Your job contains 1 sequence.
>017203
MTYDYRSVFDGGIIRAEFEKAGIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSK
FKPLTSTLHSVVDSSDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLC
ISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSNIRNVVFMGMGEPLNNYAA
LVEAVRIMTGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMP
AARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIP
FNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDKISA
KSTPPVTDIEDLCIR
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 017203
(375 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2091161 - symbol:AT3G19630 species:3702 "Arabi... 1465 4.2e-150 1
DICTYBASE|DDB_G0288255 - symbol:DDB_G0288255 "putative ri... 543 2.1e-52 1
UNIPROTKB|Q603C0 - symbol:rlmN "Dual-specificity RNA meth... 506 1.8e-48 1
TIGR_CMR|CJE_1882 - symbol:CJE_1882 "radical SAM enzyme, ... 489 1.1e-46 1
UNIPROTKB|Q3AC22 - symbol:rlmN "Probable dual-specificity... 485 3.0e-46 1
TIGR_CMR|CHY_1480 - symbol:CHY_1480 "radical SAM enzyme, ... 485 3.0e-46 1
TAIR|locus:2043225 - symbol:AT2G39670 species:3702 "Arabi... 484 3.8e-46 1
UNIPROTKB|P36979 - symbol:rlmN "23S rRNA m2A2503 methyltr... 482 6.2e-46 1
UNIPROTKB|Q723G9 - symbol:rlmN "Probable dual-specificity... 475 3.4e-45 1
UNIPROTKB|Q74E53 - symbol:rlmN "Dual-specificity RNA meth... 472 7.1e-45 1
TIGR_CMR|GSU_1111 - symbol:GSU_1111 "conserved hypothetic... 472 7.1e-45 1
UNIPROTKB|Q8EC29 - symbol:rlmN "Dual-specificity RNA meth... 469 1.5e-44 1
TIGR_CMR|SO_3315 - symbol:SO_3315 "conserved hypothetical... 469 1.5e-44 1
UNIPROTKB|Q9KTX3 - symbol:rlmN "Dual-specificity RNA meth... 464 5.0e-44 1
TIGR_CMR|VC_0757 - symbol:VC_0757 "conserved hypothetical... 464 5.0e-44 1
UNIPROTKB|Q83C77 - symbol:rlmN "Dual-specificity RNA meth... 463 6.4e-44 1
TIGR_CMR|CBU_1252 - symbol:CBU_1252 "radical SAM enzyme, ... 463 6.4e-44 1
UNIPROTKB|Q47WB7 - symbol:rlmN "Dual-specificity RNA meth... 462 8.1e-44 1
TIGR_CMR|CPS_4255 - symbol:CPS_4255 "radical SAM enzyme, ... 462 8.1e-44 1
TAIR|locus:2195608 - symbol:AT1G60230 species:3702 "Arabi... 461 1.0e-43 1
UNIPROTKB|Q81WH4 - symbol:rlmN "Probable dual-specificity... 460 1.3e-43 1
TIGR_CMR|BA_4002 - symbol:BA_4002 "conserved hypothetical... 460 1.3e-43 1
UNIPROTKB|O83107 - symbol:rlmN "Probable dual-specificity... 424 8.7e-40 1
UNIPROTKB|P0A644 - symbol:rlmN "Probable dual-specificity... 422 1.4e-39 1
GENEDB_PFALCIPARUM|PF14_0066 - symbol:PF14_0066 "radical ... 405 8.9e-38 1
UNIPROTKB|Q8IM25 - symbol:PF14_0066 "Radical SAM protein,... 405 8.9e-38 1
TIGR_CMR|SPO_3346 - symbol:SPO_3346 "radical SAM enzyme, ... 382 2.4e-35 1
>TAIR|locus:2091161 [details] [associations]
symbol:AT3G19630 species:3702 "Arabidopsis thaliana"
[GO:0003824 "catalytic activity" evidence=IEA] [GO:0005737
"cytoplasm" evidence=ISM;IEA] [GO:0008173 "RNA methyltransferase
activity" evidence=IEA] [GO:0051536 "iron-sulfur cluster binding"
evidence=IEA] [GO:0000278 "mitotic cell cycle" evidence=RCA]
[GO:0006396 "RNA processing" evidence=RCA] InterPro:IPR004383
InterPro:IPR007197 InterPro:IPR013785 Pfam:PF04055
PIRSF:PIRSF006004 GO:GO:0005737 EMBL:CP002686 Gene3D:3.20.20.70
GO:GO:0051536 GO:GO:0006364 GO:GO:0008173 GO:GO:0001510
eggNOG:COG0820 HOGENOM:HOG000217991 TIGRFAMs:TIGR00048
EMBL:BT003921 EMBL:BT005008 IPI:IPI00533080 RefSeq:NP_188597.1
UniGene:At.38376 ProteinModelPortal:Q84JV6 SMR:Q84JV6 STRING:Q84JV6
PRIDE:Q84JV6 DNASU:821500 EnsemblPlants:AT3G19630.1 GeneID:821500
KEGG:ath:AT3G19630 TAIR:At3g19630 InParanoid:Q84JV6 OMA:IFIEYIM
PhylomeDB:Q84JV6 ProtClustDB:CLSN2684692 ArrayExpress:Q84JV6
Genevestigator:Q84JV6 Uniprot:Q84JV6
Length = 372
Score = 1465 (520.8 bits), Expect = 4.2e-150, P = 4.2e-150
Identities = 280/369 (75%), Positives = 318/369 (86%)
Query: 6 RSVFDGGIIRAEFEKAGIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLT 65
+SVFD I++EFE AGI F IWKYVI+NP+C WDE PSLPSAAYSLL SKFK LT
Sbjct: 4 KSVFDASEIKSEFESAGINPKFAIQIWKYVIQNPDCVWDEIPSLPSAAYSLLHSKFKTLT 63
Query: 66 STLHSVVDSSDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQV 125
S+LHS+ SSD T+KLL+KLQNG FVEAV+MRYD+ LG GKPRPGG RSTLCISSQV
Sbjct: 64 SSLHSLFHSSDGTTSKLLIKLQNGAFVEAVVMRYDTRLGMLGGKPRPGGIRSTLCISSQV 123
Query: 126 GCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSNIRNVVFMGMGEPLNNYAALVEAV 185
GCKMGC FCATGTMGFKSNL+SGEIVEQLVHASR+++IRN+VFMGMGEPLNNY A+VEAV
Sbjct: 124 GCKMGCTFCATGTMGFKSNLTSGEIVEQLVHASRIADIRNIVFMGMGEPLNNYNAVVEAV 183
Query: 186 RIMTGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAF 245
R+M PFQ+SPKRIT+STVGIVHAINK H+DLPG++LAVSLHAPVQ++RCQIMPAARAF
Sbjct: 184 RVMLNQPFQLSPKRITISTVGIVHAINKLHNDLPGVSLAVSLHAPVQEIRCQIMPAARAF 243
Query: 246 PLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIG 305
PL+KLM+AL+ +QKNSQQKIFIEYIMLDGVND+EQHAH LG+LL+TFQVV+NLIPFNPIG
Sbjct: 244 PLQKLMDALQTFQKNSQQKIFIEYIMLDGVNDQEQHAHLLGELLKTFQVVINLIPFNPIG 303
Query: 306 SVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDKISAKSTPP 365
S SQF TSS VS FQKILR +Y IRTT+RK+MGQDISGACGQLVVN PD T
Sbjct: 304 STSQFETSSIQGVSRFQKILRETYKIRTTIRKEMGQDISGACGQLVVNQPDIKKTPGTVE 363
Query: 366 VTDIEDLCI 374
+ DIEDL +
Sbjct: 364 LRDIEDLLL 372
>DICTYBASE|DDB_G0288255 [details] [associations]
symbol:DDB_G0288255 "putative ribosomal RNA large
subunit methyltransferase N" species:44689 "Dictyostelium
discoideum" [GO:0051536 "iron-sulfur cluster binding" evidence=IEA]
[GO:0008173 "RNA methyltransferase activity" evidence=IEA]
[GO:0006364 "rRNA processing" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0003824 "catalytic activity" evidence=IEA]
[GO:0001510 "RNA methylation" evidence=IEA] HAMAP:MF_01849
InterPro:IPR004383 InterPro:IPR006638 InterPro:IPR007197
InterPro:IPR013785 Pfam:PF04055 PIRSF:PIRSF006004 SMART:SM00729
dictyBase:DDB_G0288255 GO:GO:0005737 Gene3D:3.20.20.70
GO:GO:0051536 EMBL:AAFI02000109 GO:GO:0006364 GO:GO:0008173
GO:GO:0001510 eggNOG:COG0820 TIGRFAMs:TIGR00048 OMA:EMVFIPD
RefSeq:XP_636811.1 ProteinModelPortal:Q54J76 STRING:Q54J76
EnsemblProtists:DDB0304824 GeneID:8626528 KEGG:ddi:DDB_G0288255
InParanoid:Q54J76 Uniprot:Q54J76
Length = 407
Score = 543 (196.2 bits), Expect = 2.1e-52, P = 2.1e-52
Identities = 138/377 (36%), Positives = 206/377 (54%)
Query: 12 GIIRAEFE----KAGIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTS- 66
GI + E E K G ++ IW ++ + + F + ++SK++
Sbjct: 53 GIQKDELEDKVLKLGYPKYLSEQIWAFMYNKGIVDINSFERVSKEKREEIKSKYEVNIGE 112
Query: 67 -TLHSVVDSSDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQV 125
T H + S D T KLL+ +G VE+V + P G R TLC+SSQV
Sbjct: 113 ITKHQL---SVDGTRKLLISF-DGAEVESVFI--------------PEGKRGTLCVSSQV 154
Query: 126 GCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN----------IRNVVFMGMGEPL 175
GC C FC TGT F NL++ EIV Q++ + N + N+VFMG GEP
Sbjct: 155 GCTFACTFCHTGTQKFIRNLTASEIVSQVIATRHVLNDFTDSSIKRTLTNIVFMGQGEPF 214
Query: 176 NNYAALVEAVRIMTGLP--FQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQD 233
NY + +A++I+T P + +ITVST G+V I++ SD PG+ LA+SLH+
Sbjct: 215 YNYRNVSKAIKIITD-PNGLAIGKSKITVSTSGVVPLIDRLGSDFPGIGLAISLHSANDK 273
Query: 234 VRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQ 293
R +I+PA R +P+ +L+ A ++ KN +++I IEY+ML GVND EQ A+ L KL ++F
Sbjct: 274 TRSEIVPANRQWPISELVEACIKFSKNCKERITIEYVMLKGVNDSEQDAYDLVKLSKSFP 333
Query: 294 VVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVN 353
