BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 017203
(375 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|224060769|ref|XP_002300266.1| predicted protein [Populus trichocarpa]
gi|222847524|gb|EEE85071.1| predicted protein [Populus trichocarpa]
Length = 373
Score = 639 bits (1649), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 311/372 (83%), Positives = 334/372 (89%), Gaps = 7/372 (1%)
Query: 7 SVFDGGIIRAEFEKAGIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTS 66
S+FDG +RAEFEKAGI HFIP IWKYVI+NPNCEWD+ P LPSAAYSLLRSKFK TS
Sbjct: 5 SIFDGPDVRAEFEKAGINTHFIPFIWKYVIKNPNCEWDDIPDLPSAAYSLLRSKFKTSTS 64
Query: 67 TLHSVVDSSDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVG 126
++ SV++S+D VTTKLLVKLQNG FVEAVIMRYD+ LGKY GKPRPGGPRSTLCISSQVG
Sbjct: 65 SVDSVINSNDGVTTKLLVKLQNGAFVEAVIMRYDTRLGKYCGKPRPGGPRSTLCISSQVG 124
Query: 127 CKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSNIRNVVFMGMGEPLNNYAALVEAVR 186
CKMGC FCATG+MGFK+NLSSGEIVEQLVHAS LS IRNVVFMGMGEPLNNY+ALVEAVR
Sbjct: 125 CKMGCKFCATGSMGFKNNLSSGEIVEQLVHASCLSQIRNVVFMGMGEPLNNYSALVEAVR 184
Query: 187 IMTGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFP 246
M+G+PFQ+SPKRITVSTVGI+HAINK H DLPGLNLAVSLHAPVQDVRCQIMPAARAFP
Sbjct: 185 AMSGVPFQLSPKRITVSTVGIIHAINKLHKDLPGLNLAVSLHAPVQDVRCQIMPAARAFP 244
Query: 247 LEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGS 306
LEKLM+AL+ YQKNS QKIFIEYIMLDGVNDEEQHAHQLGKLLETF VVVNLIPFNPIGS
Sbjct: 245 LEKLMDALQVYQKNSMQKIFIEYIMLDGVNDEEQHAHQLGKLLETFDVVVNLIPFNPIGS 304
Query: 307 VSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDKISAKSTPP- 365
+SQFRTSS++KV FQKILRG NIRTTVRKQMGQDISGACGQLVVNLPD + PP
Sbjct: 305 LSQFRTSSEEKVLRFQKILRGVNNIRTTVRKQMGQDISGACGQLVVNLPD----EKKPPN 360
Query: 366 --VTDIEDLCIR 375
VTDIEDL R
Sbjct: 361 LGVTDIEDLVSR 372
>gi|225428987|ref|XP_002265287.1| PREDICTED: ribosomal RNA large subunit methyltransferase N [Vitis
vinifera]
gi|147817733|emb|CAN60150.1| hypothetical protein VITISV_044331 [Vitis vinifera]
gi|296083052|emb|CBI22456.3| unnamed protein product [Vitis vinifera]
Length = 372
Score = 627 bits (1617), Expect = e-177, Method: Compositional matrix adjust.
Identities = 296/366 (80%), Positives = 326/366 (89%)
Query: 7 SVFDGGIIRAEFEKAGIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTS 66
S+FDGG +R +F AGI +FIP IWKYV++NPNC+WD+ SLPSAAY LLRS FKP TS
Sbjct: 5 SIFDGGELRRQFHSAGISPNFIPFIWKYVVQNPNCDWDDITSLPSAAYPLLRSHFKPSTS 64
Query: 67 TLHSVVDSSDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVG 126
+LH+V+DSSD+VTTKLL+KLQNG FVEAVIMRYD+ LGKY GKPRPGGPRSTLCISSQVG
Sbjct: 65 SLHTVIDSSDNVTTKLLIKLQNGSFVEAVIMRYDTRLGKYGGKPRPGGPRSTLCISSQVG 124
Query: 127 CKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSNIRNVVFMGMGEPLNNYAALVEAVR 186
CKMGC FCATG+MGFKSNLSSGEIVEQLVHAS S IRNVVFMGMGEPLNNY+ALVEA+
Sbjct: 125 CKMGCKFCATGSMGFKSNLSSGEIVEQLVHASHFSQIRNVVFMGMGEPLNNYSALVEAIH 184
Query: 187 IMTGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFP 246
IM G PFQ+SPK+ITVSTVGI+HAINK SDLP LNLAVSLHAPVQD+RCQIMPAARAFP
Sbjct: 185 IMQGSPFQLSPKKITVSTVGIIHAINKLQSDLPNLNLAVSLHAPVQDIRCQIMPAARAFP 244
Query: 247 LEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGS 306
LEKLM+ L+ YQ NS QKIFIEYIMLD VNDEEQHAHQLGKLLETFQVVVNLIPFNPIG+
Sbjct: 245 LEKLMDTLRTYQTNSGQKIFIEYIMLDEVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGN 304
Query: 307 VSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDKISAKSTPPV 366
+S F+TSS+ KV+ FQKILRG+YNIRTTVRKQMGQDISGACGQLVVN PDK S S +
Sbjct: 305 LSYFKTSSEQKVARFQKILRGTYNIRTTVRKQMGQDISGACGQLVVNQPDKRSTGSAGLL 364
Query: 367 TDIEDL 372
TDIEDL
Sbjct: 365 TDIEDL 370
>gi|449438321|ref|XP_004136937.1| PREDICTED: dual-specificity RNA methyltransferase RlmN 1-like
[Cucumis sativus]
gi|449495695|ref|XP_004159917.1| PREDICTED: dual-specificity RNA methyltransferase RlmN 1-like
[Cucumis sativus]
Length = 384
Score = 626 bits (1615), Expect = e-177, Method: Compositional matrix adjust.
Identities = 298/379 (78%), Positives = 334/379 (88%), Gaps = 11/379 (2%)
Query: 5 YRSVFDGGIIRAEFEKAGIKQHFIPLIWKYVIENPN----------CEWDEF-PSLPSAA 53
+RS FD G +R EFEKAGIK FIP IWK+++ +PN +W++ PSLPSAA
Sbjct: 4 FRSAFDAGELRTEFEKAGIKTTFIPFIWKHLLHDPNNIFNHNLASEFQWEQVVPSLPSAA 63
Query: 54 YSLLRSKFKPLTSTLHSVVDSSDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPG 113
YSLLR KFKPLTST+HSVVDSSD VTTKLL+KLQ+G FVEAVIMRYD+ LGKY GKPRPG
Sbjct: 64 YSLLRLKFKPLTSTVHSVVDSSDQVTTKLLIKLQSGAFVEAVIMRYDTRLGKYGGKPRPG 123
Query: 114 GPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSNIRNVVFMGMGE 173
G RSTLCISSQVGCKMGC FCATGTMGFKSNL+SGEIVEQLVHASR S IRN+VFMGMGE
Sbjct: 124 GLRSTLCISSQVGCKMGCRFCATGTMGFKSNLTSGEIVEQLVHASRFSQIRNIVFMGMGE 183
Query: 174 PLNNYAALVEAVRIMTGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQD 233
PLNNY++LVEAVR M PF +SPKRIT+STVGI+HAINK HSDLPGLNLAVSLHAPVQD
Sbjct: 184 PLNNYSSLVEAVRAMMAPPFLLSPKRITISTVGIIHAINKLHSDLPGLNLAVSLHAPVQD 243
Query: 234 VRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQ 293
+RCQIMPAARAFPL+KLM+AL+EYQK SQQKI IEYIMLDGVNDEEQHAHQLGKLLETFQ
Sbjct: 244 IRCQIMPAARAFPLQKLMDALQEYQKKSQQKILIEYIMLDGVNDEEQHAHQLGKLLETFQ 303
Query: 294 VVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVN 353
V+VNLIPFNPIGS SQF+TSSD+KVS FQ++LRG+YNIRTT+RKQMGQDISGACGQLVV+
Sbjct: 304 VIVNLIPFNPIGSSSQFKTSSDEKVSVFQQVLRGTYNIRTTIRKQMGQDISGACGQLVVS 363
Query: 354 LPDKISAKSTPPVTDIEDL 372
LP++ S+K + V DIEDL
Sbjct: 364 LPNRSSSKQSSVVPDIEDL 382
>gi|357113533|ref|XP_003558557.1| PREDICTED: ribosomal RNA large subunit methyltransferase N 2-like
[Brachypodium distachyon]
Length = 382
Score = 588 bits (1515), Expect = e-165, Method: Compositional matrix adjust.
Identities = 277/368 (75%), Positives = 318/368 (86%), Gaps = 1/368 (0%)
Query: 8 VFDGGIIRAEFEKAGIKQHFIPLIWKYVIENPNC-EWDEFPSLPSAAYSLLRSKFKPLTS 66
VFD IRAEF+ AGI HFIPLIWKYV++NP C + D PSLP+AAY+LLR+KF+P TS
Sbjct: 15 VFDAAYIRAEFDGAGISPHFIPLIWKYVLQNPRCGDLDGVPSLPAAAYALLRNKFRPTTS 74
Query: 67 TLHSVVDSSDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVG 126
TL + +S D TTKLL++LQNG VEAV+MRYD+ LGKY+GKPRPGG RSTLC+SSQVG
Sbjct: 75 TLTAAAESKDRTTTKLLIRLQNGESVEAVVMRYDTRLGKYDGKPRPGGVRSTLCVSSQVG 134
Query: 127 CKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSNIRNVVFMGMGEPLNNYAALVEAVR 186
CKMGC FCATGTMGFKSNLSSGEIVEQLVHASR S IRNVVFMGMGEPLNNY A+VEA+
Sbjct: 135 CKMGCRFCATGTMGFKSNLSSGEIVEQLVHASRYSQIRNVVFMGMGEPLNNYTAVVEAIH 194
Query: 187 IMTGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFP 246
++TG PFQ+SPKRITVSTVGI+H+INKF++DLP +NLAVSLHAP QD+RCQIMPAARAFP
Sbjct: 195 VLTGPPFQLSPKRITVSTVGIIHSINKFNNDLPNINLAVSLHAPDQDIRCQIMPAARAFP 254
Query: 247 LEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGS 306
L KLMNAL+ YQ S+Q IFIEYIMLDGVND+EQHAHQLGKLLETF+ VVNLIPFNPIGS
Sbjct: 255 LGKLMNALQSYQNESKQTIFIEYIMLDGVNDQEQHAHQLGKLLETFKAVVNLIPFNPIGS 314
Query: 307 VSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDKISAKSTPPV 366
S F+TSSD V FQK+LRG Y+IRTTVR++MGQDI+GACGQLVV+LPD+ SA +
Sbjct: 315 SSNFKTSSDQSVKKFQKVLRGVYSIRTTVRQEMGQDIAGACGQLVVSLPDERSAGGATLL 374
Query: 367 TDIEDLCI 374
+DIEDL I
Sbjct: 375 SDIEDLRI 382
>gi|226498566|ref|NP_001144705.1| uncharacterized protein LOC100277741 [Zea mays]
gi|195646072|gb|ACG42504.1| hypothetical protein [Zea mays]
Length = 381
Score = 585 bits (1508), Expect = e-164, Method: Compositional matrix adjust.
Identities = 277/370 (74%), Positives = 314/370 (84%), Gaps = 1/370 (0%)
Query: 6 RSVFDGGIIRAEFEKAGIKQHFIPLIWKYVIENPNC-EWDEFPSLPSAAYSLLRSKFKPL 64
RSVFD IR+EF AGI HFIPLIWKYV++NP C + D PSLP+AAY+LLR KF+P
Sbjct: 12 RSVFDAAHIRSEFSAAGISAHFIPLIWKYVLQNPRCSDLDGVPSLPAAAYALLRQKFRPT 71
Query: 65 TSTLHSVVDSSDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQ 124
TSTL + DS D TTKLL+ LQNG VEAV+MRYD+ LGKY+GKPRPGG RSTLC+SSQ
Sbjct: 72 TSTLTAAADSKDRTTTKLLICLQNGESVEAVVMRYDTRLGKYDGKPRPGGVRSTLCVSSQ 131
Query: 125 VGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSNIRNVVFMGMGEPLNNYAALVEA 184
VGCKMGC FCATGTMGFKSNLSSGEIVEQLVHASR S IRNVVFMGMGEP+NNY ALVEA
Sbjct: 132 VGCKMGCRFCATGTMGFKSNLSSGEIVEQLVHASRYSQIRNVVFMGMGEPMNNYNALVEA 191
Query: 185 VRIMTGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARA 244
+ + TG PFQ+SPKRITVSTVGI+H INKF+ DLP +NLAVSLHAP QD+RCQIMPAARA
Sbjct: 192 IGVFTGSPFQLSPKRITVSTVGIIHGINKFNGDLPKVNLAVSLHAPDQDIRCQIMPAARA 251
Query: 245 FPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPI 304
FPL KLMNAL+ YQ S+Q IFIEYIMLDGVND+E+HAHQLGKLLETF+ VVNLIPFNPI
Sbjct: 252 FPLGKLMNALQSYQNESKQTIFIEYIMLDGVNDQEEHAHQLGKLLETFKAVVNLIPFNPI 311
Query: 305 GSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDKISAKSTP 364
GS S F+TSSD V +FQK+L+G Y IRTT+R+QMGQDI+GACGQLVV+LPD+ SA
Sbjct: 312 GSSSNFKTSSDQNVKNFQKVLKGIYRIRTTIRQQMGQDIAGACGQLVVSLPDERSAGGAT 371
Query: 365 PVTDIEDLCI 374
++DIEDL I
Sbjct: 372 LLSDIEDLRI 381
>gi|414865368|tpg|DAA43925.1| TPA: hypothetical protein ZEAMMB73_090029 [Zea mays]
Length = 381
Score = 584 bits (1505), Expect = e-164, Method: Compositional matrix adjust.
Identities = 277/370 (74%), Positives = 314/370 (84%), Gaps = 1/370 (0%)
Query: 6 RSVFDGGIIRAEFEKAGIKQHFIPLIWKYVIENPNC-EWDEFPSLPSAAYSLLRSKFKPL 64
RSVFD IR+EF AGI HFIPLIWKYV++NP C + D PSLP+AAY+LLR KF+P
Sbjct: 12 RSVFDAVHIRSEFSAAGISAHFIPLIWKYVLQNPRCSDLDGVPSLPAAAYALLRQKFRPT 71
Query: 65 TSTLHSVVDSSDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQ 124
TSTL + DS D TTKLL+ LQNG VEAV+MRYD+ LGKY+GKPRPGG RSTLC+SSQ
Sbjct: 72 TSTLTAAADSKDRTTTKLLICLQNGESVEAVVMRYDTRLGKYDGKPRPGGVRSTLCVSSQ 131
Query: 125 VGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSNIRNVVFMGMGEPLNNYAALVEA 184
VGCKMGC FCATGTMGFKSNLSSGEIVEQLVHASR S IRNVVFMGMGEP+NNY ALVEA
Sbjct: 132 VGCKMGCRFCATGTMGFKSNLSSGEIVEQLVHASRYSQIRNVVFMGMGEPMNNYNALVEA 191
Query: 185 VRIMTGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARA 244
+ + TG PFQ+SPKRITVSTVGI+H INKF+ DLP +NLAVSLHAP QD+RCQIMPAARA
Sbjct: 192 IGVFTGSPFQLSPKRITVSTVGIIHGINKFNGDLPKVNLAVSLHAPDQDIRCQIMPAARA 251
Query: 245 FPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPI 304
FPL KLMNAL+ YQ S+Q IFIEYIMLDGVND+E+HAHQLGKLLETF+ VVNLIPFNPI
Sbjct: 252 FPLGKLMNALQSYQNESKQTIFIEYIMLDGVNDQEEHAHQLGKLLETFKAVVNLIPFNPI 311
Query: 305 GSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDKISAKSTP 364
GS S F+TSSD V +FQK+L+G Y IRTT+R+QMGQDI+GACGQLVV+LPD+ SA
Sbjct: 312 GSSSNFKTSSDQNVKNFQKVLKGIYRIRTTIRQQMGQDIAGACGQLVVSLPDERSAGGAT 371
Query: 365 PVTDIEDLCI 374
++DIEDL I
Sbjct: 372 LLSDIEDLRI 381
>gi|242036573|ref|XP_002465681.1| hypothetical protein SORBIDRAFT_01g043670 [Sorghum bicolor]
gi|241919535|gb|EER92679.1| hypothetical protein SORBIDRAFT_01g043670 [Sorghum bicolor]
Length = 381
Score = 584 bits (1505), Expect = e-164, Method: Compositional matrix adjust.
Identities = 275/368 (74%), Positives = 314/368 (85%), Gaps = 1/368 (0%)
Query: 8 VFDGGIIRAEFEKAGIKQHFIPLIWKYVIENPNC-EWDEFPSLPSAAYSLLRSKFKPLTS 66
VFD IR+EF AGI HFIPLIWKYV++NP C + D PSLP+AAY+LLR KF+P TS
Sbjct: 14 VFDAAYIRSEFSAAGISGHFIPLIWKYVLQNPRCSDLDGVPSLPAAAYALLRQKFRPTTS 73
Query: 67 TLHSVVDSSDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVG 126
TL + DS D TTKLL+ LQNG VEAV+MRYD+ LGKY+GKPRPGG RSTLC+SSQVG
Sbjct: 74 TLTAAADSKDRTTTKLLISLQNGESVEAVVMRYDTRLGKYDGKPRPGGLRSTLCVSSQVG 133
Query: 127 CKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSNIRNVVFMGMGEPLNNYAALVEAVR 186
CKMGC FCATGTMGFKSNLSSGEI+EQLVHASR S IRNVVFMGMGEP+NNY ALVEA+
Sbjct: 134 CKMGCRFCATGTMGFKSNLSSGEIIEQLVHASRYSQIRNVVFMGMGEPMNNYNALVEAIG 193
Query: 187 IMTGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFP 246
+ TG PFQ+SPKRITVSTVGI+H INKF++DLP +NLAVSLHAP QD+RCQIMPAARAFP
Sbjct: 194 VFTGSPFQLSPKRITVSTVGIIHGINKFNADLPKVNLAVSLHAPDQDIRCQIMPAARAFP 253
Query: 247 LEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGS 306
L KLMNAL+ YQ S+Q IFIEYIMLDGVND+E+HAHQLGKLLETF+ VVNLIPFNPIGS
Sbjct: 254 LVKLMNALQSYQNESKQTIFIEYIMLDGVNDQEEHAHQLGKLLETFKAVVNLIPFNPIGS 313
Query: 307 VSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDKISAKSTPPV 366
+S F+TSSD V FQK+L+G Y+IRTTVR+QMGQDI+GACGQLVV+LPD+ SA +
Sbjct: 314 LSNFKTSSDQNVKKFQKVLKGIYHIRTTVRQQMGQDIAGACGQLVVSLPDERSAGGATLL 373
Query: 367 TDIEDLCI 374
+DIEDL I
Sbjct: 374 SDIEDLRI 381
>gi|115451403|ref|NP_001049302.1| Os03g0202300 [Oryza sativa Japonica Group]
gi|108706720|gb|ABF94515.1| radical SAM enzyme, Cfr family protein, expressed [Oryza sativa
Japonica Group]
gi|113547773|dbj|BAF11216.1| Os03g0202300 [Oryza sativa Japonica Group]
Length = 388
Score = 582 bits (1499), Expect = e-163, Method: Compositional matrix adjust.
Identities = 274/368 (74%), Positives = 314/368 (85%), Gaps = 1/368 (0%)
Query: 8 VFDGGIIRAEFEKAGIKQHFIPLIWKYVIENPNC-EWDEFPSLPSAAYSLLRSKFKPLTS 66
VFD IRAEF AGI HFIPLIWKYV++NP C + D PSLP+AAY+LLR KF+P TS
Sbjct: 21 VFDAAYIRAEFAAAGISPHFIPLIWKYVLQNPRCGDLDAVPSLPAAAYALLRQKFQPTTS 80
Query: 67 TLHSVVDSSDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVG 126
TL + +S D TTKLL++L+NG VEAVIMRYD+ LGKY+GKPRPGG RSTLC+SSQVG
Sbjct: 81 TLTTAAESKDRTTTKLLIRLKNGESVEAVIMRYDTRLGKYDGKPRPGGVRSTLCVSSQVG 140
Query: 127 CKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSNIRNVVFMGMGEPLNNYAALVEAVR 186
CKMGC FCATGTMGFKSNLSSGEIVEQLVHASR S IRNVVFMGMGEPLNNY ALVEA++
Sbjct: 141 CKMGCRFCATGTMGFKSNLSSGEIVEQLVHASRYSQIRNVVFMGMGEPLNNYTALVEAIQ 200
Query: 187 IMTGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFP 246
++ G PFQ+SPKRITVSTVGI+H+INKF++DLP +NLAVSLHAP QD+RC IMPAARAFP
Sbjct: 201 VLIGSPFQLSPKRITVSTVGIIHSINKFNNDLPNINLAVSLHAPDQDIRCHIMPAARAFP 260
Query: 247 LEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGS 306
L KLMNAL+ YQ S+Q IFIEYIMLDGVND+EQHAHQLGKLLE F+ VVNLIPFNPIGS
Sbjct: 261 LVKLMNALQSYQNESKQTIFIEYIMLDGVNDQEQHAHQLGKLLEMFKAVVNLIPFNPIGS 320
Query: 307 VSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDKISAKSTPPV 366
+ F+TSS+ V FQKILRG YNIRTT+R+QMGQDI+GACGQLVV+LPD+ SA +
Sbjct: 321 SNNFKTSSEHNVKKFQKILRGIYNIRTTIRQQMGQDIAGACGQLVVSLPDERSAGGATLL 380
Query: 367 TDIEDLCI 374
+DIED+ I
Sbjct: 381 SDIEDIRI 388
>gi|218192280|gb|EEC74707.1| hypothetical protein OsI_10424 [Oryza sativa Indica Group]
Length = 388
Score = 582 bits (1499), Expect = e-163, Method: Compositional matrix adjust.
Identities = 274/368 (74%), Positives = 314/368 (85%), Gaps = 1/368 (0%)
Query: 8 VFDGGIIRAEFEKAGIKQHFIPLIWKYVIENPNC-EWDEFPSLPSAAYSLLRSKFKPLTS 66
VFD IRAEF AGI HFIPLIWKYV++NP C + D PSLP+AAY+LLR KF+P TS
Sbjct: 21 VFDAAYIRAEFAAAGISPHFIPLIWKYVLQNPRCGDLDAVPSLPAAAYALLRQKFQPTTS 80
Query: 67 TLHSVVDSSDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVG 126
TL + +S D TTKLL++L+NG VEAVIMRYD+ LGKY+GKPRPGG RSTLC+SSQVG
Sbjct: 81 TLTTAAESKDHTTTKLLIRLKNGESVEAVIMRYDTRLGKYDGKPRPGGVRSTLCVSSQVG 140
Query: 127 CKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSNIRNVVFMGMGEPLNNYAALVEAVR 186
CKMGC FCATGTMGFKSNLSSGEIVEQLVHASR S IRNVVFMGMGEPLNNY ALVEA++
Sbjct: 141 CKMGCRFCATGTMGFKSNLSSGEIVEQLVHASRYSQIRNVVFMGMGEPLNNYTALVEAIQ 200
Query: 187 IMTGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFP 246
++ G PFQ+SPKRITVSTVGI+H+INKF++DLP +NLAVSLHAP QD+RC IMPAARAFP
Sbjct: 201 VLIGSPFQLSPKRITVSTVGIIHSINKFNNDLPNINLAVSLHAPDQDIRCHIMPAARAFP 260
Query: 247 LEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGS 306
L KLMNAL+ YQ S+Q IFIEYIMLDGVND+EQHAHQLGKLLE F+ VVNLIPFNPIGS
Sbjct: 261 LVKLMNALQSYQNESKQTIFIEYIMLDGVNDQEQHAHQLGKLLEMFKAVVNLIPFNPIGS 320
Query: 307 VSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDKISAKSTPPV 366
+ F+TSS+ V FQKILRG YNIRTT+R+QMGQDI+GACGQLVV+LPD+ SA +
Sbjct: 321 SNNFKTSSEHNVKKFQKILRGIYNIRTTIRQQMGQDIAGACGQLVVSLPDERSAGGATLL 380
Query: 367 TDIEDLCI 374
+DIED+ I
Sbjct: 381 SDIEDIRI 388
>gi|357480659|ref|XP_003610615.1| Ribosomal RNA large subunit methyltransferase N [Medicago
truncatula]
gi|355511950|gb|AES93573.1| Ribosomal RNA large subunit methyltransferase N [Medicago
truncatula]
Length = 380
Score = 581 bits (1497), Expect = e-163, Method: Compositional matrix adjust.
Identities = 281/378 (74%), Positives = 324/378 (85%), Gaps = 10/378 (2%)
Query: 6 RSVFDGGIIRAEFEKAGIKQHFIPLIWKYVIENPN-----CEWD---EFPSLPSAAYSLL 57
RSVFDG +R EF K GI FIP+IWK++ N N C W+ PSLP +AYS L
Sbjct: 4 RSVFDGVELRTEFSKTGIDPKFIPIIWKHIFRNSNSDSDYCNWEWEKHVPSLPCSAYSFL 63
Query: 58 RSKFK-PLTSTLHSVVDSSDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPR 116
RS FK PL+S+L S+ SSD+VT+KL++KLQNG FVEAVIMRYD+ LGKY G+PRPGG R
Sbjct: 64 RSNFKTPLSSSLDSIFHSSDNVTSKLVIKLQNGEFVEAVIMRYDTRLGKYGGEPRPGGLR 123
Query: 117 STLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSNIRNVVFMGMGEPLN 176
+TLCISSQVGCKMGC FCATG+MGFKSNLSSGEIVEQLVHAS ++IRNVVFMGMGEPLN
Sbjct: 124 ATLCISSQVGCKMGCKFCATGSMGFKSNLSSGEIVEQLVHASAFAHIRNVVFMGMGEPLN 183
Query: 177 NYAALVEAVRIMTGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRC 236
NY+A+VE+VRIM+G PFQ+S KRITVSTVGI+H+INK H+D+PGLNLAVSLHAP QD+RC
Sbjct: 184 NYSAVVESVRIMSGSPFQLSLKRITVSTVGIIHSINKLHNDVPGLNLAVSLHAPAQDIRC 243
Query: 237 QIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVV 296
QIMPAARAFPLEKLM +L+EYQ+ S QKI IEYIMLDGVNDEEQHAH LGKLLETF+VVV
Sbjct: 244 QIMPAARAFPLEKLMASLQEYQRKSLQKILIEYIMLDGVNDEEQHAHLLGKLLETFEVVV 303
Query: 297 NLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPD 356
NLIPFN IG++SQF+++S+ KVS FQKILRG+YNIRTTVRKQMG+DISGACGQLVVNLPD
Sbjct: 304 NLIPFNSIGTLSQFKSTSEQKVSKFQKILRGTYNIRTTVRKQMGEDISGACGQLVVNLPD 363
Query: 357 KISAKSTPPVTDIEDLCI 374
K S + P+TDIEDL I
Sbjct: 364 K-SLGNANPLTDIEDLVI 380
>gi|15230899|ref|NP_188597.1| radical SAM domain-containing protein [Arabidopsis thaliana]
gi|28393068|gb|AAO41968.1| unknown protein [Arabidopsis thaliana]
gi|28827394|gb|AAO50541.1| unknown protein [Arabidopsis thaliana]
gi|332642748|gb|AEE76269.1| radical SAM domain-containing protein [Arabidopsis thaliana]
Length = 372
Score = 578 bits (1491), Expect = e-162, Method: Compositional matrix adjust.
Identities = 280/369 (75%), Positives = 318/369 (86%)
Query: 6 RSVFDGGIIRAEFEKAGIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLT 65
+SVFD I++EFE AGI F IWKYVI+NP+C WDE PSLPSAAYSLL SKFK LT
Sbjct: 4 KSVFDASEIKSEFESAGINPKFAIQIWKYVIQNPDCVWDEIPSLPSAAYSLLHSKFKTLT 63
Query: 66 STLHSVVDSSDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQV 125
S+LHS+ SSD T+KLL+KLQNG FVEAV+MRYD+ LG GKPRPGG RSTLCISSQV
Sbjct: 64 SSLHSLFHSSDGTTSKLLIKLQNGAFVEAVVMRYDTRLGMLGGKPRPGGIRSTLCISSQV 123
Query: 126 GCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSNIRNVVFMGMGEPLNNYAALVEAV 185
GCKMGC FCATGTMGFKSNL+SGEIVEQLVHASR+++IRN+VFMGMGEPLNNY A+VEAV
Sbjct: 124 GCKMGCTFCATGTMGFKSNLTSGEIVEQLVHASRIADIRNIVFMGMGEPLNNYNAVVEAV 183
Query: 186 RIMTGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAF 245
R+M PFQ+SPKRIT+STVGIVHAINK H+DLPG++LAVSLHAPVQ++RCQIMPAARAF
Sbjct: 184 RVMLNQPFQLSPKRITISTVGIVHAINKLHNDLPGVSLAVSLHAPVQEIRCQIMPAARAF 243
Query: 246 PLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIG 305
PL+KLM+AL+ +QKNSQQKIFIEYIMLDGVND+EQHAH LG+LL+TFQVV+NLIPFNPIG
Sbjct: 244 PLQKLMDALQTFQKNSQQKIFIEYIMLDGVNDQEQHAHLLGELLKTFQVVINLIPFNPIG 303
Query: 306 SVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDKISAKSTPP 365
S SQF TSS VS FQKILR +Y IRTT+RK+MGQDISGACGQLVVN PD T
Sbjct: 304 STSQFETSSIQGVSRFQKILRETYKIRTTIRKEMGQDISGACGQLVVNQPDIKKTPGTVE 363
Query: 366 VTDIEDLCI 374
+ DIEDL +
Sbjct: 364 LRDIEDLLL 372
>gi|356539162|ref|XP_003538069.1| PREDICTED: ribosomal RNA large subunit methyltransferase N 1-like
[Glycine max]
Length = 378
Score = 577 bits (1486), Expect = e-162, Method: Compositional matrix adjust.
Identities = 282/376 (75%), Positives = 326/376 (86%), Gaps = 8/376 (2%)
Query: 6 RSVFDGGIIRAEFEKAGIKQHFIPLIWKYV-IENPNCEWD---EFPSLPSAAYSLLRSKF 61
RSVFDGG +R E EK+GI FIP IWK++ I + +WD + PSLPS+AYSLLRS F
Sbjct: 4 RSVFDGGELRREVEKSGIDPKFIPKIWKHILISAKDEDWDWEKQVPSLPSSAYSLLRSNF 63
Query: 62 K-PLTSTLHSVVDSSDDVTTKLLVKLQN--GGFVEAVIMRYDSSLGKYNGKPRPGGPRST 118
K PL+S++HSV S+D++TTKLL++L + G FVEAVIMRYD+ LGKY G+PRPGG R+T
Sbjct: 64 KTPLSSSIHSVFHSADNLTTKLLIQLHHNHGPFVEAVIMRYDTRLGKYAGQPRPGGLRAT 123
Query: 119 LCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSNIRNVVFMGMGEPLNNY 178
LCISSQVGCKMGCNFCATG+MGFK+NLSSGEIVEQLVHAS S IRNVVFMGMGEPLNNY
Sbjct: 124 LCISSQVGCKMGCNFCATGSMGFKNNLSSGEIVEQLVHASTFSQIRNVVFMGMGEPLNNY 183
Query: 179 AALVEAVRIMTGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQI 238
+A+VEAVRIMTGLPFQ+S KRIT+STVGI+HAINK H DLPGLNLAVSLHAP QD+RCQI
Sbjct: 184 SAVVEAVRIMTGLPFQLSSKRITISTVGIIHAINKLHDDLPGLNLAVSLHAPAQDIRCQI 243
Query: 239 MPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNL 298
MPAARAFPL KLM++L+ YQ+ S QKIFIEYIMLDGVNDEE HAH LGKLLETFQVVVNL
Sbjct: 244 MPAARAFPLGKLMDSLQVYQRKSLQKIFIEYIMLDGVNDEEHHAHLLGKLLETFQVVVNL 303
Query: 299 IPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDKI 358
IPFN IG++SQF+ +S+ KVS+FQKILRG+YNIRTTVRKQMGQDISGACGQL+VN+ DK
Sbjct: 304 IPFNSIGTLSQFKPTSEQKVSNFQKILRGTYNIRTTVRKQMGQDISGACGQLLVNISDK- 362
Query: 359 SAKSTPPVTDIEDLCI 374
S + P+TDIED+ I
Sbjct: 363 SLGTAVPLTDIEDIVI 378
>gi|9294428|dbj|BAB02548.1| unnamed protein product [Arabidopsis thaliana]
Length = 382
Score = 569 bits (1466), Expect = e-160, Method: Compositional matrix adjust.
Identities = 280/379 (73%), Positives = 318/379 (83%), Gaps = 10/379 (2%)
Query: 6 RSVFDGGIIRAEFEKAGIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLT 65
+SVFD I++EFE AGI F IWKYVI+NP+C WDE PSLPSAAYSLL SKFK LT
Sbjct: 4 KSVFDASEIKSEFESAGINPKFAIQIWKYVIQNPDCVWDEIPSLPSAAYSLLHSKFKTLT 63
Query: 66 STLHSVVDSSDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQV 125
S+LHS+ SSD T+KLL+KLQNG FVEAV+MRYD+ LG GKPRPGG RSTLCISSQV
Sbjct: 64 SSLHSLFHSSDGTTSKLLIKLQNGAFVEAVVMRYDTRLGMLGGKPRPGGIRSTLCISSQV 123
Query: 126 GCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSNIRNVVFM----------GMGEPL 175
GCKMGC FCATGTMGFKSNL+SGEIVEQLVHASR+++IRN+VFM GMGEPL
Sbjct: 124 GCKMGCTFCATGTMGFKSNLTSGEIVEQLVHASRIADIRNIVFMLLPWFDDCDQGMGEPL 183
Query: 176 NNYAALVEAVRIMTGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVR 235
NNY A+VEAVR+M PFQ+SPKRIT+STVGIVHAINK H+DLPG++LAVSLHAPVQ++R
Sbjct: 184 NNYNAVVEAVRVMLNQPFQLSPKRITISTVGIVHAINKLHNDLPGVSLAVSLHAPVQEIR 243
Query: 236 CQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVV 295
CQIMPAARAFPL+KLM+AL+ +QKNSQQKIFIEYIMLDGVND+EQHAH LG+LL+TFQVV
Sbjct: 244 CQIMPAARAFPLQKLMDALQTFQKNSQQKIFIEYIMLDGVNDQEQHAHLLGELLKTFQVV 303
Query: 296 VNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLP 355
+NLIPFNPIGS SQF TSS VS FQKILR +Y IRTT+RK+MGQDISGACGQLVVN P
Sbjct: 304 INLIPFNPIGSTSQFETSSIQGVSRFQKILRETYKIRTTIRKEMGQDISGACGQLVVNQP 363
Query: 356 DKISAKSTPPVTDIEDLCI 374
D T + DIEDL +
Sbjct: 364 DIKKTPGTVELRDIEDLLL 382
>gi|297834876|ref|XP_002885320.1| hypothetical protein ARALYDRAFT_318717 [Arabidopsis lyrata subsp.
lyrata]
gi|297331160|gb|EFH61579.1| hypothetical protein ARALYDRAFT_318717 [Arabidopsis lyrata subsp.
lyrata]
Length = 382
Score = 567 bits (1460), Expect = e-159, Method: Compositional matrix adjust.
Identities = 280/377 (74%), Positives = 318/377 (84%), Gaps = 10/377 (2%)
Query: 6 RSVFDGGIIRAEFEKAGIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLT 65
+SVFD I++EFE AGI +F IWKYVI+NP+C WDE PSLPSAAYSLL SKFK LT
Sbjct: 4 KSVFDASEIKSEFESAGINPNFAIPIWKYVIQNPDCVWDEIPSLPSAAYSLLHSKFKTLT 63
Query: 66 STLHSVVDSSDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQV 125
S+LHS+ SSD T+KLL+KLQNG FVEAV+MRYD+ LG GKPRPGG RSTLCISSQV
Sbjct: 64 SSLHSLFHSSDGTTSKLLIKLQNGAFVEAVVMRYDTRLGMLGGKPRPGGIRSTLCISSQV 123
Query: 126 GCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSNIRNVVFM----------GMGEPL 175
GCKMGC FCATGTMGFKSNL+SGEIVEQLVHASR+++IRN+VFM GMGEPL
Sbjct: 124 GCKMGCTFCATGTMGFKSNLTSGEIVEQLVHASRIADIRNIVFMLLPWFDDCDQGMGEPL 183
Query: 176 NNYAALVEAVRIMTGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVR 235
NNY A+VEAVR+M PFQ+SPKRIT+STVGIVHAINK +DLPG++LAVSLHAPVQ++R
Sbjct: 184 NNYNAVVEAVRVMLKQPFQLSPKRITISTVGIVHAINKLDNDLPGVSLAVSLHAPVQEIR 243
Query: 236 CQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVV 295
CQIMPAARAFPL+KLM+AL+ +QKNSQQKIFIEYIMLDGVND+EQHAH LG+LL+TFQVV
Sbjct: 244 CQIMPAARAFPLQKLMDALQTFQKNSQQKIFIEYIMLDGVNDQEQHAHLLGELLKTFQVV 303
Query: 296 VNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLP 355
+NLIPFNPIGS SQF TSS VSSFQKILR +Y IRTT+RK+MGQDISGACGQLVVN P
Sbjct: 304 INLIPFNPIGSTSQFETSSIQSVSSFQKILRETYKIRTTIRKEMGQDISGACGQLVVNQP 363
Query: 356 DKISAKSTPPVTDIEDL 372
D T + DIEDL
Sbjct: 364 DIKKTPGTVELRDIEDL 380
>gi|388521505|gb|AFK48814.1| unknown [Lotus japonicus]
Length = 385
Score = 564 bits (1453), Expect = e-158, Method: Compositional matrix adjust.
Identities = 277/383 (72%), Positives = 318/383 (83%), Gaps = 15/383 (3%)
Query: 6 RSVFDGGIIRAEFEKAGIKQHFIPLIWKYVIENP------------NCEWD-EFPSLPSA 52
RS+FDGG +R EFEK GI FIP+IWK++ + EW+ PSLPS+
Sbjct: 4 RSIFDGGEMRTEFEKIGIDSKFIPIIWKHLHLHLNLNLNLNLNLNGEGEWERHVPSLPSS 63
Query: 53 AYSLLRSKF-KPLTSTLHSVVDSSDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPR 111
AY LRS F PL+S+LHSV S+D++TTKLL+KL NG FVEAVIMRYD+ LGKY GKPR
Sbjct: 64 AYQFLRSNFPNPLSSSLHSVFHSADNLTTKLLIKLHNGAFVEAVIMRYDTRLGKYGGKPR 123
Query: 112 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSNIRNVVFMGM 171
PGG R+TLCISSQVGCKMGC FCATG+MGFK+NLSSGEIVEQLVHAS + IRNVVFMGM
Sbjct: 124 PGGLRATLCISSQVGCKMGCKFCATGSMGFKNNLSSGEIVEQLVHASTFAQIRNVVFMGM 183
Query: 172 GEPLNNYAALVEAVRIMTGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPV 231
GEPLNNY+A+V+AVRIMTG PFQ+S KRIT+STVGI+H+I + H+DLPGLNLAVSLHAP
Sbjct: 184 GEPLNNYSAVVQAVRIMTGSPFQLSFKRITISTVGIIHSIKRLHNDLPGLNLAVSLHAPA 243
Query: 232 QDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLET 291
QD+RCQIMPAARAFPLEKLM++L+EYQ S KI IEYIMLDGVNDEEQHA QLGKLL+T
Sbjct: 244 QDIRCQIMPAARAFPLEKLMDSLQEYQTKSLHKILIEYIMLDGVNDEEQHARQLGKLLQT 303
Query: 292 FQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLV 351
FQVVVNLIPFN IG +S+F+ SS+ KVS F+KILRGSYNIRTTVRKQMG+ ISGACGQLV
Sbjct: 304 FQVVVNLIPFNSIGILSEFKPSSEQKVSKFRKILRGSYNIRTTVRKQMGEGISGACGQLV 363
Query: 352 VNLPDKISAKSTPPVTDIEDLCI 374
VNLPDK S + P+TDIEDL I
Sbjct: 364 VNLPDK-SLGNQDPLTDIEDLVI 385
>gi|222624395|gb|EEE58527.1| hypothetical protein OsJ_09817 [Oryza sativa Japonica Group]
Length = 356
Score = 543 bits (1398), Expect = e-152, Method: Compositional matrix adjust.
Identities = 254/335 (75%), Positives = 288/335 (85%), Gaps = 1/335 (0%)
Query: 8 VFDGGIIRAEFEKAGIKQHFIPLIWKYVIENPNC-EWDEFPSLPSAAYSLLRSKFKPLTS 66
VFD IRAEF AGI HFIPLIWKYV++NP C + D PSLP+AAY+LLR KF+P TS
Sbjct: 21 VFDAAYIRAEFAAAGISPHFIPLIWKYVLQNPRCGDLDAVPSLPAAAYALLRQKFQPTTS 80
Query: 67 TLHSVVDSSDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVG 126
TL + +S D TTKLL++L+NG VEAVIMRYD+ LGKY+GKPRPGG RSTLC+SSQVG
Sbjct: 81 TLTTAAESKDRTTTKLLIRLKNGESVEAVIMRYDTRLGKYDGKPRPGGVRSTLCVSSQVG 140
Query: 127 CKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSNIRNVVFMGMGEPLNNYAALVEAVR 186
CKMGC FCATGTMGFKSNLSSGEIVEQLVHASR S IRNVVFMGMGEPLNNY ALVEA++
Sbjct: 141 CKMGCRFCATGTMGFKSNLSSGEIVEQLVHASRYSQIRNVVFMGMGEPLNNYTALVEAIQ 200
Query: 187 IMTGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFP 246
++ G PFQ+SPKRITVSTVGI+H+INKF++DLP +NLAVSLHAP QD+RC IMPAARAFP
Sbjct: 201 VLIGSPFQLSPKRITVSTVGIIHSINKFNNDLPNINLAVSLHAPDQDIRCHIMPAARAFP 260
Query: 247 LEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGS 306
L KLMNAL+ YQ S+Q IFIEYIMLDGVND+EQHAHQLGKLLE F+ VVNLIPFNPIGS
Sbjct: 261 LVKLMNALQSYQNESKQTIFIEYIMLDGVNDQEQHAHQLGKLLEMFKAVVNLIPFNPIGS 320
Query: 307 VSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQ 341
+ F+TSS+ V FQKILRG YNIRTT+R+QMGQ
Sbjct: 321 SNNFKTSSEHNVKKFQKILRGIYNIRTTIRQQMGQ 355
>gi|294461088|gb|ADE76111.1| unknown [Picea sitchensis]
Length = 384
Score = 523 bits (1348), Expect = e-146, Method: Compositional matrix adjust.
Identities = 253/374 (67%), Positives = 301/374 (80%), Gaps = 6/374 (1%)
Query: 7 SVFDGGIIRAEFEKAGIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTS 66
SVFD +R EF+K GI IP+IWKY++ N N E E P L +AAY +LRSKF +TS
Sbjct: 8 SVFDEATLRNEFKKRGINIRCIPVIWKYLLLNENAEVFEVPGLSNAAYDVLRSKFIAMTS 67
Query: 67 TLHSVVDSSDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVG 126
T+ + V S+D TTKLL++LQNG F+E VIM YD+ LG Y G PRPGGPR+TLC+SSQVG
Sbjct: 68 TVKATVKSADQSTTKLLIQLQNGSFIETVIMSYDTRLGTYAGSPRPGGPRATLCVSSQVG 127
Query: 127 CKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSNIRNVVFMGMGEPLNNYAALVEAVR 186
CKMGC FCATG+MGFKSNLS GEIVEQLVHA+R+S IRNVVFMGMGEPLNNY ++VEAVR
Sbjct: 128 CKMGCTFCATGSMGFKSNLSVGEIVEQLVHAARISQIRNVVFMGMGEPLNNYKSVVEAVR 187
Query: 187 IMTGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFP 246
M G FQ++P+ IT+S VG++H IN DLP +NLAVSLHAP+Q++RCQIMPAARAFP
Sbjct: 188 SMIGHCFQLAPRHITISAVGVIHCINNLKYDLPNVNLAVSLHAPLQEIRCQIMPAARAFP 247
Query: 247 LEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGS 306
L KLM+AL YQ++S++KIFIEYIMLDG+ND+EQ AH LGKLLE ++VVVNLI FNPIGS
Sbjct: 248 LGKLMDALHAYQEHSKRKIFIEYIMLDGINDQEQQAHLLGKLLEEYEVVVNLISFNPIGS 307
Query: 307 VSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDKIS-AK---S 362
+S++RTS + V FQKILRG YNIRTTVR++MGQDISGACGQLVVNL DK S AK S
Sbjct: 308 ISKYRTSKKENVELFQKILRGVYNIRTTVRQEMGQDISGACGQLVVNLSDKKSPAKMEYS 367
Query: 363 TPP--VTDIEDLCI 374
P + DIEDL I
Sbjct: 368 GKPEGIPDIEDLSI 381
>gi|255573175|ref|XP_002527517.1| catalytic, putative [Ricinus communis]
gi|223533157|gb|EEF34915.1| catalytic, putative [Ricinus communis]
Length = 337
Score = 506 bits (1304), Expect = e-141, Method: Compositional matrix adjust.
Identities = 233/288 (80%), Positives = 261/288 (90%)
Query: 7 SVFDGGIIRAEFEKAGIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTS 66
S+FD ++ EF++A I HF+PLIWKYVI+NPNCEWD+ P+LPSAAYSLL+SKF TS
Sbjct: 47 SIFDAPDLKREFQEANISLHFVPLIWKYVIKNPNCEWDQIPNLPSAAYSLLKSKFTTFTS 106
Query: 67 TLHSVVDSSDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVG 126
TLHSV++SSD VTTKLL+KLQNG FVEAVIMRYD+ LG Y GKPRPGGPRSTLCISSQVG
Sbjct: 107 TLHSVIESSDGVTTKLLIKLQNGAFVEAVIMRYDTRLGNYGGKPRPGGPRSTLCISSQVG 166
Query: 127 CKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSNIRNVVFMGMGEPLNNYAALVEAVR 186
CKMGC FCATG+MGFK+NLSSGEIVEQLVHA++LS IRNVVFMGMGEPLNNY ALVEA+R
Sbjct: 167 CKMGCKFCATGSMGFKNNLSSGEIVEQLVHATQLSQIRNVVFMGMGEPLNNYTALVEAIR 226
Query: 187 IMTGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFP 246
+M G PFQ+SPK+ITVSTVG++HAINK DLPGLNLAVSLHAPVQD+RC IMPAARAFP
Sbjct: 227 VMLGSPFQLSPKKITVSTVGVIHAINKLQRDLPGLNLAVSLHAPVQDIRCHIMPAARAFP 286
Query: 247 LEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQV 294
LEKLM+AL+ YQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLE F+V
Sbjct: 287 LEKLMDALQVYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLEAFEV 334
>gi|168043878|ref|XP_001774410.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162674262|gb|EDQ60773.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 372
Score = 438 bits (1126), Expect = e-120, Method: Compositional matrix adjust.
Identities = 204/367 (55%), Positives = 276/367 (75%), Gaps = 5/367 (1%)
Query: 7 SVFDGGIIRAEFEKAGIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTS 66
SVFD +++ E E+ G+K + IW +V+ +P+ E + P LP AA +++ KFK LTS
Sbjct: 9 SVFDVEVLKWELERIGVKALHVFTIWTHVLAHPDTEAHDVPGLPFAAIDMIKEKFKTLTS 68
Query: 67 TLHSVVDSSDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVG 126
+ S+D TTKLL++LQ G VEAVIMR+D+ GKY G PR GG R+TLC+SSQVG
Sbjct: 69 QVKDQETSADGTTTKLLIQLQGGQSVEAVIMRHDAGAGKYAGGPRQGGSRATLCVSSQVG 128
Query: 127 CKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSNIRNVVFMGMGEPLNNYAALVEAVR 186
C+MGC FCATGTMG K NLS+GEIVEQLVHAS+++ IRN+VFMGMGEPLNNY ++VE ++
Sbjct: 129 CQMGCTFCATGTMGLKGNLSAGEIVEQLVHASQVTPIRNIVFMGMGEPLNNYKSVVEGIQ 188
Query: 187 IMTGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFP 246
IMTG F +SP ITVSTVG++ I +DLPG+NLA+SLHAP Q++RCQI+P A+A+P
Sbjct: 189 IMTGRCFGLSPSHITVSTVGVIPRILSIANDLPGVNLALSLHAPTQELRCQIVPTAKAYP 248
Query: 247 LEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGS 306
L KLM AL YQ S++++ +EY+ML G+ND ++ AHQLG LL+ V +NLIP+NP S
Sbjct: 249 LHKLMAALNSYQTISRRRVLVEYVMLAGINDSDEVAHQLGTLLKDHNVTLNLIPYNPATS 308
Query: 307 VSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDKISAKSTPPV 366
S ++ +S + ++ FQKILRG + +RTT+R++MGQDI+GACGQLV++ S K +P +
Sbjct: 309 -SDYKPTSQEDLTRFQKILRGVHGVRTTIRQEMGQDIAGACGQLVISQ----SVKQSPKL 363
Query: 367 TDIEDLC 373
TDIED+C
Sbjct: 364 TDIEDMC 370
>gi|302807670|ref|XP_002985529.1| hypothetical protein SELMODRAFT_122498 [Selaginella moellendorffii]
gi|300146735|gb|EFJ13403.1| hypothetical protein SELMODRAFT_122498 [Selaginella moellendorffii]
Length = 374
Score = 426 bits (1095), Expect = e-117, Method: Compositional matrix adjust.
Identities = 206/363 (56%), Positives = 267/363 (73%), Gaps = 5/363 (1%)
Query: 7 SVFDGGIIRAEFEKAGIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTS 66
S+FD GI++AE ++ GIK + IW++V+++PN + P LP A Y LLR++FK LTS
Sbjct: 5 SIFDEGILKAELQRHGIKPLHVYTIWRHVMDHPNAALHQVPGLPGALYPLLRTRFKALTS 64
Query: 67 TLHSVVDSSDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVG 126
TL + S++ TTKLL++LQ+G VE VIMR+ GKY G PRPG R+TLC+SSQVG
Sbjct: 65 TLAAHSTSANGSTTKLLLQLQSGQSVETVIMRHHGGAGKYAGGPRPGSDRATLCVSSQVG 124
Query: 127 CKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSNIRNVVFMGMGEPLNNYAALVEAVR 186
CKMGC+FCATGTMGF +NL++GEIVEQ VHASR+S IRN+VFMGMGEPLNNY ++V+AV+
Sbjct: 125 CKMGCSFCATGTMGFVANLTAGEIVEQYVHASRMSPIRNIVFMGMGEPLNNYNSVVQAVQ 184
Query: 187 IMTGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFP 246
+TG F +SP RIT+STVGIV I DLPG+NLA+SLHAP Q +RCQI+PA+RAF
Sbjct: 185 TLTGRCFGLSPSRITISTVGIVPRILSLAGDLPGVNLALSLHAPTQALRCQIVPASRAFT 244
Query: 247 LEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGS 306
L+KLM A+ YQ +S + +FIEY+ML VND Q A QLG LL +VV+NLIP+N
Sbjct: 245 LDKLMAAVDAYQASSNRTLFIEYVMLQDVNDSSQDARQLGCLLRDRKVVLNLIPYNHTFV 304
Query: 307 VSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDKISAKSTPPV 366
V +R + D+V FQKI+R + IRTTVR++MGQDI GACGQL + K++P +
Sbjct: 305 VGDYRATPADRVHHFQKIVREEFGIRTTVRQEMGQDIDGACGQLALK-----KLKASPDM 359
Query: 367 TDI 369
DI
Sbjct: 360 EDI 362
>gi|302810701|ref|XP_002987041.1| hypothetical protein SELMODRAFT_182858 [Selaginella moellendorffii]
gi|300145206|gb|EFJ11884.1| hypothetical protein SELMODRAFT_182858 [Selaginella moellendorffii]
Length = 374
Score = 425 bits (1093), Expect = e-116, Method: Compositional matrix adjust.
Identities = 205/363 (56%), Positives = 267/363 (73%), Gaps = 5/363 (1%)
Query: 7 SVFDGGIIRAEFEKAGIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTS 66
S+FD GI++AE ++ GIK + IW++V+++PN + P LP A Y LLR++FK LTS
Sbjct: 5 SIFDEGILKAELQRHGIKPLHVYTIWRHVMDHPNAALHQVPGLPGALYPLLRTRFKALTS 64
Query: 67 TLHSVVDSSDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVG 126
TL + S++ TTKLL++LQ+G VE VIMR+ GKY G PRPG R+TLC+SSQVG
Sbjct: 65 TLAAHSTSANGTTTKLLLQLQSGQSVETVIMRHHGGAGKYAGGPRPGSDRATLCVSSQVG 124
Query: 127 CKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSNIRNVVFMGMGEPLNNYAALVEAVR 186
CKMGC+FCATGTMGF +NL++GEIVEQ VHASR+S IRN+VFMGMGEPLNNY ++V+AV+
Sbjct: 125 CKMGCSFCATGTMGFVANLTAGEIVEQYVHASRMSPIRNIVFMGMGEPLNNYNSVVQAVQ 184
Query: 187 IMTGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFP 246
+TG F +SP RIT+STVGIV I DLPG+NLA+SLHAP Q +RCQI+PA+RAF
Sbjct: 185 TLTGRCFGLSPSRITISTVGIVPRILSVAGDLPGVNLALSLHAPTQALRCQIVPASRAFT 244
Query: 247 LEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGS 306
L+KLM A+ YQ +S + +FIEY+ML VND Q A QLG LL +VV+NLIP+N
Sbjct: 245 LDKLMAAVDAYQASSNRTLFIEYVMLQDVNDSSQDARQLGCLLRDRKVVLNLIPYNHTFV 304
Query: 307 VSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDKISAKSTPPV 366
V +R + D+V FQKI+R + IRTTVR++MGQDI GACGQL + +++P +
Sbjct: 305 VGDYRATPADRVHHFQKIVREEFGIRTTVRQEMGQDIDGACGQLALK-----KLEASPDM 359
Query: 367 TDI 369
DI
Sbjct: 360 EDI 362
>gi|255632735|gb|ACU16719.1| unknown [Glycine max]
Length = 245
Score = 414 bits (1065), Expect = e-113, Method: Compositional matrix adjust.
Identities = 197/246 (80%), Positives = 222/246 (90%), Gaps = 1/246 (0%)
Query: 129 MGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSNIRNVVFMGMGEPLNNYAALVEAVRIM 188
MGCNFCATG+MGFK+NLSSGEIVEQLVHAS S IRNVVFMGMGEPLNNY+A+VEAVRIM
Sbjct: 1 MGCNFCATGSMGFKNNLSSGEIVEQLVHASTFSQIRNVVFMGMGEPLNNYSAVVEAVRIM 60
Query: 189 TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLE 248
TGLPFQ+S KRIT+STVGI+HAINK H DLPGLNLAVSLHAP QD+RCQIMPAARAFPL
Sbjct: 61 TGLPFQLSSKRITISTVGIIHAINKLHDDLPGLNLAVSLHAPAQDIRCQIMPAARAFPLG 120
Query: 249 KLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVS 308
KLM++L+ YQ+ S QKIFIEYIMLDGVNDEE HAH LGKLLETFQVVVNLIPFN IG++S
Sbjct: 121 KLMDSLQVYQRKSLQKIFIEYIMLDGVNDEEHHAHLLGKLLETFQVVVNLIPFNSIGTLS 180
Query: 309 QFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDKISAKSTPPVTD 368
QF+ +S+ KVS+FQKILRG+YNIRTTVRKQMG+DISGACGQL+VN+ DK + P+TD
Sbjct: 181 QFKPTSEQKVSNFQKILRGTYNIRTTVRKQMGRDISGACGQLLVNISDK-PLGTAVPLTD 239
Query: 369 IEDLCI 374
IED+ I
Sbjct: 240 IEDIVI 245
>gi|356495821|ref|XP_003516770.1| PREDICTED: LOW QUALITY PROTEIN: ribosomal RNA large subunit
methyltransferase N-like [Glycine max]
Length = 316
Score = 406 bits (1043), Expect = e-111, Method: Compositional matrix adjust.
Identities = 220/367 (59%), Positives = 255/367 (69%), Gaps = 75/367 (20%)
Query: 27 FIPLIWKYVI-----ENPNCEWD---EFPSLPSAAYSLLRSKFKPLTSTLHSVVDSSDDV 78
FIP+I KY++ +N + +WD + PSL S+AYSL
Sbjct: 6 FIPIIXKYLLLSANAKNKDEDWDXEKQVPSLSSSAYSLF--------------------- 44
Query: 79 TTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRS-----------TLCISSQVGC 127
L LQ P P P+S TLCISSQ+GC
Sbjct: 45 ----LYSLQ---------------------APHPAPPQSWTFRRRHSFGATLCISSQLGC 79
Query: 128 KMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSNIRNVVFMGMGEPLNNYAALVEAVRI 187
KMGCNFCATG+MGFK+NLSSGEIVEQLVH IRNVVFMGMGEPLNNY+A+VEAVRI
Sbjct: 80 KMGCNFCATGSMGFKNNLSSGEIVEQLVHX----QIRNVVFMGMGEPLNNYSAVVEAVRI 135
Query: 188 MTGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPL 247
M +S KRIT+STVGI+HAINK H+DL GLNLAVSLHAP QD+RCQIMPAARAFPL
Sbjct: 136 MX-----LSSKRITISTVGIIHAINKLHNDLSGLNLAVSLHAPAQDIRCQIMPAARAFPL 190
Query: 248 EKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSV 307
KLM++L++YQ S QKIFIEYIMLDGVNDEE HAHQLGKL TFQVVVNL+PFN IG++
Sbjct: 191 GKLMDSLQDYQSKSLQKIFIEYIMLDGVNDEEHHAHQLGKLSRTFQVVVNLMPFNSIGTL 250
Query: 308 SQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDKISAKSTPPVT 367
SQF+ +S+ VS+F KIL G+Y+IRTTVRKQMGQDISGACGQLVVN+PDK S + P+T
Sbjct: 251 SQFKPTSEQNVSNFHKILWGTYHIRTTVRKQMGQDISGACGQLVVNIPDK-SLGNAVPLT 309
Query: 368 DIEDLCI 374
DIEDL I
Sbjct: 310 DIEDLVI 316
>gi|159463592|ref|XP_001690026.1| predicted protein [Chlamydomonas reinhardtii]
gi|158284014|gb|EDP09764.1| predicted protein [Chlamydomonas reinhardtii]
Length = 374
Score = 353 bits (905), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 180/350 (51%), Positives = 238/350 (68%), Gaps = 7/350 (2%)
Query: 6 RSVFDGGIIRAEFEKAGIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLT 65
+SV+D + A FE+ IK +W ++I NP+ W + P +P AA +LL F T
Sbjct: 10 QSVWDTNAVLAAFEEENIKPMHALRMWGWLIRNPSATWHDVPDMPKAAVALLDKYFVKFT 69
Query: 66 STLHSVVDSSDDVTTKLLVKLQNGGFVEAVIMRYD----SSLGKYNGKPRPGGPRSTLCI 121
+ + +SSD TTKLLV+LQ+G VEAV+M YD ++ G RSTLC+
Sbjct: 70 TKVVKCQNSSDGSTTKLLVELQDGMQVEAVVMTYDAPSVTAAGAAAAAAARARKRSTLCV 129
Query: 122 SSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSNIRNVVFMGMGEPLNNYAAL 181
SSQVGC+MGC FCATGTMG K +L++GEIVEQLVHA ++ IRNVVFMGMGEPLNNY A+
Sbjct: 130 SSQVGCQMGCTFCATGTMGLKGHLNAGEIVEQLVHARAVARIRNVVFMGMGEPLNNYEAV 189
Query: 182 VEAVRIMTGLP-FQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMP 240
AV +MT F + + +TVSTVG++ I + DLPG++LA+SLHAP Q++R QI+P
Sbjct: 190 RGAVAMMTDSKYFGLRRRHVTVSTVGVIPRIKQLAEDLPGVSLALSLHAPTQELRLQIVP 249
Query: 241 AARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIP 300
+ARA+ L+KLM A++ YQ NS Q++F EY+ML GVND E+ AHQLG+LL+ VV+NLIP
Sbjct: 250 SARAYKLDKLMEAVRSYQANSSQRVFYEYVMLSGVNDGEEQAHQLGQLLKGDDVVINLIP 309
Query: 301 FNPIGSVSQ--FRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACG 348
+NPI F D V +FQ ILR Y + TT+R++MGQDISGA G
Sbjct: 310 WNPIYQPEGPFFEAPRDGSVGTFQSILRHQYGLHTTIRQEMGQDISGAWG 359
>gi|384252800|gb|EIE26275.1| hypothetical protein COCSUDRAFT_26936 [Coccomyxa subellipsoidea
C-169]
Length = 394
Score = 351 bits (900), Expect = 4e-94, Method: Compositional matrix adjust.
Identities = 183/376 (48%), Positives = 251/376 (66%), Gaps = 6/376 (1%)
Query: 6 RSVFDGGIIRAEFEKAGIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLT 65
+SV+D +R F +AGIK+ I +++++I +P W + P LP AA LL ++ T
Sbjct: 10 KSVWDEADLRDAFREAGIKESHIRRLYRHLIVHPEATWHDVPDLPKAACVLLDKEYVRST 69
Query: 66 STLHSVVDSSDDVTTKLLVKLQNGGFVEAVIMRYDSSLG---KYNGKPRPGGPRSTLCIS 122
S + SSD T KLLV+LQ+G VEAV+M YD G +G G RSTLC+S
Sbjct: 70 SVVEKEQKSSDGSTCKLLVRLQDGMQVEAVVMTYDKEGGDGESEDGHAVLGQQRSTLCVS 129
Query: 123 SQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSNIRNVVFMGMGEPLNNYAALV 182
SQVGC+MGC FCATGTMG K +L++GEIVEQL+HA R++ I+N+VFMGMGEPLNNY A+
Sbjct: 130 SQVGCQMGCTFCATGTMGLKGDLTAGEIVEQLLHAQRVTRIKNIVFMGMGEPLNNYEAVR 189
Query: 183 EAVRIMTGLP-FQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPA 241
AV +M F + ++T+STVGIV I + DLPG++LA+SLHAP Q +R I+P+
Sbjct: 190 SAVALMIDPSLFSLRRSKVTISTVGIVPRILQLVEDLPGVSLALSLHAPNQVLRQSIVPS 249
Query: 242 ARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPF 301
ARA+ L+KLM A+ Y++ + QKIF+EY+ML+ VND + AH+LG+LL +++NLIP+
Sbjct: 250 ARAYKLDKLMAAIDTYREKTGQKIFVEYVMLNQVNDAPETAHELGQLLRGKNMILNLIPW 309
Query: 302 NPIGSVS-QFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDK-IS 359
NPI S F +V++FQ+I+R Y + TVR++MGQDISGACGQLVV
Sbjct: 310 NPIYSPDMHFEAPGGTRVAAFQRIVREDYGVFCTVRQEMGQDISGACGQLVVEQGGAGCG 369
Query: 360 AKSTPPVTDIEDLCIR 375
+S DIE+L R
Sbjct: 370 GQSAGKAADIEELGKR 385
>gi|255640205|gb|ACU20393.1| unknown [Glycine max]
Length = 271
Score = 346 bits (887), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 174/242 (71%), Positives = 202/242 (83%), Gaps = 11/242 (4%)
Query: 6 RSVFDGGIIRAEFEKAGIKQHFIPLIWKYV-IENPNCEWD---EFPSLPSAAYSLLRSKF 61
RSVFDGG +R E EK+GI FIP IWK++ I + +WD + PSLPS+AYSLLRS F
Sbjct: 4 RSVFDGGELRREVEKSGIDPKFIPKIWKHILISAKDEDWDWEKQVPSLPSSAYSLLRSNF 63
Query: 62 K-PLTSTLHSVVDSSDDVTTKLLVKLQN--GGFVEAVIMRYDSSLGKYNGKPRPGGPRST 118
K PL+S++HSV S+D++TTKLL++L + G FVEAVIMRYD+ LGKY G+PRPGG R+T
Sbjct: 64 KTPLSSSIHSVFHSADNLTTKLLIQLHHNHGPFVEAVIMRYDTRLGKYAGQPRPGGLRAT 123
Query: 119 LCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSNIRNVVFMGMGEPLNNY 178
LCISSQVGCKMGCNFCATG+MGFK+NLSSGEIVEQLVHAS S IRNVVFMGMGEPLNNY
Sbjct: 124 LCISSQVGCKMGCNFCATGSMGFKNNLSSGEIVEQLVHASTFSQIRNVVFMGMGEPLNNY 183
Query: 179 AALVEAVRIMTGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA----PVQDV 234
+A+VEAVRIMTGLPFQ+S KRIT+STVGI+HAINK H DLPGLNLAVSLHA P+ D
Sbjct: 184 SAVVEAVRIMTGLPFQLSSKRITISTVGIIHAINKLHDDLPGLNLAVSLHARPRHPLPDN 243
Query: 235 RC 236
C
Sbjct: 244 AC 245
>gi|326434869|gb|EGD80439.1| radical SAM domain-containing protein [Salpingoeca sp. ATCC 50818]
Length = 517
Score = 330 bits (845), Expect = 8e-88, Method: Compositional matrix adjust.
Identities = 170/388 (43%), Positives = 244/388 (62%), Gaps = 24/388 (6%)
Query: 8 VFDGGIIRAEFEKAGIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTST 67
+ D G++ E K GI +W+++I + +E P LP A Y L++ KF TS
Sbjct: 14 LLDEGLVLEECTKLGINHKHAYKMWRHIIARGVTDVEEIPELPKALYKLVKEKFVITTSK 73
Query: 68 LHSVVDSSDDVTTKLLVKLQNGGFVEAVIMRY----------DSSLGKYNGKPR-PGGPR 116
L S S+D+ TTKLL++LQ+G VE VIMRY D +G+ R
Sbjct: 74 LESFKTSADESTTKLLIRLQDGALVETVIMRYGRVELRNFPSDRQRRTEDGETVFASKER 133
Query: 117 STLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSNIRNVVFMGMGEPLN 176
+T+C+SSQVGCKMGC FCATGTMG SNL++GEI+EQL HA+ + IRNVVFMGMGEPL+
Sbjct: 134 ATVCVSSQVGCKMGCTFCATGTMGLLSNLTAGEILEQLYHANTVEKIRNVVFMGMGEPLD 193
Query: 177 NYAALVEAVRIMTGLP-FQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVR 235
NY A+V AVR MT + F +SP RI VSTVG+V + K D+P + LA+SLHAP Q++R
Sbjct: 194 NYDAVVMAVRGMTDVQRFSLSPSRIAVSTVGVVPKMLKMAEDIPQVGLALSLHAPTQELR 253
Query: 236 CQIMPAARAFPLEKLMNALKEYQKNSQQ------KIFIEYIMLDGVNDEEQHAHQLGKLL 289
QI+P A+A+ ++++M A+ + ++ Q + IEY+++D VN E+ AHQLG+LL
Sbjct: 254 AQIVPTAKAWHIDRIMAAMDNFIEHRSQVASRKSHVLIEYVLIDNVNSSEEVAHQLGRLL 313
Query: 290 ETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQ 349
E +V++N+IP+NP ++ S + + F +LR Y++RT VR+++GQD++ ACGQ
Sbjct: 314 EGREVILNVIPYNPTDVPHDYKAPSSETLEKFNAVLR-EYDLRTIVRQELGQDVNAACGQ 372
Query: 350 LVV-----NLPDKISAKSTPPVTDIEDL 372
LV+ N + TDIED+
Sbjct: 373 LVISSQRNNGATAGTGGGACQPTDIEDM 400
>gi|328773686|gb|EGF83723.1| hypothetical protein BATDEDRAFT_3639, partial [Batrachochytrium
dendrobatidis JAM81]
Length = 368
Score = 316 bits (810), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 158/358 (44%), Positives = 230/358 (64%), Gaps = 11/358 (3%)
Query: 6 RSVFDGGIIRAEFEKAGIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLT 65
+ + D G+++ F I +W+Y I+ + + P LP A +L S F P+T
Sbjct: 1 KPMLDEGMLKEAFNLHNISPKHAQKLWRYFIQRNAKSFTDVPELPKQALQILESDFTPMT 60
Query: 66 STLHSVVDSSDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPR-PGGPRSTLCISSQ 124
S + S D++D TTKLLV+LQ+G +E+VIMRY+ +G + R+TLC+SSQ
Sbjct: 61 SKVISRTDNADGSTTKLLVELQDGQRIESVIMRYEKMTKDMDGNIKYRSNKRATLCVSSQ 120
Query: 125 VGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSNIRNVVFMGMGEPLNNYAALVEA 184
VGC MGC FCATGTMG +NLS+GEI+EQLVHA+++ +IRNVVFMGMGEPL+NY A++ A
Sbjct: 121 VGCAMGCTFCATGTMGLLANLSAGEILEQLVHANQVEHIRNVVFMGMGEPLDNYPAVLMA 180
Query: 185 VRIMTGLP-FQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAAR 243
V M F +SP RI+VSTVG+V + D+P + LA+SLHAP Q++R QI+P A+
Sbjct: 181 VNGMIDTSRFGLSPSRISVSTVGVVPRMRSLVRDMPDIGLALSLHAPTQELRTQIVPTAK 240
Query: 244 AFPLEKLMNALKEY---------QKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQV 294
A+ +E++M A + N ++ + IEY+++ +ND E AHQLGKLLE V
Sbjct: 241 AWNIERIMEAADVFIAQQNANVKSHNRRKHVLIEYVLIADINDSEVVAHQLGKLLEGRDV 300
Query: 295 VVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVV 352
++N+IP+NP ++ + + F I+R YN+ T +R+++GQDIS ACGQLV+
Sbjct: 301 LLNVIPYNPTSVPYDYKPPLQETMKVFVDIVRRVYNVHTLLRQELGQDISSACGQLVI 358
>gi|307103703|gb|EFN51961.1| hypothetical protein CHLNCDRAFT_27272 [Chlorella variabilis]
Length = 384
Score = 314 bits (805), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 165/353 (46%), Positives = 229/353 (64%), Gaps = 23/353 (6%)
Query: 6 RSVFDGGIIRAEFEKAGIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLT 65
+SV+D +R FE G IP ++ ++I NP W + P P AA + L + F T
Sbjct: 10 QSVWDVDAVRLAFEAIGANPKHIPRLYNHMIRNPGGGWADLPDFPKAARAALDAGFVLHT 69
Query: 66 STLHSVVDSSDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNG--KPRPGGPRSTLCISS 123
+ L +V SSD TTKLLV+LQ+G VEAV+M+YD++ G +G GG R+TLC+SS
Sbjct: 70 TRLLTVQRSSDGETTKLLVQLQDGLQVEAVVMQYDNTGGWVDGWVAAMEGGKRTTLCVSS 129
Query: 124 QVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSNIRNVVFMGMGEPLNNYAALVE 183
+VGC MGC FCATGTMG ++L++GEIVEQLVHAS +S I+N+VFMGMGEPLNNY A+
Sbjct: 130 EVGCAMGCTFCATGTMGLSADLTAGEIVEQLVHASSVSRIQNIVFMGMGEPLNNYEAVRT 189
Query: 184 AVRIMTG-LPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAA 242
AVR+MT F + +++TVSTVG++ + + D+PG++LA+SLHAP Q++R I
Sbjct: 190 AVRLMTDPSSFALRRRKVTVSTVGVIPRMLQMADDMPGVSLALSLHAPTQELRQTI---- 245
Query: 243 RAFPLEKLMNALKEYQKNSQQKIFIEYIMLD-GVNDEEQHAHQLGKLLETFQVVVNLIPF 301
Y + + Q++F+EY+ML +N + HAHQLG+LL+ V+VNLIP+
Sbjct: 246 --------------YLERTGQRVFVEYVMLGPDINCTQAHAHQLGRLLQGRNVLVNLIPW 291
Query: 302 NPIGSVS-QFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVN 353
NPI S S F + ++F ILR Y + T+R + GQDISGACGQLV+
Sbjct: 292 NPILSPSITFAAPEEGATAAFHSILRYQYGVNCTIRAEKGQDISGACGQLVLE 344
>gi|325192828|emb|CCA27229.1| hypothetical protein SELMODRAFT_122498 [Albugo laibachii Nc14]
Length = 424
Score = 306 bits (783), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 162/367 (44%), Positives = 228/367 (62%), Gaps = 18/367 (4%)
Query: 8 VFDGGIIRAEFEKAGIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTST 67
+FD ++ + E+ K IW+ N N + E P+LP LR F T +
Sbjct: 13 IFDQRLLPSFLEQNKFKNIHAQAIWREFSHNINHSFHEIPNLPLRLQQSLRENFTVCTLS 72
Query: 68 LHSVVDSSDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGC 127
L S S D T KLL K Q+G VE+VIM++ R+ LC+SSQVGC
Sbjct: 73 L-SEKQISKDGTIKLLFKTQDGHGVESVIMKHKG--------------RNMLCVSSQVGC 117
Query: 128 KMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSNIRNVVFMGMGEPLNNYAALVEAVRI 187
+MGC FCATGTMG ++L SGEI+EQL A+ + IRNVVFMGMGEPL NY ++ A++
Sbjct: 118 QMGCTFCATGTMGIIADLCSGEILEQLAFANTFARIRNVVFMGMGEPLQNYDEVIAAIKA 177
Query: 188 MTGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPL 247
MT + F ++PK +T+STVG++H I + + D+P + LA+SLHAP Q++R QI+P+++AFPL
Sbjct: 178 MTSV-FGLAPKHVTLSTVGVIHRIQQLNRDVPLVRLALSLHAPTQELRSQIVPSSKAFPL 236
Query: 248 EKLMNALKEYQKNSQQK-IFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGS 306
EKLM A+ ++ + + + + IEY ML G+ND + AH LGKLL+ V +NLIP+N
Sbjct: 237 EKLMQAIDDHLASREHRVVLIEYCMLKGINDSIETAHLLGKLLQDRSVHINLIPYNTTDV 296
Query: 307 VSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDKISAKSTPPV 366
+QF + SD + +FQ ILR YN++ TVR+ G DI GACGQL + + + S +
Sbjct: 297 DAQFSSPSDQDIRNFQSILRQDYNLKATVRENHGMDIEGACGQLALKTTSQHATPSKNDI 356
Query: 367 T-DIEDL 372
DIEDL
Sbjct: 357 ARDIEDL 363
>gi|167526355|ref|XP_001747511.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163773957|gb|EDQ87591.1| predicted protein [Monosiga brevicollis MX1]
Length = 1527
Score = 299 bits (765), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 162/393 (41%), Positives = 241/393 (61%), Gaps = 30/393 (7%)
Query: 8 VFDGGIIRAEFEKAGIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTST 67
V D ++ E + GI + +W+ ++ N + P LP Y ++ KF TS
Sbjct: 581 VLDEEMVLYETRQLGIADDHVWRMWRAILHNGVTNVRDIPELPKKLYQVIEEKFALTTSR 640
Query: 68 LHSVVDSSDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRP--------------- 112
L S+D+ TTKLL++LQ+G +E VIMRY G++ + P
Sbjct: 641 LVKEETSADNTTTKLLIELQDGAQIETVIMRY----GRFELRNFPEDAQKKSSDGEVSFV 696
Query: 113 GGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSNIRNVVFMGMG 172
R+T+C+SSQVGC+MGC FCATGTMG SNL++GEI+EQL HA+++ IRNVVFMGMG
Sbjct: 697 SKERATVCVSSQVGCQMGCTFCATGTMGLMSNLAAGEILEQLYHANQVEKIRNVVFMGMG 756
Query: 173 EPLNNYAALVEAVRIMTGL-PFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPV 231
EPL+NY A+ AV MT + F + +I+VSTVG+V I++ D+P + LA+SLHAP
Sbjct: 757 EPLDNYDAVRFAVSAMTDVRRFSLGASKISVSTVGVVPRIHQMVEDMPDVGLALSLHAPN 816
Query: 232 QDVRCQIMPAARAFPLEKLMNALKEYQKNSQQ-------KIFIEYIMLDGVNDEEQHAHQ 284
Q++R +I+P+ R++ L+++M A+ +Q+ Q+ I IEY+++D VN E+ AHQ
Sbjct: 817 QELREEIVPSGRSWHLDRIMEAIDHFQETRQETSRRRRTHILIEYVLIDEVNSTEEVAHQ 876
Query: 285 LGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDIS 344
LG LL+ V+VN+IP+NP ++ S F +I+R SY +RT +R+++GQD++
Sbjct: 877 LGHLLKDRDVLVNVIPYNPTDVPHDYKPPSRATTDRFNEIVR-SYGLRTIIRQELGQDVN 935
Query: 345 GACGQLVV--NLPDKISAKSTPPVTDIEDLCIR 375
ACGQLVV + +A + P V D+EDL R
Sbjct: 936 AACGQLVVRSQRAKEANAAAAPAVGDLEDLMSR 968
>gi|217074618|gb|ACJ85669.1| unknown [Medicago truncatula]
Length = 221
Score = 290 bits (741), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 141/203 (69%), Positives = 165/203 (81%), Gaps = 9/203 (4%)
Query: 6 RSVFDGGIIRAEFEKAGIKQHFIPLIWKYVIENPN-----CEWD---EFPSLPSAAYSLL 57
RSVFDG +R EF K GI FIP+IWK++ N N C W+ PSLP +AYS L
Sbjct: 4 RSVFDGVELRTEFSKTGIDPKFIPIIWKHIFRNSNSDSDYCNWEWEKHVPSLPCSAYSFL 63
Query: 58 RSKFK-PLTSTLHSVVDSSDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPR 116
RS FK PL+S+L S+ SSD+VT+KL++KLQNG FVEAVIMRYD+ LGKY G+PRPGG R
Sbjct: 64 RSNFKTPLSSSLDSIFHSSDNVTSKLVIKLQNGEFVEAVIMRYDTRLGKYGGEPRPGGLR 123
Query: 117 STLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSNIRNVVFMGMGEPLN 176
+TLCISSQVGCKMGC FCATG+MGFKSNLSSGEIVEQLVHAS ++IRNVVFMGMGEPLN
Sbjct: 124 ATLCISSQVGCKMGCKFCATGSMGFKSNLSSGEIVEQLVHASAFAHIRNVVFMGMGEPLN 183
Query: 177 NYAALVEAVRIMTGLPFQVSPKR 199
NY+A+VE+VRIM+G PFQ+S KR
Sbjct: 184 NYSAVVESVRIMSGSPFQLSLKR 206
>gi|145344512|ref|XP_001416775.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144577001|gb|ABO95068.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 298
Score = 276 bits (706), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 147/311 (47%), Positives = 193/311 (62%), Gaps = 16/311 (5%)
Query: 49 LPSAAYSLLRSKFKPLTSTLHSVVDSSDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNG 108
LP A LR+ F T+ + S D TTK++V+L G VEA +MR+
Sbjct: 1 LPRAVVDALRANFVLYTTKVRHESRSGDGTTTKMIVELAGGDVVEACVMRHAKG------ 54
Query: 109 KPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSNIRNVVF 168
R+TLC+SSQVGCKMGC FCATGT+G NLS+GEI EQL HASR +RNVVF
Sbjct: 55 -------RTTLCVSSQVGCKMGCTFCATGTLGELGNLSAGEICEQLAHASRGDAVRNVVF 107
Query: 169 MGMGEPLNNYAALVEAVRIMTG-LPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSL 227
MGMGEPLNNY +++A+ MT F +SP +ITVSTVG++ + D PG LA+SL
Sbjct: 108 MGMGEPLNNYRNVIDAIEAMTSDKGFGLSPAKITVSTVGVIPRMRTLRRDAPGTRLALSL 167
Query: 228 HAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNS-QQKIFIEYIMLDGVNDEEQHAHQLG 286
HAP Q +R +I+P A A+ LE LM L E+ + + K IEY +L GVND+E A +LG
Sbjct: 168 HAPNQALRQKIVPTATAYKLEDLMATLDEHMASGPKMKTMIEYCVLGGVNDDEACARELG 227
Query: 287 KLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRG-SYNIRTTVRKQMGQDISG 345
LL +V+VNLIP NP + + + + V +IL +++ TTVR +MGQDI+G
Sbjct: 228 ALLRGKEVIVNLIPLNPTDTPAGHVPPTREAVQKMLEILTSPEFDLFTTVRHEMGQDIAG 287
Query: 346 ACGQLVVNLPD 356
ACGQL + PD
Sbjct: 288 ACGQLALKTPD 298
>gi|424513724|emb|CCO66346.1| radical SAM enzyme, Cfr family [Bathycoccus prasinos]
Length = 579
Score = 273 bits (697), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 142/314 (45%), Positives = 205/314 (65%), Gaps = 14/314 (4%)
Query: 49 LPSAAYSLLRSKFKPLTSTLHSVVDSSDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNG 108
+P A + F LT+ + S D TTKL+V+LQ+G VEAVI+R+ G
Sbjct: 159 IPLWARNRAPETFSLLTTRIAVAETSGDASTTKLIVELQDGHRVEAVIIRH------LKG 212
Query: 109 KPRPG--GPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLS-NIRN 165
+ G G +TLCISSQVGCKMGC FCATGTMG NL++GEIVEQ+ HA R+ +RN
Sbjct: 213 RRAEGKKGLGATLCISSQVGCKMGCTFCATGTMGELGNLTTGEIVEQVAHARRIEPRVRN 272
Query: 166 VVFMGMGEPLNNYAALVEAVRIMTG----LPFQVSPKRITVSTVGIVHAINKFHSDLPGL 221
+VFMGMGEPLNNY A+V+A+R M+ + F + +I VSTVG++ I +F D P +
Sbjct: 273 IVFMGMGEPLNNYDAVVDAIRCMSQSENQMGFNIPCPKICVSTVGVIPNIYRFSEDCPTV 332
Query: 222 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEY-QKNSQQKIFIEYIMLDGVNDEEQ 280
++A+SLHAP Q++R +I+P A A+PL++LM L +Y K+ + + +EY +L G+ND ++
Sbjct: 333 SMALSLHAPTQEIRKKIVPMATAYPLDELMRCLDDYLAKSEKNSMLVEYCVLKGINDTKE 392
Query: 281 HAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMG 340
A LG+LL +VV+N IP+NP ++ + + + ILR Y + TTVR++MG
Sbjct: 393 CARLLGELLGGKKVVLNFIPYNPTDVIAGHERPEMEDIQAMNTILREEYGMTTTVRQEMG 452
Query: 341 QDISGACGQLVVNL 354
DI+GACGQL +++
Sbjct: 453 SDIAGACGQLAISV 466
>gi|255080924|ref|XP_002504028.1| predicted protein [Micromonas sp. RCC299]
gi|226519295|gb|ACO65286.1| predicted protein [Micromonas sp. RCC299]
Length = 485
Score = 265 bits (678), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 148/333 (44%), Positives = 201/333 (60%), Gaps = 33/333 (9%)
Query: 40 NCEWDEFPSLPSAAYSLLRSKFKPLTSTLHSVVDSSDDVTTKLLVKLQNGGFVEAVIMRY 99
N P +P A + +F +T+T+ S D TTK++V+LQ+G VE+V+MR+
Sbjct: 57 NLSESRVPGIPKFARDQIPERFALITTTIADCQTSKDGSTTKMVVELQDGHRVESVVMRH 116
Query: 100 DSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASR 159
D R TLC+SSQVGCKMGC FCATGT+G NL+SGEI+EQLVHA+R
Sbjct: 117 DKG-------------RVTLCVSSQVGCKMGCTFCATGTLGELGNLTSGEILEQLVHANR 163
Query: 160 LSN-----------------IRNVVFMGMGEPLNNYAALVEAVRIMTGL-PFQVSPKRIT 201
L N +RN+VFMGMGEPLNNY A+V A+ MT F ++P R+T
Sbjct: 164 LFNDDGTGAGLRRVSGTAHGVRNLVFMGMGEPLNNYDAVVGAIGPMTDPNAFALAPSRVT 223
Query: 202 VSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNS 261
VSTVG+V + + D PG+ LA+SLHAP Q +R +I+P A A+ L +++AL EY
Sbjct: 224 VSTVGVVPKMRRLVRDAPGVCLALSLHAPNQRLREKIVPTATAYKLPDILSALDEYLATG 283
Query: 262 QQ-KIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSS 320
+ + IEY +L GVND + A +LG+L+ V+VNLIP+NP + + V +
Sbjct: 284 PKVRTMIEYCVLGGVNDTTECARELGELMRHRDVIVNLIPYNPTATPMGHSPPKMEDVRA 343
Query: 321 FQKILRG-SYNIRTTVRKQMGQDISGACGQLVV 352
+L G +N TTVR +MGQDISGACGQL +
Sbjct: 344 MCAVLTGPEFNQFTTVRHEMGQDISGACGQLAL 376
>gi|397641695|gb|EJK74803.1| hypothetical protein THAOC_03506 [Thalassiosira oceanica]
Length = 476
Score = 256 bits (654), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 155/359 (43%), Positives = 204/359 (56%), Gaps = 52/359 (14%)
Query: 47 PSLPSAAYSLLR--SKFKPLTSTLHSVVDSSDDVTTKLLVKLQNGGFVEAVIMRYDSSLG 104
P LP A L F+ TS + SS+ TTKL V+LQ+G VE+V+MR+D
Sbjct: 83 PQLPKALLDYLEHTDDFEVCTSNVQLAQTSSNGSTTKLAVELQDGHVVESVLMRHDG--- 139
Query: 105 KYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRL---- 160
R T+C+SSQVGC MGC FCATGTMG K +LSSGEI+EQLVH S++
Sbjct: 140 -----------RVTICVSSQVGCAMGCTFCATGTMGIKGSLSSGEILEQLVHGSKILAQG 188
Query: 161 ---SNIRNVVFMGMGEPLNNYAALVEAVRIMTG-LPFQVSPKRITVSTVGIVHAINKFHS 216
++IRNVVFMGMGEPLNNY ++ A R M + ++ R+TVSTVG+V +
Sbjct: 189 SNDTSIRNVVFMGMGEPLNNYQNVLAACRSMIDRRTWNLAHNRVTVSTVGVVPRMRDLTR 248
Query: 217 DLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKL-------MNALKEYQKNSQ------- 262
DLP +NLA+SLHAP Q++R +I+P+AR PL L M AL Q N Q
Sbjct: 249 DLPQVNLALSLHAPTQEMRERIVPSARGTPLASLVEAVDAHMMALVNTQDNPQGNGPLDQ 308
Query: 263 ----------QKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRT 312
++ IEY+ML G + AHQLGKL E Q+V+NLIP+N +
Sbjct: 309 EKERQFASKKRRAMIEYVMLTGPTSTLEAAHQLGKLCEGRQLVINLIPYNKTDVKDKLSC 368
Query: 313 SSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDKISAKSTPPVTDIED 371
S++ + F+ I+ Y ++R+ MG DISGACGQLVV ++ A V DIED
Sbjct: 369 PSEEHMMKFRSIV-SQYGSFCSIRRTMGSDISGACGQLVV---EQQKATQNMKVADIED 423
>gi|224003013|ref|XP_002291178.1| hypothetical protein THAPSDRAFT_34735 [Thalassiosira pseudonana
CCMP1335]
gi|220972954|gb|EED91285.1| hypothetical protein THAPSDRAFT_34735, partial [Thalassiosira
pseudonana CCMP1335]
Length = 284
Score = 254 bits (649), Expect = 5e-65, Method: Compositional matrix adjust.
Identities = 144/296 (48%), Positives = 191/296 (64%), Gaps = 18/296 (6%)
Query: 61 FKPLTSTLHSVVDSSDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLC 120
F LTS + S S D TTK+ V+LQ+G VE+V+MR+ G R+TLC
Sbjct: 1 FATLTSKVQSYRTSKDGSTTKIAVELQDGHVVESVLMRH-------------AGSRATLC 47
Query: 121 ISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRL---SNIRNVVFMGMGEPLNN 177
+SSQVGC MGC FCATGTMG + NL+SGEI+EQLVHASR+ IRNVVFMGMGEPLNN
Sbjct: 48 VSSQVGCAMGCTFCATGTMGIRGNLTSGEILEQLVHASRILAFDLIRNVVFMGMGEPLNN 107
Query: 178 YAALVEAVRIMTGLP-FQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRC 236
YA ++ A R M + ++ R+TVSTVG+V I DLP +NLA+SLHAP Q +R
Sbjct: 108 YANVLAACRAMIDRRLWNLAHNRVTVSTVGVVSRIRDLTRDLPEVNLALSLHAPNQKMRE 167
Query: 237 QIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVV 296
I+PAA+ P+E L+ AL + +++ IEY+ML+G + AHQLG+L Q+VV
Sbjct: 168 AIVPAAKGTPIESLIEALDAHMMAKKKRAMIEYVMLEGDTSTIEAAHQLGQLCRGRQLVV 227
Query: 297 NLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVV 352
NLIP+N + S++ + F+ I+ SY ++R+ MG DI+GACGQLVV
Sbjct: 228 NLIPYNKTDVRDKLSCPSEEHMQEFRSIV-SSYGSFCSIRRTMGADIAGACGQLVV 282
>gi|219129697|ref|XP_002185019.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217403514|gb|EEC43466.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 387
Score = 250 bits (639), Expect = 7e-64, Method: Compositional matrix adjust.
Identities = 141/318 (44%), Positives = 195/318 (61%), Gaps = 13/318 (4%)
Query: 59 SKFKPLTSTLHSVVDSSDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRST 118
S F +TS + S+D TTKL V+L +G VE+V+MRY S+ N R++
Sbjct: 77 SGFVTVTSRIEFAQTSADRSTTKLAVQLHDGQLVESVLMRYVSTATSNNS-------RAS 129
Query: 119 LCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSNIRNVVFMGMGEPLNNY 178
LC+SSQ GC MGC FCATGTMG NL++GEI+EQ + +L +RNVVFMGMGEPL+NY
Sbjct: 130 LCVSSQCGCAMGCTFCATGTMGLSGNLTAGEILEQ-IPLPKLDLVRNVVFMGMGEPLDNY 188
Query: 179 AALVEAVRIMTGLP-FQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQ 237
+ +VEA R + + ++ R+TVSTVG+V I K ++LP ++LA+SLHAP Q R
Sbjct: 189 SNVVEACRALIDRQRWNLAHGRVTVSTVGLVSQIRKLTAELPEVSLALSLHAPNQQDRQA 248
Query: 238 IMPAARAFPLEKLMNALKEYQKNSQQKI---FIEYIMLDGVNDEEQHAHQLGKLLETFQV 294
I+P A+ +PLE L++AL ++ QK IEY+ML+G + AHQLGKL E +
Sbjct: 249 IVPTAKHYPLEDLIDALDQHMMAYLQKRTNPMIEYVMLEGPTSTLECAHQLGKLCENRHL 308
Query: 295 VVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNL 354
VVNLIP+N R S + + F++I+ SY T+RK MG DI ACGQL+
Sbjct: 309 VVNLIPYNQTNVRDVLRCPSREHMEEFREIV-ASYGSFCTIRKTMGADIDSACGQLITLR 367
Query: 355 PDKISAKSTPPVTDIEDL 372
+K S D++D+
Sbjct: 368 ENKQSQNEHNAKGDVKDI 385
>gi|303271119|ref|XP_003054921.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226462895|gb|EEH60173.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 327
Score = 250 bits (639), Expect = 7e-64, Method: Compositional matrix adjust.
Identities = 144/332 (43%), Positives = 193/332 (58%), Gaps = 38/332 (11%)
Query: 49 LPSAAYSLLRSKFKPLTSTLHSVVDSSDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNG 108
+P A + F +T+T+ S D TTK++V+LQ+G VEAV+MR+ G
Sbjct: 3 VPKFAVEGVNDAFALMTTTVAECHTSKDGSTTKMVVELQDGHRVEAVVMRHAIHEG---- 58
Query: 109 KPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRL-------- 160
G R+TLC+SSQVGCKMGC FCATGT+G NL+ GEI+EQLVHA RL
Sbjct: 59 ----GRERNTLCVSSQVGCKMGCTFCATGTLGELGNLTCGEILEQLVHAQRLFRGDGDGD 114
Query: 161 -------------------SNIRNVVFMGMGEPLNNYAALVEAVRIMTGLP-FQVSPKRI 200
I N+VFMGMGEPLNNY A++ A+ +T F ++P R+
Sbjct: 115 GGDGDGGGASRRVSGRRRGGGITNLVFMGMGEPLNNYDAVIAALGPITDPKLFALAPSRV 174
Query: 201 TVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKN 260
TVSTVG+V + D PG+ LA+SLHAP Q +R I+P ARA+ L LM A+ +Y +
Sbjct: 175 TVSTVGVVPRMKTLTRDAPGVALALSLHAPNQALRESIVPTARAYKLPALMEAMDKYLAS 234
Query: 261 SQQ-KIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVS 319
+ K +EY +L GVND +HA +LG+LL V+VN IP+NP + + V
Sbjct: 235 GPKVKTMVEYCVLRGVNDGVEHARELGELLRGRDVIVNFIPYNPTDVPMGHAPPTKEAVK 294
Query: 320 SFQKILRG-SYNIRTTVRKQMGQDISGACGQL 350
+ +L G + TTVR +MGQDI+GACGQL
Sbjct: 295 AMVDVLTGPEFGQFTTVRHEMGQDIAGACGQL 326
>gi|219113956|ref|XP_002176161.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217402902|gb|EEC42868.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 471
Score = 249 bits (636), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 141/318 (44%), Positives = 195/318 (61%), Gaps = 13/318 (4%)
Query: 59 SKFKPLTSTLHSVVDSSDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRST 118
S F +TS + S+D TTKL V+L +G VE+V+MRY S+ N R++
Sbjct: 77 SGFVTVTSRIEFAQTSADRSTTKLAVQLHDGQLVESVLMRYVSTATSNNS-------RAS 129
Query: 119 LCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSNIRNVVFMGMGEPLNNY 178
LC+SSQ GC MGC FCATGTMG NL++GEI+EQ + +L +RNVVFMGMGEPL+NY
Sbjct: 130 LCVSSQCGCAMGCTFCATGTMGLSGNLTAGEILEQ-IPLPKLDLVRNVVFMGMGEPLDNY 188
Query: 179 AALVEAVRIMTGLP-FQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQ 237
+ +VEA R + + ++ R+TVSTVG+V I K ++LP ++LA+SLHAP Q R
Sbjct: 189 SNVVEACRALIDRQRWNLAHGRVTVSTVGLVSQIRKLTAELPEVSLALSLHAPNQQDRQA 248
Query: 238 IMPAARAFPLEKLMNALKEYQKNSQQKI---FIEYIMLDGVNDEEQHAHQLGKLLETFQV 294
I+P A+ +PLE L++AL ++ QK IEY+ML+G + AHQLGKL E +
Sbjct: 249 IVPTAKHYPLEDLIDALDQHMMAYLQKRTNPMIEYVMLEGPTSTLECAHQLGKLCENRHL 308
Query: 295 VVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNL 354
VVNLIP+N R S + + F++I+ SY T+RK MG DI ACGQL+
Sbjct: 309 VVNLIPYNQTNVRDVLRCPSREHMEEFREIV-VSYGSFCTIRKTMGADIDSACGQLITLR 367
Query: 355 PDKISAKSTPPVTDIEDL 372
+K S D++D+
Sbjct: 368 ENKQSQNEHNAKGDVKDI 385
>gi|237840861|ref|XP_002369728.1| radical SAM domain-containing protein [Toxoplasma gondii ME49]
gi|211967392|gb|EEB02588.1| radical SAM domain-containing protein [Toxoplasma gondii ME49]
Length = 619
Score = 244 bits (624), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 123/252 (48%), Positives = 167/252 (66%), Gaps = 17/252 (6%)
Query: 116 RSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSNIRNVVFMGMGEPL 175
R+T+C+S+QVGC+MGC FCATGTMG K NL+ EI+EQL HASR+ IRN+VFMGMGEPL
Sbjct: 214 RATVCLSAQVGCQMGCTFCATGTMGKKRNLAEWEILEQLYHASRVETIRNIVFMGMGEPL 273
Query: 176 NNYAALVEAVRIMTGL-PFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDV 234
+NY ++V ++R MT F + R+ +STVG+ H I + SDLP LA+SLHAP Q
Sbjct: 274 DNYNSVVSSIRFMTQPNKFAIGGHRVCISTVGLPHKIRQLASDLPACRLALSLHAPDQPT 333
Query: 235 RCQIMP-AARAFPLEKLMNALKEYQKNSQQK-----------IFIEYIMLDGVNDEEQHA 282
R ++MP AA + LE+++ A E+ K QQK + +EYIM+ VND + A
Sbjct: 334 RLKLMPRAAAGWKLERVLEATDEFVK--QQKRLNSTGMKNIGLLVEYIMIQDVNDTLEQA 391
Query: 283 HQLGKLLE--TFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMG 340
H LG++L+ V+VNLIP+NP ++ S+ ++V F ILR Y I+ VR+ +G
Sbjct: 392 HALGRILQPRADAVIVNLIPYNPTDVPYDYKPSTQERVDDFLTILRKEYAIKVLVRQTLG 451
Query: 341 QDISGACGQLVV 352
QDI ACGQLVV
Sbjct: 452 QDIDSACGQLVV 463
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 44/93 (47%), Gaps = 3/93 (3%)
Query: 7 SVFDGGIIRAEFEKAGIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTS 66
SVFD + + + + IW+YV++ ++ E P LP Y+ L F S
Sbjct: 42 SVFDASALLSALDGKTVHAQ---KIWRYVVQKNVQDFREIPDLPRRLYATLAENFCLHAS 98
Query: 67 TLHSVVDSSDDVTTKLLVKLQNGGFVEAVIMRY 99
+ S D TTKLL++ +G +E IMRY
Sbjct: 99 RVLRTKTSRDRSTTKLLLEFPDGSQIETCIMRY 131
>gi|95007443|emb|CAJ20664.1| hypothetical protein, conserved [Toxoplasma gondii RH]
Length = 641
Score = 244 bits (624), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 123/252 (48%), Positives = 167/252 (66%), Gaps = 17/252 (6%)
Query: 116 RSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSNIRNVVFMGMGEPL 175
R+T+C+S+QVGC+MGC FCATGTMG K NL+ EI+EQL HASR+ IRN+VFMGMGEPL
Sbjct: 236 RATVCLSAQVGCQMGCTFCATGTMGKKRNLAEWEILEQLYHASRVETIRNIVFMGMGEPL 295
Query: 176 NNYAALVEAVRIMTGL-PFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDV 234
+NY ++V ++R MT F + R+ +STVG+ H I + SDLP LA+SLHAP Q
Sbjct: 296 DNYNSVVSSIRFMTQPNKFAIGGHRVCISTVGLPHKIRQLASDLPACRLALSLHAPDQPT 355
Query: 235 RCQIMP-AARAFPLEKLMNALKEYQKNSQQK-----------IFIEYIMLDGVNDEEQHA 282
R ++MP AA + LE+++ A E+ K QQK + +EYIM+ VND + A
Sbjct: 356 RLKLMPRAAAGWKLERVLEATDEFVK--QQKRLNSTGMKNIGLLVEYIMIQDVNDTLEQA 413
Query: 283 HQLGKLLE--TFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMG 340
H LG++L+ V+VNLIP+NP ++ S+ ++V F ILR Y I+ VR+ +G
Sbjct: 414 HALGRILQPRADAVIVNLIPYNPTDVPYDYKPSTQERVDDFLTILRKEYAIKVLVRQTLG 473
Query: 341 QDISGACGQLVV 352
QDI ACGQLVV
Sbjct: 474 QDIDSACGQLVV 485
Score = 41.6 bits (96), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 33/66 (50%)
Query: 34 YVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHSVVDSSDDVTTKLLVKLQNGGFVE 93
YV++ ++ E P LP Y+ L F S + S D TTKLL++ +G +E
Sbjct: 97 YVVQKNVQDFREIPDLPRRLYATLAENFCLHASRVLQTKTSRDRSTTKLLLEFPDGSQIE 156
Query: 94 AVIMRY 99
IMRY
Sbjct: 157 TCIMRY 162
>gi|221503269|gb|EEE28967.1| Radical SAM domain-containing protein, putative [Toxoplasma gondii
VEG]
Length = 619
Score = 244 bits (623), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 123/253 (48%), Positives = 167/253 (66%), Gaps = 17/253 (6%)
Query: 116 RSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSNIRNVVFMGMGEPL 175
R+T+C+S+QVGC+MGC FCATGTMG K NL+ EI+EQL HASR+ IRN+VFMGMGEPL
Sbjct: 214 RATVCLSAQVGCQMGCTFCATGTMGKKRNLAEWEILEQLYHASRVETIRNIVFMGMGEPL 273
Query: 176 NNYAALVEAVRIMTGL-PFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDV 234
+NY ++V ++R MT F + R+ +STVG+ H I + SDLP LA+SLHAP Q
Sbjct: 274 DNYNSVVSSIRFMTQPNKFAIGGHRVCISTVGLPHKIRQLASDLPACRLALSLHAPDQPT 333
Query: 235 RCQIMP-AARAFPLEKLMNALKEYQKNSQQK-----------IFIEYIMLDGVNDEEQHA 282
R ++MP AA + LE+++ A E+ K QQK + +EYIM+ VND + A
Sbjct: 334 RLKLMPRAAAGWKLERVLEATDEFVK--QQKRLNSTGMKNIGLLVEYIMIQDVNDTLEQA 391
Query: 283 HQLGKLLE--TFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMG 340
H LG++L+ V+VNLIP+NP ++ S+ ++V F ILR Y I+ VR+ +G
Sbjct: 392 HALGRILQPRADAVIVNLIPYNPTDVPYDYKPSTQERVDDFLTILRKEYAIKVLVRQTLG 451
Query: 341 QDISGACGQLVVN 353
QDI ACGQLVV
Sbjct: 452 QDIDSACGQLVVR 464
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 44/93 (47%), Gaps = 3/93 (3%)
Query: 7 SVFDGGIIRAEFEKAGIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTS 66
SVFD + + + + IW+YV++ ++ E P LP Y+ L F S
Sbjct: 42 SVFDASALLSALDGKTVHAQ---KIWRYVVQKNVQDFREIPDLPRRLYATLAENFCLHAS 98
Query: 67 TLHSVVDSSDDVTTKLLVKLQNGGFVEAVIMRY 99
+ S D TTKLL++ +G +E IMRY
Sbjct: 99 RVLRTKTSRDRSTTKLLLEFPDGSQIETCIMRY 131
>gi|221482944|gb|EEE21275.1| Radical SAM domain-containing protein, putative [Toxoplasma gondii
GT1]
Length = 482
Score = 244 bits (622), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 123/252 (48%), Positives = 167/252 (66%), Gaps = 17/252 (6%)
Query: 116 RSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSNIRNVVFMGMGEPL 175
R+T+C+S+QVGC+MGC FCATGTMG K NL+ EI+EQL HASR+ IRN+VFMGMGEPL
Sbjct: 77 RATVCLSAQVGCQMGCTFCATGTMGKKRNLAEWEILEQLYHASRVETIRNIVFMGMGEPL 136
Query: 176 NNYAALVEAVRIMTGL-PFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDV 234
+NY ++V ++R MT F + R+ +STVG+ H I + SDLP LA+SLHAP Q
Sbjct: 137 DNYNSVVSSIRFMTQPNKFAIGGHRVCISTVGLPHKIRQLASDLPACRLALSLHAPDQPT 196
Query: 235 RCQIMP-AARAFPLEKLMNALKEYQKNSQQK-----------IFIEYIMLDGVNDEEQHA 282
R ++MP AA + LE+++ A E+ K QQK + +EYIM+ VND + A
Sbjct: 197 RLKLMPRAAAGWKLERVLEATDEFVK--QQKRLNSTGMKNIGLLVEYIMIQDVNDTLEQA 254
Query: 283 HQLGKLLE--TFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMG 340
H LG++L+ V+VNLIP+NP ++ S+ ++V F ILR Y I+ VR+ +G
Sbjct: 255 HALGRILQPRADAVIVNLIPYNPTDVPYDYKPSTQERVDDFLTILRKEYAIKVLVRQTLG 314
Query: 341 QDISGACGQLVV 352
QDI ACGQLVV
Sbjct: 315 QDIDSACGQLVV 326
>gi|401396990|ref|XP_003879955.1| radical SAM enzyme, Cfr family, related [Neospora caninum
Liverpool]
gi|325114363|emb|CBZ49920.1| radical SAM enzyme, Cfr family, related [Neospora caninum
Liverpool]
Length = 512
Score = 242 bits (617), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 129/279 (46%), Positives = 176/279 (63%), Gaps = 19/279 (6%)
Query: 103 LGKYNGKPRP--GGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRL 160
LGK + RP R+T+C+S+QVGC+MGC FCATGTMG K NL+ EI+EQL HASR+
Sbjct: 74 LGKTSDVARPFKSNRRATVCLSAQVGCQMGCTFCATGTMGKKRNLAEWEILEQLYHASRV 133
Query: 161 SNIRNVVFMGMGEPLNNYAALVEAVRIMTGL-PFQVSPKRITVSTVGIVHAINKFHSDLP 219
IRN+VFMGMGEPL+NY +V +VR MT F + + +STVG+ H I + SDLP
Sbjct: 134 EKIRNIVFMGMGEPLDNYNNVVASVRFMTQPNKFAIGGHHVCISTVGLPHRIRQLASDLP 193
Query: 220 GLNLAVSLHAPVQDVRCQIMP-AARAFPLEKLMNALKEYQKNSQQK-----------IFI 267
LA+SLHAP Q R ++MP AA + L+++++A E+ K QQK + +
Sbjct: 194 TCRLALSLHAPDQPTRLKLMPRAAAGWKLDRVLDATDEFVK--QQKRVNSTAMKNIGLLV 251
Query: 268 EYIMLDGVNDEEQHAHQLGKLLE--TFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKIL 325
EYIM+ VND AH LG++L+ V+VNLIP+NP ++ S+ ++V F +IL
Sbjct: 252 EYIMIQDVNDTIDQAHALGRILQPRADAVIVNLIPYNPTEVPYDYKPSTPERVDEFLRIL 311
Query: 326 RGSYNIRTTVRKQMGQDISGACGQLVVNLPDKISAKSTP 364
R Y+I+ VR+ +GQDI ACGQLVV S + P
Sbjct: 312 RQDYSIKVLVRQTLGQDIDSACGQLVVRAGKDKSGEKVP 350
>gi|255074899|ref|XP_002501124.1| predicted protein [Micromonas sp. RCC299]
gi|226516387|gb|ACO62382.1| predicted protein, partial [Micromonas sp. RCC299]
Length = 368
Score = 241 bits (614), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 130/355 (36%), Positives = 202/355 (56%), Gaps = 27/355 (7%)
Query: 22 GIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHSVVDSSDDVTTK 81
GIK+ + L ++ + ++ P + + LLR F TS + + D K
Sbjct: 17 GIKKSSLRLCYRELFRRGKSTFENAPDVSARDMKLLRDNFTVCTSEVVETKTTEDGSGAK 76
Query: 82 LLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGP--------------RSTLCISSQVGC 127
++V+L +G VE V++ + S+ +G G R+T+C+SSQVGC
Sbjct: 77 MVVRLHDGKLVETVVIGHSRSVDDGDGDETRGDGEDADVSDGAKNRVFRNTVCVSSQVGC 136
Query: 128 KMGCNFCATGTMGFKSNLSSGEIVEQLVHASRL---SNIRNVVFMGMGEPLNNYAALVEA 184
MGC FC TGT+G +NL++GEI EQ+ HA L + +RNVV MGMGEPL+NY ++ A
Sbjct: 137 AMGCTFCETGTLGLMANLTAGEICEQVWHARNLCGSTGVRNVVMMGMGEPLDNYEEVLIA 196
Query: 185 VRIMTGLP-FQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAA- 242
+R MT F + + +TVSTVG+ +I + D P + LA+SLHAP QD+R ++P+A
Sbjct: 197 LRAMTHQAVFDMRQRSVTVSTVGVPASIRRLADDAPNVGLALSLHAPTQDLRATLLPSAA 256
Query: 243 -RAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPF 301
+ L +L +L+ +++ S + IEYI++DGVND HA +LG+L F VNLIP+
Sbjct: 257 GTSHTLGRLTESLRYHRQKSGRGAMIEYIVIDGVNDSPTHARELGELSGYF---VNLIPY 313
Query: 302 NP--IGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVR--KQMGQDISGACGQLVV 352
NP +G +R+ +DD + IL + ++ VR + G+++ GACGQL +
Sbjct: 314 NPTDVGGTHGYRSPADDALERMASILGDEFGVKAKVRWSTRRGREVDGACGQLAL 368
>gi|338733713|ref|YP_004672186.1| ribosomal RNA large subunit methyltransferase N 2 [Simkania
negevensis Z]
gi|336483096|emb|CCB89695.1| ribosomal RNA large subunit methyltransferase N 2 [Simkania
negevensis Z]
Length = 362
Score = 239 bits (610), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 131/356 (36%), Positives = 213/356 (59%), Gaps = 23/356 (6%)
Query: 12 GIIRAEFEKAGIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHSV 71
G ++ E+ G + I+ ++ + +DE +LP + L + F + TL ++
Sbjct: 19 GELKGWLEENGEPAYRYKQIFDWLYKKTVFAFDEMANLPKSLREKLAASFSLPSLTLMTI 78
Query: 72 VDSSDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGC 131
DS+D+ TTK L KL++G VE+V++ G R T+C+SSQVGC C
Sbjct: 79 EDSADEETTKFLWKLRDGKLVESVLI--------------SSGDRRTVCVSSQVGCPARC 124
Query: 132 NFCATGTMGFKSNLSSGEIVEQLVH-----ASRLSNIRNVVFMGMGEPLNNYAALVEAVR 186
FCA+G G NL++GEI EQ++ + ++ ++VFMGMGEPL+NY +V+A+R
Sbjct: 125 AFCASGKEGLIRNLTAGEIHEQVLQIQAQLKKKGEHVSHIVFMGMGEPLDNYDQVVKALR 184
Query: 187 IMTG-LPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAF 245
++T L +SP+RITVSTVG+V I K + +NLA+SLHAP Q++R +I+P +R +
Sbjct: 185 LLTHPLALNLSPRRITVSTVGVVEGIEKLMDEEISVNLALSLHAPNQNLRKKIVPYSRKY 244
Query: 246 PLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIG 305
LE ++ A+ Y K +++ + EY++L G+ND + A +LG+LL+ VNLIP+NP+
Sbjct: 245 LLEDILKAVDLYSKKTKRDLTYEYVLLKGINDSRKEAQELGELLKGQHCCVNLIPYNPVD 304
Query: 306 SVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVV-NLPDKISA 360
++ + + + +F++IL + IR+T R G+DI+ ACGQL + +P K A
Sbjct: 305 GLN-LKRPEKESIEAFREILDRA-GIRSTWRYTKGKDIAAACGQLALKKMPPKEEA 358
>gi|444910471|ref|ZP_21230655.1| Ribosomal RNA large subunit methyltransferase N [Cystobacter fuscus
DSM 2262]
gi|444719090|gb|ELW59889.1| Ribosomal RNA large subunit methyltransferase N [Cystobacter fuscus
DSM 2262]
Length = 362
Score = 237 bits (605), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 134/338 (39%), Positives = 188/338 (55%), Gaps = 24/338 (7%)
Query: 20 KAGIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHSVVDSSDDVT 79
+ G H+ L+W + +D L + LR + T H V SSD T
Sbjct: 26 RWGYSAHYRDLLWTALYRQQVESFDALTGLKPELVATLRERTLLERPTTHHEVFSSDGYT 85
Query: 80 TKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTM 139
KLL++L++G VE V+MR+ R+T+C+S+Q GC MGC FCATG M
Sbjct: 86 RKLLLRLRDGQTVETVLMRFKG--------------RATVCLSTQAGCAMGCVFCATGQM 131
Query: 140 GFKSNLSSGEIVEQLVHASRL-----SNIRNVVFMGMGEPLNNYAALVEAVRIMT-GLPF 193
GF +LS GEI+ Q++H +RL ++RNVV MGMGEPL+NY + AV I+ L
Sbjct: 132 GFVRHLSPGEIIGQVLHVTRLLRETNESLRNVVLMGMGEPLHNYEGTLAAVDILVDALGL 191
Query: 194 QVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNA 253
+ P+ IT+STVG+V I + + + LAVSLH R ++PAAR + L +LM+A
Sbjct: 192 ALGPRFITLSTVGVVPGIRRLADEDRPVQLAVSLHGATDAERGALVPAARKWSLAELMDA 251
Query: 254 LKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNP-IGSVSQFRT 312
+ Y +++IF E+ ++ G ND + AH LG LL+ VNLIP NP +G Q
Sbjct: 252 CRYYTDKRKRRIFYEWALISGRNDTPEQAHALGALLQGMDAHVNLIPLNPTVGYAEQ--P 309
Query: 313 SSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 350
S D V +FQ IL G Y + +TVR++ G DI CGQL
Sbjct: 310 SGPDSVRAFQDILAG-YGLPSTVRQRRGIDIDAGCGQL 346
>gi|348690006|gb|EGZ29820.1| hypothetical protein PHYSODRAFT_468167 [Phytophthora sojae]
Length = 261
Score = 233 bits (594), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 117/258 (45%), Positives = 168/258 (65%), Gaps = 16/258 (6%)
Query: 9 FDGGIIRAEFEKAGIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTL 68
FD + A + G K+ IW+++ +NP +++ P +P +LL F T+++
Sbjct: 13 FDQHALPAFLQTHGFKELHALTIWRHLAQNPEASFEDIPGIPKTLRALLGEHFAHFTTSV 72
Query: 69 HSVVDSSDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCK 128
+ S D T KLL+KLQ+G +EAVIMR+ R+TLC+SSQVGC+
Sbjct: 73 -TTEQRSADGTVKLLLKLQDGHEIEAVIMRHKG--------------RNTLCVSSQVGCQ 117
Query: 129 MGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSNIRNVVFMGMGEPLNNYAALVEAVRIM 188
MGC FCATGT+G ++L SGEI+EQL HA+R++ IRNVVFMGMGEPLNNY A++ A+R M
Sbjct: 118 MGCTFCATGTLGIIADLCSGEILEQLAHANRVAPIRNVVFMGMGEPLNNYDAVLAAIRAM 177
Query: 189 TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLE 248
T + F ++PK IT+STVG++H I + D P + LA+SLHAP Q++R +I+P + A+PL+
Sbjct: 178 TKV-FGLAPKYITLSTVGVIHRIKQLSHDAPLVRLALSLHAPTQEMRSEIVPTSTAYPLD 236
Query: 249 KLMNALKEYQKNSQQKIF 266
KLM A+ E+ IF
Sbjct: 237 KLMAAIDEHLAMKYVDIF 254
>gi|116751471|ref|YP_848158.1| radical SAM domain-containing protein [Syntrophobacter fumaroxidans
MPOB]
gi|205829911|sp|A0LQM1.1|RLMN_SYNFM RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|116700535|gb|ABK19723.1| Radical SAM domain protein [Syntrophobacter fumaroxidans MPOB]
Length = 342
Score = 232 bits (592), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 130/289 (44%), Positives = 183/289 (63%), Gaps = 28/289 (9%)
Query: 73 DSSDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCN 132
+ +DD T+K L L++G +EAV++ P PRSTLC+SSQVGC +GC
Sbjct: 72 EQADDGTSKYLFGLRDGHSIEAVLI--------------PDLPRSTLCVSSQVGCALGCK 117
Query: 133 FCATGTMGFKSNLSSGEIVEQLVHASR----LSNIRNVVFMGMGEPLNNYAALVEAVRIM 188
FC TG++GFK NLS+ EIV+Q+ R S I N+VFMGMGEPL N +++ A+R++
Sbjct: 118 FCLTGSLGFKRNLSAAEIVDQVCQVQRDLGSRSRITNIVFMGMGEPLANLDSVLRAIRVI 177
Query: 189 T---GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAF 245
G+ F S +RIT+ST G+V + + + P +NLAVSLHA ++R ++MP R +
Sbjct: 178 AEPNGMAF--SHRRITLSTAGLVPQLRRLGRESP-VNLAVSLHAAENELRAELMPVNRTY 234
Query: 246 PLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNP-I 304
PLE LM A +EY +++I EYI+LDG+ND+ + A QL KLL + VNL+PFNP
Sbjct: 235 PLEVLMAACREYPLPPRKRITFEYILLDGINDDPKQAKQLVKLLHGIRAKVNLMPFNPHP 294
Query: 305 GSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVN 353
GSV FR S+ +V +FQ+ L+ + I T VR+ G +I ACGQLV
Sbjct: 295 GSV--FRKPSEQRVLAFQEALQNA-RITTHVRRSRGGEIGAACGQLVAE 340
>gi|209879529|ref|XP_002141205.1| radical SAM domain-containing protein [Cryptosporidium muris RN66]
gi|209556811|gb|EEA06856.1| radical SAM domain-containing protein [Cryptosporidium muris RN66]
Length = 529
Score = 232 bits (591), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 144/433 (33%), Positives = 219/433 (50%), Gaps = 91/433 (21%)
Query: 8 VFDGGIIRAEFEKAGIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTST 67
+FD F + + + +W+Y+I+ E+ + P +P ++ FK LTS
Sbjct: 14 IFDSSSFLKVFRELKVSESHAYRVWRYLIQKNVKEFSDIPDIPKRILEEIQLNFKLLTSN 73
Query: 68 LHSVVDSSDDVTTKLLVKLQNGGFVEAVIMRYD--------SSLGKYNGKPRPGGP---R 116
+ + D TTKL+++LQ+G +E VIMRYD S + P P R
Sbjct: 74 IVQSHTTDDGNTTKLIIRLQDGHEIETVIMRYDRCNDVAKKSENKNLDTLEVPNLPIYRR 133
Query: 117 STLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN--IRNVVFMGMGEP 174
+LC+SSQ+GC++GC FCATGT+G +L +GEI+EQ+ HA + N ++NVVFMGMGEP
Sbjct: 134 VSLCVSSQIGCRIGCTFCATGTLGLGGSLVTGEIIEQVYHAINILNEPVKNVVFMGMGEP 193
Query: 175 LNNYAALVEAVRIMTGLP-FQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQD 233
L NY +V+A++I+ + +SP +I++STVGI I DLPG+ L +SLHAP Q
Sbjct: 194 LENYNEVVDAIKILLDTRLYGLSPSKISISTVGIPSGIVNMADDLPGVGLCLSLHAPDQV 253
Query: 234 VRCQIMPAARAFPLEKLMNA---------LKEYQK------------------------- 259
+R QI+P A+ + + +L+ + L ++ K
Sbjct: 254 LREQIVPIAKMYKISELIRSTDIFIAKSILNKFIKKITDQRNNRTEIKIDNLESTIISPK 313
Query: 260 --NSQQKIFIEYIMLDGVNDEEQHAHQLGKLL---------------------------- 289
NS + IEYI++ VND HA L LL
Sbjct: 314 WFNSHSTVMIEYILIKDVNDSINHAKALANLLNNTYTDKNDINMIFERCIQSERLEKKVA 373
Query: 290 ETFQ------------VVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRK 337
++FQ + VN++P++ + ++ T S+ KV +F +IL +Y I TVR+
Sbjct: 374 KSFQKAFLDNYKRSNFIFVNILPYSETNATPKYATPSEGKVRTFCRIL-NNYGIVVTVRR 432
Query: 338 QMGQDISGACGQL 350
+MGQDI GACGQL
Sbjct: 433 KMGQDIGGACGQL 445
>gi|308802175|ref|XP_003078401.1| unnamed protein product [Ostreococcus tauri]
gi|116056853|emb|CAL53142.1| unnamed protein product [Ostreococcus tauri]
Length = 368
Score = 230 bits (586), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 131/315 (41%), Positives = 185/315 (58%), Gaps = 31/315 (9%)
Query: 48 SLPSAAYSLLR---SKFKPLTSTLHSVVDSSDDVTTKLLVKLQNGGFVEAVIMRYDSSLG 104
+LP LR S F+ T+ + SSD TTKL+V+LQ+G +EA +MR+
Sbjct: 5 TLPRIVVERLRDGTSGFELYTTRVAHESASSDGSTTKLIVELQDGHKIEACVMRHAKG-- 62
Query: 105 KYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSNIR 164
R+TLC+SSQVGCKMGC FCATGT+G NL+S EI+EQL HA+R++
Sbjct: 63 -----------RTTLCVSSQVGCKMGCTFCATGTLGELGNLASFEILEQLAHANRVA--- 108
Query: 165 NVVFMGMGEPLNNYAALVEAVRIMT-GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNL 223
PLNNY +++EA+ +MT F +S +ITVSTVG++ + D PG L
Sbjct: 109 --------APLNNYDSVIEAIGVMTDDKAFALSASKITVSTVGVIPRMRTLTRDAPGTCL 160
Query: 224 AVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEY-QKNSQQKIFIEYIMLDGVNDEEQHA 282
A+SLHAP Q++R +I+P A A+ L+ LM L+EY + K IEY +L GVND+E A
Sbjct: 161 ALSLHAPTQELRQKIVPTATAYKLDDLMRVLEEYLASGPKMKTMIEYCVLGGVNDDETCA 220
Query: 283 HQLGKLL--ETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMG 340
+LG+L + ++++NLIP NP + + + + V +IL Y + T R MG
Sbjct: 221 EKLGELFRGKEEKIILNLIPLNPTDTPAGHVPPTPEAVRKMMEILMKKYGLFVTRRHTMG 280
Query: 341 QDISGACGQLVVNLP 355
DI+GACGQL + P
Sbjct: 281 DDIAGACGQLALKTP 295
>gi|108760323|ref|YP_629532.1| radical SAM protein [Myxococcus xanthus DK 1622]
gi|123374780|sp|Q1DCU1.1|RLMN1_MYXXD RecName: Full=Dual-specificity RNA methyltransferase RlmN 1;
AltName: Full=23S rRNA
(adenine(2503)-C(2))-methyltransferase 1; AltName:
Full=23S rRNA m2A2503 methyltransferase 1; AltName:
Full=Ribosomal RNA large subunit methyltransferase N 1;
AltName: Full=tRNA (adenine(37)-C(2))-methyltransferase
1; AltName: Full=tRNA m2A37 methyltransferase 1
gi|108464203|gb|ABF89388.1| radical SAM enzyme, Cfr family [Myxococcus xanthus DK 1622]
Length = 359
Score = 229 bits (583), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 125/340 (36%), Positives = 188/340 (55%), Gaps = 23/340 (6%)
Query: 31 IWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHSVVDSSDDVTTKLLVKLQNGG 90
+W + +DE L +LR + H SSD T KLL++L +G
Sbjct: 34 LWTALYRRHATTFDELDGLKPELLRMLREHTRLGQLATHHESFSSDGFTHKLLLRLDDGQ 93
Query: 91 FVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEI 150
+E V+MR+ R+T+CIS+Q GC MGC FCATG MG +L+ GEI
Sbjct: 94 TIETVLMRFKG--------------RATVCISTQAGCAMGCVFCATGQMGLSRHLTPGEI 139
Query: 151 VEQLVHASRL-----SNIRNVVFMGMGEPLNNYAALVEAVRIMT-GLPFQVSPKRITVST 204
V Q++H +R+ +RNVV MGMGEPL+NY + AV ++ L + P+ IT+ST
Sbjct: 140 VGQILHVNRILRASGETLRNVVLMGMGEPLHNYEHTMSAVDVLVDALGLAMGPRFITLST 199
Query: 205 VGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQK 264
VG+V I + + ++LAVSLH R ++PA R +PL++LM+A + Y + +++
Sbjct: 200 VGVVPGIRRLADEERPIHLAVSLHGATDAERAALVPAGRRWPLDELMDACRYYSEKRKRR 259
Query: 265 IFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKI 324
IF E+ ++ G ND +HAH LG+LL VN+IP NP S + V +FQ +
Sbjct: 260 IFFEWTLISGRNDTAEHAHTLGQLLRGMDAHVNVIPLNPTVGYDGG-PSRPESVRAFQDV 318
Query: 325 LRGSYNIRTTVRKQMGQDISGACGQLVVNLPDKISAKSTP 364
L +Y++ +TVR++ G DI CGQL + ++ S +S P
Sbjct: 319 L-ATYDVPSTVRQRRGIDIDAGCGQLKATV-ERRSRRSLP 356
>gi|406931239|gb|EKD66544.1| hypothetical protein ACD_49C00036G0007 [uncultured bacterium (gcode
4)]
Length = 345
Score = 229 bits (583), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 125/316 (39%), Positives = 183/316 (57%), Gaps = 22/316 (6%)
Query: 45 EFPSLPSAAYSLLRSKFKPLTSTLHSVVDSSDDVTTKLLVKLQNGGFVEAVIMRYDSSLG 104
+ ++ + + LLR + + S S + TTK+L K +G F+E+VIMR+ S
Sbjct: 41 DISTISNKSKELLRENCFFTSLNVESQTTSDNGQTTKILFKTTDGLFIESVIMRHLSG-- 98
Query: 105 KYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHA-----SR 159
R+TLC+SSQ C MGC+FCATG +G + NL EIV+Q++ A +
Sbjct: 99 -----------RNTLCVSSQAWCPMGCSFCATGKLGLQRNLEFYEIVDQIMEAVLILHAE 147
Query: 160 LSNIRNVVFMGMGEPLNNYAALVEAVRIMTGL-PFQVSPKRITVSTVGIVHAINKFHSDL 218
N+RN+V+MGMGEP NY + ++ + F S +R+T+ST GI+ I +F D
Sbjct: 148 WKNLRNIVYMGMGEPFLNYPNVKLSLEVACKQQKFDFSSRRVTISTCGIISGIKQFWHDF 207
Query: 219 PGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDE 278
P +LA+SLHAP ++R +IMP +PL LM AL +Y + ++IF EYIM+ G+ND
Sbjct: 208 PQTSLAISLHAPNDELRSKIMPVNITYPLNFLMKALDDYTSLTNKRIFYEYIMIWGINDS 267
Query: 279 EQHAHQLGKLLETFQVVVNLIPFNPIGSV--SQFRTSSDDKVSSFQKILRGSYNIRTTVR 336
++A QL KLLE VN IP+NP V S + +S ++ FQ+IL S+ I +T+R
Sbjct: 268 LENAKQLAKLLEWKLAHVNFIPYNPGEWVNSSWYSATSKKRIQEFQQILEKSW-IPSTIR 326
Query: 337 KQMGQDISGACGQLVV 352
M DI ACGQL +
Sbjct: 327 HTMWDDIDAACGQLAL 342
>gi|161528893|ref|YP_001582719.1| radical SAM protein [Nitrosopumilus maritimus SCM1]
gi|205829829|sp|A9A3L9.1|RLMN_NITMS RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA
(adenine(2503)-C(2))-methyltransferase; AltName:
Full=23S rRNA m2A2503 methyltransferase
gi|160340194|gb|ABX13281.1| radical SAM enzyme, Cfr family [Nitrosopumilus maritimus SCM1]
Length = 351
Score = 228 bits (580), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 132/355 (37%), Positives = 209/355 (58%), Gaps = 34/355 (9%)
Query: 13 IIRAEFEKAGIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTL---- 68
+I +++ Q +PL +K+ P + ++ P LP LR +F T+
Sbjct: 16 VIDMGYDRYRADQILLPLYYKF----PK-DINDIPQLPKK----LREEFTEAGYTIGSAK 66
Query: 69 --HSVVDSSDDVTTKLLVKLQNGGFVEAVIMRYD-SSLGKYNGKPRPGGPRSTLCISSQV 125
H VV S D TTKLL++L +G VE V+M+Y+ + +G G PRST+C+S+Q+
Sbjct: 67 EIHRVV-SDDGDTTKLLLELSDGSSVETVLMQYEPTKIG--------GHPRSTICVSTQI 117
Query: 126 GCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRL-----SNIRNVVFMGMGEPLNNYAA 180
GC MGC FCATG MGF++NL + IV Q++H + L ++ N+VFMGMGEP+ NY
Sbjct: 118 GCAMGCVFCATGQMGFETNLKAEHIVSQVIHFAELLEQRGEHVTNLVFMGMGEPMANYDE 177
Query: 181 LVEAVRIMT-GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIM 239
++ AV+I+T F + + IT+ST+GI I K + + LA+SLHAP ++R +++
Sbjct: 178 MIRAVKILTHDRGFGLGQRHITISTIGITSGIEKLAEENLQIGLAISLHAPNNELRKKLV 237
Query: 240 PAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLI 299
P A +E ++ + ++Y K + +++ EY +++GVND + AH+L +LL VN+I
Sbjct: 238 PTAGPNSVEDIIKSGRDYFKKTGRRVTFEYALMEGVNDSPEIAHELARLLRGNGSHVNII 297
Query: 300 PFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNL 354
P NP + F+ S+ V F++ILR S + TVR + G +IS ACGQL ++
Sbjct: 298 PINP--TAGDFKRPSEKNVLEFEQILRKS-GVNCTVRVEKGTEISAACGQLRTDI 349
>gi|388496134|gb|AFK36133.1| unknown [Medicago truncatula]
Length = 135
Score = 225 bits (573), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 108/136 (79%), Positives = 122/136 (89%), Gaps = 1/136 (0%)
Query: 239 MPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNL 298
MPAARAFPLEKLM +L+EYQ+ S QKI IEYIMLDGVNDEEQHAH LGKLLETF+VVVNL
Sbjct: 1 MPAARAFPLEKLMASLQEYQRKSLQKILIEYIMLDGVNDEEQHAHLLGKLLETFEVVVNL 60
Query: 299 IPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDKI 358
IPFN IG++SQF+++S+ KVS FQKILRG+YNIRTTVRKQMG+DISGACGQLVVNLPDK
Sbjct: 61 IPFNSIGTLSQFKSTSEQKVSKFQKILRGTYNIRTTVRKQMGEDISGACGQLVVNLPDK- 119
Query: 359 SAKSTPPVTDIEDLCI 374
S + P+TDIEDL I
Sbjct: 120 SLGNANPLTDIEDLVI 135
>gi|205829720|sp|Q6MDD0.2|RLMN2_PARUW RecName: Full=Probable dual-specificity RNA methyltransferase RlmN
2; AltName: Full=23S rRNA
(adenine(2503)-C(2))-methyltransferase 2; AltName:
Full=23S rRNA m2A2503 methyltransferase 2; AltName:
Full=Ribosomal RNA large subunit methyltransferase N 2;
AltName: Full=tRNA (adenine(37)-C(2))-methyltransferase
2; AltName: Full=tRNA m2A37 methyltransferase 2
Length = 358
Score = 224 bits (572), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 124/351 (35%), Positives = 192/351 (54%), Gaps = 22/351 (6%)
Query: 9 FDGGIIRAEFEKAGIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTL 68
FD + + G K+ I ++ + WD+ +L + L + L
Sbjct: 6 FDHQKLVEWLKAHGEKEFHAKQILSWIYQKGVLSWDKMSNLSQSLREKLAKHIRLPVLEL 65
Query: 69 HSVVDSSDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCK 128
+S D T K L +L++G VE+V++ G R T+C+SSQVGC
Sbjct: 66 VRYTESIDQETIKFLWRLRDGNLVESVLIL--------------SGIRRTVCVSSQVGCP 111
Query: 129 MGCNFCATGTMGFKSNLSSGEIVEQLVH-----ASRLSNIRNVVFMGMGEPLNNYAALVE 183
C FCA+G GF NL EI+EQ++ +S+ + +VV+MGMGEPL NY ++V
Sbjct: 112 AKCAFCASGQQGFFRNLRPTEIIEQILQINAWLSSKGEKVSHVVYMGMGEPLKNYESVVA 171
Query: 184 AVRIMTGLPF-QVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAA 242
++R+++ F +S +RITVSTVG+V I + + +NL +SLHAP Q +R +I+P A
Sbjct: 172 SIRVLSHPDFCNISQRRITVSTVGVVEGIKRLSKEGLKVNLVLSLHAPNQHIRKKIIPYA 231
Query: 243 RAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFN 302
R +PLE+++ ++ EY + +++ I EY +L G+ND HAH+L LL+ Q VNLIP+N
Sbjct: 232 RKYPLEEILESMDEYAQKTKRDITFEYTLLAGINDHPDHAHELAHLLKGKQCTVNLIPYN 291
Query: 303 PIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVN 353
PI + + + + F+ +L GS+ I T R G DI ACGQL +
Sbjct: 292 PIPGL-RLKRPEKKAIKQFRSVLYGSH-IVNTCRYTKGDDIGAACGQLALQ 340
>gi|338530141|ref|YP_004663475.1| radical SAM protein [Myxococcus fulvus HW-1]
gi|337256237|gb|AEI62397.1| radical SAM protein [Myxococcus fulvus HW-1]
Length = 359
Score = 223 bits (569), Expect = 8e-56, Method: Compositional matrix adjust.
Identities = 120/326 (36%), Positives = 179/326 (54%), Gaps = 22/326 (6%)
Query: 31 IWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHSVVDSSDDVTTKLLVKLQNGG 90
+W + +DE L LR + H S D T KLL++L +G
Sbjct: 34 LWTALYRRHAASFDELDGLKPELLRALREHTRLGQLATHHESFSGDGFTHKLLLRLDDGQ 93
Query: 91 FVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEI 150
+E V+MR+ R+T+CIS+Q GC MGC FCATG MG +L+ GEI
Sbjct: 94 TIETVLMRFKG--------------RATVCISTQAGCAMGCVFCATGQMGLSRHLTPGEI 139
Query: 151 VEQLVHASRL-----SNIRNVVFMGMGEPLNNYAALVEAVRIMT-GLPFQVSPKRITVST 204
V Q++H +R+ +RNVV MGMGEPL+NY + AV ++ + + P+ IT+ST
Sbjct: 140 VGQVLHVNRILRASGEALRNVVLMGMGEPLHNYEHTMSAVDVLVDAMGLAMGPRFITLST 199
Query: 205 VGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQK 264
VG+V I + + ++LAVSLH R ++PA R +PL++LM+A + Y + +++
Sbjct: 200 VGVVPGIRRLADEERPIHLAVSLHGATDAERAALVPAGRRWPLDELMDACRYYSEKRKRR 259
Query: 265 IFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKI 324
IF E+ ++ G ND +HAH LG+LL+ VN+IP NP S + V +FQ +
Sbjct: 260 IFFEWTLISGRNDTAEHAHTLGQLLQGMDAHVNVIPLNPTVGYDGG-PSRPESVRAFQDV 318
Query: 325 LRGSYNIRTTVRKQMGQDISGACGQL 350
L +Y + +TVR++ G DI CGQL
Sbjct: 319 L-AAYEVPSTVRQRRGIDIDAGCGQL 343
>gi|298245810|ref|ZP_06969616.1| radical SAM enzyme, Cfr family [Ktedonobacter racemifer DSM 44963]
gi|297553291|gb|EFH87156.1| radical SAM enzyme, Cfr family [Ktedonobacter racemifer DSM 44963]
Length = 388
Score = 223 bits (568), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 124/315 (39%), Positives = 185/315 (58%), Gaps = 35/315 (11%)
Query: 68 LHSVVDSSDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGC 127
+ S V S DD T K+L++L +G +E+V+M Y LG+ + R+T+C+SSQ GC
Sbjct: 83 VRSEVSSKDDRTRKILLELADGKLIESVLMLY-PPLGESSA-------RATICVSSQAGC 134
Query: 128 KMGCNFCATGTMGFKSNLSSGEIVEQLVHASR-----------------LSNIRNVVFMG 170
GC FCATG MGF +L SGEI+ Q++H +R + +I N+V MG
Sbjct: 135 AFGCTFCATGQMGFDRHLQSGEIIAQVLHFARELRATPWSAAGLPGSTPIDHITNIVLMG 194
Query: 171 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 229
MGEPL+NY +++A+RI+ + F + + +TVSTVG+V AI K + +NLA+SLHA
Sbjct: 195 MGEPLHNYDNVLQALRILNSAAGFNLGARHMTVSTVGLVPAIRKLSQEQLQVNLAISLHA 254
Query: 230 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLL 289
P + R Q MP R +PLE+L+ A ++Y +++++ EY++L GVND + A QL +LL
Sbjct: 255 PTNEARSQTMPVNRKYPLEELLAACQDYIAATRRQVTFEYVLLAGVNDTPERAQQLAELL 314
Query: 290 ETFQ--VVVNLIPFNPIGSVSQFRTSSDDKVSSFQKIL--RGSYNIRTTVRKQMGQDISG 345
+ VN IP N + + +R D + +F+ IL RG I +VR + G DI+
Sbjct: 315 APLKQFAHVNCIPVN--ATSAGYRPPGPDAIRAFRNILFERG---ISNSVRAERGDDIAA 369
Query: 346 ACGQLVVNLPDKISA 360
ACGQL D+ A
Sbjct: 370 ACGQLRTRFEDRRKA 384
>gi|298706960|emb|CBJ29779.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 531
Score = 223 bits (567), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 124/267 (46%), Positives = 172/267 (64%), Gaps = 28/267 (10%)
Query: 8 VFDGGIIRAEFEKAGIKQHFIPLIWKYVI-----ENPNCEWDEFP------SLPSAAYSL 56
V D ++ A + GIK+ +W Y + + +D F S P+ L
Sbjct: 12 VLDEALLSAALREEGIKELHAASVWHYALSEGKLHGSDATFDGFEDGKFYMSAPAPTGPL 71
Query: 57 LRSKFKPLTSTLHSVVDS--SDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGG 114
LR KF LTST VV++ S+D T KLLV+LQ+G VE VI+ K+NG
Sbjct: 72 LRRKFAVLTST---VVETQRSEDGTVKLLVRLQDGQMVETVII-------KHNGTH---- 117
Query: 115 PRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSNIRNVVFMGMGEP 174
PR+TLC+SSQVGC+M C FCATGTMG K +L++GEI+EQ++HASR+S IRNVVFMGMGEP
Sbjct: 118 PRTTLCVSSQVGCQMACTFCATGTMGLKGDLTAGEILEQVLHASRVSPIRNVVFMGMGEP 177
Query: 175 LNNYAALVEAVRIMT-GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQD 233
LNNY A++ ++R M F++SP+ IT+STVG+V + + D P LA+SLHAP Q+
Sbjct: 178 LNNYDAVLASIRGMADSRMFKLSPRHITLSTVGVVPRMKQLTIDAPETQLALSLHAPNQE 237
Query: 234 VRCQIMPAARAFPLEKLMNALKEYQKN 260
+R +I+P+ARA+ L+KLM+AL + +
Sbjct: 238 LRNRIVPSARAYRLDKLMDALDGHLRG 264
Score = 81.6 bits (200), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 39/99 (39%), Positives = 64/99 (64%), Gaps = 5/99 (5%)
Query: 259 KNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPI---GSVSQFRTSSD 315
+ + ++ IEY+ML GVND E+ +LG+LL+ V+VNLIP+NP GS +F+ ++
Sbjct: 333 RGAGRRALIEYVMLAGVNDTEECGRELGELLKGRNVLVNLIPYNPTYAPGS-EEFKEPTE 391
Query: 316 DKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNL 354
+ + F+ I+ + + T+R+ G+DI GACGQL V +
Sbjct: 392 EALQKFRAIVH-EHGLLVTIRRHHGRDIDGACGQLAVKV 429
>gi|405355231|ref|ZP_11024457.1| Ribosomal RNA large subunit methyltransferase N [Chondromyces
apiculatus DSM 436]
gi|397091573|gb|EJJ22375.1| Ribosomal RNA large subunit methyltransferase N [Myxococcus sp.
(contaminant ex DSM 436)]
Length = 366
Score = 223 bits (567), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 122/340 (35%), Positives = 188/340 (55%), Gaps = 23/340 (6%)
Query: 31 IWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHSVVDSSDDVTTKLLVKLQNGG 90
+W + +DE L LR + + +H SSD T KLL++L +G
Sbjct: 41 LWTALYRRHATSFDELEGLKPELVRALRERARLSHLGVHHESFSSDGFTHKLLLRLDDGQ 100
Query: 91 FVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEI 150
+E V+MR+ R+T+CIS+Q GC MGC FCATG MG +L+ GEI
Sbjct: 101 TIETVLMRFKG--------------RATVCISTQAGCAMGCVFCATGQMGLSRHLTPGEI 146
Query: 151 VEQLVHASRL-----SNIRNVVFMGMGEPLNNYAALVEAVRIMT-GLPFQVSPKRITVST 204
V Q++H +R+ ++RNVV MGMGEPL+NY + A+ ++ + + P+ IT+ST
Sbjct: 147 VGQVLHVNRVLRDANESLRNVVLMGMGEPLHNYEHTMAAIDVLVDAMGLAMGPRFITLST 206
Query: 205 VGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQK 264
VG+V I + + ++LAVSLH R ++P R +PL++LM+A + Y + ++
Sbjct: 207 VGVVPGIRRLADEERPIHLAVSLHGATDAERAALVPVGRRWPLDELMDACRYYSEKRGRR 266
Query: 265 IFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKI 324
IF E+ ++ G ND +HAH LG+LL VN+IP NP S + V +FQ +
Sbjct: 267 IFFEWTLIAGRNDTAEHAHTLGQLLRGMDAHVNVIPLNPTVGYDGG-PSRPESVRAFQDV 325
Query: 325 LRGSYNIRTTVRKQMGQDISGACGQLVVNLPDKISAKSTP 364
L SY + +TVR++ G DI CGQL ++ ++ + +S P
Sbjct: 326 LT-SYAVPSTVRQRRGIDIDAGCGQLKADV-ERRARRSLP 363
>gi|66806177|ref|XP_636811.1| hypothetical protein DDB_G0288255 [Dictyostelium discoideum AX4]
gi|60465214|gb|EAL63309.1| hypothetical protein DDB_G0288255 [Dictyostelium discoideum AX4]
Length = 407
Score = 222 bits (565), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 136/358 (37%), Positives = 198/358 (55%), Gaps = 41/358 (11%)
Query: 12 GIIRAEFE----KAGIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTS- 66
GI + E E K G ++ IW ++ + + F + ++SK++
Sbjct: 53 GIQKDELEDKVLKLGYPKYLSEQIWAFMYNKGIVDINSFERVSKEKREEIKSKYEVNIGE 112
Query: 67 -TLHSVVDSSDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQV 125
T H + S D T KLL+ +G VE+V + P G R TLC+SSQV
Sbjct: 113 ITKHQL---SVDGTRKLLISF-DGAEVESVFI--------------PEGKRGTLCVSSQV 154
Query: 126 GCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN----------IRNVVFMGMGEPL 175
GC C FC TGT F NL++ EIV Q++ + N + N+VFMG GEP
Sbjct: 155 GCTFACTFCHTGTQKFIRNLTASEIVSQVIATRHVLNDFTDSSIKRTLTNIVFMGQGEPF 214
Query: 176 NNYAALVEAVRIMT---GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQ 232
NY + +A++I+T GL + +ITVST G+V I++ SD PG+ LA+SLH+
Sbjct: 215 YNYRNVSKAIKIITDPNGLA--IGKSKITVSTSGVVPLIDRLGSDFPGIGLAISLHSAND 272
Query: 233 DVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETF 292
R +I+PA R +P+ +L+ A ++ KN +++I IEY+ML GVND EQ A+ L KL ++F
Sbjct: 273 KTRSEIVPANRQWPISELVEACIKFSKNCKERITIEYVMLKGVNDSEQDAYDLVKLSKSF 332
Query: 293 QVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 350
VNLIPFNP SQ+++SS + +S F KIL I+ T+R+ G+DI ACGQL
Sbjct: 333 PSFVNLIPFNPWPG-SQYKSSSKETISQFSKIL-DDKGIKVTIRQPRGRDILAACGQL 388
>gi|46446329|ref|YP_007694.1| hypothetical protein pc0695 [Candidatus Protochlamydia amoebophila
UWE25]
gi|46399970|emb|CAF23419.1| conserved hypothetical protein [Candidatus Protochlamydia
amoebophila UWE25]
Length = 330
Score = 222 bits (565), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 119/317 (37%), Positives = 181/317 (57%), Gaps = 22/317 (6%)
Query: 43 WDEFPSLPSAAYSLLRSKFKPLTSTLHSVVDSSDDVTTKLLVKLQNGGFVEAVIMRYDSS 102
WD+ +L + L + L +S D T K L +L++G VE+V++
Sbjct: 12 WDKMSNLSQSLREKLAKHIRLPVLELVRYTESIDQETIKFLWRLRDGNLVESVLIL---- 67
Query: 103 LGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVH-----A 157
G R T+C+SSQVGC C FCA+G GF NL EI+EQ++ +
Sbjct: 68 ----------SGIRRTVCVSSQVGCPAKCAFCASGQQGFFRNLRPTEIIEQILQINAWLS 117
Query: 158 SRLSNIRNVVFMGMGEPLNNYAALVEAVRIMTGLPF-QVSPKRITVSTVGIVHAINKFHS 216
S+ + +VV+MGMGEPL NY ++V ++R+++ F +S +RITVSTVG+V I +
Sbjct: 118 SKGEKVSHVVYMGMGEPLKNYESVVASIRVLSHPDFCNISQRRITVSTVGVVEGIKRLSK 177
Query: 217 DLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVN 276
+ +NL +SLHAP Q +R +I+P AR +PLE+++ ++ EY + +++ I EY +L G+N
Sbjct: 178 EGLKVNLVLSLHAPNQHIRKKIIPYARKYPLEEILESMDEYAQKTKRDITFEYTLLAGIN 237
Query: 277 DEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVR 336
D HAH+L LL+ Q VNLIP+NPI + + + + F+ +L GS+ I T R
Sbjct: 238 DHPDHAHELAHLLKGKQCTVNLIPYNPIPGL-RLKRPEKKAIKQFRSVLYGSH-IVNTCR 295
Query: 337 KQMGQDISGACGQLVVN 353
G DI ACGQL +
Sbjct: 296 YTKGDDIGAACGQLALQ 312
>gi|402847470|ref|ZP_10895754.1| 23S rRNA m2A2503 methyltransferase [Porphyromonas sp. oral taxon
279 str. F0450]
gi|402266328|gb|EJU15767.1| 23S rRNA m2A2503 methyltransferase [Porphyromonas sp. oral taxon
279 str. F0450]
Length = 349
Score = 221 bits (564), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 130/315 (41%), Positives = 181/315 (57%), Gaps = 33/315 (10%)
Query: 44 DEFPSLPSAAYSLLRSKF-----KPLTSTLHSVVDSSDDVTTKLLVKLQNGGFVEAVIMR 98
DE +L A +LL ++ P+ S L S D T K L + GG VEAV +
Sbjct: 46 DEMTNLSKANRTLLAERYTVGRTAPVMSQL------SKDGTRKYLFAVSTGGLVEAVFI- 98
Query: 99 YDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHAS 158
P R+TLCISSQVGCKM C FC TG GFK NLSSGEI+ Q++
Sbjct: 99 -------------PDKDRATLCISSQVGCKMDCLFCMTGKQGFKGNLSSGEIINQVLSVE 145
Query: 159 RLSNIRNVVFMGMGEPLNNYAALVEAVRIMT---GLPFQVSPKRITVSTVGIVHAINKFH 215
+++ NVV+MGMGEPL+N +++++ ++T GL + SPKRIT+STVG+ + +F
Sbjct: 146 ESASLTNVVYMGMGEPLDNATNVLKSISVLTSAWGLGW--SPKRITLSTVGVRRGLERFL 203
Query: 216 SDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGV 275
S+ +LAVSLH P + R ++MPA PLE + ++E Q+++ EYI+ DGV
Sbjct: 204 SETT-CHLAVSLHNPFHEGRLELMPAEGGLPLEDTLQMIREADFTGQRRVSFEYIVFDGV 262
Query: 276 NDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTV 335
ND ++HA +L +LL +NLIPF+ I V R S DK+ F++ L S TT+
Sbjct: 263 NDSDEHAAELARLLRGIPCRINLIPFHQIPDVP-LRPLSRDKMEHFKRQLE-SRGYTTTI 320
Query: 336 RKQMGQDISGACGQL 350
R G+DIS ACG L
Sbjct: 321 RTSRGEDISAACGML 335
>gi|406986564|gb|EKE07127.1| hypothetical protein ACD_18C00179G0011 [uncultured bacterium]
Length = 339
Score = 221 bits (563), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 126/332 (37%), Positives = 193/332 (58%), Gaps = 30/332 (9%)
Query: 32 WKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHSVVDSSDDVTTKLLVKLQNGGF 91
W+ V + +WDE +LP A L+ + PL + DS+ TTK L+ L++G
Sbjct: 22 WQAVFVDLIEDWDENTTLPKAIRDRLKEEC-PL-EIKSTAFDSNKTDTTKALILLEDGSQ 79
Query: 92 VEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIV 151
+E V+M + R+T+C+SSQVGC +GC FCATGT+G NL+ EIV
Sbjct: 80 IETVLMMHKDG-------------RNTVCVSSQVGCPVGCVFCATGTLGLGRNLTVSEIV 126
Query: 152 EQLVHASRL--------SNIRNVVFMGMGEPLNNYAALVEAVRIMTGL-PFQVSPKRITV 202
Q++ R + I N+V+MGMGEP NY ++ +++++ F + + I+V
Sbjct: 127 LQVLFFGRYLKKNYKENTRITNIVYMGMGEPFMNYDNVMASIKLLNDKDAFNIGARHISV 186
Query: 203 STVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQ 262
ST G+V I KF + LNLA+SLHAP +R ++MP + F +EK+M A++EY+ +
Sbjct: 187 STSGVVTGIKKFAKEPLQLNLAISLHAPNDALRSELMPINKRFGIEKVMAAVEEYKNDRG 246
Query: 263 QKIFIEYIMLDGVNDEEQHAHQLGKLL--ETFQVVVNLIPFNPIGSVSQFRTSSDDKVSS 320
++I EY+M+DG+ND E+HA QL +LL +T +VNLI +NP G +F+ S +
Sbjct: 247 RQIMFEYLMMDGINDREEHARQLIRLLGEDTSLYMVNLIRYNPTG---KFKPSLTQNIKK 303
Query: 321 FQKILRGSYNIRTTVRKQMGQDISGACGQLVV 352
F+ IL + I+ + R GQDI+ ACGQL +
Sbjct: 304 FKNILMRA-GIKVSERFAFGQDINAACGQLAL 334
>gi|406927611|gb|EKD63617.1| hypothetical protein ACD_51C00246G0004 [uncultured bacterium]
Length = 340
Score = 219 bits (559), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 130/344 (37%), Positives = 194/344 (56%), Gaps = 22/344 (6%)
Query: 14 IRAEFEKAGIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHSVVD 73
++A FE G + V + ++ + +LP L L+
Sbjct: 7 LKAIFEAQGHPSFRANQLLHDVCQRGVADYKDMSNLPVTLRDYLNENLPILSIEEKQSSV 66
Query: 74 SSDDVTTKLLVKLQ-NGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCN 132
+ D K+L + + +G +EAV+MR+ R T+C+SSQVGC MGC+
Sbjct: 67 AVDGSVRKVLFRCKKDGKKIEAVLMRFKDG-------------RRTVCVSSQVGCAMGCS 113
Query: 133 FCATGTMGFKSNLSSGEIVEQLVH-ASRL----SNIRNVVFMGMGEPLNNYAALVEAVRI 187
FCATG MGFK NL+ EI +Q+++ AS + I NVVFMGMGEP NNY ++ AVR
Sbjct: 114 FCATGKMGFKRNLTYEEISDQVLYFASDIRSYGETISNVVFMGMGEPFNNYDNVMRAVRF 173
Query: 188 MT-GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFP 246
+ + + IT+ST G+V I K D +NLA+SLHAP Q++R +MP A+ +
Sbjct: 174 LNDARGLNIGARNITLSTSGVVPGILKLMDDGLQVNLAISLHAPNQELRESMMPVAKKYG 233
Query: 247 LEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGS 306
L++LM+A+ +Y + +++ EY+M+ GVND+ AHQLG L+E VNLIP+N +
Sbjct: 234 LDELMDAVTKYTNKTHRRVSYEYVMIAGVNDDLSLAHQLGNLIEGQLCHVNLIPYN-LTD 292
Query: 307 VSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 350
++F+ S + K+ F KIL +Y + TT+R +GQDI ACGQL
Sbjct: 293 GNKFKRSLNRKMDDFVKILE-TYRVPTTIRVSLGQDIDAACGQL 335
>gi|373856266|ref|ZP_09599011.1| radical SAM enzyme, Cfr family [Bacillus sp. 1NLA3E]
gi|372454103|gb|EHP27569.1| radical SAM enzyme, Cfr family [Bacillus sp. 1NLA3E]
Length = 348
Score = 219 bits (558), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 118/328 (35%), Positives = 185/328 (56%), Gaps = 24/328 (7%)
Query: 31 IWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHSVVDSSDDVTTKLLVKLQNGG 90
+W ++ ++ E + S LL F T H + S D T K L KLQ+G
Sbjct: 31 VWDWLYRKRVTDFSEMIDVNSDCIQLLADHFVIQTLNEH-IKQESADGTIKFLFKLQDGN 89
Query: 91 FVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEI 150
+E V+MR+ L ++C+++QVGC +GC+FCA+G + +LSSGEI
Sbjct: 90 LIETVLMRHKYGL--------------SVCVTTQVGCNIGCSFCASGLLVKNRDLSSGEI 135
Query: 151 VEQLV-------HASRLSNIRNVVFMGMGEPLNNYAALVEAVRIMTGLP-FQVSPKRITV 202
VEQ++ H + + ++V MG+GEP +N+ LV ++I+ +++ + ITV
Sbjct: 136 VEQIMKVQLHLDHLEKGEKVSHIVVMGIGEPFDNFENLVNFLKIIIDQKGLEIAARHITV 195
Query: 203 STVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQ 262
ST G+ I F +NLA+SLHAP ++R +IM RA+PLE+LM A+ Y +N+
Sbjct: 196 STSGLAEKIYDFTDTKLPVNLAISLHAPNNELRSRIMKINRAYPLEELMKAVDYYLENTN 255
Query: 263 QKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQ 322
++I EYI+L VND + A QL L+E + VNLIP+NP+G SQ++ S ++ V +F
Sbjct: 256 RRITFEYILLKDVNDHREEAQQLANLIENKKSYVNLIPYNPVGEHSQYQRSDEESVLAFY 315
Query: 323 KILRGSYNIRTTVRKQMGQDISGACGQL 350
L+ + + +R++ G DI ACGQL
Sbjct: 316 DTLKKN-GVNCVIRQEHGTDIDAACGQL 342
>gi|386875874|ref|ZP_10118027.1| radical SAM enzyme, Cfr family [Candidatus Nitrosopumilus salaria
BD31]
gi|386806326|gb|EIJ65792.1| radical SAM enzyme, Cfr family [Candidatus Nitrosopumilus salaria
BD31]
Length = 351
Score = 219 bits (558), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 129/342 (37%), Positives = 200/342 (58%), Gaps = 32/342 (9%)
Query: 25 QHFIPLIWKYVIENPNCEWDEFP-----SLPSAAYSLLRSKFKPLTSTLHSVVDSSDDVT 79
Q +PL +K+ E + P L +A Y++ +K +H VV S D T
Sbjct: 28 QILLPLYYKF--PKDISEIKQLPKQMREELIAAGYTIGSAK------EIHQVV-SEDGDT 78
Query: 80 TKLLVKLQNGGFVEAVIMRYD-SSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGT 138
TKLL+KL N VEAV+M+YD S +G G PRST+C+S+Q+GC MGC FCATG
Sbjct: 79 TKLLLKLTNDSSVEAVLMQYDPSKIG--------GHPRSTICVSTQIGCAMGCVFCATGQ 130
Query: 139 MGFKSNLSSGEIVEQLVHASRL-----SNIRNVVFMGMGEPLNNYAALVEAVRIMT-GLP 192
MGF++NL + IV Q++H + L ++ N+VFMGMGEP+ NY ++ AVRI+T
Sbjct: 131 MGFETNLKAEHIVSQVIHFAELLQKRGEHVTNLVFMGMGEPMANYDEMIRAVRILTHDRG 190
Query: 193 FQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMN 252
F + + IT+ST+GI I K + + LA+SLHAP ++R +++P A +E ++
Sbjct: 191 FGLGQRHITISTIGIRSGIEKLADENLQIGLAISLHAPNNELRKKLVPTAIPNSVEDIIE 250
Query: 253 ALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRT 312
+ + Y K + +++ EY ++ G+ND + A +L +LL+ VNLIP NP + F+
Sbjct: 251 SGRYYFKKTGRRVTFEYALMAGINDSPEIAQELARLLKGNGSHVNLIPINP--TAGDFKR 308
Query: 313 SSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNL 354
++ + F++IL + + TVR + G +IS ACGQL ++
Sbjct: 309 PTEKNIREFEQILSNA-GVNCTVRVEKGTEISAACGQLRTDI 349
>gi|407013702|gb|EKE27806.1| Ribosomal RNA large subunit methyltransferase N [uncultured
bacterium (gcode 4)]
Length = 355
Score = 219 bits (558), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 122/315 (38%), Positives = 177/315 (56%), Gaps = 22/315 (6%)
Query: 44 DEFPSLPSAAYSLLRSKFKPLTSTLHSVVDSSDDVTTKLLVKLQNGGFVEAVIMRYDSSL 103
D+ ++ + ++L + F L + S D TTKLL + + F+EAVIMR+ S
Sbjct: 40 DDITTISKVSKTILNNNFFYSCLKLKKNITSEDWQTTKLLFETTDWNFLEAVIMRHLSW- 98
Query: 104 GKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRL--- 160
R+TLC+SSQVGC M C FCAT + F NL EIVEQ++ AS+L
Sbjct: 99 ------------RNTLCVSSQVGCPMACAFCATWKLWFTRNLEFYEIVEQILFASKLLDS 146
Query: 161 --SNIRNVVFMGMGEPLNNYAALVEAVRIMTGL-PFQVSPKRITVSTVGIVHAINKFHSD 217
N+RN+V+M M EP NY + +++ I+ S +R+T+ST IV I KF +D
Sbjct: 147 EWKNLRNIVYMWMWEPFLNYENVKKSIEIVCSQNKLDFSNRRVTISTCWIVPWIKKFWTD 206
Query: 218 LPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVND 277
P +LA+SLHA ++R IMP +PL LM AL+EY + +K+F EYIM+ VND
Sbjct: 207 FPQTSLAISLHAATDELRKSIMPCNIMYPLSMLMPALEEYVAKTNKKVFYEYIMIAWVND 266
Query: 278 EEQHAHQLGKLLETFQVVVNLIPFN--PIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTV 335
++A L +LL VN IP+N S S+ +++S ++ FQ IL + +++T+
Sbjct: 267 SLENAKDLAELLRWKLAHVNFIPYNEGEGDSESEMKSTSKSRIKEFQNILFDVW-LQSTI 325
Query: 336 RKQMGQDISGACGQL 350
R MG DI AC QL
Sbjct: 326 RHTMGDDIDAACWQL 340
>gi|110834724|ref|YP_693583.1| Fe-S-cluster redox protein [Alcanivorax borkumensis SK2]
gi|123050394|sp|Q0VND7.1|RLMN_ALCBS RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|110647835|emb|CAL17311.1| conserved Fe-S-cluster redox protein, putative [Alcanivorax
borkumensis SK2]
Length = 381
Score = 219 bits (558), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 129/296 (43%), Positives = 172/296 (58%), Gaps = 30/296 (10%)
Query: 75 SDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFC 134
S D T K + ++ NGG VE V + P G R TLC+SSQVGC + C+FC
Sbjct: 77 SRDGTRKWVFEMDNGGAVETVFI--------------PDGRRGTLCVSSQVGCAVDCSFC 122
Query: 135 ATGTMGFKSNLSSGEIVEQLVHASRLSN---------IRNVVFMGMGEPLNNYAALVEAV 185
+TG GF+ +++S EI+ Q+ ASR I NVV MGMGEPL NY ++ A+
Sbjct: 123 STGKQGFQRDMTSAEIIGQVWQASRAFGPRRNLGQHPITNVVMMGMGEPLLNYDKVLTAM 182
Query: 186 RIMT-GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARA 244
RIM L + + KRITVST G++ +N+ DL ++LAVSLHAP ++R Q++P R
Sbjct: 183 RIMKDDLGYGIGKKRITVSTSGVIPKMNQLSEDL-DVSLAVSLHAPNDELRNQLVPLNRK 241
Query: 245 FPLEKLMNALKEYQKNSQQK---IFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPF 301
+PL+ LM A K Y KN + I +EY+ML VND+ +HA QL KLL V VNLIPF
Sbjct: 242 YPLKDLMAACKRYSKNITHRHNTITMEYVMLRDVNDKPEHARQLVKLLNGIPVKVNLIPF 301
Query: 302 NPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDK 357
NP R+ +D + F K L + + TTVR G DI ACGQLV + D+
Sbjct: 302 NPFPHAGYERSRKND-ILEFHKYLNDN-GVMTTVRTTRGDDIDAACGQLVGQVKDR 355
>gi|254427443|ref|ZP_05041150.1| radical SAM enzyme, Cfr family [Alcanivorax sp. DG881]
gi|196193612|gb|EDX88571.1| radical SAM enzyme, Cfr family [Alcanivorax sp. DG881]
Length = 380
Score = 219 bits (557), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 129/296 (43%), Positives = 172/296 (58%), Gaps = 30/296 (10%)
Query: 75 SDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFC 134
S D T K + ++ NGG VE V + P G R TLC+SSQVGC + C+FC
Sbjct: 77 SRDGTRKWVFEMDNGGAVETVFI--------------PDGRRGTLCVSSQVGCAVDCSFC 122
Query: 135 ATGTMGFKSNLSSGEIVEQLVHASRLSN---------IRNVVFMGMGEPLNNYAALVEAV 185
+TG GF+ +++S EI+ Q+ ASR I NVV MGMGEPL NY ++ A+
Sbjct: 123 STGKQGFQRDMTSAEIIGQVWQASRAFGPRRNLGQHPITNVVMMGMGEPLLNYDKVLTAM 182
Query: 186 RIMT-GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARA 244
RIM L + + KRITVST G++ +N+ DL ++LAVSLHAP ++R Q++P R
Sbjct: 183 RIMKDDLGYGIGKKRITVSTSGVIPKMNQLSEDLD-VSLAVSLHAPNDELRNQLVPLNRK 241
Query: 245 FPLEKLMNALKEYQKNSQQK---IFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPF 301
+PL+ LM A K Y KN + I +EY+ML VND+ +HA QL KLL V VNLIPF
Sbjct: 242 YPLKDLMAACKSYSKNITHRHNTITMEYVMLRDVNDKPEHARQLVKLLNGIPVKVNLIPF 301
Query: 302 NPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDK 357
NP R+ +D + F K L + + TTVR G DI ACGQLV + D+
Sbjct: 302 NPFPHAGYERSRKND-ILEFHKYLNDN-GVMTTVRTTRGDDIDAACGQLVGQVKDR 355
>gi|407465360|ref|YP_006776242.1| radical SAM protein [Candidatus Nitrosopumilus sp. AR2]
gi|407048548|gb|AFS83300.1| radical SAM protein [Candidatus Nitrosopumilus sp. AR2]
Length = 353
Score = 219 bits (557), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 129/351 (36%), Positives = 202/351 (57%), Gaps = 26/351 (7%)
Query: 13 IIRAEFEKAGIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTST--LHS 70
+I + + Q +PL +K+ P + D+ P LP L + + S +H
Sbjct: 16 VINMGYPRYRADQILLPLYYKF----PK-QLDDIPQLPKKLREELTAAGYTIGSAKEIHR 70
Query: 71 VVDSSDDVTTKLLVKLQNGGFVEAVIMRYD-SSLGKYNGKPRPGGPRSTLCISSQVGCKM 129
+V S D TTKLL++L N VE V+M+YD + +G G PRST+C+S+Q+GC M
Sbjct: 71 IV-SDDGDTTKLLLELSNDNSVETVLMQYDPTKIG--------GHPRSTVCVSTQIGCAM 121
Query: 130 GCNFCATGTMGFKSNLSSGEIVEQLVH-----ASRLSNIRNVVFMGMGEPLNNYAALVEA 184
GC FCATG MGF++NL + IV Q++H R ++ N+VFMGMGEP+ NY ++ A
Sbjct: 122 GCVFCATGQMGFETNLKAEHIVSQVIHFAEILEKRGEHVTNLVFMGMGEPMANYDEMIRA 181
Query: 185 VRIMT-GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAAR 243
V+I+T F + + IT+ST+GI I + + + LA+SLHAP ++R +++P A
Sbjct: 182 VKILTHDRGFGLGQRHITISTIGIRSGIERLAEENLQIGLAISLHAPNNELRKKLVPTAS 241
Query: 244 AFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNP 303
+E+++ + Y K + +++ EY ++ G+ND + A +L +LL+ VNLIP NP
Sbjct: 242 PNSVEEIIELGRNYFKKTGRRVTFEYALMAGINDSPEIATELARLLKGNGSHVNLIPINP 301
Query: 304 IGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNL 354
+ F+ S+ V F++IL + I TVR + G +IS ACGQL +L
Sbjct: 302 --TAGDFKRPSEKNVLEFERILSDA-GINCTVRIEKGTEISAACGQLRTDL 349
>gi|383787538|ref|YP_005472107.1| 23S rRNA m(2)A-2503 methyltransferase [Fervidobacterium pennivorans
DSM 9078]
gi|383110385|gb|AFG35988.1| 23S rRNA m(2)A-2503 methyltransferase [Fervidobacterium pennivorans
DSM 9078]
Length = 353
Score = 219 bits (557), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 124/339 (36%), Positives = 194/339 (57%), Gaps = 20/339 (5%)
Query: 17 EFEKAGIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHSVVDSSD 76
EF K G+++ + +W ++ + +++ +L +LL +F L + S
Sbjct: 16 EFSKFGLEKFRVDQVWDWIFKKKAFDFNGMTNLSKEHRALLSERFYIGIPELLDMQISKI 75
Query: 77 DVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCAT 136
D TTK L +L++G +E+V++ + R T CISSQVGC + C FCAT
Sbjct: 76 DKTTKFLWQLEDGNTIESVLLFHPD--------------RVTACISSQVGCPVKCAFCAT 121
Query: 137 GTMGFKSNLSSGEIVEQLV--HASRLSNIRNVVFMGMGEPLNNYAALVEAVRIMTGLPFQ 194
G G+ NLS+GEIV Q++ R NI N+V+MGMGEPL NY +V++VRI+ +
Sbjct: 122 GQSGYVRNLSAGEIVAQVIAMEKERRVNIGNIVYMGMGEPLLNYNEVVKSVRILNHKKGK 181
Query: 195 -VSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNA 253
+S +RI++STVGI I + +DLP + LA+SLHAP R I+P R + +E++++A
Sbjct: 182 NISMRRISISTVGIPEKIVQLANDLPEVKLAISLHAPTNYKRDLIIPMNRKYSVEEIIHA 241
Query: 254 LKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTS 313
+KEYQK ++ ++ EYI++ ND A +L +LL VNLIP NP+ + S+ +
Sbjct: 242 VKEYQKITKNRVTFEYILIREFNDFVDDAEKLAELLRGIGAYVNLIPVNPVETDSEIKME 301
Query: 314 SDDK--VSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 350
+ F++IL +NI +R++ G DI ACGQL
Sbjct: 302 RPHHWAIERFKEIL-DKHNIENEIRREKGTDIDAACGQL 339
>gi|407004067|gb|EKE20529.1| hypothetical protein ACD_7C00539G0003 [uncultured bacterium]
Length = 340
Score = 218 bits (555), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 123/334 (36%), Positives = 193/334 (57%), Gaps = 19/334 (5%)
Query: 20 KAGIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHSVVDSSDDVT 79
K K + I +++ + +DE +L + L+ F+ + TL V S D T
Sbjct: 17 KNNCKTFHLKQINEWIYQKYPSSFDEMSNLSLELRNKLKENFQLYSLTLKKEVSSKDKQT 76
Query: 80 TKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTM 139
K L +L++G F+E V++ R TLC+S+QVGC + C FCA+G
Sbjct: 77 KKYLFQLEDGFFIETVLI--------------LSEKRKTLCLSTQVGCPIKCTFCASGKN 122
Query: 140 GFKSNLSSGEIVEQLVHASRLSNIR--NVVFMGMGEPLNNYAALVEAV-RIMTGLPFQVS 196
GF NL S EI+EQ++H S+ + + ++VFMGMGEPL N A+VE++ +I F +S
Sbjct: 123 GFYRNLKSYEILEQIIHVSKKISDKPTHIVFMGMGEPLLNLDAVVESIEKISDKTKFNIS 182
Query: 197 PKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKE 256
+RITVSTVGI+ I K +NLA+S+HAP ++R +I+P ++ + L+ L+N L+
Sbjct: 183 QRRITVSTVGILENIRKLKERNLKVNLALSVHAPNDELRNKIIPFSKKYKLKDLINELRL 242
Query: 257 YQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDD 316
Y + +++ I EYI++D +ND +HA +L LL+ Q +NLIP+NPI S ++ +
Sbjct: 243 YFETTKRDISFEYILIDDLNDSIEHAKELAALLKNIQCSINLIPYNPIDGFS-YKKPNSA 301
Query: 317 KVSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 350
KV+ F++ L N+ + R G DI+ ACGQL
Sbjct: 302 KVNKFKEYL-ACCNMVVSQRYTKGDDIAAACGQL 334
>gi|121998570|ref|YP_001003357.1| radical SAM protein [Halorhodospira halophila SL1]
gi|205829772|sp|A1WXZ3.1|RLMN_HALHL RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|121589975|gb|ABM62555.1| 23S rRNA m(2)A-2503 methyltransferase [Halorhodospira halophila
SL1]
Length = 359
Score = 218 bits (554), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 140/357 (39%), Positives = 196/357 (54%), Gaps = 25/357 (7%)
Query: 16 AEFEKAGIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHSVVDSS 75
A F+ G K+ I +++ + ++DE L A LR + + + +S
Sbjct: 22 AFFDTLGEKRFRARQIMQWLHQRHVYDFDEMTDLSKALRQRLREHARVGLPEVAADQQAS 81
Query: 76 DDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCA 135
D T K +V+L +G VEAV + P P R TLCISSQ GC MGC FCA
Sbjct: 82 DG-TRKWVVRLADGNCVEAVYI------------PEP--KRGTLCISSQAGCPMGCTFCA 126
Query: 136 TGTMGFKSNLSSGEIVEQLVHASRL----SNIRNVVFMGMGEPLNNYAALVEAVRIMT-G 190
TG GF NL++ EIV Q VH +R I N+VFMGMGEPL N+ ++ A R+ T
Sbjct: 127 TGEGGFSRNLTAAEIVGQ-VHVARQHLPEGAITNIVFMGMGEPLLNFDPVISASRVFTDD 185
Query: 191 LPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKL 250
F +S +R+T+ST G+VHAI + + ++LAVSLHAP ++R Q++P R PLE+L
Sbjct: 186 YGFVLSKRRVTISTSGVVHAIERMQR-VTDVSLAVSLHAPNNELRNQLVPLNRKNPLERL 244
Query: 251 MNALKEY-QKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQ 309
+ A Y + ++I EY+MLDGVND+++HA +L + L VNLIPFNP
Sbjct: 245 LPACHAYIAEKPHRRITWEYVMLDGVNDQDEHARELLQRLRGIPSKVNLIPFNPYPGARY 304
Query: 310 FRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDKISAKSTPPV 366
RT D +V F L + + T+R+ G DI GACGQLV + D ++K P
Sbjct: 305 GRT-PDRQVRRFADRLL-EHGLTATIRETRGDDIDGACGQLVGEIRDARASKVARPA 359
>gi|406873763|gb|EKD23850.1| hypothetical protein ACD_81C00165G0001 [uncultured bacterium]
Length = 335
Score = 217 bits (553), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 126/316 (39%), Positives = 185/316 (58%), Gaps = 28/316 (8%)
Query: 42 EWDEFPSLPSAAYSLLRSKFKPLTSTLHSVVDSSDDVTTKLLVKLQNGGFVEAVIMRYDS 101
+W E +LP L ++ PL + S D + K L+ L++ +EAV+M +
Sbjct: 32 DWSEAIALPEHLRKQL-AEACPLDIHAEETISSGD--SRKALIILEDELKIEAVLMMHK- 87
Query: 102 SLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRL- 160
G R+T+C+SSQVGC MGC FCATG +GFK NL++ EIVEQ+++ +R
Sbjct: 88 ------------GDRNTVCVSSQVGCPMGCLFCATGKLGFKRNLTADEIVEQVLYFARQL 135
Query: 161 ----SNIRNVVFMGMGEPLNNYAALVEAVRIMTGLP--FQVSPKRITVSTVGIVHAINKF 214
+ N+VFMGMGEP+ NY ++ A+RI+ P F + +R+++ST GI I KF
Sbjct: 136 KKENKRVTNIVFMGMGEPMVNYDNVMAAIRILNN-PNGFNLGARRMSISTSGIPEGIRKF 194
Query: 215 HSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDG 274
+ +NLA+SLHAP ++RC+IMP +R LE++M+AL+EY + +KI EYIM+
Sbjct: 195 AREGLEVNLALSLHAPNNELRCKIMPVSRRHSLEEVMDALREYVDITHRKIMFEYIMIKD 254
Query: 275 VNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTT 334
V D + AH+L KLL + VNLI +N F S+ +++ F++IL + I
Sbjct: 255 VTDTPELAHELVKLLSGWLGYVNLINYN---QTEMFAPSTRERIEEFKQILEDGH-ITVV 310
Query: 335 VRKQMGQDISGACGQL 350
R GQDI GACGQL
Sbjct: 311 QRYTFGQDIDGACGQL 326
>gi|404328938|ref|ZP_10969386.1| ribosomal RNA large subunit methyltransferase N [Sporolactobacillus
vineae DSM 21990 = SL153]
Length = 357
Score = 217 bits (552), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 128/343 (37%), Positives = 194/343 (56%), Gaps = 30/343 (8%)
Query: 20 KAGIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHSVVDSSDDVT 79
+ G K+ IW ++ ++E +L LL++ F + S + + D T
Sbjct: 20 RRGEKKFRAAQIWDWLYVKRAGSFEEMSNLSKKNIQLLKANF-TMRSLELEIAQKAKDGT 78
Query: 80 TKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTM 139
TK L +L +G +E V+M ++ L ++C++SQVGC +GC+FCA+G +
Sbjct: 79 TKFLFRLTDGNLIETVLMPHEYGL--------------SVCVTSQVGCNIGCSFCASGLL 124
Query: 140 GFKSNLSSGEIVEQLVHASRLSNIRN-------VVFMGMGEPLNNYAALVEAVRIM---T 189
+L+SGE+VEQL+ + + RN VV MG+GEP +NY +++ +RI+ T
Sbjct: 125 RKNRDLTSGEMVEQLLAIQKNLDGRNKEERVGHVVVMGIGEPFDNYENVMDFLRIINDQT 184
Query: 190 GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEK 249
GL + + ITVST GIV I +F +NLAVSLHAP ++R +IM RA+P+EK
Sbjct: 185 GLA--IGARHITVSTSGIVPKIYEFADIDWQVNLAVSLHAPNNELRSRIMKINRAYPIEK 242
Query: 250 LMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQ--VVVNLIPFNPIGSV 307
LM+A+ Y + + ++I EYIML VND ++ A QL KLLE + VNLIP+NP+
Sbjct: 243 LMDAVDYYLQKTNRRITFEYIMLKDVNDHKEEAIQLAKLLENKRHLAYVNLIPYNPVAEH 302
Query: 308 SQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 350
S+++ S + V F + L+ I VRK+ G DI ACGQL
Sbjct: 303 SEYQRSEKNTVGVFYETLK-RRGINAVVRKEFGTDIDAACGQL 344
>gi|325294881|ref|YP_004281395.1| ribosomal RNA large subunit methyltransferase N [Desulfurobacterium
thermolithotrophum DSM 11699]
gi|325065329|gb|ADY73336.1| Ribosomal RNA large subunit methyltransferase N [Desulfurobacterium
thermolithotrophum DSM 11699]
Length = 345
Score = 217 bits (552), Expect = 8e-54, Method: Compositional matrix adjust.
Identities = 127/334 (38%), Positives = 190/334 (56%), Gaps = 22/334 (6%)
Query: 22 GIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHSVVDSSDDVTTK 81
G + + I +++ + +DE ++ AA +L K L V + S D T K
Sbjct: 20 GFENYRAKQIAQWIYKKRVKSFDEMTNISKAARKVLSENAKIDVLKLVKV-EKSMDGTKK 78
Query: 82 LLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGF 141
L +L++G VE+V + P +TLC+S+QVGC +GC FC T GF
Sbjct: 79 YLFELEDGNRVESVFI--------------PEKDWNTLCVSTQVGCPVGCKFCLTAKDGF 124
Query: 142 KSNLSSGEIVEQLVHASRL----SNIRNVVFMGMGEPLNNYAALVEAVRIMTGLP-FQVS 196
NL++ EIV+Q +H R I NVVFMGMGEP N+ + +AV IMT +S
Sbjct: 125 TRNLTAAEIVDQYIHVQRDVGEDKRISNVVFMGMGEPFLNFENVKKAVEIMTDKNMLDLS 184
Query: 197 PKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKE 256
++IT+STVG+V I++ ++ + LA+SLHA +VR +I+P R +P+ ++M AL+
Sbjct: 185 TRKITISTVGVVPGIDRMAKEMNKVKLAISLHATTDEVREKIVPLNRKYPISEIMAALRR 244
Query: 257 YQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDD 316
Y ++ ++I IEY+ML+GVND + A +L KL++ V VNLIPFN + F+ SS +
Sbjct: 245 YPADNIRRIMIEYVMLEGVNDSVEDAKRLVKLVKGIPVKVNLIPFNSYPG-APFKPSSKE 303
Query: 317 KVSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 350
+ FQK+L +NI +R GQDIS ACG L
Sbjct: 304 QTEKFQKVL-WDHNIAAFIRDSRGQDISAACGML 336
>gi|374386248|ref|ZP_09643748.1| 23S rRNA methyltransferase [Odoribacter laneus YIT 12061]
gi|373224177|gb|EHP46517.1| 23S rRNA methyltransferase [Odoribacter laneus YIT 12061]
Length = 345
Score = 217 bits (552), Expect = 8e-54, Method: Compositional matrix adjust.
Identities = 123/332 (37%), Positives = 189/332 (56%), Gaps = 27/332 (8%)
Query: 31 IWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHSVVDSSDDVTTKLLVKLQNGG 90
IW+ +++ ++E +LP ++ LL++ + L + ++ D TTK L +G
Sbjct: 35 IWQKGVQD----FEEMTNLPKSSRELLKATYY-FDKLLPDCIQTASDGTTKTAWLLNDGN 89
Query: 91 FVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEI 150
+E+V++ PG + T+C+SSQ GC++GC FCATGT+GFK NL+ GEI
Sbjct: 90 RIESVLI--------------PGNEKYTVCVSSQAGCQLGCRFCATGTLGFKRNLTVGEI 135
Query: 151 VEQLVHASR-----LSNIRNVVFMGMGEPLNNYAALVEAV-RIMTGLPFQVSPKRITVST 204
V+Q+ HA + S++ N+VFMGMGEPL NY ++ A+ RI + +SP RITVST
Sbjct: 136 VDQVFHARKEAECSSSSLSNIVFMGMGEPLLNYDHVLSAIQRITSEKGLGMSPSRITVST 195
Query: 205 VGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQK 264
GI I + D NLAVSLH+ ++VR Q+MP RA+PL +L +L + + + +
Sbjct: 196 AGIPAKIRQLADDRVRFNLAVSLHSAKENVRSQLMPVNRAYPLAELAASLIYFVEKTGTR 255
Query: 265 IFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKI 324
EY++L +ND + A L + F V +N+I +NP+ S+FR S D + +F +
Sbjct: 256 PTFEYLLLHHINDSLEDARALADYCKQFPVKINIIEYNPVEG-SEFRHSPDKQRDAFVQF 314
Query: 325 LRGSYNIRTTVRKQMGQDISGACGQLVVNLPD 356
L N+ +RK G+DI ACGQL D
Sbjct: 315 LENR-NMVVHIRKSKGKDIDAACGQLANKRKD 345
>gi|442318307|ref|YP_007358328.1| radical SAM protein [Myxococcus stipitatus DSM 14675]
gi|441485949|gb|AGC42644.1| radical SAM protein [Myxococcus stipitatus DSM 14675]
Length = 360
Score = 217 bits (552), Expect = 8e-54, Method: Compositional matrix adjust.
Identities = 127/353 (35%), Positives = 190/353 (53%), Gaps = 31/353 (8%)
Query: 22 GIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHSVVDSSDDVTTK 81
G + H ++W + +E L LR+ + T H SSD T K
Sbjct: 26 GFRPHHRDVLWTGLYRQQARALEELEGLRPELRDRLRAHTRLGHLTTHHEAFSSDGYTHK 85
Query: 82 LLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGF 141
LL+KL++G +E V+MR+ R+T+CIS+Q GC MGC FCATG MG
Sbjct: 86 LLLKLEDGQTIETVLMRFKG--------------RATVCISTQAGCAMGCVFCATGQMGL 131
Query: 142 KSNLSSGEIVEQLVHASRL-----SNIRNVVFMGMGEPLNNYAALVEAVRIMTG-LPFQV 195
+L+ GEIV Q++H R+ +RN+V MGMGEPL+NY + A+ ++ L +
Sbjct: 132 SRHLTPGEIVGQILHVRRILRESGETLRNIVLMGMGEPLHNYDNTMAAMDVLVDPLGLAM 191
Query: 196 SPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALK 255
+P+ IT+STVG+V I + + + LAVSLH + R ++PA R +PL +LM+A +
Sbjct: 192 APRFITLSTVGVVPGIRRLADEDRPVQLAVSLHGATDEERAALVPAGRRWPLAELMDACR 251
Query: 256 EYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPI----GSVSQFR 311
Y +++IF E+ +++G ND +HA+ LG LL VN+IP NP G SQ
Sbjct: 252 YYIARRKRRIFFEWTLIEGRNDTPEHANTLGALLTGMDAHVNVIPLNPTVGYDGGPSQ-- 309
Query: 312 TSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDKISAKSTP 364
V +FQ L ++ I +TVR++ G DI CGQL + ++ S +S P
Sbjct: 310 ---PTSVRAFQDTLM-AHGIPSTVRQRRGIDIDAGCGQLKSAV-ERRSRRSLP 357
>gi|212704175|ref|ZP_03312303.1| hypothetical protein DESPIG_02230 [Desulfovibrio piger ATCC 29098]
gi|212672379|gb|EEB32862.1| 23S rRNA m2A2503 methyltransferase [Desulfovibrio piger ATCC 29098]
Length = 357
Score = 217 bits (552), Expect = 8e-54, Method: Compositional matrix adjust.
Identities = 133/332 (40%), Positives = 192/332 (57%), Gaps = 28/332 (8%)
Query: 31 IWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHSVVDSSDDVTTKLLVKLQNGG 90
+W+++ + ++D ++ A L + + +V SSDD TTK L++LQ+G
Sbjct: 30 VWQWIWQKMARDFDAMTNVSKACRERLAQCAEIRWPEIVTVEQSSDD-TTKFLLRLQDGA 88
Query: 91 FVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEI 150
VE V++ DS R G R T C+SSQVGC M C FC+TGTMGF+ N++ GEI
Sbjct: 89 EVETVLIPSDS---------REGVRRWTQCLSSQVGCAMACTFCSTGTMGFERNMTMGEI 139
Query: 151 VEQ-LVHASRLSN-------IRNVVFMGMGEPLNNYAALVEAVRIMT---GLPFQVSPKR 199
+ Q LV L + +RN+VFMGMGEPL N ++ A+ + GL F SP+R
Sbjct: 140 LGQILVAREHLGDTRPDWPVLRNLVFMGMGEPLLNLKNVMRALESLNNDKGLNF--SPRR 197
Query: 200 ITVSTVGIVHAINKFHSDLPGLN-LAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQ 258
ITVST GI + + GL LAVSLHAP Q++R +IMP A +PLE L+ ALK Y
Sbjct: 198 ITVSTCGIEKGLRELGES--GLAYLAVSLHAPTQELRARIMPKAARWPLEDLLQALKSYP 255
Query: 259 KNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKV 318
++++I EY++L GVND + A QL +++ + +NLI +NP ++ S ++V
Sbjct: 256 LKTRERITFEYLLLGGVNDGLEQARQLARVVSDVKGKLNLIVYNP-SEGDPYKAPSPERV 314
Query: 319 SSFQKILRGSYNIRTTVRKQMGQDISGACGQL 350
+F++ L NI +RK GQDI ACGQL
Sbjct: 315 LAFEQYL-WDRNITAIIRKSKGQDIKAACGQL 345
>gi|284045197|ref|YP_003395537.1| radical SAM enzyme, Cfr family [Conexibacter woesei DSM 14684]
gi|283949418|gb|ADB52162.1| radical SAM enzyme, Cfr family [Conexibacter woesei DSM 14684]
Length = 329
Score = 217 bits (552), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 120/324 (37%), Positives = 184/324 (56%), Gaps = 22/324 (6%)
Query: 31 IWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHSVVDSSDDVTTKLLVKLQNGG 90
+W++ ++E +LP+A + L + + TL +SD T K L +G
Sbjct: 23 VWEWTARGA-AGYEEMTNLPAALRATLAERVPFSSLTLQHEAHASDG-TVKALFSTHDGR 80
Query: 91 FVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEI 150
VEAV+MRY R +LC+SSQ GC + C FCATGTM F NL++ EI
Sbjct: 81 AVEAVLMRYKDG-------------RRSLCLSSQSGCPLTCTFCATGTMKFGRNLTASEI 127
Query: 151 VEQLVHASRLSNIRNVVFMGMGEPLNNYAALVEAVRIMTGLPFQVSPKRITVSTVGIVHA 210
++Q +H R+ + + VFMGMGEP+ N ++ A R + + ++ +R +STVG +
Sbjct: 128 LDQALHFRRIEEVDHCVFMGMGEPMMNLDHVLAACRALPSI--GITHRRTAISTVGWIPG 185
Query: 211 INKF-HSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEY 269
I + S++P + LA+SLHAP + +R QIMP +PL ++ A +++ + ++ +FIEY
Sbjct: 186 IERLTDSEMP-IRLALSLHAPDEALRSQIMPVNDRYPLRDVLRACRDFYEKKRRMVFIEY 244
Query: 270 IMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSY 329
+ML GVND A QL +LLE + VNLIP+NP S+ + SS + + +F+ +L +
Sbjct: 245 VMLGGVNDGYAQALQLARLLEPWMFKVNLIPYNPTDSI--YDGSSREAIETFRAVLE-EH 301
Query: 330 NIRTTVRKQMGQDISGACGQLVVN 353
I TVR G+DI ACGQL V
Sbjct: 302 GISATVRLTRGRDIDAACGQLAVK 325
>gi|319790295|ref|YP_004151928.1| radical SAM enzyme, Cfr family [Thermovibrio ammonificans HB-1]
gi|317114797|gb|ADU97287.1| radical SAM enzyme, Cfr family [Thermovibrio ammonificans HB-1]
Length = 345
Score = 216 bits (551), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 126/314 (40%), Positives = 183/314 (58%), Gaps = 24/314 (7%)
Query: 43 WDEFPSLPSAAYSLLRSKFKPLTSTLHSV-VDSSDDVTTKLLVKLQNGGFVEAVIMRYDS 101
+D+ +L A LL K + L V V+ S D T K L +L++G +E+V +
Sbjct: 41 FDQMTNLSKEARKLLSEKAQ--IDLLKLVKVEESKDGTRKYLFELEDGSRIESVFI---- 94
Query: 102 SLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRL- 160
P +TLC+S+QVGC GC FC T GF NL++GEIV+Q + R
Sbjct: 95 ----------PEKDWNTLCVSTQVGCPAGCRFCLTAKDGFTRNLTAGEIVDQYIQVQRDV 144
Query: 161 ---SNIRNVVFMGMGEPLNNYAALVEAVRIMTGLP-FQVSPKRITVSTVGIVHAINKFHS 216
I NVVFMGMGEPL N+ + +AV IMT +S +++TVSTVGIV I++
Sbjct: 145 GENRRISNVVFMGMGEPLLNFDNVKKAVEIMTHRDMLDLSTRKVTVSTVGIVPGIDRMAK 204
Query: 217 DLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVN 276
++ + LAVSLHA +VR ++P R +P+ ++M AL+ Y ++ ++I IEY+ML GVN
Sbjct: 205 EMNKVKLAVSLHATTDEVRNMLVPLNRKYPIGEIMAALRRYPADNNRRIMIEYVMLKGVN 264
Query: 277 DEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVR 336
D + A +L KL++ V VNLIPFNP ++F + +++ +FQK+L +NI +R
Sbjct: 265 DSLEDARRLVKLVKGIPVKVNLIPFNPYPG-AEFEPTPREQIEAFQKVL-WDHNIAAFIR 322
Query: 337 KQMGQDISGACGQL 350
GQDIS ACG L
Sbjct: 323 DSRGQDISAACGML 336
>gi|333384068|ref|ZP_08475712.1| ribosomal RNA large subunit methyltransferase N [Dysgonomonas gadei
ATCC BAA-286]
gi|332826949|gb|EGJ99746.1| ribosomal RNA large subunit methyltransferase N [Dysgonomonas gadei
ATCC BAA-286]
Length = 335
Score = 216 bits (551), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 118/279 (42%), Positives = 167/279 (59%), Gaps = 22/279 (7%)
Query: 75 SDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFC 134
S D T K L K +N +EAV++ P R+TLC+SSQVGCKM C FC
Sbjct: 66 SVDGTVKYLFKTENDKLIEAVMI--------------PEDDRATLCVSSQVGCKMNCLFC 111
Query: 135 ATGTMGFKSNLSSGEIVEQLVHASRLSNIRNVVFMGMGEPLNNYAALVEAVRIMT---GL 191
TG GF NL++ EI+ QL ++ NVVFMGMGEPL+NY L + + IMT G+
Sbjct: 112 MTGKQGFNGNLTANEILNQLYSVREAEDLTNVVFMGMGEPLDNYEQLKKTLEIMTADYGM 171
Query: 192 PFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLM 251
+ SPKRITVST G+ + +F D +LA+S+H+P ++ R IMPA +AFP+ +M
Sbjct: 172 AW--SPKRITVSTTGVTPKLKRFL-DESNAHLAISIHSPEKEQRLSIMPAEKAFPIAGVM 228
Query: 252 NALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFR 311
+ LKEY Q+++ EYIM D ND HA +L ++L + VNLI F+ I +V+ +
Sbjct: 229 DLLKEYDWTKQRRLSFEYIMFDNFNDSLVHAKELAQMLRGIECRVNLIRFHAIPNVN-LK 287
Query: 312 TSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 350
TS+ +K+ +F+ L S + +T+R G+DI ACG L
Sbjct: 288 TSTKEKMEAFRDYL-TSKGVTSTIRASRGEDIFAACGML 325
>gi|171909569|ref|ZP_02925039.1| YloN [Verrucomicrobium spinosum DSM 4136]
Length = 390
Score = 216 bits (549), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 122/333 (36%), Positives = 193/333 (57%), Gaps = 14/333 (4%)
Query: 22 GIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHSVVDSSDDVTTK 81
G K + + + ++V + +D +L L ++ L S ++ V+ S+D T K
Sbjct: 42 GEKPYRVKQVQEWVFQKRVESFDAMSNLSKPLQEALATRLT-LRSMTYARVEGSEDTTRK 100
Query: 82 LLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGF 141
L KL +G F+E V++ SL Y + R TLC+SSQVGC C FCA+G GF
Sbjct: 101 FLFKLYDGRFIETVLIPASPSL--YGER----SDRRTLCVSSQVGCAYDCKFCASGLAGF 154
Query: 142 KSNLSSGEIVEQLVHASRLSNIR--NVVFMGMGEPLNNYAALVEAVRIMTG-LPFQVSPK 198
NL++GEIVEQ++ +L+ R N+VFMGMGEPL N ++ A+ ++ + +
Sbjct: 155 TRNLTAGEIVEQILQVEKLAGARVDNLVFMGMGEPLANLTNVMRAIEVLNAQWGVNIGAR 214
Query: 199 RITVSTVGIVHAINKFHSDLP-GLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEY 257
+TVST G+ I+K +D P + LA+SLH +VR QIMP R +PLE+L AL+ +
Sbjct: 215 HMTVSTSGLAPQIHKL-ADFPLQVRLAISLHGASNEVRNQIMPVNRKYPLEELFPALEYW 273
Query: 258 QKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDK 317
+Q++ E+I++DGVND + A LG+ VNLIP+N + + Q++ S+ +
Sbjct: 274 NSKKKQRLTFEFILIDGVNDSLEQARLLGEHASRLDAKVNLIPYNTVEGL-QWKRPSERR 332
Query: 318 VSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 350
+F+ I+ S+++ TT+R++ G DI+ ACGQL
Sbjct: 333 QDTFRDIV-ASHDVMTTLRREKGHDIAAACGQL 364
>gi|440713152|ref|ZP_20893756.1| ribosomal RNA large subunit methyltransferase N [Rhodopirellula
baltica SWK14]
gi|436442084|gb|ELP35262.1| ribosomal RNA large subunit methyltransferase N [Rhodopirellula
baltica SWK14]
Length = 371
Score = 216 bits (549), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 125/343 (36%), Positives = 195/343 (56%), Gaps = 26/343 (7%)
Query: 18 FEKAGIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHSVVDSSDD 77
++ G K I +++ ++E LP+ + L F ++T +VV S D
Sbjct: 40 LQEQGQKPFRAKQIRRWLFSGRATSFEEMTDLPAKLRAQLEEHFAIFSAT-EAVVSKSKD 98
Query: 78 VTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATG 137
T K+LV+L +GG VE V++R GPR ++C+SSQVGC MGC FCA+G
Sbjct: 99 GTEKILVRLADGGEVECVLLR--------------DGPRRSICVSSQVGCAMGCVFCASG 144
Query: 138 TMGFKSNLSSGEIVEQLVH-ASRL---SNIRNVVFMGMGEPLNNYAALVEAV---RIMTG 190
G NL+ GEI+EQ++ RL + ++V MGMGEPL N ++ A+ R G
Sbjct: 145 LDGVDRNLTGGEILEQMLRLQQRLPADERLSHIVMMGMGEPLANLPGVLAALDVARSEDG 204
Query: 191 LPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKL 250
L +SP+RIT+STVG+ AI+K + NLAVSLHAP ++R +++P R +E +
Sbjct: 205 L--GISPRRITISTVGLPPAIDKLAAAGIPYNLAVSLHAPNDELRSELVPVNRKIGIEPV 262
Query: 251 MNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQF 310
+ A Y S +++ EY++L G+ND ++HA QL ++L V++N+IP+NP+ + +
Sbjct: 263 LQAADRYFHASGRRLTFEYVLLGGINDGDEHARQLSQILRGRSVMMNVIPYNPVAGLP-Y 321
Query: 311 RTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVN 353
RT S ++ F+ IL S + R++ G +I+ ACGQL N
Sbjct: 322 RTPSGAAIARFRAILE-SAGVNVNFRQRKGDEINAACGQLRRN 363
>gi|417301677|ref|ZP_12088822.1| ribosomal RNA large subunit methyltransferase N [Rhodopirellula
baltica WH47]
gi|327542013|gb|EGF28512.1| ribosomal RNA large subunit methyltransferase N [Rhodopirellula
baltica WH47]
Length = 365
Score = 215 bits (548), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 125/343 (36%), Positives = 194/343 (56%), Gaps = 26/343 (7%)
Query: 18 FEKAGIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHSVVDSSDD 77
++ G K I +++ ++E LP+ + L F +T +VV S D
Sbjct: 34 LQEQGQKPFRAKQIRRWLFSGRATSFEEMTDLPAKLRAQLEEHFAIFNAT-EAVVSKSKD 92
Query: 78 VTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATG 137
T K+LV+L +GG VE V++R GPR ++C+SSQVGC MGC FCA+G
Sbjct: 93 GTEKILVRLADGGEVECVLLR--------------DGPRRSICVSSQVGCAMGCVFCASG 138
Query: 138 TMGFKSNLSSGEIVEQLVH-ASRL---SNIRNVVFMGMGEPLNNYAALVEAV---RIMTG 190
G NL+ GEI+EQ++ RL + ++V MGMGEPL N ++ A+ R G
Sbjct: 139 LDGVDRNLTGGEILEQMLRLQQRLPADERLSHIVMMGMGEPLANLPGVLSALDVARSEDG 198
Query: 191 LPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKL 250
L +SP+RIT+STVG+ AI+K + NLAVSLHAP ++R +++P R +E +
Sbjct: 199 L--GISPRRITISTVGLPPAIDKLAAAGIPYNLAVSLHAPNDELRSELVPVNRKIGIEPV 256
Query: 251 MNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQF 310
+ A Y S +++ EY++L G+ND ++HA QL ++L V++N+IP+NP+ + +
Sbjct: 257 LQAADRYFHASGRRLTFEYVLLGGINDGDEHARQLSQILRGRSVMMNVIPYNPVAGLP-Y 315
Query: 311 RTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVN 353
RT S ++ F+ IL S + R++ G +I+ ACGQL N
Sbjct: 316 RTPSGAAIARFRAILE-SAGVNVNFRQRKGDEINAACGQLRRN 357
>gi|449133516|ref|ZP_21769067.1| ribosomal RNA large subunit methyltransferase N [Rhodopirellula
europaea 6C]
gi|448887798|gb|EMB18155.1| ribosomal RNA large subunit methyltransferase N [Rhodopirellula
europaea 6C]
Length = 365
Score = 215 bits (548), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 125/343 (36%), Positives = 194/343 (56%), Gaps = 26/343 (7%)
Query: 18 FEKAGIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHSVVDSSDD 77
++ G K I +++ ++E LP+ + L F +T +VV S D
Sbjct: 34 LQEQGQKPFRAKQIRRWLFSGRATSFEEMTDLPAKLRAQLEEHFAIFNAT-EAVVSKSKD 92
Query: 78 VTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATG 137
T K+LV+L +GG VE V++R GPR ++C+SSQVGC MGC FCA+G
Sbjct: 93 GTEKILVRLADGGEVECVLLR--------------DGPRRSICVSSQVGCAMGCVFCASG 138
Query: 138 TMGFKSNLSSGEIVEQLVH-ASRL---SNIRNVVFMGMGEPLNNYAALVEAV---RIMTG 190
G NL+ GEI+EQ++ RL + ++V MGMGEPL N ++ A+ R G
Sbjct: 139 LDGVDRNLTGGEILEQMLRLQQRLPADERLSHIVMMGMGEPLANLPGVLAALDVARSEDG 198
Query: 191 LPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKL 250
L +SP+RIT+STVG+ AI+K + NLAVSLHAP ++R +++P R +E +
Sbjct: 199 L--GISPRRITISTVGLPPAIDKLAAAGIPYNLAVSLHAPNDELRSELVPVNRKIGIEPV 256
Query: 251 MNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQF 310
+ A Y S +++ EY++L G+ND ++HA QL ++L V++N+IP+NP+ + +
Sbjct: 257 LQAADRYFHASGRRLTFEYVLLGGINDGDEHARQLSQILRGRSVMMNVIPYNPVAGLP-Y 315
Query: 311 RTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVN 353
RT S ++ F+ IL S + R++ G +I+ ACGQL N
Sbjct: 316 RTPSGAAIARFRAILE-SAGVNVNFRQRKGDEINAACGQLRRN 357
>gi|182415989|ref|YP_001821055.1| radical SAM protein [Opitutus terrae PB90-1]
gi|205829654|sp|B2A0B9.1|RLMN3_OPITP RecName: Full=Probable dual-specificity RNA methyltransferase RlmN
3; AltName: Full=23S rRNA
(adenine(2503)-C(2))-methyltransferase 3; AltName:
Full=23S rRNA m2A2503 methyltransferase 3; AltName:
Full=Ribosomal RNA large subunit methyltransferase N 3;
AltName: Full=tRNA (adenine(37)-C(2))-methyltransferase
3; AltName: Full=tRNA m2A37 methyltransferase 3
gi|177843203|gb|ACB77455.1| radical SAM enzyme, Cfr family [Opitutus terrae PB90-1]
Length = 374
Score = 215 bits (548), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 127/336 (37%), Positives = 188/336 (55%), Gaps = 28/336 (8%)
Query: 31 IWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHSVVDSSDDVTTKLLVKLQNGG 90
I +V + WD +LP + L F + +TL + S DVT KLL++L++G
Sbjct: 35 ILDWVYKKRARSWDGMTNLPKPLRTWLDDTFDLMPATL-VLNKQSADVTDKLLLELRDGS 93
Query: 91 FVEAVIMRY-DSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGE 149
+E VI+R +G+ + R T+CIS+QVGC MGC FCA+G G K +LS+GE
Sbjct: 94 LIETVIIRAPQEGVGQDHS-------RKTICISTQVGCAMGCVFCASGLAGLKRDLSAGE 146
Query: 150 IVEQLVHAS------------RLSNIRNVVFMGMGEPLNNYAALVEAVRIMT---GLPFQ 194
IV QL+ L++ N+V MGMGEPL NY AL+ A+ I+ GL F
Sbjct: 147 IVAQLLQVCYREDALTPRAHMELASFDNIVVMGMGEPLANYDALIRALTILNADWGLGF- 205
Query: 195 VSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNAL 254
+RITVST G+V I + + G LA+SLH +VR +IMP +AFPL KL+ A+
Sbjct: 206 -GARRITVSTSGLVPKILQLADEPLGFRLAISLHGATDEVREKIMPVNKAFPLAKLLPAV 264
Query: 255 KEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSS 314
K + + + I +E+I++DGVND + A +L + VNLIP+N + ++ ++ S
Sbjct: 265 KAFSEKHGRMITLEFILIDGVNDSLEQAEKLRDIALDLHAHVNLIPYNTVEGLA-WKRPS 323
Query: 315 DDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 350
+ F +LR + + T+R++ G DI ACGQL
Sbjct: 324 ITRQERFADVLR-ARRVSVTLRREKGHDIDAACGQL 358
>gi|421612644|ref|ZP_16053746.1| ribosomal RNA large subunit methyltransferase N [Rhodopirellula
baltica SH28]
gi|408496597|gb|EKK01154.1| ribosomal RNA large subunit methyltransferase N [Rhodopirellula
baltica SH28]
Length = 371
Score = 215 bits (548), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 125/343 (36%), Positives = 194/343 (56%), Gaps = 26/343 (7%)
Query: 18 FEKAGIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHSVVDSSDD 77
++ G K I +++ ++E LP+ + L F +T +VV S D
Sbjct: 40 LQEQGQKPFRAKQIRRWLFSGRATSFEEMTDLPAKLRAQLEEHFAIFNAT-EAVVSKSKD 98
Query: 78 VTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATG 137
T K+LV+L +GG VE V++R GPR ++C+SSQVGC MGC FCA+G
Sbjct: 99 GTEKILVRLADGGEVECVLLR--------------DGPRRSICVSSQVGCAMGCVFCASG 144
Query: 138 TMGFKSNLSSGEIVEQLVH-ASRL---SNIRNVVFMGMGEPLNNYAALVEAV---RIMTG 190
G NL+ GEI+EQ++ RL + ++V MGMGEPL N ++ A+ R G
Sbjct: 145 LDGVDRNLTGGEILEQMLRLQQRLPADERLSHIVMMGMGEPLANLPGVLSALDVARSEDG 204
Query: 191 LPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKL 250
L +SP+RIT+STVG+ AI+K + NLAVSLHAP ++R +++P R +E +
Sbjct: 205 L--GISPRRITISTVGLPPAIDKLAAAGIPYNLAVSLHAPNDELRSELVPVNRKIGIEPV 262
Query: 251 MNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQF 310
+ A Y S +++ EY++L G+ND ++HA QL ++L V++N+IP+NP+ + +
Sbjct: 263 LQAADRYFHASGRRLTFEYVLLGGINDGDEHARQLSQILRGRSVMMNVIPYNPVAGLP-Y 321
Query: 311 RTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVN 353
RT S ++ F+ IL S + R++ G +I+ ACGQL N
Sbjct: 322 RTPSGAAIARFRAILE-SAGVNVNFRQRKGDEINAACGQLRRN 363
>gi|32477801|ref|NP_870795.1| Fe-S oxidoreductase [Rhodopirellula baltica SH 1]
gi|81658686|sp|Q7UHU7.1|RLMN_RHOBA RecName: Full=Probable dual-specificity RNA methyltransferase RlmN;
AltName: Full=23S rRNA
(adenine(2503)-C(2))-methyltransferase; AltName:
Full=23S rRNA m2A2503 methyltransferase; AltName:
Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=tRNA (adenine(37)-C(2))-methyltransferase;
AltName: Full=tRNA m2A37 methyltransferase
gi|32448358|emb|CAD77872.1| conserved hypothetical protein-putative Fe-S-oxidoreductase
[Rhodopirellula baltica SH 1]
Length = 371
Score = 215 bits (547), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 125/343 (36%), Positives = 194/343 (56%), Gaps = 26/343 (7%)
Query: 18 FEKAGIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHSVVDSSDD 77
++ G K I +++ ++E LP+ + L F +T +VV S D
Sbjct: 40 LQEQGQKPFRAKQIRRWLFSGRATSFEEMTDLPAKLRAQLEEHFAIFNAT-EAVVSKSKD 98
Query: 78 VTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATG 137
T K+LV+L +GG VE V++R GPR ++C+SSQVGC MGC FCA+G
Sbjct: 99 GTEKILVRLADGGEVECVLLR--------------DGPRRSICVSSQVGCAMGCVFCASG 144
Query: 138 TMGFKSNLSSGEIVEQLVH-ASRL---SNIRNVVFMGMGEPLNNYAALVEAV---RIMTG 190
G NL+ GEI+EQ++ RL + ++V MGMGEPL N ++ A+ R G
Sbjct: 145 LDGVDRNLTGGEILEQMLRLQQRLPADERLSHIVMMGMGEPLANLPGVLSALDVARSEDG 204
Query: 191 LPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKL 250
L +SP+RIT+STVG+ AI+K + NLAVSLHAP ++R +++P R +E +
Sbjct: 205 L--GISPRRITISTVGLPPAIDKLAAAGIPYNLAVSLHAPNDELRSELVPVNRKIGIEPV 262
Query: 251 MNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQF 310
+ A Y S +++ EY++L G+ND ++HA QL ++L V++N+IP+NP+ + +
Sbjct: 263 LQAADRYFHASGRRLTFEYVLLGGINDGDEHARQLSQILRGRSVMMNVIPYNPVAGLP-Y 321
Query: 311 RTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVN 353
RT S ++ F+ IL S + R++ G +I+ ACGQL N
Sbjct: 322 RTPSGAAIARFRAILE-SAGVNVNFRQRKGDEINAACGQLRRN 363
>gi|319763716|ref|YP_004127653.1| radical sam enzyme, cfr family [Alicycliphilus denitrificans BC]
gi|317118277|gb|ADV00766.1| radical SAM enzyme, Cfr family [Alicycliphilus denitrificans BC]
Length = 374
Score = 215 bits (547), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 139/359 (38%), Positives = 196/359 (54%), Gaps = 41/359 (11%)
Query: 19 EKAGIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLT--STLHSVVD-SS 75
E+ G K+ +++++ + ++D+ L + LR K K S L ++ + +S
Sbjct: 18 ERLGEKRFRATQLFRWIHQRGASDFDQMSDLAKS----LREKLKGCAHVSGLQAISEHAS 73
Query: 76 DDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCA 135
D T K L + G VE V + P R TLCISSQ GC +GC FC+
Sbjct: 74 ADGTVKWLFDVGGGNAVETVFI--------------PEDDRGTLCISSQAGCAVGCRFCS 119
Query: 136 TGTMGFKSNLSSGEIVEQLVHASRLSN---------IRNVVFMGMGEPLNNYAALVEAVR 186
TG GF NL++GEIV QL HA + I NVV MGMGEPL NY+ALV A+R
Sbjct: 120 TGHQGFSRNLTTGEIVAQLWHAEHVLRQRRGDGERVISNVVMMGMGEPLQNYSALVPALR 179
Query: 187 IM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAF 245
IM + +S +R+TVST G+V +++ D P + LAVSLHAP ++R ++P R +
Sbjct: 180 IMLDDHGYGLSRRRVTVSTSGVVPMMDRLGRDCP-VALAVSLHAPNDELRDNLVPLNRKY 238
Query: 246 PLEKLMNALKEYQKNSQQK-IFIEYIMLDGVNDEEQHAHQLGKLLET------FQVVVNL 298
PL++L+ A + Y +++ + I EY MLDGVND+ +HA +L L+ NL
Sbjct: 239 PLQELLAACRRYLEHAPRDFITFEYCMLDGVNDQPEHARELIALVSRKAADGGVSCKFNL 298
Query: 299 IPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDK 357
IPFNP S R S VS+F K+L + I TTVRK G DI ACGQL ++ D+
Sbjct: 299 IPFNPF-PASGLRRSPAAAVSAFAKLLSDA-GIVTTVRKTRGDDIDAACGQLAGDVKDR 355
>gi|383453201|ref|YP_005367190.1| radical SAM protein [Corallococcus coralloides DSM 2259]
gi|380734154|gb|AFE10156.1| radical SAM protein [Corallococcus coralloides DSM 2259]
Length = 358
Score = 215 bits (547), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 116/285 (40%), Positives = 167/285 (58%), Gaps = 26/285 (9%)
Query: 74 SSDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNF 133
SSD +T KLL++L + +E V+MR+ R+T+C+S+Q GC MGC F
Sbjct: 76 SSDGLTHKLLLRLHDAQTIETVLMRFKG--------------RATVCVSTQAGCAMGCVF 121
Query: 134 CATGTMGFKSNLSSGEIVEQLVHASRL-----SNIRNVVFMGMGEPLNNYAALVEAVRIM 188
CATG MG +L+ GEIV Q++H +R+ +RN+V MGMGEPL+NY + AV I+
Sbjct: 122 CATGQMGLSRHLTPGEIVGQVLHVTRILRAQGEALRNIVLMGMGEPLHNYEHTMAAVDIL 181
Query: 189 T---GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAF 245
GL ++P+ IT+STVG+V I + + + LAVSLH R ++PA R +
Sbjct: 182 VDPKGL--ALAPRFITLSTVGVVPGILRLADEARPVQLAVSLHGATDAERAALVPAGRRW 239
Query: 246 PLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIG 305
PL +LM+A + Y +++IF E+ ++ G ND +HAH LG+LL VN+IP NP
Sbjct: 240 PLNELMDACRYYVAKRKRRIFFEWTLISGRNDTAEHAHHLGQLLHGMDAHVNVIPLNPTV 299
Query: 306 SVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 350
S D V +FQ +L SY + +TVR++ G DI CGQL
Sbjct: 300 GYDGG-PSVPDAVRAFQDVLT-SYGVPSTVRQRRGIDIDAGCGQL 342
>gi|251770958|gb|EES51543.1| radical SAM family protein [Leptospirillum ferrodiazotrophum]
Length = 357
Score = 214 bits (546), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 131/349 (37%), Positives = 197/349 (56%), Gaps = 37/349 (10%)
Query: 18 FEKAGIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHSVVDSSD- 76
EK G + + +V + + + ++P LL S L+ L +V+ ++
Sbjct: 15 LEKRGHPAYRGRQVAHWVYQRLTTDPRKMSNIPPGVRDLLSSGT--LSLDLPTVLSTAQS 72
Query: 77 -DVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCA 135
D T K+ ++LQ+G +E+V++ PR G + TLC+S+Q GC +GC FC
Sbjct: 73 LDGTVKMALRLQDGPVIESVLI------------PRKG--QWTLCLSTQAGCGIGCRFCR 118
Query: 136 TGTMGFKSNLSSGEIVEQLVHASRL--------SNIRNVVFMGMGEPLNNYAALVEAVRI 187
T +MG NLS+ EI+ Q + A+R S+I ++VFMGMGEPL N AL+ A+R
Sbjct: 119 TASMGLTRNLSTAEILSQWLLAARFVETLPPGESHIDHIVFMGMGEPLANLEALIPAIRS 178
Query: 188 MT-----GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAA 242
+T GL SP+RITVST G+V I+ G+ LA+SL AP +R +IMP
Sbjct: 179 LTHPDGAGL----SPRRITVSTSGLVPRIDTLGEANTGVRLAISLCAPDDALRREIMPVG 234
Query: 243 RAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFN 302
R + +E+++ A + + ++ +I EY++L GVND A QLG+LL F+ VNLIPFN
Sbjct: 235 RIYSIEEILAACRRFPLRNRDRITFEYVLLAGVNDSPLQARQLGRLLAPFRSKVNLIPFN 294
Query: 303 PIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLV 351
P S + +D V++FQ++L G ++I TVRK MG D+ ACGQL
Sbjct: 295 PFPG-SPYHRPTDSSVAAFQEVLAG-FHITATVRKSMGPDVLAACGQLA 341
>gi|262038981|ref|ZP_06012317.1| radical SAM enzyme, Cfr family [Leptotrichia goodfellowii F0264]
gi|261747005|gb|EEY34508.1| radical SAM enzyme, Cfr family [Leptotrichia goodfellowii F0264]
Length = 357
Score = 214 bits (545), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 120/341 (35%), Positives = 189/341 (55%), Gaps = 26/341 (7%)
Query: 18 FEKAGIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKFK--PLTSTLHSVVDSS 75
F G+K+ ++ ++ ++D+F ++ +L+ KF L H + S
Sbjct: 24 FADTGLKKFNANQVYDWLHNKLVFDFDKFTNISKHDREILKKKFALPKLVHRSHQI--SE 81
Query: 76 DDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCA 135
D T K L +L++ +E+V++ + + R TLC+SSQ+GC +GC+FCA
Sbjct: 82 DRDTEKFLFELKDRRLIESVLISHKN--------------RHTLCVSSQIGCLIGCDFCA 127
Query: 136 TGTMGFKSNLSSGEIVEQLVH-----ASRLSNIRNVVFMGMGEPLNNYAALVEAVRIMTG 190
T TM ++ NL + EI+ Q H + + NVVFMGMGEP NY ++E++ I+
Sbjct: 128 TATMKYERNLDASEILMQFYHIQNYLKEKNEKLGNVVFMGMGEPFLNYDNVIESINILNS 187
Query: 191 LPFQVSPKR-ITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEK 249
Q KR T+ST GIV INKF D +NLA+SLH+ D+R ++MP + + +++
Sbjct: 188 DKGQNFSKRNFTISTSGIVPVINKFTEDENQINLAISLHSVKDDIRSELMPINKTYKVKE 247
Query: 250 LMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQ 309
L AL YQK ++ +I EYI++D +N E + A +L L +F +VNLIP+NP+
Sbjct: 248 LKEALINYQKKTKNRITFEYILIDDLNCETKDAFELMNFLHSFSCLVNLIPYNPVAG-KP 306
Query: 310 FRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 350
+ T S K F +L+ N+ T+R+ GQDI+ ACGQL
Sbjct: 307 YSTPSKKKQREFYTLLKDK-NVNVTLRETKGQDIAAACGQL 346
>gi|94987122|ref|YP_595055.1| ribosomal RNA large subunit methyltransferase N [Lawsonia
intracellularis PHE/MN1-00]
gi|442555960|ref|YP_007365785.1| ribosomal RNA large subunit methyltransferase N [Lawsonia
intracellularis N343]
gi|123082152|sp|Q1MQJ3.1|RLMN_LAWIP RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|94731371|emb|CAJ54734.1| predicted Fe-S-cluster redox enzyme [Lawsonia intracellularis
PHE/MN1-00]
gi|441493407|gb|AGC50101.1| ribosomal RNA large subunit methyltransferase N [Lawsonia
intracellularis N343]
Length = 358
Score = 214 bits (545), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 133/332 (40%), Positives = 189/332 (56%), Gaps = 28/332 (8%)
Query: 31 IWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHSVVDSSDDVTTKLLVKLQNGG 90
IW++V + + + +LP + L + K + ++ SSD T K L++L +G
Sbjct: 30 IWQWVWQKQITDIESMTNLPQKIRASLTALIKINLPEIVTIQQSSDG-TKKFLLRLSDGA 88
Query: 91 FVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEI 150
+E V++ S+ K G R T C+SSQVGC MGC FC+T TMGF NL++GEI
Sbjct: 89 LIETVLI---PSIDK------AGNIRITQCLSSQVGCSMGCTFCSTATMGFIRNLTAGEI 139
Query: 151 VEQLVHASRLSN--------IRNVVFMGMGEPLNNYAALVEAVRIM---TGLPFQVSPKR 199
V Q++ A N IRN+VFMGMGEPL N L A+ I+ GL F S +R
Sbjct: 140 VSQVLLAKLHLNDNKPDKPIIRNIVFMGMGEPLLNLTELTRALHILHSEKGLNF--SARR 197
Query: 200 ITVSTVGIVHAINKFHSDLPGLN-LAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQ 258
ITVST GI I + GL LA+SLHA Q++R IMP A + L++L++ LK Y
Sbjct: 198 ITVSTCGIKKGIQALSEN--GLAFLALSLHASNQELRSTIMPKAAKWDLKELIDTLKNYS 255
Query: 259 KNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKV 318
++KI EY++L G+ND +HA +L KL+ + +NLIP+NP + +++ +
Sbjct: 256 LKKREKITFEYLLLGGINDSPEHAKELAKLITDIKGKLNLIPYNP-AQGQPYLKPTEENI 314
Query: 319 SSFQKILRGSYNIRTTVRKQMGQDISGACGQL 350
FQK+L S I T +RK GQDI+ ACGQL
Sbjct: 315 LKFQKVL-WSKGIVTILRKSKGQDINAACGQL 345
>gi|406875143|gb|EKD24975.1| hypothetical protein ACD_80C00142G0017 [uncultured bacterium (gcode
4)]
Length = 377
Score = 214 bits (545), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 135/361 (37%), Positives = 198/361 (54%), Gaps = 24/361 (6%)
Query: 7 SVFDGGIIRAEFEKAGIKQHF-IPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLT 65
S+ DGG ++ EF K Q F + I++ + +N N + E +L L F +T
Sbjct: 5 SILDGGKLQ-EFTKENKLQPFRVKQIYQEIFKNQNINFSEMTTLSKDLREDLEKDFSVVT 63
Query: 66 STLHSVVDSSDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQV 125
+ +++ D TTK+ + +G +EAVI+ Y K+N R TLCISSQV
Sbjct: 64 LKVDKIIE--DTSTTKIWFETHDGYMIEAVII-YHRQDEKHNKNNEEKLNRITLCISSQV 120
Query: 126 GCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASR-------------LSNIRNVVFMGMG 172
GC M C FC TG +GFK NL+ E++ Q++ A+ L +RNVVFMGMG
Sbjct: 121 GCPMKCLFCVTGKLGFKRNLTRDEMISQILFANNYIKKKFGKQDDGNLYCVRNVVFMGMG 180
Query: 173 EPLNNYAALVEAVRIMTGLP--FQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAP 230
EPL NY + +A+ IM F +S + IT+ST GI+ I K D + LA+SLHAP
Sbjct: 181 EPLLNYDNVKKAIEIMLRQEAGFSLSRRHITISTCGIIPGIRKLIKDEIPVKLAISLHAP 240
Query: 231 VQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLE 290
Q +R ++MP +A+PL L A+ +Y K + ++F EYIM+ + D Q A +L ++L
Sbjct: 241 NQALRDKLMPLVKAYPLIDLTKAISDYVKATDNRVFYEYIMIKNMTDTPQLAKELVEMLR 300
Query: 291 TFQVVVNLIPFNPIGSVSQFRTSSDDK-VSSFQKILRGSYNIRTTVRKQMGQDISGACGQ 349
VNLIP+N +++ T SD K +++F+KIL + TVR MG+ ACGQ
Sbjct: 301 RKLAHVNLIPYNTNPAIN--LTESDAKTINAFKKILEEG-GLTVTVRDSMGRKTKWACGQ 357
Query: 350 L 350
L
Sbjct: 358 L 358
>gi|330824021|ref|YP_004387324.1| ribosomal RNA large subunit methyltransferase N [Alicycliphilus
denitrificans K601]
gi|329309393|gb|AEB83808.1| Ribosomal RNA large subunit methyltransferase N [Alicycliphilus
denitrificans K601]
Length = 374
Score = 214 bits (545), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 139/359 (38%), Positives = 196/359 (54%), Gaps = 41/359 (11%)
Query: 19 EKAGIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLT--STLHSVVD-SS 75
E+ G K+ +++++ + ++D+ L + LR K K S L ++ + +S
Sbjct: 18 ERLGEKRFRATQLFRWIHQRGASDFDQMSDLAKS----LREKLKGCAHVSGLQAISEHAS 73
Query: 76 DDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCA 135
D T K L + G VE V + P R TLCISSQ GC +GC FC+
Sbjct: 74 ADGTVKWLFDVGGGNAVETVFI--------------PEDDRGTLCISSQAGCAVGCRFCS 119
Query: 136 TGTMGFKSNLSSGEIVEQLVHASRLSN---------IRNVVFMGMGEPLNNYAALVEAVR 186
TG GF NL++GEIV QL HA + I NVV MGMGEPL NY+ALV A+R
Sbjct: 120 TGHQGFSRNLTTGEIVAQLWHAEHVLRQRRGDGERVISNVVMMGMGEPLQNYSALVPALR 179
Query: 187 IM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAF 245
IM + +S +R+TVST G+V +++ D P + LAVSLHAP ++R ++P R +
Sbjct: 180 IMLDDHGYGLSRRRVTVSTSGVVPMMDRLGRDCP-VALAVSLHAPNDELRDNLVPLNRKY 238
Query: 246 PLEKLMNALKEYQKNSQQK-IFIEYIMLDGVNDEEQHAHQLGKLLET------FQVVVNL 298
PL++L+ A + Y +++ + I EY MLDGVND+ +HA +L L+ NL
Sbjct: 239 PLQELLAACRRYLEHAPRDFITFEYCMLDGVNDQPEHARELIALVSRKAADGGVSCKFNL 298
Query: 299 IPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDK 357
IPFNP S R S VS+F K+L + I TTVRK G DI ACGQL ++ D+
Sbjct: 299 IPFNPF-PASGLRRSPAVAVSAFAKLLSDA-GIVTTVRKTRGDDIDAACGQLAGDVKDR 355
>gi|429741487|ref|ZP_19275145.1| 23S rRNA methyltransferase [Porphyromonas catoniae F0037]
gi|429158593|gb|EKY01132.1| 23S rRNA methyltransferase [Porphyromonas catoniae F0037]
Length = 352
Score = 214 bits (545), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 124/309 (40%), Positives = 180/309 (58%), Gaps = 21/309 (6%)
Query: 44 DEFPSLPSAAYSLLRSKFKPLTSTLHSVVDSSDDVTTKLLVKLQNGGFVEAVIMRYDSSL 103
DE ++ + LL + ++ + +L + S D T K L ++++GG VEAV +
Sbjct: 48 DEMTNISKSNRELLMAHYE-VGRSLPVKSELSKDGTRKYLFRVRSGGLVEAVYI------ 100
Query: 104 GKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSNI 163
P R+TLCISSQVGCKM C FC TG GFK NLSSGEI+ Q++ +++
Sbjct: 101 --------PEKDRATLCISSQVGCKMDCLFCMTGKQGFKGNLSSGEILNQVLSVEESASL 152
Query: 164 RNVVFMGMGEPLNNYAALVEAVRIMTGLPFQV--SPKRITVSTVGIVHAINKFHSDLPGL 221
N+V+MGMGEPL+N A ++ ++ +MT P+ + SPKRIT+STVG+ + +F S+
Sbjct: 153 TNIVYMGMGEPLDNAAHVLSSISVMTA-PWGLGWSPKRITLSTVGVRKGLERFLSETT-C 210
Query: 222 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQH 281
+LAVSLH P + R +MPA PLE+ + ++E Q+++ EYI+ DGVND +H
Sbjct: 211 HLAVSLHNPFHEGRLALMPAEGGMPLEETLRMIREADFTGQRRVSFEYIVFDGVNDSREH 270
Query: 282 AHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQ 341
A +L +LL +NLIPF+ I V R S + F+ L S TT+R G+
Sbjct: 271 AEELARLLRGIPCRINLIPFHQIPDVP-LRPLSAQGMELFKSYLE-SRGYVTTIRTSRGE 328
Query: 342 DISGACGQL 350
DIS ACG L
Sbjct: 329 DISAACGML 337
>gi|337286227|ref|YP_004625700.1| radical SAM enzyme, Cfr family [Thermodesulfatator indicus DSM
15286]
gi|335359055|gb|AEH44736.1| radical SAM enzyme, Cfr family [Thermodesulfatator indicus DSM
15286]
Length = 349
Score = 214 bits (545), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 129/351 (36%), Positives = 191/351 (54%), Gaps = 28/351 (7%)
Query: 14 IRAEFEKAGIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHSVVD 73
+ A F++ G++ + ++K++ + + + LP A L +F ++
Sbjct: 15 LEALFKERGLQAYRGRQVFKWLAQPGIYSFAQMTDLPKALREELSKEFCLFLPEIYKEEV 74
Query: 74 SSDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNF 133
SSD T KL ++L++ +E VI+ P TLC+SSQVGC MGC F
Sbjct: 75 SSDG-TRKLALRLKDDELIECVII--------------PEEDHYTLCVSSQVGCAMGCAF 119
Query: 134 CATGTMGFKSNLSSGEIVEQLVHASRL---------SNIRNVVFMGMGEPLNNYAALVEA 184
C T MGF+ NLS EI Q++ A + +RN+VFMGMGEPL NY ++ A
Sbjct: 120 CLTAKMGFRRNLSPHEITAQVLRAKEVLIREGLIKEKPLRNIVFMGMGEPLANYENILRA 179
Query: 185 VRIMTGLP-FQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAAR 243
++I+ F S +R+TVSTVG++ + K D+ LA+SLHA +D R Q+MP +
Sbjct: 180 LKILLDEKGFNFSRRRVTVSTVGLIPQMEKLGKDITA-KLAISLHAADEDKRTQLMPINK 238
Query: 244 AFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNP 303
+PL++L+ A + Y +I EY+ML GVND AH+L KLL+ +NLIPFN
Sbjct: 239 RYPLKELIPACRRYPLPKGWRITFEYLMLKGVNDSSHDAHKLAKLLKGVPAKINLIPFNE 298
Query: 304 IGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNL 354
++ F+ S ++ + FQ IL SY T+RK G+DIS ACGQL L
Sbjct: 299 HPALP-FKCSDEETIFRFQGILL-SYGYVATIRKSKGRDISAACGQLATRL 347
>gi|408356068|ref|YP_006844599.1| ribosomal RNA large subunit methyltransferase N [Amphibacillus
xylanus NBRC 15112]
gi|407726839|dbj|BAM46837.1| ribosomal RNA large subunit methyltransferase N [Amphibacillus
xylanus NBRC 15112]
Length = 353
Score = 214 bits (544), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 128/363 (35%), Positives = 197/363 (54%), Gaps = 40/363 (11%)
Query: 6 RSVFD--GGIIRAEFEKAGIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKP 63
+S++D + A F + G ++ +W ++ +D+ +L LL S F
Sbjct: 5 KSIYDLTQAQLTAWFIEQGQQKFRAKQVWDWLYVKRVDSFDQMTNLNKQTRELLNSHF-- 62
Query: 64 LTSTLHSVVDS----SDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTL 119
TLH + + S D T KLL KL +G +E V+MR+ L ++
Sbjct: 63 ---TLHKLTEEIRQVSKDGTMKLLFKLTDGNLIETVLMRFPYGL--------------SV 105
Query: 120 CISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRL-------SNIRNVVFMGMG 172
C+++QVGC +GC FCA+G + +L+SGEIVEQ+V +L + ++V MG+G
Sbjct: 106 CVTTQVGCNIGCTFCASGLLKKNRDLTSGEIVEQIVRIQKLLDEQGKGEKVSHIVVMGIG 165
Query: 173 EPLNNYAALVEAVRIMT---GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 229
EP +NY + +R + GL + + ITVST G+ H I F + +NLAVSLHA
Sbjct: 166 EPFDNYDNTMNFLRTVNDPDGLA--IGARHITVSTSGLAHKIRAFADEQLQVNLAVSLHA 223
Query: 230 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLL 289
P ++R IM RAFP+EKLM+A+ Y + + +++ EYI+L GVND+++HA QL LL
Sbjct: 224 PNNELRTSIMKINRAFPIEKLMDAIDYYLEKTNRRVTFEYILLKGVNDQKEHALQLVNLL 283
Query: 290 ETFQVV--VNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGAC 347
+ + + VNLIP+NP+ +Q+ S + F ++L I VR + G DI AC
Sbjct: 284 KDKRHLSYVNLIPYNPVEEHNQYERSEKQTIVDFYEVLLKQ-GINCGVRVEQGSDIDAAC 342
Query: 348 GQL 350
GQL
Sbjct: 343 GQL 345
>gi|227547301|ref|ZP_03977350.1| possible Fe-S-cluster redox enzyme [Bifidobacterium longum subsp.
longum ATCC 55813]
gi|227212260|gb|EEI80156.1| possible Fe-S-cluster redox enzyme [Bifidobacterium longum subsp.
infantis ATCC 55813]
Length = 389
Score = 214 bits (544), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 127/326 (38%), Positives = 187/326 (57%), Gaps = 36/326 (11%)
Query: 45 EFPSLPSAAYSLLRSKFKP--LTSTLHSVVDSSDDVTTKLLVKLQNGGFVEAVIMRYDSS 102
EF P+A S + F P +T V D + T K L KL +G +E+V+MRY +
Sbjct: 79 EFTDFPAAKRSEAAAAFFPQLITEVTRQVAD--EGTTIKTLWKLFDGSLIESVLMRYPT- 135
Query: 103 LGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRL-- 160
R+TLCISSQVGC MGC FCATG +G N+S+GEI+EQ+ A+++
Sbjct: 136 -------------RTTLCISSQVGCGMGCPFCATGKLGLTRNMSTGEIIEQVRVAAKMMR 182
Query: 161 --------SNIRNVVFMGMGEPLNNYAALVEAVRIMTGLP---FQVSPKRITVSTVGIVH 209
+ N+VFMGMGEP+ NY +++ AVR ++ +P F +S + ITVSTVG+V
Sbjct: 183 DGEVAGGEGRLSNIVFMGMGEPMGNYNSVLSAVRQISAMPPEGFGISARNITVSTVGVVP 242
Query: 210 AINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEY 269
I K ++ + LAVSLHAP ++R +++P + F +++++A +Y S++++ IEY
Sbjct: 243 GIKKLTAEGIPVRLAVSLHAPSDELRDELVPMNKRFNTKQVLDAAHDYWLASKRRVSIEY 302
Query: 270 IMLDGVNDEEQHAHQLGKLLETF---QVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILR 326
++ G+ND+ +HA L K L + VN IP NPI S++ S + F +IL
Sbjct: 303 ALMRGINDQAEHAQLLAKRLNHYGDNWAHVNPIPLNPIEG-SKWTASKPEDEQRFLEILH 361
Query: 327 GSYNIRTTVRKQMGQDISGACGQLVV 352
S I T+R GQDI GACGQL
Sbjct: 362 RS-GITATLRDTRGQDIDGACGQLAA 386
>gi|344338112|ref|ZP_08769045.1| Ribosomal RNA large subunit methyltransferase N [Thiocapsa marina
5811]
gi|343802166|gb|EGV20107.1| Ribosomal RNA large subunit methyltransferase N [Thiocapsa marina
5811]
Length = 376
Score = 214 bits (544), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 127/332 (38%), Positives = 194/332 (58%), Gaps = 24/332 (7%)
Query: 31 IWKYVIENPNCEWDEFPSLPSAAYSLLRSKFK-PLTSTLHSVVDSSDDVTTKLLVKLQNG 89
++K++ ++ ++D L A LR + L +H S D T K +++L++G
Sbjct: 35 LFKWIHKHGVVDYDAMTDLSRALRDALRESVEIRLPRIIHD--QPSADGTVKWIMELEDG 92
Query: 90 GFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGE 149
+E V + P G R+T+C+SSQVGC + C+FCAT T GF NL+ GE
Sbjct: 93 QRIETVFI--------------PEGRRTTICVSSQVGCALNCSFCATATQGFNRNLTVGE 138
Query: 150 IVEQLVHASRLSNI--RNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVG 206
I Q+ HA+R + NVV MGMGEPL N+ A+V+A+ IM + ++ R+T+ST G
Sbjct: 139 IAGQIWHATRQTGAAPSNVVMMGMGEPLANFDAVVKAMDIMQDDFAYMIAKTRLTLSTSG 198
Query: 207 IVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEY-QKNSQQKI 265
IV I + ++ ++LAVSLHAP +R +++P R +PL +L+ A K Y + +++I
Sbjct: 199 IVPNIYRLR-EVSDVSLAVSLHAPNDALRDELVPINRKYPLAELLPACKAYVGADKRRRI 257
Query: 266 FIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKIL 325
EY+MLDG+ND HA Q+ +LLE VNLIPFNP +Q+ TS +++ +F+ L
Sbjct: 258 TWEYVMLDGINDSLAHAKQMIRLLEGIPSKVNLIPFNPFPG-NQYGTSPPERIEAFRARL 316
Query: 326 RGSYNIRTTVRKQMGQDISGACGQLVVNLPDK 357
G+ I T RK G +I+ ACGQLV + D+
Sbjct: 317 AGA-GIFTMTRKTRGDEIAAACGQLVGRVEDR 347
>gi|344343058|ref|ZP_08773928.1| Ribosomal RNA large subunit methyltransferase N [Marichromatium
purpuratum 984]
gi|343805610|gb|EGV23506.1| Ribosomal RNA large subunit methyltransferase N [Marichromatium
purpuratum 984]
Length = 364
Score = 214 bits (544), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 130/332 (39%), Positives = 199/332 (59%), Gaps = 24/332 (7%)
Query: 31 IWKYVIENPNCEWDEFPSLPSAAYSLLRSKFK-PLTSTLHSVVDSSDDVTTKLLVKLQNG 89
++K++ ++ ++D LP A LR + + L +H+ S D T K +++L +G
Sbjct: 35 LFKWIHKHGVVDFDAMTDLPLALRQQLRERTEIRLPRIVHA--HPSADGTIKWVMELTDG 92
Query: 90 GFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGE 149
+E V + P G RST+C+SSQVGC + C FCAT GF NL+ E
Sbjct: 93 QHIETVFI--------------PEGRRSTICVSSQVGCALDCRFCATAKQGFNRNLAVSE 138
Query: 150 IVEQLVHASR--LSNIRNVVFMGMGEPLNNYAALVEAVRIMT-GLPFQVSPKRITVSTVG 206
I+ Q+ HA+R ++ NVV MGMGEPL N+ A+V+A+ +M L + ++ +R+TVSTVG
Sbjct: 139 IIAQVWHATRHLQASPTNVVMMGMGEPLANFDAVVKAMAVMQDDLAYMLAKQRVTVSTVG 198
Query: 207 IVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEY-QKNSQQKI 265
IV AI + ++ ++LAVSLHAP +R +++P R +PL +L+ A + Y + ++K+
Sbjct: 199 IVPAIERLR-EVSDVSLAVSLHAPNDALRNELVPINRKYPLAELIPACRRYVAADKRRKV 257
Query: 266 FIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKIL 325
EYIM+ G+ND HA QL +LLE +NLIPFNP V + TS ++V +F++ L
Sbjct: 258 TWEYIMIAGLNDSIAHAKQLIRLLEGTPSKINLIPFNPFPGVD-YATSPPEQVEAFRQRL 316
Query: 326 RGSYNIRTTVRKQMGQDISGACGQLVVNLPDK 357
S I TT RK G++I+ ACGQLV + D+
Sbjct: 317 IRSGLIATT-RKTRGEEIAAACGQLVGRVQDR 347
>gi|327398526|ref|YP_004339395.1| ribosomal RNA large subunit methyltransferase N [Hippea maritima
DSM 10411]
gi|327181155|gb|AEA33336.1| Ribosomal RNA large subunit methyltransferase N [Hippea maritima
DSM 10411]
Length = 342
Score = 214 bits (544), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 119/339 (35%), Positives = 196/339 (57%), Gaps = 28/339 (8%)
Query: 18 FEKAGIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHSVVDSSDD 77
+EK +Q F ++K IE +D+ L L+ +F + ++DD
Sbjct: 21 YEKYRAEQIF-SFLYKQRIEG----FDDITVLKKEVRRQLKEQF-FIYKIEEKTSYAADD 74
Query: 78 VTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATG 137
T K L KL +G +E+V++ +++ R T+C+S+Q GC+MGC FCATG
Sbjct: 75 GTKKYLFKLNDGMLIESVLIPMEAN-------------RFTICVSTQAGCRMGCKFCATG 121
Query: 138 TMGFKSNLSSGEIVEQLVHASRLSNIR--NVVFMGMGEPLNNYAALVEAVRIMT---GLP 192
MGFK NLS+ EIV Q+V+ +++N++ NVV+MGMGEPL+NY V++++I++ GL
Sbjct: 122 RMGFKRNLSTSEIVSQVVYILKVNNLKTANVVYMGMGEPLDNYENTVKSIKILSDDRGL- 180
Query: 193 FQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMN 252
+S +RIT+ST GI +NK DLP +N+A+SLH+ + R IMP +P+++++N
Sbjct: 181 -SISKRRITLSTAGITPGVNKLKKDLPNINMALSLHSIISKKRSMIMPINDTYPIDEVLN 239
Query: 253 ALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSV-SQFR 311
LK++ +++I EY+M+ G+ND + L K++ F+ +N+IP N + ++F
Sbjct: 240 ELKDFPMPRRKRITFEYVMIKGINDTKDDLKALLKVMSNFKCKLNIIPLNKHDLLGTKFE 299
Query: 312 TSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 350
+ D++ F LR + T+RK G I+ ACG L
Sbjct: 300 PTPMDRIEEFADYLRNK-GMFVTIRKSKGSSINAACGML 337
>gi|119025804|ref|YP_909649.1| ribosomal RNA large subunit methyltransferase N [Bifidobacterium
adolescentis ATCC 15703]
gi|154487364|ref|ZP_02028771.1| hypothetical protein BIFADO_01214 [Bifidobacterium adolescentis
L2-32]
gi|205829670|sp|A1A1I4.1|RLMN_BIFAA RecName: Full=Probable dual-specificity RNA methyltransferase RlmN;
AltName: Full=23S rRNA
(adenine(2503)-C(2))-methyltransferase; AltName:
Full=23S rRNA m2A2503 methyltransferase; AltName:
Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=tRNA (adenine(37)-C(2))-methyltransferase;
AltName: Full=tRNA m2A37 methyltransferase
gi|118765388|dbj|BAF39567.1| hypothetical protein BAD_0786 [Bifidobacterium adolescentis ATCC
15703]
gi|154083882|gb|EDN82927.1| 23S rRNA m2A2503 methyltransferase [Bifidobacterium adolescentis
L2-32]
Length = 386
Score = 214 bits (544), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 127/331 (38%), Positives = 185/331 (55%), Gaps = 36/331 (10%)
Query: 44 DEFPSLPSAAYSLLRSKFKPLTSTLHSVVDSSDD--VTTKLLVKLQNGGFVEAVIMRYDS 101
+EF P+A S F P +H V D T K L +L +G +E+V+MRY +
Sbjct: 74 EEFSDFPAARRSDAAEAFFP--ELIHEVTRQVADGGTTIKTLWRLFDGSLIESVLMRYPT 131
Query: 102 SLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRL- 160
R+TLCISSQVGC MGC FCATG +G N+S+GEIVEQ+ A++
Sbjct: 132 --------------RTTLCISSQVGCGMGCPFCATGQLGLTRNMSAGEIVEQVRVAAKAM 177
Query: 161 ---------SNIRNVVFMGMGEPLNNYAALVEAVRIMTGLP---FQVSPKRITVSTVGIV 208
+ N+VFMGMGEP+ NY +++ AVR ++ +P F +S + ITVSTVG+V
Sbjct: 178 RDGEVAGGSGRLSNIVFMGMGEPMGNYKSVLSAVRQISSMPPEGFGISARNITVSTVGVV 237
Query: 209 HAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIE 268
I K + + LAVSLHAP ++R +++P + F +++++A +Y S++++ IE
Sbjct: 238 PGIRKLAEEGIPVRLAVSLHAPSDELRDELVPMNKRFNTKQVLDAAHDYYLASKRRVSIE 297
Query: 269 YIMLDGVNDEEQHAHQLGKLLETF---QVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKIL 325
Y ++ G+ND+ +HA L K L + VN IP NPI S++ S + F +IL
Sbjct: 298 YALMRGINDQAEHAKLLAKRLNHYGDDWAHVNPIPLNPI-EGSKWTASKPEDERRFLEIL 356
Query: 326 RGSYNIRTTVRKQMGQDISGACGQLVVNLPD 356
+ I T+R GQDI GACGQL D
Sbjct: 357 HNA-GITATLRDTRGQDIDGACGQLAAKERD 386
>gi|329770490|ref|ZP_08261868.1| ribosomal RNA large subunit methyltransferase N [Gemella sanguinis
M325]
gi|328836239|gb|EGF85908.1| ribosomal RNA large subunit methyltransferase N [Gemella sanguinis
M325]
Length = 377
Score = 214 bits (544), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 118/336 (35%), Positives = 199/336 (59%), Gaps = 25/336 (7%)
Query: 22 GIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHSVV-DSSDDVTT 80
G K+ I+ ++ + ++ E ++P + L+ +F+ +TL++++ S D T
Sbjct: 39 GEKKFRAKQIYDWLYKKRVTDFSEMKNIPKSLQEKLKDEFE--ITTLNTIIKQESADGTM 96
Query: 81 KLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMG 140
K L +LQ+ +E+V+MR KY ++LC+++QVGC++GC FCA+ G
Sbjct: 97 KFLFELQDKFTIESVLMR-----NKYG---------NSLCVTTQVGCRIGCTFCASTLGG 142
Query: 141 FKSNLSSGEIVEQLVHA-----SRLSNIRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQ 194
K NL +GEIV Q++ + I ++V MG+GEP NY +++ ++I+ + F
Sbjct: 143 LKRNLEAGEIVSQVLKVQQELDKKGERISSIVIMGIGEPFENYDEMMDFIKIVNSDESFN 202
Query: 195 VSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNAL 254
+ + ITVST GIV I F ++ +N AVSLHAP ++R +IMP RA+ ++KLM AL
Sbjct: 203 IGARHITVSTSGIVPRIYDFANENIQINFAVSLHAPTNELRSKIMPVNRAYNIDKLMEAL 262
Query: 255 KEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSS 314
+ YQK + ++I EY ++ VND+++HA +L ++++ VNLIP N + + RTS
Sbjct: 263 RYYQKTTNRRITFEYGLMGKVNDQKEHAEKLSEIIKGINCHVNLIPINYVPERNYVRTSK 322
Query: 315 DDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 350
+D + +F+KIL+ + + T+R+ G DI ACGQL
Sbjct: 323 ND-IFAFEKILKKN-KVNVTIRRTQGDDIDAACGQL 356
>gi|297624942|ref|YP_003706376.1| radical SAM domain-containing protein [Truepera radiovictrix DSM
17093]
gi|297166122|gb|ADI15833.1| radical SAM enzyme, Cfr family [Truepera radiovictrix DSM 17093]
Length = 349
Score = 214 bits (544), Expect = 8e-53, Method: Compositional matrix adjust.
Identities = 130/330 (39%), Positives = 185/330 (56%), Gaps = 29/330 (8%)
Query: 32 WKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHSVVDSSDDVTTKLLVKLQNGGF 91
W Y + W+ +LP A + L ++++ L+ + S D + + L+ L +G
Sbjct: 31 WLY--QRGALSWEAMTNLPRAWRAELGARYR-LSPFVRLERFVSADASVRYLLTLPDGKQ 87
Query: 92 VEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIV 151
EAV M Y R TLC+SS VGC GC FCATG +GF NLS EI+
Sbjct: 88 TEAVYMPYRG--------------RKTLCVSSMVGCPAGCAFCATGALGFGRNLSRAEIL 133
Query: 152 EQLVHASRLSNI-----RNVVFMGMGEPLNNYAALVEAVRIMT---GLPFQVSPKRITVS 203
QL+ ++ I RNVV MGMGE L NY + A+R M GL +SP+RIT+S
Sbjct: 134 GQLLVVAQAEGIAPREIRNVVLMGMGEALLNYDNALGAIRTMIHPEGL--DMSPRRITLS 191
Query: 204 TVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQ 263
TVG+ I + ++ L LAVSLHAP + R +I+P A A +E+++ AL ++Q +
Sbjct: 192 TVGLPGRIRRLAAERLPLVLAVSLHAPDEKTRREIIPTAHAHAIEEIIAALHDWQAAGGR 251
Query: 264 KIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQK 323
++ IEY ML GVND A L LL V VNLIPFNP G+ S FR+SS +++ F++
Sbjct: 252 RVTIEYTMLAGVNDALWQAEALVALLRGLVVHVNLIPFNPWGA-SPFRSSSRAQIARFER 310
Query: 324 ILRGSYNIRTTVRKQMGQDISGACGQLVVN 353
+L G+ + +VR G+D GACGQL ++
Sbjct: 311 VLTGA-GLSVSVRFSRGRDTGGACGQLALS 339
>gi|225156281|ref|ZP_03724759.1| radical SAM enzyme, Cfr family [Diplosphaera colitermitum TAV2]
gi|224803013|gb|EEG21258.1| radical SAM enzyme, Cfr family [Diplosphaera colitermitum TAV2]
Length = 367
Score = 213 bits (543), Expect = 9e-53, Method: Compositional matrix adjust.
