Query 017202
Match_columns 375
No_of_seqs 141 out of 1199
Neff 6.4
Searched_HMMs 46136
Date Fri Mar 29 06:30:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017202.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017202hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00332 Glyco_hydro_17: Glyco 100.0 6E-86 1.3E-90 645.0 20.7 309 29-347 1-310 (310)
2 COG5309 Exo-beta-1,3-glucanase 100.0 1.6E-48 3.5E-53 364.2 24.7 253 25-339 42-305 (305)
3 PF07745 Glyco_hydro_53: Glyco 99.0 1.3E-08 2.7E-13 101.0 18.6 249 43-345 26-329 (332)
4 COG3867 Arabinogalactan endo-1 98.7 3.7E-07 8E-12 88.1 14.8 251 43-347 65-390 (403)
5 PF03198 Glyco_hydro_72: Gluca 98.5 2.1E-06 4.5E-11 84.0 14.8 128 29-159 30-182 (314)
6 PRK10150 beta-D-glucuronidase; 98.3 0.00022 4.9E-09 76.2 23.7 254 29-344 295-584 (604)
7 PF00150 Cellulase: Cellulase 98.1 0.00083 1.8E-08 63.5 21.1 128 28-157 10-171 (281)
8 smart00633 Glyco_10 Glycosyl h 97.5 0.02 4.4E-07 54.6 19.8 78 250-345 173-251 (254)
9 PF02836 Glyco_hydro_2_C: Glyc 97.0 0.071 1.5E-06 51.8 18.2 95 28-122 17-132 (298)
10 PF11790 Glyco_hydro_cc: Glyco 96.7 0.033 7.1E-07 52.9 13.3 68 259-341 165-232 (239)
11 cd02875 GH18_chitobiase Chitob 90.5 4.8 0.0001 40.5 12.9 131 54-206 55-190 (358)
12 PRK10340 ebgA cryptic beta-D-g 90.2 13 0.00028 42.8 17.3 97 28-124 336-452 (1021)
13 PF00232 Glyco_hydro_1: Glycos 85.8 0.57 1.2E-05 48.6 2.8 281 44-343 61-441 (455)
14 PRK13511 6-phospho-beta-galact 77.1 4.8 0.0001 42.1 5.9 75 257-340 365-446 (469)
15 PRK09936 hypothetical protein; 76.7 11 0.00023 37.2 7.7 57 29-85 22-95 (296)
16 cd02874 GH18_CFLE_spore_hydrol 74.3 15 0.00033 35.8 8.3 82 65-150 48-138 (313)
17 PF02449 Glyco_hydro_42: Beta- 73.8 6.5 0.00014 39.5 5.7 81 44-124 13-140 (374)
18 KOG0626 Beta-glucosidase, lact 71.5 29 0.00063 36.8 9.9 82 256-345 404-499 (524)
19 COG4782 Uncharacterized protei 70.6 15 0.00032 37.4 7.2 60 237-299 125-187 (377)
20 cd00598 GH18_chitinase-like Th 70.2 13 0.00027 33.6 6.3 80 67-150 54-142 (210)
21 smart00481 POLIIIAc DNA polyme 69.9 16 0.00034 27.1 5.7 44 41-84 15-63 (67)
22 cd06545 GH18_3CO4_chitinase Th 67.7 55 0.0012 30.9 10.3 77 66-150 50-133 (253)
23 TIGR03356 BGL beta-galactosida 62.1 17 0.00037 37.5 6.1 75 257-340 335-414 (427)
24 PRK09525 lacZ beta-D-galactosi 57.8 95 0.0021 35.9 11.5 97 28-124 352-465 (1027)
25 PLN00196 alpha-amylase; Provis 56.3 45 0.00098 34.6 8.0 81 1-83 1-113 (428)
26 PF13721 SecD-TM1: SecD export 55.5 96 0.0021 25.5 8.3 46 15-60 20-65 (101)
27 PLN02998 beta-glucosidase 53.8 24 0.00052 37.3 5.6 75 257-340 390-466 (497)
28 PF05990 DUF900: Alpha/beta hy 52.7 53 0.0012 30.9 7.2 42 254-298 44-88 (233)
29 PLN02814 beta-glucosidase 52.5 39 0.00084 35.9 6.8 75 257-340 385-461 (504)
30 PF04909 Amidohydro_2: Amidohy 52.4 40 0.00087 31.1 6.4 52 136-202 85-137 (273)
31 PF00331 Glyco_hydro_10: Glyco 51.9 24 0.00052 34.9 4.9 221 66-344 63-312 (320)
32 PF00925 GTP_cyclohydro2: GTP 49.8 21 0.00046 32.1 3.8 37 47-83 132-168 (169)
33 PRK09589 celA 6-phospho-beta-g 48.2 40 0.00086 35.5 6.1 75 259-340 367-447 (476)
34 PLN02849 beta-glucosidase 48.1 36 0.00079 36.1 5.8 75 257-340 383-461 (503)
35 cd02876 GH18_SI-CLP Stabilin-1 45.4 1.1E+02 0.0024 29.8 8.5 61 131-206 129-190 (318)
36 TIGR03581 EF_0839 conserved hy 45.0 41 0.00089 31.9 5.0 60 18-77 108-179 (236)
37 COG4213 XylF ABC-type xylose t 45.0 40 0.00086 33.7 5.1 77 65-160 175-251 (341)
38 TIGR00505 ribA GTP cyclohydrol 43.2 38 0.00082 31.1 4.5 33 47-79 131-163 (191)
39 PRK00393 ribA GTP cyclohydrola 42.8 38 0.00081 31.3 4.4 33 47-79 134-166 (197)
40 cd04743 NPD_PKS 2-Nitropropane 42.2 1.9E+02 0.004 29.0 9.4 79 27-122 56-134 (320)
41 cd02873 GH18_IDGF The IDGF's ( 41.6 1.2E+02 0.0026 31.1 8.3 20 131-150 168-187 (413)
42 PF02449 Glyco_hydro_42: Beta- 39.2 1.9E+02 0.004 29.0 9.2 55 131-205 208-262 (374)
43 COG2159 Predicted metal-depend 39.1 2E+02 0.0044 28.1 9.1 94 137-274 114-209 (293)
44 cd02872 GH18_chitolectin_chito 39.0 75 0.0016 31.6 6.2 58 131-207 133-192 (362)
45 PF01229 Glyco_hydro_39: Glyco 36.9 5.1E+02 0.011 27.1 14.6 250 47-342 46-350 (486)
46 PF00834 Ribul_P_3_epim: Ribul 35.4 3.6E+02 0.0079 24.9 9.8 100 42-157 68-172 (201)
47 PF07071 DUF1341: Protein of u 34.6 41 0.00088 31.6 3.2 61 18-78 108-180 (218)
48 PLN03059 beta-galactosidase; P 34.6 7.4E+02 0.016 28.2 14.0 153 5-161 5-223 (840)
49 TIGR03632 bact_S11 30S ribosom 33.0 98 0.0021 25.8 5.0 36 44-79 50-90 (108)
50 PRK12485 bifunctional 3,4-dihy 32.5 52 0.0011 33.5 3.9 32 47-79 331-362 (369)
51 COG3934 Endo-beta-mannanase [C 32.4 77 0.0017 33.6 5.1 186 97-345 123-312 (587)
52 cd00641 GTP_cyclohydro2 GTP cy 32.4 68 0.0015 29.4 4.4 34 47-80 133-166 (193)
53 PRK09989 hypothetical protein; 31.8 4.3E+02 0.0093 24.7 14.1 164 29-209 4-184 (258)
54 PRK14019 bifunctional 3,4-dihy 31.5 56 0.0012 33.3 3.9 33 47-80 328-360 (367)
55 TIGR01233 lacG 6-phospho-beta- 31.4 94 0.002 32.6 5.7 75 257-340 364-444 (467)
56 cd01543 PBP1_XylR Ligand-bindi 29.0 3E+02 0.0065 25.2 8.3 127 44-191 98-238 (265)
57 smart00636 Glyco_18 Glycosyl h 28.7 1.2E+02 0.0027 29.5 5.8 79 68-148 57-142 (334)
58 PF14871 GHL6: Hypothetical gl 28.5 1.3E+02 0.0028 26.0 5.2 43 42-84 1-66 (132)
59 COG1433 Uncharacterized conser 28.4 1.2E+02 0.0026 26.0 4.9 39 45-83 56-94 (121)
60 TIGR02026 BchE magnesium-proto 28.2 7.1E+02 0.015 26.1 11.8 92 42-143 223-334 (497)
61 PF01055 Glyco_hydro_31: Glyco 27.9 2.7E+02 0.006 28.4 8.4 135 131-321 42-182 (441)
62 PF14488 DUF4434: Domain of un 27.8 53 0.0012 29.4 2.8 20 66-85 69-88 (166)
63 PRK09593 arb 6-phospho-beta-gl 27.6 1.6E+02 0.0035 31.0 6.7 74 260-340 369-448 (478)
64 PF02811 PHP: PHP domain; Int 27.5 1.2E+02 0.0025 26.0 4.9 45 40-84 15-64 (175)
65 PRK09852 cryptic 6-phospho-bet 27.5 1.5E+02 0.0033 31.2 6.5 74 259-340 365-444 (474)
66 PRK09318 bifunctional 3,4-dihy 27.4 85 0.0018 32.2 4.4 37 47-83 320-356 (387)
67 PRK15014 6-phospho-beta-glucos 27.0 1.2E+02 0.0027 31.8 5.7 75 259-340 368-448 (477)
68 KOG0078 GTP-binding protein SE 26.9 1.4E+02 0.0031 28.0 5.4 62 56-122 61-127 (207)
69 PRK09314 bifunctional 3,4-dihy 26.8 82 0.0018 31.8 4.1 34 46-79 300-334 (339)
70 TIGR01579 MiaB-like-C MiaB-lik 26.5 6.9E+02 0.015 25.3 12.1 59 131-208 272-330 (414)
71 PRK08815 GTP cyclohydrolase; P 26.2 92 0.002 31.9 4.4 37 47-83 305-341 (375)
72 PRK14334 (dimethylallyl)adenos 26.0 6.2E+02 0.014 26.1 10.6 57 131-206 271-327 (440)
73 PRK09311 bifunctional 3,4-dihy 26.0 92 0.002 32.1 4.4 37 47-83 339-375 (402)
74 PF00411 Ribosomal_S11: Riboso 25.9 1.3E+02 0.0029 25.0 4.7 36 45-80 51-91 (110)
75 PF00977 His_biosynth: Histidi 25.7 2.3E+02 0.0051 26.4 6.8 70 41-125 29-108 (229)
76 PRK08091 ribulose-phosphate 3- 25.6 4.2E+02 0.0091 25.1 8.5 101 42-156 79-184 (228)
77 PRK09319 bifunctional 3,4-dihy 25.4 95 0.0021 33.4 4.5 37 47-83 343-379 (555)
78 PLN02831 Bifunctional GTP cycl 25.1 94 0.002 32.6 4.4 37 47-83 373-409 (450)
79 PF14606 Lipase_GDSL_3: GDSL-l 24.8 4.8E+02 0.01 23.8 8.4 52 245-298 80-133 (178)
80 PRK06552 keto-hydroxyglutarate 24.7 5.7E+02 0.012 23.8 10.4 88 42-146 118-210 (213)
81 COG3858 Predicted glycosyl hyd 24.6 75 0.0016 32.9 3.4 117 64-190 149-275 (423)
82 PF13670 PepSY_2: Peptidase pr 24.2 1.2E+02 0.0026 23.6 3.8 22 41-63 29-50 (83)
83 TIGR03628 arch_S11P archaeal r 24.1 1.7E+02 0.0037 24.8 5.0 36 44-79 53-101 (114)
84 PF15240 Pro-rich: Proline-ric 24.0 48 0.001 30.4 1.7 17 9-25 3-19 (179)
85 PRK13586 1-(5-phosphoribosyl)- 23.8 5.1E+02 0.011 24.4 8.8 70 41-125 30-108 (232)
86 CHL00041 rps11 ribosomal prote 23.5 1.8E+02 0.0039 24.6 5.1 35 45-79 64-103 (116)
87 cd02871 GH18_chitinase_D-like 23.4 2.5E+02 0.0054 27.5 6.8 79 67-146 65-146 (312)
88 PRK14024 phosphoribosyl isomer 23.4 5.1E+02 0.011 24.3 8.7 69 42-125 33-110 (241)
89 PF13377 Peripla_BP_3: Peripla 23.1 3.1E+02 0.0066 22.9 6.6 120 48-190 2-133 (160)
90 COG2113 ProX ABC-type proline/ 22.4 1.9E+02 0.004 28.7 5.7 37 48-85 52-89 (302)
91 cd06598 GH31_transferase_CtsZ 22.1 7.5E+02 0.016 24.2 11.1 26 183-208 71-96 (317)
92 PF02055 Glyco_hydro_30: O-Gly 22.1 8.5E+02 0.018 25.8 10.8 86 73-158 166-278 (496)
93 TIGR02690 resist_ArsH arsenica 22.1 4.5E+02 0.0097 24.7 7.9 75 95-193 44-118 (219)
94 PRK02710 plastocyanin; Provisi 21.9 78 0.0017 26.6 2.5 22 1-22 1-22 (119)
95 COG5014 Predicted Fe-S oxidore 21.7 99 0.0022 28.5 3.2 26 40-65 73-102 (228)
96 KOG0093 GTPase Rab3, small G p 21.4 1.6E+02 0.0035 26.5 4.5 59 57-122 71-136 (193)
97 PRK09607 rps11p 30S ribosomal 21.2 2.1E+02 0.0044 25.0 5.0 36 44-79 60-108 (132)
98 PRK09997 hydroxypyruvate isome 21.0 6.8E+02 0.015 23.3 13.1 50 30-80 5-58 (258)
99 cd06418 GH25_BacA-like BacA is 20.8 6.8E+02 0.015 23.2 11.8 106 41-151 21-143 (212)
100 PRK05309 30S ribosomal protein 20.6 2.2E+02 0.0048 24.5 5.1 36 44-79 67-107 (128)
101 cd04734 OYE_like_3_FMN Old yel 20.5 8.5E+02 0.018 24.2 15.8 129 168-301 63-206 (343)
102 PF00135 COesterase: Carboxyle 20.5 45 0.00098 34.3 1.0 19 92-110 188-206 (535)
103 PRK14114 1-(5-phosphoribosyl)- 20.0 4.4E+02 0.0095 25.0 7.5 70 41-125 30-108 (241)
104 PRK13585 1-(5-phosphoribosyl)- 20.0 5.8E+02 0.013 23.5 8.3 70 41-125 32-111 (241)
No 1
>PF00332 Glyco_hydro_17: Glycosyl hydrolases family 17; InterPro: IPR000490 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 17 GH17 from CAZY comprises enzymes with several known activities; endo-1,3-beta-glucosidase (3.2.1.39 from EC); lichenase (3.2.1.73 from EC); exo-1,3-glucanase (3.2.1.58 from EC). Currently these enzymes have only been found in plants and in fungi. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1AQ0_B 1GHR_A 1GHS_B 2CYG_A 3UR8_A 3UR7_B 3EM5_C 3F55_D.
Probab=100.00 E-value=6e-86 Score=645.00 Aligned_cols=309 Identities=53% Similarity=0.911 Sum_probs=254.8
Q ss_pred ceEEecCCCCCCCCHHHHHHHHhcCCCCEEEEccCChHHHHHHhhCCCeEEEEeccccccccC-CHHHHHHHHHhccccc
Q 017202 29 LGVNYGQVANNLPPPDKVVDLLSSLKITKSRIYDTNPQVLTAFANSNIELIVTVENQMLAVLV-DPQQALQWVSTHIKPY 107 (375)
Q Consensus 29 ~GinYg~~~~n~ps~~~v~~~lk~~~~~~VRlY~~d~~vL~A~~~~gikV~lGV~n~~l~~la-~~~~A~~wv~~~v~~~ 107 (375)
+|||||+.++|+|+|.+|++++|+++|++||||++|+++|+|++++||+|++||+|+++.+++ ++..|..|+++||.+|
T Consensus 1 iGvnyG~~~~nlp~p~~vv~l~ks~~i~~vri~d~~~~iL~a~a~S~i~v~v~vpN~~l~~la~~~~~A~~Wv~~nv~~~ 80 (310)
T PF00332_consen 1 IGVNYGRVGNNLPSPCKVVSLLKSNGITKVRIYDADPSILRAFAGSGIEVMVGVPNEDLASLASSQSAAGSWVRTNVLPY 80 (310)
T ss_dssp EEEEE---SSS---HHHHHHHHHHTT--EEEESS--HHHHHHHTTS--EEEEEE-GGGHHHHHHHHHHHHHHHHHHTCTC
T ss_pred CeEeccCccCCCCCHHHHHHHHHhcccccEEeecCcHHHHHHHhcCCceeeeccChHHHHHhccCHHHHhhhhhhccccc
Confidence 699999999999999999999999999999999999999999999999999999999999999 8889999999999999
Q ss_pred CCCceEEEEEeccccccCCCchhHHhHHHHHHHHHHHHHhcCCCCceeEecccccccccccCCCCCCccchhhHHHHHHH
Q 017202 108 FPATKITGIAVGNEVFTDDDTSLIQNLVPATVSIHGALVQLGLDKYIQVSTPNSLAVLEESYPPSAGSFKTEVAGIMSQY 187 (375)
Q Consensus 108 ~~~~~I~~I~VGNE~l~~~~~~~~~~Lv~am~~v~~aL~~~gl~~~IkVsT~~~~~v~~~~~pPS~g~F~~~~~~~l~~~ 187 (375)
+|.++|++|+||||++..... ..|+|+|+++|++|++.||+++|||+|++.++++..+||||.|.|++++.++|.++
T Consensus 81 ~~~~~i~~i~VGnEv~~~~~~---~~lvpAm~ni~~aL~~~~L~~~IkVst~~~~~vl~~s~PPS~g~F~~~~~~~~~~~ 157 (310)
T PF00332_consen 81 LPAVNIRYIAVGNEVLTGTDN---AYLVPAMQNIHNALTAAGLSDQIKVSTPHSMDVLSNSFPPSAGVFRSDIASVMDPL 157 (310)
T ss_dssp TTTSEEEEEEEEES-TCCSGG---GGHHHHHHHHHHHHHHTT-TTTSEEEEEEEGGGEEE-SSGGG-EESHHHHHHHHHH
T ss_pred CcccceeeeecccccccCccc---eeeccHHHHHHHHHHhcCcCCcceeccccccccccccCCCccCcccccchhhhhHH
Confidence 999999999999999987532 28999999999999999999899999999999999999999999999999999999
Q ss_pred HHHhhhCCCCeeeeccccccccCCCCccCccccccCCCCCcccCCCCcccchHHHHHHHHHHHHHHHcCCCCceEEEeec
Q 017202 188 LQFLSSTKAPFWINAYTYFAYKDAPNRISLDYALFNPNSGMVDPYTKLHYDNMLYAQVDAAIFAMARLGYNGIEVRVSET 267 (375)
Q Consensus 188 ~dfL~~~~sp~~vNiyPyf~~~~~~~~i~l~~a~f~~~~~~~d~~~~~~y~n~fda~~dav~~al~~~g~~~~~vvItET 267 (375)
++||.+++||+|+|+||||.+..+|.+++||||+|+++...+| +++.|+|+||+|+|++++||+++|+++++|+||||
T Consensus 158 l~fL~~t~spf~vN~yPyfa~~~~~~~~~l~yAlf~~~~~~~D--~~~~y~nlfDa~~da~~~a~~~~g~~~~~vvv~ET 235 (310)
T PF00332_consen 158 LKFLDGTNSPFMVNVYPYFAYQNNPQNISLDYALFQPNSGVVD--GGLAYTNLFDAMVDAVYAAMEKLGFPNVPVVVGET 235 (310)
T ss_dssp HHHHHHHT--EEEE--HHHHHHHSTTTS-HHHHTT-SSS-SEE--TTEEESSHHHHHHHHHHHHHHTTT-TT--EEEEEE
T ss_pred HHHhhccCCCceeccchhhhccCCcccCCcccccccccccccc--cchhhhHHHHHHHHHHHHHHHHhCCCCceeEEecc
Confidence 9999999999999999999999999999999999998877774 48899999999999999999999999999999999
Q ss_pred cCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCCCCCCcccEEEEEeecCCCCCCCCCCCceeeecCCCceeEeeee
Q 017202 268 GWPSKGDPNEVGATVVNAATYNKNLLRRQMANEGTPLRPNMRLEVYLFALFNEDMKPGPTSERNYGLFQPDGTMAYNVGL 347 (375)
Q Consensus 268 GWPs~G~~~~~~As~~na~~y~~~~i~~~~~~~Gtp~rp~~~i~~y~F~~fDe~wK~g~~~E~~wGlf~~d~~~ky~l~~ 347 (375)
||||+|+ ..|+.+||+.|++|+++|+. .|||+||+.++++||||||||+||+++.+|||||||++||+|||+++|
T Consensus 236 GWPs~G~---~~a~~~nA~~~~~nl~~~~~--~gt~~~~~~~~~~y~F~~FdE~~K~~~~~E~~wGlf~~d~~~ky~~~f 310 (310)
T PF00332_consen 236 GWPSAGD---PGATPENAQAYNQNLIKHVL--KGTPLRPGNGIDVYIFEAFDENWKPGPEVERHWGLFYPDGTPKYDLDF 310 (310)
T ss_dssp ---SSSS---TTCSHHHHHHHHHHHHHHCC--GBBSSSBSS---EEES-SB--TTSSSSGGGGG--SB-TTSSBSS----
T ss_pred ccccCCC---CCCCcchhHHHHHHHHHHHh--CCCcccCCCCCeEEEEEEecCcCCCCCcccceeeeECCCCCeecCCCC
Confidence 9999999 67999999999999999997 799999999999999999999999987799999999999999999987
No 2
>COG5309 Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.6e-48 Score=364.22 Aligned_cols=253 Identities=23% Similarity=0.306 Sum_probs=207.2
Q ss_pred ccccceEEecCCCCC--CCCHHHHHHHHhc-CCC-CEEEEccCC----hHHHHHHhhCCCeEEEEeccccccccCCHHHH
Q 017202 25 GVTCLGVNYGQVANN--LPPPDKVVDLLSS-LKI-TKSRIYDTN----PQVLTAFANSNIELIVTVENQMLAVLVDPQQA 96 (375)
Q Consensus 25 ~~~~~GinYg~~~~n--~ps~~~v~~~lk~-~~~-~~VRlY~~d----~~vL~A~~~~gikV~lGV~n~~l~~la~~~~A 96 (375)
+.+..||||+++.++ ||+.+++..+|+. ..+ ..||+|++| ++|++|+...|+||+||||..+..+-+ ..
T Consensus 42 a~g~~~f~l~~~n~dGtCKSa~~~~sDLe~l~~~t~~IR~Y~sDCn~le~v~pAa~~~g~kv~lGiw~tdd~~~~-~~-- 118 (305)
T COG5309 42 ASGFLAFTLGPYNDDGTCKSADQVASDLELLASYTHSIRTYGSDCNTLENVLPAAEASGFKVFLGIWPTDDIHDA-VE-- 118 (305)
T ss_pred cccccceeccccCCCCCCcCHHHHHhHHHHhccCCceEEEeeccchhhhhhHHHHHhcCceEEEEEeeccchhhh-HH--
Confidence 566899999999875 8999999876654 233 399999877 569999999999999999976543322 22
Q ss_pred HHHHHhcccccCCCceEEEEEeccccccCCCchhHHhHHHHHHHHHHHHHhcCCCCceeEecccccccccccCCCCCCcc
Q 017202 97 LQWVSTHIKPYFPATKITGIAVGNEVFTDDDTSLIQNLVPATVSIHGALVQLGLDKYIQVSTPNSLAVLEESYPPSAGSF 176 (375)
Q Consensus 97 ~~wv~~~v~~~~~~~~I~~I~VGNE~l~~~~~~~~~~Lv~am~~v~~aL~~~gl~~~IkVsT~~~~~v~~~~~pPS~g~F 176 (375)
..+...+.+++.++.|++|+||||+|+|++. ++++|+.+|..||.+|+.+|++ .||+|+++|.+|.+
T Consensus 119 -~til~ay~~~~~~d~v~~v~VGnEal~r~~~-tasql~~~I~~vrsav~~agy~--gpV~T~dsw~~~~~--------- 185 (305)
T COG5309 119 -KTILSAYLPYNGWDDVTTVTVGNEALNRNDL-TASQLIEYIDDVRSAVKEAGYD--GPVTTVDSWNVVIN--------- 185 (305)
T ss_pred -HHHHHHHhccCCCCceEEEEechhhhhcCCC-CHHHHHHHHHHHHHHHHhcCCC--CceeecccceeeeC---------
Confidence 1244567888888899999999999999876 5899999999999999999996 58999999999876
Q ss_pred chhhHHHHHHHHHHhhhCCCCeeeeccccccccCCCCccCccccccCCCCCcccCCCCcccchHHHHHHHHHHHHHHHcC
Q 017202 177 KTEVAGIMSQYLQFLSSTKAPFWINAYTYFAYKDAPNRISLDYALFNPNSGMVDPYTKLHYDNMLYAQVDAAIFAMARLG 256 (375)
Q Consensus 177 ~~~~~~~l~~~~dfL~~~~sp~~vNiyPyf~~~~~~~~i~l~~a~f~~~~~~~d~~~~~~y~n~fda~~dav~~al~~~g 256 (375)
++.||...|| +|+|.||||+.+...+. . + .++..|+.-++.+ +
T Consensus 186 ----np~l~~~SDf-------ia~N~~aYwd~~~~a~~------------------~---~-~f~~~q~e~vqsa----~ 228 (305)
T COG5309 186 ----NPELCQASDF-------IAANAHAYWDGQTVANA------------------A---G-TFLLEQLERVQSA----C 228 (305)
T ss_pred ----ChHHhhhhhh-------hhcccchhccccchhhh------------------h---h-HHHHHHHHHHHHh----c
Confidence 2578999999 99999999998853320 0 1 2344556655544 3
Q ss_pred CCCceEEEeeccCCCCCCCCC-CCCCHHHHHHHHHHHHHHHHhcCCCCCCCCCcccEEEEEeecCCCCC-CC-CCCCcee
Q 017202 257 YNGIEVRVSETGWPSKGDPNE-VGATVVNAATYNKNLLRRQMANEGTPLRPNMRLEVYLFALFNEDMKP-GP-TSERNYG 333 (375)
Q Consensus 257 ~~~~~vvItETGWPs~G~~~~-~~As~~na~~y~~~~i~~~~~~~Gtp~rp~~~i~~y~F~~fDe~wK~-g~-~~E~~wG 333 (375)
..+|++||+||||||.|..++ +.||++||+.|+++++|.+++ .++++|+||+|||+||. |. ++|+|||
T Consensus 229 g~~k~~~v~EtGWPS~G~~~G~a~pS~anq~~~~~~i~~~~~~---------~G~d~fvfeAFdd~WK~~~~y~VEkywG 299 (305)
T COG5309 229 GTKKTVWVTETGWPSDGRTYGSAVPSVANQKIAVQEILNALRS---------CGYDVFVFEAFDDDWKADGSYGVEKYWG 299 (305)
T ss_pred CCCccEEEeeccCCCCCCccCCcCCChhHHHHHHHHHHhhhhc---------cCccEEEeeeccccccCccccchhhcee
Confidence 345999999999999999988 789999999999999999984 58999999999999995 44 7999999
Q ss_pred eecCCC
Q 017202 334 LFQPDG 339 (375)
Q Consensus 334 lf~~d~ 339 (375)
+++.++
T Consensus 300 v~~s~~ 305 (305)
T COG5309 300 VLSSDR 305 (305)
T ss_pred eeccCC
Confidence 999875
No 3
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=99.05 E-value=1.3e-08 Score=100.99 Aligned_cols=249 Identities=16% Similarity=0.180 Sum_probs=123.1
Q ss_pred HHHHHHHHhcCCCCEEEE--c-cC------C-hHH---HHHHhhCCCeEEEEecccc---------cc-ccC--CHHHHH
Q 017202 43 PDKVVDLLSSLKITKSRI--Y-DT------N-PQV---LTAFANSNIELIVTVENQM---------LA-VLV--DPQQAL 97 (375)
Q Consensus 43 ~~~v~~~lk~~~~~~VRl--Y-~~------d-~~v---L~A~~~~gikV~lGV~n~~---------l~-~la--~~~~A~ 97 (375)
..++.++||.+|++.||+ | ++ | ..+ .+.+++.||+|+|-.-.+| ++ +.. +..+..
T Consensus 26 ~~d~~~ilk~~G~N~vRlRvwv~P~~~g~~~~~~~~~~akrak~~Gm~vlldfHYSD~WaDPg~Q~~P~aW~~~~~~~l~ 105 (332)
T PF07745_consen 26 EKDLFQILKDHGVNAVRLRVWVNPYDGGYNDLEDVIALAKRAKAAGMKVLLDFHYSDFWADPGKQNKPAAWANLSFDQLA 105 (332)
T ss_dssp B--HHHHHHHTT--EEEEEE-SS-TTTTTTSHHHHHHHHHHHHHTT-EEEEEE-SSSS--BTTB-B--TTCTSSSHHHHH
T ss_pred CCCHHHHHHhcCCCeEEEEeccCCcccccCCHHHHHHHHHHHHHCCCeEEEeecccCCCCCCCCCCCCccCCCCCHHHHH
Confidence 367899999999986665 4 21 2 233 4556679999999987653 11 111 111111
Q ss_pred HHHHhc----ccccC-CCceEEEEEeccccccC-----CCchhHHhHHHHHHHHHHHHHhcCCCCceeEecccccccccc
Q 017202 98 QWVSTH----IKPYF-PATKITGIAVGNEVFTD-----DDTSLIQNLVPATVSIHGALVQLGLDKYIQVSTPNSLAVLEE 167 (375)
Q Consensus 98 ~wv~~~----v~~~~-~~~~I~~I~VGNE~l~~-----~~~~~~~~Lv~am~~v~~aL~~~gl~~~IkVsT~~~~~v~~~ 167 (375)
+-|.++ +..+- -+..+..|-||||.-.+ +...-.+.+...++...+++|+..- ++||-.-.. +
T Consensus 106 ~~v~~yT~~vl~~l~~~G~~pd~VQVGNEin~Gmlwp~g~~~~~~~~a~ll~ag~~AVr~~~p--~~kV~lH~~-----~ 178 (332)
T PF07745_consen 106 KAVYDYTKDVLQALKAAGVTPDMVQVGNEINNGMLWPDGKPSNWDNLAKLLNAGIKAVREVDP--NIKVMLHLA-----N 178 (332)
T ss_dssp HHHHHHHHHHHHHHHHTT--ESEEEESSSGGGESTBTTTCTT-HHHHHHHHHHHHHHHHTHSS--TSEEEEEES------
T ss_pred HHHHHHHHHHHHHHHHCCCCccEEEeCccccccccCcCCCccCHHHHHHHHHHHHHHHHhcCC--CCcEEEEEC-----C
Confidence 112222 12111 23668889999998542 1222356788888888888887554 345432211 1
Q ss_pred cCCCCCCccchhhHHHHHHHHHHhhhCCCCeeeeccccccccCCCCccCccccccCCCCCcccCCCCcccchHHHHHHHH
Q 017202 168 SYPPSAGSFKTEVAGIMSQYLQFLSSTKAPFWINAYTYFAYKDAPNRISLDYALFNPNSGMVDPYTKLHYDNMLYAQVDA 247 (375)
Q Consensus 168 ~~pPS~g~F~~~~~~~l~~~~dfL~~~~sp~~vNiyPyf~~~~~~~~i~l~~a~f~~~~~~~d~~~~~~y~n~fda~~da 247 (375)
+-....|+-=+..+...-+|| ..++++.||||... + +-+...++.