VNLIPFNP SQ+++SS + +S F KIL I+ T+R+ G+DI ACGQL
Sbjct: 334 SFVNLIPFNPWPG-SQYKSSSKETISQFSKILDDK-GIKVTIRQPRGRDILAACGQLNTE 391
Query: 354 LPDKISAKSTPPVTDIE 370
+I+ K P+ +++
Sbjct: 392 SIKEIN-KPIQPLENLD 407
>UNIPROTKB|Q603C0 [details] [associations]
symbol:rlmN "Dual-specificity RNA methyltransferase RlmN"
species:243233 "Methylococcus capsulatus str. Bath" [GO:0003674
"molecular_function" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
HAMAP:MF_01849 InterPro:IPR004383 InterPro:IPR006638
InterPro:IPR007197 InterPro:IPR013785 Pfam:PF04055
PIRSF:PIRSF006004 SMART:SM00729 GO:GO:0005737 Gene3D:3.20.20.70
GO:GO:0046872 GO:GO:0051539 GO:GO:0008033 EMBL:AE017282
GenomeReviews:AE017282_GR GO:GO:0001510 eggNOG:COG0820 KO:K06941
OMA:MACDFCA GO:GO:0070040 TIGRFAMs:TIGR00048 HOGENOM:HOG000217992
RefSeq:YP_115280.1 ProteinModelPortal:Q603C0 GeneID:3104120
KEGG:mca:MCA2887 PATRIC:22609656 Uniprot:Q603C0
Length = 366
Score = 506 (183.2 bits), Expect = 1.8e-48, P = 1.8e-48
Identities = 115/301 (38%), Positives = 184/301 (61%)
Query: 64 LTSTLHSVVDSSDDVTT-KLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCIS 122
L+ TL S +++ ++ +L+++ ++ +++ D+ + + P R+TLC+S
Sbjct: 59 LSKTLRSRLEAVSEIRPPELVLEQRSADGTRKWVLQVDA-VNRVETVLIPDEGRNTLCVS 117
Query: 123 SQVGCKMGCNFCATGTMGFKSNLSSGEIVEQL-VHASRLSN---IRNVVFMGMGEPLNNY 178
SQVGC + C+FC+T GF NL++ EI+ QL V RL I NVV MGMGEPL N+
Sbjct: 118 SQVGCSLECSFCSTARQGFNRNLTTAEIIGQLWVAQHRLDEEQRISNVVLMGMGEPLLNF 177
Query: 179 AALVEAVRIMTG-LPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQ 237
+V A R+M + +S +R+T+ST GIV A+++ +++ ++LAVSLHAP +R +
Sbjct: 178 GNVVAATRLMMDDFAYGLSKRRVTLSTSGIVPALDRL-AEVSDISLAVSLHAPDDTLRNE 236
Query: 238 IMPAARAFPLEKLMNALKEYQ-KNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVV 296
++P R +P+ +L+ A K Y +++K+ EY+MLDGVND +HA L +LL V
Sbjct: 237 LVPINRKYPIRELLAACKRYVGTENRRKVTFEYVMLDGVNDRPEHARALVRLLSHVPSKV 296
Query: 297 NLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPD 356
NLIPFNP + S +R S + ++ F + L+ + + TT RK G+DI ACGQLV + D
Sbjct: 297 NLIPFNPFPN-SAYRCSHPETIARFAQTLQDA-GLITTTRKTRGRDIDAACGQLVGKVND 354
Query: 357 K 357
+
Sbjct: 355 R 355
>TIGR_CMR|CJE_1882 [details] [associations]
symbol:CJE_1882 "radical SAM enzyme, Cfr family"
species:195099 "Campylobacter jejuni RM1221" [GO:0003824 "catalytic
activity" evidence=ISS] [GO:0008152 "metabolic process"
evidence=ISS] HAMAP:MF_01849 InterPro:IPR004383 InterPro:IPR006638
InterPro:IPR007197 InterPro:IPR013785 Pfam:PF04055
PIRSF:PIRSF006004 SMART:SM00729 GO:GO:0005737 Gene3D:3.20.20.70
GO:GO:0046872 GO:GO:0051539 EMBL:CP000025 GenomeReviews:CP000025_GR
GO:GO:0008033 GO:GO:0001510 eggNOG:COG0820 HOGENOM:HOG000217991
KO:K06941 OMA:MACDFCA GO:GO:0070040 TIGRFAMs:TIGR00048
RefSeq:YP_179852.1 ProteinModelPortal:Q5HS83 STRING:Q5HS83
GeneID:3230641 KEGG:cjr:CJE1882 PATRIC:20045594
ProtClustDB:PRK14462 BioCyc:CJEJ195099:GJC0-1921-MONOMER
Uniprot:Q5HS83
Length = 356
Score = 489 (177.2 bits), Expect = 1.1e-46, P = 1.1e-46
Identities = 120/339 (35%), Positives = 194/339 (57%)
Query: 23 IKQHF-IPLIWKYVIENPNCEWDEFPSLPS-AAYSLLRS-KFKPLTSTLHSVVDSSDDVT 79
IK F + I++++ + + + SLP L ++ F P+ + + S D +
Sbjct: 19 IKPMFRVKQIYQWIYQKYANNFSDMSSLPKDLRLELAQNFHFSPVKCVKN---EQSKDGS 75
Query: 80 TKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTM 139
K L +L +G +E+V++ GK R R T+C+SSQVGCK GC+FC T
Sbjct: 76 IKYLFELVDGLRIESVLLPMKEEKIDAEGK-RISHARYTICVSSQVGCKSGCSFCLTAKG 134
Query: 140 GFKSNLSSGEIVEQLVHASRLSNIR-----NVVFMGMGEPLNNYAALVEAVRIMT---GL 191
G K NLS+GEIV Q++ + +NI N+V+MGMGEPL+N + +AV+I+ GL
Sbjct: 135 GLKRNLSAGEIVGQILWIKKQNNIPYERRINIVYMGMGEPLDNLKNVSKAVKILAQNEGL 194
Query: 192 PFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLM 251
+SP+R T+ST G+ I + G+ LA+SLHA ++R ++MP +A+ + +M
Sbjct: 195 A--ISPRRQTISTSGLAKQIKELGQMNLGVLLAISLHAVNDELRTELMPINKAYNIAAIM 252
Query: 252 NALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFR 311
+A++E+ + ++++ EY+++DG+ND+ +HA +L KLL + VNLI FNP R
Sbjct: 253 DAVREFPIDQRKRVMFEYLLIDGINDKLEHAKELVKLLNGIKAKVNLILFNPHEGGLYKR 312
Query: 312 TSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 350
S ++ + FQ +L + T+R+ G DIS ACGQL
Sbjct: 313 PSLENAIK-FQDLLSNK-GVTCTIRESKGLDISAACGQL 349
>UNIPROTKB|Q3AC22 [details] [associations]
symbol:rlmN "Probable dual-specificity RNA
methyltransferase RlmN" species:246194 "Carboxydothermus
hydrogenoformans Z-2901" [GO:0008150 "biological_process"
evidence=ND] HAMAP:MF_01849 InterPro:IPR004383 InterPro:IPR006638
InterPro:IPR007197 InterPro:IPR013785 Pfam:PF04055
PIRSF:PIRSF006004 SMART:SM00729 GO:GO:0005737 Gene3D:3.20.20.70
GO:GO:0046872 EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0051539
GO:GO:0008033 GO:GO:0001510 eggNOG:COG0820 HOGENOM:HOG000217991
KO:K06941 OMA:MACDFCA GO:GO:0070040 TIGRFAMs:TIGR00048
RefSeq:YP_360312.1 ProteinModelPortal:Q3AC22 STRING:Q3AC22
GeneID:3728344 KEGG:chy:CHY_1480 PATRIC:21276091
BioCyc:CHYD246194:GJCN-1479-MONOMER Uniprot:Q3AC22
Length = 342
Score = 485 (175.8 bits), Expect = 3.0e-46, P = 3.0e-46
Identities = 112/322 (34%), Positives = 192/322 (59%)
Query: 33 KYVIENPNCEWDEFPSLPSAAYSLLRSKFK-PLTSTLHSVVDSSDDVTTKLLVKLQNGGF 91
+++ ++ ++++ +LP L+ F P +HS S D + K L+KL++
Sbjct: 31 EWIFKHGELDFNKMTNLPVRLREKLKENFLLPSLKIIHSK-KSRDGQSIKYLLKLKDNLG 89
Query: 92 VEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIV 151
+EAV+++Y +Y +T+C+S+QVGCKMGC FCATG GF NL++GE++
Sbjct: 90 IEAVLLKY-----RYG---------NTVCLSTQVGCKMGCKFCATGLGGFSRNLTAGEMI 135
Query: 152 EQLV--HASRLSNIRNVVFMGMGEPLNNYAALVEAVRIMTGLP-FQVSPKRITVSTVGIV 208
EQ++ AS I VV MG GEPL+N+ +++ +R + +S ++ITVST G+V
Sbjct: 136 EQILVLKASSSEKITRVVLMGSGEPLDNFTEVLKFMRKINEKDCLNISYRKITVSTCGMV 195
Query: 209 HAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIE 268
I + + LA+SLHAP +R +++P + + L +L++A + + +++ E
Sbjct: 196 PQIKALAEEKLPVTLAISLHAPDDALRNELIPINKRWGLAELLDAAWYFIDKTGRRVSFE 255
Query: 269 YIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGS 328
Y +++ VND +HA +L +LL+ V VNLIP+N I F+T S +K++ F+++L+ +
Sbjct: 256 YALIENVNDTVEHALKLAQLLQRKLVHVNLIPYNTIEK-RNFKTPSVEKINKFKEVLKRA 314
Query: 329 YNIRTTVRKQMGQDISGACGQL 350
I TVR+++G +I GACGQL
Sbjct: 315 -GIPVTVRRELGDEIDGACGQL 335
>TIGR_CMR|CHY_1480 [details] [associations]
symbol:CHY_1480 "radical SAM enzyme, Cfr family"
species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0003824 "catalytic activity" evidence=ISS] [GO:0008150
"biological_process" evidence=ND] HAMAP:MF_01849 InterPro:IPR004383
InterPro:IPR006638 InterPro:IPR007197 InterPro:IPR013785
Pfam:PF04055 PIRSF:PIRSF006004 SMART:SM00729 GO:GO:0005737
Gene3D:3.20.20.70 GO:GO:0046872 EMBL:CP000141
GenomeReviews:CP000141_GR GO:GO:0051539 GO:GO:0008033 GO:GO:0001510
eggNOG:COG0820 HOGENOM:HOG000217991 KO:K06941 OMA:MACDFCA
GO:GO:0070040 TIGRFAMs:TIGR00048 RefSeq:YP_360312.1
ProteinModelPortal:Q3AC22 STRING:Q3AC22 GeneID:3728344
KEGG:chy:CHY_1480 PATRIC:21276091
BioCyc:CHYD246194:GJCN-1479-MONOMER Uniprot:Q3AC22
Length = 342
Score = 485 (175.8 bits), Expect = 3.0e-46, P = 3.0e-46
Identities = 112/322 (34%), Positives = 192/322 (59%)
Query: 33 KYVIENPNCEWDEFPSLPSAAYSLLRSKFK-PLTSTLHSVVDSSDDVTTKLLVKLQNGGF 91
+++ ++ ++++ +LP L+ F P +HS S D + K L+KL++
Sbjct: 31 EWIFKHGELDFNKMTNLPVRLREKLKENFLLPSLKIIHSK-KSRDGQSIKYLLKLKDNLG 89
Query: 92 VEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIV 151
+EAV+++Y +Y +T+C+S+QVGCKMGC FCATG GF NL++GE++
