=0.215 Sum_probs=138.5
Q ss_pred EEEeeeCCccCCCCcCCCCCCC-CCCCCCCcchHHHHHHHHH-hcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCC
Q 017200 130 ATIMILGDTCTRGCRFCNVKTS-RAPPPPDPDEPTNVAEAIA-SWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKP 207 (375)
Q Consensus 130 atfm~i~d~C~~~C~FC~v~~~-r~~~~ld~eEi~~~a~al~-~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p 207 (375)
+..+..+.||+.+|+||.++.. +.-...+++.++++++.+. +.|++.+.++..+ +.....++.+++++|.+..|
T Consensus 194 ~~~i~tSRGCp~~C~FC~~~~~~~~~R~rs~e~Vv~Ei~~l~~~~gv~~~~~~Dd~----f~~~~~~~~~l~~~l~~~~~ 269 (497)
T TIGR02026 194 VAVPNFARGCPFTCNFCSQWKFWRRYRHRDPKKFVDEIEWLVRTHGVGFFILADEE----PTINRKKFQEFCEEIIARNP 269 (497)
T ss_pred eeeeeccCCCCCCCCCCCCCCCCceeecCCHHHHHHHHHHHHHHcCCCEEEEEecc----cccCHHHHHHHHHHHHhcCC
Confidence 3446679999999999998763 2223478999999998876 4799999886432 11124678899999887642
Q ss_pred -CcEEEeec-CC-CCCChHHHHHHHHcCcccccccccch-HHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEE
Q 017200 208 -NMLIEALV-PD-FRGNNGCVREVAKSGLNVFAHNIETV-EELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIML 283 (375)
Q Consensus 208 -~i~Ie~l~-pd-~~g~~e~l~~L~~aGldv~~hnlEtv-~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~tkt~imv 283 (375)
.+...+.+ .+ ...+.+.++.++++|+..+..++|+. +++++.|+ ++.+.++..+.++.+++ .|+.+..++|+
T Consensus 270 l~i~w~~~~r~~~i~~d~ell~~l~~aG~~~v~iGiES~~~~~L~~~~-K~~t~~~~~~ai~~l~~---~Gi~~~~~~I~ 345 (497)
T TIGR02026 270 ISVTWGINTRVTDIVRDADILHLYRRAGLVHISLGTEAAAQATLDHFR-KGTTTSTNKEAIRLLRQ---HNILSEAQFIT 345 (497)
T ss_pred CCeEEEEecccccccCCHHHHHHHHHhCCcEEEEccccCCHHHHHHhc-CCCCHHHHHHHHHHHHH---CCCcEEEEEEE
Confidence 34433332 22 22367899999999999999999975 59999999 79999999999999999 68999999999
Q ss_pred ec-CCCHHHHHHHHHHHHHcCCcEEeeec
Q 017200 284 GC-GETPDQVVSTMEKVRAAGVDVMTFGQ 311 (375)
Q Consensus 284 Gl-GET~ee~~etl~~Lrelgvd~v~i~q 311 (375)
|+ |||.|++.++++++.+++++.+.+..
T Consensus 346 G~P~et~e~~~~t~~~~~~l~~~~~~~~~ 374 (497)
T TIGR02026 346 GFENETDETFEETYRQLLDWDPDQANWLM 374 (497)
T ss_pred ECCCCCHHHHHHHHHHHHHcCCCceEEEE
Confidence 99 99999999999999999999888743
No 62
>cd01335 Radical_SAM Radical SAM superfamily. Enzymes of this family generate radicals by combining a 4Fe-4S cluster and S-adenosylmethionine (SAM) in close proximity. They are characterized by a conserved CxxxCxxC motif, which coordinates the conserved iron-sulfur cluster. Mechanistically, they share the transfer of a single electron from the iron-sulfur cluster to SAM, which leads to its reductive cleavage to methionine and a 5'-deoxyadenosyl radical, which, in turn, abstracts a hydrogen from the appropriately positioned carbon atom. Depending on the enzyme, SAM is consumed during this process or it is restored and reused. Radical SAM enzymes catalyze steps in metabolism, DNA repair, the biosynthesis of vitamins and coenzymes, and the biosynthesis of many antibiotics. Examples are biotin synthase (BioB), lipoyl synthase (LipA), pyruvate formate-lyase (PFL), coproporphyrinogen oxidase (HemN), lysine 2,3-aminomutase (LAM), anaerobic ribonucleotide reductase (ARR), and MoaA, an enzyme o
Probab=99.68 E-value=2.8e-15 Score=132.52 Aligned_cols=172 Identities=19% Similarity=0.335 Sum_probs=137.8
Q ss_pred eeCCccCCCCcCCCCCCCCCCCCCCc---chHHHHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCCCcE
Q 017200 134 ILGDTCTRGCRFCNVKTSRAPPPPDP---DEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNML 210 (375)
Q Consensus 134 ~i~d~C~~~C~FC~v~~~r~~~~ld~---eEi~~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p~i~ 210 (375)
..+++|+.+|.||............. +++...+......|...+.++||+.-..+ ++.++++.+++..+++.
T Consensus 2 ~~~~~C~~~C~fC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ggep~~~~-----~~~~~i~~~~~~~~~~~ 76 (204)
T cd01335 2 ELTRGCNLNCGFCSNPASKGRGPESPPEIEEILDIVLEAKERGVEVVILTGGEPLLYP-----ELAELLRRLKKELPGFE 76 (204)
T ss_pred ccCCccCCcCCCCCCCCCCCCCccccccHHHHHHHHHHHHhcCceEEEEeCCcCCccH-----hHHHHHHHHHhhCCCce
Confidence 35789999999999987543322222 46777777788889999999888654322 68899999998767777
Q ss_pred EEeecCCCCCChHHHHHHHHcCcccccccccchH-HHHHHhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEec-CCC
Q 017200 211 IEALVPDFRGNNGCVREVAKSGLNVFAHNIETVE-ELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGC-GET 288 (375)
Q Consensus 211 Ie~l~pd~~g~~e~l~~L~~aGldv~~hnlEtv~-rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~tkt~imvGl-GET 288 (375)
+.+.+-...-+.+.++.|+++|++.+.+++|+.+ ..+..+.....+++++++.++.+++. |+.+.+++|+|+ +++
T Consensus 77 ~~i~T~~~~~~~~~~~~l~~~g~~~i~i~le~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~---~~~~~~~~i~g~~~~~ 153 (204)
T cd01335 77 ISIETNGTLLTEELLKELKELGLDGVGVSLDSGDEEVADKIRGSGESFKERLEALKELREA---GLGLSTTLLVGLGDED 153 (204)
T ss_pred EEEEcCcccCCHHHHHHHHhCCCceEEEEcccCCHHHHHHHhcCCcCHHHHHHHHHHHHHc---CCCceEEEEEecCCCh
Confidence 7776654322689999999999999999999875 77777753478999999999999994 788999999999 556
Q ss_pred HHHHHHHHHHHHHcC-CcEEeeecCC
Q 017200 289 PDQVVSTMEKVRAAG-VDVMTFGQYM 313 (375)
Q Consensus 289 ~ee~~etl~~Lrelg-vd~v~i~qYl 313 (375)
.+++.++++.+.+.+ ++.+.+.+|.
T Consensus 154 ~~~~~~~~~~l~~~~~~~~~~~~~~~ 179 (204)
T cd01335 154 EEDDLEELELLAEFRSPDRVSLFRLL 179 (204)
T ss_pred hHHHHHHHHHHHhhcCcchhhhhhhc
Confidence 699999999999998 9999987775
No 63
>PRK08207 coproporphyrinogen III oxidase; Provisional
Probab=99.67 E-value=2.3e-15 Score=156.30 Aligned_cols=228 Identities=17% Similarity=0.250 Sum_probs=159.1
Q ss_pred EEEEeeeCCccCCCCcCCCCCCCC--CCCCC---CcchHHHHHHHHHh------cCCcEEEEEeeeCCCCCcccHHHHHH
Q 017200 129 TATIMILGDTCTRGCRFCNVKTSR--APPPP---DPDEPTNVAEAIAS------WGLDYVVITSVDRDDLADQGSGHFAQ 197 (375)
Q Consensus 129 tatfm~i~d~C~~~C~FC~v~~~r--~~~~l---d~eEi~~~a~al~~------~G~~eIvLTsgdr~dl~d~G~~~~~~ 197 (375)
..-|+-+ -.|+.+|.||+++... +...+ -.+.++++++.+.+ .++..|.+.||+..-++ .+.+.+
T Consensus 164 ~sLYihI-PFC~~~C~YCsf~s~~~~~~~~~~~~Y~~aL~~EI~~~~~~~~~~~~~v~tIyfGGGTPt~L~---~~~L~~ 239 (488)
T PRK08207 164 VSIYIGI-PFCPTRCLYCSFPSYPIKGYKGLVEPYLEALHYEIEEIGKYLKEKGLKITTIYFGGGTPTSLT---AEELER 239 (488)
T ss_pred eEEEEec-CCCCCcCCCCCCccccCCCCcchHHHHHHHHHHHHHHHHhhhcccCCceeEEEEeCCCccCCC---HHHHHH
Confidence 3444433 4799999999998641 11111 12333444443321 25678888888755454 567888
Q ss_pred HHHHHHHhCCC------cEEEeecCCCCCChHHHHHHHHcCcccccccccchH-HHHHHhcCCCCCHHHHHHHHHHHHHh
Q 017200 198 TVRKLKELKPN------MLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETVE-ELQSAVRDHRANFKQSLDVLMMAKDY 270 (375)
Q Consensus 198 lir~Ik~~~p~------i~Ie~l~pd~~g~~e~l~~L~~aGldv~~hnlEtv~-rl~~~mr~r~~s~~~~l~vl~~ak~~ 270 (375)
+++.|++.+|+ +.+++..|+.. +.+.++.|+++|++.+.+|+|+.+ ++++.|+ |++++++.++.++.+++
T Consensus 240 Ll~~i~~~f~~~~~~~EiTvE~grPd~i-t~e~L~~Lk~~Gv~RISIGvQS~~d~vLk~ig-R~ht~e~v~~ai~~ar~- 316 (488)
T PRK08207 240 LLEEIYENFPDVKNVKEFTVEAGRPDTI-TEEKLEVLKKYGVDRISINPQTMNDETLKAIG-RHHTVEDIIEKFHLARE- 316 (488)
T ss_pred HHHHHHHhccccCCceEEEEEcCCCCCC-CHHHHHHHHhcCCCeEEEcCCcCCHHHHHHhC-CCCCHHHHHHHHHHHHh-
Confidence 88888876642 34455567655 799999999999999999999864 9999998 89999999999999999
Q ss_pred CCCCc-eEEEeEEEec-CCCHHHHHHHHHHHHHcCCcEEeeecCCCCCCCCCCcc----cc--CCHHH----HHHHHHHH
Q 017200 271 VPAGT-LTKTSIMLGC-GETPDQVVSTMEKVRAAGVDVMTFGQYMRPSKRHMPVS----EY--ITPEA----FERYRALG 338 (375)
Q Consensus 271 ~p~Gl-~tkt~imvGl-GET~ee~~etl~~Lrelgvd~v~i~qYl~P~~~~~~v~----~~--v~pe~----~~~l~~~a 338 (375)
.|+ .++.++|+|+ |||.+++.++++.+.+++++.+++..+. + .+++++. .+ ...++ ++...+..
T Consensus 317 --~Gf~~In~DLI~GLPgEt~ed~~~tl~~l~~L~pd~isv~~L~-i-~~gT~l~~~~~~~~~~~~~~~~~m~~~a~~~l 392 (488)
T PRK08207 317 --MGFDNINMDLIIGLPGEGLEEVKHTLEEIEKLNPESLTVHTLA-I-KRASRLTENKEKYKVADREEIEKMMEEAEEWA 392 (488)
T ss_pred --CCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhcCcCEEEEEece-E-cCCChHHHhcCcCCCcCHHHHHHHHHHHHHHH
Confidence 577 7999999999 9999999999999999999999997663 2 1222322 11 22333 34445556
Q ss_pred HHhhhhhh-------ccchhhhhhcch-hHHHHHHHH
Q 017200 339 MEMGFRYV-------ASGPMVRSSYKV-VGWCYYLIF 367 (375)
Q Consensus 339 ~~~gf~~~-------~sgp~vrssy~a-~~~~~~~~~ 367 (375)
.++||... +.|.+--|.|-. |...+-|+.
T Consensus 393 ~~~Gy~~Yylyrqk~~~~n~E~~~ya~~g~~~~~N~~ 429 (488)
T PRK08207 393 KELGYVPYYLYRQKNMLGNLENVGYAKPGKESIYNIQ 429 (488)
T ss_pred HHcCCHhhhhhhccccccccceecccCCCcchhhHHH
Confidence 66788653 556565566654 344555554
No 64
>PF04055 Radical_SAM: Radical SAM superfamily; InterPro: IPR007197 Radical SAM proteins catalyze diverse reactions, including unusual methylations, isomerization, sulphur insertion, ring formation, anaerobic oxidation and protein radical formation. Evidence exists that these proteins generate a radical species by reductive cleavage of S:-adenosylmethionine (SAM) through an unusual Fe-S centre [, ].; GO: 0003824 catalytic activity, 0051536 iron-sulfur cluster binding; PDB: 2A5H_D 3T7V_A 3C8F_A 3CB8_A 2FB2_A 2FB3_A 3CIX_A 3IIX_A 3IIZ_A 3CIW_A ....
Probab=99.66 E-value=1.1e-15 Score=131.92 Aligned_cols=157 Identities=18% Similarity=0.331 Sum_probs=123.2
Q ss_pred eeCCccCCCCcCCCCCCC--CC-CCCCCcchHHHHHHHH-HhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhC-CC
Q 017200 134 ILGDTCTRGCRFCNVKTS--RA-PPPPDPDEPTNVAEAI-ASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELK-PN 208 (375)
Q Consensus 134 ~i~d~C~~~C~FC~v~~~--r~-~~~ld~eEi~~~a~al-~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~-p~ 208 (375)
..+++|+.+|.||..+.. .. ...++++++++.++.+ ...|.+.+.++||+....++ +.+.+..+.+.. +.
T Consensus 2 ~~~~~C~~~C~fC~~~~~~~~~~~~~~~~e~i~~~~~~~~~~~~~~~i~~~~gep~~~~~-----~~~~~~~~~~~~~~~ 76 (166)
T PF04055_consen 2 ETTRGCNLNCSFCYYPRSRRKNKPREMSPEEILEEIKELKQDKGVKEIFFGGGEPTLHPD-----FIELLELLRKIKKRG 76 (166)
T ss_dssp EEESEESS--TTTSTTTTCCTCGCEECHHHHHHHHHHHHHHHTTHEEEEEESSTGGGSCH-----HHHHHHHHHHCTCTT
T ss_pred EECcCcCccCCCCCCCccCCCcccccCCHHHHHHHHHHHhHhcCCcEEEEeecCCCcchh-----HHHHHHHHHHhhccc
Confidence 468999999999999974 21 2248999999999999 68898888888776443333 566666666542 56
Q ss_pred cEEEeecCCCCCChHHHHHHHHcCcccccccccchH-H-HHHHhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEec-
Q 017200 209 MLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETVE-E-LQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGC- 285 (375)
Q Consensus 209 i~Ie~l~pd~~g~~e~l~~L~~aGldv~~hnlEtv~-r-l~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~tkt~imvGl- 285 (375)
+.+.+.+....-+.+.++.++++|++.+..++|+.+ + +.+.++ ++.++++.++.++.+++ .|+.....+|+|+
T Consensus 77 ~~i~~~t~~~~~~~~~l~~l~~~~~~~i~~~l~s~~~~~~~~~~~-~~~~~~~~~~~l~~l~~---~g~~~~~~~i~~~~ 152 (166)
T PF04055_consen 77 IRISINTNGTLLDEELLDELKKLGVDRIRISLESLDEESVLRIIN-RGKSFERVLEALERLKE---AGIPRVIIFIVGLP 152 (166)
T ss_dssp EEEEEEEESTTHCHHHHHHHHHTTCSEEEEEEBSSSHHHHHHHHS-STSHHHHHHHHHHHHHH---TTSETEEEEEEEBT
T ss_pred cceeeeccccchhHHHHHHHHhcCccEEecccccCCHHHhhhhhc-CCCCHHHHHHHHHHHHH---cCCCcEEEEEEEeC
Confidence 777776665543589999999999999999999875 6 888888 78999999999999999 5676467777777
Q ss_pred CCCHHHHHHHHHHH
Q 017200 286 GETPDQVVSTMEKV 299 (375)
Q Consensus 286 GET~ee~~etl~~L 299 (375)
|||++|+.++++++
T Consensus 153 ~~~~~e~~~~~~~i 166 (166)
T PF04055_consen 153 GENDEEIEETIRFI 166 (166)
T ss_dssp TTSHHHHHHHHHHH
T ss_pred CCCHHHHHHHhCcC
Confidence 99999999999875
No 65
>PRK00955 hypothetical protein; Provisional
Probab=99.66 E-value=2.3e-15 Score=158.74 Aligned_cols=185 Identities=12% Similarity=0.186 Sum_probs=128.8
Q ss_pred EEEEeeeCCccCCCCcCCCCCCCCCCC--CCCcchHHHHHHHHHhc-CCcEEE--EEeeeCCCCC---------------
Q 017200 129 TATIMILGDTCTRGCRFCNVKTSRAPP--PPDPDEPTNVAEAIASW-GLDYVV--ITSVDRDDLA--------------- 188 (375)
Q Consensus 129 tatfm~i~d~C~~~C~FC~v~~~r~~~--~ld~eEi~~~a~al~~~-G~~eIv--LTsgdr~dl~--------------- 188 (375)
..+.+.+++||..+|+||+++..++.. +.++++|+++++.+.+. |+++++ |+|.+-.-+.
T Consensus 292 i~~sI~i~RGC~g~CSFCaIp~~rGr~~rSRs~esIv~Evk~L~~~~gfkg~I~DlgGptan~Yg~~c~~~~~~~~c~~~ 371 (620)
T PRK00955 292 VKFSITSHRGCFGGCSFCAITFHQGRFIQSRSQESILREAKELTEMPDFKGYIHDVGGPTANFRKMACKKQLKCGACKNK 371 (620)
T ss_pred EEEEEEeeCCCCCCCCCCCeecccCCcceecCHHHHHHHHHHHHhccCCeEEEEeCCCCCcccccccccccccccccccc
Confidence 345567899999999999999876553 69999999999999887 888774 2232211110
Q ss_pred -----------cccHHHHHHHHHHHHHhCCCc-EEEeecC---CCC---CChHHHHHHHHcCcc-cccccccc-hHHHHH
Q 017200 189 -----------DQGSGHFAQTVRKLKELKPNM-LIEALVP---DFR---GNNGCVREVAKSGLN-VFAHNIET-VEELQS 248 (375)
Q Consensus 189 -----------d~G~~~~~~lir~Ik~~~p~i-~Ie~l~p---d~~---g~~e~l~~L~~aGld-v~~hnlEt-v~rl~~ 248 (375)
+..-..+.+++++|++. |++ ++.+.++ |+. .+.+.++.|.+..+. .+...+|+ ++++++
T Consensus 372 ~clfp~~c~nl~~d~~~l~~LLr~l~~l-~gvkrv~isSGIR~D~l~~~~~~~~l~eL~~~~vsg~L~IapESgSd~VLk 450 (620)
T PRK00955 372 QCLFPKPCKNLDVDHKEYLELLRKVRKL-PGVKKVFIRSGIRYDYLLHDKNDEFFEELCEHHVSGQLKVAPEHISDRVLK 450 (620)
T ss_pred ccccCccccccCcChHHHHHHHHHHhcc-CCceEEEeecceeccccccCCcHHHHHHHHHHhcCCCceeCcCCCChHHHH
Confidence 01124689999999764 443 3332221 221 134578888775332 34556786 569999
Q ss_pred HhcCCCCCHHHHHHHHHHHHHhCCC-Cc--eEEEeEEEec-CCCHHHHHHHHHHHHHcCCcEEeeecCC-CCC
Q 017200 249 AVRDHRANFKQSLDVLMMAKDYVPA-GT--LTKTSIMLGC-GETPDQVVSTMEKVRAAGVDVMTFGQYM-RPS 316 (375)
Q Consensus 249 ~mr~r~~s~~~~l~vl~~ak~~~p~-Gl--~tkt~imvGl-GET~ee~~etl~~Lrelgvd~v~i~qYl-~P~ 316 (375)
.|+ +. +.+.+.+.++.+.++.+. |+ .+.++||+|| |||++|+.++++++++++++.+.++.|. .|.
T Consensus 451 ~M~-K~-~~~~~~~f~~~~~~i~~~~G~~~~I~~yfIvGfPGETeEDf~et~eflkel~~~~~qV~~fTP~PG 521 (620)
T PRK00955 451 LMG-KP-SREVYDKFVKKFDRINKKLGKKQYLVPYLMSSHPGSTLEDAIELAEYTKDLGYQPEQVQDFYPTPG 521 (620)
T ss_pred HhC-CC-CHHHHHHHHHHHHHhhhhcCCCccEEEEEEEECCCCCHHHHHHHHHHHHHcCCCcceeeeeecCCC
Confidence 998 44 656666666555554433 33 4899999999 9999999999999999999998887664 453
No 66
>PRK08599 coproporphyrinogen III oxidase; Provisional
Probab=99.65 E-value=3.2e-15 Score=150.26 Aligned_cols=216 Identities=14% Similarity=0.192 Sum_probs=151.4
Q ss_pred EEEeeeCCccCCCCcCCCCCCC--CCC-CCCCcchHHHHHHHHHhc---CCcEEEEEeeeCCCCCcccHHHHHHHHHHHH
Q 017200 130 ATIMILGDTCTRGCRFCNVKTS--RAP-PPPDPDEPTNVAEAIASW---GLDYVVITSVDRDDLADQGSGHFAQTVRKLK 203 (375)
Q Consensus 130 atfm~i~d~C~~~C~FC~v~~~--r~~-~~ld~eEi~~~a~al~~~---G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik 203 (375)
.-|+-+- .|+..|.||.++.. ++. ....++.++++++.+... +++.|.+.||+...++ ..++.++++.|+
T Consensus 3 ~lYihiP-fC~~~C~yC~~~~~~~~~~~~~~y~~~l~~Ei~~~~~~~~~~i~~i~~gGGtpt~l~---~~~l~~ll~~i~ 78 (377)
T PRK08599 3 SAYIHIP-FCEHICYYCDFNKVFIKNQPVDEYLDALIKEMNTYAIRPFDKLKTIYIGGGTPTALS---AEQLERLLTAIH 78 (377)
T ss_pred eEEEEeC-CcCCCCCCCCCeeeccCccCHHHHHHHHHHHHHHhhhcCCCceeEEEeCCCCcccCC---HHHHHHHHHHHH
Confidence 3455555 49999999998853 221 113456677777666554 4677777666543333 567889999998
Q ss_pred HhCC---CcEEEe-ecCCCCCChHHHHHHHHcCcccccccccch-HHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCce-E
Q 017200 204 ELKP---NMLIEA-LVPDFRGNNGCVREVAKSGLNVFAHNIETV-EELQSAVRDHRANFKQSLDVLMMAKDYVPAGTL-T 277 (375)
Q Consensus 204 ~~~p---~i~Ie~-l~pd~~g~~e~l~~L~~aGldv~~hnlEtv-~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~-t 277 (375)
+.++ .+.+.+ ..|+.. +.+.++.|+++|++.+..++|+. +++++.|+ |++++++.++.++.+++ .|+. +
T Consensus 79 ~~~~~~~~~eit~e~~p~~l-~~e~l~~l~~~G~~rvsiGvqS~~~~~l~~l~-r~~~~~~~~~~i~~l~~---~g~~~v 153 (377)
T PRK08599 79 RNLPLSGLEEFTFEANPGDL-TKEKLQVLKDSGVNRISLGVQTFNDELLKKIG-RTHNEEDVYEAIANAKK---AGFDNI 153 (377)
T ss_pred HhCCCCCCCEEEEEeCCCCC-CHHHHHHHHHcCCCEEEEecccCCHHHHHHcC-CCCCHHHHHHHHHHHHH---cCCCcE
Confidence 8653 223332 345543 78999999999999999999986 59999999 89999999999999999 4665 7
Q ss_pred EEeEEEec-CCCHHHHHHHHHHHHHcCCcEEeeecCC-CCCCCCC--------Ccc-ccCCHHHHHHHHHHHHHhhhhhh
Q 017200 278 KTSIMLGC-GETPDQVVSTMEKVRAAGVDVMTFGQYM-RPSKRHM--------PVS-EYITPEAFERYRALGMEMGFRYV 346 (375)
Q Consensus 278 kt~imvGl-GET~ee~~etl~~Lrelgvd~v~i~qYl-~P~~~~~--------~v~-~~v~pe~~~~l~~~a~~~gf~~~ 346 (375)
+.++|+|+ |||.+++.++++.+.+++++.+++..+. .|.+... ++. .....+.++...+...+.||...
T Consensus 154 ~~dli~GlPgqt~~~~~~~l~~~~~l~~~~i~~y~l~~~pgT~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~Gy~~~ 233 (377)
T PRK08599 154 SIDLIYALPGQTIEDFKESLAKALALDIPHYSAYSLILEPKTVFYNLMRKGKLRLPGEDLEAEMYEYLMDEMEAHGFHQY 233 (377)
T ss_pred EEeeecCCCCCCHHHHHHHHHHHHccCCCEEeeeceeecCCChhHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHcCCcEe
Confidence 89999999 9999999999999999999998886553 3422110 000 00112234445556666788766
Q ss_pred ccchhhhh
Q 017200 347 ASGPMVRS 354 (375)
Q Consensus 347 ~sgp~vrs 354 (375)
...-++|.
T Consensus 234 ~~~~fa~~ 241 (377)
T PRK08599 234 EISNFAKP 241 (377)
T ss_pred eeeeeeCC
Confidence 54445554
No 67
>TIGR01212 radical SAM protein, TIGR01212 family. This uncharacterized protein family shows significant similarity to TIGR01211, a longer protein that is a histone acetyltransferase at its C-terminus and is a subunit of RNA polymerase II (in yeast). This family lacks the GNAT acetyltransferase domain.
Probab=99.65 E-value=1.1e-14 Score=142.81 Aligned_cols=178 Identities=14% Similarity=0.181 Sum_probs=128.3
Q ss_pred hhcCCCCcccccCCCCCCccEEEEeeeCCccCCCCcCCCCCCCCCCC---CCCcchHHHHHH----HHHhcCCcEEEEEe
Q 017200 109 EEAKCPNLGECWSGGETGTATATIMILGDTCTRGCRFCNVKTSRAPP---PPDPDEPTNVAE----AIASWGLDYVVITS 181 (375)
Q Consensus 109 eeA~cpn~~ec~~~~~~~~~tatfm~i~d~C~~~C~FC~v~~~r~~~---~ld~eEi~~~a~----al~~~G~~eIvLTs 181 (375)
....|||+.-.-| ..+|.||+...+..-. ..+.++|.+.++ .....+..-|.++|
T Consensus 24 ~g~~cpnrdg~~~------------------~~gC~FC~~~~~~~~~~~~~~~~~~i~~qi~~~~~~~~~~~~~~iyf~g 85 (302)
T TIGR01212 24 GGFSCPNRDGTKG------------------RGGCTFCNDASRPIFADEYTQARIPIKEQIKKQMKKYKKDKKFIAYFQA 85 (302)
T ss_pred CCCCCCCCCCCCC------------------CCCcccCCCCCCccccccccccCCCHHHHHHHHHHHhhccCEEEEEEEC
Confidence 4567999863222 4689999986543111 123344443333 23333333378888
Q ss_pred eeCCCCCcccHHHHHHHHHHHHHhCCC-cEEEe-ecCCCCCChHHHH---HHHHcCcc-cccccccch-HHHHHHhcCCC
Q 017200 182 VDRDDLADQGSGHFAQTVRKLKELKPN-MLIEA-LVPDFRGNNGCVR---EVAKSGLN-VFAHNIETV-EELQSAVRDHR 254 (375)
Q Consensus 182 gdr~dl~d~G~~~~~~lir~Ik~~~p~-i~Ie~-l~pd~~g~~e~l~---~L~~aGld-v~~hnlEtv-~rl~~~mr~r~ 254 (375)
|+...++ .+++.++++.+++ .|. +.+.+ ..|+.. +.+.++ .++++|++ .+..++|+. +++++.|+ |+
T Consensus 86 gt~t~l~---~~~L~~l~~~i~~-~~~~~~isi~trpd~l-~~e~l~~L~~l~~~G~~~~i~lGlQS~~d~~L~~i~-Rg 159 (302)
T TIGR01212 86 YTNTYAP---VEVLKEMYEQALS-YDDVVGLSVGTRPDCV-PDEVLDLLAEYVERGYEVWVELGLQTAHDKTLKKIN-RG 159 (302)
T ss_pred CCcCCCC---HHHHHHHHHHHhC-CCCEEEEEEEecCCcC-CHHHHHHHHHhhhCCceEEEEEccCcCCHHHHHHHc-Cc
Confidence 8866565 6788899998887 454 23333 246644 555444 45567985 588899976 59999999 89
Q ss_pred CCHHHHHHHHHHHHHhCCCCceEEEeEEEec-CCCHHHHHHHHHHHHHcCCcEEeeecCC
Q 017200 255 ANFKQSLDVLMMAKDYVPAGTLTKTSIMLGC-GETPDQVVSTMEKVRAAGVDVMTFGQYM 313 (375)
Q Consensus 255 ~s~~~~l~vl~~ak~~~p~Gl~tkt~imvGl-GET~ee~~etl~~Lrelgvd~v~i~qYl 313 (375)
+++++.++.++.+++ .|+.+++++|+|+ |||.+++.++++.+.+++++.+.+.++.
T Consensus 160 ~t~~~~~~ai~~l~~---~gi~v~~~lI~GlPget~e~~~~t~~~l~~l~~d~i~i~~l~ 216 (302)
T TIGR01212 160 HDFACYVDAVKRARK---RGIKVCSHVILGLPGEDREEMMETAKIVSLLDVDGIKIHPLH 216 (302)
T ss_pred ChHHHHHHHHHHHHH---cCCEEEEeEEECCCCCCHHHHHHHHHHHHhcCCCEEEEEEEE
Confidence 999999999999999 5899999999999 9999999999999999999999986553
No 68
>PRK13361 molybdenum cofactor biosynthesis protein A; Provisional
Probab=99.62 E-value=4.7e-14 Score=139.56 Aligned_cols=186 Identities=20% Similarity=0.280 Sum_probs=138.1
Q ss_pred eeeCCccCCCCcCCCCCCCC---CCCCCCcchHHHHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCCCc
Q 017200 133 MILGDTCTRGCRFCNVKTSR---APPPPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNM 209 (375)
Q Consensus 133 m~i~d~C~~~C~FC~v~~~r---~~~~ld~eEi~~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p~i 209 (375)
+.+++.|+.+|.||...... ....++.+|+.+.++++.+.|++.|.||||+.--.+ .+.++++.+++. +.+
T Consensus 18 i~iT~~CNl~C~yC~~~~~~~~~~~~~ls~eei~~li~~~~~~Gv~~I~~tGGEPllr~-----dl~~li~~i~~~-~~l 91 (329)
T PRK13361 18 LSVTDRCDFRCVYCMSEDPCFLPRDQVLSLEELAWLAQAFTELGVRKIRLTGGEPLVRR-----GCDQLVARLGKL-PGL 91 (329)
T ss_pred EEecCCccccCCCCCCCCCCcCCccCCCCHHHHHHHHHHHHHCCCCEEEEECcCCCccc-----cHHHHHHHHHhC-CCC
Confidence 34699999999999855321 122489999999999999999999999999742222 267888888764 333
Q ss_pred -EEEeecCCCCCChHHHHHHHHcCcccccccccchH-HHHHHhcCCCCCHHHHHHHHHHHHHhCCCCc-eEEEeEEEecC
Q 017200 210 -LIEALVPDFRGNNGCVREVAKSGLNVFAHNIETVE-ELQSAVRDHRANFKQSLDVLMMAKDYVPAGT-LTKTSIMLGCG 286 (375)
Q Consensus 210 -~Ie~l~pd~~g~~e~l~~L~~aGldv~~hnlEtv~-rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl-~tkt~imvGlG 286 (375)
.+.+.+-... ..+.++.|+++|++.++..+++.+ +.|.+++ ++.++++.++.++.+++ .|+ .++.++++--|
T Consensus 92 ~~i~itTNG~l-l~~~~~~L~~aGl~~v~ISlDs~~~e~~~~i~-~~g~~~~vl~~i~~~~~---~Gi~~v~in~v~~~g 166 (329)
T PRK13361 92 EELSLTTNGSR-LARFAAELADAGLKRLNISLDTLRPELFAALT-RNGRLERVIAGIDAAKA---AGFERIKLNAVILRG 166 (329)
T ss_pred ceEEEEeChhH-HHHHHHHHHHcCCCeEEEEeccCCHHHhhhhc-CCCCHHHHHHHHHHHHH---cCCCceEEEEEEECC
Confidence 3444332211 246789999999999999999874 9999999 68899999999999998 467 67777665449
Q ss_pred CCHHHHHHHHHHHHHcCCcEEeeecCCCCCCCCCC--ccccCCHHHH
Q 017200 287 ETPDQVVSTMEKVRAAGVDVMTFGQYMRPSKRHMP--VSEYITPEAF 331 (375)
Q Consensus 287 ET~ee~~etl~~Lrelgvd~v~i~qYl~P~~~~~~--v~~~v~pe~~ 331 (375)
++++|+.+.+++++++++++. |..|| |...... -..+++++++
T Consensus 167 ~N~~ei~~~~~~~~~~gi~~~-~ie~m-P~g~~~~~~~~~~~~~~e~ 211 (329)
T PRK13361 167 QNDDEVLDLVEFCRERGLDIA-FIEEM-PLGEIDERRRARHCSSDEV 211 (329)
T ss_pred CCHHHHHHHHHHHHhcCCeEE-EEecc-cCCCccchhhccCcCHHHH
Confidence 999999999999999999876 43565 6332211 2245566554
No 69
>PRK05660 HemN family oxidoreductase; Provisional
Probab=99.61 E-value=4.4e-14 Score=142.45 Aligned_cols=209 Identities=11% Similarity=0.197 Sum_probs=146.3
Q ss_pred CccCCCCcCCCCCCCCCCCCCCcch-HHHHHHHHH-------hcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCC-
Q 017200 137 DTCTRGCRFCNVKTSRAPPPPDPDE-PTNVAEAIA-------SWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKP- 207 (375)
Q Consensus 137 d~C~~~C~FC~v~~~r~~~~ld~eE-i~~~a~al~-------~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p- 207 (375)
--|+..|.||.+.+.......+.++ +....+++. ..+++.|.|.||+-.-++ .+.+.++++.|++.+|
T Consensus 14 PFC~~~C~yC~f~~~~~~~~~~~~~Y~~~l~~Ei~~~~~~~~~~~v~ti~~GGGtPs~l~---~~~l~~ll~~l~~~~~~ 90 (378)
T PRK05660 14 PWCVQKCPYCDFNSHALKGEVPEDEYVDHLLADLDADLPLVQGREVHSIFIGGGTPSLFS---AEAIQRLLDGVRARLPF 90 (378)
T ss_pred CCccCcCCCCCCeecCCCCcCCHHHHHHHHHHHHHHHhHhccCCceeEEEeCCCccccCC---HHHHHHHHHHHHHhCCC
Confidence 3699999999997643111222233 222222222 257899999999866555 4678888888887653
Q ss_pred ----CcEEEeecCCCCCChHHHHHHHHcCcccccccccchH-HHHHHhcCCCCCHHHHHHHHHHHHHhCCCCce-EEEeE
Q 017200 208 ----NMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETVE-ELQSAVRDHRANFKQSLDVLMMAKDYVPAGTL-TKTSI 281 (375)
Q Consensus 208 ----~i~Ie~l~pd~~g~~e~l~~L~~aGldv~~hnlEtv~-rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~-tkt~i 281 (375)
.+.+++ .|+.. +.+.++.|+++|++.+..++|+.+ ++++.|+ |.++.++.++.++.+++ .|+. ++.++
T Consensus 91 ~~~~eit~e~-np~~l-~~e~l~~Lk~~Gv~risiGvqS~~~~~L~~l~-r~~~~~~~~~ai~~~~~---~G~~~v~~dl 164 (378)
T PRK05660 91 APDAEITMEA-NPGTV-EADRFVGYQRAGVNRISIGVQSFSEEKLKRLG-RIHGPDEAKRAAKLAQG---LGLRSFNLDL 164 (378)
T ss_pred CCCcEEEEEe-CcCcC-CHHHHHHHHHcCCCEEEeccCcCCHHHHHHhC-CCCCHHHHHHHHHHHHH---cCCCeEEEEe
Confidence 234444 34433 789999999999999999999765 9999999 89999999999999999 5774 69999
Q ss_pred EEec-CCCHHHHHHHHHHHHHcCCcEEeeecCC-CCCCCCCC-ccccCCHH----HHHHHHHHHHHhhhhhhccchhhhh
Q 017200 282 MLGC-GETPDQVVSTMEKVRAAGVDVMTFGQYM-RPSKRHMP-VSEYITPE----AFERYRALGMEMGFRYVASGPMVRS 354 (375)
Q Consensus 282 mvGl-GET~ee~~etl~~Lrelgvd~v~i~qYl-~P~~~~~~-v~~~v~pe----~~~~l~~~a~~~gf~~~~sgp~vrs 354 (375)
|+|+ |||.+++.++++.+.+++++.|.+.++. .|.+.-.. .......+ .++...++-.+.||......-+.|-
T Consensus 165 i~Glpgqt~~~~~~~l~~~~~l~p~~is~y~l~~~~gT~l~~~~~~~~~~~~~~~~~~~~~~~L~~~Gy~~yei~~fa~~ 244 (378)
T PRK05660 165 MHGLPDQSLEEALDDLRQAIALNPPHLSWYQLTIEPNTLFGSRPPVLPDDDALWDIFEQGHQLLTAAGYQQYETSAYAKP 244 (378)
T ss_pred ecCCCCCCHHHHHHHHHHHHhcCCCeEEeeccEeccCCcccccCCCCcCHHHHHHHHHHHHHHHHHcCCcEeecccccCC
Confidence 9999 9999999999999999999999987664 34321111 11112222 2333444555668765543334443
No 70
>PRK05799 coproporphyrinogen III oxidase; Provisional
Probab=99.61 E-value=2.8e-14 Score=143.24 Aligned_cols=207 Identities=13% Similarity=0.183 Sum_probs=143.4
Q ss_pred CccCCCCcCCCCCCCCCCCCC---CcchHHHHHHHHH-hcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHh--CCCcE
Q 017200 137 DTCTRGCRFCNVKTSRAPPPP---DPDEPTNVAEAIA-SWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKEL--KPNML 210 (375)
Q Consensus 137 d~C~~~C~FC~v~~~r~~~~l---d~eEi~~~a~al~-~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~--~p~i~ 210 (375)
--|+..|.||.++...+.... .++.++++++.+. ..+++.|.|.||+...++ .+.+..+++.|++. .+.+.
T Consensus 11 PfC~~~C~yC~~~~~~~~~~~~~~y~~~l~~Ei~~~~~~~~~~~i~~gGGtps~l~---~~~l~~L~~~i~~~~~~~~~e 87 (374)
T PRK05799 11 PFCKQKCLYCDFPSYSGKEDLMMEYIKALSKEIRNSTKNKKIKSIFIGGGTPTYLS---LEALEILKETIKKLNKKEDLE 87 (374)
T ss_pred CCccCCCCCCCCCcccCCcchHHHHHHHHHHHHHhhcCCCceeEEEECCCcccCCC---HHHHHHHHHHHHhCCCCCCCE
Confidence 359999999999865322222 2444555544332 235778888887654444 34555666666542 13344
Q ss_pred EEe-ecCCCCCChHHHHHHHHcCcccccccccch-HHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCce-EEEeEEEec-C
Q 017200 211 IEA-LVPDFRGNNGCVREVAKSGLNVFAHNIETV-EELQSAVRDHRANFKQSLDVLMMAKDYVPAGTL-TKTSIMLGC-G 286 (375)
Q Consensus 211 Ie~-l~pd~~g~~e~l~~L~~aGldv~~hnlEtv-~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~-tkt~imvGl-G 286 (375)
+.+ ..|+.. +++.++.|+++|++.+..++|+. +++++.++ |.+++++.++.++.+++ .|+. +..++|+|+ |
T Consensus 88 itie~~p~~~-t~e~l~~l~~~G~~rvsiGvqS~~d~~L~~l~-R~~~~~~~~~ai~~l~~---~g~~~v~~dli~GlPg 162 (374)
T PRK05799 88 FTVEGNPGTF-TEEKLKILKSMGVNRLSIGLQAWQNSLLKYLG-RIHTFEEFLENYKLARK---LGFNNINVDLMFGLPN 162 (374)
T ss_pred EEEEeCCCcC-CHHHHHHHHHcCCCEEEEECccCCHHHHHHcC-CCCCHHHHHHHHHHHHH---cCCCcEEEEeecCCCC
Confidence 443 345543 78999999999999999999976 49999998 89999999999999999 4674 899999999 9
Q ss_pred CCHHHHHHHHHHHHHcCCcEEeeecCC-CCCCCCCCccc------c--CCHHH----HHHHHHHHHHhhhhhhccchhhh
Q 017200 287 ETPDQVVSTMEKVRAAGVDVMTFGQYM-RPSKRHMPVSE------Y--ITPEA----FERYRALGMEMGFRYVASGPMVR 353 (375)
Q Consensus 287 ET~ee~~etl~~Lrelgvd~v~i~qYl-~P~~~~~~v~~------~--v~pe~----~~~l~~~a~~~gf~~~~sgp~vr 353 (375)
||.+++.++++.+.+++++.+++..+. .|. +++.+ . ...+. ++...+.-.+.||......-++|
T Consensus 163 qt~e~~~~~l~~~~~l~~~~is~y~l~~~pg---T~l~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~Gy~~ye~~~fa~ 239 (374)
T PRK05799 163 QTLEDWKETLEKVVELNPEHISCYSLIIEEG---TPFYNLYENGKLKLPDEEEEREMYHYTIEFLKEKGYHQYEISNFAK 239 (374)
T ss_pred CCHHHHHHHHHHHHhcCCCEEEEeccEecCC---CHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHcCCcEEeeeeeEC
Confidence 999999999999999999999887653 343 33221 1 11222 33344555566887665444555
Q ss_pred h
Q 017200 354 S 354 (375)
Q Consensus 354 s 354 (375)
.
T Consensus 240 ~ 240 (374)
T PRK05799 240 P 240 (374)
T ss_pred C
Confidence 3
No 71
>PRK05904 coproporphyrinogen III oxidase; Provisional
Probab=99.61 E-value=4.8e-14 Score=141.08 Aligned_cols=208 Identities=9% Similarity=0.118 Sum_probs=150.3
Q ss_pred CccCCCCcCCCCCCCCCC--C-C---CCcchHHHHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCC---
Q 017200 137 DTCTRGCRFCNVKTSRAP--P-P---PDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKP--- 207 (375)
Q Consensus 137 d~C~~~C~FC~v~~~r~~--~-~---ld~eEi~~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p--- 207 (375)
--|...|.||.+.+.-.. . . .-.+|+.+.++.+....++.|-+-||+..-++ .+.+.++++.|++..+
T Consensus 14 PFC~~kC~yC~f~~~~~~~~~~~~~~~~~~~l~~ei~~~~~~~~~tiy~GGGTPs~L~---~~~l~~ll~~i~~~~~~~~ 90 (353)
T PRK05904 14 PFCQYICTFCDFKRILKTPQTKKIFKDFLKNIKMHIKNFKIKQFKTIYLGGGTPNCLN---DQLLDILLSTIKPYVDNNC 90 (353)
T ss_pred CCccCcCCCCCCeeccCCcccHHHHHHHHHHHHHHHHHhcCCCeEEEEECCCccccCC---HHHHHHHHHHHHHhcCCCC
Confidence 469999999999863111 1 1 12344444444333345677777777755555 4678888888887653
Q ss_pred CcEEEeecCCCCCChHHHHHHHHcCcccccccccch-HHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCce-EEEeEEEec
Q 017200 208 NMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETV-EELQSAVRDHRANFKQSLDVLMMAKDYVPAGTL-TKTSIMLGC 285 (375)
Q Consensus 208 ~i~Ie~l~pd~~g~~e~l~~L~~aGldv~~hnlEtv-~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~-tkt~imvGl 285 (375)
.+.++ ..|+.. +.+.++.|+++|+..+..++|+. +++++.|+ |+++.++.++.++.+++ .|+. +..++|+|+
T Consensus 91 eitiE-~nP~~l-t~e~l~~lk~~G~nrisiGvQS~~d~vL~~l~-R~~~~~~~~~ai~~lr~---~G~~~v~~dlI~Gl 164 (353)
T PRK05904 91 EFTIE-CNPELI-TQSQINLLKKNKVNRISLGVQSMNNNILKQLN-RTHTIQDSKEAINLLHK---NGIYNISCDFLYCL 164 (353)
T ss_pred eEEEE-eccCcC-CHHHHHHHHHcCCCEEEEecccCCHHHHHHcC-CCCCHHHHHHHHHHHHH---cCCCcEEEEEeecC
Confidence 24455 345543 78999999999999999999975 69999999 89999999999999999 4665 899999999
Q ss_pred -CCCHHHHHHHHHHHHHcCCcEEeeecCC-CCCCCCCC----ccccCCHHHHHHHHHHHHHhhhhhhccchhhh
Q 017200 286 -GETPDQVVSTMEKVRAAGVDVMTFGQYM-RPSKRHMP----VSEYITPEAFERYRALGMEMGFRYVASGPMVR 353 (375)
Q Consensus 286 -GET~ee~~etl~~Lrelgvd~v~i~qYl-~P~~~~~~----v~~~v~pe~~~~l~~~a~~~gf~~~~sgp~vr 353 (375)
|||.+++.++++.+.+++++.+.+..+. .|.+.-.+ +.+....+.++.+.++..+.||....-.-+.|
T Consensus 165 Pgqt~e~~~~tl~~~~~l~p~~is~y~L~~~~gT~l~~~~~~~~~~~~~~~~~~~~~~L~~~Gy~~yeisnfa~ 238 (353)
T PRK05904 165 PILKLKDLDEVFNFILKHKINHISFYSLEIKEGSILKKYHYTIDEDKEAEQLNYIKAKFNKLNYKRYEVSNWTN 238 (353)
T ss_pred CCCCHHHHHHHHHHHHhcCCCEEEEEeeEecCCChHhhcCCCCChHHHHHHHHHHHHHHHHcCCcEEechhhcC
Confidence 9999999999999999999999887774 45332111 11112234566777788888987654334555
No 72
>TIGR02666 moaA molybdenum cofactor biosynthesis protein A, bacterial. The model for this family describes molybdenum cofactor biosynthesis protein A, or MoaA, as found in bacteria. It does not include the family of probable functional equivalent proteins from the archaea. MoaA works together with MoaC to synthesize precursor Z from guanine.
Probab=99.60 E-value=7.8e-14 Score=137.87 Aligned_cols=169 Identities=19% Similarity=0.266 Sum_probs=132.4
Q ss_pred eeCCccCCCCcCCCCCC-CC----CCCCCCcchHHHHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCCC
Q 017200 134 ILGDTCTRGCRFCNVKT-SR----APPPPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPN 208 (375)
Q Consensus 134 ~i~d~C~~~C~FC~v~~-~r----~~~~ld~eEi~~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p~ 208 (375)
.+++.|+.+|.||.... .. ....++.+|+.+.++.+.+.|++.|.||||+---.++ +.++++.+++. ++
T Consensus 15 ~vT~~CNl~C~yC~~~~~~~~~~~~~~~ls~eei~~~i~~~~~~gv~~V~ltGGEPll~~~-----l~~li~~i~~~-~g 88 (334)
T TIGR02666 15 SVTDRCNLRCVYCMPEGGGLDFLPKEELLTFEEIERLVRAFVGLGVRKVRLTGGEPLLRKD-----LVELVARLAAL-PG 88 (334)
T ss_pred EecCccCcCCCCCCCCcCCCCcCCccCCCCHHHHHHHHHHHHHCCCCEEEEECccccccCC-----HHHHHHHHHhc-CC
Confidence 46999999999999865 21 1234899999999999999999999999997432232 67788887653 44
Q ss_pred c-EEEeecCCCCCChHHHHHHHHcCcccccccccchH-HHHHHhcCCCCCHHHHHHHHHHHHHhCCCCce-EEEeEEEec
Q 017200 209 M-LIEALVPDFRGNNGCVREVAKSGLNVFAHNIETVE-ELQSAVRDHRANFKQSLDVLMMAKDYVPAGTL-TKTSIMLGC 285 (375)
Q Consensus 209 i-~Ie~l~pd~~g~~e~l~~L~~aGldv~~hnlEtv~-rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~-tkt~imvGl 285 (375)
+ .+.+.+-... ..+.++.|+++|++.+++.+++.+ +.|+.++.++.++++.++.++.+++ .|+. ++.++++.-
T Consensus 89 i~~v~itTNG~l-l~~~~~~L~~~gl~~v~ISld~~~~~~~~~i~~~~~~~~~vl~~i~~l~~---~G~~~v~in~vv~~ 164 (334)
T TIGR02666 89 IEDIALTTNGLL-LARHAKDLKEAGLKRVNVSLDSLDPERFAKITRRGGRLEQVLAGIDAALA---AGLEPVKLNTVVMR 164 (334)
T ss_pred CCeEEEEeCchh-HHHHHHHHHHcCCCeEEEecccCCHHHhheeCCCCCCHHHHHHHHHHHHH---cCCCcEEEEEEEeC
Confidence 5 5555442221 356889999999999999999865 8899998446799999999999999 4775 888887767
Q ss_pred CCCHHHHHHHHHHHHHcCCcEEeeecCC
Q 017200 286 GETPDQVVSTMEKVRAAGVDVMTFGQYM 313 (375)
Q Consensus 286 GET~ee~~etl~~Lrelgvd~v~i~qYl 313 (375)
|++++|+.+.+++++++++++ .+..|+
T Consensus 165 g~n~~ei~~l~~~~~~~gv~~-~~ie~m 191 (334)
T TIGR02666 165 GVNDDEIVDLAEFAKERGVTL-RFIELM 191 (334)
T ss_pred CCCHHHHHHHHHHHHhcCCeE-EEEecc
Confidence 999999999999999999974 343555
No 73
>PRK05628 coproporphyrinogen III oxidase; Validated
Probab=99.60 E-value=5.7e-14 Score=141.17 Aligned_cols=205 Identities=15% Similarity=0.227 Sum_probs=146.1
Q ss_pred ccCCCCcCCCCCCCC-CCC--CCC----cchHHHHHHHHHhc------CCcEEEEEeeeCCCCCcccHHHHHHHHHHHHH
Q 017200 138 TCTRGCRFCNVKTSR-APP--PPD----PDEPTNVAEAIASW------GLDYVVITSVDRDDLADQGSGHFAQTVRKLKE 204 (375)
Q Consensus 138 ~C~~~C~FC~v~~~r-~~~--~ld----~eEi~~~a~al~~~------G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~ 204 (375)
-|+..|.||.+.+.. ... ..+ .+.+.++++...+. .++.|.+.||+-.-++ ...+.++++.|++
T Consensus 11 FC~~~C~yC~f~~~~~~~~~~~~~~~~Y~~~l~~Ei~~~~~~~~~~~~~i~~i~~GGGTPs~l~---~~~l~~ll~~i~~ 87 (375)
T PRK05628 11 FCATRCGYCDFNTYTAAELGGGASPDGYLDALRAELELAAAVLGDPAPPVSTVFVGGGTPSLLG---AEGLARVLDAVRD 87 (375)
T ss_pred CcCCcCCCCCCCcccccccccccCHHHHHHHHHHHHHHHHHhhccCCCceeEEEeCCCccccCC---HHHHHHHHHHHHH
Confidence 699999999997532 111 111 34555555544332 3577777777654444 4667888888877
Q ss_pred hC---CCcEEEe-ecCCCCCChHHHHHHHHcCcccccccccch-HHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCce-EE
Q 017200 205 LK---PNMLIEA-LVPDFRGNNGCVREVAKSGLNVFAHNIETV-EELQSAVRDHRANFKQSLDVLMMAKDYVPAGTL-TK 278 (375)
Q Consensus 205 ~~---p~i~Ie~-l~pd~~g~~e~l~~L~~aGldv~~hnlEtv-~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~-tk 278 (375)
.+ +++.+.+ ..|+.. +.+.++.|+++|++.+..++|+. +++++.|+ |.++.++.++.++.+++ .|+. ++
T Consensus 88 ~~~~~~~~e~t~e~~p~~i-~~e~l~~l~~~G~~rvslGvQS~~~~~L~~l~-R~~s~~~~~~a~~~l~~---~g~~~v~ 162 (375)
T PRK05628 88 TFGLAPGAEVTTEANPEST-SPEFFAALRAAGFTRVSLGMQSAAPHVLAVLD-RTHTPGRAVAAAREARA---AGFEHVN 162 (375)
T ss_pred hCCCCCCCEEEEEeCCCCC-CHHHHHHHHHcCCCEEEEecccCCHHHHHHcC-CCCCHHHHHHHHHHHHH---cCCCcEE
Confidence 54 3333332 346543 78999999999999999999976 59999999 89999999999999999 5787 99
Q ss_pred EeEEEec-CCCHHHHHHHHHHHHHcCCcEEeeecCC-CCCCCCCCcccc--------CC----HHHHHHHHHHHHHhhhh
Q 017200 279 TSIMLGC-GETPDQVVSTMEKVRAAGVDVMTFGQYM-RPSKRHMPVSEY--------IT----PEAFERYRALGMEMGFR 344 (375)
Q Consensus 279 t~imvGl-GET~ee~~etl~~Lrelgvd~v~i~qYl-~P~~~~~~v~~~--------v~----pe~~~~l~~~a~~~gf~ 344 (375)
.++|+|+ |||.+++.++++.+.+++++.+.+.++. .|. +++.+. +. .+.++...+.-.+.||.
T Consensus 163 ~dli~GlPgqt~~~~~~tl~~~~~l~~~~i~~y~l~~~~g---T~l~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~G~~ 239 (375)
T PRK05628 163 LDLIYGTPGESDDDWRASLDAALEAGVDHVSAYALIVEDG---TALARRVRRGELPAPDDDVLADRYELADARLSAAGFD 239 (375)
T ss_pred EEEeccCCCCCHHHHHHHHHHHHhcCCCEEEeeeeecCCC---ChHHHHhhcCCCCCCChHHHHHHHHHHHHHHHHcCCC
Confidence 9999999 9999999999999999999999887764 332 222111 11 22344555566677887
Q ss_pred hhccchhhh
Q 017200 345 YVASGPMVR 353 (375)
Q Consensus 345 ~~~sgp~vr 353 (375)
.....-++|
T Consensus 240 ~ye~s~fa~ 248 (375)
T PRK05628 240 WYEVSNWAR 248 (375)
T ss_pred eeeeccccC
Confidence 665544555
No 74
>PRK00164 moaA molybdenum cofactor biosynthesis protein A; Reviewed
Probab=99.58 E-value=1.3e-13 Score=136.00 Aligned_cols=170 Identities=17% Similarity=0.225 Sum_probs=130.9
Q ss_pred eeeCCccCCCCcCCCCCCC----CCCCCCCcchHHHHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCCC
Q 017200 133 MILGDTCTRGCRFCNVKTS----RAPPPPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPN 208 (375)
Q Consensus 133 m~i~d~C~~~C~FC~v~~~----r~~~~ld~eEi~~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p~ 208 (375)
+.++++|+.+|.||..... .....++++|+.+.++.+.+.|++.|.||||+.--.++ +.++++.+++..+.
T Consensus 21 i~vT~~Cnl~C~yC~~~~~~~~~~~~~~ls~eei~~~i~~~~~~gi~~I~~tGGEPll~~~-----l~~li~~i~~~~~~ 95 (331)
T PRK00164 21 ISVTDRCNFRCTYCMPEGYLPFLPKEELLSLEEIERLVRAFVALGVRKVRLTGGEPLLRKD-----LEDIIAALAALPGI 95 (331)
T ss_pred EEEcCCcCcCCCCCCCccCCCCCCccccCCHHHHHHHHHHHHHCCCCEEEEECCCCcCccC-----HHHHHHHHHhcCCC
Confidence 4579999999999987652 11224899999999999999999999999987322232 67788888765333
Q ss_pred cEEEeecCCCCCChHHHHHHHHcCcccccccccchH-HHHHHhcCCCCCHHHHHHHHHHHHHhCCCCc-eEEEeEEEecC
Q 017200 209 MLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETVE-ELQSAVRDHRANFKQSLDVLMMAKDYVPAGT-LTKTSIMLGCG 286 (375)
Q Consensus 209 i~Ie~l~pd~~g~~e~l~~L~~aGldv~~hnlEtv~-rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl-~tkt~imvGlG 286 (375)
..|.+.+-... ..+.++.|+++|++.++..+++.+ +.|..++ ++.++++.++.++.+++. |+ .++..+++--|
T Consensus 96 ~~i~itTNG~l-l~~~~~~L~~agl~~i~ISlds~~~e~~~~i~-~~~~~~~vl~~i~~~~~~---g~~~v~i~~vv~~g 170 (331)
T PRK00164 96 RDLALTTNGYL-LARRAAALKDAGLDRVNVSLDSLDPERFKAIT-GRDRLDQVLAGIDAALAA---GLTPVKVNAVLMKG 170 (331)
T ss_pred ceEEEEcCchh-HHHHHHHHHHcCCCEEEEEeccCCHHHhccCC-CCCCHHHHHHHHHHHHHC---CCCcEEEEEEEECC
Confidence 45554443221 246788999999999999999865 8899998 678999999999999994 66 67777665449
Q ss_pred CCHHHHHHHHHHHHHcCCcEEeeecCC
Q 017200 287 ETPDQVVSTMEKVRAAGVDVMTFGQYM 313 (375)
Q Consensus 287 ET~ee~~etl~~Lrelgvd~v~i~qYl 313 (375)
++++|+.+.+++++++++++- +..|+
T Consensus 171 ~n~~ei~~l~~~~~~~gv~v~-~ie~~ 196 (331)
T PRK00164 171 VNDDEIPDLLEWAKDRGIQLR-FIELM 196 (331)
T ss_pred CCHHHHHHHHHHHHhCCCeEE-EEEee
Confidence 999999999999999998643 43565
No 75
>TIGR00538 hemN oxygen-independent coproporphyrinogen III oxidase. This model represents HemN, the oxygen-independent coproporphyrinogen III oxidase that replaces HemF function under anaerobic conditions. Several species, including E. coli, Helicobacter pylori, and Aquifex aeolicus, have both a member of this family and a member of another, closely related family for which there is no evidence of coproporphyrinogen III oxidase activity. Members of this family have a perfectly conserved motif PYRT[SC]YP in a region N-terminal to the region of homology with the related uncharacterized protein.
Probab=99.58 E-value=1.1e-13 Score=142.71 Aligned_cols=208 Identities=17% Similarity=0.297 Sum_probs=148.2
Q ss_pred CccCCCCcCCCCCCCCCC-CCC---CcchHHHHHHHHHh-----cCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCC
Q 017200 137 DTCTRGCRFCNVKTSRAP-PPP---DPDEPTNVAEAIAS-----WGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKP 207 (375)
Q Consensus 137 d~C~~~C~FC~v~~~r~~-~~l---d~eEi~~~a~al~~-----~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p 207 (375)
.-|+..|.||.+....+. ... ..+.++++++.+.. .+++.|.+.||+-..++ .+++.++++.|++.++
T Consensus 57 PFC~~~C~yC~~~~~~~~~~~~~~~y~~~L~~Ei~~~~~~~~~~~~v~~I~fgGGtP~~l~---~~~l~~ll~~i~~~~~ 133 (455)
T TIGR00538 57 PFCHKACYFCGCNVIITRQKHKADPYLDALEKEIALVAPLFDGNRHVSQLHWGGGTPTYLS---PEQISRLMKLIRENFP 133 (455)
T ss_pred CCccCcCCCCCCCccCCCCcchHHHHHHHHHHHHHHHHHhcCCCCceEEEEECCCCcCCCC---HHHHHHHHHHHHHhCC
Confidence 579999999999864311 121 24555555554432 37889999999765444 5678889999887643
Q ss_pred ---C--cEEEeecCCCCCChHHHHHHHHcCcccccccccchH-HHHHHhcCCCCCHHHHHHHHHHHHHhCCCCce-EEEe
Q 017200 208 ---N--MLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETVE-ELQSAVRDHRANFKQSLDVLMMAKDYVPAGTL-TKTS 280 (375)
Q Consensus 208 ---~--i~Ie~l~pd~~g~~e~l~~L~~aGldv~~hnlEtv~-rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~-tkt~ 280 (375)
+ +.++ ..|+.. +.+.++.|+++|++.+..++|+.+ ++++.|+ |.++.++.++.++.+++ .|+. +..+
T Consensus 134 ~~~~~eitie-~np~~l-~~e~l~~lk~~G~~risiGvqS~~~~~l~~l~-r~~~~~~~~~ai~~l~~---~G~~~v~~d 207 (455)
T TIGR00538 134 FNADAEISIE-IDPRYI-TKDVIDALRDEGFNRLSFGVQDFNKEVQQAVN-RIQPEEMIFELMNHARE---AGFTSINID 207 (455)
T ss_pred CCCCCeEEEE-eccCcC-CHHHHHHHHHcCCCEEEEcCCCCCHHHHHHhC-CCCCHHHHHHHHHHHHh---cCCCcEEEe
Confidence 2 3344 345433 789999999999999999999865 9999999 78999999999999999 5774 7899
Q ss_pred EEEec-CCCHHHHHHHHHHHHHcCCcEEeeecCC-CCCCCC--CCcccc--CCHHH----HHHHHHHHHHhhhhhhccch
Q 017200 281 IMLGC-GETPDQVVSTMEKVRAAGVDVMTFGQYM-RPSKRH--MPVSEY--ITPEA----FERYRALGMEMGFRYVASGP 350 (375)
Q Consensus 281 imvGl-GET~ee~~etl~~Lrelgvd~v~i~qYl-~P~~~~--~~v~~~--v~pe~----~~~l~~~a~~~gf~~~~sgp 350 (375)
+|+|+ |||.+++.++++.+.+++++.+.+..+. .|.... ..+.+. ..+++ ++...+...+.||.....+-
T Consensus 208 li~GlPgqt~e~~~~tl~~~~~l~~~~is~y~L~~~p~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~L~~~Gy~~~~~~~ 287 (455)
T TIGR00538 208 LIYGLPKQTKESFAKTLEKVAELNPDRLAVFNYAHVPWVKPAQRKIPEAALPSAEEKLDILQETIAFLTEAGYQFIGMDH 287 (455)
T ss_pred EEeeCCCCCHHHHHHHHHHHHhcCCCEEEEecCccccchhHHHhcccccCCCCHHHHHHHHHHHHHHHHHCCCEEEeccc
Confidence 99999 9999999999999999999999997773 342111 111121 22333 23334444556776554444
Q ss_pred hhh
Q 017200 351 MVR 353 (375)
Q Consensus 351 ~vr 353 (375)
++|
T Consensus 288 fa~ 290 (455)
T TIGR00538 288 FAK 290 (455)
T ss_pred eeC
Confidence 444
No 76
>PRK08446 coproporphyrinogen III oxidase; Provisional
Probab=99.58 E-value=8.1e-14 Score=139.10 Aligned_cols=204 Identities=11% Similarity=0.141 Sum_probs=146.7
Q ss_pred ccCCCCcCCCCCCCCCCCCC---CcchHHHHHHHHHh----cCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhC-CC-
Q 017200 138 TCTRGCRFCNVKTSRAPPPP---DPDEPTNVAEAIAS----WGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELK-PN- 208 (375)
Q Consensus 138 ~C~~~C~FC~v~~~r~~~~l---d~eEi~~~a~al~~----~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~-p~- 208 (375)
-|+..|.||.+........+ ..+.++++++...+ .+++.|.+.||+-.-++ .+++.++++.|++.. ++
T Consensus 9 FC~~~C~yC~f~~~~~~~~~~~~y~~~L~~Ei~~~~~~~~~~~v~~iyfGGGTPs~l~---~~~l~~ll~~i~~~~~~~~ 85 (350)
T PRK08446 9 FCESKCGYCAFNSYENKHDLKKEYMQALCLDLKFELEQFTDEKIESVFIGGGTPSTVS---AKFYEPIFEIISPYLSKDC 85 (350)
T ss_pred CccCcCCCCCCcCcCCCcccHHHHHHHHHHHHHHHHhhccCCceeEEEECCCccccCC---HHHHHHHHHHHHHhcCCCc
Confidence 69999999999764211111 33444555443322 36889999998765555 466777777777643 23
Q ss_pred -cEEEeecCCCCCChHHHHHHHHcCcccccccccch-HHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCce-EEEeEEEec
Q 017200 209 -MLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETV-EELQSAVRDHRANFKQSLDVLMMAKDYVPAGTL-TKTSIMLGC 285 (375)
Q Consensus 209 -i~Ie~l~pd~~g~~e~l~~L~~aGldv~~hnlEtv-~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~-tkt~imvGl 285 (375)
+.+++ .|+.. +.+.++.++++|++.+..++|+. +++++.++ |.++.++.++.++.+++ .|+. ++.++|+|+
T Consensus 86 eitiE~-nP~~~-~~e~l~~l~~~GvnRiSiGvQS~~~~~L~~lg-R~~~~~~~~~ai~~lr~---~g~~~v~iDli~Gl 159 (350)
T PRK08446 86 EITTEA-NPNSA-TKAWLKGMKNLGVNRISFGVQSFNEDKLKFLG-RIHSQKQIIKAIENAKK---AGFENISIDLIYDT 159 (350)
T ss_pred eEEEEe-CCCCC-CHHHHHHHHHcCCCEEEEecccCCHHHHHHcC-CCCCHHHHHHHHHHHHH---cCCCEEEEEeecCC
Confidence 34443 45533 78999999999999999999986 59999998 89999999999999999 4774 789999999
Q ss_pred -CCCHHHHHHHHHHHHHcCCcEEeeecCC-CCCCCCCCccc----cCCH-HHHHHHHHHHHHhhhhhhccchhhh
Q 017200 286 -GETPDQVVSTMEKVRAAGVDVMTFGQYM-RPSKRHMPVSE----YITP-EAFERYRALGMEMGFRYVASGPMVR 353 (375)
Q Consensus 286 -GET~ee~~etl~~Lrelgvd~v~i~qYl-~P~~~~~~v~~----~v~p-e~~~~l~~~a~~~gf~~~~sgp~vr 353 (375)
|||.+++.++++.+.+++++.+.+..+. .| ++++.+ -... +.++...+...+.||......-++|
T Consensus 160 Pgqt~~~~~~~l~~~~~l~~~~is~y~L~~~~---gT~l~~~~~~~~~~~~~~~~~~~~l~~~Gy~~yeis~fa~ 231 (350)
T PRK08446 160 PLDNKKLLKEELKLAKELPINHLSAYSLTIEE---NTPFFEKNHKKKDDENLAKFFIEQLEELGFKQYEISNFGK 231 (350)
T ss_pred CCCCHHHHHHHHHHHHhcCCCEEEeccceecC---CChhHHhhhcCCCHHHHHHHHHHHHHHCCCcEEEeehhhC
Confidence 9999999999999999999999987653 23 223221 1122 2345556666777886654444555
No 77
>PRK09249 coproporphyrinogen III oxidase; Provisional
Probab=99.58 E-value=9.1e-14 Score=143.20 Aligned_cols=214 Identities=16% Similarity=0.247 Sum_probs=150.6
Q ss_pred EEEeeeCCccCCCCcCCCCCCCCCC-CCC---CcchHHHHHHHHH-----hcCCcEEEEEeeeCCCCCcccHHHHHHHHH
Q 017200 130 ATIMILGDTCTRGCRFCNVKTSRAP-PPP---DPDEPTNVAEAIA-----SWGLDYVVITSVDRDDLADQGSGHFAQTVR 200 (375)
Q Consensus 130 atfm~i~d~C~~~C~FC~v~~~r~~-~~l---d~eEi~~~a~al~-----~~G~~eIvLTsgdr~dl~d~G~~~~~~lir 200 (375)
.-|+-+ --|+..|.||.+...... ... ..+.++++++.++ ..+++.|.|.||+..-++ ...+.++++
T Consensus 51 ~LYvHI-PFC~~~C~yC~~~~~~~~~~~~~~~y~~~L~~Ei~~~~~~~~~~~~v~~i~~gGGtPs~l~---~~~l~~ll~ 126 (453)
T PRK09249 51 SLYVHI-PFCRSLCYYCGCNKIITRDHEKADPYLDALEKEIALVAALLGPGRPVSQLHWGGGTPTFLS---PEQLRRLMA 126 (453)
T ss_pred EEEEEe-CCccccCCCCCCcccCCCCcchHHHHHHHHHHHHHHHHHHhCCCCceEEEEECCcccccCC---HHHHHHHHH
Confidence 344433 579999999998764211 111 2244444444333 245789999998765454 467888898
Q ss_pred HHHHhCC---C--cEEEeecCCCCCChHHHHHHHHcCcccccccccch-HHHHHHhcCCCCCHHHHHHHHHHHHHhCCCC
Q 017200 201 KLKELKP---N--MLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETV-EELQSAVRDHRANFKQSLDVLMMAKDYVPAG 274 (375)
Q Consensus 201 ~Ik~~~p---~--i~Ie~l~pd~~g~~e~l~~L~~aGldv~~hnlEtv-~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~G 274 (375)
.|++.++ + +.++ ..|+.. +.+.++.|+++|++.+..++|+. +++++.++ |.+++++.++.++.+++ .|
T Consensus 127 ~l~~~~~~~~~~e~tie-~np~~l-t~e~l~~l~~aG~~risiGvqS~~~~~L~~l~-r~~~~~~~~~ai~~l~~---~G 200 (453)
T PRK09249 127 LLREHFNFAPDAEISIE-IDPREL-DLEMLDALRELGFNRLSLGVQDFDPEVQKAVN-RIQPFEFTFALVEAARE---LG 200 (453)
T ss_pred HHHHhCCCCCCCEEEEE-ecCCcC-CHHHHHHHHHcCCCEEEECCCCCCHHHHHHhC-CCCCHHHHHHHHHHHHH---cC
Confidence 8887653 2 3444 345433 78999999999999999999976 49999999 89999999999999999 47
Q ss_pred c-eEEEeEEEec-CCCHHHHHHHHHHHHHcCCcEEeeecCC-CCCC-CC-CCc--cccCCHHH----HHHHHHHHHHhhh
Q 017200 275 T-LTKTSIMLGC-GETPDQVVSTMEKVRAAGVDVMTFGQYM-RPSK-RH-MPV--SEYITPEA----FERYRALGMEMGF 343 (375)
Q Consensus 275 l-~tkt~imvGl-GET~ee~~etl~~Lrelgvd~v~i~qYl-~P~~-~~-~~v--~~~v~pe~----~~~l~~~a~~~gf 343 (375)
+ .+..++|+|+ |||.+++.++++.+.+++++.+.+..+. .|.. +. ..+ ......+. ++...+...+.||
T Consensus 201 ~~~v~~dli~GlPgqt~e~~~~~l~~~~~l~~~~i~~y~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~Gy 280 (453)
T PRK09249 201 FTSINIDLIYGLPKQTPESFARTLEKVLELRPDRLAVFNYAHVPWLFKAQRKIDEADLPSPEEKLAILQQTIETLTEAGY 280 (453)
T ss_pred CCcEEEEEEccCCCCCHHHHHHHHHHHHhcCCCEEEEccCccchhhhhHhcCCCcccCCCHHHHHHHHHHHHHHHHHCCC
Confidence 7 7899999999 9999999999999999999999997764 2321 01 111 11123333 3334555566788
Q ss_pred hhhccchhhh
Q 017200 344 RYVASGPMVR 353 (375)
Q Consensus 344 ~~~~sgp~vr 353 (375)
......-+.|
T Consensus 281 ~~ye~s~far 290 (453)
T PRK09249 281 QYIGMDHFAL 290 (453)
T ss_pred EEEeccceeC
Confidence 6665544444
No 78
>TIGR00539 hemN_rel putative oxygen-independent coproporphyrinogen III oxidase. Experimentally determined examples of oxygen-independent coproporphyrinogen III oxidase, an enzyme that replaces HemF function under anaerobic conditions, belong to a family of proteins described by the model hemN. This model, hemN_rel, models a closely related protein, shorter at the amino end and lacking the region containing the motif PYRT[SC]YP found in members of the hemN family. Several species, including E. coli, Helicobacter pylori, Aquifex aeolicus, and Chlamydia trachomatis, have members of both this family and the E. coli hemN family. The member of this family from Bacillus subtilis was shown to complement an hemF/hemN double mutant of Salmonella typimurium and to prevent accumulation of coproporphyrinogen III under anaerobic conditions, but the exact role of this protein is still uncertain. It is found in a number of species that do not synthesize heme de novo.
Probab=99.57 E-value=9.1e-14 Score=139.08 Aligned_cols=168 Identities=11% Similarity=0.203 Sum_probs=126.4
Q ss_pred ccCCCCcCCCCCCCCCC-CCC--CcchHHHHHHH-HHhcC---CcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhC---C
Q 017200 138 TCTRGCRFCNVKTSRAP-PPP--DPDEPTNVAEA-IASWG---LDYVVITSVDRDDLADQGSGHFAQTVRKLKELK---P 207 (375)
Q Consensus 138 ~C~~~C~FC~v~~~r~~-~~l--d~eEi~~~a~a-l~~~G---~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~---p 207 (375)
-|+..|.||.+...... ... -.+.+.++++. +...| ++.|.+.||+-.-++ ...+.++++.|++.. +
T Consensus 9 FC~~~C~yC~f~~~~~~~~~~~~y~~~l~~Ei~~~~~~~~~~~v~~i~~GGGtPs~l~---~~~l~~ll~~i~~~~~~~~ 85 (360)
T TIGR00539 9 FCENKCGYCDFNSYENKSGPKEEYTQALCQDLKHALSQTDQEPLESIFIGGGTPNTLS---VEAFERLFESIYQHASLSD 85 (360)
T ss_pred CCcCcCCCCCCcccCcCccCHHHHHHHHHHHHHHHHHhcCCCcccEEEeCCCchhcCC---HHHHHHHHHHHHHhCCCCC
Confidence 59999999999864211 111 01222223322 23334 789999999755444 456777777777554 3
Q ss_pred CcEEEe-ecCCCCCChHHHHHHHHcCcccccccccch-HHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCc-eEEEeEEEe
Q 017200 208 NMLIEA-LVPDFRGNNGCVREVAKSGLNVFAHNIETV-EELQSAVRDHRANFKQSLDVLMMAKDYVPAGT-LTKTSIMLG 284 (375)
Q Consensus 208 ~i~Ie~-l~pd~~g~~e~l~~L~~aGldv~~hnlEtv-~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl-~tkt~imvG 284 (375)
++.+.+ ..|+.. +.+.++.|+++|++.+..++|+. +++++.|. |.+++++.++.++.+++ .|+ .+..++|+|
T Consensus 86 ~~eitie~np~~l-t~e~l~~l~~~Gv~risiGvqS~~~~~l~~lg-R~~~~~~~~~ai~~l~~---~G~~~v~~dli~G 160 (360)
T TIGR00539 86 DCEITTEANPELI-TAEWCKGLKGAGINRLSLGVQSFRDDKLLFLG-RQHSAKNIAPAIETALK---SGIENISLDLMYG 160 (360)
T ss_pred CCEEEEEeCCCCC-CHHHHHHHHHcCCCEEEEecccCChHHHHHhC-CCCCHHHHHHHHHHHHH---cCCCeEEEeccCC
Confidence 333332 355544 78999999999999999999976 59999997 89999999999999999 577 489999999
Q ss_pred c-CCCHHHHHHHHHHHHHcCCcEEeeecCC
Q 017200 285 C-GETPDQVVSTMEKVRAAGVDVMTFGQYM 313 (375)
Q Consensus 285 l-GET~ee~~etl~~Lrelgvd~v~i~qYl 313 (375)
+ |||.+++.++++.+.+++++.+.+..+.
T Consensus 161 lPgqt~~~~~~~l~~~~~l~~~~is~y~l~ 190 (360)
T TIGR00539 161 LPLQTLNSLKEELKLAKELPINHLSAYALS 190 (360)
T ss_pred CCCCCHHHHHHHHHHHHccCCCEEEeecce
Confidence 9 9999999999999999999999986653
No 79
>PRK09058 coproporphyrinogen III oxidase; Provisional
Probab=99.57 E-value=8.5e-14 Score=143.35 Aligned_cols=175 Identities=16% Similarity=0.269 Sum_probs=134.3
Q ss_pred EEEEeeeCCccCCCCcCCCCCCCC-CCCC--CCcchHHHHHHHHHh------cCCcEEEEEeeeCCCCCcccHHHHHHHH
Q 017200 129 TATIMILGDTCTRGCRFCNVKTSR-APPP--PDPDEPTNVAEAIAS------WGLDYVVITSVDRDDLADQGSGHFAQTV 199 (375)
Q Consensus 129 tatfm~i~d~C~~~C~FC~v~~~r-~~~~--ld~eEi~~~a~al~~------~G~~eIvLTsgdr~dl~d~G~~~~~~li 199 (375)
..-|+-+ --|...|.||.+.+.. .... .-.+.++++++...+ ..++.|.|-||+-..++ .+.+.+++
T Consensus 62 ~~lYiHI-PFC~~~C~yC~f~~~~~~~~~~~~Y~~~L~~Ei~~~~~~~~~~~~~i~~iy~GGGTPs~L~---~~~l~~ll 137 (449)
T PRK09058 62 RLLYIHI-PFCRTHCTFCGFFQNAWNPEAVARYTDALIRELAMEADSPLTQSAPIHAVYFGGGTPTALS---AEDLARLI 137 (449)
T ss_pred eEEEEEe-CCcCCcCCCCCCcCcCCchhhHHHHHHHHHHHHHHHhhccccCCCeeeEEEECCCccccCC---HHHHHHHH
Confidence 4555544 4699999999987532 1111 234556666665543 23567777777655555 56788888
Q ss_pred HHHHHhCC-----CcEEEeecCCCCCChHHHHHHHHcCcccccccccch-HHHHHHhcCCCCCHHHHHHHHHHHHHhCCC
Q 017200 200 RKLKELKP-----NMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETV-EELQSAVRDHRANFKQSLDVLMMAKDYVPA 273 (375)
Q Consensus 200 r~Ik~~~p-----~i~Ie~l~pd~~g~~e~l~~L~~aGldv~~hnlEtv-~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~ 273 (375)
+.|++.+| .+.+|+-.-.+ +.+.++.++++|++.+..++|+. +++++.|+ |.++.++.++.++.+++ .
T Consensus 138 ~~i~~~~~l~~~~eitiE~~p~~~--t~e~l~~l~~aGvnRiSiGVQSf~d~vLk~lg-R~~~~~~~~~~i~~l~~---~ 211 (449)
T PRK09058 138 TALREYLPLAPDCEITLEGRINGF--DDEKADAALDAGANRFSIGVQSFNTQVRRRAG-RKDDREEVLARLEELVA---R 211 (449)
T ss_pred HHHHHhCCCCCCCEEEEEeCcCcC--CHHHHHHHHHcCCCEEEecCCcCCHHHHHHhC-CCCCHHHHHHHHHHHHh---C
Confidence 88888764 23455332234 78999999999999999999976 59999999 89999999999999999 4
Q ss_pred C-ceEEEeEEEec-CCCHHHHHHHHHHHHHcCCcEEeeecCC
Q 017200 274 G-TLTKTSIMLGC-GETPDQVVSTMEKVRAAGVDVMTFGQYM 313 (375)
Q Consensus 274 G-l~tkt~imvGl-GET~ee~~etl~~Lrelgvd~v~i~qYl 313 (375)
| ..+..++|+|+ |||.+++.++++.+.+++++.|.+.++.
T Consensus 212 g~~~v~~DlI~GlPgqT~e~~~~~l~~~~~l~~~~is~y~L~ 253 (449)
T PRK09058 212 DRAAVVCDLIFGLPGQTPEIWQQDLAIVRDLGLDGVDLYALN 253 (449)
T ss_pred CCCcEEEEEEeeCCCCCHHHHHHHHHHHHhcCCCEEEEeccc
Confidence 5 57999999999 9999999999999999999999987763
No 80
>PLN02951 Molybderin biosynthesis protein CNX2
Probab=99.56 E-value=3.8e-13 Score=135.57 Aligned_cols=171 Identities=17% Similarity=0.282 Sum_probs=130.0
Q ss_pred eeeCCccCCCCcCCCCCCCC--CC--CCCCcchHHHHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCCC
Q 017200 133 MILGDTCTRGCRFCNVKTSR--AP--PPPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPN 208 (375)
Q Consensus 133 m~i~d~C~~~C~FC~v~~~r--~~--~~ld~eEi~~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p~ 208 (375)
+.+++.|+.+|.||...... .+ ..++.+|+.+.++.+++.|++.|.||||+. -+. ..+.++++.+++. ++
T Consensus 62 isvT~~CNlrC~yC~~~~~~~~~~~~~~ls~eei~~~i~~~~~~Gv~~I~~tGGEP-llr----~dl~eli~~l~~~-~g 135 (373)
T PLN02951 62 ISLTERCNLRCQYCMPEEGVELTPKSHLLSQDEIVRLAGLFVAAGVDKIRLTGGEP-TLR----KDIEDICLQLSSL-KG 135 (373)
T ss_pred EEEcCCcCcCCCCCCCCcCCCCCCccccCCHHHHHHHHHHHHHCCCCEEEEECCCC-cch----hhHHHHHHHHHhc-CC
Confidence 45799999999999875321 11 238999999999999999999999999863 221 2377888888764 34
Q ss_pred c-EEEeecCCCCCChHHHHHHHHcCcccccccccch-HHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCc-eEEEeEEEec
Q 017200 209 M-LIEALVPDFRGNNGCVREVAKSGLNVFAHNIETV-EELQSAVRDHRANFKQSLDVLMMAKDYVPAGT-LTKTSIMLGC 285 (375)
Q Consensus 209 i-~Ie~l~pd~~g~~e~l~~L~~aGldv~~hnlEtv-~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl-~tkt~imvGl 285 (375)
+ .+.+.+-.+. ..+.+..|+++|++.+++.+++. ++.|+.++ ++..+++.++.++.+++. |+ .++..+.+--
T Consensus 136 i~~i~itTNG~l-L~~~~~~L~~aGld~VnISLDsl~~e~~~~it-r~~~~~~vl~~I~~a~~~---G~~~vkin~vv~~ 210 (373)
T PLN02951 136 LKTLAMTTNGIT-LSRKLPRLKEAGLTSLNISLDTLVPAKFEFLT-RRKGHDRVLESIDTAIEL---GYNPVKVNCVVMR 210 (373)
T ss_pred CceEEEeeCcch-HHHHHHHHHhCCCCeEEEeeccCCHHHHHHHh-cCCCHHHHHHHHHHHHHc---CCCcEEEEEEecC
Confidence 4 3444432221 34678999999999999999986 48899998 567789999999999984 65 4677766655
Q ss_pred CCCHHHHHHHHHHHHHcCCcEEeeecCCCC
Q 017200 286 GETPDQVVSTMEKVRAAGVDVMTFGQYMRP 315 (375)
Q Consensus 286 GET~ee~~etl~~Lrelgvd~v~i~qYl~P 315 (375)
|++++|+.+.++++++.++++ .+..||..
T Consensus 211 g~N~~Ei~~li~~a~~~gi~v-r~ie~mP~ 239 (373)
T PLN02951 211 GFNDDEICDFVELTRDKPINV-RFIEFMPF 239 (373)
T ss_pred CCCHHHHHHHHHHHHhCCCeE-EEEEcccC
Confidence 999999999999999999754 34466643
No 81
>PRK08208 coproporphyrinogen III oxidase; Validated
Probab=99.56 E-value=2.2e-13 Score=139.48 Aligned_cols=213 Identities=14% Similarity=0.188 Sum_probs=149.9
Q ss_pred EEEEeeeCCccCCCCcCCCCCCCCCCC-C---CCcchHHHHHHHHHhc----CCcEEEEEeeeCCCCCcccHHHHHHHHH
Q 017200 129 TATIMILGDTCTRGCRFCNVKTSRAPP-P---PDPDEPTNVAEAIASW----GLDYVVITSVDRDDLADQGSGHFAQTVR 200 (375)
Q Consensus 129 tatfm~i~d~C~~~C~FC~v~~~r~~~-~---ld~eEi~~~a~al~~~----G~~eIvLTsgdr~dl~d~G~~~~~~lir 200 (375)
..-|+-+ --|+..|.||.+....+.. . ...+.++++++.+.+. .+..|.|.||+..-++ .+++.++++
T Consensus 40 ~~lYvHI-PFC~~~C~yC~~~~~~~~~~~~~~~y~~~L~~Ei~~~~~~~~~~~i~~i~~GGGTPs~l~---~~~l~~Ll~ 115 (430)
T PRK08208 40 LSLYIHI-PFCEMRCGFCNLFTRTGADAEFIDSYLDALIRQAEQVAEALAPARFASFAVGGGTPTLLN---AAELEKLFD 115 (430)
T ss_pred eEEEEEe-CCccCcCCCCCCccccCCccchHHHHHHHHHHHHHHHHHHcCCCceeEEEEcCCccccCC---HHHHHHHHH
Confidence 5566655 5699999999987642111 1 1235555555554432 2567777666533333 567888888
Q ss_pred HHHHhCC----C--cEEEeecCCCCCChHHHHHHHHcCcccccccccch-HHHHHHhcCCCCCHHHHHHHHHHHHHhCCC
Q 017200 201 KLKELKP----N--MLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETV-EELQSAVRDHRANFKQSLDVLMMAKDYVPA 273 (375)
Q Consensus 201 ~Ik~~~p----~--i~Ie~l~pd~~g~~e~l~~L~~aGldv~~hnlEtv-~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~ 273 (375)
.|++.++ . +.+++ .|+.. +.+.++.|+++|++.+..++|+. +++++.+. |+++.++.++.++.+++ .
T Consensus 116 ~i~~~~~~~~~~~eitiE~-~P~~l-t~e~l~~l~~~G~~rvslGvQS~~~~~L~~l~-R~~~~~~~~~ai~~l~~---~ 189 (430)
T PRK08208 116 SVERVLGVDLGNIPKSVET-SPATT-TAEKLALLAARGVNRLSIGVQSFHDSELHALH-RPQKRADVHQALEWIRA---A 189 (430)
T ss_pred HHHHhCCCCCCCceEEEEe-CcCcC-CHHHHHHHHHcCCCEEEEecccCCHHHHHHhC-CCCCHHHHHHHHHHHHH---c
Confidence 8876653 2 23333 35543 78999999999999999999987 59999998 89999999999999999 4
Q ss_pred Cce-EEEeEEEec-CCCHHHHHHHHHHHHHcCCcEEeeecCCCCCCCCCCccccCCH--HH----HHHHHHHHHHhhhhh
Q 017200 274 GTL-TKTSIMLGC-GETPDQVVSTMEKVRAAGVDVMTFGQYMRPSKRHMPVSEYITP--EA----FERYRALGMEMGFRY 345 (375)
Q Consensus 274 Gl~-tkt~imvGl-GET~ee~~etl~~Lrelgvd~v~i~qYl~P~~~~~~v~~~v~p--e~----~~~l~~~a~~~gf~~ 345 (375)
|+. +..++|+|+ |+|.+++.++++.+.+++++.+.+..+. + ..++++.+...+ +. ++...+.-.+.||..
T Consensus 190 g~~~i~~dlI~GlP~qt~e~~~~~l~~~~~l~~~~is~y~L~-~-~~~T~l~~~~~~~~~~~~~m~~~~~~~L~~~Gy~~ 267 (430)
T PRK08208 190 GFPILNIDLIYGIPGQTHASWMESLDQALVYRPEELFLYPLY-V-RPLTGLGRRARAWDDQRLSLYRLARDLLLEAGYTQ 267 (430)
T ss_pred CCCeEEEEeecCCCCCCHHHHHHHHHHHHhCCCCEEEEcccc-c-cCCCccchhcCCCHHHHHHHHHHHHHHHHHcCCeE
Confidence 675 689999999 9999999999999999999999997653 3 123344333222 22 333344555668876
Q ss_pred hccchhhh
Q 017200 346 VASGPMVR 353 (375)
Q Consensus 346 ~~sgp~vr 353 (375)
....-++|
T Consensus 268 yei~~far 275 (430)
T PRK08208 268 TSMRMFRR 275 (430)
T ss_pred Eeecceec
Confidence 65555555
No 82
>PRK13347 coproporphyrinogen III oxidase; Provisional
Probab=99.56 E-value=2.6e-13 Score=139.90 Aligned_cols=175 Identities=15% Similarity=0.212 Sum_probs=134.4
Q ss_pred EEEEeeeCCccCCCCcCCCCCCCCC-CCCCC---cchHHHHHHHHHh-----cCCcEEEEEeeeCCCCCcccHHHHHHHH
Q 017200 129 TATIMILGDTCTRGCRFCNVKTSRA-PPPPD---PDEPTNVAEAIAS-----WGLDYVVITSVDRDDLADQGSGHFAQTV 199 (375)
Q Consensus 129 tatfm~i~d~C~~~C~FC~v~~~r~-~~~ld---~eEi~~~a~al~~-----~G~~eIvLTsgdr~dl~d~G~~~~~~li 199 (375)
..-|+-+ .-|+..|.||.+..... ..... .+.++++++...+ .++..|.|.||+-.-++ ..++.+++
T Consensus 51 ~~LYvHI-PfC~~~C~yC~~~~~~~~~~~~~~~y~~~L~~Ei~~~~~~~~~~~~v~~i~fgGGTPs~l~---~~~l~~ll 126 (453)
T PRK13347 51 VSLYLHV-PFCRSLCWFCGCNTIITQRDAPVEAYVAALIREIRLVAASLPQRRRVSQLHWGGGTPTILN---PDQFERLM 126 (453)
T ss_pred eEEEEEe-CCccccCCCCCCcCcCccccchHHHHHHHHHHHHHHHHHhcCCCCeEEEEEEcCcccccCC---HHHHHHHH
Confidence 3445544 35999999999875421 11111 2344444443322 36789999999865555 46789999
Q ss_pred HHHHHhCC---C--cEEEeecCCCCCChHHHHHHHHcCcccccccccch-HHHHHHhcCCCCCHHHHHHHHHHHHHhCCC
Q 017200 200 RKLKELKP---N--MLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETV-EELQSAVRDHRANFKQSLDVLMMAKDYVPA 273 (375)
Q Consensus 200 r~Ik~~~p---~--i~Ie~l~pd~~g~~e~l~~L~~aGldv~~hnlEtv-~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~ 273 (375)
+.|++.++ + +.++ ..|+.. +.+.++.|+++|++.+..++|+. +++++.++ |.++.++.++.++.+++ .
T Consensus 127 ~~i~~~~~~~~~~e~tie-~~p~~l-t~e~l~~L~~~G~~rvsiGvQS~~~~vl~~l~-R~~~~~~~~~ai~~lr~---~ 200 (453)
T PRK13347 127 AALRDAFDFAPEAEIAVE-IDPRTV-TAEMLQALAALGFNRASFGVQDFDPQVQKAIN-RIQPEEMVARAVELLRA---A 200 (453)
T ss_pred HHHHHhCCCCCCceEEEE-eccccC-CHHHHHHHHHcCCCEEEECCCCCCHHHHHHhC-CCCCHHHHHHHHHHHHh---c
Confidence 99988653 2 3344 345544 78999999999999999999976 59999999 89999999999999999 5
Q ss_pred Cce-EEEeEEEec-CCCHHHHHHHHHHHHHcCCcEEeeecCC
Q 017200 274 GTL-TKTSIMLGC-GETPDQVVSTMEKVRAAGVDVMTFGQYM 313 (375)
Q Consensus 274 Gl~-tkt~imvGl-GET~ee~~etl~~Lrelgvd~v~i~qYl 313 (375)
|+. +..++|+|+ |||.+++.++++.+.+++++.|.+..|.
T Consensus 201 G~~~v~~dli~GlPgqt~e~~~~tl~~~~~l~p~~i~~y~l~ 242 (453)
T PRK13347 201 GFESINFDLIYGLPHQTVESFRETLDKVIALSPDRIAVFGYA 242 (453)
T ss_pred CCCcEEEeEEEeCCCCCHHHHHHHHHHHHhcCCCEEEEeccc
Confidence 775 899999999 9999999999999999999999998774
No 83
>PRK07379 coproporphyrinogen III oxidase; Provisional
Probab=99.55 E-value=2e-13 Score=138.66 Aligned_cols=168 Identities=14% Similarity=0.170 Sum_probs=128.8
Q ss_pred CccCCCCcCCCCCCCC-CC-C-CCC-------cchHHHHHHHHHh--cCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHH
Q 017200 137 DTCTRGCRFCNVKTSR-AP-P-PPD-------PDEPTNVAEAIAS--WGLDYVVITSVDRDDLADQGSGHFAQTVRKLKE 204 (375)
Q Consensus 137 d~C~~~C~FC~v~~~r-~~-~-~ld-------~eEi~~~a~al~~--~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~ 204 (375)
--|...|.||.+++.. +. . ..+ .+.+.++++.... .+++.|.|-||+-.-++ .+++.++++.|++
T Consensus 18 PFC~~~C~YC~f~~~~~~~~~~~~~~~~~~~Y~~~L~~Ei~~~~~~~~~i~~iy~GGGTps~l~---~~~l~~ll~~i~~ 94 (400)
T PRK07379 18 PFCRRRCFYCDFPISVVGDRTRGGTSGLIEEYVEVLCQEIAITPSFGQPLQTVFFGGGTPSLLS---VEQLERILTTLDQ 94 (400)
T ss_pred ccccCcCCCCCCccccccccccccccchHHHHHHHHHHHHHHhhccCCceeEEEECCCccccCC---HHHHHHHHHHHHH
Confidence 4699999999997531 11 0 111 1234444443222 25778888888755454 5778888988887
Q ss_pred hCC-----CcEEEeecCCCCCChHHHHHHHHcCcccccccccch-HHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCce-E
Q 017200 205 LKP-----NMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETV-EELQSAVRDHRANFKQSLDVLMMAKDYVPAGTL-T 277 (375)
Q Consensus 205 ~~p-----~i~Ie~l~pd~~g~~e~l~~L~~aGldv~~hnlEtv-~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~-t 277 (375)
.++ .+.++ ..|+-. +.+.++.|+++|++.+..++|+. +++++.|+ |.++.++.++.++.+++ .|+. +
T Consensus 95 ~~~~~~~~eit~E-~~P~~l-t~e~l~~l~~~GvnrislGvQS~~d~~L~~l~-R~~~~~~~~~ai~~l~~---~G~~~v 168 (400)
T PRK07379 95 RFGIAPDAEISLE-IDPGTF-DLEQLQGYRSLGVNRVSLGVQAFQDELLALCG-RSHRVKDIFAAVDLIHQ---AGIENF 168 (400)
T ss_pred hCCCCCCCEEEEE-eCCCcC-CHHHHHHHHHCCCCEEEEEcccCCHHHHHHhC-CCCCHHHHHHHHHHHHH---cCCCeE
Confidence 653 23444 345433 78999999999999999999976 59999999 89999999999999999 5776 8
Q ss_pred EEeEEEec-CCCHHHHHHHHHHHHHcCCcEEeeecCC
Q 017200 278 KTSIMLGC-GETPDQVVSTMEKVRAAGVDVMTFGQYM 313 (375)
Q Consensus 278 kt~imvGl-GET~ee~~etl~~Lrelgvd~v~i~qYl 313 (375)
+.++|+|+ |||.+++.++++.+.+++++.|.+..+.
T Consensus 169 ~~dlI~GlPgqt~e~~~~tl~~~~~l~p~~is~y~L~ 205 (400)
T PRK07379 169 SLDLISGLPHQTLEDWQASLEAAIALNPTHLSCYDLV 205 (400)
T ss_pred EEEeecCCCCCCHHHHHHHHHHHHcCCCCEEEEecce
Confidence 99999999 9999999999999999999999987663
No 84
>PRK09057 coproporphyrinogen III oxidase; Provisional
Probab=99.53 E-value=4.6e-13 Score=135.08 Aligned_cols=168 Identities=13% Similarity=0.172 Sum_probs=132.1
Q ss_pred CccCCCCcCCCCCCCCCCCC---CCcchHHHHHHHHHh----cCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCC--
Q 017200 137 DTCTRGCRFCNVKTSRAPPP---PDPDEPTNVAEAIAS----WGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKP-- 207 (375)
Q Consensus 137 d~C~~~C~FC~v~~~r~~~~---ld~eEi~~~a~al~~----~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p-- 207 (375)
--|...|.||.+.+...... .-.+.+.++++...+ ..++.|.|.||+..-++ .+.+.++++.|++.+|
T Consensus 12 PFC~~kC~yC~f~~~~~~~~~~~~Y~~aL~~Ei~~~~~~~~~~~i~tiy~GGGTPs~l~---~~~L~~ll~~i~~~f~~~ 88 (380)
T PRK09057 12 PFCLAKCPYCDFNSHVRHAIDQARFAAAFLRELATEAARTGPRTLTSIFFGGGTPSLMQ---PETVAALLDAIARLWPVA 88 (380)
T ss_pred CCcCCcCCCCCCcccCcCcCCHHHHHHHHHHHHHHHHHHcCCCCcCeEEeCCCccccCC---HHHHHHHHHHHHHhCCCC
Confidence 46999999999986421111 122444555544332 35788999999866665 5678888999988653
Q ss_pred ---CcEEEeecCCCCCChHHHHHHHHcCcccccccccch-HHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEE
Q 017200 208 ---NMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETV-EELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIML 283 (375)
Q Consensus 208 ---~i~Ie~l~pd~~g~~e~l~~L~~aGldv~~hnlEtv-~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~tkt~imv 283 (375)
.+.+++ .|+-. +.+.++.|+++|++.+..++|+. +++++.|+ |.++.++..+.++.+++. +..++.++|+
T Consensus 89 ~~~eit~E~-~P~~i-~~e~L~~l~~~GvnrislGvQS~~d~vL~~l~-R~~~~~~~~~ai~~~~~~---~~~v~~dli~ 162 (380)
T PRK09057 89 DDIEITLEA-NPTSV-EAGRFRGYRAAGVNRVSLGVQALNDADLRFLG-RLHSVAEALAAIDLAREI---FPRVSFDLIY 162 (380)
T ss_pred CCccEEEEE-CcCcC-CHHHHHHHHHcCCCEEEEecccCCHHHHHHcC-CCCCHHHHHHHHHHHHHh---CccEEEEeec
Confidence 245554 35433 78999999999999999999976 59999999 899999999999999994 5679999999
Q ss_pred ec-CCCHHHHHHHHHHHHHcCCcEEeeecCC
Q 017200 284 GC-GETPDQVVSTMEKVRAAGVDVMTFGQYM 313 (375)
Q Consensus 284 Gl-GET~ee~~etl~~Lrelgvd~v~i~qYl 313 (375)
|+ |+|.+++.++++.+.+++++.|.+.++.
T Consensus 163 GlPgqt~~~~~~~l~~~~~l~p~~is~y~L~ 193 (380)
T PRK09057 163 ARPGQTLAAWRAELKEALSLAADHLSLYQLT 193 (380)
T ss_pred CCCCCCHHHHHHHHHHHHhcCCCeEEeecce
Confidence 99 9999999999999999999999997664
No 85
>KOG4355 consensus Predicted Fe-S oxidoreductase [General function prediction only]
Probab=99.53 E-value=1.3e-13 Score=136.13 Aligned_cols=191 Identities=19% Similarity=0.255 Sum_probs=144.4
Q ss_pred EEEEeeeCCccCCCCcCCCCCCCCCCC-CCCcchHHHHHHHHHhcCCcEEEEEeeeCCCC-CcccHHHHHHHHHHHHHhC
Q 017200 129 TATIMILGDTCTRGCRFCNVKTSRAPP-PPDPDEPTNVAEAIASWGLDYVVITSVDRDDL-ADQGSGHFAQTVRKLKELK 206 (375)
Q Consensus 129 tatfm~i~d~C~~~C~FC~v~~~r~~~-~ld~eEi~~~a~al~~~G~~eIvLTsgdr~dl-~d~G~~~~~~lir~Ik~~~ 206 (375)
-.-++.+.-+|-+.|.||--+..|+-. +.++++++..++..-+.|+.+|-+|+-|...+ .|-|. .+..++.++.+..
T Consensus 187 lieIi~intgclgaCtyckTkharg~l~sy~~dslvervrt~f~egv~eIwltsedTgaygrdig~-slp~ll~klv~~i 265 (547)
T KOG4355|consen 187 LIEIISINTGCLGACTYCKTKHARGLLASYPKDSLVERVRTSFEEGVCEIWLTSEDTGAYGRDIGK-SLPKLLWKLVEVI 265 (547)
T ss_pred ceEEEEeccccccccccccccccccccccCCHHHHHHHHHHHHhcCcEEEEecccccchhhhhhhh-hhHHHHHHHHHhc
Confidence 445667889999999999998887643 58999999999999999999999999886555 23332 3566677776666
Q ss_pred CC---cEEEeecCCCCCChHHHHHHHHc--Ccccccc--c-c-cchHHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCceE
Q 017200 207 PN---MLIEALVPDFRGNNGCVREVAKS--GLNVFAH--N-I-ETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLT 277 (375)
Q Consensus 207 p~---i~Ie~l~pd~~g~~e~l~~L~~a--Gldv~~h--n-l-Etv~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~t 277 (375)
|+ +++..-.|.+ -.|.+++++.- -+.+|.. . + ..+|.++-.|+ |.|...++-.+...+.+..|. +.+
T Consensus 266 Pe~cmlr~gmTnpP~--ilehl~e~a~vlrhp~vYsflhvpvqsgsdsvl~emk-reyc~~dfk~Vvd~LterVPg-i~I 341 (547)
T KOG4355|consen 266 PESCMLRAGMTNPPY--ILEHLEEAAFVLRHPRVYSFLHVPVQSGSDSVLTEMK-REYCNFDFKIVVDFLTERVPG-ITI 341 (547)
T ss_pred chhhhhhhcCCCCch--HHHHHHHHHHHhcCCeEEEEEecccccCchhHHHHHH-HHHhhhhHHHHHHHHHhhCCC-cEE
Confidence 62 3444444444 23444444321 2333332 2 3 46789999999 889889999999999999985 999
Q ss_pred EEeEEEec-CCCHHHHHHHHHHHHHcCCcEEeeecCC-CCCCCCCCccc
Q 017200 278 KTSIMLGC-GETPDQVVSTMEKVRAAGVDVMTFGQYM-RPSKRHMPVSE 324 (375)
Q Consensus 278 kt~imvGl-GET~ee~~etl~~Lrelgvd~v~i~qYl-~P~~~~~~v~~ 324 (375)
.|+||.|| |||+|||.++|+.+++..+-.+.|.||+ ||++...++..
T Consensus 342 ATDiIcgFPtETdeDFeeTmeLv~kYKFPslfInQfyPRpGTPAAkmkk 390 (547)
T KOG4355|consen 342 ATDIICGFPTETDEDFEETMELVRKYKFPSLFINQFYPRPGTPAAKMKK 390 (547)
T ss_pred eeeeeecCCCCchHHHHHHHHHHHHccCchhhhhhcCCCCCChHHhhhc
Confidence 99999999 9999999999999999999999999997 66554444443
No 86
>PRK08898 coproporphyrinogen III oxidase; Provisional
Probab=99.52 E-value=1.2e-12 Score=132.65 Aligned_cols=168 Identities=16% Similarity=0.195 Sum_probs=131.2
Q ss_pred CccCCCCcCCCCCCCCCC-C-CC----CcchHHHHHHHHHh----cCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhC
Q 017200 137 DTCTRGCRFCNVKTSRAP-P-PP----DPDEPTNVAEAIAS----WGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELK 206 (375)
Q Consensus 137 d~C~~~C~FC~v~~~r~~-~-~l----d~eEi~~~a~al~~----~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~ 206 (375)
--|...|.||.+.+.... . .. =.+.+.++++.... ..++-|.|.||+..-++ .+.+.++++.|++.+
T Consensus 27 PFC~~~C~yC~f~~~~~~~~~~~~~~~Y~~~l~~ei~~~~~~~~~~~i~siy~GGGTPs~L~---~~~L~~ll~~i~~~~ 103 (394)
T PRK08898 27 PWCVRKCPYCDFNSHEWKDGGAIPEAAYLDALRADLEQALPLVWGRQVHTVFIGGGTPSLLS---AAGLDRLLSDVRALL 103 (394)
T ss_pred CCccCcCCCCCCcccccCCCCccCHHHHHHHHHHHHHHHHHhccCCceeEEEECCCCcCCCC---HHHHHHHHHHHHHhC
Confidence 469999999999864211 1 11 12445555544322 23678888888876666 577889999998877
Q ss_pred CC-----cEEEeecCCCCCChHHHHHHHHcCcccccccccch-HHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCceEEEe
Q 017200 207 PN-----MLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETV-EELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTS 280 (375)
Q Consensus 207 p~-----i~Ie~l~pd~~g~~e~l~~L~~aGldv~~hnlEtv-~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~tkt~ 280 (375)
|. +.+++ .|+.. +.+.++.|+++|++.+..++|+. +++++.|+ |.++.++..++++.+++. +..+..+
T Consensus 104 ~~~~~~eit~E~-~p~~~-~~e~L~~l~~~GvnrisiGvQS~~~~~L~~l~-R~~~~~~~~~~i~~~~~~---~~~v~~d 177 (394)
T PRK08898 104 PLDPDAEITLEA-NPGTF-EAEKFAQFRASGVNRLSIGIQSFNDAHLKALG-RIHDGAEARAAIEIAAKH---FDNFNLD 177 (394)
T ss_pred CCCCCCeEEEEE-CCCCC-CHHHHHHHHHcCCCeEEEecccCCHHHHHHhC-CCCCHHHHHHHHHHHHHh---CCceEEE
Confidence 42 44454 45433 68999999999999999999975 59999998 899999999999999984 3568999
Q ss_pred EEEec-CCCHHHHHHHHHHHHHcCCcEEeeecCC
Q 017200 281 IMLGC-GETPDQVVSTMEKVRAAGVDVMTFGQYM 313 (375)
Q Consensus 281 imvGl-GET~ee~~etl~~Lrelgvd~v~i~qYl 313 (375)
+|+|+ |+|.+++.++++.+.+++++.|.+.++.
T Consensus 178 lI~GlPgqt~~~~~~~l~~~~~l~p~~is~y~l~ 211 (394)
T PRK08898 178 LMYALPGQTLDEALADVETALAFGPPHLSLYHLT 211 (394)
T ss_pred EEcCCCCCCHHHHHHHHHHHHhcCCCEEEEeeeE
Confidence 99999 9999999999999999999999987774
No 87
>TIGR02668 moaA_archaeal probable molybdenum cofactor biosynthesis protein A, archaeal. This model describes an archaeal family related, and predicted to be functionally equivalent, to molybdenum cofactor biosynthesis protein A (MoaA) of bacteria (see TIGR02666).
Probab=99.52 E-value=5.8e-13 Score=129.72 Aligned_cols=169 Identities=16% Similarity=0.301 Sum_probs=131.1
Q ss_pred EeeeCCccCCCCcCCCCCCCCCC--CCCCcchHHHHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCCCc
Q 017200 132 IMILGDTCTRGCRFCNVKTSRAP--PPPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNM 209 (375)
Q Consensus 132 fm~i~d~C~~~C~FC~v~~~r~~--~~ld~eEi~~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p~i 209 (375)
.+.+++.|+.+|.||........ ..++.+|+.+.++.+...|++.|.||||+.--.++ +.++++.+++. ++
T Consensus 13 ~i~vT~~CNl~C~yC~~~~~~~~~~~~ls~eei~~~i~~~~~~gi~~I~~tGGEPll~~~-----l~~iv~~l~~~--g~ 85 (302)
T TIGR02668 13 RISVTDRCNLSCFYCHMEGEDRSGGNELSPEEIERIVRVASEFGVRKVKITGGEPLLRKD-----LIEIIRRIKDY--GI 85 (302)
T ss_pred EEEEcccccCCCCCCCccccCCCccCcCCHHHHHHHHHHHHHcCCCEEEEECcccccccC-----HHHHHHHHHhC--CC
Confidence 45679999999999988643222 24899999999999999999999999997322222 67788888764 23
Q ss_pred -EEEeecCCCCCChHHHHHHHHcCcccccccccchH-HHHHHhcCCCCCHHHHHHHHHHHHHhCCCCce-EEEeEEEecC
Q 017200 210 -LIEALVPDFRGNNGCVREVAKSGLNVFAHNIETVE-ELQSAVRDHRANFKQSLDVLMMAKDYVPAGTL-TKTSIMLGCG 286 (375)
Q Consensus 210 -~Ie~l~pd~~g~~e~l~~L~~aGldv~~hnlEtv~-rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~-tkt~imvGlG 286 (375)
.+.+.+-... ..+.++.++++|++.++..+++.+ +.|+.++ ++.++++.++.++.+++ .|+. ++..+++--|
T Consensus 86 ~~v~i~TNG~l-l~~~~~~l~~~g~~~v~iSld~~~~~~~~~i~-~~~~~~~vl~~i~~~~~---~G~~~v~i~~v~~~g 160 (302)
T TIGR02668 86 KDVSMTTNGIL-LEKLAKKLKEAGLDRVNVSLDTLDPEKYKKIT-GRGALDRVIEGIESAVD---AGLTPVKLNMVVLKG 160 (302)
T ss_pred ceEEEEcCchH-HHHHHHHHHHCCCCEEEEEecCCCHHHhhhcc-CCCcHHHHHHHHHHHHH---cCCCcEEEEEEEeCC
Confidence 4554442221 356788999999999999999864 8999998 57899999999999999 4664 7777666448
Q ss_pred CCHHHHHHHHHHHHHcCCcEEeeecCC
Q 017200 287 ETPDQVVSTMEKVRAAGVDVMTFGQYM 313 (375)
Q Consensus 287 ET~ee~~etl~~Lrelgvd~v~i~qYl 313 (375)
++++++.+.+++++++++++ .+..|+
T Consensus 161 ~n~~ei~~~~~~~~~~g~~~-~~ie~~ 186 (302)
T TIGR02668 161 INDNEIPDMVEFAAEGGAIL-QLIELM 186 (302)
T ss_pred CCHHHHHHHHHHHHhcCCEE-EEEEEe
Confidence 99999999999999999974 444565
No 88
>TIGR01210 conserved hypothetical protein TIGR01210. This family of exclusively archaeal proteins has no characterized close homologs. Several rounds of PSI-BLAST with a stringent cutoff of 1e-8 shows apparent similarity of the central region of this family to the central regions of the oxygen-independent coproporphyrinogen III dehydrogenase HemN and to other enzymes.
Probab=99.50 E-value=2.5e-12 Score=126.80 Aligned_cols=197 Identities=17% Similarity=0.262 Sum_probs=140.1
Q ss_pred cEEEEeeeCCccCC----CCcCCCCCCCCCCCCCCcchHHHHHHHHHhc-CCcE-----EEEEee---eCCCCCcccHHH
Q 017200 128 ATATIMILGDTCTR----GCRFCNVKTSRAPPPPDPDEPTNVAEAIASW-GLDY-----VVITSV---DRDDLADQGSGH 194 (375)
Q Consensus 128 ~tatfm~i~d~C~~----~C~FC~v~~~r~~~~ld~eEi~~~a~al~~~-G~~e-----IvLTsg---dr~dl~d~G~~~ 194 (375)
.+.+++..+.||+. +|.||++.... ....+++++.+.++.+.+. +.++ -++|+| |...++ .+.
T Consensus 14 ~~~~~i~~srGC~~~~~g~C~FC~~~~~~-~r~~s~e~i~~~i~~~~~~~~~~~~~~~ikif~sgsf~D~~~~~---~~~ 89 (313)
T TIGR01210 14 KSLTIILRTRGCYWAREGGCYMCGYLADS-SPEVTEENLINQFDEAIEKYKEKIKDFVIKIFTSGSFLDDREVP---KET 89 (313)
T ss_pred ceEEEEEeCCCCCCCCCCcCccCCCCCCC-CCCCChhHHHHHHHHHHHHhhcccccEEEEEecCCCcCCcCcCC---HHH
Confidence 35666777999999 69999876432 1236888888888776643 4332 236666 322333 456
Q ss_pred HHHHHHHHHHhCC--CcEEEeecCCCCCChHHHHHHHHcCcc-cccccccch-HHHHH-HhcCCCCCHHHHHHHHHHHHH
Q 017200 195 FAQTVRKLKELKP--NMLIEALVPDFRGNNGCVREVAKSGLN-VFAHNIETV-EELQS-AVRDHRANFKQSLDVLMMAKD 269 (375)
Q Consensus 195 ~~~lir~Ik~~~p--~i~Ie~l~pd~~g~~e~l~~L~~aGld-v~~hnlEtv-~rl~~-~mr~r~~s~~~~l~vl~~ak~ 269 (375)
+.++++.|++... .+.++ ..|+.. +.+.|+.|+++|++ .+..++|+. +++++ .|+ ++++.++..+.++.+++
T Consensus 90 ~~~i~~~l~~~~~~~~i~~e-srpd~i-~~e~L~~l~~aG~~~~v~iG~ES~~d~~L~~~in-Kg~t~~~~~~ai~~~~~ 166 (313)
T TIGR01210 90 RNYIFEKIAQRDNLKEVVVE-SRPEFI-DEEKLEELRKIGVNVEVAVGLETANDRIREKSIN-KGSTFEDFIRAAELARK 166 (313)
T ss_pred HHHHHHHHHhcCCcceEEEE-eCCCcC-CHHHHHHHHHcCCCEEEEEecCcCCHHHHHHhhC-CCCCHHHHHHHHHHHHH
Confidence 7778888876321 23444 356655 78999999999998 699999985 59995 799 89999999999999999
Q ss_pred hCCCCceEEEeEEEec-CC----CHHHHHHHHHHHHHcCCcEEeeecCC-CCCCCCCCcc------ccCCH---HHHHHH
Q 017200 270 YVPAGTLTKTSIMLGC-GE----TPDQVVSTMEKVRAAGVDVMTFGQYM-RPSKRHMPVS------EYITP---EAFERY 334 (375)
Q Consensus 270 ~~p~Gl~tkt~imvGl-GE----T~ee~~etl~~Lrelgvd~v~i~qYl-~P~~~~~~v~------~~v~p---e~~~~l 334 (375)
.|+.++.++|+|+ |+ +.+++.++++.+.+++ +.+.+.+.. +| ++++. .|..| +..+.|
T Consensus 167 ---~Gi~v~~~~i~G~P~~se~ea~ed~~~ti~~~~~l~-~~vs~~~l~v~~---gT~l~~~~~~G~~~pp~lws~~e~l 239 (313)
T TIGR01210 167 ---YGAGVKAYLLFKPPFLSEKEAIADMISSIRKCIPVT-DTVSINPTNVQK---GTLVEFLWNRGLYRPPWLWSVAEVL 239 (313)
T ss_pred ---cCCcEEEEEEecCCCCChhhhHHHHHHHHHHHHhcC-CcEEEECCEEeC---CCHHHHHHHcCCCCCCCHHHHHHHH
Confidence 5899999999999 64 5567778999999998 888875432 33 23322 23345 566667
Q ss_pred HHHH
Q 017200 335 RALG 338 (375)
Q Consensus 335 ~~~a 338 (375)
++..
T Consensus 240 ~e~~ 243 (313)
T TIGR01210 240 KEAK 243 (313)
T ss_pred HHHH
Confidence 6664
No 89
>PRK06294 coproporphyrinogen III oxidase; Provisional
Probab=99.49 E-value=5.7e-13 Score=134.01 Aligned_cols=217 Identities=12% Similarity=0.199 Sum_probs=146.1
Q ss_pred EEEeeeCCccCCCCcCCCCCCCCC-CCCCC--cchHHHH-HHHHHh----cCCcEEEEEeeeCCCCCcccHHHHHHHHHH
Q 017200 130 ATIMILGDTCTRGCRFCNVKTSRA-PPPPD--PDEPTNV-AEAIAS----WGLDYVVITSVDRDDLADQGSGHFAQTVRK 201 (375)
Q Consensus 130 atfm~i~d~C~~~C~FC~v~~~r~-~~~ld--~eEi~~~-a~al~~----~G~~eIvLTsgdr~dl~d~G~~~~~~lir~ 201 (375)
.-|+-+ --|...|.||.+..... ....+ .+.++++ .+.... ..++.|.+.||+..-++ .+++.++++.
T Consensus 8 ~lYiHI-PFC~~~C~yC~f~~~~~~~~~~~~y~~~l~~E~~~~~~~~~~~~~i~~iy~GGGTPs~l~---~~~l~~ll~~ 83 (370)
T PRK06294 8 ALYIHI-PFCTKKCHYCSFYTIPYKEESVSLYCNAVLKEGLKKLAPLRCSHFIDTVFFGGGTPSLVP---PALIQDILKT 83 (370)
T ss_pred EEEEEe-CCccCcCCCCcCcccCCCccCHHHHHHHHHHHHHHHhhhhccCCceeEEEECCCccccCC---HHHHHHHHHH
Confidence 344433 47999999999876421 11111 1222222 222221 24677888888765555 4677888888
Q ss_pred HHHh-CCCcEEEeecCCCCCChHHHHHHHHcCcccccccccch-HHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCce-EE
Q 017200 202 LKEL-KPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETV-EELQSAVRDHRANFKQSLDVLMMAKDYVPAGTL-TK 278 (375)
Q Consensus 202 Ik~~-~p~i~Ie~l~pd~~g~~e~l~~L~~aGldv~~hnlEtv-~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~-tk 278 (375)
|++. ...+.+++ .|+.. +.+.++.++++|++.+..++|+. +++++.+. |.++.++.++.++.+++ .|+. ++
T Consensus 84 i~~~~~~eit~E~-~P~~~-~~~~l~~l~~~G~nrislGvQS~~~~~L~~l~-R~~~~~~~~~ai~~~~~---~g~~~v~ 157 (370)
T PRK06294 84 LEAPHATEITLEA-NPENL-SESYIRALALTGINRISIGVQTFDDPLLKLLG-RTHSSSKAIDAVQECSE---HGFSNLS 157 (370)
T ss_pred HHhCCCCeEEEEe-CCCCC-CHHHHHHHHHCCCCEEEEccccCCHHHHHHcC-CCCCHHHHHHHHHHHHH---cCCCeEE
Confidence 8653 12455553 45433 78999999999999999999976 59999999 89999999999999999 5774 89
Q ss_pred EeEEEec-CCCHHHHHHHHHHHHHcCCcEEeeecCC-CCCCCCCC-c----cccCCHH----HHHHHHHHHHHhhhhhhc
Q 017200 279 TSIMLGC-GETPDQVVSTMEKVRAAGVDVMTFGQYM-RPSKRHMP-V----SEYITPE----AFERYRALGMEMGFRYVA 347 (375)
Q Consensus 279 t~imvGl-GET~ee~~etl~~Lrelgvd~v~i~qYl-~P~~~~~~-v----~~~v~pe----~~~~l~~~a~~~gf~~~~ 347 (375)
.++|+|+ |||.+++.++++.+.+++++.|.+..+. .|.+.-.+ . ......+ .++...+.-.+.||....
T Consensus 158 ~Dli~GlPgqt~~~~~~~l~~~~~l~~~~is~y~l~~~~gT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~Gy~~ye 237 (370)
T PRK06294 158 IDLIYGLPTQSLSDFIVDLHQAITLPITHISLYNLTIDPHTSFYKHRKRLLPSIADEEILAEMSLAAEELLTSQGFTRYE 237 (370)
T ss_pred EEeecCCCCCCHHHHHHHHHHHHccCCCeEEEeeeEecCCChHHHHHhcCCCCCcCHHHHHHHHHHHHHHHHHcCCCeee
Confidence 9999999 9999999999999999999999987663 34321100 0 0011222 233344555667886665
Q ss_pred cchhhhhhc
Q 017200 348 SGPMVRSSY 356 (375)
Q Consensus 348 sgp~vrssy 356 (375)
-.-++|..|
T Consensus 238 is~fa~~~~ 246 (370)
T PRK06294 238 LASYAKPQA 246 (370)
T ss_pred eeeeeCCCc
Confidence 444555433
No 90
>PRK06582 coproporphyrinogen III oxidase; Provisional
Probab=99.47 E-value=1.5e-12 Score=131.92 Aligned_cols=175 Identities=10% Similarity=0.153 Sum_probs=131.5
Q ss_pred EEEeeeCCccCCCCcCCCCCCCCCCCCCCc----chHHHHHHHHH----hcCCcEEEEEeeeCCCCCcccHHHHHHHHHH
Q 017200 130 ATIMILGDTCTRGCRFCNVKTSRAPPPPDP----DEPTNVAEAIA----SWGLDYVVITSVDRDDLADQGSGHFAQTVRK 201 (375)
Q Consensus 130 atfm~i~d~C~~~C~FC~v~~~r~~~~ld~----eEi~~~a~al~----~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~ 201 (375)
.-|+-+ --|...|.||.+.+..... ... +-+.++++... ...++.|.|.||+..-++ .+.+.++++.
T Consensus 13 ~lYiHi-PFC~~~C~yC~f~~~~~~~-~~~~~Y~~aL~~Ei~~~~~~~~~~~i~tiy~GGGTPs~l~---~~~l~~ll~~ 87 (390)
T PRK06582 13 SIYIHW-PFCLSKCPYCDFNSHVAST-IDHNQWLKSYEKEIEYFKDIIQNKYIKSIFFGGGTPSLMN---PVIVEGIINK 87 (390)
T ss_pred EEEEEe-CCCcCcCCCCCCeeccCCC-CCHHHHHHHHHHHHHHHHHHccCCceeEEEECCCccccCC---HHHHHHHHHH
Confidence 344433 5899999999997642111 111 12222333222 234788999998765555 4667788888
Q ss_pred HHHhC--C---CcEEEeecCCCCCChHHHHHHHHcCcccccccccch-HHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCc
Q 017200 202 LKELK--P---NMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETV-EELQSAVRDHRANFKQSLDVLMMAKDYVPAGT 275 (375)
Q Consensus 202 Ik~~~--p---~i~Ie~l~pd~~g~~e~l~~L~~aGldv~~hnlEtv-~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl 275 (375)
|++.+ + .+.+++ .|+.. +.+.++.|+++|++.+..++|+. +++++.+. |.++.++.++.++.+++. +.
T Consensus 88 i~~~~~~~~~~eitiE~-nP~~~-~~e~l~~l~~~GvnRiSiGvQS~~d~~L~~lg-R~h~~~~~~~ai~~~~~~---~~ 161 (390)
T PRK06582 88 ISNLAIIDNQTEITLET-NPTSF-ETEKFKAFKLAGINRVSIGVQSLKEDDLKKLG-RTHDCMQAIKTIEAANTI---FP 161 (390)
T ss_pred HHHhCCCCCCCEEEEEe-CCCcC-CHHHHHHHHHCCCCEEEEECCcCCHHHHHHcC-CCCCHHHHHHHHHHHHHh---CC
Confidence 87753 2 355554 45433 78999999999999999999976 59999999 899999999999999984 45
Q ss_pred eEEEeEEEec-CCCHHHHHHHHHHHHHcCCcEEeeecCC-CC
Q 017200 276 LTKTSIMLGC-GETPDQVVSTMEKVRAAGVDVMTFGQYM-RP 315 (375)
Q Consensus 276 ~tkt~imvGl-GET~ee~~etl~~Lrelgvd~v~i~qYl-~P 315 (375)
.++.++|+|+ |+|.+++.++++.+.+++++.|.+.++. .|
T Consensus 162 ~v~~DlI~GlPgqt~e~~~~~l~~~~~l~p~his~y~L~i~~ 203 (390)
T PRK06582 162 RVSFDLIYARSGQTLKDWQEELKQAMQLATSHISLYQLTIEK 203 (390)
T ss_pred cEEEEeecCCCCCCHHHHHHHHHHHHhcCCCEEEEecCEEcc
Confidence 7999999999 9999999999999999999999997664 44
No 91
>PRK05301 pyrroloquinoline quinone biosynthesis protein PqqE; Provisional
Probab=99.46 E-value=1.8e-11 Score=123.10 Aligned_cols=171 Identities=15% Similarity=0.204 Sum_probs=132.5
Q ss_pred EEEEeeeCCccCCCCcCCCCCCC--CCCCCCCcchHHHHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhC
Q 017200 129 TATIMILGDTCTRGCRFCNVKTS--RAPPPPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELK 206 (375)
Q Consensus 129 tatfm~i~d~C~~~C~FC~v~~~--r~~~~ld~eEi~~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~ 206 (375)
...++.+++.|+.+|.||..... +....++.+++.+.++.+.+.|+..|.||||+---.+ ++.++++.+++.
T Consensus 16 ~~l~i~iT~~CNl~C~~C~~~~~~~~~~~~~~~e~~~~ii~~~~~~g~~~v~~~GGEPll~~-----~~~~il~~~~~~- 89 (378)
T PRK05301 16 LWLLAELTYRCPLQCPYCSNPLDLARHGAELSTEEWIRVLREARALGALQLHFSGGEPLLRK-----DLEELVAHAREL- 89 (378)
T ss_pred eEEEEEecCccCcCCCCCCCccccccccCCCCHHHHHHHHHHHHHcCCcEEEEECCccCCch-----hHHHHHHHHHHc-
Confidence 55556789999999999987542 2223589999999999999999999999998742222 267888888764
Q ss_pred CCcEEEeecCCCCCChHHHHHHHHcCcccccccccch-HHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEec
Q 017200 207 PNMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETV-EELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGC 285 (375)
Q Consensus 207 p~i~Ie~l~pd~~g~~e~l~~L~~aGldv~~hnlEtv-~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~tkt~imvGl 285 (375)
++.+.+.+-...-+.+.++.|++.|++.+...+++. ++.+..++..+.+|++.++.++.+++ .|+.+...+++ .
T Consensus 90 -g~~~~i~TNG~ll~~~~~~~L~~~g~~~v~iSldg~~~e~~d~irg~~g~f~~~~~~i~~l~~---~g~~v~i~~vv-~ 164 (378)
T PRK05301 90 -GLYTNLITSGVGLTEARLAALKDAGLDHIQLSFQDSDPELNDRLAGTKGAFAKKLAVARLVKA---HGYPLTLNAVI-H 164 (378)
T ss_pred -CCcEEEECCCccCCHHHHHHHHHcCCCEEEEEecCCCHHHHHHHcCCCchHHHHHHHHHHHHH---CCCceEEEEEe-e
Confidence 355554443222267899999999999999999986 58999998544689999999999998 46655444332 3
Q ss_pred CCCHHHHHHHHHHHHHcCCcEEeee
Q 017200 286 GETPDQVVSTMEKVRAAGVDVMTFG 310 (375)
Q Consensus 286 GET~ee~~etl~~Lrelgvd~v~i~ 310 (375)
..+.+++.+.+++++++|++.+.+.
T Consensus 165 ~~N~~~i~~~~~~~~~lgv~~i~~~ 189 (378)
T PRK05301 165 RHNIDQIPRIIELAVELGADRLELA 189 (378)
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEEe
Confidence 7899999999999999999998874
No 92
>PRK08629 coproporphyrinogen III oxidase; Provisional
Probab=99.44 E-value=8.9e-12 Score=127.94 Aligned_cols=178 Identities=10% Similarity=0.145 Sum_probs=126.0
Q ss_pred EEEeeeCCccCCCCcCCCCCCC-CCCCC--CCcchHHHHHHHHHhcCC--cEEEEEeeeCCCCCcccHHHHHHHHHHHHH
Q 017200 130 ATIMILGDTCTRGCRFCNVKTS-RAPPP--PDPDEPTNVAEAIASWGL--DYVVITSVDRDDLADQGSGHFAQTVRKLKE 204 (375)
Q Consensus 130 atfm~i~d~C~~~C~FC~v~~~-r~~~~--ld~eEi~~~a~al~~~G~--~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~ 204 (375)
.-|+-+ --|...|.||.+.+. ..... .-.+.+.++++.+++.|. ..|.+-||+ +.+. .+.+.++++.|++
T Consensus 54 ~LYvHI-PFC~~~C~yC~f~~~~~~~~~~~~Y~~~L~~Ei~~~~~~~~~~~siy~GGGT-Ps~l---~~~L~~ll~~i~~ 128 (433)
T PRK08629 54 MLYAHV-PFCHTLCPYCSFHRFYFKEDKARAYFISLRKEMEMVKELGYDFESMYVGGGT-TTIL---EDELAKTLELAKK 128 (433)
T ss_pred EEEEEe-CCccCcCCCCCCcCcCCCcchHHHHHHHHHHHHHHHHhcCCceEEEEECCCc-cccC---HHHHHHHHHHHHH
Confidence 444433 369999999999864 21111 124667777776666553 455555554 3332 3567888888887
Q ss_pred hCC--CcEEEeecCCCCCChHHHHHHHHcCcccccccccch-HHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeE
Q 017200 205 LKP--NMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETV-EELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSI 281 (375)
Q Consensus 205 ~~p--~i~Ie~l~pd~~g~~e~l~~L~~aGldv~~hnlEtv-~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~tkt~i 281 (375)
.++ .+.++ ..|+.. +.+.++.++++ ++.+..++|+. +++++.|+ |.+++.+..++++.+++....+..++.++
T Consensus 129 ~f~i~eis~E-~~P~~l-t~e~L~~l~~~-vnrlsiGVQS~~d~vLk~~g-R~h~~~~~~~~~~~l~~~~~~~~~v~~Dl 204 (433)
T PRK08629 129 LFSIKEVSCE-SDPNHL-DPPKLKQLKGL-IDRLSIGVQSFNDDILKMVD-RYEKFGSGQETFEKIMKAKGLFPIINVDL 204 (433)
T ss_pred hCCCceEEEE-eCcccC-CHHHHHHHHHh-CCeEEEecCcCCHHHHHHcC-CCCChhHHHHHHHHHHHHhccCCeEEEEE
Confidence 764 24444 356544 78999999999 99999999976 59999998 88877666555544444321223579999
Q ss_pred EEec-CCCHHHHHHHHHHHHHcCCcEEeeecCC-CCC
Q 017200 282 MLGC-GETPDQVVSTMEKVRAAGVDVMTFGQYM-RPS 316 (375)
Q Consensus 282 mvGl-GET~ee~~etl~~Lrelgvd~v~i~qYl-~P~ 316 (375)
|+|| |||.+++.++++.+.+++++.|++.+++ .|.
T Consensus 205 I~GlPgqT~e~~~~~l~~~~~l~p~~is~y~L~~~~~ 241 (433)
T PRK08629 205 IFNFPGQTDEVLQHDLDIAKRLDPRQITTYPLMKSHQ 241 (433)
T ss_pred EccCCCCCHHHHHHHHHHHHhCCCCEEEEccceeccC
Confidence 9999 9999999999999999999999998775 453
No 93
>COG2896 MoaA Molybdenum cofactor biosynthesis enzyme [Coenzyme metabolism]
Probab=99.44 E-value=6.3e-12 Score=123.62 Aligned_cols=174 Identities=17% Similarity=0.260 Sum_probs=133.8
Q ss_pred EEEEe--eeCCccCCCCcCCCCCC-C-CCCC--CCCcchHHHHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHH
Q 017200 129 TATIM--ILGDTCTRGCRFCNVKT-S-RAPP--PPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKL 202 (375)
Q Consensus 129 tatfm--~i~d~C~~~C~FC~v~~-~-r~~~--~ld~eEi~~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~I 202 (375)
..+++ .++|.|+.+|.||...- . -.|. -|++||+.+.+++..+.|++.|.||||.. -+. ..+.++|+.|
T Consensus 9 ~~~~LRiSvTdrCNfrC~YCm~eg~~~~~~~~~~Ls~eei~~~~~~~~~~Gv~kvRlTGGEP-llR----~dl~eIi~~l 83 (322)
T COG2896 9 PVRYLRISVTDRCNFRCTYCMPEGPLAFLPKEELLSLEEIRRLVRAFAELGVEKVRLTGGEP-LLR----KDLDEIIARL 83 (322)
T ss_pred EeceEEEEEecCcCCcccccCCCCCcccCcccccCCHHHHHHHHHHHHHcCcceEEEeCCCc-hhh----cCHHHHHHHH
Confidence 56665 46999999999999876 2 1232 48999999999999999999999999962 121 1266778888
Q ss_pred HHhCCCcEEEeecCCCCCChHHHHHHHHcCcccccccccchH-HHHHHhcCCCCCHHHHHHHHHHHHHhCCCCc-eEEEe
Q 017200 203 KELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETVE-ELQSAVRDHRANFKQSLDVLMMAKDYVPAGT-LTKTS 280 (375)
Q Consensus 203 k~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGldv~~hnlEtv~-rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl-~tkt~ 280 (375)
++. .--.|..-+-.+. -....+.|++||++.++..+++.+ +.|.+|. +...+++.++-++.|.+ .|+ ++|-+
T Consensus 84 ~~~-~~~~islTTNG~~-L~~~a~~Lk~AGl~rVNVSLDsld~e~f~~IT-~~~~~~~Vl~GI~~A~~---~Gl~pVKlN 157 (322)
T COG2896 84 ARL-GIRDLSLTTNGVL-LARRAADLKEAGLDRVNVSLDSLDPEKFRKIT-GRDRLDRVLEGIDAAVE---AGLTPVKLN 157 (322)
T ss_pred hhc-ccceEEEecchhh-HHHHHHHHHHcCCcEEEeecccCCHHHHHHHh-CCCcHHHHHHHHHHHHH---cCCCceEEE
Confidence 764 1112332221111 367889999999999999999876 9999999 56669999999999999 577 48888
Q ss_pred EEEecCCCHHHHHHHHHHHHHcCCcEEeeecCCC
Q 017200 281 IMLGCGETPDQVVSTMEKVRAAGVDVMTFGQYMR 314 (375)
Q Consensus 281 imvGlGET~ee~~etl~~Lrelgvd~v~i~qYl~ 314 (375)
+.|==|-+++|+.+.+++.++.|.+ +.|--||.
T Consensus 158 ~Vv~kgvNd~ei~~l~e~~~~~~~~-lrfIE~m~ 190 (322)
T COG2896 158 TVLMKGVNDDEIEDLLEFAKERGAQ-LRFIELMP 190 (322)
T ss_pred EEEecCCCHHHHHHHHHHHhhcCCc-eEEEEEee
Confidence 8876689999999999999999984 33445663
No 94
>COG1032 Fe-S oxidoreductase [Energy production and conversion]
Probab=99.43 E-value=2.3e-12 Score=131.32 Aligned_cols=182 Identities=20% Similarity=0.263 Sum_probs=128.1
Q ss_pred EEEEeeeCCccCCCCcCCCCCCCCCCCCCCcchHHHHHHHHHhcCCcEEEEEeeeCCCCCccc--HHHHHHHHH-HHHHh
Q 017200 129 TATIMILGDTCTRGCRFCNVKTSRAPPPPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQG--SGHFAQTVR-KLKEL 205 (375)
Q Consensus 129 tatfm~i~d~C~~~C~FC~v~~~r~~~~ld~eEi~~~a~al~~~G~~eIvLTsgdr~dl~d~G--~~~~~~lir-~Ik~~ 205 (375)
....+.++.||+++|+||.+.........+++.+++.++.+.+.|++.+.+..++.-.+...+ .....+++. .+.+.
T Consensus 198 ~~~~ve~~RGCp~~C~FC~~~~~~~~r~~~~~~v~~ei~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~l~~~~~~~ 277 (490)
T COG1032 198 RAFSVETSRGCPRGCRFCSITKHFKYRRRRPERVVEEIKELIEEGGKRVVFFVDDIFLYGSPALNDEKRFELLSLELIER 277 (490)
T ss_pred eEEEEEeccCCCCCCCCCCCcccccccCCCHHHHHHHHHHHHHHhhhcCcccccceeecCCccccchhhcccchHHHHHH
Confidence 466677899999999999998642123577888888888888888877664444322111100 122233332 23322
Q ss_pred C-C-CcEEEe----ecCCCCCChHHHHHHHHcCcccccccccc-hHHHHHHhcCCCCCHHHHHH-HHHHHHHhCCCCceE
Q 017200 206 K-P-NMLIEA----LVPDFRGNNGCVREVAKSGLNVFAHNIET-VEELQSAVRDHRANFKQSLD-VLMMAKDYVPAGTLT 277 (375)
Q Consensus 206 ~-p-~i~Ie~----l~pd~~g~~e~l~~L~~aGldv~~hnlEt-v~rl~~~mr~r~~s~~~~l~-vl~~ak~~~p~Gl~t 277 (375)
. + .-.+.. +.+|...+.+.++.+..+|...+..++|+ ++++++.++ ++.+.++.++ .++.+++ .|+.+
T Consensus 278 ~~~~~~~~~~~~~~~r~d~~~~~~~~~~~~~~g~~~~~iG~Esgs~~~l~~~~-k~~~~~~~~~~a~~~~~~---~~~~~ 353 (490)
T COG1032 278 GLRKGCRVHISAPSLRADTVTDEELLKLLREAGLRRVYIGIESGSEELLKKIN-KGITTEEVLEEAVKIAKE---HGLRV 353 (490)
T ss_pred hcccCceeeeeccccCchhcCHHHHHHHHhhCCCcceEEeccCCCHHHHHHHh-CCCChHHHHHHHHHHHHh---CCcee
Confidence 2 1 112222 23344323778888899999999999996 569999999 8999999995 8999888 57889
Q ss_pred EEeEEEec-CCCHHHHHHH---HHHHHHcCCc-EEeeecCCCC
Q 017200 278 KTSIMLGC-GETPDQVVST---MEKVRAAGVD-VMTFGQYMRP 315 (375)
Q Consensus 278 kt~imvGl-GET~ee~~et---l~~Lrelgvd-~v~i~qYl~P 315 (375)
+.++|+|+ |||++++.++ ++.+++.+.. .+.+ .++.|
T Consensus 354 ~~~~i~G~pget~ed~~~t~~~~~~~~~~~~~~~~~~-~~~~p 395 (490)
T COG1032 354 KLYFIVGLPGETEEDVKETIELAKFIKKLGPKLYVSP-SPFVP 395 (490)
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHHHhCccceEEE-eeeeC
Confidence 99999999 9999999999 7899999986 5655 34455
No 95
>TIGR01290 nifB nitrogenase cofactor biosynthesis protein NifB. This model describes NifB, a protein required for the biosynthesis of the iron-molybdenum (or iron-vanadium) cofactor used by the nitrogen-fixing enzyme nitrogenase. Archaeal homologs lack the most C-terminal region and score between the trusted and noise cutoffs of this model.
Probab=99.41 E-value=5.5e-11 Score=122.39 Aligned_cols=215 Identities=17% Similarity=0.218 Sum_probs=147.6
Q ss_pred ccccCCCCCCccEEEEeeeCCccCCCCcCCCCCCC-----CC---CCCCCcchHHHHHHHHHhc--CCcEEEEEe-eeCC
Q 017200 117 GECWSGGETGTATATIMILGDTCTRGCRFCNVKTS-----RA---PPPPDPDEPTNVAEAIASW--GLDYVVITS-VDRD 185 (375)
Q Consensus 117 ~ec~~~~~~~~~tatfm~i~d~C~~~C~FC~v~~~-----r~---~~~ld~eEi~~~a~al~~~--G~~eIvLTs-gdr~ 185 (375)
..||+...|...-.-.+.++.+|+.+|.||.-+.. +. ...++++|+++.++.+.+. +++.|.|+| |+--
T Consensus 12 hpc~~~~~~~~~~r~~~~vt~~CNl~C~yC~~~~~~~~esrpg~~~~~Ltpee~~~~i~~v~~~~~~~~~V~iaG~GEPL 91 (442)
T TIGR01290 12 HPCYSVEAHHYFARMHLAVAPACNIQCNYCNRKYDCANESRPGVVSELLTPEQALRKARQVAAEIPQLSVVGIAGPGDPL 91 (442)
T ss_pred CCCCChhhccCcCEEEEecCCCCCCcCcCCCCCCCCCcCCCCccccccCCHHHHHHHHHHHHHhcCCCCEEEEecCCCcc
Confidence 57887544444445557789999999999996532 21 1238999999999988764 678899998 6532
Q ss_pred CCCcccHHHHHHHHHHHHHhCCCcEEEeecCCCCCChHHHHHHHHcCcccccccccchH-HHHHHh----cCC--CCC--
Q 017200 186 DLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETVE-ELQSAV----RDH--RAN-- 256 (375)
Q Consensus 186 dl~d~G~~~~~~lir~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGldv~~hnlEtv~-rl~~~m----r~r--~~s-- 256 (375)
..+ +...++++.+++..|++.+.+.+-.+. ..+.++.|++.|+|.+...+..++ +++.++ +.+ +++
T Consensus 92 l~~----e~~~~~l~~~~~~~~~i~i~lsTNG~~-l~e~i~~L~~~gvd~V~islka~d~e~~~~Iy~~v~~~g~~~tG~ 166 (442)
T TIGR01290 92 ANI----GKTFQTLELVARQLPDVKLCLSTNGLM-LPEHVDRLVDLGVGHVTITINAIDPAVGEKIYPWVWYEGERYTGR 166 (442)
T ss_pred cCc----cccHHHHHHHHHhcCCCeEEEECCCCC-CHHHHHHHHHCCCCeEEEeccCCCHHHHhhcchhhccccccccCc
Confidence 222 235678888888888898887765443 478899999999998888887653 666554 211 121
Q ss_pred ------HHHHHHHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcCCcEEeeecCC-CCC-CCCCCcc--ccC
Q 017200 257 ------FKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQYM-RPS-KRHMPVS--EYI 326 (375)
Q Consensus 257 ------~~~~l~vl~~ak~~~p~Gl~tkt~imvGlGET~ee~~etl~~Lrelgvd~v~i~qYl-~P~-~~~~~v~--~~v 326 (375)
++..++.|+.+.+ .|+.++..+++==|.+++|+.+..+++++++++.+.+.+|. .|. ....++. +..
T Consensus 167 ~~~~il~e~~l~~l~~l~~---~G~~v~v~~vlIpGiND~~i~~l~~~~~~lg~~~~nl~p~~~~p~~G~~~~~~~~~~p 243 (442)
T TIGR01290 167 EAADLLIERQLEGLEKLTE---RGILVKVNSVLIPGINDEHLVEVSKQVKELGAFLHNVMPLISAPEHGTVYGLNGQREP 243 (442)
T ss_pred chHHHHHHHHHHHHHHHHh---CCCeEEEEEEeeCCcCHHHHHHHHHHHHhCCCcEEEeecCCCccccCCccCcCCCCCc
Confidence 4566788888877 46766666555457788999999999999999877776664 231 0111121 335
Q ss_pred CHHHHHHHHHHHH
Q 017200 327 TPEAFERYRALGM 339 (375)
Q Consensus 327 ~pe~~~~l~~~a~ 339 (375)
++++++.+++...
T Consensus 244 s~e~l~~~~~~~~ 256 (442)
T TIGR01290 244 DPDELAALRDRLE 256 (442)
T ss_pred CHHHHHHHHHHHH
Confidence 6677777766543
No 96
>TIGR02109 PQQ_syn_pqqE coenzyme PQQ biosynthesis protein E. This model describes coenzyme PQQ biosynthesis protein E, a gene required for the biosynthesis of pyrrolo-quinoline-quinone (coenzyme PQQ). PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases.
Probab=99.37 E-value=9e-11 Score=116.99 Aligned_cols=170 Identities=17% Similarity=0.250 Sum_probs=130.2
Q ss_pred EEEEeeeCCccCCCCcCCCCCCC--CCCCCCCcchHHHHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhC
Q 017200 129 TATIMILGDTCTRGCRFCNVKTS--RAPPPPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELK 206 (375)
Q Consensus 129 tatfm~i~d~C~~~C~FC~v~~~--r~~~~ld~eEi~~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~ 206 (375)
...++.+++.|+.+|.||..... +....++.+++.+.++++.+.|+..|.||||+---.+| |.++++.+++.
T Consensus 7 ~~l~ieiT~~CNl~C~~C~~~~~~~~~~~~l~~e~~~~ii~~~~~~g~~~v~~~GGEPll~~~-----~~~ii~~~~~~- 80 (358)
T TIGR02109 7 LWLLAELTHRCPLQCPYCSNPLELARRKAELTTEEWTDVLTQAAELGVLQLHFSGGEPLARPD-----LVELVAHARRL- 80 (358)
T ss_pred cEEEEeeccccCcCCCCCCCChhcccccCCCCHHHHHHHHHHHHhcCCcEEEEeCcccccccc-----HHHHHHHHHHc-
Confidence 34456689999999999987532 11235899999999999999999999999997432232 67888888765
Q ss_pred CCcEEEeecCCCCCChHHHHHHHHcCcccccccccchH-HHHHHhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEec
Q 017200 207 PNMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETVE-ELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGC 285 (375)
Q Consensus 207 p~i~Ie~l~pd~~g~~e~l~~L~~aGldv~~hnlEtv~-rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~tkt~imvGl 285 (375)
++.+.+.+-...-+.+.++.|+++|++.+...+++.+ +.+.+++..+.+|++.++.++.+++ .|+.+...+++ .
T Consensus 81 -g~~~~l~TNG~ll~~e~~~~L~~~g~~~v~iSldg~~~e~~d~~rg~~g~f~~v~~~i~~l~~---~g~~v~v~~vv-~ 155 (358)
T TIGR02109 81 -GLYTNLITSGVGLTEARLDALADAGLDHVQLSFQGVDEALADRIAGYKNAFEQKLAMARAVKA---AGLPLTLNFVI-H 155 (358)
T ss_pred -CCeEEEEeCCccCCHHHHHHHHhCCCCEEEEeCcCCCHHHHHHhcCCccHHHHHHHHHHHHHh---CCCceEEEEEe-c
Confidence 3555555533322688999999999999999999874 8888888445679999999999998 46655433332 2
Q ss_pred CCCHHHHHHHHHHHHHcCCcEEee
Q 017200 286 GETPDQVVSTMEKVRAAGVDVMTF 309 (375)
Q Consensus 286 GET~ee~~etl~~Lrelgvd~v~i 309 (375)
..+.+++.+.+++++++|++.+.+
T Consensus 156 ~~N~~~l~~~~~~~~~lg~~~i~~ 179 (358)
T TIGR02109 156 RHNIDQIPEIIELAIELGADRVEL 179 (358)
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEE
Confidence 789999999999999999998876
No 97
>COG1242 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=99.31 E-value=1.4e-10 Score=111.02 Aligned_cols=194 Identities=20% Similarity=0.298 Sum_probs=122.4
Q ss_pred ccHHHHHHHHhcc---Ch--hhhhhhcCCCCcccccCCCCCCccEEEEeeeCCccCCCCcCCCCCCCCCCC--C-CCc-c
Q 017200 90 DKYVQIKKKLREL---KL--HTVCEEAKCPNLGECWSGGETGTATATIMILGDTCTRGCRFCNVKTSRAPP--P-PDP-D 160 (375)
Q Consensus 90 ~~~~~~~~~l~~~---~L--~tvceeA~cpn~~ec~~~~~~~~~tatfm~i~d~C~~~C~FC~v~~~r~~~--~-ld~-e 160 (375)
..|..+...|++. +. .++-....|||+....+ ..+|.||+...+.... + .+. +
T Consensus 6 k~y~t~~~~lr~~fg~Kv~Kv~ld~GF~CPNRDGti~------------------rGGCtFC~~~g~~d~~~~~~~~i~~ 67 (312)
T COG1242 6 KLYYTLNDYLREKFGEKVFKVTLDGGFSCPNRDGTIG------------------RGGCTFCSVAGSGDFAGQPKISIAE 67 (312)
T ss_pred hHHHHHHHHHHHHhCCeeEEEeccCCCCCCCCCCccc------------------CCceeeecCCCCCccccCcccCHHH
Confidence 4466666666643 22 45667789999985444 3579999988653111 1 232 3
Q ss_pred hHHHHHHHHH-hcCC-cEEE-EEeeeCCCCCcccHHHHHHHHHHHHHhCCCc-EEEee-cCCCCCChHHHHHHHHcC--c
Q 017200 161 EPTNVAEAIA-SWGL-DYVV-ITSVDRDDLADQGSGHFAQTVRKLKELKPNM-LIEAL-VPDFRGNNGCVREVAKSG--L 233 (375)
Q Consensus 161 Ei~~~a~al~-~~G~-~eIv-LTsgdr~dl~d~G~~~~~~lir~Ik~~~p~i-~Ie~l-~pd~~g~~e~l~~L~~aG--l 233 (375)
++.+.++.+. .|+- +++. ++..... +.+ .+-+.+.-+..... +++ -+.+- -||-. .++.|+.|.+.. .
T Consensus 68 Q~~~q~~~~~kK~~~~kyiaYFQ~~TNT-yAp--vevLre~ye~aL~~-~~VVGLsIgTRPDCl-pd~VldlL~e~~~r~ 142 (312)
T COG1242 68 QFKEQAERMHKKWKRGKYIAYFQAYTNT-YAP--VEVLREMYEQALSE-AGVVGLSIGTRPDCL-PDDVLDLLAEYNKRY 142 (312)
T ss_pred HHHHHHHHHHHhhcCCcEEEEEeccccc-cCc--HHHHHHHHHHHhCc-CCeeEEeecCCCCCC-cHHHHHHHHHHhhhe
Confidence 4444555333 4543 4443 3444332 222 22222322222111 332 33322 24543 345555554432 2
Q ss_pred c-cccccccchH-HHHHHhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEec-CCCHHHHHHHHHHHHHcCCcEEeee
Q 017200 234 N-VFAHNIETVE-ELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGC-GETPDQVVSTMEKVRAAGVDVMTFG 310 (375)
Q Consensus 234 d-v~~hnlEtv~-rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~tkt~imvGl-GET~ee~~etl~~Lrelgvd~v~i~ 310 (375)
+ .+..+++|+. +..+.|+ |++++..+.+.++.+++ .||.+++|||+|| |||.+|+++|++.+.+++++-|.+-
T Consensus 143 ~vWvELGLQT~h~~Tlk~iN-RgHd~~~y~dav~r~rk---rgIkvc~HiI~GLPgE~~~~mleTak~v~~~~v~GIKlH 218 (312)
T COG1242 143 EVWVELGLQTAHDKTLKRIN-RGHDFACYVDAVKRLRK---RGIKVCTHLINGLPGETRDEMLETAKIVAELGVDGIKLH 218 (312)
T ss_pred EEEEEeccchhhHHHHHHHh-cccchHHHHHHHHHHHH---cCCeEEEEEeeCCCCCCHHHHHHHHHHHHhcCCceEEEE
Confidence 2 2455677765 9999999 99999999999999999 5899999999999 9999999999999999999988774
No 98
>COG0635 HemN Coproporphyrinogen III oxidase and related Fe-S oxidoreductases [Coenzyme metabolism]
Probab=99.29 E-value=1.2e-10 Score=119.13 Aligned_cols=170 Identities=16% Similarity=0.304 Sum_probs=128.6
Q ss_pred CccCCCCcCCCCCCCC--CCCCCC--cchHHHHHHHHHhc-----CCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCC
Q 017200 137 DTCTRGCRFCNVKTSR--APPPPD--PDEPTNVAEAIASW-----GLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKP 207 (375)
Q Consensus 137 d~C~~~C~FC~v~~~r--~~~~ld--~eEi~~~a~al~~~-----G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p 207 (375)
--|...|.||.+.+.- ...+.+ .+-+.++++..... -++.|.+-||+..-+. .+.+..++..|++.++
T Consensus 42 PFC~~~C~YC~fn~~~~~~~~~~~~Y~~aL~~Ei~~~~~~~~~~~~v~ti~~GGGTPslL~---~~~l~~ll~~l~~~~~ 118 (416)
T COG0635 42 PFCVSKCPYCDFNSHVTKRGQPVDEYLDALLEEIELVAALLGGQREVKTIYFGGGTPSLLS---PEQLERLLKALRELFN 118 (416)
T ss_pred ccccccCCCCCCeeeccCCCChHHHHHHHHHHHHHHHHhhcCCCCeEEEEEECCCccccCC---HHHHHHHHHHHHHhcc
Confidence 5899999999998632 111111 12223333333322 2567777777654444 4567777777776652
Q ss_pred ------CcEEEeecCCCCCChHHHHHHHHcCcccccccccchH-HHHHHhcCCCCCHHHHHHHHHHHHHhCCCCc-eEEE
Q 017200 208 ------NMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETVE-ELQSAVRDHRANFKQSLDVLMMAKDYVPAGT-LTKT 279 (375)
Q Consensus 208 ------~i~Ie~l~pd~~g~~e~l~~L~~aGldv~~hnlEtv~-rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl-~tkt 279 (375)
.+.||+-..++ +.+.++.++++|++++..++++.+ ++++.+. |.++.++..++++.+++. |+ .++.