T Consensus 179 --~~~~~~~~~~f~~l~~~g~d~-----DviGlSyYP~w~~~-----l-----------------------~~l~~~l~~ 223 (332)
T PF07745_consen 179 --GGDNDLYRWFFDNLKAAGVDF-----DVIGLSYYPFWHGT-----L-----------------------EDLKNNLND 223 (332)
T ss_dssp --TTSHHHHHHHHHHHHHTTGG------SEEEEEE-STTST------H-----------------------HHHHHHHHH
T ss_pred --CCchHHHHHHHHHHHhcCCCc-----ceEEEecCCCCcch-----H-----------------------HHHHHHHHH
Confidence 100001110001111112344 44999999999872 1 112223332
Q ss_pred HHHHHHHcCCCCceEEEeeccCCCCCC-----CCC---------CCCCHHHHHHHHHHHHHHHHhcCCCCCCCCCcccEE
Q 017202 248 AIFAMARLGYNGIEVRVSETGWPSKGD-----PNE---------VGATVVNAATYNKNLLRRQMANEGTPLRPNMRLEVY 313 (375)
Q Consensus 248 v~~al~~~g~~~~~vvItETGWPs~G~-----~~~---------~~As~~na~~y~~~~i~~~~~~~Gtp~rp~~~i~~y 313 (375)
+. ++ | +|+|+|.|||||..-. .+. -.+|++.|+.|++++++.+.+..+ +.++-+|
T Consensus 224 l~---~r--y-~K~V~V~Et~yp~t~~d~D~~~n~~~~~~~~~~yp~t~~GQ~~~l~~l~~~v~~~p~-----~~g~Gvf 292 (332)
T PF07745_consen 224 LA---SR--Y-GKPVMVVETGYPWTLDDGDGTGNIIGATSLISGYPATPQGQADFLRDLINAVKNVPN-----GGGLGVF 292 (332)
T ss_dssp HH---HH--H-T-EEEEEEE---SBS--SSSS--SSSSSTGGTTS-SSHHHHHHHHHHHHHHHHTS-------TTEEEEE
T ss_pred HH---HH--h-CCeeEEEeccccccccccccccccCccccccCCCCCCHHHHHHHHHHHHHHHHHhcc-----CCeEEEE
Confidence 22 22 2 6899999999999822 111 136899999999999999885321 2356677
Q ss_pred EEEee-cCCC-----CCCCCCCCceeeecCCCceeEee
Q 017202 314 LFALF-NEDM-----KPGPTSERNYGLFQPDGTMAYNV 345 (375)
Q Consensus 314 ~F~~f-De~w-----K~g~~~E~~wGlf~~d~~~ky~l 345 (375)
+-|.. -..+ ..|...|.. +||+.+|++--.|
T Consensus 293 YWeP~w~~~~~~~~~~~g~~w~n~-~lFD~~g~~l~sl 329 (332)
T PF07745_consen 293 YWEPAWIPVENGWDWGGGSSWDNQ-ALFDFNGNALPSL 329 (332)
T ss_dssp EE-TT-GGGTTHHHHTTTSSSSBG-SSB-TTSBB-GGG
T ss_pred eeccccccCCcccccCCCCCcccc-ccCCCCCCCchHh
Confidence 66532 2211 233345544 8999888875443
No 4
>COG3867 Arabinogalactan endo-1,4-beta-galactosidase [Carbohydrate transport and metabolism]
Probab=98.71 E-value=3.7e-07 Score=88.10 Aligned_cols=251 Identities=15% Similarity=0.213 Sum_probs=140.3
Q ss_pred HHHHHHHHhcCCCCEEEE--c----cCC--------------hHHHHHHhhCCCeEEEEeccccccccC-CHHHHHHHHH
Q 017202 43 PDKVVDLLSSLKITKSRI--Y----DTN--------------PQVLTAFANSNIELIVTVENQMLAVLV-DPQQALQWVS 101 (375)
Q Consensus 43 ~~~v~~~lk~~~~~~VRl--Y----~~d--------------~~vL~A~~~~gikV~lGV~n~~l~~la-~~~~A~~wv~ 101 (375)
.+++.++||.+|++.||+ | |.| -++-+.+++.||||++-.-.+|.=+-. -+..-+.|..
T Consensus 65 ~qD~~~iLK~~GvNyvRlRvwndP~dsngn~yggGnnD~~k~ieiakRAk~~GmKVl~dFHYSDfwaDPakQ~kPkaW~~ 144 (403)
T COG3867 65 RQDALQILKNHGVNYVRLRVWNDPYDSNGNGYGGGNNDLKKAIEIAKRAKNLGMKVLLDFHYSDFWADPAKQKKPKAWEN 144 (403)
T ss_pred HHHHHHHHHHcCcCeEEEEEecCCccCCCCccCCCcchHHHHHHHHHHHHhcCcEEEeeccchhhccChhhcCCcHHhhh
Confidence 466788999999986665 4 333 124455667999999988765421100 1111112321
Q ss_pred hc-------ccccC---------CCceEEEEEeccccccC-----CCchhHHhHHHHHHHHHHHHHhcCCCCceeEeccc
Q 017202 102 TH-------IKPYF---------PATKITGIAVGNEVFTD-----DDTSLIQNLVPATVSIHGALVQLGLDKYIQVSTPN 160 (375)
Q Consensus 102 ~~-------v~~~~---------~~~~I~~I~VGNE~l~~-----~~~~~~~~Lv~am~~v~~aL~~~gl~~~IkVsT~~ 160 (375)
-+ |-.|- -...+..|=||||.-.+ ++..-...+...++.--+++|... ..|||---
T Consensus 145 l~fe~lk~avy~yTk~~l~~m~~eGi~pdmVQVGNEtn~gflwp~Ge~~~f~k~a~L~n~g~~avrev~--p~ikv~lH- 221 (403)
T COG3867 145 LNFEQLKKAVYSYTKYVLTTMKKEGILPDMVQVGNETNGGFLWPDGEGRNFDKMAALLNAGIRAVREVS--PTIKVALH- 221 (403)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHcCCCccceEeccccCCceeccCCCCcChHHHHHHHHHHhhhhhhcC--CCceEEEE-
Confidence 11 11110 12456789999998432 222123455555566666666533 24665432
Q ss_pred ccccccccCCCCCCccchhhHHHHHHHHHHhhhCCCCeeeeccccccccCCCCccCccccccCCCCCcccCCCCcccchH
Q 017202 161 SLAVLEESYPPSAGSFKTEVAGIMSQYLQFLSSTKAPFWINAYTYFAYKDAPNRISLDYALFNPNSGMVDPYTKLHYDNM 240 (375)
Q Consensus 161 ~~~v~~~~~pPS~g~F~~~~~~~l~~~~dfL~~~~sp~~vNiyPyf~~~~~~~~i~l~~a~f~~~~~~~d~~~~~~y~n~ 240 (375)
+.+ |-..+.|+-=...+-+.-+|| ..|+.--||||.+.-+ ||
T Consensus 222 ----la~--g~~n~~y~~~fd~ltk~nvdf-----DVig~SyYpyWhgtl~---------------------------nL 263 (403)
T COG3867 222 ----LAE--GENNSLYRWIFDELTKRNVDF-----DVIGSSYYPYWHGTLN---------------------------NL 263 (403)
T ss_pred ----ecC--CCCCchhhHHHHHHHHcCCCc-----eEEeeeccccccCcHH---------------------------HH
Confidence 222 333445552222334555566 3488999999998521 11
Q ss_pred HHHHHHHHHHHHHHcCCCCceEEEeeccC--------------CCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCCCC
Q 017202 241 LYAQVDAAIFAMARLGYNGIEVRVSETGW--------------PSKGDPNEVGATVVNAATYNKNLLRRQMANEGTPLRP 306 (375)
Q Consensus 241 fda~~dav~~al~~~g~~~~~vvItETGW--------------Ps~G~~~~~~As~~na~~y~~~~i~~~~~~~Gtp~rp 306 (375)
...++.+-. --+|.|+|.||+. |+.+...+-..++.-|++|.+++++.+... |.-
T Consensus 264 -~~nl~dia~------rY~K~VmV~Etay~yTlEdgDg~~Nt~~~~~~t~~ypitVQGQat~vrDvie~V~nv---p~~- 332 (403)
T COG3867 264 -TTNLNDIAS------RYHKDVMVVETAYTYTLEDGDGHENTFPSSEQTGGYPITVQGQATFVRDVIEAVKNV---PKS- 332 (403)
T ss_pred -HhHHHHHHH------HhcCeEEEEEecceeeeccCCCCCCcCCcccccCCCceEEechhhHHHHHHHHHHhC---CCC-
Confidence 112222211 1278999999998 555432223467899999999999998743 221
Q ss_pred CCcccEEEEE------------------e-ecCCCCCCCCCCCceeeecCCCceeEeeee
Q 017202 307 NMRLEVYLFA------------------L-FNEDMKPGPTSERNYGLFQPDGTMAYNVGL 347 (375)
Q Consensus 307 ~~~i~~y~F~------------------~-fDe~wK~g~~~E~~wGlf~~d~~~ky~l~~ 347 (375)
++.-+|+.| . -.|+|+.|..++.. -||+.+|.|-.+|++
T Consensus 333 -~GlGvFYWEp~wipv~~g~gwat~~~~~y~~e~w~~gsavdNq-aLfdf~G~~LPSl~v 390 (403)
T COG3867 333 -NGLGVFYWEPAWIPVVLGSGWATSYAAKYDPENWGEGSAVDNQ-ALFDFNGHPLPSLNV 390 (403)
T ss_pred -CceEEEEecccceeccCCCccccchhhccCcccccCCCccchh-hhhhccCCcCcchhh
Confidence 134455444 1 23667766544444 688888888777765
No 5
>PF03198 Glyco_hydro_72: Glucanosyltransferase; InterPro: IPR004886 This family is a group of yeast glycolipid proteins anchored to the membrane. It includes Candida albicans (Yeast) pH-regulated protein, which is required for apical growth and plays a role in morphogenesis and Saccharomyces cerevisiae glycolipid anchored surface protein.; PDB: 2W61_A 2W62_A 2W63_A.
Probab=98.54 E-value=2.1e-06 Score=83.97 Aligned_cols=128 Identities=24% Similarity=0.381 Sum_probs=74.0
Q ss_pred ceEEecCCCCC--------CCCHHH---HHHHHhcCCCCEEEEccCCh-----HHHHHHhhCCCeEEEEeccccccccC-
Q 017202 29 LGVNYGQVANN--------LPPPDK---VVDLLSSLKITKSRIYDTNP-----QVLTAFANSNIELIVTVENQMLAVLV- 91 (375)
Q Consensus 29 ~GinYg~~~~n--------~ps~~~---v~~~lk~~~~~~VRlY~~d~-----~vL~A~~~~gikV~lGV~n~~l~~la- 91 (375)
.||.|.+-++. |..++. -+.+||+.|++.||+|..|| +-+++|++.||=|++.+... -.++.
T Consensus 30 kGVaYQp~~~~~~~~~~DPLad~~~C~rDi~~l~~LgiNtIRVY~vdp~~nHd~CM~~~~~aGIYvi~Dl~~p-~~sI~r 108 (314)
T PF03198_consen 30 KGVAYQPGGSSEPSNYIDPLADPEACKRDIPLLKELGINTIRVYSVDPSKNHDECMSAFADAGIYVILDLNTP-NGSINR 108 (314)
T ss_dssp EEEE----------SS--GGG-HHHHHHHHHHHHHHT-SEEEES---TTS--HHHHHHHHHTT-EEEEES-BT-TBS--T
T ss_pred eeEEcccCCCCCCccCcCcccCHHHHHHhHHHHHHcCCCEEEEEEeCCCCCHHHHHHHHHhCCCEEEEecCCC-CccccC
Confidence 89999886551 223332 24588899999999998874 37899999999999999854 22332
Q ss_pred -CH------HHHHHHHHhcccccCCCceEEEEEeccccccCC-CchhHHhHHHHHHHHHHHHHhcCCCCceeEecc
Q 017202 92 -DP------QQALQWVSTHIKPYFPATKITGIAVGNEVFTDD-DTSLIQNLVPATVSIHGALVQLGLDKYIQVSTP 159 (375)
Q Consensus 92 -~~------~~A~~wv~~~v~~~~~~~~I~~I~VGNE~l~~~-~~~~~~~Lv~am~~v~~aL~~~gl~~~IkVsT~ 159 (375)
++ ..-.+ ...-|..|..-.++-+..+|||++... ....++.+=.++|.+|+-+++.++. .|+|+-+
T Consensus 109 ~~P~~sw~~~l~~~-~~~vid~fa~Y~N~LgFf~GNEVin~~~~t~aap~vKAavRD~K~Yi~~~~~R-~IPVGYs 182 (314)
T PF03198_consen 109 SDPAPSWNTDLLDR-YFAVIDAFAKYDNTLGFFAGNEVINDASNTNAAPYVKAAVRDMKAYIKSKGYR-SIPVGYS 182 (314)
T ss_dssp TS------HHHHHH-HHHHHHHHTT-TTEEEEEEEESSS-STT-GGGHHHHHHHHHHHHHHHHHSSS-----EEEE
T ss_pred CCCcCCCCHHHHHH-HHHHHHHhccCCceEEEEecceeecCCCCcccHHHHHHHHHHHHHHHHhcCCC-CCceeEE
Confidence 22 11111 111233333337899999999999763 2335778888999999999999986 4888854
No 6
>PRK10150 beta-D-glucuronidase; Provisional
Probab=98.26 E-value=0.00022 Score=76.25 Aligned_cols=254 Identities=12% Similarity=0.057 Sum_probs=139.2
Q ss_pred ceEEecCCC---CCCCCHHHH---HHHHhcCCCCEEEEcc--CChHHHHHHhhCCCeEEEEecccc--------------
Q 017202 29 LGVNYGQVA---NNLPPPDKV---VDLLSSLKITKSRIYD--TNPQVLTAFANSNIELIVTVENQM-------------- 86 (375)
Q Consensus 29 ~GinYg~~~---~n~ps~~~v---~~~lk~~~~~~VRlY~--~d~~vL~A~~~~gikV~lGV~n~~-------------- 86 (375)
.|+|+-... ....+.+.+ +++||..|++.||+-. .++..+.+|...||=|+.=++...
T Consensus 295 rG~~~h~~~~~~G~a~~~~~~~~d~~l~K~~G~N~vR~sh~p~~~~~~~~cD~~GllV~~E~p~~~~~~~~~~~~~~~~~ 374 (604)
T PRK10150 295 KGFGKHEDADIRGKGLDEVLNVHDHNLMKWIGANSFRTSHYPYSEEMLDLADRHGIVVIDETPAVGLNLSFGAGLEAGNK 374 (604)
T ss_pred EeeeccCCCCccCCcCCHHHHHHHHHHHHHCCCCEEEeccCCCCHHHHHHHHhcCcEEEEeccccccccccccccccccc
Confidence 577763221 112344443 4578999999999943 357899999999998885443210
Q ss_pred -ccccC----C---HHHHHHHHHhcccccCCCceEEEEEeccccccCCCchhHHhHHHHHHHHHHHHHhcCCCCceeEec
Q 017202 87 -LAVLV----D---PQQALQWVSTHIKPYFPATKITGIAVGNEVFTDDDTSLIQNLVPATVSIHGALVQLGLDKYIQVST 158 (375)
Q Consensus 87 -l~~la----~---~~~A~~wv~~~v~~~~~~~~I~~I~VGNE~l~~~~~~~~~~Lv~am~~v~~aL~~~gl~~~IkVsT 158 (375)
..... + .....+-+++.|..+.-.-.|..=++|||.-... ...-..++.+.+.+++.. ..=+|+.
T Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~mv~r~~NHPSIi~Ws~gNE~~~~~-----~~~~~~~~~l~~~~k~~D--ptR~vt~ 447 (604)
T PRK10150 375 PKETYSEEAVNGETQQAHLQAIRELIARDKNHPSVVMWSIANEPASRE-----QGAREYFAPLAELTRKLD--PTRPVTC 447 (604)
T ss_pred ccccccccccchhHHHHHHHHHHHHHHhccCCceEEEEeeccCCCccc-----hhHHHHHHHHHHHHHhhC--CCCceEE
Confidence 00010 0 1112222444555554334578999999974321 122234444445554433 2224554
Q ss_pred ccccccccccCCCCCCccchhhHHHHHHHHHHhhhCCCCeeeeccccccccCCCCccCccccccCCCCCcccCCCCcccc
Q 017202 159 PNSLAVLEESYPPSAGSFKTEVAGIMSQYLQFLSSTKAPFWINAYTYFAYKDAPNRISLDYALFNPNSGMVDPYTKLHYD 238 (375)
Q Consensus 159 ~~~~~v~~~~~pPS~g~F~~~~~~~l~~~~dfL~~~~sp~~vNiyPyf~~~~~~~~i~l~~a~f~~~~~~~d~~~~~~y~ 238 (375)
+..+. . +|.. ..+.+.+|+ ++.|.|+=|-..... . . ...
T Consensus 448 ~~~~~---~--~~~~--------~~~~~~~Dv-------~~~N~Y~~wy~~~~~--~----~---------------~~~ 486 (604)
T PRK10150 448 VNVMF---A--TPDT--------DTVSDLVDV-------LCLNRYYGWYVDSGD--L----E---------------TAE 486 (604)
T ss_pred Eeccc---C--Cccc--------ccccCcccE-------EEEcccceecCCCCC--H----H---------------HHH
Confidence 43110 0 1110 112345788 889987643321100 0 0 001
Q ss_pred hHHHHHHHHHHHHHHHcCCCCceEEEeeccCCCCCC----CCCCCCCHHHHHHHHHHHHHHHHhcCCCCCCCCCcccEEE
Q 017202 239 NMLYAQVDAAIFAMARLGYNGIEVRVSETGWPSKGD----PNEVGATVVNAATYNKNLLRRQMANEGTPLRPNMRLEVYL 314 (375)
Q Consensus 239 n~fda~~dav~~al~~~g~~~~~vvItETGWPs~G~----~~~~~As~~na~~y~~~~i~~~~~~~Gtp~rp~~~i~~y~ 314 (375)
..++..++. ..+ .+ +||++++|.|+.+.-+ .+ ..-+.+.|..|++...+.+.+ +|. -+-.|+
T Consensus 487 ~~~~~~~~~----~~~-~~-~kP~~isEyg~~~~~~~h~~~~-~~~~ee~q~~~~~~~~~~~~~------~p~-~~G~~i 552 (604)
T PRK10150 487 KVLEKELLA----WQE-KL-HKPIIITEYGADTLAGLHSMYD-DMWSEEYQCAFLDMYHRVFDR------VPA-VVGEQV 552 (604)
T ss_pred HHHHHHHHH----HHH-hc-CCCEEEEccCCccccccccCCC-CCCCHHHHHHHHHHHHHHHhc------CCc-eEEEEE
Confidence 112222221 111 12 8999999999866422 11 234789999998877776653 343 556899
Q ss_pred EEeecCCCCCCC--CCCCceeeecCCCceeEe
Q 017202 315 FALFNEDMKPGP--TSERNYGLFQPDGTMAYN 344 (375)
Q Consensus 315 F~~fDe~wK~g~--~~E~~wGlf~~d~~~ky~ 344 (375)
..+||-.+..|. .-..+.||++.||+||-.
T Consensus 553 W~~~D~~~~~g~~~~~g~~~Gl~~~dr~~k~~ 584 (604)
T PRK10150 553 WNFADFATSQGILRVGGNKKGIFTRDRQPKSA 584 (604)
T ss_pred EeeeccCCCCCCcccCCCcceeEcCCCCChHH
Confidence 999996655331 123478999999999954
No 7
>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A ....
Probab=98.08 E-value=0.00083 Score=63.54 Aligned_cols=128 Identities=17% Similarity=0.119 Sum_probs=81.3
Q ss_pred cceEEecCCCCCCCCHHHHHHHHhcCCCCEEEEccC-------------C-------hHHHHHHhhCCCeEEEEeccc--
Q 017202 28 CLGVNYGQVANNLPPPDKVVDLLSSLKITKSRIYDT-------------N-------PQVLTAFANSNIELIVTVENQ-- 85 (375)
Q Consensus 28 ~~GinYg~~~~n~ps~~~v~~~lk~~~~~~VRlY~~-------------d-------~~vL~A~~~~gikV~lGV~n~-- 85 (375)
..|+|-. ..+.. ..++..+.+++.|++.|||.-. + ..+|+++++.||+|+|.+...
T Consensus 10 ~~G~n~~-w~~~~-~~~~~~~~~~~~G~n~VRi~v~~~~~~~~~~~~~~~~~~~~~ld~~v~~a~~~gi~vild~h~~~~ 87 (281)
T PF00150_consen 10 WRGFNTH-WYNPS-ITEADFDQLKALGFNTVRIPVGWEAYQEPNPGYNYDETYLARLDRIVDAAQAYGIYVILDLHNAPG 87 (281)
T ss_dssp EEEEEET-TSGGG-SHHHHHHHHHHTTESEEEEEEESTSTSTTSTTTSBTHHHHHHHHHHHHHHHHTT-EEEEEEEESTT
T ss_pred eeeeecc-cCCCC-CHHHHHHHHHHCCCCEEEeCCCHHHhcCCCCCccccHHHHHHHHHHHHHHHhCCCeEEEEeccCcc
Confidence 4566665 22222 6678889999999999999711 1 147889999999999998863
Q ss_pred ---cccccCCHHHHHHHHHh---ccc-ccCCCceEEEEEeccccccCCCc-----hhHHhHHHHHHHHHHHHHhcCCCCc
Q 017202 86 ---MLAVLVDPQQALQWVST---HIK-PYFPATKITGIAVGNEVFTDDDT-----SLIQNLVPATVSIHGALVQLGLDKY 153 (375)
Q Consensus 86 ---~l~~la~~~~A~~wv~~---~v~-~~~~~~~I~~I~VGNE~l~~~~~-----~~~~~Lv~am~~v~~aL~~~gl~~~ 153 (375)
.............|+.+ .+. .|.....|.++=+.||....... .....+.+.++.+.+++|+.+-...
T Consensus 88 w~~~~~~~~~~~~~~~~~~~~~~~la~~y~~~~~v~~~el~NEP~~~~~~~~w~~~~~~~~~~~~~~~~~~Ir~~~~~~~ 167 (281)
T PF00150_consen 88 WANGGDGYGNNDTAQAWFKSFWRALAKRYKDNPPVVGWELWNEPNGGNDDANWNAQNPADWQDWYQRAIDAIRAADPNHL 167 (281)
T ss_dssp CSSSTSTTTTHHHHHHHHHHHHHHHHHHHTTTTTTEEEESSSSGCSTTSTTTTSHHHTHHHHHHHHHHHHHHHHTTSSSE
T ss_pred ccccccccccchhhHHHHHhhhhhhccccCCCCcEEEEEecCCccccCCccccccccchhhhhHHHHHHHHHHhcCCcce
Confidence 11111223333333332 222 33233457799999999875321 1236788999999999999987643
Q ss_pred eeEe
Q 017202 154 IQVS 157 (375)
Q Consensus 154 IkVs 157 (375)
|-|+
T Consensus 168 i~~~ 171 (281)
T PF00150_consen 168 IIVG 171 (281)
T ss_dssp EEEE
T ss_pred eecC
Confidence 4333
No 8
>smart00633 Glyco_10 Glycosyl hydrolase family 10.
Probab=97.46 E-value=0.02 Score=54.62 Aligned_cols=78 Identities=15% Similarity=0.188 Sum_probs=53.6
Q ss_pred HHHHHcCCCCceEEEeeccCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCCCCCCcccEEEEEeecC-CCCCCCCC
Q 017202 250 FAMARLGYNGIEVRVSETGWPSKGDPNEVGATVVNAATYNKNLLRRQMANEGTPLRPNMRLEVYLFALFNE-DMKPGPTS 328 (375)
Q Consensus 250 ~al~~~g~~~~~vvItETGWPs~G~~~~~~As~~na~~y~~~~i~~~~~~~Gtp~rp~~~i~~y~F~~fDe-~wK~g~~~ 328 (375)
..|++++--+++|+|||.+-|..+ +++.|+.|+++++..+.+. | . ..-+++..+.|. .|.++
T Consensus 173 ~~l~~~~~~g~pi~iTE~dv~~~~-------~~~~qA~~~~~~l~~~~~~---p---~-v~gi~~Wg~~d~~~W~~~--- 235 (254)
T smart00633 173 AALDRFASLGLEIQITELDISGYP-------NPQAQAADYEEVFKACLAH---P---A-VTGVTVWGVTDKYSWLDG--- 235 (254)
T ss_pred HHHHHHHHcCCceEEEEeecCCCC-------cHHHHHHHHHHHHHHHHcC---C---C-eeEEEEeCCccCCcccCC---
Confidence 334444434899999999998753 3488999999999988752 2 2 233555555553 45542
Q ss_pred CCceeeecCCCceeEee
Q 017202 329 ERNYGLFQPDGTMAYNV 345 (375)
Q Consensus 329 E~~wGlf~~d~~~ky~l 345 (375)
.+-|||+.|++||-.+
T Consensus 236 -~~~~L~d~~~~~kpa~ 251 (254)
T smart00633 236 -GAPLLFDANYQPKPAY 251 (254)
T ss_pred -CCceeECCCCCCChhh
Confidence 4679999999998653
No 9
>PF02836 Glyco_hydro_2_C: Glycosyl hydrolases family 2, TIM barrel domain; InterPro: IPR006103 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities; beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. Beta-galactosidase from E. coli has a TIM-barrel-like core surrounded by four other largely beta domains [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3CMG_A 3FN9_C 1YQ2_A 3K4D_B 3LPG_B 3LPF_A 3K4A_B 3K46_B 3GM8_A 3DEC_A ....
Probab=96.98 E-value=0.071 Score=51.84 Aligned_cols=95 Identities=17% Similarity=0.120 Sum_probs=54.9
Q ss_pred cceEEecCCCC---CCCCHHHHH---HHHhcCCCCEEEEcc--CChHHHHHHhhCCCeEEEEeccccc---cc------c
Q 017202 28 CLGVNYGQVAN---NLPPPDKVV---DLLSSLKITKSRIYD--TNPQVLTAFANSNIELIVTVENQML---AV------L 90 (375)
Q Consensus 28 ~~GinYg~~~~---n~ps~~~v~---~~lk~~~~~~VRlY~--~d~~vL~A~~~~gikV~lGV~n~~l---~~------l 90 (375)
..|+|+..... ...+.+.+. ++||..|++.||+.. .++..+.+|...||-|+..++.... .. .
T Consensus 17 l~Gv~~h~~~~~~g~a~~~~~~~~d~~l~k~~G~N~iR~~h~p~~~~~~~~cD~~GilV~~e~~~~~~~~~~~~~~~~~~ 96 (298)
T PF02836_consen 17 LRGVNRHQDYPGLGRAMPDEAMERDLELMKEMGFNAIRTHHYPPSPRFYDLCDELGILVWQEIPLEGHGSWQDFGNCNYD 96 (298)
T ss_dssp EEEEEE-S-BTTTBT---HHHHHHHHHHHHHTT-SEEEETTS--SHHHHHHHHHHT-EEEEE-S-BSCTSSSSTSCTSCT
T ss_pred EEEEeeCcCcccccccCCHHHHHHHHHHHHhcCcceEEcccccCcHHHHHHHhhcCCEEEEeccccccCccccCCccccC
Confidence 46999876432 234555554 467889999999964 3578999999999999988765111 00 0
Q ss_pred C-C---HHHHHHHHHhcccccCCCceEEEEEecccc
Q 017202 91 V-D---PQQALQWVSTHIKPYFPATKITGIAVGNEV 122 (375)
Q Consensus 91 a-~---~~~A~~wv~~~v~~~~~~~~I~~I~VGNE~ 122 (375)
. + .+.+.+.+++.|..+.-.-.|..=.+|||.
T Consensus 97 ~~~~~~~~~~~~~~~~~v~~~~NHPSIi~W~~gNE~ 132 (298)
T PF02836_consen 97 ADDPEFRENAEQELREMVRRDRNHPSIIMWSLGNES 132 (298)
T ss_dssp TTSGGHHHHHHHHHHHHHHHHTT-TTEEEEEEEESS
T ss_pred CCCHHHHHHHHHHHHHHHHcCcCcCchheeecCccC
Confidence 1 1 223334455555555422347788999999
No 10
>PF11790 Glyco_hydro_cc: Glycosyl hydrolase catalytic core; InterPro: IPR024655 This entry represents the glycosyl hydrolase catalytic core of a group of uncharacterised proteins.
Probab=96.73 E-value=0.033 Score=52.91 Aligned_cols=68 Identities=21% Similarity=0.287 Sum_probs=47.8
Q ss_pred CceEEEeeccCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCCCCCCcccEEEEEeecCCCCCCCCCCCceeeecCC
Q 017202 259 GIEVRVSETGWPSKGDPNEVGATVVNAATYNKNLLRRQMANEGTPLRPNMRLEVYLFALFNEDMKPGPTSERNYGLFQPD 338 (375)
Q Consensus 259 ~~~vvItETGWPs~G~~~~~~As~~na~~y~~~~i~~~~~~~Gtp~rp~~~i~~y~F~~fDe~wK~g~~~E~~wGlf~~d 338 (375)
+|||+|||.|+...+ ...+.++++.|++..+..+.+. +. --.++||...+ .+. ++...-.|++.+
T Consensus 165 ~kPIWITEf~~~~~~----~~~~~~~~~~fl~~~~~~ld~~------~~-VeryawF~~~~-~~~---~~~~~~~L~~~~ 229 (239)
T PF11790_consen 165 GKPIWITEFGCWNGG----SQGSDEQQASFLRQALPWLDSQ------PY-VERYAWFGFMN-DGS---GVNPNSALLDAD 229 (239)
T ss_pred CCCEEEEeecccCCC----CCCCHHHHHHHHHHHHHHHhcC------CC-eeEEEeccccc-ccC---CCccccccccCC
Confidence 399999999987722 3588999999999999998742 22 45688888333 322 245555677777
Q ss_pred Cce
Q 017202 339 GTM 341 (375)
Q Consensus 339 ~~~ 341 (375)
|++
T Consensus 230 G~l 232 (239)
T PF11790_consen 230 GSL 232 (239)
T ss_pred CCc
Confidence 644
No 11
>cd02875 GH18_chitobiase Chitobiase (also known as di-N-acetylchitobiase) is a lysosomal glycosidase that hydrolyzes the reducing-end N-acetylglucosamine from the chitobiose core of oligosaccharides during the ordered degradation of asparagine-linked glycoproteins in eukaryotes. Chitobiase can only do so if the asparagine that joins the oligosaccharide to protein is previously removed by a glycosylasparaginase. Chitobiase is therefore the final step in the lysosomal degradation of the protein/carbohydrate linkage component of asparagine-linked glycoproteins. The catalytic domain of chitobiase is an eight-stranded alpha/beta barrel fold similar to that of other family 18 glycosyl hydrolases such as hevamine and chitotriosidase.
Probab=90.54 E-value=4.8 Score=40.53 Aligned_cols=131 Identities=16% Similarity=0.202 Sum_probs=74.4
Q ss_pred CCCEEEEccC-ChHHHHHHhhCCCeEEEEeccccccccCCHHHHHHHHHhc---ccccCCCceEEEEEeccccccCCCch
Q 017202 54 KITKSRIYDT-NPQVLTAFANSNIELIVTVENQMLAVLVDPQQALQWVSTH---IKPYFPATKITGIAVGNEVFTDDDTS 129 (375)
Q Consensus 54 ~~~~VRlY~~-d~~vL~A~~~~gikV~lGV~n~~l~~la~~~~A~~wv~~~---v~~~~~~~~I~~I~VGNE~l~~~~~~ 129 (375)
.+++|-+|+. +++++..+...|++|++..-.. ...+.++..-++++++. +..| .+.+|-+==|-....+..
T Consensus 55 ~~tti~~~~~~~~~~~~~A~~~~v~v~~~~~~~-~~~l~~~~~R~~fi~siv~~~~~~----gfDGIdIDwE~p~~~~~~ 129 (358)
T cd02875 55 KVTTIAIFGDIDDELLCYAHSKGVRLVLKGDVP-LEQISNPTYRTQWIQQKVELAKSQ----FMDGINIDIEQPITKGSP 129 (358)
T ss_pred cceEEEecCCCCHHHHHHHHHcCCEEEEECccC-HHHcCCHHHHHHHHHHHHHHHHHh----CCCeEEEcccCCCCCCcc
Confidence 4688888854 7889999999999999864321 22344554444444433 2333 234444443443221112
Q ss_pred hHHhHHHHHHHHHHHHHhcCCCCceeEecccccccccccCCCCCCccc-hhhHHHHHHHHHHhhhCCCCeeeeccccc
Q 017202 130 LIQNLVPATVSIHGALVQLGLDKYIQVSTPNSLAVLEESYPPSAGSFK-TEVAGIMSQYLQFLSSTKAPFWINAYTYF 206 (375)
Q Consensus 130 ~~~~Lv~am~~v~~aL~~~gl~~~IkVsT~~~~~v~~~~~pPS~g~F~-~~~~~~l~~~~dfL~~~~sp~~vNiyPyf 206 (375)
....++..|+++|++|++.+.. ..++.+..+ .|+..... -++ +.|.+.+|| +.+-.|=|.