Sbjct: 90 IEAVLLKY-----RYG---------NTVCLSTQVGCKMGCKFCATGLGGFSRNLTAGEMI 135
Query: 152 EQLV--HASRLSNIRNVVFMGMGEPLNNYAALVEAVRIMTGLP-FQVSPKRITVSTVGIV 208
EQ++ AS I VV MG GEPL+N+ +++ +R + +S ++ITVST G+V
Sbjct: 136 EQILVLKASSSEKITRVVLMGSGEPLDNFTEVLKFMRKINEKDCLNISYRKITVSTCGMV 195
Query: 209 HAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIE 268
I + + LA+SLHAP +R +++P + + L +L++A + + +++ E
Sbjct: 196 PQIKALAEEKLPVTLAISLHAPDDALRNELIPINKRWGLAELLDAAWYFIDKTGRRVSFE 255
Query: 269 YIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGS 328
Y +++ VND +HA +L +LL+ V VNLIP+N I F+T S +K++ F+++L+ +
Sbjct: 256 YALIENVNDTVEHALKLAQLLQRKLVHVNLIPYNTIEK-RNFKTPSVEKINKFKEVLKRA 314
Query: 329 YNIRTTVRKQMGQDISGACGQL 350
I TVR+++G +I GACGQL
Sbjct: 315 -GIPVTVRRELGDEIDGACGQL 335
>TAIR|locus:2043225 [details] [associations]
symbol:AT2G39670 species:3702 "Arabidopsis thaliana"
[GO:0003824 "catalytic activity" evidence=IEA] [GO:0005737
"cytoplasm" evidence=ISM] [GO:0006364 "rRNA processing"
evidence=IEA;RCA] [GO:0008173 "RNA methyltransferase activity"
evidence=IEA] [GO:0051536 "iron-sulfur cluster binding"
evidence=IEA] [GO:0006399 "tRNA metabolic process" evidence=RCA]
[GO:0009658 "chloroplast organization" evidence=RCA] [GO:0045036
"protein targeting to chloroplast" evidence=RCA] HAMAP:MF_01849
InterPro:IPR004383 InterPro:IPR006638 InterPro:IPR007197
InterPro:IPR013785 Pfam:PF04055 PIRSF:PIRSF006004 SMART:SM00729
GO:GO:0005737 EMBL:CP002685 Gene3D:3.20.20.70 GO:GO:0051536
GO:GO:0006364 GO:GO:0008173 GO:GO:0001510 TIGRFAMs:TIGR00048
IPI:IPI00528130 RefSeq:NP_850319.1 UniGene:At.24979
ProteinModelPortal:F4IVY6 SMR:F4IVY6 PRIDE:F4IVY6
EnsemblPlants:AT2G39670.2 GeneID:818550 KEGG:ath:AT2G39670
OMA:KEHAEAV PhylomeDB:F4IVY6 Uniprot:F4IVY6
Length = 431
Score = 484 (175.4 bits), Expect = 3.8e-46, P = 3.8e-46
Identities = 118/312 (37%), Positives = 179/312 (57%)
Query: 44 DEFPSLP-SAAYSLLRSKFKPLTSTLHSVVDSSDDVTTKLLVKLQNGGFVEAVIMRYDSS 102
++F +LP + L+ FK S ++ V ++D T KLL+KL++ +E V +
Sbjct: 105 EDFSNLPLTFRKGLVDGGFKVGRSPIYQTVTATDG-TIKLLLKLEDNLLIETVGIPVQDD 163
Query: 103 LGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRL-- 160
G R T C+SSQVGC + C+FCATG GF NL EI+EQ++ +
Sbjct: 164 --------EKGITRLTACVSSQVGCPLRCSFCATGKGGFSRNLQRHEIIEQVLAIEDVFK 215
Query: 161 SNIRNVVFMGMGEPLNNYAALVEAVRIMTGLPFQVSPKRITVSTVGIVHAINKFHSDLPG 220
+ NVVFMGMGEP+ N ++++A R + ++ + IT+STVG+ + I K S
Sbjct: 216 HRVTNVVFMGMGEPMLNLKSVLDAHRCLNK-DIEIGQRMITISTVGVPNTIKKLASHKLQ 274
Query: 221 LNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQ 280
LAVSLHAP Q +R +I+P+A+A+PLE +M ++Y + + +++ EY +L GVND+ +
Sbjct: 275 STLAVSLHAPNQSLREKIVPSAKAYPLEAIMKDCRDYFQETNRRVSFEYALLAGVNDQVE 334
Query: 281 HAHQLGKLLETFQVV--VNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQ 338
HA +L +LL + VNLIP+NPI S+++ V +F L S I +VR+
Sbjct: 335 HAVELAELLREWGKTYHVNLIPYNPIEG-SEYQRPYKKAVLAFAAALE-SRKITASVRQT 392
Query: 339 MGQDISGACGQL 350
G D S ACGQL
Sbjct: 393 RGLDASAACGQL 404
>UNIPROTKB|P36979 [details] [associations]
symbol:rlmN "23S rRNA m2A2503 methyltransferase and tRNA
m2A37 methyltransferase" species:83333 "Escherichia coli K-12"
[GO:0000049 "tRNA binding" evidence=IDA] [GO:0002935 "tRNA
(adenine-C2-)-methyltransferase activity" evidence=IMP;IDA]
[GO:0030488 "tRNA methylation" evidence=IMP;IDA] [GO:0070475 "rRNA
base methylation" evidence=IMP] [GO:0046677 "response to
antibiotic" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0070040 "rRNA (adenine-C2-)-methyltransferase activity"
evidence=IEA;IMP;IDA] [GO:0051539 "4 iron, 4 sulfur cluster
binding" evidence=IEA;IDA] [GO:0046872 "metal ion binding"
evidence=IEA] HAMAP:MF_01849 InterPro:IPR004383 InterPro:IPR006638
InterPro:IPR007197 InterPro:IPR013785 Pfam:PF04055
PIRSF:PIRSF006004 SMART:SM00729 GO:GO:0005737 Gene3D:3.20.20.70
EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR GO:GO:0046872 GO:GO:0046677 GO:GO:0051539
GO:GO:0000049 GO:GO:0070475 eggNOG:COG0820 KO:K06941 GO:GO:0070040
TIGRFAMs:TIGR00048 HOGENOM:HOG000217992 ProtClustDB:PRK11194
EMBL:U02965 PIR:D65028 RefSeq:NP_417012.1 RefSeq:YP_490745.1
PDB:3RF9 PDB:3RFA PDBsum:3RF9 PDBsum:3RFA ProteinModelPortal:P36979
SMR:P36979 DIP:DIP-12035N IntAct:P36979 MINT:MINT-1220055
PaxDb:P36979 PRIDE:P36979 EnsemblBacteria:EBESCT00000004286
EnsemblBacteria:EBESCT00000016514 GeneID:12932308 GeneID:946249
KEGG:ecj:Y75_p2470 KEGG:eco:b2517 PATRIC:32120427 EchoBASE:EB2301
EcoGene:EG12401 OMA:IYHFGVS BioCyc:EcoCyc:EG12401-MONOMER
BioCyc:ECOL316407:JW2501-MONOMER BioCyc:MetaCyc:EG12401-MONOMER
Genevestigator:P36979 GO:GO:0002935 Uniprot:P36979
Length = 384
Score = 482 (174.7 bits), Expect = 6.2e-46, P = 6.2e-46
Identities = 109/259 (42%), Positives = 157/259 (60%)
Query: 112 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQ------LVHASRLSN--- 162
P R+TLC+SSQVGC + C FC+T GF NL EI+ Q +V A++++
Sbjct: 110 PEDDRATLCVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVGAAKVTGQRP 169
Query: 163 IRNVVFMGMGEPLNNYAALVEAVRIMTG-LPFQVSPKRITVSTVGIVHAINKFHSDLPGL 221
I NVV MGMGEPL N +V A+ IM F +S +R+T+ST G+V A++K D+ +
Sbjct: 170 ITNVVMMGMGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDV 228
Query: 222 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDE 278
LA+SLHAP ++R +I+P + + +E + A++ Y + S Q ++ IEY+MLD VND
Sbjct: 229 ALAISLHAPNDEIRDEIVPINKKYNIETFLAAVRRYLEKSNANQGRVTIEYVMLDHVNDG 288
Query: 279 EQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQ 338
+HAHQL +LL+ +NLIP+NP R SS+ ++ F K+L SY T VRK
Sbjct: 289 TEHAHQLAELLKDTPCKINLIPWNPFPGAPYGR-SSNSRIDRFSKVLM-SYGFTTIVRKT 346
Query: 339 MGQDISGACGQLVVNLPDK 357
G DI ACGQL ++ D+
Sbjct: 347 RGDDIDAACGQLAGDVIDR 365
>UNIPROTKB|Q723G9 [details] [associations]
symbol:rlmN "Probable dual-specificity RNA
methyltransferase RlmN" species:265669 "Listeria monocytogenes
serotype 4b str. F2365" [GO:0003674 "molecular_function"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0008150 "biological_process" evidence=ND] HAMAP:MF_01849
InterPro:IPR004383 InterPro:IPR006638 InterPro:IPR007197
InterPro:IPR013785 Pfam:PF04055 PIRSF:PIRSF006004 SMART:SM00729
GO:GO:0005737 Gene3D:3.20.20.70 GO:GO:0046872 GO:GO:0051539
GO:GO:0008033 EMBL:AE017262 GenomeReviews:AE017262_GR GO:GO:0001510
eggNOG:COG0820 HOGENOM:HOG000217991 KO:K06941 ProtClustDB:PRK14455
GO:GO:0070040 TIGRFAMs:TIGR00048 RefSeq:YP_013115.1
ProteinModelPortal:Q723G9 STRING:Q723G9 GeneID:2797600
KEGG:lmf:LMOf2365_0509 PATRIC:20322220 OMA:LRTINDD Uniprot:Q723G9
Length = 367
Score = 475 (172.3 bits), Expect = 3.4e-45, P = 3.4e-45
Identities = 118/345 (34%), Positives = 188/345 (54%)
Query: 19 EKAGIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHS-VVDSSDD 77
E G K+ +W ++ ++E ++P LL + F + +TL VV S D
Sbjct: 19 EAHGQKKFRATQVWDWLYRKRVKTFEEMSNVPKETIELLTANF--VMNTLEEQVVQESTD 76
Query: 78 VTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATG 137
TTK L KL +G +E V+M+ + L ++C+++QVGC +GC FCA+G
Sbjct: 77 GTTKYLFKLSDGNLIETVMMKQEYGL--------------SVCVTTQVGCNIGCTFCASG 122
Query: 138 TMGFKSNLSSGEIVEQLVHASRLSNIRN-------VVFMGMGEPLNNYAALVEAVRIMT- 189
+ +L++GEIVEQ+++ + RN VV MG+GEP +NY +++ +R++
Sbjct: 123 LLKKSRDLTAGEIVEQIMNVQHYLDGRNLEERVSHVVVMGIGEPFDNYDNVMDFLRVINH 182
Query: 190 --GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPL 247
GL + + ITVST G+ I F ++ +NLA+SLHAP ++R IM + + +
Sbjct: 183 DKGLA--IGARHITVSTSGLAPRIIDFANEDFQVNLAISLHAPNNELRTSIMRINKTYSI 240