T Consensus 119 ~~~~~~EitiE~nP~~~--~~e~~~~l~~~GvNRiSlGVQsf~~~~lk~lg-R~h~~~~~~~a~~~~~~~---g~~~in~ 192 (416)
T COG0635 119 DLDPDAEITIEANPGTV--EAEKFKALKEAGVNRISLGVQSFNDEVLKALG-RIHDEEEAKEAVELARKA---GFTSINI 192 (416)
T ss_pred cCCCCceEEEEeCCCCC--CHHHHHHHHHcCCCEEEeccccCCHHHHHHhc-CCCCHHHHHHHHHHHHHc---CCCcEEE
Confidence 35666533345 789999999999999999999765 9999999 999999999999999994 44 6899
Q ss_pred eEEEec-CCCHHHHHHHHHHHHHcCCcEEeeecCC-CC
Q 017200 280 SIMLGC-GETPDQVVSTMEKVRAAGVDVMTFGQYM-RP 315 (375)
Q Consensus 280 ~imvGl-GET~ee~~etl~~Lrelgvd~v~i~qYl-~P 315 (375)
++|+|+ |+|.+++.++++.+.++++|.|++.+|. -|
T Consensus 193 DLIyglP~QT~~~~~~~l~~a~~l~pdhis~y~L~~~p 230 (416)
T COG0635 193 DLIYGLPGQTLESLKEDLEQALELGPDHLSLYSLAIEP 230 (416)
T ss_pred EeecCCCCCCHHHHHHHHHHHHhCCCCEEEEeeeecCC
Confidence 999999 9999999999999999999999999884 45
No 99
>COG1856 Uncharacterized homolog of biotin synthetase [Function unknown]
Probab=99.27 E-value=2.3e-10 Score=106.47 Aligned_cols=203 Identities=14% Similarity=0.157 Sum_probs=149.7
Q ss_pred cEEEEeeeCCccCCCCcCCCCCCCCCCCCCCcchHHHHHHHHHhcCCcEEEEEeee--CCCCCcccHHHHHHHHHHHHHh
Q 017200 128 ATATIMILGDTCTRGCRFCNVKTSRAPPPPDPDEPTNVAEAIASWGLDYVVITSVD--RDDLADQGSGHFAQTVRKLKEL 205 (375)
Q Consensus 128 ~tatfm~i~d~C~~~C~FC~v~~~r~~~~ld~eEi~~~a~al~~~G~~eIvLTsgd--r~dl~d~G~~~~~~lir~Ik~~ 205 (375)
++..+-+.|+.|..+|..|+-....+..+.+.++++....++.+.|..-+.|+||- +.+.| .+.|-+.++++|+.
T Consensus 10 k~~sISVTG~yC~lnC~HCg~~~L~~Mi~vt~~~l~k~~~el~kkGy~g~llSGGm~srg~VP---l~kf~d~lK~lke~ 86 (275)
T COG1856 10 KFISISVTGAYCSLNCPHCGRHYLEHMIKVTTKSLLKRCMELEKKGYEGCLLSGGMDSRGKVP---LWKFKDELKALKER 86 (275)
T ss_pred CCceEEEeccceEecChHHHHHHHHHhcccchHHHHHHHHHHHhcCceeEEEeCCcCCCCCcc---HHHHHHHHHHHHHh
Confidence 36667778999999999998776554555666899999999999999999999995 34445 78899999999987
Q ss_pred CCCcEEEeecCCCCCChHHHHHHHHcCcccccccccchHHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEec
Q 017200 206 KPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGC 285 (375)
Q Consensus 206 ~p~i~Ie~l~pd~~g~~e~l~~L~~aGldv~~hnlEtv~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~tkt~imvGl 285 (375)
. ++.+.+=++-. +++.++.|+.+++|++..-+=..+++.++|-.-..+.+++++.++.+++ .|+.+--||++|+
T Consensus 87 ~-~l~inaHvGfv--dE~~~eklk~~~vdvvsLDfvgDn~vIk~vy~l~ksv~dyl~~l~~L~e---~~irvvpHitiGL 160 (275)
T COG1856 87 T-GLLINAHVGFV--DESDLEKLKEELVDVVSLDFVGDNDVIKRVYKLPKSVEDYLRSLLLLKE---NGIRVVPHITIGL 160 (275)
T ss_pred h-CeEEEEEeeec--cHHHHHHHHHhcCcEEEEeecCChHHHHHHHcCCccHHHHHHHHHHHHH---cCceeceeEEEEe
Confidence 5 45555544433 6788999999999987654322234444443235678999999999999 5899999999999
Q ss_pred -CCCHHHHHHHHHHHHHcCCcEEeeecCCCCCC-CCCCccccCCHHHHHHHHHHHHH
Q 017200 286 -GETPDQVVSTMEKVRAAGVDVMTFGQYMRPSK-RHMPVSEYITPEAFERYRALGME 340 (375)
Q Consensus 286 -GET~ee~~etl~~Lrelgvd~v~i~qYl~P~~-~~~~v~~~v~pe~~~~l~~~a~~ 340 (375)
+--.+.=.+.++.|.+..+|.+-+.-++ |+. ..+.....+++++....-..|++
T Consensus 161 ~~gki~~e~kaIdiL~~~~~DalVl~vli-PtpGtkm~~~~pp~~eE~i~v~~~AR~ 216 (275)
T COG1856 161 DFGKIHGEFKAIDILVNYEPDALVLVVLI-PTPGTKMGNSPPPPVEEAIKVVKYARK 216 (275)
T ss_pred ccCcccchHHHHHHHhcCCCCeEEEEEEe-cCCchhccCCCCcCHHHHHHHHHHHHH
Confidence 4455555688999999999976664444 522 22333444566777777777766
No 100
>TIGR02495 NrdG2 anaerobic ribonucleoside-triphosphate reductase activating protein. This enzyme is a member of the radical-SAM family (pfam04055). It is often gene clustered with the class III (anaerobic) ribonucleotide triphosphate reductase (NrdD, TIGR02487) and presumably fulfills the identical function as NrdG which utilizes S-adenosyl methionine, an iron-sulfur cluster and a reductant (dihydroflavodoxin) to produce a glycine-centered radical in NrdD.
Probab=99.27 E-value=5.3e-10 Score=101.64 Aligned_cols=163 Identities=15% Similarity=0.171 Sum_probs=115.8
Q ss_pred EEEEeeeCCccCCCCcCCCCCCCC---CCCCCCcchHHHHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHh
Q 017200 129 TATIMILGDTCTRGCRFCNVKTSR---APPPPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKEL 205 (375)
Q Consensus 129 tatfm~i~d~C~~~C~FC~v~~~r---~~~~ld~eEi~~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~ 205 (375)
..++++.+++|+.+|+||..+... ....++++++.+.++.. ...++.|.|+||+.--.+ ++.++++.+++.
T Consensus 16 ~~~~~~~t~~Cnl~C~~C~~~~~~~~~~~~~~~~~~i~~~i~~~-~~~~~~i~~sGGEPll~~-----~l~~li~~~~~~ 89 (191)
T TIGR02495 16 KLAFTIFFQGCNLKCPYCHNPELIDREGSGEIEVEFLLEFLRSR-QGLIDGVVITGGEPTLQA-----GLPDFLRKVREL 89 (191)
T ss_pred CeEEEEEcCCCCCCCCCCCCccccCCCCCCcCCHHHHHHHHHHh-cCCCCeEEEECCcccCcH-----hHHHHHHHHHHC
Confidence 557777799999999999987431 11248888888887764 234789999998742212 277888888774
Q ss_pred CCCcEEEeecCCCCCChHHHHHHHHcC-cccccccccchHHHHHHhcCCCCCHH-HHHHHHHHHHHhCCCCceEEEeEEE
Q 017200 206 KPNMLIEALVPDFRGNNGCVREVAKSG-LNVFAHNIETVEELQSAVRDHRANFK-QSLDVLMMAKDYVPAGTLTKTSIML 283 (375)
Q Consensus 206 ~p~i~Ie~l~pd~~g~~e~l~~L~~aG-ldv~~hnlEtv~rl~~~mr~r~~s~~-~~l~vl~~ak~~~p~Gl~tkt~imv 283 (375)
++.+.+.+-.. ..+.++.++++| ++.+...++..++.+..+..++.+++ ..++.++.+++.... +.+.+.++=
T Consensus 90 --g~~v~i~TNg~--~~~~l~~l~~~g~~~~v~isl~~~~~~~~~~~g~~~~~~~~~~~~i~~l~~~gi~-~~i~~~v~~ 164 (191)
T TIGR02495 90 --GFEVKLDTNGS--NPRVLEELLEEGLVDYVAMDVKAPPEKYPELYGLEKNGSNNILKSLEILLRSGIP-FELRTTVHR 164 (191)
T ss_pred --CCeEEEEeCCC--CHHHHHHHHhcCCCcEEEEeccCChHHHHHHHCCCCchHHHHHHHHHHHHHcCCC-EEEEEEEeC
Confidence 46665555333 567889999998 58888878876666766653455665 889999999984222 345555555
Q ss_pred ecCCCHHHHHHHHHHHHHcC
Q 017200 284 GCGETPDQVVSTMEKVRAAG 303 (375)
Q Consensus 284 GlGET~ee~~etl~~Lrelg 303 (375)
|.-. ++|+.+.++++++.+
T Consensus 165 ~~~~-~~ei~~~~~~l~~~~ 183 (191)
T TIGR02495 165 GFLD-EEDLAEIATRIKENG 183 (191)
T ss_pred CCCC-HHHHHHHHHHhccCC
Confidence 6643 779999999999888
No 101
>TIGR03470 HpnH hopanoid biosynthesis associated radical SAM protein HpnH. The sequences represented by this model are members of the radical SAM superfamily of enzymes (pfam04055). These enzymes utilize an iron-sulfur redox cluster and S-adenosylmethionine to carry out diverse radical mediated reactions. The members of this clade are frequently found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. The linkage between SHC and this radical SAM enzyme is strong; one is nearly always observed in the same genome where the other is found. A hopanoid biosynthesis locus was described in Zymomonas mobilis consisting of the genes HpnA-E and SHC (HpnF). Continuing past SHC are found a phosphorylase enzyme (ZMO0873, i.e. HpnG, TIGR03468) and this radical SAM enzyme (ZMO0874) which we name here HpnH. Granted, in Z. mobilis, HpnH is in a convergent orientation with respect to HpnA-G, but one gene beyond HpnH
Probab=99.24 E-value=1.4e-09 Score=107.40 Aligned_cols=170 Identities=16% Similarity=0.151 Sum_probs=122.5
Q ss_pred EEEeeeCCccCCCCcCCCCCCCCCC---CCCCcchHHHHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhC
Q 017200 130 ATIMILGDTCTRGCRFCNVKTSRAP---PPPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELK 206 (375)
Q Consensus 130 atfm~i~d~C~~~C~FC~v~~~r~~---~~ld~eEi~~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~ 206 (375)
.-.+.+++.|+.+|.||.......+ ..++++++.+.+ .+.|+..|.|+||+---.+| +.++++.+++.
T Consensus 29 ~l~le~T~~CNL~C~~C~~~~~~~~~~~~~ls~ee~~~~i---~e~g~~~V~i~GGEPLL~pd-----l~eiv~~~~~~- 99 (318)
T TIGR03470 29 VLMLEPLFRCNLACAGCGKIQYPAEILKQRLSVEECLRAV---DECGAPVVSIPGGEPLLHPE-----IDEIVRGLVAR- 99 (318)
T ss_pred EEEEecccccCcCCcCCCCCcCCCcccccCCCHHHHHHHH---HHcCCCEEEEeCcccccccc-----HHHHHHHHHHc-
Confidence 3345679999999999986542211 137777776654 45799999999996322233 66788888765
Q ss_pred CCcEEEeecCCCCCChHHHHHHHHcCcccccccccchHHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecC
Q 017200 207 PNMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCG 286 (375)
Q Consensus 207 p~i~Ie~l~pd~~g~~e~l~~L~~aGldv~~hnlEtv~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~tkt~imvGlG 286 (375)
+..+.+.+-... -.+.+..++++|.+.+...+++.++.+.+++.++.+|+..++.++.+++ .|+.+...+.+=-+
T Consensus 100 -g~~v~l~TNG~l-l~~~~~~l~~~~~~~i~VSLDG~~e~hd~~~~~~g~f~~~l~~I~~l~~---~G~~v~v~~tv~~~ 174 (318)
T TIGR03470 100 -KKFVYLCTNALL-LEKKLDKFEPSPYLTFSVHLDGLREHHDASVCREGVFDRAVEAIREAKA---RGFRVTTNTTLFND 174 (318)
T ss_pred -CCeEEEecCcee-hHHHHHHHHhCCCcEEEEEEecCchhhchhhcCCCcHHHHHHHHHHHHH---CCCcEEEEEEEeCC
Confidence 345554443221 2456788999998888888887777776665567899999999999998 46666555544237
Q ss_pred CCHHHHHHHHHHHHHcCCcEEeeecCC
Q 017200 287 ETPDQVVSTMEKVRAAGVDVMTFGQYM 313 (375)
Q Consensus 287 ET~ee~~etl~~Lrelgvd~v~i~qYl 313 (375)
++.+++.+.++.++++|++.+.+.+.+
T Consensus 175 ~n~~ei~~~~~~~~~lGv~~i~i~p~~ 201 (318)
T TIGR03470 175 TDPEEVAEFFDYLTDLGVDGMTISPGY 201 (318)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEecCc
Confidence 999999999999999999988885443
No 102
>TIGR02493 PFLA pyruvate formate-lyase 1-activating enzyme. An iron-sulfur protein with a radical-SAM domain (pfam04055). A single glycine residue in EC 2.3.1.54, formate C-acetyltransferase (formate-pyruvate lyase), is oxidized to the corresponding radical by transfer of H from its CH2 to AdoMet with concomitant cleavage of the latter. The reaction requires Fe2+. The first stage is reduction of the AdoMet to give methionine and the 5'-deoxyadenosin-5-yl radical, which then abstracts a hydrogen radical from the glycine residue.
Probab=99.24 E-value=1.1e-09 Score=102.59 Aligned_cols=198 Identities=14% Similarity=0.163 Sum_probs=131.8
Q ss_pred EEEeeeCCccCCCCcCCCCCCCCC---CCCCCcchHHHHHHHHHhcC---CcEEEEEeeeCCCCCcccHHHHHHHHHHHH
Q 017200 130 ATIMILGDTCTRGCRFCNVKTSRA---PPPPDPDEPTNVAEAIASWG---LDYVVITSVDRDDLADQGSGHFAQTVRKLK 203 (375)
Q Consensus 130 atfm~i~d~C~~~C~FC~v~~~r~---~~~ld~eEi~~~a~al~~~G---~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik 203 (375)
..+++.+.+|+.+|.||....... ...++++++++.++.+...+ .+.|.+|||+-- + . .+.+.++++.++
T Consensus 16 ~~~~v~~~gCnl~C~~C~~~~~~~~~~~~~~s~e~i~~~i~~~~~~~~~~~~~I~~~GGEPl-l-~--~~~~~~li~~~~ 91 (235)
T TIGR02493 16 IRFVVFMQGCPLRCQYCHNPDTWDLKGGTEVTPEELIKEVGSYKDFFKASGGGVTFSGGEPL-L-Q--PEFLSELFKACK 91 (235)
T ss_pred ceEEEEECCCCCcCCCCCChhhccCCCCEECCHHHHHHHHHHhHHHHhcCCCeEEEeCcccc-c-C--HHHHHHHHHHHH
Confidence 355578899999999998653211 12488999988888776543 258999997632 2 1 344568889888
Q ss_pred HhCCCcEEEeecCCCC-CChHHHHHHHHcCcccccccccch-HHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeE
Q 017200 204 ELKPNMLIEALVPDFR-GNNGCVREVAKSGLNVFAHNIETV-EELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSI 281 (375)
Q Consensus 204 ~~~p~i~Ie~l~pd~~-g~~e~l~~L~~aGldv~~hnlEtv-~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~tkt~i 281 (375)
+. ++.+.+.+..+. ...+.++.+.+ .+|.+...+++. ++.+.+++ +. ++++.++.++.+++. |+.+...+
T Consensus 92 ~~--g~~~~i~TNG~~~~~~~~~~~ll~-~~d~v~isl~~~~~~~~~~~~-g~-~~~~v~~~i~~l~~~---g~~~~v~~ 163 (235)
T TIGR02493 92 EL--GIHTCLDTSGFLGGCTEAADELLE-YTDLVLLDIKHFNPEKYKKLT-GV-SLQPTLDFAKYLAKR---NKPIWIRY 163 (235)
T ss_pred HC--CCCEEEEcCCCCCccHHHHHHHHH-hCCEEEEeCCCCCHHHHHHHH-CC-CcHHHHHHHHHHHhC---CCcEEEEE
Confidence 74 455555554332 12566777766 467777788875 58888887 33 889999999999984 55554444
Q ss_pred EE--ecCCCHHHHHHHHHHHHHcC-CcEEeeecCCCCCCC--------C--CCccccCCHHHHHHHHHHHHH
Q 017200 282 ML--GCGETPDQVVSTMEKVRAAG-VDVMTFGQYMRPSKR--------H--MPVSEYITPEAFERYRALGME 340 (375)
Q Consensus 282 mv--GlGET~ee~~etl~~Lrelg-vd~v~i~qYl~P~~~--------~--~~v~~~v~pe~~~~l~~~a~~ 340 (375)
++ |..++.+|+.+..+++++++ +..+.+.+| +|... . +.-...++.++.+++++++++
T Consensus 164 vv~~~~~~n~~ei~~l~~~~~~l~~~~~~~~~p~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (235)
T TIGR02493 164 VLVPGYTDSEEDIEALAEFVKTLPNVERVEVLPY-HQLGVYKWEALGIEYPLEGVKPPNKEQLERAAEIFKE 234 (235)
T ss_pred eeeCCcCCCHHHHHHHHHHHHhCCCCceEEecCC-CcccHHHHHHcCCcCccCCCCCCCHHHHHHHHHHHhh
Confidence 44 44568899999999999999 577777544 34211 1 111122456677777777654
No 103
>TIGR01211 ELP3 histone acetyltransferase, ELP3 family. The Saccharomyces cerevisiae member YPL086C has been characterized in vitro as an N-terminal acetyltransferase for all four core histones. It is a component of the RNA polymerase II holoenzyme, designated Elp3p for Elongator Protein 3. Members of this family are found in eukaryotes and archaea. These proteins are part of the larger set of GNAT acetyltransferases.
Probab=99.22 E-value=6.8e-10 Score=116.28 Aligned_cols=176 Identities=15% Similarity=0.235 Sum_probs=132.1
Q ss_pred cEEEEeeeCCccC-CCCcCCCC-------CCC---CCCCC--------CCcchHHHHHHHHHhcCC--c--EEEEEeeeC
Q 017200 128 ATATIMILGDTCT-RGCRFCNV-------KTS---RAPPP--------PDPDEPTNVAEAIASWGL--D--YVVITSVDR 184 (375)
Q Consensus 128 ~tatfm~i~d~C~-~~C~FC~v-------~~~---r~~~~--------ld~eEi~~~a~al~~~G~--~--eIvLTsgdr 184 (375)
++++.|-----|+ ..|.||-- +.+ ..|.. -+..++...++++...|- + |+.|-||+-
T Consensus 67 ~~v~vm~~p~~cph~~c~~cp~~~~~~~~~~sy~~~ep~~~ra~~~~~dpy~q~~~rl~~l~~~g~~~~kvE~i~~GGTf 146 (522)
T TIGR01211 67 AVVAVMTSPHRCPHGKCLYCPGGPDSENSPQSYTGYEPAAMRGRQNDYDPYEQVTARLEQLEQIGHPVDKVELIIMGGTF 146 (522)
T ss_pred EEEEEecCCccCCCCceEeCCCCCCcCCCCcccCCCCcHhHHHHHcCCCcHHHHHHHHHHHHHhCCCCceEEEEEECCCc
Confidence 4555553346799 57999974 111 12221 244677778889988873 3 558899987
Q ss_pred CCCCcccHHHHHHHHHHHHHhCCC---------------------------cEEEeecCCCCCChHHHHHHHHcCccccc
Q 017200 185 DDLADQGSGHFAQTVRKLKELKPN---------------------------MLIEALVPDFRGNNGCVREVAKSGLNVFA 237 (375)
Q Consensus 185 ~dl~d~G~~~~~~lir~Ik~~~p~---------------------------i~Ie~l~pd~~g~~e~l~~L~~aGldv~~ 237 (375)
..++ .++...+|+.+.+..++ +.|+ .-||.. +.+.|+.|+++|++.+.
T Consensus 147 t~l~---~~y~~~fl~~~~~a~~~~~~~~~~~~~~~~~~~~ne~a~~~~vgitiE-tRPD~i-~~e~L~~L~~~G~~rVs 221 (522)
T TIGR01211 147 PARD---LDYQEWFIKRCLNAMNGFDQELKGNSTLEEAIRINETSKHRCVGLTIE-TRPDYC-REEHIDRMLKLGATRVE 221 (522)
T ss_pred ccCC---HHHHHHHHHHHHHHhccccccccccchHHHHHHhhhcccCCeEEEEEE-EcCCcC-CHHHHHHHHHcCCCEEE
Confidence 7776 34444455544443322 2222 256765 78999999999999999
Q ss_pred ccccch-HHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEec-CCCHHHHHHHHHHHHH---cCCcEEeeecC
Q 017200 238 HNIETV-EELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGC-GETPDQVVSTMEKVRA---AGVDVMTFGQY 312 (375)
Q Consensus 238 hnlEtv-~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~tkt~imvGl-GET~ee~~etl~~Lre---lgvd~v~i~qY 312 (375)
.++|+. +++++.|+ |+++.++..+.++.+++ .|+.+..++|+|| |||.++..++++.+-+ +++|.+.+.+.
T Consensus 222 lGVQS~~d~VL~~in-Rght~~~v~~Ai~~lr~---~G~~v~~~LM~GLPgqt~e~~~~t~~~l~~~~~l~pD~Ikiypl 297 (522)
T TIGR01211 222 LGVQTIYNDILERTK-RGHTVRDVVEATRLLRD---AGLKVVYHIMPGLPGSSFERDLEMFREIFEDPRFKPDMLKIYPT 297 (522)
T ss_pred EECccCCHHHHHHhC-CCCCHHHHHHHHHHHHH---cCCeEEEEeecCCCCCCHHHHHHHHHHHHhccCCCcCEEEEecc
Confidence 999976 59999999 89999999999999999 5899999999999 9999999999999985 89999999753
No 104
>COG2516 Biotin synthase-related enzyme [General function prediction only]
Probab=99.19 E-value=5.1e-10 Score=108.92 Aligned_cols=202 Identities=18% Similarity=0.313 Sum_probs=131.1
Q ss_pred EEEEeeeC--CccCCCCcCCCCCCCC--CCCC-----CCcch--HHHHHHHHHh-cC-CcEEEEEeeeCCCCCcccHHHH
Q 017200 129 TATIMILG--DTCTRGCRFCNVKTSR--APPP-----PDPDE--PTNVAEAIAS-WG-LDYVVITSVDRDDLADQGSGHF 195 (375)
Q Consensus 129 tatfm~i~--d~C~~~C~FC~v~~~r--~~~~-----ld~eE--i~~~a~al~~-~G-~~eIvLTsgdr~dl~d~G~~~~ 195 (375)
+..|+..+ .+|..+|+||.+.++. +|+. .++.. +....+.+.. .| .+.|+++-.+.+... ...
T Consensus 29 ~ta~l~t~~~~~c~~~ca~c~~ar~s~a~p~~~~lsRv~w~~v~l~~~~~~~~~~~g~~~rici~~i~~p~~~----~d~ 104 (339)
T COG2516 29 TTAYLMTTYPGGCIADCAYCPQARSSTANPPKKVLSRVEWPAVALEEVLKRLFYDLGNFKRICIQQIAYPRAL----NDL 104 (339)
T ss_pred ceeeeeeecCCceeechhhChhhhhcccCCCcceeeecccccchHHHHHhHhhhhhcccccccceeecccccc----chh
Confidence 44444444 8999999999998743 2221 11111 1112222222 23 588888877654332 124
Q ss_pred HHHHHHHHHhC-CCcEEE-eecCCCCCChHHHHHHHHcCcccccccccchH-HHHHHhc-CC--CCCHHHHHHHHHHHHH
Q 017200 196 AQTVRKLKELK-PNMLIE-ALVPDFRGNNGCVREVAKSGLNVFAHNIETVE-ELQSAVR-DH--RANFKQSLDVLMMAKD 269 (375)
Q Consensus 196 ~~lir~Ik~~~-p~i~Ie-~l~pd~~g~~e~l~~L~~aGldv~~hnlEtv~-rl~~~mr-~r--~~s~~~~l~vl~~ak~ 269 (375)
..+++.+.-.. -.+.|+ ++++-- ..+.+...+..|.|.+...+|.+. ++|++++ +- .++|++.++.|+++.+
T Consensus 105 ~~i~~~~~~~~~~~itiseci~~~~--~~~~l~e~~klg~d~l~V~~daa~~~~~e~v~~~s~s~~S~e~~~~~l~~~~~ 182 (339)
T COG2516 105 KLILERLHIRLGDPITISECITAVS--LKEELEEYRKLGADYLGVAEDAANEELFEKVRKTSGSPHSWERYWEFLEKVAE 182 (339)
T ss_pred hhhhhhhhhccCCceehhhhhhccc--chHHHHHHHhcchhhhhHHHHhcCHHHHHHHHhccCCCCcHHHHHHHHHHHHH
Confidence 55666665221 123333 233321 267889999999999999988765 9999884 22 3789999999999999
Q ss_pred hCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcCCcEEeeecCCCCCCCCCCccccCCHHHHHHHHHHHHHh
Q 017200 270 YVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQYMRPSKRHMPVSEYITPEAFERYRALGMEM 341 (375)
Q Consensus 270 ~~p~Gl~tkt~imvGlGET~ee~~etl~~Lrelgvd~v~i~qYl~P~~~~~~v~~~v~pe~~~~l~~~a~~~ 341 (375)
.++.| .+..+++||+||||+++++++...++.+--+--+ .| -| -+++++.+...+ -.++++++....
T Consensus 183 ~~~k~-rv~ihliVglGesD~~~ve~~~~v~~~g~~v~Lf-af-~P-~~gt~me~r~~~-pve~Yrk~q~a~ 249 (339)
T COG2516 183 AFGKG-RVGIHLIVGLGESDKDIVETIKRVRKRGGIVSLF-AF-TP-LKGTQMENRKPP-PVERYRKIQVAR 249 (339)
T ss_pred HhccC-CcceeEEeccCCchHHHHHHHHHHHhcCceEEEE-Ee-cc-cccccccCCCCC-cHHHHHHHHHHH
Confidence 99875 7999999999999999999999999998654333 33 36 456666654332 355555554443
No 105
>PRK11145 pflA pyruvate formate lyase-activating enzyme 1; Provisional
Probab=99.18 E-value=2.1e-09 Score=101.77 Aligned_cols=205 Identities=11% Similarity=0.166 Sum_probs=135.2
Q ss_pred EeeeCCccCCCCcCCCCCCCC---CCCCCCcchHHHHHHHHHhc---CCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHh
Q 017200 132 IMILGDTCTRGCRFCNVKTSR---APPPPDPDEPTNVAEAIASW---GLDYVVITSVDRDDLADQGSGHFAQTVRKLKEL 205 (375)
Q Consensus 132 fm~i~d~C~~~C~FC~v~~~r---~~~~ld~eEi~~~a~al~~~---G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~ 205 (375)
+++...+|+.+|.||.-+... ....++++|+++.++..... ..+.|++|||+-- + . .+.+.++++.+++.
T Consensus 23 ~~~f~~gCnl~C~~C~~~~~~~~~~~~~lt~eei~~~i~~~~~~~~~~~~~V~~sGGEPl-l-~--~~~~~~l~~~~k~~ 98 (246)
T PRK11145 23 FITFFQGCLMRCLYCHNRDTWDTHGGKEVTVEELMKEVVTYRHFMNASGGGVTASGGEAI-L-Q--AEFVRDWFRACKKE 98 (246)
T ss_pred EEEEECCCCCcCCCCCCHHHCCCCCCeEcCHHHHHHHHHHhHHHHhcCCCeEEEeCccHh-c-C--HHHHHHHHHHHHHc
Confidence 446678999999999965421 11248899998887765443 3468999998632 2 1 34456888999874
Q ss_pred CCCcEEEeecCCCC-CChHHHHHHHHcCcccccccccch-HHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEE
Q 017200 206 KPNMLIEALVPDFR-GNNGCVREVAKSGLNVFAHNIETV-EELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIML 283 (375)
Q Consensus 206 ~p~i~Ie~l~pd~~-g~~e~l~~L~~aGldv~~hnlEtv-~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~tkt~imv 283 (375)
++.+.+.+-.+. ...+.++.+.+ .+|.+...+++. ++.++.+++ .+.+..++.++.+++.... +.+.+-+|=
T Consensus 99 --g~~i~l~TNG~~~~~~~~~~~ll~-~~d~v~islk~~~~e~~~~~~g--~~~~~~l~~i~~l~~~g~~-v~i~~~li~ 172 (246)
T PRK11145 99 --GIHTCLDTNGFVRRYDPVIDELLD-VTDLVMLDLKQMNDEIHQNLVG--VSNHRTLEFARYLAKRNQK-TWIRYVVVP 172 (246)
T ss_pred --CCCEEEECCCCCCcchHHHHHHHH-hCCEEEECCCcCChhhcccccC--CChHHHHHHHHHHHhCCCc-EEEEEEEEC
Confidence 455554443332 12467777765 368777788876 478888873 3557778888888874322 455666666
Q ss_pred ecCCCHHHHHHHHHHHHHcC-CcEEeeecCCCCCC-------CCCCcc--ccCCHHHHHHHHHHHHHhhhhhh
Q 017200 284 GCGETPDQVVSTMEKVRAAG-VDVMTFGQYMRPSK-------RHMPVS--EYITPEAFERYRALGMEMGFRYV 346 (375)
Q Consensus 284 GlGET~ee~~etl~~Lrelg-vd~v~i~qYl~P~~-------~~~~v~--~~v~pe~~~~l~~~a~~~gf~~~ 346 (375)
|+.++++|+.+..+++++++ +..+.+-+|-++.. ...++. +..++++.+.+.+++.+.|+.++
T Consensus 173 g~nd~~~ei~~l~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~~~~~~g~~~~ 245 (246)
T PRK11145 173 GWTDDDDSAHRLGEFIKDMGNIEKIELLPYHELGKHKWEAMGEEYKLDGVKPPSKETMERVKGILEQYGHKVM 245 (246)
T ss_pred CCCCCHHHHHHHHHHHHhcCCcceEEEecCCccchhHHHHcCCcccccCCCCCCHHHHHHHHHHHHHcCCccc
Confidence 77778889999999999886 55666655532211 011221 33567888888888888887664
No 106
>TIGR03822 AblA_like_2 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in Rhodopseudomonas, Caulobacter crescentus, Bradyrhizobium, etc.
Probab=99.14 E-value=5.1e-09 Score=103.69 Aligned_cols=190 Identities=15% Similarity=0.190 Sum_probs=129.3
Q ss_pred ChhhhhhhcCCCCcccccCCCCCCccEEEEeeeCCccCCCCcCCCCCCCCCC---CCCCcchHHHHHHHHHh-cCCcEEE
Q 017200 103 KLHTVCEEAKCPNLGECWSGGETGTATATIMILGDTCTRGCRFCNVKTSRAP---PPPDPDEPTNVAEAIAS-WGLDYVV 178 (375)
Q Consensus 103 ~L~tvceeA~cpn~~ec~~~~~~~~~tatfm~i~d~C~~~C~FC~v~~~r~~---~~ld~eEi~~~a~al~~-~G~~eIv 178 (375)
...-++|+...|--|-. |-+.....+.++++|+.+|+||..+...++ ..++.+++.+.++.+++ .|+.+|+
T Consensus 67 ~~dp~~e~~~~~~~gl~-----hkyp~rvll~vT~~C~~~Cr~C~r~~~~~~~~~~~l~~~e~~~~i~~i~~~~~I~~Vi 141 (321)
T TIGR03822 67 RADPIGDDAHSPVPGIV-----HRYPDRVLLKPVHVCPVYCRFCFRREMVGPEGLGVLSPAELDAAFAYIADHPEIWEVI 141 (321)
T ss_pred CCCCcccccCCCCCCcc-----cCCCCEEEEEecCCCCCcCcCCCchhhcCCcccCcCCHHHHHHHHHHHHhCCCccEEE
Confidence 45667776655544321 112234455679999999999997653221 23677889888888875 4999999
Q ss_pred EEeeeCCCCCcccHHHHHHHHHHHHHhCCCc---EEEee----cCCCCCChHHHHHHHHcCcccccccccchHHHHHHhc
Q 017200 179 ITSVDRDDLADQGSGHFAQTVRKLKELKPNM---LIEAL----VPDFRGNNGCVREVAKSGLNVFAHNIETVEELQSAVR 251 (375)
Q Consensus 179 LTsgdr~dl~d~G~~~~~~lir~Ik~~~p~i---~Ie~l----~pd~~g~~e~l~~L~~aGldv~~hnlEtv~rl~~~mr 251 (375)
|||||---+. ...+.++++.+++. |.+ ++..- .|... +.+.++.|+++|.. +..++++..
T Consensus 142 lSGGDPl~~~---~~~L~~ll~~l~~i-~~v~~iri~Tr~~v~~p~ri-t~ell~~L~~~g~~-v~i~l~~~h------- 208 (321)
T TIGR03822 142 LTGGDPLVLS---PRRLGDIMARLAAI-DHVKIVRFHTRVPVADPARV-TPALIAALKTSGKT-VYVALHANH------- 208 (321)
T ss_pred EeCCCcccCC---HHHHHHHHHHHHhC-CCccEEEEeCCCcccChhhc-CHHHHHHHHHcCCc-EEEEecCCC-------
Confidence 9999854443 24578888888763 443 34321 23322 68899999999954 445555531
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCCceEEEeEEE--ecCCCHHHHHHHHHHHHHcCCcEEeeecCCCC
Q 017200 252 DHRANFKQSLDVLMMAKDYVPAGTLTKTSIML--GCGETPDQVVSTMEKVRAAGVDVMTFGQYMRP 315 (375)
Q Consensus 252 ~r~~s~~~~l~vl~~ak~~~p~Gl~tkt~imv--GlGET~ee~~etl~~Lrelgvd~v~i~qYl~P 315 (375)
++.. .++.++.++.+++ .|+.+.....+ |..++.+++.++++.+.++|+....+.++ .|
T Consensus 209 ~~el-~~~~~~ai~~L~~---~Gi~v~~q~vLl~gvNd~~~~l~~l~~~l~~~gv~pyyl~~~-~p 269 (321)
T TIGR03822 209 AREL-TAEARAACARLID---AGIPMVSQSVLLRGVNDDPETLAALMRAFVECRIKPYYLHHL-DL 269 (321)
T ss_pred hhhc-CHHHHHHHHHHHH---cCCEEEEEeeEeCCCCCCHHHHHHHHHHHHhcCCeeEEEEec-CC
Confidence 0111 3778888999988 57776554333 88999999999999999999988777544 45
No 107
>PRK14456 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=99.11 E-value=1e-08 Score=103.39 Aligned_cols=201 Identities=13% Similarity=0.141 Sum_probs=135.9
Q ss_pred eCCccCCCCcCCCCCCCCCCCCCCcchHHHHHHHH--------HhcCCcEEEEEe-eeCCCCCcccHHHHHHHHHHHHHh
Q 017200 135 LGDTCTRGCRFCNVKTSRAPPPPDPDEPTNVAEAI--------ASWGLDYVVITS-VDRDDLADQGSGHFAQTVRKLKEL 205 (375)
Q Consensus 135 i~d~C~~~C~FC~v~~~r~~~~ld~eEi~~~a~al--------~~~G~~eIvLTs-gdr~dl~d~G~~~~~~lir~Ik~~ 205 (375)
.+.+|+.+|.||.-....-...++.+|+++.+..+ ...|++.|+++| |+.-.. .+.+.+.|+.+++.
T Consensus 127 sq~GCnl~C~FC~tg~~g~~rnLt~~EI~~qv~~~~~~~~~~~~~~~v~nIvfmGmGEPLln----~d~v~~~i~~l~~~ 202 (368)
T PRK14456 127 SQAGCALRCSFCATGQMGFRRNLTAGEITGQVFALSDMLAERNRERGITNIVFMGMGEPLLN----TDNVFEAVLTLSTR 202 (368)
T ss_pred ecCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhhhccCCccEEEEeCcCccccC----HHHHHHHHHHHhcc
Confidence 48999999999987653222248899999886443 246799999999 753221 33577888877653
Q ss_pred -CC-C---cEEEeecCCCCCChHHHHHHHHcCcc-cccccccch-HHHHHHhcC---CCCCHHHHHHHHHHHHHhCCCCc
Q 017200 206 -KP-N---MLIEALVPDFRGNNGCVREVAKSGLN-VFAHNIETV-EELQSAVRD---HRANFKQSLDVLMMAKDYVPAGT 275 (375)
Q Consensus 206 -~p-~---i~Ie~l~pd~~g~~e~l~~L~~aGld-v~~hnlEtv-~rl~~~mr~---r~~s~~~~l~vl~~ak~~~p~Gl 275 (375)
.. + -+|.+.+-. -.+.++.|.++|++ .++..+++. ++.+.++.| +++++++.++.++...+..+.-+
T Consensus 203 ~~~~~is~r~ItisT~G---l~~~i~~L~~~gl~~~LaiSL~a~~~e~r~~i~P~~~~~~~l~~l~~~i~~~~~~~g~~V 279 (368)
T PRK14456 203 KYRFSISQRKITISTVG---ITPEIDRLATSGLKTKLAVSLHSADQEKRERLMPQAARDYPLDELREALIGYASKTGEPV 279 (368)
T ss_pred ccccCcCcCeeEEECCC---ChHHHHHHHHcCCCceEEEEecCCCHHHHHHhccccCCCCCHHHHHHHHHHHHHhcCCeE
Confidence 11 1 134444422 34568999999997 688888876 489988853 46799999999985433322214
Q ss_pred eEEEeEEEecCCCHHHHHHHHHHHHHcCCcEEeeecCCCCCCCCCCccccCCHHHHHHHHHHHHHhhhhhh
Q 017200 276 LTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQYMRPSKRHMPVSEYITPEAFERYRALGMEMGFRYV 346 (375)
Q Consensus 276 ~tkt~imvGlGET~ee~~etl~~Lrelgvd~v~i~qYl~P~~~~~~v~~~v~pe~~~~l~~~a~~~gf~~~ 346 (375)
.+..-+|=|+-.+++|+.+..++++++.+ .|.+-+|. |.. ..+. +...++..+.++++..+.|+...
T Consensus 280 ~ieyvLI~GvNDs~eda~~L~~~l~~~~~-~VnlIpyn-~~~-~~~~-~~ps~e~i~~F~~~L~~~Gi~vt 346 (368)
T PRK14456 280 TLVYMLLEGINDSPEDARKLIRFASRFFC-KINLIDYN-SIV-NIKF-EPVCSSTRERFRDRLLDAGLQVT 346 (368)
T ss_pred EEEEEEEcCCCCCHHHHHHHHHHHhcCCC-eeEEeeec-cCC-CCCC-CCCCHHHHHHHHHHHHHCCCcEE
Confidence 45666777889999999999999999854 23333443 311 1221 12456778888888888888664
No 108
>PRK14469 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=99.10 E-value=1.1e-08 Score=102.18 Aligned_cols=203 Identities=13% Similarity=0.145 Sum_probs=134.0
Q ss_pred EeeeCCccCCCCcCCCCCCCCCCCCCCcchHHHHHHHHH---hcCCcEEEEEe-eeCCCCCcccHHHHHHHHHHHHHhC-
Q 017200 132 IMILGDTCTRGCRFCNVKTSRAPPPPDPDEPTNVAEAIA---SWGLDYVVITS-VDRDDLADQGSGHFAQTVRKLKELK- 206 (375)
Q Consensus 132 fm~i~d~C~~~C~FC~v~~~r~~~~ld~eEi~~~a~al~---~~G~~eIvLTs-gdr~dl~d~G~~~~~~lir~Ik~~~- 206 (375)
-+..+.||+.+|.||.-....-...++.+|+++.+..+. ..+++.|+++| |+.-.- .+.+.+.++.++...
T Consensus 104 cissq~GC~l~C~fC~tg~~g~~r~lt~~EI~~qv~~~~~~~~~~v~~Vvf~GmGEPLln----~d~v~~~i~~l~~~~~ 179 (343)
T PRK14469 104 CISTQVGCPVKCIFCATGQSGFVRNLTTGEIVSQILAMEKEEKKKVGNVVYMGMGEPLLN----YENVIKSIKILNHKKM 179 (343)
T ss_pred EEEecCCCCCcCcCCCCCCCCccccCCHHHHHHHHHHHHHhccCCcCeEEEEccChhhhh----HHHHHHHHHHHhchhc
Confidence 344679999999999865432122488999988876543 34789999999 753211 334566676665321
Q ss_pred --CCc-EEEeecCCCCCChHHHHHHHHcCccc-ccccccchH-HHHHHhcC--CCCCHHHHHHHHHHHHHhCCCCceEEE
Q 017200 207 --PNM-LIEALVPDFRGNNGCVREVAKSGLNV-FAHNIETVE-ELQSAVRD--HRANFKQSLDVLMMAKDYVPAGTLTKT 279 (375)
Q Consensus 207 --p~i-~Ie~l~pd~~g~~e~l~~L~~aGldv-~~hnlEtv~-rl~~~mr~--r~~s~~~~l~vl~~ak~~~p~Gl~tkt 279 (375)
-+. +|.+.+- |..+.++.|.++|+|+ ++..+++.+ +.++++.| +++++++.++.++...+.....+.+..
T Consensus 180 ~~~g~~~itisTn---G~~~~i~~L~~~~l~~~LaiSL~a~~~e~r~~i~p~~~~~~l~~Il~~l~~~~~~~~~~v~i~y 256 (343)
T PRK14469 180 KNIGIRRITISTV---GIPEKIIQLAEEGLDVKLALSLHAPTNFKRDQIVPLNKKYSIEEIINAVKIYQKKTGNRVTIEY 256 (343)
T ss_pred ccCCCCeEEEECC---CChHHHHHHHhhCCCcEEEEEeCCCCHHHHHhhcCcCCCCCHHHHHHHHHHHHHHhCCeEEEEE
Confidence 112 4444442 3467899999999994 788888664 77887653 578999999988876653222244445
Q ss_pred eEEEecCCCHHHHHHHHHHHHHcCCcEEeeecCCCCCCCCCCccccCCHHHHHHHHHHHHHhhhhhh
Q 017200 280 SIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQYMRPSKRHMPVSEYITPEAFERYRALGMEMGFRYV 346 (375)
Q Consensus 280 ~imvGlGET~ee~~etl~~Lrelgvd~v~i~qYl~P~~~~~~v~~~v~pe~~~~l~~~a~~~gf~~~ 346 (375)
-+|-|+..+++|+.+..++++.+++. |.+-+|- |... .+ +....+..+.+.++..+.|+...
T Consensus 257 vlI~g~NDs~ed~~~La~llk~~~~~-VnLIpyn-p~~~--~~-~~ps~e~l~~f~~~l~~~gi~vt 318 (343)
T PRK14469 257 ILIKGFNDEIEDAKKLAELLKGLKVF-VNLIPVN-PTVP--GL-EKPSRERIERFKEILLKNGIEAE 318 (343)
T ss_pred EEECCCCCCHHHHHHHHHHHhccCcE-EEEEecC-CCCc--cC-CCCCHHHHHHHHHHHHHCCCeEE
Confidence 56668889999999999999998764 5555553 3211 11 22345677778887777777553
No 109
>PRK14463 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=99.10 E-value=1.8e-08 Score=101.02 Aligned_cols=205 Identities=12% Similarity=0.129 Sum_probs=129.3
Q ss_pred EEeeeCCccCCCCcCCCCCCCCCCCCCCcchHHHHHHHHH-hcCCcEEEEEe-eeCCCCCcccHHHHHHHHHHHHHhC--
Q 017200 131 TIMILGDTCTRGCRFCNVKTSRAPPPPDPDEPTNVAEAIA-SWGLDYVVITS-VDRDDLADQGSGHFAQTVRKLKELK-- 206 (375)
Q Consensus 131 tfm~i~d~C~~~C~FC~v~~~r~~~~ld~eEi~~~a~al~-~~G~~eIvLTs-gdr~dl~d~G~~~~~~lir~Ik~~~-- 206 (375)
..+..+.+|+.+|.||.-........++++|+++.+..+. ..++++|+++| |+ | +.. .+.+.+.++.+++..
T Consensus 105 ~cvSsq~GC~~~C~FC~tg~~~~~r~lt~~EI~~qv~~~~~~~~i~~IvfmG~GE-P-l~n--~~~vi~~l~~l~~~~gl 180 (349)
T PRK14463 105 LCISSQVGCAMGCAFCLTGTFRLTRNLTTAEIVNQVCAVKRDVPVRNIVFMGMGE-P-LAN--LDNVIPALQILTDPDGL 180 (349)
T ss_pred EEEEecCCcCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHhcCCccEEEEecCCc-c-hhc--HHHHHHHHHHhhccccc
Confidence 3455799999999999755422223489999998877654 35799999999 65 3 222 445555566654311
Q ss_pred --CCcEEEeecCCCCCChHHHHHHHHcCcccccccccch-HHHHHHhcC--CCCCHHHHHHHHHHHHHhCCCCceEEEeE
Q 017200 207 --PNMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETV-EELQSAVRD--HRANFKQSLDVLMMAKDYVPAGTLTKTSI 281 (375)
Q Consensus 207 --p~i~Ie~l~pd~~g~~e~l~~L~~aGldv~~hnlEtv-~rl~~~mr~--r~~s~~~~l~vl~~ak~~~p~Gl~tkt~i 281 (375)
+.-+|.+.+-.+ .+.+..+.+...-.++..+++. ++++++|-| ++++.++-++.++...+....-+.+..-+
T Consensus 181 ~~s~r~itVsTnGl---~~~i~~l~~~~~~~LaiSL~a~~~e~r~~I~pink~~~l~~l~~a~~~~~~~~~~~v~ieyvL 257 (349)
T PRK14463 181 QFSTRKVTVSTSGL---VPEMEELGREVTVNLAVSLNATTDEVRDRIMPVNRRYPLAELLAACKAFPLPGRRKITIEYVM 257 (349)
T ss_pred CcCCceEEEECCCc---hHHHHHHhhccCeEEEEeCCCCCHHHHHHhcCcccCCCHHHHHHHHHHHHHhcCCeEEEEEEE
Confidence 112455444332 2344455443211244567766 599998743 57888888888776665332213444556
Q ss_pred EEecCCCHHHHHHHHHHHHHcCCcEEeeecCCCCCCCCCCccccCCHHHHHHHHHHHHHhhhhhh
Q 017200 282 MLGCGETPDQVVSTMEKVRAAGVDVMTFGQYMRPSKRHMPVSEYITPEAFERYRALGMEMGFRYV 346 (375)
Q Consensus 282 mvGlGET~ee~~etl~~Lrelgvd~v~i~qYl~P~~~~~~v~~~v~pe~~~~l~~~a~~~gf~~~ 346 (375)
|=|+.++++|+.+..++++++++ .|.+-+| .|.. .... +..++++.+.++.+..+.|+...
T Consensus 258 I~GvNDs~e~~~~L~~ll~~l~~-~vnlIPy-n~~~-~~~~-~~ps~e~i~~f~~~L~~~gi~v~ 318 (349)
T PRK14463 258 IRGLNDSLEDAKRLVRLLSDIPS-KVNLIPF-NEHE-GCDF-RSPTQEAIDRFHKYLLDKHVTVI 318 (349)
T ss_pred eCCCCCCHHHHHHHHHHHhccCc-eEEEEec-CCCC-CCCC-CCCCHHHHHHHHHHHHHCCceEE
Confidence 66679999999999999999876 4666566 3421 2221 22456778888888777777553
No 110
>PRK14455 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=99.09 E-value=2.2e-08 Score=100.55 Aligned_cols=200 Identities=11% Similarity=0.132 Sum_probs=132.4
Q ss_pred eCCccCCCCcCCCCCCCCCCCCCCcchHHHHHHHHHh------cCCcEEEEEe-eeCCCCCcccHHHHHHHHHHHHHhCC
Q 017200 135 LGDTCTRGCRFCNVKTSRAPPPPDPDEPTNVAEAIAS------WGLDYVVITS-VDRDDLADQGSGHFAQTVRKLKELKP 207 (375)
Q Consensus 135 i~d~C~~~C~FC~v~~~r~~~~ld~eEi~~~a~al~~------~G~~eIvLTs-gdr~dl~d~G~~~~~~lir~Ik~~~p 207 (375)
.+-||+.+|.||+.........++++|+++.+..+.. .|++.||++| |+.- + . .+.+.++++.+++..
T Consensus 115 sqvGC~~~C~FC~t~~~~~~r~lt~~EIv~qv~~~~~~~~~~g~~v~~Vv~~GmGEPL-l-n--~~~v~~~l~~l~~~~- 189 (356)
T PRK14455 115 TQVGCRIGCTFCASTLGGLKRDLEAGEIVAQVMLVQKYLDETEERVSHIVVMGIGEPF-D-N--YDNVMDFLRIINDDK- 189 (356)
T ss_pred CCCCCCCCCCcCCCCCCCCCccCCHHHHHHHHHHHHHHHhhcCCCcceEEEecccccc-C-C--HHHHHHHHHHHhccc-
Confidence 4679999999999886543345999999998775432 3688999999 5432 1 1 456778888887531
Q ss_pred Cc-----EEEeecCCCCCChHHHHHHHHcCccc-ccccccch-HHHHHHhcC--CCCCHHHHHHHHHHHHHhCCCCceEE
Q 017200 208 NM-----LIEALVPDFRGNNGCVREVAKSGLNV-FAHNIETV-EELQSAVRD--HRANFKQSLDVLMMAKDYVPAGTLTK 278 (375)
Q Consensus 208 ~i-----~Ie~l~pd~~g~~e~l~~L~~aGldv-~~hnlEtv-~rl~~~mr~--r~~s~~~~l~vl~~ak~~~p~Gl~tk 278 (375)
++ ++.+.+-.+ ...+..+.+.++++ +...+++. +++++++.| ++++.++.++.++.+.+....-+.+.
T Consensus 190 g~~~s~r~itvsT~G~---~~~i~~l~d~~l~~~LaiSL~a~~~e~r~~l~pi~~~~~l~~Il~~l~~~~~~~~~~v~ie 266 (356)
T PRK14455 190 GLAIGARHITVSTSGI---APKIYDFADEGLQINLAISLHAPNNELRSSLMPINRAYPLEKLMEAIEYYIEKTNRRVTFE 266 (356)
T ss_pred CcccCCCceEEEecCc---hHhHHHHHhcccCeeEEeccCCCCHHHHHHhcCcccCCCHHHHHHHHHHHHHhcCCeEEEE
Confidence 22 443443222 24567777877652 34556765 488887553 56888999999987765321113444
Q ss_pred EeEEEecCCCHHHHHHHHHHHHHcCCcEEeeecCCCCCCCCCCccccCCHHHHHHHHHHHHHhhhhhh
Q 017200 279 TSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQYMRPSKRHMPVSEYITPEAFERYRALGMEMGFRYV 346 (375)
Q Consensus 279 t~imvGlGET~ee~~etl~~Lrelgvd~v~i~qYl~P~~~~~~v~~~v~pe~~~~l~~~a~~~gf~~~ 346 (375)
.-+|=|+.++++|+.+..++++++++ .|.+-+|. |... .+. +...+++...+.++..+.|+...
T Consensus 267 y~lI~gvNDs~ed~~~La~ll~~l~~-~VnLIPyn-p~~~-~ky-~~ps~e~l~~f~~~L~~~gi~v~ 330 (356)
T PRK14455 267 YILLGGVNDQVEHAEELADLLKGIKC-HVNLIPVN-PVPE-RDY-VRTPKEDIFAFEDTLKKNGVNCT 330 (356)
T ss_pred EEEeCCCCCCHHHHHHHHHHHhcCCC-cEEEEecC-cCCC-CCC-cCCCHHHHHHHHHHHHHCCCcEE
Confidence 55555779999999999999999974 45554553 4221 121 12456778888888888888654
No 111
>COG0535 Predicted Fe-S oxidoreductases [General function prediction only]
Probab=99.06 E-value=2.8e-08 Score=97.13 Aligned_cols=192 Identities=18% Similarity=0.279 Sum_probs=140.6
Q ss_pred EeeeCCccCCCCcCCCCCCCCC-CCCCCcchHHHHHHHHHhcC-CcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCCCc
Q 017200 132 IMILGDTCTRGCRFCNVKTSRA-PPPPDPDEPTNVAEAIASWG-LDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNM 209 (375)
Q Consensus 132 fm~i~d~C~~~C~FC~v~~~r~-~~~ld~eEi~~~a~al~~~G-~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p~i 209 (375)
.+.++..|+.+|.||....... +..++.++..+....+.+.| ...+.++||+.--.+| +.++++.+++. +.+
T Consensus 22 ~~~~t~~Cnl~C~~C~~~~~~~~~~el~~~~~~~~~~~~~~~g~~~~v~~~gGEPll~~d-----~~ei~~~~~~~-~~~ 95 (347)
T COG0535 22 GIELTNRCNLACKHCYAEAGKKLPGELSTEEDLRVIDELAELGEIPVVIFTGGEPLLRPD-----LLEIVEYARKK-GGI 95 (347)
T ss_pred EEeeccccCCcCcccccccCCCCccccCHHHHHHHHHHHHHcCCeeEEEEeCCCcccccc-----HHHHHHHHhhc-CCe
Confidence 3447999999999998887653 45688999998899999999 8888899987432233 67788877755 556
Q ss_pred EEEeecCCCCCChHHHHHHHHcCcccccccccchH-HHHHHhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEec-CC
Q 017200 210 LIEALVPDFRGNNGCVREVAKSGLNVFAHNIETVE-ELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGC-GE 287 (375)
Q Consensus 210 ~Ie~l~pd~~g~~e~l~~L~~aGldv~~hnlEtv~-rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~tkt~imvGl-GE 287 (375)
.+...+-...-+.+.++.++++|++.+...++..+ +.+..++..+..++..++.++.+++ .|+. ..+-+-. +.
T Consensus 96 ~~~~~TnG~~~~~~~~~~l~~~g~~~v~iSid~~~~e~hd~~rg~~g~~~~~~~~i~~~~~---~g~~--~~~~~~v~~~ 170 (347)
T COG0535 96 RVSLSTNGTLLTEEVLEKLKEAGLDYVSISLDGLDPETHDPIRGVKGVFKRAVEAIKNLKE---AGIL--VVINTTVTKI 170 (347)
T ss_pred EEEEeCCCccCCHHHHHHHHhcCCcEEEEEecCCChhhhhhhcCCCcHHHHHHHHHHHHHH---cCCe--eeEEEEEecC
Confidence 66555432112568999999999999999999865 7768888667899999999999998 4664 2222223 67
Q ss_pred CHHHHHHHHHHHHHcCCcEEeeecCCCCCCCCCC-ccccCCHHHHHHHH
Q 017200 288 TPDQVVSTMEKVRAAGVDVMTFGQYMRPSKRHMP-VSEYITPEAFERYR 335 (375)
Q Consensus 288 T~ee~~etl~~Lrelgvd~v~i~qYl~P~~~~~~-v~~~v~pe~~~~l~ 335 (375)
+.+++.+.++.++++|++.+.+.+++ |..++.. .....+|+..+.+.
T Consensus 171 n~~~l~~~~~~~~~~g~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~ 218 (347)
T COG0535 171 NYDELPEIADLAAELGVDELNVFPLI-PVGRGEENLELDLTPEEEELLL 218 (347)
T ss_pred cHHHHHHHHHHHHHcCCCEEEEEEEe-ecccccccccccCCHHHHHHHH
Confidence 89999999999999999877775554 4333332 34456666444443
No 112
>TIGR03278 methan_mark_10 putative methanogenesis marker protein 10. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The presence of motifs with seven invariant Cys residues in the N-terminal 50 residues, including three instances of CXXC, would be consistent with function as an oxidoreductase with FeS clusters. The exact function is unknown, but likely is linked to methanogenesis. In most genomes, the member of this family is encoded by a gene next to, and divergently transcribed from, the methyl coenzyme M reductase operon.
Probab=99.03 E-value=3.7e-08 Score=100.43 Aligned_cols=211 Identities=13% Similarity=0.154 Sum_probs=138.4
Q ss_pred CCccCC---CCcCCCCCCCC-CCCCCCcchHHHHHHHHHh-c--CCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCCC
Q 017200 136 GDTCTR---GCRFCNVKTSR-APPPPDPDEPTNVAEAIAS-W--GLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPN 208 (375)
Q Consensus 136 ~d~C~~---~C~FC~v~~~r-~~~~ld~eEi~~~a~al~~-~--G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p~ 208 (375)
-..|.. +|.||.-.... ....++++|+++.++.... . ....|.|+||.-+-+. .++.++++.+++..
T Consensus 29 c~~C~~~~~~C~yC~~~~~e~~g~~~t~~evl~ev~~d~~~~~~~~ggVtisGGGepl~~----~~l~eLl~~lk~~g-- 102 (404)
T TIGR03278 29 CKNCPPGTKGCDYCTRSVWEINGDFIPPQVVLGEVQTSLGFRTGRDTKVTISGGGDVSCY----PELEELTKGLSDLG-- 102 (404)
T ss_pred CCcCCCCCCCCCCCCchhhhhcCCcCCHHHHHHHHHHHHHHhcCCCCEEEEECCcccccC----HHHHHHHHHHHhCC--
Confidence 456744 88888443211 1224789999999888654 2 4688999998655443 46889999999853
Q ss_pred cEEEee-cC-CCCCChHHHHHHHHcCcccccccccch-HHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEec
Q 017200 209 MLIEAL-VP-DFRGNNGCVREVAKSGLNVFAHNIETV-EELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGC 285 (375)
Q Consensus 209 i~Ie~l-~p-d~~g~~e~l~~L~~aGldv~~hnlEtv-~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~tkt~imvGl 285 (375)
+++.+. +. ....+.+.++.+++.|+|.+...+.+. +++++++.. ..+.+..++.++.+.+. .. +.+..-++=|+
T Consensus 103 i~taI~~TnG~~l~~~e~~~~L~~~gld~v~iSvka~dpe~h~kl~G-~~~a~~ILe~L~~L~e~-~~-v~~~ivlIPGi 179 (404)
T TIGR03278 103 LPIHLGYTSGKGFDDPEIAEFLIDNGVREVSFTVFATDPELRREWMK-DPTPEASLQCLRRFCES-CE-VHAASVIIPGV 179 (404)
T ss_pred CCEEEeCCCCcccCCHHHHHHHHHcCCCEEEEecccCCHHHHHHHhC-CCCHHHHHHHHHHHHhc-CC-EEEEEEEeCCc
Confidence 444332 33 223378999999999999999888876 599999873 44558899999998882 22 33344444444
Q ss_pred CCCHHHHHHHHHHHHHcCCcEEeeecCCCCCC-C----CC-Ccc---ccCCHHHHHHH-HHHHHHhhhhhhccchhhhhh
Q 017200 286 GETPDQVVSTMEKVRAAGVDVMTFGQYMRPSK-R----HM-PVS---EYITPEAFERY-RALGMEMGFRYVASGPMVRSS 355 (375)
Q Consensus 286 GET~ee~~etl~~Lrelgvd~v~i~qYl~P~~-~----~~-~v~---~~v~pe~~~~l-~~~a~~~gf~~~~sgp~vrss 355 (375)
-.+ ++..+++++|.++++.-+.+..| ++.. . ++ +.. +..+.+++..+ ++++.+.++.. .--|+|.-|
T Consensus 180 ND~-eel~~ti~~L~~lg~~~V~L~~y-~~~g~~ky~lg~~~~~~~~~~~~~~e~~~~v~~~~~~~~i~~-~g~~~~~~~ 256 (404)
T TIGR03278 180 NDG-DVLWKTCADLESWGAKALILMRF-ANTEEQGLILGNAPIIPGIKPHTVSEFKNIVRETHKEFPIRV-TGTPLCDPE 256 (404)
T ss_pred cCc-HHHHHHHHHHHHCCCCEEEEEec-ccccccccccCCcCcccCCCCCCHHHHHHHHHHHHHHhCCcc-cCCcccccC
Confidence 333 44469999999999998888666 3211 1 11 111 12345666666 78888877653 344577777
Q ss_pred cchhH
Q 017200 356 YKVVG 360 (375)
Q Consensus 356 y~a~~ 360 (375)
||.
T Consensus 257 --ag~ 259 (404)
T TIGR03278 257 --TGA 259 (404)
T ss_pred --CCC
Confidence 665
No 113
>TIGR03821 AblA_like_1 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in E. coli, Buchnera, Yersinia, etc.
Probab=99.01 E-value=1.6e-08 Score=100.17 Aligned_cols=185 Identities=18% Similarity=0.259 Sum_probs=118.6
Q ss_pred EEeeeCCccCCCCcCCCCCCCCC-CCCCCcchHHHHHHHHHh-cCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhC--
Q 017200 131 TIMILGDTCTRGCRFCNVKTSRA-PPPPDPDEPTNVAEAIAS-WGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELK-- 206 (375)
Q Consensus 131 tfm~i~d~C~~~C~FC~v~~~r~-~~~ld~eEi~~~a~al~~-~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~-- 206 (375)
+.+.++++|+.+|+||.-+.... ...++.+++.+.++.+.+ .|+++|+||||+--..+| ..+.++++.+....
T Consensus 98 ~l~~~t~~Cn~~Cr~C~~~~~~~~~~~~~~~~~~~~i~~i~~~~~i~~VvltGGEPL~~~d---~~L~~ll~~l~~i~~~ 174 (321)
T TIGR03821 98 VLLIVTGGCAINCRYCFRRHFPYQENQPNKAQWKEALEYIAQHPEINEVILSGGDPLMAKD---HRLDWLLNLLEQIPHL 174 (321)
T ss_pred EEEEeCCCcCCcCcCCCCCCcCCCCCCCCHHHHHHHHHHHHhcCCCCEEEEeCcccccCCc---hHHHHHHHHHHhCCCC
Confidence 45668999999999998654321 123556777777777774 499999999997433343 23556666665421
Q ss_pred CCcEEEe----ecCCCCCChHHHHHHHHcCcccccc-cccchHHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCceE--EE
Q 017200 207 PNMLIEA----LVPDFRGNNGCVREVAKSGLNVFAH-NIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLT--KT 279 (375)
Q Consensus 207 p~i~Ie~----l~pd~~g~~e~l~~L~~aGldv~~h-nlEtv~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~t--kt 279 (375)
..++|.. +.|... +.+.++.|+++|+..+.. .++..+++. +...+.++.+++ .|+.+ .|
T Consensus 175 ~~iri~tr~~~~~p~ri-t~el~~~L~~~~~~~~~~~h~dh~~Ei~----------d~~~~ai~~L~~---~Gi~v~~qt 240 (321)
T TIGR03821 175 KRLRIHTRLPVVIPDRI-TSGLCDLLANSRLQTVLVVHINHANEID----------AEVADALAKLRN---AGITLLNQS 240 (321)
T ss_pred cEEEEecCcceeeHHHh-hHHHHHHHHhcCCcEEEEeeCCChHhCc----------HHHHHHHHHHHH---cCCEEEecc
Confidence 2345542 444433 678899999999776531 344334443 335567888887 56654 45
Q ss_pred eEEEecCCCHHHHHHHHHHHHHcCCcEEeeecCCCCCCCCCCccccCCHHHHHHHH
Q 017200 280 SIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQYMRPSKRHMPVSEYITPEAFERYR 335 (375)
Q Consensus 280 ~imvGlGET~ee~~etl~~Lrelgvd~v~i~qYl~P~~~~~~v~~~v~pe~~~~l~ 335 (375)
.++=|+-.+.+++.+.++.+.++|+.-..++++ .|+.. ... -.+++++..++.
T Consensus 241 vllkgiNDn~~~l~~L~~~l~~~gv~pyyl~~~-~p~gg-~~~-f~v~~~~~~~i~ 293 (321)
T TIGR03821 241 VLLRGVNDNADTLAALSERLFDAGVLPYYLHLL-DKVQG-AAH-FDVDDERARALM 293 (321)
T ss_pred eeeCCCCCCHHHHHHHHHHHHHcCCeeCccccc-CCCCC-ccc-ccCCHHHHHHHH
Confidence 555577789999999999999999987777443 56442 221 235565554443
No 114
>PRK14460 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=98.96 E-value=1.2e-07 Score=95.29 Aligned_cols=202 Identities=15% Similarity=0.167 Sum_probs=133.3
Q ss_pred eeeCCccCCCCcCCCCCCCCCCCCCCcchHHHHHHHHH----hc--C---CcEEEEEe-eeCCCCCcccHHHHHHHHHHH
Q 017200 133 MILGDTCTRGCRFCNVKTSRAPPPPDPDEPTNVAEAIA----SW--G---LDYVVITS-VDRDDLADQGSGHFAQTVRKL 202 (375)
Q Consensus 133 m~i~d~C~~~C~FC~v~~~r~~~~ld~eEi~~~a~al~----~~--G---~~eIvLTs-gdr~dl~d~G~~~~~~lir~I 202 (375)
+.-+.+|+.+|.||+-....-...++++|+++.+.... +. | ++.|+++| |+. -+ . .+.+.+.++.+
T Consensus 106 vSsq~GC~~~C~FC~tg~~g~~rnlt~~EI~~qv~~~~~~~~~~g~g~~~i~nIvfmGmGEP-Ll-n--~~~v~~~l~~l 181 (354)
T PRK14460 106 LSCQVGCAMGCTFCSTGTMGFERNMTMGEILGQVLVAREHLGDNGPDHPILRNLVFMGMGEP-LL-N--LDEVMRSLRTL 181 (354)
T ss_pred eeCCCCcCCCCccCCCCCCCCCcCCCHHHHHHHHHHHHHHHhhccCCCcceeEEEEecCCcc-cC-C--HHHHHHHHHHH
Confidence 33478999999999865432123589999999884332 22 3 78999999 543 22 1 45566777777
Q ss_pred HHhC----CCcEEEeecCCCCCChHHHHHHHHcCcccccccccch-HHHHHHhcCC--CCCHHHHHHHHHHHHHhCCCCc
Q 017200 203 KELK----PNMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETV-EELQSAVRDH--RANFKQSLDVLMMAKDYVPAGT 275 (375)
Q Consensus 203 k~~~----p~i~Ie~l~pd~~g~~e~l~~L~~aGldv~~hnlEtv-~rl~~~mr~r--~~s~~~~l~vl~~ak~~~p~Gl 275 (375)
++.. +..++.+.+-. ..+.++.|.++|+..++..+++. ++.++++.+. +++.++.++.++.........+
T Consensus 182 ~~~~Gl~~~~r~itvsT~G---~~~~i~~L~~~~l~~L~iSLha~~~e~r~~i~p~~~~~~l~~ll~al~~~~~~~~~~v 258 (354)
T PRK14460 182 NNEKGLNFSPRRITVSTCG---IEKGLRELGESGLAFLAVSLHAPNQELRERIMPKAARWPLDDLIAALKSYPLKTRERV 258 (354)
T ss_pred hhhhccCCCCCeEEEECCC---ChHHHHHHHhCCCcEEEEeCCCCCHHHHHHhcCccccCCHHHHHHHHHHHHHhcCCeE
Confidence 6532 11245555533 36778999999987777778765 4999988742 4677888877765433221224
Q ss_pred eEEEeEEEecCCCHHHHHHHHHHHHHcCCcEEeeecCCCCCCCCCCccccCCHHHHHHHHHHHHHhhhhh
Q 017200 276 LTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQYMRPSKRHMPVSEYITPEAFERYRALGMEMGFRY 345 (375)
Q Consensus 276 ~tkt~imvGlGET~ee~~etl~~Lrelgvd~v~i~qYl~P~~~~~~v~~~v~pe~~~~l~~~a~~~gf~~ 345 (375)
.+..-+|=|+.++++|+.+..++++.+++ .|.+-+|- |. .+.+. +...+++.+.+.++..+.|+..
T Consensus 259 ~iey~LI~GvNDs~ed~~~l~~~l~~~~~-~VnLIpyn-~~-~g~~y-~~p~~e~v~~f~~~l~~~Gi~v 324 (354)
T PRK14460 259 TFEYLLLGGVNDSLEHARELVRLLSRTKC-KLNLIVYN-PA-EGLPY-SAPTEERILAFEKYLWSKGITA 324 (354)
T ss_pred EEEEEEECCCCCCHHHHHHHHHHHhcCCC-cEEEEcCC-CC-CCCCC-CCCCHHHHHHHHHHHHHCCCeE
Confidence 55666677889999999999999999876 35555553 31 12222 2345677888888877777754
No 115
>PRK14466 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=98.94 E-value=2.1e-07 Score=93.04 Aligned_cols=205 Identities=10% Similarity=0.042 Sum_probs=133.8
Q ss_pred EEEeeeCCccCCCCcCCCCCCCCCCCCCCcchHHHHHHHHHhc-CCcEEEEEe-eeCCCCCcccHHHHHHHHHHHHHhCC
Q 017200 130 ATIMILGDTCTRGCRFCNVKTSRAPPPPDPDEPTNVAEAIASW-GLDYVVITS-VDRDDLADQGSGHFAQTVRKLKELKP 207 (375)
Q Consensus 130 atfm~i~d~C~~~C~FC~v~~~r~~~~ld~eEi~~~a~al~~~-G~~eIvLTs-gdr~dl~d~G~~~~~~lir~Ik~~~p 207 (375)
.-.+-.+.||+.+|.||.-........++.+||+..+..+.+. +++.|+++| |+.- . +.+.+.+.++.++....
T Consensus 104 t~cvSsQvGC~~~C~FC~Tg~~g~~rnLt~~EIl~Qv~~~~~~~~i~nIvfmGmGEPL--~--N~d~vi~al~~l~~~~g 179 (345)
T PRK14466 104 TLCVSSQVGCKMNCLFCMTGKQGFTGNLTAAQILNQIYSLPERDKLTNLVFMGMGEPL--D--NLDEVLKALEILTAPYG 179 (345)
T ss_pred EEEEEcCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHhhhhcCCCCeEEEeeeCcCc--c--cHHHHHHHHHHHhhccc
Confidence 3345557899999999996653222348999999999887543 689999999 6532 1 14456666666654321
Q ss_pred ----CcEEEeecCCCCCChHHHHHHHHcCcccccccccch-HHHHHHhcC--CCCCHHHHHHHHHHHHHhCCCCceEEEe
Q 017200 208 ----NMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETV-EELQSAVRD--HRANFKQSLDVLMMAKDYVPAGTLTKTS 280 (375)
Q Consensus 208 ----~i~Ie~l~pd~~g~~e~l~~L~~aGldv~~hnlEtv-~rl~~~mr~--r~~s~~~~l~vl~~ak~~~p~Gl~tkt~ 280 (375)
.-+|.+.+-. ....+..+.+...-.++..+.+. +++++++-| ++++.++-++.++...+....-+.+.--
T Consensus 180 ~~~s~r~ItVsT~G---~~~~i~~l~~~~~~~LavSLha~~~e~R~~i~P~~~~~~l~~l~~al~~y~~~~~rri~~Ey~ 256 (345)
T PRK14466 180 YGWSPKRITVSTVG---LKKGLKRFLEESECHLAISLHSPFPEQRRELMPAEKAFSIKEIIDLLKNYDFSKQRRVSFEYI 256 (345)
T ss_pred cCcCCceEEEEcCC---CchHHHHHhhccCcEEEEEcCCCCHHHHHHhcCCccCCCHHHHHHHHHHHHHhhCCEEEEEEE
Confidence 1255555432 23335555543333345556654 589999886 4577899888888865543332455666
Q ss_pred EEEecCCCHHHHHHHHHHHHHcCCcEEeeecCCCCCCCCCCccccCCHHHHHHHHHHHHHhhhhh
Q 017200 281 IMLGCGETPDQVVSTMEKVRAAGVDVMTFGQYMRPSKRHMPVSEYITPEAFERYRALGMEMGFRY 345 (375)
Q Consensus 281 imvGlGET~ee~~etl~~Lrelgvd~v~i~qYl~P~~~~~~v~~~v~pe~~~~l~~~a~~~gf~~ 345 (375)
+|=|+-.++||..+..+.++.++ ..|.+-+|. |.. +.+ .+.+..++.+.+.++-.+.|+..
T Consensus 257 Li~gvND~~e~a~~L~~ll~~~~-~~VNLIp~N-p~~-~~~-~~~~s~~~~~~F~~~L~~~gi~~ 317 (345)
T PRK14466 257 VFKGLNDSLKHAKELVKLLRGID-CRVNLIRFH-AIP-GVD-LEGSDMARMEAFRDYLTSHGVFT 317 (345)
T ss_pred EeCCCCCCHHHHHHHHHHHcCCC-ceEEEEecC-CCC-CCC-CcCCCHHHHHHHHHHHHHCCCcE
Confidence 66688999999999999999887 456666664 321 222 22345677888888777777644
No 116
>PRK14468 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=98.94 E-value=1.4e-07 Score=94.33 Aligned_cols=203 Identities=14% Similarity=0.139 Sum_probs=131.7
Q ss_pred EeeeCCccCCCCcCCCCCCCCCCCCCCcchHHHHHHHHHhc------CCcEEEEEe-eeCCCCCcccHHHHHHHHHHHHH
Q 017200 132 IMILGDTCTRGCRFCNVKTSRAPPPPDPDEPTNVAEAIASW------GLDYVVITS-VDRDDLADQGSGHFAQTVRKLKE 204 (375)
Q Consensus 132 fm~i~d~C~~~C~FC~v~~~r~~~~ld~eEi~~~a~al~~~------G~~eIvLTs-gdr~dl~d~G~~~~~~lir~Ik~ 204 (375)
.+..+.+|+.+|.||.-....-...++++|+++.+..+... .++.|+++| |+--. . .+.+.+.++.+..
T Consensus 96 cvSsq~GC~l~C~fC~tg~~g~~r~Lt~~EI~~qv~~~~~~~g~~~~~i~~Vvf~GmGEPll--n--~~~v~~~i~~l~~ 171 (343)
T PRK14468 96 CVSTMVGCPAGCAFCATGAMGFGRNLTAAEILDQVLAVAGHEGISPREIRNVVLMGMGEPLL--N--YENVLKAARIMLH 171 (343)
T ss_pred EEEecCCCCCcCCCCCCCCCCCCCCCCHHHHHHHHHHHHhhcCcCcCCccEEEEeccCcccc--C--HHHHHHHHHHhcc
Confidence 34568999999999986543222358999999988765443 267999998 65321 1 3445555555532
Q ss_pred hCC-Cc---EEEeecCCCCCChHHHHHHHHcCccc-ccccccch-HHHHHHhcC--CCCCHHHHHHHHHHHHHhCCCCce
Q 017200 205 LKP-NM---LIEALVPDFRGNNGCVREVAKSGLNV-FAHNIETV-EELQSAVRD--HRANFKQSLDVLMMAKDYVPAGTL 276 (375)
Q Consensus 205 ~~p-~i---~Ie~l~pd~~g~~e~l~~L~~aGldv-~~hnlEtv-~rl~~~mr~--r~~s~~~~l~vl~~ak~~~p~Gl~ 276 (375)
... ++ +|.+.+- |....++.|.++++++ +...+.+. ++.++++.| ++++.++-++.++...+....-+.
T Consensus 172 ~~g~~l~~r~itvST~---G~~~~i~~L~~~~l~~~LaiSL~a~d~e~r~~i~p~~~~~~l~~ll~~l~~~~~~~~~~V~ 248 (343)
T PRK14468 172 PQALAMSPRRVTLSTV---GIPKGIRRLAEEDLGVRLALSLHAPDEETRQRIIPTAHRYSIAEIMAAVRHYQAVTGRRVT 248 (343)
T ss_pred cccccccCceEEEECC---CChHHHHHHHHhCcCcEEEEEcCCCCHHHHHHhccccccCCHHHHHHHHHHHHHhcCCeEE
Confidence 110 11 3444332 2356788899988873 66667765 488888874 356889999998766554322144
Q ss_pred EEEeEEEecCCCHHHHHHHHHHHHHcCCcEEeeecCCCCCCCCCCccccCCHHHHHHHHHHHHHhhhhh
Q 017200 277 TKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQYMRPSKRHMPVSEYITPEAFERYRALGMEMGFRY 345 (375)
Q Consensus 277 tkt~imvGlGET~ee~~etl~~Lrelgvd~v~i~qYl~P~~~~~~v~~~v~pe~~~~l~~~a~~~gf~~ 345 (375)
+..-+|=|+-.++||+.+..+.++++.+ .|.+-+|. |.. ... .+..++++.+.+.++-.+.|+..
T Consensus 249 ieyvLI~GvNDs~e~~~~L~~ll~~~~~-~VnLIPyn-p~~-~~~-~~~ps~e~i~~f~~~L~~~Gi~v 313 (343)
T PRK14468 249 LEYTMLKGVNDHLWQAELLADLLRGLVS-HVNLIPFN-PWE-GSP-FQSSPRAQILAFADVLERRGVPV 313 (343)
T ss_pred EEEEEeCCCcCCHHHHHHHHHHHhcCCc-EEEEEcCC-CCC-CCC-CCCCCHHHHHHHHHHHHHCCCeE
Confidence 5566666889999999999999999865 45565664 311 111 22345677888887777777754
No 117
>PRK13762 tRNA-modifying enzyme; Provisional
Probab=98.94 E-value=7.4e-08 Score=95.56 Aligned_cols=206 Identities=12% Similarity=0.165 Sum_probs=131.2
Q ss_pred CccCCCCcCCCCCCCCC--C-----CCCCcchHHHHHHHHHh---c---C--------------CcEEEEEeeeCCCCCc
Q 017200 137 DTCTRGCRFCNVKTSRA--P-----PPPDPDEPTNVAEAIAS---W---G--------------LDYVVITSVDRDDLAD 189 (375)
Q Consensus 137 d~C~~~C~FC~v~~~r~--~-----~~ld~eEi~~~a~al~~---~---G--------------~~eIvLTsgdr~dl~d 189 (375)
.+|+.+|.||.-+.... . ...+++||++.+..... . | .+++.|+++--|-+.
T Consensus 66 ~~C~~rC~fC~r~~~~~~~~~~~~~~~~~peeiv~~~~~~~~~~i~g~~g~~~v~~~~~~ea~~~~~v~iSl~GEPlL~- 144 (322)
T PRK13762 66 AWCNQRCLFCWRPLEEDVGLELKEPEWDDPEEIVEESIKEQRKLLSGYKGNPKVDREKFEEAMEPKHVAISLSGEPTLY- 144 (322)
T ss_pred HHHhccCceeeccCCCCcccccCCCCCCCHHHHHHHHHHHHHHHhhccCCCCCCCHHHhhhccCCCEEEEeCCccccch-
Confidence 46999999999775321 1 12577888777655421 1 3 357888855223221
Q ss_pred ccHHHHHHHHHHHHHhCCCcEEEeecCCCCCChHHHHHHHHcCcccccccccchH-HHHHHhcC--CCCCHHHHHHHHHH
Q 017200 190 QGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETVE-ELQSAVRD--HRANFKQSLDVLMM 266 (375)
Q Consensus 190 ~G~~~~~~lir~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGldv~~hnlEtv~-rl~~~mr~--r~~s~~~~l~vl~~ 266 (375)
.++.++++.+++. ++.+.+.+-.. .++.++.| ++++|.+...++..+ +.|++++. .+.+++..++.|+.
T Consensus 145 ---p~l~eli~~~k~~--Gi~~~L~TNG~--~~e~l~~L-~~~~d~i~VSLda~~~e~~~~i~~~~~~~~~~~vl~~L~~ 216 (322)
T PRK13762 145 ---PYLPELIEEFHKR--GFTTFLVTNGT--RPDVLEKL-EEEPTQLYVSLDAPDEETYKKINRPVIPDAWERILETLEL 216 (322)
T ss_pred ---hhHHHHHHHHHHc--CCCEEEECCCC--CHHHHHHH-HhcCCEEEEEccCCCHHHHHHHhCCCCCCcHHHHHHHHHH
Confidence 2488899999875 46665555333 36788888 778999888888764 89999973 24689999999999
Q ss_pred HHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcCCcEEeeecCCCCCC-C-CCCccccCCHHHHHHHHHHHHHh-hh
Q 017200 267 AKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQYMRPSK-R-HMPVSEYITPEAFERYRALGMEM-GF 343 (375)
Q Consensus 267 ak~~~p~Gl~tkt~imvGlGET~ee~~etl~~Lrelgvd~v~i~qYl~P~~-~-~~~v~~~v~pe~~~~l~~~a~~~-gf 343 (375)
+++.... +.+.+.++-| .++.+..+..+++++++++.|-+-+|+.-+. + .+.....+++++...+.+...+. |+
T Consensus 217 l~~~~~~-~~ir~tlv~g--~Nd~e~~~~a~l~~~~~~~~Iel~~y~~~G~~k~~l~~~~~p~~eev~~~~~~l~~~~~~ 293 (322)
T PRK13762 217 LPSKKTR-TVIRITLVKG--YNMHDPEGFAKLIERANPDFVEVKAYMHVGYSRNRLTRDNMPSHEEVREFAKELAEYTGY 293 (322)
T ss_pred HHhCCCC-EEEEEEEECC--cCccHHHHHHHHHHHcCCCEEEEECCeECCCccccccccCCcCHHHHHHHHHHHHHhcCC
Confidence 9984211 3345445444 4555555888888999999998877752211 1 12223345666666665544443 66
Q ss_pred hhhccchhhhh
Q 017200 344 RYVASGPMVRS 354 (375)
Q Consensus 344 ~~~~sgp~vrs 354 (375)
....-.|..|-
T Consensus 294 ~i~~~~~~s~~ 304 (322)
T PRK13762 294 EILDESEPSRV 304 (322)
T ss_pred eEEecCCCceE
Confidence 54444444443
No 118
>TIGR00238 KamA family protein. Note that the E. coli homolog was expressed in E. coli and purified and found not to display display lysine 2,3-aminomutase activity. Active site residues are found in 100 residue extension in B. subtilis. Name changed to KamA family protein.
Probab=98.93 E-value=3.4e-08 Score=98.30 Aligned_cols=169 Identities=12% Similarity=0.183 Sum_probs=113.9
Q ss_pred EEEEeeeCCccCCCCcCCCCCCCCCC-CCCCcchHHHHHHHHHh-cCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhC
Q 017200 129 TATIMILGDTCTRGCRFCNVKTSRAP-PPPDPDEPTNVAEAIAS-WGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELK 206 (375)
Q Consensus 129 tatfm~i~d~C~~~C~FC~v~~~r~~-~~ld~eEi~~~a~al~~-~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~ 206 (375)
...++.++++|+.+|+||..+..... .....+++.+.++.+.+ .|+++|+||||+--.++| ..+.++++.|++.
T Consensus 113 ~rvll~~T~gCn~~C~yC~~~~~~~~~~~~~~~~~~~~i~~i~~~~~i~eV~lsGGDPLl~~d---~~L~~ll~~L~~i- 188 (331)
T TIGR00238 113 NRALFLVKGGCAVNCRYCFRRHFPYKENPGNKKKWQKALDYIAEHPEIIEILISGGDPLMAKD---HELEWLLKRLEEI- 188 (331)
T ss_pred CcEEEEeCCCCCCCCcCCCCCCcCCCCCCccHHHHHHHHHHHHhCCCcCEEEEECCccccCCH---HHHHHHHHHHHhc-
Confidence 34567789999999999987543211 11235777777777764 589999999998544443 3467778777753
Q ss_pred CC---cEEEeecCCCC---CChHHHHHHHHcCcccccccccchH-HHHHHhcCCCCCHHHHHHHHHHHHHhCCCCc--eE
Q 017200 207 PN---MLIEALVPDFR---GNNGCVREVAKSGLNVFAHNIETVE-ELQSAVRDHRANFKQSLDVLMMAKDYVPAGT--LT 277 (375)
Q Consensus 207 p~---i~Ie~l~pd~~---g~~e~l~~L~~aGldv~~hnlEtv~-rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl--~t 277 (375)
|. +++..-+|... -+++.++.|+++|+..+-..+...+ ++ .++..+.++.+++ .|+ .+
T Consensus 189 ~~~~~IRi~tr~~~~~P~rit~el~~~L~~~~~~~~~vsh~nh~~Ei----------~~~~~~ai~~L~~---aGi~v~~ 255 (331)
T TIGR00238 189 PHLVRLRIGTRLPVVIPQRITDELCELLASFELQLMLVTHINHCNEI----------TEEFAEAMKKLRT---VNVTLLN 255 (331)
T ss_pred CCccEEEeecCCCccCchhcCHHHHHHHHhcCCcEEEEccCCChHhC----------CHHHHHHHHHHHH---cCCEEEe
Confidence 33 45554444321 1678899999999876543322222 22 2455677777777 455 45
Q ss_pred EEeEEEecCCCHHHHHHHHHHHHHcCCcEEeeecCCCC
Q 017200 278 KTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQYMRP 315 (375)
Q Consensus 278 kt~imvGlGET~ee~~etl~~Lrelgvd~v~i~qYl~P 315 (375)
.+.++=|.-.+.+++.+.++.|.++|+.-..+.++ .|
T Consensus 256 qtvLl~gvnD~~~~l~~L~~~l~~~gV~pyyl~~~-~~ 292 (331)
T TIGR00238 256 QSVLLRGVNDRAQILAKLSIALFKVGIIPYYLHYL-DK 292 (331)
T ss_pred ecceECCcCCCHHHHHHHHHHHhhcCeecCeecCc-CC
Confidence 77778888888899999999999999876666443 45
No 119
>PRK14457 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=98.88 E-value=4.4e-07 Score=90.87 Aligned_cols=205 Identities=11% Similarity=0.134 Sum_probs=134.7
Q ss_pred EEEEeeeCCccCCCCcCCCCCCCCCCCCCCcchHHHHHHHHHhc---CCcEEEEEe-eeCCCCCcccHHHHHHHHHHHHH
Q 017200 129 TATIMILGDTCTRGCRFCNVKTSRAPPPPDPDEPTNVAEAIASW---GLDYVVITS-VDRDDLADQGSGHFAQTVRKLKE 204 (375)
Q Consensus 129 tatfm~i~d~C~~~C~FC~v~~~r~~~~ld~eEi~~~a~al~~~---G~~eIvLTs-gdr~dl~d~G~~~~~~lir~Ik~ 204 (375)
+..++.-+-||+.+|.||.-....-...++++|++..+..+.+. +++.|+++| |+.-. . .+.+.+.++.++.
T Consensus 101 ~t~cvSsqvGC~~~C~FC~tg~~g~~rnlt~~EIv~qv~~~~~~~~~~~~~IvfmGmGEPll--n--~~~v~~~i~~l~~ 176 (345)
T PRK14457 101 LTVCVSSQVGCPMACDFCATGKGGLKRSLKAHEIVDQVLTVQEDMQRRVSHVVFMGMGEPLL--N--IDEVLAAIRCLNQ 176 (345)
T ss_pred CEEEEeCCCCCCCcCCcCCCCCCCCccccCHHHHHHHHHHHHHHhcCCCCEEEEEecCcccc--C--HHHHHHHHHHHhc
Confidence 44556567899999999987653222348999999988776543 689999999 65321 1 3445666666654
Q ss_pred hCCCc---EEEeecCCCCCChHHHHHHHHcCc------c-cccccccch-HHHHHHhcC--CCCCHHHHHHHHHH-HHHh
Q 017200 205 LKPNM---LIEALVPDFRGNNGCVREVAKSGL------N-VFAHNIETV-EELQSAVRD--HRANFKQSLDVLMM-AKDY 270 (375)
Q Consensus 205 ~~p~i---~Ie~l~pd~~g~~e~l~~L~~aGl------d-v~~hnlEtv-~rl~~~mr~--r~~s~~~~l~vl~~-ak~~ 270 (375)
.. ++ +|.+++- |..+.++.|.+.++ + .+...+... +++++++.| +++..++.++.++. +.+.
T Consensus 177 ~~-~i~~r~itvST~---G~~~~i~~L~~~~~~~~~~~~~~laiSLha~~~e~r~~i~p~~~~~~l~~l~~~~~~y~~~~ 252 (345)
T PRK14457 177 DL-GIGQRRITVSTV---GVPKTIPQLAELAFQRLGRLQFTLAVSLHAPNQKLRETLIPSAKNYPIENLLEDCRHYVAIT 252 (345)
T ss_pred cc-CCccCceEEECC---CchhhHHHHHhhhhhhcccCceEEEEEeCCCCHHHHHHhcCCccCCCHHHHHHHHHHHHHHh
Confidence 32 33 5555542 34556888887762 3 244455554 588888875 46777777766654 4443
Q ss_pred CCCCceEEEeEEEecCCCHHHHHHHHHHHHHcCCcEEeeecCCCCCCCCCCccccCCHHHHHHHHHHHHHhhhhhh
Q 017200 271 VPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQYMRPSKRHMPVSEYITPEAFERYRALGMEMGFRYV 346 (375)
Q Consensus 271 ~p~Gl~tkt~imvGlGET~ee~~etl~~Lrelgvd~v~i~qYl~P~~~~~~v~~~v~pe~~~~l~~~a~~~gf~~~ 346 (375)
+.-+.+..-+|=|+-.++|++.+..++++.+++ .|.+-+| .|.. ..+. +...+++.+.+.++..+.|+...
T Consensus 253 -gr~I~iey~LIpGvNDs~e~a~~La~~l~~l~~-~VnLIPy-np~~-~~~~-~~ps~e~i~~f~~~L~~~Gi~vt 323 (345)
T PRK14457 253 -GRRVSFEYILLGGVNDLPEHAEELANLLRGFQS-HVNLIPY-NPID-EVEF-QRPSPKRIQAFQRVLEQRGVAVS 323 (345)
T ss_pred -CCEEEEEEEEECCcCCCHHHHHHHHHHHhcCCC-eEEEecC-CCCC-CCCC-CCCCHHHHHHHHHHHHHCCCeEE
Confidence 222667777888999999999999999999876 4666556 2421 1122 22456778888888888787653
No 120
>PRK13758 anaerobic sulfatase-maturase; Provisional
Probab=98.85 E-value=4.3e-07 Score=90.92 Aligned_cols=192 Identities=8% Similarity=0.105 Sum_probs=124.0
Q ss_pred eeeCCccCCCCcCCCCCCCCC------CCCCCcchHHHHHHHHHhc--CCcEEEEEeeeCCCCCcccHHHHHHHHHHHHH
Q 017200 133 MILGDTCTRGCRFCNVKTSRA------PPPPDPDEPTNVAEAIASW--GLDYVVITSVDRDDLADQGSGHFAQTVRKLKE 204 (375)
Q Consensus 133 m~i~d~C~~~C~FC~v~~~r~------~~~ld~eEi~~~a~al~~~--G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~ 204 (375)
+..++.|+.+|.||....... ...++.+.+...++.+.+. +...|.+|||+.--.+ .+.+.++++.+++
T Consensus 9 ~~~t~~CNl~C~yC~~~~~~~~~~~~~~~~m~~~~~~~~i~~~~~~~~~~~~i~~~GGEPll~~---~~~~~~~~~~~~~ 85 (370)
T PRK13758 9 KPASSGCNLKCTYCFYHSLSDNRNVKSYGIMRDEVLESMVKRVLNEAEGHCSFAFQGGEPTLAG---LEFFEELMELQRK 85 (370)
T ss_pred ecCCCCcCCCCcccCCcCccccccccccCCCCHHHHHHHHHHHHhccCCceEEEEECCccccCC---hHHHHHHHHHHHH
Confidence 334589999999998764211 1236777777777766554 4567899998632112 2345677777766
Q ss_pred hC-CCcE--EEeecCCCCCChHHHHHHHHcCcccccccccchHHHHHHhcC---CCCCHHHHHHHHHHHHHhCCCCceEE
Q 017200 205 LK-PNML--IEALVPDFRGNNGCVREVAKSGLNVFAHNIETVEELQSAVRD---HRANFKQSLDVLMMAKDYVPAGTLTK 278 (375)
Q Consensus 205 ~~-p~i~--Ie~l~pd~~g~~e~l~~L~~aGldv~~hnlEtv~rl~~~mr~---r~~s~~~~l~vl~~ak~~~p~Gl~tk 278 (375)
.. .++. +.+.+-...-+++.++.|++.++ .+...++..++++..+|. .+.+|+..++.++.+++. |+.+.
T Consensus 86 ~~~~~~~~~~~i~TNG~ll~~~~~~~l~~~~~-~v~iSlDg~~~~hd~~R~~~~g~~~f~~v~~~i~~l~~~---~~~~~ 161 (370)
T PRK13758 86 HNYKNLKIYNSLQTNGTLIDESWAKFLSENKF-LVGLSMDGPKEIHNLNRKDCCGLDTFSKVERAAELFKKY---KVEFN 161 (370)
T ss_pred hccCCCeEEEEEEecCEecCHHHHHHHHHcCc-eEEEeecCCHHHhccccCCCCCCccHHHHHHHHHHHHHh---CCCce
Confidence 42 2333 34444322226788899998885 788888887777777762 367899999999999984 55555
Q ss_pred EeEEEecCCCHHHHHHHHHHHHHcCCcEEeeecCCCCCCCCCCccc-cCCHHHHH
Q 017200 279 TSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQYMRPSKRHMPVSE-YITPEAFE 332 (375)
Q Consensus 279 t~imvGlGET~ee~~etl~~Lrelgvd~v~i~qYl~P~~~~~~v~~-~v~pe~~~ 332 (375)
..+++.- .+.+++.+.++.++++|++.+.+...+-|...+..... .+.|+++.
T Consensus 162 i~~~v~~-~n~~~l~~i~~~~~~~g~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~ 215 (370)
T PRK13758 162 ILCVVTS-NTARHVNKIYKYFKEKDFKFLQFINCLDPLYEEKGKYNYSLKPKDYT 215 (370)
T ss_pred EEEEecc-ccccCHHHHHHHHHHcCCCeEeeeeccCccccccCCCcCccCHHHHH
Confidence 5555543 46778888899999999988766444445333322222 24565443
No 121
>COG2100 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=98.85 E-value=1.3e-07 Score=92.57 Aligned_cols=200 Identities=20% Similarity=0.268 Sum_probs=134.3
Q ss_pred CCccCCCCcCCCCCCC---CCCC---CCCcchHHHHHHHHHhc--CCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCC
Q 017200 136 GDTCTRGCRFCNVKTS---RAPP---PPDPDEPTNVAEAIASW--GLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKP 207 (375)
Q Consensus 136 ~d~C~~~C~FC~v~~~---r~~~---~ld~eEi~~~a~al~~~--G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p 207 (375)
+.+|+.+|-||++..+ |... -.|+|-+++-.+.+++. +.-|.+|-|+-.+-+ .-|+.++++++++. |
T Consensus 114 ~tgCnlnCIfCSVdeGp~SrtR~~dy~Vd~eyLl~w~~kVa~~KgkglEaHlDGqGEP~l----YP~l~~lVqalk~~-~ 188 (414)
T COG2100 114 STGCNLNCIFCSVDEGPYSRTRKLDYVVDPEYLLEWFEKVARFKGKGLEAHLDGQGEPLL----YPHLVDLVQALKEH-K 188 (414)
T ss_pred CccccceeEEEeccCCcccceeccceEecHHHHHHHHHHHHhhhCCCeEEEecCCCCCcc----chhHHHHHHHHhcC-C
Confidence 5799999999999753 2211 26888777766666543 234888888755543 24789999999876 5
Q ss_pred CcEEEee-cCCCCCChHHHHHHHHcCcccccccccchH-HHHHHhcC-CCCCHHHHHHHHHHHHHhCCCCceEEEeEEEe
Q 017200 208 NMLIEAL-VPDFRGNNGCVREVAKSGLNVFAHNIETVE-ELQSAVRD-HRANFKQSLDVLMMAKDYVPAGTLTKTSIMLG 284 (375)
Q Consensus 208 ~i~Ie~l-~pd~~g~~e~l~~L~~aGldv~~hnlEtv~-rl~~~mr~-r~~s~~~~l~vl~~ak~~~p~Gl~tkt~imvG 284 (375)
++.+-++ +-...-+.+.+++|.+||+|.++..++..| ++-+.+.+ +.|+.+..+++.+.+.+ .|+.+-..=++=
T Consensus 189 ~v~vVSmQTng~~L~~~lv~eLeeAGLdRiNlSv~aLDpk~Ak~L~G~~dYdv~kvle~aE~i~~---a~idvlIaPv~l 265 (414)
T COG2100 189 GVEVVSMQTNGVLLSKKLVDELEEAGLDRINLSVDALDPKLAKMLAGRKDYDVKKVLEVAEYIAN---AGIDVLIAPVWL 265 (414)
T ss_pred CceEEEEeeCceeccHHHHHHHHHhCCceEEeecccCCHHHHHHhcCccccCHHHHHHHHHHHHh---CCCCEEEeeeec
Confidence 5543322 211111789999999999999999998776 66666653 35888899999999988 455443333333
Q ss_pred cCCCHHHHHHHHHHHHHcCC----cEEeeecCCCCCCCC-CC-ccccCCHHHH-HHHHHHHHHhhhh
Q 017200 285 CGETPDQVVSTMEKVRAAGV----DVMTFGQYMRPSKRH-MP-VSEYITPEAF-ERYRALGMEMGFR 344 (375)
Q Consensus 285 lGET~ee~~etl~~Lrelgv----d~v~i~qYl~P~~~~-~~-v~~~v~pe~~-~~l~~~a~~~gf~ 344 (375)
.|-+|+|+...+.+.+++|. -.++| |-+.|.+.+ .| +.+-++-.+| ..|+++-.+.|..
T Consensus 266 PG~ND~E~~~iIe~A~~iGaGkk~p~lgi-Qkyipyk~GRkp~~~k~~~fkeFYrwLrelEketg~k 331 (414)
T COG2100 266 PGVNDDEMPKIIEWAREIGAGKKWPPLGI-QKYIPYKFGRKPVIAKVWPFKEFYRWLRELEKETGVK 331 (414)
T ss_pred CCcChHHHHHHHHHHHHhCCCCCCCCcce-EEeeeecccCCccccccCcHHHHHHHHHHHHHHhCCC
Confidence 47789999999999999986 24555 444453322 22 2333334555 4456777777876
No 122
>PRK14470 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=98.84 E-value=6.5e-07 Score=89.35 Aligned_cols=193 Identities=9% Similarity=0.012 Sum_probs=129.1
Q ss_pred eeeCCccCCCCcCCCCCCCCCCCCCCcchHHHHHHHHHhc---CCcEEEEEe-eeCCCCCcccHHHHHHHHHHHHHh---
Q 017200 133 MILGDTCTRGCRFCNVKTSRAPPPPDPDEPTNVAEAIASW---GLDYVVITS-VDRDDLADQGSGHFAQTVRKLKEL--- 205 (375)
Q Consensus 133 m~i~d~C~~~C~FC~v~~~r~~~~ld~eEi~~~a~al~~~---G~~eIvLTs-gdr~dl~d~G~~~~~~lir~Ik~~--- 205 (375)
+--+.||+.+|.||.-....-...++.+|+++.+..+.+. .++.||++| |..-.- .+.+.+.++.++..
T Consensus 101 vSsq~GC~l~C~fC~tg~~g~~r~l~~~EI~~qi~~~~~~~~~~i~nIvfmGmGEPllN----~d~v~~~i~~l~~~~~~ 176 (336)
T PRK14470 101 LSSQAGCALGCAFCATGKLGLDRSLRSWEIVAQLLAVRADSERPITGVVFMGQGEPFLN----YDEVLRAAYALCDPAGA 176 (336)
T ss_pred EeCCCCcCCCCccccCCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCEEEEEecCccccC----HHHHHHHHHHHhCcccc
Confidence 3347899999999998764322347888888877665443 589999999 753221 23466667777642
Q ss_pred -CCCcEEEeecCCCCCChHHHHHHHHcCc-ccccccccchH-HHHHHhcC--CCCCHHHHHHHHHHHHHhCCCCceEEEe
Q 017200 206 -KPNMLIEALVPDFRGNNGCVREVAKSGL-NVFAHNIETVE-ELQSAVRD--HRANFKQSLDVLMMAKDYVPAGTLTKTS 280 (375)
Q Consensus 206 -~p~i~Ie~l~pd~~g~~e~l~~L~~aGl-dv~~hnlEtv~-rl~~~mr~--r~~s~~~~l~vl~~ak~~~p~Gl~tkt~ 280 (375)
.+..+|.+.+-. ....+..+.+.++ +.++..+++.+ +.+.++.| ++++.++.++.++...+.. .-+.+.--
T Consensus 177 ~~~~~~ItVsTnG---~~p~i~~l~~~~~~~~LaiSLhA~~~e~r~~I~p~~~~~~le~il~ai~~~~~~~-rri~ieyv 252 (336)
T PRK14470 177 RIDGRRISISTAG---VVPMIRRYTAEGHKFRLCISLNAAIPWKRRALMPIEQGFPLDELVEAIREHAALR-GRVTLEYV 252 (336)
T ss_pred ccCCCceEEEecC---ChHHHHHHHhcCCCceEEEecCCCCHHHHHHhcCccccCCHHHHHHHHHHHHHhC-CCeEEEEE
Confidence 134566666533 2346677777776 66777788764 88888874 3578999999998888752 22455666
Q ss_pred EEEecCCCHHHHHHHHHHHHHcCCcEEeeecCCCCCCCCCCccccCCHHHHHHHHHHH
Q 017200 281 IMLGCGETPDQVVSTMEKVRAAGVDVMTFGQYMRPSKRHMPVSEYITPEAFERYRALG 338 (375)
Q Consensus 281 imvGlGET~ee~~etl~~Lrelgvd~v~i~qYl~P~~~~~~v~~~v~pe~~~~l~~~a 338 (375)
+|-|+..++||+.+..++++.+.+.+ .+-+|..|. . .+ +..+.++.+.+.++-
T Consensus 253 LI~GvNDseeda~~La~llk~l~~~v-nlI~~N~~~-~--~~-~~p~~~~i~~f~~~l 305 (336)
T PRK14470 253 MISGVNVGEEDAAALGRLLAGIPVRL-NPIAVNDAT-G--RY-RPPDEDEWNAFRDAL 305 (336)
T ss_pred EEecccCCHHHHHHHHHHHhcCCCeE-EEeccCCCC-C--Cc-cCCCHHHHHHHHHHH
Confidence 77788999999999999999887644 333664332 1 22 223455666666665
No 123
>PRK14459 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=98.84 E-value=6.9e-07 Score=90.21 Aligned_cols=201 Identities=15% Similarity=0.153 Sum_probs=131.8
Q ss_pred eCCccCCCCcCCCCCCCCCCCCCCcchHHHHHHHHHh---c------C--CcEEEEEe-eeCCCCCcccHHHHHHHHHHH
Q 017200 135 LGDTCTRGCRFCNVKTSRAPPPPDPDEPTNVAEAIAS---W------G--LDYVVITS-VDRDDLADQGSGHFAQTVRKL 202 (375)
Q Consensus 135 i~d~C~~~C~FC~v~~~r~~~~ld~eEi~~~a~al~~---~------G--~~eIvLTs-gdr~dl~d~G~~~~~~lir~I 202 (375)
.+.||+.+|.||+-....-...++++||+..+..+.+ . | ++.||+.| |+.-. ..+.+.+.++.|
T Consensus 127 sQvGC~m~C~FCatg~~g~~RnLt~~EIv~Qv~~~~~~~~~~~~~~~~~~i~nVvfmGmGEPLl----N~d~V~~~i~~l 202 (373)
T PRK14459 127 SQAGCGMACPFCATGQGGLTRNLSTAEIVEQVRAAARALRDGEVPGGPGRLSNVVFMGMGEPLA----NYKRVVAAVRRI 202 (373)
T ss_pred ecCCCCCcCCCCCCCCCCCCCccCHHHHHHHHHHHHHHhhhcccccCCCceeEEEEecCCcchh----hHHHHHHHHHHH
Confidence 4789999999998654321234899999998876652 1 2 67899999 65321 145567777777
Q ss_pred HHhCC---Cc---EEEeecCCCCCChHHHHHHHHcCcc-cccccccchH-HHHHHhcC--CCCCHHHHHHHHHHHHHhCC
Q 017200 203 KELKP---NM---LIEALVPDFRGNNGCVREVAKSGLN-VFAHNIETVE-ELQSAVRD--HRANFKQSLDVLMMAKDYVP 272 (375)
Q Consensus 203 k~~~p---~i---~Ie~l~pd~~g~~e~l~~L~~aGld-v~~hnlEtv~-rl~~~mr~--r~~s~~~~l~vl~~ak~~~p 272 (375)
++..| ++ +|.+.+-. -...+..|.+.+++ .++..+.+.+ ++++++-| ++++.++-++.++...+...
T Consensus 203 ~~~~~~g~gis~r~ITvST~G---l~~~i~~la~~~l~~~LavSLha~d~e~R~~l~p~n~~~~l~~ll~a~~~~~~~~g 279 (373)
T PRK14459 203 TAPAPEGLGISARNVTVSTVG---LVPAIRKLADEGLPVTLAVSLHAPDDELRDELVPVNTRWKVDEVLDAARYYADATG 279 (373)
T ss_pred hCcccccCCccCCEEEEECcC---chhHHHHHHHhcCCeEEEEEeCCCCHHHHHHhcCcccCCCHHHHHHHHHHHHHHhC
Confidence 65211 23 55555432 24568889998887 5666677664 99999885 46888888888766654221
Q ss_pred CCceEEEeEEEecCCCHHHHHHHHHHHHHcC--CcEEeeecCCCCCCCCCCccccCCHHHHHHHHHHHHHhhhhh
Q 017200 273 AGTLTKTSIMLGCGETPDQVVSTMEKVRAAG--VDVMTFGQYMRPSKRHMPVSEYITPEAFERYRALGMEMGFRY 345 (375)
Q Consensus 273 ~Gl~tkt~imvGlGET~ee~~etl~~Lrelg--vd~v~i~qYl~P~~~~~~v~~~v~pe~~~~l~~~a~~~gf~~ 345 (375)
.-+.+.--+|=|+-.++||..+..+.++.++ ...|.+-+|. |.. ..+. +....+..+.+.++-.+.|+..
T Consensus 280 rrv~ieyvLi~GvNDs~e~a~~L~~llk~~~~~~~~VNLIpyN-p~~-~~~y-~~~~~~~~~~F~~~L~~~gi~~ 351 (373)
T PRK14459 280 RRVSIEYALIRDINDQPWRADLLGKKLHGRGGGWVHVNLIPLN-PTP-GSKW-TASPPEVEREFVRRLRAAGVPC 351 (373)
T ss_pred CEEEEEEEEeCCCCCCHHHHHHHHHHHhhccCCCeEEEEEccC-CCC-CCCC-cCCCHHHHHHHHHHHHHCCCeE
Confidence 1134455566688999999999999999884 3456676664 421 1221 1233456667777767777654
No 124
>TIGR00048 radical SAM enzyme, Cfr family. A Staphylococcus sciuri plasmid-borne member of this family, Cfr, has been identified as essential to transferrable resistance to chloramphenicol and florfenicol by an unknown mechanism. A 14-15 residue cluster with four perfectly conserved Cys residues suggests this protein may be an enzyme with an iron-sulfur cluster. The Cys cluster is part of the radical SAM domain, suggested to provide a general mechanism by which the Fe-S center cleaves S-adenosylmethionine to initiate radical-based catalysis. Members of this family lack apparent transmembrane domains.
Probab=98.83 E-value=5.2e-07 Score=90.66 Aligned_cols=203 Identities=13% Similarity=0.148 Sum_probs=130.2
Q ss_pred eeeCCccCCCCcCCCCCCCCCCCCCCcchHHHHHHHHHh------cCCcEEEEEe-eeCCCCCcccHHHHHHHHHHHHHh
Q 017200 133 MILGDTCTRGCRFCNVKTSRAPPPPDPDEPTNVAEAIAS------WGLDYVVITS-VDRDDLADQGSGHFAQTVRKLKEL 205 (375)
Q Consensus 133 m~i~d~C~~~C~FC~v~~~r~~~~ld~eEi~~~a~al~~------~G~~eIvLTs-gdr~dl~d~G~~~~~~lir~Ik~~ 205 (375)
+.-+.||+.+|.||+.........++.+|+++.+..+.. .+++.|++.| |+.- +- .+.+.+.++.+++.
T Consensus 109 VSsQ~GC~l~C~fC~t~~~g~~r~lt~~Eiv~qv~~~~~~~~~~~~~v~nVvfmGmGEPL-ln---~d~v~~~l~~l~~~ 184 (355)
T TIGR00048 109 VSSQVGCALGCTFCATAKGGFNRNLEASEIIGQVLRVQKINNETGERVSNVVFMGMGEPL-LN---LNEVVKAMEIMNDD 184 (355)
T ss_pred EecCCCCCCcCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhhhcCCCeeEEEEecCCchh-hC---HHHHHHHHHHhhcc
Confidence 334679999999999765432234889999987765432 3578899999 5431 11 34566777777643
Q ss_pred CC-Cc---EEEeecCCCCCChHHHHHHHHcCccc-ccccccchH-HHHHHhcC--CCCCHHHHHHHHHHHHHhCCCCceE
Q 017200 206 KP-NM---LIEALVPDFRGNNGCVREVAKSGLNV-FAHNIETVE-ELQSAVRD--HRANFKQSLDVLMMAKDYVPAGTLT 277 (375)
Q Consensus 206 ~p-~i---~Ie~l~pd~~g~~e~l~~L~~aGldv-~~hnlEtv~-rl~~~mr~--r~~s~~~~l~vl~~ak~~~p~Gl~t 277 (375)
.. ++ ++.+.+-. ..+.+..|.+.++++ +...+...+ +.++++.| +++++++-++.++...+..+.-+.+
T Consensus 185 ~g~~i~~~~itisT~G---~~~~i~~l~~~~l~~~LaiSL~a~~~e~r~~l~p~~~~~~l~~ll~~l~~~~~~~g~~Vti 261 (355)
T TIGR00048 185 FGLGISKRRITISTSG---VVPKIDILADKMLQVALAISLHAPNDELRSSLMPINKKYNIETLLAAVRRYLNKTGRRVTF 261 (355)
T ss_pred cccCcCCCeEEEECCC---chHHHHHHHHhCCCcEEEEEeCCCCHHHHHHhcCcccCCCHHHHHHHHHHHHHHhCCEEEE
Confidence 21 23 55555433 346788898888884 566677654 88888753 4677888887776543322222444
Q ss_pred EEeEEEecCCCHHHHHHHHHHHHHcCCcEEeeecCCCCCCCCCCccccCCHHHHHHHHHHHHHhhhhhh
Q 017200 278 KTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQYMRPSKRHMPVSEYITPEAFERYRALGMEMGFRYV 346 (375)
Q Consensus 278 kt~imvGlGET~ee~~etl~~Lrelgvd~v~i~qYl~P~~~~~~v~~~v~pe~~~~l~~~a~~~gf~~~ 346 (375)
..-+|=|+-.++||+.+..++++.+++ .|.+.+|- |.. ..+.. ...+++.+.+.++-.+.|+...
T Consensus 262 eyvLI~GvNDs~e~a~~La~llk~l~~-~VnLIPyn-p~~-~~~~~-~ps~e~i~~f~~~L~~~gi~v~ 326 (355)
T TIGR00048 262 EYVLLDGVNDQVEHAEELAELLKGTKC-KVNLIPWN-PFP-EADYE-RPSNEQIDRFAKTLMSYGFTVT 326 (355)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcCCC-ceEEEecc-cCC-CCCCC-CCCHHHHHHHHHHHHHCCCeEE
Confidence 555555888999999999999999875 34444442 311 11221 2356777778877777787654
No 125
>PRK14453 chloramphenicol/florfenicol resistance protein; Provisional
Probab=98.75 E-value=7.6e-07 Score=89.23 Aligned_cols=203 Identities=11% Similarity=0.105 Sum_probs=127.1
Q ss_pred eeCCccCCCCcCCCCCCCCCCCCCCcchHHHHHHHHHhcC--CcEEEEEe-eeCCCCCcccHHHHHHHHHHHHHhC-CC-
Q 017200 134 ILGDTCTRGCRFCNVKTSRAPPPPDPDEPTNVAEAIASWG--LDYVVITS-VDRDDLADQGSGHFAQTVRKLKELK-PN- 208 (375)
Q Consensus 134 ~i~d~C~~~C~FC~v~~~r~~~~ld~eEi~~~a~al~~~G--~~eIvLTs-gdr~dl~d~G~~~~~~lir~Ik~~~-p~- 208 (375)
.-+.||+.+|.||+.....-...++.+||++.+..+...| ++.|+++| |+.-... .+.+.|+.|++.. .+
T Consensus 105 ssqvGC~~~C~FC~tg~~g~~rnLt~~EIv~qv~~~~~~~~~i~~IvfmGmGEPLln~-----~v~~~i~~l~~~~~~~~ 179 (347)
T PRK14453 105 SSQCGCGFGCRFCATGSIGLKRNLTADEITDQLLYFYLNGHRLDSISFMGMGEALANP-----ELFDALKILTDPNLFGL 179 (347)
T ss_pred ecCCCcCCCCCCCCCCCCCCcccCCHHHHHHHHHHHHhcCCCcceEEEeecCCccCCH-----HHHHHHHHHhcccccCC
Confidence 3478999999999988643233589999999988776665 89999999 7643221 2666666666521 11
Q ss_pred --cEEEeecCCCCCChHHHHHHHHcCcccccc--cccch-HHHHHHhcC--CCCCHHHHHHHHHHHHHhCCCCceEEEeE
Q 017200 209 --MLIEALVPDFRGNNGCVREVAKSGLNVFAH--NIETV-EELQSAVRD--HRANFKQSLDVLMMAKDYVPAGTLTKTSI 281 (375)
Q Consensus 209 --i~Ie~l~pd~~g~~e~l~~L~~aGldv~~h--nlEtv-~rl~~~mr~--r~~s~~~~l~vl~~ak~~~p~Gl~tkt~i 281 (375)
-+|.+.+-.+. ..++.+.+.... +.. .+.+. ++...++.+ +++..++-++.++........-+.+..-+
T Consensus 180 ~~r~itVsT~G~~---~~i~~l~~~~~~-v~LalSLha~dd~~r~~l~pi~~~~~L~~ll~~~~~~l~~~~~~V~iry~L 255 (347)
T PRK14453 180 SQRRITISTIGII---PGIQRLTQEFPQ-VNLTFSLHSPFESQRSELMPINKRFPLNEVMKTLDEHIRHTGRKVYIAYIM 255 (347)
T ss_pred CCCcEEEECCCCc---hhHHHHHhhccC-cCEEEEecCCCHHHHHHhcCccccccHHHHHHHHHHHHHhcCCcEEEEEEe
Confidence 23454443332 224444443222 222 33333 355665553 45666666665555444222226678888
Q ss_pred EEecCCCHHHHHHHHHHHHHcC----CcEEeeecCCCCCCCCCCccccCCHHHHHHHHHHHHHhhhhhh
Q 017200 282 MLGCGETPDQVVSTMEKVRAAG----VDVMTFGQYMRPSKRHMPVSEYITPEAFERYRALGMEMGFRYV 346 (375)
Q Consensus 282 mvGlGET~ee~~etl~~Lrelg----vd~v~i~qYl~P~~~~~~v~~~v~pe~~~~l~~~a~~~gf~~~ 346 (375)
|=|+-.++||+.+..++++.++ +..|.+-+|. |......-.+....++.+.+.++..+.|+...
T Consensus 256 I~GvNDs~e~a~~L~~~lk~l~~~~~~~~VnLIPyn-~~~~~~~~~~~ps~e~v~~f~~~L~~~Gi~vt 323 (347)
T PRK14453 256 LEGVNDSKEHAEAVVGLLRNRGSWEHLYHVNLIPYN-STDKTPFKFQSSSAGQIKQFCSTLKSAGISVT 323 (347)
T ss_pred ECCCCCCHHHHHHHHHHHhhccccCCcceEEEecCC-CCCCCCccCCCCCHHHHHHHHHHHHHCCCcEE
Confidence 8899999999999999999884 4567776664 32211111233456778888888888887543
No 126
>TIGR03820 lys_2_3_AblA lysine-2,3-aminomutase. This model describes lysine-2,3-aminomutase as found along with beta-lysine acetyltransferase in a two-enzyme pathway for making the compatible solute N-epsilon-acetyl-beta-lysine. This compatible solute, or osmolyte, is known to protect a number of methanogenic archaea against salt stress. The trusted cutoff distinguishes a tight clade with essentially full-length homology from additional homologs that are shorter or highly diverged in the C-terminal region. All members of this family have the radical SAM motif CXXXCXXC, while some but not all have a second copy of the motif in the C-terminal region.
Probab=98.73 E-value=6.7e-07 Score=91.37 Aligned_cols=181 Identities=19% Similarity=0.237 Sum_probs=120.6
Q ss_pred hhhhhhhcCCCCcccccCCCCCCccEEEEeeeCCccCCCCcCCCCCCCCC--CCCCCcchHHHHHHHHHh-cCCcEEEEE
Q 017200 104 LHTVCEEAKCPNLGECWSGGETGTATATIMILGDTCTRGCRFCNVKTSRA--PPPPDPDEPTNVAEAIAS-WGLDYVVIT 180 (375)
Q Consensus 104 L~tvceeA~cpn~~ec~~~~~~~~~tatfm~i~d~C~~~C~FC~v~~~r~--~~~ld~eEi~~~a~al~~-~G~~eIvLT 180 (375)
..-++|+...|--+- -|-+.....+.+++.|+..|+||..+...+ ...++.+++.+.++.+++ .++++|.||
T Consensus 88 ~Dpl~E~~~spvpGl-----~HrYp~rvLl~vT~~C~~~CryC~R~~~~g~~~~~ls~eei~~~i~yI~~~p~I~~VlLS 162 (417)
T TIGR03820 88 EDPLAEDEDSPVPGI-----THRYPDRVLFLVSNTCAMYCRHCTRKRKVGDRDSIPSKEQILEGIEYIRNTPQIRDVLLS 162 (417)
T ss_pred cCcccccccCCCCCc-----eeccCCEEEEEEcCCcCCCCcCCCCcccCCcccccCCHHHHHHHHHHHHhcCCCCEEEEe
Confidence 345666655553321 111234555667999999999998765211 224788999998888887 499999999
Q ss_pred eeeCCCCCcccHHHHHHHHHHHHHhCCCc---EEEeecCCCC---CChHHHHHHHHcCcccccccccchHHHHHHhcCCC
Q 017200 181 SVDRDDLADQGSGHFAQTVRKLKELKPNM---LIEALVPDFR---GNNGCVREVAKSGLNVFAHNIETVEELQSAVRDHR 254 (375)
Q Consensus 181 sgdr~dl~d~G~~~~~~lir~Ik~~~p~i---~Ie~l~pd~~---g~~e~l~~L~~aGldv~~hnlEtv~rl~~~mr~r~ 254 (375)
|||---++| ..+..+++.|++ .|++ +|..-+|.+. -+.+.++.|++.+...+...+...+++
T Consensus 163 GGDPLll~d---~~L~~iL~~L~~-IphV~~IRI~TR~pvv~P~RIT~ell~~Lk~~~~~~v~~h~nhp~Ei-------- 230 (417)
T TIGR03820 163 GGDPLLLSD---DYLDWILTELRA-IPHVEVIRIGTRVPVVLPQRITDELVAILKKHHPVWLNTHFNHPREI-------- 230 (417)
T ss_pred CCccccCCh---HHHHHHHHHHhh-cCCCceEEEeeccccccccccCHHHHHHHHhcCCeEEEEeCCChHhC--------
Confidence 998655554 334445666665 3554 3443333322 168899999999865554333333343
Q ss_pred CCHHHHHHHHHHHHHhCCCCceE--EEeEEEecCCCHHHHHHHHHHHHHcCCcE
Q 017200 255 ANFKQSLDVLMMAKDYVPAGTLT--KTSIMLGCGETPDQVVSTMEKVRAAGVDV 306 (375)
Q Consensus 255 ~s~~~~l~vl~~ak~~~p~Gl~t--kt~imvGlGET~ee~~etl~~Lrelgvd~ 306 (375)
.++..+.++.+++ .|+.+ -|-++=|...+.+-+.++++.|-+++|.-
T Consensus 231 --t~~a~~Al~~L~~---aGI~l~nQsVLLkGVND~~~~l~~L~~~L~~~gV~P 279 (417)
T TIGR03820 231 --TASSKKALAKLAD---AGIPLGNQSVLLAGVNDCPRIMKKLVHKLVANRVRP 279 (417)
T ss_pred --hHHHHHHHHHHHH---cCCEEEeeceEECCcCCCHHHHHHHHHHHHHCCCee
Confidence 4666788888888 57654 56777788888888999999999999753
No 127
>COG1243 ELP3 Histone acetyltransferase [Transcription / Chromatin structure and dynamics]
Probab=98.70 E-value=1.2e-06 Score=89.38 Aligned_cols=197 Identities=16% Similarity=0.290 Sum_probs=139.8
Q ss_pred HHHHHHHHhccChhhhhhhcCCCCcccccCCCCCCccEEEEeeeCCccCC-CCcCCCCC------CCC---CCCC-----
Q 017200 92 YVQIKKKLRELKLHTVCEEAKCPNLGECWSGGETGTATATIMILGDTCTR-GCRFCNVK------TSR---APPP----- 156 (375)
Q Consensus 92 ~~~~~~~l~~~~L~tvceeA~cpn~~ec~~~~~~~~~tatfm~i~d~C~~-~C~FC~v~------~~r---~~~~----- 156 (375)
..+++.+|+..-..|. +| -+.++.|.--.+|+. .|-||... ++. .|..
T Consensus 47 ~~~l~~~lr~KPvRt~-------------sg----vaVVaVmt~p~~CPHg~CvfCpgg~~~~spQSytg~ep~~~R~~~ 109 (515)
T COG1243 47 EERLREILRRKPVRTI-------------SG----VAVVAVMTSPHGCPHGRCVFCPGGPDKDSPQSYTGEEPAALRAIK 109 (515)
T ss_pred HHHHHHHHhhcCcccc-------------cc----ceEEEEecCCCCCCCCeEEeCCCCCCCCCCcccCCCCchhhhHhh
Confidence 3447777776544433 11 345555655679997 99999877 221 1211
Q ss_pred --CC-cchHHHHHHHHHhcCC---c-EEEEEeeeCCCCCcccHHHHHHHH-HHHH----------HhC--CCcE---EEe
Q 017200 157 --PD-PDEPTNVAEAIASWGL---D-YVVITSVDRDDLADQGSGHFAQTV-RKLK----------ELK--PNML---IEA 213 (375)
Q Consensus 157 --ld-~eEi~~~a~al~~~G~---~-eIvLTsgdr~dl~d~G~~~~~~li-r~Ik----------~~~--p~i~---Ie~ 213 (375)
.| ..+....++++...|- + ++.|-||+=..++-.--++|...+ +++- ..+ ...+ |.+
T Consensus 110 ~~ydpY~q~~~Rl~qL~~igh~~~KvEliimGGTFta~~~~yqe~Fi~~~~~amn~f~~~le~a~~~ne~~~~r~vgiti 189 (515)
T COG1243 110 NRYDPYEQVRARLKQLETIGHTSDKVELIIMGGTFTALSLEYQEWFLKVALKAMNDFGYDLEEAQRKNETAELRCVGITI 189 (515)
T ss_pred ccCCcHHHHHHHHHHHHHcCCCcceEEEEEecccccCCCHHHHHHHHHHHHHhhhccchhHHHHHHhhcccccceeEEEE
Confidence 22 3566677888888885 3 888999976555432233444333 2222 111 1122 222
Q ss_pred -ecCCCCCChHHHHHHHHcCcccccccccch-HHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEec-CCCHH
Q 017200 214 -LVPDFRGNNGCVREVAKSGLNVFAHNIETV-EELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGC-GETPD 290 (375)
Q Consensus 214 -l~pd~~g~~e~l~~L~~aGldv~~hnlEtv-~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~tkt~imvGl-GET~e 290 (375)
--||+. +++.+..|+..|++.+..++++. +++++++. |+|+.++..+.-+.+|+ .|+.+..+||.|| |-+.|
T Consensus 190 ETRPD~~-~ee~ld~mlkyG~TrVELGVQSiyd~Vl~~~~-RGHtvedv~~a~rLlKd---~GfKv~~HiMpGLPgs~~e 264 (515)
T COG1243 190 ETRPDYI-DEEHLDQMLKYGVTRVELGVQSIYDDVLERTK-RGHTVEDVVEATRLLKD---AGFKVGYHIMPGLPGSDFE 264 (515)
T ss_pred ecCcccc-CHHHHHHHHhcCCcEEEEeeeeHHHHHHHHhc-CCccHHHHHHHHHHHHh---cCcEEEEEecCCCCCCChH
Confidence 237876 78999999999999999999987 59999999 99999999999999999 6899999999999 98888
Q ss_pred HHHHHHHHHHHcC---CcEEeee
Q 017200 291 QVVSTMEKVRAAG---VDVMTFG 310 (375)
Q Consensus 291 e~~etl~~Lrelg---vd~v~i~ 310 (375)
-=+++.+.+-+.+ +|++.|-
T Consensus 265 rDl~~f~~~f~~p~f~PDmlKIY 287 (515)
T COG1243 265 RDLESFREIFEDPRFRPDMLKIY 287 (515)
T ss_pred HHHHHHHHHHhCCCCCCCeEEEe
Confidence 8888888888888 8999885
No 128
>COG4277 Predicted DNA-binding protein with the Helix-hairpin-helix motif [General function prediction only]
Probab=98.68 E-value=3.3e-07 Score=88.82 Aligned_cols=170 Identities=16% Similarity=0.316 Sum_probs=113.6
Q ss_pred eeCCccCCCCcCCCCCCCCC-CC-CCCcchHHHHHHHHHhcC-CcEEEEEeee--CCCCCcccHHHHHHHHHHHHHhC--
Q 017200 134 ILGDTCTRGCRFCNVKTSRA-PP-PPDPDEPTNVAEAIASWG-LDYVVITSVD--RDDLADQGSGHFAQTVRKLKELK-- 206 (375)
Q Consensus 134 ~i~d~C~~~C~FC~v~~~r~-~~-~ld~eEi~~~a~al~~~G-~~eIvLTsgd--r~dl~d~G~~~~~~lir~Ik~~~-- 206 (375)
+++|.|..+|+||.-..+.. |. .++++|+++..-...+.. +.-..|.||. .+|+. .+.+.++.+.++-..
T Consensus 59 LlTN~CiyDC~YCINr~s~~~pra~ftp~Eiv~ltlnfYrRnYIeGLFLSSGvi~~~DyT---mE~mi~var~LRle~~f 135 (404)
T COG4277 59 LLTNFCIYDCAYCINRSSNDTPRARFTPEEIVDLTLNFYRRNYIEGLFLSSGVIKNPDYT---MEEMIEVARILRLEHKF 135 (404)
T ss_pred HHhhhHHHhhHHHhccccCCCcccccCHHHHHHHHHHHHHHhhhhhheeccccccCcchH---HHHHHHHHHHHhhcccc
Confidence 47999999999998866543 42 489999999876665554 4677788874 34443 566677777765322
Q ss_pred -CCcEEEeecCCCCCChHHHHHHHHcCcccccccccch-HHHHHHhcCCCCCHHHHHHHHHHHHH---------------
Q 017200 207 -PNMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETV-EELQSAVRDHRANFKQSLDVLMMAKD--------------- 269 (375)
Q Consensus 207 -p~i~Ie~l~pd~~g~~e~l~~L~~aGldv~~hnlEtv-~rl~~~mr~r~~s~~~~l~vl~~ak~--------------- 269 (375)
.-|++. ++|.- +++.+++.-.. +|.+..|||+. ++-++.+.| ..++.+.+.-+..++.
T Consensus 136 ~GYIHlK-~IPga--s~~li~eagly-adRvSiNIElp~~~~lk~lap-~K~p~dI~r~Mg~ir~~i~e~~e~~~r~r~t 210 (404)
T COG4277 136 RGYIHLK-IIPGA--SPDLIKEAGLY-ADRVSINIELPTDDGLKLLAP-EKDPTDILRSMGWIRLKILENAEDKRRKRHT 210 (404)
T ss_pred CcEEEEE-ecCCC--CHHHHHHHhhh-hheeEEeEecCCcchhhhhCC-CCChHHHHHHHHHHHHHHhhcccchhhhccC
Confidence 225555 44543 66666665443 58899999975 355666663 4445544444444333
Q ss_pred --hCCCCceEEEeEEEec-CCCHHHHHHHHHHHHH-cCCcEEeeecCC
Q 017200 270 --YVPAGTLTKTSIMLGC-GETPDQVVSTMEKVRA-AGVDVMTFGQYM 313 (375)
Q Consensus 270 --~~p~Gl~tkt~imvGl-GET~ee~~etl~~Lre-lgvd~v~i~qYl 313 (375)
..|.| -.|.||||- ||||++++..-..|.. .+...|-+..|+
T Consensus 211 p~fapaG--QSTQmivGA~~~tD~~Ilsrs~~ly~~y~lkRVyySaf~ 256 (404)
T COG4277 211 PEFAPAG--QSTQMIVGADGETDEDILSRSENLYGRYSLKRVYYSAFS 256 (404)
T ss_pred ccccCCC--CceEEEEecCCCchHHHHHHHHHHhhccceeEEEeeccc
Confidence 23445 478999999 9999999998888775 466677776564
No 129
>COG1180 PflA Pyruvate-formate lyase-activating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=98.62 E-value=5.9e-06 Score=79.73 Aligned_cols=206 Identities=16% Similarity=0.198 Sum_probs=135.8
Q ss_pred EEEEeeeCCccCCCCcCCCCCCCCC---CCC---CCcchHHHHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHH
Q 017200 129 TATIMILGDTCTRGCRFCNVKTSRA---PPP---PDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKL 202 (375)
Q Consensus 129 tatfm~i~d~C~~~C~FC~v~~~r~---~~~---ld~eEi~~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~I 202 (375)
...+.+..-||+.+|.||.=+.... +.. ++++++.+.+ ....+++-|++|||+-- +- .+.+.++++..
T Consensus 35 ~~~~~vf~~GCnlrC~~C~N~~~~~~~~~~~~~~~~~e~l~~~~--~~~~~~~gvt~SGGEP~-~q---~e~~~~~~~~a 108 (260)
T COG1180 35 SIRLSVFLQGCNLRCPYCQNPEISQRGREVSGEEVSPEVLVDKA--FYSESGGGVTFSGGEPT-LQ---AEFALDLLRAA 108 (260)
T ss_pred cEEEEEEeCCCCCCCCCCCChhHhcccccCchhhcCHHHHHHHh--hhcCCCCEEEEECCcch-hh---HHHHHHHHHHH
Confidence 3445556679999999998765321 111 3333333322 23347899999999742 21 56778888888
Q ss_pred HHhCCCcEEEeecCCCCCChHHHHHHHHcCcccccccccc-hHHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeE
Q 017200 203 KELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIET-VEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSI 281 (375)
Q Consensus 203 k~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGldv~~hnlEt-v~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~tkt~i 281 (375)
|+. ++.+.+-+-.|. ..+.++.|.+. +|.+..-+=. .+++|+.+. +++-+..++.++.+++.... +.+++-+
T Consensus 109 ke~--Gl~~~l~TnG~~-~~~~~~~l~~~-~D~v~~DlK~~~~~~y~~~t--g~~~~~vl~~~~~l~~~g~~-ve~r~lv 181 (260)
T COG1180 109 KER--GLHVALDTNGFL-PPEALEELLPL-LDAVLLDLKAFDDELYRKLT--GADNEPVLENLELLADLGVH-VEIRTLV 181 (260)
T ss_pred HHC--CCcEEEEcCCCC-CHHHHHHHHhh-cCeEEEeeccCChHHHHHHh--CCCcHHHHHHHHHHHcCCCe-EEEEEEE
Confidence 876 677766555443 56667778776 6766554433 357788888 45558899999999884222 3456666
Q ss_pred EEecCCCHHHHHHHHHHHHHcCC-cEEeeecCCCCCCCCCCccccCCHHHHHHHHHHHHHhhhhhhccc
Q 017200 282 MLGCGETPDQVVSTMEKVRAAGV-DVMTFGQYMRPSKRHMPVSEYITPEAFERYRALGMEMGFRYVASG 349 (375)
Q Consensus 282 mvGlGET~ee~~etl~~Lrelgv-d~v~i~qYl~P~~~~~~v~~~v~pe~~~~l~~~a~~~gf~~~~sg 349 (375)
+=|+...++|+.+..+++.+++. .-+.+.+|.++.. +.....-..+..+...+++.+.|..++..|
T Consensus 182 iPg~~d~~e~i~~i~~~i~~~~~~~p~~~l~fhp~~~--~~~~p~~~~~~le~~~~~a~~~~~~~v~~~ 248 (260)
T COG1180 182 IPGYNDDEEEIRELAEFIADLGPEIPIHLLRFHPDYK--LKDLPPTPVETLEEAKKLAKEEGLKFVYIG 248 (260)
T ss_pred ECCCCCCHHHHHHHHHHHHhcCCcccEEEeccccCcc--ccccCCCcHHHHHHhHhhhHHHHHHhHhhh
Confidence 66778899999999999998653 3466656643322 222122235678888899999888887654
No 130
>PRK14467 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=98.61 E-value=8.8e-06 Score=81.67 Aligned_cols=202 Identities=11% Similarity=0.170 Sum_probs=125.7
Q ss_pred EeeeCCccCCCCcCCCCCCCCCCCCCCcchHHHHHHHHHh----cCCcEEEEEe-eeCCCCCcccHHHHHHHHHHHHHhC
Q 017200 132 IMILGDTCTRGCRFCNVKTSRAPPPPDPDEPTNVAEAIAS----WGLDYVVITS-VDRDDLADQGSGHFAQTVRKLKELK 206 (375)
Q Consensus 132 fm~i~d~C~~~C~FC~v~~~r~~~~ld~eEi~~~a~al~~----~G~~eIvLTs-gdr~dl~d~G~~~~~~lir~Ik~~~ 206 (375)
.+.-+.||+.+|.||+-+...-...++.+|+++.+..+.. .++..||+.| |+.-. ..+.+.+.++.++...
T Consensus 102 cvSsq~GC~l~C~FC~t~~~G~~rnlt~~EIv~Qv~~~~~~~~~~~v~~VvfmGmGEPL~----N~d~v~~~l~~l~~~~ 177 (348)
T PRK14467 102 CVSSQVGCAVGCKFCATAKDGLIRNLRTAEIIDQYIQVQKFLGENRIRNVVFMGMGEPLA----NYENVRKAVQIMTSPW 177 (348)
T ss_pred EEEcCCCCCCcCcCCCCCCCCCcCCCCHHHHHHHHHHHHHHhccCCCCeEEEEccChhhc----CHHHHHHHHHHHcChh
Confidence 3446899999999998765321235899999988876654 3589999999 65321 1456677777776422
Q ss_pred CCc-----EEEeecCCCCCChHHHHHHHHcC----cccccccccch-HHHHHHhcCC--CCCHHHHHHHHHHHHHhCCCC
Q 017200 207 PNM-----LIEALVPDFRGNNGCVREVAKSG----LNVFAHNIETV-EELQSAVRDH--RANFKQSLDVLMMAKDYVPAG 274 (375)
Q Consensus 207 p~i-----~Ie~l~pd~~g~~e~l~~L~~aG----ldv~~hnlEtv-~rl~~~mr~r--~~s~~~~l~vl~~ak~~~p~G 274 (375)
++ ++.+.+-.+ ...+..+.... ++ +...+... ++.++++.|. ++.++.-++.++...+....-
T Consensus 178 -gl~~~~r~itvsT~G~---~~~i~~l~~~~~l~~v~-LalSLha~~~e~r~~i~p~~~~~~l~~l~~~~~~~~~~~g~~ 252 (348)
T PRK14467 178 -GLDLSKRRITISTSGI---IHQIKRMAEDPVMPEVN-LAVSLNASSQKLRERIMPISKTNTLEELMEVLKQYPLPPGRR 252 (348)
T ss_pred -ccCcCCCcEEEECCCC---hhHHHHHHhhccccCee-EEEECCCCCHHHHHHhcCCccccCHHHHHHHHHHHHHhcCCe
Confidence 23 555555433 23345554432 23 22445544 5888888852 356666666665443222111
Q ss_pred ceEEEeEEEecCCCHHHHHHHHHHHHHcC-CcEEeeecCCCCCCCCCCccccCCHHHHHHHHHHHHHhhhhh
Q 017200 275 TLTKTSIMLGCGETPDQVVSTMEKVRAAG-VDVMTFGQYMRPSKRHMPVSEYITPEAFERYRALGMEMGFRY 345 (375)
Q Consensus 275 l~tkt~imvGlGET~ee~~etl~~Lrelg-vd~v~i~qYl~P~~~~~~v~~~v~pe~~~~l~~~a~~~gf~~ 345 (375)
+.+.--+|=|+-.++|++.+..++++.++ +..|.+-+| .|.. ..+. +...+++.+.+.++..+.|+..
T Consensus 253 V~ieyvLIpGvNDs~e~a~~La~~l~~l~~~~~VnLIPy-np~~-~~~~-~~ps~e~i~~f~~~L~~~gi~v 321 (348)
T PRK14467 253 IMLEYVLIKGVNDSPEDALRLAQLIGKNKKKFKVNLIPF-NPDP-ELPY-ERPELERVYKFQKILWDNGIST 321 (348)
T ss_pred EEEEEEEECCccCCHHHHHHHHHHHhcCCCceEEEEecC-CCCC-CCCC-CCCCHHHHHHHHHHHHHCCCcE
Confidence 45566666688899999999999999985 455666555 2311 1222 2234667777888777777754
No 131
>COG2108 Uncharacterized conserved protein related to pyruvate formate-lyase activating enzyme [General function prediction only]
Probab=98.60 E-value=7.4e-07 Score=87.29 Aligned_cols=163 Identities=16% Similarity=0.274 Sum_probs=113.9
Q ss_pred EeeeCCccCCCCcCCCCCCCCC-CC-----CCCcchHHHHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHh
Q 017200 132 IMILGDTCTRGCRFCNVKTSRA-PP-----PPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKEL 205 (375)
Q Consensus 132 fm~i~d~C~~~C~FC~v~~~r~-~~-----~ld~eEi~~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~ 205 (375)
.+-+++.|+++|-||-++..|. .. ..+.....+..+.+.-++..-+-||||+.- +. .+...++++.+|..
T Consensus 31 VlFvTG~C~~~CfYCPvs~~r~gkdviyaNErpV~~~eDii~ea~~~~a~GasiTGGdPl-~~---ieR~~~~ir~LK~e 106 (353)
T COG2108 31 VLFVTGLCNRSCFYCPVSDERKGKDVIYANERPVKSVEDIIEEAKLMDALGASITGGDPL-LE---IERTVEYIRLLKDE 106 (353)
T ss_pred EEEEecccCCCcccCcCCHHhcCCcceeecccccCcHHHHHHHHHHhccccccccCCChH-HH---HHHHHHHHHHHHHh
Confidence 3445899999999999986432 11 134444455555555666677788998731 11 56788999999988
Q ss_pred C-CCcEEEeecCCCCCChHHHHHHHHcCcccccccccchHHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEE-
Q 017200 206 K-PNMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIML- 283 (375)
Q Consensus 206 ~-p~i~Ie~l~pd~~g~~e~l~~L~~aGldv~~hnlEtv~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~tkt~imv- 283 (375)
+ .+.+|++.+.....+.+.++.|.+||+|-+-.+.. ++.....+.+++.|..|++. |+.+ ++=+
T Consensus 107 fG~~fHiHLYT~g~~~~~e~l~~L~eAGLDEIRfHp~---------~~~~~~~e~~i~~l~~A~~~---g~dv--G~EiP 172 (353)
T COG2108 107 FGEDFHIHLYTTGILATEEALKALAEAGLDEIRFHPP---------RPGSKSSEKYIENLKIAKKY---GMDV--GVEIP 172 (353)
T ss_pred hccceeEEEeeccccCCHHHHHHHHhCCCCeEEecCC---------CccccccHHHHHHHHHHHHh---Cccc--eeecC
Confidence 7 56899998876666899999999999997765422 11123457889999999884 4322 2211
Q ss_pred ecCCCHHHHHHHHHHHHHcCCcEEeeecC
Q 017200 284 GCGETPDQVVSTMEKVRAAGVDVMTFGQY 312 (375)
Q Consensus 284 GlGET~ee~~etl~~Lrelgvd~v~i~qY 312 (375)
.+=.-++.+++..+.+.+.+.+++++.+.
T Consensus 173 aipg~e~~i~e~~~~~~~~~~~FlNiNEL 201 (353)
T COG2108 173 AIPGEEEAILEFAKALDENGLDFLNINEL 201 (353)
T ss_pred CCcchHHHHHHHHHHHHhcccceeeeeee
Confidence 22234677889999999999999998544
No 132
>COG1031 Uncharacterized Fe-S oxidoreductase [Energy production and conversion]
Probab=98.59 E-value=2.3e-06 Score=87.16 Aligned_cols=183 Identities=18% Similarity=0.294 Sum_probs=127.2
Q ss_pred EEEeeeCCccCCC----CcCCCCCCCCCCCCCCcchHHHHHHHHHhcCCcEEEEEeee------CCC----CCcccHHHH
Q 017200 130 ATIMILGDTCTRG----CRFCNVKTSRAPPPPDPDEPTNVAEAIASWGLDYVVITSVD------RDD----LADQGSGHF 195 (375)
Q Consensus 130 atfm~i~d~C~~~----C~FC~v~~~r~~~~ld~eEi~~~a~al~~~G~~eIvLTsgd------r~d----l~d~G~~~~ 195 (375)
..=|-...+|.+. |+||.=+....+...++|.++++++++.+.|+++..|-=+. .++ .|.-..+-+
T Consensus 184 i~EiETyRGC~r~~~ggCSFCtEp~~g~~~~R~~e~Vv~EVkaLY~~GvrhFRlGRQ~difsy~~~~~g~e~P~PnPeal 263 (560)
T COG1031 184 ICEIETYRGCPRRVSGGCSFCTEPVRGRPEFRPPEDVVEEVKALYRAGVRHFRLGRQADIFSYGADDNGGEVPRPNPEAL 263 (560)
T ss_pred EEEEeeccCCcccccCCCccccCcCcCCcccCCHHHHHHHHHHHHHhccceeeeccccceeeecccccCCCCCCCCHHHH
Confidence 3334567899987 99998776433445899999999999999999999875441 111 221125678
Q ss_pred HHHHHHHHHhCCCcEE---EeecCCCCC-----ChHHHHHHHHcC--cccccccccchH-HHHHHhcCCCCCHHHHHHHH
Q 017200 196 AQTVRKLKELKPNMLI---EALVPDFRG-----NNGCVREVAKSG--LNVFAHNIETVE-ELQSAVRDHRANFKQSLDVL 264 (375)
Q Consensus 196 ~~lir~Ik~~~p~i~I---e~l~pd~~g-----~~e~l~~L~~aG--ldv~~hnlEtv~-rl~~~mr~r~~s~~~~l~vl 264 (375)
.++.+.|+...|++.+ .-.-|.... +.+.++.+...| =|+.+.++||.| ++.+.=+ -..+.++.++.+
T Consensus 264 ekL~~Gir~~AP~l~tLHiDNaNP~tIa~yp~eSr~i~K~ivky~TpGnVaAfGlEsaDp~V~r~Nn-L~~spEEvl~AV 342 (560)
T COG1031 264 EKLFRGIRNVAPNLKTLHIDNANPATIARYPEESREIAKVIVKYGTPGNVAAFGLESADPRVARKNN-LNASPEEVLEAV 342 (560)
T ss_pred HHHHHHHHhhCCCCeeeeecCCCchhhhcChHHHHHHHHHHHhhCCCCceeeeeccccCHHHHhhcc-ccCCHHHHHHHH
Confidence 8889999998887643 112222111 244455554432 278888999987 6665544 689999999999
Q ss_pred HHHHHhCC----CCc---eEEEeEEEec-CCCHHHHHHHHHHHHHc---C--CcEEeeecCC
Q 017200 265 MMAKDYVP----AGT---LTKTSIMLGC-GETPDQVVSTMEKVRAA---G--VDVMTFGQYM 313 (375)
Q Consensus 265 ~~ak~~~p----~Gl---~tkt~imvGl-GET~ee~~etl~~Lrel---g--vd~v~i~qYl 313 (375)
+-+-++.. .|| .-..++++|| |||.|-+.-..++|+++ | +..|+|-|-+
T Consensus 343 ~ivn~vG~~rg~nGlP~lLPGINfv~GL~GEtkeT~~ln~efL~~ild~gllvRRINIRqV~ 404 (560)
T COG1031 343 EIVNEVGGGRGYNGLPYLLPGINFVFGLPGETKETYELNYEFLKEILDEGLLVRRINIRQVV 404 (560)
T ss_pred HHHHHhcCccCcCCCccccccceeEecCCCccHHHHHhhHHHHHHHHhcCceEEEeeeeeEe
Confidence 99988743 133 3478999999 99999999888888876 2 3456665553
No 133
>PRK13745 anaerobic sulfatase-maturase; Provisional
Probab=98.56 E-value=5.4e-06 Score=84.75 Aligned_cols=170 Identities=9% Similarity=0.128 Sum_probs=115.0
Q ss_pred eCCccCCCCcCCCCCCCC-----CC-CCCCcchHHHHHHHHHh-cCCcEE--EEEeeeCCCCCcccHHHHHHHHHHHHHh
Q 017200 135 LGDTCTRGCRFCNVKTSR-----AP-PPPDPDEPTNVAEAIAS-WGLDYV--VITSVDRDDLADQGSGHFAQTVRKLKEL 205 (375)
Q Consensus 135 i~d~C~~~C~FC~v~~~r-----~~-~~ld~eEi~~~a~al~~-~G~~eI--vLTsgdr~dl~d~G~~~~~~lir~Ik~~ 205 (375)
.++.|+.+|.||-..... .+ ..|+.+++.+.++.+.+ .|...+ .++||+. -+.. ...|.++++.+++.
T Consensus 20 ~~~~CNl~C~yC~~~~~~~~~~~~~~~~ms~e~~~~~i~~~~~~~~~~~v~i~f~GGEP-lL~~--~~~~~~~~~~~~~~ 96 (412)
T PRK13745 20 VGAVCNLACDYCYYLEKSKLYQENPKHVMSDELLEKFIKEYINSQTMPQVLFTWHGGET-LMRP--LSFYKKALELQKKY 96 (412)
T ss_pred cCCCcCCCCcccCCcCCCcccccCccCCCCHHHHHHHHHHHHHcCCCCeEEEEEEcccc-CCCc--HHHHHHHHHHHHHH
Confidence 457999999999985321 12 23899999988888775 466554 4478863 2221 23455555544432
Q ss_pred CC--CcEEEeecCCCCCChHHHHHHHHcCcccccccccchHHHHHHhcC---CCCCHHHHHHHHHHHHHhCCCCceEEEe
Q 017200 206 KP--NMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETVEELQSAVRD---HRANFKQSLDVLMMAKDYVPAGTLTKTS 280 (375)
Q Consensus 206 ~p--~i~Ie~l~pd~~g~~e~l~~L~~aGldv~~hnlEtv~rl~~~mr~---r~~s~~~~l~vl~~ak~~~p~Gl~tkt~ 280 (375)
.. ++.+.+.+-...-+++.++.+++.++ .+...+++.+++....|. .+.+|++.++.++.+++ .|+.+.
T Consensus 97 ~~~~~i~~~i~TNG~ll~~e~~~~l~~~~~-~v~ISlDG~~~~hD~~R~~~~g~gsf~~v~~~i~~l~~---~gi~~~-- 170 (412)
T PRK13745 97 ARGRQIDNCIQTNGTLLTDEWCEFFRENNF-LVGVSIDGPQEFHDEYRKNKMGKPSFVKVMKGINLLKK---HGVEWN-- 170 (412)
T ss_pred cCCCceEEEEeecCEeCCHHHHHHHHHcCe-EEEEEecCCHHHhhhhcCCCCCCccHHHHHHHHHHHHH---cCCCEE--
Confidence 22 34444444322226888999999986 788888887777777662 24689999999999998 465443
Q ss_pred EEEec-CCCHHHHHHHHHHHHHcCCcEEeeecCC
Q 017200 281 IMLGC-GETPDQVVSTMEKVRAAGVDVMTFGQYM 313 (375)
Q Consensus 281 imvGl-GET~ee~~etl~~Lrelgvd~v~i~qYl 313 (375)
++.=+ .++.++..+.+++++++|++.+.|.+++
T Consensus 171 i~~vv~~~n~~~~~e~~~~~~~lg~~~~~~~p~~ 204 (412)
T PRK13745 171 AMAVVNDFNADYPLDFYHFFKELDCHYIQFAPIV 204 (412)
T ss_pred EEEEEcCCccccHHHHHHHHHHcCCCeEEEEecc
Confidence 33333 6777888899999999999988776554
No 134
>COG0731 Fe-S oxidoreductases [Energy production and conversion]
Probab=98.56 E-value=3.6e-06 Score=82.32 Aligned_cols=212 Identities=14% Similarity=0.232 Sum_probs=143.8
Q ss_pred CccCCCCcCCCCCCCCC-----CCCCCcchHHHHHHHHHhc------CCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHh
Q 017200 137 DTCTRGCRFCNVKTSRA-----PPPPDPDEPTNVAEAIASW------GLDYVVITSVDRDDLADQGSGHFAQTVRKLKEL 205 (375)
Q Consensus 137 d~C~~~C~FC~v~~~r~-----~~~ld~eEi~~~a~al~~~------G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~ 205 (375)
..|+.+|-||-...... |...+.++|.+..+.+... ..++|-|++.--|.|. .++-++|+.+|+.
T Consensus 32 ~~Cs~~CvyC~~G~~~~~~~~~~efi~~~~I~~~~~~~~~~~g~ea~~pd~vtis~~GEPTLy----~~L~elI~~~k~~ 107 (296)
T COG0731 32 KWCSYNCVYCWRGRTKKGTPERPEFIVEESILEELKLLLGYKGDEATEPDHVTISLSGEPTLY----PNLGELIEEIKKR 107 (296)
T ss_pred hhhcCCCeEEecccCCCCCCCCCceecHHHHHHHHHHHhcccccccCCCCEEEEeCCCCcccc----cCHHHHHHHHHhc
Confidence 38999999999843221 1226778888888887766 5789999887656552 2467888888876
Q ss_pred CCCcEEEeecCCCCCChHHHHHHHHcCcccccccccchH-HHHHHhcCC--CCCHHHHHHHHHHHHHh-CCCCceEEEeE
Q 017200 206 KPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETVE-ELQSAVRDH--RANFKQSLDVLMMAKDY-VPAGTLTKTSI 281 (375)
Q Consensus 206 ~p~i~Ie~l~pd~~g~~e~l~~L~~aGldv~~hnlEtv~-rl~~~mr~r--~~s~~~~l~vl~~ak~~-~p~Gl~tkt~i 281 (375)
.- +.+-+++-.- -++.++.|.. +|.+-..+++.+ ..|++|+.+ +..|+..++.|+..++. ... +.+.+.+
T Consensus 108 g~-~~tflvTNgs--lpdv~~~L~~--~dql~~sLdA~~~~~~~~InRP~~~~~~e~ile~L~~~~~~~~~~-~vir~tl 181 (296)
T COG0731 108 GK-KTTFLVTNGS--LPDVLEELKL--PDQLYVSLDAPDEKTFRRINRPHKKDSWEKILEGLEIFRSEYKGR-TVIRTTL 181 (296)
T ss_pred CC-ceEEEEeCCC--hHHHHHHhcc--CCEEEEEeccCCHHHHHHhcCCCCcchHHHHHHHHHHhhhcCCCc-EEEEEEE
Confidence 42 3443344221 2567777763 677777788876 899999832 36789999999999985 333 5677777
Q ss_pred EEecCCCHHHHHHHHHHHHHcCCcEEeeecCCCCCCC--CCCccccCC-HHHHHHHHHHHHHhhhhhhccchhhhhhcch
Q 017200 282 MLGCGETPDQVVSTMEKVRAAGVDVMTFGQYMRPSKR--HMPVSEYIT-PEAFERYRALGMEMGFRYVASGPMVRSSYKV 358 (375)
Q Consensus 282 mvGlGET~ee~~etl~~Lrelgvd~v~i~qYl~P~~~--~~~v~~~v~-pe~~~~l~~~a~~~gf~~~~sgp~vrssy~a 358 (375)
+=|+--++|++.+..++|+.+.+|+|-+-.|++|... .++..+.+. .+..+.-+.++...|+.+..--.-.|-...|
T Consensus 182 vkg~N~~~e~~~~~a~ll~~~~Pd~velk~~~rpgas~~~l~~~~~p~~e~~~~f~~~l~~~~~~~~l~~~~~sr~~ll~ 261 (296)
T COG0731 182 VKGINDDEEELEEYAELLERINPDFVELKTYMRPGASRYRLPRSNMPLHEEVLEFAKELGEELGYEILDESEGSRVVLLA 261 (296)
T ss_pred eccccCChHHHHHHHHHHHhcCCCeEEEecCccCChHhhccCccccchhHHHHHHHHHhhcccCeeeeeccCCceEEEcc
Confidence 7788778888999999999999999999999998432 233333222 2223333445555566666554455555555
No 135
>PRK14464 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=98.56 E-value=4.8e-06 Score=83.32 Aligned_cols=200 Identities=11% Similarity=0.077 Sum_probs=123.3
Q ss_pred eCCccCCCCcCCCCCCCCCCCCCCcchHHHHHHHHHhc-CCcEEEEEe-eeCCCCCcccHHHHHHHHHHHHHhC--CCcE
Q 017200 135 LGDTCTRGCRFCNVKTSRAPPPPDPDEPTNVAEAIASW-GLDYVVITS-VDRDDLADQGSGHFAQTVRKLKELK--PNML 210 (375)
Q Consensus 135 i~d~C~~~C~FC~v~~~r~~~~ld~eEi~~~a~al~~~-G~~eIvLTs-gdr~dl~d~G~~~~~~lir~Ik~~~--p~i~ 210 (375)
-+.+|+.+|+||......-...++.+|+++.+..+.+. .+++||++| |+.-+. .+...+.++.|.+.. +.-+
T Consensus 102 sQvGC~~~C~FC~tg~~g~~RnLs~~EI~~Qv~~~~~~~~i~nIVfmGmGEPl~N----~d~vl~ai~~l~~~~~i~~r~ 177 (344)
T PRK14464 102 TQVGCAVGCVFCMTGRSGLLRQLGSAEIVAQVVLARRRRAVKKVVFMGMGEPAHN----LDNVLEAIDLLGTEGGIGHKN 177 (344)
T ss_pred ccCCcCCCCCcCcCCCCCCCCCCCHHHHHHHHHHHHhcCCCCEEEEeccCcccCC----HHHHHHHHHHhhchhcCCCce
Confidence 47899999999987643222247899999988877664 589999999 664322 334555555554321 2222
Q ss_pred EEeecCCCCCChHHHHHHHHcCcc-cccccccch-HHHHHHhcC--CCCCHHHHHHHHHHHHHhCCCCceEEEeEEE-ec
Q 017200 211 IEALVPDFRGNNGCVREVAKSGLN-VFAHNIETV-EELQSAVRD--HRANFKQSLDVLMMAKDYVPAGTLTKTSIML-GC 285 (375)
Q Consensus 211 Ie~l~pd~~g~~e~l~~L~~aGld-v~~hnlEtv-~rl~~~mr~--r~~s~~~~l~vl~~ak~~~p~Gl~tkt~imv-Gl 285 (375)
|-+++ .|....+..|.+.++. .++..+.+. ++++.++.| ++++.++-++.++...+.... ..+--.+|+ |+
T Consensus 178 itiST---~G~~~~i~rL~~~~v~~~LaiSLhA~~~e~R~~imP~~~~~~l~el~~a~~~~~~~~gr-ri~~EyvLl~GV 253 (344)
T PRK14464 178 LVFST---VGDPRVFERLPQQRVKPALALSLHTTRAELRARLLPRAPRIAPEELVELGEAYARATGY-PIQYQWTLLEGV 253 (344)
T ss_pred EEEec---ccCchHHHHHHHhcCChHHHHHhcCCChhHhheeCCccCCCCHHHHHHHHHHHHHHHCC-EEEEEEEEeCCC
Confidence 32222 1245567777765443 234445654 488887775 577888888888777664322 233333444 78
Q ss_pred CCCHHHHHHHHHHHHHcCCcEEeeecCCCCCCCCCCccccCCHHHHHHHHHHHHHhhhhhh
Q 017200 286 GETPDQVVSTMEKVRAAGVDVMTFGQYMRPSKRHMPVSEYITPEAFERYRALGMEMGFRYV 346 (375)
Q Consensus 286 GET~ee~~etl~~Lrelgvd~v~i~qYl~P~~~~~~v~~~v~pe~~~~l~~~a~~~gf~~~ 346 (375)
-.++|+..+..+.|+.+.+. |.+-+| .|. .+.... .+.+++.+.+.++-.+.|....