T Consensus 130 d~~~~t~llkelr~~l~~~~~~--~~Lsvav~~-------~p~~~~~~~yd~-~~l~~~vD~-------v~lMtYD~h 190 (358)
T cd02875 130 EYYALTELVKETTKAFKKENPG--YQISFDVAW-------SPSCIDKRCYDY-TGIADASDF-------LVVMDYDEQ 190 (358)
T ss_pred hHHHHHHHHHHHHHHHhhcCCC--cEEEEEEec-------CcccccccccCH-HHHHhhCCE-------eeEEeeccc
Confidence 2567899999999999987543 224443322 11111110 122 567888999 666666554
No 12
>PRK10340 ebgA cryptic beta-D-galactosidase subunit alpha; Reviewed
Probab=90.23 E-value=13 Score=42.85 Aligned_cols=97 Identities=18% Similarity=0.214 Sum_probs=57.5
Q ss_pred cceEEecCCCC---CCCCHHHH---HHHHhcCCCCEEEEccC--ChHHHHHHhhCCCeEEEEecccc--------ccccC
Q 017202 28 CLGVNYGQVAN---NLPPPDKV---VDLLSSLKITKSRIYDT--NPQVLTAFANSNIELIVTVENQM--------LAVLV 91 (375)
Q Consensus 28 ~~GinYg~~~~---n~ps~~~v---~~~lk~~~~~~VRlY~~--d~~vL~A~~~~gikV~lGV~n~~--------l~~la 91 (375)
..|+|+-.... ...+++.+ +++||+.|++.||+-.. ++..+.+|...||=|+--++... ...+.
T Consensus 336 lrGvnrh~~~p~~G~a~~~e~~~~dl~lmK~~g~NavR~sHyP~~~~fydlcDe~GllV~dE~~~e~~g~~~~~~~~~~~ 415 (1021)
T PRK10340 336 LHGVNRHDNDHRKGRAVGMDRVEKDIQLMKQHNINSVRTAHYPNDPRFYELCDIYGLFVMAETDVESHGFANVGDISRIT 415 (1021)
T ss_pred EEEeecCCCCcccCccCCHHHHHHHHHHHHHCCCCEEEecCCCCCHHHHHHHHHCCCEEEECCcccccCccccccccccc
Confidence 36787643211 22355554 45778999999999643 46789999999998887542110 01112
Q ss_pred -CH---HHHHHHHHhcccccCCCceEEEEEecccccc
Q 017202 92 -DP---QQALQWVSTHIKPYFPATKITGIAVGNEVFT 124 (375)
Q Consensus 92 -~~---~~A~~wv~~~v~~~~~~~~I~~I~VGNE~l~ 124 (375)
++ +...+-+++.|..+.-.-.|..=++|||.-.
T Consensus 416 ~~p~~~~~~~~~~~~mV~RdrNHPSIi~WslGNE~~~ 452 (1021)
T PRK10340 416 DDPQWEKVYVDRIVRHIHAQKNHPSIIIWSLGNESGY 452 (1021)
T ss_pred CCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccCccc
Confidence 22 1112234445555433345888899999844
No 13
>PF00232 Glyco_hydro_1: Glycosyl hydrolase family 1; InterPro: IPR001360 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 1 GH1 from CAZY comprises enzymes with a number of known activities; beta-glucosidase (3.2.1.21 from EC); beta-galactosidase (3.2.1.23 from EC); 6-phospho-beta-galactosidase (3.2.1.85 from EC); 6-phospho-beta-glucosidase (3.2.1.86 from EC); lactase-phlorizin hydrolase (3.2.1.62 from EC), (3.2.1.108 from EC); beta-mannosidase (3.2.1.25 from EC); myrosinase (3.2.1.147 from EC). ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1QVB_A 3AHY_D 2E9L_A 2ZOX_A 2JFE_X 2E9M_A 3FIZ_A 3FIY_A 3CMJ_A 3FJ0_A ....
Probab=85.83 E-value=0.57 Score=48.64 Aligned_cols=281 Identities=15% Similarity=0.189 Sum_probs=129.5
Q ss_pred HHHHHHHhcCCCCEEEEc--------c-----CC-------hHHHHHHhhCCCeEEEEecccccccc-------CCHHHH
Q 017202 44 DKVVDLLSSLKITKSRIY--------D-----TN-------PQVLTAFANSNIELIVTVENQMLAVL-------VDPQQA 96 (375)
Q Consensus 44 ~~v~~~lk~~~~~~VRlY--------~-----~d-------~~vL~A~~~~gikV~lGV~n~~l~~l-------a~~~~A 96 (375)
++.+++|++.|++..|+= + .| .+++..+...||+.+|.+.--+++.. .++..+
T Consensus 61 ~eDi~l~~~lg~~~yRfsi~W~Ri~P~g~~g~~n~~~~~~Y~~~i~~l~~~gi~P~vtL~H~~~P~~l~~~ggw~~~~~~ 140 (455)
T PF00232_consen 61 KEDIALMKELGVNAYRFSISWSRIFPDGFEGKVNEEGLDFYRDLIDELLENGIEPIVTLYHFDLPLWLEDYGGWLNRETV 140 (455)
T ss_dssp HHHHHHHHHHT-SEEEEE--HHHHSTTSSSSSS-HHHHHHHHHHHHHHHHTT-EEEEEEESS--BHHHHHHTGGGSTHHH
T ss_pred hHHHHHHHhhccceeeeecchhheeecccccccCHhHhhhhHHHHHHHHhhccceeeeeeecccccceeecccccCHHHH
Confidence 566788999999988874 1 12 24889999999999999885554421 122222
Q ss_pred HHHHHhc----ccccCCCceEEEEEeccccccC-------C-----Cc------hhHHhHHHHHHHHHHHHHhcCCCCce
Q 017202 97 LQWVSTH----IKPYFPATKITGIAVGNEVFTD-------D-----DT------SLIQNLVPATVSIHGALVQLGLDKYI 154 (375)
Q Consensus 97 ~~wv~~~----v~~~~~~~~I~~I~VGNE~l~~-------~-----~~------~~~~~Lv~am~~v~~aL~~~gl~~~I 154 (375)
.++.+. +..| + .+|+.-+.=||...- + .. .....++-+-..+.+++++..-. .
T Consensus 141 -~~F~~Ya~~~~~~~-g-d~V~~w~T~NEp~~~~~~~y~~g~~~p~~~~~~~~~~~~h~~l~AHa~A~~~~~~~~~~--~ 215 (455)
T PF00232_consen 141 -DWFARYAEFVFERF-G-DRVKYWITFNEPNVFALLGYLYGGFPPGRDSLKAFYQAAHNLLLAHAKAVKAIKEKYPD--G 215 (455)
T ss_dssp -HHHHHHHHHHHHHH-T-TTBSEEEEEETHHHHHHHHHTSSSSTTCSSTHHHHHHHHHHHHHHHHHHHHHHHHHTCT--S
T ss_pred -HHHHHHHHHHHHHh-C-CCcceEEeccccceeeccccccccccccccccchhhHHHhhHHHHHHHHHHHHhhcccc--e
Confidence 122211 2233 2 457777777887531 0 00 01234555555666777776643 4
Q ss_pred eEeccccccccc--cc---------------------CCCCCCccchhhHHHHH----------HHHHHhhhCCCCeeee
Q 017202 155 QVSTPNSLAVLE--ES---------------------YPPSAGSFKTEVAGIMS----------QYLQFLSSTKAPFWIN 201 (375)
Q Consensus 155 kVsT~~~~~v~~--~~---------------------~pPS~g~F~~~~~~~l~----------~~~dfL~~~~sp~~vN 201 (375)
+|+..+...... +. .|--.|.|...+...+. +-...|..+-+++++|
T Consensus 216 ~IGi~~~~~~~~P~~~~~~d~~~Aa~~~~~~~n~~f~dpi~~G~YP~~~~~~~~~~~~lp~ft~ed~~~ikg~~DFlGiN 295 (455)
T PF00232_consen 216 KIGIALNFSPFYPLSPSPEDDVAAAERADEFHNGWFLDPIFKGDYPEEMKEYLGERGILPEFTEEDKELIKGSIDFLGIN 295 (455)
T ss_dssp EEEEEEEEEEEEESSSSHHHHHHHHHHHHHHHTHHHHHHHHHSSSEHHHHHHHGGGTSSTTSGHHHHHHHTTTTSEEEEE
T ss_pred EEeccccccccCCCCccchhhHHHHHHHHHHhhcccccCchhhcCChHHhhccccccccccccchhhhcccccchhhhhc
Confidence 555544432110 00 01111333222211111 1123344556669999
Q ss_pred ccccccccCCCC-ccCcccc---ccCC---CCCcccCCCCcccchHHHHHHHHHHHHHHHcCCCCceEEEeeccCCCCCC
Q 017202 202 AYTYFAYKDAPN-RISLDYA---LFNP---NSGMVDPYTKLHYDNMLYAQVDAAIFAMARLGYNGIEVRVSETGWPSKGD 274 (375)
Q Consensus 202 iyPyf~~~~~~~-~i~l~~a---~f~~---~~~~~d~~~~~~y~n~fda~~dav~~al~~~g~~~~~vvItETGWPs~G~ 274 (375)
-|.=.--...+. .....+. .+.. ........+-..|-.-+..++.-++ + -++++||+|||.|++....
T Consensus 296 YYt~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~gw~i~P~Gl~~~L~~l~---~--~Y~~~pI~ITENG~~~~~~ 370 (455)
T PF00232_consen 296 YYTSRYVRADPNPSSPPSYDSDAPFGQPYNPGGPTTDWGWEIYPEGLRDVLRYLK---D--RYGNPPIYITENGIGDPDE 370 (455)
T ss_dssp ESEEEEEEESSSSTSSTTHEEEESEEEECETSSEBCTTSTBBETHHHHHHHHHHH---H--HHTSSEEEEEEE---EETT
T ss_pred cccceeeccCccccccccccCCccccccccccccccccCcccccchHhhhhhhhc---c--ccCCCcEEEeccccccccc
Confidence 985332222221 1111111 0100 0000000111112222222222221 1 2567999999999988765
Q ss_pred CCC-CC---CCHHHHHHHHHHHHHHHHhcCCCCCCCCCcccEEEEEeecC-CCCCCCCCCCceeeecCC------CceeE
Q 017202 275 PNE-VG---ATVVNAATYNKNLLRRQMANEGTPLRPNMRLEVYLFALFNE-DMKPGPTSERNYGLFQPD------GTMAY 343 (375)
Q Consensus 275 ~~~-~~---As~~na~~y~~~~i~~~~~~~Gtp~rp~~~i~~y~F~~fDe-~wK~g~~~E~~wGlf~~d------~~~ky 343 (375)
... .. --..--+.++..+.+.+.. |-+ -.-+|..++.|- .|.. +..+.|||++.| |+||-
T Consensus 371 ~~~~~v~D~~Ri~yl~~hl~~v~~Ai~d--Gv~-----V~GY~~WSl~Dn~Ew~~--Gy~~rfGl~~VD~~~~~~R~pK~ 441 (455)
T PF00232_consen 371 VDDGKVDDDYRIDYLQDHLNQVLKAIED--GVN-----VRGYFAWSLLDNFEWAE--GYKKRFGLVYVDFFDTLKRTPKK 441 (455)
T ss_dssp CTTSHBSHHHHHHHHHHHHHHHHHHHHT--T-E-----EEEEEEETSB---BGGG--GGGSE--SEEEETTTTTEEEEBH
T ss_pred ccccCcCcHHHHHHHHHHHHHHHhhhcc--CCC-----eeeEeeecccccccccc--CccCccCceEEcCCCCcCeeecc
Confidence 322 11 1123335556656666543 321 334677777773 3333 489999999999 67764
No 14
>PRK13511 6-phospho-beta-galactosidase; Provisional
Probab=77.13 E-value=4.8 Score=42.15 Aligned_cols=75 Identities=17% Similarity=0.270 Sum_probs=45.0
Q ss_pred CCC-ceEEEeeccCCCCCCC--CCCC---CCHHHHHHHHHHHHHHHHhcCCCCCCCCCcccEEEEEeecC-CCCCCCCCC
Q 017202 257 YNG-IEVRVSETGWPSKGDP--NEVG---ATVVNAATYNKNLLRRQMANEGTPLRPNMRLEVYLFALFNE-DMKPGPTSE 329 (375)
Q Consensus 257 ~~~-~~vvItETGWPs~G~~--~~~~---As~~na~~y~~~~i~~~~~~~Gtp~rp~~~i~~y~F~~fDe-~wK~g~~~E 329 (375)
+++ .||+|||.|+...... .+.. --..--+.+++.+.+.+. .|-+ -.-||.-++.|- .|..| .+
T Consensus 365 Y~~~~pi~ITENG~~~~d~~~~~~~~~D~~Ri~yl~~hl~~~~~Ai~--dGv~-----v~GY~~WSl~DnfEW~~G--y~ 435 (469)
T PRK13511 365 YPNYKKIYITENGLGYKDEFVDGKTVDDDKRIDYVKQHLEVISDAIS--DGAN-----VKGYFIWSLMDVFSWSNG--YE 435 (469)
T ss_pred cCCCCCEEEecCCcCCCCCcCCCCccCCHHHHHHHHHHHHHHHHHHH--cCCC-----EEEEeecccccccchhcC--cc
Confidence 445 5899999999754321 0011 123333455555555553 3432 234777888883 45554 89
Q ss_pred CceeeecCCCc
Q 017202 330 RNYGLFQPDGT 340 (375)
Q Consensus 330 ~~wGlf~~d~~ 340 (375)
+.|||++.|.+
T Consensus 436 ~RfGl~~VD~~ 446 (469)
T PRK13511 436 KRYGLFYVDFE 446 (469)
T ss_pred CccceEEECCC
Confidence 99999999865
No 15
>PRK09936 hypothetical protein; Provisional
Probab=76.67 E-value=11 Score=37.17 Aligned_cols=57 Identities=16% Similarity=0.233 Sum_probs=40.0
Q ss_pred ceEEecCCCCC-CCCHHHHHHH---HhcCCCCEEEE-c----cCC--------hHHHHHHhhCCCeEEEEeccc
Q 017202 29 LGVNYGQVANN-LPPPDKVVDL---LSSLKITKSRI-Y----DTN--------PQVLTAFANSNIELIVTVENQ 85 (375)
Q Consensus 29 ~GinYg~~~~n-~ps~~~v~~~---lk~~~~~~VRl-Y----~~d--------~~vL~A~~~~gikV~lGV~n~ 85 (375)
.|+=|-|...+ --++++..++ ++..|++.+=+ | +.| .+.|.++.+.||+|.||++.|
T Consensus 22 ~g~F~Qp~n~d~~~~~~qWq~~~~~~~~~G~~tLivQWt~yG~~~fg~~~g~La~~l~~A~~~Gl~v~vGL~~D 95 (296)
T PRK09936 22 KGIFYQPQNRDSQVTDTQWQGLWSQLRLQGFDTLVVQWTRYGDADFGGQRGWLAKRLAAAQQAGLKLVVGLYAD 95 (296)
T ss_pred ccceeccccccCCCCHHHHHHHHHHHHHcCCcEEEEEeeeccCCCcccchHHHHHHHHHHHHcCCEEEEcccCC
Confidence 46669998766 3466766554 45678865533 2 223 358889999999999999975
No 16
>cd02874 GH18_CFLE_spore_hydrolase Cortical fragment-lytic enzyme (CFLE) is a peptidoglycan hydrolase involved in bacterial endospore germination. CFLE is expressed as an inactive preprotein (called SleB) in the forespore compartment of sporulating cells. SleB translocates across the forespore inner membrane and is deposited as a mature enzyme in the cortex layer of the spore. As part of a sensory mechanism capable of initiating germination, CFLE degrades a spore-specific peptidoglycan constituent called muramic-acid delta-lactam that comprises the outer cortex. CFLE has a C-terminal glycosyl hydrolase family 18 (GH18) catalytic domain as well as two N-terminal LysM peptidoglycan-binding domains. In addition to SleB, this family includes YaaH, YdhD, and YvbX from Bacillus subtilis.
Probab=74.30 E-value=15 Score=35.82 Aligned_cols=82 Identities=10% Similarity=0.146 Sum_probs=47.9
Q ss_pred hHHHHHHhhCCCeEEEEecccc--------ccccC-CHHHHHHHHHhcccccCCCceEEEEEeccccccCCCchhHHhHH
Q 017202 65 PQVLTAFANSNIELIVTVENQM--------LAVLV-DPQQALQWVSTHIKPYFPATKITGIAVGNEVFTDDDTSLIQNLV 135 (375)
Q Consensus 65 ~~vL~A~~~~gikV~lGV~n~~--------l~~la-~~~~A~~wv~~~v~~~~~~~~I~~I~VGNE~l~~~~~~~~~~Lv 135 (375)
+.++.++++.++||++.|.+.. ...+. ++..-++ +.++|..+...-.+.+|-+-=|.+.. +.....+
T Consensus 48 ~~~~~~a~~~~~kv~~~i~~~~~~~~~~~~~~~~l~~~~~r~~-fi~~iv~~l~~~~~DGidiDwE~~~~---~d~~~~~ 123 (313)
T cd02874 48 ERLIEAAKRRGVKPLLVITNLTNGNFDSELAHAVLSNPEARQR-LINNILALAKKYGYDGVNIDFENVPP---EDREAYT 123 (313)
T ss_pred HHHHHHHHHCCCeEEEEEecCCCCCCCHHHHHHHhcCHHHHHH-HHHHHHHHHHHhCCCcEEEecccCCH---HHHHHHH
Confidence 6788888889999999987643 11222 4332222 22233222111123455554455432 2346789
Q ss_pred HHHHHHHHHHHhcCC
Q 017202 136 PATVSIHGALVQLGL 150 (375)
Q Consensus 136 ~am~~v~~aL~~~gl 150 (375)
..++++|++|++.|+
T Consensus 124 ~fl~~lr~~l~~~~~ 138 (313)
T cd02874 124 QFLRELSDRLHPAGY 138 (313)
T ss_pred HHHHHHHHHhhhcCc
Confidence 999999999987765
No 17
>PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of beta-galactosidase enzymes (3.2.1.23 from EC) belong to the glycosyl hydrolase 42 family GH42 from CAZY. The enzyme catalyses the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1KWK_A 1KWG_A 3U7V_A.
Probab=73.83 E-value=6.5 Score=39.54 Aligned_cols=81 Identities=16% Similarity=0.176 Sum_probs=49.6
Q ss_pred HHHHHHHhcCCCCEEEEcc-------CC---------hHHHHHHhhCCCeEEEEecccccc--------c----------
Q 017202 44 DKVVDLLSSLKITKSRIYD-------TN---------PQVLTAFANSNIELIVTVENQMLA--------V---------- 89 (375)
Q Consensus 44 ~~v~~~lk~~~~~~VRlY~-------~d---------~~vL~A~~~~gikV~lGV~n~~l~--------~---------- 89 (375)
++.+++|+..|++.|||-. +. -.+|..+++.||+|+|+++....+ .
T Consensus 13 ~~d~~~m~~~G~n~vri~~~~W~~lEP~eG~ydF~~lD~~l~~a~~~Gi~viL~~~~~~~P~Wl~~~~Pe~~~~~~~g~~ 92 (374)
T PF02449_consen 13 EEDLRLMKEAGFNTVRIGEFSWSWLEPEEGQYDFSWLDRVLDLAAKHGIKVILGTPTAAPPAWLYDKYPEILPVDADGRR 92 (374)
T ss_dssp HHHHHHHHHHT-SEEEE-CCEHHHH-SBTTB---HHHHHHHHHHHCTT-EEEEEECTTTS-HHHHCCSGCCC-B-TTTSB
T ss_pred HHHHHHHHHcCCCEEEEEEechhhccCCCCeeecHHHHHHHHHHHhccCeEEEEecccccccchhhhcccccccCCCCCc
Confidence 4456677889999999742 22 248888899999999999632111 0
Q ss_pred ----------cCC---HHHHHHHHHhcccccCCCceEEEEEecccccc
Q 017202 90 ----------LVD---PQQALQWVSTHIKPYFPATKITGIAVGNEVFT 124 (375)
Q Consensus 90 ----------la~---~~~A~~wv~~~v~~~~~~~~I~~I~VGNE~l~ 124 (375)
+.+ .+.+.+.++.-+..|...-.|.++-|+||.-.
T Consensus 93 ~~~g~~~~~~~~~p~yr~~~~~~~~~l~~~y~~~p~vi~~~i~NE~~~ 140 (374)
T PF02449_consen 93 RGFGSRQHYCPNSPAYREYARRFIRALAERYGDHPAVIGWQIDNEPGY 140 (374)
T ss_dssp EECCCSTT-HCCHHHHHHHHHHHHHHHHHHHTTTTTEEEEEECCSTTC
T ss_pred CccCCccccchhHHHHHHHHHHHHHHHHhhccccceEEEEEeccccCc
Confidence 001 12334444444455544456999999999755
No 18
>KOG0626 consensus Beta-glucosidase, lactase phlorizinhydrolase, and related proteins [Carbohydrate transport and metabolism]
Probab=71.47 E-value=29 Score=36.85 Aligned_cols=82 Identities=11% Similarity=0.208 Sum_probs=56.0
Q ss_pred CCCCceEEEeeccCCCCCCCCC-------CCCCHHHHHHHHHHHHHHHHhcCCCCCCCCCcccEEEEEeec-CCCCCCCC
Q 017202 256 GYNGIEVRVSETGWPSKGDPNE-------VGATVVNAATYNKNLLRRQMANEGTPLRPNMRLEVYLFALFN-EDMKPGPT 327 (375)
Q Consensus 256 g~~~~~vvItETGWPs~G~~~~-------~~As~~na~~y~~~~i~~~~~~~Gtp~rp~~~i~~y~F~~fD-e~wK~g~~ 327 (375)
.++|.+|.|+|-|-+...+... ...-.+..+.|++.+.+.+.. .|- .-.-||..++-| -.|..|
T Consensus 404 ~Y~np~iyItENG~~d~~~~~~~~~~~l~D~~Ri~Y~~~~L~~~~kAi~~-dgv-----nv~GYf~WSLmDnfEw~~G-- 475 (524)
T KOG0626|consen 404 KYGNPPIYITENGFDDLDGGTKSLEVALKDTKRIEYLQNHLQAVLKAIKE-DGV-----NVKGYFVWSLLDNFEWLDG-- 475 (524)
T ss_pred hcCCCcEEEEeCCCCcccccccchhhhhcchHHHHHHHHHHHHHHHHHHh-cCC-----ceeeEEEeEcccchhhhcC--
Confidence 4789999999999998755321 124466677778877777763 221 133588888887 456665
Q ss_pred CCCceeeecC------CCceeEee
Q 017202 328 SERNYGLFQP------DGTMAYNV 345 (375)
Q Consensus 328 ~E~~wGlf~~------d~~~ky~l 345 (375)
..-.||||+. .|.||-+.
T Consensus 476 y~~RFGlyyVDf~d~l~R~pK~Sa 499 (524)
T KOG0626|consen 476 YKVRFGLYYVDFKDPLKRYPKLSA 499 (524)
T ss_pred cccccccEEEeCCCCCcCCchhHH
Confidence 7899999995 45566443
No 19
>COG4782 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=70.60 E-value=15 Score=37.39 Aligned_cols=60 Identities=22% Similarity=0.304 Sum_probs=38.8
Q ss_pred cchHHHHHHHHHHHHHHHcCCCCceEEEeeccCCCCCCCCC---CCCCHHHHHHHHHHHHHHHHhc
Q 017202 237 YDNMLYAQVDAAIFAMARLGYNGIEVRVSETGWPSKGDPNE---VGATVVNAATYNKNLLRRQMAN 299 (375)
Q Consensus 237 y~n~fda~~dav~~al~~~g~~~~~vvItETGWPs~G~~~~---~~As~~na~~y~~~~i~~~~~~ 299 (375)
|.|-|++-+--...-+.-.|.+..+|+.+ |||.|.-.+ ...|-..++.-+.++++.+...
T Consensus 125 fNntf~dav~R~aqI~~d~g~~~~pVvFS---WPS~g~l~~Yn~DreS~~~Sr~aLe~~lr~La~~ 187 (377)
T COG4782 125 FNNTFEDAVYRTAQIVHDSGNDGVPVVFS---WPSRGSLLGYNYDRESTNYSRPALERLLRYLATD 187 (377)
T ss_pred cCCchhHHHHHHHHHHhhcCCCcceEEEE---cCCCCeeeecccchhhhhhhHHHHHHHHHHHHhC
Confidence 55555544433323333456778888886 999998532 3467777777788888887753
No 20
>cd00598 GH18_chitinase-like The GH18 (glycosyl hydrolase, family 18) type II chitinases hydrolyze chitin, an abundant polymer of beta-1,4-linked N-acetylglucosamine (GlcNAc) which is a major component of the cell wall of fungi and the exoskeleton of arthropods. Chitinases have been identified in viruses, bacteria, fungi, protozoan parasites, insects, and plants. The structure of the GH18 domain is an eight-stranded beta/alpha barrel with a pronounced active-site cleft at the C-terminal end of the beta-barrel. The GH18 family includes chitotriosidase, chitobiase, hevamine, zymocin-alpha, narbonin, SI-CLP (stabilin-1 interacting chitinase-like protein), IDGF (imaginal disc growth factor), CFLE (cortical fragment-lytic enzyme) spore hydrolase, the type III and type V plant chitinases, the endo-beta-N-acetylglucosaminidases, and the chitolectins. The GH85 (glycosyl hydrolase, family 85) ENGases (endo-beta-N-acetylglucosaminidases) are closely related to the GH18 chitinases and are inclu
Probab=70.21 E-value=13 Score=33.61 Aligned_cols=80 Identities=18% Similarity=0.301 Sum_probs=43.6
Q ss_pred HHHHHhhC--CCeEEEEeccccccc---cC-CHHHHHHH---HHhcccccCCCceEEEEEeccccccCCCchhHHhHHHH
Q 017202 67 VLTAFANS--NIELIVTVENQMLAV---LV-DPQQALQW---VSTHIKPYFPATKITGIAVGNEVFTDDDTSLIQNLVPA 137 (375)
Q Consensus 67 vL~A~~~~--gikV~lGV~n~~l~~---la-~~~~A~~w---v~~~v~~~~~~~~I~~I~VGNE~l~~~~~~~~~~Lv~a 137 (375)
-++.+++. |+||++.|....... ++ ++...++. +.+-+..| .+.+|-+==|.....+......++..
T Consensus 54 ~i~~l~~~~~g~kv~~sigg~~~~~~~~~~~~~~~~~~f~~~~~~~v~~~----~~DGidiD~E~~~~~~~~~~~~~~~l 129 (210)
T cd00598 54 ALEELASKKPGLKVLISIGGWTDSSPFTLASDPASRAAFANSLVSFLKTY----GFDGVDIDWEYPGAADNSDRENFITL 129 (210)
T ss_pred HHHHHHHhCCCCEEEEEEcCCCCCCCchhhcCHHHHHHHHHHHHHHHHHc----CCCceEEeeeCCCCcCccHHHHHHHH
Confidence 45555654 999999998643322 23 44333222 22233344 23344443344322110124679999
Q ss_pred HHHHHHHHHhcCC
Q 017202 138 TVSIHGALVQLGL 150 (375)
Q Consensus 138 m~~v~~aL~~~gl 150 (375)
|+++|+.|...++
T Consensus 130 l~~lr~~l~~~~~ 142 (210)
T cd00598 130 LRELRSALGAANY 142 (210)
T ss_pred HHHHHHHhcccCc
Confidence 9999999987654
No 21
>smart00481 POLIIIAc DNA polymerase alpha chain like domain. DNA polymerase alpha chain like domain, incl. family of hypothetical proteins
Probab=69.91 E-value=16 Score=27.11 Aligned_cols=44 Identities=20% Similarity=0.291 Sum_probs=36.0
Q ss_pred CCHHHHHHHHhcCCCCEEEEccCC-----hHHHHHHhhCCCeEEEEecc
Q 017202 41 PPPDKVVDLLSSLKITKSRIYDTN-----PQVLTAFANSNIELIVTVEN 84 (375)
Q Consensus 41 ps~~~v~~~lk~~~~~~VRlY~~d-----~~vL~A~~~~gikV~lGV~n 84 (375)
-+++++++..+++|++.|=+-|-+ +...+.+++.|++++.|+..
T Consensus 15 ~~~~~~~~~a~~~g~~~v~iTDh~~~~~~~~~~~~~~~~gi~~i~G~E~ 63 (67)
T smart00481 15 LSPEELVKRAKELGLKAIAITDHGNLFGAVEFYKAAKKAGIKPIIGLEA 63 (67)
T ss_pred CCHHHHHHHHHHcCCCEEEEeeCCcccCHHHHHHHHHHcCCeEEEEEEE
Confidence 467889999999999999888776 45667777899999999864
No 22
>cd06545 GH18_3CO4_chitinase The Bacteroides thetaiotaomicron protein represented by pdb structure 3CO4 is an uncharacterized bacterial member of the family 18 glycosyl hydrolases with homologs found in Flavobacterium, Stigmatella, and Pseudomonas.
Probab=67.75 E-value=55 Score=30.90 Aligned_cols=77 Identities=18% Similarity=0.254 Sum_probs=43.4
Q ss_pred HHHHHHhhCCCeEEEEecccccc---ccC-CHHHHHHHHHh---cccccCCCceEEEEEeccccccCCCchhHHhHHHHH
Q 017202 66 QVLTAFANSNIELIVTVENQMLA---VLV-DPQQALQWVST---HIKPYFPATKITGIAVGNEVFTDDDTSLIQNLVPAT 138 (375)
Q Consensus 66 ~vL~A~~~~gikV~lGV~n~~l~---~la-~~~~A~~wv~~---~v~~~~~~~~I~~I~VGNE~l~~~~~~~~~~Lv~am 138 (375)
..+++++..|+||++.|.+.... .+. ++...+.+++. .+..| .+.+|-+==|-.... ....+..+
T Consensus 50 ~~~~~~~~~~~kvl~sigg~~~~~~~~~~~~~~~r~~fi~~lv~~~~~~----~~DGIdiDwE~~~~~----~~~~~~fv 121 (253)
T cd06545 50 SVVNAAHAHNVKILISLAGGSPPEFTAALNDPAKRKALVDKIINYVVSY----NLDGIDVDLEGPDVT----FGDYLVFI 121 (253)
T ss_pred HHHHHHHhCCCEEEEEEcCCCCCcchhhhcCHHHHHHHHHHHHHHHHHh----CCCceeEEeeccCcc----HhHHHHHH
Confidence 35667777899999988764322 122 44333333222 23333 233444433543211 34677889
Q ss_pred HHHHHHHHhcCC
Q 017202 139 VSIHGALVQLGL 150 (375)
Q Consensus 139 ~~v~~aL~~~gl 150 (375)
+++|++|++.|+
T Consensus 122 ~~Lr~~l~~~~~ 133 (253)
T cd06545 122 RALYAALKKEGK 133 (253)
T ss_pred HHHHHHHhhcCc
Confidence 999999987664
No 23
>TIGR03356 BGL beta-galactosidase.
Probab=62.13 E-value=17 Score=37.54 Aligned_cols=75 Identities=17% Similarity=0.294 Sum_probs=43.7
Q ss_pred CCCceEEEeeccCCCCCCC-CCC---CCCHHHHHHHHHHHHHHHHhcCCCCCCCCCcccEEEEEeecC-CCCCCCCCCCc
Q 017202 257 YNGIEVRVSETGWPSKGDP-NEV---GATVVNAATYNKNLLRRQMANEGTPLRPNMRLEVYLFALFNE-DMKPGPTSERN 331 (375)
Q Consensus 257 ~~~~~vvItETGWPs~G~~-~~~---~As~~na~~y~~~~i~~~~~~~Gtp~rp~~~i~~y~F~~fDe-~wK~g~~~E~~ 331 (375)
+++.||+|||.|+...... .+. .--..--+.+++.+.+.+. .|-+ -.-||..++.|- .|..| ..+.