Query: 248 EKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQ--VVVNLIPFNPIG 305
EKLM A+ Y + ++I EYIML GVND ++ A +L LL + VNLIP+NP+
Sbjct: 241 EKLMEAIHYYVNKTNRRITFEYIMLKGVNDHKKEALELAALLGEHRHLAYVNLIPYNPVD 300
Query: 306 SVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 350
+ S+ + V +F L+ + I +R++ G DI ACGQL
Sbjct: 301 EHIDYERSTKEDVLAFYDTLKKN-GINCVIRREHGTDIDAACGQL 344
>UNIPROTKB|Q74E53 [details] [associations]
symbol:rlmN "Dual-specificity RNA methyltransferase RlmN"
species:243231 "Geobacter sulfurreducens PCA" [GO:0003674
"molecular_function" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
HAMAP:MF_01849 InterPro:IPR004383 InterPro:IPR006638
InterPro:IPR007197 InterPro:IPR013785 Pfam:PF04055
PIRSF:PIRSF006004 SMART:SM00729 GO:GO:0005737 Gene3D:3.20.20.70
GO:GO:0046872 GO:GO:0051539 EMBL:AE017180 GenomeReviews:AE017180_GR
GO:GO:0008033 GO:GO:0001510 eggNOG:COG0820 KO:K06941 GO:GO:0070040
TIGRFAMs:TIGR00048 HOGENOM:HOG000217992 OMA:IYHFGVS
RefSeq:NP_952164.1 ProteinModelPortal:Q74E53 GeneID:2688552
KEGG:gsu:GSU1111 PATRIC:22024984 ProtClustDB:PRK14463
BioCyc:GSUL243231:GH27-1106-MONOMER Uniprot:Q74E53
Length = 360
Score = 472 (171.2 bits), Expect = 7.1e-45, P = 7.1e-45
Identities = 122/310 (39%), Positives = 168/310 (54%)
Query: 66 STLH-SVVDSSDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQ 124
STL ++ S D T K L +L +G VE+V++ P R+TLCISSQ
Sbjct: 65 STLSPEALEISRDGTRKYLFRLDDGCSVESVLI--------------PEEDRNTLCISSQ 110
Query: 125 VGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSNIRNVVFMGMGEPLNNYAALVEA 184
VGC M C FC TGT NL++ EIV Q+ R +RN+VFMGMGEPL N ++ A
Sbjct: 111 VGCAMACEFCLTGTFRLTRNLTTAEIVNQVCAVQRDVPVRNIVFMGMGEPLANLDNVIRA 170
Query: 185 VRIMT---GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPA 241
++IM GL F S +RITVST G+V + + + +NLAVSL+A ++R +IMP
Sbjct: 171 LQIMLHDDGLQF--STRRITVSTAGLVPEMERLGRSVT-VNLAVSLNATTDELRDRIMPI 227
Query: 242 ARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPF 301
R +PL L++A + + ++KI IEY++L GVND A +L +LL +NLIPF
Sbjct: 228 NRKYPLAVLLDACRRFPLPGRRKITIEYVLLGGVNDTLDDAKRLVRLLSDIPSKINLIPF 287
Query: 302 NPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDKISAK 361
N S FR+ S D + F + L + R G DIS ACGQL L D +
Sbjct: 288 NEHEGCS-FRSPSQDAIDRFHRYLLDKH-FTVITRSSRGADISAACGQLKGKL-DALKPS 344
Query: 362 STPPVTDIED 371
++ D
Sbjct: 345 GAGKQIEVSD 354
>TIGR_CMR|GSU_1111 [details] [associations]
symbol:GSU_1111 "conserved hypothetical protein TIGR00048"
species:243231 "Geobacter sulfurreducens PCA" [GO:0003674
"molecular_function" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
HAMAP:MF_01849 InterPro:IPR004383 InterPro:IPR006638
InterPro:IPR007197 InterPro:IPR013785 Pfam:PF04055
PIRSF:PIRSF006004 SMART:SM00729 GO:GO:0005737 Gene3D:3.20.20.70
GO:GO:0046872 GO:GO:0051539 EMBL:AE017180 GenomeReviews:AE017180_GR
GO:GO:0008033 GO:GO:0001510 eggNOG:COG0820 KO:K06941 GO:GO:0070040
TIGRFAMs:TIGR00048 HOGENOM:HOG000217992 OMA:IYHFGVS
RefSeq:NP_952164.1 ProteinModelPortal:Q74E53 GeneID:2688552
KEGG:gsu:GSU1111 PATRIC:22024984 ProtClustDB:PRK14463
BioCyc:GSUL243231:GH27-1106-MONOMER Uniprot:Q74E53
Length = 360
Score = 472 (171.2 bits), Expect = 7.1e-45, P = 7.1e-45
Identities = 122/310 (39%), Positives = 168/310 (54%)
Query: 66 STLH-SVVDSSDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQ 124
STL ++ S D T K L +L +G VE+V++ P R+TLCISSQ
Sbjct: 65 STLSPEALEISRDGTRKYLFRLDDGCSVESVLI--------------PEEDRNTLCISSQ 110
Query: 125 VGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSNIRNVVFMGMGEPLNNYAALVEA 184
VGC M C FC TGT NL++ EIV Q+ R +RN+VFMGMGEPL N ++ A
Sbjct: 111 VGCAMACEFCLTGTFRLTRNLTTAEIVNQVCAVQRDVPVRNIVFMGMGEPLANLDNVIRA 170
Query: 185 VRIMT---GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPA 241
++IM GL F S +RITVST G+V + + + +NLAVSL+A ++R +IMP
Sbjct: 171 LQIMLHDDGLQF--STRRITVSTAGLVPEMERLGRSVT-VNLAVSLNATTDELRDRIMPI 227
Query: 242 ARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPF 301
R +PL L++A + + ++KI IEY++L GVND A +L +LL +NLIPF
Sbjct: 228 NRKYPLAVLLDACRRFPLPGRRKITIEYVLLGGVNDTLDDAKRLVRLLSDIPSKINLIPF 287
Query: 302 NPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDKISAK 361
N S FR+ S D + F + L + R G DIS ACGQL L D +
Sbjct: 288 NEHEGCS-FRSPSQDAIDRFHRYLLDKH-FTVITRSSRGADISAACGQLKGKL-DALKPS 344
Query: 362 STPPVTDIED 371
++ D
Sbjct: 345 GAGKQIEVSD 354
>UNIPROTKB|Q8EC29 [details] [associations]
symbol:rlmN "Dual-specificity RNA methyltransferase RlmN"
species:211586 "Shewanella oneidensis MR-1" [GO:0003674
"molecular_function" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
HAMAP:MF_01849 InterPro:IPR004383 InterPro:IPR006638
InterPro:IPR007197 InterPro:IPR013785 Pfam:PF04055
PIRSF:PIRSF006004 SMART:SM00729 GO:GO:0005737 Gene3D:3.20.20.70
GO:GO:0046872 GO:GO:0051539 EMBL:AE014299 GenomeReviews:AE014299_GR
GO:GO:0008033 GO:GO:0001510 eggNOG:COG0820 KO:K06941 GO:GO:0070040
TIGRFAMs:TIGR00048 HOGENOM:HOG000217992 ProtClustDB:PRK11194
OMA:IYHFGVS RefSeq:NP_718869.1 ProteinModelPortal:Q8EC29
GeneID:1171000 KEGG:son:SO_3315 PATRIC:23526306 Uniprot:Q8EC29
Length = 373
Score = 469 (170.2 bits), Expect = 1.5e-44, P = 1.5e-44
Identities = 119/361 (32%), Positives = 188/361 (52%)
Query: 10 DGGIIRAEFEKAGIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLH 69
D +RA F G K + K++ +++E ++ L ++ + + +
Sbjct: 12 DRKAMRALFADLGEKPFRADQLMKWIYHFGVSDFEEMTNINKVLRQKLAARCEIVAPEIS 71
Query: 70 SVVDSSDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKM 129
S+D T K + + G VE V + P R+TLC+SSQVGC +
Sbjct: 72 GYQKSADG-TIKFAIHVGEGQEVETVYI--------------PEDDRATLCVSSQVGCAL 116
Query: 130 GCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN---------IRNVVFMGMGEPLNNYAA 180
C FC+T GF NL+ EIV Q+ S I NVV MGMGEPL N A
Sbjct: 117 ECTFCSTAQQGFNRNLTVSEIVGQIWRVSHFLGFAKETGERPITNVVMMGMGEPLLNLAN 176
Query: 181 LVEAVRIMTG-LPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIM 239
++ A+ IM F +S +R+T+ST G+V A++K D + LAVS+HAP ++R ++
Sbjct: 177 VIPAMDIMLDDFGFSLSKRRVTLSTSGVVPALDKL-GDALDVALAVSIHAPNDELRDILV 235
Query: 240 PAARAFPLEKLMNALKEY--QKNSQQ-KIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVV 296
P + +PL++ + ++ Y + N+ + ++ +EY+MLD +ND + AH+L +L++ V
Sbjct: 236 PVNKKYPLQEFLAGIRRYIAKSNANRGRVTVEYVMLDHINDSTEQAHELAQLMKDTPCKV 295
Query: 297 NLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPD 356
NLIPFNP S + SS+ ++ F K+L Y + VRK G DI ACGQL ++ D
Sbjct: 296 NLIPFNPYPG-SPYGRSSNSRIDRFSKVLM-EYGLTVIVRKTRGDDIDAACGQLAGDIRD 353
Query: 357 K 357
+
Sbjct: 354 R 354
>TIGR_CMR|SO_3315 [details] [associations]
symbol:SO_3315 "conserved hypothetical protein TIGR00048"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0003674 "molecular_function"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
HAMAP:MF_01849 InterPro:IPR004383 InterPro:IPR006638
InterPro:IPR007197 InterPro:IPR013785 Pfam:PF04055
PIRSF:PIRSF006004 SMART:SM00729 GO:GO:0005737 Gene3D:3.20.20.70
GO:GO:0046872 GO:GO:0051539 EMBL:AE014299 GenomeReviews:AE014299_GR
GO:GO:0008033 GO:GO:0001510 eggNOG:COG0820 KO:K06941 GO:GO:0070040
TIGRFAMs:TIGR00048 HOGENOM:HOG000217992 ProtClustDB:PRK11194
OMA:IYHFGVS RefSeq:NP_718869.1 ProteinModelPortal:Q8EC29
GeneID:1171000 KEGG:son:SO_3315 PATRIC:23526306 Uniprot:Q8EC29
Length = 373
Score = 469 (170.2 bits), Expect = 1.5e-44, P = 1.5e-44
Identities = 119/361 (32%), Positives = 188/361 (52%)
Query: 10 DGGIIRAEFEKAGIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLH 69
D +RA F G K + K++ +++E ++ L ++ + + +
Sbjct: 12 DRKAMRALFADLGEKPFRADQLMKWIYHFGVSDFEEMTNINKVLRQKLAARCEIVAPEIS 71
Query: 70 SVVDSSDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKM 129
S+D T K + + G VE V + P R+TLC+SSQVGC +
Sbjct: 72 GYQKSADG-TIKFAIHVGEGQEVETVYI--------------PEDDRATLCVSSQVGCAL 116
Query: 130 GCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN---------IRNVVFMGMGEPLNNYAA 180
C FC+T GF NL+ EIV Q+ S I NVV MGMGEPL N A
Sbjct: 117 ECTFCSTAQQGFNRNLTVSEIVGQIWRVSHFLGFAKETGERPITNVVMMGMGEPLLNLAN 176
Query: 181 LVEAVRIMTG-LPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIM 239
++ A+ IM F +S +R+T+ST G+V A++K D + LAVS+HAP ++R ++
Sbjct: 177 VIPAMDIMLDDFGFSLSKRRVTLSTSGVVPALDKL-GDALDVALAVSIHAPNDELRDILV 235
Query: 240 PAARAFPLEKLMNALKEY--QKNSQQ-KIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVV 296
P + +PL++ + ++ Y + N+ + ++ +EY+MLD +ND + AH+L +L++ V
Sbjct: 236 PVNKKYPLQEFLAGIRRYIAKSNANRGRVTVEYVMLDHINDSTEQAHELAQLMKDTPCKV 295
Query: 297 NLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPD 356
NLIPFNP S + SS+ ++ F K+L Y + VRK G DI ACGQL ++ D
Sbjct: 296 NLIPFNPYPG-SPYGRSSNSRIDRFSKVLM-EYGLTVIVRKTRGDDIDAACGQLAGDIRD 353
Query: 357 K 357
+
Sbjct: 354 R 354
>UNIPROTKB|Q9KTX3 [details] [associations]
symbol:rlmN "Dual-specificity RNA methyltransferase RlmN"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0003674 "molecular_function" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] HAMAP:MF_01849 InterPro:IPR004383 InterPro:IPR006638
InterPro:IPR007197 InterPro:IPR013785 Pfam:PF04055
PIRSF:PIRSF006004 SMART:SM00729 GO:GO:0005737 Gene3D:3.20.20.70
GO:GO:0046872 EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0051539
GO:GO:0008033 GO:GO:0001510 eggNOG:COG0820 KO:K06941 OMA:MACDFCA
GO:GO:0070040 TIGRFAMs:TIGR00048 ProtClustDB:PRK11194 PIR:D82283
RefSeq:NP_230406.1 ProteinModelPortal:Q9KTX3 DNASU:2615300
GeneID:2615300 KEGG:vch:VC0757 PATRIC:20080625 Uniprot:Q9KTX3
Length = 373
Score = 464 (168.4 bits), Expect = 5.0e-44, P = 5.0e-44
Identities = 106/259 (40%), Positives = 151/259 (58%)
Query: 112 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASR---LSN------ 162
P R+TLC+SSQVGC + C FC+T GF NL EI+ Q+ A+R L
Sbjct: 99 PEDDRATLCVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAREIGLEKETGRRP 158
Query: 163 IRNVVFMGMGEPLNNYAALVEAVRIMTG-LPFQVSPKRITVSTVGIVHAINKFHSDLPGL 221
I NVV MGMGEPL N L+ A+ IM L F +S +R+TVST G+V + + + +
Sbjct: 159 ITNVVMMGMGEPLLNMKNLIPALEIMLDDLGFGLSKRRVTVSTSGVVSGLEQMIGQID-V 217
Query: 222 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEY--QKNSQQ-KIFIEYIMLDGVNDE 278
LA+SLHAP +R +IMP + +E + ++ Y N+ + K+ +EY++LD VND
Sbjct: 218 ALAISLHAPNDKLRSEIMPINDRWNIEAFLEVVRRYIASSNANRGKVTVEYVLLDHVNDG 277
Query: 279 EQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQ 338
+HAH+L +LL+ +NLIPFNP S ++ S+ ++ FQK L Y T+RK
Sbjct: 278 TEHAHELAELLKGTPCKINLIPFNPYPG-SPYKKPSNSRIDRFQKTLM-QYEHTVTIRKT 335
Query: 339 MGQDISGACGQLVVNLPDK 357
G DI ACGQLV ++ D+
Sbjct: 336 RGDDIDAACGQLVGDVIDR 354
>TIGR_CMR|VC_0757 [details] [associations]
symbol:VC_0757 "conserved hypothetical protein" species:686
"Vibrio cholerae O1 biovar El Tor" [GO:0003674 "molecular_function"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0008150 "biological_process" evidence=ND] HAMAP:MF_01849
InterPro:IPR004383 InterPro:IPR006638 InterPro:IPR007197
InterPro:IPR013785 Pfam:PF04055 PIRSF:PIRSF006004 SMART:SM00729
GO:GO:0005737 Gene3D:3.20.20.70 GO:GO:0046872 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0051539 GO:GO:0008033 GO:GO:0001510
eggNOG:COG0820 KO:K06941 OMA:MACDFCA GO:GO:0070040
TIGRFAMs:TIGR00048 ProtClustDB:PRK11194 PIR:D82283
RefSeq:NP_230406.1 ProteinModelPortal:Q9KTX3 DNASU:2615300
GeneID:2615300 KEGG:vch:VC0757 PATRIC:20080625 Uniprot:Q9KTX3
Length = 373
Score = 464 (168.4 bits), Expect = 5.0e-44, P = 5.0e-44
Identities = 106/259 (40%), Positives = 151/259 (58%)
Query: 112 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASR---LSN------ 162
P R+TLC+SSQVGC + C FC+T GF NL EI+ Q+ A+R L
Sbjct: 99 PEDDRATLCVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAREIGLEKETGRRP 158
Query: 163 IRNVVFMGMGEPLNNYAALVEAVRIMTG-LPFQVSPKRITVSTVGIVHAINKFHSDLPGL 221
I NVV MGMGEPL N L+ A+ IM L F +S +R+TVST G+V + + + +
Sbjct: 159 ITNVVMMGMGEPLLNMKNLIPALEIMLDDLGFGLSKRRVTVSTSGVVSGLEQMIGQID-V 217
Query: 222 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEY--QKNSQQ-KIFIEYIMLDGVNDE 278
LA+SLHAP +R +IMP + +E + ++ Y N+ + K+ +EY++LD VND
Sbjct: 218 ALAISLHAPNDKLRSEIMPINDRWNIEAFLEVVRRYIASSNANRGKVTVEYVLLDHVNDG 277
Query: 279 EQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQ 338
+HAH+L +LL+ +NLIPFNP S ++ S+ ++ FQK L Y T+RK
Sbjct: 278 TEHAHELAELLKGTPCKINLIPFNPYPG-SPYKKPSNSRIDRFQKTLM-QYEHTVTIRKT 335
Query: 339 MGQDISGACGQLVVNLPDK 357
G DI ACGQLV ++ D+
Sbjct: 336 RGDDIDAACGQLVGDVIDR 354
>UNIPROTKB|Q83C77 [details] [associations]
symbol:rlmN "Dual-specificity RNA methyltransferase RlmN"
species:227377 "Coxiella burnetii RSA 493" [GO:0003674
"molecular_function" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] HAMAP:MF_01849 InterPro:IPR004383 InterPro:IPR006638
InterPro:IPR007197 InterPro:IPR013785 Pfam:PF04055
PIRSF:PIRSF006004 SMART:SM00729 GO:GO:0005737 Gene3D:3.20.20.70
GO:GO:0046872 GO:GO:0051539 EMBL:AE016828 GenomeReviews:AE016828_GR
GO:GO:0008033 GO:GO:0001510 eggNOG:COG0820 KO:K06941 OMA:MACDFCA
GO:GO:0070040 TIGRFAMs:TIGR00048 HOGENOM:HOG000217992
RefSeq:NP_820246.1 ProteinModelPortal:Q83C77 GeneID:1209157
KEGG:cbu:CBU_1252 PATRIC:17931237 ProtClustDB:CLSK914643
BioCyc:CBUR227377:GJ7S-1238-MONOMER Uniprot:Q83C77
Length = 370
Score = 463 (168.0 bits), Expect = 6.4e-44, P = 6.4e-44
Identities = 103/252 (40%), Positives = 153/252 (60%)
Query: 112 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN----IRNVV 167
P R TLC+SSQVGC + C+FCATG GF NL+ EI+ Q+ A+RL I NVV
Sbjct: 98 PDRKRGTLCVSSQVGCALNCSFCATGKEGFNRNLTLAEIIGQVWLAARLLKSPYKITNVV 157
Query: 168 FMGMGEPLNNYAALVEAVRIMT-GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVS 226
MGMGEPL NY A+V A+ +M + +S R+T+ST G++ A+ + + P ++LAVS
Sbjct: 158 MMGMGEPLLNYEAVVAAMHLMMHDHAYGLSKYRVTLSTSGVIPAMRRLREESP-VSLAVS 216
Query: 227 LHAPVQDVRCQIMPAARAFPLEKLMNALKEY-QKNSQQKIFIEYIMLDGVNDEEQHAHQL 285
LHAP +R ++P + + L++L+ ++Y + S++ + EY+M++G+ND A QL
Sbjct: 217 LHAPNDALRNVLIPLNKKYSLDQLIPLCRDYYSRGSKRCVTFEYVMIEGMNDRLIDAKQL 276
Query: 286 GKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISG 345
+LL +NLIPFN + +R S++ +S FQK L + T VR+ G DI+G
Sbjct: 277 IRLLADVPCKINLIPFNSFQGTA-YRCSTESAISVFQKCLMDA-GFNTRVRRTRGDDIAG 334
Query: 346 ACGQLVVNLPDK 357
ACGQL D+
Sbjct: 335 ACGQLAGQFHDR 346
>TIGR_CMR|CBU_1252 [details] [associations]
symbol:CBU_1252 "radical SAM enzyme, Cfr family"
species:227377 "Coxiella burnetii RSA 493" [GO:0008150
"biological_process" evidence=ND] [GO:0003674 "molecular_function"
evidence=ND] HAMAP:MF_01849 InterPro:IPR004383 InterPro:IPR006638
InterPro:IPR007197 InterPro:IPR013785 Pfam:PF04055
PIRSF:PIRSF006004 SMART:SM00729 GO:GO:0005737 Gene3D:3.20.20.70
GO:GO:0046872 GO:GO:0051539 EMBL:AE016828 GenomeReviews:AE016828_GR
GO:GO:0008033 GO:GO:0001510 eggNOG:COG0820 KO:K06941 OMA:MACDFCA
GO:GO:0070040 TIGRFAMs:TIGR00048 HOGENOM:HOG000217992