Identities = 121/347 (34%), Positives = 176/347 (50%), Gaps = 40/347 (11%)
Query: 31 IWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHSVVDSSDDVTTKLLVKLQNGG 90
+W Y+ + LP+ L ++ + SSD T K L+ L +G
Sbjct: 33 LWAYLYLEDTDDIRAMSDLPARMRDRLLAETSAARLPVACETHSSDGFTRKYLLALSDGR 92
Query: 91 FVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEI 150
+E V+MRY R T C+SSQVGC MGC FCATG MGF +L++GEI
Sbjct: 93 EIETVLMRYKG--------------RVTACVSSQVGCAMGCVFCATGQMGFTRHLTAGEI 138
Query: 151 VEQLVHASRL-----------------------SNIRNVVFMGMGEPLNNYAALVEAVRI 187
V Q +H R+ +RN+V MGMGEPL+NY A++ A+ I
Sbjct: 139 VAQALHVDRVLRRTADDAPALAEPGNASPHHRHERLRNIVLMGMGEPLHNYDAVMRAIDI 198
Query: 188 MT-GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFP 246
+ G + ++IT+STVG+V I + + ++LAVSLH Q R ++PAARA+P
Sbjct: 199 LRDGNGLALGARKITLSTVGVVPGIIRLADEHNPVHLAVSLHGATQAERAALVPAARAWP 258
Query: 247 LEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGS 306
L+ LM A + Y + Q++IF E+ +++G ND A +G+LL Q VNLIP NP
Sbjct: 259 LDALMEACRYYVQKQQRRIFFEWTLIEGKNDGPDQARAVGRLLRGMQAQVNLIPLNPTSG 318
Query: 307 VSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVN 353
+ D FQ +L + + +T+R++ G DI CGQL
Sbjct: 319 YAG-EPGRADAAKRFQAVL-AEHGLPSTIRQRRGIDIGAGCGQLATE 363
>gi|417942138|ref|ZP_12585415.1| Ribosomal RNA large subunit methyltransferase N [Bifidobacterium
breve CECT 7263]
gi|376167523|gb|EHS86359.1| Ribosomal RNA large subunit methyltransferase N [Bifidobacterium
breve CECT 7263]
Length = 390
Score = 213 bits (543), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 126/326 (38%), Positives = 186/326 (57%), Gaps = 35/326 (10%)
Query: 45 EFPSLPSAAYSLLRSKFKP--LTSTLHSVVDSSDDVTTKLLVKLQNGGFVEAVIMRYDSS 102
EF P+A + F P +T V D S + T L KL +G +E+V+MRY +
Sbjct: 79 EFTDFPAAKRDEAAAAFFPQLITEVTRQVADESTTIKT-LWKKLFDGSLIESVLMRYPT- 136
Query: 103 LGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRL-- 160
R+TLCISSQVGC MGC FCATG +G N+S+GEIVEQ+ A+++
Sbjct: 137 -------------RATLCISSQVGCGMGCPFCATGKLGLTRNMSTGEIVEQVRVAAKMMR 183
Query: 161 --------SNIRNVVFMGMGEPLNNYAALVEAVRIMTGLP---FQVSPKRITVSTVGIVH 209
+ N+VFMGMGEP+ NY +++ AVR ++ +P F +S + ITVSTVG+V
Sbjct: 184 DGEVAGGEGRLSNIVFMGMGEPMGNYNSVLSAVRQISAMPPEGFGISARNITVSTVGVVP 243
Query: 210 AINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEY 269
I K ++ + LAVSLHAP ++R +++P + F ++++A +Y S++++ IEY
Sbjct: 244 GIKKLTAEGIPVRLAVSLHAPSDELRDELVPMNKRFNTTQVLDAAHDYWLASKRRVSIEY 303
Query: 270 IMLDGVNDEEQHAHQLGKLLETF---QVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILR 326
++ G+ND+ +HA L K L + VN IP NPI S++ S + F +IL
Sbjct: 304 ALMRGINDQAEHAQLLAKRLNHYGDDWAHVNPIPLNPIEG-SKWTASKPEDEKQFLEILH 362
Query: 327 GSYNIRTTVRKQMGQDISGACGQLVV 352
+ +I T+R GQDI GACGQL
Sbjct: 363 RA-SITATLRDTRGQDIDGACGQLAA 387
>gi|408500961|ref|YP_006864880.1| radical SAM enzyme, Cfr family [Bifidobacterium asteroides PRL2011]
gi|408465785|gb|AFU71314.1| radical SAM enzyme, Cfr family [Bifidobacterium asteroides PRL2011]
Length = 395
Score = 213 bits (543), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 127/325 (39%), Positives = 180/325 (55%), Gaps = 32/325 (9%)
Query: 44 DEFPSLPSAAYSLLRSKFKPLTSTLHSVVDSSDDVTTKLLVKLQNGGFVEAVIMRYDSSL 103
D+F P+A +F P T +V + T K L +L +G +E+V+MRY S
Sbjct: 80 DDFTDFPAANRQEAAHRFFPELITPVTVQKADQGTTIKTLWELFDGSRIESVLMRYPS-- 137
Query: 104 GKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRL--- 160
R+TLCISSQVGC MGC FCATG +G N+S+GEI+EQ+ AS++
Sbjct: 138 ------------RATLCISSQVGCGMGCPFCATGQLGLTRNMSTGEILEQVRAASQMMRS 185
Query: 161 -------SNIRNVVFMGMGEPLNNYAALVEAVRIMTGLP---FQVSPKRITVSTVGIVHA 210
+ N+VFMGMGEP+ NY A++ AVR ++ LP F +S + ITVSTVG+V
Sbjct: 186 GQVAGGPGRLSNIVFMGMGEPMGNYRAVLSAVRQISALPPKGFGISARNITVSTVGVVPG 245
Query: 211 INKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYI 270
I K + + LAVSLHAP +R +++P R F ++++A +Y S +++ IEY
Sbjct: 246 IRKLTKEGIPVRLAVSLHAPSDKLRDELVPMNRRFNTTQVLDAAHDYYLASGRRVSIEYA 305
Query: 271 MLDGVNDEEQHAHQLGKLLETF---QVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRG 327
++ G+ND+ +HA L K L + VN IP NPI S++ S + F IL
Sbjct: 306 LMRGINDQAEHARLLAKRLNHYGDDWAHVNPIPLNPIEG-SRWTASKPEDEQRFLDILHK 364
Query: 328 SYNIRTTVRKQMGQDISGACGQLVV 352
+ I T+R G DI GACGQL
Sbjct: 365 A-GITATMRDTRGSDIDGACGQLAA 388
>gi|395003902|ref|ZP_10387999.1| 23S rRNA methyltransferase [Acidovorax sp. CF316]
gi|394318186|gb|EJE54646.1| 23S rRNA methyltransferase [Acidovorax sp. CF316]
Length = 396
Score = 213 bits (543), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 146/370 (39%), Positives = 199/370 (53%), Gaps = 38/370 (10%)
Query: 9 FDGGIIRAEFEKAGIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLR--SKFKPLTS 66
FD + A EK G K+ +++++ + ++D L A LR + + L
Sbjct: 31 FDLDGLAAFCEKLGEKRFRATQLFRWIHQRGAHDFDAMSDLAKALRDKLRGCAHVQALPV 90
Query: 67 TLHSVVDSSDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVG 126
V S D T K L + G VEAV + P R TLCISSQ G
Sbjct: 91 ITEHV---SADGTVKWLFDVGGGNAVEAVFI--------------PEDDRGTLCISSQAG 133
Query: 127 CKMGCNFCATGTMGFKSNLSSGEIVEQLVHAS-----RLSN----IRNVVFMGMGEPLNN 177
C +GC FC+TG GF NL++GEIV QL A RL I NVV MGMGEPL N
Sbjct: 134 CAVGCRFCSTGHQGFSRNLTTGEIVAQLWFAEHALRKRLGKDERVISNVVMMGMGEPLQN 193
Query: 178 YAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRC 236
Y+ALV A+R+M + +S +R+TVST G+V I++ D P + LAVSLHAP +R
Sbjct: 194 YSALVPALRVMLDDHAYGLSRRRVTVSTSGVVPMIDRLAQDCP-VALAVSLHAPNDPLRD 252
Query: 237 QIMPAARAFPLEKLMNALKEYQKNSQQK-IFIEYIMLDGVNDEEQHAHQLGKLL-----E 290
++P R +P+E+L+ A Y +++ + I EY MLDGVND+ +HA QL +L+ E
Sbjct: 253 NLVPLNRKYPIEELLAACNRYLEHAPRDFITFEYCMLDGVNDQIEHARQLIELVKPARGE 312
Query: 291 TFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 350
+ NLIPFNP + R SS +V +F K+L + I TTVRK G DI ACGQL
Sbjct: 313 GVRCKFNLIPFNPFPASGLLR-SSHAQVQAFGKLLSDA-GIVTTVRKTRGDDIDAACGQL 370
Query: 351 VVNLPDKISA 360
++ D+ A
Sbjct: 371 AGDVKDRTKA 380
>gi|323453410|gb|EGB09282.1| hypothetical protein AURANDRAFT_12147, partial [Aureococcus
anophagefferens]
Length = 316
Score = 213 bits (542), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 133/320 (41%), Positives = 184/320 (57%), Gaps = 39/320 (12%)
Query: 59 SKFKPLTSTLHSVVDSSDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRST 118
+ F + L S DSSD T+KL+V L+ G VE V+MR+ G R R T
Sbjct: 9 ANFSARSVDLVSRHDSSDGSTSKLVVGLRCGKKVETVVMRH--------GTLRS--SRVT 58
Query: 119 LCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN-IRNVVFMGMGEPLNN 177
+C+SSQVGC M C+FCATGTMG + +L+ GEIVEQ++ A + +RNVVFMGMGEPLNN
Sbjct: 59 VCVSSQVGCAMRCSFCATGTMGMQGDLTRGEIVEQVLLAKGVDGRLRNVVFMGMGEPLNN 118
Query: 178 YAALVEAVR-IMTGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRC 236
Y ++ A R ++ + R+T+STVG+V I +D P NLA+SLHAP QD R
Sbjct: 119 YDEVLGACRCLLDDRWLALGGGRVTISTVGVVDRIRSLAADEPRANLALSLHAPTQDQRV 178
Query: 237 QIMPAARAFPLEK--------LMNALKEYQKNSQQK---------IFIEYIMLDGVNDEE 279
IMPAA+ + L+ + L+E ++ +K I +EYI+L GVND
Sbjct: 179 AIMPAAKRYDLDDLLDALDAYVAEKLRELERRGSRKRRNDEKQPLIMVEYILLGGVNDSV 238
Query: 280 QHAHQLGKLLETF--------QVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNI 331
A LGKL + +VNLI +NP + R SD V++FQK ++ ++ +
Sbjct: 239 ADADALGKLFSRAGAAPRFGGRAMVNLIAYNPTPDLPYDR-PSDAAVAAFQKAVQ-AHGV 296
Query: 332 RTTVRKQMGQDISGACGQLV 351
T VR MG D++GACGQL+
Sbjct: 297 LTCVRITMGSDVAGACGQLL 316
>gi|270284175|ref|ZP_05965684.2| radical SAM enzyme, Cfr family [Bifidobacterium gallicum DSM 20093]
gi|270277254|gb|EFA23108.1| radical SAM enzyme, Cfr family [Bifidobacterium gallicum DSM 20093]
Length = 369
Score = 213 bits (542), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 129/362 (35%), Positives = 200/362 (55%), Gaps = 36/362 (9%)
Query: 16 AEFEKAGIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKP--LTSTLHSVVD 73
A+ ++ G+ + + + K+ ++ + +F P+A F P +T + V D
Sbjct: 26 AKAKELGLPKFRVNQLAKHYYDHFDVNAADFTDFPAAHRGQAAQTFFPQLITEVMRQVAD 85
Query: 74 SSDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNF 133
D T K L L +G +E+V+MRY + R+TLCISSQVGC MGC F
Sbjct: 86 --DGQTIKTLWDLFDGSRIESVLMRYPN--------------RATLCISSQVGCGMGCPF 129
Query: 134 CATGTMGFKSNLSSGEIVEQLVHASRL----------SNIRNVVFMGMGEPLNNYAALVE 183
CATG +G N+S+GEI+EQ+ A+R+ + N+VFMGMGEP+ NY +++
Sbjct: 130 CATGQLGLTRNMSTGEILEQVRVAARMMREGEVAGGPGRLSNIVFMGMGEPMGNYKSVMS 189
Query: 184 AVRIMTGLP---FQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMP 240
AVR ++ +P F +S + ITVSTVG+V I K + + LAVSLHAP ++R +++P
Sbjct: 190 AVRQISAMPPDGFGISARNITVSTVGVVPGIRKLAQEGLPVRLAVSLHAPSDELRDKLVP 249
Query: 241 AARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETF---QVVVN 297
+ F +++++A +Y S +++ IEY ++ G+ND+ +HA L K L + VN
Sbjct: 250 MNKRFNTKQVLDAAHDYYLASNRRVSIEYALMRGINDQAEHARLLAKRLNHYGDNWAHVN 309
Query: 298 LIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDK 357
IP NPI S++ S + F IL + I T+R GQDI GACGQL + ++
Sbjct: 310 PIPLNPIEG-SKWTASKPEDEQQFLDILHRA-GITATMRDTRGQDIDGACGQLAAKVKNQ 367
Query: 358 IS 359
S
Sbjct: 368 QS 369
>gi|291456892|ref|ZP_06596282.1| radical SAM enzyme, Cfr family [Bifidobacterium breve DSM 20213 =
JCM 1192]
gi|384196900|ref|YP_005582644.1| 2-vinyl bacteriochlorophyllide hydratase [Bifidobacterium breve
ACS-071-V-Sch8b]
gi|291382169|gb|EFE89687.1| radical SAM enzyme, Cfr family [Bifidobacterium breve DSM 20213 =
JCM 1192]
gi|333110216|gb|AEF27232.1| 23S rRNA m2A2503 methyltransferase [Bifidobacterium breve
ACS-071-V-Sch8b]
gi|339479311|gb|ABE95779.1| Radical SAM family enzyme [Bifidobacterium breve UCC2003]
Length = 389
Score = 213 bits (542), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 126/326 (38%), Positives = 185/326 (56%), Gaps = 36/326 (11%)
Query: 45 EFPSLPSAAYSLLRSKFKP--LTSTLHSVVDSSDDVTTKLLVKLQNGGFVEAVIMRYDSS 102
EF P+A + F P +T V D + T K L KL +G +E+V+MRY +
Sbjct: 79 EFTDFPAAKRDEAAAAFFPQLITEVTRQVAD--EGTTIKTLWKLFDGSLIESVLMRYPT- 135
Query: 103 LGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRL-- 160
R+TLCISSQVGC MGC FCATG +G N+S+GEIVEQ+ A+++
Sbjct: 136 -------------RTTLCISSQVGCGMGCPFCATGKLGLTRNMSTGEIVEQVRVAAKMMR 182
Query: 161 --------SNIRNVVFMGMGEPLNNYAALVEAVRIMTGLP---FQVSPKRITVSTVGIVH 209
+ N+VFMGMGEP+ NY +++ AVR ++ +P F +S + ITVSTVG+V
Sbjct: 183 DGEVAGGEGRLSNIVFMGMGEPMGNYNSVLSAVRQISAMPPEGFGISARNITVSTVGVVP 242
Query: 210 AINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEY 269
I K ++ + LAVSLHAP ++R +++P + F ++++A +Y S++++ IEY
Sbjct: 243 GIKKLTAEGIPVRLAVSLHAPSDELRDELVPMNKRFNTTQVLDAAHDYWLASKRRVSIEY 302
Query: 270 IMLDGVNDEEQHAHQLGKLLETF---QVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILR 326
++ G+ND+ +HA L K L + VN IP NPI S++ S + F +IL
Sbjct: 303 ALMRGINDQAEHAQLLAKRLNHYGDNWAHVNPIPLNPIEG-SKWTASKPEDEKQFLEILH 361
Query: 327 GSYNIRTTVRKQMGQDISGACGQLVV 352
+ I T+R GQDI GACGQL
Sbjct: 362 RA-GITATLRDTRGQDIDGACGQLAA 386
>gi|333377200|ref|ZP_08468936.1| ribosomal RNA large subunit methyltransferase N [Dysgonomonas
mossii DSM 22836]
gi|332886413|gb|EGK06657.1| ribosomal RNA large subunit methyltransferase N [Dysgonomonas
mossii DSM 22836]
Length = 341
Score = 213 bits (542), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 126/325 (38%), Positives = 180/325 (55%), Gaps = 33/325 (10%)
Query: 44 DEFPSLPSAAYSLLRSKF-----KPLTSTLHSVVDSSDDVTTKLLVKLQNGGFVEAVIMR 98
DE +L A +LL K+ PL S D T K L K + +EAV++
Sbjct: 36 DEMTNLSVANRALLSEKYDIGRYNPLE------FQQSVDGTVKYLFKTEKEKLIEAVMI- 88
Query: 99 YDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHAS 158
P R+TLC+SSQVGCKM C FC TG GF NL++ EI+ QL
Sbjct: 89 -------------PEDDRATLCVSSQVGCKMNCLFCMTGKQGFNGNLTANEILNQLYSVR 135
Query: 159 RLSNIRNVVFMGMGEPLNNYAALVEAVRIMT---GLPFQVSPKRITVSTVGIVHAINKFH 215
++ NVVFMGMGEPL+NY L + + IMT G+ + SPKRITVST G+ + +F
Sbjct: 136 EAESLTNVVFMGMGEPLDNYEELKKTLEIMTADYGMAW--SPKRITVSTTGVTPKLKRFL 193
Query: 216 SDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGV 275
D +LA+S+H+P ++ R IMPA +AFP+ +M+ L++Y Q+++ EYIM D
Sbjct: 194 -DESNAHLAISIHSPEKEQRLSIMPAEKAFPITGVMDLLRQYDWTKQRRLSFEYIMFDNF 252
Query: 276 NDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTV 335
ND HA +L ++L + VNLI F+ I +V +TS+ +K+ +F+ L + +T+
Sbjct: 253 NDSLIHAKELTQMLRGVECRVNLIRFHAIPNVD-LKTSTKEKMEAFRDYLTKK-GVTSTI 310
Query: 336 RKQMGQDISGACGQLVVNLPDKISA 360
R G+DI ACG L D +SA
Sbjct: 311 RASRGEDIFAACGMLSTMKGDALSA 335
>gi|269926508|ref|YP_003323131.1| radical SAM enzyme, Cfr family [Thermobaculum terrenum ATCC
BAA-798]
gi|269790168|gb|ACZ42309.1| radical SAM enzyme, Cfr family [Thermobaculum terrenum ATCC
BAA-798]
Length = 371
Score = 213 bits (542), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 126/329 (38%), Positives = 189/329 (57%), Gaps = 27/329 (8%)
Query: 31 IWKYVIENPNCEWDEFPSLPSAAYSLLRSKFK-PLTSTLHSVVDSSDDVTTKLLVKLQNG 89
+W+ + + ++ SLP A +L ++F P + + + V D T K+L +L++G
Sbjct: 46 VWQAIYRQLEVDPEKMTSLPKALREVLSAEFPFPNITPVRTFVADGGD-TEKVLFQLEDG 104
Query: 90 GFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGE 149
+E+V+M Y R+T+C+SSQ GC +GC FCATG GF NLS+GE
Sbjct: 105 NAIESVLMEYMDG-------------RATVCVSSQAGCAIGCTFCATGLGGFYRNLSAGE 151
Query: 150 IVEQLVHASRL-----SNIRNVVFMGMGEPLNNYAAL---VEAVRIMTGLPFQVSPKRIT 201
IV Q+++ S+ + N+V+MGMGEPL N A+ VE + TG+ F S +RIT
Sbjct: 152 IVYQILYFSKKLRDKGKRLTNIVYMGMGEPLANLDAVWRSVENLHEPTGMNF--SARRIT 209
Query: 202 VSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNS 261
+ST G+VH I++F +NLA+SLHAP D+R IMP R +P+ +L+ + K Y + +
Sbjct: 210 ISTAGLVHQIDRFPPTDLQVNLAISLHAPNDDLRTSIMPINRRWPISELIASAKRYVERT 269
Query: 262 QQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSF 321
++I EY+++ G N ++HA L LL VNLIP N + S F S ++V++F
Sbjct: 270 HRRITFEYVLIAGCNSSKEHARDLSNLLRGLLCHVNLIPLNRVPG-SPFEPPSTEEVNTF 328
Query: 322 QKILRGSYNIRTTVRKQMGQDISGACGQL 350
+ IL S I TVR + G DI ACGQL
Sbjct: 329 RDILL-SAGIPCTVRLERGADILAACGQL 356
>gi|312132647|ref|YP_003999986.1| fe-s-cluster redox enzyme [Bifidobacterium longum subsp. longum
BBMN68]
gi|419849125|ref|ZP_14372188.1| 23S rRNA m2A2503 methyltransferase [Bifidobacterium longum subsp.
longum 35B]
gi|419852089|ref|ZP_14374986.1| 23S rRNA m2A2503 methyltransferase [Bifidobacterium longum subsp.
longum 2-2B]
gi|311773598|gb|ADQ03086.1| Hypothetical Fe-S-cluster redox enzyme [Bifidobacterium longum
subsp. longum BBMN68]
gi|386411863|gb|EIJ26573.1| 23S rRNA m2A2503 methyltransferase [Bifidobacterium longum subsp.
longum 2-2B]
gi|386412749|gb|EIJ27399.1| 23S rRNA m2A2503 methyltransferase [Bifidobacterium longum subsp.
longum 35B]
Length = 389
Score = 213 bits (541), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 126/326 (38%), Positives = 187/326 (57%), Gaps = 36/326 (11%)
Query: 45 EFPSLPSAAYSLLRSKFKP--LTSTLHSVVDSSDDVTTKLLVKLQNGGFVEAVIMRYDSS 102
EF P+A S + F P +T V D + T K L KL +G +E+V+MRY +
Sbjct: 79 EFTDFPAAKRSEAAAAFFPQLITEVTRQVAD--EGTTIKTLWKLFDGSLIESVLMRYPT- 135
Query: 103 LGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRL-- 160
R+TLCISSQVGC MGC FCATG +G N+S+GEI+EQ+ A+++
Sbjct: 136 -------------RTTLCISSQVGCGMGCPFCATGKLGLTRNMSTGEIIEQVRVAAKMMR 182
Query: 161 --------SNIRNVVFMGMGEPLNNYAALVEAVRIMTGLP---FQVSPKRITVSTVGIVH 209
+ N+VFMGMGEP+ NY +++ AVR ++ +P F +S + ITVSTVG+V
Sbjct: 183 DGEVAGGEGRLSNIVFMGMGEPMGNYNSVLSAVRQISAMPPEGFGISARNITVSTVGVVP 242
Query: 210 AINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEY 269
I K ++ + LAVSLHAP ++R +++P + F +++++A +Y S++++ IEY
Sbjct: 243 GIKKLTAEGIPVRLAVSLHAPSDELRDELVPMNKRFNTKQVLDAAHDYWLASKRRVSIEY 302
Query: 270 IMLDGVNDEEQHAHQLGKLLETF---QVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILR 326
++ G+ND+ +HA L K L + VN IP NPI S++ S + F +IL
Sbjct: 303 ALMRGINDQAEHAQLLAKRLNHYGDNWAHVNPIPLNPIEG-SKWTASKPEDEQRFLEILH 361
Query: 327 GSYNIRTTVRKQMGQDISGACGQLVV 352
+ I T+R GQDI GACGQL
Sbjct: 362 RA-GITATLRDTRGQDIDGACGQLAA 386
>gi|333985584|ref|YP_004514794.1| ribosomal RNA large subunit methyltransferase N [Methylomonas
methanica MC09]
gi|333809625|gb|AEG02295.1| Ribosomal RNA large subunit methyltransferase N [Methylomonas
methanica MC09]
Length = 371
Score = 213 bits (541), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 138/370 (37%), Positives = 206/370 (55%), Gaps = 40/370 (10%)
Query: 17 EFEKAGIKQHFIPL---------IWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTST 67
+F++ G++ F+ L + K++ + ++D+ +L + S L+ T
Sbjct: 17 DFDRKGLQAFFVGLGEKPFRATQLLKWIYQEGAVDFDDMTNLSKSLRSYLKENCCIRTPE 76
Query: 68 LHSVVDSSDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGC 127
+ + +SD T K ++ G VE V + P R+TLCISSQVGC
Sbjct: 77 IVAEQLASDG-TCKWAMQTHCGNKVETVYI--------------PEERRATLCISSQVGC 121
Query: 128 KMGCNFCATGTMGFKSNLSSGEIVEQLVHA-SRLSN---IRNVVFMGMGEPLNNYAALVE 183
+ C+FC+T GF NLS+ E++ QL A RL + I NVV MGMGEPL N+ +V
Sbjct: 122 ALACSFCSTAQQGFNRNLSTAEVIGQLYLAQQRLGSEHRITNVVMMGMGEPLLNFDNVVA 181
Query: 184 AVRIMT-GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAA 242
A+ +M F +S +R+T+ST G+V A+++ H D+ +++AVSLHAP ++R Q++P
Sbjct: 182 AMNLMMDDFAFGLSKRRVTISTSGVVPAMHRLH-DVCDVSMAVSLHAPNDELRNQLVPIN 240
Query: 243 RAFPLEKLMNALKEYQKNSQQK-IFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPF 301
+PL +LM+A + Y KN +K I EY+MLDG+ND + A L KLL+ VNLIPF
Sbjct: 241 IKYPLTELMDACRAYAKNGPRKHITFEYVMLDGINDSMEDARTLVKLLKNVPSKVNLIPF 300
Query: 302 NPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDKI--- 358
NP SQ+R S + F+ IL + I TT+RK G DI ACGQLV + DK
Sbjct: 301 NPFPQ-SQYRCSEMAAILKFRDILHNA-GIVTTIRKTRGDDIDAACGQLVGQVQDKSRRH 358
Query: 359 ----SAKSTP 364
+A++TP
Sbjct: 359 LKLQAARTTP 368
>gi|372270406|ref|ZP_09506454.1| radical SAM protein [Marinobacterium stanieri S30]
Length = 377
Score = 213 bits (541), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 132/370 (35%), Positives = 208/370 (56%), Gaps = 39/370 (10%)
Query: 16 AEFEKAGIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHSVV--- 72
A FE+ G K+ + K++ + +DE ++ A +R+K + V
Sbjct: 20 AFFEQQGEKKFRATQVLKWLHQQGASSFDEMTNISKA----MRAKLAEVAEIREPEVLLD 75
Query: 73 DSSDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCN 132
+S D T K ++++ G +E V++ P G R TLC+SSQVGC + C+
Sbjct: 76 KTSRDGTRKWVIRMDGGSAIEMVLI--------------PDGDRRTLCVSSQVGCSLDCS 121
Query: 133 FCATGTMGFKSNLSSGEIVEQLVHASR--------LSNIRNVVFMGMGEPLNNYAALVEA 184
FC+TG GF NLS+ EI+ QL A R ++ NVV MGMGEPL N+ +V+A
Sbjct: 122 FCSTGKQGFNRNLSTAEIIAQLRVAIRSCGPFEPSKRHVTNVVMMGMGEPLMNFENVVDA 181
Query: 185 VRIMTGL-PFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAAR 243
++M + +S +R+T+ST G+V A++K S + ++LA+SLHAP ++R Q++P +
Sbjct: 182 TQLMMDDNAYGLSKRRVTLSTAGVVPALDKL-SQVSDVSLAISLHAPNNELRDQLVPINK 240
Query: 244 AFPLEKLMNALKEYQKN--SQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPF 301
+P+E+L+ A Y ++ ++ +EY ++DGVND+ +HA +L KLL+ +NLIPF
Sbjct: 241 RYPIEELIAASNRYLESLPDKRAATVEYTLIDGVNDQPEHARELAKLLKQLPCKLNLIPF 300
Query: 302 NPIGSVSQFRTSSDDKVSSFQKIL-RGSYNIRTTVRKQMGQDISGACGQLVVNLPDKI-- 358
NP + S +R S+ + F+ IL R S I TTVR+ G D+ ACGQLV + D+
Sbjct: 301 NPFPN-SGYRRPSEQAIQRFKDILVRAS--IITTVRRTRGDDVDAACGQLVGQVEDRTRR 357
Query: 359 SAKSTPPVTD 368
S K P V +
Sbjct: 358 SQKYIPVVQE 367
>gi|313140311|ref|ZP_07802504.1| conserved hypothetical protein [Bifidobacterium bifidum NCIMB
41171]
gi|313132821|gb|EFR50438.1| conserved hypothetical protein [Bifidobacterium bifidum NCIMB
41171]
Length = 396
Score = 213 bits (541), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 127/337 (37%), Positives = 190/337 (56%), Gaps = 36/337 (10%)
Query: 42 EWDEFPSLPSAAYS-LLRSKFKPLTSTL-HSVVDSSDDVTTKLLVKLQNGGFVEAVIMRY 99
E + F LP+A ++ + F PL + H V D T K L +L +G +E+V+MRY
Sbjct: 78 ESEAFTDLPAATRGDIVEAFFPPLIDEVTHQVADQG--TTIKTLWRLFDGSHIESVLMRY 135
Query: 100 DSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASR 159
+ R+TLCISSQVGC MGC FCATG +G N+S+GEI+EQ+ A+R
Sbjct: 136 PN--------------RTTLCISSQVGCGMGCPFCATGKLGLTRNMSTGEILEQVRVAAR 181
Query: 160 L----------SNIRNVVFMGMGEPLNNYAALVEAVRIMTGLP---FQVSPKRITVSTVG 206
+ + N+VFMGMGEP+ NY +++ AVR ++ +P F +S + ITVSTVG
Sbjct: 182 MMRDGEVAGGPGRLSNIVFMGMGEPMGNYRSVLSAVRQISAMPPEGFGISARNITVSTVG 241
Query: 207 IVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIF 266
+V I K ++ + LAVSLHAP +R +++P + F ++++A +Y +S++++
Sbjct: 242 VVPGIRKLAAEGIPVRLAVSLHAPSDALRDELVPMNKRFNTTQVLDAAHDYFLSSKRRVS 301
Query: 267 IEYIMLDGVNDEEQHAHQLGKLLETF---QVVVNLIPFNPIGSVSQFRTSSDDKVSSFQK 323
IEY ++ G+ND+ +HA L K L + VN IP NPI S++ S + F
Sbjct: 302 IEYALMRGINDQAEHARLLAKRLNHYGDDWAHVNPIPLNPIEG-SRWTASKPEDEQQFLD 360
Query: 324 ILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDKISA 360
IL + I T+R G DI GACGQL + +A
Sbjct: 361 ILHHA-GITATLRDTRGSDIDGACGQLAAKTKEAFAA 396
>gi|421735563|ref|ZP_16174479.1| ribosomal RNA large subunit methyltransferase N [Bifidobacterium
bifidum IPLA 20015]
gi|407297152|gb|EKF16618.1| ribosomal RNA large subunit methyltransferase N [Bifidobacterium
bifidum IPLA 20015]
Length = 396
Score = 213 bits (541), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 127/337 (37%), Positives = 190/337 (56%), Gaps = 36/337 (10%)
Query: 42 EWDEFPSLPSAAYS-LLRSKFKPLTSTL-HSVVDSSDDVTTKLLVKLQNGGFVEAVIMRY 99
E + F LP+A ++ + F PL + H V D T K L +L +G +E+V+MRY
Sbjct: 78 ESEAFTDLPAATRGDIVEAFFPPLIDEVTHQVADQG--TTIKTLWRLFDGSHIESVLMRY 135
Query: 100 DSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASR 159
+ R+TLCISSQVGC MGC FCATG +G N+S+GEI+EQ+ A+R
Sbjct: 136 PN--------------RTTLCISSQVGCGMGCPFCATGKLGLTRNMSTGEILEQVRVAAR 181
Query: 160 L----------SNIRNVVFMGMGEPLNNYAALVEAVRIMTGLP---FQVSPKRITVSTVG 206
+ + N+VFMGMGEP+ NY +++ AVR ++ +P F +S + ITVSTVG
Sbjct: 182 MMRDGEVAGGPGRLSNIVFMGMGEPMGNYRSVLSAVRQISAMPPEGFGISARNITVSTVG 241
Query: 207 IVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIF 266
+V I K ++ + LAVSLHAP +R +++P + F ++++A +Y +S++++
Sbjct: 242 VVPGIRKLAAEGIPVRLAVSLHAPSDALRDELVPMNKRFNTTQVLDAAHDYFLSSKRRVS 301
Query: 267 IEYIMLDGVNDEEQHAHQLGKLLETF---QVVVNLIPFNPIGSVSQFRTSSDDKVSSFQK 323
IEY ++ G+ND+ +HA L K L + VN IP NPI S++ S + F
Sbjct: 302 IEYALMRGINDQAEHARLLAKRLNHYGDDWAHVNPIPLNPIEG-SRWTASKPEDEQQFLD 360
Query: 324 ILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDKISA 360
IL + I T+R G DI GACGQL + +A
Sbjct: 361 ILHRA-GITATLRDTRGSDIDGACGQLAAKTKEAFAA 396
>gi|421734108|ref|ZP_16173195.1| ribosomal RNA large subunit methyltransferase N [Bifidobacterium
bifidum LMG 13195]
gi|407077996|gb|EKE50815.1| ribosomal RNA large subunit methyltransferase N [Bifidobacterium
bifidum LMG 13195]
Length = 396
Score = 213 bits (541), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 127/337 (37%), Positives = 189/337 (56%), Gaps = 36/337 (10%)
Query: 42 EWDEFPSLPSAAYS-LLRSKFKPLTSTL-HSVVDSSDDVTTKLLVKLQNGGFVEAVIMRY 99
E + F LP+A ++ + F PL + H V D T K L +L +G +E+V+MRY
Sbjct: 78 ESEAFTDLPAATRGDIVEAFFPPLIDEVTHQVADQG--TTIKTLWRLFDGSHIESVLMRY 135
Query: 100 DSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASR 159
R+TLCISSQVGC MGC FCATG +G N+S+GEI+EQ+ A+R
Sbjct: 136 PD--------------RTTLCISSQVGCGMGCPFCATGKLGLTRNMSAGEILEQVRVAAR 181
Query: 160 L----------SNIRNVVFMGMGEPLNNYAALVEAVRIMTGLP---FQVSPKRITVSTVG 206
+ + N+VFMGMGEP+ NY +++ AVR ++ +P F +S + ITVSTVG
Sbjct: 182 MMRDGEVTGGPGRLSNIVFMGMGEPMGNYRSVLSAVRQISAMPPEGFGISARNITVSTVG 241
Query: 207 IVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIF 266
+V I K ++ + LAVSLHAP +R +++P + F ++++A +Y +S++++
Sbjct: 242 VVPGIRKLAAEGIPVRLAVSLHAPSDALRDELVPMNKRFNTTQVLDAAHDYFLSSKRRVS 301
Query: 267 IEYIMLDGVNDEEQHAHQLGKLLETF---QVVVNLIPFNPIGSVSQFRTSSDDKVSSFQK 323
IEY ++ G+ND+ +HA L K L + VN IP NPI S++ S + F
Sbjct: 302 IEYALMRGINDQAEHARLLAKRLNHYGDDWAHVNPIPLNPIEG-SRWTASKPEDEQQFLD 360
Query: 324 ILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDKISA 360
IL + I T+R G DI GACGQL + +A
Sbjct: 361 ILHHA-GITATLRDTRGSDIDGACGQLAAKTKEAFAA 396
>gi|310287528|ref|YP_003938786.1| radical SAM enzyme, Cfr family [Bifidobacterium bifidum S17]
gi|311064441|ref|YP_003971166.1| radical SAM family protein [Bifidobacterium bifidum PRL2010]
gi|309251464|gb|ADO53212.1| radical SAM enzyme, Cfr family [Bifidobacterium bifidum S17]
gi|310866760|gb|ADP36129.1| Radical SAM family enzyme [Bifidobacterium bifidum PRL2010]
Length = 396
Score = 213 bits (541), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 127/337 (37%), Positives = 190/337 (56%), Gaps = 36/337 (10%)
Query: 42 EWDEFPSLPSAAYS-LLRSKFKPLTSTL-HSVVDSSDDVTTKLLVKLQNGGFVEAVIMRY 99
E + F LP+A ++ + F PL + H V D T K L +L +G +E+V+MRY
Sbjct: 78 ESEAFTDLPAATRGDIVEAFFPPLIDEVTHQVADQG--TTIKTLWRLFDGSHIESVLMRY 135
Query: 100 DSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASR 159
+ R+TLCISSQVGC MGC FCATG +G N+S+GEI+EQ+ A+R
Sbjct: 136 PN--------------RTTLCISSQVGCGMGCPFCATGKLGLTRNMSTGEILEQVRVAAR 181
Query: 160 L----------SNIRNVVFMGMGEPLNNYAALVEAVRIMTGLP---FQVSPKRITVSTVG 206
+ + N+VFMGMGEP+ NY +++ AVR ++ +P F +S + ITVSTVG
Sbjct: 182 MMRDGEVAGGPGRLSNIVFMGMGEPMGNYRSVLSAVRQISAMPPEGFGISARNITVSTVG 241
Query: 207 IVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIF 266
+V I K ++ + LAVSLHAP +R +++P + F ++++A +Y +S++++
Sbjct: 242 VVPGIRKLTAEGIPVRLAVSLHAPSDALRDELVPMNKRFNTTQVLDAAHDYFLSSKRRVS 301
Query: 267 IEYIMLDGVNDEEQHAHQLGKLLETF---QVVVNLIPFNPIGSVSQFRTSSDDKVSSFQK 323
IEY ++ G+ND+ +HA L K L + VN IP NPI S++ S + F
Sbjct: 302 IEYALMRGINDQAEHARLLAKRLNHYGDDWAHVNPIPLNPIEG-SRWTASKPEDEQQFLD 360
Query: 324 ILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDKISA 360
IL + I T+R G DI GACGQL + +A
Sbjct: 361 ILHHA-GITATLRDTRGSDIDGACGQLAAKTKEAFAA 396
>gi|390936902|ref|YP_006394461.1| radical SAM protein [Bifidobacterium bifidum BGN4]
gi|389890515|gb|AFL04582.1| radical SAM enzyme, Cfr family protein [Bifidobacterium bifidum
BGN4]
Length = 396
Score = 213 bits (541), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 127/337 (37%), Positives = 190/337 (56%), Gaps = 36/337 (10%)
Query: 42 EWDEFPSLPSAAYS-LLRSKFKPLTSTL-HSVVDSSDDVTTKLLVKLQNGGFVEAVIMRY 99
E + F LP+A ++ + F PL + H V D T K L +L +G +E+V+MRY
Sbjct: 78 ESEAFTDLPAATRGDIVEAFFPPLIDEVTHQVADQG--TTIKTLWRLFDGSHIESVLMRY 135
Query: 100 DSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASR 159
+ R+TLCISSQVGC MGC FCATG +G N+S+GEI+EQ+ A+R
Sbjct: 136 PN--------------RTTLCISSQVGCGMGCPFCATGKLGLTRNMSTGEILEQVRVAAR 181
Query: 160 L----------SNIRNVVFMGMGEPLNNYAALVEAVRIMTGLP---FQVSPKRITVSTVG 206
+ + N+VFMGMGEP+ NY +++ AVR ++ +P F +S + ITVSTVG
Sbjct: 182 MMRDGEVAGGPGRLSNIVFMGMGEPMGNYRSVLSAVRQISAMPPEGFGISARNITVSTVG 241
Query: 207 IVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIF 266
+V I K ++ + LAVSLHAP +R +++P + F ++++A +Y +S++++
Sbjct: 242 VVPGIRKLTAEGIPVRLAVSLHAPSDALRDELVPMNKRFNTTQVLDAAHDYFLSSKRRVS 301
Query: 267 IEYIMLDGVNDEEQHAHQLGKLLETF---QVVVNLIPFNPIGSVSQFRTSSDDKVSSFQK 323
IEY ++ G+ND+ +HA L K L + VN IP NPI S++ S + F
Sbjct: 302 IEYALMRGINDQAEHARLLAKRLNHYGDDWAHVNPIPLNPIEG-SRWTASKPEDEQQFLD 360
Query: 324 ILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDKISA 360
IL + I T+R G DI GACGQL + +A
Sbjct: 361 ILHRA-GITATLRDTRGSDIDGACGQLAAKTKEAFAA 396
>gi|350563236|ref|ZP_08932058.1| radical SAM enzyme, Cfr family [Thioalkalimicrobium aerophilum AL3]
gi|349779100|gb|EGZ33447.1| radical SAM enzyme, Cfr family [Thioalkalimicrobium aerophilum AL3]
Length = 378
Score = 212 bits (540), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 129/325 (39%), Positives = 181/325 (55%), Gaps = 38/325 (11%)
Query: 54 YSLLRSKFKPLTSTL--HSVVDS--------SDDVTTKLLVKLQNGGFVEAVIMRYDSSL 103
+ L+ + KPL L H+ + S SDD T K L+++ +E V +
Sbjct: 56 FDLMTNISKPLREKLKQHAWIRSPKIVTEQLSDDGTIKWLIEVDQQNCIETVFI------ 109
Query: 104 GKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRL--- 160
P R TLCISSQVGC + C+FCAT GF NL + EI+ Q+ A++
Sbjct: 110 --------PEADRGTLCISSQVGCALDCSFCATAQQGFNRNLENWEIIAQMWVANKALGA 161
Query: 161 -----SNIRNVVFMGMGEPLNNYAALVEAVRI-MTGLPFQVSPKRITVSTVGIVHAINKF 214
I NVVFMGMGEPL N + ++ M + +S +R+T+ST G+V AI+K
Sbjct: 162 NPKAERKISNVVFMGMGEPLLNVTHVFPVAKLLMDDNAYGLSKRRVTISTAGVVPAIDKL 221
Query: 215 HSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQK--IFIEYIML 272
++ ++LA+SLHAP +R Q++P + +PLE LM AL Y + K I +EY+ML
Sbjct: 222 KDEV-DVSLAISLHAPNNALRDQLVPINKKYPLEVLMPALHRYVADGHAKKHITVEYVML 280
Query: 273 DGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIR 332
D VNDEE+HAHQL +LL VNLIPFNP + R SS+++V FQ++L + I
Sbjct: 281 DQVNDEEEHAHQLVELLGNLICKVNLIPFNPFPNTPYLR-SSNNRVHRFQRVLHEA-GIN 338
Query: 333 TTVRKQMGQDISGACGQLVVNLPDK 357
T+RK G DI ACGQL + D+
Sbjct: 339 CTIRKTRGDDIDAACGQLAGKVKDR 363
>gi|345892533|ref|ZP_08843352.1| ribosomal RNA large subunit methyltransferase N [Desulfovibrio sp.
6_1_46AFAA]
gi|345047025|gb|EGW50894.1| ribosomal RNA large subunit methyltransferase N [Desulfovibrio sp.
6_1_46AFAA]
Length = 353
Score = 212 bits (540), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 129/332 (38%), Positives = 193/332 (58%), Gaps = 28/332 (8%)
Query: 31 IWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHSVVDSSDDVTTKLLVKLQNGG 90
+W+++ + ++D ++ A + L + + V +SSD TTK L++L++G
Sbjct: 30 VWQWIWQKMARDFDAMSNVSKACRARLAETARIDWPEVARVQESSDG-TTKFLLRLEDGA 88
Query: 91 FVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEI 150
VE V++ DS R G R T C+SSQVGC MGC FCATG MGF+ N++ GEI
Sbjct: 89 LVETVLIPSDS---------REGVRRWTQCLSSQVGCAMGCTFCATGDMGFERNMTMGEI 139
Query: 151 VEQ-LVHASRLSN-------IRNVVFMGMGEPLNNYAALVEAVRIMT---GLPFQVSPKR 199
+ Q LV L + +RN+VFMGMGEPL N ++ A++ + GL F SP+R
Sbjct: 140 LGQILVAREHLGDNRPDWPVLRNLVFMGMGEPLLNLREVMRALQSLNNDKGLNF--SPRR 197
Query: 200 ITVSTVGIVHAINKFHSDLPGLN-LAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQ 258
ITVST GI + + + GL LAVSLHAP Q++R +IMP A +PL++L+ ALK Y
Sbjct: 198 ITVSTCGIEKGLAELGAS--GLAYLAVSLHAPTQELRARIMPKAARWPLDQLLAALKSYP 255
Query: 259 KNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKV 318
++++I EY++L G+ND A +L +L+ + +NLI +NP + + + +V
Sbjct: 256 LKTRERITFEYLLLGGINDGPGQAEELARLVADIKGKLNLIVYNP-AEGAPYAAPDEARV 314
Query: 319 SSFQKILRGSYNIRTTVRKQMGQDISGACGQL 350
+F++ L +I VRK GQDI ACGQL
Sbjct: 315 LAFEQCL-WKRHITAIVRKSKGQDIKAACGQL 345
>gi|23335166|ref|ZP_00120404.1| COG0820: Predicted Fe-S-cluster redox enzyme [Bifidobacterium
longum DJO10A]
gi|189439272|ref|YP_001954353.1| ribosomal RNA large subunit methyltransferase N [Bifidobacterium
longum DJO10A]
gi|322689304|ref|YP_004209038.1| hypothetical protein BLIF_1118 [Bifidobacterium longum subsp.
infantis 157F]
gi|189427707|gb|ACD97855.1| Hypothetical Fe-S-cluster redox enzyme [Bifidobacterium longum
DJO10A]
gi|320460640|dbj|BAJ71260.1| conserved hypothetical protein [Bifidobacterium longum subsp.
infantis 157F]
Length = 389
Score = 212 bits (540), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 126/326 (38%), Positives = 186/326 (57%), Gaps = 36/326 (11%)
Query: 45 EFPSLPSAAYSLLRSKFKP--LTSTLHSVVDSSDDVTTKLLVKLQNGGFVEAVIMRYDSS 102
EF P+A S + F P +T V D + T K L KL +G +E+V+MRY +
Sbjct: 79 EFTDFPAAKRSEAAAAFFPQLITEVTRQVAD--EGTTIKTLWKLFDGSLIESVLMRYPT- 135
Query: 103 LGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRL-- 160
R+TLCISSQVGC MGC FCATG +G N+S+GEI+EQ+ A+++
Sbjct: 136 -------------RTTLCISSQVGCGMGCPFCATGKLGLTRNMSTGEIIEQVRVAAKMMR 182
Query: 161 --------SNIRNVVFMGMGEPLNNYAALVEAVRIMTGLP---FQVSPKRITVSTVGIVH 209
+ N+VFMGMGEP+ NY +++ AVR ++ +P F +S + ITVSTVG+V
Sbjct: 183 DGEVAGGEGRLSNIVFMGMGEPMGNYNSVLSAVRQISAMPPEGFGISARNITVSTVGVVP 242
Query: 210 AINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEY 269
I K ++ + LAVSLHAP ++R +++P + F ++++A +Y S++++ IEY
Sbjct: 243 GIKKLTAEGIPVRLAVSLHAPSDELRDELVPMNKRFNTAQVLDAAHDYWLASKRRVSIEY 302
Query: 270 IMLDGVNDEEQHAHQLGKLLETF---QVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILR 326
++ G+ND+ +HA L K L + VN IP NPI S++ S + F +IL
Sbjct: 303 ALMRGINDQAEHAQLLAKRLNHYGDNWAHVNPIPLNPIEG-SKWTASKPEDEQRFLEILH 361
Query: 327 GSYNIRTTVRKQMGQDISGACGQLVV 352
+ I T+R GQDI GACGQL
Sbjct: 362 RA-GITATLRDTRGQDIDGACGQLAA 386
>gi|421525773|ref|ZP_15972383.1| florfenicol resistance protein [Fusobacterium nucleatum ChDC F128]
gi|402258342|gb|EJU08814.1| florfenicol resistance protein [Fusobacterium nucleatum ChDC F128]
Length = 358
Score = 212 bits (540), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 127/330 (38%), Positives = 184/330 (55%), Gaps = 23/330 (6%)
Query: 30 LIW--KYVIENPNCEWDEFPSLPSAAYSLLRSK-FKPLTSTLHSVVDSSDDVTTKLLVKL 86
IW K ++ N +DE +L +L+ K + PL + L V S D T K L +L
Sbjct: 34 FIWLHKKIVRN----FDEMTNLSLKDREILKEKTYIPLFNLLKYQV-SKIDKTEKFLFEL 88
Query: 87 QNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLS 146
++GG +E V++R+ S K R+TLC+SSQVGC + C+FCATG G+ NLS
Sbjct: 89 EDGGTIETVLLRHKDSKNK--------EIRNTLCVSSQVGCPVKCSFCATGQSGYMRNLS 140
Query: 147 SGEIVEQLVHASRL-----SNIRNVVFMGMGEPLNNYAALVEAVRIMTGLP-FQVSPKRI 200
EI+ Q+ R N+ N+VFMGMGEPL N L +++ I++ +S ++I
Sbjct: 141 VSEILNQVYTVERRLRKKGENLNNLVFMGMGEPLLNIDNLAKSLSIISNENGVNISKRKI 200
Query: 201 TVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKN 260
T+ST GIV I K D + LA+SLH+ + + R +I+P + FPLE L L EYQK
Sbjct: 201 TISTSGIVSGIEKILLDKIPIELAISLHSAINEKRDKIIPINKNFPLEDLSAVLVEYQKQ 260
Query: 261 SQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSS 320
++++I EYI++D N E A+ L + F VVNLIP+N + V R S K+
Sbjct: 261 TKRRITFEYILIDNFNISEADANALADFIHQFDHVVNLIPYNEVEGVEHTRPSV-KKIEK 319
Query: 321 FQKILRGSYNIRTTVRKQMGQDISGACGQL 350
F L+ + T+R++ G DI GACGQL
Sbjct: 320 FYNYLKNVRRVNVTLRQEKGSDIDGACGQL 349
>gi|213691945|ref|YP_002322531.1| ribosomal RNA large subunit methyltransferase N [Bifidobacterium
longum subsp. infantis ATCC 15697 = JCM 1222]
gi|384199100|ref|YP_005584843.1| hypothetical protein [Bifidobacterium longum subsp. infantis ATCC
15697 = JCM 1222]
gi|213523406|gb|ACJ52153.1| radical SAM enzyme, Cfr family [Bifidobacterium longum subsp.
infantis ATCC 15697 = JCM 1222]
gi|320458052|dbj|BAJ68673.1| conserved hypothetical protein [Bifidobacterium longum subsp.
infantis ATCC 15697 = JCM 1222]
Length = 389
Score = 212 bits (540), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 126/326 (38%), Positives = 186/326 (57%), Gaps = 36/326 (11%)
Query: 45 EFPSLPSAAYSLLRSKFKP--LTSTLHSVVDSSDDVTTKLLVKLQNGGFVEAVIMRYDSS 102
EF P+A S + F P +T V D + T K L KL +G +E+V+MRY +
Sbjct: 79 EFTDFPAAKRSEAAAAFFPQLITEVTRQVAD--EGTTIKTLWKLFDGSLIESVLMRYPT- 135
Query: 103 LGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRL-- 160
R+TLCISSQVGC MGC FCATG +G N+S+GEI+EQ+ A+++
Sbjct: 136 -------------RTTLCISSQVGCGMGCPFCATGKLGLTRNMSTGEIIEQVRVAAKMMR 182
Query: 161 --------SNIRNVVFMGMGEPLNNYAALVEAVRIMTGLP---FQVSPKRITVSTVGIVH 209
+ N+VFMGMGEP+ NY +++ AVR ++ +P F +S + ITVSTVG+V
Sbjct: 183 DGEVAGGAGRLSNIVFMGMGEPMGNYNSVLSAVRQISAMPPEGFGISARNITVSTVGVVP 242
Query: 210 AINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEY 269
I K ++ + LAVSLHAP ++R +++P + F ++++A +Y S++++ IEY
Sbjct: 243 GIKKLTAEGIPVRLAVSLHAPSDELRDELVPMNKRFNTTQVLDAAHDYWLASKRRVSIEY 302
Query: 270 IMLDGVNDEEQHAHQLGKLLETF---QVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILR 326
++ G+ND+ +HA L K L + VN IP NPI S++ S + F +IL
Sbjct: 303 ALMRGINDQAEHAQLLAKRLNHYGDNWAHVNPIPLNPIEG-SKWTASKPEDEQRFLEILH 361
Query: 327 GSYNIRTTVRKQMGQDISGACGQLVV 352
+ I T+R GQDI GACGQL
Sbjct: 362 RA-GITATLRDTRGQDIDGACGQLAA 386
>gi|282857182|ref|ZP_06266426.1| 23S rRNA m2A2503 methyltransferase [Pyramidobacter piscolens W5455]
gi|282584968|gb|EFB90292.1| 23S rRNA m2A2503 methyltransferase [Pyramidobacter piscolens W5455]
Length = 365
Score = 212 bits (540), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 121/284 (42%), Positives = 166/284 (58%), Gaps = 27/284 (9%)
Query: 74 SSDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNF 133
++ D T K L +L +G +VE+V+M + G T CISSQVGC + C F
Sbjct: 96 TAADGTRKYLWRLDDGEYVESVLMDH--------------GNHYTACISSQVGCPLRCEF 141
Query: 134 CATGTMGFKSNLSSGEIVEQL--VHASRLSNIRNVVFMGMGEPLNNYAALVEAVRI---- 187
CATG GFK NLS+GEIV + + +I NVVFMGMGEPL NY +V+AVR+
Sbjct: 142 CATGQQGFKRNLSAGEIVSHFAAMESDVGHDINNVVFMGMGEPLLNYENVVKAVRMFLEP 201
Query: 188 -MTGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFP 246
M GL S + +T+ST GI I + + + L +SLHAP ++R +IMP FP
Sbjct: 202 KMRGL----SVRHVTISTSGIPEGIRRLADEGLDIYLCLSLHAPNNELRSRIMPVNERFP 257
Query: 247 LEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGS 306
L + +AL+ +QK + ++ IEY+ML VND A++L L QV VNLIP+NP+
Sbjct: 258 LGAVFSALEYWQKKTGVRLTIEYVMLKNVNDTPDCAYELATLFSNLQVYVNLIPYNPVAG 317
Query: 307 VSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 350
+QF S +++ F KIL+G N+ VRK+ G DI ACGQL
Sbjct: 318 -TQFARPSASRIAPFMKILKG-LNVECEVRKEHGADIDAACGQL 359
>gi|225352146|ref|ZP_03743169.1| hypothetical protein BIFPSEUDO_03761 [Bifidobacterium
pseudocatenulatum DSM 20438 = JCM 1200]
gi|225157393|gb|EEG70732.1| hypothetical protein BIFPSEUDO_03761 [Bifidobacterium
pseudocatenulatum DSM 20438 = JCM 1200]
Length = 393
Score = 212 bits (540), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 126/331 (38%), Positives = 186/331 (56%), Gaps = 36/331 (10%)
Query: 44 DEFPSLPSAAYSLLRSKFKP--LTSTLHSVVDSSDDVTTKLLVKLQNGGFVEAVIMRYDS 101
+EF P+A + F P +T V D + T K L +L +G +E+V+MRY +
Sbjct: 81 EEFSDFPAAKRAEAAEAFFPTLITEVTRQVAD--EGTTIKTLWRLFDGSLIESVLMRYPT 138
Query: 102 SLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASR-- 159
R+TLCISSQVGC MGC FCATG +G N+S+GEI+EQ+ A++
Sbjct: 139 --------------RTTLCISSQVGCGMGCPFCATGQLGLTRNMSAGEILEQVRVAAKAM 184
Query: 160 --------LSNIRNVVFMGMGEPLNNYAALVEAVRIMTGLP---FQVSPKRITVSTVGIV 208
L + N+VFMGMGEP+ NY +++ AVR ++ +P F +S + ITVSTVG+V
Sbjct: 185 HDGEVAGGLGRLSNIVFMGMGEPMGNYKSVLSAVRQISAMPPEGFGISARNITVSTVGVV 244
Query: 209 HAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIE 268
I K ++ + LAVSLHAP ++R +++P + F ++++A +Y S++++ IE
Sbjct: 245 PGIKKLTAEGIPVRLAVSLHAPSDELRDELVPMNKRFNTTQVLDAAHDYYLASKRRVSIE 304
Query: 269 YIMLDGVNDEEQHAHQLGKLLETF---QVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKIL 325
Y ++ G+ND+ +HA L K L + VN IP NPI S++ S + F IL
Sbjct: 305 YALMRGINDQAEHAKLLAKRLNHYGDNWAHVNPIPLNPIEG-SKWTASKPEDEQQFLDIL 363
Query: 326 RGSYNIRTTVRKQMGQDISGACGQLVVNLPD 356
+ I T+R GQDI GACGQL D
Sbjct: 364 HKA-GITATLRDTRGQDIDGACGQLAAKEQD 393
>gi|149200056|ref|ZP_01877081.1| YloN [Lentisphaera araneosa HTCC2155]
gi|149136814|gb|EDM25242.1| YloN [Lentisphaera araneosa HTCC2155]
Length = 345
Score = 212 bits (539), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 122/330 (36%), Positives = 187/330 (56%), Gaps = 29/330 (8%)
Query: 36 IENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHSVVDSSDDVTTKLLVKLQNGGFVEAV 95
E+ +D+ + P + L + + L T++ V SSD VT K L++L +G +E+V
Sbjct: 28 FEHHYSSFDQLTNFPKDLRNKLTEENQVLCLTVNKVFASSDQVTYKALLELHDGLKIESV 87
Query: 96 IMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLV 155
+M P+PG T CISSQVGC M C+FCATGTMG NL+S EI +Q++
Sbjct: 88 LM-----------SPKPG--LWTACISSQVGCAMKCSFCATGTMGLTRNLTSEEISDQVL 134
Query: 156 HASRL--------SNIRNVVFMGMGEPLNNYAALVEAVRIMTGL-PFQVSPKRITVSTVG 206
+ + NVV+MGMGEPL+N + ++ +T F++ + I+VST G
Sbjct: 135 FWRQFIAKNDIDTDRLNNVVYMGMGEPLHNTKEVFSSIEELTAEDSFKIGSRHISVSTSG 194
Query: 207 IVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIF 266
++ + + P +NLA+SLHA ++R IMP +AF LEK+ L EY ++ +K+F
Sbjct: 195 LLKGVKEMAEKFPQVNLALSLHAAKDELRSSIMPINKAFDLEKIRTCLDEYIDSTHRKVF 254
Query: 267 IEYIMLDGVNDEEQHAHQLGKLLETFQ----VVVNLIPFNPIGSVSQFRTSSDDKVSSFQ 322
IEY++L+G N+E HA +L K L++ + NLI +N S+ + S+ K F+
Sbjct: 255 IEYVLLEGENNELSHAVELSKFLKSLKRPELTHTNLIVYNETD--SEHKGSTKQKADQFR 312
Query: 323 KILRGSYNIRTTVRKQMGQDISGACGQLVV 352
L+ S + T+RK +G+DI GACGQL V
Sbjct: 313 NHLK-SKGLSVTIRKNLGRDIDGACGQLAV 341
>gi|306822705|ref|ZP_07456083.1| cfr family radical SAM enzyme [Bifidobacterium dentium ATCC 27679]
gi|304554250|gb|EFM42159.1| cfr family radical SAM enzyme [Bifidobacterium dentium ATCC 27679]
Length = 393
Score = 212 bits (539), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 123/331 (37%), Positives = 186/331 (56%), Gaps = 36/331 (10%)
Query: 40 NCEWDEFPSLPSAAYSLLRSKFKP--LTSTLHSVVDSSDDVTTKLLVKLQNGGFVEAVIM 97
+ + +EF P+ + F P +T V D + T K L +L +G +E+V+M
Sbjct: 77 DVDAEEFSDFPANKRAEAAEAFFPTLITEVTRQVAD--EGTTIKTLWRLFDGSLIESVLM 134
Query: 98 RYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHA 157
RY + R+TLCISSQVGC MGC FCATG +G N+S+GEIVEQ+ A
Sbjct: 135 RYPT--------------RTTLCISSQVGCGMGCPFCATGKLGLTRNMSAGEIVEQVRVA 180
Query: 158 SRL----------SNIRNVVFMGMGEPLNNYAALVEAVRIMTGLP---FQVSPKRITVST 204
++ + N+VFMGMGEP+ NY +++ AVR ++ +P F +S + ITVST
Sbjct: 181 AKAMRDGEVAGGPGRLSNIVFMGMGEPMGNYRSVLSAVRQISAMPPEGFGISARNITVST 240
Query: 205 VGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQK 264
VG+V I K ++ + LAVSLHAP ++R +++P + F + ++++A +Y S+++
Sbjct: 241 VGVVPGIKKLTAEGIPVRLAVSLHAPSDELRDELVPMNKRFDITQVLDAAHDYYLASKRR 300
Query: 265 IFIEYIMLDGVNDEEQHAHQLGKLLETF---QVVVNLIPFNPIGSVSQFRTSSDDKVSSF 321
+ IEY ++ G+ND+ +HA L K L + VN IP NPI S++ S + F
Sbjct: 301 VSIEYALMRGINDQAEHARLLAKRLNHYGDNWAHVNPIPLNPIEG-SKWTASKPEDERRF 359
Query: 322 QKILRGSYNIRTTVRKQMGQDISGACGQLVV 352
IL + + T+R GQDI GACGQL
Sbjct: 360 LDILHQA-GVTATLRDTRGQDIDGACGQLAA 389
>gi|345872018|ref|ZP_08823958.1| Ribosomal RNA large subunit methyltransferase N [Thiorhodococcus
drewsii AZ1]
gi|343919552|gb|EGV30298.1| Ribosomal RNA large subunit methyltransferase N [Thiorhodococcus
drewsii AZ1]
Length = 365
Score = 212 bits (539), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 131/334 (39%), Positives = 192/334 (57%), Gaps = 28/334 (8%)
Query: 31 IWKYVIENPNCEWDEFPSLPSAAYSLLRSK---FKPLTSTLHSVVDSSDDVTTKLLVKLQ 87
++K++ ++ ++D +P LR + P H S+D TTK +++L
Sbjct: 35 LFKWIHKHGVTDYDAMTDVPKRLREALRGTVDIYLPRIIADHP----SEDGTTKWVMELA 90
Query: 88 NGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSS 147
+G +E V + P G RST+C+SSQVGC + C FCAT GF NLS
Sbjct: 91 DGQRIETVFI--------------PEGKRSTICVSSQVGCALECAFCATARQGFNRNLSV 136
Query: 148 GEIVEQLVHASRL--SNIRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVST 204
EIV Q+ HA+R + NVV MGMGEPL N+ A V+A+ IM L + ++ +R+T+ST
Sbjct: 137 AEIVGQVWHAARQLGTAPTNVVMMGMGEPLANFEAAVKAMDIMQDDLAYMLAKQRVTLST 196
Query: 205 VGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQ-Q 263
GIV I + ++ ++LAVSLHAP ++R Q++P R +PL +L+ A K Y N + +
Sbjct: 197 SGIVPNIYRLR-EVSDVSLAVSLHAPNDELRDQLVPINRKYPLSELIPACKAYIANDKRR 255
Query: 264 KIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQK 323
K+ EY+MLDGVND HA QL +LLE +NLIPFNP + F TS+ +++ +F+
Sbjct: 256 KVTWEYVMLDGVNDSIAHAKQLIRLLEGVPSKLNLIPFNPFAG-NDFGTSTPERIEAFRV 314
Query: 324 ILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDK 357
L + I RK G +IS ACGQLV + D+
Sbjct: 315 RLTRA-GIFAMTRKTRGDEISAACGQLVGRVEDR 347
>gi|294790917|ref|ZP_06756075.1| radical SAM enzyme, Cfr family [Scardovia inopinata F0304]
gi|294458814|gb|EFG27167.1| radical SAM enzyme, Cfr family [Scardovia inopinata F0304]
Length = 424
Score = 212 bits (539), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 130/366 (35%), Positives = 197/366 (53%), Gaps = 32/366 (8%)
Query: 16 AEFEKAGIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHSVVDSS 75
A K G + + ++ + N E + P ++ + F P + ++
Sbjct: 66 AAMAKLGYPSFRVKQLGQHYFAHYNREVSSYSDFPQQQAQVVENTFFPSLIRPLAEQEAD 125
Query: 76 DDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCA 135
T K L L +G +E+V+M+Y + R+TLCISSQVGC MGC FCA
Sbjct: 126 QGTTVKTLWGLFDGSRIESVLMKYPT--------------RTTLCISSQVGCGMGCPFCA 171
Query: 136 TGTMGFKSNLSSGEIVEQLVHASRL---------SNIRNVVFMGMGEPLNNYAALVEAVR 186
TG +G N+S+GEI+EQ+ +A+R S + NVVFMGMGE L NY A+++A+R
Sbjct: 172 TGKLGLTRNMSAGEILEQVRYAARQARDGRLGQPSRLSNVVFMGMGEALGNYKAMMKAIR 231
Query: 187 IMTGLP---FQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAAR 243
++ LP F +S + ITVSTVGIV I + ++ + LAVSLHAP +R +++P +
Sbjct: 232 QISALPPDGFGISARNITVSTVGIVPGIRRLMTEGIPVRLAVSLHAPSDSLRDELVPMNK 291
Query: 244 AFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETF---QVVVNLIP 300
F + ++++A +Y +++++ IEY ++ G+ND+ QHA L K L + V VN IP
Sbjct: 292 RFAISQVLDAAHDYYVATKRRVSIEYALMKGINDQAQHARLLAKRLNHYGDDWVHVNPIP 351
Query: 301 FNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVV-NLPDKIS 359
NPI S++ S + F IL + I T+R G DI GACGQL L +
Sbjct: 352 LNPIEG-SRWTASKPEDEKRFLDILHQA-GIAATLRDTRGSDIDGACGQLAAKELIRQDQ 409
Query: 360 AKSTPP 365
+S PP
Sbjct: 410 TESDPP 415
>gi|222099877|ref|YP_002534445.1| ribosomal RNA large subunit methyltransferase N [Thermotoga
neapolitana DSM 4359]
gi|254807220|sp|B9K7Z6.1|RLMN_THENN RecName: Full=Probable dual-specificity RNA methyltransferase RlmN;
AltName: Full=23S rRNA
(adenine(2503)-C(2))-methyltransferase; AltName:
Full=23S rRNA m2A2503 methyltransferase; AltName:
Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=tRNA (adenine(37)-C(2))-methyltransferase;
AltName: Full=tRNA m2A37 methyltransferase
gi|221572267|gb|ACM23079.1| Radical SAM enzyme, Cfr family [Thermotoga neapolitana DSM 4359]
Length = 343
Score = 211 bits (538), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 128/349 (36%), Positives = 200/349 (57%), Gaps = 24/349 (6%)
Query: 16 AEFEKAGIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKFK-PLTSTLHSVVDS 74
+E G++++ I +V + +DE +L +LL+ F P L V S
Sbjct: 14 SEITSLGLERYRADQILDWVFDKKVNNFDEMTNLSKQHRALLKEHFTIPFLKLLEKRV-S 72
Query: 75 SDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFC 134
D TTK L +L++G +E+V++ + PG R T CIS+QVGC +GC FC
Sbjct: 73 KIDGTTKFLWELEDGNTIESVMIFH------------PG--RITACISTQVGCPVGCTFC 118
Query: 135 ATGTMGFKSNLSSGEIVEQLVHASRLS--NIRNVVFMGMGEPLNNYAALVEAVRIMTGLP 192
ATG GF NL++GEIV Q++ + I NVV+MGMGEPL NY ++++RI+
Sbjct: 119 ATGMSGFVRNLTTGEIVSQILSMEKEEGKKIGNVVYMGMGEPLLNYENTIKSIRILNHKK 178
Query: 193 F-QVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLM 251
+ +RIT+STVGI I + + + LA+SLHAP R Q++P R + +E+++
Sbjct: 179 MGNIGIRRITISTVGIPEKIIQLADEGLDVKLALSLHAPTNFKRDQLVPLNRKYSVEEIL 238
Query: 252 NALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFR 311
NA+K YQ + +++ IEY+++ GVNDE A +L ++L+ +V VNLIP NP +V+
Sbjct: 239 NAIKVYQMKTGKRVTIEYVLIRGVNDEISDAKKLAEILKGLKVFVNLIPVNP--TVAGLS 296
Query: 312 TSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDKISA 360
S ++ +F++IL + I +R++ G DI ACGQL L K+S+
Sbjct: 297 KPSRQRILAFKRILLEN-GIEAEIRQEKGSDIEAACGQL--RLKRKVSS 342
>gi|317495216|ref|ZP_07953586.1| cfr family radical SAM enzyme [Gemella morbillorum M424]
gi|316914638|gb|EFV36114.1| cfr family radical SAM enzyme [Gemella morbillorum M424]
Length = 377
Score = 211 bits (538), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 118/336 (35%), Positives = 196/336 (58%), Gaps = 25/336 (7%)
Query: 22 GIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHSVV-DSSDDVTT 80
G K+ I+ ++ + + E ++P + L +F+ +TL++++ S D T
Sbjct: 39 GEKKFRAKQIYDWLYKKRITSFTEMKNVPKSLQEKLAEEFE--ITTLNTIIKQESIDGTM 96
Query: 81 KLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMG 140
K L +LQ+ +E+V+M+ KY ++LC+++QVGC++GC FCA+ G
Sbjct: 97 KFLFELQDKYTIESVLMK-----NKYG---------NSLCVTTQVGCRIGCTFCASTLGG 142
Query: 141 FKSNLSSGEIVEQLVHA-----SRLSNIRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQ 194
K NL +GEIV Q++ R I ++V MG+GEP NY +++ ++I+ + F
Sbjct: 143 LKRNLEAGEIVSQVLKVQQELDKRGERISSIVIMGIGEPFENYDEMMDFIKIVNSDESFN 202
Query: 195 VSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNAL 254
+ + ITVST GIV I F ++ +N AVSLHAP ++R +IMP RA+ ++KLM AL
Sbjct: 203 IGARHITVSTSGIVPKIYDFANEKIQINFAVSLHAPTNELRSKIMPVNRAYNIDKLMEAL 262
Query: 255 KEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSS 314
K YQK + ++I EY ++ VND+ +HA +L ++++ VNLIP N + + RTS
Sbjct: 263 KYYQKTTNRRITFEYGLMGKVNDQREHAEKLSEIIKDLNCHVNLIPINYVPERNYVRTSK 322
Query: 315 DDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 350
+D + +F+K+L+ + + T+R+ G DI ACGQL
Sbjct: 323 ND-IFAFEKVLKKN-RVNVTIRRTQGDDIDAACGQL 356
>gi|298529502|ref|ZP_07016905.1| radical SAM enzyme, Cfr family [Desulfonatronospira thiodismutans
ASO3-1]
gi|298510938|gb|EFI34841.1| radical SAM enzyme, Cfr family [Desulfonatronospira thiodismutans
ASO3-1]
Length = 332
Score = 211 bits (538), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 126/335 (37%), Positives = 193/335 (57%), Gaps = 33/335 (9%)
Query: 31 IWKYVIENPNCEWDEFPSLPSAAYSLLRSKF---KPLTSTLHSVVDSSDDVTTKLLVKLQ 87
+W+++ + ++ E ++ A S L+ +F +P +D T KLL+ L
Sbjct: 18 LWQWIWQKKAGDFQEMTNISKALRSSLQQEFVLQRPAVVQKKESIDG----TVKLLLGLN 73
Query: 88 NGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSS 147
+G F+E VI+ P T CIS+QVGC MGC FC+TG MGFK NL+
Sbjct: 74 DGFFIETVII--------------PEKDYYTQCISTQVGCPMGCVFCSTGCMGFKRNLTP 119
Query: 148 GEIVEQLVHASR------LSNIR--NVVFMGMGEPLNNYAALVEAVRIMT-GLPFQVSPK 198
GEI Q++ A R L + R NVV MGMGEPL N+ A+ +A+ +MT L +S +
Sbjct: 120 GEIASQVLVACRHLEDTGLDSTRLTNVVLMGMGEPLLNWDAVKKAMYMMTDSLGLGISRR 179
Query: 199 RITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQ 258
R+T+STVG+ + +F S G+ LAVSLHAP QD+R ++MP A + ++ L+ AL++Y
Sbjct: 180 RLTLSTVGVRDRLQEFGSSRLGM-LAVSLHAPDQDLRRRLMPGAATWDIKDLVRALEQYP 238
Query: 259 KNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKV 318
+++I IEY++L +ND A L +LL + VNL+ +NP G ++ + +
Sbjct: 239 LAPRERITIEYVLLKDINDSPAQARALVRLLSRVKCKVNLLAYNP-GEQEGYQPPQEKTI 297
Query: 319 SSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVN 353
+F+++LR S + T+RK GQDIS ACGQL+ +
Sbjct: 298 LTFEEVLR-SKGLTVTLRKSKGQDISAACGQLIAD 331
>gi|407695029|ref|YP_006819817.1| ribosomal RNA large subunit methyltransferase N [Alcanivorax
dieselolei B5]
gi|407252367|gb|AFT69474.1| Ribosomal RNA large subunit methyltransferase N [Alcanivorax
dieselolei B5]
Length = 380
Score = 211 bits (538), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 138/362 (38%), Positives = 190/362 (52%), Gaps = 41/362 (11%)
Query: 14 IRAEFEKAGIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTS-----TL 68
+ A F + G K+ + K++ + +D+ + A LR K + L
Sbjct: 17 MEAFFLEMGEKKFRAQQVMKWIHHHQADHFDQMTDVGKA----LRQKLTEVAEIRGPKVL 72
Query: 69 HSVVDSSDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCK 128
H + S D T K + + GG VE V + P G R TLC+SSQVGC
Sbjct: 73 HEGI--SRDGTRKWVFEADGGGAVETVFI--------------PDGRRGTLCVSSQVGCA 116
Query: 129 MGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN---------IRNVVFMGMGEPLNNYA 179
+ C FC+TG GF+ +L+S EI+ Q+ A R I NVV MGMGEP+ NY
Sbjct: 117 VDCGFCSTGKQGFQRDLTSAEIIGQVWQAGRAFGPRRNLGEHPITNVVMMGMGEPMLNYD 176
Query: 180 ALVEAVRIMT-GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQI 238
A++ A+RIM L + + KRIT+ST G+V I++ DL + LAVSLHAP ++R ++
Sbjct: 177 AVLTAMRIMKDDLGYGIGKKRITLSTSGVVPKIDQLSRDLD-VALAVSLHAPNDELRNEL 235
Query: 239 MPAARAFPLEKLMNALKEYQKNSQQK---IFIEYIMLDGVNDEEQHAHQLGKLLETFQVV 295
+P R +PL +LM A K Y N + I +EY+ML VND+ +HA QL KLL V
Sbjct: 236 VPLNRKYPLAELMAACKRYSDNITHRHNTITMEYVMLRDVNDKPEHARQLVKLLNGIPVK 295
Query: 296 VNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLP 355
VNLIPFNP R+ D + F K L + + TTVR G DI ACGQLV +
Sbjct: 296 VNLIPFNPFPHAGYERSRKKD-ILEFHKFL-NDHGLLTTVRTTRGDDIDAACGQLVGTVQ 353
Query: 356 DK 357
D+
Sbjct: 354 DR 355
>gi|261856771|ref|YP_003264054.1| Cfr family radical SAM protein [Halothiobacillus neapolitanus c2]
gi|261837240|gb|ACX97007.1| radical SAM enzyme, Cfr family [Halothiobacillus neapolitanus c2]
Length = 392
Score = 211 bits (538), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 135/329 (41%), Positives = 182/329 (55%), Gaps = 33/329 (10%)
Query: 44 DEFPSLPSAAYSLLRSKFKPLTSTLHSVV---DSSDDVTTKLLVKLQNGGFVEAVIMRYD 100
D F + A SL R K + L + S D T K L++L GG VE V +
Sbjct: 60 DSFDDMTDLAKSL-RDKLRDLACIRAPAIRLDQQSSDGTRKFLLELDGGGSVEMVYI--- 115
Query: 101 SSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRL 160
P R+TLCISSQVGC + C FC+TG GF NL++ EIV QL A R+
Sbjct: 116 -----------PEDDRATLCISSQVGCSLACTFCSTGRQGFNRNLTTAEIVGQLWLAERM 164
Query: 161 SN--------IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAI 211
+ I NVVFMGMGEPL N+ ++V+A IM + +S +R+T+ST GI+ AI
Sbjct: 165 IDRAVNHNRAISNVVFMGMGEPLLNFESVVDAATIMLDDNAYGLSRRRVTISTSGIIPAI 224
Query: 212 NKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQK-NSQQKIFIEYI 270
++ LP + LA+SLHAP +R ++P + +PL+ LM A Y K I EY+
Sbjct: 225 DRLAERLP-VALAISLHAPNDALRDVLVPINQKYPLDDLMAACDRYAKVVPHGAIIYEYV 283
Query: 271 MLDGVNDEEQHAHQLGKLLETFQ--VVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGS 328
ML+GVNDE HA ++ +LL + V VNLIPFNP S S ++ SS +++ F+ L+ +
Sbjct: 284 MLEGVNDEPVHAEEMIRLLAPRKDAVKVNLIPFNPFPS-SGYKRSSRNRIERFRATLKAA 342
Query: 329 YNIRTTVRKQMGQDISGACGQLVVNLPDK 357
I T RK G DI ACGQLV DK
Sbjct: 343 -GINTVPRKTRGDDIDAACGQLVGEFEDK 370
>gi|303326495|ref|ZP_07356938.1| radical SAM enzyme, Cfr family [Desulfovibrio sp. 3_1_syn3]
gi|302864411|gb|EFL87342.1| radical SAM enzyme, Cfr family [Desulfovibrio sp. 3_1_syn3]
Length = 353
Score = 211 bits (538), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 129/332 (38%), Positives = 193/332 (58%), Gaps = 28/332 (8%)
Query: 31 IWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHSVVDSSDDVTTKLLVKLQNGG 90
+W+++ + ++D ++ A + L + + V +SSD TTK L++L++G
Sbjct: 30 VWQWIWQKMARDFDAMSNVSKACRARLAETARIDWPEVARVQESSDG-TTKFLLRLEDGA 88
Query: 91 FVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEI 150
VE V++ DS R G R T C+SSQVGC MGC FCATG MGF+ N++ GEI
Sbjct: 89 LVETVLIPSDS---------REGVRRWTQCLSSQVGCAMGCTFCATGDMGFERNMTMGEI 139
Query: 151 VEQ-LVHASRLSN-------IRNVVFMGMGEPLNNYAALVEAVRIMT---GLPFQVSPKR 199
+ Q LV L + +RN+VFMGMGEPL N ++ A++ + GL F SP+R
Sbjct: 140 LGQILVAREHLGDNRPDWPVLRNLVFMGMGEPLLNLREVMRALQSLNNDKGLNF--SPRR 197
Query: 200 ITVSTVGIVHAINKFHSDLPGLN-LAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQ 258
ITVST GI + + + GL LAVSLHAP Q++R +IMP A +PL++L+ ALK Y
Sbjct: 198 ITVSTCGIEKGLAELGAS--GLAYLAVSLHAPTQELRARIMPKAARWPLDQLLAALKSYP 255
Query: 259 KNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKV 318
++++I EY++L G+ND A +L +L+ + +NLI +NP + + + +V
Sbjct: 256 LKTRERITFEYLLLGGINDGPGQAGELARLVADIKGKLNLIVYNP-AEGAPYAAPDEARV 314
Query: 319 SSFQKILRGSYNIRTTVRKQMGQDISGACGQL 350
+F++ L +I VRK GQDI ACGQL
Sbjct: 315 LAFEQCL-WKRHITAIVRKSKGQDIKAACGQL 345
>gi|297621155|ref|YP_003709292.1| Radical SAM superfamily protein [Waddlia chondrophila WSU 86-1044]
gi|297376456|gb|ADI38286.1| Radical SAM superfamily protein [Waddlia chondrophila WSU 86-1044]
gi|337293379|emb|CCB91368.1| Ribosomal RNA large subunit methyltransferase N [Waddlia
chondrophila 2032/99]
Length = 362
Score = 211 bits (538), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 133/361 (36%), Positives = 200/361 (55%), Gaps = 28/361 (7%)
Query: 7 SVFDGGIIRAEFEKA----GIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKFK 62
S FD + R E++K G+ + I +++ E + +F +L A L S+FK
Sbjct: 3 SAFD--LSREEWQKWAETNGLPRFVSSQILQWIYEKGVVDPAQFSNLSLKARKFLASQFK 60
Query: 63 PLTSTLHSVVDSSDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCIS 122
+HS + S D + K L++ + E V+M Y+S R TLCIS
Sbjct: 61 WELPAIHSHLVSVDQ-SEKFLLRTSDHQLFEMVLMPYES--------------RITLCIS 105
Query: 123 SQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN---IRNVVFMGMGEPLNNYA 179
SQVGC++GC FC TG +G + NL+SGEI+ Q++ A++ N I N+VFMGMGEPL+NY
Sbjct: 106 SQVGCRIGCTFCQTGKLGLQRNLTSGEILSQILLANQSMNGKKITNIVFMGMGEPLDNYD 165
Query: 180 ALVEAVRIMTG-LPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQI 238
+++A R+M +S R+TVST G+V I K DLP + LA+SLH + R ++
Sbjct: 166 EVLKACRLMVDPKAIGLSMHRVTVSTSGLVPYIEKLGQDLP-VRLAISLHQADDEKRSRM 224
Query: 239 MPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNL 298
MP R +PL +L AL++Y + I EY+M++G ND + A +L K + + VNL
Sbjct: 225 MPVNRRYPLSELKKALQQYPAPKRYGITFEYVMIEGENDRIEDAKKLVKFVSGLKAKVNL 284
Query: 299 IPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDKI 358
IP N + + + S+ D++ SFQ L +I VR GQDISG CGQL +++
Sbjct: 285 IPINHFPGL-EMKASAADRLKSFQSYL-AERSIPAPVRYSRGQDISGGCGQLAAKTQEEL 342
Query: 359 S 359
+
Sbjct: 343 N 343
>gi|402814305|ref|ZP_10863899.1| ribosomal RNA large subunit methyltransferase N [Paenibacillus
alvei DSM 29]
gi|402508152|gb|EJW18673.1| ribosomal RNA large subunit methyltransferase N [Paenibacillus
alvei DSM 29]
Length = 360
Score = 211 bits (538), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 118/347 (34%), Positives = 197/347 (56%), Gaps = 28/347 (8%)
Query: 16 AEFEKAGIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHSVVDSS 75
A E+ G K+ +W Y+ ++ + + + +LL F T + H V S
Sbjct: 16 AWLEERGHKKSRASQVWDYLYRKRVKDFADMAEVNEDSAALLSEHFVIHTLSEH-VKQQS 74
Query: 76 DDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCA 135
D T K L KLQ+G +E V+M++ L ++C+++QVGC +GC+FCA
Sbjct: 75 ADGTIKFLFKLQDGNLIETVLMKHKFGL--------------SVCVTTQVGCNIGCSFCA 120
Query: 136 TGTMGFKSNLSSGEIVEQLV----HASRLSN---IRNVVFMGMGEPLNNYAALVEAVRIM 188
+G + +LSSGEIVEQ++ H + + ++V MG+GEP +N+ ++ +R++
Sbjct: 121 SGLLAKSRDLSSGEIVEQIMKVQHHLDEMGQGDLVSHIVVMGIGEPFDNFENIINFLRVV 180
Query: 189 TGLP-FQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPL 247
T + +RITVST G+ + I F +NLA+SLHAP ++R +IM RA P+
Sbjct: 181 TDHKGLAIGARRITVSTSGLANKIKDFADINLRVNLALSLHAPNDELRTRIMKINRAIPI 240
Query: 248 EKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETF----QVVVNLIPFNP 303
K+M A++ + + Q++ +EYI+L VND+++HA +L KL++ + +V VNLIP+NP
Sbjct: 241 AKVMEAIQYFINTTNQRVTLEYILLRDVNDQQEHALELVKLIQEWNMQDEVNVNLIPYNP 300
Query: 304 IGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 350
+ SQ++ S + + F +++ + NI +VR + G DI ACGQL
Sbjct: 301 VDEHSQYQRSEQESIRGFYDVMKKN-NISCSVRLEHGTDIDAACGQL 346
>gi|329767014|ref|ZP_08258542.1| ribosomal RNA large subunit methyltransferase N [Gemella
haemolysans M341]
gi|328837739|gb|EGF87364.1| ribosomal RNA large subunit methyltransferase N [Gemella
haemolysans M341]
Length = 377
Score = 211 bits (538), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 118/336 (35%), Positives = 196/336 (58%), Gaps = 25/336 (7%)
Query: 22 GIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHSVV-DSSDDVTT 80
G K+ I+ ++ + ++ E ++P + L +F+ +TL +++ S D T
Sbjct: 39 GEKKFRAKQIYDWLYKKRVTDFSEMKNVPKSLQEKLAEEFE--ITTLKTIIKQESADGTM 96
Query: 81 KLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMG 140
K L +LQ+ +E+V+M+ KY ++LC+++QVGC++GC FCA+ G
Sbjct: 97 KFLFELQDKYTIESVLMK-----NKYG---------NSLCVTTQVGCRIGCTFCASTLGG 142
Query: 141 FKSNLSSGEIVEQLVHA-----SRLSNIRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQ 194
K NL +GEIV Q++ + I ++V MG+GEP NY +++ +RI+ + F
Sbjct: 143 LKRNLDAGEIVSQVLKVQQELDKKGERISSIVIMGIGEPFENYDEMMDFIRIVNSDESFN 202
Query: 195 VSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNAL 254
+ + ITVST GIV I F ++ +N AVSLHAP ++R +IMP RA+ ++KLM AL
Sbjct: 203 IGARHITVSTSGIVPKIYDFANEKVQINFAVSLHAPTNELRSKIMPVNRAYNIDKLMEAL 262
Query: 255 KEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSS 314
K YQ+ + ++I EY ++ VND+++HA +L ++++ VNLIP N + + RTS
Sbjct: 263 KYYQETTNRRITFEYGLMGKVNDQKEHAEKLSEIIKGLNCHVNLIPINYVPERNYVRTSK 322
Query: 315 DDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 350
D + +F+KIL+ + + T+R+ G DI ACGQL
Sbjct: 323 SD-IFAFEKILKKN-KVNVTIRRTQGDDIDAACGQL 356
>gi|317485889|ref|ZP_07944749.1| cfr family radical SAM enzyme [Bilophila wadsworthia 3_1_6]
gi|316922863|gb|EFV44089.1| cfr family radical SAM enzyme [Bilophila wadsworthia 3_1_6]
Length = 404
Score = 211 bits (537), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 130/335 (38%), Positives = 189/335 (56%), Gaps = 34/335 (10%)
Query: 31 IWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHS---VVDSSDDVTTKLLVKLQ 87
+W+++ + +D + LR+K + + V +S D T KLL++L+
Sbjct: 77 VWQWIWQKHATSFDAMTDVSKQ----LRAKLAEVAEIVLPEIVTVQTSSDGTEKLLLRLR 132
Query: 88 NGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSS 147
+G VE VI+ S G+ G R C+SSQ+GC MGC FC+TGTMGF N+++
Sbjct: 133 DGALVETVIL---PSTGQ------DGSVRIAQCVSSQIGCAMGCTFCSTGTMGFIRNMTA 183
Query: 148 GEIVEQ-LVHASRLSN-------IRNVVFMGMGEPLNNYAALVEAVRIMT---GLPFQVS 196
GEI+ Q LV RL + IRN+VFMGMGEPL N A+ ++ G+ F S
Sbjct: 184 GEILSQVLVARMRLGDNRIDHPIIRNLVFMGMGEPLLNLRETTRALEMLNHDKGMDF--S 241
Query: 197 PKRITVSTVGIVHAINKFHSDLPGLN-LAVSLHAPVQDVRCQIMPAARAFPLEKLMNALK 255
P+RITVST GI + + GL LAVSLHAP QD+R +IMP A + L+ LM L+
Sbjct: 242 PRRITVSTCGIKAGLRELGDS--GLAFLAVSLHAPNQDLRAKIMPKAANWHLDDLMATLE 299
Query: 256 EYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSD 315
Y +++ I EY++L GVND+ +HA +L KL+ + +NLI +NP ++ ++
Sbjct: 300 SYPLKTREHITFEYLLLGGVNDQPEHARELAKLVSRVKGKLNLIAYNP-SETQLYKAPTE 358
Query: 316 DKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 350
+ +F+KIL S + +RK GQDI ACGQL
Sbjct: 359 ADILAFEKIL-WSKGVTAILRKSKGQDIKAACGQL 392
>gi|296454242|ref|YP_003661385.1| Cfr family radical SAM enzyme [Bifidobacterium longum subsp. longum
JDM301]
gi|296183673|gb|ADH00555.1| radical SAM enzyme, Cfr family [Bifidobacterium longum subsp.
longum JDM301]
Length = 389
Score = 211 bits (537), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 126/326 (38%), Positives = 185/326 (56%), Gaps = 36/326 (11%)
Query: 45 EFPSLPSAAYSLLRSKFKP--LTSTLHSVVDSSDDVTTKLLVKLQNGGFVEAVIMRYDSS 102
EF P+A S + F P +T V D + T K L KL +G +E+V+MRY +
Sbjct: 79 EFTDFPAAKRSEAAAAFFPQLITEVTRQVAD--EGTTIKTLWKLFDGSLIESVLMRYPT- 135
Query: 103 LGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRL-- 160
R+TLCISSQVGC MGC FCATG +G N+S+GEI+EQ+ A+++
Sbjct: 136 -------------RTTLCISSQVGCGMGCPFCATGKLGLTRNMSTGEIIEQVRVAAKMMR 182
Query: 161 --------SNIRNVVFMGMGEPLNNYAALVEAVRIMTGLP---FQVSPKRITVSTVGIVH 209
+ N+VFMGMGEP+ NY +++ AVR ++ +P F +S + ITVSTVG+V
Sbjct: 183 DGEVAGGEGRLSNIVFMGMGEPMGNYNSVLSAVRQISAMPPEGFGISARNITVSTVGVVP 242
Query: 210 AINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEY 269
I K ++ + LAVSLHAP ++R +++P + F ++++A +Y S++++ IEY
Sbjct: 243 GIKKLTAEGIPVRLAVSLHAPSDELRDELVPMNKRFNTTQVLDAAHDYWLASKRRVSIEY 302
Query: 270 IMLDGVNDEEQHAHQLGKLLETF---QVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILR 326
++ G+ND+ +HA L K L + VN IP NPI S++ S F +IL
Sbjct: 303 ALMRGINDQAEHAQLLAKRLNHYGDNWAHVNPIPLNPIEG-SKWTASKPGDEQRFLEILH 361
Query: 327 GSYNIRTTVRKQMGQDISGACGQLVV 352
+ I T+R GQDI GACGQL
Sbjct: 362 RA-GITATLRDTRGQDIDGACGQLAA 386
>gi|229817667|ref|ZP_04447949.1| hypothetical protein BIFANG_02938 [Bifidobacterium angulatum DSM
20098 = JCM 7096]
gi|229785456|gb|EEP21570.1| hypothetical protein BIFANG_02938 [Bifidobacterium angulatum DSM
20098 = JCM 7096]
Length = 395
Score = 211 bits (537), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 125/325 (38%), Positives = 180/325 (55%), Gaps = 36/325 (11%)
Query: 46 FPSLPSAAYSLLRSKFKP--LTSTLHSVVDSSDDVTTKLLVKLQNGGFVEAVIMRYDSSL 103
F P++ S F P +T V D T K L +L +G +E+V+MRY +
Sbjct: 86 FTDFPASKRDEAASVFFPELITEVTRQVADKG--TTIKTLWRLFDGSHIESVLMRYPT-- 141
Query: 104 GKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRL--- 160
RSTLCISSQVGC MGC FCATG +G N+S+GEI+EQ+ A+R+
Sbjct: 142 ------------RSTLCISSQVGCGMGCPFCATGQLGLTRNMSAGEILEQVRVAARMMQD 189
Query: 161 -------SNIRNVVFMGMGEPLNNYAALVEAVRIMTGLP---FQVSPKRITVSTVGIVHA 210
+ N+VFMGMGEP+ NY +++ AVR ++ LP F +S + ITVSTVG+V
Sbjct: 190 GEVAGGPGRLSNIVFMGMGEPMGNYRSVLSAVRQISALPPQGFGISARNITVSTVGVVPG 249
Query: 211 INKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYI 270
I K + + LAVSLHAP ++R +++P + F +++A +Y +++++ IEY
Sbjct: 250 IRKLTEEGIPVRLAVSLHAPSDELRDELVPMNKRFNTTAVLDAAHDYWLATKRRVSIEYA 309
Query: 271 MLDGVNDEEQHAHQLGKLLETF---QVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRG 327
++ G+ND+ +HA L K L + VN IP NPI S++ S + F IL
Sbjct: 310 LMRGINDQAEHARLLAKRLNHYGDDWAHVNPIPLNPIEG-SKWTASKPEDEKRFLDILHA 368
Query: 328 SYNIRTTVRKQMGQDISGACGQLVV 352
+ I T+R GQDI GACGQL
Sbjct: 369 A-GITATLRDTRGQDIDGACGQLAA 392
>gi|171742890|ref|ZP_02918697.1| hypothetical protein BIFDEN_02007 [Bifidobacterium dentium ATCC
27678]
gi|171278504|gb|EDT46165.1| 23S rRNA m2A2503 methyltransferase [Bifidobacterium dentium ATCC
27678]
Length = 393
Score = 211 bits (537), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 125/355 (35%), Positives = 196/355 (55%), Gaps = 36/355 (10%)
Query: 16 AEFEKAGIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKP--LTSTLHSVVD 73
A+ ++ G+ + + + + + + + +EF P+ + F P +T V D
Sbjct: 53 AKAKELGLPRFRVKQLANHYYGHFDVDAEEFSDFPANKRAEAAEAFFPTLITEVTRQVAD 112
Query: 74 SSDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNF 133
+ T K L +L +G +E+V+MRY + R+TLCISSQVGC MGC F
Sbjct: 113 --EGTTIKTLWRLFDGSLIESVLMRYPT--------------RTTLCISSQVGCGMGCPF 156
Query: 134 CATGTMGFKSNLSSGEIVEQLVHASRL----------SNIRNVVFMGMGEPLNNYAALVE 183
CATG +G N+S+GEIVEQ+ A++ + N+VFMGMGEP+ NY +++
Sbjct: 157 CATGKLGLTRNMSAGEIVEQVRVAAKAMRDGEVAGGPGRLSNIVFMGMGEPMGNYRSVLS 216
Query: 184 AVRIMTGLP---FQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMP 240
AVR ++ +P F +S + ITVSTVG+V I K ++ + LAVSLHAP ++R +++P
Sbjct: 217 AVRQISAMPPEGFGISARNITVSTVGVVPGIKKLTAEGIPVRLAVSLHAPSDELRDELVP 276
Query: 241 AARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETF---QVVVN 297
+ F ++++A +Y S++++ IEY ++ G+ND+ +HA L K L + VN
Sbjct: 277 MNKRFDTTQVLDAAHDYYLASKRRVSIEYALMRGINDQAEHARLLAKRLNHYGDNWAHVN 336
Query: 298 LIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVV 352
IP NPI S++ S + F IL + + T+R GQDI GACGQL
Sbjct: 337 PIPLNPIEG-SKWTASKPEDERRFLDILHQA-GVTATLRDTRGQDIDGACGQLAA 389
>gi|115379954|ref|ZP_01467009.1| radical SAM enzyme, Cfr family [Stigmatella aurantiaca DW4/3-1]
gi|115363034|gb|EAU62214.1| radical SAM enzyme, Cfr family [Stigmatella aurantiaca DW4/3-1]
Length = 384
Score = 211 bits (536), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 117/294 (39%), Positives = 170/294 (57%), Gaps = 26/294 (8%)
Query: 65 TSTLHSVVDSSDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQ 124
+ T+H SSD T KLL++ +G +E V+MR+ R+T+C+S+Q
Sbjct: 96 SPTVHHETFSSDGHTHKLLLRQHDGQTIETVLMRFKG--------------RATVCVSTQ 141
Query: 125 VGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRL-----SNIRNVVFMGMGEPLNNYA 179
GC MGC FCATG MG +LS GEIV Q++H L +RN+V MGMGEPL+NY
Sbjct: 142 AGCAMGCVFCATGQMGLARHLSPGEIVAQVLHVVGLLRQTGETLRNIVLMGMGEPLHNYD 201
Query: 180 ALVEAVRIMT---GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRC 236
A +EAV I+ GL + P+ IT+STVG+V I + + + LAVSLH R
Sbjct: 202 ATLEAVDILVDPRGL--AIGPRFITLSTVGVVPGIRRLADEDRPVQLAVSLHGATDAERA 259
Query: 237 QIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVV 296
++P + +PL +LM+A + Y + ++IF E+ ++ G ND AH LG+LL+ + V
Sbjct: 260 ALVPVGKRWPLNELMDACRYYSEKRGRRIFFEWTLIAGQNDTVDQAHTLGQLLKGMEAHV 319
Query: 297 NLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 350
N+IP NP S+ + V +FQ++L SY + +TVR++ G DI CGQL
Sbjct: 320 NVIPLNPTVGFGGT-PSTPEAVRAFQQVLT-SYGLPSTVRQRRGIDIDAGCGQL 371
>gi|373496938|ref|ZP_09587481.1| ribosomal RNA large subunit methyltransferase N [Fusobacterium sp.
12_1B]
gi|404366950|ref|ZP_10972326.1| ribosomal RNA large subunit methyltransferase N [Fusobacterium
ulcerans ATCC 49185]
gi|313689832|gb|EFS26667.1| ribosomal RNA large subunit methyltransferase N [Fusobacterium
ulcerans ATCC 49185]
gi|371964597|gb|EHO82110.1| ribosomal RNA large subunit methyltransferase N [Fusobacterium sp.
12_1B]
Length = 350
Score = 211 bits (536), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 125/343 (36%), Positives = 189/343 (55%), Gaps = 22/343 (6%)
Query: 22 GIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSK-FKPLTSTLHSVVDSSDDVTT 80
G+K+ + I+ ++ + + +E +L LL K + P + L V S D T
Sbjct: 23 GMKKFYGKQIFNWLHQKIVRDLNEITNLSLKDRELLSEKAYIPFLNLLKQQV-SKIDKTE 81
Query: 81 KLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMG 140
K L KL++G +E V++R+ R+TLCISSQVGC + C FCATG G
Sbjct: 82 KFLFKLEDGNTIETVLLRHKDK-------------RNTLCISSQVGCPVKCAFCATGQDG 128
Query: 141 FKSNLSSGEIVEQLVHASRL-----SNIRNVVFMGMGEPLNNYAALVEAVRIMTGLP-FQ 194
F NL EI+ Q+ R SNI N+VFMGMGEPL N + +++A+ I++
Sbjct: 129 FVRNLDVNEIINQVYTVERRLTKQGSNINNIVFMGMGEPLLNLSNVLKALDILSNENGIN 188
Query: 195 VSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNAL 254
+S ++IT+ST GIV I K + + LA+SLH+ + R I+P R++PLE L L
Sbjct: 189 ISKRKITISTSGIVPNIEKILLEKLPIELAISLHSAINAKRDMIIPVNRSYPLEDLYAIL 248
Query: 255 KEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSS 314
+EYQ+ ++++I EYIM++ N + A+ L + F VVNLIP+NP+ ++F S
Sbjct: 249 QEYQRQTKRRISFEYIMINDFNVSDIDANALADFVHEFDHVVNLIPYNPVAG-TEFERPS 307
Query: 315 DDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDK 357
+ K+ F L+ + T+R++ G DI GACGQL P K
Sbjct: 308 EKKIEKFFTFLKDVRKVNVTLRREKGTDIDGACGQLRQKAPKK 350
>gi|154250366|ref|YP_001411191.1| ribosomal RNA large subunit methyltransferase N [Fervidobacterium
nodosum Rt17-B1]
gi|205829758|sp|A7HNQ1.1|RLMN_FERNB RecName: Full=Probable dual-specificity RNA methyltransferase RlmN;
AltName: Full=23S rRNA
(adenine(2503)-C(2))-methyltransferase; AltName:
Full=23S rRNA m2A2503 methyltransferase; AltName:
Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=tRNA (adenine(37)-C(2))-methyltransferase;
AltName: Full=tRNA m2A37 methyltransferase
gi|154154302|gb|ABS61534.1| radical SAM enzyme, Cfr family [Fervidobacterium nodosum Rt17-B1]
Length = 348
Score = 211 bits (536), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 122/355 (34%), Positives = 194/355 (54%), Gaps = 26/355 (7%)
Query: 1 MTYDYRSVFDGGIIRAEFEKAGIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSK 60
+ + Y + D EF K G+++ + +W ++ + ++D+ +L + L +
Sbjct: 6 LDFSYEELVD------EFSKIGLEKFRVDQVWDWIYKKHEFDFDKMTNLSKEHRNTLSER 59
Query: 61 FKPLTSTLHSVVDSSDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLC 120
F L + S D TTK L KL++ +E+V++ + R T C
Sbjct: 60 FYIYVPELLDMQISQIDKTTKFLWKLEDDNTIESVLLFHPD--------------RVTAC 105
Query: 121 ISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLV--HASRLSNIRNVVFMGMGEPLNNY 178
IS+QVGC C FCATG GF NLS+GEIV Q++ R NI N+V+MGMGEPL NY
Sbjct: 106 ISTQVGCPAKCAFCATGQSGFVRNLSAGEIVSQIIAMEKHRKVNIGNIVYMGMGEPLLNY 165
Query: 179 AALVEAVRIMTGLPFQ-VSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQ 237
+V++V+++ + +S +RI++STVGI I + DLP + LA+SLHAP R
Sbjct: 166 KEVVKSVKMLNHKKGKNISMRRISISTVGIPEKIVELAQDLPEVKLAISLHAPNNYKRDI 225
Query: 238 IMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVN 297
I+P + + +E+++ + KEYQK ++ ++ EYI++ ND A +L +LL+ VN
Sbjct: 226 IVPMNKKYSVEEIIQSAKEYQKITKNRVTFEYILIREFNDFVDDAEKLAELLKGMGAYVN 285
Query: 298 LIPFNPIGSVSQ--FRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 350
LIP NP+ S + F + F+++L +NI +R++ G DI ACGQL
Sbjct: 286 LIPVNPVPSSGELKFERPHHWAIERFKEVL-DKHNIENEIRREKGTDIDAACGQL 339
>gi|374849841|dbj|BAL52845.1| hypothetical conserved protein [uncultured gamma proteobacterium]
Length = 366
Score = 211 bits (536), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 136/353 (38%), Positives = 194/353 (54%), Gaps = 32/353 (9%)
Query: 18 FEKAGIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHSVV--DSS 75
F + G K + K+V E++ L A + L F TL VV S
Sbjct: 23 FARMGEKPFRARQVLKWVHGRGVTEFEAMTDLGKALRARLGEIF---NLTLPCVVGRQES 79
Query: 76 DDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCA 135
D T K L+ L +G +E V + P R TLC+SSQVGC +GC FCA
Sbjct: 80 RDGTVKWLMALADGNCIETVFI--------------PEERRGTLCVSSQVGCALGCAFCA 125
Query: 136 TGTMGFKSNLSSGEIVEQLVHASRLSNIR--NVVFMGMGEPLNNYAALVEAVRIMT-GLP 192
T GF NLS+ EI+ Q+ +A R + R NVV MGMGEPL N+ A+V+A +M L
Sbjct: 126 TARQGFSRNLSAAEIIGQVWYAFRQLDCRITNVVLMGMGEPLLNFDAVVDAAELMMDDLA 185
Query: 193 FQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMN 252
+ ++ +R+TVST G+ AI + +++ ++LAVSLHA ++R ++P R +PL++L+
Sbjct: 186 YGLAKRRVTVSTAGLAPAIERL-AEISDVSLAVSLHATTDELRDLLVPINRKYPLQRLLA 244
Query: 253 ALKEYQKNSQQ---KIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQ 309
A + + + +Q KI EY+ML GVND + A +L KLL +NLIPFNP +
Sbjct: 245 ACRRFAGSERQKGRKITFEYVMLQGVNDADADAKRLAKLLSQVPAKINLIPFNPFPG-AP 303
Query: 310 FRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDKISAKS 362
FR S + + FQ IL S TTVR+ G+DI+ ACGQLV K++A+S
Sbjct: 304 FRCSPPETILRFQSILADS-GFLTTVRRTRGEDIAAACGQLV----GKVAARS 351
>gi|212715800|ref|ZP_03323928.1| hypothetical protein BIFCAT_00701 [Bifidobacterium catenulatum DSM
16992 = JCM 1194]
gi|212661167|gb|EEB21742.1| hypothetical protein BIFCAT_00701 [Bifidobacterium catenulatum DSM
16992 = JCM 1194]
Length = 406
Score = 211 bits (536), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 126/331 (38%), Positives = 184/331 (55%), Gaps = 36/331 (10%)
Query: 44 DEFPSLPSAAYSLLRSKFKP--LTSTLHSVVDSSDDVTTKLLVKLQNGGFVEAVIMRYDS 101
+EF P+A F P +T V D + T K L +L +G +E+V+MRY +
Sbjct: 94 EEFSDFPAAKRVEAAEIFFPTLITEVTRQVAD--EGTTIKTLWRLFDGSLIESVLMRYPT 151
Query: 102 SLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRL- 160
R+TLCISSQVGC MGC FCATG +G N+S+GEIVEQ+ A++
Sbjct: 152 --------------RTTLCISSQVGCGMGCPFCATGQLGLTRNMSAGEIVEQVRVAAKAM 197
Query: 161 ---------SNIRNVVFMGMGEPLNNYAALVEAVRIMTGLP---FQVSPKRITVSTVGIV 208
+ N+VFMGMGEP+ NY +++ AVR ++ +P F +S + ITVSTVG+V
Sbjct: 198 RDGEVAGGPGRLSNIVFMGMGEPMGNYKSVLSAVRQISAMPPEGFGISARNITVSTVGVV 257
Query: 209 HAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIE 268
I K ++ + LAVSLHAP ++R +++P + F ++++A +Y S++++ IE
Sbjct: 258 PGIKKLMAEGIPVRLAVSLHAPNDELRDELVPMNKRFNTTQVLDAAHDYYLASKRRVSIE 317
Query: 269 YIMLDGVNDEEQHAHQLGKLLETF---QVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKIL 325
Y ++ G+ND+ +HA L K L + VN IP NPI S++ S + F IL
Sbjct: 318 YALMRGINDQAEHAKLLAKRLNHYGDNWAHVNPIPLNPIEG-SRWTASKPEDEQQFLDIL 376
Query: 326 RGSYNIRTTVRKQMGQDISGACGQLVVNLPD 356
+ I T+R GQDI GACGQL D
Sbjct: 377 HKA-GITATLRDTRGQDIDGACGQLAAKERD 406
>gi|229918582|ref|YP_002887228.1| ribosomal RNA large subunit methyltransferase N [Exiguobacterium
sp. AT1b]
gi|229470011|gb|ACQ71783.1| radical SAM enzyme, Cfr family [Exiguobacterium sp. AT1b]
Length = 361
Score = 211 bits (536), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 120/327 (36%), Positives = 185/327 (56%), Gaps = 29/327 (8%)
Query: 32 WKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHSVVDSSDDVTTKLLVKLQNGGF 91
W YV +D+ ++P A L + F+ LT+ V S D T K L +LQ+G
Sbjct: 46 WMYV--KRVTTFDDMTNVPKALRDKLEASFQ-LTTLKELVKQESQDGTIKFLFELQDGYS 102
Query: 92 VEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIV 151
+E V+MR++ +++C+++QVGC++GC FCA+ G K NL +GEI
Sbjct: 103 IETVLMRHEYG--------------NSICVTTQVGCRIGCTFCASTLGGLKRNLEAGEIT 148
Query: 152 EQLVHASRL-----SNIRNVVFMGMGEPLNNYAALVEAVRIMT---GLPFQVSPKRITVS 203
Q++ R + ++V MG+GEP +NY L+ +R + GL + + ITVS
Sbjct: 149 AQVLDVQRALDATGERVDSIVVMGIGEPFDNYDELMRFLRTVNHDNGL--NIGARHITVS 206
Query: 204 TVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQ 263
T GIV I KF + +N A+SLHAP ++R ++MP RAF L+KLM+A++ Y + S +
Sbjct: 207 TSGIVPKIYKFADEGMRINFAISLHAPTTELRTKLMPINRAFDLDKLMDAVRYYTEKSGR 266
Query: 264 KIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQK 323
+I EY + GVND E++AH L LL+ + VNLIP N + RT ++ +F+K
Sbjct: 267 RITFEYGLFGGVNDTEEYAHLLADLLKGIKCHVNLIPVNHVLERDYVRTPR-AQIFAFEK 325
Query: 324 ILRGSYNIRTTVRKQMGQDISGACGQL 350
+L+ N+ T+R++ G DI ACGQL
Sbjct: 326 VLKDR-NVNVTIRREQGSDIDAACGQL 351
>gi|121607087|ref|YP_994894.1| radical SAM protein [Verminephrobacter eiseniae EF01-2]
gi|205829923|sp|A1WE19.1|RLMN_VEREI RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|121551727|gb|ABM55876.1| radical SAM enzyme, Cfr family [Verminephrobacter eiseniae EF01-2]
Length = 391
Score = 211 bits (536), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 139/359 (38%), Positives = 197/359 (54%), Gaps = 38/359 (10%)
Query: 16 AEF-EKAGIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHSVV-- 72
A+F + G K+ +++++ + ++D L A LR K K V
Sbjct: 15 ADFCARLGEKRFRATQLFRWIHQRGASDFDAMSDLARA----LRDKLKGCARVQAPPVIS 70
Query: 73 -DSSDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGC 131
+S D + K L + G VEAV + P R TLC+SSQ GC +GC
Sbjct: 71 GQASADGSVKWLFDVGAGNAVEAVFI--------------PEDERGTLCVSSQAGCAVGC 116
Query: 132 NFCATGTMGFKSNLSSGEIVEQLVHAS-----RLSN----IRNVVFMGMGEPLNNYAALV 182
FC+TG GF NLSSGEI+ QL A RL I N+V MGMGEPL N AAL+
Sbjct: 117 RFCSTGHQGFSRNLSSGEIIAQLWFAEHALRRRLKTEDRVISNLVMMGMGEPLQNLAALL 176
Query: 183 EAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPA 241
A+R+M + +S +R+TVST G+V I++ D P + LAVSLHAP +R Q++P
Sbjct: 177 PALRVMLDDHGYGLSRRRVTVSTSGVVPMIDRLARDCP-VALAVSLHAPNDALRDQLVPL 235
Query: 242 ARAFPLEKLMNALKEYQKNSQQK-IFIEYIMLDGVNDEEQHAHQLGKLL--ETFQVVVNL 298
R +P+++L+ A K Y ++ + I EY MLDGVND+ HA QL +L+ + NL
Sbjct: 236 NRKYPIDELLQACKRYLAHAPRDFITFEYCMLDGVNDQIGHARQLVELVGRAAIRCKFNL 295
Query: 299 IPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDK 357
IPFNP + R S+ D++ +F ++L G+ I TTVRK G DI+ ACGQL ++ D+
Sbjct: 296 IPFNPFPASGLLR-SAHDQILAFAQVL-GAAGIVTTVRKTRGDDIAAACGQLAGDVRDR 352
>gi|268316491|ref|YP_003290210.1| radical SAM enzyme, Cfr family [Rhodothermus marinus DSM 4252]
gi|262334025|gb|ACY47822.1| radical SAM enzyme, Cfr family [Rhodothermus marinus DSM 4252]
Length = 364
Score = 211 bits (536), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 128/336 (38%), Positives = 191/336 (56%), Gaps = 27/336 (8%)
Query: 31 IWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHSVVD-SSDDVTTKLLVKLQNG 89
++K++ ++ LP A + L + + + L V ++ D T K+L +L +G
Sbjct: 34 LFKWIYGKGATSVEQMTDLPRAFRAELARRAR--ITRLEPVRQLTAGDQTVKVLFRLPSG 91
Query: 90 GFVEAVIM-RYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSG 148
VE+V++ +D G+ R T+C+SSQVGC MGC FCATG MGF+ NL++G
Sbjct: 92 RHVESVLIPDFDEETGRVR--------RLTVCVSSQVGCAMGCAFCATGLMGFQQNLTAG 143
Query: 149 EIVEQLVHASRLSNIR------NVVFMGMGEPLNNYAALVEAVRIMTGLP-FQVSPKRIT 201
EI +Q+ +RL+ R NVV+MGMGEPL NY A++ +V ++T +SP+RIT
Sbjct: 144 EIYDQVWQLNRLAEERFGRRITNVVYMGMGEPLLNYDAVLRSVALLTDRDGLGLSPRRIT 203
Query: 202 VSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAAR--AFPLEKLMNALKEYQK 259
VSTVG+ I + D LAVSLHAP R IMP R L+ L+ A++ ++
Sbjct: 204 VSTVGLARRIRQLADDGVRFRLAVSLHAPTNAQRSAIMPVNRNEQTDLDDLIEAIRYFEA 263
Query: 260 NSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVS 319
+ Q I EY + +G ND + AH+L L E VNLI +NP+ + FR S++++
Sbjct: 264 RTGQTITYEYCLFEGFNDRPEDAHRLADLTEQAPGKVNLILYNPVEGLP-FRRPSEERLQ 322
Query: 320 SFQKIL--RGSYNIRTTVRKQMGQDISGACGQLVVN 353
+F ++L RG + TVR+ GQDI+ ACGQL V
Sbjct: 323 AFIRVLVDRG---VTVTVRRSRGQDINAACGQLAVR 355
>gi|310819181|ref|YP_003951539.1| ribosomal RNA large subunit methyltransferase n [Stigmatella
aurantiaca DW4/3-1]
gi|309392253|gb|ADO69712.1| Ribosomal RNA large subunit methyltransferase N [Stigmatella
aurantiaca DW4/3-1]
Length = 360
Score = 211 bits (536), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 117/294 (39%), Positives = 170/294 (57%), Gaps = 26/294 (8%)
Query: 65 TSTLHSVVDSSDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQ 124
+ T+H SSD T KLL++ +G +E V+MR+ R+T+C+S+Q
Sbjct: 72 SPTVHHETFSSDGHTHKLLLRQHDGQTIETVLMRFKG--------------RATVCVSTQ 117
Query: 125 VGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRL-----SNIRNVVFMGMGEPLNNYA 179
GC MGC FCATG MG +LS GEIV Q++H L +RN+V MGMGEPL+NY
Sbjct: 118 AGCAMGCVFCATGQMGLARHLSPGEIVAQVLHVVGLLRQTGETLRNIVLMGMGEPLHNYD 177
Query: 180 ALVEAVRIMT---GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRC 236
A +EAV I+ GL + P+ IT+STVG+V I + + + LAVSLH R
Sbjct: 178 ATLEAVDILVDPRGL--AIGPRFITLSTVGVVPGIRRLADEDRPVQLAVSLHGATDAERA 235
Query: 237 QIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVV 296
++P + +PL +LM+A + Y + ++IF E+ ++ G ND AH LG+LL+ + V
Sbjct: 236 ALVPVGKRWPLNELMDACRYYSEKRGRRIFFEWTLIAGQNDTVDQAHTLGQLLKGMEAHV 295
Query: 297 NLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 350
N+IP NP S+ + V +FQ++L SY + +TVR++ G DI CGQL
Sbjct: 296 NVIPLNPTVGFGGT-PSTPEAVRAFQQVLT-SYGLPSTVRQRRGIDIDAGCGQL 347
>gi|241764492|ref|ZP_04762513.1| radical SAM enzyme, Cfr family [Acidovorax delafieldii 2AN]
gi|241366076|gb|EER60673.1| radical SAM enzyme, Cfr family [Acidovorax delafieldii 2AN]
Length = 373
Score = 210 bits (535), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 140/358 (39%), Positives = 197/358 (55%), Gaps = 40/358 (11%)
Query: 22 GIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKFK--PLTSTLHSVVDS-SDDV 78
G K+ +++++ + ++D L A LR+K K L + + S D
Sbjct: 21 GEKRFRATQLFRWIHQRGASDFDAMSDLAVA----LRTKLKGCAFVQALPVISEHVSADG 76
Query: 79 TTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGT 138
T K L + +G VE+V + P R TLC+SSQ GC +GC FC+TG
Sbjct: 77 TVKWLFDVGDGNAVESVFI--------------PEDDRGTLCVSSQAGCAVGCRFCSTGH 122
Query: 139 MGFKSNLSSGEIVEQLVHAS-----RLSN----IRNVVFMGMGEPLNNYAALVEAVRIM- 188
GF NL++GEIV QL A RL+ I NVV MGMGEPL NY ALV A+R+M
Sbjct: 123 QGFSRNLTTGEIVAQLWFAEHALRKRLATQSRVISNVVMMGMGEPLQNYTALVPALRVML 182
Query: 189 TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLE 248
+ +S +R+TVST G+V +++ D P + LAVSLHAP +R ++P R +PLE
Sbjct: 183 DDHGYGLSRRRVTVSTSGVVPMMDRLSQDCP-VALAVSLHAPNDALRDNLVPLNRKYPLE 241
Query: 249 KLMNALKEYQKNSQQK-IFIEYIMLDGVNDEEQHAHQLGKLLETFQVV-----VNLIPFN 302
+L++A + Y +++ + I EY MLDGVND+ +HA QL L+ Q V NLIPFN
Sbjct: 242 ELLDACRRYLEHAPRDFITFEYCMLDGVNDQVEHARQLIALVNPAQGVPIRCKFNLIPFN 301
Query: 303 PIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDKISA 360
P + R+ S +V+ F K+L + I TTVRK G DI ACGQL ++ D+ A
Sbjct: 302 PFPASGLLRSPS-AQVAMFAKVLSDA-GIVTTVRKTRGDDIDAACGQLAGDVKDRTRA 357
>gi|283456084|ref|YP_003360648.1| radical SAM family enzyme [Bifidobacterium dentium Bd1]
gi|283102718|gb|ADB09824.1| Radical SAM family enzyme [Bifidobacterium dentium Bd1]
Length = 389
Score = 210 bits (535), Expect = 8e-52, Method: Compositional matrix adjust.
Identities = 123/331 (37%), Positives = 185/331 (55%), Gaps = 36/331 (10%)
Query: 40 NCEWDEFPSLPSAAYSLLRSKFKP--LTSTLHSVVDSSDDVTTKLLVKLQNGGFVEAVIM 97
+ + +EF P+ + F P +T V D + T K L +L +G +E+V+M
Sbjct: 73 DVDAEEFSDFPANKRAEAAEAFFPTLITEVTRQVAD--EGTTIKTLWRLFDGSLIESVLM 130
Query: 98 RYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHA 157
RY + R+TLCISSQVGC MGC FCATG +G N+S+GEIVEQ+ A
Sbjct: 131 RYPT--------------RTTLCISSQVGCGMGCPFCATGKLGLTRNMSAGEIVEQVRVA 176
Query: 158 SRL----------SNIRNVVFMGMGEPLNNYAALVEAVRIMTGLP---FQVSPKRITVST 204
++ + N+VFMGMGEP+ NY +++ AVR ++ +P F +S + ITVST
Sbjct: 177 AKAMRDGEVAGGPGRLSNIVFMGMGEPMGNYRSVLSAVRQISAMPPEGFVISARNITVST 236
Query: 205 VGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQK 264
VG+V I K ++ + LAVSLHAP ++R +++P + F ++++A +Y S+++
Sbjct: 237 VGVVPGIKKLTAEGIPVRLAVSLHAPSDELRDELVPMNKRFDTTQVLDAAHDYYLASKRR 296
Query: 265 IFIEYIMLDGVNDEEQHAHQLGKLLETF---QVVVNLIPFNPIGSVSQFRTSSDDKVSSF 321
+ IEY ++ G+ND+ +HA L K L + VN IP NPI S++ S + F
Sbjct: 297 VSIEYALMRGINDQAEHARLLAKRLNHYGDNWAHVNPIPLNPIEG-SKWTASKPEDERRF 355
Query: 322 QKILRGSYNIRTTVRKQMGQDISGACGQLVV 352
IL + + T+R GQDI GACGQL
Sbjct: 356 LDILHQA-GVTATLRDTRGQDIDGACGQLAA 385
>gi|424864659|ref|ZP_18288562.1| radical SAM enzyme, Cfr family [SAR86 cluster bacterium SAR86B]
gi|400759405|gb|EJP73587.1| radical SAM enzyme, Cfr family [SAR86 cluster bacterium SAR86B]
Length = 360
Score = 210 bits (535), Expect = 8e-52, Method: Compositional matrix adjust.
Identities = 127/294 (43%), Positives = 172/294 (58%), Gaps = 24/294 (8%)
Query: 75 SDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFC 134
S D T K +KL +G VE V++ P R+TLCISSQ GC + C FC
Sbjct: 75 SKDGTEKFAIKLNSGSIVEMVVI--------------PEEKRNTLCISSQAGCALQCTFC 120
Query: 135 ATGTMGFKSNLSSGEIVEQLVHASRLSN----IRNVVFMGMGEPLNNYAALVEAVRIMTG 190
ATG GF SNL+S EI+ QL A+ S I NVVFMGMGEPL NY +VE+ +IM
Sbjct: 121 ATGAQGFDSNLTSSEIIGQLWLANNFSTNKRKITNVVFMGMGEPLLNYENVVESAQIMKD 180
Query: 191 L-PFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEK 249
+ +S KRIT+ST GIV I +D+ ++LA+SLHAP D+R +I+P +PL++
Sbjct: 181 QNAYGLSRKRITISTSGIVPQILNLPNDI-DVSLAISLHAPNDDLRNEIVPINNKYPLKE 239
Query: 250 LMNALKEYQKN--SQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSV 307
L+++ K Y K+ +++ I IEYI++ VND +HA +L K+L +NLIPFNP
Sbjct: 240 LISSCKTYLKSFTNKKNITIEYILIKEVNDSLEHAKELSKILNHLNCKINLIPFNPFDGC 299
Query: 308 SQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDKISAK 361
+ SSD +++F+ L I TVR+ G I GACGQLV NL K
Sbjct: 300 D-YERSSDQDINAFKSFLMKKGFI-ATVRRTRGDLIDGACGQLVGNLNKATKGK 351
>gi|407938377|ref|YP_006854018.1| radical SAM protein [Acidovorax sp. KKS102]
gi|407896171|gb|AFU45380.1| radical SAM protein [Acidovorax sp. KKS102]
Length = 370
Score = 210 bits (535), Expect = 8e-52, Method: Compositional matrix adjust.
Identities = 141/368 (38%), Positives = 200/368 (54%), Gaps = 37/368 (10%)
Query: 9 FDGGIIRAEFEKAGIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTL 68
FD + A E+ G K+ +++++ + ++D L A LR K K
Sbjct: 8 FDLDGLAAFCERLGEKRFRATQLFRWIHQRGASDFDAMSDLAKA----LRDKLKGCARVE 63
Query: 69 HSVVDS---SDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQV 125
V S S D T K L + +G VEAV + P R TLC+SSQ
Sbjct: 64 ALPVISEHVSSDGTVKWLFDVGDGNAVEAVFI--------------PEDDRGTLCVSSQA 109
Query: 126 GCKMGCNFCATGTMGFKSNLSSGEIVEQLVHAS-----RLSN----IRNVVFMGMGEPLN 176
GC +GC FC+TG GF NL++GEIV QL A RL I NVV MGMGEPL
Sbjct: 110 GCAVGCRFCSTGHQGFSRNLTTGEIVAQLWFAEHSLRKRLQTDERVISNVVMMGMGEPLQ 169
Query: 177 NYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVR 235
NY+ALV A+++M + +S +R+TVST G+V +++ D P + LAVSLHAP +R
Sbjct: 170 NYSALVPALKVMLDDHGYGLSRRRVTVSTSGVVPMMDRLSQDCP-VALAVSLHAPNDPLR 228
Query: 236 CQIMPAARAFPLEKLMNALKEYQKNSQQK-IFIEYIMLDGVNDEEQHAHQLGKLLET--F 292
++P R +P+ +L++A Y +++ + I EY MLDGVND+ +HA QL +L++
Sbjct: 229 DNLVPLNRKYPISELLDACNRYLQHAPRDFITFEYCMLDGVNDQVEHARQLIELVKRTGI 288
Query: 293 QVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVV 352
+ NLIPFNP + R S ++V +F K+L + I TTVRK G DI ACGQL
Sbjct: 289 RCKFNLIPFNPFPASGLLR-SPHNQVQAFAKMLSDA-GIITTVRKTRGDDIDAACGQLAG 346
Query: 353 NLPDKISA 360
++ D+ A
Sbjct: 347 DVKDRTRA 354
>gi|260889579|ref|ZP_05900842.1| radical SAM enzyme, Cfr family [Leptotrichia hofstadii F0254]
gi|260860990|gb|EEX75490.1| radical SAM enzyme, Cfr family [Leptotrichia hofstadii F0254]
Length = 365
Score = 210 bits (535), Expect = 8e-52, Method: Compositional matrix adjust.
Identities = 119/345 (34%), Positives = 196/345 (56%), Gaps = 26/345 (7%)
Query: 14 IRAEFEKAGIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKF--KPLTSTLHSV 71
++ +F + G+K+ ++ ++ ++DEF ++ +L+ +F L H V
Sbjct: 27 LQKKFVEIGLKKFNASQVFDWLHNKLVFDFDEFSNISKKDREILKERFYVAKLEFKTHQV 86
Query: 72 VDSSDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGC 131
+ D T K L +L++ +E+V++ + + R TLC+SSQ+GC +GC
Sbjct: 87 SEDGD--TEKFLFELKDRRLIESVLISHKN--------------RHTLCVSSQIGCLIGC 130
Query: 132 NFCATGTMGFKSNLSSGEIVEQLVHAS-----RLSNIRNVVFMGMGEPLNNYAALVEAVR 186
+FCAT TM ++ NLS EI+ Q + R + NVV+MGMGEP NY A++ ++
Sbjct: 131 DFCATATMTYERNLSISEILLQYYYVQKHLLQRGEKLGNVVYMGMGEPFLNYDAVLGSIN 190
Query: 187 IMTGLPFQVSPKR-ITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAF 245
++ Q KR T+ST GIV+ I +F + +NLA+SLH+ DVR +IMP + +
Sbjct: 191 MLNSPKGQNFSKRNFTISTSGIVNGIKRFTENENQINLAISLHSVKDDVRSEIMPINKRW 250
Query: 246 PLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIG 305
+++L +L EYQK ++ +I EYI++D +N E + A +L L +F +VNLIP+NP+G
Sbjct: 251 GVKQLKESLLEYQKQTKNRITFEYILIDDLNCEPEDARELAGFLNSFSCLVNLIPYNPVG 310
Query: 306 SVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 350
++ S K F K+L+ N+ T+R+ GQDI+ ACGQL
Sbjct: 311 G-KPYKRPSKQKQREFYKLLKDK-NVNVTLRETKGQDIAAACGQL 353
>gi|408372889|ref|ZP_11170588.1| Fe-S-cluster redox protein [Alcanivorax hongdengensis A-11-3]
gi|407767241|gb|EKF75679.1| Fe-S-cluster redox protein [Alcanivorax hongdengensis A-11-3]
Length = 381
Score = 210 bits (535), Expect = 8e-52, Method: Compositional matrix adjust.
Identities = 124/296 (41%), Positives = 170/296 (57%), Gaps = 30/296 (10%)
Query: 75 SDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFC 134
S D T K + +L GG VE V + P G R TLC+SSQVGC + C+FC
Sbjct: 77 SRDGTRKWVFRLDTGGAVETVFI--------------PDGRRGTLCVSSQVGCAVDCSFC 122
Query: 135 ATGTMGFKSNLSSGEIVEQLVHASRLSN---------IRNVVFMGMGEPLNNYAALVEAV 185
+TG GF+ +++S EI+ Q+ ASR I NVV MGMGEPL NY ++ A+
Sbjct: 123 STGKQGFQRDMTSAEIIGQVWQASRAFGPRRNLGEHPITNVVMMGMGEPLLNYDNVLTAM 182
Query: 186 RIMT-GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARA 244
RIM L + + KRIT+ST G++ +++ DL + LAVSLHAP ++R +++P R
Sbjct: 183 RIMKDDLGYGIGKKRITLSTSGVIPKMDQLSDDL-DVALAVSLHAPNDELRNELVPLNRK 241
Query: 245 FPLEKLMNALKEYQKNSQQK---IFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPF 301
+PL++LM A + Y KN + I +EY+ML VND+ +HA QL KLL V +NLIPF
Sbjct: 242 YPLKELMAACRRYSKNITHRHNTITMEYVMLRDVNDKPEHARQLVKLLNGIPVKINLIPF 301
Query: 302 NPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDK 357
NP R+ D + F K L + + TTVR G DI ACGQLV + D+
Sbjct: 302 NPFPHAGYERSRKSD-ILEFHKYLNDN-GLLTTVRTTRGDDIDAACGQLVGQVQDR 355
>gi|386866950|ref|YP_006279944.1| ribosomal RNA large subunit methyltransferase N [Bifidobacterium
animalis subsp. animalis ATCC 25527]
gi|385701033|gb|AFI62981.1| ribosomal RNA large subunit methyltransferase N [Bifidobacterium
animalis subsp. animalis ATCC 25527]
Length = 398
Score = 210 bits (535), Expect = 8e-52, Method: Compositional matrix adjust.
Identities = 126/325 (38%), Positives = 182/325 (56%), Gaps = 36/325 (11%)
Query: 46 FPSLPSAAYSLLRSKFKP--LTSTLHSVVDSSDDVTTKLLVKLQNGGFVEAVIMRYDSSL 103
F P+ + +F P + V D D T K L +L +G +E+V+MRY +
Sbjct: 87 FTDFPAGKRDEVAREFFPTLIREVTRQVAD--DGQTIKTLWELFDGSKIESVLMRYPN-- 142
Query: 104 GKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRL--- 160
R+TLCISSQVGC MGC FCATG +G N+S+GEI+EQ+ A+ +
Sbjct: 143 ------------RTTLCISSQVGCGMGCPFCATGQLGLTRNMSTGEILEQVRIAAAMMER 190
Query: 161 -------SNIRNVVFMGMGEPLNNYAALVEAVRIMTGLP---FQVSPKRITVSTVGIVHA 210
+ NVVFMGMGEP+ NY A+V AVR ++ +P F +S + ITVSTVG+V
Sbjct: 191 GEVAGGPGRLSNVVFMGMGEPMGNYRAIVSAVRQISAMPPEGFGISARNITVSTVGVVPG 250
Query: 211 INKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYI 270
I + + + LAVSLHAP +R +++P R F ++++++A +Y S++++ IEY
Sbjct: 251 IRRLAQEGMPVRLAVSLHAPNNALRDELVPMNRRFNVDEVLDAAHDYYLASKRRVSIEYA 310
Query: 271 MLDGVNDEEQHAHQLGKLLETF---QVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRG 327
++ G+ND+E HA QL L + VN IP NPI S++ S + F +IL
Sbjct: 311 LMRGINDQEVHARQLANRLNHYGDNWAHVNPIPLNPIEG-SKWTASKPEDERRFLEILHN 369
Query: 328 SYNIRTTVRKQMGQDISGACGQLVV 352
+ I T+R GQDI GACGQL
Sbjct: 370 A-GITATLRDTRGQDIDGACGQLAA 393
>gi|241890016|ref|ZP_04777314.1| radical SAM enzyme, Cfr family [Gemella haemolysans ATCC 10379]
gi|241863638|gb|EER68022.1| radical SAM enzyme, Cfr family [Gemella haemolysans ATCC 10379]
Length = 377
Score = 210 bits (535), Expect = 9e-52, Method: Compositional matrix adjust.
Identities = 117/336 (34%), Positives = 196/336 (58%), Gaps = 25/336 (7%)
Query: 22 GIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHSVV-DSSDDVTT 80
G K+ I+ ++ + ++ E ++P + L +F+ +TL +++ S D T
Sbjct: 39 GEKKFRAKQIFDWLYKKRITDFSEMKNVPKSLQEKLAEEFE--ITTLKTIIKQESADGTM 96
Query: 81 KLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMG 140
K L +LQ+ +E+V+M+ KY ++LC+++QVGC++GC FCA+ G
Sbjct: 97 KFLFELQDKYTIESVLMK-----NKYG---------NSLCVTTQVGCRIGCTFCASTLGG 142
Query: 141 FKSNLSSGEIVEQLVHA-----SRLSNIRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQ 194
K NL +GEIV Q++ + I ++V MG+GEP NY +++ +RI+ + F
Sbjct: 143 LKRNLEAGEIVSQVLKVQQELDKKGERISSIVIMGIGEPFENYDEMMDFIRIVNSDESFN 202
Query: 195 VSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNAL 254
+ + ITVST GIV I F ++ +N AVSLHAP ++R +IMP RA+ ++KLM AL
Sbjct: 203 IGARHITVSTSGIVPKIYDFANEKVQINFAVSLHAPTNELRSKIMPVNRAYNIDKLMEAL 262
Query: 255 KEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSS 314
K YQ+ + ++I EY ++ VND+++HA +L ++++ VNLIP N + + RTS
Sbjct: 263 KYYQETTNRRITFEYGLMGKVNDQKEHAEKLSEIIKGLNCHVNLIPINYVPERNYVRTSK 322
Query: 315 DDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 350
D + +F+K+L+ + + T+R+ G DI ACGQL
Sbjct: 323 SD-IFAFEKVLKKN-KVNVTIRRTQGDDIDAACGQL 356
>gi|183601687|ref|ZP_02963057.1| hypothetical protein BIFLAC_03507 [Bifidobacterium animalis subsp.
lactis HN019]
gi|241190814|ref|YP_002968208.1| ribosomal RNA large subunit methyltransferase N [Bifidobacterium
animalis subsp. lactis Bl-04]
gi|241196220|ref|YP_002969775.1| ribosomal RNA large subunit methyltransferase N [Bifidobacterium
animalis subsp. lactis DSM 10140]
gi|384193808|ref|YP_005579554.1| radical SAM enzyme, Cfr family [Bifidobacterium animalis subsp.
lactis BLC1]
gi|384195372|ref|YP_005581117.1| hypothetical protein BalV_0750 [Bifidobacterium animalis subsp.
lactis V9]
gi|423679341|ref|ZP_17654217.1| ribosomal RNA large subunit methyltransferase N [Bifidobacterium
animalis subsp. lactis BS 01]
gi|183219293|gb|EDT89934.1| hypothetical protein BIFLAC_03507 [Bifidobacterium animalis subsp.
lactis HN019]
gi|240249206|gb|ACS46146.1| hypothetical protein Balac_0778 [Bifidobacterium animalis subsp.
lactis Bl-04]
gi|240250774|gb|ACS47713.1| hypothetical protein Balat_0778 [Bifidobacterium animalis subsp.
lactis DSM 10140]
gi|295793803|gb|ADG33338.1| hypothetical protein BalV_0750 [Bifidobacterium animalis subsp.
lactis V9]
gi|345282667|gb|AEN76521.1| radical SAM enzyme, Cfr family [Bifidobacterium animalis subsp.
lactis BLC1]
gi|366041452|gb|EHN17947.1| ribosomal RNA large subunit methyltransferase N [Bifidobacterium
animalis subsp. lactis BS 01]
Length = 398
Score = 210 bits (535), Expect = 9e-52, Method: Compositional matrix adjust.
Identities = 126/325 (38%), Positives = 182/325 (56%), Gaps = 36/325 (11%)
Query: 46 FPSLPSAAYSLLRSKFKP--LTSTLHSVVDSSDDVTTKLLVKLQNGGFVEAVIMRYDSSL 103
F P+ + +F P + V D D T K L +L +G +E+V+MRY +
Sbjct: 87 FTDFPAGKRDEVAREFFPTLIREVTRQVAD--DGQTIKTLWELFDGSKIESVLMRYPN-- 142
Query: 104 GKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRL--- 160
R+TLCISSQVGC MGC FCATG +G N+S+GEI+EQ+ A+ +
Sbjct: 143 ------------RTTLCISSQVGCGMGCPFCATGQLGLTRNMSTGEILEQVRIAAAMMER 190
Query: 161 -------SNIRNVVFMGMGEPLNNYAALVEAVRIMTGLP---FQVSPKRITVSTVGIVHA 210
+ NVVFMGMGEP+ NY A+V AVR ++ +P F +S + ITVSTVG+V
Sbjct: 191 GEVAGGPGRLSNVVFMGMGEPMGNYRAIVSAVRQISAMPPEGFGISARNITVSTVGVVPG 250
Query: 211 INKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYI 270
I + + + LAVSLHAP +R +++P R F ++++++A +Y S++++ IEY
Sbjct: 251 IRRLAQEGMPVRLAVSLHAPNNALRDELVPMNRRFNVDEVLDAAHDYYLASKRRVSIEYA 310
Query: 271 MLDGVNDEEQHAHQLGKLLETF---QVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRG 327
++ G+ND+E HA QL L + VN IP NPI S++ S + F +IL
Sbjct: 311 LMRGINDQEIHARQLANRLNHYGDNWAHVNPIPLNPIEG-SKWTASKPEDERRFLEILHN 369
Query: 328 SYNIRTTVRKQMGQDISGACGQLVV 352
+ I T+R GQDI GACGQL
Sbjct: 370 A-GITATLRDTRGQDIDGACGQLAA 393
>gi|189218104|ref|YP_001938746.1| Radical SAM family enzyme [Methylacidiphilum infernorum V4]
gi|189184962|gb|ACD82147.1| Radical SAM family enzyme [Methylacidiphilum infernorum V4]
Length = 314
Score = 210 bits (534), Expect = 9e-52, Method: Compositional matrix adjust.
Identities = 108/279 (38%), Positives = 173/279 (62%), Gaps = 13/279 (4%)
Query: 75 SDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFC 134
S D T K L +L +G +E V++ S G R TLC+S+QVGC +GC+FC
Sbjct: 9 SIDGTKKFLWQLCDGHAIETVLIPATDSRG--------SSERLTLCVSTQVGCALGCHFC 60
Query: 135 ATGTMGFKSNLSSGEIVEQLVHASRL--SNIRNVVFMGMGEPLNNYAALVEAVRIMTG-L 191
A+G +GFK NLS GEIVEQ++ + + + ++VFMGMGEPL NY L++++R+++
Sbjct: 61 ASGLLGFKRNLSCGEIVEQVLLSESIVKQRVSHIVFMGMGEPLLNYDQLIKSIRLISSSW 120
Query: 192 PFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLM 251
+SP++IT+ST GI I K + LAVSLHA ++R +IMP +PL +L+
Sbjct: 121 GIGISPRKITISTSGIAPRIRKLALETLPFRLAVSLHATTDELRSKIMPINSKYPLSELI 180
Query: 252 NALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFR 311
+ +E+ +QKI +EYI++ G+ND + A +L ++ + + VNLIP+NPI ++
Sbjct: 181 KSCEEFCSRRKQKITLEYILISGLNDRREDAERLARIATSLRAKVNLIPYNPIERLAWKS 240
Query: 312 TSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 350
+++S F+ + + ++ ++RK+ G+DI GACGQL
Sbjct: 241 PDQKEQLSFFRWL--KNKAVQVSIRKERGRDIDGACGQL 277
>gi|219683780|ref|YP_002470163.1| ribosomal RNA large subunit methyltransferase N [Bifidobacterium
animalis subsp. lactis AD011]
gi|387820682|ref|YP_006300725.1| ribosomal RNA large subunit methyltransferase N [Bifidobacterium
animalis subsp. lactis B420]
gi|387822356|ref|YP_006302305.1| ribosomal RNA large subunit methyltransferase N [Bifidobacterium
animalis subsp. lactis Bi-07]
gi|219621430|gb|ACL29587.1| radical SAM enzyme, Cfr family protein [Bifidobacterium animalis
subsp. lactis AD011]
gi|386653383|gb|AFJ16513.1| Ribosomal RNA large subunit methyltransferase N [Bifidobacterium
animalis subsp. lactis B420]
gi|386654964|gb|AFJ18093.1| Ribosomal RNA large subunit methyltransferase N [Bifidobacterium
animalis subsp. lactis Bi-07]
Length = 393
Score = 210 bits (534), Expect = 9e-52, Method: Compositional matrix adjust.
Identities = 126/325 (38%), Positives = 182/325 (56%), Gaps = 36/325 (11%)
Query: 46 FPSLPSAAYSLLRSKFKP--LTSTLHSVVDSSDDVTTKLLVKLQNGGFVEAVIMRYDSSL 103
F P+ + +F P + V D D T K L +L +G +E+V+MRY +
Sbjct: 82 FTDFPAGKRDEVAREFFPTLIREVTRQVAD--DGQTIKTLWELFDGSKIESVLMRYPN-- 137
Query: 104 GKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRL--- 160
R+TLCISSQVGC MGC FCATG +G N+S+GEI+EQ+ A+ +
Sbjct: 138 ------------RTTLCISSQVGCGMGCPFCATGQLGLTRNMSTGEILEQVRIAAAMMER 185
Query: 161 -------SNIRNVVFMGMGEPLNNYAALVEAVRIMTGLP---FQVSPKRITVSTVGIVHA 210
+ NVVFMGMGEP+ NY A+V AVR ++ +P F +S + ITVSTVG+V
Sbjct: 186 GEVAGGPGRLSNVVFMGMGEPMGNYRAIVSAVRQISAMPPEGFGISARNITVSTVGVVPG 245
Query: 211 INKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYI 270
I + + + LAVSLHAP +R +++P R F ++++++A +Y S++++ IEY
Sbjct: 246 IRRLAQEGMPVRLAVSLHAPNNALRDELVPMNRRFNVDEVLDAAHDYYLASKRRVSIEYA 305
Query: 271 MLDGVNDEEQHAHQLGKLLETF---QVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRG 327
++ G+ND+E HA QL L + VN IP NPI S++ S + F +IL
Sbjct: 306 LMRGINDQEIHARQLANRLNHYGDNWAHVNPIPLNPIEG-SKWTASKPEDERRFLEILHN 364
Query: 328 SYNIRTTVRKQMGQDISGACGQLVV 352
+ I T+R GQDI GACGQL
Sbjct: 365 A-GITATLRDTRGQDIDGACGQLAA 388
>gi|317482872|ref|ZP_07941880.1| cfr family radical SAM enzyme [Bifidobacterium sp. 12_1_47BFAA]
gi|419848065|ref|ZP_14371191.1| 23S rRNA m2A2503 methyltransferase [Bifidobacterium longum subsp.
longum 1-6B]
gi|419856052|ref|ZP_14378795.1| 23S rRNA m2A2503 methyltransferase [Bifidobacterium longum subsp.
longum 44B]
gi|291516841|emb|CBK70457.1| 23S rRNA m(2)A-2503 methyltransferase [Bifidobacterium longum
subsp. longum F8]
gi|316915717|gb|EFV37131.1| cfr family radical SAM enzyme [Bifidobacterium sp. 12_1_47BFAA]
gi|386408743|gb|EIJ23635.1| 23S rRNA m2A2503 methyltransferase [Bifidobacterium longum subsp.
longum 1-6B]
gi|386414340|gb|EIJ28899.1| 23S rRNA m2A2503 methyltransferase [Bifidobacterium longum subsp.
longum 44B]
Length = 389
Score = 210 bits (534), Expect = 9e-52, Method: Compositional matrix adjust.
Identities = 125/326 (38%), Positives = 186/326 (57%), Gaps = 36/326 (11%)
Query: 45 EFPSLPSAAYSLLRSKFKP--LTSTLHSVVDSSDDVTTKLLVKLQNGGFVEAVIMRYDSS 102
EF P+A S + F P +T V D + T K L KL +G +E+V+MRY +
Sbjct: 79 EFTDFPAAKRSEAAAAFFPQLITEVTRQVAD--EGTTIKTLWKLFDGSLIESVLMRYPT- 135
Query: 103 LGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRL-- 160
R+TLCISSQVGC M C FCATG +G N+S+GEI+EQ+ A+++
Sbjct: 136 -------------RTTLCISSQVGCGMDCPFCATGKLGLTRNMSTGEIIEQVRVAAKMMR 182
Query: 161 --------SNIRNVVFMGMGEPLNNYAALVEAVRIMTGLP---FQVSPKRITVSTVGIVH 209
+ N+VFMGMGEP+ NY +++ AVR ++ +P F +S + ITVSTVG+V
Sbjct: 183 DGEVAGGEGRLSNIVFMGMGEPMGNYNSVLSAVRQISAMPPEGFGISARNITVSTVGVVP 242
Query: 210 AINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEY 269
I K ++ + LAVSLHAP ++R +++P + F +++++A +Y S++++ IEY
Sbjct: 243 GIKKLTAEGIPVRLAVSLHAPSDELRDELVPMNKRFNTKQVLDAAHDYWLASKRRVSIEY 302
Query: 270 IMLDGVNDEEQHAHQLGKLLETF---QVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILR 326
++ G+ND+ +HA L K L + VN IP NPI S++ S + F +IL
Sbjct: 303 ALMRGINDQAEHAQLLAKRLNHYGDNWAHVNPIPLNPIEG-SKWTASKPEDEQRFLEILH 361
Query: 327 GSYNIRTTVRKQMGQDISGACGQLVV 352
+ I T+R GQDI GACGQL
Sbjct: 362 RA-GITATLRDTRGQDIDGACGQLAA 386
>gi|296329385|ref|ZP_06871885.1| cfr family radical SAM enzyme [Fusobacterium nucleatum subsp.
nucleatum ATCC 23726]
gi|296153505|gb|EFG94323.1| cfr family radical SAM enzyme [Fusobacterium nucleatum subsp.
nucleatum ATCC 23726]
Length = 358
Score = 210 bits (534), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 123/336 (36%), Positives = 187/336 (55%), Gaps = 17/336 (5%)
Query: 22 GIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSK-FKPLTSTLHSVVDSSDDVTT 80
G+K+ + ++ ++ + +DE +L +L+ K + P + L V S D T
Sbjct: 24 GLKKFYGKEVFIWLHKKITRSFDEMTNLSLKDREILKEKTYIPFFNLLKYQV-SKIDKTE 82
Query: 81 KLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMG 140
K L +L++GG +E V++R+ S K R+TLC+SSQVGC + C+FCATG G
Sbjct: 83 KFLFELEDGGTIETVLLRHKDSKNK--------EIRNTLCVSSQVGCPVKCSFCATGQSG 134
Query: 141 FKSNLSSGEIVEQLVHASRL-----SNIRNVVFMGMGEPLNNYAALVEAVRIMTGLP-FQ 194
+ NLS EI+ Q+ R N+ N+VFMGMGEPL N L +A+ I++
Sbjct: 135 YMRNLSVSEILNQIYTVERRLRKKGENLNNLVFMGMGEPLLNIDNLSKALSIISNENGIN 194
Query: 195 VSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNAL 254
+S ++IT+ST G+V I K D + LA+SLH+ + + R +I+P + FPLE L L
Sbjct: 195 ISKRKITISTSGVVSGIEKILLDKIPIELAISLHSAINEKRDKIIPINKNFPLEDLSAVL 254
Query: 255 KEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSS 314
EYQK ++++I EYI++D N E A+ L + F VVNLIP+N + R S
Sbjct: 255 IEYQKQTKRRITFEYILIDNFNISETDANALADFIHQFDHVVNLIPYNEVEGAEHTRPSV 314
Query: 315 DDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 350
K++ F L+ + T+R++ G DI GACGQL
Sbjct: 315 -KKINKFYNYLKNVRKVNVTLRQEKGSDIDGACGQL 349
>gi|239621375|ref|ZP_04664406.1| conserved hypothetical protein [Bifidobacterium longum subsp.
infantis CCUG 52486]
gi|384201448|ref|YP_005587195.1| hypothetical protein BLNIAS_01312 [Bifidobacterium longum subsp.
longum KACC 91563]
gi|239515836|gb|EEQ55703.1| conserved hypothetical protein [Bifidobacterium longum subsp.
infantis CCUG 52486]
gi|338754455|gb|AEI97444.1| hypothetical protein BLNIAS_01312 [Bifidobacterium longum subsp.
longum KACC 91563]
Length = 389
Score = 210 bits (534), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 125/326 (38%), Positives = 186/326 (57%), Gaps = 36/326 (11%)
Query: 45 EFPSLPSAAYSLLRSKFKP--LTSTLHSVVDSSDDVTTKLLVKLQNGGFVEAVIMRYDSS 102
EF P+A S + F P +T V D + T K L KL +G +E+V+MRY +
Sbjct: 79 EFTDFPAAKRSEAAAAFFPRLITEVTRQVAD--EGTTIKTLWKLFDGSLIESVLMRYPT- 135
Query: 103 LGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRL-- 160
R+TLCISSQVGC M C FCATG +G N+S+GEI+EQ+ A+++
Sbjct: 136 -------------RTTLCISSQVGCGMDCPFCATGKLGLTRNMSTGEIIEQVRVAAKMMR 182
Query: 161 --------SNIRNVVFMGMGEPLNNYAALVEAVRIMTGLP---FQVSPKRITVSTVGIVH 209
+ N+VFMGMGEP+ NY +++ AVR ++ +P F +S + ITVSTVG+V
Sbjct: 183 DGEVAGGEGRLSNIVFMGMGEPMGNYNSVLSAVRQISAMPPEGFGISARNITVSTVGVVP 242
Query: 210 AINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEY 269
I K ++ + LAVSLHAP ++R +++P + F +++++A +Y S++++ IEY
Sbjct: 243 GIKKLTAEGIPVRLAVSLHAPSDELRDELVPMNKRFNTKQVLDAAHDYWLASKRRVSIEY 302
Query: 270 IMLDGVNDEEQHAHQLGKLLETF---QVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILR 326
++ G+ND+ +HA L K L + VN IP NPI S++ S + F +IL
Sbjct: 303 ALMRGINDQAEHAQLLAKRLNHYGDNWAHVNPIPLNPIEG-SKWTASKPEDEQRFLEILH 361
Query: 327 GSYNIRTTVRKQMGQDISGACGQLVV 352
+ I T+R GQDI GACGQL
Sbjct: 362 RA-GITATLRDTRGQDIDGACGQLAA 386
>gi|322691316|ref|YP_004220886.1| hypothetical protein BLLJ_1127 [Bifidobacterium longum subsp.
longum JCM 1217]
gi|320456172|dbj|BAJ66794.1| conserved hypothetical protein [Bifidobacterium longum subsp.
longum JCM 1217]
Length = 389
Score = 210 bits (534), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 125/326 (38%), Positives = 186/326 (57%), Gaps = 36/326 (11%)
Query: 45 EFPSLPSAAYSLLRSKFKP--LTSTLHSVVDSSDDVTTKLLVKLQNGGFVEAVIMRYDSS 102
EF P+A S + F P +T V D + T K L KL +G +E+V+MRY +
Sbjct: 79 EFTDFPAAKRSEAAAAFFPRLITEVTRQVAD--EGTTIKTLWKLFDGSLIESVLMRYPT- 135
Query: 103 LGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRL-- 160
R+TLCISSQVGC M C FCATG +G N+S+GEI+EQ+ A+++
Sbjct: 136 -------------RTTLCISSQVGCGMDCPFCATGKLGLTRNMSTGEIIEQVRVAAKMMR 182
Query: 161 --------SNIRNVVFMGMGEPLNNYAALVEAVRIMTGLP---FQVSPKRITVSTVGIVH 209
+ N+VFMGMGEP+ NY +++ AVR ++ +P F +S + ITVSTVG+V
Sbjct: 183 DGEVAGGEGRLSNIVFMGMGEPMGNYNSVLSAVRQISAMPPEGFGISARNITVSTVGVVP 242
Query: 210 AINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEY 269
I K ++ + LAVSLHAP ++R +++P + F +++++A +Y S++++ IEY
Sbjct: 243 GIKKLTAEGIPVRLAVSLHAPSDELRDELVPMNKRFNTKQVLDAAHDYWLASKRRVSIEY 302
Query: 270 IMLDGVNDEEQHAHQLGKLLETF---QVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILR 326
++ G+ND+ +HA L K L + VN IP NPI S++ S + F +IL
Sbjct: 303 ALMRGINDQAEHAQLLAKRLNHYGDNWAHVNPIPLNPIEG-SKWTASKPEDEQRFLEILH 361
Query: 327 GSYNIRTTVRKQMGQDISGACGQLVV 352
+ I T+R GQDI GACGQL
Sbjct: 362 RA-GITATLRDTRGQDIDGACGQLAA 386
>gi|269120621|ref|YP_003308798.1| radical SAM enzyme, Cfr family [Sebaldella termitidis ATCC 33386]
gi|268614499|gb|ACZ08867.1| radical SAM enzyme, Cfr family [Sebaldella termitidis ATCC 33386]
Length = 357
Score = 210 bits (534), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 127/358 (35%), Positives = 192/358 (53%), Gaps = 30/358 (8%)
Query: 1 MTYDYRSVFDGGIIRAEFEKAGIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSK 60
+ YD + +++ F+K +KQ I+ ++ +D F ++ ++L
Sbjct: 19 LKYD---TLEKELLKLNFKKYNVKQ-----IFNWLHNKMEDNFDNFSNISKENRNILSKN 70
Query: 61 FKPLTSTLHSVVDSSDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLC 120
F TL + S +D T K L KLQ +E+V++ + + R TLC
Sbjct: 71 FFIPEITLLDHLISENDNTEKFLFKLQGNVLIESVLIGHKN--------------RYTLC 116
Query: 121 ISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN-----IRNVVFMGMGEPL 175
+SSQ GC +GC FCAT TM F+ NL EI+ Q + + N + NVVFMGMGEP
Sbjct: 117 VSSQAGCALGCEFCATATMKFEKNLDISEILMQFYYVQKYLNQKGNKLDNVVFMGMGEPF 176
Query: 176 NNYAALVEAVRIMTGLPFQVSPKR-ITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDV 234
N+ +++++ I+ + Q KR TVST G+V I KF +NLAVSLH+ +
Sbjct: 177 LNFDNVMDSIDILNSIDGQNCSKRNFTVSTSGLVPYIEKFTDLDSQVNLAVSLHSVNDEY 236
Query: 235 RCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQV 294
R +IMP + +PL+ L +L YQK ++++I EYI++D N + A +L K L F
Sbjct: 237 RSKIMPVNKKYPLKDLKKSLLAYQKKTKKRISFEYILIDDFNCSKNDAFELTKFLREFSC 296
Query: 295 VVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVV 352
+VNLIP+NP+ S + T S + F +IL + NI T+R+ GQDI+ ACGQL V
Sbjct: 297 LVNLIPYNPVAGKS-YATPSKTRQQEFYRILLKN-NINATLRETKGQDIAAACGQLKV 352
>gi|23466064|ref|NP_696667.1| ribosomal RNA large subunit methyltransferase N [Bifidobacterium
longum NCC2705]
gi|81753640|sp|Q8G481.1|RLMN_BIFLO RecName: Full=Probable dual-specificity RNA methyltransferase RlmN;
AltName: Full=23S rRNA
(adenine(2503)-C(2))-methyltransferase; AltName:
Full=23S rRNA m2A2503 methyltransferase; AltName:
Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=tRNA (adenine(37)-C(2))-methyltransferase;
AltName: Full=tRNA m2A37 methyltransferase
gi|23326790|gb|AAN25303.1| widely conserved hypothetical protein [Bifidobacterium longum
NCC2705]
Length = 389
Score = 210 bits (534), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 125/326 (38%), Positives = 186/326 (57%), Gaps = 36/326 (11%)
Query: 45 EFPSLPSAAYSLLRSKFKP--LTSTLHSVVDSSDDVTTKLLVKLQNGGFVEAVIMRYDSS 102
EF P+A S + F P +T V D + T K L KL +G +E+V+MRY +
Sbjct: 79 EFTDFPAAKRSEAAAAFFPQLITEVTRQVAD--EGTTIKTLWKLFDGSLIESVLMRYPT- 135
Query: 103 LGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRL-- 160
R+TLCISSQVGC M C FCATG +G N+S+GEI+EQ+ A+++
Sbjct: 136 -------------RTTLCISSQVGCGMDCPFCATGKLGLTRNMSTGEIIEQVRVAAKMMR 182
Query: 161 --------SNIRNVVFMGMGEPLNNYAALVEAVRIMTGLP---FQVSPKRITVSTVGIVH 209
+ N+VFMGMGEP+ NY +++ AVR ++ +P F +S + ITVSTVG+V
Sbjct: 183 DGEVAGGEGRLSNIVFMGMGEPMGNYNSVLSAVRQISAMPPEGFGISARNITVSTVGVVP 242
Query: 210 AINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEY 269
I K ++ + LAVSLHAP ++R +++P + F +++++A +Y S++++ IEY
Sbjct: 243 GIKKLTAEGIPVRLAVSLHAPSDELRDELVPMNKRFNTKQVLDAAHDYWLASKRRVSIEY 302
Query: 270 IMLDGVNDEEQHAHQLGKLLETF---QVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILR 326
++ G+ND+ +HA L K L + VN IP NPI S++ S + F +IL
Sbjct: 303 ALMRGINDQAEHAQLLAKRLNHYGDNWAHVNPIPLNPIEG-SKWTASKPEDEQRFLEILH 361
Query: 327 GSYNIRTTVRKQMGQDISGACGQLVV 352
+ I T+R GQDI GACGQL
Sbjct: 362 RA-GITATLRDTRGQDIDGACGQLAA 386
>gi|257125946|ref|YP_003164060.1| radical SAM enzyme, Cfr family [Leptotrichia buccalis C-1013-b]
gi|257049885|gb|ACV39069.1| radical SAM enzyme, Cfr family [Leptotrichia buccalis C-1013-b]
Length = 372
Score = 209 bits (533), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 117/316 (37%), Positives = 184/316 (58%), Gaps = 26/316 (8%)
Query: 43 WDEFPSLPSAAYSLLRSKF--KPLTSTLHSVVDSSDDVTTKLLVKLQNGGFVEAVIMRYD 100
+DEF ++ +L+ KF + L H V + D T K L +L++ +E+V++ +
Sbjct: 62 FDEFSNISKKDREILKEKFYVEKLEFKTHQVSEDGD--TEKFLFELKDKRLIESVLISHK 119
Query: 101 SSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHAS-- 158
+ R TLC+SSQ+GC +GC+FCAT TM ++ NLS EI+ Q +
Sbjct: 120 N--------------RHTLCVSSQIGCLIGCDFCATATMTYERNLSISEILLQYYYVQKH 165
Query: 159 ---RLSNIRNVVFMGMGEPLNNYAALVEAVRIMTGLPFQVSPKR-ITVSTVGIVHAINKF 214
R + NVV+MGMGEP NY A++ ++ ++ Q KR T+ST GIV+ I +F
Sbjct: 166 LLQRGEKLGNVVYMGMGEPFLNYDAVLGSINMLNSPKGQNFSKRNFTISTSGIVNGIKRF 225
Query: 215 HSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDG 274
+ +NLA+SLH+ DVR +IMP + + +++L +L EYQK ++ +I EYI+++
Sbjct: 226 TENENQINLAISLHSVKDDVRNEIMPINKRWGVKQLKESLLEYQKQTKNRITFEYILIND 285
Query: 275 VNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTT 334
+N E + A +L L +F +VNLIP+NP+G ++T S K F K+L+ N+ T
Sbjct: 286 LNCEPEDARELAGFLNSFSCLVNLIPYNPVGG-KPYKTPSKQKQREFYKLLKDK-NVNVT 343
Query: 335 VRKQMGQDISGACGQL 350
+R+ GQDI+ ACGQL
Sbjct: 344 LRETKGQDIAAACGQL 359
>gi|86742258|ref|YP_482658.1| ribosomal RNA large subunit methyltransferase N [Frankia sp. CcI3]
gi|123764529|sp|Q2J713.1|RLMN_FRASC RecName: Full=Probable dual-specificity RNA methyltransferase RlmN;
AltName: Full=23S rRNA
(adenine(2503)-C(2))-methyltransferase; AltName:
Full=23S rRNA m2A2503 methyltransferase; AltName:
Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=tRNA (adenine(37)-C(2))-methyltransferase;
AltName: Full=tRNA m2A37 methyltransferase
gi|86569120|gb|ABD12929.1| 23S rRNA m(2)A-2503 methyltransferase [Frankia sp. CcI3]
Length = 421
Score = 209 bits (533), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 119/291 (40%), Positives = 169/291 (58%), Gaps = 29/291 (9%)
Query: 76 DDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCA 135
D +T K + +G +E+VIMRY R+T+C+SSQ GC MGC FCA
Sbjct: 110 DGLTRKTAWRTVDGASLESVIMRYPD--------------RATVCVSSQAGCGMGCPFCA 155
Query: 136 TGTMGFKSNLSSGEIVEQLVHASRL----------SNIRNVVFMGMGEPLNNYAALVEAV 185
TG G NLS+ EIVEQ+VHA+R+ + + NVVFMGMGEPL NYAA++ A+
Sbjct: 156 TGQGGLTRNLSTAEIVEQVVHAARVLRRRELAGGETRLSNVVFMGMGEPLANYAAVIAAL 215
Query: 186 RIMTGLP---FQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAA 242
R +T P +S + +TVSTVG+V AI + + + LAVSLHAP +R +++P
Sbjct: 216 RRLTAHPPEGLGLSARGLTVSTVGLVPAIRRLAGEGLPVTLAVSLHAPDDVLRNELVPIN 275
Query: 243 RAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFN 302
+P+ +++ A EY + + +++ +EY ++DGVND+ A L LL VNLIP N
Sbjct: 276 TRWPVVEVLAAAWEYAEVTGRRVSVEYALIDGVNDDVGRADALADLLVGRLAHVNLIPLN 335
Query: 303 PIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVN 353
P G S +R S+ +F + LR I TTVR G++I+ ACGQL
Sbjct: 336 PTGG-SSWRASAPAGQRAFVRRLR-DRGIVTTVRDTRGREIAAACGQLAAE 384
>gi|332530539|ref|ZP_08406478.1| radical sam enzyme, cfr family protein [Hylemonella gracilis ATCC
19624]
gi|332040014|gb|EGI76401.1| radical sam enzyme, cfr family protein [Hylemonella gracilis ATCC
19624]
Length = 404
Score = 209 bits (533), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 138/375 (36%), Positives = 195/375 (52%), Gaps = 52/375 (13%)
Query: 19 EKAGIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHSVV---DSS 75
E+ G K+ +++++ + ++D+ L + LR+K K V S
Sbjct: 19 ERLGEKRFRATQLFRWIHQRGASDFDQMSDLAKS----LRAKLKTAAHIQGLPVITQQES 74
Query: 76 DDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCA 135
D T K L + +G VEAV + P R TLC+SSQ GC +GC FC+
Sbjct: 75 ADGTIKWLFDVGDGNAVEAVYI--------------PEDDRGTLCVSSQAGCAVGCRFCS 120
Query: 136 TGTMGFKSNLSSGEIVEQLVHASRLSNIR---------------NVVFMGMGEPLNNYAA 180
TG GF NLS+GEIV QL HA R NVV MGMGEPL NYAA
Sbjct: 121 TGHQGFSRNLSTGEIVAQLWHAEHFLRARRQHPLQPGEDHRVITNVVMMGMGEPLQNYAA 180
Query: 181 LVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIM 239
LV A+R+M + +S +R+TVST G+V + + D P + LAVSLHAP +R ++
Sbjct: 181 LVPALRVMLDDHGYGLSRRRLTVSTSGVVPMMERLSEDCP-VALAVSLHAPNDGLRDGLV 239
Query: 240 PAARAFPLEKLMNALKEYQKNSQQK-IFIEYIMLDGVNDEEQHAHQLGKLLETFQ----- 293
P R +P+ +L++ Y ++ + I EY MLDGVND+ +HA +L L++ F+
Sbjct: 240 PLNRKYPIHELLDTCLSYLAHAPRDFITFEYCMLDGVNDQPEHARELLALMQVFRQRAAD 299
Query: 294 ------VVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGAC 347
+NLIPFNP S + S ++V +F KIL + I TTVRK G DI AC
Sbjct: 300 LGHGVGCKLNLIPFNPFPE-SGLKRSPGERVQAFAKILLEA-GIVTTVRKTRGDDIDAAC 357
Query: 348 GQLVVNLPDKISAKS 362
GQL ++ D+ S +
Sbjct: 358 GQLAGDVQDRTSVDA 372
>gi|384191061|ref|YP_005576809.1| radical SAM protein [Bifidobacterium animalis subsp. lactis BB-12]
gi|384192206|ref|YP_005577953.1| Methyltransferase [Bifidobacterium animalis subsp. lactis CNCM
I-2494]
gi|289178553|gb|ADC85799.1| Radical SAM family enzyme [Bifidobacterium animalis subsp. lactis
BB-12]
gi|340364943|gb|AEK30234.1| Methyltransferase [Bifidobacterium animalis subsp. lactis CNCM
I-2494]
Length = 430
Score = 209 bits (533), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 126/325 (38%), Positives = 182/325 (56%), Gaps = 36/325 (11%)
Query: 46 FPSLPSAAYSLLRSKFKP--LTSTLHSVVDSSDDVTTKLLVKLQNGGFVEAVIMRYDSSL 103
F P+ + +F P + V D D T K L +L +G +E+V+MRY +
Sbjct: 119 FTDFPAGKRDEVAREFFPTLIREVTRQVAD--DGQTIKTLWELFDGSKIESVLMRYPN-- 174
Query: 104 GKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRL--- 160
R+TLCISSQVGC MGC FCATG +G N+S+GEI+EQ+ A+ +
Sbjct: 175 ------------RTTLCISSQVGCGMGCPFCATGQLGLTRNMSTGEILEQVRIAAAMMER 222
Query: 161 -------SNIRNVVFMGMGEPLNNYAALVEAVRIMTGLP---FQVSPKRITVSTVGIVHA 210
+ NVVFMGMGEP+ NY A+V AVR ++ +P F +S + ITVSTVG+V
Sbjct: 223 GEVAGGPGRLSNVVFMGMGEPMGNYRAIVSAVRQISAMPPEGFGISARNITVSTVGVVPG 282
Query: 211 INKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYI 270
I + + + LAVSLHAP +R +++P R F ++++++A +Y S++++ IEY
Sbjct: 283 IRRLAQEGMPVRLAVSLHAPNNALRDELVPMNRRFNVDEVLDAAHDYYLASKRRVSIEYA 342
Query: 271 MLDGVNDEEQHAHQLGKLLETF---QVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRG 327
++ G+ND+E HA QL L + VN IP NPI S++ S + F +IL
Sbjct: 343 LMRGINDQEIHARQLANRLNHYGDNWAHVNPIPLNPIEG-SKWTASKPEDERRFLEILHN 401
Query: 328 SYNIRTTVRKQMGQDISGACGQLVV 352
+ I T+R GQDI GACGQL
Sbjct: 402 A-GITATLRDTRGQDIDGACGQLAA 425
>gi|436840639|ref|YP_007325017.1| Ribosomal RNA large subunit methyltransferase N [Desulfovibrio
hydrothermalis AM13 = DSM 14728]
gi|432169545|emb|CCO22913.1| Ribosomal RNA large subunit methyltransferase N [Desulfovibrio
hydrothermalis AM13 = DSM 14728]
Length = 345
Score = 209 bits (532), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 124/330 (37%), Positives = 191/330 (57%), Gaps = 31/330 (9%)
Query: 31 IWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHSVVDSSDDVTTKLLVKLQNGG 90
IW+++ + C++DE +L L++K LT VV +S D T KLL++L +G
Sbjct: 30 IWQWLWQKGVCDFDEMTNLAKKLRDELKNK-AVLTHPQVDVVQTSKDGTIKLLLRLADGA 88
Query: 91 FVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEI 150
VE V++ +S R T C+S+QVGC MGC FC TG MGF+ N++ EI
Sbjct: 89 LVETVLIPMES--------------RYTQCLSTQVGCAMGCTFCNTGLMGFERNMTMSEI 134
Query: 151 VEQLVHASR------LSNIRNVVFMGMGEPLNNYAALVEAVRIMT---GLPFQVSPKRIT 201
+ Q++ + L+ ++N+VFMGMGEPL N L+++++ + GL F P+RIT
Sbjct: 135 LGQVLAGRKYLQDNNLNPLKNLVFMGMGEPLLNLDNLIKSLKTLNNPEGLSF--VPRRIT 192
Query: 202 VSTVGIVHAINKFHSDLPGLNL-AVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKN 260
VS+VG + + GL L A+SLHAP Q++R +IMP A ++ L+ A+ ++
Sbjct: 193 VSSVGFIKPLEILGE--TGLTLPAISLHAPTQELREKIMPKAAKTHIDDLLAAMDKFPLK 250
Query: 261 SQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSS 320
++++ EY++L GVND +HA QL ++L + VNLI +NP G + + +KV +
Sbjct: 251 PRERVTYEYLLLGGVNDSIEHARQLVRILGHRKCKVNLIAYNP-GDRPLYEAPAREKVLA 309
Query: 321 FQKILRGSYNIRTTVRKQMGQDISGACGQL 350
F+K L I T+R+ MGQDI ACGQL
Sbjct: 310 FEKYL-WDKKITATIRRSMGQDIKAACGQL 338
>gi|340757467|ref|ZP_08694065.1| ribosomal RNA large subunit methyltransferase N [Fusobacterium
varium ATCC 27725]
gi|251834729|gb|EES63292.1| ribosomal RNA large subunit methyltransferase N [Fusobacterium
varium ATCC 27725]
Length = 350
Score = 209 bits (532), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 124/343 (36%), Positives = 189/343 (55%), Gaps = 22/343 (6%)
Query: 22 GIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSK-FKPLTSTLHSVVDSSDDVTT 80
G+K+ + I+ ++ + + +E +L LL K + P + L + S D T
Sbjct: 23 GMKKFYGKQIFNWLHQKIVRDINEITNLSLKDRELLAEKTYIPFLNLLKQQI-SKIDKTE 81
Query: 81 KLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMG 140
K L KL++G +E V++R+ R+TLCISSQVGC + C FCATG G
Sbjct: 82 KFLFKLEDGNTIETVLLRHKDK-------------RNTLCISSQVGCPVKCAFCATGQDG 128
Query: 141 FKSNLSSGEIVEQLVHASRL-----SNIRNVVFMGMGEPLNNYAALVEAVRIMTGLP-FQ 194
F NL EI+ Q+ R SNI N+VFMGMGEPL N + +++A+ I++
Sbjct: 129 FVRNLDVNEIINQVYTVERRLVKQGSNINNIVFMGMGEPLLNLSNVLKALDILSNENGIN 188
Query: 195 VSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNAL 254
+S ++IT+ST GIV I K + + LA+SLH+ + R I+P R++PLE L L
Sbjct: 189 ISKRKITISTSGIVPNIEKILLEKLPIELAISLHSAINAKRDMIIPVNRSYPLEDLYAIL 248
Query: 255 KEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSS 314
+EYQ+ ++++I EYIM++ N + A+ L + F VVNLIP+NP+ ++F S
Sbjct: 249 QEYQRQTKRRISFEYIMINEFNVSDVDANALADFVHEFDHVVNLIPYNPVAG-TEFERPS 307
Query: 315 DDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDK 357
+ K+ F L+ + T+R++ G DI GACGQL P K
Sbjct: 308 EKKIEKFFTFLKDVRKVNVTLRREKGTDIDGACGQLRQKAPKK 350
>gi|51892489|ref|YP_075180.1| hypothetical protein STH1351 [Symbiobacterium thermophilum IAM
14863]
gi|81610561|sp|Q67PQ7.1|RLMN_SYMTH RecName: Full=Probable dual-specificity RNA methyltransferase RlmN;
AltName: Full=23S rRNA
(adenine(2503)-C(2))-methyltransferase; AltName:
Full=23S rRNA m2A2503 methyltransferase; AltName:
Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=tRNA (adenine(37)-C(2))-methyltransferase;
AltName: Full=tRNA m2A37 methyltransferase
gi|51856178|dbj|BAD40336.1| conserved hypothetical protein [Symbiobacterium thermophilum IAM
14863]
Length = 371
Score = 209 bits (532), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 114/279 (40%), Positives = 172/279 (61%), Gaps = 24/279 (8%)
Query: 79 TTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGT 138
TTK L +L +G VE+V+MR S G +++C+++QVGC+MGC FCA+
Sbjct: 99 TTKYLFRLADGSQVESVLMR--QSWG------------NSVCVTTQVGCRMGCTFCASTV 144
Query: 139 MGFKSNLSSGEIVEQLVHASRL----SNIRNVVFMGMGEPLNNYAALVEAVRIM---TGL 191
G NL++GEIV+Q+V R I VV MG GEPL NY +++AVR++ GL
Sbjct: 145 GGLVRNLTAGEIVDQIVMMQRELPQGERISTVVLMGSGEPLENYDHVLKAVRLVHDPEGL 204
Query: 192 PFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLM 251
+ + IT+ST GIV + + + + LA+SLHAP ++R Q+MP AR +PL +++
Sbjct: 205 --NIGYRHITISTSGIVPGMRRLAEEGLPITLALSLHAPTDELRRQLMPVARIWPLAEVL 262
Query: 252 NALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFR 311
A +EY + + +++ EYI+++GVND + A QL +LL+ VNLIP NP+ Q+R
Sbjct: 263 AAAREYGEKTGRRVTYEYILIEGVNDGPEEARQLARLLKGALAHVNLIPMNPVAERPQYR 322
Query: 312 TSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 350
++V+ F++IL S I TTVR++MG +I ACGQL
Sbjct: 323 RPGPERVNRFKEILE-SNGIATTVRREMGGEIDAACGQL 360
>gi|124267188|ref|YP_001021192.1| hypothetical protein Mpe_A1999 [Methylibium petroleiphilum PM1]
gi|205829632|sp|A2SHB8.1|RLMN_METPP RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|124259963|gb|ABM94957.1| conserved hypothetical protein [Methylibium petroleiphilum PM1]
Length = 394
Score = 209 bits (532), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 140/373 (37%), Positives = 198/373 (53%), Gaps = 39/373 (10%)
Query: 9 FDGGIIRAEFEKAGIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLL--RSKFKPLTS 66
FD + A E+ G K+ +++++ + ++ + L + L R+ +PL
Sbjct: 9 FDLDALAAFCEQLGEKRFRATQLFRWIHQKGQSDFAQMSDLAKSLREKLAGRAVVRPLAV 68
Query: 67 TLHSVVDSSDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVG 126
V S D T K L + G VE V + P R TLCISSQ G
Sbjct: 69 LSEHV---SADGTVKWLFDVGGGNAVETVFI--------------PENDRGTLCISSQAG 111
Query: 127 CKMGCNFCATGTMGFKSNLSSGEIVEQLVHA-----SRLSN----IRNVVFMGMGEPLNN 177
C +GC FC+TG GF NLS+GEIV QL HA +RL I NVV MGMGEPL N
Sbjct: 112 CAVGCRFCSTGHQGFSRNLSTGEIVAQLWHAEHQLRARLGTTERVISNVVMMGMGEPLQN 171
Query: 178 YAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRC 236
YAAL+ A+R+M + +S +R+TVST G+V I++ D P + LAVSLHAP +R
Sbjct: 172 YAALLPALRVMLDDHGYGLSRRRVTVSTSGVVPMIDRLREDCP-VALAVSLHAPTDALRD 230
Query: 237 QIMPAARAFPLEKLMNALKEYQKNSQQK-IFIEYIMLDGVNDEEQHAHQLGKLLETFQVV 295
++P R +P+ +L+ A + Y + + + I EY MLDGVND E A +L +L+ V
Sbjct: 231 DLVPLNRKYPIAELLEACQRYLEAAPRDFITFEYCMLDGVNDSEAQARELLRLVGERGPV 290
Query: 296 ------VNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQ 349
+NLIPFNP S SS +V +F ++L + TTVR+ G DI ACGQ
Sbjct: 291 GRVPCKINLIPFNPF-PASGLTRSSVARVQAFAQLLVDG-GLVTTVRRTRGDDIDAACGQ 348
Query: 350 LVVNLPDKISAKS 362
L + D+ +A++
Sbjct: 349 LAGEVQDRTNAQA 361
>gi|345887545|ref|ZP_08838720.1| ribosomal RNA large subunit methyltransferase N [Bilophila sp.
4_1_30]
gi|345041710|gb|EGW45844.1| ribosomal RNA large subunit methyltransferase N [Bilophila sp.
4_1_30]
Length = 357
Score = 209 bits (532), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 129/335 (38%), Positives = 189/335 (56%), Gaps = 34/335 (10%)
Query: 31 IWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHS---VVDSSDDVTTKLLVKLQ 87
+W+++ + +D + LR+K + + V +S D T KLL++L+
Sbjct: 30 VWQWIWQKHATSFDAMTDVSKQ----LRAKLAEVAEIVLPEIVTVQTSSDGTEKLLLRLR 85
Query: 88 NGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSS 147
+G VE VI+ S G+ G R C+SSQ+GC MGC FC+TGTMGF N+++
Sbjct: 86 DGTLVETVIL---PSTGQ------DGSVRIAQCVSSQIGCAMGCTFCSTGTMGFIRNMTA 136
Query: 148 GEIVEQ-LVHASRLSN-------IRNVVFMGMGEPLNNYAALVEAVRIMT---GLPFQVS 196
GEI+ Q LV RL + IRN+VFMGMGEPL N A+ ++ G+ F S
Sbjct: 137 GEILSQVLVARMRLGDNRIDHPIIRNLVFMGMGEPLLNLRETTRALEMLNHDKGMDF--S 194
Query: 197 PKRITVSTVGIVHAINKFHSDLPGLN-LAVSLHAPVQDVRCQIMPAARAFPLEKLMNALK 255
P+RITVST GI + + GL LAVSLHAP Q++R +IMP A + L+ LM L+
Sbjct: 195 PRRITVSTCGIKAGLRELGDS--GLAFLAVSLHAPNQELRAKIMPKAANWHLDDLMATLE 252
Query: 256 EYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSD 315
Y +++ I EY++L GVND+ +HA +L KL+ + +NLI +NP ++ ++
Sbjct: 253 SYPLKTREHITFEYLLLGGVNDQPEHARELAKLVSRVKGKLNLIAYNP-SETQLYKAPTE 311
Query: 316 DKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 350
+ +F+KIL S + +RK GQDI ACGQL
Sbjct: 312 ADILAFEKIL-WSKGVTAILRKSKGQDIKAACGQL 345
>gi|19703861|ref|NP_603423.1| florfenicol resistance protein [Fusobacterium nucleatum subsp.
nucleatum ATCC 25586]
gi|81590892|sp|Q8RFZ9.1|RLMN_FUSNN RecName: Full=Probable dual-specificity RNA methyltransferase RlmN;
AltName: Full=23S rRNA
(adenine(2503)-C(2))-methyltransferase; AltName:
Full=23S rRNA m2A2503 methyltransferase; AltName:
Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=tRNA (adenine(37)-C(2))-methyltransferase;
AltName: Full=tRNA m2A37 methyltransferase
gi|19714019|gb|AAL94722.1| Florfenicol resistance protein [Fusobacterium nucleatum subsp.
nucleatum ATCC 25586]
Length = 358
Score = 209 bits (532), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 123/336 (36%), Positives = 187/336 (55%), Gaps = 17/336 (5%)
Query: 22 GIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSK-FKPLTSTLHSVVDSSDDVTT 80
G+K+ + ++ ++ + +DE +L +L+ K + P + L V S D T
Sbjct: 24 GLKKFYGKEVFIWLHKKITRSFDEMTNLSLKDREILKEKTYIPFFNLLKYQV-SKIDKTE 82
Query: 81 KLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMG 140
K L +L++GG +E V++R+ S K R+TLC+SSQVGC + C+FCATG G
Sbjct: 83 KFLFELEDGGTIETVLLRHKDSKNK--------EIRNTLCVSSQVGCPVKCSFCATGQSG 134
Query: 141 FKSNLSSGEIVEQLVHASRL-----SNIRNVVFMGMGEPLNNYAALVEAVRIMTGLP-FQ 194
+ NLS EI+ Q+ R N+ N+VFMGMGEPL N L +A+ I++
Sbjct: 135 YMRNLSVSEILNQIYTVERRLRKKGENLNNLVFMGMGEPLLNIDNLSKALSIISNENGIN 194
Query: 195 VSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNAL 254
+S ++IT+ST G+V I K D + LA+SLH+ + + R +I+P + FPLE L L
Sbjct: 195 ISKRKITISTSGVVSGIEKILLDKIPIELAISLHSAINEKRDKIIPINKNFPLEDLSAVL 254
Query: 255 KEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSS 314
EYQK ++++I EYI++D N E A+ L + F VVNLIP+N + R S
Sbjct: 255 IEYQKQTKRRITFEYILIDNFNISETDANALADFIHQFDHVVNLIPYNEVEGAEHTRPSV 314
Query: 315 DDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 350
K++ F L+ + T+R++ G DI GACGQL
Sbjct: 315 -KKINKFYIYLKNVRKVNVTLRQEKGSDIDGACGQL 349
>gi|288941010|ref|YP_003443250.1| radical SAM enzyme, Cfr family [Allochromatium vinosum DSM 180]
gi|288896382|gb|ADC62218.1| radical SAM enzyme, Cfr family [Allochromatium vinosum DSM 180]
Length = 365
Score = 209 bits (531), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 130/333 (39%), Positives = 196/333 (58%), Gaps = 26/333 (7%)
Query: 31 IWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHSVVDS--SDDVTTKLLVKLQN 88
++K++ ++ ++D LP + ++L + + L ++ + S D T K +++L +
Sbjct: 35 LFKWMHKHGVVDFDAMTDLPKSLRTVL---LETVEIRLPRILQTHPSADGTVKWVMELVD 91
Query: 89 GGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSG 148
G VE V + P G RST+C+SSQVGC + C FCAT GF NLS
Sbjct: 92 GQRVETVFI--------------PEGKRSTICVSSQVGCALECAFCATARQGFNRNLSVA 137
Query: 149 EIVEQLVHASRL--SNIRNVVFMGMGEPLNNYAALVEAVRIMT-GLPFQVSPKRITVSTV 205
EI+ Q+ HA+R + NVV MGMGEPL N+ A V+A+ +M L + ++ +R+T+ST
Sbjct: 138 EIIGQVWHAARQLGAAPTNVVMMGMGEPLANFEAAVKAMDVMQDDLAYMLAKQRVTLSTS 197
Query: 206 GIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEY-QKNSQQK 264
GIV I + ++ ++LAVSLHAP ++R +++P R +PL +L+ A K Y + ++K
Sbjct: 198 GIVPNIYRLR-EVSDVSLAVSLHAPNDELRDELVPINRKYPLAELIPACKHYVAGDKRRK 256
Query: 265 IFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKI 324
I EY+MLDG+ND HA QL +LLE VNLIPFNP + S F TS D+V +F++
Sbjct: 257 ITWEYVMLDGINDSPAHAKQLIRLLEGVPSKVNLIPFNPF-TGSDFGTSPPDRVETFRER 315
Query: 325 LRGSYNIRTTVRKQMGQDISGACGQLVVNLPDK 357
L S I RK G +I+ ACGQLV + D+
Sbjct: 316 LARS-GIFAMTRKTRGDEIAAACGQLVGRVQDR 347
>gi|296123027|ref|YP_003630805.1| radical SAM protein [Planctomyces limnophilus DSM 3776]
gi|296015367|gb|ADG68606.1| radical SAM enzyme, Cfr family [Planctomyces limnophilus DSM 3776]
Length = 408
Score = 209 bits (531), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 125/327 (38%), Positives = 182/327 (55%), Gaps = 26/327 (7%)
Query: 31 IWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTL--HSVVDSSDDVTTKLLVKLQN 88
I + + N ++ E +LP+ LL + F L S + H + + D T KLL++L +
Sbjct: 83 IQQQIFPNRATQFGEMTNLPAKLRELLAATFTLLPSEVVAHQI---AKDRTEKLLLQLHD 139
Query: 89 GGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSG 148
G VE V+MR D R T+CIS+QVGC MGC FCA+G +G K NL++G
Sbjct: 140 GSLVECVLMREDD--------------RRTICISTQVGCGMGCVFCASGLLGLKRNLTTG 185
Query: 149 EIVEQLVHASRL----SNIRNVVFMGMGEPLNNYAALVEAV-RIMTGLPFQVSPKRITVS 203
EI+EQ++ RL + NVV MGMGEPL N L+ A+ R+ + +RITVS
Sbjct: 186 EILEQVLRLDRLLPADEKLTNVVVMGMGEPLANLKNLLPALDRLTADDGLGLGARRITVS 245
Query: 204 TVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQ 263
TVG+ I + NLAVSLHAP ++R +++P + +E ++ A +Y + +
Sbjct: 246 TVGLPEKIRELAQTGHQFNLAVSLHAPEAELRTKLVPVNKNIGIEAVLEAADDYFAITGR 305
Query: 264 KIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQK 323
++ EY++L G+ND +HA QLG LL++ VNLIP N + + F S + F
Sbjct: 306 RVSYEYVLLGGINDLPEHARQLGHLLKSRIAHVNLIPMNGVKELP-FAEPSAPQTGEFVA 364
Query: 324 ILRGSYNIRTTVRKQMGQDISGACGQL 350
IL S+ + TVRK+ G DI ACGQL
Sbjct: 365 ILE-SFGVPVTVRKRKGADIDAACGQL 390
>gi|220931837|ref|YP_002508745.1| radical SAM enzyme, Cfr family [Halothermothrix orenii H 168]
gi|219993147|gb|ACL69750.1| radical SAM enzyme, Cfr family [Halothermothrix orenii H 168]
Length = 349
Score = 209 bits (531), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 126/342 (36%), Positives = 190/342 (55%), Gaps = 25/342 (7%)
Query: 18 FEKAGIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHSVVDSSDD 77
FEK G ++ ++ N E+ +LP L K LT ++D
Sbjct: 19 FEKRGYPSFRASQLFNWIYRNGVDEFSRMNNLPLVLREELEEK-SYLTKLKIVNKSKAED 77
Query: 78 VTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATG 137
T K L +L++G +E+V + Y+ G R+++CISSQVGC +GC FCATG
Sbjct: 78 GTVKYLWELKDGETIESVFIPYE-------------GSRNSVCISSQVGCSLGCKFCATG 124
Query: 138 TMGFKSNLSSGEIVEQLVHASR-LSN-------IRNVVFMGMGEPLNNYAALVEAVRIMT 189
G NL+ GEIV+Q++ + +SN + NVVFMGMGEPL N ++++A+ IM
Sbjct: 125 LTGLIRNLTPGEIVDQVLQIQKEISNDKYGSPRVSNVVFMGMGEPLANMKSVLKAIEIMN 184
Query: 190 GLP-FQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLE 248
+ ++ITVST G+V I + + LA+SL+AP +R ++MP R FPLE
Sbjct: 185 DSKGLNIGKRKITVSTSGLVPQIKELADKKLQIVLAISLNAPNNALRDKLMPINRKFPLE 244
Query: 249 KLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVS 308
KL+ A++ Y + + +++ EY++L G ND +HA QL LL VNLIPFNP+ +
Sbjct: 245 KLLEAVRYYTEVTNRRVTFEYVLLKGTNDSPEHAFQLVNLLSDIHGHVNLIPFNPVQE-T 303
Query: 309 QFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 350
+F+ S + V+ F+ IL + + TTVR++ G I ACGQL
Sbjct: 304 EFKRPSKETVNRFKDILINN-GVETTVRQERGTRIEAACGQL 344
>gi|336179481|ref|YP_004584856.1| ribosomal RNA large subunit methyltransferase N [Frankia symbiont
of Datisca glomerata]
gi|334860461|gb|AEH10935.1| Ribosomal RNA large subunit methyltransferase N [Frankia symbiont
of Datisca glomerata]
Length = 413
Score = 209 bits (531), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 122/301 (40%), Positives = 170/301 (56%), Gaps = 33/301 (10%)
Query: 78 VTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATG 137
T K L + +G +E+V+MRY R+T+C+SSQ GC MGC FCATG
Sbjct: 120 ATHKTLWRAFDGVLIESVLMRYPD--------------RATVCVSSQAGCGMGCPFCATG 165
Query: 138 TMGFKSNLSSGEIVEQLVHASRL----------SNIRNVVFMGMGEPLNNYAALVEAVRI 187
G NLS+ EIVEQ+V A+ + + NVVFMGMGEPL NYA +V A+R+
Sbjct: 166 QGGLTRNLSAAEIVEQVVAAAGAIARGELAGGPARLSNVVFMGMGEPLANYATVVAALRV 225
Query: 188 MTGLP---FQVSPKRITVSTVGIVHAINKFH-SDLPGLNLAVSLHAPVQDVRCQIMPAAR 243
+T P +S + ITVSTVG+V AI + + LP + LAVSLHAP ++R ++P R
Sbjct: 226 LTAPPPAGLGLSARSITVSTVGLVPAIRRLAGAGLP-VTLAVSLHAPDDELRDSLVPVNR 284
Query: 244 AFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNP 303
+P+ +++ A EY + + +++ IEY ++D VND+ + A L LL VNLIP NP
Sbjct: 285 RWPVAEVLTAAWEYAETTGRRVSIEYALIDDVNDQPERADALADLLVGRLAHVNLIPLNP 344
Query: 304 IGSVS-QFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDKISAKS 362
VS Q ++ + LRG I TVR G+DI+ ACGQL + P +S
Sbjct: 345 TRGVSWQASERRREREFVRRLRLRG---ITATVRDTRGRDIAAACGQLAADAPTGLSGPG 401
Query: 363 T 363
T
Sbjct: 402 T 402
>gi|220903723|ref|YP_002479035.1| ribosomal RNA large subunit methyltransferase N [Desulfovibrio
desulfuricans subsp. desulfuricans str. ATCC 27774]
gi|219868022|gb|ACL48357.1| radical SAM enzyme, Cfr family [Desulfovibrio desulfuricans subsp.
desulfuricans str. ATCC 27774]
Length = 386
Score = 209 bits (531), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 133/347 (38%), Positives = 197/347 (56%), Gaps = 29/347 (8%)
Query: 31 IWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHSVVDSSDDVTTKLLVKLQNGG 90
+W+++ + ++D ++ LL +K + + S V+ S D TTK L++L++G
Sbjct: 52 LWQWIWQRMARDFDTMTNISRPCRELLAAKACIVWPEV-SAVEESRDGTTKFLLRLEDGA 110
Query: 91 FVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEI 150
+E V++ DS R G R T C+S QVGC MGC FC+TG MGF+ N++ GEI
Sbjct: 111 QIETVLIPSDS---------REGVRRWTQCLSCQVGCTMGCTFCSTGQMGFERNMTMGEI 161
Query: 151 VEQLVHA------SRLSN--IRNVVFMGMGEPLNNYAALVEAVRIMT---GLPFQVSPKR 199
+ Q++ A +RL +RN+VFMGMGEPL N ++ ++ + GL F SP+R
Sbjct: 162 LGQILVAREHLGDTRLHWPILRNLVFMGMGEPLLNLKEVMRSLESLNNDKGLGF--SPRR 219
Query: 200 ITVSTVGIVHAINKFHSDLPGLN-LAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQ 258
ITVST GI + + GL LAVSLHAP Q VR +IMP A + L LM ALK Y
Sbjct: 220 ITVSTCGIEKGLKELGES--GLAFLAVSLHAPNQAVRERIMPKAARWRLNDLMAALKSYP 277
Query: 259 KNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKV 318
+++ I EY+ML GVND +HA +L L+ + +N+I +N S ++ S++++
Sbjct: 278 LKTREHITFEYLMLGGVNDSLEHARELAPLVSAVKGKLNIIVYNA-AEGSPYQAPSEERI 336
Query: 319 SSFQKILRGSYNIRTTVRKQMGQDISGACGQL-VVNLPDKISAKSTP 364
+F+K L S +I +RK GQDI ACGQL D +A + P
Sbjct: 337 LAFEKYL-WSKDITAIIRKSKGQDIKAACGQLKAARQKDTAAADADP 382
>gi|409197663|ref|ZP_11226326.1| ribosomal RNA large subunit methyltransferase N [Marinilabilia
salmonicolor JCM 21150]
Length = 345
Score = 209 bits (531), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 120/310 (38%), Positives = 176/310 (56%), Gaps = 23/310 (7%)
Query: 44 DEFPSLPSAAYSLLRSKFKPLTSTLHSVVDSSDDVTTKLLVKLQNGGFVEAVIMRYDSSL 103
D+ +L A L+ K+ + S V +S D T K L Q G F+EA +
Sbjct: 42 DDMTNLSKDARDRLKEKY-IIGRVAPSKVQASVDGTKKYLYPAQKGLFIEAAYI------ 94
Query: 104 GKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSNI 163
P R TLCISSQ+GCKMGC FC TG GF+ L++GEIV Q++ +
Sbjct: 95 --------PEKERHTLCISSQIGCKMGCLFCMTGKQGFQGQLTAGEIVNQVISLPESDQL 146
Query: 164 RNVVFMGMGEPLNNYAALVEAVRIMT---GLPFQVSPKRITVSTVGIVHAINKFHSDLPG 220
N+V+MGMGEP++N +++++ I T G+ + SP+R VST+G+ A+ +F +
Sbjct: 147 TNIVYMGMGEPMDNVENVLKSLEIFTSDWGMGW--SPRRFNVSTIGVEPAMRRFIEE-SD 203
Query: 221 LNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQ 280
+LA+SLH P + R ++MP + +P+E+++++LKEY Q++I EYIM DGVND
Sbjct: 204 AHLAISLHTPFNEERKKLMPIEQVYPIEEVIDSLKEYDFGRQRRISFEYIMFDGVNDTPA 263
Query: 281 HAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMG 340
H L KLL + +NLI F+PI S R SSD+K+ F L + TT+R+ G
Sbjct: 264 HVKGLTKLLNGIRCRINLIRFHPIPD-SPLRGSSDEKIKWFSDQL-NRKGLTTTIRRSRG 321
Query: 341 QDISGACGQL 350
+DI ACG L
Sbjct: 322 EDIYAACGLL 331
>gi|71908601|ref|YP_286188.1| hypothetical protein Daro_2988 [Dechloromonas aromatica RCB]
gi|123760407|sp|Q47BR3.1|RLMN_DECAR RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|71848222|gb|AAZ47718.1| 23S rRNA m(2)A-2503 methyltransferase [Dechloromonas aromatica RCB]
Length = 364
Score = 208 bits (530), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 137/362 (37%), Positives = 189/362 (52%), Gaps = 34/362 (9%)
Query: 9 FDGGIIRAEFEKAGIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTL 68
FDG + A F + G K + +++ + ++D + + LR K K
Sbjct: 8 FDGESLTAWFAEQGEKPFRAKQVLRWIHRSGVADFDAMTDIAKS----LREKLKAKAVVA 63
Query: 69 HSVVDS---SDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQV 125
V S SDD T K L+ + NG VE V + P R TLCIS+Q
Sbjct: 64 PPAVVSDKLSDDGTRKFLIDVGNGNAVETVFI--------------PEDDRGTLCISTQA 109
Query: 126 GCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN--------IRNVVFMGMGEPLNN 177
GC + C FC+TG GF NLS EI+ QL A+ I NVV MGMGEPL N
Sbjct: 110 GCALDCAFCSTGKQGFNRNLSVAEIIGQLWQANHALGAVHGDERVISNVVLMGMGEPLAN 169
Query: 178 YAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRC 236
+ V A+++M + +S +RITVST G+V +++ + P + LAVSLHAP +R
Sbjct: 170 FENSVAALKLMLDDNAYGLSRRRITVSTSGLVPVMDRLGDECP-VALAVSLHAPNDKLRD 228
Query: 237 QIMPAARAFPLEKLMNALKEY-QKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVV 295
Q++P + +PL++LM A + Y +K + I EYIMLDG+ND + HA +L L+++
Sbjct: 229 QLVPINQKYPLKELMAACQRYLEKAPRDFITFEYIMLDGINDTDAHARELLALVKSVHCK 288
Query: 296 VNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLP 355
NLIPFNP S FR S ++V F IL + I TT RK G DI ACGQL +
Sbjct: 289 FNLIPFNPFPG-SPFRRSPAERVRHFADILMQA-GIVTTTRKTRGDDIDAACGQLAGQVQ 346
Query: 356 DK 357
DK
Sbjct: 347 DK 348
>gi|402299716|ref|ZP_10819295.1| ribosomal RNA large subunit methyltransferase N [Bacillus
alcalophilus ATCC 27647]
gi|401725117|gb|EJS98426.1| ribosomal RNA large subunit methyltransferase N [Bacillus
alcalophilus ATCC 27647]
Length = 359
Score = 208 bits (530), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 122/342 (35%), Positives = 189/342 (55%), Gaps = 31/342 (9%)
Query: 22 GIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHSVVDSSDDVTTK 81
G K+ +W ++ ++ E ++ +LL F T +H + S D T K
Sbjct: 22 GHKKFRAQQVWDWLYRKRVTDFSEMTNVNKDCLALLEENFAFETMNVH-LQQESKDGTIK 80
Query: 82 LLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGF 141
L+KL +G +E V+M++ L ++C+++QVGC +GC+FCA+G +
Sbjct: 81 FLLKLSDGNLIETVLMKHKYGL--------------SVCVTTQVGCNIGCSFCASGLLRK 126
Query: 142 KSNLSSGEIVEQLVHASRLSNIRN-------VVFMGMGEPLNNYAALV---EAVRIMTGL 191
+L+SGEIVEQ++ + RN +V MG+GEP +N+ +V E V+ GL
Sbjct: 127 SRDLTSGEIVEQIMKVQLHLDTRNNDERVSHIVVMGIGEPFDNFTNMVDFLEIVKDQKGL 186
Query: 192 PFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLM 251
+ + ITVST GIV I +F +NLA+SLHAP ++R QIM RAFP+EKLM
Sbjct: 187 A--IGARHITVSTSGIVPKIYEFADLKLQVNLAISLHAPNNELRTQIMKVNRAFPIEKLM 244
Query: 252 NALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQ---VVVNLIPFNPIGSVS 308
+++ Y + S ++I EYI+L GVND+++HA +L L+ T + VNLIP+NP+
Sbjct: 245 DSVDYYLEKSNRRITFEYILLKGVNDQKEHALELANLIGTSRRKLTYVNLIPYNPVDEHG 304
Query: 309 QFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 350
Q++ S ++ + F L+ I VR + G DI ACGQL
Sbjct: 305 QYQRSDNEDIRIFFDTLKKK-GINCGVRLEHGTDIDAACGQL 345
>gi|330790726|ref|XP_003283447.1| hypothetical protein DICPUDRAFT_25816 [Dictyostelium purpureum]
gi|325086712|gb|EGC40098.1| hypothetical protein DICPUDRAFT_25816 [Dictyostelium purpureum]
Length = 390
Score = 208 bits (530), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 128/348 (36%), Positives = 194/348 (55%), Gaps = 36/348 (10%)
Query: 17 EFEKAGIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTL--HSVVDS 74
+FEK ++ + +WK + + +F + S++ FK T T+ H +
Sbjct: 63 KFEKLNFPKYSVDQVWKLMYNKGIDQIKDFNLISKERKSIMEENFKLDTGTITKHQL--- 119
Query: 75 SDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFC 134
S D T K L+ +G VE+V + P R TLC+SSQVGC C FC
Sbjct: 120 SVDGTRKFLISF-DGDEVESVFI--------------PESSRGTLCVSSQVGCTFACTFC 164
Query: 135 ATGTMGFKSNLSSGEIVEQLVHASRLSN---------IRNVVFMGMGEPLNNYAALVEAV 185
TGT FK NL++ EIV Q+V A +L N + N+VFMG GEP NY + +A+
Sbjct: 165 FTGTQKFKRNLTANEIVAQVVAARKLLNDFNASEERLLTNIVFMGQGEPFYNYRNVKKAI 224
Query: 186 RIMT---GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAA 242
I+T GL + +ITVST G+V I + +D PG+ LA+SLH+P +VR +I+ A
Sbjct: 225 SIITDSNGLA--IGKSKITVSTSGVVPIIERLGTDFPGIGLAISLHSPNDEVRSKIVTAN 282
Query: 243 RAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFN 302
R +P+E+L+ + ++ K ++ +I +EY+ L V+D EQ A L L + F +VN+IPFN
Sbjct: 283 RQWPIEELVQSCIKFSKTTKSRITLEYVPLQDVHDTEQDALDLIPLCKRFPSLVNIIPFN 342
Query: 303 PIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 350
P S +S+++++ F IL S N++TT+R+ G+DI ACGQL
Sbjct: 343 PWPG-SPHESSTNNQIQIFANILE-SNNVKTTIRQSRGRDIMAACGQL 388
>gi|374580707|ref|ZP_09653801.1| 23S rRNA m2A2503 methyltransferase [Desulfosporosinus youngiae DSM
17734]
gi|374416789|gb|EHQ89224.1| 23S rRNA m2A2503 methyltransferase [Desulfosporosinus youngiae DSM
17734]
Length = 351
Score = 208 bits (530), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 117/343 (34%), Positives = 190/343 (55%), Gaps = 26/343 (7%)
Query: 18 FEKAGIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHSVVDSSDD 77
++ G K+ +W ++ + E + LL F + T H + S D
Sbjct: 18 LQEQGHKKSRALQVWDWLYRKRVTNFSEMTDVRQECRELLAGHFVTQSLTEH-IKQESAD 76
Query: 78 VTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATG 137
T K L KLQ+ +E V+MR+ L ++C+++QVGC +GC+FCA+G
Sbjct: 77 GTIKYLFKLQDDNLIETVLMRHKFGL--------------SVCVTTQVGCNIGCSFCASG 122
Query: 138 TMGFKSNLSSGEIVEQLVHAS-------RLSNIRNVVFMGMGEPLNNYAALVEAVRIMTG 190
+ + +LSSGEIVEQ++ + + +VV MG+GEP +NYA + +A+RI+T
Sbjct: 123 LLSKQRDLSSGEIVEQIMKVQLDMDKGHKGEKVSHVVVMGIGEPFDNYANVTDALRIITD 182
Query: 191 LPFQVSPKR-ITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEK 249
P R ITVST G+ I +F +NLA+SLHAP +R QIM R FP+EK
Sbjct: 183 HKGLAIPGRHITVSTSGLADKIYEFADSDLKVNLAISLHAPTNQLRGQIMKINRVFPIEK 242
Query: 250 LMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQ--VVVNLIPFNPIGSV 307
L+ AL+ Y +++++ +EYI++ +ND+ +HA QL +L + + VNLIP+NP+
Sbjct: 243 LIRALEYYLNKTKRRVTLEYILIKDLNDQREHALQLCQLTANMRQLINVNLIPYNPVDEH 302
Query: 308 SQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 350
Q++ S + + +F +L+ ++ ++R + G+DI ACGQL
Sbjct: 303 QQYQRSDHETMLAFYDVLKKQ-GMKCSIRLEHGRDIDAACGQL 344
>gi|381183406|ref|ZP_09892143.1| ribosomal RNA large subunit methyltransferase N [Listeriaceae
bacterium TTU M1-001]
gi|380316698|gb|EIA20080.1| ribosomal RNA large subunit methyltransferase N [Listeriaceae
bacterium TTU M1-001]
Length = 390
Score = 208 bits (530), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 115/345 (33%), Positives = 190/345 (55%), Gaps = 30/345 (8%)
Query: 18 FEKAGIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHSVVDSSDD 77
F G K+ +W+++ +DE ++P + +L+ F L + +V S D
Sbjct: 18 FLDKGQKKFRATQVWEWLYRKRVGSFDEMTNVPKESIEILKENF-VLNNLEEQIVQKSSD 76
Query: 78 VTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATG 137
T K L KL++G +E V+M ++ L ++C+++QVGC +GC FCA+G
Sbjct: 77 GTIKYLFKLKDGNLIETVLMSHEYGL--------------SVCVTTQVGCNIGCTFCASG 122
Query: 138 TMGFKSNLSSGEIVEQLVHASRLSNIRN-------VVFMGMGEPLNNYAALVEAVRIMT- 189
+ + +L +GEIV Q+++ R + R+ +V MG+GEP +NY ++ +R++
Sbjct: 123 LLKKQRDLDAGEIVSQIMNVQRYLDERDNDARVSHIVVMGIGEPFDNYDNVMSFLRVVNH 182
Query: 190 --GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPL 247
GL + + ITVST G+ I F ++ +NLAVSLHAP D+R +IM R F +
Sbjct: 183 DKGLA--IGARHITVSTSGLAPRIKDFANEDFQVNLAVSLHAPNNDIRTKIMRINRTFSI 240
Query: 248 EKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQ--VVVNLIPFNPIG 305
E LM A++ Y + + +++ EYIML VND Q A +L LL+ + VNLIP+NP+
Sbjct: 241 ETLMEAIEYYIEKTNRRVTYEYIMLRDVNDSRQEAQELANLLKNHKKLAYVNLIPYNPVD 300
Query: 306 SVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 350
+Q+ S + V +F +L+ + + +R++ G DI ACGQL
Sbjct: 301 EHNQYERSRKEDVLAFYDVLKKN-GVNCVIRREHGTDIDAACGQL 344
>gi|365093283|ref|ZP_09330349.1| radical SAM protein [Acidovorax sp. NO-1]
gi|363414457|gb|EHL21606.1| radical SAM protein [Acidovorax sp. NO-1]
Length = 373
Score = 208 bits (530), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 143/371 (38%), Positives = 199/371 (53%), Gaps = 40/371 (10%)
Query: 9 FDGGIIRAEFEKAGIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTL 68
FD + A ++ G K+ +++++ + ++D L A LR K K
Sbjct: 8 FDLDGLAAFCQQLGEKRFRATQLFRWIHQRGASDFDAMSDLAKA----LRDKLKGCARVE 63
Query: 69 HSVVDS---SDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQV 125
V S S D T K L + +G VEAV + P R TLC+SSQ
Sbjct: 64 ALPVISEHVSTDGTVKWLFDVGDGNAVEAVFI--------------PEDDRGTLCVSSQA 109
Query: 126 GCKMGCNFCATGTMGFKSNLSSGEIVEQLVHAS-----RLSN----IRNVVFMGMGEPLN 176
GC +GC FC+TG GF NL++GEIV QL A RL + I NVV MGMGEPL
Sbjct: 110 GCAVGCRFCSTGHQGFSRNLTTGEIVAQLWFAEHSLRQRLQSGDRVISNVVMMGMGEPLQ 169
Query: 177 NYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVR 235
NY+ALV A+R+M + +S +R+TVST G+V +++ D P + LAVSLHAP +R
Sbjct: 170 NYSALVPALRVMLDDHGYGLSRRRVTVSTSGVVPMMDRLALDCP-VALAVSLHAPNDPLR 228
Query: 236 CQIMPAARAFPLEKLMNALKEYQKNSQQK-IFIEYIMLDGVNDEEQHAHQLGKLLE---- 290
++P R +P+E+LM A Y ++ + I EY MLDGVND+ +HA QL +L++
Sbjct: 229 DNLVPLNRKYPIEELMAACNRYLAHAPRDFITFEYCMLDGVNDQVEHARQLIELVKPARG 288
Query: 291 -TFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQ 349
+ NLIPFNP + R S ++V +F K+L I TTVRK G DI ACGQ
Sbjct: 289 AGVRCKFNLIPFNPFPASGLLR-SPQNQVLAFAKVL-SEAGIVTTVRKTRGDDIDAACGQ 346
Query: 350 LVVNLPDKISA 360
L ++ D+ A
Sbjct: 347 LAGDVKDRTRA 357
>gi|325108721|ref|YP_004269789.1| 23S rRNA m(2)A-2503 methyltransferase [Planctomyces brasiliensis
DSM 5305]
gi|324968989|gb|ADY59767.1| 23S rRNA m(2)A-2503 methyltransferase [Planctomyces brasiliensis
DSM 5305]
Length = 358
Score = 208 bits (530), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 127/337 (37%), Positives = 184/337 (54%), Gaps = 30/337 (8%)
Query: 31 IWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTL--HSVVDSSDDVTTKLLVKLQN 88
I++++ W+E LP+ + L +F S + HSV + D T KLL+KL++
Sbjct: 34 IFRWIYARRAQSWEEMNDLPAKLRTALAEQFSLFNSEVETHSV---ATDRTEKLLLKLRD 90
Query: 89 GGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSG 148
G FVE V+MR R+T+CIS+QVGC MGC FCA+G G NL +
Sbjct: 91 GEFVECVLMREPD--------------RNTICISTQVGCGMGCVFCASGLAGLTRNLQTA 136
Query: 149 EIVEQLVHASRLSN----IRNVVFMGMGEPLNNYAALVEAV-RIMTGLPFQVSPKRITVS 203
EI+EQ+ RL + + NVV MGMGEPL N L+ A+ R+ L + +RITVS
Sbjct: 137 EILEQVARLDRLQSDDEKLTNVVVMGMGEPLANLKQLLPALERMQHALGLNLGVRRITVS 196
Query: 204 TVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQ 263
TVG+ I + + NLAVSLHAP +R +I+P L+ +++A EY + + +
Sbjct: 197 TVGLPDRIRQLAAHGKPYNLAVSLHAPNDKLRDEIVPVNDKIGLDAVLSAADEYFETTGR 256
Query: 264 KIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQK 323
++ EY++L G+ND +HAH+L ++L VNLIP N + +S SS + F
Sbjct: 257 RVTYEYVLLKGINDSLEHAHELAEVLAGRNAHVNLIPMNAVSLLS-IGGSSPQQARQFAA 315
Query: 324 ILRGSYNIRTTVRKQMGQDISGACGQL----VVNLPD 356
IL + T+RK+ G DI ACGQL V +PD
Sbjct: 316 ILEQA-GTAATIRKRKGADIDAACGQLRLPKVQQMPD 351
>gi|302878623|ref|YP_003847187.1| radical SAM enzyme, Cfr family [Gallionella capsiferriformans ES-2]
gi|302581412|gb|ADL55423.1| radical SAM enzyme, Cfr family [Gallionella capsiferriformans ES-2]
Length = 363
Score = 208 bits (530), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 124/302 (41%), Positives = 174/302 (57%), Gaps = 27/302 (8%)
Query: 75 SDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFC 134
SDD T K L+ + +G VEAV + P R TLCISSQ GC + C+FC
Sbjct: 72 SDDGTRKWLLSVGSGNAVEAVYI--------------PESARGTLCISSQAGCALDCSFC 117
Query: 135 ATGTMGFKSNLSSGEIVEQLVHASRLSN--------IRNVVFMGMGEPLNNYAALVEAVR 186
+TG GF NL+ EI+ QL A+ + NVV MGMGEPL N+ V A+R
Sbjct: 118 STGKQGFNRNLTVAEIIGQLWWANHQLGKNSEGNWPVSNVVMMGMGEPLLNFDNTVSALR 177
Query: 187 IM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAF 245
+M + +S +R+TVST GIV A+++ + P + LAVSLHAP +R +++P + +
Sbjct: 178 LMLDDQAYGLSRRRVTVSTSGIVPAMDRLREECP-VALAVSLHAPNDALRDKLVPVNQKY 236
Query: 246 PLEKLMNALKEY-QKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPI 304
PL++L+ A + Y +K + I EY+MLDGVND QHAH+L +L++ NLIPFNP
Sbjct: 237 PLKELLGACQRYLEKAPRDFITFEYVMLDGVNDTVQHAHELVRLVKDTPCKFNLIPFNPF 296
Query: 305 GSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDKISAKSTP 364
+S ++ S D + F+ +L + +I TT RK G DI+ ACGQL + DK T
Sbjct: 297 -PLSPYKRSRPDAIQRFRDVLMQA-DIITTTRKTRGDDIAAACGQLAGQVLDKTRRTGTR 354
Query: 365 PV 366
PV
Sbjct: 355 PV 356
>gi|87311004|ref|ZP_01093129.1| hypothetical protein DSM3645_15540 [Blastopirellula marina DSM
3645]
gi|87286294|gb|EAQ78203.1| hypothetical protein DSM3645_15540 [Blastopirellula marina DSM
3645]
Length = 361
Score = 208 bits (530), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 123/352 (34%), Positives = 192/352 (54%), Gaps = 22/352 (6%)
Query: 7 SVFDGGIIRAEFEKAGIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTS 66
S+ D + A ++ G+ H + + +++ + + LP+AA ++ +
Sbjct: 11 SIHDAAAVEAMRKRLGLDPHRLRRLRTRLLKLQGSDEEALQELPAAARDAFAAEIRFHEL 70
Query: 67 TLHSVVDSSDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVG 126
TL DS D +KLL + +G +E+VI+R + R+ LC+SSQVG
Sbjct: 71 TLDQRFDSQLDGASKLLFRTDDGLLLESVILRVATG-------------RTALCVSSQVG 117
Query: 127 CKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRL-----SNIRNVVFMGMGEPLNNYAAL 181
C C+FCATG MG +LS+ +I++Q+V A++L +RN+VFMGMGEP +N AA+
Sbjct: 118 CAANCDFCATGKMGIARSLSAPQILDQVVQANQLLKPEGRKVRNIVFMGMGEPFHNTAAV 177
Query: 182 VEAV-RIMTGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMP 240
E + ++++ F SP+R VSTVG+ A+ F P +NLA+SLH+ +Q R +I+P
Sbjct: 178 HETLEKLVSPHGFDQSPRRTLVSTVGLPSAMIAFARKFPKVNLALSLHSAIQSRRTEIIP 237
Query: 241 AARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIP 300
A F L++L AL + QQ I IEY+ML G+ND + L L V +NLIP
Sbjct: 238 LAAKFDLKELRAALDQVAAVQQQSIMIEYLMLRGINDGPEDRAALADYLRGLPVHINLIP 297
Query: 301 FNPIGSVSQFRTSSDDKVSSFQKILRGS-YNIRTTVRKQMGQDISGACGQLV 351
+N + + +S + +F LRG Y + T+R +G D+ ACGQLV
Sbjct: 298 YNRVDAAPHLEGTSKEDREAFGAALRGEGYTV--TIRYSLGADVDAACGQLV 347
>gi|337750136|ref|YP_004644298.1| protein RlmN [Paenibacillus mucilaginosus KNP414]
gi|336301325|gb|AEI44428.1| RlmN [Paenibacillus mucilaginosus KNP414]
Length = 358
Score = 208 bits (530), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 122/329 (37%), Positives = 188/329 (57%), Gaps = 32/329 (9%)
Query: 32 WKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHSVVD-SSDDVTTKLLVKLQNGG 90
W YV N +DE +LP LR +F +T LH V S D T K L +L +
Sbjct: 42 WLYVKRISN--FDEMTNLPKTLRDKLREQFDFVT--LHEVAHYRSKDGTVKFLFELADKN 97
Query: 91 FVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEI 150
+E V+M+++ +++C+++QVGC++GC FCA+ G K NL+ GEI
Sbjct: 98 AIETVVMKHNYG--------------NSICVTTQVGCRIGCTFCASTLGGLKRNLTPGEI 143
Query: 151 VEQLVHASRL-----SNIRNVVFMGMGEPLNNYAALVEAVRIM---TGLPFQVSPKRITV 202
+ Q+V A +L + ++V MG+GEP NY A++ +R+M GL + + ITV
Sbjct: 144 IAQVVKAQQLLDETGERVSSIVIMGIGEPFENYDAVMTFLRVMIHPKGL--NIGQRHITV 201
Query: 203 STVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQ 262
ST GIV I KF + +NLA+S+HAP +R ++MP R FP L+ A K Y +
Sbjct: 202 STSGIVPNIYKFAEEETQINLAISIHAPNDALRSKLMPVNRRFPFADLIEACKYYVGKTG 261
Query: 263 QKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVV-VNLIPFNPIGSVSQFRTSSDDKVSSF 321
++I EY ++ GVND+ +HA +L ++L++F + VNLIP N + + RT +D + +F
Sbjct: 262 RRITFEYALMGGVNDQPEHAEELAQVLQSFPMAHVNLIPVNFVSERNFVRTPRND-IFTF 320
Query: 322 QKILRGSYNIRTTVRKQMGQDISGACGQL 350
Q+IL + I T+R++ G DI+ ACGQL
Sbjct: 321 QRILEKN-KINATIRREQGSDIAAACGQL 348
>gi|403049734|ref|ZP_10904218.1| radical SAM enzyme, Cfr family protein [SAR86 cluster bacterium
SAR86D]
Length = 361
Score = 208 bits (529), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 118/297 (39%), Positives = 176/297 (59%), Gaps = 24/297 (8%)
Query: 72 VDSSDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGC 131
+ S++ T K L+KL +G VE V + P R TLCISSQ GC + C
Sbjct: 73 IHKSEEGTIKYLIKLTSGSMVEMVRI--------------PEKKRITLCISSQAGCALQC 118
Query: 132 NFCATGTMGFKSNLSSGEIVEQL----VHASRLSNIRNVVFMGMGEPLNNYAALVEAVRI 187
FCATG GF+SNLS+ EI+ Q+ + S + N+VFMGMGEP+ N+ ++E+ +I
Sbjct: 119 TFCATGAQGFESNLSANEIIGQVWLANFYNSSQQKVTNIVFMGMGEPMLNFKPVIESAKI 178
Query: 188 MTG-LPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFP 246
M + + +S KRIT+ST GI IN+ S++ ++LA+SLHAP+ +R +I+P + +P
Sbjct: 179 MKDQMAYSLSRKRITISTSGITPQINQLSSEI-DVSLAISLHAPIDSLRDKIVPINKKYP 237
Query: 247 LEKLMNALKEYQKNSQQK--IFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPI 304
+++L+ + K+Y + + K I IEYI++DG+ND A +L +LL +NLIPFNP
Sbjct: 238 IKELIKSCKKYLADYEGKRSITIEYILIDGINDSIDFAKKLARLLSDVSCKINLIPFNPF 297
Query: 305 GSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDKISAK 361
S ++ SS + F+ IL S TT+R G + GACGQLV L + I +K
Sbjct: 298 EG-SSYKRSSQKNIEQFKSILM-SKGFITTLRVTRGDAVDGACGQLVGKLNNSIKSK 352
>gi|253574078|ref|ZP_04851420.1| cfr family radical SAM enzyme [Paenibacillus sp. oral taxon 786
str. D14]
gi|251846555|gb|EES74561.1| cfr family radical SAM enzyme [Paenibacillus sp. oral taxon 786
str. D14]
Length = 351
Score = 208 bits (529), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 122/339 (35%), Positives = 188/339 (55%), Gaps = 28/339 (8%)
Query: 22 GIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHSVVDSSDDVTTK 81
G K+ ++W+ + +D + +LL+ +F T H V S D T K
Sbjct: 22 GHKRGRAEMVWEGLYRKRVTAFDAMEGVHPECLALLKEQFVIETLEEH-VRQESIDGTIK 80
Query: 82 LLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGF 141
L +LQ+G +E V+MR+ L ++C+++QVGC +GC+FCA+G +
Sbjct: 81 FLFRLQDGNLIETVLMRHKFGL--------------SVCVTTQVGCNIGCSFCASGLLKK 126
Query: 142 KSNLSSGEIVEQLV----HASRL---SNIRNVVFMGMGEPLNNYAALVEAVRIM---TGL 191
+L+SGEIVEQ++ H R + ++V MG+GEP +NY + + +R++ GL
Sbjct: 127 SRDLTSGEIVEQVMKVQMHLDRQGKGERVSHIVVMGIGEPFDNYDNMADFLRVIQDPKGL 186
Query: 192 PFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLM 251
+ P+ ITVST G+ I +F +NLAVSLHAP ++R +IM +A P+EKLM
Sbjct: 187 A--IGPRHITVSTSGLADKIIEFADSDLQVNLAVSLHAPNNELRTRIMKINKAIPIEKLM 244
Query: 252 NALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFR 311
A+ Y + + +++ IEYI+L GVND +HA +L LL V VNLIP+NP+ SQ++
Sbjct: 245 AAIDYYLERTNRRLTIEYILLKGVNDGTEHAQELADLLGDRFVNVNLIPYNPVDEHSQYQ 304
Query: 312 TSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 350
S V +F L+ + +VR + G DI ACGQL
Sbjct: 305 RSEQKSVLAFYDALK-KRGLSVSVRLEHGADIDAACGQL 342
>gi|424867267|ref|ZP_18291075.1| Putative radical SAM family protein [Leptospirillum sp. Group II
'C75']
gi|387222302|gb|EIJ76760.1| Putative radical SAM family protein [Leptospirillum sp. Group II
'C75']
Length = 379
Score = 208 bits (529), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 123/351 (35%), Positives = 189/351 (53%), Gaps = 37/351 (10%)
Query: 33 KYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHSVVDSSDDVTTKLLVKLQNGGFV 92
+++ EW+ +LP ++ L+ + S D T KLL++L G +
Sbjct: 35 QWIFRQNVSEWERMKNLPGDDRRRWSDRWD-LSLPIVRDEKRSRDGTRKLLLELSGGALI 93
Query: 93 EAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVE 152
E+V++ D R+TLC+SSQVGC +GC FC T MG NLS EI+
Sbjct: 94 ESVLIPRDD--------------RATLCVSSQVGCGIGCRFCRTAEMGLVRNLSVSEILG 139
Query: 153 QLVHASRL-------------------SNIRNVVFMGMGEPLNNYAALVEAVRIMTGLP- 192
Q+ A+RL S + ++VFMGMGEPL N+ LV ++ ++T
Sbjct: 140 QVRVANRLLAEAPVRDMSKETDPTPFLSRVNHLVFMGMGEPLANFDHLVRSLAVLTSPEG 199
Query: 193 FQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMN 252
F +S +RITVST G+ I + +NLAVSL AP +++R +MP +R P+ +++
Sbjct: 200 FGLSSRRITVSTSGLAGRIRDLGTSGIAVNLAVSLSAPTEELRENLMPISRHHPIRSILS 259
Query: 253 ALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRT 312
A + Y ++Q+I EY++L GVND E A +L +LL F+ VNLIPFNP S +
Sbjct: 260 ACRAYPLRNRQRITFEYVLLGGVNDGEGQARELARLLAPFRSKVNLIPFNPYPG-SPYHR 318
Query: 313 SSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDKISAKST 363
D+V FQ+IL+ + + T+R G+DI GACGQL ++ ++ +S+
Sbjct: 319 PDKDRVRRFQEILQ-AKGVTATLRTTRGEDILGACGQLALSPSPALTMESS 368
>gi|255021262|ref|ZP_05293311.1| Ribosomal RNA large subunit methyltransferase N [Acidithiobacillus
caldus ATCC 51756]
gi|254969273|gb|EET26786.1| Ribosomal RNA large subunit methyltransferase N [Acidithiobacillus
caldus ATCC 51756]
Length = 357
Score = 208 bits (529), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 117/278 (42%), Positives = 164/278 (58%), Gaps = 21/278 (7%)
Query: 77 DVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCAT 136
D T K L++L +G +E V + P R TLCISSQVGC + C+FCAT
Sbjct: 74 DETRKWLLRLPDGNAIETVFI--------------PEEDRGTLCISSQVGCSLACSFCAT 119
Query: 137 GTMGFKSNLSSGEIVEQLVHASR---LSNIRNVVFMGMGEPLNNYAALVEAVRIM-TGLP 192
G G NLSS EIV Q+ A R L I NVVFMGMGEPL N ++ +R++
Sbjct: 120 GAQGLNRNLSSHEIVAQVRVARRHLGLDAITNVVFMGMGEPLLNLKQVIPVIRLLLDDFA 179
Query: 193 FQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMN 252
+ +S +R+TVST G++ + + + P +NLA+SLHA D+R +++P R +PL +LM
Sbjct: 180 YGLSSRRVTVSTAGVLPGLEQLGRETP-VNLAISLHASRNDLRDELVPINRHYPLAQLMA 238
Query: 253 ALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRT 312
A + Y +++I EY+MLDGVND + A L +LL +VNLIPFNP S +R
Sbjct: 239 ACRSYPLPPRRRITFEYVMLDGVNDSDADARALVRLLRGLPALVNLIPFNPFPG-SPYRR 297
Query: 313 SSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 350
SS ++ +F++I+ S I T R+ G DI+ ACGQL
Sbjct: 298 SSLARIDAFREIVL-SAGIMTVTRRPRGDDIAAACGQL 334
>gi|257084807|ref|ZP_05579168.1| conserved hypothetical protein [Enterococcus faecalis Fly1]
gi|256992837|gb|EEU80139.1| conserved hypothetical protein [Enterococcus faecalis Fly1]
Length = 357
Score = 208 bits (529), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 121/345 (35%), Positives = 187/345 (54%), Gaps = 30/345 (8%)
Query: 18 FEKAGIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHSVVDSSDD 77
F G K+ +W+++ + E ++P + +LL F L +V + D
Sbjct: 18 FLAHGEKKFRATQVWEWLYTKRVASFSEMSNIPKSLMTLLEENF-SLNPLKQVIVQEAQD 76
Query: 78 VTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATG 137
T K L +L + +E V+MR + L ++C+++QVGC +GC FCA+G
Sbjct: 77 GTVKYLFELPDKNMIETVLMRQEYGL--------------SVCVTTQVGCNIGCTFCASG 122
Query: 138 TMGFKSNLSSGEIVEQLVHASRLSNIR-------NVVFMGMGEPLNNYAALVEAVRIMT- 189
+ + +L++GEIV Q++ + R +VV MG+GEP +NYA ++ +R +
Sbjct: 123 LLKKQRDLTAGEIVAQIMWVQHYFDERGLDERVSHVVVMGIGEPFDNYANVMNFLRTIND 182
Query: 190 --GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPL 247
GL + + ITVST G+V I +F +NLA+SLHAP +VR IM R+FP+
Sbjct: 183 DKGLA--IGARHITVSTSGLVPKIREFADSGLQVNLAISLHAPNNEVRTSIMRINRSFPI 240
Query: 248 EKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVV--VNLIPFNPIG 305
EKLM A+ EY + + +++ EYIML VND +HA QL LL + + VNLIP+NP+
Sbjct: 241 EKLMAAIDEYIEKTNRRVTFEYIMLSQVNDRPEHAQQLADLLRNKKKLSYVNLIPYNPVS 300
Query: 306 SVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 350
Q+ SS + V F +L+ + I +RK+ G DI ACGQL
Sbjct: 301 EHDQYSRSSKEAVLKFYDVLKKN-GINCVIRKEHGTDIDAACGQL 344
>gi|255505596|ref|ZP_05347103.3| radical SAM enzyme, Cfr family [Bryantella formatexigens DSM 14469]
gi|255266841|gb|EET60046.1| 23S rRNA m2A2503 methyltransferase [Marvinbryantia formatexigens
DSM 14469]
Length = 354
Score = 208 bits (529), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 121/352 (34%), Positives = 193/352 (54%), Gaps = 19/352 (5%)
Query: 14 IRAEFEKAGIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHSVVD 73
++ E E G K I++++ E E +LP+ L ++ + + V++
Sbjct: 19 LQRELEALGEKPFRAKQIYQWLHEKLADGVQEMTNLPAKLRETLDVRYLCSSLEMVDVLE 78
Query: 74 SSDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNF 133
S D T K L +LQ+G +E+V+M+Y +++CISSQ GC+MGC F
Sbjct: 79 SKADGTRKYLFRLQDGNVIESVLMKYHHG--------------NSVCISSQAGCRMGCRF 124
Query: 134 CATGTMGFKSNLSSGEIVEQLVHASRLSNIR--NVVFMGMGEPLNNYAALVEAVRIMTGL 191
CA+ G +L GE+++Q+ + S R NVV MG GEPL+NY LV+ + +++
Sbjct: 125 CASTLGGLTRSLLPGEMLDQIYKIQKHSGERVSNVVVMGTGEPLDNYENLVKFIHMLSDE 184
Query: 192 P-FQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKL 250
+S + ITVST GIV I + ++ + LA+SLHAP Q+ R ++MP AR + L ++
Sbjct: 185 HGLNISQRNITVSTCGIVPNIYRLAAEKLQITLALSLHAPTQEKRMELMPIARKYELSEV 244
Query: 251 MNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQF 310
M A + Y + + +++ EY ++ GVND ++ A +L LL+ VNLIP NPI S F
Sbjct: 245 MEACRAYFRETGRRLTFEYSLVGGVNDSQEDARELAVLLDGLNCHVNLIPVNPIKERS-F 303
Query: 311 RTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDKISAKS 362
S ++ F+ L Y I T+R++MG+DI GACGQL + D+ +
Sbjct: 304 VQSERRVIADFKTKLE-KYGINVTIRREMGRDIGGACGQLRKSYLDRTEGEE 354
>gi|27262416|gb|AAN87489.1| florfenicol resistance protein [Heliobacillus mobilis]
Length = 360
Score = 208 bits (529), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 122/330 (36%), Positives = 181/330 (54%), Gaps = 24/330 (7%)
Query: 31 IWKYVIENPNCEWDEFPSLPSAAYSLLRSK--FKPLTSTLHSVVDSSDDVTTKLLVKLQN 88
I+K+V E E LP A S + ++ +PL + V S D T K L +L +
Sbjct: 35 IFKWVQSRAVREAAEMTDLPQALRSKIEAERWLRPLALSCCRV---SKDGTEKYLWQLAD 91
Query: 89 GGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSG 148
G +E V+M Y S + R T+C+S+Q GC +GC FCATG GF+ NL++G
Sbjct: 92 GELIETVLMPYRRSQTR---------DRVTVCLSTQAGCPLGCKFCATGQQGFRRNLTAG 142
Query: 149 EIVEQLV---HASRLSN----IRNVVFMGMGEPLNNYAALVEAVRIMTGLPFQ-VSPKRI 200
EIV Q++ H S+ + N+VFMGMGEP NY + A+ + T Q + +RI
Sbjct: 143 EIVSQVLDITHRKGQSDPDFKVTNLVFMGMGEPFLNYEQVRRAIELFTHPEGQNIGQRRI 202
Query: 201 TVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKN 260
TVST GIV I +F + +NLA+SLHA +R Q MP R +P+EK++NA + Y +
Sbjct: 203 TVSTSGIVPGIERFARENWEINLALSLHAADDQLRSQWMPVNRQYPIEKVLNACRRYWEQ 262
Query: 261 SQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSS 320
++++ +EY +++GVND + A QLGKL + + +N+IP NP+ R V
Sbjct: 263 GRRRLSVEYALIEGVNDRLEDARQLGKLFTRWPIHLNVIPVNPVTESGARRPDKARMVQF 322
Query: 321 FQKILRGSYNIRTTVRKQMGQDISGACGQL 350
++ R I +R++ G DI ACGQL
Sbjct: 323 LDELKR--QGIDAVIREERGVDIEAACGQL 350
>gi|297584286|ref|YP_003700066.1| radical SAM enzyme, Cfr family [Bacillus selenitireducens MLS10]
gi|297142743|gb|ADH99500.1| radical SAM enzyme, Cfr family [Bacillus selenitireducens MLS10]
Length = 358
Score = 207 bits (528), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 114/343 (33%), Positives = 190/343 (55%), Gaps = 26/343 (7%)
Query: 18 FEKAGIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHSVVDSSDD 77
FE G K+ +W ++ ++D+ ++ SL++ F + LHS +S D
Sbjct: 18 FEGKGEKKFRAKQVWDWLYVKRIRDFDDMTNIKKDTISLIKDHFYLESLELHSKQESKDG 77
Query: 78 VTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATG 137
T K L KL +G +E V+M++D +++C+++QVGC +GC+FCA+G
Sbjct: 78 -TKKFLFKLSDGNLIETVLMKFDYG--------------NSVCVTTQVGCNIGCSFCASG 122
Query: 138 TMGFKSNLSSGEIVEQLVHAS-------RLSNIRNVVFMGMGEPLNNYAALVEAVRIM-T 189
+ +L+S EIVEQ++ + ++V MG+GEP +NY L+ +RI+ +
Sbjct: 123 LLKKDRDLTSAEIVEQILKVQFDMDDKQTEERVSHIVVMGIGEPFDNYDNLMSFLRIVNS 182
Query: 190 GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEK 249
+ + ITVST G+V I F + +NLAVSLHAP D+R IM + P+E
Sbjct: 183 DRGLAIGARHITVSTSGLVEKIRAFADENLQVNLAVSLHAPNNDLRSSIMKINKGQPIED 242
Query: 250 LMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQ--VVVNLIPFNPIGSV 307
+M+A+ Y + + ++I +EYI+LDGVND+ +HA +L +L+ + +NLIP+NP+
Sbjct: 243 VMSAIDYYLEKTNRRITLEYILLDGVNDKPEHAKELAELVRDKKKLTYINLIPYNPVDEY 302
Query: 308 SQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 350
Q++ S + +F +L + ++ VR + G DI ACGQL
Sbjct: 303 IQYKQSEKGAILTFYDLLMKN-GVQCGVRHEQGSDIDAACGQL 344
>gi|302392191|ref|YP_003828011.1| 23S rRNA m(2)A-2503 methyltransferase [Acetohalobium arabaticum DSM
5501]
gi|302204268|gb|ADL12946.1| 23S rRNA m(2)A-2503 methyltransferase [Acetohalobium arabaticum DSM
5501]
Length = 350
Score = 207 bits (528), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 121/331 (36%), Positives = 183/331 (55%), Gaps = 29/331 (8%)
Query: 31 IWKYVIENPNCEWDEFPSLPSAAYSLLRSK--FKPLTSTLHSVVDSSDDVTTKLLVKLQN 88
I+ ++ + ++E +L S L+SK + LT + S+D T K L +L++
Sbjct: 33 IFNWIYKQGAVNFEEMTNLSQGLRSRLQSKAYIQQLTEITRA---KSEDGTVKFLFELED 89
Query: 89 GGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSG 148
+E V + Y R+++C+S+QVGC MGCNFCATG G + NL++G
Sbjct: 90 NKEIETVFLPYQDG-------------RNSICVSTQVGCGMGCNFCATGQQGLERNLTTG 136
Query: 149 EIVEQLVHASRL--------SNIRNVVFMGMGEPLNNYAALVEAVRIMTG-LPFQVSPKR 199
EIV Q++ +L S I NVVFMGMGEPL NY + + I+ +S +R
Sbjct: 137 EIVSQILKVQQLMGSNGYDPSLISNVVFMGMGEPLANYDNFLRVIDILNSEKALNISMRR 196
Query: 200 ITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQK 259
ITVST G+V I + L LA+SLHA +R ++MP + +PLE+L+ A + Y +
Sbjct: 197 ITVSTCGLVPQIKRLADKELQLVLAISLHAAEDKLRSEMMPINKRYPLEELIAACEYYLQ 256
Query: 260 NSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVS 319
+ ++I EY ++DGVN+ Q A +L +LL VNLIP NP+ + R + +
Sbjct: 257 KTNRRITFEYALVDGVNNRRQDAEKLAQLLSGLLCHVNLIPVNPVKELGLTRPNR-KAIK 315
Query: 320 SFQKILRGSYNIRTTVRKQMGQDISGACGQL 350
F++IL +NI+ TVR++ G DI ACGQL
Sbjct: 316 EFKEIL-DRHNIQATVRQERGNDIEAACGQL 345
>gi|251799946|ref|YP_003014677.1| radical SAM enzyme, Cfr family [Paenibacillus sp. JDR-2]
gi|247547572|gb|ACT04591.1| radical SAM enzyme, Cfr family [Paenibacillus sp. JDR-2]
Length = 356
Score = 207 bits (528), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 119/342 (34%), Positives = 190/342 (55%), Gaps = 31/342 (9%)
Query: 22 GIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHSVVDSSDDVTTK 81
G K+ +W+Y+ + + + LL + T H+ S D T K
Sbjct: 22 GHKKFRATQVWEYLYRKRVTSFADMTDVHPDCVKLLEENYAIQTLVEHTK-QVSKDGTVK 80
Query: 82 LLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGF 141
LL+KL +G +E V+MR+ L ++C+++QVGC +GC+FCA+G +
Sbjct: 81 LLLKLDDGNLIETVMMRHKFGL--------------SVCVTTQVGCNIGCSFCASGLLKK 126
Query: 142 KSNLSSGEIVEQLV-------HASRLSNIRNVVFMGMGEPLNNYAAL---VEAVRIMTGL 191
+L+SGEIVEQ++ + + + ++V MG+GEP +N+ L + V+ GL
Sbjct: 127 SRDLTSGEIVEQIMKIQLHLDESGQGEKVSHIVVMGIGEPFDNFIHLNDFLTTVKDHKGL 186
Query: 192 PFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLM 251
+ P+ ITVST G+ I +F G+NLAVSLHAP ++R +IM RA P+EKLM
Sbjct: 187 A--IGPRHITVSTSGLADKIREFADKDQGVNLAVSLHAPNNELRTRIMKINRAIPIEKLM 244
Query: 252 NALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQ---VVVNLIPFNPIGSVS 308
+A+ Y + + ++I +EYI+L VND+ +HA +L +L+ + V VNLIP+NP+ S
Sbjct: 245 DAIDYYLERTNRRITLEYILLKDVNDQPEHALELAELVGDRRRSLVNVNLIPYNPVDEHS 304
Query: 309 QFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 350
Q++ S +D + F L+ ++ +VR + G DI ACGQL
Sbjct: 305 QYQRSENDSIKGFYDTLKKQ-DVSVSVRLEHGADIDAACGQL 345
>gi|345858751|ref|ZP_08811131.1| radical SAM superfamily protein [Desulfosporosinus sp. OT]
gi|344328167|gb|EGW39565.1| radical SAM superfamily protein [Desulfosporosinus sp. OT]
Length = 357
Score = 207 bits (528), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 119/339 (35%), Positives = 188/339 (55%), Gaps = 26/339 (7%)
Query: 22 GIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHSVVDSSDDVTTK 81
G K+ +W ++ + E + LL F + + HS +S+D TTK
Sbjct: 25 GHKKSRASQVWDWLYRKRVRHFSEIIDVNKECLYLLADHFVIQSLSEHSKQESADG-TTK 83
Query: 82 LLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGF 141
L +L++ +E V+MR+ L ++C+++QVGC MGC+FCA+G +
Sbjct: 84 FLFRLKDDNLIETVLMRHKFGL--------------SVCVTTQVGCNMGCSFCASGLLTK 129
Query: 142 KSNLSSGEIVEQLV-------HASRLSNIRNVVFMGMGEPLNNYAALVEAVRIMTGLP-F 193
+LSSGEIVEQ++ A + +VV MG+GEP +N+ + +A+RI+
Sbjct: 130 IRDLSSGEIVEQIMKVQHHLDEAKLEERVSHVVVMGIGEPFDNFKNVADALRIIKDHKGL 189
Query: 194 QVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNA 253
++ KRITVST G+ I +F + +NLA+SLHAP ++R QIM RAFP+E+LM A
Sbjct: 190 AIAGKRITVSTSGLADGIYEFTDNSLQVNLAISLHAPTNELRTQIMKINRAFPIEELMQA 249
Query: 254 LKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLL--ETFQVVVNLIPFNPIGSVSQFR 311
+ Y K + ++I +EYI+L +ND +HA QL L+ + VNLIP+NP+ +Q++
Sbjct: 250 VDYYLKKTNRRITLEYILLKNLNDRREHALQLAALIGDKHHLTNVNLIPYNPVDEHNQYQ 309
Query: 312 TSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 350
S + + +F L+ I ++R + G DI ACGQL
Sbjct: 310 RSEHESMLAFYDTLKKQ-GINCSIRLEHGTDIDAACGQL 347
>gi|379722974|ref|YP_005315105.1| protein RlmN [Paenibacillus mucilaginosus 3016]
gi|386725759|ref|YP_006192085.1| ribosomal RNA large subunit methyltransferase N [Paenibacillus
mucilaginosus K02]
gi|378571646|gb|AFC31956.1| RlmN [Paenibacillus mucilaginosus 3016]
gi|384092884|gb|AFH64320.1| ribosomal RNA large subunit methyltransferase N [Paenibacillus
mucilaginosus K02]
Length = 358
Score = 207 bits (528), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 122/329 (37%), Positives = 188/329 (57%), Gaps = 32/329 (9%)
Query: 32 WKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHSVVD-SSDDVTTKLLVKLQNGG 90
W YV N +DE +LP LR +F +T LH V S D T K L +L +
Sbjct: 42 WLYVKRISN--FDEMTNLPKTLRDKLREQFDFVT--LHEVAHYRSKDGTVKFLFELADKN 97
Query: 91 FVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEI 150
+E V+M+++ +++C+++QVGC++GC FCA+ G K NL+ GEI
Sbjct: 98 AIETVVMKHNYG--------------NSICVTTQVGCRIGCTFCASTLGGLKRNLTPGEI 143
Query: 151 VEQLVHASRL-----SNIRNVVFMGMGEPLNNYAALVEAVRIM---TGLPFQVSPKRITV 202
+ Q+V A +L + ++V MG+GEP NY A++ +R+M GL + + ITV
Sbjct: 144 IAQVVKAQQLLDETGERVSSIVIMGIGEPFENYDAVMTFLRVMIHPKGL--NIGQRHITV 201
Query: 203 STVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQ 262
ST GIV I KF + +NLA+S+HAP +R ++MP R FP L+ A K Y +
Sbjct: 202 STSGIVPNIYKFAEEETQINLAISIHAPNDALRSKLMPVNRRFPFADLIEACKFYVGKTG 261
Query: 263 QKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVV-VNLIPFNPIGSVSQFRTSSDDKVSSF 321
++I EY ++ GVND+ +HA +L ++L++F + VNLIP N + + RT +D + +F
Sbjct: 262 RRITFEYALMGGVNDQPEHAEELAQVLQSFPMAHVNLIPVNFVSERNFVRTPRND-IFTF 320
Query: 322 QKILRGSYNIRTTVRKQMGQDISGACGQL 350
Q+IL + I T+R++ G DI+ ACGQL
Sbjct: 321 QRILEKN-KINATIRREQGSDIAAACGQL 348
>gi|391228628|ref|ZP_10264834.1| 23S rRNA m2A2503 methyltransferase [Opitutaceae bacterium TAV1]
gi|391218289|gb|EIP96709.1| 23S rRNA m2A2503 methyltransferase [Opitutaceae bacterium TAV1]
Length = 371
Score = 207 bits (528), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 125/339 (36%), Positives = 184/339 (54%), Gaps = 34/339 (10%)
Query: 31 IWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHSVVDSSDDVTTKLLVKLQNGG 90
I +V + WDE +LP + L F+ + ++L S DVT KLL++L +
Sbjct: 35 ILDWVYKKRARSWDEMTNLPKPLRAWLAGTFELMPASL-VFGKQSHDVTDKLLLELGDRS 93
Query: 91 FVEAVIMRYDSSLGKYNGKPRPG----GPRSTLCISSQVGCKMGCNFCATGTMGFKSNLS 146
+E VI+R P+ G R T+CIS+QVGC M C FCA+G G K +L
Sbjct: 94 LIETVIIR----------APQEGVGLDHSRKTICISTQVGCAMACAFCASGLAGLKRDLH 143
Query: 147 SGEIVEQLVHA------------SRLSNIRNVVFMGMGEPLNNYAALVEAVRIMT---GL 191
+GEIV QL+H S L++ N+V MGMGEPL NY A++ A+ I+ GL
Sbjct: 144 AGEIVAQLLHVCYREDALTPRARSELASFDNIVVMGMGEPLANYDAIIRALTIVNADWGL 203
Query: 192 PFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLM 251
F +RIT+ST G+V I K + G+ LA+SLH +VR +IMP +AFPL KL+
Sbjct: 204 GF--GARRITLSTSGLVPKIYKLAEEPLGIRLAISLHGATDEVREKIMPVNKAFPLAKLI 261
Query: 252 NALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFR 311
A++ + + + I +E+I+++ VND A +L + VNLIP+N + + ++
Sbjct: 262 PAIRAFSEKHGRMITLEFILIEEVNDSLDQAEKLRDIARDLHAHVNLIPYNTVEGLP-WK 320
Query: 312 TSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 350
S + F ILR + I T+R++ G DI ACGQL
Sbjct: 321 RPSVTRQERFANILRAA-RISVTLRREKGHDIDAACGQL 358
>gi|351731457|ref|ZP_08949148.1| radical SAM protein [Acidovorax radicis N35]
Length = 374
Score = 207 bits (528), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 142/371 (38%), Positives = 197/371 (53%), Gaps = 40/371 (10%)
Query: 9 FDGGIIRAEFEKAGIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTL 68
FD + A ++ G K+ +++++ + ++D L A LR K K
Sbjct: 9 FDLDGLAAFCQQLGEKRFRATQLFRWIHQRGASDFDAMSDLAKA----LRDKLKGCARVE 64
Query: 69 HSVVDS---SDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQV 125
V S S D T K L + +G VEAV + P R TLCISSQ
Sbjct: 65 ALPVVSEHVSSDGTVKWLFDVGDGNAVEAVFI--------------PEDDRGTLCISSQA 110
Query: 126 GCKMGCNFCATGTMGFKSNLSSGEIVEQLVHAS-----RLSN----IRNVVFMGMGEPLN 176
GC +GC FC+TG GF NL++GEI+ QL A RL + I NVV MGMGEPL
Sbjct: 111 GCAVGCRFCSTGHQGFSRNLTTGEIIAQLWFAEHSLRQRLKSEDRVISNVVMMGMGEPLQ 170
Query: 177 NYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVR 235
NY+ALV A+R M + +S +R+TVST G+V +++ D P + LAVSLHAP +R
Sbjct: 171 NYSALVPALRTMLDDHGYGLSRRRVTVSTSGVVPMMDRLSQDCP-VALAVSLHAPNDPLR 229
Query: 236 CQIMPAARAFPLEKLMNALKEYQKNSQQK-IFIEYIMLDGVNDEEQHAHQLGKLL----- 289
++P R +P+++L+ A Y ++ + I EY MLDGVND+ +HA QL +L+
Sbjct: 230 DNLVPLNRKYPIDELLAACNRYLAHAPRDFITFEYCMLDGVNDQVEHARQLIELVKPARG 289
Query: 290 ETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQ 349
E + NLIPFNP + R S +V +F K+L I TTVRK G DI ACGQ
Sbjct: 290 EGVRCKFNLIPFNPFPASGLLR-SPQSQVLAFAKVL-SEAGIVTTVRKTRGDDIDAACGQ 347
Query: 350 LVVNLPDKISA 360
L ++ D+ A
Sbjct: 348 LAGDVKDRTRA 358
>gi|285808444|gb|ADC35970.1| conserved hypothetical protein [uncultured bacterium 98]
Length = 358
Score = 207 bits (527), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 126/351 (35%), Positives = 188/351 (53%), Gaps = 24/351 (6%)
Query: 9 FDGGIIRAEFEKAGIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTL 68
+ G + A + G ++ I+++V + + L A +L + F S+
Sbjct: 10 LEPGELEAALDARGFERFHARQIYRWVYKRGVTDLQRMTDLSRALRGVLDTDFT--ASSP 67
Query: 69 HSVVDS-SDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGC 127
V D S D T K L+ L +G +EAV + P P T CIS+QVGC
Sbjct: 68 RVVTDELSVDGTRKFLLALADGKRIEAVFI--------------PDTPAMTFCISTQVGC 113
Query: 128 KMGCNFCATGTMGFKSNLSSGEIVEQ---LVHASRLSN-IRNVVFMGMGEPLNNYAALVE 183
M C FC TG MG NL++GEI Q L A+ L++ N+V MGMGEPL+NY ++
Sbjct: 114 AMACGFCLTGKMGLVRNLTAGEIAGQVRVLAAATGLADQAFNIVLMGMGEPLHNYDNTMK 173
Query: 184 AVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAA 242
A+R++ + +SP+R+T+STVGIV + + + NLAVSLHA + R ++P
Sbjct: 174 ALRMLHSEHGLSISPRRVTLSTVGIVPGLERLAREPLMPNLAVSLHATTDEQRSALVPPN 233
Query: 243 RAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFN 302
R +PL ++ A + + + +I EY++LDGVND + A +L +LL + VNLIP N
Sbjct: 234 RKYPLADIIAACQRFPLKQRSRITFEYVLLDGVNDSPEDARRLVRLLAGIRAKVNLIPLN 293
Query: 303 PIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVN 353
P + F SD +V F +IL ++ +VRK GQDI ACGQL+V+
Sbjct: 294 PAPGIP-FERPSDARVDRFAQIL-ADRHLTVSVRKSRGQDIRAACGQLIVD 342
>gi|333371224|ref|ZP_08463184.1| cfr family radical SAM enzyme [Desmospora sp. 8437]
gi|332976466|gb|EGK13312.1| cfr family radical SAM enzyme [Desmospora sp. 8437]
Length = 350
Score = 207 bits (527), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 120/327 (36%), Positives = 189/327 (57%), Gaps = 29/327 (8%)
Query: 32 WKYVIENPNCEWDEFPSLPSAAYSLLRSKF--KPLTSTLHSVVDSSDDVTTKLLVKLQNG 89
W YV P+ + + +L L F KPL + V S D T K L +L +G
Sbjct: 33 WLYVKRVPS--FADMTNLSRGLRERLERDFQLKPLETI---TVRQSADGTIKFLFQLFDG 87
Query: 90 GFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGE 149
+E VIMR++ +++C+++QVGC++GC FCA+ G K +L +GE
Sbjct: 88 HAIETVIMRHNYG--------------NSVCVTTQVGCRVGCTFCASTLGGLKRDLKAGE 133
Query: 150 IVEQLVHASRL-----SNIRNVVFMGMGEPLNNYAALVEAVRIMTGLP-FQVSPKRITVS 203
+V Q++ A R + +VV MG+GEP NY A V+ +R++ ++ +RITVS
Sbjct: 134 VVAQVLEAQRYLDRWGERVHSVVIMGIGEPFENYDASVQFMRVIQDEKGLNLAQRRITVS 193
Query: 204 TVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQ 263
T GIV +I +F + + LA+SLHAP Q +R ++MP + +PLE+L+ A + Y + + +
Sbjct: 194 TSGIVPSIYRFAEEGLQVGLAISLHAPNQALRKRLMPVSYRYPLEELLAACRYYVQKTGR 253
Query: 264 KIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQK 323
+I EY ++ G ND +HAH+LG+LLE ++NLIP N + + RT +++ F+
Sbjct: 254 RITYEYALIGGKNDAPEHAHELGRLLEGSGSLINLIPVNHVPERNYTRTPR-NRIFKFRD 312
Query: 324 ILRGSYNIRTTVRKQMGQDISGACGQL 350
IL+ SYN+ TT+R++ G DI ACGQL
Sbjct: 313 ILQ-SYNLNTTIRREHGSDIEAACGQL 338
>gi|357051317|ref|ZP_09112511.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
saccharolyticus 30_1]
gi|355380139|gb|EHG27284.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
saccharolyticus 30_1]
Length = 354
Score = 207 bits (527), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 117/334 (35%), Positives = 188/334 (56%), Gaps = 34/334 (10%)
Query: 31 IWKYVIENPNCEWDEFPSLPSAAYSLLRSKF--KPLTSTLHSVVDSSDDVTTKLLVKLQN 88
+W+++ E ++E +LP + + L F PL V+ + D T K L +L +
Sbjct: 30 VWEWLYEKRVATFEEMTNLPKSLVTKLNESFVINPLKQI---VLQEASDGTVKYLFQLPD 86
Query: 89 GGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSG 148
+E V+MR + + ++C+++QVGC +GC FCA+G + + +L++G
Sbjct: 87 NHMIETVLMRQEYGM--------------SVCVTTQVGCNIGCTFCASGLLKKQRDLTAG 132
Query: 149 EIVEQLVHASRL-------SNIRNVVFMGMGEPLNNYAALVEAVRIMT---GLPFQVSPK 198
EIV Q++ + +VV MG+GEP +NY +++ ++I+ GL + +
Sbjct: 133 EIVAQIMLVQHYFDELNAGERVSHVVVMGIGEPFDNYENVMQFLQIINDPKGLA--IGAR 190
Query: 199 RITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQ 258
ITVST G+ H I +F + +NLA+SLHAP +VR +M R+FP+EKLM A+ Y
Sbjct: 191 HITVSTSGLAHKIKEFAENGLQVNLAISLHAPNNEVRTSMMRINRSFPIEKLMEAIDYYL 250
Query: 259 KNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVV--VNLIPFNPIGSVSQFRTSSDD 316
+ + ++I EYIMLD VND +HA QL +LL+ + + VNLIP+NP+ Q+ S +
Sbjct: 251 EKTNRRITFEYIMLDHVNDRPEHARQLVELLKNKRKLSYVNLIPYNPVSEHDQYARSKKE 310
Query: 317 KVSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 350
V +F IL+ + I +RK+ G DI ACGQL
Sbjct: 311 DVLAFYDILKKN-GINCVIRKEHGTDIDAACGQL 343
>gi|46581308|ref|YP_012116.1| ribosomal RNA large subunit methyltransferase N [Desulfovibrio
vulgaris str. Hildenborough]
gi|387154527|ref|YP_005703463.1| radical SAM enzyme, Cfr family [Desulfovibrio vulgaris RCH1]
gi|81404173|sp|Q727F1.1|RLMN_DESVH RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|46450729|gb|AAS97376.1| radical SAM enzyme, Cfr family [Desulfovibrio vulgaris str.
Hildenborough]
gi|311234971|gb|ADP87825.1| radical SAM enzyme, Cfr family [Desulfovibrio vulgaris RCH1]
Length = 364
Score = 207 bits (527), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 128/332 (38%), Positives = 191/332 (57%), Gaps = 28/332 (8%)
Query: 31 IWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHSVVDSSDDVTTKLLVKLQNGG 90
+W+++ + +DE ++ A + L K +T V S D TTK L++L +G
Sbjct: 30 VWQWLWQKCARSFDEMTNVSKATRARLAEK-AVITWPEVETVQKSADGTTKFLLRLADGA 88
Query: 91 FVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEI 150
VE V++ S R G R T C+S QVGC MGC FC+TGTMGF+ N++ GEI
Sbjct: 89 LVETVLIPSAS---------REGTLRITQCLSCQVGCAMGCTFCSTGTMGFERNMTMGEI 139
Query: 151 VEQ-LVHASRLSN-------IRNVVFMGMGEPLNNYAALVEAVRIMT---GLPFQVSPKR 199
+ Q LV + L + +RN+VFMGMGEPL N ++ ++R + GL F SP+R
Sbjct: 140 LGQVLVARAHLGDSRPDHPILRNLVFMGMGEPLLNLNEVMRSLRTLNDEFGLSF--SPRR 197
Query: 200 ITVSTVGIVHAINKFHSDLPGLN-LAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQ 258
ITVST GI + + GL LAVSLHAP Q++R +IMP A + L+ L+ AL+ Y
Sbjct: 198 ITVSTCGIEKGLRELGES--GLAFLAVSLHAPNQEIRKRIMPKAAHWHLDDLITALESYP 255
Query: 259 KNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKV 318
+++++ EY++L GVND +HA +L +L+ + +NLI +NP + + +++
Sbjct: 256 LKTRERVTFEYLLLGGVNDGIEHARELVRLVSRTKGKLNLIVYNP-AEGDPYDAPTPERI 314
Query: 319 SSFQKILRGSYNIRTTVRKQMGQDISGACGQL 350
+F++ L S NI +RK GQDI ACGQL
Sbjct: 315 LAFEQYL-WSKNITAIIRKSKGQDIKAACGQL 345
>gi|340782108|ref|YP_004748715.1| ribosomal RNA large subunit methyltransferase N [Acidithiobacillus
caldus SM-1]
gi|340556261|gb|AEK58015.1| Ribosomal RNA large subunit methyltransferase N [Acidithiobacillus
caldus SM-1]
Length = 370
Score = 207 bits (527), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 117/278 (42%), Positives = 164/278 (58%), Gaps = 21/278 (7%)
Query: 77 DVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCAT 136
D T K L++L +G +E V + P R TLCISSQVGC + C+FCAT
Sbjct: 87 DGTRKWLLRLPDGNAIETVFI--------------PEEDRGTLCISSQVGCSLACSFCAT 132
Query: 137 GTMGFKSNLSSGEIVEQLVHASR---LSNIRNVVFMGMGEPLNNYAALVEAVRIM-TGLP 192
G G NLSS EIV Q+ A R L I NVVFMGMGEPL N ++ +R++
Sbjct: 133 GAQGLNRNLSSHEIVAQVRVARRHLGLDAITNVVFMGMGEPLLNLKQVIPVIRLLLDDFA 192
Query: 193 FQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMN 252
+ +S +R+TVST G++ + + + P +NLA+SLHA D+R +++P R +PL +LM
Sbjct: 193 YGLSSRRVTVSTAGVLPGLEQLGRETP-VNLAISLHASRNDLRDELVPINRHYPLAQLMA 251
Query: 253 ALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRT 312
A + Y +++I EY+MLDGVND + A L +LL +VNLIPFNP S +R
Sbjct: 252 ACRSYPLPPRRRITFEYVMLDGVNDSDADARALVRLLRGLPALVNLIPFNPFPG-SPYRR 310
Query: 313 SSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 350
SS ++ +F++I+ S I T R+ G DI+ ACGQL
Sbjct: 311 SSLARIDAFREIVL-SAGIMTVTRRPRGDDIAAACGQL 347
>gi|402836995|ref|ZP_10885526.1| 23S rRNA m2A2503 methyltransferase [Mogibacterium sp. CM50]
gi|402270011|gb|EJU19280.1| 23S rRNA m2A2503 methyltransferase [Mogibacterium sp. CM50]
Length = 346
Score = 207 bits (526), Expect = 8e-51, Method: Compositional matrix adjust.
Identities = 115/311 (36%), Positives = 177/311 (56%), Gaps = 19/311 (6%)
Query: 43 WDEFPSLPSAAYSLLRSKFKPLTSTLHSVVDSSDDVTTKLLVKLQNGGFVEAVIMRYDSS 102
+DE +LP L + +V +S D T K L + +G VEAV M+Y+
Sbjct: 49 FDEMSNLPVRLRGALAQDYYIDMPGAVTVQESKQDGTCKCLFEFSDGARVEAVYMKYNYG 108
Query: 103 LGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRL-- 160
+++CISSQVGC+MGC+FCA+ G +L+ GE++ Q++ RL
Sbjct: 109 --------------NSICISSQVGCRMGCSFCASTRKGLDRSLTGGEMLAQVLKMRRLIG 154
Query: 161 SNIRNVVFMGMGEPLNNYAALVEAVRIMTGLP-FQVSPKRITVSTVGIVHAINKFHSDLP 219
+I +VV MG+GEP +NY L + + ++ + + + ITVST G+V I +F D P
Sbjct: 155 EDIGHVVIMGIGEPFDNYEGLSKFISLINSKQGYNLGMRNITVSTCGLVPMIEQFGKDFP 214
Query: 220 GLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEE 279
+NLAVSLHAP D+R + MP AR + E L+ A + Y ++++++I EY ++DGVND+
Sbjct: 215 QVNLAVSLHAPNDDIRRRTMPIARRYAYEDLITACRTYTESTKRRITFEYALIDGVNDQR 274
Query: 280 QHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQM 339
+HA +L L+ + VNLIP N + + TS+ + V SF L ++I +VR+ +
Sbjct: 275 EHALELAGHLKGWLTHVNLIPLNEVDGTG-YLTSNRETVRSFAWTLE-EHSIAVSVRRTL 332
Query: 340 GQDISGACGQL 350
G DI ACGQL
Sbjct: 333 GTDIDAACGQL 343
>gi|407478596|ref|YP_006792473.1| ribosomal RNA large subunit methyltransferase N [Exiguobacterium
antarcticum B7]
gi|407062675|gb|AFS71865.1| Ribosomal RNA large subunit methyltransferase N [Exiguobacterium
antarcticum B7]
Length = 357
Score = 207 bits (526), Expect = 8e-51, Method: Compositional matrix adjust.
Identities = 121/332 (36%), Positives = 184/332 (55%), Gaps = 30/332 (9%)
Query: 31 IWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHSVVDSSDDVTTKLLVKLQNGG 90
+W ++ + E ++ LL F + S SV S D T K L KL +G
Sbjct: 31 VWDWLYRKRVTTFAEMTNVNKDCLELLDQSF-AINSMTESVKQESADGTIKFLFKLYDGS 89
Query: 91 FVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEI 150
+E V+MR+ L ++C+++QVGC +GC+FCA+G + +LS+GEI
Sbjct: 90 LIETVLMRHKYGL--------------SVCVTTQVGCNIGCSFCASGLIKKSRDLSAGEI 135
Query: 151 VEQLVHAS-------RLSNIRNVVFMGMGEPLNNYAALVEAVRIM---TGLPFQVSPKRI 200
VEQ+++ + + +VV MG+GEP +N+ +V+ + ++ GL + + I
Sbjct: 136 VEQIMNVQHHLDAVGKEERVSHVVVMGIGEPFDNFDNMVDFLNVIKDHNGLA--IGARHI 193
Query: 201 TVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKN 260
TVST G+ I KF +NLA+SLHAP ++R QIM RA PLEKLM A+ Y K
Sbjct: 194 TVSTSGLADKIYKFADLKLQVNLAISLHAPNNELRTQIMKINRAIPLEKLMPAIDYYVKT 253
Query: 261 SQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQ--VVVNLIPFNPIGSVSQFRTSSDDKV 318
+ +KI IEYI+L GVND++ A +L KL E + VNLIP+NP+ Q++ S+ + +
Sbjct: 254 TNRKITIEYILLRGVNDQKAQAIELAKLFEDKRHLTYVNLIPYNPVDEHGQYQRSTSEDI 313
Query: 319 SSFQKILRGSYNIRTTVRKQMGQDISGACGQL 350
S+F L+ + + VR + G DI ACGQL
Sbjct: 314 SAFYDTLKKN-GLNCGVRLEHGTDIDAACGQL 344
>gi|335038848|ref|ZP_08532050.1| Ribosomal RNA large subunit methyltransferase N [Caldalkalibacillus
thermarum TA2.A1]
gi|334181264|gb|EGL83827.1| Ribosomal RNA large subunit methyltransferase N [Caldalkalibacillus
thermarum TA2.A1]
Length = 355
Score = 207 bits (526), Expect = 8e-51, Method: Compositional matrix adjust.
Identities = 120/332 (36%), Positives = 185/332 (55%), Gaps = 30/332 (9%)
Query: 31 IWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHSVVDSSDDVTTKLLVKLQNGG 90
+W ++ + ++ E ++ LL+ F + S + S D T K L KL +G
Sbjct: 30 VWDWLYKKRVKDFSEMRNVNKDCLQLLQEHF-VIQSLSEQIKQQSADGTIKFLFKLPDGH 88
Query: 91 FVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEI 150
+E V+MR+ L ++C+++QVGC +GC FCA+G + +LSSGEI
Sbjct: 89 MIETVLMRHHYGL--------------SVCVTTQVGCNIGCTFCASGLLKKSRDLSSGEI 134
Query: 151 VEQLVHASRL-------SNIRNVVFMGMGEPLNNYAALVEAVRIMT---GLPFQVSPKRI 200
VEQ++ + + + +VV MG+GEP +NY L++ +RI+ GL + +RI
Sbjct: 135 VEQIIKVQQYLDEYEQGNRVSHVVVMGIGEPFDNYDHLMDFLRIINDQDGLA--IGARRI 192
Query: 201 TVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKN 260
TVST GIV I +F +NLA+SLHAP ++R QIM RA+PL++LM A + Y
Sbjct: 193 TVSTSGIVPKIYQFADANLQVNLAISLHAPNDELRTQIMKINRAYPLKELMRACQYYVAK 252
Query: 261 SQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQ--VVVNLIPFNPIGSVSQFRTSSDDKV 318
+ ++I EYI+L VND +Q A QL L+ + V VNLIP+NP+ Q++ S+ V
Sbjct: 253 TNRRITFEYILLKDVNDHKQEALQLADLIGDMRHLVYVNLIPYNPVAEHQQYQRSTPQAV 312
Query: 319 SSFQKILRGSYNIRTTVRKQMGQDISGACGQL 350
+F + L+ I +R++ G DI ACGQL
Sbjct: 313 QAFYETLKAK-GINCGIRREHGTDIDAACGQL 343
>gi|254304122|ref|ZP_04971480.1| hypothetical protein FNP_1792 [Fusobacterium nucleatum subsp.
polymorphum ATCC 10953]
gi|148324314|gb|EDK89564.1| hypothetical protein FNP_1792 [Fusobacterium nucleatum subsp.
polymorphum ATCC 10953]
Length = 358
Score = 207 bits (526), Expect = 8e-51, Method: Compositional matrix adjust.
Identities = 122/336 (36%), Positives = 186/336 (55%), Gaps = 17/336 (5%)
Query: 22 GIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSK-FKPLTSTLHSVVDSSDDVTT 80
G+K+ + ++ ++ + +DE +L +L+ K + P + L V S D T
Sbjct: 24 GLKKFYGKEVFIWLHKKIARSFDEMTNLSLKDREILKEKTYIPFFNLLKYQV-SKIDKTE 82
Query: 81 KLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMG 140
K L +L++GG +E V++R+ S K R+TLC+SSQVGC + C+FCATG G
Sbjct: 83 KFLFELEDGGTIETVLLRHKDSKNK--------EIRNTLCVSSQVGCPVKCSFCATGQSG 134
Query: 141 FKSNLSSGEIVEQLVHASRL-----SNIRNVVFMGMGEPLNNYAALVEAVRIMTGLP-FQ 194
+ NLS EI+ Q+ R + N+VFMGMGEPL N L +++ I++
Sbjct: 135 YMRNLSVSEILNQVYTVERRLRKKGETLNNLVFMGMGEPLLNIDNLAKSLSIISNENGVN 194
Query: 195 VSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNAL 254
+S ++IT+ST G+V I K D + LAVSLH+ + + R +I+P + FPLE L L
Sbjct: 195 ISKRKITISTSGVVSGIEKILLDKIPIELAVSLHSAINEKRDKIIPINKNFPLEDLSAVL 254
Query: 255 KEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSS 314
EYQK +++++ EYI++D N E A+ L + F VVNLIP+N + V R S
Sbjct: 255 VEYQKQTKRRVTFEYILIDNFNISETDANALADFIHQFDHVVNLIPYNEVEGVEHTRPSV 314
Query: 315 DDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 350
K+ F L+ + T+R++ G DI GACGQL
Sbjct: 315 -KKIDKFYNYLKNVRKVNVTLRQEKGSDIDGACGQL 349
>gi|373850608|ref|ZP_09593409.1| Ribosomal RNA large subunit methyltransferase N [Opitutaceae
bacterium TAV5]
gi|372476773|gb|EHP36782.1| Ribosomal RNA large subunit methyltransferase N [Opitutaceae
bacterium TAV5]
Length = 371
Score = 207 bits (526), Expect = 8e-51, Method: Compositional matrix adjust.
Identities = 125/339 (36%), Positives = 184/339 (54%), Gaps = 34/339 (10%)
Query: 31 IWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHSVVDSSDDVTTKLLVKLQNGG 90
I +V + WDE +LP + L F+ + ++L S DVT KLL++L +
Sbjct: 35 ILDWVYKKRARSWDEMTNLPKPLRAWLAGTFELMPASL-VFGKQSHDVTDKLLLELGDRS 93
Query: 91 FVEAVIMRYDSSLGKYNGKPRPG----GPRSTLCISSQVGCKMGCNFCATGTMGFKSNLS 146
+E VI+R P+ G R T+CIS+QVGC M C FCA+G G K +L
Sbjct: 94 LIETVIIR----------APQEGVGLDHSRKTICISTQVGCAMACAFCASGLAGLKRDLH 143
Query: 147 SGEIVEQLVHA------------SRLSNIRNVVFMGMGEPLNNYAALVEAVRIMT---GL 191
+GEIV QL+H S L++ N+V MGMGEPL NY A++ A+ I+ GL
Sbjct: 144 AGEIVAQLLHVCYREDALTPRARSELASFDNIVVMGMGEPLANYDAIIRALTIVNADWGL 203
Query: 192 PFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLM 251
F +RIT+ST G+V I K + G+ LA+SLH +VR +IMP +AFPL KL+
Sbjct: 204 GF--GARRITLSTSGLVPKIYKLAEEPLGIRLAISLHGATDEVREKIMPVNKAFPLAKLI 261
Query: 252 NALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFR 311
A++ + + + I +E+I+++ VND A +L + VNLIP+N + + ++
Sbjct: 262 PAIQAFSEKHGRMITLEFILIEEVNDSLDQAEKLRDIARDLHAHVNLIPYNTVEGLP-WK 320
Query: 312 TSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 350
S + F ILR + I T+R++ G DI ACGQL
Sbjct: 321 RPSVTRQERFANILRAA-RISVTLRREKGHDIDAACGQL 358
>gi|257870949|ref|ZP_05650602.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
gallinarum EG2]
gi|257805113|gb|EEV33935.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
gallinarum EG2]
Length = 360
Score = 207 bits (526), Expect = 8e-51, Method: Compositional matrix adjust.
Identities = 117/334 (35%), Positives = 188/334 (56%), Gaps = 34/334 (10%)
Query: 31 IWKYVIENPNCEWDEFPSLPSAAYSLLRSKF--KPLTSTLHSVVDSSDDVTTKLLVKLQN 88
+W+++ E ++E +LP + + L F PL V+ + D T K L +L +
Sbjct: 36 VWEWLYEKRVATFEEMTNLPKSLVTKLNESFVINPLKQI---VLQEASDGTVKYLFQLPD 92
Query: 89 GGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSG 148
+E V+MR + + ++C+++QVGC +GC FCA+G + + +L++G
Sbjct: 93 NHMIETVLMRQEYGM--------------SVCVTTQVGCNIGCTFCASGLLKKQRDLTAG 138
Query: 149 EIVEQLVHASRL-------SNIRNVVFMGMGEPLNNYAALVEAVRIMT---GLPFQVSPK 198
EIV Q++ + +VV MG+GEP +NY +++ ++I+ GL + +
Sbjct: 139 EIVAQIMLVQHYFDELNAGERVSHVVVMGIGEPFDNYENVMQFLQIINDPKGLA--IGAR 196
Query: 199 RITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQ 258
ITVST G+ H I +F + +NLA+SLHAP +VR +M R+FP+EKLM A+ Y
Sbjct: 197 HITVSTSGLAHKIKEFAENGLQVNLAISLHAPNNEVRTSMMRINRSFPIEKLMEAIDYYL 256
Query: 259 KNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVV--VNLIPFNPIGSVSQFRTSSDD 316
+ + ++I EYIMLD VND +HA QL +LL+ + + VNLIP+NP+ Q+ S +
Sbjct: 257 EKTNRRITFEYIMLDHVNDRPEHARQLVELLKNKRKLSYVNLIPYNPVSEHDQYARSKKE 316
Query: 317 KVSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 350
V +F IL+ + I +RK+ G DI ACGQL
Sbjct: 317 DVLAFYDILKKN-GINCVIRKEHGTDIDAACGQL 349
>gi|422339618|ref|ZP_16420576.1| radical SAM enzyme, Cfr family [Fusobacterium nucleatum subsp.
polymorphum F0401]
gi|355370761|gb|EHG18140.1| radical SAM enzyme, Cfr family [Fusobacterium nucleatum subsp.
polymorphum F0401]
Length = 358
Score = 207 bits (526), Expect = 8e-51, Method: Compositional matrix adjust.