T Consensus 335 Y~~ppi~ITENG~~~~d~~~~g~~~D~~Ri~yl~~hl~~~~~Ai~--dGv~-----v~GY~~Wsl~Dn~ew~~g--y~~r 405 (427)
T TIGR03356 335 YPGPPIYITENGAAFDDEVTDGEVHDPERIAYLRDHLAALARAIE--EGVD-----VRGYFVWSLLDNFEWAEG--YSKR 405 (427)
T ss_pred cCCCCEEEeCCCCCcCCCCcCCCcCCHHHHHHHHHHHHHHHHHHH--CCCC-----EEEEEecccccccchhcc--cccc
Confidence 4456899999999754321 100 0112233444454444443 3432 234677777773 45444 8999
Q ss_pred eeeecCCCc
Q 017202 332 YGLFQPDGT 340 (375)
Q Consensus 332 wGlf~~d~~ 340 (375)
|||++.|++
T Consensus 406 fGl~~VD~~ 414 (427)
T TIGR03356 406 FGLVHVDYE 414 (427)
T ss_pred cceEEECCC
Confidence 999999865
No 24
>PRK09525 lacZ beta-D-galactosidase; Reviewed
Probab=57.77 E-value=95 Score=35.94 Aligned_cols=97 Identities=14% Similarity=0.134 Sum_probs=58.5
Q ss_pred cceEEecCCCC---CCCCHHHH---HHHHhcCCCCEEEEcc--CChHHHHHHhhCCCeEEEEecccc-----ccccC-CH
Q 017202 28 CLGVNYGQVAN---NLPPPDKV---VDLLSSLKITKSRIYD--TNPQVLTAFANSNIELIVTVENQM-----LAVLV-DP 93 (375)
Q Consensus 28 ~~GinYg~~~~---n~ps~~~v---~~~lk~~~~~~VRlY~--~d~~vL~A~~~~gikV~lGV~n~~-----l~~la-~~ 93 (375)
..|+|+-.... ...+++++ ++++|..|++.||+-. .++..+..|...||=|+--++... ...+. ++
T Consensus 352 lrGvn~h~~~p~~G~a~t~e~~~~di~lmK~~g~NaVR~sHyP~~p~fydlcDe~GilV~dE~~~e~hg~~~~~~~~~dp 431 (1027)
T PRK09525 352 IRGVNRHEHHPEHGQVMDEETMVQDILLMKQHNFNAVRCSHYPNHPLWYELCDRYGLYVVDEANIETHGMVPMNRLSDDP 431 (1027)
T ss_pred EEEeEccccCcccCccCCHHHHHHHHHHHHHCCCCEEEecCCCCCHHHHHHHHHcCCEEEEecCccccCCccccCCCCCH
Confidence 36788753211 23466655 4577899999999954 357899999999998886654311 01112 22
Q ss_pred ---HHHHHHHHhcccccCCCceEEEEEecccccc
Q 017202 94 ---QQALQWVSTHIKPYFPATKITGIAVGNEVFT 124 (375)
Q Consensus 94 ---~~A~~wv~~~v~~~~~~~~I~~I~VGNE~l~ 124 (375)
+...+-+++.|..+.-.-.|..=++|||.-.
T Consensus 432 ~~~~~~~~~~~~mV~RdrNHPSIi~WSlgNE~~~ 465 (1027)
T PRK09525 432 RWLPAMSERVTRMVQRDRNHPSIIIWSLGNESGH 465 (1027)
T ss_pred HHHHHHHHHHHHHHHhCCCCCEEEEEeCccCCCc
Confidence 1222224444554433345888999999743
No 25
>PLN00196 alpha-amylase; Provisional
Probab=56.33 E-value=45 Score=34.57 Aligned_cols=81 Identities=25% Similarity=0.344 Sum_probs=47.5
Q ss_pred CcchhhhHHHHHHHHHHhhhhcccc--cccceEEecCCCCCCCCHHHH---HHHHhcCCCCEE-----------------
Q 017202 1 MATFCRNIALIPFFLLLSLTFSDFG--VTCLGVNYGQVANNLPPPDKV---VDLLSSLKITKS----------------- 58 (375)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~GinYg~~~~n~ps~~~v---~~~lk~~~~~~V----------------- 58 (375)
||++- ..|++++++++++..++. .-.-|+++.....+.-.-..+ +.-|+..||+.|
T Consensus 1 ~~~~~--~~~~~~~~~~~~~~~~~~~~v~~Q~F~W~~~~~~gg~~~~i~~kldyL~~LGvtaIWL~P~~~s~s~hGY~~~ 78 (428)
T PLN00196 1 MANRR--LSMILLLVLLGLSSNLAAGQVLFQGFNWESWKQNGGWYNFLMGKVDDIAAAGITHVWLPPPSHSVSEQGYMPG 78 (428)
T ss_pred CCCcc--hHHHHHHHHhccCcccCCCCEEEEeeccCCCCCCCcCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCcc
Confidence 45553 344556666677766543 234688875432221122333 345577777776
Q ss_pred EEccCC----------hHHHHHHhhCCCeEEEEec
Q 017202 59 RIYDTN----------PQVLTAFANSNIELIVTVE 83 (375)
Q Consensus 59 RlY~~d----------~~vL~A~~~~gikV~lGV~ 83 (375)
+.|+.| .+.++++.+.||+|++-+=
T Consensus 79 D~y~ld~~~fGt~~elk~Lv~~aH~~GIkVilDvV 113 (428)
T PLN00196 79 RLYDLDASKYGNEAQLKSLIEAFHGKGVQVIADIV 113 (428)
T ss_pred ccCCCCcccCCCHHHHHHHHHHHHHCCCEEEEEEC
Confidence 445444 1367888889999999754
No 26
>PF13721 SecD-TM1: SecD export protein N-terminal TM region
Probab=55.52 E-value=96 Score=25.53 Aligned_cols=46 Identities=17% Similarity=0.097 Sum_probs=32.9
Q ss_pred HHHhhhhcccccccceEEecCCCCCCCCHHHHHHHHhcCCCCEEEE
Q 017202 15 LLLSLTFSDFGVTCLGVNYGQVANNLPPPDKVVDLLSSLKITKSRI 60 (375)
Q Consensus 15 ~~~~~~~~~~~~~~~GinYg~~~~n~ps~~~v~~~lk~~~~~~VRl 60 (375)
+|-||+........+-|.-...+...++.++|.+.|+..||..-++
T Consensus 20 ~lyALPnlyge~pAvqIs~~~~~~~~~~~~~v~~~L~~~~I~~k~i 65 (101)
T PF13721_consen 20 ALYALPNLYGEDPAVQISASSAGVQLPDAFQVEQALKAAGIAVKSI 65 (101)
T ss_pred HHHHhhhccCCCCcEEEecCCCCccCChHHHHHHHHHHCCCCcceE
Confidence 3344444556677788888776667888889999999988855444
No 27
>PLN02998 beta-glucosidase
Probab=53.84 E-value=24 Score=37.33 Aligned_cols=75 Identities=21% Similarity=0.273 Sum_probs=45.6
Q ss_pred CCCceEEEeeccCCCCCCC-CCCCCCHHHHHHHHHHHHHHHHhcCCCCCCCCCcccEEEEEeec-CCCCCCCCCCCceee
Q 017202 257 YNGIEVRVSETGWPSKGDP-NEVGATVVNAATYNKNLLRRQMANEGTPLRPNMRLEVYLFALFN-EDMKPGPTSERNYGL 334 (375)
Q Consensus 257 ~~~~~vvItETGWPs~G~~-~~~~As~~na~~y~~~~i~~~~~~~Gtp~rp~~~i~~y~F~~fD-e~wK~g~~~E~~wGl 334 (375)
+++.+|+|||-|+....+. -...--.+--+.+++.+.+.+. .|-+ -.-||.-++.| =.|..| .++.|||
T Consensus 390 Y~~ppI~ITENG~~~~~~g~v~D~~Ri~Yl~~hl~~~~kAi~--dGv~-----V~GY~~WSl~DnfEW~~G--y~~RfGL 460 (497)
T PLN02998 390 YGNPPVYILENGQMTPHSSSLVDTTRVKYLSSYIKAVLHSLR--KGSD-----VKGYFQWSLMDVFELFGG--YERSFGL 460 (497)
T ss_pred cCCCCEEEeCCCCccCCCCcccCHHHHHHHHHHHHHHHHHHH--cCCC-----EEEEeeccchhhhchhcc--ccCccce
Confidence 4455899999999875310 0011223444556666666654 3322 23477777777 245554 8999999
Q ss_pred ecCCCc
Q 017202 335 FQPDGT 340 (375)
Q Consensus 335 f~~d~~ 340 (375)
++.|.+
T Consensus 461 v~VD~~ 466 (497)
T PLN02998 461 LYVDFK 466 (497)
T ss_pred EEECCC
Confidence 999854
No 28
>PF05990 DUF900: Alpha/beta hydrolase of unknown function (DUF900); InterPro: IPR010297 This domain is associated with proteins of unknown function, which are hydrolase-like.
Probab=52.73 E-value=53 Score=30.90 Aligned_cols=42 Identities=21% Similarity=0.364 Sum_probs=26.3
Q ss_pred HcCCCCceEEEeeccCCCCCCCCC---CCCCHHHHHHHHHHHHHHHHh
Q 017202 254 RLGYNGIEVRVSETGWPSKGDPNE---VGATVVNAATYNKNLLRRQMA 298 (375)
Q Consensus 254 ~~g~~~~~vvItETGWPs~G~~~~---~~As~~na~~y~~~~i~~~~~ 298 (375)
.+++++..|+. .|||.|...+ ...+.......+..+++.+..
T Consensus 44 ~~~~~~~~i~F---sWPS~g~~~~Y~~d~~~a~~s~~~l~~~L~~L~~ 88 (233)
T PF05990_consen 44 DLGFPGVVILF---SWPSDGSLLGYFYDRESARFSGPALARFLRDLAR 88 (233)
T ss_pred HhCCCceEEEE---EcCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHh
Confidence 45677755555 6999998532 234555556666667766653
No 29
>PLN02814 beta-glucosidase
Probab=52.52 E-value=39 Score=35.86 Aligned_cols=75 Identities=17% Similarity=0.327 Sum_probs=45.1
Q ss_pred CCCceEEEeeccCCCCCCC-CCCCCCHHHHHHHHHHHHHHHHhcCCCCCCCCCcccEEEEEeec-CCCCCCCCCCCceee
Q 017202 257 YNGIEVRVSETGWPSKGDP-NEVGATVVNAATYNKNLLRRQMANEGTPLRPNMRLEVYLFALFN-EDMKPGPTSERNYGL 334 (375)
Q Consensus 257 ~~~~~vvItETGWPs~G~~-~~~~As~~na~~y~~~~i~~~~~~~Gtp~rp~~~i~~y~F~~fD-e~wK~g~~~E~~wGl 334 (375)
+++.||+|||-|+....+. -...--.+--+.+++.+.+.+. .|-| -.-||.-++.| =.|..| .++.|||
T Consensus 385 Y~~ppI~ITENG~~~~~~g~i~D~~Ri~Yl~~hl~~l~~Ai~--dGv~-----V~GY~~WSllDnfEW~~G--y~~RfGL 455 (504)
T PLN02814 385 YNNPPIYILENGMPMKHDSTLQDTPRVEFIQAYIGAVLNAIK--NGSD-----TRGYFVWSMIDLYELLGG--YTTSFGM 455 (504)
T ss_pred cCCCCEEEECCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHH--cCCC-----EEEEeeccchhhhchhcc--ccCccce
Confidence 4556899999999754320 0011223344555555555554 3432 23477777777 245554 8999999
Q ss_pred ecCCCc
Q 017202 335 FQPDGT 340 (375)
Q Consensus 335 f~~d~~ 340 (375)
++.|..
T Consensus 456 vyVD~~ 461 (504)
T PLN02814 456 YYVNFS 461 (504)
T ss_pred EEECCC
Confidence 999754
No 30
>PF04909 Amidohydro_2: Amidohydrolase; InterPro: IPR006992 These proteins are related to the metal-dependent hydrolase superfamily []. The family includes 2-amino-3-carboxymuconate-6-semialdehyde decarboxylase which converts alpha-amino-beta-carboxymuconate-epsilon- semialdehyde (ACMS) to alpha-aminomuconate semialdehyde (AMS). ACMS can be converted non-enzymatically to quinolate, a potent endogenous excitoxin of neuronal cells which is implicated in the pathogenesis of various neurodegenerative disorders. In the presence of AMCSD, ACMS is converted to AMS, a benign catabolite. 2-amino-3-(3-oxoprop-2-enyl)-but-2-enedioate = 2-aminomuconate semialdehyde + CO2. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2QPX_A 4D8L_A 3K4W_I 3IRS_B 4DZI_B 3S4T_G 2GWG_B 3IJ6_A 2DVX_C 2DVT_C ....
Probab=52.38 E-value=40 Score=31.07 Aligned_cols=52 Identities=15% Similarity=0.191 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHhcCCCCceeEecccccccccccCCCCCCccchhhHHHH-HHHHHHhhhCCCCeeeec
Q 017202 136 PATVSIHGALVQLGLDKYIQVSTPNSLAVLEESYPPSAGSFKTEVAGIM-SQYLQFLSSTKAPFWINA 202 (375)
Q Consensus 136 ~am~~v~~aL~~~gl~~~IkVsT~~~~~v~~~~~pPS~g~F~~~~~~~l-~~~~dfL~~~~sp~~vNi 202 (375)
.+++.+.+.+...|+.| |++.+..... ++ . .+.+ .++.+.+.+.+-|+.+|+
T Consensus 85 ~~~~~l~~~~~~~g~~G-v~l~~~~~~~-----~~-~--------~~~~~~~~~~~~~~~~~pv~~H~ 137 (273)
T PF04909_consen 85 DAVEELERALQELGFRG-VKLHPDLGGF-----DP-D--------DPRLDDPIFEAAEELGLPVLIHT 137 (273)
T ss_dssp HHHHHHHHHHHTTTESE-EEEESSETTC-----CT-T--------SGHCHHHHHHHHHHHT-EEEEEE
T ss_pred hHHHHHHHhccccceee-eEecCCCCcc-----cc-c--------cHHHHHHHHHHHHhhccceeeec
Confidence 57778888888889876 8877643211 11 1 1122 378889999998888774
No 31
>PF00331 Glyco_hydro_10: Glycosyl hydrolase family 10; InterPro: IPR001000 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 10 GH10 from CAZY comprises enzymes with a number of known activities; xylanase (3.2.1.8 from EC); endo-1,3-beta-xylanase (3.2.1.32 from EC); cellobiohydrolase (3.2.1.91 from EC). These enzymes were formerly known as cellulase family F. The microbial degradation of cellulose and xylans requires several types of enzymes such as endoglucanases (3.2.1.4 from EC), cellobiohydrolases (3.2.1.91 from EC) (exoglucanases), or xylanases (3.2.1.8 from EC) [, ]. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family F [] or as the glycosyl hydrolases family 10 []. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1UQZ_A 1UQY_A 1UR2_A 1UR1_A 2CNC_A 1OD8_A 1E0W_A 1E0V_A 1V0M_A 1E0X_B ....
Probab=51.85 E-value=24 Score=34.93 Aligned_cols=221 Identities=15% Similarity=0.135 Sum_probs=110.9
Q ss_pred HHHHHHhhCCCeEE--EEecccccc----cc-C-C-------HHHHHHHHHhcccccCCC-ceEEEEEeccccccCCC--
Q 017202 66 QVLTAFANSNIELI--VTVENQMLA----VL-V-D-------PQQALQWVSTHIKPYFPA-TKITGIAVGNEVFTDDD-- 127 (375)
Q Consensus 66 ~vL~A~~~~gikV~--lGV~n~~l~----~l-a-~-------~~~A~~wv~~~v~~~~~~-~~I~~I~VGNE~l~~~~-- 127 (375)
.+++-++..||+|- .=||-...+ .. . + .+....+|.+.+..| .+ .+|...=|=||++..+.
T Consensus 63 ~~~~~a~~~g~~vrGH~LvW~~~~P~w~~~~~~~~~~~~~~~~~~l~~~I~~v~~~y-~~~g~i~~WDVvNE~i~~~~~~ 141 (320)
T PF00331_consen 63 AILDWARENGIKVRGHTLVWHSQTPDWVFNLANGSPDEKEELRARLENHIKTVVTRY-KDKGRIYAWDVVNEAIDDDGNP 141 (320)
T ss_dssp HHHHHHHHTT-EEEEEEEEESSSS-HHHHTSTTSSBHHHHHHHHHHHHHHHHHHHHT-TTTTTESEEEEEES-B-TTSSS
T ss_pred HHHHHHHhcCcceeeeeEEEcccccceeeeccCCCcccHHHHHHHHHHHHHHHHhHh-ccccceEEEEEeeecccCCCcc
Confidence 47788888999865 224533222 11 1 1 123345565555555 43 37888888899997642
Q ss_pred ----chh------HHhHHHHHHHHHHHHHhcCCCCceeEecccccccccccCCCCCCccchhhHHHHHHHHHHhhhCCCC
Q 017202 128 ----TSL------IQNLVPATVSIHGALVQLGLDKYIQVSTPNSLAVLEESYPPSAGSFKTEVAGIMSQYLQFLSSTKAP 197 (375)
Q Consensus 128 ----~~~------~~~Lv~am~~v~~aL~~~gl~~~IkVsT~~~~~v~~~~~pPS~g~F~~~~~~~l~~~~dfL~~~~sp 197 (375)
.+. ...+..+.+-.|++...+.| - -+.|. ...+.-...+..++..|.+.|.|
T Consensus 142 ~~~r~~~~~~~lG~~yi~~aF~~A~~~~P~a~L------~--------~NDy~----~~~~~k~~~~~~lv~~l~~~gvp 203 (320)
T PF00331_consen 142 GGLRDSPWYDALGPDYIADAFRAAREADPNAKL------F--------YNDYN----IESPAKRDAYLNLVKDLKARGVP 203 (320)
T ss_dssp SSBCTSHHHHHHTTCHHHHHHHHHHHHHTTSEE------E--------EEESS----TTSTHHHHHHHHHHHHHHHTTHC
T ss_pred ccccCChhhhcccHhHHHHHHHHHHHhCCCcEE------E--------ecccc----ccchHHHHHHHHHHHHHHhCCCc
Confidence 011 13455566667776653322 1 11122 11111124456788888777766
Q ss_pred eeeeccccccccCCCCccCccccccCCCCCcccCCCCcccchHHHHHHHHHHHHHHHcCCCCceEEEeeccCCCCCCCCC
Q 017202 198 FWINAYTYFAYKDAPNRISLDYALFNPNSGMVDPYTKLHYDNMLYAQVDAAIFAMARLGYNGIEVRVSETGWPSKGDPNE 277 (375)
Q Consensus 198 ~~vNiyPyf~~~~~~~~i~l~~a~f~~~~~~~d~~~~~~y~n~fda~~dav~~al~~~g~~~~~vvItETGWPs~G~~~~ 277 (375)
|- + |. || +++.... . .+.+..+|++...-+++|.|||--=........
T Consensus 204 Id--------g------IG-----~Q---~H~~~~~----~------~~~i~~~l~~~~~~Gl~i~ITElDv~~~~~~~~ 251 (320)
T PF00331_consen 204 ID--------G------IG-----LQ---SHFDAGY----P------PEQIWNALDRFASLGLPIHITELDVRDDDNPPD 251 (320)
T ss_dssp S---------E------EE-----EE---EEEETTS----S------HHHHHHHHHHHHTTTSEEEEEEEEEESSSTTSC
T ss_pred cc--------e------ec-----hh---hccCCCC----C------HHHHHHHHHHHHHcCCceEEEeeeecCCCCCcc
Confidence 31 1 11 11 1111111 0 333444555555557999999985444333110
Q ss_pred CCCCHHHHHHHHHHHHHHHHhcCCCCCCCCCcccEEEEEeecCC-CCCCCCCCCceeeecCCCceeEe
Q 017202 278 VGATVVNAATYNKNLLRRQMANEGTPLRPNMRLEVYLFALFNED-MKPGPTSERNYGLFQPDGTMAYN 344 (375)
Q Consensus 278 ~~As~~na~~y~~~~i~~~~~~~Gtp~rp~~~i~~y~F~~fDe~-wK~g~~~E~~wGlf~~d~~~ky~ 344 (375)
....+.|+.+++++++.+.+.. |..-..+.+....|.. |.++.. -.+=+||+.|.+||..
T Consensus 252 -~~~~~~qA~~~~~~~~~~~~~~-----~~~v~git~Wg~~D~~sW~~~~~-~~~~~lfd~~~~~Kpa 312 (320)
T PF00331_consen 252 -AEEEEAQAEYYRDFLTACFSHP-----PAAVEGITWWGFTDGYSWRPDTP-PDRPLLFDEDYQPKPA 312 (320)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHTT-----HCTEEEEEESSSBTTGSTTGGHS-EG--SSB-TTSBB-HH
T ss_pred -hHHHHHHHHHHHHHHHHHHhCC-----ccCCCEEEEECCCCCCcccCCCC-CCCCeeECCCcCCCHH
Confidence 2457788999999999888621 0111223344455533 664311 1223799999999853
No 32
>PF00925 GTP_cyclohydro2: GTP cyclohydrolase II; InterPro: IPR000926 GTP cyclohydrolase II catalyses the first committed step in the biosynthesis of riboflavin. The enzyme converts GTP and water to formate, 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)- pyrimidine and pyrophosphate, and requires magnesium as a cofactor. It is sometimes found as a bifunctional enzyme with 3,4-dihydroxy-2-butanone 4-phosphate synthase (DHBP_synthase) IPR000422 from INTERPRO. ; GO: 0003935 GTP cyclohydrolase II activity, 0009231 riboflavin biosynthetic process; PDB: 2BZ0_B 2BZ1_A.
Probab=49.84 E-value=21 Score=32.05 Aligned_cols=37 Identities=24% Similarity=0.449 Sum_probs=26.5
Q ss_pred HHHHhcCCCCEEEEccCChHHHHHHhhCCCeEEEEec
Q 017202 47 VDLLSSLKITKSRIYDTNPQVLTAFANSNIELIVTVE 83 (375)
Q Consensus 47 ~~~lk~~~~~~VRlY~~d~~vL~A~~~~gikV~lGV~ 83 (375)
+++|+..|+++||+.+.+|.-+.++.+.||+|.=-|+
T Consensus 132 aqIL~dLGV~~~rLLtnnp~k~~~L~g~gleV~~~vp 168 (169)
T PF00925_consen 132 AQILRDLGVKKMRLLTNNPRKYVALEGFGLEVVERVP 168 (169)
T ss_dssp HHHHHHTT--SEEEE-S-HHHHHHHHHTT--EEEEE-
T ss_pred HHHHHHcCCCEEEECCCChhHHHHHhcCCCEEEEEec
Confidence 5788999999999999999999999999999875443
No 33
>PRK09589 celA 6-phospho-beta-glucosidase; Reviewed
Probab=48.25 E-value=40 Score=35.46 Aligned_cols=75 Identities=11% Similarity=0.197 Sum_probs=43.7
Q ss_pred CceEEEeeccCCCCCCCC--CC---CCCHHHHHHHHHHHHHHHHhcCCCCCCCCCcccEEEEEeecC-CCCCCCCCCCce
Q 017202 259 GIEVRVSETGWPSKGDPN--EV---GATVVNAATYNKNLLRRQMANEGTPLRPNMRLEVYLFALFNE-DMKPGPTSERNY 332 (375)
Q Consensus 259 ~~~vvItETGWPs~G~~~--~~---~As~~na~~y~~~~i~~~~~~~Gtp~rp~~~i~~y~F~~fDe-~wK~g~~~E~~w 332 (375)
++||+|||-|........ +. .--..--+.+++.+.+.+.+ .|-+ -.-||.-++.|- .|..| +..+.|
T Consensus 367 ~~Pi~ItENG~~~~d~~~~~g~i~D~~Ri~Yl~~hl~~~~~Ai~~-dGv~-----V~GY~~WSl~Dn~Ew~~G-~y~~Rf 439 (476)
T PRK09589 367 QLPLFIVENGFGAIDQREADGTVNDHYRIDYLAAHIREMKKAVVE-DGVD-----LMGYTPWGCIDLVSAGTG-EMKKRY 439 (476)
T ss_pred CCCEEEEeCCcccCCCCCcCCcccCHHHHHHHHHHHHHHHHHHHh-cCCC-----eEEEeeccccccccccCC-ccccce
Confidence 358999999998643211 11 11233345555555555511 3432 234777788873 34443 278999
Q ss_pred eeecCCCc
Q 017202 333 GLFQPDGT 340 (375)
Q Consensus 333 Glf~~d~~ 340 (375)
||++.|.+
T Consensus 440 Glv~VD~~ 447 (476)
T PRK09589 440 GFIYVDKD 447 (476)
T ss_pred eeEEEcCC
Confidence 99998765
No 34
>PLN02849 beta-glucosidase
Probab=48.13 E-value=36 Score=36.06 Aligned_cols=75 Identities=19% Similarity=0.321 Sum_probs=45.3
Q ss_pred CCCceEEEeeccCCCCCCCCC---CCCCHHHHHHHHHHHHHHHHhcCCCCCCCCCcccEEEEEeecC-CCCCCCCCCCce
Q 017202 257 YNGIEVRVSETGWPSKGDPNE---VGATVVNAATYNKNLLRRQMANEGTPLRPNMRLEVYLFALFNE-DMKPGPTSERNY 332 (375)
Q Consensus 257 ~~~~~vvItETGWPs~G~~~~---~~As~~na~~y~~~~i~~~~~~~Gtp~rp~~~i~~y~F~~fDe-~wK~g~~~E~~w 332 (375)
+++.||+|||-|++......+ ..--.+--+.+++.+.+.+. .|-+ -.-||..++.|- .|..| .++.|
T Consensus 383 Y~~pPi~ITENG~~~~d~~~~~v~D~~Ri~Yl~~hL~~l~~Ai~--dGv~-----V~GY~~WSl~DnfEW~~G--y~~Rf 453 (503)
T PLN02849 383 YGNPPVYILENGTPMKQDLQLQQKDTPRIEYLHAYIGAVLKAVR--NGSD-----TRGYFVWSFMDLYELLKG--YEFSF 453 (503)
T ss_pred cCCCCEEEeCCCCCccCCCCCcccCHHHHHHHHHHHHHHHHHHH--cCCC-----EEEEeeccchhhhchhcc--ccCcc
Confidence 445589999999986543111 11223344555565555554 3422 234677777773 34444 89999
Q ss_pred eeecCCCc
Q 017202 333 GLFQPDGT 340 (375)
Q Consensus 333 Glf~~d~~ 340 (375)
||++.|..
T Consensus 454 GLi~VD~~ 461 (503)
T PLN02849 454 GLYSVNFS 461 (503)
T ss_pred ceEEECCC
Confidence 99999764
No 35
>cd02876 GH18_SI-CLP Stabilin-1 interacting chitinase-like protein (SI-CLP) is a eukaryotic chitinase-like protein of unknown function that interacts with the endocytic/sorting transmembrane receptor stabilin-1 and is secreted from the lysosome. SI-CLP has a glycosyl hydrolase family 18 (GH18) domain but lacks a chitin-binding domain. The catalytic amino acids of the GH18 domain are not conserved in SI-CLP, similar to the chitolectins YKL-39, YKL-40, and YM1/2. Human SI-CLP is sorted to late endosomes and secretory lysosomes in alternatively activated macrophages.
Probab=45.36 E-value=1.1e+02 Score=29.84 Aligned_cols=61 Identities=15% Similarity=0.237 Sum_probs=34.4
Q ss_pred HHhHHHHHHHHHHHHHhcCCCCceeEecccccccccccCCCCCCccc-hhhHHHHHHHHHHhhhCCCCeeeeccccc
Q 017202 131 IQNLVPATVSIHGALVQLGLDKYIQVSTPNSLAVLEESYPPSAGSFK-TEVAGIMSQYLQFLSSTKAPFWINAYTYF 206 (375)
Q Consensus 131 ~~~Lv~am~~v~~aL~~~gl~~~IkVsT~~~~~v~~~~~pPS~g~F~-~~~~~~l~~~~dfL~~~~sp~~vNiyPyf 206 (375)
...++..|+++|++|.+.|+ .+-++.+-.... .+....|. -++ +.|.+.+|| +.+-.|=|.
T Consensus 129 ~~~~~~~l~el~~~l~~~~~--~l~~~v~~~~~~-----~~~~~~~~~~d~-~~l~~~vD~-------v~lMtYD~~ 190 (318)
T cd02876 129 RKELIQLVIHLGETLHSANL--KLILVIPPPREK-----GNQNGLFTRKDF-EKLAPHVDG-------FSLMTYDYS 190 (318)
T ss_pred HHHHHHHHHHHHHHHhhcCC--EEEEEEcCcccc-----ccccccccccCH-HHHHhhccE-------EEEEeeccC
Confidence 46788999999999988775 244443321110 00011121 122 567888999 555566544
No 36
>TIGR03581 EF_0839 conserved hypothetical protein EF_0839/AHA_3917. Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.
Probab=45.03 E-value=41 Score=31.88 Aligned_cols=60 Identities=12% Similarity=0.174 Sum_probs=45.4
Q ss_pred hhhhcccccccceEEecCCCCCCC----CHHHHHHHHhcCCCCEEEEccCC--------hHHHHHHhhCCCe
Q 017202 18 SLTFSDFGVTCLGVNYGQVANNLP----PPDKVVDLLSSLKITKSRIYDTN--------PQVLTAFANSNIE 77 (375)
Q Consensus 18 ~~~~~~~~~~~~GinYg~~~~n~p----s~~~v~~~lk~~~~~~VRlY~~d--------~~vL~A~~~~gik 77 (375)
+|.|.....+.+=|+-||..+..+ +-+.-+.+|+.+|.+.|+.|-.. ..|-+|+++.|+.
T Consensus 108 ~LvsPTG~~G~VkISTGp~Ss~~~~~iV~vetAiaml~dmG~~SiKffPM~Gl~~leE~~avA~aca~~g~~ 179 (236)
T TIGR03581 108 GLVSPTGTPGLVNISTGPLSSQGKEAIVPIETAIAMLKDMGGSSVKFFPMGGLKHLEEYAAVAKACAKHGFY 179 (236)
T ss_pred EeecCCCccceEEeccCcccccCCCceeeHHHHHHHHHHcCCCeeeEeecCCcccHHHHHHHHHHHHHcCCc
Confidence 566777777777788888765544 34556789999999999999765 2477888889875
No 37
>COG4213 XylF ABC-type xylose transport system, periplasmic component [Carbohydrate transport and metabolism]
Probab=45.01 E-value=40 Score=33.70 Aligned_cols=77 Identities=19% Similarity=0.181 Sum_probs=51.9
Q ss_pred hHHHHHHhhCCCeEEEEeccccccccCCHHHHHHHHHhcccccCCCceEEEEEeccccccCCCchhHHhHHHHHHHHHHH
Q 017202 65 PQVLTAFANSNIELIVTVENQMLAVLVDPQQALQWVSTHIKPYFPATKITGIAVGNEVFTDDDTSLIQNLVPATVSIHGA 144 (375)
Q Consensus 65 ~~vL~A~~~~gikV~lGV~n~~l~~la~~~~A~~wv~~~v~~~~~~~~I~~I~VGNE~l~~~~~~~~~~Lv~am~~v~~a 144 (375)
..||+++..+|-.+.+|=.- .+.+ ++..|.+|+...+..++ ..|.+|+--|.-..++ +-++
T Consensus 175 m~VLkp~idsGkik~~Ge~~--~d~W-~ps~Aq~~men~lta~~--~~vdaVvA~nDgtagG--------------aI~a 235 (341)
T COG4213 175 MKVLKPLIDSGKIKVVGEQW--TDGW-LPSNAQQIMENLLTANY--NDIDAVVAPNDGTAGG--------------AIAA 235 (341)
T ss_pred HHHHHHHhhCCceEEeeecc--cccc-CHHHHHHHHHHHHhccc--CceeEEEcCCCchhHH--------------HHHH
Confidence 35999888887444466332 2233 68899999998888876 3488888776643322 1246
Q ss_pred HHhcCCCCceeEeccc
Q 017202 145 LVQLGLDKYIQVSTPN 160 (375)
Q Consensus 145 L~~~gl~~~IkVsT~~ 160 (375)
|++.||.++++||--+
T Consensus 236 L~a~Gl~g~vpVsGQD 251 (341)
T COG4213 236 LKAQGLAGKVPVSGQD 251 (341)
T ss_pred HHhcccCCCCcccCcc
Confidence 8889999889887543
No 38
>TIGR00505 ribA GTP cyclohydrolase II. Several members of the family are bifunctional, involving both ribA and ribB function. In these cases, ribA tends to be on the C-terminal end of the protein and ribB tends to be on the N-terminal. The function of archaeal members of the family has not been demonstrated and is assigned tentatively.