RefSeq:NP_820246.1 ProteinModelPortal:Q83C77 GeneID:1209157
KEGG:cbu:CBU_1252 PATRIC:17931237 ProtClustDB:CLSK914643
BioCyc:CBUR227377:GJ7S-1238-MONOMER Uniprot:Q83C77
Length = 370
Score = 463 (168.0 bits), Expect = 6.4e-44, P = 6.4e-44
Identities = 103/252 (40%), Positives = 153/252 (60%)
Query: 112 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN----IRNVV 167
P R TLC+SSQVGC + C+FCATG GF NL+ EI+ Q+ A+RL I NVV
Sbjct: 98 PDRKRGTLCVSSQVGCALNCSFCATGKEGFNRNLTLAEIIGQVWLAARLLKSPYKITNVV 157
Query: 168 FMGMGEPLNNYAALVEAVRIMT-GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVS 226
MGMGEPL NY A+V A+ +M + +S R+T+ST G++ A+ + + P ++LAVS
Sbjct: 158 MMGMGEPLLNYEAVVAAMHLMMHDHAYGLSKYRVTLSTSGVIPAMRRLREESP-VSLAVS 216
Query: 227 LHAPVQDVRCQIMPAARAFPLEKLMNALKEY-QKNSQQKIFIEYIMLDGVNDEEQHAHQL 285
LHAP +R ++P + + L++L+ ++Y + S++ + EY+M++G+ND A QL
Sbjct: 217 LHAPNDALRNVLIPLNKKYSLDQLIPLCRDYYSRGSKRCVTFEYVMIEGMNDRLIDAKQL 276
Query: 286 GKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISG 345
+LL +NLIPFN + +R S++ +S FQK L + T VR+ G DI+G
Sbjct: 277 IRLLADVPCKINLIPFNSFQGTA-YRCSTESAISVFQKCLMDA-GFNTRVRRTRGDDIAG 334
Query: 346 ACGQLVVNLPDK 357
ACGQL D+
Sbjct: 335 ACGQLAGQFHDR 346
>UNIPROTKB|Q47WB7 [details] [associations]
symbol:rlmN "Dual-specificity RNA methyltransferase RlmN"
species:167879 "Colwellia psychrerythraea 34H" [GO:0008150
"biological_process" evidence=ND] HAMAP:MF_01849 InterPro:IPR004383
InterPro:IPR006638 InterPro:IPR007197 InterPro:IPR013785
Pfam:PF04055 PIRSF:PIRSF006004 SMART:SM00729 GO:GO:0005737
Gene3D:3.20.20.70 GO:GO:0046872 GO:GO:0051539 EMBL:CP000083
GenomeReviews:CP000083_GR GO:GO:0008033 GO:GO:0001510
eggNOG:COG0820 KO:K06941 OMA:MACDFCA GO:GO:0070040
TIGRFAMs:TIGR00048 RefSeq:YP_270905.1 ProteinModelPortal:Q47WB7
STRING:Q47WB7 GeneID:3518965 KEGG:cps:CPS_4255 PATRIC:21471375
HOGENOM:HOG000217992 ProtClustDB:PRK11194
BioCyc:CPSY167879:GI48-4265-MONOMER Uniprot:Q47WB7
Length = 386
Score = 462 (167.7 bits), Expect = 8.1e-44, P = 8.1e-44
Identities = 122/361 (33%), Positives = 189/361 (52%)
Query: 9 FDGGIIRAEFEKAGIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTL 68
FD +R E G K I K++ ++++ ++ L+ +++
Sbjct: 13 FDHKSMREYLESIGEKPFRADQIMKWIYHFGYSDFEQMTNINKKLREKLQRNCI-ISAPD 71
Query: 69 HSVVDSSDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCK 128
S S+D T K +KL+ G VE V + P R+TLC+SSQVGC
Sbjct: 72 ISEKQVSEDGTIKYALKLEGGQEVETVWI--------------PENDRATLCVSSQVGCA 117
Query: 129 MGCNFCATGTMGFKSNLSSGEIVEQL------VHASRLSNIR---NVVFMGMGEPLNNYA 179
+ C FCAT GF NLS EI+ Q+ + A+R++ R N+V MGMGEPL N
Sbjct: 118 LECTFCATAQQGFNRNLSMAEIIGQVWRVANDIGATRIAGTRPITNIVMMGMGEPLLNMK 177
Query: 180 ALVEAVRIMTG-LPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQI 238
L+ A+ M L + +S +R+TVST G+V A++ + + LA+S+HAP +R ++
Sbjct: 178 NLIPALDTMLNDLGYGLSKRRVTVSTSGVVPALDMLKAKID-CALAISIHAPNNKLRDEL 236
Query: 239 MPAARAFPLEKLMNALKEYQKNSQ--QKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVV 296
+P + +PLE + A Y + S+ ++ IEY+MLD VND AH+L L+ +
Sbjct: 237 VPINKKYPLEDFIAAAGRYIEGSKANKQATIEYVMLDHVNDSTDQAHELAHALKGLPSKI 296
Query: 297 NLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPD 356
NLIPFNP S + SS+ ++ F K+L+ SY + R+ G+DI ACGQL ++ D
Sbjct: 297 NLIPFNPYPG-SPYSRSSNSRIDRFDKVLQ-SYGLTVITRRTRGEDIDAACGQLAGDVFD 354
Query: 357 K 357
+
Sbjct: 355 R 355
>TIGR_CMR|CPS_4255 [details] [associations]
symbol:CPS_4255 "radical SAM enzyme, Cfr family"
species:167879 "Colwellia psychrerythraea 34H" [GO:0003824
"catalytic activity" evidence=ISS] [GO:0008150 "biological_process"
evidence=ND] HAMAP:MF_01849 InterPro:IPR004383 InterPro:IPR006638
InterPro:IPR007197 InterPro:IPR013785 Pfam:PF04055
PIRSF:PIRSF006004 SMART:SM00729 GO:GO:0005737 Gene3D:3.20.20.70
GO:GO:0046872 GO:GO:0051539 EMBL:CP000083 GenomeReviews:CP000083_GR
GO:GO:0008033 GO:GO:0001510 eggNOG:COG0820 KO:K06941 OMA:MACDFCA
GO:GO:0070040 TIGRFAMs:TIGR00048 RefSeq:YP_270905.1
ProteinModelPortal:Q47WB7 STRING:Q47WB7 GeneID:3518965
KEGG:cps:CPS_4255 PATRIC:21471375 HOGENOM:HOG000217992
ProtClustDB:PRK11194 BioCyc:CPSY167879:GI48-4265-MONOMER
Uniprot:Q47WB7
Length = 386
Score = 462 (167.7 bits), Expect = 8.1e-44, P = 8.1e-44
Identities = 122/361 (33%), Positives = 189/361 (52%)
Query: 9 FDGGIIRAEFEKAGIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTL 68
FD +R E G K I K++ ++++ ++ L+ +++
Sbjct: 13 FDHKSMREYLESIGEKPFRADQIMKWIYHFGYSDFEQMTNINKKLREKLQRNCI-ISAPD 71
Query: 69 HSVVDSSDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCK 128
S S+D T K +KL+ G VE V + P R+TLC+SSQVGC
Sbjct: 72 ISEKQVSEDGTIKYALKLEGGQEVETVWI--------------PENDRATLCVSSQVGCA 117
Query: 129 MGCNFCATGTMGFKSNLSSGEIVEQL------VHASRLSNIR---NVVFMGMGEPLNNYA 179
+ C FCAT GF NLS EI+ Q+ + A+R++ R N+V MGMGEPL N
Sbjct: 118 LECTFCATAQQGFNRNLSMAEIIGQVWRVANDIGATRIAGTRPITNIVMMGMGEPLLNMK 177
Query: 180 ALVEAVRIMTG-LPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQI 238
L+ A+ M L + +S +R+TVST G+V A++ + + LA+S+HAP +R ++
Sbjct: 178 NLIPALDTMLNDLGYGLSKRRVTVSTSGVVPALDMLKAKID-CALAISIHAPNNKLRDEL 236
Query: 239 MPAARAFPLEKLMNALKEYQKNSQ--QKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVV 296
+P + +PLE + A Y + S+ ++ IEY+MLD VND AH+L L+ +
Sbjct: 237 VPINKKYPLEDFIAAAGRYIEGSKANKQATIEYVMLDHVNDSTDQAHELAHALKGLPSKI 296
Query: 297 NLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPD 356
NLIPFNP S + SS+ ++ F K+L+ SY + R+ G+DI ACGQL ++ D
Sbjct: 297 NLIPFNPYPG-SPYSRSSNSRIDRFDKVLQ-SYGLTVITRRTRGEDIDAACGQLAGDVFD 354
Query: 357 K 357
+
Sbjct: 355 R 355
>TAIR|locus:2195608 [details] [associations]
symbol:AT1G60230 species:3702 "Arabidopsis thaliana"
[GO:0003824 "catalytic activity" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0006364 "rRNA processing"
evidence=IEA] [GO:0008173 "RNA methyltransferase activity"
evidence=IEA] [GO:0009507 "chloroplast" evidence=ISM] [GO:0051536
"iron-sulfur cluster binding" evidence=IEA] HAMAP:MF_01849
InterPro:IPR004383 InterPro:IPR006638 InterPro:IPR007197
InterPro:IPR013785 Pfam:PF04055 SMART:SM00729 EMBL:CP002684
GO:GO:0005737 Gene3D:3.20.20.70 GO:GO:0051536 GO:GO:0006364
GO:GO:0008173 GO:GO:0001510 TIGRFAMs:TIGR00048 HOGENOM:HOG000217992
OMA:IYHFGVS UniGene:At.43275 UniGene:At.64986 EMBL:AY054695
EMBL:AY081476 IPI:IPI00549143 RefSeq:NP_564755.1
ProteinModelPortal:Q93XX3 SMR:Q93XX3 EnsemblPlants:AT1G60230.1
GeneID:842318 KEGG:ath:AT1G60230 TAIR:At1g60230 InParanoid:Q93XX3
PhylomeDB:Q93XX3 ProtClustDB:CLSN2688935 ArrayExpress:Q93XX3
Genevestigator:Q93XX3 Uniprot:Q93XX3
Length = 458
Score = 461 (167.3 bits), Expect = 1.0e-43, P = 1.0e-43
Identities = 117/289 (40%), Positives = 162/289 (56%)
Query: 72 VDSSDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGC 131
+ S+ D T K+L L +G +E V++ D R+T+C+SSQVGC M C
Sbjct: 164 IRSASDGTRKILFTLDDGLVIETVVIPCDRG-------------RTTVCVSSQVGCAMNC 210
Query: 132 NFCATGTMGFKSNLSSGEIVEQLVHASRL-----SNIRNVVFMGMGEPLNNYAALVEAVR 186
FC TG MG K NL++ EIVEQ V+A RL +I NVVFMGMGEP +N +++A
Sbjct: 211 QFCYTGRMGLKRNLTTAEIVEQAVYARRLLSHEVGSITNVVFMGMGEPFHNIDNVIKAAN 270
Query: 187 IMT---GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAAR 243
IM GL F SP+++TVST G+V + +F + LAVSL+A +VR IMP R
Sbjct: 271 IMVDENGLHF--SPRKVTVSTSGLVPQLKRFLRE-SNCALAVSLNATTDEVRNWIMPINR 327
Query: 244 AFPLEKLMNALKE-YQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFN 302
+ L L+ L+E + K+ EY+ML GVND A +L +L++ +NLI FN