Identities = 122/336 (36%), Positives = 186/336 (55%), Gaps = 17/336 (5%)
Query: 22 GIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSK-FKPLTSTLHSVVDSSDDVTT 80
G+K+ + ++ ++ + +DE +L +L+ K + P + L V S D T
Sbjct: 24 GLKKFYGKEVFIWLHKKIARSFDEMTNLSLKDREILKEKTYIPFFNLLKYQV-SKIDKTE 82
Query: 81 KLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMG 140
K L +L++GG +E V++R+ S K R+TLC+SSQVGC + C+FCATG G
Sbjct: 83 KFLFELEDGGTIETVLLRHKDSKNK--------EIRNTLCVSSQVGCPVKCSFCATGQSG 134
Query: 141 FKSNLSSGEIVEQLVHASRL-----SNIRNVVFMGMGEPLNNYAALVEAVRIMTGLP-FQ 194
+ NLS EI+ Q+ R + N+VFMGMGEPL N L +++ I++
Sbjct: 135 YMRNLSVSEILNQVYTVERRLRKKGETLNNLVFMGMGEPLLNIDNLAKSLSIISNENGVN 194
Query: 195 VSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNAL 254
+S ++IT+ST G+V I K D + LAVSLH+ + + R +I+P + FPLE L L
Sbjct: 195 ISKRKITISTSGVVSGIEKILLDKIPIELAVSLHSAINEKRDKIIPINKNFPLEDLSAVL 254
Query: 255 KEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSS 314
EYQK +++++ EYI++D N E A+ L + F VVNLIP+N + V R S
Sbjct: 255 VEYQKRTKRRVTFEYILIDNFNISETDANALADFIHQFDHVVNLIPYNEVEGVEHTRPSV 314
Query: 315 DDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 350
K+ F L+ + T+R++ G DI GACGQL
Sbjct: 315 -KKIDKFYNYLKNVRKVNVTLRQEKGSDIDGACGQL 349
>gi|451823104|ref|YP_007459378.1| ribosomal RNA large subunit methyltransferase N [Candidatus
Kinetoplastibacterium desouzaii TCC079E]
gi|451775904|gb|AGF46945.1| ribosomal RNA large subunit methyltransferase N [Candidatus
Kinetoplastibacterium desouzaii TCC079E]
Length = 371
Score = 207 bits (526), Expect = 9e-51, Method: Compositional matrix adjust.
Identities = 131/345 (37%), Positives = 190/345 (55%), Gaps = 45/345 (13%)
Query: 31 IWKYVIENPNCEWDEFPSLPSAAYSLLR--SKFKPLTSTLHSVVDSSDDVTTKLLVKLQN 88
I+KY ++ +D+ +LP + L+ +K +P++ ++ S D T K L + N
Sbjct: 37 IYKYHVD----SFDQMTNLPVKLRNFLKETAKIEPMSLKTQNI---SSDGTMKWLFDVGN 89
Query: 89 GGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSG 148
G +E V++ P R TLCISSQ GC + C+FC TG GF NL++
Sbjct: 90 GNAIETVLI--------------PDIDRYTLCISSQAGCAVNCSFCYTGQQGFNRNLTTN 135
Query: 149 EIVEQLVHASR-----------------LSNIRNVVFMGMGEPLNNYAALVEAVRIMT-G 190
EI+ QL A + S I NVV MGMGEPL NY ++ A+R+M
Sbjct: 136 EIISQLWWAQKSINDKFPKNNIQDDSLAASKITNVVMMGMGEPLLNYGQVIPALRLMMDD 195
Query: 191 LPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKL 250
+ +S +RIT+ST GIV I+K D P ++LAVSLHAP +R ++MP + +PLE+L
Sbjct: 196 NAYSLSRRRITLSTSGIVPMIDKMAQDCP-VSLAVSLHAPNNSLRNKLMPINKKYPLEEL 254
Query: 251 MNALKEY-QKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQ 309
+ + K Y + + + EY ML+ +ND + HA +L +L+ + VNLIPFN S S
Sbjct: 255 IKSCKNYVSRAPRDFVTFEYCMLENINDNDDHAVELIELISVLKCKVNLIPFNSFPS-SN 313
Query: 310 FRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNL 354
+ SS +++ SF KIL S I TT+RK G DI ACGQL N+
Sbjct: 314 LKRSSLNRILSFAKILNDS-GIITTIRKTRGDDILAACGQLAGNV 357
>gi|334364779|ref|ZP_08513759.1| 23S rRNA m2A2503 methyltransferase [Alistipes sp. HGB5]
gi|313159155|gb|EFR58530.1| 23S rRNA m2A2503 methyltransferase [Alistipes sp. HGB5]
Length = 379
Score = 207 bits (526), Expect = 9e-51, Method: Compositional matrix adjust.
Identities = 116/322 (36%), Positives = 179/322 (55%), Gaps = 25/322 (7%)
Query: 32 WKYV--IENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHSVVDSSDDVTTKLLVKLQNG 89
W Y +E+P + +A + L +F+P + + +S+D T K L + Q G
Sbjct: 71 WLYAKHVEDPM----RMSDIAAAHRAKLAERFRPAFTPPARITESADG-TKKYLYRTQQG 125
Query: 90 GFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGE 149
++E+ + P G R+TLC+SSQ GC+MGC FCATG G + +L++ E
Sbjct: 126 AWIESAYI--------------PDGERATLCVSSQAGCRMGCKFCATGRQGLQHSLTTAE 171
Query: 150 IVEQLVHASRLSNIRNVVFMGMGEPLNNYAALVEAVRIMTG-LPFQVSPKRITVSTVGIV 208
I+ Q+V ++ NVVFMGMGEPL+N ++ A+ IMT F SP RIT+ST G+
Sbjct: 172 ILNQIVSLPERDSLTNVVFMGMGEPLDNTDNVLRALEIMTSEWGFGWSPTRITLSTAGVA 231
Query: 209 HAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIE 268
+ +F D ++LAVSLH P + R IMP RA+P+ ++ L+ Y Q+++ E
Sbjct: 232 PELQRF-LDATKVHLAVSLHNPFHEERAAIMPVERAWPIAEVAAILRRYDFTHQRRVSFE 290
Query: 269 YIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGS 328
YI++ G+ND +H +L +LL+ + +NLI F+ I S F + D+ + F+ L
Sbjct: 291 YIVMSGLNDSPRHIRELCRLLDGIKCRINLIRFHKIPG-SPFFSPDDEAMIRFRDTLTAK 349
Query: 329 YNIRTTVRKQMGQDISGACGQL 350
I+TT+R G+DI ACG L
Sbjct: 350 -GIQTTIRASRGEDIQAACGLL 370
>gi|120601511|ref|YP_965911.1| ribosomal RNA large subunit methyltransferase N [Desulfovibrio
vulgaris DP4]
gi|205829747|sp|A1VAL8.1|RLMN_DESVV RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|120561740|gb|ABM27484.1| 23S rRNA m(2)A-2503 methyltransferase [Desulfovibrio vulgaris DP4]
Length = 364
Score = 207 bits (526), Expect = 9e-51, Method: Compositional matrix adjust.
Identities = 128/332 (38%), Positives = 191/332 (57%), Gaps = 28/332 (8%)
Query: 31 IWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHSVVDSSDDVTTKLLVKLQNGG 90
+W+++ + +DE ++ A + L K +T V S D TTK L++L +G
Sbjct: 30 VWQWLWQKCARSFDEMTNVSKATRARLAEK-AVITWPEVETVQKSADGTTKFLLRLADGA 88
Query: 91 FVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEI 150
VE V++ S R G R T C+S QVGC MGC FC+TGTMGF+ N++ GEI
Sbjct: 89 LVETVLIPSAS---------REGTLRITQCLSCQVGCAMGCTFCSTGTMGFERNMTMGEI 139
Query: 151 VEQ-LVHASRLSN-------IRNVVFMGMGEPLNNYAALVEAVRIMT---GLPFQVSPKR 199
+ Q LV + L + +RN+VFMGMGEPL N ++ ++R + GL F SP+R
Sbjct: 140 LGQVLVARAHLGDSRPDHPILRNLVFMGMGEPLLNLNEVMRSLRTLNDEFGLSF--SPRR 197
Query: 200 ITVSTVGIVHAINKFHSDLPGLN-LAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQ 258
ITVST GI + + GL LAVSLHAP Q++R +IMP A + L+ L+ AL+ Y
Sbjct: 198 ITVSTCGIEKGLRELGES--GLAFLAVSLHAPNQEIRKRIMPKAAHWHLDDLITALESYP 255
Query: 259 KNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKV 318
+++++ EY++L GVND +HA +L +L+ + +NLI +NP + + +++
Sbjct: 256 LKTRERVTFEYLLLGGVNDGIEHARELVRLVSRTKGKLNLIVYNP-AEGDPYDAPTPERI 314
Query: 319 SSFQKILRGSYNIRTTVRKQMGQDISGACGQL 350
+F++ L S NI +RK GQDI ACGQL
Sbjct: 315 LAFEQYL-WSKNITAIIRKSKGQDIKAACGQL 345
>gi|374994652|ref|YP_004970151.1| 2-oxoglutarate synthase subunit, 2-oxoacid-ferredoxin
oxidoreductase subunit CD [Desulfosporosinus orientis
DSM 765]
gi|357213018|gb|AET67636.1| 23S rRNA m2A2503 methyltransferase [Desulfosporosinus orientis DSM
765]
Length = 352
Score = 207 bits (526), Expect = 9e-51, Method: Compositional matrix adjust.
Identities = 117/345 (33%), Positives = 192/345 (55%), Gaps = 30/345 (8%)
Query: 18 FEKAGIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKF--KPLTSTLHSVVDSS 75
++ G K+ LIW Y+ ++ E L L+ F +PL+ H++ +S+
Sbjct: 18 LDERGYKKSRALLIWDYLYRKRVTDFSEMTELKEECRQLVADHFLIQPLSD--HTLQESA 75
Query: 76 DDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCA 135
D T K L KL++ +E V+MR+ L ++C+++QVGC MGC+FCA
Sbjct: 76 DG-TLKFLFKLKDDNLIETVLMRHKFGL--------------SVCVTTQVGCNMGCSFCA 120
Query: 136 TGTMGFKSNLSSGEIVEQLVHASRL-------SNIRNVVFMGMGEPLNNYAALVEAVRIM 188
+G + +L+ GEIV Q++ + + ++V MG+GEP +NY L EA+R++
Sbjct: 121 SGLLKKLRDLTVGEIVGQIMKVQQYLDDHHPGEKVSHMVVMGIGEPFDNYENLAEAIRVL 180
Query: 189 TGLP-FQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPL 247
+ + IT+ST G+ + F +NLA+SLHAP ++R ++MP R FP+
Sbjct: 181 VEQKGISIPSRHITISTSGLADKLYDFADSDLNVNLAISLHAPDNELRTKLMPINRRFPI 240
Query: 248 EKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETF-QVV-VNLIPFNPIG 305
E LM + Y + ++++I IEYIML +ND + A QL L++ + Q+V VNLIP+NP+
Sbjct: 241 ETLMQGINYYLEKTRRRITIEYIMLKDLNDSREAALQLAALIKDWGQLVNVNLIPYNPVD 300
Query: 306 SVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 350
SQ++ + D + +F +LR + I +R ++G DI ACGQL
Sbjct: 301 EHSQYQRTDHDVLLAFYDVLR-KHGINCGIRLEIGSDIDAACGQL 344
>gi|124515329|gb|EAY56839.1| putative radical SAM family protein [Leptospirillum rubarum]
Length = 379
Score = 207 bits (526), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 123/351 (35%), Positives = 188/351 (53%), Gaps = 37/351 (10%)
Query: 33 KYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHSVVDSSDDVTTKLLVKLQNGGFV 92
+++ EW+ +LP ++ L+ + S D T KLL++L G +
Sbjct: 35 QWIFRQNVSEWERMKNLPGDDRRRWSDRWD-LSLPIVRDEKRSRDGTRKLLLELSGGALI 93
Query: 93 EAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVE 152
E+V++ D R+TLC+SSQVGC +GC FC T MG NLS EI+
Sbjct: 94 ESVLIPRDD--------------RATLCVSSQVGCGIGCRFCRTAEMGLVRNLSVSEILG 139
Query: 153 QLVHASRL-------------------SNIRNVVFMGMGEPLNNYAALVEAVRIMTGLP- 192
Q+ A+RL S + ++VFMGMGEPL N+ LV ++ ++T
Sbjct: 140 QVRVANRLLAEAPVRDMSKETDPTPFLSRVNHLVFMGMGEPLANFDHLVRSLAVLTSPEG 199
Query: 193 FQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMN 252
F +S +RITVST G+ I + +NLAVSL AP +++R +MP +R P+ +++
Sbjct: 200 FGLSSRRITVSTSGLAGRIRDLGTSGIAVNLAVSLSAPTEELRENLMPISRHHPIRSILS 259
Query: 253 ALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRT 312
A + Y ++Q+I EY++L GVND E A +L +LL F+ VNLIPFNP S +
Sbjct: 260 ACRAYPLRNRQRITFEYVLLGGVNDGEGQARELARLLAPFRSKVNLIPFNPYPG-SPYHR 318
Query: 313 SSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDKISAKST 363
D+V FQ+IL + + T+R G+DI GACGQL ++ ++ +S+
Sbjct: 319 PDKDRVRRFQEILL-AKGVTATLRTTRGEDILGACGQLALSPSPALTMESS 368
>gi|87308293|ref|ZP_01090434.1| hypothetical protein DSM3645_12021 [Blastopirellula marina DSM
3645]
gi|87288850|gb|EAQ80743.1| hypothetical protein DSM3645_12021 [Blastopirellula marina DSM
3645]
Length = 351
Score = 207 bits (526), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 125/363 (34%), Positives = 199/363 (54%), Gaps = 22/363 (6%)
Query: 1 MTYDYRSVFDGGIIRAEFEKAGIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSK 60
MT D ++A + G+ + I +++EN +++ +LP S L K
Sbjct: 1 MTPHLLQTLDLTSLQALVVQWGLPKFRAQQIRSWIVENRAQSFEDMANLPKPLRSQLAEK 60
Query: 61 FKPLTSTLHSVVDSSDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLC 120
+ L ST + ++ D T KLL++L +GG +E V++R G R T+C
Sbjct: 61 AQ-LWSTEIARHTTAADGTEKLLLQLHDGGRIECVLLR--------------DGDRRTIC 105
Query: 121 ISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRL----SNIRNVVFMGMGEPLN 176
IS+QVGC MGC FCA+G G + NL+ GEI+EQ++ RL + ++V MGMGEPL
Sbjct: 106 ISTQVGCAMGCVFCASGLDGVERNLTVGEIIEQMLRLQRLLPVGERLSHIVVMGMGEPLA 165
Query: 177 NYAALVEAVRIMTGLP-FQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVR 235
N L+ A+ + +S +RIT+STVG+ AI K +LAVSLHAP +R
Sbjct: 166 NVDRLLSALDFASSEEGLGISHRRITISTVGLPPAIRKLADRDSRYHLAVSLHAPDDQLR 225
Query: 236 CQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVV 295
QI+P + + ++ A Y + S +++ EY++L +ND+ +HAH+L KLL +
Sbjct: 226 NQIVPTNKNIGIHAILEAADHYFEISGRRLTFEYVLLAELNDQPEHAHRLAKLLRGRPAL 285
Query: 296 VNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLP 355
+N+IP+NP+ + +RT S + +F+ IL G+ + R++ G I+ ACGQL N P
Sbjct: 286 LNIIPYNPVAGLP-YRTPSKEAQHAFRAILEGA-GLTVKFRQKKGDKINAACGQLRRNTP 343
Query: 356 DKI 358
+ +
Sbjct: 344 ENL 346
>gi|149197716|ref|ZP_01874766.1| hypothetical protein LNTAR_20823 [Lentisphaera araneosa HTCC2155]
gi|149139286|gb|EDM27689.1| hypothetical protein LNTAR_20823 [Lentisphaera araneosa HTCC2155]
Length = 343
Score = 206 bits (525), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 112/303 (36%), Positives = 174/303 (57%), Gaps = 20/303 (6%)
Query: 56 LLRSKFKPLTSTLHSVVDSSDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGP 115
L+R F+ + S DS D +KLLV+ ++G +E VI+R G
Sbjct: 50 LVRDHFEIPQLKIISRQDSKIDGASKLLVQTEDGLNIETVILRI-------------GTG 96
Query: 116 RSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRL-----SNIRNVVFMG 170
R++LCISSQ GC C FC+T T+GFK NL+ EI+ Q++ A + +RN+VFMG
Sbjct: 97 RTSLCISSQAGCTEKCTFCSTATLGFKRNLTLAEIIGQVILAGEILRKEDRKVRNIVFMG 156
Query: 171 MGEPLNNYAALVEAVRIMTGLPFQ-VSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 229
MGEPL N +++++ IM + +S KR+TVST+GI I K P +NLA+SLHA
Sbjct: 157 MGEPLRNTDNVLKSLEIMLSSAYMGLSSKRVTVSTIGITDNITKLRHSFPEVNLALSLHA 216
Query: 230 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLL 289
VR +MP + FP+E + L Q+ + + I+Y+++ +ND + A +L L
Sbjct: 217 SNDQVRDILMPINKTFPMETIKETLLSAQELASGDLMIQYLLIKDLNDSPEQAQELAAFL 276
Query: 290 ETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQ 349
+ ++NLIP+N + ++ SS++K+S+FQ +L+ S + + T R +G+DI ACGQ
Sbjct: 277 KGINCIINLIPYNDSMGMGNWKCSSEEKMSAFQDVLQES-DFQVTRRHSLGRDIDAACGQ 335
Query: 350 LVV 352
L
Sbjct: 336 LAA 338
>gi|315658497|ref|ZP_07911369.1| cfr family radical SAM enzyme [Staphylococcus lugdunensis M23590]
gi|315496826|gb|EFU85149.1| cfr family radical SAM enzyme [Staphylococcus lugdunensis M23590]
Length = 364
Score = 206 bits (525), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 116/327 (35%), Positives = 184/327 (56%), Gaps = 25/327 (7%)
Query: 31 IWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHSVV-DSSDDVTTKLLVKLQNG 89
I++++ + ++E +L LL F + +TL +VV S D T K L +LQ+G
Sbjct: 46 IYEWLYQKRVNSFEEMTNLSKDLRKLLADHF--VMTTLTTVVKQESKDGTIKFLFELQDG 103
Query: 90 GFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGE 149
+E V+MR+D +++C+++QVGC++GC FCA+ G K NL +GE
Sbjct: 104 YTIETVLMRHDYG--------------NSVCVTTQVGCRIGCTFCASTLGGLKRNLEAGE 149
Query: 150 IVEQLVHASRL-----SNIRNVVFMGMGEPLNNYAALVEAVRIMTGL-PFQVSPKRITVS 203
IV Q++ + + +V MG+GEP NY +++ +RI+ + + ITVS
Sbjct: 150 IVSQVLTVQKALDATEERVSQIVIMGIGEPFENYDEMMDFLRIVNDDNSLNIGARHITVS 209
Query: 204 TVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQ 263
T GIV I F + +N AVSLHA DVR ++MP RA+ ++KLM A++ YQ+ + +
Sbjct: 210 TSGIVPRIYDFADEEIQINFAVSLHAAKDDVRSKLMPINRAYNVDKLMEAIRYYQQKTNR 269
Query: 264 KIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQK 323
+I EY + GVND+ +HA +L L++ VNLIP N + + +TS DD + F+K
Sbjct: 270 RITFEYGLFGGVNDQLEHARELAHLIKNLNCHVNLIPVNHVPERNYVKTSKDD-IFKFEK 328
Query: 324 ILRGSYNIRTTVRKQMGQDISGACGQL 350
L+ + T+R++ G DI ACGQL
Sbjct: 329 ELK-RLGVNATIRREQGSDIDAACGQL 354
>gi|383784040|ref|YP_005468608.1| radical SAM family protein [Leptospirillum ferrooxidans C2-3]
gi|383082951|dbj|BAM06478.1| putative radical SAM family protein [Leptospirillum ferrooxidans
C2-3]
Length = 372
Score = 206 bits (525), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 132/363 (36%), Positives = 192/363 (52%), Gaps = 46/363 (12%)
Query: 32 WKY------VIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHSVVDSSDDVTTKLLVK 85
W+Y V + EWD +L L S+ + +V++S D T K+L +
Sbjct: 24 WRYDQIADWVFQKEISEWDLMKNLSKGLQEALSSQVSLTLPKVLNVLESKDG-TKKILFQ 82
Query: 86 LQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNL 145
L++ +E+VI+ P G R+TLCISSQVGC +GC FC T MG NL
Sbjct: 83 LKDEQMIESVII--------------PRGDRATLCISSQVGCGIGCKFCRTAEMGLIRNL 128
Query: 146 SSGEIVEQLVHASR--------------------LSNIRNVVFMGMGEPLNNYAALVEAV 185
+ GEIV Q++ A++ L+ + ++VFMGMGEPL N ++ ++
Sbjct: 129 TMGEIVGQVIMANKILKENPIKDGSTSNLEDQPLLNRVNHIVFMGMGEPLANLDQVINSI 188
Query: 186 RIMTGLP-FQVSPKRITVSTVGIVHAINKF-HSDLPGLNLAVSLHAPVQDVRCQIMPAAR 243
R +T +SP+RITVST G+ I + S +P +NLAVSL A R ++MP R
Sbjct: 189 RTLTSSDGLGMSPRRITVSTSGLPSKIIELGQSGIP-VNLAVSLTAADDPTREKLMPINR 247
Query: 244 AFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNP 303
+P+ +++A+++ +Q++ EY++L GVND + A +L +LL F+ VNLIPFNP
Sbjct: 248 HYPIRAILDAIRQLPLKKRQRVTFEYVLLSGVNDRPEDAKKLARLLAPFKSKVNLIPFNP 307
Query: 304 IGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDKISAKST 363
S F + S D V FQKIL + TT+R+ G DI GACGQL I S
Sbjct: 308 YEG-SPFVSPSKDDVLLFQKILLEKM-VATTIRQSRGDDILGACGQLAWEKKTAIKETSW 365
Query: 364 PPV 366
PV
Sbjct: 366 NPV 368
>gi|157364703|ref|YP_001471470.1| ribosomal RNA large subunit methyltransferase N [Thermotoga
lettingae TMO]
gi|205829915|sp|A8F8C2.1|RLMN_THELT RecName: Full=Probable dual-specificity RNA methyltransferase RlmN;
AltName: Full=23S rRNA
(adenine(2503)-C(2))-methyltransferase; AltName:
Full=23S rRNA m2A2503 methyltransferase; AltName:
Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=tRNA (adenine(37)-C(2))-methyltransferase;
AltName: Full=tRNA m2A37 methyltransferase
gi|157315307|gb|ABV34406.1| radical SAM enzyme, Cfr family [Thermotoga lettingae TMO]
Length = 343
Score = 206 bits (525), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 119/339 (35%), Positives = 195/339 (57%), Gaps = 20/339 (5%)
Query: 17 EFEKAGIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHSVVDSSD 76
+ ++ G++++ I ++ + +++ +L SLLR F + S SS
Sbjct: 14 KIQELGLEKYRADQILDWIYKKHVFVFEQMTNLSKQHRSLLRENFCIQIPKIVSKRVSSI 73
Query: 77 DVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCAT 136
D TTK L +L +G +E+V++ ++ +T CIS+Q+GC + C+FCAT
Sbjct: 74 DKTTKYLYELSDGNTIESVLLFHEGY--------------ATACISTQIGCPVKCSFCAT 119
Query: 137 GTMGFKSNLSSGEIVEQLVHASRLSN--IRNVVFMGMGEPLNNYAALVEAVRIMTGLPFQ 194
G GF NL +GEIV Q++ + S +RN+V+MGMGEPL NY ++++++I+ +
Sbjct: 120 GQSGFVRNLDAGEIVSQILAIEKDSKQTVRNIVYMGMGEPLLNYDNVIKSIKILIDKKTK 179
Query: 195 -VSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNA 253
+ +R+T+STVGI I K + LNLA+SLHA + R QI+P R + +++++NA
Sbjct: 180 NIGIRRVTLSTVGIPEMILKLSEERLDLNLAISLHASTNEKRDQIIPINRKYSIQEIINA 239
Query: 254 LKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTS 313
K YQ+ S +++ IEYI++ ND ++ A +L KLL +V VNLIP N + S F
Sbjct: 240 AKNYQERSDRRLTIEYILIKEFNDFDEDARKLAKLLNGLKVFVNLIPVN--STFSNFEKP 297
Query: 314 SDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVV 352
+ K++ F++IL S I +R + G DI ACGQL +
Sbjct: 298 AKWKINRFKEILINS-GIEAEIRYEKGADIEAACGQLRI 335
>gi|218282588|ref|ZP_03488826.1| hypothetical protein EUBIFOR_01408 [Eubacterium biforme DSM 3989]
gi|218216459|gb|EEC89997.1| hypothetical protein EUBIFOR_01408 [Eubacterium biforme DSM 3989]
Length = 336
Score = 206 bits (525), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 121/332 (36%), Positives = 186/332 (56%), Gaps = 31/332 (9%)
Query: 31 IWKYVIENPNCEWDEFPSLPSAAYSLLRSKF--KPLTSTLHSVVDSSDDVTTKLLVKLQN 88
I++++ N + DE ++ +L+ F PL V S D TTK L K +
Sbjct: 18 IFQWLYRNRVFDIDEMTNVSKETREILKKDFIVNPLELIKKQV---SHDGTTKFLFKTSD 74
Query: 89 GGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSG 148
G +E+V+M +D ++C+SSQVGC MGC FCA+G K +L+SG
Sbjct: 75 GALLESVMMVFDYG--------------RSVCVSSQVGCNMGCAFCASGLTKKKRDLTSG 120
Query: 149 EIVEQLVHASR---LSNIR--NVVFMGMGEPLNNYAALVEAVRIMT---GLPFQVSPKRI 200
E+V Q+++ + N+R ++V MG GEP +NY ++ + + GL + + I
Sbjct: 121 EMVAQVMYVQKELDKDNLRLSHIVVMGTGEPFDNYDNVMNFLATVNHDRGLG--IGSRHI 178
Query: 201 TVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKN 260
T+ST GIV I F ++ NLA+SLHAP ++R Q+MP A+PL++LM A++ Y K
Sbjct: 179 TISTCGIVPRIYDFANEHTQYNLAISLHAPNDELRDQLMPVNHAYPLKELMEAIQYYGKE 238
Query: 261 SQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSS 320
+ +++ EYI+L GVND +HA QL KLL VNLIP+N + F++ + D+
Sbjct: 239 NNRRLTFEYILLKGVNDHPEHAKQLSKLLHGMNAYVNLIPYNAVDE-KGFKSVTHDEAMV 297
Query: 321 FQKILRGSYNIRTTVRKQMGQDISGACGQLVV 352
F +L +Y +R T+RK+ G DI ACGQL +
Sbjct: 298 FYDLLMKNY-VRCTIRKEHGNDIDAACGQLRI 328
>gi|343085190|ref|YP_004774485.1| ribosomal RNA large subunit methyltransferase N [Cyclobacterium
marinum DSM 745]
gi|342353724|gb|AEL26254.1| Ribosomal RNA large subunit methyltransferase N [Cyclobacterium
marinum DSM 745]
Length = 349
Score = 206 bits (525), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 125/347 (36%), Positives = 185/347 (53%), Gaps = 30/347 (8%)
Query: 14 IRAEFEKAGIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHSVVD 73
+ A F G K+ +++++ +DE ++ + +L+ F + H +VD
Sbjct: 17 LEAYFLSVGEKKFRAKQVYEWLWNKSLKNFDEMSNISKSTREILKENF----TINHILVD 72
Query: 74 S---SDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMG 130
S D T K VKL + VE+V++ P R T C+SSQVGC +
Sbjct: 73 QFQRSTDGTIKNAVKLYDNNIVESVLI--------------PTSKRITACVSSQVGCSLD 118
Query: 131 CNFCATGTMGFKSNLSSGEIVEQLVHASRLSNI------RNVVFMGMGEPLNNYAALVEA 184
CNFCAT + NL+ EI +Q+V +++ N+VFMGMGEPL NY ++ A
Sbjct: 119 CNFCATARLKRMRNLNPDEIYDQVVAIQEEASLYFDRPLTNIVFMGMGEPLLNYQNVLSA 178
Query: 185 V-RIMTGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAAR 243
+ +I + +SPKRIT+STVGI I K D NLA+SLH+ + + R ++MP
Sbjct: 179 IEKICSPEGLGISPKRITLSTVGIGKMIRKLADDEVKFNLALSLHSAINETRTRLMPINE 238
Query: 244 AFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNP 303
+E L ALK + +++K+ EY++ DG+ND+E+HA L K + VN+I +NP
Sbjct: 239 TNTVEDLAMALKYWYSKTKRKVTYEYVIWDGINDDEKHARALAKFCKHIPSKVNIIQYNP 298
Query: 304 IGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 350
I +FR +S DK+ + IL GS I VRK GQDI ACGQL
Sbjct: 299 IDE-GEFRQASQDKIDLYLSILEGS-GIIANVRKSRGQDIDAACGQL 343
>gi|34763242|ref|ZP_00144204.1| Radical SAM family enzyme [Fusobacterium nucleatum subsp. vincentii
ATCC 49256]
gi|27887095|gb|EAA24204.1| Radical SAM family enzyme [Fusobacterium nucleatum subsp. vincentii
ATCC 49256]
Length = 358
Score = 206 bits (525), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 123/336 (36%), Positives = 187/336 (55%), Gaps = 17/336 (5%)
Query: 22 GIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSK-FKPLTSTLHSVVDSSDDVTT 80
G+K+ + ++ ++ + +DE +L +L+ K + P + L V S D T
Sbjct: 24 GLKKFYGKEVFIWLHKKITRSFDEMTNLSLKDREILKEKTYIPFFNLLKYQV-SKIDKTE 82
Query: 81 KLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMG 140
K L +L++GG +E V++R+ S K R R+TLC+SSQVGC + C+FCATG G
Sbjct: 83 KFLFELEDGGTIETVLLRHKDS------KNRE--IRNTLCVSSQVGCPVKCSFCATGQSG 134
Query: 141 FKSNLSSGEIVEQLVHASRL-----SNIRNVVFMGMGEPLNNYAALVEAVRIMTGLP-FQ 194
+ NLS EI+ Q+ R + N+VFMGMGEPL N L +++ I++
Sbjct: 135 YMRNLSVSEILNQIYIVERRLRKKGETLNNLVFMGMGEPLLNIDNLAKSLSIISNENGVN 194
Query: 195 VSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNAL 254
+S ++IT+ST G+V I K D + LA+SLH+ + + R +I+P + FPLE L L
Sbjct: 195 ISKRKITISTSGVVSGIEKILLDKIPIELAISLHSAINEKRDKIIPLNKNFPLEDLSAVL 254
Query: 255 KEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSS 314
EYQK ++++I EYI++D N E A+ L + F VVNLIP+N + V R S
Sbjct: 255 VEYQKQTKRRITFEYILIDNFNISETDANALADFIHQFDHVVNLIPYNEVEGVEHTRPSV 314
Query: 315 DDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 350
K+ F L+ + T+R++ G DI GACGQL
Sbjct: 315 -KKIDKFYNYLKNIRKVNVTLRQEKGSDIDGACGQL 349
>gi|431741675|ref|ZP_19530578.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E2039]
gi|430601407|gb|ELB39013.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E2039]
Length = 355
Score = 206 bits (525), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 122/356 (34%), Positives = 190/356 (53%), Gaps = 30/356 (8%)
Query: 18 FEKAGIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKF--KPLTSTLHSVVDSS 75
F + G K+ +W+++ + + E +L L + F PL VV +
Sbjct: 18 FIENGEKKFRAAQVWEWLYQKRVSNFTEMTNLSKQLIEKLSAHFIINPLKQM---VVQEA 74
Query: 76 DDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCA 135
D T K L +L + +E V+MR + L ++C+++QVGC +GC FCA
Sbjct: 75 SDGTVKYLFELPDKNMIETVLMRQEYGL--------------SVCVTTQVGCNIGCTFCA 120
Query: 136 TGTMGFKSNLSSGEIVEQLVHASRLSNIRN-------VVFMGMGEPLNNYAALVEAVRIM 188
+G + +L++GEIV Q++ + RN VV MG+GEP +NY +++ + I+
Sbjct: 121 SGLLKKNRDLTAGEIVAQIMMVQHYFDERNLGERVSHVVVMGIGEPFDNYDNVMDFLHII 180
Query: 189 TGLP-FQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPL 247
+ + ITVST G+ H I +F ++ +NLA+SLHAP +VR IM R+FP+
Sbjct: 181 NDAKGLAIGARHITVSTSGLAHKIKEFANNGLQVNLAISLHAPNNEVRTSIMRINRSFPI 240
Query: 248 EKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQ--VVVNLIPFNPIG 305
EKLM A+ EY + + ++I EYIML+ VND +HA QL LL+ + VNLIP+NP+
Sbjct: 241 EKLMEAVDEYLEKTNRRITFEYIMLNQVNDRPEHAQQLADLLKDKKKLAYVNLIPYNPVS 300
Query: 306 SVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDKISAK 361
Q+ S V F +L+ + + +RK+ G DI+ ACGQL K +AK
Sbjct: 301 ERDQYSRSPKADVLRFYDVLKKN-GVNCVIRKEHGTDINAACGQLRSKQMKKTAAK 355
>gi|239815175|ref|YP_002944085.1| Cfr family radical SAM protein [Variovorax paradoxus S110]
gi|239801752|gb|ACS18819.1| radical SAM enzyme, Cfr family [Variovorax paradoxus S110]
Length = 382
Score = 206 bits (524), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 128/299 (42%), Positives = 167/299 (55%), Gaps = 30/299 (10%)
Query: 75 SDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFC 134
S D T K L + +G VEAV + P R TLC+SSQ GC +GC FC
Sbjct: 74 SKDGTIKWLFDVGDGNAVEAVFI--------------PEDDRGTLCVSSQAGCAVGCRFC 119
Query: 135 ATGTMGFKSNLSSGEIVEQLVHASRLSN---------IRNVVFMGMGEPLNNYAALVEAV 185
+TG GF NLS+GEIV QL A I NVV MGMGEPL NY ALV A+
Sbjct: 120 STGHQGFSRNLSTGEIVAQLWFAEHFLRKHLKRDERVISNVVMMGMGEPLQNYTALVPAL 179
Query: 186 RIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARA 244
R M + +S +R+TVST G+V I++ +D P + +AVSLHAP +R ++P R
Sbjct: 180 RTMLDDNAYGLSRRRVTVSTSGVVPMIDRLGADCP-VAMAVSLHAPNDALRDDLVPLNRK 238
Query: 245 FPLEKLMNALKEYQKNSQQK-IFIEYIMLDGVNDEEQHAHQLGKLLETFQVVV--NLIPF 301
+P+ +L+ A K Y ++ + I EY MLDGVND+ +HA QL +L+ T V NLIPF
Sbjct: 239 YPIAELLEACKRYLVHAPRDFITFEYCMLDGVNDQPEHARQLVELVRTHGVSCKFNLIPF 298
Query: 302 NPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDKISA 360
NP + R S +V +F K L + TTVRK G DI ACGQL ++ D+ A
Sbjct: 299 NPFPASGLLR-SPQPRVLAFAKAL-SEAGLVTTVRKTRGDDIDAACGQLAGDVKDRTRA 355
>gi|390951014|ref|YP_006414773.1| 23S rRNA m(2)A-2503 methyltransferase [Thiocystis violascens DSM
198]
gi|390427583|gb|AFL74648.1| 23S rRNA m(2)A-2503 methyltransferase [Thiocystis violascens DSM
198]
Length = 365
Score = 206 bits (524), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 129/342 (37%), Positives = 197/342 (57%), Gaps = 26/342 (7%)
Query: 22 GIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHSVVDS--SDDVT 79
G+K ++K+V ++ E+D L + LR + L +V++ S+D T
Sbjct: 26 GVKAFHGRNLFKWVHKHGVVEFDAMTDLSRSLRETLRETVE---IRLPRIVEAHPSEDGT 82
Query: 80 TKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTM 139
K +++L +G +E V + P G RST+C+SSQVGC + C FCAT
Sbjct: 83 IKWIMELHDGQRIETVFI--------------PEGRRSTICVSSQVGCALECAFCATARQ 128
Query: 140 GFKSNLSSGEIVEQLVHASRLSNI--RNVVFMGMGEPLNNYAALVEAVRIMT-GLPFQVS 196
GF NL+ EI+ Q+ HA+R + NVV MGMGEPL N+ ++V+A+ IM L + ++
Sbjct: 129 GFNRNLAVSEIIGQVWHAARQLDKPPTNVVMMGMGEPLANFESVVKAMDIMQDDLAYMLA 188
Query: 197 PKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKE 256
+R+T+ST GIV I + ++ ++LAVSLHAP +R Q++P R +PL +L+ A K
Sbjct: 189 KQRVTLSTSGIVPNIYRLR-EVSDVSLAVSLHAPNDALRDQLVPINRKYPLAELLPACKA 247
Query: 257 Y-QKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSD 315
Y ++ ++K+ EY+MLDG+ND HA QL +LLE +NLIPFNP S F TS
Sbjct: 248 YIGQDKRRKVTWEYVMLDGINDSLAHAKQLIRLLEGIPSKLNLIPFNPFAG-SDFGTSPP 306
Query: 316 DKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDK 357
+++ +F+ L + I RK G +I+ ACGQLV + D+
Sbjct: 307 ERIEAFRLRLTRA-GIFAMTRKTRGDEIAAACGQLVGRVEDR 347
>gi|328951573|ref|YP_004368908.1| ribosomal RNA large subunit methyltransferase N [Marinithermus
hydrothermalis DSM 14884]
gi|328451897|gb|AEB12798.1| Ribosomal RNA large subunit methyltransferase N [Marinithermus
hydrothermalis DSM 14884]
Length = 353
Score = 206 bits (524), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 122/320 (38%), Positives = 174/320 (54%), Gaps = 23/320 (7%)
Query: 42 EWDEFPSLPSAAYSLLRSKFKPLTSTLHSVVDSSDDVTTKLLVKLQNGGFVEAVIMRYDS 101
E+DE LP A + L ++ +L S+D +TK L L +G EAV M Y
Sbjct: 51 EFDEMTDLPRALRAELAHTWRISEFSLVQAFPSADG-STKYLYTLHDGRQTEAVYMPYKD 109
Query: 102 SLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLS 161
R T+CISS VGC GC FCATG M F NL++ EI++QL+ A+
Sbjct: 110 --------------RRTICISSMVGCPAGCTFCATGQMRFGRNLTAPEILDQLLAAAYHQ 155
Query: 162 -----NIRNVVFMGMGEPLNNYAALVEAVRIMT-GLPFQVSPKRITVSTVGIVHAINKFH 215
IRNVV MGMGEPL N +++AVR M +SP+RIT+STVGI I +
Sbjct: 156 GISPREIRNVVLMGMGEPLLNLTNVLKAVRRMIHKQALAMSPRRITLSTVGIPRGIYRLA 215
Query: 216 SDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGV 275
+ G+ LA+SLHAP + R +I+P A + +E++M+A++ Y + +++++ +EY +L GV
Sbjct: 216 EEDVGVKLALSLHAPDDETRRRIIPTAHRYAIEEIMDAVRHYYRRTKRRVTLEYTLLRGV 275
Query: 276 NDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTV 335
ND A L K VNLIPFNP SS +++ F +L + I +V
Sbjct: 276 NDHLWQAKMLAKHTRGLTAHVNLIPFNPWEGAPH-EGSSREQIRRFAAVLEAA-GIPVSV 333
Query: 336 RKQMGQDISGACGQLVVNLP 355
R G+D+ ACGQL + P
Sbjct: 334 RWSRGRDVGAACGQLALRTP 353
>gi|385784623|ref|YP_005760796.1| hypothetical protein SLUG_16850 [Staphylococcus lugdunensis
N920143]
gi|418414298|ref|ZP_12987513.1| ribosomal RNA large subunit methyltransferase N [Staphylococcus
lugdunensis ACS-027-V-Sch2]
gi|339894879|emb|CCB54176.1| conserved hypothetical protein [Staphylococcus lugdunensis N920143]
gi|410876905|gb|EKS24802.1| ribosomal RNA large subunit methyltransferase N [Staphylococcus
lugdunensis ACS-027-V-Sch2]
Length = 364
Score = 206 bits (524), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 116/327 (35%), Positives = 184/327 (56%), Gaps = 25/327 (7%)
Query: 31 IWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHSVV-DSSDDVTTKLLVKLQNG 89
I++++ + ++E +L LL F + +TL +VV S D T K L +LQ+G
Sbjct: 46 IYEWLYQKRVNSFEEMTNLSKDLRKLLADHF--VMTTLTTVVKQESKDGTIKFLFELQDG 103
Query: 90 GFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGE 149
+E V+MR+D +++C+++QVGC++GC FCA+ G K NL +GE
Sbjct: 104 YTIETVLMRHDYG--------------NSVCVTTQVGCRIGCTFCASTLGGLKRNLEAGE 149
Query: 150 IVEQLVHASRL-----SNIRNVVFMGMGEPLNNYAALVEAVRIMTGL-PFQVSPKRITVS 203
IV Q++ + + +V MG+GEP NY +++ +RI+ + + ITVS
Sbjct: 150 IVSQVLTVQKALDATEERVSQIVIMGIGEPFENYDEMMDFLRIVNDDNSLNIGARHITVS 209
Query: 204 TVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQ 263
T GIV I F + +N AVSLHA DVR ++MP RA+ ++KLM A++ YQ+ + +
Sbjct: 210 TSGIVPRIYDFADEGIQINFAVSLHAAKDDVRSKLMPINRAYNVDKLMEAIRYYQQKTNR 269
Query: 264 KIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQK 323
+I EY + GVND+ +HA +L L++ VNLIP N + + +TS DD + F+K
Sbjct: 270 RITFEYGLFGGVNDQLEHARELAHLIKNLNCNVNLIPVNHVPERNYVKTSKDD-IFKFEK 328
Query: 324 ILRGSYNIRTTVRKQMGQDISGACGQL 350
L+ + T+R++ G DI ACGQL
Sbjct: 329 ELK-RLGVNATIRREQGSDIDAACGQL 354
>gi|325568408|ref|ZP_08144775.1| cfr family radical SAM enzyme [Enterococcus casseliflavus ATCC
12755]
gi|325158177|gb|EGC70330.1| cfr family radical SAM enzyme [Enterococcus casseliflavus ATCC
12755]
Length = 361
Score = 206 bits (524), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 120/334 (35%), Positives = 185/334 (55%), Gaps = 34/334 (10%)
Query: 31 IWKYVIENPNCEWDEFPSLPSAAYSLLRSKF--KPLTSTLHSVVDSSDDVTTKLLVKLQN 88
+W+++ E ++E +LP L + F PL VV + D T K L +L +
Sbjct: 36 VWEWLYEKRVTSFEEMTNLPKPLIEKLSAAFVINPLKQM---VVQEASDGTVKYLFQLPD 92
Query: 89 GGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSG 148
+E V+MR + + ++C+++QVGC +GC FCA+G + + +L++G
Sbjct: 93 NHMIETVLMRQEYGM--------------SVCVTTQVGCNIGCTFCASGLLKKQRDLTAG 138
Query: 149 EIVEQLVHASRLSNIRN-------VVFMGMGEPLNNYAALVEAVRIMT---GLPFQVSPK 198
EIV Q++ + RN VV MG+GEP +NY ++ ++I+ GL + +
Sbjct: 139 EIVAQIMLVQHYFDERNEGERVSHVVVMGIGEPFDNYDNVMHFLQIINDPKGLA--IGAR 196
Query: 199 RITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQ 258
ITVST G+ H I +F + +NLA+SLHAP +VR +M R+FP+EKLM A+ Y
Sbjct: 197 HITVSTSGLAHKIKEFAENGLQVNLAISLHAPNNEVRTSMMRINRSFPIEKLMAAVDYYL 256
Query: 259 KNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVV--VNLIPFNPIGSVSQFRTSSDD 316
+ + ++I EYIMLD VND +HA QL LL+ + + VNLIP+NP+ Q+ S
Sbjct: 257 EKTNRRITFEYIMLDHVNDRPEHARQLAALLKDKKKLSYVNLIPYNPVSEHDQYARSKKA 316
Query: 317 KVSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 350
V +F IL+ + I +RK+ G DI ACGQL
Sbjct: 317 DVLAFYDILKKN-GINCVIRKEHGTDIDAACGQL 349
>gi|389580858|ref|ZP_10170885.1| 23S rRNA m2A2503 methyltransferase [Desulfobacter postgatei 2ac9]
gi|389402493|gb|EIM64715.1| 23S rRNA m2A2503 methyltransferase [Desulfobacter postgatei 2ac9]
Length = 346
Score = 206 bits (524), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 128/343 (37%), Positives = 187/343 (54%), Gaps = 28/343 (8%)
Query: 18 FEKAGIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHSVVDSSDD 77
FE GI++ ++K++ ++E L A L F T L ++ ++S D
Sbjct: 16 FENKGIRRFRADQVFKWLHLKLADSFEEMTDLGKALRGELAEHFFLGTLELENM-ETSVD 74
Query: 78 VTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATG 137
T K L +L +G +VE+V++ P TLC+S+Q GC M C FC T
Sbjct: 75 ATKKFLHRLADGEYVESVLI--------------PEKEHYTLCVSTQAGCAMNCKFCLTA 120
Query: 138 TMGFKSNLSSGEIVEQLVHASRLS--------NIRNVVFMGMGEPLNNYAALVEAVRIM- 188
GFK NL+ GEIV Q+ A R ++ N+VFMGMGEPL NY L+ ++ ++
Sbjct: 121 KTGFKRNLTMGEIVGQVRDARRFVAQQGIEPLSLSNIVFMGMGEPLANYDNLLRSLGVIF 180
Query: 189 -TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPL 247
T + S +++TVST GI I + D +NLAVSL+A ++R +MP R +P+
Sbjct: 181 DTDFGMKFSRRKVTVSTSGIAPKIIQLGLDTE-VNLAVSLNATDNELRSSLMPVNRTWPI 239
Query: 248 EKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSV 307
E L+ A KE++ + KI EYI++ GVND + HAH L +LL + VNLIPFN
Sbjct: 240 EALLAACKEFEMKPRNKITFEYILMSGVNDSDAHAHDLVRLLSPIRAKVNLIPFNE-HPQ 298
Query: 308 SQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 350
+ F+ S D++++F IL + N+ VRK G DIS ACGQL
Sbjct: 299 APFKRPSRDRINAFLTILL-NRNMTAIVRKSKGDDISAACGQL 340
>gi|218886526|ref|YP_002435847.1| ribosomal RNA large subunit methyltransferase N [Desulfovibrio
vulgaris str. 'Miyazaki F']
gi|254807169|sp|B8DRU2.1|RLMN_DESVM RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|218757480|gb|ACL08379.1| radical SAM enzyme, Cfr family [Desulfovibrio vulgaris str.
'Miyazaki F']
Length = 367
Score = 206 bits (524), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 126/332 (37%), Positives = 187/332 (56%), Gaps = 28/332 (8%)
Query: 31 IWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHSVVDSSDDVTTKLLVKLQNGG 90
+W+++ + +D ++ A + L + + +V SSD T K L+ L +G
Sbjct: 30 VWQWLWQKNARSFDAMTNVSKATRARLAEAARITWPEVRTVKTSSDG-TVKFLLALADGA 88
Query: 91 FVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEI 150
VE V++ +S R G R T C+S QVGC MGC FC+TG+MGF+ N++ EI
Sbjct: 89 LVETVLIPSES---------REGKVRMTQCLSCQVGCAMGCTFCSTGSMGFERNMTMAEI 139
Query: 151 VEQ-LVHASRLSN-------IRNVVFMGMGEPLNNYAALVEAVRIMT---GLPFQVSPKR 199
+ Q LV L + +RN+VFMGMGEPL N ++ ++R + GL F SP+R
Sbjct: 140 LGQVLVAREHLGDDRPDHPIVRNLVFMGMGEPLLNLNEVMRSLRTLNDEFGLCF--SPRR 197
Query: 200 ITVSTVGIVHAINKFHSDLPGLN-LAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQ 258
ITVST GI + + GL LAVSLHAP Q+VR +IMP A + L+ LM AL+ Y
Sbjct: 198 ITVSTCGIEKGLRELGES--GLAFLAVSLHAPNQEVRARIMPRAARWTLDDLMAALESYP 255
Query: 259 KNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKV 318
++++I EY++L GVND HA +L +L+ + +NLI +NP + + S ++
Sbjct: 256 LKTRERITFEYLLLGGVNDSIDHARELVRLVSRTKAKLNLIVYNPAEGLP-YEAPSQARI 314
Query: 319 SSFQKILRGSYNIRTTVRKQMGQDISGACGQL 350
+F++ L S N+ +RK GQDI ACGQL
Sbjct: 315 LAFEQYL-WSKNVTAIIRKSKGQDIKAACGQL 345
>gi|206601630|gb|EDZ38113.1| Putative radical SAM family protein [Leptospirillum sp. Group II
'5-way CG']
Length = 379
Score = 206 bits (524), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 124/353 (35%), Positives = 188/353 (53%), Gaps = 37/353 (10%)
Query: 31 IWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHSVVDSSDDVTTKLLVKLQNGG 90
I +++ EW+ +LP S+ L+ + S D T K L++L +G
Sbjct: 33 IAQWIFRQNASEWERMNNLPGEDRRRW-SEIWDLSLPIVRDEKRSRDGTRKFLLELSDGA 91
Query: 91 FVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEI 150
+E+V++ D R+TLC+SSQVGC +GC FC T MG NLS EI
Sbjct: 92 LIESVLIPRDD--------------RATLCVSSQVGCGIGCRFCRTAEMGLIRNLSVSEI 137
Query: 151 VEQLVHASRL-------------------SNIRNVVFMGMGEPLNNYAALVEAVRIMTGL 191
+ Q+ A+RL S + ++VFMGMGEPL N+ LV ++ ++T
Sbjct: 138 LGQVRVANRLLAESPVRDMSKETEPAPLLSRVNHLVFMGMGEPLANFDHLVRSLAVLTSP 197
Query: 192 P-FQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKL 250
F +S +RITVST G+ I + +NLAVSL AP +++R +MP +R P+ +
Sbjct: 198 EGFGLSSRRITVSTSGLAGRIRDLGTSGIAVNLAVSLSAPTEELRENLMPISRHHPIRSI 257
Query: 251 MNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQF 310
++A + Y ++Q+I EY++L GVND E A +L +LL F+ VNLIPFNP S +
Sbjct: 258 LSACRAYPLRNRQRITFEYVLLGGVNDGEGQARELARLLAPFRSKVNLIPFNPYPG-SPY 316
Query: 311 RTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDKISAKST 363
D+V FQ+IL + T+R G+DI GACGQL ++ ++ +S+
Sbjct: 317 HRPDKDRVRRFQEILLAK-GVTATLRTTRGEDILGACGQLALSPSPALTMESS 368
>gi|381159927|ref|ZP_09869159.1| 23S rRNA m2A2503 methyltransferase [Thiorhodovibrio sp. 970]
gi|380877991|gb|EIC20083.1| 23S rRNA m2A2503 methyltransferase [Thiorhodovibrio sp. 970]
Length = 368
Score = 206 bits (524), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 128/325 (39%), Positives = 189/325 (58%), Gaps = 22/325 (6%)
Query: 31 IWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHSVVDSSDDVTTKLLVKLQNGG 90
++K+V ++ ++D LP+A L + P ++ + D T K +++L +G
Sbjct: 39 LFKWVHKHGVLDFDLMTDLPAAMRQSLALRC-PCELPRIALEQPAPDGTVKWILELGDGQ 97
Query: 91 FVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEI 150
VE V + P G R TLC+SSQVGC + C FCAT GF NL+ GEI
Sbjct: 98 RVETVFI--------------PEGKRRTLCVSSQVGCALDCRFCATAREGFSRNLTPGEI 143
Query: 151 VEQLVHASRLSNI--RNVVFMGMGEPLNNYAALVEAVRIMT-GLPFQVSPKRITVSTVGI 207
+ Q+ A+R + + NVV MGMGEPL N+ A+V+A+ +M L + ++ R+T+ST G+
Sbjct: 144 IGQVWAATRRTGLAPTNVVLMGMGEPLANFDAVVQAMAVMQHDLAYMLAKTRVTLSTSGL 203
Query: 208 VHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQ-KNSQQKIF 266
V I + ++ ++LAVSLHAP +R +++P R +PLE+L+ A K Y + +++I
Sbjct: 204 VPNIYRL-KEVADVSLAVSLHAPDNALRDELVPINRKYPLEELIPACKAYAGSDKRRRIT 262
Query: 267 IEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILR 326
EY+MLDGVND HA L +LLE VNLIPFNP S F TS ++V +F+ L
Sbjct: 263 WEYVMLDGVNDSLAHAKALIRLLEGVPSKVNLIPFNPFAG-SGFATSPPERVDAFRLRLI 321
Query: 327 GSYNIRTTVRKQMGQDISGACGQLV 351
G+ + TT RK G I+ ACGQLV
Sbjct: 322 GA-GLVTTTRKTRGDGIAAACGQLV 345
>gi|83589757|ref|YP_429766.1| hypothetical protein Moth_0906 [Moorella thermoacetica ATCC 39073]
gi|123752954|sp|Q2RK16.1|RLMN_MOOTA RecName: Full=Probable dual-specificity RNA methyltransferase RlmN;
AltName: Full=23S rRNA
(adenine(2503)-C(2))-methyltransferase; AltName:
Full=23S rRNA m2A2503 methyltransferase; AltName:
Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=tRNA (adenine(37)-C(2))-methyltransferase;
AltName: Full=tRNA m2A37 methyltransferase
gi|83572671|gb|ABC19223.1| 23S rRNA m(2)A-2503 methyltransferase [Moorella thermoacetica ATCC
39073]
Length = 354
Score = 206 bits (524), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 116/296 (39%), Positives = 170/296 (57%), Gaps = 22/296 (7%)
Query: 63 PLTSTLHSVVDSSDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCIS 122
P L+ +V ++D +T KLL+ L +G +E V+M Y + G R+T C+S
Sbjct: 65 PPVRVLNRLV-AADGLTRKLLLGLGDGNSIECVLMIY-----------KDGRRRNTACLS 112
Query: 123 SQVGCKMGCNFCATGTMGFKSNLSSGEIVEQ-------LVHASRLSNIRNVVFMGMGEPL 175
SQVGC MGC+FCATG G + NL++ EI+ Q L + I N+VFMGMGEPL
Sbjct: 113 SQVGCAMGCSFCATGQGGLQRNLTASEIILQALALGAELAEGEGGNRISNIVFMGMGEPL 172
Query: 176 NNYAALVEAVRIMTGLP-FQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDV 234
NNY A+++ VRI + +S +RIT+ST GIV I + + P L LAVSLHA ++
Sbjct: 173 NNYEAVMKGVRIFEDPSGWGISHRRITLSTCGIVPGIERLAREKPPLELAVSLHAVTNEL 232
Query: 235 RCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQV 294
R ++MP R +PLE+L+ A + Y + + +++ EY ++ GVND + A L +LL
Sbjct: 233 RDKLMPINRRYPLEELIPACRRYAEITGRRVTFEYALIAGVNDRREDARGLSRLLRDMLA 292
Query: 295 VVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 350
VN+IP NP+ S F+ +F +L+ + +R GQDI+ ACGQL
Sbjct: 293 FVNIIPLNPVAG-SGFKGVPPAAARAFVALLQ-EAGLEAAIRDSRGQDIAAACGQL 346
>gi|392946634|ref|ZP_10312276.1| 23S rRNA m2A2503 methyltransferase [Frankia sp. QA3]
gi|392289928|gb|EIV95952.1| 23S rRNA m2A2503 methyltransferase [Frankia sp. QA3]
Length = 416
Score = 206 bits (524), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 115/291 (39%), Positives = 166/291 (57%), Gaps = 29/291 (9%)
Query: 76 DDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCA 135
D +T K + +G +E+VIMRY R+T+C+SSQ GC MGC FCA
Sbjct: 110 DGLTRKTAWRTADGALLESVIMRYPD--------------RATVCVSSQAGCGMGCPFCA 155
Query: 136 TGTMGFKSNLSSGEIVEQLVHASRL----------SNIRNVVFMGMGEPLNNYAALVEAV 185
TG G NLS+ EIVEQ+VHA+R+ + NVVFMGMGEPL NY+A+ A+
Sbjct: 156 TGQGGLTRNLSTAEIVEQVVHAARVLRRRELAGGEGRLSNVVFMGMGEPLANYSAVTAAL 215
Query: 186 RIMTGLP---FQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAA 242
R + P +S + +TVSTVG+V A+ + + + LAVSLHAP ++R +++P
Sbjct: 216 RRLIAPPPEGLGLSARGLTVSTVGLVPAMRRLAGEGLPVTLAVSLHAPDDELRDELVPIN 275
Query: 243 RAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFN 302
+P+ +++ A EY + + +++ IEY ++DGVND+ A L LL VNLIP N
Sbjct: 276 TRWPVAEVLAAAWEYAEVTGRRVSIEYALIDGVNDDVARADALATLLAGRLAHVNLIPLN 335
Query: 303 PIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVN 353
P S ++ S+ +F + LR I TTVR G++I+ ACGQL
Sbjct: 336 PTDG-SSWQASAPAGQRAFVRRLR-ERGIATTVRDTRGREIAAACGQLAAE 384
>gi|289551002|ref|YP_003471906.1| ribosomal RNA large subunit methyltransferase N [Staphylococcus
lugdunensis HKU09-01]
gi|289180534|gb|ADC87779.1| Ribosomal RNA large subunit methyltransferase N [Staphylococcus
lugdunensis HKU09-01]
Length = 364
Score = 206 bits (524), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 116/327 (35%), Positives = 184/327 (56%), Gaps = 25/327 (7%)
Query: 31 IWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHSVV-DSSDDVTTKLLVKLQNG 89
I++++ + ++E +L LL F + +TL +VV S D T K L +LQ+G
Sbjct: 46 IYEWLYQKRVNSFEEMTNLSKDLRKLLADHF--VMTTLTTVVKQESKDGTIKFLFELQDG 103
Query: 90 GFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGE 149
+E V+MR+D +++C+++QVGC++GC FCA+ G K NL +GE
Sbjct: 104 YTIETVLMRHDYG--------------NSVCVTTQVGCRIGCTFCASTLGGLKRNLEAGE 149
Query: 150 IVEQLVHASRL-----SNIRNVVFMGMGEPLNNYAALVEAVRIMTGL-PFQVSPKRITVS 203
IV Q++ + + +V MG+GEP NY +++ +RI+ + + ITVS
Sbjct: 150 IVSQVLTVQKALDATEERVSQIVIMGIGEPFENYDEMMDFLRIVNDDNSLNIGARHITVS 209
Query: 204 TVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQ 263
T GIV I F + +N AVSLHA DVR ++MP RA+ ++KLM A++ YQ+ + +
Sbjct: 210 TSGIVPRIYDFADEGIQINFAVSLHAAKDDVRSKLMPINRAYNVDKLMEAIRYYQQKTNR 269
Query: 264 KIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQK 323
+I EY + GVND+ +HA +L L++ VNLIP N + + +TS DD + F+K
Sbjct: 270 RITFEYGLFGGVNDQLEHARELAHLIKNLNCHVNLIPVNHVPERNYVKTSKDD-IFKFEK 328
Query: 324 ILRGSYNIRTTVRKQMGQDISGACGQL 350
L+ + T+R++ G DI ACGQL
Sbjct: 329 ELK-RLGVNATIRREQGSDIDAACGQL 354
>gi|332799418|ref|YP_004460917.1| ribosomal RNA large subunit methyltransferase N [Tepidanaerobacter
acetatoxydans Re1]
gi|332697153|gb|AEE91610.1| Ribosomal RNA large subunit methyltransferase N [Tepidanaerobacter
acetatoxydans Re1]
Length = 343
Score = 206 bits (524), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 115/286 (40%), Positives = 171/286 (59%), Gaps = 19/286 (6%)
Query: 68 LHSVVDSSDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGC 127
++ +S D TTK + L++G VE+V M+Y S G +T CISSQVGC
Sbjct: 67 IYKKYESEIDETTKYVFALEDGQMVESVKMKY--SFG------------TTACISSQVGC 112
Query: 128 KMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSNIR--NVVFMGMGEPLNNYAALVEAV 185
MGC FCA+ G NL+ E+ ++++ + SN++ VV MG GEPL NY L++ +
Sbjct: 113 SMGCAFCASTEGGMVRNLAWWEMADEVIAIEKDSNVKISRVVVMGSGEPLLNYDELIQFL 172
Query: 186 RIMTG-LPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARA 244
RI+ L F +S +R+TVST GIV I + + + LAVSLHAP D+R +MP
Sbjct: 173 RILNSPLAFNISYRRLTVSTCGIVPKIIRLAEEGLPITLAVSLHAPNDDIRSSLMPINER 232
Query: 245 FPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPI 304
+P+ +L++A K Y ++++I EYI++ +ND EQ A +L LL+ VNLIP NP+
Sbjct: 233 YPILQLLDACKYYIMKTKRRITFEYILISDINDTEQCACELSNLLKDLLCHVNLIPLNPV 292
Query: 305 GSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 350
+F+ S D ++ F++IL + I TVR++MG DI+ ACGQL
Sbjct: 293 EG-KKFKKSDDSRIRKFEQILLNN-GISATVRREMGSDINAACGQL 336
>gi|187734933|ref|YP_001877045.1| radical SAM enzyme, Cfr family [Akkermansia muciniphila ATCC
BAA-835]
gi|205829710|sp|B2UNF2.1|RLMN_AKKM8 RecName: Full=Probable dual-specificity RNA methyltransferase RlmN;
AltName: Full=23S rRNA
(adenine(2503)-C(2))-methyltransferase; AltName:
Full=23S rRNA m2A2503 methyltransferase; AltName:
Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=tRNA (adenine(37)-C(2))-methyltransferase;
AltName: Full=tRNA m2A37 methyltransferase
gi|187424985|gb|ACD04264.1| radical SAM enzyme, Cfr family [Akkermansia muciniphila ATCC
BAA-835]
Length = 359
Score = 206 bits (524), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 118/342 (34%), Positives = 193/342 (56%), Gaps = 16/342 (4%)
Query: 25 QHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHSVVDSSDDVTTKLLV 84
Q + +W+ + +D +LP A +LL F+ T + + S D T K L
Sbjct: 30 QQVLDWVWRKRVTT----FDAMSNLPPALKNLLAENFRFHTPEIVEI-HGSADTTRKFLT 84
Query: 85 KLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSN 144
K+++G VE+VI+ + NG+ R TLC+SSQVGC GC FCA+G +G K +
Sbjct: 85 KMEDGSLVESVII---PAAAAENGEK---SERVTLCVSSQVGCAFGCKFCASGLLGLKRH 138
Query: 145 LSSGEIVEQLVHASRLSNIR--NVVFMGMGEPLNNYAALVEAVRIMTG-LPFQVSPKRIT 201
L++GEI+ Q++ A ++ R N+VFMGMGEPL+N+ L +A+ I+T ++ + IT
Sbjct: 139 LTTGEIIGQILSAEAIAGKRVNNIVFMGMGEPLSNFDNLADALEIITSHRGLEIGARHIT 198
Query: 202 VSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNS 261
+ST G V + K + + LAVSLH +VR QIMP + +PL +L+ AL+E+ +
Sbjct: 199 ISTSGFVPGLKKLAAYPRQIRLAVSLHGATDEVRDQIMPVNKKWPLSQLIPALEEWNRGR 258
Query: 262 QQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSF 321
Q +EYI++ +ND + A L ++ + VNLIP+N + + ++ S+++ SF
Sbjct: 259 NQMPTLEYILIRDINDSPKDASHLVRIAKRLHAKVNLIPYNTVEGLP-WKRPSEERCRSF 317
Query: 322 QKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDKISAKST 363
+ + + I T+R + G DI+ ACGQL + + S K++
Sbjct: 318 RDAVHKA-RIPVTMRYEKGHDINAACGQLRLRKEQEKSGKTS 358
>gi|257867066|ref|ZP_05646719.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
casseliflavus EC30]
gi|257873401|ref|ZP_05653054.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
casseliflavus EC10]
gi|257877144|ref|ZP_05656797.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
casseliflavus EC20]
gi|257801122|gb|EEV30052.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
casseliflavus EC30]
gi|257807565|gb|EEV36387.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
casseliflavus EC10]
gi|257811310|gb|EEV40130.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
casseliflavus EC20]
Length = 361
Score = 206 bits (524), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 120/334 (35%), Positives = 185/334 (55%), Gaps = 34/334 (10%)
Query: 31 IWKYVIENPNCEWDEFPSLPSAAYSLLRSKF--KPLTSTLHSVVDSSDDVTTKLLVKLQN 88
+W+++ E ++E +LP L + F PL VV + D T K L +L +
Sbjct: 36 VWEWLYEKRVTSFEEMTNLPKPLIEKLSAAFVINPLKQM---VVQEASDGTVKYLFQLPD 92
Query: 89 GGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSG 148
+E V+MR + + ++C+++QVGC +GC FCA+G + + +L++G
Sbjct: 93 NHMIETVLMRQEYGM--------------SVCVTTQVGCNIGCTFCASGLLKKQRDLTAG 138
Query: 149 EIVEQLVHASRLSNIRN-------VVFMGMGEPLNNYAALVEAVRIMT---GLPFQVSPK 198
EIV Q++ + RN VV MG+GEP +NY ++ ++I+ GL + +
Sbjct: 139 EIVAQIMLVQHYFDERNEGERVSHVVVMGIGEPFDNYDNVMHFLQIINDPKGLA--IGAR 196
Query: 199 RITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQ 258
ITVST G+ H I +F + +NLA+SLHAP +VR +M R+FP+EKLM A+ Y
Sbjct: 197 HITVSTSGLAHKIREFAENGLQVNLAISLHAPNNEVRTSMMRINRSFPIEKLMAAVDYYL 256
Query: 259 KNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVV--VNLIPFNPIGSVSQFRTSSDD 316
+ + ++I EYIMLD VND +HA QL LL+ + + VNLIP+NP+ Q+ S
Sbjct: 257 EKTNRRITFEYIMLDHVNDRPEHARQLAALLKDKKKLSYVNLIPYNPVSEHDQYARSKKA 316
Query: 317 KVSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 350
V +F IL+ + I +RK+ G DI ACGQL
Sbjct: 317 DVLAFYDILKKN-GINCVIRKEHGTDIDAACGQL 349
>gi|56419709|ref|YP_147027.1| ribosomal RNA large subunit methyltransferase N [Geobacillus
kaustophilus HTA426]
gi|375008142|ref|YP_004981775.1| ribosomal RNA large subunit methyltransferase N [Geobacillus
thermoleovorans CCB_US3_UF5]
gi|448237331|ref|YP_007401389.1| ribosomal RNA large subunit methyltransferase N [Geobacillus sp.
GHH01]
gi|81347651|sp|Q5L0S1.1|RLMN_GEOKA RecName: Full=Probable dual-specificity RNA methyltransferase RlmN;
AltName: Full=23S rRNA
(adenine(2503)-C(2))-methyltransferase; AltName:
Full=23S rRNA m2A2503 methyltransferase; AltName:
Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=tRNA (adenine(37)-C(2))-methyltransferase;
AltName: Full=tRNA m2A37 methyltransferase
gi|56379551|dbj|BAD75459.1| hypothetical conserved protein [Geobacillus kaustophilus HTA426]
gi|359286991|gb|AEV18675.1| Ribosomal RNA large subunit methyltransferase N [Geobacillus
thermoleovorans CCB_US3_UF5]
gi|445206173|gb|AGE21638.1| ribosomal RNA large subunit methyltransferase N [Geobacillus sp.
GHH01]
Length = 365
Score = 206 bits (524), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 114/329 (34%), Positives = 193/329 (58%), Gaps = 29/329 (8%)
Query: 31 IWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHSVV-DSSDDVTTKLLVKLQNG 89
I++++ +N ++ + +LP L S F +TL +VV +S D T K L +L +G
Sbjct: 47 IYEWLYQNRVTDFADMTNLPKRLREQLASSFS--ITTLKTVVKQTSKDGTIKFLFELHDG 104
Query: 90 GFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGE 149
+E V+MR++ +++C+++QVGC++GC FCA+ G K +L +GE
Sbjct: 105 YSIETVLMRHNYG--------------NSVCVTTQVGCRIGCTFCASTLGGLKRHLEAGE 150
Query: 150 IVEQLVHASRL-----SNIRNVVFMGMGEPLNNYAALVEAVRIMT---GLPFQVSPKRIT 201
IV Q+V + + ++V MG+GEP +NY AL++ +RI+ GL + + IT
Sbjct: 151 IVAQVVQVQKALDDTNERVSSIVVMGIGEPFDNYDALIKFLRIVNHPKGL--NIGARHIT 208
Query: 202 VSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNS 261
VST GI+ I +F + +N A+SLHAP ++R ++MP +A+PL KLM A++ Y + +
Sbjct: 209 VSTSGIIPKIYQFADEGMQINFAISLHAPTNELRTKLMPINKAYPLPKLMEAVRYYIEKT 268
Query: 262 QQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSF 321
+++ EY + GVND+ +HA QL +L++ + VNLIP N + + RT ++ +F
Sbjct: 269 GRRVTFEYGLFGGVNDQLEHAEQLAELIKGLKCHVNLIPVNYVPERNYVRTPR-SQIFAF 327
Query: 322 QKILRGSYNIRTTVRKQMGQDISGACGQL 350
++ L+ + I T+R++ G DI ACGQL
Sbjct: 328 ERALK-KHGINVTIRREHGHDIDAACGQL 355
>gi|224373787|ref|YP_002608159.1| ribosomal RNA large subunit methyltransferase N [Nautilia
profundicola AmH]
gi|259491991|sp|B9L721.1|RLMN_NAUPA RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|223590036|gb|ACM93772.1| radical SAM enzyme, Cfr family [Nautilia profundicola AmH]
Length = 354
Score = 206 bits (523), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 125/343 (36%), Positives = 196/343 (57%), Gaps = 17/343 (4%)
Query: 17 EFEKAGIKQHF-IPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKF--KPLTSTLHSVVD 73
E + GI+ F ++++V +++E ++P + L+ +F PL H +
Sbjct: 13 ELMEFGIQPKFRTKQLYQWVYRKYVDDFEEMKNIPKDLKAKLKKEFIINPLELINHEI-- 70
Query: 74 SSDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNF 133
+ D T K L K+ + VE V+++ K +GK + + T+C+S+QVGCK+GC F
Sbjct: 71 -ATDGTEKFLFKMHDNHTVETVLIKMKDEEIK-DGKIKEA--KYTVCVSTQVGCKVGCAF 126
Query: 134 CATGTMGFKSNLSSGEIVEQLVHASRLSNIR-----NVVFMGMGEPLNNYAALVEAVRIM 188
C T GF NLS+GEIV Q+ + N NVV+MGMGEPL+NY ALV+A++I+
Sbjct: 127 CLTAKGGFVRNLSAGEIVAQVWWMKKFKNFDENKALNVVYMGMGEPLDNYDALVKAIKIL 186
Query: 189 TGLP-FQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPL 247
+SP+R TVST GI I + ++ G+NLA+SLHA ++R Q++P +A+ +
Sbjct: 187 ANPDGMNISPRRQTVSTSGIAPKIKRLGNENLGVNLAISLHAVDDELREQLIPLNKAYNI 246
Query: 248 EKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSV 307
E +++A++E+ + ++K+ EY+++ VND+ + A +L KLL VNLI FNP
Sbjct: 247 ESVIDAIREFPIDKRKKVMFEYLVIKDVNDDIESAKKLVKLLNGIPSKVNLIYFNPYPG- 305
Query: 308 SQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 350
+ F+ D + FQ L I T+RK G DIS ACGQL
Sbjct: 306 TNFKRPDDATMKKFQDYLINK-GIMCTIRKSKGMDISAACGQL 347
>gi|328866638|gb|EGG15021.1| putative ribosomal RNA large subunit methyltransferase N
[Dictyostelium fasciculatum]
Length = 432
Score = 206 bits (523), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 134/355 (37%), Positives = 194/355 (54%), Gaps = 40/355 (11%)
Query: 14 IRAEFEKAGIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHSVVD 73
I +FE G++++ +WK++ D +L +L + + H VV+
Sbjct: 68 IETQFETLGLEKYRAKQVWKWIYNKGTKNIDHIDNLSKKHRDILSEVY----NIDHGVVN 123
Query: 74 S---SDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMG 130
S D T KLLV+ + G VE V + P R TLCISSQVGC
Sbjct: 124 KDSLSIDGTRKLLVEFK-GDEVETVFI--------------PERNRGTLCISSQVGCTFQ 168
Query: 131 CNFCATGTMGFKSNLSSGEIVEQLVHASRL-------SNIR---NVVFMGMGEPLNNYAA 180
C FC TGT NL++GEIV Q+ A L +N R NVV MG GEPL NY
Sbjct: 169 CTFCHTGTQKLVRNLTAGEIVSQVFTARSLMHDFGPTTNKRLLTNVVLMGQGEPLYNYRN 228
Query: 181 LVEAVRIMT-GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIM 239
+ +A++I+T G +S +IT+ST G+V I + D PG+ LA+SLHA R +I+
Sbjct: 229 VSKALKILTDGEGISISKSKITLSTSGVVPLIERLGQDFPGIGLAISLHASNNKTRSEIV 288
Query: 240 PAARAFPLEKLMNALKEY-QKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNL 298
P + +P+E+L+ A + QK ++ +I IEY+ML G+ND +Q A+ L +L F ++NL
Sbjct: 289 PINQQWPIEELVQACINFTQKYTKDRITIEYVMLKGINDAKQDAYNLIQLASQFPSLINL 348
Query: 299 IPFNPI-GSVSQFRTSSDDKVSSFQKIL-RGSYNIRTTVRKQMGQDISGACGQLV 351
IPFNP G++ + + D++ SF +IL RG ++ TVR+ G DI ACGQLV
Sbjct: 349 IPFNPWPGTI--YECTPIDQIESFARILERGG--LKVTVRQPRGTDILAACGQLV 399
>gi|260494797|ref|ZP_05814927.1| ribosomal RNA large subunit methyltransferase N [Fusobacterium sp.
3_1_33]
gi|260197959|gb|EEW95476.1| ribosomal RNA large subunit methyltransferase N [Fusobacterium sp.
3_1_33]
Length = 358
Score = 206 bits (523), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 122/336 (36%), Positives = 185/336 (55%), Gaps = 17/336 (5%)
Query: 22 GIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSK-FKPLTSTLHSVVDSSDDVTT 80
G+K+ + ++ ++ + +DE +L +L+ K + P + L + S D T
Sbjct: 24 GLKKFYGKEVFIWLHKKITRSFDEMTNLSLKDREILKEKTYIPFFNLLKHQI-SKIDRTE 82
Query: 81 KLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMG 140
K L +L++ G +E V++R+ S K R+TLCISSQVGC + C+FCATG G
Sbjct: 83 KFLFELEDKGTIETVLLRHKDSKNK--------EIRNTLCISSQVGCPVKCSFCATGQSG 134
Query: 141 FKSNLSSGEIVEQLVHASRL-----SNIRNVVFMGMGEPLNNYAALVEAVRIMTGLP-FQ 194
+ NLS EI+ Q+ R + N+VFMGMGEPL N L +A+ I++
Sbjct: 135 YMRNLSVSEILNQVYTVERRLRKKGETLNNLVFMGMGEPLLNIDNLSKALSIISNENGIN 194
Query: 195 VSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNAL 254
+S ++IT+ST G+V I K D + LA+SLH+ + + R +I+P + FPLE L L
Sbjct: 195 ISKRKITISTSGVVSGIEKILLDKIPIELAISLHSAINEKRDKIIPLNKNFPLEDLSAVL 254
Query: 255 KEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSS 314
EYQK ++++I EYI++D N E A+ L + F VVNLIP+N + V R S
Sbjct: 255 IEYQKQTKRRITFEYILIDNFNISETDANALADFVHQFDHVVNLIPYNEVEGVEHTRPSV 314
Query: 315 DDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 350
K+ F L+ + T+R++ G DI GACGQL
Sbjct: 315 -KKIDKFYNYLKNVRRVNVTLRQEKGSDIDGACGQL 349
>gi|430840529|ref|ZP_19458453.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E1007]
gi|430495016|gb|ELA71232.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E1007]
Length = 355
Score = 206 bits (523), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 122/356 (34%), Positives = 190/356 (53%), Gaps = 30/356 (8%)
Query: 18 FEKAGIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKF--KPLTSTLHSVVDSS 75
F + G K+ +W+++ + + E +L L + F PL VV +
Sbjct: 18 FIENGEKKFRAAQVWEWLYQKRVSNFTEMTNLSKQLIEKLSAHFIINPLKQM---VVQEA 74
Query: 76 DDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCA 135
D T K L +L + +E V+MR + L ++C+++QVGC +GC FCA
Sbjct: 75 SDGTVKYLFELPDKNMIETVLMRQEYGL--------------SVCVTTQVGCNIGCTFCA 120
Query: 136 TGTMGFKSNLSSGEIVEQLVHASRLSNIRN-------VVFMGMGEPLNNYAALVEAVRIM 188
+G + +L++GEIV Q++ + RN VV MG+GEP +NY +++ + I+
Sbjct: 121 SGLLKKNRDLTAGEIVAQIMMVQHYFDERNLGERVSHVVVMGIGEPFDNYDNVMDFLHII 180
Query: 189 TGLP-FQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPL 247
+ + ITVST G+ H I +F ++ +NLA+SLHAP +VR IM R+FP+
Sbjct: 181 NDAKGLAIGARHITVSTSGLAHKIKEFANNGLQVNLAISLHAPNNEVRTSIMRINRSFPI 240
Query: 248 EKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQ--VVVNLIPFNPIG 305
EKLM A+ EY + + ++I EYIML+ VND +HA QL LL+ + VNLIP+NP+
Sbjct: 241 EKLMEAVDEYLEKTNRRITFEYIMLNQVNDRPEHAQQLADLLKDKKKLAYVNLIPYNPVS 300
Query: 306 SVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDKISAK 361
Q+ S V F +L+ + + +RK+ G DI+ ACGQL K +AK
Sbjct: 301 EHDQYSRSPKADVLRFYDVLKKN-GVNCVIRKEHGTDINAACGQLRSKQMKKTAAK 355
>gi|395225716|ref|ZP_10404232.1| 23S rRNA m2A2503 methyltransferase [Thiovulum sp. ES]
gi|394446116|gb|EJF06961.1| 23S rRNA m2A2503 methyltransferase [Thiovulum sp. ES]
Length = 355
Score = 206 bits (523), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 125/349 (35%), Positives = 200/349 (57%), Gaps = 18/349 (5%)
Query: 12 GIIRAEFEKAGIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHSV 71
G+ E +K K+ I+ ++ N +DE ++ A L KF T +
Sbjct: 6 GLSLGEVQKLVPKKFVAKQIYNWIYHNYKSSFDEMGNISKALRKELSEKFSIHTMEIAKK 65
Query: 72 VDSSDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGC 131
+S D T K L +L++G VE V+++ + +G R T+C+S+QVGCK+GC
Sbjct: 66 EESLDG-TIKYLFRLEDGRTVETVLIKMRDEVFNEDGDILQQA-RYTICVSTQVGCKVGC 123
Query: 132 NFCATGTMGFKSNLSSGEIVEQLVHASRLSNIR-----NVVFMGMGEPLNNYAALVEAVR 186
+FC+T GF +LS+ EIVEQ++ R I NVV+MGMGEPL+N+ +LV A+
Sbjct: 124 SFCSTAKGGFVRDLSTAEIVEQVLAIKREQEIEYSRKGNVVYMGMGEPLDNFTSLVNAIA 183
Query: 187 IM---TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAAR 243
I+ GL +SP+R TVST GI I+K S G+++A+SLHA +VR +++P +
Sbjct: 184 ILKDENGLS--ISPRRQTVSTSGISTKIDKLGSLDLGVHIAISLHAVDDEVRTELIPMNK 241
Query: 244 AFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNP 303
AF ++ +++A+K + ++++++ EY+M+ GVND + A +L KLLE + +NLI FNP
Sbjct: 242 AFNIQSIISAVKRFPYDNRKRVMFEYLMIRGVNDSLESAKKLIKLLEGIKAKINLIYFNP 301
Query: 304 IGSVSQFRTSSDDKVSSFQKIL--RGSYNIRTTVRKQMGQDISGACGQL 350
S++ +++ + F L RG + T+R G +IS ACGQL
Sbjct: 302 HDG-SEYERPTEENMEKFADYLNRRG---LLATIRASRGVEISAACGQL 346
>gi|172058977|ref|YP_001815437.1| ribosomal RNA large subunit methyltransferase N [Exiguobacterium
sibiricum 255-15]
gi|205829757|sp|B1YG36.1|RLMN_EXIS2 RecName: Full=Probable dual-specificity RNA methyltransferase RlmN;
AltName: Full=23S rRNA
(adenine(2503)-C(2))-methyltransferase; AltName:
Full=23S rRNA m2A2503 methyltransferase; AltName:
Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=tRNA (adenine(37)-C(2))-methyltransferase;
AltName: Full=tRNA m2A37 methyltransferase
gi|171991498|gb|ACB62420.1| radical SAM enzyme, Cfr family [Exiguobacterium sibiricum 255-15]
Length = 357
Score = 206 bits (523), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 120/332 (36%), Positives = 184/332 (55%), Gaps = 30/332 (9%)
Query: 31 IWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHSVVDSSDDVTTKLLVKLQNGG 90
+W ++ + E ++ LL F + S +V S D T K L KL +G
Sbjct: 31 VWDWLYRKRVTTFAEMTNVNKDCLELLDQSF-AIDSMTQAVKQESADGTIKFLFKLYDGS 89
Query: 91 FVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEI 150
+E V+MR+ L ++C+++QVGC +GC+FCA+G + +LS+GEI
Sbjct: 90 LIETVLMRHKYGL--------------SVCVTTQVGCNIGCSFCASGLIKKSRDLSAGEI 135
Query: 151 VEQLVHAS-------RLSNIRNVVFMGMGEPLNNYAALVEAVRIM---TGLPFQVSPKRI 200
VEQ+++ + + +VV MG+GEP +N+ +V+ + ++ GL + + I
Sbjct: 136 VEQIMNVQHHLDAVGKEERVSHVVVMGIGEPFDNFDNMVDFLNVIKDHNGLA--IGARHI 193
Query: 201 TVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKN 260
TVST G+ I KF +NLA+SLHAP ++R QIM RA PLEKLM A+ Y K
Sbjct: 194 TVSTSGLADKIYKFADLKLQVNLAISLHAPNNELRTQIMKINRAIPLEKLMPAIDYYVKT 253
Query: 261 SQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQ--VVVNLIPFNPIGSVSQFRTSSDDKV 318
+ +KI IEYI+L GVND++ A +L KL E + VNLIP+NP+ Q++ S+ + +
Sbjct: 254 TNRKITIEYILLRGVNDQKAQAIELAKLFEDKRHLTYVNLIPYNPVDEHGQYQRSTSEDI 313
Query: 319 SSFQKILRGSYNIRTTVRKQMGQDISGACGQL 350
S+F L+ + + VR + G DI ACGQL
Sbjct: 314 STFYDTLKKN-GLNCGVRLEHGTDIDAACGQL 344
>gi|422941346|ref|ZP_16967816.1| cfr family radical SAM enzyme, partial [Fusobacterium nucleatum
subsp. animalis ATCC 51191]
gi|339889541|gb|EGQ78830.1| cfr family radical SAM enzyme [Fusobacterium nucleatum subsp.
animalis ATCC 51191]
Length = 349
Score = 206 bits (523), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 122/336 (36%), Positives = 185/336 (55%), Gaps = 17/336 (5%)
Query: 22 GIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSK-FKPLTSTLHSVVDSSDDVTT 80
G+K+ + ++ ++ + +DE +L +L+ K + P + L V S D T
Sbjct: 24 GLKKFYGKEVFIWLHKKITRSFDEMTNLSLKDREILKEKTYIPFFNLLKYQV-SKIDRTE 82
Query: 81 KLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMG 140
K L +L++ G +E V++R+ S K R+TLC+SSQVGC + C+FCATG G
Sbjct: 83 KFLFELEDKGTIETVLLRHKDSKNK--------EIRNTLCVSSQVGCPVKCSFCATGQSG 134
Query: 141 FKSNLSSGEIVEQLVHASRL-----SNIRNVVFMGMGEPLNNYAALVEAVRIMTGLP-FQ 194
+ NLS EI+ Q+ R + N+VFMGMGEPL N L +A+ I++
Sbjct: 135 YMRNLSVSEILNQVYTVERRLRKKGETLNNLVFMGMGEPLLNIDNLSKALSIISNKNGIN 194
Query: 195 VSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNAL 254
+S ++IT+ST G+V I K D + LA+SLH+ + + R +I+P + FPLE L L
Sbjct: 195 ISKRKITISTSGVVSGIEKILLDKIPIELAISLHSAINEKRDKIIPLNKNFPLEDLSAVL 254
Query: 255 KEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSS 314
EYQK ++++I EYI++D N E A+ L + F VVNLIP+N + V R S
Sbjct: 255 IEYQKQTKRRITFEYILIDNFNISETDANALADFVHQFDHVVNLIPYNEVEGVEHTRPSV 314
Query: 315 DDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 350
K+ F L+ + T+R++ G DI GACGQL
Sbjct: 315 -KKIDKFYNYLKNVRKVNVTLRQEKGSDIDGACGQL 349
>gi|358450412|ref|ZP_09160875.1| radical SAM protein [Marinobacter manganoxydans MnI7-9]
gi|385331231|ref|YP_005885182.1| hypothetical protein HP15_1490 [Marinobacter adhaerens HP15]
gi|311694381|gb|ADP97254.1| conserved hypothetical protein [Marinobacter adhaerens HP15]
gi|357225343|gb|EHJ03845.1| radical SAM protein [Marinobacter manganoxydans MnI7-9]
Length = 370
Score = 206 bits (523), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 123/359 (34%), Positives = 200/359 (55%), Gaps = 36/359 (10%)
Query: 14 IRAEFEKAGIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHSVV- 72
+ A FE G K+ + +++ + ++D+ ++ A LR K K + V
Sbjct: 18 LEAFFESLGEKRFRATQVLQWIHQRGADDFDQMTNMSKA----LREKLKQVAEIRGPEVV 73
Query: 73 --DSSDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMG 130
++S D T K ++++ NG VE V++ P G R TLC+SSQ+GC +
Sbjct: 74 YDETSKDGTRKWVMRMDNGNSVETVLI--------------PDGERGTLCVSSQIGCSLD 119
Query: 131 CNFCATGTMGFKSNLSSGEIVEQLVHASRL---------SNIRNVVFMGMGEPLNNYAAL 181
C FC+TG GF NL++ E++ Q+ A + I NVV MGMGEPL N+ +
Sbjct: 120 CTFCSTGKRGFNRNLTAAEVIGQVWVARKAFMPFEPGPDRPITNVVMMGMGEPLLNFDNV 179
Query: 182 VEAVRI-MTGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMP 240
V+A+ + M L + +S +R+T+ST G+V A+++ S++ ++LA+SLHAP ++R +++P
Sbjct: 180 VDAMNLMMEDLAYGISKRRVTLSTSGVVPALDRL-SEVTDVSLAISLHAPNDELRNKLVP 238
Query: 241 AARAFPLEKLMNALKEY--QKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNL 298
+ +P+ +L+ A K Y + ++K IEY +++G+ND+ +HA +L LL +NL
Sbjct: 239 LNKKYPISELLAATKRYFARLPDKRKATIEYTVIEGMNDQPEHARELAVLLRDLPCKINL 298
Query: 299 IPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDK 357
IPFNP S FR S + FQ +L + I TT+R G DI ACGQLV + D+
Sbjct: 299 IPFNPFPE-SDFRRPSMNATRRFQNVLNEAGYI-TTIRTTRGDDIDAACGQLVGRVEDR 355
>gi|392424493|ref|YP_006465487.1| 23S rRNA m(2)A-2503 methyltransferase [Desulfosporosinus
acidiphilus SJ4]
gi|391354456|gb|AFM40155.1| 23S rRNA m(2)A-2503 methyltransferase [Desulfosporosinus
acidiphilus SJ4]
Length = 357
Score = 206 bits (523), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 122/356 (34%), Positives = 196/356 (55%), Gaps = 28/356 (7%)
Query: 5 YRSVFDGGIIRAEFEKAGIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPL 64
Y FD + A F G K+H +W ++ ++ E + LL F
Sbjct: 7 YGLTFDQ--LAAWFLNHGQKKHRALQVWDWLYRKKATQFSEMTDVHRECIQLLADNFYIK 64
Query: 65 TSTLHSVVDSSDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQ 124
T + + +S D T K L+KLQ+ +E V+MR+ L ++C+++Q
Sbjct: 65 TLSEYQRQESQDG-TVKFLLKLQDDHLIETVLMRHKFGL--------------SVCVTTQ 109
Query: 125 VGCKMGCNFCATGTMGFKSNLSSGEIVEQLV----HASRL---SNIRNVVFMGMGEPLNN 177
VGC MGC+FCA+G + +LS+GEIVEQ++ H RL + +VV MG+GEP +N
Sbjct: 110 VGCNMGCSFCASGLLTKNRDLSAGEIVEQVIVVQDHLKRLGQPEQVSHVVVMGIGEPFDN 169
Query: 178 YAALVEAVRIMTGLPFQVSPKR-ITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRC 236
+ +++ A+ I+ P R ITVST G+ I +F +NLA+SLHAP ++R
Sbjct: 170 FTSVINAIEIIKDHKGLAIPARHITVSTSGLADKIYQFADANLQVNLAISLHAPNNELRT 229
Query: 237 QIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLL-ETFQVV 295
QIM R F ++ +M A+ Y + +++++ +EYI+L +ND++ HA Q+ +L+ E Q++
Sbjct: 230 QIMKINRIFSIQSIMEAVDYYLQKTKRRVTLEYILLKDLNDQQIHARQIAELIGEKRQLI 289
Query: 296 -VNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 350
VNLIP+NP+ SQ++ S + F IL+ + I ++R + G DI ACGQL
Sbjct: 290 NVNLIPYNPVDEHSQYQRSDHKSMLVFYDILK-KHRINCSIRLEHGGDIDAACGQL 344
>gi|398807426|ref|ZP_10566304.1| 23S rRNA methyltransferase [Variovorax sp. CF313]
gi|398089436|gb|EJL79952.1| 23S rRNA methyltransferase [Variovorax sp. CF313]
Length = 382
Score = 206 bits (523), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 136/366 (37%), Positives = 193/366 (52%), Gaps = 33/366 (9%)
Query: 9 FDGGIIRAEFEKAGIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTL 68
FD + A EK G K+ +++++ + ++ + L + L + + L
Sbjct: 9 FDLEGLAAFCEKLGEKKFRATQLFRWIHQRGASDFAQMTDLAKSLREKLATTAR--VEAL 66
Query: 69 HSVVD-SSDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGC 127
+ S D T K L + +G VEAV + P R TLC+SSQ GC
Sbjct: 67 QVITQHESKDGTIKWLFDVGDGNAVEAVFI--------------PEDDRGTLCVSSQAGC 112
Query: 128 KMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN---------IRNVVFMGMGEPLNNY 178
+GC FC+TG GF NLS+GEIV QL A I NVV MGMGEPL NY
Sbjct: 113 AVGCRFCSTGHQGFSRNLSTGEIVAQLWFAEHFLRKHLKRDERVISNVVMMGMGEPLQNY 172
Query: 179 AALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQ 237
+ALV A+R M + +S +R+TVST G+V I++ +D P + +AVSLHAP +R
Sbjct: 173 SALVPALRTMLDDNAYGLSRRRVTVSTSGVVPMIDRLGADCP-VAMAVSLHAPNDALRDD 231
Query: 238 IMPAARAFPLEKLMNALKEYQKNSQQK-IFIEYIMLDGVNDEEQHAHQLGKLLETFQVVV 296
++P R +P+ +L+ A K Y ++ + I EY MLDGVND+ +HA QL +L+ T +
Sbjct: 232 LVPLNRKYPIAELIEACKRYLAHAPRDFITFEYCMLDGVNDQPEHARQLIELVRTHGISC 291
Query: 297 --NLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNL 354
NLIPFNP + R S +V +F + L + TTVRK G DI ACGQL ++
Sbjct: 292 KFNLIPFNPFPASGLLR-SPQPRVLAFARTL-SEAGLVTTVRKTRGDDIDAACGQLAGDV 349
Query: 355 PDKISA 360
D+ A
Sbjct: 350 KDRTRA 355
>gi|54294410|ref|YP_126825.1| hypothetical protein lpl1479 [Legionella pneumophila str. Lens]
gi|81368632|sp|Q5WWH4.1|RLMN_LEGPL RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|53754242|emb|CAH15719.1| hypothetical protein lpl1479 [Legionella pneumophila str. Lens]
Length = 382
Score = 206 bits (523), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 121/296 (40%), Positives = 174/296 (58%), Gaps = 28/296 (9%)
Query: 75 SDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFC 134
S D T K L+KL+ G +E V + P R TLC+SSQVGC + C+FC
Sbjct: 76 SADGTHKWLLKLECGNCIETVFI--------------PEANRGTLCVSSQVGCALNCSFC 121
Query: 135 ATGTMGFKSNLSSGEIVEQLVHASR-LSN--------IRNVVFMGMGEPLNNYAALVEAV 185
+T GF NLS+ EI+ Q+ A+R LS+ I NVV MGMGEPL N+ +V A+
Sbjct: 122 STAKQGFNRNLSTAEIIGQVWLAARELSDNDGTHDKKITNVVMMGMGEPLLNFDNVVSAM 181
Query: 186 RIMT-GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARA 244
IM L + +S +R+T+ST G++ + + P + LAVSLHAP ++R +++P +
Sbjct: 182 NIMMDDLAYGLSKRRVTLSTSGVIPEMERLREVSP-VALAVSLHAPTDELRNELVPINKK 240
Query: 245 FPLEKLMNALKEYQKNS-QQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNP 303
+PL +L++ K Y K+ ++K+ EY+ML GVND+ +HA QL KLL VNLIPFNP
Sbjct: 241 YPLSQLISLCKRYFKDEPRRKVTFEYVMLKGVNDQPEHASQLIKLLHNVPAKVNLIPFNP 300
Query: 304 IGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDKIS 359
++Q++ SS + + +F+ L + I T RK G DI ACGQL + DK S
Sbjct: 301 F-PLTQYQRSSRETIDAFRDKLM-KHGINTITRKTRGDDIDAACGQLAGEVKDKTS 354
>gi|357410905|ref|YP_004922641.1| radical SAM enzyme, Cfr family [Streptomyces flavogriseus ATCC
33331]
gi|320008274|gb|ADW03124.1| radical SAM enzyme, Cfr family [Streptomyces flavogriseus ATCC
33331]
Length = 368
Score = 206 bits (523), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 132/368 (35%), Positives = 190/368 (51%), Gaps = 41/368 (11%)
Query: 1 MTYDYRSVFDGGIIRAEFEKAGIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSK 60
+T D R F + QH+ +Y +P EW P+ ++ L +
Sbjct: 25 LTPDERKEAVAATGEKPFRAKQLSQHYFT---RYA-HDP-AEWTNIPA--ASRDKLAEAM 77
Query: 61 FKPLTSTLHSVVDSSDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLC 120
F L S L + DD T K L KL +G VE+V+MRY R T+C
Sbjct: 78 FPELMSVLRHI-SCDDDTTRKTLWKLHDGTLVESVLMRYPD--------------RVTMC 122
Query: 121 ISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRL----------SNIRNVVFMG 170
ISSQ GC M C FCATG G NLS+ EIV Q+V R + + N+VFMG
Sbjct: 123 ISSQAGCGMNCPFCATGQAGLDRNLSTAEIVHQIVDGMRALRDGEVPGGPARLSNIVFMG 182
Query: 171 MGEPLNNYAALVEAVRIMT-----GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAV 225
MGEPL NY +V A+R +T GL +S + ITVSTVG+V A+ +F + LAV
Sbjct: 183 MGEPLANYKRVVGAIRRLTDPEPDGL--GLSQRGITVSTVGLVPAMLRFADEGFKCRLAV 240
Query: 226 SLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQL 285
SLHAP ++R ++P + + ++++A EY + S ++I IEY ++ +ND+ +L
Sbjct: 241 SLHAPDDELRDTLVPVNTRWKVREVLDAAWEYAEKSGRRISIEYALIRDINDQAWRGDRL 300
Query: 286 GKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISG 345
G+LL+ +V VNLIP NP + +D+ + + I R + + TVR GQ+I G
Sbjct: 301 GRLLKGKRVHVNLIPLNPTPGSKWTASRPEDEKAFVEAIAR--HGVPVTVRDTRGQEIDG 358
Query: 346 ACGQLVVN 353
ACGQL +
Sbjct: 359 ACGQLAAS 366
>gi|347732286|ref|ZP_08865367.1| 23S rRNA methyltransferase [Desulfovibrio sp. A2]
gi|347518820|gb|EGY25984.1| 23S rRNA methyltransferase [Desulfovibrio sp. A2]
Length = 378
Score = 206 bits (523), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 125/332 (37%), Positives = 188/332 (56%), Gaps = 28/332 (8%)
Query: 31 IWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHSVVDSSDDVTTKLLVKLQNGG 90
+W+++ + +D ++ A + L + + +V SSD T K L+ L +G
Sbjct: 30 VWQWLWQKNARSFDAMTNVSKATRARLAEAARITWPEVRTVKTSSDG-TVKFLLALSDGA 88
Query: 91 FVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEI 150
VE V++ +S R G R T C+S QVGC MGC FC+TG+MGF+ N++ EI
Sbjct: 89 LVETVLIPSES---------REGKVRMTQCLSCQVGCAMGCTFCSTGSMGFERNMTMAEI 139
Query: 151 VEQ-LVHASRLSN-------IRNVVFMGMGEPLNNYAALVEAVRIMT---GLPFQVSPKR 199
+ Q LV L + +RN+VFMGMGEPL N ++ ++R + GL F SP+R
Sbjct: 140 LGQVLVAREHLGDDRPDHPIVRNLVFMGMGEPLLNLNEVMRSLRTLNDEFGLCF--SPRR 197
Query: 200 ITVSTVGIVHAINKFHSDLPGLN-LAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQ 258
ITVST GI + + GL LAVSLHAP Q++R +IMP A + L+ LM AL+ Y
Sbjct: 198 ITVSTCGIEKGLRELGES--GLAFLAVSLHAPNQELRARIMPRAARWTLDDLMAALESYP 255
Query: 259 KNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKV 318
++++I EY++L GVND +HA +L +L+ + +NLI +NP + + S ++
Sbjct: 256 LKTRERITFEYLLLGGVNDSIEHARELVRLVSRTKAKLNLIVYNPAEGLP-YEAPSQARI 314
Query: 319 SSFQKILRGSYNIRTTVRKQMGQDISGACGQL 350
+F++ L S N+ +RK GQDI ACGQL
Sbjct: 315 LAFEQYL-WSKNVTAIIRKSKGQDIKAACGQL 345
>gi|404404818|ref|ZP_10996402.1| ribosomal RNA large subunit methyltransferase N [Alistipes sp.
JC136]
Length = 340
Score = 206 bits (523), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 113/295 (38%), Positives = 167/295 (56%), Gaps = 19/295 (6%)
Query: 57 LRSKFKPLTSTLHSVVDSSDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPR 116
L F P S V +S+D T K L ++ G F+E+ + P G R
Sbjct: 58 LAEAFAPAFSAPERVTESADG-TKKYLFRIPGGHFIESAYI--------------PDGER 102
Query: 117 STLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSNIRNVVFMGMGEPLN 176
+TLC+SSQ GC+MGC FCATG G + +L++ EI+ Q+V + NVVFMGMGEPL+
Sbjct: 103 ATLCVSSQAGCRMGCKFCATGRQGLQRSLTAAEILNQIVSLPERDKLTNVVFMGMGEPLD 162
Query: 177 NYAALVEAVRIMTG-LPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVR 235
N ++ A+ I+T F SP RIT+ST G+V + +F D ++LAVSLH P + R
Sbjct: 163 NTREVLRALEILTAEWGFGWSPTRITLSTAGVVPELRRF-LDATKVHLAVSLHNPFHEER 221
Query: 236 CQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVV 295
+IMP RA+P+ ++ L+EY Q+++ EYI++ G+ND +H +L +LL +
Sbjct: 222 AEIMPVERAWPVAEVAAILREYDFTHQRRVSFEYIVMSGLNDSPRHIRELTRLLNGIKCR 281
Query: 296 VNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 350
+NLI F+ I F + D + F+ L + I+TT+R G+DI ACG L
Sbjct: 282 INLIRFHKIPDSPYF-SPDDAAMIRFRDAL-TARGIQTTIRASRGEDIQAACGLL 334
>gi|89095332|ref|ZP_01168250.1| hypothetical protein MED92_00580 [Neptuniibacter caesariensis]
gi|89080407|gb|EAR59661.1| hypothetical protein MED92_00580 [Oceanospirillum sp. MED92]
Length = 371
Score = 206 bits (523), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 126/359 (35%), Positives = 204/359 (56%), Gaps = 36/359 (10%)
Query: 14 IRAEFEKAGIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHSVV- 72
+ A F++ G K+ + K++ + +DE ++ A LR+K + + V
Sbjct: 18 MEAFFDEIGEKKFRATQVLKWIHQLGATSFDEMTNISKA----LRAKLEEVAEIREPEVL 73
Query: 73 --DSSDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMG 130
+S D T K +++ +G VEAV++ P G R TLC+SSQVGC +
Sbjct: 74 LEKTSKDGTRKWVIRTDSGSSVEAVLI--------------PDGERKTLCVSSQVGCSLD 119
Query: 131 CNFCATGTMGFKSNLSSGEIVEQLVHASRLSN---------IRNVVFMGMGEPLNNYAAL 181
C+FC+TG GF SNL++ EI+ QL A R + NVV MGMGEPL N+ +
Sbjct: 120 CSFCSTGKQGFNSNLTTAEIIGQLRIAIRSYGEYNTTSQRVVSNVVLMGMGEPLMNFDNV 179
Query: 182 VEAVRI-MTGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMP 240
V+A+ + M + +S +R+T+ST G+V AI+K ++ ++LA+SLHAP D+R ++P
Sbjct: 180 VDAITLMMEDNAYCLSKRRVTLSTAGVVPAIDKLR-EVTDVSLAISLHAPNDDLRDILVP 238
Query: 241 AARAFPLEKLMNALKEYQKNSQQK--IFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNL 298
+ +P+++L+ A Y N K I +EY +++GVND+ +HA QL K+L +N+
Sbjct: 239 INKRYPIKELVAACNRYLDNLNDKRVITVEYTLINGVNDKPEHAKQLLKILRRMPSKLNI 298
Query: 299 IPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDK 357
IPFNP + S + S++++ +F++I+ I TTVR+ G +I ACGQLV + D+
Sbjct: 299 IPFNPFPN-SGYERPSEERILAFKEIIVHG-GIVTTVRRTRGDEIDAACGQLVGQVADR 355
>gi|438002576|ref|YP_007272319.1| Ribosomal RNA large subunit methyltransferase N [Tepidanaerobacter
acetatoxydans Re1]
gi|432179370|emb|CCP26343.1| Ribosomal RNA large subunit methyltransferase N [Tepidanaerobacter
acetatoxydans Re1]
Length = 288
Score = 206 bits (523), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 115/286 (40%), Positives = 171/286 (59%), Gaps = 19/286 (6%)
Query: 68 LHSVVDSSDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGC 127
++ +S D TTK + L++G VE+V M+Y S G +T CISSQVGC
Sbjct: 12 IYKKYESEIDETTKYVFALEDGQMVESVKMKY--SFG------------TTACISSQVGC 57
Query: 128 KMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSNIR--NVVFMGMGEPLNNYAALVEAV 185
MGC FCA+ G NL+ E+ ++++ + SN++ VV MG GEPL NY L++ +
Sbjct: 58 SMGCAFCASTEGGMVRNLAWWEMADEVIAIEKDSNVKISRVVVMGSGEPLLNYDELIQFL 117
Query: 186 RIMTG-LPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARA 244
RI+ L F +S +R+TVST GIV I + + + LAVSLHAP D+R +MP
Sbjct: 118 RILNSPLAFNISYRRLTVSTCGIVPKIIRLAEEGLPITLAVSLHAPNDDIRSSLMPINER 177
Query: 245 FPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPI 304
+P+ +L++A K Y ++++I EYI++ +ND EQ A +L LL+ VNLIP NP+
Sbjct: 178 YPILQLLDACKYYIMKTKRRITFEYILISDINDTEQCACELSNLLKDLLCHVNLIPLNPV 237
Query: 305 GSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 350
+F+ S D ++ F++IL + I TVR++MG DI+ ACGQL
Sbjct: 238 EG-KKFKKSDDSRIRKFEQILLNN-GISATVRREMGSDINAACGQL 281
>gi|225024692|ref|ZP_03713884.1| hypothetical protein EIKCOROL_01574 [Eikenella corrodens ATCC
23834]
gi|224942581|gb|EEG23790.1| hypothetical protein EIKCOROL_01574 [Eikenella corrodens ATCC
23834]
Length = 363
Score = 206 bits (523), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 132/359 (36%), Positives = 193/359 (53%), Gaps = 28/359 (7%)
Query: 9 FDGGIIRAEFEKAGIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTL 68
+D + A F + G K + +++ + ++DE L + + L + L
Sbjct: 8 YDLAGLTAHFAQMGEKPFRARQVMRWMHQGAAGDFDEMTDLAKSLRAKLNESAQVGVPAL 67
Query: 69 HSVVDSSDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCK 128
+ +S D T K L+ + G VE V + P R TLCISSQVGC
Sbjct: 68 MAAQESRDG-TRKWLLDVGTGNGVETVFI--------------PETDRGTLCISSQVGCA 112
Query: 129 MGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN--------IRNVVFMGMGEPLNNYAA 180
+ C FC+TG GF NLS+ EI+ QL A++ I NVV MGMGEPL NY
Sbjct: 113 LECTFCSTGRQGFNRNLSTAEIIGQLWWANKALGATPKDERVISNVVMMGMGEPLANYDN 172
Query: 181 LVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIM 239
+V A+ IM + +S +R+TVST G+V +++ D+P + LAVSLHAP +R +I+
Sbjct: 173 VVTALSIMLDDHGYALSRRRVTVSTSGMVPQMDRLKEDMP-VALAVSLHAPNDAIRNEIV 231
Query: 240 PAARAFPLEKLMNALKEYQ-KNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNL 298
P + +PL++LM A + Y K + + EY+MLDGVND+ +HA +L +L++ NL
Sbjct: 232 PLNKKYPLKELMAACQRYLVKAPRDFVTFEYVMLDGVNDKPEHARELLELVKDVPCKFNL 291
Query: 299 IPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDK 357
IPFNP + S + SSD+ + F+ IL + + TVRK G DI ACGQL + DK
Sbjct: 292 IPFNPFPN-SGYNRSSDENIRVFRDILYQA-GLVVTVRKTRGDDIDAACGQLAGQVQDK 348
>gi|261419372|ref|YP_003253054.1| ribosomal RNA large subunit methyltransferase N [Geobacillus sp.
Y412MC61]
gi|319766187|ref|YP_004131688.1| radical SAM enzyme, Cfr family [Geobacillus sp. Y412MC52]
gi|261375829|gb|ACX78572.1| radical SAM enzyme, Cfr family [Geobacillus sp. Y412MC61]
gi|317111053|gb|ADU93545.1| radical SAM enzyme, Cfr family [Geobacillus sp. Y412MC52]
Length = 365
Score = 205 bits (522), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 114/329 (34%), Positives = 193/329 (58%), Gaps = 29/329 (8%)
Query: 31 IWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHSVV-DSSDDVTTKLLVKLQNG 89
I++++ +N ++ + +LP L S F +TL +VV +S D T K L +L +G
Sbjct: 47 IYEWLYKNRVTDFADMTNLPKRLREQLASSFS--ITTLKTVVKQTSKDGTIKFLFELHDG 104
Query: 90 GFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGE 149
+E V+MR++ +++C+++QVGC++GC FCA+ G K +L +GE
Sbjct: 105 YSIETVLMRHNYG--------------NSVCVTTQVGCRIGCTFCASTLGGLKRHLEAGE 150
Query: 150 IVEQLVHASRL-----SNIRNVVFMGMGEPLNNYAALVEAVRIMT---GLPFQVSPKRIT 201
IV Q+V + + ++V MG+GEP +NY AL++ +RI+ GL + + IT
Sbjct: 151 IVAQVVQVQKALDDTNERVSSIVVMGIGEPFDNYDALIKFLRIVNHPKGL--NIGARHIT 208
Query: 202 VSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNS 261
VST GI+ I +F + +N A+SLHAP ++R ++MP +A+PL KLM A++ Y + +
Sbjct: 209 VSTSGIIPKIYQFADEGMQINFAISLHAPTNELRTKLMPINKAYPLPKLMEAVRYYIEKT 268
Query: 262 QQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSF 321
+++ EY + GVND+ +HA QL +L++ + VNLIP N + + RT ++ +F
Sbjct: 269 GRRVTFEYGLFGGVNDQLEHAEQLAELIKGLKCHVNLIPVNYVPERNYVRTPR-SQIFAF 327
Query: 322 QKILRGSYNIRTTVRKQMGQDISGACGQL 350
++ L+ + I T+R++ G DI ACGQL
Sbjct: 328 ERALK-KHGINVTIRREHGHDIDAACGQL 355
>gi|283782458|ref|YP_003373213.1| radical SAM enzyme, Cfr family [Pirellula staleyi DSM 6068]
gi|283440911|gb|ADB19353.1| radical SAM enzyme, Cfr family [Pirellula staleyi DSM 6068]
Length = 391
Score = 205 bits (522), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 123/340 (36%), Positives = 192/340 (56%), Gaps = 26/340 (7%)
Query: 33 KYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHSVVDSSDDVTTKLLVKLQNGGFV 92
K+V E +DE LP L +F T + + +S D T KLLV+ GG +
Sbjct: 65 KWVFELGASSFDEMTDLPKKLRDELAPEFTLWTGKVVTKSESPDG-TEKLLVEYPGGGRI 123
Query: 93 EAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVE 152
E V++R G R ++C+SSQVGC MGC FCA+G G NL++GEIVE
Sbjct: 124 ECVLLR--------------DGDRRSICVSSQVGCAMGCVFCASGLDGVDRNLTAGEIVE 169
Query: 153 QLVHASRL----SNIRNVVFMGMGEPLNNYAALVEAVRIMT---GLPFQVSPKRITVSTV 205
Q++ RL + ++V MGMGEPL N ++EA+ T GL +SP+RIT+STV
Sbjct: 170 QMLLLQRLLPEKERLSHIVMMGMGEPLANIDHVLEALGEATREDGL--GISPRRITISTV 227
Query: 206 GIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKI 265
G+ A++K + +LAVSLHAP ++R +++P +A +EK++ + Y + S +++
Sbjct: 228 GLPAALDKLCNLEAKYHLAVSLHAPNNELRTRLVPINKAIGIEKVIESADRYFETSGRRL 287
Query: 266 FIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKIL 325
EY++L GVND HA +L +LL ++N+IP+NP+ + ++T S + + F+ IL
Sbjct: 288 TFEYVLLAGVNDHPDHAQELAELLAGRTAMLNVIPYNPVAGLP-YKTPSGNAIHRFRNIL 346
Query: 326 RGSYNIRTTVRKQMGQDISGACGQLVVNLPDKISAKSTPP 365
+ I R++ G +I+ ACGQL + P + +S P
Sbjct: 347 VDA-GINVKFRQRKGSEINAACGQLRRSTPTLLGIESPAP 385
>gi|114320405|ref|YP_742088.1| radical SAM protein [Alkalilimnicola ehrlichii MLHE-1]
gi|122941195|sp|Q0A989.1|RLMN_ALHEH RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|114226799|gb|ABI56598.1| 23S rRNA m(2)A-2503 methyltransferase [Alkalilimnicola ehrlichii
MLHE-1]
Length = 360
Score = 205 bits (522), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 119/290 (41%), Positives = 172/290 (59%), Gaps = 24/290 (8%)
Query: 75 SDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFC 134
S+D T K L+++ G +E V + P R TLC+SSQVGC + C+FC
Sbjct: 71 SEDGTRKWLLRVDGGQAIETVFI--------------PDSGRGTLCVSSQVGCALDCSFC 116
Query: 135 ATGTMGFKSNLSSGEIVEQ-LVHASRLS----NIRNVVFMGMGEPLNNYAALVEAVRIMT 189
+T GF NLS+ EI+ Q V +L+ I NVVFMGMGEPL N A++ AVR+MT
Sbjct: 117 STAQQGFNRNLSTAEIIGQYYVAYDQLTGTGEQITNVVFMGMGEPLLNLEAVIPAVRLMT 176
Query: 190 -GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLE 248
+ +S +++T+ST G+V + + ++LAVSLHAP +R +++P R PLE
Sbjct: 177 DDDAYGLSKRKVTISTSGVVTMLERMREQ-TDVSLAVSLHAPNNALRDELVPINRKHPLE 235
Query: 249 KLMNALKEYQKNS-QQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSV 307
+L+ A Y + ++I EY+MLDGVND++ HAH+L +LL VNLIPFNP
Sbjct: 236 RLIPACAAYIADKPHRRITWEYVMLDGVNDQDHHAHELARLLGDIPSKVNLIPFNPFPG- 294
Query: 308 SQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDK 357
+++R S ++ F +IL+ S+ + T R GQDI GACGQLV + D+
Sbjct: 295 ARYRCSPRGRILRFVRILQ-SHGLTATTRVTRGQDIDGACGQLVGKVQDR 343
>gi|170288910|ref|YP_001739148.1| ribosomal RNA large subunit methyltransferase N [Thermotoga sp.
RQ2]
gi|205829920|sp|B1LAW7.1|RLMN_THESQ RecName: Full=Probable dual-specificity RNA methyltransferase RlmN;
AltName: Full=23S rRNA
(adenine(2503)-C(2))-methyltransferase; AltName:
Full=23S rRNA m2A2503 methyltransferase; AltName:
Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=tRNA (adenine(37)-C(2))-methyltransferase;
AltName: Full=tRNA m2A37 methyltransferase
gi|170176413|gb|ACB09465.1| radical SAM enzyme, Cfr family [Thermotoga sp. RQ2]
Length = 343
Score = 205 bits (522), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 120/339 (35%), Positives = 191/339 (56%), Gaps = 22/339 (6%)
Query: 16 AEFEKAGIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKFK-PLTSTLHSVVDS 74
AE G++++ I +V +DE +L +LL+ F P L V S
Sbjct: 14 AEVTSLGLERYRADQILDWVFNKKVNNFDEMTNLSKQHRALLKEHFSIPFLKLLDKKV-S 72
Query: 75 SDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFC 134
D TTK L +L++G +E+V++ + R T CIS+QVGC + C FC
Sbjct: 73 RIDGTTKFLWELEDGNTIESVMLFHPD--------------RITACISTQVGCPVKCIFC 118
Query: 135 ATGTMGFKSNLSSGEIVEQLVHASR--LSNIRNVVFMGMGEPLNNYAALVEAVRIMTGLP 192
ATG GF NL++GEIV Q++ R I NVV+MGMGEPL NY ++++RI+
Sbjct: 119 ATGMSGFVRNLTTGEIVAQILSMEREEKKKIGNVVYMGMGEPLLNYENTIKSIRILNHKK 178
Query: 193 F-QVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLM 251
+ +RIT+STVGI I + + + LA+SLHAP R Q++P + + +E+++
Sbjct: 179 MGNIGIRRITISTVGIPDRIIQLAEEGLDVKLALSLHAPTNFKRDQLVPLNKKYSIEEIL 238
Query: 252 NALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFR 311
NA+K YQ+ + ++ IEY+++ G+NDE A +L ++L+ ++ VNLIP NP + +
Sbjct: 239 NAVKIYQRKTGNRVTIEYVLIRGINDEISDAKKLAEILKNMKIFVNLIPVNP--TAEDLK 296
Query: 312 TSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 350
S +++ +F++IL + I +R++ G DI ACGQL
Sbjct: 297 KPSRERLLAFKRILLEN-GIEAEIRREKGSDIEAACGQL 334
>gi|227552455|ref|ZP_03982504.1| Fe-S-cluster redox enzyme [Enterococcus faecium TX1330]
gi|257888305|ref|ZP_05667958.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium 1,141,733]
gi|257896805|ref|ZP_05676458.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium Com12]
gi|257899742|ref|ZP_05679395.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium Com15]
gi|293378566|ref|ZP_06624729.1| radical SAM enzyme, Cfr family [Enterococcus faecium PC4.1]
gi|293573136|ref|ZP_06684073.1| radical SAM enzyme, Cfr family [Enterococcus faecium E980]
gi|424764142|ref|ZP_18191598.1| 23S rRNA methyltransferase [Enterococcus faecium TX1337RF]
gi|425055517|ref|ZP_18458991.1| 23S rRNA methyltransferase [Enterococcus faecium 505]
gi|431040136|ref|ZP_19492643.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E1590]
gi|431064364|ref|ZP_19493711.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E1604]
gi|431123802|ref|ZP_19498515.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E1613]
gi|431593526|ref|ZP_19521855.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E1861]
gi|431738470|ref|ZP_19527413.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E1972]
gi|431751095|ref|ZP_19539788.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E2620]
gi|431758108|ref|ZP_19546736.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E3083]
gi|431763569|ref|ZP_19552118.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E3548]
gi|227178412|gb|EEI59384.1| Fe-S-cluster redox enzyme [Enterococcus faecium TX1330]
gi|257824359|gb|EEV51291.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium 1,141,733]
gi|257833370|gb|EEV59791.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium Com12]
gi|257837654|gb|EEV62728.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium Com15]
gi|291606774|gb|EFF36159.1| radical SAM enzyme, Cfr family [Enterococcus faecium E980]
gi|292642895|gb|EFF61042.1| radical SAM enzyme, Cfr family [Enterococcus faecium PC4.1]
gi|402421174|gb|EJV53436.1| 23S rRNA methyltransferase [Enterococcus faecium TX1337RF]
gi|403033825|gb|EJY45310.1| 23S rRNA methyltransferase [Enterococcus faecium 505]
gi|430561988|gb|ELB01241.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E1590]
gi|430567434|gb|ELB06518.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E1613]
gi|430569005|gb|ELB08035.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E1604]
gi|430591403|gb|ELB29441.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E1861]
gi|430597198|gb|ELB35001.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E1972]
gi|430615912|gb|ELB52844.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E2620]
gi|430617771|gb|ELB54635.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E3083]
gi|430621942|gb|ELB58683.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E3548]
Length = 355
Score = 205 bits (522), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 122/356 (34%), Positives = 189/356 (53%), Gaps = 30/356 (8%)
Query: 18 FEKAGIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKF--KPLTSTLHSVVDSS 75
F + G K+ +W+++ + + E +L L + F PL VV +
Sbjct: 18 FIENGEKKFRAAQVWEWLYQKRVSNFTEMTNLSKQLIEKLSAHFIINPLKQM---VVQEA 74
Query: 76 DDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCA 135
D T K L +L + +E V+MR + L ++C+++QVGC +GC FCA
Sbjct: 75 SDGTVKYLFELPDKNMIETVLMRQEYGL--------------SVCVTTQVGCNIGCTFCA 120
Query: 136 TGTMGFKSNLSSGEIVEQLVHASRLSNIRN-------VVFMGMGEPLNNYAALVEAVRIM 188
+G + +L++GEIV Q++ + RN VV MG+GEP +NY +++ + I+
Sbjct: 121 SGLLKKNRDLTAGEIVAQIMMVQHYFDERNLGERVSHVVVMGIGEPFDNYDNVMDFLHII 180
Query: 189 TGLP-FQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPL 247
+ + ITVST G+ H I +F ++ +NLA+SLHAP +VR IM R+FP+
Sbjct: 181 NDAKGLAIGARHITVSTSGLAHKIKEFANNGLQVNLAISLHAPNNEVRTSIMRINRSFPI 240
Query: 248 EKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQ--VVVNLIPFNPIG 305
EKLM A+ EY + + ++I EYIML+ VND +HA QL LL+ + VNLIP+NP+
Sbjct: 241 EKLMEAVDEYLEKTNRRITFEYIMLNQVNDRPEHAQQLADLLKDKKKLAYVNLIPYNPVS 300
Query: 306 SVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDKISAK 361
Q+ S V F +L+ + + +RK+ G DI ACGQL K +AK
Sbjct: 301 EHDQYSRSPKADVLRFYDVLKKN-GVNCVIRKEHGTDIDAACGQLRSKQMKKTAAK 355
>gi|379704816|ref|YP_005203275.1| 2-oxoglutarate synthase subunit, 2-oxoacid-ferredoxin
oxidoreductase subunit CD [Streptococcus infantarius
subsp. infantarius CJ18]
gi|374681515|gb|AEZ61804.1| 23S rRNA m2A2503 methyltransferase [Streptococcus infantarius
subsp. infantarius CJ18]
Length = 366
Score = 205 bits (522), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 119/346 (34%), Positives = 191/346 (55%), Gaps = 34/346 (9%)
Query: 22 GIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKF--KPLTSTLHSVVDSSDDVT 79
G K+ IW ++ ++E ++ ++L F PL VV + D T
Sbjct: 28 GEKKFRATQIWDWLYRKRVQSFEEMTNISKDFIAILNENFCVNPLK---QRVVQEASDGT 84
Query: 80 TKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTM 139
K L +L +G +E V+MR L ++C++SQVGC +GC+FCA+G +
Sbjct: 85 VKYLFELPDGMLIETVLMRQHYGL--------------SVCVTSQVGCNIGCSFCASGLI 130
Query: 140 GFKSNLSSGEIVEQLVHASRLSNIR-------NVVFMGMGEPLNNYAALVEAVRIMT--- 189
+ +L+SGEI Q++ + + R +VV MG+GEP +NY ++ VR +
Sbjct: 131 KKQRDLTSGEITSQIMMVQKYFDERGQDERVSHVVVMGIGEPFDNYDNVLRFVRTINNDN 190
Query: 190 GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEK 249
GL + + IT+ST G+ H I +F + +NLAVSLHAP ++R QIM R+FPLEK
Sbjct: 191 GLA--IGARHITISTSGLAHKIREFAHESLQVNLAVSLHAPNNELRSQIMRVNRSFPLEK 248
Query: 250 LMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVV--VNLIPFNPIGSV 307
L A++ Y + + +++ EYIML+ VND ++A +L L + + + +NLIP+NP+
Sbjct: 249 LFTAIEYYIETTNRRVTFEYIMLNDVNDSPENAQELADLTKKIRKLSYINLIPYNPVSEH 308
Query: 308 SQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVN 353
Q+R SS + V++F +L+ + + VR++ G DI ACGQL N
Sbjct: 309 DQYRRSSKEHVAAFYDVLKKN-GVNCVVRQEHGTDIDAACGQLRSN 353
>gi|448823482|ref|YP_007416647.1| hypothetical protein CU7111_0810 [Corynebacterium urealyticum DSM
7111]
gi|448276979|gb|AGE36403.1| hypothetical protein CU7111_0810 [Corynebacterium urealyticum DSM
7111]
Length = 370
Score = 205 bits (522), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 125/326 (38%), Positives = 179/326 (54%), Gaps = 34/326 (10%)
Query: 45 EFPSLPSAAYSLLRSKFKPLTSTLHSVVDSSDDVTTKLLVKLQNGGFVEAVIMRYDSSLG 104
E LP A+ ++ K P T +D+ D T K L +L +G +E+V+MRY
Sbjct: 60 EMTDLPEASRQAVKEKLFPALMTPLRKLDADDGETRKTLWRLHDGTLLESVLMRY----- 114
Query: 105 KYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRL---- 160
PG R+TLCISSQ GC M C FCATG G NLS GEIVEQ+ +A+R
Sbjct: 115 -------PG--RATLCISSQAGCGMACPFCATGQGGLDRNLSVGEIVEQVRNAARAMRDG 165
Query: 161 ------SNIRNVVFMGMGEPLNNYAALVEAVRIMTGLP---FQVSPKRITVSTVGIVHAI 211
+ N+VFMGMGEPL NY +VEAVR +T F +S + +TVSTVG+ AI
Sbjct: 166 EVAGTEGRLSNIVFMGMGEPLANYKRVVEAVRQITQPEPHGFGISQRNVTVSTVGLAPAI 225
Query: 212 NKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIM 271
K + + LAVSLH P ++R ++P + +E++++A Y + S +++ IEY +
Sbjct: 226 RKLADEDMSVRLAVSLHTPDDELRDTLVPVNNRWSVEEVLDAAAYYAEKSGRRVSIEYAL 285
Query: 272 LDGVNDEEQHAHQLGKLLETF---QVVVNLIPFNPIGSVSQFRTSSDDKVSSF-QKILRG 327
+ +ND+ A LGK L +V VNLIP NP S++ S ++ F Q+++
Sbjct: 286 IRDINDQPWRADMLGKKLHKALGSKVHVNLIPLNPTPG-SKWDASPKERQDEFVQRVI-- 342
Query: 328 SYNIRTTVRKQMGQDISGACGQLVVN 353
+ + TVR GQ+I+ ACGQL
Sbjct: 343 AQGVPCTVRDTKGQEIAAACGQLAAE 368
>gi|357392153|ref|YP_004906994.1| hypothetical protein KSE_52620 [Kitasatospora setae KM-6054]
gi|311898630|dbj|BAJ31038.1| hypothetical protein KSE_52620 [Kitasatospora setae KM-6054]
Length = 366
Score = 205 bits (522), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 119/322 (36%), Positives = 179/322 (55%), Gaps = 29/322 (9%)
Query: 44 DEFPSLPSAAYSLLRSKFKPLTSTLHSVVDSSDDVTTKLLVKLQNGGFVEAVIMRYDSSL 103
+ + +P+A+ + L P ++ V DD T K L KL +G VE+V+MRY
Sbjct: 59 ESWTDIPAASRTKLTEALLPELMSVVRHVSCDDDATRKTLWKLFDGTLVESVLMRYPD-- 116
Query: 104 GKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASR---- 159
R T+CISSQ GC M C FCATG G NLS+ EIVEQ+ R
Sbjct: 117 ------------RVTMCISSQAGCGMNCPFCATGQAGLTRNLSTAEIVEQIASGMRDLRT 164
Query: 160 ------LSNIRNVVFMGMGEPLNNYAALVEAVRIMTGLP---FQVSPKRITVSTVGIVHA 210
+ + NVVFMGMGEPL NY ++ A+R +T F +S + ITVSTVG+V A
Sbjct: 165 GAVPGGEARLSNVVFMGMGEPLANYNRVLSAIRRLTDPSPDGFGLSQRGITVSTVGLVPA 224
Query: 211 INKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYI 270
+++F + LA+SLHAP ++R +++P + ++++++A Y + S +++ IEY
Sbjct: 225 MHRFADEGLSCRLALSLHAPDDELRDELVPVNTRWKVDEVLDAAWNYAEKSGRRVSIEYA 284
Query: 271 MLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYN 330
++ +ND+ A LG+L+ +V VNLIP NP S++ S + F + L+ ++
Sbjct: 285 LIKDINDQAWRADLLGRLIRNRRVHVNLIPLNPTPG-SKWTASRPEDEREFVRRLQ-AHG 342
Query: 331 IRTTVRKQMGQDISGACGQLVV 352
+ TTVR GQ+I GACGQL
Sbjct: 343 VPTTVRDTRGQEIDGACGQLAA 364
>gi|291454431|ref|ZP_06593821.1| conserved hypothetical protein [Streptomyces albus J1074]
gi|359148682|ref|ZP_09181802.1| ribosomal RNA large subunit methyltransferase N [Streptomyces sp.
S4]
gi|421741379|ref|ZP_16179582.1| 23S rRNA m2A2503 methyltransferase [Streptomyces sp. SM8]
gi|291357380|gb|EFE84282.1| conserved hypothetical protein [Streptomyces albus J1074]
gi|406690220|gb|EKC94038.1| 23S rRNA m2A2503 methyltransferase [Streptomyces sp. SM8]
Length = 370
Score = 205 bits (522), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 119/324 (36%), Positives = 176/324 (54%), Gaps = 33/324 (10%)
Query: 45 EFPSLPSAAYSLLRSKFKPLTSTLHSVVDSSDDVTTKLLVKLQNGGFVEAVIMRYDSSLG 104
E+ +P+ + LRS+ P ++ + DD T K L +L +G VE+V+MRY
Sbjct: 63 EWTDIPAGSREKLRSELLPDLMSVVRHISCDDDTTRKTLWRLHDGTLVESVLMRYPD--- 119
Query: 105 KYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRL---- 160
R T+CISSQ GC M C FCATG G NLS+ EIV Q+V R
Sbjct: 120 -----------RVTMCISSQAGCGMNCPFCATGQAGLDRNLSTAEIVHQIVDGMRALRDG 168
Query: 161 ------SNIRNVVFMGMGEPLNNYAALVEAVRIMT-----GLPFQVSPKRITVSTVGIVH 209
+ + N+VFMGMGEPL NY + A+R +T GL +S + ITVSTVG+V
Sbjct: 169 EVPGGPARLSNIVFMGMGEPLANYNRVTGAIRRLTDPEPDGL--GLSQRGITVSTVGLVP 226
Query: 210 AINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEY 269
AI++F + LAVSLHAP ++R ++P + + +++++ EY + S +++ IEY
Sbjct: 227 AIHRFADEGFKCRLAVSLHAPDDELRDTLVPVNTRWKVREVLDSAWEYAEKSGRRVSIEY 286
Query: 270 IMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSY 329
++ +ND+ LG+LL+ +V VNLIP NP + +D+ + + I S+
Sbjct: 287 ALIRDINDQAWRGDLLGRLLKNKRVHVNLIPLNPTPGSKWTASRPEDEKAFVEAI--ASH 344
Query: 330 NIRTTVRKQMGQDISGACGQLVVN 353
+ TVR GQ+I GACGQL
Sbjct: 345 GVPVTVRDTRGQEIDGACGQLAAT 368
>gi|237745020|ref|ZP_04575501.1| radical SAM family enzyme [Fusobacterium sp. 7_1]
gi|229432249|gb|EEO42461.1| radical SAM family enzyme [Fusobacterium sp. 7_1]
Length = 358
Score = 205 bits (522), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 121/336 (36%), Positives = 185/336 (55%), Gaps = 17/336 (5%)
Query: 22 GIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSK-FKPLTSTLHSVVDSSDDVTT 80
G+K+ + ++ ++ + +DE +L +L+ K + P + L + S D T
Sbjct: 24 GLKKFYGKEVFIWLHKKITRSFDEMTNLSLKDREILKEKTYIPFFNLLKHQI-SKIDRTE 82
Query: 81 KLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMG 140
K L +L++ G +E V++R+ S K R+TLCISSQVGC + C+FCATG G
Sbjct: 83 KFLFELEDKGTIETVLLRHKDSKNK--------EIRNTLCISSQVGCPVKCSFCATGQSG 134
Query: 141 FKSNLSSGEIVEQLVHASRL-----SNIRNVVFMGMGEPLNNYAALVEAVRIMTGLP-FQ 194
+ NLS EI+ Q+ R + N+VFMGMGEPL N L +++ I++
Sbjct: 135 YMRNLSVSEILNQVYTVERRLRKKGETLNNLVFMGMGEPLLNIDNLAKSLSIISNENGIN 194
Query: 195 VSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNAL 254
+S ++IT+ST G+V I K D + LA+SLH+ + + R +I+P + FPLE L L
Sbjct: 195 ISKRKITISTSGVVSGIEKILLDKIPIELAISLHSAINEKRDKIIPLNKNFPLEDLSAVL 254
Query: 255 KEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSS 314
EYQK ++++I EYI++D N E A+ L + F VVNLIP+N + V R S
Sbjct: 255 IEYQKQTKRRITFEYILIDNFNISETDANALADFVHQFDHVVNLIPYNEVEGVEHTRPSV 314
Query: 315 DDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 350
K+ F L+ + T+R++ G DI GACGQL
Sbjct: 315 -KKIDKFYNYLKNVRRVNVTLRQEKGSDIDGACGQL 349
>gi|172040504|ref|YP_001800218.1| ribosomal RNA large subunit methyltransferase N [Corynebacterium
urealyticum DSM 7109]
gi|171851808|emb|CAQ04784.1| conserved hypothetical protein [Corynebacterium urealyticum DSM
7109]
Length = 370
Score = 205 bits (522), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 125/326 (38%), Positives = 179/326 (54%), Gaps = 34/326 (10%)
Query: 45 EFPSLPSAAYSLLRSKFKPLTSTLHSVVDSSDDVTTKLLVKLQNGGFVEAVIMRYDSSLG 104
E LP A+ ++ K P T +D+ D T K L +L +G +E+V+MRY
Sbjct: 60 EMTDLPEASRQAVKEKLFPALMTPLRKLDADDGETRKTLWRLHDGTLLESVLMRY----- 114
Query: 105 KYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRL---- 160
PG R+TLCISSQ GC M C FCATG G NLS GEIVEQ+ +A+R
Sbjct: 115 -------PG--RATLCISSQAGCGMACPFCATGQGGLDRNLSVGEIVEQVRNAARAMRDG 165
Query: 161 ------SNIRNVVFMGMGEPLNNYAALVEAVRIMTGLP---FQVSPKRITVSTVGIVHAI 211
+ N+VFMGMGEPL NY +VEAVR +T F +S + +TVSTVG+ AI
Sbjct: 166 EVAGIEGRLSNIVFMGMGEPLANYKRVVEAVRQITQPEPHGFGISQRNVTVSTVGLAPAI 225
Query: 212 NKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIM 271
K + + LAVSLH P ++R ++P + +E++++A Y + S +++ IEY +
Sbjct: 226 RKLADEDMSVRLAVSLHTPDDELRDTLVPVNNRWSVEEVLDAAAYYAEKSGRRVSIEYAL 285
Query: 272 LDGVNDEEQHAHQLGKLLETF---QVVVNLIPFNPIGSVSQFRTSSDDKVSSF-QKILRG 327
+ +ND+ A LGK L +V VNLIP NP S++ S ++ F Q+++
Sbjct: 286 IRDINDQPWRADMLGKKLHKALGSKVHVNLIPLNPTPG-SKWDASPKERQDEFVQRVI-- 342
Query: 328 SYNIRTTVRKQMGQDISGACGQLVVN 353
+ + TVR GQ+I+ ACGQL
Sbjct: 343 AQGVPCTVRDTKGQEIAAACGQLAAE 368
>gi|336400464|ref|ZP_08581243.1| ribosomal RNA large subunit methyltransferase N [Fusobacterium sp.
21_1A]
gi|336162652|gb|EGN65616.1| ribosomal RNA large subunit methyltransferase N [Fusobacterium sp.
21_1A]
Length = 358
Score = 205 bits (522), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 121/336 (36%), Positives = 185/336 (55%), Gaps = 17/336 (5%)
Query: 22 GIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSK-FKPLTSTLHSVVDSSDDVTT 80
G+K+ + ++ ++ + +DE +L +L+ K + P + L + S D T
Sbjct: 24 GLKKFYGKEVFIWLHKKITRSFDEMTNLSLKDREILKEKTYIPFFNLLKHQI-SKIDRTE 82
Query: 81 KLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMG 140
K L +L++ G +E V++R+ S K R+TLCISSQVGC + C+FCATG G
Sbjct: 83 KFLFELEDKGTIETVLLRHKDSKNK--------EIRNTLCISSQVGCPVKCSFCATGQSG 134
Query: 141 FKSNLSSGEIVEQLVHASRL-----SNIRNVVFMGMGEPLNNYAALVEAVRIMTGLP-FQ 194
+ NLS EI+ Q+ R + N+VFMGMGEPL N L +++ I++
Sbjct: 135 YMRNLSVSEILNQIYTIERRLRKKGETLNNLVFMGMGEPLLNIDNLAKSLSIISNENGIN 194
Query: 195 VSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNAL 254
+S ++IT+ST G+V I K D + LA+SLH+ + + R +I+P + FPLE L L
Sbjct: 195 ISKRKITISTSGVVSGIEKILLDKIPIELAISLHSAINEKRDKIIPLNKNFPLEDLSAVL 254
Query: 255 KEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSS 314
EYQK ++++I EYI++D N E A+ L + F VVNLIP+N + V R S
Sbjct: 255 IEYQKQTKRRITFEYILIDNFNISETDANALADFVHQFDHVVNLIPYNEVEGVEHTRPSV 314
Query: 315 DDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 350
K+ F L+ + T+R++ G DI GACGQL
Sbjct: 315 -KKIDKFYNYLKNVRKVNVTLRQEKGSDIDGACGQL 349
>gi|334143334|ref|YP_004536490.1| ribosomal RNA large subunit methyltransferase N
[Thioalkalimicrobium cyclicum ALM1]
gi|333964245|gb|AEG31011.1| Ribosomal RNA large subunit methyltransferase N
[Thioalkalimicrobium cyclicum ALM1]
Length = 385
Score = 205 bits (522), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 121/294 (41%), Positives = 171/294 (58%), Gaps = 28/294 (9%)
Query: 75 SDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFC 134
SDD T K L+++ +E V + P R TLCISSQVGC + C+FC
Sbjct: 87 SDDGTIKWLIEVDQQNSIETVFI--------------PEADRGTLCISSQVGCALDCSFC 132
Query: 135 ATGTMGFKSNLSSGEIVEQL--VHASRLSN------IRNVVFMGMGEPLNNYAALVEAVR 186
AT GF NL + EI+ Q+ V+ + +N I NVVFMGMGEPL N + +
Sbjct: 133 ATAQQGFNRNLENWEIIAQMWVVNKALGANPKAERKISNVVFMGMGEPLLNVTHVFPVAK 192
Query: 187 -IMTGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAF 245
+M + +S +R+T+ST G+V AI+K +++ ++LA+SLHAP +R +++P + +
Sbjct: 193 LLMDDNAYGLSKRRVTISTAGVVPAIDKLKAEV-DVSLAISLHAPNNALRDELVPVNKKY 251
Query: 246 PLEKLMNALKEYQKNSQQK--IFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNP 303
PLE LM AL+ Y + K I +EY+MLD VNDE +HAHQL LL VNLIPFNP
Sbjct: 252 PLEVLMPALRRYVADGHAKKHITVEYVMLDQVNDEIEHAHQLVGLLGDLVCKVNLIPFNP 311
Query: 304 IGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDK 357
+ R SS+++V FQ++L + I T+RK G DI ACGQL + D+
Sbjct: 312 FPNTPYLR-SSNNRVHRFQRVLHEA-GINCTIRKTRGDDIDAACGQLAGKVKDR 363
>gi|297530651|ref|YP_003671926.1| Cfr family radical SAM protein [Geobacillus sp. C56-T3]
gi|297253903|gb|ADI27349.1| radical SAM enzyme, Cfr family [Geobacillus sp. C56-T3]
Length = 365
Score = 205 bits (522), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 114/329 (34%), Positives = 192/329 (58%), Gaps = 29/329 (8%)
Query: 31 IWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHSVV-DSSDDVTTKLLVKLQNG 89
I++++ +N ++ + +LP L S F +TL +VV +S D T K L +L +G
Sbjct: 47 IYEWLYQNRVTDFADMTNLPKRLREQLASSFS--ITTLKTVVKQTSKDGTIKFLFELHDG 104
Query: 90 GFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGE 149
+E V+MR+ +++C+++QVGC++GC FCA+ G K +L +GE
Sbjct: 105 YSIETVLMRHHYG--------------NSVCVTTQVGCRIGCTFCASTLGGLKRHLEAGE 150
Query: 150 IVEQLVHASRL-----SNIRNVVFMGMGEPLNNYAALVEAVRIMT---GLPFQVSPKRIT 201
IV Q+V + + ++V MG+GEP +NY AL++ +RI+ GL + + IT
Sbjct: 151 IVAQVVQVQKALDDTNERVSSIVVMGIGEPFDNYDALIKFLRIVNHPKGL--NIGARHIT 208
Query: 202 VSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNS 261
VST GI+ I +F + +N A+SLHAP ++R ++MP +A+PL KLM A++ Y + +
Sbjct: 209 VSTSGIIPKIYQFADEGMQINFAISLHAPTNELRTKLMPINKAYPLPKLMEAVRYYIEKT 268
Query: 262 QQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSF 321
+++ EY + GVND+ +HA QL +L++ + VNLIP N + + RT ++ +F
Sbjct: 269 GRRVTFEYGLFGGVNDQLEHAEQLAELIKGLKCHVNLIPVNYVPERNYVRTPR-SQIFAF 327
Query: 322 QKILRGSYNIRTTVRKQMGQDISGACGQL 350
++ L+ + I T+R++ G DI ACGQL
Sbjct: 328 ERALK-KHGINVTIRREHGHDIDAACGQL 355
>gi|256390734|ref|YP_003112298.1| ribosomal RNA large subunit methyltransferase N [Catenulispora
acidiphila DSM 44928]
gi|256356960|gb|ACU70457.1| radical SAM enzyme, Cfr family [Catenulispora acidiphila DSM 44928]
Length = 395
Score = 205 bits (522), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 124/348 (35%), Positives = 188/348 (54%), Gaps = 37/348 (10%)
Query: 18 FEKAGIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHSVVDSSDD 77
F A + QH+ ++ ++P +W + +P+A L P T + +
Sbjct: 69 FRAAQVSQHYF----GHLADDP-AQWSD---VPAAKREELAGILTPRLLTPIREQTADNG 120
Query: 78 VTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATG 137
T K L +L +G VE+V+MRY R+T+C+SSQ GC M C FCATG
Sbjct: 121 TTRKTLWRLFDGATVESVLMRYRD--------------RTTMCVSSQAGCGMNCPFCATG 166
Query: 138 TMGFKSNLSSGEIVEQLVHASRL----------SNIRNVVFMGMGEPLNNYAALVEAVRI 187
G N+S+GEIVEQ+V +R + NVVFMGMGEPL NY A++ AVR
Sbjct: 167 QAGLTRNMSTGEIVEQVVAGARTMARGEVPGGPGRVSNVVFMGMGEPLANYKAVIGAVRR 226
Query: 188 MTG-LP--FQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARA 244
+T +P +S + ITVSTVG+V AI K ++ + LAVSLHAP ++R ++P
Sbjct: 227 LTEPVPDGLGLSARHITVSTVGLVPAIEKLTAEAIPVTLAVSLHAPDDELRDTLVPVNTR 286
Query: 245 FPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPI 304
+ + ++++A Y +++++ IEY ++ +ND+ A +LG++L V VNLIP NP
Sbjct: 287 WNVSEVLDAAWRYASVTKRRVSIEYALIKDINDQAWRADRLGRMLRNKLVHVNLIPLNPT 346
Query: 305 GSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVV 352
S++ S + F + L+ + + TVR G+DI GACGQL
Sbjct: 347 PG-SKWTASRPQDEAEFVRRLQ-EWGVPVTVRDTRGRDIDGACGQLAA 392
>gi|91788473|ref|YP_549425.1| hypothetical protein Bpro_2611 [Polaromonas sp. JS666]
gi|123164823|sp|Q12AB5.1|RLMN_POLSJ RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|91697698|gb|ABE44527.1| 23S rRNA m(2)A-2503 methyltransferase [Polaromonas sp. JS666]
Length = 382
Score = 205 bits (521), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 133/326 (40%), Positives = 177/326 (54%), Gaps = 39/326 (11%)
Query: 56 LLRSKFKPLTSTLH----SVVDSSD--DVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGK 109
L RS + L + H VV D D T K L + G +EAV +
Sbjct: 48 LARSLREKLAGSAHIQGPKVVSRHDSADGTIKWLFDVGAGDVIEAVFI------------ 95
Query: 110 PRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN------- 162
P R TLCISSQ GC +GC FC+TG GF NL++GEIV QL A
Sbjct: 96 --PETDRGTLCISSQAGCAVGCRFCSTGHQGFSRNLTTGEIVSQLWFAEHFLRQHLGRQE 153
Query: 163 --IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLP 219
I NVV MGMGEPL NY+ LV A+R+M + +S +R+TVST G+V I++ D P
Sbjct: 154 RVISNVVMMGMGEPLQNYSQLVPALRVMLDDHGYGLSRRRVTVSTSGVVPMIDRLAKDCP 213
Query: 220 GLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQK-IFIEYIMLDGVNDE 278
+ LAVSLHAP +R ++P + +P+ +L+ A YQ ++ + I EY MLDGVND+
Sbjct: 214 -VALAVSLHAPQDALRDSLVPLNKKYPIAELLQACTRYQASAPRDFITFEYCMLDGVNDQ 272
Query: 279 EQHAHQLGKLLET-----FQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRT 333
+HA QL L++ NLIPFNP S + S+ +V++F KIL + I T
Sbjct: 273 PEHARQLVALMQNHSAGGLSCKFNLIPFNPF-PASGLKRSAMPQVAAFAKILMDA-GIVT 330
Query: 334 TVRKQMGQDISGACGQLVVNLPDKIS 359
TVRK G DI ACGQL ++ D+ S
Sbjct: 331 TVRKTRGDDIDAACGQLAGDVQDRTS 356
>gi|420263010|ref|ZP_14765650.1| cfr family radical SAM enzyme [Enterococcus sp. C1]
gi|394769974|gb|EJF49792.1| cfr family radical SAM enzyme [Enterococcus sp. C1]
Length = 355
Score = 205 bits (521), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 120/334 (35%), Positives = 184/334 (55%), Gaps = 34/334 (10%)
Query: 31 IWKYVIENPNCEWDEFPSLPSAAYSLLRSKF--KPLTSTLHSVVDSSDDVTTKLLVKLQN 88
+W+++ E ++E +LP L + F PL VV + D T K L +L +
Sbjct: 30 VWEWLYEKRVTSFEEMTNLPKPVIEKLTAAFVINPLKQM---VVQEASDGTVKYLFQLPD 86
Query: 89 GGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSG 148
+E V+MR + + ++C+++QVGC +GC FCA+G + + +L++G
Sbjct: 87 NHMIETVLMRQEYGM--------------SVCVTTQVGCNIGCTFCASGLLKKQRDLTAG 132
Query: 149 EIVEQLVHASRLSNIRN-------VVFMGMGEPLNNYAALVEAVRIMT---GLPFQVSPK 198
EIV Q++ + RN VV MG+GEP +NY ++ ++I+ GL + +
Sbjct: 133 EIVAQIMLVQHYFDERNEGERVSHVVVMGIGEPFDNYDNVMHFLQIINDPKGLA--IGAR 190
Query: 199 RITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQ 258
ITVST G+ H I +F + +NLA+SLHAP +VR +M R FP+EKLM A+ Y
Sbjct: 191 HITVSTSGLAHKIKEFAENGLQVNLAISLHAPNNEVRTSMMRINRNFPIEKLMAAVDYYL 250
Query: 259 KNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVV--VNLIPFNPIGSVSQFRTSSDD 316
+ + ++I EYIMLD VND +HA QL LL+ + + VNLIP+NP+ Q+ S
Sbjct: 251 EKTNRRITFEYIMLDHVNDRPEHARQLAALLKDKKKLSYVNLIPYNPVSEHDQYARSKKA 310
Query: 317 KVSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 350
V +F IL+ + I +RK+ G DI ACGQL
Sbjct: 311 DVLAFYDILKKN-GINCVIRKEHGTDIDAACGQL 343
>gi|119476380|ref|ZP_01616731.1| predicted Fe-S-cluster redox enzyme [marine gamma proteobacterium
HTCC2143]
gi|119450244|gb|EAW31479.1| predicted Fe-S-cluster redox enzyme [marine gamma proteobacterium
HTCC2143]
Length = 386
Score = 205 bits (521), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 114/298 (38%), Positives = 176/298 (59%), Gaps = 30/298 (10%)
Query: 73 DSSDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCN 132
+ S D T K +++ GG VE V++ P G R TLC+SSQVGC + C+
Sbjct: 86 NDSVDGTRKWAIRIAGGGLVETVLI--------------PDGDRGTLCVSSQVGCSLDCS 131
Query: 133 FCATGTMGFKSNLSSGEIVEQLVHA---------SRLSNIRNVVFMGMGEPLNNYAALVE 183
FC+TG GF+ +LS+ EI+ Q+ A + I NVV MGMGEPL N+ +V+
Sbjct: 132 FCSTGKQGFQRDLSAAEIIGQVWLAINSYDAFPSTNKRIITNVVMMGMGEPLLNFDNVVQ 191
Query: 184 AVRIMT-GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAA 242
++ +M + +S +R+T+ST G+V A++K D+ ++LA+SLHAP ++R Q++P
Sbjct: 192 SMSLMMDDFGYGISKRRVTLSTSGVVPALDKL-GDVSEVSLAISLHAPNDELRSQLVPIN 250
Query: 243 RAFPLEKLMNALKEY---QKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLI 299
+ +P+ +L+ A Y Q ++ + +EY ++ GVND +HA +L KLL+ F +NLI
Sbjct: 251 KKYPIAELLAACGRYWAKQTDTHRVTTVEYTLIAGVNDSREHAKELAKLLKDFPCKINLI 310
Query: 300 PFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDK 357
PFNP S+S ++ S + F ++L S +I TTVR G DI ACGQLV + D+
Sbjct: 311 PFNPF-SLSDYQRPSKKTIDQFWQVLSNS-SIVTTVRNTRGDDIDAACGQLVGQVADR 366
>gi|120610108|ref|YP_969786.1| radical SAM protein [Acidovorax citrulli AAC00-1]
gi|205829658|sp|A1TM24.1|RLMN_ACIAC RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|120588572|gb|ABM32012.1| 23S rRNA m(2)A-2503 methyltransferase [Acidovorax citrulli AAC00-1]
Length = 373
Score = 205 bits (521), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 129/302 (42%), Positives = 172/302 (56%), Gaps = 33/302 (10%)
Query: 75 SDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFC 134
S D T K L + +G VE+V + P R TLCISSQ GC +GC FC
Sbjct: 73 SADGTVKWLFDVGDGNAVESVFI--------------PEDDRGTLCISSQAGCAVGCRFC 118
Query: 135 ATGTMGFKSNLSSGEIVEQLVHA-----SRLSN----IRNVVFMGMGEPLNNYAALVEAV 185
+TG GF NL+SGEIV QL A +RL I NVV MGMGEPL NY ALV A+
Sbjct: 119 STGHQGFSRNLTSGEIVAQLWFAEHALRARLGTQERVISNVVMMGMGEPLQNYTALVPAL 178
Query: 186 RIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARA 244
R M + +S +R+TVST G+V +++ D + +AVSLHAP +R Q++P R
Sbjct: 179 RTMLDDHGYGLSRRRLTVSTSGVVPMMDRLSQDC-AVAMAVSLHAPNDALRDQLVPLNRK 237
Query: 245 FPLEKLMNALKEYQKNSQQK-IFIEYIMLDGVNDEEQHAHQLGKLL-----ETFQVVVNL 298
+PL +L++A Y +++ + I EY MLDGVND+ +HA QL L+ E + NL
Sbjct: 238 YPLRELLDACTRYLEHAPRDFITFEYCMLDGVNDQPEHARQLIDLVRPRGGEGVRCKFNL 297
Query: 299 IPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDKI 358
IPFNP S S+ +V++F K+L + I TTVRK G DI ACGQL ++ D+
Sbjct: 298 IPFNPF-PASGLHRSNPQQVAAFAKMLSDA-GIVTTVRKTRGDDIDAACGQLAGDVKDRT 355
Query: 359 SA 360
A
Sbjct: 356 RA 357
>gi|83647153|ref|YP_435588.1| Fe-S-cluster redox protein [Hahella chejuensis KCTC 2396]
gi|123753570|sp|Q2SDW1.1|RLMN_HAHCH RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|83635196|gb|ABC31163.1| predicted Fe-S-cluster redox enzyme [Hahella chejuensis KCTC 2396]
Length = 378
Score = 205 bits (521), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 131/355 (36%), Positives = 195/355 (54%), Gaps = 36/355 (10%)
Query: 18 FEKAGIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTS-TLHSVV--DS 74
FE G K+ + K++ ++D ++ A LR K K + ++ V+ D
Sbjct: 22 FESLGEKKFRATQLMKWMYHLGVSDFDLMTNMSKA----LREKLKEVAEVSVPEVIYEDI 77
Query: 75 SDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFC 134
S D T K +++L G +E V + P R TLC+SSQ+GC + C+FC
Sbjct: 78 SADGTRKWVMRLAGGNSIETVYI--------------PDNGRGTLCVSSQIGCSLDCSFC 123
Query: 135 ATGTMGFKSNLSSGEIVEQLVHASR------LSNIR---NVVFMGMGEPLNNYAALVEAV 185
+TG GF NLSS EI+ QL A+R LS R N+VFMGMGEPL N+ +V A
Sbjct: 124 STGKQGFNRNLSSAEIIGQLWIAARSFGDYDLSKERYVTNIVFMGMGEPLLNFDNVVRAC 183
Query: 186 RI-MTGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARA 244
+ M F +S +R+TVST G+V A++K D+ ++LA+SLHAP +R ++P +
Sbjct: 184 DVMMDDFGFGISKRRLTVSTSGLVPALDKL-GDVTDVSLAISLHAPNNSLRDVLVPVNKK 242
Query: 245 FPLEKLMNALKEY--QKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFN 302
+P+E+L+ A Y + + +++I +EY ++ GVND E HAH+L LL +NLIPFN
Sbjct: 243 YPIEELLAACHRYLGKLSDKRRITVEYTLIAGVNDSETHAHELRDLLRDLPCKINLIPFN 302
Query: 303 PIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDK 357
P + S + S + FQK+L + + TVR G DI ACGQLV + D+
Sbjct: 303 PFPN-SGYERPSRNATLRFQKVLSDAGYV-ATVRTTRGDDIDAACGQLVGRVEDR 355
>gi|452974521|gb|EME74341.1| ribosomal RNA large subunit methyltransferase N [Bacillus
sonorensis L12]
Length = 362
Score = 205 bits (521), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 117/350 (33%), Positives = 198/350 (56%), Gaps = 27/350 (7%)
Query: 9 FDGGIIRAEFEKAGIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTL 68
F+ I+ E+ G K I++++ + +DE +L + L+ +F LT+
Sbjct: 22 FEIDDIKNWLEENGEKPFRATQIFEWLYDKRISSFDEMTNLSKELRTKLKEQF-VLTTLK 80
Query: 69 HSVVDSSDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCK 128
+V +S D T K L +L +G +E V+MR+D +++C+++QVGC+
Sbjct: 81 TAVKQTSQDGTMKFLFELHDGYTIETVLMRHDYG--------------NSVCVTTQVGCR 126
Query: 129 MGCNFCATGTMGFKSNLSSGEIVEQLVHASRL-----SNIRNVVFMGMGEPLNNYAALVE 183
+GC FCA+ G K NL +GEIV Q+V + + ++V MG+GEP +N+ ++
Sbjct: 127 IGCTFCASTLGGLKRNLEAGEIVAQVVKVQQALDETDERVSSIVIMGIGEPFDNFQEMLA 186
Query: 184 AVRIMT---GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMP 240
++I+ GL + + ITVST GI+ I +F + +N A+SLHAP ++R ++MP
Sbjct: 187 FLKIVNHDKGL--NIGARHITVSTSGIIPKIYEFADEKLQINFAISLHAPNTEIRSRLMP 244
Query: 241 AARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIP 300
RA+ L +LM A++ Y K + +++ EY + GVND+ +HA +L +LL+ + VNLIP
Sbjct: 245 INRAYKLPELMKAVEYYIKKTGRRVTFEYGLFGGVNDQVEHAEELAELLKGIKCHVNLIP 304
Query: 301 FNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 350
N + RT D++ +F+K L+ S+ + T+R++ G DI ACGQL
Sbjct: 305 VNYVPERDYVRTPK-DQIFAFEKTLK-SHGVNVTIRREQGHDIDAACGQL 352
>gi|390454601|ref|ZP_10240129.1| hypothetical protein PpeoK3_11317 [Paenibacillus peoriae KCTC 3763]
Length = 365
Score = 205 bits (521), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 116/330 (35%), Positives = 181/330 (54%), Gaps = 26/330 (7%)
Query: 31 IWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHSVVDSSDDVTTKLLVKLQNGG 90
+W + ++ + LL F TS H V S D T K L +LQ+G
Sbjct: 31 VWDALYRKRITDFAAMTEVHEDCVRLLEEHFSIETSEEH-VKQQSADGTVKFLFRLQDGN 89
Query: 91 FVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEI 150
+E V+MR+ L ++C+++QVGC +GC+FCA+G + +LSSGEI
Sbjct: 90 LIETVLMRHKFGL--------------SVCVTTQVGCNIGCSFCASGLLKKSRDLSSGEI 135
Query: 151 VEQLVHASRL-------SNIRNVVFMGMGEPLNNYAALVEAVRIMTGLP-FQVSPKRITV 202
VEQ++ + +VV MG+GEP +N+ L + +R++ + P+ ITV
Sbjct: 136 VEQIMKVQLYLDKERPGDRVSHVVVMGIGEPFDNFVNLSDFIRVIKDHKGLAIGPRHITV 195
Query: 203 STVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQ 262
ST G+ I +F +NLA+SLHAP ++R +IM RA P+EKLM A+ Y +
Sbjct: 196 STSGLADKIIEFADSDLHVNLAISLHAPNNEIRTRIMKINRAIPIEKLMQAIDYYLDKTN 255
Query: 263 QKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVV--VNLIPFNPIGSVSQFRTSSDDKVSS 320
++I +EYI+L GVND ++HA +L +L+ + + VNLIP+NP+ SQ++ S + ++
Sbjct: 256 RRITLEYILLKGVNDGKEHALELAELVGHRRNLANVNLIPYNPVDEHSQYQRSESESITG 315
Query: 321 FQKILRGSYNIRTTVRKQMGQDISGACGQL 350
F +L+ I +VR + G DI ACGQL
Sbjct: 316 FYDVLK-KQGISCSVRLEHGVDIDAACGQL 344
>gi|326316277|ref|YP_004233949.1| radical SAM family protein [Acidovorax avenae subsp. avenae ATCC
19860]
gi|323373113|gb|ADX45382.1| radical SAM enzyme, Cfr family [Acidovorax avenae subsp. avenae
ATCC 19860]
Length = 373
Score = 205 bits (521), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 129/302 (42%), Positives = 172/302 (56%), Gaps = 33/302 (10%)
Query: 75 SDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFC 134
S D T K L + +G VE+V + P R TLCISSQ GC +GC FC
Sbjct: 73 SADGTVKWLFDVGDGNAVESVFI--------------PEDDRGTLCISSQAGCAVGCRFC 118
Query: 135 ATGTMGFKSNLSSGEIVEQLVHA-----SRLSN----IRNVVFMGMGEPLNNYAALVEAV 185
+TG GF NL+SGEIV QL A +RL I NVV MGMGEPL NY ALV A+
Sbjct: 119 STGHQGFSRNLTSGEIVAQLWFAEHALRARLGTQERVISNVVMMGMGEPLQNYTALVPAL 178
Query: 186 RIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARA 244
R M + +S +R+TVST G+V +++ D + +AVSLHAP +R Q++P R
Sbjct: 179 RTMLDDHGYGLSRRRLTVSTSGVVPMMDRLSQDC-AVAMAVSLHAPNDALRDQLVPLNRK 237
Query: 245 FPLEKLMNALKEYQKNSQQK-IFIEYIMLDGVNDEEQHAHQLGKLL-----ETFQVVVNL 298
+PL +L++A Y +++ + I EY MLDGVND+ +HA QL L+ E + NL
Sbjct: 238 YPLRELLDACTRYLEHAPRDFITFEYCMLDGVNDQPEHARQLIDLVRPRGAEGVRCKFNL 297
Query: 299 IPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDKI 358
IPFNP S S+ +V++F K+L + I TTVRK G DI ACGQL ++ D+
Sbjct: 298 IPFNPF-PASGLHRSNPGQVAAFAKLLSDA-GIVTTVRKTRGDDIDAACGQLAGDVKDRT 355
Query: 359 SA 360
A
Sbjct: 356 RA 357
>gi|256844888|ref|ZP_05550346.1| radical SAM family enzyme [Fusobacterium sp. 3_1_36A2]
gi|256718447|gb|EEU32002.1| radical SAM family enzyme [Fusobacterium sp. 3_1_36A2]
Length = 358
Score = 205 bits (521), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 122/336 (36%), Positives = 186/336 (55%), Gaps = 17/336 (5%)
Query: 22 GIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSK-FKPLTSTLHSVVDSSDDVTT 80
G+K+ + ++ ++ + +DE +L +L+ K + P + L V S D T
Sbjct: 24 GLKKFYGKEVFIWLHKKITRSFDEMTNLSLKDREILKEKTYIPFFNLLKYQV-SKIDKTE 82
Query: 81 KLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMG 140
K L +L++ G +E V++R+ S K R R+TLC+SSQVGC + C+FCATG G
Sbjct: 83 KFLFELEDKGTIETVLLRHKDS------KNRE--IRNTLCVSSQVGCPVKCSFCATGQSG 134
Query: 141 FKSNLSSGEIVEQLVHASRL-----SNIRNVVFMGMGEPLNNYAALVEAVRIMTGLP-FQ 194
+ NLS EI+ Q+ R + N+VFMGMGEPL N L +++ I++
Sbjct: 135 YMRNLSVSEILNQIYTVERRLRKKGETLNNLVFMGMGEPLLNIDNLAKSLSIISNENGIN 194
Query: 195 VSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNAL 254
+S ++IT+ST G+V I K D + LA+SLH+ + + R +I+P + FPLE L L
Sbjct: 195 ISKRKITISTSGVVSGIEKILLDKIPIELAISLHSAINEKRDKIIPLNKNFPLEDLSAVL 254
Query: 255 KEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSS 314
EYQK ++++I EYI++D N E A+ L + F VVNLIP+N + V R S
Sbjct: 255 VEYQKQTKRRITFEYILIDNFNISEADANALADFIHQFDHVVNLIPYNEVEGVEHTRPSV 314
Query: 315 DDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 350
K+ F L+ + T+R++ G DI GACGQL
Sbjct: 315 -KKIDKFYNYLKNVRKVNVTLRQEKGSDIDGACGQL 349
>gi|32474560|ref|NP_867554.1| Fe-S oxidoreductase [Rhodopirellula baltica SH 1]
gi|81660696|sp|Q7UPG1.1|Y6963_RHOBA RecName: Full=Probable RNA methyltransferase RB6963
gi|32445099|emb|CAD75101.1| conserved hypothetical protein-putative Fe-S-cluster redox enzyme
[Rhodopirellula baltica SH 1]
Length = 379
Score = 205 bits (521), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 117/309 (37%), Positives = 174/309 (56%), Gaps = 22/309 (7%)
Query: 68 LHSVVDSSDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGC 127
L+ +DS D TKLL + ++G +E+VI+R + R+TLC+SSQ+GC
Sbjct: 64 LYQRMDSEIDGATKLLFETESGMLIESVILRIATG-------------RTTLCVSSQIGC 110
Query: 128 KMGCNFCATGTMGFKSNLSSGEIVEQLVHASRL-----SNIRNVVFMGMGEPLNNYAALV 182
C+FCATG MG NL++ EI++Q+V A ++ + N+VFMGMGEPL+N +
Sbjct: 111 AAACDFCATGKMGIAKNLATEEILDQVVQAGQILRGEDRRLSNIVFMGMGEPLHNEVNVT 170
Query: 183 EAVRIMTGLP-FQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPA 241
EA+ ++T F SP + VSTVG+ + + P LNLA+SLH+ Q R +I+P
Sbjct: 171 EAIELLTAPDHFARSPSTVLVSTVGVPAGMLRLAKRFPNLNLALSLHSADQTTREKIIPL 230
Query: 242 ARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPF 301
+ L +L +A+ E Q ++ IEY+ML VND + A +L + +V VNLIP+
Sbjct: 231 GKKASLAQLHDAIHEIQTIQDREFMIEYLMLRDVNDSAKDADRLIDWIGDLRVHVNLIPY 290
Query: 302 NPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLV--VNLPDKIS 359
N I + SS + SF IL+ S ++TTVR +G DI ACGQL+ N +
Sbjct: 291 NTIEASPHLHASSRPVIESFADILKAS-GLKTTVRYSLGNDIEAACGQLIRQENRQRAMQ 349
Query: 360 AKSTPPVTD 368
A+ T +D
Sbjct: 350 ARRTESESD 358
>gi|288554554|ref|YP_003426489.1| ribosomal RNA large subunit methyltransferase N [Bacillus
pseudofirmus OF4]
gi|288545714|gb|ADC49597.1| ribosomal RNA methyltransferase N, heat shock prot [Bacillus
pseudofirmus OF4]
Length = 360
Score = 205 bits (521), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 118/339 (34%), Positives = 186/339 (54%), Gaps = 26/339 (7%)
Query: 22 GIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHSVVDSSDDVTTK 81
G K+ +W ++ +DE ++ LLR F T T H +SSD T K
Sbjct: 22 GHKKFRATQVWDWLYRKRVKSFDEMNNVNKDCLELLRENFVISTLTEHVKQESSDG-TIK 80
Query: 82 LLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGF 141
L KL +G +E V+M++ L ++C+++QVGC +GC+FCA+G +
Sbjct: 81 FLFKLYDGNLIETVLMKHKYGL--------------SVCVTTQVGCNIGCSFCASGLLKK 126
Query: 142 KSNLSSGEIVEQLVHAS-------RLSNIRNVVFMGMGEPLNNYAALVEAVRIMTGLP-F 193
+LSSGEIVEQ+++ + + ++V MG+GEP +N+ +V+ + IM
Sbjct: 127 SRDLSSGEIVEQIMNVQHHLDSVGKDERVSHIVVMGIGEPFDNFDNMVDFLEIMKDHKGL 186
Query: 194 QVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNA 253
+ + ITVST G+ I +F +NLA+SLHAP ++R +IM +A P+EKLM A
Sbjct: 187 AIGARHITVSTSGLADKIYEFADLKLQVNLAISLHAPNNELRTKIMKINKAIPIEKLMKA 246
Query: 254 LKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQ--VVVNLIPFNPIGSVSQFR 311
+ Y + + +KI IEYI+L GVND+ +HA +L ++ + + VNLIP+NP+ Q++
Sbjct: 247 IDYYLEKTNRKITIEYILLKGVNDQREHAKELAEMFKDKRHLTYVNLIPYNPVDEHGQYQ 306
Query: 312 TSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 350
S + + F L+ + I VR + G DI ACGQL
Sbjct: 307 RSIKEDILGFYDELKKN-GINCGVRLEHGTDIDAACGQL 344
>gi|88703674|ref|ZP_01101390.1| Radical SAM superfamily protein [Congregibacter litoralis KT71]
gi|88702388|gb|EAQ99491.1| Radical SAM superfamily protein [Congregibacter litoralis KT71]
Length = 381
Score = 205 bits (521), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 127/360 (35%), Positives = 201/360 (55%), Gaps = 37/360 (10%)
Query: 14 IRAEFEKAGIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHSVVD 73
+ A F + G K+ + K++ C++ +L A LR + + VV+
Sbjct: 24 LEAFFLEMGEKRFRAQQLMKWMHHQGECDFSAMSNLGKA----LRERLSAIAEVRPPVVE 79
Query: 74 S---SDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMG 130
S S D T K LV + GG VE V++ P G R+TLC+SSQVGC +
Sbjct: 80 SQHDSSDGTRKWLVHVDGGGLVETVLI--------------PDGNRATLCVSSQVGCSLD 125
Query: 131 CNFCATGTMGFKSNLSSGEIVEQLVHASRLSN---------IRNVVFMGMGEPLNNYAAL 181
C+FC+TG GF+ +LS+ EI+ Q+ A + + + NVV MGMGEPL N+ +
Sbjct: 126 CSFCSTGKQGFQRDLSAAEIIGQVWLAIKSYDAFQSGNGRVVTNVVMMGMGEPLLNFDNV 185
Query: 182 VEAVRIMT-GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMP 240
V A+ +M L + +S +R+T+ST G+V A++K +++ +LAVSLHAP ++R Q++P
Sbjct: 186 VTAMNLMMDDLGYGISKRRVTLSTSGVVPALDKL-AEVSEASLAVSLHAPNDELRNQLVP 244
Query: 241 AARAFPLEKLMNALKEY---QKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVN 297
R +P+ +L+ + + Y QK+ ++ + IEY ++ G+ND+ + A +L LL F +N
Sbjct: 245 VNRRYPIAQLLASAQRYIDAQKDKKRVVTIEYTLMAGINDQPEQARELALLLADFPCKIN 304
Query: 298 LIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDK 357
LIPFNP + S + S + VS F ++L + + TVR G DI ACGQLV + D+
Sbjct: 305 LIPFNPFPN-SGYERPSGNAVSRFWQVLVDAGFV-VTVRTTRGDDIDAACGQLVGEVVDR 362
>gi|333369698|ref|ZP_08461804.1| cfr family radical SAM enzyme [Psychrobacter sp. 1501(2011)]
gi|332970237|gb|EGK09230.1| cfr family radical SAM enzyme [Psychrobacter sp. 1501(2011)]
Length = 403
Score = 205 bits (521), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 118/299 (39%), Positives = 181/299 (60%), Gaps = 28/299 (9%)
Query: 75 SDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFC 134
S+D T K + K+ G VE V++ D S K NG R TLCISSQVGC + C+FC
Sbjct: 96 SEDGTRKWVFKVAGGSLVETVLIPADDS--KVNG-------RKTLCISSQVGCALDCSFC 146
Query: 135 ATGTMGFKSNLSSGEIVEQL--VHASRL---------SNIRNVVFMGMGEPLNNYAALVE 183
+TG GF+ +L++ EI+ QL +AS + +N+ NVV MGMGEPL NY +V
Sbjct: 147 STGKQGFERDLTAAEIIGQLWVANASYMEGVDSSEWQNNVTNVVMMGMGEPLLNYKPVVS 206
Query: 184 AVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAA 242
++ +M + + +S +R+T+ST G+V + + D+ + LA+SLHAP ++R +++P
Sbjct: 207 SMSLMLSDHAYGLSKRRVTLSTSGVVPKMYDLYKDI-DVALAISLHAPNDELRNELVPIN 265
Query: 243 RAFPLEKLMNALKEYQKNS----QQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNL 298
+ +PL +L+ A K Y ++ ++ + IEY+ML GVND ++HAHQL LLE +NL
Sbjct: 266 KKYPLSELIAAAKAYVHDNNPRHKKHVTIEYVMLAGVNDSDEHAHQLVALLEGLPSKINL 325
Query: 299 IPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDK 357
IPFNP + + SS++++ +F IL + T+R+ G DI ACGQLV + D+
Sbjct: 326 IPFNPFPH-APYDRSSNNRIHAFSNILNNA-GFVCTIRQTRGDDIDAACGQLVGQVADR 382
>gi|225164328|ref|ZP_03726595.1| radical SAM enzyme, Cfr family [Diplosphaera colitermitum TAV2]
gi|224801062|gb|EEG19391.1| radical SAM enzyme, Cfr family [Diplosphaera colitermitum TAV2]
Length = 375
Score = 205 bits (521), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 122/339 (35%), Positives = 180/339 (53%), Gaps = 31/339 (9%)
Query: 31 IWKYVIENPNCEWDEFPSLPSAAYSLLRSKFK--PLTSTLHSVVDSSDDVTTKLLVKLQN 88
I +V + WD+ +L A + L F P L + D T KLL++L +
Sbjct: 35 ILDWVYKKRARSWDDMTNLSKALRAWLAETFVLIPAALVLDKQSHDAHDATDKLLLELGD 94
Query: 89 GGFVEAVIMRYDSSLGKYNGKPRPG----GPRSTLCISSQVGCKMGCNFCATGTMGFKSN 144
VE VI+R P+ G R T+CIS+QVGC M C FCA+G G K +
Sbjct: 95 ASLVETVIIR----------APQDGVGLEHSRKTICISTQVGCAMACAFCASGLAGLKRD 144
Query: 145 LSSGEIVEQLVHA------------SRLSNIRNVVFMGMGEPLNNYAALVEAVRIMTG-L 191
L +GEIV QL+H S L++ N+V MGMGEPL NY A+V A+RI+
Sbjct: 145 LLAGEIVAQLLHVCYREDARTPRARSELASFDNIVVMGMGEPLANYDAIVRALRIVNAEW 204
Query: 192 PFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLM 251
V +RIT+ST G+V I K + G+ LA+SLH +VR +IMP +AFPL KL+
Sbjct: 205 GLGVGARRITLSTSGLVPKILKLADEDLGIRLAISLHGATDEVRERIMPVNKAFPLAKLI 264
Query: 252 NALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFR 311
A+K + + + + + +E+I+++ VND + A L + VNLIP+N + + ++
Sbjct: 265 PAVKTFSEKNGRMVTLEFILIEEVNDTIEQAEALCYIARDLHAHVNLIPYNTVEGL-LWK 323
Query: 312 TSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 350
S + F +LR + + T+R++ G DI ACGQL
Sbjct: 324 RPSLTRQERFADVLRAA-RVSVTLRREKGHDIDAACGQL 361
>gi|15644462|ref|NP_229514.1| ribosomal RNA large subunit methyltransferase N [Thermotoga
maritima MSB8]
gi|403253350|ref|ZP_10919651.1| ribosomal RNA large subunit methyltransferase N [Thermotoga sp.
EMP]
gi|418045773|ref|ZP_12683868.1| Ribosomal RNA large subunit methyltransferase N [Thermotoga
maritima MSB8]
gi|81553682|sp|Q9X240.1|RLMN_THEMA RecName: Full=Probable dual-specificity RNA methyltransferase RlmN;
AltName: Full=23S rRNA
(adenine(2503)-C(2))-methyltransferase; AltName:
Full=23S rRNA m2A2503 methyltransferase; AltName:
Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=tRNA (adenine(37)-C(2))-methyltransferase;
AltName: Full=tRNA m2A37 methyltransferase
gi|4982292|gb|AAD36781.1|AE001811_1 conserved hypothetical protein [Thermotoga maritima MSB8]
gi|351676658|gb|EHA59811.1| Ribosomal RNA large subunit methyltransferase N [Thermotoga
maritima MSB8]
gi|402810884|gb|EJX25372.1| ribosomal RNA large subunit methyltransferase N [Thermotoga sp.
EMP]
Length = 343
Score = 205 bits (521), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 119/338 (35%), Positives = 189/338 (55%), Gaps = 20/338 (5%)
Query: 16 AEFEKAGIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHSVVDSS 75
E G++++ I +V + +DE +L +LL+ F L S
Sbjct: 14 TEITNLGLERYRADQILDWVFDKKVNNFDEMTNLSKKHRALLKEHFSISFLKLLDKKVSR 73
Query: 76 DDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCA 135
D TTK L +L++G +E+V++ + R T CIS+QVGC + C FCA
Sbjct: 74 IDGTTKFLWELEDGNTIESVMLFHPD--------------RITACISTQVGCPVKCIFCA 119
Query: 136 TGTMGFKSNLSSGEIVEQLVHASR--LSNIRNVVFMGMGEPLNNYAALVEAVRIMTGLPF 193
TG GF NL++GEIV Q++ + I NVV+MGMGEPL NY ++++RI+
Sbjct: 120 TGMSGFVRNLTTGEIVAQILSMEKEEKKKIGNVVYMGMGEPLLNYENTIKSIRILNHKKM 179
Query: 194 -QVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMN 252
+ +RIT+STVGI I + + + LA+SLHAP R Q++P + + +E+++N
Sbjct: 180 GNIGIRRITISTVGIPDRIIQLAEEGLDVKLALSLHAPTNFKRDQLVPLNKKYSIEEILN 239
Query: 253 ALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRT 312
A+K YQ+ + ++ IEY+++ G+NDE A +L ++L +V VNLIP NP +V R
Sbjct: 240 AVKIYQRKTGNRVTIEYVLIRGINDEISDAKKLAEILRNMKVFVNLIPVNP--TVEGLRR 297
Query: 313 SSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 350
S +++ +F++IL + I +R++ G DI ACGQL
Sbjct: 298 PSRERLLTFKRILLEN-GIEAEIRREKGTDIEAACGQL 334
>gi|56962848|ref|YP_174574.1| chloramphenicol/florfenicol resistance protein [Bacillus clausii
KSM-K16]
gi|81366753|sp|Q5WJ42.1|CFR_BACSK RecName: Full=Ribosomal RNA large subunit methyltransferase Cfr;
AltName: Full=23S rRNA
(adenine(2503)-C(8))-methyltransferase; AltName:
Full=23S rRNA m8A2503 methyltransferase
gi|56909086|dbj|BAD63613.1| florfenicol/chloramphenicol resistance protein [Bacillus clausii
KSM-K16]
Length = 350
Score = 205 bits (521), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 114/315 (36%), Positives = 186/315 (59%), Gaps = 22/315 (6%)
Query: 43 WDEFPSLPSAAYSLLRSKFKPLTSTLHSVVDSSDDVTTKLLVKLQNGGFVEAVIMRYDSS 102
+++ +LP A L ++F P T+ V++++ TK+L+K+ VEAV M Y++
Sbjct: 42 FNKMTTLPKALRESLINEFGPSILTVEPVLETTSQQVTKVLLKVAGNNQVEAVRMHYEAG 101
Query: 103 LGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHAS-RLS 161
+ CISSQ GC +GC FC+TG +G K NLS+ E+ +QL++ +
Sbjct: 102 W-------------ESFCISSQCGCGLGCTFCSTGAIGLKQNLSADEMTDQLLYFYLKGH 148
Query: 162 NIRNVVFMGMGEPLNNYAALVEAVRIMTGLP-FQVSPKRITVSTVGIVHAINKFHSDLPG 220
++ +V FMGMGE L N + +A+ ++ F +SP+RITVSTVGI+ I + S P
Sbjct: 149 SLDSVSFMGMGEALAN-VRIFDALNVLVDRQLFALSPRRITVSTVGIIPNIQRMTSSFPQ 207
Query: 221 LNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQ 280
+NL SLH+P D R ++MP +PL+++MN L ++ + +K++I Y+ML GVND E+
Sbjct: 208 MNLTFSLHSPFHDQRSELMPINNKYPLDQVMNVLDQHIHETGRKVYIAYVMLRGVNDSEK 267
Query: 281 HAHQLGKLLETFQ----VVVNLIPFNP-IGSVSQFRTSSDDKVSSFQKILRGSYNIRTTV 335
HA L K + + VNLI +NP +G+ + + ++K+ +F ++++ S I T+
Sbjct: 268 HAEALVKRILNNRYPHLYHVNLIRYNPTVGTPENYGQTIEEKLQTFYRVVK-SARIPVTI 326
Query: 336 RKQMGQDISGACGQL 350
R Q G++I ACGQL
Sbjct: 327 RSQFGREIDAACGQL 341
>gi|226939612|ref|YP_002794685.1| hypothetical protein LHK_00683 [Laribacter hongkongensis HLHK9]
gi|254807186|sp|C1DD41.1|RLMN_LARHH RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|226714538|gb|ACO73676.1| Radical SAM domain containing protein [Laribacter hongkongensis
HLHK9]
Length = 366
Score = 205 bits (521), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 133/363 (36%), Positives = 193/363 (53%), Gaps = 35/363 (9%)
Query: 17 EFEKAGIKQHFIPLIWKYVIENPNCEW------DEFPSLPSAAYSLLRSKFKPLTSTLHS 70
+F + +HF + K W ++F ++ A SL T T+ S
Sbjct: 7 DFTLPALTEHFAAMGEKPFRAKQVMRWMHQMGQNDFDAMTDLAKSLRAKLHDTATVTVPS 66
Query: 71 VV--DSSDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCK 128
++ +S D T K L+ + G VE V + P R TLC+SSQVGC
Sbjct: 67 LMLEQASSDGTRKWLLDVGTGNRVETVFI--------------PEDDRGTLCVSSQVGCA 112
Query: 129 MGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN--------IRNVVFMGMGEPLNNYAA 180
+ C FC+TG GF NLS+ EI+ QL A++ I NVV MGMGEPL NY
Sbjct: 113 LECTFCSTGRQGFNRNLSTAEIIGQLWWANKSMGVTPKNERVISNVVMMGMGEPLANYDN 172
Query: 181 LVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIM 239
+V A+RIM + +S +R+T+ST G+V A+++ D P + LAVSLHAP +R +I+
Sbjct: 173 VVAAMRIMLDDHGYGLSRRRVTLSTSGLVPAMDRLREDCP-VALAVSLHAPNDRIRDEIV 231
Query: 240 PAARAFPLEKLMNALKEY-QKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNL 298
P + +PL +L+ A + Y +K + + EY+MLD +ND +HA +L L+ NL
Sbjct: 232 PINKKYPLRELLAACERYLEKAPRDFVTFEYVMLDQINDRPEHARELVALVRDVPCKFNL 291
Query: 299 IPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDKI 358
IPFNP + S + +S++ V +F+ IL + I TTVRK G+DI ACGQL + DK
Sbjct: 292 IPFNPFPN-SGYGRASNNAVRAFRDILAEAGYI-TTVRKTRGEDIDAACGQLAGQVQDKT 349
Query: 359 SAK 361
K
Sbjct: 350 QRK 352
>gi|423138477|ref|ZP_17126120.1| ribosomal RNA large subunit methyltransferase N [Fusobacterium
nucleatum subsp. animalis F0419]
gi|371957842|gb|EHO75585.1| ribosomal RNA large subunit methyltransferase N [Fusobacterium
nucleatum subsp. animalis F0419]
Length = 358
Score = 205 bits (521), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 120/336 (35%), Positives = 185/336 (55%), Gaps = 17/336 (5%)
Query: 22 GIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSK-FKPLTSTLHSVVDSSDDVTT 80
G+K+ + ++ ++ + +DE +L +L+ K + P + L + S D T
Sbjct: 24 GLKKFYGKEVFIWLHKKITRSFDEMTNLSLKDREILKEKTYIPFFNLLKHQI-SKIDRTE 82
Query: 81 KLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMG 140
K L +L++ G +E V++R+ S K R+TLC+SSQVGC + C+FCATG G
Sbjct: 83 KFLFELEDKGTIETVLLRHKDSKNK--------EIRNTLCVSSQVGCPVKCSFCATGQSG 134
Query: 141 FKSNLSSGEIVEQLVHASRL-----SNIRNVVFMGMGEPLNNYAALVEAVRIMTGLP-FQ 194
+ NLS EI+ Q+ R + N+VFMGMGEPL N L +++ I++
Sbjct: 135 YMRNLSVSEILNQVYTVERRLRKKGETLNNLVFMGMGEPLLNIDNLAKSLSIISNENGIN 194
Query: 195 VSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNAL 254
+S ++IT+ST G+V I K D + LA+SLH+ + + R +I+P + FPLE L L
Sbjct: 195 ISKRKITISTSGVVSGIEKILLDKIPIELAISLHSAINEKRDKIIPLNKNFPLEDLSAVL 254
Query: 255 KEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSS 314
EYQK ++++I EYI++D N E A+ L + F VVNLIP+N + V R S
Sbjct: 255 IEYQKQTKRRITFEYILIDNFNISETDANALADFVHQFDHVVNLIPYNEVEGVEHTRPSV 314
Query: 315 DDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 350
K+ F L+ + T+R++ G DI GACGQL
Sbjct: 315 -KKIDKFYNYLKNVRRVNVTLRQEKGSDIDGACGQL 349
>gi|397667169|ref|YP_006508706.1| putative Fe-S containing enzyme [Legionella pneumophila subsp.
pneumophila]
gi|395130580|emb|CCD08825.1| putative Fe-S containing enzyme [Legionella pneumophila subsp.
pneumophila]
Length = 382
Score = 205 bits (521), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 121/296 (40%), Positives = 174/296 (58%), Gaps = 28/296 (9%)
Query: 75 SDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFC 134
S D T K L+KL+ G +E V + P R TLC+SSQVGC + C+FC
Sbjct: 76 SADGTHKWLLKLECGNCIETVFI--------------PEANRGTLCVSSQVGCALNCSFC 121
Query: 135 ATGTMGFKSNLSSGEIVEQLVHASR-LSN--------IRNVVFMGMGEPLNNYAALVEAV 185
+T GF NLS+ EI+ Q+ A+R LS+ I NVV MGMGEPL N+ +V A+
Sbjct: 122 STAKQGFNRNLSTAEIIGQVWLAARELSDNNGTHDKKITNVVMMGMGEPLLNFDNVVSAM 181
Query: 186 RIMT-GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARA 244
IM L + +S +R+T+ST G++ + + P + LAVSLHAP ++R +++P +
Sbjct: 182 NIMMDDLAYGLSKRRVTLSTSGVLPEMERLREVSP-VALAVSLHAPTDELRNELVPINKK 240
Query: 245 FPLEKLMNALKEYQKNS-QQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNP 303
+PL +L++ K Y K+ ++K+ EY+ML GVND+ +HA QL KLL VNLIPFNP
Sbjct: 241 YPLSQLISLCKRYFKDEPRRKVTFEYVMLKGVNDQPEHASQLIKLLHNVPAKVNLIPFNP 300
Query: 304 IGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDKIS 359
++Q++ SS + + +F+ L + I T RK G DI ACGQL + DK S
Sbjct: 301 F-PLTQYQRSSRETIDAFRDKLM-KHGINTITRKTRGDDIDAACGQLAGEVKDKTS 354
>gi|205829856|sp|Q5ZV93.2|RLMN_LEGPH RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|307610246|emb|CBW99808.1| hypothetical protein LPW_15701 [Legionella pneumophila 130b]
Length = 382
Score = 205 bits (521), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 121/296 (40%), Positives = 174/296 (58%), Gaps = 28/296 (9%)
Query: 75 SDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFC 134
S D T K L+KL+ G +E V + P R TLC+SSQVGC + C+FC
Sbjct: 76 SADGTHKWLLKLECGNCIETVFI--------------PEANRGTLCVSSQVGCALNCSFC 121
Query: 135 ATGTMGFKSNLSSGEIVEQLVHASR-LSN--------IRNVVFMGMGEPLNNYAALVEAV 185
+T GF NLS+ EI+ Q+ A+R LS+ I NVV MGMGEPL N+ +V A+
Sbjct: 122 STAKQGFNRNLSTAEIIGQVWLAARELSDNNGTHDKKITNVVMMGMGEPLLNFDNVVSAM 181
Query: 186 RIMT-GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARA 244
IM L + +S +R+T+ST G++ + + P + LAVSLHAP ++R +++P +
Sbjct: 182 NIMMDDLAYGLSKRRVTLSTSGVLPEMERLREVSP-VALAVSLHAPTDELRNELVPINKK 240
Query: 245 FPLEKLMNALKEYQKNS-QQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNP 303
+PL +L++ K Y K+ ++K+ EY+ML GVND+ +HA QL KLL VNLIPFNP
Sbjct: 241 YPLSQLISLCKRYFKDEPRRKVTFEYVMLKGVNDQPEHASQLIKLLHNVPAKVNLIPFNP 300
Query: 304 IGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDKIS 359
++Q++ SS + + +F+ L + I T RK G DI ACGQL + DK S
Sbjct: 301 F-PLTQYQRSSRETIDAFRDKLM-KHGINTITRKTRGDDIDAACGQLAGEVKDKTS 354
>gi|257087248|ref|ZP_05581609.1| conserved hypothetical protein [Enterococcus faecalis D6]
gi|422724088|ref|ZP_16780578.1| radical SAM enzyme, Cfr family [Enterococcus faecalis TX2137]
gi|424672515|ref|ZP_18109474.1| 23S rRNA methyltransferase [Enterococcus faecalis 599]
gi|256995278|gb|EEU82580.1| conserved hypothetical protein [Enterococcus faecalis D6]
gi|315026051|gb|EFT37983.1| radical SAM enzyme, Cfr family [Enterococcus faecalis TX2137]
gi|402355552|gb|EJU90324.1| 23S rRNA methyltransferase [Enterococcus faecalis 599]
Length = 357
Score = 204 bits (520), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 120/345 (34%), Positives = 186/345 (53%), Gaps = 30/345 (8%)
Query: 18 FEKAGIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHSVVDSSDD 77
F G K+ +W+++ + E ++ + +LL F L +V + D
Sbjct: 18 FLAHGEKKFRATQVWEWLYTKRVASFSEMSNISKSLMTLLEENF-SLNPLKQVIVQEAQD 76
Query: 78 VTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATG 137
T K L +L + +E V+MR + L ++C+++QVGC +GC FCA+G
Sbjct: 77 GTVKYLFELPDKNMIETVLMRQEYGL--------------SVCVTTQVGCNIGCTFCASG 122
Query: 138 TMGFKSNLSSGEIVEQLVHASRLSNIR-------NVVFMGMGEPLNNYAALVEAVRIMT- 189
+ + +L++GEIV Q++ + R +VV MG+GEP +NYA ++ +R +
Sbjct: 123 LLKKQRDLTAGEIVAQIMWVQHYFDERGLDERVSHVVVMGIGEPFDNYANVMNFLRTIND 182
Query: 190 --GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPL 247
GL + + ITVST G+V I +F +NLA+SLHAP +VR IM R+FP+
Sbjct: 183 DKGLA--IGARHITVSTSGLVPKIREFADSGLQVNLAISLHAPNNEVRTSIMRINRSFPI 240
Query: 248 EKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVV--VNLIPFNPIG 305
EKLM A+ EY + + +++ EYIML VND +HA QL LL + + VNLIP+NP+
Sbjct: 241 EKLMAAIDEYIQKTNRRVTFEYIMLSQVNDRPEHAQQLADLLRNKKKLSYVNLIPYNPVS 300
Query: 306 SVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 350
Q+ SS + V F +L+ + I +RK+ G DI ACGQL
Sbjct: 301 EHDQYSRSSKEAVLKFYDVLKKN-GINCVIRKEHGTDIDAACGQL 344
>gi|428767395|ref|YP_007153506.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecalis str. Symbioflor 1]
gi|427185568|emb|CCO72792.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecalis str. Symbioflor 1]
Length = 357
Score = 204 bits (520), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 120/345 (34%), Positives = 186/345 (53%), Gaps = 30/345 (8%)
Query: 18 FEKAGIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHSVVDSSDD 77
F G K+ +W+++ + E ++ + +LL F L +V + D
Sbjct: 18 FLAHGEKKFRATQVWEWLYTKRVASFSEMSNISKSLMTLLEENF-SLNPLKQVIVQEAQD 76
Query: 78 VTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATG 137
T K L +L + +E V+MR + L ++C+++QVGC +GC FCA+G
Sbjct: 77 GTVKYLFELPDKNMIETVLMRQEYGL--------------SVCVTTQVGCNIGCTFCASG 122
Query: 138 TMGFKSNLSSGEIVEQLVHASRLSNIR-------NVVFMGMGEPLNNYAALVEAVRIMT- 189
+ + +L++GEIV Q++ + R +VV MG+GEP +NYA ++ +R +
Sbjct: 123 LLKKQKDLTAGEIVAQIMWVQHYFDERGLDERVSHVVVMGIGEPFDNYANVMNFLRTIND 182
Query: 190 --GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPL 247
GL + + ITVST G+V I +F +NLA+SLHAP +VR IM R+FP+
Sbjct: 183 DKGLA--IGARHITVSTSGLVPKIREFADSGLQVNLAISLHAPNNEVRTSIMRINRSFPI 240
Query: 248 EKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVV--VNLIPFNPIG 305
EKLM A+ EY + + +++ EYIML VND +HA QL LL + + VNLIP+NP+
Sbjct: 241 EKLMAAIDEYIEKTNRRVTFEYIMLSQVNDRPEHAQQLADLLRNKKKLSYVNLIPYNPVS 300
Query: 306 SVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 350
Q+ SS + V F +L+ + I +RK+ G DI ACGQL
Sbjct: 301 EHDQYSRSSKEAVLKFYDVLKKN-GINCVIRKEHGTDIDAACGQL 344
>gi|54297459|ref|YP_123828.1| hypothetical protein lpp1504 [Legionella pneumophila str. Paris]
gi|81370554|sp|Q5X516.1|RLMN_LEGPA RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|53751244|emb|CAH12655.1| hypothetical protein lpp1504 [Legionella pneumophila str. Paris]
Length = 382
Score = 204 bits (520), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 121/296 (40%), Positives = 174/296 (58%), Gaps = 28/296 (9%)
Query: 75 SDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFC 134
S D T K L+KL+ G +E V + P R TLC+SSQVGC + C+FC
Sbjct: 76 SADGTHKWLLKLECGNCIETVFI--------------PEANRGTLCVSSQVGCALNCSFC 121
Query: 135 ATGTMGFKSNLSSGEIVEQLVHASR-LSN--------IRNVVFMGMGEPLNNYAALVEAV 185
+T GF NLS+ EI+ Q+ A+R LS+ I NVV MGMGEPL N+ +V A+
Sbjct: 122 STAKQGFNRNLSTAEIIGQVWLAARELSDNNGTHDKKITNVVMMGMGEPLLNFDNVVSAM 181
Query: 186 RIMT-GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARA 244
IM L + +S +R+T+ST G++ + + P + LAVSLHAP ++R +++P +
Sbjct: 182 NIMMDDLAYGLSKRRVTLSTSGVLPEMERLREVSP-VALAVSLHAPTDELRNELVPINKK 240
Query: 245 FPLEKLMNALKEYQKNS-QQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNP 303
+PL +L++ K Y K+ ++K+ EY+ML GVND+ +HA QL KLL VNLIPFNP
Sbjct: 241 YPLSQLISLCKRYFKDEPRRKVTFEYVMLKGVNDQPEHASQLIKLLHNVPAKVNLIPFNP 300
Query: 304 IGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDKIS 359
++Q++ SS + + +F+ L + I T RK G DI ACGQL + DK S
Sbjct: 301 F-PLTQYQRSSRETIDAFRDKLM-KHGINTITRKTRGDDIDAACGQLAGEVKDKTS 354
>gi|337279529|ref|YP_004619001.1| hypothetical protein Rta_18910 [Ramlibacter tataouinensis TTB310]
gi|334730606|gb|AEG92982.1| conserved hypothetical protein [Ramlibacter tataouinensis TTB310]
Length = 385
Score = 204 bits (520), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 140/368 (38%), Positives = 192/368 (52%), Gaps = 40/368 (10%)
Query: 9 FDGGIIRAEFEKAGIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTL 68
FD + A E G K+ +++++ + E+D+ L + LR K K
Sbjct: 9 FDLDGLAAFCETLGEKRFRATQLFRWIHQRGCAEFDQMSDLAKS----LREKLKYAARVQ 64
Query: 69 HSVV---DSSDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQV 125
+ S D T K L + G VEAV + P R TLC+SSQ
Sbjct: 65 GLAIITQHESADGTIKWLFDVGQGNAVEAVFI--------------PEDDRGTLCVSSQA 110
Query: 126 GCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN---------IRNVVFMGMGEPLN 176
GC +GC FC+TG GF NLS+GEIV QL A I NVV MGMGEPL
Sbjct: 111 GCAVGCRFCSTGHQGFARNLSTGEIVAQLWFAEHYLRRHLGTSERVISNVVMMGMGEPLQ 170
Query: 177 NYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVR 235
NY+ALV A+R M + +S +R+TVST G+V I++ D P + LAVSLHAP ++R
Sbjct: 171 NYSALVPALRTMLDDHGYGLSRRRVTVSTSGVVPMIDRLGQDCP-VALAVSLHAPNDELR 229
Query: 236 CQIMPAARAFPLEKLMNALKEYQKNSQQK-IFIEYIMLDGVNDEEQHAHQLGKLL----- 289
++P R +PL +L++A Y +++ + I EY MLDGVND+ +HA QL +L+
Sbjct: 230 DHLVPLNRKYPLAELLDACNRYLEHAPRDFITFEYCMLDGVNDQPEHAQQLIELVRGHAG 289
Query: 290 ETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQ 349
+NLIPFNP S S + VS+F + L + I TTVRK G DI ACGQ
Sbjct: 290 RGVSCKLNLIPFNPFPQ-SGLTRSPNKAVSAFAEKLINA-GIVTTVRKTRGDDIDAACGQ 347
Query: 350 LVVNLPDK 357
L ++ D+
Sbjct: 348 LAGDVRDR 355
>gi|52841777|ref|YP_095576.1| radical SAM protein [Legionella pneumophila subsp. pneumophila str.
Philadelphia 1]
gi|378777412|ref|YP_005185849.1| radical SAM enzyme, Cfr family [Legionella pneumophila subsp.
pneumophila ATCC 43290]
gi|52628888|gb|AAU27629.1| radical SAM enzyme, Cfr family [Legionella pneumophila subsp.
pneumophila str. Philadelphia 1]
gi|364508226|gb|AEW51750.1| radical SAM enzyme, Cfr family [Legionella pneumophila subsp.
pneumophila ATCC 43290]
Length = 386
Score = 204 bits (520), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 121/296 (40%), Positives = 174/296 (58%), Gaps = 28/296 (9%)
Query: 75 SDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFC 134
S D T K L+KL+ G +E V + P R TLC+SSQVGC + C+FC
Sbjct: 80 SADGTHKWLLKLECGNCIETVFI--------------PEANRGTLCVSSQVGCALNCSFC 125
Query: 135 ATGTMGFKSNLSSGEIVEQLVHASR-LSN--------IRNVVFMGMGEPLNNYAALVEAV 185
+T GF NLS+ EI+ Q+ A+R LS+ I NVV MGMGEPL N+ +V A+
Sbjct: 126 STAKQGFNRNLSTAEIIGQVWLAARELSDNNGTHDKKITNVVMMGMGEPLLNFDNVVSAM 185
Query: 186 RIMT-GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARA 244
IM L + +S +R+T+ST G++ + + P + LAVSLHAP ++R +++P +
Sbjct: 186 NIMMDDLAYGLSKRRVTLSTSGVLPEMERLREVSP-VALAVSLHAPTDELRNELVPINKK 244
Query: 245 FPLEKLMNALKEYQKNS-QQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNP 303
+PL +L++ K Y K+ ++K+ EY+ML GVND+ +HA QL KLL VNLIPFNP
Sbjct: 245 YPLSQLISLCKRYFKDEPRRKVTFEYVMLKGVNDQPEHASQLIKLLHNVPAKVNLIPFNP 304
Query: 304 IGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDKIS 359
++Q++ SS + + +F+ L + I T RK G DI ACGQL + DK S
Sbjct: 305 F-PLTQYQRSSRETIDAFRDKLM-KHGINTITRKTRGDDIDAACGQLAGEVKDKTS 358
>gi|336417780|ref|ZP_08598065.1| radical SAM enzyme, Cfr family [Fusobacterium sp. 11_3_2]
gi|336164727|gb|EGN67629.1| radical SAM enzyme, Cfr family [Fusobacterium sp. 11_3_2]
Length = 358
Score = 204 bits (520), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 120/336 (35%), Positives = 185/336 (55%), Gaps = 17/336 (5%)
Query: 22 GIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSK-FKPLTSTLHSVVDSSDDVTT 80
G+K+ + ++ ++ + +DE +L +L+ K + P + L + S D T
Sbjct: 24 GLKKFYGKEVFIWLHKKITRSFDEMTNLSLKDREILKEKTYIPFFNLLKHQI-SKIDRTE 82
Query: 81 KLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMG 140
K L +L++ G +E V++R+ S K R+TLC+SSQVGC + C+FCATG G
Sbjct: 83 KFLFELEDKGTIETVLLRHKDSKNK--------EIRNTLCVSSQVGCPVKCSFCATGQSG 134
Query: 141 FKSNLSSGEIVEQLVHASRL-----SNIRNVVFMGMGEPLNNYAALVEAVRIMTGLP-FQ 194
+ NLS EI+ Q+ R + N+VFMGMGEPL N L +++ I++
Sbjct: 135 YMRNLSVSEILNQIYTIERRLRKKGETLNNLVFMGMGEPLLNIDNLAKSLSIISNENGIN 194
Query: 195 VSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNAL 254
+S ++IT+ST G+V I K D + LA+SLH+ + + R +I+P + FPLE L L
Sbjct: 195 ISKRKITISTSGVVSGIEKILLDKIPIELAISLHSAINEKRDKIIPLNKNFPLEDLSAVL 254
Query: 255 KEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSS 314
EYQK ++++I EYI++D N E A+ L + F VVNLIP+N + V R S
Sbjct: 255 IEYQKQTKRRITFEYILIDNFNISETDANALADFVHQFDHVVNLIPYNEVEGVEHTRPSV 314
Query: 315 DDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 350
K+ F L+ + T+R++ G DI GACGQL
Sbjct: 315 -KKIDKFYNYLKNVRKVNVTLRQEKGSDIDGACGQL 349
>gi|138894695|ref|YP_001125148.1| ribosomal RNA large subunit methyltransferase N [Geobacillus
thermodenitrificans NG80-2]
gi|205829768|sp|A4IM49.1|RLMN_GEOTN RecName: Full=Probable dual-specificity RNA methyltransferase RlmN;
AltName: Full=23S rRNA
(adenine(2503)-C(2))-methyltransferase; AltName:
Full=23S rRNA m2A2503 methyltransferase; AltName:
Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=tRNA (adenine(37)-C(2))-methyltransferase;
AltName: Full=tRNA m2A37 methyltransferase
gi|134266208|gb|ABO66403.1| Radical SAM family enzyme [Geobacillus thermodenitrificans NG80-2]
Length = 364
Score = 204 bits (520), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 112/327 (34%), Positives = 190/327 (58%), Gaps = 25/327 (7%)
Query: 31 IWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHSVV-DSSDDVTTKLLVKLQNG 89
I++++ ++ E +LP L S F +TL ++V +S D T K L +L +G
Sbjct: 46 IYEWLYGKRVTDFAEMTNLPKRLREQLASAFS--ITTLKTIVKQTSKDGTIKFLFELHDG 103
Query: 90 GFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGE 149
+E V+MR++ +++C+++QVGC++GC FCA+ G K +L +GE
Sbjct: 104 YSIETVLMRHNYG--------------NSVCVTTQVGCRIGCTFCASTLGGLKRHLEAGE 149
Query: 150 IVEQLVHASRL-----SNIRNVVFMGMGEPLNNYAALVEAVRIMT-GLPFQVSPKRITVS 203
IV Q+V + + ++V MG+GEP +NY AL++ +RI+ + + ITVS
Sbjct: 150 IVAQVVQVQKALDETEERVSSIVVMGIGEPFDNYDALIKFLRIVNHSKGLNIGARHITVS 209
Query: 204 TVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQ 263
T GI+ I +F + +N A+SLHAP ++R ++MP +A+PL KLM A++ Y + + +
Sbjct: 210 TSGIIPKIYQFADEGMQINFAISLHAPTTELRTKLMPINKAYPLPKLMEAVRYYIEKTGR 269
Query: 264 KIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQK 323
++ EY + GVND+ +HA QL +LL+ + VNLIP N + + RT +++ +F++
Sbjct: 270 RVTFEYGLFGGVNDQLEHAEQLAELLKGLKCHVNLIPVNYVPERNYVRTPR-NQIFAFER 328
Query: 324 ILRGSYNIRTTVRKQMGQDISGACGQL 350
L+ + I T+R++ G DI ACGQL
Sbjct: 329 ALK-KHGINVTIRREHGHDIDAACGQL 354
>gi|397663988|ref|YP_006505526.1| putative Fe-S containing enzyme [Legionella pneumophila subsp.
pneumophila]
gi|395127399|emb|CCD05591.1| putative Fe-S containing enzyme [Legionella pneumophila subsp.
pneumophila]
Length = 382
Score = 204 bits (520), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 121/296 (40%), Positives = 174/296 (58%), Gaps = 28/296 (9%)
Query: 75 SDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFC 134
S D T K L+KL+ G +E V + P R TLC+SSQVGC + C+FC
Sbjct: 76 SADGTHKWLLKLECGNCIETVFI--------------PEANRGTLCVSSQVGCALNCSFC 121
Query: 135 ATGTMGFKSNLSSGEIVEQLVHASR-LSN--------IRNVVFMGMGEPLNNYAALVEAV 185
+T GF NLS+ EI+ Q+ A+R LS+ I NVV MGMGEPL N+ +V A+
Sbjct: 122 STAKQGFNRNLSTAEIIGQVWLAARELSDNNGTHDKKITNVVMMGMGEPLLNFDNVVSAM 181
Query: 186 RIMT-GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARA 244
IM L + +S +R+T+ST G++ + + P + LAVSLHAP ++R +++P +
Sbjct: 182 NIMMDDLAYGLSKRRVTLSTSGVLPEMERLREVSP-VALAVSLHAPTDELRNELVPINKK 240
Query: 245 FPLEKLMNALKEYQKNS-QQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNP 303
+PL +L++ K Y K+ ++K+ EY+ML GVND+ +HA QL KLL VNLIPFNP
Sbjct: 241 YPLSQLISLCKRYFKDEPRRKVTFEYVMLKGVNDQPEHASQLIKLLHNVPAKVNLIPFNP 300
Query: 304 IGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDKIS 359
++Q++ SS + + +F+ L + I T RK G DI ACGQL + DK S
Sbjct: 301 F-PLTQYQRSSRETIDAFRDKLM-KHGINTITRKTRGDDIDAACGQLAGEVKDKTS 354
>gi|29376559|ref|NP_815713.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecalis V583]
gi|227520169|ref|ZP_03950218.1| Fe-S-cluster redox enzyme [Enterococcus faecalis TX0104]
gi|227555397|ref|ZP_03985444.1| Fe-S-cluster redox enzyme [Enterococcus faecalis HH22]
gi|229549611|ref|ZP_04438336.1| Fe-S-cluster redox enzyme [Enterococcus faecalis ATCC 29200]
gi|255972309|ref|ZP_05422895.1| conserved hypothetical protein [Enterococcus faecalis T1]
gi|255975469|ref|ZP_05426055.1| conserved hypothetical protein [Enterococcus faecalis T2]
gi|256956502|ref|ZP_05560673.1| conserved hypothetical protein [Enterococcus faecalis DS5]
gi|256961519|ref|ZP_05565690.1| conserved hypothetical protein [Enterococcus faecalis Merz96]
gi|256962655|ref|ZP_05566826.1| conserved hypothetical protein [Enterococcus faecalis HIP11704]
gi|257079424|ref|ZP_05573785.1| 23S rRNA methyltransferase [Enterococcus faecalis JH1]
gi|257082189|ref|ZP_05576550.1| conserved hypothetical protein [Enterococcus faecalis E1Sol]
gi|257090325|ref|ZP_05584686.1| conserved hypothetical protein [Enterococcus faecalis CH188]
gi|257416428|ref|ZP_05593422.1| conserved hypothetical protein [Enterococcus faecalis ARO1/DG]
gi|257419673|ref|ZP_05596667.1| conserved hypothetical protein [Enterococcus faecalis T11]
gi|293382216|ref|ZP_06628158.1| radical SAM enzyme, Cfr family [Enterococcus faecalis R712]
gi|293388635|ref|ZP_06633131.1| radical SAM enzyme, Cfr family [Enterococcus faecalis S613]
gi|294780328|ref|ZP_06745697.1| radical SAM enzyme, Cfr family [Enterococcus faecalis PC1.1]
gi|300860541|ref|ZP_07106628.1| 23S rRNA m2A2503 methyltransferase [Enterococcus faecalis TUSoD
Ef11]
gi|307270284|ref|ZP_07551592.1| radical SAM enzyme, Cfr family [Enterococcus faecalis TX4248]
gi|307277716|ref|ZP_07558802.1| radical SAM enzyme, Cfr family [Enterococcus faecalis TX0860]
gi|307287862|ref|ZP_07567895.1| radical SAM enzyme, Cfr family [Enterococcus faecalis TX0109]
gi|312900861|ref|ZP_07760155.1| radical SAM enzyme, Cfr family [Enterococcus faecalis TX0470]
gi|312902828|ref|ZP_07762032.1| radical SAM enzyme, Cfr family [Enterococcus faecalis TX0635]
gi|312908292|ref|ZP_07767256.1| radical SAM enzyme, Cfr family [Enterococcus faecalis DAPTO 512]
gi|312951214|ref|ZP_07770116.1| radical SAM enzyme, Cfr family [Enterococcus faecalis TX0102]
gi|384513619|ref|YP_005708712.1| cfr family radical SAM enzyme [Enterococcus faecalis OG1RF]
gi|397700280|ref|YP_006538068.1| radical SAM superfamily protein [Enterococcus faecalis D32]
gi|422690387|ref|ZP_16748444.1| radical SAM enzyme, Cfr family [Enterococcus faecalis TX0630]
gi|422692673|ref|ZP_16750688.1| radical SAM enzyme, Cfr family [Enterococcus faecalis TX0031]
gi|422698247|ref|ZP_16756164.1| radical SAM enzyme, Cfr family [Enterococcus faecalis TX1346]
gi|422699915|ref|ZP_16757774.1| radical SAM enzyme, Cfr family [Enterococcus faecalis TX1342]
gi|422703829|ref|ZP_16761646.1| radical SAM enzyme, Cfr family [Enterococcus faecalis TX1302]
gi|422711497|ref|ZP_16768426.1| radical SAM enzyme, Cfr family [Enterococcus faecalis TX0027]
gi|422712438|ref|ZP_16769206.1| radical SAM enzyme, Cfr family [Enterococcus faecalis TX0309A]
gi|422716518|ref|ZP_16773221.1| radical SAM enzyme, Cfr family [Enterococcus faecalis TX0309B]
gi|422721720|ref|ZP_16778303.1| radical SAM enzyme, Cfr family [Enterococcus faecalis TX0017]
gi|422725572|ref|ZP_16782031.1| radical SAM enzyme, Cfr family [Enterococcus faecalis TX0312]
gi|422730261|ref|ZP_16786654.1| radical SAM enzyme, Cfr family [Enterococcus faecalis TX0012]
gi|422735692|ref|ZP_16791958.1| radical SAM enzyme, Cfr family [Enterococcus faecalis TX1341]
gi|422741919|ref|ZP_16795941.1| radical SAM enzyme, Cfr family [Enterococcus faecalis TX2141]
gi|422870146|ref|ZP_16916644.1| 23S rRNA m2A2503 methyltransferase [Enterococcus faecalis TX1467]
gi|424678319|ref|ZP_18115159.1| 23S rRNA methyltransferase [Enterococcus faecalis ERV103]
gi|424682177|ref|ZP_18118954.1| 23S rRNA methyltransferase [Enterococcus faecalis ERV116]
gi|424685441|ref|ZP_18122139.1| 23S rRNA methyltransferase [Enterococcus faecalis ERV129]
gi|424688165|ref|ZP_18124781.1| 23S rRNA methyltransferase [Enterococcus faecalis ERV25]
gi|424691070|ref|ZP_18127597.1| 23S rRNA methyltransferase [Enterococcus faecalis ERV31]
gi|424694529|ref|ZP_18130927.1| 23S rRNA methyltransferase [Enterococcus faecalis ERV37]
gi|424696447|ref|ZP_18132796.1| 23S rRNA methyltransferase [Enterococcus faecalis ERV41]
gi|424702048|ref|ZP_18138211.1| 23S rRNA methyltransferase [Enterococcus faecalis ERV62]
gi|424704270|ref|ZP_18140372.1| 23S rRNA methyltransferase [Enterococcus faecalis ERV63]
gi|424712736|ref|ZP_18144905.1| 23S rRNA methyltransferase [Enterococcus faecalis ERV65]
gi|424718764|ref|ZP_18147993.1| 23S rRNA m2A2503 methyltransferase [Enterococcus faecalis ERV68]
gi|424722240|ref|ZP_18151304.1| 23S rRNA methyltransferase [Enterococcus faecalis ERV72]
gi|424722985|ref|ZP_18152005.1| 23S rRNA methyltransferase [Enterococcus faecalis ERV73]
gi|424728331|ref|ZP_18156938.1| 23S rRNA methyltransferase [Enterococcus faecalis ERV81]
gi|424740535|ref|ZP_18168917.1| 23S rRNA methyltransferase [Enterococcus faecalis ERV85]
gi|424749892|ref|ZP_18177969.1| 23S rRNA methyltransferase [Enterococcus faecalis ERV93]
gi|424759355|ref|ZP_18187021.1| 23S rRNA methyltransferase [Enterococcus faecalis R508]
gi|430360809|ref|ZP_19426467.1| Fe-S-cluster redox enzyme [Enterococcus faecalis OG1X]
gi|430367269|ref|ZP_19427832.1| Fe-S-cluster redox enzyme [Enterococcus faecalis M7]
gi|81585123|sp|Q833B6.1|RLMN_ENTFA RecName: Full=Probable dual-specificity RNA methyltransferase RlmN;
AltName: Full=23S rRNA
(adenine(2503)-C(2))-methyltransferase; AltName:
Full=23S rRNA m2A2503 methyltransferase; AltName:
Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=tRNA (adenine(37)-C(2))-methyltransferase;
AltName: Full=tRNA m2A37 methyltransferase
gi|29344023|gb|AAO81783.1| conserved hypothetical protein TIGR00048 [Enterococcus faecalis
V583]
gi|227072382|gb|EEI10345.1| Fe-S-cluster redox enzyme [Enterococcus faecalis TX0104]
gi|227175440|gb|EEI56412.1| Fe-S-cluster redox enzyme [Enterococcus faecalis HH22]
gi|229305276|gb|EEN71272.1| Fe-S-cluster redox enzyme [Enterococcus faecalis ATCC 29200]
gi|255963327|gb|EET95803.1| conserved hypothetical protein [Enterococcus faecalis T1]
gi|255968341|gb|EET98963.1| conserved hypothetical protein [Enterococcus faecalis T2]
gi|256946998|gb|EEU63630.1| conserved hypothetical protein [Enterococcus faecalis DS5]
gi|256952015|gb|EEU68647.1| conserved hypothetical protein [Enterococcus faecalis Merz96]
gi|256953151|gb|EEU69783.1| conserved hypothetical protein [Enterococcus faecalis HIP11704]
gi|256987454|gb|EEU74756.1| 23S rRNA methyltransferase [Enterococcus faecalis JH1]
gi|256990219|gb|EEU77521.1| conserved hypothetical protein [Enterococcus faecalis E1Sol]
gi|256999137|gb|EEU85657.1| conserved hypothetical protein [Enterococcus faecalis CH188]
gi|257158256|gb|EEU88216.1| conserved hypothetical protein [Enterococcus faecalis ARO1/DG]
gi|257161501|gb|EEU91461.1| conserved hypothetical protein [Enterococcus faecalis T11]
gi|291080400|gb|EFE17764.1| radical SAM enzyme, Cfr family [Enterococcus faecalis R712]
gi|291082010|gb|EFE18973.1| radical SAM enzyme, Cfr family [Enterococcus faecalis S613]
gi|294452592|gb|EFG21025.1| radical SAM enzyme, Cfr family [Enterococcus faecalis PC1.1]
gi|300849580|gb|EFK77330.1| 23S rRNA m2A2503 methyltransferase [Enterococcus faecalis TUSoD
Ef11]
gi|306501007|gb|EFM70314.1| radical SAM enzyme, Cfr family [Enterococcus faecalis TX0109]
gi|306505595|gb|EFM74779.1| radical SAM enzyme, Cfr family [Enterococcus faecalis TX0860]
gi|306513338|gb|EFM81962.1| radical SAM enzyme, Cfr family [Enterococcus faecalis TX4248]
gi|310625706|gb|EFQ08989.1| radical SAM enzyme, Cfr family [Enterococcus faecalis DAPTO 512]
gi|310630748|gb|EFQ14031.1| radical SAM enzyme, Cfr family [Enterococcus faecalis TX0102]
gi|310633882|gb|EFQ17165.1| radical SAM enzyme, Cfr family [Enterococcus faecalis TX0635]
gi|311291960|gb|EFQ70516.1| radical SAM enzyme, Cfr family [Enterococcus faecalis TX0470]
gi|315031044|gb|EFT42976.1| radical SAM enzyme, Cfr family [Enterococcus faecalis TX0017]
gi|315034600|gb|EFT46532.1| radical SAM enzyme, Cfr family [Enterococcus faecalis TX0027]
gi|315143477|gb|EFT87493.1| radical SAM enzyme, Cfr family [Enterococcus faecalis TX2141]
gi|315149242|gb|EFT93258.1| radical SAM enzyme, Cfr family [Enterococcus faecalis TX0012]
gi|315152618|gb|EFT96634.1| radical SAM enzyme, Cfr family [Enterococcus faecalis TX0031]
gi|315159454|gb|EFU03471.1| radical SAM enzyme, Cfr family [Enterococcus faecalis TX0312]
gi|315164747|gb|EFU08764.1| radical SAM enzyme, Cfr family [Enterococcus faecalis TX1302]
gi|315167578|gb|EFU11595.1| radical SAM enzyme, Cfr family [Enterococcus faecalis TX1341]
gi|315171638|gb|EFU15655.1| radical SAM enzyme, Cfr family [Enterococcus faecalis TX1342]
gi|315173222|gb|EFU17239.1| radical SAM enzyme, Cfr family [Enterococcus faecalis TX1346]
gi|315575041|gb|EFU87232.1| radical SAM enzyme, Cfr family [Enterococcus faecalis TX0309B]
gi|315576758|gb|EFU88949.1| radical SAM enzyme, Cfr family [Enterococcus faecalis TX0630]
gi|315582467|gb|EFU94658.1| radical SAM enzyme, Cfr family [Enterococcus faecalis TX0309A]
gi|327535508|gb|AEA94342.1| cfr family radical SAM enzyme [Enterococcus faecalis OG1RF]
gi|329568816|gb|EGG50616.1| 23S rRNA m2A2503 methyltransferase [Enterococcus faecalis TX1467]
gi|397336919|gb|AFO44591.1| radical SAM superfamily protein [Enterococcus faecalis D32]
gi|402349548|gb|EJU84492.1| 23S rRNA methyltransferase [Enterococcus faecalis ERV116]
gi|402351647|gb|EJU86527.1| 23S rRNA methyltransferase [Enterococcus faecalis ERV103]
gi|402358791|gb|EJU93451.1| 23S rRNA methyltransferase [Enterococcus faecalis ERV129]
gi|402361557|gb|EJU96107.1| 23S rRNA methyltransferase [Enterococcus faecalis ERV25]
gi|402362914|gb|EJU97426.1| 23S rRNA methyltransferase [Enterococcus faecalis ERV31]
gi|402370167|gb|EJV04403.1| 23S rRNA methyltransferase [Enterococcus faecalis ERV62]
gi|402370459|gb|EJV04666.1| 23S rRNA methyltransferase [Enterococcus faecalis ERV37]
gi|402377833|gb|EJV11723.1| 23S rRNA methyltransferase [Enterococcus faecalis ERV41]
gi|402379734|gb|EJV13524.1| 23S rRNA methyltransferase [Enterococcus faecalis ERV65]
gi|402380305|gb|EJV14065.1| 23S rRNA m2A2503 methyltransferase [Enterococcus faecalis ERV68]
gi|402382359|gb|EJV16026.1| 23S rRNA methyltransferase [Enterococcus faecalis ERV63]
gi|402389425|gb|EJV22821.1| 23S rRNA methyltransferase [Enterococcus faecalis ERV72]
gi|402394135|gb|EJV27330.1| 23S rRNA methyltransferase [Enterococcus faecalis ERV81]
gi|402400392|gb|EJV33223.1| 23S rRNA methyltransferase [Enterococcus faecalis ERV73]
gi|402401956|gb|EJV34695.1| 23S rRNA methyltransferase [Enterococcus faecalis ERV85]
gi|402404813|gb|EJV37426.1| 23S rRNA methyltransferase [Enterococcus faecalis R508]
gi|402407461|gb|EJV39991.1| 23S rRNA methyltransferase [Enterococcus faecalis ERV93]
gi|429512746|gb|ELA02344.1| Fe-S-cluster redox enzyme [Enterococcus faecalis OG1X]
gi|429516742|gb|ELA06221.1| Fe-S-cluster redox enzyme [Enterococcus faecalis M7]
Length = 357
Score = 204 bits (520), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 120/345 (34%), Positives = 186/345 (53%), Gaps = 30/345 (8%)
Query: 18 FEKAGIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHSVVDSSDD 77
F G K+ +W+++ + E ++ + +LL F L +V + D
Sbjct: 18 FLAHGEKKFRATQVWEWLYTKRVASFSEMSNISKSLMTLLEENF-SLNPLKQVIVQEAQD 76
Query: 78 VTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATG 137
T K L +L + +E V+MR + L ++C+++QVGC +GC FCA+G
Sbjct: 77 GTVKYLFELPDKNMIETVLMRQEYGL--------------SVCVTTQVGCNIGCTFCASG 122
Query: 138 TMGFKSNLSSGEIVEQLVHASRLSNIR-------NVVFMGMGEPLNNYAALVEAVRIMT- 189
+ + +L++GEIV Q++ + R +VV MG+GEP +NYA ++ +R +
Sbjct: 123 LLKKQRDLTAGEIVAQIMWVQHYFDERGLDERVSHVVVMGIGEPFDNYANVMNFLRTIND 182
Query: 190 --GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPL 247
GL + + ITVST G+V I +F +NLA+SLHAP +VR IM R+FP+
Sbjct: 183 DKGLA--IGARHITVSTSGLVPKIREFADSGLQVNLAISLHAPNNEVRTSIMRINRSFPI 240
Query: 248 EKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVV--VNLIPFNPIG 305
EKLM A+ EY + + +++ EYIML VND +HA QL LL + + VNLIP+NP+
Sbjct: 241 EKLMAAIDEYIEKTNRRVTFEYIMLSQVNDRPEHAQQLADLLRNKKKLSYVNLIPYNPVS 300
Query: 306 SVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 350
Q+ SS + V F +L+ + I +RK+ G DI ACGQL
Sbjct: 301 EHDQYSRSSKEAVLKFYDVLKKN-GINCVIRKEHGTDIDAACGQL 344
>gi|149375014|ref|ZP_01892787.1| predicted Fe-S-cluster redox enzyme [Marinobacter algicola DG893]
gi|149360903|gb|EDM49354.1| predicted Fe-S-cluster redox enzyme [Marinobacter algicola DG893]
Length = 370
Score = 204 bits (520), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 125/359 (34%), Positives = 197/359 (54%), Gaps = 36/359 (10%)
Query: 14 IRAEFEKAGIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHSVV- 72
+ A FE G K+ + +++ + ++D+ ++ +LR K K + V
Sbjct: 18 MEAFFESLGEKRFRATQVLQWIHQRGADDFDQMTNM----SKVLREKLKAVAEIRGPEVV 73
Query: 73 --DSSDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMG 130
+SS D T K ++++ NG VE V++ P G R TLC+SSQ+GC +
Sbjct: 74 YDESSKDGTRKWVMRMDNGNSVETVLI--------------PDGERGTLCVSSQIGCSLD 119
Query: 131 CNFCATGTMGFKSNLSSGEIVEQLVHASRL---------SNIRNVVFMGMGEPLNNYAAL 181
C FC+TG GF NL++ EI+ Q+ A + I NVV MGMGEPL N+ +
Sbjct: 120 CTFCSTGKRGFNRNLTAAEIIGQVWVARKAFMPFEPGPDRPITNVVMMGMGEPLLNFDNV 179
Query: 182 VEAVRI-MTGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMP 240
V+A+ + M L + +S +R+TVST G+V A++K ++ ++LA+SLHAP ++R Q++P
Sbjct: 180 VDAMNLMMEDLAYGISKRRVTVSTSGVVPALDKL-GEVTDVSLAISLHAPNDELRNQLVP 238
Query: 241 AARAFPLEKLMNALKEYQKN--SQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNL 298
+ +P+ +L+ A + Y ++K IEY +++GVND+ +HA +L +L +NL
Sbjct: 239 LNKKYPIAELLAATRRYLARLPDKRKATIEYTVIEGVNDQPEHARELAVVLRGLPCKINL 298
Query: 299 IPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDK 357
IPFNP S FR S + FQ +L + I TVR G DI ACGQLV + D+
Sbjct: 299 IPFNPFPE-SDFRRPSMNATRRFQSVLNEAGYI-ATVRTTRGDDIDAACGQLVGMVEDR 355
>gi|323490277|ref|ZP_08095492.1| ribosomal RNA large subunit methyltransferase N [Planococcus
donghaensis MPA1U2]
gi|323395947|gb|EGA88778.1| ribosomal RNA large subunit methyltransferase N [Planococcus
donghaensis MPA1U2]
Length = 357
Score = 204 bits (520), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 115/347 (33%), Positives = 194/347 (55%), Gaps = 26/347 (7%)
Query: 14 IRAEFEKAGIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHSVVD 73
++ F + G K++ +W ++ E+ E +L LL F + + +V
Sbjct: 13 LKEWFLENGQKKYRAEQVWDWLYIKRVTEFAEMNNLSKECIQLLEDNF-AIRTLKETVKQ 71
Query: 74 SSDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNF 133
S D T K L ++Q+G +E V+MR+ KY +++C+++QVGC +GC+F
Sbjct: 72 ESADGTIKFLFQMQDGNLIETVLMRF-----KYG---------NSVCVTTQVGCNIGCSF 117
Query: 134 CATGTMGFKSNLSSGEIVEQLVHAS-------RLSNIRNVVFMGMGEPLNNYAALVEAVR 186
CA+G + +L++GEIVEQ++ + + ++V MG+GEP +NY L++ ++
Sbjct: 118 CASGLLKKSRDLNAGEIVEQIMQVQAHFDTQQKEERVSHIVVMGIGEPFDNYTNLMDFLK 177
Query: 187 IMTGLP-FQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAF 245
++ + + ITVST GIV I + + +NLA+S+HAP ++R +IM +A+
Sbjct: 178 VVNSQKGLAIGARHITVSTSGIVPKIYDYADEGLQVNLAISIHAPTNELRTRIMKINKAY 237
Query: 246 PLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVV--VNLIPFNP 303
P+EKLM ++ Y + S ++I EYI+L VND + A+QL KLLE + + VNLIP+N
Sbjct: 238 PIEKLMASIDYYLEKSNRRITFEYILLRDVNDHVEEANQLAKLLEDKRHLSYVNLIPYNS 297
Query: 304 IGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 350
+ Q++ S+ + +S+F L+ I VR + G DI ACGQL
Sbjct: 298 VDEHDQYQQSTPEAISAFYDALKKK-GINCGVRHEQGADIDAACGQL 343
>gi|148270145|ref|YP_001244605.1| ribosomal RNA large subunit methyltransferase N [Thermotoga
petrophila RKU-1]
gi|281412513|ref|YP_003346592.1| radical SAM enzyme, Cfr family [Thermotoga naphthophila RKU-10]
gi|205829917|sp|A5ILF6.1|RLMN_THEP1 RecName: Full=Probable dual-specificity RNA methyltransferase RlmN;
AltName: Full=23S rRNA
(adenine(2503)-C(2))-methyltransferase; AltName:
Full=23S rRNA m2A2503 methyltransferase; AltName:
Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=tRNA (adenine(37)-C(2))-methyltransferase;
AltName: Full=tRNA m2A37 methyltransferase
gi|147735689|gb|ABQ47029.1| radical SAM enzyme, Cfr family [Thermotoga petrophila RKU-1]
gi|281373616|gb|ADA67178.1| radical SAM enzyme, Cfr family [Thermotoga naphthophila RKU-10]
Length = 343
Score = 204 bits (520), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 120/339 (35%), Positives = 190/339 (56%), Gaps = 22/339 (6%)
Query: 16 AEFEKAGIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKFK-PLTSTLHSVVDS 74
E G++++ I ++ +DE +L +LL+ F P L V S
Sbjct: 14 TEITNLGLERYRADQILDWIFNKKVNNFDEMTNLSKKHRALLKEHFSIPFLKLLDKKV-S 72
Query: 75 SDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFC 134
D TTK L +L++G +E+V++ + R T CIS+QVGC + C FC
Sbjct: 73 RIDGTTKFLWELEDGNTIESVMLFHPD--------------RITACISTQVGCPVKCIFC 118
Query: 135 ATGTMGFKSNLSSGEIVEQLVHASR--LSNIRNVVFMGMGEPLNNYAALVEAVRIMTGLP 192
ATG GF NL++GEIV Q++ + I NVV+MGMGEPL NY ++++R +
Sbjct: 119 ATGMSGFVRNLTTGEIVAQILSMEKEEKKKIGNVVYMGMGEPLLNYENTIKSIRTLNHKK 178
Query: 193 F-QVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLM 251
+ +RIT+STVGI I + + + LA+SLHAP R Q++P + + +E+++
Sbjct: 179 MGNIGIRRITISTVGIPDRIIQLAEEGLDVKLALSLHAPTNFKRDQLVPLNKKYSIEEIL 238
Query: 252 NALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFR 311
NA+K YQK + ++ IEY+++ G+NDE A +L ++L+ +V VNLIP NP +V +
Sbjct: 239 NAVKIYQKKTGNRVTIEYVLIKGMNDEISDAKKLAEILKNMKVFVNLIPVNP--TVEDLK 296
Query: 312 TSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 350
S +++ +F++IL S I +R++ G DI ACGQL
Sbjct: 297 KPSRERLLTFKRILLES-GIEAEIRREKGADIEAACGQL 334
>gi|196247685|ref|ZP_03146387.1| radical SAM enzyme, Cfr family [Geobacillus sp. G11MC16]
gi|196212469|gb|EDY07226.1| radical SAM enzyme, Cfr family [Geobacillus sp. G11MC16]
Length = 366
Score = 204 bits (520), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 112/327 (34%), Positives = 190/327 (58%), Gaps = 25/327 (7%)
Query: 31 IWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHSVV-DSSDDVTTKLLVKLQNG 89
I++++ ++ E +LP L S F +TL ++V +S D T K L +L +G
Sbjct: 48 IYEWLYGKRVTDFAEMTNLPKRLREQLASAFS--ITTLKTIVKQTSKDGTIKFLFELHDG 105
Query: 90 GFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGE 149
+E V+MR++ +++C+++QVGC++GC FCA+ G K +L +GE
Sbjct: 106 YSIETVLMRHNYG--------------NSVCVTTQVGCRIGCTFCASTLGGLKRHLEAGE 151
Query: 150 IVEQLVHASRL-----SNIRNVVFMGMGEPLNNYAALVEAVRIMT-GLPFQVSPKRITVS 203
IV Q+V + + ++V MG+GEP +NY AL++ +RI+ + + ITVS
Sbjct: 152 IVAQVVQVQKALDETEERVSSIVVMGIGEPFDNYDALIKFLRIVNHSKGLNIGARHITVS 211
Query: 204 TVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQ 263
T GI+ I +F + +N A+SLHAP ++R ++MP +A+PL KLM A++ Y + + +
Sbjct: 212 TSGIIPKIYQFADEGMQINFAISLHAPTTELRTKLMPINKAYPLPKLMEAVRYYIEKTGR 271
Query: 264 KIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQK 323
++ EY + GVND+ +HA QL +LL+ + VNLIP N + + RT +++ +F++
Sbjct: 272 RVTFEYGLFGGVNDQLEHAEQLAELLKGLKCHVNLIPVNYVPERNYVRTPR-NQIFAFER 330
Query: 324 ILRGSYNIRTTVRKQMGQDISGACGQL 350
L+ + I T+R++ G DI ACGQL
Sbjct: 331 ALK-KHGINVTIRREHGHDIDAACGQL 356
>gi|390946616|ref|YP_006410376.1| 23S rRNA m(2)A-2503 methyltransferase [Alistipes finegoldii DSM
17242]
gi|390423185|gb|AFL77691.1| 23S rRNA m(2)A-2503 methyltransferase [Alistipes finegoldii DSM
17242]
Length = 368
Score = 204 bits (520), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 115/322 (35%), Positives = 178/322 (55%), Gaps = 25/322 (7%)
Query: 32 WKYV--IENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHSVVDSSDDVTTKLLVKLQNG 89
W Y +E+P + +A + L +F+P + + +S+D T K L + Q G
Sbjct: 60 WLYAKHVEDPM----RMSDIAAAHRAKLAERFRPAFTPPARITESADG-TKKYLYRTQQG 114
Query: 90 GFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGE 149
++E+ + P G R+TLC+SSQ GC+MGC FCATG G + +L++ E
Sbjct: 115 AWIESAYI--------------PDGERATLCVSSQAGCRMGCKFCATGRQGLQHSLTAPE 160
Query: 150 IVEQLVHASRLSNIRNVVFMGMGEPLNNYAALVEAVRIMTG-LPFQVSPKRITVSTVGIV 208
I+ Q+V ++ NVVFMGMGEPL+N ++ A+ IMT F SP RIT+ST G+
Sbjct: 161 ILNQIVSLPERDSLTNVVFMGMGEPLDNTDNVLRALEIMTSEWGFGWSPTRITLSTAGVA 220
Query: 209 HAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIE 268
+ +F D ++LAVSLH P + R IMP RA+P+ ++ L+ Y Q+++ E
Sbjct: 221 PELQRF-LDATKVHLAVSLHNPFHEERAAIMPVERAWPIAEVAAILRRYDFTHQRRVSFE 279
Query: 269 YIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGS 328
YI++ G+ND +H +L +LL+ + +NLI F+ I F + D+ + F+ L
Sbjct: 280 YIVMSGLNDSPRHIRELCRLLDGIKCRINLIRFHKIPGSPYF-SPDDEAMIRFRDTLTAK 338
Query: 329 YNIRTTVRKQMGQDISGACGQL 350
I+TT+R G+DI ACG L
Sbjct: 339 -GIQTTIRASRGEDIQAACGLL 359
>gi|386714229|ref|YP_006180552.1| 23S rRNA (adenine-C2)-methyltransferase RlmN [Halobacillus
halophilus DSM 2266]
gi|384073785|emb|CCG45278.1| 23S rRNA (adenine-C2)-methyltransferase RlmN [Halobacillus
halophilus DSM 2266]
Length = 361
Score = 204 bits (520), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 119/351 (33%), Positives = 194/351 (55%), Gaps = 29/351 (8%)
Query: 22 GIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHSVVDSSDDVTTK 81
G K+ IW ++ + ++ + ++ + LL+ F T T + S D T K
Sbjct: 21 GEKKFRAKQIWNWLYQKRITDFSQMKNVNQSCIDLLQEHFTIETLT-EEIKQESQDGTVK 79
Query: 82 LLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGF 141
L KL +G +E V+MR++ L ++C+++QVGC +GC+FCA+G +
Sbjct: 80 FLFKLHDGNIIETVLMRFNYGL--------------SVCVTTQVGCNIGCSFCASGVLKK 125
Query: 142 KSNLSSGEIVEQLV----HASRLSN---IRNVVFMGMGEPLNNYAALVEAVRIMTGLP-F 193
+LS GEIVEQ++ H + N + ++V MG+GEP +NY L++ ++++
Sbjct: 126 NRDLSGGEIVEQIMQVQQHLDKQQNDERVSHIVVMGIGEPFDNYDNLIDFLKVVNDQKGL 185
Query: 194 QVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNA 253
+ + ITVST GI + +F + +NLA+S+HAP D+R QIM RA+PLEKLM A
Sbjct: 186 SIGARHITVSTSGIAPKMYEFADEGIQINLALSIHAPNNDLRTQIMKINRAYPLEKLMPA 245
Query: 254 LKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVV--VNLIPFNPIGSVSQFR 311
+ Y + + ++I EYI+L VND ++ A +L LL+ + + VNLIP+NP+ R
Sbjct: 246 IDYYLEKTNRRITFEYILLKDVNDHKKEAEELADLLQNKKHLSYVNLIPYNPVADNPYER 305
Query: 312 TSSDDKVSSFQKIL-RGSYNIRTTVRKQMGQDISGACGQLVVNLPDKISAK 361
+ + ++ +Q ++ RG IR VR + G DI ACGQL +K A+
Sbjct: 306 SEKESILTFYQTLMDRG---IRCGVRTEHGTDIDAACGQLRSKQIEKEKAR 353
>gi|386810868|ref|ZP_10098094.1| methyltransferase [planctomycete KSU-1]
gi|386405592|dbj|GAB60975.1| methyltransferase [planctomycete KSU-1]
Length = 352
Score = 204 bits (520), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 114/328 (34%), Positives = 188/328 (57%), Gaps = 28/328 (8%)
Query: 31 IWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHSVVDSSDDVTTKLLVKLQNGG 90
I ++ ++++ +LP L K + +T+ ++ + D T K LV+L +G
Sbjct: 34 ILSWIYNKGATDFNQMSNLPKDLRRKLAEKCQVFQTTVDTLTQTKDG-TEKFLVRLPDGN 92
Query: 91 FVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEI 150
+E V++R G R T+C+S+QVGC M C FCA+G G + NL++GEI
Sbjct: 93 EIECVLLRE--------------GKRITVCVSTQVGCAMACRFCASGMPGLERNLNAGEI 138
Query: 151 VEQLVHA-------SRLSNIRNVVFMGMGEPLNNYAALVEAVRIMTG-LPFQVSPKRITV 202
VEQ +H RL+NI VFMG+GEPL NY +++A+RI+ + +RIT+
Sbjct: 139 VEQALHVKNHLPPDERLTNI---VFMGIGEPLANYDNVIKAIRIINAKWGLGIGARRITI 195
Query: 203 STVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQ 262
STVG + I++ + +NLA+SLHAP R +I+P+ + ++ ++ A +EY +++
Sbjct: 196 STVGNIRGIHRLAQEELQINLAISLHAPDDVTRSKIIPSNKKTGIKNIIAATQEYFQSTG 255
Query: 263 QKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQ 322
+ I EYI++DG+N Q A L +LL+ Q +NL+P NPI + F+ S + + +F
Sbjct: 256 RDISFEYILIDGMNASRQDAESLARLLKGIQCNINLLPLNPIEEFN-FKPPSREAIETFC 314
Query: 323 KILRGSYNIRTTVRKQMGQDISGACGQL 350
KIL+ + + T+R++ G I+ ACGQL
Sbjct: 315 KILK-KHGLIVTLRRKKGDHINAACGQL 341
>gi|257422170|ref|ZP_05599160.1| conserved hypothetical protein [Enterococcus faecalis X98]
gi|422705360|ref|ZP_16763162.1| radical SAM enzyme, Cfr family [Enterococcus faecalis TX0043]
gi|257163994|gb|EEU93954.1| conserved hypothetical protein [Enterococcus faecalis X98]
gi|315157206|gb|EFU01223.1| radical SAM enzyme, Cfr family [Enterococcus faecalis TX0043]
Length = 357
Score = 204 bits (520), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 120/345 (34%), Positives = 186/345 (53%), Gaps = 30/345 (8%)
Query: 18 FEKAGIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHSVVDSSDD 77
F G K+ +W+++ + E ++ + +LL F L +V + D
Sbjct: 18 FLAHGEKKFRATQVWEWLYTKRVATFSEMSNISKSLMTLLEENF-SLNPLKQVIVQEAQD 76
Query: 78 VTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATG 137
T K L +L + +E V+MR + L ++C+++QVGC +GC FCA+G
Sbjct: 77 GTVKYLFELPDKNMIETVLMRQEYGL--------------SVCVTTQVGCNIGCTFCASG 122
Query: 138 TMGFKSNLSSGEIVEQLVHASRLSNIR-------NVVFMGMGEPLNNYAALVEAVRIMT- 189
+ + +L++GEIV Q++ + R +VV MG+GEP +NYA ++ +R +
Sbjct: 123 LLKKQRDLTAGEIVAQIMWVQHYFDERGLDERVSHVVVMGIGEPFDNYANVMNFLRTIND 182
Query: 190 --GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPL 247
GL + + ITVST G+V I +F +NLA+SLHAP +VR IM R+FP+
Sbjct: 183 DKGLA--IGARHITVSTSGLVPKIREFADSGLQVNLAISLHAPNNEVRTSIMRINRSFPI 240
Query: 248 EKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVV--VNLIPFNPIG 305
EKLM A+ EY + + +++ EYIML VND +HA QL LL + + VNLIP+NP+
Sbjct: 241 EKLMAAIDEYIEKTNRRVTFEYIMLSQVNDRPEHAQQLADLLRNKKKLSYVNLIPYNPVS 300
Query: 306 SVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 350
Q+ SS + V F +L+ + I +RK+ G DI ACGQL
Sbjct: 301 EHDQYSRSSKEAVLKFYDVLKKN-GINCVIRKEHGTDIDAACGQL 344
>gi|423348976|ref|ZP_17326632.1| ribosomal RNA large subunit methyltransferase N [Scardovia wiggsiae
F0424]
gi|393703205|gb|EJD65406.1| ribosomal RNA large subunit methyltransferase N [Scardovia wiggsiae
F0424]
Length = 398
Score = 204 bits (520), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 125/331 (37%), Positives = 184/331 (55%), Gaps = 41/331 (12%)
Query: 46 FPSLPSAAYSLLRSKFKP--LTSTLHSVVDSSDDVTTKLLVKLQNGGFVEAVIMRYDSSL 103
+ P ++ +F P +T L D+ T K L +L +G +E+V+M+Y +
Sbjct: 81 YSDFPQDQAGTVKQRFFPDLITPLLEQTADNG--ATIKTLWQLFDGSRIESVLMKYPT-- 136
Query: 104 GKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHAS----- 158
R+TLCISSQVGC MGC FCATG +G N+S+GEI+EQ+ +A+
Sbjct: 137 ------------RTTLCISSQVGCGMGCPFCATGQLGLTRNMSAGEILEQVRYAAAQARD 184
Query: 159 -------RLSNIRNVVFMGMGEPLNNYAALVEAVRIMTGLP---FQVSPKRITVSTVGIV 208
RLSNI VFMGMGE L NY A+++ +R ++ LP F +S + ITVSTVGIV
Sbjct: 185 GALGEPARLSNI---VFMGMGEALGNYNAMLKTIRQISALPPHGFGISARNITVSTVGIV 241
Query: 209 HAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIE 268
I K ++ + LAVSLHAP +R +++P + F ++++A +Y +++++ IE
Sbjct: 242 PGIKKLMNEHIPVRLAVSLHAPSDKLRDELVPMNKRFNTTQVLDAAHDYYMATKRRVSIE 301
Query: 269 YIMLDGVNDEEQHAHQLGKLLETF---QVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKIL 325
Y ++ G+ND+ HA L K L + V VN IP NPI S++ S + + F IL
Sbjct: 302 YALMKGINDQAGHARLLAKRLNHYGDDWVHVNPIPLNPIEG-SRWTASKPEDEARFLDIL 360
Query: 326 RGSYNIRTTVRKQMGQDISGACGQLVVNLPD 356
+ I T+R G DI GACGQL + D
Sbjct: 361 HNA-GIAATLRDTRGSDIDGACGQLAARVKD 390
>gi|340753859|ref|ZP_08690632.1| ribosomal RNA large subunit methyltransferase N [Fusobacterium sp.
2_1_31]
gi|229423409|gb|EEO38456.1| ribosomal RNA large subunit methyltransferase N [Fusobacterium sp.