Probab=43.21 E-value=38 Score=31.09 Aligned_cols=33 Identities=24% Similarity=0.570 Sum_probs=29.8
Q ss_pred HHHHhcCCCCEEEEccCChHHHHHHhhCCCeEE
Q 017202 47 VDLLSSLKITKSRIYDTNPQVLTAFANSNIELI 79 (375)
Q Consensus 47 ~~~lk~~~~~~VRlY~~d~~vL~A~~~~gikV~ 79 (375)
.++|+..|+++||+.+.++.-+.++.+.||+|.
T Consensus 131 AQIL~dLGV~~~rLLtn~~~k~~~L~g~gleVv 163 (191)
T TIGR00505 131 ADILEDLGVKKVRLLTNNPKKIEILKKAGINIV 163 (191)
T ss_pred HHHHHHcCCCEEEECCCCHHHHHHHHhCCCEEE
Confidence 578899999999999998888889999999987
No 39
>PRK00393 ribA GTP cyclohydrolase II; Reviewed
Probab=42.85 E-value=38 Score=31.28 Aligned_cols=33 Identities=27% Similarity=0.609 Sum_probs=30.1
Q ss_pred HHHHhcCCCCEEEEccCChHHHHHHhhCCCeEE
Q 017202 47 VDLLSSLKITKSRIYDTNPQVLTAFANSNIELI 79 (375)
Q Consensus 47 ~~~lk~~~~~~VRlY~~d~~vL~A~~~~gikV~ 79 (375)
+++|+..|+++||+.+.++.-+.++.+.||+|.
T Consensus 134 AQIL~dLGV~~mrLLtn~~~k~~~L~g~GleV~ 166 (197)
T PRK00393 134 ADMLKALGVKKVRLLTNNPKKVEALTEAGINIV 166 (197)
T ss_pred HHHHHHcCCCEEEECCCCHHHHHHHHhCCCEEE
Confidence 578899999999999998888889999999997
No 40
>cd04743 NPD_PKS 2-Nitropropane dioxygenase (NPD)-like domain, associated with polyketide synthases (PKS). NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=42.16 E-value=1.9e+02 Score=29.01 Aligned_cols=79 Identities=19% Similarity=0.175 Sum_probs=48.8
Q ss_pred ccceEEecCCCCCCCCHHHHHHHHhcCCCCEEEEccCChHHHHHHhhCCCeEEEEeccccccccCCHHHHHHHHHhcccc
Q 017202 27 TCLGVNYGQVANNLPPPDKVVDLLSSLKITKSRIYDTNPQVLTAFANSNIELIVTVENQMLAVLVDPQQALQWVSTHIKP 106 (375)
Q Consensus 27 ~~~GinYg~~~~n~ps~~~v~~~lk~~~~~~VRlY~~d~~vL~A~~~~gikV~lGV~n~~l~~la~~~~A~~wv~~~v~~ 106 (375)
..+|||.-...++ +..++.++.+...+.+.|=+..-+|...+.++..|++|+.-|+ +...|+.+.+..++
T Consensus 56 kPfGVnl~~~~~~-~~~~~~l~vi~e~~v~~V~~~~G~P~~~~~lk~~Gi~v~~~v~--------s~~~A~~a~~~GaD- 125 (320)
T cd04743 56 KPWGVGILGFVDT-ELRAAQLAVVRAIKPTFALIAGGRPDQARALEAIGISTYLHVP--------SPGLLKQFLENGAR- 125 (320)
T ss_pred CCeEEEEeccCCC-cchHHHHHHHHhcCCcEEEEcCCChHHHHHHHHCCCEEEEEeC--------CHHHHHHHHHcCCC-
Confidence 3577777443222 3334556655566677776555556556888889999997666 34566665553322
Q ss_pred cCCCceEEEEEecccc
Q 017202 107 YFPATKITGIAVGNEV 122 (375)
Q Consensus 107 ~~~~~~I~~I~VGNE~ 122 (375)
. .|+-|.|.
T Consensus 126 -----~--vVaqG~EA 134 (320)
T cd04743 126 -----K--FIFEGREC 134 (320)
T ss_pred -----E--EEEecCcC
Confidence 1 37789998
No 41
>cd02873 GH18_IDGF The IDGF's (imaginal disc growth factors) are a family of growth factors identified in insects that include at least five members, some of which are encoded by genes in a tight cluster. The IDGF's have an eight-stranded alpha/beta barrel fold and are related to the glycosyl hydrolase family 18 (GH18) chitinases, but they have an amino acid substitution known to abolish chitinase catalytic activity. IDGFs may have evolved from chitinases to gain new functions as growth factors, interacting with cell surface glycoproteins involved in growth-promoting processes.
Probab=41.62 E-value=1.2e+02 Score=31.13 Aligned_cols=20 Identities=20% Similarity=0.238 Sum_probs=16.8
Q ss_pred HHhHHHHHHHHHHHHHhcCC
Q 017202 131 IQNLVPATVSIHGALVQLGL 150 (375)
Q Consensus 131 ~~~Lv~am~~v~~aL~~~gl 150 (375)
...++..|+++|++|+..++
T Consensus 168 ~~nf~~Ll~elr~~l~~~~~ 187 (413)
T cd02873 168 KEQFTALVRELKNALRPDGL 187 (413)
T ss_pred HHHHHHHHHHHHHHhcccCc
Confidence 56788899999999987765
No 42
>PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of beta-galactosidase enzymes (3.2.1.23 from EC) belong to the glycosyl hydrolase 42 family GH42 from CAZY. The enzyme catalyses the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1KWK_A 1KWG_A 3U7V_A.
Probab=39.18 E-value=1.9e+02 Score=29.04 Aligned_cols=55 Identities=9% Similarity=-0.069 Sum_probs=31.4
Q ss_pred HHhHHHHHHHHHHHHHhcCCCCceeEecccccccccccCCCCCCccchhhHHHHHHHHHHhhhCCCCeeeecccc
Q 017202 131 IQNLVPATVSIHGALVQLGLDKYIQVSTPNSLAVLEESYPPSAGSFKTEVAGIMSQYLQFLSSTKAPFWINAYTY 205 (375)
Q Consensus 131 ~~~Lv~am~~v~~aL~~~gl~~~IkVsT~~~~~v~~~~~pPS~g~F~~~~~~~l~~~~dfL~~~~sp~~vNiyPy 205 (375)
...+...++.+++.|++..- +.+|+|..... +.. ..|. ..+...+|+ +..|.||.
T Consensus 208 ~~~~~~~~~~~~~~ir~~~p--~~~vt~n~~~~-~~~---------~~d~-~~~a~~~D~-------~~~d~Y~~ 262 (374)
T PF02449_consen 208 SDRVAEFFRWQADIIREYDP--DHPVTTNFMGS-WFN---------GIDY-FKWAKYLDV-------VSWDSYPD 262 (374)
T ss_dssp HHHHHHHHHHHHHHHHHHST--T-EEE-EE-TT-------------SS-H-HHHGGGSSS-------EEEEE-HH
T ss_pred HHHHHHHHHHHHHHHHHhCC--CceEEeCcccc-ccC---------cCCH-HHHHhhCCc-------ceeccccC
Confidence 45788999999999998863 46788753221 111 0111 123445566 89999998
No 43
>COG2159 Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]
Probab=39.11 E-value=2e+02 Score=28.08 Aligned_cols=94 Identities=13% Similarity=0.194 Sum_probs=53.7
Q ss_pred HHHHHHHHHHhcCCCCceeEecccccccccccCCCCCCccchhhHHHHHHHHHHhhhCCCCeeeeccccccccCCCCccC
Q 017202 137 ATVSIHGALVQLGLDKYIQVSTPNSLAVLEESYPPSAGSFKTEVAGIMSQYLQFLSSTKAPFWINAYTYFAYKDAPNRIS 216 (375)
Q Consensus 137 am~~v~~aL~~~gl~~~IkVsT~~~~~v~~~~~pPS~g~F~~~~~~~l~~~~dfL~~~~sp~~vNiyPyf~~~~~~~~i~ 216 (375)
+.+++++..++.|+.+ +++..... ..+| + .+.+.++..++.+.|.|+.+|.=+.+... .
T Consensus 114 a~~E~er~v~~~gf~g-~~l~p~~~-----~~~~------~---~~~~~pi~~~a~~~gvpv~ihtG~~~~~~------~ 172 (293)
T COG2159 114 AAEELERRVRELGFVG-VKLHPVAQ-----GFYP------D---DPRLYPIYEAAEELGVPVVIHTGAGPGGA------G 172 (293)
T ss_pred HHHHHHHHHHhcCceE-EEeccccc-----CCCC------C---ChHHHHHHHHHHHcCCCEEEEeCCCCCCc------c
Confidence 4566677777777754 55543221 1121 1 13467889999999999999664433322 1
Q ss_pred ccccccCCCCCcccCCCCcccchHHHHHHHHHHHHHHHcCCCCceEEEeecc--CCCCCC
Q 017202 217 LDYALFNPNSGMVDPYTKLHYDNMLYAQVDAAIFAMARLGYNGIEVRVSETG--WPSKGD 274 (375)
Q Consensus 217 l~~a~f~~~~~~~d~~~~~~y~n~fda~~dav~~al~~~g~~~~~vvItETG--WPs~G~ 274 (375)
++...+.+ -++|.+ +. -+|+++||+++.| +|..-.
T Consensus 173 ~~~~~~~p------------------~~~~~v---a~--~fP~l~IVl~H~G~~~p~~~~ 209 (293)
T COG2159 173 LEKGHSDP------------------LYLDDV---AR--KFPELKIVLGHMGEDYPWELE 209 (293)
T ss_pred cccCCCCc------------------hHHHHH---HH--HCCCCcEEEEecCCCCchhHH
Confidence 11100100 022322 22 2799999999999 888654
No 44
>cd02872 GH18_chitolectin_chitotriosidase This conserved domain family includes a large number of catalytically inactive chitinase-like lectins (chitolectins) including YKL-39, YKL-40 (HCGP39), YM1, oviductin, and AMCase (acidic mammalian chitinase), as well as catalytically active chitotriosidases. The conserved domain is an eight-stranded alpha/beta barrel fold belonging to the family 18 glycosyl hydrolases. The fold has a pronounced active-site cleft at the C-terminal end of the beta-barrel. The chitolectins lack a key active site glutamate (the proton donor required for hydrolytic activity) but retain highly conserved residues involved in oligosaccharide binding. Chitotriosidase is a chitinolytic enzyme expressed in maturing macrophages, which suggests that it plays a part in antimicrobial defense. Chitotriosidase hydrolyzes chitotriose, as well as colloidal chitin to yield chitobiose and is therefore considered an exochitinase. Chitotriosidase occurs in two major forms, the la
Probab=38.96 E-value=75 Score=31.57 Aligned_cols=58 Identities=16% Similarity=0.340 Sum_probs=34.2
Q ss_pred HHhHHHHHHHHHHHHHhcCCCCceeEeccccc--ccccccCCCCCCccchhhHHHHHHHHHHhhhCCCCeeeecccccc
Q 017202 131 IQNLVPATVSIHGALVQLGLDKYIQVSTPNSL--AVLEESYPPSAGSFKTEVAGIMSQYLQFLSSTKAPFWINAYTYFA 207 (375)
Q Consensus 131 ~~~Lv~am~~v~~aL~~~gl~~~IkVsT~~~~--~v~~~~~pPS~g~F~~~~~~~l~~~~dfL~~~~sp~~vNiyPyf~ 207 (375)
...++..|+++|++|++.+- ...++.+... ..+.. .| ++ +.|.+.+|| +.+-.|-|..
T Consensus 133 ~~~~~~ll~~lr~~l~~~~~--~~~ls~av~~~~~~~~~-------~~--d~-~~l~~~vD~-------v~vmtYD~~~ 192 (362)
T cd02872 133 KENFVTLLKELREAFEPEAP--RLLLTAAVSAGKETIDA-------AY--DI-PEISKYLDF-------INVMTYDFHG 192 (362)
T ss_pred HHHHHHHHHHHHHHHHhhCc--CeEEEEEecCChHHHhh-------cC--CH-HHHhhhcce-------EEEecccCCC
Confidence 56799999999999998731 1234433321 11111 11 12 457788899 6666666543
No 45
>PF01229 Glyco_hydro_39: Glycosyl hydrolases family 39; InterPro: IPR000514 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 39 GH39 from CAZY comprises enzymes with several known activities; alpha-L-iduronidase (3.2.1.76 from EC); beta-xylosidase (3.2.1.37 from EC). The most highly conserved regions in these enzymes are located in their N-terminal sections. These contain a glutamic acid residue which, on the basis of similarities with other families of glycosyl hydrolases [], probably acts as the proton donor in their catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 2BS9_D 2BFG_E 1W91_B 1UHV_D 1PX8_A.
Probab=36.91 E-value=5.1e+02 Score=27.07 Aligned_cols=250 Identities=17% Similarity=0.220 Sum_probs=109.7
Q ss_pred HHHHhcCCCCEEEEccC---C--------------------hHHHHHHhhCCCeEEEEec--cccccc-----c------
Q 017202 47 VDLLSSLKITKSRIYDT---N--------------------PQVLTAFANSNIELIVTVE--NQMLAV-----L------ 90 (375)
Q Consensus 47 ~~~lk~~~~~~VRlY~~---d--------------------~~vL~A~~~~gikV~lGV~--n~~l~~-----l------ 90 (375)
..+.+..||+.||+... | -.++..+.+.|++-+|-+- ...+.+ .
T Consensus 46 ~~~~~~~gf~yvR~h~l~~ddm~~~~~~~~~~~~~Ynf~~lD~i~D~l~~~g~~P~vel~f~p~~~~~~~~~~~~~~~~~ 125 (486)
T PF01229_consen 46 RELQEELGFRYVRFHGLFSDDMMVYSESDEDGIPPYNFTYLDQILDFLLENGLKPFVELGFMPMALASGYQTVFWYKGNI 125 (486)
T ss_dssp HHHHCCS--SEEEES-TTSTTTT-EEEEETTEEEEE--HHHHHHHHHHHHCT-EEEEEE-SB-GGGBSS--EETTTTEE-
T ss_pred HHHHhccCceEEEEEeeccCchhhccccccCCCCcCChHHHHHHHHHHHHcCCEEEEEEEechhhhcCCCCccccccCCc
Confidence 33445679999998732 1 1378888899999765543 111110 0
Q ss_pred ---CCHHH----HHHHHHhcccccCCCceEE--EEEeccccccC--CCchhHHhHHHHHHHHHHHHHhcCCCCceeEecc
Q 017202 91 ---VDPQQ----ALQWVSTHIKPYFPATKIT--GIAVGNEVFTD--DDTSLIQNLVPATVSIHGALVQLGLDKYIQVSTP 159 (375)
Q Consensus 91 ---a~~~~----A~~wv~~~v~~~~~~~~I~--~I~VGNE~l~~--~~~~~~~~Lv~am~~v~~aL~~~gl~~~IkVsT~ 159 (375)
.+... ..++++..+..|. ...|. ..=|=||.=.. +......+-....+.+.++||+.. ..+||+-+
T Consensus 126 ~pp~~~~~W~~lv~~~~~h~~~RYG-~~ev~~W~fEiWNEPd~~~f~~~~~~~ey~~ly~~~~~~iK~~~--p~~~vGGp 202 (486)
T PF01229_consen 126 SPPKDYEKWRDLVRAFARHYIDRYG-IEEVSTWYFEIWNEPDLKDFWWDGTPEEYFELYDATARAIKAVD--PELKVGGP 202 (486)
T ss_dssp S-BS-HHHHHHHHHHHHHHHHHHHH-HHHHTTSEEEESS-TTSTTTSGGG-HHHHHHHHHHHHHHHHHH---TTSEEEEE
T ss_pred CCcccHHHHHHHHHHHHHHHHhhcC-CccccceeEEeCcCCCcccccCCCCHHHHHHHHHHHHHHHHHhC--CCCcccCc
Confidence 01111 2233333333331 11111 34568886332 111224557777788888888765 35888876
Q ss_pred cccccccccCCCCCCccchhhHHHHHHHHHHhhhCCCC---eeeeccccccccCCCCccCccccccCCCCCcccCCCCcc
Q 017202 160 NSLAVLEESYPPSAGSFKTEVAGIMSQYLQFLSSTKAP---FWINAYTYFAYKDAPNRISLDYALFNPNSGMVDPYTKLH 236 (375)
Q Consensus 160 ~~~~v~~~~~pPS~g~F~~~~~~~l~~~~dfL~~~~sp---~~vNiyPyf~~~~~~~~i~l~~a~f~~~~~~~d~~~~~~ 236 (375)
-.. +. . ...+...++|+.+.+.| +..|.||+-......... .. .+. .
T Consensus 203 ~~~--~~--~-----------~~~~~~~l~~~~~~~~~~DfiS~H~y~~~~~~~~~~~~---~~-------~~~-----~ 252 (486)
T PF01229_consen 203 AFA--WA--Y-----------DEWCEDFLEFCKGNNCPLDFISFHSYGTDSAEDINENM---YE-------RIE-----D 252 (486)
T ss_dssp EEE--TT--------------THHHHHHHHHHHHCT---SEEEEEEE-BESESE-SS-E---EE-------EB-------
T ss_pred ccc--cc--H-----------HHHHHHHHHHHhcCCCCCCEEEEEecccccccccchhH---Hh-------hhh-----h
Confidence 110 10 0 12344555666655544 567777753221110000 00 010 1
Q ss_pred cchHHHHHHHHHHHHHHHcCCCCceEEEeeccCCCCCCCCC-CCCCHHHHHHHHHHHHHHHHhcCCCCCCCCCcccEEE-
Q 017202 237 YDNMLYAQVDAAIFAMARLGYNGIEVRVSETGWPSKGDPNE-VGATVVNAATYNKNLLRRQMANEGTPLRPNMRLEVYL- 314 (375)
Q Consensus 237 y~n~fda~~dav~~al~~~g~~~~~vvItETGWPs~G~~~~-~~As~~na~~y~~~~i~~~~~~~Gtp~rp~~~i~~y~- 314 (375)
...+++. +..+...+...+.+++++.++| |.+.-.... -.-|.-+|+...+++++.... .++.|-
T Consensus 253 ~~~~~~~-~~~~~~~~~~e~~p~~~~~~tE--~n~~~~~~~~~~dt~~~aA~i~k~lL~~~~~----------~l~~~sy 319 (486)
T PF01229_consen 253 SRRLFPE-LKETRPIINDEADPNLPLYITE--WNASISPRNPQHDTCFKAAYIAKNLLSNDGA----------FLDSFSY 319 (486)
T ss_dssp HHHHHHH-HHHHHHHHHTSSSTT--EEEEE--EES-SSTT-GGGGSHHHHHHHHH-HHHHGGG----------T-SEEEE
T ss_pred HHHHHHH-HHHHHHHHhhccCCCCceeecc--cccccCCCcchhccccchhhHHHHHHHhhhh----------hhhhhhc
Confidence 1122222 2222234455678899999999 877655322 234556666666666666531 133322
Q ss_pred --EE-eecCCCCCCCCCCCceeeecCCCcee
Q 017202 315 --FA-LFNEDMKPGPTSERNYGLFQPDGTMA 342 (375)
Q Consensus 315 --F~-~fDe~wK~g~~~E~~wGlf~~d~~~k 342 (375)
|+ .|.|.--+..-+-.-|||++.++-+|
T Consensus 320 wt~sD~Fee~~~~~~pf~ggfGLlt~~gI~K 350 (486)
T PF01229_consen 320 WTFSDRFEENGTPRKPFHGGFGLLTKLGIPK 350 (486)
T ss_dssp S-SBS---TTSS-SSSSSS-S-SEECCCEE-
T ss_pred cchhhhhhccCCCCCceecchhhhhccCCCc
Confidence 21 23332222112556699999998776
No 46
>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....
Probab=35.36 E-value=3.6e+02 Score=24.87 Aligned_cols=100 Identities=12% Similarity=0.236 Sum_probs=58.3
Q ss_pred CHHHHHHHHhcCCCCEEEEc-cC-C--hHHHHHHhhCCCeEEEEeccccccccCCHHHHHHHHHhcccccCCC-ceEEEE
Q 017202 42 PPDKVVDLLSSLKITKSRIY-DT-N--PQVLTAFANSNIELIVTVENQMLAVLVDPQQALQWVSTHIKPYFPA-TKITGI 116 (375)
Q Consensus 42 s~~~v~~~lk~~~~~~VRlY-~~-d--~~vL~A~~~~gikV~lGV~n~~l~~la~~~~A~~wv~~~v~~~~~~-~~I~~I 116 (375)
.|++.++.++..|.+.|=+- ++ + .++++.+++.|+++-|.++... .+ +.+.+|.+. +.|...
T Consensus 68 ~P~~~i~~~~~~g~~~i~~H~E~~~~~~~~i~~ik~~g~k~GialnP~T--~~-----------~~~~~~l~~vD~VlvM 134 (201)
T PF00834_consen 68 NPERYIEEFAEAGADYITFHAEATEDPKETIKYIKEAGIKAGIALNPET--PV-----------EELEPYLDQVDMVLVM 134 (201)
T ss_dssp SGGGHHHHHHHHT-SEEEEEGGGTTTHHHHHHHHHHTTSEEEEEE-TTS---G-----------GGGTTTGCCSSEEEEE
T ss_pred cHHHHHHHHHhcCCCEEEEcccchhCHHHHHHHHHHhCCCEEEEEECCC--Cc-----------hHHHHHhhhcCEEEEE
Confidence 45666776766666655332 22 2 3588999999999988776432 11 113444443 334333
Q ss_pred EeccccccCCCchhHHhHHHHHHHHHHHHHhcCCCCceeEe
Q 017202 117 AVGNEVFTDDDTSLIQNLVPATVSIHGALVQLGLDKYIQVS 157 (375)
Q Consensus 117 ~VGNE~l~~~~~~~~~~Lv~am~~v~~aL~~~gl~~~IkVs 157 (375)
+| |.=.++ +.+.+..++.|+.+|+.+.+.|++-.|-|.
T Consensus 135 sV--~PG~~G-q~f~~~~~~KI~~l~~~~~~~~~~~~I~vD 172 (201)
T PF00834_consen 135 SV--EPGFGG-QKFIPEVLEKIRELRKLIPENGLDFEIEVD 172 (201)
T ss_dssp SS---TTTSS-B--HGGHHHHHHHHHHHHHHHTCGSEEEEE
T ss_pred Ee--cCCCCc-ccccHHHHHHHHHHHHHHHhcCCceEEEEE
Confidence 33 331222 446788999999999999998875444443
No 47
>PF07071 DUF1341: Protein of unknown function (DUF1341); InterPro: IPR010763 Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.; PDB: 3NZR_D 3LM7_A 3M0Z_B 3M6Y_A 3N73_A 3MUX_A.
Probab=34.63 E-value=41 Score=31.56 Aligned_cols=61 Identities=15% Similarity=0.239 Sum_probs=36.0
Q ss_pred hhhhcccccccceEEecCCCCCCC----CHHHHHHHHhcCCCCEEEEccCC--------hHHHHHHhhCCCeE
Q 017202 18 SLTFSDFGVTCLGVNYGQVANNLP----PPDKVVDLLSSLKITKSRIYDTN--------PQVLTAFANSNIEL 78 (375)
Q Consensus 18 ~~~~~~~~~~~~GinYg~~~~n~p----s~~~v~~~lk~~~~~~VRlY~~d--------~~vL~A~~~~gikV 78 (375)
+|.|.+...+.+=|+-|+.....+ +-+.-+.+|+.+|.+.|+.|-.. ..+-+|+++.|+.+
T Consensus 108 aLvsPTG~~G~VkIsTGp~Ss~~~~~~V~vetAiaml~dmG~~SiKffPm~Gl~~leE~~avAkA~a~~g~~l 180 (218)
T PF07071_consen 108 ALVSPTGTPGKVKISTGPLSSQGPDAIVPVETAIAMLKDMGGSSIKFFPMGGLKHLEELKAVAKACARNGFTL 180 (218)
T ss_dssp EEEBE-SSTTEEE---STTHHGSS--EEEHHHHHHHHHHTT--EEEE---TTTTTHHHHHHHHHHHHHCT-EE
T ss_pred EEEcCCCCceEEEeccCCccccCCCccccHHHHHHHHHHcCCCeeeEeecCCcccHHHHHHHHHHHHHcCcee
Confidence 455566667777777777633322 44566789999999999999664 23778889999887
No 48
>PLN03059 beta-galactosidase; Provisional
Probab=34.56 E-value=7.4e+02 Score=28.24 Aligned_cols=153 Identities=10% Similarity=0.043 Sum_probs=85.9
Q ss_pred hhhHHHHHHHHHHhhhhcccccccceEEecCC-----CC---------CC--CCHHH---HHHHHhcCCCCEEEEccC--
Q 017202 5 CRNIALIPFFLLLSLTFSDFGVTCLGVNYGQV-----AN---------NL--PPPDK---VVDLLSSLKITKSRIYDT-- 63 (375)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~GinYg~~-----~~---------n~--ps~~~---v~~~lk~~~~~~VRlY~~-- 63 (375)
...+.+++||++|..++=.... ...|.|+.. |. +. .+|+. ..+.+|..|++.|-+|-.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~-~~~v~~d~~~f~idG~p~~i~sG~iHY~R~~p~~W~d~L~k~Ka~GlNtV~tYV~Wn 83 (840)
T PLN03059 5 SLVVFLLLFLLFLLSSSWVSHG-SASVSYDHRAFIINGQRRILISGSIHYPRSTPEMWPDLIQKAKDGGLDVIQTYVFWN 83 (840)
T ss_pred ceehhhHHHHHHHhhhhhhccc-eeEEEEeCCEEEECCEEEEEEEeCcccCcCCHHHHHHHHHHHHHcCCCeEEEEeccc
Confidence 3345556666655554433222 235777632 11 11 24554 445667899999999922
Q ss_pred ----C------------hHHHHHHhhCCCeEEEEe---------------cccccccc---C-CH---HHHHHHHHhccc
Q 017202 64 ----N------------PQVLTAFANSNIELIVTV---------------ENQMLAVL---V-DP---QQALQWVSTHIK 105 (375)
Q Consensus 64 ----d------------~~vL~A~~~~gikV~lGV---------------~n~~l~~l---a-~~---~~A~~wv~~~v~ 105 (375)
. ..-|+.+++.||-|+|=. |.-..+.+ . |+ .+.++|+..-+.
T Consensus 84 ~HEp~~G~~dF~G~~DL~~Fl~la~e~GLyvilRpGPYIcAEw~~GGlP~WL~~~~~i~~Rs~d~~fl~~v~~~~~~l~~ 163 (840)
T PLN03059 84 GHEPSPGNYYFEDRYDLVKFIKVVQAAGLYVHLRIGPYICAEWNFGGFPVWLKYVPGIEFRTDNGPFKAAMQKFTEKIVD 163 (840)
T ss_pred ccCCCCCeeeccchHHHHHHHHHHHHcCCEEEecCCcceeeeecCCCCchhhhcCCCcccccCCHHHHHHHHHHHHHHHH
Confidence 1 236788889999998743 21111221 1 33 345566554322
Q ss_pred -----cc-C-CCceEEEEEeccccccCCCchhHHhHHHHHHHHHHHHHhcCCCCceeEecccc
Q 017202 106 -----PY-F-PATKITGIAVGNEVFTDDDTSLIQNLVPATVSIHGALVQLGLDKYIQVSTPNS 161 (375)
Q Consensus 106 -----~~-~-~~~~I~~I~VGNE~l~~~~~~~~~~Lv~am~~v~~aL~~~gl~~~IkVsT~~~ 161 (375)
++ + .+-.|..+=|-||-=.-. ......=-.||+.+++.++++|++ |+.-|.+.
T Consensus 164 ~l~~~~l~~~~GGPIImvQIENEYGs~~-~~~~~~d~~Yl~~l~~~~~~~Gi~--VPl~t~dg 223 (840)
T PLN03059 164 MMKSEKLFEPQGGPIILSQIENEYGPVE-WEIGAPGKAYTKWAADMAVKLGTG--VPWVMCKQ 223 (840)
T ss_pred HHhhcceeecCCCcEEEEEeccccccee-cccCcchHHHHHHHHHHHHHcCCC--cceEECCC
Confidence 22 1 224688999999962210 000112357999999999999984 66666553
No 49
>TIGR03632 bact_S11 30S ribosomal protein S11. This model describes the bacterial 30S ribosomal protein S11. Cutoffs are set such that the model excludes archaeal and eukaryotic ribosomal proteins, but many chloroplast and mitochondrial equivalents of S11 are detected.
Probab=32.99 E-value=98 Score=25.79 Aligned_cols=36 Identities=8% Similarity=0.280 Sum_probs=27.3
Q ss_pred HHHHHHHhcCCCCEEEEc--cCC---hHHHHHHhhCCCeEE
Q 017202 44 DKVVDLLSSLKITKSRIY--DTN---PQVLTAFANSNIELI 79 (375)
Q Consensus 44 ~~v~~~lk~~~~~~VRlY--~~d---~~vL~A~~~~gikV~ 79 (375)
+++.+.++.+|++.|+++ +.. ..+|.++...|+++.
T Consensus 50 ~~~~~~~~~~gi~~v~v~~kG~G~gr~~~ir~l~~~glkI~ 90 (108)
T TIGR03632 50 EDAAKKAKEFGMKTVDVYVKGPGAGRESAIRALQAAGLEVT 90 (108)
T ss_pred HHHHHHHHHcCCcEEEEEEECCCCcHHHHHHHHHHCCCEEE
Confidence 345566677899988888 343 469999999999865
No 50
>PRK12485 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II-like protein; Provisional
Probab=32.54 E-value=52 Score=33.53 Aligned_cols=32 Identities=19% Similarity=0.366 Sum_probs=28.9
Q ss_pred HHHHhcCCCCEEEEccCChHHHHHHhhCCCeEE
Q 017202 47 VDLLSSLKITKSRIYDTNPQVLTAFANSNIELI 79 (375)
Q Consensus 47 ~~~lk~~~~~~VRlY~~d~~vL~A~~~~gikV~ 79 (375)
.++|+..|+++||+. .+|.=+.++.+.||+|.
T Consensus 331 AqILr~LGV~kirLL-nNP~K~~~L~~~GIeV~ 362 (369)
T PRK12485 331 AQILQDLGVGKLRHL-GPPLKYAGLTGYDLEVV 362 (369)
T ss_pred HHHHHHcCCCEEEEC-CCchhhhhhhhCCcEEE
Confidence 579999999999999 78888888999999987
No 51
>COG3934 Endo-beta-mannanase [Carbohydrate transport and metabolism]
Probab=32.38 E-value=77 Score=33.57 Aligned_cols=186 Identities=17% Similarity=0.225 Sum_probs=98.8
Q ss_pred HHHHHhcccccCCCceEEEEEeccccccCCCchhHHhHHHHHHHHHHHHHhcCCCCceeEecccccccccccCCCCCCcc
Q 017202 97 LQWVSTHIKPYFPATKITGIAVGNEVFTDDDTSLIQNLVPATVSIHGALVQLGLDKYIQVSTPNSLAVLEESYPPSAGSF 176 (375)
Q Consensus 97 ~~wv~~~v~~~~~~~~I~~I~VGNE~l~~~~~~~~~~Lv~am~~v~~aL~~~gl~~~IkVsT~~~~~v~~~~~pPS~g~F 176 (375)
.+.+..-|.+|--+..|.+-..-||.+.+-+. ....++...+.+..-++..+=+.-|.|+-+.+. |.. |-|-++.|
T Consensus 123 kkyvedlVk~yk~~ptI~gw~l~Ne~lv~~p~-s~N~f~~w~~emy~yiK~ldd~hlvsvGD~~sp--~~~-~~pyN~r~ 198 (587)
T COG3934 123 KKYVEDLVKPYKLDPTIAGWALRNEPLVEAPI-SVNNFWDWSGEMYAYIKWLDDGHLVSVGDPASP--WPQ-YAPYNARF 198 (587)
T ss_pred HHHHHHHhhhhccChHHHHHHhcCCccccccC-ChhHHHHHHHHHHHHhhccCCCCeeecCCcCCc--ccc-cCCcccce
Confidence 34555556677555668788888997765433 467788888888888887664433444444332 322 23334444
Q ss_pred chhhHHHHHHHHHHhhhCCCCeeeeccccccccCCCCccCccccccCCCCCcccCCCCcccchHHHHHHHHHHHHHHHcC
Q 017202 177 KTEVAGIMSQYLQFLSSTKAPFWINAYTYFAYKDAPNRISLDYALFNPNSGMVDPYTKLHYDNMLYAQVDAAIFAMARLG 256 (375)
Q Consensus 177 ~~~~~~~l~~~~dfL~~~~sp~~vNiyPyf~~~~~~~~i~l~~a~f~~~~~~~d~~~~~~y~n~fda~~dav~~al~~~g 256 (375)
.+|| -.-|+||+|... +. ....+..+ . ..+|- -..+
T Consensus 199 ----------~vDy-------a~~hLY~hyd~s--l~-~r~s~~yg----------------~---~~l~i----~~~~- 234 (587)
T COG3934 199 ----------YVDY-------AANHLYRHYDTS--LV-SRVSTVYG----------------K---PYLDI----PTIM- 234 (587)
T ss_pred ----------eecc-------ccchhhhhccCC--hh-heeeeeec----------------c---hhhcc----chhc-
Confidence 4566 677999977643 20 11111111 0 01110 0011
Q ss_pred CCCceEEEeeccCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCCCCCCcccEEEEEeecCCCC--CCC--CCCCce
Q 017202 257 YNGIEVRVSETGWPSKGDPNEVGATVVNAATYNKNLLRRQMANEGTPLRPNMRLEVYLFALFNEDMK--PGP--TSERNY 332 (375)
Q Consensus 257 ~~~~~vvItETGWPs~G~~~~~~As~~na~~y~~~~i~~~~~~~Gtp~rp~~~i~~y~F~~fDe~wK--~g~--~~E~~w 332 (375)
+-+||+.-|-|-|++=+ .+|.+.|.-.... +....| .+.-..-|+-|-+--- ++. --|-.|
T Consensus 235 -g~~pV~leefGfsta~g-------~e~s~ayfiw~~l-al~~gg------dGaLiwclsdf~~gsdd~ey~w~p~el~f 299 (587)
T COG3934 235 -GWQPVNLEEFGFSTAFG-------QENSPAYFIWIRL-ALDTGG------DGALIWCLSDFHLGSDDSEYTWGPMELEF 299 (587)
T ss_pred -ccceeeccccCCccccc-------ccccchhhhhhhh-HHhhcC------CceEEEEecCCccCCCCCCCcccccccee
Confidence 24899999999999744 2233333222221 222111 1223333443331111 110 257789
Q ss_pred eeecCCCceeEee
Q 017202 333 GLFQPDGTMAYNV 345 (375)
Q Consensus 333 Glf~~d~~~ky~l 345 (375)
||.+.|+.+|++.