Sbjct: 328 KYKLSLLLETLREGLSSRHKYKVLFEYVMLAGVNDSMDDARRLVELVQGIPCKINLIQFN 387
Query: 303 PIGSVSQFRTSSDDKVSSFQKIL-RGSYNIRTTVRKQMGQDISGACGQL 350
P S SQF + +DK+ F+ +L G + +R G D ACGQL
Sbjct: 388 P-HSGSQFIQTEEDKMIKFRNVLAEGGCTV--LMRFSRGNDQMAACGQL 433
>UNIPROTKB|Q81WH4 [details] [associations]
symbol:rlmN "Probable dual-specificity RNA
methyltransferase RlmN" species:1392 "Bacillus anthracis"
[GO:0003674 "molecular_function" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] HAMAP:MF_01849 InterPro:IPR004383 InterPro:IPR006638
InterPro:IPR007197 InterPro:IPR013785 Pfam:PF04055
PIRSF:PIRSF006004 SMART:SM00729 GO:GO:0005737 Gene3D:3.20.20.70
GO:GO:0046872 EMBL:AE016879 EMBL:AE017334 EMBL:AE017225
GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0051539 GO:GO:0008033 GO:GO:0001510
RefSeq:NP_846244.1 RefSeq:YP_020642.1 RefSeq:YP_029966.1
ProteinModelPortal:Q81WH4 DNASU:1086738
EnsemblBacteria:EBBACT00000012863 EnsemblBacteria:EBBACT00000014022
EnsemblBacteria:EBBACT00000019317 GeneID:1086738 GeneID:2815920
GeneID:2848017 KEGG:ban:BA_4002 KEGG:bar:GBAA_4002 KEGG:bat:BAS3715
eggNOG:COG0820 HOGENOM:HOG000217991 KO:K06941 OMA:MACDFCA
ProtClustDB:PRK14455 BioCyc:BANT260799:GJAJ-3773-MONOMER
BioCyc:BANT261594:GJ7F-3890-MONOMER GO:GO:0070040
TIGRFAMs:TIGR00048 Uniprot:Q81WH4
Length = 362
Score = 460 (167.0 bits), Expect = 1.3e-43, P = 1.3e-43
Identities = 114/328 (34%), Positives = 181/328 (55%)
Query: 32 WKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHSVV-DSSDDVTTKLLVKLQNGG 90
W Y N +++ +L L + F +TL+++V +S D T K L +L +G
Sbjct: 47 WLYKKRVKN--YEDMSNLSKGLREKLSNSFD--ITTLNTLVKQTSSDGTIKFLFQLYDGY 102
Query: 91 FVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEI 150
+E V+MR++ Y +++C+++QVGC++GC FCA+ G K NL +GEI
Sbjct: 103 SIETVLMRHE-----YG---------NSICVTTQVGCRIGCTFCASTLGGLKRNLEAGEI 148
Query: 151 VEQLVHASRL-----SNIRNVVFMGMGEPLNNYAALVEAVRIMT---GLPFQVSPKRITV 202
V Q+V R + ++V MG+GEP +NY L+ +RI+ GL + + +TV
Sbjct: 149 VAQVVEVQRALDESEERVSSLVVMGIGEPFDNYDNLMGFLRIINHEKGL--HIGARHMTV 206
Query: 203 STVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQ 262
ST GI+ I KF + +N A+SLHAP ++R ++MP RA+ L LM A+K Y +
Sbjct: 207 STSGIIPKIYKFAEEDLQINFAISLHAPNSELRSKLMPINRAYKLPDLMEAIKYYVNRTG 266
Query: 263 QKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQ 322
++I EY + G ND+ +HA +L LL+ + VNLIP N + RT + ++ F+
Sbjct: 267 RRITFEYGLFGGENDQVEHAEELAALLKGVKCHVNLIPVNYVPERDYVRTPRE-QIFLFE 325
Query: 323 KILRGSYNIRTTVRKQMGQDISGACGQL 350
K L+ + T+R++ G DI ACGQL
Sbjct: 326 KTLKDR-GVNVTIRREQGHDIDAACGQL 352
>TIGR_CMR|BA_4002 [details] [associations]
symbol:BA_4002 "conserved hypothetical protein TIGR00048"
species:198094 "Bacillus anthracis str. Ames" [GO:0003674
"molecular_function" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
HAMAP:MF_01849 InterPro:IPR004383 InterPro:IPR006638
InterPro:IPR007197 InterPro:IPR013785 Pfam:PF04055
PIRSF:PIRSF006004 SMART:SM00729 GO:GO:0005737 Gene3D:3.20.20.70
GO:GO:0046872 EMBL:AE016879 EMBL:AE017334 EMBL:AE017225
GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0051539 GO:GO:0008033 GO:GO:0001510
RefSeq:NP_846244.1 RefSeq:YP_020642.1 RefSeq:YP_029966.1
ProteinModelPortal:Q81WH4 DNASU:1086738
EnsemblBacteria:EBBACT00000012863 EnsemblBacteria:EBBACT00000014022
EnsemblBacteria:EBBACT00000019317 GeneID:1086738 GeneID:2815920
GeneID:2848017 KEGG:ban:BA_4002 KEGG:bar:GBAA_4002 KEGG:bat:BAS3715
eggNOG:COG0820 HOGENOM:HOG000217991 KO:K06941 OMA:MACDFCA
ProtClustDB:PRK14455 BioCyc:BANT260799:GJAJ-3773-MONOMER
BioCyc:BANT261594:GJ7F-3890-MONOMER GO:GO:0070040
TIGRFAMs:TIGR00048 Uniprot:Q81WH4
Length = 362
Score = 460 (167.0 bits), Expect = 1.3e-43, P = 1.3e-43
Identities = 114/328 (34%), Positives = 181/328 (55%)
Query: 32 WKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHSVV-DSSDDVTTKLLVKLQNGG 90
W Y N +++ +L L + F +TL+++V +S D T K L +L +G
Sbjct: 47 WLYKKRVKN--YEDMSNLSKGLREKLSNSFD--ITTLNTLVKQTSSDGTIKFLFQLYDGY 102
Query: 91 FVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEI 150
+E V+MR++ Y +++C+++QVGC++GC FCA+ G K NL +GEI
Sbjct: 103 SIETVLMRHE-----YG---------NSICVTTQVGCRIGCTFCASTLGGLKRNLEAGEI 148
Query: 151 VEQLVHASRL-----SNIRNVVFMGMGEPLNNYAALVEAVRIMT---GLPFQVSPKRITV 202
V Q+V R + ++V MG+GEP +NY L+ +RI+ GL + + +TV
Sbjct: 149 VAQVVEVQRALDESEERVSSLVVMGIGEPFDNYDNLMGFLRIINHEKGL--HIGARHMTV 206
Query: 203 STVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQ 262
ST GI+ I KF + +N A+SLHAP ++R ++MP RA+ L LM A+K Y +
Sbjct: 207 STSGIIPKIYKFAEEDLQINFAISLHAPNSELRSKLMPINRAYKLPDLMEAIKYYVNRTG 266
Query: 263 QKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQ 322
++I EY + G ND+ +HA +L LL+ + VNLIP N + RT + ++ F+
Sbjct: 267 RRITFEYGLFGGENDQVEHAEELAALLKGVKCHVNLIPVNYVPERDYVRTPRE-QIFLFE 325
Query: 323 KILRGSYNIRTTVRKQMGQDISGACGQL 350
K L+ + T+R++ G DI ACGQL
Sbjct: 326 KTLKDR-GVNVTIRREQGHDIDAACGQL 352
>UNIPROTKB|O83107 [details] [associations]
symbol:rlmN "Probable dual-specificity RNA
methyltransferase RlmN" species:243276 "Treponema pallidum subsp.
pallidum str. Nichols" [GO:0005515 "protein binding" evidence=IPI]
HAMAP:MF_01849 InterPro:IPR004383 InterPro:IPR006638
InterPro:IPR007197 InterPro:IPR013785 Pfam:PF04055
PIRSF:PIRSF006004 SMART:SM00729 GO:GO:0005737 Gene3D:3.20.20.70
GO:GO:0046872 GO:GO:0051539 GO:GO:0008033 GO:GO:0001510
EMBL:AE000520 GenomeReviews:AE000520_GR eggNOG:COG0820 KO:K06941
GO:GO:0070040 TIGRFAMs:TIGR00048 PIR:D71371 RefSeq:NP_218508.1
ProteinModelPortal:O83107 IntAct:O83107 GeneID:2611395
KEGG:tpa:TP0068 PATRIC:20530073 OMA:EMVFIPD ProtClustDB:CLSK218510
Uniprot:O83107
Length = 340
Score = 424 (154.3 bits), Expect = 8.7e-40, P = 8.7e-40
Identities = 96/237 (40%), Positives = 137/237 (57%)
Query: 116 RSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASR-LSNIRNVVFMGMGEP 174
R T C+S QVGC M C FC TG +GF NLS+ EIVEQ +H R + + NVVFMGMGEP
Sbjct: 100 RKTACLSCQVGCPMACAFCQTGQLGFARNLSASEIVEQFLHLERCVGTLDNVVFMGMGEP 159
Query: 175 LNNYAALVEAVRIMTGLPFQ-VSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQD 233
+ N A+ A+ I++ + +S KRIT+ST G I + LAVSL
Sbjct: 160 MLNLDAVCRAIEILSHPQGRDLSEKRITISTSGHCRGIYSLADRALQVRLAVSLTTANAP 219
Query: 234 VRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQ 293
+R ++MP A L KL +A++ + + S +++ +E ++ GVN E+HA ++
Sbjct: 220 LRARLMPRAAHDSLAKLKSAIRYFNEKSGKRVTLELALMRGVNTSERHAQEVIDFAHGLN 279
Query: 294 VVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 350
V VNLIP+NP+ S+ F T + +V+ F+ +L + I T R Q G I GACGQL
Sbjct: 280 VHVNLIPWNPVASI-HFETPREVEVAHFEALLMRA-RIPVTRRYQRGNGIGGACGQL 334
>UNIPROTKB|P0A644 [details] [associations]
symbol:rlmN "Probable dual-specificity RNA
methyltransferase RlmN" species:1773 "Mycobacterium tuberculosis"
[GO:0005618 "cell wall" evidence=IDA] [GO:0005886 "plasma membrane"
evidence=IDA] HAMAP:MF_01849 InterPro:IPR004383 InterPro:IPR006638
InterPro:IPR007197 InterPro:IPR013785 Pfam:PF04055
PIRSF:PIRSF006004 SMART:SM00729 GO:GO:0005886 GO:GO:0005737
GO:GO:0005618 Gene3D:3.20.20.70 EMBL:AE000516
GenomeReviews:AE000516_GR GO:GO:0046872 GO:GO:0051539 GO:GO:0008033
EMBL:BX842581 GO:GO:0001510 eggNOG:COG0820 HOGENOM:HOG000217991
KO:K06941 GO:GO:0070040 TIGRFAMs:TIGR00048 PIR:B70924 PIR:C70924
RefSeq:NP_217395.1 RefSeq:NP_217396.1 RefSeq:NP_337458.1
ProteinModelPortal:P0A644 SMR:P0A644 PRIDE:P0A644
EnsemblBacteria:EBMYCT00000003622 EnsemblBacteria:EBMYCT00000071511