2_1_31]
Length = 358
Score = 204 bits (520), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 126/330 (38%), Positives = 180/330 (54%), Gaps = 23/330 (6%)
Query: 30 LIW--KYVIENPNCEWDEFPSLPSAAYSLLRSK-FKPLTSTLHSVVDSSDDVTTKLLVKL 86
IW K +I N +D+ +L +L+ + P + L V S D T K L +L
Sbjct: 34 FIWLHKKIIRN----FDDMTNLSLKDREILKENAYIPFFNLLKHQV-SKLDKTEKFLFEL 88
Query: 87 QNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLS 146
++ G +E V++R+ S K R+TLC+SSQVGC + C+FCATG G+ NLS
Sbjct: 89 EDKGTIETVLLRHRDSKNK--------EIRNTLCVSSQVGCPVKCSFCATGQGGYMRNLS 140
Query: 147 SGEIVEQLVHASRL-----SNIRNVVFMGMGEPLNNYAALVEAVRIMTGLP-FQVSPKRI 200
EI+ Q+ R ++ N+VFMGMGEPL N L A+ I++ +S ++I
Sbjct: 141 VSEILNQVYTVERRLRKKDESLNNLVFMGMGEPLLNIDNLSTALSIISNENGINISKRKI 200
Query: 201 TVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKN 260
T+ST GIV I K + + LAVSLH+ + D R QI+P + FPLE L L EYQK
Sbjct: 201 TISTSGIVSGIEKILLEKIPIELAVSLHSAINDKRDQIIPINKNFPLEDLSAVLVEYQKQ 260
Query: 261 SQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSS 320
++++I EYI++D N E A+ L + F VVNLIP+N + V R S K+
Sbjct: 261 TKRRITFEYILIDNFNISEADANALADFIHQFDHVVNLIPYNEVEGVEHKRPSM-KKIDR 319
Query: 321 FQKILRGSYNIRTTVRKQMGQDISGACGQL 350
F L+ + T+R++ G DI GACGQL
Sbjct: 320 FYNYLKNVRKVNVTLRQEKGSDIDGACGQL 349
>gi|441145429|ref|ZP_20963738.1| ribosomal RNA large subunit methyltransferase N [Streptomyces
rimosus subsp. rimosus ATCC 10970]
gi|440621049|gb|ELQ84070.1| ribosomal RNA large subunit methyltransferase N [Streptomyces
rimosus subsp. rimosus ATCC 10970]
Length = 368
Score = 204 bits (520), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 119/321 (37%), Positives = 174/321 (54%), Gaps = 29/321 (9%)
Query: 45 EFPSLPSAAYSLLRSKFKPLTSTLHSVVDSSDDVTTKLLVKLQNGGFVEAVIMRYDSSLG 104
E+ +P+AA L ++ P ++ + DD T K L KL +G VE+V+MRY
Sbjct: 61 EWTDIPAAAREKLAAELLPELMSVVRHISCDDDTTRKTLWKLHDGTLVESVLMRYPD--- 117
Query: 105 KYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRL---- 160
R T+CISSQ GC M C FCATG G NLS+ EIV Q+V R
Sbjct: 118 -----------RVTMCISSQAGCGMNCPFCATGQAGLDRNLSTAEIVHQIVDGMRALRDG 166
Query: 161 ------SNIRNVVFMGMGEPLNNYAALVEAVRIMTGLP---FQVSPKRITVSTVGIVHAI 211
+ + N+VFMGMGEPL NY +V A+R +T +S + ITVSTVG+V A+
Sbjct: 167 EVPGGPARLSNIVFMGMGEPLANYKRVVGAIRRLTDPEPDGVGLSQRGITVSTVGLVPAM 226
Query: 212 NKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIM 271
+F + LAVSLHAP ++R ++P + + ++++A EY + S ++I IEY +
Sbjct: 227 LRFADEGFKCRLAVSLHAPDDELRDTLVPVNTRWKVREVLDAAWEYAEKSGRRISIEYAL 286
Query: 272 LDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNI 331
+ +ND+ LG+LL+ +V VNLIP NP + +D+ + + I ++ +
Sbjct: 287 IRDINDQAWRGDLLGRLLKGKRVHVNLIPLNPTPGSKWTASRPEDEKAFVEAI--AAHGV 344
Query: 332 RTTVRKQMGQDISGACGQLVV 352
TVR GQ+I GACGQL
Sbjct: 345 PVTVRDTRGQEIDGACGQLAA 365
>gi|294785829|ref|ZP_06751117.1| radical SAM enzyme, Cfr family [Fusobacterium sp. 3_1_27]
gi|294487543|gb|EFG34905.1| radical SAM enzyme, Cfr family [Fusobacterium sp. 3_1_27]
Length = 358
Score = 204 bits (520), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 122/336 (36%), Positives = 186/336 (55%), Gaps = 17/336 (5%)
Query: 22 GIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSK-FKPLTSTLHSVVDSSDDVTT 80
G+K+ + ++ ++ + +DE +L +L+ K + P + L V S D T
Sbjct: 24 GLKKFYGKEVFIWLHKKITRSFDEMTNLSLKDREILKEKTYIPFFNLLKYQV-SKIDKTE 82
Query: 81 KLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMG 140
K L +L++ G +E V++R+ S K R R+TLC+SSQVGC + C+FCATG G
Sbjct: 83 KFLFELEDKGTIETVLLRHKDS------KNRE--IRNTLCVSSQVGCPVKCSFCATGQSG 134
Query: 141 FKSNLSSGEIVEQLVHASRL-----SNIRNVVFMGMGEPLNNYAALVEAVRIMTGLP-FQ 194
+ NLS EI+ Q+ R + N+VFMGMGEPL N L +++ I++
Sbjct: 135 YMRNLSVSEILNQIYTVERRLRKKGETLNNLVFMGMGEPLLNIDNLAKSLSIISNENGVN 194
Query: 195 VSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNAL 254
+S ++IT+ST G+V I K D + LA+SLH+ + + R +I+P + FPLE L L
Sbjct: 195 ISKRKITISTSGVVSGIEKILLDKIPIELAISLHSAINEKRDKIIPLNKNFPLEDLSAVL 254
Query: 255 KEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSS 314
EYQK ++++I EYI++D N E A+ L + F VVNLIP+N + V R S
Sbjct: 255 VEYQKQTKRRITFEYILIDNFNISETDANALADFIHQFDHVVNLIPYNEVEGVEHTRPSV 314
Query: 315 DDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 350
K+ F L+ + T+R++ G DI GACGQL
Sbjct: 315 -KKIDKFYNYLKNIRKVNVTLRQEKGSDIDGACGQL 349
>gi|410479374|ref|YP_006767011.1| radical SAM family protein [Leptospirillum ferriphilum ML-04]
gi|406774626|gb|AFS54051.1| putative radical SAM family protein [Leptospirillum ferriphilum
ML-04]
Length = 379
Score = 204 bits (520), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 117/309 (37%), Positives = 173/309 (55%), Gaps = 36/309 (11%)
Query: 75 SDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFC 134
S D T K L++L +G +E+V++ D R+TLC+SSQVGC +GC FC
Sbjct: 76 SRDGTRKFLLELSDGALIESVLIPRDD--------------RATLCVSSQVGCGIGCRFC 121
Query: 135 ATGTMGFKSNLSSGEIVEQLVHASRL-------------------SNIRNVVFMGMGEPL 175
T MG NLS EI+ Q+ A+RL S + ++VFMGMGEPL
Sbjct: 122 RTAEMGLIRNLSVSEILGQVRVANRLLAESPVRDMSKETEPAPLLSRVNHLVFMGMGEPL 181
Query: 176 NNYAALVEAVRIMTGLP-FQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDV 234
N+ LV ++ ++T F +S +RITVST G+ I + +NLAVSL AP +++
Sbjct: 182 ANFDHLVRSLAVLTSPEGFGLSSRRITVSTSGLAGRIRDLGTSGIAVNLAVSLSAPTEEL 241
Query: 235 RCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQV 294
R +MP +R P+ +++A + Y ++Q+I EY++L GVND E A +L +LL F+
Sbjct: 242 RENLMPISRHHPIRSILSACRAYPLRNRQRITFEYVLLGGVNDGEGQARELARLLAPFRS 301
Query: 295 VVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNL 354
VNLIPFNP S + D+V FQ+IL + T+R G+DI GACGQL ++
Sbjct: 302 KVNLIPFNPYPG-SPYHRPDKDRVRRFQEILLAK-GVTATLRTTRGEDILGACGQLALSP 359
Query: 355 PDKISAKST 363
++ +S+
Sbjct: 360 SPALTMESS 368
>gi|254442505|ref|ZP_05055981.1| radical SAM enzyme, Cfr family [Verrucomicrobiae bacterium DG1235]
gi|198256813|gb|EDY81121.1| radical SAM enzyme, Cfr family [Verrucomicrobiae bacterium DG1235]
Length = 368
Score = 204 bits (519), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 117/353 (33%), Positives = 192/353 (54%), Gaps = 28/353 (7%)
Query: 14 IRAEFEKAGIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHSVVD 73
++A F + G + + +++ + WD +LP L + F+ + + +
Sbjct: 18 LQARFAELGEPKFRAKQVLEWLYKKRAETWDAMTNLPKPLREKLAAAFE-IAPSKRVLAK 76
Query: 74 SSDDVTTKLLVKLQNGGFVEAVIMRYDS-SLGKYNGKPRPGGPRSTLCISSQVGCKMGCN 132
S D T KLL+++ + +E V++R +G+ N R T+CIS+QVGC GC
Sbjct: 77 ESSDETEKLLLQMGDNSMIETVVIRAPQIGVGQENS-------RKTICISTQVGCAYGCK 129
Query: 133 FCATGTMGFKSNLSSGEIVEQLVH------------ASRLSNIRNVVFMGMGEPLNNYAA 180
FCA+G +G+K +LS GEIV QL+H + +++ N+V MGMGEP+ NY
Sbjct: 130 FCASGLLGWKRDLSVGEIVSQLIHVCHMEDATTERASEEIASFDNIVVMGMGEPMANYKN 189
Query: 181 LVEAVRIMT---GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQ 237
L+ A+RI+ GL F +RIT+ST G+V I + + LAVSLH +VR Q
Sbjct: 190 LLPALRILNADWGLNF--GARRITISTSGVVPRILELADEREQFRLAVSLHGATNEVRDQ 247
Query: 238 IMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVN 297
IMP R +PLEKL+ A+++Y + + I +E+I+++ +ND + A L K+ + VN
Sbjct: 248 IMPVNRKYPLEKLLPAIQKYAQTKGRMITLEFILIEEINDTLEQADALTKIALDLKAHVN 307
Query: 298 LIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 350
LIP+N + + R S + + ++ + + T+R++ G DI+ ACGQL
Sbjct: 308 LIPYNTVDGLDWKRPSITRQDVFYNRL--KNRGVSATIRREKGHDIAAACGQL 358
>gi|254382049|ref|ZP_04997411.1| conserved hypothetical protein [Streptomyces sp. Mg1]
gi|194340956|gb|EDX21922.1| conserved hypothetical protein [Streptomyces sp. Mg1]
Length = 371
Score = 204 bits (519), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 122/324 (37%), Positives = 176/324 (54%), Gaps = 33/324 (10%)
Query: 45 EFPSLPSAAYSLLRSKFKPLTSTLHSVVDSSDDVTTKLLVKLQNGGFVEAVIMRYDSSLG 104
E+ +P+A+ L+ + P + + DD T K L KL +G VE+V+MRY
Sbjct: 64 EWTDIPAASREKLQQELLPDLMNVLRHISCDDDTTRKTLWKLHDGTLVESVLMRYPD--- 120
Query: 105 KYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRL---- 160
R T+CISSQ GC M C FCATG G NLS+ EIV Q+V R
Sbjct: 121 -----------RVTMCISSQAGCGMNCPFCATGQAGLDRNLSTAEIVHQIVDGMRALRDG 169
Query: 161 ------SNIRNVVFMGMGEPLNNYAALVEAVRIMT-----GLPFQVSPKRITVSTVGIVH 209
+ + N+VFMGMGEPL NY +V A+R +T GL +S + ITVSTVG+V
Sbjct: 170 EVPGGPARLSNIVFMGMGEPLANYNRVVGAIRRLTDPEPDGL--GLSQRGITVSTVGLVP 227
Query: 210 AINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEY 269
A+ +F + LAVSLHAP ++R ++P + + ++++A EY + S ++I IEY
Sbjct: 228 AMLRFADEGFKCRLAVSLHAPDDELRDTLVPVNTRWNVREVLDAAWEYAEKSGRRISIEY 287
Query: 270 IMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSY 329
++ +ND+ LGKLL+ +V VNLIP NP + +D+ + + I R +
Sbjct: 288 ALIRDINDQAWRGDLLGKLLKGKRVHVNLIPLNPTPGSKWTASRPEDERAFVEAIAR--H 345
Query: 330 NIRTTVRKQMGQDISGACGQLVVN 353
+ TVR GQ+I GACGQL +
Sbjct: 346 GVPVTVRDTRGQEIDGACGQLAAS 369
>gi|443474683|ref|ZP_21064654.1| 23S rRNA m(2)A-2503 methyltransferase [Pseudanabaena biceps PCC
7429]
gi|443020573|gb|ELS34518.1| 23S rRNA m(2)A-2503 methyltransferase [Pseudanabaena biceps PCC
7429]
Length = 355
Score = 204 bits (519), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 113/278 (40%), Positives = 167/278 (60%), Gaps = 19/278 (6%)
Query: 75 SDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFC 134
+ D T K L+KL +G VE V + P R T+C+S+QVGC MGC+FC
Sbjct: 85 TRDGTEKFLLKLADGEIVETVGI--------------PTSKRLTVCVSTQVGCPMGCDFC 130
Query: 135 ATGTMGFKSNLSSGEIVEQLVHASRLSNIR--NVVFMGMGEPLNNYAALVEAVRIMTGLP 192
ATG GF+ NL+ EI++Q++ + R ++VFMGMGEPL NY LV A+ ++
Sbjct: 131 ATGKGGFRRNLAKHEIIDQVLTVQEVMQQRVSHIVFMGMGEPLLNYENLVGAIGVINK-D 189
Query: 193 FQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMN 252
+ + ITVSTVGI + I +F + + LAVSLHAP Q+VR Q++P+A +PL LM+
Sbjct: 190 IGIGQRNITVSTVGIPNQIPRFAEEHLQVTLAVSLHAPTQEVRAQVIPSADRYPLIALMD 249
Query: 253 ALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRT 312
+EY + + ++I EY +L GVND + A +L L+ FQ VNLIP+NP+ S + ++
Sbjct: 250 DCREYVEITGRRISFEYTLLAGVNDSAEQAQELAYLIRGFQSHVNLIPYNPV-SDADYKR 308
Query: 313 SSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 350
S+ + +F +IL + I +VR+ G + ACGQL
Sbjct: 309 PSERAIQTFVQILE-DHKIAVSVRRTRGLEADAACGQL 345
>gi|242277580|ref|YP_002989709.1| ribosomal RNA large subunit methyltransferase N [Desulfovibrio
salexigens DSM 2638]
gi|242120474|gb|ACS78170.1| radical SAM enzyme, Cfr family [Desulfovibrio salexigens DSM 2638]
Length = 351
Score = 204 bits (519), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 127/333 (38%), Positives = 185/333 (55%), Gaps = 37/333 (11%)
Query: 31 IWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLH---SVVDSSDDVTTKLLVKLQ 87
IW+++ + ++D +L LR + K H VV +S D T KLL++L+
Sbjct: 36 IWQWLWQKGVEDFDSMTNLAKN----LRDELKAKAVINHPQVDVVQTSKDGTIKLLLRLK 91
Query: 88 NGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSS 147
+G VE V++ P R T C+S+QVGC M C FC TG MGF+ N+S
Sbjct: 92 DGALVETVLI--------------PMEGRYTQCLSTQVGCAMACTFCNTGLMGFERNMSM 137
Query: 148 GEIVEQLVHASR------LSNIRNVVFMGMGEPLNNYAALVEAVRIMT---GLPFQVSPK 198
E++ Q++ + L ++N+VFMGMGEPL N L+ +R + GL F P+
Sbjct: 138 SEMLGQVLAGRKYLRENNLDPLKNLVFMGMGEPLLNLDNLIRTLRNLNNQDGLSF--VPR 195
Query: 199 RITVSTVGIVHAINKFHSDLPGLNL-AVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEY 257
RITVS+VG V + + GL L A+SLHAP Q++R +IMP A +E L+ A+ +
Sbjct: 196 RITVSSVGFVKQLEELGK--TGLTLPAISLHAPTQELREKIMPKAAKTHIEDLLAAMDRF 253
Query: 258 QKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDK 317
++K+ EY++L GVND +HA QL KLL + VNLI +NP G ++ + +K
Sbjct: 254 PLKPREKVTYEYLLLGGVNDSIEHAKQLVKLLGHRRCKVNLIAYNP-GDEPLYKAPTREK 312
Query: 318 VSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 350
V +F+K L I T+R+ MGQDI ACGQL
Sbjct: 313 VLAFEKYL-WDKKITATIRRSMGQDIKAACGQL 344
>gi|392407646|ref|YP_006444254.1| 23S rRNA m(2)A-2503 methyltransferase [Anaerobaculum mobile DSM
13181]
gi|390620782|gb|AFM21929.1| 23S rRNA m(2)A-2503 methyltransferase [Anaerobaculum mobile DSM
13181]
Length = 344
Score = 204 bits (519), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 119/338 (35%), Positives = 187/338 (55%), Gaps = 26/338 (7%)
Query: 19 EKAGIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKFK---PLTSTLHSVVDSS 75
EK G++++ + +++ + ++ E +L LR K LT ++S
Sbjct: 21 EKFGLQRYRADQVCQWIYQKKVFDFHEMTNLSKD----LRQKLANSITLTPPFLVRAETS 76
Query: 76 DDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCA 135
D T K L +LQ+G VE+V++ L T C+S+QVGC + C FCA
Sbjct: 77 KDGTRKFLWQLQDGERVESVLLAQQGRL--------------TACLSTQVGCPLSCAFCA 122
Query: 136 TGTMGFKSNLSSGEIVEQLVHASRLS--NIRNVVFMGMGEPLNNYAALVEAVRIMTGLPF 193
+G GF NLS+GEI Q + + + +I N+V+MGMGEP N A+ +++RI+
Sbjct: 123 SGKSGFVRNLSTGEITGQFLAMEKFTGQDIDNIVYMGMGEPFLNQEAVFKSIRILNEPKM 182
Query: 194 Q-VSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMN 252
+ + + T+ST GIV I + L+VSLHAP +R ++MP + +PL LM
Sbjct: 183 RGLGIRHFTISTAGIVPGILVLAEMKIPVRLSVSLHAPNDQLRSKLMPINKQYPLSTLME 242
Query: 253 ALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRT 312
AL++YQ ++ +I IEY+M++GVND +HA++L LL V VNLIP+N + F+
Sbjct: 243 ALRKYQSATKDRITIEYLMMNGVNDSTEHAYELATLLSGLSVYVNLIPYNTVPG-GNFKR 301
Query: 313 SSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 350
S+D ++ +F IL NI +R++ G DI+ ACGQL
Sbjct: 302 STDGRIKAFADIL-SKLNIECEIRRERGSDINAACGQL 338
>gi|55981906|ref|YP_145203.1| ribosomal RNA large subunit methyltransferase N [Thermus
thermophilus HB8]
gi|81363686|sp|Q5SGZ3.1|RLMN_THET8 RecName: Full=Probable dual-specificity RNA methyltransferase RlmN;
AltName: Full=23S rRNA
(adenine(2503)-C(2))-methyltransferase; AltName:
Full=23S rRNA m2A2503 methyltransferase; AltName:
Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=tRNA (adenine(37)-C(2))-methyltransferase;
AltName: Full=tRNA m2A37 methyltransferase
gi|55773319|dbj|BAD71760.1| conserved hypothetical protein [Thermus thermophilus HB8]
Length = 355
Score = 204 bits (519), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 119/329 (36%), Positives = 179/329 (54%), Gaps = 23/329 (6%)
Query: 42 EWDEFPSLPSAAYSLLRSKFKPLTSTLHSVVDSSDDVTTKLLVKLQNGGFVEAVIMRYDS 101
++ E LP A L +++ +L S D + K L L +G EAV M Y++
Sbjct: 39 DFSEMTDLPKALREALAREWRLSEFSLVQAFPSQDG-SVKYLFTLLDGKKTEAVYMPYEN 97
Query: 102 SLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLV---HAS 158
R T+C+S+ VGC GC FCATG +GF NL++ EI++QL+ +
Sbjct: 98 --------------RKTVCLSTMVGCPAGCTFCATGALGFGRNLTAAEILDQLLTIAYHQ 143
Query: 159 RLS--NIRNVVFMGMGEPLNNYAALVEAVRIMT-GLPFQVSPKRITVSTVGIVHAINKFH 215
LS IRNVV MGMGEPL N +++AVRIM +SP+R+T+STVGI I +
Sbjct: 144 GLSPREIRNVVLMGMGEPLLNLRNVLKAVRIMLHKKALALSPRRVTLSTVGIPKGIYRLA 203
Query: 216 SDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGV 275
+ G+ LA+SLHAP + R +I+P A +P+ ++M A++ Y +++++ EY +L GV
Sbjct: 204 EEDLGVRLALSLHAPDDETRRKIIPTAHRYPIAEIMEAVRHYHAKTKRRVTFEYTLLKGV 263
Query: 276 NDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTV 335
ND A L KLL+ VNLIPFNP T ++ +++ R + T++
Sbjct: 264 NDHLWQARLLAKLLKGLSAHVNLIPFNPWEGAPVVGTPRAGVLAFAEELKR--LGVPTSI 321
Query: 336 RKQMGQDISGACGQLVVNLPDKISAKSTP 364
R GQD+ ACGQL + +P ++ P
Sbjct: 322 RWSRGQDVGAACGQLALKVPRPLTLTPLP 350
>gi|406947137|gb|EKD78125.1| hypothetical protein ACD_42C00034G0001 [uncultured bacterium]
Length = 368
Score = 204 bits (519), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 127/314 (40%), Positives = 179/314 (57%), Gaps = 30/314 (9%)
Query: 56 LLRSKFKPLT--STLHSVVD-SSDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRP 112
L R K K T + L ++ D +S D T K L +L +G +E V + P
Sbjct: 54 LFREKLKAETCITLLETISDQTSSDGTRKFLFRLYDGNAIETVFI--------------P 99
Query: 113 GGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQ-------LVHASRLSNIRN 165
R TLC+SSQVGC + C+FC+TG GF NLS EI+ Q L RL+ I N
Sbjct: 100 EKTRGTLCVSSQVGCALNCSFCSTGKEGFNRNLSLAEIIGQVFLVRDKLKDKPRLT-ITN 158
Query: 166 VVFMGMGEPLNNYAALVEAVRIMT-GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLA 224
VV MGMGEPL NY ++EA+ +MT L + +S R+T+ST G+V + + D P ++LA
Sbjct: 159 VVMMGMGEPLLNYPPVIEAMDLMTHDLAYGLSKYRVTLSTSGVVPMMLQLKKDSP-VSLA 217
Query: 225 VSLHAPVQDVRCQIMPAARAFPLEKLMNALKEY-QKNSQQKIFIEYIMLDGVNDEEQHAH 283
VSLHAP ++R Q++P + +PLE LM + Y +S++ I EY+ML +ND HA
Sbjct: 218 VSLHAPTNELREQLVPINKKYPLEVLMPVCRNYFPADSKRCIVFEYVMLKNINDSLTHAK 277
Query: 284 QLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDI 343
QL +LL+ VNLIPFNP + + S + + +FQ L + I+T +RK G+DI
Sbjct: 278 QLIRLLDNMPCKVNLIPFNPFPK-TNYVCSDMETILAFQNRLTAA-GIKTWIRKTRGEDI 335
Query: 344 SGACGQLVVNLPDK 357
GACGQL + D+
Sbjct: 336 DGACGQLAGDFTDR 349
>gi|383788372|ref|YP_005472941.1| hypothetical protein CSE_07120 [Caldisericum exile AZM16c01]
gi|381364009|dbj|BAL80838.1| hypothetical protein CSE_07120 [Caldisericum exile AZM16c01]
Length = 349
Score = 204 bits (519), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 115/290 (39%), Positives = 169/290 (58%), Gaps = 15/290 (5%)
Query: 74 SSDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNF 133
+S D TK + +L + +E+V+++ +++G+ T C+S+QVGC M C F
Sbjct: 72 TSKDDATKFVFELSDKRLIESVLIKNTNNIGR---------TWFTACLSTQVGCSMACQF 122
Query: 134 CATGTMGFKSNLSSGEIVEQLVHASRLSNIRNVVFMGMGEPLNNYAALVEAVRIMTGLP- 192
CATG MG NL +GEIVEQ + ++S + N+VFMGMGEPL NY + +A+ I+T
Sbjct: 123 CATGKMGLIRNLEAGEIVEQFLQLEKISPVSNIVFMGMGEPLLNYENVKKAIEILTDENG 182
Query: 193 FQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMN 252
++ +RIT+ST GI I K ++P + LA+SLHA +Q R +MP + +PL KL
Sbjct: 183 RELGKRRITISTSGITPMIYKLADEIPSVKLAISLHAAIQRKRDSLMPGLKNYPLNKLKE 242
Query: 253 ALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVV-VNLIPFNPIGSVSQFR 311
AL Y + + + +EY+++D VND + A L K + V VNLI +N I S+S F+
Sbjct: 243 ALIYYNERTGNTVTLEYLLIDNVNDTKSDAEALLKFSRDLKFVKVNLIHYNEIPSIS-FK 301
Query: 312 TSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDKISAK 361
S K FQK L S +RTT+R G D+S ACGQL N + + K
Sbjct: 302 PSK--KEIEFQKFLL-SNGLRTTLRLSKGTDVSAACGQLATNSKESLQFK 348
>gi|393201778|ref|YP_006463620.1| Fe-S-cluster redox enzyme [Solibacillus silvestris StLB046]
gi|406664655|ref|ZP_11072430.1| Ribosomal RNA large subunit methyltransferase N [Bacillus
isronensis B3W22]
gi|327441109|dbj|BAK17474.1| predicted Fe-S-cluster redox enzyme [Solibacillus silvestris
StLB046]
gi|405387503|gb|EKB46927.1| Ribosomal RNA large subunit methyltransferase N [Bacillus
isronensis B3W22]
Length = 382
Score = 204 bits (519), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 119/326 (36%), Positives = 190/326 (58%), Gaps = 23/326 (7%)
Query: 31 IWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHSVVDSSDDVTTKLLVKLQNGG 90
I++++ E ++E +LP A L ++F LT+ + S D T K L +LQ+G
Sbjct: 64 IYEWLYEKRVQTFEEMSNLPKALREKLEAEF-ALTTLSTIIKQESKDGTIKFLFQLQDGY 122
Query: 91 FVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEI 150
+E V+MR+D +++C+++QVGC++GC FCA+ G K +L +GEI
Sbjct: 123 SIETVLMRHDYG--------------NSICVTTQVGCRIGCTFCASTLGGLKRHLMAGEI 168
Query: 151 VEQLVHASRL-----SNIRNVVFMGMGEPLNNYAALVEAVRIMTGLP-FQVSPKRITVST 204
VEQ+V + + ++V MG+GEP +NY A++ ++IM + + ITVST
Sbjct: 169 VEQVVKVQQQLDETEERVSSIVIMGIGEPFDNYDAMMNFLKIMNDDKGLNIGARHITVST 228
Query: 205 VGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQK 264
GIV I +F + +N AVSLHAP Q+ R ++MP A+A+ LE+LM A+K Y K + ++
Sbjct: 229 SGIVPKIYEFADEGMQINFAVSLHAPNQEARQKLMPIAKAYKLEELMEAVKYYTKKTGRR 288
Query: 265 IFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKI 324
+ EY ++ G ND E+ A +L KL++ + VNLIP N + RTS K+ +F++
Sbjct: 289 VTFEYGLMSGQNDTEEVAMELAKLIKNIKCHVNLIPINYVPERDYIRTSR-SKIFAFERT 347
Query: 325 LRGSYNIRTTVRKQMGQDISGACGQL 350
L+ I T+R++ G DI+ ACGQL
Sbjct: 348 LK-EQGINVTIRREQGADIAAACGQL 372
>gi|297568774|ref|YP_003690118.1| radical SAM enzyme, Cfr family [Desulfurivibrio alkaliphilus AHT2]
gi|296924689|gb|ADH85499.1| radical SAM enzyme, Cfr family [Desulfurivibrio alkaliphilus AHT2]
Length = 354
Score = 204 bits (519), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 119/293 (40%), Positives = 169/293 (57%), Gaps = 29/293 (9%)
Query: 72 VDSSDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGC 131
V+SS D T K +L +G +E+V++ P R TLC+SSQVGC MGC
Sbjct: 73 VESSQDGTVKFAFRLADGQLIESVLI--------------PEDDRYTLCVSSQVGCAMGC 118
Query: 132 NFCATGTMGFKSNLSSGEIVEQLVHASRL-----------SNIRNVVFMGMGEPLNNYAA 180
FC T TMGFK NL + EIV Q+ A R + I N+VFMGMGEPL N+
Sbjct: 119 RFCLTATMGFKRNLEAAEIVGQVDAALRWLLARPGATGEKTRINNLVFMGMGEPLLNFDH 178
Query: 181 LVEAVRI-MTGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIM 239
L+ A++I M S +RITVST GIV + + +P +NLAVSLHA D+R Q+M
Sbjct: 179 LLRAIKILMEQRGHDFSGRRITVSTCGIVPKMKELGEQVP-VNLAVSLHAADNDIRDQLM 237
Query: 240 PAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLI 299
P + +PLE+L+ A +EY +++I IEY+M+ +ND A L K L + +N++
Sbjct: 238 PINKKYPLEQLLRACREYPLPPRRRIMIEYVMIKDLNDSVAQARLLVKKLHGIRCKINIL 297
Query: 300 PFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVV 352
P+N S ++ ++ V +F++ILR + + T +R+ G DIS ACGQL V
Sbjct: 298 PYNE-NPDSPYQAPDEETVENFRQILRRAGHT-TLLRQSRGADISAACGQLAV 348
>gi|294056045|ref|YP_003549703.1| Cfr family radical SAM protein [Coraliomargarita akajimensis DSM
45221]
gi|293615378|gb|ADE55533.1| radical SAM enzyme, Cfr family [Coraliomargarita akajimensis DSM
45221]
Length = 351
Score = 204 bits (519), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 114/303 (37%), Positives = 170/303 (56%), Gaps = 25/303 (8%)
Query: 57 LRSKFKPLTSTLHSVVD--SSDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGG 114
L ++ P+ L + S+D T K L+KL +G VE+V M + PG
Sbjct: 57 LAAEDAPVRCALEQTAETPSADGYTHKYLLKLADGAEVESVRMGF------------PG- 103
Query: 115 PRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRL------SNIRNVVF 168
R T C+SSQVGC MGC FCATG MGF LS+GEIV Q +H R +RN+V
Sbjct: 104 -RFTACLSSQVGCAMGCVFCATGQMGFSRQLSAGEIVAQALHVERRLREDFGERLRNIVM 162
Query: 169 MGMGEPLNNYAALVEAVRIMTGLP-FQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSL 227
MGMGEPL+N+ L++A+ I+T + P R+ +STVG V I K +LAVSL
Sbjct: 163 MGMGEPLHNFEPLMDALDILTDTRGLNIGPARVAISTVGYVPGIRKLMQHAKRYSLAVSL 222
Query: 228 HAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGK 287
H + R +++P + +PL +L+ +EY + + ++F + ++ GVND + HA +L
Sbjct: 223 HGASDEERGKLIPINKRWPLAELLETCREYSQVKKARVFFAWTLIKGVNDSDDHAQRLAA 282
Query: 288 LLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGAC 347
LL+ VNLIP NP S + +V +FQ+I++ + + +TVR++ G D++ C
Sbjct: 283 LLQGMDAHVNLIPLNPTDDFSG-EAPEEARVRAFQEIIQAA-GLPSTVRQRRGIDVAAGC 340
Query: 348 GQL 350
GQL
Sbjct: 341 GQL 343
>gi|325265757|ref|ZP_08132444.1| cfr family radical SAM enzyme [Kingella denitrificans ATCC 33394]
gi|324982740|gb|EGC18365.1| cfr family radical SAM enzyme [Kingella denitrificans ATCC 33394]
Length = 364
Score = 204 bits (519), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 133/359 (37%), Positives = 193/359 (53%), Gaps = 28/359 (7%)
Query: 9 FDGGIIRAEFEKAGIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTL 68
FD + F + G K + +++ + +DE L + + L+ K L
Sbjct: 8 FDLNALTEHFAQMGEKPFRAKQVMRWIHQGGAESFDEMTDLAKSLRAKLQEKAVVGIPVL 67
Query: 69 HSVVDSSDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCK 128
+ +S D T K L+ + G VE V + P R TLCISSQVGC
Sbjct: 68 MAAQESRDG-TRKWLLDVGTGNGVETVFI--------------PETERGTLCISSQVGCA 112
Query: 129 MGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN--------IRNVVFMGMGEPLNNYAA 180
+ C FC+TG GF NL++ EI+ QL A++ I NVV MGMGEP+ NY
Sbjct: 113 LECTFCSTGRQGFNRNLTAAEIIGQLWWANKALGVTPKNERVISNVVMMGMGEPMANYDN 172
Query: 181 LVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIM 239
+V A+ IM + +S +R+TVST G+V +++ D+P + LAVSLHA VR +I+
Sbjct: 173 VVTALSIMLDDHGYGLSRRRVTVSTSGMVPQMDRLKEDMP-VALAVSLHASNDKVRDEIV 231
Query: 240 PAARAFPLEKLMNALKEY-QKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNL 298
P + +PL++LM A Y K + I EY+MLDGVND+ +HAH+L +L++ NL
Sbjct: 232 PLNKKYPLKELMAACNRYLTKAPRDFITFEYVMLDGVNDKPEHAHELVQLVKDTPCKFNL 291
Query: 299 IPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDK 357
IPFNP + S + SS+ ++ F++IL + + TTVRK G DI ACGQL + DK
Sbjct: 292 IPFNPFPN-SGYERSSNKNINIFKEILMEA-GLVTTVRKTRGDDIDAACGQLAGQVQDK 348
>gi|384519050|ref|YP_005706355.1| radical SAM superfamily protein [Enterococcus faecalis 62]
gi|323481183|gb|ADX80622.1| radical SAM superfamily protein [Enterococcus faecalis 62]
Length = 357
Score = 204 bits (519), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 120/345 (34%), Positives = 186/345 (53%), Gaps = 30/345 (8%)
Query: 18 FEKAGIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHSVVDSSDD 77
F G K+ +W+++ + E ++ + +LL F L +V + D
Sbjct: 18 FLAHGEKKFRATQVWEWLYTKRVASFSEMSNISKSLMTLLEENF-SLNPLKQVIVQEAQD 76
Query: 78 VTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATG 137
T K L +L + +E V+MR + L ++C+++QVGC +GC FCA+G
Sbjct: 77 GTVKYLFELPDKNMIETVLMRQEYGL--------------SVCVTTQVGCNIGCTFCASG 122
Query: 138 TMGFKSNLSSGEIVEQLVHASRLSNIR-------NVVFMGMGEPLNNYAALVEAVRIMT- 189
+ + +L++GEIV Q++ + R +VV MG+GEP +NYA ++ +R +
Sbjct: 123 LLKKQRDLTAGEIVAQIMWVQHYFDERGLDERVSHVVVMGIGEPFDNYANVMNFLRTIND 182
Query: 190 --GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPL 247
GL + + ITVST G+V I +F +NLA+SLHAP +VR IM R+FP+
Sbjct: 183 DKGLA--IGARHITVSTSGLVPKIREFADSGLQVNLAISLHAPNNEVRTSIMRINRSFPI 240
Query: 248 EKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVV--VNLIPFNPIG 305
EKLM A+ EY + + +++ EYIML VND +HA QL LL + + VNLIP+NP+
Sbjct: 241 EKLMAAIDEYIEKNNRRVTFEYIMLSQVNDRPEHAQQLADLLRNKKKLSYVNLIPYNPVS 300
Query: 306 SVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 350
Q+ SS + V F +L+ + I +RK+ G DI ACGQL
Sbjct: 301 EHDQYSRSSKEAVLKFYDVLKKN-GINCVIRKEHGTDIDAACGQL 344
>gi|256830852|ref|YP_003159580.1| radical SAM protein [Desulfomicrobium baculatum DSM 4028]
gi|256580028|gb|ACU91164.1| radical SAM enzyme, Cfr family [Desulfomicrobium baculatum DSM
4028]
Length = 360
Score = 204 bits (519), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 120/344 (34%), Positives = 193/344 (56%), Gaps = 32/344 (9%)
Query: 31 IWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHSVVDSSDDVTTKLLVKLQNGG 90
+W+++ E+ +L L ++ +H V SSD T KLL++L +G
Sbjct: 29 LWQWLWRKGVREFSAMTNLARDFREQLMREWALDWPEVHEVQTSSDG-TVKLLLRLADGA 87
Query: 91 FVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEI 150
VE V++ P R T C+S Q+GC MGC FC+TG MGF N++ GEI
Sbjct: 88 LVETVLI--------------PDKERYTQCLSCQIGCPMGCTFCSTGLMGFSRNMTGGEI 133
Query: 151 VEQLVHASRL-------SNIRNVVFMGMGEPLNNYAALVEAVRIMT---GLPFQVSPKRI 200
Q++ A ++N+V+MGMGEPL N+ + +++I++ GL F S +RI
Sbjct: 134 AAQVLVARDYLRAHGLGDEVKNLVYMGMGEPLTNWDEVRRSLQILSNAEGLEF--SRRRI 191
Query: 201 TVSTVGIVHAINKFHSDLPGLNL-AVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQK 259
T+ST I ++ F + GL L A+SLHAP Q++R +MP A +P+E+L+ AL+ +
Sbjct: 192 TLSTCAIKGKMDVF--GIEGLALPAISLHAPTQEIRESLMPGAARWPIEELIAALQGMEL 249
Query: 260 NSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVS 319
+++++ IEYI++ GVND QHA QL +LL + +NLI +NP G ++ + V
Sbjct: 250 KARERVTIEYILIKGVNDSLQHARQLVRLLSHLKCKINLIAYNP-GPGIEYAAPAPGDVL 308
Query: 320 SFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDKISAKST 363
+F+++LR T+RK GQDI+ ACGQL ++++ ++
Sbjct: 309 AFEELLR-KKGFTVTLRKSKGQDIAAACGQLKTEAQGRMNSTTS 351
>gi|23100552|ref|NP_694019.1| hypothetical protein OB3097 [Oceanobacillus iheyensis HTE831]
gi|81745262|sp|Q8ELW7.1|RLMN_OCEIH RecName: Full=Probable dual-specificity RNA methyltransferase RlmN;
AltName: Full=23S rRNA
(adenine(2503)-C(2))-methyltransferase; AltName:
Full=23S rRNA m2A2503 methyltransferase; AltName:
Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=tRNA (adenine(37)-C(2))-methyltransferase;
AltName: Full=tRNA m2A37 methyltransferase
gi|22778785|dbj|BAC15053.1| hypothetical conserved protein [Oceanobacillus iheyensis HTE831]
Length = 355
Score = 204 bits (519), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 115/339 (33%), Positives = 185/339 (54%), Gaps = 26/339 (7%)
Query: 22 GIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHSVVDSSDDVTTK 81
G K+ +W ++ + +DE ++ +A LL+ F L + + S D T K
Sbjct: 22 GEKRFRAEQVWNWLYKKRINSFDEMNNVNQSAIQLLKDNF-VLHTMGEEIRQESQDGTIK 80
Query: 82 LLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGF 141
L KL++G +E V+MR+ L ++C+++QVGC +GC FCA+G +
Sbjct: 81 FLFKLEDGNLIETVLMRFHYGL--------------SVCVTTQVGCNIGCTFCASGLLRK 126
Query: 142 KSNLSSGEIVEQLVHASRLSNIR-------NVVFMGMGEPLNNYAALVEAV-RIMTGLPF 193
+LSSGE+VEQ+++ + + R ++V MG+GEP +NY L++ + +
Sbjct: 127 SRDLSSGEVVEQIMNVQKHLDERGEKDRVSHIVVMGIGEPFDNYNNLMDFLYTVNDDRGL 186
Query: 194 QVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNA 253
+ + ITVST G+ H I +F D +NLA+SLHAP ++R +IM RAFP++KLM +
Sbjct: 187 NIGARHITVSTSGLAHKIYEFADDPIQVNLAISLHAPNDELRTKIMKINRAFPIDKLMKS 246
Query: 254 LKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQ--VVVNLIPFNPIGSVSQFR 311
+ Y + ++I EYIMLD VND ++ A +L L++ + VNLIP+N + +R
Sbjct: 247 VDYYLQKKNRRITYEYIMLDDVNDHKKEAIELANLIKNHRHLAYVNLIPYNTVDEHIDYR 306
Query: 312 TSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 350
S + + +F + L I VR + G DI ACGQL
Sbjct: 307 RSKSENIQAFYETL-TELGINCGVRWENGADIDAACGQL 344
>gi|451982040|ref|ZP_21930374.1| Ribosomal RNA large subunit methyltransferase N [Nitrospina
gracilis 3/211]
gi|451760705|emb|CCQ91650.1| Ribosomal RNA large subunit methyltransferase N [Nitrospina
gracilis 3/211]
Length = 341
Score = 204 bits (519), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 112/283 (39%), Positives = 167/283 (59%), Gaps = 21/283 (7%)
Query: 75 SDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFC 134
S D + K L L++G VEA+ M P R TLCIS+QVGC++ C+FC
Sbjct: 72 SRDGSIKYLFGLEDGQEVEAIWM--------------PETDRKTLCISTQVGCRLACSFC 117
Query: 135 ATGTMGFKSNLSSGEIVEQLVHA----SRLSNIRNVVFMGMGEPLNNYAALVEAVRIMTG 190
T +MG K +L+S EI+ Q + + + + N+VFMGMGEPL+NY A+ +A+R+M
Sbjct: 118 LTASMGLKRHLTSAEIIGQYLAVNADHTEENRVSNIVFMGMGEPLDNYDAVCDALRLMVS 177
Query: 191 -LPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEK 249
++S ++IT+ST G+V I +F S+ +NLA+SL+A R QIMP R +P+E
Sbjct: 178 PEALRISTRKITLSTSGLVDRIERFKSENLHVNLAISLNATDNPTRDQIMPINRKYPIEV 237
Query: 250 LMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQ 309
L++ L+ Y +++ EY+ML G+ND ++ A +L KLL +NLIPFN S +
Sbjct: 238 LLDCLRTYPLKPSRRLTFEYVMLKGINDTDEDARRLAKLLRNIPSKINLIPFNAFDS-AD 296
Query: 310 FRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVV 352
++ + +V +FQ L G + VRK G DI GACGQL +
Sbjct: 297 YQPPAPQRVQAFQDYLIGKH-YSVFVRKNRGTDILGACGQLAL 338
>gi|150390541|ref|YP_001320590.1| ribosomal RNA large subunit methyltransferase N [Alkaliphilus
metalliredigens QYMF]
gi|205829711|sp|A6TRW3.1|RLMN_ALKMQ RecName: Full=Probable dual-specificity RNA methyltransferase RlmN;
AltName: Full=23S rRNA
(adenine(2503)-C(2))-methyltransferase; AltName:
Full=23S rRNA m2A2503 methyltransferase; AltName:
Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=tRNA (adenine(37)-C(2))-methyltransferase;
AltName: Full=tRNA m2A37 methyltransferase
gi|149950403|gb|ABR48931.1| radical SAM enzyme, Cfr family [Alkaliphilus metalliredigens QYMF]
Length = 352
Score = 204 bits (519), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 117/328 (35%), Positives = 178/328 (54%), Gaps = 19/328 (5%)
Query: 42 EWDEFPSLPSAAYSLLRSKFKPLTSTLHSVVDSSDDVTTKLLVKLQNGGFVEAVIMRYDS 101
+++E +L L + + + + S D T K L L +G +E V+M+Y
Sbjct: 41 QYEEMTNLSKKLIKQLSEETRITHNRIEEKFVSKIDGTVKYLFLLDDGHIIEGVLMKYKH 100
Query: 102 SLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQ--LVHASR 159
T CIS+QVGC MGC FCA+ T G NL +GE+++Q L+ +
Sbjct: 101 GF--------------TACISTQVGCAMGCQFCASTTGGLIRNLRAGEMIDQILLMQQDQ 146
Query: 160 LSNIRNVVFMGMGEPLNNYAALVEAVRIMTGLP-FQVSPKRITVSTVGIVHAINKFHSDL 218
I N+V MG GEPL+NY + ++I+ + + IT+ST G+V I K +
Sbjct: 147 GERISNIVLMGSGEPLHNYDETIRFLKIVNDPEGLNIGNRHITLSTCGLVPEIKKLGALQ 206
Query: 219 PGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDE 278
+NLA+SLHAP +R Q MP A+ + +++L+ + +Y +N+ ++I EY +++ VND
Sbjct: 207 IPINLAISLHAPNDQLRKQTMPIAQKYTIDQLIQSCYDYLENNNRRITFEYALIEDVNDG 266
Query: 279 EQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQ 338
E+ AH+L KLL+ VNLIP NPI + ++ S D +V FQ+IL+ S I T+R++
Sbjct: 267 EKEAHELSKLLKGLLCHVNLIPINPIEERT-YQKSKDSQVKKFQQILK-SNGIEATIRRE 324
Query: 339 MGQDISGACGQLVVNLPDKISAKSTPPV 366
MG DI GACGQL D K V
Sbjct: 325 MGTDIQGACGQLRRKYVDDQEKKEISEV 352
>gi|291514720|emb|CBK63930.1| 23S rRNA m(2)A-2503 methyltransferase [Alistipes shahii WAL 8301]
Length = 342
Score = 204 bits (519), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 120/330 (36%), Positives = 177/330 (53%), Gaps = 25/330 (7%)
Query: 32 WKYV--IENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHSVVDSSDDVTTKLLVKLQNG 89
W YV E+P + +A L F P S V +S+D T K L + G
Sbjct: 35 WLYVRHTEDPL----RMTDIAAAHRQRLAEWFSPALSAPERVTESADG-TKKYLFRTLEG 89
Query: 90 GFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGE 149
+VE+ + P G R+TLC+SSQ GC+MGC FCATG G + +L++ E
Sbjct: 90 HYVESAYI--------------PDGERATLCVSSQAGCRMGCRFCATGRQGLQQSLTAAE 135
Query: 150 IVEQLVHASRLSNIRNVVFMGMGEPLNNYAALVEAVRIMTG-LPFQVSPKRITVSTVGIV 208
I+ Q V + N+VFMGMGEPL+N ++ A+ I+T F SP RIT+ST G+V
Sbjct: 136 ILNQAVSLPERDKLTNLVFMGMGEPLDNTDEVLRALEIITAEWGFGWSPTRITLSTAGVV 195
Query: 209 HAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIE 268
+ +F D ++LAVSLH P + R +IMP RA+P+ ++ L+EY Q+++ E
Sbjct: 196 PELRRF-LDATKVHLAVSLHNPFHEERMEIMPVERAWPIAEVAAILREYDFTHQRRVSFE 254
Query: 269 YIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGS 328
YI++ G+ND +H +L +LL + +NLI F+ I F + D+ + F+ L +
Sbjct: 255 YIVMSGLNDSPRHIRELTRLLNGIKCRINLIRFHRIPDSPYF-SPGDEAMVRFRDAL-TA 312
Query: 329 YNIRTTVRKQMGQDISGACGQLVVNLPDKI 358
I+TT+R G+DI ACG L L I
Sbjct: 313 RGIQTTIRASRGEDIQAACGLLSTRLKGGI 342
>gi|319892212|ref|YP_004149087.1| ribosomal RNA large subunit methyltransferase N [Staphylococcus
pseudintermedius HKU10-03]
gi|386319519|ref|YP_006015682.1| radical SAM enzyme, Cfr family [Staphylococcus pseudintermedius
ED99]
gi|317161908|gb|ADV05451.1| Ribosomal RNA large subunit methyltransferase N [Staphylococcus
pseudintermedius HKU10-03]
gi|323464690|gb|ADX76843.1| radical SAM enzyme, Cfr family [Staphylococcus pseudintermedius
ED99]
Length = 364
Score = 204 bits (519), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 115/327 (35%), Positives = 186/327 (56%), Gaps = 25/327 (7%)
Query: 31 IWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHSVV-DSSDDVTTKLLVKLQNG 89
I++++ + ++E +L A LL F +TL +VV S D T K L +LQ+G
Sbjct: 46 IYEWLYDKRVDSFEEMTNLSKALRQLLADHFT--ITTLATVVRQESRDGTIKFLFELQDG 103
Query: 90 GFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGE 149
+E V+MR+D +++C+++QVGC++GC FCA+ G K NL +GE
Sbjct: 104 YTIETVLMRHDYG--------------NSVCVTTQVGCRIGCTFCASTLGGLKRNLEAGE 149
Query: 150 IVEQLVHASRL-----SNIRNVVFMGMGEPLNNYAALVEAVRIMTG-LPFQVSPKRITVS 203
IV Q++ + + ++V MG+GEP NY +++ ++I+ + + ITVS
Sbjct: 150 IVSQVLTVQKALDETDERVSSIVIMGIGEPFENYDEMMDFLKIVNDDHSLNIGARHITVS 209
Query: 204 TVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQ 263
T GIV I F + +N AVSLHA ++R ++MP RA+ ++KLM A++ YQ+ +++
Sbjct: 210 TSGIVPRIYDFADESLQINFAVSLHAANNEIRSKLMPINRAYDVDKLMEAIQYYQEKTKR 269
Query: 264 KIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQK 323
+I EY + GVND+ +HA +L KL++ VNLIP N + + +T DD + F+K
Sbjct: 270 RITFEYGLFGGVNDQLEHARELAKLIKPLNCHVNLIPVNHVPERNYVKTPKDD-IFKFEK 328
Query: 324 ILRGSYNIRTTVRKQMGQDISGACGQL 350
L+ I T+R++ G DI ACGQL
Sbjct: 329 ELK-KLGINATIRREQGADIDAACGQL 354
>gi|345009644|ref|YP_004811998.1| ribosomal RNA large subunit methyltransferase N [Streptomyces
violaceusniger Tu 4113]
gi|344035993|gb|AEM81718.1| Ribosomal RNA large subunit methyltransferase N [Streptomyces
violaceusniger Tu 4113]
Length = 368
Score = 204 bits (519), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 128/351 (36%), Positives = 191/351 (54%), Gaps = 41/351 (11%)
Query: 18 FEKAGIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHSVVDSSDD 77
F + + +H+ +YV ++P +W + +P+AA L + P ++ + DD
Sbjct: 42 FRASQVSRHYFA---RYV-DDP-AQWSD---IPAAAREKLAAGLLPELMSVVRHISCDDD 93
Query: 78 VTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATG 137
T K L +L +G VE+V+MRY R T+CISSQ GC M C FCATG
Sbjct: 94 TTRKTLWRLFDGTLVESVLMRYPD--------------RVTMCISSQAGCGMNCPFCATG 139
Query: 138 TMGFKSNLSSGEIVEQLVHASRL----------SNIRNVVFMGMGEPLNNYAALVEAVRI 187
G NLS+ EIV Q+V R + + N+VFMGMGEPL NY +V A+R
Sbjct: 140 QAGLDRNLSTAEIVHQIVDGMRALRDGEIPGGPARLSNIVFMGMGEPLANYNRVVGAIRR 199
Query: 188 MT-----GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAA 242
+T GL VS + ITVSTVG+V A+ +F + LAVSLHAP ++R ++P
Sbjct: 200 LTDPEPDGL--GVSQRGITVSTVGLVPAMLRFADEGFKCRLAVSLHAPDDELRDTLVPVN 257
Query: 243 RAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFN 302
+ + ++++A EY + S +++ IEY ++ +ND+ A LG+LL+ +V VNLIP N
Sbjct: 258 TRWKVREVLDAAWEYAEKSGRRVSIEYALIKDINDQAWRADLLGRLLKGRRVHVNLIPLN 317
Query: 303 PIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVN 353
P S++ S + +F L ++ + TVR GQ+I GACGQL +
Sbjct: 318 PTPG-SKWTASRPEDEKAFVAALE-AHGVPVTVRDTRGQEIDGACGQLAAS 366
>gi|440750150|ref|ZP_20929394.1| Ribosomal RNA large subunit methyltransferase N [Mariniradius
saccharolyticus AK6]
gi|436481191|gb|ELP37372.1| Ribosomal RNA large subunit methyltransferase N [Mariniradius
saccharolyticus AK6]
Length = 355
Score = 204 bits (519), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 125/342 (36%), Positives = 182/342 (53%), Gaps = 34/342 (9%)
Query: 19 EKAGIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHSVVD---SS 75
EK + +W ++N +D+ ++ +L+ F S H VD S
Sbjct: 26 EKKFRAKQVFEWLWNKSLKN----FDDMSNISKETREMLKEHF----SINHIHVDLMQHS 77
Query: 76 DDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCA 135
D T K VKL +G VE+V++ P R T C+SSQVGC + CNFCA
Sbjct: 78 SDGTIKNAVKLYDGKIVESVLI--------------PTSKRITACVSSQVGCSLDCNFCA 123
Query: 136 TGTMGFKSNLSSGEIVEQLVHASRLSN------IRNVVFMGMGEPLNNYAALVEAV-RIM 188
T + NL+ EI +Q+V + + N+VFMGMGEPL NYA +VEA+ +I
Sbjct: 124 TARLKRMRNLNPDEIYDQVVAIKEEAETYFNRPLTNIVFMGMGEPLLNYANVVEAIDKIT 183
Query: 189 TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLE 248
+ ++ +RIT+STVGI I K D NLA+SLH+ + + R ++MP + PLE
Sbjct: 184 SPEGLGMAARRITLSTVGIPKMIKKMADDEVKFNLAISLHSAINETRSRLMPINDSNPLE 243
Query: 249 KLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVS 308
L ALK + + +++K+ EY++ DG+ND+E HA L K + VN+I +NPI
Sbjct: 244 DLAEALKYWYQKTKRKVTYEYVIWDGINDDESHAKALAKFCKIIPSKVNIIQYNPIDE-G 302
Query: 309 QFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 350
+FR +S + V + +IL + I VRK GQDI ACGQL
Sbjct: 303 EFRQASQEAVDMYVRILEQN-GIVAKVRKSRGQDIDAACGQL 343
>gi|254513997|ref|ZP_05126058.1| radical SAM enzyme, Cfr family [gamma proteobacterium NOR5-3]
gi|219676240|gb|EED32605.1| radical SAM enzyme, Cfr family [gamma proteobacterium NOR5-3]
Length = 381
Score = 204 bits (519), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 130/363 (35%), Positives = 203/363 (55%), Gaps = 35/363 (9%)
Query: 12 GIIRAEFEK----AGIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTST 67
G+ R + E G K+ + K++ C++ +L A L + +
Sbjct: 18 GMSRTQLEDFFLGLGEKRFRAQQLMKWMHHQGECDFSAMSNLGKALRERLAAIAEVRPPP 77
Query: 68 LHSVVDSSDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGC 127
+ S DSSD T K LV++ GG VE V++ P G R+TLC+SSQVGC
Sbjct: 78 VESQHDSSDG-TRKWLVRVDGGGLVETVLI--------------PDGNRATLCVSSQVGC 122
Query: 128 KMGCNFCATGTMGFKSNLSSGEIVEQL------VHASRLSNIR---NVVFMGMGEPLNNY 178
+ C+FC+TG GF+ +LS+ EI+ Q+ A + N R NVV MGMGEPL N+
Sbjct: 123 SLDCSFCSTGKQGFQRDLSAAEIIGQVWLAINSYDAFKSGNGRVVTNVVMMGMGEPLLNF 182
Query: 179 AALVEAVRI-MTGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQ 237
+V A+ + M L + +S +R+T+ST G+V A++K +++ +LAVSLHAP ++R Q
Sbjct: 183 DNVVTAMDLMMDDLGYGISKRRVTLSTSGVVPALDKL-AEVSEASLAVSLHAPNDELRNQ 241
Query: 238 IMPAARAFPLEKLMNALKEY---QKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQV 294
++P R +P+ +L+++ + Y QK+ ++ + IEY ++ GVND+ A +L LL F
Sbjct: 242 LVPVNRRYPIAQLLDSARRYIDAQKDKKRVVTIEYTLMAGVNDQPDQARELATLLADFPC 301
Query: 295 VVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNL 354
+NLIPFNP + S + S + VS F ++L + + TVR G DI ACGQLV ++
Sbjct: 302 KINLIPFNPFPN-SGYERPSGNAVSRFWQVLVDAGFV-VTVRTTRGDDIDAACGQLVGDV 359
Query: 355 PDK 357
D+
Sbjct: 360 VDR 362
>gi|220935219|ref|YP_002514118.1| radical SAM protein [Thioalkalivibrio sulfidophilus HL-EbGr7]
gi|219996529|gb|ACL73131.1| radical SAM protein [Thioalkalivibrio sulfidophilus HL-EbGr7]
Length = 376
Score = 204 bits (519), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 118/300 (39%), Positives = 170/300 (56%), Gaps = 33/300 (11%)
Query: 74 SSDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNF 133
+S D T K L++L +G +E V + P R TLC+SSQVGC + C F
Sbjct: 76 ASADGTHKWLLRLDDGNCIETVFI--------------PEKDRGTLCVSSQVGCALDCTF 121
Query: 134 CATGTMGFKSNLSSGEIVEQLVHASRL-------------SNIRNVVFMGMGEPLNNYAA 180
C+T GF NLSS EIV QL A+R + NVV MGMGEPL N+
Sbjct: 122 CSTARQGFNRNLSSAEIVGQLWLANRRLAPERTVAGKAPERVVSNVVLMGMGEPLLNFDN 181
Query: 181 LVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIM 239
+V+A+R+M + +S +R+T+ST GIV A+++ L + LAVSLHAP +R +++
Sbjct: 182 VVDAMRLMLDDNAYGLSKRRVTLSTSGIVPAMDRLKETL-DVALAVSLHAPNDALRDELV 240
Query: 240 PAARAFPLEKLMNALKEY--QKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVN 297
P R +P+ +L++A + Y ++ Q+I EY+ML+GVND +HA QL LL +N
Sbjct: 241 PINRKYPIAELLDACRRYVREERHHQRITFEYVMLEGVNDSPEHARQLIALLRDVPCKIN 300
Query: 298 LIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDK 357
LIPFNP +++R S D + FQ++L + T R+ G DI ACGQLV + D+
Sbjct: 301 LIPFNPFPE-TRYRRSGDAAIRRFQEML-ANAGYTTITRRTRGDDIDAACGQLVGKVADR 358
>gi|296133296|ref|YP_003640543.1| radical SAM enzyme, Cfr family [Thermincola potens JR]
gi|296031874|gb|ADG82642.1| radical SAM enzyme, Cfr family [Thermincola potens JR]
Length = 356
Score = 204 bits (518), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 111/279 (39%), Positives = 166/279 (59%), Gaps = 19/279 (6%)
Query: 75 SDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFC 134
S D TTK L +L +G VE V ++++ +++C+S+QVGCKMGC FC
Sbjct: 75 SRDGTTKYLFELADGNTVETVFLKHNYG--------------NSVCVSTQVGCKMGCLFC 120
Query: 135 ATGTMGFKSNLSSGEIVEQL--VHASRLSNIRNVVFMGMGEPLNNYAALVEAVRIMTG-L 191
A+ GF NLS GEI +Q+ + + + +VV MG GEPL+NY A+++ +R++T
Sbjct: 121 ASTIGGFYRNLSPGEIYDQVLRIEQDKKKRVSSVVIMGSGEPLDNYEAVLKFIRLITAPY 180
Query: 192 PFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLM 251
V + IT+ST G+V I K + L L+VSLHAP ++R ++MP R +PLE+L+
Sbjct: 181 ALNVGMRHITLSTCGLVPQIYKLAEEKLALTLSVSLHAPNNELRNKLMPVNRKYPLEELI 240
Query: 252 NALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFR 311
A EY K + ++I EY ++ VND + HA +L +L++ VNLIP NP+ +R
Sbjct: 241 PACHEYIKKTGRRITFEYTLIKDVNDSQGHAEELARLIKGMLCHVNLIPVNPVAERRWYR 300
Query: 312 TSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 350
S++ V FQ IL + + TVR++MG DI ACGQL
Sbjct: 301 PSTET-VKRFQTILERN-RVPATVRREMGTDIDAACGQL 337
>gi|374337519|ref|YP_005094223.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
macedonicus ACA-DC 198]
gi|372283623|emb|CCF01815.1| Ribosomal RNA large subunit methyltransferase N [Streptococcus
macedonicus ACA-DC 198]
Length = 368
Score = 204 bits (518), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 120/359 (33%), Positives = 194/359 (54%), Gaps = 30/359 (8%)
Query: 22 GIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHSVVDSSDDVTTK 81
G K+ IW ++ ++E ++ ++L F L VV + D T K
Sbjct: 28 GEKKFRATQIWDWLYRKRVQSFEEMTNISKDCIAVLNENF-CLNPLKQRVVQEASDGTVK 86
Query: 82 LLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGF 141
L +L +G +E V+MR L ++C++SQVGC MGC+FCA+G +
Sbjct: 87 YLFELPDGMLIETVLMRQHYGL--------------SVCVTSQVGCDMGCSFCASGLIKK 132
Query: 142 KSNLSSGEIVEQLVHASRLSNIR-------NVVFMGMGEPLNNYAALVEAVRIMT---GL 191
+ +L+SGEI Q++ + + R +VV MG+GEP +NY ++ +R + GL
Sbjct: 133 QRDLTSGEITSQIMMVQKYFDERGQDERVSHVVVMGIGEPFDNYNNVLRFLRTINDDNGL 192
Query: 192 PFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLM 251
+ + ITVST G+ H I F + +NLAVSLHAP ++R QIM R+FPLEKL
Sbjct: 193 A--IGARHITVSTSGLAHKIRDFAHESLQVNLAVSLHAPNNELRSQIMRVNRSFPLEKLF 250
Query: 252 NALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVV--VNLIPFNPIGSVSQ 309
A++ Y + + +++ EYIML+ VND ++A +L L + + + +NLIP+NP+ Q
Sbjct: 251 AAIEYYVETTNRRVTFEYIMLNEVNDFPENAQELADLTKKIRKLSYINLIPYNPVSEHDQ 310
Query: 310 FRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDKISAKSTPPVTD 368
+ SS ++V++F +L+ + + VR++ G DI ACGQL N + K+ T+
Sbjct: 311 YSRSSKERVAAFYDVLKKN-GVNCVVRQEHGTDIDAACGQLRSNTMKRDRQKAVAEKTN 368
>gi|294786945|ref|ZP_06752199.1| radical SAM enzyme, Cfr family [Parascardovia denticolens F0305]
gi|315226582|ref|ZP_07868370.1| cfr family radical SAM enzyme [Parascardovia denticolens DSM 10105
= JCM 12538]
gi|294485778|gb|EFG33412.1| radical SAM enzyme, Cfr family [Parascardovia denticolens F0305]
gi|315120714|gb|EFT83846.1| cfr family radical SAM enzyme [Parascardovia denticolens DSM 10105
= JCM 12538]
Length = 404
Score = 204 bits (518), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 122/322 (37%), Positives = 181/322 (56%), Gaps = 31/322 (9%)
Query: 46 FPSLPSAAYSLLRSKFKPLTSTLHSVVDSSDDVTTKLLVKLQNGGFVEAVIMRYDSSLGK 105
+ PSA ++ F P T ++ T K L KL +G +E+V+M+Y S
Sbjct: 79 YSDFPSAKAQEVKEAFFPTLITPLLEQEADHGTTIKTLWKLFDGSRIESVLMKYPS---- 134
Query: 106 YNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHAS------R 159
R+TLCISSQVGC M C FCATG +G N+S+GEI+EQ+ +AS R
Sbjct: 135 ----------RTTLCISSQVGCGMACPFCATGQLGLTRNMSAGEILEQVRYASAQARDGR 184
Query: 160 L---SNIRNVVFMGMGEPLNNYAALVEAVRIMTGLP---FQVSPKRITVSTVGIVHAINK 213
L + + NVVFMGMGE L NY A+++A+R ++ +P F +S + IT+STVGIV I +
Sbjct: 185 LGEPTRLSNVVFMGMGEALGNYRAMMKAIRRISAMPPEGFGISARNITISTVGIVPGIRR 244
Query: 214 FHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLD 273
+ + LAVSLHAP ++R +++P + F ++++A +Y + +++ IEY ++
Sbjct: 245 LMGEGIPVRLAVSLHAPDDELRDELVPMNKRFNTTQVLDAAHDYYLATHRRVSIEYALMK 304
Query: 274 GVNDEEQHAHQLGKLLETF---QVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYN 330
G+ND+ HA L K L + VN IP NPI S++ S + + F IL +
Sbjct: 305 GINDQAVHARLLAKRLNRYGDNWAHVNPIPLNPIEG-SKWTASKPEDEARFLDILHEA-G 362
Query: 331 IRTTVRKQMGQDISGACGQLVV 352
I T+R G DI+GACGQL
Sbjct: 363 ITATLRDTRGSDINGACGQLAA 384
>gi|222056625|ref|YP_002538987.1| ribosomal RNA large subunit methyltransferase N [Geobacter daltonii
FRC-32]
gi|221565914|gb|ACM21886.1| radical SAM enzyme, Cfr family [Geobacter daltonii FRC-32]
Length = 345
Score = 204 bits (518), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 118/289 (40%), Positives = 169/289 (58%), Gaps = 19/289 (6%)
Query: 72 VDSSDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGC 131
V+SS D T K L +L +G VE+V++ P R+TLCISSQVGC MGC
Sbjct: 71 VESSADGTKKYLFRLSDGNAVESVLI--------------PDEDRNTLCISSQVGCAMGC 116
Query: 132 NFCATGTMGFKSNLSSGEIVEQLVHASRLSNIRNVVFMGMGEPLNNYAALVEAVRIMTGL 191
FC TGT NL++ EIV Q+ + +RN+VFMGMGEPL N ++ A+RI+T
Sbjct: 117 EFCLTGTFRLTRNLTTAEIVNQVCAVKKNEPVRNIVFMGMGEPLANLENVIGALRILTDP 176
Query: 192 P-FQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKL 250
FQ S +++T+ST G+V + + + + +NLA+S++A +VR +IMP R +PL++L
Sbjct: 177 DGFQFSTRKVTLSTAGLVPEMAELGAAVM-VNLAISMNATTDEVRDRIMPVNRRYPLKEL 235
Query: 251 MNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQF 310
+ A K + S++ I +EY+M+ GVND A +L +L+ TF VNLIPFN
Sbjct: 236 LAACKAFPLPSRRWITVEYVMIKGVNDSLDDAKRLVRLISTFPSKVNLIPFNEHEGC-DL 294
Query: 311 RTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDKIS 359
RT + D + F K L + + R G DIS ACGQL L DK++
Sbjct: 295 RTPTQDSIDRFHKFLLDKH-VTVITRSSRGSDISAACGQLKGRL-DKVT 341
>gi|256832241|ref|YP_003160968.1| radical SAM enzyme, Cfr family [Jonesia denitrificans DSM 20603]
gi|256685772|gb|ACV08665.1| radical SAM enzyme, Cfr family [Jonesia denitrificans DSM 20603]
Length = 376
Score = 204 bits (518), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 131/327 (40%), Positives = 182/327 (55%), Gaps = 36/327 (11%)
Query: 44 DEFPSLPSAAYS-LLRSKFKPLTSTLHSVVDSSDDVTTKLLVKLQNGGFVEAVIMRYDSS 102
DE LP+ A S L+ + PL S + ++ ++ T K L +L +G +E+V+MRY +
Sbjct: 65 DEMTDLPAQAKSELVGALMPPLVSKIRTL-EADGGATVKTLWRLFDGIKIESVLMRYPT- 122
Query: 103 LGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRL-- 160
RSTLC+SSQ GC M C FCATG MG NLS+ EIVEQ+ A+R
Sbjct: 123 -------------RSTLCVSSQAGCGMACPFCATGQMGLTRNLSTAEIVEQVRQAARALA 169
Query: 161 --------SNIRNVVFMGMGEPLNNYAALVEAVRIMTGLP---FQVSPKRITVSTVGIVH 209
+++ N+VFMGMGEPL NY AL+ AVR F +S + ITVSTVG+V
Sbjct: 170 QGEIPGGATHLNNLVFMGMGEPLANYKALMGAVRQFVAPSPQGFGLSARNITVSTVGLVP 229
Query: 210 AINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEY 269
AINK + L LA+SLHAP ++R Q++P + +++ ++A Y + +++ IEY
Sbjct: 230 AINKLAKEGLPLTLALSLHAPDDELRSQLVPINTRWTVDEALDAAYGYYDATGRRVSIEY 289
Query: 270 IMLDGVNDEEQHAHQLGKLLETF---QVVVNLIPFNPI-GSVSQFRTSSDDKVSSFQKIL 325
++ +ND A LG+ L V VN IP NP GS+ + S D F + L
Sbjct: 290 ALIKDMNDHAWRADLLGEKLNARGRGWVHVNPIPLNPTPGSI--WTASDRDVEQEFVRRL 347
Query: 326 RGSYNIRTTVRKQMGQDISGACGQLVV 352
R S+NI TT+R G DI GACGQL
Sbjct: 348 R-SHNIPTTIRDTRGSDIDGACGQLAA 373
>gi|345022595|ref|ZP_08786208.1| hypothetical protein OTW25_14956 [Ornithinibacillus scapharcae
TW25]
Length = 355
Score = 204 bits (518), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 119/342 (34%), Positives = 186/342 (54%), Gaps = 28/342 (8%)
Query: 20 KAGIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHSVVDS-SDDV 78
+ G K+ +W ++ + ++ E ++ LL+ F + TL + S D
Sbjct: 20 EKGQKRFRAEQVWDWLYKKRVRDFSEMKNVNKETIELLQENF--VIETLEEEIKQVSKDG 77
Query: 79 TTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGT 138
T K L KL +G +E V+MR++ L ++C+++QVGC +GC FCA+G
Sbjct: 78 TVKFLFKLADGNLIETVLMRFNYGL--------------SVCVTTQVGCNIGCTFCASGL 123
Query: 139 MGFKSNLSSGEIVEQLVHASRL-------SNIRNVVFMGMGEPLNNYAALVEAVRIMTGL 191
+ +L SGEIVEQ++ + + ++V MG+GEP +N+ LV +R++
Sbjct: 124 LRKSRDLDSGEIVEQIMKVQKHLDEQGKDERVSHIVVMGIGEPFDNFTNLVNFIRVVNDE 183
Query: 192 P-FQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKL 250
++ + ITVST G+ H I +F +NLA+SLHAP ++R IM RAFP+EKL
Sbjct: 184 KGLKIGQRHITVSTSGLAHKIYEFADTGLQVNLAISLHAPNDELRTSIMKINRAFPIEKL 243
Query: 251 MNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVV--VNLIPFNPIGSVS 308
M A+ Y + S ++I EYIML VND + A QL KLL + + VNLIP+N + +
Sbjct: 244 MKAVDYYLEKSNRRITYEYIMLRDVNDHKGEALQLAKLLHKKRHLSYVNLIPYNSVEEHN 303
Query: 309 QFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 350
Q++ S + +F + L+ S I + VR + G DI ACGQL
Sbjct: 304 QYQRSETAVIQAFHETLK-SKGINSGVRWENGADIDAACGQL 344
>gi|323342528|ref|ZP_08082760.1| cfr family radical SAM enzyme [Erysipelothrix rhusiopathiae ATCC
19414]
gi|336066671|ref|YP_004561529.1| ribosomal RNA large subunit methyltransferase RlmN [Erysipelothrix
rhusiopathiae str. Fujisawa]
gi|322463640|gb|EFY08834.1| cfr family radical SAM enzyme [Erysipelothrix rhusiopathiae ATCC
19414]
gi|334296617|dbj|BAK32488.1| ribosomal RNA large subunit methyltransferase RlmN [Erysipelothrix
rhusiopathiae str. Fujisawa]
Length = 347
Score = 204 bits (518), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 116/347 (33%), Positives = 190/347 (54%), Gaps = 29/347 (8%)
Query: 18 FEKAGIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHSVVDS-SD 76
FE G K+ +++++ + +D+ L + L+ F+ TL V+ +
Sbjct: 16 FESYGEKRFRAKQLFQWLYQKRVTSFDDMSDLSISLREKLKQDFE--LDTLKVVMKQVAS 73
Query: 77 DVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCAT 136
D TTK L++ +G +E V+M++D ++C++SQVGC MGC FCA+
Sbjct: 74 DETTKFLLECSDGALIETVMMKHDYGY--------------SVCVTSQVGCAMGCKFCAS 119
Query: 137 GTMGFKSNLSSGEIVEQLVHASRL-----SNIRNVVFMGMGEPLNNYAALVEAVRIMT-- 189
G + K NL+S E+V Q++ R + ++V MG+GEP +NY ++ +RI+
Sbjct: 120 GLLKKKRNLTSAEVVNQIMFVQRHLDEQDKRVSHIVVMGIGEPFDNYDNIMRFIRIVNHD 179
Query: 190 -GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLE 248
GL + + IT+ST G+ I KF + +NLA+SLHAP +R +IMP + F LE
Sbjct: 180 HGLG--IGARHITISTSGVAPVIKKFADEQTQVNLAISLHAPNDTLRSEIMPVNKMFNLE 237
Query: 249 KLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVS 308
KL +ALK YQ S +++ EYI++D VND+ A +L L+ VNLIP+N + +
Sbjct: 238 KLFDALKYYQSKSNRRLTFEYILIDNVNDQIAQAKELVALIRGMNAYVNLIPYNEVDE-N 296
Query: 309 QFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLP 355
FR + ++ + F L+ + I+ T+R++ G +I ACGQL N+
Sbjct: 297 PFRQTKPEQAAKFYDYLKRN-GIQCTIRREKGSEIDAACGQLRANVE 342
>gi|400287779|ref|ZP_10789811.1| hypothetical protein PPAM21_06876 [Psychrobacter sp. PAMC 21119]
Length = 409
Score = 204 bits (518), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 121/323 (37%), Positives = 184/323 (56%), Gaps = 37/323 (11%)
Query: 75 SDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFC 134
SDD T K + ++ G VE V++ D S K NG R TLC+SSQVGC + C+FC
Sbjct: 99 SDDGTRKWVFEVTGGSLVETVLIPADDS--KING-------RKTLCVSSQVGCALDCSFC 149
Query: 135 ATGTMGFKSNLSSGEIVEQLV------------------HASRLSNIRNVVFMGMGEPLN 176
+TG GF+ +L++ EI+ QL H+ +N+ NVV MGMGEPL
Sbjct: 150 STGKQGFERDLTAAEIIGQLWVANASYMTDENDSLENVDHSLWENNVTNVVMMGMGEPLL 209
Query: 177 NYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVR 235
NY +V ++ +M + + +S +R+T+ST G+V + + D+ + LA+SLHAP ++R
Sbjct: 210 NYKPVVGSMELMLSDHAYGLSKRRVTLSTSGVVPKMYQLAQDI-DVALAISLHAPNDELR 268
Query: 236 CQIMPAARAFPLEKLMNALKEY----QKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLET 291
+++P + +PLE+LM A + Y ++ + IEY+MLDGVND +HAHQL LL
Sbjct: 269 NELVPINKKYPLEELMAAARNYVYDVNPRHKKHVTIEYVMLDGVNDSNEHAHQLVALLGD 328
Query: 292 FQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLV 351
+NLIPFNP + + SS++++ +F IL + T+R+ G DI ACGQLV
Sbjct: 329 LPSKINLIPFNPFPH-ANYDKSSNNRIHAFSNILSEA-GFVCTIRQTRGDDIDAACGQLV 386
Query: 352 VNLPDKI--SAKSTPPVTDIEDL 372
+ D+ SA + D E++
Sbjct: 387 GQVADRTRRSAAWQQSIKDRENV 409
>gi|383764543|ref|YP_005443525.1| ribosomal RNA large subunit methyltransferase N [Caldilinea
aerophila DSM 14535 = NBRC 104270]
gi|381384811|dbj|BAM01628.1| ribosomal RNA large subunit methyltransferase N [Caldilinea
aerophila DSM 14535 = NBRC 104270]
Length = 386
Score = 204 bits (518), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 119/338 (35%), Positives = 189/338 (55%), Gaps = 36/338 (10%)
Query: 31 IWKYVIENPNCEWDEFPSLPSAAYSLLR--SKFKPLTSTLHSVVDSSDDVTTKLLVKLQN 88
IW+++ + +++ +LP A + L + PL V + D T K L +L +
Sbjct: 23 IWEWIYKRYVGDFEAMTNLPKALRARLAEIATVSPLQPIAQMVSHNRD--TLKTLFQLPD 80
Query: 89 GGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSG 148
G +EAV+M YD R TLCISSQ GC MGC FCAT G NL++G
Sbjct: 81 GQTIEAVLMLYDQ--------------RRTLCISSQAGCAMGCVFCATAQGGLARNLTTG 126
Query: 149 EIVEQLVHASRL---------------SNIRNVVFMGMGEPLNNYAALVEAVRIMTG-LP 192
EIV Q+++ +R +++ N+V MGMGEPL+NY + +A+R +T
Sbjct: 127 EIVAQVLYFARYLADPSLPPDTDVERPTHVTNIVLMGMGEPLHNYNNVWKALRRLTDPEA 186
Query: 193 FQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMN 252
F + + IT+STVG+V I++ + + LAVSLHAP ++R Q+ P +A+P+++L+
Sbjct: 187 FGLGARHITLSTVGLVPMIDRMADEGLQVGLAVSLHAPNDELRTQLTPINKAYPVDELLA 246
Query: 253 ALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRT 312
A++ Y + +++ EY ++ GVND + A ++ L+ VNLIP NP+ S F+
Sbjct: 247 AVRRYVAKTNRRVTFEYALMAGVNDSPELAQEMAHKLQGILCHVNLIPLNPVPD-SPFQP 305
Query: 313 SSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 350
+SD++ F +ILR + I TT+R + G +I+ CGQL
Sbjct: 306 TSDEETERFAQILRNA-GIPTTIRLRRGIEINAGCGQL 342
>gi|261409887|ref|YP_003246128.1| Cfr family radical SAM protein [Paenibacillus sp. Y412MC10]
gi|261286350|gb|ACX68321.1| radical SAM enzyme, Cfr family [Paenibacillus sp. Y412MC10]
Length = 353
Score = 204 bits (518), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 114/339 (33%), Positives = 191/339 (56%), Gaps = 26/339 (7%)
Query: 22 GIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHSVVDSSDDVTTK 81
G K+ +W+++ + + + LL + LT H+ +S D T K
Sbjct: 22 GHKKFRATQVWEWLYRKRVTSFSDMTDVHPECLQLLEEHYTILTLEEHTKQESLDG-TVK 80
Query: 82 LLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGF 141
L KL +G +E V+MR+ L ++C+++QVGC +GC+FCA+G +
Sbjct: 81 FLFKLVDGNLIETVLMRHKFGL--------------SVCVTTQVGCNIGCSFCASGLLKK 126
Query: 142 KSNLSSGEIVEQL----VHASRLSN---IRNVVFMGMGEPLNNYAALVEAVRIMTGLP-F 193
+LS+ EIVEQ+ +H R + + ++V MG+GEP +NY + + +R++
Sbjct: 127 SRDLSAAEIVEQVMQVQLHLDRRGSSERVSHLVVMGIGEPFDNYENMSDFIRVIKDHKGL 186
Query: 194 QVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNA 253
+ P+ ITVST G+ + I +F G+NLA+SLHAP ++R +IM +A P+EKLM A
Sbjct: 187 AIGPRHITVSTSGLANKIVEFADSDLGVNLAISLHAPNDEIRTRIMKINKAIPIEKLMAA 246
Query: 254 LKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVV--VNLIPFNPIGSVSQFR 311
+ Y + + ++I +EYI+L VND+ +HA +L +L+ + + VNLIP+NP+ SQ++
Sbjct: 247 IDYYLEKTNRRITLEYILLKDVNDQREHALELAELVGERRNLANVNLIPYNPVDEHSQYQ 306
Query: 312 TSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 350
S+ + +++F L+ I +VR + G DI ACGQL
Sbjct: 307 RSTKESITAFYDTLKKQ-GISCSVRLEHGTDIDAACGQL 344
>gi|46199876|ref|YP_005543.1| ribosomal RNA large subunit methyltransferase N [Thermus
thermophilus HB27]
gi|81567593|sp|Q72HC1.1|RLMN_THET2 RecName: Full=Probable dual-specificity RNA methyltransferase RlmN;
AltName: Full=23S rRNA
(adenine(2503)-C(2))-methyltransferase; AltName:
Full=23S rRNA m2A2503 methyltransferase; AltName:
Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=tRNA (adenine(37)-C(2))-methyltransferase;
AltName: Full=tRNA m2A37 methyltransferase
gi|46197503|gb|AAS81916.1| florfenicol resistance protein [Thermus thermophilus HB27]
Length = 355
Score = 204 bits (518), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 119/329 (36%), Positives = 179/329 (54%), Gaps = 23/329 (6%)
Query: 42 EWDEFPSLPSAAYSLLRSKFKPLTSTLHSVVDSSDDVTTKLLVKLQNGGFVEAVIMRYDS 101
++ E LP A L +++ +L S D + K L L +G EAV M Y++
Sbjct: 39 DFSEMTDLPKALREALAREWRLSEFSLVQAFPSQDG-SVKYLFTLLDGKKTEAVYMPYEN 97
Query: 102 SLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLV---HAS 158
R T+C+S+ VGC GC FCATG +GF NL++ EI++QL+ +
Sbjct: 98 --------------RKTVCLSTMVGCPAGCTFCATGALGFGRNLTAAEILDQLLTIAYHQ 143
Query: 159 RLS--NIRNVVFMGMGEPLNNYAALVEAVRIMT-GLPFQVSPKRITVSTVGIVHAINKFH 215
LS IRNVV MGMGEPL N +++AVRIM +SP+R+T+STVGI I +
Sbjct: 144 GLSPREIRNVVLMGMGEPLLNLRNVLKAVRIMLHKKALALSPRRVTLSTVGIPKGIYRLA 203
Query: 216 SDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGV 275
+ G+ LA+SLHAP + R +I+P A +P+ ++M A++ Y +++++ EY +L GV
Sbjct: 204 EEDLGVRLALSLHAPDDETRRKIIPTAHRYPIAEIMEAVRHYHAKTKRRVTFEYTLLKGV 263
Query: 276 NDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTV 335
ND A L KLL+ VNLIPFNP T ++ +++ R + T++
Sbjct: 264 NDHLWQARLLAKLLKGLSAHVNLIPFNPWEGAPVAGTPKAGVLAFAEELKR--LGVPTSI 321
Query: 336 RKQMGQDISGACGQLVVNLPDKISAKSTP 364
R GQD+ ACGQL + +P ++ P
Sbjct: 322 RWSRGQDVGAACGQLALKVPRPLTLTPLP 350
>gi|386382856|ref|ZP_10068425.1| ribosomal RNA large subunit methyltransferase N [Streptomyces
tsukubaensis NRRL18488]
gi|385669683|gb|EIF92857.1| ribosomal RNA large subunit methyltransferase N [Streptomyces
tsukubaensis NRRL18488]
Length = 368
Score = 204 bits (518), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 118/323 (36%), Positives = 176/323 (54%), Gaps = 33/323 (10%)
Query: 45 EFPSLPSAAYSLLRSKFKPLTSTLHSVVDSSDDVTTKLLVKLQNGGFVEAVIMRYDSSLG 104
++ +P+AA L ++ P ++ + DD T K L +L +G VE+V+MRY
Sbjct: 61 QWTDIPAAAREKLAAELLPELMSVVRHISCDDDTTRKTLWRLHDGTLVESVLMRYPD--- 117
Query: 105 KYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRL---- 160
R T+CISSQ GC M C FCATG G NLS+ EIV Q+V R
Sbjct: 118 -----------RVTMCISSQAGCGMNCPFCATGQAGLDRNLSTAEIVHQIVDGMRALRDG 166
Query: 161 ------SNIRNVVFMGMGEPLNNYAALVEAVRIMT-----GLPFQVSPKRITVSTVGIVH 209
+ + N+VFMGMGEPL NY +V A+R +T GL +S + ITVSTVG+V
Sbjct: 167 EVPGGPARLSNIVFMGMGEPLANYKRVVGAIRRLTDPEPDGL--GLSQRGITVSTVGLVP 224
Query: 210 AINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEY 269
A+ +F + LAVSLHAP ++R ++P + + ++++A EY + S +++ IEY
Sbjct: 225 AMQRFADEGFKCRLAVSLHAPDDELRDTLVPVNTRWKVREVLDAAWEYAEKSGRRVSIEY 284
Query: 270 IMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSY 329
++ +ND+ LG+LL+ +V VNLIP NP + +D+ + + I ++
Sbjct: 285 ALIRDINDQAWRGDLLGRLLKGKRVHVNLIPLNPTPGSKWTASRPEDEKAFVEAI--AAH 342
Query: 330 NIRTTVRKQMGQDISGACGQLVV 352
+ TVR GQ+I GACGQL
Sbjct: 343 GVPVTVRDTRGQEIDGACGQLAA 365
>gi|392950836|ref|ZP_10316391.1| hypothetical protein WQQ_04630 [Hydrocarboniphaga effusa AP103]
gi|391859798|gb|EIT70326.1| hypothetical protein WQQ_04630 [Hydrocarboniphaga effusa AP103]
Length = 441
Score = 204 bits (518), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 134/390 (34%), Positives = 198/390 (50%), Gaps = 45/390 (11%)
Query: 9 FDGGIIRAEFEKAGIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTL 68
D +RA F G K + I +++ +D ++ + ++ +F+ L
Sbjct: 35 LDREQLRAVFADMGEKPYRADQIMQWIYRRGVDSFDAMSNVSKDLRTRMQERFEIRHPEL 94
Query: 69 HSVVDSSDDVTTKLLVKLQNGGFVEAVIM---------------RY--------DSSLGK 105
+ S D T K ++KL G +E V + R+ D+S
Sbjct: 95 LAE-QLSQDGTRKWVLKLDGGNAIETVFIPEGDFESRLERVAPQRFKPSVSDESDASSAA 153
Query: 106 YNGKPRPGGP-------RSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHAS 158
+G R R TLCISSQVGC M C+FC+T G NL++ E++ Q+ A+
Sbjct: 154 ESGTTRSAVSDKSDKRYRGTLCISSQVGCAMDCSFCSTAQQGLNRNLTTAEVIAQVWFAA 213
Query: 159 RLSN--------IRNVVFMGMGEPLNNYAALVEAVRIMTG-LPFQVSPKRITVSTVGIVH 209
+ I NVVFMGMGEPL NY ++ A+ I+ F +S +R+TVST G+V
Sbjct: 214 KTLGGDFQNERVISNVVFMGMGEPLANYGQVMPAIGILQDDFGFGLSKRRVTVSTSGLVP 273
Query: 210 AINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFI-- 267
+++ +D LAVSLHAP ++R +++P R +P+ +LM A + Y ++K+ I
Sbjct: 274 FMDRLRADC-DTALAVSLHAPNDELRNRLVPINRKYPIAELMAACRRYTAGKERKMHIVY 332
Query: 268 EYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRG 327
EY+MLDGVND +HA QL KLL VNLIPFNP +Q++ S + + F ILR
Sbjct: 333 EYVMLDGVNDAPEHARQLAKLLAGMPAKVNLIPFNPFPE-AQYKRSKPEAIKRFADILRE 391
Query: 328 SYNIRTTVRKQMGQDISGACGQLVVNLPDK 357
+ I TT R+ G DI ACGQLV + K
Sbjct: 392 KH-IMTTTRRTRGDDIDAACGQLVGRVQSK 420
>gi|303246742|ref|ZP_07333019.1| radical SAM enzyme, Cfr family [Desulfovibrio fructosovorans JJ]
gi|302491759|gb|EFL51639.1| radical SAM enzyme, Cfr family [Desulfovibrio fructosovorans JJ]
Length = 350
Score = 204 bits (518), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 123/290 (42%), Positives = 167/290 (57%), Gaps = 31/290 (10%)
Query: 72 VDSSDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGC 131
V S D T K L+ L +G VE V++ P T C+S+QVGC MGC
Sbjct: 69 VSESADGTVKFLLGLSDGEAVECVLI--------------PEKDHYTACLSTQVGCAMGC 114
Query: 132 NFCATGTMGFKSNLSSGEIVEQ-------LVHASRLSNIRNVVFMGMGEPLNNYAALV-- 182
FCATG +GF+ N++ GE++ Q L+ +RN+VFMGMGEPL NY LV
Sbjct: 115 GFCATGMLGFRRNMTPGEMLGQVLVARQYLLDKGEALALRNLVFMGMGEPLLNYDNLVKT 174
Query: 183 -EAVRIMTGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL-NLAVSLHAPVQDVRCQIMP 240
EA+ GL F S +RITVST G+ N GL +LAVSLHAP Q+ R +IMP
Sbjct: 175 LEALHHPQGLDF--SGRRITVSTAGVRR--NLLELGRTGLCSLAVSLHAPTQEKRARIMP 230
Query: 241 AARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIP 300
A PL +LM L+EY ++++ EY++LDGVND + A +L +LL T + VNLI
Sbjct: 231 GAAKLPLSELMGILREYPLKPRERLTFEYLLLDGVNDADADARELVRLLSTVKAKVNLIV 290
Query: 301 FNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 350
+N + FR + +V++FQ+IL+ + I T+RK G DI+ ACGQL
Sbjct: 291 YNATPGLP-FRQPAAGRVAAFQEILK-AKGITATIRKSKGADIAAACGQL 338
>gi|225574500|ref|ZP_03783110.1| hypothetical protein RUMHYD_02577 [Blautia hydrogenotrophica DSM
10507]
gi|225038287|gb|EEG48533.1| 23S rRNA m2A2503 methyltransferase [Blautia hydrogenotrophica DSM
10507]
Length = 347
Score = 204 bits (518), Expect = 8e-50, Method: Compositional matrix adjust.
Identities = 122/338 (36%), Positives = 189/338 (55%), Gaps = 25/338 (7%)
Query: 31 IWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHSVVD---SSDDVTTKLLVKLQ 87
+++++ +DE +L L ++ PLT + VD S D T K L +L+
Sbjct: 29 LYEWIHRKLAVSYDEMTNLSKHLREKLEKEY-PLT--VLEAVDVQVSKQDGTCKYLFRLE 85
Query: 88 NGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSS 147
+G +E+V+MRY ++G +++CISSQVGC+MGC FCA+ G NL S
Sbjct: 86 DGNVIESVLMRY------HHG--------NSVCISSQVGCRMGCKFCASTIGGLTRNLRS 131
Query: 148 GEIVEQLVHASRLSNIR--NVVFMGMGEPLNNYAALVEAVRIMTGLP-FQVSPKRITVST 204
E+++Q+ RLS R NVV MG GEPL+NY L+ + ++TG +S + +TVST
Sbjct: 132 SEMLDQIYRIQRLSQERVSNVVVMGTGEPLDNYENLLRFIELLTGEDGLHISQRNLTVST 191
Query: 205 VGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQK 264
G+V I + + + LA+SLHAP + R ++MP A + ++++++A + Y + + ++
Sbjct: 192 CGLVPKIRQLADEKLQITLALSLHAPNDEKRKELMPIAYKYTMDEVLDACRYYFQKTGRR 251
Query: 265 IFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKI 324
I EY ++ GVND E+ A QL ++ VNLIP NP+ S FR S+ V +F KI
Sbjct: 252 ITFEYSLVRGVNDFEEDACQLAGQIQDINCHVNLIPVNPVKERS-FRQSTRQAVENF-KI 309
Query: 325 LRGSYNIRTTVRKQMGQDISGACGQLVVNLPDKISAKS 362
I T+R++MG DI GACGQL D+ K
Sbjct: 310 KLEKCGINVTIRREMGSDIDGACGQLRKRFIDEQKGKE 347
>gi|420237038|ref|ZP_14741511.1| ribosomal RNA large subunit methyltransferase N [Parascardovia
denticolens IPLA 20019]
gi|391879734|gb|EIT88238.1| ribosomal RNA large subunit methyltransferase N [Parascardovia
denticolens IPLA 20019]
Length = 404
Score = 204 bits (518), Expect = 8e-50, Method: Compositional matrix adjust.
Identities = 122/322 (37%), Positives = 181/322 (56%), Gaps = 31/322 (9%)
Query: 46 FPSLPSAAYSLLRSKFKPLTSTLHSVVDSSDDVTTKLLVKLQNGGFVEAVIMRYDSSLGK 105
+ PSA ++ F P T ++ T K L KL +G +E+V+M+Y S
Sbjct: 79 YSDFPSAKAQEVKEAFFPTLITPLLEQEADHGTTIKTLWKLFDGSRIESVLMKYPS---- 134
Query: 106 YNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHAS------R 159
R+TLCISSQVGC M C FCATG +G N+S+GEI+EQ+ +AS R
Sbjct: 135 ----------RTTLCISSQVGCGMACPFCATGQLGLTRNMSAGEILEQVRYASAQARDGR 184
Query: 160 L---SNIRNVVFMGMGEPLNNYAALVEAVRIMTGLP---FQVSPKRITVSTVGIVHAINK 213
L + + NVVFMGMGE L NY A+++A+R ++ +P F +S + IT+STVGIV I +
Sbjct: 185 LGEPTRLSNVVFMGMGEALGNYRAMMKAIRRISAMPPEGFGISARNITISTVGIVPGIRR 244
Query: 214 FHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLD 273
+ + LAVSLHAP ++R +++P + F ++++A +Y + +++ IEY ++
Sbjct: 245 LMGEGIPVRLAVSLHAPDDELRDELVPMNKRFNTTQVLDAAHDYYLATHRRVSIEYALMK 304
Query: 274 GVNDEEQHAHQLGKLLETF---QVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYN 330
G+ND+ HA L K L + VN IP NPI S++ S + + F IL +
Sbjct: 305 GINDQAVHARLLAKRLNHYGDNWAHVNPIPLNPIEG-SKWTASKPEDEARFLDILHEA-G 362
Query: 331 IRTTVRKQMGQDISGACGQLVV 352
I T+R G DI+GACGQL
Sbjct: 363 ITATLRDTRGSDINGACGQLAA 384
>gi|389821936|ref|ZP_10210083.1| ribosomal RNA large subunit methyltransferase N [Planococcus
antarcticus DSM 14505]
gi|388462488|gb|EIM04927.1| ribosomal RNA large subunit methyltransferase N [Planococcus
antarcticus DSM 14505]
Length = 357
Score = 204 bits (518), Expect = 8e-50, Method: Compositional matrix adjust.
Identities = 117/343 (34%), Positives = 191/343 (55%), Gaps = 26/343 (7%)
Query: 18 FEKAGIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHSVVDSSDD 77
F + G K++ +W ++ E+ E +L LL F + + +V S D
Sbjct: 17 FLENGQKKYRAEQVWDWLYIKRVTEFGEMNNLSKDCIQLLEDNF-VIRTLEETVKQESAD 75
Query: 78 VTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATG 137
T K L K+Q+G +E V+MR+ KY +++C+++QVGC +GC+FCA+G
Sbjct: 76 GTIKFLFKMQDGNLIETVLMRF-----KYG---------NSVCVTTQVGCNIGCSFCASG 121
Query: 138 TMGFKSNLSSGEIVEQLVHA-------SRLSNIRNVVFMGMGEPLNNYAALVEAVRIMTG 190
+ +L++GEIVEQ++ + + ++V MG+GEP +NYA L+ + I+
Sbjct: 122 LLKKSRDLNAGEIVEQIMQVQAHFDSQEKEERVSHIVVMGIGEPFDNYANLMGFLNIVNS 181
Query: 191 LP-FQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEK 249
+ + ITVST GIV I + + +NLA+S+HAP ++R +IM +A+P+EK
Sbjct: 182 QKGLAIGARHITVSTSGIVPKIYDYADEGLQVNLAISIHAPTNELRTRIMKINKAYPVEK 241
Query: 250 LMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVV--VNLIPFNPIGSV 307
LM ++ Y + S ++I EYIML +ND + A+QL KLLE + + VNLIP+N +
Sbjct: 242 LMASIDYYLEKSNRRITFEYIMLRDINDHVEEANQLAKLLEDKRHLSYVNLIPYNSVDEH 301
Query: 308 SQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 350
Q++ S+ + +++F L+ I VR + G DI ACGQL
Sbjct: 302 DQYQQSTPEAIAAFYDALKKK-GINCGVRHEQGADIDAACGQL 343
>gi|417300312|ref|ZP_12087531.1| radical SAM domain protein [Rhodopirellula baltica WH47]
gi|327543394|gb|EGF29819.1| radical SAM domain protein [Rhodopirellula baltica WH47]
Length = 379
Score = 204 bits (518), Expect = 8e-50, Method: Compositional matrix adjust.
Identities = 116/310 (37%), Positives = 174/310 (56%), Gaps = 22/310 (7%)
Query: 68 LHSVVDSSDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGC 127
L+ +DS D TKLL + ++G +E+VI+R + R+TLC+SSQ+GC
Sbjct: 64 LYQRMDSEIDGATKLLFETESGMLIESVILRIATG-------------RTTLCVSSQIGC 110
Query: 128 KMGCNFCATGTMGFKSNLSSGEIVEQLVHASRL-----SNIRNVVFMGMGEPLNNYAALV 182
C+FCATG MG NL++ EI++Q+V A ++ + N+VFMGMGEPL+N +
Sbjct: 111 AAACDFCATGKMGIAKNLATEEILDQVVQAGQILRGEDRRLSNIVFMGMGEPLHNEVNVT 170
Query: 183 EAVRIMTGLP-FQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPA 241
EA+ ++T F SP + VSTVG+ + + P LNLA+SLH+ Q R +I+P
Sbjct: 171 EAIELLTASDHFARSPSTVLVSTVGVPAGMLRLAKRFPNLNLALSLHSADQTTREKIIPL 230
Query: 242 ARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPF 301
+ L +L + + E Q ++ IEY+ML VND + A +L + +V VNLIP+
Sbjct: 231 GKKASLTQLHDTILEIQTIQDREFMIEYLMLRDVNDSAKDADRLIDWIGDLRVHVNLIPY 290
Query: 302 NPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLV--VNLPDKIS 359
N I + SS + SF IL+ S ++TTVR +G DI ACGQL+ N +
Sbjct: 291 NTIEASPHLHASSRPVIESFADILKAS-GLKTTVRYSLGNDIEAACGQLIRQENRQRAMQ 349
Query: 360 AKSTPPVTDI 369
A+ T +D+
Sbjct: 350 ARRTESESDL 359
>gi|384917380|ref|ZP_10017506.1| Radical SAM family enzyme (modular protein) [Methylacidiphilum
fumariolicum SolV]
gi|384525238|emb|CCG93379.1| Radical SAM family enzyme (modular protein) [Methylacidiphilum
fumariolicum SolV]
Length = 362
Score = 203 bits (517), Expect = 9e-50, Method: Compositional matrix adjust.
Identities = 106/282 (37%), Positives = 174/282 (61%), Gaps = 15/282 (5%)
Query: 73 DSSDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCN 132
+ S D T K L KL + ++E+V++ + R TLC+S+QVGC + C
Sbjct: 67 NDSQDGTKKFLWKLSDSHYIESVLIPASDCI--------ESSRRLTLCVSTQVGCPLKCG 118
Query: 133 FCATGTMGFKSNLSSGEIVEQLVHASRLSN--IRNVVFMGMGEPLNNYAALVEAVRIMTG 190
FCA+G GFK NLS GEIVEQ++ + ++ I ++VFMGMGEPL NY L++A+R++T
Sbjct: 119 FCASGLFGFKRNLSCGEIVEQVLLSEAIAKERISHIVFMGMGEPLLNYEQLIQAIRLITS 178
Query: 191 -LPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEK 249
+SP+RIT+ST GIV I + ++ LA+SLHA ++R ++MP R +PL+
Sbjct: 179 SWGLSISPRRITISTSGIVPNILRLANESLPFRLAISLHATTDELRNKLMPINRKYPLQD 238
Query: 250 LMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQ 309
L+ + + + +QKI +EYI++ GVND + +L K+ ++ + VNLI +NP+ +
Sbjct: 239 LLKSCEVFCSKRKQKITLEYILIAGVNDRMEDVERLAKIAKSLKAKVNLIAYNPVLQMPW 298
Query: 310 FRTSSDDKVSSFQKI-LRGSYNIRTTVRKQMGQDISGACGQL 350
+ + ++ F K+ ++G ++ ++R++ G+DI GACGQL
Sbjct: 299 KTPNKKEIMTFFHKLQIKG---VQVSLRQERGRDIDGACGQL 337
>gi|257880074|ref|ZP_05659727.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium 1,230,933]
gi|257882309|ref|ZP_05661962.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium 1,231,502]
gi|257885503|ref|ZP_05665156.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium 1,231,501]
gi|257891165|ref|ZP_05670818.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium 1,231,410]
gi|257893979|ref|ZP_05673632.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium 1,231,408]
gi|260560313|ref|ZP_05832489.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium C68]
gi|261208250|ref|ZP_05922923.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium TC 6]
gi|289565948|ref|ZP_06446387.1| cfr family radical SAM enzyme [Enterococcus faecium D344SRF]
gi|293563079|ref|ZP_06677545.1| radical SAM enzyme, Cfr family [Enterococcus faecium E1162]
gi|293567506|ref|ZP_06678851.1| radical SAM enzyme, Cfr family [Enterococcus faecium E1071]
gi|294615994|ref|ZP_06695821.1| radical SAM enzyme, Cfr family [Enterococcus faecium E1636]
gi|294617653|ref|ZP_06697281.1| radical SAM enzyme, Cfr family [Enterococcus faecium E1679]
gi|294623617|ref|ZP_06702455.1| radical SAM enzyme, Cfr family [Enterococcus faecium U0317]
gi|314940253|ref|ZP_07847426.1| radical SAM enzyme, Cfr family [Enterococcus faecium TX0133a04]
gi|314941689|ref|ZP_07848568.1| radical SAM enzyme, Cfr family [Enterococcus faecium TX0133C]
gi|314947667|ref|ZP_07851076.1| radical SAM enzyme, Cfr family [Enterococcus faecium TX0082]
gi|314950654|ref|ZP_07853734.1| radical SAM enzyme, Cfr family [Enterococcus faecium TX0133A]
gi|314992479|ref|ZP_07857900.1| radical SAM enzyme, Cfr family [Enterococcus faecium TX0133B]
gi|314996873|ref|ZP_07861878.1| radical SAM enzyme, Cfr family [Enterococcus faecium TX0133a01]
gi|383329602|ref|YP_005355486.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium Aus0004]
gi|389869456|ref|YP_006376879.1| Fe-S-cluster redox protein [Enterococcus faecium DO]
gi|406579734|ref|ZP_11054962.1| ribosomal RNA large subunit methyltransferase N [Enterococcus sp.
GMD4E]
gi|406582048|ref|ZP_11057181.1| ribosomal RNA large subunit methyltransferase N [Enterococcus sp.
GMD3E]
gi|406584140|ref|ZP_11059176.1| ribosomal RNA large subunit methyltransferase N [Enterococcus sp.
GMD2E]
gi|406589619|ref|ZP_11064049.1| ribosomal RNA large subunit methyltransferase N [Enterococcus sp.
GMD1E]
gi|410936165|ref|ZP_11368034.1| ribosomal RNA large subunit methyltransferase N [Enterococcus sp.
GMD5E]
gi|415899923|ref|ZP_11551718.1| radical SAM enzyme, Cfr family [Enterococcus faecium E4453]
gi|416139196|ref|ZP_11599133.1| radical SAM enzyme, Cfr family [Enterococcus faecium E4452]
gi|424792617|ref|ZP_18218830.1| 23S rRNA methyltransferase [Enterococcus faecium V689]
gi|424797774|ref|ZP_18223326.1| 23S rRNA methyltransferase [Enterococcus faecium S447]
gi|424826294|ref|ZP_18251204.1| 23S rRNA methyltransferase [Enterococcus faecium R501]
gi|424857869|ref|ZP_18281953.1| 23S rRNA methyltransferase [Enterococcus faecium R499]
gi|424868563|ref|ZP_18292305.1| 23S rRNA methyltransferase [Enterococcus faecium R497]
gi|424950906|ref|ZP_18366047.1| 23S rRNA methyltransferase [Enterococcus faecium R496]
gi|424955308|ref|ZP_18370150.1| 23S rRNA methyltransferase [Enterococcus faecium R494]
gi|424958812|ref|ZP_18373437.1| 23S rRNA methyltransferase [Enterococcus faecium R446]
gi|424961262|ref|ZP_18375717.1| 23S rRNA methyltransferase [Enterococcus faecium P1986]
gi|424964863|ref|ZP_18378925.1| 23S rRNA methyltransferase [Enterococcus faecium P1190]
gi|424967212|ref|ZP_18380920.1| 23S rRNA methyltransferase [Enterococcus faecium P1140]
gi|424971640|ref|ZP_18385067.1| 23S rRNA methyltransferase [Enterococcus faecium P1139]
gi|424973752|ref|ZP_18387017.1| 23S rRNA methyltransferase [Enterococcus faecium P1137]
gi|424977232|ref|ZP_18390264.1| 23S rRNA methyltransferase [Enterococcus faecium P1123]
gi|424981352|ref|ZP_18394088.1| 23S rRNA methyltransferase [Enterococcus faecium ERV99]
gi|424984783|ref|ZP_18397301.1| 23S rRNA methyltransferase [Enterococcus faecium ERV69]
gi|424989513|ref|ZP_18401777.1| 23S rRNA methyltransferase [Enterococcus faecium ERV38]
gi|424991169|ref|ZP_18403337.1| 23S rRNA methyltransferase [Enterococcus faecium ERV26]
gi|424994655|ref|ZP_18406586.1| 23S rRNA methyltransferase [Enterococcus faecium ERV168]
gi|424999328|ref|ZP_18410955.1| 23S rRNA methyltransferase [Enterococcus faecium ERV165]
gi|425000596|ref|ZP_18412152.1| 23S rRNA methyltransferase [Enterococcus faecium ERV161]
gi|425005055|ref|ZP_18416333.1| 23S rRNA methyltransferase [Enterococcus faecium ERV102]
gi|425008633|ref|ZP_18419703.1| 23S rRNA methyltransferase [Enterococcus faecium ERV1]
gi|425011933|ref|ZP_18422790.1| 23S rRNA methyltransferase [Enterococcus faecium E422]
gi|425013474|ref|ZP_18424204.1| 23S rRNA methyltransferase [Enterococcus faecium E417]
gi|425017031|ref|ZP_18427567.1| 23S rRNA methyltransferase [Enterococcus faecium C621]
gi|425020688|ref|ZP_18430983.1| 23S rRNA methyltransferase [Enterococcus faecium C497]
gi|425023764|ref|ZP_18433865.1| 23S rRNA methyltransferase [Enterococcus faecium C1904]
gi|425035059|ref|ZP_18439911.1| 23S rRNA methyltransferase [Enterococcus faecium 514]
gi|425038929|ref|ZP_18443507.1| 23S rRNA methyltransferase [Enterococcus faecium 513]
gi|425042369|ref|ZP_18446709.1| 23S rRNA methyltransferase [Enterococcus faecium 511]
gi|425045819|ref|ZP_18449888.1| 23S rRNA methyltransferase [Enterococcus faecium 510]
gi|425049029|ref|ZP_18452905.1| 23S rRNA methyltransferase [Enterococcus faecium 509]
gi|425053288|ref|ZP_18456841.1| 23S rRNA methyltransferase [Enterococcus faecium 506]
gi|425058808|ref|ZP_18462183.1| 23S rRNA methyltransferase [Enterococcus faecium 504]
gi|425059772|ref|ZP_18463091.1| 23S rRNA methyltransferase [Enterococcus faecium 503]
gi|427395601|ref|ZP_18888523.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
durans FB129-CNAB-4]
gi|430820558|ref|ZP_19439186.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E0045]
gi|430823875|ref|ZP_19442444.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E0120]
gi|430826729|ref|ZP_19444903.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E0164]
gi|430829314|ref|ZP_19447410.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E0269]
gi|430832244|ref|ZP_19450291.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E0333]
gi|430845039|ref|ZP_19462935.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E1050]
gi|430847340|ref|ZP_19465179.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E1133]
gi|430850546|ref|ZP_19468306.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E1185]
gi|430853708|ref|ZP_19471435.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E1258]
gi|430856549|ref|ZP_19474235.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E1392]
gi|430863746|ref|ZP_19480191.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E1573]
gi|430866956|ref|ZP_19482182.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E1574]
gi|430924609|ref|ZP_19485396.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E1575]
gi|430961994|ref|ZP_19487277.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E1576]
gi|431012240|ref|ZP_19490031.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E1578]
gi|431204832|ref|ZP_19500709.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E1620]
gi|431238555|ref|ZP_19503424.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E1622]
gi|431260023|ref|ZP_19505529.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E1623]
gi|431309281|ref|ZP_19508662.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E1626]
gi|431381565|ref|ZP_19511167.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E1627]
gi|431451877|ref|ZP_19514057.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E1630]
gi|431517056|ref|ZP_19516446.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E1634]
gi|431549988|ref|ZP_19519301.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E1731]
gi|431682644|ref|ZP_19524607.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E1904]
gi|431744636|ref|ZP_19533504.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E2071]
gi|431745283|ref|ZP_19534132.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E2134]
gi|431749688|ref|ZP_19538425.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E2297]
gi|431755622|ref|ZP_19544271.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E2883]
gi|431760784|ref|ZP_19549378.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E3346]
gi|431765743|ref|ZP_19554246.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E4215]
gi|431768217|ref|ZP_19556657.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E1321]
gi|431771402|ref|ZP_19559786.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E1644]
gi|431774199|ref|ZP_19562511.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E2369]
gi|431777322|ref|ZP_19565576.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E2560]
gi|431779992|ref|ZP_19568181.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E4389]
gi|431783071|ref|ZP_19571195.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E6012]
gi|431786532|ref|ZP_19574544.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E6045]
gi|447913545|ref|YP_007394957.1| Ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium NRRL B-2354]
gi|257814302|gb|EEV43060.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium 1,230,933]
gi|257817967|gb|EEV45295.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium 1,231,502]
gi|257821359|gb|EEV48489.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium 1,231,501]
gi|257827525|gb|EEV54151.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium 1,231,410]
gi|257830358|gb|EEV56965.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium 1,231,408]
gi|260073658|gb|EEW61984.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium C68]
gi|260077507|gb|EEW65225.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium TC 6]
gi|289162232|gb|EFD10093.1| cfr family radical SAM enzyme [Enterococcus faecium D344SRF]
gi|291589749|gb|EFF21552.1| radical SAM enzyme, Cfr family [Enterococcus faecium E1071]
gi|291591180|gb|EFF22862.1| radical SAM enzyme, Cfr family [Enterococcus faecium E1636]
gi|291596117|gb|EFF27382.1| radical SAM enzyme, Cfr family [Enterococcus faecium E1679]
gi|291596943|gb|EFF28156.1| radical SAM enzyme, Cfr family [Enterococcus faecium U0317]
gi|291604993|gb|EFF34461.1| radical SAM enzyme, Cfr family [Enterococcus faecium E1162]
gi|313589016|gb|EFR67861.1| radical SAM enzyme, Cfr family [Enterococcus faecium TX0133a01]
gi|313592939|gb|EFR71784.1| radical SAM enzyme, Cfr family [Enterococcus faecium TX0133B]
gi|313597201|gb|EFR76046.1| radical SAM enzyme, Cfr family [Enterococcus faecium TX0133A]
gi|313599461|gb|EFR78304.1| radical SAM enzyme, Cfr family [Enterococcus faecium TX0133C]
gi|313640573|gb|EFS05153.1| radical SAM enzyme, Cfr family [Enterococcus faecium TX0133a04]
gi|313645908|gb|EFS10488.1| radical SAM enzyme, Cfr family [Enterococcus faecium TX0082]
gi|364089102|gb|EHM31819.1| radical SAM enzyme, Cfr family [Enterococcus faecium E4453]
gi|364090753|gb|EHM33298.1| radical SAM enzyme, Cfr family [Enterococcus faecium E4452]
gi|378939296|gb|AFC64368.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium Aus0004]
gi|388534705|gb|AFK59897.1| Fe-S-cluster redox enzyme [Enterococcus faecium DO]
gi|402917477|gb|EJX38264.1| 23S rRNA methyltransferase [Enterococcus faecium V689]
gi|402920323|gb|EJX40847.1| 23S rRNA methyltransferase [Enterococcus faecium S447]
gi|402924452|gb|EJX44661.1| 23S rRNA methyltransferase [Enterococcus faecium R501]
gi|402927865|gb|EJX47789.1| 23S rRNA methyltransferase [Enterococcus faecium R499]
gi|402932138|gb|EJX51671.1| 23S rRNA methyltransferase [Enterococcus faecium R496]
gi|402934375|gb|EJX53731.1| 23S rRNA methyltransferase [Enterococcus faecium R494]
gi|402936959|gb|EJX56104.1| 23S rRNA methyltransferase [Enterococcus faecium R497]
gi|402938962|gb|EJX57924.1| 23S rRNA methyltransferase [Enterococcus faecium R446]
gi|402944252|gb|EJX62679.1| 23S rRNA methyltransferase [Enterococcus faecium P1986]
gi|402945450|gb|EJX63796.1| 23S rRNA methyltransferase [Enterococcus faecium P1190]
gi|402954876|gb|EJX72458.1| 23S rRNA methyltransferase [Enterococcus faecium P1140]
gi|402958008|gb|EJX75362.1| 23S rRNA methyltransferase [Enterococcus faecium P1137]
gi|402958591|gb|EJX75898.1| 23S rRNA methyltransferase [Enterococcus faecium P1139]
gi|402963945|gb|EJX80782.1| 23S rRNA methyltransferase [Enterococcus faecium ERV99]
gi|402966747|gb|EJX83360.1| 23S rRNA methyltransferase [Enterococcus faecium P1123]
gi|402967916|gb|EJX84429.1| 23S rRNA methyltransferase [Enterococcus faecium ERV69]
gi|402968627|gb|EJX85099.1| 23S rRNA methyltransferase [Enterococcus faecium ERV38]
gi|402977520|gb|EJX93331.1| 23S rRNA methyltransferase [Enterococcus faecium ERV26]
gi|402979267|gb|EJX94943.1| 23S rRNA methyltransferase [Enterococcus faecium ERV165]
gi|402979458|gb|EJX95124.1| 23S rRNA methyltransferase [Enterococcus faecium ERV168]
gi|402987699|gb|EJY02744.1| 23S rRNA methyltransferase [Enterococcus faecium ERV102]
gi|402988903|gb|EJY03874.1| 23S rRNA methyltransferase [Enterococcus faecium ERV161]
gi|402991921|gb|EJY06658.1| 23S rRNA methyltransferase [Enterococcus faecium ERV1]
gi|402995225|gb|EJY09702.1| 23S rRNA methyltransferase [Enterococcus faecium E422]
gi|403000887|gb|EJY14971.1| 23S rRNA methyltransferase [Enterococcus faecium E417]
gi|403005671|gb|EJY19361.1| 23S rRNA methyltransferase [Enterococcus faecium C621]
gi|403008795|gb|EJY22286.1| 23S rRNA methyltransferase [Enterococcus faecium C497]
gi|403008869|gb|EJY22355.1| 23S rRNA methyltransferase [Enterococcus faecium C1904]
gi|403018127|gb|EJY30834.1| 23S rRNA methyltransferase [Enterococcus faecium 513]
gi|403018855|gb|EJY31508.1| 23S rRNA methyltransferase [Enterococcus faecium 514]
gi|403023631|gb|EJY35869.1| 23S rRNA methyltransferase [Enterococcus faecium 511]
gi|403026258|gb|EJY38259.1| 23S rRNA methyltransferase [Enterococcus faecium 510]
gi|403029162|gb|EJY40932.1| 23S rRNA methyltransferase [Enterococcus faecium 509]
gi|403030899|gb|EJY42552.1| 23S rRNA methyltransferase [Enterococcus faecium 506]
gi|403037510|gb|EJY48780.1| 23S rRNA methyltransferase [Enterococcus faecium 504]
gi|403043242|gb|EJY54163.1| 23S rRNA methyltransferase [Enterococcus faecium 503]
gi|404455065|gb|EKA01934.1| ribosomal RNA large subunit methyltransferase N [Enterococcus sp.
GMD4E]
gi|404458710|gb|EKA05118.1| ribosomal RNA large subunit methyltransferase N [Enterococcus sp.
GMD3E]
gi|404464533|gb|EKA10061.1| ribosomal RNA large subunit methyltransferase N [Enterococcus sp.
GMD2E]
gi|404470522|gb|EKA15147.1| ribosomal RNA large subunit methyltransferase N [Enterococcus sp.
GMD1E]
gi|410735406|gb|EKQ77318.1| ribosomal RNA large subunit methyltransferase N [Enterococcus sp.
GMD5E]
gi|425723590|gb|EKU86477.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
durans FB129-CNAB-4]
gi|430439433|gb|ELA49785.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E0045]
gi|430441908|gb|ELA51979.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E0120]
gi|430444754|gb|ELA54572.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E0164]
gi|430480235|gb|ELA57423.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E0333]
gi|430481220|gb|ELA58381.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E0269]
gi|430495873|gb|ELA71993.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E1050]
gi|430535414|gb|ELA75822.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E1185]
gi|430537283|gb|ELA77627.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E1133]
gi|430540261|gb|ELA80471.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E1258]
gi|430544309|gb|ELA84347.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E1392]
gi|430547806|gb|ELA87720.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E1573]
gi|430551006|gb|ELA90776.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E1574]
gi|430553808|gb|ELA93489.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E1575]
gi|430555904|gb|ELA95432.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E1576]
gi|430559751|gb|ELA99075.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E1578]
gi|430571355|gb|ELB10271.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E1620]
gi|430572256|gb|ELB11118.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E1622]
gi|430576762|gb|ELB15387.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E1623]
gi|430579210|gb|ELB17733.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E1626]
gi|430581927|gb|ELB20365.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E1627]
gi|430585056|gb|ELB23359.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E1630]
gi|430585610|gb|ELB23889.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E1634]
gi|430590676|gb|ELB28730.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E1731]
gi|430598550|gb|ELB36287.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E1904]
gi|430605379|gb|ELB42784.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E2071]
gi|430610719|gb|ELB47850.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E2134]
gi|430611275|gb|ELB48377.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E2297]
gi|430616844|gb|ELB53739.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E2883]
gi|430623454|gb|ELB60146.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E3346]
gi|430627682|gb|ELB64165.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E4215]
gi|430629601|gb|ELB65997.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E1321]
gi|430633466|gb|ELB69632.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E1644]
gi|430634601|gb|ELB70719.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E2369]
gi|430639434|gb|ELB75307.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E2560]
gi|430641073|gb|ELB76893.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E4389]
gi|430645425|gb|ELB80940.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E6045]
gi|430646093|gb|ELB81588.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E6012]
gi|445189254|gb|AGE30896.1| Ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium NRRL B-2354]
Length = 355
Score = 203 bits (517), Expect = 9e-50, Method: Compositional matrix adjust.
Identities = 122/356 (34%), Positives = 187/356 (52%), Gaps = 30/356 (8%)
Query: 18 FEKAGIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKF--KPLTSTLHSVVDSS 75
F + G K+ +W+++ + + E +L L F PL VV +
Sbjct: 18 FIENGEKKFRAAQVWEWLYQKRVSNFTEMTNLSKQLIEKLSEHFIINPLKQM---VVQEA 74
Query: 76 DDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCA 135
D T K L +L + +E V+MR + L ++C+++QVGC +GC FCA
Sbjct: 75 SDGTVKYLFELPDKNMIETVLMRQEYGL--------------SVCVTTQVGCNIGCTFCA 120
Query: 136 TGTMGFKSNLSSGEIVEQLVHASRLSNIRN-------VVFMGMGEPLNNYAALVEAVRIM 188
+G + +L++GEIV Q++ + RN VV MG+GEP +NY +++ + I+
Sbjct: 121 SGLLKKNRDLTAGEIVAQIMMVQHYFDERNLGERVSHVVVMGIGEPFDNYDNVMDFLHII 180
Query: 189 TGLP-FQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPL 247
+ + ITVST G+ H I +F ++ +NLA+SLHAP +VR IM R+FP+
Sbjct: 181 NDAKGLAIGARHITVSTSGLAHKIKEFANNGLQVNLAISLHAPNNEVRTSIMRINRSFPI 240
Query: 248 EKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQ--VVVNLIPFNPIG 305
EKLM A+ EY + + ++I EYIML+ VND +HA QL LL+ + VNLIP+NP+
Sbjct: 241 EKLMEAVDEYLEKTNRRITFEYIMLNQVNDRPEHAQQLADLLKDKKKLAYVNLIPYNPVS 300
Query: 306 SVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDKISAK 361
Q+ S V F +L+ + + +RK+ G DI ACGQL K AK
Sbjct: 301 EHDQYSRSPKADVLRFYDVLKKN-GVNCVIRKEHGTDIDAACGQLRSKQMKKTVAK 355
>gi|295836269|ref|ZP_06823202.1| cfr family radical SAM enzyme [Streptomyces sp. SPB74]
gi|197697366|gb|EDY44299.1| cfr family radical SAM enzyme [Streptomyces sp. SPB74]
Length = 369
Score = 203 bits (517), Expect = 9e-50, Method: Compositional matrix adjust.
Identities = 125/350 (35%), Positives = 187/350 (53%), Gaps = 41/350 (11%)
Query: 18 FEKAGIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHSVVDSSDD 77
F + QH+ +Y ++P +W + +P+AA L+ + P ++ + DD
Sbjct: 43 FRAKQLSQHYFA---RYA-QDP-AQWTD---IPAAARGRLQEELLPELMSVVRHISCDDD 94
Query: 78 VTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATG 137
T K L +L +G VE+V+MRY R T+CISSQ GC M C FCATG
Sbjct: 95 TTRKTLWRLFDGTLVESVLMRYPD--------------RVTMCISSQAGCGMNCPFCATG 140
Query: 138 TMGFKSNLSSGEIVEQLVHASRL----------SNIRNVVFMGMGEPLNNYAALVEAVRI 187
G NLS+ EIV Q+V R + + N+VFMGMGEPL NY +V A+R
Sbjct: 141 QAGLDRNLSTAEIVHQIVEGMRALRDGEIPGGPARLSNIVFMGMGEPLANYNRVVGAIRR 200
Query: 188 MT-----GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAA 242
+T GL +S + ITVSTVG+V AI++F + LAVSLHAP ++R ++P
Sbjct: 201 LTDPEPDGL--GLSQRGITVSTVGLVPAIHRFADEGFKCRLAVSLHAPDDELRDTLVPVN 258
Query: 243 RAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFN 302
+ + ++++A EY + S +++ IEY ++ +ND+ LG+LL+ +V VNLIP N
Sbjct: 259 TRWKVREVLDAAWEYAEKSGRRVSIEYALIRDINDQAWRGDLLGRLLKNKRVHVNLIPLN 318
Query: 303 PIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVV 352
P + +D+ + I ++ + TVR GQ+I GACGQL
Sbjct: 319 PTPGSRWTASRPEDERAFVDAI--AAHGVPVTVRDTRGQEIDGACGQLAA 366
>gi|320546296|ref|ZP_08040616.1| cfr family radical SAM enzyme [Streptococcus equinus ATCC 9812]
gi|320449073|gb|EFW89796.1| cfr family radical SAM enzyme [Streptococcus equinus ATCC 9812]
Length = 366
Score = 203 bits (517), Expect = 9e-50, Method: Compositional matrix adjust.
Identities = 118/346 (34%), Positives = 190/346 (54%), Gaps = 34/346 (9%)
Query: 22 GIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKF--KPLTSTLHSVVDSSDDVT 79
G K+ IW ++ ++E ++ ++L F PL +V + D T
Sbjct: 28 GEKKFRATQIWDWLYRKRVQSFEEMTNISKDFIAILNENFCVNPLK---QRIVQEASDGT 84
Query: 80 TKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTM 139
K L +L +G +E V+MR L ++C++SQVGC MGC+FCA+G +
Sbjct: 85 VKYLFELPDGMLIETVLMRQHYGL--------------SVCVTSQVGCNMGCSFCASGLI 130
Query: 140 GFKSNLSSGEIVEQLVHASRLSNIR-------NVVFMGMGEPLNNYAALVEAVRIMT--- 189
+ +L+SGEI Q++ + + R +VV MG+GEP +NY ++ VR +
Sbjct: 131 KKQRDLTSGEITSQIMMVQKYFDERGQDERVSHVVVMGIGEPFDNYDNVLRFVRTINNDN 190
Query: 190 GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEK 249
GL + + IT+ST G+ H I +F + +NLAVSLHAP ++R QIM R+FPLEK
Sbjct: 191 GLA--IGARHITISTSGLAHKIREFAHESLQVNLAVSLHAPNNELRSQIMRVNRSFPLEK 248
Query: 250 LMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVV--VNLIPFNPIGSV 307
L A++ Y + + +++ EYIML+ VND ++A +L L + + + +NLIP+NP+
Sbjct: 249 LFAAIEYYVETTNRRVTFEYIMLNDVNDSPENAQELADLTKKIRKLSYINLIPYNPVSEH 308
Query: 308 SQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVN 353
Q+ SS + V++F +L+ + + VR++ G DI ACGQL N
Sbjct: 309 DQYSRSSKEHVAAFYDVLKKN-GVNCVVRQEHGTDIDAACGQLRSN 353
>gi|422732627|ref|ZP_16788958.1| radical SAM enzyme, Cfr family [Enterococcus faecalis TX0645]
gi|315161444|gb|EFU05461.1| radical SAM enzyme, Cfr family [Enterococcus faecalis TX0645]
Length = 357
Score = 203 bits (517), Expect = 9e-50, Method: Compositional matrix adjust.
Identities = 120/345 (34%), Positives = 186/345 (53%), Gaps = 30/345 (8%)
Query: 18 FEKAGIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHSVVDSSDD 77
F G K+ +W+++ + E ++ + +LL F L +V + D
Sbjct: 18 FLAHGEKKFRATQVWEWLYTKRVASFSEMSNISKSLMTLLEENF-SLNPLKQVIVQEAQD 76
Query: 78 VTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATG 137
T K L +L + +E V+MR + L ++C+++QVGC +GC FCA+G
Sbjct: 77 GTVKYLFELPDKNMIETVLMRQEYGL--------------SVCVTTQVGCNIGCTFCASG 122
Query: 138 TMGFKSNLSSGEIVEQLVHASRLSNIR-------NVVFMGMGEPLNNYAALVEAVRIMT- 189
+ + +L++GEIV Q++ + R +VV MG+GEP +NYA ++ +R +
Sbjct: 123 LLKKQRDLTAGEIVAQIMWVQHYFDERGLDERVSHVVVMGIGEPFDNYANVMNFLRTIND 182
Query: 190 --GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPL 247
GL + + ITVST G+V I +F +NLA+SLHAP +VR IM R+FP+
Sbjct: 183 DKGLA--IGARHITVSTSGLVPKIREFADSGLQVNLAISLHAPNNEVRTSIMRINRSFPI 240
Query: 248 EKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVV--VNLIPFNPIG 305
EKLM A+ EY + + +++ EYIML VND +HA QL LL + + VNLIP+NP+
Sbjct: 241 EKLMVAIDEYIEKNNRRVTFEYIMLSQVNDRPEHAQQLADLLRNKKKLSYVNLIPYNPVS 300
Query: 306 SVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 350
Q+ SS + V F +L+ + I +RK+ G DI ACGQL
Sbjct: 301 EHDQYSRSSKEAVLKFYDVLKKN-GINCVIRKEHGTDIDAACGQL 344
>gi|408681027|ref|YP_006880854.1| Ribosomal RNA large subunit methyltransferase N [Streptomyces
venezuelae ATCC 10712]
gi|328885356|emb|CCA58595.1| Ribosomal RNA large subunit methyltransferase N [Streptomyces
venezuelae ATCC 10712]
Length = 368
Score = 203 bits (517), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 120/323 (37%), Positives = 175/323 (54%), Gaps = 33/323 (10%)
Query: 45 EFPSLPSAAYSLLRSKFKPLTSTLHSVVDSSDDVTTKLLVKLQNGGFVEAVIMRYDSSLG 104
E+ +P+A+ L + P ++ + DD T K L +L +G VE+V+MRY
Sbjct: 61 EWTDIPAASREKLAGELLPDLMSVVRHISCDDDTTRKTLWRLHDGTLVESVLMRYPD--- 117
Query: 105 KYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRL---- 160
R T+CISSQ GC M C FCATG G NLS+ EIV Q+V R
Sbjct: 118 -----------RVTMCISSQAGCGMNCPFCATGQAGLDRNLSTAEIVHQIVDGMRALRDG 166
Query: 161 ------SNIRNVVFMGMGEPLNNYAALVEAVRIMT-----GLPFQVSPKRITVSTVGIVH 209
+ + N+VFMGMGEPL NY +V A+R +T GL +S + ITVSTVG+V
Sbjct: 167 EVPGGPARLSNIVFMGMGEPLANYKRVVGAIRRLTDPEPDGL--GLSQRGITVSTVGLVP 224
Query: 210 AINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEY 269
A+ +F + LAVSLHAP ++R ++P + + ++++A EY + S ++I IEY
Sbjct: 225 AMLRFADEGFKCRLAVSLHAPDDELRDTLVPVNTRWKVREVLDAAWEYAEKSGRRISIEY 284
Query: 270 IMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSY 329
++ +ND+ LG+LL+ +V VNLIP NP + +D+ + + I R +
Sbjct: 285 ALIRDINDQAWRGDLLGRLLKGRRVHVNLIPLNPTPGSKWTASRPEDEKAFVEAIAR--H 342
Query: 330 NIRTTVRKQMGQDISGACGQLVV 352
+ TVR GQ+I GACGQL
Sbjct: 343 GVPVTVRDTRGQEIDGACGQLAA 365
>gi|239826567|ref|YP_002949191.1| ribosomal RNA large subunit methyltransferase N [Geobacillus sp.
WCH70]
gi|239806860|gb|ACS23925.1| radical SAM enzyme, Cfr family [Geobacillus sp. WCH70]
Length = 364
Score = 203 bits (517), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 109/327 (33%), Positives = 190/327 (58%), Gaps = 25/327 (7%)
Query: 31 IWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHSVV-DSSDDVTTKLLVKLQNG 89
I++++ + ++ E +LP L F +TL ++V +S D T K L +L +G
Sbjct: 46 IYEWLYQKRATDFSEMTNLPKTLREKLSEHFD--ITTLKTLVKQTSKDGTIKFLFELHDG 103
Query: 90 GFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGE 149
+E V+MR++ +++C+++QVGC++GC FCA+ G K +L +GE
Sbjct: 104 YSIETVLMRHNYG--------------NSICVTTQVGCRIGCTFCASTLGGLKRHLEAGE 149
Query: 150 IVEQLVHASRL-----SNIRNVVFMGMGEPLNNYAALVEAVRIMT-GLPFQVSPKRITVS 203
IV Q+V + + ++V MG+GEP +NY L++ ++I+ + + ITVS
Sbjct: 150 IVAQVVKVQKALDEQGERVSSIVVMGIGEPFDNYDELIKFLKIVNHSKGLNIGARHITVS 209
Query: 204 TVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQ 263
T GI+ I +F + +N A+SLHAP ++R ++MP +A+PL KLM+A++ Y + + +
Sbjct: 210 TSGIIPKIYQFADEGMQVNFAISLHAPTTELRTKLMPINKAYPLPKLMDAVRYYIEKTGR 269
Query: 264 KIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQK 323
++ EY + GVND+ +HA QL +L++ + VNLIP N + + RT D++ +F++
Sbjct: 270 RVTFEYGLFGGVNDQIEHAEQLAELIKGLKCHVNLIPVNYVPERNYVRTPR-DQIFAFER 328
Query: 324 ILRGSYNIRTTVRKQMGQDISGACGQL 350
L+ + I T+R++ G DI ACGQL
Sbjct: 329 ALK-KHGINVTIRREHGHDIDAACGQL 354
>gi|297564808|ref|YP_003683780.1| radical SAM enzyme, Cfr family [Meiothermus silvanus DSM 9946]
gi|296849257|gb|ADH62272.1| radical SAM enzyme, Cfr family [Meiothermus silvanus DSM 9946]
Length = 344
Score = 203 bits (517), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 120/322 (37%), Positives = 169/322 (52%), Gaps = 27/322 (8%)
Query: 42 EWDEFPSLPSAAYSLLRSKFKPLTSTLHSVVDSSDDVTTKLLVKLQNGGFVEAVIMRYDS 101
EW E LP L K++ ++ H S D K L L +G EAV M Y
Sbjct: 41 EWSEMTDLPKGLRQELAEKYR-VSEFAHVAPFVSQDGAVKYLYTLWDGQKTEAVYMPYAG 99
Query: 102 SLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLS 161
R T+CISS VGC GC FCATG MGF NL++ EI++Q++ A+
Sbjct: 100 --------------RKTICISSMVGCPAGCTFCATGKMGFGRNLTAAEILDQILFAAHHQ 145
Query: 162 N-----IRNVVFMGMGEPLNNYAALVEAVRIM---TGLPFQVSPKRITVSTVGIVHAINK 213
IRNVV MGMGEPL N ++EA+R M GL +SP+RIT+STVGI I +
Sbjct: 146 GHSPREIRNVVLMGMGEPLLNLNHVLEAIRRMLDPQGL--AMSPRRITLSTVGIPRGIYR 203
Query: 214 FHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLD 273
+ G+ LA+SLHAP R +I+P A + + ++M A++ Y +++++ +EY +L
Sbjct: 204 LAQEDLGVRLALSLHAPDDQTRQKIIPTAHRYSIAEIMEAVRHYYAQTKRRVTLEYTLLK 263
Query: 274 GVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRT 333
G+ND A L LL VNLIP+NP + + +K+ +F L I
Sbjct: 264 GLNDHPWQARALAGLLAGLSAHVNLIPWNPWEGAPH-QGTGKEKILAFAAALE-RMGIPV 321
Query: 334 TVRKQMGQDISGACGQLVVNLP 355
+VR G+D+ ACGQL + P
Sbjct: 322 SVRWSRGRDVGAACGQLALQQP 343
>gi|354581801|ref|ZP_09000704.1| radical SAM enzyme, Cfr family [Paenibacillus lactis 154]
gi|353200418|gb|EHB65878.1| radical SAM enzyme, Cfr family [Paenibacillus lactis 154]
Length = 353
Score = 203 bits (517), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 113/339 (33%), Positives = 190/339 (56%), Gaps = 26/339 (7%)
Query: 22 GIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHSVVDSSDDVTTK 81
G K+ +W+++ + + E + + LL F +T H+ +S D T K
Sbjct: 22 GHKKSRATRVWEWLYRSRVTAFSEMTDVHPSCLELLEEHFAIVTLEEHTKQESMDG-TVK 80
Query: 82 LLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGF 141
L +L +G +E V+MR+ L ++C+++QVGC +GC+FCA+G +
Sbjct: 81 FLFRLADGNLIETVLMRHKFGL--------------SVCVTTQVGCNIGCSFCASGLLKK 126
Query: 142 KSNLSSGEIVEQL----VHASRL---SNIRNVVFMGMGEPLNNYAALVEAVRIMTGLP-F 193
+L++ EIVEQ+ +H R + ++V MG+GEP +NY + +R++
Sbjct: 127 SRDLTAAEIVEQVMQVQLHLDRRGQDERVSHLVVMGIGEPFDNYDNMANFIRVIKDHKGL 186
Query: 194 QVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNA 253
+ P+ ITVST G+ + I +F NLA+SLHAP ++R +IM +A P+EKLM A
Sbjct: 187 AIGPRHITVSTSGLANKIIEFADSDLNTNLAISLHAPNNELRTRIMKINKAIPIEKLMEA 246
Query: 254 LKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVV--VNLIPFNPIGSVSQFR 311
+ Y + ++++I +EYI+L VND+ +HA +L +L+ + + VNLIP+NP+ SQ++
Sbjct: 247 IDYYLEKTKRRITLEYILLKDVNDQREHALELAELVGDRRSLANVNLIPYNPVDEHSQYQ 306
Query: 312 TSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 350
SS + +++F L+ I +VR + G DI ACGQL
Sbjct: 307 RSSKETITAFYDTLKKQ-GISVSVRLEHGTDIDAACGQL 344
>gi|345303784|ref|YP_004825686.1| ribosomal RNA large subunit methyltransferase N [Rhodothermus
marinus SG0.5JP17-172]
gi|345113017|gb|AEN73849.1| Ribosomal RNA large subunit methyltransferase N [Rhodothermus
marinus SG0.5JP17-172]
Length = 362
Score = 203 bits (517), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 117/292 (40%), Positives = 173/292 (59%), Gaps = 24/292 (8%)
Query: 74 SSDDVTTKLLVKLQNGGFVEAVIM-RYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCN 132
++ D T K+L +L +G +E+V++ +D + R T+C+SSQVGC MGC
Sbjct: 74 TAGDQTVKVLFRLPSGRHIESVLIPDFDEETVRVR--------RLTVCVSSQVGCAMGCA 125
Query: 133 FCATGTMGFKSNLSSGEIVEQLVHASRLS------NIRNVVFMGMGEPLNNYAALVEAVR 186
FCATG MGF+ NL++GEI +Q+ +RL+ I NVV+MGMGEPL NY A++ +V
Sbjct: 126 FCATGLMGFQQNLTAGEIYDQVWQLNRLAEERFGRRITNVVYMGMGEPLLNYDAVIRSVA 185
Query: 187 IMTGLP-FQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAAR-- 243
++T +SP+RITVSTVG+ I + D LAVSLHAP R IMP R
Sbjct: 186 LLTDRDGLGLSPRRITVSTVGLARRIRQLADDGVRFRLAVSLHAPTNAQRSAIMPVNRNE 245
Query: 244 AFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNP 303
L+ L++A++ ++ + Q I EY + +G ND + AH+L + E VNLI +NP
Sbjct: 246 QTDLDDLIDAIRYFEARTGQTITYEYCLFEGFNDRPEDAHRLADITEQAPGKVNLILYNP 305
Query: 304 IGSVSQFRTSSDDKVSSFQKIL--RGSYNIRTTVRKQMGQDISGACGQLVVN 353
+ + F S++++ +F ++L RG + TVR+ GQDI+ ACGQL V
Sbjct: 306 VEGLP-FHRPSEERLQAFIRVLVDRG---VTVTVRRSRGQDINAACGQLAVR 353
>gi|410637360|ref|ZP_11347940.1| 23S rRNA (adenine2503-C2)-methyltransferase [Glaciecola lipolytica
E3]
gi|410142983|dbj|GAC15145.1| 23S rRNA (adenine2503-C2)-methyltransferase [Glaciecola lipolytica
E3]
Length = 378
Score = 203 bits (517), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 125/363 (34%), Positives = 198/363 (54%), Gaps = 40/363 (11%)
Query: 17 EFEKAGIKQHFIPL---------IWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTST 67
+F + G+++ F + + K++ + ++++ +L + + L + + + +
Sbjct: 14 DFNRQGLREFFASIGEKPFRADQLMKWIYQQGETDFEKMTNLNKSLRAKLVERCE-IKAP 72
Query: 68 LHSVVDSSDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGC 127
+ ++ D T K +KL+ G VE V + P R+TLC+SSQVGC
Sbjct: 73 EIAYQQNATDGTIKFALKLEGGQEVETVWI--------------PEADRATLCVSSQVGC 118
Query: 128 KMGCNFCATGTMGFKSNLSSGEIVEQLVHASR---LSN------IRNVVFMGMGEPLNNY 178
+ C FC+T GF NL+ EI+ Q+ + LS I NVV MGMGEPL N
Sbjct: 119 ALECTFCSTAQQGFNRNLTVSEIIGQVWRVATTIGLSKDTAKRPITNVVMMGMGEPLLNL 178
Query: 179 AALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQ 237
+V A+ IM L F +S +R+T+ST G+V A++K D+ + LA+SLHAP D+R +
Sbjct: 179 KHVVPAMDIMLDDLGFGLSKRRVTLSTSGVVPALDKL-GDMIDVALAISLHAPTNDLRDE 237
Query: 238 IMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQV 294
I+P + +P+E+ + ++ Y S Q K+ +EY+ML+G+ND AHQL K+L+
Sbjct: 238 IVPVNKKYPIEEFLAGVRRYLAKSNANQGKVTVEYVMLNGINDSTDQAHQLAKVLKETPC 297
Query: 295 VVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNL 354
+NLIPFNP S + SS+ ++ F K+L Y I VRK G DI ACGQLV ++
Sbjct: 298 KINLIPFNPYPG-SPYTCSSNSRIDRFSKVLM-EYGITVVVRKTRGDDIDAACGQLVGDV 355
Query: 355 PDK 357
D+
Sbjct: 356 VDR 358
>gi|430835133|ref|ZP_19453129.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E0679]
gi|430836828|ref|ZP_19454805.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E0680]
gi|430839860|ref|ZP_19457797.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E0688]
gi|430859356|ref|ZP_19476968.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E1552]
gi|430484562|gb|ELA61536.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E0679]
gi|430488151|gb|ELA64844.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E0680]
gi|430490309|gb|ELA66841.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E0688]
gi|430543717|gb|ELA83772.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E1552]
Length = 355
Score = 203 bits (517), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 119/345 (34%), Positives = 184/345 (53%), Gaps = 30/345 (8%)
Query: 18 FEKAGIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKF--KPLTSTLHSVVDSS 75
F + G K+ +W+++ + + E +L L F PL VV +
Sbjct: 18 FIENGEKKFRAAQVWEWLYQKRVSNFTEMTNLSKQLIEKLSEHFIINPLKQM---VVQEA 74
Query: 76 DDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCA 135
D T K L +L + +E V+MR + L ++C+++QVGC +GC FCA
Sbjct: 75 SDGTVKYLFELPDKNMIETVLMRQEYGL--------------SVCVTTQVGCNIGCTFCA 120
Query: 136 TGTMGFKSNLSSGEIVEQLVHASRLSNIRN-------VVFMGMGEPLNNYAALVEAVRIM 188
+G + +L++GEIV Q++ + RN VV MG+GEP +NY +++ + I+
Sbjct: 121 SGLLKKNRDLTAGEIVAQIMMVQHYFDERNLGERVSHVVVMGIGEPFDNYDNVMDFLHII 180
Query: 189 TGLP-FQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPL 247
+ + ITVST G+ H I +F ++ +NLA+SLHAP +VR IM R+FP+
Sbjct: 181 NDAKGLAIGARHITVSTSGLAHKIKEFANNGLQVNLAISLHAPNNEVRTSIMRINRSFPI 240
Query: 248 EKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQ--VVVNLIPFNPIG 305
EKLM A+ EY + + ++I EYIML+ VND +HA QL LL+ + VNLIP+NP+
Sbjct: 241 EKLMEAVDEYLEKTNRRITFEYIMLNQVNDRPEHAQQLADLLKDKKKLAYVNLIPYNPVS 300
Query: 306 SVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 350
Q+ S V F +L+ + + +RK+ G DI ACGQL
Sbjct: 301 EHDQYSRSPKADVLRFYDVLKKN-GVNCVIRKEHGTDIDAACGQL 344
>gi|329926694|ref|ZP_08281104.1| 23S rRNA m2A2503 methyltransferase [Paenibacillus sp. HGF5]
gi|328939034|gb|EGG35400.1| 23S rRNA m2A2503 methyltransferase [Paenibacillus sp. HGF5]
Length = 353
Score = 203 bits (516), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 114/339 (33%), Positives = 190/339 (56%), Gaps = 26/339 (7%)
Query: 22 GIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHSVVDSSDDVTTK 81
G K+ +W+++ + + + LL + LT H+ +S D T K
Sbjct: 22 GHKKFRATQVWEWLYRKRVTSFSDMTDVHPECLQLLEEHYTILTLEEHTKQESLDG-TVK 80
Query: 82 LLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGF 141
L KL +G +E V+MR+ L ++C+++QVGC +GC+FCA+G +
Sbjct: 81 FLFKLVDGNLIETVLMRHKFGL--------------SVCVTTQVGCNIGCSFCASGLLKK 126
Query: 142 KSNLSSGEIVEQL----VHASRLSN---IRNVVFMGMGEPLNNYAALVEAVRIMTGLP-F 193
+LS+ EIVEQ+ +H R + + ++V MG+GEP +NY + + +R++
Sbjct: 127 SRDLSAAEIVEQVMQVQLHLDRRGSSERVSHLVVMGIGEPFDNYENMSDFIRVIKDHKGL 186
Query: 194 QVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNA 253
+ P+ ITVST G+ + I +F G+NLA+SLHAP ++R +IM +A P+EKLM A
Sbjct: 187 AIGPRHITVSTSGLANKIVEFADSDLGVNLAISLHAPNDEIRTRIMKINKAIPIEKLMAA 246
Query: 254 LKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVV--VNLIPFNPIGSVSQFR 311
+ Y + + ++I +EYI+L VND+ +HA +L +L+ + + VNLIP+NP+ SQ++
Sbjct: 247 IDYYLEKTNRRITLEYILLKDVNDQREHALELAELVGERRNLANVNLIPYNPVDEHSQYQ 306
Query: 312 TSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 350
S+ + ++ F L+ I +VR + G DI ACGQL
Sbjct: 307 RSTKESITGFYDTLKKQ-GISCSVRLEHGTDIDAACGQL 344
>gi|148359081|ref|YP_001250288.1| Cfr family transporter radical SAM protein [Legionella pneumophila
str. Corby]
gi|296107129|ref|YP_003618829.1| radical SAM protein [Legionella pneumophila 2300/99 Alcoy]
gi|205829782|sp|A5IC42.1|RLMN_LEGPC RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|148280854|gb|ABQ54942.1| radical SAM enzyme, Cfr family [Legionella pneumophila str. Corby]
gi|295649030|gb|ADG24877.1| radical SAM enzyme, Cfr family [Legionella pneumophila 2300/99
Alcoy]
Length = 382
Score = 203 bits (516), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 120/297 (40%), Positives = 177/297 (59%), Gaps = 30/297 (10%)
Query: 75 SDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFC 134
S D T K L+KL+ G +E V + P R TLC+SSQVGC + C+FC
Sbjct: 76 SADGTHKWLLKLECGNCIETVFI--------------PEANRGTLCVSSQVGCALNCSFC 121
Query: 135 ATGTMGFKSNLSSGEIVEQLVHASR-LSN--------IRNVVFMGMGEPLNNYAALVEAV 185
+T GF NLS+ EI+ Q+ A+R LS+ I NVV MGMGEPL N+ +V A+
Sbjct: 122 STAKQGFNRNLSTAEIIGQVWLAARELSDNNGAHDKKITNVVMMGMGEPLLNFDNVVSAM 181
Query: 186 RIMT-GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARA 244
IM L + +S +R+T+ST G++ + + P + LAVSLHAP ++R +++P +
Sbjct: 182 SIMMDDLAYGLSKRRVTLSTSGVLPEMERLREVSP-VALAVSLHAPTDELRNELVPINKK 240
Query: 245 FPLEKLMNALKEYQKNS-QQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNP 303
+PL +L++ K Y K+ ++K+ EY+ML GVND+ +HA QL KLL VNLIPFNP
Sbjct: 241 YPLSQLISLCKRYFKDEPRRKVTFEYVMLKGVNDQPEHASQLIKLLHNVPAKVNLIPFNP 300
Query: 304 IGSVSQFRTSSDDKVSSFQ-KILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDKIS 359
++Q++ SS + + +F+ K+++ + I T RK G DI ACGQL + DK +
Sbjct: 301 F-PLTQYQRSSRETIDAFRDKLIK--HGINTITRKTRGDDIDAACGQLAGEVKDKTT 354
>gi|453052411|gb|EME99893.1| ribosomal RNA large subunit methyltransferase N [Streptomyces
mobaraensis NBRC 13819 = DSM 40847]
Length = 370
Score = 203 bits (516), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 120/324 (37%), Positives = 177/324 (54%), Gaps = 33/324 (10%)
Query: 45 EFPSLPSAAYSLLRSKFKPLTSTLHSVVDSSDDVTTKLLVKLQNGGFVEAVIMRYDSSLG 104
++ +P+AA L + P ++ + DD T K L +L +G VE+V+MRY
Sbjct: 63 QWTDIPAAAREKLAGELLPELMSVVRHISCDDDTTRKTLWRLHDGKLVESVLMRYPD--- 119
Query: 105 KYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRL---- 160
R T+CISSQ GC M C FCATG G NLS+ EIV Q+V R
Sbjct: 120 -----------RVTMCISSQAGCGMNCPFCATGQAGLDRNLSTAEIVHQIVDGMRALRDG 168
Query: 161 ------SNIRNVVFMGMGEPLNNYAALVEAVRIMT-----GLPFQVSPKRITVSTVGIVH 209
+ + N+VFMGMGEPL NY +V A+R +T GL +S + ITVSTVG+V
Sbjct: 169 EVPGGPARLSNIVFMGMGEPLANYKRVVGAIRRLTDPEPDGL--GLSQRGITVSTVGLVP 226
Query: 210 AINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEY 269
A+++F + LAVSLHAP ++R ++P + + ++++A EY + S ++I IEY
Sbjct: 227 AMHRFADEGFKCRLAVSLHAPDDELRDTLVPVNTRWKVREVLDAAWEYAEKSGRRISIEY 286
Query: 270 IMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSY 329
++ +ND+ LG+LL+ +V VNLIP NP S++ S + +F + ++
Sbjct: 287 ALIRDINDQAWRGDLLGRLLKGKRVHVNLIPLNPTPG-SKWTASRPEDERAFVAAI-AAH 344
Query: 330 NIRTTVRKQMGQDISGACGQLVVN 353
+ TVR GQ+I GACGQL
Sbjct: 345 GVPVTVRDTRGQEIDGACGQLAAT 368
>gi|222110300|ref|YP_002552564.1| radical sam enzyme, cfr family [Acidovorax ebreus TPSY]
gi|221729744|gb|ACM32564.1| radical SAM enzyme, Cfr family [Acidovorax ebreus TPSY]
Length = 383
Score = 203 bits (516), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 136/369 (36%), Positives = 196/369 (53%), Gaps = 41/369 (11%)
Query: 9 FDGGIIRAEFEKAGIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLT--S 66
FD + A E+ G K+ +++++ + ++D+ L + LR K + +
Sbjct: 17 FDLDGLAAFCERLGEKRFRATQLFRWIHQRGASDFDQMSDLAKS----LREKLRGCAHVA 72
Query: 67 TLHSVVDS-SDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQV 125
L ++ + S D T K L + +G VE V + P R TLCISSQ
Sbjct: 73 GLQAISEHVSADGTVKWLFDVGDGNAVETVFI--------------PEDDRGTLCISSQA 118
Query: 126 GCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN---------IRNVVFMGMGEPLN 176
GC +GC FC+TG GF NL++GEI+ QL +A I NVV MGMGEPL
Sbjct: 119 GCAVGCRFCSTGHQGFSRNLTTGEILAQLWYAEHALRQRRGDGERVISNVVMMGMGEPLQ 178
Query: 177 NYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVR 235
NYAALV A+R+M + +S +R+TVST G+V +++ D P + LAVSLHAP +R
Sbjct: 179 NYAALVPALRVMLDDHGYGLSRRRVTVSTSGVVPMMDRLAQDCP-VALAVSLHAPNDVLR 237
Query: 236 CQIMPAARAFPLEKLMNALKEYQKNSQQK-IFIEYIMLDGVNDEEQHAHQLGKLLET--- 291
++P R +PL +L+ A + Y ++ + I EY ML+GVND+ +HA QL L+
Sbjct: 238 DNLVPLNRKYPLHELLAACRRYLDHAPRDFITFEYCMLEGVNDQPEHARQLIDLVGRKAA 297
Query: 292 ---FQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACG 348
NLIPFNP S R S V++F ++L + I TTVRK G DI ACG
Sbjct: 298 DGGVSCKFNLIPFNPF-PASGLRRSPPAAVTAFAQLLSDA-GIVTTVRKTRGDDIDAACG 355
Query: 349 QLVVNLPDK 357
QL ++ D+
Sbjct: 356 QLAGDVKDR 364
>gi|421145204|ref|ZP_15605094.1| florfenicol resistance protein [Fusobacterium nucleatum subsp.
fusiforme ATCC 51190]
gi|395488403|gb|EJG09268.1| florfenicol resistance protein [Fusobacterium nucleatum subsp.
fusiforme ATCC 51190]
Length = 358
Score = 203 bits (516), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 121/336 (36%), Positives = 185/336 (55%), Gaps = 17/336 (5%)
Query: 22 GIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSK-FKPLTSTLHSVVDSSDDVTT 80
G+K+ + ++ ++ + +DE +L +L K + P + L V S D T
Sbjct: 24 GLKKFYGKEVFIWLHKKITRSFDEMTNLSLKDREILTEKTYIPFFNLLKHQV-SKIDKTE 82
Query: 81 KLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMG 140
K L +L++ G +E V++R+ S K R R+TLC+SSQVGC + C+FCATG G
Sbjct: 83 KFLFELEDKGTIETVLLRHKDS------KNRE--IRNTLCVSSQVGCPVKCSFCATGQSG 134
Query: 141 FKSNLSSGEIVEQLVHASRL-----SNIRNVVFMGMGEPLNNYAALVEAVRIMTGLP-FQ 194
+ NLS EI+ Q+ R + N+VFMGMGEPL N L +++ I++
Sbjct: 135 YMRNLSVSEILNQIYTVERRLRKKGETLNNLVFMGMGEPLLNIDNLAKSLSIISNENGVN 194
Query: 195 VSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNAL 254
+S ++IT+ST G+V I K D + LA+SLH+ + + R +I+P + FPLE L L
Sbjct: 195 ISKRKITISTSGVVSGIEKILLDKIPIELAISLHSAINEKRDKIIPLNKNFPLEDLSAVL 254
Query: 255 KEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSS 314
EYQK ++++I EYI++D N E A+ L + F V+NLIP+N + V R S
Sbjct: 255 VEYQKQTKRRITFEYILIDNFNISETDANALADFIHQFDHVINLIPYNEVEGVEHTRPSV 314
Query: 315 DDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 350
K+ F L+ + T+R++ G DI GACGQL
Sbjct: 315 -KKIDKFYNYLKNVRKVNVTLRQEKGSDIDGACGQL 349
>gi|288904758|ref|YP_003429979.1| hypothetical protein GALLO_0545 [Streptococcus gallolyticus UCN34]
gi|306830757|ref|ZP_07463921.1| cfr family radical SAM enzyme [Streptococcus gallolyticus subsp.
gallolyticus TX20005]
gi|325977679|ref|YP_004287395.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
gallolyticus subsp. gallolyticus ATCC BAA-2069]
gi|386337194|ref|YP_006033363.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
gallolyticus subsp. gallolyticus ATCC 43143]
gi|288731483|emb|CBI13037.1| conserved hypothetical protein [Streptococcus gallolyticus UCN34]
gi|304427104|gb|EFM30212.1| cfr family radical SAM enzyme [Streptococcus gallolyticus subsp.
gallolyticus TX20005]
gi|325177607|emb|CBZ47651.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
gallolyticus subsp. gallolyticus ATCC BAA-2069]
gi|334279830|dbj|BAK27404.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
gallolyticus subsp. gallolyticus ATCC 43143]
Length = 368
Score = 203 bits (516), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 121/361 (33%), Positives = 195/361 (54%), Gaps = 34/361 (9%)
Query: 22 GIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKF--KPLTSTLHSVVDSSDDVT 79
G K+ IW ++ ++E ++ ++L F PL VV + D T
Sbjct: 28 GEKKFRATQIWDWLYRKRVQSFEEMTNISKDFIAVLNENFCVNPLK---QRVVQEASDGT 84
Query: 80 TKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTM 139
K L +L +G +E V+MR L ++C++SQVGC MGC+FCA+G +
Sbjct: 85 VKYLFELPDGMLIETVLMRQHYGL--------------SVCVTSQVGCNMGCSFCASGLI 130
Query: 140 GFKSNLSSGEIVEQLVHASRLSNIR-------NVVFMGMGEPLNNYAALVEAVRIMT--- 189
+ +L+SGEI Q++ + + R +VV MG+GEP +NY ++ +R +
Sbjct: 131 KKQRDLTSGEITSQIMMVQKYFDERGQDERVSHVVVMGIGEPFDNYNNVLRFLRTINDDN 190
Query: 190 GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEK 249
GL + + ITVST G+ H I F + +NLAVSLHAP ++R QIM R+FPLEK
Sbjct: 191 GLA--IGARHITVSTSGLAHKIRDFAHESLQVNLAVSLHAPNNELRSQIMRVNRSFPLEK 248
Query: 250 LMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVV--VNLIPFNPIGSV 307
L A++ Y + + +++ EYIML+ VND ++A +L L + + + +NLIP+NP+
Sbjct: 249 LFAAIEYYVETTNRRVTFEYIMLNEVNDFPENAQELADLTKKIRKLSYINLIPYNPVSEH 308
Query: 308 SQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDKISAKSTPPVT 367
Q+ SS ++V++F +L+ + + VR++ G DI ACGQL N + K+ T
Sbjct: 309 DQYSRSSKERVAAFYDVLKKN-GVNCVVRQEHGTDIDAACGQLRSNTMKRDRQKAVAEKT 367
Query: 368 D 368
+
Sbjct: 368 N 368
>gi|440694325|ref|ZP_20876953.1| 23S rRNA m2A2503 methyltransferase [Streptomyces turgidiscabies
Car8]
gi|440283689|gb|ELP70915.1| 23S rRNA m2A2503 methyltransferase [Streptomyces turgidiscabies
Car8]
Length = 370
Score = 203 bits (516), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 117/322 (36%), Positives = 172/322 (53%), Gaps = 29/322 (9%)
Query: 45 EFPSLPSAAYSLLRSKFKPLTSTLHSVVDSSDDVTTKLLVKLQNGGFVEAVIMRYDSSLG 104
E+ +P+A+ L+ P T+ + + D T K L ++ +G VE+V+MRY
Sbjct: 63 EWTDIPAASRGKLQEALLPELMTVVRHLSTDQDTTRKTLWRMFDGTLVESVLMRYPD--- 119
Query: 105 KYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRL---- 160
R T+CISSQ GC M C FCATG G NLS+ EIV Q+V R
Sbjct: 120 -----------RVTMCISSQAGCGMNCPFCATGQAGLDRNLSTAEIVHQIVDGMRALRDG 168
Query: 161 ------SNIRNVVFMGMGEPLNNYAALVEAVRIMTGLP---FQVSPKRITVSTVGIVHAI 211
+ + N+VFMGMGEPL NY +V A+R +T +S + ITVSTVG+V AI
Sbjct: 169 EIPGGPARLSNIVFMGMGEPLANYKRVVGAIRALTDPAPDGMGLSQRGITVSTVGLVPAI 228
Query: 212 NKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIM 271
N+F + LA+SLHAP ++R ++P + + ++++A EY S +++ IEY M
Sbjct: 229 NRFSDEGFKCRLAISLHAPDDELRDTLVPVNTRWKVREVLDAGWEYAAKSGRRLSIEYAM 288
Query: 272 LDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNI 331
+ +ND+ +LG+LL V VNLIP NP + +D+ + + I ++ +
Sbjct: 289 IRDINDQAWRGDRLGRLLRGKPVHVNLIPLNPTPGSKWTASRPEDEKAFVEAI--AAHGV 346
Query: 332 RTTVRKQMGQDISGACGQLVVN 353
TVR GQ+I GACGQL
Sbjct: 347 PVTVRDTRGQEIDGACGQLAAT 368
>gi|319794361|ref|YP_004156001.1| radical SAM protein [Variovorax paradoxus EPS]
gi|315596824|gb|ADU37890.1| radical SAM enzyme, Cfr family [Variovorax paradoxus EPS]
Length = 384
Score = 203 bits (516), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 125/299 (41%), Positives = 166/299 (55%), Gaps = 30/299 (10%)
Query: 75 SDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFC 134
S D T K L + +G VEAV + P R TLC+SSQ GC +GC FC
Sbjct: 74 SKDGTIKWLFDVGDGNAVEAVFI--------------PEDDRGTLCVSSQAGCAVGCRFC 119
Query: 135 ATGTMGFKSNLSSGEIVEQLVHASRLSN---------IRNVVFMGMGEPLNNYAALVEAV 185
+TG GF NLS+GEIV QL A I NVV MGMGEPL NY ALV A+
Sbjct: 120 STGHQGFSRNLSTGEIVAQLWFAEHFLRKHLKRDERVISNVVMMGMGEPLQNYTALVPAL 179
Query: 186 RIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARA 244
R M + +S +R+TVST G+V I++ +D + +AVSLHAP +R ++P R
Sbjct: 180 RTMLDDNAYGLSRRRVTVSTSGVVPMIDRLGTDC-AVAMAVSLHAPNDALRDDLVPLNRK 238
Query: 245 FPLEKLMNALKEYQKNSQQK-IFIEYIMLDGVNDEEQHAHQLGKLLETFQVVV--NLIPF 301
+P+ +L+ A K Y +++ + I EY MLDGVND+ +HA QL +L+ V NLIPF
Sbjct: 239 YPIAELLEACKRYLEHAPRDFITFEYCMLDGVNDQPEHARQLVELVRKHDVSCKFNLIPF 298
Query: 302 NPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDKISA 360
NP + R S +V +F + L + TTVRK G DI ACGQL ++ D+ A
Sbjct: 299 NPFPASGLLR-SPQPRVLAFARTL-SEAGLVTTVRKTRGDDIDAACGQLAGDVKDRTRA 355
>gi|331269682|ref|YP_004396174.1| radical SAM family protein [Clostridium botulinum BKT015925]
gi|329126232|gb|AEB76177.1| radical SAM enzyme, Cfr family [Clostridium botulinum BKT015925]
Length = 343
Score = 203 bits (516), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 110/326 (33%), Positives = 184/326 (56%), Gaps = 19/326 (5%)
Query: 31 IWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHSVVDSSDDVTTKLLVKLQNGG 90
I++++ + +DE ++ A+ L++ F + S+ D T K L + ++G
Sbjct: 29 IFEWIYKKAIFNFDEMTNISKASKEKLKNSFYIEIPNIMEKYKSNIDGTEKFLFEYKDGN 88
Query: 91 FVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEI 150
+E+V+MRY +++C+S+Q+GC+MGC FCA+ G NL+SGEI
Sbjct: 89 IIESVVMRYKHG--------------NSICVSTQIGCRMGCKFCASTVDGVVRNLTSGEI 134
Query: 151 VEQLVHASRL--SNIRNVVFMGMGEPLNNYAALVEAVRIMTG-LPFQVSPKRITVSTVGI 207
Q++ A + I NVV MG GEPL+NY +++ ++++ ++ + IT+ST GI
Sbjct: 135 AAQILKAQQEIGERISNVVLMGSGEPLDNYDNVLKFIKLINDDNALKIGQRHITLSTCGI 194
Query: 208 VHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFI 267
V I + + + LA+SLHAP D+R +MP A + + +L++A K Y K + ++I
Sbjct: 195 VPKIKELADEKLQITLAISLHAPNDDIRKSMMPVANKYNINELLDACKYYSKITNRRITF 254
Query: 268 EYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRG 327
EY +++G+ND ++A +L L+ +NLIP N I R+ + D + F+ IL
Sbjct: 255 EYALVNGINDSAKNAEELFNQLKGILCHINLIPVNEIKENDYKRSGAKD-IEEFKNIL-N 312
Query: 328 SYNIRTTVRKQMGQDISGACGQLVVN 353
Y I TT+R++MG DI+GACGQL N
Sbjct: 313 KYGIETTIRREMGSDINGACGQLRRN 338
>gi|227833380|ref|YP_002835087.1| ribosomal RNA large subunit methyltransferase N [Corynebacterium
aurimucosum ATCC 700975]
gi|262184366|ref|ZP_06043787.1| ribosomal RNA large subunit methyltransferase N [Corynebacterium
aurimucosum ATCC 700975]
gi|227454396|gb|ACP33149.1| hypothetical protein cauri_1556 [Corynebacterium aurimucosum ATCC
700975]
Length = 368
Score = 203 bits (516), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 122/321 (38%), Positives = 177/321 (55%), Gaps = 29/321 (9%)
Query: 45 EFPSLPSAAYSLLRSKFKPLTSTLHSVVDSSDDVTTKLLVKLQNGGFVEAVIMRYDSSLG 104
E +P+AA ++ + P + D TTK L +L +G +E+V+MRY
Sbjct: 60 EMTDIPAAAREAVQERLFPTLMEPIRQTSTDDGETTKSLWRLHDGTLLESVLMRY----- 114
Query: 105 KYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRL---- 160
PG R+TLCISSQ GC M C FCATG G NLS+ EIVEQ HA+RL
Sbjct: 115 -------PG--RATLCISSQAGCGMACPFCATGQGGLDRNLSTAEIVEQFRHAARLMEEE 165
Query: 161 -SNIRNVVFMGMGEPLNNYAALVEAVRIMTG---LPFQVSPKRITVSTVGIVHAINKFHS 216
+ NVVFMGMGEPL NY +V AVR +TG F +S + +TVSTVG+ AI K
Sbjct: 166 GGRLSNVVFMGMGEPLANYKRVVHAVRQITGSELTGFGLSQRNVTVSTVGLAPAIRKLAD 225
Query: 217 DLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVN 276
+ LAVSLH P ++R ++P +P+E++++A K Y S +++ IEY ++ N
Sbjct: 226 EDLSCTLAVSLHTPDDELRDTLVPVNNRWPVEEVLDAAKYYADKSGRRVSIEYALIRDKN 285
Query: 277 DEEQHAHQLGKLLETF---QVVVNLIPFNPIGSVSQFRTSSDDKVSSF-QKILRGSYNIR 332
D++ A LG+ L +V VN+IP NP S++ + + F ++++ + +
Sbjct: 286 DQDFRADMLGRKLHAALGSKVHVNVIPLNPTPG-SEWDAAPKARQDEFVRRVI--AQGVP 342
Query: 333 TTVRKQMGQDISGACGQLVVN 353
TVR G +I+ ACGQL +
Sbjct: 343 CTVRDTKGDEIAAACGQLAAD 363
>gi|346226115|ref|ZP_08847257.1| ribosomal RNA large subunit methyltransferase N [Anaerophaga
thermohalophila DSM 12881]
Length = 345
Score = 203 bits (516), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 122/323 (37%), Positives = 178/323 (55%), Gaps = 23/323 (7%)
Query: 31 IWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHSVVDSSDDVTTKLLVKLQNGG 90
I +++ + + D+ +L + L+ K++ + S V S D T K L G
Sbjct: 29 IAQWLYQKRVTDIDQMTNLSKNGRARLKEKYE-VGRVEPSKVQVSADGTRKYLYPAHKGL 87
Query: 91 FVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEI 150
F+E+ + P R TLC+SSQVGCKMGC FC TG GF+ LS+GEI
Sbjct: 88 FIESAYI--------------PEDDRHTLCVSSQVGCKMGCLFCMTGKQGFQGQLSAGEI 133
Query: 151 VEQLVHASRLSNIRNVVFMGMGEPLNNYAALVEAVRIMT---GLPFQVSPKRITVSTVGI 207
V Q++ + NVV+MGMGEP++N +++++ I T GL + SP+RI VST+GI
Sbjct: 134 VNQVLSLPETELLTNVVYMGMGEPMDNIDNVLKSLEIFTSDWGLAW--SPRRINVSTIGI 191
Query: 208 VHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFI 267
A+ +F + +LA+SLH P + R Q+MP + +P+E ++ L+EY Q++I
Sbjct: 192 EPAMRRFIEESEA-HLAISLHTPFNEERRQLMPVEQVYPIETIIETLREYDFGRQRRISF 250
Query: 268 EYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRG 327
EYIM DGVND H L KLL + +NLI F+PI S R +SD K+ F L
Sbjct: 251 EYIMFDGVNDTPAHIRGLTKLLNGLRCRINLIRFHPIPD-SPLRGASDSKMKWFADQL-N 308
Query: 328 SYNIRTTVRKQMGQDISGACGQL 350
+ TT+R+ G+DI ACG L
Sbjct: 309 KKGLITTIRRSRGEDIFAACGLL 331
>gi|294054447|ref|YP_003548105.1| Cfr family radical SAM protein [Coraliomargarita akajimensis DSM
45221]
gi|293613780|gb|ADE53935.1| radical SAM enzyme, Cfr family [Coraliomargarita akajimensis DSM
45221]
Length = 384
Score = 203 bits (516), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 116/339 (34%), Positives = 180/339 (53%), Gaps = 28/339 (8%)
Query: 43 WDEFPSLPSAAYSLLRSKFKPLTSTLHSVVDSSDDVTTKLLVKLQNGGFVEAVIMRY-DS 101
WD +LP A L + L T + SDDVT K L++L++ +E V++R +
Sbjct: 47 WDAMTNLPKAFRGWLDETY-ILYPTQPLLDKRSDDVTQKFLLELEDKSLIETVLIRAPQT 105
Query: 102 SLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLS 161
+G+ R T+C+S QVGC GC FCA+G GF+ NL E+V QL+H R+
Sbjct: 106 GVGQEKS-------RKTVCVSIQVGCAYGCKFCASGLAGFRRNLGPAEVVSQLMHICRME 158
Query: 162 NIR------------NVVFMGMGEPLNNYAALVEAVRIMT---GLPFQVSPKRITVSTVG 206
+ N+VFMGMGEPL NY LV ++I+ GL F +RITVST G
Sbjct: 159 DAHTERAKDEIASFDNIVFMGMGEPLANYDTLVRTIKILNAEWGLNF--GARRITVSTSG 216
Query: 207 IVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIF 266
+ I + + + LA+SLH +VR +IMP + +PLE+L+ A K +++ + +
Sbjct: 217 VAPKIKQLAEEGVAVRLAISLHGATNEVRNKIMPVNKRYPLEELIPAAKAFKERHGRMLT 276
Query: 267 IEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILR 326
+E+IM++ +ND A +L K+ + VN IP+N + + R S K +F LR
Sbjct: 277 LEFIMIEDINDSIDQARELAKIAKDLHAHVNCIPYNKVEGLEWVRPSV-RKQDAFVDYLR 335
Query: 327 GSYNIRTTVRKQMGQDISGACGQLVVNLPDKISAKSTPP 365
+ + T+R++ G DI+ ACGQL + +++ P
Sbjct: 336 KA-GVSVTIRREKGHDINAACGQLRLKTEKQMAEAEAKP 373
>gi|221632343|ref|YP_002521564.1| radical SAM enzyme, Cfr family [Thermomicrobium roseum DSM 5159]
gi|221156232|gb|ACM05359.1| radical SAM enzyme, Cfr family [Thermomicrobium roseum DSM 5159]
Length = 379
Score = 203 bits (516), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 121/346 (34%), Positives = 193/346 (55%), Gaps = 23/346 (6%)
Query: 12 GIIRAEFEKAGIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHSV 71
G + A E G+ ++ ++ + + E++ LP A S L S+ P++ +
Sbjct: 35 GELEAWVEGRGLPRYRARQLFHWAYQQLVLEYESMSVLPKAVRSEL-SETLPISGLVPVR 93
Query: 72 VDSSDDV-TTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMG 130
SDD T KLL + ++ FVE V+M Y R+T+C+S Q+GC +G
Sbjct: 94 QRVSDDRETIKLLFRTRDDHFVETVVMFYPD--------------RTTVCVSCQIGCAIG 139
Query: 131 CNFCATGTMGFKSNLSSGEIVEQLVHASRLSN-----IRNVVFMGMGEPLNNYAALVEAV 185
C+FCATG G NLS+GE+V Q+VHA+RL+ I N+V MGMGEP +NY A++ V
Sbjct: 140 CSFCATGLSGLIRNLSAGEMVSQVVHAARLARERERRISNIVVMGMGEPFHNYDAVMRFV 199
Query: 186 RIMTGLP-FQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARA 244
I+ + + IT+ST G+V I++ + + LAVSLHAP +R Q++P R
Sbjct: 200 AIVNDRQGLGIGARHITLSTAGVVPFIDRLAEEPYQVKLAVSLHAPNDALRSQLVPINRR 259
Query: 245 FPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPI 304
+P+++L+ A + Y + +++ EY++++ VND+E+ A +L + L VNLIP+NP
Sbjct: 260 WPIDELLAACRRYVARTGRRVTFEYVLIEDVNDDERTAAELARRLRGLLCHVNLIPYNPT 319
Query: 305 GSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 350
+ FR +++ F+ +L Y I TVR G +I+ ACGQL
Sbjct: 320 PAAPLFRRPGPERIERFRAVLE-RYGIPATVRYSRGVEIAAACGQL 364
>gi|118578868|ref|YP_900118.1| ribosomal RNA large subunit methyltransferase N [Pelobacter
propionicus DSM 2379]
gi|205829797|sp|A1AL40.1|RLMN_PELPD RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|118501578|gb|ABK98060.1| 23S rRNA m(2)A-2503 methyltransferase [Pelobacter propionicus DSM
2379]
Length = 347
Score = 203 bits (516), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 117/321 (36%), Positives = 181/321 (56%), Gaps = 18/321 (5%)
Query: 31 IWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHSVVDSSDDVTTKLLVKLQNGG 90
++K++ ++ + E ++ + L +K +++ V+ D T K L L++G
Sbjct: 32 VFKWIYQHDARSFQEMTNISKDLRAELEAK-AYISNLEPEAVEVGGDGTRKYLFGLEDGN 90
Query: 91 FVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEI 150
VE+V++ P R+TLCISSQVGC MGC FC TGT NL++ EI
Sbjct: 91 SVESVLI--------------PDEGRNTLCISSQVGCAMGCAFCLTGTFRLTRNLTTAEI 136
Query: 151 VEQLVHASRLSNIRNVVFMGMGEPLNNYAALVEAVRIMT-GLPFQVSPKRITVSTVGIVH 209
V Q++ R IRN+V MGMGEPL+N ++ A+ IM G Q+S +R+TVST G+
Sbjct: 137 VNQIMAVRRDVEIRNIVMMGMGEPLHNLDNVIPAIHIMIDGNGLQLSNRRVTVSTCGLAP 196
Query: 210 AINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEY 269
+ + +LP +NLAVSL+A ++R +IMP R +PL++L++A +E+ ++K+ EY
Sbjct: 197 EMERLGRELPNVNLAVSLNATTDELRDRIMPINRRYPLKELLSACREFPLPGRRKVTFEY 256
Query: 270 IMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSY 329
+ML G+ND + A +L +L VNLIPFN +FR+ + + +F K L +
Sbjct: 257 VMLGGLNDTLEDAKRLLRLTSDIPNKVNLIPFNEFQGC-EFRSPTRAAIDAFHKYLIDRH 315
Query: 330 NIRTTVRKQMGQDISGACGQL 350
+ R G DIS ACGQL
Sbjct: 316 -VTVITRDSRGSDISAACGQL 335
>gi|121593579|ref|YP_985475.1| radical SAM protein [Acidovorax sp. JS42]
gi|205829704|sp|A1W574.1|RLMN_ACISJ RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|120605659|gb|ABM41399.1| 23S rRNA m(2)A-2503 methyltransferase [Acidovorax sp. JS42]
Length = 374
Score = 203 bits (516), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 136/369 (36%), Positives = 196/369 (53%), Gaps = 41/369 (11%)
Query: 9 FDGGIIRAEFEKAGIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLT--S 66
FD + A E+ G K+ +++++ + ++D+ L + LR K + +
Sbjct: 8 FDLDGLAAFCERLGEKRFRATQLFRWIHQRGASDFDQMSDLAKS----LREKLRGCAHVA 63
Query: 67 TLHSVVDS-SDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQV 125
L ++ + S D T K L + +G VE V + P R TLCISSQ
Sbjct: 64 GLQAISEHVSADGTVKWLFDVGDGNAVETVFI--------------PEDDRGTLCISSQA 109
Query: 126 GCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN---------IRNVVFMGMGEPLN 176
GC +GC FC+TG GF NL++GEI+ QL +A I NVV MGMGEPL
Sbjct: 110 GCAVGCRFCSTGHQGFSRNLTTGEILAQLWYAEHALRQRRGDGERVISNVVMMGMGEPLQ 169
Query: 177 NYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVR 235
NYAALV A+R+M + +S +R+TVST G+V +++ D P + LAVSLHAP +R
Sbjct: 170 NYAALVPALRVMLDDHGYGLSRRRVTVSTSGVVPMMDRLAQDCP-VALAVSLHAPNDVLR 228
Query: 236 CQIMPAARAFPLEKLMNALKEYQKNSQQK-IFIEYIMLDGVNDEEQHAHQLGKLLET--- 291
++P R +PL +L+ A + Y ++ + I EY ML+GVND+ +HA QL L+
Sbjct: 229 DNLVPLNRKYPLHELLAACRRYLDHAPRDFITFEYCMLEGVNDQPEHARQLIDLVGRKAA 288
Query: 292 ---FQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACG 348
NLIPFNP S R S V++F ++L + I TTVRK G DI ACG
Sbjct: 289 DGGVSCKFNLIPFNPF-PASGLRRSPPAAVTAFAQLLSDA-GIVTTVRKTRGDDIDAACG 346
Query: 349 QLVVNLPDK 357
QL ++ D+
Sbjct: 347 QLAGDVKDR 355
>gi|333024150|ref|ZP_08452214.1| putative cfr family radical SAM enzyme [Streptomyces sp. Tu6071]
gi|332744002|gb|EGJ74443.1| putative cfr family radical SAM enzyme [Streptomyces sp. Tu6071]
Length = 369
Score = 203 bits (516), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 125/350 (35%), Positives = 186/350 (53%), Gaps = 41/350 (11%)
Query: 18 FEKAGIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHSVVDSSDD 77
F + QH+ +Y ++P +W + +P+AA L+ P ++ + DD
Sbjct: 43 FRAKQLSQHYFA---RYA-QDP-AQWTD---IPAAARGRLQEALLPELMSVVRHISCDDD 94
Query: 78 VTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATG 137
T K L +L +G VE+V+MRY R T+CISSQ GC M C FCATG
Sbjct: 95 TTRKTLWRLFDGTLVESVLMRYPD--------------RVTMCISSQAGCGMNCPFCATG 140
Query: 138 TMGFKSNLSSGEIVEQLVHASRL----------SNIRNVVFMGMGEPLNNYAALVEAVRI 187
G NLS+ EIV Q+V R + + N+VFMGMGEPL NY +V A+R
Sbjct: 141 QAGLDRNLSAAEIVHQIVEGMRALRDGEIPGGPARLSNIVFMGMGEPLANYNRVVGAIRR 200
Query: 188 MT-----GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAA 242
+T GL +S + ITVSTVG+V AI++F + LAVSLHAP ++R ++P
Sbjct: 201 LTDPEPDGL--GLSQRGITVSTVGLVPAIHRFADEGFKCRLAVSLHAPDDELRDTLVPVN 258
Query: 243 RAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFN 302
+ + ++++A EY + S +++ IEY ++ +ND+ LG+LL+ +V VNLIP N
Sbjct: 259 TRWKVREVLDAAWEYAEKSGRRVSIEYALIRDINDQAWRGDLLGRLLKNKRVHVNLIPLN 318
Query: 303 PIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVV 352
P + +D+ + I ++ + TVR GQ+I GACGQL
Sbjct: 319 PTPGSKWTASRPEDERAFVDAI--AAHGVPVTVRDTRGQEIDGACGQLAA 366
>gi|406943843|gb|EKD75743.1| hypothetical protein ACD_44C00034G0002 [uncultured bacterium]
Length = 349
Score = 203 bits (516), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 119/284 (41%), Positives = 168/284 (59%), Gaps = 24/284 (8%)
Query: 75 SDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFC 134
S D T K L +L G +E V + DS R TLC+SSQVGC + C FC
Sbjct: 74 SHDGTRKWLFRLSEGNCIETVFIPEDS--------------RGTLCVSSQVGCAVNCTFC 119
Query: 135 ATGTMGFKSNLSSGEIVEQLVHASRL-----SNIRNVVFMGMGEPLNNYAALVEAVRI-M 188
+TG GF +L+ EI+ Q++ ASRL I NVV MGMGEPL N+ +V+ + I +
Sbjct: 120 STGKQGFSRDLTVAEIIGQVLLASRLLLPQKKAITNVVMMGMGEPLLNFNNVVQTLDILL 179
Query: 189 TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLE 248
+ +S +R+TVST GI+ + + P + LAVSLHAP ++R ++P R +PL
Sbjct: 180 DDYAYGLSKRRVTVSTSGIIPKMIELKKRSP-VALAVSLHAPNDELRNVLVPVNRKYPLS 238
Query: 249 KLMNALKEYQKNSQQK-IFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSV 307
+LM+ +Y K ++ + +EY+MLD +ND + HA QL +LL+ V VNLIPFNP
Sbjct: 239 ELMSVCSDYFKEEPRRAVMMEYVMLDDINDSDLHAKQLIQLLKNKAVKVNLIPFNPFPKT 298
Query: 308 SQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLV 351
+ + S +K+ FQK L S +I TT+R+ G+DI GACGQLV
Sbjct: 299 T-YHCSPMEKIKKFQKKLMDS-DIMTTIRRTRGEDIEGACGQLV 340
>gi|294101228|ref|YP_003553086.1| radical SAM enzyme, Cfr family [Aminobacterium colombiense DSM
12261]
gi|293616208|gb|ADE56362.1| radical SAM enzyme, Cfr family [Aminobacterium colombiense DSM
12261]
Length = 347
Score = 203 bits (516), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 109/281 (38%), Positives = 168/281 (59%), Gaps = 20/281 (7%)
Query: 73 DSSDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCN 132
++S D T K L +LQ+G +E+V++ + G +T CISSQVGC + C
Sbjct: 74 ETSKDGTRKFLWQLQDGQRIESVLLSH--------------GNHNTACISSQVGCPLACA 119
Query: 133 FCATGTMGFKSNLSSGEIVEQLVHASRLS--NIRNVVFMGMGEPLNNYAALVEAVRIMTG 190
FCATG GF NL+ GEIV Q + + + NI N+VFMGMGEPL N AL ++++I+
Sbjct: 120 FCATGKGGFVRNLTPGEIVGQFLAMEKAAGQNITNIVFMGMGEPLLNQEALFKSIKILNH 179
Query: 191 LPFQ-VSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEK 249
+ + + +T+ST GIV I + L+VSLH +R ++MP + +PL
Sbjct: 180 PKMRGLGARHMTISTAGIVPGIRALTELEIPVRLSVSLHGTNDMLRNKLMPINQQYPLGS 239
Query: 250 LMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQ 309
L+ AL++YQ+ + ++ IEY+M+D VND + A++L L+ + VNLIP+NP+ +
Sbjct: 240 LIEALRDYQQKTGDRVTIEYVMIDRVNDNTEQAYELAALMNGLSIYVNLIPYNPVDAT-- 297
Query: 310 FRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 350
+R SS +++ +F KIL NI +R++ G DI+ ACGQL
Sbjct: 298 YRRSSQERIKAFGKIL-SELNIEYEIRREKGSDINAACGQL 337
>gi|304404145|ref|ZP_07385807.1| radical SAM enzyme, Cfr family [Paenibacillus curdlanolyticus YK9]
gi|304347123|gb|EFM12955.1| radical SAM enzyme, Cfr family [Paenibacillus curdlanolyticus YK9]
Length = 356
Score = 203 bits (516), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 117/316 (37%), Positives = 177/316 (56%), Gaps = 27/316 (8%)
Query: 43 WDEFPSLPSAAYSLLRSKFKPLTSTLHSVVDSSDDVTTKLLVKLQNGGFVEAVIMRYDSS 102
+DE +LP A L +F +T + + +S D T K L L + +E V+MR++
Sbjct: 50 FDEMSNLPKAFRQKLDDQFAFVTLSEITKFESKDG-TVKFLFGLHDNHAIETVVMRHNYG 108
Query: 103 LGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN 162
+++C+++QVGC++GC FCA+ G K NL++GEIV Q+V A +L +
Sbjct: 109 --------------NSICVTTQVGCRVGCTFCASTLGGLKRNLTAGEIVAQVVWAQQLLD 154
Query: 163 IRN-----VVFMGMGEPLNNYAALVEAVRIM---TGLPFQVSPKRITVSTVGIVHAINKF 214
N +V MG GEP NY + +RIM GL + + ITVST GIV I KF
Sbjct: 155 ATNERVSSIVIMGTGEPFENYEPTMNFLRIMIHEKGL--NIGQRHITVSTSGIVPNIYKF 212
Query: 215 HSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDG 274
+ +NLA+S+HAP +R ++MP R FP +M +L+ Y + ++I EY ++ G
Sbjct: 213 ADENTQINLAISIHAPNDALRSKLMPVNRRFPFNDVMESLRYYIAKTGRRITFEYALIGG 272
Query: 275 VNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTT 334
VND +HA +L ++L+ VNLIP N + + RT DD + FQ+IL + I T
Sbjct: 273 VNDRPEHAEELAQVLQGMLCHVNLIPVNHVPERNYVRTPRDD-IFEFQRILE-KHKINAT 330
Query: 335 VRKQMGQDISGACGQL 350
+R++ G DI+ ACGQL
Sbjct: 331 IRREQGHDIAAACGQL 346
>gi|440713418|ref|ZP_20894019.1| radical SAM domain protein [Rhodopirellula baltica SWK14]
gi|436441884|gb|ELP35076.1| radical SAM domain protein [Rhodopirellula baltica SWK14]
Length = 364
Score = 203 bits (516), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 115/309 (37%), Positives = 173/309 (55%), Gaps = 22/309 (7%)
Query: 68 LHSVVDSSDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGC 127
L+ +DS D TKLL + ++G +E+VI+R + R+TLC+SSQ+GC
Sbjct: 49 LYQRMDSEIDGATKLLFETESGMLIESVILRIATG-------------RTTLCVSSQIGC 95
Query: 128 KMGCNFCATGTMGFKSNLSSGEIVEQLVHASRL-----SNIRNVVFMGMGEPLNNYAALV 182
C+FCATG MG NL++ EI++Q+V A ++ + N+VFMGMGEPL+N +
Sbjct: 96 AAACDFCATGKMGIAKNLATEEILDQVVQAGQILRGEDRRLSNIVFMGMGEPLHNEVNVT 155
Query: 183 EAVRIMTGLP-FQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPA 241
EA+ ++T F SP + VSTVG+ + + P LNLA+SLH+ Q R +I+P
Sbjct: 156 EAIELLTASDHFARSPSTVLVSTVGVPSGMLRLAKRFPSLNLALSLHSADQTTREKIIPL 215
Query: 242 ARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPF 301
+ L +L + + E Q ++ IEY+ML VND + A++L + +V VNLIP+
Sbjct: 216 GKKASLTQLHDTILEIQTTQDREFMIEYLMLRDVNDSAEDANRLIDWIGDLRVHVNLIPY 275
Query: 302 NPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLV--VNLPDKIS 359
N I + S + SF IL+ S ++TTVR +G DI ACGQL+ N +
Sbjct: 276 NTIEASPHLHASPRPVIESFADILKAS-GLKTTVRYSLGNDIEAACGQLIRQENRQRAMQ 334
Query: 360 AKSTPPVTD 368
A+ T +D
Sbjct: 335 ARRTESESD 343
>gi|318056586|ref|ZP_07975309.1| ribosomal RNA large subunit methyltransferase N [Streptomyces sp.
SA3_actG]
gi|318075677|ref|ZP_07983009.1| ribosomal RNA large subunit methyltransferase N [Streptomyces sp.
SA3_actF]
Length = 369
Score = 203 bits (516), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 125/350 (35%), Positives = 186/350 (53%), Gaps = 41/350 (11%)
Query: 18 FEKAGIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHSVVDSSDD 77
F + QH+ +Y ++P +W + +P+AA L+ P ++ + DD
Sbjct: 43 FRAKQLSQHYFA---RYA-QDP-AQWTD---IPAAARGRLQEALLPELMSVVRHISCDDD 94
Query: 78 VTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATG 137
T K L +L +G VE+V+MRY R T+CISSQ GC M C FCATG
Sbjct: 95 TTRKTLWRLFDGTLVESVLMRYPD--------------RVTMCISSQAGCGMNCPFCATG 140
Query: 138 TMGFKSNLSSGEIVEQLVHASRL----------SNIRNVVFMGMGEPLNNYAALVEAVRI 187
G NLS+ EIV Q+V R + + N+VFMGMGEPL NY +V A+R
Sbjct: 141 QAGLDRNLSTAEIVHQIVEGMRALRDGEIPGGPARLSNIVFMGMGEPLANYNRVVGAIRR 200
Query: 188 MT-----GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAA 242
+T GL +S + ITVSTVG+V AI++F + LAVSLHAP ++R ++P
Sbjct: 201 LTDPEPDGL--GLSQRGITVSTVGLVPAIHRFADEGFKCRLAVSLHAPDDELRDTLVPVN 258
Query: 243 RAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFN 302
+ + ++++A EY + S +++ IEY ++ +ND+ LG+LL+ +V VNLIP N
Sbjct: 259 TRWKVREVLDAAWEYAEKSGRRVSIEYALIRDINDQAWRGDLLGRLLKNKRVHVNLIPLN 318
Query: 303 PIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVV 352
P + +D+ + I ++ + TVR GQ+I GACGQL
Sbjct: 319 PTPGSKWTASRPEDERAFVDAI--AAHGVPVTVRDTRGQEIDGACGQLAA 366
>gi|259047489|ref|ZP_05737890.1| Cfr family radical SAM enzyme [Granulicatella adiacens ATCC 49175]
gi|259035680|gb|EEW36935.1| Cfr family radical SAM enzyme [Granulicatella adiacens ATCC 49175]
Length = 371
Score = 202 bits (515), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 115/346 (33%), Positives = 189/346 (54%), Gaps = 28/346 (8%)
Query: 16 AEFEKAGIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKFK-PLTSTLHSVVDS 74
A FE G K+ +W ++ ++E +LP A L+ +F P+ + +
Sbjct: 28 AWFEAKGEKKFRAGQLWDWLYRKRVTSFEEMTNLPKALIEELQEEFTFPVLN--ERIKQQ 85
Query: 75 SDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFC 134
S D T K L +L +G +E V+M + L ++C+++QVGC +GC FC
Sbjct: 86 STDGTRKFLFELADGLLIETVLMPQEYGL--------------SICVTTQVGCNIGCTFC 131
Query: 135 ATGTMGFKSNLSSGEIVEQLVHASRL-------SNIRNVVFMGMGEPLNNYAALVEAVRI 187
A+G + + +L +GEIV Q++H R + ++V MG+GEP +NY +++ +++
Sbjct: 132 ASGIIAKQRDLVAGEIVAQVMHVQRTLDEVSPGDRVSHIVVMGIGEPFDNYDNVIKFLKV 191
Query: 188 M-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFP 246
+ + + + ITVST G+ I +F + +NLA+SLHAP D R +IM R +P
Sbjct: 192 VNSDKGLGIGARHITVSTSGLAPKIREFADEGLQVNLALSLHAPDNDTRSRIMRINRKYP 251
Query: 247 LEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVV--VNLIPFNPI 304
+E +M+A+ EY + +++ EYIMLD VND + A QL LL + + VNLIP+N +
Sbjct: 252 IEVVMDAINEYIAKTNRRVTFEYIMLDHVNDSVEQAQQLADLLADKKRLSYVNLIPYNKV 311
Query: 305 GSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 350
Q+ S ++V +F +L+ ++ I VRK+ G DI ACGQL
Sbjct: 312 REHDQYERSGKERVVAFYDVLKKNH-INCVVRKEFGHDIEAACGQL 356
>gi|406881559|gb|EKD29588.1| hypothetical protein ACD_78C00346G0001, partial [uncultured
bacterium (gcode 4)]
Length = 264
Score = 202 bits (515), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 116/272 (42%), Positives = 155/272 (56%), Gaps = 22/272 (8%)
Query: 89 GGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSG 148
G F+EAVIMR+ S R+TLC+S QVGC M C+FCATG +GF NL
Sbjct: 1 GKFLEAVIMRHLSG-------------RNTLCVSCQVGCPMACSFCATGKLGFTRNLDFT 47
Query: 149 EIVEQL---VH--ASRLSNIRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITV 202
EIVEQ+ VH A +RNVV+MGMGEP NY + ++ I + +S +RITV
Sbjct: 48 EIVEQMMIAVHHLAKEDKRLRNVVYMGMGEPFLNYENVRHSIEIACSQKKLDLSSRRITV 107
Query: 203 STVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQ 262
ST GI+ I K D P ++LA+SLHAP + R IMP + +PL LM AL Y +
Sbjct: 108 STCGIIPGIQKIAEDFPQVSLAISLHAPTDEARRVIMPVEQTYPLANLMEALDAYVVKTN 167
Query: 263 QKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNP--IGSVSQFRTSSDDKVSS 320
++IF EYIM++G+ D ++A L LL VN IP+NP S S+ +S +
Sbjct: 168 KRIFYEYIMINGLTDRPEYAKALADLLHGRLAHVNFIPYNPGEGSSDSKMLPTSKVMIKK 227
Query: 321 FQKILRGSYNIRTTVRKQMGQDISGACGQLVV 352
FQ L + + +T+R MG DI ACGQL +
Sbjct: 228 FQDALELA-GVPSTIRHTMGDDIDAACGQLAL 258
>gi|171778734|ref|ZP_02919830.1| hypothetical protein STRINF_00682 [Streptococcus infantarius subsp.
infantarius ATCC BAA-102]
gi|171282691|gb|EDT48115.1| 23S rRNA m2A2503 methyltransferase [Streptococcus infantarius
subsp. infantarius ATCC BAA-102]
Length = 366
Score = 202 bits (515), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 118/346 (34%), Positives = 190/346 (54%), Gaps = 34/346 (9%)
Query: 22 GIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKF--KPLTSTLHSVVDSSDDVT 79
G K+ IW ++ ++E ++ ++L F PL VV + D T
Sbjct: 28 GEKKFRATQIWDWLYRKRVQSFEEMTNISKDFIAILNENFCVNPLK---QRVVQEASDGT 84
Query: 80 TKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTM 139
K L +L + +E V+MR L ++C++SQVGC +GC+FCA+G +
Sbjct: 85 VKYLFELPDSMLIETVLMRQHYGL--------------SVCVTSQVGCNIGCSFCASGLI 130
Query: 140 GFKSNLSSGEIVEQLVHASRLSNIR-------NVVFMGMGEPLNNYAALVEAVRIMT--- 189
+ +L+SGEI Q++ + + R +VV MG+GEP +NY ++ VR +
Sbjct: 131 KKQRDLTSGEITSQIMMVQKYFDERGQDERVSHVVVMGIGEPFDNYDNVLRFVRTINNDN 190
Query: 190 GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEK 249
GL + + IT+ST G+ H I +F + +NLAVSLHAP ++R QIM R+FPLEK
Sbjct: 191 GLA--IGARHITISTSGLAHKIREFAHESLQVNLAVSLHAPNNELRSQIMRVNRSFPLEK 248
Query: 250 LMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVV--VNLIPFNPIGSV 307
L A++ Y + + +++ EYIML+ VND ++A +L L + + + +NLIP+NP+
Sbjct: 249 LFTAIEYYIETTNRRVTFEYIMLNDVNDSPENAQELADLTKKIRKLSYINLIPYNPVSEH 308
Query: 308 SQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVN 353
Q+R SS + V++F +L+ + + VR++ G DI ACGQL N
Sbjct: 309 DQYRRSSKEHVAAFYDVLKKN-GVNCVVRQEHGTDIDAACGQLRSN 353
>gi|256619523|ref|ZP_05476369.1| conserved hypothetical protein [Enterococcus faecalis ATCC 4200]
gi|307275985|ref|ZP_07557118.1| radical SAM enzyme, Cfr family [Enterococcus faecalis TX2134]
gi|422696415|ref|ZP_16754376.1| radical SAM enzyme, Cfr family [Enterococcus faecalis TX4244]
gi|256599050|gb|EEU18226.1| conserved hypothetical protein [Enterococcus faecalis ATCC 4200]
gi|306507315|gb|EFM76452.1| radical SAM enzyme, Cfr family [Enterococcus faecalis TX2134]
gi|315146175|gb|EFT90191.1| radical SAM enzyme, Cfr family [Enterococcus faecalis TX4244]
Length = 357
Score = 202 bits (515), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 119/345 (34%), Positives = 185/345 (53%), Gaps = 30/345 (8%)
Query: 18 FEKAGIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHSVVDSSDD 77
F G K+ +W+++ + E ++ + +LL F L +V + D
Sbjct: 18 FLAHGEKKFRATQVWEWLYTKRVASFSEMSNISKSLMTLLEENF-SLNPLKQVIVQEAQD 76
Query: 78 VTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATG 137
T K L +L + +E V+MR + L ++C+++QVGC +GC FCA+G
Sbjct: 77 GTVKYLFELPDKNMIETVLMRQEYGL--------------SVCVTTQVGCNIGCTFCASG 122
Query: 138 TMGFKSNLSSGEIVEQLVHASRLSNIR-------NVVFMGMGEPLNNYAALVEAVRIMT- 189
+ + +L++GEIV Q++ + R +VV MG+GEP +NY ++ +R +
Sbjct: 123 LLKKQRDLTAGEIVAQIMWVQHYFDERGLDERVSHVVVMGIGEPFDNYVNVMNFLRTIND 182
Query: 190 --GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPL 247
GL + + ITVST G+V I +F +NLA+SLHAP +VR IM R+FP+
Sbjct: 183 DKGLA--IGARHITVSTSGLVPKIREFADSGLQVNLAISLHAPNNEVRTSIMRINRSFPI 240
Query: 248 EKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVV--VNLIPFNPIG 305
EKLM A+ EY + + +++ EYIML VND +HA QL LL + + VNLIP+NP+
Sbjct: 241 EKLMAAIDEYIEKTNRRVTFEYIMLSQVNDRPEHAQQLADLLRNKKKLSYVNLIPYNPVS 300
Query: 306 SVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 350
Q+ SS + V F +L+ + I +RK+ G DI ACGQL
Sbjct: 301 EHDQYSRSSKEAVLKFYDVLKKN-GINCVIRKEHGTDIDAACGQL 344
>gi|302522180|ref|ZP_07274522.1| ribosomal RNA large subunit methyltransferase N [Streptomyces sp.
SPB78]
gi|302431075|gb|EFL02891.1| ribosomal RNA large subunit methyltransferase N [Streptomyces sp.
SPB78]
Length = 372
Score = 202 bits (515), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 125/350 (35%), Positives = 186/350 (53%), Gaps = 41/350 (11%)
Query: 18 FEKAGIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHSVVDSSDD 77
F + QH+ +Y ++P +W + +P+AA L+ P ++ + DD
Sbjct: 46 FRAKQLSQHYFA---RYA-QDP-AQWTD---IPAAARGRLQEALLPELMSVVRHISCDDD 97
Query: 78 VTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATG 137
T K L +L +G VE+V+MRY R T+CISSQ GC M C FCATG
Sbjct: 98 TTRKTLWRLFDGTLVESVLMRYPD--------------RVTMCISSQAGCGMNCPFCATG 143
Query: 138 TMGFKSNLSSGEIVEQLVHASRL----------SNIRNVVFMGMGEPLNNYAALVEAVRI 187
G NLS+ EIV Q+V R + + N+VFMGMGEPL NY +V A+R
Sbjct: 144 QAGLDRNLSTAEIVHQIVEGMRALRDGEIPGGPARLSNIVFMGMGEPLANYNRVVGAIRR 203
Query: 188 MT-----GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAA 242
+T GL +S + ITVSTVG+V AI++F + LAVSLHAP ++R ++P
Sbjct: 204 LTDPEPDGL--GLSQRGITVSTVGLVPAIHRFADEGFKCRLAVSLHAPDDELRDTLVPVN 261
Query: 243 RAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFN 302
+ + ++++A EY + S +++ IEY ++ +ND+ LG+LL+ +V VNLIP N
Sbjct: 262 TRWKVREVLDAAWEYAEKSGRRVSIEYALIRDINDQAWRGDLLGRLLKNKRVHVNLIPLN 321
Query: 303 PIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVV 352
P + +D+ + I ++ + TVR GQ+I GACGQL
Sbjct: 322 PTPGSKWTASRPEDERAFVDAI--AAHGVPVTVRDTRGQEIDGACGQLAA 369
>gi|389704826|ref|ZP_10185930.1| putative Fe-S-cluster redox enzyme [Acinetobacter sp. HA]
gi|388611070|gb|EIM40179.1| putative Fe-S-cluster redox enzyme [Acinetobacter sp. HA]
Length = 411
Score = 202 bits (515), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 118/302 (39%), Positives = 179/302 (59%), Gaps = 32/302 (10%)
Query: 75 SDDVTTKLLVKLQNG--GFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCN 132
S D T K + ++ +G VE V++ + G R TLCISSQVGC + C+
Sbjct: 101 SKDGTRKWVFRVGDGEGSLVETVLIPAEDKTGS----------RKTLCISSQVGCALDCS 150
Query: 133 FCATGTMGFKSNLSSGEIVEQLVHAS-----------RLSNIRNVVFMGMGEPLNNYAAL 181
FC+TG GF+ +LS EI+ QL A+ R ++ NVV MGMGEPL NY A+
Sbjct: 151 FCSTGKQGFQRDLSQAEIIGQLWMANYSYMEDVPVAERERSVTNVVMMGMGEPLLNYDAV 210
Query: 182 VEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMP 240
+ ++RIM + +S +R+T+ST G+V I++ D+ + LA+SLHAP ++R +++P
Sbjct: 211 LSSMRIMLDDFAYGMSKRRVTLSTSGVVPKIDQLAQDI-DVALAISLHAPNDELRNELVP 269
Query: 241 AARAFPLEKLMNALKEY-----QKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVV 295
+ +PLE L+ A + Y +++++ + IEY+MLDGVND+ +HA Q+ KLL+
Sbjct: 270 INKKYPLEHLIAACQRYITKDGNESARKHVTIEYVMLDGVNDKPEHAQQMIKLLKNLPSK 329
Query: 296 VNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLP 355
+NLIPFNP R SS +++ SFQK L + + T+R+ G DI ACGQLV +
Sbjct: 330 INLIPFNPFPHAPYGR-SSRNRIISFQKTLSDAGFV-CTIRQTRGDDIDAACGQLVGQVA 387
Query: 356 DK 357
D+
Sbjct: 388 DR 389
>gi|297191769|ref|ZP_06909167.1| ribosomal RNA large subunit methyltransferase N [Streptomyces
pristinaespiralis ATCC 25486]
gi|197721713|gb|EDY65621.1| ribosomal RNA large subunit methyltransferase N [Streptomyces
pristinaespiralis ATCC 25486]
Length = 368
Score = 202 bits (515), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 119/324 (36%), Positives = 176/324 (54%), Gaps = 33/324 (10%)
Query: 45 EFPSLPSAAYSLLRSKFKPLTSTLHSVVDSSDDVTTKLLVKLQNGGFVEAVIMRYDSSLG 104
++ +P+AA L ++ P ++ + DD T K L +L +G VE+V+MRY
Sbjct: 61 QWTDIPAAAREKLATELLPDLMSVVRHISCDDDTTRKTLWRLHDGTLVESVLMRYPD--- 117
Query: 105 KYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRL---- 160
R T+CISSQ GC M C FCATG G NLS+ EIV Q+V R
Sbjct: 118 -----------RVTMCISSQAGCGMNCPFCATGQAGLDRNLSTAEIVHQIVDGMRALRDG 166
Query: 161 ------SNIRNVVFMGMGEPLNNYAALVEAVRIMT-----GLPFQVSPKRITVSTVGIVH 209
+ + N+VFMGMGEPL NY +V A+R +T GL +S + ITVSTVG+V
Sbjct: 167 EVPGGPARLSNIVFMGMGEPLANYKRVVGAIRRLTDPEPDGL--GLSQRGITVSTVGLVP 224
Query: 210 AINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEY 269
A+ +F + LAVSLHAP ++R ++P + + ++++A EY + S ++I IEY
Sbjct: 225 AMLRFADEGFKCRLAVSLHAPDDELRDTLVPVNTRWKVREVLDAAWEYAEKSGRRISIEY 284
Query: 270 IMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSY 329
++ +ND+ LG+LL+ +V VNLIP NP + +D+ + + I ++
Sbjct: 285 ALIRDINDQAWRGDLLGRLLKGKRVHVNLIPLNPTPGSKWTASRPEDEKAFVEAI--AAH 342
Query: 330 NIRTTVRKQMGQDISGACGQLVVN 353
+ TVR GQ+I GACGQL
Sbjct: 343 GVPVTVRDTRGQEIDGACGQLAAQ 366
>gi|424780017|ref|ZP_18206902.1| Ribosomal RNA large subunit methyltransferase N [Catellicoccus
marimammalium M35/04/3]
gi|422843349|gb|EKU27787.1| Ribosomal RNA large subunit methyltransferase N [Catellicoccus
marimammalium M35/04/3]
Length = 351
Score = 202 bits (515), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 119/357 (33%), Positives = 196/357 (54%), Gaps = 38/357 (10%)
Query: 12 GIIRAEFE----KAGIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKF--KPLT 65
G+ R E E + G K+ +W ++ + E +L + ++L F PL
Sbjct: 7 GLTRPEMEAWFIEHGEKKFRATQVWDWLYRKRVNSFAEMTNLKAPVIAMLEENFVINPLK 66
Query: 66 STLHSVVDSSDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQV 125
S++ S D T K L +L + +E V+MR+ L ++C+++QV
Sbjct: 67 E---SIIQKSSDGTIKYLFELSDHQLIETVLMRHKYGL--------------SVCVTTQV 109
Query: 126 GCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRL-------SNIRNVVFMGMGEPLNNY 178
GC MGC+FCA+G + +L++GEIV Q++ R + ++V MG+GEP +NY
Sbjct: 110 GCNMGCSFCASGLRKKQRDLTAGEIVSQVMQVQRYLDAQGNDERVSHIVVMGIGEPFDNY 169
Query: 179 AALVEAVRIMT---GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVR 235
++ +R++ GL + + ITVST GIV I +F + +NLA+SLHAP ++R
Sbjct: 170 DNVMTFLRVVNDDKGLA--IGARHITVSTCGIVPKIRQFTKEGLQVNLALSLHAPNDEIR 227
Query: 236 CQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVV 295
+IM RAF LE +M+AL +Y + +++ EYIM+ VND+++HA +L +LL+ + +
Sbjct: 228 TKIMKINRAFKLEDVMDALFDYMDETNRRVTFEYIMIHNVNDQKEHAKELVELLKDHKKL 287
Query: 296 --VNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 350
VNLIP+NP+ ++ S D + +F IL+ + I +R++ G DI ACGQL
Sbjct: 288 CYVNLIPYNPVNEHVDYQRSELDDILAFYDILKKN-GINCVIRQEHGTDIDAACGQL 343
>gi|268678701|ref|YP_003303132.1| radical SAM enzyme, Cfr family [Sulfurospirillum deleyianum DSM
6946]
gi|268616732|gb|ACZ11097.1| radical SAM enzyme, Cfr family [Sulfurospirillum deleyianum DSM
6946]
Length = 358
Score = 202 bits (515), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 122/328 (37%), Positives = 188/328 (57%), Gaps = 14/328 (4%)
Query: 31 IWKYVIENPNCEWDEFPSLPSAAYSLLRSKF--KPLTSTLHSVVDSSDDVTTKLLVKLQN 88
I++++ + +DE +LP L + PL ++ S D + K L L++
Sbjct: 27 IYQWLYQKYVTSFDEMKNLPKELKEQLNETYYLDPLRIV---TIEESCDGSKKYLFALKD 83
Query: 89 GGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSG 148
VEAV++ GK R T+CISSQVGCK+GC FC TG GFK NL++G
Sbjct: 84 NQTVEAVLLPMKQEQVDEEGKL-VHHARYTICISSQVGCKIGCAFCLTGKSGFKRNLTAG 142
Query: 149 EIVEQLVHASRLSNIR-----NVVFMGMGEPLNNYAALVEAVRIMTGLP-FQVSPKRITV 202
EI Q++ R + I N+V+MGMGEPL+N + +AVRI + L +SP+R T+
Sbjct: 143 EITTQVLMIKRDNAIAENRRVNIVYMGMGEPLDNLTNVSKAVRIFSDLDGLSISPRRQTI 202
Query: 203 STVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQ 262
ST G+ I K G+ LA+SLHA D+R ++MP +A+ +E +MNA++ + +++
Sbjct: 203 STSGLSSQIEKLGKMDLGILLAISLHAVDDDLRQKLMPINKAYNIESIMNAVRGFPIDAR 262
Query: 263 QKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQ 322
+++ EY+++ GVND+++ A +L KLL + VNLI FNP R S+ D + +FQ
Sbjct: 263 KRVMFEYLVMKGVNDDQKSAKKLVKLLHGIKAKVNLIYFNPHAGSDFDRPSTKDMI-AFQ 321
Query: 323 KILRGSYNIRTTVRKQMGQDISGACGQL 350
+ L + + T+R+ G DIS ACGQL
Sbjct: 322 QYLV-DHGVLCTIRQSKGLDISAACGQL 348
>gi|221066031|ref|ZP_03542136.1| radical SAM enzyme, Cfr family [Comamonas testosteroni KF-1]
gi|220711054|gb|EED66422.1| radical SAM enzyme, Cfr family [Comamonas testosteroni KF-1]
Length = 373
Score = 202 bits (515), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 133/368 (36%), Positives = 198/368 (53%), Gaps = 34/368 (9%)
Query: 9 FDGGIIRAEFEKAGIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTL 68
FD + A E+ G K+ +++++ + ++D+ L + L+S+ +T+
Sbjct: 8 FDLEGLTAYCEQLGEKRFRATQLFRWIHQRGASDFDQMTDLAKSLREKLKSRAH-ITALP 66
Query: 69 HSVVDSSDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCK 128
S D T K L + +G VE+V + P R TLC+SSQ GC
Sbjct: 67 VVTEHVSADGTVKWLFDVGDGNAVESVFI--------------PEDDRGTLCVSSQAGCA 112
Query: 129 MGCNFCATGTMGFKSNLSSGEIVEQLVHAS-----RLSN----IRNVVFMGMGEPLNNYA 179
+GC FC+TG GF NL +GEI+ QL +A R I NVV MGMGEPL NY+
Sbjct: 113 VGCRFCSTGHQGFSRNLDTGEILAQLWYAEHSLRKRFGTEDRIISNVVMMGMGEPLQNYS 172
Query: 180 ALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQI 238
ALV A+R+M + +S +R+TVST G+V +++ D + LAVSLHAP +R +
Sbjct: 173 ALVPALRVMLDDHGYGLSRRRVTVSTSGVVPMMDRLSQDC-AVALAVSLHAPNDPLRDNL 231
Query: 239 MPAARAFPLEKLMNALKEYQKNSQQK-IFIEYIMLDGVNDEEQHAHQLGKLLET-----F 292
+P R +P+ +L++A + Y + + + I EY MLDGVND+ +HA QL +L+
Sbjct: 232 VPLNRKYPIAELLDACERYLEFAPRDFITFEYCMLDGVNDQPEHARQLIELVRARGDGKS 291
Query: 293 QVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVV 352
NLIPFNP + R+S+ +V+ F +L + I TTVRK G DI ACGQL
Sbjct: 292 WCKFNLIPFNPFPASGLLRSSA-ARVTEFATMLSNA-GIVTTVRKTRGDDIDAACGQLAG 349
Query: 353 NLPDKISA 360
++ D+ A
Sbjct: 350 DVKDRTRA 357
>gi|120554052|ref|YP_958403.1| radical SAM protein [Marinobacter aquaeolei VT8]
gi|387814569|ref|YP_005430055.1| Fe-S protein [Marinobacter hydrocarbonoclasticus ATCC 49840]
gi|205829787|sp|A1TZP7.1|RLMN_MARAV RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|120323901|gb|ABM18216.1| 23S rRNA m(2)A-2503 methyltransferase [Marinobacter aquaeolei VT8]
gi|381339585|emb|CCG95632.1| putative Fe-S containing enzyme (yfgB) [Marinobacter
hydrocarbonoclasticus ATCC 49840]
Length = 369
Score = 202 bits (515), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 122/358 (34%), Positives = 199/358 (55%), Gaps = 35/358 (9%)
Query: 14 IRAEFEKAGIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHSVV- 72
+ A FE G K+ + +++ + ++D+ ++ + LR + K + V
Sbjct: 18 LEAFFETLGEKRFRAQQVLQWMHQRGVDDFDQMTNMSKS----LREQLKEVAEIRGPEVV 73
Query: 73 --DSSDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMG 130
++S D T K ++++ NG VE V++ P G R TLC+SSQ+GC +
Sbjct: 74 YDETSKDGTRKWVMRMDNGNSVETVLI--------------PDGERGTLCVSSQIGCSLD 119
Query: 131 CNFCATGTMGFKSNLSSGEIVEQLVHASRL--------SNIRNVVFMGMGEPLNNYAALV 182
C FC+TG GF NL++ EI+ Q+ A R I NVV MGMGEPL N+ +V
Sbjct: 120 CTFCSTGKRGFNRNLTAAEIIGQVWVARRAFMPFDPNDRPITNVVMMGMGEPLLNFENVV 179
Query: 183 EAVRI-MTGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPA 241
+A+ + M L + +S +R+T+ST G+V A+++ ++ ++LA+SLHAP ++R Q++P
Sbjct: 180 DAMNLMMEDLAYGISKRRVTLSTSGVVPALDRL-GEVTDVSLAISLHAPNDELRNQLVPL 238
Query: 242 ARAFPLEKLMNALKEYQKN--SQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLI 299
+ +P+ +L+ A + Y ++K IEY +++GVND+ +HA +L LL+ +NLI
Sbjct: 239 NKKYPIAELLAATRRYLSRLPDKRKATIEYTVIEGVNDQPEHARELVVLLKGLPCKINLI 298
Query: 300 PFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDK 357
PFNP S FR S + FQ +L + + TT+R G DI ACGQLV + D+
Sbjct: 299 PFNPFPE-SDFRRPSMNATRRFQTVLNEAGYV-TTIRTTRGDDIDAACGQLVGRVEDR 354
>gi|333913248|ref|YP_004486980.1| ribosomal RNA large subunit methyltransferase N [Delftia sp. Cs1-4]
gi|333743448|gb|AEF88625.1| Ribosomal RNA large subunit methyltransferase N [Delftia sp. Cs1-4]
Length = 397
Score = 202 bits (515), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 137/372 (36%), Positives = 197/372 (52%), Gaps = 41/372 (11%)
Query: 9 FDGGIIRAEFEKAGIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKP---LT 65
FD + A E+ G K+ +++++ + ++D+ L + LR K K +T
Sbjct: 31 FDLDGLAAYCEQLGEKRFRATQLFRWIHQRGASDFDQMSDLAKS----LREKLKACAHIT 86
Query: 66 STLHSVVDSSDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQV 125
+ S D T K L + G VEAV + P R TLC+SSQ
Sbjct: 87 ALPVLTEHVSADGTVKWLFDVGGGDAVEAVFI--------------PEDDRGTLCVSSQA 132
Query: 126 GCKMGCNFCATGTMGFKSNLSSGEIVEQLVHAS-----RLSN-----IRNVVFMGMGEPL 175
GC +GC FC+TG GF NLS+GEI+ QL +A RL I NVV MGMGEPL
Sbjct: 133 GCAVGCRFCSTGHQGFSRNLSTGEILAQLWYAEHALRKRLGTGGERVISNVVMMGMGEPL 192
Query: 176 NNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDV 234
NY ALV A+R M + +S +R+TVST G+V I++ D + +AVSLHAP ++
Sbjct: 193 QNYTALVPALRAMLDDHGYGLSRRRVTVSTSGVVPMIDRLSQDC-AVAMAVSLHAPNDEL 251
Query: 235 RCQIMPAARAFPLEKLMNALKEYQKNSQQK-IFIEYIMLDGVNDEEQHAHQLGKLLET-- 291
R ++P R +P+ +L++A + Y + + + I EY MLDGVND+ +HA QL +L+
Sbjct: 252 RDPLVPLNRKYPIHELLDACERYLEFAPRDFITFEYCMLDGVNDQPEHARQLIELVRARG 311
Query: 292 ---FQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACG 348
NLIPFNP + R+ + +V+ F +L + I TTVRK G DI ACG
Sbjct: 312 DGRSWCKFNLIPFNPFPASGLLRSPA-ARVTEFASLLSNA-GIVTTVRKTRGDDIDAACG 369
Query: 349 QLVVNLPDKISA 360
QL ++ D+ A
Sbjct: 370 QLAGDVKDRTRA 381
>gi|336236099|ref|YP_004588715.1| ribosomal RNA large subunit methyltransferase N [Geobacillus
thermoglucosidasius C56-YS93]
gi|423720640|ref|ZP_17694822.1| ribosomal RNA large subunit methyltransferase N, radical SAM
superfamily [Geobacillus thermoglucosidans TNO-09.020]
gi|335362954|gb|AEH48634.1| Ribosomal RNA large subunit methyltransferase N [Geobacillus
thermoglucosidasius C56-YS93]
gi|383365993|gb|EID43284.1| ribosomal RNA large subunit methyltransferase N, radical SAM
superfamily [Geobacillus thermoglucosidans TNO-09.020]
Length = 364
Score = 202 bits (515), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 110/327 (33%), Positives = 190/327 (58%), Gaps = 25/327 (7%)
Query: 31 IWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHSVV-DSSDDVTTKLLVKLQNG 89
I++++ + + E +LP A L F +TL ++V +S D T K L +L +G
Sbjct: 46 IYEWLYQKRVTHFSEMTNLPKALREKLSGHFD--ITTLKTLVKQTSKDGTMKFLFELHDG 103
Query: 90 GFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGE 149
+E V+MR++ +++C+++QVGC++GC FCA+ G K +L +GE
Sbjct: 104 YSIETVLMRHNYG--------------NSICVTTQVGCRIGCTFCASTLGGLKRHLEAGE 149
Query: 150 IVEQLVHASRL-----SNIRNVVFMGMGEPLNNYAALVEAVRIMTGLP-FQVSPKRITVS 203
IV Q+V + I ++V MG+GEP +NY L++ ++I+ + + ITVS
Sbjct: 150 IVAQVVKVQKELDEQNERISSIVVMGIGEPFDNYDELIKFLKIVNHAKGLNIGARHITVS 209
Query: 204 TVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQ 263
T GI+ I +F + +N A+SLHAP ++R ++MP +A+PL KLM+A++ Y + + +
Sbjct: 210 TSGIIPKIYQFADEGMQVNFAISLHAPTTELRTKLMPINKAYPLPKLMDAVRYYIEKTGR 269
Query: 264 KIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQK 323
++ EY + GVND+ +HA QL +L++ + VNLIP N + + RT +++ +F++
Sbjct: 270 RVTFEYGLFGGVNDQLEHAEQLAELIKGLKCHVNLIPVNYVPERNYVRTPR-EQIFAFER 328
Query: 324 ILRGSYNIRTTVRKQMGQDISGACGQL 350
L+ + I T+R++ G DI ACGQL
Sbjct: 329 ALK-KHGINVTIRREQGHDIDAACGQL 354
>gi|404448301|ref|ZP_11013294.1| ribosomal RNA large subunit methyltransferase N [Indibacter
alkaliphilus LW1]
gi|403765922|gb|EJZ26797.1| ribosomal RNA large subunit methyltransferase N [Indibacter
alkaliphilus LW1]
Length = 352
Score = 202 bits (515), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 122/330 (36%), Positives = 180/330 (54%), Gaps = 34/330 (10%)
Query: 31 IWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHSVVD---SSDDVTTKLLVKLQ 87
+W ++N +D+ ++ +L++ F S H VD S+D T K VKL
Sbjct: 37 LWNKSLKN----FDDMSNISKETREMLKANF----SINHVKVDLMQHSNDGTIKNAVKLF 88
Query: 88 NGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSS 147
+ VE+V++ P R T C+SSQVGC + CNFCAT + NL+
Sbjct: 89 DNKIVESVLI--------------PTTKRITACVSSQVGCSLDCNFCATARLKRMRNLNP 134
Query: 148 GEIVEQLVHASRLSN------IRNVVFMGMGEPLNNYAALVEAV-RIMTGLPFQVSPKRI 200
EI +Q+V + + N+VFMGMGEPL NY +++A+ +I + ++P+RI
Sbjct: 135 DEIYDQVVAIKEEAETYFQRPLTNIVFMGMGEPLLNYNNVIDAIDKITSPEGLGMAPRRI 194
Query: 201 TVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKN 260
T+STVGI I K D NLAVSLH+ + + R ++MP PLE L ALK + +
Sbjct: 195 TLSTVGIPKMIKKMADDEVRFNLAVSLHSAIDETRSRLMPINDVNPLEDLAEALKYWYQK 254
Query: 261 SQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSS 320
+++K+ EY++ DG+ND+E+HA L K + VN+I +NPI +FR +S + V
Sbjct: 255 TKRKVTYEYVIWDGINDDERHAKALAKFCKIIPSKVNIIQYNPIDE-GEFRQASQEAVDM 313
Query: 321 FQKILRGSYNIRTTVRKQMGQDISGACGQL 350
+ +IL S I VRK GQDI ACGQL
Sbjct: 314 YVRILE-SNGIIAKVRKSRGQDIDAACGQL 342
>gi|239991102|ref|ZP_04711766.1| hypothetical protein SrosN1_27614 [Streptomyces roseosporus NRRL
11379]
gi|291448102|ref|ZP_06587492.1| conserved hypothetical protein [Streptomyces roseosporus NRRL
15998]
gi|291351049|gb|EFE77953.1| conserved hypothetical protein [Streptomyces roseosporus NRRL
15998]
Length = 368
Score = 202 bits (515), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 120/324 (37%), Positives = 176/324 (54%), Gaps = 33/324 (10%)
Query: 45 EFPSLPSAAYSLLRSKFKPLTSTLHSVVDSSDDVTTKLLVKLQNGGFVEAVIMRYDSSLG 104
E+ ++P+A+ L P ++ + DD T K L KL +G VE+V+MRY
Sbjct: 61 EWTNIPAASREKLAEALFPELMSVIRHISCDDDTTRKTLWKLHDGTLVESVLMRYPE--- 117
Query: 105 KYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRL---- 160
R T+CISSQ GC M C FCATG G NLS+ EIV Q+V R
Sbjct: 118 -----------RVTMCISSQAGCGMNCPFCATGQAGLDRNLSTAEIVHQIVDGMRALRDG 166
Query: 161 ------SNIRNVVFMGMGEPLNNYAALVEAVRIMT-----GLPFQVSPKRITVSTVGIVH 209
+ + N+VFMGMGEPL NY +V A+R +T GL +S + ITVSTVG+V
Sbjct: 167 EVPGGPARLSNIVFMGMGEPLANYKRVVGAIRRLTDPEPDGL--GLSQRGITVSTVGLVP 224
Query: 210 AINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEY 269
A+ +F + LAVSLHAP ++R ++P + + ++++A EY + S ++I IEY
Sbjct: 225 AMLRFADEGFKCRLAVSLHAPDDELRDTLVPVNTRWKVREVLDAAWEYAEKSGRRISIEY 284
Query: 270 IMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSY 329
++ +ND+ LG+LL+ +V VNLIP NP + +D+ + + I ++
Sbjct: 285 ALIRDINDQAWRGDLLGRLLKGKRVHVNLIPLNPTPGSKWTASRPEDEKAFVEAI--AAH 342
Query: 330 NIRTTVRKQMGQDISGACGQLVVN 353
+ TVR GQ+I GACGQL +
Sbjct: 343 GVPVTVRDTRGQEIDGACGQLAAS 366
>gi|374709018|ref|ZP_09713452.1| ribosomal RNA large subunit methyltransferase N [Sporolactobacillus
inulinus CASD]
Length = 359
Score = 202 bits (515), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 118/340 (34%), Positives = 191/340 (56%), Gaps = 28/340 (8%)
Query: 22 GIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHSVVD-SSDDVTT 80
G K+ IW ++ +D+ ++ LL F + TL + ++ + D TT
Sbjct: 22 GEKKFRAAQIWGWIYVKRVNSFDKMTNVSKKTIQLLEDYF--MLGTLETQIEQKAKDGTT 79
Query: 81 KLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMG 140
K L KL +G +E V+M ++ L ++C++SQVGC +GC+FCA+G +
Sbjct: 80 KFLFKLTDGNLIETVLMPHEYGL--------------SVCVTSQVGCNIGCSFCASGLLK 125
Query: 141 FKSNLSSGEIVEQLVHASRLSNIR-------NVVFMGMGEPLNNYAALVEAVRIMT-GLP 192
+L+SGE+VEQL+ + + + ++V MG+GEP +N+ +V ++I+ G
Sbjct: 126 KNRDLTSGEMVEQLMKIQQSLDAKGQDERVGHLVVMGIGEPFDNFDHVVNFLKIINDGSG 185
Query: 193 FQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMN 252
+ + ITVST G+V I F +NLA+SLHAP ++R +IM RA+P+E+LM
Sbjct: 186 LAIGARHITVSTSGLVPKIYDFADLDWQINLAISLHAPNNELRSRIMKINRAYPVEQLME 245
Query: 253 ALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVV--VNLIPFNPIGSVSQF 310
A+ Y K + +++ EYIML G+ND ++ A +L LL+ + + VNLIP+NP+ S++
Sbjct: 246 AVDYYLKKTNRRVTFEYIMLKGINDHKEEAIELANLLKDKRHLSYVNLIPYNPVEEHSEY 305
Query: 311 RTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 350
+ S + V +F + LR I VRK+ G DI ACGQL
Sbjct: 306 QRSDKEAVVTFYETLR-QRGINVVVRKEFGTDIDAACGQL 344
>gi|160900454|ref|YP_001566036.1| radical SAM protein [Delftia acidovorans SPH-1]
gi|160366038|gb|ABX37651.1| radical SAM enzyme, Cfr family [Delftia acidovorans SPH-1]
Length = 397
Score = 202 bits (515), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 137/372 (36%), Positives = 197/372 (52%), Gaps = 41/372 (11%)
Query: 9 FDGGIIRAEFEKAGIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKP---LT 65
FD + A E+ G K+ +++++ + ++D+ L + LR K K +T
Sbjct: 31 FDLDGLAAYCEQLGEKRFRATQLFRWIHQRGASDFDQMSDLAKS----LREKLKACAHIT 86
Query: 66 STLHSVVDSSDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQV 125
+ S D T K L + G VEAV + P R TLC+SSQ
Sbjct: 87 ALPVLTEHVSADGTVKWLFDVGGGDAVEAVFI--------------PEDDRGTLCVSSQA 132
Query: 126 GCKMGCNFCATGTMGFKSNLSSGEIVEQLVHAS-----RLSN-----IRNVVFMGMGEPL 175
GC +GC FC+TG GF NLS+GEI+ QL +A RL I NVV MGMGEPL
Sbjct: 133 GCAVGCRFCSTGHQGFSRNLSTGEILAQLWYAEHSLRKRLGTGGERVISNVVMMGMGEPL 192
Query: 176 NNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDV 234
NY ALV A+R M + +S +R+TVST G+V I++ D + +AVSLHAP ++
Sbjct: 193 QNYTALVPALRAMLDDHGYGLSRRRVTVSTSGVVPMIDRLSQDC-AVAMAVSLHAPNDEL 251
Query: 235 RCQIMPAARAFPLEKLMNALKEYQKNSQQK-IFIEYIMLDGVNDEEQHAHQLGKLLET-- 291
R ++P R +P+ +L++A + Y + + + I EY MLDGVND+ +HA QL +L+
Sbjct: 252 RDPLVPLNRKYPIHELLDACERYLEFAPRDFITFEYCMLDGVNDQPEHARQLIELVRARG 311
Query: 292 ---FQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACG 348
NLIPFNP + R+ + +V+ F +L + I TTVRK G DI ACG
Sbjct: 312 DGRSWCKFNLIPFNPFPASGLLRSPA-ARVTEFASLLSNA-GIVTTVRKTRGDDIDAACG 369
Query: 349 QLVVNLPDKISA 360
QL ++ D+ A
Sbjct: 370 QLAGDVKDRTRA 381
>gi|456012216|gb|EMF45922.1| Ribosomal RNA large subunit methyltransferase N [Planococcus
halocryophilus Or1]
Length = 357
Score = 202 bits (515), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 116/347 (33%), Positives = 192/347 (55%), Gaps = 26/347 (7%)
Query: 14 IRAEFEKAGIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHSVVD 73
++ F + G K++ +W ++ E+ E +L LL F + + +V
Sbjct: 13 LKEWFLENGQKKYRAEQVWDWLYIKRVTEFAEMNNLSKECIQLLEDNF-AIRTLKETVKQ 71
Query: 74 SSDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNF 133
S D T K L K+Q+G +E V+MR+ KY +++C+++QVGC +GC+F
Sbjct: 72 ESADGTIKFLFKMQDGNLIETVLMRF-----KYG---------NSVCVTTQVGCNIGCSF 117
Query: 134 CATGTMGFKSNLSSGEIVEQLVHAS-------RLSNIRNVVFMGMGEPLNNYAALVEAVR 186
CA+G + +L++GEIVEQ++ + + ++V MG+GEP +NY L+ +
Sbjct: 118 CASGLLKKSRDLNAGEIVEQIMQVQAHFDAQQKDERVSHIVVMGIGEPFDNYNNLMGFLN 177
Query: 187 IMTGLP-FQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAF 245
++ + + ITVST GIV I + + +NLA+S+HAP ++R +IM +A+
Sbjct: 178 VVNSQKGLAIGARHITVSTSGIVPKIYDYADEGLQVNLAISIHAPTNELRTRIMKINKAY 237
Query: 246 PLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVV--VNLIPFNP 303
P+EKLM ++ Y + S ++I EYI+L VND + A+QL KLLE + + VNLIP+N
Sbjct: 238 PIEKLMASIDYYLEKSNRRITFEYILLRDVNDHVEEANQLAKLLEDKRHLSYVNLIPYNS 297
Query: 304 IGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 350
+ Q++ S+ + +S+F L+ I VR + G DI ACGQL
Sbjct: 298 VDEHDQYQQSTPEAISAFYDALKKK-GINCGVRHEQGADIDAACGQL 343
>gi|411004858|ref|ZP_11381187.1| ribosomal RNA large subunit methyltransferase N [Streptomyces
globisporus C-1027]
Length = 368
Score = 202 bits (515), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 120/324 (37%), Positives = 176/324 (54%), Gaps = 33/324 (10%)
Query: 45 EFPSLPSAAYSLLRSKFKPLTSTLHSVVDSSDDVTTKLLVKLQNGGFVEAVIMRYDSSLG 104
E+ ++P+A+ L P ++ + DD T K L KL +G VE+V+MRY
Sbjct: 61 EWTNIPAASREKLAEALFPELMSVIRHISCDDDTTRKTLWKLHDGTLVESVLMRYPE--- 117
Query: 105 KYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRL---- 160
R T+CISSQ GC M C FCATG G NLS+ EIV Q+V R
Sbjct: 118 -----------RVTMCISSQAGCGMNCPFCATGQAGLDRNLSTAEIVHQIVDGMRALRDG 166
Query: 161 ------SNIRNVVFMGMGEPLNNYAALVEAVRIMT-----GLPFQVSPKRITVSTVGIVH 209
+ + N+VFMGMGEPL NY +V A+R +T GL +S + ITVSTVG+V
Sbjct: 167 EVPGGPARLSNIVFMGMGEPLANYKRVVGAIRRLTDPEPDGL--GLSQRGITVSTVGLVP 224
Query: 210 AINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEY 269
A+ +F + LAVSLHAP ++R ++P + + ++++A EY + S ++I IEY
Sbjct: 225 AMLRFADEGFKCRLAVSLHAPDDELRDTLVPVNTRWKVREVLDAAWEYAEKSGRRISIEY 284
Query: 270 IMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSY 329
++ +ND+ LG+LL+ +V VNLIP NP + +D+ + + I ++
Sbjct: 285 ALIRDINDQAWRGDLLGRLLKGKRVHVNLIPLNPTPGSKWTASRPEDEKAFVEAI--AAH 342
Query: 330 NIRTTVRKQMGQDISGACGQLVVN 353
+ TVR GQ+I GACGQL +
Sbjct: 343 GVPVTVRDTRGQEIDGACGQLAAS 366
>gi|334135998|ref|ZP_08509477.1| 23S rRNA m2A2503 methyltransferase [Paenibacillus sp. HGF7]
gi|333606611|gb|EGL17946.1| 23S rRNA m2A2503 methyltransferase [Paenibacillus sp. HGF7]
Length = 353
Score = 202 bits (515), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 120/356 (33%), Positives = 191/356 (53%), Gaps = 28/356 (7%)
Query: 5 YRSVFDGGIIRAEFEKAGIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPL 64
Y FD + A + G K+ IW ++ + + + LL F
Sbjct: 7 YGLTFDQ--LTAWLQPYGHKKFRASQIWDWLYRKRVASFADMTDVNKDCLGLLEEHFVLQ 64
Query: 65 TSTLHSVVDSSDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQ 124
T H +SSD T K L +L +G +E V+MR+ L ++C+++Q
Sbjct: 65 TLEEHVKQESSDG-TVKFLFRLSDGNLIETVLMRHKFGL--------------SVCVTTQ 109
Query: 125 VGCKMGCNFCATGTMGFKSNLSSGEIVEQLVH-------ASRLSNIRNVVFMGMGEPLNN 177
VGC +GC+FCA+G + +LS+GEIVEQ++ A + + ++V MG+GEP +N
Sbjct: 110 VGCNIGCSFCASGLLKKSRDLSAGEIVEQIMKVQFYLDKAGKEERVSHIVVMGIGEPFDN 169
Query: 178 YAALVEAVRIMTGLP-FQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRC 236
+ L + +R++ + + ITVST G+ I +F +NLAVSLHAP ++R
Sbjct: 170 FENLSDFLRVVKDHKGLAIGARHITVSTSGLADKIVEFADSDLHVNLAVSLHAPNNELRT 229
Query: 237 QIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQ--V 294
+IM +A P+EKLM+A+ Y + +++ +EYI+L VND +HA +L +L+ + V
Sbjct: 230 RIMKINKAIPIEKLMDAIDYYLGKTNRRLTLEYILLKDVNDAREHAEELAQLIGDRRPLV 289
Query: 295 VVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 350
VNLIP+NP+ SQ++ S + V +F IL+ N+ +VR + G DI ACGQL
Sbjct: 290 NVNLIPYNPVDEHSQYQRSEKESVRAFYDILKKQ-NVSCSVRLEHGADIDAACGQL 344
>gi|358468073|ref|ZP_09177720.1| 23S rRNA m2A2503 methyltransferase [Fusobacterium sp. oral taxon
370 str. F0437]
gi|357065731|gb|EHI75907.1| 23S rRNA m2A2503 methyltransferase [Fusobacterium sp. oral taxon
370 str. F0437]
Length = 358
Score = 202 bits (515), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 124/330 (37%), Positives = 181/330 (54%), Gaps = 23/330 (6%)
Query: 30 LIW--KYVIENPNCEWDEFPSLPSAAYSLLRSK-FKPLTSTLHSVVDSSDDVTTKLLVKL 86
IW K +I N +D+ +L +L+ K + P + L V S D T K L +L
Sbjct: 34 FIWLHKKIIRN----FDDMTNLSLKDREILKEKAYIPFFNLLKHQV-SKLDKTEKFLFEL 88
Query: 87 QNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLS 146
++ G +E V++R+ S K R+TLC+SSQVGC + C+FCATG G+ NLS
Sbjct: 89 EDKGTIETVLLRHRDSKNK--------EIRNTLCVSSQVGCPIKCSFCATGQGGYMRNLS 140
Query: 147 SGEIVEQLVHASRL-----SNIRNVVFMGMGEPLNNYAALVEAVRIMTGLP-FQVSPKRI 200
EI+ Q+ R ++ N+VFMGMGEPL N L A+ I++ +S ++I
Sbjct: 141 VSEILNQVYTVERRLRKKDESLNNLVFMGMGEPLLNIDNLSTALSIISNENGINISKRKI 200
Query: 201 TVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKN 260
T+ST G+V I K + + LA+SLH+ + + R QI+P + FPLE L L EYQK
Sbjct: 201 TISTSGVVPGIEKILLEKIPIELAISLHSAINEKRDQIIPINKNFPLEDLSAVLVEYQKQ 260
Query: 261 SQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSS 320
++++I EYI++D N E A+ L + F VVNLIP+N + V R S K+
Sbjct: 261 TKRRITFEYILIDNFNISEVDAYALSSFIHQFDHVVNLIPYNEVEGVEHTRPSM-KKIEK 319
Query: 321 FQKILRGSYNIRTTVRKQMGQDISGACGQL 350
F L+ + T+R++ G DI GACGQL
Sbjct: 320 FYSYLKNVRKVNVTLRQEKGSDIDGACGQL 349
>gi|374620265|ref|ZP_09692799.1| 23S rRNA m(2)A-2503 methyltransferase [gamma proteobacterium
HIMB55]
gi|374303492|gb|EHQ57676.1| 23S rRNA m(2)A-2503 methyltransferase [gamma proteobacterium
HIMB55]
Length = 378
Score = 202 bits (514), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 132/378 (34%), Positives = 208/378 (55%), Gaps = 37/378 (9%)
Query: 12 GIIRAEFE----KAGIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTST 67
G+ RA+ E + G K+ + K++ ++ +L L S +
Sbjct: 19 GMTRAQLEAFFGEIGEKKFRAQQVMKWMHHQGVRDFQAMTNLGKGLRDRLESCAEITPPQ 78
Query: 68 LHSVVDSSDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGC 127
+ S DS+D T K +K+ G VEAV++ P G R+TLC+SSQVGC
Sbjct: 79 IESQQDSADG-TRKWAIKVDGGALVEAVLI--------------PEGDRATLCVSSQVGC 123
Query: 128 KMGCNFCATGTMGFKSNLSSGEIVEQL---------VHASRLSNIRNVVFMGMGEPLNNY 178
+ C FC+TG GF+ +L++ EI+ Q+ A + + NVV MGMGEPL N+
Sbjct: 124 SLDCKFCSTGKQGFQRDLTAAEIIGQVWLAINSYDGWQAGKGRVVTNVVMMGMGEPLLNF 183
Query: 179 AALVEAVRIMT-GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQ 237
+V ++ +M L + +S +++T+ST G+V A+++ ++L ++LAVSLHAP +R +
Sbjct: 184 DNVVSSMDLMCDDLAYGLSKRKVTLSTSGVVPALDRL-AELSDVSLAVSLHAPNDAIRNK 242
Query: 238 IMPAARAFPLEKLMNALKEY---QKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQV 294
I+P R +P+ KL+++ + Y Q + ++ + IEY +L GVND+ +HAH+L LL+ +
Sbjct: 243 IVPINRRYPIAKLLDSARAYIDAQTDRKRVVTIEYTLLAGVNDQVEHAHELAALLKDYPC 302
Query: 295 VVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNL 354
+NLIPFN + S F S + VS F K+L + I TVR G DI ACGQLV ++
Sbjct: 303 KINLIPFNDFPN-SGFERPSGNAVSRFWKVLMEAGFI-VTVRTTRGDDIDAACGQLVGDV 360
Query: 355 PD--KISAKSTPPVTDIE 370
D K SA+ +IE
Sbjct: 361 NDRTKRSARYRAQYEEIE 378
>gi|374307506|ref|YP_005053937.1| radical SAM enzyme, Cfr family [Filifactor alocis ATCC 35896]
gi|291166481|gb|EFE28527.1| radical SAM enzyme, Cfr family [Filifactor alocis ATCC 35896]
Length = 345
Score = 202 bits (514), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 112/310 (36%), Positives = 185/310 (59%), Gaps = 19/310 (6%)
Query: 44 DEFPSLPSAAYSLLRSKFKPLTSTLHSVVDSSDDVTTKLLVKLQNGGFVEAVIMRYDSSL 103
DE +L L+ ++ + ++ ++S+ D T K L++L +G +E V+M Y +
Sbjct: 42 DEMYTLSKDFREKLKERYYICKTDIYHKLESNLDGTRKYLIELGDGNLIETVLMIYKN-- 99
Query: 104 GKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRL--S 161
GP ++C+S+QVGC+MGC FCA+ G NL+ GEI+ Q++ +
Sbjct: 100 ----------GP--SICLSTQVGCRMGCKFCASTVDGLVRNLTPGEIIGQMITVQKDLGE 147
Query: 162 NIRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPG 220
I N+V MG GEP +N+ LV+ ++++ Q+ + IT+ST G+V I +
Sbjct: 148 RIANIVIMGSGEPFDNFDNLVKFLKLVHEDYGLQIGYRHITISTCGLVPKIREMEKLGIP 207
Query: 221 LNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQ 280
+NLA+SLH Q+ R +IMP A+ + +E+L+ A K Y +++++ EY +++GV D +
Sbjct: 208 INLAISLHQVEQNKREEIMPIAKVYDIEELIEAGKHYANVTKRRVTYEYALIEGVTDSLE 267
Query: 281 HAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMG 340
AH+LG LL+ ++NLIP NPI S F+ + +V +FQK+L +Y+I TTVR+++G
Sbjct: 268 EAHKLGSLLKGSLSLINLIPINPIKEKS-FKKPNLKRVQAFQKVLL-NYHIITTVRRELG 325
Query: 341 QDISGACGQL 350
DI+GACGQL
Sbjct: 326 SDINGACGQL 335
>gi|302537211|ref|ZP_07289553.1| ribosomal RNA large subunit methyltransferase N [Streptomyces sp.
C]
gi|302446106|gb|EFL17922.1| ribosomal RNA large subunit methyltransferase N [Streptomyces sp.
C]
Length = 371
Score = 202 bits (514), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 120/324 (37%), Positives = 176/324 (54%), Gaps = 33/324 (10%)
Query: 45 EFPSLPSAAYSLLRSKFKPLTSTLHSVVDSSDDVTTKLLVKLQNGGFVEAVIMRYDSSLG 104
E+ +P+A+ L+ + P + + +D T K L KL +G VE+V+MRY
Sbjct: 64 EWTDIPAASREKLQQELLPELMNVVRHISCDNDTTRKTLWKLHDGTLVESVLMRYPD--- 120
Query: 105 KYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRL---- 160
R T+CISSQ GC M C FCATG G NLS+ EIV Q+V R
Sbjct: 121 -----------RVTMCISSQAGCGMNCPFCATGQAGLDRNLSTAEIVHQIVDGMRALRDG 169
Query: 161 ------SNIRNVVFMGMGEPLNNYAALVEAVRIMT-----GLPFQVSPKRITVSTVGIVH 209
+ + N+VFMGMGEPL NY +V A+R +T GL +S + ITVSTVG+V
Sbjct: 170 EVPGGPARLSNIVFMGMGEPLANYKRVVGAIRRLTDPEPDGL--GLSQRGITVSTVGLVP 227
Query: 210 AINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEY 269
A+ +F + LAVSLHAP ++R ++P + + ++++A EY + S ++I IEY
Sbjct: 228 AMLRFADEGFKCRLAVSLHAPDDELRDTLVPVNTRWKVREVLDAAWEYAEKSGRRISIEY 287
Query: 270 IMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSY 329
++ +ND+ LG+LL+ +V VNLIP NP + +D+ + + I R +
Sbjct: 288 ALIRDINDQAWRGDLLGRLLKGKRVHVNLIPLNPTPGSKWTASRPEDEKAFVEAIAR--H 345
Query: 330 NIRTTVRKQMGQDISGACGQLVVN 353
+ TVR GQ+I GACGQL +
Sbjct: 346 GVPVTVRDTRGQEIDGACGQLAAS 369
>gi|313203119|ref|YP_004041776.1| 23S rRNA m(2)a-2503 methyltransferase [Paludibacter propionicigenes
WB4]
gi|312442435|gb|ADQ78791.1| 23S rRNA m(2)A-2503 methyltransferase [Paludibacter propionicigenes
WB4]
Length = 350
Score = 202 bits (514), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 112/289 (38%), Positives = 169/289 (58%), Gaps = 22/289 (7%)
Query: 67 TLHSV----VDSSDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCIS 122
+LH V V +S D T K L + F+EA + P R+TLC+S
Sbjct: 65 SLHLVPSVSVQTSTDGTKKYLYPTRPQKFIEAAYI--------------PDKDRATLCVS 110
Query: 123 SQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSNIRNVVFMGMGEPLNNYAALV 182
+Q+GCKMGC FC TG GF+ NL++GEI+ Q+ + N+V+MGMGEPL+N A++
Sbjct: 111 TQIGCKMGCLFCMTGKQGFQGNLTTGEILNQMQSLPEFDKLTNIVYMGMGEPLDNVQAVM 170
Query: 183 EAVRIMTG-LPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPA 241
+++ +MT + SPKRITVST+GI+ A+ F + +LAVSLH+P D R IMP
Sbjct: 171 DSIEVMTSPWGYDWSPKRITVSTIGIIPAMMTFLENSKA-HLAVSLHSPFDDERRDIMPI 229
Query: 242 ARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPF 301
+P+ ++++ ++ ++ SQ+++ EYIM GVND +HA++L +LL + +NLI F
Sbjct: 230 QSVYPITEVVSNIRRWELGSQRRVSFEYIMFKGVNDTPRHANELVRLLNGIKCRINLIRF 289
Query: 302 NPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 350
+PI T+ +D V FQ L+ + T+R G+DI ACG L
Sbjct: 290 HPIPDTPLEGTALEDIV-DFQNRLKAK-GLTVTIRASRGEDIFAACGML 336
>gi|450011770|ref|ZP_21829307.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
mutans A19]
gi|450024106|ref|ZP_21831032.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
mutans U138]
gi|449189072|gb|EMB90750.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
mutans A19]
gi|449192436|gb|EMB93858.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
mutans U138]
Length = 361
Score = 202 bits (514), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 121/356 (33%), Positives = 192/356 (53%), Gaps = 34/356 (9%)
Query: 22 GIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKF--KPLTSTLHSVVDSSDDVT 79
G K+ IW ++ ++E +L +LL F PL +V S D T
Sbjct: 21 GEKKFRATQIWDWLYRKRVQSFEEMTNLSKDFIALLNENFLVNPLK---QRIVQESADGT 77
Query: 80 TKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTM 139
K L +L +G +E V+MR L ++C+++QVGC +GC FCA+G +
Sbjct: 78 VKYLFELPDGMLIETVLMRQHYGL--------------SVCVTTQVGCNIGCTFCASGLI 123
Query: 140 GFKSNLSSGEIVEQLVHASRL-------SNIRNVVFMGMGEPLNNYAALVEAVRIMT--- 189
+ +L+SGEI Q++ + I +VV MG+GEP +NY +++ +R +
Sbjct: 124 KKQRDLNSGEITAQIMLVQKYFDERGQGERISHVVVMGIGEPFDNYDNVLKFLRTINDDN 183
Query: 190 GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEK 249
GL + + ITVST G+ H I F ++ +NLAVSLHAP ++R IM R+FPLEK
Sbjct: 184 GLA--IGARHITVSTSGLAHKIRDFANERVQVNLAVSLHAPNNELRSSIMRINRSFPLEK 241
Query: 250 LMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVV--VNLIPFNPIGSV 307
L A++ Y + + +++ EYIML+GVND ++A +L L + + + VNLIP+NP+
Sbjct: 242 LFAAIEYYIETTNRRVTFEYIMLNGVNDNPENAQELADLTKKIRKLSYVNLIPYNPVTEH 301
Query: 308 SQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDKISAKST 363
Q+ S ++V +F +L+ + + VR++ G DI ACGQL N + K+T
Sbjct: 302 DQYSRSPKERVDAFYDVLKKN-GVNCVVRQEHGTDIDAACGQLRSNTMKRDREKAT 356
>gi|384432095|ref|YP_005641455.1| ribosomal RNA large subunit methyltransferase N [Thermus
thermophilus SG0.5JP17-16]
gi|333967563|gb|AEG34328.1| Ribosomal RNA large subunit methyltransferase N [Thermus
thermophilus SG0.5JP17-16]
Length = 355
Score = 202 bits (514), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 118/324 (36%), Positives = 178/324 (54%), Gaps = 23/324 (7%)
Query: 42 EWDEFPSLPSAAYSLLRSKFKPLTSTLHSVVDSSDDVTTKLLVKLQNGGFVEAVIMRYDS 101
++ E LP A L +++ +L S D + K L L +G EAV M Y++
Sbjct: 39 DFSEMTDLPKALREALAQEWRLSEFSLVQAFPSQDG-SVKYLFTLLDGKKTEAVYMPYEN 97
Query: 102 SLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLV---HAS 158
R T+C+S+ VGC GC FCATG +GF NL++ EI++QL+ +
Sbjct: 98 --------------RKTVCLSTMVGCPAGCTFCATGALGFGRNLTAAEILDQLLTIAYHQ 143
Query: 159 RLS--NIRNVVFMGMGEPLNNYAALVEAVRIMT-GLPFQVSPKRITVSTVGIVHAINKFH 215
LS IRNVV MGMGEPL N +++AVRIM +SP+R+T+STVGI I +
Sbjct: 144 GLSPREIRNVVLMGMGEPLLNLRNVLKAVRIMLHKKALALSPRRVTLSTVGIPKGIYRLA 203
Query: 216 SDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGV 275
+ G+ LA+SLHAP + R +I+P A +P+ ++M A++ Y +++++ EY +L GV
Sbjct: 204 EEDLGVRLALSLHAPDDETRRKIIPTAHRYPIAEIMEAVRHYYAKTKRRVTFEYTLLKGV 263
Query: 276 NDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTV 335
ND A L KLL+ VNLIPFNP T ++ +++ R + T++
Sbjct: 264 NDHLWQARLLAKLLKGLSAHVNLIPFNPWEGAPVAGTPKAGVLAFAEELKR--LGVPTSI 321
Query: 336 RKQMGQDISGACGQLVVNLPDKIS 359
R GQD+ ACGQL + +P ++
Sbjct: 322 RWSRGQDVGAACGQLALKVPRPLT 345
>gi|325280884|ref|YP_004253426.1| Ribosomal RNA large subunit methyltransferase N [Odoribacter
splanchnicus DSM 20712]
gi|324312693|gb|ADY33246.1| Ribosomal RNA large subunit methyltransferase N [Odoribacter
splanchnicus DSM 20712]
Length = 351
Score = 202 bits (514), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 119/327 (36%), Positives = 178/327 (54%), Gaps = 23/327 (7%)
Query: 31 IWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHSVVDSSDDVTTKLLVKLQNGG 90
IW+++ + ++ E +L A LL S+ S V ++ D T K +L +G
Sbjct: 35 IWQWIWQRGVTDFAEMSNLSKATRELL-SRHYFFDSLFPQQVQTASDGTEKTAWRLTDGE 93
Query: 91 FVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEI 150
VE+V++ PG + T+C+SSQVGC++GC FCATGT+GFK NL++GEI
Sbjct: 94 IVESVLI--------------PGNQKFTVCVSSQVGCQLGCKFCATGTLGFKRNLTAGEI 139
Query: 151 VEQLVHASRLSN-----IRNVVFMGMGEPLNNYAALVEAV-RIMTGLPFQVSPKRITVST 204
EQ+V A + + + N+VFMGMGEPL NY ++ A+ RI +SP RITVST
Sbjct: 140 FEQVVRAQQAAEAQGQPLSNIVFMGMGEPLLNYEQVLRAIERITAQDGLAMSPYRITVST 199
Query: 205 VGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQK 264
GI I + D NLA+SLHA + R +MP +A+PL ++ +LK + + + +
Sbjct: 200 AGIPEKIRQLADDGVRFNLALSLHAAKETTRTFLMPVNKAYPLSEIAGSLKYFVEKTGTR 259
Query: 265 IFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKI 324
EY++L +ND + A L F + +N+I +N + S F S D +F +
Sbjct: 260 PTFEYLLLKDINDSLEDAKALALYCRQFPIKINIIEYNNVEG-SGFHHSPDKNRDAFIRF 318
Query: 325 LRGSYNIRTTVRKQMGQDISGACGQLV 351
L G N+ VR+ G+DI ACGQL
Sbjct: 319 LEGC-NMVVNVRRSKGKDIDAACGQLA 344
>gi|152993941|ref|YP_001359662.1| ribosomal RNA large subunit methyltransferase N [Sulfurovum sp.
NBC37-1]
gi|205829910|sp|A6QCU6.1|RLMN_SULNB RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|151425802|dbj|BAF73305.1| conserved hypothetical protein [Sulfurovum sp. NBC37-1]
Length = 359
Score = 202 bits (514), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 122/330 (36%), Positives = 188/330 (56%), Gaps = 18/330 (5%)
Query: 31 IWKYVIENPNCEWDEFPSLPSAAYSLLRSKF--KPLTSTLHSVVDSSDDVTTKLLVKLQN 88
I+ ++ ++E +LP A L +++ PL + V S D + K L +L +
Sbjct: 29 IYDWIYHKYAASFEEMKNLPKAMREELDAEYTLAPLKTV---TVQDSMDGSRKYLFELHD 85
Query: 89 GGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSG 148
G VEAV++ +G + R T+CISSQVGCK+GC FC T GF NL++G
Sbjct: 86 GHTVEAVLLLMRDKEYHEDGSVKHQ-ERYTVCISSQVGCKVGCAFCLTAKGGFMRNLTAG 144
Query: 149 EIVEQLVHASRLSNIR-----NVVFMGMGEPLNNYAALVEAVRIMTGLP-FQVSPKRITV 202
EIVEQL + ++I N+VFMGMGEPL+N A+ ++V+I ++P R T+
Sbjct: 145 EIVEQLRMIKKDNDIAANRRVNIVFMGMGEPLDNLEAVAKSVKIFAEEEGMAIAPHRQTI 204
Query: 203 STVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQ 262
ST G+ I K G+NLA+SLHA ++R Q+MP +A+ +E ++ A+K + N +
Sbjct: 205 STSGLSSKIEKLGKMELGVNLAISLHAVDDELRQQLMPINKAYNIESIITAVKNFPVNDR 264
Query: 263 QKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQ 322
+++ EY+++ VND+ A +L LL+ + VNLI FNP G ++F+ S+ + FQ
Sbjct: 265 KRVMFEYLVIKDVNDDISAAKKLLSLLDGIKAKVNLIYFNPYGG-TEFKRPSEADMKKFQ 323
Query: 323 KIL--RGSYNIRTTVRKQMGQDISGACGQL 350
+ L RG + T+R+ G DIS ACGQL
Sbjct: 324 EYLTKRG---LHCTIRESKGLDISAACGQL 350
>gi|444920988|ref|ZP_21240826.1| Ribosomal RNA large subunit methyltransferase N [Wohlfahrtiimonas
chitiniclastica SH04]
gi|444507724|gb|ELV07898.1| Ribosomal RNA large subunit methyltransferase N [Wohlfahrtiimonas
chitiniclastica SH04]
Length = 371
Score = 202 bits (514), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 129/363 (35%), Positives = 197/363 (54%), Gaps = 38/363 (10%)
Query: 19 EKAGIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHSVV--DSSD 76
E+ G K + I K+V D+ + L+S+ L L V+ S+
Sbjct: 26 EEIGEKPYRAMQIMKWVYHKGASSIDDMTDISKKTREKLKSR---LVLELPKVLLDKPSN 82
Query: 77 DVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCAT 136
D T K L++L++G +E V + P R TLC+SSQVGC + C+FC+T
Sbjct: 83 DGTHKWLIQLESGNAIEMVFI--------------PEDDRGTLCVSSQVGCALECSFCST 128
Query: 137 GTMGFKSNLSSGEIVEQLVHASRL-------------SNIRNVVFMGMGEPLNNYAALVE 183
GF NLS+ EIV Q++ A RL + NVV MGMGEPL N+ + +
Sbjct: 129 ARQGFNRNLSTAEIVGQVMLAKRLLGEYEGDVQQSQNRRVTNVVLMGMGEPLLNFTNVTQ 188
Query: 184 AVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAA 242
A+ IM F +S +R+T+ST G+V A+ + ++ ++LA+SLHAP +R +++P
Sbjct: 189 AIDIMLNDYGFGLSKRRVTLSTSGVVPALYRLK-EVSDVSLAISLHAPYDTLRNELVPIN 247
Query: 243 RAFPLEKLMNALKEY--QKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIP 300
+ +PL +L+ A K Y + ++ +KI EY+ML VND E+ A L KL++ VNLIP
Sbjct: 248 KKYPLAELLEACKAYITESSAYRKITWEYVMLKDVNDREEDAFALAKLIKDIPGKVNLIP 307
Query: 301 FNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDKISA 360
FNP + S + SS ++++ F++IL+ + TTVRK G+DI ACGQL + D+
Sbjct: 308 FNPFPN-SGYECSSMNRINRFREILQ-RQGVVTTVRKTRGEDIDAACGQLAGRVNDRTKR 365
Query: 361 KST 363
T
Sbjct: 366 TKT 368
>gi|410663508|ref|YP_006915879.1| radical SAM enzyme, Cfr family protein [Simiduia agarivorans SA1 =
DSM 21679]
gi|409025865|gb|AFU98149.1| radical SAM enzyme, Cfr family protein [Simiduia agarivorans SA1 =
DSM 21679]
Length = 385
Score = 202 bits (514), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 125/360 (34%), Positives = 199/360 (55%), Gaps = 39/360 (10%)
Query: 14 IRAEFEKAGIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRS----KFKPLTSTLH 69
+ A FE G K+ + K++ + ++DE ++ + L+ +F + L
Sbjct: 24 MEAFFESIGEKRFRAQQVLKWIHQLGVVDFDEMTNISKDLRNKLKDVAEIRFPEVMKQLD 83
Query: 70 SVVDSSDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKM 129
SV D T K L+K++ G VE V + P G R TLC+SSQ+GC +
Sbjct: 84 SV-----DGTRKFLIKVEGGSAVETVFI--------------PDGERGTLCVSSQIGCSL 124
Query: 130 GCNFCATGTMGFKSNLSSGEIVEQLVHASRL---------SNIRNVVFMGMGEPLNNYAA 180
C+FCATG GF +L++ EI+ Q+ A++ + NVV MGMGEPL N+
Sbjct: 125 DCSFCATGKQGFNRDLTAAEIIAQVWIAAKSFGQLGVNGPRKVTNVVLMGMGEPLLNFDN 184
Query: 181 LVEAVRIMT-GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIM 239
+V+A+ +M + +S +R+T+ST G+V A+++ + LA+SLHAP +R +++
Sbjct: 185 VVDAMSLMMHDNCYGISKRRVTLSTSGVVPALDRL-GEYTDACLAISLHAPNDALRNELV 243
Query: 240 PAARAFPLEKLMNALKEYQK---NSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVV 296
P + +P+ L+++ K Y + ++ +KI IEY ++D VND +HAH+L +LL V +
Sbjct: 244 PINKKYPIAMLLDSAKRYIEQLPDTHRKITIEYTLIDHVNDRPEHAHELAELLRDVPVKI 303
Query: 297 NLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPD 356
NLIPFNP S S ++ S++ + FQ IL S + TTVR G DI ACGQL ++ D
Sbjct: 304 NLIPFNPF-SQSDYKRVSNNALRRFQTILIESGYV-TTVRTTRGDDIDAACGQLAGSVND 361
>gi|205829861|sp|A9BMV6.2|RLMN_DELAS RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
Length = 374
Score = 202 bits (514), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 137/372 (36%), Positives = 197/372 (52%), Gaps = 41/372 (11%)
Query: 9 FDGGIIRAEFEKAGIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKP---LT 65
FD + A E+ G K+ +++++ + ++D+ L + LR K K +T
Sbjct: 8 FDLDGLAAYCEQLGEKRFRATQLFRWIHQRGASDFDQMSDLAKS----LREKLKACAHIT 63
Query: 66 STLHSVVDSSDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQV 125
+ S D T K L + G VEAV + P R TLC+SSQ
Sbjct: 64 ALPVLTEHVSADGTVKWLFDVGGGDAVEAVFI--------------PEDDRGTLCVSSQA 109
Query: 126 GCKMGCNFCATGTMGFKSNLSSGEIVEQLVHAS-----RLSN-----IRNVVFMGMGEPL 175
GC +GC FC+TG GF NLS+GEI+ QL +A RL I NVV MGMGEPL
Sbjct: 110 GCAVGCRFCSTGHQGFSRNLSTGEILAQLWYAEHSLRKRLGTGGERVISNVVMMGMGEPL 169
Query: 176 NNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDV 234
NY ALV A+R M + +S +R+TVST G+V I++ D + +AVSLHAP ++
Sbjct: 170 QNYTALVPALRAMLDDHGYGLSRRRVTVSTSGVVPMIDRLSQDC-AVAMAVSLHAPNDEL 228
Query: 235 RCQIMPAARAFPLEKLMNALKEYQKNSQQK-IFIEYIMLDGVNDEEQHAHQLGKLLET-- 291
R ++P R +P+ +L++A + Y + + + I EY MLDGVND+ +HA QL +L+
Sbjct: 229 RDPLVPLNRKYPIHELLDACERYLEFAPRDFITFEYCMLDGVNDQPEHARQLIELVRARG 288
Query: 292 ---FQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACG 348
NLIPFNP + R+ + +V+ F +L + I TTVRK G DI ACG
Sbjct: 289 DGRSWCKFNLIPFNPFPASGLLRSPA-ARVTEFASLLSNA-GIVTTVRKTRGDDIDAACG 346
Query: 349 QLVVNLPDKISA 360
QL ++ D+ A
Sbjct: 347 QLAGDVKDRTRA 358
>gi|189426654|ref|YP_001953831.1| ribosomal RNA large subunit methyltransferase N [Geobacter lovleyi
SZ]
gi|189422913|gb|ACD97311.1| radical SAM enzyme, Cfr family [Geobacter lovleyi SZ]
Length = 351
Score = 202 bits (514), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 130/353 (36%), Positives = 194/353 (54%), Gaps = 33/353 (9%)
Query: 18 FEKAGIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYS-LLR----SKFKPLTSTLHSVV 72
+ G +++ I+K++ ++ +DE ++ A + L+R S+ +P T V
Sbjct: 21 LQGQGKERYRATQIFKWLYQHDVSSFDEMTNVSKALRAELVRTACISRLEPET------V 74
Query: 73 DSSDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCN 132
+ D T K L L++G VE+VI+ P R+TLCISSQ GC M C
Sbjct: 75 EVGSDGTRKYLFMLEDGNAVESVII--------------PDEDRNTLCISSQAGCAMQCA 120
Query: 133 FCATGTMGFKSNLSSGEIVEQLVHASRLSNIRNVVFMGMGEPLNNYAALVEAVRIMT--- 189
FC TGT NL++ EIV Q++ R +RN+V MGMGEPL+N ++ A++IM
Sbjct: 121 FCLTGTFSLTRNLTTAEIVNQILAVQRDVEVRNIVMMGMGEPLHNLDNVIPALQIMAEDN 180
Query: 190 GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEK 249
GL Q+S +R+TVST G+V + + ++ +NLAVSL+A ++R +IMP +A+P+
Sbjct: 181 GL--QLSSRRVTVSTCGLVPELERLGREV-TVNLAVSLNATTDELRDRIMPVNKAYPIAT 237
Query: 250 LMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQ 309
L+ ALK Y ++KI IEY++L G+ND + A +L +LL +NLIPFNP +
Sbjct: 238 LLAALKNYPLPGRRKITIEYVLLGGLNDTPEDAKRLVRLLSDIPCKINLIPFNP-HEGAD 296
Query: 310 FRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDKISAKS 362
FR S + +F K L + R G DIS ACGQL L K S +S
Sbjct: 297 FRPPSRAALDAFHKYLLDRH-FTVITRDSRGSDISAACGQLKGKLDRKPSQES 348
>gi|421611209|ref|ZP_16052360.1| radical SAM domain protein [Rhodopirellula baltica SH28]
gi|408498023|gb|EKK02531.1| radical SAM domain protein [Rhodopirellula baltica SH28]
Length = 379
Score = 202 bits (514), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 115/309 (37%), Positives = 173/309 (55%), Gaps = 22/309 (7%)
Query: 68 LHSVVDSSDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGC 127
L+ +DS D TKLL + ++G +E+VI+R + R+TLC+SSQ+GC
Sbjct: 64 LYQRMDSEIDGATKLLFETESGMLIESVILRIATG-------------RTTLCVSSQIGC 110
Query: 128 KMGCNFCATGTMGFKSNLSSGEIVEQLVHASRL-----SNIRNVVFMGMGEPLNNYAALV 182
C+FCATG MG NL++ EI++Q+V A ++ + N+VFMGMGEPL+N +
Sbjct: 111 AAACDFCATGKMGIAKNLATEEILDQVVQAGQILRGEDRRLSNIVFMGMGEPLHNEVNVT 170
Query: 183 EAVRIMTGLP-FQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPA 241
EA+ ++T F SP + VSTVG+ + + P LNLA+SLH+ Q R +I+P
Sbjct: 171 EAIELLTASDHFARSPSTVLVSTVGVPAGMLRLAKRFPNLNLALSLHSADQTTREKIIPL 230
Query: 242 ARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPF 301
+ L +L + + E Q ++ IEY+ML VND + A++L + +V VNLIP+
Sbjct: 231 GKKASLAQLHDTIHEIQTIQDREFMIEYLMLRDVNDSAKDANRLIDWIGDLRVHVNLIPY 290
Query: 302 NPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLV--VNLPDKIS 359
N I + S + SF IL+ S ++TTVR +G DI ACGQL+ N +
Sbjct: 291 NTIEASPHLHASPRPVIESFADILKAS-GLKTTVRYSLGNDIEAACGQLIRQENRQRAMQ 349
Query: 360 AKSTPPVTD 368
A+ T +D
Sbjct: 350 ARRTESESD 358
>gi|350571836|ref|ZP_08940152.1| cfr family radical SAM enzyme [Neisseria wadsworthii 9715]
gi|349791021|gb|EGZ44914.1| cfr family radical SAM enzyme [Neisseria wadsworthii 9715]
Length = 362
Score = 202 bits (514), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 130/359 (36%), Positives = 196/359 (54%), Gaps = 37/359 (10%)
Query: 18 FEKAGIKQHFIPL---------IWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTL 68
++ +G+ QHF + + +++ + ++DE L + + L+ K + L
Sbjct: 8 YDLSGLTQHFAEMGEKPFRAKQVMRWMHQAGASDFDEMTDLAKSLRAKLQDKAEVGVPAL 67
Query: 69 HSVVDSSDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCK 128
+ +S D T K L+ + G VE V + P R TLCISSQVGC
Sbjct: 68 MAAQESRDG-TRKWLLDVGTGNGVETVFI--------------PEAERGTLCISSQVGCA 112
Query: 129 MGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN--------IRNVVFMGMGEPLNNYAA 180
+ C FC+TG GF NLS+ EI+ QL A++ I NVV MGMGEPL N+
Sbjct: 113 LECTFCSTGRQGFNRNLSAAEIIGQLWWANKAMGVTPKNERVISNVVMMGMGEPLANFDN 172
Query: 181 LVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIM 239
+V A+ IM + +S +R+TVST G+V +++ +P + LAVSLHA VR +I+
Sbjct: 173 VVTALSIMLDDHGYGLSRRRVTVSTSGMVPQMDRLKEAMP-VALAVSLHASNDAVRDEIV 231
Query: 240 PAARAFPLEKLMNALKEYQ-KNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNL 298
P + +PL++LM A + Y K + + EY+MLDG+ND+ QHA +L +L++ NL
Sbjct: 232 PLNKKYPLKELMAACQRYLVKAPRDFVTFEYVMLDGINDKPQHAKELIELVKDVPCKFNL 291
Query: 299 IPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDK 357
IPFNP + S + SS+D + F++IL+ + + TVRK G DI ACGQL + DK
Sbjct: 292 IPFNPFPN-SGYDRSSNDAIRVFKEILQEAGFV-VTVRKTRGDDIDAACGQLAGQVQDK 348
>gi|407893166|ref|ZP_11152196.1| hypothetical protein Dmas2_03745 [Diplorickettsia massiliensis 20B]
Length = 315
Score = 202 bits (514), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 116/299 (38%), Positives = 175/299 (58%), Gaps = 28/299 (9%)
Query: 75 SDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFC 134
S D T K L++L++G VE V + P R TLC+SSQVGC + C+FC
Sbjct: 29 SADGTRKWLLRLEDGNCVETVFI--------------PERNRGTLCVSSQVGCALNCSFC 74
Query: 135 ATGTMGFKSNLSSGEIVEQLVHASRL---------SNIRNVVFMGMGEPLNNYAALVEAV 185
+TG GF NL EI+ Q+ A S + NVV MGMGEPL N+ A+V A+
Sbjct: 75 STGKQGFSRNLRIDEIIAQVWIAVHFVSKHIEFFSSRVTNVVMMGMGEPLLNFEAVVPAM 134
Query: 186 RIMTG-LPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARA 244
+M + S +R+T+ST GIV + K S + + LA+SLHAP ++R +++P +
Sbjct: 135 NLMMDDFAYGFSKRRVTLSTSGIVPMLKKL-SQVSDVALAISLHAPNDELRNELVPINKK 193
Query: 245 FPLEKLMNALKEY-QKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNP 303
+PL +L+ A + Y ++S+++I +EY++LDG+ND+ HA QL ++L+ V VNLIPFNP
Sbjct: 194 YPLRELLEACRHYFSQDSRRRITMEYVLLDGINDQLHHAQQLIQILQGISVKVNLIPFNP 253
Query: 304 IGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDKISAKS 362
+ +R S ++ F+ L + + T VRK GQDI ACGQLV + +++ +S
Sbjct: 254 FPRTT-YRRSPQHQIERFRDYLLKA-GLNTIVRKTRGQDIDAACGQLVGRVKQELAEQS 310
>gi|345863302|ref|ZP_08815514.1| ribosomal RNA large subunit methyltransferase N [endosymbiont of
Tevnia jerichonana (vent Tica)]
gi|345125763|gb|EGW55631.1| ribosomal RNA large subunit methyltransferase N [endosymbiont of
Tevnia jerichonana (vent Tica)]
Length = 365
Score = 202 bits (514), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 119/285 (41%), Positives = 174/285 (61%), Gaps = 21/285 (7%)
Query: 77 DVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCAT 136
D T K +++L +G +E V + P G RST+C+SSQVGC + C+FC+T
Sbjct: 79 DGTRKWVLQLDDGQRIETVYI--------------PDGERSTICVSSQVGCALNCSFCST 124
Query: 137 GTMGFKSNLSSGEIVEQLVHASRLSN--IRNVVFMGMGEPLNNYAALVEAVRIMT-GLPF 193
GF NLS EI+ Q+ ASR N+V MGMGEPL N+ A+V A+ IM +
Sbjct: 125 ARQGFNRNLSVAEIIGQVWVASRELGHPPTNIVLMGMGEPLANFDAVVTAMDIMQDDSAY 184
Query: 194 QVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNA 253
+S R+T+ST GIV A+ + ++ ++LAVSLHAP ++R Q++P + +PLE+L+ A
Sbjct: 185 MLSKYRVTISTSGIVPALRQLR-EVSDVSLAVSLHAPTNELRDQLVPINQKYPLEELIPA 243
Query: 254 LKEYQK-NSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRT 312
+++ K + ++KI EY+MLDG+ND QHA L +LLE +NLIPFNP S ++T
Sbjct: 244 CRDFIKGDKRRKITWEYVMLDGINDSIQHAKALIRLLEGTPSKLNLIPFNPFPGTS-YKT 302
Query: 313 SSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDK 357
S ++V F++ L + I T RK G+DI ACGQLV + D+
Sbjct: 303 SPPERVEVFRQRLMKAGIISIT-RKTRGEDIDAACGQLVGRVKDR 346
>gi|345877760|ref|ZP_08829498.1| hypothetical protein Rifp1Sym_be00130 [endosymbiont of Riftia
pachyptila (vent Ph05)]
gi|344225211|gb|EGV51576.1| hypothetical protein Rifp1Sym_be00130 [endosymbiont of Riftia
pachyptila (vent Ph05)]
Length = 379
Score = 202 bits (514), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 119/285 (41%), Positives = 174/285 (61%), Gaps = 21/285 (7%)
Query: 77 DVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCAT 136
D T K +++L +G +E V + P G RST+C+SSQVGC + C+FC+T
Sbjct: 93 DGTRKWVLQLDDGQRIETVYI--------------PDGERSTICVSSQVGCALNCSFCST 138
Query: 137 GTMGFKSNLSSGEIVEQLVHASRLSN--IRNVVFMGMGEPLNNYAALVEAVRIMT-GLPF 193
GF NLS EI+ Q+ ASR N+V MGMGEPL N+ A+V A+ IM +
Sbjct: 139 ARQGFNRNLSVAEIIGQVWVASRELGHPPTNIVLMGMGEPLANFDAVVTAMDIMQDDSAY 198
Query: 194 QVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNA 253
+S R+T+ST GIV A+ + ++ ++LAVSLHAP ++R Q++P + +PLE+L+ A
Sbjct: 199 MLSKYRVTISTSGIVPALRQLR-EVSDVSLAVSLHAPTNELRDQLVPINQKYPLEELIPA 257
Query: 254 LKEYQK-NSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRT 312
+++ K + ++KI EY+MLDG+ND QHA L +LLE +NLIPFNP S ++T
Sbjct: 258 CRDFIKGDKRRKITWEYVMLDGINDSIQHAKALIRLLEGTPSKLNLIPFNPFPGTS-YKT 316
Query: 313 SSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDK 357
S ++V F++ L + I T RK G+DI ACGQLV + D+
Sbjct: 317 SPPERVEVFRQRLMKAGIISIT-RKTRGEDIDAACGQLVGRVKDR 360
>gi|254480238|ref|ZP_05093486.1| radical SAM enzyme, Cfr family [marine gamma proteobacterium
HTCC2148]
gi|214039800|gb|EEB80459.1| radical SAM enzyme, Cfr family [marine gamma proteobacterium
HTCC2148]
Length = 391
Score = 202 bits (514), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 125/362 (34%), Positives = 203/362 (56%), Gaps = 46/362 (12%)
Query: 21 AGIKQHFIPL---------IWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHSV 71
A ++Q+F+ L + K++ + + DE +L +LR K K +
Sbjct: 27 AAMEQYFLELGEKKFRAQQVLKWIHHHGVTDIDEMSNLGK----VLREKLKSVAEIKPPE 82
Query: 72 VDS---SDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCK 128
+ S S+D T K ++++ GG VEAV++ P G R+TLC+SSQVGC
Sbjct: 83 IVSQHDSNDGTRKWAIRVEGGGLVEAVLI--------------PDGKRATLCVSSQVGCS 128
Query: 129 MGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN---------IRNVVFMGMGEPLNNYA 179
+ C+FC+TG GF+ +LS+ EI+ Q+ A + + + NVV MGMGEPL N+
Sbjct: 129 LDCSFCSTGKQGFQRDLSAAEIIGQVWLAIKSYDAFQSAKGRIVTNVVMMGMGEPLLNFD 188
Query: 180 ALVEAVRI-MTGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQI 238
+V A+ + M + +S +R+T+ST G+V A++K + + ++LAVSLHAP +R ++
Sbjct: 189 NVVAAMDLMMEDNAYGISKRRVTLSTSGVVPALDKL-AKVSEVSLAVSLHAPNDALRSEL 247
Query: 239 MPAARAFPLEKLMNALKEY---QKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVV 295
+P R +P+ L+ + + Y Q + ++ + IEY ++ GVND+ +HA +L +LL+ +
Sbjct: 248 VPINRKYPIAVLLESARNYIDAQSDKKRVVTIEYTLIAGVNDQREHAQELAQLLKGYPCK 307
Query: 296 VNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLP 355
+NLIPFN S +R S + VS F ++L + I TVR G DI ACGQLV +
Sbjct: 308 INLIPFNTFDQ-SDYRRPSGNAVSRFWQVLVDAGYI-VTVRTTRGDDIDAACGQLVGQVV 365
Query: 356 DK 357
D+
Sbjct: 366 DR 367
>gi|118602407|ref|YP_903622.1| radical SAM protein [Candidatus Ruthia magnifica str. Cm
(Calyptogena magnifica)]
gi|205829871|sp|A1AW44.1|RLMN_RUTMC RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|118567346|gb|ABL02151.1| 23S rRNA m(2)A-2503 methyltransferase [Candidatus Ruthia magnifica
str. Cm (Calyptogena magnifica)]
Length = 356
Score = 202 bits (514), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 123/308 (39%), Positives = 178/308 (57%), Gaps = 14/308 (4%)
Query: 61 FKPLTSTLHSVVDSSDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPR---PGGPRS 117
F+ + + S+ D V L+++ F+ ++++ +L K N P R
Sbjct: 43 FEKMLNFSKSLRDELSKVVCVELLRVVKQNFILDGVIKWVLALDKNNHIEMIYIPEKNRG 102
Query: 118 TLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN-----IRNVVFMGMG 172
TLCISSQVGC + C FC+TG GF NL++ EI+ Q++ ASR N I NVVFMGMG
Sbjct: 103 TLCISSQVGCGLACTFCSTGMQGFNKNLTTAEIIAQVLIASRYLNSKTKRISNVVFMGMG 162
Query: 173 EPLNNYAALVEAVR-IMTGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPV 231
EPL N A+ A ++ L F +S +++T+ST G+V A+ + P ++LAVSLHA
Sbjct: 163 EPLLNEHAVYNACDLLLDDLAFGLSRRKVTISTSGVVPAMLRMSERTP-VSLAVSLHASD 221
Query: 232 QDVRCQIMPAARAFPLEKLMNALKEYQKNSQQK--IFIEYIMLDGVNDEEQHAHQLGKLL 289
+R +++P + + LE+L+ A K Y + QK I EY+ML GVND +HA++L KLL
Sbjct: 222 DHLRNELVPINQKYSLEELLKACKVYLQAGTQKRHILFEYVMLKGVNDSIEHANKLVKLL 281
Query: 290 ETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQ 349
+ +NLIPFN +Q++TSS + FQ IL IRT R+ G+DI GACGQ
Sbjct: 282 KGISAKINLIPFNSFEK-TQYQTSSAQTIEKFQNILYHQ-GIRTMTRRTRGEDIGGACGQ 339
Query: 350 LVVNLPDK 357
L + DK
Sbjct: 340 LAGKVLDK 347
>gi|187251578|ref|YP_001876060.1| radical SAM enzyme, Cfr family [Elusimicrobium minutum Pei191]
gi|186971738|gb|ACC98723.1| Radical SAM enzyme, Cfr family [Elusimicrobium minutum Pei191]
Length = 343
Score = 202 bits (514), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 127/351 (36%), Positives = 195/351 (55%), Gaps = 31/351 (8%)
Query: 14 IRAEFEKAGIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHSVVD 73
I+ ++ G + I + V +N +W++ +LP+ + L+ F L+ T +
Sbjct: 6 IKDFIKENGFPAYRIAQVKDAVYKNGITDWNKAVALPADLKNKLKDNFNILSFTAAKMQF 65
Query: 74 SSDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNF 133
S D T K L+KL++G +E V+MR G T+C+S+QVGC +GC+F
Sbjct: 66 SDKDRTAKALLKLEDGLKIETVLMRM--------------GDVWTVCVSTQVGCPVGCSF 111
Query: 134 CATGTMGFKSNLSSGEIVEQL------VHASRLSN-IRNVVFMGMGEPLNNYAALVEAVR 186
C+TG M FK +L+ EI +Q+ + +L+ I NVVFMGMGEPL NY V+AV+
Sbjct: 112 CSTGKMRFKRDLTDEEISDQVLFWLSYIKQEKLAQRINNVVFMGMGEPLFNYLNTVKAVK 171
Query: 187 -IMTGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAF 245
I + + I++ST G+ + DLP +NLA+SLH+ D R +I+P R F
Sbjct: 172 EISNPDRLGIGMRHISISTSGVADKFHNLAVDLPQVNLALSLHSADDDERNKIVPLNRKF 231
Query: 246 PLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLL----ETFQVVVNLIPF 301
LE L AL EY + +++FIEY +++GVND +H LGK + + + + VNLI
Sbjct: 232 NLETLQKALTEYIAMTGRQVFIEYTVVEGVNDRPEHIRLLGKWISGVKDNYLLHVNLIAC 291
Query: 302 NPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVV 352
N + + +T+S+ +V F K L+G + I T+RK +G DI ACGQL V
Sbjct: 292 N----MGKGKTTSEKQVKLFAKGLQGLH-ISVTIRKSLGNDILAACGQLAV 337
>gi|148263644|ref|YP_001230350.1| ribosomal RNA large subunit methyltransferase N [Geobacter
uraniireducens Rf4]
gi|205829769|sp|A5GEC2.1|RLMN_GEOUR RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|146397144|gb|ABQ25777.1| 23S rRNA m(2)A-2503 methyltransferase [Geobacter uraniireducens
Rf4]
Length = 343
Score = 202 bits (514), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 116/280 (41%), Positives = 163/280 (58%), Gaps = 18/280 (6%)
Query: 72 VDSSDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGC 131
V++S D T K L +L +G VE+V++ P R+TLCISSQVGC MGC
Sbjct: 71 VEASADGTKKYLFRLADGNAVESVLI--------------PDEDRTTLCISSQVGCAMGC 116
Query: 132 NFCATGTMGFKSNLSSGEIVEQLVHASRLSNIRNVVFMGMGEPLNNYAALVEAVRIMTGL 191
FC TGT NL++ EIV Q+ R +RN+VFMGMGEPL N +V A++I+T
Sbjct: 117 EFCLTGTFKLTRNLTTAEIVNQVCAVKRQEPVRNIVFMGMGEPLANLKNVVGALKILTDP 176
Query: 192 P-FQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKL 250
FQ S +++TVST G+V + + + + +NLAVSL+A +VR +IMP R +PL++L
Sbjct: 177 DGFQFSTRKVTVSTSGLVPEMAELGASVT-VNLAVSLNATTDEVRDRIMPINRRYPLKEL 235
Query: 251 MNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQF 310
+ A K + S++ I IEY+M+ GVND A +L +L+ VNLIPFN + F
Sbjct: 236 LAACKAFPLPSRRWITIEYVMIRGVNDSLDDAKRLVRLISNIPSKVNLIPFNEHDGCT-F 294
Query: 311 RTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 350
+ + D + F K L + + R G DIS ACGQL
Sbjct: 295 QAPTQDSIDKFHKFLLDKH-VTVITRSSRGSDISAACGQL 333
>gi|282890654|ref|ZP_06299177.1| hypothetical protein pah_c022o278 [Parachlamydia acanthamoebae str.