T Consensus 300 giIradgpek~~a 312 (587)
T COG3934 300 GIIRADGPEKIDA 312 (587)
T ss_pred eeecCCCchhhhH
Confidence 9999999999843
No 52
>cd00641 GTP_cyclohydro2 GTP cyclohydrolase II (RibA). GTP cyclohydrolase II catalyzes the conversion of GTP to 2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5' phosphate, formate, pyrophosphate (APy), and GMP in the biosynthetic pathway of riboflavin. Riboflavin is the precursor molecule for the synthesis of the coenzymes flavin mononucleotide (FMN) and flavin adenine dinucleotide (FAD) which are essential to cell metabolism. The enzyme is present in plants and numerous pathogenic bacteria, especially gram negative organisms, who are dependent on endogenous synthesis of the vitamin because they lack an appropriate uptake system. For animals and humans, which lack this biosynthetic pathway, riboflavin is the essential vitamin B2. GTP cyclohydrolase II requires magnesium ions for activity and has a bound catalytic zinc. The functionally active form is thought to be a homodimer. A paralogous protein is encoded in the genome of Streptomyces coelicolor, which converts GTP to 2-amino-5-fo
Probab=32.36 E-value=68 Score=29.38 Aligned_cols=34 Identities=26% Similarity=0.486 Sum_probs=30.0
Q ss_pred HHHHhcCCCCEEEEccCChHHHHHHhhCCCeEEE
Q 017202 47 VDLLSSLKITKSRIYDTNPQVLTAFANSNIELIV 80 (375)
Q Consensus 47 ~~~lk~~~~~~VRlY~~d~~vL~A~~~~gikV~l 80 (375)
.++|+..|+.++|+.+..+.-+.++.+.|++|.=
T Consensus 133 AQIL~dLGv~~mrLLs~~~~k~~~L~gfglevv~ 166 (193)
T cd00641 133 AQILRDLGIKSVRLLTNNPDKIDALEGYGIEVVE 166 (193)
T ss_pred HHHHHHcCCCeEEECCCCHHHHHHHHhCCCEEEE
Confidence 5788899999999999888788899999999983
No 53
>PRK09989 hypothetical protein; Provisional
Probab=31.84 E-value=4.3e+02 Score=24.66 Aligned_cols=164 Identities=13% Similarity=0.135 Sum_probs=82.2
Q ss_pred ceEEecCCCCCCCCHHHHHHHHhcCCCCEEEEc---cCC-hHHHHHHhhCCCeEEE-Eecccccc-------ccC-CHHH
Q 017202 29 LGVNYGQVANNLPPPDKVVDLLSSLKITKSRIY---DTN-PQVLTAFANSNIELIV-TVENQMLA-------VLV-DPQQ 95 (375)
Q Consensus 29 ~GinYg~~~~n~ps~~~v~~~lk~~~~~~VRlY---~~d-~~vL~A~~~~gikV~l-GV~n~~l~-------~la-~~~~ 95 (375)
+.+|.+.....+ +-.+.++.+++.||+.|-+. +-+ .++.+.++++||++.. +.+..++. ... +...
T Consensus 4 ~~~~~~~~~~~~-~l~~~l~~~~~~Gfd~VEl~~~~~~~~~~~~~~l~~~Gl~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (258)
T PRK09989 4 FAANLSMMFTEV-PFIERFAAARKAGFDAVEFLFPYDYSTLQIQKQLEQNHLTLALFNTAPGDINAGEWGLSALPGREHE 82 (258)
T ss_pred eeeehhhhhcCC-CHHHHHHHHHHcCCCEEEECCcccCCHHHHHHHHHHcCCcEEEeccCCCccCCCCCcccCCCccHHH
Confidence 455666554444 56788889999999999984 333 4577788899999876 32211111 111 2233
Q ss_pred HHHHHHhcccc--cCCCceEEEEEeccccccCCC-chhHHhHHHHHHHHHHHHHhcCCCCceeEecccccccccccCCCC
Q 017202 96 ALQWVSTHIKP--YFPATKITGIAVGNEVFTDDD-TSLIQNLVPATVSIHGALVQLGLDKYIQVSTPNSLAVLEESYPPS 172 (375)
Q Consensus 96 A~~wv~~~v~~--~~~~~~I~~I~VGNE~l~~~~-~~~~~~Lv~am~~v~~aL~~~gl~~~IkVsT~~~~~v~~~~~pPS 172 (375)
+.+.+++.+.- -.....| .+..|.-. ...+ ......++..++.+-...+..|.. +.+-. +...+-+.
T Consensus 83 ~~~~l~~~i~~A~~lg~~~v-~v~~g~~~-~~~~~~~~~~~~~~~l~~l~~~a~~~gv~--l~lE~------l~~~~~~~ 152 (258)
T PRK09989 83 ARADIDLALEYALALNCEQV-HVMAGVVP-AGEDAERYRAVFIDNLRYAADRFAPHGKR--ILVEA------LSPGVKPH 152 (258)
T ss_pred HHHHHHHHHHHHHHhCcCEE-EECccCCC-CCCCHHHHHHHHHHHHHHHHHHHHhcCCE--EEEEe------CCCCCCCC
Confidence 33334433211 1121222 34445311 1111 112345777777777777766641 32221 11001010
Q ss_pred CCccchhhHHHHHHHHHHhhhCCCC-eeeecccccccc
Q 017202 173 AGSFKTEVAGIMSQYLQFLSSTKAP-FWINAYTYFAYK 209 (375)
Q Consensus 173 ~g~F~~~~~~~l~~~~dfL~~~~sp-~~vNiyPyf~~~ 209 (375)
..++ -...+.++|.+.+++ +.+..-.||...
T Consensus 153 -~~~~-----~~~~~~~ll~~v~~~~v~l~lD~~h~~~ 184 (258)
T PRK09989 153 -YLFS-----SQYQALAIVEEVARDNVFIQLDTFHAQK 184 (258)
T ss_pred -CccC-----CHHHHHHHHHHcCCCCeEEEeehHhHHH
Confidence 0111 124567778777765 666666666554
No 54
>PRK14019 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II-like protein; Provisional
Probab=31.53 E-value=56 Score=33.28 Aligned_cols=33 Identities=18% Similarity=0.398 Sum_probs=29.7
Q ss_pred HHHHhcCCCCEEEEccCChHHHHHHhhCCCeEEE
Q 017202 47 VDLLSSLKITKSRIYDTNPQVLTAFANSNIELIV 80 (375)
Q Consensus 47 ~~~lk~~~~~~VRlY~~d~~vL~A~~~~gikV~l 80 (375)
.++|+..|+++||+.. +|.=+.++.+.||+|.=
T Consensus 328 aqIL~~Lgv~~irLlT-np~K~~~L~~~Gi~V~~ 360 (367)
T PRK14019 328 AQILRDLGVGKMRLLS-SPRKFPSMSGFGLEVTG 360 (367)
T ss_pred HHHHHHcCCCeEEECC-CcHHHHhhhhCCcEEEE
Confidence 5789999999999999 88888899999999873
No 55
>TIGR01233 lacG 6-phospho-beta-galactosidase. This enzyme is part of the tagatose-6-phosphate pathway of galactose-6-phosphate degradation.
Probab=31.39 E-value=94 Score=32.57 Aligned_cols=75 Identities=17% Similarity=0.251 Sum_probs=43.6
Q ss_pred CCC-ceEEEeeccCCCCCCCC-CC---CCCHHHHHHHHHHHHHHHHhcCCCCCCCCCcccEEEEEeecC-CCCCCCCCCC
Q 017202 257 YNG-IEVRVSETGWPSKGDPN-EV---GATVVNAATYNKNLLRRQMANEGTPLRPNMRLEVYLFALFNE-DMKPGPTSER 330 (375)
Q Consensus 257 ~~~-~~vvItETGWPs~G~~~-~~---~As~~na~~y~~~~i~~~~~~~Gtp~rp~~~i~~y~F~~fDe-~wK~g~~~E~ 330 (375)
++. .+|+|||-|........ +. .--.+--+.|++.+.+.+. .|-+ -.-||.-++.|- .|.. +..+
T Consensus 364 Y~~~ppi~ItENG~~~~d~~~~g~i~D~~Ri~Yl~~hl~~~~~Ai~--dGv~-----v~GY~~WSl~Dn~Ew~~--Gy~~ 434 (467)
T TIGR01233 364 YPNYKKIYITENGLGYKDEFVDNTVYDDGRIDYVKQHLEVLSDAIA--DGAN-----VKGYFIWSLMDVFSWSN--GYEK 434 (467)
T ss_pred cCCCCCEEEeCCCCCCCCCCCCCccCCHHHHHHHHHHHHHHHHHHH--cCCC-----EEEEeeccchhhhchhc--cccC
Confidence 444 47999999998654211 11 1223344555665555554 3322 223566666662 3444 4899
Q ss_pred ceeeecCCCc
Q 017202 331 NYGLFQPDGT 340 (375)
Q Consensus 331 ~wGlf~~d~~ 340 (375)
.|||++.|.+
T Consensus 435 RfGLv~VD~~ 444 (467)
T TIGR01233 435 RYGLFYVDFD 444 (467)
T ss_pred ccceEEECCC
Confidence 9999999865
No 56
>cd01543 PBP1_XylR Ligand-binding domain of DNA transcription repressor specific for xylose (XylR). Ligand-binding domain of DNA transcription repressor specific for xylose (XylR), a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of XylR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=28.96 E-value=3e+02 Score=25.15 Aligned_cols=127 Identities=14% Similarity=0.131 Sum_probs=59.1
Q ss_pred HHHHHHHhcCCCCEEEEccCC---------hHHHHHHhhCCCeEEE--EeccccccccC-CHHHHHHHHHhcccccCCCc
Q 017202 44 DKVVDLLSSLKITKSRIYDTN---------PQVLTAFANSNIELIV--TVENQMLAVLV-DPQQALQWVSTHIKPYFPAT 111 (375)
Q Consensus 44 ~~v~~~lk~~~~~~VRlY~~d---------~~vL~A~~~~gikV~l--GV~n~~l~~la-~~~~A~~wv~~~v~~~~~~~ 111 (375)
..+.+.|.++|.++|=+.+.. ....++++..|+++.. ..+.....+.. ....+.+|++++ +
T Consensus 98 ~~~~~~l~~~g~~~i~~i~~~~~~~~~~R~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-----~-- 170 (265)
T cd01543 98 RMAAEHFLERGFRHFAFYGLPGARWSDEREEAFRQLVAEAGYECSFFYRGLSTDAQSWEEEQEELAQWLQSL-----P-- 170 (265)
T ss_pred HHHHHHHHHCCCcEEEEEcCCCCHHHHHHHHHHHHHHHHcCCccccccCccccccccHHHHHHHHHHHHhcC-----C--
Confidence 344565656677766555432 1234567778887621 11111111111 133455665532 1
Q ss_pred eEEEEEeccccccCCCchhHHhHHHHHHHHHHHHHhcCC--CCceeEecccccccccccCCCCCCccchhhHHHHHHHHH
Q 017202 112 KITGIAVGNEVFTDDDTSLIQNLVPATVSIHGALVQLGL--DKYIQVSTPNSLAVLEESYPPSAGSFKTEVAGIMSQYLQ 189 (375)
Q Consensus 112 ~I~~I~VGNE~l~~~~~~~~~~Lv~am~~v~~aL~~~gl--~~~IkVsT~~~~~v~~~~~pPS~g~F~~~~~~~l~~~~d 189 (375)
.+++|...|+.+.. -+ .++|++.|+ .++|.|.+-+....+..-..|.......+...+-..+++
T Consensus 171 ~~~ai~~~~d~~a~-------g~-------~~~l~~~g~~vp~di~vigfd~~~~~~~~~~~~ltti~~~~~~~g~~a~~ 236 (265)
T cd01543 171 KPVGIFACTDARAR-------QL-------LEACRRAGIAVPEEVAVLGVDNDELICELSRPPLSSVEQNAERIGYEAAK 236 (265)
T ss_pred CCcEEEecChHHHH-------HH-------HHHHHHhCCCCCCceEEEeeCCchhhhccCCCCCceeecCHHHHHHHHHH
Confidence 24566666655321 12 234455565 456777666654332222234444455444334444555
Q ss_pred Hh
Q 017202 190 FL 191 (375)
Q Consensus 190 fL 191 (375)
.|
T Consensus 237 ~l 238 (265)
T cd01543 237 LL 238 (265)
T ss_pred HH
Confidence 43
No 57
>smart00636 Glyco_18 Glycosyl hydrolase family 18.
Probab=28.73 E-value=1.2e+02 Score=29.48 Aligned_cols=79 Identities=14% Similarity=0.242 Sum_probs=40.0
Q ss_pred HHHHhh--CCCeEEEEeccc----cccccC-CHHHHHHHHHhcccccCCCceEEEEEeccccccCCCchhHHhHHHHHHH
Q 017202 68 LTAFAN--SNIELIVTVENQ----MLAVLV-DPQQALQWVSTHIKPYFPATKITGIAVGNEVFTDDDTSLIQNLVPATVS 140 (375)
Q Consensus 68 L~A~~~--~gikV~lGV~n~----~l~~la-~~~~A~~wv~~~v~~~~~~~~I~~I~VGNE~l~~~~~~~~~~Lv~am~~ 140 (375)
+.++++ .++||++.|... ....+. ++...++.+ ++|..+...-.+.+|-+==|..... ......++..|++
T Consensus 57 ~~~l~~~~~~~kvl~svgg~~~s~~f~~~~~~~~~r~~fi-~~i~~~~~~~~~DGidiDwE~~~~~-~~d~~~~~~ll~~ 134 (334)
T smart00636 57 LKALKKKNPGLKVLLSIGGWTESDNFSSMLSDPASRKKFI-DSIVSFLKKYGFDGIDIDWEYPGAR-GDDRENYTALLKE 134 (334)
T ss_pred HHHHHHhCCCCEEEEEEeCCCCCcchhHHHCCHHHHHHHH-HHHHHHHHHcCCCeEEECCcCCCCC-ccHHHHHHHHHHH
Confidence 455555 489999988752 222233 432222222 2222211111344555543443221 0124578889999
Q ss_pred HHHHHHhc
Q 017202 141 IHGALVQL 148 (375)
Q Consensus 141 v~~aL~~~ 148 (375)
+|+.|.+.
T Consensus 135 lr~~l~~~ 142 (334)
T smart00636 135 LREALDKE 142 (334)
T ss_pred HHHHHHHh
Confidence 99999764
No 58
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=28.55 E-value=1.3e+02 Score=25.98 Aligned_cols=43 Identities=16% Similarity=0.298 Sum_probs=31.9
Q ss_pred CHHHHHHHHhcCCCCEEEEccC---------------------C--hHHHHHHhhCCCeEEEEecc
Q 017202 42 PPDKVVDLLSSLKITKSRIYDT---------------------N--PQVLTAFANSNIELIVTVEN 84 (375)
Q Consensus 42 s~~~v~~~lk~~~~~~VRlY~~---------------------d--~~vL~A~~~~gikV~lGV~n 84 (375)
+++++++.||..+++.|-+|.- | .++++|+.+.||+|++-+-.
T Consensus 1 D~~~~~~~lk~~~v~si~i~a~~h~g~ayYPt~~~~~hp~L~~Dllge~v~a~h~~Girv~ay~~~ 66 (132)
T PF14871_consen 1 DPEQFVDTLKEAHVNSITIFAKCHGGYAYYPTKVGPRHPGLKRDLLGEQVEACHERGIRVPAYFDF 66 (132)
T ss_pred CHHHHHHHHHHhCCCEEEEEcccccEEEEccCCCCcCCCCCCcCHHHHHHHHHHHCCCEEEEEEee
Confidence 3677788888877777777542 1 35788999999999986653
No 59
>COG1433 Uncharacterized conserved protein [Function unknown]
Probab=28.44 E-value=1.2e+02 Score=25.99 Aligned_cols=39 Identities=15% Similarity=0.269 Sum_probs=34.9
Q ss_pred HHHHHHhcCCCCEEEEccCChHHHHHHhhCCCeEEEEec
Q 017202 45 KVVDLLSSLKITKSRIYDTNPQVLTAFANSNIELIVTVE 83 (375)
Q Consensus 45 ~v~~~lk~~~~~~VRlY~~d~~vL~A~~~~gikV~lGV~ 83 (375)
.+.++|+.+|++.|=+...-+..+.+|++.||+|+.+-.
T Consensus 56 ~~a~~l~~~gvdvvi~~~iG~~a~~~l~~~GIkv~~~~~ 94 (121)
T COG1433 56 RIAELLVDEGVDVVIASNIGPNAYNALKAAGIKVYVAPG 94 (121)
T ss_pred HHHHHHHHcCCCEEEECccCHHHHHHHHHcCcEEEecCC
Confidence 578999999999998888889999999999999999866
No 60
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=28.25 E-value=7.1e+02 Score=26.08 Aligned_cols=92 Identities=14% Similarity=0.178 Sum_probs=50.2
Q ss_pred CHHHHHHHH----hcCCCCEEEEccCC--------hHHHHHHhhCC-CeEEEEeccccccccC-CHHHHHHHHHhccccc
Q 017202 42 PPDKVVDLL----SSLKITKSRIYDTN--------PQVLTAFANSN-IELIVTVENQMLAVLV-DPQQALQWVSTHIKPY 107 (375)
Q Consensus 42 s~~~v~~~l----k~~~~~~VRlY~~d--------~~vL~A~~~~g-ikV~lGV~n~~l~~la-~~~~A~~wv~~~v~~~ 107 (375)
++++|++.+ +..++..+-+.|-+ .++++++.+.| +++..++... ...+. ++.....+ ++
T Consensus 223 s~e~Vv~Ei~~l~~~~gv~~~~~~Dd~f~~~~~~~~~l~~~l~~~~~l~i~w~~~~r-~~~i~~d~ell~~l-~~----- 295 (497)
T TIGR02026 223 DPKKFVDEIEWLVRTHGVGFFILADEEPTINRKKFQEFCEEIIARNPISVTWGINTR-VTDIVRDADILHLY-RR----- 295 (497)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEEecccccCHHHHHHHHHHHHhcCCCCeEEEEecc-cccccCCHHHHHHH-HH-----
Confidence 677776544 45788888877654 24667777776 7665554432 11222 33333222 21
Q ss_pred CCCceEEEEEeccccccCC------CchhHHhHHHHHHHHHH
Q 017202 108 FPATKITGIAVGNEVFTDD------DTSLIQNLVPATVSIHG 143 (375)
Q Consensus 108 ~~~~~I~~I~VGNE~l~~~------~~~~~~~Lv~am~~v~~ 143 (375)
..+..|.+|=|..... ......+...+++.+|+
T Consensus 296 ---aG~~~v~iGiES~~~~~L~~~~K~~t~~~~~~ai~~l~~ 334 (497)
T TIGR02026 296 ---AGLVHISLGTEAAAQATLDHFRKGTTTSTNKEAIRLLRQ 334 (497)
T ss_pred ---hCCcEEEEccccCCHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 2466788888876431 11234556666655554
No 61
>PF01055 Glyco_hydro_31: Glycosyl hydrolases family 31 ; InterPro: IPR000322 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 31 GH31 from CAZY comprises enzymes with several known activities; alpha-glucosidase (3.2.1.20 from EC), alpha-galactosidase (3.2.1.22 from EC); glucoamylase (3.2.1.3 from EC), sucrase-isomaltase (3.2.1.48 from EC); isomaltase (3.2.1.10 from EC); alpha-xylosidase (3.2.1 from EC); alpha-glucan lyase (4.2.2.13 from EC). Glycoside hydrolase family 31 groups a number of glycosyl hydrolases on the basis of sequence similarities [, , ] An aspartic acid has been implicated [] in the catalytic activity of sucrase, isomaltase, and lysosomal alpha-glucosidase.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3L4U_A 3L4X_A 3L4W_A 3L4V_A 3CTT_A 2QMJ_A 2QLY_A 3L4Z_A 3L4Y_A 3L4T_A ....
Probab=27.92 E-value=2.7e+02 Score=28.35 Aligned_cols=135 Identities=13% Similarity=0.154 Sum_probs=71.5
Q ss_pred HHhHHHHHHHHHHHHHhcCCCCceeEecccccccccccCCCCCCccchh--hHHHHHHHHHHhhhCCCCeeeeccccccc
Q 017202 131 IQNLVPATVSIHGALVQLGLDKYIQVSTPNSLAVLEESYPPSAGSFKTE--VAGIMSQYLQFLSSTKAPFWINAYTYFAY 208 (375)
Q Consensus 131 ~~~Lv~am~~v~~aL~~~gl~~~IkVsT~~~~~v~~~~~pPS~g~F~~~--~~~~l~~~~dfL~~~~sp~~vNiyPyf~~ 208 (375)
..++...+++.|+. +|++.+-..-.-|...+ +.|.-+ .=+-++.+++.|.+.|--++++++|+...
T Consensus 42 ~~~v~~~i~~~~~~--------~iP~d~~~iD~~~~~~~----~~f~~d~~~FPd~~~~~~~l~~~G~~~~~~~~P~v~~ 109 (441)
T PF01055_consen 42 QDEVREVIDRYRSN--------GIPLDVIWIDDDYQDGY----GDFTWDPERFPDPKQMIDELHDQGIKVVLWVHPFVSN 109 (441)
T ss_dssp HHHHHHHHHHHHHT--------T--EEEEEE-GGGSBTT----BTT-B-TTTTTTHHHHHHHHHHTT-EEEEEEESEEET
T ss_pred HHHHHHHHHHHHHc--------CCCccceeccccccccc----cccccccccccchHHHHHhHhhCCcEEEEEeecccCC
Confidence 45666666666653 36666654221222211 233211 11346788999999999999999998776
Q ss_pred cCCCCccCccccccCCCCCcccCCCCcccchHHHHHHHHHHHHHHHcCC----CCceEEEeeccCCCCCCCCCCCCCHHH
Q 017202 209 KDAPNRISLDYALFNPNSGMVDPYTKLHYDNMLYAQVDAAIFAMARLGY----NGIEVRVSETGWPSKGDPNEVGATVVN 284 (375)
Q Consensus 209 ~~~~~~i~l~~a~f~~~~~~~d~~~~~~y~n~fda~~dav~~al~~~g~----~~~~vvItETGWPs~G~~~~~~As~~n 284 (375)
... .|. .|+... ..|+ ++-...+++. ||-.+.- ..-+-.+
T Consensus 110 ~~~------~~~-------------------~~~~~~--------~~~~~v~~~~g~~~~~~~-w~g~~~~--~Dftnp~ 153 (441)
T PF01055_consen 110 DSP------DYE-------------------NYDEAK--------EKGYLVKNPDGSPYIGRV-WPGKGGF--IDFTNPE 153 (441)
T ss_dssp TTT------B-H-------------------HHHHHH--------HTT-BEBCTTSSB-EEEE-TTEEEEE--B-TTSHH
T ss_pred CCC------cch-------------------hhhhHh--------hcCceeecccCCcccccc-cCCcccc--cCCCChh
Confidence 532 111 122211 1121 2235677777 8844331 1234455
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCCCcccEEEEEeecCC
Q 017202 285 AATYNKNLLRRQMANEGTPLRPNMRLEVYLFALFNED 321 (375)
Q Consensus 285 a~~y~~~~i~~~~~~~Gtp~rp~~~i~~y~F~~fDe~ 321 (375)
++.++++.++.+... .+++.||..+=+..
T Consensus 154 a~~w~~~~~~~~~~~--------~Gvdg~w~D~~E~~ 182 (441)
T PF01055_consen 154 ARDWWKEQLKELLDD--------YGVDGWWLDFGEPS 182 (441)
T ss_dssp HHHHHHHHHHHHHTT--------ST-SEEEEESTTTB
T ss_pred HHHHHHHHHHHHHhc--------cCCceEEeecCCcc
Confidence 888888888887741 27899998874433
No 62
>PF14488 DUF4434: Domain of unknown function (DUF4434)
Probab=27.79 E-value=53 Score=29.45 Aligned_cols=20 Identities=15% Similarity=0.184 Sum_probs=17.8
Q ss_pred HHHHHHhhCCCeEEEEeccc
Q 017202 66 QVLTAFANSNIELIVTVENQ 85 (375)
Q Consensus 66 ~vL~A~~~~gikV~lGV~n~ 85 (375)
.+|+++.+.||||++|++.+
T Consensus 69 ~~L~~A~~~Gmkv~~Gl~~~ 88 (166)
T PF14488_consen 69 MILDAADKYGMKVFVGLYFD 88 (166)
T ss_pred HHHHHHHHcCCEEEEeCCCC
Confidence 58899999999999999954
No 63
>PRK09593 arb 6-phospho-beta-glucosidase; Reviewed
Probab=27.57 E-value=1.6e+02 Score=30.95 Aligned_cols=74 Identities=15% Similarity=0.187 Sum_probs=44.1
Q ss_pred ceEEEeeccCCCCCCCC--CC---CCCHHHHHHHHHHHHHHHHhcCCCCCCCCCcccEEEEEeecC-CCCCCCCCCCcee
Q 017202 260 IEVRVSETGWPSKGDPN--EV---GATVVNAATYNKNLLRRQMANEGTPLRPNMRLEVYLFALFNE-DMKPGPTSERNYG 333 (375)
Q Consensus 260 ~~vvItETGWPs~G~~~--~~---~As~~na~~y~~~~i~~~~~~~Gtp~rp~~~i~~y~F~~fDe-~wK~g~~~E~~wG 333 (375)
+||+|||-|........ +. .--.+--+.+++.+.+.+. ..|-+ -.-||.-++.|- .|..| +.++.||
T Consensus 369 ~Pi~ItENG~~~~d~~~~~g~i~D~~Ri~yl~~hl~~~~~Ai~-~dGv~-----v~GY~~WSl~Dn~EW~~G-~y~~RfG 441 (478)
T PRK09593 369 KPMFIVENGLGAVDKPDENGYVEDDYRIDYLAAHIKAMRDAIN-EDGVE-----LLGYTTWGCIDLVSAGTG-EMKKRYG 441 (478)
T ss_pred CCEEEEcCCCCCCCCCCCCCccCCHHHHHHHHHHHHHHHHHHH-HcCCC-----EEEEeeccchHhhcccCC-CccCeec
Confidence 58999999998654321 11 1123444555665555552 13422 234777777773 45443 3789999
Q ss_pred eecCCCc
Q 017202 334 LFQPDGT 340 (375)
Q Consensus 334 lf~~d~~ 340 (375)
|++.|..
T Consensus 442 l~~VD~~ 448 (478)
T PRK09593 442 FIYVDRD 448 (478)
T ss_pred eEEECCC
Confidence 9999764
No 64
>PF02811 PHP: PHP domain; InterPro: IPR004013 The PHP (Polymerase and Histidinol Phosphatase) domain is a putative phosphoesterase domain. This family is often associated with an N-terminal region IPR003141 from INTERPRO.; GO: 0003824 catalytic activity; PDB: 2WJE_A 3QY8_A 2WJD_A 2WJF_A 1PB0_B 1M68_A 1M65_A 3E38_B 2W9M_A 3E0F_A ....
Probab=27.54 E-value=1.2e+02 Score=25.99 Aligned_cols=45 Identities=22% Similarity=0.285 Sum_probs=36.5
Q ss_pred CCCHHHHHHHHhcCCCCEEEEccCC-----hHHHHHHhhCCCeEEEEecc
Q 017202 40 LPPPDKVVDLLSSLKITKSRIYDTN-----PQVLTAFANSNIELIVTVEN 84 (375)
Q Consensus 40 ~ps~~~v~~~lk~~~~~~VRlY~~d-----~~vL~A~~~~gikV~lGV~n 84 (375)
..+++++++..++.|++.|=+-|-+ +.-.+.++..||++++|+-.