T Consensus 254 NDs~e~a~~L~~~l~~~~~~-vNLIPy-N~v-~g~~~~-rp~~~~i~~f~~~L~~~gi~~t 310 (344)
T PRK14464 254 NDSDEEMDGIVRLLKGKYAV-MNLIPY-NSV-DGDAYR-RPSGERIVAMARYLHRRGVLTK 310 (344)
T ss_pred CCCHHHHHHHHHHHhccccc-cceecC-Ccc-CCCCcc-CCCHHHHHHHHHHHHHCCceEE
Confidence 99999999999999977653 333344 231 122222 2446677777776677776543
No 136
>PRK14462 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=98.48 E-value=1.9e-05 Score=79.53 Aligned_cols=202 Identities=11% Similarity=0.133 Sum_probs=127.5
Q ss_pred eeeCCccCCCCcCCCCCCCCCCCCCCcchHHHHHHHHHhc------CCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhC
Q 017200 133 MILGDTCTRGCRFCNVKTSRAPPPPDPDEPTNVAEAIASW------GLDYVVITSVDRDDLADQGSGHFAQTVRKLKELK 206 (375)
Q Consensus 133 m~i~d~C~~~C~FC~v~~~r~~~~ld~eEi~~~a~al~~~------G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~ 206 (375)
+.-+.||..+|.||+-....-...++++||++.+..+... .+..||+.|+--+ +- ..+.+.+.++.+++..
T Consensus 114 vSsQvGC~~~C~FCatg~~g~~RnLt~~EIv~QV~~~~~~~~~~~~~~~~vVfmGmGEP-L~--N~d~v~~~l~~l~~~~ 190 (356)
T PRK14462 114 VSSQVGCKVGCAFCLTAKGGFVRNLSAGEIVGQILWIKKDNNIPYEKRVNIVYMGMGEP-LD--NLDNVSKAIKIFSEND 190 (356)
T ss_pred eeccccCCCCCccCCCCCCCCcccCCHHHHHHHHHHHHHhhhccccccCCeEEeCCccc-cc--CHHHHHHHHHHhcCcc
Confidence 3347899999999976643212358999999998765542 2568888854322 11 1456778888887632
Q ss_pred CCc-----EEEeecCCCCCChHHHHHHHHcCccc-ccccccch-HHHHHHhcC--CCCCHHHHHHHHHHHHHhCCCCceE
Q 017200 207 PNM-----LIEALVPDFRGNNGCVREVAKSGLNV-FAHNIETV-EELQSAVRD--HRANFKQSLDVLMMAKDYVPAGTLT 277 (375)
Q Consensus 207 p~i-----~Ie~l~pd~~g~~e~l~~L~~aGldv-~~hnlEtv-~rl~~~mr~--r~~s~~~~l~vl~~ak~~~p~Gl~t 277 (375)
++ +|.+.+-.+ .+.++.|.+.++.+ +...+... ++.++++-| +++..++.++.++...+....-+.+
T Consensus 191 -Gl~~~~r~itVsTsG~---~~~i~~L~~~dl~v~LaiSLha~d~e~r~~l~pv~~~~~l~~ll~~l~~y~~~~~~~i~i 266 (356)
T PRK14462 191 -GLAISPRRQTISTSGL---ASKIKKLGEMNLGVQLAISLHAVDDELRSELMPINKAYNIESIIDAVRKFPIDQRKRVMF 266 (356)
T ss_pred -CCCcCCCceEEECCCC---hHHHHHHHhcCCCeEEEEECCCCCHHHHHHhCCCCccCCHHHHHHHHHHHHHHhCCeEEE
Confidence 23 444444333 35677777765422 33344443 588888775 3556688888776433222222556
Q ss_pred EEeEEEecCCCHHHHHHHHHHHHHcCCcEEeeecCCCCCCCCCCccccCCHHHHHHHHHHHHHhhhhh
Q 017200 278 KTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQYMRPSKRHMPVSEYITPEAFERYRALGMEMGFRY 345 (375)
Q Consensus 278 kt~imvGlGET~ee~~etl~~Lrelgvd~v~i~qYl~P~~~~~~v~~~v~pe~~~~l~~~a~~~gf~~ 345 (375)
.--+|=|+--++||..+..++++.+++ .|.+-+| .|.. ..+. +...+++.+.++++..+.|+..
T Consensus 267 eyvLI~GvNDs~e~a~~La~llk~l~~-~VnLIPy-n~~~-~~~~-~~ps~e~i~~f~~~l~~~gi~v 330 (356)
T PRK14462 267 EYLVIKDVNDDLKSAKKLVKLLNGIKA-KVNLILF-NPHE-GSKF-ERPSLEDMIKFQDYLNSKGLLC 330 (356)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhcCc-EEEEEeC-CCCC-CCCC-CCCCHHHHHHHHHHHHHCCCcE
Confidence 777777999999999999999999875 5666555 2311 1122 2245677888888877777654
No 137
>TIGR02494 PFLE_PFLC glycyl-radical enzyme activating protein family. This subset of the radical-SAM family (pfam04055) includes a number of probable activating proteins acting on different enzymes all requiring an amino-acid-centered radical. The closest relatives to this family are the pyruvate-formate lyase activating enzyme (PflA, 1.97.1.4, TIGR02493) and the anaerobic ribonucleotide reductase activating enzyme (TIGR02491). Included within this subfamily are activators of hydroxyphenyl acetate decarboxylase (HdpA, ), benzylsuccinate synthase (BssD, ), gycerol dehydratase (DhaB2, ) as well as enzymes annotated in E. coli as activators of different isozymes of pyruvate-formate lyase (PFLC and PFLE) however, these appear to lack characterization and may activate enzymes with distinctive functions. Most of the sequence-level variability between these forms is concentrated within an N-terminal domain which follows a conserved group of three cysteines and contains a variable pattern of 0
Probab=98.45 E-value=9.3e-06 Score=78.93 Aligned_cols=172 Identities=13% Similarity=0.101 Sum_probs=110.6
Q ss_pred CCcchHHHHHHHHHh---cCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCCCcEEEeecCCCCCChHHHHHHHHcCc
Q 017200 157 PDPDEPTNVAEAIAS---WGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGL 233 (375)
Q Consensus 157 ld~eEi~~~a~al~~---~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGl 233 (375)
++.+++.+.++.... .+...|.+|||+---. .+.+.++++.+++. ++.+.+.+-.+. ..+.++.+.+. +
T Consensus 106 ~t~eel~~~i~~~~~~~~~~~~~V~~sGGEPll~----~~~l~~l~~~~k~~--g~~~~i~TnG~~-~~~~~~~ll~~-~ 177 (295)
T TIGR02494 106 MTVEEVMRVVLRDSIFYRNSGGGVTLSGGEPLLQ----PEFALALLQACHER--GIHTAVETSGFT-PWETIEKVLPY-V 177 (295)
T ss_pred CcHHHHHHHHHHHHHhcccCCCcEEeeCcchhch----HHHHHHHHHHHHHc--CCcEeeeCCCCC-CHHHHHHHHhh-C
Confidence 466777776655432 2456899999864321 23346888888875 345554443332 34667777653 6
Q ss_pred ccccccccch-HHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcC--CcEEeee
Q 017200 234 NVFAHNIETV-EELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAG--VDVMTFG 310 (375)
Q Consensus 234 dv~~hnlEtv-~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~tkt~imvGlGET~ee~~etl~~Lrelg--vd~v~i~ 310 (375)
|.+...+... ++.|.+++ +.+++..++.++.+.+.... +.+.+.+|-|+-.+.+|+.+.++++++++ ++.+.+.
T Consensus 178 d~~~isl~~~~~~~~~~~~--g~~~~~vl~~i~~l~~~~~~-~~i~~~~v~~~n~~~~ei~~l~~~~~~~~~~v~~v~l~ 254 (295)
T TIGR02494 178 DLFLFDIKHLDDERHKEVT--GVDNEPILENLEALAAAGKN-VVIRIPVIPGFNDSEENIEAIAAFLRKLEPGVDEIDLL 254 (295)
T ss_pred CEEEEeeccCChHHHHHHh--CCChHHHHHHHHHHHhCCCc-EEEEeceeCCcCCCHHHHHHHHHHHHHhccCCceEEec
Confidence 7766667765 58888887 35788889999998884222 44555567677788899999999999998 7788886
Q ss_pred cCCCCCC--------CCCCcccc--CCHHHHHHHHHHHHH
Q 017200 311 QYMRPSK--------RHMPVSEY--ITPEAFERYRALGME 340 (375)
Q Consensus 311 qYl~P~~--------~~~~v~~~--v~pe~~~~l~~~a~~ 340 (375)
+|. |.. ...++.++ ++.++.+.+.++..+
T Consensus 255 ~~~-~~g~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 293 (295)
T TIGR02494 255 PYH-RLGENKYRQLGREYPDSEIPDPAEEQLLELKEIFES 293 (295)
T ss_pred CCC-chhHHHHHHhCCCCccCCCCCCCHHHHHHHHHHHHh
Confidence 664 311 11222222 445666666665544
No 138
>PRK11194 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=98.44 E-value=4.5e-05 Score=77.26 Aligned_cols=201 Identities=11% Similarity=0.139 Sum_probs=124.7
Q ss_pred eCCccCCCCcCCCCCCCCCCCCCCcchHHHHHHHHHhc----------CCcEEEEEeeeCCCCCcccHHHHHHHHHHHHH
Q 017200 135 LGDTCTRGCRFCNVKTSRAPPPPDPDEPTNVAEAIASW----------GLDYVVITSVDRDDLADQGSGHFAQTVRKLKE 204 (375)
Q Consensus 135 i~d~C~~~C~FC~v~~~r~~~~ld~eEi~~~a~al~~~----------G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~ 204 (375)
-+-||+.+|.||+-+...-...++.+||++.+..+... +++.||+.|+--|-+ ..+.+.+.++.+++
T Consensus 109 sQvGC~~~C~FC~t~~~g~~rnLt~~EIv~Qv~~~~~~~~~~~~~gg~~~~nvV~mGmGEPL~---N~d~v~~al~~l~~ 185 (372)
T PRK11194 109 SQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIGAAKVTGQRPITNVVMMGMGEPLL---NLNNVVPAMEIMLD 185 (372)
T ss_pred cCCCCCCcCCCCCCCCCCCCCcCCHHHHHHHHHHHHHHhhhccccCCcccceEEEecCCcccc---CHHHHHHHHHHHhh
Confidence 46899999999987643212348999999987665431 278999998533322 14455666777764
Q ss_pred hCC-Cc---EEEeecCCCCCChHHHHHHHHcCcc-cccccccc-hHHHHHHhcCC--CCCHHHHHHHHHHHHHhCC---C
Q 017200 205 LKP-NM---LIEALVPDFRGNNGCVREVAKSGLN-VFAHNIET-VEELQSAVRDH--RANFKQSLDVLMMAKDYVP---A 273 (375)
Q Consensus 205 ~~p-~i---~Ie~l~pd~~g~~e~l~~L~~aGld-v~~hnlEt-v~rl~~~mr~r--~~s~~~~l~vl~~ak~~~p---~ 273 (375)
... ++ +|.+.+-. ....++.+.+.. | .+...+.. .++.++++.|. ++..++.++.++..-+..+ .
T Consensus 186 ~~g~~i~~r~itVsTsG---~~~~i~~l~~~~-d~~LaiSLha~d~e~R~~lmPin~~~~l~~ll~a~~~y~~~~~~~~r 261 (372)
T PRK11194 186 DFGFGLSKRRVTLSTSG---VVPALDKLGDMI-DVALAISLHAPNDELRDEIVPINKKYNIETFLAAVRRYLEKSNANQG 261 (372)
T ss_pred hhccCcCCCeEEEECCC---CchHHHHHHhcc-CeEEEeeccCCCHHHHHHhcCCcccccHHHHHHHHHHHHHhcccCCC
Confidence 321 12 55554432 234566666543 4 23333443 45888888753 4555666655544433221 1
Q ss_pred CceEEEeEEEecCCCHHHHHHHHHHHHHcCCcEEeeecCCCCCCCCCCccccCCHHHHHHHHHHHHHhhhhhh
Q 017200 274 GTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQYMRPSKRHMPVSEYITPEAFERYRALGMEMGFRYV 346 (375)
Q Consensus 274 Gl~tkt~imvGlGET~ee~~etl~~Lrelgvd~v~i~qYl~P~~~~~~v~~~v~pe~~~~l~~~a~~~gf~~~ 346 (375)
-+.+..-+|=|+-.++|++.+..++++.+++ .|.+-+| .|.. ..+. +...++..+.+.++..+.|+...
T Consensus 262 rI~irypLIpGvNDs~e~a~~La~ll~~l~~-~VnLIPY-N~~~-~~~~-~~ps~e~v~~f~~~L~~~Gi~vt 330 (372)
T PRK11194 262 RVTVEYVMLDHVNDGTEHAHQLAELLKDTPC-KINLIPW-NPFP-GAPY-GRSSNSRIDRFSKVLMEYGFTVI 330 (372)
T ss_pred eEEEEEEeECCCCCCHHHHHHHHHHHhcCCc-eEEEecC-CCCC-CCCC-CCCCHHHHHHHHHHHHHCCCeEE
Confidence 2677888889999999999999999999864 5666555 3321 1222 22456677888888777787543
No 139
>PRK14454 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=98.35 E-value=7.8e-05 Score=74.74 Aligned_cols=203 Identities=10% Similarity=0.122 Sum_probs=123.5
Q ss_pred EEeeeCCccCCCCcCCCCCCCCCCCCCCcchHHHHHHHHHhc---CCcEEEE-EeeeCCCCCcccHHHHHHHHHHHHHhC
Q 017200 131 TIMILGDTCTRGCRFCNVKTSRAPPPPDPDEPTNVAEAIASW---GLDYVVI-TSVDRDDLADQGSGHFAQTVRKLKELK 206 (375)
Q Consensus 131 tfm~i~d~C~~~C~FC~v~~~r~~~~ld~eEi~~~a~al~~~---G~~eIvL-Tsgdr~dl~d~G~~~~~~lir~Ik~~~ 206 (375)
..+..+.||+.+|.||+-....-...++++||++.+...... .++.||+ .||+.- + ..+.+.++++.+++..
T Consensus 103 ~cvSsqvGC~~~C~FC~tg~~G~~rnlt~~EI~~qv~~~~~~~~~~~~gvV~mggGEPL-l---n~d~v~~~l~~l~~~~ 178 (342)
T PRK14454 103 ICVSTQVGCRMGCKFCASTIGGMVRNLTAGEMLDQILAAQNDIGERISNIVLMGSGEPL-D---NYENVMKFLKIVNSPY 178 (342)
T ss_pred EEEEcCCCCCCcCCcCCCCCCCCcccCCHHHHHHHHHHHHHHhcCCCCCEEEECCchhh-c---CHHHHHHHHHHHhccc
Confidence 345568899999999976543212248999999998876542 3566664 444422 1 1455677787777532
Q ss_pred CCc-----EEEeecCCCCCChHHHHHHHHcCccc-ccccccch-HHHHHHhcC--CCCCHHHHHHHHHH-HHHhCCCCce
Q 017200 207 PNM-----LIEALVPDFRGNNGCVREVAKSGLNV-FAHNIETV-EELQSAVRD--HRANFKQSLDVLMM-AKDYVPAGTL 276 (375)
Q Consensus 207 p~i-----~Ie~l~pd~~g~~e~l~~L~~aGldv-~~hnlEtv-~rl~~~mr~--r~~s~~~~l~vl~~-ak~~~p~Gl~ 276 (375)
++ ++.+.+-.+ ...+..+.+.++.+ +...+-.. ++.++++.| .++..++.++.++. ..+. ..-+.
T Consensus 179 -gi~~~~r~itvsTsG~---~p~i~~l~~~~~~~~laisLka~d~e~r~~l~pv~~~~~L~~l~~~~~~~~~~~-~~rv~ 253 (342)
T PRK14454 179 -GLNIGQRHITLSTCGI---VPKIYELADENLQITLAISLHAPNDELRKKMMPIANKYSIEELIEACKYYINKT-NRRIT 253 (342)
T ss_pred -ccCcCCCceEEECcCC---hhHHHHHHhhcccceEEEecCCCCHHHHHHhcCCcccCCHHHHHHHHHHHHHHh-CCEEE
Confidence 23 455544333 22367777664321 33334443 477777775 34556666655544 2332 11144
Q ss_pred EEEeEEEecCCCHHHHHHHHHHHHHcCCcEEeeecCCCCCCCCCCccccCCHHHHHHHHHHHHHhhhhhh
Q 017200 277 TKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQYMRPSKRHMPVSEYITPEAFERYRALGMEMGFRYV 346 (375)
Q Consensus 277 tkt~imvGlGET~ee~~etl~~Lrelgvd~v~i~qYl~P~~~~~~v~~~v~pe~~~~l~~~a~~~gf~~~ 346 (375)
+.--+|=|+..++|++.+..++++.+.+ .|.+-+| .|.. ..+. +...+++.+.+.++..+.|+...
T Consensus 254 iey~LI~gvNDs~eda~~La~llk~l~~-~VnLiPy-n~~~-~~~~-~~ps~e~l~~f~~~l~~~gi~v~ 319 (342)
T PRK14454 254 FEYALVKGVNDSKEDAKELGKLLKGMLC-HVNLIPV-NEVK-ENGF-KKSSKEKIKKFKNILKKNGIETT 319 (342)
T ss_pred EEEEeECCCCCCHHHHHHHHHHHhcCCc-eEEEEec-CCCC-CCCC-CCCCHHHHHHHHHHHHHCCCcEE
Confidence 5666777889999999999999998753 5565555 3321 1122 22456788888888888887654
No 140
>PRK14465 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=98.31 E-value=0.0001 Score=73.87 Aligned_cols=199 Identities=10% Similarity=0.045 Sum_probs=124.0
Q ss_pred eCCccCCCCcCCCCCCCCCCCCCCcchHHHHHHHHHh---cCCcEEEEEe-eeCCCCCcccHHHHHHHHHHHHHhC----
Q 017200 135 LGDTCTRGCRFCNVKTSRAPPPPDPDEPTNVAEAIAS---WGLDYVVITS-VDRDDLADQGSGHFAQTVRKLKELK---- 206 (375)
Q Consensus 135 i~d~C~~~C~FC~v~~~r~~~~ld~eEi~~~a~al~~---~G~~eIvLTs-gdr~dl~d~G~~~~~~lir~Ik~~~---- 206 (375)
-+-||+.+|+||+-....-...++.+||+..+-.+.+ ..+..||+-| |+.- + ..+.+.+.++.|+...
T Consensus 111 sQvGC~m~C~FC~tg~~g~~rnlta~EI~~qv~~~~~~~~~~~~niVFmGmGEPL-~---N~d~V~~~~~~l~~~~~~~~ 186 (342)
T PRK14465 111 SQIGCTLNCKFCATAKLEFQGNLKAHEIVDQVLQVEKIVGDRATNVVFMGMGEPM-H---NYFNVIRAASILHDPDAFNL 186 (342)
T ss_pred ecCCCCCCCCCCcCCCCCccCCCCHHHHHHHHHHHHHhcCCCceEEEEEcCCcch-h---hHHHHHHHHHHHhChhhhcC
Confidence 4779999999998866432234889999988876654 3589999999 6531 1 1344556666565431
Q ss_pred CCcEEEeecCCCCCChHHHHHHHHcCc-ccccccccch-HHHHHHhcC--CCCCHHHHHHHHHHHHHhCCCCceEEEeEE
Q 017200 207 PNMLIEALVPDFRGNNGCVREVAKSGL-NVFAHNIETV-EELQSAVRD--HRANFKQSLDVLMMAKDYVPAGTLTKTSIM 282 (375)
Q Consensus 207 p~i~Ie~l~pd~~g~~e~l~~L~~aGl-dv~~hnlEtv-~rl~~~mr~--r~~s~~~~l~vl~~ak~~~p~Gl~tkt~im 282 (375)
..-+|.+.+-. ....+..+.+... -.++..+... ++++.++-| +++..++.++.++...+....-+.+.--+|
T Consensus 187 ~~r~itvST~G---~~~~i~~l~~~~~~~~LaiSLhA~~~e~R~~l~Pi~~~~~le~ll~al~~~~~~~~r~v~ieyvLI 263 (342)
T PRK14465 187 GAKRITISTSG---VVNGIRRFIENKEPYNFAISLNHPDPNGRLQIMDIEEKFPLEELLQAAKDFTRELKRRITFEYVMI 263 (342)
T ss_pred CCCeEEEeCCC---chHHHHHHHhhccCceEEEEecCCChhhcceEeeccccCCHHHHHHHHHHHHHHcCCEEEEEEEEE
Confidence 11255555432 2344566654322 2355556655 488888754 578889999999866543222133334445
Q ss_pred EecCCCHHHHHHHHHHHHHcCCcEEeeecCCCCCCCCCCccccCCHHHHHHHHHHHHHhhhhh
Q 017200 283 LGCGETPDQVVSTMEKVRAAGVDVMTFGQYMRPSKRHMPVSEYITPEAFERYRALGMEMGFRY 345 (375)
Q Consensus 283 vGlGET~ee~~etl~~Lrelgvd~v~i~qYl~P~~~~~~v~~~v~pe~~~~l~~~a~~~gf~~ 345 (375)
=|+-.++||+.+..+.++.+++. |.+-+|= |. ..... ..++++.+.+.++-.+.|+..
T Consensus 264 ~GvNDs~eda~~L~~ll~~l~~k-VnLIPyN-~~--~~~~~-~ps~e~i~~F~~~L~~~Gi~v 321 (342)
T PRK14465 264 PGVNMGRENANKLVKIARSLDCK-INVIPLN-TE--FFGWR-RPTDDEVAEFIMLLEPAGVPI 321 (342)
T ss_pred CCccCCHHHHHHHHHHHhhCCCc-EEEEccC-CC--CCCCC-CCCHHHHHHHHHHHHHCCCeE
Confidence 57788999999999999998743 4444552 31 22222 245667777777777766654
No 141
>KOG2876 consensus Molybdenum cofactor biosynthesis pathway protein [Coenzyme transport and metabolism]
Probab=98.30 E-value=7.8e-07 Score=85.00 Aligned_cols=171 Identities=19% Similarity=0.262 Sum_probs=114.5
Q ss_pred EEEe--eeCCccCCCCcCCCCCCCCC--CCC--CCcchHHHHHHHHHhcCCcEEEEEeee---CCCCCcccHHHHHHHHH
Q 017200 130 ATIM--ILGDTCTRGCRFCNVKTSRA--PPP--PDPDEPTNVAEAIASWGLDYVVITSVD---RDDLADQGSGHFAQTVR 200 (375)
Q Consensus 130 atfm--~i~d~C~~~C~FC~v~~~r~--~~~--ld~eEi~~~a~al~~~G~~eIvLTsgd---r~dl~d~G~~~~~~lir 200 (375)
-||+ .+++.|+.+|.||++..++. |.. +...||++.+...+..|++.+.||||+ +.|..+ .+.
T Consensus 10 htyLrislte~cnlrc~ycMpsegv~l~pk~~~lav~eilrl~~~F~~qgv~knrLtggeptIr~di~~--------i~~ 81 (323)
T KOG2876|consen 10 HTYLRISLTEKCNLRCQYCMPSEGVPLKPKRKLLAVSEILRLAGLFAPQGVDKNRLTGGEPLIRQDIVP--------IVA 81 (323)
T ss_pred hhhhhhhhhhccccccceechhcCCcCccchhhcchhhhHHhhhhhhHhhhhhhhhcCCCCcccccccc--------hhh
Confidence 3454 35899999999999998762 322 788999999999999999999999996 444322 122
Q ss_pred HHHHhCCCcEEEeecCCCCCChHHHHHHHHcCcccccccccch-HHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCceEEE
Q 017200 201 KLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETV-EELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKT 279 (375)
Q Consensus 201 ~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGldv~~hnlEtv-~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~tkt 279 (375)
.+.. +|++.--.+++.-.-....+-.+.++|++.++..+++- ..-+.++- ++..+...+.-++.+.+..-.-..+.+
T Consensus 82 g~~~-l~gLks~~ITtng~vl~R~lp~lhkaglssiNiSldtl~~aKfa~~~-rr~g~v~V~~~iq~a~~lgy~pvkvn~ 159 (323)
T KOG2876|consen 82 GLSS-LPGLKSIGITTNGLVLARLLPQLHKAGLSSINISLDTLVRAKFAKLT-RRKGFVKVWASIQLAIELGYNPVKVNC 159 (323)
T ss_pred hhhc-ccchhhhceeccchhhhhhhhHHHhhcccchhhhhhhhhHHHHHHHh-hhccHHHHHHHHhHHhhhCCCCcceee
Confidence 2211 12221111222111134677889999999999999975 46667776 688899999999999875432134555
Q ss_pred eEEEecCCCHHHHHHHHHHHHHcCCcEEeeecCC
Q 017200 280 SIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQYM 313 (375)
Q Consensus 280 ~imvGlGET~ee~~etl~~Lrelgvd~v~i~qYl 313 (375)
-+|=|+ .+.|+.+....-+...+|+..+ .||
T Consensus 160 v~~k~~--n~~ev~Dfv~~tr~~p~DVrfI-e~m 190 (323)
T KOG2876|consen 160 VVMKGL--NEDEVFDFVLLTRMRPLDVRFI-EFM 190 (323)
T ss_pred EEEecc--CCCcccceeeecCCCCcceEEE-Eec
Confidence 555555 4455666666666666776655 455
No 142
>COG1244 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=98.29 E-value=2.1e-05 Score=77.25 Aligned_cols=173 Identities=18% Similarity=0.333 Sum_probs=119.5
Q ss_pred cEEEEeeeCCccC----CCCcCCCCCCCCCCCCCCcchHHHHHHHHHhc-C--CcE---EEEEeee---CCCCCcccHHH
Q 017200 128 ATATIMILGDTCT----RGCRFCNVKTSRAPPPPDPDEPTNVAEAIASW-G--LDY---VVITSVD---RDDLADQGSGH 194 (375)
Q Consensus 128 ~tatfm~i~d~C~----~~C~FC~v~~~r~~~~ld~eEi~~~a~al~~~-G--~~e---IvLTsgd---r~dl~d~G~~~ 194 (375)
++.|++.-+.||. .+|.+|+......+.+.+.+++.+....+.+. . .++ -++|||- ....|+ +-
T Consensus 46 k~l~vILrT~GC~w~~~~gC~MCgY~~d~~~~~vs~E~l~~qfd~~~~k~~~~~~~~~vkIFTSGSFLD~~EVP~---e~ 122 (358)
T COG1244 46 KSLTVILRTRGCRWYREGGCYMCGYPADSAGEPVSEENLINQFDEAYSKYEGKFDEFVVKIFTSGSFLDPEEVPR---EA 122 (358)
T ss_pred ceEEEEEecCCcceeccCCcceeccccccCCCCCCHHHHHHHHHHHHHHhcccCCCceEEEEcccccCChhhCCH---HH
Confidence 4667777788885 46999999876445678888888877665432 2 223 3678883 333453 22
Q ss_pred HHHHHHHHHHhC--CCcEEEeecCCCCCChHHHHHHHHc--Cccc-ccccccchH-HHH-HHhcCCCCCHHHHHHHHHHH
Q 017200 195 FAQTVRKLKELK--PNMLIEALVPDFRGNNGCVREVAKS--GLNV-FAHNIETVE-ELQ-SAVRDHRANFKQSLDVLMMA 267 (375)
Q Consensus 195 ~~~lir~Ik~~~--p~i~Ie~l~pd~~g~~e~l~~L~~a--Gldv-~~hnlEtv~-rl~-~~mr~r~~s~~~~l~vl~~a 267 (375)
-..+++.|.+.. -.+.|| .-|+|. ++|.|+++.+. |..+ ++.++||++ ++. ..|+ .+-+++++++..+.+
T Consensus 123 R~~Il~~is~~~~v~~vvvE-SRpE~I-~eE~l~e~~~il~gk~~EvaIGLETanD~ire~sIN-KGftF~df~~A~~~i 199 (358)
T COG1244 123 RRYILERISENDNVKEVVVE-SRPEFI-REERLEEITEILEGKIVEVAIGLETANDKIREDSIN-KGFTFEDFVRAAEII 199 (358)
T ss_pred HHHHHHHHhhccceeEEEee-cCchhc-CHHHHHHHHHhhCCceEEEEEecccCcHHHHHHhhh-cCCcHHHHHHHHHHH
Confidence 234455555431 234444 457776 78888888876 4432 688899986 777 5688 799999999999999
Q ss_pred HHhCCCCceEEEeEEEec-----CCCHHHHHHHHHHHHHcCCcEEeee
Q 017200 268 KDYVPAGTLTKTSIMLGC-----GETPDQVVSTMEKVRAAGVDVMTFG 310 (375)
Q Consensus 268 k~~~p~Gl~tkt~imvGl-----GET~ee~~etl~~Lrelgvd~v~i~ 310 (375)
|+ .|+.++|.+|+=. .|..+|++.++. ..+-+.|.|.|-
T Consensus 200 r~---~g~~vktYlllKP~FlSE~eAI~D~i~Si~-~~~~~~d~iSin 243 (358)
T COG1244 200 RN---YGAKVKTYLLLKPPFLSEKEAIEDVISSIV-AAKPGTDTISIN 243 (358)
T ss_pred HH---cCCceeEEEEecccccChHHHHHHHHHHHH-HhccCCCeEEec
Confidence 98 5789999999865 455567777777 445577888884
No 143
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=98.24 E-value=5.2e-05 Score=71.97 Aligned_cols=147 Identities=19% Similarity=0.285 Sum_probs=115.4
Q ss_pred CCCcchHHHHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCCCcEEEeecCCCCCChHHHHHHHHcCccc
Q 017200 156 PPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNV 235 (375)
Q Consensus 156 ~ld~eEi~~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGldv 235 (375)
.++.++..+.++.+.+.|+++|-++++..+..... .....+.++.+++..|++.+.++... ..+.++.++++|++.
T Consensus 15 ~~s~e~~~~i~~~L~~~GV~~IEvg~~~~~~~~p~-~~~~~~~i~~l~~~~~~~~~~~l~~~---~~~~i~~a~~~g~~~ 90 (265)
T cd03174 15 TFSTEDKLEIAEALDEAGVDSIEVGSGASPKAVPQ-MEDDWEVLRAIRKLVPNVKLQALVRN---REKGIERALEAGVDE 90 (265)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEeccCcCcccccc-CCCHHHHHHHHHhccCCcEEEEEccC---chhhHHHHHhCCcCE
Confidence 47999999999999999999999999976422100 12256788888887777888777653 267899999999999
Q ss_pred ccccccchHHHHHHh--c-CCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecC--CCHHHHHHHHHHHHHcCCcEEeee
Q 017200 236 FAHNIETVEELQSAV--R-DHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCG--ETPDQVVSTMEKVRAAGVDVMTFG 310 (375)
Q Consensus 236 ~~hnlEtv~rl~~~m--r-~r~~s~~~~l~vl~~ak~~~p~Gl~tkt~imvGlG--ET~ee~~etl~~Lrelgvd~v~i~ 310 (375)
+...+.+++ .+.+. + ++...++..++.++.+++ .|+.+..+++.-++ .+.+++.+.++.+.++|++.|.+.
T Consensus 91 i~i~~~~s~-~~~~~~~~~~~~~~~~~~~~~i~~a~~---~G~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~i~l~ 166 (265)
T cd03174 91 VRIFDSASE-THSRKNLNKSREEDLENAEEAIEAAKE---AGLEVEGSLEDAFGCKTDPEYVLEVAKALEEAGADEISLK 166 (265)
T ss_pred EEEEEecCH-HHHHHHhCCCHHHHHHHHHHHHHHHHH---CCCeEEEEEEeecCCCCCHHHHHHHHHHHHHcCCCEEEec
Confidence 988887776 22222 2 222367888889999998 57888888888888 999999999999999999998874
No 144
>PRK14461 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=98.23 E-value=0.00018 Score=72.54 Aligned_cols=199 Identities=13% Similarity=0.173 Sum_probs=125.6
Q ss_pred eCCccCCCCcCCCCCCCCCCCCCCcchHHHHHHHHHhc-----------------CCcEEEEEeeeCCCCCcccHHHHHH
Q 017200 135 LGDTCTRGCRFCNVKTSRAPPPPDPDEPTNVAEAIASW-----------------GLDYVVITSVDRDDLADQGSGHFAQ 197 (375)
Q Consensus 135 i~d~C~~~C~FC~v~~~r~~~~ld~eEi~~~a~al~~~-----------------G~~eIvLTsgdr~dl~d~G~~~~~~ 197 (375)
-+-||..+|+||+-.+.+-...|+..||+..+..+.+. .++.||+-|.--| ..-|-.
T Consensus 113 SQvGC~mgC~FCaTG~~G~~RNLt~~EIv~Qv~~~~~~l~~~~~~~~~~~~~~~~~i~NIVfMGMGEP------L~Nydn 186 (371)
T PRK14461 113 TQAGCGMGCVFCATGTLGLLRNLSSGEIVAQVIWASRELRAMGAAISKRHAGPVGRVTNLVFMGMGEP------FANYDR 186 (371)
T ss_pred ccCCccCCCCcccCCCCCcccCCCHHHHHHHHHHHHHHhhhcccccccccccccCceeeEEEEccCCc------hhhHHH
Confidence 36799999999987654322359999999988766431 2678888775333 223445
Q ss_pred HHHHHHHhC-CC------cEEEeecCCCCCChHHHHHHHHcCccc-ccccccch-HHHHHHhcC--CCCCHHHHHHHHHH
Q 017200 198 TVRKLKELK-PN------MLIEALVPDFRGNNGCVREVAKSGLNV-FAHNIETV-EELQSAVRD--HRANFKQSLDVLMM 266 (375)
Q Consensus 198 lir~Ik~~~-p~------i~Ie~l~pd~~g~~e~l~~L~~aGldv-~~hnlEtv-~rl~~~mr~--r~~s~~~~l~vl~~ 266 (375)
++++|+-.. |. -+|.+++-. -...++.|.+.++.+ ++..+... ++++.++-| +++..++-++.++.
T Consensus 187 V~~ai~il~d~~g~~is~R~ITVST~G---ivp~I~~la~~~~~v~LAiSLHA~~~e~R~~lmPin~~ypl~eLl~a~~~ 263 (371)
T PRK14461 187 WWQAVERLHDPQGFNLGARSMTVSTVG---LVKGIRRLANERLPINLAISLHAPDDALRSELMPVNRRYPIADLMAATRD 263 (371)
T ss_pred HHHHHHHhcCccccCcCCCceEEEeec---chhHHHHHHhcccCceEEEEeCCCCHHHHHHhcCcccCCCHHHHHHHHHH
Confidence 555554332 21 134444422 346678888766542 44455544 588888776 68888888888877
Q ss_pred HHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcC-----CcEEeeecCCCCCCCCCCccccCCHHHHHHHHHHHHHh
Q 017200 267 AKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAG-----VDVMTFGQYMRPSKRHMPVSEYITPEAFERYRALGMEM 341 (375)
Q Consensus 267 ak~~~p~Gl~tkt~imvGlGET~ee~~etl~~Lrelg-----vd~v~i~qYl~P~~~~~~v~~~v~pe~~~~l~~~a~~~ 341 (375)
.-+....-+.+.=-+|=|.-.++||..+..+.|+.++ ...|.+-+| .|. .+.+..+ ...++.+.+.++-.+.
T Consensus 264 y~~~t~rrit~EYvLi~gvNDs~e~A~~L~~llk~~~~~~~l~~~VNLIp~-Np~-~~~~~~~-ps~~~i~~F~~~L~~~ 340 (371)
T PRK14461 264 YIAKTRRRVSFEYVLLQGKNDHPEQAAALARLLRGEAPPGPLLVHVNLIPW-NPV-PGTPLGR-SERERVTTFQRILTDY 340 (371)
T ss_pred HHHhhCCEEEEEEEEECCCCCCHHHHHHHHHHHcCCccccCCceEEEEecC-CCC-CCCCCCC-CCHHHHHHHHHHHHHC
Confidence 7654333233444555577999999999999999872 235666555 342 2333222 4566777777777777
Q ss_pred hhhh
Q 017200 342 GFRY 345 (375)
Q Consensus 342 gf~~ 345 (375)
|...
T Consensus 341 gi~v 344 (371)
T PRK14461 341 GIPC 344 (371)
T ss_pred CceE
Confidence 7654
No 145
>COG1313 PflX Uncharacterized Fe-S protein PflX, homolog of pyruvate formate lyase activating proteins [General function prediction only]
Probab=98.21 E-value=2.6e-05 Score=75.72 Aligned_cols=198 Identities=14% Similarity=0.231 Sum_probs=118.5
Q ss_pred CccCCCCcCCCCCC---CCCCCCCCcchHHHHHHHHHhcCCcEEEEEeeeC-CCCCcccHHHHHHHHHHHHHhCCCcEEE
Q 017200 137 DTCTRGCRFCNVKT---SRAPPPPDPDEPTNVAEAIASWGLDYVVITSVDR-DDLADQGSGHFAQTVRKLKELKPNMLIE 212 (375)
Q Consensus 137 d~C~~~C~FC~v~~---~r~~~~ld~eEi~~~a~al~~~G~~eIvLTsgdr-~dl~d~G~~~~~~lir~Ik~~~p~i~Ie 212 (375)
.+|+.+|-||.-.- .+.....+++++.++...+.+.|.+-|-++||+. +. ...+++.++.+....|.+.-.
T Consensus 126 sgCnfrCVfCQNwdISq~~~g~~v~~e~La~i~~~~~~~GakNvN~Vgg~Ptp~-----lp~Ile~l~~~~~~iPvvwNS 200 (335)
T COG1313 126 SGCNFRCVFCQNWDISQFGIGKEVTPEDLAEIILELRRHGAKNVNFVGGDPTPH-----LPFILEALRYASENIPVVWNS 200 (335)
T ss_pred cCcceEEEEecCccccccCCCeEecHHHHHHHHHHHHHhcCcceeecCCCCCCc-----hHHHHHHHHHHhcCCCEEEec
Confidence 49999999997543 2212248999999999999999999999999974 22 334667776665555543332
Q ss_pred eecCCCCCChHHHHHHHHcCccccccccc-chHHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecCCC-HH
Q 017200 213 ALVPDFRGNNGCVREVAKSGLNVFAHNIE-TVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGET-PD 290 (375)
Q Consensus 213 ~l~pd~~g~~e~l~~L~~aGldv~~hnlE-tv~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~tkt~imvGlGET-~e 290 (375)
- .+. +.|.++.|... +|+|-.-+- ..++.-.+...-+-=|+-..+.+..+.+..+ |+.+.-=+|=|+-|. -.
T Consensus 201 n---mY~-s~E~l~lL~gv-VDiyL~DfKYgNdeca~kySkvp~Y~eVv~rn~~~~~~~~g-~~iiRHLVlPghlecCTk 274 (335)
T COG1313 201 N---MYM-SEETLKLLDGV-VDIYLPDFKYGNDECAEKYSKVPNYWEVVTRNILEAKEQVG-GLIIRHLVLPGHLECCTK 274 (335)
T ss_pred C---Ccc-CHHHHHHhhcc-ceeeecccccCCHHHHHHhhcCCchHHHHHHHHHHHHHhcC-ceEEEEEecCCchhhccH
Confidence 1 121 56666665443 566532221 1122222222111123444444555555432 477787788888766 55
Q ss_pred HHHHHHHHHHHcCCcEEeeecCCCCCCCC--C-CccccCCHHHHHHHHHHHHHhhhhhh
Q 017200 291 QVVSTMEKVRAAGVDVMTFGQYMRPSKRH--M-PVSEYITPEAFERYRALGMEMGFRYV 346 (375)
Q Consensus 291 e~~etl~~Lrelgvd~v~i~qYl~P~~~~--~-~v~~~v~pe~~~~l~~~a~~~gf~~~ 346 (375)
.+++-+...--..+-+--++|| +|.-+. . .+.+.++.++.+...++|++.||...
T Consensus 275 pI~~wiae~~g~~~~vNiM~QY-~P~ykA~eypeI~R~lt~eE~e~a~~~a~~~gl~~~ 332 (335)
T COG1313 275 PILRWIAENLGNDVRVNIMFQY-RPEYKAEEYPEINRRLTREEYEKALEYAEKLGLTNI 332 (335)
T ss_pred HHHHHHHHhCCCCeeEEehhhc-cchhhhhhchhhcccCCHHHHHHHHHHHHHcCCcee
Confidence 5554443322222223334566 574433 2 36777899999999999999998653
No 146
>PRK10076 pyruvate formate lyase II activase; Provisional
Probab=98.17 E-value=0.00021 Score=67.13 Aligned_cols=180 Identities=8% Similarity=0.047 Sum_probs=126.8
Q ss_pred CCCcchHHHHHHHHHh---cCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCCCcEEEeecCCCCCChHHHHHHHHcC
Q 017200 156 PPDPDEPTNVAEAIAS---WGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSG 232 (375)
Q Consensus 156 ~ld~eEi~~~a~al~~---~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aG 232 (375)
.++++|+++.++.-.. .+-.-|++|||+---. .+.+.++++.+|+. ++++.+-+-.+. +.+.++.+...
T Consensus 18 ~~t~eel~~~~~~~~~f~~~sggGVt~SGGEPllq----~~fl~~l~~~~k~~--gi~~~leTnG~~-~~~~~~~l~~~- 89 (213)
T PRK10076 18 DITLDALEREVMKDDIFFRTSGGGVTLSGGEVLMQ----AEFATRFLQRLRLW--GVSCAIETAGDA-PASKLLPLAKL- 89 (213)
T ss_pred ccCHHHHHHHHHhhhHhhcCCCCEEEEeCchHHcC----HHHHHHHHHHHHHc--CCCEEEECCCCC-CHHHHHHHHHh-
Confidence 3789999988776433 2556899999974221 34567889999875 566655444332 56777777654
Q ss_pred cccccccccch-HHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcCCcEEeeec
Q 017200 233 LNVFAHNIETV-EELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQ 311 (375)
Q Consensus 233 ldv~~hnlEtv-~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~tkt~imvGlGET~ee~~etl~~Lrelgvd~v~i~q 311 (375)
+|.+..-+=.. ++.|+++. +.+.+..++.++.+.+.... +.+.+-+|=|+--++|++....+++++++++.+.+.+
T Consensus 90 ~D~~l~DiK~~d~~~~~~~t--G~~~~~il~nl~~l~~~g~~-v~iR~~vIPg~nd~~e~i~~ia~~l~~l~~~~~~llp 166 (213)
T PRK10076 90 CDEVLFDLKIMDATQARDVV--KMNLPRVLENLRLLVSEGVN-VIPRLPLIPGFTLSRENMQQALDVLIPLGIKQIHLLP 166 (213)
T ss_pred cCEEEEeeccCCHHHHHHHH--CCCHHHHHHHHHHHHhCCCc-EEEEEEEECCCCCCHHHHHHHHHHHHHcCCceEEEec
Confidence 56554444333 58888887 46789999999999885433 6779999999988999999999999999888888766
Q ss_pred CCCCCCC--------CCCcc--ccCCHHHHHHHHHHHHHhhhhhhc
Q 017200 312 YMRPSKR--------HMPVS--EYITPEAFERYRALGMEMGFRYVA 347 (375)
Q Consensus 312 Yl~P~~~--------~~~v~--~~v~pe~~~~l~~~a~~~gf~~~~ 347 (375)
|- |-.. ..++. ...+++..+.+++++.+.|+.++.
T Consensus 167 yh-~~g~~Ky~~lg~~y~~~~~~~~~~~~l~~~~~~~~~~gl~~~i 211 (213)
T PRK10076 167 FH-QYGEPKYRLLGKTWSMKEVPAPSSADVATMREMAERAGFQVTV 211 (213)
T ss_pred CC-ccchhHHHHcCCcCccCCCCCcCHHHHHHHHHHHHHcCCeEEe
Confidence 63 3110 11221 224567888899999998987653
No 147
>COG1533 SplB DNA repair photolyase [DNA replication, recombination, and repair]
Probab=98.14 E-value=0.00013 Score=71.80 Aligned_cols=170 Identities=17% Similarity=0.240 Sum_probs=106.7
Q ss_pred eCCccCCCCcCCCCCCCCC--CC---CCCcch-HHHHHHH-HHhcCC--cEEEEEeeeCCCCCcccHHHHHHHHHHHHHh
Q 017200 135 LGDTCTRGCRFCNVKTSRA--PP---PPDPDE-PTNVAEA-IASWGL--DYVVITSVDRDDLADQGSGHFAQTVRKLKEL 205 (375)
Q Consensus 135 i~d~C~~~C~FC~v~~~r~--~~---~ld~eE-i~~~a~a-l~~~G~--~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~ 205 (375)
..-||..+|.||-...... +. .+..++ +.+.++. +.+.|- ..|.+.+...+..|..-...+..-+..+...
T Consensus 35 py~GC~h~C~YCYa~~~~~~~~~~~~~v~vk~n~~e~l~~el~~~~~k~~~i~is~~TDpyqp~E~~~~ltR~ilei~~~ 114 (297)
T COG1533 35 PYRGCSHGCIYCYARPMHGYLPKSPTKVNVKENLLELLERELRKPGPKRTVIAISSVTDPYQPIEKEYRLTRKILEILLK 114 (297)
T ss_pred CcCCCCCCCceeecccccccccCCCceeeechhHHHHHHHHHhhccCCceEEEEecCCCCCCcchHHHHHHHHHHHHHHH
Confidence 3569999999998875321 11 135555 5555544 443333 4555555555555632112222222223222
Q ss_pred C-CCcEEEeecCCCCCChHHHHHHHHcCcccccccccchH-HHHHHhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEE
Q 017200 206 K-PNMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETVE-ELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIML 283 (375)
Q Consensus 206 ~-p~i~Ie~l~pd~~g~~e~l~~L~~aGldv~~hnlEtv~-rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~tkt~imv 283 (375)
+ ..+.|..=++-...|.+.|..+..-+.-.+...+-|.+ ++-+.+-|+-.+.+.++++++.+.+ .|+ .+++++
T Consensus 115 ~~~~v~I~TKS~lv~RDld~l~~~~~~~~v~V~~Sitt~d~~l~k~~EP~apsp~~Ri~al~~l~e---aGi--~~~v~v 189 (297)
T COG1533 115 YGFPVSIVTKSALVLRDLDLLLELAERGKVRVAVSITTLDEELAKILEPRAPSPEERLEALKELSE---AGI--PVGLFV 189 (297)
T ss_pred cCCcEEEEECCcchhhhHHHHHhhhhccceEEEEEeecCcHHHHHhcCCCCcCHHHHHHHHHHHHH---CCC--eEEEEE
Confidence 2 12344332232223556777776665555666666655 6888888888899999999999999 685 556666
Q ss_pred e--c-CCCHHHHHHHHHHHHHcCCcEEee
Q 017200 284 G--C-GETPDQVVSTMEKVRAAGVDVMTF 309 (375)
Q Consensus 284 G--l-GET~ee~~etl~~Lrelgvd~v~i 309 (375)
+ + |.+|+|+.+.+..+.+.|+..+..
T Consensus 190 ~PIiP~~~d~e~e~~l~~~~~ag~~~v~~ 218 (297)
T COG1533 190 APIIPGLNDEELERILEAAAEAGARVVVY 218 (297)
T ss_pred ecccCCCChHHHHHHHHHHHHcCCCeeEe
Confidence 5 3 889999999999999999987665
No 148
>COG1509 KamA Lysine 2,3-aminomutase [Amino acid transport and metabolism]
Probab=97.99 E-value=0.00022 Score=71.23 Aligned_cols=179 Identities=18% Similarity=0.323 Sum_probs=116.5
Q ss_pred ChhhhhhhcCCCCcccccCCCCCCccEEEEeeeCCccCCCCcCCCCCCCCCC--CCCCcchHHHHHHHHHhc-CCcEEEE
Q 017200 103 KLHTVCEEAKCPNLGECWSGGETGTATATIMILGDTCTRGCRFCNVKTSRAP--PPPDPDEPTNVAEAIASW-GLDYVVI 179 (375)
Q Consensus 103 ~L~tvceeA~cpn~~ec~~~~~~~~~tatfm~i~d~C~~~C~FC~v~~~r~~--~~ld~eEi~~~a~al~~~-G~~eIvL 179 (375)
...-++|...+|--+- -|-+.....|+.+++|.-.|+||--+..-+. ..+.++++....+.+++. -+++|+|
T Consensus 90 ~~Dpl~E~~~s~Vpgl-----~HrY~drvLll~t~~C~vyCRyCfRr~~~~~~~~~~~~~~~~~al~YIa~hPeI~eVll 164 (369)
T COG1509 90 SEDPLGEDDSSPVPGL-----THRYPDRVLLLVTGVCAVYCRYCFRRRFVGQDNQGFNKEEWDKALDYIAAHPEIREVLL 164 (369)
T ss_pred ccCcccccccCCCCCc-----eeecCCeEEEEecCcccceeeecccccccccccccCCHHHHHHHHHHHHcCchhheEEe
Confidence 3445666666655441 1235567788899999999999987764222 126788888888888776 4699999
Q ss_pred EeeeCCCCCcccHHHHHHHHHHHHHhCCC---cEEEe----ecCCCCCChHHHHHHHHcCcccc--cccccchHHHHHHh
Q 017200 180 TSVDRDDLADQGSGHFAQTVRKLKELKPN---MLIEA----LVPDFRGNNGCVREVAKSGLNVF--AHNIETVEELQSAV 250 (375)
Q Consensus 180 Tsgdr~dl~d~G~~~~~~lir~Ik~~~p~---i~Ie~----l~pd~~g~~e~l~~L~~aGldv~--~hnlEtv~rl~~~m 250 (375)
||||---+.| ..+..++++|++. |. ++|.. +.|.-+ +++.++.|.+++..++ .| +....++.+..
T Consensus 165 SGGDPL~ls~---~~L~~ll~~L~~I-pHv~iiRi~TR~pvv~P~RI-t~~L~~~l~~~~~~v~~~tH-~NHp~Eit~e~ 238 (369)
T COG1509 165 SGGDPLSLSD---KKLEWLLKRLRAI-PHVKIIRIGTRLPVVLPQRI-TDELCEILGKSRKPVWLVTH-FNHPNEITPEA 238 (369)
T ss_pred cCCCccccCH---HHHHHHHHHHhcC-CceeEEEeecccceechhhc-cHHHHHHHhccCceEEEEcc-cCChhhcCHHH
Confidence 9999776765 4567777777654 33 34433 334322 5677777777555442 22 22233443333
Q ss_pred cCCCCCHHHHHHHHHHHHHhCCCCceE--EEeEEEecCCCHHHHHHHHHHHHHcCCc
Q 017200 251 RDHRANFKQSLDVLMMAKDYVPAGTLT--KTSIMLGCGETPDQVVSTMEKVRAAGVD 305 (375)
Q Consensus 251 r~r~~s~~~~l~vl~~ak~~~p~Gl~t--kt~imvGlGET~ee~~etl~~Lrelgvd 305 (375)
+ +.++.+++ .|+.+ -|=++=|...+.+-+.+.++.|-++|+-
T Consensus 239 ~----------~A~~~L~~---aGv~l~NQsVLLrGVND~~evl~~L~~~L~~~gV~ 282 (369)
T COG1509 239 R----------EACAKLRD---AGVPLLNQSVLLRGVNDDPEVLKELSRALFDAGVK 282 (369)
T ss_pred H----------HHHHHHHH---cCceeecchheecccCCCHHHHHHHHHHHHHcCCc
Confidence 2 55566666 46644 4456668898999999999999999964
No 149
>COG0641 AslB Arylsulfatase regulator (Fe-S oxidoreductase) [General function prediction only]
Probab=97.86 E-value=0.0016 Score=66.21 Aligned_cols=189 Identities=13% Similarity=0.140 Sum_probs=121.6
Q ss_pred CCc-cCCCCcCCCCCCCCCCC-CCCcchHHHHHHHHHhc-CCcE--EEEEeeeCCCCCcccHHHHHHHHHHHHHhC-CCc
Q 017200 136 GDT-CTRGCRFCNVKTSRAPP-PPDPDEPTNVAEAIASW-GLDY--VVITSVDRDDLADQGSGHFAQTVRKLKELK-PNM 209 (375)
Q Consensus 136 ~d~-C~~~C~FC~v~~~r~~~-~ld~eEi~~~a~al~~~-G~~e--IvLTsgdr~dl~d~G~~~~~~lir~Ik~~~-p~i 209 (375)
+.. |+.+|.||-........ .++.+.+++.++.+.+. +.+. |...||..- |. ...|.+.+..+.+++ .+.
T Consensus 14 t~~~CNL~C~YC~~~~~~~~~~~Ms~etle~~i~~~~~~~~~~~v~~~w~GGEPl-L~---~~~f~~~~~~l~~k~~~~~ 89 (378)
T COG0641 14 TGFECNLDCKYCFYLEKESLQRIMSDETLEEYVRQYIAASNGDKVTFTWQGGEPL-LA---GLDFYRKAVALQQKYANGK 89 (378)
T ss_pred ccCccCCCCCeeCcccCCCCCCCCCHHHHHHHHHHHHhhCCCCeeEEEEECCccc-cc---hHHHHHHHHHHHHHHhcCC
Confidence 344 99999999988643222 48888888888887655 4466 777788632 21 123445555544433 244
Q ss_pred EEE--eecCCCCCChHHHHHHHHcCcccccccccchHHHHHHhc---CCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEe
Q 017200 210 LIE--ALVPDFRGNNGCVREVAKSGLNVFAHNIETVEELQSAVR---DHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLG 284 (375)
Q Consensus 210 ~Ie--~l~pd~~g~~e~l~~L~~aGldv~~hnlEtv~rl~~~mr---~r~~s~~~~l~vl~~ak~~~p~Gl~tkt~imvG 284 (375)
.|. +.+-...-+++..+.|++.+. .+...||..+++..+.| ..+.|++..++-|+.+++. ++.+.+.+.
T Consensus 90 ~i~~siqTNg~LL~~e~~e~l~~~~~-~IgISiDGp~eihD~~R~~~~GkgTfd~i~~~i~~L~~~---~v~~~~~~v-- 163 (378)
T COG0641 90 TISNALQTNGTLLNDEWAEFLAEHDF-LIGISIDGPEEIHDKYRVTKSGKGTFDRVMKGLELLQAH---GVDFNTLTV-- 163 (378)
T ss_pred eeEEEEEEcccccCHHHHHHHHhcCc-eEEEeccCchHhccccccCCCCCccHHHHHHHHHHHHHc---CCcEEEEEE--
Confidence 444 222222227888999999998 78888888766666655 2478899999999999993 455555555
Q ss_pred c-CCCHHHHHHHHHHHHHcCCcEEeeecCCCCCCCCC-C-ccccCCHHHHHHHH
Q 017200 285 C-GETPDQVVSTMEKVRAAGVDVMTFGQYMRPSKRHM-P-VSEYITPEAFERYR 335 (375)
Q Consensus 285 l-GET~ee~~etl~~Lrelgvd~v~i~qYl~P~~~~~-~-v~~~v~pe~~~~l~ 335 (375)
+ -++.+...+.+++|.+.+...+-|.+-+ +..... + ....++++++..+.
T Consensus 164 v~~~n~~~~~ei~~~l~~~g~~~i~fip~~-~~~~~~~~~~~~~~~~~~~~~fl 216 (378)
T COG0641 164 VNRQNVLHPEEIYHFLKSEGSKFIQFIPLV-ESDNRGDSLLEFSVTAEEYGQFL 216 (378)
T ss_pred EchhHhhCHHHHHHHHHHcccceEEEEecc-cCCCCCccccccccCHHHHHHHH
Confidence 4 6778888888899999986666552222 222222 2 23446676655543
No 150
>PF13353 Fer4_12: 4Fe-4S single cluster domain; PDB: 3C8F_A 3CB8_A 3T7V_A 2YX0_A 3CAN_A.
Probab=97.83 E-value=5.1e-05 Score=65.00 Aligned_cols=70 Identities=16% Similarity=0.323 Sum_probs=46.8
Q ss_pred CCccCCCCcCCCCCCCCCCC---CCCcchHHHHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCC
Q 017200 136 GDTCTRGCRFCNVKTSRAPP---PPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKP 207 (375)
Q Consensus 136 ~d~C~~~C~FC~v~~~r~~~---~ld~eEi~~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p 207 (375)
+++|+.+|.||..+...... .++.+.+.+.++.+.+.++..|.++||+ |-+. .+...+.++++.+++..+
T Consensus 12 t~~Cnl~C~yC~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~i~l~GGE-Pll~-~~~~~l~~i~~~~k~~~~ 84 (139)
T PF13353_consen 12 TNGCNLRCKYCFNSEIWKFKRGKELSEEIIEEIIEELKNYGIKGIVLTGGE-PLLH-ENYDELLEILKYIKEKFP 84 (139)
T ss_dssp EC--SB--TT-TTCCCS-TT-SEEC-HHHHHHHCHHHCCCCCCEEEEECST-GGGH-HSHHHHHHHHHHHHHTT-
T ss_pred cCcccccCcCcCCcccCcccccccccchhhhhhhhHHhcCCceEEEEcCCC-eeee-ccHhHHHHHHHHHHHhCC
Confidence 78899999999876543221 2676777777888888999999999987 3331 125779999999999876
No 151
>TIGR03365 Bsubt_queE 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE. This uncharacterized enzyme, designated QueE, participates in the biosynthesis, from GTP, of 7-cyano-7-deazaguanosine, also called preQ0 because in many species it is a precursor of queuosine. In most Archaea, it is instead the precursor of a different tRNA modified base, archaeosine.
Probab=97.77 E-value=0.00034 Score=66.51 Aligned_cols=132 Identities=10% Similarity=0.072 Sum_probs=79.7
Q ss_pred EEEEeeeCCccCCCCcCCCCCCCC--CC--C--CCCcchHHHHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHH
Q 017200 129 TATIMILGDTCTRGCRFCNVKTSR--AP--P--PPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKL 202 (375)
Q Consensus 129 tatfm~i~d~C~~~C~FC~v~~~r--~~--~--~ld~eEi~~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~I 202 (375)
.+.|+ -..+|+.+|.||..+..- .. . .++.+|+++.++.+...|++.|+||||+---. .++.++++.+
T Consensus 23 ~~~Fv-R~~gCNlrC~~Cdt~~~~~~~~~~~~~~~s~~ei~~~i~~~~~~~~~~V~lTGGEPll~-----~~l~~li~~l 96 (238)
T TIGR03365 23 KTMFV-RTGGCDYRCSWCDSLFTWDGSAKDTWRPMTAEEVWQELKALGGGTPLHVSLSGGNPALQ-----KPLGELIDLG 96 (238)
T ss_pred eEEEE-EeCCcCCcCcCCCCccccCcccCCccccCCHHHHHHHHHHHhCCCCCeEEEeCCchhhh-----HhHHHHHHHH
Confidence 34444 467999999999876421 11 1 27889999998888777899999999973211 2477888888
Q ss_pred HHhCCCcEEEeecCCCCCChHHHHHHHHcCcccccccccchHHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEE
Q 017200 203 KELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIM 282 (375)
Q Consensus 203 k~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGldv~~hnlEtv~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~tkt~im 282 (375)
++. ++.+.+.+-... ..+ .+.+ +|.+...+...+. . ....++...+.++.+++ |..+...++
T Consensus 97 ~~~--g~~v~leTNGtl-~~~---~l~~--~d~v~vs~K~~~s-----g-~~~~~~~~~~~ik~l~~----~~~~~vK~V 158 (238)
T TIGR03365 97 KAK--GYRFALETQGSV-WQD---WFRD--LDDLTLSPKPPSS-----G-METDWQALDDCIERLDD----GPQTSLKVV 158 (238)
T ss_pred HHC--CCCEEEECCCCC-cHH---HHhh--CCEEEEeCCCCCC-----C-CCCcHHHHHHHHHHhhh----cCceEEEEE
Confidence 875 455554443221 112 2322 4444443332211 1 12347777777777776 245556666
Q ss_pred Ee
Q 017200 283 LG 284 (375)
Q Consensus 283 vG 284 (375)
|+
T Consensus 159 v~ 160 (238)
T TIGR03365 159 VF 160 (238)
T ss_pred EC
Confidence 66
No 152
>COG1625 Fe-S oxidoreductase, related to NifB/MoaA family [Energy production and conversion]
Probab=97.74 E-value=0.00063 Score=69.08 Aligned_cols=142 Identities=15% Similarity=0.197 Sum_probs=107.1
Q ss_pred HHHHHHHHHHHhC--CCcEEEeecCCCCCChHHHHHHHHcCcccccccccch-HHHHHHhcCCCCCHHHHHHHHHHHHHh
Q 017200 194 HFAQTVRKLKELK--PNMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETV-EELQSAVRDHRANFKQSLDVLMMAKDY 270 (375)
Q Consensus 194 ~~~~lir~Ik~~~--p~i~Ie~l~pd~~g~~e~l~~L~~aGldv~~hnlEtv-~rl~~~mr~r~~s~~~~l~vl~~ak~~ 270 (375)
|+.+.++.....+ +++++.-+.+.+.-+.+..+.+.++|+|-+...+.|. +++++++- +....++.++.|+...+
T Consensus 95 ~le~~~~r~~~~~~d~~~rL~~tsG~~~~lt~~~~~i~~~gvdev~~SVhtT~p~lR~klm-~n~~A~~~le~L~~f~~- 172 (414)
T COG1625 95 DLEPRGRRARLYYKDDDIRLSFTSGSGFTLTNRAERIIDAGVDEVYFSVHTTNPELRAKLM-KNPNAEQLLELLRRFAE- 172 (414)
T ss_pred chhhhhhHHHhhcCCccceeeeeeccceeccchHHHHHHcCCCeeEEEEeeCCHHHHHHHh-cCCcHHHHHHHHHHHHH-
Confidence 3567777777665 4467777777665577888889999999999988754 59998876 57788999999999988
Q ss_pred CCCCceEEEeEEEecCCC-HHHHHHHHHHHHHcCCcEEeeecCCCC---CCCCCCccccCCHHHHHHHHHHHHH
Q 017200 271 VPAGTLTKTSIMLGCGET-PDQVVSTMEKVRAAGVDVMTFGQYMRP---SKRHMPVSEYITPEAFERYRALGME 340 (375)
Q Consensus 271 ~p~Gl~tkt~imvGlGET-~ee~~etl~~Lrelgvd~v~i~qYl~P---~~~~~~v~~~v~pe~~~~l~~~a~~ 340 (375)
.++.+-+.+++==|=+ -+++.+|+.+|.+.|...+.+.. ..| +.-..++.+.++|++.+++++++++
T Consensus 173 --~~~~v~a~iVl~PGvNdge~L~kT~~dL~~~g~~~~~~~~-~~pvGlt~~n~~~i~~~t~~~l~~~k~i~re 243 (414)
T COG1625 173 --RCIEVHAQIVLCPGVNDGEELEKTLEDLEEWGAHEVILMR-VVPVGLTRYNRPGIRPPTPHELEEFKEIVRE 243 (414)
T ss_pred --hhhheeeEEEEcCCcCcHHHHHHHHHHHHHhCcCceeEEE-eecceeeecCCCCCCCCCHHHHHHHHHHHHH
Confidence 4567888888755766 88999999999999987666643 235 2222336677889888888766554
No 153
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=97.62 E-value=0.0013 Score=64.32 Aligned_cols=141 Identities=19% Similarity=0.266 Sum_probs=105.2
Q ss_pred CCCcchHHHHHHHHHhcCCcEEEEEeeeCCC-CCcccHHHHHHHHHHHHHhCCCcEEEeecCCCCCChHHHHHHHHcCcc
Q 017200 156 PPDPDEPTNVAEAIASWGLDYVVITSVDRDD-LADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLN 234 (375)
Q Consensus 156 ~ld~eEi~~~a~al~~~G~~eIvLTsgdr~d-l~d~G~~~~~~lir~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGld 234 (375)
.++.++.++.++.+.+.|+++|-+++-..+. .|..+ .-.+.++.|.+ .++..+..+.+ +.+.++...++|+|
T Consensus 22 ~~s~e~k~~ia~~L~~~Gv~~IEvgsf~~p~~~p~~~--d~~e~~~~l~~-~~~~~~~~l~~----~~~~ie~A~~~g~~ 94 (287)
T PRK05692 22 FIPTADKIALIDRLSAAGLSYIEVASFVSPKWVPQMA--DAAEVMAGIQR-RPGVTYAALTP----NLKGLEAALAAGAD 94 (287)
T ss_pred CcCHHHHHHHHHHHHHcCCCEEEeCCCcCcccccccc--cHHHHHHhhhc-cCCCeEEEEec----CHHHHHHHHHcCCC
Confidence 4899999999999999999999988665554 33311 12467777765 46677777765 56778999999999
Q ss_pred cccccccchHH-HHHHhcCCCCCHHHH----HHHHHHHHHhCCCCceEEEeEEEecC---C---CHHHHHHHHHHHHHcC
Q 017200 235 VFAHNIETVEE-LQSAVRDHRANFKQS----LDVLMMAKDYVPAGTLTKTSIMLGCG---E---TPDQVVSTMEKVRAAG 303 (375)
Q Consensus 235 v~~hnlEtv~r-l~~~mr~r~~s~~~~----l~vl~~ak~~~p~Gl~tkt~imvGlG---E---T~ee~~etl~~Lrelg 303 (375)
.+...+.+++. ....++ .+.++. .++++.+++ .|+.+..+|+.-+| + +++.+.+..+.+.+.|
T Consensus 95 ~v~i~~~~s~~~~~~n~~---~~~~e~l~~~~~~v~~ak~---~g~~v~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~G 168 (287)
T PRK05692 95 EVAVFASASEAFSQKNIN---CSIAESLERFEPVAEAAKQ---AGVRVRGYVSCVLGCPYEGEVPPEAVADVAERLFALG 168 (287)
T ss_pred EEEEEEecCHHHHHHHhC---CCHHHHHHHHHHHHHHHHH---cCCEEEEEEEEEecCCCCCCCCHHHHHHHHHHHHHcC
Confidence 99888777773 344443 456664 456677777 57888888887664 2 6788999999999999
Q ss_pred CcEEee
Q 017200 304 VDVMTF 309 (375)
Q Consensus 304 vd~v~i 309 (375)
++.|.|
T Consensus 169 ~d~i~l 174 (287)
T PRK05692 169 CYEISL 174 (287)
T ss_pred CcEEEe
Confidence 999887
No 154
>PF13394 Fer4_14: 4Fe-4S single cluster domain; PDB: 1TV8_B 1TV7_A 2FB2_A 2FB3_A.
Probab=97.62 E-value=6.3e-05 Score=62.98 Aligned_cols=80 Identities=20% Similarity=0.315 Sum_probs=44.6
Q ss_pred eCCccCCCCcCCCCCCCCCC---CCCCcchHHHHHHHHHhcCC--cEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCCCc
Q 017200 135 LGDTCTRGCRFCNVKTSRAP---PPPDPDEPTNVAEAIASWGL--DYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNM 209 (375)
Q Consensus 135 i~d~C~~~C~FC~v~~~r~~---~~ld~eEi~~~a~al~~~G~--~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p~i 209 (375)
.+++|+.+|.||........ ..++.+++.+.++.+...+. ..|.||||+.-=..+ ...+.++++.+++..|.+
T Consensus 4 ~t~~Cnl~C~~C~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~v~~~GGEPll~~~--~~~l~~~i~~~~~~~~~~ 81 (119)
T PF13394_consen 4 RTSGCNLRCSYCYNKSSWSPKKGEEMSIEELEEIIDELKEKGFRPSTVVFTGGEPLLYLN--PEDLIELIEYLKERGPEI 81 (119)
T ss_dssp --S--S---TTTS-TTTSST-GGGS--HHHHHHHHHHHHHTT----EEEEESSSGGGSTT--HHHHHHHHCTSTT-----
T ss_pred ccCCcCCCCccCCcCccCCCccCCcccHhHHHHHHHHHHhcCCceEEEEEECCCCccccC--HHHHHHHHHHHHhhCCCc
Confidence 47899999999997543211 23788889898888888877 679999986321122 456888998888887777
Q ss_pred EEEeecC
Q 017200 210 LIEALVP 216 (375)
Q Consensus 210 ~Ie~l~p 216 (375)
.|.+.+-
T Consensus 82 ~i~i~TN 88 (119)
T PF13394_consen 82 KIRIETN 88 (119)
T ss_dssp EEEEEE-
T ss_pred eEEEEeC
Confidence 7777664
No 155
>TIGR02826 RNR_activ_nrdG3 anaerobic ribonucleoside-triphosphate reductase activating protein. Members of this family represent a set of proteins related to, yet architecturally different from, the activating protein for the glycine radical-containing, oxygen-sensitive ribonucleoside-triphosphate reductase (RNR) as described in model TIGR02491. Members of this family are found paired with members of a similarly divergent set of anaerobic ribonucleoside-triphosphate reductases. Identification of this protein as an RNR activitating protein is partly from pairing with a candidate RNR. It is further supported by our finding that upstream of these operons are examples of a conserved regulatory element (described Rodionov and Gelfand) that is found in nearly all bacteria and that occurs specifically upstream of operons for all three classes of RNR genes.
Probab=97.60 E-value=0.00046 Score=61.18 Aligned_cols=96 Identities=13% Similarity=0.140 Sum_probs=63.9
Q ss_pred EEEEeeeCCccCCCCcCCCCCCC-CC--CCCCCcchHHHHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHh
Q 017200 129 TATIMILGDTCTRGCRFCNVKTS-RA--PPPPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKEL 205 (375)
Q Consensus 129 tatfm~i~d~C~~~C~FC~v~~~-r~--~~~ld~eEi~~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~ 205 (375)
..++++.-.+|+.+|.||.-+.. .. ...++.+++.+.++... ..+..|+||||+ +- .+.+.++++.+++.
T Consensus 15 ~~~~~vfl~GCnlrC~~C~n~~~~~~~~g~~lt~eel~~~I~~~~-~~~~gVt~SGGE---l~---~~~l~~ll~~lk~~ 87 (147)
T TIGR02826 15 EYSLAFYITGCPLGCKGCHSPESWHLSEGTKLTPEYLTKTLDKYR-SLISCVLFLGGE---WN---REALLSLLKIFKEK 87 (147)
T ss_pred CEEEEEEeCCCCCCCCCCCChHHcCCCCCcCCCHHHHHHHHHHhC-CCCCEEEEechh---cC---HHHHHHHHHHHHHC
Confidence 45666666799999999988754 21 23588899988877764 246899999999 22 45688999999876
Q ss_pred CCCcEEEeecCCCCCChHHHHHHHHcCcccc
Q 017200 206 KPNMLIEALVPDFRGNNGCVREVAKSGLNVF 236 (375)
Q Consensus 206 ~p~i~Ie~l~pd~~g~~e~l~~L~~aGldv~ 236 (375)
++.+.+.+.-. .++..+.+.+. +|.+
T Consensus 88 --Gl~i~l~Tg~~--~~~~~~~il~~-iD~l 113 (147)
T TIGR02826 88 --GLKTCLYTGLE--PKDIPLELVQH-LDYL 113 (147)
T ss_pred --CCCEEEECCCC--CHHHHHHHHHh-CCEE
Confidence 45555555432 23344444332 4443
No 156
>COG0820 Predicted Fe-S-cluster redox enzyme [General function prediction only]
Probab=97.42 E-value=0.0064 Score=60.96 Aligned_cols=170 Identities=13% Similarity=0.206 Sum_probs=99.8
Q ss_pred CCccCCCCcCCCCCCCCCCCCCCcchHHHHHHHHHh-cC------CcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhC-C
Q 017200 136 GDTCTRGCRFCNVKTSRAPPPPDPDEPTNVAEAIAS-WG------LDYVVITSVDRDDLADQGSGHFAQTVRKLKELK-P 207 (375)
Q Consensus 136 ~d~C~~~C~FC~v~~~r~~~~ld~eEi~~~a~al~~-~G------~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~-p 207 (375)
+=||.-+|+||+.....--.-|+..||+..+..+.+ .| +..||+-|---|-+ ..+.....++.+.... .
T Consensus 108 QvGC~~~C~FCaTg~~G~~RNLs~~EIv~Qv~~~~~~~~~~~~~~i~NVV~MGMGEPl~---N~dnV~~a~~i~~~~~G~ 184 (349)
T COG0820 108 QVGCPVGCTFCATGQGGLNRNLSAGEIVEQVLLAAKALGEDFGRRISNVVFMGMGEPLL---NLDNVVKALEIINDDEGL 184 (349)
T ss_pred CCCcCCCCCeeccccccceeccCHHHHHHHHHHHHHhcCccccceeeeEEEecCCchhh---hHHHHHHHHHhhcCcccc
Confidence 569999999999876432224899999988877652 22 45677766433311 1333333343333221 1
Q ss_pred Cc---EEEeecCCCCCChHHHHHHHHcCccc-ccccccch-HHHHHHhcC--CCCCHHHHHHHHHHHHHhCCCCceEEEe
Q 017200 208 NM---LIEALVPDFRGNNGCVREVAKSGLNV-FAHNIETV-EELQSAVRD--HRANFKQSLDVLMMAKDYVPAGTLTKTS 280 (375)
Q Consensus 208 ~i---~Ie~l~pd~~g~~e~l~~L~~aGldv-~~hnlEtv-~rl~~~mr~--r~~s~~~~l~vl~~ak~~~p~Gl~tkt~ 280 (375)
++ +|-+++..+ ...+.++.+..+++ ++.++.+. ++++..+-| ++++.+..++.++.-.+.....+..-=.
T Consensus 185 ~ls~R~iTvSTsGi---~~~I~~l~~~~~~v~LAiSLHa~nd~lR~~L~Pink~~~~e~l~~a~r~Y~~~t~~rVt~EY~ 261 (349)
T COG0820 185 GLSKRRITVSTSGI---VPRIRKLADEQLGVALAISLHAPNDELRDQLMPINKKYPIEELLEAIRYYPEKSGRRVTFEYV 261 (349)
T ss_pred cccceEEEEecCCC---chhHHHHHhhcCCeEEEEecCCCCHHHHhhhhccccCCCHHHHHHHHHhhhhccCceEEEEee
Confidence 12 233344333 34566676544443 45556654 477766554 5777788888877776654322333444
Q ss_pred EEEecCCCHHHHHHHHHHHHHcCCcEEeeecC
Q 017200 281 IMLGCGETPDQVVSTMEKVRAAGVDVMTFGQY 312 (375)
Q Consensus 281 imvGlGET~ee~~etl~~Lrelgvd~v~i~qY 312 (375)
+|=|.-...|+-.+..+.|+.+.+ .|.+-+|
T Consensus 262 Ll~~VND~~e~A~~L~~ll~~~~~-~VNLIP~ 292 (349)
T COG0820 262 LLDGVNDSLEHAKELAKLLKGIPC-KVNLIPY 292 (349)
T ss_pred ecccccCCHHHHHHHHHHhcCCCc-eEEEeec
Confidence 555567778888888888888876 4444344
No 157
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=97.38 E-value=0.005 Score=59.87 Aligned_cols=144 Identities=19% Similarity=0.258 Sum_probs=103.1
Q ss_pred CCCcchHHHHHHHHHhcCCcEEEEEeeeCCC-CCcccHHHHHHHHHHHHHhCCCcEEEeecCCCCCChHHHHHHHHcCcc
Q 017200 156 PPDPDEPTNVAEAIASWGLDYVVITSVDRDD-LADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLN 234 (375)
Q Consensus 156 ~ld~eEi~~~a~al~~~G~~eIvLTsgdr~d-l~d~G~~~~~~lir~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGld 234 (375)
.++.++-++.++++.+.|+++|-+.+.-.+. .|-. ....++++.|... ++..+.++.+ +.+.++...++|++
T Consensus 16 ~~s~e~K~~i~~~L~~~Gv~~IEvGs~~~~~~~p~~--~d~~~~~~~l~~~-~~~~~~~~~~----~~~dv~~A~~~g~~ 88 (274)
T cd07938 16 FIPTEDKIELIDALSAAGLRRIEVTSFVSPKWVPQM--ADAEEVLAGLPRR-PGVRYSALVP----NLRGAERALAAGVD 88 (274)
T ss_pred CcCHHHHHHHHHHHHHcCCCEEEeCCCCCccccccc--CCHHHHHhhcccC-CCCEEEEECC----CHHHHHHHHHcCcC
Confidence 4889999999999999999999998664443 3321 1123456666543 4577777764 56779999999999
Q ss_pred cccccccchH-HHHHHhcC-CCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecC-----C-CHHHHHHHHHHHHHcCCcE
Q 017200 235 VFAHNIETVE-ELQSAVRD-HRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCG-----E-TPDQVVSTMEKVRAAGVDV 306 (375)
Q Consensus 235 v~~hnlEtv~-rl~~~mr~-r~~s~~~~l~vl~~ak~~~p~Gl~tkt~imvGlG-----E-T~ee~~etl~~Lrelgvd~ 306 (375)
.+...+.+++ .+...++. +....+...+.++.+++ .|+.+..+++.-+| . +.+.+++.++.+.+.|++.
T Consensus 89 ~i~i~~~~Sd~~~~~~~~~s~~~~~~~~~~~v~~ak~---~G~~v~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~Ga~~ 165 (274)
T cd07938 89 EVAVFVSASETFSQKNINCSIAESLERFEPVAELAKA---AGLRVRGYVSTAFGCPYEGEVPPERVAEVAERLLDLGCDE 165 (274)
T ss_pred EEEEEEecCHHHHHHHcCCCHHHHHHHHHHHHHHHHH---CCCeEEEEEEeEecCCCCCCCCHHHHHHHHHHHHHcCCCE
Confidence 9888777777 44445541 11233556667778888 57888888886663 3 5677889999999999999
Q ss_pred Eee
Q 017200 307 MTF 309 (375)
Q Consensus 307 v~i 309 (375)
|.+
T Consensus 166 i~l 168 (274)
T cd07938 166 ISL 168 (274)
T ss_pred EEE
Confidence 887
No 158
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=97.37 E-value=0.0089 Score=60.16 Aligned_cols=142 Identities=16% Similarity=0.196 Sum_probs=102.4
Q ss_pred CCCcchHHHHHHHHHhcCCcEEEEEeeeCCC-CCcccHHHHHHHHHHHHHhCCCcEEEeecCCCCCChHHHHHHHHcCcc
Q 017200 156 PPDPDEPTNVAEAIASWGLDYVVITSVDRDD-LADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLN 234 (375)
Q Consensus 156 ~ld~eEi~~~a~al~~~G~~eIvLTsgdr~d-l~d~G~~~~~~lir~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGld 234 (375)
.++.++-++.++.+.+.|+++|-+++.-.+. .|- ...-.+.++.|++ .++..+.++.+ +.+.++...++|++
T Consensus 64 ~~s~e~Ki~ia~~L~~~GV~~IEvGs~vspk~vPq--mad~~ev~~~i~~-~~~~~~~~l~~----n~~die~A~~~g~~ 136 (347)
T PLN02746 64 IVPTSVKVELIQRLVSSGLPVVEATSFVSPKWVPQ--LADAKDVMAAVRN-LEGARFPVLTP----NLKGFEAAIAAGAK 136 (347)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEECCCcCcccccc--cccHHHHHHHHHh-ccCCceeEEcC----CHHHHHHHHHcCcC
Confidence 4899999999999999999999988754432 232 1123456666655 34566666665 67889999999999
Q ss_pred cccccccchHHHH-HHhcCCCCCHHHHH----HHHHHHHHhCCCCceEEEeEEEecC-----C-CHHHHHHHHHHHHHcC
Q 017200 235 VFAHNIETVEELQ-SAVRDHRANFKQSL----DVLMMAKDYVPAGTLTKTSIMLGCG-----E-TPDQVVSTMEKVRAAG 303 (375)
Q Consensus 235 v~~hnlEtv~rl~-~~mr~r~~s~~~~l----~vl~~ak~~~p~Gl~tkt~imvGlG-----E-T~ee~~etl~~Lrelg 303 (375)
.+...+-+++... ..++ .+.++.+ ++++.+++ .|+.+..+|..-|| . +.+.+++.++.+.+.|
T Consensus 137 ~v~i~~s~Sd~h~~~n~~---~t~~e~l~~~~~~v~~Ak~---~Gl~v~~~is~~fg~p~~~r~~~~~l~~~~~~~~~~G 210 (347)
T PLN02746 137 EVAVFASASESFSKSNIN---CSIEESLVRYREVALAAKK---HSIPVRGYVSCVVGCPIEGPVPPSKVAYVAKELYDMG 210 (347)
T ss_pred EEEEEEecCHHHHHHHhC---CCHHHHHHHHHHHHHHHHH---cCCeEEEEEEeeecCCccCCCCHHHHHHHHHHHHHcC
Confidence 9888887777433 3333 4566666 47777777 57888877765443 2 4677889999999999
Q ss_pred CcEEeee
Q 017200 304 VDVMTFG 310 (375)
Q Consensus 304 vd~v~i~ 310 (375)
++.|.|.
T Consensus 211 ad~I~l~ 217 (347)
T PLN02746 211 CYEISLG 217 (347)
T ss_pred CCEEEec
Confidence 9998873
No 159
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=97.25 E-value=0.0068 Score=58.19 Aligned_cols=138 Identities=15% Similarity=0.194 Sum_probs=102.9
Q ss_pred CCCcchHHHHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCCCcEEEeecCCCCCChHHHHHHHHcCccc
Q 017200 156 PPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNV 235 (375)
Q Consensus 156 ~ld~eEi~~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGldv 235 (375)
.++.++..+.++.+.+.|+++|-+.. +...+ . -.+.++.|.+..++..+-++.. .+.+.++...++|++.
T Consensus 16 ~~~~~~k~~i~~~L~~~Gv~~iE~g~---p~~~~---~-~~e~~~~l~~~~~~~~~~~~~r---~~~~~v~~a~~~g~~~ 85 (259)
T cd07939 16 AFSREEKLAIARALDEAGVDEIEVGI---PAMGE---E-EREAIRAIVALGLPARLIVWCR---AVKEDIEAALRCGVTA 85 (259)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEec---CCCCH---H-HHHHHHHHHhcCCCCEEEEecc---CCHHHHHHHHhCCcCE
Confidence 48899999999999999999998852 22221 1 1356777776556666666642 2567789999999999
Q ss_pred ccccccchH-HHHHHhcCCCCCHHHH----HHHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcCCcEEee
Q 017200 236 FAHNIETVE-ELQSAVRDHRANFKQS----LDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTF 309 (375)
Q Consensus 236 ~~hnlEtv~-rl~~~mr~r~~s~~~~----l~vl~~ak~~~p~Gl~tkt~imvGlGET~ee~~etl~~Lrelgvd~v~i 309 (375)
+...+-+++ .+...++ .+.++. .+.++.+++ .|+.+.-+++.+..-+++.+.+.++.+.+.|++.|.+
T Consensus 86 i~i~~~~s~~~~~~~~~---~~~~~~~~~~~~~i~~a~~---~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~G~~~i~l 158 (259)
T cd07939 86 VHISIPVSDIHLAHKLG---KDRAWVLDQLRRLVGRAKD---RGLFVSVGAEDASRADPDFLIEFAEVAQEAGADRLRF 158 (259)
T ss_pred EEEEEecCHHHHHHHhC---CCHHHHHHHHHHHHHHHHH---CCCeEEEeeccCCCCCHHHHHHHHHHHHHCCCCEEEe
Confidence 888777776 5555655 344444 467778887 5787777777777778999999999999999999877
No 160
>COG5014 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=97.23 E-value=0.0022 Score=58.34 Aligned_cols=154 Identities=18% Similarity=0.231 Sum_probs=90.4
Q ss_pred CCccCCCCcCCCCCCCCCCC-----CCCcchHHHHHHHH-HhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCCCc
Q 017200 136 GDTCTRGCRFCNVKTSRAPP-----PPDPDEPTNVAEAI-ASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNM 209 (375)
Q Consensus 136 ~d~C~~~C~FC~v~~~r~~~-----~ld~eEi~~~a~al-~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p~i 209 (375)
+-||+..|.||-....+.+. -++|+|+.+...++ ++.|.+.+.|+|+.. - .|.+|+.++|+-+-.. ..
T Consensus 48 ~VGCnl~CayCw~y~r~~~~~rag~f~~P~eVaeRL~ei~K~~g~d~vRiSG~EP-~---l~~EHvlevIeLl~~~--tF 121 (228)
T COG5014 48 TVGCNLLCAYCWNYFRNLRPKRAGDFLSPEEVAERLLEISKKRGCDLVRISGAEP-I---LGREHVLEVIELLVNN--TF 121 (228)
T ss_pred ccccceeeHHhhhhhhcCCccccccccCHHHHHHHHHHHHHhcCCcEEEeeCCCc-c---ccHHHHHHHHHhccCc--eE
Confidence 34899999999875432221 26677766554443 678999999998753 2 2368999988776321 12
Q ss_pred EEEe--ecCCCCCChHHHHHHHHcCccc-ccccccch-HHHHHHhcCC-CCCHHHHHHHHHHHHHhCCCCceEEEeEEEe
Q 017200 210 LIEA--LVPDFRGNNGCVREVAKSGLNV-FAHNIETV-EELQSAVRDH-RANFKQSLDVLMMAKDYVPAGTLTKTSIMLG 284 (375)
Q Consensus 210 ~Ie~--l~pd~~g~~e~l~~L~~aGldv-~~hnlEtv-~rl~~~mr~r-~~s~~~~l~vl~~ak~~~p~Gl~tkt~imvG 284 (375)
.++. +.-.| |...+++|.+- +++ +-..+-.. ++-|.+|..- ..-+..-|+.|+.+++ .|+.+-.-+|.|
T Consensus 122 vlETNG~~~g~--drslv~el~nr-~nv~vRVsvKG~dpesF~kIT~asp~~F~~QL~aLr~L~~---~g~rf~pA~~~~ 195 (228)
T COG5014 122 VLETNGLMFGF--DRSLVDELVNR-LNVLVRVSVKGWDPESFEKITGASPEYFRYQLKALRHLHG---KGHRFWPAVVYD 195 (228)
T ss_pred EEEeCCeEEec--CHHHHHHHhcC-CceEEEEEecCCCHHHHHHHhcCChHHHHHHHHHHHHHHh---cCceeeehhhhc
Confidence 2221 11122 66677777652 221 22223333 3667777621 1115556888888887 688899999999
Q ss_pred c-CCCHHHHHHHHHHHHHcC
Q 017200 285 C-GETPDQVVSTMEKVRAAG 303 (375)
Q Consensus 285 l-GET~ee~~etl~~Lrelg 303 (375)
| -|.-+ .+..+.|-+.+
T Consensus 196 f~~Ed~~--k~Lak~Lgehp 213 (228)
T COG5014 196 FFREDGL--KELAKRLGEHP 213 (228)
T ss_pred cchhhhH--HHHHHHhccCC
Confidence 9 43322 23444554444
No 161
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=97.22 E-value=0.012 Score=56.87 Aligned_cols=142 Identities=15% Similarity=0.199 Sum_probs=103.2
Q ss_pred CCCcchHHHHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCCCcEEEeecCCCCCChHHHHHHHHcC---
Q 017200 156 PPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSG--- 232 (375)
Q Consensus 156 ~ld~eEi~~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aG--- 232 (375)
.++.++.+..++++.+.|+++|-+++... . ... .+.++.+.+..|+..+.++.. ++.+.++...++|
T Consensus 16 ~~~~~~k~~i~~~L~~~Gv~~iEvg~~~~---~---~~~-~~~~~~l~~~~~~~~~~~l~r---~~~~~v~~a~~~~~~~ 85 (268)
T cd07940 16 SLTPEEKLEIARQLDELGVDVIEAGFPAA---S---PGD-FEAVKRIAREVLNAEICGLAR---AVKKDIDAAAEALKPA 85 (268)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEeCCCC---C---HHH-HHHHHHHHHhCCCCEEEEEcc---CCHhhHHHHHHhCCCC
Confidence 47899999999999999999999875431 0 112 267788877678888887762 2456788888888
Q ss_pred -cccccccccchH-HHHHHhcC-CCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcCCcEEee
Q 017200 233 -LNVFAHNIETVE-ELQSAVRD-HRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTF 309 (375)
Q Consensus 233 -ldv~~hnlEtv~-rl~~~mr~-r~~s~~~~l~vl~~ak~~~p~Gl~tkt~imvGlGET~ee~~etl~~Lrelgvd~v~i 309 (375)
++.+....-+++ .+...++. +....+...+.++.+++ .|+.+.-+.+.+..=+++.+.+.++.+.++|++.|.+
T Consensus 86 ~~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~---~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~G~~~i~l 162 (268)
T cd07940 86 KVDRIHTFIATSDIHLKYKLKKTREEVLERAVEAVEYAKS---HGLDVEFSAEDATRTDLDFLIEVVEAAIEAGATTINI 162 (268)
T ss_pred CCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHH---cCCeEEEeeecCCCCCHHHHHHHHHHHHHcCCCEEEE
Confidence 888777666666 55555551 11234555677788888 5777776666665567888899999999999999877
Q ss_pred e
Q 017200 310 G 310 (375)
Q Consensus 310 ~ 310 (375)
.
T Consensus 163 ~ 163 (268)
T cd07940 163 P 163 (268)
T ss_pred C
Confidence 3
No 162
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=97.21 E-value=0.027 Score=54.46 Aligned_cols=138 Identities=15% Similarity=0.183 Sum_probs=100.2
Q ss_pred CCCcchHHHHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCCCcEEEeecCCCCCChHHHHHHHHcCccc
Q 017200 156 PPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNV 235 (375)
Q Consensus 156 ~ld~eEi~~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGldv 235 (375)
.++.++.++.++.+.+.|+++|-+.+. ... ....+.++.+.+......+-.+ ...+.+.++...++|++.
T Consensus 18 ~~s~~~k~~i~~~L~~~Gv~~IEvG~P---~~~----~~~~~~~~~l~~~~~~~~v~~~---~r~~~~di~~a~~~g~~~ 87 (262)
T cd07948 18 FFDTEDKIEIAKALDAFGVDYIELTSP---AAS----PQSRADCEAIAKLGLKAKILTH---IRCHMDDARIAVETGVDG 87 (262)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEECC---CCC----HHHHHHHHHHHhCCCCCcEEEE---ecCCHHHHHHHHHcCcCE
Confidence 489999999999999999999998862 221 2245556666543322333222 123678899999999999
Q ss_pred ccccccchHH-HHHHhcCCCCCHHH----HHHHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcCCcEEee
Q 017200 236 FAHNIETVEE-LQSAVRDHRANFKQ----SLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTF 309 (375)
Q Consensus 236 ~~hnlEtv~r-l~~~mr~r~~s~~~----~l~vl~~ak~~~p~Gl~tkt~imvGlGET~ee~~etl~~Lrelgvd~v~i 309 (375)
+...+-+++. +...++ .+.++ ..+.++.+++ .|+.+..+++-.++=+++++.+.++.+.++|++.+.+
T Consensus 88 i~i~~~~S~~~~~~~~~---~~~~e~~~~~~~~i~~a~~---~G~~v~~~~eda~r~~~~~l~~~~~~~~~~g~~~i~l 160 (262)
T cd07948 88 VDLVFGTSPFLREASHG---KSITEIIESAVEVIEFVKS---KGIEVRFSSEDSFRSDLVDLLRVYRAVDKLGVNRVGI 160 (262)
T ss_pred EEEEEecCHHHHHHHhC---CCHHHHHHHHHHHHHHHHH---CCCeEEEEEEeeCCCCHHHHHHHHHHHHHcCCCEEEE
Confidence 8877777773 333333 34555 4555577777 5799999999999878899999999999999998877
No 163
>TIGR03279 cyano_FeS_chp putative FeS-containing Cyanobacterial-specific oxidoreductase. Members of this protein family are predicted FeS-containing oxidoreductases of unknown function, apparently restricted to and universal across the Cyanobacteria. The high trusted cutoff score for this model, 700 bits, excludes homologs from other lineages. This exclusion seems justified because a significant number of sequence positions are simultaneously unique to and invariant across the Cyanobacteria, suggesting a specialized, conserved function, perhaps related to photosynthesis. A distantly related protein family, TIGR03278, in universal in and restricted to archaeal methanogens, and may be linked to methanogenesis.
Probab=97.18 E-value=0.0056 Score=63.06 Aligned_cols=78 Identities=8% Similarity=0.080 Sum_probs=61.7
Q ss_pred ChHHHHHHHHcCcccccccccch-HHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecCCCH-HHHHHHHHH
Q 017200 221 NNGCVREVAKSGLNVFAHNIETV-EELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETP-DQVVSTMEK 298 (375)
Q Consensus 221 ~~e~l~~L~~aGldv~~hnlEtv-~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~tkt~imvGlGET~-ee~~etl~~ 298 (375)
+++.++++.+.+++-++..+.+. ++++.+|- +.....+.++.++.+.+ .|+.+.+.+++==|=++ +++.+|+.+
T Consensus 127 ~~~d~~RI~~~~lspl~iSVhat~p~lR~~ll-~n~~a~~il~~l~~l~~---~~I~~h~qiVlcPGiNDg~~L~~Ti~d 202 (433)
T TIGR03279 127 PPAEWQRIEQLRLSPLYVSVHATEPSLRARLL-KNPRAGLILEQLKWFQE---RRLQLHAQVVVCPGINDGKHLERTLRD 202 (433)
T ss_pred CHHHHHHHHHcCCCCEEEEEecCCHHHHHHHh-CCCCHHHHHHHHHHHHH---cCCeEEEEEEEcCCcCCHHHHHHHHHH
Confidence 46677888888887777777754 58888876 45578999999999988 67888888877446666 788899999
Q ss_pred HHHc
Q 017200 299 VRAA 302 (375)
Q Consensus 299 Lrel 302 (375)
|.++
T Consensus 203 L~~~ 206 (433)
T TIGR03279 203 LAQF 206 (433)
T ss_pred HHhh
Confidence 9988
No 164
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=97.18 E-value=0.0086 Score=60.50 Aligned_cols=142 Identities=13% Similarity=0.199 Sum_probs=104.9
Q ss_pred CCCcchHHHHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCCCcEEEeecCCCCCChHHHHHHHHcCccc
Q 017200 156 PPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNV 235 (375)
Q Consensus 156 ~ld~eEi~~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGldv 235 (375)
.++.++.++.++.+.+.|+++|-+..-.. ++ .-.+.++.|.+..+...|..+.. .+.+.++...++|++.
T Consensus 18 ~~s~~~k~~ia~~L~~~Gv~~IEvG~p~~---~~----~~~e~i~~i~~~~~~~~v~~~~r---~~~~di~~a~~~g~~~ 87 (363)
T TIGR02090 18 SLTVEQKVEIARKLDELGVDVIEAGFPIA---SE----GEFEAIKKISQEGLNAEICSLAR---ALKKDIDKAIDCGVDS 87 (363)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEeCCCC---Ch----HHHHHHHHHHhcCCCcEEEEEcc---cCHHHHHHHHHcCcCE
Confidence 48999999999999999999998764322 11 12466777776666666666553 2678899999999999
Q ss_pred ccccccchH-HHHHHhcC-CCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcCCcEEeee
Q 017200 236 FAHNIETVE-ELQSAVRD-HRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFG 310 (375)
Q Consensus 236 ~~hnlEtv~-rl~~~mr~-r~~s~~~~l~vl~~ak~~~p~Gl~tkt~imvGlGET~ee~~etl~~Lrelgvd~v~i~ 310 (375)
+...+-+++ .+...++. +....+...+.++.|++ .|+.+..+++-..--+++.+.+.++.+.+.|++.|.+.
T Consensus 88 i~i~~~~Sd~~~~~~~~~~~~~~~~~~~~~i~~ak~---~G~~v~~~~eda~r~~~~~l~~~~~~~~~~g~~~i~l~ 161 (363)
T TIGR02090 88 IHTFIATSPIHLKYKLKKSRDEVLEKAVEAVEYAKE---HGLIVEFSAEDATRTDIDFLIKVFKRAEEAGADRINIA 161 (363)
T ss_pred EEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHH---cCCEEEEEEeecCCCCHHHHHHHHHHHHhCCCCEEEEe
Confidence 887777777 44445541 11234556678888888 57888877776666678999999999999999998774
No 165
>TIGR02491 NrdG anaerobic ribonucleoside-triphosphate reductase activating protein. This enzyme is a member of the radical-SAM family (pfam04055) and utilizes S-adenosyl methionine, an iron-sulfur cluster and a reductant (dihydroflavodoxin ) to produce a glycine-centered radical in the class III (anaerobic) ribonucleotide triphosphate reductase (NrdD, TIGR02487). The two components form an alpha-2/beta-2 heterodimer.
Probab=97.14 E-value=0.0033 Score=55.82 Aligned_cols=69 Identities=14% Similarity=0.178 Sum_probs=50.3
Q ss_pred CccCCCCcCCCCCCCC---CCCCCCcchHHHHHHHHHhcC-CcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCC
Q 017200 137 DTCTRGCRFCNVKTSR---APPPPDPDEPTNVAEAIASWG-LDYVVITSVDRDDLADQGSGHFAQTVRKLKELKP 207 (375)
Q Consensus 137 d~C~~~C~FC~v~~~r---~~~~ld~eEi~~~a~al~~~G-~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p 207 (375)
.+|+.+|.||.-+... ....++.+++.+.++.+.+.+ +..|.||||+--..++ .+.+.++++.+++..+
T Consensus 23 ~gCnl~C~~C~n~~~~~~~~g~~~~~~~~~~i~~~l~~~~~~~gVt~sGGEPllq~~--~~~l~~ll~~~k~~~~ 95 (154)
T TIGR02491 23 AGCKHHCEGCFNKETWNFNGGKEFTEALEKEIIRDLNDNPLIDGLTLSGGDPLYPRN--VEELIELVKKIKAEFP 95 (154)
T ss_pred CCCCCCCcCCCcccccCCCCCCcCCHHHHHHHHHHHHhcCCcCeEEEeChhhCCCCC--HHHHHHHHHHHHHhCC
Confidence 6899999999977532 123588777777777777775 6889999997432222 4678899999987644
No 166
>PRK11121 nrdG anaerobic ribonucleotide reductase-activating protein; Provisional
Probab=97.12 E-value=0.0028 Score=56.41 Aligned_cols=79 Identities=15% Similarity=0.183 Sum_probs=52.8
Q ss_pred CccCCCCcCCCCCCC-C--CCCCCCcchHHHHHHHHHhcCC--cEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCCCcEE
Q 017200 137 DTCTRGCRFCNVKTS-R--APPPPDPDEPTNVAEAIASWGL--DYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLI 211 (375)
Q Consensus 137 d~C~~~C~FC~v~~~-r--~~~~ld~eEi~~~a~al~~~G~--~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p~i~I 211 (375)
.+|+.+|.||.-+.. . .....+.+.+.+..+.+...+. ..|+||||+.- +. .....+.++++.+++..|+..|
T Consensus 24 ~GCnl~C~~C~n~~~~~~~~g~~~~~~~~~~il~~~~~~~~~~~gvt~sGGEPl-~~-~~~~~l~~l~~~~k~~~~~~~i 101 (154)
T PRK11121 24 SGCVHQCPGCYNKSTWRLNSGHPFTKEMEDQIIADLNDTRIKRQGLSLSGGDPL-HP-QNVPDILKLVQRVKAECPGKDI 101 (154)
T ss_pred CCCCCcCcCCCChhhccCCCCcccCHHHHHHHHHHHHHhCCCCCcEEEECCCcc-ch-hhHHHHHHHHHHHHHHCCCCCE
Confidence 899999999976642 1 1112454445555566666655 78999999742 22 1256788999999988877666
Q ss_pred EeecCC
Q 017200 212 EALVPD 217 (375)
Q Consensus 212 e~l~pd 217 (375)
-+.++-
T Consensus 102 ~~~tGy 107 (154)
T PRK11121 102 WVWTGY 107 (154)
T ss_pred EEecCC
Confidence 555553
No 167
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=97.04 E-value=0.032 Score=53.65 Aligned_cols=138 Identities=13% Similarity=0.109 Sum_probs=98.4
Q ss_pred CCCcchHHHHHHHHHhcCCcEEEEEeeeC-----CCCCcccHHHHHHHHHHHHHhCCCcEEEeecCCCCCChHHHHHHHH
Q 017200 156 PPDPDEPTNVAEAIASWGLDYVVITSVDR-----DDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAK 230 (375)
Q Consensus 156 ~ld~eEi~~~a~al~~~G~~eIvLTsgdr-----~dl~d~G~~~~~~lir~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~ 230 (375)
.++.++.+..++.+.+.|+++|-+..... .+....+.. =.+.++.+++..++..+.++...-.++.+.++...+
T Consensus 18 ~~~~~~k~~i~~~L~~~Gv~~iEvg~~~~~~~~~~~~~~~~~~-~~e~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~ 96 (263)
T cd07943 18 QFTLEQVRAIARALDAAGVPLIEVGHGDGLGGSSLNYGFAAHT-DEEYLEAAAEALKQAKLGVLLLPGIGTVDDLKMAAD 96 (263)
T ss_pred ecCHHHHHHHHHHHHHcCCCEEEeecCCCCCCcccccCCCCCC-hHHHHHHHHHhccCCEEEEEecCCccCHHHHHHHHH
Confidence 48899999999999999999999883211 000000111 135667776666777776654222235677899999
Q ss_pred cCcccccccccchHHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcCCcEEee
Q 017200 231 SGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTF 309 (375)
Q Consensus 231 aGldv~~hnlEtv~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~tkt~imvGlGET~ee~~etl~~Lrelgvd~v~i 309 (375)
+|+|.+.......+ .+...+.++.+|+ .|+.+..+++-...-+++.+.+.++.+.+.|++.|.+
T Consensus 97 ~g~~~iri~~~~s~------------~~~~~~~i~~ak~---~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~G~d~i~l 160 (263)
T cd07943 97 LGVDVVRVATHCTE------------ADVSEQHIGAARK---LGMDVVGFLMMSHMASPEELAEQAKLMESYGADCVYV 160 (263)
T ss_pred cCCCEEEEEechhh------------HHHHHHHHHHHHH---CCCeEEEEEEeccCCCHHHHHHHHHHHHHcCCCEEEE
Confidence 99998765432222 2356778899998 5788888887777778999999999999999999877
No 168
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=96.98 E-value=0.032 Score=55.92 Aligned_cols=138 Identities=15% Similarity=0.195 Sum_probs=100.6
Q ss_pred CCCcchHHHHHHHHHhcCCcEEEEEeeeCC---CCCccc--HHHHHHHHHHHHHhCCCcEEEe-ecCCCCCChHHHHHHH
Q 017200 156 PPDPDEPTNVAEAIASWGLDYVVITSVDRD---DLADQG--SGHFAQTVRKLKELKPNMLIEA-LVPDFRGNNGCVREVA 229 (375)
Q Consensus 156 ~ld~eEi~~~a~al~~~G~~eIvLTsgdr~---dl~d~G--~~~~~~lir~Ik~~~p~i~Ie~-l~pd~~g~~e~l~~L~ 229 (375)
.++.++....++++.+.|+++|-++-++.- .+ +.| ...=.+.++.+++..++..+.+ +.|.+ ++.+.++...
T Consensus 21 ~f~~~~~~~i~~~L~~aGv~~IEvg~~~g~g~~s~-~~g~~~~~~~e~i~~~~~~~~~~~~~~ll~pg~-~~~~dl~~a~ 98 (337)
T PRK08195 21 QYTLEQVRAIARALDAAGVPVIEVTHGDGLGGSSF-NYGFGAHTDEEYIEAAAEVVKQAKIAALLLPGI-GTVDDLKMAY 98 (337)
T ss_pred ccCHHHHHHHHHHHHHcCCCEEEeecCCCCCCccc-cCCCCCCCHHHHHHHHHHhCCCCEEEEEeccCc-ccHHHHHHHH
Confidence 488999999999999999999999844320 00 001 0001456677766667777776 44543 3677899999
Q ss_pred HcCcccccccccchHHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcCCcEEee
Q 017200 230 KSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTF 309 (375)
Q Consensus 230 ~aGldv~~hnlEtv~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~tkt~imvGlGET~ee~~etl~~Lrelgvd~v~i 309 (375)
+.|+|.+....- ....+...+.++.+|+ .|+.+...+|....-+++++++.++.+.+.|++.|.+
T Consensus 99 ~~gvd~iri~~~------------~~e~~~~~~~i~~ak~---~G~~v~~~l~~a~~~~~e~l~~~a~~~~~~Ga~~i~i 163 (337)
T PRK08195 99 DAGVRVVRVATH------------CTEADVSEQHIGLARE---LGMDTVGFLMMSHMAPPEKLAEQAKLMESYGAQCVYV 163 (337)
T ss_pred HcCCCEEEEEEe------------cchHHHHHHHHHHHHH---CCCeEEEEEEeccCCCHHHHHHHHHHHHhCCCCEEEe
Confidence 999998654321 1223566888999999 5788888898888889999999999999999999877
Q ss_pred e
Q 017200 310 G 310 (375)
Q Consensus 310 ~ 310 (375)
.
T Consensus 164 ~ 164 (337)
T PRK08195 164 V 164 (337)
T ss_pred C
Confidence 3
No 169
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=96.94 E-value=0.029 Score=54.26 Aligned_cols=140 Identities=19% Similarity=0.219 Sum_probs=99.1
Q ss_pred CCCcchHHHHHHHHHhcCCcEEEEEeeeCCCCCcccHHHH--HHHHHHHHHhC-CCcEEEeecCCCCCChHHHHHHHHcC
Q 017200 156 PPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHF--AQTVRKLKELK-PNMLIEALVPDFRGNNGCVREVAKSG 232 (375)
Q Consensus 156 ~ld~eEi~~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~--~~lir~Ik~~~-p~i~Ie~l~pd~~g~~e~l~~L~~aG 232 (375)
.++.++..+.++.+.+.|+++|=+.-.....-...|...| .+.++.|.+.. ++..+.++.-....+.+.++...+.|
T Consensus 16 ~f~~~~~~~ia~~L~~~GVd~IEvG~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~g 95 (266)
T cd07944 16 DFGDEFVKAIYRALAAAGIDYVEIGYRSSPEKEFKGKSAFCDDEFLRRLLGDSKGNTKIAVMVDYGNDDIDLLEPASGSV 95 (266)
T ss_pred cCCHHHHHHHHHHHHHCCCCEEEeecCCCCccccCCCccCCCHHHHHHHHhhhccCCEEEEEECCCCCCHHHHHHHhcCC
Confidence 3899999999999999999999877322111000011001 23455554433 45777665533323567788888889
Q ss_pred cccccccccchHHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcCCcEEeee
Q 017200 233 LNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFG 310 (375)
Q Consensus 233 ldv~~hnlEtv~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~tkt~imvGlGET~ee~~etl~~Lrelgvd~v~i~ 310 (375)
++.+.... +....++.++.++.+|+ .|+.+..+++-.++=+++.+.+.++.+.+.|++.+.+.
T Consensus 96 v~~iri~~------------~~~~~~~~~~~i~~ak~---~G~~v~~~~~~a~~~~~~~~~~~~~~~~~~g~~~i~l~ 158 (266)
T cd07944 96 VDMIRVAF------------HKHEFDEALPLIKAIKE---KGYEVFFNLMAISGYSDEELLELLELVNEIKPDVFYIV 158 (266)
T ss_pred cCEEEEec------------ccccHHHHHHHHHHHHH---CCCeEEEEEEeecCCCHHHHHHHHHHHHhCCCCEEEEe
Confidence 88765432 23468888999999998 57889999999999899999999999999999998773
No 170
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=96.92 E-value=0.027 Score=56.87 Aligned_cols=138 Identities=18% Similarity=0.263 Sum_probs=100.7
Q ss_pred CCCcchHHHHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCCCcEEEeecCCCCCChHHHHHHHHcCccc
Q 017200 156 PPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNV 235 (375)
Q Consensus 156 ~ld~eEi~~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGldv 235 (375)
.++.++.++.++.+.+.|+++|-+.. +...+ .-.+.++.|.+..+...+.++. +.+.+.++...++|++.
T Consensus 19 ~~s~~~k~~ia~~L~~~Gv~~IEvG~---p~~~~----~~~e~i~~i~~~~~~~~i~~~~---r~~~~di~~a~~~g~~~ 88 (365)
T TIGR02660 19 AFTAAEKLAIARALDEAGVDELEVGI---PAMGE----EERAVIRAIVALGLPARLMAWC---RARDADIEAAARCGVDA 88 (365)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEeC---CCCCH----HHHHHHHHHHHcCCCcEEEEEc---CCCHHHHHHHHcCCcCE
Confidence 48999999999999999999998752 22211 1245677777665666665554 22678899999999999
Q ss_pred ccccccchH-HHHHHhcCCCCCHHHHH----HHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcCCcEEee
Q 017200 236 FAHNIETVE-ELQSAVRDHRANFKQSL----DVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTF 309 (375)
Q Consensus 236 ~~hnlEtv~-rl~~~mr~r~~s~~~~l----~vl~~ak~~~p~Gl~tkt~imvGlGET~ee~~etl~~Lrelgvd~v~i 309 (375)
+...+-+++ .+..+++ .+.++.+ +.++.+++ .|+.+.-+.+-+.--+.+.+.+.++.+.+.|++.|.+
T Consensus 89 i~i~~~~Sd~~~~~~~~---~s~~e~l~~~~~~i~~ak~---~g~~v~~~~ed~~r~~~~~l~~~~~~~~~~Ga~~i~l 161 (365)
T TIGR02660 89 VHISIPVSDLQIEAKLR---KDRAWVLERLARLVSFARD---RGLFVSVGGEDASRADPDFLVELAEVAAEAGADRFRF 161 (365)
T ss_pred EEEEEccCHHHHHHHhC---cCHHHHHHHHHHHHHHHHh---CCCEEEEeecCCCCCCHHHHHHHHHHHHHcCcCEEEE
Confidence 888777777 4445554 3455555 67777887 5777776666655556788889999999999999877
No 171
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=96.92 E-value=0.032 Score=56.71 Aligned_cols=139 Identities=17% Similarity=0.202 Sum_probs=101.4
Q ss_pred CCCcchHHHHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCCCcEEEeecCCCCCChHHHHHHHHcCccc
Q 017200 156 PPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNV 235 (375)
Q Consensus 156 ~ld~eEi~~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGldv 235 (375)
.++.++.++.++.+.+.|+++|-+.. +...+ .-.+.++.|.+......+-++.. ...+.++...++|++.
T Consensus 22 ~~s~e~k~~ia~~L~~~GV~~IE~G~---p~~~~----~~~e~i~~i~~~~~~~~i~~~~r---~~~~di~~a~~~g~~~ 91 (378)
T PRK11858 22 VFTNEEKLAIARMLDEIGVDQIEAGF---PAVSE----DEKEAIKAIAKLGLNASILALNR---AVKSDIDASIDCGVDA 91 (378)
T ss_pred CCCHHHHHHHHHHHHHhCCCEEEEeC---CCcCh----HHHHHHHHHHhcCCCeEEEEEcc---cCHHHHHHHHhCCcCE
Confidence 48999999999999999999998642 22222 12456777766444444444432 1467789999999999
Q ss_pred ccccccchH-HHHHHhcCCCCCHHHHHH----HHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcCCcEEeee
Q 017200 236 FAHNIETVE-ELQSAVRDHRANFKQSLD----VLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFG 310 (375)
Q Consensus 236 ~~hnlEtv~-rl~~~mr~r~~s~~~~l~----vl~~ak~~~p~Gl~tkt~imvGlGET~ee~~etl~~Lrelgvd~v~i~ 310 (375)
+...+.+++ .+...++ .+.++.++ .++.|++ .|+.+..+.+-+.--+.+.+.+.++.+.+.|++.|.+.
T Consensus 92 i~i~~~~Sd~h~~~~~~---~s~~~~l~~~~~~v~~a~~---~G~~v~~~~ed~~r~~~~~l~~~~~~~~~~Ga~~I~l~ 165 (378)
T PRK11858 92 VHIFIATSDIHIKHKLK---KTREEVLERMVEAVEYAKD---HGLYVSFSAEDASRTDLDFLIEFAKAAEEAGADRVRFC 165 (378)
T ss_pred EEEEEcCCHHHHHHHhC---CCHHHHHHHHHHHHHHHHH---CCCeEEEEeccCCCCCHHHHHHHHHHHHhCCCCEEEEe
Confidence 888887777 4555554 35666665 7777777 57777777777777788999999999999999998773
No 172
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=96.90 E-value=0.041 Score=55.07 Aligned_cols=136 Identities=14% Similarity=0.187 Sum_probs=99.4
Q ss_pred CCCcchHHHHHHHHHhcCCcEEEEEeeeC-----CC--CCcccHHHHHHHHHHHHHhCCCcEEEe-ecCCCCCChHHHHH
Q 017200 156 PPDPDEPTNVAEAIASWGLDYVVITSVDR-----DD--LADQGSGHFAQTVRKLKELKPNMLIEA-LVPDFRGNNGCVRE 227 (375)
Q Consensus 156 ~ld~eEi~~~a~al~~~G~~eIvLTsgdr-----~d--l~d~G~~~~~~lir~Ik~~~p~i~Ie~-l~pd~~g~~e~l~~ 227 (375)
.++.++....++++.+.|+++|-++-++. -+ .+- ... .+.++++.+..++..+.+ +.|.. ++.+.++.
T Consensus 20 ~f~~~~~~~ia~~Ld~aGV~~IEvg~g~gl~g~s~~~G~~~--~~~-~e~i~~~~~~~~~~~~~~ll~pg~-~~~~dl~~ 95 (333)
T TIGR03217 20 QFTIEQVRAIAAALDEAGVDAIEVTHGDGLGGSSFNYGFSA--HTD-LEYIEAAADVVKRAKVAVLLLPGI-GTVHDLKA 95 (333)
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCccccCCCCC--CCh-HHHHHHHHHhCCCCEEEEEeccCc-cCHHHHHH
Confidence 48899999999999999999999984321 00 110 111 245556655556677764 44543 46788999
Q ss_pred HHHcCcccccccccchHHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcCCcEE
Q 017200 228 VAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVM 307 (375)
Q Consensus 228 L~~aGldv~~hnlEtv~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~tkt~imvGlGET~ee~~etl~~Lrelgvd~v 307 (375)
..++|+|.+..... ....+...+.++.+|+ .|+.+...+|--+.-+++++.+.++.+.+.|++.|
T Consensus 96 a~~~gvd~iri~~~------------~~e~d~~~~~i~~ak~---~G~~v~~~l~~s~~~~~e~l~~~a~~~~~~Ga~~i 160 (333)
T TIGR03217 96 AYDAGARTVRVATH------------CTEADVSEQHIGMARE---LGMDTVGFLMMSHMTPPEKLAEQAKLMESYGADCV 160 (333)
T ss_pred HHHCCCCEEEEEec------------cchHHHHHHHHHHHHH---cCCeEEEEEEcccCCCHHHHHHHHHHHHhcCCCEE
Confidence 99999998764321 1223556788899998 57888888988888899999999999999999998
Q ss_pred eee
Q 017200 308 TFG 310 (375)
Q Consensus 308 ~i~ 310 (375)
.+.
T Consensus 161 ~i~ 163 (333)
T TIGR03217 161 YIV 163 (333)
T ss_pred EEc
Confidence 773
No 173
>PRK09389 (R)-citramalate synthase; Provisional
Probab=96.33 E-value=0.083 Score=55.59 Aligned_cols=138 Identities=15% Similarity=0.194 Sum_probs=97.4
Q ss_pred CCCcchHHHHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCCCcEEEeecCCCCCChHHHHHHHHcCccc
Q 017200 156 PPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNV 235 (375)
Q Consensus 156 ~ld~eEi~~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGldv 235 (375)
+++.++.++.++.+.+.|+++|-+..--.. . .. .+.++.|.+......|..+..- ..+.++...++|++.
T Consensus 20 ~~s~e~K~~ia~~L~~~Gv~~IE~G~p~~~---~---~d-~e~v~~i~~~~~~~~i~a~~r~---~~~di~~a~~~g~~~ 89 (488)
T PRK09389 20 SLTPEEKLEIARKLDELGVDVIEAGSAITS---E---GE-REAIKAVTDEGLNAEICSFARA---VKVDIDAALECDVDS 89 (488)
T ss_pred CcCHHHHHHHHHHHHHcCCCEEEEeCCcCC---H---HH-HHHHHHHHhcCCCcEEEeeccc---CHHHHHHHHhCCcCE
Confidence 589999999999999999999988643211 1 11 3456667655555666666543 356688899999998
Q ss_pred ccccccchHH-HHHHhcCCCCCHHHHH----HHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcCCcEEee
Q 017200 236 FAHNIETVEE-LQSAVRDHRANFKQSL----DVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTF 309 (375)
Q Consensus 236 ~~hnlEtv~r-l~~~mr~r~~s~~~~l----~vl~~ak~~~p~Gl~tkt~imvGlGET~ee~~etl~~Lrelgvd~v~i 309 (375)
+...+-+++. +...++ .+.++.+ +.++.+++ .|+.+.-+++-+.--+.+.+.+.++.+.+.|++.|.+
T Consensus 90 v~i~~~~Sd~h~~~~l~---~s~~e~l~~~~~~v~~ak~---~g~~v~~~~ed~~r~~~~~l~~~~~~~~~~Ga~~i~l 162 (488)
T PRK09389 90 VHLVVPTSDLHIEYKLK---KTREEVLETAVEAVEYAKD---HGLIVELSGEDASRADLDFLKELYKAGIEAGADRICF 162 (488)
T ss_pred EEEEEccCHHHHHHHhC---CCHHHHHHHHHHHHHHHHH---CCCEEEEEEeeCCCCCHHHHHHHHHHHHhCCCCEEEE
Confidence 8887777773 333333 3555554 45566666 4777777777665555666779999999999999877
No 174
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=96.24 E-value=0.018 Score=54.06 Aligned_cols=143 Identities=17% Similarity=0.235 Sum_probs=91.5
Q ss_pred CCCcchHHHHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCCCcEEEeecCC-CCCChHHHHHHHHcCcc
Q 017200 156 PPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPD-FRGNNGCVREVAKSGLN 234 (375)
Q Consensus 156 ~ld~eEi~~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p~i~Ie~l~pd-~~g~~e~l~~L~~aGld 234 (375)
.++.++..+.++.+.+.|+++|-+... ... .. -.+.++.+.+..+...+..+..- .......++.++++|+|
T Consensus 10 ~~~~~~k~~i~~~L~~~Gv~~iEvg~~---~~~---~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~ 82 (237)
T PF00682_consen 10 AFSTEEKLEIAKALDEAGVDYIEVGFP---FAS---ED-DFEQVRRLREALPNARLQALCRANEEDIERAVEAAKEAGID 82 (237)
T ss_dssp T--HHHHHHHHHHHHHHTTSEEEEEHC---TSS---HH-HHHHHHHHHHHHHSSEEEEEEESCHHHHHHHHHHHHHTTSS
T ss_pred CcCHHHHHHHHHHHHHhCCCEEEEccc---ccC---HH-HHHHhhhhhhhhcccccceeeeehHHHHHHHHHhhHhccCC
Confidence 378899999999999999999987711 111 11 13344455444444555544331 10012235556779999
Q ss_pred cccccccchHHHHHHhcCCCCCHHHH----HHHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcCCcEEeee
Q 017200 235 VFAHNIETVEELQSAVRDHRANFKQS----LDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFG 310 (375)
Q Consensus 235 v~~hnlEtv~rl~~~mr~r~~s~~~~----l~vl~~ak~~~p~Gl~tkt~imvGlGET~ee~~etl~~Lrelgvd~v~i~ 310 (375)
.+...+..++...+... +.+.++. .+.++.+++ .|+.+.-+++-...-+++++.+..+.+.++|++.|.|.
T Consensus 83 ~i~i~~~~s~~~~~~~~--~~~~~~~~~~~~~~v~~ak~---~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~l~ 157 (237)
T PF00682_consen 83 IIRIFISVSDLHIRKNL--NKSREEALERIEEAVKYAKE---LGYEVAFGCEDASRTDPEELLELAEALAEAGADIIYLA 157 (237)
T ss_dssp EEEEEEETSHHHHHHHT--CSHHHHHHHHHHHHHHHHHH---TTSEEEEEETTTGGSSHHHHHHHHHHHHHHT-SEEEEE
T ss_pred EEEecCcccHHHHHHhh--cCCHHHHHHHHHHHHHHHHh---cCCceEeCccccccccHHHHHHHHHHHHHcCCeEEEee
Confidence 98887777773333322 3454444 455677777 47777777666667789999999999999999999884
No 175
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=96.16 E-value=0.19 Score=49.15 Aligned_cols=137 Identities=15% Similarity=0.240 Sum_probs=94.4
Q ss_pred CCCcchHHHHHHHH-HhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhC------CCcEEEeecCCCCCChHHHHHH
Q 017200 156 PPDPDEPTNVAEAI-ASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELK------PNMLIEALVPDFRGNNGCVREV 228 (375)
Q Consensus 156 ~ld~eEi~~~a~al-~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~------p~i~Ie~l~pd~~g~~e~l~~L 228 (375)
.++.++-++.++++ .+.|+++|-+++-- .. .+.+ +.++++.... +++.+-++.+ +...++..
T Consensus 15 ~~s~e~K~~i~~~L~~~~Gv~~IEvg~~~---~s---~~e~-~av~~~~~~~~~~~~~~~~~~~a~~~----~~~~~~~A 83 (280)
T cd07945 15 SFSPSEKLNIAKILLQELKVDRIEVASAR---VS---EGEF-EAVQKIIDWAAEEGLLDRIEVLGFVD----GDKSVDWI 83 (280)
T ss_pred ccCHHHHHHHHHHHHHHhCCCEEEecCCC---CC---HHHH-HHHHHHHHHhhhhccccCcEEEEecC----cHHHHHHH
Confidence 48999999999996 67799999887631 11 1112 4455443311 2355555554 34578899
Q ss_pred HHcCcccccccccchH-HHHHHhcCCCCCHHHH----HHHHHHHHHhCCCCceEEEeEEEecC----CCHHHHHHHHHHH
Q 017200 229 AKSGLNVFAHNIETVE-ELQSAVRDHRANFKQS----LDVLMMAKDYVPAGTLTKTSIMLGCG----ETPDQVVSTMEKV 299 (375)
Q Consensus 229 ~~aGldv~~hnlEtv~-rl~~~mr~r~~s~~~~----l~vl~~ak~~~p~Gl~tkt~imvGlG----ET~ee~~etl~~L 299 (375)
+++|++.+...+-+++ .+...++ .+.++. .++++.+++ .|+.+..+++- +| -+.+.+.+.++.+
T Consensus 84 ~~~g~~~i~i~~~~S~~h~~~~~~---~t~~e~l~~~~~~i~~a~~---~G~~v~~~~~d-~~~~~r~~~~~~~~~~~~~ 156 (280)
T cd07945 84 KSAGAKVLNLLTKGSLKHCTEQLR---KTPEEHFADIREVIEYAIK---NGIEVNIYLED-WSNGMRDSPDYVFQLVDFL 156 (280)
T ss_pred HHCCCCEEEEEEeCCHHHHHHHHC---cCHHHHHHHHHHHHHHHHh---CCCEEEEEEEe-CCCCCcCCHHHHHHHHHHH
Confidence 9999999888877777 5555554 244544 556677777 47888877775 55 3688888999999
Q ss_pred HHcCCcEEeee
Q 017200 300 RAAGVDVMTFG 310 (375)
Q Consensus 300 relgvd~v~i~ 310 (375)
.+.|++.|.+.
T Consensus 157 ~~~G~~~i~l~ 167 (280)
T cd07945 157 SDLPIKRIMLP 167 (280)
T ss_pred HHcCCCEEEec
Confidence 99999998873
No 176
>PRK00915 2-isopropylmalate synthase; Validated
Probab=95.89 E-value=0.58 Score=49.60 Aligned_cols=138 Identities=12% Similarity=0.129 Sum_probs=94.5
Q ss_pred CCCcchHHHHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCCCcEEEeecCCCCCChHHHH----HHHHc
Q 017200 156 PPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVR----EVAKS 231 (375)
Q Consensus 156 ~ld~eEi~~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p~i~Ie~l~pd~~g~~e~l~----~L~~a 231 (375)
.++.++-++.++.+.+.|+++|-+...- .. ... .+.++.|.+..++..|.++..- ..+.++ .++++
T Consensus 22 ~~s~e~K~~ia~~L~~~Gv~~IE~G~p~---~s---~~d-~~~v~~i~~~~~~~~i~a~~r~---~~~did~a~~a~~~~ 91 (513)
T PRK00915 22 SLTVEEKLQIAKQLERLGVDVIEAGFPA---SS---PGD-FEAVKRIARTVKNSTVCGLARA---VKKDIDAAAEALKPA 91 (513)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEcCCC---CC---hHH-HHHHHHHHhhCCCCEEEEEccC---CHHHHHHHHHHhhcC
Confidence 4899999999999999999999875421 11 111 2345777666667788777632 233344 44478
Q ss_pred CcccccccccchH-HHHHHhcCCCCCHHHHH----HHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcCCcE
Q 017200 232 GLNVFAHNIETVE-ELQSAVRDHRANFKQSL----DVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDV 306 (375)
Q Consensus 232 Gldv~~hnlEtv~-rl~~~mr~r~~s~~~~l----~vl~~ak~~~p~Gl~tkt~imvGlGET~ee~~etl~~Lrelgvd~ 306 (375)
|.+.+...+-+++ .+...++ .+.++.+ +.++.+++ .|+.+.-+.+-+.--+.+.+.+.++.+.+.|++.
T Consensus 92 ~~~~v~i~~~~Sd~h~~~~l~---~s~~e~l~~~~~~v~~ak~---~g~~v~f~~ed~~r~d~~~l~~~~~~~~~~Ga~~ 165 (513)
T PRK00915 92 EAPRIHTFIATSPIHMEYKLK---MSREEVLEMAVEAVKYARS---YTDDVEFSAEDATRTDLDFLCRVVEAAIDAGATT 165 (513)
T ss_pred CCCEEEEEECCcHHHHHHHhC---CCHHHHHHHHHHHHHHHHH---CCCeEEEEeCCCCCCCHHHHHHHHHHHHHcCCCE
Confidence 8888887777777 5555554 3566655 66677777 4676655555444445677889999999999999
Q ss_pred Eee
Q 017200 307 MTF 309 (375)
Q Consensus 307 v~i 309 (375)
|.+
T Consensus 166 i~l 168 (513)
T PRK00915 166 INI 168 (513)
T ss_pred EEE
Confidence 877
No 177
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=95.75 E-value=0.25 Score=48.04 Aligned_cols=139 Identities=17% Similarity=0.186 Sum_probs=93.7
Q ss_pred CCCcchHHHHHHHHHhcCCcEEEEEeeeCCC--CCcccHHHHHHHHHHHHHhCCCcEEEeecC-----CCC-----CChH
Q 017200 156 PPDPDEPTNVAEAIASWGLDYVVITSVDRDD--LADQGSGHFAQTVRKLKELKPNMLIEALVP-----DFR-----GNNG 223 (375)
Q Consensus 156 ~ld~eEi~~~a~al~~~G~~eIvLTsgdr~d--l~d~G~~~~~~lir~Ik~~~p~i~Ie~l~p-----d~~-----g~~e 223 (375)
.++.+|.++.+..+.+.|++.|-+.++-..+ +...+.+. .+.++.+.+..|+..+.++.- .+. ...+
T Consensus 17 ~~~~~~~~~ia~~L~~~Gv~~iE~G~~a~~~~~~~~~~~~~-~e~i~~~~~~~~~~~l~~~~r~~~~~~~~~~p~~~~~~ 95 (275)
T cd07937 17 RMRTEDMLPIAEALDEAGFFSLEVWGGATFDVCMRFLNEDP-WERLRELRKAMPNTPLQMLLRGQNLVGYRHYPDDVVEL 95 (275)
T ss_pred eccHHHHHHHHHHHHHcCCCEEEccCCcchhhhccccCCCH-HHHHHHHHHhCCCCceehhcccccccCccCCCcHHHHH
Confidence 3788999999999999999999888643211 00001111 456677776666666655432 110 1466
Q ss_pred HHHHHHHcCcccccccccchHHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEec--CCCHHHHHHHHHHHHH
Q 017200 224 CVREVAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGC--GETPDQVVSTMEKVRA 301 (375)
Q Consensus 224 ~l~~L~~aGldv~~hnlEtv~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~tkt~imvGl--GET~ee~~etl~~Lre 301 (375)
.++...++|+|++..... ..+.+...+.++.+|+ .|+.+...++.-. .-+++.+.+.++.+.+
T Consensus 96 di~~~~~~g~~~iri~~~------------~~~~~~~~~~i~~ak~---~G~~v~~~i~~~~~~~~~~~~~~~~~~~~~~ 160 (275)
T cd07937 96 FVEKAAKNGIDIFRIFDA------------LNDVRNLEVAIKAVKK---AGKHVEGAICYTGSPVHTLEYYVKLAKELED 160 (275)
T ss_pred HHHHHHHcCCCEEEEeec------------CChHHHHHHHHHHHHH---CCCeEEEEEEecCCCCCCHHHHHHHHHHHHH
Confidence 678888889887654322 2235777888899998 5777766665533 4567888899999999
Q ss_pred cCCcEEeee
Q 017200 302 AGVDVMTFG 310 (375)
Q Consensus 302 lgvd~v~i~ 310 (375)
.|++.|.+.
T Consensus 161 ~Ga~~i~l~ 169 (275)
T cd07937 161 MGADSICIK 169 (275)
T ss_pred cCCCEEEEc
Confidence 999998874
No 178
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=95.42 E-value=0.45 Score=51.34 Aligned_cols=138 Identities=18% Similarity=0.209 Sum_probs=92.5
Q ss_pred CCCcchHHHHHHHHHhcCCcEEEEEeeeCCCC--CcccHHHHHHHHHHHHHhCCCcEEEee--cCCCCC--------ChH
Q 017200 156 PPDPDEPTNVAEAIASWGLDYVVITSVDRDDL--ADQGSGHFAQTVRKLKELKPNMLIEAL--VPDFRG--------NNG 223 (375)
Q Consensus 156 ~ld~eEi~~~a~al~~~G~~eIvLTsgdr~dl--~d~G~~~~~~lir~Ik~~~p~i~Ie~l--~pd~~g--------~~e 223 (375)
.++.++.+..|.++.+.|+..|-+.||..-|. .-. .+.-.+.++.+++..|++.+.++ .++..| ..+
T Consensus 22 r~~t~d~l~ia~~l~~~G~~~iE~~ggatfd~~~rfl-~edp~e~l~~l~~~~~~~~l~~l~Rg~N~~gy~~ypd~vv~~ 100 (592)
T PRK09282 22 RMRTEDMLPIAEKLDKVGFWSLEVWGGATFDVCIRYL-NEDPWERLRKLKKALPNTPLQMLLRGQNLVGYRHYPDDVVEK 100 (592)
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEecCCccchhhcccC-CccHHHHHHHHHHhCCCCEEEEEeccccccccccccchhhHH
Confidence 37889999999999999999999988754221 000 01134667888888888888877 333333 245
Q ss_pred HHHHHHHcCcccccccccchHHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecC--CCHHHHHHHHHHHHH
Q 017200 224 CVREVAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCG--ETPDQVVSTMEKVRA 301 (375)
Q Consensus 224 ~l~~L~~aGldv~~hnlEtv~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~tkt~imvGlG--ET~ee~~etl~~Lre 301 (375)
.++...++|+|++.......+ .+.....++.+++ .|..+...|-+-++ -|.+.+++.++.+.+
T Consensus 101 ~v~~A~~~Gvd~irif~~lnd------------~~n~~~~i~~ak~---~G~~v~~~i~~t~~p~~t~~~~~~~a~~l~~ 165 (592)
T PRK09282 101 FVEKAAENGIDIFRIFDALND------------VRNMEVAIKAAKK---AGAHVQGTISYTTSPVHTIEKYVELAKELEE 165 (592)
T ss_pred HHHHHHHCCCCEEEEEEecCh------------HHHHHHHHHHHHH---cCCEEEEEEEeccCCCCCHHHHHHHHHHHHH
Confidence 678888999998766433322 1233455677777 46666655533332 367888888888888
Q ss_pred cCCcEEee
Q 017200 302 AGVDVMTF 309 (375)
Q Consensus 302 lgvd~v~i 309 (375)
.|++.|.|
T Consensus 166 ~Gad~I~i 173 (592)
T PRK09282 166 MGCDSICI 173 (592)
T ss_pred cCCCEEEE
Confidence 88888777
No 179
>cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of in
Probab=95.34 E-value=0.77 Score=44.50 Aligned_cols=145 Identities=14% Similarity=0.188 Sum_probs=91.7
Q ss_pred CCCcchHHHHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhC-CCcEEEeec----CCCC-CChHHHHHHH
Q 017200 156 PPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELK-PNMLIEALV----PDFR-GNNGCVREVA 229 (375)
Q Consensus 156 ~ld~eEi~~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~-p~i~Ie~l~----pd~~-g~~e~l~~L~ 229 (375)
.++.++..+.++++.+.|+++|-+.+.-.. ++ -.+.++.+.+.. ++..+-.+. +++. .+...++...
T Consensus 16 ~~s~e~k~~i~~~L~~~Gv~~IE~G~~~~~--~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~a~ 88 (273)
T cd07941 16 SFSVEDKLRIARKLDELGVDYIEGGWPGSN--PK-----DTEFFARAKKLKLKHAKLAAFGSTRRAGVKAEEDPNLQALL 88 (273)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEecCCcCC--HH-----HHHHHHHHHHcCCCCcEEEEEecccccCCCccchHHHHHHH
Confidence 488999999999999999999998653211 11 133455555443 234333321 2221 1345688899
Q ss_pred HcCcccccccccchH-HHHHHhc-CCCCCHHHHHHHHHHHHHhCCCCceEEEeEE---EecCCCHHHHHHHHHHHHHcCC
Q 017200 230 KSGLNVFAHNIETVE-ELQSAVR-DHRANFKQSLDVLMMAKDYVPAGTLTKTSIM---LGCGETPDQVVSTMEKVRAAGV 304 (375)
Q Consensus 230 ~aGldv~~hnlEtv~-rl~~~mr-~r~~s~~~~l~vl~~ak~~~p~Gl~tkt~im---vGlGET~ee~~etl~~Lrelgv 304 (375)
++|++.+...+-+++ .+...++ ++....+...+.++.+++ .|+.+..+.| -|.--+.+.+.+.++.+.+.|+
T Consensus 89 ~~g~~~i~i~~~~sd~~~~~~~~~~~~~~~~~~~~~i~~ak~---~G~~v~~~~~~~~d~~~~~~~~~~~~~~~~~~~g~ 165 (273)
T cd07941 89 EAGTPVVTIFGKSWDLHVTEALGTTLEENLAMIRDSVAYLKS---HGREVIFDAEHFFDGYKANPEYALATLKAAAEAGA 165 (273)
T ss_pred hCCCCEEEEEEcCCHHHHHHHcCCCHHHHHHHHHHHHHHHHH---cCCeEEEeEEeccccCCCCHHHHHHHHHHHHhCCC
Confidence 999998876665666 3344443 112334455567777777 4776666544 2333457777899999999999
Q ss_pred cEEeee
Q 017200 305 DVMTFG 310 (375)
Q Consensus 305 d~v~i~ 310 (375)
+.|.+.
T Consensus 166 ~~i~l~ 171 (273)
T cd07941 166 DWLVLC 171 (273)
T ss_pred CEEEEe
Confidence 988773
No 180
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=95.15 E-value=0.63 Score=48.54 Aligned_cols=138 Identities=14% Similarity=0.167 Sum_probs=90.1
Q ss_pred CCCcchHHHHHHHHHhcCCcEEEEEeeeCCCC--CcccHHHHHHHHHHHHHhCCCcEEEeec--CCCCC--------ChH
Q 017200 156 PPDPDEPTNVAEAIASWGLDYVVITSVDRDDL--ADQGSGHFAQTVRKLKELKPNMLIEALV--PDFRG--------NNG 223 (375)
Q Consensus 156 ~ld~eEi~~~a~al~~~G~~eIvLTsgdr~dl--~d~G~~~~~~lir~Ik~~~p~i~Ie~l~--pd~~g--------~~e 223 (375)
.++.++.+..|+++.+.|+..|-++||..-|- .-.+.+ =.+.++.|++..|++.+..+. +++.| ..+
T Consensus 22 ~~~t~dkl~ia~~Ld~~Gv~~IE~~ggatf~~~~~f~~e~-p~e~l~~l~~~~~~~~l~~l~r~~N~~G~~~~pddvv~~ 100 (448)
T PRK12331 22 RMTTEEMLPILEKLDNAGYHSLEMWGGATFDACLRFLNED-PWERLRKIRKAVKKTKLQMLLRGQNLLGYRNYADDVVES 100 (448)
T ss_pred ccCHHHHHHHHHHHHHcCCCEEEecCCccchhhhccCCCC-HHHHHHHHHHhCCCCEEEEEeccccccccccCchhhHHH
Confidence 47889999999999999999999998854321 000001 246778888777888776433 22222 245
Q ss_pred HHHHHHHcCcccccccccchHHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecCC--CHHHHHHHHHHHHH
Q 017200 224 CVREVAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGE--TPDQVVSTMEKVRA 301 (375)
Q Consensus 224 ~l~~L~~aGldv~~hnlEtv~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~tkt~imvGlGE--T~ee~~etl~~Lre 301 (375)
.++...++|+|++....-..+ + +...+.++.+++ .|+.+...|-.-++. |.+-+++..+.+.+
T Consensus 101 ~v~~A~~~Gvd~irif~~lnd-~-----------~n~~~~v~~ak~---~G~~v~~~i~~t~~p~~~~~~~~~~a~~l~~ 165 (448)
T PRK12331 101 FVQKSVENGIDIIRIFDALND-V-----------RNLETAVKATKK---AGGHAQVAISYTTSPVHTIDYFVKLAKEMQE 165 (448)
T ss_pred HHHHHHHCCCCEEEEEEecCc-H-----------HHHHHHHHHHHH---cCCeEEEEEEeecCCCCCHHHHHHHHHHHHH
Confidence 678888999998776543332 1 123446777777 465554444333332 56777888888888
Q ss_pred cCCcEEee
Q 017200 302 AGVDVMTF 309 (375)
Q Consensus 302 lgvd~v~i 309 (375)
.|+|.|.|
T Consensus 166 ~Gad~I~i 173 (448)
T PRK12331 166 MGADSICI 173 (448)
T ss_pred cCCCEEEE
Confidence 88888777
No 181
>PF04481 DUF561: Protein of unknown function (DUF561); InterPro: IPR007570 Protein in this entry are of unknown function and are found in cyanobacteria and the chloroplasts of algae. As the family is exclusively found in phototrophic organisms it may play a role in photosynthesis.
Probab=95.06 E-value=0.67 Score=43.83 Aligned_cols=126 Identities=19% Similarity=0.224 Sum_probs=93.6
Q ss_pred CCcchHHHHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCCCcEEEeecCCCCCChHHHHHHHHcCcccc
Q 017200 157 PDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVF 236 (375)
Q Consensus 157 ld~eEi~~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGldv~ 236 (375)
.+.+.+..++++....|.++|-|- -| .++|+.+++. .++.|++..- +++.+-.-.++|.|.+
T Consensus 24 Fd~~~V~~i~~AA~~ggAt~vDIA-------ad------p~LV~~~~~~-s~lPICVSaV----ep~~f~~aV~AGAdli 85 (242)
T PF04481_consen 24 FDAESVAAIVKAAEIGGATFVDIA-------AD------PELVKLAKSL-SNLPICVSAV----EPELFVAAVKAGADLI 85 (242)
T ss_pred cCHHHHHHHHHHHHccCCceEEec-------CC------HHHHHHHHHh-CCCCeEeecC----CHHHHHHHHHhCCCEE
Confidence 688899999999999999999443 12 4567777654 3566765432 5677777888999976
Q ss_pred cccccchHHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcCCcEE
Q 017200 237 AHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVM 307 (375)
Q Consensus 237 ~hnlEtv~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~tkt~imvGlGET~ee~~etl~~Lrelgvd~v 307 (375)
..+ -.|..|++= |..+.++.|+.-++-|++.|+ +..+.+ +=+.=..++-++...+|.++|+|.|
T Consensus 86 EIG--NfDsFY~qG--r~f~a~eVL~Lt~~tR~LLP~-~~LsVT--VPHiL~ld~Qv~LA~~L~~~GaDiI 149 (242)
T PF04481_consen 86 EIG--NFDSFYAQG--RRFSAEEVLALTRETRSLLPD-ITLSVT--VPHILPLDQQVQLAEDLVKAGADII 149 (242)
T ss_pred Eec--chHHHHhcC--CeecHHHHHHHHHHHHHhCCC-CceEEe--cCccccHHHHHHHHHHHHHhCCcEE
Confidence 543 346778763 578999999999999999987 543333 3444477778899999999999987
No 182
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=95.04 E-value=0.74 Score=49.61 Aligned_cols=138 Identities=17% Similarity=0.197 Sum_probs=91.9
Q ss_pred CCCcchHHHHHHHHHhcCCcEEEEEeeeCCCC--CcccHHHHHHHHHHHHHhCCCcEEEeec--CCCCC--------ChH
Q 017200 156 PPDPDEPTNVAEAIASWGLDYVVITSVDRDDL--ADQGSGHFAQTVRKLKELKPNMLIEALV--PDFRG--------NNG 223 (375)
Q Consensus 156 ~ld~eEi~~~a~al~~~G~~eIvLTsgdr~dl--~d~G~~~~~~lir~Ik~~~p~i~Ie~l~--pd~~g--------~~e 223 (375)
.++.++.+..|+++.+.|+..|-++||..-|- +-.+.+ =.+.++.|++..|++.+..+. ++..| ..+
T Consensus 17 ~~~t~dkl~ia~~L~~~Gv~~IE~~GGatfd~~~~f~~e~-~~e~l~~l~~~~~~~~l~~L~Rg~N~~G~~~ypddvv~~ 95 (582)
T TIGR01108 17 RMRTEDMLPIAEKLDDVGYWSLEVWGGATFDACIRFLNED-PWERLRELKKALPNTPLQMLLRGQNLLGYRHYADDVVER 95 (582)
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEecCCcccccccccCCCC-HHHHHHHHHHhCCCCEEEEEEccccccccccCchhhHHH
Confidence 47889999999999999999999998754331 111111 256788888877888888773 33322 144
Q ss_pred HHHHHHHcCcccccccccchHHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecC--CCHHHHHHHHHHHHH
Q 017200 224 CVREVAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCG--ETPDQVVSTMEKVRA 301 (375)
Q Consensus 224 ~l~~L~~aGldv~~hnlEtv~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~tkt~imvGlG--ET~ee~~etl~~Lre 301 (375)
.++...++|+|++....-..+ .+.....++.+++ .|+.+...|-.-+. -|.+.+++.++.+.+
T Consensus 96 ~v~~a~~~Gvd~irif~~lnd------------~~n~~~~i~~ak~---~G~~v~~~i~~t~~p~~~~~~~~~~~~~~~~ 160 (582)
T TIGR01108 96 FVKKAVENGMDVFRIFDALND------------PRNLQAAIQAAKK---HGAHAQGTISYTTSPVHTLETYLDLAEELLE 160 (582)
T ss_pred HHHHHHHCCCCEEEEEEecCc------------HHHHHHHHHHHHH---cCCEEEEEEEeccCCCCCHHHHHHHHHHHHH
Confidence 577888999998766433222 1234455677777 46655555433221 367888888888888
Q ss_pred cCCcEEee
Q 017200 302 AGVDVMTF 309 (375)
Q Consensus 302 lgvd~v~i 309 (375)
.|++.|.|
T Consensus 161 ~Gad~I~i 168 (582)
T TIGR01108 161 MGVDSICI 168 (582)
T ss_pred cCCCEEEE
Confidence 88888776
No 183
>COG0119 LeuA Isopropylmalate/homocitrate/citramalate synthases [Amino acid transport and metabolism]
Probab=95.01 E-value=0.3 Score=50.33 Aligned_cols=141 Identities=18% Similarity=0.237 Sum_probs=97.2
Q ss_pred CCCcchHHHHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCC---CcEEEeecCCCCCChHHHHHHHHcC
Q 017200 156 PPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKP---NMLIEALVPDFRGNNGCVREVAKSG 232 (375)
Q Consensus 156 ~ld~eEi~~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p---~i~Ie~l~pd~~g~~e~l~~L~~aG 232 (375)
+++.++-++.|+++.++|+++|-........ +-.+.++.|....+ ...+.++.++ ....++.+.++|
T Consensus 20 ~~s~e~Ki~Ia~~Ld~lGv~~IE~g~p~~s~-------~~~~~~~~i~~~~~~~~~~~~~~~~~~---~~~~~ea~~~a~ 89 (409)
T COG0119 20 SFSVEEKIRIAKALDDLGVDYIEAGFPVASP-------GDFEFVRAIAEKAGLFICALIAALARA---IKRDIEALLEAG 89 (409)
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEEeCCcCCh-------hhHHHHHHHHHhcCcccchhhhhhHHh---HHhhHHHHHhCC
Confidence 5899999999999999999999877653221 12334445543222 2233333333 355799999999
Q ss_pred cccccccccchH-HHHHHhc-CCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcCCcEEee
Q 017200 233 LNVFAHNIETVE-ELQSAVR-DHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTF 309 (375)
Q Consensus 233 ldv~~hnlEtv~-rl~~~mr-~r~~s~~~~l~vl~~ak~~~p~Gl~tkt~imvGlGET~ee~~etl~~Lrelgvd~v~i 309 (375)
.+.+...+.+++ -+...++ .+....+...+.++.|++ .|+.+.-+..-.+.-+.+.+++.++.+.+.|++.|.+
T Consensus 90 ~~~i~if~~tSd~h~~~~~~~t~~e~l~~~~~~v~ya~~---~g~~~~~~~Ed~~rt~~~~l~~~~~~~~~~ga~~i~l 165 (409)
T COG0119 90 VDRIHIFIATSDLHLRYKLKKTREEVLERAVDAVEYARD---HGLEVRFSAEDATRTDPEFLAEVVKAAIEAGADRINL 165 (409)
T ss_pred CCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHH---cCCeEEEEeeccccCCHHHHHHHHHHHHHcCCcEEEE
Confidence 999888888887 3333332 122333444556677777 5777777777777888888899999999999999988
No 184
>TIGR00973 leuA_bact 2-isopropylmalate synthase, bacterial type. A larger family of homologous proteins includes homocitrate synthase, distinct lineages of 2-isopropylmalate synthase, several distinct, uncharacterized, orthologous sets in the Archaea, and other related enzymes. This model describes a family of 2-isopropylmalate synthases found primarily in Bacteria. The homologous families in the Archaea may represent isozymes and/or related enzymes.
Probab=94.99 E-value=1.6 Score=46.15 Aligned_cols=138 Identities=14% Similarity=0.093 Sum_probs=92.5
Q ss_pred CCCcchHHHHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCCCcEEEeecCCCCCChHHHHHHH----Hc
Q 017200 156 PPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVA----KS 231 (375)
Q Consensus 156 ~ld~eEi~~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~----~a 231 (375)
+++.++-++.++.+.+.|+++|-+..--. . ... .+.++.|.+..+...+.++.+- ..+.++... ++
T Consensus 19 ~~s~e~K~~ia~~L~~~GV~~IEvG~p~~---s---~~d-~e~v~~i~~~~~~~~i~al~r~---~~~did~a~~al~~~ 88 (494)
T TIGR00973 19 SLTVEEKLQIALALERLGVDIIEAGFPVS---S---PGD-FEAVQRIARTVKNPRVCGLARC---VEKDIDAAAEALKPA 88 (494)
T ss_pred CcCHHHHHHHHHHHHHcCCCEEEEECCCC---C---HHH-HHHHHHHHHhCCCCEEEEEcCC---CHHhHHHHHHhcccc
Confidence 48999999999999999999997653221 1 112 2445777665566777777653 334444444 44
Q ss_pred CcccccccccchH-HHHHHhcCCCCCHHHHH----HHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcCCcE
Q 017200 232 GLNVFAHNIETVE-ELQSAVRDHRANFKQSL----DVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDV 306 (375)
Q Consensus 232 Gldv~~hnlEtv~-rl~~~mr~r~~s~~~~l----~vl~~ak~~~p~Gl~tkt~imvGlGET~ee~~etl~~Lrelgvd~ 306 (375)
+.+.+...+-+++ .+...++ .+.++.+ +.++.+++ .|+.+.-+.+-+.--+.+.+++.++.+.+.|++.
T Consensus 89 ~~~~v~i~~~~S~~h~~~~l~---~s~~e~l~~~~~~v~~a~~---~g~~v~f~~Ed~~r~d~~~l~~~~~~~~~~Ga~~ 162 (494)
T TIGR00973 89 EKFRIHTFIATSPIHLEHKLK---MTRDEVLERAVGMVKYAKN---FTDDVEFSCEDAGRTEIPFLARIVEAAINAGATT 162 (494)
T ss_pred CCCEEEEEEccCHHHHHHHhC---CCHHHHHHHHHHHHHHHHH---cCCeEEEEcCCCCCCCHHHHHHHHHHHHHcCCCE
Confidence 6666776666777 4444444 4556655 46677777 4566655555555556778889999999999999
Q ss_pred Eee
Q 017200 307 MTF 309 (375)
Q Consensus 307 v~i 309 (375)
|.+
T Consensus 163 i~l 165 (494)
T TIGR00973 163 INI 165 (494)
T ss_pred EEe
Confidence 887
No 185
>COG0602 NrdG Organic radical activating enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=94.95 E-value=0.077 Score=49.80 Aligned_cols=70 Identities=19% Similarity=0.232 Sum_probs=43.0
Q ss_pred EEEEeeeCCccCCCCcCCCCCCCCCC------CCCCcchHHHHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHH
Q 017200 129 TATIMILGDTCTRGCRFCNVKTSRAP------PPPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKL 202 (375)
Q Consensus 129 tatfm~i~d~C~~~C~FC~v~~~r~~------~~ld~eEi~~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~I 202 (375)
-+-|+- ..||+.+|.||--+.+-.+ ..++.+||++.++... .+.+.|+||||+. -+. ..+.++++.+
T Consensus 23 ~~vFVR-~~GC~l~C~~Cdt~~t~~~~~~~~~~~~~~~~I~~~i~~~~-~~~~~V~lTGGEP-~~~----~~l~~Ll~~l 95 (212)
T COG0602 23 PSVFVR-FAGCNLRCPGCDTKYTWDFNYGKPGTPMSADEILADIKSLG-YKARGVSLTGGEP-LLQ----PNLLELLELL 95 (212)
T ss_pred eeEEEE-cCCCCCCCCCCCChhhhcccccCCCCccCHHHHHHHHHhcC-CCcceEEEeCCcC-CCc----ccHHHHHHHH
Confidence 444554 4599999999997643211 2356666665554431 2456999999986 222 1256677777
Q ss_pred HHh
Q 017200 203 KEL 205 (375)
Q Consensus 203 k~~ 205 (375)
++.