Hall's coccus]
gi|338175218|ref|YP_004652028.1| ribosomal RNA large subunit methyltransferase N 2 [Parachlamydia
acanthamoebae UV-7]
gi|281499651|gb|EFB41947.1| hypothetical protein pah_c022o278 [Parachlamydia acanthamoebae str.
Hall's coccus]
gi|336479576|emb|CCB86174.1| ribosomal RNA large subunit methyltransferase N 2 [Parachlamydia
acanthamoebae UV-7]
Length = 350
Score = 202 bits (514), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 117/323 (36%), Positives = 181/323 (56%), Gaps = 23/323 (7%)
Query: 42 EWDEFPSLPSAAYSLLRSKFKPLTSTLHSVVDSSDDVTTKLLVKLQNGGFVEAVIMRYDS 101
+W+E ++ + LL+S+ L V S+D T K L +L++ VE+V++
Sbjct: 40 DWNEMTNISTDLKKLLQSQISLSHLQLVHVKPSADLETYKFLWRLKDNKLVESVLI---- 95
Query: 102 SLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLS 161
G R T+C+SSQVGC C FCA+G GF NL EIVEQ+ ++
Sbjct: 96 ----------CSGDRRTVCVSSQVGCPAKCAFCASGKQGFFRNLRPHEIVEQVFLINQWL 145
Query: 162 NIRN-----VVFMGMGEPLNNYAALVEAVRIMTGLPF-QVSPKRITVSTVGIVHAINKFH 215
+N VV+MGMGEPL NY +++++R+++ +S +RITVSTVGIV I +
Sbjct: 146 KDKNERVSHVVYMGMGEPLKNYDPVIKSIRLLSNPELLNLSQRRITVSTVGIVEGIKRLS 205
Query: 216 SDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGV 275
+ ++L +SLHAP Q +R +I+P AR +PL+ +M A+ EY K +++ I EY ++ G+
Sbjct: 206 REELKVSLVLSLHAPNQHIRQKIIPYARKYPLDAIMEAMDEYAKLTKRDITFEYTLIAGI 265
Query: 276 NDEEQHAHQLGKLLE-TFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTT 334
ND HA +L LL Q VNLIP+NP+ + + + + F+ +L G+ + T
Sbjct: 266 NDHPDHAFELTHLLHGKSQFTVNLIPYNPVPGL-RLKRPEKKAIKQFRAVLFGA-KVVNT 323
Query: 335 VRKQMGQDISGACGQLVVNLPDK 357
R G DI+ ACGQL + +K
Sbjct: 324 CRYTKGDDIAAACGQLALQELEK 346
>gi|425032879|ref|ZP_18437888.1| 23S rRNA methyltransferase [Enterococcus faecium 515]
gi|403011707|gb|EJY24998.1| 23S rRNA methyltransferase [Enterococcus faecium 515]
Length = 355
Score = 202 bits (513), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 121/356 (33%), Positives = 187/356 (52%), Gaps = 30/356 (8%)
Query: 18 FEKAGIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKF--KPLTSTLHSVVDSS 75
F + G K+ +W+++ + + E +L L F PL VV +
Sbjct: 18 FIENGEKKFRAAQVWEWLYQKRVSNFTEMTNLSKQLIEKLSEHFIINPLKQM---VVQEA 74
Query: 76 DDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCA 135
D T K L +L + +E V+MR + L ++C+++QVGC +GC FCA
Sbjct: 75 SDGTVKYLFELPDKNMIETVLMRQEYGL--------------SVCVTTQVGCNIGCTFCA 120
Query: 136 TGTMGFKSNLSSGEIVEQLVHASRLSNIRN-------VVFMGMGEPLNNYAALVEAVRIM 188
+G + +L++GEIV Q++ + RN VV MG+GEP +NY +++ + I+
Sbjct: 121 SGLLKKNRDLTAGEIVAQIMMVQHYFDERNLGERVSHVVVMGIGEPFDNYDNVMDFLHII 180
Query: 189 TGLP-FQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPL 247
+ + ITVST G+ H I +F ++ +NLA+SLHAP +VR IM R+FP+
Sbjct: 181 NDAKGLAIGARHITVSTSGLAHKIKEFANNGLQVNLAISLHAPNNEVRTSIMRINRSFPI 240
Query: 248 EKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVV--NLIPFNPIG 305
EKLM A+ EY + + ++I EYIML+ VND +HA QL LL+ + + NLIP+NP+
Sbjct: 241 EKLMEAVDEYLEKTNRRITFEYIMLNQVNDRPEHAQQLADLLKDKKKLAYDNLIPYNPVS 300
Query: 306 SVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDKISAK 361
Q+ S V F +L+ + + +RK+ G DI ACGQL K AK
Sbjct: 301 EHDQYSRSPKADVLRFYDVLKKN-GVNCVIRKEHGTDIDAACGQLRSKQMKKTVAK 355
>gi|397689423|ref|YP_006526677.1| Ribosomal RNA large subunit methyltransferase N [Melioribacter
roseus P3M]
gi|395810915|gb|AFN73664.1| Ribosomal RNA large subunit methyltransferase N [Melioribacter
roseus P3M]
Length = 353
Score = 202 bits (513), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 127/353 (35%), Positives = 185/353 (52%), Gaps = 33/353 (9%)
Query: 14 IRAEFEKAGIKQH----FIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLH 69
+R+ FE G ++ I+ +++ +P +E + P L + + +T TL
Sbjct: 17 LRSYFESIGEAKYRGDQLFNWIYNHIVFDP----EELSNFPKNLRIRLTEETELITLTLQ 72
Query: 70 SVVDSSDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKM 129
S T K L ++G +E+V++ P G R+TLC+S+QVGC +
Sbjct: 73 DKQHSVSTGTVKYLFSTKDGHKIESVLI--------------PDGDRNTLCLSTQVGCPL 118
Query: 130 GCNFCATGTMGFKSNLSSGEIVEQ-LVHASRL--SNIRNVVFMGMGEPLNNYAALVEAVR 186
C FCATG MGFK NLS+GEI +Q L+ AS I N+VFMGMGEPL NY + A+
Sbjct: 119 DCKFCATGLMGFKRNLSAGEITDQYLLIASDYGKEKITNIVFMGMGEPLTNYRNTLTAIE 178
Query: 187 IMTG-LPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAF 245
I T L +S RITVST GI I + + LA SLH+ D+R +IMP + +
Sbjct: 179 IFTHELSKSLSRNRITVSTAGIPDRIRELADSGLRVKLAFSLHSAFDDIRNKIMPINKKY 238
Query: 246 PLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPF---- 301
PLEK + ALK Y ++ +I EY ML G+ND ++ +L K+ +N+IPF
Sbjct: 239 PLEKNIEALKYYAAKTKTRITFEYTMLRGINDRDEDIKELAKICSRIPSKINIIPFNSIE 298
Query: 302 --NPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVV 352
NP G ++ + +++ +F LR NI +R G DI+ ACGQL V
Sbjct: 299 HMNPGGISAELEPTPYEEIINFADKLR-QRNISVFIRDTQGDDIAAACGQLAV 350
>gi|22536637|ref|NP_687488.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
agalactiae 2603V/R]
gi|76797765|ref|ZP_00780032.1| radical SAM enzyme, Cfr family [Streptococcus agalactiae 18RS21]
gi|77405571|ref|ZP_00782661.1| radical SAM enzyme, Cfr family [Streptococcus agalactiae H36B]
gi|81588624|sp|Q8E1A3.1|RLMN_STRA5 RecName: Full=Probable dual-specificity RNA methyltransferase RlmN;
AltName: Full=23S rRNA
(adenine(2503)-C(2))-methyltransferase; AltName:
Full=23S rRNA m2A2503 methyltransferase; AltName:
Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=tRNA (adenine(37)-C(2))-methyltransferase;
AltName: Full=tRNA m2A37 methyltransferase
gi|22533475|gb|AAM99360.1|AE014212_19 conserved hypothetical protein TIGR00048 [Streptococcus agalactiae
2603V/R]
gi|76586913|gb|EAO63404.1| radical SAM enzyme, Cfr family [Streptococcus agalactiae 18RS21]
gi|77175793|gb|EAO78572.1| radical SAM enzyme, Cfr family [Streptococcus agalactiae H36B]
Length = 368
Score = 202 bits (513), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 118/346 (34%), Positives = 191/346 (55%), Gaps = 34/346 (9%)
Query: 22 GIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKF--KPLTSTLHSVVDSSDDVT 79
G K+ IW ++ + +DE ++ +LL F PL +V S D T
Sbjct: 30 GEKKFRASQIWDWLYKKRVQSFDEMTNISKDFIALLNENFVVNPLK---QRIVQESADGT 86
Query: 80 TKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTM 139
K L +L +G +E V+MR L ++C+++QVGC +GC FCA+G +
Sbjct: 87 VKYLFELPDGMLIETVLMRQHYGL--------------SVCVTTQVGCNIGCTFCASGLI 132
Query: 140 GFKSNLSSGEIVEQLVHASRLSNIR-------NVVFMGMGEPLNNYAALVEAVRIMT--- 189
+ +L++GEI Q++ + + R ++V MG+GEP +NY +++ +R +
Sbjct: 133 KKQRDLNNGEITAQIMLVQKYFDERGQGERVSHIVVMGIGEPFDNYTNVLKFLRTVNDDN 192
Query: 190 GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEK 249
GL + + ITVST G+ H I +F ++ +NLAVSLHAP D+R IM R+FPLEK
Sbjct: 193 GLA--IGARHITVSTSGLAHKIREFANEGVQVNLAVSLHAPNNDLRSSIMRINRSFPLEK 250
Query: 250 LMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVV--VNLIPFNPIGSV 307
L A++ Y + + +++ EYIML+GVND ++A +L L + + + VNLIP+NP+
Sbjct: 251 LFAAIEYYIETTNRRVTFEYIMLNGVNDTPENAQELADLTKKIRKLSYVNLIPYNPVSEH 310
Query: 308 SQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVN 353
Q+ S ++V +F +L+ + + VR++ G DI ACGQL N
Sbjct: 311 DQYSRSPKERVEAFYDVLKKN-GVNCVVRQEHGTDIDAACGQLRSN 355
>gi|294783089|ref|ZP_06748413.1| radical SAM enzyme, Cfr family [Fusobacterium sp. 1_1_41FAA]
gi|294479967|gb|EFG27744.1| radical SAM enzyme, Cfr family [Fusobacterium sp. 1_1_41FAA]
Length = 358
Score = 202 bits (513), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 125/330 (37%), Positives = 180/330 (54%), Gaps = 23/330 (6%)
Query: 30 LIW--KYVIENPNCEWDEFPSLPSAAYSLLRSK-FKPLTSTLHSVVDSSDDVTTKLLVKL 86
IW K +I N +D+ +L +L+ + P + L V S D T K L +L
Sbjct: 34 FIWLHKKIIRN----FDDMTNLSLKDREILKENAYIPFFNLLKHQV-SKLDKTEKFLFEL 88
Query: 87 QNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLS 146
++ G +E V++R+ S K R+TLC+SSQVGC + C+FCATG G+ NLS
Sbjct: 89 EDKGTIETVLLRHRDSKNK--------EIRNTLCVSSQVGCPVKCSFCATGQGGYMRNLS 140
Query: 147 SGEIVEQLVHASRL-----SNIRNVVFMGMGEPLNNYAALVEAVRIMTGLP-FQVSPKRI 200
EI+ Q+ R ++ N+VFMGMGEPL N L A+ I++ +S ++I
Sbjct: 141 VSEILNQVYTVERRLRKKDESLNNLVFMGMGEPLLNIDNLSTALSIISNENGINISKRKI 200
Query: 201 TVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKN 260
T+ST GIV I K + + LAVSLH+ + + R QI+P + FPLE L L EYQK
Sbjct: 201 TISTSGIVSGIEKILLEKIPIELAVSLHSAINEKRDQIIPINKNFPLEDLSAVLVEYQKQ 260
Query: 261 SQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSS 320
++++I EYI++D N E A+ L + F VVNLIP+N + V R S K+
Sbjct: 261 TKRRITFEYILIDNFNISEVDANALADFIHQFDHVVNLIPYNEVEGVEHKRPSM-KKIDR 319
Query: 321 FQKILRGSYNIRTTVRKQMGQDISGACGQL 350
F L+ + T+R++ G DI GACGQL
Sbjct: 320 FYNYLKNVRKVNVTLRQEKGSDIDGACGQL 349
>gi|404379277|ref|ZP_10984342.1| ribosomal RNA large subunit methyltransferase N [Simonsiella
muelleri ATCC 29453]
gi|404294703|gb|EJZ50198.1| ribosomal RNA large subunit methyltransferase N [Simonsiella
muelleri ATCC 29453]
Length = 364
Score = 202 bits (513), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 131/359 (36%), Positives = 194/359 (54%), Gaps = 28/359 (7%)
Query: 9 FDGGIIRAEFEKAGIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTL 68
FD + F + G K + +++ ++ +D+ L + + L + L
Sbjct: 9 FDLPTLTEHFAQMGEKPFRAKQVMRWIHQSGAENFDQMTDLAKSLRAKLNDNAQVGIPAL 68
Query: 69 HSVVDSSDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCK 128
+ +S D T K L+ + G VE V + P R TLCISSQVGC
Sbjct: 69 ITSQESKDG-TRKWLLDVGTGNGVETVFI--------------PETERGTLCISSQVGCA 113
Query: 129 MGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN--------IRNVVFMGMGEPLNNYAA 180
+ C FC+TG GF NLS+ EI+ QL A++ I NVV MGMGEPL NY
Sbjct: 114 LECTFCSTGRQGFNRNLSTAEIIGQLWWANKALGVTPKNERVISNVVMMGMGEPLANYDN 173
Query: 181 LVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIM 239
++ A+ IM + +S +R+TVST G+V +++ D+P + LAVSLHA VR +I+
Sbjct: 174 VINALSIMLDDHGYGLSRRRVTVSTSGMVPQMDRLKEDMP-VALAVSLHASNDQVRDKIV 232
Query: 240 PAARAFPLEKLMNALKEY-QKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNL 298
P + +PL++LM A Y K + I EY+MLDG+ND+ +HAH+L +L++ NL
Sbjct: 233 PLNKKYPLKELMAACNRYLMKAPRDFITFEYVMLDGINDKPEHAHELVQLVKDTPCKFNL 292
Query: 299 IPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDK 357
IPFNP + S + SS+ ++ F++IL + ++ TTVRK G DI ACGQL + DK
Sbjct: 293 IPFNPFPN-SGYERSSNKNINIFKEILMEA-DLVTTVRKTRGDDIDAACGQLAGQVQDK 349
>gi|290957076|ref|YP_003488258.1| hypothetical protein SCAB_25951 [Streptomyces scabiei 87.22]
gi|260646602|emb|CBG69699.1| conserved hypothetical protein [Streptomyces scabiei 87.22]
Length = 368
Score = 202 bits (513), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 120/325 (36%), Positives = 178/325 (54%), Gaps = 33/325 (10%)
Query: 44 DEFPSLPSAAYSLLRSKFKPLTSTLHSVVDSSDDVTTKLLVKLQNGGFVEAVIMRYDSSL 103
+++ +P+ A + LR P T+ + + D T K L +L +G VE+V+MRY
Sbjct: 60 EQWTDIPAGARAKLREALLPELMTVVRHLSTDQDTTRKTLWRLFDGTLVESVLMRYPD-- 117
Query: 104 GKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRL--- 160
R T+CISSQ GC M C FCATG G NLS+ EIV Q+V R
Sbjct: 118 ------------RVTMCISSQAGCGMNCPFCATGQAGLDRNLSTAEIVHQIVDGMRALRD 165
Query: 161 -------SNIRNVVFMGMGEPLNNYAALVEAVRIMT-----GLPFQVSPKRITVSTVGIV 208
+ + N+VFMGMGEPL NY +V A+R +T GL +S + ITVSTVG+V
Sbjct: 166 GEIPGGPARLSNIVFMGMGEPLANYNRVVGAIRRLTDPEPDGL--GLSQRGITVSTVGLV 223
Query: 209 HAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIE 268
AI++F + LA+SLHAP ++R ++P + + ++++A EY S +++ IE
Sbjct: 224 PAIHRFADEGFKCRLAISLHAPDDELRDTLVPVNTRWKVREVLDAGWEYTARSGRRLSIE 283
Query: 269 YIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGS 328
Y ++ +ND+ +LG+LL+ V VNLIP NP S++ S + +F + + G
Sbjct: 284 YALIRDINDQAWRGDRLGRLLKGKPVHVNLIPLNPTPG-SKWTASRPEDEKAFVEAIAG- 341
Query: 329 YNIRTTVRKQMGQDISGACGQLVVN 353
+ + TVR GQ+I GACGQL
Sbjct: 342 HGVPVTVRDTRGQEIDGACGQLAAT 366
>gi|229545365|ref|ZP_04434090.1| Fe-S-cluster redox enzyme [Enterococcus faecalis TX1322]
gi|307295833|ref|ZP_07575665.1| radical SAM enzyme, Cfr family [Enterococcus faecalis TX0411]
gi|422686726|ref|ZP_16744918.1| radical SAM enzyme, Cfr family [Enterococcus faecalis TX4000]
gi|229309472|gb|EEN75459.1| Fe-S-cluster redox enzyme [Enterococcus faecalis TX1322]
gi|306496164|gb|EFM65743.1| radical SAM enzyme, Cfr family [Enterococcus faecalis TX0411]
gi|315028571|gb|EFT40503.1| radical SAM enzyme, Cfr family [Enterococcus faecalis TX4000]
Length = 357
Score = 202 bits (513), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 119/345 (34%), Positives = 185/345 (53%), Gaps = 30/345 (8%)
Query: 18 FEKAGIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHSVVDSSDD 77
F G K+ +W+++ + E ++ + +LL F L +V + D
Sbjct: 18 FLAHGEKKFRATQVWEWLYTKRVASFSEMSNISKSLMTLLEENF-SLNPLKQVIVQEAQD 76
Query: 78 VTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATG 137
T K L +L + +E V+MR + L ++C+++QVGC +GC FCA+G
Sbjct: 77 GTVKYLFELPDKNMIETVLMRQEYGL--------------SVCVTTQVGCNIGCTFCASG 122
Query: 138 TMGFKSNLSSGEIVEQLVHASRLSNIR-------NVVFMGMGEPLNNYAALVEAVRIMT- 189
+ + +L++GEIV Q++ + R +VV MG+GEP +NY ++ +R +
Sbjct: 123 LLKKQRDLTAGEIVAQIMWVQHYFDERGLDERVSHVVVMGIGEPFDNYVNVMNFLRTIND 182
Query: 190 --GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPL 247
GL + + ITVST G+V I +F +NLA+SLHAP +VR IM R+FP+
Sbjct: 183 DKGLA--IGARHITVSTSGLVPKIREFADSGLQVNLAISLHAPNNEVRTLIMRINRSFPI 240
Query: 248 EKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVV--VNLIPFNPIG 305
EKLM A+ EY + + +++ EYIML VND +HA QL LL + + VNLIP+NP+
Sbjct: 241 EKLMAAIDEYIEKTNRRVTFEYIMLSQVNDRPEHAQQLADLLRNKKKLSYVNLIPYNPVS 300
Query: 306 SVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 350
Q+ SS + V F +L+ + I +RK+ G DI ACGQL
Sbjct: 301 EHDQYSRSSKEAVLKFYDVLKKN-GINCVIRKEHGTDIDAACGQL 344
>gi|260584540|ref|ZP_05852286.1| radical SAM enzyme, Cfr family [Granulicatella elegans ATCC 700633]
gi|260157563|gb|EEW92633.1| radical SAM enzyme, Cfr family [Granulicatella elegans ATCC 700633]
Length = 375
Score = 202 bits (513), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 119/348 (34%), Positives = 190/348 (54%), Gaps = 32/348 (9%)
Query: 16 AEFEKAGIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKFK-PLTSTLHSVVDS 74
A FE+ G K+ +W ++ ++E +L + L F P+ + +
Sbjct: 28 AWFEEHGEKKFRAGQLWDWLYRKRVTSFEEMTNLSKDLIAKLNETFTFPVLN--EKIKQQ 85
Query: 75 SDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFC 134
S D T K L +L +G +E V+M P+ G ++C+++QVGC +GC FC
Sbjct: 86 STDGTRKFLFELADGLLIETVLM------------PQEYGL--SICVTTQVGCNIGCTFC 131
Query: 135 ATGTMGFKSNLSSGEIVEQLVHASRL-------SNIRNVVFMGMGEPLNNYAALVEAVRI 187
A+G + + +L +GEIV Q++H R + ++V MG+GEP +NY +++ +++
Sbjct: 132 ASGIIAKQRDLVAGEIVAQVMHVQRTLDEVAPGDRVSHIVVMGIGEPFDNYDNVIKFLKV 191
Query: 188 M---TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARA 244
+ TGL + + ITVST G+ I F + +NLA+SLHAP D R +IM R
Sbjct: 192 VNSDTGLA--IGARHITVSTSGLAPKILDFAKEGLQVNLALSLHAPDNDTRSKIMRINRK 249
Query: 245 FPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVV--VNLIPFN 302
+P+E +M A+ EY + + +++ EYIMLD VND + A QL LL + + VNLIP+N
Sbjct: 250 YPIEVVMEAINEYIRTTNRRVTFEYIMLDHVNDSVEQAQQLADLLADKKRLSYVNLIPYN 309
Query: 303 PIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 350
+ Q+ SS D+V +F +L+ ++ I VRK+ G DI ACGQL
Sbjct: 310 KVREHDQYERSSKDRVVAFYDVLKKNH-INCVVRKEFGHDIEAACGQL 356
>gi|406831254|ref|ZP_11090848.1| radical SAM protein [Schlesneria paludicola DSM 18645]
Length = 359
Score = 202 bits (513), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 129/360 (35%), Positives = 196/360 (54%), Gaps = 32/360 (8%)
Query: 2 TYDYRSVF--DGGIIRAEFEKAGIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRS 59
T R V+ D G + A E G ++ I +++ + ++ +P+A + L +
Sbjct: 10 TTSKRRVYELDLGGLSAWCESQGFPKYRAEQIRRWIFGHRVDDFSAMHDIPAALRAALTA 69
Query: 60 KFK--PLTSTLHSVVDSSDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRS 117
+F P H V ++D T KLL++L +G +E V+MR R
Sbjct: 70 EFSLFPARVANHQV---ANDRTEKLLLELGDGQLIECVLMRETD--------------RR 112
Query: 118 TLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRL----SNIRNVVFMGMGE 173
T+CIS+QVGC MGC FCA+G +G K NL++GEI+EQ++ RL I NVV MG+GE
Sbjct: 113 TICISTQVGCAMGCVFCASGMLGLKRNLTTGEILEQILRLDRLLAKGEQITNVVVMGIGE 172
Query: 174 PLNNYAALVEAVRIMT---GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAP 230
PL N +LV A+ + GL + +RIT+STVG+ I + NLAVSLHAP
Sbjct: 173 PLANLKSLVPALDTLNEKGGL--GIGARRITISTVGLPEKIRELAKLGKQYNLAVSLHAP 230
Query: 231 VQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLE 290
++R +++P ++ ++ A EY + + +++ EY++L GVNDE HA QL K L+
Sbjct: 231 NDELRNRLVPVNDKIGIDAILAAADEYFEITGRRVTYEYVLLSGVNDEPFHARQLAKRLQ 290
Query: 291 TFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 350
+ VNLIP N + + +F + + F ++L S+ I TVRK+ G DI ACGQL
Sbjct: 291 SRIAHVNLIPMNGVTEL-EFVAPTAPRTDEFVQVLE-SFGIPATVRKRKGADIDAACGQL 348
>gi|365863763|ref|ZP_09403468.1| ribosomal RNA large subunit methyltransferase N [Streptomyces sp.
W007]
gi|364006802|gb|EHM27837.1| ribosomal RNA large subunit methyltransferase N [Streptomyces sp.
W007]
Length = 368
Score = 202 bits (513), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 119/324 (36%), Positives = 176/324 (54%), Gaps = 33/324 (10%)
Query: 45 EFPSLPSAAYSLLRSKFKPLTSTLHSVVDSSDDVTTKLLVKLQNGGFVEAVIMRYDSSLG 104
E+ ++P+ + L P ++ + DD T K L KL +G VE+V+MRY
Sbjct: 61 EWTNIPAGSREKLAEALFPDLMSVMRHISCDDDTTRKTLWKLHDGTLVESVLMRYPD--- 117
Query: 105 KYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRL---- 160
R T+CISSQ GC M C FCATG G NLS+ EIV Q+V R
Sbjct: 118 -----------RVTMCISSQAGCGMNCPFCATGQAGLDRNLSTAEIVHQIVDGMRALRDG 166
Query: 161 ------SNIRNVVFMGMGEPLNNYAALVEAVRIMT-----GLPFQVSPKRITVSTVGIVH 209
+ + N+VFMGMGEPL NY +V A+R +T GL +S + ITVSTVG+V
Sbjct: 167 EVPGGPARLSNIVFMGMGEPLANYNRVVGAIRRLTDPEPDGL--GLSQRGITVSTVGLVP 224
Query: 210 AINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEY 269
A+ +F + LAVSLHAP ++R ++P + + ++++A EY + S ++I IEY
Sbjct: 225 AMLRFADEGFKCRLAVSLHAPDDELRDTLVPVNTRWNVREVLDAAWEYAEKSGRRISIEY 284
Query: 270 IMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSY 329
++ +ND+ +LG+LL+ +V VNLIP NP + +D+ + + I ++
Sbjct: 285 ALIRDINDQAWRGDRLGRLLKGKRVHVNLIPLNPTPGSKWTASRPEDEKAFVEAI--AAH 342
Query: 330 NIRTTVRKQMGQDISGACGQLVVN 353
+ TVR GQ+I GACGQL +
Sbjct: 343 GVPVTVRDTRGQEIDGACGQLAAS 366
>gi|410031405|ref|ZP_11281235.1| ribosomal RNA large subunit methyltransferase N [Marinilabilia sp.
AK2]
Length = 353
Score = 202 bits (513), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 122/330 (36%), Positives = 177/330 (53%), Gaps = 34/330 (10%)
Query: 31 IWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHSVVD---SSDDVTTKLLVKLQ 87
+W ++N +D+ ++ +L++ F S H VD S D T K VKL
Sbjct: 38 LWNKSLKN----FDDMSNISKETREMLKANF----SINHVKVDLMQHSVDGTIKNAVKLY 89
Query: 88 NGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSS 147
+ VE+V++ P R T C+SSQVGC + CNFCAT + NL+
Sbjct: 90 DDKIVESVLI--------------PTEKRITACVSSQVGCSLDCNFCATARLKRMRNLNP 135
Query: 148 GEIVEQLVHASRLSN------IRNVVFMGMGEPLNNYAALVEAV-RIMTGLPFQVSPKRI 200
EI +Q+V + + N+VFMGMGEPL NY ++EA+ +I ++P+RI
Sbjct: 136 DEIYDQVVAIKEEAETYFNRPLTNIVFMGMGEPLLNYNNVIEAIDKITAPEGLGMAPRRI 195
Query: 201 TVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKN 260
T+STVGI I K D NLA+SLH+ + + R ++MP PLE L ALK + +
Sbjct: 196 TLSTVGIPKMIKKMADDEVKFNLAISLHSAINETRSRLMPINEVNPLEDLAEALKYWYQK 255
Query: 261 SQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSS 320
+++K+ EY++ DGVND+E+HA L K + VN+I +NPI +FR +S + V
Sbjct: 256 TKRKVTYEYVIWDGVNDDEKHAKALAKFCKIIPSKVNIIQYNPIDE-GEFRQASQEAVDM 314
Query: 321 FQKILRGSYNIRTTVRKQMGQDISGACGQL 350
+ +IL I VRK GQDI ACGQL
Sbjct: 315 YVRILE-EQGIIAKVRKSRGQDIDAACGQL 343
>gi|299821377|ref|ZP_07053265.1| cfr family radical SAM enzyme [Listeria grayi DSM 20601]
gi|299817042|gb|EFI84278.1| cfr family radical SAM enzyme [Listeria grayi DSM 20601]
Length = 367
Score = 202 bits (513), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 112/332 (33%), Positives = 186/332 (56%), Gaps = 30/332 (9%)
Query: 31 IWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHSVVDSSDDVTTKLLVKLQNGG 90
IW ++ + E ++P +LL F + + ++ S D TTK L KLQ+G
Sbjct: 31 IWDWLYRKRVRSFAEMTNVPKETLALLEESF-VMETLEKEIIQESKDGTTKYLFKLQDGN 89
Query: 91 FVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEI 150
+E V+M+ L ++C+++QVGC +GC FCA+G + +LS+GEI
Sbjct: 90 LIETVLMKQKYGL--------------SVCVTTQVGCNIGCTFCASGILKKSRDLSAGEI 135
Query: 151 VEQLVHA-----SRLSNIR--NVVFMGMGEPLNNYAALVEAVRIM---TGLPFQVSPKRI 200
VEQ+++ R S+ R ++V MG+GEP +NY L+ + ++ +GL + + I
Sbjct: 136 VEQIMNVQYYLDDRGSDERVSHIVVMGIGEPFDNYENLMNFLHVVNSDSGLA--IGARHI 193
Query: 201 TVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKN 260
TVST G+ I +F + +NLA+SLHAP ++R QIM R F +E LM A++ Y +
Sbjct: 194 TVSTSGLAPKIKEFADEDLQVNLAISLHAPNNELRTQIMRINRTFSIETLMEAIEYYIEK 253
Query: 261 SQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQ--VVVNLIPFNPIGSVSQFRTSSDDKV 318
+ +++ EYIML VND + A +L +L+ + VN+IP+NP+ + S+++ +
Sbjct: 254 TNRRVTFEYIMLKDVNDHVKEAEELAQLIRPYSQLAYVNMIPYNPVAEHIDYERSTEESI 313
Query: 319 SSFQKILRGSYNIRTTVRKQMGQDISGACGQL 350
++F +L+ + I VR++ G DI ACGQL
Sbjct: 314 NAFYHVLKKN-GINCVVRREHGTDIDAACGQL 344
>gi|379725016|ref|YP_005317147.1| protein RlmN2 [Paenibacillus mucilaginosus 3016]
gi|386727765|ref|YP_006194091.1| protein RlmN2 [Paenibacillus mucilaginosus K02]
gi|378573688|gb|AFC33998.1| RlmN2 [Paenibacillus mucilaginosus 3016]
gi|384094890|gb|AFH66326.1| protein RlmN2 [Paenibacillus mucilaginosus K02]
Length = 360
Score = 202 bits (513), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 115/339 (33%), Positives = 186/339 (54%), Gaps = 26/339 (7%)
Query: 22 GIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHSVVDSSDDVTTK 81
G K+ +W ++ ++ E + +LL F T H+ +S+D T K
Sbjct: 21 GHKKSRAAQVWDWLYRRRVTDFAEMTDVHPECTALLAEHFVFRTMNEHTKQESADG-TVK 79
Query: 82 LLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGF 141
L +LQ+G +E V+MR+ L ++C+++QVGC +GC+FCA+G +
Sbjct: 80 FLFQLQDGNLIETVLMRHKFGL--------------SVCVTTQVGCNIGCSFCASGLLAK 125
Query: 142 KSNLSSGEIVEQL----VHASRLSN---IRNVVFMGMGEPLNNYAALVEAVRIMTGLP-F 193
+L+SGEIVEQ+ +H N + ++V MG+GEP +N+ L++ + ++
Sbjct: 126 SRDLTSGEIVEQIMKVQLHLDAAGNDERVSHIVVMGIGEPFDNFTNLIDFLGVVIDHKGL 185
Query: 194 QVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNA 253
+ + ITVST G+ I +F +NLA+SLHAP ++R +IM +A P+EKLM A
Sbjct: 186 AIGARHITVSTSGLTQKIKEFADLNLRVNLAISLHAPNNELRSRIMKINKALPIEKLMEA 245
Query: 254 LKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQ--VVVNLIPFNPIGSVSQFR 311
+ Y + Q++ IEYI+L VND +HA +L +LL + V VNLIP+NP+ SQ++
Sbjct: 246 MDYYWAKTNQRVTIEYILLKDVNDRTEHALELAELLADRKQSVNVNLIPYNPVDEHSQYQ 305
Query: 312 TSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 350
+ + V +F L+ + +VR + G DI ACGQL
Sbjct: 306 RTEKESVRAFYDTLKKQ-GLSCSVRLEHGTDIDAACGQL 343
>gi|392375105|ref|YP_003206938.1| pyruvate formate lyase activating enzyme 2 (yfgB) [Candidatus
Methylomirabilis oxyfera]
gi|258592798|emb|CBE69107.1| putative pyruvate formate lyase activating enzyme 2 (yfgB)
[Candidatus Methylomirabilis oxyfera]
Length = 372
Score = 202 bits (513), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 112/255 (43%), Positives = 162/255 (63%), Gaps = 12/255 (4%)
Query: 112 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRL----SNIRNVV 167
P R T C+S+QVGC + C FC TG MGF +L SGE+V+Q++ R I N+V
Sbjct: 115 PDERRLTACLSTQVGCALACAFCLTGKMGFVRHLQSGEVVDQVLALQRDLQPGERIGNLV 174
Query: 168 FMGMGEPLNNYAALVEAVRIMT---GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLA 224
MGMGEPL+NY A V+A+ I++ GL + P+RIT+STVG+V I + G+NLA
Sbjct: 175 LMGMGEPLHNYDATVKALTILSHPMGLAY--PPRRITLSTVGLVPEIVRLGQSGLGVNLA 232
Query: 225 VSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQ 284
VSLHA ++R +++P R +PL++LM AL+ Y S++++ EY+++DGVND + A +
Sbjct: 233 VSLHASTDELRDRLVPINRRYPLKELMVALRAYPLPSRRRLTFEYVLIDGVNDRSEDARE 292
Query: 285 LGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDIS 344
L KLL + VNL+ N ++ FR S ++V FQ+ILR S +I T+R+ G DIS
Sbjct: 293 LVKLLRGLRCKVNLLSLNEAPAIP-FRRPSQERVEMFQRILR-SADILATIRESRGLDIS 350
Query: 345 GACGQLVVNLPDKIS 359
ACG L+ PD+ S
Sbjct: 351 AACG-LLATEPDQKS 364
>gi|111225135|ref|YP_715929.1| ribosomal RNA large subunit methyltransferase N [Frankia alni
ACN14a]
gi|122953799|sp|Q0RDQ8.1|RLMN_FRAAA RecName: Full=Probable dual-specificity RNA methyltransferase RlmN;
AltName: Full=23S rRNA
(adenine(2503)-C(2))-methyltransferase; AltName:
Full=23S rRNA m2A2503 methyltransferase; AltName:
Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=tRNA (adenine(37)-C(2))-methyltransferase;
AltName: Full=tRNA m2A37 methyltransferase
gi|111152667|emb|CAJ64408.1| Fe-S-cluster redox enzyme [Frankia alni ACN14a]
Length = 419
Score = 202 bits (513), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 115/291 (39%), Positives = 166/291 (57%), Gaps = 29/291 (9%)
Query: 76 DDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCA 135
D +T K + +G +E+VIMRY R+T+C+SSQ GC MGC FCA
Sbjct: 107 DGLTRKTAWRTADGALLESVIMRYPD--------------RATVCVSSQAGCGMGCPFCA 152
Query: 136 TGTMGFKSNLSSGEIVEQLVHASRL----------SNIRNVVFMGMGEPLNNYAALVEAV 185
TG G NLS+ EIVEQ+VHA+R+ + NVVFMGMGEPL NY A+ A+
Sbjct: 153 TGQGGLTRNLSTAEIVEQVVHAARVLRRQELAGGQGRLSNVVFMGMGEPLANYTAVTAAL 212
Query: 186 R-IMTGLP--FQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAA 242
R ++ P +S + +TVSTVG+V A+ + + + LAVSLHAP ++R +++P
Sbjct: 213 RRLIAPSPEGLGLSARGLTVSTVGLVPAMRRLAGEGLPVTLAVSLHAPDDELRDELVPIN 272
Query: 243 RAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFN 302
+P+ +++ A EY + + +++ IEY ++DGVND+ A L LL VNLIP N
Sbjct: 273 TRWPVAEVLAAAWEYAEVTGRRVSIEYALIDGVNDDVARADALATLLAGRLAHVNLIPLN 332
Query: 303 PIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVN 353
P S ++ S+ +F + LR I TTVR G++I+ ACGQL
Sbjct: 333 PTEG-SSWQASAPAGQRAFVRRLR-ERGIATTVRDTRGREIAAACGQLAAE 381
>gi|449137575|ref|ZP_21772901.1| radical SAM domain protein [Rhodopirellula europaea 6C]
gi|448884027|gb|EMB14534.1| radical SAM domain protein [Rhodopirellula europaea 6C]
Length = 379
Score = 202 bits (513), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 111/290 (38%), Positives = 166/290 (57%), Gaps = 20/290 (6%)
Query: 68 LHSVVDSSDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGC 127
L+ +DS D TKLL + ++G +E+VI+R + R+TLC+SSQ+GC
Sbjct: 64 LYQRMDSEIDGATKLLFETESGMLIESVILRIATG-------------RTTLCVSSQIGC 110
Query: 128 KMGCNFCATGTMGFKSNLSSGEIVEQLVHASRL-----SNIRNVVFMGMGEPLNNYAALV 182
C+FCATG MG NL++ EI++Q+V A ++ + N+VFMGMGEPL+N +
Sbjct: 111 AAACDFCATGKMGIAKNLATEEILDQVVQAGQILRGEDRRLSNIVFMGMGEPLHNEVNVT 170
Query: 183 EAVRIMTGLP-FQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPA 241
EA+ ++T F SP + VSTVG+ + + P LNLA+SLH+ Q R +I+P
Sbjct: 171 EAIELLTAPDHFARSPSTVLVSTVGVPAGMLRLAKRFPNLNLALSLHSADQTTREKIIPL 230
Query: 242 ARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPF 301
+ L +L + + E Q ++ IEY+ML VND + A++L + +V VNLIP+
Sbjct: 231 GKKASLTQLHDTIDEIQSIQDREFMIEYLMLRDVNDSTEDANRLIDWIGDLRVHVNLIPY 290
Query: 302 NPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLV 351
N I + S + SF IL+ S ++TTVR +G DI ACGQL+
Sbjct: 291 NTIEASPHLHASPRPVIESFADILKAS-GLKTTVRYSLGNDIEAACGQLI 339
>gi|410697864|gb|AFV76932.1| 23S rRNA m2A2503 methyltransferase [Thermus oshimai JL-2]
Length = 363
Score = 202 bits (513), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 120/331 (36%), Positives = 178/331 (53%), Gaps = 27/331 (8%)
Query: 42 EWDEFPSLPSAAYSLLRSKFKPLTSTLHSVVDSSDDVTTKLLVKLQNGGFVEAVIMRYDS 101
E+ E LP L +++ L S D + K L L +G EAV M Y++
Sbjct: 47 EFSEMTDLPKGLREALAQEWRISEFALVEAYPSRDG-SVKYLFTLLDGKKTEAVYMPYEN 105
Query: 102 SLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHAS--- 158
R T+C+SS VGC GC FCATG +GF NL++ EI++QL+ +
Sbjct: 106 --------------RKTVCLSSMVGCPAGCTFCATGALGFGRNLTAAEILDQLLAIAYHQ 151
Query: 159 --RLSNIRNVVFMGMGEPLNNYAALVEAVRIM---TGLPFQVSPKRITVSTVGIVHAINK 213
IRNVV MGMGEPL N +++AVR + GL +SP+RIT+STVGI I +
Sbjct: 152 GISPREIRNVVLMGMGEPLLNLTNVLKAVRTLLHPKGL--AMSPRRITLSTVGIPRGIYR 209
Query: 214 FHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLD 273
+ G+ LA+SLHAP + R +I+P A +P+ ++M A++ Y +++++ EY +L
Sbjct: 210 LAEEDLGIRLALSLHAPDDETRKKIIPTAHRYPIAEIMEAVRAYYAKTKRRVTFEYTLLQ 269
Query: 274 GVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRT 333
G+ND A L +LL+ VNLIPFNP + + + + +F + L+ I T
Sbjct: 270 GLNDHPWQARLLSRLLKGLSAHVNLIPFNPWPG-APVKGTPKAGILAFAEELK-RQGIPT 327
Query: 334 TVRKQMGQDISGACGQLVVNLPDKISAKSTP 364
+VR GQD+ ACGQL + P ++ K P
Sbjct: 328 SVRFSRGQDVGAACGQLALRTPQALTFKPLP 358
>gi|293557268|ref|ZP_06675815.1| radical SAM enzyme, Cfr family [Enterococcus faecium E1039]
gi|291600555|gb|EFF30860.1| radical SAM enzyme, Cfr family [Enterococcus faecium E1039]
Length = 355
Score = 202 bits (513), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 121/356 (33%), Positives = 186/356 (52%), Gaps = 30/356 (8%)
Query: 18 FEKAGIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKF--KPLTSTLHSVVDSS 75
F + G K+ +W+++ + + E +L L F PL VV +
Sbjct: 18 FIENGEKKFRAAQVWEWLYQKRVSNFTEMTNLSKQLIEKLSEHFIINPLKQM---VVQEA 74
Query: 76 DDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCA 135
D T K L +L + +E V+MR + L ++C+++QVGC +GC FCA
Sbjct: 75 SDGTVKYLFELPDKNMIETVLMRQEYGL--------------SVCVTTQVGCNIGCTFCA 120
Query: 136 TGTMGFKSNLSSGEIVEQLVHASRLSNIRN-------VVFMGMGEPLNNYAALVEAVRIM 188
+G + +L++GEIV Q++ + RN VV MG+GEP +NY +++ + I+
Sbjct: 121 SGLLKKNRDLTAGEIVAQIMMVQHYFDERNLGERVSHVVVMGIGEPFDNYDNVMDFLHII 180
Query: 189 TGLP-FQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPL 247
+ + ITVST G+ H I +F ++ +NLA+SLHAP +VR IM R+FP+
Sbjct: 181 NDAKGLAIGARHITVSTSGLAHKIKEFANNGLQVNLAISLHAPNNEVRTSIMRINRSFPI 240
Query: 248 EKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQ--VVVNLIPFNPIG 305
EKLM A+ EY + + ++I EYIML+ VND +HA QL LL+ + VNLIP+NP+
Sbjct: 241 EKLMEAVDEYLEKTNRRITFEYIMLNQVNDRPEHAQQLADLLKDKKKLAYVNLIPYNPVS 300
Query: 306 SVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDKISAK 361
Q+ V F +L+ + + +RK+ G DI ACGQL K AK
Sbjct: 301 EHDQYSRCPKADVLRFYDVLKKN-GVNCVIRKEHGTDIDAACGQLRSKQMKKTVAK 355
>gi|450005125|ref|ZP_21826509.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
mutans NMT4863]
gi|449188989|gb|EMB90673.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
mutans NMT4863]
Length = 361
Score = 202 bits (513), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 120/356 (33%), Positives = 193/356 (54%), Gaps = 34/356 (9%)
Query: 22 GIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKF--KPLTSTLHSVVDSSDDVT 79
G K+ IW ++ ++E +L +LL F PL +V S+D T
Sbjct: 21 GEKKFRATQIWDWLYRKRVQSFEEMTNLSKDFIALLNENFLVNPLK---QRIVQESEDGT 77
Query: 80 TKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTM 139
K L +L +G +E V+MR L ++C+++QVGC +GC FCA+G +
Sbjct: 78 VKYLFELPDGMLIETVLMRQHYGL--------------SVCVTTQVGCNIGCTFCASGLI 123
Query: 140 GFKSNLSSGEIVEQLVHASRL-------SNIRNVVFMGMGEPLNNYAALVEAVRIMT--- 189
+ +L++GEI Q++ + I +VV MG+GEP +NY +++ +R +
Sbjct: 124 KKQRDLNNGEITAQIMLVQKYFDERGQGERISHVVVMGIGEPFDNYDNVLKFLRTINDDN 183
Query: 190 GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEK 249
GL + + ITVST G+ H I F ++ +NLAVSLHAP ++R IM R+FPLEK
Sbjct: 184 GLA--IGARHITVSTSGLAHKIRDFANEGVQVNLAVSLHAPNNELRSSIMRINRSFPLEK 241
Query: 250 LMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVV--VNLIPFNPIGSV 307
L A++ Y + + +++ EYIML+GVND ++A +L L + + + VNLIP+NP+
Sbjct: 242 LFAAIEYYIETTNRRVTFEYIMLNGVNDNPENAQELADLTKKIRKLSYVNLIPYNPVTEH 301
Query: 308 SQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDKISAKST 363
Q+ S ++V +F +L+ + + VR++ G DI ACGQL N + K+T
Sbjct: 302 DQYSRSPKERVDAFYDVLKKN-GVNCVVRQEHGTDIDAACGQLRSNTMKRDREKAT 356
>gi|337752109|ref|YP_004646271.1| protein RlmN2 [Paenibacillus mucilaginosus KNP414]
gi|336303298|gb|AEI46401.1| RlmN2 [Paenibacillus mucilaginosus KNP414]
Length = 361
Score = 202 bits (513), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 115/339 (33%), Positives = 186/339 (54%), Gaps = 26/339 (7%)
Query: 22 GIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHSVVDSSDDVTTK 81
G K+ +W ++ ++ E + +LL F T H+ +S+D T K
Sbjct: 22 GHKKSRAAQVWDWLYRRRVTDFAEMTDVHPECTALLAEHFVFRTMNEHTKQESADG-TVK 80
Query: 82 LLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGF 141
L +LQ+G +E V+MR+ L ++C+++QVGC +GC+FCA+G +
Sbjct: 81 FLFQLQDGNLIETVLMRHKFGL--------------SVCVTTQVGCNIGCSFCASGLLAK 126
Query: 142 KSNLSSGEIVEQL----VHASRLSN---IRNVVFMGMGEPLNNYAALVEAVRIMTGLP-F 193
+L+SGEIVEQ+ +H N + ++V MG+GEP +N+ L++ + ++
Sbjct: 127 SRDLTSGEIVEQIMKVQLHLDAAGNDERVSHIVVMGIGEPFDNFTNLIDFLGVVIDHKGL 186
Query: 194 QVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNA 253
+ + ITVST G+ I +F +NLA+SLHAP ++R +IM +A P+EKLM A
Sbjct: 187 AIGARHITVSTSGLTQKIKEFADLNLRVNLAISLHAPNNELRSRIMKINKALPIEKLMEA 246
Query: 254 LKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQ--VVVNLIPFNPIGSVSQFR 311
+ Y + Q++ IEYI+L VND +HA +L +LL + V VNLIP+NP+ SQ++
Sbjct: 247 MDYYWAKTNQRVTIEYILLKDVNDRTEHALELAELLADRKQSVNVNLIPYNPVDEHSQYQ 306
Query: 312 TSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 350
+ + V +F L+ + +VR + G DI ACGQL
Sbjct: 307 RTEKESVRAFYDTLKKQ-GLSCSVRLEHGTDIDAACGQL 344
>gi|289764771|ref|ZP_06524149.1| radical SAM family enzyme [Fusobacterium sp. D11]
gi|289716326|gb|EFD80338.1| radical SAM family enzyme [Fusobacterium sp. D11]
Length = 358
Score = 202 bits (513), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 120/336 (35%), Positives = 184/336 (54%), Gaps = 17/336 (5%)
Query: 22 GIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSK-FKPLTSTLHSVVDSSDDVTT 80
G+K+ + ++ ++ + + E +L +L+ K + P + L + S D T
Sbjct: 24 GLKKFYGKEVFIWLHKKITRSFGEMTNLSLKDREILKEKTYIPFFNLLKHQI-SKIDRTE 82
Query: 81 KLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMG 140
K L +L++ G +E V++R+ S K R+TLC+SSQVGC + C+FCATG G
Sbjct: 83 KFLFELEDKGTIETVLLRHKDSKNK--------EIRNTLCVSSQVGCPVKCSFCATGQSG 134
Query: 141 FKSNLSSGEIVEQLVHASRL-----SNIRNVVFMGMGEPLNNYAALVEAVRIMTGLP-FQ 194
+ NLS EI+ Q+ R + N+VFMGMGEPL N L +A+ I++
Sbjct: 135 YMRNLSVSEILNQIYTIERRLRKKGETLNNLVFMGMGEPLLNIDNLSKALSIISNENGIN 194
Query: 195 VSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNAL 254
+S ++IT+ST G+V I K D + LA+SLH+ + + R +I+P + FPLE L L
Sbjct: 195 ISKRKITISTSGVVSGIEKILLDKIPIELAISLHSAINEKRDKIIPLNKNFPLEDLSAVL 254
Query: 255 KEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSS 314
EYQK ++++I EYI++D N E A+ L + F VVNLIP+N + V R S
Sbjct: 255 IEYQKQTKRRITFEYILIDNFNISETDANALADFVHQFDHVVNLIPYNEVEGVEHTRPSV 314
Query: 315 DDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 350
K+ F L+ + T+R++ G DI GACGQL
Sbjct: 315 -KKIDKFYNYLKNVRKVNVTLRQEKGSDIDGACGQL 349
>gi|345002345|ref|YP_004805199.1| radical SAM enzyme, Cfr family [Streptomyces sp. SirexAA-E]
gi|344317971|gb|AEN12659.1| radical SAM enzyme, Cfr family [Streptomyces sp. SirexAA-E]
Length = 368
Score = 201 bits (512), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 131/367 (35%), Positives = 188/367 (51%), Gaps = 41/367 (11%)
Query: 1 MTYDYRSVFDGGIIRAEFEKAGIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSK 60
+T D R I F + QH+ +Y +P EW P+ + L +
Sbjct: 25 LTPDERKEAVAAIGEKPFRAKQLSQHYFA---RYA-HDP-AEWTNIPA--GSRDRLAEAM 77
Query: 61 FKPLTSTLHSVVDSSDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLC 120
F L S + + DD T K L KL +G VE+V+MRY R T+C
Sbjct: 78 FPDLMSVVRHI-SCDDDTTRKTLWKLHDGTLVESVLMRYPY--------------RVTMC 122
Query: 121 ISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRL----------SNIRNVVFMG 170
ISSQ GC M C FCATG G NLS+ EIV Q+V R + + N+VFMG
Sbjct: 123 ISSQAGCGMNCPFCATGQAGLDRNLSTAEIVHQIVDGMRALRDGEVPGGPARLSNIVFMG 182
Query: 171 MGEPLNNYAALVEAVRIMT-----GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAV 225
MGEPL NY +V A+R +T GL +S + ITVSTVG+V A+ +F + LAV
Sbjct: 183 MGEPLANYKRVVGAIRRLTDPEPDGL--GLSQRGITVSTVGLVPAMLRFADEGFKCRLAV 240
Query: 226 SLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQL 285
SLHAP ++R ++P + + ++++A EY + S ++I IEY ++ +ND+ L
Sbjct: 241 SLHAPDDELRDTLVPVNTRWKVREVLDAAWEYAEKSGRRISIEYALIRDINDQAWRGDLL 300
Query: 286 GKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISG 345
G+LL+ +V VNLIP NP + +D+ + + I ++ + TVR GQ+I G
Sbjct: 301 GRLLKGKRVHVNLIPLNPTPGSKWTASRPEDEKAFVEAI--AAHGVPVTVRDTRGQEIDG 358
Query: 346 ACGQLVV 352
ACGQL
Sbjct: 359 ACGQLAA 365
>gi|339302024|ref|ZP_08651095.1| cfr family radical SAM enzyme [Streptococcus agalactiae ATCC 13813]
gi|319744504|gb|EFV96859.1| cfr family radical SAM enzyme [Streptococcus agalactiae ATCC 13813]
Length = 374
Score = 201 bits (512), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 118/346 (34%), Positives = 191/346 (55%), Gaps = 34/346 (9%)
Query: 22 GIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKF--KPLTSTLHSVVDSSDDVT 79
G K+ IW ++ + +DE ++ +LL F PL +V S D T
Sbjct: 36 GEKKFRASQIWDWLYKKRVQSFDEMTNISKDFIALLNENFVVNPLK---QRIVQESADGT 92
Query: 80 TKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTM 139
K L +L +G +E V+MR L ++C+++QVGC +GC FCA+G +
Sbjct: 93 VKYLFELPDGMLIETVLMRQHYGL--------------SVCVTTQVGCNIGCTFCASGLI 138
Query: 140 GFKSNLSSGEIVEQLVHASRLSNIR-------NVVFMGMGEPLNNYAALVEAVRIMT--- 189
+ +L++GEI Q++ + + R ++V MG+GEP +NY +++ +R +
Sbjct: 139 KKQRDLNNGEITAQIMLVQKYFDERGQGERVSHIVVMGIGEPFDNYTNVLKFLRTVNDDN 198
Query: 190 GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEK 249
GL + + ITVST G+ H I +F ++ +NLAVSLHAP D+R IM R+FPLEK
Sbjct: 199 GLA--IGARHITVSTSGLAHKIREFANEGVQVNLAVSLHAPNNDLRSSIMRINRSFPLEK 256
Query: 250 LMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVV--VNLIPFNPIGSV 307
L A++ Y + + +++ EYIML+GVND ++A +L L + + + VNLIP+NP+
Sbjct: 257 LFAAIEYYIETTNRRVTFEYIMLNGVNDTPENAQELADLTKKIRKLSYVNLIPYNPVSEH 316
Query: 308 SQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVN 353
Q+ S ++V +F +L+ + + VR++ G DI ACGQL N
Sbjct: 317 DQYSRSPKERVEAFYDVLKKN-GVNCVVRQEHGTDIDAACGQLRSN 361
>gi|449887842|ref|ZP_21787072.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
mutans SA41]
gi|449251974|gb|EMC49967.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
mutans SA41]
Length = 361
Score = 201 bits (512), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 121/360 (33%), Positives = 193/360 (53%), Gaps = 34/360 (9%)
Query: 22 GIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKF--KPLTSTLHSVVDSSDDVT 79
G K+ IW ++ ++E +L +LL F PL +V S D T
Sbjct: 21 GEKKFRATQIWDWLYRKRVQSFEEMTNLSKDFIALLNENFLVNPLK---QRIVQESADGT 77
Query: 80 TKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTM 139
K L +L +G +E V+MR L ++C+++QVGC +GC FCA+G +
Sbjct: 78 VKYLFELPDGMLIETVLMRQHYGL--------------SVCVTTQVGCNIGCTFCASGLI 123
Query: 140 GFKSNLSSGEIVEQLVHASRL-------SNIRNVVFMGMGEPLNNYAALVEAVRIMT--- 189
+ +L++GEI Q++ + I +VV MG+GEP +NY +++ +R +
Sbjct: 124 KKQRDLNNGEITAQIMLVQKYFDERGQGERISHVVVMGIGEPFDNYDNVLKFLRTINDDN 183
Query: 190 GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEK 249
GL + + ITVST G+ H I F ++ +NLAVSLHAP ++R IM R+FPLEK
Sbjct: 184 GLA--IGARHITVSTSGLAHKIRDFANEGVQVNLAVSLHAPNNELRSSIMRINRSFPLEK 241
Query: 250 LMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVV--VNLIPFNPIGSV 307
L A++ Y + + +++ EYIML+GVND ++A +L L + + + VNLIP+NP+
Sbjct: 242 LFAAIEYYIETTNRRVTFEYIMLNGVNDNPENAQELADLTKKIRKLSYVNLIPYNPVTEH 301
Query: 308 SQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDKISAKSTPPVT 367
Q+ S ++V +F +L+ + + VR++ G DI ACGQL N + K+T T
Sbjct: 302 DQYSRSPKERVDAFYDVLKKN-GVNCVVRQEHGTDIDAACGQLRSNTMKRDREKATAGTT 360
>gi|348590089|ref|YP_004874551.1| ribosomal RNA large subunit methyltransferase N [Taylorella
asinigenitalis MCE3]
gi|347973993|gb|AEP36528.1| Ribosomal RNA large subunit methyltransferase N [Taylorella
asinigenitalis MCE3]
Length = 380
Score = 201 bits (512), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 122/301 (40%), Positives = 164/301 (54%), Gaps = 35/301 (11%)
Query: 75 SDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFC 134
S D T K L +QN +E V + P R TLCISSQ GC + C FC
Sbjct: 77 SSDGTIKWLFDVQNNNAIETVYI--------------PEDDRGTLCISSQAGCTVACRFC 122
Query: 135 ATGTMGFKSNLSSGEIVEQL----------------VHASRLSNIRNVVFMGMGEPLNNY 178
+TG GF NLS+ EI+ Q+ A I NVVFMGMGEPL NY
Sbjct: 123 STGHQGFNRNLSTSEIIGQVWWARDEIKKSLNTDSGFEAEDDRVITNVVFMGMGEPLLNY 182
Query: 179 AALVEAVRIMTGL-PFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQ 237
++ A++++ + +S +R+TVST G++ ++K D P + LAVSLHAP ++R Q
Sbjct: 183 DQVLPAIKLLIDQNAYGLSKRRVTVSTSGVIPFMDKLSQDCP-VALAVSLHAPNDELRDQ 241
Query: 238 IMPAARAFPLEKLMNALKEYQKNSQQK-IFIEYIMLDGVNDEEQHAHQLGKLLETFQVVV 296
++P + +PL +LM+A Y + + I EYIMLDGVND + HA QL + + V
Sbjct: 242 LIPLNKKYPLRELMDACNRYIDFAPRDFITFEYIMLDGVNDTDAHAKQLIDICREVKSKV 301
Query: 297 NLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPD 356
NLIPFNP S R SS ++V +F IL G+ I T RK G DI ACGQL ++ D
Sbjct: 302 NLIPFNPFPE-SGLRRSSHERVRAFSAILNGA-GIVATTRKTRGDDIDAACGQLAGDIKD 359
Query: 357 K 357
K
Sbjct: 360 K 360
>gi|363897057|ref|ZP_09323600.1| cfr family radical SAM enzyme [Oribacterium sp. ACB7]
gi|361959684|gb|EHL12960.1| cfr family radical SAM enzyme [Oribacterium sp. ACB7]
Length = 350
Score = 201 bits (512), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 127/343 (37%), Positives = 185/343 (53%), Gaps = 28/343 (8%)
Query: 20 KAGIKQHFIPL-----IWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHSVVDS 74
+A + +H P I+++V E ++ E +LP LR +F L+ S
Sbjct: 13 EAWVLEHHFPRYRAEQIFRWVQEKDVTDFSEMENLPKDLRQALREEFSLALPELYRRYTS 72
Query: 75 SDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFC 134
D T K L L +G +EAV M Y ++G +T CIS+QVGC+MGC FC
Sbjct: 73 KLDETEKFLFTLADGHRIEAVFMAY------HHG--------NTACISTQVGCRMGCAFC 118
Query: 135 ATGTMGFKSNLSSGEIVEQLVHASRLS--NIRNVVFMGMGEPLNNYAALVEAVRIMTG-L 191
A+ G N SSGE++ Q+V L+ I NVV MG GEPL+NY ++ + +++G +
Sbjct: 119 ASTLSGLARNCSSGEMLGQIVAIEHLTGKKISNVVLMGSGEPLDNYMEVLRFIHLLSGKI 178
Query: 192 PFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLM 251
+S + IT+ST GIV I + + G+ LA+SLHA + R +IMP A + L +M
Sbjct: 179 GRNISQRNITLSTCGIVPRILELAEEKLGITLALSLHAATDEKRKKIMPIANRYALSDVM 238
Query: 252 NALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLL----ETFQVVVNLIPFNPIGSV 307
A++ Y K + ++I EY ++ GVND E+ +L LL E F VNLIP NPI
Sbjct: 239 EAVRFYFKKTGRRISFEYALVFGVNDGEEDIRELSGLLKKKGEHFPAHVNLIPVNPIKE- 297
Query: 308 SQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 350
F K++ F++ L I T+R++MG DISGACGQL
Sbjct: 298 RDFTAPDRKKINRFKEGLE-KQGITCTIRREMGADISGACGQL 339
>gi|375089670|ref|ZP_09735995.1| 23S rRNA methyltransferase [Facklamia languida CCUG 37842]
gi|374566517|gb|EHR37756.1| 23S rRNA methyltransferase [Facklamia languida CCUG 37842]
Length = 375
Score = 201 bits (512), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 113/345 (32%), Positives = 189/345 (54%), Gaps = 31/345 (8%)
Query: 18 FEKAGIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKF--KPLTSTLHSVVDSS 75
E G K + IW+++ + +DE ++P L+ +F PL + ++ +
Sbjct: 16 LEDKGEKPYRADQIWQWLYRHHVASYDEMTNIPKTILDQLKQEFIFSPLRT---QIIQKA 72
Query: 76 DDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCA 135
D TTK L +LQ+ +E V+M + + ++C+++Q+GC +GC FCA
Sbjct: 73 QDQTTKFLFELQDHSMIETVLMYHHYGI--------------SVCVTTQIGCNIGCKFCA 118
Query: 136 TGTMGFKSNLSSGEIVEQLVHASRLSN-------IRNVVFMGMGEPLNNYAALVEAVRIM 188
+G + +L +GEIV Q++ R N + ++V MG+GEP +NY +++ +RI+
Sbjct: 119 SGLIPKVRDLEAGEIVAQIMFIQRYLNQQAKGEKVSHIVVMGIGEPFDNYDNVLQFIRIV 178
Query: 189 -TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPL 247
+ + + ITVST G+ I +F + +NLAVSLHAP + R IM R +P+
Sbjct: 179 NSDKGMAIGARHITVSTSGLAPKIRQFARENIQVNLAVSLHAPNNETRSSIMKINRQYPI 238
Query: 248 EKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETF--QVVVNLIPFNPIG 305
E+L A+ EY + +++ EYIM+DGVND +HA +L KLL VNLIP+NP+
Sbjct: 239 EELFEAIYEYIHLTNRRVTFEYIMIDGVNDRPEHAIELAKLLRPMLKLAYVNLIPYNPVA 298
Query: 306 SVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 350
+ F SS++ ++ F +L + + VR++ G++I ACGQL
Sbjct: 299 E-NPFERSSEENIARFYDLLMQN-GVNCVVRREHGKEIEAACGQL 341
>gi|34556516|ref|NP_906331.1| ribosomal RNA large subunit methyltransferase N [Wolinella
succinogenes DSM 1740]
gi|81833710|sp|Q7MSW1.1|RLMN_WOLSU RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|34482230|emb|CAE09231.1| conserved hypothetical protein [Wolinella succinogenes]
Length = 359
Score = 201 bits (512), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 119/317 (37%), Positives = 191/317 (60%), Gaps = 15/317 (4%)
Query: 44 DEFPSLPSAAYSLLRSKFKPLTSTLHSVV--DSSDDVTTKLLVKLQNGGFVEAVIMRYDS 101
+EF + + + + + + ++TL VV + S+D + K L + +G EAV+++
Sbjct: 35 EEFEKMHNLSKEIRQKLTQDYSATLTKVVREEVSEDGSRKYLFQTHDGLTYEAVLLKMKE 94
Query: 102 SLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLS 161
G+ G + T+C+SSQVGCK+GC+FC T GF NLS+GEIV Q+V RL+
Sbjct: 95 KKEDEEGRIVEG-EKYTICVSSQVGCKVGCSFCFTAKGGFVRNLSAGEIVYQIVALKRLN 153
Query: 162 NIR-----NVVFMGMGEPLNNYAALVEAVRIMTGLP-FQVSPKRITVSTVGIVHAINKFH 215
+ N+V+MGMGEPL+N+ L++A+RI++ L +S KR T+ST GI I K
Sbjct: 154 ALAPEKRVNIVYMGMGEPLDNFENLIQAIRILSELDGLSISTKRQTISTSGIAPKIEKLG 213
Query: 216 SDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGV 275
+ G+ LA+SLHA ++R +++P +A+ + ++ A++ + +S++++ EY+++ GV
Sbjct: 214 ALDLGVQLAISLHAVDDELRTRLIPMNKAYNIASIIEAVRRFPIDSRKRVMFEYLVIKGV 273
Query: 276 NDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKIL--RGSYNIRT 333
ND+E+ A L KLL + VNLI FNP S+F + K+ +FQK L RG +
Sbjct: 274 NDDEKSAKTLLKLLNGIKSKVNLIYFNP-HEGSEFERPLESKMVAFQKYLTDRG---LLC 329
Query: 334 TVRKQMGQDISGACGQL 350
T+R+ G DIS ACGQL
Sbjct: 330 TIRESKGIDISAACGQL 346
>gi|289433758|ref|YP_003463630.1| radical SAM family protein [Listeria seeligeri serovar 1/2b str.
SLCC3954]
gi|289170002|emb|CBH26542.1| radical SAM family protein [Listeria seeligeri serovar 1/2b str.
SLCC3954]
Length = 367
Score = 201 bits (512), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 119/346 (34%), Positives = 190/346 (54%), Gaps = 32/346 (9%)
Query: 18 FEKAGIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHS-VVDSSD 76
E+ G K+ +W ++ ++E ++P LL + F + STL VV S
Sbjct: 18 LEEHGQKKFRATQVWDWLYRKRVKTFEEMSNVPKETIELLTANF--VMSTLEEQVVQEST 75
Query: 77 DVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCAT 136
D TTK L KL +G +E V+M+ + L ++C+++QVGC +GC FCA+
Sbjct: 76 DGTTKYLFKLSDGNLIETVMMKQEYGL--------------SVCVTTQVGCNIGCTFCAS 121
Query: 137 GTMGFKSNLSSGEIVEQLVHASRLSNIRN-------VVFMGMGEPLNNYAALVEAVRIMT 189
G + +L++GEIVEQ+++ + RN VV MG+GEP +NY +++ +R++
Sbjct: 122 GLLKKSRDLTAGEIVEQIMNVQHYLDGRNLEERVSHVVVMGIGEPFDNYDNVMDFLRVIN 181
Query: 190 ---GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFP 246
GL + + ITVST G+ I F ++ +NLA+SLHAP ++R IM + +
Sbjct: 182 HDKGLA--IGARHITVSTSGLAPRIIDFANEDFQVNLAISLHAPNNELRTSIMRINKTYS 239
Query: 247 LEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQ--VVVNLIPFNPI 304
+EKLM A+ Y + + ++I EYIML GVND ++ A +L LL + VNLIP+NP+
Sbjct: 240 IEKLMEAIHYYVEKTNRRITFEYIMLKGVNDHKKEALELAALLGEHRHLAYVNLIPYNPV 299
Query: 305 GSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 350
+ S+ + V +F L+ + I +R++ G DI ACGQL
Sbjct: 300 DEHIDYERSTKEDVLAFYDTLKKN-GINCVIRREHGTDIDAACGQL 344
>gi|329936699|ref|ZP_08286406.1| Ribosomal RNA large subunit methyltransferase N [Streptomyces
griseoaurantiacus M045]
gi|329303929|gb|EGG47812.1| Ribosomal RNA large subunit methyltransferase N [Streptomyces
griseoaurantiacus M045]
Length = 370
Score = 201 bits (512), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 119/324 (36%), Positives = 175/324 (54%), Gaps = 33/324 (10%)
Query: 45 EFPSLPSAAYSLLRSKFKPLTSTLHSVVDSSDDVTTKLLVKLQNGGFVEAVIMRYDSSLG 104
E+ +P+A+ LR P T+ + + D T K L +L +G VE+V+MRY
Sbjct: 63 EWTDIPAASRGRLREALLPELMTVVRHLSTDADTTRKTLWRLFDGTLVESVLMRYPD--- 119
Query: 105 KYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRL---- 160
R T+CISSQ GC M C FCATG G NLS+ EIV Q+V R
Sbjct: 120 -----------RVTMCISSQAGCGMNCPFCATGQAGLDRNLSTAEIVHQIVDGMRALRDG 168
Query: 161 ------SNIRNVVFMGMGEPLNNYAALVEAVRIMT-----GLPFQVSPKRITVSTVGIVH 209
+ + N+VFMGMGEPL NY +V A+R +T GL +S + ITVSTVG+V
Sbjct: 169 EIPGGPARLSNIVFMGMGEPLANYNRVVAAIRRLTDPEPDGL--GLSQRGITVSTVGLVP 226
Query: 210 AINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEY 269
AI++F + LA+SLHAP ++R ++P + + ++++A EY S +++ IEY
Sbjct: 227 AIHRFTDEGFKCRLAISLHAPDDELRDTLVPVNTRWKVREVLDAGFEYAARSGRRLSIEY 286
Query: 270 IMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSY 329
++ +ND+ +LG+LL+ V VNLIP NP + +D+ + + I ++
Sbjct: 287 ALIRDINDQAWRGDRLGRLLKGRPVHVNLIPLNPTPGSKWTASRPEDEKAFVEAI--AAH 344
Query: 330 NIRTTVRKQMGQDISGACGQLVVN 353
+ TVR GQ+I GACGQL
Sbjct: 345 GVPVTVRDTRGQEIDGACGQLAAT 368
>gi|302542187|ref|ZP_07294529.1| cfr family radical SAM enzyme [Streptomyces hygroscopicus ATCC
53653]
gi|302459805|gb|EFL22898.1| cfr family radical SAM enzyme [Streptomyces himastatinicus ATCC
53653]
Length = 372
Score = 201 bits (512), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 127/351 (36%), Positives = 188/351 (53%), Gaps = 41/351 (11%)
Query: 18 FEKAGIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHSVVDSSDD 77
F A + +H+ +Y ++P +W + +P+AA L + P ++ + DD
Sbjct: 46 FRAAQVSRHYFA---RYT-DDP-AQWTD---VPAAAREKLAAGLLPDLMSVVRHISCDDD 97
Query: 78 VTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATG 137
T K L +L +G VE+V+MRY R T+CISSQ GC M C FCATG
Sbjct: 98 TTRKTLWRLFDGTLVESVLMRYPD--------------RVTMCISSQAGCGMNCPFCATG 143
Query: 138 TMGFKSNLSSGEIVEQLVHASRL----------SNIRNVVFMGMGEPLNNYAALVEAVRI 187
G NLS+ EIV Q+V R + + N+VFMGMGEPL NY ++ A+R
Sbjct: 144 QAGLDRNLSTAEIVHQIVDGMRALRDGEIPGGPARLSNIVFMGMGEPLANYNRVIGAIRR 203
Query: 188 MT-----GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAA 242
+T GL +S + ITVSTVG+V A+ +F + LAVSLHAP ++R ++P
Sbjct: 204 LTDPEPDGL--GLSQRGITVSTVGLVPAMLRFADEGFKCRLAVSLHAPDDELRDTLVPVN 261
Query: 243 RAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFN 302
+ + ++++A EY + S ++I IEY ++ +ND+ A LG+LL+ +V VNLIP N
Sbjct: 262 TRWKVREVLDAAWEYAEKSGRRISIEYALIKDINDQAWRADLLGRLLKGHRVHVNLIPLN 321
Query: 303 PIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVN 353
P S++ S + +F L + + TVR GQ+I GACGQL
Sbjct: 322 PTPG-SKWTASRPEDEKAFVAALE-RHGVPVTVRDTRGQEIDGACGQLAAT 370
>gi|283769598|ref|ZP_06342494.1| radical SAM enzyme, Cfr family [Bulleidia extructa W1219]
gi|283103866|gb|EFC05252.1| radical SAM enzyme, Cfr family [Bulleidia extructa W1219]
Length = 348
Score = 201 bits (512), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 121/341 (35%), Positives = 189/341 (55%), Gaps = 34/341 (9%)
Query: 19 EKAGIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKF--KPLTSTLHSVVDSSD 76
+K KQ F L K V+ ++E LP++ L+S F P+ + V S
Sbjct: 22 KKYRAKQLFTWLYRKRVLS-----FEEMTDLPTSFIEELKSHFIIMPVKEVMRQV---SK 73
Query: 77 DVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCAT 136
D T K L L++G +E V+M ++ +LC++SQ+GC MGC FCA+
Sbjct: 74 DGTRKYLFSLEDGSSIETVLMHFNFG--------------ESLCVTSQLGCNMGCTFCAS 119
Query: 137 GTMGFKSNLSSGEIVEQLVHASRL---SNIR--NVVFMGMGEPLNNYAALVEAVRIMT-G 190
G + + +LS GEI+ QL++ + N+R N+V MG GEP +NY ++ +
Sbjct: 120 GLLKKQRDLSQGEILGQLMYVQKELDSENLRISNIVVMGTGEPFDNYDHVLGFCKTANQD 179
Query: 191 LPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKL 250
+ + + IT+ST GIV I +F NLA+SLHAP Q++R ++MP +PL +L
Sbjct: 180 IGLGIGARHITISTCGIVPKIREFSKSHYQYNLAISLHAPNQELRDKLMPINHRYPLSEL 239
Query: 251 MNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQF 310
M++LKEY +++ ++I EYI+L GVND +QHA +L L+ VNLIP+N + +
Sbjct: 240 MDSLKEYSESNHRRITFEYILLHGVNDSDQHAIELAHLIRGMNAYVNLIPYNKVD--EKG 297
Query: 311 RTSSDDKVS-SFQKILRGSYNIRTTVRKQMGQDISGACGQL 350
S+DDK + F +L + ++ T+R++ G DI ACGQL
Sbjct: 298 YESTDDKTALHFYDVLM-KHGVKATLRQKHGDDIDAACGQL 337
>gi|392532134|ref|ZP_10279271.1| ribosomal RNA large subunit methyltransferase N [Carnobacterium
maltaromaticum ATCC 35586]
gi|414085179|ref|YP_006993890.1| radical SAM superfamily protein [Carnobacterium maltaromaticum
LMA28]
gi|412998766|emb|CCO12575.1| radical SAM superfamily protein [Carnobacterium maltaromaticum
LMA28]
Length = 355
Score = 201 bits (512), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 117/345 (33%), Positives = 185/345 (53%), Gaps = 30/345 (8%)
Query: 18 FEKAGIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKF--KPLTSTLHSVVDSS 75
F + G K +W ++ + + +L LL F +PL + VV S
Sbjct: 17 FVENGQKAFRATQVWDWLYVKRVTSFAKMTNLSKELIQLLEENFIVQPL---IQKVVQES 73
Query: 76 DDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCA 135
+D T K L +L +G +E V+MR++ L ++C+++QVGC +GC FCA
Sbjct: 74 NDGTIKYLFELHDGLLIETVLMRHEYGL--------------SVCVTTQVGCNIGCTFCA 119
Query: 136 TGTMGFKSNLSSGEIVEQLVHASRL-------SNIRNVVFMGMGEPLNNYAALVEAVRIM 188
+G + + +L++GEIV Q++ + + ++V MG+GEP +NY ++ +RI+
Sbjct: 120 SGLLKKQRDLTAGEIVAQIMQVQQYLDEKETGDRVSHIVVMGIGEPFDNYDNVMSFLRIV 179
Query: 189 TGLP-FQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPL 247
+ + ITVST G+ I +F + +NLA+SLHAP ++R IM R FP+
Sbjct: 180 NNEKGLSIGARHITVSTSGLAPKIKEFAENGLQVNLAISLHAPNNEIRTSIMRINRNFPI 239
Query: 248 EKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLL--ETFQVVVNLIPFNPIG 305
EKLM+A+ Y + + ++I EYIML GVND+++ A +L KLL + VNLIP+N +
Sbjct: 240 EKLMDAVDYYLEKTNRRITFEYIMLRGVNDQKEQALELAKLLADKRHLAYVNLIPYNAVS 299
Query: 306 SVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 350
Q+ S V +F L+ I + VRK+ G DI ACGQL
Sbjct: 300 EHDQYSRSKKADVLAFHDTLKKK-GINSVVRKEQGSDIDAACGQL 343
>gi|430860757|ref|ZP_19478352.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E1573]
gi|430551075|gb|ELA90844.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E1573]
Length = 355
Score = 201 bits (512), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 121/356 (33%), Positives = 185/356 (51%), Gaps = 30/356 (8%)
Query: 18 FEKAGIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKF--KPLTSTLHSVVDSS 75
F + G K+ +W+++ + + E +L L F PL VV +
Sbjct: 18 FIENGEKKFRAAQVWEWLYQKRVSNFTEMTNLSKQLIEKLSEHFIINPLKQM---VVQEA 74
Query: 76 DDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCA 135
D T K L +L + +E V+MR + +C+++QVGC +GC FCA
Sbjct: 75 SDGTVKYLFELPDKNMIETVLMRQEYGF--------------LVCVTTQVGCNIGCTFCA 120
Query: 136 TGTMGFKSNLSSGEIVEQLVHASRLSNIRN-------VVFMGMGEPLNNYAALVEAVRIM 188
+G + +L++GEIV Q++ + RN VV MG+GEP +NY +++ + I+
Sbjct: 121 SGLLKKNRDLTAGEIVAQIMMVQHYFDERNLGERVSHVVVMGIGEPFDNYDNVMDFLHII 180
Query: 189 TGLP-FQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPL 247
+ + ITVST G+ H I +F ++ +NLA+SLHAP +VR IM R+FP+
Sbjct: 181 NDAKGLAIGARHITVSTSGLAHKIKEFANNGLQVNLAISLHAPNNEVRTSIMRINRSFPI 240
Query: 248 EKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQ--VVVNLIPFNPIG 305
EKLM A+ EY + + ++I EYIML+ VND +HA QL LL+ + VNLIP+NP+
Sbjct: 241 EKLMEAVDEYLEKTNRRITFEYIMLNQVNDRPEHAQQLADLLKDKKKLAYVNLIPYNPVS 300
Query: 306 SVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDKISAK 361
Q+ S V F +L+ + + +RK+ G DI ACGQL K AK
Sbjct: 301 EHDQYSRSPKADVLRFYDVLKKN-GVNCVIRKEHGTDIDAACGQLRSKQMKKTVAK 355
>gi|306832938|ref|ZP_07466070.1| cfr family radical SAM enzyme [Streptococcus bovis ATCC 700338]
gi|304424837|gb|EFM27971.1| cfr family radical SAM enzyme [Streptococcus bovis ATCC 700338]
Length = 368
Score = 201 bits (511), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 120/360 (33%), Positives = 194/360 (53%), Gaps = 34/360 (9%)
Query: 22 GIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKF--KPLTSTLHSVVDSSDDVT 79
G K+ IW ++ ++E ++ ++L F PL VV + D T
Sbjct: 28 GEKKFRATQIWDWLYRKRVQSFEEMTNISKDFIAVLNENFCVNPLK---QRVVQEASDGT 84
Query: 80 TKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTM 139
K L +L +G +E V+MR L ++C++SQVGC +GC+FCA+G +
Sbjct: 85 VKYLFELPDGMLIETVLMRQHYGL--------------SVCVTSQVGCNIGCSFCASGLL 130
Query: 140 GFKSNLSSGEIVEQLVHASRLSNIR-------NVVFMGMGEPLNNYAALVEAVRIMT--- 189
+ +L+SGEI Q++ + + R +VV MG+GEP +NY ++ +R +
Sbjct: 131 KKQRDLTSGEITSQIMMVQKYFDERGQDERVSHVVVMGIGEPFDNYNNVLRFLRTINDDN 190
Query: 190 GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEK 249
GL + + ITVST G+ H I F + +NLAVSLHAP ++R QIM R+FPLEK
Sbjct: 191 GLA--IGARHITVSTSGLAHKIRDFAHESLQVNLAVSLHAPNNELRSQIMRVNRSFPLEK 248
Query: 250 LMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVV--VNLIPFNPIGSV 307
L A++ Y + + +++ EYIML+ VND ++A +L L + + + +NLIP+NP+
Sbjct: 249 LFAAIEYYVETTNRRVTFEYIMLNEVNDFPENAQELADLTKKIRKLSYINLIPYNPVSEH 308
Query: 308 SQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDKISAKSTPPVT 367
Q+ SS ++V++F +L+ + + VR++ G DI ACGQL N + K+ T
Sbjct: 309 DQYSRSSKERVAAFYDVLKKN-GVNCVVRQEHGTDIDAACGQLRSNTMKRDRQKAVAEKT 367
>gi|433446077|ref|ZP_20410208.1| ribosomal RNA large subunit methyltransferase N [Anoxybacillus
flavithermus TNO-09.006]
gi|432000822|gb|ELK21714.1| ribosomal RNA large subunit methyltransferase N [Anoxybacillus
flavithermus TNO-09.006]
Length = 349
Score = 201 bits (511), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 114/346 (32%), Positives = 199/346 (57%), Gaps = 29/346 (8%)
Query: 14 IRAEFEKAGIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHSVVD 73
+++ E+ G K I++++ + +++ ++P A L F + +TL ++V
Sbjct: 13 LQSWIEQQGEKPFRATQIFEWLYKKRVTSFEDMTNIPKALRERLDEHF--VITTLKTLVQ 70
Query: 74 -SSDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCN 132
+S D T K L +L +G +E V+MR+D +++C+++QVGC++GC
Sbjct: 71 QTSKDGTMKFLFELHDGYSIETVLMRHDYG--------------NSICVTTQVGCRIGCT 116
Query: 133 FCATGTMGFKSNLSSGEIVEQLVHASRL-----SNIRNVVFMGMGEPLNNYAALVEAVRI 187
FCA+ G K NL +GEIV Q+V + + ++V MG+GEP +NY L++ ++I
Sbjct: 117 FCASTLGGLKRNLQAGEIVAQVVKVQKALDETNERVSSIVVMGIGEPFDNYDELIKFLKI 176
Query: 188 MT---GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARA 244
+ GL + + ITVST GI+ I KF + +N A+SLHAP ++R ++MP RA
Sbjct: 177 VNHPKGL--HIGARHITVSTSGIIPKIYKFADENMQINFAISLHAPNTELRSKLMPINRA 234
Query: 245 FPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPI 304
+ L +LM A++ Y + + +++ EY + GVND+ +HA +L +L++ + VNLIP N +
Sbjct: 235 YKLPELMEAVRYYIEKTGRRVTFEYGLFGGVNDQIEHAEELAELIKGLKCHVNLIPVNYV 294
Query: 305 GSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 350
+ RT +++ +F+K L+ + I T+R++ G DI ACGQL
Sbjct: 295 PERNYVRTPR-EQIFAFEKTLK-KHGINVTIRREQGHDIDAACGQL 338
>gi|386361418|ref|YP_006059663.1| 2-oxoglutarate synthase subunit, 2-oxoacid-ferredoxin
oxidoreductase subunit CD [Thermus thermophilus JL-18]
gi|383510445|gb|AFH39877.1| 23S rRNA m2A2503 methyltransferase [Thermus thermophilus JL-18]
Length = 355
Score = 201 bits (511), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 118/329 (35%), Positives = 178/329 (54%), Gaps = 23/329 (6%)
Query: 42 EWDEFPSLPSAAYSLLRSKFKPLTSTLHSVVDSSDDVTTKLLVKLQNGGFVEAVIMRYDS 101
++ E LP A L +++ +L S D + K L L +G EAV M Y++
Sbjct: 39 DFSEMTDLPKALREALAQEWRLSEFSLVQAFPSQDG-SVKYLFTLLDGKKTEAVYMPYEN 97
Query: 102 SLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLV---HAS 158
R T+C+S+ VGC GC FCATG +GF NL++ EI++QL+ +
Sbjct: 98 --------------RKTVCLSTMVGCPAGCTFCATGALGFGRNLTAAEILDQLLTIAYHQ 143
Query: 159 RLS--NIRNVVFMGMGEPLNNYAALVEAVRIMT-GLPFQVSPKRITVSTVGIVHAINKFH 215
LS IRNVV MGMGEPL N +++AVRIM +SP+R+T+STVGI I +
Sbjct: 144 GLSPREIRNVVLMGMGEPLLNLRNVLKAVRIMLHKKALALSPRRVTLSTVGIPKGIYRLA 203
Query: 216 SDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGV 275
+ G+ LA+SLHAP + R I+P A +P+ ++M A++ Y +++++ EY +L GV
Sbjct: 204 EEDLGVRLALSLHAPDDETRKAIIPTAHRYPIAEIMEAVRHYYAKTKRRVTFEYTLLKGV 263
Query: 276 NDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTV 335
ND A L KLL+ VNLIPFNP T ++ +++ R + ++
Sbjct: 264 NDHLWQARLLAKLLKGLSAHVNLIPFNPWEGAPVAGTPRAAILAFAEELKR--LGVPVSI 321
Query: 336 RKQMGQDISGACGQLVVNLPDKISAKSTP 364
R GQD+ ACGQL + +P ++ + P
Sbjct: 322 RWSRGQDVGAACGQLALKVPKPLTFRPLP 350
>gi|313203965|ref|YP_004042622.1| 23S rRNA m(2)a-2503 methyltransferase [Paludibacter propionicigenes
WB4]
gi|312443281|gb|ADQ79637.1| 23S rRNA m(2)A-2503 methyltransferase [Paludibacter propionicigenes
WB4]
Length = 345
Score = 201 bits (511), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 109/308 (35%), Positives = 183/308 (59%), Gaps = 19/308 (6%)
Query: 44 DEFPSLPSAAYSLLRSKFKPLTSTLHSVVDSSDDVTTKLLVKLQNGGFVEAVIMRYDSSL 103
DE ++ + +LL +K+ S V+S+D T K L + + G F+E+V +
Sbjct: 44 DEMTNISAKNRALLAAKYDVGRSLPVQAVESTDG-TKKYLFRTEGGHFIESVYI------ 96
Query: 104 GKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSNI 163
P R+TLC+SSQVGCKMGC FC TG F + L++ EI+ Q++ +
Sbjct: 97 --------PDEDRATLCVSSQVGCKMGCMFCMTGKQSFTAQLTTTEILNQIMSIPEAETL 148
Query: 164 RNVVFMGMGEPLNNYAALVEAVRIMTG-LPFQVSPKRITVSTVGIVHAINKFHSDLPGLN 222
N+VFMGMGEP +N A++ ++ I+T + SP+RITVS++G++ + F + +
Sbjct: 149 TNLVFMGMGEPFDNTLAMLRSLEILTADYGYGWSPRRITVSSIGLIPGMKVF-LERSNCH 207
Query: 223 LAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHA 282
LA+SLH+P + R ++MP ++FP+ K+++ ++++ + Q+++ EYI+ DGVND +HA
Sbjct: 208 LAISLHSPFSEERLKLMPIEKSFPIAKVLDEIRKHDFSHQRRVSFEYILFDGVNDSMRHA 267
Query: 283 HQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQD 342
+L KLL VNLI F+ I + ++S+ +K++ F+ L S + +T+R+ G+D
Sbjct: 268 VELVKLLRGIDCRVNLIRFHAIPGI-DLKSSTPEKMTFFRDYL-TSNGVTSTIRRSRGED 325
Query: 343 ISGACGQL 350
I ACG L
Sbjct: 326 IFAACGML 333
>gi|398782156|ref|ZP_10545974.1| ribosomal RNA large subunit methyltransferase N [Streptomyces
auratus AGR0001]
gi|396996893|gb|EJJ07872.1| ribosomal RNA large subunit methyltransferase N [Streptomyces
auratus AGR0001]
Length = 368
Score = 201 bits (511), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 119/324 (36%), Positives = 176/324 (54%), Gaps = 33/324 (10%)
Query: 45 EFPSLPSAAYSLLRSKFKPLTSTLHSVVDSSDDVTTKLLVKLQNGGFVEAVIMRYDSSLG 104
++ +P+AA L + P + + DD T K L KL +G VE+V+MRY
Sbjct: 61 QWTDIPAAAREKLAGELLPELMKVVRHISCDDDTTRKTLWKLHDGTLVESVLMRYPD--- 117
Query: 105 KYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRL---- 160
R T+CISSQ GC M C FCATG G NLS+ EIV Q+V R
Sbjct: 118 -----------RVTMCISSQAGCGMNCPFCATGQAGLDRNLSTAEIVHQIVDGMRALRDG 166
Query: 161 ------SNIRNVVFMGMGEPLNNYAALVEAVRIMT-----GLPFQVSPKRITVSTVGIVH 209
+ + N+VFMGMGEPL NY +V ++R +T GL +S + ITVSTVG+V
Sbjct: 167 EVPGGAARLSNIVFMGMGEPLANYKRVVGSIRRLTDPEPDGL--GLSQRGITVSTVGLVP 224
Query: 210 AINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEY 269
A+ +F + LAVSLHAP ++R ++P + + ++++A EY + S ++I IEY
Sbjct: 225 AMLRFADEGFKCRLAVSLHAPDDELRDTLVPVNTRWKVREVLDAAWEYAEKSGRRISIEY 284
Query: 270 IMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSY 329
++ +ND+ LG+LL+ +V VNLIP NP + +D+++ + I ++
Sbjct: 285 ALIRDINDQAWRGDLLGRLLKGKRVHVNLIPLNPTPGSKWTASRPEDELAFVRAI--EAH 342
Query: 330 NIRTTVRKQMGQDISGACGQLVVN 353
+ TVR GQ+I GACGQL +
Sbjct: 343 GVPVTVRDTRGQEIDGACGQLAAS 366
>gi|192359958|ref|YP_001981965.1| radical SAM enzyme, Cfr family [Cellvibrio japonicus Ueda107]
gi|190686123|gb|ACE83801.1| radical SAM enzyme, Cfr family [Cellvibrio japonicus Ueda107]
Length = 402
Score = 201 bits (511), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 123/354 (34%), Positives = 196/354 (55%), Gaps = 31/354 (8%)
Query: 16 AEFEKAGIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHSVVDSS 75
A FE G K+ + K++ + +D+ ++ A + L+ + + +DS+
Sbjct: 45 AFFESIGEKKFRAIQVMKWIHQLGADNFDDMSNVSKALRAKLKDCAEIYAPEVVRQLDSA 104
Query: 76 DDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCA 135
D T K L+++ G VE V + P G R TLC+SSQVGC + C+FCA
Sbjct: 105 DG-TRKFLIRVAGGNVVETVFI--------------PDGDRGTLCVSSQVGCSLDCSFCA 149
Query: 136 TGTMGFKSNLSSGEIVEQL---------VHASRLSNIRNVVFMGMGEPLNNYAALVEAVR 186
TG GF +L++ EI+ Q+ + A+ + NVV MGMGEPL N+ +V+A+
Sbjct: 150 TGKQGFNRDLTAAEIIGQVWIAAKSFGQLQANGPRTVTNVVMMGMGEPLLNFDNVVDAMN 209
Query: 187 IMT-GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAF 245
+M + +S +R+T+ST G+V +++ S LA+SLHAP ++R +++P R +
Sbjct: 210 LMMHDNAYGISKRRVTLSTSGVVPQLDRL-SQYTDACLAISLHAPNDELRNELVPINRKY 268
Query: 246 PLEKLMNALKEYQK---NSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFN 302
P+ L+++ + Y + ++ +KI IEY ++D VND QHA QL +LL V +NLIPFN
Sbjct: 269 PIAMLLDSARRYIQSMPDTHRKITIEYTLIDQVNDRPQHAQQLAELLRDVPVKINLIPFN 328
Query: 303 PIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPD 356
P ++S ++ S++ + FQ IL I TTVR G DI ACGQL ++ D
Sbjct: 329 PF-NLSNYKRVSNNALRKFQDILMQEGYI-TTVRTTRGDDIDAACGQLAGSVND 380
>gi|320353873|ref|YP_004195212.1| 23S rRNA m(2)A-2503 methyltransferase [Desulfobulbus propionicus
DSM 2032]
gi|320122375|gb|ADW17921.1| 23S rRNA m(2)A-2503 methyltransferase [Desulfobulbus propionicus
DSM 2032]
Length = 371
Score = 201 bits (511), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 116/292 (39%), Positives = 172/292 (58%), Gaps = 34/292 (11%)
Query: 71 VVDSSDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMG 130
+V+ S D K +L +G +E+V++ P R+TLC+SSQVGC MG
Sbjct: 74 MVECSRDGAVKFAFRLDDGQIIESVLI--------------PEEDRNTLCVSSQVGCAMG 119
Query: 131 CNFCATGTMGFKSNLSSGEIVEQ--------LVHASRLSNIRNVVFMGMGEPLNNYAALV 182
C+FC TG MGF NL++ EIV Q L H L + N+VFMGMGEPL N+ L+
Sbjct: 120 CSFCLTGAMGFCRNLTTAEIVNQVCAVRDWTLAHDKGL--LTNIVFMGMGEPLANFDNLL 177
Query: 183 EAVRIMT---GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIM 239
+A+ I+T GL F S +RITVST G+V + + + +NLAVSLHA +VR ++M
Sbjct: 178 DAIAILTEQRGLDF--SNRRITVSTCGLVPQMRRLGEE-TDVNLAVSLHAVNDEVRSRLM 234
Query: 240 PAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLI 299
P + +P+ +L+ + Y++ +++I EY +L G+ND + A QL +LL +NL+
Sbjct: 235 PVNKRYPIAELIEVCRTYRQKRRKRIMFEYTLLQGINDSDADAVQLAELLREVPCKINLL 294
Query: 300 PFNPIGSVSQFRTSSDDKVSSFQKILRG-SYNIRTTVRKQMGQDISGACGQL 350
NP GS S +++ +++V FQ+ILR Y + +R G+DIS ACGQL
Sbjct: 295 AVNP-GSGSAYQSPGEERVLCFQRILRDRGYTV--FIRTSRGEDISAACGQL 343
>gi|449898426|ref|ZP_21790598.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
mutans R221]
gi|449935391|ref|ZP_21803352.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
mutans 2ST1]
gi|449991945|ref|ZP_21822121.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
mutans NVAB]
gi|450117329|ref|ZP_21864935.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
mutans ST1]
gi|450152999|ref|ZP_21876962.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
mutans 21]
gi|449166677|gb|EMB69604.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
mutans 2ST1]
gi|449180416|gb|EMB82574.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
mutans NVAB]
gi|449226328|gb|EMC25870.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
mutans ST1]
gi|449239470|gb|EMC38192.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
mutans 21]
gi|449259760|gb|EMC57279.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
mutans R221]
Length = 361
Score = 201 bits (511), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 120/356 (33%), Positives = 192/356 (53%), Gaps = 34/356 (9%)
Query: 22 GIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKF--KPLTSTLHSVVDSSDDVT 79
G K+ IW ++ ++E +L +LL F PL +V S D T
Sbjct: 21 GEKKFRATQIWDWLYRKRVQSFEEMTNLSKDFIALLNENFLVNPLK---QRIVQESADGT 77
Query: 80 TKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTM 139
K L +L +G +E V+MR L ++C+++QVGC +GC FCA+G +
Sbjct: 78 VKYLFELPDGMLIETVLMRQHYGL--------------SVCVTTQVGCNIGCTFCASGLI 123
Query: 140 GFKSNLSSGEIVEQLVHASRL-------SNIRNVVFMGMGEPLNNYAALVEAVRIMT--- 189
+ +L++GEI Q++ + I +VV MG+GEP +NY +++ +R +
Sbjct: 124 KKQRDLNNGEITAQIMLVQKYFDERGQGERISHVVVMGIGEPFDNYDNVLKFLRTINDDN 183
Query: 190 GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEK 249
GL + + ITVST G+ H I F ++ +NLAVSLHAP ++R IM R+FPLEK
Sbjct: 184 GLA--IGARHITVSTSGLAHKIRDFANERVQVNLAVSLHAPNNELRSSIMRINRSFPLEK 241
Query: 250 LMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVV--VNLIPFNPIGSV 307
L A++ Y + + +++ EYIML+GVND ++A +L L + + + VNLIP+NP+
Sbjct: 242 LFAAIEYYIETTNRRVTFEYIMLNGVNDNPENAQELADLTKKIRKLSYVNLIPYNPVTEH 301
Query: 308 SQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDKISAKST 363
Q+ S ++V +F +L+ + + VR++ G DI ACGQL N + K+T
Sbjct: 302 DQYSRSPKERVDAFYDVLKKN-GVNCVVRQEHGTDIDAACGQLRSNTMKRDREKAT 356
>gi|304311805|ref|YP_003811403.1| hypothetical protein HDN1F_21750 [gamma proteobacterium HdN1]
gi|301797538|emb|CBL45758.1| Conserved hypothetical protein [gamma proteobacterium HdN1]
Length = 410
Score = 201 bits (511), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 124/329 (37%), Positives = 187/329 (56%), Gaps = 33/329 (10%)
Query: 44 DEFPSLPSAAYSLLRSKFKPLT---STLHSVVDSSDDVTTKLLVKLQNGGFVEAVIMRYD 100
D+F + + + L R K K + + S + S D T K +++L NG VE V +
Sbjct: 45 DDFDQMTNVSRDL-REKLKAVAVIPAPAISYENISKDGTRKWVIRLDNGNAVETVFI--- 100
Query: 101 SSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASR- 159
P G R TLC+SSQVGC + C+FC+TG GF+ +L++ EI+ QL A+R
Sbjct: 101 -----------PDGNRGTLCVSSQVGCSLDCSFCSTGKQGFQRDLTAAEIIAQLWVANRS 149
Query: 160 --------LSNIRNVVFMGMGEPLNNYAALVEAVRIMT-GLPFQVSPKRITVSTVGIVHA 210
NI NVV MGMGEPL N +V A+ IM L + V+ KR+T+ST G+V
Sbjct: 150 FGVPDNKGHRNITNVVMMGMGEPLLNLDNVVSAMEIMKDDLGYGVARKRVTLSTSGVVPK 209
Query: 211 INKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEY--QKNSQQKIFIE 268
+ + D ++LAVSLHAP +R ++MP R +PL +L+ A + Y + N +++ +E
Sbjct: 210 MYELF-DRIDVSLAVSLHAPNDTLRDELMPINRKYPLAELLKACRYYVDKYNDGRRVTME 268
Query: 269 YIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGS 328
Y++LDG+ND HA +L +LL +NLIPFNP + ++ + +V +FQ++L +
Sbjct: 269 YVLLDGINDTFAHAAELVELLRDVPSKINLIPFNPFPH-APYKRPNGYRVKAFQEVLLKA 327
Query: 329 YNIRTTVRKQMGQDISGACGQLVVNLPDK 357
+ TT+R G DI ACGQLV + D+
Sbjct: 328 DYV-TTIRTTRGDDIDAACGQLVGQVQDR 355
>gi|326776285|ref|ZP_08235550.1| radical SAM enzyme, Cfr family [Streptomyces griseus XylebKG-1]
gi|326656618|gb|EGE41464.1| radical SAM enzyme, Cfr family [Streptomyces griseus XylebKG-1]
Length = 368
Score = 201 bits (511), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 119/323 (36%), Positives = 174/323 (53%), Gaps = 33/323 (10%)
Query: 45 EFPSLPSAAYSLLRSKFKPLTSTLHSVVDSSDDVTTKLLVKLQNGGFVEAVIMRYDSSLG 104
E+ ++P+ + L P ++ + DD T K L KL +G VE+V+MRY
Sbjct: 61 EWTNIPAGSREKLAEALFPDLMSVMRHISCDDDTTRKTLWKLHDGTLVESVLMRYPD--- 117
Query: 105 KYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRL---- 160
R T+CISSQ GC M C FCATG G NLS+ EIV Q+V R
Sbjct: 118 -----------RVTMCISSQAGCGMNCPFCATGQAGLDRNLSTAEIVHQIVDGMRALRDG 166
Query: 161 ------SNIRNVVFMGMGEPLNNYAALVEAVRIMT-----GLPFQVSPKRITVSTVGIVH 209
+ + N+VFMGMGEPL NY +V A+R +T GL +S + ITVSTVG+V
Sbjct: 167 EVPGGPARLSNIVFMGMGEPLANYNRVVGAIRRLTDPEPDGL--GLSQRGITVSTVGLVP 224
Query: 210 AINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEY 269
A+ +F + LAVSLHAP ++R ++P + + ++++A EY S ++I IEY
Sbjct: 225 AMLRFADEGFKCRLAVSLHAPDDELRDTLVPVNTRWNVREVLDAAWEYADKSGRRISIEY 284
Query: 270 IMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSY 329
++ +ND+ +LG+LL+ +V VNLIP NP + +D+ + + I ++
Sbjct: 285 ALIRDINDQAWRGDRLGRLLKGKRVHVNLIPLNPTPGSKWTASRPEDEKAFVEAI--AAH 342
Query: 330 NIRTTVRKQMGQDISGACGQLVV 352
+ TVR GQ+I GACGQL
Sbjct: 343 GVPVTVRDTRGQEIDGACGQLAA 365
>gi|344995748|ref|YP_004798091.1| ribosomal RNA large subunit methyltransferase N
[Caldicellulosiruptor lactoaceticus 6A]
gi|343963967|gb|AEM73114.1| Ribosomal RNA large subunit methyltransferase N
[Caldicellulosiruptor lactoaceticus 6A]
Length = 344
Score = 201 bits (511), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 121/337 (35%), Positives = 192/337 (56%), Gaps = 23/337 (6%)
Query: 18 FEKAGIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHSVVDSSDD 77
E G K +++++ + + +F +LP + +F L ++LH + SD
Sbjct: 17 LESVGEKPFRATQVFEWLYKKNATDVMQFTNLPLELRKKIEDEF--LINSLHILKYQSDG 74
Query: 78 VTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATG 137
+ K L +L + VE+V + Y R G + +C+S+QVGCKM C FCA+
Sbjct: 75 ESIKFLFELCDKNGVESVFLPY-----------RYG---NAICVSTQVGCKMNCRFCAST 120
Query: 138 TMGFKSNLSSGEIVEQLVHASRLS--NIRNVVFMGMGEPLNNYAALVEAVRIMTGLPFQ- 194
GF NLS GE+V+Q+++A + I NVV MG GEP +N + + + I+ +
Sbjct: 121 IGGFVRNLSPGEMVDQIINAENFTGKRITNVVLMGSGEPFDNIENVFKFIEIINSKEGKN 180
Query: 195 VSPKRITVSTVGIVHAINKFHSDLPG-LNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNA 253
+ + IT+STVGIV I + D P +NLA+SLHAP +R +++P + +P+E +M A
Sbjct: 181 IGARHITISTVGIVEGIYRL-CDFPKQVNLAISLHAPNNSLRDKLVPINKKYPVEDIMKA 239
Query: 254 LKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTS 313
+ Y K + +++ EY ++DGVND + A +LGK+L+ V VNLIP NP+ FR
Sbjct: 240 VDYYIKRTNRRVTFEYALIDGVNDSIECAQELGKMLKGKLVHVNLIPVNPVEE-KGFRRP 298
Query: 314 SDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 350
S +K+ +F + LR SY I+ T+R+++G IS ACGQL
Sbjct: 299 SKEKIKAFFETLR-SYQIQVTIRRELGSSISAACGQL 334
>gi|256762921|ref|ZP_05503501.1| conserved hypothetical protein [Enterococcus faecalis T3]
gi|256684172|gb|EEU23867.1| conserved hypothetical protein [Enterococcus faecalis T3]
Length = 357
Score = 201 bits (511), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 119/345 (34%), Positives = 184/345 (53%), Gaps = 30/345 (8%)
Query: 18 FEKAGIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHSVVDSSDD 77
F G K+ +W+++ + E ++ + LL F L +V + D
Sbjct: 18 FLAHGEKKFRATQVWEWLYTKRVTSFSEMSNISKSLMILLEENF-SLNPLKQVIVQEAQD 76
Query: 78 VTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATG 137
T K L +L + +E V+MR + L ++C+++QVGC +GC FCA+G
Sbjct: 77 GTVKYLFELPDKNMIETVLMRQEYGL--------------SVCVTTQVGCNIGCTFCASG 122
Query: 138 TMGFKSNLSSGEIVEQLVHASRLSNIR-------NVVFMGMGEPLNNYAALVEAVRIMT- 189
+ + +L++GEIV Q++ + R +VV MG+GEP +NYA ++ +R +
Sbjct: 123 LLKKQRDLTAGEIVAQIMWVQHYFDERGLDERVSHVVVMGIGEPFDNYANVMNFLRTIND 182
Query: 190 --GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPL 247
GL + + ITVST G+ I +F +NLA+SLHAP +VR IM R+FP+
Sbjct: 183 DKGLA--IGARHITVSTSGLAPKIREFADSGLQVNLAISLHAPNNEVRTSIMRINRSFPI 240
Query: 248 EKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVV--VNLIPFNPIG 305
EKLM A+ EY + + +++ EYIML VND +HA QL LL + + VNLIP+NP+
Sbjct: 241 EKLMAAIDEYIEKTNRRVTFEYIMLSQVNDRPEHAQQLADLLRNKKKLSYVNLIPYNPVS 300
Query: 306 SVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 350
Q+ SS + V F +L+ + I +RK+ G DI ACGQL
Sbjct: 301 EHDQYSRSSKEAVLKFYDVLKKN-GINCVIRKEHGTDIDAACGQL 344
>gi|254479559|ref|ZP_05092874.1| radical SAM enzyme, Cfr family [Carboxydibrachium pacificum DSM
12653]
gi|214034497|gb|EEB75256.1| radical SAM enzyme, Cfr family [Carboxydibrachium pacificum DSM
12653]
Length = 336
Score = 201 bits (511), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 115/328 (35%), Positives = 188/328 (57%), Gaps = 30/328 (9%)
Query: 31 IWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLT-----STLHSVVDSSDDVTTKLLVK 85
++K++ + ++D + LR+K K + + V DD T K L
Sbjct: 23 LYKWIYDKRVTDFDLMTDISKN----LRAKLKEIAYISELKIIERRVSQIDD-TVKYLFL 77
Query: 86 LQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNL 145
L++ +E V ++Y +T C+S+QVGC M C FCA+ G +L
Sbjct: 78 LEDKNIIEGVAIKYKFG--------------NTACVSTQVGCNMKCKFCASAIGGKVRDL 123
Query: 146 SSGEIVEQLVHA-SRLSNIRNVVFMGMGEPLNNYAALVEAVRIMTGLPF--QVSPKRITV 202
+ E+V+Q++ S I N+V MG GEP +NY +++ ++I+ P+ ++ + IT+
Sbjct: 124 KASEMVDQVMAIDSDYGKISNIVLMGSGEPFDNYDEVMKFIKIVNN-PYGLKIGKRHITI 182
Query: 203 STVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQ 262
STVGIV I +F + +NL++SLHAP ++R ++MP RA+PLE+LM A + Y + +
Sbjct: 183 STVGIVPKIYQFADEELQVNLSISLHAPNNELRNELMPINRAYPLEELMKACRYYIEKTN 242
Query: 263 QKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQ 322
++I EY ++DGVND+++HA+QL LL+ VNLIP N + + FR S+++KV F+
Sbjct: 243 RRITFEYALIDGVNDKKEHAYQLVDLLKGMLCHVNLIPINYVKEIG-FRKSNNEKVMMFK 301
Query: 323 KILRGSYNIRTTVRKQMGQDISGACGQL 350
KI+ + I TVR+++G DI ACGQL
Sbjct: 302 KIIENA-GITCTVRRELGSDIEAACGQL 328
>gi|449928865|ref|ZP_21801372.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
mutans 3SN1]
gi|449164937|gb|EMB67971.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
mutans 3SN1]
Length = 361
Score = 201 bits (511), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 119/354 (33%), Positives = 192/354 (54%), Gaps = 30/354 (8%)
Query: 22 GIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHSVVDSSDDVTTK 81
G K+ IW ++ ++E +L +LL F +T +V S D T K
Sbjct: 21 GEKKFRATQIWDWLYRKRVQSFEEMTNLSKDFIALLNENF-LVTPLKQRIVQESADGTVK 79
Query: 82 LLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGF 141
L +L +G +E V+MR L ++C+++QVGC +GC FCA+G +
Sbjct: 80 YLFELPDGMLIETVLMRQHYGL--------------SVCVTTQVGCNIGCTFCASGLIKK 125
Query: 142 KSNLSSGEIVEQLVHASRL-------SNIRNVVFMGMGEPLNNYAALVEAVRIMT---GL 191
+ +L++GEI Q++ + I +VV MG+GEP +NY +++ +R + GL
Sbjct: 126 QRDLNNGEITAQIMLVQKYFDERGQGERISHVVVMGIGEPFDNYDNVLKFLRTINDDNGL 185
Query: 192 PFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLM 251
+ + ITVST G+ H I F ++ +NLAVSLHAP ++R IM R+FPLEKL
Sbjct: 186 A--IGARHITVSTSGLAHKIRDFANEGVQVNLAVSLHAPNNELRSSIMRINRSFPLEKLF 243
Query: 252 NALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVV--VNLIPFNPIGSVSQ 309
A++ Y + + +++ EYIML+GVND ++A +L L + + + VNLIP+NP+ Q
Sbjct: 244 AAIEYYIETTNRRVTFEYIMLNGVNDNPENAQELADLTKKIRKLSYVNLIPYNPVTEHDQ 303
Query: 310 FRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDKISAKST 363
+ S ++V +F +L+ + + VR++ G DI ACGQL N + K+T
Sbjct: 304 YSRSPKERVDAFYDVLKKN-GVNCVVRQEHGTDIDAACGQLRSNTMKRDREKAT 356
>gi|71065245|ref|YP_263972.1| hypothetical protein Psyc_0679 [Psychrobacter arcticus 273-4]
gi|123748144|sp|Q4FTX0.1|RLMN_PSYA2 RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|71038230|gb|AAZ18538.1| 23S rRNA m(2)A-2503 methyltransferase [Psychrobacter arcticus
273-4]
Length = 409
Score = 201 bits (511), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 119/306 (38%), Positives = 178/306 (58%), Gaps = 35/306 (11%)
Query: 75 SDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFC 134
SDD T K + ++ G VE V++ D S K NG R TLCISSQVGC + C+FC
Sbjct: 99 SDDGTRKWVFEVTGGSLVETVLIPADDS--KLNG-------RKTLCISSQVGCALDCSFC 149
Query: 135 ATGTMGFKSNLSSGEIVEQL--VHASRLS----------------NIRNVVFMGMGEPLN 176
+TG GF+ +L++ EI+ QL +AS +S N+ NVV MGMGEPL
Sbjct: 150 STGKQGFERDLTAAEILGQLWVANASYMSDENDSLENIDHSLWENNVTNVVMMGMGEPLL 209
Query: 177 NYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVR 235
NY +V ++ +M + + +S +R+T+ST G+V + + +L + LA+SLHAP ++R
Sbjct: 210 NYRPVVSSMELMLSDHAYGLSKRRVTLSTSGVVPKMYELAKEL-DVALAISLHAPNDELR 268
Query: 236 CQIMPAARAFPLEKLMNALKEY----QKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLET 291
+++P + +PLE+LM A + Y ++ + IEY+MLDGVND +HA QL LL
Sbjct: 269 NELVPINKKYPLEQLMAAARNYVFDVNPRHKKHVTIEYVMLDGVNDSNEHAEQLVALLGD 328
Query: 292 FQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLV 351
+NLIPFNP + + SS++++ +F IL + T+R+ G DI ACGQLV
Sbjct: 329 LPSKINLIPFNPFPH-ANYDKSSNNRIHAFSNILSEA-GFVCTIRQTRGDDIDAACGQLV 386
Query: 352 VNLPDK 357
+ D+
Sbjct: 387 GQVADR 392
>gi|450041242|ref|ZP_21837296.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
mutans T4]
gi|449197971|gb|EMB99107.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
mutans T4]
Length = 361
Score = 201 bits (511), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 120/356 (33%), Positives = 192/356 (53%), Gaps = 34/356 (9%)
Query: 22 GIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKF--KPLTSTLHSVVDSSDDVT 79
G K+ IW ++ ++E +L +LL F PL +V S D T
Sbjct: 21 GEKKFRATQIWDWLYRKRVQSFEEMTNLSKDFIALLNENFLVNPLK---QRIVQESADGT 77
Query: 80 TKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTM 139
K L +L +G +E V+MR L ++C+++QVGC +GC FCA+G +
Sbjct: 78 VKYLFELPDGMLIETVLMRQHYGL--------------SVCVTTQVGCNIGCTFCASGLI 123
Query: 140 GFKSNLSSGEIVEQLVHASRL-------SNIRNVVFMGMGEPLNNYAALVEAVRIMT--- 189
+ +L++GEI Q++ + I +VV MG+GEP +NY +++ +R +
Sbjct: 124 KKQRDLNNGEITAQIMLVQKYFDERGQGERISHVVVMGIGEPFDNYDNVLKFLRTINDDN 183
Query: 190 GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEK 249
GL + + ITVST G+ H I F ++ +NLAVSLHAP ++R IM R+FPLEK
Sbjct: 184 GLA--IGARHITVSTSGLAHKIRDFANEKVQVNLAVSLHAPNNELRSSIMRINRSFPLEK 241
Query: 250 LMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVV--VNLIPFNPIGSV 307
L A++ Y + + +++ EYIML+GVND ++A +L L + + + VNLIP+NP+
Sbjct: 242 LFAAIEYYIETTNRRVTFEYIMLNGVNDNPENAQELADLTKKIRKLSYVNLIPYNPVTEH 301
Query: 308 SQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDKISAKST 363
Q+ S ++V +F +L+ + + VR++ G DI ACGQL N + K+T
Sbjct: 302 DQYSRSPKERVDAFYDVLKKN-GVNCVVRQEHGTDIDAACGQLRSNTMKRDREKAT 356
>gi|20807945|ref|NP_623116.1| ribosomal RNA large subunit methyltransferase N [Thermoanaerobacter
tengcongensis MB4]
gi|81590646|sp|Q8R9T4.1|RLMN_THETN RecName: Full=Probable dual-specificity RNA methyltransferase RlmN;
AltName: Full=23S rRNA
(adenine(2503)-C(2))-methyltransferase; AltName:
Full=23S rRNA m2A2503 methyltransferase; AltName:
Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=tRNA (adenine(37)-C(2))-methyltransferase;
AltName: Full=tRNA m2A37 methyltransferase
gi|20516515|gb|AAM24720.1| predicted Fe-S-cluster redox enzyme [Thermoanaerobacter
tengcongensis MB4]
Length = 342
Score = 201 bits (511), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 115/328 (35%), Positives = 188/328 (57%), Gaps = 30/328 (9%)
Query: 31 IWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLT-----STLHSVVDSSDDVTTKLLVK 85
++K++ + ++D + LR+K K + + V DD T K L
Sbjct: 29 LYKWIYDKRVTDFDLMTDISKN----LRAKLKEIAYISELKIIERRVSQIDD-TVKYLFL 83
Query: 86 LQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNL 145
L++ +E V ++Y +T C+S+QVGC M C FCA+ G +L
Sbjct: 84 LEDKNIIEGVAIKYKFG--------------NTACVSTQVGCNMKCKFCASAIGGKVRDL 129
Query: 146 SSGEIVEQLVHA-SRLSNIRNVVFMGMGEPLNNYAALVEAVRIMTGLPF--QVSPKRITV 202
+ E+V+Q++ S I N+V MG GEP +NY +++ ++I+ P+ ++ + IT+
Sbjct: 130 KASEMVDQVMAIDSDYGKISNIVLMGSGEPFDNYDEVMKFIKIVNN-PYGLKIGKRHITI 188
Query: 203 STVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQ 262
STVGIV I +F + +NL++SLHAP ++R ++MP RA+PLE+LM A + Y + +
Sbjct: 189 STVGIVPKIYQFADEELQVNLSISLHAPNNELRNELMPINRAYPLEELMKACRYYIEKTN 248
Query: 263 QKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQ 322
++I EY ++DGVND+++HA+QL LL+ VNLIP N + + FR S+++KV F+
Sbjct: 249 RRITFEYALIDGVNDKKEHAYQLVDLLKGMLCHVNLIPINYVKEIG-FRKSNNEKVMMFK 307
Query: 323 KILRGSYNIRTTVRKQMGQDISGACGQL 350
KI+ + I TVR+++G DI ACGQL
Sbjct: 308 KIIENA-GITCTVRRELGSDIEAACGQL 334
>gi|335045301|ref|ZP_08538324.1| 23S rRNA m2A2503 methyltransferase [Oribacterium sp. oral taxon 108
str. F0425]
gi|333759087|gb|EGL36644.1| 23S rRNA m2A2503 methyltransferase [Oribacterium sp. oral taxon 108
str. F0425]
Length = 350
Score = 201 bits (511), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 127/343 (37%), Positives = 185/343 (53%), Gaps = 28/343 (8%)
Query: 20 KAGIKQHFIPL-----IWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHSVVDS 74
+A + +H P I+++V E ++ E +L LR +F L+ S
Sbjct: 13 EAWVLEHHFPRYRAEQIFRWVQEKDVTDFSEMENLRKDLRQALREEFSLALPELYRRYTS 72
Query: 75 SDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFC 134
D T K L L +G +EAV M Y ++G +T CIS+QVGC+MGC FC
Sbjct: 73 KLDETEKFLFTLADGHRIEAVFMAY------HHG--------NTACISTQVGCRMGCAFC 118
Query: 135 ATGTMGFKSNLSSGEIVEQLVHASRLS--NIRNVVFMGMGEPLNNYAALVEAVRIMTG-L 191
A+ G N SSGE++ Q+V L+ I NVV MG GEPL+NY ++ +R+++G +
Sbjct: 119 ASTLSGLARNCSSGEMLGQIVAIEHLTGKKISNVVLMGSGEPLDNYTEVLRFIRLLSGKI 178
Query: 192 PFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLM 251
+S + IT+ST GIV I + + G+ LA+SLHA + R +IMP A + L +M
Sbjct: 179 GRNISQRNITLSTCGIVPRILELAEEKLGITLALSLHAATDEKRKKIMPIANRYALSDVM 238
Query: 252 NALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLL----ETFQVVVNLIPFNPIGSV 307
A++ Y K + ++I EY ++ GVND E+ +L LL E F VNLIP NPI
Sbjct: 239 EAVRFYFKKTGRRISFEYALVFGVNDGEEDIRELSGLLRKKGEHFPAHVNLIPVNPIKE- 297
Query: 308 SQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 350
F K++ F++ L I T+R++MG DISGACGQL
Sbjct: 298 RDFTAPDRKKINRFKEGLE-KQGITCTIRREMGADISGACGQL 339
>gi|312111725|ref|YP_003990041.1| radical SAM protein [Geobacillus sp. Y4.1MC1]
gi|311216826|gb|ADP75430.1| radical SAM enzyme, Cfr family [Geobacillus sp. Y4.1MC1]
Length = 364
Score = 201 bits (511), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 109/327 (33%), Positives = 189/327 (57%), Gaps = 25/327 (7%)
Query: 31 IWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHSVV-DSSDDVTTKLLVKLQNG 89
I++++ + + E +LP L F +TL ++V +S D T K L +L +G
Sbjct: 46 IYEWLYQKRVTHFSEMTNLPKTLREKLSGHFD--ITTLKTLVKQTSKDGTMKFLFELHDG 103
Query: 90 GFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGE 149
+E V+MR++ +++C+++QVGC++GC FCA+ G K +L +GE
Sbjct: 104 YSIETVLMRHNYG--------------NSICVTTQVGCRIGCTFCASTLGGLKRHLEAGE 149
Query: 150 IVEQLVHASRL-----SNIRNVVFMGMGEPLNNYAALVEAVRIMTGLP-FQVSPKRITVS 203
IV Q+V + I ++V MG+GEP +NY L++ ++I+ + + ITVS
Sbjct: 150 IVAQVVKVQKELDEQNERISSIVVMGIGEPFDNYDELIKFLKIVNHAKGLNIGARHITVS 209
Query: 204 TVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQ 263
T GI+ I +F + +N A+SLHAP ++R ++MP +A+PL KLM+A++ Y + + +
Sbjct: 210 TSGIIPKIYQFADEGMQVNFAISLHAPTTELRTKLMPINKAYPLPKLMDAVRYYIEKTGR 269
Query: 264 KIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQK 323
++ EY + GVND+ +HA QL +L++ + VNLIP N + + RT +++ +F++
Sbjct: 270 RVTFEYGLFGGVNDQLEHAEQLAELIKGLKCHVNLIPVNYVPERNYVRTPR-EQIFAFER 328
Query: 324 ILRGSYNIRTTVRKQMGQDISGACGQL 350
L+ + I T+R++ G DI ACGQL
Sbjct: 329 ALK-KHGINVTIRREQGHDIDAACGQL 354
>gi|326389541|ref|ZP_08211108.1| radical SAM enzyme, Cfr family [Thermoanaerobacter ethanolicus JW
200]
gi|325994546|gb|EGD52971.1| radical SAM enzyme, Cfr family [Thermoanaerobacter ethanolicus JW
200]
Length = 342
Score = 201 bits (511), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 119/341 (34%), Positives = 194/341 (56%), Gaps = 30/341 (8%)
Query: 18 FEKAGIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHSVVD---- 73
F G ++ I+K++ + ++DE + LRSK K + ++
Sbjct: 16 FVNIGESRYRAKQIYKWIYDKKITDFDEMTDISKN----LRSKLKEIAYISQLKIEARRV 71
Query: 74 SSDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNF 133
S D T K L L++ +E V ++Y R G +T CIS+QVGC M C+F
Sbjct: 72 SEVDDTVKYLFLLEDNNIIEGVAIKY-----------RFG---NTACISTQVGCNMRCSF 117
Query: 134 CATGTMGFKSNLSSGEIVEQLVHAS-RLSNIRNVVFMGMGEPLNNYAALVEAVRIMT--- 189
CA+ G +L + E+V+Q++ I N+V MG GEP +NY +++ ++I+
Sbjct: 118 CASAIGGKVRDLKASEMVDQVIAIDGDYGKISNIVLMGSGEPFDNYDEVMKFIKIVNNPH 177
Query: 190 GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEK 249
GL + + IT+ST GIV I +F + +NL++SLHAP ++R Q+MP +A+PLE+
Sbjct: 178 GLG--IGSRHITISTCGIVPKIYQFADEKLQVNLSISLHAPNDELRTQLMPINKAYPLEE 235
Query: 250 LMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQ 309
LM A K Y + ++++I EY +++GVND+++HA+QL LL+ VNLIP N + +
Sbjct: 236 LMKACKYYVEKTRRRITFEYSLIEGVNDKKEHAYQLVDLLKGMLCHVNLIPINYVKEIG- 294
Query: 310 FRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 350
F+ ++++KV F+KI+ + I TVR+++G DI ACGQL
Sbjct: 295 FKKANNEKVMMFKKIIEDA-GISCTVRRELGSDIEAACGQL 334
>gi|403049389|ref|ZP_10903873.1| radical SAM enzyme, Cfr family protein [SAR86 cluster bacterium
SAR86D]
Length = 270
Score = 201 bits (510), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 108/257 (42%), Positives = 160/257 (62%), Gaps = 10/257 (3%)
Query: 112 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQL----VHASRLSNIRNVV 167
P R TLCISSQ GC + C FCATG GF+SNLS+ EI+ Q+ + S + N+V
Sbjct: 8 PEKKRITLCISSQAGCALQCTFCATGAQGFESNLSANEIIGQVWLANFYNSSQQKVTNIV 67
Query: 168 FMGMGEPLNNYAALVEAVRIMTG-LPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVS 226
FMGMGEP+ N+ ++E+ +IM + + +S KRIT+ST GI IN+ S++ ++LA+S
Sbjct: 68 FMGMGEPMLNFKPVIESAKIMKDQMAYSLSRKRITISTSGITPQINQLSSEI-DVSLAIS 126
Query: 227 LHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQK--IFIEYIMLDGVNDEEQHAHQ 284
LHAP+ +R +I+P + +P+++L+ + K+Y + + K I IEYI++DG+ND A +
Sbjct: 127 LHAPIDSLRDKIVPINKKYPIKELIKSCKKYLADYEGKRSITIEYILIDGINDSIDFAKK 186
Query: 285 LGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDIS 344
L +LL +NLIPFNP S ++ SS + F+ IL S TT+R G +
Sbjct: 187 LARLLSDVSCKINLIPFNPFEG-SSYKRSSQKNIEQFKSILM-SKGFITTLRVTRGDAVD 244
Query: 345 GACGQLVVNLPDKISAK 361
GACGQLV L + I +K
Sbjct: 245 GACGQLVGKLNNSIKSK 261
>gi|384440606|ref|YP_005655330.1| ribosomal RNA large subunit methyltransferase N [Thermus sp.
CCB_US3_UF1]
gi|359291739|gb|AEV17256.1| Ribosomal RNA large subunit methyltransferase N [Thermus sp.
CCB_US3_UF1]
Length = 358
Score = 201 bits (510), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 125/346 (36%), Positives = 182/346 (52%), Gaps = 35/346 (10%)
Query: 18 FEKAGIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHSVVDSSDD 77
F KA I W Y ++ E LP A L +++ L S D
Sbjct: 26 FRKAQIAH------WLYA--RGALDFAEMTDLPRALREALAREWRISEFALAEAYPSQDG 77
Query: 78 VTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATG 137
+ K L L +G EAV M Y++ R T+C+SS VGC GC FCATG
Sbjct: 78 -SVKYLFTLLDGKKTEAVYMPYEN--------------RKTVCLSSMVGCPAGCTFCATG 122
Query: 138 TMGFKSNLSSGEIVEQLV---HASRLS--NIRNVVFMGMGEPLNNYAALVEAVRIM---T 189
+GF NL++ EI+ QL+ H +S IRN V MGMGEPL N +++AVR+M
Sbjct: 123 ALGFGRNLTAAEILSQLLAIAHHQGISPREIRNAVLMGMGEPLLNLTQVLKAVRLMLHPK 182
Query: 190 GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEK 249
GL +SP+RIT+STVGI I + + G+ LA+SLHAP + R +I+P A +P+ +
Sbjct: 183 GL--AMSPRRITLSTVGIPRGIYRLAEEDLGVRLALSLHAPDDETRRRIIPTAHRYPMAE 240
Query: 250 LMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQ 309
++ A++ Y ++++I EY +L GVND A L +LL+ VNLIPFNP +
Sbjct: 241 ILEAVRHYYAKTKRRITFEYTLLQGVNDHPWQARLLARLLQGISAHVNLIPFNPWEG-AP 299
Query: 310 FRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLP 355
+ + + +F + LR + T++R G+D+ ACGQL + P
Sbjct: 300 VKGTPRAGILAFAQELR-RLGVPTSIRWSRGRDVGAACGQLALKAP 344
>gi|340750687|ref|ZP_08687525.1| ribosomal RNA large subunit methyltransferase N [Fusobacterium
mortiferum ATCC 9817]
gi|340562385|gb|EEO35365.2| ribosomal RNA large subunit methyltransferase N [Fusobacterium
mortiferum ATCC 9817]
Length = 352
Score = 201 bits (510), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 118/336 (35%), Positives = 185/336 (55%), Gaps = 22/336 (6%)
Query: 22 GIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSK-FKPLTSTLHSVVDSSDDVTT 80
G+K+ + ++ ++ + + +E +L LL K + P + L + S D T
Sbjct: 23 GMKKFYGKQLFNWLHKKIVRDLNEVTNLSLKDRELLTEKAYIPFLNLLKHQI-SKIDKTE 81
Query: 81 KLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMG 140
K L +L++G +E V++R+ R+TLCISSQVGC + C FCATG G
Sbjct: 82 KFLFQLEDGNTIETVLLRHKDK-------------RNTLCISSQVGCAVKCAFCATGQGG 128
Query: 141 FKSNLSSGEIVEQLVHASRL-----SNIRNVVFMGMGEPLNNYAALVEAVRIMTGLP-FQ 194
F +L+ EI+ Q+ R +N+ N+VFMGMGEPL N +++A+ I++
Sbjct: 129 FVRDLNVSEIINQVYTIERRLVKQGTNLNNIVFMGMGEPLLNLTNVLKALEILSNENGIN 188
Query: 195 VSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNAL 254
+S ++IT+ST GIV I K + + LA+SLH+ + + R +I+P R +PLE L L
Sbjct: 189 ISKRKITISTSGIVPNIEKILLEKVPVELAISLHSAINEKRDEIIPINRRYPLEDLHAVL 248
Query: 255 KEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSS 314
+EYQ+ ++++I EYI+++ N E A+ L + F VVNLIP NP+ R S
Sbjct: 249 QEYQRQTKRRITFEYILINNFNVSEGDANALADFVHDFDHVVNLIPCNPVEGTEMTR-PS 307
Query: 315 DDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 350
D K+ F L+ + T+R++ G DI GACGQL
Sbjct: 308 DKKIERFVNFLQNVRKVNVTIRREKGTDIDGACGQL 343
>gi|329897039|ref|ZP_08271811.1| Radical SAM superfamily protein [gamma proteobacterium IMCC3088]
gi|328921479|gb|EGG28865.1| Radical SAM superfamily protein [gamma proteobacterium IMCC3088]
Length = 383
Score = 201 bits (510), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 126/363 (34%), Positives = 207/363 (57%), Gaps = 35/363 (9%)
Query: 12 GIIRAE----FEKAGIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTST 67
G+ RA+ F + G K + K++ + C+++ +L + + L +
Sbjct: 18 GLTRAQMEAFFAECGEKSFRAQQVMKWIHHHGVCDFEAMTNLSKSLRAKLSERACVRPPE 77
Query: 68 LHSVVDSSDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGC 127
+ S DS+D T K LV+ GG VE+V++ P G R+TLC+SSQVGC
Sbjct: 78 VVSRHDSADG-TRKWLVRSIEGGLVESVLI--------------PDGDRATLCVSSQVGC 122
Query: 128 KMGCNFCATGTMGFKSNLSSGEIVEQLVHA---------SRLSNIRNVVFMGMGEPLNNY 178
+ C+FC+TG GF+ +L++ +I+ Q+ A + + NVV MGMGEPL N+
Sbjct: 123 SLDCSFCSTGKQGFERDLTASDIIGQVWLAIDSFDAFQPGKDRVVTNVVMMGMGEPLLNF 182
Query: 179 AALVEAVRIMT-GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQ 237
A+V A+ +M L + +S +R+T+ST G+V A++K +++ ++LAVSLHAP +R Q
Sbjct: 183 DAVVSAMDLMMDDLAYGLSKRRVTLSTSGVVPALDKL-AEVSCVSLAVSLHAPNDALRNQ 241
Query: 238 IMPAARAFPLEKLMNALKEY---QKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQV 294
++P + +P+ +L+ + + Y Q + ++ + IEY ++ GVND+ +HA +L LL+ F
Sbjct: 242 LVPINKKYPIAELLASAQRYLDAQNDRKRVVTIEYTLIAGVNDQPEHARELAVLLKNFPC 301
Query: 295 VVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNL 354
+NLIPFN S ++ S + VS F ++L + I TVR G DIS ACGQLV ++
Sbjct: 302 KINLIPFNAFPG-SSYQRPSGNAVSRFWQVLIDAGFI-VTVRTTRGDDISAACGQLVGDV 359
Query: 355 PDK 357
D+
Sbjct: 360 VDR 362
>gi|244538894|dbj|BAH82937.1| predicted enzyme [Candidatus Ishikawaella capsulata Mpkobe]
Length = 387
Score = 201 bits (510), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 114/262 (43%), Positives = 156/262 (59%), Gaps = 17/262 (6%)
Query: 112 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN--------- 162
P RSTLCISSQ+GC +GC FCATG GF NL EI+ Q+ AS++
Sbjct: 128 PENNRSTLCISSQIGCTVGCKFCATGKQGFNRNLEVAEIIGQIWQASKILRETKLSSRKR 187
Query: 163 -IRNVVFMGMGEPLNNYAALVEAVRIMTG-LPFQVSPKRITVSTVGIVHAINKFHSDLPG 220
N+V MGMGEPL N +V ++ IM F +S +R+T+ST GIV AI K S +
Sbjct: 188 LFTNIVLMGMGEPLLNVKNVVSSIHIMLDKFGFGLSKRRVTISTAGIVPAIYKLAS-MID 246
Query: 221 LNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKN---SQQKIFIEYIMLDGVND 277
+ LA+SLHAP +R +IMP + + + L+ A+K Y +N ++ KI IEY+ML+ +ND
Sbjct: 247 VGLAISLHAPNDLIRDKIMPINKKYNIAMLLAAVKHYIENGVANRGKITIEYVMLNHIND 306
Query: 278 EEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRK 337
+HAHQL +LL+ +NLIP+N S R SSD +++ F KIL Y T +RK
Sbjct: 307 SVEHAHQLARLLKNIPSKINLIPWNYFKGSSYLR-SSDSQINIFAKILI-EYGFTTIIRK 364
Query: 338 QMGQDISGACGQLVVNLPDKIS 359
G DI ACGQL N+ +I+
Sbjct: 365 TRGDDIDAACGQLTGNVISRIN 386
>gi|392940848|ref|ZP_10306492.1| 23S rRNA m2A2503 methyltransferase [Thermoanaerobacter siderophilus
SR4]
gi|392292598|gb|EIW01042.1| 23S rRNA m2A2503 methyltransferase [Thermoanaerobacter siderophilus
SR4]
Length = 342
Score = 201 bits (510), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 117/340 (34%), Positives = 194/340 (57%), Gaps = 28/340 (8%)
Query: 18 FEKAGIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHSVVD---- 73
F G ++ I+K++ + ++DE + LRSK K + ++
Sbjct: 16 FVNIGESRYRAKQIYKWIYDKKITDFDEMTDISKN----LRSKLKEIAYISQLKIEARRV 71
Query: 74 SSDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNF 133
S D T K L L++ +E V ++Y R G +T C+S+QVGC M C+F
Sbjct: 72 SEVDDTVKYLFLLEDNNIIEGVAIKY-----------RFG---NTACVSTQVGCNMRCSF 117
Query: 134 CATGTMGFKSNLSSGEIVEQLVHAS-RLSNIRNVVFMGMGEPLNNYAALVEAVRIMTGLP 192
CA+ G +L + E+V+Q++ I N+V MG GEP +NY +++ ++I+ P
Sbjct: 118 CASAIGGKVRDLKASEMVDQVIAIDGDYGKISNIVLMGSGEPFDNYDEVMKFIKIVNN-P 176
Query: 193 FQ--VSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKL 250
+ + + IT+ST GIV I +F + +NL++SLHAP ++R Q+MP +A+PLE+L
Sbjct: 177 YGLGIGGRHITISTCGIVPKIYQFADEKLQVNLSISLHAPNDELRTQLMPINKAYPLEEL 236
Query: 251 MNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQF 310
M A K Y + ++++I EY +++GVND+++HA+QL LL+ VNLIP N + + F
Sbjct: 237 MKACKYYVEKTRRRITFEYSLIEGVNDKKEHAYQLVDLLKGMLCHVNLIPINYVKEIG-F 295
Query: 311 RTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 350
+ ++++KV F+KI+ + I TVR+++G DI ACGQL
Sbjct: 296 KKANNEKVMMFKKIIEDA-GISCTVRRELGSDIEAACGQL 334
>gi|319947501|ref|ZP_08021733.1| cfr family radical SAM enzyme [Streptococcus australis ATCC 700641]
gi|417919763|ref|ZP_12563287.1| 23S rRNA m2A2503 methyltransferase [Streptococcus australis ATCC
700641]
gi|319746441|gb|EFV98702.1| cfr family radical SAM enzyme [Streptococcus australis ATCC 700641]
gi|342831740|gb|EGU66050.1| 23S rRNA m2A2503 methyltransferase [Streptococcus australis ATCC
700641]
Length = 362
Score = 201 bits (510), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 124/360 (34%), Positives = 194/360 (53%), Gaps = 38/360 (10%)
Query: 12 GIIRAEF----EKAGIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKF--KPLT 65
G+ R E E+ G K+ IW+++ ++E +L L +F PL
Sbjct: 7 GLTRQELIEWAEENGEKKFRATQIWEWLYRKRVQSFEEMTNLSKDLIETLNDQFVINPLK 66
Query: 66 STLHSVVDSSDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQV 125
+V S D T K L +L +G +E V+MR L ++C+++QV
Sbjct: 67 ---QRIVQESADGTVKYLFELPDGMLIETVLMRQHYGL--------------SVCVTTQV 109
Query: 126 GCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSNIR-------NVVFMGMGEPLNNY 178
GC +GC FCA+G + + +L+SGEIV Q++ + + R ++V MG+GEP +NY
Sbjct: 110 GCNIGCTFCASGLIKKQRDLNSGEIVAQIMLVQKYFDERGQDERVSHIVVMGIGEPFDNY 169
Query: 179 AALVEAVRIMT---GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVR 235
++ VR + GL + + ITVST G+ H I F ++ +NLAVSLHAP D+R
Sbjct: 170 KNVLSFVRTVNDDKGLA--IGARHITVSTSGLAHKIRDFANEGVQVNLAVSLHAPNNDLR 227
Query: 236 CQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVV 295
IM RAFP+EKL A++ Y + + +++ EYIML+ VND + A +L +LL+ + +
Sbjct: 228 SSIMKINRAFPIEKLFAAIEYYIETTNRRVTFEYIMLNEVNDGVEQALELAELLKKIKKL 287
Query: 296 --VNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVN 353
VNLIP+NP+ Q+ S ++V +F L+ + + VR++ G DI ACGQL N
Sbjct: 288 SYVNLIPYNPVSEHDQYSRSPRERVMAFYDTLKKN-GVNCVVRQEHGTDIDAACGQLRSN 346
>gi|336063790|ref|YP_004558649.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
pasteurianus ATCC 43144]
gi|334281990|dbj|BAK29563.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
pasteurianus ATCC 43144]
Length = 368
Score = 201 bits (510), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 119/360 (33%), Positives = 194/360 (53%), Gaps = 34/360 (9%)
Query: 22 GIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKF--KPLTSTLHSVVDSSDDVT 79
G K+ IW ++ ++E ++ ++L F PL V+ + D T
Sbjct: 28 GEKKFRATQIWDWLYRKRVQSFEEMTNISKDFIAVLNENFCVNPLK---QRVIQEASDGT 84
Query: 80 TKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTM 139
K L +L +G +E V+MR L ++C++SQVGC +GC+FCA+G +
Sbjct: 85 VKYLFELPDGMLIETVLMRQHYGL--------------SVCVTSQVGCNIGCSFCASGLL 130
Query: 140 GFKSNLSSGEIVEQLVHASRLSNIR-------NVVFMGMGEPLNNYAALVEAVRIMT--- 189
+ +L+SGEI Q++ + + R +VV MG+GEP +NY ++ +R +
Sbjct: 131 KKQRDLTSGEITSQIMMVQKYFDERGQDERVSHVVVMGIGEPFDNYNNVLRFLRTINDDN 190
Query: 190 GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEK 249
GL + + ITVST G+ H I F + +NLAVSLHAP ++R QIM R+FPLEK
Sbjct: 191 GLA--IGARHITVSTSGLAHKIRDFAHESLQVNLAVSLHAPNNELRSQIMRVNRSFPLEK 248
Query: 250 LMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVV--VNLIPFNPIGSV 307
L A++ Y + + +++ EYIML+ VND ++A +L L + + + +NLIP+NP+
Sbjct: 249 LFAAIEYYVETTNRRVTFEYIMLNEVNDFPENAQELADLTKKIRKLSYINLIPYNPVSEH 308
Query: 308 SQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDKISAKSTPPVT 367
Q+ SS ++V++F +L+ + + VR++ G DI ACGQL N + K+ T
Sbjct: 309 DQYSRSSKERVAAFYDVLKKN-GVNCVVRQEHGTDIDAACGQLRSNTMKRDRQKAVAEKT 367
>gi|237741553|ref|ZP_04572034.1| radical SAM domain-containing protein [Fusobacterium sp. 4_1_13]
gi|229429201|gb|EEO39413.1| radical SAM domain-containing protein [Fusobacterium sp. 4_1_13]
Length = 358
Score = 201 bits (510), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 119/336 (35%), Positives = 183/336 (54%), Gaps = 17/336 (5%)
Query: 22 GIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSK-FKPLTSTLHSVVDSSDDVTT 80
G+K+ + ++ ++ + +DE +L +L K + P + L + S D T
Sbjct: 24 GLKKFYGKEVFIWLHKKITRSFDEMTNLSLKDREILTEKTYIPFFNLLKHQI-SKIDRTE 82
Query: 81 KLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMG 140
K L +L++ +E V++R+ S K R+TLC+SSQVGC + C+FCATG G
Sbjct: 83 KFLFELEDKRTIETVLLRHKDSKNK--------EIRNTLCVSSQVGCPVKCSFCATGQSG 134
Query: 141 FKSNLSSGEIVEQLVHASRL-----SNIRNVVFMGMGEPLNNYAALVEAVRIMTGLP-FQ 194
+ NLS EI+ Q+ R + N+VFMGMGEPL N L +++ I++
Sbjct: 135 YMRNLSVSEILNQIYTVERRLRKKGETLNNLVFMGMGEPLLNIDNLAKSLSIISNENGVN 194
Query: 195 VSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNAL 254
+S ++IT+ST G+V I K D + LA+SLH+ + + R +I+P + FPLE L L
Sbjct: 195 ISKRKITISTSGVVSGIEKILLDKIPIELAISLHSAINEKRDKIIPLNKNFPLEDLSAVL 254
Query: 255 KEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSS 314
EYQK ++++I EYI++D N E A+ L + F VVNLIP+N + V R S
Sbjct: 255 VEYQKQTKRRITFEYILIDNFNISETDANALADFIHQFDHVVNLIPYNEVEGVEHTRPSV 314
Query: 315 DDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 350
K+ F L+ + T+R++ G DI GACGQL
Sbjct: 315 -KKIDKFYNYLKNIRKVNVTLRQEKGSDIDGACGQL 349
>gi|374299548|ref|YP_005051187.1| ribosomal RNA large subunit methyltransferase N [Desulfovibrio
africanus str. Walvis Bay]
gi|332552484|gb|EGJ49528.1| Ribosomal RNA large subunit methyltransferase N [Desulfovibrio
africanus str. Walvis Bay]
Length = 362
Score = 201 bits (510), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 123/340 (36%), Positives = 183/340 (53%), Gaps = 39/340 (11%)
Query: 31 IWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHSVVDS---SDDVTTKLLVKLQ 87
+W+++ + +++E ++ A LR K +D+ SDD T K L++L
Sbjct: 32 VWQWMWQKGVSDFEEMSNVSKA----LRGKLAEHAVIRPPTIDTVRESDDGTVKFLLRLA 87
Query: 88 NGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSS 147
+G +E V++ P T C+S+QVGC MGC FC+TGTMG NL+
Sbjct: 88 DGALIETVLL--------------PSRTHYTQCLSTQVGCAMGCAFCSTGTMGLARNLAH 133
Query: 148 GEIVEQLVHASRL-----------SNIRNVVFMGMGEPLNNYAALVEAVRIMTG-LPFQV 195
EI Q++ + ++RN+VFMGMGEPL NY LV+++ + F
Sbjct: 134 SEICGQVLLGRKWLEQKNSQDKGERSLRNLVFMGMGEPLMNYDTLVKSLHTLRDDKAFGF 193
Query: 196 SPKRITVSTVGIVHAINKFHSDLPGL-NLAVSLHAPVQDVRCQIMP-AARAFPLEKLMNA 253
S +R+TVST G+ + + + GL LAVSLHAP Q++R +IMP AAR PL LM
Sbjct: 194 SSRRMTVSTAGVPGRMTELVTS--GLARLAVSLHAPTQELRERIMPRAARMHPLPALMEE 251
Query: 254 LKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTS 313
LK+ Q++ EYI++ G+ND +QHA +L +LL + +NLI NP S F
Sbjct: 252 LKKLPLRPQERTTFEYILIGGLNDTQQHARELVRLLSHVRAKINLIACNPAKD-SPFAAP 310
Query: 314 SDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVN 353
+ + + +FQ++LR + +RK GQDI ACGQLV
Sbjct: 311 TMEAIEAFQQVLR-DKGLVAMLRKSKGQDIEAACGQLVTQ 349
>gi|456388562|gb|EMF54002.1| hypothetical protein SBD_3670 [Streptomyces bottropensis ATCC
25435]
Length = 368
Score = 201 bits (510), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 119/325 (36%), Positives = 175/325 (53%), Gaps = 33/325 (10%)
Query: 44 DEFPSLPSAAYSLLRSKFKPLTSTLHSVVDSSDDVTTKLLVKLQNGGFVEAVIMRYDSSL 103
+++ +P+ A LR P T+ + + + T K L +L +G VE+V+MRY
Sbjct: 60 EQWTDIPAGAREKLREALLPELMTVVRHLSTDQETTRKTLWRLFDGTLVESVLMRYPD-- 117
Query: 104 GKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRL--- 160
R T+CISSQ GC M C FCATG G NLS+ EIV Q+V R
Sbjct: 118 ------------RVTMCISSQAGCGMNCPFCATGQAGLDRNLSTAEIVHQIVDGMRALRD 165
Query: 161 -------SNIRNVVFMGMGEPLNNYAALVEAVRIMT-----GLPFQVSPKRITVSTVGIV 208
+ + N+VFMGMGEPL NY +V AVR +T GL +S + ITVSTVG+V
Sbjct: 166 GEIPGGPARLSNIVFMGMGEPLANYNRVVGAVRRLTDPEPDGL--GLSQRGITVSTVGLV 223
Query: 209 HAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIE 268
AI++F + LA+SLHAP ++R ++P + + ++++A EY S +++ IE
Sbjct: 224 PAIHRFADEGFKCRLAISLHAPDDELRDTLVPVNTRWKVREVLDAGWEYAARSGRRLSIE 283
Query: 269 YIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGS 328
Y ++ +ND+ +LG+LL+ V VNLIP NP + +D+ + + I S
Sbjct: 284 YALIRDINDQAWRGDRLGRLLKGKPVHVNLIPLNPTPGSKWTASRPEDEKAFVEAI--AS 341
Query: 329 YNIRTTVRKQMGQDISGACGQLVVN 353
+ + TVR GQ+I GACGQL
Sbjct: 342 HGVPVTVRDTRGQEIDGACGQLAAT 366
>gi|418637153|ref|ZP_13199480.1| 23S rRNA m2A2503 methyltransferase, partial [Staphylococcus
lugdunensis VCU139]
gi|374839520|gb|EHS03032.1| 23S rRNA m2A2503 methyltransferase, partial [Staphylococcus
lugdunensis VCU139]
Length = 285
Score = 201 bits (510), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 110/291 (37%), Positives = 168/291 (57%), Gaps = 23/291 (7%)
Query: 67 TLHSVV-DSSDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQV 125
TL +VV S D T K L +LQ+G +E V+MR+D +++C+++QV
Sbjct: 1 TLTTVVKQESKDGTIKFLFELQDGYTIETVLMRHDYG--------------NSVCVTTQV 46
Query: 126 GCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRL-----SNIRNVVFMGMGEPLNNYAA 180
GC++GC FCA+ G K NL +GEIV Q++ + + +V MG+GEP NY
Sbjct: 47 GCRIGCTFCASTLGGLKRNLEAGEIVSQVLTVQKALDATEERVSQIVIMGIGEPFENYDE 106
Query: 181 LVEAVRIMTGL-PFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIM 239
+++ +RI+ + + ITVST GIV I F + +N AVSLHA DVR ++M
Sbjct: 107 MMDFLRIVNDDNSLNIGARHITVSTSGIVPRIYDFADEEIQINFAVSLHAAKDDVRSKLM 166
Query: 240 PAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLI 299
P RA+ ++KLM A++ YQ+ + ++I EY + GVND+ +HA +L L++ VNLI
Sbjct: 167 PINRAYNVDKLMEAIRYYQQKTNRRITFEYGLFGGVNDQLEHARELAHLIKNLNCHVNLI 226
Query: 300 PFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 350
P N + + +TS DD + F+K L+ + T+R++ G DI ACGQL
Sbjct: 227 PVNHVPERNYVKTSKDD-IFKFEKELK-RLGVNATIRREQGSDIDAACGQL 275
>gi|262066381|ref|ZP_06025993.1| radical SAM enzyme, Cfr family [Fusobacterium periodonticum ATCC
33693]
gi|291379946|gb|EFE87464.1| radical SAM enzyme, Cfr family [Fusobacterium periodonticum ATCC
33693]
Length = 358
Score = 201 bits (510), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 124/330 (37%), Positives = 180/330 (54%), Gaps = 23/330 (6%)
Query: 30 LIW--KYVIENPNCEWDEFPSLPSAAYSLLRSK-FKPLTSTLHSVVDSSDDVTTKLLVKL 86
IW K +I N +D+ +L +L+ + P + L V S D T K L +L
Sbjct: 34 FIWLHKKIIRN----FDDMTNLSLKDREILKENAYIPFFNLLKHQV-SKLDKTEKFLFEL 88
Query: 87 QNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLS 146
++ G +E V++R+ S K R+TLC+SSQVGC + C+FCATG G+ NLS
Sbjct: 89 EDKGTIETVLLRHRDSKNK--------EIRNTLCVSSQVGCPVKCSFCATGQGGYMRNLS 140
Query: 147 SGEIVEQLVHASRL-----SNIRNVVFMGMGEPLNNYAALVEAVRIMTGLP-FQVSPKRI 200
EI+ Q+ R ++ N+VFMGMGEPL N L A+ I++ +S ++I
Sbjct: 141 VSEILNQVYTVERRLRKKDESLNNLVFMGMGEPLLNIDNLSTALSIISNENGINISKRKI 200
Query: 201 TVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKN 260
T+ST G+V I K + + LAVSLH+ + + R QI+P + FPLE L L EYQK
Sbjct: 201 TISTSGVVPGIEKILLEKIPIELAVSLHSAINEKRDQIIPINKNFPLEDLSAVLVEYQKQ 260
Query: 261 SQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSS 320
++++I EYI++D N E A+ L + F VVNLIP+N + V R S K+
Sbjct: 261 TKRRITFEYILIDNFNISEVDANALADFIHQFDHVVNLIPYNEVEGVEHTRPSM-KKIER 319
Query: 321 FQKILRGSYNIRTTVRKQMGQDISGACGQL 350
F L+ + T+R++ G DI GACGQL
Sbjct: 320 FYNYLKNVRKVNVTLRQEKGSDIDGACGQL 349
>gi|407803612|ref|ZP_11150446.1| Fe-S-cluster redox protein [Alcanivorax sp. W11-5]
gi|407022456|gb|EKE34209.1| Fe-S-cluster redox protein [Alcanivorax sp. W11-5]
Length = 382
Score = 201 bits (510), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 122/297 (41%), Positives = 172/297 (57%), Gaps = 31/297 (10%)
Query: 75 SDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFC 134
S D T K ++++ GG VE V + P G R TLC+SSQVGC + C+FC
Sbjct: 77 SRDGTRKWVLQVDGGGAVETVFI--------------PDGRRGTLCVSSQVGCSVDCSFC 122
Query: 135 ATGTMGFKSNLSSGEIVEQLVHASRLSNIR---------NVVFMGMGEPLNNYAALVEAV 185
+TG GF+ +LSS EI+ Q+ AS+ R NVV MGMGEPL NY +V A+
Sbjct: 123 STGKQGFQRDLSSAEIIGQVWLASKTFGPRRNLGEHPVTNVVMMGMGEPLLNYDNVVRAM 182
Query: 186 RIMT-GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARA 244
RIM L + +S +RIT+ST G+V I++ DL ++LA+SLHAP +R ++P R
Sbjct: 183 RIMKDDLGYGISKRRITLSTSGVVPMIDRLSQDLD-VSLAISLHAPNDALRDVLVPLNRK 241
Query: 245 FPLEKLMNALKEYQ---KNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLET-FQVVVNLIP 300
+PLE+L+ A + Y ++ + I +EY++L G+ND+ +HA QL KLL + +NLIP
Sbjct: 242 YPLEELLAACQRYSDGVEHRHKSITMEYVLLKGINDQPEHARQLVKLLRNRMPIKLNLIP 301
Query: 301 FNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDK 357
FNP R + D V +F K L + TT+R G DI ACGQLV + D+
Sbjct: 302 FNPFPHSGYERPAKPD-VLAFHKYL-NENGLMTTIRTTRGDDIDAACGQLVGEVMDR 356
>gi|149180610|ref|ZP_01859114.1| hypothetical protein BSG1_16675 [Bacillus sp. SG-1]
gi|148851763|gb|EDL65909.1| hypothetical protein BSG1_16675 [Bacillus sp. SG-1]
Length = 358
Score = 201 bits (510), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 117/339 (34%), Positives = 186/339 (54%), Gaps = 26/339 (7%)
Query: 22 GIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHSVVDSSDDVTTK 81
G K+ IW ++ + + + ++ + +LL F L + + S D T K
Sbjct: 22 GEKKFRAAQIWDWLYKKRVTNFADMKNIGANCITLLEENF-HLGTLKEEIKQESKDGTIK 80
Query: 82 LLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGF 141
L KLQ+G +E V+M+++ ++C+++QVGC +GC+FCA+G +
Sbjct: 81 FLFKLQDGNLIETVLMKFNYGY--------------SVCVTTQVGCNIGCSFCASGLLKK 126
Query: 142 KSNLSSGEIVEQL----VHASRLSN---IRNVVFMGMGEPLNNYAALVEAVRIMTGLP-F 193
+LSSGEIVEQ+ +H N + ++V MG+GEP +NY L++ +R++
Sbjct: 127 NRDLSSGEIVEQIMNVQLHLDSKGNDERVSHIVVMGIGEPFDNYDNLMDFLRVVNDQKGL 186
Query: 194 QVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNA 253
+ + ITVST G+ + I + + +NLAVSLHAP ++R QIM +A+PLEKLM A
Sbjct: 187 SIGARHITVSTSGLANRIYDWADENIQVNLAVSLHAPNNELRTQIMKINKAYPLEKLMPA 246
Query: 254 LKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVV--VNLIPFNPIGSVSQFR 311
+ Y + + ++I EYI+L VND + A QL KLL+ + + VNLIP+NP+ Q++
Sbjct: 247 IDYYLEKTNRRITFEYILLQDVNDHKAEALQLAKLLKNKKHLSYVNLIPYNPVDEHGQYQ 306
Query: 312 TSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 350
S+ + + F L I VR + G DI ACGQL
Sbjct: 307 RSTKEAIVEFYGTLLDQ-GINCGVRTEHGTDIDAACGQL 344
>gi|354582480|ref|ZP_09001382.1| radical SAM enzyme, Cfr family [Paenibacillus lactis 154]
gi|353199879|gb|EHB65341.1| radical SAM enzyme, Cfr family [Paenibacillus lactis 154]
Length = 346
Score = 201 bits (510), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 116/327 (35%), Positives = 182/327 (55%), Gaps = 29/327 (8%)
Query: 32 WKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHSVVDSSDDVTTKLLVKLQNGGF 91
W YV + ++E +L S L + F +T T + ++S D T K L L +
Sbjct: 33 WLYVKRVDS--FEEMTNLSKELRSKLDASFSFVTLTEITKLESKDG-TVKFLFGLHDDHA 89
Query: 92 VEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIV 151
+E VIM+++ +++C+++QVGC++GC FCA+ G K NL+SGEIV
Sbjct: 90 IETVIMKHNYG--------------NSICVTTQVGCRIGCTFCASTLGGLKRNLTSGEIV 135
Query: 152 EQLVHASRL-----SNIRNVVFMGMGEPLNNYAALVEAVRIM---TGLPFQVSPKRITVS 203
Q+V A ++ + ++V MG GEP NY A ++ +R M GL + + ITVS
Sbjct: 136 AQVVQAQKILDKTGERVSSIVIMGSGEPFENYDATMKFLRTMIHEKGL--NIGQRHITVS 193
Query: 204 TVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQ 263
T GIV I KF + +NLA+S+HAP +R ++MP R FP + ++ AL+ YQ + +
Sbjct: 194 TSGIVPNIYKFAEEDTQINLAISIHAPNDKLRSKLMPVNRRFPFDDVIEALRFYQAKTGR 253
Query: 264 KIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQK 323
+I EY ++ GVND+ +HA +L +++ VNLIP N + RTS +D + FQ+
Sbjct: 254 RITFEYALIGGVNDQVEHAEELADVIKDMNCFVNLIPVNHVPERKYVRTSRND-IFKFQR 312
Query: 324 ILRGSYNIRTTVRKQMGQDISGACGQL 350
L + T+R++ G DI+ ACGQL
Sbjct: 313 AL-ADKGVNVTIRREQGHDIAAACGQL 338
>gi|320334270|ref|YP_004170981.1| ribosomal RNA large subunit methyltransferase N [Deinococcus
maricopensis DSM 21211]
gi|319755559|gb|ADV67316.1| Ribosomal RNA large subunit methyltransferase N [Deinococcus
maricopensis DSM 21211]
Length = 346
Score = 201 bits (510), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 121/332 (36%), Positives = 181/332 (54%), Gaps = 24/332 (7%)
Query: 31 IWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHSVVDSSDDVTTKLLVKLQNGG 90
+ ++V E +++ +LP+ + L + + L LH+ S D + K L L +G
Sbjct: 22 LLQWVFEKGAGRFEDMTNLPANVRAELAASYS-LDPFLHTETARSRDGSVKYLFTLHDGK 80
Query: 91 FVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEI 150
+EAV M Y R T+C+S+ VGC C FCATG MGF NL++GEI
Sbjct: 81 QMEAVYMPYLD--------------RKTVCVSTMVGCPAKCAFCATGAMGFGRNLTAGEI 126
Query: 151 VEQLVHASRLS-----NIRNVVFMGMGEPLNNYAALVEAVRIMTG-LPFQVSPKRITVST 204
V Q++ +R +IR++VFMGMGE L NY ++ A RI+ L F +S +R+T+ST
Sbjct: 127 VGQVLAVARGEGLPPRDIRSLVFMGMGEGLLNYDNVMLASRILLHPLAFDMSKRRVTLST 186
Query: 205 VGIVHAINKF-HSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQ 263
VG+ I K D G+ LA+SLHAP ++ R +I+P + +M+A +EYQ + +
Sbjct: 187 VGLPKGIRKLAREDDLGIRLAISLHAPDEETRQRIIPTGHRNSIADIMDAAREYQDVTGR 246
Query: 264 KIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQK 323
+I EY ML GVND A +L LL VNLIP NP S F S++ ++ +F
Sbjct: 247 RITFEYSMLRGVNDHLWQAEELAGLLRGLVAHVNLIPMNPWEG-SGFEESTEAQIQAFYD 305
Query: 324 ILRGSYNIRTTVRKQMGQDISGACGQLVVNLP 355
+L + + +VR+ G+D ACGQL + P
Sbjct: 306 VL-SARGVEVSVRRSRGRDAGAACGQLALKRP 336
>gi|160880620|ref|YP_001559588.1| radical SAM protein [Clostridium phytofermentans ISDg]
gi|205829644|sp|A9KM95.1|RLMN_CLOPH RecName: Full=Probable dual-specificity RNA methyltransferase RlmN;
AltName: Full=23S rRNA
(adenine(2503)-C(2))-methyltransferase; AltName:
Full=23S rRNA m2A2503 methyltransferase; AltName:
Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=tRNA (adenine(37)-C(2))-methyltransferase;
AltName: Full=tRNA m2A37 methyltransferase
gi|160429286|gb|ABX42849.1| radical SAM enzyme, Cfr family [Clostridium phytofermentans ISDg]
Length = 356
Score = 201 bits (510), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 116/347 (33%), Positives = 195/347 (56%), Gaps = 19/347 (5%)
Query: 14 IRAEFEKAGIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHSVVD 73
++A + G K+ I++++ +++E +L + L S+++ + +
Sbjct: 18 LKASLKIIGEKEFRAKQIYEWLHVKLVRDFEEMTNLSKELRAKLASEYELICVNDLERYE 77
Query: 74 SSDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNF 133
S D T K L +L +G VE V+M+Y ++G +++CISSQVGC+MGC F
Sbjct: 78 SKMDGTVKYLFRLSDGNVVECVLMKY------HHG--------NSVCISSQVGCRMGCRF 123
Query: 134 CATGTMGFKSNLSSGEIVEQLVHASRLSNIR--NVVFMGMGEPLNNYAALVEAVRIMTGL 191
CA+ G NL + E+++++ RLS R N+V MG GEP++NY V+ +R+++
Sbjct: 124 CASTLGGLTRNLKTSEMLDEVYQIQRLSGERVSNIVIMGTGEPMDNYDNFVKFIRMISSS 183
Query: 192 P-FQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKL 250
+S + ITVST GIV + + + LA+SLHAP + R +IMP A ++ L+ +
Sbjct: 184 DGLNISQRNITVSTCGIVPKMRALAEEGFAITLALSLHAPNDEERAKIMPVANSYQLQDV 243
Query: 251 MNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQF 310
+NA Y + + +++ EY ++DGVND A +L +LL+ VNLIP NPI +
Sbjct: 244 LNACDYYYEKTGRRVSYEYSLVDGVNDTAACAKELSRLLKGKNCHVNLIPVNPIKE-RDY 302
Query: 311 RTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDK 357
+ S+ + + +F+ IL + I T+R++MG DI+ ACGQL + DK
Sbjct: 303 KRSTGNNIQNFKNILEKN-RINVTIRREMGSDINAACGQLRKSYTDK 348
>gi|404493665|ref|YP_006717771.1| ribosomal RNA large subunit methyltransferase N [Pelobacter
carbinolicus DSM 2380]
gi|123729427|sp|Q3A2Z4.1|RLMN_PELCD RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|77545701|gb|ABA89263.1| 23S rRNA (2-methyl-A2503)-methyltransferase [Pelobacter
carbinolicus DSM 2380]
Length = 371
Score = 201 bits (510), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 119/298 (39%), Positives = 179/298 (60%), Gaps = 28/298 (9%)
Query: 58 RSKFKPLTSTLHSVVDSSDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRS 117
R++ LT + S D T K L +L++G +E+V + D + R+
Sbjct: 67 RARISRLTP---EATEDSRDGTRKYLFRLEDGETIESVRIPMDDN-------------RA 110
Query: 118 TLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSNIRNVVFMGMGEPLNN 177
TLCIS+QVGC MGC FC TG+ G NL+ GEIV Q+ A + N+V MGMGEPL+N
Sbjct: 111 TLCISTQVGCAMGCVFCHTGSFGLVRNLTPGEIVNQVCAALADGPVNNIVLMGMGEPLHN 170
Query: 178 YAALVEAVRIM---TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDV 234
+V+A++I+ GL + SP+++T+ST G+V + + + +NLAVSL+A +V
Sbjct: 171 LDNVVKALQILYMPQGLDY--SPRKVTLSTAGLVPQMQELGKRVR-VNLAVSLNATTDEV 227
Query: 235 RCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQV 294
R ++MP + +PL++LM A ++Y +++++I EYI++ VND +Q A +L KLL +
Sbjct: 228 RNRLMPVNQRYPLQQLMAACRQYPLHAKKRITFEYILIRDVNDSDQDARRLVKLLHGIKA 287
Query: 295 VVNLIPFNPIGSVSQFRTSSDDKVSSFQKIL--RGSYNIRTTVRKQMGQDISGACGQL 350
VN+IPFN S S+FR +++++S FQ L G IR R GQDIS ACGQL
Sbjct: 288 KVNIIPFNE-HSASEFRAPTEERISRFQGYLLDHGMVAIR---RASKGQDISAACGQL 341
>gi|422849202|ref|ZP_16895878.1| cfr family radical SAM enzyme [Streptococcus sanguinis SK115]
gi|325690223|gb|EGD32227.1| cfr family radical SAM enzyme [Streptococcus sanguinis SK115]
Length = 362
Score = 200 bits (509), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 120/349 (34%), Positives = 192/349 (55%), Gaps = 34/349 (9%)
Query: 19 EKAGIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKF--KPLTSTLHSVVDSSD 76
E G K+ IW+++ ++E +L + L +F PL +V S
Sbjct: 18 EAQGEKKFRAAQIWEWLYRKRVQSFEEMTNLSKDLIATLNDQFVVNPLK---QRIVQESA 74
Query: 77 DVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCAT 136
D T K L +L +G +E V+MR L ++C+++QVGC +GC FCA+
Sbjct: 75 DGTVKYLFELPDGMLIETVLMRQHYGL--------------SVCVTTQVGCNIGCTFCAS 120
Query: 137 GTMGFKSNLSSGEIVEQLVHASRLSNIR-------NVVFMGMGEPLNNYAALVEAVRIMT 189
G + + +L++GEIV Q++ + + R ++V MG+GEP +NY +++ VR +
Sbjct: 121 GLIKKQRDLNNGEIVAQIMLVQKYFDERGQDERVSHIVVMGIGEPFDNYDNVLKFVRTVN 180
Query: 190 ---GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFP 246
GL + + ITVST G+ H I F ++ +NLAVSLHAP D+R IM R+FP
Sbjct: 181 DDKGLA--IGARHITVSTSGLAHKIRDFANEGVQVNLAVSLHAPNNDLRTSIMRINRSFP 238
Query: 247 LEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVV--VNLIPFNPI 304
+EKL A++ Y + + +++ EYIML+ VND + A +L +LL+ + + VNLIP+NP+
Sbjct: 239 IEKLFAAIEYYIETTNRRVTFEYIMLNEVNDGVEQAKELAELLKNIKKLSYVNLIPYNPV 298
Query: 305 GSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVN 353
Q+ S ++V +F IL+ + + VR++ G DI ACGQL N
Sbjct: 299 SEHDQYSRSPKERVMAFYDILKKN-GVNCVVRQEHGTDIDAACGQLRSN 346
>gi|398805477|ref|ZP_10564450.1| 23S rRNA, methyltransferase [Polaromonas sp. CF318]
gi|398091513|gb|EJL81954.1| 23S rRNA, methyltransferase [Polaromonas sp. CF318]
Length = 382
Score = 200 bits (509), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 137/371 (36%), Positives = 192/371 (51%), Gaps = 46/371 (12%)
Query: 9 FDGGIIRAEFEKAGIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTL 68
FD + A E+ G K+ +++++ + ++ + L + LR K LT +
Sbjct: 8 FDLDGLAAFCERLGEKRFRATQLFRWIHQKGATDFTQMTDLAKS----LREK---LTGSA 60
Query: 69 H----SVVDSSD--DVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCIS 122
H VV D D T K L + G +E V + P R TLCIS
Sbjct: 61 HIQGPKVVSRHDSADGTVKWLFDVGAGDVIETVFI--------------PETDRGTLCIS 106
Query: 123 SQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN---------IRNVVFMGMGE 173
SQ GC +GC FC+TG GF NL++GEI+ QL A I NVV MGMGE
Sbjct: 107 SQAGCAVGCRFCSTGHQGFSRNLTTGEIISQLWFAEHFLRQHLGREERVISNVVMMGMGE 166
Query: 174 PLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQ 232
PL NY LV A+++M + +S +R+TVST G+V I++ D P + LAVSLHAP
Sbjct: 167 PLQNYGQLVPALKVMLDDHGYGLSRRRVTVSTSGVVPMIDRLAGDCP-VALAVSLHAPED 225
Query: 233 DVRCQIMPAARAFPLEKLMNALKEYQKNSQQK-IFIEYIMLDGVNDEEQHAHQLGKLLET 291
+R ++P + +P+ +L+ A YQ ++ + I EY MLDGVND+ HA QL L++
Sbjct: 226 ALRDNLVPLNKKYPIAELLEACTRYQASAPRDFITFEYCMLDGVNDQPAHARQLVALVQA 285
Query: 292 -----FQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGA 346
NLIPFNP S + S +V++F KIL + I TTVRK G DI A
Sbjct: 286 HAARGLSCKFNLIPFNPF-PASGLKRSDMPQVAAFAKILMDA-GIVTTVRKTRGDDIDAA 343
Query: 347 CGQLVVNLPDK 357
CGQL ++ D+
Sbjct: 344 CGQLAGDVQDR 354
>gi|416839262|ref|ZP_11902656.1| ribosomal RNA large subunit methyltransferase N [Staphylococcus
aureus O11]
gi|323440993|gb|EGA98700.1| ribosomal RNA large subunit methyltransferase N [Staphylococcus
aureus O11]
Length = 364
Score = 200 bits (509), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 111/313 (35%), Positives = 175/313 (55%), Gaps = 23/313 (7%)
Query: 44 DEFPSLPSAAYSLLRSKFKPLTSTLHSVVDSSDDVTTKLLVKLQNGGFVEAVIMRYDSSL 103
DE +L LL+ F +TS V S D T K L +LQ+G +E V+MR+D
Sbjct: 59 DEMTNLSKDLRQLLKDNF-TVTSLTTVVKQESKDGTIKFLFELQDGYTIETVLMRHDYG- 116
Query: 104 GKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRL--- 160
+++C+++QVGC++GC FCA+ G K NL +GEIV Q++ +
Sbjct: 117 -------------NSVCVTTQVGCRIGCTFCASTLGGLKRNLEAGEIVSQVLTVQKALDA 163
Query: 161 --SNIRNVVFMGMGEPLNNYAALVEAVRIMTGL-PFQVSPKRITVSTVGIVHAINKFHSD 217
+ +V MG+GEP NY +++ +RI+ + + ITVST GI+ I F +
Sbjct: 164 TEERVSQIVIMGIGEPFENYDEMMDFLRIVNDDNSLNIGARHITVSTSGIIPRIYDFADE 223
Query: 218 LPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVND 277
+N AVSLHA +VR ++MP RA+ +EKL+ A++ YQ+ + +++ EY + GVND
Sbjct: 224 DIQINFAVSLHAAKDEVRSRLMPINRAYNVEKLIEAIQYYQEKTNRRVTFEYGLFGGVND 283
Query: 278 EEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRK 337
+ +HA +L L++ VNLIP N + + +T+ +D + F+K L+ I T+R+
Sbjct: 284 QLEHARELAHLIKGLNCHVNLIPVNHVPERNYVKTAKND-IFKFEKELK-RLGINATIRR 341
Query: 338 QMGQDISGACGQL 350
+ G DI ACGQL
Sbjct: 342 EQGSDIDAACGQL 354
>gi|148653702|ref|YP_001280795.1| radical SAM protein [Psychrobacter sp. PRwf-1]
gi|205829828|sp|A5WGQ4.1|RLMN_PSYWF RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|148572786|gb|ABQ94845.1| 23S rRNA m(2)A-2503 methyltransferase [Psychrobacter sp. PRwf-1]
Length = 403
Score = 200 bits (509), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 116/299 (38%), Positives = 181/299 (60%), Gaps = 28/299 (9%)
Query: 75 SDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFC 134
S+D T K + K+ G VE V++ D S K NG R TLCISSQVGC + C+FC
Sbjct: 94 SEDGTRKWVFKVAGGSLVETVLIPADDS--KVNG-------RKTLCISSQVGCALDCSFC 144
Query: 135 ATGTMGFKSNLSSGEIVEQL--VHASRL---------SNIRNVVFMGMGEPLNNYAALVE 183
+TG GF+ +L++ EI+ QL +AS + +N+ NVV MGMGEPL NY +V
Sbjct: 145 STGKQGFERDLTAAEIIGQLWVANASYMEGVDSTEWQNNVTNVVMMGMGEPLLNYTPVVS 204
Query: 184 AVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAA 242
++ +M + + +S +R+T+ST G+V + + + D+ + LA+SLHAP ++R +++P
Sbjct: 205 SMGLMLSDHAYGLSKRRVTLSTSGVVPKMYELYKDI-DVALAISLHAPNDELRNELVPIN 263
Query: 243 RAFPLEKLMNALKEYQKNS----QQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNL 298
+ +PL +L+ A K Y ++ ++ + IEY+ML GVND ++HA QL LL+ +NL
Sbjct: 264 KKYPLSELIAAAKAYVHDNNPRHKKHVTIEYVMLAGVNDSDEHAQQLVALLDGLPSKINL 323
Query: 299 IPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDK 357
IPFNP + + SS++++ +F IL + T+R+ G DI ACGQLV + D+
Sbjct: 324 IPFNPFPH-APYDRSSNNRIHAFSNILNNA-GFVCTIRQTRGDDIDAACGQLVGQVADR 380
>gi|29829163|ref|NP_823797.1| ribosomal RNA large subunit methyltransferase N [Streptomyces
avermitilis MA-4680]
gi|81719951|sp|Q82JY3.1|RLMN_STRAW RecName: Full=Probable dual-specificity RNA methyltransferase RlmN;
AltName: Full=23S rRNA
(adenine(2503)-C(2))-methyltransferase; AltName:
Full=23S rRNA m2A2503 methyltransferase; AltName:
Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=tRNA (adenine(37)-C(2))-methyltransferase;
AltName: Full=tRNA m2A37 methyltransferase
gi|29606269|dbj|BAC70332.1| hypothetical protein SAV_2621 [Streptomyces avermitilis MA-4680]
Length = 368
Score = 200 bits (509), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 116/325 (35%), Positives = 177/325 (54%), Gaps = 33/325 (10%)
Query: 44 DEFPSLPSAAYSLLRSKFKPLTSTLHSVVDSSDDVTTKLLVKLQNGGFVEAVIMRYDSSL 103
+++ +P+ + + L+ P T+ + + D T K L +L +G VE+V+MRY
Sbjct: 60 EQWTDIPAGSRAKLQEALLPDLMTVVRHLSTDQDTTRKTLWRLFDGTLVESVLMRYPD-- 117
Query: 104 GKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRL--- 160
R T+CISSQ GC M C FCATG G NLS+GEIV Q+V R
Sbjct: 118 ------------RVTMCISSQAGCGMNCPFCATGQAGLDRNLSTGEIVHQIVDGMRALRD 165
Query: 161 -------SNIRNVVFMGMGEPLNNYAALVEAVRIMT-----GLPFQVSPKRITVSTVGIV 208
+ + N+VFMGMGEPL NY +V A+R +T GL +S + ITVSTVG+V
Sbjct: 166 GEIPGGPARLSNIVFMGMGEPLANYKRVVGAIRALTDPEPDGL--GLSQRGITVSTVGLV 223
Query: 209 HAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIE 268
AI++F + LA+SLHAP ++R ++P + + ++++A EY S +++ IE
Sbjct: 224 PAIHRFADEGFKCRLAISLHAPDDELRDTLVPVNTRWKVREVLDAGWEYAARSGRRLSIE 283
Query: 269 YIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGS 328
Y ++ +ND+ +LG++L+ V VNLIP NP + +D+ + + I +
Sbjct: 284 YALIRDINDQAWRGDRLGRMLKGRPVHVNLIPLNPTPGSKWTASRPEDEKAFVEAI--AA 341
Query: 329 YNIRTTVRKQMGQDISGACGQLVVN 353
+ + TVR GQ+I GACGQL
Sbjct: 342 HGVPVTVRDTRGQEIDGACGQLAAT 366
>gi|450107147|ref|ZP_21860887.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
mutans SF14]
gi|450143366|ref|ZP_21873405.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
mutans 1ID3]
gi|450160965|ref|ZP_21880293.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
mutans 66-2A]
gi|449152325|gb|EMB56035.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
mutans 1ID3]
gi|449222315|gb|EMC22044.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
mutans SF14]
gi|449239427|gb|EMC38150.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
mutans 66-2A]
Length = 361
Score = 200 bits (509), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 120/356 (33%), Positives = 192/356 (53%), Gaps = 34/356 (9%)
Query: 22 GIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKF--KPLTSTLHSVVDSSDDVT 79
G K+ IW ++ ++E +L +LL F PL +V S D T
Sbjct: 21 GEKKFRATQIWDWLYRKRVQSFEEMTNLSKDFIALLNENFLVNPLK---QRIVQESADGT 77
Query: 80 TKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTM 139
K L +L +G +E V+MR L ++C+++QVGC +GC FCA+G +
Sbjct: 78 VKYLFELPDGMLIETVLMRQHYGL--------------SVCVTTQVGCNIGCTFCASGLI 123
Query: 140 GFKSNLSSGEIVEQLVHASRL-------SNIRNVVFMGMGEPLNNYAALVEAVRIMT--- 189
+ +L++GEI Q++ + I +VV MG+GEP +NY +++ +R +
Sbjct: 124 KKQRDLNNGEITAQIMLVQKYFDERGQGERISHVVVMGIGEPFDNYDNVLKFLRTINDDN 183
Query: 190 GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEK 249
GL + + ITVST G+ H I F ++ +NLAVSLHAP ++R IM R+FPLEK
Sbjct: 184 GLA--IGARHITVSTSGLAHKIRDFANEGVQVNLAVSLHAPNNELRSSIMRINRSFPLEK 241
Query: 250 LMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVV--VNLIPFNPIGSV 307
L A++ Y + + +++ EYIML+GVND ++A +L L + + + VNLIP+NP+
Sbjct: 242 LFAAIEYYIETTNRRVTFEYIMLNGVNDNPENAQELADLTKKIRKLSYVNLIPYNPVTEH 301
Query: 308 SQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDKISAKST 363
Q+ S ++V +F +L+ + + VR++ G DI ACGQL N + K+T
Sbjct: 302 DQYSRSPKERVDAFYNVLKKN-GVNCVVRQEHGTDIDAACGQLRSNTMKRDREKAT 356
>gi|260221248|emb|CBA29622.1| Ribosomal RNA large subunit methyltransferase N [Curvibacter
putative symbiont of Hydra magnipapillata]
Length = 466
Score = 200 bits (509), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 135/364 (37%), Positives = 192/364 (52%), Gaps = 35/364 (9%)
Query: 9 FDGGIIRAEFEKAGIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLR--SKFKPLTS 66
FD + A E G K+ ++++V + ++D+ L + LR ++ + L
Sbjct: 8 FDLEGLAAFCESLGEKKFRATQLFRWVHQKGASQFDDMSDLAKSLRDKLRGHAEVRALPV 67
Query: 67 TLHSVVDSSDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVG 126
+ S D T K L + NG VE V + P R TLCISSQ G
Sbjct: 68 ITQHI---SADGTIKWLFDVGNGDAVETVFI--------------PESDRGTLCISSQAG 110
Query: 127 CKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN---------IRNVVFMGMGEPLNN 177
C +GC FC+TG GF NL + EI+ QL A I NVV MGMGEPL N
Sbjct: 111 CAVGCRFCSTGHQGFSRNLKTWEILAQLWFAEHFLRSHLGVSDRVISNVVMMGMGEPLQN 170
Query: 178 YAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRC 236
Y ALV A+++M + +S +R+TVST G+V +++ D P + LAVSLHAP +R
Sbjct: 171 YVALVPALKVMLDDHGYGLSRRRVTVSTSGVVPMMDRLGEDCP-VALAVSLHAPEDSLRD 229
Query: 237 QIMPAARAFPLEKLMNALKEYQKNSQQK-IFIEYIMLDGVNDEEQHAHQLGKLLETFQV- 294
++P R +PL++LM A + Y ++ + I EY MLDGVND +HA L +L++ V
Sbjct: 230 NLVPLNRKYPLKELMEACRRYLAHAPRDFITFEYCMLDGVNDHPEHAKLLLQLVKESGVP 289
Query: 295 -VVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVN 353
NLIPFNP + R SS++ V +F +IL + TT+RK G DI ACGQL +
Sbjct: 290 CKFNLIPFNPFPASGLLR-SSNNAVQAFARILVDG-GLVTTIRKTRGDDIDAACGQLAGD 347
Query: 354 LPDK 357
+ D+
Sbjct: 348 VKDR 351
>gi|218295831|ref|ZP_03496611.1| radical SAM enzyme, Cfr family [Thermus aquaticus Y51MC23]
gi|218243569|gb|EED10097.1| radical SAM enzyme, Cfr family [Thermus aquaticus Y51MC23]
Length = 349
Score = 200 bits (509), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 115/300 (38%), Positives = 170/300 (56%), Gaps = 24/300 (8%)
Query: 75 SDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFC 134
S D + K L L +G EAV M Y + R T+C+SS VGC GC FC
Sbjct: 65 SKDGSVKYLFTLLDGKKTEAVYMPYKN--------------RKTVCLSSMVGCPAGCTFC 110
Query: 135 ATGTMGFKSNLSSGEIVEQLV---HASRLS--NIRNVVFMGMGEPLNNYAALVEAVRIMT 189
ATG +GF NL++ EI+ QL+ H LS IRNVV MGMGEPL N +++A+R+M
Sbjct: 111 ATGALGFGRNLTAAEILSQLLAIAHHQGLSPREIRNVVLMGMGEPLLNLTNVLKAIRVML 170
Query: 190 G-LPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLE 248
+SP+RIT+STVGI I + + G+ LA+SLHAP + R +I+P A +P+
Sbjct: 171 HPKALAMSPRRITLSTVGIPRGILRLAEEDVGVRLALSLHAPDDETRRKIIPTAHRYPIA 230
Query: 249 KLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVS 308
++M A++ Y + +++++ EY +L G+ND A L KLL+ VNLIPFNP + +
Sbjct: 231 EIMAAVRRYYERTKRRVTFEYTLLKGLNDHLWQARLLAKLLKGISAHVNLIPFNPWEN-A 289
Query: 309 QFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDKISAKSTPPVTD 368
+ + +F + LR + T++R G+D+ ACGQL + P ++ TP + D
Sbjct: 290 PVEGTPKAGILAFAEELR-RLGVSTSIRWSRGRDVGAACGQLALKAPKALT--FTPLLED 346
>gi|182435651|ref|YP_001823370.1| ribosomal RNA large subunit methyltransferase N [Streptomyces
griseus subsp. griseus NBRC 13350]
gi|205829903|sp|B1VYT2.1|RLMN_STRGG RecName: Full=Probable dual-specificity RNA methyltransferase RlmN;
AltName: Full=23S rRNA
(adenine(2503)-C(2))-methyltransferase; AltName:
Full=23S rRNA m2A2503 methyltransferase; AltName:
Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=tRNA (adenine(37)-C(2))-methyltransferase;
AltName: Full=tRNA m2A37 methyltransferase
gi|178464167|dbj|BAG18687.1| conserved hypothetical protein [Streptomyces griseus subsp. griseus
NBRC 13350]
Length = 368
Score = 200 bits (509), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 118/323 (36%), Positives = 174/323 (53%), Gaps = 33/323 (10%)
Query: 45 EFPSLPSAAYSLLRSKFKPLTSTLHSVVDSSDDVTTKLLVKLQNGGFVEAVIMRYDSSLG 104
E+ ++P+ + L P ++ + DD T K L KL +G VE+V+MRY
Sbjct: 61 EWTNIPAGSREKLAEALFPDLMSVMRHISCDDDTTRKTLWKLHDGTLVESVLMRYPD--- 117
Query: 105 KYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRL---- 160
R T+CISSQ GC M C FCATG G NLS+ EIV Q+V R
Sbjct: 118 -----------RVTMCISSQAGCGMNCPFCATGQAGLDRNLSTAEIVHQIVDGMRALRDG 166
Query: 161 ------SNIRNVVFMGMGEPLNNYAALVEAVRIMT-----GLPFQVSPKRITVSTVGIVH 209
+ + N+VFMGMGEPL NY +V A+R +T GL +S + ITVSTVG+V
Sbjct: 167 EVPGGPARLSNIVFMGMGEPLANYNRVVGAIRRLTDPEPDGL--GLSQRGITVSTVGLVP 224
Query: 210 AINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEY 269
A+ +F + LAVSLHAP ++R ++P + + ++++A EY S ++I IEY
Sbjct: 225 AMLRFADEGFKCRLAVSLHAPDDELRDTLVPVNTRWNVREVLDAAWEYADKSGRRISIEY 284
Query: 270 IMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSY 329
++ +ND+ +LG+LL+ +V VNLIP NP + +D+ + + + ++
Sbjct: 285 ALIRDINDQAWRGDRLGRLLKGKRVHVNLIPLNPTPGSKWTASRPEDEKAFVEAV--AAH 342
Query: 330 NIRTTVRKQMGQDISGACGQLVV 352
+ TVR GQ+I GACGQL
Sbjct: 343 GVPVTVRDTRGQEIDGACGQLAA 365
>gi|387927083|ref|ZP_10129762.1| ribosomal RNA large subunit methyltransferase N [Bacillus
methanolicus PB1]
gi|387589227|gb|EIJ81547.1| ribosomal RNA large subunit methyltransferase N [Bacillus
methanolicus PB1]
Length = 363
Score = 200 bits (509), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 112/328 (34%), Positives = 186/328 (56%), Gaps = 27/328 (8%)
Query: 31 IWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHSVVDSSDDVTTKLLVKLQNGG 90
I+ ++ + + +E +LP +L+ F LT+ + +S D T K L +L +G
Sbjct: 45 IFDWLYKKRVSDIEEMSNLPKTLREMLKDHF-TLTTLKTIIKQTSLDGTIKFLFELHDGY 103
Query: 91 FVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEI 150
+E V+MR+D +++C+++QVGC++GC FCA+ G K NL +GEI
Sbjct: 104 SIETVLMRHDYG--------------NSVCVTTQVGCRIGCTFCASTLGGLKRNLEAGEI 149
Query: 151 VEQLVHASRL-----SNIRNVVFMGMGEPLNNYAALVEAVRIMT---GLPFQVSPKRITV 202
V Q+V + + +VV MG+GEP +NY ++ ++I+ GL + + ITV
Sbjct: 150 VAQVVKVQQALDETGERVSSVVIMGIGEPFDNYDQMISFLKIINHDKGL--NIGARHITV 207
Query: 203 STVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQ 262
ST GI+ I +F + +N A+SLHAP ++R +MP RA+ L LM A++ Y + +
Sbjct: 208 STSGIIPKIYQFADENMQINFAISLHAPNTELRSSLMPINRAYKLPDLMKAVRYYVEKTG 267
Query: 263 QKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQ 322
+++ EY + GVND+E+HA +L KL++ + VNLIP N + + RT +++ F+
Sbjct: 268 RRVSFEYGLFGGVNDQEEHAEELAKLIKGIKCHVNLIPVNYVPERNYVRTPR-NQIFKFE 326
Query: 323 KILRGSYNIRTTVRKQMGQDISGACGQL 350
K L+ + I T+R++ G DI ACGQL
Sbjct: 327 KTLK-KHGINVTIRREHGHDIDAACGQL 353
>gi|262374935|ref|ZP_06068169.1| ribosomal RNA large subunit methyltransferase N [Acinetobacter
lwoffii SH145]
gi|262309948|gb|EEY91077.1| ribosomal RNA large subunit methyltransferase N [Acinetobacter
lwoffii SH145]
gi|407007098|gb|EKE22852.1| hypothetical protein ACD_6C00703G0004 [uncultured bacterium]
Length = 411
Score = 200 bits (509), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 118/302 (39%), Positives = 179/302 (59%), Gaps = 32/302 (10%)
Query: 75 SDDVTTKLLVKLQNG--GFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCN 132
S D T K + ++ +G VE V++ + G R TLCISSQVGC + C+
Sbjct: 101 SKDGTRKWVFRVGDGEGSLVETVLIPAEHR----------SGLRRTLCISSQVGCALDCS 150
Query: 133 FCATGTMGFKSNLSSGEIVEQLVHAS-----------RLSNIRNVVFMGMGEPLNNYAAL 181
FC+TG GF+ +L+ EI+ QL A+ R ++ NVV MGMGEPL NY A+
Sbjct: 151 FCSTGKQGFQRDLTQAEIIGQLWMANYSYMEDVPVLERERSVTNVVMMGMGEPLLNYDAV 210
Query: 182 VEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMP 240
+ ++RIM + +S +R+T+ST G+V I++ D+ + LA+SLHAP ++R +++P
Sbjct: 211 LNSMRIMLDDFAYGMSKRRVTLSTSGVVPKIDQMVKDI-DVALAISLHAPNDELRNELVP 269
Query: 241 AARAFPLEKLMNALKEY-----QKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVV 295
+ +PLE+L+ A + Y ++S++ + IEY+MLDGVND +HA Q+ KLL+
Sbjct: 270 INKKYPLEQLIAACQRYIAKDGNESSRKHVTIEYVMLDGVNDHPEHAQQMIKLLKNLPSK 329
Query: 296 VNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLP 355
+NLIPFNP R SS +++ SFQK L + + T+R+ G DI ACGQLV +
Sbjct: 330 INLIPFNPFPHAPYGR-SSRNRIISFQKTLSDAGFV-CTIRQTRGDDIDAACGQLVGQVA 387
Query: 356 DK 357
D+
Sbjct: 388 DR 389
>gi|256853566|ref|ZP_05558931.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecalis T8]
gi|256710509|gb|EEU25552.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecalis T8]
Length = 357
Score = 200 bits (509), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 118/345 (34%), Positives = 185/345 (53%), Gaps = 30/345 (8%)
Query: 18 FEKAGIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHSVVDSSDD 77
F G K+ +W+++ + E ++ + +LL F L +V + D
Sbjct: 18 FLAHGEKKFRATQVWEWLYTKRVASFSEMSNISKSLMTLLEENF-SLNPLKQVIVQEAQD 76
Query: 78 VTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATG 137
T K L +L + +E V+MR + L ++C+++QVGC +GC FCA+G
Sbjct: 77 GTVKYLFELPDKNMIETVLMRQEYGL--------------SVCVTTQVGCNIGCTFCASG 122
Query: 138 TMGFKSNLSSGEIVEQLVHASRLSNIR-------NVVFMGMGEPLNNYAALVEAVRIMT- 189
+ + +L++GEIV +++ + R +VV MG+GEP +NY ++ +R +
Sbjct: 123 LLKKQRDLTAGEIVAKIMWVQHYFDERGLDERVSHVVVMGIGEPFDNYVNVMNFLRTIND 182
Query: 190 --GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPL 247
GL + + ITVST G+V I +F +NLA+SLHAP +VR IM R+FP+
Sbjct: 183 DKGLA--IGARHITVSTSGLVPKIREFADSGLQVNLAISLHAPNNEVRTLIMRINRSFPI 240
Query: 248 EKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVV--VNLIPFNPIG 305
EKLM A+ EY + + +++ EYIML VND +HA QL LL + + VNLIP+NP+
Sbjct: 241 EKLMAAIDEYIEKTNRRVTFEYIMLSQVNDRPEHAQQLADLLRNKKKLSYVNLIPYNPVS 300
Query: 306 SVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 350
Q+ SS + V F +L+ + I +RK+ G DI ACGQL
Sbjct: 301 EHDQYSRSSKEAVLKFYDVLKKN-GINCVIRKEHGTDIDAACGQL 344
>gi|440681177|ref|YP_007155972.1| 23S rRNA m(2)A-2503 methyltransferase [Anabaena cylindrica PCC
7122]
gi|428678296|gb|AFZ57062.1| 23S rRNA m(2)A-2503 methyltransferase [Anabaena cylindrica PCC
7122]
Length = 356
Score = 200 bits (509), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 116/287 (40%), Positives = 168/287 (58%), Gaps = 20/287 (6%)
Query: 66 STLHSVVDSSDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQV 125
S+LH + DD T K L+KL +G VE V + P R T+C+S+QV
Sbjct: 83 SSLHYRSVAPDD-TVKYLLKLADGEIVETVGI--------------PSDKRLTVCVSTQV 127
Query: 126 GCKMGCNFCATGTMGFKSNLSSGEIVEQL--VHASRLSNIRNVVFMGMGEPLNNYAALVE 183
GC M C+FCATG G+K NLS EIV+Q+ V + NVVFMGMGEPL N ++
Sbjct: 128 GCPMACDFCATGKGGYKRNLSCAEIVDQVLTVQEDFQQRVSNVVFMGMGEPLLNTENVIS 187
Query: 184 AVRIMTGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAAR 243
A++ + + + +TVSTVGI I + L + LAVSLHAP Q +R Q++P+A+
Sbjct: 188 AIKSINQ-DVGIGARSLTVSTVGIRDRIRQLAEHLFQITLAVSLHAPNQALREQLIPSAK 246
Query: 244 AFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNP 303
+P+E L++ +EY + + +++ EYI+L GVND +HA +L K L FQ VNLIP+NP
Sbjct: 247 PYPIEDLLDECREYVEITGRRVTFEYILLAGVNDLPEHALELSKRLRGFQSHVNLIPYNP 306
Query: 304 IGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 350
I V ++ + D++ +F +L+ N +VR G + ACGQL
Sbjct: 307 IEEVD-YKRPNRDRIQAFVNVLQ-QQNTAVSVRYSRGLEADAACGQL 351
>gi|261405801|ref|YP_003242042.1| ribosomal RNA large subunit methyltransferase N [Paenibacillus sp.
Y412MC10]
gi|329926635|ref|ZP_08281048.1| 23S rRNA m2A2503 methyltransferase [Paenibacillus sp. HGF5]
gi|261282264|gb|ACX64235.1| radical SAM enzyme, Cfr family [Paenibacillus sp. Y412MC10]
gi|328939176|gb|EGG35539.1| 23S rRNA m2A2503 methyltransferase [Paenibacillus sp. HGF5]
Length = 346
Score = 200 bits (509), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 114/325 (35%), Positives = 181/325 (55%), Gaps = 25/325 (7%)
Query: 32 WKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHSVVDSSDDVTTKLLVKLQNGGF 91
W YV + N ++ E +L + L +F +T T + ++S D T K L L +
Sbjct: 33 WLYV-KRVN-DFAEMTNLSKELRAKLEQEFSFVTLTEITKLESKDG-TVKFLFGLHDDHA 89
Query: 92 VEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIV 151
+E VIMR++ +++C+++QVGC++GC FCA+ G K NL+SGEIV
Sbjct: 90 IETVIMRHNYG--------------NSICVTTQVGCRIGCTFCASTLGGLKRNLTSGEIV 135
Query: 152 EQLVHASRL-----SNIRNVVFMGMGEPLNNYAALVEAVRIMTGLP-FQVSPKRITVSTV 205
Q+V A ++ + ++V MG GEP NY A ++ +R M + + ITVST
Sbjct: 136 AQVVQAQKILDKTGERVSSIVIMGSGEPFENYEATMKFLRTMIHEKGLNIGQRHITVSTS 195
Query: 206 GIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKI 265
GIV I KF + +NLA+S+HAP +R ++MP R FP + ++ +L+ YQ + ++I
Sbjct: 196 GIVPNIYKFTEEDTQINLAISIHAPNDKLRSKLMPVNRRFPFDDVIESLRYYQAKTGRRI 255
Query: 266 FIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKIL 325
EY ++ GVND+ +HA +L +++ VNLIP N + RTS +D + FQ+ L
Sbjct: 256 TFEYALIGGVNDQVEHAEELADVIKDMNCFVNLIPVNHVPERKYVRTSRND-IFKFQRAL 314
Query: 326 RGSYNIRTTVRKQMGQDISGACGQL 350
+ T+R++ G DI+ ACGQL
Sbjct: 315 -ADKGVNVTIRREQGHDIAAACGQL 338
>gi|403068738|ref|ZP_10910070.1| hypothetical protein ONdio_03989 [Oceanobacillus sp. Ndiop]
Length = 355
Score = 200 bits (509), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 115/341 (33%), Positives = 183/341 (53%), Gaps = 26/341 (7%)
Query: 20 KAGIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHSVVDSSDDVT 79
+ G K+ +W ++ + ++E ++ LL + F L + + S D T
Sbjct: 20 EQGEKRFRADQVWNWLYKKRISNFNEMKNVNKETIELLDNSF-VLHTLGEEIRQESKDGT 78
Query: 80 TKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTM 139
K L KL++G +E V+MR+ L ++C+++QVGC +GC FCA+G +
Sbjct: 79 IKFLFKLEDGNLIETVLMRFHYGL--------------SVCVTTQVGCNIGCTFCASGLL 124
Query: 140 GFKSNLSSGEIVEQLV----HASRLSN---IRNVVFMGMGEPLNNYAALVEAVRIMTG-L 191
+LSSGEIVEQ++ H + N + ++V MG+GEPL+N+ L++ + ++
Sbjct: 125 RKSRDLSSGEIVEQIMNVQKHLDTMGNDERVSHIVVMGIGEPLDNFTNLMDFLHVVNDDR 184
Query: 192 PFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLM 251
+ + ITVST G+ H I +F +NLA+SLHAP D+R +IM +AFP+EKLM
Sbjct: 185 GLNIGARHITVSTSGLAHKIYEFADQDLQVNLAISLHAPNNDLRTRIMKINKAFPIEKLM 244
Query: 252 NALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQ--VVVNLIPFNPIGSVSQ 309
A+ Y + ++I EYIML VND + A QL L+ + VNLIP+N +
Sbjct: 245 KAVDYYLEKKNRRITYEYIMLRDVNDHREEAIQLANLINDHRHLAYVNLIPYNTVDEHID 304
Query: 310 FRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 350
++ S + + +F + L+ I VR + G DI ACGQL
Sbjct: 305 YQRSQSESIQAFYETLKDR-GINCGVRWENGADIDAACGQL 344
>gi|219847237|ref|YP_002461670.1| ribosomal RNA large subunit methyltransferase N [Chloroflexus
aggregans DSM 9485]
gi|219541496|gb|ACL23234.1| radical SAM enzyme, Cfr family [Chloroflexus aggregans DSM 9485]
Length = 361
Score = 200 bits (509), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 126/340 (37%), Positives = 182/340 (53%), Gaps = 40/340 (11%)
Query: 31 IWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPL---TSTLHSVVDSSDDVTTKLLVKLQ 87
+++++ N + LP+ LR + L T L V +T K L +L
Sbjct: 31 LYRHLYVNLTASVERMTDLPTT----LRRRLAELPLSTLRLERVQIGDAGLTRKALFRLP 86
Query: 88 NGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSS 147
+G VE V+M Y RST+C+S+Q GC MGC FCATG +G NLSS
Sbjct: 87 DGAVVETVLMVYPD--------------RSTVCVSTQAGCGMGCVFCATGRLGLLRNLSS 132
Query: 148 GEIVEQLVHAS---RLSN-------IRNVVFMGMGEPLNNYAALVEAV-RIMTGLPFQVS 196
GEIV Q + AS R N + N+VFMGMGEP NY +AV R+ F +
Sbjct: 133 GEIVAQAIWASQELRAMNAAGPSGRVTNLVFMGMGEPFANYDRWWQAVERLHDPQGFNLG 192
Query: 197 PKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKE 256
+ +TVSTVG+V I + ++ +NLA+SLHAP +R ++MP R +P+ +LM A ++
Sbjct: 193 ARSMTVSTVGLVKGIERLANERLPINLAISLHAPDDTLRSELMPVNRRYPIAELMAATRQ 252
Query: 257 YQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLET------FQVVVNLIPFNPIGSVSQF 310
Y +++++ EY++L G ND A L +LL V VNLIP+NP+
Sbjct: 253 YIAKTRRRVSFEYVLLQGKNDHPHQAIALARLLRREAPPGPILVHVNLIPWNPVPGTPLG 312
Query: 311 RTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 350
R S ++V++FQ+IL Y I TVR + G +I+ ACGQL
Sbjct: 313 R-SEWERVNAFQQIL-TDYGIPCTVRVERGVEIAAACGQL 350
>gi|339640348|ref|ZP_08661792.1| 23S rRNA m2A2503 methyltransferase [Streptococcus sp. oral taxon
056 str. F0418]
gi|339453617|gb|EGP66232.1| 23S rRNA m2A2503 methyltransferase [Streptococcus sp. oral taxon
056 str. F0418]
Length = 362
Score = 200 bits (509), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 121/350 (34%), Positives = 190/350 (54%), Gaps = 34/350 (9%)
Query: 18 FEKAGIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKF--KPLTSTLHSVVDSS 75
E G K+ IW+++ ++E +L + L +F PL +V S
Sbjct: 17 IEAQGEKKFRATQIWEWLYRKRVQSFEEMTNLSKDLIAKLDDQFVVNPLK---QRIVQES 73
Query: 76 DDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCA 135
D T K L +L +G +E V+MR L ++C+++QVGC +GC FCA
Sbjct: 74 ADGTVKYLFELPDGMLIETVLMRQHYGL--------------SVCVTTQVGCNIGCTFCA 119
Query: 136 TGTMGFKSNLSSGEIVEQLVHASRLSNIR-------NVVFMGMGEPLNNYAALVEAVRIM 188
+G + + +L++GEIV Q++ + + R ++V MG+GEP +NY +++ VR +
Sbjct: 120 SGLIKKQRDLNNGEIVAQIMLVQKYFDERGQDERVSHIVVMGIGEPFDNYDNVLKFVRTV 179
Query: 189 T---GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAF 245
GL + + ITVST G+ H I F + +NLAVSLHAP D+R IM R+F
Sbjct: 180 NDDKGLA--IGARHITVSTSGLAHKIRDFADEGVQVNLAVSLHAPNNDLRTSIMRINRSF 237
Query: 246 PLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVV--VNLIPFNP 303
P+EKL A++ Y K + +++ EYIML+ VND + A +L +LL+ + + VNLIP+NP
Sbjct: 238 PIEKLFEAIEYYIKTTNRRVTFEYIMLNEVNDGVEQAKELAELLKNIKKLSYVNLIPYNP 297
Query: 304 IGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVN 353
+ Q+ S ++V +F L+ + I VR++ G DI ACGQL N
Sbjct: 298 VSEHDQYSRSPKERVMAFYDTLKKN-GINCVVRQEHGTDIDAACGQLRSN 346
>gi|329117105|ref|ZP_08245822.1| 23S rRNA m2A2503 methyltransferase [Streptococcus parauberis NCFD
2020]
gi|333905387|ref|YP_004479258.1| radical SAM protein [Streptococcus parauberis KCTC 11537]
gi|326907510|gb|EGE54424.1| 23S rRNA m2A2503 methyltransferase [Streptococcus parauberis NCFD
2020]
gi|333120652|gb|AEF25586.1| radical SAM superfamily protein [Streptococcus parauberis KCTC
11537]
gi|456371366|gb|EMF50262.1| Ribosomal RNA large subunit methyltransferase N [Streptococcus
parauberis KRS-02109]
Length = 361
Score = 200 bits (509), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 121/350 (34%), Positives = 194/350 (55%), Gaps = 34/350 (9%)
Query: 22 GIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKF--KPLTSTLHSVVDSSDDVT 79
G K+ IW ++ + ++E ++ +LL F PL +V S D T
Sbjct: 21 GQKKFRATQIWDWLYKKRVDSFEEMTNISKDFIALLNDNFCVNPLK---QRIVQESADGT 77
Query: 80 TKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTM 139
K L +L +G +E V+MR ++ G ++C+++QVGC +GC FCA+G +
Sbjct: 78 VKYLFELPDGMLIETVLMR------QHYG--------HSVCVTTQVGCNIGCTFCASGLI 123
Query: 140 GFKSNLSSGEIVEQLVHASRLSNIR-------NVVFMGMGEPLNNYAALVEAVRIMT--- 189
+ +L+SGEI Q++ + + R +VV MG+GEP +NY +++ +R +
Sbjct: 124 KKQRDLNSGEITAQIMLVQKYFDERGKDERVSHVVVMGIGEPFDNYTNVMKFLRTINDDN 183
Query: 190 GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEK 249
GL + + ITVST G+ H I +F ++ +NLAVSLHAP D+R QIM R+FPLEK
Sbjct: 184 GLA--IGARHITVSTSGLAHKIREFANEGVQVNLAVSLHAPNNDLRSQIMRINRSFPLEK 241
Query: 250 LMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVV--VNLIPFNPIGSV 307
L A++ Y + + +++ EYIML+ VND + A +L L + + + VNLIP+NP+
Sbjct: 242 LFAAIEYYIETTNRRVTFEYIMLNEVNDGVEQAKELADLTKNIRKLCYVNLIPYNPVSEH 301
Query: 308 SQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDK 357
Q+ S ++VS+F +L+ + + VR++ G DI ACGQL N K
Sbjct: 302 DQYSRSPKERVSAFYDVLKKT-GVNCVVRQEHGTDIDAACGQLRSNTMKK 350
>gi|228474965|ref|ZP_04059693.1| radical SAM enzyme, Cfr family [Staphylococcus hominis SK119]
gi|314936620|ref|ZP_07843967.1| radical SAM enzyme, Cfr family [Staphylococcus hominis subsp.
hominis C80]
gi|228270950|gb|EEK12338.1| radical SAM enzyme, Cfr family [Staphylococcus hominis SK119]
gi|313655239|gb|EFS18984.1| radical SAM enzyme, Cfr family [Staphylococcus hominis subsp.
hominis C80]
Length = 364
Score = 200 bits (509), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 114/314 (36%), Positives = 176/314 (56%), Gaps = 25/314 (7%)
Query: 44 DEFPSLPSAAYSLLRSKFKPLTSTLHSVV-DSSDDVTTKLLVKLQNGGFVEAVIMRYDSS 102
DE +L LL+ F + +TL +VV S D T K L +LQ+G +E V+MR+D
Sbjct: 59 DEMTNLSKDLRQLLKDNF--VMTTLTTVVKQESKDGTIKFLFELQDGYTIETVLMRHDYG 116
Query: 103 LGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN 162
+++C+++QVGC++GC FCA+ G K NL +GEIV Q++ + +
Sbjct: 117 --------------NSVCVTTQVGCRIGCTFCASTLGGLKRNLEAGEIVSQVLTVQKALD 162
Query: 163 IRN-----VVFMGMGEPLNNYAALVEAVRIMTGL-PFQVSPKRITVSTVGIVHAINKFHS 216
N +V MG+GEP NY +++ ++I+ + + ITVST GI+ I F
Sbjct: 163 ATNERVSQIVIMGIGEPFENYDEMMDFLKIVNDDNSLNIGARHITVSTSGIIPRIYDFAD 222
Query: 217 DLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVN 276
+ +N AVSLHA ++R ++MP RA+ + KLM A+K YQ+ + ++I EY + GVN
Sbjct: 223 EQIQINFAVSLHAAKDEIRSKLMPINRAYNVGKLMEAIKYYQEKTNRRITFEYGLFGGVN 282
Query: 277 DEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVR 336
D+ +HA L L++ VNLIP N + + +T DD + F+K L+ I T+R
Sbjct: 283 DQLEHARDLAHLIKDLNCHVNLIPVNHVPERNYVKTPKDD-IFKFEKELK-RLGINATIR 340
Query: 337 KQMGQDISGACGQL 350
++ G DI ACGQL
Sbjct: 341 REQGSDIDAACGQL 354
>gi|425736792|ref|ZP_18855068.1| ribosomal RNA large subunit methyltransferase N [Staphylococcus
massiliensis S46]
gi|425483264|gb|EKU50416.1| ribosomal RNA large subunit methyltransferase N [Staphylococcus
massiliensis S46]
Length = 364
Score = 200 bits (509), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 115/329 (34%), Positives = 184/329 (55%), Gaps = 29/329 (8%)
Query: 31 IWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHSVV-DSSDDVTTKLLVKLQNG 89
I++++ E ++E +L LL F + +TL +VV S D T K L +LQ+G
Sbjct: 46 IFEWLYEKRVNSFEEMTNLSKDMRQLLEDNF--VITTLETVVRQESRDGTIKFLFELQDG 103
Query: 90 GFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGE 149
+E V+MR+ +++C+++QVGC++GC FCA+ G K NL +GE
Sbjct: 104 YTIETVLMRHQYG--------------NSVCVTTQVGCRIGCTFCASTLGGLKRNLEAGE 149
Query: 150 IVEQLVHASRL-----SNIRNVVFMGMGEPLNNYAALVEAVRIMT---GLPFQVSPKRIT 201
IV Q++ + + VV MG+GEP NY +++ ++I+ GL + + IT
Sbjct: 150 IVSQVLTVQKALDETDERVSQVVIMGIGEPFENYDEMMDFLKIINHDNGL--NIGARHIT 207
Query: 202 VSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNS 261
VST GI+ I F + +N A+SLH ++R ++MP RA+ ++KLM AL+ YQ+ +
Sbjct: 208 VSTSGIIPRIYDFAEESLQINFALSLHGANNEIRSRLMPINRAYDIDKLMEALEYYQEQT 267
Query: 262 QQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSF 321
++I EY + GVND+ +HA +L L++ VNLIP N + + +TS DD + F
Sbjct: 268 NRRITFEYGLFGGVNDQVEHARELAALIKHLNCHVNLIPVNHVPERNYVKTSKDD-IFKF 326
Query: 322 QKILRGSYNIRTTVRKQMGQDISGACGQL 350
+K L+ I T+R+ G+DI ACGQL
Sbjct: 327 EKELK-RLGINATIRRNQGEDIDAACGQL 354
>gi|418531067|ref|ZP_13096986.1| radical SAM enzyme, Cfr family protein [Comamonas testosteroni ATCC
11996]
gi|371451776|gb|EHN64809.1| radical SAM enzyme, Cfr family protein [Comamonas testosteroni ATCC
11996]
Length = 373
Score = 200 bits (509), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 132/368 (35%), Positives = 198/368 (53%), Gaps = 34/368 (9%)
Query: 9 FDGGIIRAEFEKAGIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTL 68
FD + A E+ G K+ +++++ + ++D+ L + L+S+ +T+
Sbjct: 8 FDLEGLTAYCEQLGEKRFRATQLFRWIHQRGASDFDQMTDLAKSLREKLKSRAH-ITALP 66
Query: 69 HSVVDSSDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCK 128
S D T K L + +G VE+V + P R TLC+SSQ GC
Sbjct: 67 VVTEHVSADGTVKWLFDVGDGNAVESVFI--------------PEDDRGTLCVSSQAGCA 112
Query: 129 MGCNFCATGTMGFKSNLSSGEIVEQLVHAS-----RLSN----IRNVVFMGMGEPLNNYA 179
+GC FC+TG GF NL++GEI+ QL +A R I NVV MGMGEPL NY+
Sbjct: 113 VGCRFCSTGHQGFSRNLNTGEILAQLWYAEHSLRKRFGTEDRIISNVVMMGMGEPLQNYS 172
Query: 180 ALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQI 238
ALV A+R+M + +S +R+TVST G+V +++ D + LAVSLHAP +R +
Sbjct: 173 ALVPALRVMLDDHGYGLSRRRVTVSTSGVVPMMDRLSQDC-AVALAVSLHAPNDPLRDNL 231
Query: 239 MPAARAFPLEKLMNALKEYQKNSQQK-IFIEYIMLDGVNDEEQHAHQLGKLLET-----F 292
+P + +P+ +L++A + Y + + + I EY MLDGVND+ +HA QL +L+
Sbjct: 232 VPLNKKYPIAELLDACERYLEFAPRDFITFEYCMLDGVNDQPEHARQLIELVRARGDGRS 291
Query: 293 QVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVV 352
NLIPFNP + R+ S +V+ F +L + I TTVRK G DI ACGQL
Sbjct: 292 WCKFNLIPFNPFPASGLLRSPS-ARVTEFAALLSNA-GIVTTVRKTRGDDIDAACGQLAG 349
Query: 353 NLPDKISA 360
++ D+ A
Sbjct: 350 DVKDRTRA 357
>gi|397649252|ref|YP_006489779.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
mutans GS-5]
gi|449875940|ref|ZP_21782500.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
mutans S1B]
gi|449883595|ref|ZP_21785265.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
mutans SA38]
gi|449893757|ref|ZP_21788903.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
mutans SF12]
gi|449904610|ref|ZP_21792766.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
mutans M230]
gi|449908620|ref|ZP_21793844.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
mutans OMZ175]
gi|449916144|ref|ZP_21796696.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
mutans 15JP3]
gi|449920159|ref|ZP_21798347.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
mutans 1SM1]
gi|449925376|ref|ZP_21800237.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
mutans 4SM1]
gi|449941932|ref|ZP_21805759.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
mutans 11A1]
gi|449948019|ref|ZP_21807780.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
mutans 11SSST2]
gi|449953922|ref|ZP_21809172.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
mutans 4VF1]
gi|449965159|ref|ZP_21811731.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
mutans 15VF2]
gi|449969763|ref|ZP_21813405.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
mutans 2VS1]
gi|449974535|ref|ZP_21815345.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
mutans 11VS1]
gi|449980193|ref|ZP_21817052.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
mutans 5SM3]
gi|449996533|ref|ZP_21823595.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
mutans A9]
gi|450000035|ref|ZP_21824880.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
mutans N29]
gi|450028343|ref|ZP_21832081.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
mutans G123]
gi|450033846|ref|ZP_21833997.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
mutans M21]
gi|450048248|ref|ZP_21839676.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
mutans N34]
gi|450051049|ref|ZP_21840621.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
mutans NFSM1]
gi|450056543|ref|ZP_21842092.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
mutans NLML4]
gi|450064725|ref|ZP_21845440.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
mutans NLML5]
gi|450068017|ref|ZP_21846941.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
mutans NLML9]
gi|450072169|ref|ZP_21848456.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
mutans M2A]
gi|450078200|ref|ZP_21850884.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
mutans N3209]
gi|450082602|ref|ZP_21852445.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
mutans N66]
gi|450092725|ref|ZP_21856197.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
mutans W6]
gi|450109937|ref|ZP_21861797.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
mutans SM6]
gi|450119975|ref|ZP_21865403.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
mutans ST6]
gi|450125384|ref|ZP_21867641.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
mutans U2A]
gi|450137324|ref|ZP_21871563.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
mutans NLML1]
gi|450149420|ref|ZP_21876127.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
mutans 14D]
gi|450165884|ref|ZP_21882054.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
mutans B]
gi|450175273|ref|ZP_21885064.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
mutans SM1]
gi|450180658|ref|ZP_21887353.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
mutans 24]
gi|392602821|gb|AFM80985.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
mutans GS-5]
gi|449151489|gb|EMB55223.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
mutans 11A1]
gi|449155635|gb|EMB59140.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
mutans 15JP3]
gi|449158952|gb|EMB62350.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
mutans 1SM1]
gi|449161640|gb|EMB64821.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
mutans 4SM1]
gi|449168027|gb|EMB70871.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
mutans 11SSST2]
gi|449171383|gb|EMB74047.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
mutans 4VF1]
gi|449171615|gb|EMB74268.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
mutans 15VF2]
gi|449173875|gb|EMB76407.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
mutans 2VS1]
gi|449177211|gb|EMB79521.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
mutans 5SM3]
gi|449178232|gb|EMB80503.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
mutans 11VS1]
gi|449183038|gb|EMB85037.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
mutans A9]
gi|449186279|gb|EMB88118.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
mutans N29]
gi|449195756|gb|EMB97065.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
mutans G123]
gi|449196921|gb|EMB98152.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
mutans M21]
gi|449197060|gb|EMB98277.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
mutans N34]
gi|449202180|gb|EMC03119.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
mutans NFSM1]
gi|449203115|gb|EMC03992.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
mutans NLML5]
gi|449206666|gb|EMC07362.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
mutans NLML4]
gi|449207705|gb|EMC08373.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
mutans NLML9]
gi|449210249|gb|EMC10719.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
mutans N3209]
gi|449211733|gb|EMC12126.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
mutans M2A]
gi|449214320|gb|EMC14605.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
mutans N66]
gi|449217973|gb|EMC17999.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
mutans W6]
gi|449225692|gb|EMC25278.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
mutans SM6]
gi|449230764|gb|EMC30012.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
mutans ST6]
gi|449232567|gb|EMC31675.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
mutans U2A]
gi|449234528|gb|EMC33533.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
mutans 14D]
gi|449235398|gb|EMC34356.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
mutans NLML1]
gi|449240234|gb|EMC38921.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
mutans B]
gi|449247135|gb|EMC45423.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
mutans SM1]
gi|449248065|gb|EMC46328.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
mutans 24]
gi|449249675|gb|EMC47782.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
mutans SA38]
gi|449253328|gb|EMC51286.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
mutans S1B]
gi|449255662|gb|EMC53507.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
mutans SF12]
gi|449259139|gb|EMC56683.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
mutans M230]
gi|449262757|gb|EMC60200.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
mutans OMZ175]
Length = 361
Score = 200 bits (509), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 120/356 (33%), Positives = 192/356 (53%), Gaps = 34/356 (9%)
Query: 22 GIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKF--KPLTSTLHSVVDSSDDVT 79
G K+ IW ++ ++E +L +LL F PL +V S D T
Sbjct: 21 GEKKFRATQIWDWLYRKRVQSFEEMTNLSKDFIALLNENFLVNPLK---QRIVQESADGT 77
Query: 80 TKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTM 139
K L +L +G +E V+MR L ++C+++QVGC +GC FCA+G +
Sbjct: 78 VKYLFELPDGMLIETVLMRQHYGL--------------SVCVTTQVGCNIGCTFCASGLI 123
Query: 140 GFKSNLSSGEIVEQLVHASRL-------SNIRNVVFMGMGEPLNNYAALVEAVRIMT--- 189
+ +L++GEI Q++ + I +VV MG+GEP +NY +++ +R +
Sbjct: 124 KKQRDLNNGEITAQIMLVQKYFDERGQGERISHVVVMGIGEPFDNYDNVLKFLRTINDDN 183
Query: 190 GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEK 249
GL + + ITVST G+ H I F ++ +NLAVSLHAP ++R IM R+FPLEK
Sbjct: 184 GLA--IGARHITVSTSGLAHKIRDFANEGVQVNLAVSLHAPNNELRSSIMRINRSFPLEK 241
Query: 250 LMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVV--VNLIPFNPIGSV 307
L A++ Y + + +++ EYIML+GVND ++A +L L + + + VNLIP+NP+
Sbjct: 242 LFAAIEYYIETTNRRVTFEYIMLNGVNDNPENAQELADLTKKIRKLSYVNLIPYNPVTEH 301
Query: 308 SQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDKISAKST 363
Q+ S ++V +F +L+ + + VR++ G DI ACGQL N + K+T
Sbjct: 302 DQYSRSPKERVDAFYDVLKKN-GVNCVVRQEHGTDIDAACGQLRSNTMKRDREKAT 356
>gi|418620426|ref|ZP_13183230.1| 23S rRNA m2A2503 methyltransferase [Staphylococcus hominis VCU122]
gi|374822556|gb|EHR86576.1| 23S rRNA m2A2503 methyltransferase [Staphylococcus hominis VCU122]
Length = 336
Score = 200 bits (509), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 114/314 (36%), Positives = 176/314 (56%), Gaps = 25/314 (7%)
Query: 44 DEFPSLPSAAYSLLRSKFKPLTSTLHSVV-DSSDDVTTKLLVKLQNGGFVEAVIMRYDSS 102
DE +L LL+ F + +TL +VV S D T K L +LQ+G +E V+MR+D
Sbjct: 31 DEMTNLSKDLRQLLKDNF--VMTTLTTVVKQESKDGTIKFLFELQDGYTIETVLMRHDYG 88
Query: 103 LGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN 162
+++C+++QVGC++GC FCA+ G K NL +GEIV Q++ + +
Sbjct: 89 --------------NSVCVTTQVGCRIGCTFCASTLGGLKRNLEAGEIVSQVLTVQKALD 134
Query: 163 IRN-----VVFMGMGEPLNNYAALVEAVRIMTGL-PFQVSPKRITVSTVGIVHAINKFHS 216
N +V MG+GEP NY +++ ++I+ + + ITVST GI+ I F
Sbjct: 135 ATNERVSQIVIMGIGEPFENYDEMMDFLKIVNDDNSLNIGARHITVSTSGIIPRIYDFAD 194
Query: 217 DLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVN 276
+ +N AVSLHA ++R ++MP RA+ + KLM A+K YQ+ + ++I EY + GVN
Sbjct: 195 EQIQINFAVSLHAAKDEIRSKLMPINRAYNVGKLMEAIKYYQEKTNRRITFEYGLFGGVN 254
Query: 277 DEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVR 336
D+ +HA L L++ VNLIP N + + +T DD + F+K L+ I T+R
Sbjct: 255 DQLEHARDLAHLIKDLNCHVNLIPVNHVPERNYVKTPKDD-IFKFEKELK-RLGINATIR 312
Query: 337 KQMGQDISGACGQL 350
++ G DI ACGQL
Sbjct: 313 REQGSDIDAACGQL 326
>gi|254392089|ref|ZP_05007278.1| conserved hypothetical protein [Streptomyces clavuligerus ATCC
27064]
gi|294815391|ref|ZP_06774034.1| Ribosomal RNA large subunit methyltransferase N [Streptomyces
clavuligerus ATCC 27064]
gi|326443743|ref|ZP_08218477.1| ribosomal RNA large subunit methyltransferase N [Streptomyces
clavuligerus ATCC 27064]
gi|197705765|gb|EDY51577.1| conserved hypothetical protein [Streptomyces clavuligerus ATCC
27064]
gi|294327990|gb|EFG09633.1| Ribosomal RNA large subunit methyltransferase N [Streptomyces
clavuligerus ATCC 27064]
Length = 368
Score = 200 bits (509), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 119/322 (36%), Positives = 174/322 (54%), Gaps = 33/322 (10%)
Query: 46 FPSLPSAAYSLLRSKFKPLTSTLHSVVDSSDDVTTKLLVKLQNGGFVEAVIMRYDSSLGK 105
+ +P+AA L S+ P ++ V +D T K L +L +G VE+V+MRY
Sbjct: 62 WTDIPAAARERLASELLPDLMSVVRHVSCDNDTTRKTLWRLHDGTLVESVLMRYPD---- 117
Query: 106 YNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRL----- 160
R T+CISSQ GC M C FCATG G NLS+ EIV Q+V R
Sbjct: 118 ----------RVTMCISSQAGCGMNCPFCATGQAGLDRNLSTAEIVHQIVDGMRALRDGE 167
Query: 161 -----SNIRNVVFMGMGEPLNNYAALVEAVRIMT-----GLPFQVSPKRITVSTVGIVHA 210
+ + N+VFMGMGEPL NY +V A+R +T GL +S + ITVSTVG+V A
Sbjct: 168 VPGGPARLSNIVFMGMGEPLANYKRVVGAIRRLTDPEPDGL--GLSQRGITVSTVGLVPA 225
Query: 211 INKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYI 270
+ +F + LAVSLHAP ++R ++P + + ++++A EY + S +++ IEY
Sbjct: 226 MLRFADEGFKCRLAVSLHAPDDELRDTLVPVNTRWKVREVLDAAWEYAEKSGRRVSIEYA 285
Query: 271 MLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYN 330
++ +ND LG+LL+ +V VNLIP NP + +D+ + + I ++
Sbjct: 286 LIRDINDHAWRGDLLGRLLKGKRVHVNLIPLNPTPGSKWTASRPEDEKAFVEAI--AAHG 343
Query: 331 IRTTVRKQMGQDISGACGQLVV 352
+ TVR GQ+I GACGQL
Sbjct: 344 VPVTVRDTRGQEIDGACGQLAA 365
>gi|307272756|ref|ZP_07554003.1| radical SAM enzyme, Cfr family [Enterococcus faecalis TX0855]
gi|306510370|gb|EFM79393.1| radical SAM enzyme, Cfr family [Enterococcus faecalis TX0855]
Length = 357
Score = 200 bits (509), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 119/345 (34%), Positives = 185/345 (53%), Gaps = 30/345 (8%)
Query: 18 FEKAGIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHSVVDSSDD 77
F G K+ +W+++ + E ++ + +LL F L +V + D
Sbjct: 18 FLAHGEKKFRATQVWEWLYTKRVASFSEMSNISKSLMTLLEENF-SLNPLKQVIVQEAQD 76
Query: 78 VTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATG 137
T K L +L + +E V+MR + L ++C+++QVGC +GC FCA+G
Sbjct: 77 GTVKYLFELPDKNMIETVLMRQEYGL--------------SVCVTTQVGCNIGCTFCASG 122
Query: 138 TMGFKSNLSSGEIVEQLVHASRLSNIR-------NVVFMGMGEPLNNYAALVEAVRIMT- 189
+ + +L++GEIV Q++ + R +VV MG+GEP +NYA ++ +R +
Sbjct: 123 LLKKQRDLTAGEIVAQIMWVQHYFDERGLDERVSHVVVMGIGEPFDNYANVMNFLRTIND 182
Query: 190 --GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPL 247
GL + + ITVST G+V I +F +NLA+SLHAP +VR IM R+FP+
Sbjct: 183 DKGLA--IGARHITVSTSGLVPKIREFADSGLQVNLAISLHAPNNEVRTSIMRINRSFPI 240
Query: 248 EKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVV--VNLIPFNPIG 305
EKLM A+ EY + + +++ EYIML VND +HA QL LL + + VNLIP+NP+
Sbjct: 241 EKLMAAIDEYIEKTNRRVTFEYIMLSQVNDRPEHAQQLADLLRNKKKLSYVNLIPYNPVS 300
Query: 306 SVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 350
Q+ SS + V F +L+ + I +RK+ G DI A GQL
Sbjct: 301 EHDQYSRSSKEAVLKFYDVLKKN-GINCVIRKEHGTDIDAAFGQL 344
>gi|212639614|ref|YP_002316134.1| ribosomal RNA large subunit methyltransferase N [Anoxybacillus
flavithermus WK1]
gi|212561094|gb|ACJ34149.1| Predicted Fe-S-cluster redox enzyme [Anoxybacillus flavithermus
WK1]
Length = 349
Score = 200 bits (509), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 113/341 (33%), Positives = 196/341 (57%), Gaps = 29/341 (8%)
Query: 19 EKAGIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHSVVD-SSDD 77
E+ G K I++++ + +++ ++P A L F + +TL ++V +S D
Sbjct: 18 EQQGEKPFRATQIFEWLYKKRATSFEDMTNIPKALRERLAEHF--VITTLKTLVQQTSKD 75
Query: 78 VTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATG 137
T K L +L +G +E V+MR+D +++C+++QVGC++GC FCA+
Sbjct: 76 GTMKFLFELHDGYSIETVLMRHDYG--------------NSICVTTQVGCRIGCTFCAST 121
Query: 138 TMGFKSNLSSGEIVEQLVHASRL-----SNIRNVVFMGMGEPLNNYAALVEAVRIMT--- 189
G K NL +GEIV Q+V + + ++V MG+GEP +NY L++ ++I+
Sbjct: 122 LGGLKRNLQAGEIVAQVVKVQKALDETNERVSSIVVMGIGEPFDNYDELIKFLKIVNHPK 181
Query: 190 GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEK 249
GL + + ITVST GI+ I +F + +N A+SLHAP ++R ++MP RA+ L +
Sbjct: 182 GL--HIGARHITVSTSGIIPKIYQFADENMQINFAISLHAPNTELRSKLMPINRAYKLPE 239
Query: 250 LMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQ 309
LM A++ Y + + +++ EY + GVND+ +HA +L +L++ + VNLIP N + +
Sbjct: 240 LMEAVRYYIEKTGRRVTFEYGLFGGVNDQIEHAEELAELIKGLKCHVNLIPVNYVPERNY 299
Query: 310 FRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 350
RT +++ +F+K L+ + I T+R++ G DI ACGQL
Sbjct: 300 VRTPR-EQIFAFEKTLK-KHGINVTIRREQGHDIDAACGQL 338
>gi|387786646|ref|YP_006251742.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
mutans LJ23]
gi|379133047|dbj|BAL69799.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
mutans LJ23]
Length = 361
Score = 200 bits (509), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 120/356 (33%), Positives = 192/356 (53%), Gaps = 34/356 (9%)
Query: 22 GIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKF--KPLTSTLHSVVDSSDDVT 79
G K+ IW ++ ++E +L +LL F PL +V S D T
Sbjct: 21 GEKKFRATQIWDWLYRKRVQSFEEMTNLSKDFIALLNKNFLVNPLK---QRIVQESADGT 77
Query: 80 TKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTM 139
K L +L +G +E V+MR L ++C+++QVGC +GC FCA+G +
Sbjct: 78 VKYLFELPDGMLIETVLMRQHYGL--------------SVCVTTQVGCNIGCTFCASGLI 123
Query: 140 GFKSNLSSGEIVEQLVHASRL-------SNIRNVVFMGMGEPLNNYAALVEAVRIMT--- 189
+ +L++GEI Q++ + I +VV MG+GEP +NY +++ +R +
Sbjct: 124 KKQRDLNNGEITAQIMLVQKYFDERGQGERISHVVVMGIGEPFDNYDNVLKFLRTINDDN 183
Query: 190 GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEK 249
GL + + ITVST G+ H I F ++ +NLAVSLHAP ++R IM R+FPLEK
Sbjct: 184 GLA--IGARHITVSTSGLAHKIRDFANEGVQVNLAVSLHAPNNELRSSIMRINRSFPLEK 241
Query: 250 LMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVV--VNLIPFNPIGSV 307
L A++ Y + + +++ EYIML+GVND ++A +L L + + + VNLIP+NP+
Sbjct: 242 LFAAIEYYIETTNRRVTFEYIMLNGVNDNPENAQELADLTKKIRKLSYVNLIPYNPVTEH 301
Query: 308 SQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDKISAKST 363
Q+ S ++V +F +L+ + + VR++ G DI ACGQL N + K+T
Sbjct: 302 DQYSRSPKERVDAFYDVLKKN-GVNCVVRQEHGTDIDAACGQLRSNTMKRDREKAT 356
>gi|24379004|ref|NP_720959.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
mutans UA159]
gi|449863339|ref|ZP_21778185.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
mutans U2B]
gi|449870255|ref|ZP_21780545.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
mutans 8ID3]
gi|449984109|ref|ZP_21818826.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
mutans NFSM2]
gi|450100044|ref|ZP_21858616.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
mutans SF1]
gi|450169825|ref|ZP_21883203.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
mutans SM4]
gi|81588375|sp|Q8DVG8.1|RLMN_STRMU RecName: Full=Probable dual-specificity RNA methyltransferase RlmN;
AltName: Full=23S rRNA
(adenine(2503)-C(2))-methyltransferase; AltName:
Full=23S rRNA m2A2503 methyltransferase; AltName:
Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=tRNA (adenine(37)-C(2))-methyltransferase;
AltName: Full=tRNA m2A37 methyltransferase
gi|24376896|gb|AAN58265.1|AE014897_11 conserved hypothetical protein [Streptococcus mutans UA159]
gi|449156797|gb|EMB60255.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
mutans 8ID3]
gi|449180577|gb|EMB82730.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
mutans NFSM2]
gi|449220604|gb|EMC20457.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
mutans SF1]
gi|449246682|gb|EMC44980.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
mutans SM4]
gi|449265068|gb|EMC62397.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
mutans U2B]
Length = 361
Score = 200 bits (509), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 120/356 (33%), Positives = 192/356 (53%), Gaps = 34/356 (9%)
Query: 22 GIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKF--KPLTSTLHSVVDSSDDVT 79
G K+ IW ++ ++E +L +LL F PL +V S D T
Sbjct: 21 GEKKFRATQIWDWLYRKRVQSFEEMTNLSKDFIALLNENFLVNPLK---QRIVQESADGT 77
Query: 80 TKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTM 139
K L +L +G +E V+MR L ++C+++QVGC +GC FCA+G +
Sbjct: 78 VKYLFELPDGMLIETVLMRQHYGL--------------SVCVTTQVGCNIGCTFCASGLI 123
Query: 140 GFKSNLSSGEIVEQLVHASRL-------SNIRNVVFMGMGEPLNNYAALVEAVRIMT--- 189
+ +L++GEI Q++ + I +VV MG+GEP +NY +++ +R +
Sbjct: 124 KKQRDLNNGEITAQIMLVQKYFDERGQGERISHVVVMGIGEPFDNYDNVLKFLRTINDDN 183
Query: 190 GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEK 249
GL + + ITVST G+ H I F ++ +NLAVSLHAP ++R IM R+FPLEK
Sbjct: 184 GLA--IGARHITVSTSGLAHKIRDFANEGVQVNLAVSLHAPNNELRSSIMRINRSFPLEK 241
Query: 250 LMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVV--VNLIPFNPIGSV 307
L A++ Y + + +++ EYIML+GVND ++A +L L + + + VNLIP+NP+
Sbjct: 242 LFAAIEYYIETTNRRVTFEYIMLNGVNDSPENAQELADLTKKIRKLSYVNLIPYNPVTEH 301
Query: 308 SQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDKISAKST 363
Q+ S ++V +F +L+ + + VR++ G DI ACGQL N + K+T
Sbjct: 302 DQYSRSPKERVDAFYDVLKKN-GVNCVVRQEHGTDIDAACGQLRSNTMKRDREKAT 356
>gi|254442339|ref|ZP_05055815.1| radical SAM enzyme, Cfr family [Verrucomicrobiae bacterium DG1235]
gi|198256647|gb|EDY80955.1| radical SAM enzyme, Cfr family [Verrucomicrobiae bacterium DG1235]
Length = 342
Score = 200 bits (509), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 119/318 (37%), Positives = 181/318 (56%), Gaps = 27/318 (8%)
Query: 40 NCEWDEFPSLPSAAYSLLRSKFKPLTSTLHSVVDSSDDVTTKLLVKLQNGGFVEAVIMRY 99
N WD+ A + + +F+ TL S +DS D TKLL + +G +E VI+R
Sbjct: 41 NLGWDD------AFTANFKEQFETSYLTLVSRIDSKIDGATKLLFETPDGKKIETVILRI 94
Query: 100 DSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASR 159
+ R+++C+SSQVGC C FCATG +GF NL S EI++Q+V A R
Sbjct: 95 ATG-------------RTSICVSSQVGCTEKCRFCATGELGFFRNLKSEEILDQVVQAGR 141
Query: 160 L-----SNIRNVVFMGMGEPLNNYAALVEAV-RIMTGLPFQVSPKRITVSTVGIVHAINK 213
+ ++RN+VFMGMGEPL NY LV A+ ++++ F+ PKRITVS++GI I K
Sbjct: 142 ILASEDRSLRNIVFMGMGEPLRNYDNLVAAMDQLLSEHVFKFVPKRITVSSLGIPELIVK 201
Query: 214 FHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLD 273
F P ++LA+SL+ R ++MP +P+ L + L++ + + + IEYIM
Sbjct: 202 FAQRFPQVSLALSLNGSNDAARSEVMPINNRYPMADLRSMLEQLETIREGIVMIEYIMFK 261
Query: 274 GVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQ-FRTSSDDKVSSFQKILRGSYNIR 332
+ND + A ++ L V +NLIP+NP S+++ F SS + + +F+ L+ S +
Sbjct: 262 DLNDSVEDAAKVAAFLRGLAVHINLIPYNPDYSLNKSFLPSSIETIEAFKNHLQ-SEGYK 320
Query: 333 TTVRKQMGQDISGACGQL 350
T R +GQDI+ ACGQL
Sbjct: 321 VTRRFSLGQDIAAACGQL 338
>gi|422879396|ref|ZP_16925862.1| cfr family radical SAM enzyme [Streptococcus sanguinis SK1059]
gi|422929242|ref|ZP_16962184.1| cfr family radical SAM enzyme [Streptococcus sanguinis ATCC 29667]
gi|422932213|ref|ZP_16965144.1| cfr family radical SAM enzyme [Streptococcus sanguinis SK340]
gi|332366108|gb|EGJ43864.1| cfr family radical SAM enzyme [Streptococcus sanguinis SK1059]
gi|339615058|gb|EGQ19741.1| cfr family radical SAM enzyme [Streptococcus sanguinis ATCC 29667]
gi|339618997|gb|EGQ23587.1| cfr family radical SAM enzyme [Streptococcus sanguinis SK340]
Length = 357
Score = 200 bits (509), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 119/344 (34%), Positives = 191/344 (55%), Gaps = 29/344 (8%)
Query: 19 EKAGIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKF--KPLTSTLHSVVDSSD 76
E G K+ IW+++ ++E +L + L +F PL +V S
Sbjct: 18 EAQGEKKFRAAQIWEWLYRKRVQSFEEMTNLSKDLITKLNDQFVVNPLK---QRIVQESA 74
Query: 77 DVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCAT 136
D T K L +L +G +E V+MR L ++C+++QVGC +GC FCA+
Sbjct: 75 DGTVKYLFELPDGMLIETVLMRQHYGL--------------SVCVTTQVGCNIGCTFCAS 120
Query: 137 GTMGFKSNLSSGEIVEQLVHASRLSNIR--NVVFMGMGEPLNNYAALVEAVRIMT---GL 191
G + + +L++GEIV Q++ + + R ++V MG+GEP +NY +++ VR + GL
Sbjct: 121 GLIKKQRDLNNGEIVAQIMLVQKYFDERVSHIVVMGIGEPFDNYDNVLKFVRTVNDDKGL 180
Query: 192 PFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLM 251
+ + ITVST G+ H I F ++ +NLAVSLHAP D+R IM R+FP+EKL
Sbjct: 181 A--IGARHITVSTSGLAHKIRDFANEGVQVNLAVSLHAPNNDLRTSIMRINRSFPIEKLF 238
Query: 252 NALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVV--VNLIPFNPIGSVSQ 309
A++ Y + + +++ EYIML+ VND + A +L +LL+ + + VNLIP+NP+ Q
Sbjct: 239 AAIEYYIETTNRRVTFEYIMLNEVNDGVEQAKELAELLKNIKKLSYVNLIPYNPVSEHDQ 298
Query: 310 FRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVN 353
+ S ++V +F L+ + + VR++ G DI ACGQL N
Sbjct: 299 YSRSPKERVMAFYDTLKKN-GVNCVVRQEHGTDIDAACGQLRSN 341
>gi|421863302|ref|ZP_16295001.1| unnamed protein product [Neisseria lactamica Y92-1009]
gi|309379239|emb|CBX22196.1| unnamed protein product [Neisseria lactamica Y92-1009]
Length = 364
Score = 200 bits (509), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 133/356 (37%), Positives = 190/356 (53%), Gaps = 29/356 (8%)
Query: 12 GIIRAEFEKAGIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHSV 71
G+IR F G K + +++ ++ +DE L + L + L
Sbjct: 12 GLIR-HFADMGEKPFRAKQVMRWIHQSGAQNFDEMTDLAKSLRHKLNEQANIGIPKLMMS 70
Query: 72 VDSSDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGC 131
+SSD T K L+ + G VE V + P R TLCISSQVGC + C
Sbjct: 71 QESSDG-TRKWLLDVGTGNGVETVFI--------------PESERGTLCISSQVGCALEC 115
Query: 132 NFCATGTMGFKSNLSSGEIVEQLVHASRLSN--------IRNVVFMGMGEPLNNYAALVE 183
FC+TG GF NL++ EI+ QL A++ I NVV MGMGEP+ N+ +V
Sbjct: 116 TFCSTGRQGFNRNLTAAEIIGQLWWANKAMGVTPKNERVISNVVMMGMGEPMANFDNVVT 175
Query: 184 AVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAA 242
A+ IM + +S +R+TVST G+V +++ +P + LAVSLHA +VR QI+P
Sbjct: 176 ALSIMLDDYGYGLSRRRVTVSTSGMVSQMDRLRDVMP-VALAVSLHASNDEVRDQIVPLN 234
Query: 243 RAFPLEKLMNALKEYQ-KNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPF 301
+ +PL++LM A + Y K + I EY+MLDGVND+ QHAH+L L++ NLIPF
Sbjct: 235 KKYPLKELMAACRRYLVKAPRDFITFEYVMLDGVNDKAQHAHELINLVKDVPCKFNLIPF 294
Query: 302 NPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDK 357
NP + S + SS + + F+ IL+ + + TVRK G DI ACGQL + DK
Sbjct: 295 NPFPN-SGYERSSKENIRVFKDILQQAGFV-VTVRKTRGDDIDAACGQLAGQVQDK 348
>gi|457094952|gb|EMG25447.1| Ribosomal RNA large subunit methyltransferase N [Streptococcus
parauberis KRS-02083]
Length = 361
Score = 200 bits (509), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 121/350 (34%), Positives = 194/350 (55%), Gaps = 34/350 (9%)
Query: 22 GIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKF--KPLTSTLHSVVDSSDDVT 79
G K+ IW ++ + ++E ++ +LL F PL +V S D T
Sbjct: 21 GQKKFRATQIWDWLYKKRVDSFEEMTNISKDFIALLNDNFCVNPLK---QRIVQESADGT 77
Query: 80 TKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTM 139
K L +L +G +E V+MR ++ G ++C+++QVGC +GC FCA+G +
Sbjct: 78 VKYLFELPDGMLIETVLMR------QHYG--------HSVCVTTQVGCNIGCTFCASGLI 123
Query: 140 GFKSNLSSGEIVEQLVHASRLSNIR-------NVVFMGMGEPLNNYAALVEAVRIMT--- 189
+ +L+SGEI Q++ + + R +VV MG+GEP +NY +++ +R +
Sbjct: 124 KKQRDLNSGEITAQIMLVQKYFDERGKDERVSHVVVMGIGEPFDNYTNVMKFLRTINDDN 183
Query: 190 GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEK 249
GL + + ITVST G+ H I +F ++ +NLAVSLHAP D+R QIM R+FPLEK
Sbjct: 184 GLA--IGARHITVSTSGLAHKIREFANEGVQVNLAVSLHAPNNDLRSQIMRINRSFPLEK 241
Query: 250 LMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVV--VNLIPFNPIGSV 307
L A++ Y + + +++ EYIML+ VND + A +L L + + + VNLIP+NP+
Sbjct: 242 LFAAIEYYIETTNRRVTFEYIMLNEVNDGVEQAKELADLTKNIRKLCYVNLIPYNPVSEH 301
Query: 308 SQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDK 357
Q+ S ++VS+F +L+ + + VR++ G DI ACGQL N K
Sbjct: 302 DQYSRSPKERVSAFYDVLKKT-GVNCVVRQEHGTDIDAACGQLRSNTMKK 350
>gi|149194715|ref|ZP_01871810.1| hypothetical protein CMTB2_05022 [Caminibacter mediatlanticus TB-2]
gi|149135138|gb|EDM23619.1| hypothetical protein CMTB2_05022 [Caminibacter mediatlanticus TB-2]
Length = 355
Score = 200 bits (509), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 125/345 (36%), Positives = 193/345 (55%), Gaps = 21/345 (6%)
Query: 17 EFEKAGIKQHF-IPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKF--KPLTSTLHSVVD 73
E + GI+ F + ++ +V ++++ +LP L+ +F PL H +
Sbjct: 11 ELLELGIQPKFRVKQLYNWVYRKYVDDFEKMSNLPKDLREKLKKEFYINPLELINHEI-- 68
Query: 74 SSDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNF 133
+ D T K L KL + +E V+++ + NGK + + T+C+S+QVGCK+GC F
Sbjct: 69 -ASDGTEKFLFKLNDNHTIETVLIKMKDDRVE-NGKKKEA--KYTVCVSTQVGCKVGCAF 124
Query: 134 CATGTMGFKSNLSSGEIVEQLVHASRLSNIR-----NVVFMGMGEPLNNYAALVEAVRIM 188
C T GF NLS+GEIV Q+ + N NVVFMGMGEPL+NY LV+A++I+
Sbjct: 125 CLTAKGGFVRNLSAGEIVAQVWFMKKFKNFDENKALNVVFMGMGEPLDNYNNLVKAIKII 184
Query: 189 TGLP-FQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPL 247
++P+R TVST GI I K + G+NLA+SLHA +R Q++P +A+ +
Sbjct: 185 AHTDGLNIAPRRQTVSTSGIAPKIKKLGEENLGVNLAISLHAVDDKLREQLIPLNKAYNI 244
Query: 248 EKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSV 307
+ ++ A++E+ + ++K+ EY+++ VND A +L KLL VNLI FNP
Sbjct: 245 QSVIEAIREFPIDKRKKVMFEYLVIKDVNDNLDSAKKLVKLLNGIPSKVNLIYFNPYPG- 303
Query: 308 SQFRTSSDDKVSSFQKIL--RGSYNIRTTVRKQMGQDISGACGQL 350
S F+ ++ + FQ+ L RG I T+R+ G DIS ACGQL
Sbjct: 304 SPFKRPDEETMKKFQRYLLDRG---ITCTIRQSKGIDISAACGQL 345
>gi|258406363|ref|YP_003199105.1| ribosomal RNA large subunit methyltransferase N [Desulfohalobium
retbaense DSM 5692]
gi|257798590|gb|ACV69527.1| radical SAM enzyme, Cfr family [Desulfohalobium retbaense DSM 5692]
Length = 359
Score = 200 bits (509), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 124/330 (37%), Positives = 182/330 (55%), Gaps = 29/330 (8%)
Query: 31 IWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHSVVDSSDDVTTKLLVKLQNGG 90
IW+++ +++ ++ + S L F P+ + V +S D T K L+ L +G
Sbjct: 31 IWQWLWIKGATSFEDMTNVSKSLRSALSQVF-PIALPTVAEVHTSADGTRKFLLNLHDGH 89
Query: 91 FVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEI 150
+E V++ PGG T C+S+QVGC +GC FC+TG MG NLS+ EI
Sbjct: 90 VLETVLI--------------PGGEHFTQCLSTQVGCNLGCTFCSTGQMGLTRNLSAAEI 135
Query: 151 VEQLVHASRL-------SNIRNVVFMGMGEPLNNYAALVEAV-RIMTGLPFQVSPKRITV 202
Q++ A +RN+VFMGMGEPL N+ + A+ R++ SP+R+TV
Sbjct: 136 AGQVIVARNHLWQTGTGMRLRNLVFMGMGEPLLNWENVDNALDRLIHASAMNFSPRRVTV 195
Query: 203 STVGIVHAINKF-HSDLPGLNLAVSLHAPVQDVRCQIMP-AARAFPLEKLMNALKEYQKN 260
STVG+ ++ HS +LAVSLHAP Q++R +IMP AAR PL L+ L+ Y
Sbjct: 196 STVGVPGTLDALGHSH--KASLAVSLHAPNQELREKIMPRAARMLPLPDLLARLRSYPMA 253
Query: 261 SQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSS 320
+Q++ IEY++L GVND A QL + L + VNLI FNP + + ++V +
Sbjct: 254 PRQRVTIEYVLLGGVNDSLDQARQLVRCLNGIRCKVNLIAFNPCPGLP-YSAPETEQVLA 312
Query: 321 FQKILRGSYNIRTTVRKQMGQDISGACGQL 350
F+ +LR + T+RK GQDIS ACGQL
Sbjct: 313 FETLLR-DKGLTATLRKSKGQDISAACGQL 341
>gi|19553223|ref|NP_601225.1| ribosomal RNA large subunit methyltransferase N [Corynebacterium
glutamicum ATCC 13032]
gi|62390859|ref|YP_226261.1| ribosomal RNA large subunit methyltransferase N [Corynebacterium
glutamicum ATCC 13032]
gi|418245469|ref|ZP_12871874.1| ribosomal RNA large subunit methyltransferase N [Corynebacterium
glutamicum ATCC 14067]
gi|81760328|sp|Q8NP06.1|RLMN_CORGL RecName: Full=Probable dual-specificity RNA methyltransferase RlmN;
AltName: Full=23S rRNA
(adenine(2503)-C(2))-methyltransferase; AltName:
Full=23S rRNA m2A2503 methyltransferase; AltName:
Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=tRNA (adenine(37)-C(2))-methyltransferase;
AltName: Full=tRNA m2A37 methyltransferase
gi|21324790|dbj|BAB99413.1| Predicted Fe-S-cluster redox enzyme [Corynebacterium glutamicum
ATCC 13032]
gi|41326198|emb|CAF20360.1| Predicted Fe-S-cluster redox enzyme [Corynebacterium glutamicum
ATCC 13032]
gi|354510380|gb|EHE83304.1| ribosomal RNA large subunit methyltransferase N [Corynebacterium
glutamicum ATCC 14067]
gi|385144125|emb|CCH25164.1| predicted Fe-S-cluster redox enzyme [Corynebacterium glutamicum
K051]
Length = 366
Score = 200 bits (509), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 122/318 (38%), Positives = 173/318 (54%), Gaps = 31/318 (9%)
Query: 49 LPSAAYSLLRSKFKPLTSTLHSVVDSSDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNG 108
LP A ++ P + VV++ DD T K L KL +G +E+V+MRY
Sbjct: 64 LPEGARQEVKDALFPTLMSPLRVVETDDDTTQKTLWKLHDGTLLESVLMRYSD------- 116
Query: 109 KPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHA-----SRLSNI 163
RSTLCISSQ GC M C FCATG G NLS GEIV+Q+ +A S +
Sbjct: 117 -------RSTLCISSQAGCGMACPFCATGQGGLDRNLSIGEIVDQVRNAAATMQSEGGRL 169
Query: 164 RNVVFMGMGEPLNNYAALVEAVRIMTG---LPFQVSPKRITVSTVGIVHAINKFHSDLPG 220
N+VFMGMGEPL NY +V AVR +T F +S + +TVSTVG+ AI K +
Sbjct: 170 SNIVFMGMGEPLANYKRVVSAVRQITQPSPAGFGISQRSVTVSTVGLAPAIRKLADEEMS 229
Query: 221 LNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQ 280
+ LAVSLH P ++R ++P +P+ ++++A + Y S +++ IEY ++ VND++
Sbjct: 230 VTLAVSLHTPDDELRDTLVPVNNRWPVAEVLDAARYYADKSGRRVSIEYALIRDVNDQDW 289
Query: 281 HAHQLGKLLETF---QVVVNLIPFNPIGSVSQFRTSSDDKVSSFQK--ILRGSYNIRTTV 335
A LG+ L +V VNLIP NP S++ + + F + I +G + TV
Sbjct: 290 RADMLGEKLHKALGSRVHVNLIPLNPTPG-SKWDAAPKARQDEFVRRVIAKG---VPCTV 345
Query: 336 RKQMGQDISGACGQLVVN 353
R GQ+I+ ACGQL
Sbjct: 346 RDTKGQEIAAACGQLAAE 363
>gi|381400771|ref|ZP_09925691.1| ribosomal RNA large subunit methyltransferase N [Kingella kingae
PYKK081]
gi|380834257|gb|EIC14105.1| ribosomal RNA large subunit methyltransferase N [Kingella kingae
PYKK081]
Length = 364
Score = 200 bits (509), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 123/294 (41%), Positives = 169/294 (57%), Gaps = 27/294 (9%)
Query: 74 SSDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNF 133
S D T K L+ + G VE V + P R TLCISSQVGC + C F
Sbjct: 72 ESKDGTRKWLLDVGTGNGVETVFI--------------PETERGTLCISSQVGCALECTF 117
Query: 134 CATGTMGFKSNLSSGEIVEQLVHASRLSN--------IRNVVFMGMGEPLNNYAALVEAV 185
C+TG GF NLS+ EI+ QL A++ I NVV MGMGEPL NY ++ A+
Sbjct: 118 CSTGRQGFNRNLSAAEIIGQLWWANKALGVTPKNERVISNVVMMGMGEPLANYDNVITAL 177
Query: 186 RIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARA 244
IM + +S +R+TVST G+V +++ D+P + LAVSLHA VR +I+P +
Sbjct: 178 SIMLDDHGYGLSRRRVTVSTSGMVPQMDRLKEDMP-VALAVSLHASNDKVRDEIVPLNKK 236
Query: 245 FPLEKLMNALKEYQ-KNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNP 303
+PL++LM A Y K + I EY+MLDGVND+ +HA +L +L++ NLIPFNP
Sbjct: 237 YPLKELMAACNRYLVKAPRDFITFEYVMLDGVNDKPEHARELVELVKDTPCKFNLIPFNP 296
Query: 304 IGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDK 357
+ S + SS+ ++ F++IL + N+ TTVRK G DI ACGQL + DK
Sbjct: 297 FPN-SGYERSSNKNINIFKEILMEA-NLVTTVRKTRGDDIDAACGQLAGQVKDK 348
>gi|264679426|ref|YP_003279333.1| radical SAM enzyme, Cfr family [Comamonas testosteroni CNB-2]
gi|262209939|gb|ACY34037.1| radical SAM enzyme, Cfr family [Comamonas testosteroni CNB-2]
Length = 369
Score = 200 bits (509), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 132/368 (35%), Positives = 198/368 (53%), Gaps = 34/368 (9%)
Query: 9 FDGGIIRAEFEKAGIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTL 68
FD + A E+ G K+ +++++ + ++D+ L + L+S+ +T+
Sbjct: 4 FDLEGLTAYCEQLGEKRFRATQLFRWIHQRGASDFDQMTDLAKSLREKLKSRAH-ITALP 62
Query: 69 HSVVDSSDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCK 128
S D T K L + +G VE+V + P R TLC+SSQ GC
Sbjct: 63 VVTEHVSADGTVKWLFDVGDGNAVESVFI--------------PEDDRGTLCVSSQAGCA 108
Query: 129 MGCNFCATGTMGFKSNLSSGEIVEQLVHAS-----RLSN----IRNVVFMGMGEPLNNYA 179
+GC FC+TG GF NL++GEI+ QL +A R I NVV MGMGEPL NY+
Sbjct: 109 VGCRFCSTGHQGFSRNLNTGEILAQLWYAEHSLRKRFGTEDRIISNVVMMGMGEPLQNYS 168
Query: 180 ALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQI 238
ALV A+R+M + +S +R+TVST G+V +++ D + LAVSLHAP +R +
Sbjct: 169 ALVPALRVMLDDHGYGLSRRRVTVSTSGVVPMMDRLSQDC-AVALAVSLHAPNDPLRDNL 227
Query: 239 MPAARAFPLEKLMNALKEYQKNSQQK-IFIEYIMLDGVNDEEQHAHQLGKLLET-----F 292
+P + +P+ +L++A + Y + + + I EY MLDGVND+ +HA QL +L+
Sbjct: 228 VPLNKKYPIAELLDACERYLEFAPRDFITFEYCMLDGVNDQPEHARQLIELVRARGDGKS 287
Query: 293 QVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVV 352
NLIPFNP + R+ S +V+ F +L + I TTVRK G DI ACGQL
Sbjct: 288 WCKFNLIPFNPFPASGLLRSPS-ARVTEFATLLSNA-GIVTTVRKTRGDDIDAACGQLAG 345
Query: 353 NLPDKISA 360
++ D+ A
Sbjct: 346 DVKDRTRA 353
>gi|431931243|ref|YP_007244289.1| 2-vinyl bacteriochlorophyllide hydratase [Thioflavicoccus mobilis
8321]
gi|431829546|gb|AGA90659.1| 23S rRNA m2A2503 methyltransferase [Thioflavicoccus mobilis 8321]
Length = 374
Score = 200 bits (508), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 123/297 (41%), Positives = 170/297 (57%), Gaps = 27/297 (9%)
Query: 75 SDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFC 134
+ D T K L ++ +G +E V + P R TLCISSQVGC +GC FC
Sbjct: 86 APDGTVKWLTEVGDGQRIETVFI--------------PEAGRRTLCISSQVGCALGCAFC 131
Query: 135 ATGTMGFKSNLSSGEIVEQLVHASRLSNI--RNVVFMGMGEPLNNYAALVEAVRIMT-GL 191
ATG GF NLS EI+ Q+ H +R + NVV MGMGEPL N+ A V A+ I+
Sbjct: 132 ATGQQGFARNLSLAEIIGQVWHVTRYLGVPPSNVVLMGMGEPLANFDAAVAAMEILQDDF 191
Query: 192 PFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLM 251
+ +S R+T+ST GIV I + + + + LAVSLHAP +R +++P R +PLE L+
Sbjct: 192 AYMLSKYRVTLSTSGIVPNIYRLGT-VSDVALAVSLHAPNNALRDELVPINRKYPLEVLL 250
Query: 252 NALKEYQK-NSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQF 310
A K Y + + +++I EY+MLDGVND + A QL +LLE +NLIPFNP +F
Sbjct: 251 PACKTYLRGDRRRRITWEYVMLDGVNDGMKEAKQLIRLLEGIPSKINLIPFNPFPG-GRF 309
Query: 311 RTSSDDKVSSF-QKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDKISAKSTPPV 366
S ++V +F Q++LR + TT RK G I+ ACGQLV ++ TPP
Sbjct: 310 AASPPERVEAFRQRLLRS--GLMTTTRKTRGDAIAAACGQLV----GQVQRHRTPPA 360
>gi|410627452|ref|ZP_11338191.1| 23S rRNA (adenine2503-C2)-methyltransferase [Glaciecola mesophila
KMM 241]
gi|410152944|dbj|GAC24960.1| 23S rRNA (adenine2503-C2)-methyltransferase [Glaciecola mesophila
KMM 241]
Length = 380
Score = 200 bits (508), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 127/365 (34%), Positives = 194/365 (53%), Gaps = 46/365 (12%)
Query: 18 FEKAGIKQHFIPL---------IWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTL 68
F +AG++++F + + K++ + ++D+ +L A LR K K
Sbjct: 17 FNRAGLREYFSSIGEKPFRADQMMKWIYQAGVSDFDQMTNLNKA----LREKLKAQCEVK 72
Query: 69 HSVV---DSSDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQV 125
+ + D T K ++L+ G VE V + P R+TLC+SSQV
Sbjct: 73 APEIAYQQGASDGTIKFALRLEGGQEVETVWI--------------PDADRATLCVSSQV 118
Query: 126 GCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASR---LSN------IRNVVFMGMGEPLN 176
GC + C FC+T GF NLS EI+ Q+ + LSN I NVV MGMGEPL
Sbjct: 119 GCALECTFCSTAQQGFNRNLSVSEIIGQVWRVATTIGLSNDSAKRPITNVVMMGMGEPLL 178
Query: 177 NYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVR 235
N +V A+ +M L F +S +R+T+ST G+V A++ D + LA+SLHAP +R
Sbjct: 179 NLKNVVPAMDLMLDDLAFGLSKRRVTLSTSGVVPALDML-GDQIDVALAISLHAPDDKLR 237
Query: 236 CQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDEEQHAHQLGKLLETF 292
+I+P + +P+++ + ++ Y S Q K+ +EY+ML+G+ND AH+L K+L
Sbjct: 238 DEIVPINKKYPIQEFLAGVRRYLAKSNANQGKVTVEYVMLNGINDSTDQAHELAKVLADT 297
Query: 293 QVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVV 352
+NLIPFNP S + SS+ ++ F K+L SY + VRK G DI ACGQLV
Sbjct: 298 PCKINLIPFNPYPG-SPYSRSSNSRIDRFAKVL-SSYGLMVVVRKTRGDDIDAACGQLVG 355
Query: 353 NLPDK 357
++ D+
Sbjct: 356 DVVDR 360
>gi|76787054|ref|YP_329191.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
agalactiae A909]
gi|424049946|ref|ZP_17787497.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
agalactiae ZQ0910]
gi|123730855|sp|Q3K2R2.1|RLMN_STRA1 RecName: Full=Probable dual-specificity RNA methyltransferase RlmN;
AltName: Full=23S rRNA
(adenine(2503)-C(2))-methyltransferase; AltName:
Full=23S rRNA m2A2503 methyltransferase; AltName:
Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=tRNA (adenine(37)-C(2))-methyltransferase;
AltName: Full=tRNA m2A37 methyltransferase
gi|76562111|gb|ABA44695.1| radical SAM enzyme, Cfr family [Streptococcus agalactiae A909]
gi|389648522|gb|EIM70023.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
agalactiae ZQ0910]
Length = 368
Score = 200 bits (508), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 117/346 (33%), Positives = 191/346 (55%), Gaps = 34/346 (9%)
Query: 22 GIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKF--KPLTSTLHSVVDSSDDVT 79
G K+ IW ++ + +DE ++ +LL F PL +V S D T
Sbjct: 30 GEKKFRASQIWDWLYKKRVQSFDEMTNISKDFIALLNENFVVNPLK---QRIVQESADGT 86
Query: 80 TKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTM 139
K L +L +G +E V+MR L ++C+++QVGC +GC FCA+G +
Sbjct: 87 VKYLFELPDGMLIETVLMRQHYGL--------------SVCVTTQVGCNIGCTFCASGLI 132
Query: 140 GFKSNLSSGEIVEQLVHASRLSNIR-------NVVFMGMGEPLNNYAALVEAVRIMT--- 189
+ +L++GEI Q++ + + R ++V MG+GEP +NY +++ +R +
Sbjct: 133 KKQRDLNNGEITAQIMLVQKYFDERGQGERVSHIVVMGIGEPFDNYTNVLKFLRTVNDDN 192
Query: 190 GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEK 249
GL + + ITVST G+ H I +F ++ +NLAVSLHAP ++R IM R+FPLEK
Sbjct: 193 GLA--IGARHITVSTSGLAHKIREFANEGVQVNLAVSLHAPNNELRSSIMRINRSFPLEK 250
Query: 250 LMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVV--VNLIPFNPIGSV 307
L A++ Y + + +++ EYIML+GVND ++A +L L + + + VNLIP+NP+
Sbjct: 251 LFAAIEYYIETTNRRVTFEYIMLNGVNDTPENAQELADLTKKIRKLSYVNLIPYNPVSEH 310
Query: 308 SQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVN 353
Q+ S ++V +F +L+ + + VR++ G DI ACGQL N
Sbjct: 311 DQYSRSPKERVEAFYDVLKKN-GVNCVVRQEHGTDIDAACGQLRSN 355
>gi|408827450|ref|ZP_11212340.1| ribosomal RNA large subunit methyltransferase N [Streptomyces
somaliensis DSM 40738]
Length = 370
Score = 200 bits (508), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 115/324 (35%), Positives = 176/324 (54%), Gaps = 33/324 (10%)
Query: 45 EFPSLPSAAYSLLRSKFKPLTSTLHSVVDSSDDVTTKLLVKLQNGGFVEAVIMRYDSSLG 104
E+ +P+A+ L + P ++ + DD T K L +L +G VE+V+MRY
Sbjct: 63 EWTDIPAASRGKLAEELLPELMSVVRHISCDDDTTRKTLWRLHDGTLVESVLMRYPD--- 119
Query: 105 KYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRL---- 160
R T+C+SSQ GC M C FCATG G NLS+ EIV Q+V R
Sbjct: 120 -----------RVTMCVSSQAGCGMNCPFCATGQAGLDRNLSTAEIVHQIVDGMRALRDG 168
Query: 161 ------SNIRNVVFMGMGEPLNNYAALVEAVRIMT-----GLPFQVSPKRITVSTVGIVH 209
+ + N+VFMGMGEPL NY +V A+R +T GL +S + ITVSTVG+V
Sbjct: 169 EVPGGPARLSNIVFMGMGEPLANYNRVVGAIRRLTDPEPDGL--GLSQRGITVSTVGLVP 226
Query: 210 AINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEY 269
A+ +F + LAVSLHAP ++R ++P + + ++++A EY + S +++ +EY
Sbjct: 227 AMLRFADEGLKCRLAVSLHAPDDELRDTLVPVNTRWKVREVLDAAWEYAEKSGRRVSVEY 286
Query: 270 IMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSY 329
++ VND+ LG+LL++ +V VNLIP NP + +D+ + + + ++
Sbjct: 287 ALIRDVNDQAWRGDLLGRLLKSRRVHVNLIPLNPTPGSKWTASRPEDEKAFVEAV--AAH 344
Query: 330 NIRTTVRKQMGQDISGACGQLVVN 353
+ TVR G++I GACGQL
Sbjct: 345 GVPVTVRDTRGREIDGACGQLAAT 368
>gi|93005478|ref|YP_579915.1| hypothetical protein Pcryo_0648 [Psychrobacter cryohalolentis K5]
gi|123264706|sp|Q1QD22.1|RLMN_PSYCK RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|92393156|gb|ABE74431.1| 23S rRNA m(2)A-2503 methyltransferase [Psychrobacter cryohalolentis
K5]
Length = 413
Score = 200 bits (508), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 116/306 (37%), Positives = 176/306 (57%), Gaps = 35/306 (11%)
Query: 75 SDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFC 134
SDD T K + ++ G VE V++ D S K NG R TLC+SSQVGC + C+FC
Sbjct: 103 SDDGTRKWVFEVTGGSLVETVLIPADDS--KLNG-------RKTLCVSSQVGCALDCSFC 153
Query: 135 ATGTMGFKSNLSSGEIVEQLV------------------HASRLSNIRNVVFMGMGEPLN 176
+TG GF+ +L++ EI+ QL H+ +N+ NVV MGMGEPL
Sbjct: 154 STGKQGFERDLTAAEILGQLWVANASYMTDENDSLENVDHSLWENNVTNVVMMGMGEPLL 213
Query: 177 NYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVR 235
NY +V ++ +M + + +S +R+T+ST G+V + + +L + LA+SLHAP ++R
Sbjct: 214 NYRPVVSSMELMLSDHAYGLSKRRVTLSTSGVVPKMYELAQEL-DVALAISLHAPNDELR 272
Query: 236 CQIMPAARAFPLEKLMNALKEY----QKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLET 291
+++P + +PLE+LM A + Y ++ + IEY+MLDGVND +HA QL LL
Sbjct: 273 NELVPINKKYPLEQLMAAARNYVFDVNPRHKKHVTIEYVMLDGVNDSNEHAEQLVALLGN 332
Query: 292 FQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLV 351
+NLIPFNP + + SS++++ +F IL + T+R+ G DI ACGQLV
Sbjct: 333 LPSKINLIPFNPFPH-ANYDKSSNNRIHAFSNILSEA-GFVCTIRQTRGDDIDAACGQLV 390
Query: 352 VNLPDK 357
+ D+
Sbjct: 391 GQVADR 396
>gi|442770949|gb|AGC71650.1| ribosomal RNA large subunit methyltransferase N [uncultured
bacterium A1Q1_fos_1025]
Length = 363
Score = 200 bits (508), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 129/348 (37%), Positives = 184/348 (52%), Gaps = 30/348 (8%)
Query: 22 GIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKFK-PLTSTLHSVVDSSDDVTT 80
G ++ + +W+ + E DE SLP A + L ++ L + V D D T
Sbjct: 22 GEPRYRLDQVWQGLYEQLAAP-DELTSLPKALRARLDAELPLALEQEVRRVSDHGD--TV 78
Query: 81 KLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMG 140
K L +L +G +E V+M Y R T+C+SSQ GC M C FCATG G
Sbjct: 79 KYLWRLADGHRIETVLMLYPD--------------RVTVCVSSQAGCAMDCGFCATGQAG 124
Query: 141 FKSNLSSGEIVEQLVHASRLSN-----IRNVVFMGMGEPLNNYAALVEAV-RIMTGLPFQ 194
FK +L++GEIVEQ+ A+R + + NVVFMGMGEPL N AA+ A+ RI L
Sbjct: 125 FKRHLTTGEIVEQVARAAREARGMGRRLGNVVFMGMGEPLANEAAVWGAIERIHRDL--G 182
Query: 195 VSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNAL 254
+S + +TVST+GIV I +NLAVSLHA ++R ++P + +PL++LM A
Sbjct: 183 LSARHLTVSTIGIVPGIRSLAGRPLPVNLAVSLHAANDELRDTLVPMNKRYPLQQLMGAC 242
Query: 255 KEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVV--VNLIPFNPIGSVSQFRT 312
+Y ++I E+ ++DGVND + A +L L F++ VNLIP NP
Sbjct: 243 ADYLAVKGRRISFEWALIDGVNDRDSDAKELAALSTRFRLAAHVNLIPLNPTPGWPTV-G 301
Query: 313 SSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDKISA 360
SS +V F+ +L + TVR+ G DI ACGQL P ++ A
Sbjct: 302 SSPARVREFRDLLE-RLGVNATVRRNRGTDIDAACGQLAAGQPVELRA 348
>gi|253575779|ref|ZP_04853114.1| cfr family radical SAM enzyme [Paenibacillus sp. oral taxon 786
str. D14]
gi|251844822|gb|EES72835.1| cfr family radical SAM enzyme [Paenibacillus sp. oral taxon 786
str. D14]
Length = 348
Score = 200 bits (508), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 118/327 (36%), Positives = 180/327 (55%), Gaps = 29/327 (8%)
Query: 32 WKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHSVVDSSDDVTTKLLVKLQNGGF 91
W YV +DE +L A L +F +T + ++S D T K L L +
Sbjct: 33 WLYV--KRVSSFDEMTNLSKALRQKLADEFAFVTLQEITKLESKDG-TVKFLFGLHDDHA 89
Query: 92 VEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIV 151
+E VIM+++ +++C+++QVGCK+GC FCA+ G K NL+ GEIV
Sbjct: 90 IETVIMKHNYG--------------NSICVTTQVGCKVGCTFCASTLGGLKRNLTPGEIV 135
Query: 152 EQLVHASRL-----SNIRNVVFMGMGEPLNNYAALVEAVRIM---TGLPFQVSPKRITVS 203
Q+V A ++ + ++V MG GEP NY A ++ +RIM GL + + ITVS
Sbjct: 136 AQVVQAQKILDAKGERVSSIVIMGTGEPFENYDATMKFLRIMIHEKGL--NIGQRHITVS 193
Query: 204 TVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQ 263
T GIV I +F + +NLA+S+HAP +R ++MP R FP + +M AL+ Y + +
Sbjct: 194 TSGIVPNIYRFADENTQINLAISIHAPNDALRSKLMPVNRRFPFDDVMEALRYYIAKTGR 253
Query: 264 KIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQK 323
+I EY ++ GVND+ +HA +L +++ VNLIP N + RTS +D + FQ+
Sbjct: 254 RITFEYALIGGVNDQPEHAEELADVIKDMLCHVNLIPVNYVPERKYVRTSRND-IFKFQR 312
Query: 324 ILRGSYNIRTTVRKQMGQDISGACGQL 350
IL I T+R++ G DI+ ACGQL
Sbjct: 313 IL-ADKGINVTIRREQGHDIAAACGQL 338
>gi|405754566|ref|YP_006678030.1| hypothetical protein LMOSLCC2540_0487 [Listeria monocytogenes
SLCC2540]
gi|404223766|emb|CBY75128.1| hypothetical protein LMOSLCC2540_0487 [Listeria monocytogenes
SLCC2540]
Length = 367
Score = 200 bits (508), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 116/345 (33%), Positives = 186/345 (53%), Gaps = 30/345 (8%)
Query: 18 FEKAGIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHSVVDSSDD 77
E G K+ +W ++ ++E ++P LL + F + + VV S D
Sbjct: 18 LEAHGQKKFRATQVWDWLYRKRVKTFEEMSNVPKETIELLTANF-VMNTLEEQVVQESTD 76
Query: 78 VTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATG 137
TTK L KL +G +E V+M+ + L ++C+++QVGC +GC FCA+G
Sbjct: 77 GTTKYLFKLSDGNLIETVMMKQEYGL--------------SVCVTTQVGCNIGCTFCASG 122
Query: 138 TMGFKSNLSSGEIVEQLVHASRLSNIRN-------VVFMGMGEPLNNYAALVEAVRIMT- 189
+ +L++GEIVEQ+++ + RN VV MG+GEP +NY +++ +R++
Sbjct: 123 LLKKSRDLTAGEIVEQIMNVQHYLDARNLEERVSHVVVMGIGEPFDNYDNVMDFLRVINH 182
Query: 190 --GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPL 247
GL + + ITVST G+ I F ++ +NLA+SLHAP ++R IM + + +
Sbjct: 183 DKGLA--IGARHITVSTSGLAPRIIDFANEDFQVNLAISLHAPNNELRTSIMRINKTYSI 240
Query: 248 EKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQ--VVVNLIPFNPIG 305
EKLM A+ Y + ++I EYIML GVND ++ A +L LL + VNLIP+NP+
Sbjct: 241 EKLMEAIHYYVNKTNRRITFEYIMLKGVNDHKKEALELAALLGEHRHLAYVNLIPYNPVD 300
Query: 306 SVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 350
+ S+ + V +F L+ + I +R++ G DI ACGQL
Sbjct: 301 EHIDYERSTKEDVLAFYDTLKKN-GINCVIRREHGTDIDAACGQL 344
>gi|338731523|ref|YP_004660915.1| 23S rRNA m(2)A-2503 methyltransferase [Thermotoga thermarum DSM
5069]
gi|335365874|gb|AEH51819.1| 23S rRNA m(2)A-2503 methyltransferase [Thermotoga thermarum DSM
5069]
Length = 343
Score = 200 bits (508), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 125/342 (36%), Positives = 195/342 (57%), Gaps = 28/342 (8%)
Query: 17 EFEKAGIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHSVVD--- 73
E K G++++ + +V + +D+ +L LL F + L VV+
Sbjct: 14 EIVKLGLERYRADQVLDWVYQKLVFSFDQMTNLSKEHRRLLPQHF---SIDLPKVVEKKV 70
Query: 74 SSDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNF 133
S D TTK L +L++G +E+V++ ++ +T CIS+QVGC + C+F
Sbjct: 71 SKFDKTTKYLFELKDGNTIESVLLFHEGY--------------ATACISTQVGCPIRCSF 116
Query: 134 CATGTMGFKSNLSSGEIVEQL--VHASRLSNIRNVVFMGMGEPLNNYAALVEAVRIMTGL 191
CATG GF NL EIV Q+ + A IRNVV+MGMGEPL NY +V++VRI+
Sbjct: 117 CATGQSGFVRNLEVDEIVSQILAIEADSRQKIRNVVYMGMGEPLLNYDNVVKSVRILNHK 176
Query: 192 PFQ-VSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKL 250
+ + +RIT+STVGI I K + +NLA+SLHA + R QI+P A + +E++
Sbjct: 177 KMKNIGIRRITISTVGIPEKIIKLGQEGLDINLAISLHASSNEKRMQIIPLASKYAIEEI 236
Query: 251 MNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLE--TFQVVVNLIPFNPIGSVS 308
++A K++Q+N+ +++ IEYI++ ND ++ A +L K+L+ +V VNLIP NP ++
Sbjct: 237 LDAAKQFQQNTDRRVTIEYILIKEFNDYDEDARRLAKILKEMKMKVFVNLIPVNP--ALP 294
Query: 309 QFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 350
S K++ F++IL S I VR++ G DI ACGQL
Sbjct: 295 GLERPSIWKINRFKEILVES-GIEAEVRREKGVDIEAACGQL 335
>gi|77411450|ref|ZP_00787796.1| radical SAM enzyme, Cfr family [Streptococcus agalactiae CJB111]
gi|77162536|gb|EAO73501.1| radical SAM enzyme, Cfr family [Streptococcus agalactiae CJB111]
Length = 368
Score = 200 bits (508), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 117/346 (33%), Positives = 191/346 (55%), Gaps = 34/346 (9%)
Query: 22 GIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKF--KPLTSTLHSVVDSSDDVT 79
G K+ IW ++ + +DE ++ +LL F PL +V S D T
Sbjct: 30 GEKKFRASQIWDWLYKKRVQSFDEMTNISKDFIALLNENFVVNPLK---QRIVQESADGT 86
Query: 80 TKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTM 139
K L +L +G +E V+MR L ++C+++QVGC +GC FCA+G +
Sbjct: 87 VKYLFELPDGMLIETVLMRQHYGL--------------SVCVTTQVGCNIGCTFCASGLI 132
Query: 140 GFKSNLSSGEIVEQLVHASRLSNIR-------NVVFMGMGEPLNNYAALVEAVRIMT--- 189
+ +L++GEI Q++ + + R ++V MG+GEP +NY +++ +R +
Sbjct: 133 KKQRDLNNGEITAQIMLVQKYFDERGQGERVSHIVVMGIGEPFDNYTNVLKFLRTVNDDN 192
Query: 190 GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEK 249
GL + + ITVST G+ H I +F ++ +NLAVSLHAP ++R IM R+FPLEK
Sbjct: 193 GLA--IGARHITVSTSGLAHKIREFANEGVQVNLAVSLHAPNNELRSSIMRINRSFPLEK 250
Query: 250 LMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVV--VNLIPFNPIGSV 307
L A++ Y + + +++ EYIML+GVND ++A +L L + + + VNLIP+NP+
Sbjct: 251 LFAAIEYYIETTNRRVTFEYIMLNGVNDTPENAQELADLTKKIRKLSYVNLIPYNPVSEH 310
Query: 308 SQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVN 353
Q+ S ++V +F +L+ + + VR++ G DI ACGQL N
Sbjct: 311 DQYSRSPKERVEAFYDVLKKN-GVNCVVRQEHGTDIDAACGQLRSN 355
>gi|410641928|ref|ZP_11352447.1| 23S rRNA (adenine2503-C2)-methyltransferase [Glaciecola
chathamensis S18K6]
gi|410138830|dbj|GAC10634.1| 23S rRNA (adenine2503-C2)-methyltransferase [Glaciecola
chathamensis S18K6]
Length = 380
Score = 200 bits (508), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 127/365 (34%), Positives = 195/365 (53%), Gaps = 46/365 (12%)
Query: 18 FEKAGIKQHFIPL---------IWKYVIENPNCEWDEFPSLPSAAYSLLRSKFK---PLT 65
F +AG++++F + + K++ + ++D+ +L A LR K K +
Sbjct: 17 FNRAGLREYFSSIGEKPFRADQVMKWIYQAGESDFDQMTNLNKA----LREKLKMQCEVK 72
Query: 66 STLHSVVDSSDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQV 125
+ + + D T K ++L+ G VE V + P R+TLC+SSQV
Sbjct: 73 APEIAYQQGATDGTIKFALRLEGGQEVETVWI--------------PDADRATLCVSSQV 118
Query: 126 GCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASR---LSN------IRNVVFMGMGEPLN 176
GC + C FC+T GF NLS EI+ Q+ + LSN I NVV MGMGEPL
Sbjct: 119 GCALECTFCSTAQQGFNRNLSVAEIIGQVWRVATTIGLSNDSAKRPITNVVMMGMGEPLL 178
Query: 177 NYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVR 235
N +V A+ +M L F +S +R+T+ST G+V A++ D + LA+SLHAP +R
Sbjct: 179 NLKNVVPAMDLMLDDLAFGLSKRRVTLSTSGVVPALDML-GDQIDVALAISLHAPDDTLR 237
Query: 236 CQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDEEQHAHQLGKLLETF 292
+I+P + +P+++ + ++ Y S Q K+ +EY+ML+G+ND AH L K+L
Sbjct: 238 DEIVPINKKYPIQEFLAGVRRYLAKSNANQGKVTVEYVMLNGINDSTDQAHALAKVLADT 297
Query: 293 QVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVV 352
+NLIPFNP S + SS+ ++ F K+L SY + VRK G DI ACGQLV
Sbjct: 298 PSKINLIPFNPYPG-SPYSRSSNSRIDRFAKVL-SSYGLMVVVRKTRGDDIDAACGQLVG 355
Query: 353 NLPDK 357
++ D+
Sbjct: 356 DVVDR 360
>gi|422759427|ref|ZP_16813189.1| radical SAM superfamily protein [Streptococcus dysgalactiae subsp.