T Consensus 15 ~~~~~e~v~~A~~~Gl~~i~iTDH~~~~~~~~~~~~~~~~~i~vi~G~E~ 64 (175)
T PF02811_consen 15 KDSPEEYVEQAKEKGLDAIAITDHNNFAGYPDFYKEAKKKGIKVIPGVEI 64 (175)
T ss_dssp SSSHHHHHHHHHHTTESEEEEEEETTTTTHHHHHHHHHHTTSEEEEEEEE
T ss_pred cCCHHHHHHHHHHcCCCEEEEcCCcccccchHHHHHHHhcCCceEEeEee
Confidence 3488999999999999998887654 34566777799999999875
No 65
>PRK09852 cryptic 6-phospho-beta-glucosidase; Provisional
Probab=27.54 E-value=1.5e+02 Score=31.16 Aligned_cols=74 Identities=12% Similarity=0.139 Sum_probs=43.3
Q ss_pred CceEEEeeccCCCCCCCC--CCC---CCHHHHHHHHHHHHHHHHhcCCCCCCCCCcccEEEEEeecC-CCCCCCCCCCce
Q 017202 259 GIEVRVSETGWPSKGDPN--EVG---ATVVNAATYNKNLLRRQMANEGTPLRPNMRLEVYLFALFNE-DMKPGPTSERNY 332 (375)
Q Consensus 259 ~~~vvItETGWPs~G~~~--~~~---As~~na~~y~~~~i~~~~~~~Gtp~rp~~~i~~y~F~~fDe-~wK~g~~~E~~w 332 (375)
++||+|||-|........ +.. --..--+.+++.+.+.+. .|-+ -.-||.-++.|- .|..| +..+.|
T Consensus 365 ~~Pi~ItENG~~~~d~~~~~g~i~D~~Ri~Yl~~hl~~~~~Ai~--dGv~-----V~GY~~WSl~Dn~Ew~~G-~y~~Rf 436 (474)
T PRK09852 365 QKPLFLVENGLGAKDEIAANGEINDDYRISYLREHIRAMGEAIA--DGIP-----LMGYTTWGCIDLVSASTG-EMSKRY 436 (474)
T ss_pred CCCEEEeCCCCCCCCCcCCCCccCCHHHHHHHHHHHHHHHHHHH--CCCC-----EEEEEeecccccccccCC-Ccccee
Confidence 357999999998554311 111 123334555555555553 3432 234777777773 34443 278999
Q ss_pred eeecCCCc
Q 017202 333 GLFQPDGT 340 (375)
Q Consensus 333 Glf~~d~~ 340 (375)
||++.|.+
T Consensus 437 GLv~VD~~ 444 (474)
T PRK09852 437 GFVYVDRD 444 (474)
T ss_pred eeEEECCC
Confidence 99998754
No 66
>PRK09318 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein; Provisional
Probab=27.42 E-value=85 Score=32.24 Aligned_cols=37 Identities=32% Similarity=0.503 Sum_probs=32.4
Q ss_pred HHHHhcCCCCEEEEccCChHHHHHHhhCCCeEEEEec
Q 017202 47 VDLLSSLKITKSRIYDTNPQVLTAFANSNIELIVTVE 83 (375)
Q Consensus 47 ~~~lk~~~~~~VRlY~~d~~vL~A~~~~gikV~lGV~ 83 (375)
.++|+..|+++||+...+|.=+.++.+.||+|.=-++
T Consensus 320 AqIL~dLGV~~irLLTNnp~K~~~L~~~GieV~~~vp 356 (387)
T PRK09318 320 FQILKALGIEKVRLLTNNPRKTKALEKYGIEVVETVP 356 (387)
T ss_pred HHHHHHcCCCEEEECCCCHHHHHHHHhCCCEEEEEec
Confidence 5788999999999999999888899999999984444
No 67
>PRK15014 6-phospho-beta-glucosidase BglA; Provisional
Probab=27.00 E-value=1.2e+02 Score=31.84 Aligned_cols=75 Identities=8% Similarity=0.138 Sum_probs=43.8
Q ss_pred CceEEEeeccCCCCCCC--CCC---CCCHHHHHHHHHHHHHHHHhcCCCCCCCCCcccEEEEEeecC-CCCCCCCCCCce
Q 017202 259 GIEVRVSETGWPSKGDP--NEV---GATVVNAATYNKNLLRRQMANEGTPLRPNMRLEVYLFALFNE-DMKPGPTSERNY 332 (375)
Q Consensus 259 ~~~vvItETGWPs~G~~--~~~---~As~~na~~y~~~~i~~~~~~~Gtp~rp~~~i~~y~F~~fDe-~wK~g~~~E~~w 332 (375)
++||+|||-|....... .+. .--.+--+.+++.+.+.+. ..|-+ -.-||.-++.|- .|..| +.++.|
T Consensus 368 ~~Pi~ItENG~~~~d~~~~~g~i~D~~Ri~Yl~~hl~~l~~Ai~-~dGv~-----v~GY~~WSl~DnfEw~~G-~y~~Rf 440 (477)
T PRK15014 368 QKPLFIVENGFGAYDKVEEDGSINDDYRIDYLRAHIEEMKKAVT-YDGVD-----LMGYTPWGCIDCVSFTTG-QYSKRY 440 (477)
T ss_pred CCCEEEeCCCCCCCCCcCcCCccCCHHHHHHHHHHHHHHHHHHH-HcCCC-----EEEEeeccchhhhcccCC-CccCcc
Confidence 35899999999865431 111 1123344555555555552 12322 234777777773 45554 388999
Q ss_pred eeecCCCc
Q 017202 333 GLFQPDGT 340 (375)
Q Consensus 333 Glf~~d~~ 340 (375)
||++.|.+
T Consensus 441 Gl~~VD~~ 448 (477)
T PRK15014 441 GFIYVNKH 448 (477)
T ss_pred ceEEECCC
Confidence 99988654
No 68
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=26.88 E-value=1.4e+02 Score=27.99 Aligned_cols=62 Identities=19% Similarity=0.349 Sum_probs=40.1
Q ss_pred CEEEEccCC-----hHHHHHHhhCCCeEEEEeccccccccCCHHHHHHHHHhcccccCCCceEEEEEecccc
Q 017202 56 TKSRIYDTN-----PQVLTAFANSNIELIVTVENQMLAVLVDPQQALQWVSTHIKPYFPATKITGIAVGNEV 122 (375)
Q Consensus 56 ~~VRlY~~d-----~~vL~A~~~~gikV~lGV~n~~l~~la~~~~A~~wv~~~v~~~~~~~~I~~I~VGNE~ 122 (375)
-.+++||+- ..+..+....-+.++|..-.....++. ....|++ +|+.+.++ .+.-|.|||-.
T Consensus 61 i~lQiWDtaGQerf~ti~~sYyrgA~gi~LvyDitne~Sfe---ni~~W~~-~I~e~a~~-~v~~~LvGNK~ 127 (207)
T KOG0078|consen 61 IKLQIWDTAGQERFRTITTAYYRGAMGILLVYDITNEKSFE---NIRNWIK-NIDEHASD-DVVKILVGNKC 127 (207)
T ss_pred EEEEEEEcccchhHHHHHHHHHhhcCeeEEEEEccchHHHH---HHHHHHH-HHHhhCCC-CCcEEEeeccc
Confidence 467788875 346777666666777765544444443 3345764 46676654 58889999987
No 69
>PRK09314 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein; Provisional
Probab=26.84 E-value=82 Score=31.77 Aligned_cols=34 Identities=9% Similarity=0.265 Sum_probs=30.4
Q ss_pred HHHHHhcCCCCEEEEccCC-hHHHHHHhhCCCeEE
Q 017202 46 VVDLLSSLKITKSRIYDTN-PQVLTAFANSNIELI 79 (375)
Q Consensus 46 v~~~lk~~~~~~VRlY~~d-~~vL~A~~~~gikV~ 79 (375)
-.++|+..|+++||+...+ |.-+.++.+.||+|.
T Consensus 300 gaqIL~dLGi~~irLlTnn~p~K~~~L~~~GieV~ 334 (339)
T PRK09314 300 GAQILKYLGIKDIKLLSSSEDKEYVGLSGFGLNIV 334 (339)
T ss_pred HHHHHHHCCCCEEEECCCCChhhhhhHhhCCcEEE
Confidence 3678999999999999999 888889999999986
No 70
>TIGR01579 MiaB-like-C MiaB-like tRNA modifying enzyme. This clade is a member of a subfamily (TIGR00089) and spans low GC Gram positive bacteria, alpha and epsilon proteobacteria, Campylobacter, Porphyromonas, Aquifex, Thermotoga, Chlamydia, Treponema and Fusobacterium.
Probab=26.53 E-value=6.9e+02 Score=25.33 Aligned_cols=59 Identities=10% Similarity=0.177 Sum_probs=33.5
Q ss_pred HHhHHHHHHHHHHHHHhcCCCCceeEecccccccccccCCCCCCccchhhHHHHHHHHHHhhhCCCCeeeeccccccc
Q 017202 131 IQNLVPATVSIHGALVQLGLDKYIQVSTPNSLAVLEESYPPSAGSFKTEVAGIMSQYLQFLSSTKAPFWINAYTYFAY 208 (375)
Q Consensus 131 ~~~Lv~am~~v~~aL~~~gl~~~IkVsT~~~~~v~~~~~pPS~g~F~~~~~~~l~~~~dfL~~~~sp~~vNiyPyf~~ 208 (375)
..+...+++.+|+.. .| +.+++..-+ .+| |. -.+.+...++|+.+.+ +-.+++|||--+
T Consensus 272 ~~~~~~~v~~l~~~~--~g----i~i~~~~Iv-----G~P---gE----T~ed~~~tl~~i~~~~-~~~~~~~~~sp~ 330 (414)
T TIGR01579 272 RDDFLKLVNKLRSVR--PD----YAFGTDIIV-----GFP---GE----SEEDFQETLRMVKEIE-FSHLHIFPYSAR 330 (414)
T ss_pred HHHHHHHHHHHHHhC--CC----CeeeeeEEE-----ECC---CC----CHHHHHHHHHHHHhCC-CCEEEeeecCCC
Confidence 566777777777642 22 445543211 344 11 1245567889988876 345677776544
No 71
>PRK08815 GTP cyclohydrolase; Provisional
Probab=26.21 E-value=92 Score=31.86 Aligned_cols=37 Identities=27% Similarity=0.422 Sum_probs=31.9
Q ss_pred HHHHhcCCCCEEEEccCChHHHHHHhhCCCeEEEEec
Q 017202 47 VDLLSSLKITKSRIYDTNPQVLTAFANSNIELIVTVE 83 (375)
Q Consensus 47 ~~~lk~~~~~~VRlY~~d~~vL~A~~~~gikV~lGV~ 83 (375)
.++|+..|+++||+...++.=+.++.+.||+|.=-++
T Consensus 305 AQIL~dLGV~kirLLTnnp~K~~~L~g~gieVv~~vp 341 (375)
T PRK08815 305 VAMLRGLGITRVRLLTNNPTKAERLRAAGIEVEDRIR 341 (375)
T ss_pred HHHHHHcCCCeEEECCCCHHHHHHHHhCCCEEEEEec
Confidence 5788999999999999999888899999999974444
No 72
>PRK14334 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=26.01 E-value=6.2e+02 Score=26.05 Aligned_cols=57 Identities=16% Similarity=0.162 Sum_probs=31.1
Q ss_pred HHhHHHHHHHHHHHHHhcCCCCceeEecccccccccccCCCCCCccchhhHHHHHHHHHHhhhCCCCeeeeccccc
Q 017202 131 IQNLVPATVSIHGALVQLGLDKYIQVSTPNSLAVLEESYPPSAGSFKTEVAGIMSQYLQFLSSTKAPFWINAYTYF 206 (375)
Q Consensus 131 ~~~Lv~am~~v~~aL~~~gl~~~IkVsT~~~~~v~~~~~pPS~g~F~~~~~~~l~~~~dfL~~~~sp~~vNiyPyf 206 (375)
..+.+.+++.+|++. . .+.++|.. +. .+| |.= .+.+...++|+.+.+ +-.+++|+|-
T Consensus 271 ~~~~~~~v~~lr~~~----~--~i~i~~d~----Iv-G~P---gEt----~ed~~~tl~~i~~l~-~~~i~~f~ys 327 (440)
T PRK14334 271 REKYLERIAEIREAL----P--DVVLSTDI----IV-GFP---GET----EEDFQETLSLYDEVG-YDSAYMFIYS 327 (440)
T ss_pred HHHHHHHHHHHHHhC----C--CcEEEEeE----EE-ECC---CCC----HHHHHHHHHHHHhcC-CCEeeeeEee
Confidence 566777777776653 2 24455432 21 244 111 234567788888765 3456666653
No 73
>PRK09311 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein; Provisional
Probab=25.98 E-value=92 Score=32.12 Aligned_cols=37 Identities=16% Similarity=0.369 Sum_probs=31.9
Q ss_pred HHHHhcCCCCEEEEccCChHHHHHHhhCCCeEEEEec
Q 017202 47 VDLLSSLKITKSRIYDTNPQVLTAFANSNIELIVTVE 83 (375)
Q Consensus 47 ~~~lk~~~~~~VRlY~~d~~vL~A~~~~gikV~lGV~ 83 (375)
.++|+..|+++||+...+|.=+.++.+.||+|.=-++
T Consensus 339 aqIL~~LGv~~irLLTnnp~K~~~L~~~GieV~~~v~ 375 (402)
T PRK09311 339 AQILVDLGVRSMRLLTNNPRKIAGLQGYGLHVTERVP 375 (402)
T ss_pred HHHHHHcCCCEEEECCCCHHHHHHHhhCCCEEEEEec
Confidence 5788999999999999999888899999999973333
No 74
>PF00411 Ribosomal_S11: Ribosomal protein S11; InterPro: IPR001971 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein S11 [] plays an essential role in selecting the correct tRNA in protein biosynthesis. It is located on the large lobe of the small ribosomal subunit. On the basis of sequence similarities, S11 belongs to a family of bacterial, archaeal and eukaryotic ribosomal proteins [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2YKR_K 3U5C_O 3O2Z_H 3IZB_K 3U5G_O 3O30_H 1S1H_K 3BBN_K 2XZN_K 2XZM_K ....
Probab=25.93 E-value=1.3e+02 Score=25.01 Aligned_cols=36 Identities=19% Similarity=0.314 Sum_probs=27.1
Q ss_pred HHHHHHhcCCCCEEEEc--cCC---hHHHHHHhhCCCeEEE
Q 017202 45 KVVDLLSSLKITKSRIY--DTN---PQVLTAFANSNIELIV 80 (375)
Q Consensus 45 ~v~~~lk~~~~~~VRlY--~~d---~~vL~A~~~~gikV~l 80 (375)
.+.+.++..|++.|+++ +.. ..+++++..+|++|..
T Consensus 51 ~~~~~~~~~gi~~v~v~ikG~g~gr~~~lk~l~~~gl~I~~ 91 (110)
T PF00411_consen 51 KIAKKAKELGIKTVRVKIKGFGPGREAALKALKKSGLKIVS 91 (110)
T ss_dssp HHHHHHHCTTEEEEEEEEESSSTTHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHcCCeEEEEEEcCCCccHHHHHHHHHhcCCEEEE
Confidence 44566677899988888 333 4699999999999763
No 75
>PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes. Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F ....
Probab=25.73 E-value=2.3e+02 Score=26.42 Aligned_cols=70 Identities=14% Similarity=0.227 Sum_probs=48.8
Q ss_pred CCHHHHHHHHhcCCCCEEEEccCC---------hHHHHHH-hhCCCeEEEEeccccccccCCHHHHHHHHHhcccccCCC
Q 017202 41 PPPDKVVDLLSSLKITKSRIYDTN---------PQVLTAF-ANSNIELIVTVENQMLAVLVDPQQALQWVSTHIKPYFPA 110 (375)
Q Consensus 41 ps~~~v~~~lk~~~~~~VRlY~~d---------~~vL~A~-~~~gikV~lGV~n~~l~~la~~~~A~~wv~~~v~~~~~~ 110 (375)
.+|-++++.+...+++.+=+-|.| .+++..+ +..+++|.+|-... +.+.++.|+...
T Consensus 29 ~dP~~~a~~~~~~g~~~l~ivDLdaa~~g~~~n~~~i~~i~~~~~~~i~vgGGIr------s~ed~~~ll~~G------- 95 (229)
T PF00977_consen 29 GDPVEVAKAFNEQGADELHIVDLDAAKEGRGSNLELIKEIAKETGIPIQVGGGIR------SIEDAERLLDAG------- 95 (229)
T ss_dssp CCHHHHHHHHHHTT-SEEEEEEHHHHCCTHHHHHHHHHHHHHHSSSEEEEESSE-------SHHHHHHHHHTT-------
T ss_pred cCHHHHHHHHHHcCCCEEEEEEccCcccCchhHHHHHHHHHhcCCccEEEeCccC------cHHHHHHHHHhC-------
Confidence 478889998888999999888765 1255444 45789999996532 345677776532
Q ss_pred ceEEEEEeccccccC
Q 017202 111 TKITGIAVGNEVFTD 125 (375)
Q Consensus 111 ~~I~~I~VGNE~l~~ 125 (375)
+..|++|.|.+.+
T Consensus 96 --a~~Vvigt~~~~~ 108 (229)
T PF00977_consen 96 --ADRVVIGTEALED 108 (229)
T ss_dssp ---SEEEESHHHHHC
T ss_pred --CCEEEeChHHhhc
Confidence 4479999999875
No 76
>PRK08091 ribulose-phosphate 3-epimerase; Validated
Probab=25.59 E-value=4.2e+02 Score=25.14 Aligned_cols=101 Identities=9% Similarity=0.086 Sum_probs=57.0
Q ss_pred CHHHHHHHHhcCCCCEEEEc-cCC---hHHHHHHhhCCCeEEEEeccccccccCCHHHHHHHHHhcccccCCC-ceEEEE
Q 017202 42 PPDKVVDLLSSLKITKSRIY-DTN---PQVLTAFANSNIELIVTVENQMLAVLVDPQQALQWVSTHIKPYFPA-TKITGI 116 (375)
Q Consensus 42 s~~~v~~~lk~~~~~~VRlY-~~d---~~vL~A~~~~gikV~lGV~n~~l~~la~~~~A~~wv~~~v~~~~~~-~~I~~I 116 (375)
.|++.++.+...|.+.|=+- ++. ..+|+.+++.|+.|-.|+-...-.. .+.. .+|.+. +.|.-.
T Consensus 79 ~P~~~i~~~~~aGad~It~H~Ea~~~~~~~l~~Ik~~g~~~kaGlalnP~Tp---~~~i--------~~~l~~vD~VLiM 147 (228)
T PRK08091 79 DQFEVAKACVAAGADIVTLQVEQTHDLALTIEWLAKQKTTVLIGLCLCPETP---ISLL--------EPYLDQIDLIQIL 147 (228)
T ss_pred CHHHHHHHHHHhCCCEEEEcccCcccHHHHHHHHHHCCCCceEEEEECCCCC---HHHH--------HHHHhhcCEEEEE
Confidence 46677777766677766443 221 2578888889985555665432121 1111 122221 234434
Q ss_pred EeccccccCCCchhHHhHHHHHHHHHHHHHhcCCCCceeE
Q 017202 117 AVGNEVFTDDDTSLIQNLVPATVSIHGALVQLGLDKYIQV 156 (375)
Q Consensus 117 ~VGNE~l~~~~~~~~~~Lv~am~~v~~aL~~~gl~~~IkV 156 (375)
+| |.=.++ +.+.+..+..|+++|+.+...|++-.|-|
T Consensus 148 tV--~PGfgG-Q~f~~~~l~KI~~lr~~~~~~~~~~~IeV 184 (228)
T PRK08091 148 TL--DPRTGT-KAPSDLILDRVIQVENRLGNRRVEKLISI 184 (228)
T ss_pred EE--CCCCCC-ccccHHHHHHHHHHHHHHHhcCCCceEEE
Confidence 44 332222 34567899999999999998887533433
No 77
>PRK09319 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II/unknown domain fusion protein; Provisional
Probab=25.45 E-value=95 Score=33.41 Aligned_cols=37 Identities=22% Similarity=0.467 Sum_probs=32.8
Q ss_pred HHHHhcCCCCEEEEccCChHHHHHHhhCCCeEEEEec
Q 017202 47 VDLLSSLKITKSRIYDTNPQVLTAFANSNIELIVTVE 83 (375)
Q Consensus 47 ~~~lk~~~~~~VRlY~~d~~vL~A~~~~gikV~lGV~ 83 (375)
.++|+..|+++||+..-+|.=+.++.+.||+|.==++
T Consensus 343 AQIL~dLGI~kIrLLTNNP~Ki~~L~~~GIeVv~rvp 379 (555)
T PRK09319 343 AQILNDLGIKRLRLITNNPRKIAGLGGYGLEVVDRVP 379 (555)
T ss_pred HHHHHHcCCCEEEECCCCHHHHHHHHhCCCEEEEEec
Confidence 5789999999999999999999999999999884444
No 78
>PLN02831 Bifunctional GTP cyclohydrolase II/ 3,4-dihydroxy-2-butanone-4-phosphate synthase
Probab=25.12 E-value=94 Score=32.57 Aligned_cols=37 Identities=19% Similarity=0.366 Sum_probs=31.9
Q ss_pred HHHHhcCCCCEEEEccCChHHHHHHhhCCCeEEEEec
Q 017202 47 VDLLSSLKITKSRIYDTNPQVLTAFANSNIELIVTVE 83 (375)
Q Consensus 47 ~~~lk~~~~~~VRlY~~d~~vL~A~~~~gikV~lGV~ 83 (375)
.++|+..|+++||+..-+|.=+.++.+.||+|.=-++
T Consensus 373 AqIL~dLGI~~irLLTNNp~K~~~L~~~GieVve~vp 409 (450)
T PLN02831 373 AQILRDLGVRTMRLMTNNPAKYTGLKGYGLAVVGRVP 409 (450)
T ss_pred HHHHHHcCCCEEEECCCCHHHHHHHhhCCCEEEEEec
Confidence 5788999999999999999888899999999974343
No 79
>PF14606 Lipase_GDSL_3: GDSL-like Lipase/Acylhydrolase family; PDB: 3SKV_B.
Probab=24.75 E-value=4.8e+02 Score=23.81 Aligned_cols=52 Identities=10% Similarity=0.085 Sum_probs=29.7
Q ss_pred HHHHHHHHHHcCCCCceEEEeec-cCCCCCCCCC-CCCCHHHHHHHHHHHHHHHHh
Q 017202 245 VDAAIFAMARLGYNGIEVRVSET-GWPSKGDPNE-VGATVVNAATYNKNLLRRQMA 298 (375)
Q Consensus 245 ~dav~~al~~~g~~~~~vvItET-GWPs~G~~~~-~~As~~na~~y~~~~i~~~~~ 298 (375)
++.++..+. .++|++||++.|. ++|.. .... ...+.+..+..++..++.+++
T Consensus 80 ~~~fv~~iR-~~hP~tPIllv~~~~~~~~-~~~~~~~~~~~~~~~~~r~~v~~l~~ 133 (178)
T PF14606_consen 80 LDGFVKTIR-EAHPDTPILLVSPIPYPAG-YFDNSRGETVEEFREALREAVEQLRK 133 (178)
T ss_dssp HHHHHHHHH-TT-SSS-EEEEE----TTT-TS--TTS--HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-HhCCCCCEEEEecCCcccc-ccCchHHHHHHHHHHHHHHHHHHHHH
Confidence 333333443 4689999999994 44444 4332 457888888888888888864
No 80
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=24.67 E-value=5.7e+02 Score=23.77 Aligned_cols=88 Identities=9% Similarity=0.214 Sum_probs=53.1
Q ss_pred CHHHHHHHHhcCCCCEEEEccCC---hHHHHHHhh--CCCeEEEEeccccccccCCHHHHHHHHHhcccccCCCceEEEE
Q 017202 42 PPDKVVDLLSSLKITKSRIYDTN---PQVLTAFAN--SNIELIVTVENQMLAVLVDPQQALQWVSTHIKPYFPATKITGI 116 (375)
Q Consensus 42 s~~~v~~~lk~~~~~~VRlY~~d---~~vL~A~~~--~gikV~lGV~n~~l~~la~~~~A~~wv~~~v~~~~~~~~I~~I 116 (375)
+++|+.+.+ +.|.+.|++|-++ ++-++++++ .+++++ +...+ +...+.+|++. .+..+
T Consensus 118 T~~E~~~A~-~~Gad~vklFPa~~~G~~~ik~l~~~~p~ip~~---atGGI----~~~N~~~~l~a---------Ga~~v 180 (213)
T PRK06552 118 TVTEIVTAL-EAGSEIVKLFPGSTLGPSFIKAIKGPLPQVNVM---VTGGV----NLDNVKDWFAA---------GADAV 180 (213)
T ss_pred CHHHHHHHH-HcCCCEEEECCcccCCHHHHHHHhhhCCCCEEE---EECCC----CHHHHHHHHHC---------CCcEE
Confidence 788887765 4789999999655 566777765 336554 22222 35666777762 35678
Q ss_pred EeccccccCCCchhHHhHHHHHHHHHHHHH
Q 017202 117 AVGNEVFTDDDTSLIQNLVPATVSIHGALV 146 (375)
Q Consensus 117 ~VGNE~l~~~~~~~~~~Lv~am~~v~~aL~ 146 (375)
.||...+........+.+-...+++++.++
T Consensus 181 avgs~l~~~~~~~~~~~i~~~a~~~~~~~~ 210 (213)
T PRK06552 181 GIGGELNKLASQGDFDLITEKAKKYMSSLR 210 (213)
T ss_pred EEchHHhCccccCCHHHHHHHHHHHHHHHH
Confidence 888887643111113455555556555554
No 81
>COG3858 Predicted glycosyl hydrolase [General function prediction only]
Probab=24.59 E-value=75 Score=32.91 Aligned_cols=117 Identities=15% Similarity=0.125 Sum_probs=66.1
Q ss_pred ChHHHHHHhhCCCeEEEEecccc--ccccC--------CHHHHHHHHHhcccccCCCceEEEEEeccccccCCCchhHHh
Q 017202 64 NPQVLTAFANSNIELIVTVENQM--LAVLV--------DPQQALQWVSTHIKPYFPATKITGIAVGNEVFTDDDTSLIQN 133 (375)
Q Consensus 64 d~~vL~A~~~~gikV~lGV~n~~--l~~la--------~~~~A~~wv~~~v~~~~~~~~I~~I~VGNE~l~~~~~~~~~~ 133 (375)
+..++......+++.++++-|.. ..... +.+.+.+=+.+++..-.....++++.+.=|.+...| ...
T Consensus 149 ~~~~~~~~~~~~i~~~~~iSN~~~~~~~f~~ela~~lL~net~~~~~i~~ii~~l~~~Gyrgv~iDfE~v~~~D---R~~ 225 (423)
T COG3858 149 NENVIEIAQCRKIKPVPGISNGTRPGANFGGELAQLLLNNETAKNRLINNIITLLDARGYRGVNIDFENVGPGD---REL 225 (423)
T ss_pred CcchhhhhhhcccceeEEEecCCccccccchHHHHHHHhcHHHHHHHHHHHHHHHHhcCcccEEechhhCCHHH---HHH
Confidence 45688888889999999999876 22221 111222112222221112234777888888886543 456
Q ss_pred HHHHHHHHHHHHHhcCCCCceeEecccccccccccCCCCCCccchhhHHHHHHHHHH
Q 017202 134 LVPATVSIHGALVQLGLDKYIQVSTPNSLAVLEESYPPSAGSFKTEVAGIMSQYLQF 190 (375)
Q Consensus 134 Lv~am~~v~~aL~~~gl~~~IkVsT~~~~~v~~~~~pPS~g~F~~~~~~~l~~~~df 190 (375)
.--.||.+|.+|.+.|+ .++++..-..-...--++.+.|. ...+-.++||
T Consensus 226 yt~flR~~r~~l~~~G~----~~siAvaakt~~~~~G~W~~~~d---y~a~Gkiad~ 275 (423)
T COG3858 226 YTDFLRQVRDALHSGGY----TVSIAVAAKTSDLQVGSWHGAYD---YVALGKIADF 275 (423)
T ss_pred HHHHHHHHHHHhccCCe----EEEEEecCCCCCCcCccccchhh---hhhhceeeeE
Confidence 77789999999999886 34444432111000002233332 2456677888
No 82
>PF13670 PepSY_2: Peptidase propeptide and YPEB domain This Prosite motif covers only the active site. This is family M4 in the peptidase classification.
Probab=24.20 E-value=1.2e+02 Score=23.57 Aligned_cols=22 Identities=14% Similarity=0.072 Sum_probs=16.3
Q ss_pred CCHHHHHHHHhcCCCCEEEEccC
Q 017202 41 PPPDKVVDLLSSLKITKSRIYDT 63 (375)
Q Consensus 41 ps~~~v~~~lk~~~~~~VRlY~~ 63 (375)
-+.+++.+.++..|+ .||-...
T Consensus 29 ~~~~~~~~~l~~~G~-~v~~ve~ 50 (83)
T PF13670_consen 29 LSIEQAVAKLEAQGY-QVREVEF 50 (83)
T ss_pred CCHHHHHHHHHhcCC-ceEEEEE
Confidence 367888999988887 6665544
No 83
>TIGR03628 arch_S11P archaeal ribosomal protein S11P. This model describes exclusively the archaeal ribosomal protein S11P. It excludes homologous ribosomal proteins S14 from eukaryotes and S11 from bacteria.
Probab=24.08 E-value=1.7e+02 Score=24.82 Aligned_cols=36 Identities=14% Similarity=0.167 Sum_probs=26.9
Q ss_pred HHHHHHHhcCCCCEEEEc--c--------CC---hHHHHHHhhCCCeEE
Q 017202 44 DKVVDLLSSLKITKSRIY--D--------TN---PQVLTAFANSNIELI 79 (375)
Q Consensus 44 ~~v~~~lk~~~~~~VRlY--~--------~d---~~vL~A~~~~gikV~ 79 (375)
+++.+..+.+|++.|+++ + +. +.+|++++..||+|.
T Consensus 53 ~~~~~~~~~~Gi~~v~v~ikG~gg~~~~~~G~Gr~~air~l~~~glkI~ 101 (114)
T TIGR03628 53 GRAAEKAKERGITGLHIKVRAPGGNGQKSPGPGAQAAIRALARAGLRIG 101 (114)
T ss_pred HHHHHHHHHcCCcEEEEEEEecCCCCCCCCCCcHHHHHHHHHHCCCEEE
Confidence 445566677899887777 3 33 459999999999976
No 84
>PF15240 Pro-rich: Proline-rich
Probab=24.00 E-value=48 Score=30.41 Aligned_cols=17 Identities=18% Similarity=0.141 Sum_probs=11.8
Q ss_pred HHHHHHHHHhhhhcccc
Q 017202 9 ALIPFFLLLSLTFSDFG 25 (375)
Q Consensus 9 ~~~~~~~~~~~~~~~~~ 25 (375)
+.||.++||||+|+...
T Consensus 3 lVLLSvALLALSSAQ~~ 19 (179)
T PF15240_consen 3 LVLLSVALLALSSAQST 19 (179)
T ss_pred hHHHHHHHHHhhhcccc
Confidence 55677888888886543
No 85
>PRK13586 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=23.79 E-value=5.1e+02 Score=24.40 Aligned_cols=70 Identities=16% Similarity=0.155 Sum_probs=48.2
Q ss_pred CCHHHHHHHHhcCCCCEEEEccCC--------hHHHHHHhh-CCCeEEEEeccccccccCCHHHHHHHHHhcccccCCCc
Q 017202 41 PPPDKVVDLLSSLKITKSRIYDTN--------PQVLTAFAN-SNIELIVTVENQMLAVLVDPQQALQWVSTHIKPYFPAT 111 (375)
Q Consensus 41 ps~~~v~~~lk~~~~~~VRlY~~d--------~~vL~A~~~-~gikV~lGV~n~~l~~la~~~~A~~wv~~~v~~~~~~~ 111 (375)
.+|-++++.++..|++.+=+.|.| .++++.+.. .-.+|.+|=-. . +...++.++..
T Consensus 30 ~dP~~~a~~~~~~ga~~lhivDLd~a~~~~~n~~~i~~i~~~~~~~v~vGGGI---r---s~e~~~~~l~~--------- 94 (232)
T PRK13586 30 GNPIEIASKLYNEGYTRIHVVDLDAAEGVGNNEMYIKEISKIGFDWIQVGGGI---R---DIEKAKRLLSL--------- 94 (232)
T ss_pred CCHHHHHHHHHHCCCCEEEEEECCCcCCCcchHHHHHHHHhhCCCCEEEeCCc---C---CHHHHHHHHHC---------
Confidence 378889998988999999888876 246766665 43478876332 2 34456666652
Q ss_pred eEEEEEeccccccC
Q 017202 112 KITGIAVGNEVFTD 125 (375)
Q Consensus 112 ~I~~I~VGNE~l~~ 125 (375)
.+..|+||.+.+.+
T Consensus 95 Ga~kvvigt~a~~~ 108 (232)
T PRK13586 95 DVNALVFSTIVFTN 108 (232)
T ss_pred CCCEEEECchhhCC
Confidence 24457899999874
No 86
>CHL00041 rps11 ribosomal protein S11
Probab=23.47 E-value=1.8e+02 Score=24.55 Aligned_cols=35 Identities=11% Similarity=0.246 Sum_probs=26.1
Q ss_pred HHHHHHhcCCCCEEEEc--cCC---hHHHHHHhhCCCeEE
Q 017202 45 KVVDLLSSLKITKSRIY--DTN---PQVLTAFANSNIELI 79 (375)
Q Consensus 45 ~v~~~lk~~~~~~VRlY--~~d---~~vL~A~~~~gikV~ 79 (375)
++.+.++..|++.|+++ +.. ..+++++...|++|.
T Consensus 64 ~~~~~~~~~gi~~v~I~ikG~G~Gr~~~ir~l~~~glkI~ 103 (116)
T CHL00041 64 NAIRTVIDQGMKRAEVMIKGPGLGRDTALRAIRRSGLKLS 103 (116)
T ss_pred HHHHHHHHcCCcEEEEEEECCCCcHHHHHHHHHHCCCEEE
Confidence 44556667899888887 333 468999999999976
No 87
>cd02871 GH18_chitinase_D-like GH18 domain of Chitinase D (ChiD). ChiD, a chitinase found in Bacillus circulans, hydrolyzes the 1,4-beta-linkages of N-acetylglucosamine in chitin and chitodextrins. The domain architecture of ChiD includes a catalytic glycosyl hydrolase family 18 (GH18) domain, a chitin-binding domain, and a fibronectin type III domain. The chitin-binding and fibronectin type III domains are located either N-terminal or C-terminal to the catalytic domain. This family includes exochitinase Chi36 from Bacillus cereus.