GeneID:887156 GeneID:887810 GeneID:925333 KEGG:mtc:MT2947
KEGG:mtu:Rv2879c KEGG:mtu:Rv2880c TubercuList:Rv2879c
TubercuList:Rv2880c ProtClustDB:CLSK792141 Uniprot:P0A644
Length = 364
Score = 422 (153.6 bits), Expect = 1.4e-39, P = 1.4e-39
Identities = 116/318 (36%), Positives = 164/318 (51%)
Query: 45 EFPSLPSAAYSLLRSKFKPLTSTLHSVVDSSDDVTTKLLVKLQNGGFVEAVIMRYDSSLG 104
+ LP+A + P T + + T K L + +G E+V+MRY
Sbjct: 58 QMTDLPAAVRDRIAGAMFPNLLTASADITCDAGQTRKTLWRAVDGTMFESVLMRY----- 112
Query: 105 KYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQL-VHASRLSN- 162
PR R+T+CISSQ GC M C FCATG G NLS+ EI+EQ+ A+ L +
Sbjct: 113 -----PR----RNTVCISSQAGCGMACPFCATGQGGLTRNLSTAEILEQVRAGAAALRDD 163
Query: 163 ----IRNVVFMGMGEPLNNYAALVEAVRIMTGLP---FQVSPKRITVSTVGIVHAINKFH 215
+ NVVFMGMGEPL NYA ++ AV+ +T P F +S + +TVSTVG+ AI
Sbjct: 164 FGDRLSNVVFMGMGEPLANYARVLAAVQRITARPPSGFGISARAVTVSTVGLAPAIRNLA 223
Query: 216 SDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGV 275
G+ LA+SLHAP +R ++P + + + ++A + Y + +++ IEY ++ V
Sbjct: 224 DARLGVTLALSLHAPDDGLRDTLVPVNNRWRISEALDAARYYANVTGRRVSIEYALIRDV 283
Query: 276 NDEEQHAHQLGKLLETFQ---VVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIR 332
ND+ A LGK L VNLIP NP S + S F K +R +
Sbjct: 284 NDQPWRADLLGKRLHRVLGPLAHVNLIPLNPTPG-SDWDASPKPVEREFVKRVRAK-GVS 341
Query: 333 TTVRKQMGQDISGACGQL 350
TVR G++IS ACGQL
Sbjct: 342 CTVRDTRGREISAACGQL 359
>GENEDB_PFALCIPARUM|PF14_0066 [details] [associations]
symbol:PF14_0066 "radical SAM protein,
putative" species:5833 "Plasmodium falciparum" [GO:0003674
"molecular_function" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR004383 InterPro:IPR006638
InterPro:IPR007197 InterPro:IPR013785 Pfam:PF04055
PIRSF:PIRSF006004 SMART:SM00729 GO:GO:0005737 Gene3D:3.20.20.70
GO:GO:0051536 EMBL:AE014187 GO:GO:0006364 GO:GO:0008173
GO:GO:0001510 HOGENOM:HOG000217991 TIGRFAMs:TIGR00048
RefSeq:XP_001348239.2 ProteinModelPortal:Q8IM25
EnsemblProtists:PF14_0066:mRNA GeneID:811648 KEGG:pfa:PF14_0066
EuPathDB:PlasmoDB:PF3D7_1406900 KO:K15632 ProtClustDB:CLSZ2428899
Uniprot:Q8IM25
Length = 362
Score = 405 (147.6 bits), Expect = 8.9e-38, P = 8.9e-38
Identities = 92/254 (36%), Positives = 143/254 (56%)
Query: 114 GPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVH-ASRLSNIRNVVFMGMG 172
G +LCISSQ+GC GC FCATG +G K L EI +QL++ S+ +I+N+ FMGMG
Sbjct: 96 GSHKSLCISSQIGCSFGCKFCATGQIGIKRQLDIDEITDQLLYFQSKGVDIKNISFMGMG 155
Query: 173 EPLNNYAALVEAVRIMTGLP-FQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPV 231
EPL N + ++++ F +S +RI +STVG++ I K ++ P +NLA SLH+P
Sbjct: 156 EPLAN-PYVFDSIQFFNDNNLFSISNRRINISTVGLLPGIKKLNNIFPQVNLAFSLHSPF 214
Query: 232 QDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLG----K 287
+ R Q++P + FP ++ + L E + ++++I YI++ +ND + HA L K
Sbjct: 215 TEERDQLVPINKLFPFNEVFDLLDERIAKTGRRVWISYILIKNLNDSKDHAEALSDHICK 274
Query: 288 LLETFQVVVN--LIPFNPIGSVSQ-FRTSSD-DKVSSFQKILRGSYNIRTTVRKQMGQDI 343
+ + N LIP+N +V + F D +K+ F+KIL+ + I R G I
Sbjct: 275 RPNNIRYLYNVCLIPYNKAKNVDENFHRLDDAEKILQFEKILKKN-GISFFYRNSFGYSI 333
Query: 344 SGACGQLVVNLPDK 357
ACGQL + K
Sbjct: 334 DAACGQLYADYEPK 347
>UNIPROTKB|Q8IM25 [details] [associations]
symbol:PF14_0066 "Radical SAM protein, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0003674
"molecular_function" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR004383 InterPro:IPR006638
InterPro:IPR007197 InterPro:IPR013785 Pfam:PF04055
PIRSF:PIRSF006004 SMART:SM00729 GO:GO:0005737 Gene3D:3.20.20.70
GO:GO:0051536 EMBL:AE014187 GO:GO:0006364 GO:GO:0008173
GO:GO:0001510 HOGENOM:HOG000217991 TIGRFAMs:TIGR00048
RefSeq:XP_001348239.2 ProteinModelPortal:Q8IM25
EnsemblProtists:PF14_0066:mRNA GeneID:811648 KEGG:pfa:PF14_0066
EuPathDB:PlasmoDB:PF3D7_1406900 KO:K15632 ProtClustDB:CLSZ2428899
Uniprot:Q8IM25
Length = 362
Score = 405 (147.6 bits), Expect = 8.9e-38, P = 8.9e-38
Identities = 92/254 (36%), Positives = 143/254 (56%)
Query: 114 GPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVH-ASRLSNIRNVVFMGMG 172
G +LCISSQ+GC GC FCATG +G K L EI +QL++ S+ +I+N+ FMGMG
Sbjct: 96 GSHKSLCISSQIGCSFGCKFCATGQIGIKRQLDIDEITDQLLYFQSKGVDIKNISFMGMG 155
Query: 173 EPLNNYAALVEAVRIMTGLP-FQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPV 231
EPL N + ++++ F +S +RI +STVG++ I K ++ P +NLA SLH+P
Sbjct: 156 EPLAN-PYVFDSIQFFNDNNLFSISNRRINISTVGLLPGIKKLNNIFPQVNLAFSLHSPF 214
Query: 232 QDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLG----K 287
+ R Q++P + FP ++ + L E + ++++I YI++ +ND + HA L K
Sbjct: 215 TEERDQLVPINKLFPFNEVFDLLDERIAKTGRRVWISYILIKNLNDSKDHAEALSDHICK 274
Query: 288 LLETFQVVVN--LIPFNPIGSVSQ-FRTSSD-DKVSSFQKILRGSYNIRTTVRKQMGQDI 343
+ + N LIP+N +V + F D +K+ F+KIL+ + I R G I
Sbjct: 275 RPNNIRYLYNVCLIPYNKAKNVDENFHRLDDAEKILQFEKILKKN-GISFFYRNSFGYSI 333
Query: 344 SGACGQLVVNLPDK 357
ACGQL + K
Sbjct: 334 DAACGQLYADYEPK 347
>TIGR_CMR|SPO_3346 [details] [associations]
symbol:SPO_3346 "radical SAM enzyme, Cfr family"
species:246200 "Ruegeria pomeroyi DSS-3" [GO:0003824 "catalytic
activity" evidence=ISS] [GO:0008152 "metabolic process"
evidence=ISS] HAMAP:MF_01849 InterPro:IPR004383 InterPro:IPR006638
InterPro:IPR007197 InterPro:IPR013785 Pfam:PF04055
PIRSF:PIRSF006004 SMART:SM00729 GO:GO:0005737 Gene3D:3.20.20.70
EMBL:CP000031 GenomeReviews:CP000031_GR GO:GO:0046872 GO:GO:0051539
GO:GO:0008033 GO:GO:0001510 eggNOG:COG0820 KO:K06941 OMA:MACDFCA
GO:GO:0070040 TIGRFAMs:TIGR00048 HOGENOM:HOG000217992
RefSeq:YP_168542.1 ProteinModelPortal:Q5LN66 GeneID:3195026
KEGG:sil:SPO3346 PATRIC:23380143 ProtClustDB:CLSK934133
Uniprot:Q5LN66
Length = 393
Score = 382 (139.5 bits), Expect = 2.4e-35, P = 2.4e-35
Identities = 110/339 (32%), Positives = 178/339 (52%)
Query: 31 IWKYVIENPNCEWDEFPSLPSAAYSLLRSKFK-PLTSTLHSVVDSSDDVTTKLLVKLQNG 89
IW+++ + +++ +L A + L F + + +V S+D T K LV++ G
Sbjct: 54 IWQWIYQWGVRDFEAMTNLAKAYRAQLAEHFTIEIPEVITRLV--SEDGTRKYLVRIAGG 111
Query: 90 GFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGE 149
VE V + P R TLCISSQVGC + C+FC TGT NL++ E
Sbjct: 112 HEVEVVYI--------------PEEDRGTLCISSQVGCTLTCSFCHTGTQKLVRNLTAAE 157
Query: 150 IVEQLVHA-SRLSN-------------IRNVVFMGMGEPLNNYAALVEAVRI-MTGLPFQ 194
IV Q++ A L + N+V MGMGEPL N+ + +A++I M Q
Sbjct: 158 IVGQVMMARDDLGEWPVPGAPKDETRLLSNIVLMGMGEPLYNFDNVRDAMKIAMDPEGIQ 217
Query: 195 VSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNAL 254
+S +RIT+ST G+V I + ++ G LA+S HA +VR ++P + + +E+L++AL
Sbjct: 218 LSRRRITLSTSGVVPEIARTAEEI-GCLLAISFHATTDEVRDVLVPINKRWNIEELLSAL 276
Query: 255 KEYQK-NSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSV--SQFR 311
Y K ++ ++I EY+MLDGVND + AH+L + +++ I P + ++
Sbjct: 277 AAYPKVSNSERITFEYVMLDGVNDSDADAHRLLDHIRRYKIPAK-INLIPFNEWPGAPYK 335
Query: 312 TSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 350
SS++++ +F I+ + +RK G DI ACGQL
Sbjct: 336 RSSNNRIRAFANIIYQA-GYAAPIRKTRGDDIMAACGQL 373
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.320 0.136 0.398 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 375 375 0.00088 117 3 11 22 0.38 34
34 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 27
No. of states in DFA: 608 (65 KB)
Total size of DFA: 234 KB (2128 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 30.16u 0.14s 30.30t Elapsed: 00:00:02
Total cpu time: 30.17u 0.14s 30.31t Elapsed: 00:00:02
Start: Fri May 10 21:17:34 2013 End: Fri May 10 21:17:36 2013