dysgalactiae ATCC 27957]
gi|322412262|gb|EFY03170.1| radical SAM superfamily protein [Streptococcus dysgalactiae subsp.
dysgalactiae ATCC 27957]
Length = 360
Score = 200 bits (508), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 121/355 (34%), Positives = 195/355 (54%), Gaps = 34/355 (9%)
Query: 22 GIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKF--KPLTSTLHSVVDSSDDVT 79
G K+ IW +V + +D+ ++ ++L+ F PL +V S D T
Sbjct: 21 GQKKFRATQIWDWVYKKRVQSFDDMTNISKDFIAILKENFCVNPLK---QRIVQESADGT 77
Query: 80 TKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTM 139
K L +L +G +E V+MR ++ G ++C+++QVGC +GC FCA+G +
Sbjct: 78 VKYLFELPDGMLIETVLMR------QHYGH--------SVCVTTQVGCNIGCTFCASGLI 123
Query: 140 GFKSNLSSGEIVEQLVHASRLSNIR-------NVVFMGMGEPLNNYAALVEAVRIMT--- 189
+ +L+SGEI Q++ + + R +VV MG+GEP +NY ++ +R +
Sbjct: 124 KKQRDLNSGEITAQIMLVQKYFDERGQDERVSHVVVMGIGEPFDNYQNVMSFLRTINDDN 183
Query: 190 GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEK 249
GL + + ITVST G+ H I +F ++ +NLAVSLHAP D+R IM R+FPLEK
Sbjct: 184 GLA--IGARHITVSTSGLAHKIREFANEGVQVNLAVSLHAPNNDLRSSIMRINRSFPLEK 241
Query: 250 LMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVV--VNLIPFNPIGSV 307
L A++ Y + + +++ EYIML+ VND + A +L L + + + VNLIP+NP+
Sbjct: 242 LFAAIEYYIETTNRRVTFEYIMLNEVNDGVEQAQELADLTKNIRKLSYVNLIPYNPVSEH 301
Query: 308 SQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDKISAKS 362
Q+ S ++VS+F +L+ + + VR++ G DI ACGQL N K K+
Sbjct: 302 DQYSRSPKERVSAFYDVLKKN-GVNCVVRQEHGTDIDAACGQLRSNTMKKDREKA 355
>gi|357638804|ref|ZP_09136677.1| 23S rRNA m2A2503 methyltransferase [Streptococcus urinalis 2285-97]
gi|418417443|ref|ZP_12990638.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
urinalis FB127-CNA-2]
gi|357587258|gb|EHJ56666.1| 23S rRNA m2A2503 methyltransferase [Streptococcus urinalis 2285-97]
gi|410871362|gb|EKS19310.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
urinalis FB127-CNA-2]
Length = 361
Score = 200 bits (508), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 118/363 (32%), Positives = 198/363 (54%), Gaps = 34/363 (9%)
Query: 20 KAGIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKF--KPLTSTLHSVVDSSDD 77
+ G K+ IW ++ + ++E +L + L F PL +V S D
Sbjct: 19 EQGQKKFRANQIWDWLYKKRVSSFEEMTNLSKDLITTLSETFCINPLK---QRIVQESSD 75
Query: 78 VTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATG 137
T K L +L +G +E V+MR L ++C+++QVGC +GC FCA+G
Sbjct: 76 GTVKYLFELTDGMLIETVMMRQHYGL--------------SVCVTTQVGCNIGCTFCASG 121
Query: 138 TMGFKSNLSSGEIVEQLV-------HASRLSNIRNVVFMGMGEPLNNYAALVEAVRIMT- 189
+ + +L+SGEI Q++ ++ + +VV MG+GEP +NY +++ +R +
Sbjct: 122 LIKKQRDLTSGEITAQIMLVQNYFDQRAQGERVSHVVVMGIGEPFDNYQNVLKFLRTIND 181
Query: 190 --GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPL 247
GL + + ITVST G+ H I +F ++ +NLAVSLHAP ++R IM R+FPL
Sbjct: 182 DNGLA--IGARHITVSTSGLAHKIKEFANEGVQVNLAVSLHAPNNELRSSIMRINRSFPL 239
Query: 248 EKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVV--VNLIPFNPIG 305
EKL +A++ Y + + +++ EYIML+ VND ++A +L L + + + VNLIP+NP+
Sbjct: 240 EKLFDAIEYYIETTNRRVTFEYIMLNEVNDYPENAQELADLTKKIRKLSYVNLIPYNPVS 299
Query: 306 SVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDKISAKSTPP 365
Q+ S ++V +F ++L+ + + VR++ G DI ACGQL N K K+
Sbjct: 300 EHDQYSRSPKERVEAFYQVLKKN-GVNCVVRQEHGTDIDAACGQLRSNTMKKDRQKAMVD 358
Query: 366 VTD 368
+++
Sbjct: 359 ISN 361
>gi|332880555|ref|ZP_08448229.1| 23S rRNA m2A2503 methyltransferase [Capnocytophaga sp. oral taxon
329 str. F0087]
gi|357046079|ref|ZP_09107709.1| 23S rRNA m2A2503 methyltransferase [Paraprevotella clara YIT 11840]
gi|332681543|gb|EGJ54466.1| 23S rRNA m2A2503 methyltransferase [Capnocytophaga sp. oral taxon
329 str. F0087]
gi|355531085|gb|EHH00488.1| 23S rRNA m2A2503 methyltransferase [Paraprevotella clara YIT 11840]
Length = 344
Score = 200 bits (508), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 117/310 (37%), Positives = 171/310 (55%), Gaps = 23/310 (7%)
Query: 44 DEFPSLPSAAYSLLRSKFKPLTSTLHSVVDS--SDDVTTKLLVKLQNGGFVEAVIMRYDS 101
DE ++ + LL ++ T + VD S D T K L + GG+VE V +
Sbjct: 45 DEMTNISAKNRRLLNERY---TVGCAAPVDGQRSADGTVKYLYRTAAGGYVETVYI---- 97
Query: 102 SLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLS 161
P G R+TLC+SSQVGC+M C FC TG GF L++ +I+ QL
Sbjct: 98 ----------PDGDRATLCVSSQVGCRMNCRFCMTGKQGFSGQLTAADILNQLYSLPERD 147
Query: 162 NIRNVVFMGMGEPLNNYAALVEAVRIMTG-LPFQVSPKRITVSTVGIVHAINKFHSDLPG 220
+ NVVFMG GEPL+N ++ A I+T + SPKRITVSTVG+ + +F D
Sbjct: 148 TLTNVVFMGQGEPLDNLDNVLRATEILTADYGYAWSPKRITVSTVGLRKGLKRF-LDESE 206
Query: 221 LNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQ 280
+LAVSLH P D R +MPA ++ L +++ L+EY Q+++ EY M +GVND
Sbjct: 207 CHLAVSLHNPFADQRALLMPAENSYGLREIVALLREYDFTHQRRLSFEYTMFEGVNDTPA 266
Query: 281 HAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMG 340
HA +L +LL+ + +NLI F+P+ V + +S++ + F+ L G + + +T+R G
Sbjct: 267 HAKELLRLLDGLECRMNLIRFHPVPGVD-LKGTSEEGMLRFRDYLTG-HGLFSTIRASRG 324
Query: 341 QDISGACGQL 350
QDI ACG L
Sbjct: 325 QDIFAACGLL 334
>gi|182412196|ref|YP_001817262.1| radical SAM protein [Opitutus terrae PB90-1]
gi|205829633|sp|B1ZQZ5.1|RLMN1_OPITP RecName: Full=Probable dual-specificity RNA methyltransferase RlmN
1; AltName: Full=23S rRNA
(adenine(2503)-C(2))-methyltransferase 1; AltName:
Full=23S rRNA m2A2503 methyltransferase 1; AltName:
Full=Ribosomal RNA large subunit methyltransferase N 1;
AltName: Full=tRNA (adenine(37)-C(2))-methyltransferase
1; AltName: Full=tRNA m2A37 methyltransferase 1
gi|177839410|gb|ACB73662.1| radical SAM enzyme, Cfr family [Opitutus terrae PB90-1]
Length = 355
Score = 200 bits (508), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 117/310 (37%), Positives = 176/310 (56%), Gaps = 23/310 (7%)
Query: 50 PSAAYSLLRSKFKPLTSTLHSVVDSSDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGK 109
P+ LR +F P + L + ++D TTKLL++L +G VEAV+M
Sbjct: 49 PAGLLERLRIEFAPGGTALAARQVAADG-TTKLLLRLADGRTVEAVLM------------ 95
Query: 110 PRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVH-----ASRLSNIR 164
P R+ C+SSQVGC MGC+FCAT GF+ NL++GE+VEQ + AS ++
Sbjct: 96 PDYRADRAAGCLSSQVGCAMGCDFCATAQSGFERNLTAGEMVEQFLALRREAASAGRKLQ 155
Query: 165 NVVFMGMGEPLNNYAALVEAVRIMTGLPFQ-VSPKRITVSTVGIVHAINKFHSDLPGLNL 223
VVFMGMGEPL N A++ AVR + + + +++TVSTVG+V I+ + G+NL
Sbjct: 156 TVVFMGMGEPLLNLDAVLTAVRRIADNTYGGLGWRQVTVSTVGLVPGIDALTAADLGINL 215
Query: 224 AVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAH 283
AVSLHAP R ++PA R F + ++ A+ +Q + + + I+Y +L GVND HA
Sbjct: 216 AVSLHAPDDATRAALLPAGRRFAIADILAAVDRFQASRGRPVIIQYCLLKGVNDSAAHAR 275
Query: 284 QLGKLLETFQVVVNLIPFNPIG---SVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMG 340
L ++ + ++ VNL+ +NP G ++ S D+ + F LR + + T +R+ G
Sbjct: 276 MLAAVIGSRRMHVNLLHYNPTGLSLRGVRYEPSGDEAAAQFLAELR-ARGVVTHLRRSRG 334
Query: 341 QDISGACGQL 350
DI ACGQL
Sbjct: 335 PDIDAACGQL 344
>gi|386041818|ref|YP_005960772.1| ribosomal RNA large subunit methyltransferase N [Paenibacillus
polymyxa M1]
gi|343097856|emb|CCC86065.1| ribosomal RNA large subunit methyltransferase N [Paenibacillus
polymyxa M1]
Length = 346
Score = 200 bits (508), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 115/326 (35%), Positives = 177/326 (54%), Gaps = 27/326 (8%)
Query: 32 WKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHSVVD-SSDDVTTKLLVKLQNGG 90
W YV N + E +L A L +F +T LH + S D T K L L +
Sbjct: 33 WLYVKRINN--FSEMTNLSKALREKLEEQFSFVT--LHEITKLESKDGTVKFLFGLHDDH 88
Query: 91 FVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEI 150
+E VIMR++ +++C+++QVGC++GC FCA+ G K NL++GEI
Sbjct: 89 AIETVIMRHNYG--------------NSICVTTQVGCRIGCTFCASTLGGLKRNLTAGEI 134
Query: 151 VEQLVHASRL-----SNIRNVVFMGMGEPLNNYAALVEAVRIMTGLP-FQVSPKRITVST 204
Q+V A ++ + ++V MG GEP NY A + +R M + + ITVST
Sbjct: 135 TAQVVQAQKILDKTNERVSSIVIMGSGEPFENYEATMTFLRTMIHEKGLNIGQRHITVST 194
Query: 205 VGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQK 264
GIV I KF + +NLA+S+HAP +R ++MP R +P + +M++L+ Y + ++
Sbjct: 195 SGIVPNIYKFADEDTQINLAISIHAPNDALRSKLMPVNRRYPFKDVMDSLRYYLAKTGRR 254
Query: 265 IFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKI 324
I EY ++ GVND+ +HA +L +L+ VNLIP N + RTS D + +FQ+I
Sbjct: 255 ISFEYALIGGVNDQAEHAEELADVLKDMLCHVNLIPVNHVPERKYVRTSRSD-IFNFQRI 313
Query: 325 LRGSYNIRTTVRKQMGQDISGACGQL 350
L + T+R++ G DI+ ACGQL
Sbjct: 314 L-AEKGVNVTIRREQGHDIAAACGQL 338
>gi|429745119|ref|ZP_19278562.1| 23S rRNA methyltransferase [Neisseria sp. oral taxon 020 str.
F0370]
gi|429161326|gb|EKY03743.1| 23S rRNA methyltransferase [Neisseria sp. oral taxon 020 str.
F0370]
Length = 362
Score = 200 bits (508), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 131/359 (36%), Positives = 190/359 (52%), Gaps = 28/359 (7%)
Query: 9 FDGGIIRAEFEKAGIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTL 68
+D + A F + G K + +++ + E L + + L K + L
Sbjct: 8 YDLNSLTAWFAEMGEKPFRARQVMRWMHWGGAANFTEMTDLAKSLRAKLEEKAQIGVPAL 67
Query: 69 HSVVDSSDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCK 128
+ +S D T K L+ + G VE V + P R TLCISSQVGC
Sbjct: 68 MTSQESRDG-TRKWLLDVGTGNGVETVFI--------------PESDRGTLCISSQVGCA 112
Query: 129 MGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN--------IRNVVFMGMGEPLNNYAA 180
+ C FC+TG GF NL++ EI+ QL A++ I NVV MGMGEPL NY
Sbjct: 113 LECTFCSTGRQGFNRNLTTAEIIGQLWWANKALGATPKDERVISNVVMMGMGEPLANYEN 172
Query: 181 LVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIM 239
+V A+ +M + +S +R+TVST G+V +++ D+P + LAVSLHA VR QI+
Sbjct: 173 VVRALSVMLDDHGYGLSRRRVTVSTSGMVPQMDRLKEDMP-VALAVSLHASNDAVRDQIV 231
Query: 240 PAARAFPLEKLMNALKEYQ-KNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNL 298
P + +PL++LM A + Y K + + EY+MLDG+ND+ +HA +L KL+E NL
Sbjct: 232 PLNKKYPLKELMGACRRYLVKAPRDFVTFEYVMLDGINDKVEHARELLKLVEDVPCKFNL 291
Query: 299 IPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDK 357
IPFNP + S + SS + + F+ IL+ + + TVRK G DI ACGQL + DK
Sbjct: 292 IPFNPFPN-SGYDRSSAENIRVFRDILQQAGFV-VTVRKTRGDDIDAACGQLAGQVKDK 348
>gi|406708991|ref|YP_006763717.1| cfr family radical SAM enzyme [Streptococcus agalactiae
GD201008-001]
gi|406649876|gb|AFS45277.1| cfr family radical SAM enzyme [Streptococcus agalactiae
GD201008-001]
Length = 374
Score = 200 bits (508), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 117/346 (33%), Positives = 191/346 (55%), Gaps = 34/346 (9%)
Query: 22 GIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKF--KPLTSTLHSVVDSSDDVT 79
G K+ IW ++ + +DE ++ +LL F PL +V S D T
Sbjct: 36 GEKKFRASQIWDWLYKKRVQSFDEMTNISKDFIALLNENFVVNPLK---QRIVQESADGT 92
Query: 80 TKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTM 139
K L +L +G +E V+MR L ++C+++QVGC +GC FCA+G +
Sbjct: 93 VKYLFELPDGMLIETVLMRQHYGL--------------SVCVTTQVGCNIGCTFCASGLI 138
Query: 140 GFKSNLSSGEIVEQLVHASRLSNIR-------NVVFMGMGEPLNNYAALVEAVRIMT--- 189
+ +L++GEI Q++ + + R ++V MG+GEP +NY +++ +R +
Sbjct: 139 KKQRDLNNGEITAQIMLVQKYFDERGQGERVSHIVVMGIGEPFDNYTNVLKFLRTVNDDN 198
Query: 190 GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEK 249
GL + + ITVST G+ H I +F ++ +NLAVSLHAP ++R IM R+FPLEK
Sbjct: 199 GLA--IGARHITVSTSGLAHKIREFANEGVQVNLAVSLHAPNNELRSSIMRINRSFPLEK 256
Query: 250 LMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVV--VNLIPFNPIGSV 307
L A++ Y + + +++ EYIML+GVND ++A +L L + + + VNLIP+NP+
Sbjct: 257 LFAAIEYYIETTNRRVTFEYIMLNGVNDTPENAQELADLTKKIRKLSYVNLIPYNPVSEH 316
Query: 308 SQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVN 353
Q+ S ++V +F +L+ + + VR++ G DI ACGQL N
Sbjct: 317 DQYSRSPKERVEAFYDVLKKN-GVNCVVRQEHGTDIDAACGQLRSN 361
>gi|390939244|ref|YP_006402981.1| 23S rRNA m(2)A-2503 methyltransferase [Sulfurospirillum barnesii
SES-3]
gi|390192351|gb|AFL67406.1| 23S rRNA m(2)A-2503 methyltransferase [Sulfurospirillum barnesii
SES-3]
Length = 358
Score = 200 bits (508), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 121/328 (36%), Positives = 191/328 (58%), Gaps = 14/328 (4%)
Query: 31 IWKYVIENPNCEWDEFPSLPSAAYSLLRSKF--KPLTSTLHSVVDSSDDVTTKLLVKLQN 88
I++++ + ++E +LP L++ + PLT V+ S D + K L L++
Sbjct: 27 IYQWLYQKYVTSFEEMKNLPKELKDQLQANYYLDPLTIV---KVEESRDGSKKYLFALKD 83
Query: 89 GGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSG 148
G VE+V++ GK R T+CISSQVGCK+GC FC TG GFK NLS+G
Sbjct: 84 GNTVESVLLPMKQEQSDEEGKL-IHHTRYTICISSQVGCKIGCAFCLTGKSGFKRNLSAG 142
Query: 149 EIVEQLVHASRLSNIR-----NVVFMGMGEPLNNYAALVEAVRIMTGLP-FQVSPKRITV 202
EI Q++ R + I N+V+MGMGEPL+N + +AVR+ L +SP+R T+
Sbjct: 143 EITTQVLMIKRDNAIAENRRVNIVYMGMGEPLDNLTNVSKAVRMFNDLDGLSISPRRQTI 202
Query: 203 STVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQ 262
ST G+ I K G+ LA+SLHA +R ++MP +A+ +E ++NA+K + +++
Sbjct: 203 STSGLSSQIEKLGKMDLGVLLAISLHAVDDVLREKLMPINKAYNIESIINAVKAFPIDAR 262
Query: 263 QKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQ 322
+++ EY+++ G+ND+++ A +L KLL + VNLI FNP S S+F + + +FQ
Sbjct: 263 KRVMFEYLVMKGLNDDQRSAKKLVKLLHGIKAKVNLIYFNP-HSGSEFGRPLEKDMIAFQ 321
Query: 323 KILRGSYNIRTTVRKQMGQDISGACGQL 350
+ L + + T+R+ G DIS ACGQL
Sbjct: 322 QYLV-DHGVLCTIRQSKGLDISAACGQL 348
>gi|388257762|ref|ZP_10134941.1| radical SAM enzyme, Cfr family [Cellvibrio sp. BR]
gi|387938929|gb|EIK45481.1| radical SAM enzyme, Cfr family [Cellvibrio sp. BR]
Length = 392
Score = 200 bits (508), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 125/357 (35%), Positives = 196/357 (54%), Gaps = 37/357 (10%)
Query: 16 AEFEKAGIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTST-LHSVVDS 74
A FE G K+ + K++ + +D+ ++ LR+K K + L VV
Sbjct: 34 AFFESIGEKKFRAIQVMKWIHQLGADNFDDMTNVSKD----LRAKLKNIAEIRLPEVVQQ 89
Query: 75 SD--DVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCN 132
D D T K L+++ G +E V + P G R TLC+SSQVGC + C+
Sbjct: 90 FDSTDGTRKFLIRVTGGSVIETVFI--------------PDGDRGTLCVSSQVGCSLDCS 135
Query: 133 FCATGTMGFKSNLSSGEIVEQL---------VHASRLSNIRNVVFMGMGEPLNNYAALVE 183
FCATG GF +L++ EI+ Q+ + A+ + NVV MGMGEPL N+ +V+
Sbjct: 136 FCATGKQGFNRDLTAAEIIGQVWIAAKSFGQLQANGPRRVTNVVMMGMGEPLLNFDNVVD 195
Query: 184 AVRIMT-GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAA 242
++ +M + +S +R+T+ST G+V +++ S LA+SLHAP ++R +++P
Sbjct: 196 SMNLMMHDNAYGISKRRVTLSTSGVVPQLDRL-SQYTDACLAISLHAPNDELRNELVPIN 254
Query: 243 RAFPLEKLMNALKEYQK---NSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLI 299
R +P+ L+++ K Y + ++ +KI IEY ++D VND HAH+L +LL V +NLI
Sbjct: 255 RKYPIAMLLDSAKRYIEAMPDTHRKITIEYTLIDQVNDRPHHAHELAELLRDVPVKINLI 314
Query: 300 PFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPD 356
PFNP ++S ++ S++ + FQ IL + I TTVR G DI ACGQL + D
Sbjct: 315 PFNPF-NLSNYKRVSNNALRKFQDILMEAGYI-TTVRTTRGDDIDAACGQLAGQVND 369
>gi|299530509|ref|ZP_07043929.1| radical SAM enzyme, Cfr family protein [Comamonas testosteroni S44]
gi|298721485|gb|EFI62422.1| radical SAM enzyme, Cfr family protein [Comamonas testosteroni S44]
Length = 369
Score = 200 bits (508), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 132/368 (35%), Positives = 198/368 (53%), Gaps = 34/368 (9%)
Query: 9 FDGGIIRAEFEKAGIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTL 68
FD + A E+ G K+ +++++ + ++D+ L + L+S+ +T+
Sbjct: 4 FDLEGLTAYCEQLGEKRFRATQLFRWIHQRGASDFDQMTDLAKSLREKLKSRAH-ITALP 62
Query: 69 HSVVDSSDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCK 128
S D T K L + +G VE+V + P R TLC+SSQ GC
Sbjct: 63 VVTEHVSADGTVKWLFDVGDGNAVESVFI--------------PEDDRGTLCVSSQAGCA 108
Query: 129 MGCNFCATGTMGFKSNLSSGEIVEQLVHAS-----RLSN----IRNVVFMGMGEPLNNYA 179
+GC FC+TG GF NL++GEI+ QL +A R I NVV MGMGEPL NY+
Sbjct: 109 VGCRFCSTGHQGFSRNLNTGEILAQLWYAEHSLRKRFGTEDRIISNVVMMGMGEPLQNYS 168
Query: 180 ALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQI 238
ALV A+R+M + +S +R+TVST G+V +++ D + LAVSLHAP +R +
Sbjct: 169 ALVPALRVMLDDHGYGLSRRRVTVSTSGVVPMMDRLSQDC-AVALAVSLHAPNDPLRDNL 227
Query: 239 MPAARAFPLEKLMNALKEYQKNSQQK-IFIEYIMLDGVNDEEQHAHQLGKLLET-----F 292
+P + +P+ +L++A + Y + + + I EY MLDGVND+ +HA QL +L+
Sbjct: 228 VPLNKKYPIAELLDACERYLEFAPRDFITFEYCMLDGVNDQLEHARQLIELVRARGDGKS 287
Query: 293 QVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVV 352
NLIPFNP + R+ S +V+ F +L + I TTVRK G DI ACGQL
Sbjct: 288 WCKFNLIPFNPFPASGLLRSPS-ARVTEFATLLSNA-GIVTTVRKTRGDDIDAACGQLAG 345
Query: 353 NLPDKISA 360
++ D+ A
Sbjct: 346 DVKDRTRA 353
>gi|406945406|gb|EKD76900.1| Ribosomal RNA large subunit methyltransferase N [uncultured
bacterium]
Length = 374
Score = 200 bits (508), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 125/312 (40%), Positives = 176/312 (56%), Gaps = 27/312 (8%)
Query: 56 LLRSKFKPLT--STLHSVVD-SSDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRP 112
+ R K K T S L ++ D S D T K L +L +G +E V + P
Sbjct: 54 VFREKLKQETCISKLETITDQESRDGTRKFLFRLYDGSAIETVFI--------------P 99
Query: 113 GGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHA-SRLSN----IRNVV 167
R TLC+SSQVGC + C+FC+TG GF NLS EI+ QL A +L N I NVV
Sbjct: 100 EKTRGTLCVSSQVGCALNCSFCSTGKEGFNRNLSLAEIIGQLFLARDKLKNTPHQITNVV 159
Query: 168 FMGMGEPLNNYAALVEAVRIMT-GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVS 226
MGMGEPL NY +++A+ +M L + +S R+T+ST G+V + +F D +LAVS
Sbjct: 160 MMGMGEPLLNYQPVIDAMELMMHDLAYGLSKYRVTLSTSGVVPQLLQFKKDSIA-SLAVS 218
Query: 227 LHAPVQDVRCQIMPAARAFPLEKLMNALKEY-QKNSQQKIFIEYIMLDGVNDEEQHAHQL 285
LHAP ++R Q++P + +PLE LM ++Y +S++ I EY+ML G+ND A QL
Sbjct: 219 LHAPTNELREQLVPINKKYPLEVLMPVCRDYFPTDSKRCIVFEYVMLKGINDSLLQAKQL 278
Query: 286 GKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISG 345
+LL+ +NLIPFNP + + S + +FQ L + ++T VRK G DI G
Sbjct: 279 IRLLDNMPCKINLIPFNPFPK-TDYVCSDMQTILAFQDRLTKA-GVKTWVRKTRGDDIDG 336
Query: 346 ACGQLVVNLPDK 357
ACGQL + D+
Sbjct: 337 ACGQLAGDFKDR 348
>gi|304408290|ref|ZP_07389938.1| radical SAM enzyme, Cfr family [Paenibacillus curdlanolyticus YK9]
gi|304342759|gb|EFM08605.1| radical SAM enzyme, Cfr family [Paenibacillus curdlanolyticus YK9]
Length = 357
Score = 200 bits (508), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 111/339 (32%), Positives = 187/339 (55%), Gaps = 26/339 (7%)
Query: 22 GIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHSVVDSSDDVTTK 81
G K+ +W+++ ++ + +LL F T H+ +S+D T K
Sbjct: 24 GHKKFRATQVWEWLYRKRVTDYAAMTDVNPDCIALLAEHFAITTLEEHTKQESTDG-TIK 82
Query: 82 LLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGF 141
L++L +G +E V+MR+ L ++C+++QVGC +GC+FCA+G +
Sbjct: 83 FLLRLTDGNLIETVLMRHKFGL--------------SVCVTTQVGCNIGCSFCASGLLAK 128
Query: 142 KSNLSSGEIVEQLV-------HASRLSNIRNVVFMGMGEPLNNYAALVEAVRIMTGLP-F 193
+L+SGEIV Q++ A + + ++V MG+GEP +N+A +V+ + ++
Sbjct: 129 SRDLTSGEIVGQIMKVQLHLDQAGQGERVTHIVVMGIGEPFDNFANMVDFINVVKDHKGL 188
Query: 194 QVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNA 253
+ P+ ITVST G+ + I +F +NLA+SLHAP ++R +IM RA P+ KLM A
Sbjct: 189 AIGPRHITVSTSGLANKIYEFTDSNLQVNLAISLHAPNDELRTRIMKINRAIPIAKLMEA 248
Query: 254 LKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVV--VNLIPFNPIGSVSQFR 311
+ Y + ++I +EYI+L VND ++HA +L +L+ + + VNLIP+NP+ SQ++
Sbjct: 249 IDYYLAKTNRRITLEYILLKDVNDRKEHALELAELVGERRSLANVNLIPYNPVDEHSQYQ 308
Query: 312 TSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 350
S D + F L+ + +VR + G DI ACGQL
Sbjct: 309 RSEQDSIREFYDTLKKQ-GVSCSVRLEHGTDIDAACGQL 346
>gi|94988886|ref|YP_596987.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
pyogenes MGAS9429]
gi|94992778|ref|YP_600877.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
pyogenes MGAS2096]
gi|417856555|ref|ZP_12501614.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
pyogenes HKU QMH11M0907901]
gi|122986917|sp|Q1JAS5.1|RLMN_STRPB RecName: Full=Probable dual-specificity RNA methyltransferase RlmN;
AltName: Full=23S rRNA
(adenine(2503)-C(2))-methyltransferase; AltName:
Full=23S rRNA m2A2503 methyltransferase; AltName:
Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=tRNA (adenine(37)-C(2))-methyltransferase;
AltName: Full=tRNA m2A37 methyltransferase
gi|123382514|sp|Q1JKX6.1|RLMN_STRPC RecName: Full=Probable dual-specificity RNA methyltransferase RlmN;
AltName: Full=23S rRNA
(adenine(2503)-C(2))-methyltransferase; AltName:
Full=23S rRNA m2A2503 methyltransferase; AltName:
Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=tRNA (adenine(37)-C(2))-methyltransferase;
AltName: Full=tRNA m2A37 methyltransferase
gi|94542394|gb|ABF32443.1| radical SAM family enzyme [Streptococcus pyogenes MGAS9429]
gi|94546286|gb|ABF36333.1| Radical SAM family enzyme [Streptococcus pyogenes MGAS2096]
gi|387933510|gb|EIK41623.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
pyogenes HKU QMH11M0907901]
Length = 359
Score = 200 bits (508), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 120/343 (34%), Positives = 192/343 (55%), Gaps = 34/343 (9%)
Query: 22 GIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKF--KPLTSTLHSVVDSSDDVT 79
G KQ IW ++ + ++E ++ S+L F PL VV S D T
Sbjct: 21 GQKQFRATQIWDWLYKKRVQSFEEMTNISKDFVSILNDSFCVNPLK---QRVVQESADGT 77
Query: 80 TKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTM 139
K L +L +G +E V+MR ++ G ++C+++QVGC +GC FCA+G +
Sbjct: 78 VKYLFELPDGMLIETVLMR------QHYG--------HSVCVTTQVGCNIGCTFCASGLI 123
Query: 140 GFKSNLSSGEIVEQLVHASRLSNIR-------NVVFMGMGEPLNNYAALVEAVRIMT--- 189
+ +L+SGEI Q++ + + R +VV MG+GEP +NY ++ +R++
Sbjct: 124 KKQRDLNSGEITAQIMLVQKYFDDRKQGERVSHVVVMGIGEPFDNYKNVMCFLRVINDDN 183
Query: 190 GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEK 249
GL + + ITVST G+ H I F ++ +NLAVSLHAP D+R +IM R+FPLEK
Sbjct: 184 GLA--IGARHITVSTSGLAHKIRDFANEGVQVNLAVSLHAPNNDLRSRIMRVNRSFPLEK 241
Query: 250 LMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVV--VNLIPFNPIGSV 307
L +A++ Y + + +++ EYIML+ VND + A +L L +T + + VNLIP+NP+
Sbjct: 242 LFSAIEYYIEKTNRRVTFEYIMLNEVNDSIKQAQELADLTKTIRKLSYVNLIPYNPVSEH 301
Query: 308 SQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 350
Q+ S ++V +F +L+ + + VR++ G DI ACGQL
Sbjct: 302 DQYSRSLKERVLAFYDVLKKN-GVNCVVRQEHGTDIDAACGQL 343
>gi|386815051|ref|ZP_10102269.1| 23S rRNA m(2)A-2503 methyltransferase [Thiothrix nivea DSM 5205]
gi|386419627|gb|EIJ33462.1| 23S rRNA m(2)A-2503 methyltransferase [Thiothrix nivea DSM 5205]
Length = 409
Score = 200 bits (508), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 114/296 (38%), Positives = 174/296 (58%), Gaps = 31/296 (10%)
Query: 75 SDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFC 134
S D T K L++L +G +E V + P R TLC+SSQVGC + C FC
Sbjct: 119 SADGTHKWLLRLDDGNAIETVFI--------------PEDDRGTLCVSSQVGCALDCTFC 164
Query: 135 ATGTMGFKSNLSSGEIVEQLVHASRLSN--------IRNVVFMGMGEPLNNYAALVEAVR 186
+T GF NL++ EI+ QL A R I NVV MGMGEPL N+ + A+
Sbjct: 165 STARQGFNRNLTTAEIIGQLWVAKRTLQADPGGARVISNVVMMGMGEPLLNFDNVANALM 224
Query: 187 IMT-GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAF 245
+M + +S +R+T+ST G++ A+ + +D ++LAVSLHAP +VR Q++P R +
Sbjct: 225 LMMDDNAYGLSKRRVTLSTSGVLPALARL-ADTMDVSLAVSLHAPNNEVRNQLVPLNRKY 283
Query: 246 PLEKLMNALKEY---QKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFN 302
P+++LM +++ + + I EY+ML+G+ND+++HAHQL KLL+ +NLIPFN
Sbjct: 284 PIQELMAVCRQFLAKKTTERNHITWEYVMLEGINDKDEHAHQLVKLLKGIPSKINLIPFN 343
Query: 303 PIGSVSQFRTSSDDKVSSFQKILRGS-YNIRTTVRKQMGQDISGACGQLVVNLPDK 357
P ++++ SS++++ F+ IL + Y + T RK G+DI ACGQL + DK
Sbjct: 344 PFPE-TRYKRSSNNRIHRFRDILAAAGYTVIT--RKTRGEDIDAACGQLAGQVNDK 396
>gi|335420573|ref|ZP_08551611.1| radical SAM protein [Salinisphaera shabanensis E1L3A]
gi|334894932|gb|EGM33117.1| radical SAM protein [Salinisphaera shabanensis E1L3A]
Length = 393
Score = 200 bits (508), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 114/281 (40%), Positives = 160/281 (56%), Gaps = 31/281 (11%)
Query: 112 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQ------------LVHASR 159
P R+TLCISSQ+GC + C+FCATG G NL++ EIV Q LVH R
Sbjct: 118 PEADRATLCISSQIGCALDCSFCATGKQGLNRNLTTAEIVGQVWMAEHDLRAQGLVHGER 177
Query: 160 LSNIRNVVFMGMGEPLNNYAALVEAVRI-MTGLPFQVSPKRITVSTVGIVHAINKFHSDL 218
+ N+VFMGMGEPL NY A+V A+RI + F +S +R+TVST G+V +++ ++
Sbjct: 178 A--LSNIVFMGMGEPLANYRAVVPAIRILLDDYGFGLSKRRVTVSTSGMVPFMDRLREEV 235
Query: 219 PGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQK--IFIEYIMLDGVN 276
+ LAVSLHAP D+R +++P R +PL +LM A Y + Q++ + EY++L+GVN
Sbjct: 236 -DVALAVSLHAPTDDLRDELVPINRKYPLAELMGACDRYVEGKQRRAHVVYEYVLLNGVN 294
Query: 277 DEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVR 336
D + A L KLL +NLIPFN S + + ++ FQ IL +RTTVR
Sbjct: 295 DNPEQARGLVKLLADRPAKINLIPFNAFDG-SGYTRPDEARIRQFQDILHNK-GLRTTVR 352
Query: 337 KQMGQDISGACGQLV-----------VNLPDKISAKSTPPV 366
+ G DI ACGQLV +P ++ +K PV
Sbjct: 353 RTRGDDIDAACGQLVGRVRSKQKRHFREVPIRVESKRATPV 393
>gi|310642737|ref|YP_003947495.1| ribosomal RNA large subunit methyltransferase n [Paenibacillus
polymyxa SC2]
gi|309247687|gb|ADO57254.1| Ribosomal RNA large subunit methyltransferase N [Paenibacillus
polymyxa SC2]
Length = 355
Score = 200 bits (508), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 115/326 (35%), Positives = 177/326 (54%), Gaps = 27/326 (8%)
Query: 32 WKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHSVVD-SSDDVTTKLLVKLQNGG 90
W YV N + E +L A L +F +T LH + S D T K L L +
Sbjct: 42 WLYVKRINN--FSEMTNLSKALREKLEEQFSFVT--LHEITKLESKDGTVKFLFGLHDDH 97
Query: 91 FVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEI 150
+E VIMR++ +++C+++QVGC++GC FCA+ G K NL++GEI
Sbjct: 98 AIETVIMRHNYG--------------NSICVTTQVGCRIGCTFCASTLGGLKRNLTAGEI 143
Query: 151 VEQLVHASRL-----SNIRNVVFMGMGEPLNNYAALVEAVRIMTGLP-FQVSPKRITVST 204
Q+V A ++ + ++V MG GEP NY A + +R M + + ITVST
Sbjct: 144 TAQVVQAQKILDKTNERVSSIVIMGSGEPFENYEATMTFLRTMIHEKGLNIGQRHITVST 203
Query: 205 VGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQK 264
GIV I KF + +NLA+S+HAP +R ++MP R +P + +M++L+ Y + ++
Sbjct: 204 SGIVPNIYKFADEDTQINLAISIHAPNDALRSKLMPVNRRYPFKDVMDSLRYYLAKTGRR 263
Query: 265 IFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKI 324
I EY ++ GVND+ +HA +L +L+ VNLIP N + RTS D + +FQ+I
Sbjct: 264 ISFEYALIGGVNDQAEHAEELADVLKDMLCHVNLIPVNHVPERKYVRTSRSD-IFNFQRI 322
Query: 325 LRGSYNIRTTVRKQMGQDISGACGQL 350
L + T+R++ G DI+ ACGQL
Sbjct: 323 L-AEKGVNVTIRREQGHDIAAACGQL 347
>gi|25010575|ref|NP_734970.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
agalactiae NEM316]
gi|77413558|ref|ZP_00789746.1| radical SAM enzyme, Cfr family [Streptococcus agalactiae 515]
gi|81588871|sp|Q8E6Q7.1|RLMN_STRA3 RecName: Full=Probable dual-specificity RNA methyltransferase RlmN;
AltName: Full=23S rRNA
(adenine(2503)-C(2))-methyltransferase; AltName:
Full=23S rRNA m2A2503 methyltransferase; AltName:
Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=tRNA (adenine(37)-C(2))-methyltransferase;
AltName: Full=tRNA m2A37 methyltransferase
gi|23094928|emb|CAD46149.1| Unknown [Streptococcus agalactiae NEM316]
gi|77160387|gb|EAO71510.1| radical SAM enzyme, Cfr family [Streptococcus agalactiae 515]
Length = 368
Score = 200 bits (508), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 118/346 (34%), Positives = 193/346 (55%), Gaps = 34/346 (9%)
Query: 22 GIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKF--KPLTSTLHSVVDSSDDVT 79
G K+ IW ++ + +DE ++ +LL F PL +V S D T
Sbjct: 30 GEKKFRASQIWDWLYKKRVQSFDEMTNISKDFIALLNENFVVNPLK---QRIVQESADGT 86
Query: 80 TKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTM 139
K L +L +G +E V+MR +Y G ++C+++QVGC +GC FCA+G +
Sbjct: 87 VKYLFELPDGMLIETVLMR------QYYG--------LSVCVTTQVGCNIGCTFCASGLI 132
Query: 140 GFKSNLSSGEIVEQLVHASRLSNIR-------NVVFMGMGEPLNNYAALVEAVRIMT--- 189
+ +L++GEI Q++ + + R ++V MG+GEP +NY +++ +R +
Sbjct: 133 KKQRDLNNGEITAQIMLVQKYFDERGQGERVSHIVVMGIGEPFDNYTNVLKFLRTVNDDN 192
Query: 190 GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEK 249
GL + + ITVST G+ H I +F ++ +NLAVSLHAP ++R IM R+FPLEK
Sbjct: 193 GLA--IGARHITVSTSGLAHKIREFANEGVQVNLAVSLHAPNNELRSSIMRINRSFPLEK 250
Query: 250 LMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVV--VNLIPFNPIGSV 307
L A++ Y + + +++ EYIML+GVND ++A +L L + + + VNLIP+NP+
Sbjct: 251 LFAAIEYYIETTNRRVTFEYIMLNGVNDTPENAQELADLTKKIRKLSYVNLIPYNPVSEH 310
Query: 308 SQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVN 353
Q+ S ++V +F +L+ + + VR++ G DI ACGQL N
Sbjct: 311 DQYSRSPKERVEAFYDVLKKN-GVNCVVRQEHGTDIDAACGQLRSN 355
>gi|312194967|ref|YP_004015028.1| radical SAM enzyme, Cfr family [Frankia sp. EuI1c]
gi|311226303|gb|ADP79158.1| radical SAM enzyme, Cfr family [Frankia sp. EuI1c]
Length = 397
Score = 200 bits (508), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 117/294 (39%), Positives = 165/294 (56%), Gaps = 32/294 (10%)
Query: 76 DDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCA 135
D T K + +G +E+V+MRY R+T+C+SSQ GC MGC FCA
Sbjct: 111 DGATRKTAWRTVDGATIESVLMRYPD--------------RATVCVSSQAGCGMGCPFCA 156
Query: 136 TGTMGFKSNLSSGEIVEQLVHASRL-------------SNIRNVVFMGMGEPLNNYAALV 182
TG G NL+ EIVEQ+V A+R+ + + NVVFMGMGEPL NY ALV
Sbjct: 157 TGQGGLTRNLTVAEIVEQVVDAARVLRRGGLPAGQATDTRLSNVVFMGMGEPLANYKALV 216
Query: 183 EAVR-IMTGLP--FQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIM 239
A+R I P +S + +TVSTVG+V AI + + + LAVSLHAP ++R ++
Sbjct: 217 TALRRISDPAPDGLGISARTLTVSTVGLVPAIGRLAGEGLPVRLAVSLHAPDDELRDTLV 276
Query: 240 PAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLI 299
P + + ++++A +Y + ++I IEY ++DGVND+ + A LG+LL V VNLI
Sbjct: 277 PINTRWKVAEVLDAAWDYAARTGRRISIEYALIDGVNDQPERADLLGRLLRDRPVHVNLI 336
Query: 300 PFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVN 353
P NP S + S+ F LR + I TTVR G++I+ ACGQL +
Sbjct: 337 PLNPTRG-SSWHASAPAGEREFVARLR-ARGITTTVRDTRGREIAAACGQLAAD 388
>gi|403378882|ref|ZP_10920939.1| ribosomal RNA large subunit methyltransferase N [Paenibacillus sp.
JC66]
Length = 349
Score = 199 bits (507), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 119/329 (36%), Positives = 190/329 (57%), Gaps = 32/329 (9%)
Query: 32 WKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHSVVD-SSDDVTTKLLVKLQNGG 90
W YV + + E +LP LL +F+ +T L + S D T K L +LQ+
Sbjct: 33 WLYVKRVGS--FAEMTNLPKPLRDLLAEQFQFVT--LKEITQHQSKDGTVKFLFELQDKH 88
Query: 91 FVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEI 150
+E VIM++ S G +++C+++QVGC++GC FCA+ G K NL++GEI
Sbjct: 89 AIETVIMKH--SYG------------NSVCVTTQVGCRIGCTFCASTLGGLKRNLTAGEI 134
Query: 151 VEQLVHASRL-----SNIRNVVFMGMGEPLNNYAALVEAVRIM---TGLPFQVSPKRITV 202
V Q+V + ++ + ++V MG+GEP NY A++ ++IM GL + + ITV
Sbjct: 135 VAQIVQSQKMLDASGERVSSIVIMGIGEPFENYEAMISFLKIMIHDKGL--NIGQRHITV 192
Query: 203 STVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQ 262
ST GIV I +F + +NLA+S+HAP +R ++MP R +P L+ A K Y + +
Sbjct: 193 STSGIVPNIYRFTEERTQINLAISIHAPNDALRSKLMPVNRRYPFADLIAACKHYVEVTG 252
Query: 263 QKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVV-VNLIPFNPIGSVSQFRTSSDDKVSSF 321
+++ EY ++ GVND+ +HA +L ++L+ + VNLIP N + + RT DD + +F
Sbjct: 253 RRLTFEYALMGGVNDQPEHAEELAQVLKEIPLCHVNLIPVNFVVERNFVRTERDD-IFTF 311
Query: 322 QKILRGSYNIRTTVRKQMGQDISGACGQL 350
Q+IL + I TT+R++ G DI+ ACGQL
Sbjct: 312 QRILE-KHKITTTIRREQGSDIAAACGQL 339
>gi|290580974|ref|YP_003485366.1| hypothetical protein SmuNN2025_1448 [Streptococcus mutans NN2025]
gi|254997873|dbj|BAH88474.1| hypothetical protein [Streptococcus mutans NN2025]
Length = 361
Score = 199 bits (507), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 119/356 (33%), Positives = 192/356 (53%), Gaps = 34/356 (9%)
Query: 22 GIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKF--KPLTSTLHSVVDSSDDVT 79
G K+ IW ++ ++E +L +LL F PL +V S D T
Sbjct: 21 GEKKFRATQIWDWLYRKRVQSFEEMTNLSKDFIALLNENFLVNPLK---QRIVQESADGT 77
Query: 80 TKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTM 139
K L +L +G +E V+MR L ++C+++QVGC +GC FCA+G +
Sbjct: 78 VKYLFELPDGMLIETVLMRQHYGL--------------SVCVTTQVGCNIGCTFCASGLI 123
Query: 140 GFKSNLSSGEIVEQLVHASRL-------SNIRNVVFMGMGEPLNNYAALVEAVRIMT--- 189
+ +L++GEI Q++ + I +VV MG+GEP +NY +++ +R +
Sbjct: 124 KKQRDLNNGEITAQIMLVQKYFDERGQGERISHVVVMGIGEPFDNYDNVLKFLRTINDDN 183
Query: 190 GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEK 249
GL + + ITVST G+ H I F ++ +NLA+SLHAP ++R IM R+FPLEK
Sbjct: 184 GLA--IGARHITVSTSGLAHKIRDFANEGVQVNLAISLHAPNNELRSSIMRINRSFPLEK 241
Query: 250 LMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVV--VNLIPFNPIGSV 307
L A++ Y + + +++ EYIML+GVND ++A +L L + + + VNLIP+NP+
Sbjct: 242 LFAAIEYYIETTNRRVTFEYIMLNGVNDNPENAQELADLTKKIRKLSYVNLIPYNPVTEH 301
Query: 308 SQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDKISAKST 363
Q+ S ++V +F +L+ + + VR++ G DI ACGQL N + K+T
Sbjct: 302 DQYSRSPKERVDAFYDVLKKN-GVNCVVRQEHGTDIDAACGQLRSNTMKRDREKAT 356
>gi|418323813|ref|ZP_12935075.1| 23S rRNA m2A2503 methyltransferase [Staphylococcus pettenkoferi
VCU012]
gi|365229159|gb|EHM70322.1| 23S rRNA m2A2503 methyltransferase [Staphylococcus pettenkoferi
VCU012]
Length = 336
Score = 199 bits (507), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 112/327 (34%), Positives = 180/327 (55%), Gaps = 25/327 (7%)
Query: 31 IWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHSVV-DSSDDVTTKLLVKLQNG 89
I++++ E +DE +L LL F +TL +VV S D T K L +LQ+G
Sbjct: 18 IYQWLYEKRVDSFDEMSNLSKPLRELLEEHFA--ITTLSTVVKQESRDGTIKFLFQLQDG 75
Query: 90 GFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGE 149
+E V+MR+D +++C+++QVGC++GC FCA+ G NL +GE
Sbjct: 76 YTIETVLMRHDYG--------------NSVCVTTQVGCRIGCTFCASSIGGLNRNLEAGE 121
Query: 150 IVEQLVHASRL-----SNIRNVVFMGMGEPLNNYAALVEAVRIMT-GLPFQVSPKRITVS 203
IV Q++ + + +V MG+GEP NY +++ +RI+ + + ITVS
Sbjct: 122 IVAQVLTVQKALDATDERVSQIVIMGIGEPFENYDEMMDFLRIVNHDRSLNIGARHITVS 181
Query: 204 TVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQ 263
T GI+ I F + +N AVSLH ++R ++MP RA+ ++KLM+A+ YQ+ + +
Sbjct: 182 TSGIIPRIYDFAEEDIQINFAVSLHGANNEIRSRLMPINRAYDVDKLMDAIDYYQEQTNR 241
Query: 264 KIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQK 323
++ EY + GVND+ +HA +L L++ VNLIP N + + RT +D + F+K
Sbjct: 242 RVTFEYGLFGGVNDQLEHARELAALIKHLNCHVNLIPVNHVPERNYVRTPKED-IFKFEK 300
Query: 324 ILRGSYNIRTTVRKQMGQDISGACGQL 350
L+ I T+R++ G DI ACGQL
Sbjct: 301 ELK-RLGINATIRREQGSDIDAACGQL 326
>gi|357012409|ref|ZP_09077408.1| ribosomal RNA large subunit methyltransferase N [Paenibacillus
elgii B69]
Length = 361
Score = 199 bits (507), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 120/330 (36%), Positives = 187/330 (56%), Gaps = 34/330 (10%)
Query: 32 WKYVIENPNCEWDEFPSLPSAAYSLLRSKFK--PLTSTLHSVVDSSDDVTTKLLVKLQNG 89
W YV + E E +LP L+ +F LT H S D T K L +L +
Sbjct: 45 WLYVKRVSSFE--EMTNLPKPLRDRLKEQFDFVTLTEVAHY---RSKDGTVKFLFELNDE 99
Query: 90 GFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGE 149
+E VIM++ S G +++C+++QVGC++GC FCA+ G K NL+SGE
Sbjct: 100 NAIETVIMKH--SYG------------NSICVTTQVGCRVGCTFCASTLGGLKRNLTSGE 145
Query: 150 IVEQLVHASRL-----SNIRNVVFMGMGEPLNNYAALVEAVRIM---TGLPFQVSPKRIT 201
I+ Q+V A +L + ++V MG+GEP NY A+++ +++M GL + + IT
Sbjct: 146 IIAQVVKAQQLLDETQERVSSIVIMGIGEPFENYDAVMKFLKVMIHPKGL--NIGQRHIT 203
Query: 202 VSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNS 261
VST GIV I +F + +NLA+S+HAP +R ++MP R +P +L+ A + Y +
Sbjct: 204 VSTSGIVPNIYRFADEDTQINLAISIHAPNDVLRSKLMPVNRRYPFAELIEACQYYVAKT 263
Query: 262 QQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVV-VNLIPFNPIGSVSQFRTSSDDKVSS 320
++I EY ++ GVND+ +HA +L K+L+ F + VNLIP N + RT +D + +
Sbjct: 264 GRRITFEYALMGGVNDQAEHAEELAKVLKAFPMAHVNLIPVNFVSERDYVRTPRND-IFT 322
Query: 321 FQKILRGSYNIRTTVRKQMGQDISGACGQL 350
FQ+IL + I T+R++ G DI+ ACGQL
Sbjct: 323 FQRILERN-KINATIRREQGSDIAAACGQL 351
>gi|260588063|ref|ZP_05853976.1| radical SAM enzyme, Cfr family [Blautia hansenii DSM 20583]
gi|260541590|gb|EEX22159.1| radical SAM enzyme, Cfr family [Blautia hansenii DSM 20583]
Length = 348
Score = 199 bits (507), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 118/331 (35%), Positives = 185/331 (55%), Gaps = 21/331 (6%)
Query: 31 IWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHSVVDSSDDVTTKLLVKLQNGG 90
I++++ + +DE +L +A L+ + T + V S D T K L L +G
Sbjct: 31 IYEWLHQKQAESFDEMSNLSAALREKLKERCVLTTLKMLEVQTSKIDGTQKYLFALPDGN 90
Query: 91 FVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEI 150
VE+V+M+Y +++CISSQVGCKMGC FCA+ G+ NL E+
Sbjct: 91 VVESVLMKYKHG--------------NSVCISSQVGCKMGCRFCASTIGGWTRNLLPSEM 136
Query: 151 VEQLVHASRLSNIR--NVVFMGMGEPLNNYAALVEAVRIMTGLP-FQVSPKRITVSTVGI 207
+EQ+ +LS R NVV MG GEPL+NY L++ +R++T +S + +TVST GI
Sbjct: 137 LEQIYRIQKLSGERVSNVVVMGTGEPLDNYENLLQFIRLLTDENGLHISQRNLTVSTCGI 196
Query: 208 VHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFI 267
V + + + LA+SLHA Q+ R ++MP A + +E+++ A + Y + + +++
Sbjct: 197 VPKMYALAEENLQITLAISLHASNQEKRAELMPIANKYSIEEVLEACRNYFEKTGRRLTF 256
Query: 268 EYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKV-SSFQKILR 326
EY ++ G ND ++ A +L +L++ VNLIP NPI + SD KV +F+ L
Sbjct: 257 EYSLVGGKNDTKEDAEELARLIKGLNCHVNLIPVNPIKERDYVQ--SDKKVIENFKNKLE 314
Query: 327 GSYNIRTTVRKQMGQDISGACGQLVVNLPDK 357
Y I T+R++MG+DI GACGQL + DK
Sbjct: 315 -KYQINVTIRREMGRDIDGACGQLRKSYIDK 344
>gi|77408383|ref|ZP_00785123.1| radical SAM enzyme, Cfr family [Streptococcus agalactiae COH1]
gi|417004674|ref|ZP_11943313.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
agalactiae FSL S3-026]
gi|421147564|ref|ZP_15607249.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
agalactiae GB00112]
gi|77172986|gb|EAO76115.1| radical SAM enzyme, Cfr family [Streptococcus agalactiae COH1]
gi|341577656|gb|EGS28063.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
agalactiae FSL S3-026]
gi|401685684|gb|EJS81679.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
agalactiae GB00112]
Length = 368
Score = 199 bits (507), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 118/346 (34%), Positives = 193/346 (55%), Gaps = 34/346 (9%)
Query: 22 GIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKF--KPLTSTLHSVVDSSDDVT 79
G K+ IW ++ + +DE ++ +LL F PL +V S D T
Sbjct: 30 GEKKFRASQIWDWLYKKRVQSFDEMTNISKDFIALLNENFVVNPLK---QRIVQESADGT 86
Query: 80 TKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTM 139
K L +L +G +E V+MR +Y G ++C+++QVGC +GC FCA+G +
Sbjct: 87 VKYLFELPDGMLIETVLMR------QYYG--------LSVCVTTQVGCNIGCTFCASGLI 132
Query: 140 GFKSNLSSGEIVEQLVHASRLSNIR-------NVVFMGMGEPLNNYAALVEAVRIMT--- 189
+ +L++GEI Q++ + + R ++V MG+GEP +NY +++ +R +
Sbjct: 133 KKQRDLNNGEITAQIMLVQKYFDERGQGERVSHIVVMGIGEPFDNYTNVLKFLRTVNDDN 192
Query: 190 GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEK 249
GL + + ITVST G+ H I +F ++ +NLAVSLHAP ++R IM R+FPLEK
Sbjct: 193 GLA--IGARHITVSTSGLAHKIREFANEGVQVNLAVSLHAPNNELRSSIMRINRSFPLEK 250
Query: 250 LMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVV--VNLIPFNPIGSV 307
L A++ Y + + +++ EYIML+GVND ++A +L L + + + VNLIP+NP+
Sbjct: 251 LFAAIEYYIETTNRRVTFEYIMLNGVNDTPENAQELADLTKKIRKLSYVNLIPYNPVSEH 310
Query: 308 SQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVN 353
Q+ S ++V +F +L+ + + VR++ G DI ACGQL N
Sbjct: 311 DQYSRSPKERVEAFYDVLKKN-GVNCVVRQEHGTDIDAACGQLRSN 355
>gi|154685991|ref|YP_001421152.1| ribosomal RNA large subunit methyltransferase N [Bacillus
amyloliquefaciens FZB42]
gi|375362219|ref|YP_005130258.1| ribosomal RNA large subunit methyltransferase N [Bacillus
amyloliquefaciens subsp. plantarum CAU B946]
gi|385264701|ref|ZP_10042788.1| ribosomal RNA large subunit methyltransferase N [Bacillus sp. 5B6]
gi|394993913|ref|ZP_10386652.1| ribosomal RNA large subunit methyltransferase N [Bacillus sp. 916]
gi|421731755|ref|ZP_16170878.1| ribosomal RNA large subunit methyltransferase N [Bacillus
amyloliquefaciens subsp. plantarum M27]
gi|429505126|ref|YP_007186310.1| ribosomal RNA large subunit methyltransferase N [Bacillus
amyloliquefaciens subsp. plantarum AS43.3]
gi|451347054|ref|YP_007445685.1| ribosomal RNA large subunit methyltransferase N [Bacillus
amyloliquefaciens IT-45]
gi|205829638|sp|A7Z4J5.1|RLMN_BACA2 RecName: Full=Probable dual-specificity RNA methyltransferase RlmN;
AltName: Full=23S rRNA
(adenine(2503)-C(2))-methyltransferase; AltName:
Full=23S rRNA m2A2503 methyltransferase; AltName:
Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=tRNA (adenine(37)-C(2))-methyltransferase;
AltName: Full=tRNA m2A37 methyltransferase
gi|154351842|gb|ABS73921.1| YloN [Bacillus amyloliquefaciens FZB42]
gi|371568213|emb|CCF05063.1| ribosomal RNA large subunit methyltransferase N [Bacillus
amyloliquefaciens subsp. plantarum CAU B946]
gi|385149197|gb|EIF13134.1| ribosomal RNA large subunit methyltransferase N [Bacillus sp. 5B6]
gi|393805237|gb|EJD66617.1| ribosomal RNA large subunit methyltransferase N [Bacillus sp. 916]
gi|407073968|gb|EKE46958.1| ribosomal RNA large subunit methyltransferase N [Bacillus
amyloliquefaciens subsp. plantarum M27]
gi|429486716|gb|AFZ90640.1| ribosomal RNA large subunit methyltransferase N [Bacillus
amyloliquefaciens subsp. plantarum AS43.3]
gi|449850812|gb|AGF27804.1| ribosomal RNA large subunit methyltransferase N [Bacillus
amyloliquefaciens IT-45]
Length = 363
Score = 199 bits (507), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 114/328 (34%), Positives = 185/328 (56%), Gaps = 27/328 (8%)
Query: 31 IWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHSVVDSSDDVTTKLLVKLQNGG 90
I++++ E +DE +L + L S F LT+ +V +S D T K L +L +G
Sbjct: 45 IFEWLYEKRVSSFDEMTNLSKSLREKLESNF-VLTTLKTAVKQTSQDGTMKFLFELHDGY 103
Query: 91 FVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEI 150
+E V+MR++ +++C+++QVGC++GC FCA+ G K NL +GEI
Sbjct: 104 TIETVLMRHEYG--------------NSVCVTTQVGCRIGCTFCASTLGGLKRNLEAGEI 149
Query: 151 VEQLVHASRL-----SNIRNVVFMGMGEPLNNYAALVEAVRIMT---GLPFQVSPKRITV 202
V Q+V + + +VV MG+GEP +N+ ++ ++I+ GL + + ITV
Sbjct: 150 VAQVVKVQKALDETDERVSSVVIMGIGEPFDNFNEMLAFLKIINHDKGL--NIGARHITV 207
Query: 203 STVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQ 262
ST GI+ I F +N A+SLHAP ++R ++MP +A+ L LM A+K Y + +
Sbjct: 208 STSGIIPKIYDFADQKMQINFAISLHAPNTEIRSRLMPINKAYKLPDLMEAVKYYIEKTG 267
Query: 263 QKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQ 322
++I EY + GVND+ +HA +L +LL+ + VNLIP N + RT D++ +F+
Sbjct: 268 RRISFEYGLFGGVNDQVEHAEELAELLKDVKCHVNLIPVNYVPERDYVRTPR-DQIFAFE 326
Query: 323 KILRGSYNIRTTVRKQMGQDISGACGQL 350
K L+ S + T+R++ G DI ACGQL
Sbjct: 327 KTLK-SRGVNVTIRREQGHDIDAACGQL 353
>gi|145295923|ref|YP_001138744.1| ribosomal RNA large subunit methyltransferase N [Corynebacterium
glutamicum R]
gi|417971672|ref|ZP_12612595.1| ribosomal RNA large subunit methyltransferase N [Corynebacterium
glutamicum S9114]
gi|205829740|sp|A4QF26.1|RLMN_CORGB RecName: Full=Probable dual-specificity RNA methyltransferase RlmN;
AltName: Full=23S rRNA
(adenine(2503)-C(2))-methyltransferase; AltName:
Full=23S rRNA m2A2503 methyltransferase; AltName:
Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=tRNA (adenine(37)-C(2))-methyltransferase;
AltName: Full=tRNA m2A37 methyltransferase
gi|140845843|dbj|BAF54842.1| hypothetical protein [Corynebacterium glutamicum R]
gi|344044154|gb|EGV39835.1| ribosomal RNA large subunit methyltransferase N [Corynebacterium
glutamicum S9114]
Length = 366
Score = 199 bits (507), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 124/321 (38%), Positives = 175/321 (54%), Gaps = 37/321 (11%)
Query: 49 LPSAAYSLLRSKFKPLTSTLHSVVDSSDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNG 108
LP A ++ P + V+++ DD T K L KL +G +E+V+MRY
Sbjct: 64 LPEGARQEVKDALFPTLMSPLRVIETDDDTTQKTLWKLHDGTLLESVLMRYSD------- 116
Query: 109 KPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHAS--------RL 160
RSTLCISSQ GC M C FCATG G NLS GEIV+Q+ +A+ RL
Sbjct: 117 -------RSTLCISSQAGCGMACPFCATGQGGLDRNLSIGEIVDQVRNAAATMQAEGGRL 169
Query: 161 SNIRNVVFMGMGEPLNNYAALVEAVRIMTG---LPFQVSPKRITVSTVGIVHAINKFHSD 217
SNI VFMGMGEPL NY +V AVR +T F +S + +TVSTVG+ AI K +
Sbjct: 170 SNI---VFMGMGEPLANYKRVVSAVRQITQPSPAGFGISQRSVTVSTVGLAPAIRKLADE 226
Query: 218 LPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVND 277
+ LAVSLH P ++R ++P +P+ ++++A + Y S +++ IEY ++ VND
Sbjct: 227 EMSVTLAVSLHTPDDELRDTLVPVNNRWPVAEVLDAARYYADKSGRRVSIEYALIRDVND 286
Query: 278 EEQHAHQLGKLLETF---QVVVNLIPFNPIGSVSQFRTSSDDKVSSFQK--ILRGSYNIR 332
++ A LG+ L +V VNLIP NP S++ + + F + I +G +
Sbjct: 287 QDWRADMLGEKLHKALGSRVHVNLIPLNPTPG-SKWDAAPKARQDEFVRRVIAKG---VP 342
Query: 333 TTVRKQMGQDISGACGQLVVN 353
TVR GQ+I+ ACGQL
Sbjct: 343 CTVRDTKGQEIAAACGQLAAE 363
>gi|384265157|ref|YP_005420864.1| ribosomal RNA large subunit methyltransferase N [Bacillus
amyloliquefaciens subsp. plantarum YAU B9601-Y2]
gi|387898154|ref|YP_006328450.1| Ribosomal RNA large subunit methyltransferase N 2 [Bacillus
amyloliquefaciens Y2]
gi|452855522|ref|YP_007497205.1| 23S rRNA m2A2503 methyltransferase [Bacillus amyloliquefaciens
subsp. plantarum UCMB5036]
gi|380498510|emb|CCG49548.1| ribosomal RNA large subunit methyltransferase N [Bacillus
amyloliquefaciens subsp. plantarum YAU B9601-Y2]
gi|387172264|gb|AFJ61725.1| Ribosomal RNA large subunit methyltransferase N 2 [Bacillus
amyloliquefaciens Y2]
gi|452079782|emb|CCP21539.1| 23S rRNA m2A2503 methyltransferase [Bacillus amyloliquefaciens
subsp. plantarum UCMB5036]
Length = 363
Score = 199 bits (507), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 114/328 (34%), Positives = 185/328 (56%), Gaps = 27/328 (8%)
Query: 31 IWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHSVVDSSDDVTTKLLVKLQNGG 90
I++++ E +DE +L + L S F LT+ +V +S D T K L +L +G
Sbjct: 45 IFEWLYEKRVSSFDEMTNLSKSLREKLESHF-VLTTLKTAVKQTSQDGTMKFLFELHDGY 103
Query: 91 FVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEI 150
+E V+MR++ +++C+++QVGC++GC FCA+ G K NL +GEI
Sbjct: 104 TIETVLMRHEYG--------------NSVCVTTQVGCRIGCTFCASTLGGLKRNLEAGEI 149
Query: 151 VEQLVHASRL-----SNIRNVVFMGMGEPLNNYAALVEAVRIMT---GLPFQVSPKRITV 202
V Q+V + + +VV MG+GEP +N+ ++ ++I+ GL + + ITV
Sbjct: 150 VAQVVKVQKALDETDERVSSVVIMGIGEPFDNFNEMLAFLKIINHDKGL--NIGARHITV 207
Query: 203 STVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQ 262
ST GI+ I F +N A+SLHAP ++R ++MP +A+ L LM A+K Y + +
Sbjct: 208 STSGIIPKIYDFADQKMQINFAISLHAPNTEIRSRLMPINKAYKLPDLMEAVKYYIEKTG 267
Query: 263 QKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQ 322
++I EY + GVND+ +HA +L +LL+ + VNLIP N + RT D++ +F+
Sbjct: 268 RRISFEYGLFGGVNDQVEHAEELAELLKDVKCHVNLIPVNYVPERDYVRTPR-DQIFAFE 326
Query: 323 KILRGSYNIRTTVRKQMGQDISGACGQL 350
K L+ S + T+R++ G DI ACGQL
Sbjct: 327 KTLK-SRGVNVTIRREQGHDIDAACGQL 353
>gi|50914628|ref|YP_060600.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
pyogenes MGAS10394]
gi|139473446|ref|YP_001128162.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
pyogenes str. Manfredo]
gi|81371810|sp|Q5XAZ6.1|RLMN_STRP6 RecName: Full=Probable dual-specificity RNA methyltransferase RlmN;
AltName: Full=23S rRNA
(adenine(2503)-C(2))-methyltransferase; AltName:
Full=23S rRNA m2A2503 methyltransferase; AltName:
Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=tRNA (adenine(37)-C(2))-methyltransferase;
AltName: Full=tRNA m2A37 methyltransferase
gi|205829905|sp|A2RDK1.1|RLMN_STRPG RecName: Full=Probable dual-specificity RNA methyltransferase RlmN;
AltName: Full=23S rRNA
(adenine(2503)-C(2))-methyltransferase; AltName:
Full=23S rRNA m2A2503 methyltransferase; AltName:
Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=tRNA (adenine(37)-C(2))-methyltransferase;
AltName: Full=tRNA m2A37 methyltransferase
gi|50903702|gb|AAT87417.1| Florfenicol resistance protein [Streptococcus pyogenes MGAS10394]
gi|134271693|emb|CAM29926.1| radical SAM superfamily protein [Streptococcus pyogenes str.
Manfredo]
Length = 359
Score = 199 bits (507), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 120/343 (34%), Positives = 192/343 (55%), Gaps = 34/343 (9%)
Query: 22 GIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKF--KPLTSTLHSVVDSSDDVT 79
G KQ IW ++ + ++E ++ S+L F PL VV S D T
Sbjct: 21 GQKQFRATQIWDWLYKKRVQSFEEMTNISKDFVSILNDSFCVNPLK---QRVVQESADGT 77
Query: 80 TKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTM 139
K L +L +G +E V+MR ++ G ++C+++QVGC +GC FCA+G +
Sbjct: 78 VKYLFELPDGMLIETVLMR------QHYG--------HSVCVTTQVGCNIGCTFCASGLI 123
Query: 140 GFKSNLSSGEIVEQLVHASRLSNIR-------NVVFMGMGEPLNNYAALVEAVRIMT--- 189
+ +L+SGEI Q++ + + R +VV MG+GEP +NY ++ +R++
Sbjct: 124 KKQRDLNSGEITAQIMLVQKYFDDRKQGERVSHVVVMGIGEPFDNYKNVMCFLRVINDDN 183
Query: 190 GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEK 249
GL + + ITVST G+ H I F ++ +NLAVSLHAP D+R +IM R+FPLEK
Sbjct: 184 GLA--IGARHITVSTSGLAHKIRDFANEGVQVNLAVSLHAPNNDLRSRIMRVNRSFPLEK 241
Query: 250 LMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVV--VNLIPFNPIGSV 307
L +A++ Y + + +++ EYIML+ VND + A +L L +T + + VNLIP+NP+
Sbjct: 242 LFSAIEYYIEKTNRRVTFEYIMLNEVNDSIKQAQELADLTKTIRKLSYVNLIPYNPVSEH 301
Query: 308 SQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 350
Q+ S ++V +F +L+ + + VR++ G DI ACGQL
Sbjct: 302 DQYSRSPKERVLAFYDVLKKN-GVNCVVRQEHGTDIDAACGQL 343
>gi|308071465|ref|YP_003873070.1| hypothetical protein PPE_04773 [Paenibacillus polymyxa E681]
gi|305860744|gb|ADM72532.1| Conserved hypothetical protein [Paenibacillus polymyxa E681]
Length = 365
Score = 199 bits (507), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 114/330 (34%), Positives = 179/330 (54%), Gaps = 26/330 (7%)
Query: 31 IWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHSVVDSSDDVTTKLLVKLQNGG 90
+W + ++ + LL F T H V S D T K L +LQ+G
Sbjct: 31 VWDALYRKRVTDFATMAEIHEDCTRLLAEHFSIETLEEH-VKQQSADGTVKFLFRLQDGN 89
Query: 91 FVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEI 150
+E V+MR+ L ++C+++QVGC +GC+FCA+G + +LSSGEI
Sbjct: 90 LIETVLMRHKFGL--------------SVCVTTQVGCNIGCSFCASGLLKKSRDLSSGEI 135
Query: 151 VEQLVHASRL-------SNIRNVVFMGMGEPLNNYAALVEAVRIMTGLP-FQVSPKRITV 202
VEQ++ + +VV MG+GEP +N+ L + +R++ + P+ ITV
Sbjct: 136 VEQIMKVQLYLDQERPGDQVSHVVVMGIGEPFDNFVNLSDFIRVIKDHKGLAIGPRHITV 195
Query: 203 STVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQ 262
ST G+ I +F +NLA+SLHAP ++R +IM RA P+EKLM A+ Y +
Sbjct: 196 STSGLADKIIEFADSDLHVNLAISLHAPNNEIRTRIMKINRAIPIEKLMQAIDYYLDKTN 255
Query: 263 QKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVV--VNLIPFNPIGSVSQFRTSSDDKVSS 320
++I +EYI+L VND ++HA +L +L+ + + VNLIP+NP+ SQ++ S + ++
Sbjct: 256 RRITLEYILLKDVNDGKEHALELAELVGHRRNLANVNLIPYNPVDEHSQYQRSESESITG 315
Query: 321 FQKILRGSYNIRTTVRKQMGQDISGACGQL 350
F +L+ I +VR + G DI ACGQL
Sbjct: 316 FYDVLK-KQGISCSVRLEHGVDIDAACGQL 344
>gi|358067540|ref|ZP_09154018.1| cfr family radical SAM enzyme [Johnsonella ignava ATCC 51276]
gi|356694193|gb|EHI55856.1| cfr family radical SAM enzyme [Johnsonella ignava ATCC 51276]
Length = 344
Score = 199 bits (507), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 118/333 (35%), Positives = 187/333 (56%), Gaps = 23/333 (6%)
Query: 31 IWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHSVV--DSSDDVTTKLLVKLQN 88
I++++ ++ E ++PS L ++ S L V+ +S D T K L KL +
Sbjct: 29 IYEWIHIKHISDFKEMNNVPSELKKKLAKEY--YISGLKEVMFKESPIDGTRKYLFKLDD 86
Query: 89 GGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSG 148
G +E+V MRY +++CISSQVGC+MGC FCA+ G NL++
Sbjct: 87 GNIIESVFMRYKHG--------------NSVCISSQVGCRMGCTFCASTLGGLVRNLTNA 132
Query: 149 EIVEQLVHASRL--SNIRNVVFMGMGEPLNNYAALVEAVRIMTGLP-FQVSPKRITVSTV 205
E++ Q+ R I N+V MG+GEP++NY +V V +++ + +S + IT+ST
Sbjct: 133 EMLAQVYSIGRSVGERISNIVIMGVGEPMDNYENIVSFVHMISDIHGLNISQRNITISTC 192
Query: 206 GIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKI 265
GIV I K + + LA+SLHAP R ++MP A + + ++++A Y K + +++
Sbjct: 193 GIVPQIKKLADEKLSVTLALSLHAPDNITRKRLMPVAEIYDINEVLDACSYYFKKTGRRV 252
Query: 266 FIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKIL 325
EY ++ GVND +Q A++L KL++ + VNLIP NPI Q+R S K F+ +L
Sbjct: 253 SFEYALVAGVNDSKQEAYKLIKLIKNQKAHVNLIPVNPIEE-RQYRQSDKKKAEDFKNLL 311
Query: 326 RGSYNIRTTVRKQMGQDISGACGQLVVNLPDKI 358
+ I TT+R++MG+DI GACGQL + D I
Sbjct: 312 LKA-GINTTIRREMGRDIDGACGQLRRHYEDGI 343
>gi|387879094|ref|YP_006309397.1| Fe-S-cluster redox enzyme/radical SAM enzyme, Cfr family
[Streptococcus parasanguinis FW213]
gi|386792549|gb|AFJ25584.1| Fe-S-cluster redox enzyme/radical SAM enzyme, Cfr family
[Streptococcus parasanguinis FW213]
Length = 362
Score = 199 bits (507), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 119/349 (34%), Positives = 192/349 (55%), Gaps = 34/349 (9%)
Query: 19 EKAGIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKF--KPLTSTLHSVVDSSD 76
E+ G K+ IW+++ ++E +L + L +F PL +V S
Sbjct: 18 EENGEKKFRAAQIWEWLYRKRVQSFEEMTNLSKDLIAKLNDQFVVNPLK---QRIVQESA 74
Query: 77 DVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCAT 136
D T K L +L +G +E V+MR L ++C+++QVGC +GC FCA+
Sbjct: 75 DGTVKYLFELPDGMLIETVLMRQHYGL--------------SVCVTTQVGCNIGCTFCAS 120
Query: 137 GTMGFKSNLSSGEIVEQLVHASRLSNIR-------NVVFMGMGEPLNNYAALVEAVRIMT 189
G + + +L++GEIV Q++ + + R ++V MG+GEP +NY +++ +R +
Sbjct: 121 GLIKKQRDLNNGEIVSQIMLVQKYFDERGQDERVSHIVVMGIGEPFDNYNNVLKFIRTVN 180
Query: 190 ---GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFP 246
GL + + ITVST G+ H I F ++ +NLAVSLHAP D+R IM RAFP
Sbjct: 181 DDKGLA--IGARHITVSTSGLAHKIRDFANEGVQVNLAVSLHAPNNDLRSSIMKINRAFP 238
Query: 247 LEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVV--VNLIPFNPI 304
+EKL A++ Y + + +++ EYIML+ VND + A +L +LL+ + + VNLIP+NP+
Sbjct: 239 IEKLFAAIEYYIETTNRRVTFEYIMLNEVNDGVEQALELAELLKNIKKLSYVNLIPYNPV 298
Query: 305 GSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVN 353
Q+ S ++V +F L+ + + VR++ G DI ACGQL N
Sbjct: 299 SEHDQYSRSPKERVMAFYDTLK-KHGVNCVVRQEHGTDIDAACGQLRSN 346
>gi|78188796|ref|YP_379134.1| hypothetical protein Cag_0825 [Chlorobium chlorochromatii CaD3]
gi|123770876|sp|Q3ASD4.1|RLMN_CHLCH RecName: Full=Probable dual-specificity RNA methyltransferase RlmN;
AltName: Full=23S rRNA
(adenine(2503)-C(2))-methyltransferase; AltName:
Full=23S rRNA m2A2503 methyltransferase; AltName:
Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=tRNA (adenine(37)-C(2))-methyltransferase;
AltName: Full=tRNA m2A37 methyltransferase
gi|78170995|gb|ABB28091.1| 23S rRNA m(2)A-2503 methyltransferase [Chlorobium chlorochromatii
CaD3]
Length = 366
Score = 199 bits (507), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 117/282 (41%), Positives = 162/282 (57%), Gaps = 24/282 (8%)
Query: 79 TTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGT 138
T K+L+KL +G +E V++ P R T C+SSQ GC M C FCATGT
Sbjct: 93 TRKILLKLSDGALIECVLI--------------PAEERMTACLSSQAGCPMQCTFCATGT 138
Query: 139 MGFKSNLSSGEIVEQLVHASRLS-----NIRNVVFMGMGEPLNNYAALVEAVRIMTGLPF 193
MG + NLS+GEI EQL + L+ I NVVFMGMGEPL N ++EA+ M+ +
Sbjct: 139 MGLQRNLSAGEIWEQLYALNGLALQEGKTITNVVFMGMGEPLLNTDNVLEAIATMSSRNY 198
Query: 194 Q--VSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMP-AARAFPLEKL 250
+S ++IT+STVGIV I + LAVSLH+ Q+VR Q+MP AA +PL L
Sbjct: 199 NLSLSQRKITISTVGIVPEIERLSRSGLKTKLAVSLHSARQEVRQQLMPIAAERYPLPLL 258
Query: 251 MNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQF 310
+L+ Y K + + I I Y+ML+GVND ++ AH L + F +NLI +NPI ++ +F
Sbjct: 259 SKSLEAYSKATGEAITIVYMMLNGVNDSKEDAHLLARYCRHFSCKINLIDYNPILTI-RF 317
Query: 311 RTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVV 352
+ + + + FQ L TVRK G ++ ACGQLV
Sbjct: 318 GSVQESQKNEFQAYLMAQ-KFHVTVRKSYGASVNAACGQLVT 358
>gi|390943210|ref|YP_006406971.1| 23S rRNA m(2)A-2503 methyltransferase [Belliella baltica DSM 15883]
gi|390416638|gb|AFL84216.1| 23S rRNA m(2)A-2503 methyltransferase [Belliella baltica DSM 15883]
Length = 354
Score = 199 bits (507), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 116/340 (34%), Positives = 181/340 (53%), Gaps = 24/340 (7%)
Query: 18 FEKAGIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHSVVDSSDD 77
F G K+ +++++ +D+ ++ +L+ F + + ++ S D
Sbjct: 21 FVSKGDKKFRAKQVYEWLWHKSLKNFDDMTNISKETREMLKDNF-AINHIMVDLMQHSSD 79
Query: 78 VTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATG 137
T K VKL + VE+V++ P R T C+SSQVGC + CNFCAT
Sbjct: 80 GTIKNAVKLYDSKIVESVLI--------------PTSKRITACVSSQVGCSLDCNFCATA 125
Query: 138 TMGFKSNLSSGEIVEQLVHASRLSNI------RNVVFMGMGEPLNNYAALVEAV-RIMTG 190
+ NL+ EI +Q+V + I N+VFMGMGEPL NY ++EA+ +I +
Sbjct: 126 RLKRMRNLNPDEIYDQVVAIKDEAEIYFKRPLTNIVFMGMGEPLLNYNNVIEAIDKITSP 185
Query: 191 LPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKL 250
++P+RIT+STVGI I K D NLA+SLH+ + + R ++MP P+E L
Sbjct: 186 EGLGMAPRRITLSTVGIPKMIKKMADDGVRFNLAISLHSAINETRSRLMPINNVNPIEDL 245
Query: 251 MNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQF 310
++LK + + +++K+ EY++ +G+ND+E HA L K + VN+I +NPI +F
Sbjct: 246 ADSLKYWYEKTKRKVTYEYVIWEGINDDEAHARALAKFCKIIPSKVNIIQYNPIDE-GEF 304
Query: 311 RTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 350
R +S + V + +IL I VRK GQDI ACGQL
Sbjct: 305 RQASQEAVEMYVRILENQ-GIIAKVRKSRGQDIDAACGQL 343
>gi|294500981|ref|YP_003564681.1| radical SAM enzyme, Cfr family [Bacillus megaterium QM B1551]
gi|294350918|gb|ADE71247.1| radical SAM enzyme, Cfr family [Bacillus megaterium QM B1551]
Length = 363
Score = 199 bits (507), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 112/325 (34%), Positives = 179/325 (55%), Gaps = 25/325 (7%)
Query: 32 WKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHSVVDSSDDVTTKLLVKLQNGGF 91
W YV ++D+ +L L+ KF LT+ V +S D T K L +L +G
Sbjct: 48 WLYV--KRVTDFDDMSNLSKGLREQLKDKF-ALTTLKTVVQQTSGDGTMKFLFELHDGYT 104
Query: 92 VEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIV 151
+E V+MR++ +++C+++QVGC++GC FCA+ G K NL +GEIV
Sbjct: 105 IETVLMRHEYG--------------NSVCVTTQVGCRIGCTFCASTLGGLKRNLEAGEIV 150
Query: 152 EQLVHASRL-----SNIRNVVFMGMGEPLNNYAALVEAVR-IMTGLPFQVSPKRITVSTV 205
Q+V + + +VV MG+GEP +NY ++ ++ I + + + ITVST
Sbjct: 151 AQVVKVQKALDEQGERVSSVVIMGIGEPFDNYDEMMRFLKTINSDDGLNIGARHITVSTS 210
Query: 206 GIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKI 265
GI+ I KF + +N A+SLHAP D+R ++MP RA+ L LM A+K Y + ++I
Sbjct: 211 GIIPKIYKFADEKMQINFAISLHAPNNDIRSRLMPINRAYKLPDLMEAIKYYTDKTGRRI 270
Query: 266 FIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKIL 325
EY + GVND+ +HA +L L++ + VNLIP N + RT +++ +F++ L
Sbjct: 271 SFEYGLFGGVNDQVEHAEELADLIKDVKCHVNLIPVNYVPERDYVRTPR-EQIFAFERTL 329
Query: 326 RGSYNIRTTVRKQMGQDISGACGQL 350
+ + T+R++ G DI ACGQL
Sbjct: 330 K-KRGVNVTIRREQGHDIDAACGQL 353
>gi|345017808|ref|YP_004820161.1| ribosomal RNA large subunit methyltransferase N [Thermoanaerobacter
wiegelii Rt8.B1]
gi|344033151|gb|AEM78877.1| Ribosomal RNA large subunit methyltransferase N [Thermoanaerobacter
wiegelii Rt8.B1]
Length = 342
Score = 199 bits (507), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 115/339 (33%), Positives = 192/339 (56%), Gaps = 26/339 (7%)
Query: 18 FEKAGIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHSVVD---- 73
F G ++ I+K++ + ++DE + LRSK K + ++
Sbjct: 16 FVNIGESRYRAKQIYKWIYDKKITDFDEMTDISKN----LRSKLKEIAYISQLKIEARRV 71
Query: 74 SSDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNF 133
S D T K L L++ +E V ++Y R G +T C+S+QVGC M C+F
Sbjct: 72 SEVDDTVKYLFLLEDNNIIEGVAIKY-----------RFG---NTACVSTQVGCNMRCSF 117
Query: 134 CATGTMGFKSNLSSGEIVEQLVHAS-RLSNIRNVVFMGMGEPLNNYAALVEAVRIMTG-L 191
CA+ G +L + E+++Q++ I N+V MG GEP +NY +++ ++I+
Sbjct: 118 CASAIGGKVRDLKASEMIDQVIAIDGDYGKISNIVLMGSGEPFDNYDEVMKFIKIVNNPQ 177
Query: 192 PFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLM 251
+ + IT+ST GIV I +F + +NL++SLHAP ++R Q+MP +A+PLE+LM
Sbjct: 178 GLGIGGRHITISTCGIVPKIYQFADEKLQVNLSISLHAPNDELRTQLMPINKAYPLEELM 237
Query: 252 NALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFR 311
A K Y + ++++I EY +++GVND+++HA+QL LL+ VNLIP N + + F+
Sbjct: 238 KACKYYVEKTRRRITFEYSLIEGVNDKKEHAYQLVDLLKGMLCHVNLIPINYVKEIG-FK 296
Query: 312 TSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 350
++++KV F+KI+ + I TVR+++G DI ACGQL
Sbjct: 297 KANNEKVMMFKKIIEDA-GISCTVRRELGSDIEAACGQL 334
>gi|220905656|ref|YP_002480967.1| radical SAM enzyme, Cfr family [Cyanothece sp. PCC 7425]
gi|219862267|gb|ACL42606.1| radical SAM enzyme, Cfr family [Cyanothece sp. PCC 7425]
Length = 367
Score = 199 bits (507), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 113/281 (40%), Positives = 167/281 (59%), Gaps = 19/281 (6%)
Query: 75 SDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFC 134
+ D T K L++L +G +E V + P R T+C+SSQVGC MGC+FC
Sbjct: 96 AQDGTVKYLLRLDDGQIIETVGI--------------PSNRRLTVCVSSQVGCPMGCDFC 141
Query: 135 ATGTMGFKSNLSSGEIVEQL--VHASRLSNIRNVVFMGMGEPLNNYAALVEAVRIMTGLP 192
ATG GF+ +L EIV+Q+ V A + NVVFMGMGEPL N A++EAVR +
Sbjct: 142 ATGKGGFRRHLDRHEIVDQVLTVQADFGQRVSNVVFMGMGEPLLNLEAVLEAVRCLNQ-D 200
Query: 193 FQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMN 252
+ + +T+STVGI I + + LAVSLHA Q +R Q++P+AR +PLE L+
Sbjct: 201 VGIGQRFLTISTVGIPGQIRRLANHHLQATLAVSLHASNQPLRAQLIPSARHYPLENLLQ 260
Query: 253 ALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRT 312
++Y + + +++ EYI+L G+ND QHA +L + L FQ VNLIP+NPI V ++
Sbjct: 261 ECRDYVQLTGRRVSFEYILLGGLNDLPQHALELAQHLRGFQSHVNLIPYNPISEVD-YQR 319
Query: 313 SSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVN 353
S ++ F ++L+ ++I ++R+ G D + ACGQL N
Sbjct: 320 PSPQRMQHFLQLLQ-EHHIAASIRRSRGLDQNAACGQLRAN 359
>gi|31789377|gb|AAP58494.1| conserved hypothetical protein [uncultured Acidobacteria bacterium]
Length = 413
Score = 199 bits (507), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 110/286 (38%), Positives = 172/286 (60%), Gaps = 10/286 (3%)
Query: 73 DSSDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCN 132
+ S D T K L++L +G +E+V + ++ G +G PR R T C+S+QVGC M C
Sbjct: 117 ERSQDGTVKFLLRLADGRHIESVFIPDETPAGP-DGSPRAA--RITFCVSTQVGCAMKCA 173
Query: 133 FCATGTMGFKSNLSSGEIVEQLVHASR----LSNIRNVVFMGMGEPLNNYAALVEAVRIM 188
FC TG MG +L++GEI Q+ +R L N+V MGMGEPL+NY ++A+R++
Sbjct: 174 FCLTGKMGIDRSLTAGEIAGQVRVLARELGFLETRFNIVLMGMGEPLHNYEETMKALRVL 233
Query: 189 TGLP-FQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPL 247
F +S +R+T+STVG++ A+ + ++ NLA+SLHA +D R ++P R + L
Sbjct: 234 ADEHGFAMSARRMTLSTVGVLPALERLATEPLMPNLAISLHATTEDQRDLLVPINRKYGL 293
Query: 248 EKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSV 307
++L++A + + +++I EY++L VND + A +L KLL + VNL+P N +
Sbjct: 294 KELLDACRRFPLKRRERITFEYVLLREVNDTPEDARRLVKLLHGIKGKVNLLPLNEAAGI 353
Query: 308 SQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVN 353
F SDD+V+SF +IL + I +VRK G+DI ACGQL+
Sbjct: 354 P-FERPSDDRVNSFARIL-ADHGIPVSVRKSRGRDIRAACGQLITE 397
>gi|374986203|ref|YP_004961698.1| ribosomal RNA large subunit methyltransferase N [Streptomyces
bingchenggensis BCW-1]
gi|297156855|gb|ADI06567.1| ribosomal RNA large subunit methyltransferase N [Streptomyces
bingchenggensis BCW-1]
Length = 368
Score = 199 bits (507), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 121/324 (37%), Positives = 176/324 (54%), Gaps = 33/324 (10%)
Query: 45 EFPSLPSAAYSLLRSKFKPLTSTLHSVVDSSDDVTTKLLVKLQNGGFVEAVIMRYDSSLG 104
++ +P+AA L + P ++ + DD T K L +L +G VE+V+MRY
Sbjct: 61 QWTDIPAAAREKLAAGLLPDLMSVVRHISCDDDTTRKTLWRLFDGTLVESVLMRYPD--- 117
Query: 105 KYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRL---- 160
R T+CISSQ GC M C FCATG G NLS+ EIV Q+V R
Sbjct: 118 -----------RVTMCISSQAGCGMNCPFCATGQAGLDRNLSTAEIVHQIVDGMRALRDG 166
Query: 161 ------SNIRNVVFMGMGEPLNNYAALVEAVRIMT-----GLPFQVSPKRITVSTVGIVH 209
+ + N+VFMGMGEPL NY +V A+R +T GL +S + ITVSTVG+V
Sbjct: 167 EIPGGPARLSNIVFMGMGEPLANYNRVVGAIRRLTDPEPDGL--GLSQRGITVSTVGLVP 224
Query: 210 AINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEY 269
A+ +F + LAVSLHAP +R ++P + + ++++A EY + S +++ IEY
Sbjct: 225 AMLRFADEGFKCRLAVSLHAPDDGLRDTLVPVNTRWKVREVLDAAWEYAETSGRRVSIEY 284
Query: 270 IMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSY 329
++ +ND+ A LG+LL+ +V VNLIP NP S++ S + +F L ++
Sbjct: 285 ALIRDINDQAWRADLLGRLLKGRRVHVNLIPLNPTPG-SKWTASRPEDEKAFVAALE-AH 342
Query: 330 NIRTTVRKQMGQDISGACGQLVVN 353
+ TVR GQ+I GACGQL
Sbjct: 343 GVPVTVRDTRGQEIDGACGQLAAT 366
>gi|414157055|ref|ZP_11413355.1| ribosomal RNA large subunit methyltransferase N [Streptococcus sp.
F0442]
gi|410868371|gb|EKS16336.1| ribosomal RNA large subunit methyltransferase N [Streptococcus sp.
F0442]
Length = 362
Score = 199 bits (507), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 119/349 (34%), Positives = 192/349 (55%), Gaps = 34/349 (9%)
Query: 19 EKAGIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKF--KPLTSTLHSVVDSSD 76
E+ G K+ IW+++ ++E +L + L +F PL +V S
Sbjct: 18 EENGEKKFRATQIWEWLYRKRVQSFEEMTNLSKDLIAKLNDQFVVNPLK---QRIVQESA 74
Query: 77 DVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCAT 136
D T K L +L +G +E V+MR L ++C+++QVGC +GC FCA+
Sbjct: 75 DGTVKYLFELPDGMLIETVLMRQHYGL--------------SVCVTTQVGCNIGCTFCAS 120
Query: 137 GTMGFKSNLSSGEIVEQLVHASRLSNIR-------NVVFMGMGEPLNNYAALVEAVRIMT 189
G + + +L++GEIV Q++ + + R ++V MG+GEP +NY +++ +R +
Sbjct: 121 GLIKKQRDLNNGEIVSQIMLVQKYFDERGQDERVSHIVVMGIGEPFDNYNNVLKFIRTVN 180
Query: 190 ---GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFP 246
GL + + ITVST G+ H I F ++ +NLAVSLHAP D+R IM RAFP
Sbjct: 181 DDKGLA--IGARHITVSTSGLAHKIRDFANEGVQVNLAVSLHAPNNDLRSSIMKINRAFP 238
Query: 247 LEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVV--VNLIPFNPI 304
+EKL A++ Y + + +++ EYIML+ VND + A +L +LL+ + + VNLIP+NP+
Sbjct: 239 IEKLFAAIEYYIETTNRRVTFEYIMLNEVNDGVEQALELAELLKNIKKLSYVNLIPYNPV 298
Query: 305 GSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVN 353
Q+ S ++V +F L+ + + VR++ G DI ACGQL N
Sbjct: 299 SEHDQYSRSPKERVMAFYDTLK-KHGVNCVVRQEHGTDIDAACGQLRSN 346
>gi|253682293|ref|ZP_04863090.1| radical SAM enzyme, Cfr family [Clostridium botulinum D str. 1873]
gi|253562005|gb|EES91457.1| radical SAM enzyme, Cfr family [Clostridium botulinum D str. 1873]
Length = 343
Score = 199 bits (507), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 109/326 (33%), Positives = 185/326 (56%), Gaps = 19/326 (5%)
Query: 31 IWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHSVVDSSDDVTTKLLVKLQNGG 90
I++++ + + E ++ A+ L++ F + S+ D T K L + ++G
Sbjct: 29 IFEWIYKKSAFSFHEMTNISKASKEKLKNSFYIEIPNIIKKYKSNIDGTEKFLFEYKDGN 88
Query: 91 FVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEI 150
+E+V+MRY +++C+S+Q+GC+MGC FCA+ G NL+SGEI
Sbjct: 89 IIESVVMRYKHG--------------NSICVSTQIGCRMGCKFCASTVEGVVRNLTSGEI 134
Query: 151 VEQLVHASRL--SNIRNVVFMGMGEPLNNYAALVEAVRIMTG-LPFQVSPKRITVSTVGI 207
V Q++ A + I NVV MG GEPL+NY +V+ ++++ ++ + IT+ST GI
Sbjct: 135 VAQILKAQQEIGERISNVVLMGSGEPLDNYDNVVKFIKLINDDNALKIGQRHITLSTCGI 194
Query: 208 VHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFI 267
V I + + + LA+SLHAP ++R +MP A + +++L++A K Y + + ++I
Sbjct: 195 VPKIKELADEKLQITLAISLHAPNDEIRKSMMPVANKYNIKELLDACKYYSRITNRRITF 254
Query: 268 EYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRG 327
EY +++G+ND ++A +L L+ VNLIP N I + ++ S + F+ IL
Sbjct: 255 EYALVNGINDSAKNAEELFNQLKGILCHVNLIPVNEIKE-NDYKRSRAKNIEEFKNILI- 312
Query: 328 SYNIRTTVRKQMGQDISGACGQLVVN 353
Y I TT+R++MG DI+GACGQL N
Sbjct: 313 KYGIETTIRREMGSDINGACGQLRRN 338
>gi|293402260|ref|ZP_06646398.1| radical SAM enzyme, Cfr family [Erysipelotrichaceae bacterium
5_2_54FAA]
gi|291304367|gb|EFE45618.1| radical SAM enzyme, Cfr family [Erysipelotrichaceae bacterium
5_2_54FAA]
Length = 352
Score = 199 bits (506), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 122/335 (36%), Positives = 181/335 (54%), Gaps = 37/335 (11%)
Query: 31 IWKYVIENPNCEWDEFPSLPSAAYSLLRSKF--KPLTSTLHSVVDSSDDVTTKLLVKLQN 88
I++++ DE L +L++ + KPLT V S D TTK L L++
Sbjct: 29 IFQWLYRKRVTSIDEMSDLSKETREILKANYALKPLTLKDKQV---SSDGTTKYLFALED 85
Query: 89 GGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSG 148
G +E+V+M++D GK ++C++SQVGC M C FCA+G K NL+SG
Sbjct: 86 GSLIESVLMQFD--YGK------------SICVTSQVGCNMSCAFCASGLTKKKRNLTSG 131
Query: 149 EIVEQLVHA--------SRLSNIRNVVFMGMGEPLNNYAALVEAVRIMT---GLPFQVSP 197
E+V Q+++ RLS+I V MG GEP +NY ++ + + GL +
Sbjct: 132 EMVAQVMYVQQDLDKQEERLSHI---VVMGTGEPFDNYENVMNFLSTVNHDRGLG--IGA 186
Query: 198 KRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEY 257
+ IT+ST G+V I +F + NLA+SLHAP +R ++MP A+PLE+LM A+++Y
Sbjct: 187 RHITISTCGVVPKIYEFSKEHTQYNLAISLHAPNNTLRDELMPINHAYPLEELMKAIRQY 246
Query: 258 QKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDK 317
+ +++ EYI+L GVND+++H QL KLL VNLIP+N + F+
Sbjct: 247 AAENNRRLTFEYILLRGVNDQKEHVKQLAKLLRGLNAYVNLIPYNAVDEKG-FQGVDHAH 305
Query: 318 VSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVV 352
F L IR T+RK+ G DI ACGQL V
Sbjct: 306 AMVFYDALMKE-GIRCTIRKEHGADIDAACGQLRV 339
>gi|114776700|ref|ZP_01451743.1| radical SAM superfamily protein [Mariprofundus ferrooxydans PV-1]
gi|114552786|gb|EAU55217.1| radical SAM superfamily protein [Mariprofundus ferrooxydans PV-1]
Length = 357
Score = 199 bits (506), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 125/356 (35%), Positives = 190/356 (53%), Gaps = 35/356 (9%)
Query: 16 AEFEKAGIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHSVVDSS 75
A+ +A I +H+ + + + P LP S L ++ L +
Sbjct: 29 ADRLRAAIFRHY----------GSDTDINNTPDLPLRLRSYL-AEHTALLQPASTATSEG 77
Query: 76 DDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCA 135
+D T KLL+ + +G VE V++ PG R T CIS+QVGC +GC FC
Sbjct: 78 EDGTRKLLLAMADGREVETVLI--------------PGNGRLTQCISTQVGCAVGCTFCL 123
Query: 136 TGTMGFKSNLSSGEIVEQLVHASRLS--NIRNVVFMGMGEPLNNYAALVEAVRIMT---G 190
T T G NL++ E+V ++ R+S +RN+V MGMGEPL+NY + VR+ T G
Sbjct: 124 TATAGLTRNLTAAEMVAEVTAGQRISGRQVRNLVLMGMGEPLHNYDEVAHFVRLATDPKG 183
Query: 191 LPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKL 250
+ F SP R+T+ST G+V A+ + D NLAVSL+A VR IMP R +P+ L
Sbjct: 184 MAF--SPNRVTLSTSGLVPAMQRMIRDELPCNLAVSLNATNDAVRDTIMPINRKYPIAML 241
Query: 251 MNALKEYQK-NSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQ 309
++ ++EY + +++ IEY++LDG+ND + A +L +L+ VNL+PFN +
Sbjct: 242 LDTVREYIRVRGNKRVLIEYVLLDGINDSQADAIRLCELMAGMGCTVNLLPFNAYPGLP- 300
Query: 310 FRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDKISAKSTPP 365
F+ +D VS+F+ IL + I T VR+ G+DI+ ACGQL + + A P
Sbjct: 301 FQRPADAAVSAFRAILVEA-GIITVVRESKGRDIAAACGQLKTEVVQRRKASRITP 355
>gi|125973091|ref|YP_001037001.1| ribosomal RNA large subunit methyltransferase N [Clostridium
thermocellum ATCC 27405]
gi|256004594|ref|ZP_05429572.1| radical SAM enzyme, Cfr family [Clostridium thermocellum DSM 2360]
gi|281417286|ref|ZP_06248306.1| radical SAM enzyme, Cfr family [Clostridium thermocellum JW20]
gi|385779008|ref|YP_005688173.1| radical SAM enzyme, Cfr family [Clostridium thermocellum DSM 1313]
gi|419721503|ref|ZP_14248666.1| Ribosomal RNA large subunit methyltransferase N [Clostridium
thermocellum AD2]
gi|419725127|ref|ZP_14252180.1| Ribosomal RNA large subunit methyltransferase N [Clostridium
thermocellum YS]
gi|205829739|sp|A3DCX9.1|RLMN_CLOTH RecName: Full=Probable dual-specificity RNA methyltransferase RlmN;
AltName: Full=23S rRNA
(adenine(2503)-C(2))-methyltransferase; AltName:
Full=23S rRNA m2A2503 methyltransferase; AltName:
Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=tRNA (adenine(37)-C(2))-methyltransferase;
AltName: Full=tRNA m2A37 methyltransferase
gi|125713316|gb|ABN51808.1| radical SAM enzyme, Cfr family [Clostridium thermocellum ATCC
27405]
gi|255991466|gb|EEU01570.1| radical SAM enzyme, Cfr family [Clostridium thermocellum DSM 2360]
gi|281408688|gb|EFB38946.1| radical SAM enzyme, Cfr family [Clostridium thermocellum JW20]
gi|316940688|gb|ADU74722.1| radical SAM enzyme, Cfr family [Clostridium thermocellum DSM 1313]
gi|380771448|gb|EIC05315.1| Ribosomal RNA large subunit methyltransferase N [Clostridium
thermocellum YS]
gi|380782443|gb|EIC12078.1| Ribosomal RNA large subunit methyltransferase N [Clostridium
thermocellum AD2]
Length = 349
Score = 199 bits (506), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 110/286 (38%), Positives = 177/286 (61%), Gaps = 19/286 (6%)
Query: 74 SSDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNF 133
S D T K L KL +G +E+V+M+Y L Y+ CISSQVGCKMGC F
Sbjct: 74 SKIDGTIKYLFKLNDGNIIESVLMQY---LHGYSA-----------CISSQVGCKMGCKF 119
Query: 134 CATGTMGFKSNLSSGEIVEQL--VHASRLSNIRNVVFMGMGEPLNNYAALVEAVRIMTGL 191
CA+ +GF NL+ GE+++Q+ + + I NVV MG+GEPL+NY +V+ +R++
Sbjct: 120 CASTGVGFVRNLTPGEMLDQILTIQNDTKNRIGNVVIMGIGEPLDNYENVVKFLRLVNHK 179
Query: 192 P-FQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKL 250
+ + I+VST G+V I + + + L++SLHAP ++R +IMP + + ++K+
Sbjct: 180 DGINLGARHISVSTCGLVPEILRLAEEKIPVTLSISLHAPNDEIREKIMPINKRYSIDKI 239
Query: 251 MNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQF 310
+ A K Y + + ++I EY M+DG+ND +++A +L K + VNLIP N + S + F
Sbjct: 240 IEACKIYTETTNRRITFEYAMIDGLNDSKENALELAKRIRGMLCHVNLIPVNTV-SDTGF 298
Query: 311 RTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPD 356
+ SS +K+++F++IL + + TTVR+++G DI+ ACGQL NL +
Sbjct: 299 KRSSREKITAFKEILE-RFGVETTVRRELGSDINAACGQLRRNLVE 343
>gi|297544781|ref|YP_003677083.1| Cfr family radical SAM protein [Thermoanaerobacter mathranii subsp.
mathranii str. A3]
gi|296842556|gb|ADH61072.1| radical SAM enzyme, Cfr family [Thermoanaerobacter mathranii subsp.
mathranii str. A3]
Length = 342
Score = 199 bits (506), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 117/340 (34%), Positives = 194/340 (57%), Gaps = 28/340 (8%)
Query: 18 FEKAGIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHSVVD---- 73
F G ++ I+K++ ++D+ + LRSK K + V+
Sbjct: 16 FVNIGESRYRAKQIYKWIYGKKITDFDKMTDISKN----LRSKLKEIAYISQLKVEARRV 71
Query: 74 SSDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNF 133
S D T K L L++ +E V ++Y R G +T C+S+QVGC M C+F
Sbjct: 72 SEIDNTVKYLFLLEDKNIIEGVAIKY-----------RFG---NTACVSTQVGCNMRCSF 117
Query: 134 CATGTMGFKSNLSSGEIVEQLVHA-SRLSNIRNVVFMGMGEPLNNYAALVEAVRIMTGLP 192
CA+ G +L + E+V+Q++ S I N+V MG GEP +NY +++ ++I+ P
Sbjct: 118 CASAIGGKVRDLKASEMVDQVMSIDSDYGKISNIVLMGSGEPFDNYEEVMKFIKIVNN-P 176
Query: 193 FQ--VSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKL 250
+ + + IT+ST GI+ I +F + +NL++SLHAP ++R Q+MP +A+PLE+L
Sbjct: 177 YGLGIGSRHITISTCGIIPKIYQFADEKLQVNLSISLHAPNDELRTQLMPINKAYPLEEL 236
Query: 251 MNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQF 310
M A K Y + ++++I EY +++GVND+++HA+QL LL+ VNLIP N + + F
Sbjct: 237 MKACKYYIEKTRRRITFEYSLIEGVNDKKEHAYQLVDLLQGMLCHVNLIPINYVKEIG-F 295
Query: 311 RTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 350
+ ++++KV F+KI+ + I TVR+++G DI ACGQL
Sbjct: 296 KKAANEKVMMFKKIIENA-GISCTVRRELGSDIEAACGQL 334
>gi|295706329|ref|YP_003599404.1| radical SAM enzyme, Cfr family [Bacillus megaterium DSM 319]
gi|294803988|gb|ADF41054.1| radical SAM enzyme, Cfr family [Bacillus megaterium DSM 319]
Length = 363
Score = 199 bits (506), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 112/325 (34%), Positives = 179/325 (55%), Gaps = 25/325 (7%)
Query: 32 WKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHSVVDSSDDVTTKLLVKLQNGGF 91
W YV ++D+ +L L+ KF LT+ V +S D T K L +L +G
Sbjct: 48 WLYV--KRVTDFDDMSNLSKGLREQLKDKF-ALTTLKTVVQQTSGDGTMKFLFELHDGYT 104
Query: 92 VEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIV 151
+E V+MR++ +++C+++QVGC++GC FCA+ G K NL +GEIV
Sbjct: 105 IETVLMRHEYG--------------NSVCVTTQVGCRIGCTFCASTLGGLKRNLEAGEIV 150
Query: 152 EQLVHASRL-----SNIRNVVFMGMGEPLNNYAALVEAVR-IMTGLPFQVSPKRITVSTV 205
Q+V + + +VV MG+GEP +NY ++ ++ I + + + ITVST
Sbjct: 151 AQVVKVQKALDEQGERVSSVVIMGIGEPFDNYDEMMRFLKTINSDDGLNIGARHITVSTS 210
Query: 206 GIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKI 265
GI+ I KF + +N A+SLHAP D+R ++MP RA+ L LM A+K Y + ++I
Sbjct: 211 GIIPKIYKFADEKMQINFAISLHAPNNDIRSRLMPINRAYKLPDLMEAIKYYTDKTGRRI 270
Query: 266 FIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKIL 325
EY + GVND+ +HA +L L++ + VNLIP N + RT +++ +F++ L
Sbjct: 271 SFEYGLFGGVNDQVEHAEELADLIKDVKCHVNLIPVNYVPERDYVRTPR-EQIFAFERTL 329
Query: 326 RGSYNIRTTVRKQMGQDISGACGQL 350
+ + T+R++ G DI ACGQL
Sbjct: 330 K-KRGVNVTIRREQGHDIDAACGQL 353
>gi|357636480|ref|ZP_09134355.1| 23S rRNA m2A2503 methyltransferase [Streptococcus macacae NCTC
11558]
gi|357584934|gb|EHJ52137.1| 23S rRNA m2A2503 methyltransferase [Streptococcus macacae NCTC
11558]
Length = 361
Score = 199 bits (506), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 119/346 (34%), Positives = 188/346 (54%), Gaps = 34/346 (9%)
Query: 22 GIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKF--KPLTSTLHSVVDSSDDVT 79
G K+ IW ++ + ++E +L +LL F PL +V S D T
Sbjct: 21 GEKKFRAKQIWDWLYKKRVQSFEEMTNLSKDLIALLNDSFLVNPLK---QRIVQESADGT 77
Query: 80 TKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTM 139
K L +L +G +E V+MR L ++C+++QVGC +GC FCA+G +
Sbjct: 78 VKYLFELPDGMLIETVLMRQHYGL--------------SVCVTTQVGCNIGCTFCASGLI 123
Query: 140 GFKSNLSSGEIVEQLV-------HASRLSNIRNVVFMGMGEPLNNYAALVEAVRIMT--- 189
+ +L++GEI Q++ R + +VV MG+GEP +NY +++ +R +
Sbjct: 124 KKQRDLTNGEITAQIMLVQKYFDERGRGERVSHVVVMGIGEPFDNYDNVLKFLRTINDDN 183
Query: 190 GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEK 249
GL + + ITVST G+ H I +F + +NLAVSLHAP ++R IM R+FPLEK
Sbjct: 184 GLA--IGARHITVSTSGLAHKIREFAHEGVQVNLAVSLHAPNNELRSSIMRINRSFPLEK 241
Query: 250 LMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVV--VNLIPFNPIGSV 307
L A++ Y + + +++ EYIML+GVND ++A +L L + + + VNLIP+NP+
Sbjct: 242 LFAAIEYYIETTNRRVTFEYIMLNGVNDNPENAQELADLTKKIRKLSYVNLIPYNPVTEH 301
Query: 308 SQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVN 353
Q+ S ++V F IL+ + + VR++ G DI ACGQL N
Sbjct: 302 DQYSRSPKERVDVFYDILKKN-GVNCVVRQEHGTDIDAACGQLRSN 346
>gi|205829853|sp|Q15R53.2|RLMN_PSEA6 RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
Length = 376
Score = 199 bits (506), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 127/365 (34%), Positives = 194/365 (53%), Gaps = 46/365 (12%)
Query: 18 FEKAGIKQHFIPL---------IWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTL 68
F +AG++++F + + K++ + ++D+ +L A LR K K
Sbjct: 13 FNRAGLREYFSSIGEKPFRADQMMKWIYQAGVSDFDQMTNLNKA----LREKLKAQCEVK 68
Query: 69 HSVV---DSSDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQV 125
+ + D T K ++L+ G VE V + P R+TLC+SSQV
Sbjct: 69 APEIAYQQGASDGTIKFALRLEGGQEVETVWI--------------PDEDRATLCVSSQV 114
Query: 126 GCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASR---LSN------IRNVVFMGMGEPLN 176
GC + C FC+T GF NLS EI+ Q+ + LSN I NVV MGMGEPL
Sbjct: 115 GCALECTFCSTAQQGFNRNLSVSEIIGQVWRVATTIGLSNDSAKRPITNVVMMGMGEPLL 174
Query: 177 NYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVR 235
N +V A+ +M L F +S +R+T+ST G+V A++ D + LA+SLHAP +R
Sbjct: 175 NLKNVVPAMDLMLDDLAFGLSKRRVTLSTSGVVPALDML-GDQIDVALAISLHAPDDKLR 233
Query: 236 CQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDEEQHAHQLGKLLETF 292
+I+P + +P+++ + ++ Y S Q K+ +EY+ML+G+ND AH+L K+L
Sbjct: 234 DEIVPINKKYPIQEFLAGVRRYLAKSNANQGKVTVEYVMLNGINDSTDQAHELAKVLADT 293
Query: 293 QVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVV 352
+NLIPFNP S + SS+ ++ F K+L SY + VRK G DI ACGQLV
Sbjct: 294 PCKINLIPFNPYPG-SPYSRSSNSRIDRFAKVL-SSYGLMVVVRKTRGDDIDAACGQLVG 351
Query: 353 NLPDK 357
++ D+
Sbjct: 352 DVVDR 356
>gi|330996801|ref|ZP_08320673.1| 23S rRNA m2A2503 methyltransferase [Paraprevotella xylaniphila YIT
11841]
gi|329572523|gb|EGG54174.1| 23S rRNA m2A2503 methyltransferase [Paraprevotella xylaniphila YIT
11841]
Length = 348
Score = 199 bits (506), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 112/290 (38%), Positives = 162/290 (55%), Gaps = 18/290 (6%)
Query: 75 SDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFC 134
S D T K L + GG+VE V + P G R+TLC+SSQVGC+M C FC
Sbjct: 75 SADGTVKYLYRTAAGGYVETVYI--------------PDGDRATLCVSSQVGCRMNCRFC 120
Query: 135 ATGTMGFKSNLSSGEIVEQLVHASRLSNIRNVVFMGMGEPLNNYAALVEAVRIMTG-LPF 193
TG GF L++ +I+ QL + NVVFMG GEPL+N ++ A I+T +
Sbjct: 121 MTGKQGFSGQLTAADILNQLYSLPERDTLTNVVFMGQGEPLDNLDNVLRATEILTADYGY 180
Query: 194 QVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNA 253
SPKRITVSTVG+ + +F D +LAVSLH P D R ++MPA ++ L++++
Sbjct: 181 AWSPKRITVSTVGLRKGLKRF-LDESECHLAVSLHNPFADQRARLMPAENSYGLQEIVAL 239
Query: 254 LKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTS 313
L+EY Q+++ EY M +GVND HA +L +LL + +NLI F+P+ V + +
Sbjct: 240 LREYDFTHQRRLSFEYTMFEGVNDTLAHAKELLRLLGGVECRMNLIRFHPVPGVD-LKGT 298
Query: 314 SDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDKISAKST 363
S++ + F+ L G + + +T+R GQDI ACG L + K T
Sbjct: 299 SEEGMLRFRDYLTG-HGLFSTIRASRGQDIFAACGLLSTAKQQGVELKKT 347
>gi|332527850|ref|ZP_08403887.1| hypothetical protein RBXJA2T_17901 [Rubrivivax benzoatilyticus JA2]
gi|332112427|gb|EGJ12220.1| hypothetical protein RBXJA2T_17901 [Rubrivivax benzoatilyticus JA2]
Length = 372
Score = 199 bits (506), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 126/294 (42%), Positives = 168/294 (57%), Gaps = 28/294 (9%)
Query: 75 SDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFC 134
S D TTK L + G VE V + P R TLC+SSQ GC +GC FC
Sbjct: 73 SADGTTKWLFDVGGGNAVETVYI--------------PEDDRGTLCVSSQAGCAVGCRFC 118
Query: 135 ATGTMGFKSNLSSGEIVEQLVHAS-RLSN------IRNVVFMGMGEPLNNYAALVEAVRI 187
+TG GF NLS+GEI+ QL +A RL I NVV MGMGEPL NYAA+V A+R+
Sbjct: 119 STGHQGFSRNLSTGEIIAQLRYAEHRLRGPDGQRVIDNVVMMGMGEPLQNYAAVVPALRV 178
Query: 188 M-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFP 246
M + +S +R+TVST G+V I++ D P + LAVSLHAP +R ++P R
Sbjct: 179 MLDDHGYGLSRRRVTVSTSGMVAMIDRLREDCP-VALAVSLHAPDDALRDMLVPINRKDG 237
Query: 247 LEKLMNALKEYQKNSQQK-IFIEYIMLDGVNDEEQHAHQLGKLLETFQV--VVNLIPFNP 303
+E L++A Y + + + I EY MLDGVND + A QL L+ +V NLIPFNP
Sbjct: 238 IEALLDACLRYVEAAPRDFITFEYCMLDGVNDAPEQAQQLVHLVRRRRVPCKFNLIPFNP 297
Query: 304 IGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDK 357
S + S ++V++F K+L+ + I TT+RK G DI ACGQL + D+
Sbjct: 298 FPE-SGLKRSPRERVTAFAKVLQDA-GIVTTIRKVRGDDIDAACGQLAGEVQDR 349
>gi|384045166|ref|YP_005493183.1| Ribosomal RNA large subunit methyltransferase N 2 [Bacillus
megaterium WSH-002]
gi|345442857|gb|AEN87874.1| Ribosomal RNA large subunit methyltransferase N 2 [Bacillus
megaterium WSH-002]
Length = 363
Score = 199 bits (506), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 112/325 (34%), Positives = 179/325 (55%), Gaps = 25/325 (7%)
Query: 32 WKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHSVVDSSDDVTTKLLVKLQNGGF 91
W YV ++D+ +L L+ KF LT+ V +S D T K L +L +G
Sbjct: 48 WLYV--KRVTDFDDMSNLSKGLREQLKDKF-ALTTLKTVVQQTSGDGTMKFLFELHDGYT 104
Query: 92 VEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIV 151
+E V+MR++ +++C+++QVGC++GC FCA+ G K NL +GEIV
Sbjct: 105 IETVLMRHEYG--------------NSVCVTTQVGCRIGCTFCASTLGGLKRNLEAGEIV 150
Query: 152 EQLVHASRL-----SNIRNVVFMGMGEPLNNYAALVEAVR-IMTGLPFQVSPKRITVSTV 205
Q+V + + +VV MG+GEP +NY ++ ++ I + + + ITVST
Sbjct: 151 AQVVKVQKALDEQGERVSSVVIMGIGEPFDNYDEMMRFLKTINSDDGLNIGARHITVSTS 210
Query: 206 GIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKI 265
GI+ I KF + +N A+SLHAP D+R ++MP RA+ L LM A+K Y + ++I
Sbjct: 211 GIIPKIYKFADEKMQINFAISLHAPNNDIRSRLMPINRAYKLPDLMEAIKYYTDKTGRRI 270
Query: 266 FIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKIL 325
EY + GVND+ +HA +L L++ + VNLIP N + RT +++ +F++ L
Sbjct: 271 SFEYGLFGGVNDQVEHAEELADLIKDVKCHVNLIPVNYVPERDYVRTPR-EQIFAFERTL 329
Query: 326 RGSYNIRTTVRKQMGQDISGACGQL 350
+ + T+R++ G DI ACGQL
Sbjct: 330 K-KRGVNVTIRREQGHDIDAACGQL 353
>gi|85859749|ref|YP_461951.1| radical SAM protein [Syntrophus aciditrophicus SB]
gi|123752486|sp|Q2LUM5.1|RLMN_SYNAS RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|85722840|gb|ABC77783.1| radical SAM family enzyme [Syntrophus aciditrophicus SB]
Length = 348
Score = 199 bits (506), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 122/327 (37%), Positives = 179/327 (54%), Gaps = 27/327 (8%)
Query: 31 IWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHSVVDSSDDVTTKLLVKLQNGG 90
I K++ +DE +L A L ++ +T + V S D T K+L +LQ+
Sbjct: 33 IMKWLYSQGAKSFDEMTTLSRAVRDQL-NEMACITLPEIARVQQSSDGTRKILFRLQDNS 91
Query: 91 FVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEI 150
F+E+V++ PG T CIS+QVGC MGC FC T GF+ NL EI
Sbjct: 92 FIESVLI--------------PGKHNWTACISTQVGCHMGCRFCFTARQGFRRNLKPSEI 137
Query: 151 VEQLV----HASRLSNIRNVVFMGMGEPLNNYAALVEAVRIMT---GLPFQVSPKRITVS 203
QL + I+N+V MGMGEPL NY ++A+RI+T GL F S ++IT+S
Sbjct: 138 TGQLTMLQFYLPEGPEIKNIVMMGMGEPLANYRNTLKAIRIITSDYGLGF--STRKITLS 195
Query: 204 TVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQ 263
T GI I + DL +NLA+SL+AP +R ++MP R +PL++L+ A + Y ++
Sbjct: 196 TSGITPMIEQLGRDL-CINLAISLNAPTDSIRSELMPVNRKYPLDRLLQACRNYPMPGRR 254
Query: 264 KIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQK 323
+ EYI++DGVN HA L +LL+ + +NLI FN F+T S++ V +FQ+
Sbjct: 255 MLTFEYILIDGVNSSPAHAEMLCRLLKGIRCKLNLIRFNEFPDCP-FKTPSEETVLAFQQ 313
Query: 324 ILRGSYNIRTTVRKQMGQDISGACGQL 350
IL ++ +R G+DI ACGQL
Sbjct: 314 IL-VKHHYTAIIRASRGRDILAACGQL 339
>gi|433461978|ref|ZP_20419574.1| 23S rRNA (adenine-C2)-methyltransferase RlmN [Halobacillus sp.
BAB-2008]
gi|432189422|gb|ELK46529.1| 23S rRNA (adenine-C2)-methyltransferase RlmN [Halobacillus sp.
BAB-2008]
Length = 361
Score = 199 bits (506), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 118/348 (33%), Positives = 190/348 (54%), Gaps = 32/348 (9%)
Query: 31 IWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHSVVDSSDDVTTKLLVKLQNGG 90
+W ++ + E+ + ++ + LL F T T ++ S D T K L KL +G
Sbjct: 30 VWDWLYQKRVTEFSQMKNVNQSLIDLLDEHFTIETLT-EEIMQESKDGTVKFLFKLADGN 88
Query: 91 FVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEI 150
+E V+MR++ L ++C+++QVGC +GC+FCA+G + +LSSGEI
Sbjct: 89 VIETVLMRFNYGL--------------SVCVTTQVGCNIGCSFCASGILSKNRDLSSGEI 134
Query: 151 VEQLVHASRL-------SNIRNVVFMGMGEPLNNYAALVEAVRIMTGLP-FQVSPKRITV 202
VEQ++ + + ++V MG+GEP +NY L++ ++++ + + ITV
Sbjct: 135 VEQIMQVQQYLDKKGKDERVSHIVVMGIGEPFDNYDNLIDFLKVVNDKKGLCIGARHITV 194
Query: 203 STVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQ 262
ST GI I F + +NLA+S+HAP ++R +IM +A+PLEKLM A+ Y + +
Sbjct: 195 STSGIAPKIYDFADEGIQINLALSIHAPNNELRTKIMKINKAYPLEKLMPAIDYYLEKTN 254
Query: 263 QKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVV--VNLIPFNPIGSVSQFRTSSDDKVSS 320
++I EYI+L VND ++ A QL LL + + VNLIP+NP+ R+ D ++
Sbjct: 255 RRITFEYILLKDVNDHKKEAEQLAALLRDKRHLSYVNLIPYNPVADHPYDRSEKDAILTF 314
Query: 321 FQKIL-RGSYNIRTTVRKQMGQDISGACGQLVVNLPDKISA---KSTP 364
+Q ++ RG I VR + G DI ACGQL +K A K+TP
Sbjct: 315 YQTLMDRG---INCGVRTEHGTDIDAACGQLRSKQIEKEKARKKKNTP 359
>gi|70726698|ref|YP_253612.1| ribosomal RNA large subunit methyltransferase N [Staphylococcus
haemolyticus JCSC1435]
gi|123776132|sp|Q4L5R9.1|RLMN_STAHJ RecName: Full=Probable dual-specificity RNA methyltransferase RlmN;
AltName: Full=23S rRNA
(adenine(2503)-C(2))-methyltransferase; AltName:
Full=23S rRNA m2A2503 methyltransferase; AltName:
Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=tRNA (adenine(37)-C(2))-methyltransferase;
AltName: Full=tRNA m2A37 methyltransferase
gi|68447422|dbj|BAE05006.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435]
Length = 364
Score = 199 bits (506), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 109/313 (34%), Positives = 173/313 (55%), Gaps = 23/313 (7%)
Query: 44 DEFPSLPSAAYSLLRSKFKPLTSTLHSVVDSSDDVTTKLLVKLQNGGFVEAVIMRYDSSL 103
D+ +L +L+ F +T+ V S D T K L +LQ+G +E V+MR+D
Sbjct: 59 DDMTNLSKDLRQVLKDNF-AMTTLTTVVKQESKDGTIKFLFELQDGYTIETVLMRHDYG- 116
Query: 104 GKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRL--- 160
+++C+++QVGC++GC FCA+ G K NL +GEIV Q++ +
Sbjct: 117 -------------NSVCVTTQVGCRIGCTFCASTLGGLKRNLEAGEIVSQVLTVQKALDA 163
Query: 161 --SNIRNVVFMGMGEPLNNYAALVEAVRIMTGL-PFQVSPKRITVSTVGIVHAINKFHSD 217
+ +V MG+GEP NY +++ +RI+ + + ITVST GI+ I F +
Sbjct: 164 TDERVSQIVIMGIGEPFENYDEMMDFLRIVNDDNSLNIGARHITVSTSGIIPRIYDFAEE 223
Query: 218 LPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVND 277
+N AVSLHA ++R ++MP RA+ ++KLM A+K YQ+ + +++ EY + GVND
Sbjct: 224 DIQINFAVSLHAAKDEIRSKLMPINRAYHVDKLMEAIKYYQEKTNRRVTFEYGLFGGVND 283
Query: 278 EEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRK 337
+ +HA L L++ VNLIP N + + +T DD + F+K L+ I T+R+
Sbjct: 284 QLEHARDLAHLIKDLNCHVNLIPVNHVPERNYVKTPKDD-IFKFEKELK-RLGINATIRR 341
Query: 338 QMGQDISGACGQL 350
+ G DI ACGQL
Sbjct: 342 EQGSDIDAACGQL 354
>gi|254449223|ref|ZP_05062672.1| radical SAM enzyme, Cfr family [gamma proteobacterium HTCC5015]
gi|198261200|gb|EDY85496.1| radical SAM enzyme, Cfr family [gamma proteobacterium HTCC5015]
Length = 380
Score = 199 bits (506), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 125/354 (35%), Positives = 192/354 (54%), Gaps = 18/354 (5%)
Query: 14 IRAEFEKAGIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHSVVD 73
++A F G K + K++ ++DE L + +L+ + + +
Sbjct: 17 LKAFFSDRGEKAFRATQVTKWIHHRCVDDFDEMTDLSKSLREMLKRDAEVRAPEV-VLEQ 75
Query: 74 SSDDVTTKLLVKLQNGGFVEAVIMRYDSSLG-KYNGKPRPGGPRSTLCISSQVGCKMGCN 132
S D T K ++ L N +A R ++G K P R TLC+SSQVGC + C+
Sbjct: 76 KSADGTRKWVLDLDN----QATASRTTPAIGNKVEMVFIPEDGRGTLCVSSQVGCSLDCS 131
Query: 133 FCATGTMGFKSNLSSGEIVEQLVHASRL-------SNIRNVVFMGMGEPLNNYAALVEAV 185
FC+T GF NLS EI+ Q+ A R + NVV MGMGEPL NY +++AV
Sbjct: 132 FCSTARQGFSRNLSVAEIIGQVWQAKRTLLELGEDERLTNVVMMGMGEPLMNYRPVIQAV 191
Query: 186 R-IMTGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARA 244
+M + + +S +++T+ST G+V A+ + D LAVSLHAP +R +++P +
Sbjct: 192 NTMMDDMGYGLSKRKVTISTSGMVPAMERMIEDTQ-CALAVSLHAPNDSLRDELVPINKK 250
Query: 245 FPLEKLMNALKEY-QKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNP 303
PL +LM + + ++ + EY+ML+GVND + AH+LGKLL+ + VNLIPFNP
Sbjct: 251 HPLNELMGVCDRWVEAGPKRNVTYEYVMLEGVNDNREQAHELGKLLKAREAKVNLIPFNP 310
Query: 304 IGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDK 357
+ S ++ SS+ ++ F++IL SY + T RK G DI ACGQLV + D+
Sbjct: 311 FPN-SGYKRSSEARIKEFKRIL-NSYGVFTFPRKTRGDDIDAACGQLVGKVQDR 362
>gi|414160519|ref|ZP_11416785.1| ribosomal RNA large subunit methyltransferase N [Staphylococcus
simulans ACS-120-V-Sch1]
gi|410878039|gb|EKS25928.1| ribosomal RNA large subunit methyltransferase N [Staphylococcus
simulans ACS-120-V-Sch1]
Length = 364
Score = 199 bits (506), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 113/328 (34%), Positives = 184/328 (56%), Gaps = 27/328 (8%)
Query: 31 IWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHSVVDSSDDVTTKLLVKLQNGG 90
I++++ E DE +L +LL+ F +T+ +V S D T K L +LQ+G
Sbjct: 46 IFEWLYEKRVDTIDEMTNLSKDLRALLKDNF-TITTLETAVKQESRDGTIKFLFELQDGY 104
Query: 91 FVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEI 150
+E V+MR++ +++C+++QVGC++GC FCA+ G K NL +GEI
Sbjct: 105 TIETVLMRHEYG--------------NSVCVTTQVGCRIGCTFCASTLGGLKRNLEAGEI 150
Query: 151 VEQLVHASRL-----SNIRNVVFMGMGEPLNNYAALVEAVRIMT---GLPFQVSPKRITV 202
V Q++ + + ++V MG+GEP NY +++ ++I+ GL + + ITV
Sbjct: 151 VAQVLTVQKALDATDERVSSIVIMGIGEPFENYDEMMDFLKIVNHDNGL--NIGARHITV 208
Query: 203 STVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQ 262
ST GI+ I F + +N AVSLHA ++R ++MP RA+ ++KLM A++ YQ+ +
Sbjct: 209 STSGIIPKIYDFADEEIQINFAVSLHAANDEIRSKLMPINRAYSIDKLMEAIQYYQEKTN 268
Query: 263 QKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQ 322
++I EY + GVND+ HA +L L++ VNLIP N + + +TS +D + F+
Sbjct: 269 RRITFEYGLFGGVNDQLTHARELAHLIQGLNCHVNLIPVNHVPERNYVKTSKED-IFKFE 327
Query: 323 KILRGSYNIRTTVRKQMGQDISGACGQL 350
K L+ I T+R+ G DI ACGQL
Sbjct: 328 KELK-RLGINATIRRNQGSDIDAACGQL 354
>gi|109899434|ref|YP_662689.1| ribosomal RNA large subunit methyltransferase N [Pseudoalteromonas
atlantica T6c]
gi|109701715|gb|ABG41635.1| 23S rRNA m(2)A-2503 methyltransferase [Pseudoalteromonas atlantica
T6c]
Length = 380
Score = 199 bits (506), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 127/365 (34%), Positives = 194/365 (53%), Gaps = 46/365 (12%)
Query: 18 FEKAGIKQHFIPL---------IWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTL 68
F +AG++++F + + K++ + ++D+ +L A LR K K
Sbjct: 17 FNRAGLREYFSSIGEKPFRADQMMKWIYQAGVSDFDQMTNLNKA----LREKLKAQCEVK 72
Query: 69 HSVV---DSSDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQV 125
+ + D T K ++L+ G VE V + P R+TLC+SSQV
Sbjct: 73 APEIAYQQGASDGTIKFALRLEGGQEVETVWI--------------PDEDRATLCVSSQV 118
Query: 126 GCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASR---LSN------IRNVVFMGMGEPLN 176
GC + C FC+T GF NLS EI+ Q+ + LSN I NVV MGMGEPL
Sbjct: 119 GCALECTFCSTAQQGFNRNLSVSEIIGQVWRVATTIGLSNDSAKRPITNVVMMGMGEPLL 178
Query: 177 NYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVR 235
N +V A+ +M L F +S +R+T+ST G+V A++ D + LA+SLHAP +R
Sbjct: 179 NLKNVVPAMDLMLDDLAFGLSKRRVTLSTSGVVPALDML-GDQIDVALAISLHAPDDKLR 237
Query: 236 CQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDEEQHAHQLGKLLETF 292
+I+P + +P+++ + ++ Y S Q K+ +EY+ML+G+ND AH+L K+L
Sbjct: 238 DEIVPINKKYPIQEFLAGVRRYLAKSNANQGKVTVEYVMLNGINDSTDQAHELAKVLADT 297
Query: 293 QVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVV 352
+NLIPFNP S + SS+ ++ F K+L SY + VRK G DI ACGQLV
Sbjct: 298 PCKINLIPFNPYPG-SPYSRSSNSRIDRFAKVL-SSYGLMVVVRKTRGDDIDAACGQLVG 355
Query: 353 NLPDK 357
++ D+
Sbjct: 356 DVVDR 360
>gi|388456385|ref|ZP_10138680.1| Fe-S containing enzyme [Fluoribacter dumoffii Tex-KL]
Length = 375
Score = 199 bits (506), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 118/299 (39%), Positives = 169/299 (56%), Gaps = 34/299 (11%)
Query: 75 SDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFC 134
S D T K L+KL G +E V + P R TLC+SSQVGC + C+FC
Sbjct: 76 SSDGTHKWLLKLDCGNCIETVFI--------------PEATRGTLCVSSQVGCALNCSFC 121
Query: 135 ATGTMGFKSNLSSGEIVEQL------------VHASRLSNIRNVVFMGMGEPLNNYAALV 182
+T GF NLS+ EI+ Q+ VH R++ NVV MGMGEPL N+ +V
Sbjct: 122 STAKQGFNRNLSTAEIIGQVWLAVRELSLEEGVHDKRVT---NVVMMGMGEPLLNFDNVV 178
Query: 183 EAVRIMT-GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPA 241
A+ IM + +S +R+T+ST G++ + + P + LAVSLHAP ++R +++P
Sbjct: 179 SAMSIMMDDFAYGLSKRRVTLSTSGVLPELQRLREVSP-VALAVSLHAPNDELRNELVPI 237
Query: 242 ARAFPLEKLMNALKEYQKNS-QQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIP 300
+ +PL +LM K Y KN ++K+ EY+ML GVND+ +HA+QL KLL VNLIP
Sbjct: 238 NKKYPLSQLMALCKTYFKNEPRRKVTFEYVMLKGVNDQPEHANQLIKLLRNIPAKVNLIP 297
Query: 301 FNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDKIS 359
FNP ++ + SS + + +F+ L ++ I T RK G DI ACGQL + D+ S
Sbjct: 298 FNPF-PMTHYERSSQEAIDAFRDKL-IAHGINTITRKTRGDDIDAACGQLAGEVMDRTS 354
>gi|16799559|ref|NP_469827.1| ribosomal RNA large subunit methyltransferase N [Listeria innocua
Clip11262]
gi|46906726|ref|YP_013115.1| ribosomal RNA large subunit methyltransferase N [Listeria
monocytogenes serotype 4b str. F2365]
gi|47092541|ref|ZP_00230330.1| conserved hypothetical protein TIGR00048 [Listeria monocytogenes
str. 4b H7858]
gi|217965434|ref|YP_002351112.1| ribosomal RNA large subunit methyltransferase N [Listeria
monocytogenes HCC23]
gi|226223105|ref|YP_002757212.1| conserved hypothetical protein, highly similar to B. subtilis YloN
protein [Listeria monocytogenes serotype 4b str. CLIP
80459]
gi|254824244|ref|ZP_05229245.1| 23S rRNA methyltransferase [Listeria monocytogenes FSL J1-194]
gi|254829423|ref|ZP_05234110.1| 23S rRNA methyltransferase [Listeria monocytogenes FSL N3-165]
gi|254853849|ref|ZP_05243197.1| 23S rRNA methyltransferase [Listeria monocytogenes FSL R2-503]
gi|254933233|ref|ZP_05266592.1| 23S rRNA methyltransferase [Listeria monocytogenes HPB2262]
gi|254993511|ref|ZP_05275701.1| hypothetical protein LmonocytoFSL_11352 [Listeria monocytogenes FSL
J2-064]
gi|255521363|ref|ZP_05388600.1| hypothetical protein LmonocFSL_09075 [Listeria monocytogenes FSL
J1-175]
gi|284800757|ref|YP_003412622.1| hypothetical protein LM5578_0505 [Listeria monocytogenes 08-5578]
gi|284993943|ref|YP_003415711.1| hypothetical protein LM5923_0504 [Listeria monocytogenes 08-5923]
gi|386007200|ref|YP_005925478.1| hypothetical protein lmo4a_0487 [Listeria monocytogenes L99]
gi|386025790|ref|YP_005946566.1| putative 23S rRNA m2A2503 methyltransferase [Listeria monocytogenes
M7]
gi|386042809|ref|YP_005961614.1| cfr family radical SAM enzyme [Listeria monocytogenes 10403S]
gi|386731248|ref|YP_006204744.1| ribosomal RNA large subunit methyltransferase N [Listeria
monocytogenes 07PF0776]
gi|404280032|ref|YP_006680930.1| hypothetical protein LMOSLCC2755_0480 [Listeria monocytogenes
SLCC2755]
gi|404285843|ref|YP_006692429.1| hypothetical protein LMOSLCC2482_0476 [Listeria monocytogenes
serotype 7 str. SLCC2482]
gi|404409714|ref|YP_006695302.1| hypothetical protein LMOSLCC5850_0475 [Listeria monocytogenes
SLCC5850]
gi|404412560|ref|YP_006698147.1| hypothetical protein LMOSLCC7179_0454 [Listeria monocytogenes
SLCC7179]
gi|405748844|ref|YP_006672310.1| hypothetical protein LMOATCC19117_0509 [Listeria monocytogenes ATCC
19117]
gi|405751708|ref|YP_006675173.1| hypothetical protein LMOSLCC2378_0504 [Listeria monocytogenes
SLCC2378]
gi|406703259|ref|YP_006753613.1| hypothetical protein LMOL312_0484 [Listeria monocytogenes L312]
gi|417314527|ref|ZP_12101224.1| ribosomal RNA large subunit methyltransferase N [Listeria
monocytogenes J1816]
gi|423099572|ref|ZP_17087279.1| 23S rRNA m2A2503 methyltransferase [Listeria innocua ATCC 33091]
gi|424713367|ref|YP_007014082.1| Ribosomal RNA large subunit methyltransferase N [Listeria
monocytogenes serotype 4b str. LL195]
gi|424822222|ref|ZP_18247235.1| Ribosomal RNA large subunit methyltransferase N [Listeria
monocytogenes str. Scott A]
gi|81403675|sp|Q723G9.1|RLMN_LISMF RecName: Full=Probable dual-specificity RNA methyltransferase RlmN;
AltName: Full=23S rRNA
(adenine(2503)-C(2))-methyltransferase; AltName:
Full=23S rRNA m2A2503 methyltransferase; AltName:
Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=tRNA (adenine(37)-C(2))-methyltransferase;
AltName: Full=tRNA m2A37 methyltransferase
gi|81595444|sp|Q92EH6.1|RLMN_LISIN RecName: Full=Probable dual-specificity RNA methyltransferase RlmN;
AltName: Full=23S rRNA
(adenine(2503)-C(2))-methyltransferase; AltName:
Full=23S rRNA m2A2503 methyltransferase; AltName:
Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=tRNA (adenine(37)-C(2))-methyltransferase;
AltName: Full=tRNA m2A37 methyltransferase
gi|254807187|sp|B8DCJ5.1|RLMN_LISMH RecName: Full=Probable dual-specificity RNA methyltransferase RlmN;
AltName: Full=23S rRNA
(adenine(2503)-C(2))-methyltransferase; AltName:
Full=23S rRNA m2A2503 methyltransferase; AltName:
Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=tRNA (adenine(37)-C(2))-methyltransferase;
AltName: Full=tRNA m2A37 methyltransferase
gi|259491990|sp|C1KZZ3.1|RLMN_LISMC RecName: Full=Probable dual-specificity RNA methyltransferase RlmN;
AltName: Full=23S rRNA
(adenine(2503)-C(2))-methyltransferase; AltName:
Full=23S rRNA m2A2503 methyltransferase; AltName:
Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=tRNA (adenine(37)-C(2))-methyltransferase;
AltName: Full=tRNA m2A37 methyltransferase
gi|16412924|emb|CAC95716.1| lin0484 [Listeria innocua Clip11262]
gi|46879991|gb|AAT03292.1| conserved hypothetical protein TIGR00048 [Listeria monocytogenes
serotype 4b str. F2365]
gi|47019133|gb|EAL09877.1| conserved hypothetical protein TIGR00048 [Listeria monocytogenes
str. 4b H7858]
gi|217334704|gb|ACK40498.1| radical SAM enzyme, Cfr family [Listeria monocytogenes HCC23]
gi|225875567|emb|CAS04270.1| Putative conserved hypothetical protein, highly similar to B.
subtilis YloN protein [Listeria monocytogenes serotype
4b str. CLIP 80459]
gi|258601839|gb|EEW15164.1| 23S rRNA methyltransferase [Listeria monocytogenes FSL N3-165]
gi|258607233|gb|EEW19841.1| 23S rRNA methyltransferase [Listeria monocytogenes FSL R2-503]
gi|284056319|gb|ADB67260.1| hypothetical protein LM5578_0505 [Listeria monocytogenes 08-5578]
gi|284059410|gb|ADB70349.1| hypothetical protein LM5923_0504 [Listeria monocytogenes 08-5923]
gi|293584792|gb|EFF96824.1| 23S rRNA methyltransferase [Listeria monocytogenes HPB2262]
gi|293593478|gb|EFG01239.1| 23S rRNA methyltransferase [Listeria monocytogenes FSL J1-194]
gi|307570010|emb|CAR83189.1| conserved hypothetical protein [Listeria monocytogenes L99]
gi|328467548|gb|EGF38610.1| ribosomal RNA large subunit methyltransferase N [Listeria
monocytogenes J1816]
gi|332310902|gb|EGJ23997.1| Ribosomal RNA large subunit methyltransferase N [Listeria
monocytogenes str. Scott A]
gi|336022371|gb|AEH91508.1| putative 23S rRNA m2A2503 methyltransferase [Listeria monocytogenes
M7]
gi|345536043|gb|AEO05483.1| cfr family radical SAM enzyme [Listeria monocytogenes 10403S]
gi|370793928|gb|EHN61731.1| 23S rRNA m2A2503 methyltransferase [Listeria innocua ATCC 33091]
gi|384390006|gb|AFH79076.1| ribosomal RNA large subunit methyltransferase N [Listeria
monocytogenes 07PF0776]
gi|404218044|emb|CBY69408.1| hypothetical protein LMOATCC19117_0509 [Listeria monocytogenes ATCC
19117]
gi|404220908|emb|CBY72271.1| hypothetical protein LMOSLCC2378_0504 [Listeria monocytogenes
SLCC2378]
gi|404226667|emb|CBY48072.1| hypothetical protein LMOSLCC2755_0480 [Listeria monocytogenes
SLCC2755]
gi|404229540|emb|CBY50944.1| hypothetical protein LMOSLCC5850_0475 [Listeria monocytogenes
SLCC5850]
gi|404238259|emb|CBY59660.1| hypothetical protein LMOSLCC7179_0454 [Listeria monocytogenes
SLCC7179]
gi|404244772|emb|CBY02997.1| hypothetical protein LMOSLCC2482_0476 [Listeria monocytogenes
serotype 7 str. SLCC2482]
gi|406360289|emb|CBY66562.1| hypothetical protein LMOL312_0484 [Listeria monocytogenes L312]
gi|424012551|emb|CCO63091.1| Ribosomal RNA large subunit methyltransferase N [Listeria
monocytogenes serotype 4b str. LL195]
Length = 367
Score = 199 bits (506), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 116/345 (33%), Positives = 186/345 (53%), Gaps = 30/345 (8%)
Query: 18 FEKAGIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHSVVDSSDD 77
E G K+ +W ++ ++E ++P LL + F + + VV S D
Sbjct: 18 LEAHGQKKFRATQVWDWLYRKRVKTFEEMSNVPKETIELLTANF-VMNTLEEQVVQESTD 76
Query: 78 VTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATG 137
TTK L KL +G +E V+M+ + L ++C+++QVGC +GC FCA+G
Sbjct: 77 GTTKYLFKLSDGNLIETVMMKQEYGL--------------SVCVTTQVGCNIGCTFCASG 122
Query: 138 TMGFKSNLSSGEIVEQLVHASRLSNIRN-------VVFMGMGEPLNNYAALVEAVRIMT- 189
+ +L++GEIVEQ+++ + RN VV MG+GEP +NY +++ +R++
Sbjct: 123 LLKKSRDLTAGEIVEQIMNVQHYLDGRNLEERVSHVVVMGIGEPFDNYDNVMDFLRVINH 182
Query: 190 --GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPL 247
GL + + ITVST G+ I F ++ +NLA+SLHAP ++R IM + + +
Sbjct: 183 DKGLA--IGARHITVSTSGLAPRIIDFANEDFQVNLAISLHAPNNELRTSIMRINKTYSI 240
Query: 248 EKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQ--VVVNLIPFNPIG 305
EKLM A+ Y + ++I EYIML GVND ++ A +L LL + VNLIP+NP+
Sbjct: 241 EKLMEAIHYYVNKTNRRITFEYIMLKGVNDHKKEALELAALLGEHRHLAYVNLIPYNPVD 300
Query: 306 SVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 350
+ S+ + V +F L+ + I +R++ G DI ACGQL
Sbjct: 301 EHIDYERSTKEDVLAFYDTLKKN-GINCVIRREHGTDIDAACGQL 344
>gi|406997882|gb|EKE15886.1| YloN [uncultured bacterium]
Length = 346
Score = 199 bits (506), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 120/333 (36%), Positives = 189/333 (56%), Gaps = 24/333 (7%)
Query: 31 IWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHSVVDSSDDVTTKLLVKLQNGG 90
I K V + + E ++ L + K L +++ S + + K L+K +
Sbjct: 23 IQKAVFQEDIVSFSEISTIAKDLREFLEKEMKILFLEPVNILVSKNGDSIKALLKTSDDN 82
Query: 91 FVEAVIMRYDSSLGKYNGKPRPGGPRS-TLCISSQVGCKMGCNFCATGTMGFKSNLSSGE 149
F+E V++ SS N K RS + C+SSQ+GC MGC FCATG MGFK NL++ E
Sbjct: 83 FIETVLL---SSSDLENEK------RSWSACVSSQIGCAMGCRFCATGKMGFKRNLTAEE 133
Query: 150 IVEQLV----HASRLSN--IRNVVFMGMGEPLNNYAALVEAVRIMTGLP-FQVSPKRITV 202
I +Q++ + +L N I N+V+MGMGEP N+ + E+++I+T F + ++V
Sbjct: 134 ITDQILFWKQYLKKLKNNSISNIVYMGMGEPFLNWENVSESLKILTSKDLFGFGSRSLSV 193
Query: 203 STVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQ 262
ST GI I K + P +NLA+SLH P + R + MP + LEK+ AL++Y + ++
Sbjct: 194 STSGIAEGILKLAEEFPQVNLAISLHFPDDEKRSEFMPVNKKDNLEKIKEALQKYFQKTK 253
Query: 263 QKIFIEYIMLDGVNDEEQHAHQLGKLLETFQ----VVVNLIPFNPIGSVSQFRTSSDDKV 318
+K+F+EYI+LDG+ND E+ A +L K L + + +NLI +N + + F SS +K
Sbjct: 254 RKVFVEYILLDGINDSEKDAEKLAKYLHSIGNAHLLHINLIRYNM--TSADFLPSSRNKA 311
Query: 319 SSFQKILRGSYNIRTTVRKQMGQDISGACGQLV 351
F++ L I +T+RK +G++I GACGQL
Sbjct: 312 YIFKEFL-SKRKINSTIRKSLGEEIQGACGQLA 343
>gi|300087157|ref|YP_003757679.1| Cfr family radical SAM protein [Dehalogenimonas
lykanthroporepellens BL-DC-9]
gi|299526890|gb|ADJ25358.1| radical SAM enzyme, Cfr family [Dehalogenimonas
lykanthroporepellens BL-DC-9]
Length = 356
Score = 199 bits (506), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 128/344 (37%), Positives = 189/344 (54%), Gaps = 34/344 (9%)
Query: 22 GIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHSVVD------SS 75
G K F I +++ E N DE LP + L+ K + ++ H+ ++ S
Sbjct: 23 GEKPVFTGKIIRHLFECRNTIIDEPSYLPES----LKHKLRQISG--HAALEVLEESKSV 76
Query: 76 DDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCA 135
D K L L +G +E+ M + S GK R T+C+SSQVGC +GC +CA
Sbjct: 77 DGKNIKTLFGLDDGNTIESTAMEFGGSAGKI---------RRTVCVSSQVGCMIGCPYCA 127
Query: 136 TGTMGFKSNLSSGEIVEQLVH----ASRL--SNIRNVVFMGMGEPLNNYAALVEAVRIMT 189
TG GF NLS GE++EQ+++ R+ +++ NVVFMGMGEPL NY +V AV ++
Sbjct: 128 TGMNGFHRNLSPGEMIEQVLYYRGETGRVGRNSLTNVVFMGMGEPLLNYDNVVTAVSLLN 187
Query: 190 ---GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFP 246
G+ F ++IT+ST GIV I + + LAVS+ + ++R ++P R +P
Sbjct: 188 SHHGMGF--GARQITISTSGIVPGILRLAREDLYCQLAVSIQSATDELRNLLVPVNRKYP 245
Query: 247 LEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGS 306
L L+ A +EY + +++K+FIEY++ +GVND Q A L KLLE +NLI N G
Sbjct: 246 LAHLIEACREYSELTRRKVFIEYVLFEGVNDSIQDAEGLAKLLEPLDCSINLIIVNNSG- 304
Query: 307 VSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 350
+ FR +S D V +FQ++L S RT +R G DI CGQL
Sbjct: 305 IGTFRPTSYDTVVAFQRLLV-SKGFRTMLRLSRGTDIEAGCGQL 347
>gi|337287595|ref|YP_004627067.1| Ribosomal RNA large subunit methyltransferase N
[Thermodesulfobacterium sp. OPB45]
gi|334901333|gb|AEH22139.1| Ribosomal RNA large subunit methyltransferase N
[Thermodesulfobacterium geofontis OPF15]
Length = 362
Score = 199 bits (506), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 120/318 (37%), Positives = 175/318 (55%), Gaps = 30/318 (9%)
Query: 43 WDEFPSLPSAAYSLLRSKFKPLTSTLHSVVDSSDDV--TTKLLVKLQNGGFVEAVIMRYD 100
++E LP + + L F + L +VD +D+ T K +KL++ +E VI+
Sbjct: 43 FEEMTDLPKSLRTKLSENF---SLELPEIVDKEEDIDGTVKFALKLKDNNLIETVII--- 96
Query: 101 SSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRL 160
P TLC+S+QVGC +GC FC TG +GFK NL EI+ Q+V A R
Sbjct: 97 -----------PEKDHYTLCVSTQVGCPIGCKFCVTGKIGFKRNLEVYEIISQVVIARRY 145
Query: 161 SN-------IRNVVFMGMGEPLNNYAALVEAVRIMTGLP-FQVSPKRITVSTVGIVHAIN 212
+RN+VFMGMGEPL N L++A++I+ F S KR+TVSTVG++ +
Sbjct: 146 LKEKEEELPLRNIVFMGMGEPLLNLKNLIKALKILAHPKGFNYSRKRLTVSTVGLLKEME 205
Query: 213 KFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIML 272
+ LA+SLHAP ++R +++P A+ + +E+L+ A K++ + + IEY+++
Sbjct: 206 ILAKEF-STALAISLHAPTDEIRRELIPIAKKYSVEELILACKKFPRIKNSRTTIEYVII 264
Query: 273 DGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIR 332
VND + A +L LL+ + VNLIPFNP + F S + V FQK L S I
Sbjct: 265 KDVNDSLESAKKLADLLKGYPFKVNLIPFNPHPEIP-FERPSQEVVERFQKYLL-SRGIL 322
Query: 333 TTVRKQMGQDISGACGQL 350
TTVRK G I ACGQL
Sbjct: 323 TTVRKSKGLGIDAACGQL 340
>gi|53802993|ref|YP_115280.1| hypothetical protein MCA2887 [Methylococcus capsulatus str. Bath]
gi|81680833|sp|Q603C0.1|RLMN_METCA RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|53756754|gb|AAU91045.1| conserved hypothetical protein TIGR00048 [Methylococcus capsulatus
str. Bath]
Length = 366
Score = 199 bits (506), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 128/357 (35%), Positives = 198/357 (55%), Gaps = 35/357 (9%)
Query: 17 EFEKAGIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHSVVD--- 73
+ ++ G++ F+ L K + +W + + L+ + K L S L +V +
Sbjct: 18 DLDREGMEAFFVRLGEKPFRASQLLQWIHQRGVTD--FGLMTNLSKTLRSRLEAVSEIRP 75
Query: 74 -------SSDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVG 126
S D T K ++++ VE V++ P R+TLC+SSQVG
Sbjct: 76 PELVLEQRSADGTRKWVLQVDAVNRVETVLI--------------PDEGRNTLCVSSQVG 121
Query: 127 CKMGCNFCATGTMGFKSNLSSGEIVEQL-VHASRLSN---IRNVVFMGMGEPLNNYAALV 182
C + C+FC+T GF NL++ EI+ QL V RL I NVV MGMGEPL N+ +V
Sbjct: 122 CSLECSFCSTARQGFNRNLTTAEIIGQLWVAQHRLDEEQRISNVVLMGMGEPLLNFGNVV 181
Query: 183 EAVRIMT-GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPA 241
A R+M + +S +R+T+ST GIV A+++ +++ ++LAVSLHAP +R +++P
Sbjct: 182 AATRLMMDDFAYGLSKRRVTLSTSGIVPALDRL-AEVSDISLAVSLHAPDDTLRNELVPI 240
Query: 242 ARAFPLEKLMNALKEY-QKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIP 300
R +P+ +L+ A K Y +++K+ EY+MLDGVND +HA L +LL VNLIP
Sbjct: 241 NRKYPIRELLAACKRYVGTENRRKVTFEYVMLDGVNDRPEHARALVRLLSHVPSKVNLIP 300
Query: 301 FNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDK 357
FNP + S +R S + ++ F + L+ + I TT RK G+DI ACGQLV + D+
Sbjct: 301 FNPFPN-SAYRCSHPETIARFAQTLQDAGLI-TTTRKTRGRDIDAACGQLVGKVNDR 355
>gi|311748631|ref|ZP_07722416.1| radical SAM enzyme, Cfr family [Algoriphagus sp. PR1]
gi|126577157|gb|EAZ81405.1| radical SAM enzyme, Cfr family [Algoriphagus sp. PR1]
Length = 352
Score = 199 bits (506), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 120/342 (35%), Positives = 182/342 (53%), Gaps = 28/342 (8%)
Query: 16 AEFEKAGIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHSVVDSS 75
A EK + +W ++N +D+ ++ LL+ FK + L ++ S
Sbjct: 23 AHGEKKFRAKQVYDWLWNKSLKN----FDDMSNISLETRELLKKYFK-INHILVDLMQHS 77
Query: 76 DDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCA 135
D T K VKL + VE+V++ P R T C+SSQVGC + CNFCA
Sbjct: 78 SDGTIKNAVKLYDDKIVESVLI--------------PTSKRITACVSSQVGCSLDCNFCA 123
Query: 136 TGTMGFKSNLSSGEIVEQLVHASRLSN------IRNVVFMGMGEPLNNYAALVEAV-RIM 188
T + NL+ EI +Q+V + + N+VFMGMGEPL NYA ++ A+ +I
Sbjct: 124 TARLKRMRNLNPDEIYDQVVAIKEEAEKYFERPLTNIVFMGMGEPLLNYANVLAAIDKIT 183
Query: 189 TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLE 248
+ ++ +RIT+STVG+ I K D NLAVSLH+ + + R ++MP + P+E
Sbjct: 184 SPEGLGMAARRITLSTVGVTKMIRKMADDEVKFNLAVSLHSAINETRSRLMPINDSNPVE 243
Query: 249 KLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVS 308
+L +LK + K + +K+ EY++ DGVND+E+HA L K + VN+I +NPI
Sbjct: 244 ELGESLKYWYKKTGRKVTYEYVIWDGVNDDERHARALAKFCKLIPSKVNIIQYNPIDE-G 302
Query: 309 QFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 350
+FR + + V + ++L S + VRK GQDI ACGQL
Sbjct: 303 EFRQAKQEAVDMYIRVLE-SQGVIAKVRKSRGQDIDAACGQL 343
>gi|116871870|ref|YP_848651.1| ribosomal RNA large subunit methyltransferase N [Listeria
welshimeri serovar 6b str. SLCC5334]
gi|123460725|sp|A0AFT6.1|RLMN_LISW6 RecName: Full=Probable dual-specificity RNA methyltransferase RlmN;
AltName: Full=23S rRNA
(adenine(2503)-C(2))-methyltransferase; AltName:
Full=23S rRNA m2A2503 methyltransferase; AltName:
Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=tRNA (adenine(37)-C(2))-methyltransferase;
AltName: Full=tRNA m2A37 methyltransferase
gi|116740748|emb|CAK19868.1| conserved hypothetical protein [Listeria welshimeri serovar 6b str.
SLCC5334]
Length = 367
Score = 199 bits (506), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 116/345 (33%), Positives = 186/345 (53%), Gaps = 30/345 (8%)
Query: 18 FEKAGIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHSVVDSSDD 77
E G K+ +W ++ ++E ++P LL + F + + VV S D
Sbjct: 18 LEAHGQKKFRATQVWDWLYRKRVKTFEEMSNVPKETIELLTANF-VMNTLEEQVVQESTD 76
Query: 78 VTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATG 137
TTK L KL +G +E V+M+ + L ++C+++QVGC +GC FCA+G
Sbjct: 77 GTTKYLFKLSDGNLIETVMMKQEYGL--------------SVCVTTQVGCNIGCTFCASG 122
Query: 138 TMGFKSNLSSGEIVEQLVHASRLSNIRN-------VVFMGMGEPLNNYAALVEAVRIMT- 189
+ +L++GEIVEQ+++ + RN VV MG+GEP +NY +++ +R++
Sbjct: 123 LLKKSRDLTAGEIVEQIMNVQHYLDGRNLEERVSHVVVMGIGEPFDNYDNVMDFLRVINH 182
Query: 190 --GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPL 247
GL + + ITVST G+ I F ++ +NLA+SLHAP ++R IM + + +
Sbjct: 183 DKGLA--IGARHITVSTSGLAPRIIDFANEDFQVNLAISLHAPNNELRTSIMRINKTYSI 240
Query: 248 EKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQ--VVVNLIPFNPIG 305
EKLM A+ Y + ++I EYIML GVND ++ A +L LL + VNLIP+NP+
Sbjct: 241 EKLMEAIHYYVNKTNRRITFEYIMLKGVNDHKKEALELAALLGEHRHLAYVNLIPYNPVD 300
Query: 306 SVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 350
+ S+ + V +F L+ + I +R++ G DI ACGQL
Sbjct: 301 EHIDYERSTKEDVLAFYDTLKKN-GINCVIRREHGTDIDAACGQL 344
>gi|399116783|emb|CCG19592.1| ribosomal RNA large subunit methyltransferase [Taylorella
asinigenitalis 14/45]
Length = 380
Score = 199 bits (506), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 120/301 (39%), Positives = 165/301 (54%), Gaps = 35/301 (11%)
Query: 75 SDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFC 134
S D T K L +QN +E V + P R TLCISSQ GC + C FC
Sbjct: 77 SSDGTIKWLFDVQNNNAIETVYI--------------PEDDRGTLCISSQAGCTVACRFC 122
Query: 135 ATGTMGFKSNLSSGEIVEQL----------------VHASRLSNIRNVVFMGMGEPLNNY 178
+TG GF NL++ EI+ Q+ + A I NVVFMGMGEPL NY
Sbjct: 123 STGHQGFNRNLNTSEIIGQVWWARDEIKKSLNTDSGLEAEDDRVITNVVFMGMGEPLLNY 182
Query: 179 AALVEAVRIMTGL-PFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQ 237
++ A++++ + +S +R+TVST G++ ++K D P + LAVSLHAP ++R Q
Sbjct: 183 DQVLPAIKLLIDQNAYGLSKRRVTVSTSGVIPFMDKLSQDCP-VALAVSLHAPNDELRDQ 241
Query: 238 IMPAARAFPLEKLMNALKEYQKNSQQK-IFIEYIMLDGVNDEEQHAHQLGKLLETFQVVV 296
++P + +PL +LM+A Y + + + I EYIMLDGVND + HA QL + + V
Sbjct: 242 LIPLNKKYPLRELMDACNRYIEFAPRDFITFEYIMLDGVNDTDAHAKQLIDICREVKSKV 301
Query: 297 NLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPD 356
NLIPFNP S R SS ++V +F IL + I T RK G DI ACGQL ++ D
Sbjct: 302 NLIPFNPFPE-SGLRRSSHERVRAFSAILNDA-GIVATTRKTRGDDIDAACGQLAGDIKD 359
Query: 357 K 357
K
Sbjct: 360 K 360
>gi|290892377|ref|ZP_06555371.1| 23S rRNA methyltransferase [Listeria monocytogenes FSL J2-071]
gi|404406946|ref|YP_006689661.1| hypothetical protein LMOSLCC2376_0463 [Listeria monocytogenes
SLCC2376]
gi|290557943|gb|EFD91463.1| 23S rRNA methyltransferase [Listeria monocytogenes FSL J2-071]
gi|404241095|emb|CBY62495.1| hypothetical protein LMOSLCC2376_0463 [Listeria monocytogenes
SLCC2376]
Length = 367
Score = 199 bits (506), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 116/345 (33%), Positives = 186/345 (53%), Gaps = 30/345 (8%)
Query: 18 FEKAGIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHSVVDSSDD 77
E G K+ +W ++ ++E ++P LL + F + + VV S D
Sbjct: 18 LEAHGQKKFRATQVWDWLYRKRVKTFEEMSNVPKETIELLTANF-VMNTLEEQVVQESTD 76
Query: 78 VTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATG 137
TTK L KL +G +E V+M+ + L ++C+++QVGC +GC FCA+G
Sbjct: 77 GTTKYLFKLSDGNLIETVMMKQEYGL--------------SVCVTTQVGCNIGCTFCASG 122
Query: 138 TMGFKSNLSSGEIVEQLVHASRLSNIRN-------VVFMGMGEPLNNYAALVEAVRIMT- 189
+ +L++GEIVEQ+++ + RN VV MG+GEP +NY +++ +R++
Sbjct: 123 LLKKSRDLTAGEIVEQIMNVQHYLDGRNLEERVSHVVVMGIGEPFDNYDNVMDFLRVINH 182
Query: 190 --GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPL 247
GL + + ITVST G+ I F ++ +NLA+SLHAP ++R IM + + +
Sbjct: 183 DKGLA--IGARHITVSTSGLAPRIIDFANEDFQVNLAISLHAPNNELRTSIMRINKTYSI 240
Query: 248 EKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQ--VVVNLIPFNPIG 305
EKLM A+ Y + ++I EYIML GVND ++ A +L LL + VNLIP+NP+
Sbjct: 241 EKLMEAIHYYVNKTNRRITFEYIMLKGVNDHKKEALELAALLGEHRHLAYVNLIPYNPVD 300
Query: 306 SVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 350
+ S+ + V +F L+ + I +R++ G DI ACGQL
Sbjct: 301 EHIDYERSTKEDVLAFYDTLKKN-GINCVIRREHGTDIDAACGQL 344
>gi|374321186|ref|YP_005074315.1| hypothetical protein HPL003_06645 [Paenibacillus terrae HPL-003]
gi|357200195|gb|AET58092.1| hypothetical protein HPL003_06645 [Paenibacillus terrae HPL-003]
Length = 365
Score = 199 bits (505), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 112/330 (33%), Positives = 179/330 (54%), Gaps = 26/330 (7%)
Query: 31 IWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHSVVDSSDDVTTKLLVKLQNGG 90
+W + ++ + LL F P+ + V S D T K L +LQ+G
Sbjct: 31 VWDALYRKRITDFAAMTEVHENCTRLLAEHF-PIETLEEHVKQQSADGTVKFLFRLQDGN 89
Query: 91 FVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEI 150
+E V+MR+ L ++C+++QVGC +GC+FCA+G + +LSSGEI
Sbjct: 90 LIETVLMRHKFGL--------------SVCVTTQVGCNIGCSFCASGLLKKSRDLSSGEI 135
Query: 151 VEQLVHASRL-------SNIRNVVFMGMGEPLNNYAALVEAVRIMTGLP-FQVSPKRITV 202
VEQ++ + +VV MG+GEP +N+ L + +R++ + P+ ITV
Sbjct: 136 VEQIMKVQLYLDQERPGDRVSHVVVMGIGEPFDNFVNLSDFIRVIKDHKGLAIGPRHITV 195
Query: 203 STVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQ 262
ST G+ I +F +NLA+SLHAP + R +IM RA P+E+LM A+ Y +
Sbjct: 196 STSGLADKIIEFADSDLHVNLAISLHAPNNETRTRIMKINRAIPIEELMQAIDYYLDKTN 255
Query: 263 QKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVV--VNLIPFNPIGSVSQFRTSSDDKVSS 320
++I +EYI+L +ND ++HA +L +L+ + + VNLIP+NP+ SQ++ S + ++
Sbjct: 256 RRITLEYILLKDINDSKEHALELAELVGHRRNLANVNLIPYNPVDEHSQYQRSESESITG 315
Query: 321 FQKILRGSYNIRTTVRKQMGQDISGACGQL 350
F IL+ I +VR + G DI ACGQL
Sbjct: 316 FYDILKKQ-GISCSVRLEHGVDIDAACGQL 344
>gi|315646180|ref|ZP_07899300.1| ribosomal RNA large subunit methyltransferase N [Paenibacillus
vortex V453]
gi|315278379|gb|EFU41695.1| ribosomal RNA large subunit methyltransferase N [Paenibacillus
vortex V453]
Length = 346
Score = 199 bits (505), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 112/325 (34%), Positives = 181/325 (55%), Gaps = 25/325 (7%)
Query: 32 WKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHSVVDSSDDVTTKLLVKLQNGGF 91
W YV + N +++E +L L +F +T + + ++S D T K L L +
Sbjct: 33 WLYV-KRVN-DFEEMTNLSKELRGKLEQQFSFVTLSEITKLESKDG-TVKFLFGLHDDHA 89
Query: 92 VEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIV 151
+E VIM+++ +++C+++QVGC++GC FCA+ G K NL+SGEIV
Sbjct: 90 IETVIMKHNYG--------------NSICVTTQVGCRIGCTFCASTLGGLKRNLTSGEIV 135
Query: 152 EQLVHASRL-----SNIRNVVFMGMGEPLNNYAALVEAVRIMTGLP-FQVSPKRITVSTV 205
Q+V A ++ + ++V MG GEP NY A ++ +R M + + ITVST
Sbjct: 136 AQVVQAQKILDKTGERVSSIVIMGSGEPFENYEATMKFLRTMIHEKGLNIGQRHITVSTS 195
Query: 206 GIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKI 265
GIV I KF + +NLA+S+HAP +R ++MP R FP + ++ +L+ YQ + ++I
Sbjct: 196 GIVPNIYKFTEENTQINLAISIHAPNDKLRSKLMPVNRRFPFDDVIESLRHYQAKTGRRI 255
Query: 266 FIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKIL 325
EY ++ GVND+ +HA +L +++ VNLIP N + RTS +D + FQ+ L
Sbjct: 256 TFEYALIGGVNDQVEHAEELADVIKDMNCFVNLIPVNHVPERKYVRTSRND-IFKFQRAL 314
Query: 326 RGSYNIRTTVRKQMGQDISGACGQL 350
+ T+R++ G DI+ ACGQL
Sbjct: 315 -ADKGVNVTIRREQGHDIAAACGQL 338
>gi|16802525|ref|NP_464010.1| ribosomal RNA large subunit methyltransferase N [Listeria
monocytogenes EGD-e]
gi|386049409|ref|YP_005967400.1| ribosomal RNA large subunit methyltransferase N [Listeria
monocytogenes FSL R2-561]
gi|404282920|ref|YP_006683817.1| hypothetical protein LMOSLCC2372_0490 [Listeria monocytogenes
SLCC2372]
gi|405757476|ref|YP_006686752.1| hypothetical protein LMOSLCC2479_0489 [Listeria monocytogenes
SLCC2479]
gi|81592923|sp|Q8Y9P2.1|RLMN_LISMO RecName: Full=Probable dual-specificity RNA methyltransferase RlmN;
AltName: Full=23S rRNA
(adenine(2503)-C(2))-methyltransferase; AltName:
Full=23S rRNA m2A2503 methyltransferase; AltName:
Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=tRNA (adenine(37)-C(2))-methyltransferase;
AltName: Full=tRNA m2A37 methyltransferase
gi|16409858|emb|CAC98561.1| lmo0482 [Listeria monocytogenes EGD-e]
gi|346423255|gb|AEO24780.1| ribosomal RNA large subunit methyltransferase N [Listeria
monocytogenes FSL R2-561]
gi|404232422|emb|CBY53825.1| hypothetical protein LMOSLCC2372_0490 [Listeria monocytogenes
SLCC2372]
gi|404235358|emb|CBY56760.1| hypothetical protein LMOSLCC2479_0489 [Listeria monocytogenes
SLCC2479]
Length = 367
Score = 199 bits (505), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 116/345 (33%), Positives = 186/345 (53%), Gaps = 30/345 (8%)
Query: 18 FEKAGIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHSVVDSSDD 77
E G K+ +W ++ ++E ++P LL + F + + VV S D
Sbjct: 18 LEAHGQKKFRATQVWDWLYRKRVKTFEEMSNVPKETIELLTANF-VMNTLEEQVVQESTD 76
Query: 78 VTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATG 137
TTK L KL +G +E V+M+ + L ++C+++QVGC +GC FCA+G
Sbjct: 77 GTTKYLFKLSDGNLIETVMMKQEYGL--------------SVCVTTQVGCNIGCTFCASG 122
Query: 138 TMGFKSNLSSGEIVEQLVHASRLSNIRN-------VVFMGMGEPLNNYAALVEAVRIMT- 189
+ +L++GEIVEQ+++ + RN VV MG+GEP +NY +++ +R++
Sbjct: 123 LLKKSRDLTAGEIVEQIMNVQHYLDGRNLEERVSHVVVMGIGEPFDNYDNVMDFLRVINH 182
Query: 190 --GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPL 247
GL + + ITVST G+ I F ++ +NLA+SLHAP ++R IM + + +
Sbjct: 183 DKGLA--IGARHITVSTSGLAPRIIDFANEDFQVNLAISLHAPNNELRTSIMRINKTYSI 240
Query: 248 EKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQ--VVVNLIPFNPIG 305
EKLM A+ Y + ++I EYIML GVND ++ A +L LL + VNLIP+NP+
Sbjct: 241 EKLMEAIHYYVNKTNRRITFEYIMLKGVNDHKKEALELAALLGEHRHLAYVNLIPYNPVD 300
Query: 306 SVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 350
+ S+ + V +F L+ + I +R++ G DI ACGQL
Sbjct: 301 EHIDYERSTKEDVLAFYDTLKKN-GINCVIRREHGTDIDAACGQL 344
>gi|314933392|ref|ZP_07840757.1| radical SAM enzyme, Cfr family [Staphylococcus caprae C87]
gi|313653542|gb|EFS17299.1| radical SAM enzyme, Cfr family [Staphylococcus caprae C87]
Length = 364
Score = 199 bits (505), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 109/313 (34%), Positives = 172/313 (54%), Gaps = 23/313 (7%)
Query: 44 DEFPSLPSAAYSLLRSKFKPLTSTLHSVVDSSDDVTTKLLVKLQNGGFVEAVIMRYDSSL 103
DE +L +L+ F +T+ V S D T K L +LQ+G +E V+MR++
Sbjct: 59 DEMTNLSKELRQVLKDNF-AMTTLTTVVKQESKDGTIKFLFELQDGYTIETVLMRHEYG- 116
Query: 104 GKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRL--- 160
+++C+++QVGC++GC FCA+ G K NL +GEIV Q++ +
Sbjct: 117 -------------NSVCVTTQVGCRIGCTFCASTLGGLKRNLEAGEIVSQVLTVQKALDE 163
Query: 161 --SNIRNVVFMGMGEPLNNYAALVEAVRIMTGL-PFQVSPKRITVSTVGIVHAINKFHSD 217
+ +V MG+GEP NY +++ +RI+ + + ITVST GI+ I F +
Sbjct: 164 TDERVSQIVIMGIGEPFENYDEMMDFLRIVNDDNSLNIGARHITVSTSGIIPRIYDFAEE 223
Query: 218 LPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVND 277
+N AVSLH ++R ++MP RA+ +EKLM A+K YQ+ + +++ EY + GVND
Sbjct: 224 DIQINFAVSLHGAKDEIRSRLMPINRAYNVEKLMEAIKYYQEQTNRRVTFEYGLFGGVND 283
Query: 278 EEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRK 337
+ +HA L L++ VNLIP N + + +T DD + F+K L+ I T+R+
Sbjct: 284 QLEHARDLAHLIKNLNCHVNLIPVNHVPERNYVKTPKDD-IFKFEKELK-RLGINATIRR 341
Query: 338 QMGQDISGACGQL 350
+ G DI ACGQL
Sbjct: 342 EQGSDIDAACGQL 354
>gi|312910636|ref|ZP_07769477.1| radical SAM enzyme, Cfr family, partial [Enterococcus faecalis
DAPTO 516]
gi|311289012|gb|EFQ67568.1| radical SAM enzyme, Cfr family [Enterococcus faecalis DAPTO 516]
Length = 360
Score = 199 bits (505), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 118/345 (34%), Positives = 185/345 (53%), Gaps = 30/345 (8%)
Query: 18 FEKAGIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHSVVDSSDD 77
F G K+ +W+++ + E ++ + +LL F L +V + D
Sbjct: 18 FLAHGEKKFRATQVWEWLYTKRVASFSEMSNISKSLMTLLEENF-SLNPLKQVIVQEAQD 76
Query: 78 VTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATG 137
T K L +L + +E V+MR + L ++C+++QVGC +GC FCA+G
Sbjct: 77 GTVKYLFELPDKNMIETVLMRQEYGL--------------SVCVTTQVGCNIGCTFCASG 122
Query: 138 TMGFKSNLSSGEIVEQLVHASRLSNIR-------NVVFMGMGEPLNNYAALVEAVRIMT- 189
+ + +L++GEIV Q++ + R +VV MG+GEP +NYA ++ +R +
Sbjct: 123 LLKKQRDLTAGEIVAQIMWVQHYFDERGLDERVSHVVVMGIGEPFDNYANVMNFLRTIND 182
Query: 190 --GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPL 247
GL + + ITVST G+V I +F +NLA+SLHAP +VR IM R+FP+
Sbjct: 183 DKGLA--IGARHITVSTSGLVPKIREFADSGLQVNLAISLHAPNNEVRTSIMRINRSFPI 240
Query: 248 EKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVV--VNLIPFNPIG 305
EKLM A+ EY + + +++ EYIML VND +HA QL LL + + VNLIP+NP+
Sbjct: 241 EKLMAAIDEYIEKTNRRVTFEYIMLSQVNDRPEHAQQLADLLRNKKKLSYVNLIPYNPVS 300
Query: 306 SVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 350
Q+ SS + V F +L+ + I +RK+ G DI A GQ+
Sbjct: 301 EHDQYSRSSKEAVLKFYDVLKKN-GINCVIRKEHGTDIDAAFGQI 344
>gi|372489753|ref|YP_005029318.1| 2-oxoglutarate synthase subunit, 2-oxoacid-ferredoxin
oxidoreductase subunit CD [Dechlorosoma suillum PS]
gi|359356306|gb|AEV27477.1| 23S rRNA m2A2503 methyltransferase [Dechlorosoma suillum PS]
Length = 367
Score = 199 bits (505), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 131/378 (34%), Positives = 193/378 (51%), Gaps = 36/378 (9%)
Query: 9 FDGGIIRAEFEKAGIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTL 68
FD + A F G K + +++ ++D + + +L++ L +
Sbjct: 7 FDAEGLTAWFAARGEKPFRARQVLRWMHHFGQADFDAMTDIAKSLREMLKANAVVLPPAI 66
Query: 69 HSVVDS-SDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGC 127
V D SDD T K L + NG VE V + P R TLCIS+Q GC
Sbjct: 67 --VSDKLSDDGTRKFLFDVGNGNAVETVFI--------------PEDDRGTLCISTQAGC 110
Query: 128 KMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN------------IRNVVFMGMGEPL 175
+ C FC+TG GF NL+ EI+ QL A+R I NVV MGMGEPL
Sbjct: 111 ALDCAFCSTGKQGFNRNLAVSEIIGQLWQANRALGVDPRHPDKAERIISNVVLMGMGEPL 170
Query: 176 NNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDV 234
N+ A V A+++M + +S +R+TVST G+V A+++ + P + LAVSLHAP +
Sbjct: 171 ANFEAAVAALKLMLDDNAYGLSRRRVTVSTSGLVPAMDRLRDECP-VALAVSLHAPNDKL 229
Query: 235 RCQIMPAARAFPLEKLMNALKEY-QKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQ 293
R +++P + +P+ +LM A + Y +K + + EY+MLDGVND + HA +L +
Sbjct: 230 RDELVPINQKYPIAELMAACQRYLEKAPRDFVTFEYVMLDGVNDSDAHARELLAITRDVP 289
Query: 294 VVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVN 353
NLIPFNP S FR S +++ F IL + + TT RK G DI ACGQL
Sbjct: 290 CKFNLIPFNPFPG-SPFRRSKAERIRRFADILIQA-GVVTTTRKTRGDDIDAACGQLAGQ 347
Query: 354 LPDKI--SAKSTPPVTDI 369
+ DK + + T P+ ++
Sbjct: 348 VQDKTRRNERRTIPIQEM 365
>gi|418294917|ref|ZP_12906794.1| Ribosomal RNA large subunit methyltransferase N [Pseudomonas
stutzeri ATCC 14405 = CCUG 16156]
gi|379066277|gb|EHY79020.1| Ribosomal RNA large subunit methyltransferase N [Pseudomonas
stutzeri ATCC 14405 = CCUG 16156]
Length = 382
Score = 199 bits (505), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 128/356 (35%), Positives = 195/356 (54%), Gaps = 38/356 (10%)
Query: 18 FEKAGIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHSVV---DS 74
FE G K+ + K++ ++D +L A LR K K + D
Sbjct: 22 FESVGEKRFRAGQVMKWIHHFGVDDFDAMSNLGKA----LREKLKACAEIRGPEIVSEDI 77
Query: 75 SDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFC 134
S D T K +V++ +G VE V + P G R TLC+SSQ GC + C+FC
Sbjct: 78 SSDGTRKWVVRVASGSCVETVYI--------------PQGGRGTLCVSSQAGCALDCSFC 123
Query: 135 ATGTMGFKSNLSSGEIVEQLVHASRL---------SNIRNVVFMGMGEPLNNYAALVEAV 185
+TG GF SNL++ E++ Q+ A++ I NVV MGMGEPL N+ +V A+
Sbjct: 124 STGKQGFNSNLTAAEVIGQVWIANKSFGSIPAKIDRAITNVVMMGMGEPLLNFDNVVAAM 183
Query: 186 RIMT-GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARA 244
IM L + +S +++T+ST G+V I++ + + ++LA+SLHAP ++R Q++P +
Sbjct: 184 HIMMDDLGYGISKRKVTLSTSGVVPMIDEL-AKVIDVSLALSLHAPNDELRDQLVPINKK 242
Query: 245 FPLEKLMNALKEY--QKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFN 302
+PL+ L+ A K Y Q ++ + IEY +L G+ND+ +HA Q+ LL +NLIPFN
Sbjct: 243 YPLDMLLAACKRYISQLGEKRVLTIEYTLLKGINDQPEHAEQMITLLANIPCKINLIPFN 302
Query: 303 PIGSVSQFRTSSDDKVSSFQKILR-GSYNIRTTVRKQMGQDISGACGQLVVNLPDK 357
P S + S++ + FQ ILR G +N+ TVR G+DI ACGQLV + D+
Sbjct: 303 PFPH-SGYERPSNNAIRRFQDILRKGGHNV--TVRTTRGEDIDAACGQLVGQVLDR 355
>gi|32491320|ref|NP_871574.1| hypothetical protein WGLp571 [Wigglesworthia glossinidia
endosymbiont of Glossina brevipalpis]
gi|81741588|sp|Q8D1Y5.1|RLMN_WIGBR RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|25166527|dbj|BAC24717.1| yfgB [Wigglesworthia glossinidia endosymbiont of Glossina
brevipalpis]
Length = 382
Score = 199 bits (505), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 124/322 (38%), Positives = 188/322 (58%), Gaps = 34/322 (10%)
Query: 57 LRSKFKPLTSTLHSVVDS---SDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPG 113
L++K K + H ++S S D T K ++K+ N +E V + P
Sbjct: 75 LKNKLKNIIKIDHLDIESENISQDGTIKWVLKI-NDQNIETVYI--------------PE 119
Query: 114 GPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN---------IR 164
R+TLCISSQ+GC + C FCAT GF NL+S EI+ Q+ +A ++ N I
Sbjct: 120 INRATLCISSQIGCALNCKFCATSYQGFNRNLNSYEIISQIWYAMKIINDRNNFKLKKIT 179
Query: 165 NVVFMGMGEPLNNYAALVEAVR-IMTGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNL 223
N+V MGMGEPL N LV A++ I+ F +S +RIT+ST GI I K L + L
Sbjct: 180 NIVMMGMGEPLLNLKNLVPAIKIILDNYGFGLSKRRITISTAGISPVIKKL-GKLIDVKL 238
Query: 224 AVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEY---QKNSQQKIFIEYIMLDGVNDEEQ 280
A+SLHAP +R +IMP + + ++ ++ + K+Y K ++ KI IEYIML+ +ND+ +
Sbjct: 239 AISLHAPNDIIRNKIMPINKKYNIKSILLSAKKYISTSKANKGKISIEYIMLNEINDKTE 298
Query: 281 HAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMG 340
HA+QL L+ +NLIP+NP V +++ S+ +K+++F KIL + I TT+RKQ G
Sbjct: 299 HAYQLINCLKNIPCKINLIPWNPFPYV-KYKCSNFNKINNFYKIL-IKHGITTTIRKQRG 356
Query: 341 QDISGACGQLVVNLPDKISAKS 362
DI ACGQL N+ ++I+ ++
Sbjct: 357 IDIKAACGQLSGNVINRINKRN 378
>gi|270156690|ref|ZP_06185347.1| Cfr family radical SAM enzyme [Legionella longbeachae D-4968]
gi|289164863|ref|YP_003455001.1| Fe-S containing enzyme [Legionella longbeachae NSW150]
gi|269988715|gb|EEZ94969.1| Cfr family radical SAM enzyme [Legionella longbeachae D-4968]
gi|288858036|emb|CBJ11896.1| putative Fe-S containing enzyme [Legionella longbeachae NSW150]
Length = 376
Score = 199 bits (505), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 118/296 (39%), Positives = 172/296 (58%), Gaps = 28/296 (9%)
Query: 75 SDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFC 134
S+D T K L+KL+ G +E V + P R TLC+SSQVGC + C+FC
Sbjct: 76 SNDGTHKWLLKLECGNCIETVFI--------------PEANRGTLCVSSQVGCALNCSFC 121
Query: 135 ATGTMGFKSNLSSGEIVEQLVHASR-LSN--------IRNVVFMGMGEPLNNYAALVEAV 185
+T GF NL++ EI+ Q+ A R LS + NVV MGMGEPL N+ +V A+
Sbjct: 122 STAKQGFNRNLTTAEIIGQVWLAVRELSQSQGNHDKRVTNVVMMGMGEPLLNFDNVVSAM 181
Query: 186 RIMTG-LPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARA 244
IM + +S +R+T+ST G++ + + P + LAVSLHAP ++R +++P +
Sbjct: 182 DIMMDDFAYGLSKRRVTLSTSGVLPDLERLREVSP-VALAVSLHAPNDELRNELVPINKK 240
Query: 245 FPLEKLMNALKEYQKNS-QQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNP 303
+PL +LM K Y KN ++K+ EY+ML GVND+ +HA QL KLL VNLIPFNP
Sbjct: 241 YPLAQLMALCKIYFKNEPRRKVTFEYVMLKGVNDQPEHAIQLIKLLRNIPAKVNLIPFNP 300
Query: 304 IGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDKIS 359
++Q+ SS + + +F++ L ++ I T RK G DI ACGQL + D+ +
Sbjct: 301 F-PMTQYERSSQETIDAFREKLM-AHGINTITRKTRGDDIDAACGQLAGEVKDRTT 354
>gi|227503385|ref|ZP_03933434.1| possible Fe-S-cluster redox protein [Corynebacterium accolens ATCC
49725]
gi|306836373|ref|ZP_07469351.1| cfr family radical SAM enzyme [Corynebacterium accolens ATCC 49726]
gi|227075888|gb|EEI13851.1| possible Fe-S-cluster redox protein [Corynebacterium accolens ATCC
49725]
gi|304567733|gb|EFM43320.1| cfr family radical SAM enzyme [Corynebacterium accolens ATCC 49726]
Length = 374
Score = 199 bits (505), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 125/353 (35%), Positives = 189/353 (53%), Gaps = 33/353 (9%)
Query: 22 GIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHSVVDSSDDVTTK 81
G+ + I K+ E+ + +E +P+ ++ F P + D TTK
Sbjct: 41 GLPKFRAKQIAKHYYEHLTDDVEEMTDIPAGKREEVKEAFFPELMKPIRTTSTDDGETTK 100
Query: 82 LLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGF 141
L +L +G +E+V+MRY PG R+TLCISSQ GC M C FCATG G
Sbjct: 101 SLWRLHDGTLLESVLMRY------------PG--RATLCISSQAGCGMACPFCATGQGGL 146
Query: 142 KSNLSSGEIVEQLVH--------ASRLSNIRNVVFMGMGEPLNNYAALVEAVRIMTG--- 190
NLS+GEIVEQ H RLSN VVFMGMGEPL NY +V+AVR +TG
Sbjct: 147 DRNLSTGEIVEQFRHAAAAMAAEGGRLSN---VVFMGMGEPLANYKRVVQAVRQITGQDG 203
Query: 191 LPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKL 250
F +S + +TVSTVG+ AI K + LAVSLH P ++R ++P + ++++
Sbjct: 204 TGFGLSQRNVTVSTVGLAPAIRKLADEDLACTLAVSLHTPDDELRDSLVPVNNRWSVDEV 263
Query: 251 MNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLET---FQVVVNLIPFNPIGSV 307
++A + Y S +++ IEY ++ ND++ A LG+ L +V VN+IP NP
Sbjct: 264 LDAARYYADKSARRVSIEYALIRDKNDQDFRADMLGRKLHQKLGSKVHVNVIPLNPTPG- 322
Query: 308 SQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDKISA 360
S++ + +++ F + ++ + + TVR G +I+ ACGQL + + +SA
Sbjct: 323 SEWDAAPKARLNEFVRRVQ-AQGVPCTVRDTKGDEIAAACGQLAADEREDMSA 374
>gi|392988680|ref|YP_006487273.1| ribosomal RNA large subunit methyltransferase N [Enterococcus hirae
ATCC 9790]
gi|392336100|gb|AFM70382.1| ribosomal RNA large subunit methyltransferase N [Enterococcus hirae
ATCC 9790]
Length = 357
Score = 199 bits (505), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 117/345 (33%), Positives = 185/345 (53%), Gaps = 30/345 (8%)
Query: 18 FEKAGIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKF--KPLTSTLHSVVDSS 75
F + G K+ +W+++ + ++ E +L + L +F PL VV +
Sbjct: 18 FLENGEKKFRAAQVWEWLYQKRVKDFSEMTNLSKNLITKLTDQFVINPLKQI---VVQEA 74
Query: 76 DDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCA 135
D T K L +L + +E V+MR + L ++C+++QVGC +GC FCA
Sbjct: 75 TDGTVKYLFELPDKNMIETVLMRQEYGL--------------SVCVTTQVGCNIGCTFCA 120
Query: 136 TGTMGFKSNLSSGEIVEQLVHASRLSNIR-------NVVFMGMGEPLNNYAALVEAVRIM 188
+G + +L++GEIV Q++ + R +VV MG+GEP +NY ++ + I+
Sbjct: 121 SGLLKKNRDLTAGEIVAQIMMVQHYFDERQEGERVSHVVVMGIGEPFDNYDNVMNFLHII 180
Query: 189 TGLP-FQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPL 247
+ + ITVST G+ + I +F + +NLA+SLHAP ++R IM R+FP+
Sbjct: 181 NDAKGLAIGARHITVSTSGLANKIKEFADNGLQVNLAISLHAPNNEIRTSIMRINRSFPI 240
Query: 248 EKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQ--VVVNLIPFNPIG 305
EKLM A+ EY + + ++I EYIML+ VND +HA QL LL+ + VNLIP+NP+
Sbjct: 241 EKLMAAVDEYLEKTNRRITFEYIMLNQVNDRPEHAQQLADLLKDKKKLTYVNLIPYNPVS 300
Query: 306 SVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 350
Q+ S V F +L+ + I +RK+ G DI ACGQL
Sbjct: 301 EHDQYSRSPKADVLKFYDVLKKN-GINCVIRKEHGTDIDAACGQL 344
>gi|322385917|ref|ZP_08059558.1| cfr family radical SAM enzyme [Streptococcus cristatus ATCC 51100]
gi|417922526|ref|ZP_12566014.1| 23S rRNA m2A2503 methyltransferase [Streptococcus cristatus ATCC
51100]
gi|321270032|gb|EFX52951.1| cfr family radical SAM enzyme [Streptococcus cristatus ATCC 51100]
gi|342832623|gb|EGU66918.1| 23S rRNA m2A2503 methyltransferase [Streptococcus cristatus ATCC
51100]
Length = 362
Score = 199 bits (505), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 119/349 (34%), Positives = 191/349 (54%), Gaps = 34/349 (9%)
Query: 19 EKAGIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKF--KPLTSTLHSVVDSSD 76
E G K+ IW+++ ++E +L + L +F PL +V S
Sbjct: 18 EAQGEKKFRAAQIWEWLYRKRVQSFEEMTNLSKDLIAKLNDQFVVNPLK---QRIVQESA 74
Query: 77 DVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCAT 136
D T K L +L +G +E V+MR L ++C+++QVGC +GC FCA+
Sbjct: 75 DGTVKYLFELSDGMLIETVLMRQHYGL--------------SVCVTTQVGCNIGCTFCAS 120
Query: 137 GTMGFKSNLSSGEIVEQLVHASRLSNIR-------NVVFMGMGEPLNNYAALVEAVRIMT 189
G + + +L++GEIV Q++ + + R ++V MG+GEP +NY +++ VR +
Sbjct: 121 GLIKKQRDLNNGEIVAQIMLVQKYFDERGQDERVSHIVVMGIGEPFDNYDNVLKFVRTVN 180
Query: 190 ---GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFP 246
GL + + ITVST G+ H I F ++ +NLAVSLHAP D+R IM R+FP
Sbjct: 181 DDKGLA--IGARHITVSTSGLAHKIRDFANEGVQVNLAVSLHAPNNDLRTSIMRINRSFP 238
Query: 247 LEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVV--VNLIPFNPI 304
+EKL A++ Y + + +++ EYIML+ VND + A +L +LL+ + + VNLIP+NP+
Sbjct: 239 IEKLFAAIEYYIETTNRRVTFEYIMLNEVNDGVEQAKELAELLKNIKKLSYVNLIPYNPV 298
Query: 305 GSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVN 353
Q+ S ++V +F L+ + + VR++ G DI ACGQL N
Sbjct: 299 SEHDQYSRSPKERVMAFYDTLKKN-GVNCVVRQEHGTDIDAACGQLRSN 346
>gi|15675432|ref|NP_269606.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
pyogenes SF370]
gi|21910720|ref|NP_664988.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
pyogenes MGAS315]
gi|28895590|ref|NP_801940.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
pyogenes SSI-1]
gi|56807972|ref|ZP_00365785.1| COG0820: Predicted Fe-S-cluster redox enzyme [Streptococcus
pyogenes M49 591]
gi|71903862|ref|YP_280665.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
pyogenes MGAS6180]
gi|71911074|ref|YP_282624.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
pyogenes MGAS5005]
gi|94994765|ref|YP_602863.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
pyogenes MGAS10750]
gi|209559696|ref|YP_002286168.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
pyogenes NZ131]
gi|383480286|ref|YP_005389180.1| ribosomal RNA large subunit methyltransferase (N) RmlN
[Streptococcus pyogenes MGAS15252]
gi|383494268|ref|YP_005411944.1| ribosomal RNA large subunit methyltransferase (N) RmlN
[Streptococcus pyogenes MGAS1882]
gi|386363063|ref|YP_006072394.1| radical SAM superfamily protein [Streptococcus pyogenes Alab49]
gi|410680928|ref|YP_006933330.1| radical SAM superfamily protein [Streptococcus pyogenes A20]
gi|421892226|ref|ZP_16322919.1| Ribosomal RNA large subunit methyltransferase N [Streptococcus
pyogenes NS88.2]
gi|81620716|sp|Q99YU5.1|RLMN_STRP1 RecName: Full=Probable dual-specificity RNA methyltransferase RlmN;
AltName: Full=23S rRNA
(adenine(2503)-C(2))-methyltransferase; AltName:
Full=23S rRNA m2A2503 methyltransferase; AltName:
Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=tRNA (adenine(37)-C(2))-methyltransferase;
AltName: Full=tRNA m2A37 methyltransferase
gi|122986830|sp|Q1J5R7.1|RLMN_STRPF RecName: Full=Probable dual-specificity RNA methyltransferase RlmN;
AltName: Full=23S rRNA
(adenine(2503)-C(2))-methyltransferase; AltName:
Full=23S rRNA m2A2503 methyltransferase; AltName:
Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=tRNA (adenine(37)-C(2))-methyltransferase;
AltName: Full=tRNA m2A37 methyltransferase
gi|123747764|sp|Q48SK0.1|RLMN_STRPM RecName: Full=Probable dual-specificity RNA methyltransferase RlmN;
AltName: Full=23S rRNA
(adenine(2503)-C(2))-methyltransferase; AltName:
Full=23S rRNA m2A2503 methyltransferase; AltName:
Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=tRNA (adenine(37)-C(2))-methyltransferase;
AltName: Full=tRNA m2A37 methyltransferase
gi|254807217|sp|B5XMB1.1|RLMN_STRPZ RecName: Full=Probable dual-specificity RNA methyltransferase RlmN;
AltName: Full=23S rRNA
(adenine(2503)-C(2))-methyltransferase; AltName:
Full=23S rRNA m2A2503 methyltransferase; AltName:
Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=tRNA (adenine(37)-C(2))-methyltransferase;
AltName: Full=tRNA m2A37 methyltransferase
gi|342179216|sp|P0DF10.1|RLMN_STRP3 RecName: Full=Probable dual-specificity RNA methyltransferase RlmN;
AltName: Full=23S rRNA
(adenine(2503)-C(2))-methyltransferase; AltName:
Full=23S rRNA m2A2503 methyltransferase; AltName:
Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=tRNA (adenine(37)-C(2))-methyltransferase;
AltName: Full=tRNA m2A37 methyltransferase
gi|342179217|sp|P0DF11.1|RLMN_STRPQ RecName: Full=Probable dual-specificity RNA methyltransferase RlmN;
AltName: Full=23S rRNA
(adenine(2503)-C(2))-methyltransferase; AltName:
Full=23S rRNA m2A2503 methyltransferase; AltName:
Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=tRNA (adenine(37)-C(2))-methyltransferase;
AltName: Full=tRNA m2A37 methyltransferase
gi|13622621|gb|AAK34327.1| conserved hypothetical protein [Streptococcus pyogenes M1 GAS]
gi|21904923|gb|AAM79791.1| conserved hypothetical protein [Streptococcus pyogenes MGAS315]
gi|28810839|dbj|BAC63773.1| conserved hypothetical protein [Streptococcus pyogenes SSI-1]
gi|71802957|gb|AAX72310.1| radical SAM family enzyme [Streptococcus pyogenes MGAS6180]
gi|71853856|gb|AAZ51879.1| radical SAM family enzyme [Streptococcus pyogenes MGAS5005]
gi|94548273|gb|ABF38319.1| Radical SAM family enzyme [Streptococcus pyogenes MGAS10750]
gi|209540897|gb|ACI61473.1| hypothetical protein Spy49_1185c [Streptococcus pyogenes NZ131]
gi|350277472|gb|AEQ24840.1| radical SAM superfamily protein [Streptococcus pyogenes Alab49]
gi|378928276|gb|AFC66482.1| ribosomal RNA large subunit methyltransferase (N) RmlN
[Streptococcus pyogenes MGAS15252]
gi|378929995|gb|AFC68412.1| ribosomal RNA large subunit methyltransferase (N) RmlN
[Streptococcus pyogenes MGAS1882]
gi|379982022|emb|CCG26641.1| Ribosomal RNA large subunit methyltransferase N [Streptococcus
pyogenes NS88.2]
gi|395454317|dbj|BAM30656.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
pyogenes M1 476]
gi|409693517|gb|AFV38377.1| radical SAM superfamily protein [Streptococcus pyogenes A20]
Length = 359
Score = 199 bits (505), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 120/343 (34%), Positives = 191/343 (55%), Gaps = 34/343 (9%)
Query: 22 GIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKF--KPLTSTLHSVVDSSDDVT 79
G KQ IW ++ + ++E ++ S+L F PL VV S D T
Sbjct: 21 GQKQFRATQIWDWLYKKRVQSFEEMTNISKDFVSILNDSFCVNPLK---QRVVQESADGT 77
Query: 80 TKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTM 139
K L +L +G +E V+MR ++ G ++C+++QVGC +GC FCA+G +
Sbjct: 78 VKYLFELPDGMLIETVLMR------QHYG--------HSVCVTTQVGCNIGCTFCASGLI 123
Query: 140 GFKSNLSSGEIVEQLVHASRLSNIR-------NVVFMGMGEPLNNYAALVEAVRIMT--- 189
+ +L+SGEI Q++ + + R +VV MG+GEP +NY ++ +R++
Sbjct: 124 KKQRDLNSGEITAQIMLVQKYFDDRKQGERVSHVVVMGIGEPFDNYKNVMCFLRVINDDN 183
Query: 190 GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEK 249
GL + + ITVST G+ H I F ++ +NLAVSLHAP D+R IM R+FPLEK
Sbjct: 184 GLA--IGARHITVSTSGLAHKIRDFANEGVQVNLAVSLHAPNNDLRSSIMRVNRSFPLEK 241
Query: 250 LMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVV--VNLIPFNPIGSV 307
L +A++ Y + + +++ EYIML+ VND + A +L L +T + + VNLIP+NP+
Sbjct: 242 LFSAIEYYIEKTNRRVTFEYIMLNEVNDSIKQAQELADLTKTIRKLSYVNLIPYNPVSEH 301
Query: 308 SQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 350
Q+ S ++V +F +L+ + + VR++ G DI ACGQL
Sbjct: 302 DQYSRSPKERVLAFYDVLKKN-GVNCVVRQEHGTDIDAACGQL 343
>gi|332305581|ref|YP_004433432.1| radical SAM family protein [Glaciecola sp. 4H-3-7+YE-5]
gi|410646698|ref|ZP_11357148.1| 23S rRNA (adenine2503-C2)-methyltransferase [Glaciecola agarilytica
NO2]
gi|332172910|gb|AEE22164.1| radical SAM enzyme, Cfr family [Glaciecola sp. 4H-3-7+YE-5]
gi|410133870|dbj|GAC05547.1| 23S rRNA (adenine2503-C2)-methyltransferase [Glaciecola agarilytica
NO2]
Length = 380
Score = 199 bits (505), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 127/365 (34%), Positives = 195/365 (53%), Gaps = 46/365 (12%)
Query: 18 FEKAGIKQHFIPL---------IWKYVIENPNCEWDEFPSLPSAAYSLLRSKFK---PLT 65
F +AG++++F + + K++ + ++D+ +L A LR K K +
Sbjct: 17 FNRAGLREYFSSIGEKPFRADQVMKWIYQAGVSDFDQMTNLNKA----LREKLKMQCEVK 72
Query: 66 STLHSVVDSSDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQV 125
+ + + D T K ++L+ G VE V + P R+TLC+SSQV
Sbjct: 73 APEIAYQQGATDGTIKFALRLEGGQEVETVWI--------------PDADRATLCVSSQV 118
Query: 126 GCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASR---LSN------IRNVVFMGMGEPLN 176
GC + C FC+T GF NLS EI+ Q+ + LSN I NVV MGMGEPL
Sbjct: 119 GCALECTFCSTAQQGFNRNLSVAEIIGQVWRVATTIGLSNDSAKRPITNVVMMGMGEPLL 178
Query: 177 NYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVR 235
N +V A+ +M L F +S +R+T+ST G+V A++ D + LA+SLHAP +R
Sbjct: 179 NLKNVVPAMDLMLDDLAFGLSKRRVTLSTSGVVPALDML-GDQIDVALAISLHAPDDTLR 237
Query: 236 CQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDEEQHAHQLGKLLETF 292
+I+P + +P+++ + ++ Y S Q K+ +EY+ML+G+ND AH L K+L
Sbjct: 238 DEIVPINKKYPIQEFLAGVRRYLAKSNANQGKVTVEYVMLNGINDSTDQAHALAKVLADT 297
Query: 293 QVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVV 352
+NLIPFNP S + SS+ ++ F K+L SY + VRK G DI ACGQLV
Sbjct: 298 PSKINLIPFNPYPG-SPYSRSSNSRIDRFAKVL-SSYGLMVVVRKTRGDDIDAACGQLVG 355
Query: 353 NLPDK 357
++ D+
Sbjct: 356 DVVDR 360
>gi|422808602|ref|ZP_16857013.1| Ribosomal RNA large subunit methyltransferase N [Listeria
monocytogenes FSL J1-208]
gi|378752216|gb|EHY62801.1| Ribosomal RNA large subunit methyltransferase N [Listeria
monocytogenes FSL J1-208]
Length = 367
Score = 199 bits (505), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 116/345 (33%), Positives = 186/345 (53%), Gaps = 30/345 (8%)
Query: 18 FEKAGIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHSVVDSSDD 77
E G K+ +W ++ ++E ++P LL + F + + VV S D
Sbjct: 18 LEAHGQKKFRATQVWDWLYRKRVKTFEEMSNVPKETIELLTANF-VMNTLEEQVVQESAD 76
Query: 78 VTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATG 137
TTK L KL +G +E V+M+ + L ++C+++QVGC +GC FCA+G
Sbjct: 77 GTTKYLFKLSDGNLIETVMMKQEYGL--------------SVCVTTQVGCNIGCTFCASG 122
Query: 138 TMGFKSNLSSGEIVEQLVHASRLSNIRN-------VVFMGMGEPLNNYAALVEAVRIMT- 189
+ +L++GEIVEQ+++ + RN VV MG+GEP +NY +++ +R++
Sbjct: 123 LLKKSRDLTAGEIVEQIMNVQHYLDGRNLEERVSHVVVMGIGEPFDNYDNVMDFLRVINH 182
Query: 190 --GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPL 247
GL + + ITVST G+ I F ++ +NLA+SLHAP ++R IM + + +
Sbjct: 183 DKGLA--IGARHITVSTSGLAPRIIDFANEDFQVNLAISLHAPNNELRTSIMRINKTYSI 240
Query: 248 EKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQ--VVVNLIPFNPIG 305
EKLM A+ Y + ++I EYIML GVND ++ A +L LL + VNLIP+NP+
Sbjct: 241 EKLMEAIHYYVNKTNRRITFEYIMLKGVNDHKKEALELAALLGEHRHLAYVNLIPYNPVD 300
Query: 306 SVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 350
+ S+ + V +F L+ + I +R++ G DI ACGQL
Sbjct: 301 EHIDYERSTKEDVLAFYDTLKKN-GINCVIRREHGTDIDAACGQL 344
>gi|315918044|ref|ZP_07914284.1| radical SAM domain-containing protein [Fusobacterium gonidiaformans
ATCC 25563]
gi|317058012|ref|ZP_07922497.1| radical SAM domain-containing protein [Fusobacterium sp. 3_1_5R]
gi|313683688|gb|EFS20523.1| radical SAM domain-containing protein [Fusobacterium sp. 3_1_5R]
gi|313691919|gb|EFS28754.1| radical SAM domain-containing protein [Fusobacterium gonidiaformans
ATCC 25563]
Length = 349
Score = 199 bits (505), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 114/286 (39%), Positives = 162/286 (56%), Gaps = 20/286 (6%)
Query: 74 SSDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNF 133
S D T K L +L++G +E V++R+ R+TLCISSQVGC + C+F
Sbjct: 74 SKIDKTEKFLFQLEDGNTIETVLLRHRDQ-------------RNTLCISSQVGCPVKCSF 120
Query: 134 CATGTMGFKSNLSSGEIVEQLVHASRLSNIR-----NVVFMGMGEPLNNYAALVEAVRIM 188
CATG GF NL EI+ Q+ R N R N+VFMGMGEPL N AL++A+ I+
Sbjct: 121 CATGQDGFVRNLRVSEILNQVYTVERRLNKRGEKLTNLVFMGMGEPLINIEALLKALEIL 180
Query: 189 TGLP-FQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPL 247
+ +S +RIT+ST GIV AI + + + LAVSLH+ + + R QI+P +A+PL
Sbjct: 181 SSEEGICISKRRITISTSGIVPAIERILMEKVPVELAVSLHSAINEKRDQIIPINKAYPL 240
Query: 248 EKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSV 307
E L L EYQ+ +++++ EYI++ N E A+ L F VVNLIP NP+
Sbjct: 241 EDLAAVLGEYQRQTKRRLTFEYILIKDFNVSEGDANALADFAHQFDHVVNLIPCNPVADT 300
Query: 308 SQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVN 353
R S+ K+ F L+ + ++R++ G DI GACGQL N
Sbjct: 301 GLER-PSEKKIERFYDYLKNVRKVNVSLRQEKGTDIDGACGQLRQN 345
>gi|300765131|ref|ZP_07075117.1| cfr family radical SAM enzyme [Listeria monocytogenes FSL N1-017]
gi|300514102|gb|EFK41163.1| cfr family radical SAM enzyme [Listeria monocytogenes FSL N1-017]
Length = 367
Score = 199 bits (505), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 116/345 (33%), Positives = 186/345 (53%), Gaps = 30/345 (8%)
Query: 18 FEKAGIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHSVVDSSDD 77
E G K+ +W ++ ++E ++P LL + F + + VV S D
Sbjct: 18 LEAHGQKKFRATQVWDWLYRKRVKTFEEMSNVPKETIELLTANF-VMNTLEEQVVQESTD 76
Query: 78 VTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATG 137
TTK L KL +G +E V+M+ + L ++C+++QVGC +GC FCA+G
Sbjct: 77 GTTKYLFKLSDGNLIETVMMKQEYGL--------------SVCVTTQVGCNIGCTFCASG 122
Query: 138 TMGFKSNLSSGEIVEQLVHASRLSNIRN-------VVFMGMGEPLNNYAALVEAVRIMT- 189
+ +L++GEIVEQ+++ + RN VV MG+GEP +NY +++ +R++
Sbjct: 123 LLKKSRDLTAGEIVEQIMNVQHYLDGRNLEERVSHVVVMGIGEPFDNYDNVMDFLRVINH 182
Query: 190 --GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPL 247
GL + + ITVST G+ I F ++ +NLA+SLHAP ++R IM + + +
Sbjct: 183 DKGLA--IGARHITVSTSGLAPRIIDFANEDFQVNLAISLHAPNNELRMSIMRINKTYSI 240
Query: 248 EKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQ--VVVNLIPFNPIG 305
EKLM A+ Y + ++I EYIML GVND ++ A +L LL + VNLIP+NP+
Sbjct: 241 EKLMEAIHYYVNKTNRRITFEYIMLKGVNDHKKEALELAALLGEHRHLAYVNLIPYNPVD 300
Query: 306 SVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 350
+ S+ + V +F L+ + I +R++ G DI ACGQL
Sbjct: 301 EHIDYERSTKEDVLAFYDTLKKN-GINCVIRREHGTDIDAACGQL 344
>gi|422876982|ref|ZP_16923452.1| cfr family radical SAM enzyme [Streptococcus sanguinis SK1056]
gi|332361790|gb|EGJ39594.1| cfr family radical SAM enzyme [Streptococcus sanguinis SK1056]
Length = 362
Score = 199 bits (505), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 119/349 (34%), Positives = 191/349 (54%), Gaps = 34/349 (9%)
Query: 19 EKAGIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKF--KPLTSTLHSVVDSSD 76
E G K+ IW+++ ++E +L + L +F PL +V S
Sbjct: 18 EDQGEKKFRAAQIWEWLYRKRVQSFEEMTNLSKDLIATLNDQFVVNPLK---QRIVQESA 74
Query: 77 DVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCAT 136
D T K L +L +G +E V+MR L ++C+++QVGC +GC FCA+
Sbjct: 75 DGTVKYLFELPDGMLIETVLMRQHYGL--------------SVCVTTQVGCNIGCTFCAS 120
Query: 137 GTMGFKSNLSSGEIVEQLVHASRLSNIR-------NVVFMGMGEPLNNYAALVEAVRIMT 189
G + + +L++GEIV Q++ + + R ++V MG+GEP +NY +++ VR +
Sbjct: 121 GLIKKQRDLNNGEIVAQIMLVQKYFDERGQDERVSHIVVMGIGEPFDNYDNVLKFVRTVN 180
Query: 190 ---GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFP 246
GL + + ITVST G+ H I F ++ +NLAVSLHAP D+R IM R+FP
Sbjct: 181 DDKGLA--IGARHITVSTSGLAHKIRDFANEGVQVNLAVSLHAPNNDLRTSIMRINRSFP 238
Query: 247 LEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVV--VNLIPFNPI 304
+EKL A++ Y + + +++ EYIML+ VND + A +L +LL+ + + VNLIP+NP+
Sbjct: 239 IEKLFAAIEYYIETTNRRVTFEYIMLNEVNDGVEQAKELAELLKNIKKLSYVNLIPYNPV 298
Query: 305 GSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVN 353
Q+ S ++V +F L+ + + VR++ G DI ACGQL N
Sbjct: 299 SEHDQYSRSPKERVMAFYDTLKKN-GVNCVVRQEHGTDIDAACGQLRSN 346
>gi|123257976|sp|Q1JG02.1|RLMN_STRPD RecName: Full=Probable dual-specificity RNA methyltransferase RlmN;
AltName: Full=23S rRNA
(adenine(2503)-C(2))-methyltransferase; AltName:
Full=23S rRNA m2A2503 methyltransferase; AltName:
Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=tRNA (adenine(37)-C(2))-methyltransferase;
AltName: Full=tRNA m2A37 methyltransferase
gi|94544294|gb|ABF34342.1| Radical SAM family enzyme [Streptococcus pyogenes MGAS10270]
Length = 359
Score = 199 bits (505), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 120/343 (34%), Positives = 191/343 (55%), Gaps = 34/343 (9%)
Query: 22 GIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKF--KPLTSTLHSVVDSSDDVT 79
G KQ IW ++ + ++E ++ S+L F PL VV S D T
Sbjct: 21 GQKQFRATQIWDWLYKKRVQSFEEMTNISKDFVSILNDSFCVNPLK---QRVVQESADGT 77
Query: 80 TKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTM 139
K L +L +G +E V+MR ++ G ++C+++QVGC +GC FCA+G +
Sbjct: 78 VKYLFELPDGMLIETVLMR------QHYG--------HSVCVTTQVGCNIGCTFCASGLI 123
Query: 140 GFKSNLSSGEIVEQLVHASRLSNIR-------NVVFMGMGEPLNNYAALVEAVRIMT--- 189
+ +L+SGEI Q++ + + R +VV MG+GEP +NY ++ +R++
Sbjct: 124 KKQRDLNSGEITAQIMLVQKYFDDRKQGERVSHVVVMGIGEPFDNYKNVMCFLRVINDDN 183
Query: 190 GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEK 249
GL + + ITVST G+ H I F ++ +NLAVSLHAP D+R IM R+FPLEK
Sbjct: 184 GLA--IGARHITVSTSGLAHKIRDFANEGVQVNLAVSLHAPNNDLRSSIMRVNRSFPLEK 241
Query: 250 LMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVV--VNLIPFNPIGSV 307
L +A++ Y + + +++ EYIML+ VND + A +L L +T + + VNLIP+NP+
Sbjct: 242 LFSAIEYYIEKTNRRVTFEYIMLNEVNDSIKQAQELADLTKTIRKLSYVNLIPYNPVSEH 301
Query: 308 SQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 350
Q+ S ++V +F +L+ + + VR++ G DI ACGQL
Sbjct: 302 DQYSRSPKERVLAFYDVLKKN-GVNCVVRQEHGTDIDAACGQL 343
>gi|289578505|ref|YP_003477132.1| radical SAM enzyme, Cfr family [Thermoanaerobacter italicus Ab9]
gi|289528218|gb|ADD02570.1| radical SAM enzyme, Cfr family [Thermoanaerobacter italicus Ab9]
Length = 342
Score = 199 bits (505), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 117/340 (34%), Positives = 194/340 (57%), Gaps = 28/340 (8%)
Query: 18 FEKAGIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHSVVD---- 73
F G ++ I+K++ ++D+ + LRSK K + V+
Sbjct: 16 FVNIGESRYRAKQIYKWIYGKKITDFDKMTDISKN----LRSKLKEIAYISQLKVEARRV 71
Query: 74 SSDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNF 133
S D T K L L++ +E V ++Y R G +T C+S+QVGC M C+F
Sbjct: 72 SEIDNTVKYLFLLEDKNIIEGVAIKY-----------RFG---NTACVSTQVGCNMRCSF 117
Query: 134 CATGTMGFKSNLSSGEIVEQLVHA-SRLSNIRNVVFMGMGEPLNNYAALVEAVRIMTGLP 192
CA+ G +L + E+V+Q++ S I N+V MG GEP +NY +++ ++I+ P
Sbjct: 118 CASAIGGKVRDLKASEMVDQVMSIDSDYGKISNIVLMGSGEPFDNYDEVMKFIKIVNN-P 176
Query: 193 FQ--VSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKL 250
+ + + IT+ST GI+ I +F + +NL++SLHAP ++R Q+MP +A+PLE+L
Sbjct: 177 YGLGIGSRHITISTCGIIPKIYQFADEKLQVNLSISLHAPNDELRTQLMPINKAYPLEEL 236
Query: 251 MNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQF 310
M A K Y + ++++I EY +++GVND+++HA+QL LL+ VNLIP N + + F
Sbjct: 237 MKACKYYIEKTRRRITFEYSLIEGVNDKKEHAYQLVDLLKGMLCHVNLIPINYVKEIG-F 295
Query: 311 RTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 350
+ ++++KV F+KI+ + I TVR+++G DI ACGQL
Sbjct: 296 KKAANEKVMMFKKIIENA-GISCTVRRELGSDIEAACGQL 334
>gi|308173538|ref|YP_003920243.1| Fe-S-cluster AdoMet radical enzyme [Bacillus amyloliquefaciens DSM
7]
gi|307606402|emb|CBI42773.1| putative Fe-S-cluster AdoMet radical enzyme [Bacillus
amyloliquefaciens DSM 7]
Length = 363
Score = 199 bits (505), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 113/328 (34%), Positives = 185/328 (56%), Gaps = 27/328 (8%)
Query: 31 IWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHSVVDSSDDVTTKLLVKLQNGG 90
I++++ E +DE +L + L S F +T+ +V +S D T K L +L +G
Sbjct: 45 IFEWLYEKRVSSFDEMTNLSKSLREKLESNF-VMTTMKTAVKQTSQDGTMKFLFELHDGY 103
Query: 91 FVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEI 150
+E V+MR++ +++C+++QVGC++GC FCA+ G K NL +GEI
Sbjct: 104 TIETVLMRHEYG--------------NSVCVTTQVGCRIGCTFCASTLGGLKRNLEAGEI 149
Query: 151 VEQLVHASRL-----SNIRNVVFMGMGEPLNNYAALVEAVRIMT---GLPFQVSPKRITV 202
V Q+V + + +VV MG+GEP +N+ ++ ++I+ GL + + ITV
Sbjct: 150 VAQVVKVQKALDETDERVSSVVIMGIGEPFDNFNEMLAFLKIINHDKGL--NIGARHITV 207
Query: 203 STVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQ 262
ST GI+ I F +N A+SLHAP ++R ++MP +A+ L LM A+K Y + +
Sbjct: 208 STSGIIPKIYDFADQKMQINFAISLHAPNTEIRSRLMPINKAYKLPDLMEAVKYYIEKTG 267
Query: 263 QKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQ 322
++I EY + GVND+ +HA +L +LL+ + VNLIP N + RT D++ +F+
Sbjct: 268 RRISFEYGLFGGVNDQVEHAEELAELLKGVKCHVNLIPVNYVPERDYVRTPR-DQIFAFE 326
Query: 323 KILRGSYNIRTTVRKQMGQDISGACGQL 350
K L+ S + T+R++ G DI ACGQL
Sbjct: 327 KTLK-SRGVNVTIRREQGHDIDAACGQL 353
>gi|227824650|ref|ZP_03989482.1| ribosomal RNA large subunit methyltransferase N [Acidaminococcus
sp. D21]
gi|352683752|ref|YP_004895736.1| ribosomal RNA large subunit methyltransferase N [Acidaminococcus
intestini RyC-MR95]
gi|226905149|gb|EEH91067.1| ribosomal RNA large subunit methyltransferase N [Acidaminococcus
sp. D21]
gi|350278406|gb|AEQ21596.1| ribosomal RNA large subunit methyltransferase N [Acidaminococcus
intestini RyC-MR95]
Length = 352
Score = 199 bits (505), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 118/345 (34%), Positives = 186/345 (53%), Gaps = 24/345 (6%)
Query: 14 IRAEFEKAGIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLH--SV 71
++ EF G+K+ +++++ E ++E +L SLL + L+ +
Sbjct: 14 MQDEFLALGLKKFRAEQVFRWIYEKGATTFEEMTNLSKENRSLLEGTYSILSGAVKVLRT 73
Query: 72 VDSSDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGC 131
DS+D +T K+L+ L +G VE V+M +D + C+SSQVGC M C
Sbjct: 74 YDSADRLTHKVLLGLSDGASVETVLMHHDYGY--------------SACLSSQVGCAMNC 119
Query: 132 NFCATGTMGFKSNLSSGEIVEQLVHASRL-----SNIRNVVFMGMGEPLNNYAALVEAVR 186
FCA+G GF NL++GEI+ QL + + + +V MG GEP+ N ++ A+
Sbjct: 120 TFCASGLHGFMRNLTAGEILAQLYYFDHVLLPKGERVSRIVIMGSGEPMLNLDNVLAALD 179
Query: 187 IMTGLPFQ-VSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAF 245
+M Q +S + +T+ST GIV I + +NLAVSLHA +R ++MP +
Sbjct: 180 LMHHDKGQCISYRNMTISTCGIVPGIEEMTRQGRTINLAVSLHAATGALRDRLMPINGKY 239
Query: 246 PLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIG 305
P ++++A Y+K + +++ EYI+L G+ND E+ A L + L + VVNLIP NP+
Sbjct: 240 PFPEVIDAASRYEKMNGRQVMYEYILLAGINDREEDARALAEALSGKECVVNLIPANPVP 299
Query: 306 SVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 350
FR D V F + L+ + I TVRK+MG+DI+ ACGQL
Sbjct: 300 E-KGFRRPEDRDVDRFFQYLKKRH-INVTVRKEMGKDINAACGQL 342
>gi|90021078|ref|YP_526905.1| Crp/FNR family transcriptional regulator [Saccharophagus degradans
2-40]
gi|123090598|sp|Q21KT6.1|RLMN_SACD2 RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|89950678|gb|ABD80693.1| transcriptional regulator, Crp/Fnr family [Saccharophagus degradans
2-40]
Length = 398
Score = 199 bits (505), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 118/319 (36%), Positives = 181/319 (56%), Gaps = 40/319 (12%)
Query: 62 KPLTSTLHSVVDS----------SDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPR 111
KPL L V ++ S D T K L+++ G VE V +
Sbjct: 59 KPLRDKLSQVAEAVAPEVVNQWDSSDGTRKFLIRVGGGNAVETVYI-------------- 104
Query: 112 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN--------- 162
P G R TLC+SSQVGC + C+FCATG GF +L++ EI+ Q+ A++ N
Sbjct: 105 PDGDRGTLCVSSQVGCSLDCSFCATGKQGFNRDLTAAEIIGQVWQAAKSFNQFGVGAQRK 164
Query: 163 IRNVVFMGMGEPLNNYAALVEAVRIMT-GLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 221
I NVV MGMGEPL N+ +V+++ +M + +S +R+T+ST G+V A++K +
Sbjct: 165 ITNVVMMGMGEPLLNFDNVVDSMNLMMHDNCYGLSKRRVTLSTSGVVPALDKL-GEYTDA 223
Query: 222 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQK---NSQQKIFIEYIMLDGVNDE 278
LA+SLHAP +R +++P + +P+E L+ + K Y + ++K+ IEY ++D VND
Sbjct: 224 CLAISLHAPNNALRNELVPINKKYPIEMLLASAKRYIDGLPDVRRKMTIEYTLIDQVNDR 283
Query: 279 EQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQ 338
+HAH+L +LL+ V +NLIPFNP ++S ++ S++ + FQ+IL + TTVR
Sbjct: 284 PEHAHELAELLKDIPVKINLIPFNPF-NLSNYKRVSNNALRRFQQILIDA-GYTTTVRTT 341
Query: 339 MGQDISGACGQLVVNLPDK 357
G DI ACGQL + D+
Sbjct: 342 RGDDIDAACGQLAGQVNDR 360
>gi|406038656|ref|ZP_11046011.1| hypothetical protein AursD1_02268 [Acinetobacter ursingii DSM 16037
= CIP 107286]
Length = 408
Score = 199 bits (505), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 130/372 (34%), Positives = 210/372 (56%), Gaps = 43/372 (11%)
Query: 12 GIIRAE----FEKAGIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTS- 66
G+ RAE FE+ G K+ + K++ + ++ E ++ LR+K + +
Sbjct: 32 GMSRAELEGFFEQLGEKKFRAGQVMKWIHQYFVTDFAEMTNISGK----LRAKLEQVCEI 87
Query: 67 TLHSVVDS--SDDVTTKLLVKLQNGG--FVEAVIMRYDSSLGKYNGKPRPGGPRSTLCIS 122
T VV S D T K + ++ +G VE V++ + G R TLCIS
Sbjct: 88 TAPEVVHRHYSKDGTRKWVFRVGDGAGSLVETVLIPAEDKTGS----------RKTLCIS 137
Query: 123 SQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHAS-----------RLSNIRNVVFMGM 171
SQVGC + C+FC+TG GF+ +L+ EI+ QL A+ R ++ NVV MGM
Sbjct: 138 SQVGCALDCSFCSTGKQGFQRDLNPDEIIGQLWVANQSYMEDVPVAERERSVTNVVMMGM 197
Query: 172 GEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAP 230
GEPL NY A++ ++++M + +S +R+T+ST G+V I++ D+ + LA+SLHAP
Sbjct: 198 GEPLLNYDAVLSSMQLMLDDFAYGMSKRRVTLSTSGVVPKIDQLAQDI-DVALAISLHAP 256
Query: 231 VQDVRCQIMPAARAFPLEKLMNALKEY-----QKNSQQKIFIEYIMLDGVNDEEQHAHQL 285
++R +++P + +PLE+L+ A + Y +++++ + IEY+MLDGVND +HA Q+
Sbjct: 257 NDELRNELVPINKKYPLEQLIAACQRYLAKGGNESTRKHVTIEYVMLDGVNDHPEHAQQM 316
Query: 286 GKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISG 345
KLL+ +NLIPFNP R SS +++ +FQK L + + T+R+ G DI
Sbjct: 317 IKLLKNLPSKINLIPFNPFPHAPYGR-SSRNRIIAFQKTLSDAGFV-CTIRQTRGDDIDA 374
Query: 346 ACGQLVVNLPDK 357
ACGQLV ++ D+
Sbjct: 375 ACGQLVGHVADR 386
>gi|424862911|ref|ZP_18286824.1| radical SAM enzyme, Cfr family [SAR86 cluster bacterium SAR86A]
gi|400757532|gb|EJP71743.1| radical SAM enzyme, Cfr family [SAR86 cluster bacterium SAR86A]
Length = 359
Score = 199 bits (505), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 121/294 (41%), Positives = 172/294 (58%), Gaps = 24/294 (8%)
Query: 75 SDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFC 134
S++ T K L+KL +G +E VI+ P G R TLCISSQ GC + C FC
Sbjct: 75 SNEGTKKYLLKLDSGSMIEMVII--------------PEGKRRTLCISSQAGCALACTFC 120
Query: 135 ATGTMGFKSNLSSGEIVEQLVHA--SRLSN--IRNVVFMGMGEPLNNYAALVEAVRIMTG 190
ATG GF NL+S EI+ QL A ++ +N I NVVFMGMGEPL N+ A++E+ +IM
Sbjct: 121 ATGAQGFDQNLNSSEIIGQLWLANFNKKNNKLITNVVFMGMGEPLLNFDAVIESAKIMKD 180
Query: 191 -LPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEK 249
L + +S KRIT+ST GIV I K ++ + ++LA+SLHA +R +I+P + +P+EK
Sbjct: 181 QLGYGLSRKRITISTAGIVPNIKKLNNYVD-VSLAISLHASNDVLRDEIVPINKKYPIEK 239
Query: 250 LMNALKEY--QKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSV 307
L+NA ++Y ++N ++ + IEYI++ VND + A L KLL +NLIPFN
Sbjct: 240 LLNACQDYLGKENKRKHVTIEYILIKNVNDSLEDAKGLVKLLSKLPCKINLIPFNSFNG- 298
Query: 308 SQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDKISAK 361
S + + ++ F+ L I T+R G + ACGQLV NL I K
Sbjct: 299 SNYERPCNKTINDFKSFLINKGFI-ATLRTTRGDGVDAACGQLVGNLTKSIKGK 351
>gi|336451639|ref|ZP_08622076.1| methyltransferase [Idiomarina sp. A28L]
gi|336281452|gb|EGN74732.1| methyltransferase [Idiomarina sp. A28L]
Length = 378
Score = 199 bits (505), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 126/362 (34%), Positives = 193/362 (53%), Gaps = 39/362 (10%)
Query: 17 EFEKAGIKQHFIPLIWKYVIENPNCEW------DEFPSLPSAAYSLLRSKFKPLTSTLH- 69
+ + GI+Q F L K + +W D+F ++ + L R K K +
Sbjct: 12 DLNREGIRQFFAELGEKPFRADQVMKWIYHYCIDDFDNMTNLNKPL-REKLKQIAEIKAP 70
Query: 70 --SVVDSSDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGC 127
V S D T K ++L +G VE+V + P R+TLC+SSQVGC
Sbjct: 71 EIKVQKESIDGTIKFAMELSDGQEVESVWI--------------PEADRATLCVSSQVGC 116
Query: 128 KMGCNFCATGTMGFKSNLSSGEIVEQLVHASRL---------SNIRNVVFMGMGEPLNNY 178
+ C FC+TG GF NL EI+ Q+ ++L + NVV MGMGEPL N
Sbjct: 117 ALECTFCSTGQQGFNRNLKVSEIIGQVWRVNKLLGSYGDTGVKPVTNVVMMGMGEPLLNM 176
Query: 179 AALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQ 237
LV A+++M + +S +RITVST G+V A+++ + + LA+SLHAP +R +
Sbjct: 177 KNLVPALQLMLEDFGYGLSKRRITVSTSGVVPALDQLREQV-DVALAISLHAPNNKLRDE 235
Query: 238 IMPAARAFPLEKLMNALKEYQKNS--QQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVV 295
I+P + +P+ + + A + Y + S Q K+ +EY+M+D +ND +HAH+L ++L+
Sbjct: 236 IVPINKKYPIAEFLAASRRYVEASKAQTKVTVEYVMIDHINDSTEHAHELAEVLKDTPSK 295
Query: 296 VNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLP 355
+NLIPFNP S++ SS+ ++ F K+L Y VRK G DI ACGQLV ++
Sbjct: 296 INLIPFNPFPG-SEYGRSSNSRIDRFSKVLM-DYGYTVIVRKTRGDDIDAACGQLVGDVV 353
Query: 356 DK 357
D+
Sbjct: 354 DR 355
>gi|332300071|ref|YP_004441992.1| ribosomal RNA large subunit methyltransferase N [Porphyromonas
asaccharolytica DSM 20707]
gi|332177134|gb|AEE12824.1| Ribosomal RNA large subunit methyltransferase N [Porphyromonas
asaccharolytica DSM 20707]
Length = 341
Score = 199 bits (505), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 119/311 (38%), Positives = 172/311 (55%), Gaps = 24/311 (7%)
Query: 43 WDEFPSLPSAAYSLLRSKFKPLTSTLHSVVDSSDDVTTKLLVKLQNGGFVEAVIMRYDSS 102
WDE +L A +LL S ++ + H + +S D T K L GGFVE V++
Sbjct: 44 WDEMTNLSKKARALLASHYEIGRAAPH-LQQTSRDGTVKYLFA-AGGGFVETVMI----- 96
Query: 103 LGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN 162
P G R+TLC+SSQ GCKM C FC TG GF +NLS+ EI+ Q++ ++
Sbjct: 97 ---------PEGDRATLCVSSQRGCKMNCLFCMTGKQGFGANLSASEILNQILSVPEVNE 147
Query: 163 IRNVVFMGMGEPLNNYAALVEAVRIMT---GLPFQVSPKRITVSTVGIVHAINKFHSDLP 219
+ N+VFMGMGEP++N L++ +R +T GL +SPKRITVST+G+ + +F +
Sbjct: 148 LTNIVFMGMGEPMDNIDTLLQVIRCLTDPKGLA--MSPKRITVSTIGLRPGLERFLEECT 205
Query: 220 GLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEE 279
+LA+SLH P+ + R IMP RA PL + L+ Y + Q+++ EYI+ G+ND
Sbjct: 206 -CHLAISLHNPLPEERLAIMPVERAMPLADTVALLRHYDWSRQRRLTFEYIVFSGLNDTP 264
Query: 280 QHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQM 339
+H L +LL VNLI ++ I + SSD + + I TT+R
Sbjct: 265 RHLAALKRLLSQLDCHVNLIRYHRIPHIDL--PSSDMTRMEWLRDRLCEAGIPTTIRTSR 322
Query: 340 GQDISGACGQL 350
G+DIS ACG L
Sbjct: 323 GEDISAACGML 333
>gi|323352763|ref|ZP_08087733.1| cfr family radical SAM enzyme [Streptococcus sanguinis VMC66]
gi|322121799|gb|EFX93545.1| cfr family radical SAM enzyme [Streptococcus sanguinis VMC66]
Length = 362
Score = 199 bits (505), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 119/349 (34%), Positives = 191/349 (54%), Gaps = 34/349 (9%)
Query: 19 EKAGIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKF--KPLTSTLHSVVDSSD 76
E G K+ IW+++ ++E +L + L +F PL +V S
Sbjct: 18 EAQGEKKFRASQIWEWLYRKRVQSFEEMTNLSKDLIARLNDQFVVNPLK---QRIVQESA 74
Query: 77 DVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCAT 136
D T K L +L +G +E V+MR L ++C+++QVGC +GC FCA+
Sbjct: 75 DGTVKYLFELPDGMLIETVLMRQHYGL--------------SVCVTTQVGCNIGCTFCAS 120
Query: 137 GTMGFKSNLSSGEIVEQLVHASRLSNIR-------NVVFMGMGEPLNNYAALVEAVRIMT 189
G + + +L++GEIV Q++ + + R ++V MG+GEP +NY +++ VR +
Sbjct: 121 GLIKKQRDLNNGEIVAQIMLVQKYFDERGQDERVSHIVVMGIGEPFDNYDNVLKFVRTVN 180
Query: 190 ---GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFP 246
GL + + ITVST G+ H I F ++ +NLAVSLHAP D+R IM R+FP
Sbjct: 181 DDKGLA--IGARHITVSTSGLAHKIRDFANEGVQVNLAVSLHAPNNDLRTSIMRINRSFP 238
Query: 247 LEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVV--VNLIPFNPI 304
+EKL A++ Y + + +++ EYIML+ VND + A +L +LL+ + + VNLIP+NP+
Sbjct: 239 IEKLFAAIEYYIETTNRRVTFEYIMLNEVNDGVEQAKELAELLKNIKKLSYVNLIPYNPV 298
Query: 305 GSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVN 353
Q+ S ++V +F L+ + + VR++ G DI ACGQL N
Sbjct: 299 SEHDQYSRSPKERVMAFYDTLKKT-GVNCVVRQEHGTDIDAACGQLRSN 346
>gi|47094708|ref|ZP_00232323.1| conserved hypothetical protein TIGR00048 [Listeria monocytogenes
str. 1/2a F6854]
gi|254911154|ref|ZP_05261166.1| conserved hypothetical protein [Listeria monocytogenes J2818]
gi|254935482|ref|ZP_05267179.1| 23S rRNA methyltransferase [Listeria monocytogenes F6900]
gi|255026212|ref|ZP_05298198.1| hypothetical protein LmonocytFSL_07400 [Listeria monocytogenes FSL
J2-003]
gi|386046133|ref|YP_005964465.1| cfr family radical SAM enzyme [Listeria monocytogenes J0161]
gi|386052736|ref|YP_005970294.1| cfr family radical SAM enzyme [Listeria monocytogenes Finland 1998]
gi|47016848|gb|EAL07766.1| conserved hypothetical protein TIGR00048 [Listeria monocytogenes
str. 1/2a F6854]
gi|258608058|gb|EEW20666.1| 23S rRNA methyltransferase [Listeria monocytogenes F6900]
gi|293589079|gb|EFF97413.1| conserved hypothetical protein [Listeria monocytogenes J2818]
gi|345533124|gb|AEO02565.1| cfr family radical SAM enzyme [Listeria monocytogenes J0161]
gi|346645387|gb|AEO38012.1| cfr family radical SAM enzyme [Listeria monocytogenes Finland 1998]
Length = 367
Score = 199 bits (505), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 116/345 (33%), Positives = 186/345 (53%), Gaps = 30/345 (8%)
Query: 18 FEKAGIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHSVVDSSDD 77
E G K+ +W ++ ++E ++P LL + F + + VV S D
Sbjct: 18 LEAHGQKKFRATQVWDWLYRKRVKTFEEMSNVPKETIELLTANF-VMNTLEEQVVQESAD 76
Query: 78 VTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATG 137
TTK L KL +G +E V+M+ + L ++C+++QVGC +GC FCA+G
Sbjct: 77 GTTKYLFKLSDGNLIETVMMKQEYGL--------------SVCVTTQVGCNIGCTFCASG 122
Query: 138 TMGFKSNLSSGEIVEQLVHASRLSNIRN-------VVFMGMGEPLNNYAALVEAVRIMT- 189
+ +L++GEIVEQ+++ + RN VV MG+GEP +NY +++ +R++
Sbjct: 123 LLKKSRDLTAGEIVEQIMNVQHYLDGRNLEERVSHVVVMGIGEPFDNYDNVMDFLRVINH 182
Query: 190 --GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPL 247
GL + + ITVST G+ I F ++ +NLA+SLHAP ++R IM + + +
Sbjct: 183 DKGLA--IGARHITVSTSGLAPRIIDFANEDFQVNLAISLHAPNNELRTSIMRINKTYSI 240
Query: 248 EKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQ--VVVNLIPFNPIG 305
EKLM A+ Y + ++I EYIML GVND ++ A +L LL + VNLIP+NP+
Sbjct: 241 EKLMEAIHYYVNKTNRRITFEYIMLKGVNDHKKEALELAALLGEHRHLAYVNLIPYNPVD 300
Query: 306 SVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 350
+ S+ + V +F L+ + I +R++ G DI ACGQL
Sbjct: 301 EHIDYERSTKEDVLAFYDTLKKN-GINCVIRREHGTDIDAACGQL 344
>gi|223043733|ref|ZP_03613776.1| radical SAM enzyme, Cfr family [Staphylococcus capitis SK14]
gi|417907096|ref|ZP_12550872.1| 23S rRNA m2A2503 methyltransferase [Staphylococcus capitis VCU116]
gi|222442830|gb|EEE48932.1| radical SAM enzyme, Cfr family [Staphylococcus capitis SK14]
gi|341596727|gb|EGS39318.1| 23S rRNA m2A2503 methyltransferase [Staphylococcus capitis VCU116]
Length = 364
Score = 199 bits (505), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 109/313 (34%), Positives = 172/313 (54%), Gaps = 23/313 (7%)
Query: 44 DEFPSLPSAAYSLLRSKFKPLTSTLHSVVDSSDDVTTKLLVKLQNGGFVEAVIMRYDSSL 103
DE +L +L+ F +T+ V S D T K L +LQ+G +E V+MR++
Sbjct: 59 DEMTNLSKDLRQVLKDNF-AMTTLTTVVKQESKDGTIKFLFELQDGYTIETVLMRHEYG- 116
Query: 104 GKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRL--- 160
+++C+++QVGC++GC FCA+ G K NL +GEIV Q++ +
Sbjct: 117 -------------NSVCVTTQVGCRIGCTFCASTLGGLKRNLEAGEIVSQVLTVQKALDE 163
Query: 161 --SNIRNVVFMGMGEPLNNYAALVEAVRIMTGL-PFQVSPKRITVSTVGIVHAINKFHSD 217
+ +V MG+GEP NY +++ +RI+ + + ITVST GI+ I F +
Sbjct: 164 TDERVSQIVIMGIGEPFENYDEMMDFLRIVNDDNSLNIGARHITVSTSGIIPRIYDFAEE 223
Query: 218 LPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVND 277
+N AVSLH ++R ++MP RA+ +EKLM A+K YQ+ + +++ EY + GVND
Sbjct: 224 DIQINFAVSLHGAKDEIRSRLMPINRAYNVEKLMEAIKYYQEQTNRRVTFEYGLFGGVND 283
Query: 278 EEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRK 337
+ +HA L L++ VNLIP N + + +T DD + F+K L+ I T+R+
Sbjct: 284 QLEHARDLAHLIKNLNCHVNLIPVNHVPERNYVKTPKDD-IFKFEKELK-RLGINATIRR 341
Query: 338 QMGQDISGACGQL 350
+ G DI ACGQL
Sbjct: 342 EQGSDIDAACGQL 354
>gi|339627429|ref|YP_004719072.1| radical SAM enzyme, Cfr family [Sulfobacillus acidophilus TPY]
gi|379008195|ref|YP_005257646.1| 23S rRNA m(2)A-2503 methyltransferase [Sulfobacillus acidophilus
DSM 10332]
gi|339285218|gb|AEJ39329.1| radical SAM enzyme, Cfr family [Sulfobacillus acidophilus TPY]
gi|361054457|gb|AEW05974.1| 23S rRNA m(2)A-2503 methyltransferase [Sulfobacillus acidophilus
DSM 10332]
Length = 353
Score = 199 bits (505), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 109/294 (37%), Positives = 176/294 (59%), Gaps = 22/294 (7%)
Query: 72 VDSSDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGC 131
++++D TTKLL++L + VE VI+ +D +LCISSQVGC MGC
Sbjct: 75 AEAAEDGTTKLLLELADRQRVETVILPHDYG--------------HSLCISSQVGCAMGC 120
Query: 132 NFCATGTMGFKSNLSSGEIVEQLVHASRL-----SNIRNVVFMGMGEPLNNYAALVEAVR 186
+FCA+G G LS+GE+++Q+ +A+R + + + MG+GEPL+NY ++ +
Sbjct: 121 HFCASGLKGRIRQLSAGEMLDQVAYANRWLKPQGAQVTRIDIMGIGEPLDNYPNVIRFLH 180
Query: 187 IMTG-LPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAF 245
++ L + + ITVST G+V I + + + LAVSLHAP +R Q+MP RA+
Sbjct: 181 LVHDPLAMGLGYRHITVSTSGVVPKIYQLADEGLPVTLAVSLHAPTDALRSQLMPVNRAY 240
Query: 246 PLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIG 305
P+ KLM+A + Y + + ++I EY++L G+ND ++ A +L +L+ F VNLIP+NP+
Sbjct: 241 PIRKLMDACRYYVERTGRRITFEYLLLRGINDHDELAVKLAELVRGFPSHVNLIPWNPVD 300
Query: 306 SVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDKIS 359
F S +V FQ I++ + I T+R+++GQ+I ACGQL + + +S
Sbjct: 301 E-HPFLPSPSAQVRRFQHIVQDA-GISCTIRRELGQEIDAACGQLRLREEEPVS 352
>gi|329120380|ref|ZP_08249047.1| cfr family radical SAM enzyme [Neisseria bacilliformis ATCC
BAA-1200]
gi|327462335|gb|EGF08661.1| cfr family radical SAM enzyme [Neisseria bacilliformis ATCC
BAA-1200]
Length = 362
Score = 199 bits (505), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 122/294 (41%), Positives = 165/294 (56%), Gaps = 27/294 (9%)
Query: 74 SSDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNF 133
S D T K L+ + G VE V + P R TLCISSQVGC + C F
Sbjct: 72 ESRDGTRKWLLDVGTGNGVETVFI--------------PESERGTLCISSQVGCALECTF 117
Query: 134 CATGTMGFKSNLSSGEIVEQLVHASRLSN--------IRNVVFMGMGEPLNNYAALVEAV 185
C+TG GF NL++ EIV QL A++ I NVV MGMGEPL NY +V ++
Sbjct: 118 CSTGRQGFNRNLTTAEIVGQLWWANKALGATPKDERVISNVVMMGMGEPLANYDNVVRSL 177
Query: 186 RIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARA 244
+M + +S +R+TVST G+V +++ D+P + LAVSLHA VR QI+P +
Sbjct: 178 SVMLDDHGYGLSRRRVTVSTSGMVPQMDRLKEDMP-VALAVSLHASNDHVRDQIVPLNKK 236
Query: 245 FPLEKLMNALKEYQ-KNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNP 303
+PL+ LM A + Y K + + EY+MLDGVND+ +HA +L KL+E NLIPFNP
Sbjct: 237 YPLKDLMAACRRYLVKAPRDFVTFEYVMLDGVNDKAEHARELLKLVEDVPCKFNLIPFNP 296
Query: 304 IGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDK 357
S + SS + + F+ IL+ + + TVRK G DI ACGQL + DK
Sbjct: 297 FPH-SGYERSSAENIRIFRDILQQAGFV-VTVRKTRGDDIDAACGQLAGQVKDK 348
>gi|163848485|ref|YP_001636529.1| ribosomal RNA large subunit methyltransferase N [Chloroflexus
aurantiacus J-10-fl]
gi|222526414|ref|YP_002570885.1| ribosomal RNA large subunit methyltransferase N [Chloroflexus sp.