T Consensus 96 ~~~ 98 (212)
T COG0602 96 KRL 98 (212)
T ss_pred HhC
Confidence 654
No 186
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=94.92 E-value=0.66 Score=43.42 Aligned_cols=112 Identities=21% Similarity=0.287 Sum_probs=84.6
Q ss_pred CCcchHHHHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCCCcEEEeecCCCCCChHHHHHHHHcCcccc
Q 017200 157 PDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVF 236 (375)
Q Consensus 157 ld~eEi~~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGldv~ 236 (375)
.++++..+.++++.+.|++-+-+|--. + .-.+.|+.+++.+|++.|.+=+ .. +.+.++...++|.+.+
T Consensus 17 ~~~e~a~~~~~al~~~Gi~~iEit~~t----~-----~a~~~i~~l~~~~~~~~vGAGT--Vl-~~~~a~~a~~aGA~Fi 84 (204)
T TIGR01182 17 DDVDDALPLAKALIEGGLRVLEVTLRT----P-----VALDAIRLLRKEVPDALIGAGT--VL-NPEQLRQAVDAGAQFI 84 (204)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEeCCC----c-----cHHHHHHHHHHHCCCCEEEEEe--CC-CHHHHHHHHHcCCCEE
Confidence 478999999999999999999988621 2 1467889999889987776422 11 7899999999998865
Q ss_pred cccccchHHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcCCcEEeee
Q 017200 237 AHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFG 310 (375)
Q Consensus 237 ~hnlEtv~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~tkt~imvGlGET~ee~~etl~~Lrelgvd~v~i~ 310 (375)
|. +..+ -++++.+++ .|+..-.+.| |.-|+...+ +.|.+.+.+|
T Consensus 85 -------------vs-P~~~----~~v~~~~~~---~~i~~iPG~~-----TptEi~~A~----~~Ga~~vKlF 128 (204)
T TIGR01182 85 -------------VS-PGLT----PELAKHAQD---HGIPIIPGVA-----TPSEIMLAL----ELGITALKLF 128 (204)
T ss_pred -------------EC-CCCC----HHHHHHHHH---cCCcEECCCC-----CHHHHHHHH----HCCCCEEEEC
Confidence 33 2332 278888888 4677666664 888887665 7899999887
No 187
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=94.59 E-value=0.59 Score=43.47 Aligned_cols=112 Identities=21% Similarity=0.384 Sum_probs=81.6
Q ss_pred CCcchHHHHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCCCcEEEeecCCCCCChHHHHHHHHcCcccc
Q 017200 157 PDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVF 236 (375)
Q Consensus 157 ld~eEi~~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGldv~ 236 (375)
.++++.++.++++.+.|++-+=+|--. ++ ..+.|+.+++.+|++.|.+=+= . +.+.++...++|.+.+
T Consensus 17 ~~~~~a~~~~~al~~gGi~~iEiT~~t----~~-----a~~~I~~l~~~~p~~~vGAGTV-~--~~e~a~~a~~aGA~Fi 84 (196)
T PF01081_consen 17 DDPEDAVPIAEALIEGGIRAIEITLRT----PN-----ALEAIEALRKEFPDLLVGAGTV-L--TAEQAEAAIAAGAQFI 84 (196)
T ss_dssp SSGGGHHHHHHHHHHTT--EEEEETTS----TT-----HHHHHHHHHHHHTTSEEEEES-----SHHHHHHHHHHT-SEE
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEecCC----cc-----HHHHHHHHHHHCCCCeeEEEec-c--CHHHHHHHHHcCCCEE
Confidence 468999999999999999999888532 22 4678899998899988875321 1 7899999999998865
Q ss_pred cccccchHHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcCCcEEeee
Q 017200 237 AHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFG 310 (375)
Q Consensus 237 ~hnlEtv~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~tkt~imvGlGET~ee~~etl~~Lrelgvd~v~i~ 310 (375)
|. +..+ -++++.+++. |+..-.+.| |..|+...+ ++|.+.+.+|
T Consensus 85 -------------vS-P~~~----~~v~~~~~~~---~i~~iPG~~-----TptEi~~A~----~~G~~~vK~F 128 (196)
T PF01081_consen 85 -------------VS-PGFD----PEVIEYAREY---GIPYIPGVM-----TPTEIMQAL----EAGADIVKLF 128 (196)
T ss_dssp -------------EE-SS------HHHHHHHHHH---TSEEEEEES-----SHHHHHHHH----HTT-SEEEET
T ss_pred -------------EC-CCCC----HHHHHHHHHc---CCcccCCcC-----CHHHHHHHH----HCCCCEEEEe
Confidence 33 2222 3677888884 688888885 999988765 7899999997
No 188
>PRK08091 ribulose-phosphate 3-epimerase; Validated
Probab=94.55 E-value=1.1 Score=42.63 Aligned_cols=158 Identities=8% Similarity=0.023 Sum_probs=95.2
Q ss_pred CCcchHHHHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCCCcEEEeecCCCCCChHHHHHHHHcCcccc
Q 017200 157 PDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVF 236 (375)
Q Consensus 157 ld~eEi~~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGldv~ 236 (375)
.|+..+.+.++++.+.|++++++==-|..-.|.-.+. ..+|+.|++..| +.+++.+-+ ..+.++.+.++|+|.+
T Consensus 22 ad~~~l~~el~~l~~~g~d~lHiDVMDG~FVPNitfG--p~~i~~i~~~~~-~DvHLMv~~---P~~~i~~~~~aGad~I 95 (228)
T PRK08091 22 SNWLKFNETLTTLSENQLRLLHFDIADGQFSPFFTVG--AIAIKQFPTHCF-KDVHLMVRD---QFEVAKACVAAGADIV 95 (228)
T ss_pred cCHHHHHHHHHHHHHCCCCEEEEeccCCCcCCccccC--HHHHHHhCCCCC-EEEEeccCC---HHHHHHHHHHhCCCEE
Confidence 5667888899999999999998765554433431111 346667764344 555655532 2457899999999999
Q ss_pred cccccchHHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcCCcEEeeecCCCCC
Q 017200 237 AHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQYMRPS 316 (375)
Q Consensus 237 ~hnlEtv~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~tkt~imvGlGET~ee~~etl~~Lrelgvd~v~i~qYl~P~ 316 (375)
....|..+ +-.++++.+|+ .|+.+++++.+.-+-..+++...+. .+|.|.+.. ..|+
T Consensus 96 t~H~Ea~~--------------~~~~~l~~Ik~---~g~~~kaGlalnP~Tp~~~i~~~l~-----~vD~VLiMt-V~PG 152 (228)
T PRK08091 96 TLQVEQTH--------------DLALTIEWLAK---QKTTVLIGLCLCPETPISLLEPYLD-----QIDLIQILT-LDPR 152 (228)
T ss_pred EEcccCcc--------------cHHHHHHHHHH---CCCCceEEEEECCCCCHHHHHHHHh-----hcCEEEEEE-ECCC
Confidence 98888532 12356677777 4666789999888755555554444 255554421 1464
Q ss_pred CCCCCccccCCHHHHHHHHHHHHHhhhh
Q 017200 317 KRHMPVSEYITPEAFERYRALGMEMGFR 344 (375)
Q Consensus 317 ~~~~~v~~~v~pe~~~~l~~~a~~~gf~ 344 (375)
..+-+..+. .-++.++++++-.+.|+.
T Consensus 153 fgGQ~f~~~-~l~KI~~lr~~~~~~~~~ 179 (228)
T PRK08091 153 TGTKAPSDL-ILDRVIQVENRLGNRRVE 179 (228)
T ss_pred CCCccccHH-HHHHHHHHHHHHHhcCCC
Confidence 333322211 123455555554455543
No 189
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=94.43 E-value=1 Score=42.15 Aligned_cols=113 Identities=21% Similarity=0.251 Sum_probs=84.4
Q ss_pred CCcchHHHHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCCCcEEEeecCCCCCChHHHHHHHHcCcccc
Q 017200 157 PDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVF 236 (375)
Q Consensus 157 ld~eEi~~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGldv~ 236 (375)
.++++.++.++++.+.|++-|=||--+ ++ -.+.|+.+++.+|++.|.+=+= + +.+.++...++|.+.+
T Consensus 13 ~~~~~a~~ia~al~~gGi~~iEit~~t----p~-----a~~~I~~l~~~~~~~~vGAGTV-l--~~e~a~~ai~aGA~Fi 80 (201)
T PRK06015 13 DDVEHAVPLARALAAGGLPAIEITLRT----PA-----ALDAIRAVAAEVEEAIVGAGTI-L--NAKQFEDAAKAGSRFI 80 (201)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEeCCC----cc-----HHHHHHHHHHHCCCCEEeeEeC-c--CHHHHHHHHHcCCCEE
Confidence 478999999999999999988888532 11 3578888988889877765221 1 7899999999998865
Q ss_pred cccccchHHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcCCcEEeeec
Q 017200 237 AHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQ 311 (375)
Q Consensus 237 ~hnlEtv~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~tkt~imvGlGET~ee~~etl~~Lrelgvd~v~i~q 311 (375)
|. +..+ -++++.+++ .|+..-.+.| |..|+...+ ++|.+.|.+|+
T Consensus 81 -------------vS-P~~~----~~vi~~a~~---~~i~~iPG~~-----TptEi~~A~----~~Ga~~vK~FP 125 (201)
T PRK06015 81 -------------VS-PGTT----QELLAAAND---SDVPLLPGAA-----TPSEVMALR----EEGYTVLKFFP 125 (201)
T ss_pred -------------EC-CCCC----HHHHHHHHH---cCCCEeCCCC-----CHHHHHHHH----HCCCCEEEECC
Confidence 33 2322 367788888 4677777775 898887765 78999998873
No 190
>PRK12344 putative alpha-isopropylmalate/homocitrate synthase family transferase; Provisional
Probab=94.39 E-value=1.7 Score=46.30 Aligned_cols=140 Identities=17% Similarity=0.261 Sum_probs=90.3
Q ss_pred CCCcchHHHHHHHHHhcCCcEEEEEee-eCCCCCcccHHHHHHHHHHHHHhC-CCcEEEeec----CCCCC-ChHHHHHH
Q 017200 156 PPDPDEPTNVAEAIASWGLDYVVITSV-DRDDLADQGSGHFAQTVRKLKELK-PNMLIEALV----PDFRG-NNGCVREV 228 (375)
Q Consensus 156 ~ld~eEi~~~a~al~~~G~~eIvLTsg-dr~dl~d~G~~~~~~lir~Ik~~~-p~i~Ie~l~----pd~~g-~~e~l~~L 228 (375)
+++.++.++.++.+.+.|+++|-+... ..++ | .+.++.|.+.. .+..+..+. ++... ++..++.+
T Consensus 23 ~~s~e~Kl~ia~~L~~~Gvd~IEvG~p~as~~--d------~~~~~~i~~~~l~~~~i~~~~~~~~~~i~~~~d~~~e~~ 94 (524)
T PRK12344 23 SFSVEDKLRIARKLDELGVDYIEGGWPGSNPK--D------TEFFKRAKELKLKHAKLAAFGSTRRAGVSAEEDPNLQAL 94 (524)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEcCCcCChh--H------HHHHHHHHHhCCCCcEEEEEeeccccCCCcccHHHHHHH
Confidence 589999999999999999999988542 1111 1 23456665422 245555443 23211 35678889
Q ss_pred HHcCcccccccccchH-HHHHHhcCCCCCHHHHH----HHHHHHHHhCCCCceEEEeEE---EecCCCHHHHHHHHHHHH
Q 017200 229 AKSGLNVFAHNIETVE-ELQSAVRDHRANFKQSL----DVLMMAKDYVPAGTLTKTSIM---LGCGETPDQVVSTMEKVR 300 (375)
Q Consensus 229 ~~aGldv~~hnlEtv~-rl~~~mr~r~~s~~~~l----~vl~~ak~~~p~Gl~tkt~im---vGlGET~ee~~etl~~Lr 300 (375)
.++|.+.+...+-+++ .+...++ .+.++.+ +.++.+++ .|+.+.-+.+ =|.-.+.+-+++.++.+.
T Consensus 95 ~~~g~~~i~i~~~~Sd~h~~~~l~---~s~~e~l~~~~~~v~~ak~---~G~~v~~~~e~~~Da~r~d~~~l~~~~~~~~ 168 (524)
T PRK12344 95 LDAGTPVVTIFGKSWDLHVTEALR---TTLEENLAMIRDSVAYLKA---HGREVIFDAEHFFDGYKANPEYALATLKAAA 168 (524)
T ss_pred HhCCCCEEEEEECCCHHHHHHHcC---CCHHHHHHHHHHHHHHHHH---cCCeEEEccccccccccCCHHHHHHHHHHHH
Confidence 9999999888777777 3334443 3455555 55566776 4665554433 222234566778889999
Q ss_pred HcCCcEEee
Q 017200 301 AAGVDVMTF 309 (375)
Q Consensus 301 elgvd~v~i 309 (375)
+.|++.+.+
T Consensus 169 ~~Gad~i~l 177 (524)
T PRK12344 169 EAGADWVVL 177 (524)
T ss_pred hCCCCeEEE
Confidence 999999877
No 191
>PRK14041 oxaloacetate decarboxylase; Provisional
Probab=94.39 E-value=1.5 Score=46.11 Aligned_cols=138 Identities=15% Similarity=0.148 Sum_probs=90.0
Q ss_pred CCCcchHHHHHHHHHhcCCcEEEEEeeeCCCC--CcccHHHHHHHHHHHHHhCCCcEEEee--cCCCCCC--------hH
Q 017200 156 PPDPDEPTNVAEAIASWGLDYVVITSVDRDDL--ADQGSGHFAQTVRKLKELKPNMLIEAL--VPDFRGN--------NG 223 (375)
Q Consensus 156 ~ld~eEi~~~a~al~~~G~~eIvLTsgdr~dl--~d~G~~~~~~lir~Ik~~~p~i~Ie~l--~pd~~g~--------~e 223 (375)
.++.++.+..|+++.+.|+..|-+.||..-|- .-. ...=.+.++.|++..|++.+.++ .++..|- ..
T Consensus 21 ~~~t~dkl~Ia~~Ld~~Gv~~IE~~ggatfd~~~~Fl-~e~p~e~l~~l~~~~~~~~l~~l~r~~N~~G~~~~~dDvv~~ 99 (467)
T PRK14041 21 RMRTEDMLPALEAFDRMGFYSMEVWGGATFDVCVRFL-NENPWERLKEIRKRLKNTKIQMLLRGQNLVGYRHYADDVVEL 99 (467)
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEecCCccchhhhccc-CCCHHHHHHHHHHhCCCCEEEEEeccccccCcccccchhhHH
Confidence 47899999999999999999999977743221 000 00124678888877788888763 2333221 22
Q ss_pred HHHHHHHcCcccccccccchHHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecC--CCHHHHHHHHHHHHH
Q 017200 224 CVREVAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCG--ETPDQVVSTMEKVRA 301 (375)
Q Consensus 224 ~l~~L~~aGldv~~hnlEtv~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~tkt~imvGlG--ET~ee~~etl~~Lre 301 (375)
.++...++|+|++......++ .+.....++.+++ .|..+...+-.-++ -|.+.+++..+.+.+
T Consensus 100 fv~~A~~~Gvd~irif~~lnd------------~~n~~~~i~~ak~---~G~~v~~~i~~t~~p~~t~e~~~~~a~~l~~ 164 (467)
T PRK14041 100 FVKKVAEYGLDIIRIFDALND------------IRNLEKSIEVAKK---HGAHVQGAISYTVSPVHTLEYYLEFARELVD 164 (467)
T ss_pred HHHHHHHCCcCEEEEEEeCCH------------HHHHHHHHHHHHH---CCCEEEEEEEeccCCCCCHHHHHHHHHHHHH
Confidence 367778899998876544433 1223455677777 45655555543333 367778888888888
Q ss_pred cCCcEEee
Q 017200 302 AGVDVMTF 309 (375)
Q Consensus 302 lgvd~v~i 309 (375)
.|++.|.|
T Consensus 165 ~Gad~I~i 172 (467)
T PRK14041 165 MGVDSICI 172 (467)
T ss_pred cCCCEEEE
Confidence 88888776
No 192
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=94.14 E-value=2 Score=40.49 Aligned_cols=134 Identities=13% Similarity=0.137 Sum_probs=82.0
Q ss_pred cchHHHHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCCCcEEEeecCCCCCChHHHHHHHHcCcccccc
Q 017200 159 PDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAH 238 (375)
Q Consensus 159 ~eEi~~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGldv~~h 238 (375)
.+++.+.++.+.+.|+++++++..+++.. ..|. ..+++++|++.. .+.|.+ .+... +.+.++.+.+.|++.+-.
T Consensus 26 ~~d~~~~a~~~~~~G~~~i~i~d~~~~~~-~~~~--~~~~i~~i~~~~-~~pv~~-~GGI~-s~~d~~~~l~~G~~~v~i 99 (243)
T cd04731 26 AGDPVELAKRYNEQGADELVFLDITASSE-GRET--MLDVVERVAEEV-FIPLTV-GGGIR-SLEDARRLLRAGADKVSI 99 (243)
T ss_pred CCCHHHHHHHHHHCCCCEEEEEcCCcccc-cCcc--cHHHHHHHHHhC-CCCEEE-eCCCC-CHHHHHHHHHcCCceEEE
Confidence 45888899999999999999998876422 1222 467888888764 233332 22322 678888888889887655
Q ss_pred cccchHHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEE------------ecCCCHHHHHHHHHHHHHcCCcE
Q 017200 239 NIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIML------------GCGETPDQVVSTMEKVRAAGVDV 306 (375)
Q Consensus 239 nlEtv~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~tkt~imv------------GlGET~ee~~etl~~Lrelgvd~ 306 (375)
+-... . +.+...++.+...+ ..+.+..++.. |.-+|+.+..+.++.+.+.|++.
T Consensus 100 g~~~~-------~----~p~~~~~i~~~~~~---~~i~~~ld~k~~~~~~~~v~~~~~~~~~~~~~~~~~~~l~~~G~d~ 165 (243)
T cd04731 100 NSAAV-------E----NPELIREIAKRFGS---QCVVVSIDAKRRGDGGYEVYTHGGRKPTGLDAVEWAKEVEELGAGE 165 (243)
T ss_pred Cchhh-------h----ChHHHHHHHHHcCC---CCEEEEEEeeecCCCceEEEEcCCceecCCCHHHHHHHHHHCCCCE
Confidence 42111 1 11222222222211 22444444332 23456778888889999999999
Q ss_pred EeeecC
Q 017200 307 MTFGQY 312 (375)
Q Consensus 307 v~i~qY 312 (375)
+.+..+
T Consensus 166 i~v~~i 171 (243)
T cd04731 166 ILLTSM 171 (243)
T ss_pred EEEecc
Confidence 888543
No 193
>PRK14024 phosphoribosyl isomerase A; Provisional
Probab=94.00 E-value=0.99 Score=42.89 Aligned_cols=163 Identities=16% Similarity=0.176 Sum_probs=93.9
Q ss_pred cchHHHHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCCCcEEEeecCCCCCChHHHHHHHHcCcccccc
Q 017200 159 PDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAH 238 (375)
Q Consensus 159 ~eEi~~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGldv~~h 238 (375)
..+|++.|+.+.+.|++++++.--+.. . |...-.++|++|.+.. .+.+. .+.-..+.|.++.+.++|++.+..
T Consensus 31 ~~dp~~~a~~~~~~g~~~l~ivDLd~~--~--g~~~n~~~i~~i~~~~-~~pv~--vgGGirs~edv~~~l~~Ga~kvvi 103 (241)
T PRK14024 31 YGSPLDAALAWQRDGAEWIHLVDLDAA--F--GRGSNRELLAEVVGKL-DVKVE--LSGGIRDDESLEAALATGCARVNI 103 (241)
T ss_pred CCCHHHHHHHHHHCCCCEEEEEecccc--C--CCCccHHHHHHHHHHc-CCCEE--EcCCCCCHHHHHHHHHCCCCEEEE
Confidence 348999999999999999999866542 1 2222348888887754 33333 222222789999999999998766
Q ss_pred cccch--HHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeE--EEecCCCHHHHHHHHHHHHHcCCcEEeeecCCC
Q 017200 239 NIETV--EELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSI--MLGCGETPDQVVSTMEKVRAAGVDVMTFGQYMR 314 (375)
Q Consensus 239 nlEtv--~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~tkt~i--mvGlGET~ee~~etl~~Lrelgvd~v~i~qYl~ 314 (375)
+-+.. +++...+- +...+..-.++.++-+. +.|.-++..+..+.++.+.+.|++.+.+..--
T Consensus 104 Gs~~l~~p~l~~~i~-------------~~~~~~i~vsld~~~~~v~~~Gw~~~~~~~~~~~~~l~~~G~~~iiv~~~~- 169 (241)
T PRK14024 104 GTAALENPEWCARVI-------------AEHGDRVAVGLDVRGHTLAARGWTRDGGDLWEVLERLDSAGCSRYVVTDVT- 169 (241)
T ss_pred CchHhCCHHHHHHHH-------------HHhhhhEEEEEEEeccEeccCCeeecCccHHHHHHHHHhcCCCEEEEEeec-
Confidence 64332 23333332 12212100012222111 23554566778888899999999988875221
Q ss_pred CCCCCCCccccCCHHHHHHHHHHHHHhhhhhhccc
Q 017200 315 PSKRHMPVSEYITPEAFERYRALGMEMGFRYVASG 349 (375)
Q Consensus 315 P~~~~~~v~~~v~pe~~~~l~~~a~~~gf~~~~sg 349 (375)
..++- . -| .++.++++.........++|
T Consensus 170 --~~g~~-~---G~-d~~~i~~i~~~~~ipviasG 197 (241)
T PRK14024 170 --KDGTL-T---GP-NLELLREVCARTDAPVVASG 197 (241)
T ss_pred --CCCCc-c---CC-CHHHHHHHHhhCCCCEEEeC
Confidence 11111 1 12 25555555555555555666
No 194
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=93.78 E-value=1.5 Score=47.40 Aligned_cols=138 Identities=17% Similarity=0.170 Sum_probs=91.1
Q ss_pred CCCcchHHHHHHHHHhcCCcEEEEEeeeCCC--CCcccHHHHHHHHHHHHHhCCCcEEEeecCC--CCC--------ChH
Q 017200 156 PPDPDEPTNVAEAIASWGLDYVVITSVDRDD--LADQGSGHFAQTVRKLKELKPNMLIEALVPD--FRG--------NNG 223 (375)
Q Consensus 156 ~ld~eEi~~~a~al~~~G~~eIvLTsgdr~d--l~d~G~~~~~~lir~Ik~~~p~i~Ie~l~pd--~~g--------~~e 223 (375)
.++.++.+.+|+++.+.|+..|-+.||-.-| ++-.+.+ =.+.++.|++..|++.+..+... +.| ..+
T Consensus 23 r~~~~d~l~ia~~ld~~G~~siE~~GGatf~~~~~~~~e~-p~e~lr~l~~~~~~~~lqml~Rg~n~vg~~~ypddvv~~ 101 (593)
T PRK14040 23 RLRLDDMLPIAAKLDKVGYWSLESWGGATFDACIRFLGED-PWERLRELKKAMPNTPQQMLLRGQNLLGYRHYADDVVER 101 (593)
T ss_pred ccCHHHHHHHHHHHHHcCCCEEEecCCcchhhhccccCCC-HHHHHHHHHHhCCCCeEEEEecCcceeccccCcHHHHHH
Confidence 3789999999999999999999998874332 2111112 25678888888899998877652 111 133
Q ss_pred HHHHHHHcCcccccccccchHHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEE--ecCCCHHHHHHHHHHHHH
Q 017200 224 CVREVAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIML--GCGETPDQVVSTMEKVRA 301 (375)
Q Consensus 224 ~l~~L~~aGldv~~hnlEtv~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~tkt~imv--GlGET~ee~~etl~~Lre 301 (375)
.++...+.|+|++..... ++ ..+.....++.+++ .|..+...|-+ .---|.+.+.+.++.+.+
T Consensus 102 ~v~~a~~~Gid~~rifd~--------ln----d~~~~~~ai~~ak~---~G~~~~~~i~yt~~p~~~~~~~~~~a~~l~~ 166 (593)
T PRK14040 102 FVERAVKNGMDVFRVFDA--------MN----DPRNLETALKAVRK---VGAHAQGTLSYTTSPVHTLQTWVDLAKQLED 166 (593)
T ss_pred HHHHHHhcCCCEEEEeee--------CC----cHHHHHHHHHHHHH---cCCeEEEEEEEeeCCccCHHHHHHHHHHHHH
Confidence 477778889998765421 11 13445566777777 45544333322 223466778888888888
Q ss_pred cCCcEEee
Q 017200 302 AGVDVMTF 309 (375)
Q Consensus 302 lgvd~v~i 309 (375)
.|++.|.|
T Consensus 167 ~Gad~i~i 174 (593)
T PRK14040 167 MGVDSLCI 174 (593)
T ss_pred cCCCEEEE
Confidence 88888777
No 195
>PRK12330 oxaloacetate decarboxylase; Provisional
Probab=93.71 E-value=1.4 Score=46.59 Aligned_cols=138 Identities=17% Similarity=0.175 Sum_probs=84.2
Q ss_pred CCCcchHHHHHHHHHhcCCcEEEEEeeeCCC--CCcccHHHHHHHHHHHHHhCCCcEEEeecC--CCCC--------ChH
Q 017200 156 PPDPDEPTNVAEAIASWGLDYVVITSVDRDD--LADQGSGHFAQTVRKLKELKPNMLIEALVP--DFRG--------NNG 223 (375)
Q Consensus 156 ~ld~eEi~~~a~al~~~G~~eIvLTsgdr~d--l~d~G~~~~~~lir~Ik~~~p~i~Ie~l~p--d~~g--------~~e 223 (375)
.++.++.+.+|+++.+.|+..|-+.||..-| +.-.+.+ =.+.++.+++..|++.+..+.- ++.| ...
T Consensus 23 r~~t~d~l~ia~~ld~~G~~siE~~GGatfd~~~rfl~Ed-pwerlr~lr~~~~nt~lqmL~Rg~N~vGy~~y~ddvv~~ 101 (499)
T PRK12330 23 RMAMEDMVGACEDIDNAGYWSVECWGGATFDACIRFLNED-PWERLRTFRKLMPNSRLQMLLRGQNLLGYRHYEDEVVDR 101 (499)
T ss_pred cCCHHHHHHHHHHHHhcCCCEEEecCCcchhhhhcccCCC-HHHHHHHHHHhCCCCeEEEEEcccccCCccCcchhHHHH
Confidence 3789999999999999999999998885433 1100111 2467888888889988887652 1111 144
Q ss_pred HHHHHHHcCcccccccccchHHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeE--EEecCCCHHHHHHHHHHHHH
Q 017200 224 CVREVAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSI--MLGCGETPDQVVSTMEKVRA 301 (375)
Q Consensus 224 ~l~~L~~aGldv~~hnlEtv~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~tkt~i--mvGlGET~ee~~etl~~Lre 301 (375)
.++...+.|+|++.......+ .+.....++.+++ .|..+...| +++---|.+.+++..+.+.+
T Consensus 102 fv~~a~~~Gidi~RIfd~lnd------------v~nl~~ai~~vk~---ag~~~~~~i~yt~sp~~t~e~~~~~a~~l~~ 166 (499)
T PRK12330 102 FVEKSAENGMDVFRVFDALND------------PRNLEHAMKAVKK---VGKHAQGTICYTVSPIHTVEGFVEQAKRLLD 166 (499)
T ss_pred HHHHHHHcCCCEEEEEecCCh------------HHHHHHHHHHHHH---hCCeEEEEEEEecCCCCCHHHHHHHHHHHHH
Confidence 677778889998765422222 1222333444444 233332232 33444466666677777777
Q ss_pred cCCcEEee
Q 017200 302 AGVDVMTF 309 (375)
Q Consensus 302 lgvd~v~i 309 (375)
.|++.|.|
T Consensus 167 ~Gad~I~I 174 (499)
T PRK12330 167 MGADSICI 174 (499)
T ss_pred cCCCEEEe
Confidence 77766655
No 196
>PLN03228 methylthioalkylmalate synthase; Provisional
Probab=93.60 E-value=1.3 Score=46.87 Aligned_cols=135 Identities=13% Similarity=0.185 Sum_probs=83.2
Q ss_pred CCCcchHHHHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCCC---------cEEEeecCCCCCChHHHH
Q 017200 156 PPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPN---------MLIEALVPDFRGNNGCVR 226 (375)
Q Consensus 156 ~ld~eEi~~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p~---------i~Ie~l~pd~~g~~e~l~ 226 (375)
.++.+|-++.|+.+.+.|+++|-+.. +... ..-.+.++.|.+..+. ..+.++..- ..+.++
T Consensus 102 ~fs~eeKi~Ia~~L~~~GVd~IEvG~---Pa~s----~~e~e~i~~i~~~~~~~~~~~~~l~~~i~a~~R~---~~~dId 171 (503)
T PLN03228 102 SLTPPQKLEIARQLAKLRVDIMEVGF---PGSS----EEEFEAVKTIAKTVGNEVDEETGYVPVICGIARC---KKRDIE 171 (503)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEeC---CCCC----HHHHHHHHHHHHhcccccccccccceEEeeeccc---CHhhHH
Confidence 48999999999999999999998754 2211 1234456666543221 223333321 233445
Q ss_pred HHHHc----CcccccccccchH-HHHHHhcCCCCCHHHH----HHHHHHHHHhCCCCceEEEeEEEec---CCCHHHH-H
Q 017200 227 EVAKS----GLNVFAHNIETVE-ELQSAVRDHRANFKQS----LDVLMMAKDYVPAGTLTKTSIMLGC---GETPDQV-V 293 (375)
Q Consensus 227 ~L~~a----Gldv~~hnlEtv~-rl~~~mr~r~~s~~~~----l~vl~~ak~~~p~Gl~tkt~imvGl---GET~ee~-~ 293 (375)
...++ |.+.+...+-+++ .+...++ .+.++. .+.++.|++ .|+. .+.+|. +.++.|+ .
T Consensus 172 ~a~~a~~~a~~~~V~i~i~~Sd~h~~~kl~---~s~ee~l~~~~~~V~~Ak~---~G~~---~v~f~~EDa~Rtd~efl~ 242 (503)
T PLN03228 172 AAWEALKYAKRPRILAFTSTSDIHMKYKLK---KTKEEVIEMAVSSIRYAKS---LGFH---DIQFGCEDGGRSDKEFLC 242 (503)
T ss_pred HHHHhhcccCCCEEEEEecCCHHHHHHHhC---CCHHHHHHHHHHHHHHHHH---cCCc---eEEeccccccccCHHHHH
Confidence 44444 6666766666777 3344444 345554 456667777 3543 245555 5666664 7
Q ss_pred HHHHHHHHcCCcEEee
Q 017200 294 STMEKVRAAGVDVMTF 309 (375)
Q Consensus 294 etl~~Lrelgvd~v~i 309 (375)
+.++.+.+.|++.|.+
T Consensus 243 ~~~~~a~~~Gad~I~l 258 (503)
T PLN03228 243 KILGEAIKAGATSVGI 258 (503)
T ss_pred HHHHHHHhcCCCEEEE
Confidence 8888999999999877
No 197
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=93.31 E-value=2.8 Score=39.27 Aligned_cols=164 Identities=13% Similarity=0.137 Sum_probs=95.6
Q ss_pred chHHHHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCCCcEEEeecCCCCCChHHHHHHHHcCccccccc
Q 017200 160 DEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHN 239 (375)
Q Consensus 160 eEi~~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGldv~~hn 239 (375)
.++++.|+.+.+.|+++++++-.++.... .| .-.++++.|.+.. .+.+.+ -++.. +.+.++.+.++|++.+-.+
T Consensus 30 ~dp~~~a~~~~~~g~~~i~i~dl~~~~~~-~~--~n~~~~~~i~~~~-~~pv~~-~ggi~-~~~d~~~~~~~G~~~vilg 103 (232)
T TIGR03572 30 GDPVNAARIYNAKGADELIVLDIDASKRG-RE--PLFELISNLAEEC-FMPLTV-GGGIR-SLEDAKKLLSLGADKVSIN 103 (232)
T ss_pred CCHHHHHHHHHHcCCCEEEEEeCCCcccC-CC--CCHHHHHHHHHhC-CCCEEE-ECCCC-CHHHHHHHHHcCCCEEEEC
Confidence 47888999999999999999988764221 12 2357777777654 233322 22322 6778888889998876554
Q ss_pred ccchHHHHHHhcCCCCCHHHHHHHHHHHHHhCCCC-ceEEEeEEEec----------C---CCHHHHHHHHHHHHHcCCc
Q 017200 240 IETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAG-TLTKTSIMLGC----------G---ETPDQVVSTMEKVRAAGVD 305 (375)
Q Consensus 240 lEtv~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~G-l~tkt~imvGl----------G---ET~ee~~etl~~Lrelgvd 305 (375)
-++ + . + .+.++.+.+.++.. +.+..++-.|+ | ++..+.++.++.+.+.|++
T Consensus 104 ~~~----l---~----~----~~~~~~~~~~~~~~~i~vsld~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~G~d 168 (232)
T TIGR03572 104 TAA----L---E----N----PDLIEEAARRFGSQCVVVSIDVKKELDGSDYKVYSDNGRRATGRDPVEWAREAEQLGAG 168 (232)
T ss_pred hhH----h---c----C----HHHHHHHHHHcCCceEEEEEEeccCCCCCcEEEEECCCcccCCCCHHHHHHHHHHcCCC
Confidence 211 1 1 0 13333433433221 33344433331 1 2345667888999999999
Q ss_pred EEeeecCCCCCCCCCCccccCCHHHHHHHHHHHHHhhhhhhccchhhh
Q 017200 306 VMTFGQYMRPSKRHMPVSEYITPEAFERYRALGMEMGFRYVASGPMVR 353 (375)
Q Consensus 306 ~v~i~qYl~P~~~~~~v~~~v~pe~~~~l~~~a~~~gf~~~~sgp~vr 353 (375)
.+.+....+- .+ ... + .++.++++.........++| -++
T Consensus 169 ~i~i~~i~~~---g~-~~g---~-~~~~~~~i~~~~~ipvia~G-Gi~ 207 (232)
T TIGR03572 169 EILLNSIDRD---GT-MKG---Y-DLELIKTVSDAVSIPVIALG-GAG 207 (232)
T ss_pred EEEEeCCCcc---CC-cCC---C-CHHHHHHHHhhCCCCEEEEC-CCC
Confidence 9988643211 11 011 1 25666777666666777777 444
No 198
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=93.20 E-value=2.4 Score=40.53 Aligned_cols=130 Identities=14% Similarity=0.175 Sum_probs=80.8
Q ss_pred chHHHHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCCCcEEEeecCCCCCChHHHHHHHHcCccccccc
Q 017200 160 DEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHN 239 (375)
Q Consensus 160 eEi~~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGldv~~hn 239 (375)
.+|++.|+.+.+.|+++++++--++..- +...-.++++.|.+.. ++.|.+ .+... +.+.++.+..+|++.+-.+
T Consensus 30 ~dp~~~a~~~~~~G~~~l~v~Dl~~~~~---~~~~n~~~i~~i~~~~-~~pv~~-~GGi~-s~~d~~~~~~~Ga~~vivg 103 (254)
T TIGR00735 30 GDPVELAQRYDEEGADELVFLDITASSE---GRTTMIDVVERTAETV-FIPLTV-GGGIK-SIEDVDKLLRAGADKVSIN 103 (254)
T ss_pred CCHHHHHHHHHHcCCCEEEEEcCCcccc---cChhhHHHHHHHHHhc-CCCEEE-ECCCC-CHHHHHHHHHcCCCEEEEC
Confidence 4788889999999999999997765421 1233467888887764 233332 22222 6888999999998876554
Q ss_pred ccchHHHHHHhcCCCCCHHHHHHHHHHHHHhCC-CCceEEEeEE-------------E--ecCCCHHHHHHHHHHHHHcC
Q 017200 240 IETVEELQSAVRDHRANFKQSLDVLMMAKDYVP-AGTLTKTSIM-------------L--GCGETPDQVVSTMEKVRAAG 303 (375)
Q Consensus 240 lEtv~rl~~~mr~r~~s~~~~l~vl~~ak~~~p-~Gl~tkt~im-------------v--GlGET~ee~~etl~~Lrelg 303 (375)
-++.. ..+.++.+.+.++ .-+.+..++- + |.-++.++.++.++.+.+.|
T Consensus 104 t~~~~---------------~p~~~~~~~~~~~~~~iv~slD~~~g~~~~~~~~~v~i~gw~~~~~~~~~~~~~~l~~~G 168 (254)
T TIGR00735 104 TAAVK---------------NPELIYELADRFGSQCIVVAIDAKRVYVNSYCWYEVYIYGGRESTGLDAVEWAKEVEKLG 168 (254)
T ss_pred hhHhh---------------ChHHHHHHHHHcCCCCEEEEEEeccCCCCCCccEEEEEeCCcccCCCCHHHHHHHHHHcC
Confidence 22211 1133333333333 2133333321 1 12345778889999999999
Q ss_pred CcEEeee
Q 017200 304 VDVMTFG 310 (375)
Q Consensus 304 vd~v~i~ 310 (375)
++.+.+.
T Consensus 169 ~~~iivt 175 (254)
T TIGR00735 169 AGEILLT 175 (254)
T ss_pred CCEEEEe
Confidence 9988884
No 199
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=93.11 E-value=1.7 Score=40.47 Aligned_cols=131 Identities=12% Similarity=0.139 Sum_probs=77.1
Q ss_pred cchHHHHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCCCcEEEeecCCCCCChHHHHHHHHcCcccccc
Q 017200 159 PDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAH 238 (375)
Q Consensus 159 ~eEi~~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGldv~~h 238 (375)
..++++.|+.+.+.|+++++++..+.-. .|.....++++.|.+.. .+. +.......+.+.++.+.++|++.+-.
T Consensus 29 ~~~~~~~a~~~~~~g~~~i~v~dld~~~---~g~~~~~~~i~~i~~~~-~~p--v~~~GGI~~~ed~~~~~~~Ga~~vil 102 (233)
T PRK00748 29 SDDPVAQAKAWEDQGAKWLHLVDLDGAK---AGKPVNLELIEAIVKAV-DIP--VQVGGGIRSLETVEALLDAGVSRVII 102 (233)
T ss_pred cCCHHHHHHHHHHcCCCEEEEEeCCccc---cCCcccHHHHHHHHHHC-CCC--EEEcCCcCCHHHHHHHHHcCCCEEEE
Confidence 3578889999999999999999764321 11223567888887753 233 33444445788999999999987654
Q ss_pred cccchHHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCceEEEe----EE--Eec-CCCHHHHHHHHHHHHHcCCcEEeee
Q 017200 239 NIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTS----IM--LGC-GETPDQVVSTMEKVRAAGVDVMTFG 310 (375)
Q Consensus 239 nlEtv~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~tkt~----im--vGl-GET~ee~~etl~~Lrelgvd~v~i~ 310 (375)
+-...+ . .+...++.+.. +..+.+.-+ .+ .|. ..+..+..+..+.+.+++++.+.+.
T Consensus 103 g~~~l~----~-------~~~l~ei~~~~----~~~i~vsid~k~~~v~~~g~~~~~~~~~~e~~~~~~~~g~~~ii~~ 166 (233)
T PRK00748 103 GTAAVK----N-------PELVKEACKKF----PGKIVVGLDARDGKVATDGWLETSGVTAEDLAKRFEDAGVKAIIYT 166 (233)
T ss_pred CchHHh----C-------HHHHHHHHHHh----CCCceeeeeccCCEEEEccCeecCCCCHHHHHHHHHhcCCCEEEEe
Confidence 422211 0 01111222221 221222222 21 233 3355667788888999999976664
No 200
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=93.07 E-value=2.3 Score=40.31 Aligned_cols=116 Identities=14% Similarity=0.095 Sum_probs=81.4
Q ss_pred CCcchHHHHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCCCcEEEeecCCCCCChHHHHHHHHcCcccc
Q 017200 157 PDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVF 236 (375)
Q Consensus 157 ld~eEi~~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGldv~ 236 (375)
.++++..+.++++.+.|++-+=||--.. + ..+.+.++.+.+++.+|++.|.+=+ .. +.+.++...++|.+.+
T Consensus 24 ~~~~~a~~~~~al~~gGi~~iEiT~~tp----~-a~~~i~~l~~~~~~~~p~~~vGaGT--Vl-~~e~a~~a~~aGA~Fi 95 (222)
T PRK07114 24 ADVEVAKKVIKACYDGGARVFEFTNRGD----F-AHEVFAELVKYAAKELPGMILGVGS--IV-DAATAALYIQLGANFI 95 (222)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEeCCCC----c-HHHHHHHHHHHHHhhCCCeEEeeEe--Cc-CHHHHHHHHHcCCCEE
Confidence 4789999999999999999888884221 1 1333444445555677887776522 11 7899999999998865
Q ss_pred cccccchHHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcCCcEEeee
Q 017200 237 AHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFG 310 (375)
Q Consensus 237 ~hnlEtv~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~tkt~imvGlGET~ee~~etl~~Lrelgvd~v~i~ 310 (375)
|. +..+ -++++.+++ .|+..-.+.| |..|+.+.+ ++|.+.|.+|
T Consensus 96 -------------Vs-P~~~----~~v~~~~~~---~~i~~iPG~~-----TpsEi~~A~----~~Ga~~vKlF 139 (222)
T PRK07114 96 -------------VT-PLFN----PDIAKVCNR---RKVPYSPGCG-----SLSEIGYAE----ELGCEIVKLF 139 (222)
T ss_pred -------------EC-CCCC----HHHHHHHHH---cCCCEeCCCC-----CHHHHHHHH----HCCCCEEEEC
Confidence 33 2322 367777777 4677766765 888887765 6899998887
No 201
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=92.97 E-value=2.4 Score=40.91 Aligned_cols=164 Identities=18% Similarity=0.163 Sum_probs=85.3
Q ss_pred cccHHHHHHHHHHHHHhCCCcEEEeec-CC-CCCChHHHHHHHHcCcccccccccchHHHHHHhcCCCCCHHHHHHHHHH
Q 017200 189 DQGSGHFAQTVRKLKELKPNMLIEALV-PD-FRGNNGCVREVAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMM 266 (375)
Q Consensus 189 d~G~~~~~~lir~Ik~~~p~i~Ie~l~-pd-~~g~~e~l~~L~~aGldv~~hnlEtv~rl~~~mr~r~~s~~~~l~vl~~ 266 (375)
+.|.+.|.+.++..++..++..+-+.+ +. ...-.+.++.+.++|.|.+..|+-+-... .-++-..+.+...++++.
T Consensus 79 ~~g~~~~~~~i~~~~~~~~~~pvi~si~g~~~~~~~~~a~~~~~~G~d~ielN~~cP~~~--~~~~~~~~~~~~~eiv~~ 156 (289)
T cd02810 79 NLGLDVWLQDIAKAKKEFPGQPLIASVGGSSKEDYVELARKIERAGAKALELNLSCPNVG--GGRQLGQDPEAVANLLKA 156 (289)
T ss_pred CcCHHHHHHHHHHHHhccCCCeEEEEeccCCHHHHHHHHHHHHHhCCCEEEEEcCCCCCC--CCcccccCHHHHHHHHHH
Confidence 344566666665554432222222211 11 00013456666777888777665432100 000012346677788888
Q ss_pred HHHhCCCCceEEEeEEEec--CCCHHHHHHHHHHHHHcCCcEEeeecCCCC----CCCCCC--------ccc-cCCHHHH
Q 017200 267 AKDYVPAGTLTKTSIMLGC--GETPDQVVSTMEKVRAAGVDVMTFGQYMRP----SKRHMP--------VSE-YITPEAF 331 (375)
Q Consensus 267 ak~~~p~Gl~tkt~imvGl--GET~ee~~etl~~Lrelgvd~v~i~qYl~P----~~~~~~--------v~~-~v~pe~~ 331 (375)
+++.. .--+++.+ +.+++|..+.++.+.+.|+|.+.+..-... .....+ +.. .+.|-..
T Consensus 157 vr~~~------~~pv~vKl~~~~~~~~~~~~a~~l~~~Gad~i~~~~~~~~~~~~~~~~~~~~~~~~~g~sg~~~~~~~~ 230 (289)
T cd02810 157 VKAAV------DIPLLVKLSPYFDLEDIVELAKAAERAGADGLTAINTISGRVVDLKTVGPGPKRGTGGLSGAPIRPLAL 230 (289)
T ss_pred HHHcc------CCCEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEEcccCccceecccCccccCCCCCccCcHHHHHHHH
Confidence 88742 12234443 678889999999999999999988533211 000000 000 1223345
Q ss_pred HHHHHHHHHh--hhhhhccchhhhhhcchhHH
Q 017200 332 ERYRALGMEM--GFRYVASGPMVRSSYKVVGW 361 (375)
Q Consensus 332 ~~l~~~a~~~--gf~~~~sgp~vrssy~a~~~ 361 (375)
+.++++.... ....+++| -+++.-.|.++
T Consensus 231 ~~v~~i~~~~~~~ipiia~G-GI~~~~da~~~ 261 (289)
T cd02810 231 RWVARLAARLQLDIPIIGVG-GIDSGEDVLEM 261 (289)
T ss_pred HHHHHHHHhcCCCCCEEEEC-CCCCHHHHHHH
Confidence 6666666666 56666777 55554444433
No 202
>PRK06806 fructose-bisphosphate aldolase; Provisional
Probab=92.92 E-value=5.1 Score=39.26 Aligned_cols=168 Identities=9% Similarity=0.073 Sum_probs=95.8
Q ss_pred CCcchHHHHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCCCcEEEeecCCCCCChHHHHHHHHcCcccc
Q 017200 157 PDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVF 236 (375)
Q Consensus 157 ld~eEi~~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGldv~ 236 (375)
.+.+.+...+++..+.+.--|+-++...-.+ .|.+.+..+++...+.. .+.|. +.-|+..+.+.++...++|.+++
T Consensus 26 ~n~e~~~avi~aAe~~~~Pvii~~~~~~~~~--~~~~~~~~~~~~~a~~~-~vpv~-lHlDH~~~~e~i~~Al~~G~tsV 101 (281)
T PRK06806 26 ANMEMVMGAIKAAEELNSPIILQIAEVRLNH--SPLHLIGPLMVAAAKQA-KVPVA-VHFDHGMTFEKIKEALEIGFTSV 101 (281)
T ss_pred CCHHHHHHHHHHHHHhCCCEEEEcCcchhcc--CChHHHHHHHHHHHHHC-CCCEE-EECCCCCCHHHHHHHHHcCCCEE
Confidence 3567777888888888877666665543333 34667777777766544 23332 55566557889999999998877
Q ss_pred cccccchHHHHHHhcCCCCCHHHHHHHHHHHHHhC-CCCceEEEeEEEec-C-C---------CHHHHHHHHHHHHHcCC
Q 017200 237 AHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYV-PAGTLTKTSIMLGC-G-E---------TPDQVVSTMEKVRAAGV 304 (375)
Q Consensus 237 ~hnlEtv~rl~~~mr~r~~s~~~~l~vl~~ak~~~-p~Gl~tkt~imvGl-G-E---------T~ee~~etl~~Lrelgv 304 (375)
.. +....++++.++.-+.+.++. +.|+.+... +|+ | + +--+..+..++.++.|+
T Consensus 102 m~------------d~s~~~~~eni~~t~~v~~~a~~~gv~veaE--~ghlG~~d~~~~~~g~s~t~~eea~~f~~~tg~ 167 (281)
T PRK06806 102 MF------------DGSHLPLEENIQKTKEIVELAKQYGATVEAE--IGRVGGSEDGSEDIEMLLTSTTEAKRFAEETDV 167 (281)
T ss_pred EE------------cCCCCCHHHHHHHHHHHHHHHHHcCCeEEEE--eeeECCccCCcccccceeCCHHHHHHHHHhhCC
Confidence 53 223344555444444433332 135555433 233 3 1 12244455666777899
Q ss_pred cEEee--ecCCCCCCCCCCccccCCHHHHHHHHHHHHHhhhhhhccc
Q 017200 305 DVMTF--GQYMRPSKRHMPVSEYITPEAFERYRALGMEMGFRYVASG 349 (375)
Q Consensus 305 d~v~i--~qYl~P~~~~~~v~~~v~pe~~~~l~~~a~~~gf~~~~sg 349 (375)
|++.+ |+.. ++.+.. .+=.++.|+++......-.|+-|
T Consensus 168 DyLAvaiG~~h-g~~~~~------~~l~~~~L~~i~~~~~iPlV~hG 207 (281)
T PRK06806 168 DALAVAIGNAH-GMYNGD------PNLRFDRLQEINDVVHIPLVLHG 207 (281)
T ss_pred CEEEEccCCCC-CCCCCC------CccCHHHHHHHHHhcCCCEEEEC
Confidence 99988 6432 322111 12246666666665555444433
No 203
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=92.88 E-value=2.2 Score=40.09 Aligned_cols=112 Identities=18% Similarity=0.217 Sum_probs=78.7
Q ss_pred CCcchHHHHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCCCcEEEeecCCCCCChHHHHHHHHcCcccc
Q 017200 157 PDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVF 236 (375)
Q Consensus 157 ld~eEi~~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGldv~ 236 (375)
.++++.++.++++.+.|++-|=+|- +. + .-.+.|+.+++.+|++.|-+=+ .. +.+.++...++|.+.+
T Consensus 24 ~~~~~a~~i~~al~~~Gi~~iEitl--~~--~-----~~~~~I~~l~~~~p~~~IGAGT--Vl-~~~~a~~a~~aGA~Fi 91 (212)
T PRK05718 24 NKLEDAVPLAKALVAGGLPVLEVTL--RT--P-----AALEAIRLIAKEVPEALIGAGT--VL-NPEQLAQAIEAGAQFI 91 (212)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEec--CC--c-----cHHHHHHHHHHHCCCCEEEEee--cc-CHHHHHHHHHcCCCEE
Confidence 5789999999999999999998882 11 1 1357889999889987665421 11 6789999999999865
Q ss_pred cccccchHHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcCCcEEeee
Q 017200 237 AHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFG 310 (375)
Q Consensus 237 ~hnlEtv~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~tkt~imvGlGET~ee~~etl~~Lrelgvd~v~i~ 310 (375)
+. +..+. ++++.+++ .|+..-.+.+ |..|+.+ ..++|.+.+.+|
T Consensus 92 -------------vs-P~~~~----~vi~~a~~---~~i~~iPG~~-----TptEi~~----a~~~Ga~~vKlF 135 (212)
T PRK05718 92 -------------VS-PGLTP----PLLKAAQE---GPIPLIPGVS-----TPSELML----GMELGLRTFKFF 135 (212)
T ss_pred -------------EC-CCCCH----HHHHHHHH---cCCCEeCCCC-----CHHHHHH----HHHCCCCEEEEc
Confidence 22 23222 67777777 3565554553 7777443 557888888875
No 204
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=92.83 E-value=3.9 Score=37.27 Aligned_cols=113 Identities=19% Similarity=0.297 Sum_probs=78.9
Q ss_pred CCcchHHHHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCCCcEEEeecCCCCCChHHHHHHHHcCcccc
Q 017200 157 PDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVF 236 (375)
Q Consensus 157 ld~eEi~~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGldv~ 236 (375)
.++++....++++.+.|++-|.++.-+.. -.+.++.+++.+|++.|.+-+ .. +.+.++...++|.|.+
T Consensus 13 ~~~~~~~~~~~~l~~~G~~~vev~~~~~~---------~~~~i~~l~~~~~~~~iGag~--v~-~~~~~~~a~~~Ga~~i 80 (190)
T cd00452 13 DDAEDALALAEALIEGGIRAIEITLRTPG---------ALEAIRALRKEFPEALIGAGT--VL-TPEQADAAIAAGAQFI 80 (190)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEeCCChh---------HHHHHHHHHHHCCCCEEEEEe--CC-CHHHHHHHHHcCCCEE
Confidence 46889999999999999999998843211 355889999988876665321 11 5788999999999876
Q ss_pred cccccchHHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcCCcEEeeec
Q 017200 237 AHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQ 311 (375)
Q Consensus 237 ~hnlEtv~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~tkt~imvGlGET~ee~~etl~~Lrelgvd~v~i~q 311 (375)
.. +..+ .++++.+++. |+ .+|+|.- |.+|..+.+ +.|+|++.+++
T Consensus 81 ~~--------------p~~~----~~~~~~~~~~---~~----~~i~gv~-t~~e~~~A~----~~Gad~i~~~p 125 (190)
T cd00452 81 VS--------------PGLD----PEVVKAANRA---GI----PLLPGVA-TPTEIMQAL----ELGADIVKLFP 125 (190)
T ss_pred Ec--------------CCCC----HHHHHHHHHc---CC----cEECCcC-CHHHHHHHH----HCCCCEEEEcC
Confidence 32 1111 2456666662 33 4567776 888876654 58999999863
No 205
>TIGR00977 LeuA_rel 2-isopropylmalate synthase/homocitrate synthase family protein. This model represents uncharacterized proteins related to 2-isopropylmalate synthases and homocitrate synthases but phylogenetically distint. Each species represented in the seed alignment also has a member of a known family of 2-isopropylmalate synthases.
Probab=92.82 E-value=6.3 Score=42.03 Aligned_cols=140 Identities=17% Similarity=0.233 Sum_probs=93.3
Q ss_pred CCCcchHHHHHHHHHhcCCcEEEEEe-eeCCCCCcccHHHHHHHHHHHHHhC-CCcEEEeec----CCCC-CChHHHHHH
Q 017200 156 PPDPDEPTNVAEAIASWGLDYVVITS-VDRDDLADQGSGHFAQTVRKLKELK-PNMLIEALV----PDFR-GNNGCVREV 228 (375)
Q Consensus 156 ~ld~eEi~~~a~al~~~G~~eIvLTs-gdr~dl~d~G~~~~~~lir~Ik~~~-p~i~Ie~l~----pd~~-g~~e~l~~L 228 (375)
+++.++-++.++.+.+.|+++|-+.- .-.+ . =.+.++.|.+.. .+..|.++. ++.. .++..++.+
T Consensus 19 ~~s~eeKl~Ia~~L~~~GVd~IE~G~p~~s~-------~-d~~~v~~i~~~~~~~~~i~~~~r~~r~~~~~~~d~~~ea~ 90 (526)
T TIGR00977 19 SFSLEDKIRIAERLDDLGIHYIEGGWPGANP-------K-DVQFFWQLKEMNFKNAKIVAFCSTRRPHKKVEEDKMLQAL 90 (526)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEeCCCCCh-------H-HHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchHHHHHHH
Confidence 58999999999999999999998741 1111 1 123455554433 245666554 2321 135678999
Q ss_pred HHcCcccccccccchH-HHHHHhcCCCCCHHHHHHH----HHHHHHhCCCCceEEEeEE---EecCCCHHHHHHHHHHHH
Q 017200 229 AKSGLNVFAHNIETVE-ELQSAVRDHRANFKQSLDV----LMMAKDYVPAGTLTKTSIM---LGCGETPDQVVSTMEKVR 300 (375)
Q Consensus 229 ~~aGldv~~hnlEtv~-rl~~~mr~r~~s~~~~l~v----l~~ak~~~p~Gl~tkt~im---vGlGET~ee~~etl~~Lr 300 (375)
.++|.+++...+-+++ .+...++ .+.++.++. ++.|++ .|+.+.-+.+ -|.--+.+.+++.++.+.
T Consensus 91 ~~~~~~~v~i~~~~Sd~h~~~~l~---~s~ee~l~~~~~~v~~ak~---~g~~V~~~~e~f~D~~r~~~~~l~~~~~~a~ 164 (526)
T TIGR00977 91 IKAETPVVTIFGKSWDLHVLEALQ---TTLEENLAMIYDTVAYLKR---QGDEVIYDAEHFFDGYKANPEYALATLATAQ 164 (526)
T ss_pred hcCCCCEEEEEeCCCHHHHHHHhC---CCHHHHHHHHHHHHHHHHH---cCCeEEEEeeeeeecccCCHHHHHHHHHHHH
Confidence 9999998888777777 4444444 456666655 667777 4565543333 444446788889999999
Q ss_pred HcCCcEEee
Q 017200 301 AAGVDVMTF 309 (375)
Q Consensus 301 elgvd~v~i 309 (375)
+.|++.+.+
T Consensus 165 ~aGad~i~i 173 (526)
T TIGR00977 165 QAGADWLVL 173 (526)
T ss_pred hCCCCeEEE
Confidence 999999887
No 206
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=92.61 E-value=4.3 Score=36.90 Aligned_cols=76 Identities=12% Similarity=0.242 Sum_probs=50.7
Q ss_pred CCcchHHHHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCC-CcEEEeecCCCCCChHHHHHHHHcCccc
Q 017200 157 PDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKP-NMLIEALVPDFRGNNGCVREVAKSGLNV 235 (375)
Q Consensus 157 ld~eEi~~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p-~i~Ie~l~pd~~g~~e~l~~L~~aGldv 235 (375)
.|++...+.++++.+.|+++|.|--.|....+. ...-.+.+++|++..+ .+.+.+.+-+ ..+.++.+.++|+|.
T Consensus 8 ~~~~~~~~~~~~~~~~g~d~i~~~~~Dg~~~~~--~~~~~~~v~~i~~~~~~~v~v~lm~~~---~~~~~~~~~~~gadg 82 (210)
T TIGR01163 8 ADFARLGEEVKAVEEAGADWIHVDVMDGHFVPN--LTFGPPVLEALRKYTDLPIDVHLMVEN---PDRYIEDFAEAGADI 82 (210)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCC--cccCHHHHHHHHhcCCCcEEEEeeeCC---HHHHHHHHHHcCCCE
Confidence 577789999999999999999996334333332 2223577888876421 2224444433 356788889999997
Q ss_pred cc
Q 017200 236 FA 237 (375)
Q Consensus 236 ~~ 237 (375)
+.
T Consensus 83 v~ 84 (210)
T TIGR01163 83 IT 84 (210)
T ss_pred EE
Confidence 54
No 207
>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]
Probab=92.59 E-value=1.3 Score=41.62 Aligned_cols=112 Identities=22% Similarity=0.272 Sum_probs=82.6
Q ss_pred CCcchHHHHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCCCcEEEeecCCCCCChHHHHHHHHcCcccc
Q 017200 157 PDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVF 236 (375)
Q Consensus 157 ld~eEi~~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGldv~ 236 (375)
.++||.+..++++.+.|++-|-||=- . + .-.+.|+.|++.+|++.|.+=+ .. +.++++.+.++|.+.+
T Consensus 22 ~~~e~a~~~a~Ali~gGi~~IEITl~--s--p-----~a~e~I~~l~~~~p~~lIGAGT--VL-~~~q~~~a~~aGa~fi 89 (211)
T COG0800 22 DDVEEALPLAKALIEGGIPAIEITLR--T--P-----AALEAIRALAKEFPEALIGAGT--VL-NPEQARQAIAAGAQFI 89 (211)
T ss_pred CCHHHHHHHHHHHHHcCCCeEEEecC--C--C-----CHHHHHHHHHHhCcccEEcccc--cc-CHHHHHHHHHcCCCEE
Confidence 57899999999999999998888831 1 1 1367899999999976665421 11 7899999999998865
Q ss_pred cccccchHHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcCCcEEeee
Q 017200 237 AHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFG 310 (375)
Q Consensus 237 ~hnlEtv~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~tkt~imvGlGET~ee~~etl~~Lrelgvd~v~i~ 310 (375)
+. ++.+ -++++.+.+ .|+.+.-+++ |.-|+...+ ++|.+.+.||
T Consensus 90 -------------Vs-P~~~----~ev~~~a~~---~~ip~~PG~~-----TptEi~~Al----e~G~~~lK~F 133 (211)
T COG0800 90 -------------VS-PGLN----PEVAKAANR---YGIPYIPGVA-----TPTEIMAAL----ELGASALKFF 133 (211)
T ss_pred -------------EC-CCCC----HHHHHHHHh---CCCcccCCCC-----CHHHHHHHH----HcChhheeec
Confidence 22 2333 267777777 4688877775 888887665 6788888876
No 208
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=92.32 E-value=1.9 Score=40.13 Aligned_cols=131 Identities=11% Similarity=0.137 Sum_probs=77.2
Q ss_pred cchHHHHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCCCcEEEeecCCCCCChHHHHHHHHcCcccccc
Q 017200 159 PDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAH 238 (375)
Q Consensus 159 ~eEi~~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGldv~~h 238 (375)
..++.+.|+.+.+.|++++++..-+.. +. |.....++++.|++..+ +.+ .......+.+.++.+.++|+|.+-.
T Consensus 28 ~~dp~~~a~~~~~~g~d~l~v~dl~~~-~~--~~~~~~~~i~~i~~~~~-~pv--~~~GgI~~~e~~~~~~~~Gad~vvi 101 (234)
T cd04732 28 SDDPVEVAKKWEEAGAKWLHVVDLDGA-KG--GEPVNLELIEEIVKAVG-IPV--QVGGGIRSLEDIERLLDLGVSRVII 101 (234)
T ss_pred CCCHHHHHHHHHHcCCCEEEEECCCcc-cc--CCCCCHHHHHHHHHhcC-CCE--EEeCCcCCHHHHHHHHHcCCCEEEE
Confidence 468899999999999999999844331 11 12234678888877642 333 3333233788999999999987654
Q ss_pred cccchHHHHHHhcCCCCCHHHHHHHHHHHHHhCCC-CceEEEeE----EE--ec-CCCHHHHHHHHHHHHHcCCcEEeee
Q 017200 239 NIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPA-GTLTKTSI----ML--GC-GETPDQVVSTMEKVRAAGVDVMTFG 310 (375)
Q Consensus 239 nlEtv~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~-Gl~tkt~i----mv--Gl-GET~ee~~etl~~Lrelgvd~v~i~ 310 (375)
+-+..+ + .+.++.+.+.++. -+.+..++ ++ |. ..+..+..+.++.+.+.|++.+.+.
T Consensus 102 gs~~l~-----------d----p~~~~~i~~~~g~~~i~~sid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ga~~iii~ 166 (234)
T cd04732 102 GTAAVK-----------N----PELVKELLKEYGGERIVVGLDAKDGKVATKGWLETSEVSLEELAKRFEELGVKAIIYT 166 (234)
T ss_pred CchHHh-----------C----hHHHHHHHHHcCCceEEEEEEeeCCEEEECCCeeecCCCHHHHHHHHHHcCCCEEEEE
Confidence 322111 0 1222333332221 12222221 11 11 3456677788888999999988875
No 209
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=92.29 E-value=1.4 Score=47.65 Aligned_cols=81 Identities=15% Similarity=0.194 Sum_probs=56.0
Q ss_pred CCcchHHHHHHHHHhcCCcEEEEEeeeCCCC--CcccHHHHHHHHHHHHHhCCCcEEEeecC-----CCCC-C----hHH
Q 017200 157 PDPDEPTNVAEAIASWGLDYVVITSVDRDDL--ADQGSGHFAQTVRKLKELKPNMLIEALVP-----DFRG-N----NGC 224 (375)
Q Consensus 157 ld~eEi~~~a~al~~~G~~eIvLTsgdr~dl--~d~G~~~~~~lir~Ik~~~p~i~Ie~l~p-----d~~g-~----~e~ 224 (375)
+..++++..|+++.+.|+..+-+.||..-|- .-.+.+ =.+.++.+++..|++.+..|.- .+.. . ...
T Consensus 23 ~~t~d~~~ia~~~d~~g~~siE~~gGatfd~~~rfl~ed-pwerl~~~r~~~pnt~lqmL~Rg~N~vGy~~~~d~vv~~~ 101 (596)
T PRK14042 23 MRTEDMLPICNKMDDVGFWAMEVWGGATFDACLRFLKED-PWSRLRQLRQALPNTQLSMLLRGQNLLGYRNYADDVVRAF 101 (596)
T ss_pred CCHHHHHHHHHHHHhcCCCEEEeeCCcccceeecccCCC-HHHHHHHHHHhCCCCceEEEeccccccccccCChHHHHHH
Confidence 6789999999999999999999999964322 100111 1467888888889998887651 1110 1 335
Q ss_pred HHHHHHcCcccccc
Q 017200 225 VREVAKSGLNVFAH 238 (375)
Q Consensus 225 l~~L~~aGldv~~h 238 (375)
++..++.|+|++-.
T Consensus 102 v~~a~~~Gidv~Ri 115 (596)
T PRK14042 102 VKLAVNNGVDVFRV 115 (596)
T ss_pred HHHHHHcCCCEEEE
Confidence 67778889987744
No 210
>PF05853 DUF849: Prokaryotic protein of unknown function (DUF849); InterPro: IPR008567 This family consists of several hypothetical prokaryotic proteins with no known function.; PDB: 3C6C_A 2Y7G_B 2Y7F_B 2Y7D_D 2Y7E_B 3LOT_A 3FA5_B 3NO5_C 3E02_A 3E49_B ....
Probab=92.22 E-value=4 Score=39.75 Aligned_cols=142 Identities=18% Similarity=0.255 Sum_probs=82.9
Q ss_pred CCCcchHHHHHHHHHhcCCcEEEEEeeeCCC-CCcccHHHHHHHHHHHHHhCCCcEEEeecCCCCC-C-hHHHHHHHHcC
Q 017200 156 PPDPDEPTNVAEAIASWGLDYVVITSVDRDD-LADQGSGHFAQTVRKLKELKPNMLIEALVPDFRG-N-NGCVREVAKSG 232 (375)
Q Consensus 156 ~ld~eEi~~~a~al~~~G~~eIvLTsgdr~d-l~d~G~~~~~~lir~Ik~~~p~i~Ie~l~pd~~g-~-~e~l~~L~~aG 232 (375)
|.+++|+.+.|.+..+.|..-|++=.=|.+| .+....+.|.++++.|++..|++.|...++.-.+ + .+.++.+....
T Consensus 22 P~tpeEia~~A~~c~~AGAa~vH~H~R~~~~G~~s~d~~~~~e~~~~IR~~~pd~iv~~Ttg~~~~~~~~~R~~~v~~~~ 101 (272)
T PF05853_consen 22 PITPEEIAADAVACYEAGAAIVHIHARDDEDGRPSLDPELYAEVVEAIRAACPDLIVQPTTGGGGGPDPEERLAHVEAWK 101 (272)
T ss_dssp --SHHHHHHHHHHHHHHTESEEEE-EE-TTTS-EE--HHHHHHHHHHHHHHSTTSEEEEESSTTTTSGHHHHCTHHHHH-
T ss_pred CCCHHHHHHHHHHHHHcCCcEEEeecCCCCCCCcCCCHHHHHHHHHHHHHHCCCeEEEeCCCCCCCCCHHHHHHHHHhcC
Confidence 6899999999999999999888776542222 1212368899999999999999999977764221 2 33344443324
Q ss_pred ccccccc----------------ccchHHHHHHhcCCC-------CCHHHHHHHHHHHHHhCCCCc---eEEEeEEEec-
Q 017200 233 LNVFAHN----------------IETVEELQSAVRDHR-------ANFKQSLDVLMMAKDYVPAGT---LTKTSIMLGC- 285 (375)
Q Consensus 233 ldv~~hn----------------lEtv~rl~~~mr~r~-------~s~~~~l~vl~~ak~~~p~Gl---~tkt~imvGl- 285 (375)
+|....+ .+.+.++++.++.++ ++... ++.+..+.+ .|+ ..--.+++|.
T Consensus 102 pd~asl~~gs~n~~~~~~~~~n~~~~~~~~~~~~~e~Gi~pe~ev~d~~~-l~~~~~l~~---~G~l~~p~~~~~vlG~~ 177 (272)
T PF05853_consen 102 PDMASLNPGSMNFGTRDRVYINTPADARELARRMRERGIKPEIEVFDPGH-LRNARRLIE---KGLLPGPLLVNFVLGVP 177 (272)
T ss_dssp -SEEEEE-S-EEESGGCSEE---HHHHHHHHHHHHHTT-EEEEEESSHHH-HHHHHHHHH---TTSS-SSEEEEEEES-T
T ss_pred CCeEEecccccccccCCceecCCHHHHHHHHHHHHHcCCeEEEEEEcHHH-HHHHHHHHH---CCCCCCCeEEEEcccCC
Confidence 5544332 223456666665332 33333 333333444 243 4566677777
Q ss_pred C---CCHHHHHHHHHHHHH
Q 017200 286 G---ETPDQVVSTMEKVRA 301 (375)
Q Consensus 286 G---ET~ee~~etl~~Lre 301 (375)
| -|.+++...++.+.+
T Consensus 178 ~g~~~~~~~l~~~l~~l~~ 196 (272)
T PF05853_consen 178 GGMPATPENLLAMLDMLPE 196 (272)
T ss_dssp TS--S-HHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHhcCC
Confidence 4 677777777777766
No 211
>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....
Probab=92.22 E-value=2 Score=40.09 Aligned_cols=156 Identities=16% Similarity=0.227 Sum_probs=93.4
Q ss_pred CCcchHHHHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCCC--cEEEeecCCCCCChHHHHHHHHcCcc
Q 017200 157 PDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPN--MLIEALVPDFRGNNGCVREVAKSGLN 234 (375)
Q Consensus 157 ld~eEi~~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p~--i~Ie~l~pd~~g~~e~l~~L~~aGld 234 (375)
.|+..+.+.++++.+.|++.+++==.|..-.|..++ =.++++.|++.. + +.+++.+-+ ....++.++++|+|
T Consensus 9 ad~~~l~~~i~~l~~~g~d~lHiDiMDg~fvpn~~~--g~~~i~~i~~~~-~~~~DvHLMv~~---P~~~i~~~~~~g~~ 82 (201)
T PF00834_consen 9 ADFLNLEEEIKRLEEAGADWLHIDIMDGHFVPNLTF--GPDIIKAIRKIT-DLPLDVHLMVEN---PERYIEEFAEAGAD 82 (201)
T ss_dssp S-GGGHHHHHHHHHHTT-SEEEEEEEBSSSSSSB-B---HHHHHHHHTTS-SSEEEEEEESSS---GGGHHHHHHHHT-S
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEeecccccCCcccC--CHHHHHHHhhcC-CCcEEEEeeecc---HHHHHHHHHhcCCC
Confidence 467788999999999999999988777655555322 256788887763 3 345555433 24679999999999
Q ss_pred cccccccchHHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcCCcEEeeecCCC
Q 017200 235 VFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQYMR 314 (375)
Q Consensus 235 v~~hnlEtv~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~tkt~imvGlGET~ee~~etl~~Lrelgvd~v~i~qYl~ 314 (375)
.+...+|+.+. ..++++.+|+ .| .++++.+.-+-..+.+...+ + .+|.|.+-. ..
T Consensus 83 ~i~~H~E~~~~--------------~~~~i~~ik~---~g--~k~GialnP~T~~~~~~~~l----~-~vD~VlvMs-V~ 137 (201)
T PF00834_consen 83 YITFHAEATED--------------PKETIKYIKE---AG--IKAGIALNPETPVEELEPYL----D-QVDMVLVMS-VE 137 (201)
T ss_dssp EEEEEGGGTTT--------------HHHHHHHHHH---TT--SEEEEEE-TTS-GGGGTTTG----C-CSSEEEEES-S-
T ss_pred EEEEcccchhC--------------HHHHHHHHHH---hC--CCEEEEEECCCCchHHHHHh----h-hcCEEEEEE-ec
Confidence 99888885432 2356677777 46 46777776653333332222 1 477777632 25
Q ss_pred CCCCCCCccccCCHHHHHHHHHHHHHhhhh
Q 017200 315 PSKRHMPVSEYITPEAFERYRALGMEMGFR 344 (375)
Q Consensus 315 P~~~~~~v~~~v~pe~~~~l~~~a~~~gf~ 344 (375)
|+..+-+..+. .-++.++++++..+.|+.
T Consensus 138 PG~~Gq~f~~~-~~~KI~~l~~~~~~~~~~ 166 (201)
T PF00834_consen 138 PGFGGQKFIPE-VLEKIRELRKLIPENGLD 166 (201)
T ss_dssp TTTSSB--HGG-HHHHHHHHHHHHHHHTCG
T ss_pred CCCCcccccHH-HHHHHHHHHHHHHhcCCc
Confidence 75444333221 235677777777775543
No 212
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=91.83 E-value=3.6 Score=43.25 Aligned_cols=137 Identities=17% Similarity=0.175 Sum_probs=79.6
Q ss_pred CCcchHHHHHHHHHhcCCcEEEEEeeeCCC--CCcccHHHHHHHHHHHHHhCCCcEEEeecCC--CCC------C--hHH
Q 017200 157 PDPDEPTNVAEAIASWGLDYVVITSVDRDD--LADQGSGHFAQTVRKLKELKPNMLIEALVPD--FRG------N--NGC 224 (375)
Q Consensus 157 ld~eEi~~~a~al~~~G~~eIvLTsgdr~d--l~d~G~~~~~~lir~Ik~~~p~i~Ie~l~pd--~~g------~--~e~ 224 (375)
++.++++..|+++.+.|+..|-+.||-.-| +.-.+.+ =.+.++.+++..|++.+..|.-. +.| + ...
T Consensus 32 ~~t~d~l~ia~~ld~~G~~siE~wGGAtfd~~~rfl~ed-pwerlr~~r~~~~nt~lqmLlRG~n~vgy~~ypddvv~~f 110 (468)
T PRK12581 32 LSIEDMLPVLTILDKIGYYSLECWGGATFDACIRFLNED-PWERLRTLKKGLPNTRLQMLLRGQNLLGYRHYADDIVDKF 110 (468)
T ss_pred CCHHHHHHHHHHHHhcCCCEEEecCCcchhhhhcccCCC-HHHHHHHHHHhCCCCceeeeeccccccCccCCcchHHHHH
Confidence 778999999999999999999999986444 1110011 14678888888898888765431 112 1 223
Q ss_pred HHHHHHcCcccccccccchHHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEec--CCCHHHHHHHHHHHHHc
Q 017200 225 VREVAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGC--GETPDQVVSTMEKVRAA 302 (375)
Q Consensus 225 l~~L~~aGldv~~hnlEtv~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~tkt~imvGl--GET~ee~~etl~~Lrel 302 (375)
++..++.|+|++-.. ..++ ..+.....++.+|+ .|..+...|.+=. .-|.+-+++..+.+.+.
T Consensus 111 v~~a~~~Gidi~Rif--------d~ln----d~~n~~~ai~~ak~---~G~~~~~~i~yt~sp~~t~~y~~~~a~~l~~~ 175 (468)
T PRK12581 111 ISLSAQNGIDVFRIF--------DALN----DPRNIQQALRAVKK---TGKEAQLCIAYTTSPVHTLNYYLSLVKELVEM 175 (468)
T ss_pred HHHHHHCCCCEEEEc--------ccCC----CHHHHHHHHHHHHH---cCCEEEEEEEEEeCCcCcHHHHHHHHHHHHHc
Confidence 667778888876432 1222 23344445555555 3443332221111 22444455666666666
Q ss_pred CCcEEee
Q 017200 303 GVDVMTF 309 (375)
Q Consensus 303 gvd~v~i 309 (375)
|++.|.|
T Consensus 176 Gad~I~I 182 (468)
T PRK12581 176 GADSICI 182 (468)
T ss_pred CCCEEEE
Confidence 6666555
No 213
>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist. This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase.
Probab=91.71 E-value=8.5 Score=37.69 Aligned_cols=167 Identities=18% Similarity=0.197 Sum_probs=94.5
Q ss_pred CCcchHHHHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCCCcEEEeecCCCCCChHHHHHHHHcCcccc
Q 017200 157 PDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVF 236 (375)
Q Consensus 157 ld~eEi~~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGldv~ 236 (375)
.+.+.+...++++.+.+.--|+..+...-++. +|...+...++.+.+....+.|- +.-|...+.+.++...++|.+++
T Consensus 24 ~n~e~~~avi~aAe~~~~PvIl~~~~~~~~~~-~~~~~~~~~~~~~a~~~~~vpv~-lhlDH~~~~e~i~~ai~~Gf~sV 101 (282)
T TIGR01859 24 NNLEWTQAILEAAEEENSPVIIQVSEGAIKYM-GGYKMAVAMVKTLIERMSIVPVA-LHLDHGSSYESCIKAIKAGFSSV 101 (282)
T ss_pred CCHHHHHHHHHHHHHhCCCEEEEcCcchhhcc-CcHHHHHHHHHHHHHHCCCCeEE-EECCCCCCHHHHHHHHHcCCCEE
Confidence 35677778888888888887877766543332 34677888888887765323332 44465556788889999998765
Q ss_pred cccccchHHHHHHhcCCCCCHHHHH----HHHHHHHHhCCCCceEEEeEEEec--CCCH---------HHHHHHHHHHHH
Q 017200 237 AHNIETVEELQSAVRDHRANFKQSL----DVLMMAKDYVPAGTLTKTSIMLGC--GETP---------DQVVSTMEKVRA 301 (375)
Q Consensus 237 ~hnlEtv~rl~~~mr~r~~s~~~~l----~vl~~ak~~~p~Gl~tkt~imvGl--GET~---------ee~~etl~~Lre 301 (375)
-. +....++++.+ ++.+.++. .|+.+. .=+|. |+.+ .+..+..+++++
T Consensus 102 mi------------d~s~l~~~eni~~t~~v~~~a~~---~gv~Ve--~ElG~~gg~ed~~~g~~~~~t~~eea~~f~~~ 164 (282)
T TIGR01859 102 MI------------DGSHLPFEENLALTKKVVEIAHA---KGVSVE--AELGTLGGIEDGVDEKEAELADPDEAEQFVKE 164 (282)
T ss_pred EE------------CCCCCCHHHHHHHHHHHHHHHHH---cCCEEE--EeeCCCcCccccccccccccCCHHHHHHHHHH
Confidence 32 11233444444 44444444 243322 12233 2111 145556677777
Q ss_pred cCCcEEe--eecCCCCCCCCCCccccCCHHHHHHHHHHHHHhhhhhhccc
Q 017200 302 AGVDVMT--FGQYMRPSKRHMPVSEYITPEAFERYRALGMEMGFRYVASG 349 (375)
Q Consensus 302 lgvd~v~--i~qYl~P~~~~~~v~~~v~pe~~~~l~~~a~~~gf~~~~sg 349 (375)
.|+|.+. +|+.. +..+..| .+ .++.|+++....+.-.++=|
T Consensus 165 tgvD~Lavs~Gt~h-g~~~~~~---~l---~~e~L~~i~~~~~iPlv~hG 207 (282)
T TIGR01859 165 TGVDYLAAAIGTSH-GKYKGEP---GL---DFERLKEIKELTNIPLVLHG 207 (282)
T ss_pred HCcCEEeeccCccc-cccCCCC---cc---CHHHHHHHHHHhCCCEEEEC
Confidence 8999988 44321 1111111 11 26667776666655444444
No 214
>cd07947 DRE_TIM_Re_CS Clostridium kluyveri Re-citrate synthase and related proteins, catalytic TIM barrel domain. Re-citrate synthase (Re-CS) is a Clostridium kluyveri enzyme that converts acetyl-CoA and oxaloacetate to citrate. In most organisms, this reaction is catalyzed by Si-citrate synthase which is Si-face stereospecific with respect to C-2 of oxaloacetate, and phylogenetically unrelated to Re-citrate synthase. Re-citrate synthase is also found in a few other strictly anaerobic organisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with
Probab=91.68 E-value=1.7 Score=42.58 Aligned_cols=131 Identities=11% Similarity=0.152 Sum_probs=79.0
Q ss_pred CCcchHHHHHHHHHhcC-----CcEEEEEeeeCCCCCcccHHHHHHHHHHHHHh--CCCcEEEeecCCCCCChHHHHHHH
Q 017200 157 PDPDEPTNVAEAIASWG-----LDYVVITSVDRDDLADQGSGHFAQTVRKLKEL--KPNMLIEALVPDFRGNNGCVREVA 229 (375)
Q Consensus 157 ld~eEi~~~a~al~~~G-----~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~--~p~i~Ie~l~pd~~g~~e~l~~L~ 229 (375)
.+.++-++.++.+.+.| +++|-+++-.. ..+.++.+.++.. .|. |..+ ...+.+-++...
T Consensus 18 ~~~~~Kv~i~~~L~~~G~~~~~v~~IE~~s~~~--------~d~~~v~~~~~~~~~~~~--v~~~---~r~~~~die~A~ 84 (279)
T cd07947 18 YTVEQIVKIYDYLHELGGGSGVIRQTEFFLYTE--------KDREAVEACLDRGYKFPE--VTGW---IRANKEDLKLVK 84 (279)
T ss_pred CCHHHHHHHHHHHHHcCCCCCccceEEecCcCh--------HHHHHHHHHHHcCCCCCE--EEEE---ecCCHHHHHHHH
Confidence 47889999999999999 99998754311 2233333333321 233 3322 222667789999
Q ss_pred HcCcccccccccchH-HHHHHhcCCCCCHHHHHH----HHHHHHHhCCCCceEEEeEEEecCCCHHH--------HHHHH
Q 017200 230 KSGLNVFAHNIETVE-ELQSAVRDHRANFKQSLD----VLMMAKDYVPAGTLTKTSIMLGCGETPDQ--------VVSTM 296 (375)
Q Consensus 230 ~aGldv~~hnlEtv~-rl~~~mr~r~~s~~~~l~----vl~~ak~~~p~Gl~tkt~imvGlGET~ee--------~~etl 296 (375)
++|++.+...+-+++ -.+..++ .+.++.++ +++.+++ .|+.+..++ = |.+..+ +.+.+
T Consensus 85 ~~g~~~v~i~~s~S~~~~~~~~~---~t~~e~l~~~~~~v~~a~~---~g~~v~~~~-e--d~~r~d~~~~v~~~~~~~~ 155 (279)
T cd07947 85 EMGLKETGILMSVSDYHIFKKLK---MTREEAMEKYLEIVEEALD---HGIKPRCHL-E--DITRADIYGFVLPFVNKLM 155 (279)
T ss_pred HcCcCEEEEEEcCCHHHHHHHhC---cCHHHHHHHHHHHHHHHHH---CCCeEEEEE-E--cccCCCcccchHHHHHHHH
Confidence 999999888887777 4445554 34555555 5555665 466555444 1 444442 22333
Q ss_pred HHHHHcCCc-EEee
Q 017200 297 EKVRAAGVD-VMTF 309 (375)
Q Consensus 297 ~~Lrelgvd-~v~i 309 (375)
+...+.|++ .|.+
T Consensus 156 ~~~~~~G~~~~i~l 169 (279)
T cd07947 156 KLSKESGIPVKIRL 169 (279)
T ss_pred HHHHHCCCCEEEEe
Confidence 444458998 6766
No 215
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=91.56 E-value=5.5 Score=37.44 Aligned_cols=112 Identities=17% Similarity=0.201 Sum_probs=80.4
Q ss_pred CCcchHHHHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhC---CCcEEEeecCCCCCChHHHHHHHHcCc
Q 017200 157 PDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELK---PNMLIEALVPDFRGNNGCVREVAKSGL 233 (375)
Q Consensus 157 ld~eEi~~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~---p~i~Ie~l~pd~~g~~e~l~~L~~aGl 233 (375)
.+.++.+..++++.+.|++-+=+|--. ++ -.+.|+.|++.+ |++.|.+=+ .. +.+.++...++|.
T Consensus 22 ~~~~~a~~~~~al~~~Gi~~iEit~~~----~~-----a~~~i~~l~~~~~~~p~~~vGaGT--V~-~~~~~~~a~~aGA 89 (213)
T PRK06552 22 ESKEEALKISLAVIKGGIKAIEVTYTN----PF-----ASEVIKELVELYKDDPEVLIGAGT--VL-DAVTARLAILAGA 89 (213)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEECCC----cc-----HHHHHHHHHHHcCCCCCeEEeeee--CC-CHHHHHHHHHcCC
Confidence 478999999999999999988887421 21 357888898887 456665422 11 7889999999998
Q ss_pred ccccccccchHHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcCCcEEeee
Q 017200 234 NVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFG 310 (375)
Q Consensus 234 dv~~hnlEtv~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~tkt~imvGlGET~ee~~etl~~Lrelgvd~v~i~ 310 (375)
+.+ |. +..+ -++++.+++ .|+..-.+. .|..|+.+.+ +.|.|++.+|
T Consensus 90 ~Fi-------------vs-P~~~----~~v~~~~~~---~~i~~iPG~-----~T~~E~~~A~----~~Gad~vklF 136 (213)
T PRK06552 90 QFI-------------VS-PSFN----RETAKICNL---YQIPYLPGC-----MTVTEIVTAL----EAGSEIVKLF 136 (213)
T ss_pred CEE-------------EC-CCCC----HHHHHHHHH---cCCCEECCc-----CCHHHHHHHH----HcCCCEEEEC
Confidence 865 33 2333 267777777 456655555 4888887775 5899999985
No 216
>TIGR00970 leuA_yeast 2-isopropylmalate synthase, yeast type. A larger family of homologous proteins includes homocitrate synthase, distinct lineages of 2-isopropylmalate synthase, several distinct, uncharacterized, orthologous sets in the Archaea, and other related enzymes. This model describes a family of 2-isopropylmalate synthases as found in yeasts and in a minority of studied bacteria.
Probab=91.45 E-value=6.4 Score=42.34 Aligned_cols=140 Identities=11% Similarity=0.067 Sum_probs=85.9
Q ss_pred CCCcchHHHHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHh---CCCcEEEeecCCCCCC-hHHHHHHHHc
Q 017200 156 PPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKEL---KPNMLIEALVPDFRGN-NGCVREVAKS 231 (375)
Q Consensus 156 ~ld~eEi~~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~---~p~i~Ie~l~pd~~g~-~e~l~~L~~a 231 (375)
+++.++=++.++.|.+.|+++|-+.-..-. ... .+.++.+.+. .+++.+.++.+...++ +..++.+..+
T Consensus 44 ~~s~e~Ki~ia~~L~~~Gvd~IE~Gfp~~s------~~D-~e~v~~i~~~~l~~~~~~i~al~~~~~~did~a~~a~~~~ 116 (564)
T TIGR00970 44 PMSPARKRRYFDLLVRIGFKEIEVGFPSAS------QTD-FDFVREIIEQGAIPDDVTIQVLTQSREELIERTFEALSGA 116 (564)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEeCCCCC------HHH-HHHHHHHHHhcCCCCCcEEEEEcCCchhhHHHHHHHhcCC
Confidence 589999999999999999999987632211 112 2334444333 1357888888876432 2334444455
Q ss_pred CcccccccccchH-HHHHHhcCCCCCHHHHHHHHHH----HHHhCCCC-ceEEEeEEEec-CC----CH-HHHHHHHHHH
Q 017200 232 GLNVFAHNIETVE-ELQSAVRDHRANFKQSLDVLMM----AKDYVPAG-TLTKTSIMLGC-GE----TP-DQVVSTMEKV 299 (375)
Q Consensus 232 Gldv~~hnlEtv~-rl~~~mr~r~~s~~~~l~vl~~----ak~~~p~G-l~tkt~imvGl-GE----T~-ee~~etl~~L 299 (375)
+.+.+...+-+++ -+...++ .+.++.++.+.. +++....+ ..+.+.+.+=| +| ++ +.+++.++.+
T Consensus 117 ~~~~v~i~~~~Sd~h~~~~l~---~s~ee~l~~~~~~v~~ak~~~~~~~~~~~~~~~v~f~~Ed~~r~d~~~l~~~~~~a 193 (564)
T TIGR00970 117 KRATVHFYNATSILFREVVFR---ASRAEVQAIATDGTKLVRKCTKQAAKYPGTQWRFEYSPESFSDTELEFAKEVCEAV 193 (564)
T ss_pred CCCEEEEEEcCCHHHHHHHhC---CCHHHHHHHHHHHHHHHHHhcccccccccceEEEEEecccCCCCCHHHHHHHHHHH
Confidence 5456777777777 3334443 467777665544 55532111 12345556667 78 54 6667888999
Q ss_pred HHcCCc
Q 017200 300 RAAGVD 305 (375)
Q Consensus 300 relgvd 305 (375)
.++|.+
T Consensus 194 ~~ag~~ 199 (564)
T TIGR00970 194 KEVWAP 199 (564)
T ss_pred HHhCCC
Confidence 999863
No 217
>PRK14057 epimerase; Provisional
Probab=91.42 E-value=4 Score=39.57 Aligned_cols=125 Identities=11% Similarity=0.034 Sum_probs=78.4
Q ss_pred CCcchHHHHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCCCcEEEeecCCCCCChHHHHHHHHcCcccc
Q 017200 157 PDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVF 236 (375)
Q Consensus 157 ld~eEi~~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGldv~ 236 (375)
.|+..+.+.++.+.+.|++.+++==-|..-.|.-.+ =.++++.|++..| +.+++.+-+ ....++.+.++|+|.+
T Consensus 29 aD~~~L~~el~~l~~~g~d~lHiDVMDG~FVPNitf--Gp~~i~~i~~~~p-~DvHLMV~~---P~~~i~~~~~aGad~I 102 (254)
T PRK14057 29 GQWIALHRYLQQLEALNQPLLHLDLMDGQFCPQFTV--GPWAVGQLPQTFI-KDVHLMVAD---QWTAAQACVKAGAHCI 102 (254)
T ss_pred cCHHHHHHHHHHHHHCCCCEEEEeccCCccCCcccc--CHHHHHHhccCCC-eeEEeeeCC---HHHHHHHHHHhCCCEE
Confidence 566788899999999999999876555433343111 1356677765444 455555432 2457899999999999
Q ss_pred cccccchHHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCce-------EEEeEEEecCCCHHHHHHHHHHHHHcCCcEEee
Q 017200 237 AHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTL-------TKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTF 309 (375)
Q Consensus 237 ~hnlEtv~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~-------tkt~imvGlGET~ee~~etl~~Lrelgvd~v~i 309 (375)
....|+.+. -.++++.+|+ .|++ .++++-+.-+=..+.+...+. .+|.|.+
T Consensus 103 t~H~Ea~~~--------------~~~~l~~Ir~---~G~k~~~~~~~~kaGlAlnP~Tp~e~i~~~l~-----~vD~VLv 160 (254)
T PRK14057 103 TLQAEGDIH--------------LHHTLSWLGQ---QTVPVIGGEMPVIRGISLCPATPLDVIIPILS-----DVEVIQL 160 (254)
T ss_pred EEeeccccC--------------HHHHHHHHHH---cCCCcccccccceeEEEECCCCCHHHHHHHHH-----hCCEEEE
Confidence 988885421 1345555565 3432 467777777755555544443 3565544
No 218
>cd07942 DRE_TIM_LeuA Mycobacterium tuberculosis LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Alpha-isopropylmalate synthase (LeuA), a key enzyme in leucine biosynthesis, catalyzes the first committed step in the pathway, converting acetyl-CoA and alpha-ketoisovalerate to alpha-isopropyl malate and CoA. Although the reaction catalyzed by LeuA is similar to that of the Arabidopsis thaliana IPMS1 protein, the two fall into phylogenetically distinct families within the same superfamily. LeuA has and N-terminal TIM barrel catalytic domain, a helical linker domain, and a C-terminal regulatory domain. LeuA forms a homodimer in which the linker domain of one monomer sits over the catalytic domain of the other, inserting residues into the active site that may be important for catalysis. Homologs of LeuA are found in bacteria as well as fungi. This family includes alpha-isopropylmalate synthases I (LEU4) and II (LEU9) from Saccharomyces cerevisiae. This family belong
Probab=91.25 E-value=7.6 Score=38.11 Aligned_cols=138 Identities=12% Similarity=0.140 Sum_probs=85.9
Q ss_pred CCCcchHHHHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHh---CCCcEEEeecCCCCCChHHHHHHHHc-
Q 017200 156 PPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKEL---KPNMLIEALVPDFRGNNGCVREVAKS- 231 (375)
Q Consensus 156 ~ld~eEi~~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~---~p~i~Ie~l~pd~~g~~e~l~~L~~a- 231 (375)
.++.++-++.++.+.+.|+++|-++- |...+ . =.+.++.|.+. .+...+.++.+... +.++...++
T Consensus 19 ~~s~~~Ki~ia~~L~~~Gv~~IE~gf---P~~~~--~--e~e~~~~i~~~~~~~~~~~~~al~r~~~---~die~a~~~~ 88 (284)
T cd07942 19 PMSVEQKLRFFKLLVKIGFKEIEVGF---PSASQ--T--DFDFVRELIEEDLIPDDVTIQVLTQARE---DLIERTFEAL 88 (284)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEeC---CCCCH--H--HHHHHHHHHHccCCCCCCEEEEEcCCCh---hhHHHHHHHh
Confidence 48999999999999999999998762 44433 1 23567777443 23577778887653 335666665
Q ss_pred -Ccc--cccccccchH-HHHHHhcCCCCCHHHHHH----HHHHHHHhCCCCce-EEEeEEEec-C----CCH-HHHHHHH
Q 017200 232 -GLN--VFAHNIETVE-ELQSAVRDHRANFKQSLD----VLMMAKDYVPAGTL-TKTSIMLGC-G----ETP-DQVVSTM 296 (375)
Q Consensus 232 -Gld--v~~hnlEtv~-rl~~~mr~r~~s~~~~l~----vl~~ak~~~p~Gl~-tkt~imvGl-G----ET~-ee~~etl 296 (375)
|++ .+...+-+++ -+..+++ .+.++.++ .++.+++. |+. +.+++-+-+ | .++ +.+.+.+
T Consensus 89 ~~~~~~~v~i~~~~Sd~h~~~~~~---~s~~e~~~~~~~~v~~a~~~---g~~~~~~~~~~~~~~EDasr~~~~~l~~~~ 162 (284)
T cd07942 89 RGAKKAIVHLYNATSPLQRRVVFG---KSKEEIIEIAVDGAKLVKEL---AAKYPETDWRFEYSPESFSDTELDFALEVC 162 (284)
T ss_pred CCCCCCEEEEEEcCCHHHHHHHhC---CCHHHHHHHHHHHHHHHHHh---cccccCceEEEEECCccCCCCCHHHHHHHH
Confidence 554 4655566677 4444554 34566655 55556663 432 234555655 5 454 5566777
Q ss_pred HHHHHc---CCc---EEee
Q 017200 297 EKVRAA---GVD---VMTF 309 (375)
Q Consensus 297 ~~Lrel---gvd---~v~i 309 (375)
+.+.+. +++ .|.+
T Consensus 163 ~~~~~~~~~g~~~~~~i~l 181 (284)
T cd07942 163 EAVIDVWQPTPENKIILNL 181 (284)
T ss_pred HHHHHhhcCCCCcceEEEc
Confidence 777776 444 5555
No 219
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=91.15 E-value=5.2 Score=42.30 Aligned_cols=129 Identities=22% Similarity=0.296 Sum_probs=82.2
Q ss_pred hHHHHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCCCcEEEeecCCCCCChHHHHHHHHcCccccccc-
Q 017200 161 EPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHN- 239 (375)
Q Consensus 161 Ei~~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGldv~~hn- 239 (375)
+.++.++++.+.|++.|+|+.-+.. .....+.|+.|++.+|++.|-+ ++.. +.+..+.+.++|+|.+-.+
T Consensus 241 ~~~~~~~~l~~ag~d~i~id~a~G~------s~~~~~~i~~ik~~~~~~~v~a--G~V~-t~~~a~~~~~aGad~I~vg~ 311 (495)
T PTZ00314 241 EDIERAAALIEAGVDVLVVDSSQGN------SIYQIDMIKKLKSNYPHVDIIA--GNVV-TADQAKNLIDAGADGLRIGM 311 (495)
T ss_pred HHHHHHHHHHHCCCCEEEEecCCCC------chHHHHHHHHHHhhCCCceEEE--CCcC-CHHHHHHHHHcCCCEEEECC
Confidence 3478899999999999999875322 2234789999999888765543 3332 6789999999999988433
Q ss_pred ----ccchHHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEE--ecCCCHHHHHHHHHHHHHcCCcEEeeecCC
Q 017200 240 ----IETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIML--GCGETPDQVVSTMEKVRAAGVDVMTFGQYM 313 (375)
Q Consensus 240 ----lEtv~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~tkt~imv--GlGET~ee~~etl~~Lrelgvd~v~i~qYl 313 (375)
+.+...+. -+. .....-..++.+.+++ .|++ +|. |. -|..|+...+ .+|.+.|-+|..+
T Consensus 312 g~Gs~~~t~~~~-~~g--~p~~~ai~~~~~~~~~---~~v~----vIadGGi-~~~~di~kAl----a~GA~~Vm~G~~~ 376 (495)
T PTZ00314 312 GSGSICITQEVC-AVG--RPQASAVYHVARYARE---RGVP----CIADGGI-KNSGDICKAL----ALGADCVMLGSLL 376 (495)
T ss_pred cCCcccccchhc-cCC--CChHHHHHHHHHHHhh---cCCe----EEecCCC-CCHHHHHHHH----HcCCCEEEECchh
Confidence 22211111 111 1123333445555555 2443 333 22 5788887776 4888988888665
No 220
>PLN02321 2-isopropylmalate synthase
Probab=91.09 E-value=6.6 Score=42.84 Aligned_cols=140 Identities=15% Similarity=0.169 Sum_probs=80.0
Q ss_pred CCCcchHHHHHHHHHhcCCcEEEEEee-eCCCCCcccHHHHHHHHHHHHHhC-CCc----EEEeecCCCCCChHHHHHHH
Q 017200 156 PPDPDEPTNVAEAIASWGLDYVVITSV-DRDDLADQGSGHFAQTVRKLKELK-PNM----LIEALVPDFRGNNGCVREVA 229 (375)
Q Consensus 156 ~ld~eEi~~~a~al~~~G~~eIvLTsg-dr~dl~d~G~~~~~~lir~Ik~~~-p~i----~Ie~l~pd~~g~~e~l~~L~ 229 (375)
.++.+|-++.++.+.+.|+++|-+..- -.++ | ++ .++.|.+.. +.+ .+..+..--+.+.+.++...
T Consensus 104 ~~s~eeKl~Ia~~L~~lGVd~IEvGfP~~Sp~--D--~e----~vr~i~~~~~~~v~~~~~v~~i~a~~ra~~~dId~A~ 175 (632)
T PLN02321 104 TLTSKEKLDIARQLAKLGVDIIEAGFPIASPD--D--LE----AVKTIAKEVGNEVDEDGYVPVICGLSRCNKKDIDAAW 175 (632)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEeCcCCCcc--H--HH----HHHHHHHhcccCCCccccceeeeeehhccHHhHHHHH
Confidence 489999999999999999999988652 2221 2 22 245554331 111 11111111122456667666
Q ss_pred HcCcc----cccccccchH-HHHHHhcCCCCCHHHHHHHH----HHHHHhCCCCce-EEEeEEEecCCCHHHHHHHHHHH
Q 017200 230 KSGLN----VFAHNIETVE-ELQSAVRDHRANFKQSLDVL----MMAKDYVPAGTL-TKTSIMLGCGETPDQVVSTMEKV 299 (375)
Q Consensus 230 ~aGld----v~~hnlEtv~-rl~~~mr~r~~s~~~~l~vl----~~ak~~~p~Gl~-tkt~imvGlGET~ee~~etl~~L 299 (375)
+++.+ .+...+-+++ .+...++ .+.++.++.+ +.+++ .|.. +.-+..-+.--..+.+++.++.+
T Consensus 176 ~al~~a~~~~I~i~~stSd~h~~~~l~---~t~ee~l~~~~~~V~~Ak~---~G~~~v~fs~EDa~rtd~d~l~~~~~~a 249 (632)
T PLN02321 176 EAVKHAKRPRIHTFIATSEIHMEHKLR---KTPDEVVEIARDMVKYARS---LGCEDVEFSPEDAGRSDPEFLYRILGEV 249 (632)
T ss_pred HHhcCCCCCEEEEEEcCCHHHHHHHhC---CCHHHHHHHHHHHHHHHHH---cCCceEEEecccCCCCCHHHHHHHHHHH
Confidence 66332 3444455666 3444443 4677776644 45555 3432 22222222223456666888999
Q ss_pred HHcCCcEEee
Q 017200 300 RAAGVDVMTF 309 (375)
Q Consensus 300 relgvd~v~i 309 (375)
.+.|++.|.+
T Consensus 250 ~~aGa~~I~L 259 (632)
T PLN02321 250 IKAGATTLNI 259 (632)
T ss_pred HHcCCCEEEe
Confidence 9999999887
No 221
>TIGR02146 LysS_fung_arch homocitrate synthase. This model includes the yeast LYS21 gene which carries out the first step of the alpha-aminoadipate (AAA) lysine biosynthesis pathway. A related pathway is found in Thermus thermophilus. This enzyme is closely related to 2-isopropylmalate synthase (LeuA) and citramalate synthase (CimA), both of which are present in the euryarchaeota. Some archaea have a separate homocitrate synthase (AksA) which also synthesizes longer homocitrate analogs.
Probab=90.92 E-value=13 Score=36.48 Aligned_cols=142 Identities=16% Similarity=0.171 Sum_probs=90.3
Q ss_pred CCCcchHHHHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCCCcEEEeecCCCCCChHHHHHHHHcCccc
Q 017200 156 PPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNV 235 (375)
Q Consensus 156 ~ld~eEi~~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGldv 235 (375)
.++.++.++.++.+.+.|+++|-+++.... ++ ..+..+.+........+-.+.+. ..+.++...+.|++.
T Consensus 16 ~~~~~~ki~i~~~l~~~Gv~~iE~g~p~~~--~~-----~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~a~~~~~~~ 85 (344)
T TIGR02146 16 NFSTEQKIEIAKALDEFGIDYIEVTHPAAS--KQ-----SRIDIEIIASLGLKANIVTHIRC---RLDDAKVAVELGVDG 85 (344)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEeCCCCC--HH-----HHHHHHHHHhcCCCcEEEEECCC---CHHHHHHHHHCCcCE
Confidence 377889999999999999999998874311 11 12233333322212233334432 356678888888887
Q ss_pred ccccccchH-HHHHHhc-CCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcCCcEEeee
Q 017200 236 FAHNIETVE-ELQSAVR-DHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFG 310 (375)
Q Consensus 236 ~~hnlEtv~-rl~~~mr-~r~~s~~~~l~vl~~ak~~~p~Gl~tkt~imvGlGET~ee~~etl~~Lrelgvd~v~i~ 310 (375)
+....-..+ .....+. ......+.....++.+++ .|+.+..+++-.+-...+++++..+.+.+++++.+.+.
T Consensus 86 ~~~~~~~s~~~~~~~~~~~~~~~~~~v~~~~e~a~~---~g~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~~~i~~~ 159 (344)
T TIGR02146 86 IDIFFGTSKLLRIAEHRSDAKSILESARETIEYAKS---AGLEVRFSAEDTFRSELADLLSIYETVGVFGVDRVGIA 159 (344)
T ss_pred EEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHH---CCCeEEEEEeeCCCCCHHHHHHHHHHHHHCCCCEEEEc
Confidence 655433322 2233322 112223455567788887 46778888887777778999999999999999987663
No 222
>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage. Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to
Probab=90.80 E-value=2.1 Score=40.96 Aligned_cols=184 Identities=19% Similarity=0.254 Sum_probs=103.2
Q ss_pred HHHHHhcCCcEEEEEeee---CCCCCccc---HHHHHHHHHHHHHhCCCcEEEeecCCC---CCC----hHHHHHHHHcC
Q 017200 166 AEAIASWGLDYVVITSVD---RDDLADQG---SGHFAQTVRKLKELKPNMLIEALVPDF---RGN----NGCVREVAKSG 232 (375)
Q Consensus 166 a~al~~~G~~eIvLTsgd---r~dl~d~G---~~~~~~lir~Ik~~~p~i~Ie~l~pd~---~g~----~e~l~~L~~aG 232 (375)
|+.+.+.|++-+.++|-- ---++|.+ .+.+...++.|.... .+. ++.|. .|+ .+.++.+.++|
T Consensus 22 A~~~e~~G~~ai~~s~~~~~~s~G~pD~~~~~~~e~~~~~~~I~~~~---~~P-v~~D~~~G~g~~~~~~~~v~~~~~~G 97 (243)
T cd00377 22 ARLAERAGFKAIYTSGAGVAASLGLPDGGLLTLDEVLAAVRRIARAV---DLP-VIADADTGYGNALNVARTVRELEEAG 97 (243)
T ss_pred HHHHHHcCCCEEEeccHHHHHhcCCCCCCcCCHHHHHHHHHHHHhhc---cCC-EEEEcCCCCCCHHHHHHHHHHHHHcC
Confidence 566677799877776642 11445544 344555555554432 222 11121 123 34467778888
Q ss_pred cccccccccchHHHHHHhcC-----CCCCHHHHHHHHHHHHHhCCCCceEEEeEEEe-----cC-CCHHHHHHHHHHHHH
Q 017200 233 LNVFAHNIETVEELQSAVRD-----HRANFKQSLDVLMMAKDYVPAGTLTKTSIMLG-----CG-ETPDQVVSTMEKVRA 301 (375)
Q Consensus 233 ldv~~hnlEtv~rl~~~mr~-----r~~s~~~~l~vl~~ak~~~p~Gl~tkt~imvG-----lG-ET~ee~~etl~~Lre 301 (375)
++.+.. |- ..+++-+. .-.+.+++.+.++.+++.... + ...-|+.+ .| +..+|.++-.+...+
T Consensus 98 ~~gv~i--ED--~~~~k~~g~~~~~~~~~~ee~~~ki~aa~~a~~~-~-~~~~IiARTDa~~~~~~~~~eai~Ra~ay~~ 171 (243)
T cd00377 98 AAGIHI--ED--QVGPKKCGHHGGKVLVPIEEFVAKIKAARDARDD-L-PDFVIIARTDALLAGEEGLDEAIERAKAYAE 171 (243)
T ss_pred CEEEEE--ec--CCCCccccCCCCCeecCHHHHHHHHHHHHHHHhc-c-CCeEEEEEcCchhccCCCHHHHHHHHHHHHH
Confidence 776543 31 11111110 124788888888888886533 3 34555555 55 689999999999999
Q ss_pred cCCcEEeeecCCCC-------CCCCCCccccCCHH----HHHHHHHHHHHhhhhhhccch-hhhhhcchhHHHH
Q 017200 302 AGVDVMTFGQYMRP-------SKRHMPVSEYITPE----AFERYRALGMEMGFRYVASGP-MVRSSYKVVGWCY 363 (375)
Q Consensus 302 lgvd~v~i~qYl~P-------~~~~~~v~~~v~pe----~~~~l~~~a~~~gf~~~~sgp-~vrssy~a~~~~~ 363 (375)
.|.|.+-+-....+ .....|+.=+..|. ..++| .++||..+.-|+ +.|+.++|-+.++
T Consensus 172 AGAD~v~v~~~~~~~~~~~~~~~~~~Pl~~~~~~~~~~~~~~~l----~~lG~~~v~~~~~~~~~a~~a~~~~~ 241 (243)
T cd00377 172 AGADGIFVEGLKDPEEIRAFAEAPDVPLNVNMTPGGNLLTVAEL----AELGVRRVSYGLALLRAAAKAMREAA 241 (243)
T ss_pred cCCCEEEeCCCCCHHHHHHHHhcCCCCEEEEecCCCCCCCHHHH----HHCCCeEEEEChHHHHHHHHHHHHHH
Confidence 99998766311111 00123332222221 13333 356998887776 7888888765544
No 223
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=90.71 E-value=8.1 Score=36.73 Aligned_cols=131 Identities=15% Similarity=0.164 Sum_probs=76.8
Q ss_pred cchHHHHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCCCcEEEeecCCCCCChHHHHHHHHcCcccccc
Q 017200 159 PDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAH 238 (375)
Q Consensus 159 ~eEi~~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGldv~~h 238 (375)
..++.+.|+.+.+.|+++++++.-+++.- . ...-.++++.|++.. ++.|.+ .+... +.+.++.+.++|++.+-.
T Consensus 29 ~~d~~~~a~~~~~~G~~~i~i~dl~~~~~-~--~~~~~~~i~~i~~~~-~ipv~~-~GGi~-s~~~~~~~l~~Ga~~Vii 102 (253)
T PRK02083 29 AGDPVELAKRYNEEGADELVFLDITASSE-G--RDTMLDVVERVAEQV-FIPLTV-GGGIR-SVEDARRLLRAGADKVSI 102 (253)
T ss_pred cCCHHHHHHHHHHcCCCEEEEEeCCcccc-c--CcchHHHHHHHHHhC-CCCEEe-eCCCC-CHHHHHHHHHcCCCEEEE
Confidence 45788889999999999999998876421 1 133577888887754 233332 22332 688899998999887755
Q ss_pred cccchHHHHHHhcCCCCCHHHHHHHHHHHHHhCC-CCceEEEeEE-----------E--ecCCCHHHHHHHHHHHHHcCC
Q 017200 239 NIETVEELQSAVRDHRANFKQSLDVLMMAKDYVP-AGTLTKTSIM-----------L--GCGETPDQVVSTMEKVRAAGV 304 (375)
Q Consensus 239 nlEtv~rl~~~mr~r~~s~~~~l~vl~~ak~~~p-~Gl~tkt~im-----------v--GlGET~ee~~etl~~Lrelgv 304 (375)
+-+.. .. .+.++.+.+.++ ..+.+..++. . |.-.+..+..+..+.+.+.|+
T Consensus 103 gt~~l-------~~--------p~~~~ei~~~~g~~~iv~slD~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~ 167 (253)
T PRK02083 103 NSAAV-------AN--------PELISEAADRFGSQCIVVAIDAKRDPEPGRWEVYTHGGRKPTGLDAVEWAKEVEELGA 167 (253)
T ss_pred ChhHh-------hC--------cHHHHHHHHHcCCCCEEEEEEeccCCCCCCEEEEEcCCceecCCCHHHHHHHHHHcCC
Confidence 42111 10 123333333332 1133333321 1 111234456677778888999
Q ss_pred cEEeee
Q 017200 305 DVMTFG 310 (375)
Q Consensus 305 d~v~i~ 310 (375)
+.+.+.
T Consensus 168 ~~ii~~ 173 (253)
T PRK02083 168 GEILLT 173 (253)
T ss_pred CEEEEc
Confidence 988774
No 224
>PLN02446 (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
Probab=90.61 E-value=4.1 Score=39.60 Aligned_cols=165 Identities=15% Similarity=0.002 Sum_probs=93.4
Q ss_pred cchHHHHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCCCcEEEeecCCCCCChHHHHHHHHcCcccccc
Q 017200 159 PDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAH 238 (375)
Q Consensus 159 ~eEi~~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGldv~~h 238 (375)
.++|++.|+...+.|++.++|+ || |+|...-.++|++|.+ .+ +.|++ -+..+ . |.++.+.++|++.+-.
T Consensus 42 ~~dP~~~A~~~~~~Ga~~lHvV-----DL-dgg~~~n~~~i~~i~~-~~-~~vqv-GGGIR-~-e~i~~~l~~Ga~rVii 110 (262)
T PLN02446 42 DKSAAEFAEMYKRDGLTGGHVI-----ML-GADDASLAAALEALRA-YP-GGLQV-GGGVN-S-ENAMSYLDAGASHVIV 110 (262)
T ss_pred CCCHHHHHHHHHHCCCCEEEEE-----EC-CCCCcccHHHHHHHHh-CC-CCEEE-eCCcc-H-HHHHHHHHcCCCEEEE
Confidence 3689999999999999999988 33 2222222678888877 44 45542 23343 4 9999999999998866
Q ss_pred cccchHHHHHHhcCCCCCHHHHHHHHHHHHHhC-CCCceEEEeEE----------Eec-CCCHHHHHHHHHHHHHcCCcE
Q 017200 239 NIETVEELQSAVRDHRANFKQSLDVLMMAKDYV-PAGTLTKTSIM----------LGC-GETPDQVVSTMEKVRAAGVDV 306 (375)
Q Consensus 239 nlEtv~rl~~~mr~r~~s~~~~l~vl~~ak~~~-p~Gl~tkt~im----------vGl-GET~ee~~etl~~Lrelgvd~ 306 (375)
+=-. +.++.-+. +.++.+-+.+ |.-+.+.-+.- -|- -+|.-+..+.+..+.+.++..
T Consensus 111 gT~A-------v~~~~~~p----~~v~~~~~~~G~~~IvvsiD~k~~~g~~~Va~~GW~~~t~~~~~e~~~~~~~~g~~e 179 (262)
T PLN02446 111 TSYV-------FRDGQIDL----ERLKDLVRLVGKQRLVLDLSCRKKDGRYYVVTDRWQKFSDLAVDEETLEFLAAYCDE 179 (262)
T ss_pred chHH-------HhCCCCCH----HHHHHHHHHhCCCCEEEEEEEEecCCCEEEEECCCcccCCCCHHHHHHHHHHhCCCE
Confidence 5100 11001111 2333333322 22233322221 122 235667788778888888887
Q ss_pred EeeecCCCCCCCCCCccccCCHHHHHHHHHHHHHhhhhhhccchhhhh
Q 017200 307 MTFGQYMRPSKRHMPVSEYITPEAFERYRALGMEMGFRYVASGPMVRS 354 (375)
Q Consensus 307 v~i~qYl~P~~~~~~v~~~v~pe~~~~l~~~a~~~gf~~~~sgp~vrs 354 (375)
+-+..--+- ++. ..--++.+++++........+|| -|+|
T Consensus 180 ii~TdI~rD---Gtl-----~G~d~el~~~l~~~~~ipVIASG-Gv~s 218 (262)
T PLN02446 180 FLVHGVDVE---GKR-----LGIDEELVALLGEHSPIPVTYAG-GVRS 218 (262)
T ss_pred EEEEEEcCC---Ccc-----cCCCHHHHHHHHhhCCCCEEEEC-CCCC
Confidence 766422222 221 11125666666666666677777 4443
No 225
>COG1856 Uncharacterized homolog of biotin synthetase [Function unknown]
Probab=90.24 E-value=4.4 Score=38.74 Aligned_cols=110 Identities=19% Similarity=0.202 Sum_probs=71.0
Q ss_pred HHHHHHHHHHHHhC----CCcEEEeecCCCCCChHHHHHHHHcCccccccc--ccchHHHHHHhcCCCCCHHHHHHHHHH
Q 017200 193 GHFAQTVRKLKELK----PNMLIEALVPDFRGNNGCVREVAKSGLNVFAHN--IETVEELQSAVRDHRANFKQSLDVLMM 266 (375)
Q Consensus 193 ~~~~~lir~Ik~~~----p~i~Ie~l~pd~~g~~e~l~~L~~aGldv~~hn--lEtv~rl~~~mr~r~~s~~~~l~vl~~ 266 (375)
+.|...++.|++.. |.+.|.+--+...++.+.++.|.+-.+|.+-.+ +-|.-.-+... +.-+.++.+++++.
T Consensus 136 ~dyl~~l~~L~e~~irvvpHitiGL~~gki~~e~kaIdiL~~~~~DalVl~vliPtpGtkm~~~--~pp~~eE~i~v~~~ 213 (275)
T COG1856 136 EDYLRSLLLLKENGIRVVPHITIGLDFGKIHGEFKAIDILVNYEPDALVLVVLIPTPGTKMGNS--PPPPVEEAIKVVKY 213 (275)
T ss_pred HHHHHHHHHHHHcCceeceeEEEEeccCcccchHHHHHHHhcCCCCeEEEEEEecCCchhccCC--CCcCHHHHHHHHHH
Confidence 34555566666543 444544433444446677888887777765333 33332112222 46789999999999
Q ss_pred HHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcCCcEEee
Q 017200 267 AKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTF 309 (375)
Q Consensus 267 ak~~~p~Gl~tkt~imvGlGET~ee~~etl~~Lrelgvd~v~i 309 (375)
||+.+|. .+.-+-|=-.||.. ++.=+.+..+|+|.|++
T Consensus 214 AR~~f~~--pv~iGCmrP~Ge~r---vk~d~~av~~gVd~It~ 251 (275)
T COG1856 214 ARKKFPN--PVSIGCMRPRGEWR---VKLDKEAVLAGVDRITF 251 (275)
T ss_pred HHHhCCC--CeeEeecCcCchhH---HHHHHHHHHcCCceeec
Confidence 9999986 56666666667654 45556677899999998
No 226
>COG0685 MetF 5,10-methylenetetrahydrofolate reductase [Amino acid transport and metabolism]
Probab=90.21 E-value=3.2 Score=40.84 Aligned_cols=99 Identities=12% Similarity=0.139 Sum_probs=63.5
Q ss_pred CCcchHHHHHHHHHhcCCcEEEEEeeeCC--CCCccc-HHHHHHHHHHHHHhCCC-cEEEe-ecCCCCCC----hHHHHH
Q 017200 157 PDPDEPTNVAEAIASWGLDYVVITSVDRD--DLADQG-SGHFAQTVRKLKELKPN-MLIEA-LVPDFRGN----NGCVRE 227 (375)
Q Consensus 157 ld~eEi~~~a~al~~~G~~eIvLTsgdr~--dl~d~G-~~~~~~lir~Ik~~~p~-i~Ie~-l~pd~~g~----~e~l~~ 227 (375)
.+..++...++.+.+.|++.|++..||-+ +.+. + ..+-.++|+.||....+ ..|.+ +.|+.... .+.+..
T Consensus 89 ~n~~~i~~~l~~~~~~Gi~~ilaLrGDpp~g~~~~-~~~~~s~dLv~lik~~~~~~f~i~~A~~Pe~h~~s~~~~~d~~~ 167 (291)
T COG0685 89 RNRIEIISILKGAAALGIRNILALRGDPPAGDKPG-GKDLYSVDLVELIKKMRGGIFDIGVAAYPEGHPESKDVKEDIKR 167 (291)
T ss_pred CCHHHHHHHHHHHHHhCCceEEEecCCCCCCCCCC-ccccCHHHHHHHHHHhcCCeEEEEEEeCCCCCccchhhHHHHHH
Confidence 46789999999999999999999999975 3332 2 34567888889877655 55553 56655322 223333
Q ss_pred HH---HcCcccccccccchHHHHHHhcCCCCCHHHHHHHHHHHHH
Q 017200 228 VA---KSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKD 269 (375)
Q Consensus 228 L~---~aGldv~~hnlEtv~rl~~~mr~r~~s~~~~l~vl~~ak~ 269 (375)
++ ++|.|.+ .-++ -++.+.+.+..+.++.
T Consensus 168 lkrKv~aGAd~~----------iTQ~---~fd~e~~~~~~~~~~~ 199 (291)
T COG0685 168 LKRKVDAGADFF----------ITQF---FFDVEAFERFAERVRA 199 (291)
T ss_pred HHHHHhcchHHH----------HHHH---ccCHHHHHHHHHHHHh
Confidence 33 4565533 2222 2456666666667666
No 227
>PRK02227 hypothetical protein; Provisional
Probab=89.56 E-value=14 Score=35.50 Aligned_cols=169 Identities=14% Similarity=0.148 Sum_probs=101.5
Q ss_pred HHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCCC-cEEEeecCCCCCCh----HHHHHHHHcCccccccc
Q 017200 165 VAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPN-MLIEALVPDFRGNN----GCVREVAKSGLNVFAHN 239 (375)
Q Consensus 165 ~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p~-i~Ie~l~pd~~g~~----e~l~~L~~aGldv~~hn 239 (375)
+|+...+.|.+-|-+==-.+.. .| ..+..+|++|++..+. ..|..-++|+...+ ..+..+..+|+|.+..+
T Consensus 12 EA~~Al~~GaDiIDvK~P~~Ga---LG-A~~p~vir~Iv~~~~~~~pvSAtiGD~p~~p~~~~~aa~~~a~~GvDyVKvG 87 (238)
T PRK02227 12 EALEALAGGADIIDVKNPKEGS---LG-ANFPWVIREIVAAVPGRKPVSATIGDVPYKPGTISLAALGAAATGADYVKVG 87 (238)
T ss_pred HHHHHHhcCCCEEEccCCCCCC---CC-CCCHHHHHHHHHHhCCCCCceeeccCCCCCchHHHHHHHHHHhhCCCEEEEc
Confidence 3445567788766332111111 13 2377889998887654 67788888874332 33556667899988776
Q ss_pred ccchHHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecCCCH----HHHHHHHHHHHHcCCcEEeeecCCCC
Q 017200 240 IETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETP----DQVVSTMEKVRAAGVDVMTFGQYMRP 315 (375)
Q Consensus 240 lEtv~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~tkt~imvGlGET~----ee~~etl~~Lrelgvd~v~i~qYl~P 315 (375)
+- ...++++.+++++..-+..+.--.-+.=+.+|+-+-. -.-.+.+..+.+.|++.+-+=.+.
T Consensus 88 l~-----------~~~~~~~~~~~~~~v~~a~~~~~~~~~vVav~yaD~~r~~~~~~~~l~~~a~~aGf~g~MlDTa~-- 154 (238)
T PRK02227 88 LY-----------GGKTAEEAVEVMKAVVRAVKDLDPGKIVVAAGYADAHRVGSVSPLSLPAIAADAGFDGAMLDTAI-- 154 (238)
T ss_pred CC-----------CCCcHHHHHHHHHHHHHhhhhcCCCCeEEEEEecccccccCCChHHHHHHHHHcCCCEEEEeccc--
Confidence 42 1234455555554432211110112344555664411 022356677788999988875442
Q ss_pred CCCCCCccccCCHHHHHHHHHHHHHhhhhhhccchh
Q 017200 316 SKRHMPVSEYITPEAFERYRALGMEMGFRYVASGPM 351 (375)
Q Consensus 316 ~~~~~~v~~~v~pe~~~~l~~~a~~~gf~~~~sgp~ 351 (375)
+.+..+.+.+..++...+-+.+++.|......|.|
T Consensus 155 -Kdg~~Lfd~l~~~~L~~Fv~~ar~~Gl~~gLAGSL 189 (238)
T PRK02227 155 -KDGKSLFDHMDEEELAEFVAEARSHGLMSALAGSL 189 (238)
T ss_pred -CCCcchHhhCCHHHHHHHHHHHHHcccHhHhcccC
Confidence 44555667788999999999999999988877743
No 228
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=89.29 E-value=6.8 Score=36.47 Aligned_cols=131 Identities=14% Similarity=0.134 Sum_probs=75.3
Q ss_pred chHHHHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCCCcEEEeecCCCCCChHHHHHHHHcCccccccc
Q 017200 160 DEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHN 239 (375)
Q Consensus 160 eEi~~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGldv~~hn 239 (375)
.+|++.|+.+.+.|++++++. |.+....+ ...-.++++.+.+..+ +. +.......+.+.++.+.++|.|.+-.+
T Consensus 28 ~dp~~~a~~~~~~g~~~l~v~--dl~~~~~g-~~~~~~~i~~i~~~~~-~p--i~~ggGI~~~ed~~~~~~~Ga~~vvlg 101 (230)
T TIGR00007 28 DDPVEAAKKWEEEGAERIHVV--DLDGAKEG-GPVNLPVIKKIVRETG-VP--VQVGGGIRSLEDVEKLLDLGVDRVIIG 101 (230)
T ss_pred CCHHHHHHHHHHcCCCEEEEE--eCCccccC-CCCcHHHHHHHHHhcC-CC--EEEeCCcCCHHHHHHHHHcCCCEEEEC
Confidence 478889999999999999994 44433221 2223567777776542 22 333445557899999999999876433
Q ss_pred ccchHHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEE------EecCC-CHHHHHHHHHHHHHcCCcEEeee
Q 017200 240 IETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIM------LGCGE-TPDQVVSTMEKVRAAGVDVMTFG 310 (375)
Q Consensus 240 lEtv~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~tkt~im------vGlGE-T~ee~~etl~~Lrelgvd~v~i~ 310 (375)
-+..+ +.+...+..+... ..-+.+.-++- -|.-| +..+..+.++.+.+.|++.+.+.
T Consensus 102 s~~l~-----------d~~~~~~~~~~~g---~~~i~~sid~~~~~v~~~g~~~~~~~~~~~~~~~~~~~g~~~ii~~ 165 (230)
T TIGR00007 102 TAAVE-----------NPDLVKELLKEYG---PERIVVSLDARGGEVAVKGWLEKSEVSLEELAKRLEELGLEGIIYT 165 (230)
T ss_pred hHHhh-----------CHHHHHHHHHHhC---CCcEEEEEEEECCEEEEcCCcccCCCCHHHHHHHHHhCCCCEEEEE
Confidence 11111 1122223333321 11133333322 22211 23466778888899999987764
No 229
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=89.25 E-value=9.3 Score=34.87 Aligned_cols=119 Identities=15% Similarity=0.183 Sum_probs=70.1
Q ss_pred CCcchHHHHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCCCcEEE----eecCCCCCChHHHHHHHHcC
Q 017200 157 PDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIE----ALVPDFRGNNGCVREVAKSG 232 (375)
Q Consensus 157 ld~eEi~~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p~i~Ie----~l~pd~~g~~e~l~~L~~aG 232 (375)
.++++.++.++++ +-|++-|-++..... ..| .+.|+.|++.+|+..+- ++.|+ ...++.+.++|
T Consensus 9 ~~~~~a~~~~~~l-~~~v~~iev~~~l~~---~~g----~~~i~~l~~~~~~~~i~~d~k~~d~~----~~~~~~~~~~G 76 (206)
T TIGR03128 9 LDIEEALELAEKV-ADYVDIIEIGTPLIK---NEG----IEAVKEMKEAFPDRKVLADLKTMDAG----EYEAEQAFAAG 76 (206)
T ss_pred CCHHHHHHHHHHc-ccCeeEEEeCCHHHH---HhC----HHHHHHHHHHCCCCEEEEEEeeccch----HHHHHHHHHcC
Confidence 4678888999988 778776655322111 111 56788888887753332 22222 23589999999
Q ss_pred cccccccccchHHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEec-C-CCHHHHHHHHHHHHHcCCcEEeee
Q 017200 233 LNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGC-G-ETPDQVVSTMEKVRAAGVDVMTFG 310 (375)
Q Consensus 233 ldv~~hnlEtv~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~tkt~imvGl-G-ET~ee~~etl~~Lrelgvd~v~i~ 310 (375)
.|.+....++.+ ..-.++++.+++ .|+. +++++ + .| ..+.+..+.++++|++.++
T Consensus 77 ad~i~vh~~~~~-------------~~~~~~i~~~~~---~g~~----~~~~~~~~~t---~~~~~~~~~~~g~d~v~~~ 133 (206)
T TIGR03128 77 ADIVTVLGVADD-------------ATIKGAVKAAKK---HGKE----VQVDLINVKD---KVKRAKELKELGADYIGVH 133 (206)
T ss_pred CCEEEEeccCCH-------------HHHHHHHHHHHH---cCCE----EEEEecCCCC---hHHHHHHHHHcCCCEEEEc
Confidence 998865544321 222456777777 3543 33343 2 23 2233334466799999885
No 230
>PRK08005 epimerase; Validated
Probab=89.25 E-value=19 Score=33.77 Aligned_cols=116 Identities=13% Similarity=0.100 Sum_probs=74.6
Q ss_pred CCcchHHHHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCC-CcEEEeecCCCCCChHHHHHHHHcCccc
Q 017200 157 PDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKP-NMLIEALVPDFRGNNGCVREVAKSGLNV 235 (375)
Q Consensus 157 ld~eEi~~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p-~i~Ie~l~pd~~g~~e~l~~L~~aGldv 235 (375)
.|+..+.+.++++.+.|++.+++==-|..-.|...+. .++++.|++... .+.+++.+-+ ....++.+.++|+|.
T Consensus 10 ad~~~l~~el~~l~~~g~d~lHiDvMDG~FVPN~tfG--~~~i~~l~~~t~~~~DvHLMv~~---P~~~i~~~~~~gad~ 84 (210)
T PRK08005 10 ADPLRYAEALTALHDAPLGSLHLDIEDTSFINNITFG--MKTIQAVAQQTRHPLSFHLMVSS---PQRWLPWLAAIRPGW 84 (210)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEeccCCCcCCccccC--HHHHHHHHhcCCCCeEEEeccCC---HHHHHHHHHHhCCCE
Confidence 4566788899999999999998765554434432111 457777776431 1455555432 245789999999999
Q ss_pred ccccccchHHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHH
Q 017200 236 FAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTM 296 (375)
Q Consensus 236 ~~hnlEtv~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~tkt~imvGlGET~ee~~etl 296 (375)
+....|+.+. ..++++.+|+ .| .++++-+.-+-..+.+...+
T Consensus 85 It~H~Ea~~~--------------~~~~l~~Ik~---~G--~k~GlAlnP~Tp~~~i~~~l 126 (210)
T PRK08005 85 IFIHAESVQN--------------PSEILADIRA---IG--AKAGLALNPATPLLPYRYLA 126 (210)
T ss_pred EEEcccCccC--------------HHHHHHHHHH---cC--CcEEEEECCCCCHHHHHHHH
Confidence 9988885421 1246666777 45 46777777775555554443
No 231
>cd00739 DHPS DHPS subgroup of Pterin binding enzymes. DHPS (dihydropteroate synthase), a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS.
Probab=89.15 E-value=9.4 Score=36.83 Aligned_cols=77 Identities=18% Similarity=0.226 Sum_probs=49.3
Q ss_pred CCCcchHHHHHHHHHhcCCcEEEEEee-eCCCCCc----ccHHHHHHHHHHHHHhCCCcEEEeecCCCCCChHHHHHHHH
Q 017200 156 PPDPDEPTNVAEAIASWGLDYVVITSV-DRDDLAD----QGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAK 230 (375)
Q Consensus 156 ~ld~eEi~~~a~al~~~G~~eIvLTsg-dr~dl~d----~G~~~~~~lir~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~ 230 (375)
.++++++++.|+...+.|.+.|-|=+. .+++... ...+.+..+|+.|++.. ++.|. +-.+ +.+.++.-.+
T Consensus 20 ~~~~~~~~~~a~~~~~~GAdiIDIG~~st~p~~~~i~~~~E~~rl~~~v~~i~~~~-~~plS--IDT~--~~~v~e~al~ 94 (257)
T cd00739 20 FLSLDKAVAHAEKMIAEGADIIDIGGESTRPGADPVSVEEELERVIPVLEALRGEL-DVLIS--VDTF--RAEVARAALE 94 (257)
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEECCCcCCCCCCCCCHHHHHHHHHHHHHHHHhcC-CCcEE--EeCC--CHHHHHHHHH
Confidence 478999999999999999999988543 2333221 11345556677777643 23332 2122 5677777777
Q ss_pred cCccccc
Q 017200 231 SGLNVFA 237 (375)
Q Consensus 231 aGldv~~ 237 (375)
.|.+.++
T Consensus 95 ~G~~iIN 101 (257)
T cd00739 95 AGADIIN 101 (257)
T ss_pred hCCCEEE
Confidence 7877765
No 232
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=89.09 E-value=6.2 Score=41.12 Aligned_cols=130 Identities=22% Similarity=0.296 Sum_probs=81.8
Q ss_pred chHHHHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCCCcEEEeecCCCCCChHHHHHHHHcCccccccc
Q 017200 160 DEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHN 239 (375)
Q Consensus 160 eEi~~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGldv~~hn 239 (375)
++-.+.++++.+.|++-|+|..-++. .....+.|+.|++.+|++.|-+ ++.. +.+..+.+.++|+|.+..+
T Consensus 223 ~~~~~r~~~L~~aG~d~I~vd~a~g~------~~~~~~~i~~i~~~~~~~~vi~--G~v~-t~~~a~~l~~aGad~i~vg 293 (450)
T TIGR01302 223 EFDKERAEALVKAGVDVIVIDSSHGH------SIYVIDSIKEIKKTYPDLDIIA--GNVA-TAEQAKALIDAGADGLRVG 293 (450)
T ss_pred hhHHHHHHHHHHhCCCEEEEECCCCc------HhHHHHHHHHHHHhCCCCCEEE--EeCC-CHHHHHHHHHhCCCEEEEC
Confidence 35567788999999999999876532 3567899999999888765543 2222 6889999999999988432
Q ss_pred -----ccchHHHHHHhcCCCC-CHHHHHHHHHHHHHhCCCCceEEEeEEE-ecCCCHHHHHHHHHHHHHcCCcEEeeecC
Q 017200 240 -----IETVEELQSAVRDHRA-NFKQSLDVLMMAKDYVPAGTLTKTSIML-GCGETPDQVVSTMEKVRAAGVDVMTFGQY 312 (375)
Q Consensus 240 -----lEtv~rl~~~mr~r~~-s~~~~l~vl~~ak~~~p~Gl~tkt~imv-GlGET~ee~~etl~~Lrelgvd~v~i~qY 312 (375)
+.+.. .+.+.+. ...--.++.+.+++ .|++ +|. |=--|..|+...| .+|.+.+-+|..
T Consensus 294 ~g~G~~~~t~----~~~~~g~p~~~~i~~~~~~~~~---~~vp----viadGGi~~~~di~kAl----a~GA~~V~~G~~ 358 (450)
T TIGR01302 294 IGPGSICTTR----IVAGVGVPQITAVYDVAEYAAQ---SGIP----VIADGGIRYSGDIVKAL----AAGADAVMLGSL 358 (450)
T ss_pred CCCCcCCccc----eecCCCccHHHHHHHHHHHHhh---cCCe----EEEeCCCCCHHHHHHHH----HcCCCEEEECch
Confidence 22221 1111111 12222334444444 2344 333 1125788887776 569999988876
Q ss_pred C
Q 017200 313 M 313 (375)
Q Consensus 313 l 313 (375)
+
T Consensus 359 ~ 359 (450)
T TIGR01302 359 L 359 (450)
T ss_pred h
Confidence 6
No 233
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=89.06 E-value=7.9 Score=36.30 Aligned_cols=130 Identities=15% Similarity=0.200 Sum_probs=74.8
Q ss_pred chHHHHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCCCcEEEeecCCCCCChHHHHHHHHcCccccccc
Q 017200 160 DEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHN 239 (375)
Q Consensus 160 eEi~~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGldv~~hn 239 (375)
.++++.++.+.+.|++++++.--+.. ..+.....+.|+.|.+..+ +.+.+ -+... +.+.++.+.++|+|.+..+
T Consensus 32 ~~~~e~a~~~~~~G~~~l~i~dl~~~---~~~~~~~~~~i~~i~~~~~-~~l~v-~GGi~-~~~~~~~~~~~Ga~~v~iG 105 (241)
T PRK13585 32 GDPVEVAKRWVDAGAETLHLVDLDGA---FEGERKNAEAIEKIIEAVG-VPVQL-GGGIR-SAEDAASLLDLGVDRVILG 105 (241)
T ss_pred CCHHHHHHHHHHcCCCEEEEEechhh---hcCCcccHHHHHHHHHHcC-CcEEE-cCCcC-CHHHHHHHHHcCCCEEEEC
Confidence 46888899999999999987743321 1123345677777777653 33322 22232 6788999999999977554
Q ss_pred ccchHHHHHHhcCCCCCHHHHHHHHHHHHHhCCC-CceEEEeE----E--Eec-CCCHHHHHHHHHHHHHcCCcEEeee
Q 017200 240 IETVEELQSAVRDHRANFKQSLDVLMMAKDYVPA-GTLTKTSI----M--LGC-GETPDQVVSTMEKVRAAGVDVMTFG 310 (375)
Q Consensus 240 lEtv~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~-Gl~tkt~i----m--vGl-GET~ee~~etl~~Lrelgvd~v~i~ 310 (375)
-+..+ + .+.++.+.+.++. -+.+..++ + -|. .++..+.++..+.+.+.|++.+.+.
T Consensus 106 s~~~~-----------~----~~~~~~i~~~~g~~~i~~sid~~~~~v~~~g~~~~~~~~~~~~~~~~~~~G~~~i~~~ 169 (241)
T PRK13585 106 TAAVE-----------N----PEIVRELSEEFGSERVMVSLDAKDGEVVIKGWTEKTGYTPVEAAKRFEELGAGSILFT 169 (241)
T ss_pred hHHhh-----------C----hHHHHHHHHHhCCCcEEEEEEeeCCEEEECCCcccCCCCHHHHHHHHHHcCCCEEEEE
Confidence 22211 0 1223333333221 12222221 1 233 3344467788888889999988775
No 234
>TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase. A closely related enzyme, phosphonopyruvate hydrolase from Variovorax sp. Pal2, is excluded from this model.
Probab=88.81 E-value=6 Score=38.89 Aligned_cols=189 Identities=16% Similarity=0.219 Sum_probs=103.9
Q ss_pred CCcEEEEEeee---CCCCCcccHHHHHHHHHHHHHhCCCcEEEe-ecCCCCCC----hHHHHHHHHcCcccccccccchH
Q 017200 173 GLDYVVITSVD---RDDLADQGSGHFAQTVRKLKELKPNMLIEA-LVPDFRGN----NGCVREVAKSGLNVFAHNIETVE 244 (375)
Q Consensus 173 G~~eIvLTsgd---r~dl~d~G~~~~~~lir~Ik~~~p~i~Ie~-l~pd~~g~----~e~l~~L~~aGldv~~hnlEtv~ 244 (375)
|++-+-+||.- .--+||+|.-.+.+++..++...+.+.+.+ ...|--++ ...++.+.++|+..+ ++| |
T Consensus 38 Gf~ai~~ss~~~a~s~G~pD~~~~~~~e~~~~~~~I~~a~~~Pv~~D~d~Gg~~~~v~r~V~~l~~aGvaGi--~iE--D 113 (285)
T TIGR02320 38 GFDGIWSSSLTDSTSRGVPDIEEASWTQRLDVVEFMFDVTTKPIILDGDTGGNFEHFRRLVRKLERRGVSAV--CIE--D 113 (285)
T ss_pred CcCEEEechHHHHHHCCCCCcCcCCHHHHHHHHHHHHhhcCCCEEEecCCCCCHHHHHHHHHHHHHcCCeEE--EEe--c
Confidence 99888777642 234577654334444444443332222211 11111134 345788888886544 344 1
Q ss_pred HHHHHhcC--------CCCCHHHHHHHHHHHHHhCCC-CceE--EEeEEEecCCCHHHHHHHHHHHHHcCCcEEeeecCC
Q 017200 245 ELQSAVRD--------HRANFKQSLDVLMMAKDYVPA-GTLT--KTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQYM 313 (375)
Q Consensus 245 rl~~~mr~--------r~~s~~~~l~vl~~ak~~~p~-Gl~t--kt~imvGlGET~ee~~etl~~Lrelgvd~v~i~qYl 313 (375)
..+++.|+ .-.+.++..+.|+.+++.... .+.+ .|+-.++ ++..+|.++-.+...+.|.|.+-+ .+.
T Consensus 114 q~~pk~cg~~~~~~~~~l~s~ee~~~kI~Aa~~a~~~~~~~IiARTDa~~~-~~~~~eAi~Ra~ay~eAGAD~ifv-~~~ 191 (285)
T TIGR02320 114 KLGLKKNSLFGNDVAQPQASVEEFCGKIRAGKDAQTTEDFMIIARVESLIL-GKGMEDALKRAEAYAEAGADGIMI-HSR 191 (285)
T ss_pred cCCCccccccCCCCcccccCHHHHHHHHHHHHHhccCCCeEEEEecccccc-cCCHHHHHHHHHHHHHcCCCEEEe-cCC
Confidence 22333221 124678899999998875211 1333 4444321 345788889999999999998877 332
Q ss_pred CCCC-----------C---CCCccccCC--H-HHHHHHHHHHHHhhhhhhccc-hhhhhhcchhHHHHHHHHhhhh
Q 017200 314 RPSK-----------R---HMPVSEYIT--P-EAFERYRALGMEMGFRYVASG-PMVRSSYKVVGWCYYLIFNYRS 371 (375)
Q Consensus 314 ~P~~-----------~---~~~v~~~v~--p-e~~~~l~~~a~~~gf~~~~sg-p~vrssy~a~~~~~~~~~~~~~ 371 (375)
.++. . ..|+.-..+ | -.+++|. ++||..+.-| -+.|+.|+|-+..++.+.+...
T Consensus 192 ~~~~~ei~~~~~~~~~~~p~~pl~~~~~~~~~~~~~eL~----~lG~~~v~~~~~~~~aa~~a~~~~~~~~~~~g~ 263 (285)
T TIGR02320 192 KKDPDEILEFARRFRNHYPRTPLVIVPTSYYTTPTDEFR----DAGISVVIYANHLLRAAYAAMQQVAERILEHGR 263 (285)
T ss_pred CCCHHHHHHHHHHhhhhCCCCCEEEecCCCCCCCHHHHH----HcCCCEEEEhHHHHHHHHHHHHHHHHHHHHcCC
Confidence 1111 0 123211010 1 1244443 5688887654 3569999999999998886554
No 235
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=88.81 E-value=9.8 Score=36.92 Aligned_cols=167 Identities=19% Similarity=0.250 Sum_probs=93.1
Q ss_pred CcchHHHHHHHHHhcCCcEEEEEeee--C----CCCCcccHHHHHHHHHHHHHhC--CCcEEEeecCCCCCChHHHHHHH
Q 017200 158 DPDEPTNVAEAIASWGLDYVVITSVD--R----DDLADQGSGHFAQTVRKLKELK--PNMLIEALVPDFRGNNGCVREVA 229 (375)
Q Consensus 158 d~eEi~~~a~al~~~G~~eIvLTsgd--r----~dl~d~G~~~~~~lir~Ik~~~--p~i~Ie~l~pd~~g~~e~l~~L~ 229 (375)
++++..+.|+.+.+.|++.|-|.-.- . +++. ...+.+.++++.+++.. | +.++ +.|+.....+.++.+.
T Consensus 100 ~~~~~~~~a~~~~~~G~d~iElN~~cP~~~~~g~~~~-~~~~~~~eiv~~vr~~~~~P-v~vK-l~~~~~~~~~~a~~~~ 176 (296)
T cd04740 100 TVEEFVEVAEKLADAGADAIELNISCPNVKGGGMAFG-TDPEAVAEIVKAVKKATDVP-VIVK-LTPNVTDIVEIARAAE 176 (296)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEECCCCCCCCCccccc-CCHHHHHHHHHHHHhccCCC-EEEE-eCCCchhHHHHHHHHH
Confidence 37889999999999999988885431 1 1111 12466788999998764 3 4444 4565421235566788
Q ss_pred HcCcccccc-c--------ccchHHHH----HHhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEec-C-CCHHHHHH
Q 017200 230 KSGLNVFAH-N--------IETVEELQ----SAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGC-G-ETPDQVVS 294 (375)
Q Consensus 230 ~aGldv~~h-n--------lEtv~rl~----~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~tkt~imvGl-G-ET~ee~~e 294 (375)
++|+|.+.. | .++..... .-+. ....+...++.++.+++.. ++ - ++|- | .|.+++.+
T Consensus 177 ~~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~s-g~~~~~~~~~~i~~i~~~~--~i----p-ii~~GGI~~~~da~~ 248 (296)
T cd04740 177 EAGADGLTLINTLKGMAIDIETRKPILGNVTGGLS-GPAIKPIALRMVYQVYKAV--EI----P-IIGVGGIASGEDALE 248 (296)
T ss_pred HcCCCEEEEECCCcccccccccCceeecCCcceec-CcccchHHHHHHHHHHHhc--CC----C-EEEECCCCCHHHHHH
Confidence 899986531 1 11110000 0011 1222334677777777742 12 2 2233 2 57788887
Q ss_pred HHHHHHHcCCcEEeeecCCCCCCCCCCccccCCHHHHHHHHHHHHHhhhhhh
Q 017200 295 TMEKVRAAGVDVMTFGQYMRPSKRHMPVSEYITPEAFERYRALGMEMGFRYV 346 (375)
Q Consensus 295 tl~~Lrelgvd~v~i~qYl~P~~~~~~v~~~v~pe~~~~l~~~a~~~gf~~~ 346 (375)
.| +.|.|.|-++.-+ +. ...+...-.+.+.++..+.||..+
T Consensus 249 ~l----~~GAd~V~igra~------l~-~p~~~~~i~~~l~~~~~~~g~~~~ 289 (296)
T cd04740 249 FL----MAGASAVQVGTAN------FV-DPEAFKEIIEGLEAYLDEEGIKSI 289 (296)
T ss_pred HH----HcCCCEEEEchhh------hc-ChHHHHHHHHHHHHHHHHcCCCCH
Confidence 77 3789999887321 11 111222334556666667777544
No 236
>PF04476 DUF556: Protein of unknown function (DUF556); InterPro: IPR007565 The proteins in this entry are functionally uncharacterised.
Probab=88.57 E-value=24 Score=33.88 Aligned_cols=168 Identities=15% Similarity=0.215 Sum_probs=102.4
Q ss_pred HHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCCC-cEEEeecCCCCCChHHH----HHHHHcCccccccc
Q 017200 165 VAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPN-MLIEALVPDFRGNNGCV----REVAKSGLNVFAHN 239 (375)
Q Consensus 165 ~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p~-i~Ie~l~pd~~g~~e~l----~~L~~aGldv~~hn 239 (375)
+|..+.+.|.+-|-+=--.+.. .|+ .+..+|++|++..|+ ..+.+-++|+--.+..+ .....+|+|.+..+
T Consensus 12 EA~~a~~~gaDiID~K~P~~Ga---LGA-~~~~vi~~i~~~~~~~~pvSAtiGDlp~~p~~~~~aa~~~a~~GvdyvKvG 87 (235)
T PF04476_consen 12 EAEEALAGGADIIDLKNPAEGA---LGA-LFPWVIREIVAAVPGRKPVSATIGDLPMKPGTASLAALGAAATGVDYVKVG 87 (235)
T ss_pred HHHHHHhCCCCEEEccCCCCCC---CCC-CCHHHHHHHHHHcCCCCceEEEecCCCCCchHHHHHHHHHHhcCCCEEEEe
Confidence 4555667787777332111111 233 378889999887763 67888888774343333 23455788887765
Q ss_pred ccchHHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCc-eEEEeEEEecCCCHH----HHHHHHHHHHHcCCcEEeeecCCC
Q 017200 240 IETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGT-LTKTSIMLGCGETPD----QVVSTMEKVRAAGVDVMTFGQYMR 314 (375)
Q Consensus 240 lEtv~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl-~tkt~imvGlGET~e----e~~etl~~Lrelgvd~v~i~qYl~ 314 (375)
+- ...++++.++.++.+.+.... . .-+.=+-+|+..... +-.+....+.+.|++.+-+=.+.
T Consensus 88 l~-----------g~~~~~~a~e~l~~v~~av~~-~~~~~~vVAv~yAD~~r~~~~~p~~l~~~a~~aG~~gvMlDTa~- 154 (235)
T PF04476_consen 88 LF-----------GCKDYDEAIEALEAVVRAVKD-FDPDKKVVAVGYADAQRVGSISPLDLPEIAAEAGFDGVMLDTAD- 154 (235)
T ss_pred cC-----------CCCCHHHHHHHHHHHHHHHhh-hCCCcEEEEEEecchhhhcCCCHHHHHHHHHHcCCCEEEEeccc-
Confidence 31 234566666666554332111 1 112335556644321 23466778889999988775332
Q ss_pred CCCCCCCccccCCHHHHHHHHHHHHHhhhhhhccchh
Q 017200 315 PSKRHMPVSEYITPEAFERYRALGMEMGFRYVASGPM 351 (375)
Q Consensus 315 P~~~~~~v~~~v~pe~~~~l~~~a~~~gf~~~~sgp~ 351 (375)
+.+..+.+++.+++...+-+.+++.|......|.|
T Consensus 155 --Kdg~~L~d~~~~~~L~~Fv~~ar~~gL~~aLAGSL 189 (235)
T PF04476_consen 155 --KDGGSLFDHLSEEELAEFVAQARAHGLMCALAGSL 189 (235)
T ss_pred --CCCCchhhcCCHHHHHHHHHHHHHccchhhccccC
Confidence 34455667788999999999999999988888743
No 237
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=88.45 E-value=22 Score=33.54 Aligned_cols=112 Identities=17% Similarity=0.257 Sum_probs=70.4
Q ss_pred CCcchHHHHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCCC--cEEEeecCCCCCChHHHHHHHHcCcc
Q 017200 157 PDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPN--MLIEALVPDFRGNNGCVREVAKSGLN 234 (375)
Q Consensus 157 ld~eEi~~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p~--i~Ie~l~pd~~g~~e~l~~L~~aGld 234 (375)
.|+..+.+.++.+.+.|++.+++==-|..-.|.-.+. .++++.|++..++ +.+++.+-+ ....++.++++|+|
T Consensus 9 ad~~~l~~~i~~l~~~g~~~lH~DvmDG~Fvpn~tfg--~~~i~~i~~~~~~~~~dvHLMv~~---p~~~i~~~~~~gad 83 (220)
T PRK08883 9 ADFARLGEDVEKVLAAGADVVHFDVMDNHYVPNLTFG--APICKALRDYGITAPIDVHLMVKP---VDRIIPDFAKAGAS 83 (220)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEEecccCcccCccccC--HHHHHHHHHhCCCCCEEEEeccCC---HHHHHHHHHHhCCC
Confidence 4666788889999999999998765554433431111 4577888764222 455655532 24578999999999
Q ss_pred cccccccchHHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecCCCHHHH
Q 017200 235 VFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQV 292 (375)
Q Consensus 235 v~~hnlEtv~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~tkt~imvGlGET~ee~ 292 (375)
.+....|+.+. ..++++.+|+ .| .++++-+.-+=..+.+
T Consensus 84 ~i~~H~Ea~~~--------------~~~~l~~ik~---~g--~k~GlalnP~Tp~~~i 122 (220)
T PRK08883 84 MITFHVEASEH--------------VDRTLQLIKE---HG--CQAGVVLNPATPLHHL 122 (220)
T ss_pred EEEEcccCccc--------------HHHHHHHHHH---cC--CcEEEEeCCCCCHHHH
Confidence 99988886321 1244555555 35 4666666665333333
No 238
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=88.35 E-value=5 Score=42.22 Aligned_cols=133 Identities=20% Similarity=0.305 Sum_probs=89.5
Q ss_pred chHHHHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCCCcEEEeecCCCCCChHHHHHHHHcCccccccc
Q 017200 160 DEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHN 239 (375)
Q Consensus 160 eEi~~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGldv~~hn 239 (375)
++..+.++++.+.|++-|+|=.-+. -...+.++|+.||+.+|++.|-+ ++..+.+..+.|.++|+|.+..+
T Consensus 224 ~~~~~ra~~Lv~aGVd~i~~D~a~g------~~~~~~~~i~~i~~~~~~~~vi~---g~~~t~~~~~~l~~~G~d~i~vg 294 (475)
T TIGR01303 224 GDVGGKAKALLDAGVDVLVIDTAHG------HQVKMISAIKAVRALDLGVPIVA---GNVVSAEGVRDLLEAGANIIKVG 294 (475)
T ss_pred ccHHHHHHHHHHhCCCEEEEeCCCC------CcHHHHHHHHHHHHHCCCCeEEE---eccCCHHHHHHHHHhCCCEEEEC
Confidence 5778899999999999998855442 14678999999999988876543 44447899999999999998644
Q ss_pred cc----chHHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcCCcEEeeecCC
Q 017200 240 IE----TVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQYM 313 (375)
Q Consensus 240 lE----tv~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~tkt~imvGlGET~ee~~etl~~Lrelgvd~v~i~qYl 313 (375)
+= +.-+.+.-+. .....--+++.+.+++. |+.+-++ |=--+..|+...| .+|.+.+.++.+|
T Consensus 295 ~g~Gs~~ttr~~~~~g--~~~~~a~~~~~~~~~~~---~~~viad---Ggi~~~~di~kal----a~GA~~vm~g~~~ 360 (475)
T TIGR01303 295 VGPGAMCTTRMMTGVG--RPQFSAVLECAAEARKL---GGHVWAD---GGVRHPRDVALAL----AAGASNVMVGSWF 360 (475)
T ss_pred CcCCccccCccccCCC--CchHHHHHHHHHHHHHc---CCcEEEe---CCCCCHHHHHHHH----HcCCCEEeechhh
Confidence 32 1113322222 22344456666666663 3432221 1136778887766 4899999998776
No 239
>PRK08745 ribulose-phosphate 3-epimerase; Provisional
Probab=88.33 E-value=19 Score=34.12 Aligned_cols=116 Identities=14% Similarity=0.198 Sum_probs=75.0
Q ss_pred CCcchHHHHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCCC--cEEEeecCCCCCChHHHHHHHHcCcc
Q 017200 157 PDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPN--MLIEALVPDFRGNNGCVREVAKSGLN 234 (375)
Q Consensus 157 ld~eEi~~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p~--i~Ie~l~pd~~g~~e~l~~L~~aGld 234 (375)
.|+-.+.+.++.+.+.|++++++==.|..-.|.-.+. .++++.|++..++ +.+++.+-+ ....++.+.++|+|
T Consensus 13 ad~~~l~~~i~~l~~~g~d~lHiDimDG~FVPN~tfg--~~~i~~lr~~~~~~~~dvHLMv~~---P~~~i~~~~~~gad 87 (223)
T PRK08745 13 ADFARLGEEVDNVLKAGADWVHFDVMDNHYVPNLTIG--PMVCQALRKHGITAPIDVHLMVEP---VDRIVPDFADAGAT 87 (223)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEEecccCccCCCcccC--HHHHHHHHhhCCCCCEEEEeccCC---HHHHHHHHHHhCCC
Confidence 4666888899999999999998766554433431111 4577888765222 455555532 24578999999999
Q ss_pred cccccccchHHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHH
Q 017200 235 VFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTM 296 (375)
Q Consensus 235 v~~hnlEtv~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~tkt~imvGlGET~ee~~etl 296 (375)
.+....|..+. -.++++.+|+ .| .++++-+.-+-..+.+...+
T Consensus 88 ~I~~H~Ea~~~--------------~~~~l~~Ir~---~g--~k~GlalnP~T~~~~i~~~l 130 (223)
T PRK08745 88 TISFHPEASRH--------------VHRTIQLIKS---HG--CQAGLVLNPATPVDILDWVL 130 (223)
T ss_pred EEEEcccCccc--------------HHHHHHHHHH---CC--CceeEEeCCCCCHHHHHHHH
Confidence 99988885321 2355666677 45 47777777764444444443
No 240
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=88.32 E-value=16 Score=35.13 Aligned_cols=130 Identities=11% Similarity=0.125 Sum_probs=78.1
Q ss_pred chHHHHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCCCcEEEeecCCCCCChHHHHHHHHcCccccccc
Q 017200 160 DEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHN 239 (375)
Q Consensus 160 eEi~~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGldv~~hn 239 (375)
.+|++.|+.+.+.|++++++|=.++..-. ...-.++++.|.+.. .+.|.+- +... +.+.++.+.++|++.+-.|
T Consensus 30 ~dp~~~a~~~~~~g~~~l~i~Dl~~~~~~---~~~n~~~i~~i~~~~-~~pv~~g-GGi~-s~~d~~~l~~~G~~~vvig 103 (258)
T PRK01033 30 GDPINAVRIFNEKEVDELIVLDIDASKRG---SEPNYELIENLASEC-FMPLCYG-GGIK-TLEQAKKIFSLGVEKVSIN 103 (258)
T ss_pred CCHHHHHHHHHHcCCCEEEEEECCCCcCC---CcccHHHHHHHHHhC-CCCEEEC-CCCC-CHHHHHHHHHCCCCEEEEC
Confidence 47889999999999999999977654211 122367788887653 3444322 2222 6778888889998877665
Q ss_pred ccchHHHHHHhcCCCCCHHHHHHHHHHHHHhCC-CCceEEEeEEEec------------CCCHHHHHHHHHHHHHcCCcE
Q 017200 240 IETVEELQSAVRDHRANFKQSLDVLMMAKDYVP-AGTLTKTSIMLGC------------GETPDQVVSTMEKVRAAGVDV 306 (375)
Q Consensus 240 lEtv~rl~~~mr~r~~s~~~~l~vl~~ak~~~p-~Gl~tkt~imvGl------------GET~ee~~etl~~Lrelgvd~ 306 (375)
-++.+ . .+.++.+.+.++ .-+.+.-++=-|. -.+..+..+.++.+.+.+++.