Probab=23.36 E-value=2.5e+02 Score=27.48 Aligned_cols=79 Identities=15% Similarity=0.172 Sum_probs=39.1
Q ss_pred HHHHHhhCCCeEEEEeccccccc-cCCHHHHHHHHHhcccccCCCceEEEEEeccccccCC--CchhHHhHHHHHHHHHH
Q 017202 67 VLTAFANSNIELIVTVENQMLAV-LVDPQQALQWVSTHIKPYFPATKITGIAVGNEVFTDD--DTSLIQNLVPATVSIHG 143 (375)
Q Consensus 67 vL~A~~~~gikV~lGV~n~~l~~-la~~~~A~~wv~~~v~~~~~~~~I~~I~VGNE~l~~~--~~~~~~~Lv~am~~v~~ 143 (375)
-++.++..|+||+|.|.-..-.. +.+...+++ +.+++..+...-.+.+|=+==|.-... .......++..++++|+
T Consensus 65 ~i~~~q~~G~KVllSiGG~~~~~~~~~~~~~~~-fa~sl~~~~~~~g~DGiDiD~E~~~~~~~~~~~~~~~~~~lk~lr~ 143 (312)
T cd02871 65 DIKALQAKGKKVLISIGGANGHVDLNHTAQEDN-FVDSIVAIIKEYGFDGLDIDLESGSNPLNATPVITNLISALKQLKD 143 (312)
T ss_pred HHHHHHHCCCEEEEEEeCCCCccccCCHHHHHH-HHHHHHHHHHHhCCCeEEEecccCCccCCcHHHHHHHHHHHHHHHH
Confidence 34567778999999886432221 223322222 223332222111244444433432111 11134678899999988
Q ss_pred HHH
Q 017202 144 ALV 146 (375)
Q Consensus 144 aL~ 146 (375)
.+.
T Consensus 144 ~~~ 146 (312)
T cd02871 144 HYG 146 (312)
T ss_pred HcC
Confidence 774
No 88
>PRK14024 phosphoribosyl isomerase A; Provisional
Probab=23.36 E-value=5.1e+02 Score=24.29 Aligned_cols=69 Identities=9% Similarity=0.104 Sum_probs=48.3
Q ss_pred CHHHHHHHHhcCCCCEEEEccCC--------hHHHHHHh-hCCCeEEEEeccccccccCCHHHHHHHHHhcccccCCCce
Q 017202 42 PPDKVVDLLSSLKITKSRIYDTN--------PQVLTAFA-NSNIELIVTVENQMLAVLVDPQQALQWVSTHIKPYFPATK 112 (375)
Q Consensus 42 s~~~v~~~lk~~~~~~VRlY~~d--------~~vL~A~~-~~gikV~lGV~n~~l~~la~~~~A~~wv~~~v~~~~~~~~ 112 (375)
.|.++++.+.+.|++.+=+.|.| -++++.+. ..+++|++|=-. . +.+.++.++.. .
T Consensus 33 dp~~~a~~~~~~g~~~l~ivDLd~~~g~~~n~~~i~~i~~~~~~pv~vgGGi---r---s~edv~~~l~~---------G 97 (241)
T PRK14024 33 SPLDAALAWQRDGAEWIHLVDLDAAFGRGSNRELLAEVVGKLDVKVELSGGI---R---DDESLEAALAT---------G 97 (241)
T ss_pred CHHHHHHHHHHCCCCEEEEEeccccCCCCccHHHHHHHHHHcCCCEEEcCCC---C---CHHHHHHHHHC---------C
Confidence 78889998988999999999887 23666654 468899987443 2 23455555542 2
Q ss_pred EEEEEeccccccC
Q 017202 113 ITGIAVGNEVFTD 125 (375)
Q Consensus 113 I~~I~VGNE~l~~ 125 (375)
...+++|.+.+.+
T Consensus 98 a~kvviGs~~l~~ 110 (241)
T PRK14024 98 CARVNIGTAALEN 110 (241)
T ss_pred CCEEEECchHhCC
Confidence 3357889999864
No 89
>PF13377 Peripla_BP_3: Periplasmic binding protein-like domain; PDB: 3K9C_B 3BIL_B 3JVD_B 1ZAY_A 1VPW_A 1DBQ_A 2PUA_A 1QQA_A 1PNR_A 1JHZ_A ....
Probab=23.14 E-value=3.1e+02 Score=22.85 Aligned_cols=120 Identities=16% Similarity=0.179 Sum_probs=59.9
Q ss_pred HHHhcCCCCEEEEccCC----------hHHHHHHhhCCCeEEEEeccccccccCCHHHHHHHHHhcccccCCCceEEEEE
Q 017202 48 DLLSSLKITKSRIYDTN----------PQVLTAFANSNIELIVTVENQMLAVLVDPQQALQWVSTHIKPYFPATKITGIA 117 (375)
Q Consensus 48 ~~lk~~~~~~VRlY~~d----------~~vL~A~~~~gikV~lGV~n~~l~~la~~~~A~~wv~~~v~~~~~~~~I~~I~ 117 (375)
+-|.++|.++|-+-... .....++++.|++...-.................|+++. .|+ +|+
T Consensus 2 ~~L~~~G~r~i~~i~~~~~~~~~~~r~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~----~pd----aii 73 (160)
T PF13377_consen 2 DYLIERGHRRIAFIGGPPNSSVSRERLEGFREALKEHGIEFEELIFFSDDDSEDAREAQLLWLRRL----RPD----AII 73 (160)
T ss_dssp HHHHHTT-SSEEEEESSTTSHHHHHHHHHHHHHHHHTTSEEEGEEEEESSSHHHHHHHHHHHHHTC----SSS----EEE
T ss_pred hHHHHCCCCeEEEEecCCCChhHHHHHHHHHHHHHHCCCCCCeeEeecCCcchhHHHHHHHHHhcC----CCc----EEE
Confidence 34556677777776633 125678888999855433321111100112223466544 233 777
Q ss_pred eccccccCCCchhHHhHHHHHHHHHHHHHhcCC--CCceeEecccccccccccCCCCCCccchhhHHHHHHHHHH
Q 017202 118 VGNEVFTDDDTSLIQNLVPATVSIHGALVQLGL--DKYIQVSTPNSLAVLEESYPPSAGSFKTEVAGIMSQYLQF 190 (375)
Q Consensus 118 VGNE~l~~~~~~~~~~Lv~am~~v~~aL~~~gl--~~~IkVsT~~~~~v~~~~~pPS~g~F~~~~~~~l~~~~df 190 (375)
++|+.+. ..+ ..+|++.|+ .+++.|-+-+...... ...|....+..+...+-..+++.
T Consensus 74 ~~~~~~a-------~~~-------~~~l~~~g~~vP~di~vv~~~~~~~~~-~~~p~it~i~~~~~~~g~~a~~~ 133 (160)
T PF13377_consen 74 CSNDRLA-------LGV-------LRALRELGIRVPQDISVVSFDDSPLLE-FFSPPITTIDQDPREMGREAVEL 133 (160)
T ss_dssp ESSHHHH-------HHH-------HHHHHHTTSCTTTTSEEEEESSSGHHH-CSSSTSEEEEE-HHHHHHHHHHH
T ss_pred EcCHHHH-------HHH-------HHHHHHcCCcccccccEEEecCcHHHH-HHcCCCceecCCHHHHHHHHHHH
Confidence 7776642 222 244566666 4567776665443332 23345556665554444444454
No 90
>COG2113 ProX ABC-type proline/glycine betaine transport systems, periplasmic components [Amino acid transport and metabolism]
Probab=22.44 E-value=1.9e+02 Score=28.68 Aligned_cols=37 Identities=11% Similarity=0.211 Sum_probs=27.8
Q ss_pred HHHhcCCCCEEEEccCChH-HHHHHhhCCCeEEEEeccc
Q 017202 48 DLLSSLKITKSRIYDTNPQ-VLTAFANSNIELIVTVENQ 85 (375)
Q Consensus 48 ~~lk~~~~~~VRlY~~d~~-vL~A~~~~gikV~lGV~n~ 85 (375)
..|+..|++. .+-..|.. ..+++++-.+.++++.|..
T Consensus 52 ~iLk~~Gy~v-~~~~~~~~~~~~sla~gd~D~~~~~W~p 89 (302)
T COG2113 52 KILKGLGYTV-ELVTLDTAVMYQSLAKGDLDVFPEAWLP 89 (302)
T ss_pred HHHHhCCCcc-eeeeccHHHHHHHHHcCCCccccceecC
Confidence 4668888755 56666644 5688888889999999964
No 91
>cd06598 GH31_transferase_CtsZ CtsZ (cyclic tetrasaccharide-synthesizing enzyme Z) is a bacterial 6-alpha-glucosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsY. CtsZ and CtsY both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=22.12 E-value=7.5e+02 Score=24.20 Aligned_cols=26 Identities=4% Similarity=-0.104 Sum_probs=22.2
Q ss_pred HHHHHHHHhhhCCCCeeeeccccccc
Q 017202 183 IMSQYLQFLSSTKAPFWINAYTYFAY 208 (375)
Q Consensus 183 ~l~~~~dfL~~~~sp~~vNiyPyf~~ 208 (375)
-.+.+++-|.+.|--++++++||...
T Consensus 71 dp~~mi~~L~~~G~k~~~~v~P~v~~ 96 (317)
T cd06598 71 DPAGMIADLAKKGVKTIVITEPFVLK 96 (317)
T ss_pred CHHHHHHHHHHcCCcEEEEEcCcccC
Confidence 45688899999999999999998764
No 92
>PF02055 Glyco_hydro_30: O-Glycosyl hydrolase family 30; InterPro: IPR001139 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 30 GH30 from CAZY comprises enzymes with only one known activity; glucosylceramidase (3.2.1.45 from EC). Family 30 encompasses the mammalian glucosylceramidases. Human acid beta-glucosidase (D-glucosyl-N-acylsphingosine glucohydrolase), cleaves the glucosidic bonds of glucosylceramide and synthetic beta-glucosides []. Any one of over 50 different mutations in the gene of glucocerebrosidase have been found to affect activity of this hydrolase, producing variants of Gaucher disease, the most prevalent lysosomal storage disease [, ].; GO: 0004348 glucosylceramidase activity, 0006665 sphingolipid metabolic process, 0007040 lysosome organization, 0005764 lysosome; PDB: 2VT0_B 1NOF_A 2Y24_A 2WCG_B 2J25_A 3GXM_D 1Y7V_B 2NT0_C 3GXF_C 3GXD_A ....
Probab=22.09 E-value=8.5e+02 Score=25.84 Aligned_cols=86 Identities=19% Similarity=0.164 Sum_probs=50.3
Q ss_pred hCCCeEEEEecc--------cccc---ccC----CH--HHHHHHHHhcccccC-CCceEEEEEeccccccC------CC-
Q 017202 73 NSNIELIVTVEN--------QMLA---VLV----DP--QQALQWVSTHIKPYF-PATKITGIAVGNEVFTD------DD- 127 (375)
Q Consensus 73 ~~gikV~lGV~n--------~~l~---~la----~~--~~A~~wv~~~v~~~~-~~~~I~~I~VGNE~l~~------~~- 127 (375)
+.++||+..-|- .... .+. ++ +.-...+.+-|+.|- -+..|.+|++.||.... .+
T Consensus 166 ~~~lki~aSpWSpP~WMKtn~~~~g~g~l~g~~~~~y~~~yA~Y~vkfi~aY~~~GI~i~aiT~QNEP~~~~~~~~~~~s 245 (496)
T PF02055_consen 166 NPNLKIFASPWSPPAWMKTNGSMNGGGSLKGSLGDEYYQAYADYFVKFIQAYKKEGIPIWAITPQNEPDNGSDPNYPWPS 245 (496)
T ss_dssp HTT-EEEEEES---GGGBTTSSSCSS-BBSCGTTSHHHHHHHHHHHHHHHHHHCTT--ESEEESSSSCCGGGSTT-SSC-
T ss_pred CCCcEEEEecCCCCHHHccCCcCcCCCccCCCCCchhHHHHHHHHHHHHHHHHHCCCCeEEEeccCCCCCCCCCCCCCCc
Confidence 356999999993 1111 111 11 122344555566663 34789999999999852 11
Q ss_pred ch-hHHhHHHHHHH-HHHHHHhcCCCCceeEec
Q 017202 128 TS-LIQNLVPATVS-IHGALVQLGLDKYIQVST 158 (375)
Q Consensus 128 ~~-~~~~Lv~am~~-v~~aL~~~gl~~~IkVsT 158 (375)
+. .+++....|++ +.-+|+++|+..++|+=.
T Consensus 246 ~~~t~~~~~~Fi~~~LgP~l~~~~~g~d~kI~~ 278 (496)
T PF02055_consen 246 MGWTPEEQADFIKNYLGPALRKAGLGKDVKILI 278 (496)
T ss_dssp -B--HHHHHHHHHHTHHHHHHTSTT-TTSEEEE
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCceEEEE
Confidence 11 25667777876 899999999955677643
No 93
>TIGR02690 resist_ArsH arsenical resistance protein ArsH. Members of this protein family occur in arsenate resistance operons that include at least two different types of arsenate reductase. ArsH is not required for arsenate resistance in some systems. This family belongs to the larger family of NADPH-dependent FMN reductases (Pfam model pfam03358). The function of ArsH is not known.
Probab=22.09 E-value=4.5e+02 Score=24.72 Aligned_cols=75 Identities=5% Similarity=-0.027 Sum_probs=47.5
Q ss_pred HHHHHHHhcccccCCCceEEEEEeccccccCCCchhHHhHHHHHHHHHHHHHhcCCCCceeEecccccccccccCCCCCC
Q 017202 95 QALQWVSTHIKPYFPATKITGIAVGNEVFTDDDTSLIQNLVPATVSIHGALVQLGLDKYIQVSTPNSLAVLEESYPPSAG 174 (375)
Q Consensus 95 ~A~~wv~~~v~~~~~~~~I~~I~VGNE~l~~~~~~~~~~Lv~am~~v~~aL~~~gl~~~IkVsT~~~~~v~~~~~pPS~g 174 (375)
...+|+.+....- +..++.+-+..-.++..+.. . .|.++.+++.++.+. -+-+.||+- ..++|
T Consensus 44 ~la~~~~~~~~~~--g~~v~~idl~~lPl~~~d~~---~-~p~v~~l~~~v~~AD---gvii~TPEY----n~sip---- 106 (219)
T TIGR02690 44 LLAEEAARLLGCE--GRETRIFDPPGLPLPDAAHA---D-HPKVRELRQLSEWSE---GQVWCSPER----HGAIT---- 106 (219)
T ss_pred HHHHHHHHHHhhc--CCEEEEeCcccCCCCCcCcc---c-CHHHHHHHHHHHhCC---EEEEeCCcc----ccCcC----
Confidence 3446666554432 24566666676667654322 2 568888888888762 377888862 33444
Q ss_pred ccchhhHHHHHHHHHHhhh
Q 017202 175 SFKTEVAGIMSQYLQFLSS 193 (375)
Q Consensus 175 ~F~~~~~~~l~~~~dfL~~ 193 (375)
..|+.++|||..
T Consensus 107 -------g~LKNaiDwls~ 118 (219)
T TIGR02690 107 -------GSQKDQIDWIPL 118 (219)
T ss_pred -------HHHHHHHHhccc
Confidence 688999999764
No 94
>PRK02710 plastocyanin; Provisional
Probab=21.90 E-value=78 Score=26.56 Aligned_cols=22 Identities=27% Similarity=0.223 Sum_probs=15.1
Q ss_pred CcchhhhHHHHHHHHHHhhhhc
Q 017202 1 MATFCRNIALIPFFLLLSLTFS 22 (375)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~ 22 (375)
|++|+|.++..+.++++++++.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~ 22 (119)
T PRK02710 1 MAKRLRSIAAALVAVVSSFGLG 22 (119)
T ss_pred CchhHHHHHHHHHHHHHHHHhc
Confidence 7888888776666666655553
No 95
>COG5014 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=21.65 E-value=99 Score=28.54 Aligned_cols=26 Identities=23% Similarity=0.364 Sum_probs=21.0
Q ss_pred CCCHHHHHHHH----hcCCCCEEEEccCCh
Q 017202 40 LPPPDKVVDLL----SSLKITKSRIYDTNP 65 (375)
Q Consensus 40 ~ps~~~v~~~l----k~~~~~~VRlY~~d~ 65 (375)
.-+|.+|++-| |++|++.|||=++.|
T Consensus 73 f~~P~eVaeRL~ei~K~~g~d~vRiSG~EP 102 (228)
T COG5014 73 FLSPEEVAERLLEISKKRGCDLVRISGAEP 102 (228)
T ss_pred ccCHHHHHHHHHHHHHhcCCcEEEeeCCCc
Confidence 34789998755 789999999987764
No 96
>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=21.36 E-value=1.6e+02 Score=26.54 Aligned_cols=59 Identities=24% Similarity=0.431 Sum_probs=35.2
Q ss_pred EEEEccCC-hHHHH----HHh--hCCCeEEEEeccccccccCCHHHHHHHHHhcccccCCCceEEEEEecccc
Q 017202 57 KSRIYDTN-PQVLT----AFA--NSNIELIVTVENQMLAVLVDPQQALQWVSTHIKPYFPATKITGIAVGNEV 122 (375)
Q Consensus 57 ~VRlY~~d-~~vL~----A~~--~~gikV~lGV~n~~l~~la~~~~A~~wv~~~v~~~~~~~~I~~I~VGNE~ 122 (375)
.+.+||+. .+++. |-. ..|+-+|-.+-|++ ++ ...+.|+. .|.. |.+.++.-|.|||..
T Consensus 71 klQiwDTagqEryrtiTTayyRgamgfiLmyDitNee--Sf---~svqdw~t-qIkt-ysw~naqvilvgnKC 136 (193)
T KOG0093|consen 71 KLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEE--SF---NSVQDWIT-QIKT-YSWDNAQVILVGNKC 136 (193)
T ss_pred EEEEEecccchhhhHHHHHHhhccceEEEEEecCCHH--HH---HHHHHHHH-Hhee-eeccCceEEEEeccc
Confidence 45567776 33332 222 24556666666543 22 35567865 3444 478899999999987
No 97
>PRK09607 rps11p 30S ribosomal protein S11P; Reviewed
Probab=21.22 E-value=2.1e+02 Score=25.02 Aligned_cols=36 Identities=17% Similarity=0.189 Sum_probs=27.2
Q ss_pred HHHHHHHhcCCCCEEEEc--c--------CC---hHHHHHHhhCCCeEE
Q 017202 44 DKVVDLLSSLKITKSRIY--D--------TN---PQVLTAFANSNIELI 79 (375)
Q Consensus 44 ~~v~~~lk~~~~~~VRlY--~--------~d---~~vL~A~~~~gikV~ 79 (375)
+++.+.++.+|++.|+++ + +. +.+|.++...|++|.
T Consensus 60 e~~~~~~~~~Gi~~v~v~vkG~Ggn~~~~~G~Gr~~airal~~~glkI~ 108 (132)
T PRK09607 60 EKAAEDAKEKGITGVHIKVRAPGGNGQKSPGPGAQAAIRALARAGLRIG 108 (132)
T ss_pred HHHHHHHHHcCCcEEEEEEEecCCCCCcCCCCcHHHHHHHHHHCCCEEE
Confidence 445566777899988877 4 33 359999999999976
No 98
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=21.04 E-value=6.8e+02 Score=23.29 Aligned_cols=50 Identities=6% Similarity=0.024 Sum_probs=35.5
Q ss_pred eEEecCCCCCCCCHHHHHHHHhcCCCCEEEEccC---C-hHHHHHHhhCCCeEEE
Q 017202 30 GVNYGQVANNLPPPDKVVDLLSSLKITKSRIYDT---N-PQVLTAFANSNIELIV 80 (375)
Q Consensus 30 GinYg~~~~n~ps~~~v~~~lk~~~~~~VRlY~~---d-~~vL~A~~~~gikV~l 80 (375)
.+|.+..-..+ +.++.++.++..||+.|-++.. + ..+.+.++.+||++..
T Consensus 5 ~~~~~~~~~~~-~l~~~l~~~a~~Gf~~VEl~~~~~~~~~~~~~~l~~~gl~~~~ 58 (258)
T PRK09997 5 SANLSMLFGEY-DFLARFEKAAQCGFRGVEFMFPYDYDIEELKQVLASNKLEHTL 58 (258)
T ss_pred eeeeehhccCC-CHHHHHHHHHHhCCCEEEEcCCCCCCHHHHHHHHHHcCCcEEE
Confidence 34444433343 3577888899999999998754 3 3577788899999875
No 99
>cd06418 GH25_BacA-like BacA is a bacterial lysin from Enterococcus faecalis that degrades bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues. BacA is homologous to the YbfG and YkuG lysins of Bacillus subtilis. BacA has a C-terminal catalytic glycosyl hydrolase family 25 (GH25) domain and an N-terminal peptidoglycan-binding domain comprised of three alpha helices which is similar to a domain found in matrixins.
Probab=20.83 E-value=6.8e+02 Score=23.24 Aligned_cols=106 Identities=17% Similarity=0.166 Sum_probs=67.1
Q ss_pred CCHHHHHHHHhcCCCCEEEEccCC-----------hHHHHHHhhCCCeEEEEecccc---ccccC---CHHHHHHHHHhc
Q 017202 41 PPPDKVVDLLSSLKITKSRIYDTN-----------PQVLTAFANSNIELIVTVENQM---LAVLV---DPQQALQWVSTH 103 (375)
Q Consensus 41 ps~~~v~~~lk~~~~~~VRlY~~d-----------~~vL~A~~~~gikV~lGV~n~~---l~~la---~~~~A~~wv~~~ 103 (375)
|+. ...+.+|+.++..|=.|=++ +.=++.+...|++++. |++.. ..... ....|.+-+..+
T Consensus 21 ~t~-~~a~~l~~~gy~~vgrYls~~~~~~~~k~lt~~e~~~i~~~Gl~~~p-Iyq~~~~~~~~~~~~~G~~dA~~A~~~A 98 (212)
T cd06418 21 PTD-ARAQTLKAAGYGIVGRYLTGSPGGCLSKNLTATELETITAAGLKVFP-IYQGGGYSLDYFGYEQGVKDARDAVAAA 98 (212)
T ss_pred CCH-HHHHHHHHCCCeEEEEEcCCCCCCCCCCCCCHHHHHHHHHCCCEEEE-EEECCCccccccCHHHHHHHHHHHHHHH
Confidence 444 55677788888766666332 2356788889999774 34332 11221 234454445555
Q ss_pred ccccCCCceEEEEEeccccccCCCchhHHhHHHHHHHHHHHHHhcCCC
Q 017202 104 IKPYFPATKITGIAVGNEVFTDDDTSLIQNLVPATVSIHGALVQLGLD 151 (375)
Q Consensus 104 v~~~~~~~~I~~I~VGNE~l~~~~~~~~~~Lv~am~~v~~aL~~~gl~ 151 (375)
..--.|...+.++.|-...... +....++|+++-+.++|...||.
T Consensus 99 ~~lG~p~gs~IYfavD~d~~~~---~~~~~v~~Y~~a~~~~l~~~gY~ 143 (212)
T cd06418 99 RALGFPPGTIIYFAVDFDALDD---EVTEVILPYFRGWNDALHEAGYR 143 (212)
T ss_pred HHcCCCCCCEEEEEeecCCCcc---hhHHHHHHHHHHHHHHHHhcCCc
Confidence 4434465556688887666432 24578999999999999999874
No 100
>PRK05309 30S ribosomal protein S11; Validated
Probab=20.60 E-value=2.2e+02 Score=24.49 Aligned_cols=36 Identities=6% Similarity=0.226 Sum_probs=27.1
Q ss_pred HHHHHHHhcCCCCEEEEc--cCC---hHHHHHHhhCCCeEE
Q 017202 44 DKVVDLLSSLKITKSRIY--DTN---PQVLTAFANSNIELI 79 (375)
Q Consensus 44 ~~v~~~lk~~~~~~VRlY--~~d---~~vL~A~~~~gikV~ 79 (375)
+.+.+.++.+|++.|+++ +.. ..+|.++...|++|.
T Consensus 67 ~~~~~~~~~~gi~~v~v~ikG~G~Gr~~air~L~~~glkI~ 107 (128)
T PRK05309 67 EDAAKKAKEHGMKTVEVFVKGPGSGRESAIRALQAAGLEVT 107 (128)
T ss_pred HHHHHHHHHcCCcEEEEEEECCCCcHHHHHHHHHHCCCEEE
Confidence 344566677899999998 333 469999999999865
No 101
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=20.51 E-value=8.5e+02 Score=24.21 Aligned_cols=129 Identities=16% Similarity=0.136 Sum_probs=77.8
Q ss_pred cCCCCCCccchhhHHHHHHHHHHhhhCCCCeeeeccccccccCCCCccCccccccCCCC-------CcccCCCCcccchH
Q 017202 168 SYPPSAGSFKTEVAGIMSQYLQFLSSTKAPFWINAYTYFAYKDAPNRISLDYALFNPNS-------GMVDPYTKLHYDNM 240 (375)
Q Consensus 168 ~~pPS~g~F~~~~~~~l~~~~dfL~~~~sp~~vNiyPyf~~~~~~~~i~l~~a~f~~~~-------~~~d~~~~~~y~n~ 240 (375)
.+|...+-++++..+.++.++|.+.+.|+.+.+.+.-. +..........-. ..+.. ......+......+
T Consensus 63 ~~~~~~~l~~d~~i~~~~~l~~~vh~~g~~~~~Ql~H~--G~~~~~~~~~~~~-~~ps~~~~~~~~~~~~~mt~~eI~~i 139 (343)
T cd04734 63 PAFGNLNASDDEIIPGFRRLAEAVHAHGAVIMIQLTHL--GRRGDGDGSWLPP-LAPSAVPEPRHRAVPKAMEEEDIEEI 139 (343)
T ss_pred CCCCccccCCHHHHHHHHHHHHHHHhcCCeEEEeccCC--CcCcCcccCCCcc-cCCCCCCCCCCCCCCCcCCHHHHHHH
Confidence 45556677787777889999999999999999997642 1110000000000 00000 00111222234456
Q ss_pred HHHHHHHHHHHHHHcCCCCceEEEeeccCC-----CCCC---CCCCCCCHHHHHHHHHHHHHHHHhcCC
Q 017202 241 LYAQVDAAIFAMARLGYNGIEVRVSETGWP-----SKGD---PNEVGATVVNAATYNKNLLRRQMANEG 301 (375)
Q Consensus 241 fda~~dav~~al~~~g~~~~~vvItETGWP-----s~G~---~~~~~As~~na~~y~~~~i~~~~~~~G 301 (375)
.+...++...|. ++||.+++|..+- |+. |.-. ..+-+.|++|-.+|..++++.+++..|
T Consensus 140 i~~f~~AA~ra~-~aGfDgVeih~ah-GyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~~ir~~vg 206 (343)
T cd04734 140 IAAFADAARRCQ-AGGLDGVELQAAH-GHLIDQFLSPLTNRRTDEYGGSLENRMRFLLEVLAAVRAAVG 206 (343)
T ss_pred HHHHHHHHHHHH-HcCCCEEEEcccc-chHHHHhhCCCcCCCCCcCCCCHHHHhHHHHHHHHHHHHHcC
Confidence 666666666554 4799999998764 642 3222 122457899999999999999997655
No 102
>PF00135 COesterase: Carboxylesterase family The prints entry is specific to acetylcholinesterase; InterPro: IPR002018 Higher eukaryotes have many distinct esterases. Among the different types are those which act on carboxylic esters (3.1.1 from EC). Carboxyl-esterases have been classified into three categories (A, B and C) on the basis of differential patterns of inhibition by organophosphates. The sequence of a number of type-B carboxylesterases indicates [, , ] that the majority are evolutionary related. As is the case for lipases and serine proteases, the catalytic apparatus of esterases involves three residues (catalytic triad): a serine, a glutamate or aspartate and a histidine.; PDB: 3B3Q_A 1CLE_B 1GQS_A 2VJD_A 1HBJ_A 2C5G_A 1U65_A 2WG1_A 1FSS_A 3M3D_A ....
Probab=20.45 E-value=45 Score=34.29 Aligned_cols=19 Identities=32% Similarity=0.583 Sum_probs=16.8
Q ss_pred CHHHHHHHHHhcccccCCC
Q 017202 92 DPQQALQWVSTHIKPYFPA 110 (375)
Q Consensus 92 ~~~~A~~wv~~~v~~~~~~ 110 (375)
|+..|.+||++||..|.++
T Consensus 188 Dq~~AL~WV~~nI~~FGGD 206 (535)
T PF00135_consen 188 DQRLALKWVQDNIAAFGGD 206 (535)
T ss_dssp HHHHHHHHHHHHGGGGTEE
T ss_pred hhHHHHHHHHhhhhhcccC
Confidence 6789999999999999755
No 103
>PRK14114 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=20.04 E-value=4.4e+02 Score=25.00 Aligned_cols=70 Identities=16% Similarity=0.138 Sum_probs=48.6
Q ss_pred CCHHHHHHHHhcCCCCEEEEccCCh---------HHHHHHhhCCCeEEEEeccccccccCCHHHHHHHHHhcccccCCCc
Q 017202 41 PPPDKVVDLLSSLKITKSRIYDTNP---------QVLTAFANSNIELIVTVENQMLAVLVDPQQALQWVSTHIKPYFPAT 111 (375)
Q Consensus 41 ps~~~v~~~lk~~~~~~VRlY~~d~---------~vL~A~~~~gikV~lGV~n~~l~~la~~~~A~~wv~~~v~~~~~~~ 111 (375)
..|-++++.++..+++.+=+.|.|. ++++.++..=++|.+|=- +. +.+.++.|+..
T Consensus 30 ~dP~~~A~~~~~~ga~~lhivDLd~a~~g~~~n~~~i~~i~~~~~~v~vGGG---Ir---s~e~~~~~l~~--------- 94 (241)
T PRK14114 30 KDPAELVEKLIEEGFTLIHVVDLSKAIENSVENLPVLEKLSEFAEHIQIGGG---IR---SLDYAEKLRKL--------- 94 (241)
T ss_pred CCHHHHHHHHHHCCCCEEEEEECCCcccCCcchHHHHHHHHhhcCcEEEecC---CC---CHHHHHHHHHC---------
Confidence 4788999999889999999998872 467776653267777633 22 34566777652
Q ss_pred eEEEEEeccccccC
Q 017202 112 KITGIAVGNEVFTD 125 (375)
Q Consensus 112 ~I~~I~VGNE~l~~ 125 (375)
.+..|+||.+.+.+
T Consensus 95 Ga~rvvigT~a~~~ 108 (241)
T PRK14114 95 GYRRQIVSSKVLED 108 (241)
T ss_pred CCCEEEECchhhCC
Confidence 23457899999864
No 104
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=20.01 E-value=5.8e+02 Score=23.51 Aligned_cols=70 Identities=7% Similarity=0.105 Sum_probs=45.1
Q ss_pred CCHHHHHHHHhcCCCCEEEEccCCh----------HHHHHHhhCCCeEEEEeccccccccCCHHHHHHHHHhcccccCCC
Q 017202 41 PPPDKVVDLLSSLKITKSRIYDTNP----------QVLTAFANSNIELIVTVENQMLAVLVDPQQALQWVSTHIKPYFPA 110 (375)
Q Consensus 41 ps~~~v~~~lk~~~~~~VRlY~~d~----------~vL~A~~~~gikV~lGV~n~~l~~la~~~~A~~wv~~~v~~~~~~ 110 (375)
.+|.++++.+.+.|++.+-+.|.+. .+.+.++..++++++|= .+.+ ...++.|+..
T Consensus 32 ~~~~e~a~~~~~~G~~~l~i~dl~~~~~~~~~~~~~i~~i~~~~~~~l~v~G---Gi~~---~~~~~~~~~~-------- 97 (241)
T PRK13585 32 GDPVEVAKRWVDAGAETLHLVDLDGAFEGERKNAEAIEKIIEAVGVPVQLGG---GIRS---AEDAASLLDL-------- 97 (241)
T ss_pred CCHHHHHHHHHHcCCCEEEEEechhhhcCCcccHHHHHHHHHHcCCcEEEcC---CcCC---HHHHHHHHHc--------
Confidence 3677888888888888777766551 24445566889898852 2332 3455555542
Q ss_pred ceEEEEEeccccccC
Q 017202 111 TKITGIAVGNEVFTD 125 (375)
Q Consensus 111 ~~I~~I~VGNE~l~~ 125 (375)
....|++|++.+.+
T Consensus 98 -Ga~~v~iGs~~~~~ 111 (241)
T PRK13585 98 -GVDRVILGTAAVEN 111 (241)
T ss_pred -CCCEEEEChHHhhC
Confidence 23468999999754
Done!