Y-400-fl]
gi|205829697|sp|A9WFY6.1|RLMN_CHLAA RecName: Full=Probable dual-specificity RNA methyltransferase RlmN;
AltName: Full=23S rRNA
(adenine(2503)-C(2))-methyltransferase; AltName:
Full=23S rRNA m2A2503 methyltransferase; AltName:
Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=tRNA (adenine(37)-C(2))-methyltransferase;
AltName: Full=tRNA m2A37 methyltransferase
gi|163669774|gb|ABY36140.1| radical SAM enzyme, Cfr family [Chloroflexus aurantiacus J-10-fl]
gi|222450293|gb|ACM54559.1| radical SAM enzyme, Cfr family [Chloroflexus sp. Y-400-fl]
Length = 376
Score = 199 bits (505), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 125/340 (36%), Positives = 183/340 (53%), Gaps = 40/340 (11%)
Query: 31 IWKYVIENPNCEWDEFPSLPSAAYSLLRSKFK--PLTSTLHSVVDSSDD-VTTKLLVKLQ 87
+++++ N + D+ LP A LRS+ P ++ V D+ +T K L +L
Sbjct: 35 LYRHLYVNLARQVDQMTDLPLA----LRSRLAEIPFSTLRCEQVQIGDNGMTRKALFRLP 90
Query: 88 NGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSS 147
+G VE V+M Y RST+C+S+Q GC MGC FCATG +G NLSS
Sbjct: 91 DGAVVETVLMVYPD--------------RSTVCVSTQAGCGMGCVFCATGQLGLLRNLSS 136
Query: 148 GEIVEQLVHASR----------LSNIRNVVFMGMGEPLNNYAALVEAV-RIMTGLPFQVS 196
GEIV Q + AS+ + N+VFMGMGEP NY +AV R+ F +
Sbjct: 137 GEIVAQAIWASQELRAMGMAGPTGRVSNLVFMGMGEPFANYDRWWQAVERLHDPQGFNLG 196
Query: 197 PKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKE 256
+ +TVSTVG+V I + ++ +NLA+SLHAP +R ++MP R +P+ LM A +
Sbjct: 197 ARSMTVSTVGLVKGIERLANERLPINLAISLHAPDDALRSELMPVNRRYPIADLMAATRN 256
Query: 257 YQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLE------TFQVVVNLIPFNPIGSVSQF 310
Y +++++ EY++L G ND A L +LL VNLIP+NP+
Sbjct: 257 YIAKTRRRVSFEYVLLQGKNDHPHQAIALARLLRHSAPRGPLLFHVNLIPWNPVPGTPLG 316
Query: 311 RTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 350
R S ++V++FQ+IL Y I TVR + G +I+ ACGQL
Sbjct: 317 R-SEWERVTTFQQIL-TDYGIPCTVRVERGVEIAAACGQL 354
>gi|251782933|ref|YP_002997236.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
dysgalactiae subsp. equisimilis GGS_124]
gi|386317449|ref|YP_006013613.1| radical SAM superfamily protein [Streptococcus dysgalactiae subsp.
equisimilis ATCC 12394]
gi|410495338|ref|YP_006905184.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
dysgalactiae subsp. equisimilis AC-2713]
gi|417753581|ref|ZP_12401692.1| 23S rRNA m2A2503 methyltransferase [Streptococcus dysgalactiae
subsp. equisimilis SK1249]
gi|417928723|ref|ZP_12572111.1| 23S rRNA m2A2503 methyltransferase [Streptococcus dysgalactiae
subsp. equisimilis SK1250]
gi|242391563|dbj|BAH82022.1| radical SAM family enzyme [Streptococcus dysgalactiae subsp.
equisimilis GGS_124]
gi|323127736|gb|ADX25033.1| radical SAM superfamily protein [Streptococcus dysgalactiae subsp.
equisimilis ATCC 12394]
gi|333769544|gb|EGL46656.1| 23S rRNA m2A2503 methyltransferase [Streptococcus dysgalactiae
subsp. equisimilis SK1249]
gi|340766597|gb|EGR89123.1| 23S rRNA m2A2503 methyltransferase [Streptococcus dysgalactiae
subsp. equisimilis SK1250]
gi|410440498|emb|CCI63126.1| K06941 ribosomal RNA large subunit methyltransferase N
[Streptococcus dysgalactiae subsp. equisimilis AC-2713]
Length = 360
Score = 198 bits (504), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 120/355 (33%), Positives = 195/355 (54%), Gaps = 34/355 (9%)
Query: 22 GIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKF--KPLTSTLHSVVDSSDDVT 79
G K+ IW ++ + +D+ ++ ++L+ F PL +V S D T
Sbjct: 21 GQKKFRATQIWDWLYKKRVQSFDDMTNISKDFIAILKENFCVNPLK---QRIVQESADGT 77
Query: 80 TKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTM 139
K L +L +G +E V+MR ++ G ++C+++QVGC +GC FCA+G +
Sbjct: 78 VKYLFELPDGMLIETVLMR------QHYGH--------SVCVTTQVGCNIGCTFCASGLI 123
Query: 140 GFKSNLSSGEIVEQLVHASRLSNIR-------NVVFMGMGEPLNNYAALVEAVRIMT--- 189
+ +L+SGEI Q++ + + R +VV MG+GEP +NY ++ +R +
Sbjct: 124 KKQRDLNSGEITAQIMLVQKYFDERGQDERVSHVVVMGIGEPFDNYQNVMSFLRTINDDN 183
Query: 190 GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEK 249
GL + + ITVST G+ H I +F ++ +NLAVSLHAP D+R IM R+FPLEK
Sbjct: 184 GLA--IGARHITVSTSGLAHKIREFANEGVQVNLAVSLHAPNNDLRSSIMRINRSFPLEK 241
Query: 250 LMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVV--VNLIPFNPIGSV 307
L A++ Y + + +++ EYIML+ VND + A +L L + + + VNLIP+NP+
Sbjct: 242 LFAAIEYYIETTNRRVTFEYIMLNEVNDGVEQAQELADLTKNIRKLSYVNLIPYNPVSEH 301
Query: 308 SQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDKISAKS 362
Q+ S ++VS+F +L+ + + VR++ G DI ACGQL N K K+
Sbjct: 302 DQYSRSPKERVSAFYDVLKKN-GVNCVVRQEHGTDIDAACGQLRSNTMKKDREKA 355
>gi|169831742|ref|YP_001717724.1| radical SAM protein [Candidatus Desulforudis audaxviator MP104C]
gi|205829744|sp|B1I501.1|RLMN_DESAP RecName: Full=Probable dual-specificity RNA methyltransferase RlmN;
AltName: Full=23S rRNA
(adenine(2503)-C(2))-methyltransferase; AltName:
Full=23S rRNA m2A2503 methyltransferase; AltName:
Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=tRNA (adenine(37)-C(2))-methyltransferase;
AltName: Full=tRNA m2A37 methyltransferase
gi|169638586|gb|ACA60092.1| radical SAM enzyme, Cfr family [Candidatus Desulforudis audaxviator
MP104C]
Length = 318
Score = 198 bits (504), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 114/287 (39%), Positives = 169/287 (58%), Gaps = 22/287 (7%)
Query: 68 LHSVVDSSDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGC 127
L S V ++ D T K L+ L +G VE V+MR+D T+C+SSQVGC
Sbjct: 39 LDSRVSAAGD-TVKYLLGLDDGHAVETVLMRHDYG--------------RTVCVSSQVGC 83
Query: 128 KMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN--IRNVVFMGMGEPLNNYAALVEAV 185
+M C FCA+ G+ NL SGE+ EQ++ R S + +VV MGMGEPL+NY ++ V
Sbjct: 84 RMACRFCASALGGWIRNLRSGELYEQVLAVRRASGEPVTHVVLMGMGEPLDNYENTLKFV 143
Query: 186 RIMTGLPF--QVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAAR 243
+T P+ ++S +RIT+ST G+V I K + L LA+SLHAP +R ++P R
Sbjct: 144 ANVTA-PYGLRLSQRRITLSTCGLVPEIQKLARERLALTLAISLHAPNNALRDTLVPVNR 202
Query: 244 AFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNP 303
+PLE+L+ A EY + + +++ EYI+L GVND + A +L LL VNLIP NP
Sbjct: 203 KYPLEQLIPACAEYARRTGRRVSFEYILLGGVNDSPELARELSDLLTGLLGHVNLIPANP 262
Query: 304 IGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 350
+ S +R S + V +F+++L + ++R+++G DI ACGQL
Sbjct: 263 VPE-SGYRAPSPEAVRTFRRVLEEG-GVPVSLRRELGADIGAACGQL 307
>gi|408402057|ref|YP_006860021.1| radical SAM family enzyme [Streptococcus dysgalactiae subsp.
equisimilis RE378]
gi|407968286|dbj|BAM61524.1| radical SAM family enzyme [Streptococcus dysgalactiae subsp.
equisimilis RE378]
Length = 360
Score = 198 bits (504), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 120/355 (33%), Positives = 195/355 (54%), Gaps = 34/355 (9%)
Query: 22 GIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKF--KPLTSTLHSVVDSSDDVT 79
G K+ IW ++ + +D+ ++ ++L+ F PL +V S D T
Sbjct: 21 GQKKFRATQIWDWLYKKRVQSFDDMTNISKDFIAILKENFCVNPLK---QRIVQESADGT 77
Query: 80 TKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTM 139
K L +L +G +E V+MR ++ G ++C+++QVGC +GC FCA+G +
Sbjct: 78 VKYLFELPDGMLIETVLMR------QHYGH--------SVCVTTQVGCNIGCTFCASGLI 123
Query: 140 GFKSNLSSGEIVEQLVHASRLSNIR-------NVVFMGMGEPLNNYAALVEAVRIMT--- 189
+ +L+SGEI Q++ + + R +VV MG+GEP +NY ++ +R +
Sbjct: 124 KKQRDLNSGEITAQIMLVQKYFDERGQDERVSHVVVMGIGEPFDNYQNVMSFLRTINDDN 183
Query: 190 GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEK 249
GL + + ITVST G+ H I +F ++ +NLAVSLHAP D+R IM R+FPLEK
Sbjct: 184 GLA--IGSRHITVSTSGLAHKIREFANEGVQVNLAVSLHAPNNDLRSSIMRINRSFPLEK 241
Query: 250 LMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVV--VNLIPFNPIGSV 307
L A++ Y + + +++ EYIML+ VND + A +L L + + + VNLIP+NP+
Sbjct: 242 LFAAIEYYIETTNRRVTFEYIMLNEVNDGVEQAQELADLTKNIRKLSYVNLIPYNPVSEH 301
Query: 308 SQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDKISAKS 362
Q+ S ++VS+F +L+ + + VR++ G DI ACGQL N K K+
Sbjct: 302 DQYSRSPKERVSAFYDVLKKN-GVNCVVRQEHGTDIDAACGQLRSNTMKKDREKA 355
>gi|333375090|ref|ZP_08466914.1| cfr family radical SAM enzyme [Kingella kingae ATCC 23330]
gi|332971507|gb|EGK10457.1| cfr family radical SAM enzyme [Kingella kingae ATCC 23330]
Length = 364
Score = 198 bits (504), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 122/294 (41%), Positives = 169/294 (57%), Gaps = 27/294 (9%)
Query: 74 SSDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNF 133
S D T K L+ + G VE V + P R TLCISSQVGC + C F
Sbjct: 72 ESKDGTRKWLLDVGTGNGVETVFI--------------PETERGTLCISSQVGCALECTF 117
Query: 134 CATGTMGFKSNLSSGEIVEQLVHASRLSN--------IRNVVFMGMGEPLNNYAALVEAV 185
C+TG GF NLS+ EI+ QL A++ I NVV MGMGEPL NY ++ A+
Sbjct: 118 CSTGRQGFNRNLSAAEIIGQLWWANKALGVTPKNERVISNVVMMGMGEPLANYDNVITAL 177
Query: 186 RIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARA 244
IM + +S +R+TVST G+V +++ D+P + LAVSLHA VR +I+P +
Sbjct: 178 SIMLDDHGYGLSRRRVTVSTSGMVPQMDRLKEDMP-VALAVSLHASNDKVRDEIVPLNKK 236
Query: 245 FPLEKLMNALKEYQ-KNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNP 303
+PL++LM A Y K + I EY+MLDGVND+ +HA +L +L++ NLIPFNP
Sbjct: 237 YPLKELMAACNRYLVKAPRDFITFEYVMLDGVNDKPEHARELVELVKDTPCKFNLIPFNP 296
Query: 304 IGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDK 357
+ S + SS+ ++ F++IL + ++ TTVRK G DI ACGQL + DK
Sbjct: 297 FPN-SGYERSSNKNINIFKEILMEA-DLVTTVRKTRGDDIDAACGQLAGQVKDK 348
>gi|313890464|ref|ZP_07824093.1| 23S rRNA m2A2503 methyltransferase [Streptococcus pseudoporcinus
SPIN 20026]
gi|416852998|ref|ZP_11910143.1| 23S rRNA m2A2503 methyltransferase [Streptococcus pseudoporcinus LQ
940-04]
gi|313121166|gb|EFR44276.1| 23S rRNA m2A2503 methyltransferase [Streptococcus pseudoporcinus
SPIN 20026]
gi|356740487|gb|EHI65719.1| 23S rRNA m2A2503 methyltransferase [Streptococcus pseudoporcinus LQ
940-04]
Length = 361
Score = 198 bits (504), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 121/357 (33%), Positives = 193/357 (54%), Gaps = 30/357 (8%)
Query: 22 GIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHSVVDSSDDVTTK 81
G K+ IW ++ + ++E ++ +LL KF L +V S D T K
Sbjct: 21 GQKKFRATQIWDWLYKKRVQSFEEMTNISKDFIALLNEKF-CLNPLKQRIVQESADGTVK 79
Query: 82 LLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGF 141
L +L +G +E V+MR ++ G ++C+++QVGC +GC FCA+G +
Sbjct: 80 YLFELPDGMLIETVLMR------QHYG--------HSVCVTTQVGCNIGCTFCASGLIKK 125
Query: 142 KSNLSSGEIVEQLVHASRLSNIR-------NVVFMGMGEPLNNYAALVEAVRIMT---GL 191
+ +L+SGEI Q++ + + R +VV MG+GEP +NY ++ +R + GL
Sbjct: 126 QRDLNSGEITAQIMLVQKYFDERGQDERVSHVVVMGIGEPFDNYKNVMTFLRTINDDNGL 185
Query: 192 PFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLM 251
+ + ITVST G+ H I F ++ +NLAVSLHAP ++R IM R+FPLEKL
Sbjct: 186 A--IGARHITVSTSGLAHKIRDFANEGVQVNLAVSLHAPNNELRSSIMRINRSFPLEKLF 243
Query: 252 NALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVV--VNLIPFNPIGSVSQ 309
A++ Y + + +++ EYIML+ VND + A +L L + + + VNLIP+NP+ Q
Sbjct: 244 TAIEYYIETTNRRVTFEYIMLNEVNDGVEQAKELADLTKNIRKLSYVNLIPYNPVSEHDQ 303
Query: 310 FRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDKISAKSTPPV 366
+ S ++V +F IL+ + + VR++ G DI ACGQL N K K+ V
Sbjct: 304 YSRSPKERVEAFYDILKKN-GVNCVVRQEHGTDIDAACGQLRSNTMKKDRQKAAAKV 359
>gi|251797737|ref|YP_003012468.1| ribosomal RNA large subunit methyltransferase N [Paenibacillus sp.
JDR-2]
gi|247545363|gb|ACT02382.1| radical SAM enzyme, Cfr family [Paenibacillus sp. JDR-2]
Length = 348
Score = 198 bits (504), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 116/327 (35%), Positives = 182/327 (55%), Gaps = 29/327 (8%)
Query: 32 WKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHSVVDSSDDVTTKLLVKLQNGGF 91
W YV + ++E +LP L F+ +T + + +S D T K L L +
Sbjct: 33 WLYVKRVKS--FEEMSNLPKPLREKLEESFQFVTLSEITKFESKDG-TVKFLFGLHDNHA 89
Query: 92 VEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIV 151
+E VIMR++ +++C+++QVGC++GC FCA+ G K NL++GEIV
Sbjct: 90 IETVIMRHEYG--------------NSICVTTQVGCRIGCTFCASTLGGLKRNLTAGEIV 135
Query: 152 EQLVHASRL-----SNIRNVVFMGMGEPLNNYAALVEAVRIM---TGLPFQVSPKRITVS 203
Q+V A ++ + ++V MG GEP NY A + +RIM GL + + ITVS
Sbjct: 136 AQVVTAQQMLDATGERVSSIVIMGSGEPFENYDATMTFLRIMIHEKGL--NIGQRHITVS 193
Query: 204 TVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQ 263
T GIV ++ KF + +NLA+S+HAP +R ++MP R FP E +M A + + + +
Sbjct: 194 TSGIVPSMYKFTEENTQINLAISIHAPNDKLRSKLMPVNRRFPFEDVMAACRNHIAKTGR 253
Query: 264 KIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQK 323
+I EY ++ GVND+ +HA +L +L+ VNLIP N + + RT +D + FQ+
Sbjct: 254 RITFEYALIGGVNDQAEHAQELADVLQGMLCHVNLIPVNHVPERNYVRTPRND-IFEFQR 312
Query: 324 ILRGSYNIRTTVRKQMGQDISGACGQL 350
IL + I T+R++ G DI+ ACGQL
Sbjct: 313 ILEKN-KINCTIRREQGHDIAAACGQL 338
>gi|56461137|ref|YP_156418.1| ribosomal RNA large subunit methyltransferase N [Idiomarina
loihiensis L2TR]
gi|81363032|sp|Q5QYC0.1|RLMN_IDILO RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|56180147|gb|AAV82869.1| Predicted Fe-S-cluster redox enzyme [Idiomarina loihiensis L2TR]
Length = 378
Score = 198 bits (504), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 129/359 (35%), Positives = 189/359 (52%), Gaps = 36/359 (10%)
Query: 14 IRAEFEKAGIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHSVV- 72
I+ F + G K + K++ ++DE +L A LR K K + V
Sbjct: 19 IKEFFREMGEKPFRAEQVMKWLYHFCVDDFDEMTNLNKA----LREKLKQVAEIRAPEVR 74
Query: 73 --DSSDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMG 130
S D T K + L +G VE V + P G R+TLC+SSQVGC +
Sbjct: 75 EQQQSSDGTIKFAMTLFDGQDVETVWI--------------PEGDRATLCVSSQVGCALE 120
Query: 131 CNFCATGTMGFKSNLSSGEIVEQLVHASRL---------SNIRNVVFMGMGEPLNNYAAL 181
C FC+TG GF NLS EI+ Q+ ++L + NVV MGMGEPL N +
Sbjct: 121 CTFCSTGAQGFNRNLSVAEIIGQVWRVNQLLGAYGKTGIKPVTNVVMMGMGEPLLNLNNV 180
Query: 182 VEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMP 240
V A+ +M L F +S +R+T+ST G+V A+ K + + LA+SLHAP ++R +I+P
Sbjct: 181 VPAMELMLDDLGFGLSKRRVTLSTSGVVPALEKLRERIDVM-LAISLHAPDDELRNEIVP 239
Query: 241 AARAFPLEKLMNALKEY--QKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNL 298
+ + +E+ + + + Y Q +Q+K+ +EY+MLD VND AH L K L+ +NL
Sbjct: 240 INKKYNIEEFLASSRRYVEQSKAQRKVTVEYVMLDHVNDSTDQAHALAKTLKDTPSKINL 299
Query: 299 IPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDK 357
IPFNP S + SS+ ++ F K+L Y + VRK G DI ACGQLV ++ D+
Sbjct: 300 IPFNPFPG-SDYGRSSNSRIDRFAKVLM-EYGLTVMVRKTRGDDIDAACGQLVGDVIDR 356
>gi|357126962|ref|XP_003565156.1| PREDICTED: ribosomal RNA large subunit methyltransferase N-like
[Brachypodium distachyon]
Length = 409
Score = 198 bits (504), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 125/336 (37%), Positives = 186/336 (55%), Gaps = 19/336 (5%)
Query: 35 VIENPNCEWDEFPSLPSA-AYSLLRSKFKPLTSTLHSVVDSSDDVTTKLLVKLQNGGFVE 93
V +N + + F +P +L+ + ++ S +H V ++D TTK+L+KL++ VE
Sbjct: 68 VYKNRATQIEAFAYVPKVFREALVGAGWRVGRSPVHHAVTATDG-TTKILLKLEDNRLVE 126
Query: 94 AVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQ 153
V + D G R T C+SSQVGC + C+FCATG GF NL EIVEQ
Sbjct: 127 TVGIPVDDK----------GSSRLTACVSSQVGCPLRCSFCATGKGGFARNLHGHEIVEQ 176
Query: 154 L--VHASRLSNIRNVVFMGMGEPLNNYAALVEAVRIMTGLPFQVSPKRITVSTVGIVHAI 211
+ + S + NVVFMGMGEP+ N A++EA R + ++ + +T+STVG+ + I
Sbjct: 177 VLAIEESFKHRVTNVVFMGMGEPMLNLKAVLEAHRCLNK-ELKIGQRMMTISTVGVPNTI 235
Query: 212 NKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIM 271
NK + LAVSLHAP Q +R I+P+A+A+PLE LM+ K Y + +++ EY +
Sbjct: 236 NKLATHKLQSTLAVSLHAPNQKLRETIVPSAKAYPLEALMDDCKNYFLETGRRVSFEYTL 295
Query: 272 LDGVNDEEQHAHQLGKLLETF--QVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSY 329
L G+NDE+ HA +L LL VNLIP+NP+ S+++ + +F L S
Sbjct: 296 LAGINDEKAHAEELAALLHACGGGYHVNLIPYNPVEG-SEYKRPYRKAIQAFVDALE-SR 353
Query: 330 NIRTTVRKQMGQDISGACGQLVVNLPDKISAKSTPP 365
I +VR+ G D + ACGQL +S+PP
Sbjct: 354 KITVSVRQTRGLDANAACGQLRNEFQKNPLLESSPP 389
>gi|121604771|ref|YP_982100.1| radical SAM protein [Polaromonas naphthalenivorans CJ2]
gi|205829800|sp|A1VNF1.1|RLMN_POLNA RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|120593740|gb|ABM37179.1| 23S rRNA m(2)A-2503 methyltransferase [Polaromonas
naphthalenivorans CJ2]
Length = 382
Score = 198 bits (504), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 137/373 (36%), Positives = 195/373 (52%), Gaps = 46/373 (12%)
Query: 9 FDGGIIRAEFEKAGIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTL 68
FD + A E+ G K+ +++++ + ++++ L + LR K L +
Sbjct: 8 FDLEGLAAFCEQLGQKRFRATQLFRWIHQKGASDFEQMTDLAKS----LREK---LAVSA 60
Query: 69 H----SVVD--SSDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCIS 122
H +VV S D T K L + G +E V + P R TLCIS
Sbjct: 61 HIQGLNVVSRHESADGTIKWLFDVGAGDVIETVFI--------------PETDRGTLCIS 106
Query: 123 SQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN---------IRNVVFMGMGE 173
SQ GC +GC FC+TG GF NL++GEI+ QL A I NVV MGMGE
Sbjct: 107 SQAGCAVGCRFCSTGHQGFSRNLTTGEIISQLWFAEHFLRKHLGRNERVISNVVMMGMGE 166
Query: 174 PLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQ 232
PL NY+ L+ A+++M + +S +R+TVST G+V I++ D P + LAVSLHAP
Sbjct: 167 PLQNYSQLLPALKVMLNDHGYGLSRRRVTVSTSGVVPMIDRLAKDCP-VALAVSLHAPQD 225
Query: 233 DVRCQIMPAARAFPLEKLMNALKEYQKNSQQK-IFIEYIMLDGVNDEEQHAHQLGKLLET 291
+R ++P + +P+ +L+ A YQ + + I EY MLDGVND+ +HA QL L++T
Sbjct: 226 ALRSNLVPLNKKYPIAELLEACTRYQSAAPRDFITFEYCMLDGVNDQPEHARQLVALMKT 285
Query: 292 -----FQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGA 346
NLIPFNP + R S +V +F KIL + I TTVRK G DI A
Sbjct: 286 HAANGLSCKFNLIPFNPFPASGLLR-SDMPQVMAFAKILMDA-GIITTVRKTRGDDIDAA 343
Query: 347 CGQLVVNLPDKIS 359
CGQL ++ D+ S
Sbjct: 344 CGQLAGDVQDRTS 356
>gi|350561447|ref|ZP_08930285.1| radical SAM enzyme, Cfr family [Thioalkalivibrio thiocyanoxidans
ARh 4]
gi|349780479|gb|EGZ34797.1| radical SAM enzyme, Cfr family [Thioalkalivibrio thiocyanoxidans
ARh 4]
Length = 377
Score = 198 bits (504), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 116/294 (39%), Positives = 169/294 (57%), Gaps = 28/294 (9%)
Query: 75 SDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFC 134
SDD T K +++L +G +E V + P R TLCISSQVGC + C FC
Sbjct: 79 SDDGTVKWVLRLADGNAIETVYI--------------PEDDRGTLCISSQVGCALDCTFC 124
Query: 135 ATGTMGFKSNLSSGEIVEQLVHASRL--------SNIRNVVFMGMGEPLNNYAALVEAVR 186
+T GF NLS+ EI+ QL A+R + NVVFMGMGEPL N A+V+AV
Sbjct: 125 STAQQGFNRNLSAQEIIGQLWLANRRLPIPEGRSRAVTNVVFMGMGEPLANVEAVVDAVD 184
Query: 187 IM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAF 245
+M + +S +R+TVST G+V A+++ + + LAVSLHAP +R +++P R +
Sbjct: 185 LMLDDNAYGLSKRRVTVSTSGLVPALDRLGAST-DVALAVSLHAPNDALRDRLVPINRKY 243
Query: 246 PLEKLMNALKEYQKNS--QQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNP 303
P+ +L++A + Y ++ ++ EY++L G+ND+ QHA +L LL +NLIPFNP
Sbjct: 244 PIRELLDACRRYTRDGARHHRVTFEYVLLAGINDQPQHARELITLLRDVPCKINLIPFNP 303
Query: 304 IGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDK 357
S F S + V F+K+L + + T VR+ G DI ACGQLV + D+
Sbjct: 304 FPG-SPFVRPSANAVQVFEKLLDDAGFV-TIVRRTRGDDIDAACGQLVGQVADR 355
>gi|431796136|ref|YP_007223040.1| 2-vinyl bacteriochlorophyllide hydratase [Echinicola vietnamensis
DSM 17526]
gi|430786901|gb|AGA77030.1| 23S rRNA m2A2503 methyltransferase [Echinicola vietnamensis DSM
17526]
Length = 352
Score = 198 bits (504), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 119/342 (34%), Positives = 181/342 (52%), Gaps = 28/342 (8%)
Query: 16 AEFEKAGIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHSVVDSS 75
AE +K +W ++N +D+ ++ + +L++ F + ++ S
Sbjct: 23 AEGDKKFRANQVYDWLWNKSLKN----FDDMTNISLSTREMLKANF-TINHLKVDLMQHS 77
Query: 76 DDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCA 135
D T K VKL + VE+V++ P R T C+SSQVGC + CNFCA
Sbjct: 78 SDGTIKNAVKLYDDKIVESVLI--------------PTSKRITACVSSQVGCSLDCNFCA 123
Query: 136 TGTMGFKSNLSSGEIVEQLVHASRLSN------IRNVVFMGMGEPLNNYAALVEAV-RIM 188
T + NL+ EI +Q+V + + N+VFMGMGEPL NYA ++ A+ +I
Sbjct: 124 TARLKRMRNLNPDEIYDQVVAIKDEAEKYFQRPLTNIVFMGMGEPLLNYANVISAIDKIT 183
Query: 189 TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLE 248
++ +RIT+STVGI I K D NLA+SLH+ + R ++MP P+E
Sbjct: 184 APEGLGMAARRITLSTVGIPKMIKKMADDEVKFNLAISLHSAINSTRSRLMPINDKSPVE 243
Query: 249 KLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVS 308
+L ++LK + +Q+K+ EY++ DG+ND+E+HA L K + VN+I +NPI
Sbjct: 244 ELADSLKYWYHKTQRKVTYEYVIWDGINDDEEHALALAKFCKHIPSKVNIIQYNPIDE-G 302
Query: 309 QFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 350
+FR +S + V + +IL G I VRK GQDI ACGQL
Sbjct: 303 EFRQASQEAVDMYVRILEGR-GIVAKVRKSRGQDIDAACGQL 343
>gi|312867068|ref|ZP_07727278.1| 23S rRNA m2A2503 methyltransferase [Streptococcus parasanguinis
F0405]
gi|311097197|gb|EFQ55431.1| 23S rRNA m2A2503 methyltransferase [Streptococcus parasanguinis
F0405]
Length = 362
Score = 198 bits (504), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 119/349 (34%), Positives = 191/349 (54%), Gaps = 34/349 (9%)
Query: 19 EKAGIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKF--KPLTSTLHSVVDSSD 76
E+ G K+ IW+++ ++E +L + L +F PL +V S
Sbjct: 18 EENGEKKFRAAQIWEWLYRKRVQSFEEMTNLSKDLIAKLNDQFVVNPLK---QRIVQESA 74
Query: 77 DVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCAT 136
D T K L +L +G +E V+MR L ++C+++QVGC +GC FCA+
Sbjct: 75 DGTVKYLFELPDGMLIETVLMRQHYGL--------------SVCVTTQVGCNIGCTFCAS 120
Query: 137 GTMGFKSNLSSGEIVEQLVHASRLSNIR-------NVVFMGMGEPLNNYAALVEAVRIMT 189
G + + +L++GEIV Q++ + + R ++V MG+GEP +NY +++ +R +
Sbjct: 121 GLIKKQRDLNNGEIVSQIMLVQKYFDERGQDERVSHIVVMGIGEPFDNYDNVLKFIRTVN 180
Query: 190 ---GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFP 246
GL + + ITVST G+ H I F ++ +NLAVSLHAP D+R IM RAFP
Sbjct: 181 DDKGLA--IGARHITVSTSGLAHKIRDFANEGVQVNLAVSLHAPNNDLRSSIMKINRAFP 238
Query: 247 LEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVV--VNLIPFNPI 304
+EKL A++ Y + + +++ EYIML+ VND + A +L +LL+ + + VNLIP+NP+
Sbjct: 239 IEKLFAAIEYYIETTNRRVTFEYIMLNEVNDGVEQALELAELLKNIKKLSYVNLIPYNPV 298
Query: 305 GSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVN 353
Q+ S ++V +F L+ + VR++ G DI ACGQL N
Sbjct: 299 SEHDQYSRSPKERVMAFYDTLKKQ-GVNCVVRQEHGTDIDAACGQLRSN 346
>gi|442805499|ref|YP_007373648.1| ribosomal RNA large subunit methyltransferase N [Clostridium
stercorarium subsp. stercorarium DSM 8532]
gi|442741349|gb|AGC69038.1| ribosomal RNA large subunit methyltransferase N [Clostridium
stercorarium subsp. stercorarium DSM 8532]
Length = 348
Score = 198 bits (504), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 110/323 (34%), Positives = 181/323 (56%), Gaps = 22/323 (6%)
Query: 31 IWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHSVVDSSDDVTTKLLVKLQNGG 90
+WK++ + +D+ LP A L+ F + + + S D T K L+ L +G
Sbjct: 33 VWKWIYQGTT-RFDDMTDLPKAFRERLKGVFYIGGAGIVNKFVSQKDGTRKYLLALYDGK 91
Query: 91 FVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEI 150
VE V+M+Y +++CIS+QVGC+MGC FCA+ GF NLS+GE+
Sbjct: 92 VVECVLMKYHYG--------------NSVCISTQVGCRMGCRFCASSQPGFDRNLSTGEM 137
Query: 151 VEQL--VHASRLSNIRNVVFMGMGEPLNNYAALVEAVRIMTGL-PFQVSPKRITVSTVGI 207
+ Q+ + I ++V MG+GEP +NY +V +R M +S +++TVST G+
Sbjct: 138 IAQVMAIRNDTEEKISHIVLMGIGEPFDNYDNVVRFLRRMNSQNTLNISYRKMTVSTCGL 197
Query: 208 VHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFI 267
V I KF + +NL+VSLHAP ++R +IMP A+ + ++ +++A Y + + +++
Sbjct: 198 VPGIIKFSEEGFPVNLSVSLHAPNDEIRMKIMPIAKRYSIDNILSACNIYTQKTGRRVTF 257
Query: 268 EYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRG 327
EY ++ VND +HA +L + L +NLIP N SV + ++V SF++I+
Sbjct: 258 EYTLIKDVNDRNEHAEELARKLSGLLCHINLIPVN---SVEGTGYTKSERVESFRRIIE- 313
Query: 328 SYNIRTTVRKQMGQDISGACGQL 350
Y I TVR+++G DI+ +CGQL
Sbjct: 314 KYGIPVTVRRELGSDIAASCGQL 336
>gi|157151429|ref|YP_001449957.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
gordonii str. Challis substr. CH1]
gi|205829902|sp|A8AVZ7.1|RLMN_STRGC RecName: Full=Probable dual-specificity RNA methyltransferase RlmN;
AltName: Full=23S rRNA
(adenine(2503)-C(2))-methyltransferase; AltName:
Full=23S rRNA m2A2503 methyltransferase; AltName:
Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=tRNA (adenine(37)-C(2))-methyltransferase;
AltName: Full=tRNA m2A37 methyltransferase
gi|157076223|gb|ABV10906.1| radical SAM enzyme, Cfr family [Streptococcus gordonii str. Challis
substr. CH1]
Length = 362
Score = 198 bits (504), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 119/349 (34%), Positives = 191/349 (54%), Gaps = 34/349 (9%)
Query: 19 EKAGIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKF--KPLTSTLHSVVDSSD 76
E G K+ IW+++ ++E +L + L +F PL +V S
Sbjct: 18 EAQGEKKFRAAQIWEWLYRKRVQSFEEMTNLSKDLIAKLNDQFVVNPLK---QRIVQESA 74
Query: 77 DVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCAT 136
D T K L +L +G +E V+MR L ++C+++QVGC +GC FCA+
Sbjct: 75 DGTVKYLFELPDGMLIETVLMRQHYGL--------------SVCVTTQVGCNIGCTFCAS 120
Query: 137 GTMGFKSNLSSGEIVEQLVHASRLSNIR-------NVVFMGMGEPLNNYAALVEAVRIMT 189
G + + +L++GEIV Q++ + + R ++V MG+GEP +NY +++ VR +
Sbjct: 121 GLIKKQRDLNNGEIVSQIMLVQKYFDERGQDERVSHIVVMGIGEPFDNYDNVLKFVRTVN 180
Query: 190 ---GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFP 246
GL + + ITVST G+ H I F ++ +NLAVSLHAP D+R IM R+FP
Sbjct: 181 DDKGLA--IGARHITVSTSGLAHKIRDFANEGVQVNLAVSLHAPNNDLRTSIMRINRSFP 238
Query: 247 LEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVV--VNLIPFNPI 304
+EKL A++ Y + + +++ EYIML+ VND + A +L +LL+ + + VNLIP+NP+
Sbjct: 239 IEKLFAAIEYYIETTNRRVTFEYIMLNEVNDGVEQAKELAELLKNIRKLSYVNLIPYNPV 298
Query: 305 GSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVN 353
Q+ S ++V +F L+ + + VR++ G DI ACGQL N
Sbjct: 299 SEHDQYSRSPKERVMAFYDTLKKN-GVNCVVRQEHGTDIDAACGQLRSN 346
>gi|119505391|ref|ZP_01627465.1| hypothetical protein MGP2080_14284 [marine gamma proteobacterium
HTCC2080]
gi|119458846|gb|EAW39947.1| hypothetical protein MGP2080_14284 [marine gamma proteobacterium
HTCC2080]
Length = 388
Score = 198 bits (504), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 120/317 (37%), Positives = 184/317 (58%), Gaps = 33/317 (10%)
Query: 57 LRSKFKPL-TSTLHSVVDSSD--DVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPG 113
LR K + L T T + D D D T K V++ G VEAV++ P
Sbjct: 66 LREKLETLATITPPEIADQQDSADGTRKWAVRVAGGALVEAVLI--------------PE 111
Query: 114 GPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQL---------VHASRLSNIR 164
R+TLC+SSQVGC + C FC+TG GF+ +L++ EI+ Q+ + + +
Sbjct: 112 AGRATLCVSSQVGCSLDCKFCSTGKQGFQRDLTAAEIIGQVWLAINSYSGWQSGKGRIVT 171
Query: 165 NVVFMGMGEPLNNYAALVEAVRIMT-GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNL 223
NVV MGMGEPL N+ +V A+ +MT L + +S +++T+ST G+V A+++ ++ ++L
Sbjct: 172 NVVMMGMGEPLLNFDNVVSAMSLMTDDLAYGLSKRKVTLSTSGVVPALDRL-AEFSDVSL 230
Query: 224 AVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEY---QKNSQQKIFIEYIMLDGVNDEEQ 280
AVSLHAP ++R +I+P R +P+++L+ + K Y Q + ++ + IEY +L GVND+ +
Sbjct: 231 AVSLHAPNDEIRNKIVPINRRYPIQQLLQSAKSYIDAQSDRKRVVTIEYTLLAGVNDQPE 290
Query: 281 HAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMG 340
HA +L LL+ F +NLIPFN + S F S + VS F ++L + I TVR G
Sbjct: 291 HARELSTLLKDFPCKINLIPFNHFPN-SGFDRPSGNAVSRFWQVLVDAGFI-VTVRSTRG 348
Query: 341 QDISGACGQLVVNLPDK 357
DI ACGQLV + D+
Sbjct: 349 DDIDAACGQLVGEVVDR 365
>gi|310778596|ref|YP_003966929.1| 23S rRNA m(2)A-2503 methyltransferase [Ilyobacter polytropus DSM
2926]
gi|309747919|gb|ADO82581.1| 23S rRNA m(2)A-2503 methyltransferase [Ilyobacter polytropus DSM
2926]
Length = 349
Score = 198 bits (504), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 113/315 (35%), Positives = 175/315 (55%), Gaps = 24/315 (7%)
Query: 44 DEFPSLPSAAYSLLRSK-FKPLTSTLHSVVDSSDDVTTKLLVKLQNGGFVEAVIMRYDSS 102
D+ ++ LL+SK + P + + S D T K + KL++G +E V++++
Sbjct: 45 DDMTNISKKNRELLQSKSYIPFLNVVKHKT-SKIDYTEKFVFKLEDGNTIETVLLKHKE- 102
Query: 103 LGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRL-- 160
R+TLCISSQVGC + C+FCATG GF NL+ EI+ Q+ R
Sbjct: 103 -------------RNTLCISSQVGCPVKCSFCATGLDGFVRNLNVHEILNQVYTVQRRFF 149
Query: 161 ----SNIRNVVFMGMGEPLNNYAALVEAVRIMTGLP-FQVSPKRITVSTVGIVHAINKFH 215
NI NVVFMGMGEP+ N +++AV I++ +S +RIT+ST GI+ I K
Sbjct: 150 KSEGKNITNVVFMGMGEPMLNIENVIKAVDILSDENGMNISKRRITISTSGIIPGIEKLL 209
Query: 216 SDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGV 275
+ + LA+SLHA + R ++P R +PLE L L EYQK ++++I EY+++D +
Sbjct: 210 QEKIPVELAISLHAITNEKRDALIPINRKYPLEDLYTILNEYQKITKRRITFEYVLIDKL 269
Query: 276 NDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTV 335
N + A +L + + +F V+NLIP+NP+ + + + +K+ F L + T+
Sbjct: 270 NVTQSDADRLAEFMHSFDHVLNLIPYNPVPG-NDYERPAPEKIKKFYNYLLNERKVNVTL 328
Query: 336 RKQMGQDISGACGQL 350
R + G DI GACGQL
Sbjct: 329 RHEKGSDIDGACGQL 343
>gi|167037727|ref|YP_001665305.1| ribosomal RNA large subunit methyltransferase N [Thermoanaerobacter
pseudethanolicus ATCC 33223]
gi|167040388|ref|YP_001663373.1| ribosomal RNA large subunit methyltransferase N [Thermoanaerobacter
sp. X514]
gi|256752274|ref|ZP_05493137.1| radical SAM enzyme, Cfr family [Thermoanaerobacter ethanolicus
CCSD1]
gi|300914472|ref|ZP_07131788.1| radical SAM enzyme, Cfr family [Thermoanaerobacter sp. X561]
gi|307724292|ref|YP_003904043.1| radical SAM enzyme, Cfr family [Thermoanaerobacter sp. X513]
gi|320116142|ref|YP_004186301.1| Cfr family radical SAM protein [Thermoanaerobacter brockii subsp.
finnii Ako-1]
gi|205829918|sp|B0KA06.1|RLMN_THEP3 RecName: Full=Probable dual-specificity RNA methyltransferase RlmN;
AltName: Full=23S rRNA
(adenine(2503)-C(2))-methyltransferase; AltName:
Full=23S rRNA m2A2503 methyltransferase; AltName:
Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=tRNA (adenine(37)-C(2))-methyltransferase;
AltName: Full=tRNA m2A37 methyltransferase
gi|205829919|sp|B0K1Y9.1|RLMN_THEPX RecName: Full=Probable dual-specificity RNA methyltransferase RlmN;
AltName: Full=23S rRNA
(adenine(2503)-C(2))-methyltransferase; AltName:
Full=23S rRNA m2A2503 methyltransferase; AltName:
Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=tRNA (adenine(37)-C(2))-methyltransferase;
AltName: Full=tRNA m2A37 methyltransferase
gi|166854628|gb|ABY93037.1| radical SAM enzyme, Cfr family [Thermoanaerobacter sp. X514]
gi|166856561|gb|ABY94969.1| radical SAM enzyme, Cfr family [Thermoanaerobacter pseudethanolicus
ATCC 33223]
gi|256748842|gb|EEU61883.1| radical SAM enzyme, Cfr family [Thermoanaerobacter ethanolicus
CCSD1]
gi|300889407|gb|EFK84553.1| radical SAM enzyme, Cfr family [Thermoanaerobacter sp. X561]
gi|307581353|gb|ADN54752.1| radical SAM enzyme, Cfr family [Thermoanaerobacter sp. X513]
gi|319929233|gb|ADV79918.1| radical SAM enzyme, Cfr family [Thermoanaerobacter brockii subsp.
finnii Ako-1]
Length = 342
Score = 198 bits (504), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 117/341 (34%), Positives = 194/341 (56%), Gaps = 30/341 (8%)
Query: 18 FEKAGIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHSVVD---- 73
F G ++ I+K++ ++D+ + LRSK K + ++
Sbjct: 16 FVNIGESRYRAKQIYKWIYGKKVTDFDQMTDISKN----LRSKLKEIAYVSQLKIEERRV 71
Query: 74 SSDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNF 133
S D T K L L++G +E V ++Y R G +T C+S+QVGC M C+F
Sbjct: 72 SEIDDTVKYLFLLEDGNIIEGVAIKY-----------RFG---NTACVSTQVGCNMRCSF 117
Query: 134 CATGTMGFKSNLSSGEIVEQLVHA-SRLSNIRNVVFMGMGEPLNNYAALVEAVRIMT--- 189
CA+ G +L + E+V+Q++ S I N+V MG GEP +NY +++ ++I+
Sbjct: 118 CASAIGGKVRDLKASEMVDQVMAIDSDYGKISNIVLMGSGEPFDNYDEVMKFIKIVNNPH 177
Query: 190 GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEK 249
GL + + IT+ST GIV I +F + +NL++SLHAP ++R Q+MP +A+PLE+
Sbjct: 178 GLG--IGSRHITISTCGIVPKIYQFADEKLQVNLSISLHAPNDELRTQLMPINKAYPLEE 235
Query: 250 LMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQ 309
LM A K Y ++++I EY +++GVND+++HA+QL LL+ +NLIP N + +
Sbjct: 236 LMKACKYYVDKTRRRITFEYSLIEGVNDKKEHAYQLVDLLKGMLCHINLIPINYVREIG- 294
Query: 310 FRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 350
F+ ++++KV F++I+ + I TVR+++G DI ACGQL
Sbjct: 295 FKKANNEKVMMFKRIIEDA-GISCTVRRELGSDIEAACGQL 334
>gi|56962424|ref|YP_174150.1| ribosomal RNA large subunit methyltransferase N [Bacillus clausii
KSM-K16]
gi|81601050|sp|Q5WKB6.1|RLMN_BACSK RecName: Full=Probable dual-specificity RNA methyltransferase RlmN;
AltName: Full=23S rRNA
(adenine(2503)-C(2))-methyltransferase; AltName:
Full=23S rRNA m2A2503 methyltransferase; AltName:
Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=tRNA (adenine(37)-C(2))-methyltransferase;
AltName: Full=tRNA m2A37 methyltransferase
gi|56908662|dbj|BAD63189.1| conserved hypothetical protein [Bacillus clausii KSM-K16]
Length = 356
Score = 198 bits (504), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 115/339 (33%), Positives = 182/339 (53%), Gaps = 26/339 (7%)
Query: 22 GIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHSVVDSSDDVTTK 81
G K+ +W ++ + E ++ LL F T + H V S D T K
Sbjct: 22 GHKKFRATQVWDWLYRKRVTTFAEMTNVNKDCLQLLEDHFAIETMSEH-VRQESKDGTIK 80
Query: 82 LLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGF 141
L +LQ+G +E V+MR+ ++C+++QVGC +GC+FCA+G +
Sbjct: 81 FLFRLQDGNLIETVLMRHKYGF--------------SVCVTTQVGCNIGCSFCASGLLTK 126
Query: 142 KSNLSSGEIVEQLV-------HASRLSNIRNVVFMGMGEPLNNYAALVEAVRIMTGLP-F 193
+LSSGEIVEQ++ + + +VV MG+GEP +N+ V+ + I+
Sbjct: 127 NRDLSSGEIVEQIMKVQFHLDQVGKEERVSHVVVMGIGEPFDNFQNTVDFLEIIKDHKGL 186
Query: 194 QVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNA 253
+ + ITVST G+ H I +F +NLAVSLHAP ++R +IM +AFP+EKLM++
Sbjct: 187 AIGARHITVSTSGLAHKIYEFADLKLQVNLAVSLHAPNNELRSRIMKINKAFPIEKLMDS 246
Query: 254 LKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLL--ETFQVVVNLIPFNPIGSVSQFR 311
+ Y + + +++ EYI++ VND ++ A QL +L+ + VNLIP+NP+ SQ++
Sbjct: 247 INYYIEKTNRRVTYEYILIKDVNDHKEEALQLAELIGDKRHLSYVNLIPYNPVDEHSQYQ 306
Query: 312 TSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 350
S + +S F L+ I VR + G DI ACGQL
Sbjct: 307 RSEPEAISQFFDTLKKK-GINCGVRLEHGTDIDAACGQL 344
>gi|374317036|ref|YP_005063464.1| 2-vinyl bacteriochlorophyllide hydratase [Sphaerochaeta pleomorpha
str. Grapes]
gi|359352680|gb|AEV30454.1| 23S rRNA m2A2503 methyltransferase [Sphaerochaeta pleomorpha str.
Grapes]
Length = 358
Score = 198 bits (504), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 119/327 (36%), Positives = 178/327 (54%), Gaps = 19/327 (5%)
Query: 31 IWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHSVVDSSDDVTTKLLVKLQNGG 90
I+K++I + +D+ LP L +S+ ++ + +KL +KL +G
Sbjct: 34 IYKWLIRGAS-SFDQMTDLPKLERQRLSEMMPSFSSSTVETTETDESGASKLGIKLFDGS 92
Query: 91 FVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEI 150
+E V++ DS R T C+SSQVGC MGC FC TGTMG K NL++ EI
Sbjct: 93 IIECVLL-IDSK------------GRHTACLSSQVGCAMGCTFCRTGTMGLKRNLTAEEI 139
Query: 151 VEQLVHASRLSN--IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGI 207
+EQ +H +R+S+ I ++V+MGMGEPL N A + ++R F +S +RIT+ST G+
Sbjct: 140 IEQYIHLTRVSDEPITHIVYMGMGEPLANIAPVTRSIRYFHEENGFNISLRRITISTCGV 199
Query: 208 VHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFI 267
V I K + LAVSL + R ++MP + L +L AL YQ+ ++ +
Sbjct: 200 VPGILKLSEQKLPVKLAVSLVSADNRTRSRVMPINETWDLPELKKALLRYQRTGGKRFTL 259
Query: 268 EYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRG 327
EY +L VN +E A +L + VVVNLIP+NP + + T S+ ++ SF L
Sbjct: 260 EYCLLHNVNTDESAAKKLATYVREMDVVVNLIPWNPAEGLP-YETPSEQEIDSFAHYL-D 317
Query: 328 SYNIRTTVRKQMGQDISGACGQLVVNL 354
NI+ T R G++I+GACGQL V L
Sbjct: 318 RMNIKFTRRYSRGREINGACGQLAVPL 344
>gi|384159441|ref|YP_005541514.1| ribosomal RNA large subunit methyltransferase N [Bacillus
amyloliquefaciens TA208]
gi|384164124|ref|YP_005545503.1| Fe-S-cluster AdoMet radical enzyme [Bacillus amyloliquefaciens LL3]
gi|384168488|ref|YP_005549866.1| ribosomal RNA large subunit methyltransferase N [Bacillus
amyloliquefaciens XH7]
gi|328553529|gb|AEB24021.1| ribosomal RNA large subunit methyltransferase N [Bacillus
amyloliquefaciens TA208]
gi|328911679|gb|AEB63275.1| putative Fe-S-cluster AdoMet radical enzyme [Bacillus
amyloliquefaciens LL3]
gi|341827767|gb|AEK89018.1| ribosomal RNA large subunit methyltransferase N [Bacillus
amyloliquefaciens XH7]
Length = 363
Score = 198 bits (504), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 113/328 (34%), Positives = 185/328 (56%), Gaps = 27/328 (8%)
Query: 31 IWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHSVVDSSDDVTTKLLVKLQNGG 90
I++++ E +DE +L + L S F +T+ +V +S D T K L +L +G
Sbjct: 45 IFEWLYEKRVSSFDEMTNLSKSLREKLESNF-VMTTLKTAVKQTSQDGTMKFLFELHDGY 103
Query: 91 FVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEI 150
+E V+MR++ +++C+++QVGC++GC FCA+ G K NL +GEI
Sbjct: 104 TIETVLMRHEYG--------------NSVCVTTQVGCRIGCTFCASTLGGLKRNLEAGEI 149
Query: 151 VEQLVHASRL-----SNIRNVVFMGMGEPLNNYAALVEAVRIMT---GLPFQVSPKRITV 202
V Q+V + + +VV MG+GEP +N+ ++ ++I+ GL + + ITV
Sbjct: 150 VAQVVKVQKALDETDERVSSVVIMGIGEPFDNFNEMLAFLKIINHDKGL--NIGARHITV 207
Query: 203 STVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQ 262
ST GI+ I F +N A+SLHAP ++R ++MP +A+ L LM A+K Y + +
Sbjct: 208 STSGIIPKIYDFADQKMQINFAISLHAPNTEIRSRLMPINKAYKLPDLMEAVKYYIEKTG 267
Query: 263 QKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQ 322
++I EY + GVND+ +HA +L +LL+ + VNLIP N + RT D++ +F+
Sbjct: 268 RRISFEYGLFGGVNDQVEHAEELAELLKGVKCHVNLIPVNYVPERDYVRTPR-DQIFAFE 326
Query: 323 KILRGSYNIRTTVRKQMGQDISGACGQL 350
K L+ S + T+R++ G DI ACGQL
Sbjct: 327 KTLK-SRGVNVTIRREQGHDIDAACGQL 353
>gi|322389001|ref|ZP_08062571.1| cfr family radical SAM enzyme [Streptococcus parasanguinis ATCC
903]
gi|417917425|ref|ZP_12560984.1| 23S rRNA m2A2503 methyltransferase [Streptococcus parasanguinis
SK236]
gi|321144306|gb|EFX39714.1| cfr family radical SAM enzyme [Streptococcus parasanguinis ATCC
903]
gi|342830062|gb|EGU64401.1| 23S rRNA m2A2503 methyltransferase [Streptococcus parasanguinis
SK236]
Length = 362
Score = 198 bits (504), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 119/349 (34%), Positives = 191/349 (54%), Gaps = 34/349 (9%)
Query: 19 EKAGIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKF--KPLTSTLHSVVDSSD 76
E+ G K+ IW+++ ++E +L + L +F PL +V S
Sbjct: 18 EENGEKKFRAAQIWEWLYRKRVQSFEEMTNLSKDLIAKLNDQFVVNPLK---QRIVQESA 74
Query: 77 DVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCAT 136
D T K L +L +G +E V+MR L ++C+++QVGC +GC FCA+
Sbjct: 75 DGTVKYLFELPDGMLIETVLMRQHYGL--------------SVCVTTQVGCNIGCTFCAS 120
Query: 137 GTMGFKSNLSSGEIVEQLVHASRLSNIR-------NVVFMGMGEPLNNYAALVEAVRIMT 189
G + + +L++GEIV Q++ + + R ++V MG+GEP +NY +++ +R +
Sbjct: 121 GLIKKQRDLNNGEIVSQIMLVQKYFDERGQDERVSHIVVMGIGEPFDNYNNVLKFIRTVN 180
Query: 190 ---GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFP 246
GL + + ITVST G+ H I F ++ +NLAVSLHAP D+R IM RAFP
Sbjct: 181 DDKGLA--IGARHITVSTSGLAHKIRDFANEGVQVNLAVSLHAPNNDLRSSIMKINRAFP 238
Query: 247 LEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVV--VNLIPFNPI 304
+EKL A++ Y + + +++ EYIML+ VND + A +L +LL+ + + VNLIP+NP+
Sbjct: 239 IEKLFAAIEYYIETTNRRVTFEYIMLNEVNDGVEQALELAELLKNIKKLSYVNLIPYNPV 298
Query: 305 GSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVN 353
Q+ S ++V +F L+ + VR++ G DI ACGQL N
Sbjct: 299 SEHDQYSRSPKERVMAFYDTLKKQ-GVNCVVRQEHGTDIDAACGQLRSN 346
>gi|374296870|ref|YP_005047061.1| 23S rRNA m(2)A-2503 methyltransferase [Clostridium clariflavum DSM
19732]
gi|359826364|gb|AEV69137.1| 23S rRNA m(2)A-2503 methyltransferase [Clostridium clariflavum DSM
19732]
Length = 348
Score = 198 bits (504), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 109/280 (38%), Positives = 169/280 (60%), Gaps = 19/280 (6%)
Query: 74 SSDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNF 133
S D TTK L KL +G +E+V+M+Y L ++CISSQVGCKMGC F
Sbjct: 74 SKIDGTTKYLFKLMDGNIIESVLMKYQHGL--------------SVCISSQVGCKMGCKF 119
Query: 134 CATGTMGFKSNLSSGEIVEQLVHASRL--SNIRNVVFMGMGEPLNNYAALVEAVRIMTGL 191
CA+ GF NL++ E+++Q++ + S I N+V MG+GEP +NY L++ +R++
Sbjct: 120 CASTGAGFVRNLTASEMLDQVITIQKDAGSRIGNIVVMGIGEPFDNYDNLIKFIRLVNHK 179
Query: 192 P-FQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKL 250
+ + I+VST G+V I K + + L++SLHAP + R +IMP + + ++KL
Sbjct: 180 EGMNIGARHISVSTCGLVPEILKLSEENLPVTLSISLHAPNDEDREKIMPVNKRYSIDKL 239
Query: 251 MNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQF 310
+ A K Y + ++++I EY ++DGVND + A QL LL+ VNLIP N + + F
Sbjct: 240 IEACKIYTETTKRRITFEYALIDGVNDTFECAKQLSDLLKGMLCHVNLIPVNSVTNTG-F 298
Query: 311 RTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 350
+ SS ++V F+ +L + I TTVR+++G DI+ ACGQL
Sbjct: 299 KKSSRERVMKFKSVLE-KHGIETTVRRELGADINAACGQL 337
>gi|450088559|ref|ZP_21854846.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
mutans NV1996]
gi|449216470|gb|EMC16588.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
mutans NV1996]
Length = 361
Score = 198 bits (504), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 118/346 (34%), Positives = 188/346 (54%), Gaps = 34/346 (9%)
Query: 22 GIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKF--KPLTSTLHSVVDSSDDVT 79
G K+ IW ++ ++E +L +LL F PL +V S D T
Sbjct: 21 GEKKFRATQIWDWLYRKHVQSFEEMTNLSKDFIALLNENFLVNPLK---QRIVQESADGT 77
Query: 80 TKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTM 139
K L +L +G +E V+MR L ++C+++QVGC +GC FCA+G +
Sbjct: 78 VKYLFELPDGMLIETVLMRQHYGL--------------SVCVTTQVGCNIGCTFCASGLI 123
Query: 140 GFKSNLSSGEIVEQLVHASRL-------SNIRNVVFMGMGEPLNNYAALVEAVRIMT--- 189
+ +L++GEI Q++ + I +VV MG+GEP +NY +++ +R +
Sbjct: 124 KKQRDLNNGEITAQIMLVQKYFDERGQGERISHVVVMGIGEPFDNYDNVLKFLRTINDDN 183
Query: 190 GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEK 249
GL + + ITVST G+ H I F ++ +NLAVSLHAP ++R IM R+FPLEK
Sbjct: 184 GLA--IGARHITVSTSGLAHKIRDFANEGVQVNLAVSLHAPNNELRSSIMRINRSFPLEK 241
Query: 250 LMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVV--VNLIPFNPIGSV 307
L A++ Y + + +++ EYIML+GVND ++A +L L + + + VNLIP+NP+
Sbjct: 242 LFAAIEYYIETTNRRVTFEYIMLNGVNDNPENAQELADLTKKIRKLSYVNLIPYNPVTEH 301
Query: 308 SQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVN 353
Q+ S ++V +F +L+ + + VR++ G DI ACGQL N
Sbjct: 302 DQYSRSPKERVDAFYDVLKKN-GVNCVVRQEHGTDIDAACGQLRSN 346
>gi|313899948|ref|ZP_07833450.1| 23S rRNA m2A2503 methyltransferase [Clostridium sp. HGF2]
gi|346313780|ref|ZP_08855307.1| cfr family radical SAM enzyme [Erysipelotrichaceae bacterium
2_2_44A]
gi|373122012|ref|ZP_09535879.1| 23S rRNA methyltransferase [Erysipelotrichaceae bacterium 21_3]
gi|422329434|ref|ZP_16410459.1| 23S rRNA methyltransferase [Erysipelotrichaceae bacterium 6_1_45]
gi|312955256|gb|EFR36922.1| 23S rRNA m2A2503 methyltransferase [Clostridium sp. HGF2]
gi|345907635|gb|EGX77345.1| cfr family radical SAM enzyme [Erysipelotrichaceae bacterium
2_2_44A]
gi|371656974|gb|EHO22291.1| 23S rRNA methyltransferase [Erysipelotrichaceae bacterium 6_1_45]
gi|371664991|gb|EHO30160.1| 23S rRNA methyltransferase [Erysipelotrichaceae bacterium 21_3]
Length = 351
Score = 198 bits (504), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 117/339 (34%), Positives = 183/339 (53%), Gaps = 27/339 (7%)
Query: 22 GIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHSVVDSSDDVTTK 81
G K+ I++++ D+ L L+ +F L +SD TTK
Sbjct: 20 GWKKFRAHQIFQWLYRKRAVSIDDMSDLSKDTRETLKQQFSLTPLKLRDKQVASDG-TTK 78
Query: 82 LLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGF 141
L L++G +E+V+M++D GK ++C++SQVGC M C FCA+G
Sbjct: 79 YLFALEDGSLIESVLMQFD--YGK------------SICVTSQVGCNMACAFCASGLTKK 124
Query: 142 KSNLSSGEIVEQLVHASR-----LSNIRNVVFMGMGEPLNNYAALVEAVRIMT---GLPF 193
K NL+SGE+V Q+++ R + ++V MG GEP +NY ++ + + GL
Sbjct: 125 KRNLTSGEMVAQVLYVQRDLDKQEDRLSHIVVMGTGEPFDNYEHVMNFLSTVNHDRGLG- 183
Query: 194 QVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNA 253
+ + IT+ST G+V I +F + NLA+SLHAP ++R ++MP RA+PLE+LM A
Sbjct: 184 -IGARHITISTCGVVPKIYEFAKEHTQYNLAISLHAPNNELRDRLMPVNRAYPLEELMEA 242
Query: 254 LKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTS 313
++ Y + + +++ EYI+L GVND+++H QL KLL+ VNLIP+N + + F+
Sbjct: 243 IQYYARENNRRLTFEYILLRGVNDQKEHVAQLAKLLKGLNAYVNLIPYNAVDE-NGFQGV 301
Query: 314 SDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVV 352
F L +R T+RK+ G DI ACGQL V
Sbjct: 302 DHAHAMVFYDALMKQ-GVRCTIRKEHGADIDAACGQLRV 339
>gi|429201535|ref|ZP_19192993.1| radical SAM enzyme, Cfr family [Streptomyces ipomoeae 91-03]
gi|428662927|gb|EKX62325.1| radical SAM enzyme, Cfr family [Streptomyces ipomoeae 91-03]
Length = 368
Score = 198 bits (504), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 117/325 (36%), Positives = 176/325 (54%), Gaps = 33/325 (10%)
Query: 44 DEFPSLPSAAYSLLRSKFKPLTSTLHSVVDSSDDVTTKLLVKLQNGGFVEAVIMRYDSSL 103
+++ +P+ A + L+ P T+ + + D T K L +L +G VE+V+MRY
Sbjct: 60 EQWTDIPAGARAKLQEALLPELMTVVRHLSTDQDTTRKTLWRLFDGTLVESVLMRYPD-- 117
Query: 104 GKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRL--- 160
R T+CISSQ GC M C FCATG G NLS+ EIV Q+V R
Sbjct: 118 ------------RVTMCISSQAGCGMNCPFCATGQAGLDRNLSTAEIVHQIVDGMRALRD 165
Query: 161 -------SNIRNVVFMGMGEPLNNYAALVEAVRIMT-----GLPFQVSPKRITVSTVGIV 208
+ + N+VFMGMGEPL NY +V A+R +T GL +S + ITVSTVG+V
Sbjct: 166 GEIPGGPARLSNIVFMGMGEPLANYNRVVGAIRRLTDPEPDGL--GLSQRGITVSTVGLV 223
Query: 209 HAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIE 268
AI++F + LA+SLHAP ++R ++P + + ++++A EY S +++ IE
Sbjct: 224 PAIHRFADEGFKCRLAISLHAPDDELRDTLVPVNTRWKVREVLDAGWEYVARSGRRLSIE 283
Query: 269 YIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGS 328
Y ++ +ND+ +LG+LL+ V VNLIP NP + +D+ + + I +
Sbjct: 284 YALIRDINDQAWRGDRLGRLLKGKPVHVNLIPLNPTPGSKWTASRPEDEKAFVEAI--AA 341
Query: 329 YNIRTTVRKQMGQDISGACGQLVVN 353
+ + TVR GQ+I GACGQL
Sbjct: 342 HGVPVTVRDTRGQEIDGACGQLAAT 366
>gi|337281536|ref|YP_004621007.1| cfr family radical SAM enzyme [Streptococcus parasanguinis ATCC
15912]
gi|419800614|ref|ZP_14325887.1| 23S rRNA m2A2503 methyltransferase [Streptococcus parasanguinis
F0449]
gi|335369129|gb|AEH55079.1| cfr family radical SAM enzyme [Streptococcus parasanguinis ATCC
15912]
gi|385694548|gb|EIG25143.1| 23S rRNA m2A2503 methyltransferase [Streptococcus parasanguinis
F0449]
Length = 362
Score = 198 bits (504), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 119/349 (34%), Positives = 191/349 (54%), Gaps = 34/349 (9%)
Query: 19 EKAGIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKF--KPLTSTLHSVVDSSD 76
E+ G K+ IW+++ ++E +L + L +F PL +V S
Sbjct: 18 EENGEKKFRAAQIWEWLYRKRVQSFEEMTNLSKDLIAKLNDQFVVNPLK---QRIVQESA 74
Query: 77 DVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCAT 136
D T K L +L +G +E V+MR L ++C+++QVGC +GC FCA+
Sbjct: 75 DGTVKYLFELPDGMLIETVLMRQHYGL--------------SVCVTTQVGCNIGCTFCAS 120
Query: 137 GTMGFKSNLSSGEIVEQLVHASRLSNIR-------NVVFMGMGEPLNNYAALVEAVRIMT 189
G + + +L++GEIV Q++ + + R ++V MG+GEP +NY +++ +R +
Sbjct: 121 GLIKKQRDLNNGEIVSQIMLVQKYFDERGQDERVSHIVVMGIGEPFDNYNNVLKFIRTVN 180
Query: 190 ---GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFP 246
GL + + ITVST G+ H I F ++ +NLAVSLHAP D+R IM RAFP
Sbjct: 181 DDKGLA--IGARHITVSTSGLAHKIRDFANEGVQVNLAVSLHAPNNDLRSSIMKINRAFP 238
Query: 247 LEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVV--VNLIPFNPI 304
+EKL A++ Y + + +++ EYIML+ VND + A +L +LL+ + + VNLIP+NP+
Sbjct: 239 IEKLFAAIEYYIETTNRRVTFEYIMLNEVNDGVEQALELAELLKNIKKLSYVNLIPYNPV 298
Query: 305 GSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVN 353
Q+ S ++V +F L+ + VR++ G DI ACGQL N
Sbjct: 299 SEHDQYSRSPKERVMAFYDTLKKQ-GVNCVVRQEHGTDIDAACGQLRSN 346
>gi|375309203|ref|ZP_09774484.1| ribosomal RNA large subunit methyltransferase n [Paenibacillus sp.
Aloe-11]
gi|375078512|gb|EHS56739.1| ribosomal RNA large subunit methyltransferase n [Paenibacillus sp.
Aloe-11]
Length = 346
Score = 198 bits (504), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 116/326 (35%), Positives = 178/326 (54%), Gaps = 27/326 (8%)
Query: 32 WKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHSVVD-SSDDVTTKLLVKLQNGG 90
W YV + N +++E +L L +F +T LH + S D T K L L +
Sbjct: 33 WLYV-KRVN-DFNEMTNLSKGLREKLAEQFSFVT--LHEITKLESKDGTVKFLFGLHDDH 88
Query: 91 FVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEI 150
+E VIMR++ +++C+++QVGC++GC FCA+ G K NL++GEI
Sbjct: 89 AIETVIMRHNYG--------------NSICVTTQVGCRIGCTFCASTLGGLKRNLTAGEI 134
Query: 151 VEQLVHASRL-----SNIRNVVFMGMGEPLNNYAALVEAVRIMTGLP-FQVSPKRITVST 204
Q+V A ++ + ++V MG GEP NY A + +R M + + ITVST
Sbjct: 135 TAQVVQAQKILDKTNERVSSIVIMGSGEPFENYEATMTFLRTMIHEKGLNIGQRHITVST 194
Query: 205 VGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQK 264
GIV I KF + +NLA+S+HAP +R ++MP R +P +M+AL+ Y + ++
Sbjct: 195 SGIVPNIYKFADEDTQINLAISIHAPNDALRSKLMPVNRRYPFNDVMDALRYYLAKTGRR 254
Query: 265 IFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKI 324
I EY ++ GVND+ +HA +L +L+ VNLIP N + RTS D + +FQ+I
Sbjct: 255 ISFEYALIGGVNDQAEHAEELADVLKDMLCHVNLIPVNHVPERKYVRTSRSD-IFNFQRI 313
Query: 325 LRGSYNIRTTVRKQMGQDISGACGQL 350
L I T+R++ G DI+ ACGQL
Sbjct: 314 L-ADKGINVTIRREQGHDIAAACGQL 338
>gi|322419007|ref|YP_004198230.1| radical SAM enzyme, Cfr family [Geobacter sp. M18]
gi|320125394|gb|ADW12954.1| radical SAM enzyme, Cfr family [Geobacter sp. M18]
Length = 344
Score = 198 bits (504), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 117/321 (36%), Positives = 185/321 (57%), Gaps = 19/321 (5%)
Query: 31 IWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHSVVDSSDDVTTKLLVKLQNGG 90
I+K++ + ++DE ++ ++L+ + + + V++S+D T K L +L++G
Sbjct: 31 IFKWLYQMDATDFDEMTNVSKEFRAVLKERAE-IGDLSPEAVEASEDGTRKYLFRLKDGA 89
Query: 91 FVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEI 150
VE+V++ P R+TLCISSQVGC M C FC TG+ G NL++ EI
Sbjct: 90 AVESVLI--------------PDEGRNTLCISSQVGCAMKCAFCLTGSFGLSRNLTTAEI 135
Query: 151 VEQLVHASRLSNIRNVVFMGMGEPLNNYAALVEAVRIMTGLP-FQVSPKRITVSTVGIVH 209
V Q+ R + N+VFMGMGEPL+N AA++ AV+I+T FQ+S +++TVST G+V
Sbjct: 136 VNQVCAVKREHPVNNIVFMGMGEPLHNLAAVIPAVQILTDPDGFQLSTRKVTVSTSGLVP 195
Query: 210 AINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEY 269
+ + +NLAVSL+A +VR +IMP R +PL++L+ A K + S++ I +EY
Sbjct: 196 EMAELGRGCT-VNLAVSLNATTDEVRDRIMPINRRYPLKELLAACKAFPLPSRRWITMEY 254
Query: 270 IMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSY 329
+++ +ND A +L +L+ VNLIPFN S F++ + + + F K L +
Sbjct: 255 VLIRDLNDSLDDAKRLVRLISNIPSKVNLIPFNEHDGCS-FKSPTQETIDRFHKYLLDKH 313
Query: 330 NIRTTVRKQMGQDISGACGQL 350
+ R G DIS ACGQL
Sbjct: 314 -VTVITRSSRGGDISAACGQL 333
>gi|398304096|ref|ZP_10507682.1| ribosomal RNA large subunit methyltransferase N [Bacillus
vallismortis DV1-F-3]
Length = 363
Score = 198 bits (504), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 114/328 (34%), Positives = 184/328 (56%), Gaps = 27/328 (8%)
Query: 31 IWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHSVVDSSDDVTTKLLVKLQNGG 90
I++++ E ++E +L L + F LT+ +V +S D T K L +L +G
Sbjct: 45 IFEWLYEKRVSSFEEMTNLSKDLREKLSAHF-VLTTLKTAVKQTSSDGTMKFLFELHDGY 103
Query: 91 FVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEI 150
+E V+MR++ +++C+++QVGC++GC FCA+ G K NL +GEI
Sbjct: 104 TIETVLMRHEYG--------------NSVCVTTQVGCRIGCTFCASTLGGLKRNLEAGEI 149
Query: 151 VEQLVHASRL-----SNIRNVVFMGMGEPLNNYAALVEAVRIMT---GLPFQVSPKRITV 202
V Q+V + + +VV MG+GEP +N+ ++ ++I+ GL + + ITV
Sbjct: 150 VAQVVKVQQALDETDERVSSVVIMGIGEPFDNFEEMLAFLKIINHDNGL--NIGARHITV 207
Query: 203 STVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQ 262
ST GI+ I +F +N A+SLHAP ++R ++MP RA+ L +LM A+K Y +
Sbjct: 208 STSGIIPKIYEFADQKMQINFAISLHAPNTEIRSRLMPINRAYKLPELMEAVKYYINKTG 267
Query: 263 QKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQ 322
++I EY + GVND+ +HA +L LLE + VNLIP N + RT D++ +F+
Sbjct: 268 RRISFEYGLFGGVNDQVEHAEELADLLEGIKCHVNLIPVNYVPERDYVRTPR-DQIFAFE 326
Query: 323 KILRGSYNIRTTVRKQMGQDISGACGQL 350
K L+ S + T+R++ G DI ACGQL
Sbjct: 327 KTLK-SRGVNVTIRREQGHDIDAACGQL 353
>gi|313668447|ref|YP_004048731.1| hypothetical protein NLA_11430 [Neisseria lactamica 020-06]
gi|313005909|emb|CBN87365.1| conserved hypothetical protein [Neisseria lactamica 020-06]
Length = 364
Score = 198 bits (504), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 132/356 (37%), Positives = 190/356 (53%), Gaps = 29/356 (8%)
Query: 12 GIIRAEFEKAGIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHSV 71
G+IR F G K + +++ ++ +DE L + L + L
Sbjct: 12 GLIR-HFADMGEKPFRAKQVMRWIHQSGAQNFDEMTDLAKSLRHKLNEQANIGIPKLMMS 70
Query: 72 VDSSDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGC 131
+SSD T K L+ + G VE V + P R TLCISSQVGC + C
Sbjct: 71 QESSDG-TRKWLLDVGTGNGVETVFI--------------PESERGTLCISSQVGCALEC 115
Query: 132 NFCATGTMGFKSNLSSGEIVEQLVHASRLSN--------IRNVVFMGMGEPLNNYAALVE 183
FC+TG GF NL++ EI+ QL A++ I NVV MGMGEP+ N+ +V
Sbjct: 116 TFCSTGRQGFNRNLTAAEIIGQLWWANKAMGVTPKNERVISNVVMMGMGEPMANFDNVVT 175
Query: 184 AVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAA 242
A+ IM + +S +R+TVST G+V +++ +P + LAVSLHA +VR QI+P
Sbjct: 176 ALSIMLDDHGYGLSRRRVTVSTSGMVPQMDRLRDVMP-VALAVSLHASNDEVRDQIVPLN 234
Query: 243 RAFPLEKLMNALKEYQ-KNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPF 301
+ +PL++LM A + Y K + I EY+MLDG+ND+ QHAH+L L++ NLIPF
Sbjct: 235 KKYPLKELMAACRRYLVKAPRDFITFEYVMLDGINDKAQHAHELINLVKDVPCKFNLIPF 294
Query: 302 NPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDK 357
NP + S + SS + + F+ IL+ + + TVRK G DI ACGQL + DK
Sbjct: 295 NPFPN-SGYERSSKENIRVFKDILQQAGFV-VTVRKTRGDDIDAACGQLAGQVQDK 348
>gi|363891854|ref|ZP_09319029.1| 23S rRNA methyltransferase [Eubacteriaceae bacterium CM2]
gi|402839202|ref|ZP_10887695.1| 23S rRNA m2A2503 methyltransferase [Eubacteriaceae bacterium OBRC8]
gi|361964849|gb|EHL17855.1| 23S rRNA methyltransferase [Eubacteriaceae bacterium CM2]
gi|402270741|gb|EJU19999.1| 23S rRNA m2A2503 methyltransferase [Eubacteriaceae bacterium OBRC8]
Length = 348
Score = 198 bits (503), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 122/349 (34%), Positives = 188/349 (53%), Gaps = 29/349 (8%)
Query: 9 FDGGIIRAEFEKAGIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTL 68
F+ +I FEK KQ + PL++ + +DE ++P L F ++
Sbjct: 16 FEDILISNSFEKYRAKQIY-PLVFDKI-----SSFDEINNIPKKLKEFLNENFCVNPVSI 69
Query: 69 HSVVDSSDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCK 128
+ + S D T K L+KL + +E+V+M+Y L + CISSQVGC
Sbjct: 70 YKKLQSQKDYTKKYLMKLDDDNIIESVLMKYKFGL--------------SACISSQVGCL 115
Query: 129 MGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN--IRNVVFMGMGEPLNNYAALVEAVR 186
MGC FCA+ +L++GE++ Q+V S+ ++ I N+V MG GEP +NY ++ +
Sbjct: 116 MGCTFCASTVNSKIRDLTAGEMIGQIVSMSKDASQRISNIVIMGSGEPFDNYNNFIKFLE 175
Query: 187 IM---TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAAR 243
++ GL + + ITVST GI I F +NLA+SLH+P Q+ R IMP +R
Sbjct: 176 LIGDENGL--NIGQRHITVSTCGIADKIRDFADRKMQINLAISLHSPYQEKRENIMPISR 233
Query: 244 AFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNP 303
F LE+L+ + Y K + ++I EY ++ VND E+ A L KL+ VN+IP N
Sbjct: 234 KFSLEELIKSTDYYIKKTNRRITYEYAIIKNVNDSEKDALALSKLIGHQLCHVNIIPVNS 293
Query: 304 IGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVV 352
S + + ++ K+ F KIL ++ I TVR++MG DI+GACGQL +
Sbjct: 294 -ASHNDYEKPNEQKIKKFLKILSDNH-INATVRREMGSDINGACGQLRI 340
>gi|422821743|ref|ZP_16869936.1| cfr family radical SAM enzyme [Streptococcus sanguinis SK353]
gi|422824102|ref|ZP_16872290.1| cfr family radical SAM enzyme [Streptococcus sanguinis SK405]
gi|422856042|ref|ZP_16902700.1| cfr family radical SAM enzyme [Streptococcus sanguinis SK1]
gi|324990694|gb|EGC22630.1| cfr family radical SAM enzyme [Streptococcus sanguinis SK353]
gi|324993429|gb|EGC25349.1| cfr family radical SAM enzyme [Streptococcus sanguinis SK405]
gi|327461703|gb|EGF08034.1| cfr family radical SAM enzyme [Streptococcus sanguinis SK1]
Length = 362
Score = 198 bits (503), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 119/349 (34%), Positives = 191/349 (54%), Gaps = 34/349 (9%)
Query: 19 EKAGIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKF--KPLTSTLHSVVDSSD 76
E G K+ IW+++ ++E +L + L +F PL +V S
Sbjct: 18 EAQGEKKFRASQIWEWLYRKRVQSFEEMTNLSKDLIAKLNDQFVVNPLK---QRIVQESA 74
Query: 77 DVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCAT 136
D T K L +L +G +E V+MR L ++C+++QVGC +GC FCA+
Sbjct: 75 DGTVKYLFELPDGMLIETVLMRQHYGL--------------SVCVTTQVGCNIGCTFCAS 120
Query: 137 GTMGFKSNLSSGEIVEQLVHASRLSNIR-------NVVFMGMGEPLNNYAALVEAVRIMT 189
G + + +L++GEIV Q++ + + R ++V MG+GEP +NY +++ VR +
Sbjct: 121 GLIKKQRDLNNGEIVAQIMLVQKYFDERGQDERVSHIVVMGIGEPFDNYDNVLKFVRTVN 180
Query: 190 ---GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFP 246
GL + + ITVST G+ H I F ++ +NLAVSLHAP D+R IM R+FP
Sbjct: 181 DDKGLA--IGARHITVSTSGLAHKIRDFANEGVQVNLAVSLHAPNNDLRTSIMRINRSFP 238
Query: 247 LEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVV--VNLIPFNPI 304
+EKL A++ Y + + +++ EYIML+ VND + A +L +LL+ + + VNLIP+NP+
Sbjct: 239 IEKLFAAIEYYIETTNRRVTFEYIMLNEVNDGVEQAKELAELLKNIKKLSYVNLIPYNPV 298
Query: 305 GSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVN 353
Q+ S ++V +F L+ + + VR++ G DI ACGQL N
Sbjct: 299 SEHDQYSRSPKERVMAFYDTLKKN-GVNCVVRQEHGTDIDAACGQLRSN 346
>gi|125717485|ref|YP_001034618.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
sanguinis SK36]
gi|262282762|ref|ZP_06060530.1| cfr family radical SAM enzyme [Streptococcus sp. 2_1_36FAA]
gi|401682340|ref|ZP_10814234.1| 23S rRNA m2A2503 methyltransferase [Streptococcus sp. AS14]
gi|422853733|ref|ZP_16900397.1| cfr family radical SAM enzyme [Streptococcus sanguinis SK160]
gi|422859010|ref|ZP_16905660.1| cfr family radical SAM enzyme [Streptococcus sanguinis SK1057]
gi|422863122|ref|ZP_16909754.1| cfr family radical SAM enzyme [Streptococcus sanguinis SK408]
gi|422871436|ref|ZP_16917929.1| cfr family radical SAM enzyme [Streptococcus sanguinis SK1087]
gi|422883583|ref|ZP_16930032.1| cfr family radical SAM enzyme [Streptococcus sanguinis SK49]
gi|205829909|sp|A3CLL3.1|RLMN_STRSV RecName: Full=Probable dual-specificity RNA methyltransferase RlmN;
AltName: Full=23S rRNA
(adenine(2503)-C(2))-methyltransferase; AltName:
Full=23S rRNA m2A2503 methyltransferase; AltName:
Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=tRNA (adenine(37)-C(2))-methyltransferase;
AltName: Full=tRNA m2A37 methyltransferase
gi|125497402|gb|ABN44068.1| Fe-S-cluster redox enzyme/radical SAM enzyme, Cfr family, putative
[Streptococcus sanguinis SK36]
gi|262262053|gb|EEY80751.1| cfr family radical SAM enzyme [Streptococcus sp. 2_1_36FAA]
gi|325697044|gb|EGD38931.1| cfr family radical SAM enzyme [Streptococcus sanguinis SK160]
gi|327458790|gb|EGF05138.1| cfr family radical SAM enzyme [Streptococcus sanguinis SK1057]
gi|327473422|gb|EGF18842.1| cfr family radical SAM enzyme [Streptococcus sanguinis SK408]
gi|328945604|gb|EGG39755.1| cfr family radical SAM enzyme [Streptococcus sanguinis SK1087]
gi|332362856|gb|EGJ40649.1| cfr family radical SAM enzyme [Streptococcus sanguinis SK49]
gi|400184776|gb|EJO19014.1| 23S rRNA m2A2503 methyltransferase [Streptococcus sp. AS14]
Length = 362
Score = 198 bits (503), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 119/349 (34%), Positives = 191/349 (54%), Gaps = 34/349 (9%)
Query: 19 EKAGIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKF--KPLTSTLHSVVDSSD 76
E G K+ IW+++ ++E +L + L +F PL +V S
Sbjct: 18 EAQGEKKFRAAQIWEWLYRKRVQSFEEMTNLSKDLIAKLNDQFVVNPLK---QRIVQESA 74
Query: 77 DVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCAT 136
D T K L +L +G +E V+MR L ++C+++QVGC +GC FCA+
Sbjct: 75 DGTVKYLFELPDGMLIETVLMRQHYGL--------------SVCVTTQVGCNIGCTFCAS 120
Query: 137 GTMGFKSNLSSGEIVEQLVHASRLSNIR-------NVVFMGMGEPLNNYAALVEAVRIMT 189
G + + +L++GEIV Q++ + + R ++V MG+GEP +NY +++ VR +
Sbjct: 121 GLIKKQRDLNNGEIVAQIMLVQKYFDERGQDERVSHIVVMGIGEPFDNYDNVLKFVRTVN 180
Query: 190 ---GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFP 246
GL + + ITVST G+ H I F ++ +NLAVSLHAP D+R IM R+FP
Sbjct: 181 DDKGLA--IGARHITVSTSGLAHKIRDFANEGVQVNLAVSLHAPNNDLRTSIMRINRSFP 238
Query: 247 LEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVV--VNLIPFNPI 304
+EKL A++ Y + + +++ EYIML+ VND + A +L +LL+ + + VNLIP+NP+
Sbjct: 239 IEKLFAAIEYYIETTNRRVTFEYIMLNEVNDGVEQAKELAELLKNIKKLSYVNLIPYNPV 298
Query: 305 GSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVN 353
Q+ S ++V +F L+ + + VR++ G DI ACGQL N
Sbjct: 299 SEHDQYSRSPKERVMAFYDTLKKN-GVNCVVRQEHGTDIDAACGQLRSN 346
>gi|428302049|ref|YP_007140355.1| 23S rRNA m(2)A-2503 methyltransferase [Calothrix sp. PCC 6303]
gi|428238593|gb|AFZ04383.1| 23S rRNA m(2)A-2503 methyltransferase [Calothrix sp. PCC 6303]
Length = 365
Score = 198 bits (503), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 122/301 (40%), Positives = 172/301 (57%), Gaps = 21/301 (6%)
Query: 63 PLTSTLHSVVDSSDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYN---GKPRPGGP---- 115
P+ + + D T K L+KL +G VE V G N GK P G
Sbjct: 74 PVGRSTEHFRSQARDGTVKYLLKLADGEIVETV--------GIPNFKWGKNVPTGDASNL 125
Query: 116 -RSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQL--VHASRLSNIRNVVFMGMG 172
R T+C+S+QVGC M C+FCATG GFK NL+ EIV+Q+ V + N+VFMGMG
Sbjct: 126 DRLTVCVSTQVGCPMACDFCATGKGGFKRNLTRAEIVDQVLTVQEDFKERVSNIVFMGMG 185
Query: 173 EPLNNYAALVEAVRIMTGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQ 232
EPL N ++ A+ + + + +TVSTVGI I +F + LAVSLHAP Q
Sbjct: 186 EPLLNVNHVLGAIHCLNK-DVGIGQRNLTVSTVGIRDRIRQFAQHHLQVTLAVSLHAPNQ 244
Query: 233 DVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETF 292
+R Q++P+A ++P+ LM +EY + + ++I EY++L GVND +HA +L +LL F
Sbjct: 245 RLRQQLIPSANSYPIGDLMAECREYVEITGRRITFEYVLLAGVNDLPEHAAELARLLRGF 304
Query: 293 QVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVV 352
Q VNLIP+NPI V R S D++++F +IL+ + I +VR G + ACGQL V
Sbjct: 305 QNHVNLIPYNPINEVDYQRPES-DRINAFVQILQQQH-ITVSVRYSRGLEADAACGQLRV 362
Query: 353 N 353
N
Sbjct: 363 N 363
>gi|416350349|ref|ZP_11680856.1| ribosomal RNA large subunit methyltransferase N [Clostridium
botulinum C str. Stockholm]
gi|338196306|gb|EGO88507.1| ribosomal RNA large subunit methyltransferase N [Clostridium
botulinum C str. Stockholm]
Length = 343
Score = 198 bits (503), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 108/326 (33%), Positives = 184/326 (56%), Gaps = 19/326 (5%)
Query: 31 IWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHSVVDSSDDVTTKLLVKLQNGG 90
I++++ + + E ++ A+ L++ F + S+ D T K L + ++G
Sbjct: 29 IFEWIYKKSAFSFHEMTNISKASKEKLKNSFYIEIPNIIKKYKSNIDGTEKFLFEYKDGN 88
Query: 91 FVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEI 150
+E V+MRY +++C+S+Q+GC+MGC FCA+ G NL+SGEI
Sbjct: 89 IIECVVMRYKHG--------------NSICVSTQIGCRMGCKFCASTVEGVVRNLTSGEI 134
Query: 151 VEQLVHASRL--SNIRNVVFMGMGEPLNNYAALVEAVRIMTG-LPFQVSPKRITVSTVGI 207
V Q++ A + I NVV MG GEPL+NY +V+ ++++ ++ + IT+ST GI
Sbjct: 135 VAQILKAQQEIGERISNVVLMGSGEPLDNYDNVVKFIKLINDDNALKIGQRHITLSTCGI 194
Query: 208 VHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFI 267
V + + + + LA+SLHAP ++R +MP A + +++L++A K Y + + ++I
Sbjct: 195 VPKVKELADEKLQITLAISLHAPNDEIRKSMMPVANKYNIKELLDACKYYSRITNRRITF 254
Query: 268 EYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRG 327
EY +++G+ND ++A +L L+ VNLIP N I + ++ S + F+ IL
Sbjct: 255 EYALVNGINDSAKNAEELFNQLKGILCHVNLIPVNEIKE-NDYKRSRAKNIEEFKNILI- 312
Query: 328 SYNIRTTVRKQMGQDISGACGQLVVN 353
Y I TT+R++MG DI+GACGQL N
Sbjct: 313 KYGIETTIRREMGSDINGACGQLRRN 338
>gi|430760187|ref|YP_007216044.1| Ribosomal RNA large subunit methyltransferase N [Thioalkalivibrio
nitratireducens DSM 14787]
gi|430009811|gb|AGA32563.1| Ribosomal RNA large subunit methyltransferase N [Thioalkalivibrio
nitratireducens DSM 14787]
Length = 377
Score = 198 bits (503), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 115/294 (39%), Positives = 168/294 (57%), Gaps = 28/294 (9%)
Query: 75 SDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFC 134
SDD T K +++L +G +E V + P R TLCISSQVGC + C FC
Sbjct: 79 SDDGTVKWVLRLADGNAIETVYI--------------PEDDRGTLCISSQVGCALDCTFC 124
Query: 135 ATGTMGFKSNLSSGEIVEQL--------VHASRLSNIRNVVFMGMGEPLNNYAALVEAVR 186
+T GF NLS+ EI+ QL V R + NVVFMGMGEPL N A+V+A+
Sbjct: 125 STAQQGFNRNLSAHEIIGQLWLANQRVPVPEGRSRAVTNVVFMGMGEPLANLDAVVDAID 184
Query: 187 IM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAF 245
+M + +S +R+TVST G+V A+++ + + LAVSLHAP +R +++P R +
Sbjct: 185 LMLDDNAYGLSKRRVTVSTSGLVPALDRLGA-ATDVALAVSLHAPNDALRNRLVPINRKY 243
Query: 246 PLEKLMNALKEYQKNS--QQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNP 303
P+ +L+NA + Y ++ ++ EY++L G+ND+ +HA +L LL +NLIPFNP
Sbjct: 244 PIHELLNACRRYTRDGARHHRVTFEYVLLAGINDQPRHARELMALLRDVPCKINLIPFNP 303
Query: 304 IGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDK 357
S F S + V F+K+L + + T VR+ G DI ACGQLV + D+
Sbjct: 304 FPG-SPFVRPSSNAVRVFEKLLDDAGFV-TIVRRTRGDDIDAACGQLVGEVADR 355
>gi|422881739|ref|ZP_16928195.1| cfr family radical SAM enzyme [Streptococcus sanguinis SK355]
gi|332363981|gb|EGJ41760.1| cfr family radical SAM enzyme [Streptococcus sanguinis SK355]
Length = 362
Score = 198 bits (503), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 119/349 (34%), Positives = 191/349 (54%), Gaps = 34/349 (9%)
Query: 19 EKAGIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKF--KPLTSTLHSVVDSSD 76
E G K+ IW+++ ++E +L + L +F PL +V S
Sbjct: 18 EAQGEKKFRAAQIWEWLYRKRVQSFEEMTNLSKDLIAKLNDQFVVNPLE---QRIVQESA 74
Query: 77 DVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCAT 136
D T K L +L +G +E V+MR L ++C+++QVGC +GC FCA+
Sbjct: 75 DGTVKYLFELPDGMLIETVLMRQHYGL--------------SVCVTTQVGCNIGCTFCAS 120
Query: 137 GTMGFKSNLSSGEIVEQLVHASRLSNIR-------NVVFMGMGEPLNNYAALVEAVRIMT 189
G + + +L++GEIV Q++ + + R ++V MG+GEP +NY +++ VR +
Sbjct: 121 GLIKKQRDLNNGEIVAQIMLVQKYFDERGQDERVSHIVVMGIGEPFDNYDNVLKFVRTVN 180
Query: 190 ---GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFP 246
GL + + ITVST G+ H I F ++ +NLAVSLHAP D+R IM R+FP
Sbjct: 181 DDKGLA--IGARHITVSTSGLAHKIRDFANEGVQVNLAVSLHAPNNDLRTSIMRINRSFP 238
Query: 247 LEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVV--VNLIPFNPI 304
+EKL A++ Y + + +++ EYIML+ VND + A +L +LL+ + + VNLIP+NP+
Sbjct: 239 IEKLFAAIEYYIETTNRRVTFEYIMLNEVNDGVEQAKELAELLKNIKKLSYVNLIPYNPV 298
Query: 305 GSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVN 353
Q+ S ++V +F L+ + + VR++ G DI ACGQL N
Sbjct: 299 SEHDQYSRSPKERVMAFYDTLKKN-GVNCVVRQEHGTDIDAACGQLRSN 346
>gi|239636303|ref|ZP_04677305.1| radical SAM enzyme, Cfr family [Staphylococcus warneri L37603]
gi|445059862|ref|YP_007385266.1| ribosomal RNA large subunit methyltransferase N [Staphylococcus
warneri SG1]
gi|239597658|gb|EEQ80153.1| radical SAM enzyme, Cfr family [Staphylococcus warneri L37603]
gi|443425919|gb|AGC90822.1| ribosomal RNA large subunit methyltransferase N [Staphylococcus
warneri SG1]
Length = 364
Score = 198 bits (503), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 111/313 (35%), Positives = 172/313 (54%), Gaps = 23/313 (7%)
Query: 44 DEFPSLPSAAYSLLRSKFKPLTSTLHSVVDSSDDVTTKLLVKLQNGGFVEAVIMRYDSSL 103
DE +L LL+ F +T+ V S D T K L +LQ+G +E V+MR++
Sbjct: 59 DEMTNLSKDLRQLLKDNF-AMTTLTTVVKQESRDGTIKFLFELQDGYTIETVLMRHEYG- 116
Query: 104 GKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRL--- 160
+++C+++QVGC++GC FCA+ G K NL +GEIV Q++ +
Sbjct: 117 -------------NSVCVTTQVGCRIGCTFCASTLGGLKRNLEAGEIVSQVLTVQKALDE 163
Query: 161 --SNIRNVVFMGMGEPLNNYAALVEAVRIMTGL-PFQVSPKRITVSTVGIVHAINKFHSD 217
+ +V MG+GEP NY +++ +RI+ + + ITVST GI+ I F +
Sbjct: 164 TEERVSQIVIMGIGEPFENYDEMMDFLRIVNDDNSLNIGARHITVSTSGIIPRIYDFAEE 223
Query: 218 LPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVND 277
+N AVSLH +VR ++MP RA+ +EKLM A++ YQ+ + ++I EY + GVND
Sbjct: 224 DIQINFAVSLHGAKDEVRSRLMPINRAYNVEKLMEAIEYYQEKTNRRITFEYGLFGGVND 283
Query: 278 EEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRK 337
+ +HA L L++ VNLIP N + + +T DD + F+K L+ I T+R+
Sbjct: 284 QLEHARDLAHLIKGLNCHVNLIPVNHVPERNYVKTPKDD-IFKFEKELK-RLGINATIRR 341
Query: 338 QMGQDISGACGQL 350
+ G DI ACGQL
Sbjct: 342 EQGSDIDAACGQL 354
>gi|298490256|ref|YP_003720433.1| radical SAM enzyme, Cfr family ['Nostoc azollae' 0708]
gi|298232174|gb|ADI63310.1| radical SAM enzyme, Cfr family ['Nostoc azollae' 0708]
Length = 356
Score = 198 bits (503), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 114/287 (39%), Positives = 169/287 (58%), Gaps = 20/287 (6%)
Query: 66 STLHSVVDSSDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQV 125
S+LH + DD T K L+KL +G +E V + P R T+C+S+QV
Sbjct: 83 SSLHYRAVAPDD-TVKYLLKLADGEIIETVGI--------------PSHKRLTVCVSTQV 127
Query: 126 GCKMGCNFCATGTMGFKSNLSSGEIVEQL--VHASRLSNIRNVVFMGMGEPLNNYAALVE 183
GC M C+FCATG G+K NLS GEIV+Q+ V + NVVFMG+GEPL N ++
Sbjct: 128 GCPMACDFCATGKGGYKRNLSRGEIVDQVLTVQEDFQQRVSNVVFMGLGEPLLNTENVIL 187
Query: 184 AVRIMTGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAAR 243
A++ + + + +T+STVGI I++ + LAVSLHAP Q +R Q++P+A+
Sbjct: 188 ALKALNE-DVGIGQRSLTISTVGIRDRIHQLAQHHLQITLAVSLHAPNQALREQLIPSAK 246
Query: 244 AFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNP 303
+P+E L+N +EY + + +++ EYI+L GVND + A +L K L FQ VNLIP+NP
Sbjct: 247 PYPIEDLLNECREYVEITGRRVTFEYILLAGVNDLPEQALELSKRLRGFQSHVNLIPYNP 306
Query: 304 IGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 350
I V ++ + D++ +F +L+ NI +VR G + ACGQL
Sbjct: 307 IEEVD-YKRPNRDRIQAFVNVLQ-QQNITVSVRYSRGLEADAACGQL 351
>gi|392956472|ref|ZP_10321999.1| RlmN2 [Bacillus macauensis ZFHKF-1]
gi|391877454|gb|EIT86047.1| RlmN2 [Bacillus macauensis ZFHKF-1]
Length = 352
Score = 198 bits (503), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 112/330 (33%), Positives = 180/330 (54%), Gaps = 26/330 (7%)
Query: 31 IWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHSVVDSSDDVTTKLLVKLQNGG 90
+W+Y+ ++ + LL F T T H V S D T K L +LQ+G
Sbjct: 30 VWEYLYRTRVTDFSLMTDVNPDCIQLLSEHFVIETMTQH-VKQESQDGTIKFLFRLQDGN 88
Query: 91 FVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEI 150
+E V+MR+ L ++C+++QVGC +GC+FCA+G + +LS GE+
Sbjct: 89 LIETVLMRHKYGL--------------SVCVTTQVGCNIGCSFCASGLLAKSRDLSGGEV 134
Query: 151 VEQLVHAS-------RLSNIRNVVFMGMGEPLNNYAALVEAVRIMTGLP-FQVSPKRITV 202
VEQ++ + ++V MG+GEP +N+ + + I+T V+ +RITV
Sbjct: 135 VEQIMRVQLELDARGEQEKVTHIVVMGIGEPFDNFENMKNFIHIITDHKGLAVAARRITV 194
Query: 203 STVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQ 262
ST G+ + +F +NLA+SLHAP ++R +IM +A PLE LM A+ Y + +
Sbjct: 195 STSGLAKKMREFADSGLQVNLALSLHAPNNELRTKIMKINKAIPLEPLMEAVDYYLEKTN 254
Query: 263 QKIFIEYIMLDGVNDEEQHAHQLGKLL--ETFQVVVNLIPFNPIGSVSQFRTSSDDKVSS 320
+++ IEYI+L VND ++ A +L +LL + ++ VNLIP+NP+ SQ++ S + V
Sbjct: 255 RRLTIEYILLRDVNDHKKEALELAQLLHDKKKRLYVNLIPYNPVDEHSQYQRSEERSVLE 314
Query: 321 FQKILRGSYNIRTTVRKQMGQDISGACGQL 350
F L+ + I +R++ G DI ACGQL
Sbjct: 315 FYDTLKKN-GINCKIRQEHGSDIDAACGQL 343
>gi|325297954|ref|YP_004257871.1| ribosomal RNA large subunit methyltransferase N [Bacteroides
salanitronis DSM 18170]
gi|324317507|gb|ADY35398.1| Ribosomal RNA large subunit methyltransferase N [Bacteroides
salanitronis DSM 18170]
Length = 348
Score = 198 bits (503), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 115/308 (37%), Positives = 173/308 (56%), Gaps = 19/308 (6%)
Query: 44 DEFPSLPSAAYSLLRSKFKPLTSTLHSVVDSSDDVTTKLLVKLQNGGFVEAVIMRYDSSL 103
DE +L LL+ ++ + + L S D T K L + G FVE+V +
Sbjct: 43 DEMTNLSLRNRELLKEHYE-VGAALPVHAMRSADGTVKYLFRTPEGNFVESVYI------ 95
Query: 104 GKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSNI 163
P G R+TLC+SSQVGCKM C FC TG G+ +L+ +I+ Q+ ++
Sbjct: 96 --------PDGERATLCVSSQVGCKMNCKFCMTGKQGYAGSLTVTQILNQIYSIPERDSL 147
Query: 164 RNVVFMGMGEPLNNYAALVEAVRIMTG-LPFQVSPKRITVSTVGIVHAINKFHSDLPGLN 222
NVVFMGMGEP +N A++ A+ I+T + SPKRITVSTVG+ + +F ++ +
Sbjct: 148 TNVVFMGMGEPFDNLDAVLRALEILTSDYGYAWSPKRITVSTVGLRRGLERFLAE-SDCH 206
Query: 223 LAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHA 282
LAVSLH+P R ++MPA RAFP+ +++N L+ Y + Q+++ EYI+ GVND +A
Sbjct: 207 LAVSLHSPFPSQRAELMPAERAFPITEIVNVLRNYDFSKQRRLSFEYILFGGVNDSLVYA 266
Query: 283 HQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQD 342
+L KLL +NLI F+ I V + + + +++F+ L + I T+R G+D
Sbjct: 267 KELVKLLRGLDCRINLIRFHAIPGVD-LQGADMETMTAFRDYLT-KHGIFATIRASRGED 324
Query: 343 ISGACGQL 350
I ACG L
Sbjct: 325 IFAACGML 332
>gi|313680864|ref|YP_004058603.1| 23S rRNA m(2)a-2503 methyltransferase [Oceanithermus profundus DSM
14977]
gi|313153579|gb|ADR37430.1| 23S rRNA m(2)A-2503 methyltransferase [Oceanithermus profundus DSM
14977]
Length = 370
Score = 198 bits (503), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 119/318 (37%), Positives = 166/318 (52%), Gaps = 23/318 (7%)
Query: 42 EWDEFPSLPSAAYSLLRSKFKPLTSTLHSVVDSSDDVTTKLLVKLQNGGFVEAVIMRYDS 101
E++E LP L ++ L SSD + K L L +G EAV + Y
Sbjct: 68 EFEEMTDLPRRLREALEQDWRISEFALVQAFPSSDG-SVKYLFTLHDGRRTEAVYLPYAD 126
Query: 102 SLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLS 161
R T+CISSQVGC GC FCATG MGF NL+ EI++Q++ +
Sbjct: 127 --------------RKTVCISSQVGCPAGCTFCATGKMGFGRNLTGPEILDQILAVAYHQ 172
Query: 162 N-----IRNVVFMGMGEPLNNYAALVEAVRIMTGL-PFQVSPKRITVSTVGIVHAINKFH 215
IRNVV MGMGEPL NY + AVR M +SP+RIT+STVGI I +
Sbjct: 173 GLGPREIRNVVLMGMGEPLLNYENIAWAVRRMLDKNALAMSPRRITLSTVGIPGGIRRLA 232
Query: 216 SDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGV 275
G+ LA+SLHAP + R +I+P A + + ++M A++ Y +++++ IEY ML V
Sbjct: 233 EGDLGVKLALSLHAPDDETRRRIIPTAHRYSIAEIMEAVRAYFDRTKRRVTIEYTMLRDV 292
Query: 276 NDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTV 335
ND E+ A +L ++L+ VNLIPFNP + S ++ F +L + TV
Sbjct: 293 NDREEQARELARILKGLVAHVNLIPFNPWEG-APVAGSGKKRIQRFAAVLE-REGVPVTV 350
Query: 336 RKQMGQDISGACGQLVVN 353
R G D+ ACGQL +
Sbjct: 351 RWSRGVDVGAACGQLALK 368
>gi|289548506|ref|YP_003473494.1| radical SAM enzyme, Cfr family [Thermocrinis albus DSM 14484]
gi|289182123|gb|ADC89367.1| radical SAM enzyme, Cfr family [Thermocrinis albus DSM 14484]
Length = 347
Score = 198 bits (503), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 125/344 (36%), Positives = 192/344 (55%), Gaps = 25/344 (7%)
Query: 14 IRAEFEKAGIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHSVVD 73
+R E G++++ I +V + ++ ++ +L +F T + V+
Sbjct: 12 LREEVVSLGLERYRADQILNWVYKKGVTDFSLMTNISKRDRQVLAERFSFHTLQMIDKVE 71
Query: 74 SSDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNF 133
+ D V K L K ++G VE V+++ L TLC+SSQVGC +GC+F
Sbjct: 72 APDSV--KYLFKTEDGHTVETVLIKERDHL--------------TLCVSSQVGCAVGCSF 115
Query: 134 CATGTMGFKSNLSSGEIVEQLVHASRLS--NIRNVVFMGMGEPLNNYAALVEAVRIMTG- 190
CAT G NL + EI++Q + + S IRNVVFMGMGEPL NY + +AV++M
Sbjct: 116 CATARDGLLRNLRTEEIIDQFIQVQKDSPQRIRNVVFMGMGEPLANYENVRKAVKVMISP 175
Query: 191 LPFQVSPKRITVSTVGIVHAINKFHSD--LPGLNLAVSLHAPVQDVRCQIMPAARAFPLE 248
+S +R++VST GI+ + K D + LNLAVS++AP Q++R +IMP ++ PL
Sbjct: 176 WGLDLSKRRVSVSTSGIISQLKKMAQDPVMRELNLAVSINAPSQELRERIMPISKTNPLH 235
Query: 249 KLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLE--TFQVVVNLIPFNPIGS 306
+LM L +Y ++I +EY++++ VNDE +HA QL +LL+ + VNLIP+NP
Sbjct: 236 ELMEVLYQYPYPPDRRIMLEYVLIEKVNDEPEHALQLAQLLKGNPKKFKVNLIPYNPDPE 295
Query: 307 VSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 350
+ +R ++V FQKIL + I T VR G + GACGQL
Sbjct: 296 LP-YRRPPLERVYRFQKILWDN-GISTFVRFSKGVQVFGACGQL 337
>gi|443623804|ref|ZP_21108293.1| putative Ribosomal RNA large subunit methyltransferase N
[Streptomyces viridochromogenes Tue57]
gi|443342669|gb|ELS56822.1| putative Ribosomal RNA large subunit methyltransferase N
[Streptomyces viridochromogenes Tue57]
Length = 368
Score = 198 bits (503), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 117/325 (36%), Positives = 176/325 (54%), Gaps = 33/325 (10%)
Query: 44 DEFPSLPSAAYSLLRSKFKPLTSTLHSVVDSSDDVTTKLLVKLQNGGFVEAVIMRYDSSL 103
+E+ +P+ A + LR + P T+ + + T K L +L +G VE+V+MRY
Sbjct: 60 EEWTDIPAGARAKLREELFPELMTVVRHLSTDQGTTRKTLWRLFDGTLVESVLMRYPD-- 117
Query: 104 GKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRL--- 160
R T+CISSQ GC M C FCATG G NLS+ EIV Q+V R
Sbjct: 118 ------------RVTMCISSQAGCGMNCPFCATGQAGLDRNLSTAEIVHQIVDGMRALRD 165
Query: 161 -------SNIRNVVFMGMGEPLNNYAALVEAVRIMT-----GLPFQVSPKRITVSTVGIV 208
+ + N+VFMGMGEPL NY +V A+R +T GL +S + ITVSTVG+V
Sbjct: 166 GEVPGGPARLSNIVFMGMGEPLANYNRVVGAIRRLTDPEPDGL--GLSQRGITVSTVGLV 223
Query: 209 HAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIE 268
AI++F + LA+SLHAP ++R ++P + + ++++A EY S +++ IE
Sbjct: 224 PAIHRFADEGFKCRLAISLHAPDDELRDTLVPVNTRWKVREVLDAGFEYVAKSGRRLSIE 283
Query: 269 YIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGS 328
Y ++ +ND+ +LG+LL+ V VNLIP NP + +D+ + + I +
Sbjct: 284 YALIRDINDQAWRGDRLGRLLKGRPVHVNLIPLNPTPGSKWTASRPEDEKAFVEAI--AA 341
Query: 329 YNIRTTVRKQMGQDISGACGQLVVN 353
+ + T+R GQ+I GACGQL
Sbjct: 342 HGVPVTIRDTRGQEIDGACGQLAAT 366
>gi|400289308|ref|ZP_10791338.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
ratti FA-1 = DSM 20564]
gi|399922267|gb|EJN95081.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
ratti FA-1 = DSM 20564]
Length = 361
Score = 198 bits (503), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 119/355 (33%), Positives = 192/355 (54%), Gaps = 34/355 (9%)
Query: 22 GIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKF--KPLTSTLHSVVDSSDDVT 79
G K+ IW ++ ++E ++ +LL F PL +V S D T
Sbjct: 21 GEKKFRATQIWDWLYRKRVQSFEEMTNISKDFIALLNENFVVNPLK---QRIVQESADGT 77
Query: 80 TKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTM 139
K L +L +G +E V+MR L ++C+++QVGC +GC FCA+G +
Sbjct: 78 VKYLFELPDGMLIETVLMRQHYGL--------------SVCVTTQVGCNIGCTFCASGLI 123
Query: 140 GFKSNLSSGEIVEQLVHASRLSNIR-------NVVFMGMGEPLNNYAALVEAVRIMT--- 189
+ +L++GEI Q++ + + R +VV MG+GEP +NY +++ +R +
Sbjct: 124 KKQRDLNNGEITAQIMLVQKYFDERGQGERVSHVVVMGIGEPFDNYDNVLKFLRTINDDN 183
Query: 190 GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEK 249
GL + + ITVST G+ H I F ++ +NLAVSLHAP ++R IM R+FPLEK
Sbjct: 184 GLA--IGARHITVSTSGLAHKIRDFANEGVQVNLAVSLHAPNNELRSSIMRINRSFPLEK 241
Query: 250 LMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVV--VNLIPFNPIGSV 307
L A++ Y + + +++ EYIML+GVND ++A +L L + + + VNLIP+NP+
Sbjct: 242 LFAAIEYYIETTNRRVTFEYIMLNGVNDHPENAQELADLTKKIRKLSYVNLIPYNPVTEH 301
Query: 308 SQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDKISAKS 362
Q+ S ++V +F +L+ + + VR++ G DI ACGQL N + KS
Sbjct: 302 DQYSRSPKERVDAFYDVLKKN-GVNCVVRQEHGTDIDAACGQLRSNTMKRDRQKS 355
>gi|406884801|gb|EKD32142.1| hypothetical protein ACD_77C00170G0008 [uncultured bacterium]
Length = 343
Score = 198 bits (503), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 108/277 (38%), Positives = 161/277 (58%), Gaps = 18/277 (6%)
Query: 75 SDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFC 134
S D T K L NG +E+V++ P R+TLC+SSQ GCKMGC FC
Sbjct: 73 SVDGTKKYLFPTLNGSTIESVMI--------------PEEERATLCVSSQSGCKMGCLFC 118
Query: 135 ATGTMGFKSNLSSGEIVEQLVHASRLSNIRNVVFMGMGEPLNNYAALVEAVRIMTG-LPF 193
T +GF +LS+GEI+ Q ++ + NVV+MGMGEPL+N + +++ I+T F
Sbjct: 119 MTAKLGFNGHLSAGEIISQFINIEESEKLTNVVYMGMGEPLDNATEVFKSIEILTADWGF 178
Query: 194 QVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNA 253
SPKRIT+ST+G+ A+ +F + +LAVSLH P +D R Q+MP +A+P+ + ++
Sbjct: 179 GWSPKRITLSTIGVYPALKEFLEN-SKCHLAVSLHNPFEDERMQLMPMQKAYPIAETISL 237
Query: 254 LKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTS 313
+K Y Q+++ EYIM +G ND ++HA L ++L + +NLI F+ I S + S
Sbjct: 238 IKNYDFTGQRRVSFEYIMFNGWNDTKRHADGLIRMLRGLECRINLIRFHEIPDFS-LKAS 296
Query: 314 SDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 350
+ FQ L + + TT+R G+DI ACGQL
Sbjct: 297 PLGMIEHFQSRLNKA-GLITTIRSSRGEDILAACGQL 332
>gi|422860666|ref|ZP_16907310.1| cfr family radical SAM enzyme [Streptococcus sanguinis SK330]
gi|327469049|gb|EGF14521.1| cfr family radical SAM enzyme [Streptococcus sanguinis SK330]
Length = 362
Score = 198 bits (503), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 119/349 (34%), Positives = 191/349 (54%), Gaps = 34/349 (9%)
Query: 19 EKAGIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKF--KPLTSTLHSVVDSSD 76
E G K+ IW+++ ++E +L + L +F PL +V S
Sbjct: 18 EAQGEKKFRAAQIWEWLYRKRVQSFEEMTNLSKDLIAKLNDQFAVNPLK---QRIVQESA 74
Query: 77 DVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCAT 136
D T K L +L +G +E V+MR L ++C+++QVGC +GC FCA+
Sbjct: 75 DGTVKYLFELPDGMLIETVLMRQHYGL--------------SVCVTTQVGCNIGCTFCAS 120
Query: 137 GTMGFKSNLSSGEIVEQLVHASRLSNIR-------NVVFMGMGEPLNNYAALVEAVRIMT 189
G + + +L++GEIV Q++ + + R ++V MG+GEP +NY +++ VR +
Sbjct: 121 GLIKKQRDLNNGEIVAQIMLVQKYFDERGQDERVSHIVVMGIGEPFDNYDNVLKFVRTVN 180
Query: 190 ---GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFP 246
GL + + ITVST G+ H I F ++ +NLAVSLHAP D+R IM R+FP
Sbjct: 181 DDKGLA--IGARHITVSTSGLAHKIRDFANEGVQVNLAVSLHAPNNDLRTSIMRINRSFP 238
Query: 247 LEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVV--VNLIPFNPI 304
+EKL A++ Y + + +++ EYIML+ VND + A +L +LL+ + + VNLIP+NP+
Sbjct: 239 IEKLFAAIEYYIETTNRRVTFEYIMLNEVNDGVEQAKELAELLKNIKKLSYVNLIPYNPV 298
Query: 305 GSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVN 353
Q+ S ++V +F L+ + + VR++ G DI ACGQL N
Sbjct: 299 SEHDQYSRSPKERVMAFYDTLKKN-GVNCVVRQEHGTDIDAACGQLRSN 346
>gi|315301572|ref|ZP_07872683.1| radical SAM enzyme, Cfr family, partial [Listeria ivanovii FSL
F6-596]
gi|313630054|gb|EFR98076.1| radical SAM enzyme, Cfr family [Listeria ivanovii FSL F6-596]
Length = 368
Score = 198 bits (503), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 117/346 (33%), Positives = 190/346 (54%), Gaps = 32/346 (9%)
Query: 18 FEKAGIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHS-VVDSSD 76
E G K+ +W ++ ++E ++P LL + F + +TL + VV S
Sbjct: 19 LEAHGQKKFRATQVWDWLYRKRVKTFEEMSNVPKETIELLMANF--VMNTLEAQVVQEST 76
Query: 77 DVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCAT 136
D TTK L KL +G +E V+M+ + L ++C+++QVGC +GC FCA+
Sbjct: 77 DGTTKYLFKLSDGNLIETVMMKQEYGL--------------SVCVTTQVGCNIGCTFCAS 122
Query: 137 GTMGFKSNLSSGEIVEQLVHASRLSNIR-------NVVFMGMGEPLNNYAALVEAVRIMT 189
G + +L++GEIVEQ+++ + R +VV MG+GEP +NY +++ +R++
Sbjct: 123 GLLKKSRDLTAGEIVEQIMNVQHYLDDRQLEERVSHVVVMGIGEPFDNYDNVMDFLRVIN 182
Query: 190 ---GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFP 246
GL + + ITVST G+ I F ++ +NLA+SLHAP ++R IM + +
Sbjct: 183 HDKGLA--IGARHITVSTSGLAPRIIDFANEDFQVNLAISLHAPNNELRTSIMRINKTYS 240
Query: 247 LEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQ--VVVNLIPFNPI 304
+EKLM A+ Y + + ++I EYIML GVND ++ A +L LL + VNLIP+NP+
Sbjct: 241 IEKLMEAIHYYVEKTNRRITFEYIMLKGVNDHKKEALELAALLGEHRHLAYVNLIPYNPV 300
Query: 305 GSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 350
+ S+ + V +F L+ + I +R++ G DI ACGQL
Sbjct: 301 DEHIDYERSTKEDVLAFYDTLKKN-GINCVIRREHGTDIDAACGQL 345
>gi|422846145|ref|ZP_16892828.1| cfr family radical SAM enzyme [Streptococcus sanguinis SK72]
gi|325688196|gb|EGD30215.1| cfr family radical SAM enzyme [Streptococcus sanguinis SK72]
Length = 362
Score = 198 bits (503), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 119/349 (34%), Positives = 191/349 (54%), Gaps = 34/349 (9%)
Query: 19 EKAGIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKF--KPLTSTLHSVVDSSD 76
E G K+ IW+++ ++E +L + L +F PL +V S
Sbjct: 18 EAQGEKKFRAAQIWEWLYRKRVQSFEEMTNLSKDLIAKLNDQFVVNPLK---QRIVQESA 74
Query: 77 DVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCAT 136
D T K L +L +G +E V+MR L ++C+++QVGC +GC FCA+
Sbjct: 75 DGTVKYLFELPDGMLIETVLMRQHYGL--------------SVCVTTQVGCNIGCTFCAS 120
Query: 137 GTMGFKSNLSSGEIVEQLVHASRLSNIR-------NVVFMGMGEPLNNYAALVEAVRIMT 189
G + + +L++GEIV Q++ + + R ++V MG+GEP +NY +++ VR +
Sbjct: 121 GLIKKQRDLNNGEIVAQIMLVQKYFDERGQNERVSHIVVMGIGEPFDNYDNVLKFVRTVN 180
Query: 190 ---GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFP 246
GL + + ITVST G+ H I F ++ +NLAVSLHAP D+R IM R+FP
Sbjct: 181 DDKGLA--IGARHITVSTSGLAHKIRDFANEGVQVNLAVSLHAPNNDLRTSIMRINRSFP 238
Query: 247 LEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVV--VNLIPFNPI 304
+EKL A++ Y + + +++ EYIML+ VND + A +L +LL+ + + VNLIP+NP+
Sbjct: 239 IEKLFAAIEYYIETTNRRVTFEYIMLNEVNDGVEQAKELAELLKNIKKLSYVNLIPYNPV 298
Query: 305 GSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVN 353
Q+ S ++V +F L+ + + VR++ G DI ACGQL N
Sbjct: 299 SEHDQYSRSPKERVMAFYDTLKKN-GVNCVVRQEHGTDIDAACGQLRSN 346
>gi|88812659|ref|ZP_01127906.1| hypothetical protein NB231_00700 [Nitrococcus mobilis Nb-231]
gi|88790075|gb|EAR21195.1| hypothetical protein NB231_00700 [Nitrococcus mobilis Nb-231]
Length = 378
Score = 198 bits (503), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 118/309 (38%), Positives = 177/309 (57%), Gaps = 36/309 (11%)
Query: 62 KPLTSTLHSVVD----------SSDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPR 111
KPL + L + + +S D K L+ L +E V + P
Sbjct: 65 KPLRARLAEIAEIRLPSAVFDRTSADGVRKWLLTLDGDNAIETVFI------------PE 112
Query: 112 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASR-------LSNIR 164
PG R TLC+SSQ+GC + C FC+TG GF NL++ EIV QL+ ++ +
Sbjct: 113 PG--RGTLCVSSQLGCPLACTFCSTGQQGFNRNLTAAEIVGQLLFVTQALAADGVAGRVT 170
Query: 165 NVVFMGMGEPLNNYAALVEAVRIMTG-LPFQVSPKRITVSTVGIVHAINKFHSDLPGLNL 223
NVVFMGMGEPL N+A++++A +M + +S +R+T+ST GIV A+ + +++ ++L
Sbjct: 171 NVVFMGMGEPLANFASVLKASNLMVDEHAYNLSRRRVTLSTSGIVPALYRL-AEVSRISL 229
Query: 224 AVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEY-QKNSQQKIFIEYIMLDGVNDEEQHA 282
AVSLHAP +R +++P R +P+ +L+ A + Y + +I EY+MLD VND + HA
Sbjct: 230 AVSLHAPDDALRDELVPINRKYPIAELLAACRNYVECTPHHRITWEYVMLDAVNDTDGHA 289
Query: 283 HQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQD 342
L +LL+ +NLIPFN + +R+S +V+ F +IL+ + I TTVRK G D
Sbjct: 290 QALARLLKGVPSKINLIPFNAFPG-APYRSSPPQRVARFTEILQRAGYI-TTVRKTRGDD 347
Query: 343 ISGACGQLV 351
I GACGQLV
Sbjct: 348 IDGACGQLV 356
>gi|315651136|ref|ZP_07904168.1| cfr family radical SAM enzyme [Lachnoanaerobaculum saburreum DSM
3986]
gi|315486601|gb|EFU76951.1| cfr family radical SAM enzyme [Lachnoanaerobaculum saburreum DSM
3986]
Length = 352
Score = 198 bits (503), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 115/329 (34%), Positives = 181/329 (55%), Gaps = 23/329 (6%)
Query: 25 QHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHSVVDSSDDVTTKLLV 84
+ + K +IE+ +DE +L A +L+S+ + V S D T K L
Sbjct: 28 KQLFEWMHKLLIES----FDECTNLSKAFREILKSQVILTRLKMVEVFTSKIDDTRKYLF 83
Query: 85 KLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSN 144
L +G +E+V M+Y+ +++CISSQVGC+MGC FCA+ G N
Sbjct: 84 ALSDGNIIESVRMKYEHG--------------NSVCISSQVGCRMGCKFCASTLDGLVRN 129
Query: 145 LSSGEIVEQLVHASRL--SNIRNVVFMGMGEPLNNYAALVEAVRIMTG-LPFQVSPKRIT 201
L++ E+++Q+ R+ + N+V MG GEPL+NY +V+ VRI++ + +S + IT
Sbjct: 130 LTTAEMLDQVYSIQRILGERVSNIVVMGSGEPLDNYDNIVKFVRIISSDMGLNISQRNIT 189
Query: 202 VSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNS 261
VST GIV I K + + LA+SLHAP ++R IMP A + L+ ++ A Y K +
Sbjct: 190 VSTCGIVPKIKKLADEGLNITLALSLHAPNDEIRKTIMPVANKYALKDIIAACDYYFKKT 249
Query: 262 QQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSF 321
+++ EY ++ GVND + A L +L+ + +NLIP NPI F+ S K+ +F
Sbjct: 250 GRRVSYEYSLVAGVNDNMEEAKSLVRLVNGRNIHINLIPVNPIKE-RDFKQSDKLKIKAF 308
Query: 322 QKILRGSYNIRTTVRKQMGQDISGACGQL 350
+ L + T+R++MG+DI GACGQL
Sbjct: 309 RDFLEKK-GVNATIRREMGRDIDGACGQL 336
>gi|291563554|emb|CBL42370.1| 23S rRNA m(2)A-2503 methyltransferase [butyrate-producing bacterium
SS3/4]
Length = 348
Score = 198 bits (503), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 120/312 (38%), Positives = 181/312 (58%), Gaps = 23/312 (7%)
Query: 44 DEFPSLPSAAYSLLRSKFKPLTSTLHSV--VDSSDDVTTKLLVKLQNGGFVEAVIMRYDS 101
DE +LP + L S++ TS L +V ++S D T K L L +G +E+V+M+Y
Sbjct: 44 DECTNLPKSLKEKL-SEYSTYTS-LKTVKMLESGIDGTRKYLFGLDDGNVIESVLMKY-- 99
Query: 102 SLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLS 161
++G +++CISSQVGC+MGC FCA+ G NL E+++Q+ R +
Sbjct: 100 ----HHG--------NSVCISSQVGCRMGCRFCASTLDGLTRNLRPSEMLDQIYRIQRST 147
Query: 162 NIR--NVVFMGMGEPLNNYAALVEAVRIMTGLP-FQVSPKRITVSTVGIVHAINKFHSDL 218
R NVV MG GEP++NY L+ +R+++ +S + ITVST GIV I K +
Sbjct: 148 GERVSNVVVMGSGEPMDNYDNLIRFIRLLSDENGLNISQRNITVSTCGIVPKILKLAEEG 207
Query: 219 PGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDE 278
+ LA+SLHAP + R +MP A ++ L +++ A KEY K + +++ EY ++ GVND
Sbjct: 208 LSITLALSLHAPDDETRKTLMPIANSYSLSEVLPACKEYYKKTGRRLTFEYSLVQGVNDN 267
Query: 279 EQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQ 338
A +L LL+ Q VNLIP NPI F+ S+ D + +F+ L + I T+R++
Sbjct: 268 LDEAKRLTALLKDMQGHVNLIPVNPIKE-RDFKQSNRDAIDAFRGYLE-KHGINVTIRRE 325
Query: 339 MGQDISGACGQL 350
MG+DI GACGQL
Sbjct: 326 MGRDIGGACGQL 337
>gi|422866011|ref|ZP_16912636.1| cfr family radical SAM enzyme [Streptococcus sanguinis SK1058]
gi|327489556|gb|EGF21349.1| cfr family radical SAM enzyme [Streptococcus sanguinis SK1058]
Length = 362
Score = 198 bits (503), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 119/349 (34%), Positives = 191/349 (54%), Gaps = 34/349 (9%)
Query: 19 EKAGIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKF--KPLTSTLHSVVDSSD 76
E G K+ IW+++ ++E +L + L +F PL +V S
Sbjct: 18 EAQGEKKFRASQIWEWLYRKRVQSFEEMTNLSKDLIAKLNDQFVVNPLK---QRIVQESA 74
Query: 77 DVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCAT 136
D T K L +L +G +E V+MR L ++C+++QVGC +GC FCA+
Sbjct: 75 DGTVKYLFELPDGMLIETVLMRQHYGL--------------SVCVTTQVGCNIGCTFCAS 120
Query: 137 GTMGFKSNLSSGEIVEQLVHASRLSNIR-------NVVFMGMGEPLNNYAALVEAVRIMT 189
G + + +L++GEIV Q++ + + R ++V MG+GEP +NY +++ VR +
Sbjct: 121 GLIKKQRDLNNGEIVAQIMLVQKYFDERGQDERVSHIVVMGIGEPFDNYDNVLKFVRTVN 180
Query: 190 ---GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFP 246
GL + + ITVST G+ H I F ++ +NLAVSLHAP D+R IM R+FP
Sbjct: 181 DDKGLA--IGARHITVSTSGLAHKIRDFANEGVQVNLAVSLHAPNNDLRTSIMRINRSFP 238
Query: 247 LEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVV--VNLIPFNPI 304
+EKL A++ Y + + +++ EYIML+ VND + A +L +LL+ + + VNLIP+NP+
Sbjct: 239 IEKLFAAIEYYIETTNRRVTFEYIMLNEVNDGVEEAKELAELLKNIKKLSYVNLIPYNPV 298
Query: 305 GSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVN 353
Q+ S ++V +F L+ + + VR++ G DI ACGQL N
Sbjct: 299 SEHDQYSRSPKERVMAFYDTLKKN-GVNCVVRQEHGTDIDAACGQLRSN 346
>gi|312866070|ref|ZP_07726291.1| 23S rRNA m2A2503 methyltransferase [Streptococcus downei F0415]
gi|311098474|gb|EFQ56697.1| 23S rRNA m2A2503 methyltransferase [Streptococcus downei F0415]
Length = 375
Score = 198 bits (503), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 115/346 (33%), Positives = 191/346 (55%), Gaps = 34/346 (9%)
Query: 22 GIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKF--KPLTSTLHSVVDSSDDVT 79
G K+ IW ++ + +DE ++ +LL+ F PL +V S D T
Sbjct: 33 GQKKFRASQIWDWLYKKRVQSFDEMTNISKDFIALLKENFDFNPLK---QRIVQESADGT 89
Query: 80 TKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTM 139
K L +L +G +E V+MR L ++C+++QVGC +GC FCA+G +
Sbjct: 90 IKYLFELPDGMLIETVLMRQHYGL--------------SVCVTTQVGCNIGCTFCASGLI 135
Query: 140 GFKSNLSSGEIVEQLVHASRL-------SNIRNVVFMGMGEPLNNYAALVEAVRIMT--- 189
+ +L++GEI Q++ + + +VV MG+GEP +NY ++ +R +
Sbjct: 136 KKQRDLNNGEITAQIMLVQKYLDDQGNGERVSHVVVMGIGEPFDNYDNVIRFLRTINDDN 195
Query: 190 GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEK 249
GL + + ITVST G+ H I +F ++ +NLAVSLHAP ++R IM R+FPLEK
Sbjct: 196 GLA--IGARHITVSTSGLAHKIREFANEGIQVNLAVSLHAPNNELRSSIMRINRSFPLEK 253
Query: 250 LMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVV--VNLIPFNPIGSV 307
L +A++ Y + + +++ EYIML+ VND ++A +L L ++ + + VNLIP+N +
Sbjct: 254 LFDAIEYYIQTTNRRVTFEYIMLNEVNDYPENAQELADLTKSIRKLSYVNLIPYNAVSEH 313
Query: 308 SQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVN 353
Q+ S+ ++V +F +L+ + + VR++ G DI ACGQL N
Sbjct: 314 DQYSRSTKERVDAFYDVLKKN-GVNCVVRQEHGTDIDAACGQLRSN 358
>gi|306827020|ref|ZP_07460318.1| cfr family radical SAM enzyme [Streptococcus pyogenes ATCC 10782]
gi|304430766|gb|EFM33777.1| cfr family radical SAM enzyme [Streptococcus pyogenes ATCC 10782]
Length = 359
Score = 198 bits (503), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 120/343 (34%), Positives = 190/343 (55%), Gaps = 34/343 (9%)
Query: 22 GIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKF--KPLTSTLHSVVDSSDDVT 79
G KQ IW ++ + ++E ++ S+L F PL VV S D T
Sbjct: 21 GQKQFRATQIWDWLYKKRVQSFEEMTNISKDFVSILNDSFCVNPLK---QRVVQESADGT 77
Query: 80 TKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTM 139
K L +L +G +E V+MR ++ G ++C+++QVGC +GC FCA+G +
Sbjct: 78 VKYLFELPDGMLIETVLMR------QHYG--------HSVCVTTQVGCNIGCTFCASGLI 123
Query: 140 GFKSNLSSGEIVEQLVHASRLSNIR-------NVVFMGMGEPLNNYAALVEAVRIMT--- 189
+ +L+SGEI Q++ + + R +VV MG+GEP +NY ++ +R++
Sbjct: 124 KKQRDLNSGEITAQIMLVQKYFDDRKQGERVSHVVVMGIGEPFDNYKNVMCFLRVINDDN 183
Query: 190 GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEK 249
GL + + ITVST G+ H I F ++ NLAVSLHAP D+R IM R+FPLEK
Sbjct: 184 GLA--IGARHITVSTSGLAHKIRDFANEGVQANLAVSLHAPNNDLRSSIMRVNRSFPLEK 241
Query: 250 LMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVV--VNLIPFNPIGSV 307
L +A++ Y + + +++ EYIML+ VND + A +L L +T + + VNLIP+NP+
Sbjct: 242 LFSAIEYYIEKTNRRVTFEYIMLNEVNDSIKQAQELADLTKTIRKLSYVNLIPYNPVSEH 301
Query: 308 SQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 350
Q+ S ++V +F +L+ + + VR++ G DI ACGQL
Sbjct: 302 DQYSRSPKERVLAFYDVLKKN-GVNCVVRQEHGTDIDAACGQL 343
>gi|409358276|ref|ZP_11236639.1| ribosomal RNA large subunit methyltransferase N [Dietzia
alimentaria 72]
Length = 369
Score = 198 bits (503), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 117/309 (37%), Positives = 169/309 (54%), Gaps = 33/309 (10%)
Query: 61 FKPLTSTLHSVVDSSDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLC 120
F PL S+L + + + T K L KL +G VE+V+MRY R+TLC
Sbjct: 77 FPPLASSLRHIT-ADEGTTRKTLWKLHDGSLVESVLMRYPD--------------RATLC 121
Query: 121 ISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRL----------SNIRNVVFMG 170
ISSQ GC M C FCATG G + NLS+ EI+EQ+ A+R + NVVFMG
Sbjct: 122 ISSQAGCGMACPFCATGQGGLQRNLSAAEILEQVRVAARSLRDGEVPGGPGRLSNVVFMG 181
Query: 171 MGEPLNNYAALVEAVRIMTGLP---FQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSL 227
MGEPL NY ++ AVR + P F +S + +TVSTVG+V AI++ + + LAVSL
Sbjct: 182 MGEPLANYKRVLTAVRGIVSPPPSGFGLSQRAVTVSTVGVVPAIHRLAEEGLQVTLAVSL 241
Query: 228 HAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGK 287
H P ++R ++P +P+ ++M+A + Y + +++ IEY ++ VND+ LG+
Sbjct: 242 HTPDDELRDSLVPVNNRWPVSEVMDAARHYADATGRRVSIEYALIRDVNDQTWRGEMLGR 301
Query: 288 LLETF---QVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDIS 344
LL VNLIP NP S++ S + +F +R + + TVR GQ+I+
Sbjct: 302 LLSQRLGPMAHVNLIPLNPTPG-SEWDASPKHQQDAFVDAVRAA-GVSCTVRDTRGQEIA 359
Query: 345 GACGQLVVN 353
ACGQL
Sbjct: 360 AACGQLAAE 368
>gi|301632243|ref|XP_002945200.1| PREDICTED: ribosomal RNA large subunit methyltransferase N-like
[Xenopus (Silurana) tropicalis]
Length = 328
Score = 198 bits (503), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 127/303 (41%), Positives = 166/303 (54%), Gaps = 33/303 (10%)
Query: 74 SSDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNF 133
+S D T K L + G VE V + P R TLC+SSQ GC +GC F
Sbjct: 28 ASADGTVKWLFDVGGGNAVETVFI--------------PEDDRGTLCVSSQAGCAVGCRF 73
Query: 134 CATGTMGFKSNLSSGEIVEQLVHAS-----RLSN----IRNVVFMGMGEPLNNYAALVEA 184
C+TG GF NLS+GEI+ QL +A RL + I NVV MGMGEPL NYAALV A
Sbjct: 74 CSTGHQGFSRNLSTGEILAQLWYAEHHLRQRLGSSERVISNVVMMGMGEPLQNYAALVPA 133
Query: 185 VRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAAR 243
+R+M + +S +R+TVST G+V + + D P + LAVSLHAP +R ++ R
Sbjct: 134 LRVMLDDHGYGLSRRRVTVSTSGVVPMMERLALDCP-VALAVSLHAPNDALRDHLVSLNR 192
Query: 244 AFPLEKLMNALKEYQKNSQQK-IFIEYIMLDGVNDEEQHAHQLGKLLE-----TFQVVVN 297
+PLE+L+ Y ++ + I EY MLDGVND+ +HA QL +L+ N
Sbjct: 193 KYPLEELLQTCVRYLDHAPRDFITFEYCMLDGVNDQPEHAQQLIQLVRGHAQGKVWCKFN 252
Query: 298 LIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDK 357
LIPFNP R S +VS F ++L + I TTVRK G DI ACGQL + D+
Sbjct: 253 LIPFNPFPESGLVR-SPPQRVSGFARLLSDA-GIVTTVRKTRGDDIDAACGQLAGEVKDR 310
Query: 358 ISA 360
A
Sbjct: 311 TRA 313
>gi|197118042|ref|YP_002138469.1| ribosomal RNA large subunit methyltransferase N [Geobacter
bemidjiensis Bem]
gi|197087402|gb|ACH38673.1| 23S rRNA (2-methyl-A2503)-methyltransferase [Geobacter bemidjiensis
Bem]
Length = 351
Score = 198 bits (503), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 117/321 (36%), Positives = 180/321 (56%), Gaps = 19/321 (5%)
Query: 31 IWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHSVVDSSDDVTTKLLVKLQNGG 90
I+K++ + ++E ++ S + ++ + +++ VV++S+D T K L +L +G
Sbjct: 31 IFKWLYQMDAGSFEEMTNV-SKEFRVMLGEIAQISNLTPEVVEASEDGTRKYLFRLSDGS 89
Query: 91 FVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEI 150
VE+V++ P R+TLCISSQVGC MGC FC TG+ G NL++ EI
Sbjct: 90 AVESVLI--------------PDEGRNTLCISSQVGCAMGCAFCLTGSFGLSRNLTTAEI 135
Query: 151 VEQLVHASRLSNIRNVVFMGMGEPLNNYAALVEAVRIMTGLP-FQVSPKRITVSTVGIVH 209
V Q+ R + N+VFMGMGEPL N ++ AV+I+T FQ S +++TVST G+V
Sbjct: 136 VNQVCAVKRDQPVNNIVFMGMGEPLANLKGVIPAVQILTDPDGFQFSTRKVTVSTSGLVP 195
Query: 210 AINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEY 269
+ + +NLAVSL+A +VR +IMP R +PL +L+ A K + S++ I +EY
Sbjct: 196 EMAELGRGCT-VNLAVSLNATTDEVRSRIMPVNRTYPLAQLLAACKAFPLPSRRWITMEY 254
Query: 270 IMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSY 329
+M+ +ND + A +L +L+ VNLIPFN F+ + + + F K L
Sbjct: 255 VMIRDLNDSLEDAKRLVRLISNIPSKVNLIPFNEHEGCD-FKCPTQESIDRFHKYLL-DK 312
Query: 330 NIRTTVRKQMGQDISGACGQL 350
N+ R G DIS ACGQL
Sbjct: 313 NVTVITRSSRGSDISAACGQL 333
>gi|313886711|ref|ZP_07820421.1| 23S rRNA m2A2503 methyltransferase [Porphyromonas asaccharolytica
PR426713P-I]
gi|312923873|gb|EFR34672.1| 23S rRNA m2A2503 methyltransferase [Porphyromonas asaccharolytica
PR426713P-I]
Length = 341
Score = 198 bits (503), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 118/311 (37%), Positives = 172/311 (55%), Gaps = 24/311 (7%)
Query: 43 WDEFPSLPSAAYSLLRSKFKPLTSTLHSVVDSSDDVTTKLLVKLQNGGFVEAVIMRYDSS 102
WDE +L A +LL S ++ + H + +S D T K L GGF+E V++
Sbjct: 44 WDEMTNLSKKARALLASHYEIGRAAPH-LQQTSRDGTVKYLFA-AGGGFIETVMI----- 96
Query: 103 LGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN 162
P G R+TLC+SSQ GCKM C FC TG GF +NLS+ EI+ Q++ ++
Sbjct: 97 ---------PEGDRATLCVSSQRGCKMNCLFCMTGKQGFGANLSASEILNQILSVPEVNE 147
Query: 163 IRNVVFMGMGEPLNNYAALVEAVRIMT---GLPFQVSPKRITVSTVGIVHAINKFHSDLP 219
+ N+VFMGMGEP++N L++ +R +T GL +SPKRITVST+G+ + +F +
Sbjct: 148 LTNIVFMGMGEPMDNIDTLLQVIRCLTDPQGLA--MSPKRITVSTIGLRPGLERFLEECT 205
Query: 220 GLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEE 279
+LA+SLH P+ + R IMP RA PL + L+ Y + Q+++ EYI+ G+ND
Sbjct: 206 -CHLAISLHNPLPEERLSIMPVERAMPLADTVALLRHYDWSRQRRLTFEYIVFSGLNDTP 264
Query: 280 QHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQM 339
+H L +LL VNLI ++ I + SSD + + I TT+R
Sbjct: 265 RHLAALKRLLAQLDCHVNLIRYHRIPHIDL--PSSDMTRMEWLRDRLCEAGIPTTIRTSR 322
Query: 340 GQDISGACGQL 350
G+DIS ACG L
Sbjct: 323 GEDISAACGML 333
>gi|312793230|ref|YP_004026153.1| radical sam enzyme, cfr family [Caldicellulosiruptor kristjanssonii
177R1B]
gi|312180370|gb|ADQ40540.1| radical SAM enzyme, Cfr family [Caldicellulosiruptor kristjanssonii
177R1B]
Length = 344
Score = 198 bits (503), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 120/337 (35%), Positives = 191/337 (56%), Gaps = 23/337 (6%)
Query: 18 FEKAGIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHSVVDSSDD 77
E G K +++++ + + +F +LP + +F L ++L + SD
Sbjct: 17 LESVGEKPFRATQVFEWLYKKNATDVMQFTNLPLELRKKIEDEF--LINSLQILKYQSDG 74
Query: 78 VTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATG 137
+ K L +L + VE+V + Y R G + +C+S+QVGCKM C FCA+
Sbjct: 75 ESIKFLFELCDKNGVESVFLPY-----------RYG---NAICVSTQVGCKMNCRFCAST 120
Query: 138 TMGFKSNLSSGEIVEQLVHASRLS--NIRNVVFMGMGEPLNNYAALVEAVRIMTGLPFQ- 194
GF NLS GE+V+Q+++A + I NVV MG GEP +N + + + I+ +
Sbjct: 121 IGGFVRNLSPGEMVDQIINAENFTGKRITNVVLMGSGEPFDNIENVFKFIEIINSKEGKN 180
Query: 195 VSPKRITVSTVGIVHAINKFHSDLPG-LNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNA 253
+ + IT+STVGIV I + D P +NLA+SLHAP +R +++P + +P+E +M A
Sbjct: 181 IGARHITISTVGIVEGIYRL-CDFPKQVNLAISLHAPNNSLRDKLVPINKKYPVEDIMKA 239
Query: 254 LKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTS 313
+ Y K + +++ EY ++DGVND + A +LGK+L+ V VNLIP NP+ FR
Sbjct: 240 VDYYIKRTNRRVTFEYALIDGVNDSIECAQELGKMLKGKLVHVNLIPVNPVEE-KGFRRP 298
Query: 314 SDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 350
S +K+ +F + LR SY I+ T+R+++G IS ACGQL
Sbjct: 299 SKEKIKAFFETLR-SYQIQVTIRRELGSSISAACGQL 334
>gi|291547144|emb|CBL20252.1| 23S rRNA m(2)A-2503 methyltransferase [Ruminococcus sp. SR1/5]
Length = 346
Score = 198 bits (503), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 127/350 (36%), Positives = 192/350 (54%), Gaps = 30/350 (8%)
Query: 20 KAGIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKFK--PLTS-TLHSVVDSSD 76
K G K I+ ++ + WDE +L + LR K P+T+ T V S
Sbjct: 18 KIGEKPFRAKQIYAWLHQQLVTSWDEMTNLSKS----LREKLSAYPITALTQADVRISKI 73
Query: 77 DVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCAT 136
D T K L +L++G +E+V+MRY ++G +++CISSQVGC+MGC FCA+
Sbjct: 74 DGTRKYLFQLEDGNVIESVLMRY------HHG--------NSVCISSQVGCRMGCRFCAS 119
Query: 137 GTMGFKSNLSSGEIVEQL--VHASRLSNIRNVVFMGMGEPLNNYAALVEAVRIMT---GL 191
G L E+++Q+ + A + NVV MG GEP++NY LV VRI+T GL
Sbjct: 120 TIGGLTRCLKPSEMLDQIYRIQADTGERVANVVVMGTGEPMDNYDNLVRFVRILTDENGL 179
Query: 192 PFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLM 251
+S + +TVST GIV + + + LA+SLHAP + R ++MP A + +++++
Sbjct: 180 G--ISQRNVTVSTCGIVPKMYDLAEEKLQITLALSLHAPNDEKRQELMPIANKYSMDEVL 237
Query: 252 NALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFR 311
+A + Y + ++I EY ++ GVND E+ A QL ++ VNLIP NPI S R
Sbjct: 238 DACRNYFDKTGRRITFEYSLVAGVNDSEEDARQLAGRIKGINCHVNLIPVNPIKERSYVR 297
Query: 312 TSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDKISAK 361
S+ V +F KI Y I T+R++MG DI GACGQL + +K ++
Sbjct: 298 -STRQAVENF-KIKLEKYGINVTIRREMGSDIDGACGQLRKSYMEKTESE 345
>gi|269123374|ref|YP_003305951.1| radical SAM enzyme, Cfr family [Streptobacillus moniliformis DSM
12112]
gi|268314700|gb|ACZ01074.1| radical SAM enzyme, Cfr family [Streptobacillus moniliformis DSM
12112]
Length = 353
Score = 198 bits (503), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 116/341 (34%), Positives = 185/341 (54%), Gaps = 22/341 (6%)
Query: 18 FEKAGIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHSVVDSSDD 77
F + G+K+ +++++ + +DEF ++ LL+ KF+ T + S D
Sbjct: 18 FLELGLKKFNALQVYQWLHKKLVFNFDEFSNISKETRELLKEKFEIGTLKYVTHQTSKDK 77
Query: 78 VTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATG 137
T K L L +E+V+++Y + R ++C+SSQVGC + C+FCATG
Sbjct: 78 ETVKFLFSLPGKKLIESVLLKYKN--------------RYSICVSSQVGCPLKCDFCATG 123
Query: 138 TMGFKSNLSSGEIVEQLVH-----ASRLSNIRNVVFMGMGEPLNNYAALVEAVRIMTGLP 192
M F+ NL + EI+ Q + + I NVV+MGMGEP NY A+ +++ I+
Sbjct: 124 MMKFEKNLKASEILMQFYYLQNYLKEKNDKISNVVYMGMGEPFLNYDAVNKSINILNSKE 183
Query: 193 FQVSPKR-ITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLM 251
Q KR T+ST G+++ I+KF D + LA+SLH+ + R ++MP + PL+KL
Sbjct: 184 GQAFSKRNFTISTSGLINEIDKFVEDQKQVGLAISLHSVNEKRRSELMPINKINPLDKLR 243
Query: 252 NALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFR 311
+L YQ ++ +I EYI++D N E++ A L K + +F +VNLIP+N + ++
Sbjct: 244 ESLLNYQNKTKNRITFEYILIDDFNCEKEDAVALVKFMRSFNHLVNLIPYNKVAG-KPYK 302
Query: 312 TSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVV 352
T S K F L S+ I T+R+ G+DI ACGQL V
Sbjct: 303 TPSLQKQKEFYNHLL-SHKINVTLRETKGEDIQAACGQLKV 342
>gi|148244511|ref|YP_001219205.1| Fe-S-cluster redox enzyme [Candidatus Vesicomyosocius okutanii HA]
gi|205829924|sp|A5CX33.1|RLMN_VESOH RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|146326338|dbj|BAF61481.1| Fe-S-cluster redox enzyme [Candidatus Vesicomyosocius okutanii HA]
Length = 356
Score = 198 bits (503), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 110/261 (42%), Positives = 161/261 (61%), Gaps = 14/261 (5%)
Query: 112 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN-----IRNV 166
P R TLCISSQVGC + C FC+TG GF NL++ EI+ Q++ A++ N I N+
Sbjct: 97 PEKDRGTLCISSQVGCALACTFCSTGMQGFNKNLTTAEIIAQVLIANKYLNSKTKRISNI 156
Query: 167 VFMGMGEPLNNYAALVEAVR-IMTGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAV 225
VFMGMGEPL N A+ A ++ L F +S +++T+ST GIV +I + P ++LA+
Sbjct: 157 VFMGMGEPLLNEQAVYNACDLLLDDLAFGLSRRKVTISTSGIVPSILRMSKRTP-VSLAI 215
Query: 226 SLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQK--IFIEYIMLDGVNDEEQHAH 283
SLHAP +R +++P + + +E+L+ A K Y Q+ I EY+ML VND +HA+
Sbjct: 216 SLHAPNNQLRDKLVPVNQKYSIEELLKACKVYLNAGTQERHILFEYVMLKDVNDSTEHAN 275
Query: 284 QLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDI 343
+L KLL+ VNLIPFN +Q+++S+ + FQ IL IRT +R+ G+DI
Sbjct: 276 KLAKLLKAISAKVNLIPFNSFER-TQYQSSNAQTIEKFQDILYQQ-GIRTMMRRTRGEDI 333
Query: 344 SGACGQL---VVNLPDKISAK 361
GACGQL V+N K++A+
Sbjct: 334 DGACGQLAGKVLNKTKKLNAR 354
>gi|422852157|ref|ZP_16898827.1| cfr family radical SAM enzyme [Streptococcus sanguinis SK150]
gi|325694144|gb|EGD36062.1| cfr family radical SAM enzyme [Streptococcus sanguinis SK150]
Length = 362
Score = 198 bits (503), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 119/349 (34%), Positives = 191/349 (54%), Gaps = 34/349 (9%)
Query: 19 EKAGIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKF--KPLTSTLHSVVDSSD 76
E G K+ IW+++ ++E +L + L +F PL +V S
Sbjct: 18 EAQGEKKFRAAQIWEWLYRKRVQSFEEMTNLSKDLIAKLNDQFVVNPLK---QRIVQESA 74
Query: 77 DVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCAT 136
D T K L +L +G +E V+MR L ++C+++QVGC +GC FCA+
Sbjct: 75 DGTVKYLFELPDGMLIETVLMRQHYGL--------------SVCVTTQVGCNIGCTFCAS 120
Query: 137 GTMGFKSNLSSGEIVEQLVHASRLSNIR-------NVVFMGMGEPLNNYAALVEAVRIMT 189
G + + +L++GEIV Q++ + + R ++V MG+GEP +NY +++ VR +
Sbjct: 121 GLIKKQRDLNNGEIVAQIMLVQKYFDERGQDERVSHIVVMGIGEPFDNYDNVLKFVRTVN 180
Query: 190 ---GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFP 246
GL + + ITVST G+ H I F ++ +NLAVSLHAP D+R IM R+FP
Sbjct: 181 DDKGLA--IGARHITVSTSGLAHKIRDFANEGVQVNLAVSLHAPNNDLRTSIMRINRSFP 238
Query: 247 LEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVV--VNLIPFNPI 304
+EKL A++ Y + + +++ EYIML+ VND + A +L +LL+ + + VNLIP+NP+
Sbjct: 239 IEKLFAAIEYYIETTNRRVTFEYIMLNEVNDGVEQAKELAELLKNIKKLSYVNLIPYNPV 298
Query: 305 GSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVN 353
Q+ S ++V +F L+ + + VR++ G DI ACGQL N
Sbjct: 299 SEHDQYSRSPKERVMAFYDTLKKN-GVNCVVRQEHGTDIDAACGQLRSN 346
>gi|78358007|ref|YP_389456.1| ribosomal RNA large subunit methyltransferase N [Desulfovibrio
alaskensis G20]
gi|123727640|sp|Q30X35.1|RLMN_DESDG RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|78220412|gb|ABB39761.1| radical SAM enzyme, Cfr family [Desulfovibrio alaskensis G20]
Length = 358
Score = 198 bits (503), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 122/345 (35%), Positives = 187/345 (54%), Gaps = 32/345 (9%)
Query: 19 EKAGIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSK---FKPLTSTLHSVVDSS 75
EK G K+ IW+++ ++D+ ++ + L+ F P T S
Sbjct: 18 EKLGEKKFRARQIWQWLWNKYVRDFDQMTNVSKQTRAQLKEHARIFWPEVVT----TSKS 73
Query: 76 DDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGP-RSTLCISSQVGCKMGCNFC 134
D TTK L++L +G VE V++ PG R T C+S QVGC MGC FC
Sbjct: 74 QDGTTKFLLRLADGALVETVLI--------------PGSQGRITQCLSCQVGCAMGCTFC 119
Query: 135 ATGTMGFKSNLSSGEIVEQLVHASRLSN-------IRNVVFMGMGEPLNNYAALVEAVRI 187
ATGT+GF+ N++ EI+ Q++ A N +RN+VFMGMGEPL N ++ ++
Sbjct: 120 ATGTLGFERNMTMSEILGQVLVAREYLNDVAERPILRNLVFMGMGEPLLNLDEIMRSLHT 179
Query: 188 MTG-LPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFP 246
+ L Q SP+RITVST G+ + + LAVSLHAP Q++R IMP A +
Sbjct: 180 LNSELGLQFSPRRITVSTCGVNPEGLRRLGESGLAYLAVSLHAPTQELRRTIMPKAARWE 239
Query: 247 LEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGS 306
L + AL+ Y ++++I EY++L GVND +HA QL +L+ + +NLI +NP G
Sbjct: 240 LNDFIEALQSYPLKTRERITFEYLLLGGVNDSLEHAKQLVRLVSRTKAKLNLIVYNPSGD 299
Query: 307 VSQ-FRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 350
+ + +++++ +F++ L S ++ +RK G DI ACGQL
Sbjct: 300 EADPYAAPTEERILAFEQYL-WSKHVTAIIRKSKGADIKAACGQL 343
>gi|363891052|ref|ZP_09318335.1| cfr family radical SAM enzyme [Eubacteriaceae bacterium CM5]
gi|361962019|gb|EHL15168.1| cfr family radical SAM enzyme [Eubacteriaceae bacterium CM5]
Length = 345
Score = 198 bits (503), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 123/349 (35%), Positives = 186/349 (53%), Gaps = 29/349 (8%)
Query: 9 FDGGIIRAEFEKAGIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTL 68
F+ +I FEK KQ + PL++ + +DE ++P L F ++
Sbjct: 13 FEDILISNSFEKYRAKQIY-PLVFDKI-----SSFDEINNIPKKLKEFLNENFCVNPVSI 66
Query: 69 HSVVDSSDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCK 128
+ + S D T K L+KL + +E+V+M Y L + CISSQVGC
Sbjct: 67 YKKLQSQKDYTKKYLMKLDDDNIIESVLMEYKFGL--------------SACISSQVGCL 112
Query: 129 MGCNFCATGTMGFKSNLSSGEIVEQLVHASR--LSNIRNVVFMGMGEPLNNYAALVEAVR 186
MGC FCA+ +L++GE++ Q+V S+ I N+V MG GEP +NY ++ +
Sbjct: 113 MGCTFCASTVNSKIRDLTAGEMIGQIVSMSKDVSKRISNIVIMGSGEPFDNYNNFIKFLE 172
Query: 187 IM---TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAAR 243
++ GL + + ITVST GIV I F +NLA+SLH+P Q+ R IMP +R
Sbjct: 173 LIGDENGL--NIGQRHITVSTCGIVDKIRDFADRKMQINLAISLHSPYQEKRENIMPISR 230
Query: 244 AFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNP 303
F +E+L+ + Y K + ++I EY ++ VND E+ A L KL+ VN+IP N
Sbjct: 231 KFSIEELIKSTDYYIKKTNRRITYEYAIIKNVNDSEKDALVLSKLIGHQLCHVNIIPVNT 290
Query: 304 IGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVV 352
S + + +D K+ F KIL ++ I TVR++MG DI+GACGQL +
Sbjct: 291 -SSHNDYEKPNDQKIKKFLKILADNH-INATVRREMGSDINGACGQLRI 337
>gi|384175317|ref|YP_005556702.1| radical SAM enzyme, Cfr family [Bacillus subtilis subsp. subtilis
str. RO-NN-1]
gi|428279170|ref|YP_005560905.1| hypothetical protein BSNT_02588 [Bacillus subtilis subsp. natto
BEST195]
gi|449094267|ref|YP_007426758.1| putative Fe-S-cluster AdoMet radical enzyme [Bacillus subtilis
XF-1]
gi|291484127|dbj|BAI85202.1| hypothetical protein BSNT_02588 [Bacillus subtilis subsp. natto
BEST195]
gi|349594541|gb|AEP90728.1| radical SAM enzyme, Cfr family [Bacillus subtilis subsp. subtilis
str. RO-NN-1]
gi|449028182|gb|AGE63421.1| putative Fe-S-cluster AdoMet radical enzyme [Bacillus subtilis
XF-1]
Length = 363
Score = 198 bits (503), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 114/328 (34%), Positives = 183/328 (55%), Gaps = 27/328 (8%)
Query: 31 IWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHSVVDSSDDVTTKLLVKLQNGG 90
I++++ E ++E +L L + F LT+ +V +S D T K L +L +G
Sbjct: 45 IFEWLYEKRVSSFEEMTNLSKDLREKLNTHF-VLTTLKTAVKQTSQDGTMKFLFELHDGY 103
Query: 91 FVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEI 150
+E V+MR++ +++C+++QVGC++GC FCA+ G K NL +GEI
Sbjct: 104 TIETVLMRHEYG--------------NSVCVTTQVGCRIGCTFCASTLGGLKRNLEAGEI 149
Query: 151 VEQLVHASRL-----SNIRNVVFMGMGEPLNNYAALVEAVRIMT---GLPFQVSPKRITV 202
V Q+V + + +VV MG+GEP +N+ ++ ++I+ GL + + ITV
Sbjct: 150 VAQVVKVQKALDETDERVSSVVIMGIGEPFDNFNEMLAFLKIINHDKGL--NIGARHITV 207
Query: 203 STVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQ 262
ST GI+ I +F +N A+SLHAP ++R ++MP RA+ L LM A+K Y +
Sbjct: 208 STSGIIPKIYEFADQQMQINFAISLHAPNTEIRSRLMPINRAYKLPDLMEAVKYYINKTG 267
Query: 263 QKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQ 322
++I EY + GVND+ +HA +L LLE + VNLIP N + RT D++ +F+
Sbjct: 268 RRISFEYGLFGGVNDQVEHAEELADLLEGVKCHVNLIPVNYVPERDYVRTPR-DQIFAFE 326
Query: 323 KILRGSYNIRTTVRKQMGQDISGACGQL 350
K L+ S + T+R++ G DI ACGQL
Sbjct: 327 KTLK-SRGVNVTIRREQGHDIDAACGQL 353
>gi|295696043|ref|YP_003589281.1| radical SAM enzyme, Cfr family [Kyrpidia tusciae DSM 2912]
gi|295411645|gb|ADG06137.1| radical SAM enzyme, Cfr family [Kyrpidia tusciae DSM 2912]
Length = 360
Score = 198 bits (503), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 119/343 (34%), Positives = 185/343 (53%), Gaps = 22/343 (6%)
Query: 14 IRAEFEKAGIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHSVVD 73
+R E+ G + ++ ++ + D +LP A ++LR + + T +
Sbjct: 25 LRTWLEEQGEPGYRAAQLFDWMYKKRVTSVDAMTNLPKALRNVLRERARLGTMEELTRQV 84
Query: 74 SSDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNF 133
S D TTK L +L +G VE V+MR+ S G ++C+SSQVGC MGC F
Sbjct: 85 SKKDGTTKFLFRLFDGATVETVLMRH--SYGH------------SVCVSSQVGCHMGCQF 130
Query: 134 CATGTMGFKSNLSSGEIVEQLVHASRL-----SNIRNVVFMGMGEPLNNYAALVEAVRIM 188
CA+ G NL +GE+VEQ++ R+ + +VV MG GEPL NY A + +R++
Sbjct: 131 CASTLGGLVRNLEAGEMVEQVLACQRMLDQQGQRVSSVVVMGSGEPLENYGATLRFIRLI 190
Query: 189 TGLP-FQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPL 247
T ++ + ITVST G+V AI K + + LAVSLHA +VR ++MP RA+P+
Sbjct: 191 TADEGLRIGQRHITVSTSGMVPAIRKLAEERLQITLAVSLHASNDEVRSRLMPINRAYPI 250
Query: 248 EKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSV 307
L+ A +EY + + +++ EY ++ G+ND A +L L VNLIP N +
Sbjct: 251 AVLLEACREYWEKTGRRLTFEYALIGGINDRLDQADELADRLRGLPCHVNLIPVNYVPE- 309
Query: 308 SQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 350
+F + +V +F++ L + I TVR++MG DI+ ACGQL
Sbjct: 310 RRFDRTPRRQVEAFRERLE-RHGISCTVRREMGADIAAACGQL 351
>gi|406662502|ref|ZP_11070597.1| Ribosomal RNA large subunit methyltransferase N [Cecembia
lonarensis LW9]
gi|405553575|gb|EKB48780.1| Ribosomal RNA large subunit methyltransferase N [Cecembia
lonarensis LW9]
Length = 353
Score = 197 bits (502), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 119/330 (36%), Positives = 176/330 (53%), Gaps = 34/330 (10%)
Query: 31 IWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHSVVD---SSDDVTTKLLVKLQ 87
+W ++N +D+ ++ +L+ F S H VD S D T K VKL
Sbjct: 38 LWNKSLKN----FDDMSNISKETREMLKQNF----SINHVKVDLMQHSADGTIKNAVKLF 89
Query: 88 NGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSS 147
+ VE+V++ P R T C+SSQVGC + CNFCAT + NL+
Sbjct: 90 DHKIVESVLI--------------PTEKRITACVSSQVGCSLDCNFCATARLKRMRNLNP 135
Query: 148 GEIVEQLVHASRLSN------IRNVVFMGMGEPLNNYAALVEAV-RIMTGLPFQVSPKRI 200
EI +Q+V + + N+VFMGMGEPL NY ++EA+ +I ++P+RI
Sbjct: 136 DEIYDQVVAIKEEAETYFNRPLTNIVFMGMGEPLLNYNNVIEAIDKITAPEGLGMAPRRI 195
Query: 201 TVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKN 260
T+STVGI I K D NLA+SLH+ + + R ++MP PLE L ALK + +
Sbjct: 196 TLSTVGIPKMIKKMADDEVKFNLAISLHSAINETRSRLMPINEVNPLEDLAEALKYWYQK 255
Query: 261 SQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSS 320
+++K+ EY++ +G+ND+E+HA L K + VN+I +NPI +FR +S + V
Sbjct: 256 TKRKVTYEYVIWEGINDDEKHAKALAKFCKIIPSKVNIIQYNPIDD-GEFRQASQEAVDM 314
Query: 321 FQKILRGSYNIRTTVRKQMGQDISGACGQL 350
+ ++L I VRK GQDI ACGQL
Sbjct: 315 YVRVLEDQ-GIIAKVRKSRGQDIDAACGQL 343
>gi|386758298|ref|YP_006231514.1| ribosomal RNA large subunit methyltransferase N [Bacillus sp. JS]
gi|384931580|gb|AFI28258.1| ribosomal RNA large subunit methyltransferase N [Bacillus sp. JS]
Length = 363
Score = 197 bits (502), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 114/328 (34%), Positives = 183/328 (55%), Gaps = 27/328 (8%)
Query: 31 IWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHSVVDSSDDVTTKLLVKLQNGG 90
I++++ E ++E +L L + F LT+ +V +S D T K L +L +G
Sbjct: 45 IFEWLYEKRVSSFEEMTNLSKDLREKLNTHF-VLTTLKTAVKQTSQDGTMKFLFELHDGY 103
Query: 91 FVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEI 150
+E V+MR++ +++C+++QVGC++GC FCA+ G K NL +GEI
Sbjct: 104 TIETVLMRHEYG--------------NSVCVTTQVGCRIGCTFCASTLGGLKRNLEAGEI 149
Query: 151 VEQLVHASRL-----SNIRNVVFMGMGEPLNNYAALVEAVRIMT---GLPFQVSPKRITV 202
V Q+V + + +VV MG+GEP +N+ ++ ++I+ GL + + ITV
Sbjct: 150 VAQVVKVQKALDETDERVSSVVIMGIGEPFDNFNEMLAFLKIINHDKGL--NIGARHITV 207
Query: 203 STVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQ 262
ST GI+ I +F +N A+SLHAP ++R ++MP RA+ L LM A+K Y +
Sbjct: 208 STSGIIPKIYEFADQKMQINFAISLHAPNTEIRSRLMPINRAYKLPDLMEAVKYYINKTG 267
Query: 263 QKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQ 322
++I EY + GVND+ +HA +L LLE + VNLIP N + RT D++ +F+
Sbjct: 268 RRISFEYGLFGGVNDQVEHAEELADLLEGVKCHVNLIPVNYVPERDYVRTPR-DQIFAFE 326
Query: 323 KILRGSYNIRTTVRKQMGQDISGACGQL 350
K L+ S + T+R++ G DI ACGQL
Sbjct: 327 KTLK-SRGVNVTIRREQGHDIDAACGQL 353
>gi|350552153|ref|ZP_08921359.1| Ribosomal RNA large subunit methyltransferase N [Thiorhodospira
sibirica ATCC 700588]
gi|349795018|gb|EGZ48824.1| Ribosomal RNA large subunit methyltransferase N [Thiorhodospira
sibirica ATCC 700588]
Length = 390
Score = 197 bits (502), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 116/293 (39%), Positives = 166/293 (56%), Gaps = 30/293 (10%)
Query: 71 VVDSSDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMG 130
+ ++ D T K L+ L +G VE V + P R TLC+S+QVGC +
Sbjct: 86 LAQTARDGTRKWLLGLADGNAVEMVFI--------------PEQGRGTLCVSTQVGCALQ 131
Query: 131 CNFCATGTMGFKSNLSSGEIVEQLVHASRLSN--------IRNVVFMGMGEPLNNYAALV 182
C+FCAT GF NLSS EI+ QL ASR+ I NVV MGMGEPL N+ A V
Sbjct: 132 CSFCATARQGFNRNLSSAEIIAQLWLASRVLQPEGGQSRVISNVVLMGMGEPLLNFEASV 191
Query: 183 EAVRIMT-GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPA 241
A+ +M + +S +R+TVST G+V AI++ L ++LA+SLHAP +R Q++P
Sbjct: 192 AAMELMLHDHAYGLSKRRVTVSTAGVVPAIDRLRDTL-DVSLAISLHAPDDALRDQLVPL 250
Query: 242 ARAFPLEKLMNALKEYQKNSQ--QKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLI 299
R +P+ +L+ A K Y + + Q+I +EY +++GVND Q A L +LL +NLI
Sbjct: 251 NRKYPIRELLAACKRYVREGRHHQRITVEYALINGVNDAPQQAQALARLLRDLPCKLNLI 310
Query: 300 PFNPIGSVSQFRTSSDDKVSSFQKIL-RGSYNIRTTVRKQMGQDISGACGQLV 351
PFNP S + ++ V+ FQ +L + Y T +R+ G +I ACGQLV
Sbjct: 311 PFNPFAQ-SPYAAPTEAAVARFQDVLTQAGYT--TVIRRTRGDEIDAACGQLV 360
>gi|345875081|ref|ZP_08826877.1| ribosomal RNA large subunit methyltransferase N [Neisseria weaveri
LMG 5135]
gi|343969508|gb|EGV37720.1| ribosomal RNA large subunit methyltransferase N [Neisseria weaveri
LMG 5135]
Length = 362
Score = 197 bits (502), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 131/359 (36%), Positives = 192/359 (53%), Gaps = 37/359 (10%)
Query: 18 FEKAGIKQHFIPL---------IWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTL 68
F G+ +HF + + +++ + ++ E L + S L K + L
Sbjct: 8 FNLQGLTEHFQAMGEKPFRAKQVLRWIHQGGASDFAEMTDLAKSLRSKLEEKAEIAVPEL 67
Query: 69 HSVVDSSDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCK 128
+ SSD T K L+ + G VE V + P R TLCISSQVGC
Sbjct: 68 MTSQISSDG-TRKWLLDVGTGNGVETVFI--------------PEAERGTLCISSQVGCA 112
Query: 129 MGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN--------IRNVVFMGMGEPLNNYAA 180
+ C FC+TG GF NL++ EI+ QL A++ I NVV MGMGEPL N+
Sbjct: 113 LECTFCSTGRQGFNRNLTAAEIIGQLWWANKAMGVTPKNERVISNVVMMGMGEPLANFDN 172
Query: 181 LVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIM 239
+V A+ IM + +S +R+TVST G+V +++ +P + LAVSLHA +VR +I+
Sbjct: 173 VVTALSIMLDDHGYGLSRRRVTVSTSGMVPQMDRLKEVMP-VALAVSLHASNDEVRDEIV 231
Query: 240 PAARAFPLEKLMNALKEYQ-KNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNL 298
P + +PL +LM A + Y K + I EY+MLDGVND+ QHA++L +L++ NL
Sbjct: 232 PLNKKYPLRELMAACQRYLVKAPRDFITFEYVMLDGVNDKPQHAYELIELVKDVPCKFNL 291
Query: 299 IPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDK 357
IPFNP + S + SS++ + F+ IL+ + + TVRK G DI ACGQL + DK
Sbjct: 292 IPFNPFPN-SGYERSSNENIRIFRDILQQA-GLVVTVRKTRGDDIDAACGQLAGQVQDK 348
>gi|301057688|ref|ZP_07198761.1| 23S rRNA m2A2503 methyltransferase [delta proteobacterium NaphS2]
gi|300448149|gb|EFK11841.1| 23S rRNA m2A2503 methyltransferase [delta proteobacterium NaphS2]
Length = 346
Score = 197 bits (502), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 128/348 (36%), Positives = 186/348 (53%), Gaps = 27/348 (7%)
Query: 12 GIIRAEFEK----AGIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTST 67
G+ AE EK G++ + I +++ +DE +LP SLL+ K L+S
Sbjct: 8 GLSAAEMEKWAVDNGMEAYRGRQIRHWILTRFAKSFDEMDNLPKKLRSLLKEKAH-LSSL 66
Query: 68 LHSVVDSSDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGC 127
S+D T K L +LQ+G +E V++ P TLC+SSQVGC
Sbjct: 67 RELKAIQSEDGTRKYLYQLQDGHSIETVLI--------------PERDHLTLCVSSQVGC 112
Query: 128 KMGCNFCATGTMGFKSNLSSGEIVEQLVHASRL----SNIRNVVFMGMGEPLNNYAALVE 183
MGC FCATG GF NL GEI+EQ++ + +RN+V MGMGEPL NY A+++
Sbjct: 113 AMGCVFCATGKQGFIRNLKPGEIIEQVIRTKQSLAFPDRLRNIVLMGMGEPLANYDAVIK 172
Query: 184 AVR-IMTGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAA 242
A+R I+ S +++T+ST G+V I K D+ +NLAVSL+ + R ++MP
Sbjct: 173 ALRNIIDPDGMNFSHRKVTLSTCGLVPEIKKLAKDIT-INLAVSLNGADNETRSRLMPIN 231
Query: 243 RAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFN 302
R +PLE L+ A + +++ I EYI++ ND ++ AH L +LL + +NLI N
Sbjct: 232 RKYPLEALIEACSSFPLPNRRMITFEYILIKDENDRDRDAHNLCRLLSGLRAKINLIQLN 291
Query: 303 PIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 350
S F S +KV FQ+IL + +RK G+DI ACGQL
Sbjct: 292 A-APDSPFSIPSLEKVLHFQEILTDRH-FTAIIRKSKGRDILAACGQL 337
>gi|422825823|ref|ZP_16874002.1| cfr family radical SAM enzyme [Streptococcus sanguinis SK678]
gi|324995259|gb|EGC27171.1| cfr family radical SAM enzyme [Streptococcus sanguinis SK678]
Length = 362
Score = 197 bits (502), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 119/349 (34%), Positives = 191/349 (54%), Gaps = 34/349 (9%)
Query: 19 EKAGIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKF--KPLTSTLHSVVDSSD 76
E G K+ IW+++ ++E +L + L +F PL +V S
Sbjct: 18 EAQGEKKFRAAQIWEWLYRKRVQSFEEMTNLSKDLIAKLNDQFVVNPLK---QRIVQGSA 74
Query: 77 DVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCAT 136
D T K L +L +G +E V+MR L ++C+++QVGC +GC FCA+
Sbjct: 75 DGTVKYLFELPDGMLIETVLMRQHYGL--------------SVCVTTQVGCNIGCTFCAS 120
Query: 137 GTMGFKSNLSSGEIVEQLVHASRLSNIR-------NVVFMGMGEPLNNYAALVEAVRIMT 189
G + + +L++GEIV Q++ + + R ++V MG+GEP +NY +++ VR +
Sbjct: 121 GLIKKQRDLNNGEIVAQIMLVQKYFDERGQDERVSHIVVMGIGEPFDNYDNVLKFVRTVN 180
Query: 190 ---GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFP 246
GL + + ITVST G+ H I F ++ +NLAVSLHAP D+R IM R+FP
Sbjct: 181 DDKGLA--IGARHITVSTSGLAHKIRDFANEGVQVNLAVSLHAPNNDLRTSIMRINRSFP 238
Query: 247 LEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVV--VNLIPFNPI 304
+EKL A++ Y + + +++ EYIML+ VND + A +L +LL+ + + VNLIP+NP+
Sbjct: 239 IEKLFAAIEYYIETTNRRVTFEYIMLNEVNDGVEQAKELAELLKNIKKLSYVNLIPYNPV 298
Query: 305 GSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVN 353
Q+ S ++V +F L+ + + VR++ G DI ACGQL N
Sbjct: 299 SEHDQYSRSPKERVMAFYDTLKKN-GVNCVVRQEHGTDIDAACGQLRSN 346
>gi|238020955|ref|ZP_04601381.1| hypothetical protein GCWU000324_00852 [Kingella oralis ATCC 51147]
gi|237867935|gb|EEP68941.1| hypothetical protein GCWU000324_00852 [Kingella oralis ATCC 51147]
Length = 366
Score = 197 bits (502), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 128/355 (36%), Positives = 191/355 (53%), Gaps = 28/355 (7%)
Query: 18 FEKAGIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHSVVDSSDD 77
F + G K + +++ ++ +DE L A + L L + +S D
Sbjct: 17 FAQMGEKPFRAKQVMRWIHQSGAQTFDEMTDLAKALRAKLEDNAVIGIPALMTSQESRDG 76
Query: 78 VTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATG 137
T K L+ + G VE V + P R TLCISSQVGC + C FC+TG
Sbjct: 77 -TRKWLLDVGTGNGVETVFI--------------PEAERGTLCISSQVGCALECTFCSTG 121
Query: 138 TMGFKSNLSSGEIVEQLVHASRLSN--------IRNVVFMGMGEPLNNYAALVEAVRIM- 188
GF NL++ EI+ QL A++ I NVV MGMGEP+ NY ++ A+ IM
Sbjct: 122 RQGFNRNLTAAEIIGQLWWANKALGVTPKNERVISNVVMMGMGEPMANYDNVITALSIML 181
Query: 189 TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLE 248
+ +S +R+TVST G+V +++ D+P + LAVSLHA VR +I+P + +PL+
Sbjct: 182 DDHGYGLSRRRVTVSTSGMVPQMDRLKDDMP-VALAVSLHASNDKVRDEIVPLNKKYPLK 240
Query: 249 KLMNALKEY-QKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSV 307
+LM A Y K + I EY+MLDG+ND+ +HA +L +L++ NLIPFNP +
Sbjct: 241 ELMAACNRYLAKAPRDFITFEYVMLDGINDKPEHARELVQLVKDTPCKFNLIPFNPFPN- 299
Query: 308 SQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDKISAKS 362
S + SS+ ++ F++IL + ++ TTVRK G DI ACGQL + DK ++
Sbjct: 300 SGYERSSNKNINIFKEILMEA-DLVTTVRKTRGDDIDAACGQLAGQVQDKTKRQA 353
>gi|347820223|ref|ZP_08873657.1| radical SAM enzyme, Cfr family protein [Verminephrobacter
aporrectodeae subsp. tuberculatae At4]
Length = 370
Score = 197 bits (502), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 132/369 (35%), Positives = 198/369 (53%), Gaps = 39/369 (10%)
Query: 9 FDGGIIRAEFEKAGIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLL----RSKFKPL 64
FD + A + G ++ +++++ + ++ L A S L R + PL
Sbjct: 8 FDLDALAAFCAQLGEQRFRATQLFRWIHQRGASDFGAMSDLAKALRSKLEGCARVEALPL 67
Query: 65 TSTLHSVVDSSDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQ 124
S ++ D T K L +++G VEAV + P R TLC+SSQ
Sbjct: 68 ISE-----QAASDGTLKWLFDVRDGNAVEAVFI--------------PEDDRGTLCVSSQ 108
Query: 125 VGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHAS-----RLSN----IRNVVFMGMGEPL 175
GC +GC FC+TG GF NL++GEIV QL A R I N+V MGMGEPL
Sbjct: 109 AGCAVGCRFCSTGHQGFSRNLTAGEIVAQLWFAEHSLRKRFGTAERVITNLVMMGMGEPL 168
Query: 176 NNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDV 234
NY+AL+ A+R+M + +S +R+TVST G+V +++ D P + LAVSLHAP +
Sbjct: 169 QNYSALIPALRVMLDDHGYGLSRRRVTVSTSGVVPMLDRLAQDCP-VALAVSLHAPNDPL 227
Query: 235 RCQIMPAARAFPLEKLMNALKEYQKNSQQK-IFIEYIMLDGVNDEEQHAHQLGKLLETFQ 293
R +++P R +P+ +L+ A K Y ++ + I EY MLDGVND+ A +L L+ +
Sbjct: 228 RDKLVPLNRKYPIHELLQACKRYLVHAPRDFITFEYCMLDGVNDQLAQARELIDLVRGAE 287
Query: 294 VVV--NLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLV 351
+ NLIPFNP + R S+ +++ +F K+L + I TTVR+ G DI ACGQL
Sbjct: 288 IRCKFNLIPFNPFPASGLLR-STQNQLLAFAKVLSDA-GIVTTVRRTRGDDIDAACGQLA 345
Query: 352 VNLPDKISA 360
++ D+ A
Sbjct: 346 GDVRDRTRA 354
>gi|441500899|ref|ZP_20983045.1| Ribosomal RNA large subunit methyltransferase N [Fulvivirga
imtechensis AK7]
gi|441435297|gb|ELR68695.1| Ribosomal RNA large subunit methyltransferase N [Fulvivirga
imtechensis AK7]
Length = 348
Score = 197 bits (502), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 126/345 (36%), Positives = 186/345 (53%), Gaps = 34/345 (9%)
Query: 18 FEKAGIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHSVVDS--- 74
F K G K +++++ + ++D+ ++ L+ +F + H VD
Sbjct: 22 FVKIGDKSFRAKQVYEWLWKKSAKDFDQMTNISLDTREKLKQEF----TINHIAVDQMQR 77
Query: 75 SDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFC 134
S+D T K VKL +G VE+V++ P R T CISSQVGC + CNFC
Sbjct: 78 SNDGTIKNAVKLFDGMIVESVLI--------------PTDKRITACISSQVGCSLDCNFC 123
Query: 135 ATGTMGFKSNLSSGEIVEQLVHASRLSN------IRNVVFMGMGEPLNNYAALVEAVRIM 188
AT + NL+ EI +Q+V S + N+VFMGMGEPL NY ++EA+ +
Sbjct: 124 ATARLKRMRNLNPDEIYDQVVAIKEQSEQFFSRPLTNIVFMGMGEPLLNYGNVIEAIEKI 183
Query: 189 T---GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAF 245
T GL +SPKRIT+STVGI I K D NLAVSLH+ + + R ++MP
Sbjct: 184 TKPEGLG--MSPKRITLSTVGIPKMIKKLADDEVKFNLAVSLHSGINETRSKVMPINEKN 241
Query: 246 PLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIG 305
PLE L +ALK + ++ K+ EY++ GVND+E+ A L K + VNLI +NPI
Sbjct: 242 PLEDLADALKYWYHKTKSKVTYEYVVWRGVNDKERDADALVKFCKIIPSKVNLIEYNPID 301
Query: 306 SVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 350
+F+ +S+D ++ + + L + +I VR+ G+DI ACGQL
Sbjct: 302 E-GEFQQASEDALNMYIQKLEAA-DIVVKVRRSRGKDIDAACGQL 344
>gi|269468799|gb|EEZ80403.1| hypothetical protein Sup05_0839 [uncultured SUP05 cluster
bacterium]
Length = 358
Score = 197 bits (502), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 119/293 (40%), Positives = 171/293 (58%), Gaps = 18/293 (6%)
Query: 78 VTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPR---PGGPRSTLCISSQVGCKMGCNFC 134
V T L K+ + F ++++ LG N P R TLCISSQVGC + C FC
Sbjct: 61 VATLELPKISSQNFASDGLIKWLIDLGSDNHIEMVYIPEKDRGTLCISSQVGCSLACTFC 120
Query: 135 ATGTMGFKSNLSSGEIV-------EQLVHASRLSNIRNVVFMGMGEPLNNYAALVEAVR- 186
+TG GF NL++ EI+ E L H ++ I NVVFMGMGEPL N ++ A
Sbjct: 121 STGMQGFNRNLTTAEIIAQIIIANEHLSHENK--KISNVVFMGMGEPLLNEKSVYSACDL 178
Query: 187 IMTGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFP 246
++ L F +S +++T+ST G+V A+ + P ++LA+SLHAP ++R +++P + +P
Sbjct: 179 LLDDLAFGLSRRKVTISTSGVVPALYRMAQTTP-VSLAISLHAPDDELRDELVPINQKYP 237
Query: 247 LEKLMNALKEYQKNSQQK--IFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPI 304
+E+LM A K Y + Q+ I EY+MLDGVND +HA +L KLL VNLIPFNP
Sbjct: 238 IEELMAACKNYLTSGTQERHILFEYVMLDGVNDTMEHAKKLAKLLRGISAKVNLIPFNPF 297
Query: 305 GSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDK 357
+Q++TS + FQ +L + IRT R+ G+D+ GACGQL + DK
Sbjct: 298 PK-TQYKTSKAFTIKQFQDVLFQA-GIRTMTRRTRGEDVDGACGQLAGKVIDK 348
>gi|16078638|ref|NP_389457.1| ribosomal RNA large subunit methyltransferase N [Bacillus subtilis
subsp. subtilis str. 168]
gi|221309450|ref|ZP_03591297.1| hypothetical protein Bsubs1_08696 [Bacillus subtilis subsp.
subtilis str. 168]
gi|221313775|ref|ZP_03595580.1| hypothetical protein BsubsN3_08632 [Bacillus subtilis subsp.
subtilis str. NCIB 3610]
gi|221318699|ref|ZP_03599993.1| hypothetical protein BsubsJ_08566 [Bacillus subtilis subsp.
subtilis str. JH642]
gi|221322970|ref|ZP_03604264.1| hypothetical protein BsubsS_08672 [Bacillus subtilis subsp.
subtilis str. SMY]
gi|402775820|ref|YP_006629764.1| 2-vinyl bacteriochlorophyllide hydratase [Bacillus subtilis QB928]
gi|418033278|ref|ZP_12671755.1| hypothetical protein BSSC8_26990 [Bacillus subtilis subsp. subtilis
str. SC-8]
gi|452914598|ref|ZP_21963225.1| 23S rRNA methyltransferase [Bacillus subtilis MB73/2]
gi|3287951|sp|O34617.1|RLMN_BACSU RecName: Full=Probable dual-specificity RNA methyltransferase RlmN;
AltName: Full=23S rRNA
(adenine(2503)-C(2))-methyltransferase; AltName:
Full=23S rRNA m2A2503 methyltransferase; AltName:
Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=tRNA (adenine(37)-C(2))-methyltransferase;
AltName: Full=tRNA m2A37 methyltransferase
gi|2337804|emb|CAA74265.1| YloN protein [Bacillus subtilis subsp. subtilis str. 168]
gi|2633947|emb|CAB13448.1| 23S rRNA m2A2503 methyltransferase [Bacillus subtilis subsp.
subtilis str. 168]
gi|351469426|gb|EHA29602.1| hypothetical protein BSSC8_26990 [Bacillus subtilis subsp. subtilis
str. SC-8]
gi|402481002|gb|AFQ57511.1| 23S rRNA m2A2503 methyltransferase [Bacillus subtilis QB928]
gi|407958982|dbj|BAM52222.1| ribosomal RNA large subunit methyltransferase N [Synechocystis sp.
PCC 6803]
gi|407964559|dbj|BAM57798.1| ribosomal RNA large subunit methyltransferase N [Bacillus subtilis
BEST7003]
gi|452117018|gb|EME07413.1| 23S rRNA methyltransferase [Bacillus subtilis MB73/2]
Length = 363
Score = 197 bits (502), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 113/328 (34%), Positives = 184/328 (56%), Gaps = 27/328 (8%)
Query: 31 IWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHSVVDSSDDVTTKLLVKLQNGG 90
I++++ E +++ +L L ++F LT+ +V +S D T K L +L +G
Sbjct: 45 IFEWLYEKRVSSFEDMTNLSKDLREKLNTRF-VLTTLKTAVKQTSQDGTMKFLFELHDGY 103
Query: 91 FVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEI 150
+E V+MR++ +++C+++QVGC++GC FCA+ G K NL +GEI
Sbjct: 104 TIETVLMRHEYG--------------NSVCVTTQVGCRIGCTFCASTLGGLKRNLEAGEI 149
Query: 151 VEQLVHASRL-----SNIRNVVFMGMGEPLNNYAALVEAVRIMT---GLPFQVSPKRITV 202
V Q+V + + +VV MG+GEP +N+ ++ ++I+ GL + + ITV
Sbjct: 150 VAQVVKVQKALDETDERVSSVVIMGIGEPFDNFNEMLAFLKIINHDKGL--NIGARHITV 207
Query: 203 STVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQ 262
ST GI+ I +F +N A+SLHAP ++R ++MP RA+ L LM A+K Y +
Sbjct: 208 STSGIIPKIYEFADQQMQINFAISLHAPNTEIRSRLMPINRAYKLPDLMEAVKYYINKTG 267
Query: 263 QKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQ 322
++I EY + GVND+ +HA +L LLE + VNLIP N + RT D++ +F+
Sbjct: 268 RRISFEYGLFGGVNDQVEHAEELADLLEGVKCHVNLIPVNYVPERDYVRTPR-DQIFAFE 326
Query: 323 KILRGSYNIRTTVRKQMGQDISGACGQL 350
K L+ S + T+R++ G DI ACGQL
Sbjct: 327 KTLK-SRGVNVTIRREQGHDIDAACGQL 353
>gi|357492233|ref|XP_003616405.1| Ribosomal RNA large subunit methyltransferase N [Medicago
truncatula]
gi|355517740|gb|AES99363.1| Ribosomal RNA large subunit methyltransferase N [Medicago
truncatula]
Length = 431
Score = 197 bits (502), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 134/361 (37%), Positives = 199/361 (55%), Gaps = 29/361 (8%)
Query: 17 EFEKAGIK-QHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLR-SKFKPLTSTLHSVVDS 74
+F + G + + LI+K ++ + EF +P A + L + +K S + + V +
Sbjct: 58 DFGQQGFRGKQLYHLIYKRKVK----DIQEFTQVPQAFRNELEEAGWKVGRSPIFNTVVA 113
Query: 75 SDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFC 134
+D T KLL+KL++ +E V + + G R T C+SSQVGC + C+FC
Sbjct: 114 TDG-TVKLLLKLEDNRLIETVGIPVEDE---------KGSVRLTACVSSQVGCPLKCSFC 163
Query: 135 ATGTMGFKSNLSSGEIVEQLVHASRL--SNIRNVVFMGMGEPLNNYAALVEAVRIMTGLP 192
ATG GF NL S EIVEQ++ + + NVVFMGMGEP+ N A++EA R +
Sbjct: 164 ATGKGGFSRNLRSHEIVEQVLAIEEVFKRRVTNVVFMGMGEPMLNLKAVLEAHRCLNK-D 222
Query: 193 FQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMN 252
Q+ + +T+STVG+ + I K + LAVSLHAP Q +R I+P+A+++PL+ LM
Sbjct: 223 IQIGQRMMTISTVGVPNTIKKLATHKLQSTLAVSLHAPNQKLRETIVPSAKSYPLDALMK 282
Query: 253 ALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETF--QVVVNLIPFNPIGSVSQF 310
KEY + +++ EY +L G+ND +A +L KLL + VNLIPFNPI S+F
Sbjct: 283 DCKEYFHETSRRVSFEYALLAGINDSVDNAVELAKLLHEYGSGYHVNLIPFNPIEG-SEF 341
Query: 311 RTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDKISAKSTPPVTDIE 370
R V +F L S I T+VR+ G D + ACGQL N + TP VT+ +
Sbjct: 342 RRPYRKAVQAFVNALESS-KITTSVRQTRGLDANAACGQLRNNF------QKTPLVTESD 394
Query: 371 D 371
+
Sbjct: 395 N 395
>gi|91200995|emb|CAJ74052.1| conserved hypothetical protein [Candidatus Kuenenia
stuttgartiensis]
Length = 368
Score = 197 bits (502), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 111/344 (32%), Positives = 186/344 (54%), Gaps = 27/344 (7%)
Query: 30 LIWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHSVVDSSDDVTTKLLVKLQNG 89
L W Y + ++++ +P L + +H++ ++S D T K L+ L +
Sbjct: 35 LSWMY--KKGATDFNQMSDIPLPFREKLEEAHNVFQTKIHTI-NTSQDGTEKFLIHLPDN 91
Query: 90 GFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGE 149
+E V++R G R T C+S+QVGC MGC+FCA+G +G NL +GE
Sbjct: 92 NLIECVLLR--------------DGKRRTACVSTQVGCAMGCSFCASGVLGLTRNLKTGE 137
Query: 150 IVEQLVHASRL----SNIRNVVFMGMGEPLNNYAALVEAVRIMTG-LPFQVSPKRITVST 204
I+EQ++H +I N+VFMG+GEPL NY +V+++RIM + + IT+ST
Sbjct: 138 IIEQVLHIKNHLPANEHITNIVFMGIGEPLANYDKVVKSLRIMNADWGLAIGARNITIST 197
Query: 205 VGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQK 264
VG++ I + + +NLA+SLHA + R +++P+ ++ ++ A +EY + +
Sbjct: 198 VGLIEGIRRLAKEGLKVNLAISLHASNDNTRNKLVPSNSKTGIKNILGAAQEYFNATHRD 257
Query: 265 IFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKI 324
I EY M+DG+ND +Q A L ++L+ Q VN++P NPI F V +F +
Sbjct: 258 ISFEYTMIDGINDSKQDAKLLAQILKGVQCNVNILPVNPIKE-GNFAPPVQKTVETFCTV 316
Query: 325 LRGSYNIRTTVRKQMGQDISGACGQLVVNLPDKISAKS---TPP 365
L+ ++ I TVR++ G +++ ACGQL + + + TPP
Sbjct: 317 LK-NHGIVATVRQRKGINVNAACGQLRLQIQKHCHGEKILHTPP 359
>gi|34498996|ref|NP_903211.1| hypothetical protein CV_3541 [Chromobacterium violaceum ATCC 12472]
gi|81654669|sp|Q7NS85.1|RLMN_CHRVO RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|34104846|gb|AAQ61203.1| conserved hypothetical protein [Chromobacterium violaceum ATCC
12472]
Length = 364
Score = 197 bits (502), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 134/372 (36%), Positives = 194/372 (52%), Gaps = 37/372 (9%)
Query: 17 EFEKAGIKQHFIPLIWKYVIENPNCEW------DEFPSLPSAAYSLLRSKFKPLTSTLHS 70
+F + QHF + K W D+F ++ A SL + + S
Sbjct: 7 DFNLDQLTQHFAEMGEKPFRAKQVMRWMHQMAEDDFDAMTDLAKSLRAKLHERAEVRVPS 66
Query: 71 VV--DSSDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCK 128
++ +S D T K L+ + G VE V + P R TLC+SSQVGC
Sbjct: 67 LMTGQASSDGTRKWLLDVGTGNGVETVFI--------------PEDDRGTLCVSSQVGCA 112
Query: 129 MGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN--------IRNVVFMGMGEPLNNYAA 180
+ C FC+TG GF NLS+ EI+ QL A++ + NVV MGMGEPL N+
Sbjct: 113 LECTFCSTGRQGFNRNLSTAEIIGQLWWANKAMGVTPKNERVVSNVVMMGMGEPLANFDN 172
Query: 181 LVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIM 239
+V A++IM + +S +R+T+ST G+V +++ + P + LAVSLHAP +R I+
Sbjct: 173 VVSAMQIMLDDHGYGLSRRRVTLSTSGLVPQMDRLREECP-VALAVSLHAPNDAIRDVIV 231
Query: 240 PAARAFPLEKLMNALKEY-QKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNL 298
P + +PL +LM A + Y +K + I EY+MLDGVND +HA QL +L+ NL
Sbjct: 232 PINKKYPLSELMAACRRYLEKAPRDFITFEYVMLDGVNDRPEHARQLLELVRDVPCKFNL 291
Query: 299 IPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDKI 358
IPFNP + S + SS++ + F++IL+ + TVRK G DI ACGQL + DK
Sbjct: 292 IPFNPFPN-SGYDRSSNNAIRIFREILQEQGYV-VTVRKTRGDDIDAACGQLAGQVQDKT 349
Query: 359 --SAKSTPPVTD 368
AK T + D
Sbjct: 350 RRQAKWTQIIED 361
>gi|350265888|ref|YP_004877195.1| radical SAM family protein [Bacillus subtilis subsp. spizizenii
TU-B-10]
gi|349598775|gb|AEP86563.1| radical SAM enzyme, Cfr family [Bacillus subtilis subsp. spizizenii
TU-B-10]
Length = 363
Score = 197 bits (502), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 113/328 (34%), Positives = 184/328 (56%), Gaps = 27/328 (8%)
Query: 31 IWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHSVVDSSDDVTTKLLVKLQNGG 90
I++++ E ++E +L L + F LT+ +V +S D T K L +L +G
Sbjct: 45 IFEWLYEKRVSSFEEMTNLSKDLREKLSTHF-VLTTLKTAVKQTSQDGTMKFLFELHDGY 103
Query: 91 FVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEI 150
+E V+MR++ +++C+++QVGC++GC FCA+ G K NL +GEI
Sbjct: 104 TIETVLMRHEYG--------------NSVCVTTQVGCRIGCTFCASTLGGLKRNLEAGEI 149
Query: 151 VEQLVHASRL-----SNIRNVVFMGMGEPLNNYAALVEAVRIMT---GLPFQVSPKRITV 202
V Q++ + + +VV MG+GEP +N+ ++ ++I+ GL + + ITV
Sbjct: 150 VAQVLKVQKALDETDERVSSVVIMGIGEPFDNFNEMLAFLKIINHDKGL--NIGARHITV 207
Query: 203 STVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQ 262
ST GI+ I +F +N A+SLHAP ++R ++MP RA+ L +LM A+K Y +
Sbjct: 208 STSGIIPKIYEFADQQMQINFAISLHAPNTEIRSRLMPINRAYKLPELMEAVKYYINKTG 267
Query: 263 QKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQ 322
++I EY + GVND+ +HA +L LLE + VNLIP N + RT D++ +F+
Sbjct: 268 RRISFEYGLFGGVNDQVEHAEELADLLEGIKCHVNLIPVNYVPERDYVRTPR-DQIFAFE 326
Query: 323 KILRGSYNIRTTVRKQMGQDISGACGQL 350
K L+ S + T+R++ G DI ACGQL
Sbjct: 327 KTLK-SRGVNVTIRREQGHDIDAACGQL 353
>gi|254786618|ref|YP_003074047.1| 23S rRNA m2A2503 methyltransferase [Teredinibacter turnerae T7901]
gi|237685384|gb|ACR12648.1| 23S rRNA m2A2503 methyltransferase [Teredinibacter turnerae T7901]
Length = 399
Score = 197 bits (502), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 124/365 (33%), Positives = 199/365 (54%), Gaps = 40/365 (10%)
Query: 12 GIIRAEFEKAGIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTST-LHS 70
G + A FE G K+ + K+V + ++ + ++ A LR + + +
Sbjct: 28 GRLEAFFESLGEKKFRATQVLKWVHQLGVTDFAQMTNISKA----LRERLADIAEVRIPE 83
Query: 71 VVDSSD--DVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCK 128
V++ D D T K L+++ G +E V + P G R TLC+SSQVGC
Sbjct: 84 VIEQWDSTDGTRKFLIRVGGGNAIETVFI--------------PDGERGTLCVSSQVGCS 129
Query: 129 MGCNFCATGTMGFKSNLSSGEIVEQLVHASRL------------SNIRNVVFMGMGEPLN 176
+ C+FCATG GF +L+S EI+ Q+ A++ + NVV MGMGEPL
Sbjct: 130 LDCSFCATGKQGFNRDLTSDEIIGQVWIAAKSFGQLQEGGARGDRKVTNVVLMGMGEPLL 189
Query: 177 NYAALVEAVRIMT-GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVR 235
N+ +VEA+ +M + +S +R+T+ST G+V +++ LA+SLHAP ++R
Sbjct: 190 NFENVVEAMHLMMHDNCYGISKRRVTLSTSGVVPQLDRL-GKYTDACLAISLHAPNDELR 248
Query: 236 CQIMPAARAFPLEKLMNALKEYQK---NSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETF 292
Q++P + +P+ +L+ + K Y + ++ +KI IEY ++D VND +HAH+L +LL+
Sbjct: 249 NQLVPINKKYPIAQLLASAKRYIEGLPDAHRKITIEYTLIDQVNDRIEHAHELVELLKDV 308
Query: 293 QVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVV 352
V +NLIPFNP G +S ++ S++ + FQ+IL + TVR G DI ACGQL
Sbjct: 309 PVKINLIPFNPFG-LSNYKKVSNNALRRFQQILIDA-GYTATVRTTRGDDIDAACGQLAG 366
Query: 353 NLPDK 357
+ D+
Sbjct: 367 QVNDR 371
>gi|224476327|ref|YP_002633933.1| ribosomal RNA large subunit methyltransferase N [Staphylococcus
carnosus subsp. carnosus TM300]
gi|254807211|sp|B9DPM7.1|RLMN_STACT RecName: Full=Probable dual-specificity RNA methyltransferase RlmN;
AltName: Full=23S rRNA
(adenine(2503)-C(2))-methyltransferase; AltName:
Full=23S rRNA m2A2503 methyltransferase; AltName:
Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=tRNA (adenine(37)-C(2))-methyltransferase;
AltName: Full=tRNA m2A37 methyltransferase
gi|222420934|emb|CAL27748.1| putative Radical SAM family protein [Staphylococcus carnosus subsp.
carnosus TM300]
Length = 364
Score = 197 bits (502), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 113/329 (34%), Positives = 184/329 (55%), Gaps = 29/329 (8%)
Query: 31 IWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHSVV-DSSDDVTTKLLVKLQNG 89
I++++ E DE +L +L+ F +TL +VV S D T K L +LQ+G
Sbjct: 46 IFQWLYEKRVDSIDEMTNLSKDLREVLKDNFT--MTTLETVVKQESRDGTIKFLFELQDG 103
Query: 90 GFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGE 149
+E V+MR++ +++C+++QVGC++GC FCA+ G K NL +GE
Sbjct: 104 YTIETVLMRHEYG--------------NSVCVTTQVGCRIGCTFCASTLGGLKRNLEAGE 149
Query: 150 IVEQLVHASRL-----SNIRNVVFMGMGEPLNNYAALVEAVRIMT---GLPFQVSPKRIT 201
IV Q++ ++ + +V MG+GEP NY +++ ++I+ GL + + IT
Sbjct: 150 IVSQVLTVQKVLDATDERVSQIVIMGIGEPFENYDEMMDFLKIVNYDNGL--NIGARHIT 207
Query: 202 VSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNS 261
VST GI+ I F + +N AVSLHA ++R ++MP RA+ ++KLM A++ YQ+ +
Sbjct: 208 VSTSGIIPRIYDFAEEDIQINFAVSLHAANDEIRSKLMPINRAYSIDKLMEAIQYYQEKT 267
Query: 262 QQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSF 321
++I EY + GVND+ HA +L L++ VNLIP N + + +T +D + F
Sbjct: 268 NRRITFEYGLFGGVNDQLTHARELAHLIQNLNCHVNLIPVNHVPERNYVKTPKED-IFKF 326
Query: 322 QKILRGSYNIRTTVRKQMGQDISGACGQL 350
+K L+ I T+R++ G DI ACGQL
Sbjct: 327 EKELK-RLGINATIRREQGSDIDAACGQL 354
>gi|407715866|ref|YP_006837146.1| ribosomal RNA large subunit methyltransferase N [Cycloclasticus sp.
P1]
gi|407256202|gb|AFT66643.1| Ribosomal RNA large subunit methyltransferase N [Cycloclasticus sp.
P1]
Length = 359
Score = 197 bits (502), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 116/289 (40%), Positives = 171/289 (59%), Gaps = 23/289 (7%)
Query: 75 SDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFC 134
SDD T K +++L +E V + P G R TLC+SSQVGC + C FC
Sbjct: 75 SDDGTYKWVLELDGQNRIETVFI------------PEEG--RGTLCVSSQVGCALECTFC 120
Query: 135 ATGTMGFKSNLSSGEIVEQLVHASRL----SNIRNVVFMGMGEPLNNYAALVEAVRIMT- 189
+T T GF NLS EI+ Q+ A + +N+ NVV MGMGEPL N+ V A+ +M
Sbjct: 121 STATQGFNRNLSVAEIIGQVWVAVKALKGKANLTNVVMMGMGEPLLNFNNTVTALNLMMD 180
Query: 190 GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEK 249
+ ++ +R+TVST G+V A+ + +++ +LAVSLHAP ++R +++P + +P+ +
Sbjct: 181 DFAYGLAKRRVTVSTSGVVPAMYRL-AEVSDASLAVSLHAPNDELRNELVPINKKYPIAE 239
Query: 250 LMNALKEYQKNSQ-QKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVS 308
L+ A K Y K + +KI EY+ML GVND + AH+L +LL VNLIPFNP + +
Sbjct: 240 LLEACKYYIKGEKRRKITFEYVMLSGVNDSVEQAHELKRLLADVPSKVNLIPFNPFPN-T 298
Query: 309 QFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDK 357
++ SS++ + F +L+ + I TT RK G DI ACGQLV + DK
Sbjct: 299 HYKRSSNNAIHRFTNVLKEAGLI-TTTRKTRGDDIDAACGQLVGKVKDK 346
>gi|402572536|ref|YP_006621879.1| 2-vinyl bacteriochlorophyllide hydratase [Desulfosporosinus
meridiei DSM 13257]
gi|402253733|gb|AFQ44008.1| 23S rRNA m2A2503 methyltransferase [Desulfosporosinus meridiei DSM
13257]
Length = 354
Score = 197 bits (502), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 111/330 (33%), Positives = 182/330 (55%), Gaps = 26/330 (7%)
Query: 31 IWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHSVVDSSDDVTTKLLVKLQNGG 90
+W ++ + E L LL F L S S D T K L KL +
Sbjct: 31 VWDWLYRKRVATFSEMTDLNPECLELLTDHF-TLQSLREHTSQESVDGTIKFLFKLPDEN 89
Query: 91 FVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEI 150
+E V+MR+ S++C+++QVGC +GC+FCA+G + +LS EI
Sbjct: 90 LIETVLMRHKFG--------------SSVCVTTQVGCNIGCSFCASGLLTKHRDLSGSEI 135
Query: 151 VEQLV-------HASRLSNIRNVVFMGMGEPLNNYAALVEAVRIMTGLPFQVSPKR-ITV 202
VEQ++ +A + + +VV MG+GEP +NY +++A+RI+ P R IT+
Sbjct: 136 VEQIMKVQEYMDNAHQGEKVSHVVVMGIGEPFDNYINVMDALRIIIDHKGLAIPGRGITI 195
Query: 203 STVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQ 262
ST G+ I +F +NLA+SLHAP ++R QIM R +PLEK++ A++ Y ++
Sbjct: 196 STSGLADKIYEFADSDLKVNLAISLHAPTNELREQIMKINRVYPLEKIIPAVEYYLAKTK 255
Query: 263 QKIFIEYIMLDGVNDEEQHAHQLGKLLETFQ--VVVNLIPFNPIGSVSQFRTSSDDKVSS 320
+++ +EYI+L +ND+ +HA QL L++ Q + +NLIP+NP+ Q++ S + + +
Sbjct: 256 RRVTLEYILLKDLNDQREHALQLASLIKNIQQLININLIPYNPVDEHPQYQRSDHETMLA 315
Query: 321 FQKILRGSYNIRTTVRKQMGQDISGACGQL 350
F +L+ + I ++R + G+DI ACGQL
Sbjct: 316 FYDVLK-KHGINCSIRLEHGRDIEAACGQL 344
>gi|269837848|ref|YP_003320076.1| radical SAM enzyme, Cfr family [Sphaerobacter thermophilus DSM
20745]
gi|269787111|gb|ACZ39254.1| radical SAM enzyme, Cfr family [Sphaerobacter thermophilus DSM
20745]
Length = 347
Score = 197 bits (502), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 126/349 (36%), Positives = 192/349 (55%), Gaps = 34/349 (9%)
Query: 16 AEFEKA----GIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKF--KPLTSTLH 69
AE E+ G+ ++ I+ + ++D LP + L ++ PLT
Sbjct: 9 AELEERLAADGVPRYRARQIFHWAYRQLAVDYDAMTVLPKTLRADLATRLPLTPLTPVRE 68
Query: 70 SVVDSSDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKM 129
V + D T K L + +G +E V+M Y R+T+C+S QVGC +
Sbjct: 69 --VQTDDGETIKTLFRTVDGQHIETVLMFYPD--------------RTTVCVSCQVGCAV 112
Query: 130 GCNFCATGTMGFKSNLSSGEIVEQLVHASRLS-----NIRNVVFMGMGEPLNNYAALVEA 184
GC+FCATG MG NL++GE+V Q+V A+R + + N+V MGMGEP NY A +
Sbjct: 113 GCSFCATGMMGLTRNLTAGEMVAQVVAAARRAREAGRTLTNIVMMGMGEPFQNYEATMRM 172
Query: 185 VRIM---TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPA 241
VRI+ G+ F +RITVST G+V I++ + + LAVSLHAP D+R ++P
Sbjct: 173 VRILHEEEGMNF--GARRITVSTSGLVPFIDRLAREPFQVKLAVSLHAPNDDLRSSLVPL 230
Query: 242 ARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPF 301
R +P+ +L+ A + Y + +++ EY+++DGVND + +A +L +LL VNLIP
Sbjct: 231 NRRYPIGELIAACRRYVGETGRRVTFEYVLIDGVNDSDANAEELARLLRGLLCHVNLIPL 290
Query: 302 NPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 350
NP + + F S ++++ F++ILR + I TVR G DIS ACGQL
Sbjct: 291 NPTPA-APFGRPSVERINRFEQILR-ARGIPATVRYSRGVDISAACGQL 337
>gi|347547863|ref|YP_004854191.1| hypothetical protein LIV_0379 [Listeria ivanovii subsp. ivanovii
PAM 55]
gi|346980934|emb|CBW84856.1| Conserved hypothetical protein, highly similar to B. subtilis YloN
protein [Listeria ivanovii subsp. ivanovii PAM 55]
Length = 367
Score = 197 bits (502), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 114/345 (33%), Positives = 186/345 (53%), Gaps = 30/345 (8%)
Query: 18 FEKAGIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHSVVDSSDD 77
E G K+ +W ++ ++E ++P LL + F + + VV S D
Sbjct: 18 LEAHGQKKFRATQVWDWLYRKRVKTFEEMTNVPKETIELLMANF-VMNTLEEQVVQESTD 76
Query: 78 VTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATG 137
TTK L KL +G +E V+M+ + L ++C+++QVGC +GC FCA+G
Sbjct: 77 GTTKYLFKLSDGNLIETVMMKQEYGL--------------SVCVTTQVGCNIGCTFCASG 122
Query: 138 TMGFKSNLSSGEIVEQLVHASRL-------SNIRNVVFMGMGEPLNNYAALVEAVRIMT- 189
+ +L++GEIVEQ+++ + +VV MG+GEP +NY +++ +R++
Sbjct: 123 LLKKSRDLTAGEIVEQIMNVQHYLDGRQLEERVSHVVVMGIGEPFDNYDNVMDFLRVINH 182
Query: 190 --GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPL 247
GL + + ITVST G+ I F ++ +NLA+SLHAP ++R IM + + +
Sbjct: 183 DKGLA--IGARHITVSTSGLAPRIIDFANEDFQVNLAISLHAPNNELRTSIMRINKTYSI 240
Query: 248 EKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQ--VVVNLIPFNPIG 305
EKLM A+ Y + + ++I EYIML GVND ++ A +L LL + VNLIP+NP+
Sbjct: 241 EKLMEAIHYYVEKTNRRITFEYIMLKGVNDHKKEALELAALLGEHRHLAYVNLIPYNPVD 300
Query: 306 SVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 350
+ S+ + V +F L+ + I +R++ G DI ACGQL
Sbjct: 301 EHIDYERSTKEDVLAFYDTLKKN-GINCVIRREHGTDIDAACGQL 344
>gi|157144549|ref|YP_001451868.1| ribosomal RNA large subunit methyltransferase N [Citrobacter koseri
ATCC BAA-895]
gi|205829699|sp|A8AD69.1|RLMN_CITK8 RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|157081754|gb|ABV11432.1| hypothetical protein CKO_00268 [Citrobacter koseri ATCC BAA-895]
Length = 388
Score = 197 bits (502), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 108/259 (41%), Positives = 156/259 (60%), Gaps = 16/259 (6%)
Query: 112 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN--------- 162
P R+TLC+SSQVGC + C FC+T GF NL EI+ Q+ A+++
Sbjct: 114 PEDDRATLCVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVGAAKVTGQRP 173
Query: 163 IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 221
I NVV MGMGEPL N +V A+ IM F +S +R+T+ST G+V A++K D+ +
Sbjct: 174 ITNVVMMGMGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDV 232
Query: 222 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDE 278
LA+SLHAP ++R +I+P R + +E ++A++ Y + S Q ++ IEY+MLD +ND
Sbjct: 233 ALAISLHAPNDEIRDEIVPINRKYNIETFLDAVRRYLQKSNANQGRVTIEYVMLDHINDG 292
Query: 279 EQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQ 338
+HAHQL +LL+ +NLIP+NP R SS+ ++ F K+L SY T VRK
Sbjct: 293 TEHAHQLAELLKDTPCKINLIPWNPFPGAPYGR-SSNSRIDRFSKVLM-SYGFTTIVRKT 350
Query: 339 MGQDISGACGQLVVNLPDK 357
G DI ACGQL ++ D+
Sbjct: 351 RGDDIDAACGQLAGDVIDR 369
>gi|418411637|ref|ZP_12984904.1| ribosomal RNA large subunit methyltransferase N [Staphylococcus
epidermidis BVS058A4]
gi|420163444|ref|ZP_14670191.1| 23S rRNA m2A2503 methyltransferase [Staphylococcus epidermidis
NIHLM095]
gi|420167575|ref|ZP_14674227.1| 23S rRNA m2A2503 methyltransferase [Staphylococcus epidermidis
NIHLM087]
gi|394235133|gb|EJD80707.1| 23S rRNA m2A2503 methyltransferase [Staphylococcus epidermidis
NIHLM095]
gi|394237603|gb|EJD83089.1| 23S rRNA m2A2503 methyltransferase [Staphylococcus epidermidis
NIHLM087]
gi|410892363|gb|EKS40157.1| ribosomal RNA large subunit methyltransferase N [Staphylococcus
epidermidis BVS058A4]
Length = 364
Score = 197 bits (501), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 107/313 (34%), Positives = 173/313 (55%), Gaps = 23/313 (7%)
Query: 44 DEFPSLPSAAYSLLRSKFKPLTSTLHSVVDSSDDVTTKLLVKLQNGGFVEAVIMRYDSSL 103
DE +L +L+ F +T+ V S D T K L +LQ+G +E V+MR++
Sbjct: 59 DEMTNLSKELRQILKDHF-AMTTLTTVVKQESKDGTIKFLFELQDGYTIETVLMRHEYG- 116
Query: 104 GKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRL--- 160
+++C+++QVGC++GC FCA+ G K NL +GEIV Q++ +
Sbjct: 117 -------------NSVCVTTQVGCRIGCTFCASTLGGLKRNLEAGEIVSQVLTVQKALDE 163
Query: 161 --SNIRNVVFMGMGEPLNNYAALVEAVRIMTGL-PFQVSPKRITVSTVGIVHAINKFHSD 217
+ +V MG+GEP NY +++ +RI+ + + ITVST GI+ I F +
Sbjct: 164 TNERVSQIVIMGIGEPFENYDEMMDFLRIVNDDNSLNIGARHITVSTSGIIPRIYDFAEE 223
Query: 218 LPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVND 277
+N AVSLH ++R ++MP RA+ ++KLM A++ YQ+ + +++ EY + GVND
Sbjct: 224 DIQINFAVSLHGAKDEIRSRLMPINRAYNVDKLMEAIRYYQEKTNRRVTFEYGLFGGVND 283
Query: 278 EEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRK 337
+ +HA +L L++ VNLIP N + + +T DD + F+K L+ I T+R+
Sbjct: 284 QLEHARELAHLIKDLNCHVNLIPVNHVPERNYVKTPKDD-IFKFEKELK-RLGINATIRR 341
Query: 338 QMGQDISGACGQL 350
+ G DI ACGQL
Sbjct: 342 EQGSDIDAACGQL 354
>gi|293374997|ref|ZP_06621292.1| radical SAM enzyme, Cfr family [Turicibacter sanguinis PC909]
gi|325843362|ref|ZP_08167945.1| 23S rRNA m2A2503 methyltransferase [Turicibacter sp. HGF1]
gi|292646407|gb|EFF64422.1| radical SAM enzyme, Cfr family [Turicibacter sanguinis PC909]
gi|325489391|gb|EGC91764.1| 23S rRNA m2A2503 methyltransferase [Turicibacter sp. HGF1]
Length = 347
Score = 197 bits (501), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 112/313 (35%), Positives = 171/313 (54%), Gaps = 23/313 (7%)
Query: 44 DEFPSLPSAAYSLLRSKFKPLTSTLHSVVDSSDDVTTKLLVKLQNGGFVEAVIMRYDSSL 103
DE +LP L++ F +T+ + D TTK L +L +G +E V+MR+
Sbjct: 44 DEMSNLPKDLKGLMQESF-DVTTLKERKKQVASDGTTKFLFELSDGDLIETVLMRH---- 98
Query: 104 GKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRL--- 160
KY ++C+++QVGC++GC FCA+ G K NL +GEIV Q++ +
Sbjct: 99 -KYG---------CSVCVTTQVGCRIGCKFCASTLSGLKRNLQAGEIVAQVLRVQQYLDE 148
Query: 161 --SNIRNVVFMGMGEPLNNYAALVEAVRIMTGLP-FQVSPKRITVSTVGIVHAINKFHSD 217
+ ++V MG+GEP NY L + + I+ + + ITVST GIV I F
Sbjct: 149 SQERVSHIVVMGIGEPFENYENLTKFIEIINSEKGLNIGSRHITVSTSGIVPKIYNFADQ 208
Query: 218 LPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVND 277
P ++ AVSLHAP ++R Q+MP RA+PLEKLM A+K Y K + ++I EY ++ VND
Sbjct: 209 HPQVSFAVSLHAPTDELRTQLMPINRAYPLEKLMEAVKYYIKQTNRRITFEYGLIKNVND 268
Query: 278 EEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRK 337
+ A+QL L+ +NLIP N + F + + + F++ L+ + TVR+
Sbjct: 269 TVECANQLADLVGRLNCHINLIPVNYVPERG-FDRTPIEHIEKFEQTLK-KRGVNVTVRR 326
Query: 338 QMGQDISGACGQL 350
++G DI ACGQL
Sbjct: 327 ELGSDIDAACGQL 339
>gi|162453111|ref|YP_001615478.1| radical SAM superfamily protein [Sorangium cellulosum So ce56]
gi|205829655|sp|A9FFJ6.1|RLMN_SORC5 RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|161163693|emb|CAN94998.1| Radical SAM superfamily protein [Sorangium cellulosum So ce56]
Length = 389
Score = 197 bits (501), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 117/311 (37%), Positives = 174/311 (55%), Gaps = 36/311 (11%)
Query: 72 VDSSDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGK---------------------- 109
V S+D T KLL++L++G +E V++ S G
Sbjct: 73 VHRSEDGTRKLLLRLRDGATIETVLLPSVSGPGSQAQLDADAAAALDDDEDDDAAAEAGA 132
Query: 110 -PRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRL----SNIR 164
PR R T CIS+QVGC MGC FCA+G G K +L + EI Q++ + +R
Sbjct: 133 APRV---RVTQCISTQVGCAMGCGFCASGVAGLKRHLGAEEIAGQVLLGRAMLEEGEELR 189
Query: 165 NVVFMGMGEPLNNYAALVEAVRIMTGLP-FQVSPKRITVSTVGIVHAINKFHSDLPG-LN 222
NVV+MGMGEPL+NY A ++R++T +S +R+TVST G+V I + +D G +
Sbjct: 190 NVVYMGMGEPLHNYEATARSLRLLTHPEGINLSTRRVTVSTSGLVPEIARLGADFGGQIA 249
Query: 223 LAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHA 282
LA+SLHA + R +MP R PL++L+ AL+ Y +++I IEY ++ G ND+ A
Sbjct: 250 LAISLHAADDETRSALMPINRKHPLDELLAALRAYPLPRRRRITIEYTLVAGQNDDPAEA 309
Query: 283 HQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKIL-RGSYNIRTTVRKQMGQ 341
+L KLL V +NLIP NPI S + ++V++FQ++L + Y+ VR++ G
Sbjct: 310 RRLAKLLRGLPVKINLIPMNPI-EASSLGPPAQERVAAFQEVLTQAGYS--CFVRRRRGD 366
Query: 342 DISGACGQLVV 352
D+S ACGQLV+
Sbjct: 367 DVSAACGQLVL 377
>gi|87118480|ref|ZP_01074379.1| radical SAM enzyme, Cfr family protein [Marinomonas sp. MED121]
gi|86166114|gb|EAQ67380.1| radical SAM enzyme, Cfr family protein [Marinomonas sp. MED121]
Length = 378
Score = 197 bits (501), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 126/358 (35%), Positives = 198/358 (55%), Gaps = 40/358 (11%)
Query: 18 FEKAGIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHSVVDS--- 74
FE G K+ + K++ + ++D+ + A LR K K ++ V S
Sbjct: 28 FESIGEKKFRATQVLKWIHQKGADDFDQMTDVSKA----LRHKLKDISEIRAPEVVSQNI 83
Query: 75 SDDVTTKLLVKLQNGG--FVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCN 132
S+D T K +++ + GG VE V++ P G R+TLC+SSQVGC + C+
Sbjct: 84 SNDGTRKWIIRTEGGGNNCVETVLI--------------PDGDRATLCVSSQVGCSLDCS 129
Query: 133 FCATGTMGFKSNLSSGEIVEQLVHASRL---------SNIRNVVFMGMGEPLNNYAALVE 183
FC+TG GF NL+ E++ Q+ A + + NVV MGMGEPL N+ +V+
Sbjct: 130 FCSTGKQGFNRNLTPSEVIGQVWVAIKSFGPFDPNGPRRVTNVVMMGMGEPLMNFEPVVD 189
Query: 184 AVRIMTGL-PFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAA 242
A+ +M + +S +R+T+ST G+V I + ++ ++LA+SLHAP ++R ++P
Sbjct: 190 AMTLMMDDNAYGMSKRRVTLSTSGVVPKIYEL-AERTDVSLAISLHAPTNELRDVLVPIN 248
Query: 243 RAFPLEKLMNALKEYQKN--SQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIP 300
+ +P+ +L+ A + Y + ++ I IEY M+ GVND E+ A L KLL+T + +NLIP
Sbjct: 249 KKYPINELLGACQHYLTSLPDKRHITIEYTMMAGVNDSEEQARALSKLLKTLECKINLIP 308
Query: 301 FNPIGSVSQFRTSSDDKVSSFQKILRGS-YNIRTTVRKQMGQDISGACGQLVVNLPDK 357
FNP + S + S+++V FQK+L Y + TVR G DI ACGQLV + DK
Sbjct: 309 FNPFPN-SGYDKPSNNQVRRFQKVLADDGYTV--TVRTTRGDDIDAACGQLVGDFHDK 363
>gi|224826446|ref|ZP_03699548.1| radical SAM enzyme, Cfr family [Pseudogulbenkiania ferrooxidans
2002]
gi|347540922|ref|YP_004848347.1| radical SAM enzyme, Cfr family [Pseudogulbenkiania sp. NH8B]
gi|224601547|gb|EEG07728.1| radical SAM enzyme, Cfr family [Pseudogulbenkiania ferrooxidans
2002]
gi|345644100|dbj|BAK77933.1| radical SAM enzyme, Cfr family [Pseudogulbenkiania sp. NH8B]
Length = 364
Score = 197 bits (501), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 132/366 (36%), Positives = 187/366 (51%), Gaps = 39/366 (10%)
Query: 17 EFEKAGIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHS------ 70
+F A + HF + K W + A + + K L LH
Sbjct: 7 DFNLAQLTDHFAAMGEKPFRAKQVMRW--MHQMGEADFDAMTDIAKSLRCKLHESAEVRV 64
Query: 71 ----VVDSSDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVG 126
V +S D T K L+ + G VE V + P R TLCISSQVG
Sbjct: 65 PDLMVEQASSDGTRKWLLDVGTGNGVETVFI--------------PEDDRGTLCISSQVG 110
Query: 127 CKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN--------IRNVVFMGMGEPLNNY 178
C + C FC+TG GF NLS+ EI+ QL A++ I NVV MGMGEPL N+
Sbjct: 111 CALECTFCSTGRQGFNRNLSTAEIIGQLWWANKAMGVTPKNERVISNVVMMGMGEPLANF 170
Query: 179 AALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQ 237
+V A++IM + +S +R+TVST G+V +++ P + LAVSLHAP +R
Sbjct: 171 DNVVSALQIMLDDHGYGLSRRRVTVSTSGMVPQMDRLREACP-VALAVSLHAPNDAIRDV 229
Query: 238 IMPAARAFPLEKLMNALKEY-QKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVV 296
I+P + +PL +LM A + Y +K + + EY+MLD VND +HA QL +L++
Sbjct: 230 IVPINKKYPLRELMAACQRYLEKAPRDFVTFEYVMLDDVNDRPEHARQLIELVKDVPCKF 289
Query: 297 NLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPD 356
NLIPFNP + S + SS++ + F++IL+ + + TVRK G DI ACGQL + D
Sbjct: 290 NLIPFNPFPN-SGYERSSNNAIHRFREILQEAGYV-VTVRKTRGDDIDAACGQLAGQVQD 347
Query: 357 KISAKS 362
K K+
Sbjct: 348 KTRRKT 353
>gi|417958218|ref|ZP_12601134.1| ribosomal RNA large subunit methyltransferase N [Neisseria weaveri
ATCC 51223]
gi|343967280|gb|EGV35529.1| ribosomal RNA large subunit methyltransferase N [Neisseria weaveri
ATCC 51223]
Length = 362
Score = 197 bits (501), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 131/359 (36%), Positives = 192/359 (53%), Gaps = 37/359 (10%)
Query: 18 FEKAGIKQHFIPL---------IWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTL 68
F G+ +HF + + +++ + ++ E L + S L K + L
Sbjct: 8 FNLQGLTEHFQAMGEKPFRAKQVLRWIHQGGASDFAEMTDLAKSLRSKLEEKAEIAIPEL 67
Query: 69 HSVVDSSDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCK 128
+ SSD T K L+ + G VE V + P R TLCISSQVGC
Sbjct: 68 MTSQISSDG-TRKWLLDVGTGNGVETVFI--------------PEAERGTLCISSQVGCA 112
Query: 129 MGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN--------IRNVVFMGMGEPLNNYAA 180
+ C FC+TG GF NL++ EI+ QL A++ I NVV MGMGEPL N+
Sbjct: 113 LECTFCSTGRQGFNRNLTAAEIIGQLWWANKAMGVTPKNERVISNVVMMGMGEPLANFDN 172
Query: 181 LVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIM 239
+V A+ IM + +S +R+TVST G+V +++ +P + LAVSLHA +VR +I+
Sbjct: 173 VVTALSIMLDDHGYGLSRRRVTVSTSGMVPQMDRLKEVMP-VALAVSLHASNDEVRDEIV 231
Query: 240 PAARAFPLEKLMNALKEYQ-KNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNL 298
P + +PL +LM A + Y K + I EY+MLDGVND+ QHA++L +L++ NL
Sbjct: 232 PLNKKYPLRELMAACQRYLVKAPRDFITFEYVMLDGVNDKPQHAYELIELVKDVPCKFNL 291
Query: 299 IPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDK 357
IPFNP + S + SS++ + F+ IL+ + + TVRK G DI ACGQL + DK
Sbjct: 292 IPFNPFPN-SGYERSSNENIRIFRDILQQA-GLVVTVRKTRGDDIDAACGQLAGQVQDK 348
>gi|374324699|ref|YP_005077828.1| ribosomal RNA large subunit methyltransferase N [Paenibacillus
terrae HPL-003]
gi|357203708|gb|AET61605.1| ribosomal RNA large subunit methyltransferase N [Paenibacillus
terrae HPL-003]
Length = 362
Score = 197 bits (501), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 114/326 (34%), Positives = 178/326 (54%), Gaps = 27/326 (8%)
Query: 32 WKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHSVVD-SSDDVTTKLLVKLQNGG 90
W YV + N ++ E +L + L +F +T LH + S D T K L L +
Sbjct: 49 WLYV-KRVN-DFSEMTNLSKSLREKLEDQFSFVT--LHEITKLESKDGTVKFLFGLHDDH 104
Query: 91 FVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEI 150
+E VIMR++ +++C+++QVGC++GC FCA+ G K NL++GEI
Sbjct: 105 AIETVIMRHNYG--------------NSICVTTQVGCRIGCTFCASTLGGLKRNLTAGEI 150
Query: 151 VEQLVHASRL-----SNIRNVVFMGMGEPLNNYAALVEAVRIMTGLP-FQVSPKRITVST 204
Q+V A ++ + ++V MG GEP NY A + +R M + + ITVST
Sbjct: 151 TAQVVQAQKILDKTDERVSSIVIMGSGEPFENYEATMTFLRTMIHEKGLNIGQRHITVST 210
Query: 205 VGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQK 264
GIV I KF + +NLA+S+HAP +R ++MP R +P + +M +L+ Y + ++
Sbjct: 211 SGIVPNIYKFADEDTQINLAISIHAPNDALRSKLMPVNRRYPFQDVMESLRYYLAKTGRR 270
Query: 265 IFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKI 324
I EY ++ GVND+ +HA +L +L+ VNLIP N + RTS D + +FQ+I
Sbjct: 271 ISFEYALIGGVNDQAEHAEELADVLKDMLCHVNLIPVNHVPERKYVRTSRSD-IFNFQRI 329
Query: 325 LRGSYNIRTTVRKQMGQDISGACGQL 350
L + T+R++ G DI+ ACGQL
Sbjct: 330 L-AEKGVNVTIRREQGHDIAAACGQL 354
>gi|89901088|ref|YP_523559.1| hypothetical protein Rfer_2310 [Rhodoferax ferrireducens T118]
gi|123397164|sp|Q21W25.1|RLMN_RHOFD RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|89345825|gb|ABD70028.1| conserved hypothetical protein [Rhodoferax ferrireducens T118]
Length = 382
Score = 197 bits (501), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 131/355 (36%), Positives = 185/355 (52%), Gaps = 34/355 (9%)
Query: 19 EKAGIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHSVVDSSDDV 78
E+ G K++ +++++ + +D+ L + L+ + L S SSD
Sbjct: 18 ERLGEKRYRAVQLFRWIHQKGASNFDDMSDLAKSLREKLKVSAQVKAPDLISQHISSDG- 76
Query: 79 TTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGT 138
T K L + G VEAV + P R TLCISSQ GC MGC FC+TG
Sbjct: 77 TIKWLFDVGGGDAVEAVFI--------------PEEDRGTLCISSQAGCAMGCRFCSTGH 122
Query: 139 MGFKSNLSSGEIVEQLVHASRLSN---------IRNVVFMGMGEPLNNYAALVEAVRIM- 188
GF NL +GEI+ QL A I NVV MGMGEPL NYA LV A+R M
Sbjct: 123 QGFSRNLKTGEIIAQLWFAEHFLRKHLQRDERVISNVVMMGMGEPLQNYAELVPALRAML 182
Query: 189 TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLE 248
+ +S +R+TVST G+V +++ D P + LAVSLHAP +R ++P + + L
Sbjct: 183 DDHGYGLSRRRVTVSTSGVVPMMDRLARDCP-VALAVSLHAPNDLLRDDLVPLNKKYSLA 241
Query: 249 KLMNALKEYQKNSQQK-IFIEYIMLDGVNDEEQHAHQLGKLLETFQ-----VVVNLIPFN 302
+L+NA Y + + I EY ML+ VND+ +HA QL +L++ + NLIPFN
Sbjct: 242 ELLNACNRYLAYAPRDFITFEYCMLEDVNDQPEHAQQLVRLVQHYSSGGVWCKFNLIPFN 301
Query: 303 PIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDK 357
P S S+ +++ +F KIL + I TT+RK G DI ACGQL + D+
Sbjct: 302 PF-PASGLTRSTPERIQAFAKILSDA-GIVTTIRKTRGDDIDAACGQLAGEVKDR 354
>gi|306829710|ref|ZP_07462899.1| cfr family radical SAM enzyme [Streptococcus mitis ATCC 6249]
gi|304428061|gb|EFM31152.1| cfr family radical SAM enzyme [Streptococcus mitis ATCC 6249]
Length = 361
Score = 197 bits (501), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 120/358 (33%), Positives = 190/358 (53%), Gaps = 30/358 (8%)
Query: 22 GIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKF--KPLTSTLHSVVDSSDDVT 79
G K+ IW+++ ++E +L + L +F PL +V S D T
Sbjct: 21 GEKKFRADQIWEWLYRKRVQSFEEMTNLSKGLIAKLNEQFVVNPLK---QRIVQESADGT 77
Query: 80 TKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTM 139
K L +L +G +E V+MR L ++C+++QVGC +GC FCA+G +
Sbjct: 78 VKYLFELPDGMLIETVLMRQHYGL--------------SVCVTTQVGCNIGCTFCASGLI 123
Query: 140 GFKSNLSSGEIVEQLVHASRLSNIR-------NVVFMGMGEPLNNYAALVEAVR-IMTGL 191
+ +L++GEIV Q++ + + R ++V MG+GEP +NY ++ VR I
Sbjct: 124 KKQRDLNNGEIVAQIMLVQKYFDERGQDERVSHIVVMGIGEPFDNYNNVLNFVRTINDDK 183
Query: 192 PFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLM 251
+ + ITVST G+ H I F ++ +NLAVSLHAP D+R IM RAFP+EKL
Sbjct: 184 GMAIGARHITVSTSGLAHKIRDFANEGVQVNLAVSLHAPNNDLRSSIMKINRAFPIEKLF 243
Query: 252 NALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVV--VNLIPFNPIGSVSQ 309
A++ Y + + +++ EYIML+ VND + A +L +LL+ + + VNLIP+NP+ Q
Sbjct: 244 AAIEYYIETTNRRVTFEYIMLNEVNDGVEQALELAELLKNIKKLSYVNLIPYNPVSEHDQ 303
Query: 310 FRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDKISAKSTPPVT 367
+ S ++V +F L+ + VR++ G DI ACGQL N + K+ V
Sbjct: 304 YSRSPKERVMAFYDSLKKK-GVNCVVRQEHGTDIDAACGQLRSNTMKRDRQKAVAAVN 360
>gi|34541648|ref|NP_906127.1| ribosomal RNA large subunit methyltransferase N [Porphyromonas
gingivalis W83]
gi|419971176|ref|ZP_14486641.1| 23S rRNA m2A2503 methyltransferase [Porphyromonas gingivalis W50]
gi|81416860|sp|Q7MTB0.1|RLMN_PORGI RecName: Full=Probable dual-specificity RNA methyltransferase RlmN;
AltName: Full=23S rRNA
(adenine(2503)-C(2))-methyltransferase; AltName:
Full=23S rRNA m2A2503 methyltransferase; AltName:
Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=tRNA (adenine(37)-C(2))-methyltransferase;
AltName: Full=tRNA m2A37 methyltransferase
gi|34397966|gb|AAQ67026.1| conserved hypothetical protein TIGR00048 [Porphyromonas gingivalis
W83]
gi|392609195|gb|EIW92011.1| 23S rRNA m2A2503 methyltransferase [Porphyromonas gingivalis W50]
Length = 341
Score = 197 bits (501), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 111/296 (37%), Positives = 174/296 (58%), Gaps = 21/296 (7%)
Query: 70 SVVDSSDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKM 129
S V S D T K L + G FVE+V++ P G R+TLCISSQVGCKM
Sbjct: 65 SDVQCSVDGTKKYLFPVGEGRFVESVLI--------------PEGDRATLCISSQVGCKM 110
Query: 130 GCNFCATGTMGFKSNLSSGEIVEQLVHASRLSNIRNVVFMGMGEPLNNYAALVEAVRIMT 189
C FC TG G+ NLS+ EI+ Q+ + + N+V+MGMGEPL+N ++ ++ +T
Sbjct: 111 DCLFCMTGKQGWNGNLSAAEILNQIFSVDEAAELTNLVYMGMGEPLDNTDEVLRSIEALT 170
Query: 190 GLPFQV--SPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPL 247
P+ + SPKRITVST+G + +F ++ +LAVSLH+P + R ++MP +AFP+
Sbjct: 171 E-PWGMGWSPKRITVSTIG-AKGLERFLAE-SRCHLAVSLHSPFPEERRKLMPGEKAFPI 227
Query: 248 EKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSV 307
+ ++ ++ Y + Q+++ EYI+ DG+ND+ +HA +L +L +NLI F+ I +V
Sbjct: 228 MQTLDRIRAYDFSGQRRVSFEYIVFDGLNDDMRHADELAAILRGIPCRINLIRFHKIPAV 287
Query: 308 SQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDKISAKST 363
S R+S ++ +F+K + S+ T+R G+DI ACG L + + KS+
Sbjct: 288 S-LRSSDTARMEAFRKRME-SHGFTCTIRASRGEDIFAACGMLSTSKAESSEEKSS 341
>gi|419861070|ref|ZP_14383710.1| ribosomal RNA large subunit methyltransferase N [Corynebacterium
diphtheriae bv. intermedius str. NCTC 5011]
gi|387982754|gb|EIK56255.1| ribosomal RNA large subunit methyltransferase N [Corynebacterium
diphtheriae bv. intermedius str. NCTC 5011]
Length = 350
Score = 197 bits (501), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 126/320 (39%), Positives = 176/320 (55%), Gaps = 35/320 (10%)
Query: 49 LPSAAYSLLRSKFKPLTSTLHSVVDSSDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNG 108
LP+AA ++ P V + D T K L KL +G +E+V+MRY +
Sbjct: 49 LPAAAREKVKDALFPQLMQPVRAVQADDGETQKTLWKLHDGTLLESVLMRYPN------- 101
Query: 109 KPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHAS--------RL 160
R+TLCISSQ GC M C FCATG G NLS+GEIV+Q+ AS RL
Sbjct: 102 -------RATLCISSQAGCGMACPFCATGQGGLDRNLSTGEIVDQVRAASATMQAEGGRL 154
Query: 161 SNIRNVVFMGMGEPLNNYAALVEAVRIMTG-LP--FQVSPKRITVSTVGIVHAINKFHSD 217
SNI VFMGMGEPL NY +V AVR +T +P F +S + +TVSTVG+ AI K +
Sbjct: 155 SNI---VFMGMGEPLANYKRVVSAVRQITAPVPEGFGISQRNVTVSTVGLAPAIRKLADE 211
Query: 218 LPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVND 277
+ LAVSLH P ++R ++P + + ++++A++ Y S +++ IEY ++ VND
Sbjct: 212 DLSVTLAVSLHTPDDELRNTLVPTNNRWEVAEVLDAVRYYADRSGRRVSIEYALIRDVND 271
Query: 278 EEQHAHQLGKLLETF---QVVVNLIPFNPIGSVSQFRTSSDDKVSSF-QKILRGSYNIRT 333
+ A LGK L V VNLIP NP S++ S D+ F Q+++ + +
Sbjct: 272 QGWRADMLGKKLHKALGPLVHVNLIPLNPTPG-SKWDASPMDRQKEFVQRVI--AQGVTC 328
Query: 334 TVRKQMGQDISGACGQLVVN 353
TVR GQ+I+ ACGQL
Sbjct: 329 TVRDTRGQEIAAACGQLAAE 348
>gi|171912540|ref|ZP_02928010.1| hypothetical protein VspiD_15210 [Verrucomicrobium spinosum DSM
4136]
Length = 368
Score = 197 bits (501), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 121/311 (38%), Positives = 173/311 (55%), Gaps = 23/311 (7%)
Query: 49 LPSAAYSLLRSKFKPLTSTLHSVVDSSDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNG 108
LP+ + S F +TL + S+D T KLL++L +G VE+V+M
Sbjct: 61 LPANLVQHIHSTFPATVATL-AQRQVSEDGTCKLLLRLPDGRTVESVLM----------- 108
Query: 109 KPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN-----I 163
P R+ CISSQVGC MGC+FCAT GF+ NL+SGEIVEQ +H R + +
Sbjct: 109 -PDYHPERAAGCISSQVGCAMGCDFCATTQTGFERNLTSGEIVEQFIHLRREARGAGRAL 167
Query: 164 RNVVFMGMGEPLNNYAALVEAVRIMTGLPF-QVSPKRITVSTVGIVHAINKFHSDLPGLN 222
R VVFMGMGEP+ N ++ AV M + +++T+STVGIV I + G++
Sbjct: 168 RTVVFMGMGEPMLNLRHVLPAVERMADPRLGALGWRQVTISTVGIVPGIEELTEANLGVH 227
Query: 223 LAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHA 282
LAVSLHAP + R I+P R FP++ ++ A YQ+ S + I+Y +L+GVND A
Sbjct: 228 LAVSLHAPDDETRTAILPMGRRFPVQDILEAADRYQEKSGRITTIQYCLLEGVNDSLNQA 287
Query: 283 HQLGKLLETFQVVVNLIPFNPIGSVSQFRT---SSDDKVSSFQKILRGSYNIRTTVRKQM 339
L L++ ++ +NL+ +NP G + RT SS ++ SF LR + +R+
Sbjct: 288 RDLANLMKDRRMHINLLRYNPTGLSLKGRTYAPSSMEQTESFLATLRECGAV-AHLRRAR 346
Query: 340 GQDISGACGQL 350
G DI ACGQL
Sbjct: 347 GPDIDAACGQL 357
>gi|37521648|ref|NP_925025.1| hypothetical protein gll2079 [Gloeobacter violaceus PCC 7421]
gi|81709852|sp|Q7NIV3.1|RLMN_GLOVI RecName: Full=Probable dual-specificity RNA methyltransferase RlmN;
AltName: Full=23S rRNA
(adenine(2503)-C(2))-methyltransferase; AltName:
Full=23S rRNA m2A2503 methyltransferase; AltName:
Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=tRNA (adenine(37)-C(2))-methyltransferase;
AltName: Full=tRNA m2A37 methyltransferase
gi|35212646|dbj|BAC90020.1| gll2079 [Gloeobacter violaceus PCC 7421]
Length = 348
Score = 197 bits (501), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 109/280 (38%), Positives = 164/280 (58%), Gaps = 19/280 (6%)
Query: 73 DSSDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCN 132
++ D T K L+ +G VE V + P R T+C+SSQVGC M C
Sbjct: 70 SAAADGTIKYLLAGADGETVETVGI--------------PAAERLTVCVSSQVGCPMACR 115
Query: 133 FCATGTMGFKSNLSSGEIVEQL--VHASRLSNIRNVVFMGMGEPLNNYAALVEAVRIMTG 190
FCATG GF NL EIV+Q+ V + +VVFMGMGEPL N A+V+A+R++ G
Sbjct: 116 FCATGQSGFARNLGVHEIVDQVLTVQEGFGRRVSHVVFMGMGEPLLNLGAVVQALRVLNG 175
Query: 191 LPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKL 250
+ ++ITVSTVG+ I + + + LAVSLHAP QD+R +++P A+ +P+E+L
Sbjct: 176 -DIGIGQRQITVSTVGVPGQIRRLGTYKLQITLAVSLHAPNQDLRLKLIPTAQHYPIEEL 234
Query: 251 MNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQF 310
+ ++Y + + +++ EY +L G+NDE HA +L +L FQ VNLIP+NPI V ++
Sbjct: 235 LEDCRDYVETTNRRVSFEYTLLAGINDEPHHARELAAILRGFQSHVNLIPYNPIEGV-EY 293
Query: 311 RTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 350
+ +V +F++ L + I +VR G + + ACGQL
Sbjct: 294 ERPGEARVRAFERELV-RHKIAASVRHTRGLEEAAACGQL 332
>gi|422344989|ref|ZP_16425912.1| cfr family radical SAM enzyme [Selenomonas noxia F0398]
gi|355376131|gb|EHG23392.1| cfr family radical SAM enzyme [Selenomonas noxia F0398]
Length = 346
Score = 197 bits (501), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 115/341 (33%), Positives = 182/341 (53%), Gaps = 27/341 (7%)
Query: 21 AGIKQHFIPL-----IWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHSVVDSS 75
A +++H IP I +++ + +LP + L F + S + S+
Sbjct: 13 ASLREHQIPRFRADQIVRWMYQRGAVSLHAMDNLPKELRTRLAEIFSIERPAVISCLHSA 72
Query: 76 DDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCA 135
D T KLL + +G E V+MR+ +++CIS+Q GC+MGC FCA
Sbjct: 73 DGATIKLLYEFADGQTAETVLMRHAYG--------------NSVCISTQAGCRMGCAFCA 118
Query: 136 TGTMGFKSNLSSGEIVEQLVHASRL-----SNIRNVVFMGMGEPLNNYAALVEAVRIM-T 189
+ G + NL++GEI Q++ + ++ +V MG GEPL NY +V A+R++
Sbjct: 119 STLNGLQRNLTAGEIAAQVIGIADFLRAEGGHVDTIVVMGSGEPLENYDNVVAALRLLHE 178
Query: 190 GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEK 249
+S + IT+ST GIV I + + ++L++SLHAP +++R +IMP R +PL
Sbjct: 179 DYTIGLSYRGITLSTSGIVPGIERLAEEGIPISLSISLHAPTEELRSEIMPVNRMYPLAD 238
Query: 250 LMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQ 309
++ A + Y + +++++ EYI++ VND + A QL KLL VNLIP NP+ S
Sbjct: 239 VLRAARFYAERTKRRVTYEYILIRDVNDGPREAEQLAKLLRGQLASVNLIPINPVAERSL 298
Query: 310 FRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 350
FR + FQKIL +I T+R++MG DI ACGQL
Sbjct: 299 FR-PDKAAIRRFQKIL-AQRHITATLRREMGTDIQAACGQL 337
>gi|404497533|ref|YP_006721639.1| ribosomal RNA large subunit methyltransferase N [Geobacter
metallireducens GS-15]
gi|418065123|ref|ZP_12702498.1| radical SAM enzyme, Cfr family [Geobacter metallireducens RCH3]
gi|123742801|sp|Q39S71.1|RLMN_GEOMG RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|78195136|gb|ABB32903.1| 23S rRNA (2-methyl-A2503)-methyltransferase [Geobacter
metallireducens GS-15]
gi|373562755|gb|EHP88962.1| radical SAM enzyme, Cfr family [Geobacter metallireducens RCH3]
Length = 346
Score = 197 bits (501), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 118/289 (40%), Positives = 163/289 (56%), Gaps = 22/289 (7%)
Query: 75 SDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFC 134
S D T K L +L++G VE+V++ P R+TLCISSQVGC M C FC
Sbjct: 76 SRDGTRKYLFRLEDGNTVESVLI--------------PEEDRTTLCISSQVGCAMACEFC 121
Query: 135 ATGTMGFKSNLSSGEIVEQLVHASRLSNIRNVVFMGMGEPLNNYAALVEAVRIM---TGL 191
TGT NL++GEIV Q+ R +RN+VFMGMGEPL N +V+A++I+ GL
Sbjct: 122 LTGTFRLTRNLTAGEIVNQICAVRRDVPVRNIVFMGMGEPLANLDNVVKALKIILHDDGL 181
Query: 192 PFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLM 251
F S +R+TVST G+V + + ++ +NLAVSL+A +VR +IMP R +PL L+
Sbjct: 182 QF--STRRVTVSTSGLVPEMERLGREVT-VNLAVSLNATTDEVRDRIMPVNRRYPLRLLL 238
Query: 252 NALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFR 311
+A + Y ++KI IEY+M+ G+ND + A +L KLL +NLIPFN S F+
Sbjct: 239 DACRSYPLPGRRKITIEYVMIKGLNDSLEDAKRLVKLLSDISSKINLIPFNEHDGCS-FK 297
Query: 312 TSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDKISA 360
+ + F L S + R G DIS ACGQL L +S
Sbjct: 298 SPDQGAIDVFHSYLL-SKHFTVITRSSRGSDISAACGQLKGKLDKNVSG 345
>gi|406659195|ref|ZP_11067333.1| cfr family radical SAM enzyme [Streptococcus iniae 9117]
gi|405577304|gb|EKB51452.1| cfr family radical SAM enzyme [Streptococcus iniae 9117]
Length = 360
Score = 197 bits (501), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 121/357 (33%), Positives = 196/357 (54%), Gaps = 36/357 (10%)
Query: 22 GIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKF--KPLTSTLHSVVDSSDDVT 79
G K+ IW ++ + +DE ++ LL + F PL V S D T
Sbjct: 21 GQKKFRATQIWDWLYKKRVQSFDEMTNISKDFIELLNTHFCVNPLK---QRTVQESADGT 77
Query: 80 TKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTM 139
K L +L +G +E V+MR ++ G+ ++C+++QVGC +GC FCA+G +
Sbjct: 78 VKYLFELPDGMLIETVLMR------QHYGQ--------SVCVTTQVGCNIGCTFCASGLI 123
Query: 140 GFKSNLSSGEIVEQLVHASRLSNIR-------NVVFMGMGEPLNNYAALVEAVRIMT--- 189
+ +L++GEI Q++ + + R +VV MG+GEP +NY +++ +R +
Sbjct: 124 KKQRDLTNGEITAQIMLVQKYFDERGKDERVSHVVVMGIGEPFDNYDNVMKFLRTINDDN 183
Query: 190 GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEK 249
GL + + ITVST G+ H I F ++ +NLAVSLHAP ++R IM R+FPLEK
Sbjct: 184 GLA--IGARHITVSTSGLAHKIRDFANEGVQVNLAVSLHAPNNELRSSIMRINRSFPLEK 241
Query: 250 LMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVV--VNLIPFNPIGSV 307
L A++ Y + + +++ EYIML+ VND + A +L L + + + VNLIP+NP+
Sbjct: 242 LFAAIEYYIETTNRRVIFEYIMLNEVNDGVEQAQELADLTKNIRKLSYVNLIPYNPVSEH 301
Query: 308 SQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNL--PDKISAKS 362
Q+ S +V +F +L+ + + VR++ G DI ACGQL N DK++AK+
Sbjct: 302 DQYSRSPKARVEAFYDVLKKN-GVNCVVRQEHGTDIDAACGQLRSNTMKKDKLAAKA 357
>gi|381210816|ref|ZP_09917887.1| hypothetical protein LGrbi_12898 [Lentibacillus sp. Grbi]
Length = 355
Score = 197 bits (501), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 109/339 (32%), Positives = 188/339 (55%), Gaps = 26/339 (7%)
Query: 22 GIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHSVVDSSDDVTTK 81
G ++ + +W ++ + ++ + ++ +LL F L +T + S+D T K
Sbjct: 22 GQRRFRVDQVWNWLYKKRISQFADMKNVNKETIALLEENF-LLHTTKEELRQESEDGTIK 80
Query: 82 LLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGF 141
L +L +G VE V+MR++ L ++C+++QVGC +GC+FCA+G +
Sbjct: 81 YLFRLSDGNLVETVLMRFNYGL--------------SVCVTTQVGCNIGCSFCASGLLRK 126
Query: 142 KSNLSSGEIVEQLVHASRLSNIR-------NVVFMGMGEPLNNYAALVEAVRIMTG-LPF 193
+L SGEIVEQ+++ + +++ ++V MG+GEP +N+ L++ + ++
Sbjct: 127 NRDLKSGEIVEQIMNVQKDMDVKGSDERVSHIVVMGIGEPFDNFNNLMDFINVVNDDAGL 186
Query: 194 QVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNA 253
+ + ITVST G+ H I + +NLA+SLHAP ++R IM RAFP+EKLM A
Sbjct: 187 NIGARHITVSTSGLAHKIYDWADTGTQVNLAISLHAPNNELRTSIMKINRAFPIEKLMKA 246
Query: 254 LKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVV--VNLIPFNPIGSVSQFR 311
+ Y ++ +++ EYIML VND ++ A +L +LL + + VNLIP+N + Q++
Sbjct: 247 VDYYLEHVNRRVTYEYIMLKDVNDHKEDAEELIELLSDKRHLSYVNLIPYNTVSEHDQYQ 306
Query: 312 TSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 350
S + +F + L+ S + VR + G DI ACGQL
Sbjct: 307 RSDSSTIQAFYETLKES-GLNCGVRWENGADIDAACGQL 344
>gi|407797785|ref|ZP_11144701.1| 23S rRNA (adenine-C2)-methyltransferase RlmN [Salimicrobium sp.
MJ3]
gi|407017785|gb|EKE30541.1| 23S rRNA (adenine-C2)-methyltransferase RlmN [Salimicrobium sp.