T Consensus 104 s~~~~----~-----------~~~~~~~~~~~~~~~i~vsiD~k~g~~~~~~v~~~gw~~~~~~~~~e~~~~~~~~g~~~ 168 (258)
T PRK01033 104 TAALE----D-----------PDLITEAAERFGSQSVVVSIDVKKNLGGKFDVYTHNGTKKLKKDPLELAKEYEALGAGE 168 (258)
T ss_pred hHHhc----C-----------HHHHHHHHHHhCCCcEEEEEEEecCCCCcEEEEEcCCeecCCCCHHHHHHHHHHcCCCE
Confidence 22211 0 123333333222 1133333332221 135556788888999999998
Q ss_pred Eeee
Q 017200 307 MTFG 310 (375)
Q Consensus 307 v~i~ 310 (375)
+.+.
T Consensus 169 ii~~ 172 (258)
T PRK01033 169 ILLN 172 (258)
T ss_pred EEEE
Confidence 8775
No 241
>cd04824 eu_ALAD_PBGS_cysteine_rich Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. The eukaryotic PBGSs represented by this model, which contain a cysteine-rich zinc binding motif (DXCXCX(Y/F)X3G(H/Q)CG), require zinc for their activity, they
Probab=88.26 E-value=5.1 Score=39.90 Aligned_cols=56 Identities=21% Similarity=0.325 Sum_probs=43.0
Q ss_pred CCCcchHHHHHHHHHhcCCcEEEEEeeeCCCCCc-c-c------HHHHHHHHHHHHHhCCCcEE
Q 017200 156 PPDPDEPTNVAEAIASWGLDYVVITSVDRDDLAD-Q-G------SGHFAQTVRKLKELKPNMLI 211 (375)
Q Consensus 156 ~ld~eEi~~~a~al~~~G~~eIvLTsgdr~dl~d-~-G------~~~~~~lir~Ik~~~p~i~I 211 (375)
.++.+.+++.++.+.+.|++.|.|=|+......| . | -.-+...|+.||+.+|++.|
T Consensus 47 r~s~d~l~~~~~~~~~~Gi~~v~LFgv~~~~~Kd~~~gs~a~~~~g~v~~air~iK~~~pdl~v 110 (320)
T cd04824 47 RYGVNRLEEFLRPLVAKGLRSVILFGVPLKPGKDDRSGSAADDEDGPVIQAIKLIREEFPELLI 110 (320)
T ss_pred eeCHHHHHHHHHHHHHCCCCEEEEeCCCccccCCcCccccccCCCChHHHHHHHHHHhCCCcEE
Confidence 3789999999999999999999999984222221 1 1 12367899999999999765
No 242
>PRK09283 delta-aminolevulinic acid dehydratase; Validated
Probab=88.26 E-value=5.2 Score=39.96 Aligned_cols=53 Identities=25% Similarity=0.374 Sum_probs=42.3
Q ss_pred CCcchHHHHHHHHHhcCCcEEEEEeeeCCCCCcc-c------HHHHHHHHHHHHHhCCCcEE
Q 017200 157 PDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQ-G------SGHFAQTVRKLKELKPNMLI 211 (375)
Q Consensus 157 ld~eEi~~~a~al~~~G~~eIvLTsgdr~dl~d~-G------~~~~~~lir~Ik~~~p~i~I 211 (375)
++.+++++.++.+.+.|++.|.|=|+. +..|. | -.-+...|+.||+.+|++.|
T Consensus 56 ~s~d~l~~~v~~~~~~Gi~av~LFgv~--~~Kd~~gs~A~~~~g~v~rair~iK~~~p~l~v 115 (323)
T PRK09283 56 LSIDLLVKEAEEAVELGIPAVALFGVP--ELKDEDGSEAYNPDGLVQRAIRAIKKAFPELGV 115 (323)
T ss_pred eCHHHHHHHHHHHHHCCCCEEEEeCcC--CCCCcccccccCCCCHHHHHHHHHHHhCCCcEE
Confidence 789999999999999999999999982 22221 1 12478899999999999765
No 243
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=88.20 E-value=3.6 Score=40.07 Aligned_cols=148 Identities=18% Similarity=0.302 Sum_probs=81.7
Q ss_pred HHHHHHHHHHhCCCcEEEeec---CCCCCChHHHHHHHHcCcccccccccch---------H-HHHHHhcCCCCCHHHHH
Q 017200 195 FAQTVRKLKELKPNMLIEALV---PDFRGNNGCVREVAKSGLNVFAHNIETV---------E-ELQSAVRDHRANFKQSL 261 (375)
Q Consensus 195 ~~~lir~Ik~~~p~i~Ie~l~---pd~~g~~e~l~~L~~aGldv~~hnlEtv---------~-rl~~~mr~r~~s~~~~l 261 (375)
+.+.++++++..-...|--++ |+.....+.++.|.++|+|.+..++-.+ . ...+.++ .+.+.++.+
T Consensus 4 ~~~~F~~l~~~~~~a~i~yit~GdP~~e~s~e~i~~L~~~GaD~iELGvPfSDPvADGP~Iq~A~~rAL~-~g~t~~~~l 82 (265)
T COG0159 4 LDQKFAQLKAENRGALIPYVTAGDPDLETSLEIIKTLVEAGADILELGVPFSDPVADGPTIQAAHLRALA-AGVTLEDTL 82 (265)
T ss_pred HHHHHHHHHHhCCCCeEEEEeCCCCCHHHHHHHHHHHHhCCCCEEEecCCCCCcCccCHHHHHHHHHHHH-CCCCHHHHH
Confidence 445566666554334444333 3332246667777888888877775322 1 2234455 588999999
Q ss_pred HHHHHHHHhC---CCCceEEEeEEEecCCCHHHHHHHHHHHHHcCCcEEeeecCCCCC----------CCCCCccccCCH
Q 017200 262 DVLMMAKDYV---PAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQYMRPS----------KRHMPVSEYITP 328 (375)
Q Consensus 262 ~vl~~ak~~~---p~Gl~tkt~imvGlGET~ee~~etl~~Lrelgvd~v~i~qYl~P~----------~~~~~v~~~v~p 328 (375)
++++.+++.. |.++.+-.+.++=.| +...++.+++.|+|-+-+-. +.|- ..++...-.+.|
T Consensus 83 el~~~~r~~~~~~Pivlm~Y~Npi~~~G-----ie~F~~~~~~~GvdGlivpD-LP~ee~~~~~~~~~~~gi~~I~lvaP 156 (265)
T COG0159 83 ELVEEIRAKGVKVPIVLMTYYNPIFNYG-----IEKFLRRAKEAGVDGLLVPD-LPPEESDELLKAAEKHGIDPIFLVAP 156 (265)
T ss_pred HHHHHHHhcCCCCCEEEEEeccHHHHhh-----HHHHHHHHHHcCCCEEEeCC-CChHHHHHHHHHHHHcCCcEEEEeCC
Confidence 9999999642 222222333332223 34467788889998776622 2220 012332223333
Q ss_pred H-HHHHHHHHHHH-hhhhhhccc
Q 017200 329 E-AFERYRALGME-MGFRYVASG 349 (375)
Q Consensus 329 e-~~~~l~~~a~~-~gf~~~~sg 349 (375)
. ..++++.++.. .||.|..|=
T Consensus 157 tt~~~rl~~i~~~a~GFiY~vs~ 179 (265)
T COG0159 157 TTPDERLKKIAEAASGFIYYVSR 179 (265)
T ss_pred CCCHHHHHHHHHhCCCcEEEEec
Confidence 2 24556666554 599988654
No 244
>TIGR01496 DHPS dihydropteroate synthase. This model represents dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. The gene is usually designated folP (folic acid biosynthsis) or sul (sulfanilamide resistance). This model represents one branch of the family of pterin-binding enzymes (pfam00809) and of a cluster of dihydropteroate synthase and related enzymes (COG0294). Other members of pfam00809 and COG0294 are represented by TIGR00284.
Probab=88.00 E-value=12 Score=36.14 Aligned_cols=78 Identities=13% Similarity=0.193 Sum_probs=51.0
Q ss_pred CCCcchHHHHHHHHHhcCCcEEEEEee-eCCCCCcc----cHHHHHHHHHHHHHhCCCcEEEeecCCCCCChHHHHHHHH
Q 017200 156 PPDPDEPTNVAEAIASWGLDYVVITSV-DRDDLADQ----GSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAK 230 (375)
Q Consensus 156 ~ld~eEi~~~a~al~~~G~~eIvLTsg-dr~dl~d~----G~~~~~~lir~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~ 230 (375)
..+++++++.|++..+.|.+.|-|=+. .+++.... -.+.+..+|+.+++.. ++.|.+= .+ +.+.++.-.+
T Consensus 19 ~~~~~~~~~~a~~~~~~GA~iIDIG~~st~p~~~~i~~~~E~~rl~~~v~~~~~~~-~~plsiD--T~--~~~vi~~al~ 93 (257)
T TIGR01496 19 FLSVDKAVAHAERMLEEGADIIDVGGESTRPGADRVSPEEELNRVVPVIKALRDQP-DVPISVD--TY--RAEVARAALE 93 (257)
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcC-CCeEEEe--CC--CHHHHHHHHH
Confidence 368899999999999999999999322 23332210 1234667777776543 3333221 12 5778888878
Q ss_pred cCcccccc
Q 017200 231 SGLNVFAH 238 (375)
Q Consensus 231 aGldv~~h 238 (375)
+|.+.+++
T Consensus 94 ~G~~iINs 101 (257)
T TIGR01496 94 AGADIIND 101 (257)
T ss_pred cCCCEEEE
Confidence 89988876
No 245
>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase. These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....
Probab=87.99 E-value=1.8 Score=43.85 Aligned_cols=135 Identities=21% Similarity=0.314 Sum_probs=85.0
Q ss_pred chHHHHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCCCcEEEeecCCCCCChHHHHHHHHcCccccccc
Q 017200 160 DEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHN 239 (375)
Q Consensus 160 eEi~~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGldv~~hn 239 (375)
++-.+.++++.+.|++.|+|-+-+.. ..+..+.++.||+.+|++.|- .++. .+.+..+.|.++|+|.+-.+
T Consensus 107 ~~~~er~~~L~~agvD~ivID~a~g~------s~~~~~~ik~ik~~~~~~~vi--aGNV-~T~e~a~~L~~aGad~vkVG 177 (352)
T PF00478_consen 107 DDDFERAEALVEAGVDVIVIDSAHGH------SEHVIDMIKKIKKKFPDVPVI--AGNV-VTYEGAKDLIDAGADAVKVG 177 (352)
T ss_dssp TCHHHHHHHHHHTT-SEEEEE-SSTT------SHHHHHHHHHHHHHSTTSEEE--EEEE--SHHHHHHHHHTT-SEEEES
T ss_pred HHHHHHHHHHHHcCCCEEEccccCcc------HHHHHHHHHHHHHhCCCceEE--eccc-CCHHHHHHHHHcCCCEEEEe
Confidence 45677888899999999998765432 578999999999999976553 3332 26889999999999988666
Q ss_pred cc-chHHHHHHhcC-CCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcCCcEEeeecCC
Q 017200 240 IE-TVEELQSAVRD-HRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQYM 313 (375)
Q Consensus 240 lE-tv~rl~~~mr~-r~~s~~~~l~vl~~ak~~~p~Gl~tkt~imvGlGET~ee~~etl~~Lrelgvd~v~i~qYl 313 (375)
+= .+--..+.+.. ......-..++-+.+++. |+++-++- | --+.-|+...| ..|-|.|-+|.+|
T Consensus 178 iGpGsiCtTr~v~GvG~PQ~tAv~~~a~~a~~~---~v~iIADG--G-i~~sGDi~KAl----a~GAd~VMlG~ll 243 (352)
T PF00478_consen 178 IGPGSICTTREVTGVGVPQLTAVYECAEAARDY---GVPIIADG--G-IRTSGDIVKAL----AAGADAVMLGSLL 243 (352)
T ss_dssp SSSSTTBHHHHHHSBSCTHHHHHHHHHHHHHCT---TSEEEEES--S--SSHHHHHHHH----HTT-SEEEESTTT
T ss_pred ccCCcccccccccccCCcHHHHHHHHHHHhhhc---cCceeecC--C-cCcccceeeee----eecccceeechhh
Confidence 43 11111222221 122344445666666653 45554443 1 15777777666 5788988888776
No 246
>PF04476 DUF556: Protein of unknown function (DUF556); InterPro: IPR007565 The proteins in this entry are functionally uncharacterised.
Probab=87.83 E-value=5.7 Score=38.01 Aligned_cols=162 Identities=20% Similarity=0.310 Sum_probs=98.7
Q ss_pred CCCCCCcchHHHHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCCCc-EEEeecCCCCC-----ChHHHH
Q 017200 153 APPPPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNM-LIEALVPDFRG-----NNGCVR 226 (375)
Q Consensus 153 ~~~~ld~eEi~~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p~i-~Ie~l~pd~~g-----~~e~l~ 226 (375)
+..+++|..+...+..++..|++||-+-=-...+. +...+.+..+++.++...++. .|-++..|+.. ..+..+
T Consensus 60 GDlp~~p~~~~~aa~~~a~~GvdyvKvGl~g~~~~-~~a~e~l~~v~~av~~~~~~~~vVAv~yAD~~r~~~~~p~~l~~ 138 (235)
T PF04476_consen 60 GDLPMKPGTASLAALGAAATGVDYVKVGLFGCKDY-DEAIEALEAVVRAVKDFDPDKKVVAVGYADAQRVGSISPLDLPE 138 (235)
T ss_pred cCCCCCchHHHHHHHHHHhcCCCEEEEecCCCCCH-HHHHHHHHHHHHHHhhhCCCcEEEEEEecchhhhcCCCHHHHHH
Confidence 34566777777777777888999997532111111 112344555667777655554 45567677631 245667
Q ss_pred HHHHcCcccccccccchH----HHHHHhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEec-CCCHHHHHHHHHHHHH
Q 017200 227 EVAKSGLNVFAHNIETVE----ELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGC-GETPDQVVSTMEKVRA 301 (375)
Q Consensus 227 ~L~~aGldv~~hnlEtv~----rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~tkt~imvGl-GET~ee~~etl~~Lre 301 (375)
..+++|.+. ..++|.. .++..| +.++--+.++.+|+ .| +|.|| |-= ..+.+..|+.
T Consensus 139 ~a~~aG~~g--vMlDTa~Kdg~~L~d~~-----~~~~L~~Fv~~ar~---~g------L~~aLAGSL---~~~di~~L~~ 199 (235)
T PF04476_consen 139 IAAEAGFDG--VMLDTADKDGGSLFDHL-----SEEELAEFVAQARA---HG------LMCALAGSL---RFEDIPRLKR 199 (235)
T ss_pred HHHHcCCCE--EEEecccCCCCchhhcC-----CHHHHHHHHHHHHH---cc------chhhccccC---ChhHHHHHHh
Confidence 778999653 3577753 555544 46777778888887 44 56777 532 3456777888
Q ss_pred cCCcEEeeecCCCCC-CCCCCccccCCHHHHHHHHHH
Q 017200 302 AGVDVMTFGQYMRPS-KRHMPVSEYITPEAFERYRAL 337 (375)
Q Consensus 302 lgvd~v~i~qYl~P~-~~~~~v~~~v~pe~~~~l~~~ 337 (375)
+++|++.|---+--. .+.. ..+.|+....|++.
T Consensus 200 l~pD~lGfRGAvC~ggdR~~---G~id~~~V~~lr~~ 233 (235)
T PF04476_consen 200 LGPDILGFRGAVCGGGDRRA---GRIDPELVAALRAL 233 (235)
T ss_pred cCCCEEEechhhCCCCCcCc---cccCHHHHHHHHHh
Confidence 999999984222222 1111 13568888877754
No 247
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=87.77 E-value=4.5 Score=39.07 Aligned_cols=78 Identities=12% Similarity=0.125 Sum_probs=55.0
Q ss_pred hHHHHHHHHcCcccccccccchHHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEec-CCCHHHHHHHHHHHH
Q 017200 222 NGCVREVAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGC-GETPDQVVSTMEKVR 300 (375)
Q Consensus 222 ~e~l~~L~~aGldv~~hnlEtv~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~tkt~imvGl-GET~ee~~etl~~Lr 300 (375)
.+.++.+.+.|++.+-.+-.+.+- ..-+.+++.++++.+.+.... ...+|+|. +.+-+|.++..+..+
T Consensus 24 ~~~i~~l~~~Gv~gl~v~GstGE~-------~~lt~~Er~~l~~~~~~~~~~----~~~vi~gv~~~~~~~~~~~a~~a~ 92 (284)
T cd00950 24 ERLIEFQIENGTDGLVVCGTTGES-------PTLSDEEHEAVIEAVVEAVNG----RVPVIAGTGSNNTAEAIELTKRAE 92 (284)
T ss_pred HHHHHHHHHcCCCEEEECCCCcch-------hhCCHHHHHHHHHHHHHHhCC----CCcEEeccCCccHHHHHHHHHHHH
Confidence 456677778888765433222221 134678888999888885432 45688999 578999999999999
Q ss_pred HcCCcEEeee
Q 017200 301 AAGVDVMTFG 310 (375)
Q Consensus 301 elgvd~v~i~ 310 (375)
++|+|.+-+.
T Consensus 93 ~~G~d~v~~~ 102 (284)
T cd00950 93 KAGADAALVV 102 (284)
T ss_pred HcCCCEEEEc
Confidence 9999976663
No 248
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=87.69 E-value=18 Score=31.91 Aligned_cols=131 Identities=13% Similarity=0.156 Sum_probs=78.1
Q ss_pred CcchHHHHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCCC--cEEE--eecCC----CCCChHHHHHHH
Q 017200 158 DPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPN--MLIE--ALVPD----FRGNNGCVREVA 229 (375)
Q Consensus 158 d~eEi~~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p~--i~Ie--~l~pd----~~g~~e~l~~L~ 229 (375)
|.+.+.+.++.+.+.|++-|+++| ++++.+.+..++ +.+- +-.+. .....+.++...
T Consensus 11 d~~~~~~~~~~~~~~gv~gi~~~g---------------~~i~~~~~~~~~~~~~v~~~v~~~~~~~~~~~~~~~a~~a~ 75 (201)
T cd00945 11 TLEDIAKLCDEAIEYGFAAVCVNP---------------GYVRLAADALAGSDVPVIVVVGFPTGLTTTEVKVAEVEEAI 75 (201)
T ss_pred CHHHHHHHHHHHHHhCCcEEEECH---------------HHHHHHHHHhCCCCCeEEEEecCCCCCCcHHHHHHHHHHHH
Confidence 788899999999999999998886 334444433332 4332 22222 111346677888
Q ss_pred HcCcccccccccchHHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcCCcEEee
Q 017200 230 KSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTF 309 (375)
Q Consensus 230 ~aGldv~~hnlEtv~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~tkt~imvGlGET~ee~~etl~~Lrelgvd~v~i 309 (375)
++|+|.+... .-.|... ..+.+.-++.++.+.+..+.++++-...+-+.--+.+++.+..+.+.+.+++.|..
T Consensus 76 ~~Gad~i~v~----~~~~~~~---~~~~~~~~~~~~~i~~~~~~~~pv~iy~~p~~~~~~~~~~~~~~~~~~~g~~~iK~ 148 (201)
T cd00945 76 DLGADEIDVV----INIGSLK---EGDWEEVLEEIAAVVEAADGGLPLKVILETRGLKTADEIAKAARIAAEAGADFIKT 148 (201)
T ss_pred HcCCCEEEEe----ccHHHHh---CCCHHHHHHHHHHHHHHhcCCceEEEEEECCCCCCHHHHHHHHHHHHHhCCCEEEe
Confidence 8898865431 1112111 11245555555555553212466555555443346788888888888999999887
Q ss_pred e
Q 017200 310 G 310 (375)
Q Consensus 310 ~ 310 (375)
+
T Consensus 149 ~ 149 (201)
T cd00945 149 S 149 (201)
T ss_pred C
Confidence 4
No 249
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=87.65 E-value=3 Score=39.70 Aligned_cols=94 Identities=19% Similarity=0.309 Sum_probs=56.2
Q ss_pred CCcchHHHHHHHHHhcCCcEEEEEeeeCCCCCccc---------------HHHHHHHHHHHHHhCCCcEEEee---cCCC
Q 017200 157 PDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQG---------------SGHFAQTVRKLKELKPNMLIEAL---VPDF 218 (375)
Q Consensus 157 ld~eEi~~~a~al~~~G~~eIvLTsgdr~dl~d~G---------------~~~~~~lir~Ik~~~p~i~Ie~l---~pd~ 218 (375)
.+.+...+.++++.+.|++.+.|-=--.|-..||. .....+.++.+++.. ++.+.++ .|-+
T Consensus 11 P~~~~~~~~~~~l~~~Gad~iel~iPfsdPv~DG~~I~~a~~~al~~g~~~~~~~~~~~~vr~~~-~~pv~lm~y~n~~~ 89 (242)
T cd04724 11 PDLETTLEILKALVEAGADIIELGIPFSDPVADGPVIQAASERALANGVTLKDVLELVKEIRKKN-TIPIVLMGYYNPIL 89 (242)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhhcC-CCCEEEEEecCHHH
Confidence 35678899999999999999987621111122321 125677888888653 2333332 2322
Q ss_pred C-CChHHHHHHHHcCcccccc---cccchHHHHHHhc
Q 017200 219 R-GNNGCVREVAKSGLNVFAH---NIETVEELQSAVR 251 (375)
Q Consensus 219 ~-g~~e~l~~L~~aGldv~~h---nlEtv~rl~~~mr 251 (375)
. |-...++.++++|+|.+-. ..|...++.+.++
T Consensus 90 ~~G~~~fi~~~~~aG~~giiipDl~~ee~~~~~~~~~ 126 (242)
T cd04724 90 QYGLERFLRDAKEAGVDGLIIPDLPPEEAEEFREAAK 126 (242)
T ss_pred HhCHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHH
Confidence 1 2367789999999996654 2343344444443
No 250
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=87.64 E-value=5 Score=39.20 Aligned_cols=92 Identities=16% Similarity=0.141 Sum_probs=61.7
Q ss_pred CCcEEEeecCCC-CC--C----hHHHHHHHHcCcccccccccchHHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCceEEE
Q 017200 207 PNMLIEALVPDF-RG--N----NGCVREVAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKT 279 (375)
Q Consensus 207 p~i~Ie~l~pd~-~g--~----~e~l~~L~~aGldv~~hnlEtv~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~tkt 279 (375)
.++..-.++|-- .| | ...++.+.+.|+|.+-.+=.|.+- ..-+.+++.++++.+.+.... +.
T Consensus 7 ~Gi~~a~vTPf~~dg~iD~~~l~~li~~l~~~Gv~gi~v~GstGE~-------~~Lt~eEr~~v~~~~~~~~~g----~~ 75 (296)
T TIGR03249 7 SGLLSFPVTPFDADGSFDEAAYRENIEWLLGYGLEALFAAGGTGEF-------FSLTPAEYEQVVEIAVSTAKG----KV 75 (296)
T ss_pred CceEEeeeCCcCCCCCcCHHHHHHHHHHHHhcCCCEEEECCCCcCc-------ccCCHHHHHHHHHHHHHHhCC----CC
Confidence 455566666621 11 2 456677778888865332222221 245678999999988885432 45
Q ss_pred eEEEecCCCHHHHHHHHHHHHHcCCcEEee
Q 017200 280 SIMLGCGETPDQVVSTMEKVRAAGVDVMTF 309 (375)
Q Consensus 280 ~imvGlGET~ee~~etl~~Lrelgvd~v~i 309 (375)
.+|+|.|.+-+|.++..+..+++|+|.+-+
T Consensus 76 pvi~gv~~~t~~ai~~a~~a~~~Gadav~~ 105 (296)
T TIGR03249 76 PVYTGVGGNTSDAIEIARLAEKAGADGYLL 105 (296)
T ss_pred cEEEecCccHHHHHHHHHHHHHhCCCEEEE
Confidence 688888778889999999999999987655
No 251
>PRK11613 folP dihydropteroate synthase; Provisional
Probab=87.52 E-value=13 Score=36.46 Aligned_cols=139 Identities=12% Similarity=0.127 Sum_probs=79.1
Q ss_pred CCCcchHHHHHHHHHhcCCcEEEEEee-eCCCCCcc----cHHHHHHHHHHHHHhCCCcEEEeecCCCCCChHHHHHHHH
Q 017200 156 PPDPDEPTNVAEAIASWGLDYVVITSV-DRDDLADQ----GSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAK 230 (375)
Q Consensus 156 ~ld~eEi~~~a~al~~~G~~eIvLTsg-dr~dl~d~----G~~~~~~lir~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~ 230 (375)
..+++++++.|+++.+.|.+-|-|=|. .++....- -.+.+..+|+.|++.. ++.| ++-.+ +.+.++.-.+
T Consensus 34 ~~~~~~a~~~a~~~~~~GAdIIDIGgeSTrPg~~~v~~eeE~~Rv~pvI~~l~~~~-~~~I--SIDT~--~~~va~~AL~ 108 (282)
T PRK11613 34 HNSLIDAVKHANLMINAGATIIDVGGESTRPGAAEVSVEEELDRVIPVVEAIAQRF-EVWI--SVDTS--KPEVIRESAK 108 (282)
T ss_pred CCCHHHHHHHHHHHHHCCCcEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcC-CCeE--EEECC--CHHHHHHHHH
Confidence 368999999999999999998887665 34443211 1234556777777543 3333 22223 5677787778
Q ss_pred cCccccccc--ccchHHHHHHh----------cCC--------CCCH--------HHHHHHHHHHHHhCCCCc---eEEE
Q 017200 231 SGLNVFAHN--IETVEELQSAV----------RDH--------RANF--------KQSLDVLMMAKDYVPAGT---LTKT 279 (375)
Q Consensus 231 aGldv~~hn--lEtv~rl~~~m----------r~r--------~~s~--------~~~l~vl~~ak~~~p~Gl---~tkt 279 (375)
+|+|.+|-- +. .+++++.+ +.+ ...| +..-+.++.+.+ .|+ .+--
T Consensus 109 ~GadiINDI~g~~-d~~~~~~~a~~~~~vVlmh~~g~p~~~~~~~~y~dv~~~v~~~l~~~i~~a~~---~GI~~~~Iil 184 (282)
T PRK11613 109 AGAHIINDIRSLS-EPGALEAAAETGLPVCLMHMQGNPKTMQEAPKYDDVFAEVNRYFIEQIARCEA---AGIAKEKLLL 184 (282)
T ss_pred cCCCEEEECCCCC-CHHHHHHHHHcCCCEEEEcCCCCCCccccCCCcccHHHHHHHHHHHHHHHHHH---cCCChhhEEE
Confidence 888877321 11 12222211 100 1111 122344455555 465 3344
Q ss_pred eEEEecCCCHHHHHHHHHHHHHcC
Q 017200 280 SIMLGCGETPDQVVSTMEKVRAAG 303 (375)
Q Consensus 280 ~imvGlGET~ee~~etl~~Lrelg 303 (375)
+--+|||.|.++=++.|+.+..+.
T Consensus 185 DPGiGF~k~~~~n~~ll~~l~~l~ 208 (282)
T PRK11613 185 DPGFGFGKNLSHNYQLLARLAEFH 208 (282)
T ss_pred eCCCCcCCCHHHHHHHHHHHHHHH
Confidence 444699999988777777665543
No 252
>PRK02227 hypothetical protein; Provisional
Probab=87.45 E-value=9.2 Score=36.70 Aligned_cols=162 Identities=18% Similarity=0.223 Sum_probs=98.4
Q ss_pred CCCCCCcchHHHHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCCCc-EEEeecCCCC-----CChHHHH
Q 017200 153 APPPPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNM-LIEALVPDFR-----GNNGCVR 226 (375)
Q Consensus 153 ~~~~ld~eEi~~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p~i-~Ie~l~pd~~-----g~~e~l~ 226 (375)
+..+..+.++...+..+...|++||-+==-.-.+. +.-.+.+..+++.++...++. .|-++..|+. ...+.++
T Consensus 60 GD~p~~p~~~~~aa~~~a~~GvDyVKvGl~~~~~~-~~~~~~~~~v~~a~~~~~~~~~vVav~yaD~~r~~~~~~~~l~~ 138 (238)
T PRK02227 60 GDVPYKPGTISLAALGAAATGADYVKVGLYGGKTA-EEAVEVMKAVVRAVKDLDPGKIVVAAGYADAHRVGSVSPLSLPA 138 (238)
T ss_pred cCCCCCchHHHHHHHHHHhhCCCEEEEcCCCCCcH-HHHHHHHHHHHHhhhhcCCCCeEEEEEecccccccCCChHHHHH
Confidence 34566778899999999999999997531111111 001233444456666555554 4555666643 2356777
Q ss_pred HHHHcCcccccccccchH----HHHHHhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEec-CCCHHHHHHHHHHHHH
Q 017200 227 EVAKSGLNVFAHNIETVE----ELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGC-GETPDQVVSTMEKVRA 301 (375)
Q Consensus 227 ~L~~aGldv~~hnlEtv~----rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~tkt~imvGl-GET~ee~~etl~~Lre 301 (375)
..+++|.+.. .++|.. .+|..| +.++--+.++.+|+ .| +|.|| |-= ..+.+..|+.
T Consensus 139 ~a~~aGf~g~--MlDTa~Kdg~~Lfd~l-----~~~~L~~Fv~~ar~---~G------l~~gLAGSL---~~~dip~L~~ 199 (238)
T PRK02227 139 IAADAGFDGA--MLDTAIKDGKSLFDHM-----DEEELAEFVAEARS---HG------LMSALAGSL---KFEDIPALKR 199 (238)
T ss_pred HHHHcCCCEE--EEecccCCCcchHhhC-----CHHHHHHHHHHHHH---cc------cHhHhcccC---chhhHHHHHh
Confidence 8888986643 467753 566554 46777777888887 44 56677 532 3456777899
Q ss_pred cCCcEEeeecCCCCCCCCCCccccCCHHHHHHHHHH
Q 017200 302 AGVDVMTFGQYMRPSKRHMPVSEYITPEAFERYRAL 337 (375)
Q Consensus 302 lgvd~v~i~qYl~P~~~~~~v~~~v~pe~~~~l~~~ 337 (375)
+++|++.|---+--... -...+.|+....|++.
T Consensus 200 l~pD~lGfRgavC~g~d---R~~~id~~~V~~~~~~ 232 (238)
T PRK02227 200 LGPDILGVRGAVCGGGD---RTGRIDPELVAELREA 232 (238)
T ss_pred cCCCEEEechhccCCCC---cccccCHHHHHHHHHH
Confidence 99999998422221111 1123568887777654
No 253
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=87.44 E-value=12 Score=36.54 Aligned_cols=115 Identities=15% Similarity=0.214 Sum_probs=63.7
Q ss_pred CCcccHHHHHHHHHHHHHhCCC-cEEEeecCCCCCChHHHHHHHHcC--cccccccccchHHHHHHhcC--CCCCHHHHH
Q 017200 187 LADQGSGHFAQTVRKLKELKPN-MLIEALVPDFRGNNGCVREVAKSG--LNVFAHNIETVEELQSAVRD--HRANFKQSL 261 (375)
Q Consensus 187 l~d~G~~~~~~lir~Ik~~~p~-i~Ie~l~pd~~g~~e~l~~L~~aG--ldv~~hnlEtv~rl~~~mr~--r~~s~~~~l 261 (375)
+...|.+.+.+.++..+...+. +.+.+.-.+...-.+..+.+.+++ .|.+..|+-.-.. +. ++ -..+.+...
T Consensus 70 l~~~g~~~~~~~~~~~~~~~~~pl~~qi~g~~~~~~~~~a~~~~~~~~~~d~ielN~~cP~~--~~-~g~~l~~~~~~~~ 146 (300)
T TIGR01037 70 LQNPGVEAFLEELKPVREEFPTPLIASVYGSSVEEFAEVAEKLEKAPPYVDAYELNLSCPHV--KG-GGIAIGQDPELSA 146 (300)
T ss_pred CCCcCHHHHHHHHHHHhccCCCcEEEEeecCCHHHHHHHHHHHHhccCccCEEEEECCCCCC--CC-CccccccCHHHHH
Confidence 3333566777766655444321 233322111100134456666653 7877777543221 00 10 124567888
Q ss_pred HHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcCCcEEeee
Q 017200 262 DVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFG 310 (375)
Q Consensus 262 ~vl~~ak~~~p~Gl~tkt~imvGlGET~ee~~etl~~Lrelgvd~v~i~ 310 (375)
++++.+++....-+.+|. .-+.+|..+..+.+.+.|+|.+++.
T Consensus 147 eiv~~vr~~~~~pv~vKi------~~~~~~~~~~a~~l~~~G~d~i~v~ 189 (300)
T TIGR01037 147 DVVKAVKDKTDVPVFAKL------SPNVTDITEIAKAAEEAGADGLTLI 189 (300)
T ss_pred HHHHHHHHhcCCCEEEEC------CCChhhHHHHHHHHHHcCCCEEEEE
Confidence 889998885311122332 2356788899999999999999875
No 254
>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF). The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl
Probab=87.43 E-value=8.2 Score=36.47 Aligned_cols=128 Identities=15% Similarity=0.074 Sum_probs=72.6
Q ss_pred cchHHHHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCCCcEEEeecCCCCCChHHHHHHHHcCcccccc
Q 017200 159 PDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAH 238 (375)
Q Consensus 159 ~eEi~~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGldv~~h 238 (375)
..+|++.|+.+.+.|+++++|.=-+.. . |...-.++|+.|.+..+ +.+.+- +.. .+.|.++.+.++|.+.+-.
T Consensus 34 ~~dp~~~a~~~~~~g~~~l~i~DLd~~--~--~~~~n~~~i~~i~~~~~-~~v~vg-GGi-r~~edv~~~l~~Ga~~vii 106 (233)
T cd04723 34 TSDPLDVARAYKELGFRGLYIADLDAI--M--GRGDNDEAIRELAAAWP-LGLWVD-GGI-RSLENAQEWLKRGASRVIV 106 (233)
T ss_pred CCCHHHHHHHHHHCCCCEEEEEeCccc--c--CCCccHHHHHHHHHhCC-CCEEEe-cCc-CCHHHHHHHHHcCCCeEEE
Confidence 458999999999999999998844321 1 22234677888876532 333321 222 2678999999999887655
Q ss_pred cccchHHHHHHhcCCCCCHHHHHHHHHHHHHhCCC-CceEEEeEEEec---CCCHHHHHHHHHHHHHcCCcEEeee
Q 017200 239 NIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPA-GTLTKTSIMLGC---GETPDQVVSTMEKVRAAGVDVMTFG 310 (375)
Q Consensus 239 nlEtv~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~-Gl~tkt~imvGl---GET~ee~~etl~~Lrelgvd~v~i~ 310 (375)
+-++.+ . +.++.+-+.++. -+.+.-++-=|- -++..+..+.++.+.+. ++.+.+.
T Consensus 107 gt~~~~--------------~--~~~~~~~~~~~~~~iivslD~~~~~~~~~~~~~~~~~~~~~~~~~-~~~li~~ 165 (233)
T cd04723 107 GTETLP--------------S--DDDEDRLAALGEQRLVLSLDFRGGQLLKPTDFIGPEELLRRLAKW-PEELIVL 165 (233)
T ss_pred cceecc--------------c--hHHHHHHHhcCCCCeEEEEeccCCeeccccCcCCHHHHHHHHHHh-CCeEEEE
Confidence 433322 1 233333333322 123333332120 12444566666666777 7766664
No 255
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=87.37 E-value=6.6 Score=41.38 Aligned_cols=133 Identities=17% Similarity=0.349 Sum_probs=85.3
Q ss_pred chHHHHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCCCcEEEeecCCCCCChHHHHHHHHcCccccccc
Q 017200 160 DEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHN 239 (375)
Q Consensus 160 eEi~~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGldv~~hn 239 (375)
+++.+.++++.+.|++-|+|-.-++. .....++|+.||+.+|++.| +-++.. +.|..+.+.++|.|.+..+
T Consensus 226 ~~~~~~a~~Lv~aGvd~i~~D~a~~~------~~~~~~~i~~ik~~~p~~~v--~agnv~-t~~~a~~l~~aGad~v~vg 296 (479)
T PRK07807 226 GDVAAKARALLEAGVDVLVVDTAHGH------QEKMLEALRAVRALDPGVPI--VAGNVV-TAEGTRDLVEAGADIVKVG 296 (479)
T ss_pred hhHHHHHHHHHHhCCCEEEEeccCCc------cHHHHHHHHHHHHHCCCCeE--EeeccC-CHHHHHHHHHcCCCEEEEC
Confidence 56788999999999999988655543 35689999999999998655 333432 6788999999999998755
Q ss_pred ccc----hHHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcCCcEEeeecCC
Q 017200 240 IET----VEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQYM 313 (375)
Q Consensus 240 lEt----v~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~tkt~imvGlGET~ee~~etl~~Lrelgvd~v~i~qYl 313 (375)
+=+ .-+.+--+. ...+.-..++.+.+++ .|+++ |.=|---+..|+...|. +|.+.+-+|..|
T Consensus 297 ig~gsictt~~~~~~~--~p~~~av~~~~~~~~~---~~~~v---ia~ggi~~~~~~~~al~----~ga~~v~~g~~~ 362 (479)
T PRK07807 297 VGPGAMCTTRMMTGVG--RPQFSAVLECAAAARE---LGAHV---WADGGVRHPRDVALALA----AGASNVMIGSWF 362 (479)
T ss_pred ccCCcccccccccCCc--hhHHHHHHHHHHHHHh---cCCcE---EecCCCCCHHHHHHHHH----cCCCeeeccHhh
Confidence 432 112222222 1223333444444444 23332 22233467788877764 688888787665
No 256
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed
Probab=87.37 E-value=17 Score=36.22 Aligned_cols=162 Identities=18% Similarity=0.195 Sum_probs=84.7
Q ss_pred ccHHHHHHHHHHHHHhCCCcEEEeec-C-CCCCChHHHHHHHHcCcccccccccchHHHHHHhcCCCCCH-HHHHHHHHH
Q 017200 190 QGSGHFAQTVRKLKELKPNMLIEALV-P-DFRGNNGCVREVAKSGLNVFAHNIETVEELQSAVRDHRANF-KQSLDVLMM 266 (375)
Q Consensus 190 ~G~~~~~~lir~Ik~~~p~i~Ie~l~-p-d~~g~~e~l~~L~~aGldv~~hnlEtv~rl~~~mr~r~~s~-~~~l~vl~~ 266 (375)
.|.+.+.+.++.+++.. ++.|-+.+ + +...-.+.++.+.++|.|.+..|+-..+. ....+ +... +.++++++.
T Consensus 84 ~g~d~~~~~i~~~~~~~-~~pvi~sI~g~~~~e~~~~a~~~~~agad~ielN~scpp~-~~~~~--g~~~~~~~~eil~~ 159 (334)
T PRK07565 84 VGPEEYLELIRRAKEAV-DIPVIASLNGSSAGGWVDYARQIEQAGADALELNIYYLPT-DPDIS--GAEVEQRYLDILRA 159 (334)
T ss_pred cCHHHHHHHHHHHHHhc-CCcEEEEeccCCHHHHHHHHHHHHHcCCCEEEEeCCCCCC-CCCCc--cccHHHHHHHHHHH
Confidence 46788888888887654 23332222 1 11001356677788899988887643220 01111 2223 346788888
Q ss_pred HHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcCCcEEeeecCC-CCCC---CCCCccc------cCCHHHHHHHHH
Q 017200 267 AKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQYM-RPSK---RHMPVSE------YITPEAFERYRA 336 (375)
Q Consensus 267 ak~~~p~Gl~tkt~imvGlGET~ee~~etl~~Lrelgvd~v~i~qYl-~P~~---~~~~v~~------~v~pe~~~~l~~ 336 (375)
+++....=+.+|-+. ...++.+..+.|.+.|+|.|.+.+=+ .+.. ...++.. .+.|...+...+
T Consensus 160 v~~~~~iPV~vKl~p------~~~~~~~~a~~l~~~G~dgI~~~n~~~~~~~d~~~~~~~~~~glsg~~~~~~al~~v~~ 233 (334)
T PRK07565 160 VKSAVSIPVAVKLSP------YFSNLANMAKRLDAAGADGLVLFNRFYQPDIDLETLEVVPGLVLSTPAELRLPLRWIAI 233 (334)
T ss_pred HHhccCCcEEEEeCC------CchhHHHHHHHHHHcCCCeEEEECCcCCCCcChhhcccccCCCCCCchhhhHHHHHHHH
Confidence 887431102334221 22367788888999999988875332 1100 0001101 123334455555
Q ss_pred HHHHhhhhhhccchhhhhhcchhHHH
Q 017200 337 LGMEMGFRYVASGPMVRSSYKVVGWC 362 (375)
Q Consensus 337 ~a~~~gf~~~~sgp~vrssy~a~~~~ 362 (375)
+.....+...++| -++|...|-|++
T Consensus 234 ~~~~~~ipIig~G-GI~s~~Da~e~l 258 (334)
T PRK07565 234 LSGRVGADLAATT-GVHDAEDVIKML 258 (334)
T ss_pred HHhhcCCCEEEEC-CCCCHHHHHHHH
Confidence 5555566666666 566655554443
No 257
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=87.18 E-value=9.7 Score=36.71 Aligned_cols=141 Identities=18% Similarity=0.261 Sum_probs=81.1
Q ss_pred CCcchHHHHHHHHHhcCCcEEEEEeeeCCCCCcc-------------c--HHHHHHHHHHHHHhCCCcEEEe---ecCCC
Q 017200 157 PDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQ-------------G--SGHFAQTVRKLKELKPNMLIEA---LVPDF 218 (375)
Q Consensus 157 ld~eEi~~~a~al~~~G~~eIvLTsgdr~dl~d~-------------G--~~~~~~lir~Ik~~~p~i~Ie~---l~pd~ 218 (375)
.|.+.-.+.++++.+.|++-|-|----.|-+.|| | .+.+.+++++|++..+++.+-. .-|-+
T Consensus 21 P~~~~~~~~~~~l~~~Gad~iElGiPfsDP~aDGpvIq~a~~~al~~G~~~~~~~~~v~~ir~~~~~~plv~m~Y~Npi~ 100 (256)
T TIGR00262 21 PTLETSLEIIKTLIEAGADALELGVPFSDPLADGPTIQAADLRALRAGMTPEKCFELLKKVRQKHPNIPIGLLTYYNLIF 100 (256)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEECCCCCCCCCcCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCEEEEEeccHHh
Confidence 3678888999999999998887654433333443 1 3567788888886533333222 22322
Q ss_pred C-CChHHHHHHHHcCccccccc---ccchHHHHHHhcCC---------CCCHHHHHHHHHHHHHhCCCCceEEEeEEEec
Q 017200 219 R-GNNGCVREVAKSGLNVFAHN---IETVEELQSAVRDH---------RANFKQSLDVLMMAKDYVPAGTLTKTSIMLGC 285 (375)
Q Consensus 219 ~-g~~e~l~~L~~aGldv~~hn---lEtv~rl~~~mr~r---------~~s~~~~l~vl~~ak~~~p~Gl~tkt~imvGl 285 (375)
. |..+.++.++++|+|.+-.. .|...++.+.++.. ..+..++++.+... . .|+.-..+.+ |.
T Consensus 101 ~~G~e~f~~~~~~aGvdgviipDlp~ee~~~~~~~~~~~gl~~i~lv~P~T~~eri~~i~~~---~-~gfiy~vs~~-G~ 175 (256)
T TIGR00262 101 RKGVEEFYAKCKEVGVDGVLVADLPLEESGDLVEAAKKHGVKPIFLVAPNADDERLKQIAEK---S-QGFVYLVSRA-GV 175 (256)
T ss_pred hhhHHHHHHHHHHcCCCEEEECCCChHHHHHHHHHHHHCCCcEEEEECCCCCHHHHHHHHHh---C-CCCEEEEECC-CC
Confidence 1 33667899999999975443 23344555544321 11222333222222 2 2454443444 88
Q ss_pred -CCC---HHHHHHHHHHHHHc
Q 017200 286 -GET---PDQVVSTMEKVRAA 302 (375)
Q Consensus 286 -GET---~ee~~etl~~Lrel 302 (375)
|+. ..++.+.++.+|+.
T Consensus 176 TG~~~~~~~~~~~~i~~lr~~ 196 (256)
T TIGR00262 176 TGARNRAASALNELVKRLKAY 196 (256)
T ss_pred CCCcccCChhHHHHHHHHHhh
Confidence 763 46677888888875
No 258
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=87.11 E-value=22 Score=32.84 Aligned_cols=121 Identities=14% Similarity=0.244 Sum_probs=72.3
Q ss_pred CCcchHHHHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCCCcEEEeecCCCCCChHHHHHHHHcCcccc
Q 017200 157 PDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVF 236 (375)
Q Consensus 157 ld~eEi~~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGldv~ 236 (375)
.+.+++.+.|++..+.|.+-+++..-+. ...+. .+.++.|++.. ++.| +..++.-+.+.++.+.++|.|.+
T Consensus 28 ~~~~~~~~~A~~~~~~GA~~l~v~~~~~--~~~g~----~~~~~~i~~~v-~iPi--~~~~~i~~~~~v~~~~~~Gad~v 98 (217)
T cd00331 28 REDFDPVEIAKAYEKAGAAAISVLTEPK--YFQGS----LEDLRAVREAV-SLPV--LRKDFIIDPYQIYEARAAGADAV 98 (217)
T ss_pred CCCCCHHHHHHHHHHcCCCEEEEEeCcc--ccCCC----HHHHHHHHHhc-CCCE--EECCeecCHHHHHHHHHcCCCEE
Confidence 5778999999999999999997763221 11111 24566666542 3333 33455446778999999999988
Q ss_pred cccccchHHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcCCcEEeee
Q 017200 237 AHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFG 310 (375)
Q Consensus 237 ~hnlEtv~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~tkt~imvGlGET~ee~~etl~~Lrelgvd~v~i~ 310 (375)
..+... ...+...+.++.++. .|+.+ |+.+ -+++| ++.+.+.+++++.++
T Consensus 99 ~l~~~~------------~~~~~~~~~~~~~~~---~g~~~----~v~v-~~~~e----~~~~~~~g~~~i~~t 148 (217)
T cd00331 99 LLIVAA------------LDDEQLKELYELARE---LGMEV----LVEV-HDEEE----LERALALGAKIIGIN 148 (217)
T ss_pred EEeecc------------CCHHHHHHHHHHHHH---cCCeE----EEEE-CCHHH----HHHHHHcCCCEEEEe
Confidence 654211 112333344455555 24433 4444 25655 444556788888765
No 259
>KOG2535 consensus RNA polymerase II elongator complex, subunit ELP3/histone acetyltransferase [Chromatin structure and dynamics; Transcription]
Probab=86.81 E-value=11 Score=38.32 Aligned_cols=120 Identities=16% Similarity=0.190 Sum_probs=75.9
Q ss_pred chHHHHHHHHHhcCC----cEEEEEeeeCCCCCcccHHHHHHHH-------------HHHHH------hCCCcEEEeecC
Q 017200 160 DEPTNVAEAIASWGL----DYVVITSVDRDDLADQGSGHFAQTV-------------RKLKE------LKPNMLIEALVP 216 (375)
Q Consensus 160 eEi~~~a~al~~~G~----~eIvLTsgdr~dl~d~G~~~~~~li-------------r~Ik~------~~p~i~Ie~l~p 216 (375)
++....+++++.+|- -+.++.||.--.||..-.++|..-+ ++++- +.-++.|+ --|
T Consensus 153 ~QaR~Rv~QLk~LGHsvDKVE~i~MGGTFMsLPe~YRd~FI~nLHdALSGhts~~v~EAv~yse~s~tKCiGiTIE-TRP 231 (554)
T KOG2535|consen 153 LQARGRVEQLKQLGHSVDKVEFIVMGGTFMSLPEEYRDYFIRNLHDALSGHTSANVEEAVKYSERSLTKCIGITIE-TRP 231 (554)
T ss_pred HHHHHHHHHHHHhCCccceeEEEEecceeecChHHHHHHHHHHHHHHhcCCCccCHHHHHHhhhhccceeeeEEee-cCc
Confidence 444556788888884 3566677764445432122222111 11211 01123333 235
Q ss_pred CCCCChHHHHHHHHcCcccccccccch-HHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEec
Q 017200 217 DFRGNNGCVREVAKSGLNVFAHNIETV-EELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGC 285 (375)
Q Consensus 217 d~~g~~e~l~~L~~aGldv~~hnlEtv-~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~tkt~imvGl 285 (375)
|+- ....|..+...|...+.++++.+ +.+-+.-+ |+++.....+....+|+ .|..+-++||=-|
T Consensus 232 DyC-~~~Hl~~ML~YGCTRlEiGVQS~YEDVARDTN-RGHTV~aVce~F~laKD---aG~KvV~HMMPdL 296 (554)
T KOG2535|consen 232 DYC-LKRHLSDMLTYGCTRLEIGVQSVYEDVARDTN-RGHTVKAVCESFHLAKD---AGFKVVAHMMPDL 296 (554)
T ss_pred ccc-hhhhHHHHHhcCCceEEeccchhHHHhhhccc-CCccHHHHHHHhhhhhc---cCceeehhhCCCC
Confidence 654 35678888889999888887654 56655555 89999999999999998 6899999999555
No 260
>cd00384 ALAD_PBGS Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. They either contain a cysteine-rich zinc binding site (consensus DXCXCX(Y/F)X3G(H/Q)CG) or an aspartate-rich magnesium binding site (consensus DXALDX(Y/F)X3G(H/Q)DG). The cyste
Probab=86.80 E-value=7.7 Score=38.57 Aligned_cols=53 Identities=25% Similarity=0.481 Sum_probs=42.0
Q ss_pred CCcchHHHHHHHHHhcCCcEEEEEeeeCCCCCcc-c------HHHHHHHHHHHHHhCCCcEE
Q 017200 157 PDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQ-G------SGHFAQTVRKLKELKPNMLI 211 (375)
Q Consensus 157 ld~eEi~~~a~al~~~G~~eIvLTsgdr~dl~d~-G------~~~~~~lir~Ik~~~p~i~I 211 (375)
++.+++++.++.+.++|++-|.|=|+. +..|. | -.-+...|+.||+.+|++.|
T Consensus 48 ~s~d~l~~~~~~~~~~Gi~~v~LFgv~--~~Kd~~gs~A~~~~g~v~~air~iK~~~p~l~v 107 (314)
T cd00384 48 LSVDSLVEEAEELADLGIRAVILFGIP--EHKDEIGSEAYDPDGIVQRAIRAIKEAVPELVV 107 (314)
T ss_pred eCHHHHHHHHHHHHHCCCCEEEEECCC--CCCCCCcccccCCCChHHHHHHHHHHhCCCcEE
Confidence 789999999999999999999999983 22221 1 12367899999999998765
No 261
>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=86.79 E-value=18 Score=32.78 Aligned_cols=113 Identities=19% Similarity=0.203 Sum_probs=61.8
Q ss_pred chHHHHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCCCcEEEeecCCCCCChHHHHHHHHcCccccccc
Q 017200 160 DEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHN 239 (375)
Q Consensus 160 eEi~~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGldv~~hn 239 (375)
++..+.++.+.+.|++.|+|.-.+ .. ...+...++.+++......+.+++. +.++.+.++|+|.+...
T Consensus 21 ~~~~~~~~~~~~~gv~~v~lr~~~---~~---~~~~~~~~~~~~~~~~~~~~~l~~~------~~~~~a~~~gad~vh~~ 88 (212)
T PRK00043 21 RDLLEVVEAALEGGVTLVQLREKG---LD---TRERLELARALKELCRRYGVPLIVN------DRVDLALAVGADGVHLG 88 (212)
T ss_pred ccHHHHHHHHHhcCCCEEEEeCCC---CC---HHHHHHHHHHHHHHHHHhCCeEEEe------ChHHHHHHcCCCEEecC
Confidence 457777888889999999876332 22 2335556666654321122223332 35788888999876442
Q ss_pred ccchHHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEec-CCCHHHHHHHHHHHHHcCCcEEeeecCC
Q 017200 240 IETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGC-GETPDQVVSTMEKVRAAGVDVMTFGQYM 313 (375)
Q Consensus 240 lEtv~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~tkt~imvGl-GET~ee~~etl~~Lrelgvd~v~i~qYl 313 (375)
.+..+ ...++..+. .|. ++|. --|.+|..+.. +.|+|+|.++.++
T Consensus 89 ~~~~~----------------~~~~~~~~~---~~~------~~g~~~~t~~e~~~a~----~~gaD~v~~~~~~ 134 (212)
T PRK00043 89 QDDLP----------------VADARALLG---PDA------IIGLSTHTLEEAAAAL----AAGADYVGVGPIF 134 (212)
T ss_pred cccCC----------------HHHHHHHcC---CCC------EEEEeCCCHHHHHHHh----HcCCCEEEECCcc
Confidence 22100 111122211 222 3344 34777665443 6799999987665
No 262
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=86.76 E-value=17 Score=34.56 Aligned_cols=130 Identities=11% Similarity=0.076 Sum_probs=77.4
Q ss_pred chHHHHHHHHHh-cCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCCCcEEEeecCCCCCChHHHHHHHHcCcccccc
Q 017200 160 DEPTNVAEAIAS-WGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAH 238 (375)
Q Consensus 160 eEi~~~a~al~~-~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGldv~~h 238 (375)
.+|++.|+...+ .|+++++|.=-+.. . .|...-.++|++|.+. ..+.|. .+.-..+.|.++.+.++|++.+-.
T Consensus 31 ~dp~~~a~~~~~~~Ga~~l~ivDLd~a--~-~~~~~n~~~I~~i~~~-~~~pi~--vGGGIrs~e~v~~~l~~Ga~kvvi 104 (234)
T PRK13587 31 RSAEESIAYYSQFECVNRIHIVDLIGA--K-AQHAREFDYIKSLRRL-TTKDIE--VGGGIRTKSQIMDYFAAGINYCIV 104 (234)
T ss_pred CCHHHHHHHHHhccCCCEEEEEECccc--c-cCCcchHHHHHHHHhh-cCCeEE--EcCCcCCHHHHHHHHHCCCCEEEE
Confidence 467778998888 69999998843321 1 1223356788888763 334443 322222789999999999998766
Q ss_pred cccchHHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEE----EecC---CCHHHHHHHHHHHHHcCCcEEeee
Q 017200 239 NIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIM----LGCG---ETPDQVVSTMEKVRAAGVDVMTFG 310 (375)
Q Consensus 239 nlEtv~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~tkt~im----vGlG---ET~ee~~etl~~Lrelgvd~v~i~ 310 (375)
+-++.+ ..+.++.+.+.+|..+.+.-+.- +-.| ++.-+..+.++.+.++++..+-+.
T Consensus 105 gt~a~~---------------~~~~l~~~~~~fg~~ivvslD~~~g~v~~~gw~~~~~~~~~~~~~~~~~~g~~~ii~t 168 (234)
T PRK13587 105 GTKGIQ---------------DTDWLKEMAHTFPGRIYLSVDAYGEDIKVNGWEEDTELNLFSFVRQLSDIPLGGIIYT 168 (234)
T ss_pred CchHhc---------------CHHHHHHHHHHcCCCEEEEEEeeCCEEEecCCcccCCCCHHHHHHHHHHcCCCEEEEe
Confidence 544321 12344444444443233333332 1112 455566788888888888766554
No 263
>PRK09722 allulose-6-phosphate 3-epimerase; Provisional
Probab=86.56 E-value=22 Score=33.92 Aligned_cols=116 Identities=19% Similarity=0.258 Sum_probs=73.1
Q ss_pred CCcchHHHHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhC--CCcEEEeecCCCCCChHHHHHHHHcCcc
Q 017200 157 PDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELK--PNMLIEALVPDFRGNNGCVREVAKSGLN 234 (375)
Q Consensus 157 ld~eEi~~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~--p~i~Ie~l~pd~~g~~e~l~~L~~aGld 234 (375)
.|+-.+.+.++.+.+ |++++++==.|..-.|...+. .++++.|++.. | +.+++.+-+ ....++.+.++|+|
T Consensus 12 ad~~~l~~el~~l~~-g~d~lH~DiMDG~FVPN~tfg--~~~i~~ir~~t~~~-~DvHLMv~~---P~~~i~~~~~aGad 84 (229)
T PRK09722 12 MDLLKFKEQIEFLNS-KADYFHIDIMDGHFVPNLTLS--PFFVSQVKKLASKP-LDVHLMVTD---PQDYIDQLADAGAD 84 (229)
T ss_pred cCHHHHHHHHHHHHh-CCCEEEEecccCccCCCcccC--HHHHHHHHhcCCCC-eEEEEEecC---HHHHHHHHHHcCCC
Confidence 455677788888877 999998866664444432111 45777787642 3 455555432 24578999999999
Q ss_pred cccccccchHHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHH
Q 017200 235 VFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTME 297 (375)
Q Consensus 235 v~~hnlEtv~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~tkt~imvGlGET~ee~~etl~ 297 (375)
.+....|+.+ ....++++.+|+ .| .++++-+.-+=..+.+...|.
T Consensus 85 ~it~H~Ea~~-------------~~~~~~i~~Ik~---~G--~kaGlalnP~T~~~~l~~~l~ 129 (229)
T PRK09722 85 FITLHPETIN-------------GQAFRLIDEIRR---AG--MKVGLVLNPETPVESIKYYIH 129 (229)
T ss_pred EEEECccCCc-------------chHHHHHHHHHH---cC--CCEEEEeCCCCCHHHHHHHHH
Confidence 9988888542 112356677777 46 477887777744444443443
No 264
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=86.55 E-value=3 Score=41.98 Aligned_cols=72 Identities=24% Similarity=0.294 Sum_probs=51.7
Q ss_pred cchHHHHHHHHHh--cCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCCCcEEEeecCCCCCChHHHHHHHHcCcccc
Q 017200 159 PDEPTNVAEAIAS--WGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVF 236 (375)
Q Consensus 159 ~eEi~~~a~al~~--~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGldv~ 236 (375)
+++. +.++++.+ .|++.|+|=.-+. -..++.++|+.||+.+|++.| .-++.. +.|..+.|.++|+|.+
T Consensus 107 ~~d~-er~~~L~~~~~g~D~iviD~AhG------hs~~~i~~ik~ik~~~P~~~v--IaGNV~-T~e~a~~Li~aGAD~v 176 (346)
T PRK05096 107 DADF-EKTKQILALSPALNFICIDVANG------YSEHFVQFVAKAREAWPDKTI--CAGNVV-TGEMVEELILSGADIV 176 (346)
T ss_pred HHHH-HHHHHHHhcCCCCCEEEEECCCC------cHHHHHHHHHHHHHhCCCCcE--EEeccc-CHHHHHHHHHcCCCEE
Confidence 3444 44556666 5999999765443 267899999999999998654 333332 6889999999999988
Q ss_pred cccc
Q 017200 237 AHNI 240 (375)
Q Consensus 237 ~hnl 240 (375)
-.++
T Consensus 177 KVGI 180 (346)
T PRK05096 177 KVGI 180 (346)
T ss_pred EEcc
Confidence 5443
No 265
>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]
Probab=86.15 E-value=2.4 Score=43.64 Aligned_cols=102 Identities=15% Similarity=0.177 Sum_probs=67.2
Q ss_pred chHHHHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCCCcEEEeecCCCCCChHHHHHHHHcCccccccc
Q 017200 160 DEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHN 239 (375)
Q Consensus 160 eEi~~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGldv~~hn 239 (375)
|+=....+.+++.|++.|+|-|-.. ...+..++|+.||+.+|++.|- -++.. ..++.+.|.++|+|.+..+
T Consensus 250 e~dK~rl~ll~~aGvdvviLDSSqG------nS~~qiemik~iK~~yP~l~Vi--aGNVV-T~~qa~nLI~aGaDgLrVG 320 (503)
T KOG2550|consen 250 DDDKERLDLLVQAGVDVVILDSSQG------NSIYQLEMIKYIKETYPDLQII--AGNVV-TKEQAANLIAAGADGLRVG 320 (503)
T ss_pred cchhHHHHHhhhcCCcEEEEecCCC------cchhHHHHHHHHHhhCCCceee--cccee-eHHHHHHHHHccCceeEec
Confidence 4444556678899999999876543 3678899999999999987663 22222 5789999999999987666
Q ss_pred ccc-hHHHHHHhc-CCCCCHHHHHHHHHHHHHh
Q 017200 240 IET-VEELQSAVR-DHRANFKQSLDVLMMAKDY 270 (375)
Q Consensus 240 lEt-v~rl~~~mr-~r~~s~~~~l~vl~~ak~~ 270 (375)
+=+ +--+.+.+. -.+.......++.+.|+..
T Consensus 321 MGsGSiCiTqevma~GrpQ~TAVy~va~~A~q~ 353 (503)
T KOG2550|consen 321 MGSGSICITQKVMACGRPQGTAVYKVAEFANQF 353 (503)
T ss_pred cccCceeeeceeeeccCCcccchhhHHHHHHhc
Confidence 431 111111111 1122334556778888874
No 266
>PRK14114 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=85.67 E-value=12 Score=35.77 Aligned_cols=162 Identities=14% Similarity=0.218 Sum_probs=90.9
Q ss_pred cchHHHHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCCCcEEEeecCCCCCChHHHHHHHHcCcccccc
Q 017200 159 PDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAH 238 (375)
Q Consensus 159 ~eEi~~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGldv~~h 238 (375)
..+|++.|+...+.|+++++|.=-+.. . .|...-.++|++|.+.. ..+ ..+.=..+.+.++.+.++|++.+-.
T Consensus 29 ~~dP~~~A~~~~~~ga~~lhivDLd~a-~--~g~~~n~~~i~~i~~~~--~~v--~vGGGIrs~e~~~~~l~~Ga~rvvi 101 (241)
T PRK14114 29 EKDPAELVEKLIEEGFTLIHVVDLSKA-I--ENSVENLPVLEKLSEFA--EHI--QIGGGIRSLDYAEKLRKLGYRRQIV 101 (241)
T ss_pred CCCHHHHHHHHHHCCCCEEEEEECCCc-c--cCCcchHHHHHHHHhhc--CcE--EEecCCCCHHHHHHHHHCCCCEEEE
Confidence 468999999999999999999844321 1 12333567888887653 222 2222122689999999999998766
Q ss_pred cccchH--HHHHHhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeE----EE--ec-CCCHHHHHHHHHHHHHcCCcEEee
Q 017200 239 NIETVE--ELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSI----ML--GC-GETPDQVVSTMEKVRAAGVDVMTF 309 (375)
Q Consensus 239 nlEtv~--rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~tkt~i----mv--Gl-GET~ee~~etl~~Lrelgvd~v~i 309 (375)
|-++++ ++.+.+ .+ ++..+.+.-++ ++ |. -.|.-+..+.++.+.++|+..+-+
T Consensus 102 gT~a~~~p~~l~~~-----------------~~-~~~~ivvslD~k~g~v~~~gw~~~~~~~~~e~~~~~~~~g~~~ii~ 163 (241)
T PRK14114 102 SSKVLEDPSFLKFL-----------------KE-IDVEPVFSLDTRGGKVAFKGWLAEEEIDPVSLLKRLKEYGLEEIVH 163 (241)
T ss_pred CchhhCCHHHHHHH-----------------HH-hCCCEEEEEEccCCEEeeCCCeecCCCCHHHHHHHHHhcCCCEEEE
Confidence 544321 333332 11 11112222221 11 11 236667888899999999987666
Q ss_pred ecCCCCCCCCCCccccCCHHHHHHHHHHHHHhhhhhhccchhhhh
Q 017200 310 GQYMRPSKRHMPVSEYITPEAFERYRALGMEMGFRYVASGPMVRS 354 (375)
Q Consensus 310 ~qYl~P~~~~~~v~~~v~pe~~~~l~~~a~~~gf~~~~sgp~vrs 354 (375)
..--+- ++. ..-.++.++.++........+|| -|||
T Consensus 164 tdI~rd---Gt~-----~G~d~el~~~l~~~~~~pviasG-Gv~s 199 (241)
T PRK14114 164 TEIEKD---GTL-----QEHDFSLTRKIAIEAEVKVFAAG-GISS 199 (241)
T ss_pred Eeechh---hcC-----CCcCHHHHHHHHHHCCCCEEEEC-CCCC
Confidence 322222 211 00124445555555555555666 4544
No 267
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=85.63 E-value=15 Score=36.10 Aligned_cols=52 Identities=15% Similarity=0.238 Sum_probs=37.1
Q ss_pred HHHHHHHHHhCCCCceEEEeEEEe----cCCCHHHHHHHHHHHHHcCCcEEeeecC
Q 017200 261 LDVLMMAKDYVPAGTLTKTSIMLG----CGETPDQVVSTMEKVRAAGVDVMTFGQY 312 (375)
Q Consensus 261 l~vl~~ak~~~p~Gl~tkt~imvG----lGET~ee~~etl~~Lrelgvd~v~i~qY 312 (375)
+++++.+++..+.++.+...+=.+ -|.|.+|.++.++.|.+.|+|++++...
T Consensus 195 ~eii~avr~~~g~d~~i~vris~~~~~~~g~~~~e~~~la~~l~~~G~d~i~vs~g 250 (327)
T cd02803 195 LEIVAAVREAVGPDFPVGVRLSADDFVPGGLTLEEAIEIAKALEEAGVDALHVSGG 250 (327)
T ss_pred HHHHHHHHHHcCCCceEEEEechhccCCCCCCHHHHHHHHHHHHHcCCCEEEeCCC
Confidence 688888888764434333322211 2568999999999999999999988643
No 268
>PRK05581 ribulose-phosphate 3-epimerase; Validated
Probab=85.61 E-value=29 Score=31.78 Aligned_cols=77 Identities=14% Similarity=0.249 Sum_probs=49.8
Q ss_pred CCcchHHHHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCC-CcEEEeecCCCCCChHHHHHHHHcCccc
Q 017200 157 PDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKP-NMLIEALVPDFRGNNGCVREVAKSGLNV 235 (375)
Q Consensus 157 ld~eEi~~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p-~i~Ie~l~pd~~g~~e~l~~L~~aGldv 235 (375)
.|+....+.++++.+.|++.|.|--.|....+. .....+.++.|++..+ .+.+.+++-+ ..+.++.+.++|+|.
T Consensus 13 ~~~~~~~~~~~~~~~~G~~~i~l~~~d~~~~~~--~~~~~~~~~~i~~~~~~~~~v~l~v~d---~~~~i~~~~~~g~d~ 87 (220)
T PRK05581 13 ADFARLGEEVKAVEAAGADWIHVDVMDGHFVPN--LTIGPPVVEAIRKVTKLPLDVHLMVEN---PDRYVPDFAKAGADI 87 (220)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEeCccCCcCCC--cCcCHHHHHHHHhcCCCcEEEEeeeCC---HHHHHHHHHHcCCCE
Confidence 566788899999999999999994222221221 1223567888887654 2345555533 244678888999998
Q ss_pred ccc
Q 017200 236 FAH 238 (375)
Q Consensus 236 ~~h 238 (375)
+..
T Consensus 88 v~v 90 (220)
T PRK05581 88 ITF 90 (220)
T ss_pred EEE
Confidence 543
No 269
>PLN02334 ribulose-phosphate 3-epimerase
Probab=85.53 E-value=5.3 Score=37.49 Aligned_cols=130 Identities=22% Similarity=0.308 Sum_probs=70.2
Q ss_pred CcchHHHHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCCC-cEEEeecCCCCCChHHHHHHHHcCcccc
Q 017200 158 DPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPN-MLIEALVPDFRGNNGCVREVAKSGLNVF 236 (375)
Q Consensus 158 d~eEi~~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p~-i~Ie~l~pd~~g~~e~l~~L~~aGldv~ 236 (375)
++..+.+.++++.+.|++.++|=--|....+...+. .++++.|++.... +.+.+++-+ ..+.++.+.++|.|.+
T Consensus 18 ~~~~l~~~l~~~~~~g~~~ihld~~d~~f~~~~~~g--~~~~~~l~~~~~~~~~vhlmv~~---p~d~~~~~~~~gad~v 92 (229)
T PLN02334 18 DFANLAEEAKRVLDAGADWLHVDVMDGHFVPNLTIG--PPVVKALRKHTDAPLDCHLMVTN---PEDYVPDFAKAGASIF 92 (229)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEecccCCcCCccccC--HHHHHHHHhcCCCcEEEEeccCC---HHHHHHHHHHcCCCEE
Confidence 445788899999999999999821111101110000 1677888765311 245545422 1456888899999988
Q ss_pred cccccchHHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEec---CCCHHHHHHHHHHHHHcC-CcEEeeecC
Q 017200 237 AHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGC---GETPDQVVSTMEKVRAAG-VDVMTFGQY 312 (375)
Q Consensus 237 ~hnlEtv~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~tkt~imvGl---GET~ee~~etl~~Lrelg-vd~v~i~qY 312 (375)
...+|. ..-+...+.++.+++ .|+ ++|+ -.|..+.++ .+.+.+ +|.+.++..
T Consensus 93 ~vH~~q------------~~~d~~~~~~~~i~~---~g~------~iGls~~~~t~~~~~~---~~~~~~~~Dyi~~~~v 148 (229)
T PLN02334 93 TFHIEQ------------ASTIHLHRLIQQIKS---AGM------KAGVVLNPGTPVEAVE---PVVEKGLVDMVLVMSV 148 (229)
T ss_pred EEeecc------------ccchhHHHHHHHHHH---CCC------eEEEEECCCCCHHHHH---HHHhccCCCEEEEEEE
Confidence 544441 001223455666665 343 3344 235555443 333453 888877644
Q ss_pred CCCCC
Q 017200 313 MRPSK 317 (375)
Q Consensus 313 l~P~~ 317 (375)
.|+.
T Consensus 149 -~pg~ 152 (229)
T PLN02334 149 -EPGF 152 (229)
T ss_pred -ecCC
Confidence 3543
No 270
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=85.51 E-value=7.4 Score=37.81 Aligned_cols=77 Identities=12% Similarity=0.130 Sum_probs=50.7
Q ss_pred hHHHHHHHHcCcccccccccchHHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEec-CCCHHHHHHHHHHHH
Q 017200 222 NGCVREVAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGC-GETPDQVVSTMEKVR 300 (375)
Q Consensus 222 ~e~l~~L~~aGldv~~hnlEtv~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~tkt~imvGl-GET~ee~~etl~~Lr 300 (375)
.+.++.+.+.|++.+-.+--+.+ . ..-+.+++.++++.+.+..+. +..+|+|. +.+-+|.++..+..+
T Consensus 25 ~~~i~~l~~~Gv~gi~~~Gs~GE-----~--~~ls~~Er~~~~~~~~~~~~~----~~~vi~gv~~~~~~~~i~~a~~a~ 93 (292)
T PRK03170 25 RKLVDYLIANGTDGLVVVGTTGE-----S--PTLTHEEHEELIRAVVEAVNG----RVPVIAGTGSNSTAEAIELTKFAE 93 (292)
T ss_pred HHHHHHHHHcCCCEEEECCcCCc-----c--ccCCHHHHHHHHHHHHHHhCC----CCcEEeecCCchHHHHHHHHHHHH
Confidence 44566677777776533222222 1 134678888888888775432 34578888 468888888888888
Q ss_pred HcCCcEEee
Q 017200 301 AAGVDVMTF 309 (375)
Q Consensus 301 elgvd~v~i 309 (375)
++|+|.+-+
T Consensus 94 ~~G~d~v~~ 102 (292)
T PRK03170 94 KAGADGALV 102 (292)
T ss_pred HcCCCEEEE
Confidence 888887665
No 271
>cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE). This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.
Probab=85.08 E-value=29 Score=31.33 Aligned_cols=77 Identities=14% Similarity=0.228 Sum_probs=48.5
Q ss_pred CCCcchHHHHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCC-CcEEEeecCCCCCChHHHHHHHHcCcc
Q 017200 156 PPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKP-NMLIEALVPDFRGNNGCVREVAKSGLN 234 (375)
Q Consensus 156 ~ld~eEi~~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p-~i~Ie~l~pd~~g~~e~l~~L~~aGld 234 (375)
.+|+.++.+.++++.+.|++.|.|--.+....+. ...-.+.++.|++..+ .+.+.+++-+ ..+.++.+.++|+|
T Consensus 8 ~~d~~~~~~~~~~~~~~G~~~i~l~~~d~~~~~~--~~~~~~~~~~i~~~~~~~~~v~l~~~d---~~~~~~~~~~~g~d 82 (211)
T cd00429 8 SADFANLGEELKRLEEAGADWIHIDVMDGHFVPN--LTFGPPVVKALRKHTDLPLDVHLMVEN---PERYIEAFAKAGAD 82 (211)
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEEecccCCCCCc--cccCHHHHHHHHhhCCCcEEEEeeeCC---HHHHHHHHHHcCCC
Confidence 3788889999999999999999884323221121 1111467778876542 2334444422 13468888899999
Q ss_pred ccc
Q 017200 235 VFA 237 (375)
Q Consensus 235 v~~ 237 (375)
.+.
T Consensus 83 gv~ 85 (211)
T cd00429 83 IIT 85 (211)
T ss_pred EEE
Confidence 863
No 272
>PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes. Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F ....
Probab=84.88 E-value=9.2 Score=36.03 Aligned_cols=168 Identities=17% Similarity=0.202 Sum_probs=95.7
Q ss_pred CCcchHHHHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCCCcEEEeecCCCCCChHHHHHHHHcCcccc
Q 017200 157 PDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVF 236 (375)
Q Consensus 157 ld~eEi~~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGldv~ 236 (375)
....+|++.|+.+.++|+++++|.=-|.- . .|...-.++|+.|.+..+ +.|.+= +.+. +.+.++.+.+.|++.+
T Consensus 26 ~~~~dP~~~a~~~~~~g~~~l~ivDLdaa--~-~g~~~n~~~i~~i~~~~~-~~i~vg-GGIr-s~ed~~~ll~~Ga~~V 99 (229)
T PF00977_consen 26 VYSGDPVEVAKAFNEQGADELHIVDLDAA--K-EGRGSNLELIKEIAKETG-IPIQVG-GGIR-SIEDAERLLDAGADRV 99 (229)
T ss_dssp CECCCHHHHHHHHHHTT-SEEEEEEHHHH--C-CTHHHHHHHHHHHHHHSS-SEEEEE-SSE--SHHHHHHHHHTT-SEE
T ss_pred EECcCHHHHHHHHHHcCCCEEEEEEccCc--c-cCchhHHHHHHHHHhcCC-ccEEEe-CccC-cHHHHHHHHHhCCCEE
Confidence 34568899999999999999999843321 1 133445688888888754 444432 1222 7889999999999876
Q ss_pred cccccchHHHHHHhcCCCCCHHHHHHHHHHHHHhCCC-CceEEEeEEEe-----cCC---CHHHHHHHHHHHHHcCCcEE
Q 017200 237 AHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPA-GTLTKTSIMLG-----CGE---TPDQVVSTMEKVRAAGVDVM 307 (375)
Q Consensus 237 ~hnlEtv~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~-Gl~tkt~imvG-----lGE---T~ee~~etl~~Lrelgvd~v 307 (375)
-.+-++.+ + .+.++.+.+.++. -+.+.-++.-| .|- |.-+..+.++.+.+.++..+
T Consensus 100 vigt~~~~-------~--------~~~l~~~~~~~g~~~ivvslD~~~g~~v~~~gw~~~~~~~~~~~~~~~~~~g~~~i 164 (229)
T PF00977_consen 100 VIGTEALE-------D--------PELLEELAERYGSQRIVVSLDARDGYKVATNGWQESSGIDLEEFAKRLEELGAGEI 164 (229)
T ss_dssp EESHHHHH-------C--------CHHHHHHHHHHGGGGEEEEEEEEETEEEEETTTTEEEEEEHHHHHHHHHHTT-SEE
T ss_pred EeChHHhh-------c--------hhHHHHHHHHcCcccEEEEEEeeeceEEEecCccccCCcCHHHHHHHHHhcCCcEE
Confidence 65533321 0 1222222222211 23334443333 232 34578888999999999887
Q ss_pred eeecCCCCCCCCCCccccCCHHHHHHHHHHHHHhhhhhhccchhhhh
Q 017200 308 TFGQYMRPSKRHMPVSEYITPEAFERYRALGMEMGFRYVASGPMVRS 354 (375)
Q Consensus 308 ~i~qYl~P~~~~~~v~~~v~pe~~~~l~~~a~~~gf~~~~sgp~vrs 354 (375)
-+..--+- ++. ..-.++.++.++........+|| -|||
T Consensus 165 i~tdi~~d---Gt~-----~G~d~~~~~~l~~~~~~~viasG-Gv~~ 202 (229)
T PF00977_consen 165 ILTDIDRD---GTM-----QGPDLELLKQLAEAVNIPVIASG-GVRS 202 (229)
T ss_dssp EEEETTTT---TTS-----SS--HHHHHHHHHHHSSEEEEES-S--S
T ss_pred EEeecccc---CCc-----CCCCHHHHHHHHHHcCCCEEEec-CCCC
Confidence 66322222 221 11125667777777777777888 5655
No 273
>TIGR00126 deoC deoxyribose-phosphate aldolase. Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria.
Probab=84.77 E-value=35 Score=32.05 Aligned_cols=174 Identities=17% Similarity=0.125 Sum_probs=108.9
Q ss_pred CCcchHHHHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCCCcEEEeecCCCCCC------hHHHHHHHH
Q 017200 157 PDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGN------NGCVREVAK 230 (375)
Q Consensus 157 ld~eEi~~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p~i~Ie~l~pd~~g~------~e~l~~L~~ 230 (375)
.+.+++.+.++...+.|+.-|++. | .|..+.+..-+ ..++.|.+.++.-.|. ...++...+
T Consensus 15 ~t~~~i~~lc~~A~~~~~~avcv~-------p-----~~v~~a~~~l~-~~~v~v~tVigFP~G~~~~~~K~~E~~~Av~ 81 (211)
T TIGR00126 15 TTEEDIITLCAQAKTYKFAAVCVN-------P-----SYVPLAKELLK-GTEVRICTVVGFPLGASTTDVKLYETKEAIK 81 (211)
T ss_pred CCHHHHHHHHHHHHhhCCcEEEeC-------H-----HHHHHHHHHcC-CCCCeEEEEeCCCCCCCcHHHHHHHHHHHHH
Confidence 678999999999999999888863 1 24444443322 2357777766543342 234455666
Q ss_pred cCcccccccccchHHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecC-CCHHHHHHHHHHHHHcCCcEEee
Q 017200 231 SGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCG-ETPDQVVSTMEKVRAAGVDVMTF 309 (375)
Q Consensus 231 aGldv~~hnlEtv~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~tkt~imvGlG-ET~ee~~etl~~Lrelgvd~v~i 309 (375)
.|.|-+..-+ + +..+. ..+|+...+-+..+.+... |+.++. |+-.| -+++++....+...++|.|+|..
T Consensus 82 ~GAdEiDvv~---n--~g~l~--~g~~~~v~~ei~~i~~~~~-g~~lKv--IlE~~~L~~~ei~~a~~ia~eaGADfvKT 151 (211)
T TIGR00126 82 YGADEVDMVI---N--IGALK--DGNEEVVYDDIRAVVEACA-GVLLKV--IIETGLLTDEEIRKACEICIDAGADFVKT 151 (211)
T ss_pred cCCCEEEeec---c--hHhhh--CCcHHHHHHHHHHHHHHcC-CCeEEE--EEecCCCCHHHHHHHHHHHHHhCCCEEEe
Confidence 6776543321 1 12233 4567888888888887664 577777 44442 67899999999999999999977
Q ss_pred ecCCCCCCCCCCccccCCHHHHHHHHHHHHHhhhhhhccchhhhhhcchhHHHHH
Q 017200 310 GQYMRPSKRHMPVSEYITPEAFERYRALGMEMGFRYVASGPMVRSSYKVVGWCYY 364 (375)
Q Consensus 310 ~qYl~P~~~~~~v~~~v~pe~~~~l~~~a~~~gf~~~~sgp~vrssy~a~~~~~~ 364 (375)
..=+.| .-.+++..+.+++.... .....+|| -+| +|..-..|+.
T Consensus 152 sTGf~~--------~gat~~dv~~m~~~v~~-~v~IKaaG-Gir-t~~~a~~~i~ 195 (211)
T TIGR00126 152 STGFGA--------GGATVEDVRLMRNTVGD-TIGVKASG-GVR-TAEDAIAMIE 195 (211)
T ss_pred CCCCCC--------CCCCHHHHHHHHHHhcc-CCeEEEeC-CCC-CHHHHHHHHH
Confidence 311112 11456666777665443 45666888 566 5554444443
No 274
>cd00537 MTHFR Methylenetetrahydrofolate reductase (MTHFR). 5,10-Methylenetetrahydrofolate is reduced to 5-methyltetrahydrofolate by methylenetetrahydrofolate reductase, a cytoplasmic, NAD(P)-dependent enzyme. 5-methyltetrahydrofolate is utilized by methionine synthase to convert homocysteine to methionine. The enzymatic mechanism is a ping-pong bi-bi mechanism, in which NAD(P)+ release precedes the binding of methylenetetrahydrofolate and the acceptor is free FAD. The family includes the 5,10-methylenetetrahydrofolate reductase EC:1.7.99.5 from prokaryotes and methylenetetrahydrofolate reductase EC: 1.5.1.20 from eukaryotes. The bacterial enzyme is a homotetramer and NADH is the preferred reductant while the eukaryotic enzyme is a homodimer and NADPH is the preferred reductant. In humans, there are several clinically significant mutations in MTHFR that result in hyperhomocysteinemia, which is a risk factor for the development of cardiovascular disease.
Probab=84.38 E-value=8.8 Score=36.96 Aligned_cols=49 Identities=12% Similarity=0.071 Sum_probs=36.7
Q ss_pred CcchHHHHHHHHHhcCCcEEEEEeeeCCCCCc------ccHHHHHHHHHHHHHhC
Q 017200 158 DPDEPTNVAEAIASWGLDYVVITSVDRDDLAD------QGSGHFAQTVRKLKELK 206 (375)
Q Consensus 158 d~eEi~~~a~al~~~G~~eIvLTsgdr~dl~d------~G~~~~~~lir~Ik~~~ 206 (375)
+..++...+..+.+.|++.|++.+||.+...+ .+..+-.++|+.++..+
T Consensus 71 n~~~l~~~L~~~~~~Gi~~iL~l~GD~~~~~~~~~~~~~~~~~a~~Li~~i~~~~ 125 (274)
T cd00537 71 NRIELQSILLGAHALGIRNILALRGDPPKGGDQPGAKPVGFVYAVDLVELIRKEN 125 (274)
T ss_pred CHHHHHHHHHHHHHCCCCeEEEeCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHhc
Confidence 45788888899999999999999998654432 23445677888887754
No 275
>TIGR00676 fadh2 5,10-methylenetetrahydrofolate reductase, prokaryotic form. This protein is an FAD-containing flavoprotein.
Probab=84.11 E-value=6.8 Score=37.97 Aligned_cols=111 Identities=12% Similarity=0.108 Sum_probs=66.8
Q ss_pred CCcchHHHHHHHHHhcCCcEEEEEeeeCCCC----CcccHHHHHHHHHHHHHhCCCcEEEe-ecCCCC---CC-hHHHH-
Q 017200 157 PDPDEPTNVAEAIASWGLDYVVITSVDRDDL----ADQGSGHFAQTVRKLKELKPNMLIEA-LVPDFR---GN-NGCVR- 226 (375)
Q Consensus 157 ld~eEi~~~a~al~~~G~~eIvLTsgdr~dl----~d~G~~~~~~lir~Ik~~~p~i~Ie~-l~pd~~---g~-~e~l~- 226 (375)
++..++......+.+.|++.|++.+||.+.. +++.+.+-.++|+.|++.++++.|.+ ..|+-. .+ .+.++
T Consensus 70 ~n~~~l~~~L~~~~~~Gi~nvL~l~GD~~~~~~~~~~~~f~~a~~Li~~i~~~~~~f~ig~a~~Peghp~~~~~~~~~~~ 149 (272)
T TIGR00676 70 ATREEIREILREYRELGIRHILALRGDPPKGEGTPTPGGFNYASELVEFIRNEFGDFDIGVAAYPEKHPEAPNLEEDIEN 149 (272)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEeCCCCCCCCCCCCCCCCCCHHHHHHHHHHhcCCeeEEEEeCCCCCCCCCCHHHHHHH
Confidence 4567888888899999999999888875421 12335566788888988777777764 555411 11 22333
Q ss_pred --HHHHcCcccccccccchHHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEec
Q 017200 227 --EVAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGC 285 (375)
Q Consensus 227 --~L~~aGldv~~hnlEtv~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~tkt~imvGl 285 (375)
.=.++|.|.+- -+ .-++.+...+.++.+++ .|+ +.-|+.|+
T Consensus 150 L~~K~~aGA~f~i----------TQ---~~fd~~~~~~~~~~~~~---~gi--~~PIi~Gi 192 (272)
T TIGR00676 150 LKRKVDAGADYAI----------TQ---LFFDNDDYYRFVDRCRA---AGI--DVPIIPGI 192 (272)
T ss_pred HHHHHHcCCCeEe----------ec---cccCHHHHHHHHHHHHH---cCC--CCCEeccc
Confidence 33467776331 01 12455555666666666 342 23466666
No 276
>PRK08185 hypothetical protein; Provisional
Probab=84.10 E-value=45 Score=32.79 Aligned_cols=132 Identities=16% Similarity=0.194 Sum_probs=81.8
Q ss_pred CCcchHHHHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCCCcEEEeecCCCCCChHHHHHHHHcCcccc
Q 017200 157 PDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVF 236 (375)
Q Consensus 157 ld~eEi~~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGldv~ 236 (375)
.+.+.+...++++.+.+.--|+-++...-++. |.. +..+++.+.+.. .+.|. +.-|+-.+.+.++...++|.+++
T Consensus 21 ~n~e~~~avi~AAee~~sPvIl~~~~~~~~~~--~~~-~~~~~~~~a~~~-~vPV~-lHLDHg~~~e~i~~ai~~Gf~SV 95 (283)
T PRK08185 21 ADSCFLRAVVEEAEANNAPAIIAIHPNELDFL--GDN-FFAYVRERAKRS-PVPFV-IHLDHGATIEDVMRAIRCGFTSV 95 (283)
T ss_pred CCHHHHHHHHHHHHHhCCCEEEEeCcchhhhc--cHH-HHHHHHHHHHHC-CCCEE-EECCCCCCHHHHHHHHHcCCCEE
Confidence 45777888888888998887776666443332 234 788888877654 23332 55576667899999999997764
Q ss_pred cccccchHHHHHHhcCCCCCHHH----HHHHHHHHHHhCCCCceE--EEeEEEecCCCH------H----HHHHHHHHHH
Q 017200 237 AHNIETVEELQSAVRDHRANFKQ----SLDVLMMAKDYVPAGTLT--KTSIMLGCGETP------D----QVVSTMEKVR 300 (375)
Q Consensus 237 ~hnlEtv~rl~~~mr~r~~s~~~----~l~vl~~ak~~~p~Gl~t--kt~imvGlGET~------e----e~~etl~~Lr 300 (375)
- ++.+ ..++++ ..++++.++. .|+.+ .-+. +|..|.. + +..+..++++
T Consensus 96 M--~D~S----------~l~~eeNi~~t~~vv~~a~~---~gv~vE~ElG~-vg~~e~~~~~~~~~~~~t~peea~~f~~ 159 (283)
T PRK08185 96 M--IDGS----------LLPYEENVALTKEVVELAHK---VGVSVEGELGT-IGNTGTSIEGGVSEIIYTDPEQAEDFVS 159 (283)
T ss_pred E--EeCC----------CCCHHHHHHHHHHHHHHHHH---cCCeEEEEEee-ccCcccccccccccccCCCHHHHHHHHH
Confidence 2 2222 223333 3455555565 34443 4444 3432211 1 4566678888
Q ss_pred HcCCcEEee
Q 017200 301 AAGVDVMTF 309 (375)
Q Consensus 301 elgvd~v~i 309 (375)
+.|+|.+-+
T Consensus 160 ~TgvD~LAv 168 (283)
T PRK08185 160 RTGVDTLAV 168 (283)
T ss_pred hhCCCEEEe
Confidence 889998777
No 277
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=83.87 E-value=21 Score=37.67 Aligned_cols=174 Identities=16% Similarity=0.156 Sum_probs=99.1
Q ss_pred CCcchHHHH-HHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHh-----CCCcEEEeecCCCCCChHHHHHHHH
Q 017200 157 PDPDEPTNV-AEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKEL-----KPNMLIEALVPDFRGNNGCVREVAK 230 (375)
Q Consensus 157 ld~eEi~~~-a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~-----~p~i~Ie~l~pd~~g~~e~l~~L~~ 230 (375)
.++++.+.. ++.+.+.++.++.++-.+. .+ -|.-...++++..... .....+..+..-.....+.++.|.+
T Consensus 159 v~~~~sL~eAl~lM~~~~i~~LPVVD~~g-~L--vGIIT~~DLl~~~~~~~~~d~~grl~Vgaav~~~~~~~~ra~~Lv~ 235 (475)
T TIGR01303 159 APADTEPRKAFDLLEHAPRDVAPLVDADG-TL--AGILTRTGALRATIYTPATDAAGRLRIGAAVGINGDVGGKAKALLD 235 (475)
T ss_pred eCCCCcHHHHHHHHHHcCCCEEEEEcCCC-eE--EEEEEHHHHHHHHhCCchhhhccCceehheeeeCccHHHHHHHHHH
Confidence 455555444 4566777888877753211 11 1222233444433211 1123455554432224788999999
Q ss_pred cCcccccccccchHHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcCCcEEeee
Q 017200 231 SGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFG 310 (375)
Q Consensus 231 aGldv~~hnlEtv~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~tkt~imvGlGET~ee~~etl~~Lrelgvd~v~i~ 310 (375)
+|+|.+.. ++. .+++ +..++.++.+|+.+|. .-+|+|.+-|.|+..+.+ ++|+|.|.++
T Consensus 236 aGVd~i~~--D~a---------~g~~-~~~~~~i~~i~~~~~~-----~~vi~g~~~t~~~~~~l~----~~G~d~i~vg 294 (475)
T TIGR01303 236 AGVDVLVI--DTA---------HGHQ-VKMISAIKAVRALDLG-----VPIVAGNVVSAEGVRDLL----EAGANIIKVG 294 (475)
T ss_pred hCCCEEEE--eCC---------CCCc-HHHHHHHHHHHHHCCC-----CeEEEeccCCHHHHHHHH----HhCCCEEEEC
Confidence 99998653 332 1233 6678889999986554 468889999988776554 7899999877
Q ss_pred cCCCCCCCC-CC-ccc--cCCHHHHHHHHHHHHHhhhhhhccchhhhhhcc
Q 017200 311 QYMRPSKRH-MP-VSE--YITPEAFERYRALGMEMGFRYVASGPMVRSSYK 357 (375)
Q Consensus 311 qYl~P~~~~-~~-v~~--~v~pe~~~~l~~~a~~~gf~~~~sgp~vrssy~ 357 (375)
+-|+.-- +. +.. ..+........+.+.+.|...+|.| -+|+|..
T Consensus 295 --~g~Gs~~ttr~~~~~g~~~~~a~~~~~~~~~~~~~~viadG-gi~~~~d 342 (475)
T TIGR01303 295 --VGPGAMCTTRMMTGVGRPQFSAVLECAAEARKLGGHVWADG-GVRHPRD 342 (475)
T ss_pred --CcCCccccCccccCCCCchHHHHHHHHHHHHHcCCcEEEeC-CCCCHHH
Confidence 5563211 11 111 1122233444444556677777877 6666643
No 278
>PRK06801 hypothetical protein; Provisional
Probab=83.75 E-value=35 Score=33.56 Aligned_cols=169 Identities=14% Similarity=0.122 Sum_probs=95.4
Q ss_pred CCcchHHHHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCCCcEEEeecCCCCCChHHHHHHHHcCcccc
Q 017200 157 PDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVF 236 (375)
Q Consensus 157 ld~eEi~~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGldv~ 236 (375)
.+.+.+...++++.+.+.--|+-++...-.+ .|...+..+++.+.+.. .+.|. +.-|+..+.+.++.-.++|.+++
T Consensus 26 ~n~e~~~avi~AAe~~~~PvIl~~~~~~~~~--~~~~~~~~~~~~~a~~~-~vpV~-lHlDH~~~~e~i~~Ai~~GftSV 101 (286)
T PRK06801 26 LDSHFLRALFAAAKQERSPFIINIAEVHFKY--ISLESLVEAVKFEAARH-DIPVV-LNLDHGLHFEAVVRALRLGFSSV 101 (286)
T ss_pred CCHHHHHHHHHHHHHHCCCEEEEeCcchhhc--CCHHHHHHHHHHHHHHC-CCCEE-EECCCCCCHHHHHHHHHhCCcEE
Confidence 3567788888888888887776666543333 34778899998887764 23332 45566557888999999998876
Q ss_pred cccccchHHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCceE--EEeEEEecCCC------------HHHHHHHHHHHHHc
Q 017200 237 AHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLT--KTSIMLGCGET------------PDQVVSTMEKVRAA 302 (375)
Q Consensus 237 ~hnlEtv~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~t--kt~imvGlGET------------~ee~~etl~~Lrel 302 (375)
-. +.+.. +-..+.+...++.+.++.. |+.+ -.+-+ | |+. .-+..+..++.++.
T Consensus 102 m~--D~S~l------~~eeNi~~t~~v~~~a~~~---gv~VE~ElG~v-g-g~e~~v~~~~~~~~~~T~pe~a~~f~~~t 168 (286)
T PRK06801 102 MF--DGSTL------EYEENVRQTREVVKMCHAV---GVSVEAELGAV-G-GDEGGALYGEADSAKFTDPQLARDFVDRT 168 (286)
T ss_pred EE--cCCCC------CHHHHHHHHHHHHHHHHHc---CCeEEeecCcc-c-CCCCCcccCCcccccCCCHHHHHHHHHHH
Confidence 43 22110 0011233445566666663 4433 22222 2 211 11336667788889
Q ss_pred CCcEEeeecCCCCCCCCCCccccCCHHHHHHHHHHHHHhhhhhhc
Q 017200 303 GVDVMTFGQYMRPSKRHMPVSEYITPEAFERYRALGMEMGFRYVA 347 (375)
Q Consensus 303 gvd~v~i~qYl~P~~~~~~v~~~v~pe~~~~l~~~a~~~gf~~~~ 347 (375)
|+|.+-+. +. + .|..-.. ..+-.|+.++++....+.-.|+
T Consensus 169 gvD~LAva-iG-t--~Hg~y~~-~~~l~~e~l~~i~~~~~~PLVl 208 (286)
T PRK06801 169 GIDALAVA-IG-N--AHGKYKG-EPKLDFARLAAIHQQTGLPLVL 208 (286)
T ss_pred CcCEEEec-cC-C--CCCCCCC-CCCCCHHHHHHHHHhcCCCEEE
Confidence 99998883 32 1 1221111 1122466666665555544443
No 279
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=83.66 E-value=23 Score=35.61 Aligned_cols=133 Identities=15% Similarity=0.264 Sum_probs=78.9
Q ss_pred hHHHHHHHHHhcCC--cEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCCCcEEEeecCCCCCChHHHHHHHHcCcccccc
Q 017200 161 EPTNVAEAIASWGL--DYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAH 238 (375)
Q Consensus 161 Ei~~~a~al~~~G~--~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGldv~~h 238 (375)
+-.+.+.++.+.|+ +-|+|=.-+ +......++|+.|++.+|++.|-+ ++. ++.+....+.++|+|.+-.
T Consensus 97 ~~~~~~~~Lv~ag~~~d~i~iD~a~------gh~~~~~e~I~~ir~~~p~~~vi~--g~V-~t~e~a~~l~~aGad~i~v 167 (326)
T PRK05458 97 DEYDFVDQLAAEGLTPEYITIDIAH------GHSDSVINMIQHIKKHLPETFVIA--GNV-GTPEAVRELENAGADATKV 167 (326)
T ss_pred HHHHHHHHHHhcCCCCCEEEEECCC------CchHHHHHHHHHHHhhCCCCeEEE--Eec-CCHHHHHHHHHcCcCEEEE
Confidence 45577888888865 888774433 225678899999999998765432 222 1678899999999998753
Q ss_pred cc-cchHHHHHHhcC-CCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcCCcEEeeecCC
Q 017200 239 NI-ETVEELQSAVRD-HRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQYM 313 (375)
Q Consensus 239 nl-Etv~rl~~~mr~-r~~s~~~~l~vl~~ak~~~p~Gl~tkt~imvGlGET~ee~~etl~~Lrelgvd~v~i~qYl 313 (375)
+. .....+.+.... ...+| -+..+..+.+....-+....+ -.+..|+...|. +|.+.+-++.++
T Consensus 168 g~~~G~~~~t~~~~g~~~~~w--~l~ai~~~~~~~~ipVIAdGG-----I~~~~Di~KaLa----~GA~aV~vG~~~ 233 (326)
T PRK05458 168 GIGPGKVCITKIKTGFGTGGW--QLAALRWCAKAARKPIIADGG-----IRTHGDIAKSIR----FGATMVMIGSLF 233 (326)
T ss_pred CCCCCcccccccccCCCCCcc--HHHHHHHHHHHcCCCEEEeCC-----CCCHHHHHHHHH----hCCCEEEechhh
Confidence 32 111111111110 11223 244455555532110111222 368888887764 599999888665
No 280
>cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI. TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions.
Probab=83.66 E-value=22 Score=31.37 Aligned_cols=66 Identities=20% Similarity=0.219 Sum_probs=41.5
Q ss_pred cchHHHHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCCCcEEEeecCCCCCChHHHHHHHHcCcccc
Q 017200 159 PDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVF 236 (375)
Q Consensus 159 ~eEi~~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGldv~ 236 (375)
.+++.+.++++.+.|++.|+|.-.+. ....+...++.|++......+.+++.+ .++...++|+|.+
T Consensus 11 ~~~~~~~l~~l~~~g~~~i~lr~~~~------~~~~~~~~~~~i~~~~~~~~~~l~~~~------~~~~a~~~g~~~v 76 (196)
T cd00564 11 GEDLLEVVEAALKGGVTLVQLREKDL------SARELLELARALRELCRKYGVPLIIND------RVDLALAVGADGV 76 (196)
T ss_pred cchHHHHHHHHHhcCCCEEEEeCCCC------CHHHHHHHHHHHHHHHHHhCCeEEEeC------hHHHHHHcCCCEE
Confidence 35677888899999999988764322 134455666666654322334444432 3667788898855
No 281
>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.
Probab=83.62 E-value=42 Score=33.39 Aligned_cols=170 Identities=16% Similarity=0.203 Sum_probs=94.9
Q ss_pred cchHHHHHHHHHhcCCcEEEEEee--e-CCCCCccc-HHHHHHHHHHHHHhC--CCcEEEeecCCCCCChHHHHHHHHcC
Q 017200 159 PDEPTNVAEAIASWGLDYVVITSV--D-RDDLADQG-SGHFAQTVRKLKELK--PNMLIEALVPDFRGNNGCVREVAKSG 232 (375)
Q Consensus 159 ~eEi~~~a~al~~~G~~eIvLTsg--d-r~dl~d~G-~~~~~~lir~Ik~~~--p~i~Ie~l~pd~~g~~e~l~~L~~aG 232 (375)
+++..+.++.+.+.|++.|.|--. . .+++.... .+.+.++++.+++.. | +.+. +.|++....+.++.+.++|
T Consensus 111 ~~~~~~~a~~~~~~gad~iElN~s~~~~~~~~~g~~~~~~~~eiv~~v~~~~~iP-v~vK-l~p~~~~~~~~a~~l~~~G 188 (325)
T cd04739 111 AGGWVDYARQIEEAGADALELNIYALPTDPDISGAEVEQRYLDILRAVKSAVTIP-VAVK-LSPFFSALAHMAKQLDAAG 188 (325)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCCCcccchHHHHHHHHHHHHHhccCCC-EEEE-cCCCccCHHHHHHHHHHcC
Confidence 578888999988889988877543 1 22222111 145678888888754 3 4444 5666532356778888999
Q ss_pred cccccc-c--ccc-hH-HHHH-----HhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHc
Q 017200 233 LNVFAH-N--IET-VE-ELQS-----AVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAA 302 (375)
Q Consensus 233 ldv~~h-n--lEt-v~-rl~~-----~mr~r~~s~~~~l~vl~~ak~~~p~Gl~tkt~imvGlGET~ee~~etl~~Lrel 302 (375)
+|.+.. | ... ++ +..+ -+. ..+-....++.+..+++.. .+.+- -+|=-.|.+|.++.|. .
T Consensus 189 adgi~~~nt~~~~~id~~~~~~~~~~glS-G~~~~~~al~~v~~v~~~~--~ipIi---g~GGI~s~~Da~e~l~----a 258 (325)
T cd04739 189 ADGLVLFNRFYQPDIDLETLEVVPNLLLS-SPAEIRLPLRWIAILSGRV--KASLA---ASGGVHDAEDVVKYLL----A 258 (325)
T ss_pred CCeEEEEcCcCCCCccccccceecCCCcC-CccchhHHHHHHHHHHccc--CCCEE---EECCCCCHHHHHHHHH----c
Confidence 986532 2 110 11 0000 011 1122345566677766532 12210 0222378888888773 7
Q ss_pred CCcEEeeecCCCCCCCCCCccccCCHHHHHHHHHHHHHhhhhhh
Q 017200 303 GVDVMTFGQYMRPSKRHMPVSEYITPEAFERYRALGMEMGFRYV 346 (375)
Q Consensus 303 gvd~v~i~qYl~P~~~~~~v~~~v~pe~~~~l~~~a~~~gf~~~ 346 (375)
|.+.|-++.-+- .++. .+.++-.+.|.++..+.||..+
T Consensus 259 GA~~Vqv~ta~~--~~gp----~~~~~i~~~L~~~l~~~g~~~i 296 (325)
T cd04739 259 GADVVMTTSALL--RHGP----DYIGTLLAGLEAWMEEHGYESV 296 (325)
T ss_pred CCCeeEEehhhh--hcCc----hHHHHHHHHHHHHHHHcCCCCH
Confidence 999888862210 0111 1234556777777788888655
No 282
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=83.35 E-value=14 Score=36.00 Aligned_cols=168 Identities=15% Similarity=0.204 Sum_probs=89.9
Q ss_pred CcchHHHHHHHHHhcC-CcEEEEEee--e--C-CCCCcccHHHHHHHHHHHHHhCCCcEEEe-ecCCCCCChHHHHHHHH
Q 017200 158 DPDEPTNVAEAIASWG-LDYVVITSV--D--R-DDLADQGSGHFAQTVRKLKELKPNMLIEA-LVPDFRGNNGCVREVAK 230 (375)
Q Consensus 158 d~eEi~~~a~al~~~G-~~eIvLTsg--d--r-~dl~d~G~~~~~~lir~Ik~~~p~i~Ie~-l~pd~~g~~e~l~~L~~ 230 (375)
++++..+.|+.+.+.| ++.|-|--+ + + ........+.+.++++.|++.. ++.|-+ +.|++....+.++.+.+
T Consensus 102 ~~~~~~~~a~~~~~aG~~D~iElN~~cP~~~~gg~~~~~~~~~~~eiv~~vr~~~-~~pv~vKl~~~~~~~~~~a~~l~~ 180 (301)
T PRK07259 102 TEEEYAEVAEKLSKAPNVDAIELNISCPNVKHGGMAFGTDPELAYEVVKAVKEVV-KVPVIVKLTPNVTDIVEIAKAAEE 180 (301)
T ss_pred CHHHHHHHHHHHhccCCcCEEEEECCCCCCCCCccccccCHHHHHHHHHHHHHhc-CCCEEEEcCCCchhHHHHHHHHHH
Confidence 4789999999999998 998877332 1 1 0011112567889999999864 233322 34444212455677888
Q ss_pred cCcccccc-c--------ccchHHHH----HHhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEec--CCCHHHHHHH
Q 017200 231 SGLNVFAH-N--------IETVEELQ----SAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGC--GETPDQVVST 295 (375)
Q Consensus 231 aGldv~~h-n--------lEtv~rl~----~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~tkt~imvGl--GET~ee~~et 295 (375)
+|+|.+.. | +++-.... .-+. ..+.....++.+..+++.. +++ ++|. -.|.++..+.
T Consensus 181 ~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~s-g~~~~p~~l~~v~~i~~~~--~ip-----vi~~GGI~~~~da~~~ 252 (301)
T PRK07259 181 AGADGLSLINTLKGMAIDIKTRKPILANVTGGLS-GPAIKPIALRMVYQVYQAV--DIP-----IIGMGGISSAEDAIEF 252 (301)
T ss_pred cCCCEEEEEccccccccccccCceeecCCcCccC-CcCcccccHHHHHHHHHhC--CCC-----EEEECCCCCHHHHHHH
Confidence 99886531 1 11100000 0011 1111223567777777743 122 2333 3688888887
Q ss_pred HHHHHHcCCcEEeeecCCCCCCCCCCccccCCHHHHHHHHHHHHHhhhhh
Q 017200 296 MEKVRAAGVDVMTFGQYMRPSKRHMPVSEYITPEAFERYRALGMEMGFRY 345 (375)
Q Consensus 296 l~~Lrelgvd~v~i~qYl~P~~~~~~v~~~v~pe~~~~l~~~a~~~gf~~ 345 (375)
+ ..|.|.|-++ ++.-.. ..+...-.+.+..+..+.||..
T Consensus 253 l----~aGAd~V~ig---r~ll~~----P~~~~~i~~~l~~~~~~~g~~~ 291 (301)
T PRK07259 253 I----MAGASAVQVG---TANFYD----PYAFPKIIEGLEAYLDKYGIKS 291 (301)
T ss_pred H----HcCCCceeEc---HHHhcC----cHHHHHHHHHHHHHHHHcCCCC
Confidence 7 3688888886 221111 1112223445556666677654
No 283
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=83.34 E-value=12 Score=36.66 Aligned_cols=77 Identities=16% Similarity=0.158 Sum_probs=53.7
Q ss_pred hHHHHHHHHcCcccccccccchHHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHH
Q 017200 222 NGCVREVAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRA 301 (375)
Q Consensus 222 ~e~l~~L~~aGldv~~hnlEtv~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~tkt~imvGlGET~ee~~etl~~Lre 301 (375)
...++.+.+.|++.+-.+=-|.+ . ..-+.+++.++++.+.+.... +..+|+|.|.+.+|.++..+...+
T Consensus 31 ~~li~~l~~~Gv~Gi~~~GstGE-----~--~~Lt~eEr~~~~~~~~~~~~~----~~pvi~gv~~~t~~~i~~~~~a~~ 99 (303)
T PRK03620 31 REHLEWLAPYGAAALFAAGGTGE-----F--FSLTPDEYSQVVRAAVETTAG----RVPVIAGAGGGTAQAIEYAQAAER 99 (303)
T ss_pred HHHHHHHHHcCCCEEEECcCCcC-----c--ccCCHHHHHHHHHHHHHHhCC----CCcEEEecCCCHHHHHHHHHHHHH
Confidence 45566777778776533211222 1 245678889999988875432 456788886688999999999999
Q ss_pred cCCcEEee
Q 017200 302 AGVDVMTF 309 (375)
Q Consensus 302 lgvd~v~i 309 (375)
+|+|.+-+
T Consensus 100 ~Gadav~~ 107 (303)
T PRK03620 100 AGADGILL 107 (303)
T ss_pred hCCCEEEE
Confidence 99997765
No 284
>PRK03739 2-isopropylmalate synthase; Validated
Probab=82.74 E-value=74 Score=34.24 Aligned_cols=138 Identities=12% Similarity=0.106 Sum_probs=83.1
Q ss_pred CCCcchHHHHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHh-C--CCcEEEeecCCCCCC-hHHHHHHHHc
Q 017200 156 PPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKEL-K--PNMLIEALVPDFRGN-NGCVREVAKS 231 (375)
Q Consensus 156 ~ld~eEi~~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~-~--p~i~Ie~l~pd~~g~-~e~l~~L~~a 231 (375)
+++.+|=++.|+++.+.|+++|-+.- |...+. + .+.++.|.+. . ++..+.++.+...++ +..++.++.+
T Consensus 48 ~~s~~~Ki~ia~~L~~~GV~~IE~Gf---P~~s~~--e--~e~v~~i~~~~~~~~~~~i~~l~r~~~~di~~a~~a~~~~ 120 (552)
T PRK03739 48 PMSPERKLRMFDLLVKIGFKEIEVGF---PSASQT--D--FDFVRELIEEGLIPDDVTIQVLTQAREHLIERTFEALEGA 120 (552)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEEC---CCcChH--H--HHHHHHHHHhcCCCCCCEEEEEeccchhHHHHHHHHhcCC
Confidence 58999999999999999999998762 433331 1 3566677444 2 467888888875432 2233344444
Q ss_pred CcccccccccchH-HHHHHhcCCCCCHHHHHHHH----HHHHHhCCCCc-eEEEeEEEec-CC----CH-HHHHHHHHHH
Q 017200 232 GLNVFAHNIETVE-ELQSAVRDHRANFKQSLDVL----MMAKDYVPAGT-LTKTSIMLGC-GE----TP-DQVVSTMEKV 299 (375)
Q Consensus 232 Gldv~~hnlEtv~-rl~~~mr~r~~s~~~~l~vl----~~ak~~~p~Gl-~tkt~imvGl-GE----T~-ee~~etl~~L 299 (375)
+...+...+-+++ -+...++ .+.++.++.+ +.+++. |. ...+.+-+=| +| ++ +-+++.++.+
T Consensus 121 ~~~~v~i~~~~Sd~h~~~~l~---~t~ee~l~~~~~~v~~a~~~---~~~~~~~~~~v~f~~EDasR~d~~~l~~~~~~a 194 (552)
T PRK03739 121 KRAIVHLYNSTSPLQRRVVFG---KDRDGIKAIAVDGARLVKEL---AAKYPETEWRFEYSPESFTGTELDFALEVCDAV 194 (552)
T ss_pred CCCEEEEEEcCCHHHHHHHhC---CCHHHHHHHHHHHHHHHHHh---cccccCceeEEEEecccCCCCCHHHHHHHHHHH
Confidence 4445666667777 3444444 4566665554 455553 32 1234466666 77 65 4455666776
Q ss_pred HH---cCCcE
Q 017200 300 RA---AGVDV 306 (375)
Q Consensus 300 re---lgvd~ 306 (375)
.+ .+.+.
T Consensus 195 ~~~~~ag~~~ 204 (552)
T PRK03739 195 IDVWQPTPER 204 (552)
T ss_pred HHhhcCCCCc
Confidence 65 45553
No 285
>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family. DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.
Probab=82.53 E-value=40 Score=31.01 Aligned_cols=168 Identities=15% Similarity=0.208 Sum_probs=101.4
Q ss_pred CCcchHHHHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCCCcEEEeecCCCCCC------hHHHHHHHH
Q 017200 157 PDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGN------NGCVREVAK 230 (375)
Q Consensus 157 ld~eEi~~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p~i~Ie~l~pd~~g~------~e~l~~L~~ 230 (375)
.+.+++.+.++.+.+.|++-++++-+ ++..++..-.. ..+.+.+......|. ...++...+
T Consensus 14 ~t~~~i~~~~~~a~~~~~~av~v~p~------------~v~~~~~~l~~-~~~~v~~~~~fp~g~~~~~~k~~eve~A~~ 80 (203)
T cd00959 14 ATEEDIRKLCDEAKEYGFAAVCVNPC------------FVPLAREALKG-SGVKVCTVIGFPLGATTTEVKVAEAREAIA 80 (203)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEcHH------------HHHHHHHHcCC-CCcEEEEEEecCCCCCcHHHHHHHHHHHHH
Confidence 56789999999999999999987621 23333222111 236666544322221 223556666
Q ss_pred cCcccccccccchHHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecC-CCHHHHHHHHHHHHHcCCcEEee
Q 017200 231 SGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCG-ETPDQVVSTMEKVRAAGVDVMTF 309 (375)
Q Consensus 231 aGldv~~hnlEtv~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~tkt~imvGlG-ET~ee~~etl~~Lrelgvd~v~i 309 (375)
.|.|-+...+.. ..+. ...++..++-+..+.+... |+.++. |+..| -+++++....+...++|.|+|..
T Consensus 81 ~GAdevdvv~~~-----g~~~--~~~~~~~~~ei~~v~~~~~-g~~lkv--I~e~~~l~~~~i~~a~ria~e~GaD~IKT 150 (203)
T cd00959 81 DGADEIDMVINI-----GALK--SGDYEAVYEEIAAVVEACG-GAPLKV--ILETGLLTDEEIIKACEIAIEAGADFIKT 150 (203)
T ss_pred cCCCEEEEeecH-----HHHh--CCCHHHHHHHHHHHHHhcC-CCeEEE--EEecCCCCHHHHHHHHHHHHHhCCCEEEc
Confidence 777755432211 1122 3456777777888877665 577777 67774 45789999999999999999987
Q ss_pred ec-CCCCCCCCCCccccCCHHHHHHHHHHHHHhhhhhhccchhhhhhcchh
Q 017200 310 GQ-YMRPSKRHMPVSEYITPEAFERYRALGMEMGFRYVASGPMVRSSYKVV 359 (375)
Q Consensus 310 ~q-Yl~P~~~~~~v~~~v~pe~~~~l~~~a~~~gf~~~~sgp~vrssy~a~ 359 (375)
.. |. | .-.+++..+.+.+... -.....++| -+| +|..-
T Consensus 151 sTG~~-~--------~~at~~~v~~~~~~~~-~~v~ik~aG-Gik-t~~~~ 189 (203)
T cd00959 151 STGFG-P--------GGATVEDVKLMKEAVG-GRVGVKAAG-GIR-TLEDA 189 (203)
T ss_pred CCCCC-C--------CCCCHHHHHHHHHHhC-CCceEEEeC-CCC-CHHHH
Confidence 31 21 1 1145666677766654 234455777 555 44433
No 286
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....
Probab=81.95 E-value=7.3 Score=37.72 Aligned_cols=78 Identities=10% Similarity=0.157 Sum_probs=53.3
Q ss_pred hHHHHHHHHcCcccccccccchHHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEec-CCCHHHHHHHHHHHH
Q 017200 222 NGCVREVAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGC-GETPDQVVSTMEKVR 300 (375)
Q Consensus 222 ~e~l~~L~~aGldv~~hnlEtv~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~tkt~imvGl-GET~ee~~etl~~Lr 300 (375)
.+.++.+.+.|++.+-.+--+.+- ..-+.+++.++++.+.+..+. +.-+|+|. +.+-+|.++..+..+
T Consensus 25 ~~~i~~l~~~Gv~gl~~~GstGE~-------~~Lt~~Er~~l~~~~~~~~~~----~~~vi~gv~~~st~~~i~~a~~a~ 93 (289)
T PF00701_consen 25 KRLIDFLIEAGVDGLVVLGSTGEF-------YSLTDEERKELLEIVVEAAAG----RVPVIAGVGANSTEEAIELARHAQ 93 (289)
T ss_dssp HHHHHHHHHTTSSEEEESSTTTTG-------GGS-HHHHHHHHHHHHHHHTT----SSEEEEEEESSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCEEEECCCCccc-------ccCCHHHHHHHHHHHHHHccC----ceEEEecCcchhHHHHHHHHHHHh
Confidence 455666777887765332222221 134678889999988885433 45589999 679999999999999
Q ss_pred HcCCcEEeee
Q 017200 301 AAGVDVMTFG 310 (375)
Q Consensus 301 elgvd~v~i~ 310 (375)
++|+|.+-+.
T Consensus 94 ~~Gad~v~v~ 103 (289)
T PF00701_consen 94 DAGADAVLVI 103 (289)
T ss_dssp HTT-SEEEEE
T ss_pred hcCceEEEEe
Confidence 9999976553
No 287
>TIGR00677 fadh2_euk methylenetetrahydrofolate reductase, eukaryotic type. This protein is an FAD-containing flavoprotein.
Probab=81.86 E-value=10 Score=37.07 Aligned_cols=110 Identities=12% Similarity=0.120 Sum_probs=64.1
Q ss_pred CcchHHHHHHHHHhcCCcEEEEEeeeCCCC------CcccHHHHHHHHHHHHHhCCC-cEEEe-ecCCCC---CChH-HH
Q 017200 158 DPDEPTNVAEAIASWGLDYVVITSVDRDDL------ADQGSGHFAQTVRKLKELKPN-MLIEA-LVPDFR---GNNG-CV 225 (375)
Q Consensus 158 d~eEi~~~a~al~~~G~~eIvLTsgdr~dl------~d~G~~~~~~lir~Ik~~~p~-i~Ie~-l~pd~~---g~~e-~l 225 (375)
+.+++...+..+.+.|++.|++.+||.+.. +.+.+++-.++|+.|++..+. ..|.+ ..|+-. .+.+ .+
T Consensus 72 ~~~~l~~~L~~~~~~Gi~niLal~GD~p~~~~~~~~~~~~f~~a~~Li~~i~~~~~~~f~igva~~Pe~Hp~~~~~~~d~ 151 (281)
T TIGR00677 72 PIEMIDDALERAYSNGIQNILALRGDPPHIGDDWTEVEGGFQYAVDLVKYIRSKYGDYFCIGVAGYPEGHPEAESVELDL 151 (281)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCcCHHHHHHHHHHhCCCceEEEEEECCCCCCCCCCHHHHH
Confidence 346888888888999999999888886422 223456677899999876543 55553 444321 1222 23
Q ss_pred HHH---HHcCcccccccccchHHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEec
Q 017200 226 REV---AKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGC 285 (375)
Q Consensus 226 ~~L---~~aGldv~~hnlEtv~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~tkt~imvGl 285 (375)
+.| .++|+|.+- -+ .-++.+.+.+.++.+++ .|+ +.-||.|+
T Consensus 152 ~~L~~Ki~aGA~f~i----------TQ---~~Fd~~~~~~f~~~~~~---~gi--~~PIi~GI 196 (281)
T TIGR00677 152 KYLKEKVDAGADFII----------TQ---LFYDVDNFLKFVNDCRA---IGI--DCPIVPGI 196 (281)
T ss_pred HHHHHHHHcCCCEee----------cc---ceecHHHHHHHHHHHHH---cCC--CCCEEeec
Confidence 333 357777431 11 12445555566666666 332 23456666
No 288
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=81.86 E-value=11 Score=31.91 Aligned_cols=67 Identities=15% Similarity=0.188 Sum_probs=44.5
Q ss_pred HHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCC-CcEEEeecCCCCCChHHHHHHHHcCcccccc
Q 017200 164 NVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKP-NMLIEALVPDFRGNNGCVREVAKSGLNVFAH 238 (375)
Q Consensus 164 ~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p-~i~Ie~l~pd~~g~~e~l~~L~~aGldv~~h 238 (375)
+.++++.+.+.+.|+|.+.+... ...+.++++.+++..+ ++. ++.+.-. ..+..+.++++|+|.+=|
T Consensus 41 ~~~~~a~~~~~d~V~iS~~~~~~-----~~~~~~~~~~L~~~~~~~i~--i~~GG~~-~~~~~~~~~~~G~d~~~~ 108 (122)
T cd02071 41 EIVEAAIQEDVDVIGLSSLSGGH-----MTLFPEVIELLRELGAGDIL--VVGGGII-PPEDYELLKEMGVAEIFG 108 (122)
T ss_pred HHHHHHHHcCCCEEEEcccchhh-----HHHHHHHHHHHHhcCCCCCE--EEEECCC-CHHHHHHHHHCCCCEEEC
Confidence 34556668899999998875432 3456788888888744 333 3333211 356789999999987755
No 289
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=81.27 E-value=16 Score=35.45 Aligned_cols=77 Identities=12% Similarity=0.136 Sum_probs=50.7
Q ss_pred hHHHHHHHHc-CcccccccccchHHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEec-CCCHHHHHHHHHHH
Q 017200 222 NGCVREVAKS-GLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGC-GETPDQVVSTMEKV 299 (375)
Q Consensus 222 ~e~l~~L~~a-Gldv~~hnlEtv~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~tkt~imvGl-GET~ee~~etl~~L 299 (375)
...++.+.+. |++.+-.+-.|.+- ..-+.+++.++++.+.+... | +..+|+|. +.+-+|.++..+..
T Consensus 24 ~~~i~~l~~~~Gv~gi~~~GstGE~-------~~Lt~~Er~~~~~~~~~~~~-~---~~~viagv~~~~~~~ai~~a~~a 92 (288)
T cd00954 24 RAIVDYLIEKQGVDGLYVNGSTGEG-------FLLSVEERKQIAEIVAEAAK-G---KVTLIAHVGSLNLKESQELAKHA 92 (288)
T ss_pred HHHHHHHHhcCCCCEEEECcCCcCc-------ccCCHHHHHHHHHHHHHHhC-C---CCeEEeccCCCCHHHHHHHHHHH
Confidence 4456666677 77665333222221 13457888888888777542 2 45788888 46788888888888
Q ss_pred HHcCCcEEee
Q 017200 300 RAAGVDVMTF 309 (375)
Q Consensus 300 relgvd~v~i 309 (375)
+++|.|.+-+
T Consensus 93 ~~~Gad~v~~ 102 (288)
T cd00954 93 EELGYDAISA 102 (288)
T ss_pred HHcCCCEEEE
Confidence 8888887655
No 290
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=81.01 E-value=38 Score=32.73 Aligned_cols=47 Identities=6% Similarity=0.219 Sum_probs=23.1
Q ss_pred hHHHHHHHHcCcccccccccc---------hH-HHHHHhcCCCCCHHHHHHHHHHHHH
Q 017200 222 NGCVREVAKSGLNVFAHNIET---------VE-ELQSAVRDHRANFKQSLDVLMMAKD 269 (375)
Q Consensus 222 ~e~l~~L~~aGldv~~hnlEt---------v~-rl~~~mr~r~~s~~~~l~vl~~ak~ 269 (375)
.+.+..+.+.|+|.+..++-. .. .-.+.+. .+.+.++.++.++.+++
T Consensus 29 ~~~~~~l~~~Gad~iElGiPfSDP~aDGpvIq~a~~~AL~-~G~~~~~~~~~~~~~r~ 85 (258)
T PRK13111 29 LEIIKALVEAGADIIELGIPFSDPVADGPVIQAASLRALA-AGVTLADVFELVREIRE 85 (258)
T ss_pred HHHHHHHHHCCCCEEEECCCCCCCcccCHHHHHHHHHHHH-cCCCHHHHHHHHHHHHh
Confidence 444555555566655444311 11 1223344 35566666666666663
No 291
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=80.86 E-value=23 Score=37.25 Aligned_cols=133 Identities=19% Similarity=0.261 Sum_probs=79.6
Q ss_pred hHHHHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCCCcEEEeecCCCCCChHHHHHHHHcCcccccccc
Q 017200 161 EPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHNI 240 (375)
Q Consensus 161 Ei~~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGldv~~hnl 240 (375)
+..+.++++.+.|++.+++.+-+.. ...+.+.++.|++.+|++.|-+ ++.. +.+....+.++|+|.+..+.
T Consensus 228 ~~~e~a~~L~~agvdvivvD~a~g~------~~~vl~~i~~i~~~~p~~~vi~--g~v~-t~e~a~~l~~aGad~i~vg~ 298 (486)
T PRK05567 228 DNEERAEALVEAGVDVLVVDTAHGH------SEGVLDRVREIKAKYPDVQIIA--GNVA-TAEAARALIEAGADAVKVGI 298 (486)
T ss_pred chHHHHHHHHHhCCCEEEEECCCCc------chhHHHHHHHHHhhCCCCCEEE--eccC-CHHHHHHHHHcCCCEEEECC
Confidence 4588899999999997765543211 3457889999999887755432 3332 78899999999999985432
Q ss_pred c-chHHHHHHhcCC-CCCHHHHHHHHHHHHHhCCCCceEEEeEEE-ecCCCHHHHHHHHHHHHHcCCcEEeeecCC
Q 017200 241 E-TVEELQSAVRDH-RANFKQSLDVLMMAKDYVPAGTLTKTSIML-GCGETPDQVVSTMEKVRAAGVDVMTFGQYM 313 (375)
Q Consensus 241 E-tv~rl~~~mr~r-~~s~~~~l~vl~~ak~~~p~Gl~tkt~imv-GlGET~ee~~etl~~Lrelgvd~v~i~qYl 313 (375)
= .+....+.+..- ..+++--.++.+.+++ .|+ .+|. |=--|..|+...|. +|.+.+-+|..+
T Consensus 299 g~gs~~~~r~~~~~g~p~~~~~~~~~~~~~~---~~~----~viadGGi~~~~di~kAla----~GA~~v~~G~~~ 363 (486)
T PRK05567 299 GPGSICTTRIVAGVGVPQITAIADAAEAAKK---YGI----PVIADGGIRYSGDIAKALA----AGASAVMLGSML 363 (486)
T ss_pred CCCccccceeecCCCcCHHHHHHHHHHHhcc---CCC----eEEEcCCCCCHHHHHHHHH----hCCCEEEECccc
Confidence 0 010111111111 1123333333333333 233 3444 11257888887774 699999898776
No 292
>PLN02617 imidazole glycerol phosphate synthase hisHF
Probab=80.66 E-value=35 Score=36.66 Aligned_cols=146 Identities=13% Similarity=0.077 Sum_probs=85.0
Q ss_pred CCCcchHHHHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCCCcEEEeecCCCCCC-----------hHH
Q 017200 156 PPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGN-----------NGC 224 (375)
Q Consensus 156 ~ld~eEi~~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p~i~Ie~l~pd~~g~-----------~e~ 224 (375)
..+..+|++.|+...+.|++++++.=.+..--...+-..+.++|++|.+.. .+.+. .+.-..+ .|.
T Consensus 263 ~~~~gdPve~a~~y~~~Gadel~~~Di~~~~~~~~~~~~~~~~i~~i~~~~-~ip~~--vGGGIr~~~d~~~~~~~~~e~ 339 (538)
T PLN02617 263 VRNLGKPVELAGQYYKDGADEVAFLNITGFRDFPLGDLPMLEVLRRASENV-FVPLT--VGGGIRDFTDANGRYYSSLEV 339 (538)
T ss_pred CCcCCCHHHHHHHHHHcCCCEEEEEECCCCcCCcccchhHHHHHHHHHhhC-CCCEE--EcCCccccccccccccchHHH
Confidence 467889999999999999999999855421000111234688898887643 22222 2211112 378
Q ss_pred HHHHHHcCcccccccccch---HHHHHHhcCCCCCHHHHHHHHHHHHHhCCCC-ceEEEe--------------------
Q 017200 225 VREVAKSGLNVFAHNIETV---EELQSAVRDHRANFKQSLDVLMMAKDYVPAG-TLTKTS-------------------- 280 (375)
Q Consensus 225 l~~L~~aGldv~~hnlEtv---~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~G-l~tkt~-------------------- 280 (375)
++.+.++|+|.+..|-..+ ++.|..= ...+ -+.++.+.+.++.. +.+.-+
T Consensus 340 ~~~~l~~GadkV~i~s~Av~~~~~~~~~~--~~~~----p~~i~~~~~~fg~q~ivvsiD~k~~~~~~~~~~~~~~~~~~ 413 (538)
T PLN02617 340 ASEYFRSGADKISIGSDAVYAAEEYIASG--VKTG----KTSIEQISRVYGNQAVVVSIDPRRVYVKDPSDVPFKTVKVT 413 (538)
T ss_pred HHHHHHcCCCEEEEChHHHhChhhhhccc--cccC----HHHHHHHHHHcCCceEEEEEecCcCcccCcccccccccccc
Confidence 9999999999988873222 2222110 1111 24444444444332 222222
Q ss_pred -------------EEE--ecCCCHHHHHHHHHHHHHcCCcEEeee
Q 017200 281 -------------IML--GCGETPDQVVSTMEKVRAAGVDVMTFG 310 (375)
Q Consensus 281 -------------imv--GlGET~ee~~etl~~Lrelgvd~v~i~ 310 (375)
+.+ |.-.|.-+.++.++.+.++|+..+-+.
T Consensus 414 ~~~~~~~~~~~~~v~~~gg~~~~~~~~~~~~~~~~~~Gageil~t 458 (538)
T PLN02617 414 NPGPNGEEYAWYQCTVKGGREGRPIGAYELAKAVEELGAGEILLN 458 (538)
T ss_pred ccCcCcccceEEEEEEecCcccCCCCHHHHHHHHHhcCCCEEEEe
Confidence 111 112367788999999999999877663
No 293
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=80.64 E-value=12 Score=36.05 Aligned_cols=78 Identities=13% Similarity=0.156 Sum_probs=52.6
Q ss_pred hHHHHHHHHcCcccccccccchHHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEec-CCCHHHHHHHHHHHH
Q 017200 222 NGCVREVAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGC-GETPDQVVSTMEKVR 300 (375)
Q Consensus 222 ~e~l~~L~~aGldv~~hnlEtv~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~tkt~imvGl-GET~ee~~etl~~Lr 300 (375)
.+.++.+.+.|++.+-.+=.|.+- ..-+.+++.++++.+.+.... +..+|+|. +.+.+|.++..+..+
T Consensus 21 ~~~i~~l~~~Gv~gi~~~GstGE~-------~~ls~~Er~~l~~~~~~~~~~----~~~vi~gv~~~~~~~~i~~a~~a~ 89 (281)
T cd00408 21 RRLVEFLIEAGVDGLVVLGTTGEA-------PTLTDEERKEVIEAVVEAVAG----RVPVIAGVGANSTREAIELARHAE 89 (281)
T ss_pred HHHHHHHHHcCCCEEEECCCCccc-------ccCCHHHHHHHHHHHHHHhCC----CCeEEEecCCccHHHHHHHHHHHH
Confidence 455666777777765433222221 134678888888888875432 45688888 568888888888888
Q ss_pred HcCCcEEeee
Q 017200 301 AAGVDVMTFG 310 (375)
Q Consensus 301 elgvd~v~i~ 310 (375)
++|+|.+-+.
T Consensus 90 ~~Gad~v~v~ 99 (281)
T cd00408 90 EAGADGVLVV 99 (281)
T ss_pred HcCCCEEEEC
Confidence 9998877663
No 294
>PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=80.52 E-value=46 Score=30.40 Aligned_cols=112 Identities=21% Similarity=0.275 Sum_probs=71.3
Q ss_pred CCcchHHHHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCCCcEEEeecCCCCCChHHHHHHHHcCcccc
Q 017200 157 PDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVF 236 (375)
Q Consensus 157 ld~eEi~~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGldv~ 236 (375)
.++++..+.++++.+.|++-|-|+-=+. + -.++++.+++..|.+.+..-+. + ..+.++...++|.|.+
T Consensus 21 ~~~~~~~~~~~~~~~~Gv~~vqlr~k~~----~-----~~e~~~~~~~~~~~~~~g~gtv-l--~~d~~~~A~~~gAdgv 88 (187)
T PRK07455 21 PDLELGLQMAEAVAAGGMRLIEITWNSD----Q-----PAELISQLREKLPECIIGTGTI-L--TLEDLEEAIAAGAQFC 88 (187)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEeCCCC----C-----HHHHHHHHHHhCCCcEEeEEEE-E--cHHHHHHHHHcCCCEE
Confidence 3688999999999999999998883211 1 2355666666667655543111 1 4578999999999866
Q ss_pred cccccchHHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcCCcEEeee
Q 017200 237 AHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFG 310 (375)
Q Consensus 237 ~hnlEtv~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~tkt~imvGlGET~ee~~etl~~Lrelgvd~v~i~ 310 (375)
... ..+ .++++.++. .|+ ..+.| -.|.+|+.+.. +.|.|++.|+
T Consensus 89 ~~p--------------~~~----~~~~~~~~~---~~~----~~i~G-~~t~~e~~~A~----~~Gadyv~~F 132 (187)
T PRK07455 89 FTP--------------HVD----PELIEAAVA---QDI----PIIPG-ALTPTEIVTAW----QAGASCVKVF 132 (187)
T ss_pred ECC--------------CCC----HHHHHHHHH---cCC----CEEcC-cCCHHHHHHHH----HCCCCEEEEC
Confidence 211 111 122222333 123 35677 57888877665 4899999984
No 295
>PRK02506 dihydroorotate dehydrogenase 1A; Reviewed
Probab=80.43 E-value=30 Score=34.16 Aligned_cols=187 Identities=13% Similarity=0.142 Sum_probs=103.2
Q ss_pred HHHhcCCcEEEEEeeeCC---------------------CCCcccHHHHHHHHHHHHHhCCCcE-EEeecCCCCC-ChHH
Q 017200 168 AIASWGLDYVVITSVDRD---------------------DLADQGSGHFAQTVRKLKELKPNML-IEALVPDFRG-NNGC 224 (375)
Q Consensus 168 al~~~G~~eIvLTsgdr~---------------------dl~d~G~~~~~~lir~Ik~~~p~i~-Ie~l~pd~~g-~~e~ 224 (375)
++...|+..|++=+.... .++..|.+.|.+.++.+++..++.. |-.+.+.-.+ ..+.
T Consensus 31 ~~~~~g~Gavv~ktit~~p~~gn~~pr~~~~~~~~~N~~Gl~n~g~~~~~~~i~~~~~~~~~~pvI~Si~G~~~~~~~~~ 110 (310)
T PRK02506 31 EVEASAAGAFVTKSATLEPRPGNPEPRYADTPLGSINSMGLPNLGFDYYLDYVLELQKKGPNKPHFLSVVGLSPEETHTI 110 (310)
T ss_pred HHHHcCCcEEEeCccCCCCCCCCCCCeEEECcchhhccCCCCCcCHHHHHHHHHHHHhhcCCCCEEEEEEeCcHHHHHHH
Confidence 466778888877666311 2334567888888888876644332 2122221100 2455
Q ss_pred HHHHHHcC-cccccccccchHHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcC
Q 017200 225 VREVAKSG-LNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAG 303 (375)
Q Consensus 225 l~~L~~aG-ldv~~hnlEtv~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~tkt~imvGlGET~ee~~etl~~Lrelg 303 (375)
++.+.++| +|.+..|+..-+ + +.-+.-+.+.+...++++.+++....=+.+|-+-- -+..++.+.+..+.+.+
T Consensus 111 a~~~~~~g~ad~iElN~ScPn-~-~~~~~~g~d~~~~~~i~~~v~~~~~~Pv~vKlsp~----~~~~~~a~~~~~~~~~g 184 (310)
T PRK02506 111 LKKIQASDFNGLVELNLSCPN-V-PGKPQIAYDFETTEQILEEVFTYFTKPLGVKLPPY----FDIVHFDQAAAIFNKFP 184 (310)
T ss_pred HHHHhhcCCCCEEEEECCCCC-C-CCccccccCHHHHHHHHHHHHHhcCCccEEecCCC----CCHHHHHHHHHHhCcCc
Confidence 66666777 888888775432 1 01111234678888888888874311022333322 26677887777777888
Q ss_pred CcEEeeecC----C--CCCCCCCCcc-----------ccCCHHHHHHHHHHHHHh--hhhhhccchhhhhhcchhHHH
Q 017200 304 VDVMTFGQY----M--RPSKRHMPVS-----------EYITPEAFERYRALGMEM--GFRYVASGPMVRSSYKVVGWC 362 (375)
Q Consensus 304 vd~v~i~qY----l--~P~~~~~~v~-----------~~v~pe~~~~l~~~a~~~--gf~~~~sgp~vrssy~a~~~~ 362 (375)
++.+...+= + .+.. ..++. ..++|-..+...++.... .+...++| -|.|...|-|++
T Consensus 185 ~~~i~~~nt~~~~~~iD~~~-~~~~~~~~~~~GGlSG~~i~p~al~~v~~~~~~~~~~ipIig~G-GI~s~~da~e~i 260 (310)
T PRK02506 185 LAFVNCINSIGNGLVIDPED-ETVVIKPKNGFGGIGGDYIKPTALANVRAFYQRLNPSIQIIGTG-GVKTGRDAFEHI 260 (310)
T ss_pred eEEEEEeccCCCceEEecCC-CCccccCCCCCCcCCchhccHHHHHHHHHHHHhcCCCCCEEEEC-CCCCHHHHHHHH
Confidence 876655431 1 1100 11110 225566677777777766 36666777 666555444443
No 296
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=80.37 E-value=17 Score=31.54 Aligned_cols=69 Identities=13% Similarity=0.074 Sum_probs=45.1
Q ss_pred HHHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCCCcEEEeecCCCCCChHHHHHHHHcCcccccc
Q 017200 163 TNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAH 238 (375)
Q Consensus 163 ~~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGldv~~h 238 (375)
.+.++++.+.+.+-|+|+|-+... ...+.++++.|++..+. .+.++.+... ..+..+.++++|+|.+=|
T Consensus 43 e~~v~aa~e~~adii~iSsl~~~~-----~~~~~~~~~~L~~~g~~-~i~vivGG~~-~~~~~~~l~~~Gvd~~~~ 111 (132)
T TIGR00640 43 EEIARQAVEADVHVVGVSSLAGGH-----LTLVPALRKELDKLGRP-DILVVVGGVI-PPQDFDELKEMGVAEIFG 111 (132)
T ss_pred HHHHHHHHHcCCCEEEEcCchhhh-----HHHHHHHHHHHHhcCCC-CCEEEEeCCC-ChHhHHHHHHCCCCEEEC
Confidence 345566678899999998865332 34577888888886542 2333444222 345678899999987644
No 297
>COG0106 HisA Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism]
Probab=80.26 E-value=31 Score=33.21 Aligned_cols=163 Identities=12% Similarity=0.195 Sum_probs=91.7
Q ss_pred CcchHHHHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCCCcEEEeecCCCCCChHHHHHHHHcCccccc
Q 017200 158 DPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFA 237 (375)
Q Consensus 158 d~eEi~~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGldv~~ 237 (375)
.-+.|...|+...+.|++.++|.=-+.- ..++.. =.+++++|.+..+ +.|++- +.. .+.+.++.+.++|++++-
T Consensus 29 y~~~P~~~a~~~~~~Ga~~lHlVDLdgA--~~g~~~-n~~~i~~i~~~~~-~~vQvG-GGI-Rs~~~v~~ll~~G~~rVi 102 (241)
T COG0106 29 YSDDPLEVAKKWSDQGAEWLHLVDLDGA--KAGGPR-NLEAIKEILEATD-VPVQVG-GGI-RSLEDVEALLDAGVARVI 102 (241)
T ss_pred ecCCHHHHHHHHHHcCCcEEEEeecccc--ccCCcc-cHHHHHHHHHhCC-CCEEee-CCc-CCHHHHHHHHHCCCCEEE
Confidence 3468999999999999999998733321 112111 2466777766553 444422 222 278999999999999876
Q ss_pred ccccchHHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCceEEEe------EEEec-CCCHHHHHHHHHHHHHcCCcEEeee
Q 017200 238 HNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTS------IMLGC-GETPDQVVSTMEKVRAAGVDVMTFG 310 (375)
Q Consensus 238 hnlEtv~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~tkt~------imvGl-GET~ee~~etl~~Lrelgvd~v~i~ 310 (375)
.+-=. +. + .+.++.+.+.+|..+.+.-+ -+=|- -.|.-+..+.++.+.+.|+..+-+.
T Consensus 103 iGt~a-------v~-------~-p~~v~~~~~~~g~rivv~lD~r~g~vav~GW~e~s~~~~~~l~~~~~~~g~~~ii~T 167 (241)
T COG0106 103 IGTAA-------VK-------N-PDLVKELCEEYGDRIVVALDARDGKVAVSGWQEDSGVELEELAKRLEEVGLAHILYT 167 (241)
T ss_pred Eecce-------ec-------C-HHHHHHHHHHcCCcEEEEEEccCCccccccccccccCCHHHHHHHHHhcCCCeEEEE
Confidence 54111 11 1 12222222223322222211 22233 3455578889999999999887775
Q ss_pred cCCCCCCCCCCccccCCHHHHHHHHHHHHHhhhhhhccc
Q 017200 311 QYMRPSKRHMPVSEYITPEAFERYRALGMEMGFRYVASG 349 (375)
Q Consensus 311 qYl~P~~~~~~v~~~v~pe~~~~l~~~a~~~gf~~~~sg 349 (375)
.-.+- ++ ...--++.+++++........+||
T Consensus 168 dI~~D---Gt-----l~G~n~~l~~~l~~~~~ipviaSG 198 (241)
T COG0106 168 DISRD---GT-----LSGPNVDLVKELAEAVDIPVIASG 198 (241)
T ss_pred ecccc---cc-----cCCCCHHHHHHHHHHhCcCEEEec
Confidence 33322 21 111225556666666666666666
No 298
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=80.16 E-value=6.3 Score=41.80 Aligned_cols=74 Identities=16% Similarity=0.169 Sum_probs=54.2
Q ss_pred CCcchHHHHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCCC-cEEEeecCCCCCChHHHHHHHHcCccc
Q 017200 157 PDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPN-MLIEALVPDFRGNNGCVREVAKSGLNV 235 (375)
Q Consensus 157 ld~eEi~~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p~-i~Ie~l~pd~~g~~e~l~~L~~aGldv 235 (375)
..+++....++++.+.|++.|+|++-+.. ..+..+.|+.|++.+|. +.|-+ +... +.+..+.+.++|+|.
T Consensus 238 v~~~~~~~ra~~Lv~aGvd~i~vd~a~g~------~~~~~~~i~~ir~~~~~~~~V~a--GnV~-t~e~a~~li~aGAd~ 308 (502)
T PRK07107 238 INTRDYAERVPALVEAGADVLCIDSSEGY------SEWQKRTLDWIREKYGDSVKVGA--GNVV-DREGFRYLAEAGADF 308 (502)
T ss_pred cChhhHHHHHHHHHHhCCCeEeecCcccc------cHHHHHHHHHHHHhCCCCceEEe--cccc-CHHHHHHHHHcCCCE
Confidence 45567788999999999999998733221 34568999999998874 44433 2221 678899999999998
Q ss_pred cccc
Q 017200 236 FAHN 239 (375)
Q Consensus 236 ~~hn 239 (375)
+-.+
T Consensus 309 I~vg 312 (502)
T PRK07107 309 VKVG 312 (502)
T ss_pred EEEC
Confidence 7444
No 299
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=79.97 E-value=17 Score=33.92 Aligned_cols=130 Identities=9% Similarity=0.100 Sum_probs=74.6
Q ss_pred CcchHHHHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCC--C--cEEEeec-CCCC---CChHHHHH--
Q 017200 158 DPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKP--N--MLIEALV-PDFR---GNNGCVRE-- 227 (375)
Q Consensus 158 d~eEi~~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p--~--i~Ie~l~-pd~~---g~~e~l~~-- 227 (375)
+.+.....++++.+.|++.|.++--..+ .. ...+.+.++++.+... + +.|+... +... .+.+.+..
T Consensus 74 ~~~~~~~~v~~a~~~Ga~~v~~~~~~~~-~~---~~~~~~~i~~v~~~~~~~g~~~iie~~~~g~~~~~~~~~~~i~~~~ 149 (235)
T cd00958 74 NDKVLVASVEDAVRLGADAVGVTVYVGS-EE---EREMLEELARVAAEAHKYGLPLIAWMYPRGPAVKNEKDPDLIAYAA 149 (235)
T ss_pred CchhhhcCHHHHHHCCCCEEEEEEecCC-ch---HHHHHHHHHHHHHHHHHcCCCEEEEEeccCCcccCccCHHHHHHHH
Confidence 4556666778888999998866543322 11 2344555555553211 1 3344322 0000 02334443
Q ss_pred --HHHcCcccccccccchHHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEec-C-CCHHHHHHHHHHHHHcC
Q 017200 228 --VAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGC-G-ETPDQVVSTMEKVRAAG 303 (375)
Q Consensus 228 --L~~aGldv~~hnlEtv~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~tkt~imvGl-G-ET~ee~~etl~~Lrelg 303 (375)
..++|+|.+..+..+ -++.++.+.+..+ +++ ++.|- + .|.+++++.+..+.+.|
T Consensus 150 ~~a~~~GaD~Ik~~~~~-----------------~~~~~~~i~~~~~--~pv---v~~GG~~~~~~~~~l~~~~~~~~~G 207 (235)
T cd00958 150 RIGAELGADIVKTKYTG-----------------DAESFKEVVEGCP--VPV---VIAGGPKKDSEEEFLKMVYDAMEAG 207 (235)
T ss_pred HHHHHHCCCEEEecCCC-----------------CHHHHHHHHhcCC--CCE---EEeCCCCCCCHHHHHHHHHHHHHcC
Confidence 667788877653111 2455666665332 333 34453 3 59999999999999999
Q ss_pred CcEEeeecCC
Q 017200 304 VDVMTFGQYM 313 (375)
Q Consensus 304 vd~v~i~qYl 313 (375)
++.+.++..+
T Consensus 208 a~gv~vg~~i 217 (235)
T cd00958 208 AAGVAVGRNI 217 (235)
T ss_pred CcEEEechhh
Confidence 9999998553
No 300
>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.
Probab=79.68 E-value=49 Score=32.87 Aligned_cols=162 Identities=19% Similarity=0.205 Sum_probs=85.3
Q ss_pred ccHHHHHHHHHHHHHhCCCcEEEeec-CC-CCCChHHHHHHHHcCcccccccccchHHHHHHhcCCCCCH-HHHHHHHHH
Q 017200 190 QGSGHFAQTVRKLKELKPNMLIEALV-PD-FRGNNGCVREVAKSGLNVFAHNIETVEELQSAVRDHRANF-KQSLDVLMM 266 (375)
Q Consensus 190 ~G~~~~~~lir~Ik~~~p~i~Ie~l~-pd-~~g~~e~l~~L~~aGldv~~hnlEtv~rl~~~mr~r~~s~-~~~l~vl~~ 266 (375)
.|.+.|.+.++.+++.. +..|-+.+ +. ...-.+.++.+.++|.|.+..|+-..+. -+..+ +... +...++++.
T Consensus 82 ~g~~~~~~~i~~~~~~~-~~pvi~si~g~~~~~~~~~a~~~~~~gad~iElN~s~~~~-~~~~~--g~~~~~~~~eiv~~ 157 (325)
T cd04739 82 LGPEEYLELIRRAKRAV-SIPVIASLNGVSAGGWVDYARQIEEAGADALELNIYALPT-DPDIS--GAEVEQRYLDILRA 157 (325)
T ss_pred cCHHHHHHHHHHHHhcc-CCeEEEEeCCCCHHHHHHHHHHHHhcCCCEEEEeCCCCCC-CCCcc--cchHHHHHHHHHHH
Confidence 35678888887776543 23222222 11 0001356677778899998888754220 01111 2222 445688888
Q ss_pred HHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcCCcEEeeecCC-CCCCC--CCC-cc------ccCCHHHHHHHHH
Q 017200 267 AKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQYM-RPSKR--HMP-VS------EYITPEAFERYRA 336 (375)
Q Consensus 267 ak~~~p~Gl~tkt~imvGlGET~ee~~etl~~Lrelgvd~v~i~qYl-~P~~~--~~~-v~------~~v~pe~~~~l~~ 336 (375)
+++....=+.+|-+. ...++.+..+.+.+.|+|.|.+.+=+ .+.-. ..+ +. ..+.|...+.+++
T Consensus 158 v~~~~~iPv~vKl~p------~~~~~~~~a~~l~~~Gadgi~~~nt~~~~~id~~~~~~~~~~glSG~~~~~~al~~v~~ 231 (325)
T cd04739 158 VKSAVTIPVAVKLSP------FFSALAHMAKQLDAAGADGLVLFNRFYQPDIDLETLEVVPNLLLSSPAEIRLPLRWIAI 231 (325)
T ss_pred HHhccCCCEEEEcCC------CccCHHHHHHHHHHcCCCeEEEEcCcCCCCccccccceecCCCcCCccchhHHHHHHHH
Confidence 877431113344332 22368888888999999988886432 22100 000 00 0122334455556
Q ss_pred HHHHhhhhhhccchhhhhhcchhHHH
Q 017200 337 LGMEMGFRYVASGPMVRSSYKVVGWC 362 (375)
Q Consensus 337 ~a~~~gf~~~~sgp~vrssy~a~~~~ 362 (375)
+.....+..+++| -|+|...|-|++
T Consensus 232 v~~~~~ipIig~G-GI~s~~Da~e~l 256 (325)
T cd04739 232 LSGRVKASLAASG-GVHDAEDVVKYL 256 (325)
T ss_pred HHcccCCCEEEEC-CCCCHHHHHHHH
Confidence 6555566666677 666665555544
No 301
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=79.66 E-value=35 Score=33.09 Aligned_cols=81 Identities=12% Similarity=0.162 Sum_probs=46.2
Q ss_pred HHHHHHHHcCcccccccccchHHHHHHhcC-CCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHH
Q 017200 223 GCVREVAKSGLNVFAHNIETVEELQSAVRD-HRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRA 301 (375)
Q Consensus 223 e~l~~L~~aGldv~~hnlEtv~rl~~~mr~-r~~s~~~~l~vl~~ak~~~p~Gl~tkt~imvGlGET~ee~~etl~~Lre 301 (375)
+..+.+.++|.|.+..|+-.-. .+.-.. -..+.+...++++.+++.. ++ -+++-++-+.+|..+.++.+.+
T Consensus 106 ~~a~~~~~~G~d~iElN~~cP~--~~~~g~~~~~~~~~~~eiv~~vr~~~--~~----Pv~vKl~~~~~~~~~~a~~~~~ 177 (296)
T cd04740 106 EVAEKLADAGADAIELNISCPN--VKGGGMAFGTDPEAVAEIVKAVKKAT--DV----PVIVKLTPNVTDIVEIARAAEE 177 (296)
T ss_pred HHHHHHHHcCCCEEEEECCCCC--CCCCcccccCCHHHHHHHHHHHHhcc--CC----CEEEEeCCCchhHHHHHHHHHH
Confidence 3455566667776666543211 000000 0134566677888888742 12 2333343345578888999999
Q ss_pred cCCcEEeeec
Q 017200 302 AGVDVMTFGQ 311 (375)
Q Consensus 302 lgvd~v~i~q 311 (375)
.|+|.+.+.+
T Consensus 178 ~G~d~i~~~n 187 (296)
T cd04740 178 AGADGLTLIN 187 (296)
T ss_pred cCCCEEEEEC
Confidence 9999887753
No 302
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed
Probab=79.65 E-value=40 Score=33.51 Aligned_cols=170 Identities=14% Similarity=0.206 Sum_probs=92.4
Q ss_pred CcchHHHHHHHHHhcCCcEEEEEeee---CCCCCccc-HHHHHHHHHHHHHhCCCcEEEe-ecCCCCCChHHHHHHHHcC
Q 017200 158 DPDEPTNVAEAIASWGLDYVVITSVD---RDDLADQG-SGHFAQTVRKLKELKPNMLIEA-LVPDFRGNNGCVREVAKSG 232 (375)
Q Consensus 158 d~eEi~~~a~al~~~G~~eIvLTsgd---r~dl~d~G-~~~~~~lir~Ik~~~p~i~Ie~-l~pd~~g~~e~l~~L~~aG 232 (375)
+++|..+.++.+.+.|++.|.|=-.- ..+..... .+.+.++++.|++.. ++.|-+ +.|++....+..+.+.++|
T Consensus 112 ~~~e~~~~a~~~~~agad~ielN~scpp~~~~~~g~~~~~~~~eil~~v~~~~-~iPV~vKl~p~~~~~~~~a~~l~~~G 190 (334)
T PRK07565 112 SAGGWVDYARQIEQAGADALELNIYYLPTDPDISGAEVEQRYLDILRAVKSAV-SIPVAVKLSPYFSNLANMAKRLDAAG 190 (334)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCCCCCCCCCccccHHHHHHHHHHHHHhcc-CCcEEEEeCCCchhHHHHHHHHHHcC
Confidence 35788888998888899988883221 11111000 235778899998754 232222 4555422356677788999
Q ss_pred cccccc-c--ccc-hH-HHHH-H----hcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEec--CCCHHHHHHHHHHHH
Q 017200 233 LNVFAH-N--IET-VE-ELQS-A----VRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGC--GETPDQVVSTMEKVR 300 (375)
Q Consensus 233 ldv~~h-n--lEt-v~-rl~~-~----mr~r~~s~~~~l~vl~~ak~~~p~Gl~tkt~imvGl--GET~ee~~etl~~Lr 300 (375)
+|.+.. | ... ++ +... . +. ..+.....++.+..+++.. ++. |+|. -.|.+|..+.|.
T Consensus 191 ~dgI~~~n~~~~~~~d~~~~~~~~~~gls-g~~~~~~al~~v~~~~~~~--~ip-----Iig~GGI~s~~Da~e~l~--- 259 (334)
T PRK07565 191 ADGLVLFNRFYQPDIDLETLEVVPGLVLS-TPAELRLPLRWIAILSGRV--GAD-----LAATTGVHDAEDVIKMLL--- 259 (334)
T ss_pred CCeEEEECCcCCCCcChhhcccccCCCCC-CchhhhHHHHHHHHHHhhc--CCC-----EEEECCCCCHHHHHHHHH---
Confidence 996532 2 110 11 0000 0 11 1223345567777776632 122 2233 478888888873
Q ss_pred HcCCcEEeeecCCCCCCCCCCccccCCHHHHHHHHHHHHHhhhhhh
Q 017200 301 AAGVDVMTFGQYMRPSKRHMPVSEYITPEAFERYRALGMEMGFRYV 346 (375)
Q Consensus 301 elgvd~v~i~qYl~P~~~~~~v~~~v~pe~~~~l~~~a~~~gf~~~ 346 (375)
+|.+.|-++.-+- ..+. .+..+-.+.|.++....||..+
T Consensus 260 -aGA~~V~v~t~~~--~~g~----~~~~~i~~~L~~~l~~~g~~~i 298 (334)
T PRK07565 260 -AGADVVMIASALL--RHGP----DYIGTILRGLEDWMERHGYESL 298 (334)
T ss_pred -cCCCceeeehHHh--hhCc----HHHHHHHHHHHHHHHHcCCCCH
Confidence 7888888762210 0111 1223345667777777777554
No 303
>COG0502 BioB Biotin synthase and related enzymes [Coenzyme metabolism]
Probab=79.47 E-value=0.55 Score=47.13 Aligned_cols=38 Identities=29% Similarity=0.418 Sum_probs=29.2
Q ss_pred CcCCCCCCCCCCCCCCcchHHHHHHHHH-hcCCcEEEEEee
Q 017200 143 CRFCNVKTSRAPPPPDPDEPTNVAEAIA-SWGLDYVVITSV 182 (375)
Q Consensus 143 C~FC~v~~~r~~~~ld~eEi~~~a~al~-~~G~~eIvLTsg 182 (375)
=+||.+...++ ...+++++.+.++.++ +.|+ +++++-|
T Consensus 102 ~r~c~~aagr~-~~~~~~~i~~~v~~Vk~~~~l-e~c~slG 140 (335)
T COG0502 102 TRFCMGAAGRG-PGRDMEEVVEAIKAVKEELGL-EVCASLG 140 (335)
T ss_pred ceEEEEEeccC-CCccHHHHHHHHHHHHHhcCc-HHhhccC
Confidence 36888888776 4578899999999988 7785 6666655
No 304
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=79.35 E-value=10 Score=37.78 Aligned_cols=134 Identities=23% Similarity=0.312 Sum_probs=76.7
Q ss_pred chHHHHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCCCcEEEeecCCCCCChHHHHHHHHcCccccccc
Q 017200 160 DEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHN 239 (375)
Q Consensus 160 eEi~~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGldv~~hn 239 (375)
++..+.++++.+.|++.|+|...... ..+..++|+.|++..|++.|-+ ++. .+.+..+.+.++|+|.+-.+
T Consensus 93 ~~~~~~~~~l~eagv~~I~vd~~~G~------~~~~~~~i~~ik~~~p~v~Vi~--G~v-~t~~~A~~l~~aGaD~I~vg 163 (325)
T cd00381 93 EDDKERAEALVEAGVDVIVIDSAHGH------SVYVIEMIKFIKKKYPNVDVIA--GNV-VTAEAARDLIDAGADGVKVG 163 (325)
T ss_pred hhHHHHHHHHHhcCCCEEEEECCCCC------cHHHHHHHHHHHHHCCCceEEE--CCC-CCHHHHHHHHhcCCCEEEEC
Confidence 34567788889999999998764321 2457889999999888655433 332 26788999999999987532
Q ss_pred cc-chHHHHHHhcC-CCCCHHHHHHHHHHHHHhCCCCceEEEeEEE-ecCCCHHHHHHHHHHHHHcCCcEEeeecCC
Q 017200 240 IE-TVEELQSAVRD-HRANFKQSLDVLMMAKDYVPAGTLTKTSIML-GCGETPDQVVSTMEKVRAAGVDVMTFGQYM 313 (375)
Q Consensus 240 lE-tv~rl~~~mr~-r~~s~~~~l~vl~~ak~~~p~Gl~tkt~imv-GlGET~ee~~etl~~Lrelgvd~v~i~qYl 313 (375)
+- ......+.... ...++.-..++.+.+++. +++ +|. |=--+..|+...| .+|.+.|-+|..|
T Consensus 164 ~g~G~~~~t~~~~g~g~p~~~~i~~v~~~~~~~---~vp----VIA~GGI~~~~di~kAl----a~GA~~VmiGt~f 229 (325)
T cd00381 164 IGPGSICTTRIVTGVGVPQATAVADVAAAARDY---GVP----VIADGGIRTSGDIVKAL----AAGADAVMLGSLL 229 (325)
T ss_pred CCCCcCcccceeCCCCCCHHHHHHHHHHHHhhc---CCc----EEecCCCCCHHHHHHHH----HcCCCEEEecchh
Confidence 11 11000000100 112333333444444331 233 232 1123667777666 3888888776554
No 305
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=79.15 E-value=45 Score=32.39 Aligned_cols=170 Identities=15% Similarity=0.136 Sum_probs=93.5
Q ss_pred CcchHHHHHHHHHhcC--CcEEEEEeee--C----CCCCcccHHHHHHHHHHHHHhCC-CcEEEeecCCCCCChHHHHHH
Q 017200 158 DPDEPTNVAEAIASWG--LDYVVITSVD--R----DDLADQGSGHFAQTVRKLKELKP-NMLIEALVPDFRGNNGCVREV 228 (375)
Q Consensus 158 d~eEi~~~a~al~~~G--~~eIvLTsgd--r----~dl~d~G~~~~~~lir~Ik~~~p-~i~Ie~l~pd~~g~~e~l~~L 228 (375)
+++++.+.++.+.+.+ ++.|-|--+- . +.+. +..+.+.++++++++... -+.+++ .|+.....+..+.+
T Consensus 101 ~~~~~~~~a~~~~~~~~~~d~ielN~~cP~~~~~g~~l~-~~~~~~~eiv~~vr~~~~~pv~vKi-~~~~~~~~~~a~~l 178 (300)
T TIGR01037 101 SVEEFAEVAEKLEKAPPYVDAYELNLSCPHVKGGGIAIG-QDPELSADVVKAVKDKTDVPVFAKL-SPNVTDITEIAKAA 178 (300)
T ss_pred CHHHHHHHHHHHHhccCccCEEEEECCCCCCCCCccccc-cCHHHHHHHHHHHHHhcCCCEEEEC-CCChhhHHHHHHHH
Confidence 4789999999888763 7888775441 1 1111 125678899999987641 134443 34432124556778
Q ss_pred HHcCccccc-cc-c-------cchH-HHHH---HhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHH
Q 017200 229 AKSGLNVFA-HN-I-------ETVE-ELQS---AVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVST 295 (375)
Q Consensus 229 ~~aGldv~~-hn-l-------Etv~-rl~~---~mr~r~~s~~~~l~vl~~ak~~~p~Gl~tkt~imvGlGET~ee~~et 295 (375)
.++|+|.+. || + ++.. .+.. -+. ....+...++.+..+++..+ +. =|-.|=-.|.+|..+.
T Consensus 179 ~~~G~d~i~v~nt~~~~~~~~~~~~~~~~~~~gg~s-g~~~~~~~l~~v~~i~~~~~--ip---vi~~GGI~s~~da~~~ 252 (300)
T TIGR01037 179 EEAGADGLTLINTLRGMKIDIKTGKPILANKTGGLS-GPAIKPIALRMVYDVYKMVD--IP---IIGVGGITSFEDALEF 252 (300)
T ss_pred HHcCCCEEEEEccCCccccccccCceeeCCCCcccc-chhhhHHHHHHHHHHHhcCC--CC---EEEECCCCCHHHHHHH
Confidence 899999875 22 1 1100 0000 011 11122234667777776421 22 1223445788888877
Q ss_pred HHHHHHcCCcEEeeecCCCCCCCCCCccccCCHHHHHHHHHHHHHhhhhhh
Q 017200 296 MEKVRAAGVDVMTFGQYMRPSKRHMPVSEYITPEAFERYRALGMEMGFRYV 346 (375)
Q Consensus 296 l~~Lrelgvd~v~i~qYl~P~~~~~~v~~~v~pe~~~~l~~~a~~~gf~~~ 346 (375)
| +.|.|.|-++.-+ -. -| ++...-.+.|.++..+.||..+
T Consensus 253 l----~~GAd~V~igr~~---l~-~p---~~~~~i~~~l~~~~~~~g~~~~ 292 (300)
T TIGR01037 253 L----MAGASAVQVGTAV---YY-RG---FAFKKIIEGLIAFLKAEGFTSI 292 (300)
T ss_pred H----HcCCCceeecHHH---hc-Cc---hHHHHHHHHHHHHHHHcCCCCH
Confidence 7 3689988887221 10 11 2223456667777788888654
No 306
>COG4822 CbiK Cobalamin biosynthesis protein CbiK, Co2+ chelatase [Coenzyme metabolism]
Probab=79.14 E-value=41 Score=32.10 Aligned_cols=176 Identities=14% Similarity=0.143 Sum_probs=99.6
Q ss_pred CCCcchHHHHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCCCcEEEeecCCCCCChHHHHHHHHcCccc
Q 017200 156 PPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNV 235 (375)
Q Consensus 156 ~ld~eEi~~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGldv 235 (375)
..+.+.|.+....+++.|+++|.+++-+- +|..-.+.+...|...+..+..+.|. -|-+- ..+..+.+.++=-|.
T Consensus 56 gi~~dTP~~aL~klk~~gy~eviiQ~lhi--IpG~EyEklvr~V~~~~~dF~~lkig--~PlLy-~k~DYe~~v~aik~~ 130 (265)
T COG4822 56 GIDFDTPIQALNKLKDQGYEEVIIQPLHI--IPGIEYEKLVREVNKYSNDFKRLKIG--RPLLY-YKNDYEICVEAIKDQ 130 (265)
T ss_pred CcccCCHHHHHHHHHHccchheeeeeeee--cCchHHHHHHHHHHHHhhhhheeecC--Cceee-chhhHHHHHHHHHHh
Confidence 47889999999999999999999998753 22111334444444444444333332 23110 112233333322222
Q ss_pred cc-ccccchHHHHHHhcC-CCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcCCcEEeeecCC
Q 017200 236 FA-HNIETVEELQSAVRD-HRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQYM 313 (375)
Q Consensus 236 ~~-hnlEtv~rl~~~mr~-r~~s~~~~l~vl~~ak~~~p~Gl~tkt~imvGlGET~ee~~etl~~Lrelgvd~v~i~qYl 313 (375)
++ .+- ++..=.|+. -.+....+...|+..-.. .|+ ..+.|+--|.--++-..++.|++.++.-|++.++|
T Consensus 131 ~ppl~k---~e~~vlmgHGt~h~s~~~YacLd~~~~~--~~f---~~v~v~~ve~yP~~d~vi~~l~~~~~~~v~L~PlM 202 (265)
T COG4822 131 IPPLNK---DEILVLMGHGTDHHSNAAYACLDHVLDE--YGF---DNVFVAAVEGYPLVDTVIEYLRKNGIKEVHLIPLM 202 (265)
T ss_pred cCCcCc---CeEEEEEecCCCccHHHHHHHHHHHHHh--cCC---CceEEEEecCCCcHHHHHHHHHHcCCceEEEeeeE
Confidence 32 110 111112331 123344445556555442 232 34556666888889999999999999999988776
Q ss_pred CCCCCCCCccccCCHHHHHHHHHHHHHhhhhhh
Q 017200 314 RPSKRHMPVSEYITPEAFERYRALGMEMGFRYV 346 (375)
Q Consensus 314 ~P~~~~~~v~~~v~pe~~~~l~~~a~~~gf~~~ 346 (375)
--...|.. .-...+.-+.|+.+-.+-||...
T Consensus 203 lvAG~Ha~--nDMasddedswk~il~~~G~~v~ 233 (265)
T COG4822 203 LVAGDHAK--NDMASDDEDSWKNILEKNGFKVE 233 (265)
T ss_pred Eeechhhh--hhhcccchHHHHHHHHhCCceeE
Confidence 33334432 11223446889999999999654
No 307
>PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional
Probab=79.12 E-value=7.5 Score=36.71 Aligned_cols=83 Identities=23% Similarity=0.371 Sum_probs=56.3
Q ss_pred CCcchHHHHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCCCcEEEe-ecCCCCCChHHHHHHHHcCccc
Q 017200 157 PDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEA-LVPDFRGNNGCVREVAKSGLNV 235 (375)
Q Consensus 157 ld~eEi~~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p~i~Ie~-l~pd~~g~~e~l~~L~~aGldv 235 (375)
.|+..+.+.++.+.+.|++++++==-|..-.|...+. .+.++.|++..|++.+.+ +.++- ....++.+.++|+|.
T Consensus 16 ~d~~~l~~~~~~l~~~~~~~~H~DimDg~fvpn~~~G--~~~v~~lr~~~~~~~lDvHLm~~~--p~~~i~~~~~~Gad~ 91 (228)
T PTZ00170 16 ADFSKLADEAQDVLSGGADWLHVDVMDGHFVPNLSFG--PPVVKSLRKHLPNTFLDCHLMVSN--PEKWVDDFAKAGASQ 91 (228)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEEecccCccCCCcCcC--HHHHHHHHhcCCCCCEEEEECCCC--HHHHHHHHHHcCCCE
Confidence 4666788899999999999998866664444432111 467888887766654433 22321 345678999999999
Q ss_pred ccccccch
Q 017200 236 FAHNIETV 243 (375)
Q Consensus 236 ~~hnlEtv 243 (375)
+....|+.
T Consensus 92 itvH~ea~ 99 (228)
T PTZ00170 92 FTFHIEAT 99 (228)
T ss_pred EEEeccCC
Confidence 88766653
No 308
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=79.02 E-value=31 Score=34.57 Aligned_cols=54 Identities=20% Similarity=0.298 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHhCCCCceEE--EeEEEec--CCCHHHHHHHHHHHHHcCCcEEeeec
Q 017200 258 KQSLDVLMMAKDYVPAGTLTK--TSIMLGC--GETPDQVVSTMEKVRAAGVDVMTFGQ 311 (375)
Q Consensus 258 ~~~l~vl~~ak~~~p~Gl~tk--t~imvGl--GET~ee~~etl~~Lrelgvd~v~i~q 311 (375)
+--+++++.+++..+..+.+. .+..=.. |.+.+|.++.++.|.+.|+|.+++..
T Consensus 188 r~~~eiv~aIR~~vG~d~~v~iRi~~~D~~~~g~~~~e~~~i~~~Le~~G~d~i~vs~ 245 (353)
T cd02930 188 RFPVEIVRAVRAAVGEDFIIIYRLSMLDLVEGGSTWEEVVALAKALEAAGADILNTGI 245 (353)
T ss_pred HHHHHHHHHHHHHcCCCceEEEEecccccCCCCCCHHHHHHHHHHHHHcCCCEEEeCC
Confidence 344677888888764433332 1111011 46889999999999999999999853
No 309
>PF02581 TMP-TENI: Thiamine monophosphate synthase/TENI; InterPro: IPR003733 Thiamine monophosphate synthase (TMP) (2.5.1.3 from EC) catalyzes the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl)thiazole phosphate to yield thiamine phosphate in the thiamine biosynthesis pathway []. TENI, a protein from Bacillus subtilis that regulates the production of several extracellular enzymes by reducing alkaline protease production belongs to this group [].; GO: 0004789 thiamine-phosphate diphosphorylase activity, 0009228 thiamine biosynthetic process; PDB: 3NL5_A 3NL2_A 3NM1_A 3NM3_C 3NL6_B 3NL3_A 3CEU_A 3O63_B 3QH2_C 1YAD_D ....
Probab=78.98 E-value=41 Score=30.18 Aligned_cols=147 Identities=18% Similarity=0.238 Sum_probs=72.1
Q ss_pred CcchHHHHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCCCcEEEeecCCCCCChHHHHHHHHcCccccc
Q 017200 158 DPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFA 237 (375)
Q Consensus 158 d~eEi~~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGldv~~ 237 (375)
..++..+.++++.+.|++.|+|=- +++. ...+.+.++.|.+....-.+.+++-+ ..+...+.|+|.+.
T Consensus 10 ~~~~~~~~l~~~~~~gv~~v~lR~---k~~~---~~~~~~~a~~l~~~~~~~~~~liin~------~~~la~~~~~dGvH 77 (180)
T PF02581_consen 10 CGDDFLEQLEAALAAGVDLVQLRE---KDLS---DEELLELARRLAELCQKYGVPLIIND------RVDLALELGADGVH 77 (180)
T ss_dssp STCHHHHHHHHHHHTT-SEEEEE----SSS----HHHHHHHHHHHHHHHHHTTGCEEEES-------HHHHHHCT-SEEE
T ss_pred hcchHHHHHHHHHHCCCcEEEEcC---CCCC---ccHHHHHHHHHHHHhhcceEEEEecC------CHHHHHhcCCCEEE
Confidence 356788888899999998887642 2222 34566666665543211111223222 34556667777765
Q ss_pred ccccchHHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcCCcEEeeecCCCCCC
Q 017200 238 HNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQYMRPSK 317 (375)
Q Consensus 238 hnlEtv~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~tkt~imvGlGET~ee~~etl~~Lrelgvd~v~i~qYl~P~~ 317 (375)
.+.+-.+ . ..+++..+.+..+.++ --+.+| +..+.+.++|++.+++.+ |+.
T Consensus 78 l~~~~~~------------~-------~~~r~~~~~~~~ig~S-----~h~~~e----~~~a~~~g~dYv~~gpvf-~T~ 128 (180)
T PF02581_consen 78 LGQSDLP------------P-------AEARKLLGPDKIIGAS-----CHSLEE----AREAEELGADYVFLGPVF-PTS 128 (180)
T ss_dssp EBTTSSS------------H-------HHHHHHHTTTSEEEEE-----ESSHHH----HHHHHHCTTSEEEEETSS---S
T ss_pred ecccccc------------h-------HHhhhhcccceEEEee-----cCcHHH----HHHhhhcCCCEEEECCcc-CCC
Confidence 5422111 1 1111111122333333 478877 455568999999999876 322
Q ss_pred CCCCccccCCHHHHHHHHHHHHHhhhhhhccc
Q 017200 318 RHMPVSEYITPEAFERYRALGMEMGFRYVASG 349 (375)
Q Consensus 318 ~~~~v~~~v~pe~~~~l~~~a~~~gf~~~~sg 349 (375)
.+ |-. +|-..+.++++....-...+|.|
T Consensus 129 sk-~~~---~~~g~~~l~~~~~~~~~pv~AlG 156 (180)
T PF02581_consen 129 SK-PGA---PPLGLDGLREIARASPIPVYALG 156 (180)
T ss_dssp SS-SS----TTCHHHHHHHHHHHTSSCEEEES
T ss_pred CC-ccc---cccCHHHHHHHHHhCCCCEEEEc
Confidence 11 111 23344455555544444444444
No 310
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=78.90 E-value=65 Score=34.25 Aligned_cols=170 Identities=15% Similarity=0.166 Sum_probs=92.0
Q ss_pred CcchH-HHHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHh---------CCCcEEEeecCCCCCChHHHHH
Q 017200 158 DPDEP-TNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKEL---------KPNMLIEALVPDFRGNNGCVRE 227 (375)
Q Consensus 158 d~eEi-~~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~---------~p~i~Ie~l~pd~~g~~e~l~~ 227 (375)
++++. .+..+.+.+.++..+.++-.+. .+ .|.-...++++.+..- ..++++.+-++-.....|.++.
T Consensus 179 ~~~~sL~eAl~~m~~~~~~~LPVVD~~g-~L--vGvITr~DIlk~~~~p~~~~~~~d~~~~l~vgaavg~~~~~~~r~~~ 255 (505)
T PLN02274 179 PAGIDLEEAEAVLKDSKKGKLPLVNEDG-EL--VDLVTRTDVKRVKGYPKLGKPSVGKDGKLLVGAAIGTRESDKERLEH 255 (505)
T ss_pred CCCCCHHHHHHHHHHcCCCEEEEEcCCC-eE--EEEEEHHHHHHHhhCcCccccccCCCCCEEEEEEEcCCccHHHHHHH
Confidence 44444 4445566777888887763211 11 1333344555555321 1245565544432224789999
Q ss_pred HHHcCcccccccccchHHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcCCcEE
Q 017200 228 VAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVM 307 (375)
Q Consensus 228 L~~aGldv~~hnlEtv~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~tkt~imvGlGET~ee~~etl~~Lrelgvd~v 307 (375)
|.++|+|++.. ++. .++ -...++.++++|+.+|. + .+|.|=--|.++.. .+.+.|+|.|
T Consensus 256 l~~ag~d~i~i--D~~---------~g~-~~~~~~~i~~ik~~~p~-~----~vi~g~v~t~e~a~----~a~~aGaD~i 314 (505)
T PLN02274 256 LVKAGVDVVVL--DSS---------QGD-SIYQLEMIKYIKKTYPE-L----DVIGGNVVTMYQAQ----NLIQAGVDGL 314 (505)
T ss_pred HHHcCCCEEEE--eCC---------CCC-cHHHHHHHHHHHHhCCC-C----cEEEecCCCHHHHH----HHHHcCcCEE
Confidence 99999999864 221 233 34457889999987764 2 34444335777754 4456999998
Q ss_pred eeecCCCCC----CCC-CCccccCCHHHHHHHHHHHHHhhhhhhccchhhhhh
Q 017200 308 TFGQYMRPS----KRH-MPVSEYITPEAFERYRALGMEMGFRYVASGPMVRSS 355 (375)
Q Consensus 308 ~i~qYl~P~----~~~-~~v~~~v~pe~~~~l~~~a~~~gf~~~~sgp~vrss 355 (375)
-++ +.|+ ++. ..+-. .....+..+.+++...+....+.| -+|++
T Consensus 315 ~vg--~g~G~~~~t~~~~~~g~-~~~~~i~~~~~~~~~~~vpVIadG-GI~~~ 363 (505)
T PLN02274 315 RVG--MGSGSICTTQEVCAVGR-GQATAVYKVASIAAQHGVPVIADG-GISNS 363 (505)
T ss_pred EEC--CCCCccccCccccccCC-CcccHHHHHHHHHHhcCCeEEEeC-CCCCH
Confidence 665 2232 111 11111 112345556666666555555555 34443
No 311
>PRK07315 fructose-bisphosphate aldolase; Provisional
Probab=78.82 E-value=54 Score=32.33 Aligned_cols=138 Identities=13% Similarity=0.145 Sum_probs=80.1
Q ss_pred CCcchHHHHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCC-CcEEEeecCCCCCChHHHHHHHHcCccc
Q 017200 157 PDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKP-NMLIEALVPDFRGNNGCVREVAKSGLNV 235 (375)
Q Consensus 157 ld~eEi~~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p-~i~Ie~l~pd~~g~~e~l~~L~~aGldv 235 (375)
.+.+.+...++++.+.+.-=|+-++...-++. +|...+..+++.+.+... .+.| ++.-|+. +.+.+....++|.++
T Consensus 26 ~n~e~~~avi~aAe~~~sPvIlq~s~~~~~~~-~~~~~~~~~~~~~a~~~~~~vPV-~lHLDH~-~~~~i~~ai~~GftS 102 (293)
T PRK07315 26 NNLEWTQAILRAAEAKKAPVLIQTSMGAAKYM-GGYKVCKNLIENLVESMGITVPV-AIHLDHG-HYEDALECIEVGYTS 102 (293)
T ss_pred CCHHHHHHHHHHHHHHCCCEEEEcCccHHhhc-CcHHHHHHHHHHHHHHcCCCCcE-EEECCCC-CHHHHHHHHHcCCCE
Confidence 35677778888888888877776665433332 236678888888776541 2333 2556775 778888889999887
Q ss_pred ccccccchHHHHHHhcCCCCCHHHHHHHHHHHHHhCC-CCce--EEEeEEEe-----cCCCH-HHHHHHHHHHHHcCCcE
Q 017200 236 FAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVP-AGTL--TKTSIMLG-----CGETP-DQVVSTMEKVRAAGVDV 306 (375)
Q Consensus 236 ~~hnlEtv~rl~~~mr~r~~s~~~~l~vl~~ak~~~p-~Gl~--tkt~imvG-----lGET~-ee~~etl~~Lrelgvd~ 306 (375)
+-. +....++++-++..+.++++.. .|+. ...+-|.| .|++. .+..+..++. +.|+|+
T Consensus 103 Vm~------------d~S~l~~eEni~~t~~v~~~a~~~gv~vE~ElG~i~g~ed~~~g~s~~t~peea~~f~-~tgvD~ 169 (293)
T PRK07315 103 IMF------------DGSHLPVEENLKLAKEVVEKAHAKGISVEAEVGTIGGEEDGIIGKGELAPIEDAKAMV-ETGIDF 169 (293)
T ss_pred EEE------------cCCCCCHHHHHHHHHHHHHHHHHcCCEEEEecCcccCcCccccCccCCCCHHHHHHHH-HcCCCE
Confidence 653 1123344444444444333211 2332 23334433 13322 3444555566 679999
Q ss_pred Eeee
Q 017200 307 MTFG 310 (375)
Q Consensus 307 v~i~ 310 (375)
+.++
T Consensus 170 LAv~ 173 (293)
T PRK07315 170 LAAG 173 (293)
T ss_pred Eeec
Confidence 8776
No 312
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=78.78 E-value=7.3 Score=40.24 Aligned_cols=134 Identities=19% Similarity=0.245 Sum_probs=79.5
Q ss_pred hHHHHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCCCcEEEeecCCCCCChHHHHHHHHcCcccccccc
Q 017200 161 EPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHNI 240 (375)
Q Consensus 161 Ei~~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGldv~~hnl 240 (375)
+-.+.++++.+.|++-|+|-+.+.. ...+.++|+.||+.+|++.| +.++.. +.+....+.++|+|.+..++
T Consensus 153 ~~~~~v~~lv~aGvDvI~iD~a~g~------~~~~~~~v~~ik~~~p~~~v--i~g~V~-T~e~a~~l~~aGaD~I~vG~ 223 (404)
T PRK06843 153 DTIERVEELVKAHVDILVIDSAHGH------STRIIELVKKIKTKYPNLDL--IAGNIV-TKEAALDLISVGADCLKVGI 223 (404)
T ss_pred HHHHHHHHHHhcCCCEEEEECCCCC------ChhHHHHHHHHHhhCCCCcE--EEEecC-CHHHHHHHHHcCCCEEEECC
Confidence 4568899999999999998555432 34588999999999998654 222322 67888999999999876554
Q ss_pred cc-hHHHHHHhcCCC-CCHHHHHHHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcCCcEEeeecCC
Q 017200 241 ET-VEELQSAVRDHR-ANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQYM 313 (375)
Q Consensus 241 Et-v~rl~~~mr~r~-~s~~~~l~vl~~ak~~~p~Gl~tkt~imvGlGET~ee~~etl~~Lrelgvd~v~i~qYl 313 (375)
.. +--..+.+..-+ ..+.-..++-+.+++ .++++ |.=|=--+.+|+...| .+|.+.|-+|..+
T Consensus 224 g~Gs~c~tr~~~g~g~p~ltai~~v~~~~~~---~~vpV---IAdGGI~~~~Di~KAL----alGA~aVmvGs~~ 288 (404)
T PRK06843 224 GPGSICTTRIVAGVGVPQITAICDVYEVCKN---TNICI---IADGGIRFSGDVVKAI----AAGADSVMIGNLF 288 (404)
T ss_pred CCCcCCcceeecCCCCChHHHHHHHHHHHhh---cCCeE---EEeCCCCCHHHHHHHH----HcCCCEEEEccee
Confidence 21 100011111111 122222233333332 12322 1122236888888777 4788888787554
No 313
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4.2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....
Probab=78.61 E-value=6.4 Score=38.21 Aligned_cols=139 Identities=16% Similarity=0.251 Sum_probs=61.9
Q ss_pred hHHHHHHHHcCcccccccccc---------hH-HHHHHhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecCCCHHH
Q 017200 222 NGCVREVAKSGLNVFAHNIET---------VE-ELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQ 291 (375)
Q Consensus 222 ~e~l~~L~~aGldv~~hnlEt---------v~-rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~tkt~imvGlGET~ee 291 (375)
.+.++.|.++|+|++..++-. .. .-.+.+. .+.+.++.++.++.+++..+. +. -++.+.-.+.-.
T Consensus 27 ~~~~~~l~~~GaD~iEiGiPfSDP~ADGpvIq~A~~rAL~-~G~~~~~~~~~~~~ir~~~~~---~p-ivlm~Y~N~i~~ 101 (259)
T PF00290_consen 27 LEILKALEEAGADIIEIGIPFSDPVADGPVIQKASQRALK-NGFTLEKIFELVKEIRKKEPD---IP-IVLMTYYNPIFQ 101 (259)
T ss_dssp HHHHHHHHHTTBSSEEEE--SSSCTTSSHHHHHHHHHHHH-TT--HHHHHHHHHHHHHHCTS---SE-EEEEE-HHHHHH
T ss_pred HHHHHHHHHcCCCEEEECCCCCCCCCCCHHHHHHHHHHHH-CCCCHHHHHHHHHHHhccCCC---CC-EEEEeeccHHhc
Confidence 455566666666665544311 11 1222334 466777777777777732222 11 122233222211
Q ss_pred --HHHHHHHHHHcCCcEEeeecCCCCC----------CCCCCccccCCH-HHHHHHHHHHH-Hhhhhhhccchhh---hh
Q 017200 292 --VVSTMEKVRAAGVDVMTFGQYMRPS----------KRHMPVSEYITP-EAFERYRALGM-EMGFRYVASGPMV---RS 354 (375)
Q Consensus 292 --~~etl~~Lrelgvd~v~i~qYl~P~----------~~~~~v~~~v~p-e~~~~l~~~a~-~~gf~~~~sgp~v---rs 354 (375)
+.+.++.+++.|+|-+-+ +=+.+. ..++....+++| ...++++.++. +-||.|+.|-.-| |+
T Consensus 102 ~G~e~F~~~~~~aGvdGlIi-pDLP~ee~~~~~~~~~~~gl~~I~lv~p~t~~~Ri~~i~~~a~gFiY~vs~~GvTG~~~ 180 (259)
T PF00290_consen 102 YGIERFFKEAKEAGVDGLII-PDLPPEESEELREAAKKHGLDLIPLVAPTTPEERIKKIAKQASGFIYLVSRMGVTGSRT 180 (259)
T ss_dssp H-HHHHHHHHHHHTEEEEEE-TTSBGGGHHHHHHHHHHTT-EEEEEEETTS-HHHHHHHHHH-SSEEEEESSSSSSSTTS
T ss_pred cchHHHHHHHHHcCCCEEEE-cCCChHHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHhCCcEEEeeccCCCCCCcc
Confidence 233556666666665554 112110 123333333444 34556666553 5899998754443 55
Q ss_pred hcch-hHHHHHHH
Q 017200 355 SYKV-VGWCYYLI 366 (375)
Q Consensus 355 sy~a-~~~~~~~~ 366 (375)
+... -+.+++.|
T Consensus 181 ~~~~~l~~~i~~i 193 (259)
T PF00290_consen 181 ELPDELKEFIKRI 193 (259)
T ss_dssp SCHHHHHHHHHHH
T ss_pred cchHHHHHHHHHH
Confidence 4332 23444443
No 314
>KOG2368 consensus Hydroxymethylglutaryl-CoA lyase [Energy production and conversion; Amino acid transport and metabolism]
Probab=78.57 E-value=31 Score=33.24 Aligned_cols=145 Identities=16% Similarity=0.253 Sum_probs=94.8
Q ss_pred CCcchHHHHHHHHHhcCCcEEEEEeeeCCCC-CcccHHHHHHHHHHHHHhCCCcEEEeecCCCCCChHHHHHHHHcCccc
Q 017200 157 PDPDEPTNVAEAIASWGLDYVVITSVDRDDL-ADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNV 235 (375)
Q Consensus 157 ld~eEi~~~a~al~~~G~~eIvLTsgdr~dl-~d~G~~~~~~lir~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGldv 235 (375)
++.+--++.+..+.+-|+.-|--||--.+.. |. ...-.++++.|++ +|++...+|+|++. -++.-.++|..-
T Consensus 37 vpt~vKveLI~~Lse~Gl~~vEtTSFVSpKWVPQ--l~D~~ev~k~i~~-~~Gv~yPVLtPNlk----Gf~~AvaaGa~E 109 (316)
T KOG2368|consen 37 VPTEVKVELIDRLSECGLQVVETTSFVSPKWVPQ--LADHNEVMKGIRK-FPGVSYPVLTPNLK----GFEAAVAAGAEE 109 (316)
T ss_pred CCchHHHHHHHHHHHcCCceeeeecccCcccccc--ccchHHHHHhhhc-CCCccccccCcchh----hHHHHHhcCcee
Confidence 3444446788899999999998888643332 32 1224678888864 78999999999764 466677788765
Q ss_pred ccccccchHHHHHHhcCCCCCHHH----HHHHHHHHHHhCCCCceE--EEeEEEec-C---CCHHHHHHHHHHHHHcCCc
Q 017200 236 FAHNIETVEELQSAVRDHRANFKQ----SLDVLMMAKDYVPAGTLT--KTSIMLGC-G---ETPDQVVSTMEKVRAAGVD 305 (375)
Q Consensus 236 ~~hnlEtv~rl~~~mr~r~~s~~~----~l~vl~~ak~~~p~Gl~t--kt~imvGl-G---ET~ee~~etl~~Lrelgvd 305 (375)
+...--.+ +.|..-+ -..+.++ +.++++.|++ .++++ -.+..+|. - -+++-+.+..+.|.+.|+.
T Consensus 110 vavFgaAS-e~FslkN-iNctiees~~rf~~v~kaA~~---~ni~vRGYVScvvGCPyeG~v~P~kVa~V~k~ly~mGCy 184 (316)
T KOG2368|consen 110 VAVFGAAS-EAFSLKN-INCTIEESLKRFMEVLKAAQE---HNIRVRGYVSCVVGCPYEGAVQPSKVAEVVKKLYEMGCY 184 (316)
T ss_pred EEeeehhh-hhhhhcc-CCccHHHHHHHHHHHHHHHHH---cCCccceEEEEEecCCccCCcCHHHHHHHHHHHHhCCcE
Confidence 55432222 2232222 2344444 4566677777 34554 44567787 3 3788899999999999998
Q ss_pred EEeeecCC
Q 017200 306 VMTFGQYM 313 (375)
Q Consensus 306 ~v~i~qYl 313 (375)
.|.+|.-+
T Consensus 185 EiSLGDTI 192 (316)
T KOG2368|consen 185 EISLGDTI 192 (316)
T ss_pred EEeccccc
Confidence 88776443
No 315
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=78.46 E-value=8.9 Score=37.78 Aligned_cols=77 Identities=13% Similarity=0.181 Sum_probs=53.5
Q ss_pred hHHHHHHHHcCcccccccccchHHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEec-CCCHHHHHHHHHHHH
Q 017200 222 NGCVREVAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGC-GETPDQVVSTMEKVR 300 (375)
Q Consensus 222 ~e~l~~L~~aGldv~~hnlEtv~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~tkt~imvGl-GET~ee~~etl~~Lr 300 (375)
.+.++.+.+.|+|.+=.+=-|-+- ...+.+++.++++.+.+.... +.-+|+|. +.+-+|-++..+..+
T Consensus 28 ~~lv~~li~~Gv~gi~~~GttGE~-------~~Ls~eEr~~v~~~~v~~~~g----rvpviaG~g~~~t~eai~lak~a~ 96 (299)
T COG0329 28 RRLVEFLIAAGVDGLVVLGTTGES-------PTLTLEERKEVLEAVVEAVGG----RVPVIAGVGSNSTAEAIELAKHAE 96 (299)
T ss_pred HHHHHHHHHcCCCEEEECCCCccc-------hhcCHHHHHHHHHHHHHHHCC----CCcEEEecCCCcHHHHHHHHHHHH
Confidence 455667777887744221112120 246789999999999996422 44499999 556999999999999
Q ss_pred HcCCcEEee
Q 017200 301 AAGVDVMTF 309 (375)
Q Consensus 301 elgvd~v~i 309 (375)
++|+|-+-+
T Consensus 97 ~~Gad~il~ 105 (299)
T COG0329 97 KLGADGILV 105 (299)
T ss_pred hcCCCEEEE
Confidence 999985433
No 316
>PLN02540 methylenetetrahydrofolate reductase
Probab=78.24 E-value=13 Score=39.98 Aligned_cols=52 Identities=13% Similarity=0.128 Sum_probs=39.9
Q ss_pred CCcchHHHHHHHHHhcCCcEEEEEeeeCCCCC------cccHHHHHHHHHHHHHhCCC
Q 017200 157 PDPDEPTNVAEAIASWGLDYVVITSVDRDDLA------DQGSGHFAQTVRKLKELKPN 208 (375)
Q Consensus 157 ld~eEi~~~a~al~~~G~~eIvLTsgdr~dl~------d~G~~~~~~lir~Ik~~~p~ 208 (375)
++.+++......+.+.|++.|+...||.+.-. ++++.+-.++|+.|++.+.+
T Consensus 70 ~n~~~L~~~L~~a~~~GIrNILALrGDpp~~~d~~~~~~g~F~~A~dLV~~Ir~~~gd 127 (565)
T PLN02540 70 MPVEKIDHALETIKSNGIQNILALRGDPPHGQDKFVQVEGGFACALDLVKHIRSKYGD 127 (565)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCcCCCCCCcccHHHHHHHHHHhCCC
Confidence 44668888888899999999998888854321 24577788999999987643
No 317
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=78.23 E-value=24 Score=34.75 Aligned_cols=83 Identities=12% Similarity=0.136 Sum_probs=53.7
Q ss_pred HHHHHHHHcCcccccccccchHHHHHHhcCCC------CCHHHHHHHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHH
Q 017200 223 GCVREVAKSGLNVFAHNIETVEELQSAVRDHR------ANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTM 296 (375)
Q Consensus 223 e~l~~L~~aGldv~~hnlEtv~rl~~~mr~r~------~s~~~~l~vl~~ak~~~p~Gl~tkt~imvGlGET~ee~~etl 296 (375)
+..+.+.++|.|.+..|.-. + .+++.+.. .+.+...++++.+++..+ +++..-+=+|..++..+..+.+
T Consensus 79 ~aa~~~~~~G~d~IelN~gc-P--~~~~~~~~~Gs~l~~~~~~~~ei~~~vr~~~~--~pv~vKir~g~~~~~~~~~~~a 153 (319)
T TIGR00737 79 EAAKINEELGADIIDINMGC-P--VPKITKKGAGSALLRDPDLIGKIVKAVVDAVD--IPVTVKIRIGWDDAHINAVEAA 153 (319)
T ss_pred HHHHHHHhCCCCEEEEECCC-C--HHHhcCCCccchHhCCHHHHHHHHHHHHhhcC--CCEEEEEEcccCCCcchHHHHH
Confidence 45566778899988777643 2 12222111 134667788888887542 4444444346655666778888
Q ss_pred HHHHHcCCcEEeee
Q 017200 297 EKVRAAGVDVMTFG 310 (375)
Q Consensus 297 ~~Lrelgvd~v~i~ 310 (375)
+.|.+.|++.+++.
T Consensus 154 ~~l~~~G~d~i~vh 167 (319)
T TIGR00737 154 RIAEDAGAQAVTLH 167 (319)
T ss_pred HHHHHhCCCEEEEE
Confidence 99999999999885
No 318
>COG4474 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=78.13 E-value=3.7 Score=37.35 Aligned_cols=53 Identities=26% Similarity=0.270 Sum_probs=43.6
Q ss_pred cchHHHHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCCCcEEEeecCC
Q 017200 159 PDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPD 217 (375)
Q Consensus 159 ~eEi~~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p~i~Ie~l~pd 217 (375)
.+-|.+..+++.+.|++.++|||..+-+ -+-++++..+++.+|++.+-+++|-
T Consensus 28 Kkai~~~l~~lleeGleW~litGqLG~E------~WA~Evv~eLk~eyp~ik~avitpF 80 (180)
T COG4474 28 KKAIKKKLEALLEEGLEWVLITGQLGFE------LWAAEVVIELKEEYPHIKLAVITPF 80 (180)
T ss_pred HHHHHHHHHHHHhcCceEEEEeccccHH------HHHHHHHHHHHhhCCCeeEEEEech
Confidence 3567788899999999999999964432 2457899999999999999999983
No 319
>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase. These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....
Probab=78.03 E-value=29 Score=35.24 Aligned_cols=121 Identities=20% Similarity=0.279 Sum_probs=74.9
Q ss_pred HHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhC--------CCcEEEeecCCCCCChHHHHHHHHcCccc
Q 017200 164 NVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELK--------PNMLIEALVPDFRGNNGCVREVAKSGLNV 235 (375)
Q Consensus 164 ~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~--------p~i~Ie~l~pd~~g~~e~l~~L~~aGldv 235 (375)
+.|.++++.|.=.| .+.... .+..++.++.+|+.+ ..+.+.+.++....+.+.++.|.++|+|+
T Consensus 52 ~mAiama~~Gglgv-----ih~~~~---~e~q~~~v~~vK~~~~~a~~d~~~~l~V~aavg~~~~~~er~~~L~~agvD~ 123 (352)
T PF00478_consen 52 EMAIAMARLGGLGV-----IHRNMS---IEEQAEEVKKVKRYYPNASKDEKGRLLVAAAVGTRDDDFERAEALVEAGVDV 123 (352)
T ss_dssp HHHHHHHHTTSEEE-----EESSSC---HHHHHHHHHHHHTHHTTHHBHTTSCBCEEEEEESSTCHHHHHHHHHHTT-SE
T ss_pred HHHHHHHHhcCCce-----ecCCCC---HHHHHHHHhhhccccccccccccccceEEEEecCCHHHHHHHHHHHHcCCCE
Confidence 66888888866333 223333 455778888888643 23455544433322478899999999998
Q ss_pred ccccccchHHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcCCcEEeeecCCCC
Q 017200 236 FAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQYMRP 315 (375)
Q Consensus 236 ~~hnlEtv~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~tkt~imvGlGET~ee~~etl~~Lrelgvd~v~i~qYl~P 315 (375)
+-. ++. ..+-+..++.++.+|+.+| +..||.|=--|.|-..+ |-+.|+|.|-+| +=|
T Consensus 124 ivI--D~a----------~g~s~~~~~~ik~ik~~~~-----~~~viaGNV~T~e~a~~----L~~aGad~vkVG--iGp 180 (352)
T PF00478_consen 124 IVI--DSA----------HGHSEHVIDMIKKIKKKFP-----DVPVIAGNVVTYEGAKD----LIDAGADAVKVG--IGP 180 (352)
T ss_dssp EEE--E-S----------STTSHHHHHHHHHHHHHST-----TSEEEEEEE-SHHHHHH----HHHTT-SEEEES--SSS
T ss_pred EEc--ccc----------CccHHHHHHHHHHHHHhCC-----CceEEecccCCHHHHHH----HHHcCCCEEEEe--ccC
Confidence 743 221 2233555788999999766 34567777567766655 667899998887 546
No 320
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=77.99 E-value=25 Score=33.86 Aligned_cols=82 Identities=12% Similarity=0.164 Sum_probs=38.9
Q ss_pred hHHHHHHHHcCcccccccccc---------hH-HHHHHhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecCCCH--
Q 017200 222 NGCVREVAKSGLNVFAHNIET---------VE-ELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETP-- 289 (375)
Q Consensus 222 ~e~l~~L~~aGldv~~hnlEt---------v~-rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~tkt~imvGlGET~-- 289 (375)
.+.++.|.++|+|.+..++-. .. .-.+.+. .+.+.++.++.++.+++..+. +++- +||+ .+.
T Consensus 27 ~~~~~~l~~~Gad~iElGiPfsDP~aDGpvIq~a~~~al~-~G~~~~~~~~~v~~ir~~~~~-~plv-~m~Y---~Npi~ 100 (256)
T TIGR00262 27 LEIIKTLIEAGADALELGVPFSDPLADGPTIQAADLRALR-AGMTPEKCFELLKKVRQKHPN-IPIG-LLTY---YNLIF 100 (256)
T ss_pred HHHHHHHHHcCCCEEEECCCCCCCCCcCHHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCCC-CCEE-EEEe---ccHHh
Confidence 444555555566655444311 11 1122334 466777777777777753212 2222 3332 111
Q ss_pred -HHHHHHHHHHHHcCCcEEee
Q 017200 290 -DQVVSTMEKVRAAGVDVMTF 309 (375)
Q Consensus 290 -ee~~etl~~Lrelgvd~v~i 309 (375)
--+.+.++.+.+.|++.+.+
T Consensus 101 ~~G~e~f~~~~~~aGvdgvii 121 (256)
T TIGR00262 101 RKGVEEFYAKCKEVGVDGVLV 121 (256)
T ss_pred hhhHHHHHHHHHHcCCCEEEE
Confidence 01233455666667666655
No 321
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=77.97 E-value=16 Score=33.79 Aligned_cols=83 Identities=14% Similarity=0.232 Sum_probs=51.6
Q ss_pred hHHHHHHHHcCcccccccccchHHHHHHhcCCC------CCHHHHHHHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHH
Q 017200 222 NGCVREVAKSGLNVFAHNIETVEELQSAVRDHR------ANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVST 295 (375)
Q Consensus 222 ~e~l~~L~~aGldv~~hnlEtv~rl~~~mr~r~------~s~~~~l~vl~~ak~~~p~Gl~tkt~imvGlGET~ee~~et 295 (375)
.+..+.+.++|.|.+..|+-.-. ..++... .+.+...++++.+++..+ +.+...+=.|..+. ++..+.
T Consensus 70 ~~aa~~~~~aG~d~ieln~g~p~---~~~~~~~~G~~l~~~~~~~~eii~~v~~~~~--~~v~vk~r~~~~~~-~~~~~~ 143 (231)
T cd02801 70 AEAAKIVEELGADGIDLNMGCPS---PKVTKGGAGAALLKDPELVAEIVRAVREAVP--IPVTVKIRLGWDDE-EETLEL 143 (231)
T ss_pred HHHHHHHHhcCCCEEEEeCCCCH---HHHhCCCeeehhcCCHHHHHHHHHHHHHhcC--CCEEEEEeeccCCc-hHHHHH
Confidence 34567777889888877653311 1222112 156667788888888643 22333332333222 588999
Q ss_pred HHHHHHcCCcEEeee
Q 017200 296 MEKVRAAGVDVMTFG 310 (375)
Q Consensus 296 l~~Lrelgvd~v~i~ 310 (375)
++.|.+.|++.+++.
T Consensus 144 ~~~l~~~Gvd~i~v~ 158 (231)
T cd02801 144 AKALEDAGASALTVH 158 (231)
T ss_pred HHHHHHhCCCEEEEC
Confidence 999999999999875
No 322
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=77.39 E-value=12 Score=37.88 Aligned_cols=68 Identities=19% Similarity=0.286 Sum_probs=49.0
Q ss_pred HHHHHHHHhc--CCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCCCcEEEeecCCCCCChHHHHHHHHcCccccccc
Q 017200 163 TNVAEAIASW--GLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHN 239 (375)
Q Consensus 163 ~~~a~al~~~--G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGldv~~hn 239 (375)
.+.++++.+. |++.|+|=.-+. -..++.+.|+.||+.+|+..| +-++.. +.|..+.|.++|+|.+-.+
T Consensus 109 ~er~~~L~~a~~~~d~iviD~AhG------hs~~~i~~ik~ir~~~p~~~v--iaGNV~-T~e~a~~Li~aGAD~ikVg 178 (343)
T TIGR01305 109 LEKMTSILEAVPQLKFICLDVANG------YSEHFVEFVKLVREAFPEHTI--MAGNVV-TGEMVEELILSGADIVKVG 178 (343)
T ss_pred HHHHHHHHhcCCCCCEEEEECCCC------cHHHHHHHHHHHHhhCCCCeE--EEeccc-CHHHHHHHHHcCCCEEEEc
Confidence 4556667766 589998765443 267899999999999987654 223222 6788999999999987443
No 323
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=77.33 E-value=25 Score=34.28 Aligned_cols=76 Identities=14% Similarity=0.146 Sum_probs=43.5
Q ss_pred HHHHHHHHcCcccccccccchHHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHc
Q 017200 223 GCVREVAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAA 302 (375)
Q Consensus 223 e~l~~L~~aGldv~~hnlEtv~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~tkt~imvGlGET~ee~~etl~~Lrel 302 (375)
..++.+.+.|++.+-.+=.|.+ . ..-+.+++.++++.+.+.... +.-+|+|.|-+-+|.++..+..+++
T Consensus 25 ~l~~~l~~~Gv~gi~v~GstGE-----~--~~Ls~eEr~~l~~~~~~~~~~----~~pvi~gv~~~t~~~i~~a~~a~~~ 93 (289)
T cd00951 25 AHVEWLLSYGAAALFAAGGTGE-----F--FSLTPDEYAQVVRAAVEETAG----RVPVLAGAGYGTATAIAYAQAAEKA 93 (289)
T ss_pred HHHHHHHHcCCCEEEECcCCcC-----c--ccCCHHHHHHHHHHHHHHhCC----CCCEEEecCCCHHHHHHHHHHHHHh
Confidence 3455556666665422211211 0 134567777777777664322 3346666644777777777777777
Q ss_pred CCcEEee
Q 017200 303 GVDVMTF 309 (375)
Q Consensus 303 gvd~v~i 309 (375)
|+|.+-+
T Consensus 94 Gad~v~~ 100 (289)
T cd00951 94 GADGILL 100 (289)
T ss_pred CCCEEEE
Confidence 7776655
No 324
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=76.96 E-value=19 Score=34.81 Aligned_cols=78 Identities=14% Similarity=0.191 Sum_probs=52.0
Q ss_pred hHHHHHHHHcCcccccccccchHHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEec-CCCHHHHHHHHHHHH
Q 017200 222 NGCVREVAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGC-GETPDQVVSTMEKVR 300 (375)
Q Consensus 222 ~e~l~~L~~aGldv~~hnlEtv~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~tkt~imvGl-GET~ee~~etl~~Lr 300 (375)
...++.+.+.|++.+-.+=.|-+- ..-+.+++.++++.+.+... | +..+++|. ..+-+|.++..+..+
T Consensus 22 ~~~i~~l~~~Gv~Gi~~~GstGE~-------~~Ls~~Er~~~~~~~~~~~~-~---~~~vi~gv~~~s~~~~i~~a~~a~ 90 (285)
T TIGR00674 22 EKLIDFQIENGTDAIVVVGTTGES-------PTLSHEEHKKVIEFVVDLVN-G---RVPVIAGTGSNATEEAISLTKFAE 90 (285)
T ss_pred HHHHHHHHHcCCCEEEECccCccc-------ccCCHHHHHHHHHHHHHHhC-C---CCeEEEeCCCccHHHHHHHHHHHH
Confidence 445666677787765332222221 23567888888888877542 2 45688888 467888889999999
Q ss_pred HcCCcEEeee
Q 017200 301 AAGVDVMTFG 310 (375)
Q Consensus 301 elgvd~v~i~ 310 (375)
++|+|.+-+.
T Consensus 91 ~~Gad~v~v~ 100 (285)
T TIGR00674 91 DVGADGFLVV 100 (285)
T ss_pred HcCCCEEEEc
Confidence 9998876653
No 325
>PF01207 Dus: Dihydrouridine synthase (Dus); InterPro: IPR001269 Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 (P53759 from SWISSPROT) from Saccharomyces cerevisiae (Baker's yeast) acts on pre-tRNA-Phe, while Dus 2 (P53720 from SWISSPROT) acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD []. Some family members may be targeted to the mitochondria and even have a role in mitochondria []. ; GO: 0017150 tRNA dihydrouridine synthase activity, 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing, 0055114 oxidation-reduction process; PDB: 1VHN_A 3B0P_A 3B0V_D 3B0U_Y.
Probab=76.82 E-value=13 Score=36.77 Aligned_cols=118 Identities=16% Similarity=0.255 Sum_probs=71.0
Q ss_pred HHHHHHHHcCcccccccccc-hHHHHHHhcC--CCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHH
Q 017200 223 GCVREVAKSGLNVFAHNIET-VEELQSAVRD--HRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKV 299 (375)
Q Consensus 223 e~l~~L~~aGldv~~hnlEt-v~rl~~~mr~--r~~s~~~~l~vl~~ak~~~p~Gl~tkt~imvGlGET~ee~~etl~~L 299 (375)
+..+.+.+.|.|.+..|+=. ++.+.+.=.+ --.+.+.-.++++.+++..+ ++++.-|=+|..++.++.++.++.|
T Consensus 70 ~aa~~~~~~~~~~IDlN~GCP~~~v~~~g~Ga~Ll~~p~~~~~iv~~~~~~~~--~pvsvKiR~g~~~~~~~~~~~~~~l 147 (309)
T PF01207_consen 70 EAAEIVAELGFDGIDLNMGCPAPKVTKGGAGAALLKDPDLLAEIVKAVRKAVP--IPVSVKIRLGWDDSPEETIEFARIL 147 (309)
T ss_dssp HHHHHHCCTT-SEEEEEE---SHHHHHCT-GGGGGC-HHHHHHHHHHHHHH-S--SEEEEEEESECT--CHHHHHHHHHH
T ss_pred HHHHhhhccCCcEEeccCCCCHHHHhcCCcChhhhcChHHhhHHHHhhhcccc--cceEEecccccccchhHHHHHHHHh
Confidence 34455556688888888653 3344433110 01356788888888888643 6888888889988899999999999
Q ss_pred HHcCCcEEeeecCCCCCCCCCCccccCCHHHHHHHHHHHHHhhhhhhccc
Q 017200 300 RAAGVDVMTFGQYMRPSKRHMPVSEYITPEAFERYRALGMEMGFRYVASG 349 (375)
Q Consensus 300 relgvd~v~i~qYl~P~~~~~~v~~~v~pe~~~~l~~~a~~~gf~~~~sg 349 (375)
.+.|++.+++. + .++...|-.+...+.+.++........++.|
T Consensus 148 ~~~G~~~i~vH----~---Rt~~q~~~~~a~w~~i~~i~~~~~ipvi~NG 190 (309)
T PF01207_consen 148 EDAGVSAITVH----G---RTRKQRYKGPADWEAIAEIKEALPIPVIANG 190 (309)
T ss_dssp HHTT--EEEEE----C---S-TTCCCTS---HHHHHHCHHC-TSEEEEES
T ss_pred hhcccceEEEe----c---CchhhcCCcccchHHHHHHhhcccceeEEcC
Confidence 99999999996 3 1333444445556666666666665555665
No 326
>COG0107 HisF Imidazoleglycerol-phosphate synthase [Amino acid transport and metabolism]
Probab=76.57 E-value=7.9 Score=37.15 Aligned_cols=83 Identities=19% Similarity=0.212 Sum_probs=51.8
Q ss_pred CCCcCCCCCCC-CCCCCCCcchHHHHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCCCcEEEeecCCCC
Q 017200 141 RGCRFCNVKTS-RAPPPPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFR 219 (375)
Q Consensus 141 ~~C~FC~v~~~-r~~~~ld~eEi~~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p~i~Ie~l~pd~~ 219 (375)
..|.|+-+-.+ +.+ +--++++-|++..++|..||+|||.|+|.-.. |++ .++++.++... ++.|-++- -.
T Consensus 138 ~~~~~~v~~~gGr~~---t~~d~~~Wa~~~e~~GAGEIlLtsmD~DGtk~-GyD--l~l~~~v~~~v-~iPvIASG--Ga 208 (256)
T COG0107 138 ENGWYEVFTHGGRED---TGLDAVEWAKEVEELGAGEILLTSMDRDGTKA-GYD--LELTRAVREAV-NIPVIASG--GA 208 (256)
T ss_pred CCCcEEEEecCCCcC---CCcCHHHHHHHHHHcCCceEEEeeeccccccc-CcC--HHHHHHHHHhC-CCCEEecC--CC
Confidence 46777776654 322 22356777888899999999999999875542 333 67888887754 23333222 22
Q ss_pred CChHHHHHHHHcC
Q 017200 220 GNNGCVREVAKSG 232 (375)
Q Consensus 220 g~~e~l~~L~~aG 232 (375)
|+.+.+.+....|
T Consensus 209 G~~ehf~eaf~~~ 221 (256)
T COG0107 209 GKPEHFVEAFTEG 221 (256)
T ss_pred CcHHHHHHHHHhc
Confidence 3556555554333
No 327
>PRK04452 acetyl-CoA decarbonylase/synthase complex subunit delta; Provisional
Probab=76.51 E-value=88 Score=31.40 Aligned_cols=157 Identities=13% Similarity=0.141 Sum_probs=85.2
Q ss_pred HHHHHHHH-hcCCcEEEEEe-eeCCCCCcccHHHHHHHHHHHHHhCCCcEEEee-cCCCCCChHHHHHHHHcCccccccc
Q 017200 163 TNVAEAIA-SWGLDYVVITS-VDRDDLADQGSGHFAQTVRKLKELKPNMLIEAL-VPDFRGNNGCVREVAKSGLNVFAHN 239 (375)
Q Consensus 163 ~~~a~al~-~~G~~eIvLTs-gdr~dl~d~G~~~~~~lir~Ik~~~p~i~Ie~l-~pd~~g~~e~l~~L~~aGldv~~hn 239 (375)
.+.|+... +.|.+.|.|-- +..++..|.+.+.|+.+++.|.+.. ++.+.++ +.+-..+.+.++...+ .+...
T Consensus 78 ~~~Ak~q~~~~GAd~Idl~~~s~dp~~~d~~~~e~~~~Vk~V~eav-d~PL~Id~s~n~~kD~evleaale----~~~g~ 152 (319)
T PRK04452 78 AAWAKKCVEEYGADMITLHLISTDPNGKDKSPEEAAKTVEEVLQAV-DVPLIIGGSGNPEKDAEVLEKVAE----AAEGE 152 (319)
T ss_pred HHHHHHHHHHhCCCEEEEECCCCCcccccchHHHHHHHHHHHHHhC-CCCEEEecCCCCCCCHHHHHHHHH----HhCCC
Confidence 44444444 88999988872 3334444445677899999987654 3333232 1111114555554443 23210
Q ss_pred ccchHHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecC-CCHHHHHHHHHHHHHcCC--cEEeeecCCCCC
Q 017200 240 IETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCG-ETPDQVVSTMEKVRAAGV--DVMTFGQYMRPS 316 (375)
Q Consensus 240 lEtv~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~tkt~imvGlG-ET~ee~~etl~~Lrelgv--d~v~i~qYl~P~ 316 (375)
..-+. .++.+.+-+++..|++. |.. ++++. -..+...++...|.++|+ +-|-|= |.
T Consensus 153 -------~pLIn--Sat~en~~~i~~lA~~y---~~~-----Vva~s~~Dln~ak~L~~~l~~~Gi~~edIviD----P~ 211 (319)
T PRK04452 153 -------RCLLG--SAEEDNYKKIAAAAMAY---GHA-----VIAWSPLDINLAKQLNILLTELGVPRERIVMD----PT 211 (319)
T ss_pred -------CCEEE--ECCHHHHHHHHHHHHHh---CCe-----EEEEcHHHHHHHHHHHHHHHHcCCCHHHEEEe----CC
Confidence 01122 46667777788888874 322 22332 335566677777888898 555553 43
Q ss_pred CCCCCccccCCHHHHHHHHHHHHHhhhhhh
Q 017200 317 KRHMPVSEYITPEAFERYRALGMEMGFRYV 346 (375)
Q Consensus 317 ~~~~~v~~~v~pe~~~~l~~~a~~~gf~~~ 346 (375)
...+-..-.-.-+.++.++..|.. |+...
T Consensus 212 ~~~lg~g~e~~~~~~e~IR~aAl~-~d~~l 240 (319)
T PRK04452 212 TGALGYGIEYSYSVMERIRLAALK-GDEML 240 (319)
T ss_pred cccccCCHHHHHHHHHHHHHHHhc-CCCcC
Confidence 321111100134567888888887 77654
No 328
>PRK07709 fructose-bisphosphate aldolase; Provisional
Probab=76.36 E-value=82 Score=31.01 Aligned_cols=170 Identities=15% Similarity=0.135 Sum_probs=99.0
Q ss_pred CCcchHHHHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCC-CcEEEeecCCCCCChHHHHHHHHcCccc
Q 017200 157 PDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKP-NMLIEALVPDFRGNNGCVREVAKSGLNV 235 (375)
Q Consensus 157 ld~eEi~~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p-~i~Ie~l~pd~~g~~e~l~~L~~aGldv 235 (375)
.+.+.+...++++.+.+.--|+-++...-.+. .|...+..+++.+.+... .+.|. +.-|...+.+.+....++|.++
T Consensus 26 ~n~e~~~avi~AAe~~~sPvIiq~~~~~~~~~-~~~~~~~~~~~~~a~~~~~~VPV~-lHLDHg~~~e~i~~ai~~GftS 103 (285)
T PRK07709 26 NNLEWTQAILAAAEEEKSPVILGVSEGAARHM-TGFKTVVAMVKALIEEMNITVPVA-IHLDHGSSFEKCKEAIDAGFTS 103 (285)
T ss_pred CCHHHHHHHHHHHHHHCCCEEEEcCcchhhhc-CCHHHHHHHHHHHHHHcCCCCcEE-EECCCCCCHHHHHHHHHcCCCE
Confidence 35677778888888888877766655432220 246778888888876542 23332 5567766788899999999765
Q ss_pred ccccccchHHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEec--CCCH---------HHHHHHHHHHHHcCC
Q 017200 236 FAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGC--GETP---------DQVVSTMEKVRAAGV 304 (375)
Q Consensus 236 ~~hnlEtv~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~tkt~imvGl--GET~---------ee~~etl~~Lrelgv 304 (375)
+ .++.+..=| .-+.+...++++.||. .|+.+-.- +|. |+.+ -+-.+..+++++.|+
T Consensus 104 V--M~DgS~lp~------eeNi~~Trevv~~Ah~---~gv~VEaE--lG~igg~ed~~~~~~~~yT~peeA~~Fv~~Tgv 170 (285)
T PRK07709 104 V--MIDASHHPF------EENVETTKKVVEYAHA---RNVSVEAE--LGTVGGQEDDVIAEGVIYADPAECKHLVEATGI 170 (285)
T ss_pred E--EEeCCCCCH------HHHHHHHHHHHHHHHH---cCCEEEEE--EeccCCccCCcccccccCCCHHHHHHHHHHhCC
Confidence 4 344332101 1123445677888887 46555332 233 2222 256788899999999
Q ss_pred cEEeeecCCCCCCCCCCccccCCHHHHHHHHHHHHHhhhhhh
Q 017200 305 DVMTFGQYMRPSKRHMPVSEYITPEAFERYRALGMEMGFRYV 346 (375)
Q Consensus 305 d~v~i~qYl~P~~~~~~v~~~v~pe~~~~l~~~a~~~gf~~~ 346 (375)
|.+-+. + ++-|-.-.. ...=.|++|+++....+.-.|
T Consensus 171 D~LAva-i---Gt~HG~Y~~-~p~L~~~~L~~I~~~~~iPLV 207 (285)
T PRK07709 171 DCLAPA-L---GSVHGPYKG-EPNLGFAEMEQVRDFTGVPLV 207 (285)
T ss_pred CEEEEe-e---cccccCcCC-CCccCHHHHHHHHHHHCCCEE
Confidence 976553 1 111211000 011136777777777666333
No 329
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=76.30 E-value=29 Score=33.79 Aligned_cols=78 Identities=14% Similarity=0.115 Sum_probs=48.2
Q ss_pred hHHHHHHHH-cCcccccccccchHHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecC-CCHHHHHHHHHHH
Q 017200 222 NGCVREVAK-SGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCG-ETPDQVVSTMEKV 299 (375)
Q Consensus 222 ~e~l~~L~~-aGldv~~hnlEtv~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~tkt~imvGlG-ET~ee~~etl~~L 299 (375)
.+.++.+.+ .|++.+-.+--|.+ . ..-+.+++.++++.+.+..+. +..+|+|.| .+-+|.++..+..
T Consensus 27 ~~li~~l~~~~Gv~gi~v~GstGE-----~--~~Ls~eEr~~~~~~~~~~~~~----~~~viagvg~~~t~~ai~~a~~a 95 (293)
T PRK04147 27 RRLVRFNIEKQGIDGLYVGGSTGE-----A--FLLSTEEKKQVLEIVAEEAKG----KVKLIAQVGSVNTAEAQELAKYA 95 (293)
T ss_pred HHHHHHHHhcCCCCEEEECCCccc-----c--ccCCHHHHHHHHHHHHHHhCC----CCCEEecCCCCCHHHHHHHHHHH
Confidence 445666666 77665432211222 0 134567778888777775432 345788884 5778888888888
Q ss_pred HHcCCcEEeee
Q 017200 300 RAAGVDVMTFG 310 (375)
Q Consensus 300 relgvd~v~i~ 310 (375)
+++|+|.+-+.
T Consensus 96 ~~~Gad~v~v~ 106 (293)
T PRK04147 96 TELGYDAISAV 106 (293)
T ss_pred HHcCCCEEEEe
Confidence 88888766553
No 330
>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase. This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum.
Probab=76.29 E-value=17 Score=34.05 Aligned_cols=73 Identities=12% Similarity=0.165 Sum_probs=51.3
Q ss_pred CCCcchHHHHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCCCcEEEeecCCCCCChHHHHHHHHcCccc
Q 017200 156 PPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNV 235 (375)
Q Consensus 156 ~ld~eEi~~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGldv 235 (375)
.+++||....+.+....|++.|.|..++....+- . .++++.+++.. ++. +..+.-..+.|.++.+.++|.|.
T Consensus 130 ~~~~e~~~~~a~aa~~~G~~~i~Le~~sGa~~~v--~---~e~i~~Vk~~~-~~P--v~vGGGIrs~e~a~~l~~~GAD~ 201 (205)
T TIGR01769 130 YNKPEIAAAYCLAAKYFGMKWVYLEAGSGASYPV--N---PETISLVKKAS-GIP--LIVGGGIRSPEIAYEIVLAGADA 201 (205)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEEcCCCCCCCC--C---HHHHHHHHHhh-CCC--EEEeCCCCCHHHHHHHHHcCCCE
Confidence 3789999999999999999999997655432221 1 56778887754 222 23333233789999999999886
Q ss_pred c
Q 017200 236 F 236 (375)
Q Consensus 236 ~ 236 (375)
+
T Consensus 202 V 202 (205)
T TIGR01769 202 I 202 (205)
T ss_pred E
Confidence 5
No 331
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=76.15 E-value=32 Score=33.36 Aligned_cols=139 Identities=17% Similarity=0.217 Sum_probs=76.2
Q ss_pred CCcchHHHHHHHHHhcCCcEEEEEeeeCCCCCcc-------------c--HHHHHHHHHHHHHhCCCcEEEee---cCCC
Q 017200 157 PDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQ-------------G--SGHFAQTVRKLKELKPNMLIEAL---VPDF 218 (375)
Q Consensus 157 ld~eEi~~~a~al~~~G~~eIvLTsgdr~dl~d~-------------G--~~~~~~lir~Ik~~~p~i~Ie~l---~pd~ 218 (375)
.+.+.-.+.++++.+.|++-|=|-=--.|-+.|| | .+.+.++++++++. +++.+-++ -|-|
T Consensus 26 P~~~~~~~~~~~l~~~Gad~iElGiPfSDP~aDGpvIq~a~~rAL~~g~~~~~~~~~~~~~r~~-~~~p~vlm~Y~N~i~ 104 (263)
T CHL00200 26 PDIVITKKALKILDKKGADIIELGIPYSDPLADGPIIQEASNRALKQGINLNKILSILSEVNGE-IKAPIVIFTYYNPVL 104 (263)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECCCCCCCCccCHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC-CCCCEEEEecccHHH
Confidence 3578888899999999998887643333334443 1 23567777777743 34432222 2223
Q ss_pred C-CChHHHHHHHHcCccccccc---ccchHHHHHHhcCC---------CCCHHHHHHHHHHHHHhCCCCceEEEeEEEec
Q 017200 219 R-GNNGCVREVAKSGLNVFAHN---IETVEELQSAVRDH---------RANFKQSLDVLMMAKDYVPAGTLTKTSIMLGC 285 (375)
Q Consensus 219 ~-g~~e~l~~L~~aGldv~~hn---lEtv~rl~~~mr~r---------~~s~~~~l~vl~~ak~~~p~Gl~tkt~imvGl 285 (375)
. |-++.++.++++|+|.+-.- .|-.+++++.++.. ..+.+++++.+....+ |+.-.-+ ..|.
T Consensus 105 ~~G~e~F~~~~~~aGvdgviipDLP~ee~~~~~~~~~~~gi~~I~lv~PtT~~eri~~i~~~a~----gFIY~vS-~~Gv 179 (263)
T CHL00200 105 HYGINKFIKKISQAGVKGLIIPDLPYEESDYLISVCNLYNIELILLIAPTSSKSRIQKIARAAP----GCIYLVS-TTGV 179 (263)
T ss_pred HhCHHHHHHHHHHcCCeEEEecCCCHHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHhCC----CcEEEEc-CCCC
Confidence 2 44677899999999876432 34444555443310 1233444433333322 4443333 4566
Q ss_pred -CCC---HHHHHHHHHHHHH
Q 017200 286 -GET---PDQVVSTMEKVRA 301 (375)
Q Consensus 286 -GET---~ee~~etl~~Lre 301 (375)
|.. .+++.+.++.+|+
T Consensus 180 TG~~~~~~~~~~~~i~~ir~ 199 (263)
T CHL00200 180 TGLKTELDKKLKKLIETIKK 199 (263)
T ss_pred CCCCccccHHHHHHHHHHHH
Confidence 543 3555666666665
No 332
>PF01116 F_bP_aldolase: Fructose-bisphosphate aldolase class-II; InterPro: IPR000771 Fructose-bisphosphate aldolase [, ] is a glycolytic enzyme that catalyses the reversible aldol cleavage or condensation of fructose-1,6-bisphosphate into dihydroxyacetone-phosphate and glyceraldehyde 3-phosphate. There are two classes of fructose-bisphosphate aldolases with different catalytic mechanisms. Class-II aldolases [], mainly found in prokaryotes and fungi, are homodimeric enzymes, which require a divalent metal ion, generally zinc, for their activity. This family also includes the Escherichia coli galactitol operon protein, gatY, which catalyses the transformation of tagatose 1,6-bisphosphate into glycerone phosphate and D-glyceraldehyde 3-phosphate; and E. coli N-acetyl galactosamine operon protein, agaY, which catalyses the same reaction. There are two histidine residues in the first half of the sequence of these enzymes that have been shown to be involved in binding a zinc ion [].; GO: 0008270 zinc ion binding, 0016832 aldehyde-lyase activity, 0005975 carbohydrate metabolic process; PDB: 3Q94_A 1RVG_B 1RV8_C 3C4U_A 3C56_B 3C52_A 2FJK_A 3N9R_P 3N9S_A 1GVF_B ....
Probab=76.14 E-value=33 Score=33.75 Aligned_cols=171 Identities=18% Similarity=0.176 Sum_probs=103.1
Q ss_pred CCcchHHHHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCCCcEEEeecCCCCCChHHHHHHHHcCcccc
Q 017200 157 PDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVF 236 (375)
Q Consensus 157 ld~eEi~~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGldv~ 236 (375)
.+.+.+..+++++.+.+.-=|+-++...-+ ..|...+..+++.+.+.. .+.| ++.-|+..+.+.+..-.+.|.+++
T Consensus 25 ~n~e~~~avi~AAe~~~sPvIlq~~~~~~~--~~~~~~~~~~~~~~a~~~-~vPV-alHLDH~~~~e~i~~ai~~GftSV 100 (287)
T PF01116_consen 25 YNLETARAVIEAAEELNSPVILQISPSEVK--YMGLEYLAAMVKAAAEEA-SVPV-ALHLDHGKDFEDIKRAIDAGFTSV 100 (287)
T ss_dssp SSHHHHHHHHHHHHHTTS-EEEEEEHHHHH--HHHHHHHHHHHHHHHHHS-TSEE-EEEEEEE-SHHHHHHHHHHTSSEE
T ss_pred CCHHHHHHHHHHHHHhCCCEEEEcchhhhh--hhhHHHHHHHHHHHHHHc-CCCE-EeecccCCCHHHHHHHHHhCcccc
Confidence 346788888889889888777766653222 225778899999998876 4666 345565557888888888887654
Q ss_pred cccccchHHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCceEE--EeEEEec--C-CCH-------HHHHHHHHHHHHcCC
Q 017200 237 AHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTK--TSIMLGC--G-ETP-------DQVVSTMEKVRAAGV 304 (375)
Q Consensus 237 ~hnlEtv~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~tk--t~imvGl--G-ET~-------ee~~etl~~Lrelgv 304 (375)
.++.+..=|+ -+.+...++.+.||. .|+.+- -+-|-|. | +++ -+-.+..+++++.|+
T Consensus 101 --M~DgS~l~~e------eNi~~T~~vv~~ah~---~gv~VEaElG~i~g~ed~~~~~~~~~~~~TdP~~a~~Fv~~Tgv 169 (287)
T PF01116_consen 101 --MIDGSALPFE------ENIAITREVVEYAHA---YGVSVEAELGHIGGKEDGIESEEETESLYTDPEEAKEFVEETGV 169 (287)
T ss_dssp --EEE-TTS-HH------HHHHHHHHHHHHHHH---TT-EEEEEESBSSSSCTTCSSSTT-TTCSSSHHHHHHHHHHHTT
T ss_pred --cccCCcCCHH------HHHHHHHHHHHhhhh---hCCEEEEEeeeeeccCCCccccccccccccCHHHHHHHHHHhCC
Confidence 4555431111 134566788899998 465443 3333332 1 111 155678899999999
Q ss_pred cEEeeecCCCCCCCCCCccccCCHH-HHHHHHHHHHHh-hhhhh
Q 017200 305 DVMTFGQYMRPSKRHMPVSEYITPE-AFERYRALGMEM-GFRYV 346 (375)
Q Consensus 305 d~v~i~qYl~P~~~~~~v~~~v~pe-~~~~l~~~a~~~-gf~~~ 346 (375)
|.+-+. + ++.|-.-.....|. .|++|+++.... +.-.|
T Consensus 170 D~LAva-i---Gt~HG~y~~~~~p~Ld~~~L~~I~~~~~~iPLV 209 (287)
T PF01116_consen 170 DALAVA-I---GTAHGMYKGGKKPKLDFDRLKEIREAVPDIPLV 209 (287)
T ss_dssp SEEEE--S---SSBSSSBSSSSSTC--HHHHHHHHHHHHTSEEE
T ss_pred CEEEEe-c---CccccccCCCCCcccCHHHHHHHHHhcCCCCEE
Confidence 987663 1 12232211111232 588888888887 66444
No 333
>cd01299 Met_dep_hydrolase_A Metallo-dependent hydrolases, subgroup A is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.
Probab=76.05 E-value=49 Score=32.27 Aligned_cols=89 Identities=12% Similarity=0.144 Sum_probs=55.5
Q ss_pred CCcchHHHHHHHHHhcCCcEEEEEe--ee--CCCCC---cccHHHHHHHHHHHHHhCCCcEEEeecCCCCCChHHHHHHH
Q 017200 157 PDPDEPTNVAEAIASWGLDYVVITS--VD--RDDLA---DQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVA 229 (375)
Q Consensus 157 ld~eEi~~~a~al~~~G~~eIvLTs--gd--r~dl~---d~G~~~~~~lir~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~ 229 (375)
-+++|+.+.++...+.|++.|-+-. +. ..+.+ ....+.+..+++..++..-.+.+++. ....++.+.
T Consensus 117 ~~~~~~~~~v~~~~~~G~~~iK~~~~g~~~~~~~~~~~~~~~~e~l~~~~~~A~~~g~~v~~H~~------~~~~i~~~l 190 (342)
T cd01299 117 DGVEEVRAAVREQLRRGADQIKIMATGGVLSPGDPPPDTQFSEEELRAIVDEAHKAGLYVAAHAY------GAEAIRRAI 190 (342)
T ss_pred cCHHHHHHHHHHHHHhCCCEEEEeccCCcCCCCCCCcccCcCHHHHHHHHHHHHHcCCEEEEEeC------CHHHHHHHH
Confidence 3578888999999999998876653 21 00100 01145677777777665322444443 345677888
Q ss_pred HcCcccccccccchHHHHHHhc
Q 017200 230 KSGLNVFAHNIETVEELQSAVR 251 (375)
Q Consensus 230 ~aGldv~~hnlEtv~rl~~~mr 251 (375)
++|.+.+.|..-..++.+++|.
T Consensus 191 ~~G~~~i~H~~~~~~~~~~~l~ 212 (342)
T cd01299 191 RAGVDTIEHGFLIDDETIELMK 212 (342)
T ss_pred HcCCCEEeecCCCCHHHHHHHH
Confidence 8999999997554455555554
No 334
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=76.04 E-value=58 Score=32.68 Aligned_cols=78 Identities=14% Similarity=0.168 Sum_probs=49.8
Q ss_pred CCcchHHHHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhC-CCcEEEe-ecCCCCCChHHHHHHHHcCcc
Q 017200 157 PDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELK-PNMLIEA-LVPDFRGNNGCVREVAKSGLN 234 (375)
Q Consensus 157 ld~eEi~~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~-p~i~Ie~-l~pd~~g~~e~l~~L~~aGld 234 (375)
.+++++.+.++.+.+.|.+.|.|.=-..--. ...+.++++.|++.. |++.|.. .+-++.-.........++|++
T Consensus 141 ~~~e~l~~~a~~~~~~Ga~~i~i~DT~G~~~----P~~v~~~v~~l~~~l~~~i~ig~H~HnnlGla~ANslaAi~aGa~ 216 (337)
T PRK08195 141 APPEKLAEQAKLMESYGAQCVYVVDSAGALL----PEDVRDRVRALRAALKPDTQVGFHGHNNLGLGVANSLAAVEAGAT 216 (337)
T ss_pred CCHHHHHHHHHHHHhCCCCEEEeCCCCCCCC----HHHHHHHHHHHHHhcCCCCeEEEEeCCCcchHHHHHHHHHHhCCC
Confidence 4789999999999999999887652111111 356889999999877 6777764 222221012222334478988
Q ss_pred cccc
Q 017200 235 VFAH 238 (375)
Q Consensus 235 v~~h 238 (375)
.+..
T Consensus 217 ~iD~ 220 (337)
T PRK08195 217 RIDG 220 (337)
T ss_pred EEEe
Confidence 7643
No 335
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=76.02 E-value=77 Score=30.51 Aligned_cols=121 Identities=12% Similarity=0.168 Sum_probs=72.4
Q ss_pred CcchHHHHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCCCcEEEeecCCCCCChHHHHHHHHcCccccc
Q 017200 158 DPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFA 237 (375)
Q Consensus 158 d~eEi~~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGldv~~ 237 (375)
+..++.+.|++..+.|..-+-+.. .+++..++ .+.|+.+++.. .+.++..||.-++-++....++|.|.+.
T Consensus 68 ~~~~~~~~A~~~~~~GA~aisvlt--e~~~f~g~----~~~l~~v~~~v---~iPvl~kdfi~~~~qi~~a~~~GAD~Vl 138 (260)
T PRK00278 68 EDFDPVEIAKAYEAGGAACLSVLT--DERFFQGS----LEYLRAARAAV---SLPVLRKDFIIDPYQIYEARAAGADAIL 138 (260)
T ss_pred CCCCHHHHHHHHHhCCCeEEEEec--ccccCCCC----HHHHHHHHHhc---CCCEEeeeecCCHHHHHHHHHcCCCEEE
Confidence 356788999999999997663221 22222222 45566676642 2333457787778899999999999887
Q ss_pred ccccchHHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcCCcEEeeec
Q 017200 238 HNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQ 311 (375)
Q Consensus 238 hnlEtv~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~tkt~imvGlGET~ee~~etl~~Lrelgvd~v~i~q 311 (375)
..... .+.++.-+.++.++++ |+.+=..+ -|.+|... ..++|++++.+.+
T Consensus 139 Li~~~------------l~~~~l~~li~~a~~l---Gl~~lvev-----h~~~E~~~----A~~~gadiIgin~ 188 (260)
T PRK00278 139 LIVAA------------LDDEQLKELLDYAHSL---GLDVLVEV-----HDEEELER----ALKLGAPLIGINN 188 (260)
T ss_pred EEecc------------CCHHHHHHHHHHHHHc---CCeEEEEe-----CCHHHHHH----HHHcCCCEEEECC
Confidence 63211 1224555666777763 44322222 25555533 4467888877753
No 336
>PRK12999 pyruvate carboxylase; Reviewed
Probab=75.95 E-value=43 Score=39.25 Aligned_cols=136 Identities=18% Similarity=0.189 Sum_probs=87.6
Q ss_pred CCCcchHHHHHHHHHhc--CCcEEEEEeeeCCCC--CcccHHHHHHHHHHHHHhCCCcEEEeecCC--CCC--------C
Q 017200 156 PPDPDEPTNVAEAIASW--GLDYVVITSVDRDDL--ADQGSGHFAQTVRKLKELKPNMLIEALVPD--FRG--------N 221 (375)
Q Consensus 156 ~ld~eEi~~~a~al~~~--G~~eIvLTsgdr~dl--~d~G~~~~~~lir~Ik~~~p~i~Ie~l~pd--~~g--------~ 221 (375)
.++.++.+..|+++.+. |+..|-+.||..-|. +-.+.+ =.+.++.+++..|++.+..|.-. ..| .
T Consensus 551 r~~~~d~l~ia~~l~~~~~g~~siE~~ggatfd~~~r~l~e~-p~erl~~~r~~~~~~~~q~l~Rg~n~vgy~~yp~~v~ 629 (1146)
T PRK12999 551 RVRTKDLLRIAPATARLLPNLFSLEMWGGATFDVAYRFLKED-PWERLAELREAAPNVLFQMLLRGSNAVGYTNYPDNVV 629 (1146)
T ss_pred cCCHHHHHHHHHHHHHHhCCCCEEEeeCCcchhhhccccCCC-HHHHHHHHHHhCCCCeEEEEecccccccccCCCchHH
Confidence 37889999999999999 999999998853321 100111 14678888888899888766431 111 1
Q ss_pred hHHHHHHHHcCcccccccccchHHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEec-C---------CCHHH
Q 017200 222 NGCVREVAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGC-G---------ETPDQ 291 (375)
Q Consensus 222 ~e~l~~L~~aGldv~~hnlEtv~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~tkt~imvGl-G---------ET~ee 291 (375)
.+.++..++.|+|++.......+ .+.....++.+++. |.. ..+.+++ | -|.+-
T Consensus 630 ~~~i~~a~~~Gid~~rifd~lnd------------~~~~~~~i~~vk~~---g~~--~~~~i~ytg~~~d~~~~~~~~~~ 692 (1146)
T PRK12999 630 RAFVREAAAAGIDVFRIFDSLNW------------VENMRVAIDAVRET---GKI--AEAAICYTGDILDPARAKYDLDY 692 (1146)
T ss_pred HHHHHHHHHcCCCEEEEeccCCh------------HHHHHHHHHHHHHc---CCe--EEEEEEEEecCCCCCCCCCCHHH
Confidence 44577888999998765421111 23334556666663 432 2233333 2 27777
Q ss_pred HHHHHHHHHHcCCcEEee
Q 017200 292 VVSTMEKVRAAGVDVMTF 309 (375)
Q Consensus 292 ~~etl~~Lrelgvd~v~i 309 (375)
+++..+.+.+.|++.|.|
T Consensus 693 ~~~~a~~l~~~Ga~~i~i 710 (1146)
T PRK12999 693 YVDLAKELEKAGAHILAI 710 (1146)
T ss_pred HHHHHHHHHHcCCCEEEE
Confidence 888888888888888877
No 337
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=75.92 E-value=68 Score=29.84 Aligned_cols=112 Identities=21% Similarity=0.246 Sum_probs=73.6
Q ss_pred CCcchHHHHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCCC-cEEEeecCCCCCChHHHHHHHHcCccc
Q 017200 157 PDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPN-MLIEALVPDFRGNNGCVREVAKSGLNV 235 (375)
Q Consensus 157 ld~eEi~~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p~-i~Ie~l~pd~~g~~e~l~~L~~aGldv 235 (375)
.+.++..+.++++.+.|++-+-+|--+ ++ -.+.|+.|++.+|. +.|.+=+ +. +.+.++...++|.|.
T Consensus 19 ~~~~~~~~~~~a~~~gGi~~iEvt~~~----~~-----~~~~i~~l~~~~~~~~~iGaGT--V~-~~~~~~~a~~aGA~f 86 (206)
T PRK09140 19 ITPDEALAHVGALIEAGFRAIEIPLNS----PD-----PFDSIAALVKALGDRALIGAGT--VL-SPEQVDRLADAGGRL 86 (206)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEeCCC----cc-----HHHHHHHHHHHcCCCcEEeEEe--cC-CHHHHHHHHHcCCCE
Confidence 468999999999999999988888311 11 23578888888874 5554321 11 678999999999985
Q ss_pred ccccccchHHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcCCcEEeee
Q 017200 236 FAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFG 310 (375)
Q Consensus 236 ~~hnlEtv~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~tkt~imvGlGET~ee~~etl~~Lrelgvd~v~i~ 310 (375)
+-- +..+ .++++.+++ .|+. ++.| ..|.+|+.+.. +.|.|++.++
T Consensus 87 ivs--------------p~~~----~~v~~~~~~---~~~~----~~~G-~~t~~E~~~A~----~~Gad~vk~F 131 (206)
T PRK09140 87 IVT--------------PNTD----PEVIRRAVA---LGMV----VMPG-VATPTEAFAAL----RAGAQALKLF 131 (206)
T ss_pred EEC--------------CCCC----HHHHHHHHH---CCCc----EEcc-cCCHHHHHHHH----HcCCCEEEEC
Confidence 521 1211 244455554 2332 3334 57888875544 5899999875
No 338
>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism.
Probab=75.77 E-value=30 Score=33.80 Aligned_cols=78 Identities=13% Similarity=0.124 Sum_probs=48.7
Q ss_pred hHHHHHHHHcCcccccccccchHHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEec-CCCHHHHHHHHHHHH
Q 017200 222 NGCVREVAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGC-GETPDQVVSTMEKVR 300 (375)
Q Consensus 222 ~e~l~~L~~aGldv~~hnlEtv~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~tkt~imvGl-GET~ee~~etl~~Lr 300 (375)
.+.++.+.+.|++.+-.+=-|.+ . ..-+.+++.++++.+.+... | +.-+|+|. +.+-+|.++..+...
T Consensus 24 ~~lv~~~~~~Gv~gi~v~GstGE-----~--~~Ls~~Er~~l~~~~~~~~~-g---~~pvi~gv~~~~t~~ai~~a~~A~ 92 (294)
T TIGR02313 24 RELIEFQIEGGSHAISVGGTSGE-----P--GSLTLEERKQAIENAIDQIA-G---RIPFAPGTGALNHDETLELTKFAE 92 (294)
T ss_pred HHHHHHHHHcCCCEEEECccCcc-----c--ccCCHHHHHHHHHHHHHHhC-C---CCcEEEECCcchHHHHHHHHHHHH
Confidence 44556666667664322111111 0 23567888888887776433 2 45678888 467788888888888
Q ss_pred HcCCcEEeee
Q 017200 301 AAGVDVMTFG 310 (375)
Q Consensus 301 elgvd~v~i~ 310 (375)
++|+|.+-+.
T Consensus 93 ~~Gad~v~v~ 102 (294)
T TIGR02313 93 EAGADAAMVI 102 (294)
T ss_pred HcCCCEEEEc
Confidence 8888866553
No 339
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=75.59 E-value=5.3 Score=38.76 Aligned_cols=23 Identities=22% Similarity=0.222 Sum_probs=13.6
Q ss_pred HHHHHHHHH-Hhhhhhhccchhhh
Q 017200 331 FERYRALGM-EMGFRYVASGPMVR 353 (375)
Q Consensus 331 ~~~l~~~a~-~~gf~~~~sgp~vr 353 (375)
.++++.++. .-||.|+.|-|-|-
T Consensus 157 ~eri~~i~~~a~gFIY~vS~~GvT 180 (263)
T CHL00200 157 KSRIQKIARAAPGCIYLVSTTGVT 180 (263)
T ss_pred HHHHHHHHHhCCCcEEEEcCCCCC
Confidence 344555444 36799987655543
No 340
>COG1751 Uncharacterized conserved protein [Function unknown]
Probab=75.56 E-value=40 Score=30.48 Aligned_cols=111 Identities=17% Similarity=0.289 Sum_probs=65.4
Q ss_pred CCcchHHHHH-HHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCCCcEEEeec--CCCCC------ChHHHHH
Q 017200 157 PDPDEPTNVA-EAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALV--PDFRG------NNGCVRE 227 (375)
Q Consensus 157 ld~eEi~~~a-~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p~i~Ie~l~--pd~~g------~~e~l~~ 227 (375)
-..++.++.| +.+.++|++++|+-|..... +...++++ .. ++.|-+.+ ..|.. ++|.=+.
T Consensus 10 eNT~~tle~a~erA~elgik~~vVAS~tG~t-----A~k~lemv---eg---~lkvVvVthh~Gf~e~g~~e~~~E~~~~ 78 (186)
T COG1751 10 ENTDETLEIAVERAKELGIKHIVVASSTGYT-----ALKALEMV---EG---DLKVVVVTHHAGFEEKGTQEMDEEVRKE 78 (186)
T ss_pred cchHHHHHHHHHHHHhcCcceEEEEecccHH-----HHHHHHhc---cc---CceEEEEEeecccccCCceecCHHHHHH
Confidence 3456666654 66788999999999875431 22233333 22 23332222 12211 5777788
Q ss_pred HHHcCcccc--cccccchH-HHHHHhcCCCCCHHHHHHHHHHHHHhCCCCceEE--EeEEE
Q 017200 228 VAKSGLNVF--AHNIETVE-ELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTK--TSIML 283 (375)
Q Consensus 228 L~~aGldv~--~hnlEtv~-rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~tk--t~imv 283 (375)
|++-|.+++ .|.+..++ .+.++.. +++ .++++....+.+..|+.++ ..||.
T Consensus 79 L~erGa~v~~~sHalSg~eRsis~kfG--G~~---p~eiiAetLR~fg~G~KVcvEItiMA 134 (186)
T COG1751 79 LKERGAKVLTQSHALSGVERSISRKFG--GYS---PLEIIAETLRMFGQGVKVCVEITIMA 134 (186)
T ss_pred HHHcCceeeeehhhhhcchhhhhhhcC--Ccc---hHHHHHHHHHHhcCCcEEEEEEEEEe
Confidence 999999988 45577776 5556654 333 3555555555676787664 45554
No 341
>PF01136 Peptidase_U32: Peptidase family U32 This is family U32 in the peptidase classification. ; InterPro: IPR001539 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This is a group of peptidases belonging to MEROPS peptidase family U32 (clan U-). The type example is collagenase (gene prtC) from Porphyromonas gingivalis (Bacteroides gingivalis) [], which is an enzyme that degrades type I collagen and that seems to require a metal cofactor. The product of PrtC is evolutionary related to a number of uncharacterised proteins with a well conserved region containing two cysteines.; GO: 0008233 peptidase activity, 0006508 proteolysis
Probab=75.38 E-value=21 Score=33.18 Aligned_cols=68 Identities=21% Similarity=0.226 Sum_probs=47.5
Q ss_pred chHHHHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCCCcEEEeecCCCCCChHHHHHHHHcCccccccc
Q 017200 160 DEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHN 239 (375)
Q Consensus 160 eEi~~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGldv~~hn 239 (375)
+++.+.++.+.++|++.|++. + ..+++.+++..|++.|.+...-..-|.+.++.+.+.|++.+...
T Consensus 2 ~~~~~~l~~l~~~g~dgi~v~--------~------~g~~~~~k~~~~~~~i~~~~~~nv~N~~s~~~~~~~G~~~i~ls 67 (233)
T PF01136_consen 2 EELEKYLDKLKELGVDGILVS--------N------PGLLELLKELGPDLKIIADYSLNVFNSESARFLKELGASRITLS 67 (233)
T ss_pred hHHHHHHHHHHhCCCCEEEEc--------C------HHHHHHHHHhCCCCcEEEecCccCCCHHHHHHHHHcCCCEEEEC
Confidence 578888999999999998765 2 23566677777777776654432226777777777777766555
Q ss_pred cc
Q 017200 240 IE 241 (375)
Q Consensus 240 lE 241 (375)
.|
T Consensus 68 ~E 69 (233)
T PF01136_consen 68 PE 69 (233)
T ss_pred cc
Confidence 44
No 342
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=75.17 E-value=11 Score=35.16 Aligned_cols=74 Identities=16% Similarity=0.242 Sum_probs=49.5
Q ss_pred cchHHHHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCCCcEEEeecCCCCCChHHHHH-HHHcCccccc
Q 017200 159 PDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVRE-VAKSGLNVFA 237 (375)
Q Consensus 159 ~eEi~~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p~i~Ie~l~pd~~g~~e~l~~-L~~aGldv~~ 237 (375)
..++.+.++.+.++|++++++++.++..-. .| ...++++++++.. ++.|-+ .+... +.+.++. +.+.|+|.+.
T Consensus 152 ~~~~~~~~~~~~~~G~d~i~i~~i~~~g~~-~g--~~~~~~~~i~~~~-~ipvia-~GGi~-s~~di~~~l~~~gadgV~ 225 (232)
T TIGR03572 152 GRDPVEWAREAEQLGAGEILLNSIDRDGTM-KG--YDLELIKTVSDAV-SIPVIA-LGGAG-SLDDLVEVALEAGASAVA 225 (232)
T ss_pred CCCHHHHHHHHHHcCCCEEEEeCCCccCCc-CC--CCHHHHHHHHhhC-CCCEEE-ECCCC-CHHHHHHHHHHcCCCEEE
Confidence 456788899999999999999997653221 22 2467888888764 233332 23332 6677777 8888988654
Q ss_pred c
Q 017200 238 H 238 (375)
Q Consensus 238 h 238 (375)
.
T Consensus 226 v 226 (232)
T TIGR03572 226 A 226 (232)
T ss_pred E
Confidence 3
No 343
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=74.89 E-value=1e+02 Score=31.32 Aligned_cols=120 Identities=17% Similarity=0.249 Sum_probs=73.2
Q ss_pred HHHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHh-CCCcEEEeecCCCCCChHHHHHHHH--cCccccccc
Q 017200 163 TNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKEL-KPNMLIEALVPDFRGNNGCVREVAK--SGLNVFAHN 239 (375)
Q Consensus 163 ~~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~-~p~i~Ie~l~pd~~g~~e~l~~L~~--aGldv~~hn 239 (375)
.+.|.++++.|.=+++ +..+. .+..++.++..+.. ...+.|.+-+-+ .+.+.++.|.+ +|+|++-.
T Consensus 60 ~~mA~~la~~g~~~~i-----Hk~~~---~e~~~~fv~~~~~~~~~~~~vavG~~~--~d~er~~~L~~~~~g~D~ivi- 128 (346)
T PRK05096 60 FEMAKALASFDILTAV-----HKHYS---VEEWAAFVNNSSADVLKHVMVSTGTSD--ADFEKTKQILALSPALNFICI- 128 (346)
T ss_pred HHHHHHHHHCCCeEEE-----ecCCC---HHHHHHHHHhccccccceEEEEecCCH--HHHHHHHHHHhcCCCCCEEEE-
Confidence 4568888888874443 33232 44456666665532 223333222212 15678888888 48887643
Q ss_pred ccchHHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcCCcEEeeecCCCC
Q 017200 240 IETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQYMRP 315 (375)
Q Consensus 240 lEtv~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~tkt~imvGlGET~ee~~etl~~Lrelgvd~v~i~qYl~P 315 (375)
+++ ...-+..++.++++|+.+|. ..||.|=--|.|...+ |-+.|.|.+.+| +=|
T Consensus 129 -D~A----------hGhs~~~i~~ik~ik~~~P~-----~~vIaGNV~T~e~a~~----Li~aGAD~vKVG--IGp 182 (346)
T PRK05096 129 -DVA----------NGYSEHFVQFVAKAREAWPD-----KTICAGNVVTGEMVEE----LILSGADIVKVG--IGP 182 (346)
T ss_pred -ECC----------CCcHHHHHHHHHHHHHhCCC-----CcEEEecccCHHHHHH----HHHcCCCEEEEc--ccC
Confidence 221 22346668899999997765 3578887678876554 556899987766 446
No 344
>TIGR00683 nanA N-acetylneuraminate lyase. N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate.
Probab=74.89 E-value=34 Score=33.34 Aligned_cols=77 Identities=12% Similarity=0.107 Sum_probs=45.1
Q ss_pred hHHHHHHHHcC-cccccccccchHHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEec-CCCHHHHHHHHHHH
Q 017200 222 NGCVREVAKSG-LNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGC-GETPDQVVSTMEKV 299 (375)
Q Consensus 222 ~e~l~~L~~aG-ldv~~hnlEtv~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~tkt~imvGl-GET~ee~~etl~~L 299 (375)
.+.++.+.+.| ++.+-.+=-|-+- ..-+.+++.++++.+.+... | +..+|+|. +-+-+|.++..+..
T Consensus 24 ~~~i~~~i~~G~v~gi~~~GstGE~-------~~Lt~eEr~~~~~~~~~~~~-~---~~pvi~gv~~~~t~~~i~la~~a 92 (290)
T TIGR00683 24 RQIIRHNIDKMKVDGLYVGGSTGEN-------FMLSTEEKKEIFRIAKDEAK-D---QIALIAQVGSVNLKEAVELGKYA 92 (290)
T ss_pred HHHHHHHHhCCCcCEEEECCccccc-------ccCCHHHHHHHHHHHHHHhC-C---CCcEEEecCCCCHHHHHHHHHHH
Confidence 33455556666 6654222111110 12456777777777776532 2 34577777 36777777888888
Q ss_pred HHcCCcEEee
Q 017200 300 RAAGVDVMTF 309 (375)
Q Consensus 300 relgvd~v~i 309 (375)
.++|+|.+-+
T Consensus 93 ~~~Gad~v~v 102 (290)
T TIGR00683 93 TELGYDCLSA 102 (290)
T ss_pred HHhCCCEEEE
Confidence 8888776554
No 345
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=74.76 E-value=58 Score=29.95 Aligned_cols=136 Identities=18% Similarity=0.237 Sum_probs=77.4
Q ss_pred CcchHHHHHHHHHhcCCcEEEEEeee-----CCCCCc----ccHHHHHHHHHHHHHhCC-CcEEEeecC-CCC-CChHHH
Q 017200 158 DPDEPTNVAEAIASWGLDYVVITSVD-----RDDLAD----QGSGHFAQTVRKLKELKP-NMLIEALVP-DFR-GNNGCV 225 (375)
Q Consensus 158 d~eEi~~~a~al~~~G~~eIvLTsgd-----r~dl~d----~G~~~~~~lir~Ik~~~p-~i~Ie~l~p-d~~-g~~e~l 225 (375)
++++..+.|+.+.+.|++.|-|-.+. +.|-.. ...+.+.++++++++..+ .+.+.+-.+ +.. ...+.+
T Consensus 65 ~~~~~~~aa~~~~~aG~d~ieln~g~p~~~~~~~~~G~~l~~~~~~~~eii~~v~~~~~~~v~vk~r~~~~~~~~~~~~~ 144 (231)
T cd02801 65 DPETLAEAAKIVEELGADGIDLNMGCPSPKVTKGGAGAALLKDPELVAEIVRAVREAVPIPVTVKIRLGWDDEEETLELA 144 (231)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEeCCCCHHHHhCCCeeehhcCCHHHHHHHHHHHHHhcCCCEEEEEeeccCCchHHHHHH
Confidence 68899999999999999999987663 111100 124567889999987764 344443222 111 124556
Q ss_pred HHHHHcCcccccccccchHHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEE-ecCCCHHHHHHHHHHHHHcCC
Q 017200 226 REVAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIML-GCGETPDQVVSTMEKVRAAGV 304 (375)
Q Consensus 226 ~~L~~aGldv~~hnlEtv~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~tkt~imv-GlGET~ee~~etl~~Lrelgv 304 (375)
+.+.++|+|.+...--+.+. ... ...+ ++.++.+++.. . + -+|. |--.|.+++.+.+. .-++
T Consensus 145 ~~l~~~Gvd~i~v~~~~~~~---~~~-~~~~----~~~~~~i~~~~-~-i----pvi~~Ggi~~~~d~~~~l~---~~ga 207 (231)
T cd02801 145 KALEDAGASALTVHGRTREQ---RYS-GPAD----WDYIAEIKEAV-S-I----PVIANGDIFSLEDALRCLE---QTGV 207 (231)
T ss_pred HHHHHhCCCEEEECCCCHHH---cCC-CCCC----HHHHHHHHhCC-C-C----eEEEeCCCCCHHHHHHHHH---hcCC
Confidence 77888898877542111111 112 2333 45556666521 1 2 2222 22357777666553 3489
Q ss_pred cEEeee
Q 017200 305 DVMTFG 310 (375)
Q Consensus 305 d~v~i~ 310 (375)
|.|-++
T Consensus 208 d~V~ig 213 (231)
T cd02801 208 DGVMIG 213 (231)
T ss_pred CEEEEc
Confidence 999887
No 346
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=74.66 E-value=19 Score=34.82 Aligned_cols=122 Identities=13% Similarity=0.144 Sum_probs=70.0
Q ss_pred CcchHHHHHHHHHhcCCcEEEEEeee-CCC---CCcccHHHHHHHHHHHHHhCCCcEEEeecCCCCCChHHHHHHHHcCc
Q 017200 158 DPDEPTNVAEAIASWGLDYVVITSVD-RDD---LADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGL 233 (375)
Q Consensus 158 d~eEi~~~a~al~~~G~~eIvLTsgd-r~d---l~d~G~~~~~~lir~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGl 233 (375)
+.|.++++|+++++.|+..+.=.+=+ |.. +..-|.+ -.+.++++++.+ ++. +++--+ +.+.++.+.+ .+
T Consensus 27 s~e~~~~~a~~~~~~g~~~~r~g~~kpRts~~sf~G~G~~-gl~~L~~~~~~~-Gl~--~~Tev~--d~~~v~~~~e-~v 99 (250)
T PRK13397 27 SYDHIRLAASSAKKLGYNYFRGGAYKPRTSAASFQGLGLQ-GIRYLHEVCQEF-GLL--SVSEIM--SERQLEEAYD-YL 99 (250)
T ss_pred CHHHHHHHHHHHHHcCCCEEEecccCCCCCCcccCCCCHH-HHHHHHHHHHHc-CCC--EEEeeC--CHHHHHHHHh-cC
Confidence 56788999999999999766522222 211 1112444 344555555554 232 233223 6788888887 58
Q ss_pred ccccccc-cchHHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcCCcEE
Q 017200 234 NVFAHNI-ETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVM 307 (375)
Q Consensus 234 dv~~hnl-Etv~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~tkt~imvGlGET~ee~~etl~~Lrelgvd~v 307 (375)
|++..+- +..+ .+.|+.+.+.... +.+|+++| -|.+|+...++.+++.|..-+
T Consensus 100 dilqIgs~~~~n----------------~~LL~~va~tgkP-Vilk~G~~----~t~~e~~~A~e~i~~~Gn~~i 153 (250)
T PRK13397 100 DVIQVGARNMQN----------------FEFLKTLSHIDKP-ILFKRGLM----ATIEEYLGALSYLQDTGKSNI 153 (250)
T ss_pred CEEEECcccccC----------------HHHHHHHHccCCe-EEEeCCCC----CCHHHHHHHHHHHHHcCCCeE
Confidence 9887642 1111 3444444443222 45666644 477888888888877776433
No 347
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=74.53 E-value=37 Score=33.45 Aligned_cols=101 Identities=15% Similarity=0.269 Sum_probs=61.2
Q ss_pred hHHHHHHHHcCcccccccccchHHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecC-CCHHHHHHHHHHHH
Q 017200 222 NGCVREVAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCG-ETPDQVVSTMEKVR 300 (375)
Q Consensus 222 ~e~l~~L~~aGldv~~hnlEtv~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~tkt~imvGlG-ET~ee~~etl~~Lr 300 (375)
.+.++.+.+.|++.+-.+=-|-+ . ..-+.+++.++++.+.+... | +..+|+|.| .+-+|.++..+..+
T Consensus 32 ~~lv~~li~~Gv~Gi~v~GstGE-~------~~Lt~eEr~~v~~~~~~~~~-g---rvpvi~Gv~~~~t~~ai~~a~~A~ 100 (309)
T cd00952 32 ARLVERLIAAGVDGILTMGTFGE-C------ATLTWEEKQAFVATVVETVA-G---RVPVFVGATTLNTRDTIARTRALL 100 (309)
T ss_pred HHHHHHHHHcCCCEEEECccccc-c------hhCCHHHHHHHHHHHHHHhC-C---CCCEEEEeccCCHHHHHHHHHHHH
Confidence 34556666777665432211111 0 13467888888888887543 2 456888984 68888999999999
Q ss_pred HcCCcEEeeecCCCCCCCCCCccccCCHHHHHHHHHHHHHh
Q 017200 301 AAGVDVMTFGQYMRPSKRHMPVSEYITPEAFERYRALGMEM 341 (375)
Q Consensus 301 elgvd~v~i~qYl~P~~~~~~v~~~v~pe~~~~l~~~a~~~ 341 (375)
++|+|.+-+. .|. ..+.. ..+-++++++++..-
T Consensus 101 ~~Gad~vlv~---~P~--y~~~~---~~~l~~yf~~va~a~ 133 (309)
T cd00952 101 DLGADGTMLG---RPM--WLPLD---VDTAVQFYRDVAEAV 133 (309)
T ss_pred HhCCCEEEEC---CCc--CCCCC---HHHHHHHHHHHHHhC
Confidence 9998876653 221 11110 134466677776654
No 348
>PRK13586 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=74.15 E-value=56 Score=30.98 Aligned_cols=126 Identities=12% Similarity=0.185 Sum_probs=74.4
Q ss_pred chHHHHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCC-CcEEEeecCCCCCChHHHHHHHHcCcccccc
Q 017200 160 DEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKP-NMLIEALVPDFRGNNGCVREVAKSGLNVFAH 238 (375)
Q Consensus 160 eEi~~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p-~i~Ie~l~pd~~g~~e~l~~L~~aGldv~~h 238 (375)
.+|++.|+...+.|+++++|.=-+.. .+ ...-.++|++|.+... .+.+. +.. .+.+.++.+.++|.+.+-.
T Consensus 30 ~dP~~~a~~~~~~ga~~lhivDLd~a--~~--~~~n~~~i~~i~~~~~~~v~vG---GGI-rs~e~~~~~l~~Ga~kvvi 101 (232)
T PRK13586 30 GNPIEIASKLYNEGYTRIHVVDLDAA--EG--VGNNEMYIKEISKIGFDWIQVG---GGI-RDIEKAKRLLSLDVNALVF 101 (232)
T ss_pred CCHHHHHHHHHHCCCCEEEEEECCCc--CC--CcchHHHHHHHHhhCCCCEEEe---CCc-CCHHHHHHHHHCCCCEEEE
Confidence 58999999999999999999854432 12 1222488888877321 12221 122 2678899999999998766
Q ss_pred cccchH--HHHHHhcCCCCCHHHHHHHHHHHHHhC-CCCceEEEeE-----EE--ecCCCHHHHHHHHHHHHHcCCcEEe
Q 017200 239 NIETVE--ELQSAVRDHRANFKQSLDVLMMAKDYV-PAGTLTKTSI-----ML--GCGETPDQVVSTMEKVRAAGVDVMT 308 (375)
Q Consensus 239 nlEtv~--rl~~~mr~r~~s~~~~l~vl~~ak~~~-p~Gl~tkt~i-----mv--GlGET~ee~~etl~~Lrelgvd~v~ 308 (375)
+-++.+ ++++. +.+.+ +.-+.+.-++ ++ |--|+..+..+.++.+.++++..+-
T Consensus 102 gt~a~~~p~~~~~-----------------~~~~~g~~~ivvslD~~~~~~v~~~gw~~~~~~~~e~~~~l~~~g~~~ii 164 (232)
T PRK13586 102 STIVFTNFNLFHD-----------------IVREIGSNRVLVSIDYDNTKRVLIRGWKEKSMEVIDGIKKVNELELLGII 164 (232)
T ss_pred CchhhCCHHHHHH-----------------HHHHhCCCCEEEEEEcCCCCEEEccCCeeCCCCHHHHHHHHHhcCCCEEE
Confidence 544321 33322 22222 1112222222 22 2224555777888999999986655
Q ss_pred ee
Q 017200 309 FG 310 (375)
Q Consensus 309 i~ 310 (375)
+.
T Consensus 165 ~t 166 (232)
T PRK13586 165 FT 166 (232)
T ss_pred Ee
Confidence 53
No 349
>PRK11320 prpB 2-methylisocitrate lyase; Provisional
Probab=74.02 E-value=73 Score=31.48 Aligned_cols=185 Identities=17% Similarity=0.155 Sum_probs=0.0
Q ss_pred HHHHHhcCCcEEEEEee----eCCCCCcccHHHHHHHHHHHHHhCCCcEEEeecCCCCC------ChHHHHHHHHcCccc
Q 017200 166 AEAIASWGLDYVVITSV----DRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRG------NNGCVREVAKSGLNV 235 (375)
Q Consensus 166 a~al~~~G~~eIvLTsg----dr~dl~d~G~~~~~~lir~Ik~~~p~i~Ie~l~pd~~g------~~e~l~~L~~aGldv 235 (375)
|+.+.+.|++-+-++|. ..--+||.|.-.+.+++..+++....+.|.++.---.| -...++.+.++|+-.
T Consensus 30 Ari~e~~Gf~ai~~Sg~~~a~~~lG~PD~g~l~~~e~~~~~~~I~~~~~iPviaD~d~GyG~~~~v~r~V~~~~~aGaag 109 (292)
T PRK11320 30 ALLAERAGFKAIYLSGGGVAAASLGLPDLGITTLDDVLIDVRRITDACDLPLLVDIDTGFGGAFNIARTVKSMIKAGAAA 109 (292)
T ss_pred HHHHHHcCCCEEEeCHHHHHhHhcCCCCCCCCCHHHHHHHHHHHHhccCCCEEEECCCCCCCHHHHHHHHHHHHHcCCeE
Q ss_pred ccccccchH-HHHHHhcCCC-----CCHHHHHHHHHHHHHhCCCC---ceEEEeEEEecCCCHHHHHHHHHHHHHcCCcE
Q 017200 236 FAHNIETVE-ELQSAVRDHR-----ANFKQSLDVLMMAKDYVPAG---TLTKTSIMLGCGETPDQVVSTMEKVRAAGVDV 306 (375)
Q Consensus 236 ~~hnlEtv~-rl~~~mr~r~-----~s~~~~l~vl~~ak~~~p~G---l~tkt~imvGlGET~ee~~etl~~Lrelgvd~ 306 (375)
++. + .++++-|+.. .+.++..+-|+.+++....- +.-.|+-....| .+|.++-.+.-.+.|.|.
T Consensus 110 i~I-----EDq~~pK~cg~~~~~~lv~~ee~~~kI~Aa~~a~~~~d~~IiARTDa~~~~g--~deAI~Ra~aY~eAGAD~ 182 (292)
T PRK11320 110 VHI-----EDQVGAKRCGHRPNKEIVSQEEMVDRIKAAVDARTDPDFVIMARTDALAVEG--LDAAIERAQAYVEAGADM 182 (292)
T ss_pred EEE-----ecCCCccccCCCCCCcccCHHHHHHHHHHHHHhccCCCeEEEEecCcccccC--HHHHHHHHHHHHHcCCCE
Q ss_pred EeeecCCCCCC---------------------CCCCccccCCHHHHHHHHHHHHHhhhhhhccchhh-hhhcchhHHHHH
Q 017200 307 MTFGQYMRPSK---------------------RHMPVSEYITPEAFERYRALGMEMGFRYVASGPMV-RSSYKVVGWCYY 364 (375)
Q Consensus 307 v~i~qYl~P~~---------------------~~~~v~~~v~pe~~~~l~~~a~~~gf~~~~sgp~v-rssy~a~~~~~~ 364 (375)
|-+ |+. ...+....++.+++..| ||..+.-|+.. |+.|+|-+..+.
T Consensus 183 ifi-----~~~~~~~~i~~~~~~~~~Pl~~n~~~~~~~p~~s~~~L~~l-------Gv~~v~~~~~~~~aa~~a~~~~~~ 250 (292)
T PRK11320 183 IFP-----EAMTELEMYRRFADAVKVPILANITEFGATPLFTTEELASA-------GVAMVLYPLSAFRAMNKAAENVYE 250 (292)
T ss_pred EEe-----cCCCCHHHHHHHHHhcCCCEEEEeccCCCCCCCCHHHHHHc-------CCcEEEEChHHHHHHHHHHHHHHH
Q ss_pred HHHhh
Q 017200 365 LIFNY 369 (375)
Q Consensus 365 ~~~~~ 369 (375)
.+.+.
T Consensus 251 ~l~~~ 255 (292)
T PRK11320 251 AIRRD 255 (292)
T ss_pred HHHHc
No 350
>PLN02417 dihydrodipicolinate synthase
Probab=73.72 E-value=38 Score=32.84 Aligned_cols=77 Identities=12% Similarity=0.139 Sum_probs=45.6
Q ss_pred hHHHHHHHHcCcccccccccchHHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecC-CCHHHHHHHHHHHH
Q 017200 222 NGCVREVAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCG-ETPDQVVSTMEKVR 300 (375)
Q Consensus 222 ~e~l~~L~~aGldv~~hnlEtv~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~tkt~imvGlG-ET~ee~~etl~~Lr 300 (375)
.+.++.+.+.|++.+-.+=-|-+- ..-+.+++.++++.+.+.... +.-+|+|.| .+-+|.++..+..+
T Consensus 25 ~~~i~~l~~~Gv~Gi~~~GstGE~-------~~ls~~Er~~~~~~~~~~~~~----~~pvi~gv~~~~t~~~i~~a~~a~ 93 (280)
T PLN02417 25 DSLVNMQIENGAEGLIVGGTTGEG-------QLMSWDEHIMLIGHTVNCFGG----KIKVIGNTGSNSTREAIHATEQGF 93 (280)
T ss_pred HHHHHHHHHcCCCEEEECccCcch-------hhCCHHHHHHHHHHHHHHhCC----CCcEEEECCCccHHHHHHHHHHHH
Confidence 345556666676654322111110 124567777777777664322 345777774 46777788888888
Q ss_pred HcCCcEEee
Q 017200 301 AAGVDVMTF 309 (375)
Q Consensus 301 elgvd~v~i 309 (375)
++|.|.+-+
T Consensus 94 ~~Gadav~~ 102 (280)
T PLN02417 94 AVGMHAALH 102 (280)
T ss_pred HcCCCEEEE
Confidence 888776555
No 351
>PF06180 CbiK: Cobalt chelatase (CbiK); InterPro: IPR010388 This group, typified by Salmonella typhimurium CbiK, contains anaerobic cobalt chelatases that act in the anaerobic cobalamin biosynthesis pathway [, ]. Cobalamin (vitamin B12) can be complexed with metal via ATP-dependent reactions (aerobic pathway) (e.g., in Pseudomonas denitrificans) or via ATP-independent reactions (anaerobic pathway) (e.g., in S. typhimurium) [, ]. The corresponding cobalt chelatases are not homologous. This group belongs to the class of ATP-independent, single-subunit chelatases that also includes distantly related protoporphyrin IX (PPIX) ferrochelatase (HemH) (Class II chelatases) []. The structure of S. typhimurium CbiK shows that it has a remarkably similar topology to Bacillus subtilis ferrochelatase despite only weak sequence conservation []. Both enzymes contain a histidine residue identified as the metal ion ligand, but CbiK contains a second histidine in place of the glutamic acid residue identified as a general base in PPIX ferrochelatase []. Site-directed mutagenesis has confirmed a role for this histidine and a nearby glutamic acid in cobalt binding, modulating metal ion specificity as well as catalytic efficiency []. It should be noted that CysG and Met8p, which are multifunctional proteins associated with siroheme biosynthesis, include chelatase activity and can therefore be considered as the third class of chelatases []. As with the class II chelatases, they do not require ATP for activity. However, they are not structurally similar to HemH or CbiK, and it is likely that they have arisen by the acquisition of a chelatase function within a dehydrogenase catalytic framework [, ].; GO: 0016852 sirohydrochlorin cobaltochelatase activity; PDB: 1QGO_A 2XWP_A 2XVZ_A 2XVX_A 2XVY_A.
Probab=73.51 E-value=18 Score=35.16 Aligned_cols=164 Identities=13% Similarity=0.167 Sum_probs=80.1
Q ss_pred CCcchHHHHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCCC-cEEEeecCCCCC-----ChHHHHHHHH
Q 017200 157 PDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPN-MLIEALVPDFRG-----NNGCVREVAK 230 (375)
Q Consensus 157 ld~eEi~~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p~-i~Ie~l~pd~~g-----~~e~l~~L~~ 230 (375)
...+.+.+..+.+.+.|+++|++++-+-- + | ..|-++.+.+++.... -.|.+-.|-+.. +.+.++.+.+
T Consensus 55 ~~i~~~~eaL~~L~~~G~~~V~VQplhii--p--G-~Ey~~l~~~v~~~~~~F~~i~~g~PLL~~~g~~~~~~D~~~va~ 129 (262)
T PF06180_consen 55 IKIDSPEEALAKLADEGYTEVVVQPLHII--P--G-EEYEKLRATVEAYKHDFKKIVLGRPLLYTMGQENSPEDYEAVAE 129 (262)
T ss_dssp -----HHHHHHHHHHCT--EEEEEE--SC--S--S-HHHHHHHHHHHHHCCCSSEEEEE--SCSS-----SHHHHHHHHH
T ss_pred CCcCCHHHHHHHHHHCCCCEEEEeeccee--C--c-HhHHHHHHHHHHhhccCCeEEecccccccccccCChHHHHHHHH
Confidence 44567777788899999999999998642 2 2 2245555555443222 244444443321 3444444444
Q ss_pred cCcc------------cccccccchHHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHH
Q 017200 231 SGLN------------VFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEK 298 (375)
Q Consensus 231 aGld------------v~~hnlEtv~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~tkt~imvGlGET~ee~~etl~~ 298 (375)
+=.+ .+.|+-+ +........|+..-+. .| ..++.+|.-|-.-++.+.+..
T Consensus 130 aL~~~~~~~~~~~a~vlmGHGt~-------------h~an~~Y~~l~~~l~~--~~---~~~v~vgtvEG~P~~~~vi~~ 191 (262)
T PF06180_consen 130 ALAEEFPKKRKDEAVVLMGHGTP-------------HPANAAYSALQAMLKK--HG---YPNVFVGTVEGYPSLEDVIAR 191 (262)
T ss_dssp HHHCCS-TT-TTEEEEEEE---S-------------CHHHHHHHHHHHHHHC--CT----TTEEEEETTSSSBHHHHHHH
T ss_pred HHHHhccccCCCCEEEEEeCCCC-------------CCccHHHHHHHHHHHh--CC---CCeEEEEEeCCCCCHHHHHHH
Confidence 3212 2233311 1122233334433331 11 245777875555567788889
Q ss_pred HHHcCCcEEeeecCCCCCCCCCCccccCCHHHHHHHHHHHHHhhhhh
Q 017200 299 VRAAGVDVMTFGQYMRPSKRHMPVSEYITPEAFERYRALGMEMGFRY 345 (375)
Q Consensus 299 Lrelgvd~v~i~qYl~P~~~~~~v~~~v~pe~~~~l~~~a~~~gf~~ 345 (375)
|++.++..|.+.++|-=...| +.+-+..++-+-|+..=.+.||..
T Consensus 192 L~~~g~k~V~L~PlMlVAGdH--a~nDmaGde~dSWks~L~~~G~~v 236 (262)
T PF06180_consen 192 LKKKGIKKVHLIPLMLVAGDH--AKNDMAGDEEDSWKSRLEAAGFEV 236 (262)
T ss_dssp HHHHT-SEEEEEEESSS--HH--HHCCCCSSSTTSHHHHHHHTT-EE
T ss_pred HHhcCCCeEEEEecccccchh--hhhhhcCCCcchHHHHHHHCCCEE
Confidence 999999988888776332222 122223334466888878888853
No 352
>PF00490 ALAD: Delta-aminolevulinic acid dehydratase; InterPro: IPR001731 Tetrapyrroles are large macrocyclic compounds derived from a common biosynthetic pathway []. The end-product, uroporphyrinogen III, is used to synthesise a number of important molecules, including vitamin B12, haem, sirohaem, chlorophyll, coenzyme F430 and phytochromobilin []. The first stage in tetrapyrrole synthesis is the synthesis of 5-aminoaevulinic acid ALA via two possible routes: (1) condensation of succinyl CoA and glycine (C4 pathway) using ALA synthase (2.3.1.37 from EC), or (2) decarboxylation of glutamate (C5 pathway) via three different enzymes, glutamyl-tRNA synthetase (6.1.1.17 from EC) to charge a tRNA with glutamate, glutamyl-tRNA reductase (1.2.1.70 from EC) to reduce glutamyl-tRNA to glutamate-1-semialdehyde (GSA), and GSA aminotransferase (5.4.3.8 from EC) to catalyse a transamination reaction to produce ALA. The second stage is to convert ALA to uroporphyrinogen III, the first macrocyclic tetrapyrrolic structure in the pathway. This is achieved by the action of three enzymes in one common pathway: porphobilinogen (PBG) synthase (or ALA dehydratase, 4.2.1.24 from EC) to condense two ALA molecules to generate porphobilinogen; hydroxymethylbilane synthase (or PBG deaminase, 2.5.1.61 from EC) to polymerise four PBG molecules into preuroporphyrinogen (tetrapyrrole structure); and uroporphyrinogen III synthase (4.2.1.75 from EC) to link two pyrrole units together (rings A and D) to yield uroporphyrinogen III. Uroporphyrinogen III is the first branch point of the pathway. To synthesise cobalamin (vitamin B12), sirohaem, and coenzyme F430, uroporphyrinogen III needs to be converted into precorrin-2 by the action of uroporphyrinogen III methyltransferase (2.1.1.107 from EC). To synthesise haem and chlorophyll, uroporphyrinogen III needs to be decarboxylated into coproporphyrinogen III by the action of uroporphyrinogen III decarboxylase (4.1.1.37 from EC) []. This entry represents porphobilinogen (PBG) synthase (PBGS, or 5-aminoaevulinic acid dehydratase, or ALAD, 4.2.1.24 from EC), which functions during the second stage of tetrapyrrole biosynthesis. This enzyme catalyses a Knorr-type condensation reaction between two molecules of ALA to generate porphobilinogen, the pyrrolic building block used in later steps []. The structure of the enzyme is based on a TIM barrel topology made up of eight identical subunits, where each subunit binds to a metal ion that is essential for activity, usually zinc (in yeast, mammals and certain bacteria) or magnesium (in plants and other bacteria). A lysine has been implicated in the catalytic mechanism []. The lack of PBGS enzyme causes a rare porphyric disorder known as ALAD porphyria, which appears to involve conformational changes in the enzyme [.; GO: 0004655 porphobilinogen synthase activity, 0046872 metal ion binding, 0033014 tetrapyrrole biosynthetic process; PDB: 2C1H_A 1W1Z_A 1GZG_B 1W5O_B 1W5Q_B 2C18_A 1B4K_A 2C19_B 1W56_B 2C13_B ....
Probab=73.02 E-value=7.3 Score=38.93 Aligned_cols=56 Identities=21% Similarity=0.343 Sum_probs=42.1
Q ss_pred CCcchHHHHHHHHHhcCCcEEEEEeeeCCCCCcc-c------HHHHHHHHHHHHHhCCCcEEE
Q 017200 157 PDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQ-G------SGHFAQTVRKLKELKPNMLIE 212 (375)
Q Consensus 157 ld~eEi~~~a~al~~~G~~eIvLTsgdr~dl~d~-G------~~~~~~lir~Ik~~~p~i~Ie 212 (375)
++.+.+++.++.+.++|++.|.|=|+..++..|. | -.-+...|+.||+.+|++.|-
T Consensus 54 ~sid~l~~~v~~~~~~GI~~v~lFgvi~~~~Kd~~gs~a~~~~g~v~~air~iK~~~pdl~vi 116 (324)
T PF00490_consen 54 YSIDSLVKEVEEAVDLGIRAVILFGVIDPSKKDEEGSEAYNPDGLVQRAIRAIKKAFPDLLVI 116 (324)
T ss_dssp EEHHHHHHHHHHHHHTT--EEEEEEE-SCSC-BSS-GGGGSTTSHHHHHHHHHHHHSTTSEEE
T ss_pred eCHHHHHHHHHHHHHCCCCEEEEEeeCCcccCCcchhcccCCCChHHHHHHHHHHhCCCcEEE
Confidence 6889999999999999999999999955555441 2 134788999999999998663
No 353
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=72.97 E-value=61 Score=31.92 Aligned_cols=139 Identities=15% Similarity=0.157 Sum_probs=80.6
Q ss_pred CCcchHHHHHHHHHhcCCcEEEEEeeeC----CCCCccc------HHHHHHHHHHHHHhCC-CcEEEeecC---CCCCCh
Q 017200 157 PDPDEPTNVAEAIASWGLDYVVITSVDR----DDLADQG------SGHFAQTVRKLKELKP-NMLIEALVP---DFRGNN 222 (375)
Q Consensus 157 ld~eEi~~~a~al~~~G~~eIvLTsgdr----~dl~d~G------~~~~~~lir~Ik~~~p-~i~Ie~l~p---d~~g~~ 222 (375)
-+++++.+.|+.+.+.|++.|-|-.+-. .+ ..+| .+.+.++++.|++..+ -+.+.+-.+ +.....
T Consensus 72 ~~~~~~~~aa~~~~~~G~d~IelN~gcP~~~~~~-~~~Gs~l~~~~~~~~ei~~~vr~~~~~pv~vKir~g~~~~~~~~~ 150 (319)
T TIGR00737 72 SDPDTMAEAAKINEELGADIIDINMGCPVPKITK-KGAGSALLRDPDLIGKIVKAVVDAVDIPVTVKIRIGWDDAHINAV 150 (319)
T ss_pred CCHHHHHHHHHHHHhCCCCEEEEECCCCHHHhcC-CCccchHhCCHHHHHHHHHHHHhhcCCCEEEEEEcccCCCcchHH
Confidence 4789999999999999999998877631 11 1122 2456788888887642 133333222 110024
Q ss_pred HHHHHHHHcCcccccccccchHHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHc
Q 017200 223 GCVREVAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAA 302 (375)
Q Consensus 223 e~l~~L~~aGldv~~hnlEtv~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~tkt~imvGlGET~ee~~etl~~Lrel 302 (375)
+.++.+.++|+|.+...--+.. .+++-.-.++.++.+++..+ +++ |..|=-.|.+++.+.+ +..
T Consensus 151 ~~a~~l~~~G~d~i~vh~r~~~--------~~~~~~~~~~~i~~i~~~~~--ipv---i~nGgI~~~~da~~~l---~~~ 214 (319)
T TIGR00737 151 EAARIAEDAGAQAVTLHGRTRA--------QGYSGEANWDIIARVKQAVR--IPV---IGNGDIFSPEDAKAML---ETT 214 (319)
T ss_pred HHHHHHHHhCCCEEEEEccccc--------ccCCCchhHHHHHHHHHcCC--CcE---EEeCCCCCHHHHHHHH---Hhh
Confidence 5667788899988754211111 11111223677777777432 221 1223336777777666 346
Q ss_pred CCcEEeeecC
Q 017200 303 GVDVMTFGQY 312 (375)
Q Consensus 303 gvd~v~i~qY 312 (375)
++|.|-++.-
T Consensus 215 gad~VmigR~ 224 (319)
T TIGR00737 215 GCDGVMIGRG 224 (319)
T ss_pred CCCEEEEChh
Confidence 8999888744
No 354
>PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed
Probab=72.67 E-value=55 Score=33.32 Aligned_cols=126 Identities=21% Similarity=0.307 Sum_probs=78.3
Q ss_pred CCcchHHHHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCCCcEEEeecCCCCCChHHHHHHHHcCcccc
Q 017200 157 PDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVF 236 (375)
Q Consensus 157 ld~eEi~~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGldv~ 236 (375)
.|.+.-++.++++.+.|+.-|.++-.+. .-++.++.|++..| +. ++.|..-+......-.++|+|-+
T Consensus 39 ~Dv~atv~Qi~~L~~aGceiVRvav~~~---------~~a~al~~I~~~~~-iP---lvADIHFd~~lAl~a~~~G~~~i 105 (360)
T PRK00366 39 ADVEATVAQIKRLARAGCEIVRVAVPDM---------EAAAALPEIKKQLP-VP---LVADIHFDYRLALAAAEAGADAL 105 (360)
T ss_pred hhHHHHHHHHHHHHHcCCCEEEEccCCH---------HHHHhHHHHHHcCC-CC---EEEecCCCHHHHHHHHHhCCCEE
Confidence 4566777788889999999988774322 13567778877654 22 23332226777777788888866
Q ss_pred cccccchHHHHHHhcCCCC-C-HHHHHHHHHHHHHhCCCCceEEEeEEEe---------cCC-CHHHHH----HHHHHHH
Q 017200 237 AHNIETVEELQSAVRDHRA-N-FKQSLDVLMMAKDYVPAGTLTKTSIMLG---------CGE-TPDQVV----STMEKVR 300 (375)
Q Consensus 237 ~hnlEtv~rl~~~mr~r~~-s-~~~~l~vl~~ak~~~p~Gl~tkt~imvG---------lGE-T~ee~~----etl~~Lr 300 (375)
-. +|... + .+...++++.|++. |+++..++=-| +|+ |.|-++ ++++.|+
T Consensus 106 RI------------NPGNig~~~~~v~~vv~~ak~~---~ipIRIGvN~GSL~~~~~~~yg~~t~eamveSAl~~~~~le 170 (360)
T PRK00366 106 RI------------NPGNIGKRDERVREVVEAAKDY---GIPIRIGVNAGSLEKDLLEKYGEPTPEALVESALRHAKILE 170 (360)
T ss_pred EE------------CCCCCCchHHHHHHHHHHHHHC---CCCEEEecCCccChHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence 33 22211 2 45666788888884 55555544333 344 655544 4567888
Q ss_pred HcCCcEEeee
Q 017200 301 AAGVDVMTFG 310 (375)
Q Consensus 301 elgvd~v~i~ 310 (375)
+++++-+-+.
T Consensus 171 ~~~f~~iviS 180 (360)
T PRK00366 171 ELGFDDIKIS 180 (360)
T ss_pred HCCCCcEEEE
Confidence 8998765553
No 355
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=72.66 E-value=37 Score=33.66 Aligned_cols=85 Identities=12% Similarity=0.105 Sum_probs=55.4
Q ss_pred HHHHHHHHcCcccccccccc-hHHHHHHhcCCC----CCHHHHHHHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHH
Q 017200 223 GCVREVAKSGLNVFAHNIET-VEELQSAVRDHR----ANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTME 297 (375)
Q Consensus 223 e~l~~L~~aGldv~~hnlEt-v~rl~~~mr~r~----~s~~~~l~vl~~ak~~~p~Gl~tkt~imvGlGET~ee~~etl~ 297 (375)
+..+.+.++|.|.+..|+-. ++.+.+. . .+ .+.+...++++.+++..|.+++++.-+=+|+ ++.++.++.++
T Consensus 79 ~aA~~~~~~g~d~IdiN~GCP~~~v~~~-g-~Gs~Ll~~~~~~~eiv~avr~~~~~~~pVsvKiR~g~-~~~~~~~~~a~ 155 (312)
T PRK10550 79 ENAARAVELGSWGVDLNCGCPSKTVNGS-G-GGATLLKDPELIYQGAKAMREAVPAHLPVTVKVRLGW-DSGERKFEIAD 155 (312)
T ss_pred HHHHHHHHcCCCEEEEeCCCCchHHhcC-C-CchHhhcCHHHHHHHHHHHHHhcCCCcceEEEEECCC-CCchHHHHHHH
Confidence 34557778899988888654 3344321 0 11 3467778888888887653344433333354 33455789999
Q ss_pred HHHHcCCcEEeee
Q 017200 298 KVRAAGVDVMTFG 310 (375)
Q Consensus 298 ~Lrelgvd~v~i~ 310 (375)
.+.+.|++.+++.
T Consensus 156 ~l~~~Gvd~i~Vh 168 (312)
T PRK10550 156 AVQQAGATELVVH 168 (312)
T ss_pred HHHhcCCCEEEEC
Confidence 9999999999985
No 356
>PLN02495 oxidoreductase, acting on the CH-CH group of donors
Probab=72.61 E-value=36 Score=35.00 Aligned_cols=119 Identities=9% Similarity=0.111 Sum_probs=70.4
Q ss_pred cccHHHHHHHHHHHHHhCCCcEEEeec-CCCC-C-ChHHHHHHHHcCcccccccccchH-HHHHHhcC-CCCCHHHHHHH
Q 017200 189 DQGSGHFAQTVRKLKELKPNMLIEALV-PDFR-G-NNGCVREVAKSGLNVFAHNIETVE-ELQSAVRD-HRANFKQSLDV 263 (375)
Q Consensus 189 d~G~~~~~~lir~Ik~~~p~i~Ie~l~-pd~~-g-~~e~l~~L~~aGldv~~hnlEtv~-rl~~~mr~-r~~s~~~~l~v 263 (375)
|.|.+.|++.++.+++.+|++.|-+++ ..+. . -.+.++.+.++|+|.+..|+-.-+ .-.+.+.. -..+.+..-++
T Consensus 94 ~~g~~~~l~~i~~~k~~~~~~pvIaSi~~~~s~~~~~~~a~~~e~~GaD~iELNiSCPn~~~~r~~g~~~gq~~e~~~~i 173 (385)
T PLN02495 94 DRPFETMLAEFKQLKEEYPDRILIASIMEEYNKDAWEEIIERVEETGVDALEINFSCPHGMPERKMGAAVGQDCDLLEEV 173 (385)
T ss_pred ccCHHHHHHHHHHHHhhCCCCcEEEEccCCCCHHHHHHHHHHHHhcCCCEEEEECCCCCCCCcCccchhhccCHHHHHHH
Confidence 345777888888888777765444443 2120 0 134566777888898887764322 00001100 02345555566
Q ss_pred HHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcCCcEEeeecCC
Q 017200 264 LMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQYM 313 (375)
Q Consensus 264 l~~ak~~~p~Gl~tkt~imvGlGET~ee~~etl~~Lrelgvd~v~i~qYl 313 (375)
++.+++. ++.-+++=++-...++.+..+.+.+.|.|-|.+.+=+
T Consensus 174 ~~~Vk~~------~~iPv~vKLsPn~t~i~~ia~aa~~~Gadgi~liNT~ 217 (385)
T PLN02495 174 CGWINAK------ATVPVWAKMTPNITDITQPARVALKSGCEGVAAINTI 217 (385)
T ss_pred HHHHHHh------hcCceEEEeCCChhhHHHHHHHHHHhCCCEEEEeccc
Confidence 6777663 2233455554556678888999999999988776643
No 357
>PF00809 Pterin_bind: Pterin binding enzyme This Prosite entry is a subset of the Pfam family; InterPro: IPR000489 The ~250-residue pterin-binding domain has been shown to adopt a (beta/alpha)8 barrel fold, which has the overall shape of a distorted cylinder. It has eight alpha-helices stacked around the outside of an inner cylinder of parallel beta-strands. The pterin ring binds at the bottom of the (beta/alpha;)8 barrel in a polar cup-like region that is relatively solvent exposed and fairly negatively charged. The pterin ring is partially buried within the (beta/alpha)8 barrel. The pterin binding residues are highly conserved and include aspartate and asparagine residues located at the C terminus of the beta-strands of the barrel, which are predicted to form hydrogen bonds with the nitrogen and oxygen atoms of the pterin ring [, , ]. Some proteins known to contain a pterin-binding domain are listed below: Prokaryotic and eukaryotic B12-dependent methionine synthase (MetH) (2.1.1.13 from EC), a large, modular protein that catalyzes the transfer of a methyl group from methyltetrahydrofolate (CH3-H4folate) to Hcy to form methionine, using cobalamin as an intermediate methyl carrier. Prokaryotic and eukaryotic dihydropteroate synthase (DHPS) (2.5.1.15 from EC). It catalyzes the condensation of para-aminobenzoic acid (pABA) with 7,8- dihydropterin-pyrophosphate (DHPPP), eliminating pyrophosphate to form 7,8- dihydropteroate which is subsequently converted to tetrahydrofolate. Moorella thermoacetica 5-methyltetrahydrofolate corrinoid/iron sulphur protein methyltransferase (MeTr). It transfers the N5-methyl group from CH3-H4folate to a cob(I)amide centre in another protein, the corrinoid iron sulphur protein. ; GO: 0042558 pteridine-containing compound metabolic process; PDB: 2VP8_B 2BMB_A 2Y5S_B 2Y5J_A 3BOF_B 1Q7Q_B 1Q85_B 1Q7Z_A 1Q7M_A 1Q8A_B ....
Probab=72.48 E-value=17 Score=33.71 Aligned_cols=77 Identities=16% Similarity=0.196 Sum_probs=50.8
Q ss_pred CCcchHHHHHHHHHhcCCcEEEEEeee-CCCCCcc----cHHHHHHHHHHHHHhCCCcEEEeecCCCCCChHHHHHHHHc
Q 017200 157 PDPDEPTNVAEAIASWGLDYVVITSVD-RDDLADQ----GSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKS 231 (375)
Q Consensus 157 ld~eEi~~~a~al~~~G~~eIvLTsgd-r~dl~d~----G~~~~~~lir~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~a 231 (375)
.+.++.++.|++..+.|.+.|-|=++- ++..... -.+++..+|+.+.+.++++.|.+=+. +.+.++...++
T Consensus 16 ~~~~~a~~~a~~~~~~GAdiIDIg~~st~p~~~~v~~~eE~~rl~~~l~~i~~~~~~~plSIDT~----~~~v~~~aL~~ 91 (210)
T PF00809_consen 16 FSEDEAVKRAREQVEAGADIIDIGAESTRPGATPVSEEEEMERLVPVLQAIREENPDVPLSIDTF----NPEVAEAALKA 91 (210)
T ss_dssp HHHHHHHHHHHHHHHTT-SEEEEESSTSSTTSSSSHHHHHHHHHHHHHHHHHHHHTTSEEEEEES----SHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhcCCEEEecccccCCCCCcCCHHHHHHHHHHHHHHHhccCCCeEEEEECC----CHHHHHHHHHc
Confidence 566788889999999999999987763 4433211 24577788888876445666554332 45667666666
Q ss_pred Cccccc
Q 017200 232 GLNVFA 237 (375)
Q Consensus 232 Gldv~~ 237 (375)
|.+.++
T Consensus 92 g~~~in 97 (210)
T PF00809_consen 92 GADIIN 97 (210)
T ss_dssp TSSEEE
T ss_pred CcceEE
Confidence 777654
No 358
>PLN02591 tryptophan synthase
Probab=72.30 E-value=12 Score=36.08 Aligned_cols=16 Identities=38% Similarity=0.679 Sum_probs=9.8
Q ss_pred HHHHHHH-Hhhhhhhcc
Q 017200 333 RYRALGM-EMGFRYVAS 348 (375)
Q Consensus 333 ~l~~~a~-~~gf~~~~s 348 (375)
+++.++. +-||.|+.|
T Consensus 146 ri~~ia~~~~gFIY~Vs 162 (250)
T PLN02591 146 RMKAIAEASEGFVYLVS 162 (250)
T ss_pred HHHHHHHhCCCcEEEee
Confidence 4444443 579999865
No 359
>PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=72.01 E-value=81 Score=31.05 Aligned_cols=166 Identities=13% Similarity=0.117 Sum_probs=97.4
Q ss_pred CCcchHHHHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCCCcEEEeecCCCCCChHHHHHHHHcCcccc
Q 017200 157 PDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVF 236 (375)
Q Consensus 157 ld~eEi~~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGldv~ 236 (375)
.+.+.+...++++.+.+.--|+-++...-.+ .|.+.+..+++.+.+.. .+.|. +.-|...+.|.+..-.++|-+++
T Consensus 26 ~n~e~~~avi~AAee~~sPvIiq~~~~~~~~--~g~~~~~~~~~~~A~~~-~VPV~-lHLDHg~~~e~i~~Ai~~GftSV 101 (284)
T PRK09195 26 HNLETMQVVVETAAELHSPVIIAGTPGTFSY--AGTEYLLAIVSAAAKQY-HHPLA-LHLDHHEKFDDIAQKVRSGVRSV 101 (284)
T ss_pred CCHHHHHHHHHHHHHhCCCEEEEcChhHHhh--CCHHHHHHHHHHHHHHC-CCCEE-EECCCCCCHHHHHHHHHcCCCEE
Confidence 3567777888888888877776666543333 34677888888887765 34433 55576667899999999996654
Q ss_pred cccccchH-HHHHHhcCCCCCHHHHHHHHHHHHHhCCCCceEEE--eEEEecCCCH----------HHHHHHHHHHHHcC
Q 017200 237 AHNIETVE-ELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKT--SIMLGCGETP----------DQVVSTMEKVRAAG 303 (375)
Q Consensus 237 ~hnlEtv~-rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~tkt--~imvGlGET~----------ee~~etl~~Lrelg 303 (375)
.++.+. .+ ..+.+...++.+.||. .|+.+-. |-|=|- |.. -+..+..+++++.|
T Consensus 102 --M~DgS~l~~-------eeNi~~T~~vv~~Ah~---~gv~VEaElG~vgg~-e~~~~~~~~~~~~T~peea~~Fv~~Tg 168 (284)
T PRK09195 102 --MIDGSHLPF-------AQNISLVKEVVDFCHR---FDVSVEAELGRLGGQ-EDDLQVDEADALYTDPAQAREFVEATG 168 (284)
T ss_pred --EeCCCCCCH-------HHHHHHHHHHHHHHHH---cCCEEEEEEecccCc-ccCcccccccccCCCHHHHHHHHHHHC
Confidence 344332 11 1233455677888887 3554433 333221 111 14557888999999
Q ss_pred CcEEeeecCCCCCCCCCCccccCCHHHHHHHHHHHHHhhhh
Q 017200 304 VDVMTFGQYMRPSKRHMPVSEYITPEAFERYRALGMEMGFR 344 (375)
Q Consensus 304 vd~v~i~qYl~P~~~~~~v~~~v~pe~~~~l~~~a~~~gf~ 344 (375)
+|.+-+. + ++-|-.-.. ...=.|++|+++....+.-
T Consensus 169 vD~LAva-i---Gt~HG~y~~-~p~Ld~~~L~~I~~~~~vP 204 (284)
T PRK09195 169 IDSLAVA-I---GTAHGMYKG-EPKLDFDRLENIRQWVNIP 204 (284)
T ss_pred cCEEeec-c---CccccccCC-CCcCCHHHHHHHHHHhCCC
Confidence 9986653 1 122211110 0011366777777666653
No 360
>TIGR02311 HpaI 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents the aldolase which performs the final step unique to the 4-hydroxyphenylacetic acid catabolism pathway in which 2,4-dihydroxyhept-2-ene-1,7-dioic acid is split into pyruvate and succinate-semialdehyde. The gene for enzyme is generally found adjacent to other genes for this pathway organized into an operon.
Probab=71.92 E-value=76 Score=30.38 Aligned_cols=133 Identities=17% Similarity=0.171 Sum_probs=70.6
Q ss_pred HHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCCCcEEEeecCCCCCChHHHHHHHHcCcccccc-cccch
Q 017200 165 VAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAH-NIETV 243 (375)
Q Consensus 165 ~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGldv~~h-nlEtv 243 (375)
.++.+...|++.|+|=.-+... | ...+..+++.++...-...|++ |.. +...+..+.++|++.+-. .+++.
T Consensus 25 ~~e~~~~~g~D~v~iDlEH~~~--~--~~~~~~~~~a~~~~g~~~~VRv--~~~--~~~~i~~~Ld~Ga~gIivP~v~s~ 96 (249)
T TIGR02311 25 AAEICAGAGFDWLLIDGEHAPN--D--VRTILSQLQALAPYPSSPVVRP--AIG--DPVLIKQLLDIGAQTLLVPMIETA 96 (249)
T ss_pred HHHHHHhcCCCEEEEeccCCCC--C--HHHHHHHHHHHHhcCCCcEEEC--CCC--CHHHHHHHhCCCCCEEEecCcCCH
Confidence 4666778999999987665441 2 5556667776644222234443 322 556899999999985422 25555
Q ss_pred HHHH---HHhc--C---CCCC-----HHHHHHHHHHHHHhCCCCceEEEeEEEe-cCCCHHHHHHHHHHHHHcCCcEEee
Q 017200 244 EELQ---SAVR--D---HRAN-----FKQSLDVLMMAKDYVPAGTLTKTSIMLG-CGETPDQVVSTMEKVRAAGVDVMTF 309 (375)
Q Consensus 244 ~rl~---~~mr--~---r~~s-----~~~~l~vl~~ak~~~p~Gl~tkt~imvG-lGET~ee~~etl~~Lrelgvd~v~i 309 (375)
+++. +.++ | |+.. ...|-..-+.+... ...+++. +-||.+-+...-+-+.--++|.+.|
T Consensus 97 e~a~~~v~~~~y~P~G~Rg~~~~~~~~~~~~~~~~y~~~~-------n~~~~vi~~IEt~~av~n~~eI~a~~gvd~l~~ 169 (249)
T TIGR02311 97 EQAEAAVAATRYPPMGIRGVGSALARASRWNRIPDYLQQA-------DEEICVLLQVETREALDNLEEIAAVEGVDGVFI 169 (249)
T ss_pred HHHHHHHHHcCCCCCCcCCCCCccchhhccCChHHHHHHh-------hhceEEEEEecCHHHHHHHHHHHCCCCCcEEEE
Confidence 4333 2222 1 1101 00000011111111 0111121 2499988776655555457999999
Q ss_pred ecC
Q 017200 310 GQY 312 (375)
Q Consensus 310 ~qY 312 (375)
|.+
T Consensus 170 G~~ 172 (249)
T TIGR02311 170 GPA 172 (249)
T ss_pred CHH
Confidence 854
No 361
>PRK07535 methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase; Validated
Probab=71.89 E-value=99 Score=29.89 Aligned_cols=74 Identities=15% Similarity=0.115 Sum_probs=49.1
Q ss_pred CCcchHHHHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCCCcEEEeecCCCCCChHHHHHHHHc--Ccc
Q 017200 157 PDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKS--GLN 234 (375)
Q Consensus 157 ld~eEi~~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~a--Gld 234 (375)
.|++.+++.|++..+.|.+.|-|=++... +...+.+..+|+.|++.. ++.|.+=+ + +.+.++.-.+. |.+
T Consensus 22 ~d~~~i~~~A~~~~~~GAdiIDVg~~~~~---~eE~~r~~~~v~~l~~~~-~~plsIDT--~--~~~v~eaaL~~~~G~~ 93 (261)
T PRK07535 22 KDAAFIQKLALKQAEAGADYLDVNAGTAV---EEEPETMEWLVETVQEVV-DVPLCIDS--P--NPAAIEAGLKVAKGPP 93 (261)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECCCCCc---hhHHHHHHHHHHHHHHhC-CCCEEEeC--C--CHHHHHHHHHhCCCCC
Confidence 68899999999999999999988776432 112556778888887654 23332211 1 45666666655 766
Q ss_pred cccc
Q 017200 235 VFAH 238 (375)
Q Consensus 235 v~~h 238 (375)
.++-
T Consensus 94 iINs 97 (261)
T PRK07535 94 LINS 97 (261)
T ss_pred EEEe
Confidence 6543
No 362
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=71.67 E-value=20 Score=34.07 Aligned_cols=73 Identities=10% Similarity=0.069 Sum_probs=48.9
Q ss_pred chHHHHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCCCcEEEeecCCCCCChHHHHHHHHcCcccccc
Q 017200 160 DEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAH 238 (375)
Q Consensus 160 eEi~~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGldv~~h 238 (375)
-++.+.++.+.++|+.++++|.++++--.. |.+ .++++.+.+.. ++.|.+.-+- ++.+.+..+.+.|++.+-.
T Consensus 148 ~~~~~~~~~~~~~g~~~ii~tdi~~dGt~~-G~~--~~li~~l~~~~-~ipvi~~GGi--~s~edi~~l~~~G~~~viv 220 (234)
T PRK13587 148 LNLFSFVRQLSDIPLGGIIYTDIAKDGKMS-GPN--FELTGQLVKAT-TIPVIASGGI--RHQQDIQRLASLNVHAAII 220 (234)
T ss_pred CCHHHHHHHHHHcCCCEEEEecccCcCCCC-ccC--HHHHHHHHHhC-CCCEEEeCCC--CCHHHHHHHHHcCCCEEEE
Confidence 356777888889999999999998764321 222 45667776543 3444433222 2788899999999886543
No 363
>TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family. This model describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4.
Probab=71.47 E-value=1.1e+02 Score=30.15 Aligned_cols=167 Identities=16% Similarity=0.128 Sum_probs=98.0
Q ss_pred CCcchHHHHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCCCcEEEeecCCCCCChHHHHHHHHcCcccc
Q 017200 157 PDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVF 236 (375)
Q Consensus 157 ld~eEi~~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGldv~ 236 (375)
.+.+.+...++++.+.+.-=|+-.+...-.+ .|...+..+++.+.+.. .+.|. +.-|...+.|.+..-.++|.+++
T Consensus 24 ~n~e~~~avi~AAee~~sPvIlq~s~~~~~~--~~~~~~~~~~~~~a~~~-~VPVa-lHLDHg~~~e~i~~ai~~GFtSV 99 (282)
T TIGR01858 24 HNLETIQAVVETAAEMRSPVILAGTPGTFKH--AGTEYIVALCSAASTTY-NMPLA-LHLDHHESLDDIRQKVHAGVRSA 99 (282)
T ss_pred CCHHHHHHHHHHHHHhCCCEEEEeCccHHhh--CCHHHHHHHHHHHHHHC-CCCEE-EECCCCCCHHHHHHHHHcCCCEE
Confidence 3567788888888888887666665543233 23677888888887655 24333 55576667899999999996654
Q ss_pred cccccchHHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCceEEE--eEEEecCCCH------H----HHHHHHHHHHHcCC
Q 017200 237 AHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKT--SIMLGCGETP------D----QVVSTMEKVRAAGV 304 (375)
Q Consensus 237 ~hnlEtv~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~tkt--~imvGlGET~------e----e~~etl~~Lrelgv 304 (375)
.++.+.--| .-+.+...++.+.||. .|+.+-. |-|=|- |.. + +-.+..+++++.|+
T Consensus 100 --M~DgS~lp~------eeNi~~T~~vv~~Ah~---~gv~VEaElG~vgg~-e~~~~~~~~~~~~T~peea~~Fv~~Tgv 167 (282)
T TIGR01858 100 --MIDGSHFPF------AQNVKLVKEVVDFCHR---QDCSVEAELGRLGGV-EDDLSVDEEDALYTDPQEAKEFVEATGV 167 (282)
T ss_pred --eecCCCCCH------HHHHHHHHHHHHHHHH---cCCeEEEEEEecCCc-cCCCccccchhccCCHHHHHHHHHHHCc
Confidence 344442111 1234555678888888 3655433 222221 111 1 23677889999999
Q ss_pred cEEeeecCCCCCCCCCCccccCCHHHHHHHHHHHHHhhhh
Q 017200 305 DVMTFGQYMRPSKRHMPVSEYITPEAFERYRALGMEMGFR 344 (375)
Q Consensus 305 d~v~i~qYl~P~~~~~~v~~~v~pe~~~~l~~~a~~~gf~ 344 (375)
|.+-+. + ++-|-.-.. ...=.|++|+++....+.-
T Consensus 168 D~LAva-i---Gt~HG~yk~-~p~Ldf~~L~~I~~~~~iP 202 (282)
T TIGR01858 168 DSLAVA-I---GTAHGLYKK-TPKLDFDRLAEIREVVDVP 202 (282)
T ss_pred CEEecc-c---CccccCcCC-CCccCHHHHHHHHHHhCCC
Confidence 987663 1 122211111 0011477777777766653
No 364
>PRK06512 thiamine-phosphate pyrophosphorylase; Provisional
Probab=71.43 E-value=67 Score=30.24 Aligned_cols=114 Identities=15% Similarity=0.148 Sum_probs=65.7
Q ss_pred cchHHHHHHHHHhcC-CcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCCCcEEEeecCCCCCChHHHHHHHHcCccccc
Q 017200 159 PDEPTNVAEAIASWG-LDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFA 237 (375)
Q Consensus 159 ~eEi~~~a~al~~~G-~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGldv~~ 237 (375)
.+++++.++++.+.| ++-|.|= ..++. ...+.++.++|++......+.+++-| .++.....|.|.+.
T Consensus 25 ~~~~~~~l~~al~~G~v~~vQlR---~K~l~---~~~~~~~a~~l~~l~~~~gv~liINd------~~dlA~~~~adGVH 92 (221)
T PRK06512 25 GAELAKLLRAALQGGDVASVILP---QYGLD---EATFQKQAEKLVPVIQEAGAAALIAG------DSRIAGRVKADGLH 92 (221)
T ss_pred cccHHHHHHHHHcCCCccEEEEe---CCCCC---HHHHHHHHHHHHHHHHHhCCEEEEeC------HHHHHHHhCCCEEE
Confidence 356788888888999 6877654 23333 34566666666654321123334422 35556667777665
Q ss_pred ccccchHHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEec--CCCHHHHHHHHHHHHHcCCcEEeeecCC
Q 017200 238 HNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGC--GETPDQVVSTMEKVRAAGVDVMTFGQYM 313 (375)
Q Consensus 238 hnlEtv~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~tkt~imvGl--GET~ee~~etl~~Lrelgvd~v~i~qYl 313 (375)
.+.+-. -+..+++.. ..+.++|. ..+.++..+ ..+.|.|++.||+++
T Consensus 93 Lg~~d~-------------------~~~~~r~~~------~~~~iiG~s~~~s~~~a~~----A~~~gaDYv~~Gpv~ 141 (221)
T PRK06512 93 IEGNLA-------------------ALAEAIEKH------APKMIVGFGNLRDRHGAME----IGELRPDYLFFGKLG 141 (221)
T ss_pred ECcccc-------------------CHHHHHHhc------CCCCEEEecCCCCHHHHHH----hhhcCCCEEEECCCC
Confidence 432210 022333321 14467887 456666544 457899999999886
No 365
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=71.41 E-value=17 Score=35.64 Aligned_cols=80 Identities=16% Similarity=0.231 Sum_probs=53.5
Q ss_pred CCcchHHHHHHHHHhcCCcEEEEEeeeCCCCCc------ccHHHHHHHHHHHHHhCCCcEEEeecCCCCCChHHHHHHHH
Q 017200 157 PDPDEPTNVAEAIASWGLDYVVITSVDRDDLAD------QGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAK 230 (375)
Q Consensus 157 ld~eEi~~~a~al~~~G~~eIvLTsgdr~dl~d------~G~~~~~~lir~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~ 230 (375)
++.+|.++.++.+.+.|+++|.++++....... .+.....+.++.|++.. ++.|- ..+.+. +.+.++.+.+
T Consensus 225 ~~~~e~~~la~~l~~~G~d~i~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~-~iPVi-~~Ggi~-t~~~a~~~l~ 301 (327)
T cd02803 225 LTLEEAIEIAKALEEAGVDALHVSGGSYESPPPIIPPPYVPEGYFLELAEKIKKAV-KIPVI-AVGGIR-DPEVAEEILA 301 (327)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEeCCCCCcccccccCCCCCCcchhHHHHHHHHHHC-CCCEE-EeCCCC-CHHHHHHHHH
Confidence 567899999999999999999999886432110 01234567778888765 23332 223332 5777777777
Q ss_pred c-Cccccccc
Q 017200 231 S-GLNVFAHN 239 (375)
Q Consensus 231 a-Gldv~~hn 239 (375)
. |+|.+..+
T Consensus 302 ~g~aD~V~ig 311 (327)
T cd02803 302 EGKADLVALG 311 (327)
T ss_pred CCCCCeeeec
Confidence 7 78887764
No 366
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=71.37 E-value=67 Score=32.38 Aligned_cols=89 Identities=17% Similarity=0.225 Sum_probs=53.1
Q ss_pred hHHHHHHHHcCcc--cccccccchHHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEec--CCCHHHHHHHHH
Q 017200 222 NGCVREVAKSGLN--VFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGC--GETPDQVVSTME 297 (375)
Q Consensus 222 ~e~l~~L~~aGld--v~~hnlEtv~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~tkt~imvGl--GET~ee~~etl~ 297 (375)
.+.|..|+++|+. .+..+=|+..-++--.. +..++++....|..+.+...+ ..-.+-||+-+ |...+.+.--++
T Consensus 113 ~~vl~~l~~~G~~pd~VQVGNEin~Gmlwp~g-~~~~~~~~a~ll~ag~~AVr~-~~p~~kV~lH~~~~~~~~~~~~~f~ 190 (332)
T PF07745_consen 113 KDVLQALKAAGVTPDMVQVGNEINNGMLWPDG-KPSNWDNLAKLLNAGIKAVRE-VDPNIKVMLHLANGGDNDLYRWFFD 190 (332)
T ss_dssp HHHHHHHHHTT--ESEEEESSSGGGESTBTTT-CTT-HHHHHHHHHHHHHHHHT-HSSTSEEEEEES-TTSHHHHHHHHH
T ss_pred HHHHHHHHHCCCCccEEEeCccccccccCcCC-CccCHHHHHHHHHHHHHHHHh-cCCCCcEEEEECCCCchHHHHHHHH
Confidence 5677889988864 45555455443332222 357788888887544332212 22345667777 777777777888
Q ss_pred HHHHcC--CcEEeeecC
Q 017200 298 KVRAAG--VDVMTFGQY 312 (375)
Q Consensus 298 ~Lrelg--vd~v~i~qY 312 (375)
.|++.| +|+|.+.-|
T Consensus 191 ~l~~~g~d~DviGlSyY 207 (332)
T PF07745_consen 191 NLKAAGVDFDVIGLSYY 207 (332)
T ss_dssp HHHHTTGG-SEEEEEE-
T ss_pred HHHhcCCCcceEEEecC
Confidence 888866 578999655
No 367
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=71.20 E-value=38 Score=32.17 Aligned_cols=18 Identities=33% Similarity=0.473 Sum_probs=12.2
Q ss_pred HHHHHHHHH-Hhhhhhhcc
Q 017200 331 FERYRALGM-EMGFRYVAS 348 (375)
Q Consensus 331 ~~~l~~~a~-~~gf~~~~s 348 (375)
.++++.++. +.||.|++|
T Consensus 142 ~~~i~~i~~~~~~~vy~~s 160 (242)
T cd04724 142 DERIKKIAELASGFIYYVS 160 (242)
T ss_pred HHHHHHHHhhCCCCEEEEe
Confidence 445555555 789988865
No 368
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=71.19 E-value=80 Score=30.85 Aligned_cols=101 Identities=9% Similarity=0.093 Sum_probs=58.6
Q ss_pred CCHHHHHHHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcCCcEEeeecCCCC------CC-C-----C--C
Q 017200 255 ANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQYMRP------SK-R-----H--M 320 (375)
Q Consensus 255 ~s~~~~l~vl~~ak~~~p~Gl~tkt~imvGlGET~ee~~etl~~Lrelgvd~v~i~qYl~P------~~-~-----~--~ 320 (375)
.+.+...++++.+++....=+.+|.. -..+++.+..+.+.+.|+|.|++.+=+.. .. + | .
T Consensus 151 ~~~~~~~~iv~~v~~~~~~Pv~vKl~------~~~~~~~~~a~~~~~~Gadgi~~~Nt~~~~~~id~~~~~~~~~~~~~~ 224 (299)
T cd02940 151 QDPELVEEICRWVREAVKIPVIAKLT------PNITDIREIARAAKEGGADGVSAINTVNSLMGVDLDGTPPAPGVEGKT 224 (299)
T ss_pred cCHHHHHHHHHHHHHhcCCCeEEECC------CCchhHHHHHHHHHHcCCCEEEEecccccccccccccCCccccccCCC
Confidence 34566777777777642111334432 23347888888899999999887543211 00 0 0 0
Q ss_pred Cccc----cCCHHHHHHHHHHHHHh--hhhhhccchhhhhhcchhHHH
Q 017200 321 PVSE----YITPEAFERYRALGMEM--GFRYVASGPMVRSSYKVVGWC 362 (375)
Q Consensus 321 ~v~~----~v~pe~~~~l~~~a~~~--gf~~~~sgp~vrssy~a~~~~ 362 (375)
.... .+.|-..+.+.++.+.. .+..+++| -|+|.-.|-+++
T Consensus 225 ~~gg~sG~a~~p~~l~~v~~~~~~~~~~ipIig~G-GI~~~~da~~~l 271 (299)
T cd02940 225 TYGGYSGPAVKPIALRAVSQIARAPEPGLPISGIG-GIESWEDAAEFL 271 (299)
T ss_pred CcCcccCCCcchHHHHHHHHHHHhcCCCCcEEEEC-CCCCHHHHHHHH
Confidence 0011 13455578888888877 67777888 666655555444
No 369
>PRK09432 metF 5,10-methylenetetrahydrofolate reductase; Provisional
Probab=70.99 E-value=36 Score=33.59 Aligned_cols=49 Identities=20% Similarity=0.154 Sum_probs=35.4
Q ss_pred CCcchHHHHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHh
Q 017200 157 PDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKEL 205 (375)
Q Consensus 157 ld~eEi~~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~ 205 (375)
.+..++...+..+.+.|++.|+..+||.+...+....+-.++|+.|++.
T Consensus 94 ~n~~~l~~~L~~~~~~GI~niLaLrGD~p~~~~~~~~~a~dLv~li~~~ 142 (296)
T PRK09432 94 ATPDELRTIAKDYWNNGIRHIVALRGDLPPGSGKPEMYASDLVTLLKSV 142 (296)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEeCCCCCCCCCCCCcCHHHHHHHHHHh
Confidence 4677888888899999999999999986543332223345777777654
No 370
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=70.90 E-value=36 Score=33.90 Aligned_cols=89 Identities=15% Similarity=0.233 Sum_probs=52.0
Q ss_pred HHHHHHHHcCccccccccc-c--hHHHHH-HhcCC----CCCHHHH----HHHHHHHHHhCCCCceEEEeEE----EecC
Q 017200 223 GCVREVAKSGLNVFAHNIE-T--VEELQS-AVRDH----RANFKQS----LDVLMMAKDYVPAGTLTKTSIM----LGCG 286 (375)
Q Consensus 223 e~l~~L~~aGldv~~hnlE-t--v~rl~~-~mr~r----~~s~~~~----l~vl~~ak~~~p~Gl~tkt~im----vGlG 286 (375)
+..+..+++|.|.+..+.- . ....+. ..+.| +.+.+.+ +++++.+++..+.++.+...+= .--|
T Consensus 153 ~aA~ra~~aGfDgVeih~a~gyLl~qFlsp~~N~R~D~yGGslenR~rf~~EiI~aIR~avG~d~~v~vris~~~~~~~g 232 (338)
T cd04733 153 HAARLAQEAGFDGVQIHAAHGYLLSQFLSPLTNKRTDEYGGSLENRARLLLEIYDAIRAAVGPGFPVGIKLNSADFQRGG 232 (338)
T ss_pred HHHHHHHHcCCCEEEEchhhhhHHHHhcCCcCCCCCccCCCCHHHHHHHHHHHHHHHHHHcCCCCeEEEEEcHHHcCCCC
Confidence 3456777888887754311 0 011111 11111 2344433 5688888887654444433321 1125
Q ss_pred CCHHHHHHHHHHHHHcCCcEEeeec
Q 017200 287 ETPDQVVSTMEKVRAAGVDVMTFGQ 311 (375)
Q Consensus 287 ET~ee~~etl~~Lrelgvd~v~i~q 311 (375)
-|.+|.++.++.|.+.|+|++.+..
T Consensus 233 ~~~eea~~ia~~Le~~Gvd~iev~~ 257 (338)
T cd04733 233 FTEEDALEVVEALEEAGVDLVELSG 257 (338)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEecC
Confidence 6899999999999999999988753
No 371
>TIGR01235 pyruv_carbox pyruvate carboxylase. This enzyme plays a role in gluconeogensis but not glycolysis.
Probab=70.88 E-value=60 Score=38.07 Aligned_cols=137 Identities=14% Similarity=0.132 Sum_probs=80.9
Q ss_pred CCcchHHHHHHHHHhc--CCcEEEEEeeeCCCCC--cccHHHHHHHHHHHHHhCCCcEEEeecCC--CCC----C----h
Q 017200 157 PDPDEPTNVAEAIASW--GLDYVVITSVDRDDLA--DQGSGHFAQTVRKLKELKPNMLIEALVPD--FRG----N----N 222 (375)
Q Consensus 157 ld~eEi~~~a~al~~~--G~~eIvLTsgdr~dl~--d~G~~~~~~lir~Ik~~~p~i~Ie~l~pd--~~g----~----~ 222 (375)
+..++++..|+++.+. |+-.+-..||..-|.- -.+-+ =.+-++.+++..|++.+..|.-. ..| . .
T Consensus 550 ~rt~d~~~ia~~~~~~~~g~~s~E~wggAtfd~~~rfl~Ed-Pwerl~~~r~~~pn~~~qml~Rg~n~vgy~~ypd~vv~ 628 (1143)
T TIGR01235 550 VRTHDLAKIAPTTSHALPNLFSLECWGGATFDVAMRFLHED-PWERLEDLRKGVPNILFQMLLRGANGVGYTNYPDNVVK 628 (1143)
T ss_pred CCHHHHHHHHHHHHHhcCCceEEEeeCCccHHHHHHHhcCC-HHHHHHHHHHhCCCCceeeeeccccccCccCCCHHHHH
Confidence 6688999999999984 9999999998543211 00001 13567889998999988876531 111 1 3
Q ss_pred HHHHHHHHcCcccccccccchHHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEe------c--CCCHHHHHH
Q 017200 223 GCVREVAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLG------C--GETPDQVVS 294 (375)
Q Consensus 223 e~l~~L~~aGldv~~hnlEtv~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~tkt~imvG------l--GET~ee~~e 294 (375)
..++..++.|+|++-. |..++ ..+.-...++.+++ .|..+...|.+= . --|.+-+++
T Consensus 629 ~f~~~~~~~Gidifri--------fD~lN----~~~n~~~~~~~~~~---~g~~~~~~i~yt~~~~d~~~~~~~l~y~~~ 693 (1143)
T TIGR01235 629 YFVKQAAQGGIDIFRV--------FDSLN----WVENMRVGMDAVAE---AGKVVEAAICYTGDILDPARPKYDLKYYTN 693 (1143)
T ss_pred HHHHHHHHcCCCEEEE--------CccCc----CHHHHHHHHHHHHH---cCCEEEEEEEEeccCCCcCCCCCCHHHHHH
Confidence 4456667888887754 22222 13333444555555 344444444442 1 124555666
Q ss_pred HHHHHHHcCCcEEee
Q 017200 295 TMEKVRAAGVDVMTF 309 (375)
Q Consensus 295 tl~~Lrelgvd~v~i 309 (375)
..+.|.+.|++.|.|
T Consensus 694 ~ak~l~~~Gad~I~i 708 (1143)
T TIGR01235 694 LAVELEKAGAHILGI 708 (1143)
T ss_pred HHHHHHHcCCCEEEE
Confidence 666666666666655
No 372
>cd00423 Pterin_binding Pterin binding enzymes. This family includes dihydropteroate synthase (DHPS) and cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). DHPS, a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS. Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=70.71 E-value=1e+02 Score=29.50 Aligned_cols=77 Identities=17% Similarity=0.191 Sum_probs=50.0
Q ss_pred CCCcchHHHHHHHHHhcCCcEEEEEeee-CCCC----CcccHHHHHHHHHHHHHhCCCcEEEeecCCCCCChHHHHHHHH
Q 017200 156 PPDPDEPTNVAEAIASWGLDYVVITSVD-RDDL----ADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAK 230 (375)
Q Consensus 156 ~ld~eEi~~~a~al~~~G~~eIvLTsgd-r~dl----~d~G~~~~~~lir~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~ 230 (375)
..+++++++.|+++.+.|.+.|-|=++. +++. ++...+.+..+|+.|++.. ++.|.+=+ + +.+.++.-.+
T Consensus 20 ~~~~~~~~~~a~~~~~~GAdiIDvG~~st~p~~~~~~~~~E~~rl~~~v~~l~~~~-~~piSIDT--~--~~~v~~aaL~ 94 (258)
T cd00423 20 FLSLDKALEHARRMVEEGADIIDIGGESTRPGAEPVSVEEELERVIPVLRALAGEP-DVPISVDT--F--NAEVAEAALK 94 (258)
T ss_pred cCCHHHHHHHHHHHHHCCCCEEEECCCcCCCCCCcCCHHHHHHHHHHHHHHHHhcC-CCeEEEeC--C--cHHHHHHHHH
Confidence 3689999999999999999999887663 4442 1122456777888887543 33332211 2 4566666666
Q ss_pred cCccccc
Q 017200 231 SGLNVFA 237 (375)
Q Consensus 231 aGldv~~ 237 (375)
.|.+.++
T Consensus 95 ~g~~iIN 101 (258)
T cd00423 95 AGADIIN 101 (258)
T ss_pred hCCCEEE
Confidence 6666554
No 373
>TIGR03239 GarL 2-dehydro-3-deoxyglucarate aldolase. In E. coli this enzyme (GarL, ) 2-dehydro-3-deoxyglucarate aldolase acts in the catabolism of several sugars including D-galactarate, D-glucarate and L-idarate. In fact, 5-dehydro-4-deoxy-D-glucarate aldolase is a synonym for this enzyme as it is unclear in the literature whether the enzyme acts on only one of these or, as seems likely, has no preference. (Despite the apparent large difference in substrate stucture indicated by their names, 2-DH-3DO- and 5-DH-4DO-glucarate differ only by the chirality of most central hydroxyl-bearing carbon and is alternately named 2-DH-3DO-galactarate.) The reported product of D-galactarate dehydratase (4.2.1.42) is the 5DH-4DO-glucarate isomer and this enzyme is found proximal to the aldolase in many genomes (GenProp0714) where no epimerase is known. Similarly, the product of D-glucarate dehydratase (4.2.1.40) is again the 5-DH-4DO isomer, so the provenance of the 2-DH-3DO-glucarate isomer for which
Probab=70.48 E-value=92 Score=29.89 Aligned_cols=132 Identities=19% Similarity=0.221 Sum_probs=74.3
Q ss_pred HHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCCCcEEEeecCCCCCChHHHHHHHHcCcccc-cccccc
Q 017200 164 NVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVF-AHNIET 242 (375)
Q Consensus 164 ~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGldv~-~hnlEt 242 (375)
..+|.+...|+++|+|=.-+.+ + | .+.+.++++.+...--...|++ |.- +...++++.|+|.+.+ -=++++
T Consensus 24 ~~~e~~a~~G~D~v~iD~EHg~-~-~--~~~~~~~~~a~~~~g~~~~VRv--p~~--~~~~i~r~LD~Ga~gIivP~v~t 95 (249)
T TIGR03239 24 ITTEVLGLAGFDWLLLDGEHAP-N-D--VLTFIPQLMALKGSASAPVVRP--PWN--EPVIIKRLLDIGFYNFLIPFVES 95 (249)
T ss_pred HHHHHHHhcCCCEEEEecccCC-C-C--HHHHHHHHHHHhhcCCCcEEEC--CCC--CHHHHHHHhcCCCCEEEecCcCC
Confidence 3466778899999998776543 1 2 4567778887765422234443 332 6788999999999843 223677
Q ss_pred hHHHHHHh---c--C---CCC-------CHHHHHHHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcCCcEE
Q 017200 243 VEELQSAV---R--D---HRA-------NFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVM 307 (375)
Q Consensus 243 v~rl~~~m---r--~---r~~-------s~~~~l~vl~~ak~~~p~Gl~tkt~imvGlGET~ee~~etl~~Lrelgvd~v 307 (375)
.++..+.+ + | |+. .|...-+-++.+-+ . +..-.| -||.+-+.+.=+-+.--++|.+
T Consensus 96 aeea~~~v~a~kypP~G~Rg~~~~~r~~~y~~~~~y~~~~n~---~---~~vi~~---IEt~~av~n~~eI~av~gvd~l 166 (249)
T TIGR03239 96 AEEAERAVAATRYPPEGIRGVSVSHRSNRYGTVPDYFATIND---N---ITVLVQ---IESQKGVDNVDEIAAVDGVDGI 166 (249)
T ss_pred HHHHHHHHHHcCCCCCCcCCCCcchhhhccCChHHHHHHhcc---c---cEEEEE---ECCHHHHHhHHHHhCCCCCCEE
Confidence 66544433 2 1 111 11111112222211 1 222222 4999887655554544469999
Q ss_pred eeecC
Q 017200 308 TFGQY 312 (375)
Q Consensus 308 ~i~qY 312 (375)
.||.+
T Consensus 167 ~iG~~ 171 (249)
T TIGR03239 167 FVGPS 171 (249)
T ss_pred EEChH
Confidence 99854
No 374
>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=70.47 E-value=15 Score=36.84 Aligned_cols=93 Identities=16% Similarity=0.192 Sum_probs=55.0
Q ss_pred CCcchHHHHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhC-CCcEEEeecCCCCCChHHHHHHHHcCccc
Q 017200 157 PDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELK-PNMLIEALVPDFRGNNGCVREVAKSGLNV 235 (375)
Q Consensus 157 ld~eEi~~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~-p~i~Ie~l~pd~~g~~e~l~~L~~aGldv 235 (375)
++.+|.++.++.+.+.|+++|.++++..............+.++.|++.. +++.|- ..+.+. +.+..+.+.+.|+|.
T Consensus 232 ~~~ee~~~i~~~L~~~GvD~I~Vs~g~~~~~~~~~~~~~~~~~~~ik~~~~~~iPVi-~~Ggi~-t~e~ae~~l~~gaD~ 309 (353)
T cd04735 232 IRMEDTLALVDKLADKGLDYLHISLWDFDRKSRRGRDDNQTIMELVKERIAGRLPLI-AVGSIN-TPDDALEALETGADL 309 (353)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEeccCccccccccCCcchHHHHHHHHHHhCCCCCEE-EECCCC-CHHHHHHHHHcCCCh
Confidence 67789999999999999999999987542211100001233445555543 233332 234443 677788887779998
Q ss_pred cccccc--chHHHHHHhc
Q 017200 236 FAHNIE--TVEELQSAVR 251 (375)
Q Consensus 236 ~~hnlE--tv~rl~~~mr 251 (375)
+..+=- ..+.+..++.
T Consensus 310 V~~gR~liadPdl~~k~~ 327 (353)
T cd04735 310 VAIGRGLLVDPDWVEKIK 327 (353)
T ss_pred HHHhHHHHhCccHHHHHH
Confidence 766511 1235555554
No 375
>PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes. Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F ....
Probab=70.40 E-value=21 Score=33.66 Aligned_cols=72 Identities=22% Similarity=0.305 Sum_probs=48.0
Q ss_pred cchHHHHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCCCcEEEeecCCCCCChHHHHHHHHcCcccc
Q 017200 159 PDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVF 236 (375)
Q Consensus 159 ~eEi~~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGldv~ 236 (375)
.-++.+.++.+.++|++++++|.++++--. .|.+ .++++.+.+.. ++.+-+.-+ .++.+.+..+++.|++.+
T Consensus 146 ~~~~~~~~~~~~~~g~~~ii~tdi~~dGt~-~G~d--~~~~~~l~~~~-~~~viasGG--v~~~~Dl~~l~~~G~~gv 217 (229)
T PF00977_consen 146 GIDLEEFAKRLEELGAGEIILTDIDRDGTM-QGPD--LELLKQLAEAV-NIPVIASGG--VRSLEDLRELKKAGIDGV 217 (229)
T ss_dssp EEEHHHHHHHHHHTT-SEEEEEETTTTTTS-SS----HHHHHHHHHHH-SSEEEEESS----SHHHHHHHHHTTECEE
T ss_pred CcCHHHHHHHHHhcCCcEEEEeeccccCCc-CCCC--HHHHHHHHHHc-CCCEEEecC--CCCHHHHHHHHHCCCcEE
Confidence 356788888999999999999999876432 3444 36777777654 344433222 237889999999998654
No 376
>COG0821 gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase [Lipid metabolism]
Probab=70.12 E-value=42 Score=33.93 Aligned_cols=125 Identities=23% Similarity=0.312 Sum_probs=76.4
Q ss_pred CCcchHHHHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCCCcEEEeecCCCCCChHHHHHHHHcCcccc
Q 017200 157 PDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVF 236 (375)
Q Consensus 157 ld~eEi~~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGldv~ 236 (375)
-|.+.-++.+.++.++|.+-|.+|=.+ .. =++.+..|++..+ +. |+.|+.-+...+....+.|+|-+
T Consensus 33 ~Dv~aTv~QI~~L~~aG~dIVRvtv~~---~e------~A~A~~~Ik~~~~-vP---LVaDiHf~~rla~~~~~~g~~k~ 99 (361)
T COG0821 33 ADVEATVAQIKALERAGCDIVRVTVPD---ME------AAEALKEIKQRLN-VP---LVADIHFDYRLALEAAECGVDKV 99 (361)
T ss_pred ccHHHHHHHHHHHHHcCCCEEEEecCC---HH------HHHHHHHHHHhCC-CC---EEEEeeccHHHHHHhhhcCcceE
Confidence 366777788888999999888877332 22 2567777887652 21 34443326677777788887766
Q ss_pred cccccchHHHHHHhcCCCCC-HHHHHHHHHHHHHhCCCCceEEEeEEEec----------CCCHHHHH----HHHHHHHH
Q 017200 237 AHNIETVEELQSAVRDHRAN-FKQSLDVLMMAKDYVPAGTLTKTSIMLGC----------GETPDQVV----STMEKVRA 301 (375)
Q Consensus 237 ~hnlEtv~rl~~~mr~r~~s-~~~~l~vl~~ak~~~p~Gl~tkt~imvGl----------GET~ee~~----etl~~Lre 301 (375)
-+| |.... .++.-++++.|++ .|+++..++=.|- +-|.|.++ .+.+.+.+
T Consensus 100 RIN------------PGNig~~~~v~~vVe~Ak~---~g~piRIGVN~GSLek~~~~ky~~pt~ealveSAl~~a~~~e~ 164 (361)
T COG0821 100 RIN------------PGNIGFKDRVREVVEAAKD---KGIPIRIGVNAGSLEKRLLEKYGGPTPEALVESALEHAELLEE 164 (361)
T ss_pred EEC------------CcccCcHHHHHHHHHHHHH---cCCCEEEecccCchhHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 443 32222 2356788899998 4666666654442 22334333 23456777
Q ss_pred cCCcEEee
Q 017200 302 AGVDVMTF 309 (375)
Q Consensus 302 lgvd~v~i 309 (375)
++++-+-+
T Consensus 165 l~f~~i~i 172 (361)
T COG0821 165 LGFDDIKV 172 (361)
T ss_pred CCCCcEEE
Confidence 78765544
No 377
>cd00956 Transaldolase_FSA Transaldolase-like fructose-6-phosphate aldolases (FSA) found in bacteria and archaea, which are member of the MipB/TalC subfamily of class I aldolases. FSA catalyze an aldol cleavage of fructose 6-phosphate and do not utilize fructose, fructose 1-phosphate, fructose 1,6-phosphate, or dihydroxyacetone phosphate. The enzymes belong to the transaldolase family that serves in transfer reactions in the pentose phosphate cycle, and are more distantly related to fructose 1,6-bisphosphate aldolase.
Probab=69.51 E-value=43 Score=31.27 Aligned_cols=79 Identities=20% Similarity=0.179 Sum_probs=51.4
Q ss_pred HHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCCCcEEEeecCCCCCChHHHHHHHHcCcccccccccchHH
Q 017200 166 AEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETVEE 245 (375)
Q Consensus 166 a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGldv~~hnlEtv~r 245 (375)
|....+.|..+|-.--+--+|....|...+.++.+.+++. ++..+++.+.++ +...+.....+|+|.+... .+
T Consensus 115 a~~Aa~AGA~yvsP~vgR~~~~g~dg~~~i~~i~~~~~~~--~~~tkil~As~r-~~~ei~~a~~~Gad~vTv~----~~ 187 (211)
T cd00956 115 ALLAAKAGATYVSPFVGRIDDLGGDGMELIREIRTIFDNY--GFDTKILAASIR-NPQHVIEAALAGADAITLP----PD 187 (211)
T ss_pred HHHHHHcCCCEEEEecChHhhcCCCHHHHHHHHHHHHHHc--CCCceEEecccC-CHHHHHHHHHcCCCEEEeC----HH
Confidence 3345566888865555544555545666666766666554 344566777776 6777777888999988543 37
Q ss_pred HHHHhc
Q 017200 246 LQSAVR 251 (375)
Q Consensus 246 l~~~mr 251 (375)
++++|.
T Consensus 188 vl~~l~ 193 (211)
T cd00956 188 VLEQLL 193 (211)
T ss_pred HHHHHh
Confidence 777776
No 378
>PRK07028 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator; Validated
Probab=69.44 E-value=1.1e+02 Score=31.49 Aligned_cols=122 Identities=18% Similarity=0.178 Sum_probs=71.5
Q ss_pred CCcchHHHHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCCCcEEEee--cCCCCCChHHHHHHHHcCcc
Q 017200 157 PDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEAL--VPDFRGNNGCVREVAKSGLN 234 (375)
Q Consensus 157 ld~eEi~~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p~i~Ie~l--~pd~~g~~e~l~~L~~aGld 234 (375)
.++++.++.++++.+.|++.|.+. .+.. .....+.|+.|++.++...|-.- .-+. -...++...++|.|
T Consensus 13 ~~~~~~~~~~~~~~~~Gv~~ie~g------~p~~-~~~~~~~i~~l~~~~~~~~ii~D~kl~d~--g~~~v~~a~~aGAd 83 (430)
T PRK07028 13 LELDRAVEIAKEAVAGGADWIEAG------TPLI-KSEGMNAIRTLRKNFPDHTIVADMKTMDT--GAIEVEMAAKAGAD 83 (430)
T ss_pred CCHHHHHHHHHHHHhcCCcEEEeC------CHHH-HHhhHHHHHHHHHHCCCCEEEEEeeeccc--hHHHHHHHHHcCCC
Confidence 567888899999889999999752 1110 12346778888877654222110 0011 13378889999999
Q ss_pred ccc-ccccchHHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEe-cC-CCHHHHHHHHHHHHHcCCcEEeeec
Q 017200 235 VFA-HNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLG-CG-ETPDQVVSTMEKVRAAGVDVMTFGQ 311 (375)
Q Consensus 235 v~~-hnlEtv~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~tkt~imvG-lG-ET~ee~~etl~~Lrelgvd~v~i~q 311 (375)
.+. |.. .. -....++++.+++ .|+. +++| +. +|..+. ++.+.++|+|++.++.
T Consensus 84 gV~v~g~-~~-------------~~~~~~~i~~a~~---~G~~----~~~g~~s~~t~~e~---~~~a~~~GaD~I~~~p 139 (430)
T PRK07028 84 IVCILGL-AD-------------DSTIEDAVRAARK---YGVR----LMADLINVPDPVKR---AVELEELGVDYINVHV 139 (430)
T ss_pred EEEEecC-CC-------------hHHHHHHHHHHHH---cCCE----EEEEecCCCCHHHH---HHHHHhcCCCEEEEEe
Confidence 776 321 11 1112356667777 3443 3445 23 554333 4555678999998763
No 379
>COG3246 Uncharacterized conserved protein [Function unknown]
Probab=69.43 E-value=32 Score=34.04 Aligned_cols=61 Identities=15% Similarity=0.198 Sum_probs=43.9
Q ss_pred CCCcchHHHHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCCCcEEEeecC
Q 017200 156 PPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVP 216 (375)
Q Consensus 156 ~ld~eEi~~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p~i~Ie~l~p 216 (375)
|.+|+||.+.|.+.++.|..-++|=--..+.-+....+-|.+++..||+..+++.|...++
T Consensus 25 P~TP~qIA~~a~~aa~AGAai~HlHvRp~dG~pt~d~~~yr~~l~rIr~~~~D~vin~ttg 85 (298)
T COG3246 25 PVTPDQIASDAIAAAKAGAAILHLHVRPEDGRPTLDPEAYREVLERIRAAVGDAVINLTTG 85 (298)
T ss_pred CCCHHHHHHHHHHHHhcCcceEEEEecCCCCCcccCHHHHHHHHHHHHccCCCeEEEeccc
Confidence 6899999999999999998666554321111122236789999999999888877766554
No 380
>cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors.
Probab=69.37 E-value=1.2e+02 Score=30.00 Aligned_cols=211 Identities=14% Similarity=0.126 Sum_probs=105.5
Q ss_pred cCCCCcCCCCCCCCCCC----CCCcchHHHHHHHHHhcCCcEEEEEeeeCC-----------CC------------Cccc
Q 017200 139 CTRGCRFCNVKTSRAPP----PPDPDEPTNVAEAIASWGLDYVVITSVDRD-----------DL------------ADQG 191 (375)
Q Consensus 139 C~~~C~FC~v~~~r~~~----~ld~eEi~~~a~al~~~G~~eIvLTsgdr~-----------dl------------~d~G 191 (375)
++....||.+.... |. .++.+ .+.++.+.+.|+..|++=++... .+ +..|
T Consensus 37 ~~L~~~~~Gl~l~n-Pi~~AsG~~~~--~~~~~~~~~~G~Gavv~ktit~~~~~gn~~pr~~~~~~~~~~~n~~g~~n~g 113 (327)
T cd04738 37 PRLEVEVFGLTFPN-PVGLAAGFDKN--AEAIDALLALGFGFVEVGTVTPRPQPGNPKPRLFRLPEDEALINRMGFNNDG 113 (327)
T ss_pred CCcceEECCEECCC-CCEeCcCCCCC--HHHHHHHHHCCCcEEEEeccCCCCCCCCCCCCEEEccCccceeecCCCCCcc
Confidence 34556677766533 32 13322 13345556788888887776321 01 1224
Q ss_pred HHHHHHHHHHHHHhCCCcEEEeecCCC-----CC-ChHHHHHHHHcC--cccccccccchHHHHHHhcCCCCCHHHHHHH
Q 017200 192 SGHFAQTVRKLKELKPNMLIEALVPDF-----RG-NNGCVREVAKSG--LNVFAHNIETVEELQSAVRDHRANFKQSLDV 263 (375)
Q Consensus 192 ~~~~~~lir~Ik~~~p~i~Ie~l~pd~-----~g-~~e~l~~L~~aG--ldv~~hnlEtv~rl~~~mr~r~~s~~~~l~v 263 (375)
.+.|.+.++..+. .++.+-+.+.-. .+ -.+..+.+..++ .|.+..|+-.-. . .-.+ -..+.+...++
T Consensus 114 ~~~~~~~l~~~~~--~~~plivsi~g~~~~~~~~~~~d~~~~~~~~~~~ad~ielN~scP~-~-~g~~-~~~~~~~~~~i 188 (327)
T cd04738 114 ADAVAKRLKKRRP--RGGPLGVNIGKNKDTPLEDAVEDYVIGVRKLGPYADYLVVNVSSPN-T-PGLR-DLQGKEALREL 188 (327)
T ss_pred HHHHHHHHHHhcc--CCCeEEEEEeCCCCCcccccHHHHHHHHHHHHhhCCEEEEECCCCC-C-Cccc-cccCHHHHHHH
Confidence 5556555544332 233332222111 00 123333333333 676666653211 0 0112 13455666777
Q ss_pred HHHHHHhCC-----CCceEEEeEEEecCCCHHHHHHHHHHHHHcCCcEEeeecCCC-------CCCCC-C-Ccc-ccCCH
Q 017200 264 LMMAKDYVP-----AGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQYMR-------PSKRH-M-PVS-EYITP 328 (375)
Q Consensus 264 l~~ak~~~p-----~Gl~tkt~imvGlGET~ee~~etl~~Lrelgvd~v~i~qYl~-------P~~~~-~-~v~-~~v~p 328 (375)
++.+++... .-+.+|.+ .+.+++++.+..+.+.+.|+|.|++.+=+. |.... . -+. ..+.|
T Consensus 189 v~av~~~~~~~~~~~Pv~vKl~----~~~~~~~~~~ia~~l~~aGad~I~~~n~~~~~~~~~~~~~~~~~gG~sG~~~~~ 264 (327)
T cd04738 189 LTAVKEERNKLGKKVPLLVKIA----PDLSDEELEDIADVALEHGVDGIIATNTTISRPGLLRSPLANETGGLSGAPLKE 264 (327)
T ss_pred HHHHHHHHhhcccCCCeEEEeC----CCCCHHHHHHHHHHHHHcCCcEEEEECCcccccccccccccCCCCccCChhhhH
Confidence 777777532 11334443 346788999999999999999998754211 10000 0 000 01223
Q ss_pred HHHHHHHHHHHHh--hhhhhccchhhhhhcchhHHH
Q 017200 329 EAFERYRALGMEM--GFRYVASGPMVRSSYKVVGWC 362 (375)
Q Consensus 329 e~~~~l~~~a~~~--gf~~~~sgp~vrssy~a~~~~ 362 (375)
-..+..+.+.... ....+++| -|++.-.|-|++
T Consensus 265 ~~l~~v~~l~~~~~~~ipIi~~G-GI~t~~da~e~l 299 (327)
T cd04738 265 RSTEVLRELYKLTGGKIPIIGVG-GISSGEDAYEKI 299 (327)
T ss_pred HHHHHHHHHHHHhCCCCcEEEEC-CCCCHHHHHHHH
Confidence 3456666666666 45666777 666655554444
No 381
>TIGR02319 CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phosphorylmutase. This family consists of carboxyvinyl-carboxyphosphonate phosphorylmutase (CPEP phosphonomutase), an unusual enzyme involved in the biosynthesis of the antibiotic bialaphos. So far, it is known only in that pathway and only in Streptomyces hygroscopicus. Some related proteins annotated as being functionally equivalent are likely misannotated examples of methylisocitrate lyase, an enzyme of priopionate utilization.
Probab=69.20 E-value=1.2e+02 Score=29.93 Aligned_cols=186 Identities=13% Similarity=0.160 Sum_probs=0.0
Q ss_pred HHHHHhcCCcEEEEEeee----CCCCCcccHHHHHHHHHHHHHhCCCcEEEeecC---CCCCChHH---HHHHHHcCccc
Q 017200 166 AEAIASWGLDYVVITSVD----RDDLADQGSGHFAQTVRKLKELKPNMLIEALVP---DFRGNNGC---VREVAKSGLNV 235 (375)
Q Consensus 166 a~al~~~G~~eIvLTsgd----r~dl~d~G~~~~~~lir~Ik~~~p~i~Ie~l~p---d~~g~~e~---l~~L~~aGldv 235 (375)
|+.+.+.|++-+-+||-. .-.+||.|.-.+.+++..++...-.+.+.++.- .|-+..+. ++.+.++|+..
T Consensus 29 Arl~e~aGf~ai~~sg~~~~as~lG~pD~g~l~~~e~~~~~~~I~~~~~lPv~aD~dtGyG~~~~v~r~V~~~~~aGaag 108 (294)
T TIGR02319 29 AKVIQQAGFPAVHMTGSGTSASMLGLPDLGFTSVSEQAINAKNIVLAVDVPVIMDADAGYGNAMSVWRATREFERVGIVG 108 (294)
T ss_pred HHHHHHcCCCEEEecHHHHHHHHcCCCCcCCCCHHHHHHHHHHHHhccCCCEEEECCCCCCCcHHHHHHHHHHHHcCCeE
Q ss_pred ccccccchHHHHHHhcCCC-----CCHHHHHHHHHHHHHhCCCC---ceEEEeEEEecCCCHHHHHHHHHHHHHcCCcEE
Q 017200 236 FAHNIETVEELQSAVRDHR-----ANFKQSLDVLMMAKDYVPAG---TLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVM 307 (375)
Q Consensus 236 ~~hnlEtv~rl~~~mr~r~-----~s~~~~l~vl~~ak~~~p~G---l~tkt~imvGlGET~ee~~etl~~Lrelgvd~v 307 (375)
++.- |..+++-|+.. .+.++..+.|+.+++....- +...|+-. .++..+|.++-.+.-.+.|.|.|
T Consensus 109 i~IE----Dq~~pK~cg~~~~k~lv~~ee~~~kI~Aa~~A~~~~d~~I~ARTDa~--~~~g~deaI~Ra~aY~eAGAD~i 182 (294)
T TIGR02319 109 YHLE----DQVNPKRCGHLEGKRLISTEEMTGKIEAAVEAREDEDFTIIARTDAR--ESFGLDEAIRRSREYVAAGADCI 182 (294)
T ss_pred EEEE----CCCCccccCCCCCccccCHHHHHHHHHHHHHhccCCCeEEEEEeccc--ccCCHHHHHHHHHHHHHhCCCEE
Q ss_pred eeecCCCCCCC------------CCCc---------cccCCHHHHHHHHHHHHHhhhhhhccchhh-hhhcchhHHHHHH
Q 017200 308 TFGQYMRPSKR------------HMPV---------SEYITPEAFERYRALGMEMGFRYVASGPMV-RSSYKVVGWCYYL 365 (375)
Q Consensus 308 ~i~qYl~P~~~------------~~~v---------~~~v~pe~~~~l~~~a~~~gf~~~~sgp~v-rssy~a~~~~~~~ 365 (375)
-+ |+.+ ..|+ ...++.+++..| ||..+.-|+.. |+.|+|=+..++.
T Consensus 183 fi-----~~~~~~~ei~~~~~~~~~P~~~nv~~~~~~p~~s~~eL~~l-------G~~~v~~~~~~~~aa~~a~~~~~~~ 250 (294)
T TIGR02319 183 FL-----EAMLDVEEMKRVRDEIDAPLLANMVEGGKTPWLTTKELESI-------GYNLAIYPLSGWMAAASVLRKLFTE 250 (294)
T ss_pred Ee-----cCCCCHHHHHHHHHhcCCCeeEEEEecCCCCCCCHHHHHHc-------CCcEEEEcHHHHHHHHHHHHHHHHH
Q ss_pred HHhh
Q 017200 366 IFNY 369 (375)
Q Consensus 366 ~~~~ 369 (375)
|.+.
T Consensus 251 l~~~ 254 (294)
T TIGR02319 251 LREA 254 (294)
T ss_pred HHHc
No 382
>PRK13753 dihydropteroate synthase; Provisional
Probab=69.17 E-value=27 Score=34.32 Aligned_cols=77 Identities=17% Similarity=0.180 Sum_probs=50.1
Q ss_pred CCCcchHHHHHHHHHhcCCcEEEEEee-eCCCCCcc----cHHHHHHHHHHHHHhCCCcEEEeecCCCCCChHHHHHHHH
Q 017200 156 PPDPDEPTNVAEAIASWGLDYVVITSV-DRDDLADQ----GSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAK 230 (375)
Q Consensus 156 ~ld~eEi~~~a~al~~~G~~eIvLTsg-dr~dl~d~----G~~~~~~lir~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~ 230 (375)
.++++..++.++++.+.|.+-|-|=|. .++....- -...+..+|+.|++.. +.| ++-.+ +.+.++...+
T Consensus 21 ~~~~d~a~~~a~~m~~~GAdIIDIGgeSTrPga~~vs~eeE~~Rv~pvI~~l~~~~--~~I--SIDT~--~~~va~~al~ 94 (279)
T PRK13753 21 RLDPAGAVTAAIEMLRVGSDVVDVGPAASHPDARPVSPADEIRRIAPLLDALSDQM--HRV--SIDSF--QPETQRYALK 94 (279)
T ss_pred CCCHHHHHHHHHHHHHCCCcEEEECCCCCCCCCCcCCHHHHHHHHHHHHHHHHhCC--CcE--EEECC--CHHHHHHHHH
Confidence 478899999999999999998887665 34533210 1334557777777642 222 22223 5677777778
Q ss_pred cCcccccc
Q 017200 231 SGLNVFAH 238 (375)
Q Consensus 231 aGldv~~h 238 (375)
+|+|+++-
T Consensus 95 aGadiIND 102 (279)
T PRK13753 95 RGVGYLND 102 (279)
T ss_pred cCCCEEEe
Confidence 88877643
No 383
>PF02219 MTHFR: Methylenetetrahydrofolate reductase; InterPro: IPR003171 This family includes the 5,10-methylenetetrahydrofolate reductase 1.7.99.5 from EC from bacteria and methylenetetrahydrofolate reductase 1.5.1.20 from EC from eukaryotes. The structure for this domain is known [] to be a TIM barrel.; GO: 0004489 methylenetetrahydrofolate reductase (NADPH) activity, 0006555 methionine metabolic process, 0055114 oxidation-reduction process; PDB: 3IJD_B 1B5T_B 3FSU_C 1ZPT_C 2FMO_B 3FST_C 2FMN_C 1ZP3_A 1ZP4_B 1ZRQ_B ....
Probab=69.13 E-value=23 Score=34.49 Aligned_cols=109 Identities=11% Similarity=0.073 Sum_probs=58.6
Q ss_pred CcchHHHHHHHHHhcCCcEEEEEeeeCCCCCc------ccHHHHHHHHHHHHHhCCC-cEEEe-ecCCC---CCC-h---
Q 017200 158 DPDEPTNVAEAIASWGLDYVVITSVDRDDLAD------QGSGHFAQTVRKLKELKPN-MLIEA-LVPDF---RGN-N--- 222 (375)
Q Consensus 158 d~eEi~~~a~al~~~G~~eIvLTsgdr~dl~d------~G~~~~~~lir~Ik~~~p~-i~Ie~-l~pd~---~g~-~--- 222 (375)
+.+++......+.+.|++.|++..||.+...| .++.+..++++.|++...+ ..+.+ ..|.. ..+ .
T Consensus 83 n~~~l~~~L~~~~~~Gi~niL~l~GD~~~~g~~~~~~~~~~~~~~~Li~~i~~~~~~~~~i~va~~P~~hp~~~~~~~~~ 162 (287)
T PF02219_consen 83 NREALQSDLLGAHALGIRNILALTGDPPKGGDHFAKPVFDFDYALDLIRLIRQEYGDDFSIGVAGYPEGHPEAPDFEAEL 162 (287)
T ss_dssp BHHHHHHHHHHHHHTT--EEEEESS-TSTTSSS----TTS-SSHHHHHHHHHHHHGGGSEEEEEE-TTHHTTCSSHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCeEEEecCCCCCCCccccCCCchhHHHHHHHHHHHHhcCcccccccccCCCCCccccCHHHHH
Confidence 46788888889999999999999998653322 2244567888888854433 34442 33421 112 1
Q ss_pred HHHHHHHHcCcccccccccchHHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCc--eEEEeEE
Q 017200 223 GCVREVAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGT--LTKTSIM 282 (375)
Q Consensus 223 e~l~~L~~aGldv~~hnlEtv~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl--~tkt~im 282 (375)
+.++.=.++|+|.+- .-.-++.+...+.++.+++ .|+ ++-.+||
T Consensus 163 ~~l~~Ki~aGA~f~i-------------TQ~~fd~~~~~~~~~~~~~---~g~~~pIi~GI~ 208 (287)
T PF02219_consen 163 KRLKKKIDAGADFII-------------TQPFFDAEAFERFLDRLRE---AGIDVPIIPGIM 208 (287)
T ss_dssp HHHHHHHHTTESEEE-------------EEE-SSHHHHHHHHHHHHH---TTHTSEEEEEEE
T ss_pred HHHHHHHHCCCCEEe-------------ccccCCHHHHHHHHHHHHH---cCCCCcEEEEEe
Confidence 223333467776431 1013455556666666666 343 4444444
No 384
>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated
Probab=69.09 E-value=1.2e+02 Score=31.03 Aligned_cols=173 Identities=13% Similarity=0.090 Sum_probs=0.0
Q ss_pred CcchHHHHHHHHHhcCCcEEEEEee--eCCCCCcccHH------HHHHHHHHHHHhCCCcEEEeecCCCCCChHHHHHHH
Q 017200 158 DPDEPTNVAEAIASWGLDYVVITSV--DRDDLADQGSG------HFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVA 229 (375)
Q Consensus 158 d~eEi~~~a~al~~~G~~eIvLTsg--dr~dl~d~G~~------~~~~lir~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~ 229 (375)
++++..+.++.+.+.|++.|-|=-+ +.....+.|.. .+.++++.+++...--.+--+.|++....+.++.+.
T Consensus 111 ~~~~~~~~a~~~~~~g~d~ielN~scP~~~~~~~~g~~~~~~~~~~~~i~~~v~~~~~~Pv~vKl~p~~~~~~~~a~~~~ 190 (420)
T PRK08318 111 NEEEWKEIAPLVEETGADGIELNFGCPHGMSERGMGSAVGQVPELVEMYTRWVKRGSRLPVIVKLTPNITDIREPARAAK 190 (420)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEeCCCCCCccccCCcccccCCHHHHHHHHHHHHhccCCcEEEEcCCCcccHHHHHHHHH
Q ss_pred HcCccccc----------ccccch--------HHHHHHhcCCCCCHHHHHHHHHHHHHhC---CCCceEEEeEEEecCCC
Q 017200 230 KSGLNVFA----------HNIETV--------EELQSAVRDHRANFKQSLDVLMMAKDYV---PAGTLTKTSIMLGCGET 288 (375)
Q Consensus 230 ~aGldv~~----------hnlEtv--------~rl~~~mr~r~~s~~~~l~vl~~ak~~~---p~Gl~tkt~imvGlGET 288 (375)
++|+|.+. ..+|+. ..-+.-+. ..+-....|+.+..+++.. .- -.+.++-| .|
T Consensus 191 ~~Gadgi~~~Nt~~~~~~id~~~~~~~p~~~~~~~~gg~S-G~a~~p~~l~~v~~~~~~~~~~~i-pIig~GGI----~s 264 (420)
T PRK08318 191 RGGADAVSLINTINSITGVDLDRMIPMPIVNGKSSHGGYC-GPAVKPIALNMVAEIARDPETRGL-PISGIGGI----ET 264 (420)
T ss_pred HCCCCEEEEecccCccccccccccCCCceecCCCCccccc-chhhhHHHHHHHHHHHhccccCCC-CEEeecCc----CC
Q ss_pred HHHHHHHHHHHHHcCCcEEeeecCCCCCCCCCCccccCCHHHHHHHHHHHHHhhhhhh
Q 017200 289 PDQVVSTMEKVRAAGVDVMTFGQYMRPSKRHMPVSEYITPEAFERYRALGMEMGFRYV 346 (375)
Q Consensus 289 ~ee~~etl~~Lrelgvd~v~i~qYl~P~~~~~~v~~~v~pe~~~~l~~~a~~~gf~~~ 346 (375)
.+|.++.|. .|.+.|-++ +-.+--...+..+-.+.|..+-.+.||...
T Consensus 265 ~~da~e~i~----aGA~~Vqi~------ta~~~~gp~ii~~I~~~L~~~l~~~g~~si 312 (420)
T PRK08318 265 WRDAAEFIL----LGAGTVQVC------TAAMQYGFRIVEDMISGLSHYMDEKGFASL 312 (420)
T ss_pred HHHHHHHHH----hCCChheee------eeeccCCchhHHHHHHHHHHHHHHcCcchH
No 385
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=69.01 E-value=20 Score=33.27 Aligned_cols=73 Identities=16% Similarity=0.171 Sum_probs=49.1
Q ss_pred chHHHHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCCCcEEEeecCCCCCChHHHHHHHHcCcccccc
Q 017200 160 DEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAH 238 (375)
Q Consensus 160 eEi~~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGldv~~h 238 (375)
..+++.++.+.+.|+++++++..+++... .|. -.++++.+.+.. ++.+-+.- .. .+.+.++.+++.|+|.+-.
T Consensus 145 ~~~~~~~~~~~~~g~~~ii~~~~~~~g~~-~g~--~~~~i~~i~~~~-~ipvia~G-Gi-~~~~di~~~~~~Gadgv~i 217 (230)
T TIGR00007 145 VSLEELAKRLEELGLEGIIYTDISRDGTL-SGP--NFELTKELVKAV-NVPVIASG-GV-SSIDDLIALKKLGVYGVIV 217 (230)
T ss_pred CCHHHHHHHHHhCCCCEEEEEeecCCCCc-CCC--CHHHHHHHHHhC-CCCEEEeC-CC-CCHHHHHHHHHCCCCEEEE
Confidence 46677888889999999999988875332 232 256777777653 33333222 22 2678888898999886544
No 386
>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=68.86 E-value=24 Score=34.79 Aligned_cols=65 Identities=18% Similarity=0.350 Sum_probs=46.9
Q ss_pred HHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCCCcEEEeecCCCCCChHHHHHHHHcCccccccc
Q 017200 164 NVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHN 239 (375)
Q Consensus 164 ~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGldv~~hn 239 (375)
+++.++.+.|+++|.|- ..+.+.+.+.++.+++..|++.+++.-+ . +.+.+..++..|+|++..+
T Consensus 207 eea~eA~~~GaD~I~LD--------n~~~e~l~~av~~~~~~~~~i~leAsGG-I--t~~ni~~ya~tGvD~Isvg 271 (288)
T PRK07428 207 EQVQEALEYGADIIMLD--------NMPVDLMQQAVQLIRQQNPRVKIEASGN-I--TLETIRAVAETGVDYISSS 271 (288)
T ss_pred HHHHHHHHcCCCEEEEC--------CCCHHHHHHHHHHHHhcCCCeEEEEECC-C--CHHHHHHHHHcCCCEEEEc
Confidence 34445558889888653 1235667888888877678888876533 3 7899999999999988653
No 387
>PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D ....
Probab=68.48 E-value=26 Score=31.72 Aligned_cols=65 Identities=26% Similarity=0.401 Sum_probs=46.7
Q ss_pred HHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCCCcEEEeecCCCCCChHHHHHHHHcCccccccc
Q 017200 164 NVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHN 239 (375)
Q Consensus 164 ~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGldv~~hn 239 (375)
++++++.+.|++.|.|=-. ..+.+.+.++.++...|.+.|++.- .+ +.+.+..+.+.|+|++..+
T Consensus 91 ee~~ea~~~g~d~I~lD~~--------~~~~~~~~v~~l~~~~~~v~ie~SG-GI--~~~ni~~ya~~gvD~isvg 155 (169)
T PF01729_consen 91 EEAEEALEAGADIIMLDNM--------SPEDLKEAVEELRELNPRVKIEASG-GI--TLENIAEYAKTGVDVISVG 155 (169)
T ss_dssp HHHHHHHHTT-SEEEEES---------CHHHHHHHHHHHHHHTTTSEEEEES-SS--STTTHHHHHHTT-SEEEEC
T ss_pred HHHHHHHHhCCCEEEecCc--------CHHHHHHHHHHHhhcCCcEEEEEEC-CC--CHHHHHHHHhcCCCEEEcC
Confidence 4566677889888876422 1466888899888888998888654 33 6788999999999987543
No 388
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=68.44 E-value=23 Score=32.85 Aligned_cols=74 Identities=12% Similarity=0.164 Sum_probs=49.6
Q ss_pred cchHHHHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCCCcEEEeecCCCCCChHHHHHHHHcCcccccc
Q 017200 159 PDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAH 238 (375)
Q Consensus 159 ~eEi~~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGldv~~h 238 (375)
..++.+.++.+.++|++++++++.+++... .|. -.++++++++..+ +.|-+ .++.. +.+.+..+.+.|+|.+-.
T Consensus 145 ~~~~~~~~~~~~~~ga~~iii~~~~~~g~~-~g~--~~~~i~~i~~~~~-ipvi~-~GGi~-~~~di~~~~~~Ga~gv~v 218 (234)
T cd04732 145 EVSLEELAKRFEELGVKAIIYTDISRDGTL-SGP--NFELYKELAAATG-IPVIA-SGGVS-SLDDIKALKELGVAGVIV 218 (234)
T ss_pred CCCHHHHHHHHHHcCCCEEEEEeecCCCcc-CCC--CHHHHHHHHHhcC-CCEEE-ecCCC-CHHHHHHHHHCCCCEEEE
Confidence 456778888899999999999988765432 232 2577888877542 33322 22222 677788888889886644
No 389
>PRK05437 isopentenyl pyrophosphate isomerase; Provisional
Probab=68.44 E-value=95 Score=31.32 Aligned_cols=135 Identities=21% Similarity=0.306 Sum_probs=74.8
Q ss_pred HHHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCCCcEEEe--ecCCCCC-ChHH-HHHHHHcCcccccc
Q 017200 163 TNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEA--LVPDFRG-NNGC-VREVAKSGLNVFAH 238 (375)
Q Consensus 163 ~~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p~i~Ie~--l~pd~~g-~~e~-l~~L~~aGldv~~h 238 (375)
.+.|+...+.|+--. +.++ +-.+.+ .+ +.+.++.+++..|+..+-+ ..+...+ +.+. .+.+...+.|.+..
T Consensus 80 ~~La~~a~~~G~~~~-~Gs~-~~~~~~--~~-~~~~~~~vr~~~p~~p~~aNl~~~~~~~~~~~~~~~~~~~~~adal~l 154 (352)
T PRK05437 80 RKLAEAAEELGIAMG-VGSQ-RAALKD--PE-LADSFSVVRKVAPDGLLFANLGAVQLYGYGVEEAQRAVEMIEADALQI 154 (352)
T ss_pred HHHHHHHHHcCCCeE-eccc-HhhccC--hh-hHHHHHHHHHHCCCceEEeecCccccCCCCHHHHHHHHHhcCCCcEEE
Confidence 556677777776333 2222 211222 23 6788888998887765433 2222211 2333 33444456676666
Q ss_pred cccchHHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcCCcEEeeec
Q 017200 239 NIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQ 311 (375)
Q Consensus 239 nlEtv~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~tkt~imvGlGET~ee~~etl~~Lrelgvd~v~i~q 311 (375)
++....++... ....+++.+++.++.+++..+-=+.+| ++|.|-| .+.++.|.+.|+|.|.++.
T Consensus 155 ~l~~~qe~~~p--~g~~~f~~~le~i~~i~~~~~vPVivK---~~g~g~s----~~~a~~l~~~Gvd~I~Vsg 218 (352)
T PRK05437 155 HLNPLQELVQP--EGDRDFRGWLDNIAEIVSALPVPVIVK---EVGFGIS----KETAKRLADAGVKAIDVAG 218 (352)
T ss_pred eCccchhhcCC--CCcccHHHHHHHHHHHHHhhCCCEEEE---eCCCCCc----HHHHHHHHHcCCCEEEECC
Confidence 55322222111 123368888999999998531102344 2477766 4666778889999999853
No 390
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=68.43 E-value=91 Score=32.83 Aligned_cols=169 Identities=17% Similarity=0.203 Sum_probs=91.6
Q ss_pred hHHHHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhC------CCcEEEeecCCCCCChHHHHHHHHcCcc
Q 017200 161 EPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELK------PNMLIEALVPDFRGNNGCVREVAKSGLN 234 (375)
Q Consensus 161 Ei~~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~------p~i~Ie~l~pd~~g~~e~l~~L~~aGld 234 (375)
.+.+.++.+.+.++..+.++..+.. + .|.-...++++.+.... ..+.+......-..+.+.++.|.++|+|
T Consensus 166 sl~eal~~m~~~~~~~lpVVDe~g~-l--vGiIT~~DLl~~~~~p~a~~d~~g~l~V~aai~~~~~~~e~a~~L~~agvd 242 (486)
T PRK05567 166 TLEEALELLHEHRIEKLPVVDDNGR-L--KGLITVKDIEKAEEFPNACKDEQGRLRVGAAVGVGADNEERAEALVEAGVD 242 (486)
T ss_pred CHHHHHHHHHHcCCCEEEEEcCCCc-E--EEEEEhHHhhhhhhCCCcccccCCCEEEEeecccCcchHHHHHHHHHhCCC
Confidence 3445566677888888877642211 1 12222345555442111 1234443332111146889999999999
Q ss_pred cccccccchHHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcCCcEEeeecCCC
Q 017200 235 VFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQYMR 314 (375)
Q Consensus 235 v~~hnlEtv~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~tkt~imvGlGET~ee~~etl~~Lrelgvd~v~i~qYl~ 314 (375)
++. +++.+ ......++.++.+++..| ..-+|+|-+-|.++..+.+ ++|+|.|-+| +-
T Consensus 243 viv--vD~a~----------g~~~~vl~~i~~i~~~~p-----~~~vi~g~v~t~e~a~~l~----~aGad~i~vg--~g 299 (486)
T PRK05567 243 VLV--VDTAH----------GHSEGVLDRVREIKAKYP-----DVQIIAGNVATAEAARALI----EAGADAVKVG--IG 299 (486)
T ss_pred EEE--EECCC----------CcchhHHHHHHHHHhhCC-----CCCEEEeccCCHHHHHHHH----HcCCCEEEEC--CC
Confidence 763 22211 123567888888888544 3456778889998876554 6899999875 23
Q ss_pred CCCCC-CC-ccccCCHHHHHHHHHHHH---Hhhhhhhccchhhhhhcc
Q 017200 315 PSKRH-MP-VSEYITPEAFERYRALGM---EMGFRYVASGPMVRSSYK 357 (375)
Q Consensus 315 P~~~~-~~-v~~~v~pe~~~~l~~~a~---~~gf~~~~sgp~vrssy~ 357 (375)
|...+ .. +..+-.| .+..+.+++. +.|....+.| -+|++..
T Consensus 300 ~gs~~~~r~~~~~g~p-~~~~~~~~~~~~~~~~~~viadG-Gi~~~~d 345 (486)
T PRK05567 300 PGSICTTRIVAGVGVP-QITAIADAAEAAKKYGIPVIADG-GIRYSGD 345 (486)
T ss_pred CCccccceeecCCCcC-HHHHHHHHHHHhccCCCeEEEcC-CCCCHHH
Confidence 53211 11 1111112 3444444433 3455566666 5555543
No 391
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=68.23 E-value=28 Score=33.96 Aligned_cols=77 Identities=10% Similarity=0.093 Sum_probs=50.0
Q ss_pred CcchHHHHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCCCcEEEe-ecCCCCCChHHHHHHHHcCcccc
Q 017200 158 DPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEA-LVPDFRGNNGCVREVAKSGLNVF 236 (375)
Q Consensus 158 d~eEi~~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p~i~Ie~-l~pd~~g~~e~l~~L~~aGldv~ 236 (375)
+++.+.+.++++.+.|++.|.|.=-..--. ...+.++++.+++..|++.+++ .+-|+.--......-.++|++.+
T Consensus 145 ~~~~~~~~~~~~~~~G~~~i~l~DT~G~~~----P~~v~~l~~~l~~~~~~~~i~~H~Hnd~Gla~AN~laA~~aGa~~v 220 (280)
T cd07945 145 SPDYVFQLVDFLSDLPIKRIMLPDTLGILS----PFETYTYISDMVKRYPNLHFDFHAHNDYDLAVANVLAAVKAGIKGL 220 (280)
T ss_pred CHHHHHHHHHHHHHcCCCEEEecCCCCCCC----HHHHHHHHHHHHhhCCCCeEEEEeCCCCCHHHHHHHHHHHhCCCEE
Confidence 478999999999999999987652111111 3568899999998888877764 33333101222333456788876
Q ss_pred cc
Q 017200 237 AH 238 (375)
Q Consensus 237 ~h 238 (375)
.-
T Consensus 221 d~ 222 (280)
T cd07945 221 HT 222 (280)
T ss_pred EE
Confidence 54
No 392
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=68.03 E-value=33 Score=33.01 Aligned_cols=81 Identities=17% Similarity=0.133 Sum_probs=52.2
Q ss_pred CCcchHHHHHHHHHhcCCcEEEEEeeeCC---CC---------Cccc---H---HHHHHHHHHHHHhCC-CcEEEeecCC
Q 017200 157 PDPDEPTNVAEAIASWGLDYVVITSVDRD---DL---------ADQG---S---GHFAQTVRKLKELKP-NMLIEALVPD 217 (375)
Q Consensus 157 ld~eEi~~~a~al~~~G~~eIvLTsgdr~---dl---------~d~G---~---~~~~~lir~Ik~~~p-~i~Ie~l~pd 217 (375)
.+.+++.+.++.+.+.|++.|++++.... +. ..+| . ..-.+.++.|++..| ++.|-.. +.
T Consensus 173 ~~~~~~~~~a~~l~~~Gad~i~~~~~~~~~~~~~~~~~~~~~~~~~g~sg~~~~~~~~~~v~~i~~~~~~~ipiia~-GG 251 (289)
T cd02810 173 FDLEDIVELAKAAERAGADGLTAINTISGRVVDLKTVGPGPKRGTGGLSGAPIRPLALRWVARLAARLQLDIPIIGV-GG 251 (289)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEEcccCccceecccCccccCCCCCccCcHHHHHHHHHHHHHHHHhcCCCCCEEEE-CC
Confidence 56678999999999999999999865321 10 0111 1 112566788877664 4554332 33
Q ss_pred CCCChHHHHHHHHcCccccccc
Q 017200 218 FRGNNGCVREVAKSGLNVFAHN 239 (375)
Q Consensus 218 ~~g~~e~l~~L~~aGldv~~hn 239 (375)
.. +.+.+.++..+|+|.+..+
T Consensus 252 I~-~~~da~~~l~~GAd~V~vg 272 (289)
T cd02810 252 ID-SGEDVLEMLMAGASAVQVA 272 (289)
T ss_pred CC-CHHHHHHHHHcCccHheEc
Confidence 32 6677888888999877653
No 393
>PRK08610 fructose-bisphosphate aldolase; Reviewed
Probab=67.99 E-value=1.3e+02 Score=29.68 Aligned_cols=168 Identities=17% Similarity=0.241 Sum_probs=99.2
Q ss_pred CCcchHHHHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCC-CcEEEeecCCCCCChHHHHHHHHcCccc
Q 017200 157 PDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKP-NMLIEALVPDFRGNNGCVREVAKSGLNV 235 (375)
Q Consensus 157 ld~eEi~~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p-~i~Ie~l~pd~~g~~e~l~~L~~aGldv 235 (375)
.+.+.+...++++.+.+.--|+-++...-.+. +|...+..+++.+.+... .+.| ++.-|...+.|.+..-.++|-++
T Consensus 26 ~n~e~~~avi~AAee~~sPvIl~~~~~~~~~~-~~~~~~~~~~~~~A~~~~~~vPV-~lHLDHg~~~e~i~~ai~~GftS 103 (286)
T PRK08610 26 NNLEFTQAILEASQEENAPVILGVSEGAARYM-SGFYTVVKMVEGLMHDLNITIPV-AIHLDHGSSFEKCKEAIDAGFTS 103 (286)
T ss_pred CCHHHHHHHHHHHHHHCCCEEEEcCccHHhhc-CcHHHHHHHHHHHHHHcCCCCCE-EEECCCCCCHHHHHHHHHcCCCE
Confidence 35677778888888888877776665433331 236678888888876643 1333 25557666788888888998665
Q ss_pred ccccccchH-HHHHHhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEec--CCCH---------HHHHHHHHHHHHcC
Q 017200 236 FAHNIETVE-ELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGC--GETP---------DQVVSTMEKVRAAG 303 (375)
Q Consensus 236 ~~hnlEtv~-rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~tkt~imvGl--GET~---------ee~~etl~~Lrelg 303 (375)
+ .++.+. .+- -+.+...++++.||. .|+.+-.- +|. |+.+ -+-.+..+++++.|
T Consensus 104 V--M~DgS~l~~e-------eNi~~T~~vve~Ah~---~gv~VEaE--lG~vgg~ed~~~~~~~~yT~peea~~Fv~~Tg 169 (286)
T PRK08610 104 V--MIDASHSPFE-------ENVATTKKVVEYAHE---KGVSVEAE--LGTVGGQEDDVVADGIIYADPKECQELVEKTG 169 (286)
T ss_pred E--EEeCCCCCHH-------HHHHHHHHHHHHHHH---cCCEEEEE--EeccCCccCCCCCcccccCCHHHHHHHHHHHC
Confidence 4 344332 111 123445678888887 35554332 233 2211 25567888999999
Q ss_pred CcEEeeecCCCCCCCCCCccccCCHH-HHHHHHHHHHHhhhhhh
Q 017200 304 VDVMTFGQYMRPSKRHMPVSEYITPE-AFERYRALGMEMGFRYV 346 (375)
Q Consensus 304 vd~v~i~qYl~P~~~~~~v~~~v~pe-~~~~l~~~a~~~gf~~~ 346 (375)
+|.+-+. + ++-|-.-.. .|. .|++|+++....+...|
T Consensus 170 vD~LAva-i---Gt~HG~Y~~--~p~Ld~~~L~~I~~~~~vPLV 207 (286)
T PRK08610 170 IDALAPA-L---GSVHGPYKG--EPKLGFKEMEEIGLSTGLPLV 207 (286)
T ss_pred CCEEEee-c---cccccccCC--CCCCCHHHHHHHHHHHCCCEE
Confidence 9986653 1 122211100 121 47788888777766433
No 394
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=67.72 E-value=83 Score=33.35 Aligned_cols=166 Identities=16% Similarity=0.177 Sum_probs=88.7
Q ss_pred HHHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHH------HHHhCCCcEEEeecCCCCCChHHHHHHHHcCcccc
Q 017200 163 TNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRK------LKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVF 236 (375)
Q Consensus 163 ~~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~------Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGldv~ 236 (375)
.+..+.+.+.++..+.++..+.. + .|.-...++++. .+.....++|.+..+.-....+.++.|.++|+|++
T Consensus 181 ~eAl~lm~e~~i~~LPVVd~~g~-l--iGIIT~~DIl~~~~~p~a~~D~~GrL~Vgaavg~~~~~~~~~~~l~~ag~d~i 257 (495)
T PTZ00314 181 EEANEVLRESRKGKLPIVNDNGE-L--VALVSRSDLKKNRGYPNASLDSNGQLLVGAAISTRPEDIERAAALIEAGVDVL 257 (495)
T ss_pred HHHHHHHHHcCCCeEEEEcCCCc-E--EEEEEehHhhhcccCchhhhccCCCEEEEEEECCCHHHHHHHHHHHHCCCCEE
Confidence 34455566778887776532210 0 111111222222 22223356676665532224678899999999987
Q ss_pred cccccchHHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcCCcEEeeecCCCCC
Q 017200 237 AHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQYMRPS 316 (375)
Q Consensus 237 ~hnlEtv~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~tkt~imvGlGET~ee~~etl~~Lrelgvd~v~i~qYl~P~ 316 (375)
.... . .+++ ...++.++.+++.+|. ..||+|-.-|.++..+ +.++|+|+|-++ +-|+
T Consensus 258 ~id~--a---------~G~s-~~~~~~i~~ik~~~~~-----~~v~aG~V~t~~~a~~----~~~aGad~I~vg--~g~G 314 (495)
T PTZ00314 258 VVDS--S---------QGNS-IYQIDMIKKLKSNYPH-----VDIIAGNVVTADQAKN----LIDAGADGLRIG--MGSG 314 (495)
T ss_pred EEec--C---------CCCc-hHHHHHHHHHHhhCCC-----ceEEECCcCCHHHHHH----HHHcCCCEEEEC--CcCC
Confidence 6431 1 1222 3347889999986553 4567787778877664 457999998765 3342
Q ss_pred CC-CCC-ccc--cCCHHHHHHHHHHHHHhhhhhhccchhhhhh
Q 017200 317 KR-HMP-VSE--YITPEAFERYRALGMEMGFRYVASGPMVRSS 355 (375)
Q Consensus 317 ~~-~~~-v~~--~v~pe~~~~l~~~a~~~gf~~~~sgp~vrss 355 (375)
.- .+. +.. ...-.......+++.+.|....+.| -+|.+
T Consensus 315 s~~~t~~~~~~g~p~~~ai~~~~~~~~~~~v~vIadG-Gi~~~ 356 (495)
T PTZ00314 315 SICITQEVCAVGRPQASAVYHVARYARERGVPCIADG-GIKNS 356 (495)
T ss_pred cccccchhccCCCChHHHHHHHHHHHhhcCCeEEecC-CCCCH
Confidence 10 011 000 0111233445555556666666666 44444
No 395
>cd04741 DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) class 1A FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=67.68 E-value=1.3e+02 Score=29.47 Aligned_cols=190 Identities=15% Similarity=0.093 Sum_probs=105.4
Q ss_pred HHHHHhcCCcEEEEEeeeCC---------------------CCCcccHHHHHHHHHHHHHhC--CCcEEEeecCCCCC-C
Q 017200 166 AEAIASWGLDYVVITSVDRD---------------------DLADQGSGHFAQTVRKLKELK--PNMLIEALVPDFRG-N 221 (375)
Q Consensus 166 a~al~~~G~~eIvLTsgdr~---------------------dl~d~G~~~~~~lir~Ik~~~--p~i~Ie~l~pd~~g-~ 221 (375)
+..+.+.|+..|++=+.... .++..|.+.|.+.++..++.. ++..+-+.+-.... -
T Consensus 26 ~~~~~~~G~Gavv~ktit~~~~~gn~~pr~~~~~~~~~N~~G~~n~g~~~~~~~i~~~~~~~~~~~~pvivsi~g~~~~~ 105 (294)
T cd04741 26 LLELAASSTGAVTTRSSTLAGRPGNPEPRYYAFPLGSINSLGLPNLGLDYYLEYIRTISDGLPGSAKPFFISVTGSAEDI 105 (294)
T ss_pred HHHHHHcCCcEEEeCcccCCCCCCCCCCcEEecCccccccccCCCcCHHHHHHHHHHHhhhccccCCeEEEECCCCHHHH
Confidence 34444568877777665311 233346788888888776542 23322222211110 1
Q ss_pred hHHHHHHHHc---CcccccccccchHHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHH
Q 017200 222 NGCVREVAKS---GLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEK 298 (375)
Q Consensus 222 ~e~l~~L~~a---Gldv~~hnlEtv~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~tkt~imvGlGET~ee~~etl~~ 298 (375)
.+.++.+.+. |.|.+..|+-.-+- ..-+....+.+...++++.+++....=+.+|... +.+.+++.+.++.
T Consensus 106 ~~~~~~~~~~~~~~ad~ielN~sCPn~--~~~~~~~~~~~~~~~i~~~v~~~~~iPv~vKl~p----~~~~~~~~~~a~~ 179 (294)
T cd04741 106 AAMYKKIAAHQKQFPLAMELNLSCPNV--PGKPPPAYDFDATLEYLTAVKAAYSIPVGVKTPP----YTDPAQFDTLAEA 179 (294)
T ss_pred HHHHHHHHhhccccccEEEEECCCCCC--CCcccccCCHHHHHHHHHHHHHhcCCCEEEEeCC----CCCHHHHHHHHHH
Confidence 2344555554 58888887654221 0111123467888899999988531113344443 3477788889999
Q ss_pred HHHc--CCcEEeeecCCCCC-----CCCCCcc----c-------cCCHHHHHHHHHHHHHhh--hhhhccchhhhhhcch
Q 017200 299 VRAA--GVDVMTFGQYMRPS-----KRHMPVS----E-------YITPEAFERYRALGMEMG--FRYVASGPMVRSSYKV 358 (375)
Q Consensus 299 Lrel--gvd~v~i~qYl~P~-----~~~~~v~----~-------~v~pe~~~~l~~~a~~~g--f~~~~sgp~vrssy~a 358 (375)
+.+. |++.|++.+=+-+. .+..++. . .+.|...+.++++....+ +...++| -|.|...|
T Consensus 180 l~~~~~G~~gi~~~Nt~~~~~~id~~~~~~~~~~~~~~gG~SG~~i~~~al~~v~~~~~~~~~~ipIig~G-GI~s~~da 258 (294)
T cd04741 180 LNAFACPISFITATNTLGNGLVLDPERETVVLKPKTGFGGLAGAYLHPLALGNVRTFRRLLPSEIQIIGVG-GVLDGRGA 258 (294)
T ss_pred HhccccCCcEEEEEccCCccccccCCCCCcccCCCCCCCCcCchhhHHHHHHHHHHHHHhcCCCCCEEEeC-CCCCHHHH
Confidence 9998 89988865433110 0111111 0 124555666677777764 7777777 67666666
Q ss_pred hHHH
Q 017200 359 VGWC 362 (375)
Q Consensus 359 ~~~~ 362 (375)
-|++
T Consensus 259 ~e~l 262 (294)
T cd04741 259 FRMR 262 (294)
T ss_pred HHHH
Confidence 5554
No 396
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=67.66 E-value=30 Score=33.90 Aligned_cols=79 Identities=13% Similarity=0.177 Sum_probs=49.2
Q ss_pred CCcchHHHHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCCCcEEEe-ecCCCCCChHHHHHHHHcCccc
Q 017200 157 PDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEA-LVPDFRGNNGCVREVAKSGLNV 235 (375)
Q Consensus 157 ld~eEi~~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p~i~Ie~-l~pd~~g~~e~l~~L~~aGldv 235 (375)
.+++.+.+.++++.+.|++.|.|-=-..-- ....+.++++.|++..|++.|++ ++-++---......-.++|++.
T Consensus 152 ~~~~~~~~~~~~~~~~G~d~i~l~DT~G~~----~P~~v~~lv~~l~~~~~~~~i~~H~Hn~~Gla~AN~laA~~aG~~~ 227 (287)
T PRK05692 152 VPPEAVADVAERLFALGCYEISLGDTIGVG----TPGQVRAVLEAVLAEFPAERLAGHFHDTYGQALANIYASLEEGITV 227 (287)
T ss_pred CCHHHHHHHHHHHHHcCCcEEEeccccCcc----CHHHHHHHHHHHHHhCCCCeEEEEecCCCCcHHHHHHHHHHhCCCE
Confidence 468899999999999999988765111111 14568889999998887666653 2323211122223334788887
Q ss_pred cccc
Q 017200 236 FAHN 239 (375)
Q Consensus 236 ~~hn 239 (375)
+.-.
T Consensus 228 id~s 231 (287)
T PRK05692 228 FDAS 231 (287)
T ss_pred EEEE
Confidence 6543
No 397
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=67.57 E-value=29 Score=33.69 Aligned_cols=78 Identities=13% Similarity=0.147 Sum_probs=50.7
Q ss_pred CCcchHHHHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCCCcEEEe-ecCCCCCChHHHHHHHHcCccc
Q 017200 157 PDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEA-LVPDFRGNNGCVREVAKSGLNV 235 (375)
Q Consensus 157 ld~eEi~~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p~i~Ie~-l~pd~~g~~e~l~~L~~aGldv 235 (375)
.+++.+++.++++.+.|++.|.|-=-..-- -...+.++++.|++..|++.|++ .+-++.--......-.++|++.
T Consensus 146 ~~~~~~~~~~~~~~~~Ga~~i~l~DT~G~~----~P~~v~~lv~~l~~~~~~~~i~~H~Hnd~GlA~AN~laA~~aGa~~ 221 (274)
T cd07938 146 VPPERVAEVAERLLDLGCDEISLGDTIGVA----TPAQVRRLLEAVLERFPDEKLALHFHDTRGQALANILAALEAGVRR 221 (274)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEECCCCCcc----CHHHHHHHHHHHHHHCCCCeEEEEECCCCChHHHHHHHHHHhCCCE
Confidence 468899999999999999988765211111 14568899999999888776664 3333311122233345788887
Q ss_pred ccc
Q 017200 236 FAH 238 (375)
Q Consensus 236 ~~h 238 (375)
+.-
T Consensus 222 id~ 224 (274)
T cd07938 222 FDS 224 (274)
T ss_pred EEE
Confidence 653
No 398
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=67.16 E-value=55 Score=28.61 Aligned_cols=97 Identities=18% Similarity=0.174 Sum_probs=0.0
Q ss_pred HHHHHHHcCcccccccccchHHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcC
Q 017200 224 CVREVAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAG 303 (375)
Q Consensus 224 ~l~~L~~aGldv~~hnlEtv~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~tkt~imvGlGET~ee~~etl~~Lrelg 303 (375)
....|.++|.+++..+....++ ++++.|++..++ +..-|.+| |.+.+.+.++++.|++.+
T Consensus 21 v~~~l~~~GfeVi~LG~~v~~e----------------~~v~aa~~~~ad-iVglS~l~---~~~~~~~~~~~~~l~~~g 80 (134)
T TIGR01501 21 LDHAFTNAGFNVVNLGVLSPQE----------------EFIKAAIETKAD-AILVSSLY---GHGEIDCKGLRQKCDEAG 80 (134)
T ss_pred HHHHHHHCCCEEEECCCCCCHH----------------HHHHHHHHcCCC-EEEEeccc---ccCHHHHHHHHHHHHHCC
Q ss_pred CcEEeeecCCCCCCCCCCccccCCHHHHHHHHHHHHHhhhhhhccc
Q 017200 304 VDVMTFGQYMRPSKRHMPVSEYITPEAFERYRALGMEMGFRYVASG 349 (375)
Q Consensus 304 vd~v~i~qYl~P~~~~~~v~~~v~pe~~~~l~~~a~~~gf~~~~sg 349 (375)
...+.+. --+.++.. ++.++..++..+++||..+..+
T Consensus 81 l~~~~vi------vGG~~vi~---~~d~~~~~~~l~~~Gv~~vF~p 117 (134)
T TIGR01501 81 LEGILLY------VGGNLVVG---KQDFPDVEKRFKEMGFDRVFAP 117 (134)
T ss_pred CCCCEEE------ecCCcCcC---hhhhHHHHHHHHHcCCCEEECc
No 399
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=67.08 E-value=65 Score=31.96 Aligned_cols=52 Identities=17% Similarity=0.234 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHhCCCCceE--EEeEE--EecCCCHHHHHHHHHHHHHcCCcEEeee
Q 017200 259 QSLDVLMMAKDYVPAGTLT--KTSIM--LGCGETPDQVVSTMEKVRAAGVDVMTFG 310 (375)
Q Consensus 259 ~~l~vl~~ak~~~p~Gl~t--kt~im--vGlGET~ee~~etl~~Lrelgvd~v~i~ 310 (375)
..+++++.+++..+.++.+ +.+.. .--|.+.+|.++.++.|.+.++|++.+.
T Consensus 206 f~~eiv~aIR~~vG~d~~v~vri~~~~~~~~g~~~~e~~~ia~~Le~~gvd~iev~ 261 (336)
T cd02932 206 FLLEVVDAVRAVWPEDKPLFVRISATDWVEGGWDLEDSVELAKALKELGVDLIDVS 261 (336)
T ss_pred HHHHHHHHHHHHcCCCceEEEEEcccccCCCCCCHHHHHHHHHHHHHcCCCEEEEC
Confidence 3467888888876543433 32221 1126689999999999999999999874
No 400
>PRK08999 hypothetical protein; Provisional
Probab=67.07 E-value=88 Score=30.39 Aligned_cols=31 Identities=10% Similarity=0.192 Sum_probs=23.1
Q ss_pred eEEEec-CCCHHHHHHHHHHHHHcCCcEEeeecCCC
Q 017200 280 SIMLGC-GETPDQVVSTMEKVRAAGVDVMTFGQYMR 314 (375)
Q Consensus 280 ~imvGl-GET~ee~~etl~~Lrelgvd~v~i~qYl~ 314 (375)
+.++|. ..|.+|+.+ ..+.++|++.|++++.
T Consensus 226 ~~~ig~S~h~~~~~~~----a~~~~~dyi~~gpvf~ 257 (312)
T PRK08999 226 GRWVAASCHDAEELAR----AQRLGVDFAVLSPVQP 257 (312)
T ss_pred CCEEEEecCCHHHHHH----HHhcCCCEEEECCCcC
Confidence 457787 788887643 3467999999998873
No 401
>COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion]
Probab=66.84 E-value=43 Score=34.77 Aligned_cols=80 Identities=21% Similarity=0.273 Sum_probs=48.8
Q ss_pred CCcchHHHHHHHHHhcCCcEEEEEeeeCCCCC--cccHHHHHHHHHHHHHhCCCcEEEeecC--CCCC----ChHHH---
Q 017200 157 PDPDEPTNVAEAIASWGLDYVVITSVDRDDLA--DQGSGHFAQTVRKLKELKPNMLIEALVP--DFRG----NNGCV--- 225 (375)
Q Consensus 157 ld~eEi~~~a~al~~~G~~eIvLTsgdr~dl~--d~G~~~~~~lir~Ik~~~p~i~Ie~l~p--d~~g----~~e~l--- 225 (375)
+..++.+-+++++.+.|+-.+-+=||..-|-- -.+ +.=.+-+|.||+..|+..+..|.- +..| .++.+
T Consensus 25 mrt~DmlPi~e~lD~~G~~slE~WGGATFDaciRfLn-EDPWeRLr~lk~~~~nT~LQMLlRGQNlvGYrhyaDDvVe~F 103 (472)
T COG5016 25 MRTEDMLPIAEALDKVGYWSLEVWGGATFDACIRFLN-EDPWERLRELKKAVPNTKLQMLLRGQNLVGYRHYADDVVEKF 103 (472)
T ss_pred HhHHhhHHHHHHHHhcCeeEEEecCCccHHHHHHHhc-CCHHHHHHHHHHhCCCcHHHHHHccCccccccCCchHHHHHH
Confidence 67889999999999999988877777532210 000 012356888988888776654332 1111 34444
Q ss_pred -HHHHHcCccccc
Q 017200 226 -REVAKSGLNVFA 237 (375)
Q Consensus 226 -~~L~~aGldv~~ 237 (375)
+...+-|.|+|-
T Consensus 104 v~ka~~nGidvfR 116 (472)
T COG5016 104 VEKAAENGIDVFR 116 (472)
T ss_pred HHHHHhcCCcEEE
Confidence 444556777664
No 402
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=66.58 E-value=25 Score=32.55 Aligned_cols=73 Identities=15% Similarity=0.253 Sum_probs=48.6
Q ss_pred cchHHHHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCCCcEEEeecCCCCCChHHHHHHHHcC-ccccc
Q 017200 159 PDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSG-LNVFA 237 (375)
Q Consensus 159 ~eEi~~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aG-ldv~~ 237 (375)
..++.+.++++.+.|++++.+|+.+++.-. .|.+ .++++++++..+ +.+-+ .++.. +.+.++.+.+.| ++.+-
T Consensus 145 ~~~~~e~~~~~~~~g~~~ii~~~~~~~g~~-~G~d--~~~i~~l~~~~~-ipvia-~GGi~-~~~di~~~~~~g~~~gv~ 218 (233)
T PRK00748 145 GVTAEDLAKRFEDAGVKAIIYTDISRDGTL-SGPN--VEATRELAAAVP-IPVIA-SGGVS-SLDDIKALKGLGAVEGVI 218 (233)
T ss_pred CCCHHHHHHHHHhcCCCEEEEeeecCcCCc-CCCC--HHHHHHHHHhCC-CCEEE-eCCCC-CHHHHHHHHHcCCccEEE
Confidence 346677888889999999999998875432 2332 567778877654 33322 22222 778888888877 77543
No 403
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=66.55 E-value=1.1e+02 Score=28.27 Aligned_cols=122 Identities=18% Similarity=0.216 Sum_probs=71.4
Q ss_pred HHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCCCcEEEeecCCCCCChHHHHHHHHcCccccccc---c
Q 017200 164 NVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHN---I 240 (375)
Q Consensus 164 ~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGldv~~hn---l 240 (375)
+.++.+.+.|++.|++-+...+ .++ .....++++.+++. +++.+-. +-. +.+.+..+.++|+|.+..+ .
T Consensus 79 ~~v~~a~~aGad~I~~d~~~~~-~p~--~~~~~~~i~~~~~~-~~i~vi~--~v~--t~ee~~~a~~~G~d~i~~~~~g~ 150 (221)
T PRK01130 79 KEVDALAAAGADIIALDATLRP-RPD--GETLAELVKRIKEY-PGQLLMA--DCS--TLEEGLAAQKLGFDFIGTTLSGY 150 (221)
T ss_pred HHHHHHHHcCCCEEEEeCCCCC-CCC--CCCHHHHHHHHHhC-CCCeEEE--eCC--CHHHHHHHHHcCCCEEEcCCcee
Confidence 4577888999996665443321 111 02356788888775 5554432 222 5677889999999987442 2
Q ss_pred cchHHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecCC-CHHHHHHHHHHHHHcCCcEEeeecC
Q 017200 241 ETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGE-TPDQVVSTMEKVRAAGVDVMTFGQY 312 (375)
Q Consensus 241 Etv~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~tkt~imvGlGE-T~ee~~etl~~Lrelgvd~v~i~qY 312 (375)
+.... . .....++.++.+++.. ..-++.+.|= |.+++.+. .+.|.|.+-+|..
T Consensus 151 t~~~~-----~----~~~~~~~~i~~i~~~~------~iPvia~GGI~t~~~~~~~----l~~GadgV~iGsa 204 (221)
T PRK01130 151 TEETK-----K----PEEPDFALLKELLKAV------GCPVIAEGRINTPEQAKKA----LELGAHAVVVGGA 204 (221)
T ss_pred ecCCC-----C----CCCcCHHHHHHHHHhC------CCCEEEECCCCCHHHHHHH----HHCCCCEEEEchH
Confidence 21110 0 1111245667776632 3447777766 67666554 4578999999844
No 404
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=66.47 E-value=32 Score=31.99 Aligned_cols=78 Identities=22% Similarity=0.250 Sum_probs=49.4
Q ss_pred CCcchHHHHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCCCcEEEe-ecCCCCCChHHHHHHHHcCccc
Q 017200 157 PDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEA-LVPDFRGNNGCVREVAKSGLNV 235 (375)
Q Consensus 157 ld~eEi~~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p~i~Ie~-l~pd~~g~~e~l~~L~~aGldv 235 (375)
.+++++.+.++.+.+.|++.|.|-=-..- .....+.++++.|++..|.+.|++ .+-|+.--......-.++|++.
T Consensus 134 ~~~~~~~~~~~~~~~~g~~~i~l~Dt~G~----~~P~~v~~lv~~~~~~~~~~~l~~H~Hnd~Gla~An~laA~~aGa~~ 209 (237)
T PF00682_consen 134 TDPEELLELAEALAEAGADIIYLADTVGI----MTPEDVAELVRALREALPDIPLGFHAHNDLGLAVANALAALEAGADR 209 (237)
T ss_dssp SSHHHHHHHHHHHHHHT-SEEEEEETTS-----S-HHHHHHHHHHHHHHSTTSEEEEEEBBTTS-HHHHHHHHHHTT-SE
T ss_pred ccHHHHHHHHHHHHHcCCeEEEeeCccCC----cCHHHHHHHHHHHHHhccCCeEEEEecCCccchhHHHHHHHHcCCCE
Confidence 46899999999999999999876511111 114578899999999998777764 3333310122233445689887
Q ss_pred ccc
Q 017200 236 FAH 238 (375)
Q Consensus 236 ~~h 238 (375)
+..
T Consensus 210 id~ 212 (237)
T PF00682_consen 210 IDG 212 (237)
T ss_dssp EEE
T ss_pred EEc
Confidence 644
No 405
>cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of in
Probab=66.31 E-value=37 Score=32.86 Aligned_cols=76 Identities=17% Similarity=0.273 Sum_probs=47.8
Q ss_pred CcchHHHHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCCCcEEEe-ecCCCC-CChHHHHHHHHcCccc
Q 017200 158 DPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEA-LVPDFR-GNNGCVREVAKSGLNV 235 (375)
Q Consensus 158 d~eEi~~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p~i~Ie~-l~pd~~-g~~e~l~~L~~aGldv 235 (375)
+++.+.+.++++.+.|++.|.|-=-..-.. ...+.++++.+++..|++.|++ ++-|+. +....+.- .++|++.
T Consensus 149 ~~~~~~~~~~~~~~~g~~~i~l~DT~G~~~----P~~v~~lv~~l~~~~~~~~l~~H~Hnd~Gla~An~laA-~~aGa~~ 223 (273)
T cd07941 149 NPEYALATLKAAAEAGADWLVLCDTNGGTL----PHEIAEIVKEVRERLPGVPLGIHAHNDSGLAVANSLAA-VEAGATQ 223 (273)
T ss_pred CHHHHHHHHHHHHhCCCCEEEEecCCCCCC----HHHHHHHHHHHHHhCCCCeeEEEecCCCCcHHHHHHHH-HHcCCCE
Confidence 577888889999999998876541111111 3567888999988888777664 333331 11333333 3678887
Q ss_pred ccc
Q 017200 236 FAH 238 (375)
Q Consensus 236 ~~h 238 (375)
+..
T Consensus 224 id~ 226 (273)
T cd07941 224 VQG 226 (273)
T ss_pred EEE
Confidence 654
No 406
>cd04823 ALAD_PBGS_aspartate_rich Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. All of PBGS_aspartate_rich contain an aspartate rich metal binding site with the general sequence DXALDX(Y/F)X3G(H/Q)DG. They also contain an allosteric magnesiu
Probab=66.23 E-value=17 Score=36.29 Aligned_cols=55 Identities=25% Similarity=0.349 Sum_probs=43.0
Q ss_pred CCcchHHHHHHHHHhcCCcEEEEEeeeCCCCCcc-c------HHHHHHHHHHHHHhCCCcEE
Q 017200 157 PDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQ-G------SGHFAQTVRKLKELKPNMLI 211 (375)
Q Consensus 157 ld~eEi~~~a~al~~~G~~eIvLTsgdr~dl~d~-G------~~~~~~lir~Ik~~~p~i~I 211 (375)
++.+.+.++++.+.+.|++-|.|=|+..++..|. | -.-+...|+.||+.+|++.|
T Consensus 51 ~s~d~l~~~v~~~~~~Gi~~v~lFgv~~~~~KD~~gs~A~~~~g~v~~air~iK~~~p~l~v 112 (320)
T cd04823 51 LSIDELLKEAEEAVDLGIPAVALFPVTPPELKSEDGSEAYNPDNLVCRAIRAIKEAFPELGI 112 (320)
T ss_pred eCHHHHHHHHHHHHHcCCCEEEEecCCCcccCCcccccccCCCChHHHHHHHHHHhCCCcEE
Confidence 7889999999999999999999999843222221 1 12467899999999999765
No 407
>PRK12857 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=66.23 E-value=1.4e+02 Score=29.40 Aligned_cols=165 Identities=16% Similarity=0.192 Sum_probs=97.1
Q ss_pred CCcchHHHHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCCCcEEEeecCCCCCChHHHHHHHHcCcccc
Q 017200 157 PDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVF 236 (375)
Q Consensus 157 ld~eEi~~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGldv~ 236 (375)
.+.+.+...++++.+.+.--|+-++...-++ .|.+.+..+++.+.+.. .+.|. +.-|...+.|.+..-.++|-+++
T Consensus 26 ~n~e~~~avi~AAee~~sPvIlq~~~~~~~~--~g~~~~~~~~~~~A~~~-~VPVa-lHLDH~~~~e~i~~ai~~GftSV 101 (284)
T PRK12857 26 NNMEIVQAIVAAAEAEKSPVIIQASQGAIKY--AGIEYISAMVRTAAEKA-SVPVA-LHLDHGTDFEQVMKCIRNGFTSV 101 (284)
T ss_pred CCHHHHHHHHHHHHHhCCCEEEEechhHhhh--CCHHHHHHHHHHHHHHC-CCCEE-EECCCCCCHHHHHHHHHcCCCeE
Confidence 3467777888888888877666665543333 34777888888887654 23332 55576657788888889886543
Q ss_pred cccccchH-HHHHHhcCCCCCHHHHHHHHHHHHHhCCCCceEE--EeEEEec-CC----CHH----HHHHHHHHHHHcCC
Q 017200 237 AHNIETVE-ELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTK--TSIMLGC-GE----TPD----QVVSTMEKVRAAGV 304 (375)
Q Consensus 237 ~hnlEtv~-rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~tk--t~imvGl-GE----T~e----e~~etl~~Lrelgv 304 (375)
.++.+. .+ .-+.+...++++.||. .|+.+- -|-|-|- +. +.+ +..+..+++++.|+
T Consensus 102 --M~DgS~lp~-------eeNi~~T~~vv~~Ah~---~gvsVEaElG~vgg~e~~~~~~~~~~~~T~pe~a~~Fv~~Tgv 169 (284)
T PRK12857 102 --MIDGSKLPL-------EENIALTKKVVEIAHA---VGVSVEAELGKIGGTEDDITVDEREAAMTDPEEARRFVEETGV 169 (284)
T ss_pred --EEeCCCCCH-------HHHHHHHHHHHHHHHH---cCCEEEEEeeecCCccCCCCcccchhhcCCHHHHHHHHHHHCC
Confidence 345443 11 1234455678888887 455443 3333332 11 111 45678889999999
Q ss_pred cEEeeecCCCCCCCCCCccccCCH-HHHHHHHHHHHHhhh
Q 017200 305 DVMTFGQYMRPSKRHMPVSEYITP-EAFERYRALGMEMGF 343 (375)
Q Consensus 305 d~v~i~qYl~P~~~~~~v~~~v~p-e~~~~l~~~a~~~gf 343 (375)
|.+-+. + ++-|-.-.. .| =.|++|+++....+.
T Consensus 170 D~LAva-i---Gt~HG~y~~--~p~Ld~~~L~~i~~~~~v 203 (284)
T PRK12857 170 DALAIA-I---GTAHGPYKG--EPKLDFDRLAKIKELVNI 203 (284)
T ss_pred CEEeec-c---CccccccCC--CCcCCHHHHHHHHHHhCC
Confidence 987663 1 122211111 11 136677777666655
No 408
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=66.21 E-value=52 Score=32.66 Aligned_cols=75 Identities=15% Similarity=0.186 Sum_probs=49.3
Q ss_pred chHHHHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCCCcEEEeecCCCCCChHHHHHHHH-cCcccccc
Q 017200 160 DEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAK-SGLNVFAH 238 (375)
Q Consensus 160 eEi~~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~-aGldv~~h 238 (375)
++..+.++.+.+.|++.|.+.+.+++....+.++ .+.+++|++.. ++.|- ..++.. +.+.++.+.+ .|+|.+-.
T Consensus 149 ~~~~~~a~~le~~G~d~i~vh~rt~~~~~~G~a~--~~~i~~ik~~~-~iPVI-~nGgI~-s~~da~~~l~~~gadgVmi 223 (321)
T PRK10415 149 RNCVEIAQLAEDCGIQALTIHGRTRACLFNGEAE--YDSIRAVKQKV-SIPVI-ANGDIT-DPLKARAVLDYTGADALMI 223 (321)
T ss_pred chHHHHHHHHHHhCCCEEEEecCccccccCCCcC--hHHHHHHHHhc-CCcEE-EeCCCC-CHHHHHHHHhccCCCEEEE
Confidence 4678888899999999999999876543222122 36788888754 23332 234443 5666666665 68987755
Q ss_pred c
Q 017200 239 N 239 (375)
Q Consensus 239 n 239 (375)
+
T Consensus 224 G 224 (321)
T PRK10415 224 G 224 (321)
T ss_pred C
Confidence 4
No 409
>TIGR01919 hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase/N-(5'phosphoribosyl)anthranilate isomerase. This model represents a bifunctional protein posessing both hisA (1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase) and trpF (N-(5'phosphoribosyl)anthranilate isomerase) activities. Thus, it is involved in both the histidine and tryptophan biosynthetic pathways. Enzymes with this property have been described only in the Actinobacteria (High-GC gram-positive). The enzyme is closely related to the monofunctional HisA proteins (TIGR00007) and in Actinobacteria, the classical monofunctional TrpF is generally absent.
Probab=65.97 E-value=1.3e+02 Score=28.79 Aligned_cols=162 Identities=10% Similarity=0.045 Sum_probs=0.0
Q ss_pred hHHHHHHHHHhcCCcEEEEEeeeCCCCCcc-cHHHHHHHHHHHHHhCCCcEEEeecCCCCCChHHHHHHHHcCccccccc
Q 017200 161 EPTNVAEAIASWGLDYVVITSVDRDDLADQ-GSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHN 239 (375)
Q Consensus 161 Ei~~~a~al~~~G~~eIvLTsgdr~dl~d~-G~~~~~~lir~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGldv~~hn 239 (375)
.|+..++...+.|.+.++|. |+... |...-.++|++|.+..+ +.+.+=-+-- +.+.++.+.+.|++.+-.+
T Consensus 32 ~p~~~a~~~~~~g~~~lhiv-----DLd~a~g~~~n~~~i~~i~~~~~-~~v~vgGGIr--s~e~~~~~l~~Ga~~vvig 103 (243)
T TIGR01919 32 SLESAAKWWEQGGAEWIHLV-----DLDAAFGGGNNEMMLEEVVKLLV-VVEELSGGRR--DDSSLRAALTGGRARVNGG 103 (243)
T ss_pred CHHHHHHHHHhCCCeEEEEE-----ECCCCCCCcchHHHHHHHHHHCC-CCEEEcCCCC--CHHHHHHHHHcCCCEEEEC
Q ss_pred ccchHHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEE------E----ecCCCHHHHHHHHHHHHHcCCcEEee
Q 017200 240 IETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIM------L----GCGETPDQVVSTMEKVRAAGVDVMTF 309 (375)
Q Consensus 240 lEtv~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~tkt~im------v----GlGET~ee~~etl~~Lrelgvd~v~i 309 (375)
=++.+ .| +.++.+.+.++.-+.+..++- . |.-||..+..+.++.+.+.|+..+-+
T Consensus 104 T~a~~------~p---------~~~~~~~~~~g~~ivvslD~k~~g~~~~v~~~Gw~~~~~~~~~~~~~~~~~g~~~ii~ 168 (243)
T TIGR01919 104 TAALE------NP---------WWAAAVIRYGGDIVAVGLDVLEDGEWHTLGNRGWSDGGGDLEVLERLLDSGGCSRVVV 168 (243)
T ss_pred chhhC------CH---------HHHHHHHHHccccEEEEEEEecCCceEEEECCCeecCCCcHHHHHHHHHhCCCCEEEE
Q ss_pred ecCCCCCCCCCCccccCCHHHHHHHHHHHHHhhhhhhccchhhhh
Q 017200 310 GQYMRPSKRHMPVSEYITPEAFERYRALGMEMGFRYVASGPMVRS 354 (375)
Q Consensus 310 ~qYl~P~~~~~~v~~~v~pe~~~~l~~~a~~~gf~~~~sgp~vrs 354 (375)
. ..........--++.+++++..-.....+|| -|||
T Consensus 169 t--------dI~~dGt~~G~d~~l~~~l~~~~~~pviasG-Gv~s 204 (243)
T TIGR01919 169 T--------DSKKDGLSGGPNELLLEVVAARTDAIVAASG-GSSL 204 (243)
T ss_pred E--------ecCCcccCCCcCHHHHHHHHhhCCCCEEEEC-CcCC
No 410
>PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=65.90 E-value=1.4e+02 Score=29.35 Aligned_cols=166 Identities=14% Similarity=0.184 Sum_probs=98.5
Q ss_pred CCcchHHHHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCCCcEEEeecCCCCCChHHHHHHHHcCcccc
Q 017200 157 PDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVF 236 (375)
Q Consensus 157 ld~eEi~~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGldv~ 236 (375)
.+.+.+...++++.+.+.--|+-++...-++ .|.+.+..+++.+.+.. .+.|. +.-|...+.+.+..-.++|-+++
T Consensus 26 ~n~e~~~avi~AAee~~sPvIiq~~~~~~~~--~g~~~~~~~~~~~a~~~-~VPVa-lHLDH~~~~e~i~~ai~~GftSV 101 (284)
T PRK12737 26 HNLETLQVVVETAAELRSPVILAGTPGTFSY--AGTDYIVAIAEVAARKY-NIPLA-LHLDHHEDLDDIKKKVRAGIRSV 101 (284)
T ss_pred CCHHHHHHHHHHHHHhCCCEEEEcCccHHhh--CCHHHHHHHHHHHHHHC-CCCEE-EECCCCCCHHHHHHHHHcCCCeE
Confidence 3567788888888888887777666543333 24667888888887655 24333 55576657888988889996643
Q ss_pred cccccchH-HHHHHhcCCCCCHHHHHHHHHHHHHhCCCCceEEE--eEEEec-CC----CHH----HHHHHHHHHHHcCC
Q 017200 237 AHNIETVE-ELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKT--SIMLGC-GE----TPD----QVVSTMEKVRAAGV 304 (375)
Q Consensus 237 ~hnlEtv~-rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~tkt--~imvGl-GE----T~e----e~~etl~~Lrelgv 304 (375)
.++.+. .+ ..+.+...++++.||.. |+.+-. |-|-|- ++ +.+ +-.+..+++++.|+
T Consensus 102 --MiDgS~lp~-------eeNi~~T~~vv~~Ah~~---gvsVEaElG~igg~e~~~~~~~~~~~~T~peeA~~Fv~~Tgv 169 (284)
T PRK12737 102 --MIDGSHLSF-------EENIAIVKEVVEFCHRY---DASVEAELGRLGGQEDDLVVDEKDAMYTNPDAAAEFVERTGI 169 (284)
T ss_pred --EecCCCCCH-------HHHHHHHHHHHHHHHHc---CCEEEEEEeeccCccCCcccccccccCCCHHHHHHHHHHhCC
Confidence 344432 11 12345566888888883 554433 333222 11 111 34678889999999
Q ss_pred cEEeeecCCCCCCCCCCccccCCH-HHHHHHHHHHHHhhhh
Q 017200 305 DVMTFGQYMRPSKRHMPVSEYITP-EAFERYRALGMEMGFR 344 (375)
Q Consensus 305 d~v~i~qYl~P~~~~~~v~~~v~p-e~~~~l~~~a~~~gf~ 344 (375)
|.+-+. + ++-|-.-.. .| =.|++|+++....+.-
T Consensus 170 D~LAva-i---Gt~HG~y~~--~p~Ld~~~L~~I~~~~~iP 204 (284)
T PRK12737 170 DSLAVA-I---GTAHGLYKG--EPKLDFERLAEIREKVSIP 204 (284)
T ss_pred CEEeec-c---CccccccCC--CCcCCHHHHHHHHHHhCCC
Confidence 986653 1 122211111 12 1477777777766653
No 411
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=65.84 E-value=23 Score=37.58 Aligned_cols=132 Identities=16% Similarity=0.205 Sum_probs=76.6
Q ss_pred chHHHHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCCCcEEEeecCCCCCChHHHHHHHHcCccccccc
Q 017200 160 DEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHN 239 (375)
Q Consensus 160 eEi~~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGldv~~hn 239 (375)
.+-.+.++++.+.|++-|+|=..+ +-..+..++|+.||+.+|++.|- .++.. +.+....+.++|+|.+-.+
T Consensus 247 ~~~~~r~~~l~~ag~d~i~iD~~~------g~~~~~~~~i~~ik~~~p~~~vi--~g~v~-t~e~a~~a~~aGaD~i~vg 317 (505)
T PLN02274 247 ESDKERLEHLVKAGVDVVVLDSSQ------GDSIYQLEMIKYIKKTYPELDVI--GGNVV-TMYQAQNLIQAGVDGLRVG 317 (505)
T ss_pred ccHHHHHHHHHHcCCCEEEEeCCC------CCcHHHHHHHHHHHHhCCCCcEE--EecCC-CHHHHHHHHHcCcCEEEEC
Confidence 355688999999999999875532 22445678999999999876542 12221 6788899999999988332
Q ss_pred -----ccchHHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcCCcEEeeecCC
Q 017200 240 -----IETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQYM 313 (375)
Q Consensus 240 -----lEtv~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~tkt~imvGlGET~ee~~etl~~Lrelgvd~v~i~qYl 313 (375)
+.+.+.... +..+.. ..+..+..+.+.. ++++ |.=|=--+..|+...| .+|.+.|-+|..+
T Consensus 318 ~g~G~~~~t~~~~~-~g~~~~---~~i~~~~~~~~~~--~vpV---IadGGI~~~~di~kAl----a~GA~~V~vGs~~ 383 (505)
T PLN02274 318 MGSGSICTTQEVCA-VGRGQA---TAVYKVASIAAQH--GVPV---IADGGISNSGHIVKAL----TLGASTVMMGSFL 383 (505)
T ss_pred CCCCccccCccccc-cCCCcc---cHHHHHHHHHHhc--CCeE---EEeCCCCCHHHHHHHH----HcCCCEEEEchhh
Confidence 222211100 110111 1222233333321 2322 1112235777777666 4788888888665
No 412
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=65.82 E-value=50 Score=31.43 Aligned_cols=73 Identities=15% Similarity=0.160 Sum_probs=49.1
Q ss_pred CcchHHHHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCCCcEEEeecCCCCCChHHHHHHHHcC-cccc
Q 017200 158 DPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSG-LNVF 236 (375)
Q Consensus 158 d~eEi~~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aG-ldv~ 236 (375)
+..++...++.+.+.|++.|++|+.+++... .|. ..++++++++.. ++.|-+ .+... +.+.+..+.+.| +|.+
T Consensus 153 ~~~~~~~~~~~l~~~G~~~iivt~i~~~g~~-~g~--~~~~~~~i~~~~-~ipvia-~GGi~-s~~di~~~~~~g~~dgv 226 (254)
T TIGR00735 153 TGLDAVEWAKEVEKLGAGEILLTSMDKDGTK-SGY--DLELTKAVSEAV-KIPVIA-SGGAG-KPEHFYEAFTKGKADAA 226 (254)
T ss_pred CCCCHHHHHHHHHHcCCCEEEEeCcCcccCC-CCC--CHHHHHHHHHhC-CCCEEE-eCCCC-CHHHHHHHHHcCCccee
Confidence 3567788899999999999999998764332 232 356778887764 344332 23332 677888888776 7764
No 413
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=65.81 E-value=82 Score=30.78 Aligned_cols=141 Identities=13% Similarity=0.154 Sum_probs=82.2
Q ss_pred CcchHHHHHHHHHhcCCcEEEEEee--eCCCCCcc------cHHHHHHHHHHHHHhC--CCcEEEeecCCCCCChHHHHH
Q 017200 158 DPDEPTNVAEAIASWGLDYVVITSV--DRDDLADQ------GSGHFAQTVRKLKELK--PNMLIEALVPDFRGNNGCVRE 227 (375)
Q Consensus 158 d~eEi~~~a~al~~~G~~eIvLTsg--dr~dl~d~------G~~~~~~lir~Ik~~~--p~i~Ie~l~pd~~g~~e~l~~ 227 (375)
++++..+.|+.+.+.|++.|-|=-+ +....... ..+.+.++++.+++.. | +.+. +.|++....+.++.
T Consensus 111 ~~~~~~~~a~~~~~~gad~ielN~sCP~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~P-v~vK-l~~~~~~~~~~a~~ 188 (299)
T cd02940 111 NKEDWTELAKLVEEAGADALELNFSCPHGMPERGMGAAVGQDPELVEEICRWVREAVKIP-VIAK-LTPNITDIREIARA 188 (299)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEECCCCCCCCCCCCchhhccCHHHHHHHHHHHHHhcCCC-eEEE-CCCCchhHHHHHHH
Confidence 4688999999998889988877433 11111111 1467888999998754 3 4555 45665323566777
Q ss_pred HHHcCcccccc-c-------c--cchH-H--HH-----HHhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEec--CC
Q 017200 228 VAKSGLNVFAH-N-------I--ETVE-E--LQ-----SAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGC--GE 287 (375)
Q Consensus 228 L~~aGldv~~h-n-------l--Etv~-r--l~-----~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~tkt~imvGl--GE 287 (375)
+.++|+|.+.. | + ++.. . +. .-+. ..+.....++.+..+++..+..+. |+|- -.
T Consensus 189 ~~~~Gadgi~~~Nt~~~~~~id~~~~~~~~~~~~~~~~gg~s-G~a~~p~~l~~v~~~~~~~~~~ip-----Iig~GGI~ 262 (299)
T cd02940 189 AKEGGADGVSAINTVNSLMGVDLDGTPPAPGVEGKTTYGGYS-GPAVKPIALRAVSQIARAPEPGLP-----ISGIGGIE 262 (299)
T ss_pred HHHcCCCEEEEecccccccccccccCCccccccCCCCcCccc-CCCcchHHHHHHHHHHHhcCCCCc-----EEEECCCC
Confidence 88999996631 1 1 2211 0 00 0111 123345568888888886521132 2222 36
Q ss_pred CHHHHHHHHHHHHHcCCcEEeee
Q 017200 288 TPDQVVSTMEKVRAAGVDVMTFG 310 (375)
Q Consensus 288 T~ee~~etl~~Lrelgvd~v~i~ 310 (375)
|.+|+++.|. .|.+.|-++
T Consensus 263 ~~~da~~~l~----aGA~~V~i~ 281 (299)
T cd02940 263 SWEDAAEFLL----LGASVVQVC 281 (299)
T ss_pred CHHHHHHHHH----cCCChheEc
Confidence 8888888762 788777664
No 414
>TIGR00875 fsa_talC_mipB fructose-6-phosphate aldolase, TalC/MipB family. This model represents a family that includes the E. coli transaldolase homologs TalC and MipB, both shown to be fructose-6-phosphate aldolases rather than transaldolases as previously thought. It is related to but distinct from the transaldolase family of E. coli TalA and TalB. The member from Bacillus subtilis becomes phosphorylated during early stationary phase but not during exponential growth.
Probab=65.46 E-value=71 Score=30.03 Aligned_cols=76 Identities=17% Similarity=0.182 Sum_probs=46.7
Q ss_pred HHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCCCcEEEeecCCCCCChHHHHHHHHcCcccccccccchHHHHH
Q 017200 169 IASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETVEELQS 248 (375)
Q Consensus 169 l~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGldv~~hnlEtv~rl~~ 248 (375)
....|..+|-.=-|--+|..+.|..-+.++.+.++...+.+. ++...|+ +.+.+..+..+|+|.+... .++++
T Consensus 118 Aa~aGa~yispyvgRi~d~g~dg~~~v~~~~~~~~~~~~~tk--IlaAS~r-~~~~v~~~~~~G~d~vTip----~~vl~ 190 (213)
T TIGR00875 118 AAKAGATYVSPFVGRLDDIGGDGMKLIEEVKTIFENHAPDTE--VIAASVR-HPRHVLEAALIGADIATMP----LDVMQ 190 (213)
T ss_pred HHHcCCCEEEeecchHHHcCCCHHHHHHHHHHHHHHcCCCCE--EEEeccC-CHHHHHHHHHcCCCEEEcC----HHHHH
Confidence 344577776555454344444456656666666655434443 4555565 6778888888999988653 36666
Q ss_pred Hhc
Q 017200 249 AVR 251 (375)
Q Consensus 249 ~mr 251 (375)
++.
T Consensus 191 ~l~ 193 (213)
T TIGR00875 191 QLF 193 (213)
T ss_pred HHH
Confidence 665
No 415
>TIGR00284 dihydropteroate synthase-related protein. This protein has been found so far only in the Archaea, and in particular in those archaea that lack a bacterial-type dihydropteroate synthase. The central region of this protein shows considerable homology to the amino-terminal half of dihydropteroate synthases, while the carboxyl-terminal region shows homology to the small, uncharacterized protein slr0651 of Synechocystis PCC6803.
Probab=65.37 E-value=1.5e+02 Score=31.66 Aligned_cols=128 Identities=14% Similarity=0.119 Sum_probs=81.4
Q ss_pred chHHHHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCCCcEEEeecCCCCCChHHHHHHHHcCccccccc
Q 017200 160 DEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHN 239 (375)
Q Consensus 160 eEi~~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGldv~~hn 239 (375)
+++++.|+...+.|.+.|-|-++-.. + +.+.+...|+.+++.. ++.|. +-.+ +.+.++.-.++|.|.++--
T Consensus 165 ~~i~~~A~~~~~~GADIIDIG~~st~--p--~~~~v~~~V~~l~~~~-~~pIS--IDT~--~~~v~eaAL~aGAdiINsV 235 (499)
T TIGR00284 165 DGIEGLAARMERDGADMVALGTGSFD--D--DPDVVKEKVKTALDAL-DSPVI--ADTP--TLDELYEALKAGASGVIMP 235 (499)
T ss_pred HHHHHHHHHHHHCCCCEEEECCCcCC--C--cHHHHHHHHHHHHhhC-CCcEE--EeCC--CHHHHHHHHHcCCCEEEEC
Confidence 88999999999999999998876421 1 2456788888887653 23332 2222 6788888888899987631
Q ss_pred -ccchHHHHHHhcC-----------CCCCHHHHHHHHHHHHHhCCCCc-eEEEeEEEecCCCHHHHHHHHHHHHH
Q 017200 240 -IETVEELQSAVRD-----------HRANFKQSLDVLMMAKDYVPAGT-LTKTSIMLGCGETPDQVVSTMEKVRA 301 (375)
Q Consensus 240 -lEtv~rl~~~mr~-----------r~~s~~~~l~vl~~ak~~~p~Gl-~tkt~imvGlGET~ee~~etl~~Lre 301 (375)
-+..+++.+-+.. ....|+...+.++.+.+ .|+ .+-.+-++|+ ...++.+++..++.
T Consensus 236 s~~~~d~~~~l~a~~g~~vVlm~~~~~~~~~~l~~~ie~a~~---~Gi~~IIlDPglg~--~~~~l~~sL~~l~~ 305 (499)
T TIGR00284 236 DVENAVELASEKKLPEDAFVVVPGNQPTNYEELAKAVKKLRT---SGYSKVAADPSLSP--PLLGLLESIIRFRR 305 (499)
T ss_pred CccchhHHHHHHHHcCCeEEEEcCCCCchHHHHHHHHHHHHH---CCCCcEEEeCCCCc--chHHHHHHHHHHHH
Confidence 1233444432210 12345666777788887 577 4444444454 44557777777764
No 416
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=65.33 E-value=1.4e+02 Score=29.03 Aligned_cols=138 Identities=17% Similarity=0.163 Sum_probs=77.2
Q ss_pred HHHHHHHhcCCcEEEEEeeeCC---------------------CCCcccHHHHHHHHHHHHHhCCCcEEEeec-CC-CCC
Q 017200 164 NVAEAIASWGLDYVVITSVDRD---------------------DLADQGSGHFAQTVRKLKELKPNMLIEALV-PD-FRG 220 (375)
Q Consensus 164 ~~a~al~~~G~~eIvLTsgdr~---------------------dl~d~G~~~~~~lir~Ik~~~p~i~Ie~l~-pd-~~g 220 (375)
+.++.+.+.|+..|++=+...+ .++..|.+.|.+.++..++.. +..+-+.+ +. ...
T Consensus 27 ~~~~~~~~~g~g~v~~kti~~~~~~g~~~pr~~~~~~~~~n~~g~~~~g~~~~~~~~~~~~~~~-~~p~i~si~g~~~~~ 105 (301)
T PRK07259 27 EYARFYDLNGLGAIVTKSTTLEPREGNPTPRIAETPGGMLNAIGLQNPGVDAFIEEELPWLEEF-DTPIIANVAGSTEEE 105 (301)
T ss_pred HHHHHhhhcCCcEEEeCCCCCCCCCCCCCCcEEecCCceeecCCCCCcCHHHHHHHHHHHHhcc-CCcEEEEeccCCHHH
Confidence 4455666788887776665311 122235666766665544332 22222221 11 000
Q ss_pred ChHHHHHHHHcC-cccccccccchH-HH-HHHhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHH
Q 017200 221 NNGCVREVAKSG-LNVFAHNIETVE-EL-QSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTME 297 (375)
Q Consensus 221 ~~e~l~~L~~aG-ldv~~hnlEtv~-rl-~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~tkt~imvGlGET~ee~~etl~ 297 (375)
-.+..+.+.++| .|.+..|+-.-. .- -.. -..+.+...++++.+++.. . + -+++=+.-+.+|..+..+
T Consensus 106 ~~~~a~~~~~aG~~D~iElN~~cP~~~~gg~~---~~~~~~~~~eiv~~vr~~~-~-~----pv~vKl~~~~~~~~~~a~ 176 (301)
T PRK07259 106 YAEVAEKLSKAPNVDAIELNISCPNVKHGGMA---FGTDPELAYEVVKAVKEVV-K-V----PVIVKLTPNVTDIVEIAK 176 (301)
T ss_pred HHHHHHHHhccCCcCEEEEECCCCCCCCCccc---cccCHHHHHHHHHHHHHhc-C-C----CEEEEcCCCchhHHHHHH
Confidence 145567778888 998877763211 00 000 1234577788888888853 1 2 223333335568899999
Q ss_pred HHHHcCCcEEeeec
Q 017200 298 KVRAAGVDVMTFGQ 311 (375)
Q Consensus 298 ~Lrelgvd~v~i~q 311 (375)
.+.+.|+|.+.+.+
T Consensus 177 ~l~~~G~d~i~~~n 190 (301)
T PRK07259 177 AAEEAGADGLSLIN 190 (301)
T ss_pred HHHHcCCCEEEEEc
Confidence 99999999887743
No 417
>TIGR02129 hisA_euk phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, eukaryotic type. This enzyme acts in the biosynthesis of histidine and has been characterized in S. cerevisiae and Arabidopsis where it complements the E. coli HisA gene. In eukaryotes the gene is known as HIS6. In bacteria, this gene is found in Fibrobacter succinogenes, presumably due to lateral gene transfer from plants in the rumen gut.
Probab=65.31 E-value=81 Score=30.61 Aligned_cols=162 Identities=12% Similarity=0.024 Sum_probs=88.9
Q ss_pred chH-HHHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCCCcEEEeecCCCCCChHHHHHHHHcCcccccc
Q 017200 160 DEP-TNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAH 238 (375)
Q Consensus 160 eEi-~~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGldv~~h 238 (375)
++| ++.|+...+.|++.++|. ||.. . =.++|+.|.+.. ++.|.+ .+.. ..+.++.+.++|++.+..
T Consensus 37 ~~pp~~~A~~~~~~Ga~~lHvV-----DLg~---~-n~~~i~~i~~~~-~~~v~v-GGGI--r~e~v~~~l~aGa~rVvI 103 (253)
T TIGR02129 37 DKPSSYYAKLYKDDGVKGCHVI-----MLGP---N-NDDAAKEALHAY-PGGLQV-GGGI--NDTNAQEWLDEGASHVIV 103 (253)
T ss_pred CCCHHHHHHHHHHcCCCEEEEE-----ECCC---C-cHHHHHHHHHhC-CCCEEE-eCCc--CHHHHHHHHHcCCCEEEE
Confidence 345 999999999999999988 4522 1 136777776643 344432 2333 349999999999998876
Q ss_pred cccchHHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEE---------E--ec-CCCHHHHH-HHHHHHHHcCCc
Q 017200 239 NIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIM---------L--GC-GETPDQVV-STMEKVRAAGVD 305 (375)
Q Consensus 239 nlEtv~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~tkt~im---------v--Gl-GET~ee~~-etl~~Lrelgvd 305 (375)
+= ..++. +..+.+.+-++.+... +.-+.+.-+.- . |- -+|.-+.. +.++.+.+. +.
T Consensus 104 GS----~av~~---~~i~~~~~~~i~~~fG---~~~IvvsiD~k~~~~g~~~V~~~GW~~~t~~~~~~e~~~~~~~~-~~ 172 (253)
T TIGR02129 104 TS----WLFTK---GKFDLKRLKEIVSLVG---KDRLIVDLSCRKTQDGRWIVAMNKWQTITDLELNAETLEELSKY-CD 172 (253)
T ss_pred Cc----HHHhC---CCCCHHHHHHHHHHhC---CCCEEEEEEEEEcCCCcEEEEECCCcccCCCChHHHHHHHHHhh-CC
Confidence 51 11110 1111222222222220 12233333322 1 22 22555666 777888777 77
Q ss_pred EEeeecCCCCCCCCCCccccCCHHHHHHHHHHHHHhhhhhhccchhhhh
Q 017200 306 VMTFGQYMRPSKRHMPVSEYITPEAFERYRALGMEMGFRYVASGPMVRS 354 (375)
Q Consensus 306 ~v~i~qYl~P~~~~~~v~~~v~pe~~~~l~~~a~~~gf~~~~sgp~vrs 354 (375)
.+-+..--+- ++. ..--++.+++++........||| -|+|
T Consensus 173 ~il~TdI~rD---Gtl-----~G~dlel~~~l~~~~~ipVIASG-Gv~s 212 (253)
T TIGR02129 173 EFLIHAADVE---GLC-----KGIDEELVSKLGEWSPIPITYAG-GAKS 212 (253)
T ss_pred EEEEeeeccc---Ccc-----ccCCHHHHHHHHhhCCCCEEEEC-CCCC
Confidence 7766422222 221 11136667777777777777777 4443
No 418
>PRK13586 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=65.22 E-value=29 Score=32.93 Aligned_cols=70 Identities=9% Similarity=0.113 Sum_probs=47.7
Q ss_pred chHHHHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCCCcEEEeecCCCCCChHHHHHHHHcCcccc
Q 017200 160 DEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVF 236 (375)
Q Consensus 160 eEi~~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGldv~ 236 (375)
-++.+.++.+.+.|+.++++|+++++--. .|.+ .++++.+.+. +.. +-+ .+.. ++.+.+..+++.|++..
T Consensus 146 ~~~~e~~~~l~~~g~~~ii~tdI~~dGt~-~G~d--~el~~~~~~~-~~~-via-sGGv-~s~~Dl~~l~~~G~~gv 215 (232)
T PRK13586 146 MEVIDGIKKVNELELLGIIFTYISNEGTT-KGID--YNVKDYARLI-RGL-KEY-AGGV-SSDADLEYLKNVGFDYI 215 (232)
T ss_pred CCHHHHHHHHHhcCCCEEEEecccccccC-cCcC--HHHHHHHHhC-CCC-EEE-ECCC-CCHHHHHHHHHCCCCEE
Confidence 35667788889999999999999886432 2332 4567777654 444 322 3433 27788889988888743
No 419
>PRK12330 oxaloacetate decarboxylase; Provisional
Probab=65.13 E-value=71 Score=34.02 Aligned_cols=81 Identities=15% Similarity=0.118 Sum_probs=53.0
Q ss_pred CCcchHHHHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCC-CcEEEe-ecCCCCCChHHHHHHHHcCcc
Q 017200 157 PDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKP-NMLIEA-LVPDFRGNNGCVREVAKSGLN 234 (375)
Q Consensus 157 ld~eEi~~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p-~i~Ie~-l~pd~~g~~e~l~~L~~aGld 234 (375)
-+++..++.|+++.+.|++.|.|-=-.. +- -.....++|+.|++..| ++.|++ .+-++.--......-.++|+|
T Consensus 152 ~t~e~~~~~a~~l~~~Gad~I~IkDtaG--ll--~P~~~~~LV~~Lk~~~~~~ipI~~H~Hnt~GlA~An~laAieAGad 227 (499)
T PRK12330 152 HTVEGFVEQAKRLLDMGADSICIKDMAA--LL--KPQPAYDIVKGIKEACGEDTRINLHCHSTTGVTLVSLMKAIEAGVD 227 (499)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEeCCCcc--CC--CHHHHHHHHHHHHHhCCCCCeEEEEeCCCCCcHHHHHHHHHHcCCC
Confidence 4789999999999999999997751111 11 13568899999999885 777664 222221013334445688999
Q ss_pred ccccccc
Q 017200 235 VFAHNIE 241 (375)
Q Consensus 235 v~~hnlE 241 (375)
++.-.+.
T Consensus 228 ~vDtai~ 234 (499)
T PRK12330 228 VVDTAIS 234 (499)
T ss_pred EEEeecc
Confidence 8765443
No 420
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=65.08 E-value=1.1e+02 Score=30.68 Aligned_cols=49 Identities=20% Similarity=0.378 Sum_probs=34.2
Q ss_pred HHHHHHHHHHhCCCCceEEEeEEEec------CCCHHHHHHHHHHHHHcC-CcEEeee
Q 017200 260 SLDVLMMAKDYVPAGTLTKTSIMLGC------GETPDQVVSTMEKVRAAG-VDVMTFG 310 (375)
Q Consensus 260 ~l~vl~~ak~~~p~Gl~tkt~imvGl------GET~ee~~etl~~Lrelg-vd~v~i~ 310 (375)
.+++++.+++..+..+.++.- +|. |.|.+|.++.++.|.+.| +|++++.
T Consensus 194 ~~eiv~~ir~~vg~~~~v~iR--l~~~~~~~~G~~~~e~~~~~~~l~~~G~vd~i~vs 249 (343)
T cd04734 194 LLEVLAAVRAAVGPDFIVGIR--ISGDEDTEGGLSPDEALEIAARLAAEGLIDYVNVS 249 (343)
T ss_pred HHHHHHHHHHHcCCCCeEEEE--eehhhccCCCCCHHHHHHHHHHHHhcCCCCEEEeC
Confidence 357778888865432332222 221 578999999999999998 8999883
No 421
>PRK10558 alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional
Probab=64.75 E-value=1.3e+02 Score=28.88 Aligned_cols=131 Identities=20% Similarity=0.252 Sum_probs=73.6
Q ss_pred HHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCCCcEEEeecCCCCCChHHHHHHHHcCcccc--ccccc
Q 017200 164 NVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVF--AHNIE 241 (375)
Q Consensus 164 ~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGldv~--~hnlE 241 (375)
..+|.+...|++.|+|=.-+.+ + | .+.+.++++.+...--...|++ |.- +...+..+.|+|.+.+ +| ++
T Consensus 31 ~~~e~~a~~G~D~v~iD~EHg~-~-~--~~~~~~~i~a~~~~g~~~lVRv--p~~--~~~~i~r~LD~Ga~giivP~-v~ 101 (256)
T PRK10558 31 ITTEVLGLAGFDWLVLDGEHAP-N-D--VSTFIPQLMALKGSASAPVVRV--PTN--EPVIIKRLLDIGFYNFLIPF-VE 101 (256)
T ss_pred HHHHHHHhcCCCEEEEccccCC-C-C--HHHHHHHHHHHhhcCCCcEEEC--CCC--CHHHHHHHhCCCCCeeeecC-cC
Confidence 3466778899999998766543 1 2 4567778887765422234443 332 5688999999999854 33 67
Q ss_pred chHHHHHHh---c--C---CCC-------CHHHHHHHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcCCcE
Q 017200 242 TVEELQSAV---R--D---HRA-------NFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDV 306 (375)
Q Consensus 242 tv~rl~~~m---r--~---r~~-------s~~~~l~vl~~ak~~~p~Gl~tkt~imvGlGET~ee~~etl~~Lrelgvd~ 306 (375)
+.++....+ + | |+. .|...-+.++.+-+ . +..-+| -||.+-+.+.=+-+.--++|.
T Consensus 102 tae~a~~~v~a~kypP~G~Rg~~~~~~~~~y~~~~~y~~~an~---~---~~vi~~---IEt~~av~ni~eI~av~gvd~ 172 (256)
T PRK10558 102 TAEEARRAVASTRYPPEGIRGVSVSHRANMFGTVPDYFAQSNK---N---ITVLVQ---IESQQGVDNVDAIAATEGVDG 172 (256)
T ss_pred CHHHHHHHHHHcCCCCCCcCCCCccccccccCChHHHHHHhcc---c---cEEEEE---ECCHHHHHHHHHHhCCCCCcE
Confidence 766444332 2 1 111 12111122222221 1 222222 499988755444443336999
Q ss_pred EeeecC
Q 017200 307 MTFGQY 312 (375)
Q Consensus 307 v~i~qY 312 (375)
+.||.+
T Consensus 173 l~iG~~ 178 (256)
T PRK10558 173 IFVGPS 178 (256)
T ss_pred EEECHH
Confidence 999855
No 422
>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene [].; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.
Probab=64.42 E-value=1.2e+02 Score=28.18 Aligned_cols=141 Identities=20% Similarity=0.297 Sum_probs=75.8
Q ss_pred HHHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCCCcEEEeec----CC---C-CCChHHHHHHHHcCcc
Q 017200 163 TNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALV----PD---F-RGNNGCVREVAKSGLN 234 (375)
Q Consensus 163 ~~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p~i~Ie~l~----pd---~-~g~~e~l~~L~~aGld 234 (375)
.+.|++....|..-|...|+ +-|++||+.. ++.|-.+. +| | ..+.+.++.|.++|.|
T Consensus 2 ~~mA~Aa~~gGA~giR~~~~--------------~dI~aik~~v-~lPIIGi~K~~y~~~~V~ITPT~~ev~~l~~aGad 66 (192)
T PF04131_consen 2 ARMAKAAEEGGAVGIRANGV--------------EDIRAIKKAV-DLPIIGIIKRDYPDSDVYITPTLKEVDALAEAGAD 66 (192)
T ss_dssp HHHHHHHHHCT-SEEEEESH--------------HHHHHHHTTB--S-EEEE-B-SBTTSS--BS-SHHHHHHHHHCT-S
T ss_pred HHHHHHHHHCCceEEEcCCH--------------HHHHHHHHhc-CCCEEEEEeccCCCCCeEECCCHHHHHHHHHcCCC
Confidence 35677888888888877654 2366677654 23222221 11 1 1147889999999999
Q ss_pred cccccccchHHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcCCcEEeeecC-C
Q 017200 235 VFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQY-M 313 (375)
Q Consensus 235 v~~hnlEtv~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~tkt~imvGlGET~ee~~etl~~Lrelgvd~v~i~qY-l 313 (375)
+++. +... +.| . +...++++.+|+ .+..+=+++ -|.||-+. ..++|+|+|.-.-+ +
T Consensus 67 IIAl--DaT~----R~R--p---~~l~~li~~i~~---~~~l~MADi-----st~ee~~~----A~~~G~D~I~TTLsGY 123 (192)
T PF04131_consen 67 IIAL--DATD----RPR--P---ETLEELIREIKE---KYQLVMADI-----STLEEAIN----AAELGFDIIGTTLSGY 123 (192)
T ss_dssp EEEE--E-SS----SS---S---S-HHHHHHHHHH---CTSEEEEE------SSHHHHHH----HHHTT-SEEE-TTTTS
T ss_pred EEEE--ecCC----CCC--C---cCHHHHHHHHHH---hCcEEeeec-----CCHHHHHH----HHHcCCCEEEcccccC
Confidence 9874 3221 122 2 455667777777 333333333 57777654 45799999865422 2
Q ss_pred CCCCCCCCccccCCHHHHHHHHHHHHHhhhhhhccc
Q 017200 314 RPSKRHMPVSEYITPEAFERYRALGMEMGFRYVASG 349 (375)
Q Consensus 314 ~P~~~~~~v~~~v~pe~~~~l~~~a~~~gf~~~~sg 349 (375)
.|..++ ..| .|+.++++... +...++-|
T Consensus 124 T~~t~~------~~p-D~~lv~~l~~~-~~pvIaEG 151 (192)
T PF04131_consen 124 TPYTKG------DGP-DFELVRELVQA-DVPVIAEG 151 (192)
T ss_dssp STTSTT------SSH-HHHHHHHHHHT-TSEEEEES
T ss_pred CCCCCC------CCC-CHHHHHHHHhC-CCcEeecC
Confidence 342223 123 57778777765 55444444
No 423
>PF06180 CbiK: Cobalt chelatase (CbiK); InterPro: IPR010388 This group, typified by Salmonella typhimurium CbiK, contains anaerobic cobalt chelatases that act in the anaerobic cobalamin biosynthesis pathway [, ]. Cobalamin (vitamin B12) can be complexed with metal via ATP-dependent reactions (aerobic pathway) (e.g., in Pseudomonas denitrificans) or via ATP-independent reactions (anaerobic pathway) (e.g., in S. typhimurium) [, ]. The corresponding cobalt chelatases are not homologous. This group belongs to the class of ATP-independent, single-subunit chelatases that also includes distantly related protoporphyrin IX (PPIX) ferrochelatase (HemH) (Class II chelatases) []. The structure of S. typhimurium CbiK shows that it has a remarkably similar topology to Bacillus subtilis ferrochelatase despite only weak sequence conservation []. Both enzymes contain a histidine residue identified as the metal ion ligand, but CbiK contains a second histidine in place of the glutamic acid residue identified as a general base in PPIX ferrochelatase []. Site-directed mutagenesis has confirmed a role for this histidine and a nearby glutamic acid in cobalt binding, modulating metal ion specificity as well as catalytic efficiency []. It should be noted that CysG and Met8p, which are multifunctional proteins associated with siroheme biosynthesis, include chelatase activity and can therefore be considered as the third class of chelatases []. As with the class II chelatases, they do not require ATP for activity. However, they are not structurally similar to HemH or CbiK, and it is likely that they have arisen by the acquisition of a chelatase function within a dehydrogenase catalytic framework [, ].; GO: 0016852 sirohydrochlorin cobaltochelatase activity; PDB: 1QGO_A 2XWP_A 2XVZ_A 2XVX_A 2XVY_A.
Probab=64.36 E-value=50 Score=32.12 Aligned_cols=132 Identities=17% Similarity=0.192 Sum_probs=70.9
Q ss_pred CcchHHHHHHHHHhc----CCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhC-CCcEEEeecCCCCCChHHHHHHHHcC
Q 017200 158 DPDEPTNVAEAIASW----GLDYVVITSVDRDDLADQGSGHFAQTVRKLKELK-PNMLIEALVPDFRGNNGCVREVAKSG 232 (375)
Q Consensus 158 d~eEi~~~a~al~~~----G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~-p~i~Ie~l~pd~~g~~e~l~~L~~aG 232 (375)
+.+++...++++.+. .-++.++-.|+..+.+. ...|..+=..+++.. |++.|..+.+.- .-.+.+..|++.|
T Consensus 120 ~~~D~~~va~aL~~~~~~~~~~~a~vlmGHGt~h~a--n~~Y~~l~~~l~~~~~~~v~vgtvEG~P-~~~~vi~~L~~~g 196 (262)
T PF06180_consen 120 SPEDYEAVAEALAEEFPKKRKDEAVVLMGHGTPHPA--NAAYSALQAMLKKHGYPNVFVGTVEGYP-SLEDVIARLKKKG 196 (262)
T ss_dssp SHHHHHHHHHHHHCCS-TT-TTEEEEEEE---SCHH--HHHHHHHHHHHHCCT-TTEEEEETTSSS-BHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHHHhccccCCCCEEEEEeCCCCCCc--cHHHHHHHHHHHhCCCCeEEEEEeCCCC-CHHHHHHHHHhcC
Confidence 477888888888753 25688888887654432 334555444555543 778888765422 1267889999998
Q ss_pred cccc---cccccchHHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHH
Q 017200 233 LNVF---AHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRA 301 (375)
Q Consensus 233 ldv~---~hnlEtv~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~tkt~imvGlGET~ee~~etl~~Lre 301 (375)
...+ |..+=.-+-..+-|.+ ..-+.|-..|+. .|+.+ +.++-||||.++=..--++.|++
T Consensus 197 ~k~V~L~PlMlVAGdHa~nDmaG--de~dSWks~L~~------~G~~v-~~~l~GLGE~~~i~~ifi~hl~~ 259 (262)
T PF06180_consen 197 IKKVHLIPLMLVAGDHAKNDMAG--DEEDSWKSRLEA------AGFEV-TCVLKGLGEYPAIQQIFIEHLKE 259 (262)
T ss_dssp -SEEEEEEESSS--HHHHCCCCS--SSTTSHHHHHHH------TT-EE-EE----GGGSHHHHHHHHHHHHH
T ss_pred CCeEEEEecccccchhhhhhhcC--CCcchHHHHHHH------CCCEE-EEEeccCcCCHHHHHHHHHHHHH
Confidence 7643 3332222444444542 122344444444 47755 55889999998766555555553
No 424
>PRK12999 pyruvate carboxylase; Reviewed
Probab=63.98 E-value=61 Score=38.00 Aligned_cols=74 Identities=19% Similarity=0.237 Sum_probs=46.0
Q ss_pred cchHHHH-HHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCCCcEEE-eecCCCC---C---C----hHHHH
Q 017200 159 PDEPTNV-AEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIE-ALVPDFR---G---N----NGCVR 226 (375)
Q Consensus 159 ~eEi~~~-a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p~i~Ie-~l~pd~~---g---~----~e~l~ 226 (375)
|+.+.+. ++.+++.|++-+.+- +.+.| .+.+...++.+++.--...+. +.++|+. . + .+..+
T Consensus 625 p~~v~~~~i~~a~~~Gid~~rif----d~lnd--~~~~~~~i~~vk~~g~~~~~~i~ytg~~~d~~~~~~~~~~~~~~a~ 698 (1146)
T PRK12999 625 PDNVVRAFVREAAAAGIDVFRIF----DSLNW--VENMRVAIDAVRETGKIAEAAICYTGDILDPARAKYDLDYYVDLAK 698 (1146)
T ss_pred CchHHHHHHHHHHHcCCCEEEEe----ccCCh--HHHHHHHHHHHHHcCCeEEEEEEEEecCCCCCCCCCCHHHHHHHHH
Confidence 5666665 888899999988876 34444 455667777777652112222 1332221 0 2 35677
Q ss_pred HHHHcCcccccc
Q 017200 227 EVAKSGLNVFAH 238 (375)
Q Consensus 227 ~L~~aGldv~~h 238 (375)
.+.++|+|++..
T Consensus 699 ~l~~~Ga~~i~i 710 (1146)
T PRK12999 699 ELEKAGAHILAI 710 (1146)
T ss_pred HHHHcCCCEEEE
Confidence 888999998755
No 425
>PRK06096 molybdenum transport protein ModD; Provisional
Probab=63.97 E-value=37 Score=33.47 Aligned_cols=66 Identities=15% Similarity=0.199 Sum_probs=47.5
Q ss_pred HHHHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCCCcEEEeecCCCCCChHHHHHHHHcCcccccc
Q 017200 162 PTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAH 238 (375)
Q Consensus 162 i~~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGldv~~h 238 (375)
-++.++++.+.|++-|.| |... .+.+.+.++.+++..|++.+++.- .. +.+.+..+...|+|++..
T Consensus 198 tleqa~ea~~agaDiI~L-----Dn~~---~e~l~~av~~~~~~~~~~~leaSG-GI--~~~ni~~yA~tGvD~Is~ 263 (284)
T PRK06096 198 TPKEAIAALRAQPDVLQL-----DKFS---PQQATEIAQIAPSLAPHCTLSLAG-GI--NLNTLKNYADCGIRLFIT 263 (284)
T ss_pred CHHHHHHHHHcCCCEEEE-----CCCC---HHHHHHHHHHhhccCCCeEEEEEC-CC--CHHHHHHHHhcCCCEEEE
Confidence 345566677889988877 2222 456777777776666788887653 33 789999999999998744
No 426
>PF04127 DFP: DNA / pantothenate metabolism flavoprotein; InterPro: IPR007085 This entry represents the C-terminal domain found in DNA/pantothenate metabolism flavoproteins, which affects synthesis of DNA and pantothenate metabolism. These proteins contain ATP, phosphopantothenate, and cysteine binding sites. The structure of this domain has been determined in human phosphopantothenoylcysteine (PPC) synthetase [] and as the PPC synthase domain (CoaB) from the Escherichia coli coenzyme A bifunctional protein CoaBC []. This domain adopts a 3-layer alpha/beta/alpha fold with mixed beta-sheets, which topologically resembles a combination of Rossmann-like and ribokinase-like folds. The structure of these proteins predicts a ping pong mechanism with initial formation of an acyladenylate intermediate, followed by release of pyrophosphate and attack by cysteine to form the final products PPC and AMP. ; PDB: 1U7W_A 1U7U_A 1U80_C 1U7Z_A 1P9O_B 2GK4_A.
Probab=63.89 E-value=11 Score=34.57 Aligned_cols=128 Identities=21% Similarity=0.318 Sum_probs=65.1
Q ss_pred hHHHHHHHHHhcCCcEEEEEeeeCCCCCcc----cHHHHHHHHHHHHHhCC--CcEEEe-ecCCCCCChHHHHHHHHcCc
Q 017200 161 EPTNVAEAIASWGLDYVVITSVDRDDLADQ----GSGHFAQTVRKLKELKP--NMLIEA-LVPDFRGNNGCVREVAKSGL 233 (375)
Q Consensus 161 Ei~~~a~al~~~G~~eIvLTsgdr~dl~d~----G~~~~~~lir~Ik~~~p--~i~Ie~-l~pd~~g~~e~l~~L~~aGl 233 (375)
--...|+++...|..=++|+|-..-+.|.+ ......++.+.+.+..+ ++.|.+ -+.||.-....-..++.++-
T Consensus 31 ~G~~lA~~~~~~Ga~V~li~g~~~~~~p~~~~~i~v~sa~em~~~~~~~~~~~Di~I~aAAVsDf~p~~~~~~KIkK~~~ 110 (185)
T PF04127_consen 31 MGAALAEEAARRGAEVTLIHGPSSLPPPPGVKVIRVESAEEMLEAVKELLPSADIIIMAAAVSDFRPEEPAEGKIKKSSG 110 (185)
T ss_dssp HHHHHHHHHHHTT-EEEEEE-TTS----TTEEEEE-SSHHHHHHHHHHHGGGGSEEEE-SB--SEEESCHHSS-G---TT
T ss_pred HHHHHHHHHHHCCCEEEEEecCccccccccceEEEecchhhhhhhhccccCcceeEEEecchhheeehhccccccccccC
Confidence 345678899999997666666532222321 12334555555554433 454443 45576432222345554333
Q ss_pred ccccccccchHHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEec-CCCHHHHHHHHHHHHHcCCcEEeee
Q 017200 234 NVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGC-GETPDQVVSTMEKVRAAGVDVMTFG 310 (375)
Q Consensus 234 dv~~hnlEtv~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~tkt~imvGl-GET~ee~~etl~~Lrelgvd~v~i~ 310 (375)
+.+...++..+.+++.++ +...|. .+++|| =||++.+....+.|.+-++|.|-.-
T Consensus 111 ~~l~l~L~~~pkIL~~l~----------------~~~~~~------~~lVGFkaEt~~l~~~A~~kl~~k~~D~IVaN 166 (185)
T PF04127_consen 111 DELTLELKPTPKILAELR----------------KNKKPN------QFLVGFKAETEELIENAKEKLERKGADLIVAN 166 (185)
T ss_dssp -CEEEEEEE-GGHGCCHH----------------HHCSTT------TEEEEEEEESCHHHHHHHHHHHHCT-SEEEEE
T ss_pred cceEEEEEeChHHHHHHH----------------hcccCC------cEEEEEEecCCcHHHHHHHHhHhhCCCEEEEe
Confidence 445555555566655553 111122 269999 8897777777888999999988664
No 427
>PRK04165 acetyl-CoA decarbonylase/synthase complex subunit gamma; Provisional
Probab=63.73 E-value=2e+02 Score=30.30 Aligned_cols=68 Identities=19% Similarity=0.253 Sum_probs=45.2
Q ss_pred CCcchHHHHHHHH-----HhcC----CcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCCCcEEEeecCCCCCChHHHHH
Q 017200 157 PDPDEPTNVAEAI-----ASWG----LDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVRE 227 (375)
Q Consensus 157 ld~eEi~~~a~al-----~~~G----~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p~i~Ie~l~pd~~g~~e~l~~ 227 (375)
++.+++...++.+ ...| ++-|.|-.... | .+.+..+|+.|++.. ++.+.+-+ + +.+.++.
T Consensus 102 l~~e~i~~r~~~~~~~~~~rvG~~~~AD~IaL~~~s~----d--p~~v~~~Vk~V~~~~-dvPLSIDT--~--dpevlea 170 (450)
T PRK04165 102 MDDEEIDARLKKINNFQFERVGEILKLDMVALRNASG----D--PEKFAKAVKKVAETT-DLPLILCS--E--DPAVLKA 170 (450)
T ss_pred CChHHHHHHHHHhhcchHhhhcccccCCEEEEeCCCC----C--HHHHHHHHHHHHHhc-CCCEEEeC--C--CHHHHHH
Confidence 6678898888888 4445 66666554322 1 566899999998753 34443333 2 6788888
Q ss_pred HHHcCccc
Q 017200 228 VAKSGLNV 235 (375)
Q Consensus 228 L~~aGldv 235 (375)
-.++|.|.
T Consensus 171 Aleagad~ 178 (450)
T PRK04165 171 ALEVVADR 178 (450)
T ss_pred HHHhcCCC
Confidence 88888764
No 428
>PLN02591 tryptophan synthase
Probab=63.53 E-value=1.5e+02 Score=28.67 Aligned_cols=122 Identities=16% Similarity=0.223 Sum_probs=69.3
Q ss_pred HHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCCCc-EEEeecCCCCCChHHHHHHHHcCcccccccccc
Q 017200 164 NVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNM-LIEALVPDFRGNNGCVREVAKSGLNVFAHNIET 242 (375)
Q Consensus 164 ~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p~i-~Ie~l~pd~~g~~e~l~~L~~aGldv~~hnlEt 242 (375)
+..+.+++.|++-++| +||| .+...++++..++. ++ .|-+..|.. +.+.++.+.+..-..+ ..
T Consensus 97 ~F~~~~~~aGv~Gvii-----pDLP---~ee~~~~~~~~~~~--gl~~I~lv~Ptt--~~~ri~~ia~~~~gFI----Y~ 160 (250)
T PLN02591 97 KFMATIKEAGVHGLVV-----PDLP---LEETEALRAEAAKN--GIELVLLTTPTT--PTERMKAIAEASEGFV----YL 160 (250)
T ss_pred HHHHHHHHcCCCEEEe-----CCCC---HHHHHHHHHHHHHc--CCeEEEEeCCCC--CHHHHHHHHHhCCCcE----EE
Confidence 4466677888877765 4776 45556666666553 34 445555665 5566777766543322 11
Q ss_pred hHHHHHHhcC-CCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecCCC-HHHHHHHHHHHHHcCCcEEeeecCC
Q 017200 243 VEELQSAVRD-HRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGET-PDQVVSTMEKVRAAGVDVMTFGQYM 313 (375)
Q Consensus 243 v~rl~~~mr~-r~~s~~~~l~vl~~ak~~~p~Gl~tkt~imvGlGET-~ee~~etl~~Lrelgvd~v~i~qYl 313 (375)
+.+ .-+.+ +.....+..+.++.+|+. +..-+++|||-+ .|++. .+.+.|.|-+-+|..+
T Consensus 161 Vs~--~GvTG~~~~~~~~~~~~i~~vk~~------~~~Pv~vGFGI~~~e~v~----~~~~~GADGvIVGSal 221 (250)
T PLN02591 161 VSS--TGVTGARASVSGRVESLLQELKEV------TDKPVAVGFGISKPEHAK----QIAGWGADGVIVGSAM 221 (250)
T ss_pred eeC--CCCcCCCcCCchhHHHHHHHHHhc------CCCceEEeCCCCCHHHHH----HHHhcCCCEEEECHHH
Confidence 100 00111 111123445557777762 466789999777 65554 3667889988888543
No 429
>PRK11572 copper homeostasis protein CutC; Provisional
Probab=63.42 E-value=1.5e+02 Score=28.74 Aligned_cols=121 Identities=16% Similarity=0.198 Sum_probs=74.6
Q ss_pred cchHHHHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCCCcEE--E-ee--cCCCCCChHHHHHHHHcCc
Q 017200 159 PDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLI--E-AL--VPDFRGNNGCVREVAKSGL 233 (375)
Q Consensus 159 ~eEi~~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p~i~I--e-~l--~pd~~g~~e~l~~L~~aGl 233 (375)
.+...+.++.+++.|++.||+=--+.+.--| .+...++++.. ..+.+ + ++ ++| ..+.++.|.+.|+
T Consensus 72 ~~~M~~di~~~~~~GadGvV~G~L~~dg~vD--~~~~~~Li~~a----~~~~vTFHRAfD~~~d---~~~al~~l~~lG~ 142 (248)
T PRK11572 72 FAAMLEDIATVRELGFPGLVTGVLDVDGHVD--MPRMRKIMAAA----GPLAVTFHRAFDMCAN---PLNALKQLADLGV 142 (248)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeeECCCCCcC--HHHHHHHHHHh----cCCceEEechhhccCC---HHHHHHHHHHcCC
Confidence 3445667888899999988865444333334 33344444333 22222 1 21 222 2567899999998
Q ss_pred ccc-cccccchHHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcCCcEEeee
Q 017200 234 NVF-AHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFG 310 (375)
Q Consensus 234 dv~-~hnlEtv~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~tkt~imvGlGET~ee~~etl~~Lrelgvd~v~i~ 310 (375)
+.+ .++ ...+..+-++.|+.+.+... |. + ||.|=|=+.+.+.+. .+.|+..+|..
T Consensus 143 ~rILTSG-------------g~~~a~~g~~~L~~lv~~a~-~~-~---Im~GgGV~~~Nv~~l----~~tG~~~~H~s 198 (248)
T PRK11572 143 ARILTSG-------------QQQDAEQGLSLIMELIAASD-GP-I---IMAGAGVRLSNLHKF----LDAGVREVHSS 198 (248)
T ss_pred CEEECCC-------------CCCCHHHHHHHHHHHHHhcC-CC-E---EEeCCCCCHHHHHHH----HHcCCCEEeeC
Confidence 754 332 23445666777777766543 32 2 999999999998774 25899888874
No 430
>TIGR02764 spore_ybaN_pdaB polysaccharide deacetylase family sporulation protein PdaB. This model describes the YbaN protein family, also called PdaB and SpoVIE, of Gram-positive bacteria. Although ybaN null mutants have only a mild sporulation defect, ybaN/ytrI double mutants show drastically reducted sporulation efficiencies. This synthetic defect suggests the role of this sigmaE-controlled gene in sporulation had been masked by functional redundancy. Members of this family are homologous to a characterized polysaccharide deacetylase; the exact function this protein family is unknown.
Probab=62.91 E-value=1.1e+02 Score=27.28 Aligned_cols=131 Identities=11% Similarity=0.167 Sum_probs=73.6
Q ss_pred HHHHHHHhcCCcEEEEEeeeCCCCCcccH----HHHHHHHHHHHHhCCCcEEEeecCCC-CCChHHHHHHHHcCcccccc
Q 017200 164 NVAEAIASWGLDYVVITSVDRDDLADQGS----GHFAQTVRKLKELKPNMLIEALVPDF-RGNNGCVREVAKSGLNVFAH 238 (375)
Q Consensus 164 ~~a~al~~~G~~eIvLTsgdr~dl~d~G~----~~~~~lir~Ik~~~p~i~Ie~l~pd~-~g~~e~l~~L~~aGldv~~h 238 (375)
+.++++.+.|. +|-.=|-.+.++..... ..+....+.|++.. +.....+-|.+ .-+...++.+++.|..++.-
T Consensus 49 ~~~~~i~~~Gh-eig~Ht~~H~~~~~~~~~~~~~ei~~~~~~l~~~~-g~~~~~fr~P~G~~~~~~~~~l~~~G~~~v~w 126 (191)
T TIGR02764 49 ELVKEIVKDGH-EIGSHGYRHKNYTTLEDEKIKKDILRAQEIIEKLT-GKKPTLFRPPSGAFNKAVLKAAESLGYTVVHW 126 (191)
T ss_pred HHHHHHHhCCC-EEEECCcCCCCcccCCHHHHHHHHHHHHHHHHHHh-CCCCCEEECCCcCCCHHHHHHHHHcCCeEEEe
Confidence 34567777785 66555555555543222 23334444555443 22223333322 12688899999999888777
Q ss_pred cccchHHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEec-CC----CHHHHHHHHHHHHHcCCcEEeeec
Q 017200 239 NIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGC-GE----TPDQVVSTMEKVRAAGVDVMTFGQ 311 (375)
Q Consensus 239 nlEtv~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~tkt~imvGl-GE----T~ee~~etl~~Lrelgvd~v~i~q 311 (375)
++++.+-. ..+.++ +++.+.+....| +|++-+ |+ |.+.+-..+..|++.|..++++.+
T Consensus 127 ~~~~~D~~-------~~~~~~---i~~~~~~~~~~g-----~Iil~Hd~~~~~~t~~~l~~~i~~l~~~Gy~~vtl~~ 189 (191)
T TIGR02764 127 SVDSRDWK-------NPGVES---IVDRVVKNTKPG-----DIILLHASDSAKQTVKALPTIIKKLKEKGYEFVTISE 189 (191)
T ss_pred cCCCCccC-------CCCHHH---HHHHHHhcCCCC-----CEEEEeCCCCcHhHHHHHHHHHHHHHHCCCEEEEHHH
Confidence 76654410 122333 223332211123 467767 44 566777888899999999999854
No 431
>COG1105 FruK Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) [Carbohydrate transport and metabolism]
Probab=62.62 E-value=1.2e+02 Score=30.32 Aligned_cols=81 Identities=16% Similarity=0.216 Sum_probs=52.8
Q ss_pred CCCcchHHHHHHHHHh-cCC-cEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCCCcEEEeecCCCCCChHHHHHHHHcCc
Q 017200 156 PPDPDEPTNVAEAIAS-WGL-DYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGL 233 (375)
Q Consensus 156 ~ld~eEi~~~a~al~~-~G~-~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGl 233 (375)
.++.+|.....+.+.. ..- +.|||.|-..+.++ .++|.++++.+++....+.+ |. +.+.|....++++
T Consensus 110 ~is~~~~~~~l~~~~~~l~~~d~VvlsGSlP~g~~---~d~y~~li~~~~~~g~~vil-----D~--Sg~~L~~~L~~~P 179 (310)
T COG1105 110 EISEAELEQFLEQLKALLESDDIVVLSGSLPPGVP---PDAYAELIRILRQQGAKVIL-----DT--SGEALLAALEAKP 179 (310)
T ss_pred CCCHHHHHHHHHHHHHhcccCCEEEEeCCCCCCCC---HHHHHHHHHHHHhcCCeEEE-----EC--ChHHHHHHHccCC
Confidence 3788888877777776 443 44555544444444 68999999999886433333 22 5678888888888
Q ss_pred ccccccccchHHH
Q 017200 234 NVFAHNIETVEEL 246 (375)
Q Consensus 234 dv~~hnlEtv~rl 246 (375)
+.+--|.|-...+
T Consensus 180 ~lIKPN~~EL~~~ 192 (310)
T COG1105 180 WLIKPNREELEAL 192 (310)
T ss_pred cEEecCHHHHHHH
Confidence 8876665443333
No 432
>PRK12738 kbaY tagatose-bisphosphate aldolase; Reviewed
Probab=62.51 E-value=1.6e+02 Score=28.96 Aligned_cols=166 Identities=14% Similarity=0.104 Sum_probs=98.3
Q ss_pred CCcchHHHHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCCCcEEEeecCCCCCChHHHHHHHHcCcccc
Q 017200 157 PDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVF 236 (375)
Q Consensus 157 ld~eEi~~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGldv~ 236 (375)
.+.+.+...++++.+.+.-=|+-++...-.+ .|.+.+..+++.+.+.. .+.|. +.-|+..+.+.+..-.++|-+++
T Consensus 26 ~n~e~~~avi~AAee~~sPvIlq~s~~~~~~--~~~~~~~~~~~~~a~~~-~VPVa-lHLDHg~~~e~i~~ai~~GFtSV 101 (286)
T PRK12738 26 HNAETIQAILEVCSEMRSPVILAGTPGTFKH--IALEEIYALCSAYSTTY-NMPLA-LHLDHHESLDDIRRKVHAGVRSA 101 (286)
T ss_pred CCHHHHHHHHHHHHHHCCCEEEEcCcchhhh--CCHHHHHHHHHHHHHHC-CCCEE-EECCCCCCHHHHHHHHHcCCCeE
Confidence 3467777888888888887666655533222 34677888888887765 34443 55576667888888889986654
Q ss_pred cccccchHHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCceEEE--eEEEecCCCH------H----HHHHHHHHHHHcCC
Q 017200 237 AHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKT--SIMLGCGETP------D----QVVSTMEKVRAAGV 304 (375)
Q Consensus 237 ~hnlEtv~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~tkt--~imvGlGET~------e----e~~etl~~Lrelgv 304 (375)
.++.+.-=| .-+.+...++.+.||. .|+.+-. |-|-|- |.. + +-.+..+++++.|+
T Consensus 102 --M~DgS~lp~------eeNi~~T~evv~~Ah~---~gv~VEaElG~igg~-ed~~~~~~~~~~~T~peea~~Fv~~Tgv 169 (286)
T PRK12738 102 --MIDGSHFPF------AENVKLVKSVVDFCHS---QDCSVEAELGRLGGV-EDDMSVDAESAFLTDPQEAKRFVELTGV 169 (286)
T ss_pred --eecCCCCCH------HHHHHHHHHHHHHHHH---cCCeEEEEEEeeCCc-cCCcccccchhcCCCHHHHHHHHHHhCC
Confidence 344432101 1233455677888887 3555433 333222 211 1 45677889999999
Q ss_pred cEEeeecCCCCCCCCCCccccCCH-HHHHHHHHHHHHhhhh
Q 017200 305 DVMTFGQYMRPSKRHMPVSEYITP-EAFERYRALGMEMGFR 344 (375)
Q Consensus 305 d~v~i~qYl~P~~~~~~v~~~v~p-e~~~~l~~~a~~~gf~ 344 (375)
|.+-+. + ++-|-.-.. .| =.|++|+++....+.-
T Consensus 170 D~LAva-i---Gt~HG~Y~~--~p~Ldfd~l~~I~~~~~vP 204 (286)
T PRK12738 170 DSLAVA-I---GTAHGLYSK--TPKIDFQRLAEIREVVDVP 204 (286)
T ss_pred CEEEec-c---CcccCCCCC--CCcCCHHHHHHHHHHhCCC
Confidence 987663 1 122211111 12 1477787777776653
No 433
>PLN02334 ribulose-phosphate 3-epimerase
Probab=62.43 E-value=49 Score=30.97 Aligned_cols=79 Identities=23% Similarity=0.338 Sum_probs=48.1
Q ss_pred CcchHHHHHHHHHhcC-CcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCCCcEEEeecCCCCCChHHHHHHHHcCcccc
Q 017200 158 DPDEPTNVAEAIASWG-LDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVF 236 (375)
Q Consensus 158 d~eEi~~~a~al~~~G-~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGldv~ 236 (375)
.++.+.+.++++.+.| +++|.+-++....-...-...-.+.++++++..+++.|.+ .+.. +.+.+..+.++|+|.+
T Consensus 123 ~~~t~~~~~~~~~~~~~~Dyi~~~~v~pg~~~~~~~~~~~~~i~~~~~~~~~~~I~a-~GGI--~~e~i~~l~~aGad~v 199 (229)
T PLN02334 123 NPGTPVEAVEPVVEKGLVDMVLVMSVEPGFGGQSFIPSMMDKVRALRKKYPELDIEV-DGGV--GPSTIDKAAEAGANVI 199 (229)
T ss_pred CCCCCHHHHHHHHhccCCCEEEEEEEecCCCccccCHHHHHHHHHHHHhCCCCcEEE-eCCC--CHHHHHHHHHcCCCEE
Confidence 3445556666666664 9999887665321111001234556677776655554443 3334 7889999999999987
Q ss_pred ccc
Q 017200 237 AHN 239 (375)
Q Consensus 237 ~hn 239 (375)
..+
T Consensus 200 vvg 202 (229)
T PLN02334 200 VAG 202 (229)
T ss_pred EEC
Confidence 653
No 434
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=62.43 E-value=36 Score=34.16 Aligned_cols=80 Identities=16% Similarity=0.260 Sum_probs=51.5
Q ss_pred CCcchHHHHHHHHHhcC-CcEEEEEeeeCCC-------CCc--ccHHHHHHHHHHHHHhCCCcEEEeecCCCCCChHHHH
Q 017200 157 PDPDEPTNVAEAIASWG-LDYVVITSVDRDD-------LAD--QGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVR 226 (375)
Q Consensus 157 ld~eEi~~~a~al~~~G-~~eIvLTsgdr~d-------l~d--~G~~~~~~lir~Ik~~~p~i~Ie~l~pd~~g~~e~l~ 226 (375)
++++|.+..++.+.+.| ++.|.|++|.... .+. .+..++.+.++.+|+... +.|- ..+++. +.+..+
T Consensus 225 ~~~~e~~~~~~~l~~~G~vd~i~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~-ipvi-~~G~i~-~~~~~~ 301 (343)
T cd04734 225 LSPDEALEIAARLAAEGLIDYVNVSAGSYYTLLGLAHVVPSMGMPPGPFLPLAARIKQAVD-LPVF-HAGRIR-DPAEAE 301 (343)
T ss_pred CCHHHHHHHHHHHHhcCCCCEEEeCCCCCCcccccccccCCCCCCcchhHHHHHHHHHHcC-CCEE-eeCCCC-CHHHHH
Confidence 57789999999999998 8999998774221 111 112345677888887652 3322 344543 566677
Q ss_pred HHHHc-Cccccccc
Q 017200 227 EVAKS-GLNVFAHN 239 (375)
Q Consensus 227 ~L~~a-Gldv~~hn 239 (375)
.+.+. ++|.+..+
T Consensus 302 ~~l~~~~~D~V~~g 315 (343)
T cd04734 302 QALAAGHADMVGMT 315 (343)
T ss_pred HHHHcCCCCeeeec
Confidence 66665 48877665
No 435
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=62.40 E-value=26 Score=35.11 Aligned_cols=81 Identities=11% Similarity=0.062 Sum_probs=52.0
Q ss_pred CCCcchHHHHHHHHHhcCCcEEEEEeeeCCCCC-cccHHHHHHHHHHHHHhCCCcEEEeecCCCCCChHHHHHHHHcC-c
Q 017200 156 PPDPDEPTNVAEAIASWGLDYVVITSVDRDDLA-DQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSG-L 233 (375)
Q Consensus 156 ~ld~eEi~~~a~al~~~G~~eIvLTsgdr~dl~-d~G~~~~~~lir~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aG-l 233 (375)
.++++|.++.++.+.+.|+++|.++++.....+ +....++.++.+.||+... +.|- ..+++. +.+..+.+.+.| +
T Consensus 223 G~~~~e~~~i~~~l~~~gvD~i~vs~g~~~~~~~~~~~~~~~~~~~~ik~~~~-ipVi-~~G~i~-~~~~a~~~l~~g~~ 299 (337)
T PRK13523 223 GLTVQDYVQYAKWMKEQGVDLIDVSSGAVVPARIDVYPGYQVPFAEHIREHAN-IATG-AVGLIT-SGAQAEEILQNNRA 299 (337)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCccccHHHHHHHHhhcC-CcEE-EeCCCC-CHHHHHHHHHcCCC
Confidence 367899999999999999999999998521100 1001224567777877542 3322 233433 577777777766 7
Q ss_pred cccccc
Q 017200 234 NVFAHN 239 (375)
Q Consensus 234 dv~~hn 239 (375)
|.+..+
T Consensus 300 D~V~~g 305 (337)
T PRK13523 300 DLIFIG 305 (337)
T ss_pred ChHHhh
Confidence 877654
No 436
>COG1902 NemA NADH:flavin oxidoreductases, Old Yellow Enzyme family [Energy production and conversion]
Probab=62.26 E-value=37 Score=34.61 Aligned_cols=100 Identities=17% Similarity=0.241 Sum_probs=61.0
Q ss_pred CCccCCCCcCCCCCCCCCCCCCCcchHHHHHHHHHhcC-CcEEEEEeeeCC--C-CCcccHHHHHHHHHHHHHhCCCcEE
Q 017200 136 GDTCTRGCRFCNVKTSRAPPPPDPDEPTNVAEAIASWG-LDYVVITSVDRD--D-LADQGSGHFAQTVRKLKELKPNMLI 211 (375)
Q Consensus 136 ~d~C~~~C~FC~v~~~r~~~~ld~eEi~~~a~al~~~G-~~eIvLTsgdr~--d-l~d~G~~~~~~lir~Ik~~~p~i~I 211 (375)
+..+.-+.+.+.... ......+++|....++.+.+.| +++|.++++... . ....+..++....+.++...- +.+
T Consensus 214 g~~~~vg~Rls~~d~-~~~~g~~~~e~~~la~~L~~~G~~d~i~vs~~~~~~~~~~~~~~~~~~~~~a~~i~~~~~-~pv 291 (363)
T COG1902 214 GADFPVGVRLSPDDF-FDGGGLTIEEAVELAKALEEAGLVDYIHVSEGGYERGGTITVSGPGYQVEFAARIKKAVR-IPV 291 (363)
T ss_pred CCCceEEEEECcccc-CCCCCCCHHHHHHHHHHHHhcCCccEEEeecccccCCCCccccccchhHHHHHHHHHhcC-CCE
Confidence 444434444444333 1122478889999999999999 799999998642 1 211113456666666765431 222
Q ss_pred EeecCCCCCChHHHHHHHHcC-ccccccc
Q 017200 212 EALVPDFRGNNGCVREVAKSG-LNVFAHN 239 (375)
Q Consensus 212 e~l~pd~~g~~e~l~~L~~aG-ldv~~hn 239 (375)
- .++.. -+.+..+.+.+.| +|.+..+
T Consensus 292 i-~~G~i-~~~~~Ae~~l~~g~aDlVa~g 318 (363)
T COG1902 292 I-AVGGI-NDPEQAEEILASGRADLVAMG 318 (363)
T ss_pred E-EeCCC-CCHHHHHHHHHcCCCCEEEec
Confidence 1 11211 1788889998887 8888775
No 437
>KOG4175 consensus Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=62.10 E-value=1.1e+02 Score=29.04 Aligned_cols=26 Identities=31% Similarity=0.268 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHhhhhhhccc---hhhhhh
Q 017200 328 PEAFERYRALGMEMGFRYVASG---PMVRSS 355 (375)
Q Consensus 328 pe~~~~l~~~a~~~gf~~~~sg---p~vrss 355 (375)
.++.+.|-++| -+|-|+.|- --+|+|
T Consensus 161 deRmell~~~a--dsFiYvVSrmG~TG~~~s 189 (268)
T KOG4175|consen 161 DERMELLVEAA--DSFIYVVSRMGVTGTRES 189 (268)
T ss_pred HHHHHHHHHhh--cceEEEEEeccccccHHH
Confidence 45677776665 468887653 235777
No 438
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=61.96 E-value=42 Score=32.19 Aligned_cols=78 Identities=23% Similarity=0.212 Sum_probs=47.0
Q ss_pred CCcchHHHHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCCC--cEEEe-ecCCCCCChHHHHHHHHcCc
Q 017200 157 PDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPN--MLIEA-LVPDFRGNNGCVREVAKSGL 233 (375)
Q Consensus 157 ld~eEi~~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p~--i~Ie~-l~pd~~g~~e~l~~L~~aGl 233 (375)
.+++.+.+.++++.+.|++.|.|- |...-.....+.++++.|++..|+ +.+++ .+-++.--........++|+
T Consensus 140 ~~~~~~~~~~~~~~~~G~~~i~l~----DT~G~~~P~~v~~lv~~l~~~~~~~~i~l~~H~Hn~~GlA~An~laAi~aG~ 215 (268)
T cd07940 140 TDLDFLIEVVEAAIEAGATTINIP----DTVGYLTPEEFGELIKKLKENVPNIKVPISVHCHNDLGLAVANSLAAVEAGA 215 (268)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEC----CCCCCCCHHHHHHHHHHHHHhCCCCceeEEEEecCCcchHHHHHHHHHHhCC
Confidence 468888999999999999888664 111111145688889999888775 55543 22222101122233346788
Q ss_pred ccccc
Q 017200 234 NVFAH 238 (375)
Q Consensus 234 dv~~h 238 (375)
+.+.-
T Consensus 216 ~~iD~ 220 (268)
T cd07940 216 RQVEC 220 (268)
T ss_pred CEEEE
Confidence 87644
No 439
>TIGR01521 FruBisAldo_II_B fructose-bisphosphate aldolase, class II, Calvin cycle subtype. Members of this family are class II examples of the enzyme fructose-bisphosphate aldolase, an enzyme both of glycolysis and (in the opposite direction) of the Calvin cycle of CO2 fixation. A deep split separates the tightly conserved yeast/E. coli/Mycobacterium subtype (all species lacking the Calvin cycle) represented by model TIGR01520 from a broader group of aldolases that includes both tagatose- and fructose-bisphosphate aldolases. This model represents a distinct, elongated, very well conserved subtype within the latter group. Most species with this aldolase subtype have the Calvin cycle.
Probab=61.73 E-value=1.9e+02 Score=29.41 Aligned_cols=178 Identities=11% Similarity=0.134 Sum_probs=103.5
Q ss_pred CCcchHHHHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCCCcEEEeecCCCCCChHHHHHHHHcCcccc
Q 017200 157 PDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVF 236 (375)
Q Consensus 157 ld~eEi~~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGldv~ 236 (375)
.+.+.+..+++++.+.+.--|+-++...-.+ .|...+..+++.+.+..+.+.|. +.-|.-.+.+.+..-.++|-.++
T Consensus 24 ~n~e~~~aii~AAEe~~sPvIlq~s~~~~~~--~g~~~~~~~~~~~ae~~~~VPVa-lHLDHg~~~e~i~~Ai~~GFtSV 100 (347)
T TIGR01521 24 NNMEQMRAIMEAADKTDSPVILQASRGARSY--AGAPFLRHLILAAIEEYPHIPVV-MHQDHGNSPATCQRAIQLGFTSV 100 (347)
T ss_pred CCHHHHHHHHHHHHHhCCCEEEECCcchhhh--CCHHHHHHHHHHHHHhCCCCcEE-EECCCCCCHHHHHHHHHcCCCEE
Confidence 4567788888888888888777776643333 34677888998888766444443 55566557888888889997654
Q ss_pred cccccchHHHHHHhcCCCCC----HHHHHHHHHHHHHhCCCCceEEE--eEEEecC-----CCH----------H----H
Q 017200 237 AHNIETVEELQSAVRDHRAN----FKQSLDVLMMAKDYVPAGTLTKT--SIMLGCG-----ETP----------D----Q 291 (375)
Q Consensus 237 ~hnlEtv~rl~~~mr~r~~s----~~~~l~vl~~ak~~~p~Gl~tkt--~imvGlG-----ET~----------e----e 291 (375)
.++.+. ++.-. ...+ .+...++++.||. .|+.+-. +-|-|.. +.+ + +
T Consensus 101 --MiDgS~--l~~~~-~~~p~eENI~~Tkevve~Ah~---~GvsVEaELG~igg~e~~~~g~~d~~~~~~~~~~~~~~T~ 172 (347)
T TIGR01521 101 --MMDGSL--REDAK-TPADYDYNVRVTAEVVAFAHA---VGASVEGELGCLGSLETGMGEAEDGHGFEGVLDHSQLLTD 172 (347)
T ss_pred --eecCcC--CcccC-CCCCHHHHHHHHHHHHHHHHH---cCCeEEEEeeecccccccccccccCcccccccchhhcCCC
Confidence 234332 00000 0123 3445577777777 3554433 2332220 011 1 3
Q ss_pred HHHHHHHHHHcCCcEEeeecCCCCCCCCCCccccCCH----HHHHHHHHHHHHh-hh---hhhccc
Q 017200 292 VVSTMEKVRAAGVDVMTFGQYMRPSKRHMPVSEYITP----EAFERYRALGMEM-GF---RYVASG 349 (375)
Q Consensus 292 ~~etl~~Lrelgvd~v~i~qYl~P~~~~~~v~~~v~p----e~~~~l~~~a~~~-gf---~~~~sg 349 (375)
-.+..+++++.|+|.+-+. + ++-|-.-..-++| =.|++|+++.... .+ ++..||
T Consensus 173 PeeA~~Fv~~TgvD~LAva-i---Gt~HG~Yk~~~~p~~~~Ld~~rL~eI~~~v~~vPLVLHGgSG 234 (347)
T TIGR01521 173 PEEAADFVKKTKVDALAVA-I---GTSHGAYKFTRKPTGEVLAIQRIEEIHARLPDTHLVMHGSSS 234 (347)
T ss_pred HHHHHHHHHHHCcCEEehh-c---ccccCCcCCCCCCChhhcCHHHHHHHHccCCCCCEEEeCCCC
Confidence 3678889999999986552 1 1222111110112 2488899998887 35 444676
No 440
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=61.60 E-value=1.4e+02 Score=28.81 Aligned_cols=122 Identities=20% Similarity=0.218 Sum_probs=69.3
Q ss_pred HHHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCCCcEEEeecCCCCCChHHHHHHHHcCcccccc-ccc
Q 017200 163 TNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAH-NIE 241 (375)
Q Consensus 163 ~~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGldv~~h-nlE 241 (375)
.+..+.+++.|++-++| +||| .+...++++..++.. --.|-.+.|.. ..+.++.+.+...+.+-. ..-
T Consensus 107 e~f~~~~~~aGvdGvii-----pDLp---~ee~~~~~~~~~~~g-l~~I~lvap~t--~~eri~~i~~~s~gfIY~vs~~ 175 (258)
T PRK13111 107 ERFAADAAEAGVDGLII-----PDLP---PEEAEELRAAAKKHG-LDLIFLVAPTT--TDERLKKIASHASGFVYYVSRA 175 (258)
T ss_pred HHHHHHHHHcCCcEEEE-----CCCC---HHHHHHHHHHHHHcC-CcEEEEeCCCC--CHHHHHHHHHhCCCcEEEEeCC
Confidence 34566777889988877 4777 455666776766542 23455566665 567788777665553211 110
Q ss_pred chHHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecCC-CHHHHHHHHHHHHHcCCcEEeeecC
Q 017200 242 TVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGE-TPDQVVSTMEKVRAAGVDVMTFGQY 312 (375)
Q Consensus 242 tv~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~tkt~imvGlGE-T~ee~~etl~~Lrelgvd~v~i~qY 312 (375)
.+--. + ......-.+.++.+++. +..-+++|+|- |.+++.+.+ +. .|.+-+|..
T Consensus 176 GvTG~----~--~~~~~~~~~~i~~vk~~------~~~pv~vGfGI~~~e~v~~~~----~~-ADGviVGSa 230 (258)
T PRK13111 176 GVTGA----R--SADAADLAELVARLKAH------TDLPVAVGFGISTPEQAAAIA----AV-ADGVIVGSA 230 (258)
T ss_pred CCCCc----c--cCCCccHHHHHHHHHhc------CCCcEEEEcccCCHHHHHHHH----Hh-CCEEEEcHH
Confidence 11000 0 11112334567777762 25668899987 667766654 23 677777633
No 441
>PRK12290 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=61.21 E-value=1.3e+02 Score=31.60 Aligned_cols=109 Identities=14% Similarity=0.127 Sum_probs=62.7
Q ss_pred HHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCCCcEEEeecCCCCCChHHHHHHHHcCcccccccccch
Q 017200 164 NVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETV 243 (375)
Q Consensus 164 ~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGldv~~hnlEtv 243 (375)
+.++.+.+.|++-|.|= ..++. ...+.+.++++++....-.+.+++-| .++...+.|.|.+..+.|-.
T Consensus 221 ~~ve~aL~aGv~~VQLR---eK~ls---~~el~~la~~l~~l~~~~gv~LiIND------~~dlAl~~gAdGVHLGQeDL 288 (437)
T PRK12290 221 EWIERLLPLGINTVQLR---IKDPQ---QADLEQQIIRAIALGREYNAQVFIND------YWQLAIKHQAYGVHLGQEDL 288 (437)
T ss_pred HHHHHHHhCCCCEEEEe---CCCCC---HHHHHHHHHHHHHHHHHhCCEEEEEC------HHHHHHHcCCCEEEcChHHc
Confidence 35777888999877653 23333 34566666666543322223334422 35666677777776654322
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEec-CCCHHHHHHHHHHHHHcCCcEEeeecCC
Q 017200 244 EELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGC-GETPDQVVSTMEKVRAAGVDVMTFGQYM 313 (375)
Q Consensus 244 ~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~tkt~imvGl-GET~ee~~etl~~Lrelgvd~v~i~qYl 313 (375)
+ ...+++. ...++++|+ --+.+|+... .+.|+|+|.+|+++
T Consensus 289 ~-------------------~~~aR~i------lg~~~iIGvStHs~eEl~~A----~~~gaDYI~lGPIF 330 (437)
T PRK12290 289 E-------------------EANLAQL------TDAGIRLGLSTHGYYELLRI----VQIQPSYIALGHIF 330 (437)
T ss_pred c-------------------hhhhhhh------cCCCCEEEEecCCHHHHHHH----hhcCCCEEEECCcc
Confidence 1 0111221 123467888 7788776443 46899999999887
No 442
>cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain. Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.
Probab=61.15 E-value=37 Score=34.60 Aligned_cols=93 Identities=15% Similarity=0.232 Sum_probs=58.5
Q ss_pred CCCcchHHHHHHHHHhcCCcEEEEEeeeCCC----CCc--ccHHHHHHHHHHHHHhCCCcEEEeecCCCCCChHHHHHHH
Q 017200 156 PPDPDEPTNVAEAIASWGLDYVVITSVDRDD----LAD--QGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVA 229 (375)
Q Consensus 156 ~ld~eEi~~~a~al~~~G~~eIvLTsgdr~d----l~d--~G~~~~~~lir~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~ 229 (375)
.++++|.+..++.+.+.|+++|.++++.... .+. .+...+.+.++.||+.. ++.|- ..+.+. +.+..+.+.
T Consensus 248 g~~~e~~~~~~~~l~~~gvD~l~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~-~~pvi-~~G~i~-~~~~~~~~l 324 (382)
T cd02931 248 GRDLEEGLKAAKILEEAGYDALDVDAGSYDAWYWNHPPMYQKKGMYLPYCKALKEVV-DVPVI-MAGRME-DPELASEAI 324 (382)
T ss_pred CCCHHHHHHHHHHHHHhCCCEEEeCCCCCcccccccCCccCCcchhHHHHHHHHHHC-CCCEE-EeCCCC-CHHHHHHHH
Confidence 3678999999999999999999999886321 111 11234566777787764 23222 344443 677777777
Q ss_pred HcC-ccccccc--ccchHHHHHHhc
Q 017200 230 KSG-LNVFAHN--IETVEELQSAVR 251 (375)
Q Consensus 230 ~aG-ldv~~hn--lEtv~rl~~~mr 251 (375)
+.| +|.+..+ +=..+.+.+++.
T Consensus 325 ~~g~~D~V~~gR~~ladP~l~~k~~ 349 (382)
T cd02931 325 NEGIADMISLGRPLLADPDVVNKIR 349 (382)
T ss_pred HcCCCCeeeechHhHhCccHHHHHH
Confidence 665 7877765 212235555555
No 443
>PRK14847 hypothetical protein; Provisional
Probab=60.87 E-value=1.9e+02 Score=29.18 Aligned_cols=137 Identities=15% Similarity=0.089 Sum_probs=75.9
Q ss_pred CCCcchHHHHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhC---CCcEEEeecCCCCCC-hHHHHHHHHc
Q 017200 156 PPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELK---PNMLIEALVPDFRGN-NGCVREVAKS 231 (375)
Q Consensus 156 ~ld~eEi~~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~---p~i~Ie~l~pd~~g~-~e~l~~L~~a 231 (375)
+++++|=++.|+.+.+.|+++|-+-- |--+... .+.++.|.+.. .+..|.++..-...+ +..++...++
T Consensus 50 ~fs~eeKl~IA~~L~~lGVd~IEvG~------Pa~s~~e-~e~ir~I~~~~~~~~~~~i~~~~r~~~~dId~a~e~~~~~ 122 (333)
T PRK14847 50 PMDGARKLRLFEQLVAVGLKEIEVAF------PSASQTD-FDFVRKLIDERRIPDDVTIEALTQSRPDLIARTFEALAGS 122 (333)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEeeC------CCCCHHH-HHHHHHHHHhCCCCCCcEEEEEecCcHHHHHHHHHHhCCC
Confidence 48999999999999999999996542 2111222 45677775542 246777776542111 1234444444
Q ss_pred CcccccccccchHH-HHHHhcCCCCCHHHHHH----HHHHHHHhCCC--CceEEEeEEEec---CCCHHHHH-HHHHHHH
Q 017200 232 GLNVFAHNIETVEE-LQSAVRDHRANFKQSLD----VLMMAKDYVPA--GTLTKTSIMLGC---GETPDQVV-STMEKVR 300 (375)
Q Consensus 232 Gldv~~hnlEtv~r-l~~~mr~r~~s~~~~l~----vl~~ak~~~p~--Gl~tkt~imvGl---GET~ee~~-etl~~Lr 300 (375)
+.++++..+-+++- +..+++ .+.++.++ .++.|++.... |. +-.+-+|. .-|+-+++ +.++.+.
T Consensus 123 ~~~~Vhi~~p~Sd~h~~~kl~---~s~~~vl~~~~~~v~~Ak~~~~~~~g~--~~~V~~~~EDasRad~dfL~~~~~~a~ 197 (333)
T PRK14847 123 PRAIVHLYNPIAPQWRRIVFG---MSRAEIKEIALAGTRQIRALADANPGT--QWIYEYSPETFSLAELDFAREVCDAVS 197 (333)
T ss_pred CCCEEEEEecCCHHHHHHHhC---CCHHHHHHHHHHHHHHHHHhccccCCC--ceEEEEeeecCCCCCHHHHHHHHHHHH
Confidence 44557777778874 333443 45666654 55566664211 11 11355555 34555554 4444444
Q ss_pred Hc-CC
Q 017200 301 AA-GV 304 (375)
Q Consensus 301 el-gv 304 (375)
+. |.
T Consensus 198 ~~~ga 202 (333)
T PRK14847 198 AIWGP 202 (333)
T ss_pred HHhCC
Confidence 44 53
No 444
>PRK09517 multifunctional thiamine-phosphate pyrophosphorylase/synthase/phosphomethylpyrimidine kinase; Provisional
Probab=60.86 E-value=1.1e+02 Score=34.04 Aligned_cols=115 Identities=19% Similarity=0.241 Sum_probs=63.8
Q ss_pred hHHHHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCCCcEEEeecCCCCCChHHHHHHHHcCcccccccc
Q 017200 161 EPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHNI 240 (375)
Q Consensus 161 Ei~~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGldv~~hnl 240 (375)
.+.+.++++.+.|++-|.|= ..+++ ...+..+++.|++....-.+.+++-| .++...+.|.| +..+.
T Consensus 20 ~~~~~l~~~l~~g~~~iqlR---~K~~~---~~~~~~~a~~l~~l~~~~~~~liind------~~~la~~~~~d-VHlg~ 86 (755)
T PRK09517 20 KVAGIVDSAISGGVSVVQLR---DKNAG---VEDVRAAAKELKELCDARGVALVVND------RLDVAVELGLH-VHIGQ 86 (755)
T ss_pred cHHHHHHHHHhcCCCEEEEe---CCCCC---HHHHHHHHHHHHHHHHHhCCeEEEeC------hHHHHHHcCCC-eecCC
Confidence 46677777888898877663 12333 34466666666543321123334422 35666678888 54433
Q ss_pred cchHHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEec-CCCHHHHHHHHHHHHHc---CCcEEeeecCC
Q 017200 241 ETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGC-GETPDQVVSTMEKVRAA---GVDVMTFGQYM 313 (375)
Q Consensus 241 Etv~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~tkt~imvGl-GET~ee~~etl~~Lrel---gvd~v~i~qYl 313 (375)
+-.+ ++.+++..+ .+.++|. ..|.+|+......-..+ |+|++.||+.+
T Consensus 87 ~dl~-------------------~~~~r~~~~------~~~~iG~S~h~~~e~~~~~~~~~~~g~~gaDYi~~Gpvf 138 (755)
T PRK09517 87 GDTP-------------------YTQARRLLP------AHLELGLTIETLDQLEAVIAQCAETGVALPDVIGIGPVA 138 (755)
T ss_pred CcCC-------------------HHHHHHhcC------CCCEEEEeCCCHHHHHHHHhhhccCCCCCCCEEEECCcc
Confidence 2111 122223211 2356788 78998875443322233 59999999876
No 445
>COG0107 HisF Imidazoleglycerol-phosphate synthase [Amino acid transport and metabolism]
Probab=60.50 E-value=51 Score=31.78 Aligned_cols=77 Identities=18% Similarity=0.274 Sum_probs=55.9
Q ss_pred CCcchHHHHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCCCcEEEeecCCCCCChHHHHHHHHcCcccc
Q 017200 157 PDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVF 236 (375)
Q Consensus 157 ld~eEi~~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGldv~ 236 (375)
.+.-+|++.|+...+.|.+|+++--.+-. .+ |-+-..+.|+++.+. +.|.+..+.-..+.+.++.+..+|.|-+
T Consensus 27 rd~GDpVelA~~Y~e~GADElvFlDItAs--~~-gr~~~~~vv~r~A~~---vfiPltVGGGI~s~eD~~~ll~aGADKV 100 (256)
T COG0107 27 RDAGDPVELAKRYNEEGADELVFLDITAS--SE-GRETMLDVVERVAEQ---VFIPLTVGGGIRSVEDARKLLRAGADKV 100 (256)
T ss_pred hhcCChHHHHHHHHHcCCCeEEEEecccc--cc-cchhHHHHHHHHHhh---ceeeeEecCCcCCHHHHHHHHHcCCCee
Confidence 56778999999999999999998855421 11 234467777777653 4455444443347889999999999999
Q ss_pred ccc
Q 017200 237 AHN 239 (375)
Q Consensus 237 ~hn 239 (375)
..|
T Consensus 101 SIN 103 (256)
T COG0107 101 SIN 103 (256)
T ss_pred eeC
Confidence 887
No 446
>cd00953 KDG_aldolase KDG (2-keto-3-deoxygluconate) aldolases found in archaea. This subfamily of enzymes is adapted for high thermostability and shows specificity for non-phosphorylated substrates. The enzyme catalyses the reversible aldol cleavage of 2-keto-3-dexoygluconate to pyruvate and glyceraldehyde, the third step of a modified non-phosphorylated Entner-Doudoroff pathway of glucose oxidation. KDG aldolase shows no significant sequence similarity to microbial 2-keto-3-deoxyphosphogluconate (KDPG) aldolases, and the enzyme shows no activity with glyceraldehyde 3-phosphate as substrate. The enzyme is a tetramer and a member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=59.68 E-value=93 Score=30.12 Aligned_cols=48 Identities=10% Similarity=0.269 Sum_probs=26.2
Q ss_pred CCHHHHHHHHHHHHHhCCCCceEEEeEEEec-CCCHHHHHHHHHHHHHcCCcEEee
Q 017200 255 ANFKQSLDVLMMAKDYVPAGTLTKTSIMLGC-GETPDQVVSTMEKVRAAGVDVMTF 309 (375)
Q Consensus 255 ~s~~~~l~vl~~ak~~~p~Gl~tkt~imvGl-GET~ee~~etl~~Lrelgvd~v~i 309 (375)
-+.+++.++++.+.+.. + .+|+|. +.+-+|.++..+..+++|.|.+-+
T Consensus 49 Lt~eEr~~l~~~~~~~~--~-----~vi~gvg~~~~~~ai~~a~~a~~~Gad~v~v 97 (279)
T cd00953 49 LSFQEKLELLKAYSDIT--D-----KVIFQVGSLNLEESIELARAAKSFGIYAIAS 97 (279)
T ss_pred CCHHHHHHHHHHHHHHc--C-----CEEEEeCcCCHHHHHHHHHHHHHcCCCEEEE
Confidence 34556666666555532 1 155666 355666666666666666664443
No 447
>cd02812 PcrB_like PcrB_like proteins. One member of this family, a protein from Archaeoglobus fulgidus, has been characterized as a (S)-3-O-geranylgeranylglyceryl phosphate synthase (AfGGGPS). AfGGGPS catalyzes the formation of an ether linkage between sn-glycerol-1-phosphate (G1P) and geranylgeranyl diphosphate (GGPP), the committed step in archaeal lipid biosynthesis. Therefore, it has been proposed that PcrB-like proteins are either prenyltransferases or are involved in lipoteichoic acid biosynthesis although the exact function is still unknown.
Probab=59.67 E-value=1.2e+02 Score=28.78 Aligned_cols=74 Identities=16% Similarity=0.213 Sum_probs=48.9
Q ss_pred CCCcchHHHHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCCCcEEEeecCCCCCChHHHHHHHHcCccc
Q 017200 156 PPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNV 235 (375)
Q Consensus 156 ~ld~eEi~~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGldv 235 (375)
..+++++...|.+...+|++-|-|- +.... .+ .++++.+++...++.+ ..+.-..+.|.++.+.++|.|.
T Consensus 131 ~~~~e~~~ayA~aae~~g~~ivyLe-~SG~~-~~------~e~I~~v~~~~~~~pl--~vGGGIrs~e~a~~l~~aGAD~ 200 (219)
T cd02812 131 DLKPEDAAAYALAAEYLGMPIVYLE-YSGAY-GP------PEVVRAVKKVLGDTPL--IVGGGIRSGEQAKEMAEAGADT 200 (219)
T ss_pred CCCHHHHHHHHHHHHHcCCeEEEeC-CCCCc-CC------HHHHHHHHHhcCCCCE--EEeCCCCCHHHHHHHHHcCCCE
Confidence 5789999999999999996555444 22211 21 4677788775423333 2332223789999999999997
Q ss_pred cccc
Q 017200 236 FAHN 239 (375)
Q Consensus 236 ~~hn 239 (375)
+-.+
T Consensus 201 VVVG 204 (219)
T cd02812 201 IVVG 204 (219)
T ss_pred EEEC
Confidence 6544
No 448
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=59.35 E-value=49 Score=32.90 Aligned_cols=81 Identities=16% Similarity=0.261 Sum_probs=52.9
Q ss_pred CCCcchHHHHHHHHHhcCCcEEEEEeeeCCCCC-----c----ccHHHHHHHHHHHHHhCCCcEEEeecCCCCCChHHHH
Q 017200 156 PPDPDEPTNVAEAIASWGLDYVVITSVDRDDLA-----D----QGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVR 226 (375)
Q Consensus 156 ~ld~eEi~~~a~al~~~G~~eIvLTsgdr~dl~-----d----~G~~~~~~lir~Ik~~~p~i~Ie~l~pd~~g~~e~l~ 226 (375)
.++++|.++.++.+.+.|++.|.++++...... + ....++.+..+.||+.. ++.|-+ .+.+. +.+..+
T Consensus 232 g~~~eea~~ia~~Le~~Gvd~iev~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~v-~iPVi~-~G~i~-t~~~a~ 308 (338)
T cd04733 232 GFTEEDALEVVEALEEAGVDLVELSGGTYESPAMAGAKKESTIAREAYFLEFAEKIRKVT-KTPLMV-TGGFR-TRAAME 308 (338)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEecCCCCCCccccccccCCccccchhhHHHHHHHHHHc-CCCEEE-eCCCC-CHHHHH
Confidence 367889999999999999999999988532111 0 01234577888888865 343332 22332 567777
Q ss_pred HHHHcC-ccccccc
Q 017200 227 EVAKSG-LNVFAHN 239 (375)
Q Consensus 227 ~L~~aG-ldv~~hn 239 (375)
.+.+.| +|.+..+
T Consensus 309 ~~l~~g~aD~V~lg 322 (338)
T cd04733 309 QALASGAVDGIGLA 322 (338)
T ss_pred HHHHcCCCCeeeeC
Confidence 777665 7887665
No 449
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=59.28 E-value=2.2e+02 Score=29.47 Aligned_cols=111 Identities=16% Similarity=0.226 Sum_probs=65.7
Q ss_pred hHHHHHHHHcCcccccccccchHHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHH
Q 017200 222 NGCVREVAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRA 301 (375)
Q Consensus 222 ~e~l~~L~~aGldv~~hnlEtv~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~tkt~imvGlGET~ee~~etl~~Lre 301 (375)
.+.++.|.++|+|++.. ++.. ++ -+...+.++.+|+.+|. + .+|+|-.-|.++..+.+ +
T Consensus 155 ~~~v~~lv~aGvDvI~i--D~a~---------g~-~~~~~~~v~~ik~~~p~-~----~vi~g~V~T~e~a~~l~----~ 213 (404)
T PRK06843 155 IERVEELVKAHVDILVI--DSAH---------GH-STRIIELVKKIKTKYPN-L----DLIAGNIVTKEAALDLI----S 213 (404)
T ss_pred HHHHHHHHhcCCCEEEE--ECCC---------CC-ChhHHHHHHHHHhhCCC-C----cEEEEecCCHHHHHHHH----H
Confidence 47899999999999863 2221 12 35567888888887765 3 37888878988876655 5
Q ss_pred cCCcEEeeecCCCCCCCC-CC-ccccCCH--HHHHHHHHHHHHhhhhhhccchhhhhhc
Q 017200 302 AGVDVMTFGQYMRPSKRH-MP-VSEYITP--EAFERYRALGMEMGFRYVASGPMVRSSY 356 (375)
Q Consensus 302 lgvd~v~i~qYl~P~~~~-~~-v~~~v~p--e~~~~l~~~a~~~gf~~~~sgp~vrssy 356 (375)
+|+|.|-++ +-|...+ .. +...-.| ..+..+.+++.+.+...++.| -+|++.
T Consensus 214 aGaD~I~vG--~g~Gs~c~tr~~~g~g~p~ltai~~v~~~~~~~~vpVIAdG-GI~~~~ 269 (404)
T PRK06843 214 VGADCLKVG--IGPGSICTTRIVAGVGVPQITAICDVYEVCKNTNICIIADG-GIRFSG 269 (404)
T ss_pred cCCCEEEEC--CCCCcCCcceeecCCCCChHHHHHHHHHHHhhcCCeEEEeC-CCCCHH
Confidence 799998876 3353211 11 1111012 233344555555555555666 444443
No 450
>KOG0369 consensus Pyruvate carboxylase [Energy production and conversion]
Probab=59.22 E-value=75 Score=35.24 Aligned_cols=176 Identities=17% Similarity=0.235 Sum_probs=90.5
Q ss_pred CcchHHHHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCCCcEEEeecCCCCCC-hHHHHHHHHcCcccc
Q 017200 158 DPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGN-NGCVREVAKSGLNVF 236 (375)
Q Consensus 158 d~eEi~~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p~i~Ie~l~pd~~g~-~e~l~~L~~aGldv~ 236 (375)
+.+=-++.++.+++.|..-..|---.. -+. ...--=+|.+|+.++|++.|++-+-|-.|. ......-..+|.|++
T Consensus 716 ~L~YY~nlad~lV~agtHiL~IKDMAG-~lK---P~aa~lLi~alRdk~PdlPiHvHtHDtsGagVAsMlaca~AGADVV 791 (1176)
T KOG0369|consen 716 NLDYYLNLADKLVKAGTHILGIKDMAG-VLK---PEAAKLLIGALRDKFPDLPIHVHTHDTSGAGVASMLACALAGADVV 791 (1176)
T ss_pred cHHHHHHHHHHHHhccCeEEeehhhhc-ccC---HHHHHHHHHHHHhhCCCCceEEeccCCccHHHHHHHHHHHcCCcee
Confidence 344455666666666654333221000 010 011112456778888998888766665431 233444567888887
Q ss_pred cccccch---------HHHHHHhcCC----------CCCHHHHHHHHHHHHHh------------------CCCCceEEE
Q 017200 237 AHNIETV---------EELQSAVRDH----------RANFKQSLDVLMMAKDY------------------VPAGTLTKT 279 (375)
Q Consensus 237 ~hnlEtv---------~rl~~~mr~r----------~~s~~~~l~vl~~ak~~------------------~p~Gl~tkt 279 (375)
...+++. ..+...+.+- -..|+.||+-.+.+-.- .|.|--|+-
T Consensus 792 DvA~dSMSGmTSQPSmgA~vAsl~Gt~~Dt~l~~~~v~eysaYWe~~R~LYapFe~tttmksgn~dVY~hEIPGGQyTNL 871 (1176)
T KOG0369|consen 792 DVAVDSMSGMTSQPSMGALVASLQGTPLDTGLNLEHVREYSAYWEQMRLLYAPFECTTTMKSGNSDVYQHEIPGGQYTNL 871 (1176)
T ss_pred eeecccccccccCCchhhhhhhccCCcccCCCchHHHHHHHHHHHHHhhhhchhhhcccccCCCcchhhccCCCcceeee
Confidence 6553321 1222222210 01255556555443221 233432332
Q ss_pred e---EEEecCCCHHHHHHHHHHHHHcCCcEEeeecCCCCCCCC------CCccccCCHHHHHHHHHHHHHhhhh
Q 017200 280 S---IMLGCGETPDQVVSTMEKVRAAGVDVMTFGQYMRPSKRH------MPVSEYITPEAFERYRALGMEMGFR 344 (375)
Q Consensus 280 ~---imvGlGET~ee~~etl~~Lrelgvd~v~i~qYl~P~~~~------~~v~~~v~pe~~~~l~~~a~~~gf~ 344 (375)
. .-+|||+..+|+.........+==|+|.+. |+.+- .-|.+..+ .+.+...|.++.|-
T Consensus 872 ~FQA~slGLG~q~~evKkaYrEAN~lLGDiiKVT----PsSKvVGDLAQFMVqN~Lt---~~~~~~rA~~LsFP 938 (1176)
T KOG0369|consen 872 QFQAFSLGLGEQFAEVKKAYREANLLLGDIIKVT----PSSKVVGDLAQFMVQNKLT---RDDVERRAEELSFP 938 (1176)
T ss_pred eeehhhccchhhHHHHHHHHHHHHHHhhCeeeec----cchhhHHHHHHHHHhcCCC---HHHHHHHhhhcCCc
Confidence 2 247999999999888877766656888875 54321 11333333 24455566676663
No 451
>cd03316 MR_like Mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. Members of the MR subgroup are mandelate racemase, D-glucarate/L-idarate dehydratase (GlucD), D-altronate/D-mannonate dehydratase , D-galactonate dehydratase (GalD) , D-gluconate dehydratase (GlcD), and L-rhamnonate dehydratase (RhamD).
Probab=59.20 E-value=1.7e+02 Score=28.90 Aligned_cols=153 Identities=20% Similarity=0.195 Sum_probs=80.4
Q ss_pred CcchHHHHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhC-CCcEEEeecCCCCC--Ch-HHHHHHHHcCc
Q 017200 158 DPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELK-PNMLIEALVPDFRG--NN-GCVREVAKSGL 233 (375)
Q Consensus 158 d~eEi~~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~-p~i~Ie~l~pd~~g--~~-e~l~~L~~aGl 233 (375)
++++..+.++.+.+.|++.+-|-.+..+.+ ..+.+.-.+.|++|++.. |++.+.+ |..+ +. +.++.+...
T Consensus 139 ~~~~~~~~a~~~~~~Gf~~~Kik~g~~~~~-~~~~~~d~~~v~~ir~~~g~~~~l~v---DaN~~~~~~~a~~~~~~l-- 212 (357)
T cd03316 139 SPEELAEEAKRAVAEGFTAVKLKVGGPDSG-GEDLREDLARVRAVREAVGPDVDLMV---DANGRWDLAEAIRLARAL-- 212 (357)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEcCCCCCcc-hHHHHHHHHHHHHHHHhhCCCCEEEE---ECCCCCCHHHHHHHHHHh--
Confidence 578888999999999999888864432211 011344578888998876 4554433 2221 32 333332221
Q ss_pred ccccccccchHHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcCCcEEeeecCC
Q 017200 234 NVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQYM 313 (375)
Q Consensus 234 dv~~hnlEtv~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~tkt~imvGlGET~ee~~etl~~Lrelgvd~v~i~qYl 313 (375)
+-+ +++-+++- +. .. .++.++.+++. +++=+..+|+..+..+..+.+++-.+|++.+-
T Consensus 213 ~~~--~i~~iEqP---~~--~~----~~~~~~~l~~~--------~~ipi~~dE~~~~~~~~~~~i~~~~~d~v~~k--- 270 (357)
T cd03316 213 EEY--DLFWFEEP---VP--PD----DLEGLARLRQA--------TSVPIAAGENLYTRWEFRDLLEAGAVDIIQPD--- 270 (357)
T ss_pred Ccc--CCCeEcCC---CC--cc----CHHHHHHHHHh--------CCCCEEeccccccHHHHHHHHHhCCCCEEecC---
Confidence 111 12222210 11 11 23445555552 12334457777776666666666677877662
Q ss_pred CCCCCCCCccccCCHHHHHHHHHHHHHhhhhhh
Q 017200 314 RPSKRHMPVSEYITPEAFERYRALGMEMGFRYV 346 (375)
Q Consensus 314 ~P~~~~~~v~~~v~pe~~~~l~~~a~~~gf~~~ 346 (375)
|.+-+ . ..+..++..+|.+.|....
T Consensus 271 -~~~~G----G---i~~~~~i~~~a~~~g~~~~ 295 (357)
T cd03316 271 -VTKVG----G---ITEAKKIAALAEAHGVRVA 295 (357)
T ss_pred -ccccC----C---HHHHHHHHHHHHHcCCeEe
Confidence 21111 1 2235556667777776644
No 452
>TIGR01334 modD putative molybdenum utilization protein ModD. The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown.
Probab=59.00 E-value=52 Score=32.26 Aligned_cols=66 Identities=12% Similarity=0.173 Sum_probs=48.1
Q ss_pred HHHHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCCCcEEEeecCCCCCChHHHHHHHHcCcccccc
Q 017200 162 PTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAH 238 (375)
Q Consensus 162 i~~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGldv~~h 238 (375)
-++.++++.+.|++.|.|= .+. .+.+.+.++.+++..|++.+++.- .. +.+.+..+...|+|++.-
T Consensus 197 tleea~ea~~~GaDiI~lD-----n~~---~e~l~~~v~~l~~~~~~~~leasG-GI--~~~ni~~ya~~GvD~is~ 262 (277)
T TIGR01334 197 TIEQALTVLQASPDILQLD-----KFT---PQQLHHLHERLKFFDHIPTLAAAG-GI--NPENIADYIEAGIDLFIT 262 (277)
T ss_pred CHHHHHHHHHcCcCEEEEC-----CCC---HHHHHHHHHHHhccCCCEEEEEEC-CC--CHHHHHHHHhcCCCEEEe
Confidence 3455666678888888754 222 466788888887767888887653 33 789999999999998754
No 453
>TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase. A closely related enzyme, phosphonopyruvate hydrolase from Variovorax sp. Pal2, is excluded from this model.
Probab=58.86 E-value=35 Score=33.58 Aligned_cols=74 Identities=22% Similarity=0.292 Sum_probs=48.1
Q ss_pred CcchHHHHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCCCcEEEeecCCCCCChHHHHHHHHcCccccc
Q 017200 158 DPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFA 237 (375)
Q Consensus 158 d~eEi~~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGldv~~ 237 (375)
..+|.++.+++.++.|.+-|.+-++.. + .+.+.++++.++..+|.+.+- ..|.-. ..-.+++|.+.|.+++.
T Consensus 167 ~~~eAi~Ra~ay~eAGAD~ifv~~~~~----~--~~ei~~~~~~~~~~~p~~pl~-~~~~~~-~~~~~~eL~~lG~~~v~ 238 (285)
T TIGR02320 167 GMEDALKRAEAYAEAGADGIMIHSRKK----D--PDEILEFARRFRNHYPRTPLV-IVPTSY-YTTPTDEFRDAGISVVI 238 (285)
T ss_pred CHHHHHHHHHHHHHcCCCEEEecCCCC----C--HHHHHHHHHHhhhhCCCCCEE-EecCCC-CCCCHHHHHHcCCCEEE
Confidence 367888888888999998888764321 1 345677777777656655442 223100 11247889999999876
Q ss_pred cc
Q 017200 238 HN 239 (375)
Q Consensus 238 hn 239 (375)
+.
T Consensus 239 ~~ 240 (285)
T TIGR02320 239 YA 240 (285)
T ss_pred Eh
Confidence 64
No 454
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=58.79 E-value=39 Score=33.01 Aligned_cols=65 Identities=22% Similarity=0.257 Sum_probs=45.8
Q ss_pred HHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCCCcEEEeecCCCCCChHHHHHHHHcCccccccc
Q 017200 164 NVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHN 239 (375)
Q Consensus 164 ~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGldv~~hn 239 (375)
+++..+.+.|++.|.| |..+ .+.+.+.++.++...|++.+++. +.. +++.+..+.+.|+|++..+
T Consensus 193 eea~~A~~~GaDiI~L---Dn~~-----~e~l~~~v~~~~~~~~~~~ieAs-GgI--t~~ni~~ya~~GvD~IsvG 257 (273)
T PRK05848 193 EEAKNAMNAGADIVMC---DNMS-----VEEIKEVVAYRNANYPHVLLEAS-GNI--TLENINAYAKSGVDAISSG 257 (273)
T ss_pred HHHHHHHHcCCCEEEE---CCCC-----HHHHHHHHHHhhccCCCeEEEEE-CCC--CHHHHHHHHHcCCCEEEeC
Confidence 4455566889987764 2222 55677788777666688877765 334 7899999999999988654
No 455
>cd06557 KPHMT-like Ketopantoate hydroxymethyltransferase (KPHMT) is the first enzyme in the pantothenate biosynthesis pathway. Ketopantoate hydroxymethyltransferase (KPHMT) catalyzes the first committed step in the biosynthesis of pantothenate (vitamin B5), which is a precursor to coenzyme A and is required for penicillin biosynthesis.
Probab=58.50 E-value=92 Score=30.13 Aligned_cols=15 Identities=20% Similarity=0.339 Sum_probs=9.2
Q ss_pred HHHHHhcCCcEEEEEe
Q 017200 166 AEAIASWGLDYVVITS 181 (375)
Q Consensus 166 a~al~~~G~~eIvLTs 181 (375)
|+.+.+.|++-|. ||
T Consensus 25 A~l~e~aG~d~i~-vG 39 (254)
T cd06557 25 AKLADEAGVDVIL-VG 39 (254)
T ss_pred HHHHHHcCCCEEE-EC
Confidence 4555666777774 44
No 456
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=58.44 E-value=53 Score=33.30 Aligned_cols=48 Identities=13% Similarity=0.135 Sum_probs=23.4
Q ss_pred CCcchHHHHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCCC
Q 017200 157 PDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPN 208 (375)
Q Consensus 157 ld~eEi~~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p~ 208 (375)
.+++.+.+.++++.+.|++.|.|-=-..- .....+.++++.|++.+|.
T Consensus 194 ~~~~~l~~~~~~~~~~Gad~I~l~DT~G~----a~P~~v~~lv~~l~~~~~~ 241 (347)
T PLN02746 194 VPPSKVAYVAKELYDMGCYEISLGDTIGV----GTPGTVVPMLEAVMAVVPV 241 (347)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEecCCcCC----cCHHHHHHHHHHHHHhCCC
Confidence 34556666666666666665554310000 0123455566666555543
No 457
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=58.20 E-value=87 Score=24.40 Aligned_cols=39 Identities=13% Similarity=0.380 Sum_probs=30.2
Q ss_pred HHHHHHHHHhCCCcEEEeecCCCCCChHHHHHHHHcCcccc
Q 017200 196 AQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVF 236 (375)
Q Consensus 196 ~~lir~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGldv~ 236 (375)
.++++.|++..|.+.+-+++... +.+....+.++|++-|
T Consensus 59 ~~~~~~i~~~~~~~~ii~~t~~~--~~~~~~~~~~~g~~~~ 97 (112)
T PF00072_consen 59 LELLEQIRQINPSIPIIVVTDED--DSDEVQEALRAGADDY 97 (112)
T ss_dssp HHHHHHHHHHTTTSEEEEEESST--SHHHHHHHHHTTESEE
T ss_pred cccccccccccccccEEEecCCC--CHHHHHHHHHCCCCEE
Confidence 57788888877888888777655 6677888889997755
No 458
>PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D ....
Probab=58.11 E-value=1.3e+02 Score=27.29 Aligned_cols=90 Identities=19% Similarity=0.281 Sum_probs=53.6
Q ss_pred HHHHHHHHHHhCCCcE-EEeecCCCCCChHHHHHHHHcCcccccccccchHHHHHHhcCCCCCHHHHHHHHHHHHHhCCC
Q 017200 195 FAQTVRKLKELKPNML-IEALVPDFRGNNGCVREVAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPA 273 (375)
Q Consensus 195 ~~~lir~Ik~~~p~i~-Ie~l~pd~~g~~e~l~~L~~aGldv~~hnlEtv~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~ 273 (375)
+.+.++++++..|... |++-.- +.+.+++..++|+|++-. .+-+.++.-++++.+++..|.
T Consensus 66 i~~av~~~~~~~~~~~~I~VEv~----~~ee~~ea~~~g~d~I~l--------------D~~~~~~~~~~v~~l~~~~~~ 127 (169)
T PF01729_consen 66 IEEAVKAARQAAPEKKKIEVEVE----NLEEAEEALEAGADIIML--------------DNMSPEDLKEAVEELRELNPR 127 (169)
T ss_dssp HHHHHHHHHHHSTTTSEEEEEES----SHHHHHHHHHTT-SEEEE--------------ES-CHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHhCCCCceEEEEcC----CHHHHHHHHHhCCCEEEe--------------cCcCHHHHHHHHHHHhhcCCc
Confidence 4577778888776542 443221 567888999999998743 134567777777777776554
Q ss_pred CceEEEeEEEecCCCHHHHHHHHHHHHHcCCcEEeeec
Q 017200 274 GTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQ 311 (375)
Q Consensus 274 Gl~tkt~imvGlGET~ee~~etl~~Lrelgvd~v~i~q 311 (375)
+.+-.+- |=|.+.+ ..+.+.|+|++.+|-
T Consensus 128 -v~ie~SG----GI~~~ni----~~ya~~gvD~isvg~ 156 (169)
T PF01729_consen 128 -VKIEASG----GITLENI----AEYAKTGVDVISVGS 156 (169)
T ss_dssp -SEEEEES----SSSTTTH----HHHHHTT-SEEEECH
T ss_pred -EEEEEEC----CCCHHHH----HHHHhcCCCEEEcCh
Confidence 3332211 2344333 334578999998874
No 459
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=58.00 E-value=47 Score=31.12 Aligned_cols=78 Identities=17% Similarity=0.167 Sum_probs=45.7
Q ss_pred CCcchHHHHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCCCcEEEe-ecCCCCCChHHHHHHHHcCccc
Q 017200 157 PDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEA-LVPDFRGNNGCVREVAKSGLNV 235 (375)
Q Consensus 157 ld~eEi~~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p~i~Ie~-l~pd~~g~~e~l~~L~~aGldv 235 (375)
.+++++.+.++.+.+.|++.|.|.--..-.. ...+.++++.+++..|++.+++ .+-++.--......-.++|++.
T Consensus 143 ~~~~~l~~~~~~~~~~g~~~i~l~Dt~G~~~----P~~v~~li~~l~~~~~~~~~~~H~Hn~~gla~an~laA~~aG~~~ 218 (265)
T cd03174 143 TDPEYVLEVAKALEEAGADEISLKDTVGLAT----PEEVAELVKALREALPDVPLGLHTHNTLGLAVANSLAALEAGADR 218 (265)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEechhcCCcC----HHHHHHHHHHHHHhCCCCeEEEEeCCCCChHHHHHHHHHHcCCCE
Confidence 4578888888888888888887642111111 3457788888888777666553 2222210122223334678776
Q ss_pred ccc
Q 017200 236 FAH 238 (375)
Q Consensus 236 ~~h 238 (375)
+..
T Consensus 219 id~ 221 (265)
T cd03174 219 VDG 221 (265)
T ss_pred EEe
Confidence 643
No 460
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=57.90 E-value=1.8e+02 Score=28.54 Aligned_cols=143 Identities=18% Similarity=0.242 Sum_probs=82.7
Q ss_pred CCcchHHHHHHHHHhcCCcEEEEEeeeCCCCCcc-------------c--HHHHHHHHHHHHHhCCCcEEEeec---CCC
Q 017200 157 PDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQ-------------G--SGHFAQTVRKLKELKPNMLIEALV---PDF 218 (375)
Q Consensus 157 ld~eEi~~~a~al~~~G~~eIvLTsgdr~dl~d~-------------G--~~~~~~lir~Ik~~~p~i~Ie~l~---pd~ 218 (375)
.+++.-++.++.+.+.|++-+-|=----|-+.|| | .+...++++.+++..+.+.+-+++ |-|
T Consensus 28 P~~e~s~e~i~~L~~~GaD~iELGvPfSDPvADGP~Iq~A~~rAL~~g~t~~~~lel~~~~r~~~~~~Pivlm~Y~Npi~ 107 (265)
T COG0159 28 PDLETSLEIIKTLVEAGADILELGVPFSDPVADGPTIQAAHLRALAAGVTLEDTLELVEEIRAKGVKVPIVLMTYYNPIF 107 (265)
T ss_pred CCHHHHHHHHHHHHhCCCCEEEecCCCCCcCccCHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCCCCEEEEEeccHHH
Confidence 3578888999999999998776532222223332 1 356778888888766665554433 323
Q ss_pred -CCChHHHHHHHHcCcccccc---cccchHHHHHHhcC---------CCCCHHHHHHHHHHHHHhCCCCce--EEEeEEE
Q 017200 219 -RGNNGCVREVAKSGLNVFAH---NIETVEELQSAVRD---------HRANFKQSLDVLMMAKDYVPAGTL--TKTSIML 283 (375)
Q Consensus 219 -~g~~e~l~~L~~aGldv~~h---nlEtv~rl~~~mr~---------r~~s~~~~l~vl~~ak~~~p~Gl~--tkt~imv 283 (375)
.|.+.-++.++++|+|.+-. -+|..+++.+.... ..-+-+++++.+...-+ |+. +...-.-
T Consensus 108 ~~Gie~F~~~~~~~GvdGlivpDLP~ee~~~~~~~~~~~gi~~I~lvaPtt~~~rl~~i~~~a~----GFiY~vs~~GvT 183 (265)
T COG0159 108 NYGIEKFLRRAKEAGVDGLLVPDLPPEESDELLKAAEKHGIDPIFLVAPTTPDERLKKIAEAAS----GFIYYVSRMGVT 183 (265)
T ss_pred HhhHHHHHHHHHHcCCCEEEeCCCChHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHhCC----CcEEEEeccccc
Confidence 23455688999999986532 24555555544331 12344566666655544 442 2222333
Q ss_pred ec-CCCHHHHHHHHHHHHHcC
Q 017200 284 GC-GETPDQVVSTMEKVRAAG 303 (375)
Q Consensus 284 Gl-GET~ee~~etl~~Lrelg 303 (375)
|- .+....+.+.++.+|+.-
T Consensus 184 G~~~~~~~~~~~~v~~vr~~~ 204 (265)
T COG0159 184 GARNPVSADVKELVKRVRKYT 204 (265)
T ss_pred CCCcccchhHHHHHHHHHHhc
Confidence 43 232335777778888754
No 461
>TIGR01334 modD putative molybdenum utilization protein ModD. The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown.
Probab=57.90 E-value=87 Score=30.75 Aligned_cols=90 Identities=13% Similarity=0.163 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHhCCCcEEEeecCCCCCChHHHHHHHHcCcccccccccchHHHHHHhcCCCCCHHHHHHHHHHHHHhCCC
Q 017200 194 HFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPA 273 (375)
Q Consensus 194 ~~~~lir~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGldv~~hnlEtv~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~ 273 (375)
.+.+.++.+|+..|...|++=.. +.+.+.+..++|+|++-. .+-+.++-.+.++.+++..|.
T Consensus 174 ~i~~av~~~r~~~~~~kIeVEv~----tleea~ea~~~GaDiI~l--------------Dn~~~e~l~~~v~~l~~~~~~ 235 (277)
T TIGR01334 174 DWGGAIGRLKQTAPERKITVEAD----TIEQALTVLQASPDILQL--------------DKFTPQQLHHLHERLKFFDHI 235 (277)
T ss_pred cHHHHHHHHHHhCCCCCEEEECC----CHHHHHHHHHcCcCEEEE--------------CCCCHHHHHHHHHHHhccCCC
Confidence 36788888888776554444322 678899999999998743 245567766777766643332
Q ss_pred CceEEEeEEEecCCCHHHHHHHHHHHHHcCCcEEeee
Q 017200 274 GTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFG 310 (375)
Q Consensus 274 Gl~tkt~imvGlGET~ee~~etl~~Lrelgvd~v~i~ 310 (375)
+.+..+ =|=|.+. +....+.|+|++..+
T Consensus 236 -~~leas----GGI~~~n----i~~ya~~GvD~is~g 263 (277)
T TIGR01334 236 -PTLAAA----GGINPEN----IADYIEAGIDLFITS 263 (277)
T ss_pred -EEEEEE----CCCCHHH----HHHHHhcCCCEEEeC
Confidence 222111 1335544 455678899998886
No 462
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=57.88 E-value=73 Score=31.61 Aligned_cols=103 Identities=12% Similarity=0.184 Sum_probs=59.9
Q ss_pred cchHHHHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCCCcEEEeecCCCCCChHHHHHH-HHcCccccc
Q 017200 159 PDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREV-AKSGLNVFA 237 (375)
Q Consensus 159 ~eEi~~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L-~~aGldv~~ 237 (375)
.++..+.++.+.+.|++.|.+.+..+.....+...++ +.+++|++.. ++.|- ..+|.. +.+.++.+ ...|+|.+-
T Consensus 147 ~~~~~~~a~~l~~~Gvd~i~Vh~Rt~~~~y~g~~~~~-~~i~~ik~~~-~iPVi-~nGdI~-t~~da~~~l~~~g~DgVm 222 (312)
T PRK10550 147 GERKFEIADAVQQAGATELVVHGRTKEDGYRAEHINW-QAIGEIRQRL-TIPVI-ANGEIW-DWQSAQQCMAITGCDAVM 222 (312)
T ss_pred chHHHHHHHHHHhcCCCEEEECCCCCccCCCCCcccH-HHHHHHHhhc-CCcEE-EeCCcC-CHHHHHHHHhccCCCEEE
Confidence 3567888999999999999998876543221111122 6788888754 34442 345554 55555554 467888776
Q ss_pred cc--ccchHHHHHHhcC--CCCCHHHHHHHHH
Q 017200 238 HN--IETVEELQSAVRD--HRANFKQSLDVLM 265 (375)
Q Consensus 238 hn--lEtv~rl~~~mr~--r~~s~~~~l~vl~ 265 (375)
.+ +=.-+.++++++. ...++++.++++.
T Consensus 223 iGRg~l~nP~lf~~~~~g~~~~~~~e~~~~~~ 254 (312)
T PRK10550 223 IGRGALNIPNLSRVVKYNEPRMPWPEVVALLQ 254 (312)
T ss_pred EcHHhHhCcHHHHHhhcCCCCCCHHHHHHHHH
Confidence 55 1122466665541 1234555544443
No 463
>COG0352 ThiE Thiamine monophosphate synthase [Coenzyme metabolism]
Probab=57.88 E-value=1.7e+02 Score=27.57 Aligned_cols=110 Identities=16% Similarity=0.254 Sum_probs=61.2
Q ss_pred HHHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCCCcEEEeecCCCCCChHHHHHHHHcCcccccccccc
Q 017200 163 TNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIET 242 (375)
Q Consensus 163 ~~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGldv~~hnlEt 242 (375)
.+.++++.+.|++-+.|=-- +.. ...+.+..++++...-.-.+.+++-| .++.-.+.|.|.++.+.|-
T Consensus 24 ~~~ve~al~~Gv~~vQlR~K---~~~---~~~~~~~a~~~~~lc~~~~v~liINd------~~dlA~~~~AdGVHlGq~D 91 (211)
T COG0352 24 LEWVEAALKGGVTAVQLREK---DLS---DEEYLALAEKLRALCQKYGVPLIIND------RVDLALAVGADGVHLGQDD 91 (211)
T ss_pred HHHHHHHHhCCCeEEEEecC---CCC---hHHHHHHHHHHHHHHHHhCCeEEecC------cHHHHHhCCCCEEEcCCcc
Confidence 78888899999887765421 111 12223344444332212223334433 3455557888888776552
Q ss_pred hHHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEec-CCCHHHHHHHHHHHHHcCCcEEeeecCC
Q 017200 243 VEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGC-GETPDQVVSTMEKVRAAGVDVMTFGQYM 313 (375)
Q Consensus 243 v~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~tkt~imvGl-GET~ee~~etl~~Lrelgvd~v~i~qYl 313 (375)
.+ +..+++.+ ..++|+|+ .-+.||..+ ..++++|+|.+|+.+
T Consensus 92 ~~-------------------~~~ar~~~------~~~~iIG~S~h~~eea~~----A~~~g~DYv~~Gpif 134 (211)
T COG0352 92 MP-------------------LAEARELL------GPGLIIGLSTHDLEEALE----AEELGADYVGLGPIF 134 (211)
T ss_pred cc-------------------hHHHHHhc------CCCCEEEeecCCHHHHHH----HHhcCCCEEEECCcC
Confidence 11 12233322 33467777 456666544 456789999999887
No 464
>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial. A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.
Probab=57.87 E-value=54 Score=32.88 Aligned_cols=130 Identities=15% Similarity=0.232 Sum_probs=76.3
Q ss_pred cchHHHHHHHHHhcC--CcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCCCcEEEeecCCCCCChHHHHHHHHcCcccc
Q 017200 159 PDEPTNVAEAIASWG--LDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVF 236 (375)
Q Consensus 159 ~eEi~~~a~al~~~G--~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGldv~ 236 (375)
+++. +.+.++.+.| .+.|++-.-+ +-.....+.|+.|++.+|...| +.++. ++.+..+.|.++|+|.+
T Consensus 93 ~e~~-~r~~~lv~a~~~~d~i~~D~ah------g~s~~~~~~i~~i~~~~p~~~v--i~GnV-~t~e~a~~l~~aGad~I 162 (321)
T TIGR01306 93 ACEY-EFVTQLAEEALTPEYITIDIAH------GHSNSVINMIKHIKTHLPDSFV--IAGNV-GTPEAVRELENAGADAT 162 (321)
T ss_pred HHHH-HHHHHHHhcCCCCCEEEEeCcc------CchHHHHHHHHHHHHhCCCCEE--EEecC-CCHHHHHHHHHcCcCEE
Confidence 4444 4556677778 4887765433 2256789999999998886533 33333 27889999999999987
Q ss_pred ccc-----ccchHHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEE-ecCCCHHHHHHHHHHHHHcCCcEEeee
Q 017200 237 AHN-----IETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIML-GCGETPDQVVSTMEKVRAAGVDVMTFG 310 (375)
Q Consensus 237 ~hn-----lEtv~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~tkt~imv-GlGET~ee~~etl~~Lrelgvd~v~i~ 310 (375)
-.+ +-+.+. ...-+.. ..-+..+..+++.. . ++ +|. |=-.+-.|+...|. +|.|.+-++
T Consensus 163 ~V~~G~G~~~~tr~----~~g~g~~-~~~l~ai~ev~~a~-~-~p----VIadGGIr~~~Di~KALa----~GAd~Vmig 227 (321)
T TIGR01306 163 KVGIGPGKVCITKI----KTGFGTG-GWQLAALRWCAKAA-R-KP----IIADGGIRTHGDIAKSIR----FGASMVMIG 227 (321)
T ss_pred EECCCCCcccccee----eeccCCC-chHHHHHHHHHHhc-C-Ce----EEEECCcCcHHHHHHHHH----cCCCEEeec
Confidence 433 222221 1101111 11145666666632 1 22 221 11356677776664 599999888
Q ss_pred cCC
Q 017200 311 QYM 313 (375)
Q Consensus 311 qYl 313 (375)
..+
T Consensus 228 ~~~ 230 (321)
T TIGR01306 228 SLF 230 (321)
T ss_pred hhh
Confidence 665
No 465
>PRK12656 fructose-6-phosphate aldolase; Reviewed
Probab=57.80 E-value=1.2e+02 Score=28.71 Aligned_cols=95 Identities=15% Similarity=0.088 Sum_probs=51.2
Q ss_pred HHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCCCcEEEeecCCCCCChHHHHHHHHcCcccccccccchHHHH
Q 017200 168 AIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETVEELQ 247 (375)
Q Consensus 168 al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGldv~~hnlEtv~rl~ 247 (375)
.+...|..||-.=-|--+|....|...+.++.+.++...+++.| +...++ +.+.+..+..+|+|.+... +.++
T Consensus 121 ~Aa~aGa~yvsPyvgRi~d~g~D~~~~i~~i~~~~~~~~~~tkI--LaAS~r-~~~~v~~a~~~G~d~vTvp----~~vl 193 (222)
T PRK12656 121 LAIEAGADYLAPYYNRMENLNIDSNAVIGQLAEAIDRENSDSKI--LAASFK-NVAQVNKAFALGAQAVTAG----PDVF 193 (222)
T ss_pred HHHHCCCCEEecccchhhhcCCCHHHHHHHHHHHHHhcCCCCEE--EEEecC-CHHHHHHHHHcCCCEEecC----HHHH
Confidence 34457887775444433444322444445555555554444443 444444 6778888888999988543 3677
Q ss_pred HHhcCCCCCHHHHHHHHHHHHH
Q 017200 248 SAVRDHRANFKQSLDVLMMAKD 269 (375)
Q Consensus 248 ~~mr~r~~s~~~~l~vl~~ak~ 269 (375)
.+|-....+-+..-+..+.+++
T Consensus 194 ~~l~~~p~t~~~~~~F~~dw~~ 215 (222)
T PRK12656 194 EAAFAMPSIQKAVDDFADDWEA 215 (222)
T ss_pred HHHhcCCcHHHHHHHHHHHHHH
Confidence 6664223333333333344444
No 466
>PLN02495 oxidoreductase, acting on the CH-CH group of donors
Probab=57.80 E-value=98 Score=31.82 Aligned_cols=57 Identities=25% Similarity=0.367 Sum_probs=43.2
Q ss_pred CCHHHHHHHHHHHHHhCCCCceEEEeEEEecC-CCHHHHHHHHHHHHHcCCcEEeeecCCCCC
Q 017200 255 ANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCG-ETPDQVVSTMEKVRAAGVDVMTFGQYMRPS 316 (375)
Q Consensus 255 ~s~~~~l~vl~~ak~~~p~Gl~tkt~imvGlG-ET~ee~~etl~~Lrelgvd~v~i~qYl~P~ 316 (375)
...+.|++.+..+++..|. .++=.+|| | .+.+|..+.++.+.+.|+|.+-+ ++.-|.
T Consensus 95 ~g~~~~l~~i~~~k~~~~~-~pvIaSi~---~~~s~~~~~~~a~~~e~~GaD~iEL-NiSCPn 152 (385)
T PLN02495 95 RPFETMLAEFKQLKEEYPD-RILIASIM---EEYNKDAWEEIIERVEETGVDALEI-NFSCPH 152 (385)
T ss_pred cCHHHHHHHHHHHHhhCCC-CcEEEEcc---CCCCHHHHHHHHHHHHhcCCCEEEE-ECCCCC
Confidence 4578888888888775544 44444443 4 68899999999999999999988 676663
No 467
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=57.80 E-value=42 Score=32.16 Aligned_cols=72 Identities=17% Similarity=0.265 Sum_probs=47.8
Q ss_pred cchHHHHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCCCcEEEeecCCCCCChHHHHHHH-HcCcccc
Q 017200 159 PDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVA-KSGLNVF 236 (375)
Q Consensus 159 ~eEi~~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~-~aGldv~ 236 (375)
...+.+.++.+.+.|+.++++|+.+++... .|. -.+.++.+++.. .+.|-+. ++.. +.+.+..+. ..|+|.+
T Consensus 151 ~~~~~e~~~~~~~~g~~~ii~~~i~~~G~~-~G~--d~~~i~~~~~~~-~ipvIas-GGv~-s~eD~~~l~~~~GvdgV 223 (258)
T PRK01033 151 KKDPLELAKEYEALGAGEILLNSIDRDGTM-KGY--DLELLKSFRNAL-KIPLIAL-GGAG-SLDDIVEAILNLGADAA 223 (258)
T ss_pred CCCHHHHHHHHHHcCCCEEEEEccCCCCCc-CCC--CHHHHHHHHhhC-CCCEEEe-CCCC-CHHHHHHHHHHCCCCEE
Confidence 345677788888999999999999876432 233 256677777653 3444332 2332 677777776 7898854
No 468
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=57.76 E-value=1e+02 Score=30.64 Aligned_cols=85 Identities=13% Similarity=0.136 Sum_probs=54.9
Q ss_pred HHHHHHHcCcccccccccch-HHHHHHhcC--CCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHH
Q 017200 224 CVREVAKSGLNVFAHNIETV-EELQSAVRD--HRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVR 300 (375)
Q Consensus 224 ~l~~L~~aGldv~~hnlEtv-~rl~~~mr~--r~~s~~~~l~vl~~ak~~~p~Gl~tkt~imvGlGET~ee~~etl~~Lr 300 (375)
..+.+.+.|.|.+..|+-.- +.+.+.-.+ --.+.+...++++.+++.. ++++..-|=.|.-++.++.++.++.+.
T Consensus 82 aa~~~~~~g~d~IdlN~gCP~~~v~~~g~Gs~ll~~p~~~~eiv~av~~a~--d~pv~vKiR~G~~~~~~~~~~~a~~le 159 (321)
T PRK10415 82 AARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDLVKSILTEVVNAV--DVPVTLKIRTGWAPEHRNCVEIAQLAE 159 (321)
T ss_pred HHHHHHHCCCCEEEEeCCCCHHHHcCCCcccHHhcCHHHHHHHHHHHHHhc--CCceEEEEEccccCCcchHHHHHHHHH
Confidence 34556678889888887642 222221000 0123677778888887754 134444444677666678889999999
Q ss_pred HcCCcEEeee
Q 017200 301 AAGVDVMTFG 310 (375)
Q Consensus 301 elgvd~v~i~ 310 (375)
+.|++.+++.
T Consensus 160 ~~G~d~i~vh 169 (321)
T PRK10415 160 DCGIQALTIH 169 (321)
T ss_pred HhCCCEEEEe
Confidence 9999999885
No 469
>PF03740 PdxJ: Pyridoxal phosphate biosynthesis protein PdxJ; InterPro: IPR004569 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. In Escherichia coli, the pdx genes involved in vitamin B6 have been characterised [, , ]. This entry represents PdxJ, which catalyses the condensation of 1-amino-3-oxo-4-(phosphohydroxy)propan-2-one and 1-deoxy-D-xylulose-5-phosphate to form pyridoxine-5'-phosphate. The product of the PdxJ reaction is then oxidized by PdxH to pyridoxal 5'-phosphate.; GO: 0008615 pyridoxine biosynthetic process, 0005737 cytoplasm; PDB: 3F4N_B 3O6D_A 3O6C_A 1M5W_G 1IXQ_D 1IXP_B 1IXN_A 1HO4_C 1HO1_A 1IXO_D ....
Probab=57.69 E-value=57 Score=31.41 Aligned_cols=134 Identities=13% Similarity=0.261 Sum_probs=69.5
Q ss_pred cchHHHHHHHHHhcCCcEEEEEeeeCCCCC-ccc------HHHHHHHHHHHHHhCCCcEEEeecCCCCCChHHHHHHHHc
Q 017200 159 PDEPTNVAEAIASWGLDYVVITSVDRDDLA-DQG------SGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKS 231 (375)
Q Consensus 159 ~eEi~~~a~al~~~G~~eIvLTsgdr~dl~-d~G------~~~~~~lir~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~a 231 (375)
.+|+++.|..++- +.++|+=-.+..+. ++| .+.+.++++.++.. ++++.+++-. +.++++.-++.
T Consensus 73 t~e~~~ia~~~kP---~~vtLVPE~r~e~TTegGldv~~~~~~l~~~i~~L~~~--gIrvSLFiDP---~~~qi~~A~~~ 144 (239)
T PF03740_consen 73 TEEMVDIALKVKP---DQVTLVPEKREELTTEGGLDVAGNRDRLKPVIKRLKDA--GIRVSLFIDP---DPEQIEAAKEL 144 (239)
T ss_dssp SHHHHHHHHHH-----SEEEEE--SGGGBSTTSSB-TCGGHHHHHHHHHHHHHT--T-EEEEEE-S----HHHHHHHHHT
T ss_pred CHHHHHHHHhCCc---CEEEECCCCCCCcCCCcCChhhcCHHHHHHHHHHHHhC--CCEEEEEeCC---CHHHHHHHHHc
Confidence 4788888876654 57777644433331 222 46788889999874 7999887632 57899999999
Q ss_pred CcccccccccchHHHHHHhcCCCCC--HHHHHHHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcCCcEEee
Q 017200 232 GLNVFAHNIETVEELQSAVRDHRAN--FKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTF 309 (375)
Q Consensus 232 Gldv~~hnlEtv~rl~~~mr~r~~s--~~~~l~vl~~ak~~~p~Gl~tkt~imvGlGET~ee~~etl~~Lrelgvd~v~i 309 (375)
|.|.+...-...-..+..-. +... +++..+..+.|++ .|+.+.+ |+|=+-+.+... ++--++.-++|
T Consensus 145 Gad~VELhTG~yA~a~~~~~-~~~~ell~~l~~aa~~a~~---lGL~VnA----GHgL~y~N~~~i---~~i~~i~EvnI 213 (239)
T PF03740_consen 145 GADRVELHTGPYANAFDDAE-EAEEELLERLRDAARYAHE---LGLGVNA----GHGLNYDNVRPI---AAIPPIEEVNI 213 (239)
T ss_dssp T-SEEEEETHHHHHHSSHHH-HHHHHHHHHHHHHHHHHHH---TT-EEEE----ETT--TTTHHHH---HTSTTEEEEEE
T ss_pred CCCEEEEehhHhhhhcCCHH-HHHHHHHHHHHHHHHHHHH---cCCEEec----CCCCCHHHHHHH---HhCCCceEEec
Confidence 99987543111111110000 0000 3445556666666 4666554 666555443322 22234566777
Q ss_pred ec
Q 017200 310 GQ 311 (375)
Q Consensus 310 ~q 311 (375)
|.
T Consensus 214 GH 215 (239)
T PF03740_consen 214 GH 215 (239)
T ss_dssp -H
T ss_pred CH
Confidence 63
No 470
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=57.54 E-value=1.7e+02 Score=27.69 Aligned_cols=67 Identities=12% Similarity=0.264 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHhCCCcEEEeecCCCC-CChHHHHHHHHcCcccccccccchHHHHHHhcCCCCCHHHHHHHHHHHHH
Q 017200 194 HFAQTVRKLKELKPNMLIEALVPDFR-GNNGCVREVAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKD 269 (375)
Q Consensus 194 ~~~~lir~Ik~~~p~i~Ie~l~pd~~-g~~e~l~~L~~aGldv~~hnlEtv~rl~~~mr~r~~s~~~~l~vl~~ak~ 269 (375)
...+.++.+++..++..|. . ++- .+.+.++.+.++|+|.+-.+ ..+++.+.. .+.+...+.++.+++
T Consensus 171 ~~~~~i~~lr~~~~~~~i~--v-~gGI~~~e~i~~~~~~gaD~vvvG----Sai~~~~~~--~~~~~~~~~~~~~~~ 238 (244)
T PRK13125 171 SVERNIKRVRNLVGNKYLV--V-GFGLDSPEDARDALSAGADGVVVG----TAFIEELEK--NGVESALNLLKKIRG 238 (244)
T ss_pred HHHHHHHHHHHhcCCCCEE--E-eCCcCCHHHHHHHHHcCCCEEEEC----HHHHHHHHh--cCHHHHHHHHHHHHH
Confidence 3455667777655433222 1 221 16778888888888866443 334444431 235555555555554
No 471
>COG3010 NanE Putative N-acetylmannosamine-6-phosphate epimerase [Carbohydrate transport and metabolism]
Probab=57.52 E-value=14 Score=34.95 Aligned_cols=135 Identities=21% Similarity=0.321 Sum_probs=68.6
Q ss_pred CCCcchH-HHHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCCCcE-EEeecCCC-------CCChHHHH
Q 017200 156 PPDPDEP-TNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNML-IEALVPDF-------RGNNGCVR 226 (375)
Q Consensus 156 ~ld~eEi-~~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p~i~-Ie~l~pd~-------~g~~e~l~ 226 (375)
+|+-.++ ...|.+..+.|..-|.+-|+. -|++|++.. ++. |.+.--|+ ....+.++
T Consensus 28 pl~~~~iv~~mA~Aa~~gGAvgiR~~gv~--------------dIkai~~~v-~vPIIGIiKrd~~~s~v~ITptlkeVd 92 (229)
T COG3010 28 PLDSPEIVAAMALAAEQGGAVGIRIEGVE--------------DIKAIRAVV-DVPIIGIIKRDYPDSPVRITPTLKEVD 92 (229)
T ss_pred CCcchhHHHHHHHHHHhCCcceEeecchh--------------hHHHHHhhC-CCCeEEEEecCCCCCCceecccHHHHH
Confidence 4544444 556777778888777665442 244454433 111 11111111 11467899
Q ss_pred HHHHcCcccccccc-------cchHHHHHHhcCC-------CCCHHHHHHHHHHHHHhCCCCceEEEeEEEec-CCCH--
Q 017200 227 EVAKSGLNVFAHNI-------ETVEELQSAVRDH-------RANFKQSLDVLMMAKDYVPAGTLTKTSIMLGC-GETP-- 289 (375)
Q Consensus 227 ~L~~aGldv~~hnl-------Etv~rl~~~mr~r-------~~s~~~~l~vl~~ak~~~p~Gl~tkt~imvGl-GET~-- 289 (375)
.|.++|+++++.-. ++.+++..+.+.+ -.++++-+ .|++ .|+-+-.+-|.|. +++.
T Consensus 93 ~L~~~Ga~IIA~DaT~R~RP~~~~~~~i~~~k~~~~l~MAD~St~ee~l----~a~~---~G~D~IGTTLsGYT~~~~~~ 165 (229)
T COG3010 93 ALAEAGADIIAFDATDRPRPDGDLEELIARIKYPGQLAMADCSTFEEGL----NAHK---LGFDIIGTTLSGYTGYTEKP 165 (229)
T ss_pred HHHHCCCcEEEeecccCCCCcchHHHHHHHhhcCCcEEEeccCCHHHHH----HHHH---cCCcEEecccccccCCCCCC
Confidence 99999999987531 1333444443311 12233322 2333 3554444456677 4332
Q ss_pred -HHHHHHHHHHHHcCCcEEeeecC
Q 017200 290 -DQVVSTMEKVRAAGVDVMTFGQY 312 (375)
Q Consensus 290 -ee~~etl~~Lrelgvd~v~i~qY 312 (375)
+.=.++++.|.+.++.+|-=|.|
T Consensus 166 ~~pDf~lvk~l~~~~~~vIAEGr~ 189 (229)
T COG3010 166 TEPDFQLVKQLSDAGCRVIAEGRY 189 (229)
T ss_pred CCCcHHHHHHHHhCCCeEEeeCCC
Confidence 22235566666666666655544
No 472
>KOG2670 consensus Enolase [Carbohydrate transport and metabolism]
Probab=57.36 E-value=2.3e+02 Score=28.89 Aligned_cols=146 Identities=23% Similarity=0.341 Sum_probs=84.2
Q ss_pred CCcCCCCCCCCC--CCCCCcchHHHHH-HHHHhcCCcEEEEEeee-------CC---CC--C----c----ccHHHHHHH
Q 017200 142 GCRFCNVKTSRA--PPPPDPDEPTNVA-EAIASWGLDYVVITSVD-------RD---DL--A----D----QGSGHFAQT 198 (375)
Q Consensus 142 ~C~FC~v~~~r~--~~~ld~eEi~~~a-~al~~~G~~eIvLTsgd-------r~---dl--~----d----~G~~~~~~l 198 (375)
+=.+|+|.-..+ |.-.+.+|-++.+ +++...|+..=+..|.| +| || . | .-.+.+.++
T Consensus 202 G~~a~nVGDEGGfAPnI~~~~E~L~Li~~Ai~kagyt~kikIgmDvAaseF~~dgkYDLdfk~~~~d~s~~~s~~~L~dl 281 (433)
T KOG2670|consen 202 GADATNVGDEGGFAPNIQTNEEALDLIKEAINKAGYTGKVKIGMDVAASEFYKDGKYDLDFKSPNSDPSRWLSGDQLADL 281 (433)
T ss_pred CccccccccccCcCCCccchHHHHHHHHHHHHhcCCCCceEEEEeechhhhhcCCcccccCcCCCCCcccccCHHHHHHH
Confidence 445677765433 3335667777655 56677899633334443 11 11 1 0 113568888
Q ss_pred HHHHHHhCCCcEEEeecCCCCCChHHHHHHHH-cCccccccccc-chH-HHHHHhcC-----------CCCCHHHHHHHH
Q 017200 199 VRKLKELKPNMLIEALVPDFRGNNGCVREVAK-SGLNVFAHNIE-TVE-ELQSAVRD-----------HRANFKQSLDVL 264 (375)
Q Consensus 199 ir~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~-aGldv~~hnlE-tv~-rl~~~mr~-----------r~~s~~~~l~vl 264 (375)
-+.+.+.+|.+.|| .|.-..+.+....+.. .++.++.--+- |.+ |+...+.. .=.+..++++..
T Consensus 282 Y~~~~k~yPivSiE--DPFdqdDw~~w~~~~~~~~iqiVgDDLtvTnpkri~~Ai~~k~cN~LLlKvNQIGtvtEsiea~ 359 (433)
T KOG2670|consen 282 YKSFIKDYPIVSIE--DPFDQDDWEAWSKFFKEVGIQIVGDDLTVTNPKRIATAIEEKACNALLLKVNQIGTVTESIEAA 359 (433)
T ss_pred HHHHHhcCCeeeec--CCcchhhHHHHHHHhhccceEEecCcccccCHHHHHHHHHHhhccceEeeccccccHHHHHHHH
Confidence 88888888864443 3421223455555433 34444433222 222 44333220 235788999999
Q ss_pred HHHHHhCCCCceEEEeEEEec--CCCHHHHHHHH
Q 017200 265 MMAKDYVPAGTLTKTSIMLGC--GETPDQVVSTM 296 (375)
Q Consensus 265 ~~ak~~~p~Gl~tkt~imvGl--GET~ee~~etl 296 (375)
+.+++ .|+ ++|+-+ |||++.|+..|
T Consensus 360 ~~a~~---~gw----gvmvSHRSGETeDtFIaDL 386 (433)
T KOG2670|consen 360 KLARS---AGW----GVMVSHRSGETEDTFIADL 386 (433)
T ss_pred HHHHh---cCc----eEEEeccCCCcccchHHHh
Confidence 99998 565 678888 99999998766
No 473
>TIGR00559 pdxJ pyridoxine 5'-phosphate synthase. PdxJ is required in the biosynthesis of pyridoxine (vitamin B6), a precursor to the enzyme cofactor pyridoxal phosphate. ECOCYC describes the predicted reaction equation as 1-amino-propan-2-one-3-phosphate + deoxyxylulose-5-phosphate = pyridoxine-5'-phosphate. The product of that reaction is oxidized by PdxH to pyridoxal 5'-phosphate.
Probab=57.35 E-value=41 Score=32.35 Aligned_cols=132 Identities=14% Similarity=0.250 Sum_probs=76.6
Q ss_pred cchHHHHHHHHHhcCCcEEEEEeeeCCCCC-ccc------HHHHHHHHHHHHHhCCCcEEEeecCCCCCChHHHHHHHHc
Q 017200 159 PDEPTNVAEAIASWGLDYVVITSVDRDDLA-DQG------SGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKS 231 (375)
Q Consensus 159 ~eEi~~~a~al~~~G~~eIvLTsgdr~dl~-d~G------~~~~~~lir~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~a 231 (375)
.+|+++.|..++ -+.|+|+=-.+..+. ++| .+.+.++++.+++. +++|.+++-. +.++++.-++.
T Consensus 72 ~~emi~ia~~vk---P~~vtLVPEkr~ElTTegGldv~~~~~~l~~~i~~l~~~--gI~VSLFiDP---~~~qi~~A~~~ 143 (237)
T TIGR00559 72 TEEMIRIAEEIK---PEQVTLVPEARDEVTTEGGLDVARLKDKLCELVKRFHAA--GIEVSLFIDA---DKDQISAAAEV 143 (237)
T ss_pred CHHHHHHHHHcC---CCEEEECCCCCCCccCCcCchhhhCHHHHHHHHHHHHHC--CCEEEEEeCC---CHHHHHHHHHh
Confidence 467777776553 467776644444442 344 35677788888764 7899887532 67899999999
Q ss_pred CcccccccccchHHHHHHhcCC---CCCHHHHHHHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcC-CcEE
Q 017200 232 GLNVFAHNIETVEELQSAVRDH---RANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAG-VDVM 307 (375)
Q Consensus 232 Gldv~~hnlEtv~rl~~~mr~r---~~s~~~~l~vl~~ak~~~p~Gl~tkt~imvGlGET~ee~~etl~~Lrelg-vd~v 307 (375)
|.|.+...-.. |..-... ...++...+..+.|++ .|+.+. .|+|=+-+.+.... +-.+ +.-+
T Consensus 144 GAd~VELhTG~----YA~a~~~~~~~~el~~i~~aa~~A~~---lGL~Vn----AGHgLny~Nv~~i~---~~~~~i~Ev 209 (237)
T TIGR00559 144 GADRIEIHTGP----YANAYNKKEMAEELQRIVKASVHAHS---LGLKVN----AGHGLNYHNVKYFA---EILPYLDEL 209 (237)
T ss_pred CcCEEEEechh----hhcCCCchhHHHHHHHHHHHHHHHHH---cCCEEe----cCCCCCHHhHHHHH---hCCCCceEE
Confidence 99987543211 1110000 1123344444455555 466554 47888877664322 3334 5677
Q ss_pred eeecC
Q 017200 308 TFGQY 312 (375)
Q Consensus 308 ~i~qY 312 (375)
+||..
T Consensus 210 nIGHs 214 (237)
T TIGR00559 210 NIGHA 214 (237)
T ss_pred ecCHH
Confidence 77633
No 474
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=57.35 E-value=61 Score=30.97 Aligned_cols=77 Identities=18% Similarity=0.229 Sum_probs=45.5
Q ss_pred CCcchHHHHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCCCcEEEe-ecCCCC-CChHHHHHHHHcCcc
Q 017200 157 PDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEA-LVPDFR-GNNGCVREVAKSGLN 234 (375)
Q Consensus 157 ld~eEi~~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p~i~Ie~-l~pd~~-g~~e~l~~L~~aGld 234 (375)
.+++++.+.++++.+.|++.|.|- |. ..-.-...+.++++.|++..+.+.++. ++-++. +....+. -.++|++
T Consensus 138 ~~~~~~~~~~~~~~~~G~d~i~l~--DT--~G~~~P~~v~~lv~~l~~~~~~~~l~~H~Hn~~GlA~AN~la-Ai~aGa~ 212 (263)
T cd07943 138 ASPEELAEQAKLMESYGADCVYVT--DS--AGAMLPDDVRERVRALREALDPTPVGFHGHNNLGLAVANSLA-AVEAGAT 212 (263)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEc--CC--CCCcCHHHHHHHHHHHHHhCCCceEEEEecCCcchHHHHHHH-HHHhCCC
Confidence 467889999999999999887653 21 110113568888899988776534443 222221 0122233 3367888
Q ss_pred cccc
Q 017200 235 VFAH 238 (375)
Q Consensus 235 v~~h 238 (375)
.+.-
T Consensus 213 ~vd~ 216 (263)
T cd07943 213 RIDG 216 (263)
T ss_pred EEEe
Confidence 6644
No 475
>PRK13384 delta-aminolevulinic acid dehydratase; Provisional
Probab=57.07 E-value=27 Score=34.87 Aligned_cols=54 Identities=24% Similarity=0.439 Sum_probs=42.3
Q ss_pred CCCcchHHHHHHHHHhcCCcEEEEEeeeCCCCCc-cc------HHHHHHHHHHHHHhCCCcEE
Q 017200 156 PPDPDEPTNVAEAIASWGLDYVVITSVDRDDLAD-QG------SGHFAQTVRKLKELKPNMLI 211 (375)
Q Consensus 156 ~ld~eEi~~~a~al~~~G~~eIvLTsgdr~dl~d-~G------~~~~~~lir~Ik~~~p~i~I 211 (375)
.++.+.+++.++.+.+.|++-|.|=|+.. ..| .| -.-+...|+.||+.+|++.|
T Consensus 57 r~sid~l~~~~~~~~~~Gi~~v~lFgv~~--~Kd~~gs~A~~~~g~v~~air~iK~~~pdl~v 117 (322)
T PRK13384 57 RLPESALADEIERLYALGIRYVMPFGISH--HKDAKGSDTWDDNGLLARMVRTIKAAVPEMMV 117 (322)
T ss_pred eECHHHHHHHHHHHHHcCCCEEEEeCCCC--CCCCCcccccCCCChHHHHHHHHHHHCCCeEE
Confidence 37899999999999999999999999831 122 11 12467899999999999766
No 476
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=56.91 E-value=1.8e+02 Score=27.67 Aligned_cols=81 Identities=16% Similarity=0.257 Sum_probs=54.8
Q ss_pred CCcchHHHHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCC-CcEEEeecCCCCCChHHHHHHHHcCccc
Q 017200 157 PDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKP-NMLIEALVPDFRGNNGCVREVAKSGLNV 235 (375)
Q Consensus 157 ld~eEi~~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p-~i~Ie~l~pd~~g~~e~l~~L~~aGldv 235 (375)
.|..-+.++++++.+.|++.+++=--|..-.|. ..--...+++|++..+ -+.+++.+-+ -...++.+.++|+|.
T Consensus 13 aD~~~l~~el~~~~~agad~iH~DVMDghFVPN--iTfGp~~v~~l~~~t~~p~DvHLMV~~---p~~~i~~fa~agad~ 87 (220)
T COG0036 13 ADFARLGEELKALEAAGADLIHIDVMDGHFVPN--ITFGPPVVKALRKITDLPLDVHLMVEN---PDRYIEAFAKAGADI 87 (220)
T ss_pred CCHhHHHHHHHHHHHcCCCEEEEeccCCCcCCC--cccCHHHHHHHhhcCCCceEEEEecCC---HHHHHHHHHHhCCCE
Confidence 566777888899999999999886655433333 1112456777776421 1455555432 246789999999999
Q ss_pred ccccccc
Q 017200 236 FAHNIET 242 (375)
Q Consensus 236 ~~hnlEt 242 (375)
+....|.
T Consensus 88 It~H~E~ 94 (220)
T COG0036 88 ITFHAEA 94 (220)
T ss_pred EEEEecc
Confidence 9988883
No 477
>COG4464 CapC Capsular polysaccharide biosynthesis protein [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=56.91 E-value=82 Score=30.17 Aligned_cols=75 Identities=15% Similarity=0.191 Sum_probs=44.7
Q ss_pred CCCCcchHHHHHHHHHhcCCcEEEEEeeeC-CCCCcccHHHHHHHHHHHHHhC--CCcEEEeecCC-CCCChHHHHHHHH
Q 017200 155 PPPDPDEPTNVAEAIASWGLDYVVITSVDR-DDLADQGSGHFAQTVRKLKELK--PNMLIEALVPD-FRGNNGCVREVAK 230 (375)
Q Consensus 155 ~~ld~eEi~~~a~al~~~G~~eIvLTsgdr-~dl~d~G~~~~~~lir~Ik~~~--p~i~Ie~l~pd-~~g~~e~l~~L~~ 230 (375)
.+-+.+|-+..++++.+.|++.||-|+-.. +-+. .-.+.+.+.+.+|.+.. ..+.++++.+. .+-+.+.++.+..
T Consensus 15 Gp~s~eesl~ml~~A~~qGvt~iVaTsHh~~g~y~-n~~~~v~~~~~~ln~~~~~~aidl~v~pGQEIrIt~~vl~~l~~ 93 (254)
T COG4464 15 GPKSLEESLAMLREAVRQGVTKIVATSHHLHGRYE-NPIEKVKEKANQLNEILKKEAIDLKVLPGQEIRITGDVLDDLDK 93 (254)
T ss_pred CCCcHHHHHHHHHHHHHcCceEEeecccccCCccC-ChHHHHHHHHHHHHHHHHhhcCCceeccCceEEEchHHHHHHhc
Confidence 356788999999999999999999999853 3332 22444555555544321 23444444431 1114455665554
No 478
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=56.58 E-value=2.3e+02 Score=29.47 Aligned_cols=167 Identities=17% Similarity=0.208 Sum_probs=90.0
Q ss_pred HHHHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHh------CCCcEEEeecCCCCCChHHHHHHHHcCccc
Q 017200 162 PTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKEL------KPNMLIEALVPDFRGNNGCVREVAKSGLNV 235 (375)
Q Consensus 162 i~~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~------~p~i~Ie~l~pd~~g~~e~l~~L~~aGldv 235 (375)
+.+..+.+.+.+...+.++-.+.. + .|.-...++++.+... ...+.|.+-++.-..+.+.+..|.++|+|+
T Consensus 163 l~eal~~m~~~~~~~lpVVDe~G~-l--vGiVT~~DIl~~~~~~~~~~d~~g~l~V~aav~~~~~~~~r~~~L~~aG~d~ 239 (450)
T TIGR01302 163 LEEALKVLHEHRIEKLPVVDKNGE-L--VGLITMKDIVKRRKFPHASKDENGRLIVGAAVGTREFDKERAEALVKAGVDV 239 (450)
T ss_pred HHHHHHHHHHcCCCeEEEEcCCCc-E--EEEEEhHHhhhcccCCcceEeCCCCEEEEEEecCchhHHHHHHHHHHhCCCE
Confidence 445556677778887776532111 1 1222234444443210 112344443332112467888999999998
Q ss_pred ccccccchHHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcCCcEEeeecCCCC
Q 017200 236 FAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQYMRP 315 (375)
Q Consensus 236 ~~hnlEtv~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~tkt~imvGlGET~ee~~etl~~Lrelgvd~v~i~qYl~P 315 (375)
+... +.. + +-...++.++.+++.+|. .-+|+|-+-|.++....+ ++|+|+|-++ +-|
T Consensus 240 I~vd--~a~---------g-~~~~~~~~i~~i~~~~~~-----~~vi~G~v~t~~~a~~l~----~aGad~i~vg--~g~ 296 (450)
T TIGR01302 240 IVID--SSH---------G-HSIYVIDSIKEIKKTYPD-----LDIIAGNVATAEQAKALI----DAGADGLRVG--IGP 296 (450)
T ss_pred EEEE--CCC---------C-cHhHHHHHHHHHHHhCCC-----CCEEEEeCCCHHHHHHHH----HhCCCEEEEC--CCC
Confidence 7642 211 1 235678889999886553 456778888988876554 5899998766 334
Q ss_pred CCCC-CC-cccc--CCHHHHHHHHHHHHHhhhhhhccchhhhhh
Q 017200 316 SKRH-MP-VSEY--ITPEAFERYRALGMEMGFRYVASGPMVRSS 355 (375)
Q Consensus 316 ~~~~-~~-v~~~--v~pe~~~~l~~~a~~~gf~~~~sgp~vrss 355 (375)
+.-. +. +... ..........+.+.+.+....+.| -+|++
T Consensus 297 G~~~~t~~~~~~g~p~~~~i~~~~~~~~~~~vpviadG-Gi~~~ 339 (450)
T TIGR01302 297 GSICTTRIVAGVGVPQITAVYDVAEYAAQSGIPVIADG-GIRYS 339 (450)
T ss_pred CcCCccceecCCCccHHHHHHHHHHHHhhcCCeEEEeC-CCCCH
Confidence 2111 11 1111 111233444445555566666666 44444
No 479
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.
Probab=56.44 E-value=31 Score=34.52 Aligned_cols=76 Identities=9% Similarity=0.097 Sum_probs=51.8
Q ss_pred CCcchHHHHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCCCcEEEeecCCCCCChHHHHHHHHcC-ccc
Q 017200 157 PDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSG-LNV 235 (375)
Q Consensus 157 ld~eEi~~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aG-ldv 235 (375)
.+.+|.+..++.+.+.|+++|.++++...... ..++.+.++.||+... +.|- ..+.+ +.+..+.+.+.| +|.
T Consensus 238 ~~~ee~~~~~~~l~~~g~d~i~vs~g~~~~~~---~~~~~~~~~~ik~~~~-ipvi-~~G~i--~~~~a~~~l~~g~~D~ 310 (338)
T cd02933 238 DPEATFSYLAKELNKRGLAYLHLVEPRVAGNP---EDQPPDFLDFLRKAFK-GPLI-AAGGY--DAESAEAALADGKADL 310 (338)
T ss_pred CCHHHHHHHHHHHHHcCCcEEEEecCCCCCcc---cccchHHHHHHHHHcC-CCEE-EECCC--CHHHHHHHHHcCCCCE
Confidence 56788899999999999999999887432212 1345677788887652 3332 34555 367777777765 887
Q ss_pred cccc
Q 017200 236 FAHN 239 (375)
Q Consensus 236 ~~hn 239 (375)
+..+
T Consensus 311 V~~g 314 (338)
T cd02933 311 VAFG 314 (338)
T ss_pred EEeC
Confidence 7665
No 480
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=56.34 E-value=47 Score=31.05 Aligned_cols=72 Identities=18% Similarity=0.256 Sum_probs=47.3
Q ss_pred hHHHHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCCCcEEEeecCCCCCChHHHHHHHHcCcccccc
Q 017200 161 EPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAH 238 (375)
Q Consensus 161 Ei~~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGldv~~h 238 (375)
++++.++.+.+.|+++|++|+.+++... .|. -.++++++.+..+ +.|-+. +... +.+.+..+.++|++.+..
T Consensus 150 ~~~~~~~~~~~~G~~~i~~~~~~~~g~~-~g~--~~~~i~~i~~~~~-iPvia~-GGI~-~~~di~~~~~~Ga~gv~v 221 (241)
T PRK13585 150 TPVEAAKRFEELGAGSILFTNVDVEGLL-EGV--NTEPVKELVDSVD-IPVIAS-GGVT-TLDDLRALKEAGAAGVVV 221 (241)
T ss_pred CHHHHHHHHHHcCCCEEEEEeecCCCCc-CCC--CHHHHHHHHHhCC-CCEEEe-CCCC-CHHHHHHHHHcCCCEEEE
Confidence 6778888889999999999998654221 222 1456777766542 333322 2222 577788899999887654
No 481
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=55.97 E-value=95 Score=30.18 Aligned_cols=128 Identities=15% Similarity=0.153 Sum_probs=0.0
Q ss_pred CcchHHHHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCCCcEEEeecCCCCCChHHHHHHHHcCccccc
Q 017200 158 DPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFA 237 (375)
Q Consensus 158 d~eEi~~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGldv~~ 237 (375)
+.+.+++.|+.+++.|.+.+..-+=+...-++.--..-.+-++.+++..-..-+.+++--+ +.+.++.+.+. +|++.
T Consensus 39 ~~~~~~~~A~~lk~~g~~~~r~~~~kpRTs~~s~~G~g~~gl~~l~~~~~~~Gl~~~te~~--d~~~~~~l~~~-vd~~k 115 (266)
T PRK13398 39 SEEQMVKVAEKLKELGVHMLRGGAFKPRTSPYSFQGLGEEGLKILKEVGDKYNLPVVTEVM--DTRDVEEVADY-ADMLQ 115 (266)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeeecCCCCCCccCCcHHHHHHHHHHHHHHcCCCEEEeeC--ChhhHHHHHHh-CCEEE
Q ss_pred ccccchHHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecCC-CHHHHHHHHHHHHHcCCcEEee
Q 017200 238 HNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGE-TPDQVVSTMEKVRAAGVDVMTF 309 (375)
Q Consensus 238 hnlEtv~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~tkt~imvGlGE-T~ee~~etl~~Lrelgvd~v~i 309 (375)
. ++.--+....++.+.+.... +.+++++ - |.+|+....+.+++.|..-+.+
T Consensus 116 I---------------ga~~~~n~~LL~~~a~~gkP-V~lk~G~-----~~s~~e~~~A~e~i~~~Gn~~i~L 167 (266)
T PRK13398 116 I---------------GSRNMQNFELLKEVGKTKKP-ILLKRGM-----SATLEEWLYAAEYIMSEGNENVVL 167 (266)
T ss_pred E---------------CcccccCHHHHHHHhcCCCc-EEEeCCC-----CCCHHHHHHHHHHHHhcCCCeEEE
No 482
>cd03315 MLE_like Muconate lactonizing enzyme (MLE) like subgroup of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and residues that can function as general acid/base catalysts, a Lys-X-Lys motif and another conserved lysine. Despite these conserved residues, the members of the MLE subgroup, like muconate lactonizing enzyme, o-succinylbenzoate synthase (OSBS) and N-acylamino acid racemase (NAAAR), catalyze different reactions.
Probab=55.87 E-value=1.5e+02 Score=28.03 Aligned_cols=146 Identities=14% Similarity=0.128 Sum_probs=82.0
Q ss_pred CcchHHHHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCC-CcEEEeecCCCCC--Ch----HHHHHHHH
Q 017200 158 DPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKP-NMLIEALVPDFRG--NN----GCVREVAK 230 (375)
Q Consensus 158 d~eEi~~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p-~i~Ie~l~pd~~g--~~----e~l~~L~~ 230 (375)
++++..+.++.+.+.|++.+-|=-+.. .+.-.+.|++|++..+ ++.+.+ |..+ +. +.++.|.+
T Consensus 85 ~~~~~~~~~~~~~~~G~~~~KiKvg~~-------~~~d~~~v~~vr~~~g~~~~l~v---Dan~~~~~~~a~~~~~~l~~ 154 (265)
T cd03315 85 EPAEVAEEARRALEAGFRTFKLKVGRD-------PARDVAVVAALREAVGDDAELRV---DANRGWTPKQAIRALRALED 154 (265)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEecCCC-------HHHHHHHHHHHHHhcCCCCEEEE---eCCCCcCHHHHHHHHHHHHh
Confidence 467888899999999999888753321 1233678888888764 554432 1111 22 23344444
Q ss_pred cCcccccccccchHHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcCCcEEeee
Q 017200 231 SGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFG 310 (375)
Q Consensus 231 aGldv~~hnlEtv~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~tkt~imvGlGET~ee~~etl~~Lrelgvd~v~i~ 310 (375)
.|++.+ |- -. +..+ ++.++.+++.. +++ | -.||+..+..+....++.-.+|++.+-
T Consensus 155 ~~i~~i----Ee-------P~-~~~d----~~~~~~l~~~~--~ip----i--a~dE~~~~~~~~~~~i~~~~~d~v~~k 210 (265)
T cd03315 155 LGLDYV----EQ-------PL-PADD----LEGRAALARAT--DTP----I--MADESAFTPHDAFRELALGAADAVNIK 210 (265)
T ss_pred cCCCEE----EC-------CC-Cccc----HHHHHHHHhhC--CCC----E--EECCCCCCHHHHHHHHHhCCCCEEEEe
Confidence 444433 21 01 1222 34444455421 122 2 235776666666666777778887662
Q ss_pred cCCCCCCCCCCccccCCHHHHHHHHHHHHHhhhhhhcc
Q 017200 311 QYMRPSKRHMPVSEYITPEAFERYRALGMEMGFRYVAS 348 (375)
Q Consensus 311 qYl~P~~~~~~v~~~v~pe~~~~l~~~a~~~gf~~~~s 348 (375)
|.+-+- ..+..++..+|.+.|...+.+
T Consensus 211 ----~~~~GG-------i~~~~~~~~~A~~~gi~~~~~ 237 (265)
T cd03315 211 ----TAKTGG-------LTKAQRVLAVAEALGLPVMVG 237 (265)
T ss_pred ----cccccC-------HHHHHHHHHHHHHcCCcEEec
Confidence 322121 345777888888888877654
No 483
>PRK06096 molybdenum transport protein ModD; Provisional
Probab=55.77 E-value=87 Score=30.87 Aligned_cols=90 Identities=11% Similarity=0.169 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHhCCCcEEEeecCCCCCChHHHHHHHHcCcccccccccchHHHHHHhcCCCCCHHHHHHHHHHHHHhCCC
Q 017200 194 HFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPA 273 (375)
Q Consensus 194 ~~~~lir~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGldv~~hnlEtv~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~ 273 (375)
.+.+.++.+|+..|...|++=.. +.+.+.+..++|+|++-. .+-+.++--++++.+++..|.
T Consensus 175 ~i~~av~~~r~~~~~~kIeVEv~----tleqa~ea~~agaDiI~L--------------Dn~~~e~l~~av~~~~~~~~~ 236 (284)
T PRK06096 175 DWSGAINQLRRHAPEKKIVVEAD----TPKEAIAALRAQPDVLQL--------------DKFSPQQATEIAQIAPSLAPH 236 (284)
T ss_pred cHHHHHHHHHHhCCCCCEEEECC----CHHHHHHHHHcCCCEEEE--------------CCCCHHHHHHHHHHhhccCCC
Confidence 35678888888776544444332 678899999999998753 134455555555555433232
Q ss_pred CceEEEeEEEecCCCHHHHHHHHHHHHHcCCcEEeee
Q 017200 274 GTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFG 310 (375)
Q Consensus 274 Gl~tkt~imvGlGET~ee~~etl~~Lrelgvd~v~i~ 310 (375)
+.+..+- |=|. +.+....+.|+|++..+
T Consensus 237 -~~leaSG----GI~~----~ni~~yA~tGvD~Is~g 264 (284)
T PRK06096 237 -CTLSLAG----GINL----NTLKNYADCGIRLFITS 264 (284)
T ss_pred -eEEEEEC----CCCH----HHHHHHHhcCCCEEEEC
Confidence 2221111 3354 45566678899999886
No 484
>PF01244 Peptidase_M19: Membrane dipeptidase (Peptidase family M19); InterPro: IPR008257 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of peptidases belong to the MEROPS peptidase family M19 (membrane dipeptidase family, clan MJ). The protein fold of the peptidase domain for members of this family resembles that of Klebsiella urease, the type example for clan MJ. Renal dipeptidase (rDP) (3.4.13.19 from EC), also known as microsomal dipeptidase, is a zinc-dependent metalloenzyme that hydrolyzes a wide range of dipeptides. It is involved in renal metabolism of glutathione and its conjugates. It is a homodimeric disulphide-linked glycoprotein attached to the renal brush border microvilli membrane by a GPI-anchor. A glutamate residue has recently been shown [,] to be important for the catalytic activity of rDP. rDP seems to be evolutionary related to hypothetical proteins in the PQQ biosynthesis operons of Acinetobacter calcoaceticus and Klebsiella pneumoniae.; GO: 0008235 metalloexopeptidase activity, 0008239 dipeptidyl-peptidase activity, 0016805 dipeptidase activity, 0006508 proteolysis; PDB: 3NEH_B 2RAG_D 3LU2_A 3B40_A 3LY0_A 3FDG_B 2I5G_B 3S2J_A 3S2N_A 3S2L_A ....
Probab=55.60 E-value=1.1e+02 Score=30.36 Aligned_cols=162 Identities=15% Similarity=0.232 Sum_probs=83.2
Q ss_pred HHHHHHHhcCCcEEEEEeee-------CCCC--CcccHHHH-HHHHHHHHHhCCCcEEEeecCCCCCChHH-HHHHHHc-
Q 017200 164 NVAEAIASWGLDYVVITSVD-------RDDL--ADQGSGHF-AQTVRKLKELKPNMLIEALVPDFRGNNGC-VREVAKS- 231 (375)
Q Consensus 164 ~~a~al~~~G~~eIvLTsgd-------r~dl--~d~G~~~~-~~lir~Ik~~~p~i~Ie~l~pd~~g~~e~-l~~L~~a- 231 (375)
+.++.+.++|++++-||=-. -..- .++|...| .++|+++-+. ++.|.+... +++. .+.+.-+
T Consensus 121 ~~l~~~y~lGvR~~~Lt~n~~N~~a~g~~~~~~~~~GLT~~G~~vV~~mn~l--Gm~vDvSH~----s~~t~~Dv~~~s~ 194 (320)
T PF01244_consen 121 ERLDEFYDLGVRYIGLTWNYRNELADGCGEPGNRDGGLTPFGREVVREMNRL--GMLVDVSHL----SEKTFWDVLEISK 194 (320)
T ss_dssp HHHHHHHHTTEEEEES-SSSBBSSBBBTTSTTTTSSSB-HHHHHHHHHHHHH--T-EEE-TTB-----HHHHHHHHHH-S
T ss_pred HHHHHHHHcCCEEEEEeecCCCccccccccccccCCCcChHHHHHHHHHHHc--CCeeeeccC----CHHHHHHHHhhcC
Confidence 66778889999999999321 1111 23454444 3567777655 577776653 2222 2233222
Q ss_pred CcccccccccchHHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEec-CC------CHHHHHHHHHHHHHc-C
Q 017200 232 GLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGC-GE------TPDQVVSTMEKVRAA-G 303 (375)
Q Consensus 232 Gldv~~hnlEtv~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~tkt~imvGl-GE------T~ee~~etl~~Lrel-g 303 (375)
.+=++.|. .+..+.+. +|..+ + +.|+.+.+. .| .+...++-.| ++ |.+++++|++.+.++ |
T Consensus 195 ~PviaSHS--n~ral~~h--~RNlt-D---e~iraia~~--GG-viGi~~~~~fl~~~~~~~~~~~~~~~Hi~y~~~l~G 263 (320)
T PF01244_consen 195 KPVIASHS--NARALCPH--PRNLT-D---EQIRAIAER--GG-VIGINFYPAFLGDDWDPRASLDDLVDHIDYIVDLVG 263 (320)
T ss_dssp SEEEECCE--EBTTTS----TTSB--H---HHHHHHHHT--T--EEEEESSHHHHSTTHSSG-BHHHHHHHHHHHHHHH-
T ss_pred CCEEEecc--ChHhhCCC--CCCCC-H---HHHHHHHHC--Cc-EEEEEcchhhhcccccccccHHHHHHHHHHHHHhcC
Confidence 23355663 22344433 23332 2 445555553 34 3566666555 55 799999999998876 7
Q ss_pred CcEEeeecCCCCCCCCCCccccCCHHHHHHHHHHHHHhhhh
Q 017200 304 VDVMTFGQYMRPSKRHMPVSEYITPEAFERYRALGMEMGFR 344 (375)
Q Consensus 304 vd~v~i~qYl~P~~~~~~v~~~v~pe~~~~l~~~a~~~gf~ 344 (375)
+|.|.||.=+- .-..++...-.+..+..+.+.-.++||.
T Consensus 264 ~dhVgiGsDfd--g~~~~~~gl~~~~~~~~l~~~L~~rG~s 302 (320)
T PF01244_consen 264 IDHVGIGSDFD--GIDGPPEGLEDPSDLPNLTEELLKRGYS 302 (320)
T ss_dssp GGGEEEE--BT--TTSSHBBTBSSGGGHHHHHHHHHHTTS-
T ss_pred CCeEEECcccC--CCCCCCCccCCHHHHHHHHHHHHHCCCC
Confidence 89999984331 0011133333455666665555556663
No 485
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=55.59 E-value=94 Score=29.10 Aligned_cols=74 Identities=18% Similarity=0.197 Sum_probs=47.3
Q ss_pred CcchHHHHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCCCcEEEeecCCCCCChHHHHHHHHc-Ccccc
Q 017200 158 DPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKS-GLNVF 236 (375)
Q Consensus 158 d~eEi~~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~a-Gldv~ 236 (375)
+..+..+.++.+.+.|+++|++|+.++..- ..| +..++++.+++.. ++.+-+ .++.. +.+.+..+.+. |+|.+
T Consensus 147 ~~~~~~~~~~~l~~~G~d~i~v~~i~~~g~-~~g--~~~~~i~~i~~~~-~~pvia-~GGi~-~~~di~~~l~~~g~dgv 220 (243)
T cd04731 147 TGLDAVEWAKEVEELGAGEILLTSMDRDGT-KKG--YDLELIRAVSSAV-NIPVIA-SGGAG-KPEHFVEAFEEGGADAA 220 (243)
T ss_pred cCCCHHHHHHHHHHCCCCEEEEeccCCCCC-CCC--CCHHHHHHHHhhC-CCCEEE-eCCCC-CHHHHHHHHHhCCCCEE
Confidence 456777888889999999999998765321 112 2467777777653 233332 23332 66777777775 88755
Q ss_pred c
Q 017200 237 A 237 (375)
Q Consensus 237 ~ 237 (375)
-
T Consensus 221 ~ 221 (243)
T cd04731 221 L 221 (243)
T ss_pred E
Confidence 3
No 486
>PRK13396 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=55.56 E-value=1.1e+02 Score=31.15 Aligned_cols=118 Identities=14% Similarity=0.179 Sum_probs=66.2
Q ss_pred CcchHHHHHHHHHhcCCcEEEEEeee---CCC---CCcccHHHHHHHHHHHHHhCCCcEEEeecCCCCCChHHHHHHHHc
Q 017200 158 DPDEPTNVAEAIASWGLDYVVITSVD---RDD---LADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKS 231 (375)
Q Consensus 158 d~eEi~~~a~al~~~G~~eIvLTsgd---r~d---l~d~G~~~~~~lir~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~a 231 (375)
+.+.+++.|+.+++.|++.+. ++- |.. +...| +.=.++++++++... +.+ ++--+ +.+.++.+.+.
T Consensus 113 s~eq~l~~A~~lk~~g~~~~r--~g~~kpRtsp~sf~G~g-~~gl~~L~~~~~e~G-l~~--~tev~--d~~~v~~~~~~ 184 (352)
T PRK13396 113 NEEMIVETAKRVKAAGAKFLR--GGAYKPRTSPYAFQGHG-ESALELLAAAREATG-LGI--ITEVM--DAADLEKIAEV 184 (352)
T ss_pred CHHHHHHHHHHHHHcCCCEEE--eeeecCCCCCcccCCch-HHHHHHHHHHHHHcC-CcE--EEeeC--CHHHHHHHHhh
Confidence 468899999999999998866 331 211 11123 334566666766552 322 22223 67788888877
Q ss_pred Cccccccccc-chHHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcCCc
Q 017200 232 GLNVFAHNIE-TVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVD 305 (375)
Q Consensus 232 Gldv~~hnlE-tv~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~tkt~imvGlGET~ee~~etl~~Lrelgvd 305 (375)
+|++..+-- ..+ ..+|+.+.+.... +.+++++ .-|.+|+...++.+.+.|..
T Consensus 185 -~d~lqIga~~~~n----------------~~LL~~va~t~kP-Vllk~G~----~~t~ee~~~A~e~i~~~Gn~ 237 (352)
T PRK13396 185 -ADVIQVGARNMQN----------------FSLLKKVGAQDKP-VLLKRGM----AATIDEWLMAAEYILAAGNP 237 (352)
T ss_pred -CCeEEECcccccC----------------HHHHHHHHccCCe-EEEeCCC----CCCHHHHHHHHHHHHHcCCC
Confidence 788876421 111 2334444432212 3445544 23667777777766666553
No 487
>PLN02617 imidazole glycerol phosphate synthase hisHF
Probab=55.34 E-value=46 Score=35.71 Aligned_cols=68 Identities=15% Similarity=0.237 Sum_probs=44.8
Q ss_pred hHHHHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCCCcEEEeecCCCCCChHHHHHHHH-cCcc
Q 017200 161 EPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAK-SGLN 234 (375)
Q Consensus 161 Ei~~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~-aGld 234 (375)
++++.++++.++|+.+|++|++++|--. .|.+ .++++.|++.. .+.|-++-+- ++.+.+..+.. .|++
T Consensus 439 ~~~~~~~~~~~~Gageil~t~id~DGt~-~G~d--~~l~~~v~~~~-~ipviasGG~--g~~~d~~~~~~~~~~~ 507 (538)
T PLN02617 439 GAYELAKAVEELGAGEILLNCIDCDGQG-KGFD--IELVKLVSDAV-TIPVIASSGA--GTPEHFSDVFSKTNAS 507 (538)
T ss_pred CHHHHHHHHHhcCCCEEEEeeccccccc-cCcC--HHHHHHHHhhC-CCCEEEECCC--CCHHHHHHHHhcCCcc
Confidence 5677788888999999999999987443 2332 67778777653 4555444432 26666665554 5554
No 488
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=55.32 E-value=44 Score=33.22 Aligned_cols=81 Identities=16% Similarity=0.228 Sum_probs=51.5
Q ss_pred CCCcchHHHHHHHHHhcCCcEEEEEeeeCCCC--CcccHHHHHHHHHHHHHhCCCcEEEeecCCCCCChHHHHHHHHcC-
Q 017200 156 PPDPDEPTNVAEAIASWGLDYVVITSVDRDDL--ADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSG- 232 (375)
Q Consensus 156 ~ld~eEi~~~a~al~~~G~~eIvLTsgdr~dl--~d~G~~~~~~lir~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aG- 232 (375)
..+++|.++.++.+.+.|+++|.+++|....- ...+..++.+.++.|++.. ++.|-+ .+.+. +.+..+.+.+.|
T Consensus 237 g~~~~e~~~ia~~Le~~gvd~iev~~g~~~~~~~~~~~~~~~~~~~~~ir~~~-~iPVi~-~G~i~-t~~~a~~~l~~g~ 313 (336)
T cd02932 237 GWDLEDSVELAKALKELGVDLIDVSSGGNSPAQKIPVGPGYQVPFAERIRQEA-GIPVIA-VGLIT-DPEQAEAILESGR 313 (336)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEECCCCCCcccccCCCccccHHHHHHHHhhC-CCCEEE-eCCCC-CHHHHHHHHHcCC
Confidence 35688889999999999999999887643211 1111234567777887765 233322 22332 677788888777
Q ss_pred ccccccc
Q 017200 233 LNVFAHN 239 (375)
Q Consensus 233 ldv~~hn 239 (375)
+|.+..+
T Consensus 314 aD~V~~g 320 (336)
T cd02932 314 ADLVALG 320 (336)
T ss_pred CCeehhh
Confidence 7776553
No 489
>cd01301 rDP_like renal dipeptidase (rDP), best studied in mammals and also called membrane or microsomal dipeptidase, is a membrane-bound glycoprotein hydrolyzing dipeptides and is involved in hydrolytic metabolism of penem and carbapenem beta-lactam antibiotics. Although the biological function of the enzyme is still unknown, it has been suggested to play a role in the renal glutathione metabolism.
Probab=55.07 E-value=2.2e+02 Score=28.15 Aligned_cols=163 Identities=15% Similarity=0.171 Sum_probs=86.7
Q ss_pred HHHHHHHHhcCCcEEEEEeeeCCCC-------CcccHHHH-HHHHHHHHHhCCCcEEEeecCCCCCChHHHHHHHHc-Cc
Q 017200 163 TNVAEAIASWGLDYVVITSVDRDDL-------ADQGSGHF-AQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKS-GL 233 (375)
Q Consensus 163 ~~~a~al~~~G~~eIvLTsgdr~dl-------~d~G~~~~-~~lir~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~a-Gl 233 (375)
+...+.+.++|++++-||=-....+ .+.|...+ .++|+++.+. ++.|.+..-. +....+.+.-+ .+
T Consensus 116 ~~~l~~~~~lGvR~i~Lt~n~~N~~a~g~~~~~~~GLt~~G~~vv~~mn~l--GmiiDvSH~s---~~~~~dv~~~s~~P 190 (309)
T cd01301 116 LALLRLLYRLGVRYLGLTWNGDNKFADGCGEKRGGGLTPFGKELVREMNRL--GIIIDLSHLS---ERTFWDVLDISNAP 190 (309)
T ss_pred HHHHHHHHHcCCeEEEeeecCCCccccCCCCCCCCCCCHHHHHHHHHHHHc--CCEEEcCCCC---HHHHHHHHHhcCCC
Confidence 4567788899999999993211111 12344333 3566666553 6777765432 22233333332 34
Q ss_pred ccccccccchHHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEec-----CCCHHHHHHHHHHHHHc-CCcEE
Q 017200 234 NVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGC-----GETPDQVVSTMEKVRAA-GVDVM 307 (375)
Q Consensus 234 dv~~hnlEtv~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~tkt~imvGl-----GET~ee~~etl~~Lrel-gvd~v 307 (375)
=++.|. .+..+.+. +|..+- +.++.+.+. .|+ +..++.-++ .-|.++++++++.+.++ |++.|
T Consensus 191 viaSHs--n~ral~~h--~RNltD----~~i~~ia~~--GGv-igi~~~~~fl~~~~~~~~~~~~~hi~~i~~l~G~dhV 259 (309)
T cd01301 191 VIASHS--NARALCDH--PRNLTD----AQLKAIAET--GGV-IGVNFYPAFLSPGADATLDDVVRHIDYIVDLIGIDHV 259 (309)
T ss_pred EEEecc--ChHHhcCC--CCCCCH----HHHHHHHHc--CCE-EEEeeeHHHhCCCCCCCHHHHHHHHHHHHHhcCCCeE
Confidence 455663 12233322 233433 334444442 343 444433333 46899999999998885 89999
Q ss_pred eeecCCCCCCCCCCccccCCHHHHHHHHHHHHHhhh
Q 017200 308 TFGQYMRPSKRHMPVSEYITPEAFERYRALGMEMGF 343 (375)
Q Consensus 308 ~i~qYl~P~~~~~~v~~~v~pe~~~~l~~~a~~~gf 343 (375)
.||.=+-=. ..+....-.++.+..+.+.-.+.||
T Consensus 260 giGsDfdg~--~~~~~gl~~~~~~~~l~~~L~~rG~ 293 (309)
T cd01301 260 GLGSDFDGI--GGTPGGLEDVSDLPNLTAELLERGY 293 (309)
T ss_pred EECcccCCC--CCCccccCCHHHHHHHHHHHHHcCC
Confidence 997422000 0111122345667666666666676
No 490
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=54.88 E-value=46 Score=30.25 Aligned_cols=76 Identities=12% Similarity=0.177 Sum_probs=48.1
Q ss_pred CCcchHHHHHHHHHhcCCcEEEEEeeeC-CCCCcccHHHHHHHHHHHHHhCCCcEEEeecCCCCCChHHHHHHHHcCccc
Q 017200 157 PDPDEPTNVAEAIASWGLDYVVITSVDR-DDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNV 235 (375)
Q Consensus 157 ld~eEi~~~a~al~~~G~~eIvLTsgdr-~dl~d~G~~~~~~lir~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGldv 235 (375)
.++.++.+.++.+.+.|+++|-+.-+-. ..... ...+.++.+++..+...|.+ .+.. +.+.+..+.++|+|.
T Consensus 110 ~~~~t~~~~~~~~~~~g~d~v~~~pg~~~~~~~~----~~~~~i~~l~~~~~~~~i~v-~GGI--~~~n~~~~~~~Ga~~ 182 (206)
T TIGR03128 110 INVKDKVKRAKELKELGADYIGVHTGLDEQAKGQ----NPFEDLQTILKLVKEARVAV-AGGI--NLDTIPDVIKLGPDI 182 (206)
T ss_pred cCCCChHHHHHHHHHcCCCEEEEcCCcCcccCCC----CCHHHHHHHHHhcCCCcEEE-ECCc--CHHHHHHHHHcCCCE
Confidence 3667787888888888999886643211 11111 12455677776666554432 3444 678899999999997
Q ss_pred cccc
Q 017200 236 FAHN 239 (375)
Q Consensus 236 ~~hn 239 (375)
+..+
T Consensus 183 v~vG 186 (206)
T TIGR03128 183 VIVG 186 (206)
T ss_pred EEEe
Confidence 7653
No 491
>PRK00311 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed
Probab=54.86 E-value=1.5e+02 Score=28.80 Aligned_cols=10 Identities=20% Similarity=0.375 Sum_probs=4.5
Q ss_pred HHHhcCCcEE
Q 017200 168 AIASWGLDYV 177 (375)
Q Consensus 168 al~~~G~~eI 177 (375)
.+.+.|++-|
T Consensus 30 l~e~aG~d~i 39 (264)
T PRK00311 30 LFDEAGVDVI 39 (264)
T ss_pred HHHHcCCCEE
Confidence 3344455444
No 492
>cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors.
Probab=54.84 E-value=72 Score=31.68 Aligned_cols=80 Identities=18% Similarity=0.202 Sum_probs=50.3
Q ss_pred CcchHHHHHHHHHhcCCcEEEEEeeeCC--C-----CC--ccc---H-H--HHHHHHHHHHHhCC-CcEEEeecCCCCCC
Q 017200 158 DPDEPTNVAEAIASWGLDYVVITSVDRD--D-----LA--DQG---S-G--HFAQTVRKLKELKP-NMLIEALVPDFRGN 221 (375)
Q Consensus 158 d~eEi~~~a~al~~~G~~eIvLTsgdr~--d-----l~--d~G---~-~--~~~~lir~Ik~~~p-~i~Ie~l~pd~~g~ 221 (375)
+.+++.+.++++.+.|++.|++++.... + .. .+| . . .-.+.++.+++..+ ++.|-..-+-. +
T Consensus 214 ~~~~~~~ia~~l~~aGad~I~~~n~~~~~~~~~~~~~~~~~gG~sG~~~~~~~l~~v~~l~~~~~~~ipIi~~GGI~--t 291 (327)
T cd04738 214 SDEELEDIADVALEHGVDGIIATNTTISRPGLLRSPLANETGGLSGAPLKERSTEVLRELYKLTGGKIPIIGVGGIS--S 291 (327)
T ss_pred CHHHHHHHHHHHHHcCCcEEEEECCcccccccccccccCCCCccCChhhhHHHHHHHHHHHHHhCCCCcEEEECCCC--C
Confidence 3458899999999999999999885321 1 10 011 1 1 22577778877653 45554433322 5
Q ss_pred hHHHHHHHHcCccccccc
Q 017200 222 NGCVREVAKSGLNVFAHN 239 (375)
Q Consensus 222 ~e~l~~L~~aGldv~~hn 239 (375)
.+.+.++..+|+|.+..+
T Consensus 292 ~~da~e~l~aGAd~V~vg 309 (327)
T cd04738 292 GEDAYEKIRAGASLVQLY 309 (327)
T ss_pred HHHHHHHHHcCCCHHhcc
Confidence 666666667999987654
No 493
>PRK04128 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=54.59 E-value=1.5e+02 Score=28.00 Aligned_cols=71 Identities=13% Similarity=0.261 Sum_probs=45.3
Q ss_pred hHHHHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCCCcEEEeecCCCCCChHHHHHHHHcCcccccc
Q 017200 161 EPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAH 238 (375)
Q Consensus 161 Ei~~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGldv~~h 238 (375)
+|++.|+.+.+. ++++++ +|.+.-.. |...-.++++.|.+. +.+.|.+- +.. .+.+.++.+.++|++.+-.
T Consensus 31 dp~~~a~~~~~~-~~~l~i--vDldga~~-g~~~n~~~i~~i~~~-~~~pv~~g-GGI-rs~edv~~l~~~G~~~viv 101 (228)
T PRK04128 31 DPVEIALRFSEY-VDKIHV--VDLDGAFE-GKPKNLDVVKNIIRE-TGLKVQVG-GGL-RTYESIKDAYEIGVENVII 101 (228)
T ss_pred CHHHHHHHHHHh-CCEEEE--EECcchhc-CCcchHHHHHHHHhh-CCCCEEEc-CCC-CCHHHHHHHHHCCCCEEEE
Confidence 688888888887 999999 55542211 222236677777664 33444322 222 2788999999999886543
No 494
>PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=54.56 E-value=70 Score=31.61 Aligned_cols=64 Identities=14% Similarity=0.260 Sum_probs=46.3
Q ss_pred HHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCCCcEEEeecCCCCCChHHHHHHHHcCccccccc
Q 017200 165 VAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHN 239 (375)
Q Consensus 165 ~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGldv~~hn 239 (375)
.+.++.+.|++-|.|= ... .+.+.+.++.+++..|++.+++.- .. +.+.+..+.+.|+|++..+
T Consensus 211 ea~eal~~gaDiI~LD-----nm~---~e~vk~av~~~~~~~~~v~ieaSG-GI--~~~ni~~yA~tGvD~Is~g 274 (289)
T PRK07896 211 QLDEVLAEGAELVLLD-----NFP---VWQTQEAVQRRDARAPTVLLESSG-GL--TLDTAAAYAETGVDYLAVG 274 (289)
T ss_pred HHHHHHHcCCCEEEeC-----CCC---HHHHHHHHHHHhccCCCEEEEEEC-CC--CHHHHHHHHhcCCCEEEeC
Confidence 5555667888877653 222 456777777777777888888653 33 7899999999999988654
No 495
>TIGR00167 cbbA ketose-bisphosphate aldolases. fructose-bisphosphate and tagatose-bisphosphate aldolase.
Probab=54.55 E-value=2.2e+02 Score=28.00 Aligned_cols=169 Identities=19% Similarity=0.215 Sum_probs=99.0
Q ss_pred CCcchHHHHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhC-CCcEEEeecCCCCCChHHHHHHHHcCccc
Q 017200 157 PDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELK-PNMLIEALVPDFRGNNGCVREVAKSGLNV 235 (375)
Q Consensus 157 ld~eEi~~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~-p~i~Ie~l~pd~~g~~e~l~~L~~aGldv 235 (375)
.+.+.+...++++.+.+.--|+-++...-.+. .|.+.+..+++...+.. +.+.|. +.-|...+.+.+..-.++|..+
T Consensus 26 ~n~e~~~avi~AAee~~sPvIlq~~~~~~~~~-~g~~~~~~~~~~~a~~~~~~VPV~-lHLDHg~~~e~i~~ai~~GftS 103 (288)
T TIGR00167 26 NNLETINAVLEAAAEEKSPVIIQFSNGAAKYI-AGLGAISAMVKAMSEAYPYGVPVA-LHLDHGASEEDCAQAVKAGFSS 103 (288)
T ss_pred CCHHHHHHHHHHHHHHCCCEEEECCcchhhcc-CCHHHHHHHHHHHHHhccCCCcEE-EECCCCCCHHHHHHHHHcCCCE
Confidence 34677778888888888876666555433321 24677888888776654 134433 5567666788888888988664
Q ss_pred ccccccchH-HHHHHhcCCCCCHHHHHHHHHHHHHhCCCCceEE--EeEEEecCCC----HH------HHHHHHHHHHHc
Q 017200 236 FAHNIETVE-ELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTK--TSIMLGCGET----PD------QVVSTMEKVRAA 302 (375)
Q Consensus 236 ~~hnlEtv~-rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~tk--t~imvGlGET----~e------e~~etl~~Lrel 302 (375)
+ .++.+. .+ .-+.+...++++.||. .|+.+- -|.|-|- |+ .+ +-.+..+++++.
T Consensus 104 V--MiDgS~lp~-------eeNi~~T~~vv~~Ah~---~gv~VEaElG~vgg~-e~~~~~~~~~~~~T~peea~~Fv~~T 170 (288)
T TIGR00167 104 V--MIDGSHEPF-------EENIELTKKVVERAHK---MGVSVEAELGTLGGE-EDGVSVADESALYTDPEEAKEFVKLT 170 (288)
T ss_pred E--EecCCCCCH-------HHHHHHHHHHHHHHHH---cCCEEEEEEeeccCc-cCCcccccccccCCCHHHHHHHHhcc
Confidence 3 345443 11 1234455677888887 355443 3333222 11 11 335788899999
Q ss_pred CCcEEeeecCCCCCCCCCCccccCCHH--HHHHHHHHHHHhhhhhh
Q 017200 303 GVDVMTFGQYMRPSKRHMPVSEYITPE--AFERYRALGMEMGFRYV 346 (375)
Q Consensus 303 gvd~v~i~qYl~P~~~~~~v~~~v~pe--~~~~l~~~a~~~gf~~~ 346 (375)
|+|.+-+. + ++-|-.-.. .|. .|++|+++....+.-.|
T Consensus 171 gvD~LAva-i---Gt~HG~y~~--~p~~Ld~~~L~~I~~~v~vPLV 210 (288)
T TIGR00167 171 GVDSLAAA-I---GNVHGVYKG--EPKGLDFERLEEIQKYVNLPLV 210 (288)
T ss_pred CCcEEeec-c---CccccccCC--CCCccCHHHHHHHHHHhCCCEE
Confidence 99987663 1 122211110 132 57778777777665333
No 496
>COG0113 HemB Delta-aminolevulinic acid dehydratase [Coenzyme metabolism]
Probab=54.45 E-value=39 Score=33.69 Aligned_cols=56 Identities=29% Similarity=0.444 Sum_probs=43.4
Q ss_pred CCCcchHHHHHHHHHhcCCcEEEEEeeeCCCCCcc-cH------HHHHHHHHHHHHhCCCcEE
Q 017200 156 PPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQ-GS------GHFAQTVRKLKELKPNMLI 211 (375)
Q Consensus 156 ~ld~eEi~~~a~al~~~G~~eIvLTsgdr~dl~d~-G~------~~~~~lir~Ik~~~p~i~I 211 (375)
.++.+++++.++.+.++|++-|.|=|+-.+.+.|. |. .-+...++.||+.+|++.|
T Consensus 57 r~s~d~l~~~~~~~~~lGi~av~LFgvp~~~~Kd~~gs~A~~~~givqravr~ik~~~p~l~i 119 (330)
T COG0113 57 RYSLDRLVEEAEELVDLGIPAVILFGVPDDSKKDETGSEAYDPDGIVQRAVRAIKEAFPELVV 119 (330)
T ss_pred eccHHHHHHHHHHHHhcCCCEEEEeCCCcccccCcccccccCCCChHHHHHHHHHHhCCCeEE
Confidence 47899999999999999999999999864433331 11 1356789999999997655
No 497
>TIGR02151 IPP_isom_2 isopentenyl-diphosphate delta-isomerase, type 2. Isopentenyl-diphosphate delta-isomerase (IPP isomerase) interconverts isopentenyl diphosphate and dimethylallyl diphosphate. This model represents the type 2 enzyme. FMN, NADPH, and Mg2+ are required by this form, which lacks homology to the type 1 enzyme (TIGR02150). IPP is precursor to many compounds, including enzyme cofactors, sterols, and isoprenoids.
Probab=54.27 E-value=1.8e+02 Score=28.99 Aligned_cols=134 Identities=22% Similarity=0.266 Sum_probs=69.2
Q ss_pred HHHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCCCcEEEe--ecCCCCC-ChH-HHHHHHHcCcccccc
Q 017200 163 TNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEA--LVPDFRG-NNG-CVREVAKSGLNVFAH 238 (375)
Q Consensus 163 ~~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p~i~Ie~--l~pd~~g-~~e-~l~~L~~aGldv~~h 238 (375)
.+.|+...+.|+--. +.++ +-.+.+ .+ +.+..+.+++..|++.+-+ ..+.... +.+ ..+.+...+.|.+..
T Consensus 73 ~~La~~a~~~g~~~~-~Gs~-~~~~~~--~~-~~~~~~~vr~~~~~~p~i~nl~~~~~~~~~~~~~~~~i~~i~adal~i 147 (333)
T TIGR02151 73 RNLARAARELGIPMG-VGSQ-RAALKD--PE-TADTFEVVREEAPNGPLIANIGAPQLVEGGPEEAQEAIDMIEADALAI 147 (333)
T ss_pred HHHHHHHHHcCCCeE-EcCc-hhhccC--hh-hHhHHHHHHHhCCCCcEEeecCchhhccccHHHHHHHHHHhcCCCEEE
Confidence 345666667776433 2222 112222 12 3444466776666654432 1112111 122 223333334555555
Q ss_pred cccchHHHHHHhcC-CCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcCCcEEeeec
Q 017200 239 NIETVEELQSAVRD-HRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQ 311 (375)
Q Consensus 239 nlEtv~rl~~~mr~-r~~s~~~~l~vl~~ak~~~p~Gl~tkt~imvGlGET~ee~~etl~~Lrelgvd~v~i~q 311 (375)
++....++ +.+ ...+++.+++.++.+++..+-=+.+| ++|+|-+ .+..+.|.+.|+|.|.++.
T Consensus 148 ~ln~~q~~---~~p~g~~~f~~~le~i~~i~~~~~vPVivK---~~g~g~~----~~~a~~L~~aGvd~I~Vsg 211 (333)
T TIGR02151 148 HLNVLQEL---VQPEGDRNFKGWLEKIAEICSQLSVPVIVK---EVGFGIS----KEVAKLLADAGVSAIDVAG 211 (333)
T ss_pred cCcccccc---cCCCCCcCHHHHHHHHHHHHHhcCCCEEEE---ecCCCCC----HHHHHHHHHcCCCEEEECC
Confidence 54322222 121 23368888999999998632113345 4577754 4667788999999998853
No 498
>cd02811 IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2 (IDI-2) FMN-binding domain. Two types of IDIs have been characterized at present. The long known IDI-1 is only dependent on divalent metals for activity, whereas IDI-2 requires a metal, FMN and NADPH. IDI-2 catalyzes the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) in the mevalonate pathway.
Probab=54.16 E-value=1.3e+02 Score=29.88 Aligned_cols=134 Identities=20% Similarity=0.276 Sum_probs=70.7
Q ss_pred HHHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCCCcEEEe--ecCCCCC-ChHHHH-HHHHcCcccccc
Q 017200 163 TNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEA--LVPDFRG-NNGCVR-EVAKSGLNVFAH 238 (375)
Q Consensus 163 ~~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p~i~Ie~--l~pd~~g-~~e~l~-~L~~aGldv~~h 238 (375)
.+.|+...+.|+--. +|-.+..+.+ .+ +.+.++.+++..|+..+-+ ..+...+ +.+.+. .+...+.|.+..
T Consensus 72 ~~La~~a~~~g~~~~--~Gs~~~~~~~--~e-~~~~~~~vr~~~~~~p~~~Nl~~~~~~~~~~~~~~~~i~~~~adalel 146 (326)
T cd02811 72 RNLAEAAEELGIAMG--VGSQRAALED--PE-LAESFTVVREAPPNGPLIANLGAVQLNGYGVEEARRAVEMIEADALAI 146 (326)
T ss_pred HHHHHHHHHcCCCeE--ecCchhhccC--hh-hhhHHHHHHHhCCCceEEeecCccccCCCCHHHHHHHHHhcCCCcEEE
Confidence 455666667775322 1111111212 22 3467788888777544322 2222111 334333 333456676666
Q ss_pred cccchHHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcCCcEEeee
Q 017200 239 NIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFG 310 (375)
Q Consensus 239 nlEtv~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~tkt~imvGlGET~ee~~etl~~Lrelgvd~v~i~ 310 (375)
++....++. +.....+++.|++.++.+++..+-=+.+| ++|+|-|. +..+.|.+.|+|.|.+.
T Consensus 147 ~l~~~q~~~--~~~~~~df~~~~~~i~~l~~~~~vPVivK---~~g~g~s~----~~a~~l~~~Gvd~I~vs 209 (326)
T cd02811 147 HLNPLQEAV--QPEGDRDFRGWLERIEELVKALSVPVIVK---EVGFGISR----ETAKRLADAGVKAIDVA 209 (326)
T ss_pred eCcchHhhc--CCCCCcCHHHHHHHHHHHHHhcCCCEEEE---ecCCCCCH----HHHHHHHHcCCCEEEEC
Confidence 553222211 11123368888999999998532113344 35777773 56677889999998874
No 499
>PLN02446 (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
Probab=54.05 E-value=68 Score=31.26 Aligned_cols=66 Identities=14% Similarity=0.037 Sum_probs=44.2
Q ss_pred hHHHHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCCCcEEEeecCCCCCChHHHHHHHHcC
Q 017200 161 EPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSG 232 (375)
Q Consensus 161 Ei~~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aG 232 (375)
++.+.+....+.|+.++++|.+++|-.- .|.+ .++++.|.+. +.+.|-+.-+ .++.+.+..|++.|
T Consensus 164 ~~~e~~~~~~~~g~~eii~TdI~rDGtl-~G~d--~el~~~l~~~-~~ipVIASGG--v~sleDi~~L~~~g 229 (262)
T PLN02446 164 AVDEETLEFLAAYCDEFLVHGVDVEGKR-LGID--EELVALLGEH-SPIPVTYAGG--VRSLDDLERVKVAG 229 (262)
T ss_pred CHHHHHHHHHHhCCCEEEEEEEcCCCcc-cCCC--HHHHHHHHhh-CCCCEEEECC--CCCHHHHHHHHHcC
Confidence 4555566777889999999999987542 2332 5677777765 3455543322 22778899998876
No 500
>cd00947 TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) aldolase and related Type B Class II aldolases. TBP aldolase is a tetrameric class II aldolase that catalyzes the reversible condensation of dihydroxyacetone phosphate with glyceraldehyde 3-phsophate to produce tagatose 1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=54.04 E-value=2.2e+02 Score=27.85 Aligned_cols=171 Identities=15% Similarity=0.158 Sum_probs=98.1
Q ss_pred CCcchHHHHHHHHHhcCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHHhCCCcEEEeecCCCCCChHHHHHHHHcCcccc
Q 017200 157 PDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVF 236 (375)
Q Consensus 157 ld~eEi~~~a~al~~~G~~eIvLTsgdr~dl~d~G~~~~~~lir~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGldv~ 236 (375)
.+.+.+...++++.+.+.--|+-++...-.+ .|.+.+..+++.+.+.. .+.|. +.-|+..+.+.+..-.++|.+++
T Consensus 21 ~n~e~~~avi~AAe~~~sPvIi~~~~~~~~~--~~~~~~~~~~~~~a~~~-~VPV~-lHLDH~~~~~~i~~ai~~GftSV 96 (276)
T cd00947 21 NNLETLKAILEAAEETRSPVILQISEGAIKY--AGLELLVAMVKAAAERA-SVPVA-LHLDHGSSFELIKRAIRAGFSSV 96 (276)
T ss_pred CCHHHHHHHHHHHHHhCCCEEEEcCcchhhh--CCHHHHHHHHHHHHHHC-CCCEE-EECCCCCCHHHHHHHHHhCCCEE
Confidence 4567777788888888877776666543332 34677888888887654 23333 44566557788888889996543
Q ss_pred cccccchHHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCceE--EEeEEEecCCC-------HHHHHHHHHHHHHcCCcEE
Q 017200 237 AHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLT--KTSIMLGCGET-------PDQVVSTMEKVRAAGVDVM 307 (375)
Q Consensus 237 ~hnlEtv~rl~~~mr~r~~s~~~~l~vl~~ak~~~p~Gl~t--kt~imvGlGET-------~ee~~etl~~Lrelgvd~v 307 (375)
.++.+..-+ .-+.+...++++.||.. |+.+ --|-|-|-.+. .-+..+..+++++.|+|.+
T Consensus 97 --MiD~S~l~~------eeNi~~t~~vv~~ah~~---gv~VEaElG~i~g~e~~~~~~~~~~T~pe~a~~Fv~~TgvD~L 165 (276)
T cd00947 97 --MIDGSHLPF------EENVAKTKEVVELAHAY---GVSVEAELGRIGGEEDGVVGDEGLLTDPEEAEEFVEETGVDAL 165 (276)
T ss_pred --EeCCCCCCH------HHHHHHHHHHHHHHHHc---CCeEEEEEeeecCccCCcccccccCCCHHHHHHHHHHHCCCEE
Confidence 445443111 12345556788888883 5544 33333222101 1135677888999999987
Q ss_pred eeecCCCCCCCCCCccccCCHHHHHHHHHHHHHhhhhhh
Q 017200 308 TFGQYMRPSKRHMPVSEYITPEAFERYRALGMEMGFRYV 346 (375)
Q Consensus 308 ~i~qYl~P~~~~~~v~~~v~pe~~~~l~~~a~~~gf~~~ 346 (375)
-+. + ++-|-.-..-...=.|++|+++....+...|
T Consensus 166 Avs-i---Gt~HG~Y~~~~p~L~~~~L~~i~~~~~vPLV 200 (276)
T cd00947 166 AVA-I---GTSHGAYKGGEPKLDFDRLKEIAERVNVPLV 200 (276)
T ss_pred Eec-c---CccccccCCCCCccCHHHHHHHHHHhCCCEE
Confidence 662 1 1222111000001136777777776665333
Done!