MJ3]
Length = 363
Score = 197 bits (501), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 108/331 (32%), Positives = 184/331 (55%), Gaps = 29/331 (8%)
Query: 31 IWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHSVVDSSDDVTTKLLVKLQNGG 90
+W+++ + ++D+ ++ + +L+ F + + + S+D T K L KL +G
Sbjct: 30 VWEWLYQKRVTDFDDMKNVNQSCIDVLKENF-TIETLSEEIKQESEDGTVKYLFKLHDGN 88
Query: 91 FVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEI 150
+E V+MR++ L ++C+++QVGC +GC+FCA+G + +L+ GEI
Sbjct: 89 IIETVLMRFNYGL--------------SVCVTTQVGCNIGCSFCASGVLRKNRDLTGGEI 134
Query: 151 VEQLVHAS-------RLSNIRNVVFMGMGEPLNNYAALVEAVRIMTGLP-FQVSPKRITV 202
EQ++ + + ++V MG+GEP +NY L++ + ++ + + ITV
Sbjct: 135 TEQIMKVQHDLDGKQKGERVSHIVVMGIGEPFDNYDNLIDFLNVVNDKKGLSIGARHITV 194
Query: 203 STVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQ 262
ST GI + +F + +NLA+S+HAP ++R QIM RA+PLEKLM A+ Y + +
Sbjct: 195 STSGIAPKMYEFADEGIQINLALSIHAPNNELRTQIMKINRAYPLEKLMPAIDYYLEKTN 254
Query: 263 QKIFIEYIMLDGVNDEEQHAHQLGKLL--ETFQVVVNLIPFNPIGSVSQFRTSSDDKVSS 320
++I EYI+L VND + AHQL LL + VNLIP+NP+ R+ + ++
Sbjct: 255 RRITFEYILLKDVNDHVKEAHQLADLLMDKKHLSYVNLIPYNPVADNPYERSDKEAILNF 314
Query: 321 FQKIL-RGSYNIRTTVRKQMGQDISGACGQL 350
+Q ++ RG I+ VR + G DI ACGQL
Sbjct: 315 YQTLMDRG---IKCGVRTEHGTDIDAACGQL 342
>gi|291458606|ref|ZP_06597996.1| radical SAM enzyme, Cfr family [Oribacterium sp. oral taxon 078
str. F0262]
gi|291419139|gb|EFE92858.1| radical SAM enzyme, Cfr family [Oribacterium sp. oral taxon 078
str. F0262]
Length = 362
Score = 197 bits (501), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 121/337 (35%), Positives = 182/337 (54%), Gaps = 33/337 (9%)
Query: 31 IWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHSVVDSSDDVTTKLLVKLQNGG 90
I+ ++ E +DE +L LR F+ ++ SS D T K + +L++G
Sbjct: 29 IYSWLHERLCASFDEMSNLSLPLREKLREHFRLFLPEPVRILSSSLDGTRKFIFRLEDGH 88
Query: 91 FVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEI 150
+E+V MRY R G +T+CISSQVGC+MGC FCA+ G NLS+ E+
Sbjct: 89 IIESVFMRY-----------RHG---NTVCISSQVGCRMGCRFCASTLEGLARNLSAAEM 134
Query: 151 VEQLVHASRL--SNIRNVVFMGMGEPLNNYAALVEAVRIMTG-LPFQVSPKRITVSTVGI 207
+ Q+ RL I NVV MG GEPL+NY L + VR+++ +S + +TVST G+
Sbjct: 135 LTQVYQIQRLLGERISNVVVMGSGEPLDNYENLTKFVRMISDERGLHLSQRNLTVSTCGL 194
Query: 208 VHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFI 267
V + + + L LA+SLHAP ++R ++MP A +PL +L+ A++ Y + + +++
Sbjct: 195 VPELFRLSEEGFQLTLALSLHAPNDEIRRRLMPIAARYPLSELLPAVRHYFERTGRRVSF 254
Query: 268 EYIMLDGVNDEEQHAHQLGKLLET--------------FQVVVNLIPFNPIGSVSQFRTS 313
EY ++ +ND + A L LL+ F + VNLIP NPI S R
Sbjct: 255 EYSVVRDLNDTREEAEALSSLLKKLRDEGEGSAGQQKGFPLHVNLIPVNPIRERSWERPE 314
Query: 314 SDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 350
++ FQ IL + I T+R++MG DISGACGQL
Sbjct: 315 R-RRIEDFQHILEKN-GISATIRREMGADISGACGQL 349
>gi|228470999|ref|ZP_04055844.1| radical SAM enzyme, Cfr family [Porphyromonas uenonis 60-3]
gi|228307396|gb|EEK16410.1| radical SAM enzyme, Cfr family [Porphyromonas uenonis 60-3]
Length = 341
Score = 197 bits (501), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 118/311 (37%), Positives = 171/311 (54%), Gaps = 24/311 (7%)
Query: 43 WDEFPSLPSAAYSLLRSKFKPLTSTLHSVVDSSDDVTTKLLVKLQNGGFVEAVIMRYDSS 102
WDE +L A +LL S ++ + H + +S D T K L GGFVE V++
Sbjct: 44 WDEMTNLSKKARALLASHYEIGRAAPH-LQQTSRDGTVKYLFA-AGGGFVETVMI----- 96
Query: 103 LGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN 162
P G R+TLC+SSQ GCKM C FC TG GF +NLS+ EI+ Q++ ++
Sbjct: 97 ---------PEGDRATLCVSSQRGCKMNCLFCMTGKQGFGANLSTSEILNQILSVPEVNE 147
Query: 163 IRNVVFMGMGEPLNNYAALVEAVRIMT---GLPFQVSPKRITVSTVGIVHAINKFHSDLP 219
+ N+VFMGMGEP++N L++ + +T GL +SPKRITVST+G+ + +F +
Sbjct: 148 LTNIVFMGMGEPMDNIDTLLQVITCLTDPQGLA--MSPKRITVSTIGLRPGLERFLEECT 205
Query: 220 GLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEE 279
+LA+SLH P+ + R IMP RA PL + L+ Y + Q+++ EYI+ G+ND
Sbjct: 206 -CHLAISLHNPLSEERLSIMPVERAMPLADTVALLRHYDWSRQRRLTFEYIVFSGLNDTP 264
Query: 280 QHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQM 339
+H L +LL VNLI ++ I + SSD + + I TT+R
Sbjct: 265 RHLAALKRLLAQLDCHVNLIRYHRIPHIDL--PSSDMTRMEWLRDWLCEAGIPTTIRTSR 322
Query: 340 GQDISGACGQL 350
G+DIS ACG L
Sbjct: 323 GEDISAACGML 333
>gi|222151049|ref|YP_002560203.1| ribosomal RNA large subunit methyltransferase N [Macrococcus
caseolyticus JCSC5402]
gi|222120172|dbj|BAH17507.1| conserved hypothetical protein [Macrococcus caseolyticus JCSC5402]
Length = 363
Score = 197 bits (501), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 116/328 (35%), Positives = 183/328 (55%), Gaps = 31/328 (9%)
Query: 32 WKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHSVV-DSSDDVTTKLLVKLQNGG 90
W YV + N ++E +L +L F +TL +VV S D T K L +LQ+G
Sbjct: 48 WLYV-KRVNS-FEEMSNLSKELRKVLEDNFT--MTTLKTVVKQESKDGTIKFLFELQDGY 103
Query: 91 FVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEI 150
+E V+MR+D +++C+++QVGC++GC FCA+ G K NL +GEI
Sbjct: 104 TIETVLMRHDYG--------------NSVCVTTQVGCRIGCTFCASTLGGLKRNLEAGEI 149
Query: 151 VEQLVHASRL-----SNIRNVVFMGMGEPLNNYAALVEAVRIMT---GLPFQVSPKRITV 202
V Q+++ + + +VV MG+GEP NY +++ ++++ GL + + ITV
Sbjct: 150 VAQVLNVQKALDEVEERVSHVVIMGIGEPFENYEEMMDFLKVINHDDGL--NIGARHITV 207
Query: 203 STVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQ 262
ST GI+ I F + +N A+SLH P D+R ++MP RA+ LEKLM +++ Y +
Sbjct: 208 STSGIIPRIYDFADEELQINFALSLHGPNNDIRSRLMPINRAYDLEKLMESIEYYVNKTG 267
Query: 263 QKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQ 322
++I EY + GVND+ HA +L +L++ VNLIP N + RT +D + F+
Sbjct: 268 RRITFEYGLFGGVNDQVHHAKELAQLIKHLNCHVNLIPVNHVPERDYVRTPKED-IFKFE 326
Query: 323 KILRGSYNIRTTVRKQMGQDISGACGQL 350
K L+ + I T+R++ G DI ACGQL
Sbjct: 327 KELKRN-GINATIRREHGSDIDAACGQL 353
>gi|78484965|ref|YP_390890.1| hypothetical protein Tcr_0620 [Thiomicrospira crunogena XCL-2]
gi|123741643|sp|Q31I07.1|RLMN_THICR RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|78363251|gb|ABB41216.1| radical SAM enzyme, Cfr family [Thiomicrospira crunogena XCL-2]
Length = 370
Score = 197 bits (501), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 120/294 (40%), Positives = 168/294 (57%), Gaps = 28/294 (9%)
Query: 75 SDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFC 134
S D T K L+++ N VEAV + P R TLCISSQVGC + C+FC
Sbjct: 79 SADGTIKWLLEVDNHNCVEAVFI--------------PEKSRGTLCISSQVGCALECSFC 124
Query: 135 ATGTMGFKSNLSSGEIVEQLVHASRLSN--------IRNVVFMGMGEPLNNYAALVEAVR 186
+TG GF NL + EIV Q+ A++ I NVVFMGMGEPL N R
Sbjct: 125 STGQQGFNRNLENWEIVAQMWVANKALGCKPKEERIISNVVFMGMGEPLLNVKHTFPTAR 184
Query: 187 I-MTGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAF 245
I M + +S +R+T+ST G+V AI+K L ++LA+SLHAP +R +++P + +
Sbjct: 185 ILMDDNAYGLSKRRVTISTAGVVPAIDKIKESL-DVSLAISLHAPNNALRDELVPINKKY 243
Query: 246 PLEKLMNALKEYQK--NSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNP 303
PLE LM AL Y + +S++ + +EY+MLD VND +HA QL +LL VNLIPFNP
Sbjct: 244 PLEVLMPALHRYVEGGHSKKHVTVEYVMLDHVNDRLEHAQQLIELLGDLPCKVNLIPFNP 303
Query: 304 IGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDK 357
+ + ++ SS++ V F+ L + + TVR+ G DI ACGQL + D+
Sbjct: 304 FPN-TDYKRSSNNAVHRFKDALMEA-GVNCTVRRTRGDDIDAACGQLAGKVKDR 355
>gi|313672236|ref|YP_004050347.1| 23S rRNA m(2)a-2503 methyltransferase [Calditerrivibrio
nitroreducens DSM 19672]
gi|312938992|gb|ADR18184.1| 23S rRNA m(2)A-2503 methyltransferase [Calditerrivibrio
nitroreducens DSM 19672]
Length = 350
Score = 197 bits (501), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 112/282 (39%), Positives = 166/282 (58%), Gaps = 26/282 (9%)
Query: 77 DVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCAT 136
D + K L +L++ +E+V ++ R TLC+S+QVGC+MGC FCAT
Sbjct: 75 DGSQKFLFELEDKNKIESVALK--------------DQDRITLCVSTQVGCRMGCAFCAT 120
Query: 137 GTMGFKSNLSSGEIVEQLVH-----ASRLSNIRNVVFMGMGEPLNNYAALVEAVRIMT-- 189
+GF +L++GEIV Q++ A+ + N+VFMGMGEPL+NY +V+A+ I+T
Sbjct: 121 AKIGFIRDLTAGEIVRQIMEVNEHLATNSEKVTNIVFMGMGEPLDNYHNVVKAIGIITDE 180
Query: 190 -GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLE 248
GL + S +++TVST G+V I++ +NLAVSL+A D+R IMP + F +E
Sbjct: 181 MGLGY--SHRKVTVSTSGVVDRIDELFKLKKQVNLAVSLNATTDDIRSAIMPINKKFNIE 238
Query: 249 KLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVS 308
KLM LK +++I IEY+M+ GVND A +L +LL + +NLI +N G
Sbjct: 239 KLMKKLKSLPIQKRKRITIEYVMIKGVNDTLDDAKRLVRLLNGLPIKINLIAYND-GGNE 297
Query: 309 QFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 350
+R + V SFQK L + I +RK +G++I GACGQL
Sbjct: 298 NYRAPDEQTVLSFQKYLVDKH-ITAFIRKSLGKNIEGACGQL 338
>gi|149926356|ref|ZP_01914617.1| hypothetical protein LMED105_13193 [Limnobacter sp. MED105]
gi|149824719|gb|EDM83933.1| hypothetical protein LMED105_13193 [Limnobacter sp. MED105]
Length = 379
Score = 197 bits (501), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 121/301 (40%), Positives = 166/301 (55%), Gaps = 31/301 (10%)
Query: 75 SDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFC 134
S D T K L + NG VE V + P R TLC+SSQ GC + C FC
Sbjct: 76 SKDGTRKWLFDVGNGDAVETVFI--------------PEERRGTLCVSSQAGCAVNCRFC 121
Query: 135 ATGTMGFKSNLSSGEIVEQLVHASRLSN------------IRNVVFMGMGEPLNNYAALV 182
+TG GF NLS+ EIV QL A+ L + NVV MGMGEPL NY ALV
Sbjct: 122 STGKQGFSRNLSTAEIVAQLWKANVLLREAGDRVYAQERPVTNVVMMGMGEPLLNYDALV 181
Query: 183 EAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPA 241
A+++M + +S +R+TVST G+V +++ D P + LAVSLHAP +R ++P
Sbjct: 182 PALQLMLDDTAYGLSRRRVTVSTSGVVPFMDRLSQDCP-VALAVSLHAPNDALRDHLVPL 240
Query: 242 ARAFPLEKLMNALKEYQKNSQQK-IFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIP 300
+ +PL +L++A Y K + + I EY+MLDGVND+ +HA QL ++ + NLIP
Sbjct: 241 NKKYPLRELLDACLRYLKFAPRDFITFEYVMLDGVNDKPEHAQQLLEIAKIVPCKFNLIP 300
Query: 301 FNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDKISA 360
FNP +++S + +F IL G+ + TTVRK G DI ACGQL + D+
Sbjct: 301 FNPFPESGLLKSTS-PAIKTFVDILGGA-GVVTTVRKTRGDDIDAACGQLAGEVRDRTKV 358
Query: 361 K 361
K
Sbjct: 359 K 359
>gi|309800021|ref|ZP_07694219.1| radical SAM enzyme, Cfr family [Streptococcus infantis SK1302]
gi|308116341|gb|EFO53819.1| radical SAM enzyme, Cfr family [Streptococcus infantis SK1302]
Length = 357
Score = 197 bits (501), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 119/356 (33%), Positives = 192/356 (53%), Gaps = 30/356 (8%)
Query: 20 KAGIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKF--KPLTSTLHSVVDSSDD 77
+ G K+ IW+++ ++E +L S L +F PL +V S D
Sbjct: 19 EQGEKKFRADQIWEWLYRKRVQSFEEMTNLSKDLISKLNDQFVVNPLK---QRIVQESAD 75
Query: 78 VTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATG 137
T K L +L +G +E V+MR L ++C+++QVGC +GC FCA+G
Sbjct: 76 GTVKYLFELPDGMLIETVLMRQHYGL--------------SVCVTTQVGCNIGCTFCASG 121
Query: 138 TMGFKSNLSSGEIVEQLVHASRLSNIR-------NVVFMGMGEPLNNYAALVEAVR-IMT 189
+ + +L++GEIV Q++ + + R ++V MG+GEP +NY ++ +R I
Sbjct: 122 LIKKQRDLNNGEIVAQIMLVQKYFDERGQDERVSHIVVMGIGEPFDNYNNVLNFIRTIND 181
Query: 190 GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEK 249
+ + ITVST G+ H I +F ++ +NLAVSLHAP ++R IM RAFP+EK
Sbjct: 182 DKGMAIGARHITVSTSGLAHKIREFANEGVQVNLAVSLHAPNNELRSSIMKINRAFPIEK 241
Query: 250 LMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVV--VNLIPFNPIGSV 307
L A++ Y + + +++ EYIML+ VND + A +L +LL+ + + VNLIP+NP+
Sbjct: 242 LFAAIEYYIETTNRRVTFEYIMLNEVNDGVEQALELAELLKNIKKLSYVNLIPYNPVSEH 301
Query: 308 SQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDKISAKST 363
Q+ S ++V +F L+ + VR++ G DI ACGQL N + KS+
Sbjct: 302 DQYSRSPKERVMAFYDTLKKK-GVNCVVRQEHGTDIDAACGQLRSNTMKRDRQKSS 356
>gi|320451516|ref|YP_004203612.1| radical SAM enzyme, Cfr family [Thermus scotoductus SA-01]
gi|320151685|gb|ADW23063.1| radical SAM enzyme, Cfr family [Thermus scotoductus SA-01]
Length = 349
Score = 197 bits (500), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 114/297 (38%), Positives = 168/297 (56%), Gaps = 26/297 (8%)
Query: 75 SDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFC 134
S D + K L L +G EAV M Y++ R T+C+SS VGC GC FC
Sbjct: 65 SRDGSVKYLFTLLDGKKTEAVYMPYEN--------------RKTVCLSSMVGCPAGCTFC 110
Query: 135 ATGTMGFKSNLSSGEIVEQLV---HASRLS--NIRNVVFMGMGEPLNNYAALVEAVRIM- 188
ATG +GF NL++ EI+ QL+ H +S +IRNVV MGMGEPL N +++A+R M
Sbjct: 111 ATGALGFGRNLTAAEILSQLLAIAHHQGISPRDIRNVVLMGMGEPLLNLGNVLKAIRTML 170
Query: 189 --TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFP 246
GL +SP+RIT+STVGI I++ + G+ LA+SLHAP + R +I+P A +
Sbjct: 171 HPKGL--AMSPRRITLSTVGIPKGIHRLAEEDLGVRLALSLHAPDDETRRKIIPTAHRYS 228
Query: 247 LEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGS 306
+ +++ A++ Y +++++ EY +L G+ND A L KLL+ VNLIPFNP
Sbjct: 229 VGEILEAVRHYYARTKRRVTFEYTLLKGLNDHPWQARLLAKLLKGISAHVNLIPFNPWEG 288
Query: 307 VSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDKISAKST 363
+ + + +F + LR I T++R GQD+ ACGQL + P ++ T
Sbjct: 289 -APVEGTPKAGILAFAEELR-RLGIPTSIRFSRGQDVGAACGQLALKAPKALTFTPT 343
>gi|410618485|ref|ZP_11329430.1| 23S rRNA (adenine2503-C2)-methyltransferase [Glaciecola polaris LMG
21857]
gi|410162027|dbj|GAC33568.1| 23S rRNA (adenine2503-C2)-methyltransferase [Glaciecola polaris LMG
21857]
Length = 380
Score = 197 bits (500), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 125/365 (34%), Positives = 196/365 (53%), Gaps = 46/365 (12%)
Query: 18 FEKAGIKQHFIPL---------IWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKP---LT 65
F +AG++++F + + K++ + ++D+ +L +LR K +
Sbjct: 17 FNRAGLREYFSSIGEKPFRADQMMKWIYQQGISDFDQMTNL----NKILREKLNAQCEIK 72
Query: 66 STLHSVVDSSDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQV 125
+ + ++ D T K +++L+ G VE V + P R+TLC+SSQV
Sbjct: 73 APEIAYQQAASDGTIKFVLRLEGGQEVETVWI--------------PDADRATLCVSSQV 118
Query: 126 GCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASR---LSN------IRNVVFMGMGEPLN 176
GC + C FC+T GF NLS EI+ Q+ + LSN I NVV MGMGEPL
Sbjct: 119 GCALECTFCSTAQQGFNRNLSVSEIIGQVWRVATTIGLSNDSSKRPITNVVMMGMGEPLL 178
Query: 177 NYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVR 235
N +V A+ +M L F +S +R+T+ST G+V A++ D + LA+SLHAP +R
Sbjct: 179 NLKNVVPAMELMLDDLAFGLSKRRVTLSTSGVVPALD-ILGDKIDVALAISLHAPDDKLR 237
Query: 236 CQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDEEQHAHQLGKLLETF 292
+++P + +P+++ + ++ Y S Q K+ +EY+ML+GVND AH L K+L
Sbjct: 238 DELVPVNKKYPIQEFLAGVRRYLAKSHANQGKVTVEYVMLNGVNDSTDQAHALAKVLADT 297
Query: 293 QVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVV 352
+NLIPFNP S + SS+ ++ F K+L SY + VRK G DI ACGQLV
Sbjct: 298 PCKLNLIPFNPYPG-SPYTRSSNSRIDRFAKVL-SSYGLMVVVRKTRGDDIDAACGQLVG 355
Query: 353 NLPDK 357
++ D+
Sbjct: 356 DVVDR 360
>gi|302386502|ref|YP_003822324.1| radical SAM enzyme, Cfr family [Clostridium saccharolyticum WM1]
gi|302197130|gb|ADL04701.1| radical SAM enzyme, Cfr family [Clostridium saccharolyticum WM1]
Length = 350
Score = 197 bits (500), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 119/326 (36%), Positives = 188/326 (57%), Gaps = 25/326 (7%)
Query: 31 IWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHSVVD---SSDDVTTKLLVKLQ 87
+++++ + +++E +LP+ SL + F+ T ++V+ S+ D T K L L
Sbjct: 31 LYEWMHQKLAADFNEMTNLPN---SLKETLFQQTELTSLAIVEEKISNIDGTRKYLFALS 87
Query: 88 NGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSS 147
+G +E+V+M+Y +++CISSQVGC+MGC FCA+ G + NLS
Sbjct: 88 DGNVIESVLMKYKHG--------------NSVCISSQVGCRMGCRFCASTLDGLERNLSP 133
Query: 148 GEIVEQLVHASRLSNIR--NVVFMGMGEPLNNYAALVEAVRIMTGLP-FQVSPKRITVST 204
E+++Q+ + + R NVV MG GEPL+NY LV+ VR++T +S + ITVST
Sbjct: 134 SEMLDQIYRIQKNTGERVSNVVVMGSGEPLDNYDHLVQFVRLLTDENGLNISQRNITVST 193
Query: 205 VGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQK 264
GIV I K + + LA+SLHAP +VR +MP A FPL+ +++A + Y + + ++
Sbjct: 194 CGIVPGILKLAEEDLQITLALSLHAPNDEVRKTLMPVANRFPLKDVLDACQTYFEKTGRR 253
Query: 265 IFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKI 324
+ EY ++ GVND + A L LL+ VNLIP NPI F S + +F+ +
Sbjct: 254 LTFEYSLVSGVNDNLKEASALAALLKGQHGHVNLIPVNPIKE-RNFVQSDRKAIEAFKNL 312
Query: 325 LRGSYNIRTTVRKQMGQDISGACGQL 350
L + I T+R++MG+DI+GACGQL
Sbjct: 313 LEKN-GINVTIRREMGRDINGACGQL 337
>gi|261401249|ref|ZP_05987374.1| radical SAM enzyme, Cfr family [Neisseria lactamica ATCC 23970]
gi|269208732|gb|EEZ75187.1| radical SAM enzyme, Cfr family [Neisseria lactamica ATCC 23970]
Length = 364
Score = 197 bits (500), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 131/356 (36%), Positives = 190/356 (53%), Gaps = 29/356 (8%)
Query: 12 GIIRAEFEKAGIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHSV 71
G+IR F G K + +++ ++ +DE L + L + L
Sbjct: 12 GLIR-HFADMGEKPFRAKQVMRWIHQSGAQNFDEMTDLAKSLRHKLNEQANIGIPKLMMS 70
Query: 72 VDSSDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGC 131
+SSD T K L+ + G VE V + P R TLCISSQVGC + C
Sbjct: 71 QESSDG-TRKWLLDVGTGNGVETVFI--------------PESDRGTLCISSQVGCALEC 115
Query: 132 NFCATGTMGFKSNLSSGEIVEQLVHASRLSN--------IRNVVFMGMGEPLNNYAALVE 183
FC+TG GF NL++ EI+ QL A++ I NVV MGMGEP+ N+ +V
Sbjct: 116 TFCSTGRQGFNRNLTAAEIIGQLWWANKAMGVTPKNERVISNVVMMGMGEPMANFDNVVT 175
Query: 184 AVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAA 242
++ IM + +S +R+TVST G+V +++ +P + LAVSLHA +VR QI+P
Sbjct: 176 SLSIMLDDHGYGLSRRRVTVSTSGMVPQMDRLRDVMP-VALAVSLHASNDEVRDQIVPLN 234
Query: 243 RAFPLEKLMNALKEYQ-KNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPF 301
+ +PL++LM A + Y K + I EY+MLDG+ND+ QHAH+L L++ NLIPF
Sbjct: 235 KKYPLKELMAACRRYLVKAPRDFITFEYVMLDGINDKAQHAHELINLVKDVPCKFNLIPF 294
Query: 302 NPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDK 357
NP + S + SS + + F+ IL+ + + TVRK G DI ACGQL + DK
Sbjct: 295 NPFPN-SGYERSSKENIRVFKDILQQAGFV-VTVRKTRGDDIDAACGQLAGQVQDK 348
>gi|406941482|gb|EKD73958.1| hypothetical protein ACD_45C00125G0007 [uncultured bacterium]
Length = 368
Score = 197 bits (500), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 129/365 (35%), Positives = 197/365 (53%), Gaps = 41/365 (11%)
Query: 12 GIIRAEFEK----AGIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTST 67
G+ R E E G K + I K++ C+ +L + LR K L +
Sbjct: 14 GLSRKEMEAFCITLGEKSYRATQILKWIHFQGVCDIQAMSNLSKS----LREKIADL-AE 68
Query: 68 LH----SVVDSSDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISS 123
+H + ++S D T K +++L +G +EAV + P R TLC+SS
Sbjct: 69 IHPPEVAYENTSPDGTHKWILRLTDGNCIEAVFI--------------PEKTRGTLCVSS 114
Query: 124 QVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRL---------SNIRNVVFMGMGEP 174
QVGC + C+FC+TG GF NL++ EI+ Q+ A R I NVV MGMGEP
Sbjct: 115 QVGCTLNCDFCSTGKQGFSRNLTTDEIIGQVWLAVRHFAKNHRVHDHAITNVVMMGMGEP 174
Query: 175 LNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQD 233
L N+ +V A+ IM + +S +R+T+ST G+V A+ + ++ + LAVSLHAP +
Sbjct: 175 LLNFENVVNAMDIMLDDFAYGLSKRRVTLSTAGVVPAMYELR-NVSDVALAVSLHAPNDE 233
Query: 234 VRCQIMPAARAFPLEKLMNALKEYQKNSQQK-IFIEYIMLDGVNDEEQHAHQLGKLLETF 292
+R ++P + +PL++LM A KEY K +++ + +EY+ML G+ND ++HA QL +LL
Sbjct: 234 LRNVLVPLNKKYPLKELMTACKEYFKEDKRRYVTMEYVMLAGINDTDEHAQQLIRLLNGI 293
Query: 293 QVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVV 352
+ VNLIPFNP + S ++ S + F++ L + I RK G I ACGQLV
Sbjct: 294 RAKVNLIPFNPFPNTS-YQRSDAPTIDRFRETLMHA-GINAITRKTRGDAIDAACGQLVG 351
Query: 353 NLPDK 357
+ D+
Sbjct: 352 QVKDR 356
>gi|209521129|ref|ZP_03269857.1| radical SAM enzyme, Cfr family [Burkholderia sp. H160]
gi|209498439|gb|EDZ98566.1| radical SAM enzyme, Cfr family [Burkholderia sp. H160]
Length = 383
Score = 197 bits (500), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 132/338 (39%), Positives = 180/338 (53%), Gaps = 43/338 (12%)
Query: 45 EFPSLPSAAYSLLRSKFKP-LTSTLHSVVDS--SDDVTTKLLVKLQNGGFVEAVIMRYDS 101
+F + A SL R K K T T+ VV S D T K L+ + NG VE V +
Sbjct: 45 DFDGMTDLAKSL-REKLKGRATITMPGVVSDHISSDGTRKWLIDVGNGNAVETVYI---- 99
Query: 102 SLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQL------V 155
P R TLC+SSQ GC + C FC+TG GF NL++GEI+ QL +
Sbjct: 100 ----------PEETRGTLCVSSQAGCAVNCRFCSTGKQGFSRNLTTGEIIGQLRMAEFAL 149
Query: 156 HASRLSN--------------IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRI 200
ASR + NVV MGMGEPL NY A+V A+R+M + +S +R+
Sbjct: 150 RASRGDAGGRAMGGDGKGERVVTNVVMMGMGEPLLNYDAVVPAMRLMLDDNAYGLSRRRV 209
Query: 201 TVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKN 260
T+ST G+V +++ +DLP + LAVSLHAP +R +++P + +PL +LM A + Y K
Sbjct: 210 TLSTSGVVPMMDRLGADLP-VALAVSLHAPNDALRDELVPLNKKYPLRELMAACERYLKV 268
Query: 261 SQQK-IFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVS 319
+ + I EY MLDGVND E HA QL + NLIPFNP R S +++
Sbjct: 269 APRDFITFEYCMLDGVNDSEAHARQLLAVTRDVPCKFNLIPFNPFPESGLIR-SKQEQIK 327
Query: 320 SFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDK 357
F ++L + + TTVRK G DI ACGQL + D+
Sbjct: 328 RFAQVLIDA-GVVTTVRKTRGDDIDAACGQLAGAVKDR 364
>gi|358010804|ref|ZP_09142614.1| UPF0063 protein yfgB [Acinetobacter sp. P8-3-8]
Length = 411
Score = 197 bits (500), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 116/302 (38%), Positives = 178/302 (58%), Gaps = 32/302 (10%)
Query: 75 SDDVTTKLLVKLQNG--GFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCN 132
S D T K + ++ +G VE V++ + G R TLCISSQVGC + C+
Sbjct: 101 SKDGTRKWVFRVGDGDGSLVETVLIPAEDKTG----------LRKTLCISSQVGCALDCS 150
Query: 133 FCATGTMGFKSNLSSGEIVEQL-----------VHASRLSNIRNVVFMGMGEPLNNYAAL 181
FC+TG GF+ +L+ EI+ QL A R ++ NVV MGMGEPL NY A+
Sbjct: 151 FCSTGKQGFQRDLTPDEIIGQLWVANYSYMEDVAVAERERSVTNVVMMGMGEPLLNYDAV 210
Query: 182 VEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMP 240
+ ++ IM + +S +R+T+ST G+V I++ D+ + LA+SLHAP ++R +++P
Sbjct: 211 LSSMHIMLDDFAYGMSKRRVTLSTSGVVPKIDQLAKDI-DVALAISLHAPNDELRNELVP 269
Query: 241 AARAFPLEKLMNALKEY-----QKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVV 295
+ +PLE+L+ A + Y ++S++ + IEY+ML+GVND+ +HA Q+ KLL+
Sbjct: 270 INKKYPLEQLIAACQRYIGKDGNESSRKHVTIEYVMLEGVNDQPEHAQQMIKLLKNLPSK 329
Query: 296 VNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLP 355
+NLIPFNP R SS +++ SFQK L + + T+R+ G DI ACGQLV +
Sbjct: 330 INLIPFNPFPHAPYGR-SSRNRIISFQKTLSDAGFV-CTIRQTRGDDIDAACGQLVGQVA 387
Query: 356 DK 357
D+
Sbjct: 388 DR 389
>gi|315925829|ref|ZP_07922036.1| cfr family radical SAM enzyme [Pseudoramibacter alactolyticus ATCC
23263]
gi|315620938|gb|EFV00912.1| cfr family radical SAM enzyme [Pseudoramibacter alactolyticus ATCC
23263]
Length = 384
Score = 197 bits (500), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 118/309 (38%), Positives = 173/309 (55%), Gaps = 21/309 (6%)
Query: 44 DEFPSLPSAAYSLLRSKFKPLTSTLHSVVDSSDDVTTKLLVKLQNGGFVEAVIMRYDSSL 103
D +LP L++++ + V +D T K+L++L +G VE V+M YD
Sbjct: 77 DACTNLPKKLRETLKTRWIIDWGEVLGVQADLEDGTKKMLIRLADGECVETVLMAYDYGY 136
Query: 104 GKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQ--LVHASRLS 161
+LC+SSQVGC MGC FCA+ G NL++GE+ Q LV A+
Sbjct: 137 --------------SLCVSSQVGCAMGCAFCASTKGGLVRNLTAGEMAAQIALVEAAEGV 182
Query: 162 NIRNVVFMGMGEPLNNYAALVEAVRIMTGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 221
I VV MG+GEPL NY L+ ++I+ F + +RITVST GIV I + + +
Sbjct: 183 RISRVVVMGIGEPLANYDNLLRFIQILN-QGFGIGMRRITVSTCGIVPMIERLADEALEI 241
Query: 222 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQH 281
NLA+SLH+P Q VR QIMPAAR +PL++L+ K Y + +++ EY ++ GVND ++
Sbjct: 242 NLAISLHSPDQAVREQIMPAARRYPLDRLLKTCKNYFNKTGRRVTFEYALMAGVNDRDED 301
Query: 282 AHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQ 341
A L L V +NLI NPI + F S + V+ F K L+ + I T+R+++G+
Sbjct: 302 AKALIGLFSGENVHLNLIRLNPI-TDGPFAGSQN--VTGFAKKLK-TGGINCTIRRRIGK 357
Query: 342 DISGACGQL 350
+I ACGQL
Sbjct: 358 NIDAACGQL 366
>gi|306825018|ref|ZP_07458361.1| cfr family radical SAM enzyme [Streptococcus sp. oral taxon 071
str. 73H25AP]
gi|304432845|gb|EFM35818.1| cfr family radical SAM enzyme [Streptococcus sp. oral taxon 071
str. 73H25AP]
Length = 361
Score = 197 bits (500), Expect = 9e-48, Method: Compositional matrix adjust.
Identities = 120/359 (33%), Positives = 192/359 (53%), Gaps = 30/359 (8%)
Query: 20 KAGIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKF--KPLTSTLHSVVDSSDD 77
+ G K+ IW+++ ++E +L + L +F PL +V S D
Sbjct: 19 EQGEKKFRADQIWEWLYRKRVQSFEEMTNLSKGLIAKLNEQFVVNPLK---QRIVQESAD 75
Query: 78 VTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATG 137
T K L +L +G +E V+MR L ++C+++QVGC +GC FCA+G
Sbjct: 76 GTVKYLFELPDGMLIETVLMRQHYGL--------------SVCVTTQVGCNIGCTFCASG 121
Query: 138 TMGFKSNLSSGEIVEQLVHASRLSNIR-------NVVFMGMGEPLNNYAALVEAVR-IMT 189
+ + +L++GEIV Q++ + + R ++V MG+GEP +NY ++ VR I
Sbjct: 122 LIKKQRDLNNGEIVAQIMLVQKYFDERGQDERVSHIVVMGIGEPFDNYNNVLNFVRTIND 181
Query: 190 GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEK 249
+ + ITVST G+ H I F ++ +NLAVSLHAP ++R IM RAFP+EK
Sbjct: 182 DKGMAIGARHITVSTSGLAHKIRDFANEGVQVNLAVSLHAPNNELRSSIMKINRAFPIEK 241
Query: 250 LMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVV--VNLIPFNPIGSV 307
L A++ Y + + +++ EYIML+ VND + A +L +LL+ + + VNLIP+NP+
Sbjct: 242 LFAAIEYYIETTNRRVTFEYIMLNEVNDGVEQALELAELLKNIKKLSYVNLIPYNPVSEH 301
Query: 308 SQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDKISAKSTPPV 366
Q+ S ++V +F L+ + I VR++ G DI ACGQL N + K+ V
Sbjct: 302 DQYSRSPRERVMAFYDTLKKN-GINCVVRQEHGTDIDAACGQLRSNTMKRDRQKAVAAV 359
>gi|296331150|ref|ZP_06873624.1| ribosomal RNA large subunit methyltransferase N [Bacillus subtilis
subsp. spizizenii ATCC 6633]
gi|305674306|ref|YP_003865978.1| Fe-S-cluster AdoMet radical enzyme [Bacillus subtilis subsp.
spizizenii str. W23]
gi|296151794|gb|EFG92669.1| ribosomal RNA large subunit methyltransferase N [Bacillus subtilis
subsp. spizizenii ATCC 6633]
gi|305412550|gb|ADM37669.1| putative Fe-S-cluster AdoMet radical enzyme [Bacillus subtilis
subsp. spizizenii str. W23]
Length = 363
Score = 197 bits (500), Expect = 9e-48, Method: Compositional matrix adjust.
Identities = 112/328 (34%), Positives = 184/328 (56%), Gaps = 27/328 (8%)
Query: 31 IWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHSVVDSSDDVTTKLLVKLQNGG 90
I++++ E ++E +L L + F+ +T+ +V +S D T K L +L +G
Sbjct: 45 IFEWLYEKRVSSFEEMTNLSKDLREKLSAHFE-MTTLKTAVKQTSQDGTMKFLFELHDGY 103
Query: 91 FVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEI 150
+E V+MR++ +++C+++QVGC++GC FCA+ G K NL +GEI
Sbjct: 104 TIETVLMRHEYG--------------NSVCVTTQVGCRIGCTFCASTLGGLKRNLEAGEI 149
Query: 151 VEQLVHASRL-----SNIRNVVFMGMGEPLNNYAALVEAVRIMT---GLPFQVSPKRITV 202
V Q++ + + +VV MG+GEP +N+ ++ ++I+ GL + + ITV
Sbjct: 150 VAQVLKVQKALDETDERVSSVVIMGIGEPFDNFNEMLAFLKIINHDKGL--NIGARHITV 207
Query: 203 STVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQ 262
ST GI+ I +F +N A+SLHAP ++R ++MP RA+ L LM A+K Y +
Sbjct: 208 STSGIIPKIYEFADQQMQINFAISLHAPNTEIRSRLMPINRAYKLPDLMEAVKYYINKTG 267
Query: 263 QKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQ 322
++I EY + GVND+ +HA +L LLE + VNLIP N + RT D++ +F+
Sbjct: 268 RRISFEYGLFGGVNDQVEHAEELADLLEGIKCHVNLIPVNYVPERDYVRTPR-DQIFAFE 326
Query: 323 KILRGSYNIRTTVRKQMGQDISGACGQL 350
K L+ S + T+R++ G DI ACGQL
Sbjct: 327 KTLK-SRGVNVTIRREQGHDIDAACGQL 353
>gi|420219999|ref|ZP_14724989.1| 23S rRNA m2A2503 methyltransferase [Staphylococcus epidermidis
NIH04008]
gi|394287006|gb|EJE30980.1| 23S rRNA m2A2503 methyltransferase [Staphylococcus epidermidis
NIH04008]
Length = 364
Score = 197 bits (500), Expect = 9e-48, Method: Compositional matrix adjust.
Identities = 107/313 (34%), Positives = 172/313 (54%), Gaps = 23/313 (7%)
Query: 44 DEFPSLPSAAYSLLRSKFKPLTSTLHSVVDSSDDVTTKLLVKLQNGGFVEAVIMRYDSSL 103
DE +L +L+ F +T+ V S D T K L +LQ+G +E V+MR++
Sbjct: 59 DEMTNLSKELRQILKDHF-AMTTLTTVVKQESKDGTIKFLFELQDGYTIETVLMRHEYG- 116
Query: 104 GKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRL--- 160
+++C+++QVGC++GC FCA+ G K NL +GEIV Q++ +
Sbjct: 117 -------------NSVCVTTQVGCRIGCTFCASTLGGLKRNLEAGEIVSQVLTVQKALDE 163
Query: 161 --SNIRNVVFMGMGEPLNNYAALVEAVRIMTGL-PFQVSPKRITVSTVGIVHAINKFHSD 217
+ +V MG+GEP NY +++ +RI+ + + ITVST GI+ I F +
Sbjct: 164 TNERVSQIVIMGIGEPFENYDEMMDFLRIVNDDNSLNIGARHITVSTSGIIPRIYDFAEE 223
Query: 218 LPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVND 277
+N AVSLH ++R ++MP RA+ ++KLM A++ YQ+ + +++ EY + GVND
Sbjct: 224 DIQINFAVSLHGAKDEIRSRLMPINRAYNVDKLMEAIRYYQEKTNRRVTFEYGLFGGVND 283
Query: 278 EEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRK 337
+ +HA L L++ VNLIP N + + +T DD + F+K L+ I T+R+
Sbjct: 284 QLEHARDLAHLIKNLNCHVNLIPVNHVPERNYVKTPKDD-IFKFEKELK-RLGINATIRR 341
Query: 338 QMGQDISGACGQL 350
+ G DI ACGQL
Sbjct: 342 EQGSDIDAACGQL 354
>gi|417645977|ref|ZP_12295862.1| 23S rRNA m2A2503 methyltransferase [Staphylococcus epidermidis
VCU144]
gi|417910733|ref|ZP_12554449.1| 23S rRNA m2A2503 methyltransferase [Staphylococcus epidermidis
VCU105]
gi|418622060|ref|ZP_13184816.1| 23S rRNA m2A2503 methyltransferase [Staphylococcus epidermidis
VCU123]
gi|420187577|ref|ZP_14693597.1| 23S rRNA m2A2503 methyltransferase [Staphylococcus epidermidis
NIHLM039]
gi|420206462|ref|ZP_14711972.1| 23S rRNA m2A2503 methyltransferase [Staphylococcus epidermidis
NIHLM008]
gi|329729989|gb|EGG66380.1| 23S rRNA m2A2503 methyltransferase [Staphylococcus epidermidis
VCU144]
gi|341654921|gb|EGS78657.1| 23S rRNA m2A2503 methyltransferase [Staphylococcus epidermidis
VCU105]
gi|374827435|gb|EHR91297.1| 23S rRNA m2A2503 methyltransferase [Staphylococcus epidermidis
VCU123]
gi|394256019|gb|EJE00955.1| 23S rRNA m2A2503 methyltransferase [Staphylococcus epidermidis
NIHLM039]
gi|394278301|gb|EJE22618.1| 23S rRNA m2A2503 methyltransferase [Staphylococcus epidermidis
NIHLM008]
Length = 364
Score = 197 bits (500), Expect = 9e-48, Method: Compositional matrix adjust.
Identities = 107/313 (34%), Positives = 172/313 (54%), Gaps = 23/313 (7%)
Query: 44 DEFPSLPSAAYSLLRSKFKPLTSTLHSVVDSSDDVTTKLLVKLQNGGFVEAVIMRYDSSL 103
DE +L +L+ F +T+ V S D T K L +LQ+G +E V+MR++
Sbjct: 59 DEMTNLSKELRQILKDHF-AMTTLTTVVKQESKDGTIKFLFELQDGYTIETVLMRHEYG- 116
Query: 104 GKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRL--- 160
+++C+++QVGC++GC FCA+ G K NL +GEIV Q++ +
Sbjct: 117 -------------NSVCVTTQVGCRIGCTFCASTLGGLKRNLEAGEIVSQVLTVQKALDE 163
Query: 161 --SNIRNVVFMGMGEPLNNYAALVEAVRIMTGL-PFQVSPKRITVSTVGIVHAINKFHSD 217
+ +V MG+GEP NY +++ +RI+ + + ITVST GI+ I F +
Sbjct: 164 TNERVSQIVIMGIGEPFENYDEMMDFLRIVNDDNSLNIGARHITVSTSGIIPRIYDFAEE 223
Query: 218 LPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVND 277
+N AVSLH ++R ++MP RA+ ++KLM A++ YQ+ + +++ EY + GVND
Sbjct: 224 DIQINFAVSLHGAKDEIRSRLMPINRAYNVDKLMEAIRYYQEKTNRRVTFEYGLFGGVND 283
Query: 278 EEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRK 337
+ +HA L L++ VNLIP N + + +T DD + F+K L+ I T+R+
Sbjct: 284 QLEHARDLAHLIKNLNCHVNLIPVNHVPERNYVKTPKDD-IFKFEKELK-RLGINATIRR 341
Query: 338 QMGQDISGACGQL 350
+ G DI ACGQL
Sbjct: 342 EQGSDIDAACGQL 354
>gi|315221970|ref|ZP_07863881.1| radical SAM enzyme, Cfr family [Streptococcus anginosus F0211]
gi|421491238|ref|ZP_15938604.1| 23S rRNA m2A2503 methyltransferase [Streptococcus anginosus SK1138]
gi|315188936|gb|EFU22640.1| radical SAM enzyme, Cfr family [Streptococcus anginosus F0211]
gi|400371340|gb|EJP24299.1| 23S rRNA m2A2503 methyltransferase [Streptococcus anginosus SK1138]
Length = 367
Score = 197 bits (500), Expect = 9e-48, Method: Compositional matrix adjust.
Identities = 121/358 (33%), Positives = 193/358 (53%), Gaps = 34/358 (9%)
Query: 19 EKAGIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKF--KPLTSTLHSVVDSSD 76
E G K+ IW+++ + E ++ + L +F PL VV S
Sbjct: 25 ESQGEKKFRATQIWEWLYRKRVQSFTEMTNISKGLLAKLEDEFVVNPLK---QRVVQESA 81
Query: 77 DVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCAT 136
D T K L +L +G +E V+MR L ++C+++QVGC +GC FCA+
Sbjct: 82 DGTVKYLFELPDGMLIETVLMRQHYGL--------------SVCVTTQVGCNIGCTFCAS 127
Query: 137 GTMGFKSNLSSGEIVEQLVHASRLSNIR-------NVVFMGMGEPLNNYAALVEAVRIMT 189
G + + +L++GEI+ Q++ + + R ++V MG+GEP +NY +++ VR +
Sbjct: 128 GLIKKQRDLNNGEIMSQIMLVQKYFDERGQGERVSHIVVMGIGEPFDNYDNVLKFVRTVN 187
Query: 190 ---GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFP 246
GL + + ITVST G+ H I F ++ +NLAVSLHAP ++R IM RAFP
Sbjct: 188 DDKGLA--IGARHITVSTSGLAHKIRDFANEGVQVNLAVSLHAPNNELRSSIMKINRAFP 245
Query: 247 LEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVV--VNLIPFNPI 304
+EKL A++ Y + + +++ EYIML+ VND + A +L +LL+ + + VNLIP+NP+
Sbjct: 246 IEKLFAAIEYYIETTNRRVTFEYIMLNEVNDGVEQALELAELLKNIKKLSYVNLIPYNPV 305
Query: 305 GSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDKISAKS 362
Q+ S ++V +F L+ + I VR++ G DI ACGQL N K K+
Sbjct: 306 SEHDQYSRSPKERVMAFYDTLKKN-GINCVVRQEHGTDIDAACGQLRSNTMKKDKEKA 362
>gi|311068096|ref|YP_003973019.1| ribosomal RNA large subunit methyltransferase N [Bacillus
atrophaeus 1942]
gi|419823923|ref|ZP_14347456.1| ribosomal RNA large subunit methyltransferase N [Bacillus
atrophaeus C89]
gi|310868613|gb|ADP32088.1| ribosomal RNA large subunit methyltransferase N [Bacillus
atrophaeus 1942]
gi|388471960|gb|EIM08750.1| ribosomal RNA large subunit methyltransferase N [Bacillus
atrophaeus C89]
Length = 363
Score = 197 bits (500), Expect = 9e-48, Method: Compositional matrix adjust.
Identities = 112/328 (34%), Positives = 186/328 (56%), Gaps = 27/328 (8%)
Query: 31 IWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHSVVDSSDDVTTKLLVKLQNGG 90
I++++ E +++ +L + L S F LT+ +V +S D T K L +L +G
Sbjct: 45 IFEWLYEKRVSSFEDMTNLSKSLREKLSSHF-VLTTLKTAVKQTSQDGTMKFLFELHDGY 103
Query: 91 FVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEI 150
+E V+MR++ +++C+++QVGC++GC FCA+ G K NL +GEI
Sbjct: 104 TIETVLMRHEYG--------------NSVCVTTQVGCRIGCTFCASTLGGLKRNLEAGEI 149
Query: 151 VEQLVHASRL-----SNIRNVVFMGMGEPLNNYAALVEAVRIMT---GLPFQVSPKRITV 202
V Q+V + + +VV MG+GEP +N+ ++ ++I+ GL + + ITV
Sbjct: 150 VAQVVKVQKALDETDERVSSVVIMGIGEPFDNFNEMLAFLKIINHDKGL--NIGARHITV 207
Query: 203 STVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQ 262
ST GI+ I F +N A+SLHAP ++R ++MP +A+ L +LM A+K Y + +
Sbjct: 208 STSGIIPKIYDFADQQMQINFAISLHAPNTEIRSRLMPINKAYKLPELMEAVKYYIEKTG 267
Query: 263 QKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQ 322
++I EY + GVND+ +HA +L LL+ + VNLIP N + RT D++ +F+
Sbjct: 268 RRISFEYGLFGGVNDQVEHAEELAALLKGVKCHVNLIPVNYVPERDYVRTPK-DQIFAFE 326
Query: 323 KILRGSYNIRTTVRKQMGQDISGACGQL 350
K L+ S+ + T+R++ G DI ACGQL
Sbjct: 327 KTLK-SHGVNVTIRREQGHDIDAACGQL 353
>gi|27467811|ref|NP_764448.1| ribosomal RNA large subunit methyltransferase N [Staphylococcus
epidermidis ATCC 12228]
gi|251810648|ref|ZP_04825121.1| Fe-S-cluster redox enzyme [Staphylococcus epidermidis BCM-HMP0060]
gi|282876350|ref|ZP_06285217.1| radical SAM enzyme, Cfr family [Staphylococcus epidermidis SK135]
gi|293366817|ref|ZP_06613493.1| cfr family radical SAM enzyme [Staphylococcus epidermidis
M23864:W2(grey)]
gi|417656608|ref|ZP_12306291.1| 23S rRNA m2A2503 methyltransferase [Staphylococcus epidermidis
VCU028]
gi|417658968|ref|ZP_12308581.1| 23S rRNA m2A2503 methyltransferase [Staphylococcus epidermidis
VCU045]
gi|417909969|ref|ZP_12553702.1| 23S rRNA m2A2503 methyltransferase [Staphylococcus epidermidis
VCU037]
gi|417913375|ref|ZP_12557042.1| 23S rRNA m2A2503 methyltransferase [Staphylococcus epidermidis
VCU109]
gi|418605353|ref|ZP_13168678.1| 23S rRNA m2A2503 methyltransferase [Staphylococcus epidermidis
VCU041]
gi|418606343|ref|ZP_13169624.1| 23S rRNA m2A2503 methyltransferase [Staphylococcus epidermidis
VCU057]
gi|418609856|ref|ZP_13172990.1| 23S rRNA m2A2503 methyltransferase [Staphylococcus epidermidis
VCU065]
gi|418616513|ref|ZP_13179437.1| 23S rRNA m2A2503 methyltransferase [Staphylococcus epidermidis
VCU120]
gi|418624552|ref|ZP_13187227.1| 23S rRNA m2A2503 methyltransferase [Staphylococcus epidermidis
VCU125]
gi|418629010|ref|ZP_13191526.1| 23S rRNA m2A2503 methyltransferase [Staphylococcus epidermidis
VCU127]
gi|418664681|ref|ZP_13226147.1| 23S rRNA m2A2503 methyltransferase [Staphylococcus epidermidis
VCU081]
gi|419768614|ref|ZP_14294730.1| 23S rRNA m2A2503 methyltransferase [Staphylococcus aureus subsp.
aureus IS-250]
gi|419772603|ref|ZP_14298634.1| 23S rRNA m2A2503 methyltransferase [Staphylococcus aureus subsp.
aureus IS-K]
gi|420165245|ref|ZP_14671949.1| 23S rRNA m2A2503 methyltransferase [Staphylococcus epidermidis
NIHLM088]
gi|420169762|ref|ZP_14676340.1| 23S rRNA m2A2503 methyltransferase [Staphylococcus epidermidis
NIHLM070]
gi|420172782|ref|ZP_14679280.1| 23S rRNA m2A2503 methyltransferase [Staphylococcus epidermidis
NIHLM067]
gi|420182888|ref|ZP_14689021.1| 23S rRNA m2A2503 methyltransferase [Staphylococcus epidermidis
NIHLM049]
gi|420194044|ref|ZP_14699873.1| 23S rRNA m2A2503 methyltransferase [Staphylococcus epidermidis
NIHLM021]
gi|420197110|ref|ZP_14702834.1| 23S rRNA m2A2503 methyltransferase [Staphylococcus epidermidis
NIHLM020]
gi|420202068|ref|ZP_14707663.1| 23S rRNA m2A2503 methyltransferase [Staphylococcus epidermidis
NIHLM018]
gi|420209503|ref|ZP_14714940.1| 23S rRNA m2A2503 methyltransferase [Staphylococcus epidermidis
NIHLM003]
gi|420214302|ref|ZP_14719581.1| 23S rRNA m2A2503 methyltransferase [Staphylococcus epidermidis
NIH05005]
gi|420216132|ref|ZP_14721354.1| 23S rRNA m2A2503 methyltransferase [Staphylococcus epidermidis
NIH05001]
gi|420221990|ref|ZP_14726915.1| 23S rRNA m2A2503 methyltransferase [Staphylococcus epidermidis
NIH08001]
gi|420224853|ref|ZP_14729691.1| 23S rRNA m2A2503 methyltransferase [Staphylococcus epidermidis
NIH06004]
gi|420227009|ref|ZP_14731782.1| 23S rRNA m2A2503 methyltransferase [Staphylococcus epidermidis
NIH05003]
gi|420229331|ref|ZP_14734037.1| 23S rRNA m2A2503 methyltransferase [Staphylococcus epidermidis
NIH04003]
gi|420231690|ref|ZP_14736335.1| 23S rRNA m2A2503 methyltransferase [Staphylococcus epidermidis
NIH051668]
gi|420234377|ref|ZP_14738941.1| 23S rRNA m2A2503 methyltransferase [Staphylococcus epidermidis
NIH051475]
gi|421607280|ref|ZP_16048526.1| ribosomal RNA large subunit methyltransferase N [Staphylococcus
epidermidis AU12-03]
gi|81843839|sp|Q8CSW0.1|RLMN_STAES RecName: Full=Probable dual-specificity RNA methyltransferase RlmN;
AltName: Full=23S rRNA
(adenine(2503)-C(2))-methyltransferase; AltName:
Full=23S rRNA m2A2503 methyltransferase; AltName:
Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=tRNA (adenine(37)-C(2))-methyltransferase;
AltName: Full=tRNA m2A37 methyltransferase
gi|27315355|gb|AAO04490.1|AE016746_280 conserved hypothetical protein [Staphylococcus epidermidis ATCC
12228]
gi|251805808|gb|EES58465.1| Fe-S-cluster redox enzyme [Staphylococcus epidermidis BCM-HMP0060]
gi|281295375|gb|EFA87902.1| radical SAM enzyme, Cfr family [Staphylococcus epidermidis SK135]
gi|291319118|gb|EFE59488.1| cfr family radical SAM enzyme [Staphylococcus epidermidis
M23864:W2(grey)]
gi|329736269|gb|EGG72541.1| 23S rRNA m2A2503 methyltransferase [Staphylococcus epidermidis
VCU028]
gi|329736607|gb|EGG72873.1| 23S rRNA m2A2503 methyltransferase [Staphylococcus epidermidis
VCU045]
gi|341652578|gb|EGS76366.1| 23S rRNA m2A2503 methyltransferase [Staphylococcus epidermidis
VCU037]
gi|341655657|gb|EGS79381.1| 23S rRNA m2A2503 methyltransferase [Staphylococcus epidermidis
VCU109]
gi|374402450|gb|EHQ73475.1| 23S rRNA m2A2503 methyltransferase [Staphylococcus epidermidis
VCU041]
gi|374406192|gb|EHQ77095.1| 23S rRNA m2A2503 methyltransferase [Staphylococcus epidermidis
VCU065]
gi|374408296|gb|EHQ79127.1| 23S rRNA m2A2503 methyltransferase [Staphylococcus epidermidis
VCU057]
gi|374410127|gb|EHQ80888.1| 23S rRNA m2A2503 methyltransferase [Staphylococcus epidermidis
VCU081]
gi|374820591|gb|EHR84667.1| 23S rRNA m2A2503 methyltransferase [Staphylococcus epidermidis
VCU120]
gi|374827781|gb|EHR91642.1| 23S rRNA m2A2503 methyltransferase [Staphylococcus epidermidis
VCU125]
gi|374835004|gb|EHR98635.1| 23S rRNA m2A2503 methyltransferase [Staphylococcus epidermidis
VCU127]
gi|383359230|gb|EID36660.1| 23S rRNA m2A2503 methyltransferase [Staphylococcus aureus subsp.
aureus IS-K]
gi|383359440|gb|EID36863.1| 23S rRNA m2A2503 methyltransferase [Staphylococcus aureus subsp.
aureus IS-250]
gi|394236412|gb|EJD81946.1| 23S rRNA m2A2503 methyltransferase [Staphylococcus epidermidis
NIHLM088]
gi|394241459|gb|EJD86873.1| 23S rRNA m2A2503 methyltransferase [Staphylococcus epidermidis
NIHLM067]
gi|394243062|gb|EJD88436.1| 23S rRNA m2A2503 methyltransferase [Staphylococcus epidermidis
NIHLM070]
gi|394249351|gb|EJD94564.1| 23S rRNA m2A2503 methyltransferase [Staphylococcus epidermidis
NIHLM049]
gi|394265917|gb|EJE10563.1| 23S rRNA m2A2503 methyltransferase [Staphylococcus epidermidis
NIHLM020]
gi|394266742|gb|EJE11367.1| 23S rRNA m2A2503 methyltransferase [Staphylococcus epidermidis
NIHLM021]
gi|394270041|gb|EJE14564.1| 23S rRNA m2A2503 methyltransferase [Staphylococcus epidermidis
NIHLM018]
gi|394278950|gb|EJE23262.1| 23S rRNA m2A2503 methyltransferase [Staphylococcus epidermidis
NIHLM003]
gi|394283667|gb|EJE27832.1| 23S rRNA m2A2503 methyltransferase [Staphylococcus epidermidis
NIH05005]
gi|394290021|gb|EJE33891.1| 23S rRNA m2A2503 methyltransferase [Staphylococcus epidermidis
NIH08001]
gi|394292582|gb|EJE36324.1| 23S rRNA m2A2503 methyltransferase [Staphylococcus epidermidis
NIH05001]
gi|394294256|gb|EJE37942.1| 23S rRNA m2A2503 methyltransferase [Staphylococcus epidermidis
NIH06004]
gi|394297510|gb|EJE41107.1| 23S rRNA m2A2503 methyltransferase [Staphylococcus epidermidis
NIH05003]
gi|394299097|gb|EJE42648.1| 23S rRNA m2A2503 methyltransferase [Staphylococcus epidermidis
NIH04003]
gi|394302232|gb|EJE45680.1| 23S rRNA m2A2503 methyltransferase [Staphylococcus epidermidis
NIH051668]
gi|394304339|gb|EJE47745.1| 23S rRNA m2A2503 methyltransferase [Staphylococcus epidermidis
NIH051475]
gi|406657072|gb|EKC83465.1| ribosomal RNA large subunit methyltransferase N [Staphylococcus
epidermidis AU12-03]
Length = 364
Score = 197 bits (500), Expect = 9e-48, Method: Compositional matrix adjust.
Identities = 107/313 (34%), Positives = 172/313 (54%), Gaps = 23/313 (7%)
Query: 44 DEFPSLPSAAYSLLRSKFKPLTSTLHSVVDSSDDVTTKLLVKLQNGGFVEAVIMRYDSSL 103
DE +L +L+ F +T+ V S D T K L +LQ+G +E V+MR++
Sbjct: 59 DEMTNLSKELRQILKDHF-AMTTLTTVVKQESKDGTIKFLFELQDGYTIETVLMRHEYG- 116
Query: 104 GKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRL--- 160
+++C+++QVGC++GC FCA+ G K NL +GEIV Q++ +
Sbjct: 117 -------------NSVCVTTQVGCRIGCTFCASTLGGLKRNLEAGEIVSQVLTVQKALDE 163
Query: 161 --SNIRNVVFMGMGEPLNNYAALVEAVRIMTGL-PFQVSPKRITVSTVGIVHAINKFHSD 217
+ +V MG+GEP NY +++ +RI+ + + ITVST GI+ I F +
Sbjct: 164 TNERVSQIVIMGIGEPFENYDEMMDFLRIVNDDNSLNIGARHITVSTSGIIPRIYDFAEE 223
Query: 218 LPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVND 277
+N AVSLH ++R ++MP RA+ ++KLM A++ YQ+ + +++ EY + GVND
Sbjct: 224 DIQINFAVSLHGAKDEIRSRLMPINRAYNVDKLMEAIRYYQEKTNRRVTFEYGLFGGVND 283
Query: 278 EEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRK 337
+ +HA L L++ VNLIP N + + +T DD + F+K L+ I T+R+
Sbjct: 284 QLEHARDLAHLIKNLNCHVNLIPVNHVPERNYVKTPKDD-IFKFEKELK-RLGINATIRR 341
Query: 338 QMGQDISGACGQL 350
+ G DI ACGQL
Sbjct: 342 EQGSDIDAACGQL 354
>gi|424738861|ref|ZP_18167290.1| ribosomal RNA large subunit methyltransferase N [Lysinibacillus
fusiformis ZB2]
gi|422947345|gb|EKU41742.1| ribosomal RNA large subunit methyltransferase N [Lysinibacillus
fusiformis ZB2]
Length = 380
Score = 197 bits (500), Expect = 9e-48, Method: Compositional matrix adjust.
Identities = 111/315 (35%), Positives = 183/315 (58%), Gaps = 25/315 (7%)
Query: 43 WDEFPSLPSAAYSLLRSKFKPLTSTLHSVV-DSSDDVTTKLLVKLQNGGFVEAVIMRYDS 101
++E +L L + F STL +++ S D T K L +LQ+G +E V+MR++
Sbjct: 74 FEEMSNLSKGLREKLTANFA--LSTLSTIIKQESKDGTIKFLFQLQDGYSIETVLMRHEY 131
Query: 102 SLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRL- 160
+++C+++QVGC++GC FCA+ G K +L +GEIVEQ+V +
Sbjct: 132 G--------------NSVCVTTQVGCRIGCTFCASTLGGLKRHLLAGEIVEQVVKVQQTL 177
Query: 161 ----SNIRNVVFMGMGEPLNNYAALVEAVRIMTGLP-FQVSPKRITVSTVGIVHAINKFH 215
+ ++V MG+GEP +NY A++ ++++ + + ITVST GIV I +F
Sbjct: 178 DELGERVSHIVIMGIGEPFDNYDAMMNFLKVINHEKGLNIGARHITVSTSGIVPKIYQFA 237
Query: 216 SDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGV 275
+ +N AVSLHAP Q+ R ++MP ARA+ LE+LM+A++ Y K + +++ EY ++ G
Sbjct: 238 DEQLQINFAVSLHAPNQEARQKLMPIARAYKLEELMDAVRYYTKKTGRRVSFEYGLMSGE 297
Query: 276 NDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTV 335
ND + A +L L++ + VNLIP N + RTS ++ +F+K L+ + I T+
Sbjct: 298 NDSVEIAEELSALIKGIKCHVNLIPVNYVPERDYVRTSR-SQIFAFEKTLKKN-GINVTI 355
Query: 336 RKQMGQDISGACGQL 350
R++ G DI+ ACGQL
Sbjct: 356 RREQGSDIAAACGQL 370
>gi|350546572|ref|ZP_08915951.1| hypothetical protein GUU_02007 [Mycoplasma iowae 695]
gi|349503870|gb|EGZ31434.1| hypothetical protein GUU_02007 [Mycoplasma iowae 695]
Length = 355
Score = 197 bits (500), Expect = 9e-48, Method: Compositional matrix adjust.
Identities = 110/339 (32%), Positives = 192/339 (56%), Gaps = 30/339 (8%)
Query: 21 AGIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHSVVDSSDDVTT 80
+G K + I+ ++ + ++D+ +L A S L+ + ++++ + D T
Sbjct: 30 SGFKSYVGDQIYDWIYKKDIDDFDKMTNLSKQAISFLKQNYFFDEIKINTIQEDKDG-TV 88
Query: 81 KLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMG 140
K L++L + +E V+M +D ++C++SQVGC MGC FCA+G +
Sbjct: 89 KFLLELHDNNLIEVVLMSFDYGY--------------SVCVTSQVGCNMGCKFCASGLLK 134
Query: 141 FKSNLSSGEIVEQLVHASRL------SNIRNVVFMGMGEPLNNYAALVEAVRIMT---GL 191
N+S+GE ++Q + A + N+ ++V MG+GEP +N+ LV+ ++++ GL
Sbjct: 135 KVRNISTGEFIKQFLLAKQYLYKTKGENLSHMVVMGIGEPFDNFNNLVQFMKVIKEQKGL 194
Query: 192 PFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLM 251
+ ++ITVST G+VH I ++ +NLA+SLHA ++R +IMP AF +EKL+
Sbjct: 195 G--IGGRKITVSTCGLVHRIKEWADLNNQVNLAISLHASNNEIRNKIMPINAAFNIEKLL 252
Query: 252 NALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFR 311
A+ Y + ++I IEYIM+ +ND+++HA++L ++ + V +NLIP+NP+ S R
Sbjct: 253 EAIDYYLNKTNRRITIEYIMIKDLNDKKEHAYELIEMFKNRLVYINLIPYNPVFENSYAR 312
Query: 312 TSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 350
+ +K F IL+ S I T+R++ G I ACGQL
Sbjct: 313 S---EKCKEFYDILKNS-GITCTIRQEKGSSIDAACGQL 347
>gi|379009435|ref|YP_005267248.1| 23S rRNA methyltransferase [Wigglesworthia glossinidia endosymbiont
of Glossina morsitans morsitans (Yale colony)]
gi|375157959|gb|AFA41025.1| 23S rRNA methyltransferase [Wigglesworthia glossinidia endosymbiont
of Glossina morsitans morsitans (Yale colony)]
Length = 363
Score = 197 bits (500), Expect = 9e-48, Method: Compositional matrix adjust.
Identities = 111/251 (44%), Positives = 152/251 (60%), Gaps = 15/251 (5%)
Query: 112 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASR--------LSNI 163
P R+TLCIS Q+GC + C FCAT GF NL S E++ Q+ +A + L I
Sbjct: 97 PEKNRATLCISCQIGCALNCTFCATAMQGFNRNLDSSEMIGQIWNAMKIVHTKNYTLKKI 156
Query: 164 RNVVFMGMGEPLNNYAALVEAVR-IMTGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLN 222
N+VFMGMGEPL N L+ + I+ F +S +RIT+ST GI H I L +
Sbjct: 157 TNIVFMGMGEPLLNLKQLISTINIILDNHGFNLSKRRITISTAGISHIIQNLGKVL-DVK 215
Query: 223 LAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEY---QKNSQQKIFIEYIMLDGVNDEE 279
LA+SLHAP +R QIMP R + + L++A K+Y K +Q KI IEY+ML+ VND +
Sbjct: 216 LAISLHAPNDILRNQIMPINRKYNICSLLSAAKKYISVSKANQGKISIEYVMLNKVNDSD 275
Query: 280 QHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQM 339
HA+QL L+ F VNLIP+N I SQ++ S+ +++ F +IL+ + I TT+RKQ
Sbjct: 276 NHAYQLKNCLKNFPCKVNLIPWNCIPK-SQYKPSNKNQIKKFSQILKKN-GIITTIRKQR 333
Query: 340 GQDISGACGQL 350
G I+ ACGQL
Sbjct: 334 GDSINAACGQL 344
>gi|188995920|ref|YP_001930172.1| ribosomal RNA large subunit methyltransferase N [Porphyromonas
gingivalis ATCC 33277]
gi|259491992|sp|B2RMI0.1|RLMN_PORG3 RecName: Full=Probable dual-specificity RNA methyltransferase RlmN;
AltName: Full=23S rRNA
(adenine(2503)-C(2))-methyltransferase; AltName:
Full=23S rRNA m2A2503 methyltransferase; AltName:
Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=tRNA (adenine(37)-C(2))-methyltransferase;
AltName: Full=tRNA m2A37 methyltransferase
gi|188595600|dbj|BAG34575.1| conserved hypothetical protein [Porphyromonas gingivalis ATCC
33277]
Length = 352
Score = 197 bits (500), Expect = 9e-48, Method: Compositional matrix adjust.
Identities = 111/296 (37%), Positives = 174/296 (58%), Gaps = 21/296 (7%)
Query: 70 SVVDSSDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKM 129
S V S D T K L + G FVE+V++ P G R+TLCISSQVGCKM
Sbjct: 76 SDVQCSVDGTKKYLFPVGEGRFVESVLI--------------PEGDRATLCISSQVGCKM 121
Query: 130 GCNFCATGTMGFKSNLSSGEIVEQLVHASRLSNIRNVVFMGMGEPLNNYAALVEAVRIMT 189
C FC TG G+ NLS+ EI+ Q+ + + N+V+MGMGEPL+N ++ ++ +T
Sbjct: 122 DCLFCMTGKQGWNGNLSAAEILNQIFSVDEAAELTNLVYMGMGEPLDNTDEVLRSIEALT 181
Query: 190 GLPFQV--SPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPL 247
P+ + SPKRITVST+G + +F ++ +LAVSLH+P + R ++MP +AFP+
Sbjct: 182 E-PWGMGWSPKRITVSTIG-AKGLERFLAE-SRCHLAVSLHSPFPEERRKLMPGEKAFPI 238
Query: 248 EKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSV 307
+ ++ ++ Y + Q+++ EYI+ DG+ND+ +HA +L +L +NLI F+ I +V
Sbjct: 239 MQTLDRIRAYDFSGQRRVSFEYIVFDGLNDDMRHADELAAILRGIPCRINLIRFHKIPAV 298
Query: 308 SQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDKISAKST 363
S R+S ++ +F+K + S+ T+R G+DI ACG L + + KS+
Sbjct: 299 S-LRSSDTARMEAFRKRME-SHGYTCTIRASRGEDIFAACGMLSTSKAESSEEKSS 352
>gi|349574484|ref|ZP_08886432.1| cfr family radical SAM enzyme [Neisseria shayeganii 871]
gi|348013953|gb|EGY52849.1| cfr family radical SAM enzyme [Neisseria shayeganii 871]
Length = 363
Score = 197 bits (500), Expect = 9e-48, Method: Compositional matrix adjust.
Identities = 128/364 (35%), Positives = 190/364 (52%), Gaps = 37/364 (10%)
Query: 18 FEKAGIKQHFIPL---------IWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTL 68
++ G+ HF + + +++ ++D+ L + + L+ + + L
Sbjct: 8 YDLQGLTNHFAQMGEKPFRARQVMRWMHLGGAADFDDMTDLAKSLRAKLKDRAEVGVPDL 67
Query: 69 HSVVDSSDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCK 128
+ S D T K L+ + G VE V + P R TLCISSQVGC
Sbjct: 68 MTAQKSRDG-TRKWLLDVGTGNGVETVFI--------------PEAERGTLCISSQVGCA 112
Query: 129 MGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN--------IRNVVFMGMGEPLNNYAA 180
+ C FC+TG GF NLS+ EI+ QL A++ I NVV MGMGEPL NY
Sbjct: 113 LECTFCSTGRQGFNRNLSAAEIIGQLWWANKALGVTPKNERVISNVVMMGMGEPLANYDN 172
Query: 181 LVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIM 239
+V A+ IM + +S +R+TVST G+V +++ D+P + LAVSLHA VR +I+
Sbjct: 173 VVTALSIMLDDHGYGLSRRRVTVSTSGMVPQMDRLKEDMP-VALAVSLHASNDAVRNEIV 231
Query: 240 PAARAFPLEKLMNALKEY-QKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNL 298
P + +PL +LM A + Y K + + EY+MLDGVND +HA +L L+ NL
Sbjct: 232 PLNKKYPLTELMAACRRYLAKAPRDFVTFEYVMLDGVNDRPEHARELLTLVRDVPCKFNL 291
Query: 299 IPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDKI 358
IPFNP S ++ SS++ + F+ IL+ + + TVRK G DI ACGQL + DK
Sbjct: 292 IPFNPFPH-SGYQRSSNENIRIFRDILQQA-GLVVTVRKTRGDDIDAACGQLAGQVRDKT 349
Query: 359 SAKS 362
++
Sbjct: 350 RRQA 353
>gi|308069673|ref|YP_003871278.1| hypothetical protein PPE_02915 [Paenibacillus polymyxa E681]
gi|305858952|gb|ADM70740.1| Conserved hypothetical protein [Paenibacillus polymyxa E681]
Length = 346
Score = 197 bits (500), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 113/325 (34%), Positives = 180/325 (55%), Gaps = 25/325 (7%)
Query: 32 WKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHSVVDSSDDVTTKLLVKLQNGGF 91
W YV + N ++ E +L A L +F +T + + ++S D T K L L +
Sbjct: 33 WLYV-KRVN-DFSEMTNLSKALREKLEEQFSFVTLSEITKLESKDG-TVKFLFGLHDDHA 89
Query: 92 VEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIV 151
+E VIMR++ +++C+++QVGC++GC FCA+ G K NL++GEI
Sbjct: 90 IETVIMRHNYG--------------NSICVTTQVGCRIGCTFCASTLGGLKRNLTAGEIT 135
Query: 152 EQLVHASRL-----SNIRNVVFMGMGEPLNNYAALVEAVRIMTGLP-FQVSPKRITVSTV 205
Q+V A ++ + ++V MG GEP NY A + +R M + + ITVST
Sbjct: 136 AQVVQAQKILDKTNERVSSIVIMGSGEPFENYEATMTFLRTMVHEKGLNIGQRHITVSTS 195
Query: 206 GIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKI 265
GIV I KF + +NLA+S+HAP +R ++MP R +P + +M++L+ Y + ++I
Sbjct: 196 GIVPNIYKFADEDTQINLAISIHAPNDALRSKLMPVNRRYPFKDVMDSLRYYLAKTGRRI 255
Query: 266 FIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKIL 325
EY ++ GVND+ +HA +L +L+ VNLIP N + RTS D + +FQ+IL
Sbjct: 256 SFEYALIGGVNDQAEHAEELADVLKDMLCHVNLIPVNHVPERKYVRTSRSD-IFNFQRIL 314
Query: 326 RGSYNIRTTVRKQMGQDISGACGQL 350
+ T+R++ G DI+ ACGQL
Sbjct: 315 -AEKGVNVTIRREQGHDIAAACGQL 338
>gi|420185477|ref|ZP_14691569.1| 23S rRNA m2A2503 methyltransferase [Staphylococcus epidermidis
NIHLM040]
gi|394254463|gb|EJD99432.1| 23S rRNA m2A2503 methyltransferase [Staphylococcus epidermidis
NIHLM040]
Length = 364
Score = 197 bits (500), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 108/326 (33%), Positives = 178/326 (54%), Gaps = 23/326 (7%)
Query: 31 IWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHSVVDSSDDVTTKLLVKLQNGG 90
I++++ + DE +L +L+ F +T+ V S D T K L +LQ+G
Sbjct: 46 IFEWLYQKRVNSIDEMTNLSKELRQILKDHF-AMTTLTTVVKQESKDGTIKFLFELQDGY 104
Query: 91 FVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEI 150
+E V+MR++ +++C+++QVGC++GC FCA+ G K NL +GEI
Sbjct: 105 TIETVLMRHEYG--------------NSVCVTTQVGCRIGCTFCASTLGGLKRNLEAGEI 150
Query: 151 VEQLVHASRL-----SNIRNVVFMGMGEPLNNYAALVEAVRIMTGL-PFQVSPKRITVST 204
V Q++ + + +V MG+GEP NY +++ +RI+ + + ITVST
Sbjct: 151 VSQVLTVQKALDETNERVSQIVIMGIGEPFENYDEMMDFLRIVNDDNSLNIGARHITVST 210
Query: 205 VGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQK 264
GI+ I F + +N AVSLH ++R ++MP RA+ ++KLM A++ YQ+ + ++
Sbjct: 211 SGIIPRIYDFAEEDIQINFAVSLHGAKDEIRSRLMPINRAYNVDKLMEAIRYYQEKTNRR 270
Query: 265 IFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKI 324
+ EY + GVND+ +HA L L++ VNLIP N + + +T DD + F+K
Sbjct: 271 VTFEYGLFGGVNDQLEHARDLAHLIKNLNCHVNLIPVNHVPERNYVKTPKDD-IFKFEKE 329
Query: 325 LRGSYNIRTTVRKQMGQDISGACGQL 350
L+ I T+R++ G DI ACGQL
Sbjct: 330 LK-RLGINATIRREQGSDIDAACGQL 354
>gi|363895559|ref|ZP_09322554.1| cfr family radical SAM enzyme [Eubacteriaceae bacterium ACC19a]
gi|361957311|gb|EHL10621.1| cfr family radical SAM enzyme [Eubacteriaceae bacterium ACC19a]
Length = 345
Score = 197 bits (500), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 122/349 (34%), Positives = 185/349 (53%), Gaps = 29/349 (8%)
Query: 9 FDGGIIRAEFEKAGIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTL 68
F+ +I FEK KQ + PL++ + +DE ++P L F ++
Sbjct: 13 FEDILISNSFEKYRAKQIY-PLVFDKI-----SSFDEINNIPKKLKEFLNENFCVNPVSI 66
Query: 69 HSVVDSSDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCK 128
+ + S D T K L+KL + +E+V+M+Y L + CISSQVGC
Sbjct: 67 YKKLQSQKDYTKKYLMKLDDDNIIESVLMKYKFGL--------------SACISSQVGCL 112
Query: 129 MGCNFCATGTMGFKSNLSSGEIVEQLVHASR--LSNIRNVVFMGMGEPLNNYAALVEAVR 186
MGC FCA+ +L++GE++ Q+V S+ I N+V MG GEP +NY ++ +
Sbjct: 113 MGCTFCASTVNSKIRDLTAGEMIGQIVSMSKDVSKRISNIVIMGSGEPFDNYNNFIKFLE 172
Query: 187 IM---TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAAR 243
++ GL + + ITVST GI I F +NLA+SLH+P Q+ R IMP +R
Sbjct: 173 LIGDENGL--NIGQRHITVSTCGIADKIRDFADRKMQINLAISLHSPYQEKRENIMPISR 230
Query: 244 AFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNP 303
F +E L+ + Y K + ++I EY ++ VND E+ A L KL+ VN+IP N
Sbjct: 231 KFSIEDLIKSTDYYIKKTNRRITYEYAIIKNVNDSEKDALVLSKLIGHQLCHVNIIPVNT 290
Query: 304 IGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVV 352
S + + +D K+ F KIL ++ I TVR++MG DI+GACGQL +
Sbjct: 291 -SSHNDYEKPNDQKIKKFLKILADNH-INATVRREMGSDINGACGQLRI 337
>gi|443632756|ref|ZP_21116935.1| ribosomal RNA large subunit methyltransferase N [Bacillus subtilis
subsp. inaquosorum KCTC 13429]
gi|443347579|gb|ELS61637.1| ribosomal RNA large subunit methyltransferase N [Bacillus subtilis
subsp. inaquosorum KCTC 13429]
Length = 363
Score = 197 bits (500), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 112/328 (34%), Positives = 184/328 (56%), Gaps = 27/328 (8%)
Query: 31 IWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHSVVDSSDDVTTKLLVKLQNGG 90
I++++ E ++E +L L + F+ +T+ +V +S D T K L +L +G
Sbjct: 45 IFEWLYEKRVSSFEEMTNLSKDLREKLSAHFE-MTTLKTAVKQTSQDGTMKFLFELHDGY 103
Query: 91 FVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEI 150
+E V+MR++ +++C+++QVGC++GC FCA+ G K NL +GEI
Sbjct: 104 TIETVLMRHEYG--------------NSVCVTTQVGCRIGCTFCASTLGGLKRNLEAGEI 149
Query: 151 VEQLVHASRL-----SNIRNVVFMGMGEPLNNYAALVEAVRIMT---GLPFQVSPKRITV 202
V Q++ + + +VV MG+GEP +N+ ++ ++I+ GL + + ITV
Sbjct: 150 VAQVLKVQKALDETDERVSSVVIMGIGEPFDNFNEMLAFLKIINHDKGL--NIGARHITV 207
Query: 203 STVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQ 262
ST GI+ I +F +N A+SLHAP ++R ++MP RA+ L LM A+K Y +
Sbjct: 208 STSGIIPKIYEFADQKMQINFAISLHAPNTEIRSRLMPINRAYKLPDLMEAVKYYINKTG 267
Query: 263 QKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQ 322
++I EY + GVND+ +HA +L LLE + VNLIP N + RT D++ +F+
Sbjct: 268 RRISFEYGLFGGVNDQVEHAEELADLLEGVKCHVNLIPVNYVPERDYVRTPR-DQIFAFE 326
Query: 323 KILRGSYNIRTTVRKQMGQDISGACGQL 350
K L+ S + T+R++ G DI ACGQL
Sbjct: 327 KTLK-SRGVNVTIRREQGHDIDAACGQL 353
>gi|418614010|ref|ZP_13177000.1| 23S rRNA m2A2503 methyltransferase [Staphylococcus epidermidis
VCU118]
gi|374821879|gb|EHR85920.1| 23S rRNA m2A2503 methyltransferase [Staphylococcus epidermidis
VCU118]
Length = 364
Score = 197 bits (500), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 107/313 (34%), Positives = 172/313 (54%), Gaps = 23/313 (7%)
Query: 44 DEFPSLPSAAYSLLRSKFKPLTSTLHSVVDSSDDVTTKLLVKLQNGGFVEAVIMRYDSSL 103
DE +L +L+ F +T+ V S D T K L +LQ+G +E V+MR++
Sbjct: 59 DEMTNLSKELRQILKDHF-AMTTLTTVVKQESKDGTIKFLFELQDGYTIETVLMRHEYG- 116
Query: 104 GKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRL--- 160
+++C+++QVGC++GC FCA+ G K NL +GEIV Q++ +
Sbjct: 117 -------------NSVCVTTQVGCRIGCTFCASTLGGLKRNLEAGEIVSQVLTVQKALDE 163
Query: 161 --SNIRNVVFMGMGEPLNNYAALVEAVRIMTGL-PFQVSPKRITVSTVGIVHAINKFHSD 217
+ +V MG+GEP NY +++ +RI+ + + ITVST GI+ I F +
Sbjct: 164 TNERVSQIVIMGIGEPFENYDEMMDFLRIVNDDNSLNIGARHITVSTSGIIPRIYDFAEE 223
Query: 218 LPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVND 277
+N AVSLH ++R ++MP RA+ ++KLM A++ YQ+ + +++ EY + GVND
Sbjct: 224 DIQINFAVSLHGAKDEIRSRLMPINRAYNVDKLMEAIRYYQEKTNRRVTFEYGLFGGVND 283
Query: 278 EEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRK 337
+ +HA L L++ VNLIP N + + +T DD + F+K L+ I T+R+
Sbjct: 284 QLEHARDLANLIKDLNCHVNLIPVNHVPERNYVKTPKDD-IFKFEKELK-RLGINATIRR 341
Query: 338 QMGQDISGACGQL 350
+ G DI ACGQL
Sbjct: 342 EQGSDIDAACGQL 354
>gi|271963404|ref|YP_003337600.1| radical SAM protein [Streptosporangium roseum DSM 43021]
gi|270506579|gb|ACZ84857.1| radical SAM protein [Streptosporangium roseum DSM 43021]
Length = 374
Score = 197 bits (500), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 125/355 (35%), Positives = 187/355 (52%), Gaps = 37/355 (10%)
Query: 15 RAEFEKAGIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKP--LTSTLHSVV 72
RA + G K + ++ E N + + LP+ A + P LTS
Sbjct: 38 RAVVAELGEKPFRADQLSRHYFEKLNGDPELMTDLPATAREKFAAALFPKLLTSVREMTT 97
Query: 73 DSSDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCN 132
D+ T K L +L +G VE+V+MRY R+T+C+SSQ GC M C
Sbjct: 98 DAG--TTRKTLWRLFDGALVESVLMRYTD--------------RTTMCVSSQAGCGMNCP 141
Query: 133 FCATGTMGFKSNLSSGEIVEQLVHASRL----------SNIRNVVFMGMGEPLNNYAALV 182
FCATG G N+++ EIVEQ+V +R + NVVFMGMGEPL NY A++
Sbjct: 142 FCATGQAGLTRNMTTAEIVEQVVAGARALAAGEVPGGPGRVSNVVFMGMGEPLANYKAVI 201
Query: 183 EAVRIMT-----GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQ 237
AVR M GL +S + +TVSTVG+V AI K ++ + LA+SLHAP ++R
Sbjct: 202 GAVRRMVEPSPDGL--GISARGVTVSTVGLVPAIGKLAAEGLPVTLALSLHAPDDELRDT 259
Query: 238 IMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVN 297
++P + + ++++A Y +++++ IEY ++ +ND+E A LGKL++ V VN
Sbjct: 260 LVPINTRWKVAEVLDAAWNYAATTKRRVSIEYALIKDINDQEWRADLLGKLIKNKLVHVN 319
Query: 298 LIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVV 352
LIP NP S++ S + +F + L + + TVR G++I GACGQL
Sbjct: 320 LIPLNPTPG-SKWTASRPEDERAFVRRLE-FHGVPVTVRDTRGREIDGACGQLAA 372
>gi|386358095|ref|YP_006056341.1| hypothetical protein SCATT_44480 [Streptomyces cattleya NRRL 8057 =
DSM 46488]
gi|365808603|gb|AEW96819.1| hypothetical protein SCATT_44480 [Streptomyces cattleya NRRL 8057 =
DSM 46488]
Length = 368
Score = 197 bits (500), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 124/349 (35%), Positives = 184/349 (52%), Gaps = 37/349 (10%)
Query: 18 FEKAGIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHSVVDSSDD 77
F + QH+ +Y ++P W + +P+AA L P ++ V DD
Sbjct: 42 FRAKQLSQHYFA---RYA-DDP-ATWTD---IPAAARGALAEGLLPELMSVVRHVSCDDD 93
Query: 78 VTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATG 137
T K L +L +G VE+V+MRY R T+CISSQ GC M C FCATG
Sbjct: 94 TTRKTLWRLFDGTLVESVLMRYPD--------------RVTMCISSQAGCGMNCPFCATG 139
Query: 138 TMGFKSNLSSGEIVEQLVHASRL----------SNIRNVVFMGMGEPLNNYAALVEAVRI 187
G NLS+ EIV Q+V R + + N+VFMGMGEPL NY +V A+R
Sbjct: 140 QAGLTRNLSTAEIVHQIVAGMRSLRDGEVPGGPARLSNIVFMGMGEPLANYNRVVAAIRR 199
Query: 188 MTGLP---FQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARA 244
+T +S + ITVSTVG+V A+ +F + LA+SLHAP ++R ++P
Sbjct: 200 LTDPAPDGLGLSQRGITVSTVGLVPAMLRFADEGFKCRLALSLHAPDDELRDTLVPVNTR 259
Query: 245 FPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPI 304
+ + ++++A Y + S +++ IEY ++ +ND A LG+LL+ + VNLIP NP
Sbjct: 260 WKVREVLDAAWHYAEVSGRRVSIEYALIRDINDHAWRADLLGRLLKGRRAHVNLIPLNPT 319
Query: 305 GSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVN 353
S++ SS + +F + L ++ + TVR GQ+I GACGQL +
Sbjct: 320 PG-SKWTASSPEDEKAFVRALE-AHGVPVTVRDTRGQEIDGACGQLAAS 366
>gi|417916651|ref|ZP_12560227.1| 23S rRNA m2A2503 methyltransferase [Streptococcus mitis bv. 2 str.
SK95]
gi|342829349|gb|EGU63706.1| 23S rRNA m2A2503 methyltransferase [Streptococcus mitis bv. 2 str.
SK95]
Length = 346
Score = 197 bits (500), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 118/349 (33%), Positives = 185/349 (53%), Gaps = 30/349 (8%)
Query: 31 IWKYVIENPNCEWDEFPSLPSAAYSLLRSKF--KPLTSTLHSVVDSSDDVTTKLLVKLQN 88
IW+++ ++E +L + L +F PL +V S D T K L +L +
Sbjct: 15 IWEWLYRKRVQSFEEMTNLSKDLIAKLNEQFVVNPLK---QRIVQESADGTVKYLFELPD 71
Query: 89 GGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSG 148
G +E V+MR L ++C+++QVGC +GC FCA+G + + +L++G
Sbjct: 72 GMLIETVLMRQHYGL--------------SVCVTTQVGCNIGCTFCASGLIKKQRDLNNG 117
Query: 149 EIVEQLVHASRL-------SNIRNVVFMGMGEPLNNYAALVEAVR-IMTGLPFQVSPKRI 200
EIV Q++ + I ++V MG+GEP +NY ++ VR I + + I
Sbjct: 118 EIVAQIMLVQKYFDERGQDERISHIVVMGIGEPFDNYNNVLNFVRTINDDKGMAIGARHI 177
Query: 201 TVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKN 260
TVST G+ H I F + +NLAVSLHAP ++R IM RAFP+EKL A++ Y +
Sbjct: 178 TVSTSGLAHKIRDFADEGVQVNLAVSLHAPNNELRSSIMKINRAFPIEKLFAAIEYYIET 237
Query: 261 SQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVV--VNLIPFNPIGSVSQFRTSSDDKV 318
+ +++ EYIML+ VND + A +L +LL+ + + VNLIP+NP+ Q+ S ++V
Sbjct: 238 TNRRVTFEYIMLNEVNDGVEQALELAELLKNIKKLSYVNLIPYNPVSEHDQYSRSPKERV 297
Query: 319 SSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDKISAKSTPPVT 367
+F L+ I VR++ G DI ACGQL N + K+ V
Sbjct: 298 MAFYDTLKKK-GINCVVRQEHGTDIDAACGQLRSNTMKRDRQKAVAAVN 345
>gi|386842816|ref|YP_006247874.1| hypothetical protein SHJG_6734 [Streptomyces hygroscopicus subsp.
jinggangensis 5008]
gi|374103117|gb|AEY92001.1| hypothetical protein SHJG_6734 [Streptomyces hygroscopicus subsp.
jinggangensis 5008]
gi|451796108|gb|AGF66157.1| hypothetical protein SHJGH_6494 [Streptomyces hygroscopicus subsp.
jinggangensis TL01]
Length = 368
Score = 197 bits (500), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 122/357 (34%), Positives = 187/357 (52%), Gaps = 41/357 (11%)
Query: 12 GIIRAEFEKAGIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHSV 71
GI F + QH+ +Y +P +++ +P+ + + L+ P T+
Sbjct: 36 GIGEKPFRAKQLSQHYFA---RYA-HDP----EQWTDIPAGSRAKLQEALFPELMTVVRH 87
Query: 72 VDSSDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGC 131
+ + T K L +L +G VE+V+MRY R T+CISSQ GC M C
Sbjct: 88 LSTDQGTTRKTLWRLFDGTLVESVLMRYPD--------------RVTMCISSQAGCGMNC 133
Query: 132 NFCATGTMGFKSNLSSGEIVEQLVHASRL----------SNIRNVVFMGMGEPLNNYAAL 181
FCATG G NLS+ EIV Q+V R + + N+VFMGMGEPL NY +
Sbjct: 134 PFCATGQAGLDRNLSTAEIVHQIVDGMRALRDGEVPGGPARLSNIVFMGMGEPLANYKRV 193
Query: 182 VEAVRIMT-----GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRC 236
V A+R +T GL +S + ITVSTVG+V AI++F + LA+SLHAP ++R
Sbjct: 194 VGAIRALTDPAPDGL--GLSQRGITVSTVGLVPAIHRFADEGLKCRLAISLHAPDDELRD 251
Query: 237 QIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVV 296
++P + + ++++A EY + S +++ IEY ++ +ND+ +LG+LL+ V V
Sbjct: 252 TLVPVNTRWKVREVLDAGFEYTEKSGRRLSIEYALIRDINDQAWRGDRLGRLLKGKPVHV 311
Query: 297 NLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVN 353
NLIP NP + +D+ + + I ++ + TVR GQ+I GACGQL
Sbjct: 312 NLIPLNPTPGSKWTASRPEDEKAFVEAI--AAHGVPVTVRDTRGQEIDGACGQLAAT 366
>gi|255325234|ref|ZP_05366340.1| radical SAM enzyme, Cfr family [Corynebacterium tuberculostearicum
SK141]
gi|255297799|gb|EET77110.1| radical SAM enzyme, Cfr family [Corynebacterium tuberculostearicum
SK141]
Length = 366
Score = 196 bits (499), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 124/353 (35%), Positives = 186/353 (52%), Gaps = 33/353 (9%)
Query: 22 GIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHSVVDSSDDVTTK 81
G+ + + K+ E+ ++ +P+ ++ F P + D TTK
Sbjct: 33 GLPKFRAKQLAKHYYEHYTDNVEDMTDIPAGKREAVKEAFFPELMQPIRTTSTDDGETTK 92
Query: 82 LLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGF 141
L +L +G +E+V+MRY PG R+TLCISSQ GC M C FCATG G
Sbjct: 93 SLWRLHDGTLLESVLMRY------------PG--RATLCISSQAGCGMACPFCATGQGGL 138
Query: 142 KSNLSSGEIVEQLVH--------ASRLSNIRNVVFMGMGEPLNNYAALVEAVRIMTGLP- 192
NLS+GEIVEQ H RLSN VVFMGMGEPL NY +V+AVR +TG
Sbjct: 139 DRNLSTGEIVEQFRHAAAAMAAEGGRLSN---VVFMGMGEPLANYKRVVQAVRQITGQDG 195
Query: 193 --FQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKL 250
F +S + +TVSTVG+ AI K + LAVSLH P ++R ++P + ++++
Sbjct: 196 AGFGLSQRNVTVSTVGLAPAIRKLADEDLACTLAVSLHTPDDELRDGLVPVNNRWSVDEV 255
Query: 251 MNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLET---FQVVVNLIPFNPIGSV 307
++A + Y S +++ IEY ++ ND++ A LG+ L +V VN+IP NP
Sbjct: 256 LDAARYYADKSARRVSIEYALIRDKNDQDFRADMLGRKLHQKLGSKVHVNVIPLNPTPG- 314
Query: 308 SQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDKISA 360
S++ + D+ F + ++ + + TVR G +I+ ACGQL + + SA
Sbjct: 315 SEWDAAPQDRQDEFVRRVQ-AQGVPCTVRDTKGDEIAAACGQLAADEREDKSA 366
>gi|19746482|ref|NP_607618.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
pyogenes MGAS8232]
gi|81632611|sp|Q8P058.1|RLMN_STRP8 RecName: Full=Probable dual-specificity RNA methyltransferase RlmN;
AltName: Full=23S rRNA
(adenine(2503)-C(2))-methyltransferase; AltName:
Full=23S rRNA m2A2503 methyltransferase; AltName:
Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=tRNA (adenine(37)-C(2))-methyltransferase;
AltName: Full=tRNA m2A37 methyltransferase
gi|19748687|gb|AAL98117.1| conserved hypothetical protein [Streptococcus pyogenes MGAS8232]
Length = 359
Score = 196 bits (499), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 119/343 (34%), Positives = 190/343 (55%), Gaps = 34/343 (9%)
Query: 22 GIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKF--KPLTSTLHSVVDSSDDVT 79
G KQ IW ++ + ++E ++ +L F PL VV S D T
Sbjct: 21 GQKQFRATQIWDWLYKKRVQSFEEMTNISKDFVPILNDSFCVNPLK---QRVVQESADGT 77
Query: 80 TKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTM 139
K L +L +G +E V+MR ++ G ++C+++QVGC +GC FCA+G +
Sbjct: 78 VKYLFELPDGMLIETVLMR------QHYG--------HSVCVTTQVGCNIGCTFCASGLI 123
Query: 140 GFKSNLSSGEIVEQLVHASRLSNIR-------NVVFMGMGEPLNNYAALVEAVRIMT--- 189
+ +L+SGEI Q++ + + R +VV MG+GEP +NY ++ +R++
Sbjct: 124 KKQRDLNSGEITAQIMLVQKYFDDRKQGERVSHVVVMGIGEPFDNYKNVMCFLRVINDDN 183
Query: 190 GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEK 249
GL + + ITVST G+ H I F ++ +NLAVSLHAP D+R IM R+FPLEK
Sbjct: 184 GLA--IGARHITVSTSGLAHKIRDFANEGVQVNLAVSLHAPNNDLRSSIMRVNRSFPLEK 241
Query: 250 LMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVV--VNLIPFNPIGSV 307
L +A++ Y + + +++ EYIML+ VND + A +L L +T + + VNLIP+NP+
Sbjct: 242 LFSAIEYYIEKTNRRVTFEYIMLNEVNDSIKQAQELADLTKTIRKLSYVNLIPYNPVSEH 301
Query: 308 SQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 350
Q+ S ++V +F +L+ + + VR++ G DI ACGQL
Sbjct: 302 DQYSRSPKERVLAFYDVLKKN-GVNCVVRQEHGTDIDAACGQL 343
>gi|371775825|ref|ZP_09482147.1| ribosomal RNA large subunit methyltransferase N [Anaerophaga sp.
HS1]
Length = 345
Score = 196 bits (499), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 118/321 (36%), Positives = 179/321 (55%), Gaps = 23/321 (7%)
Query: 33 KYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHSVVDSSDDVTTKLLVKLQNGGFV 92
+++ + + D+ ++ A L+ K++ + + V +S D T K L G F+
Sbjct: 31 RWIYQKGISDIDQMTNISKKAREALKKKYE-IGRFEPTKVQTSADGTKKYLYPALKGLFI 89
Query: 93 EAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVE 152
EA + P R TLC+SSQVGCKMGC FC TG GF+ L++GEI+
Sbjct: 90 EAAYI--------------PDKDRHTLCVSSQVGCKMGCLFCMTGKQGFQGQLTAGEILN 135
Query: 153 QLVHASRLSNIRNVVFMGMGEPLNNYAALVEAVRIMT---GLPFQVSPKRITVSTVGIVH 209
Q++ + + N+VFMGMGEP++N +++++ I T GL + SP+RITVSTVG+
Sbjct: 136 QVLSLPESNLLTNIVFMGMGEPMDNIDNVLQSLEIFTADWGLGW--SPRRITVSTVGVEP 193
Query: 210 AINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEY 269
A+ +F + +LA+SLH+P + R ++MP +P+E ++N L+EY Q+++ EY
Sbjct: 194 AMRRFIEESEA-HLAISLHSPFNEERRRLMPVEHVYPVESIINTLREYDFGRQRRVSFEY 252
Query: 270 IMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSY 329
IM DGVND +H L KLL + VNLI F+ I S S +K+ F L
Sbjct: 253 IMFDGVNDTSKHIKGLTKLLNGLRCRVNLIRFHAIPG-SPLNGSLPEKMKWFADEL-NKK 310
Query: 330 NIRTTVRKQMGQDISGACGQL 350
+ TT+RK G+DI ACG L
Sbjct: 311 GLITTIRKSRGEDIFAACGLL 331
>gi|418325062|ref|ZP_12936272.1| 23S rRNA m2A2503 methyltransferase [Staphylococcus epidermidis
VCU071]
gi|365228968|gb|EHM70140.1| 23S rRNA m2A2503 methyltransferase [Staphylococcus epidermidis
VCU071]
Length = 364
Score = 196 bits (499), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 108/326 (33%), Positives = 178/326 (54%), Gaps = 23/326 (7%)
Query: 31 IWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHSVVDSSDDVTTKLLVKLQNGG 90
I++++ + DE +L +L+ F +T+ V S D T K L +LQ+G
Sbjct: 46 IFEWLYQKRVNSIDEMTNLSKELRQILKDHF-AMTTLTTVVKQESKDGTIKFLFELQDGY 104
Query: 91 FVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEI 150
+E V+MR++ +++C+++QVGC++GC FCA+ G K NL +GEI
Sbjct: 105 TIETVLMRHEYG--------------NSVCVTTQVGCRIGCTFCASTLGGLKRNLEAGEI 150
Query: 151 VEQLVHASRL-----SNIRNVVFMGMGEPLNNYAALVEAVRIMTGL-PFQVSPKRITVST 204
V Q++ + + +V MG+GEP NY +++ +RI+ + + ITVST
Sbjct: 151 VSQVLTVQKALDETNERVSQIVIMGIGEPFENYDEMMDFLRIVNDDNSLNIGARHITVST 210
Query: 205 VGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQK 264
GI+ I F + +N AVSLH ++R ++MP RA+ ++KLM A++ YQ+ + ++
Sbjct: 211 SGIIPRIYDFAEEDIQINFAVSLHGAKDEIRSRLMPINRAYNVDKLMEAIRYYQEKTNRR 270
Query: 265 IFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKI 324
+ EY + GVND+ +HA L L++ VNLIP N + + +T DD + F+K
Sbjct: 271 VTFEYGLFGGVNDQLEHARDLAHLIKDLNCHVNLIPVNHVPERNYVKTPKDD-IFKFEKE 329
Query: 325 LRGSYNIRTTVRKQMGQDISGACGQL 350
L+ I T+R++ G DI ACGQL
Sbjct: 330 LK-RLGINATIRREQGSDIDAACGQL 354
>gi|332295839|ref|YP_004437762.1| ribosomal RNA large subunit methyltransferase N [Thermodesulfobium
narugense DSM 14796]
gi|332178942|gb|AEE14631.1| Ribosomal RNA large subunit methyltransferase N [Thermodesulfobium
narugense DSM 14796]
Length = 353
Score = 196 bits (499), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 119/358 (33%), Positives = 200/358 (55%), Gaps = 31/358 (8%)
Query: 6 RSVFDGGIIRAE--FEKAGIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKP 63
RS F+ E F G ++ ++ +V +N ++ + +L LL S F
Sbjct: 4 RSFFELSFSELEKFFTDLGFSKYRANQVFSWVYKNNIYDFMQMSNLSLNLRDLLSSSFDL 63
Query: 64 LTSTLHSVVDSSDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISS 123
+ S V+S+D+ + K L+ L F+E V + + + R+T+CISS
Sbjct: 64 SFPKIQSTVESADN-SFKFLLHLGENDFIETVFINHKN--------------RNTICISS 108
Query: 124 QVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHA-----SRLSNIRNVVFMGMGEPLNNY 178
Q+GC +GC C+TG +GFK NL EIV Q++ S++ I N+VFMGMGEP+ N+
Sbjct: 109 QIGCPVGCVMCSTGKIGFKRNLKVSEIVLQVMAVENFVRSKMGKIDNIVFMGMGEPMLNF 168
Query: 179 AALVEAVRIMT---GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVR 235
+++A++I+T G F SP+RI +ST G V I K + LAVSLHA ++R
Sbjct: 169 DNVIKAIKILTDKNGKSF--SPRRIVISTSGFVDGIKKLKEVGLPIKLAVSLHATTDEIR 226
Query: 236 CQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVV 295
+++P + F + +L+ A +EY S++++ EY++++ +ND +Q +L LL+
Sbjct: 227 SKLIPINKTFGISELIKASEEYALASKRRVTYEYVLMESINDSDQDIIRLKDLLKGLHAH 286
Query: 296 VNLIPFNPIGSVSQFRTSSD-DKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVV 352
VNL+ +N S+S R ++ ++ F+K+L ++ I+TT+R G+DI+GACGQL +
Sbjct: 287 VNLVKYNQ--SLSNVRIKTNIRRIKLFEKML-NNFGIKTTIRFSKGEDINGACGQLAL 341
>gi|373469057|ref|ZP_09560274.1| 23S rRNA m2A2503 methyltransferase [Lachnospiraceae bacterium oral
taxon 082 str. F0431]
gi|371765149|gb|EHO53495.1| 23S rRNA m2A2503 methyltransferase [Lachnospiraceae bacterium oral
taxon 082 str. F0431]
Length = 351
Score = 196 bits (499), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 114/311 (36%), Positives = 174/311 (55%), Gaps = 19/311 (6%)
Query: 43 WDEFPSLPSAAYSLLRSKFKPLTSTLHSVVDSSDDVTTKLLVKLQNGGFVEAVIMRYDSS 102
+DE +L L S+ K V S D T K L L +G +E+V M+Y+
Sbjct: 41 FDECTNLSKVFRERLNSEAKLTELKPVEVFKSKIDDTRKYLFALSDGNIIESVRMKYEHG 100
Query: 103 LGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRL-- 160
+++CISSQVGC+MGC FCA+ G NL+ GE+++Q+ RL
Sbjct: 101 --------------NSVCISSQVGCRMGCKFCASTLDGLVRNLTVGEMLDQVYSIQRLLG 146
Query: 161 SNIRNVVFMGMGEPLNNYAALVEAVRIMTG-LPFQVSPKRITVSTVGIVHAINKFHSDLP 219
+ N+V MG GEP++NY +V+ VRI++ + +S + ITVST GIV I + +
Sbjct: 147 ERVSNIVVMGSGEPMDNYENIVKFVRIISSEMGLNISQRNITVSTCGIVPKIRQLADEGL 206
Query: 220 GLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEE 279
+ LA+SLHAP ++R IMP A + L+ +++A Y K + +++ EY ++ GVND
Sbjct: 207 NITLALSLHAPNDEIRKTIMPVANKYALKDVISACDYYFKKTGRRVSYEYSLVAGVNDNI 266
Query: 280 QHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQM 339
+ A +L KL+ + +NLIP NPI F+ S K+ +F++ L + TVR++M
Sbjct: 267 EEAKKLVKLVNGRNIHINLIPVNPIKE-RDFKQSDKLKIKAFREFLEKK-GVNATVRREM 324
Query: 340 GQDISGACGQL 350
G+DI GACGQL
Sbjct: 325 GRDIDGACGQL 335
>gi|410694045|ref|YP_003624667.1| putative radical SAM enzyme, Cfr family, yfgB [Thiomonas sp. 3As]
gi|294340470|emb|CAZ88851.1| putative radical SAM enzyme, Cfr family, yfgB [Thiomonas sp. 3As]
Length = 379
Score = 196 bits (499), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 125/298 (41%), Positives = 164/298 (55%), Gaps = 32/298 (10%)
Query: 75 SDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFC 134
S D T K L + G VEAV + P R+TLC+SSQ GC + C FC
Sbjct: 78 SADGTVKWLFDVGQGNAVEAVFI--------------PEAQRNTLCVSSQAGCAVNCKFC 123
Query: 135 ATGTMGFKSNLSSGEIVEQLVHASRLSN-----------IRNVVFMGMGEPLNNYAALVE 183
+TG GF NL + EI+ QL HA I NVV MGMGEPL NY+ALV
Sbjct: 124 STGHQGFSRNLQTWEILAQLWHAEFTMRRELGLPGGERAISNVVMMGMGEPLQNYSALVP 183
Query: 184 AVRIMTGLP-FQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAA 242
A+R M + +S +R+TVST G+V I++ D P + LAVSLHAPV +R +++P
Sbjct: 184 ALRTMLDDDGYGLSRRRVTVSTSGVVPMIDRLSQDCP-VALAVSLHAPVDALRDELVPLN 242
Query: 243 RAFPLEKLMNALKEYQKNSQQK-IFIEYIMLDGVNDEEQHAHQLGKLLETFQV--VVNLI 299
R +PL +L+ A K Y + + I EY MLDGVND A L +L+ QV NLI
Sbjct: 243 RKYPLHELLAACKRYLDFAPRDFITFEYCMLDGVNDTPALAQDLVRLVRAAQVNCKFNLI 302
Query: 300 PFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDK 357
PFNP S + SS +V++F ++L + + TTVRK G DI ACGQL + D+
Sbjct: 303 PFNPFPQ-SGLKRSSAARVAAFAQVLLDA-GLVTTVRKTRGDDIDAACGQLAGEVQDR 358
>gi|403046859|ref|ZP_10902328.1| ribosomal RNA large subunit methyltransferase N [Staphylococcus sp.
OJ82]
gi|402763555|gb|EJX17648.1| ribosomal RNA large subunit methyltransferase N [Staphylococcus sp.
OJ82]
Length = 364
Score = 196 bits (499), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 109/326 (33%), Positives = 179/326 (54%), Gaps = 23/326 (7%)
Query: 31 IWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHSVVDSSDDVTTKLLVKLQNGG 90
I++++ E DE +L +L+ F +T+ + V S D T K L +LQ+G
Sbjct: 46 IFEWLYEKRVDSIDEMLNLSKELREVLKESF-TMTTMMTVVKQESRDGTIKFLFELQDGY 104
Query: 91 FVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEI 150
+E V+MR++ +++C+++QVGC++GC FCA+ G K NL +GEI
Sbjct: 105 TIETVLMRHEYG--------------NSVCVTTQVGCRIGCTFCASTLGGLKRNLEAGEI 150
Query: 151 VEQLVHASRL-----SNIRNVVFMGMGEPLNNYAALVEAVRIMTGLP-FQVSPKRITVST 204
V Q++ + + +V MG+GEP NY +++ ++I+ + + ITVST
Sbjct: 151 VSQVLTVQKALDESEERVSQIVIMGIGEPFENYDEMMDFLKIVNNDNGLNIGARHITVST 210
Query: 205 VGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQK 264
GI+ I F + +N AVSLH ++R ++MP RA+ +EKLM A+ YQ+ + ++
Sbjct: 211 SGIIPRIYDFADEDIQINFAVSLHGANDEIRSRLMPINRAYNVEKLMEAINYYQETTNRR 270
Query: 265 IFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKI 324
I EY + GVND+ +HA +L L++ VNLIP N + + +T +D + F+K
Sbjct: 271 ITFEYGLFGGVNDQLEHARELAHLIQNLNCHVNLIPVNHVPERNYVKTPKED-IFKFEKE 329
Query: 325 LRGSYNIRTTVRKQMGQDISGACGQL 350
L+ I T+R++ G DI ACGQL
Sbjct: 330 LK-RLGINATIRREQGADIDAACGQL 354
>gi|379795583|ref|YP_005325581.1| ribosomal RNA large subunit methyltransferase N [Staphylococcus
aureus subsp. aureus MSHR1132]
gi|356872573|emb|CCE58912.1| Ribosomal RNA large subunit methyltransferase N [Staphylococcus
aureus subsp. aureus MSHR1132]
Length = 364
Score = 196 bits (499), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 112/326 (34%), Positives = 179/326 (54%), Gaps = 23/326 (7%)
Query: 31 IWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHSVVDSSDDVTTKLLVKLQNGG 90
I++++ + DE +L LL+ F T T +S D T K L +LQ+G
Sbjct: 46 IFEWLYQKRVNSIDEMTNLSKELRQLLKDNFTVTTLTTVVKQESKDG-TIKFLFELQDGY 104
Query: 91 FVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEI 150
+E V+MR+D +++C+++QVGC++GC FCA+ G K NL +GEI
Sbjct: 105 TIETVLMRHDYG--------------NSVCVTTQVGCRIGCTFCASTLGGLKRNLEAGEI 150
Query: 151 VEQLVHASRL-----SNIRNVVFMGMGEPLNNYAALVEAVRIMTGL-PFQVSPKRITVST 204
V Q++ + + +V MG+GEP NY +++ +RI+ + + ITVST
Sbjct: 151 VSQVLTVQKALDATEERVSQIVIMGIGEPFENYDEMMDFLRIVNDDNSLNIGARHITVST 210
Query: 205 VGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQK 264
GI+ I F + +N AVSLHA +VR ++MP RA+ +EKL+ A+K YQ+ + ++
Sbjct: 211 SGIIPRIYDFADEDIQINFAVSLHAAKDEVRSRLMPINRAYNVEKLIEAIKYYQEKTNRR 270
Query: 265 IFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKI 324
+ EY + GVND+ +HA L L++ VNLIP N + + +T+ +D + F+K
Sbjct: 271 VTFEYGLFGGVNDQLEHARDLAHLIKGLNCHVNLIPVNHVPERNYVKTAKND-IFKFEKE 329
Query: 325 LRGSYNIRTTVRKQMGQDISGACGQL 350
L+ I T+R++ G DI ACGQL
Sbjct: 330 LK-RLGINATIRREQGSDIDAACGQL 354
>gi|255292044|dbj|BAH90525.1| conserved hypothetical protein [uncultured bacterium]
gi|255292512|dbj|BAH89627.1| radical SAM enzyme [uncultured bacterium]
gi|255293032|dbj|BAH90127.1| radical SAM enzyme [uncultured bacterium]
Length = 364
Score = 196 bits (499), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 118/288 (40%), Positives = 164/288 (56%), Gaps = 29/288 (10%)
Query: 75 SDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFC 134
+ D T K L +L G +E V + P R TLC+SSQVGC++ C+FC
Sbjct: 78 ASDGTRKWLFQLPGGSAIETVYI--------------PETRRGTLCVSSQVGCQLNCSFC 123
Query: 135 ATGTMGFKSNLSSGEIVEQLVHASRL--------SNIRNVVFMGMGEPLNNYAALVEAVR 186
T GF NL EIV Q+ ASRL I NVVFMGMGEPL N+ +V A+R
Sbjct: 124 QTARQGFNRNLGVDEIVGQIWAASRLLPPHPAREKPITNVVFMGMGEPLLNFDNVVAAIR 183
Query: 187 IM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAF 245
+M L + +S +R+TVST G+V I++ + P + LAVSLHAP +R +++P R +
Sbjct: 184 VMLDDLAYGLSWRRVTVSTSGVVPMIDRLREECP-VALAVSLHAPDDALRAELVPLNRRY 242
Query: 246 PLEKLMNALKEYQKNSQ-QKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPI 304
P++ L++A + Y Q ++I EY +L GVND A L KLL VNLIP+NP+
Sbjct: 243 PIDVLLDACRRYVAGDQRRRITFEYTLLAGVNDHPGQAKALAKLLARVPSKVNLIPYNPV 302
Query: 305 GSVSQFRTSSDDKVSSFQ-KILRGSYNIRTTVRKQMGQDISGACGQLV 351
+ + TS V+ F+ ++LR + + TVRK G DI+GACGQL
Sbjct: 303 AGLP-YATSPPQAVAQFRDELLR--HGLVATVRKTRGDDIAGACGQLA 347
>gi|57866756|ref|YP_188367.1| ribosomal RNA large subunit methyltransferase N [Staphylococcus
epidermidis RP62A]
gi|242242500|ref|ZP_04796945.1| Fe-S-cluster redox enzyme [Staphylococcus epidermidis W23144]
gi|418327709|ref|ZP_12938851.1| 23S rRNA m2A2503 methyltransferase [Staphylococcus epidermidis
14.1.R1.SE]
gi|418612929|ref|ZP_13175950.1| 23S rRNA m2A2503 methyltransferase [Staphylococcus epidermidis
VCU117]
gi|418626834|ref|ZP_13189430.1| 23S rRNA m2A2503 methyltransferase [Staphylococcus epidermidis
VCU126]
gi|418631978|ref|ZP_13194422.1| 23S rRNA m2A2503 methyltransferase [Staphylococcus epidermidis
VCU128]
gi|418634101|ref|ZP_13196499.1| 23S rRNA m2A2503 methyltransferase [Staphylococcus epidermidis
VCU129]
gi|420175014|ref|ZP_14681459.1| 23S rRNA m2A2503 methyltransferase [Staphylococcus epidermidis
NIHLM061]
gi|420177391|ref|ZP_14683727.1| 23S rRNA m2A2503 methyltransferase [Staphylococcus epidermidis
NIHLM057]
gi|420179234|ref|ZP_14685529.1| 23S rRNA m2A2503 methyltransferase [Staphylococcus epidermidis
NIHLM053]
gi|420192760|ref|ZP_14698617.1| 23S rRNA m2A2503 methyltransferase [Staphylococcus epidermidis
NIHLM023]
gi|420204140|ref|ZP_14709700.1| 23S rRNA m2A2503 methyltransferase [Staphylococcus epidermidis
NIHLM015]
gi|81674923|sp|Q5HPX3.1|RLMN_STAEQ RecName: Full=Probable dual-specificity RNA methyltransferase RlmN;
AltName: Full=23S rRNA
(adenine(2503)-C(2))-methyltransferase; AltName:
Full=23S rRNA m2A2503 methyltransferase; AltName:
Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=tRNA (adenine(37)-C(2))-methyltransferase;
AltName: Full=tRNA m2A37 methyltransferase
gi|57637414|gb|AAW54202.1| radical SAM enzyme, Cfr family [Staphylococcus epidermidis RP62A]
gi|242234074|gb|EES36386.1| Fe-S-cluster redox enzyme [Staphylococcus epidermidis W23144]
gi|365232739|gb|EHM73725.1| 23S rRNA m2A2503 methyltransferase [Staphylococcus epidermidis
14.1.R1.SE]
gi|374817239|gb|EHR81424.1| 23S rRNA m2A2503 methyltransferase [Staphylococcus epidermidis
VCU117]
gi|374831378|gb|EHR95120.1| 23S rRNA m2A2503 methyltransferase [Staphylococcus epidermidis
VCU126]
gi|374833647|gb|EHR97322.1| 23S rRNA m2A2503 methyltransferase [Staphylococcus epidermidis
VCU128]
gi|374838093|gb|EHS01650.1| 23S rRNA m2A2503 methyltransferase [Staphylococcus epidermidis
VCU129]
gi|394244300|gb|EJD89645.1| 23S rRNA m2A2503 methyltransferase [Staphylococcus epidermidis
NIHLM061]
gi|394247775|gb|EJD93017.1| 23S rRNA m2A2503 methyltransferase [Staphylococcus epidermidis
NIHLM057]
gi|394254040|gb|EJD99022.1| 23S rRNA m2A2503 methyltransferase [Staphylococcus epidermidis
NIHLM053]
gi|394260576|gb|EJE05385.1| 23S rRNA m2A2503 methyltransferase [Staphylococcus epidermidis
NIHLM023]
gi|394274154|gb|EJE18579.1| 23S rRNA m2A2503 methyltransferase [Staphylococcus epidermidis
NIHLM015]
Length = 364
Score = 196 bits (499), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 107/313 (34%), Positives = 172/313 (54%), Gaps = 23/313 (7%)
Query: 44 DEFPSLPSAAYSLLRSKFKPLTSTLHSVVDSSDDVTTKLLVKLQNGGFVEAVIMRYDSSL 103
DE +L +L+ F +T+ V S D T K L +LQ+G +E V+MR++
Sbjct: 59 DEMTNLSKELRQILKDHF-AMTTLTTVVKQESKDGTIKFLFELQDGYTIETVLMRHEYG- 116
Query: 104 GKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRL--- 160
+++C+++QVGC++GC FCA+ G K NL +GEIV Q++ +
Sbjct: 117 -------------NSVCVTTQVGCRIGCTFCASTLGGLKRNLEAGEIVSQVLTVQKALDE 163
Query: 161 --SNIRNVVFMGMGEPLNNYAALVEAVRIMTGL-PFQVSPKRITVSTVGIVHAINKFHSD 217
+ +V MG+GEP NY +++ +RI+ + + ITVST GI+ I F +
Sbjct: 164 TNERVSQIVIMGIGEPFENYDEMMDFLRIVNDDNSLNIGARHITVSTSGIIPRIYDFAEE 223
Query: 218 LPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVND 277
+N AVSLH ++R ++MP RA+ ++KLM A++ YQ+ + +++ EY + GVND
Sbjct: 224 DIQINFAVSLHGAKDEIRSRLMPINRAYNVDKLMEAIRYYQEKTNRRVTFEYGLFGGVND 283
Query: 278 EEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRK 337
+ +HA L L++ VNLIP N + + +T DD + F+K L+ I T+R+
Sbjct: 284 QLEHARDLAHLIKDLNCHVNLIPVNHVPERNYVKTPKDD-IFKFEKELK-RLGINATIRR 341
Query: 338 QMGQDISGACGQL 350
+ G DI ACGQL
Sbjct: 342 EQGSDIDAACGQL 354
>gi|321315341|ref|YP_004207628.1| ribosomal RNA large subunit methyltransferase N [Bacillus subtilis
BSn5]
gi|430759002|ref|YP_007209723.1| hypothetical protein A7A1_3510 [Bacillus subtilis subsp. subtilis
str. BSP1]
gi|320021615|gb|ADV96601.1| ribosomal RNA large subunit methyltransferase N [Bacillus subtilis
BSn5]
gi|430023522|gb|AGA24128.1| Hypothetical protein YloN [Bacillus subtilis subsp. subtilis str.
BSP1]
Length = 363
Score = 196 bits (499), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 113/328 (34%), Positives = 183/328 (55%), Gaps = 27/328 (8%)
Query: 31 IWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHSVVDSSDDVTTKLLVKLQNGG 90
I++++ E +++ +L L + F LT+ +V +S D T K L +L +G
Sbjct: 45 IFEWLYEKRVSSFEDMTNLSKDLREKLNTHF-VLTTLKTAVKQTSQDGTMKFLFELHDGY 103
Query: 91 FVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEI 150
+E V+MR++ +++C+++QVGC++GC FCA+ G K NL +GEI
Sbjct: 104 TIETVLMRHEYG--------------NSVCVTTQVGCRIGCTFCASTLGGLKRNLEAGEI 149
Query: 151 VEQLVHASRL-----SNIRNVVFMGMGEPLNNYAALVEAVRIMT---GLPFQVSPKRITV 202
V Q+V + + +VV MG+GEP +N+ ++ ++I+ GL + + ITV
Sbjct: 150 VAQVVKVQKALDETDERVSSVVIMGIGEPFDNFNEMLAFLKIINHDKGL--NIGARHITV 207
Query: 203 STVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQ 262
ST GI+ I +F +N A+SLHAP ++R ++MP RA+ L LM A+K Y +
Sbjct: 208 STSGIIPKIYEFADQQMQINFAISLHAPNTEIRSRLMPINRAYKLPDLMEAVKYYINKTG 267
Query: 263 QKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQ 322
++I EY + GVND+ +HA +L LLE + VNLIP N + RT D++ +F+
Sbjct: 268 RRISFEYGLFGGVNDQVEHAEELADLLEGVKCHVNLIPVNYVPERDYVRTPR-DQIFAFE 326
Query: 323 KILRGSYNIRTTVRKQMGQDISGACGQL 350
K L+ S + T+R++ G DI ACGQL
Sbjct: 327 KTLK-SRGVNVTIRREQGHDIDAACGQL 353
>gi|376243105|ref|YP_005133957.1| hypothetical protein CDCE8392_1421 [Corynebacterium diphtheriae
CDCE 8392]
gi|376293505|ref|YP_005165179.1| hypothetical protein CDHC02_1399 [Corynebacterium diphtheriae HC02]
gi|372106347|gb|AEX72409.1| hypothetical protein CDCE8392_1421 [Corynebacterium diphtheriae
CDCE 8392]
gi|372110828|gb|AEX76888.1| hypothetical protein CDHC02_1399 [Corynebacterium diphtheriae HC02]
Length = 368
Score = 196 bits (499), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 126/319 (39%), Positives = 175/319 (54%), Gaps = 35/319 (10%)
Query: 49 LPSAAYSLLRSKFKPLTSTLHSVVDSSDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNG 108
LP+AA ++ P V + D T K L KL +G +E+V+MRY +
Sbjct: 67 LPAAAREKVKDALFPQLMQPVRAVQADDGETQKTLWKLHDGTLLESVLMRYPN------- 119
Query: 109 KPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHAS--------RL 160
R+TLCISSQ GC M C FCATG G NLS+GEIV+Q+ AS RL
Sbjct: 120 -------RATLCISSQAGCGMACPFCATGQGGLDRNLSTGEIVDQVRAASATMQAEGGRL 172
Query: 161 SNIRNVVFMGMGEPLNNYAALVEAVRIMTG-LP--FQVSPKRITVSTVGIVHAINKFHSD 217
SNI VFMGMGEPL NY +V AVR +T +P F +S + +TVSTVG+ AI K +
Sbjct: 173 SNI---VFMGMGEPLANYKRVVSAVRQITAPVPEGFGISQRNVTVSTVGLAPAIRKLADE 229
Query: 218 LPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVND 277
+ LAVSLH P ++R ++P + + ++++A + Y S +++ IEY ++ VND
Sbjct: 230 DLSVTLAVSLHTPDDELRNTLVPTNNRWEVAEVLDAARYYADRSGRRVSIEYALIRDVND 289
Query: 278 EEQHAHQLGKLLETF---QVVVNLIPFNPIGSVSQFRTSSDDKVSSF-QKILRGSYNIRT 333
+ A LGK L V VNLIP NP S++ S D+ F Q+++ + +
Sbjct: 290 QGWRADMLGKKLHKALGPLVHVNLIPLNPTPG-SKWDASPMDRQKEFVQRVI--AQGVTC 346
Query: 334 TVRKQMGQDISGACGQLVV 352
TVR GQ+I+ ACGQL
Sbjct: 347 TVRDTRGQEIAAACGQLAA 365
>gi|296136235|ref|YP_003643477.1| radical SAM enzyme, Cfr family [Thiomonas intermedia K12]
gi|295796357|gb|ADG31147.1| radical SAM enzyme, Cfr family [Thiomonas intermedia K12]
Length = 379
Score = 196 bits (499), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 125/298 (41%), Positives = 164/298 (55%), Gaps = 32/298 (10%)
Query: 75 SDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFC 134
S D T K L + G VEAV + P R+TLC+SSQ GC + C FC
Sbjct: 78 SADGTVKWLFDVGQGNAVEAVFI--------------PEAQRNTLCVSSQAGCAVNCKFC 123
Query: 135 ATGTMGFKSNLSSGEIVEQLVHASRLSN-----------IRNVVFMGMGEPLNNYAALVE 183
+TG GF NL + EI+ QL HA I NVV MGMGEPL NY+ALV
Sbjct: 124 STGHQGFSRNLQTWEILAQLWHAEFTMRRELGLPGGERAISNVVMMGMGEPLQNYSALVP 183
Query: 184 AVRIMTGLP-FQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAA 242
A+R M + +S +R+TVST G+V I++ D P + LAVSLHAPV +R +++P
Sbjct: 184 ALRTMLDDDGYGLSRRRVTVSTSGVVPMIDRLSQDCP-VALAVSLHAPVDALRDELVPLN 242
Query: 243 RAFPLEKLMNALKEYQKNSQQK-IFIEYIMLDGVNDEEQHAHQLGKLLETFQV--VVNLI 299
R +PL +L+ A K Y + + I EY MLDGVND A L +L+ QV NLI
Sbjct: 243 RKYPLHELLAACKRYLDFAPRDFITFEYCMLDGVNDTPALAEDLVRLVRAAQVNCKFNLI 302
Query: 300 PFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDK 357
PFNP S + SS +V++F ++L + + TTVRK G DI ACGQL + D+
Sbjct: 303 PFNPFPQ-SGLKRSSAARVAAFAQVLLDA-GLVTTVRKTRGDDIDAACGQLAGEVQDR 358
>gi|38234081|ref|NP_939848.1| ribosomal RNA large subunit methyltransferase N [Corynebacterium
diphtheriae NCTC 13129]
gi|81564752|sp|Q6NGK9.1|RLMN_CORDI RecName: Full=Probable dual-specificity RNA methyltransferase RlmN;
AltName: Full=23S rRNA
(adenine(2503)-C(2))-methyltransferase; AltName:
Full=23S rRNA m2A2503 methyltransferase; AltName:
Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=tRNA (adenine(37)-C(2))-methyltransferase;
AltName: Full=tRNA m2A37 methyltransferase
gi|38200343|emb|CAE50029.1| Conserved hypothetical protein [Corynebacterium diphtheriae]
Length = 368
Score = 196 bits (499), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 126/319 (39%), Positives = 175/319 (54%), Gaps = 35/319 (10%)
Query: 49 LPSAAYSLLRSKFKPLTSTLHSVVDSSDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNG 108
LP+AA ++ P V + D T K L KL +G +E+V+MRY +
Sbjct: 67 LPAAAREKVKDALFPQLMQPVRAVQADDGETQKTLWKLHDGTLLESVLMRYPN------- 119
Query: 109 KPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHAS--------RL 160
R+TLCISSQ GC M C FCATG G NLS+GEIV+Q+ AS RL
Sbjct: 120 -------RATLCISSQAGCGMACPFCATGQGGLDRNLSTGEIVDQVRAASATMQAEGGRL 172
Query: 161 SNIRNVVFMGMGEPLNNYAALVEAVRIMTG-LP--FQVSPKRITVSTVGIVHAINKFHSD 217
SNI VFMGMGEPL NY +V AVR +T +P F +S + +TVSTVG+ AI K +
Sbjct: 173 SNI---VFMGMGEPLANYKRVVSAVRQITAPVPEGFGISQRNVTVSTVGLAPAIRKLADE 229
Query: 218 LPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVND 277
+ LAVSLH P ++R ++P + + ++++A + Y S +++ IEY ++ VND
Sbjct: 230 DLSVTLAVSLHTPDDELRNTLVPTNNRWEVAEVLDAARYYADRSGRRVSIEYALIRDVND 289
Query: 278 EEQHAHQLGKLLETF---QVVVNLIPFNPIGSVSQFRTSSDDKVSSF-QKILRGSYNIRT 333
+ A LGK L V VNLIP NP S++ S D+ F Q+++ + +
Sbjct: 290 QGWRADMLGKKLHKALGPLVHVNLIPLNPTPG-SKWDASPMDRQKEFVQRVI--AQGVTC 346
Query: 334 TVRKQMGQDISGACGQLVV 352
TVR GQ+I+ ACGQL
Sbjct: 347 TVRDTRGQEIAAACGQLAA 365
>gi|418975392|ref|ZP_13523297.1| 23S rRNA m2A2503 methyltransferase [Streptococcus oralis SK1074]
gi|383347747|gb|EID25721.1| 23S rRNA m2A2503 methyltransferase [Streptococcus oralis SK1074]
Length = 361
Score = 196 bits (499), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 120/359 (33%), Positives = 191/359 (53%), Gaps = 30/359 (8%)
Query: 20 KAGIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKF--KPLTSTLHSVVDSSDD 77
+ G K+ IW+++ ++E +L + L +F PL +V S D
Sbjct: 19 EQGEKKFRADQIWEWLYRKRVQSFEEMTNLSKDLIAKLNEQFVVNPLK---QRIVQESAD 75
Query: 78 VTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATG 137
T K L +L +G +E V+MR L ++C+++QVGC +GC FCA+G
Sbjct: 76 GTVKYLFELPDGMLIETVLMRQHYGL--------------SVCVTTQVGCNIGCTFCASG 121
Query: 138 TMGFKSNLSSGEIVEQLVHASRLSNIR-------NVVFMGMGEPLNNYAALVEAVR-IMT 189
+ + +L++GEIV Q++ + + R ++V MG+GEP +NY ++ VR I
Sbjct: 122 LIKKQRDLNNGEIVAQIMLVQKYFDERGQDERVSHIVVMGIGEPFDNYNNVLNFVRTIND 181
Query: 190 GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEK 249
+ + ITVST G+ H I F ++ +NLAVSLHAP ++R IM RAFP+EK
Sbjct: 182 DKGMAIGARHITVSTSGLAHKIRDFANEGVQVNLAVSLHAPNNELRSSIMKINRAFPIEK 241
Query: 250 LMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVV--VNLIPFNPIGSV 307
L A++ Y + + +++ EYIML+ VND + A +L +LL+ + + VNLIP+NP+
Sbjct: 242 LFAAIEYYIETTNRRVTFEYIMLNEVNDGVEQALELAELLKNIKKLSYVNLIPYNPVSEH 301
Query: 308 SQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDKISAKSTPPV 366
Q+ S ++V +F L+ I VR++ G DI ACGQL N + K+ V
Sbjct: 302 DQYSRSPKERVMAFYDTLKKK-GINCVVRQEHGTDIDAACGQLRSNTMKRDRQKAVAAV 359
>gi|417937398|ref|ZP_12580698.1| 23S rRNA m2A2503 methyltransferase [Streptococcus infantis SK970]
gi|343391662|gb|EGV04235.1| 23S rRNA m2A2503 methyltransferase [Streptococcus infantis SK970]
Length = 361
Score = 196 bits (499), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 119/359 (33%), Positives = 192/359 (53%), Gaps = 30/359 (8%)
Query: 20 KAGIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKF--KPLTSTLHSVVDSSDD 77
+ G K+ IW+++ ++E +L + L +F PL +V S D
Sbjct: 19 EQGEKKFRADQIWEWLYRKRVQTFEEMTNLSKDLIAKLNDQFVVNPLK---QRIVQESAD 75
Query: 78 VTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATG 137
T K L +L +G +E V+MR L ++C+++QVGC +GC FCA+G
Sbjct: 76 GTVKYLFELPDGMLIETVLMRQHYGL--------------SVCVTTQVGCNIGCTFCASG 121
Query: 138 TMGFKSNLSSGEIVEQLVHASRLSNIR-------NVVFMGMGEPLNNYAALVEAVR-IMT 189
+ + +L++GEIV Q++ + + R ++V MG+GEP +NY ++ +R I
Sbjct: 122 LIKKQRDLNNGEIVAQIMLVQKYFDERGQDERVSHIVVMGIGEPFDNYNNVLNFIRTIND 181
Query: 190 GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEK 249
+ + ITVST G+ H I +F ++ +NLAVSLHAP ++R IM RAFP+EK
Sbjct: 182 DKGMAIGARHITVSTSGLAHKIREFANEGVQVNLAVSLHAPNNELRSSIMKINRAFPIEK 241
Query: 250 LMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVV--VNLIPFNPIGSV 307
L A++ Y + + +++ EYIML+ VND + A +L +LL+ + + VNLIP+NP+
Sbjct: 242 LFAAIEYYIETTNRRVTFEYIMLNEVNDGVEQALELAELLKNIKKLSYVNLIPYNPVSEH 301
Query: 308 SQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDKISAKSTPPV 366
Q+ S ++V +F L+ I VR++ G DI ACGQL N + K+ V
Sbjct: 302 DQYSRSPKERVMAFYDTLKKK-GINCVVRQEHGTDIDAACGQLRSNTMKRDRQKAVAEV 359
>gi|409385914|ref|ZP_11238437.1| Ribosomal RNA large subunit methyltransferase N [Lactococcus
raffinolactis 4877]
gi|399206801|emb|CCK19352.1| Ribosomal RNA large subunit methyltransferase N [Lactococcus
raffinolactis 4877]
Length = 383
Score = 196 bits (499), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 120/343 (34%), Positives = 181/343 (52%), Gaps = 34/343 (9%)
Query: 22 GIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKF--KPLTSTLHSVVDSSDDVT 79
G K+ IW ++ + +DE ++ +L+ F PL L V + D T
Sbjct: 30 GAKKFRATQIWDWLYKKRVQSFDEMTNIAKDFIEILKDNFVLNPLKQRL---VQEAKDGT 86
Query: 80 TKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTM 139
K L +L +G VE V+MR L ++C+++QVGC +GC FCA+G +
Sbjct: 87 VKYLFELPDGMLVETVLMRQRYGL--------------SVCVTTQVGCNIGCTFCASGLI 132
Query: 140 GFKSNLSSGEIVEQLVHASRLSNIR-------NVVFMGMGEPLNNYAALVEAVRIMT--- 189
+ +L++GEI Q++ + + R +VV MG+GE +NY ++ ++ +
Sbjct: 133 KKQRDLTAGEITAQIMLVQKYFDERGLEERVSHVVVMGIGETFDNYDNVINFIKTINNDN 192
Query: 190 GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEK 249
GL + + ITVST G+ I +F +NLA+SLHAP DVR IM R FP+EK
Sbjct: 193 GLA--IGARHITVSTSGLAPKIREFAETGLQINLAISLHAPNNDVRTSIMRINRQFPIEK 250
Query: 250 LMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQ--VVVNLIPFNPIGSV 307
L A+ Y + + +++ EYIML GVND +HA +L LL+ + V VNLIP+NP+
Sbjct: 251 LFEAIDYYIEVTNRRVTFEYIMLSGVNDRPEHARELVALLKDKKKLVYVNLIPYNPVSEH 310
Query: 308 SQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 350
Q+ SS D V F IL+ I +R++ G DI ACGQL
Sbjct: 311 DQYSRSSKDDVLKFYDILKKG-GINCVIRQEHGTDIDAACGQL 352
>gi|358464570|ref|ZP_09174534.1| 23S rRNA m2A2503 methyltransferase [Streptococcus sp. oral taxon
058 str. F0407]
gi|357066970|gb|EHI77103.1| 23S rRNA m2A2503 methyltransferase [Streptococcus sp. oral taxon
058 str. F0407]
Length = 349
Score = 196 bits (499), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 120/360 (33%), Positives = 191/360 (53%), Gaps = 30/360 (8%)
Query: 20 KAGIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKF--KPLTSTLHSVVDSSDD 77
+ G K+ IW+++ ++E +L + L +F PL +V S D
Sbjct: 7 EQGEKKFRADQIWEWLYRKRVQSFEEMTNLSKDLIAKLNEQFVVNPLK---QRIVQESAD 63
Query: 78 VTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATG 137
T K L +L +G +E V+MR L ++C+++QVGC +GC FCA+G
Sbjct: 64 GTVKYLFELPDGMLIETVLMRQHYGL--------------SVCVTTQVGCNIGCTFCASG 109
Query: 138 TMGFKSNLSSGEIVEQLVHASRLSNIR-------NVVFMGMGEPLNNYAALVEAVR-IMT 189
+ + +L++GEIV Q++ + + R ++V MG+GEP +NY ++ VR I
Sbjct: 110 LIKKQRDLNNGEIVAQIMLVQKYFDERGQDERVSHIVVMGIGEPFDNYNNVLNFVRTIND 169
Query: 190 GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEK 249
+ + ITVST G+ H I F ++ +NLAVSLHAP ++R IM RAFP+EK
Sbjct: 170 DKGMAIGARHITVSTSGLAHKIRDFANEGVQVNLAVSLHAPNNELRSSIMKINRAFPIEK 229
Query: 250 LMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVV--VNLIPFNPIGSV 307
L A++ Y + + +++ EYIML+ VND + A +L +LL+ + + VNLIP+NP+
Sbjct: 230 LFAAIEYYIETTNRRVTFEYIMLNEVNDGVEQALELAELLKNIKKLSYVNLIPYNPVSEH 289
Query: 308 SQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDKISAKSTPPVT 367
Q+ S ++V +F L+ I VR++ G DI ACGQL N + K+ V
Sbjct: 290 DQYSRSPKERVMAFYDTLKKK-GINCVVRQEHGTDIDAACGQLRSNTMKRDRQKAVAAVN 348
>gi|312796090|ref|YP_004029012.1| radical SAM protein [Burkholderia rhizoxinica HKI 454]
gi|312167865|emb|CBW74868.1| Radical SAM family enzyme [Burkholderia rhizoxinica HKI 454]
Length = 391
Score = 196 bits (499), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 129/330 (39%), Positives = 176/330 (53%), Gaps = 35/330 (10%)
Query: 45 EFPSLPSAAYSLLRSKFKPLTSTLHSVV---DSSDDVTTKLLVKLQNGGFVEAVIMRYDS 101
+F ++ A SL R K K S H V +S D T K L+ + G VE V +
Sbjct: 57 DFDAMTDLAKSL-RDKLKTRASIRHPAVLQDHTSADGTRKWLLDVGEGNAVETVYI---- 111
Query: 102 SLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHAS--- 158
P R TLC+SSQ GC + C FC+TG GF NL GEI+ QL A
Sbjct: 112 ----------PEQGRGTLCVSSQAGCAVNCRFCSTGKQGFSRNLGVGEIIGQLWMAEFAL 161
Query: 159 RLSN---------IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIV 208
R + I NVV MGMGEPL N+ A+V A+R+M + +S +R+T+ST G+V
Sbjct: 162 RAARGGLAPGERVITNVVMMGMGEPLLNFDAVVPAMRLMLDDHAYGLSRRRVTLSTSGVV 221
Query: 209 HAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQK-IFI 267
I++ ++LP + LAVSLHAP +R +++P R +PL +LM A Y + + + I
Sbjct: 222 PMIDRLAAELP-VALAVSLHAPNDALRDELVPLNRKYPLAELMAACNRYLRVAPRDFITF 280
Query: 268 EYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRG 327
EY MLDGVND ++HA QL L NLIPFNP R S +++ F +IL
Sbjct: 281 EYCMLDGVNDRDEHARQLLALTRDVPCKFNLIPFNPFPESGLLR-SHPERIKQFAQILID 339
Query: 328 SYNIRTTVRKQMGQDISGACGQLVVNLPDK 357
+ + TTVR+ G DI ACGQL + D+
Sbjct: 340 A-GVVTTVRRTRGDDIDAACGQLAGEVRDR 368
>gi|430377501|ref|ZP_19431634.1| Cfr family radical SAM protein [Moraxella macacae 0408225]
gi|429540638|gb|ELA08667.1| Cfr family radical SAM protein [Moraxella macacae 0408225]
Length = 402
Score = 196 bits (499), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 117/299 (39%), Positives = 173/299 (57%), Gaps = 28/299 (9%)
Query: 75 SDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFC 134
S+D T K + ++ G VE V++ D + K G R TLCISSQVGC + C+FC
Sbjct: 96 SEDGTRKWVFEVAGGSLVETVLIPADDN--KQFG-------RKTLCISSQVGCALDCSFC 146
Query: 135 ATGTMGFKSNLSSGEIVEQLVHAS-----------RLSNIRNVVFMGMGEPLNNYAALVE 183
+TG GF+ NL+ EI+ QL A+ R + + NVV MGMGEPL NY +V
Sbjct: 147 STGKQGFERNLTESEIIGQLFVANQSYMEGVPAVKRENRVTNVVMMGMGEPLLNYEPVVA 206
Query: 184 AVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAA 242
++ +M F +S +R+T+ST G+V + D+ + LA+SLHAP +R +++P
Sbjct: 207 SMSLMLDDFGFGLSKRRVTLSTSGVVPKMYDLAKDI-DVALAISLHAPNDKLRNELVPIN 265
Query: 243 RAFPLEKLMNALKE--YQKNSQQK--IFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNL 298
+ +PL +L+ A K Y +N + K + IEY+ML VND ++HAHQL LL+ +NL
Sbjct: 266 KKYPLAELIKAAKAYVYDENPRHKKHVTIEYVMLKDVNDSDEHAHQLAVLLQDLPSKINL 325
Query: 299 IPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDK 357
IPFNP + + SS++++ +F IL + T+R+ G DI ACGQLV + DK
Sbjct: 326 IPFNPFAH-APYERSSNNRIHAFSGILNNA-GFVCTIRQTRGDDIDAACGQLVGQVADK 382
>gi|420211891|ref|ZP_14717247.1| 23S rRNA m2A2503 methyltransferase [Staphylococcus epidermidis
NIHLM001]
gi|394280401|gb|EJE24682.1| 23S rRNA m2A2503 methyltransferase [Staphylococcus epidermidis
NIHLM001]
Length = 364
Score = 196 bits (499), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 109/315 (34%), Positives = 174/315 (55%), Gaps = 27/315 (8%)
Query: 44 DEFPSLPSAAYSLLRSKFKPLTSTLHSVVDSSDDVTTKLLVKLQNGGFVEAVIMRYDSSL 103
DE +L +L+ F +T+ V S D T K L +LQ+G +E V+MR++
Sbjct: 59 DEMTNLSKELRQILKDHF-AMTTLTTVVKQESKDGTIKFLFELQDGYTIETVLMRHEYG- 116
Query: 104 GKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRL--- 160
+++C+++QVGC++GC FCA+ G K NL +GEIV Q++ +
Sbjct: 117 -------------NSVCVTTQVGCRIGCTFCASTLGGLKRNLEAGEIVSQVLTVQKALDE 163
Query: 161 --SNIRNVVFMGMGEPLNNYAALVEAVRIMT---GLPFQVSPKRITVSTVGIVHAINKFH 215
+ +V MG+GEP NY +++ +RI+ GL + + ITVST GI+ I F
Sbjct: 164 TNERVSQIVIMGIGEPFENYDEMMDFLRIVNDDNGL--NIGARHITVSTSGIIPRIYDFA 221
Query: 216 SDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGV 275
+ +N AVSLH ++R ++MP RA+ ++KLM A++ YQ+ + +++ EY + GV
Sbjct: 222 EEDIQINFAVSLHGAKDEIRSRLMPINRAYNVDKLMEAIRYYQEKTNRRVTFEYGLFGGV 281
Query: 276 NDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTV 335
ND+ +HA L L++ VNLIP N + + +T DD + F+K L+ I T+
Sbjct: 282 NDQLEHARDLAHLIKNLNCHVNLIPVNHVPERNYVKTPKDD-IFKFEKELK-RLGINATI 339
Query: 336 RKQMGQDISGACGQL 350
R++ G DI ACGQL
Sbjct: 340 RREQGSDIDAACGQL 354
>gi|186476180|ref|YP_001857650.1| radical SAM protein [Burkholderia phymatum STM815]
gi|205829685|sp|B2JIV3.1|RLMN_BURP8 RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|184192639|gb|ACC70604.1| radical SAM enzyme, Cfr family [Burkholderia phymatum STM815]
Length = 382
Score = 196 bits (499), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 132/338 (39%), Positives = 179/338 (52%), Gaps = 43/338 (12%)
Query: 45 EFPSLPSAAYSLLRSKFKPLTS-TLHSVVDS--SDDVTTKLLVKLQNGGFVEAVIMRYDS 101
+F + A SL R K K S T+ VV S D T K LV + NG VE V +
Sbjct: 45 DFDGMTDLAKSL-REKLKGRASITMPPVVSDHISSDGTRKWLVDVGNGNAVETVYI---- 99
Query: 102 SLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHAS--- 158
P R TLC+SSQ GC + C FC+TG GF NL +GEI+ QL A
Sbjct: 100 ----------PEETRGTLCVSSQAGCAVNCRFCSTGKQGFSRNLGTGEIIGQLRMAEFAL 149
Query: 159 RLSN-----------------IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRI 200
R S + NVV MGMGEPL NY A+V A+R+M + +S +R+
Sbjct: 150 RASRGTAGGRATGGDGKGERVVTNVVMMGMGEPLLNYDAVVPAMRLMLDDNAYGLSRRRV 209
Query: 201 TVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKN 260
T+ST G+V +++ +DLP + LAVSLHAP +R +++P + +PL +LM A + Y K
Sbjct: 210 TLSTSGVVPMMDRLGADLP-VALAVSLHAPNDALRDELVPLNKKYPLRELMAACQRYLKV 268
Query: 261 SQQK-IFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVS 319
+ + I EY MLDGVND E HA +L + NLIPFNP R+ S +++
Sbjct: 269 APRDFITFEYCMLDGVNDSEAHARELLAVTRDVPCKFNLIPFNPFPESGLLRSKS-EQIK 327
Query: 320 SFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDK 357
F ++L + + TTVRK G DI ACGQL + D+
Sbjct: 328 RFAQVLMDA-GVVTTVRKTRGDDIDAACGQLAGAVKDR 364
>gi|225870018|ref|YP_002745965.1| ribosomal RNA large subunit methyltransferase N [Streptococcus equi
subsp. equi 4047]
gi|254807212|sp|C0MBZ4.1|RLMN_STRE4 RecName: Full=Probable dual-specificity RNA methyltransferase RlmN;
AltName: Full=23S rRNA
(adenine(2503)-C(2))-methyltransferase; AltName:
Full=23S rRNA m2A2503 methyltransferase; AltName:
Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=tRNA (adenine(37)-C(2))-methyltransferase;
AltName: Full=tRNA m2A37 methyltransferase
gi|225699422|emb|CAW92902.1| radical SAM superfamily protein [Streptococcus equi subsp. equi
4047]
Length = 360
Score = 196 bits (499), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 118/351 (33%), Positives = 192/351 (54%), Gaps = 34/351 (9%)
Query: 31 IWKYVIENPNCEWDEFPSLPSAAYSLLRSKF--KPLTSTLHSVVDSSDDVTTKLLVKLQN 88
IW ++ +DE ++ ++L+ F PL V S D T K L +L +
Sbjct: 30 IWDWLYRKRVQSFDEMTNISKEFVAILKDSFCINPLK---QRVAQESADGTVKYLFELPD 86
Query: 89 GGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSG 148
G +E V+MR ++ G+ ++C+++QVGC +GC FCA+G + + +L+SG
Sbjct: 87 GMLIETVLMR------QHYGQ--------SVCVTTQVGCNIGCTFCASGLIKKQRDLNSG 132
Query: 149 EIVEQLVHASRLSNIR-------NVVFMGMGEPLNNYAALVEAVRIMT---GLPFQVSPK 198
EI Q++ + R +VV MG+GEP +NY ++ +R + GL + +
Sbjct: 133 EITAQIMMVQNYFDKRAQDERVSHVVVMGIGEPFDNYQNVMTFLRTINDDHGLA--IGAR 190
Query: 199 RITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQ 258
ITVST G+ H I +F ++ +NLAVSLHAP ++R IM R+FPL+KL +A++ Y
Sbjct: 191 HITVSTSGLAHKIREFANEGVQVNLAVSLHAPNNELRSSIMRINRSFPLDKLFSAIEYYI 250
Query: 259 KNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVV--VNLIPFNPIGSVSQFRTSSDD 316
+ + +++ EYIML+ VND + A +L L + + + VNLIP+NP+ Q+ S +
Sbjct: 251 ETTNRRVTFEYIMLNKVNDGVEQAQELADLTKRIRKLSYVNLIPYNPVSEHDQYSRSPKE 310
Query: 317 KVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDKISAKSTPPVT 367
+V++F IL+ + + VR++ G DI ACGQL N K K+ T
Sbjct: 311 RVAAFYDILKKN-GVNCVVRQEHGTDIDAACGQLRSNTMKKDRQKAAAART 360
>gi|118475734|ref|YP_892923.1| ribosomal RNA large subunit methyltransferase N [Campylobacter
fetus subsp. fetus 82-40]
gi|261886280|ref|ZP_06010319.1| ribosomal RNA large subunit methyltransferase N [Campylobacter
fetus subsp. venerealis str. Azul-94]
gi|424819924|ref|ZP_18244962.1| Radical SAM protein [Campylobacter fetus subsp. venerealis NCTC
10354]
gi|205829691|sp|A0RRU0.1|RLMN_CAMFF RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|118414960|gb|ABK83380.1| radical SAM enzyme, Cfr family [Campylobacter fetus subsp. fetus
82-40]
gi|342326703|gb|EGU23187.1| Radical SAM protein [Campylobacter fetus subsp. venerealis NCTC
10354]
Length = 354
Score = 196 bits (499), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 121/330 (36%), Positives = 188/330 (56%), Gaps = 18/330 (5%)
Query: 31 IWKYVIENPNCEWDEFPSLPSAAYSLLRSKF--KPLTSTLHSVVDSSDDVTTKLLVKLQN 88
I+++V + +DE ++ L+S+F PLT ++S D + K L KL +
Sbjct: 25 IYEWVYKKNARSFDEMTNISKDVRENLKSEFYLDPLTCVRS---ETSKDGSIKYLFKLTD 81
Query: 89 GGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSG 148
G +E+V++ + +G R T+C+SSQVGCKMGC+FC T GF NLS+G
Sbjct: 82 GKTIESVLLPMKEEISSEDGSVERHA-RYTICVSSQVGCKMGCSFCLTAKGGFVRNLSAG 140
Query: 149 EIVEQLVHASRLSNI-----RNVVFMGMGEPLNNYAALVEAVRIMT---GLPFQVSPKRI 200
EIV Q++ R +NI NVV+MGMGEPL+N + +AV I+ GL + +R
Sbjct: 141 EIVAQILWIKRENNIPYERRVNVVYMGMGEPLDNLTNVSKAVSILKDNDGLA--IGARRQ 198
Query: 201 TVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKN 260
T+ST G+ I K G+ LA+SLHA ++R ++MP +A+ + +M+A++ + +
Sbjct: 199 TISTSGLASQIKKLGELDLGVLLAISLHAVTDELRAKLMPINKAYNIAAVMDAVRAFPID 258
Query: 261 SQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSS 320
++++ EY+++D VND A L KLL + VNLI FNP SQ++ S + V +
Sbjct: 259 MRKRVMFEYLIMDKVNDNLSDAKALVKLLHGIKAKVNLILFNP-HEGSQYQRPSIENVDN 317
Query: 321 FQKILRGSYNIRTTVRKQMGQDISGACGQL 350
F+ L+ S + T+R+ G DIS ACGQL
Sbjct: 318 FRTYLQ-SRGVTCTIRQSKGLDISAACGQL 346
>gi|414563525|ref|YP_006042486.1| 23S rRNA methyltransferase and flSese_enicol/chloramphenicol
resistance protein [Streptococcus equi subsp.
zooepidemicus ATCC 35246]
gi|338846590|gb|AEJ24802.1| 23S rRNA methyltransferase and flSese_enicol/chloramphenicol
resistance protein [Streptococcus equi subsp.
zooepidemicus ATCC 35246]
Length = 360
Score = 196 bits (499), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 118/351 (33%), Positives = 192/351 (54%), Gaps = 34/351 (9%)
Query: 31 IWKYVIENPNCEWDEFPSLPSAAYSLLRSKF--KPLTSTLHSVVDSSDDVTTKLLVKLQN 88
IW ++ +DE ++ ++L+ F PL V S D T K L +L +
Sbjct: 30 IWDWLYRKRVQSFDEMTNISKEFLAILKDSFCINPLK---QRVAQESADGTVKYLFELPD 86
Query: 89 GGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSG 148
G +E V+MR ++ G+ ++C+++QVGC +GC FCA+G + + +L+SG
Sbjct: 87 GMLIETVLMR------QHYGQ--------SVCVTTQVGCNIGCTFCASGLIKKQRDLNSG 132
Query: 149 EIVEQLVHASRLSNIR-------NVVFMGMGEPLNNYAALVEAVRIMT---GLPFQVSPK 198
EI Q++ + R +VV MG+GEP +NY ++ +R + GL + +
Sbjct: 133 EITAQIMMVQNYFDQRGQDERVSHVVVMGIGEPFDNYQNVMTFLRTINDDHGLA--IGAR 190
Query: 199 RITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQ 258
ITVST G+ H I +F ++ +NLAVSLHAP ++R IM R+FPL+KL +A++ Y
Sbjct: 191 HITVSTSGLAHKIREFANEGVQVNLAVSLHAPNNELRSSIMRINRSFPLDKLFSAIEYYI 250
Query: 259 KNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVV--VNLIPFNPIGSVSQFRTSSDD 316
+ + +++ EYIML+ VND + A +L L + + + VNLIP+NP+ Q+ S +
Sbjct: 251 ETTNRRVTFEYIMLNKVNDGVEQAQELADLTKRIRKLSYVNLIPYNPVSEHDQYSRSPKE 310
Query: 317 KVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDKISAKSTPPVT 367
+V++F IL+ + + VR++ G DI ACGQL N K K+ T
Sbjct: 311 RVAAFYDILKKN-GVNCVVRQEHGTDIDAACGQLRSNTIKKDRQKAAAART 360
>gi|227112689|ref|ZP_03826345.1| hypothetical protein PcarbP_06994 [Pectobacterium carotovorum
subsp. brasiliensis PBR1692]
Length = 418
Score = 196 bits (499), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 107/259 (41%), Positives = 153/259 (59%), Gaps = 16/259 (6%)
Query: 112 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN--------- 162
P R+TLC+SSQVGC + C FC+T GF NL EI+ Q+ A+++
Sbjct: 144 PEEDRATLCVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIGAFKVTGQRP 203
Query: 163 IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 221
I NVV MGMGEPL N +V A+ IM F +S +R+T+ST G+V A++K D+ +
Sbjct: 204 ITNVVMMGMGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDV 262
Query: 222 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDE 278
LA+SLHAP D+R +IMP + + +E ++A++ Y + S Q ++ +EY+MLD +ND
Sbjct: 263 ALAISLHAPTDDIRNEIMPINKKYNIETFLSAVRRYLEKSNANQGRVTVEYVMLDHINDG 322
Query: 279 EQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQ 338
+HAHQL + L+ +NLIP+NP R SS+ +V F K+L Y T VRK
Sbjct: 323 TEHAHQLAECLKNTPCKINLIPWNPFPGAPYGR-SSNSRVDRFSKVLM-EYGFTTIVRKT 380
Query: 339 MGQDISGACGQLVVNLPDK 357
G DI ACGQL + D+
Sbjct: 381 RGDDIDAACGQLAGEVVDR 399
>gi|291436989|ref|ZP_06576379.1| conserved hypothetical protein [Streptomyces ghanaensis ATCC 14672]
gi|291339884|gb|EFE66840.1| conserved hypothetical protein [Streptomyces ghanaensis ATCC 14672]
Length = 368
Score = 196 bits (499), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 117/325 (36%), Positives = 177/325 (54%), Gaps = 33/325 (10%)
Query: 44 DEFPSLPSAAYSLLRSKFKPLTSTLHSVVDSSDDVTTKLLVKLQNGGFVEAVIMRYDSSL 103
+++ +P+ + + LR P T+ + + T K L KL +G VE+V+MRY
Sbjct: 60 EQWTDIPAGSRARLREALLPELMTVVRHLSTDQGTTRKTLWKLFDGTLVESVLMRYPD-- 117
Query: 104 GKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRL--- 160
R T+CISSQ GC M C FCATG G NLS+ EIV Q+V R
Sbjct: 118 ------------RVTMCISSQAGCGMNCPFCATGQAGLDRNLSTAEIVHQIVDGMRALRD 165
Query: 161 -------SNIRNVVFMGMGEPLNNYAALVEAVRIMT-----GLPFQVSPKRITVSTVGIV 208
+ + N+VFMGMGEPL NY +V A+R +T GL +S + ITVSTVG+V
Sbjct: 166 GEVPGGPTRLSNIVFMGMGEPLANYNRVVGAIRRLTDPEPDGL--GLSQRGITVSTVGLV 223
Query: 209 HAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIE 268
AI++F + LA+SLHAP ++R ++P + + ++++A Y S +++ IE
Sbjct: 224 PAIHRFSDEGFKCRLAISLHAPDDELRDTLVPVNTRWKVREVLDAGFAYAARSGRRLSIE 283
Query: 269 YIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGS 328
Y ++ +ND+ +LG+LL+ V VNLIP NP SQ+ S + +F + + +
Sbjct: 284 YALIRDINDQAWRGDRLGRLLKGRPVHVNLIPLNPTPG-SQWTASRPEDEKAFVEAI-AA 341
Query: 329 YNIRTTVRKQMGQDISGACGQLVVN 353
+ + T+R GQ+I GACGQL +
Sbjct: 342 HGVPVTIRDTRGQEIDGACGQLAAS 366
>gi|385259938|ref|ZP_10038094.1| 23S rRNA m2A2503 methyltransferase [Streptococcus sp. SK140]
gi|385192975|gb|EIF40364.1| 23S rRNA m2A2503 methyltransferase [Streptococcus sp. SK140]
Length = 361
Score = 196 bits (499), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 119/359 (33%), Positives = 192/359 (53%), Gaps = 30/359 (8%)
Query: 20 KAGIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKF--KPLTSTLHSVVDSSDD 77
+ G K+ IW+++ ++E +L + L +F PL +V S D
Sbjct: 19 EQGEKKFRADQIWEWLYRKRVQTFEEMTNLSKDLIAKLNDQFVVNPLK---QRIVQESAD 75
Query: 78 VTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATG 137
T K L +L +G +E V+MR L ++C+++QVGC +GC FCA+G
Sbjct: 76 GTVKYLFELPDGMLIETVLMRQHYGL--------------SVCVTTQVGCNIGCTFCASG 121
Query: 138 TMGFKSNLSSGEIVEQLVHASRLSNIR-------NVVFMGMGEPLNNYAALVEAVR-IMT 189
+ + +L++GEIV Q++ + + R ++V MG+GEP +NY ++ +R I
Sbjct: 122 LIKKQRDLNNGEIVAQIMLVQKYFDERGQDERVSHIVVMGIGEPFDNYNNVLNFIRTIND 181
Query: 190 GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEK 249
+ + ITVST G+ H I +F ++ +NLAVSLHAP ++R IM RAFP+EK
Sbjct: 182 DKGMAIGARHITVSTSGLAHKIREFANEGVQVNLAVSLHAPNNELRSSIMKINRAFPIEK 241
Query: 250 LMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVV--VNLIPFNPIGSV 307
L A++ Y + + +++ EYIML+ VND + A +L +LL+ + + VNLIP+NP+
Sbjct: 242 LFAAIEYYIETTNRRVTFEYIMLNEVNDGVEQALELAELLKNIKKLSYVNLIPYNPVSEH 301
Query: 308 SQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDKISAKSTPPV 366
Q+ S ++V +F L+ I VR++ G DI ACGQL N + K+ V
Sbjct: 302 DQYSRSPKERVMAFYDTLKKK-GINCVVRQEHGTDIDAACGQLRSNTMKRDRQKAVAEV 359
>gi|390453287|ref|ZP_10238815.1| ribosomal RNA large subunit methyltransferase N [Paenibacillus
peoriae KCTC 3763]
Length = 366
Score = 196 bits (499), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 115/326 (35%), Positives = 177/326 (54%), Gaps = 27/326 (8%)
Query: 32 WKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHSVVD-SSDDVTTKLLVKLQNGG 90
W YV + N ++ E +L L +F +T LH + S D T K L L +
Sbjct: 53 WLYV-KRVN-DFSEMTNLSKGLREKLAEQFSFVT--LHEITKLESKDGTVKFLFGLHDDH 108
Query: 91 FVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEI 150
+E VIMR++ +++C+++QVGC++GC FCA+ G K NL++GEI
Sbjct: 109 AIETVIMRHNYG--------------NSICVTTQVGCRIGCTFCASTLGGLKRNLTAGEI 154
Query: 151 VEQLVHASRL-----SNIRNVVFMGMGEPLNNYAALVEAVRIMTGLP-FQVSPKRITVST 204
Q+V A ++ + ++V MG GEP NY A + +R M + + ITVST
Sbjct: 155 TAQVVQAQKILDKTNERVSSIVIMGSGEPFENYEATMTFLRTMIHEKGLNIGQRHITVST 214
Query: 205 VGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQK 264
GIV I KF + +NLA+S+HAP +R ++MP R +P +M++L+ Y + ++
Sbjct: 215 SGIVPNIYKFADEDTQINLAISIHAPNDALRSKLMPVNRRYPFNDVMDSLRYYLAKTGRR 274
Query: 265 IFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKI 324
I EY ++ GVND+ +HA +L +L+ VNLIP N + RTS D + +FQ+I
Sbjct: 275 ISFEYALIGGVNDQAEHAEELADVLKDMLCHVNLIPVNHVPERKYVRTSRSD-IFNFQRI 333
Query: 325 LRGSYNIRTTVRKQMGQDISGACGQL 350
L I T+R++ G DI+ ACGQL
Sbjct: 334 L-ADKGINVTIRREQGHDIAAACGQL 358
>gi|222529035|ref|YP_002572917.1| ribosomal RNA large subunit methyltransferase N
[Caldicellulosiruptor bescii DSM 6725]
gi|222455882|gb|ACM60144.1| radical SAM enzyme, Cfr family [Caldicellulosiruptor bescii DSM
6725]
Length = 341
Score = 196 bits (499), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 119/341 (34%), Positives = 191/341 (56%), Gaps = 23/341 (6%)
Query: 14 IRAEFEKAGIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHSVVD 73
++ E G K I++++ + + +F +LP + +F L ++L +
Sbjct: 13 LKKWLENIGEKPFRTSQIFEWLYKKNATDVMQFTNLPLELREKIEDEF--LINSLQILKH 70
Query: 74 SSDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNF 133
SD + K L +L + VE+V + Y R G + +C+S+QVGCKM C F
Sbjct: 71 QSDGESIKFLFELCDKNGVESVFLPY-----------RYG---NAICVSTQVGCKMNCRF 116
Query: 134 CATGTMGFKSNLSSGEIVEQLVHASRLS--NIRNVVFMGMGEPLNNYAALVEAVRIMTGL 191
CA+ GF NLS+GE+V+Q+++ + I NVV MG GEP +N + + + I+
Sbjct: 117 CASAIGGFVRNLSAGEMVDQIINVENFTGKRITNVVLMGSGEPFDNIENVFKFIEIINSK 176
Query: 192 PFQ-VSPKRITVSTVGIVHAINKFHSDLPG-LNLAVSLHAPVQDVRCQIMPAARAFPLEK 249
+ + + IT+STVGIV I + D P +NLA+SLHAP +R +++P + +P+E
Sbjct: 177 EGKNIGARHITISTVGIVEGIYRL-CDFPKQVNLAISLHAPNNSLRDKLVPINKKYPVED 235
Query: 250 LMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQ 309
+M A+ Y K + +++ EY ++DGVND + A +LGK+L+ V VNLIP NP+
Sbjct: 236 IMKAVDYYIKRTNRRVTFEYALIDGVNDSIECAQELGKMLKGKLVHVNLIPVNPVEE-KG 294
Query: 310 FRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 350
FR S +K+ F + L+ SY I T+R+++G IS ACGQL
Sbjct: 295 FRRPSKEKIKVFFETLK-SYQINVTIRRELGSSISAACGQL 334
>gi|195977717|ref|YP_002122961.1| ribosomal RNA large subunit methyltransferase N [Streptococcus equi
subsp. zooepidemicus MGCS10565]
gi|254807213|sp|B4U1T1.1|RLMN_STREM RecName: Full=Probable dual-specificity RNA methyltransferase RlmN;
AltName: Full=23S rRNA
(adenine(2503)-C(2))-methyltransferase; AltName:
Full=23S rRNA m2A2503 methyltransferase; AltName:
Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=tRNA (adenine(37)-C(2))-methyltransferase;
AltName: Full=tRNA m2A37 methyltransferase
gi|195974422|gb|ACG61948.1| 23S rRNA methyltransferase and florfenicol/chloramphenicol
resistance protein [Streptococcus equi subsp.
zooepidemicus MGCS10565]
Length = 360
Score = 196 bits (499), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 118/351 (33%), Positives = 192/351 (54%), Gaps = 34/351 (9%)
Query: 31 IWKYVIENPNCEWDEFPSLPSAAYSLLRSKF--KPLTSTLHSVVDSSDDVTTKLLVKLQN 88
IW ++ +DE ++ ++L+ F PL V S D T K L +L +
Sbjct: 30 IWDWLYRKRIQSFDEMTNISKEFLAILKDSFCINPLK---QRVAQESADGTVKYLFELPD 86
Query: 89 GGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSG 148
G +E V+MR ++ G+ ++C+++QVGC +GC FCA+G + + +L+SG
Sbjct: 87 GMLIETVLMR------QHYGQ--------SVCVTTQVGCNIGCTFCASGLIKKQRDLNSG 132
Query: 149 EIVEQLVHASRLSNIR-------NVVFMGMGEPLNNYAALVEAVRIMT---GLPFQVSPK 198
EI Q++ + R +VV MG+GEP +NY ++ +R + GL + +
Sbjct: 133 EITAQIMMVQNYFDQRGQDERVSHVVVMGIGEPFDNYQNVMTFLRTINDDHGLA--IGAR 190
Query: 199 RITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQ 258
ITVST G+ H I +F ++ +NLAVSLHAP ++R IM R+FPL+KL +A++ Y
Sbjct: 191 HITVSTSGLAHKIREFANEGVQVNLAVSLHAPNNELRSSIMRINRSFPLDKLFSAIEYYI 250
Query: 259 KNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVV--VNLIPFNPIGSVSQFRTSSDD 316
+ + +++ EYIML+ VND + A +L L + + + VNLIP+NP+ Q+ S +
Sbjct: 251 ETTNRRVTFEYIMLNKVNDGVEQAQELADLTKRIRKLSYVNLIPYNPVSEHDQYSRSPKE 310
Query: 317 KVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDKISAKSTPPVT 367
+V++F IL+ + + VR++ G DI ACGQL N K K+ T
Sbjct: 311 RVAAFYDILKKN-GVNCVVRQEHGTDIDAACGQLRSNTMKKDRQKAAAART 360
>gi|332288518|ref|YP_004419370.1| ribosomal RNA large subunit methyltransferase N [Gallibacterium
anatis UMN179]
gi|330431414|gb|AEC16473.1| ribosomal RNA large subunit methyltransferase N [Gallibacterium
anatis UMN179]
Length = 372
Score = 196 bits (499), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 108/259 (41%), Positives = 157/259 (60%), Gaps = 16/259 (6%)
Query: 112 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN--------- 162
P R+TLC+SSQVGC + C FC+T GF NL+ EI+ Q+ AS++
Sbjct: 98 PEADRATLCVSSQVGCALACTFCSTAQQGFNRNLTVSEIIGQVWRASKVIGAFGETKVRP 157
Query: 163 IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 221
I NVV MGMGEPL N + +V A+ IM + +S +R+T+ST G+V A++K ++ +
Sbjct: 158 ITNVVMMGMGEPLLNVSNVVPAMEIMLDDFGYGLSKRRVTLSTSGVVPALDKL-GEMIDV 216
Query: 222 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQ---KIFIEYIMLDGVNDE 278
LA+SLHAP ++R +I+P + + +E LM+++ Y K S K+ IEY+MLD VNDE
Sbjct: 217 ALAISLHAPNDELRNEIVPLNKKYNIEMLMDSVNRYLKISNANHGKVTIEYVMLDHVNDE 276
Query: 279 EQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQ 338
+HAHQL K+L+ +NLIP+NP + + SS+ ++ FQK L Y VRK
Sbjct: 277 VEHAHQLAKVLKNTPCKINLIPWNPFPE-APYNKSSNTRIDRFQKTLM-EYGFTVIVRKT 334
Query: 339 MGQDISGACGQLVVNLPDK 357
G DI ACGQL ++ D+
Sbjct: 335 RGDDIDAACGQLAGDVIDR 353
>gi|417937388|ref|ZP_12580690.1| 23S rRNA m2A2503 methyltransferase [Streptococcus infantis X]
gi|343398663|gb|EGV11194.1| 23S rRNA m2A2503 methyltransferase [Streptococcus infantis X]
Length = 361
Score = 196 bits (499), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 119/359 (33%), Positives = 192/359 (53%), Gaps = 30/359 (8%)
Query: 20 KAGIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKF--KPLTSTLHSVVDSSDD 77
+ G K+ IW+++ ++E +L + L +F PL +V S D
Sbjct: 19 EQGEKKFRADQIWEWLYRKRVQTFEEMTNLSKDLIAKLNEQFVVNPLK---QRIVQESAD 75
Query: 78 VTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATG 137
T K L +L +G +E V+MR L ++C+++QVGC +GC FCA+G
Sbjct: 76 GTVKYLFELPDGMLIETVLMRQHYGL--------------SVCVTTQVGCNIGCTFCASG 121
Query: 138 TMGFKSNLSSGEIVEQLVHASRLSNIR-------NVVFMGMGEPLNNYAALVEAVR-IMT 189
+ + +L++GEIV Q++ + + R ++V MG+GEP +NY ++ +R I
Sbjct: 122 LIKKQRDLNNGEIVAQIMLVQKYFDERGQDERVSHIVVMGIGEPFDNYNNVLNFIRTIND 181
Query: 190 GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEK 249
+ + ITVST G+ H I +F ++ +NLAVSLHAP ++R IM RAFP+EK
Sbjct: 182 DKGMAIGARHITVSTSGLAHKIREFANEGVQVNLAVSLHAPNNELRSSIMKINRAFPIEK 241
Query: 250 LMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVV--VNLIPFNPIGSV 307
L A++ Y + + +++ EYIML+ VND + A +L +LL+ + + VNLIP+NP+
Sbjct: 242 LFAAIEYYIETTNRRVTFEYIMLNEVNDGVEQALELAELLKNIKKLSYVNLIPYNPVSEH 301
Query: 308 SQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDKISAKSTPPV 366
Q+ S ++V +F L+ I VR++ G DI ACGQL N + K+ V
Sbjct: 302 DQYSRSPKERVMAFYDTLKKK-GINCVVRQEHGTDIDAACGQLRSNTMKRDRQKAVAEV 359
>gi|117928743|ref|YP_873294.1| ribosomal RNA large subunit methyltransferase N [Acidothermus
cellulolyticus 11B]
gi|205829702|sp|A0LV48.1|RLMN_ACIC1 RecName: Full=Probable dual-specificity RNA methyltransferase RlmN;
AltName: Full=23S rRNA
(adenine(2503)-C(2))-methyltransferase; AltName:
Full=23S rRNA m2A2503 methyltransferase; AltName:
Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=tRNA (adenine(37)-C(2))-methyltransferase;
AltName: Full=tRNA m2A37 methyltransferase
gi|117649206|gb|ABK53308.1| 23S rRNA m(2)A-2503 methyltransferase [Acidothermus cellulolyticus
11B]
Length = 430
Score = 196 bits (499), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 127/362 (35%), Positives = 193/362 (53%), Gaps = 37/362 (10%)
Query: 18 FEKAGIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHSVVDSSDD 77
F I H+ + + ENP DE LP+++ L P + +
Sbjct: 58 FRAVQISAHY----FGRLTENP----DEMTDLPASSRRELVGVLLPPLLRPVRELACDNG 109
Query: 78 VTTKLLVKLQNGGFVEAVIMRY------DSSLGK---YNGKPRPGGPRSTLCISSQVGCK 128
+T K+L +L +G +VE+V+MRY ++LG +G R G R TLC+SSQ GC
Sbjct: 110 LTRKILWRLSDGAYVESVLMRYPPRHSRHAALGAEADADGGSRHG--RVTLCVSSQAGCG 167
Query: 129 MGCNFCATGTMGFKSNLSSGEIVEQLVHASRL----------SNIRNVVFMGMGEPLNNY 178
MGC FCATG G NLS+ EIV Q+ A+R + NVVFMGMGEPL NY
Sbjct: 168 MGCPFCATGQAGLVRNLSAAEIVAQVAVAARTVARGEMAGGPGRLSNVVFMGMGEPLANY 227
Query: 179 AALVEAVRIMTGLP---FQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVR 235
++V+AVR +T P +S + +TVSTVG+V AI + ++ + LAVSLHAP ++R
Sbjct: 228 RSVVDAVRRITEPPPEGLGISQRSVTVSTVGLVPAIERLATEGLAVTLAVSLHAPDDELR 287
Query: 236 CQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVV 295
++P R +P+ ++ A Y + +++++ +EY ++ VND+ A L ++ F
Sbjct: 288 NVLVPINRRWPVRDVLGAAARYAEVTKRRVSVEYALIRDVNDQPWRADALAAQVKEFLGR 347
Query: 296 ---VNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVV 352
VNLIP NP S + S+ + F + L + + TVR G++++GACGQL
Sbjct: 348 LGHVNLIPLNPTPG-SPWTASTPRAQAEFVRRL-AAAGVTVTVRDTRGREVNGACGQLAA 405
Query: 353 NL 354
+
Sbjct: 406 TV 407
>gi|270292529|ref|ZP_06198740.1| radical SAM enzyme, Cfr family [Streptococcus sp. M143]
gi|270278508|gb|EFA24354.1| radical SAM enzyme, Cfr family [Streptococcus sp. M143]
Length = 361
Score = 196 bits (499), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 120/359 (33%), Positives = 191/359 (53%), Gaps = 30/359 (8%)
Query: 20 KAGIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKF--KPLTSTLHSVVDSSDD 77
+ G K+ IW+++ ++E +L + L +F PL +V S D
Sbjct: 19 EQGEKKFRADQIWEWLYRKRVQSFEEMTNLSKDLIAKLNEQFVVNPLK---QRIVQESAD 75
Query: 78 VTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATG 137
T K L +L +G +E V+MR L ++C+++QVGC +GC FCA+G
Sbjct: 76 GTVKYLFELPDGMLIETVLMRQHYGL--------------SVCVTTQVGCNIGCTFCASG 121
Query: 138 TMGFKSNLSSGEIVEQLVHASRLSNIR-------NVVFMGMGEPLNNYAALVEAVR-IMT 189
+ + +L++GEIV Q++ + + R ++V MG+GEP +NY ++ VR I
Sbjct: 122 LIKKQRDLNNGEIVAQIMLVQKYFDERGQDERVSHIVVMGIGEPFDNYNNVLNFVRTIND 181
Query: 190 GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEK 249
+ + ITVST G+ H I F ++ +NLAVSLHAP ++R IM RAFP+EK
Sbjct: 182 DKGMAIGARHITVSTSGLAHKIRDFANEGVQVNLAVSLHAPNNELRSSIMKINRAFPIEK 241
Query: 250 LMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVV--VNLIPFNPIGSV 307
L A++ Y + + +++ EYIML+ VND + A +L +LL+ + + VNLIP+NP+
Sbjct: 242 LFAAIEYYIETTNRRVTFEYIMLNEVNDGIEQALELAELLKNIKKLSYVNLIPYNPVSEH 301
Query: 308 SQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDKISAKSTPPV 366
Q+ S ++V +F L+ I VR++ G DI ACGQL N + K+ V
Sbjct: 302 DQYSRSPKERVMAFYDTLKKK-GINCVVRQEHGTDIDAACGQLRSNTMKRDRQKAVAAV 359
>gi|315613373|ref|ZP_07888282.1| cfr family radical SAM enzyme [Streptococcus sanguinis ATCC 49296]
gi|315314608|gb|EFU62651.1| cfr family radical SAM enzyme [Streptococcus sanguinis ATCC 49296]
Length = 361
Score = 196 bits (498), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 119/358 (33%), Positives = 190/358 (53%), Gaps = 30/358 (8%)
Query: 22 GIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKF--KPLTSTLHSVVDSSDDVT 79
G K+ IW+++ ++E +L + L +F PL +V S D T
Sbjct: 21 GEKKFRADQIWEWLYRKRVQSFEEMTNLSKGLIAKLNEQFVVNPLK---QRIVQESADGT 77
Query: 80 TKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTM 139
K L +L +G +E V+MR L ++C+++QVGC +GC FCA+G +
Sbjct: 78 VKYLFELPDGMLIETVLMRQHYGL--------------SVCVTTQVGCNIGCTFCASGLI 123
Query: 140 GFKSNLSSGEIVEQLVHASRLSNIR-------NVVFMGMGEPLNNYAALVEAVR-IMTGL 191
+ +L++GEIV Q++ + + R ++V MG+GEP +NY ++ VR I
Sbjct: 124 KKQRDLNNGEIVAQIMLVQKYFDERGQDERVSHIVVMGIGEPFDNYNNVLNFVRTINDDK 183
Query: 192 PFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLM 251
+ + ITVST G+ H I F ++ +NLAVSLHAP ++R IM RAFP+EKL
Sbjct: 184 GMAIGARHITVSTSGLAHKIRDFANEGVQVNLAVSLHAPNNELRSSIMKINRAFPIEKLF 243
Query: 252 NALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVV--VNLIPFNPIGSVSQ 309
A++ Y + + +++ EYIML+ VND + A +L +LL+ + + VNLIP+NP+ Q
Sbjct: 244 AAIEYYIETTNRRVTFEYIMLNEVNDGVEQALELAELLKNIKKLSYVNLIPYNPVSEHDQ 303
Query: 310 FRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDKISAKSTPPVT 367
+ S ++V +F L+ + VR++ G DI ACGQL N + K+ V
Sbjct: 304 YSRSPKERVMAFYDTLKKK-GVNCVVRQEHGTDIDAACGQLRSNTMKRDRQKAVAAVN 360
>gi|312127903|ref|YP_003992777.1| radical sam enzyme, cfr family [Caldicellulosiruptor hydrothermalis
108]
gi|311777922|gb|ADQ07408.1| radical SAM enzyme, Cfr family [Caldicellulosiruptor hydrothermalis
108]
Length = 344
Score = 196 bits (498), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 117/341 (34%), Positives = 193/341 (56%), Gaps = 23/341 (6%)
Query: 14 IRAEFEKAGIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHSVVD 73
+R E G K +++++ + + +F +LP + +F L ++L +
Sbjct: 13 LRKWLESVGEKPFRATQVFEWLYKKNATDVMQFTNLPLELRKKIDDEF--LINSLQILQH 70
Query: 74 SSDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNF 133
SD + K L +L + VE+V + Y R G + +C+S+QVGC+M C F
Sbjct: 71 QSDGESIKFLFELCDKNGVESVFLPY-----------RYG---NAICVSTQVGCRMNCRF 116
Query: 134 CATGTMGFKSNLSSGEIVEQLVHASRLS--NIRNVVFMGMGEPLNNYAALVEAVRIMTGL 191
CA+ GF NL+ GE+V+Q+++A + I NVV MG GEP +N + + + I+
Sbjct: 117 CASAIGGFVRNLTPGEMVDQIINAENFTGKRITNVVLMGSGEPFDNIENVFKFIEIINSK 176
Query: 192 PFQ-VSPKRITVSTVGIVHAINKFHSDLPG-LNLAVSLHAPVQDVRCQIMPAARAFPLEK 249
+ + + IT+STVGIV I + D P +NLA+SLHAP +R +++P + +P+E
Sbjct: 177 EGKNIGARHITISTVGIVEGIYRL-CDFPKQVNLAISLHAPNNSLRDKLVPINKKYPIED 235
Query: 250 LMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQ 309
+M A+ Y + + +++ EY ++DGVND + A +LGK+L+ V VNLIP NP+
Sbjct: 236 IMKAVDYYIQRTNRRVTFEYALIDGVNDSIECAQELGKMLKGKLVHVNLIPVNPVEE-KG 294
Query: 310 FRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 350
F+ S +K+ +F + LR SY I+ T+R+++G IS ACGQL
Sbjct: 295 FKRPSKEKIKTFFETLR-SYQIQVTIRRELGSSISAACGQL 334
>gi|225868978|ref|YP_002744926.1| radical SAM superfamily protein [Streptococcus equi subsp.
zooepidemicus]
gi|259491996|sp|C0MD67.1|RLMN_STRS7 RecName: Full=Probable dual-specificity RNA methyltransferase RlmN;
AltName: Full=23S rRNA
(adenine(2503)-C(2))-methyltransferase; AltName:
Full=23S rRNA m2A2503 methyltransferase; AltName:
Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=tRNA (adenine(37)-C(2))-methyltransferase;
AltName: Full=tRNA m2A37 methyltransferase
gi|225702254|emb|CAX00012.1| radical SAM superfamily protein [Streptococcus equi subsp.
zooepidemicus]
Length = 360
Score = 196 bits (498), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 118/351 (33%), Positives = 192/351 (54%), Gaps = 34/351 (9%)
Query: 31 IWKYVIENPNCEWDEFPSLPSAAYSLLRSKF--KPLTSTLHSVVDSSDDVTTKLLVKLQN 88
IW ++ +DE ++ ++L+ F PL V S D T K L +L +
Sbjct: 30 IWDWLYRKRVQSFDEMTNISKEFLAILKDSFCINPLK---QRVAQESADGTVKYLFELPD 86
Query: 89 GGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSG 148
G +E V+MR ++ G+ ++C+++QVGC +GC FCA+G + + +L+SG
Sbjct: 87 GMLIETVLMR------QHYGQ--------SVCVTTQVGCNIGCTFCASGLIKKQRDLNSG 132
Query: 149 EIVEQLVHASRLSNIR-------NVVFMGMGEPLNNYAALVEAVRIMT---GLPFQVSPK 198
EI Q++ + R +VV MG+GEP +NY ++ +R + GL + +
Sbjct: 133 EITAQIMMVQNYFDQRGQDERVSHVVVMGIGEPFDNYQNVMTFLRTINDDHGLA--IGAR 190
Query: 199 RITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQ 258
ITVST G+ H I +F ++ +NLAVSLHAP ++R IM R+FPL+KL +A++ Y
Sbjct: 191 HITVSTSGLAHKIREFANEGVQVNLAVSLHAPNNELRSSIMRINRSFPLDKLFSAIEYYI 250
Query: 259 KNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVV--VNLIPFNPIGSVSQFRTSSDD 316
+ + +++ EYIML+ VND + A +L L + + + VNLIP+NP+ Q+ S +
Sbjct: 251 ETTNRRVTFEYIMLNKVNDGVEQAQELADLTKRIRKLSYVNLIPYNPVSEHDQYSRSPKE 310
Query: 317 KVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDKISAKSTPPVT 367
+V++F IL+ + + VR++ G DI ACGQL N K K+ T
Sbjct: 311 RVAAFYDILKKN-GVNCVVRQEHGTDIDAACGQLRSNTMKKDRQKAATART 360
>gi|403051770|ref|ZP_10906254.1| putative Fe-S-cluster redox enzyme [Acinetobacter bereziniae LMG
1003]
gi|445414088|ref|ZP_21433813.1| 23S rRNA m2A2503 methyltransferase [Acinetobacter sp. WC-743]
gi|444764907|gb|ELW89212.1| 23S rRNA m2A2503 methyltransferase [Acinetobacter sp. WC-743]
Length = 416
Score = 196 bits (498), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 116/302 (38%), Positives = 177/302 (58%), Gaps = 32/302 (10%)
Query: 75 SDDVTTKLLVKLQNGG--FVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCN 132
S D T K + ++ +G VE V++ + G R TLCISSQVGC + C+
Sbjct: 106 SKDGTRKWVFRVGDGAGSLVETVLIPAEDKTGS----------RKTLCISSQVGCALDCS 155
Query: 133 FCATGTMGFKSNLSSGEIVEQLVHAS-----------RLSNIRNVVFMGMGEPLNNYAAL 181
FC+TG GF+ +L EI+ QL A+ R ++ NVV MGMGEPL NY A+
Sbjct: 156 FCSTGKQGFQRDLLPDEIIGQLWMANYSYMEDVPVAERERSVTNVVMMGMGEPLLNYDAV 215
Query: 182 VEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMP 240
+ ++ IM + +S +R+T+ST G+V I++ D+ + LA+SLHAP ++R +++P
Sbjct: 216 LSSMNIMLDDFAYGMSKRRVTLSTSGVVPKIDQLAQDI-DVALAISLHAPNDELRNELVP 274
Query: 241 AARAFPLEKLMNALKEY-----QKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVV 295
+ +PL +L+ A + Y ++S++ + IEY+MLDGVND+ +HA Q+ KLL+
Sbjct: 275 INKKYPLAQLIAACQRYIAKDGNESSRKHVTIEYVMLDGVNDQPEHAQQMIKLLKNLPSK 334
Query: 296 VNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLP 355
+NLIPFNP R SS +++ SFQK L + + T+R+ G DI ACGQLV +
Sbjct: 335 INLIPFNPFPHAPYGR-SSRNRIISFQKTLSDAGFV-CTIRQTRGDDIDAACGQLVGQVA 392
Query: 356 DK 357
D+
Sbjct: 393 DR 394
>gi|386830753|ref|YP_006237407.1| hypothetical protein SAEMRSA15_10510 [Staphylococcus aureus subsp.
aureus HO 5096 0412]
gi|417797939|ref|ZP_12445125.1| 23S rRNA m2A2503 methyltransferase [Staphylococcus aureus subsp.
aureus 21310]
gi|418656881|ref|ZP_13218667.1| 23S rRNA m2A2503 methyltransferase [Staphylococcus aureus subsp.
aureus IS-105]
gi|334277061|gb|EGL95300.1| 23S rRNA m2A2503 methyltransferase [Staphylococcus aureus subsp.
aureus 21310]
gi|375032049|gb|EHS25305.1| 23S rRNA m2A2503 methyltransferase [Staphylococcus aureus subsp.
aureus IS-105]
gi|385196145|emb|CCG15766.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
HO 5096 0412]
Length = 364
Score = 196 bits (498), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 110/313 (35%), Positives = 175/313 (55%), Gaps = 23/313 (7%)
Query: 44 DEFPSLPSAAYSLLRSKFKPLTSTLHSVVDSSDDVTTKLLVKLQNGGFVEAVIMRYDSSL 103
DE +L LL+ F T T +S D T K L +LQ+G +E V+MR+D
Sbjct: 59 DEMTNLSKDLRQLLKDNFTVTTLTTVVKQESKDG-TIKFLFELQDGYTIETVLMRHDYG- 116
Query: 104 GKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRL--- 160
+++C+++QVGC++GC FCA+ G K NL +GEIV Q++ +
Sbjct: 117 -------------NSVCVTTQVGCRIGCTFCASTLGGLKRNLEAGEIVSQVLTVQKALDA 163
Query: 161 --SNIRNVVFMGMGEPLNNYAALVEAVRIMTGL-PFQVSPKRITVSTVGIVHAINKFHSD 217
+ +V MG+GEP NY +++ +RI+ + + ITVST GI+ I +F +
Sbjct: 164 TEERVSQIVIMGIGEPFENYDEMMDFLRIVNDDNSLNIGARHITVSTSGIIPRIYEFADE 223
Query: 218 LPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVND 277
+N AVSLHA +VR ++MP RA+ +EKL+ A++ YQ+ + +++ EY + GVND
Sbjct: 224 DIQINFAVSLHAAKDEVRSRLMPINRAYNVEKLIEAIQYYQEKTNRRVTFEYGLFGGVND 283
Query: 278 EEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRK 337
+ +HA +L L++ VNLIP N + + +T+ +D + F+K L+ I T+R+
Sbjct: 284 QLEHARELAHLIKGLNCHVNLIPVNHVPERNYVKTAKND-IFKFEKELK-RLGINATIRR 341
Query: 338 QMGQDISGACGQL 350
+ G DI ACGQL
Sbjct: 342 EQGSDIDAACGQL 354
>gi|262048118|ref|ZP_06021005.1| hypothetical protein SAD30_1894 [Staphylococcus aureus D30]
gi|259163684|gb|EEW48239.1| hypothetical protein SAD30_1894 [Staphylococcus aureus D30]
Length = 364
Score = 196 bits (498), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 111/315 (35%), Positives = 175/315 (55%), Gaps = 23/315 (7%)
Query: 44 DEFPSLPSAAYSLLRSKFKPLTSTLHSVVDSSDDVTTKLLVKLQNGGFVEAVIMRYDSSL 103
DE +L LL+ F T T +S D T K L +LQ+G +E V+MR+D
Sbjct: 59 DEMTNLSKDLRQLLKDNFTVTTLTTVVKQESKDG-TIKFLFELQDGYTIETVLMRHDYG- 116
Query: 104 GKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRL--- 160
+++C+++QVGC++GC FCA+ G K NL +GEIV Q++ +
Sbjct: 117 -------------NSVCVTTQVGCRIGCTFCASTLGGLKRNLEAGEIVSQVLTVQKALDA 163
Query: 161 --SNIRNVVFMGMGEPLNNYAALVEAVRIMTGL-PFQVSPKRITVSTVGIVHAINKFHSD 217
+ +V MG+GEP NY +++ +RI+ + + ITVST GI+ I F +
Sbjct: 164 TEERVSQIVIMGIGEPFENYDEMMDFLRIVNDDNSLNIGARHITVSTSGIIPRIYDFADE 223
Query: 218 LPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVND 277
+N AVSLHA +VR ++MP RA+ +EKL+ A++ YQ+ + +++ EY + GVND
Sbjct: 224 DIQINFAVSLHAAKDEVRSRLMPINRAYNVEKLIEAIQYYQEKTNRRVTFEYGLFGGVND 283
Query: 278 EEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRK 337
+ +HA +L L++ VNLIP N + + +T+ +D + F+K L+ I T+R+
Sbjct: 284 QLEHARELAHLIKGLNCHVNLIPVNHVPERNYVKTAKND-IFKFEKELK-RLGINATIRR 341
Query: 338 QMGQDISGACGQLVV 352
+ G DI ACGQL V
Sbjct: 342 EQGSDIDAACGQLRV 356
>gi|311739708|ref|ZP_07713543.1| cfr family radical SAM enzyme [Corynebacterium pseudogenitalium
ATCC 33035]
gi|311305524|gb|EFQ81592.1| cfr family radical SAM enzyme [Corynebacterium pseudogenitalium
ATCC 33035]
Length = 374
Score = 196 bits (498), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 124/353 (35%), Positives = 186/353 (52%), Gaps = 33/353 (9%)
Query: 22 GIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHSVVDSSDDVTTK 81
G+ + + K+ E+ ++ +P+ ++ F P + D TTK
Sbjct: 41 GLPKFRAKQLAKHYYEHYTDNVEDMTDIPAGKREAVKEAFFPELMQPIRTTSTDDGETTK 100
Query: 82 LLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGF 141
L +L +G +E+V+MRY PG R+TLCISSQ GC M C FCATG G
Sbjct: 101 SLWRLHDGTLLESVLMRY------------PG--RATLCISSQAGCGMACPFCATGQGGL 146
Query: 142 KSNLSSGEIVEQLVH--------ASRLSNIRNVVFMGMGEPLNNYAALVEAVRIMTG--- 190
NLS+GEIVEQ H RLSN VVFMGMGEPL NY +V+AVR +TG
Sbjct: 147 DRNLSTGEIVEQFRHAAAAMAAEGGRLSN---VVFMGMGEPLANYKRVVQAVRQITGQDG 203
Query: 191 LPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKL 250
F +S + +TVSTVG+ AI K + LAVSLH P ++R ++P + ++++
Sbjct: 204 AGFGLSQRNVTVSTVGLAPAIRKLADEDLACTLAVSLHTPDDELRDGLVPVNNRWSVDEV 263
Query: 251 MNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLET---FQVVVNLIPFNPIGSV 307
++A + Y S +++ IEY ++ ND++ A LG+ L +V VN+IP NP
Sbjct: 264 LDAARYYADKSARRVSIEYALIRDKNDQDFRADMLGRKLHQKLGSKVHVNVIPLNPTPG- 322
Query: 308 SQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDKISA 360
S++ + D+ F + ++ + + TVR G +I+ ACGQL + + SA
Sbjct: 323 SEWDAAPQDRQDEFVRRVQ-AQGVPCTVRDTKGDEIAAACGQLAADEREDKSA 374
>gi|283832102|ref|ZP_06351843.1| radical SAM enzyme, Cfr family [Citrobacter youngae ATCC 29220]
gi|291071728|gb|EFE09837.1| radical SAM enzyme, Cfr family [Citrobacter youngae ATCC 29220]
Length = 388
Score = 196 bits (498), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 108/259 (41%), Positives = 155/259 (59%), Gaps = 16/259 (6%)
Query: 112 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN--------- 162
P R+TLC+SSQVGC + C FC+T GF NL EI+ Q+ A+++
Sbjct: 114 PEDDRATLCVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVGAVKATGVRP 173
Query: 163 IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 221
I NVV MGMGEPL N +V A+ IM F +S +R+T+ST G+V A++K D+ +
Sbjct: 174 ITNVVMMGMGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDV 232
Query: 222 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDE 278
LA+SLHAP ++R +I+P + + +E + A++ Y + S Q ++ IEY+MLD VND
Sbjct: 233 ALAISLHAPNDEIRDEIVPINKKYNIETFLGAVRRYLEKSNANQGRVTIEYVMLDHVNDG 292
Query: 279 EQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQ 338
+HAHQL +LL+ +NLIP+NP R SS+ ++ F K+L G Y T VRK
Sbjct: 293 TEHAHQLAELLKDTPCKINLIPWNPFPGAPYGR-SSNSRIDRFSKVLMG-YGFTTIVRKT 350
Query: 339 MGQDISGACGQLVVNLPDK 357
G DI ACGQL ++ D+
Sbjct: 351 RGDDIDAACGQLAGDVIDR 369
>gi|390568820|ref|ZP_10249112.1| radical SAM enzyme, Cfr family protein [Burkholderia terrae BS001]
gi|420250111|ref|ZP_14753338.1| 23S rRNA methyltransferase [Burkholderia sp. BT03]
gi|389939169|gb|EIN01006.1| radical SAM enzyme, Cfr family protein [Burkholderia terrae BS001]
gi|398062477|gb|EJL54251.1| 23S rRNA methyltransferase [Burkholderia sp. BT03]
Length = 382
Score = 196 bits (498), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 133/338 (39%), Positives = 180/338 (53%), Gaps = 43/338 (12%)
Query: 45 EFPSLPSAAYSLLRSKFKPLTS-TLHSVVDS--SDDVTTKLLVKLQNGGFVEAVIMRYDS 101
+F + A SL R K K S T+ +V S D T K LV + NG VE V +
Sbjct: 45 DFDGMTDLAKSL-REKLKGRASITMPPIVSDHISTDGTRKWLVDVGNGNAVETVFI---- 99
Query: 102 SLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHAS--- 158
P R TLC+SSQ GC + C FC+TG GF NLS+GEI+ QL A
Sbjct: 100 ----------PEETRGTLCVSSQAGCAVNCRFCSTGKQGFSRNLSTGEIIGQLRMAEFAL 149
Query: 159 RLS-----------------NIRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRI 200
R S + NVV MGMGEPL NY A+V A+R+M + +S +R+
Sbjct: 150 RASLGTAGGRATGGEGKGERVVTNVVMMGMGEPLLNYDAVVPAMRLMLDDNAYGLSRRRV 209
Query: 201 TVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKN 260
T+ST G+V +++ +DLP + LAVSLHAP +R ++P + +PL +LM A + Y K
Sbjct: 210 TLSTSGVVPMMDRLGADLP-VALAVSLHAPNDALRDVLVPLNKKYPLRELMAACQRYLKV 268
Query: 261 SQQK-IFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVS 319
+ + I EY MLDGVND E HA +L + NLIPFNP FR S ++++
Sbjct: 269 APRDFITFEYCMLDGVNDSEAHARELLAVTRDVPCKFNLIPFNPFPESGLFR-SKNEQIK 327
Query: 320 SFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDK 357
F ++L + + TTVRK G DI ACGQL + D+
Sbjct: 328 RFAQVLIDA-GVVTTVRKTRGDDIDAACGQLAGAVKDR 364
>gi|373452530|ref|ZP_09544443.1| 23S rRNA methyltransferase [Eubacterium sp. 3_1_31]
gi|371966399|gb|EHO83889.1| 23S rRNA methyltransferase [Eubacterium sp. 3_1_31]
Length = 352
Score = 196 bits (498), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 121/335 (36%), Positives = 180/335 (53%), Gaps = 37/335 (11%)
Query: 31 IWKYVIENPNCEWDEFPSLPSAAYSLLRSKF--KPLTSTLHSVVDSSDDVTTKLLVKLQN 88
I++++ DE L +L++ + KPLT V S D TTK L L++
Sbjct: 29 IFQWLYRKRVTSIDEMSDLSKETREILKANYALKPLTLKDKQV---SSDGTTKYLFALED 85
Query: 89 GGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSG 148
G +E+V+M++D GK ++C++SQVGC M C FCA+G K NL+SG
Sbjct: 86 GSLIESVLMQFD--YGK------------SICVTSQVGCNMSCAFCASGLTKKKRNLTSG 131
Query: 149 EIVEQLVHA--------SRLSNIRNVVFMGMGEPLNNYAALVEAVRIMT---GLPFQVSP 197
E+V Q+++ RLS+I V MG GEP +NY ++ + + GL +
Sbjct: 132 EMVAQVMYVQQDLDKQEERLSHI---VVMGTGEPFDNYENVMNFLSTVNHDRGLG--IGA 186
Query: 198 KRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEY 257
+ IT+ST G+V I +F + NLA+SLHA +R ++MP A+PLE+LM A+++Y
Sbjct: 187 RHITISTCGVVPKIYEFSKEHTQYNLAISLHASNNTLRDELMPINHAYPLEELMKAIRQY 246
Query: 258 QKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDK 317
+ +++ EYI+L GVND+++H QL KLL VNLIP+N + F+
Sbjct: 247 AAENNRRLTFEYILLRGVNDQKEHVKQLAKLLRGLNAYVNLIPYNAVDEKG-FQGVDHAH 305
Query: 318 VSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVV 352
F L IR T+RK+ G DI ACGQL V
Sbjct: 306 AMVFYDALMKE-GIRCTIRKEHGADIDAACGQLRV 339
>gi|404418447|ref|ZP_11000214.1| ribosomal RNA large subunit methyltransferase N [Staphylococcus
arlettae CVD059]
gi|403489040|gb|EJY94618.1| ribosomal RNA large subunit methyltransferase N [Staphylococcus
arlettae CVD059]
Length = 364
Score = 196 bits (498), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 110/326 (33%), Positives = 178/326 (54%), Gaps = 23/326 (7%)
Query: 31 IWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHSVVDSSDDVTTKLLVKLQNGG 90
I++++ E DE +L +LL F +T+ V S D T K L +LQ+G
Sbjct: 46 IFEWLYEKRVDSIDEMTNLSKELRNLLSEHF-AITTLTTVVKQESKDGTIKFLFELQDGY 104
Query: 91 FVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEI 150
+E V+MR++ +++C+++QVGC++GC FCA+ G K NL +GEI
Sbjct: 105 TIETVLMRHEYG--------------NSVCVTTQVGCRIGCTFCASTLGGLKRNLEAGEI 150
Query: 151 VEQLVHASRL-----SNIRNVVFMGMGEPLNNYAALVEAVRIMTGLP-FQVSPKRITVST 204
V Q++ + + +V MG+GEP NY +++ ++I+ + + ITVST
Sbjct: 151 VSQVLTVQKALDESEERVSQIVIMGIGEPFENYDEMMDFLKIVNNDNGLNIGARHITVST 210
Query: 205 VGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQK 264
GI+ I F + +N AVSLH ++R ++MP RA+ +EKLM A+ YQ+ + ++
Sbjct: 211 SGIIPRIYDFADEDIQINFAVSLHGAKDEIRSRLMPINRAYNVEKLMEAIHYYQEKTNRR 270
Query: 265 IFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKI 324
I EY + GVND+ +HA +L L++ VNLIP N + + +T +D + F+K
Sbjct: 271 ITFEYGLFGGVNDQLEHARELAHLIQKLNCHVNLIPVNHVPERNYVKTPKED-IFKFEKE 329
Query: 325 LRGSYNIRTTVRKQMGQDISGACGQL 350
L+ I T+R++ G DI ACGQL
Sbjct: 330 LK-RLGINATIRREQGSDIDAACGQL 354
>gi|379020927|ref|YP_005297589.1| ribosomal RNA large subunit methyltransferase N [Staphylococcus
aureus subsp. aureus M013]
gi|418561410|ref|ZP_13125901.1| 23S rRNA m2A2503 methyltransferase [Staphylococcus aureus subsp.
aureus 21262]
gi|418950784|ref|ZP_13502927.1| 23S rRNA m2A2503 methyltransferase [Staphylococcus aureus subsp.
aureus IS-160]
gi|359830236|gb|AEV78214.1| Ribosomal RNA large subunit methyltransferase N [Staphylococcus
aureus subsp. aureus M013]
gi|371977621|gb|EHO94885.1| 23S rRNA m2A2503 methyltransferase [Staphylococcus aureus subsp.
aureus 21262]
gi|375375615|gb|EHS79188.1| 23S rRNA m2A2503 methyltransferase [Staphylococcus aureus subsp.
aureus IS-160]
Length = 364
Score = 196 bits (498), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 110/313 (35%), Positives = 174/313 (55%), Gaps = 23/313 (7%)
Query: 44 DEFPSLPSAAYSLLRSKFKPLTSTLHSVVDSSDDVTTKLLVKLQNGGFVEAVIMRYDSSL 103
DE +L LL+ F T T +S D T K L +LQ+G +E V+MR+D
Sbjct: 59 DEMTNLSKGLRQLLKDNFTVTTLTTVVKQESKDG-TIKFLFELQDGYTIETVLMRHDYG- 116
Query: 104 GKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRL--- 160
+++C+++QVGC++GC FCA+ G K NL +GEIV Q++ +
Sbjct: 117 -------------NSVCVTTQVGCRIGCTFCASTLGGLKRNLEAGEIVSQVLTVQKALDA 163
Query: 161 --SNIRNVVFMGMGEPLNNYAALVEAVRIMTGL-PFQVSPKRITVSTVGIVHAINKFHSD 217
+ +V MG+GEP NY +++ +RI+ + + ITVST GI+ I F +
Sbjct: 164 TEERVSQIVIMGIGEPFENYDEMMDFLRIVNDDNSLNIGARHITVSTSGIIPRIYDFADE 223
Query: 218 LPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVND 277
+N AVSLHA +VR ++MP RA+ +EKL+ A++ YQ+ + +++ EY + GVND
Sbjct: 224 DIQINFAVSLHAAKDEVRSRLMPINRAYNVEKLIEAIQYYQEKTNRRVTFEYGLFGGVND 283
Query: 278 EEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRK 337
+ +HA +L L++ VNLIP N + + +T+ +D + F+K L+ I T+R+
Sbjct: 284 QLEHARELAHLIKGLNCHVNLIPVNHVPERNYVKTAKND-IFKFEKELK-RLGINATIRR 341
Query: 338 QMGQDISGACGQL 350
+ G DI ACGQL
Sbjct: 342 EQGSDIDAACGQL 354
>gi|357237976|ref|ZP_09125314.1| 23S rRNA m2A2503 methyltransferase [Streptococcus ictaluri 707-05]
gi|356753222|gb|EHI70340.1| 23S rRNA m2A2503 methyltransferase [Streptococcus ictaluri 707-05]
Length = 347
Score = 196 bits (498), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 119/345 (34%), Positives = 188/345 (54%), Gaps = 30/345 (8%)
Query: 31 IWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHSVVDSSDDVTTKLLVKLQNGG 90
IW ++ + ++E ++ +LL F L VV S D T K L +L +
Sbjct: 15 IWDWLYKKRVQSFEEMTNISKDFIALLNEHF-CLNPLKQRVVQESADGTVKYLFELPDRM 73
Query: 91 FVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEI 150
+E V+MR ++ G ++C+++QVGC +GC FCA+G + + +L+SGEI
Sbjct: 74 LIETVLMR------QHYG--------HSVCVTTQVGCNIGCTFCASGLIKKQRDLTSGEI 119
Query: 151 VEQLVHASRLSNIR-------NVVFMGMGEPLNNYAALVEAVRIMT---GLPFQVSPKRI 200
Q++ + + R +VV MG+GEP +NY ++ +R + GL + + I
Sbjct: 120 TAQIMLVQKYFDDRGQDERVSHVVVMGIGEPFDNYKNVMSFLRTINDDNGLA--IGARHI 177
Query: 201 TVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKN 260
TVST G+ H I F ++ +NLAVSLHAP D+R IM R+FPLEKL A++ Y +
Sbjct: 178 TVSTSGLAHKIRDFANEGVQVNLAVSLHAPNNDLRSSIMRINRSFPLEKLFAAIEYYIET 237
Query: 261 SQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVV--VNLIPFNPIGSVSQFRTSSDDKV 318
+ +++ EYIML+ VND + A +L L + + + VNLIP+NP+ Q+ S +V
Sbjct: 238 TNRRVTFEYIMLNQVNDGVEQAQELADLTKNIRKLSYVNLIPYNPVSEHDQYSRSPKKRV 297
Query: 319 SSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDKISAKST 363
S+F +L+ + + VR++ G DI ACGQL N K K+T
Sbjct: 298 SAFDDVLKKN-GVNCVVRQEHGTDIDAACGQLRSNTMKKDREKAT 341
>gi|91775976|ref|YP_545732.1| hypothetical protein Mfla_1623 [Methylobacillus flagellatus KT]
gi|123078840|sp|Q1H0U6.1|RLMN_METFK RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|91709963|gb|ABE49891.1| 23S rRNA m(2)A-2503 methyltransferase [Methylobacillus flagellatus
KT]
Length = 362
Score = 196 bits (498), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 119/293 (40%), Positives = 166/293 (56%), Gaps = 27/293 (9%)
Query: 75 SDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFC 134
S+D T K L+ + G VE V + P R TLC+SSQVGC + C FC
Sbjct: 73 SEDGTRKWLIDVGAGNGVETVFI--------------PEDDRGTLCVSSQVGCALDCTFC 118
Query: 135 ATGTMGFKSNLSSGEIVEQLVHASRLSN--------IRNVVFMGMGEPLNNYAALVEAVR 186
+TG GF NLS EI+ QL A++ I NVV MGMGEPL N+ +V A+
Sbjct: 119 STGRQGFNRNLSVSEIIGQLWVANKALGRDPKGDRIISNVVMMGMGEPLANFDNVVAAMN 178
Query: 187 IM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAF 245
IM + +S +R+T+ST G+V A+++ + P + LAVSLHAP +R +I+P R +
Sbjct: 179 IMLDDSAYGLSRRRVTLSTSGMVPAMDRLREECP-VALAVSLHAPNDALRDEIVPINRKY 237
Query: 246 PLEKLMNALKEY-QKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPI 304
P+ +LM A + Y +K + + EY+MLDGVND +HA QL +++ NLIPFNP
Sbjct: 238 PIAQLMAACQRYLEKAPRDFVTFEYVMLDGVNDTAEHARQLLNIVQDVPCKFNLIPFNPF 297
Query: 305 GSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDK 357
+ S + TS D + F+ IL + + TT RK G+DI ACGQL + DK
Sbjct: 298 PN-SGYDTSKPDNIRRFRDILMQAGYVVTT-RKTRGEDIDAACGQLAGKVQDK 348
>gi|222153431|ref|YP_002562608.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
uberis 0140J]
gi|254807218|sp|B9DUW7.1|RLMN_STRU0 RecName: Full=Probable dual-specificity RNA methyltransferase RlmN;
AltName: Full=23S rRNA
(adenine(2503)-C(2))-methyltransferase; AltName:
Full=23S rRNA m2A2503 methyltransferase; AltName:
Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=tRNA (adenine(37)-C(2))-methyltransferase;
AltName: Full=tRNA m2A37 methyltransferase
gi|222114244|emb|CAR42840.1| radical SAM superfamily protein [Streptococcus uberis 0140J]
Length = 361
Score = 196 bits (498), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 120/361 (33%), Positives = 196/361 (54%), Gaps = 34/361 (9%)
Query: 22 GIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKF--KPLTSTLHSVVDSSDDVT 79
G K+ IW ++ + ++E ++ +LL F PL +V S D T
Sbjct: 21 GQKKFRATQIWDWLYKKRVQSFEEMTNISKDFIALLNEHFCVNPLK---QRIVQESADGT 77
Query: 80 TKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTM 139
K L +L +G +E V+MR ++ G ++C+++QVGC +GC FCA+G +
Sbjct: 78 VKYLFELPDGMLIETVLMR------QHYG--------HSVCVTTQVGCNIGCTFCASGLI 123
Query: 140 GFKSNLSSGEIVEQLVHASRLSNIR-------NVVFMGMGEPLNNYAALVEAVRIMT--- 189
+ +L++GEI Q++ + + R +VV MG+GEP +NY +++ +R +
Sbjct: 124 KKQRDLNNGEITAQIMLVQKYFDERGQDERVSHVVVMGIGEPFDNYDNVMKFLRTINDDN 183
Query: 190 GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEK 249
GL + + ITVST G+ H I +F ++ +NLAVSLHAP ++R IM R+FPLEK
Sbjct: 184 GLA--IGARHITVSTSGLAHKIREFANEGVQVNLAVSLHAPNNELRSSIMRINRSFPLEK 241
Query: 250 LMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVV--VNLIPFNPIGSV 307
L A++ Y + + +++ EYIML+ VND + A +L L + + + VNLIP+NP+
Sbjct: 242 LFAAIEYYIETTNRRVTFEYIMLNEVNDGVEQAQELADLTKKIRKLSYVNLIPYNPVSEH 301
Query: 308 SQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDKISAKSTPPVT 367
Q+ S ++V++F +L+ + + VR++ G DI ACGQL N K K V
Sbjct: 302 DQYSRSPKERVAAFYDVLKKN-GVNCVVRQEHGTDIDAACGQLRSNTMKKDRQKVVAAVA 360
Query: 368 D 368
D
Sbjct: 361 D 361
>gi|15615069|ref|NP_243372.1| ribosomal RNA large subunit methyltransferase N [Bacillus
halodurans C-125]
gi|81786443|sp|Q9K9Y8.1|RLMN_BACHD RecName: Full=Probable dual-specificity RNA methyltransferase RlmN;
AltName: Full=23S rRNA
(adenine(2503)-C(2))-methyltransferase; AltName:
Full=23S rRNA m2A2503 methyltransferase; AltName:
Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=tRNA (adenine(37)-C(2))-methyltransferase;
AltName: Full=tRNA m2A37 methyltransferase
gi|10175126|dbj|BAB06225.1| BH2506 [Bacillus halodurans C-125]
Length = 362
Score = 196 bits (498), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 112/329 (34%), Positives = 185/329 (56%), Gaps = 29/329 (8%)
Query: 31 IWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHSVV-DSSDDVTTKLLVKLQNG 89
I++++ E ++ E +L + L F +TL +V S D T K L +L +G
Sbjct: 44 IFEWLYEKRVKQFQEMTNLSKDLRAKLEKHFN--LTTLKTVTKQQSSDGTIKFLFELHDG 101
Query: 90 GFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGE 149
+E V+MR++ +++C+++QVGC++GC FCA+ G K NL +GE
Sbjct: 102 YSIETVVMRHNYG--------------NSVCVTTQVGCRLGCTFCASTLGGLKRNLEAGE 147
Query: 150 IVEQLVHASRL-----SNIRNVVFMGMGEPLNNYAALVEAVRIMT---GLPFQVSPKRIT 201
IV Q+V A R + ++V MG+GEP +NY AL+ ++ + GL + + IT
Sbjct: 148 IVAQVVEAQRAMDEQGERVGSIVVMGIGEPFDNYQALMPFLKTVNHDKGL--NIGARHIT 205
Query: 202 VSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNS 261
VST G+V I +F + +N A+SLHAP ++R ++MP RA+PL KLM+A++ Y +
Sbjct: 206 VSTSGVVPKIYQFADEGLQINFAISLHAPNTELRSKLMPVNRAWPLPKLMDAIRYYIDKT 265
Query: 262 QQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSF 321
+++ EY + G ND+ +HA +L L++ + VNLIP N + RT D++ +F
Sbjct: 266 GRRVTFEYGLFGGENDQVEHAEELADLIKDIKCHVNLIPVNYVPERDYVRTPR-DQIFAF 324
Query: 322 QKILRGSYNIRTTVRKQMGQDISGACGQL 350
++ L+ + T+R++ G DI ACGQL
Sbjct: 325 ERTLK-ERGVNVTIRREQGHDIDAACGQL 352
>gi|334147993|ref|YP_004510922.1| ribosomal RNA large subunit methyltransferase N [Porphyromonas
gingivalis TDC60]
gi|333805149|dbj|BAK26356.1| ribosomal RNA large subunit methyltransferase N [Porphyromonas
gingivalis TDC60]
Length = 352
Score = 196 bits (498), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 111/296 (37%), Positives = 174/296 (58%), Gaps = 21/296 (7%)
Query: 70 SVVDSSDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKM 129
S V S D T K L + G FVE+V++ P G R+TLCISSQVGCKM
Sbjct: 76 SDVQCSVDGTKKYLFPVGEGRFVESVLI--------------PEGDRATLCISSQVGCKM 121
Query: 130 GCNFCATGTMGFKSNLSSGEIVEQLVHASRLSNIRNVVFMGMGEPLNNYAALVEAVRIMT 189
C FC TG G+ NLS+ EI+ Q+ + + N+V+MGMGEPL+N ++ ++ +T
Sbjct: 122 DCLFCMTGKQGWNGNLSAAEILNQIFSVDEAAELTNLVYMGMGEPLDNTDEVLRSIEALT 181
Query: 190 GLPFQV--SPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPL 247
P+ + SPKRITVST+G + +F ++ +LAVSLH+P + R ++MP +AFP+
Sbjct: 182 E-PWGMGWSPKRITVSTIG-AKGLERFLAE-SRCHLAVSLHSPFPEERRKLMPGEKAFPI 238
Query: 248 EKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSV 307
+ ++ ++ Y + Q+++ EYI+ DG+ND+ +HA +L +L +NLI F+ I +V
Sbjct: 239 MQTLDRIRVYDFSGQRRVSFEYIVFDGLNDDMRHADELAAILRGIPCRINLIRFHKIPAV 298
Query: 308 SQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDKISAKST 363
S R+S ++ +F+K + S+ T+R G+DI ACG L + + KS+
Sbjct: 299 S-LRSSDTARMEAFRKRME-SHGYTCTIRASRGEDIFAACGMLSTSKAESSEEKSS 352
>gi|367470443|ref|ZP_09470146.1| Ribosomal RNA large subunit methyltransferase N [Patulibacter sp.
I11]
gi|365814500|gb|EHN09695.1| Ribosomal RNA large subunit methyltransferase N [Patulibacter sp.
I11]
Length = 574
Score = 196 bits (498), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 126/350 (36%), Positives = 189/350 (54%), Gaps = 28/350 (8%)
Query: 5 YRSVFDGGIIRAEFEKAGIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPL 64
+ D ++R E+ + IWK+ + + + E +LP+A L S+ P
Sbjct: 242 HHRCVDLDLLRTTLEELEQPRFRFDQIWKWTADGVSG-YHEMTNLPAALREQL-SERVPF 299
Query: 65 TSTLHSVVDS-SDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISS 123
STLH V + + D T KLL+ +G +E V+MRY R ++C+SS
Sbjct: 300 -STLHQVRSAKASDGTEKLLLTTHDGRPIETVLMRYKDG-------------RRSICVSS 345
Query: 124 QVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSNIRNVVFMGMGEPLNNYAALVE 183
Q GC + C FCATG M F NL++ EI++Q + RL + + VFMGMGEP+ N ++E
Sbjct: 346 QSGCPLTCTFCATGQMKFGRNLTAWEILDQALALRRLDALNHCVFMGMGEPMMNLPNVLE 405
Query: 184 AVRIMTGLPFQVSPKRITVSTVGIVHAINKF-HSDLPGLNLAVSLHAPVQDVRCQIMPAA 242
R + L ++ +R +STVG V I++ SD+P + LA SLHAP +R +IMP
Sbjct: 406 VCRRLPDL--GITNRRTGISTVGWVPGIDQLTESDVP-VRLAWSLHAPEDQLRSEIMPVN 462
Query: 243 RAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFN 302
+ L + A + + ++ IF+EY+ML GVND A QL LLE ++ +NLIP+N
Sbjct: 463 DRYALADVKAACDRFYERRRKMIFVEYVMLAGVNDSVAQARQLADLLEPWKYKINLIPYN 522
Query: 303 PIGSVSQFRTSSDDKVSSFQKIL--RGSYNIRTTVRKQMGQDISGACGQL 350
P S+ + S+ + +F+ L RG YN T+R G+DI ACGQL
Sbjct: 523 PTDSI--YDGSARGSMDAFRDALEDRG-YN--ATIRLIRGRDIDAACGQL 567
>gi|431926418|ref|YP_007239452.1| 23S rRNA m(2)A-2503 methyltransferase [Pseudomonas stutzeri RCH2]
gi|431824705|gb|AGA85822.1| 23S rRNA m(2)A-2503 methyltransferase [Pseudomonas stutzeri RCH2]
Length = 382
Score = 196 bits (498), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 127/356 (35%), Positives = 195/356 (54%), Gaps = 38/356 (10%)
Query: 18 FEKAGIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHSVV---DS 74
FE G K+ + K++ ++D +L A LR K K + D
Sbjct: 22 FESIGEKRFRAGQVMKWIHHFGVDDFDAMSNLGKA----LREKLKACAEIRGPEIVSEDI 77
Query: 75 SDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFC 134
S D T K +V++ +G VE V + P G R TLC+SSQ GC + C+FC
Sbjct: 78 SSDGTRKWVVRVASGSCVETVYI--------------PQGGRGTLCVSSQAGCALDCSFC 123
Query: 135 ATGTMGFKSNLSSGEIVEQLVHASRL---------SNIRNVVFMGMGEPLNNYAALVEAV 185
+TG GF SNL++ E++ Q+ A++ I NVV MGMGEPL N+ +V A+
Sbjct: 124 STGKQGFNSNLTAAEVIGQVWIANKSFGSIPAKIDRAITNVVMMGMGEPLLNFDNVVAAM 183
Query: 186 RIMT-GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARA 244
IM L + +S +++T+ST G+V I++ + + ++LA+SLHAP +R Q++P +
Sbjct: 184 HIMMDDLGYGISKRKVTLSTSGVVPMIDEL-AKVIDVSLALSLHAPNNALRDQLVPINKK 242
Query: 245 FPLEKLMNALKEY--QKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFN 302
+PL+ L++A K Y Q ++ + IEY +L G+ND+ +HA Q+ LL +NLIPFN
Sbjct: 243 YPLDMLLSACKRYISQLGEKRVLTIEYTLLKGINDQPEHAEQMITLLADIPCKINLIPFN 302
Query: 303 PIGSVSQFRTSSDDKVSSFQKIL-RGSYNIRTTVRKQMGQDISGACGQLVVNLPDK 357
P S + S++ + FQ IL +G +N+ TVR G+DI ACGQLV + D+
Sbjct: 303 PFPH-SGYERPSNNAIRRFQDILHKGGHNV--TVRTTRGEDIDAACGQLVGQVLDR 355
>gi|300920672|ref|ZP_07137083.1| radical SAM enzyme, Cfr family [Escherichia coli MS 115-1]
gi|419921561|ref|ZP_14439613.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
541-15]
gi|432534838|ref|ZP_19771810.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE234]
gi|300412353|gb|EFJ95663.1| radical SAM enzyme, Cfr family [Escherichia coli MS 115-1]
gi|388397512|gb|EIL58490.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
541-15]
gi|431059593|gb|ELD68946.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE234]
Length = 384
Score = 196 bits (498), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 108/259 (41%), Positives = 156/259 (60%), Gaps = 16/259 (6%)
Query: 112 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN--------- 162
P R+TLC+SSQVGC + C FC+T GF NL EI+ Q+ A+++
Sbjct: 110 PEDDRATLCVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVGAAKVTGQRP 169
Query: 163 IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 221
I NVV MGMGEPL N +V A+ IM F +S +R+T+ST G+V A++K D+ +
Sbjct: 170 ITNVVMMGMGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDV 228
Query: 222 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDE 278
LA+SLHAP ++R +I+P + + +E + A++ Y + S Q ++ IEY+MLD VND+
Sbjct: 229 ALAISLHAPNDEIRDEIVPINKKYNIETFLAAVRRYLEKSNANQGRVTIEYVMLDHVNDD 288
Query: 279 EQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQ 338
+HAHQL +LL+ +NLIP+NP R SS+ ++ F K+L SY T VRK
Sbjct: 289 TEHAHQLAELLKDTPCKINLIPWNPFPGAPYGR-SSNSRIDRFSKVLM-SYGFTTIVRKT 346
Query: 339 MGQDISGACGQLVVNLPDK 357
G DI ACGQL ++ D+
Sbjct: 347 RGDDIDAACGQLAGDVIDR 365
>gi|300113467|ref|YP_003760042.1| radical SAM enzyme, Cfr family [Nitrosococcus watsonii C-113]
gi|299539404|gb|ADJ27721.1| radical SAM enzyme, Cfr family [Nitrosococcus watsonii C-113]
Length = 372
Score = 196 bits (498), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 129/360 (35%), Positives = 191/360 (53%), Gaps = 39/360 (10%)
Query: 18 FEKAGIKQHFIPLIWKYVIENPNCEW------DEFPSLPSAAYSLLRSKFKPLTSTLHSV 71
++AG++ F L K W +F ++ SL + + +L +
Sbjct: 11 LDRAGLEAFFTCLGEKPFRARQVLRWIYQRFVTDFSAMTDLNKSLRKRLAESAVISLPEI 70
Query: 72 VDS--SDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKM 129
V S D T K L+++ +E V + P R TLCISSQVGC +
Sbjct: 71 VQQHRSADGTRKWLLRIHGNNCIETVFI--------------PEEDRGTLCISSQVGCIL 116
Query: 130 GCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN--------IRNVVFMGMGEPLNNYAAL 181
C+FCATG GF NL+ EI+ QL A+++ I NVV MGMGEPL N+ +
Sbjct: 117 DCSFCATGKQGFNRNLAISEIIGQLWLANKILGRTPKGERIITNVVMMGMGEPLANFNNV 176
Query: 182 VEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMP 240
V A+ +M + +S +R+T+ST G+V AI++ + P ++LAVSLHAP +R +++P
Sbjct: 177 VAAMNLMLDDFSYGLSWRRVTLSTAGMVPAIDRLRAVCP-VSLAVSLHAPTDKLRDELVP 235
Query: 241 AARAFPLEKLMNALKEYQKNSQQK-IFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLI 299
+ +PLE L++A + Y +++ + EY+ML VND HA L +LL+ VNLI
Sbjct: 236 LNKKYPLEDLLSACRRYVAGDRRRAVTFEYVMLADVNDSFSHARALLRLLQGLPAKVNLI 295
Query: 300 PFNPI-GSVSQFRTSSDDKVSSF-QKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDK 357
PFNP GSV +R S + + F +K+LRG I T RK G DI+ ACGQL + D+
Sbjct: 296 PFNPFPGSV--YRRSDAETIDRFREKLLRGG--IMTVTRKTRGDDIAAACGQLAGQVQDR 351
>gi|262371087|ref|ZP_06064409.1| cfr family radical SAM enzyme [Acinetobacter johnsonii SH046]
gi|381197790|ref|ZP_09905129.1| putative Fe-S-cluster redox enzyme [Acinetobacter lwoffii WJ10621]
gi|262313973|gb|EEY95018.1| cfr family radical SAM enzyme [Acinetobacter johnsonii SH046]
Length = 411
Score = 196 bits (498), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 108/261 (41%), Positives = 163/261 (62%), Gaps = 20/261 (7%)
Query: 114 GPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHAS-----------RLSN 162
G R TLCISSQVGC + C+FC+TG GF+ +L+ EI+ QL A+ R +
Sbjct: 132 GLRRTLCISSQVGCALDCSFCSTGKQGFQRDLNPDEIIGQLWVANYSYMEDVPVAERERS 191
Query: 163 IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 221
+ NVV MGMGEPL NY A++ ++RIM + +S +R+T+ST G+V I++ D+ +
Sbjct: 192 VTNVVMMGMGEPLLNYDAVLSSMRIMLDDFAYGMSKRRVTLSTSGVVPKIDQLAQDI-DV 250
Query: 222 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEY-----QKNSQQKIFIEYIMLDGVN 276
LA+SLHAP ++R +++P + +PL +L+ A + Y +++++ + IEY+MLDGVN
Sbjct: 251 ALAISLHAPNDELRNELVPINKKYPLAQLIAACQRYIAKDGNESARKHVTIEYVMLDGVN 310
Query: 277 DEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVR 336
D +HA Q+ KLL+ +NLIPFNP R SS +++ SFQK L + + T+R
Sbjct: 311 DHPEHAQQMIKLLKNLPSKINLIPFNPFPHAPYGR-SSRNRIISFQKTLSDAGFV-CTIR 368
Query: 337 KQMGQDISGACGQLVVNLPDK 357
+ G DI ACGQLV + D+
Sbjct: 369 QTRGDDIDAACGQLVGQVADR 389
>gi|268601574|ref|ZP_06135741.1| conserved hypothetical protein [Neisseria gonorrhoeae PID18]
gi|291043577|ref|ZP_06569293.1| ribosomal RNA large subunit methyltransferase N [Neisseria
gonorrhoeae DGI2]
gi|268585705|gb|EEZ50381.1| conserved hypothetical protein [Neisseria gonorrhoeae PID18]
gi|291012040|gb|EFE04029.1| ribosomal RNA large subunit methyltransferase N [Neisseria
gonorrhoeae DGI2]
Length = 364
Score = 196 bits (498), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 129/359 (35%), Positives = 193/359 (53%), Gaps = 37/359 (10%)
Query: 18 FEKAGIKQHFIPL---------IWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTL 68
++ G+ +HF + + +++ ++ +DE L + L + L
Sbjct: 8 YDLQGLTRHFADMGEKPFRAKQVMRWMHQSGAQNFDEMTDLAKSLRHKLNEQASIEIPKL 67
Query: 69 HSVVDSSDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCK 128
+SSD T K L+ + G VE V + P R TLCISSQVGC
Sbjct: 68 MMSQESSDG-TRKWLLDVGTGNGVETVFI--------------PESDRGTLCISSQVGCA 112
Query: 129 MGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN--------IRNVVFMGMGEPLNNYAA 180
+ C FC+TG GF NL++ EI+ QL A++ I NVV MGMGEP+ N+
Sbjct: 113 LECTFCSTGRQGFNRNLTAAEIIGQLWWANKAMGVTPKNERVISNVVMMGMGEPMANFDN 172
Query: 181 LVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIM 239
+V A+ IM + +S +R+TVST G+V +++ +P + LAVSLHA +VR QI+
Sbjct: 173 VVTALSIMLNDHGYGLSRRRVTVSTSGMVPQMDRLRDVMP-VALAVSLHASNDEVRNQIV 231
Query: 240 PAARAFPLEKLMNALKEYQ-KNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNL 298
P + +PL++LM A + Y K + I EY+MLDGVND+ QHA++L +L++ NL
Sbjct: 232 PLNKKYPLKELMAACQRYLVKAPRDFITFEYVMLDGVNDKAQHAYELIELVKDVPCKFNL 291
Query: 299 IPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDK 357
IPFNP + S + SS++ + F+ IL+ + + TVRK G DI ACGQL + DK
Sbjct: 292 IPFNPFPN-SGYERSSNENIRIFRDILQQAEFV-VTVRKTRGDDIDAACGQLAGQVQDK 348
>gi|421075446|ref|ZP_15536459.1| Ribosomal RNA large subunit methyltransferase N [Pelosinus
fermentans JBW45]
gi|392526444|gb|EIW49557.1| Ribosomal RNA large subunit methyltransferase N [Pelosinus
fermentans JBW45]
Length = 358
Score = 196 bits (498), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 115/332 (34%), Positives = 182/332 (54%), Gaps = 30/332 (9%)
Query: 31 IWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHSVVDSSDDVTTKLLVKLQNGG 90
+W+++ + E + LL F T H +++D T K L +L +G
Sbjct: 31 VWQWIYRKRVMHFSEMTDVNKECVQLLADHFVIETLKEHCRQEAADG-TVKFLFQLFDGN 89
Query: 91 FVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEI 150
+E V+MR L ++C+++QVGC +GC FCA+G + K +L+SGEI
Sbjct: 90 LIETVLMRNKFGL--------------SVCVTTQVGCNIGCGFCASGLLKKKRDLTSGEI 135
Query: 151 VEQLVHASRL-------SNIRNVVFMGMGEPLNNYAALVEAVRIM---TGLPFQVSPKRI 200
VEQ++ + + +VV MG+GEPL+N+ L++ + I+ GL ++ +RI
Sbjct: 136 VEQIMKVEQYLEQENQEERVSHVVVMGIGEPLDNFVNLIDFLLIIKEHNGLA--IAARRI 193
Query: 201 TVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKN 260
TVST G+ I +F +NLA+SLHAP ++R QIM R F +EK+M A+ Y
Sbjct: 194 TVSTSGLADRIVEFADTNLQVNLAISLHAPNNELRSQIMKINRVFSIEKIMQAVDYYLSK 253
Query: 261 SQQKIFIEYIMLDGVNDEEQHAHQLGKLL--ETFQVVVNLIPFNPIGSVSQFRTSSDDKV 318
+ ++I +EYI+L +ND QHA +L +L+ V VNLIP+NP+ SQ++ S + +
Sbjct: 254 TNRRITLEYILLKDMNDSSQHALELAELIGDRKKSVNVNLIPYNPVDEHSQYQRSELEAM 313
Query: 319 SSFQKILRGSYNIRTTVRKQMGQDISGACGQL 350
+F IL+ + I + R + G DI ACGQL
Sbjct: 314 RTFYDILKKN-GIHCSKRLEHGTDIDAACGQL 344
>gi|227328680|ref|ZP_03832704.1| hypothetical protein PcarcW_15616 [Pectobacterium carotovorum
subsp. carotovorum WPP14]
Length = 418
Score = 196 bits (498), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 107/259 (41%), Positives = 153/259 (59%), Gaps = 16/259 (6%)
Query: 112 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN--------- 162
P R+TLC+SSQVGC + C FC+T GF NL EI+ Q+ A+++
Sbjct: 144 PEEDRATLCVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIGAFKVTGQRP 203
Query: 163 IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 221
I NVV MGMGEPL N +V A+ IM F +S +R+T+ST G+V A++K D+ +
Sbjct: 204 ITNVVMMGMGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDV 262
Query: 222 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDE 278
LA+SLHAP D+R +IMP + + +E ++A++ Y + S Q ++ +EY+MLD +ND
Sbjct: 263 ALAISLHAPTDDIRNEIMPINKKYNIETFLSAVRRYLEKSNANQGRVTVEYVMLDHINDG 322
Query: 279 EQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQ 338
+HAHQL + L+ +NLIP+NP R SS+ +V F K+L Y T VRK
Sbjct: 323 TEHAHQLAECLKDTPCKINLIPWNPFPGAPYGR-SSNSRVDRFSKVLM-EYGFTTIVRKT 380
Query: 339 MGQDISGACGQLVVNLPDK 357
G DI ACGQL + D+
Sbjct: 381 RGDDIDAACGQLAGEVVDR 399
>gi|403667671|ref|ZP_10932971.1| ribosomal RNA large subunit methyltransferase N [Kurthia sp. JC8E]
Length = 370
Score = 196 bits (498), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 114/326 (34%), Positives = 184/326 (56%), Gaps = 27/326 (8%)
Query: 32 WKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHSVV-DSSDDVTTKLLVKLQNGG 90
W YV ++E +L L + F+ STL ++V S D T K L +LQ+G
Sbjct: 54 WLYV--KRVATFEEMSNLSKGLRDKLEADFE--LSTLSTLVKQESKDGTIKFLFQLQDGY 109
Query: 91 FVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEI 150
+E V+MR++ +++C+++QVGC++GC FCA+ G K +L +GEI
Sbjct: 110 SIETVLMRHNYG--------------NSICVTTQVGCRIGCTFCASTLGGLKRHLLAGEI 155
Query: 151 VEQLVHASRL-----SNIRNVVFMGMGEPLNNYAALVEAVRIMT-GLPFQVSPKRITVST 204
VEQ+V R + ++V MG+GEP +NY +++ +RI+ + + ITVST
Sbjct: 156 VEQVVKVQRQLDELDERVSSIVIMGIGEPFDNYDNMMQFLRIINHKQSLNIGARHITVST 215
Query: 205 VGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQK 264
GIV I KF + +N AVSLHAP Q+ R +MP A+A+ L +LM+A++ Y + + ++
Sbjct: 216 SGIVPKIYKFADEELQINFAVSLHAPNQEARQNLMPIAKAYKLNELMDAVRYYTEKTGRR 275
Query: 265 IFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKI 324
+ EY ++ G ND + A++L L++ + VNLIP N + RTS + +F++
Sbjct: 276 VSFEYGLMSGQNDSPEVANELADLIKDIKCHVNLIPINYVPERDYVRTSRSS-IFAFERT 334
Query: 325 LRGSYNIRTTVRKQMGQDISGACGQL 350
L+ I T+R++ G DI+ ACGQL
Sbjct: 335 LKDR-GINVTIRREQGSDIAAACGQL 359
>gi|293365659|ref|ZP_06612368.1| cfr family radical SAM enzyme [Streptococcus oralis ATCC 35037]
gi|291316027|gb|EFE56471.1| cfr family radical SAM enzyme [Streptococcus oralis ATCC 35037]
Length = 349
Score = 196 bits (498), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 119/358 (33%), Positives = 190/358 (53%), Gaps = 30/358 (8%)
Query: 22 GIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKF--KPLTSTLHSVVDSSDDVT 79
G K+ IW+++ ++E +L + L +F PL +V S D T
Sbjct: 9 GEKKFRADQIWEWLYRKRVQSFEEMTNLSKDLIAKLNDQFVVNPLK---QRIVQESADGT 65
Query: 80 TKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTM 139
K L +L +G +E V+MR L ++C+++QVGC +GC FCA+G +
Sbjct: 66 VKYLFELPDGMLIETVLMRQHYGL--------------SVCVTTQVGCNIGCTFCASGLI 111
Query: 140 GFKSNLSSGEIVEQLVHASRLSNIR-------NVVFMGMGEPLNNYAALVEAVR-IMTGL 191
+ +L++GEIV Q++ + + R ++V MG+GEP +NY ++ VR I
Sbjct: 112 KKQRDLNNGEIVAQIMLVQKYFDERGQDERVSHIVVMGIGEPFDNYNNVLNFVRTINDDK 171
Query: 192 PFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLM 251
+ + ITVST G+ H I F ++ +NLAVSLHAP ++R IM RAFP+EKL
Sbjct: 172 GMAIGARHITVSTSGLAHKIRDFANEGVQVNLAVSLHAPNNELRSSIMKINRAFPIEKLF 231
Query: 252 NALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVV--VNLIPFNPIGSVSQ 309
A++ Y + + +++ EYIML+ VND + A +L +LL+ + + VNLIP+NP+ Q
Sbjct: 232 AAIEYYIETTNRRVTFEYIMLNEVNDGVEQALELAELLKNIKKLSYVNLIPYNPVSEHDQ 291
Query: 310 FRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDKISAKSTPPVT 367
+ S ++V +F L+ + VR++ G DI ACGQL N + K+ V
Sbjct: 292 YSRSPKERVMAFYDTLKKK-GVNCVVRQEHGTDIDAACGQLRSNTMKRDRQKAVAAVN 348
>gi|126649673|ref|ZP_01721909.1| Radical SAM family enzyme [Bacillus sp. B14905]
gi|126593392|gb|EAZ87337.1| Radical SAM family enzyme [Bacillus sp. B14905]
Length = 380
Score = 196 bits (498), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 111/315 (35%), Positives = 182/315 (57%), Gaps = 25/315 (7%)
Query: 43 WDEFPSLPSAAYSLLRSKFKPLTSTLHSVV-DSSDDVTTKLLVKLQNGGFVEAVIMRYDS 101
++E +L L + F STL +++ S D T K L +LQ+G +E V+MR++
Sbjct: 74 FEEMSNLSKGLRDKLAANFA--LSTLSTIIKQESKDGTIKFLFQLQDGYSIETVLMRHEY 131
Query: 102 SLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRL- 160
+++C+++QVGC++GC FCA+ G K +L +GEIVEQ+V +
Sbjct: 132 G--------------NSVCVTTQVGCRIGCTFCASTLGGLKRHLLAGEIVEQVVKVQQTL 177
Query: 161 ----SNIRNVVFMGMGEPLNNYAALVEAVRIMTGLP-FQVSPKRITVSTVGIVHAINKFH 215
+ ++V MG+GEP +NY A++ ++++ + + ITVST GIV I +F
Sbjct: 178 DEVSERVSHIVIMGIGEPFDNYDAMMNFLKVINHEKGLNIGARHITVSTSGIVPKIYQFA 237
Query: 216 SDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGV 275
+ +N AVSLHAP Q+ R ++MP ARA+ LE+LM A++ Y K + +++ EY ++ G
Sbjct: 238 DEQLQINFAVSLHAPNQEARQKLMPIARAYKLEELMEAVRYYTKKTGRRVSFEYGLMSGE 297
Query: 276 NDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTV 335
ND + A +L L++ + VNLIP N + RTS ++ +F+K L+ + I T+
Sbjct: 298 NDSVEIAEELSALIKGIKCHVNLIPVNYVPERDYVRTSR-SQIFAFEKTLKKN-GINVTI 355
Query: 336 RKQMGQDISGACGQL 350
R++ G DI+ ACGQL
Sbjct: 356 RREQGSDIAAACGQL 370
>gi|417797252|ref|ZP_12444450.1| 23S rRNA m2A2503 methyltransferase [Staphylococcus aureus subsp.
aureus 21305]
gi|334267300|gb|EGL85764.1| 23S rRNA m2A2503 methyltransferase [Staphylococcus aureus subsp.
aureus 21305]
Length = 364
Score = 196 bits (498), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 110/313 (35%), Positives = 174/313 (55%), Gaps = 23/313 (7%)
Query: 44 DEFPSLPSAAYSLLRSKFKPLTSTLHSVVDSSDDVTTKLLVKLQNGGFVEAVIMRYDSSL 103
DE +L LL+ F T T +S D T K L +LQ+G +E V+MR+D
Sbjct: 59 DEMTNLSKDLRQLLKDNFTVTTLTTVVKQESKDG-TIKFLFELQDGYTIETVLMRHDYG- 116
Query: 104 GKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRL--- 160
+++C+++QVGC++GC FCA+ G K NL +GEIV Q++ +
Sbjct: 117 -------------NSVCVTTQVGCRIGCTFCASTLGGLKRNLEAGEIVSQVLTVQKALDA 163
Query: 161 --SNIRNVVFMGMGEPLNNYAALVEAVRIMTGL-PFQVSPKRITVSTVGIVHAINKFHSD 217
+ +V MG+GEP NY +++ +RI+ + + ITVST GI+ I F +
Sbjct: 164 TEERVSQIVIMGIGEPFENYDEMMDFLRIVNDDNSLNIGARHITVSTSGIIPRIYDFADE 223
Query: 218 LPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVND 277
+N AVSLHA +VR ++MP RA+ +EKL+ A++ YQ+ + +++ EY + GVND
Sbjct: 224 DIQINFAVSLHAAKDEVRSRLMPINRAYNVEKLIEAIQYYQEKTNRRVTFEYGLFGGVND 283
Query: 278 EEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRK 337
+ +HA +L L++ VNLIP N + + +T+ +D + F+K L+ I T+R+
Sbjct: 284 QLEHARELAHLIKDLNCHVNLIPVNHVPERNYVKTAKND-IFKFEKELK-RLGINATIRR 341
Query: 338 QMGQDISGACGQL 350
+ G DI ACGQL
Sbjct: 342 EQGSDIDAACGQL 354
>gi|402310179|ref|ZP_10829147.1| 23S rRNA m2A2503 methyltransferase [Eubacterium sp. AS15]
gi|400369421|gb|EJP22421.1| 23S rRNA m2A2503 methyltransferase [Eubacterium sp. AS15]
Length = 345
Score = 196 bits (498), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 121/348 (34%), Positives = 190/348 (54%), Gaps = 27/348 (7%)
Query: 9 FDGGIIRAEFEKAGIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTL 68
F +I FEK KQ + PL++K + +DE ++P + F + +
Sbjct: 13 FQNILIENGFEKYRAKQIY-PLVYKGIKT-----FDEINNIPKNLKDFMLENFVVNSVCI 66
Query: 69 HSVVDSSDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCK 128
+ + S D T K L+KL++G +E V+M+Y L ++CISSQVGC
Sbjct: 67 YEKLQSKKDYTKKYLMKLEDGNIIECVLMKYKFGL--------------SVCISSQVGCL 112
Query: 129 MGCNFCATGTMGFK-SNLSSGEIVEQLVHASRL--SNIRNVVFMGMGEPLNNYAALVEAV 185
MGC FCA+ T+G K +LSSGE++ Q++ S I N+V MG GEP +NY L++
Sbjct: 113 MGCTFCAS-TVGSKVRDLSSGEMIGQILAMSNDVGEKISNIVIMGSGEPFDNYGNLLKFF 171
Query: 186 R-IMTGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARA 244
+M+ + + ITVST G+ I F +NLA+SLH P Q+ R QIMP +R
Sbjct: 172 DLVMSKDTLNIGARHITVSTCGLADKIIDFADRKLQINLAISLHNPNQEKRSQIMPISRK 231
Query: 245 FPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPI 304
F +++LM A++ Y + +++ EY +++ VND E+ A L +L++ +NLIP N
Sbjct: 232 FKIDELMRAVEYYISKTNRRVTYEYALINEVNDSEEDAKLLVQLVKNQLCHINLIPVNST 291
Query: 305 GSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVV 352
S ++ + ++ F IL + I T+R++MG DI+GACGQL +
Sbjct: 292 EH-SNYKKPDNIRIQKFMNILSKN-GINATIRREMGTDINGACGQLRI 337
>gi|414158682|ref|ZP_11414975.1| ribosomal RNA large subunit methyltransferase N [Streptococcus sp.
F0441]
gi|421488597|ref|ZP_15935985.1| 23S rRNA m2A2503 methyltransferase [Streptococcus oralis SK304]
gi|400367814|gb|EJP20829.1| 23S rRNA m2A2503 methyltransferase [Streptococcus oralis SK304]
gi|410869337|gb|EKS17299.1| ribosomal RNA large subunit methyltransferase N [Streptococcus sp.
F0441]
Length = 361
Score = 196 bits (498), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 119/359 (33%), Positives = 191/359 (53%), Gaps = 30/359 (8%)
Query: 20 KAGIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKF--KPLTSTLHSVVDSSDD 77
+ G K+ IW+++ ++E +L + L +F PL +V S D
Sbjct: 19 EQGEKKFRADQIWEWLYRKRVQSFEEMTNLSKDLIAKLNEQFVVNPLK---QRIVQESAD 75
Query: 78 VTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATG 137
T K L +L +G +E V+MR L ++C+++QVGC +GC FCA+G
Sbjct: 76 GTVKYLFELPDGMLIETVLMRQHYGL--------------SVCVTTQVGCNIGCTFCASG 121
Query: 138 TMGFKSNLSSGEIVEQLVHASRLSNIR-------NVVFMGMGEPLNNYAALVEAVR-IMT 189
+ + +L++GEIV Q++ + + R ++V MG+GEP +NY ++ VR I
Sbjct: 122 LIKKQRDLNNGEIVAQIMLVQKYFDERGQDERVSHIVVMGIGEPFDNYNNVLNFVRTIND 181
Query: 190 GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEK 249
+ + ITVST G+ H I F ++ +NLAVSLHAP ++R IM RAFP+EK
Sbjct: 182 DKGMAIGARHITVSTSGLAHKIRDFANEGVQVNLAVSLHAPNNELRSSIMKINRAFPIEK 241
Query: 250 LMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVV--VNLIPFNPIGSV 307
L A++ Y + + +++ EYIML+ VND + A +L +LL+ + + VNLIP+NP+
Sbjct: 242 LFAAIEYYIETTNRRVTFEYIMLNEVNDGVEQALELAELLKNIKKLSYVNLIPYNPVSEH 301
Query: 308 SQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDKISAKSTPPV 366
Q+ S ++V +F L+ + VR++ G DI ACGQL N + K+ V
Sbjct: 302 DQYSRSPKERVMAFYDTLKKK-GVNCVVRQEHGTDIDAACGQLRSNTMKRDRQKAVAAV 359
>gi|242373506|ref|ZP_04819080.1| Fe-S-cluster redox enzyme [Staphylococcus epidermidis M23864:W1]
gi|242348869|gb|EES40471.1| Fe-S-cluster redox enzyme [Staphylococcus epidermidis M23864:W1]
Length = 364
Score = 196 bits (498), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 108/326 (33%), Positives = 179/326 (54%), Gaps = 23/326 (7%)
Query: 31 IWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHSVVDSSDDVTTKLLVKLQNGG 90
I++++ + DE +L +L+ F +T+ V S D T K L +LQ+G
Sbjct: 46 IFEWLYQKRVNSIDEMTNLSKDLRQVLKDNF-AMTTLTTVVKQESKDGTIKFLFELQDGY 104
Query: 91 FVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEI 150
+E V+MR++ +++C+++QVGC++GC FCA+ G K NL +GEI
Sbjct: 105 TIETVLMRHEYG--------------NSVCVTTQVGCRIGCTFCASTLGGLKRNLEAGEI 150
Query: 151 VEQLVHASRL-----SNIRNVVFMGMGEPLNNYAALVEAVRIMTGL-PFQVSPKRITVST 204
V Q++ + + +V MG+GEP NY +++ +RI+ + + ITVST
Sbjct: 151 VSQVLTVQKALDETDERVSQIVIMGIGEPFENYDEMMDFLRIVNDDNSLNIGARHITVST 210
Query: 205 VGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQK 264
GI+ I F + +N AVSLH ++R ++MP RA+ +EKLM A++ YQ+ + ++
Sbjct: 211 SGIIPRIYDFAEEDIQINFAVSLHGAKDEIRSRLMPINRAYNVEKLMEAIQYYQEKTNRR 270
Query: 265 IFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKI 324
+ EY + GVND+ +HA +L L++ VNLIP N + + +T +D + F+K
Sbjct: 271 VTFEYGLFGGVNDQLEHARELAHLIKDLNCHVNLIPVNHVPERNYVKTPRED-IFKFEKE 329
Query: 325 LRGSYNIRTTVRKQMGQDISGACGQL 350
L+ I T+R++ G DI ACGQL
Sbjct: 330 LK-RLGINATIRREQGSDIDAACGQL 354
>gi|340357579|ref|ZP_08680192.1| cfr family radical SAM enzyme [Sporosarcina newyorkensis 2681]
gi|339617155|gb|EGQ21783.1| cfr family radical SAM enzyme [Sporosarcina newyorkensis 2681]
Length = 358
Score = 196 bits (498), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 112/330 (33%), Positives = 178/330 (53%), Gaps = 26/330 (7%)
Query: 31 IWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHSVVDSSDDVTTKLLVKLQNGG 90
+W ++ + +DE ++ LL F + + +V S D T K L K+ +G
Sbjct: 30 VWDWLYKKRVLSFDEMKNISKDTRDLLNEHF-TIQTLEQNVKQVSQDGTVKFLFKMTDGN 88
Query: 91 FVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEI 150
+E V+M++ P G ++C+++QVGC +GC+FCA+G + +L +GEI
Sbjct: 89 LIETVLMKF------------PYG--YSVCVTTQVGCNIGCSFCASGLLRKNRDLDAGEI 134
Query: 151 V-------EQLVHASRLSNIRNVVFMGMGEPLNNYAALVEAVRIMTGLP-FQVSPKRITV 202
V E L + ++V MG+GEP +NY L+ + I+ + + ITV
Sbjct: 135 VGQIMKVQEHLDEKGEDERVSHIVVMGIGEPFDNYTNLMNFLHIVNDQKGLSIGARHITV 194
Query: 203 STVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQ 262
ST G+ I +F + +NLAVSLHAP ++R +IM +AFP+EKLM+A+ Y + +
Sbjct: 195 STSGLTEKIKEFAEENIQINLAVSLHAPNNELRSKIMKINKAFPIEKLMDAINYYLETTN 254
Query: 263 QKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVV--VNLIPFNPIGSVSQFRTSSDDKVSS 320
++I EYI+L VND + A +LG+LL + + VNLIP+NP+ Q++ S + S
Sbjct: 255 RRITFEYILLRDVNDHVKEAEELGRLLADKRHLSYVNLIPYNPVDEHGQYQRSEPQAIKS 314
Query: 321 FQKILRGSYNIRTTVRKQMGQDISGACGQL 350
F + L+ I VR + G DI ACGQL
Sbjct: 315 FYEALKRK-GINCGVRWENGTDIDAACGQL 343
>gi|406915762|gb|EKD54811.1| hypothetical protein ACD_60C00041G0002 [uncultured bacterium]
Length = 381
Score = 196 bits (498), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 118/315 (37%), Positives = 179/315 (56%), Gaps = 31/315 (9%)
Query: 57 LRSKFKPLTSTLHSVV---DSSDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPG 113
LR K + L + ++S D T K +++L +G +E V + P
Sbjct: 59 LREKISAIAEILPPEIAYENTSLDGTHKWVLRLADGNCIETVFI--------------PE 104
Query: 114 GPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASR-LSN--------IR 164
R TLC+SSQVGC + C+FC+TG GF NL++ EI+ QL A R LS +
Sbjct: 105 KTRGTLCVSSQVGCTLNCDFCSTGKQGFNRNLTAHEIIGQLFIAVRSLSKQQGLHDHAVT 164
Query: 165 NVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNL 223
NVV MGMGEPL N+ +V A+ IM + +S +R+T+ST G++ A+ + + + L
Sbjct: 165 NVVMMGMGEPLLNFENVVNAMNIMLDDFGYGLSKRRVTLSTAGVIPAMYELRK-VSDVAL 223
Query: 224 AVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQK-IFIEYIMLDGVNDEEQHA 282
AVSLHAP ++R ++P + +PL++LM A KEY K +++ + +EY+ML G+ND +QHA
Sbjct: 224 AVSLHAPTDELRNVLVPLNKKYPLKELMTACKEYFKEDKRRYVTMEYVMLAGINDSDQHA 283
Query: 283 HQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQD 342
QL +LL+ + VNLIPFNP + + ++ S + F++ L + I RK G
Sbjct: 284 QQLIRLLKGVRAKVNLIPFNPFPNTA-YKRSDQPTIDRFRETLMRA-GINAITRKTRGDA 341
Query: 343 ISGACGQLVVNLPDK 357
I ACGQLV + D+
Sbjct: 342 IDAACGQLVGEVKDR 356
>gi|298372852|ref|ZP_06982842.1| radical SAM enzyme, Cfr family [Bacteroidetes oral taxon 274 str.
F0058]
gi|298275756|gb|EFI17307.1| radical SAM enzyme, Cfr family [Bacteroidetes oral taxon 274 str.
F0058]
Length = 342
Score = 196 bits (498), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 114/340 (33%), Positives = 182/340 (53%), Gaps = 24/340 (7%)
Query: 14 IRAEFEKAGIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHSVVD 73
++ EF + ++ + +++ + + +++ ++ SLL F +S+
Sbjct: 14 LQEEFASLSLPRYTARQVTEWIYKKRSARFEDMTNISKKNLSLLAEHFDT-GRQPYSMAT 72
Query: 74 SSDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNF 133
+S D T K L ++G +E V++ P R TLC+S QVGC+M C F
Sbjct: 73 TSADGTKKYLFSTRHGD-IETVMI--------------PDDDRRTLCVSCQVGCRMSCRF 117
Query: 134 CATGTMGFKSNLSSGEIVEQLVHASRLSNIRNVVFMGMGEPLNNYAALVEAVRIMT---G 190
C TG GF NLS+GEI+ Q++ NI N+VFMGMGEP +N ++ A+ I+T G
Sbjct: 118 CMTGRCGFAGNLSAGEIINQVLSVDEAKNITNIVFMGMGEPFDNLGEVLRAIEILTSEWG 177
Query: 191 LPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKL 250
L + SPKRITVST G+ I F D +LA+SLH P D R ++MP + +E++
Sbjct: 178 LAY--SPKRITVSTSGLRKGIETF-LDNTQCHLAISLHNPFADERAKMMPVEHSDHIEEV 234
Query: 251 MNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQF 310
+ L Y Q+++ EYI+ +G+ND +HA + +LL VNLI F+ + +
Sbjct: 235 VTLLHRYDFAHQRRLSFEYIVFEGINDSVRHAEGIVRLLRGLFCRVNLIRFHEVADLD-L 293
Query: 311 RTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 350
R+ +K+ F+ L + I +T+R+ G+DI ACGQL
Sbjct: 294 RSPDKNKMEHFRDYL-NRHGIISTIRRSRGEDIEAACGQL 332
>gi|269127610|ref|YP_003300980.1| radical SAM enzyme, Cfr family [Thermomonospora curvata DSM 43183]
gi|268312568|gb|ACY98942.1| radical SAM enzyme, Cfr family [Thermomonospora curvata DSM 43183]
Length = 388
Score = 196 bits (498), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 121/350 (34%), Positives = 184/350 (52%), Gaps = 41/350 (11%)
Query: 18 FEKAGIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHSVVDSSDD 77
F + +H+ + ++++P + LP+A L ++ P T +D
Sbjct: 62 FRAQQLSRHY----FTRLVDDPA----QMTDLPAAVREHLAAELLPTLLTEVRALDCDGG 113
Query: 78 VTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATG 137
T K L + +G +E+V+MRY R T+C+SSQ GC M C FCATG
Sbjct: 114 ATRKTLWRAFDGTLIESVLMRYPD--------------RITMCVSSQAGCGMNCPFCATG 159
Query: 138 TMGFKSNLSSGEIVEQLVHASRL----------SNIRNVVFMGMGEPLNNYAALVEAVRI 187
G NLS+GEIVEQ+V +R I N+VFMGMGEPL NY A++ A+R
Sbjct: 160 QAGLTRNLSTGEIVEQVVAGARALARGKIAGGPGRISNIVFMGMGEPLANYKAVLGAIRR 219
Query: 188 MT-----GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAA 242
+T GL +S + +TVSTVG+V AI + + + LAVSLHAP ++R +++P
Sbjct: 220 ITDPAPDGL--GISQRSVTVSTVGLVPAIARLADEGLSVRLAVSLHAPDDELRDELVPVN 277
Query: 243 RAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFN 302
+ + ++++A Y + +++ IEY ++ VND+ A LG+LL+ V VNLIP N
Sbjct: 278 TRWKVREVLDAAWAYADRTGRRVSIEYALIRDVNDQAWRADLLGRLLKGHLVHVNLIPLN 337
Query: 303 PIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVV 352
P S++ S F L+ ++ + TVR G++I GACGQL
Sbjct: 338 PTPG-SKWTASRPRDEREFVARLQ-AHGVPVTVRDTRGREIDGACGQLAA 385
>gi|59801026|ref|YP_207738.1| hypothetical protein NGO0596 [Neisseria gonorrhoeae FA 1090]
gi|194098883|ref|YP_002001947.1| hypothetical protein NGK_1322 [Neisseria gonorrhoeae NCCP11945]
gi|240013924|ref|ZP_04720837.1| hypothetical protein NgonD_04618 [Neisseria gonorrhoeae DGI18]
gi|240016366|ref|ZP_04722906.1| hypothetical protein NgonFA_04214 [Neisseria gonorrhoeae FA6140]
gi|240121493|ref|ZP_04734455.1| hypothetical protein NgonPI_06948 [Neisseria gonorrhoeae PID24-1]
gi|254493940|ref|ZP_05107111.1| conserved hypothetical protein [Neisseria gonorrhoeae 1291]
gi|268594999|ref|ZP_06129166.1| ribosomal RNA large subunit methyltransferase N [Neisseria
gonorrhoeae 35/02]
gi|268596621|ref|ZP_06130788.1| ribosomal RNA large subunit methyltransferase N [Neisseria
gonorrhoeae FA19]
gi|268599227|ref|ZP_06133394.1| conserved hypothetical protein [Neisseria gonorrhoeae MS11]
gi|268603913|ref|ZP_06138080.1| conserved hypothetical protein [Neisseria gonorrhoeae PID1]
gi|268682376|ref|ZP_06149238.1| conserved hypothetical protein [Neisseria gonorrhoeae PID332]
gi|268684534|ref|ZP_06151396.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-92-679]
gi|268686844|ref|ZP_06153706.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-93-1035]
gi|293398890|ref|ZP_06643055.1| cfr family radical SAM enzyme [Neisseria gonorrhoeae F62]
gi|385335912|ref|YP_005889859.1| hypothetical protein NGTW08_1028 [Neisseria gonorrhoeae
TCDC-NG08107]
gi|75356171|sp|Q5F911.1|RLMN_NEIG1 RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|254807190|sp|B4RMG2.1|RLMN_NEIG2 RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|59717921|gb|AAW89326.1| conserved hypothetical protein [Neisseria gonorrhoeae FA 1090]
gi|193934173|gb|ACF29997.1| Conserved hypothetical protein [Neisseria gonorrhoeae NCCP11945]
gi|226512980|gb|EEH62325.1| conserved hypothetical protein [Neisseria gonorrhoeae 1291]
gi|268548388|gb|EEZ43806.1| ribosomal RNA large subunit methyltransferase N [Neisseria
gonorrhoeae 35/02]
gi|268550409|gb|EEZ45428.1| ribosomal RNA large subunit methyltransferase N [Neisseria
gonorrhoeae FA19]
gi|268583358|gb|EEZ48034.1| conserved hypothetical protein [Neisseria gonorrhoeae MS11]
gi|268588044|gb|EEZ52720.1| conserved hypothetical protein [Neisseria gonorrhoeae PID1]
gi|268622660|gb|EEZ55060.1| conserved hypothetical protein [Neisseria gonorrhoeae PID332]
gi|268624818|gb|EEZ57218.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-92-679]
gi|268627128|gb|EEZ59528.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-93-1035]
gi|291610304|gb|EFF39414.1| cfr family radical SAM enzyme [Neisseria gonorrhoeae F62]
gi|317164455|gb|ADV07996.1| hypothetical protein NGTW08_1028 [Neisseria gonorrhoeae
TCDC-NG08107]
Length = 364
Score = 196 bits (497), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 129/359 (35%), Positives = 193/359 (53%), Gaps = 37/359 (10%)
Query: 18 FEKAGIKQHFIPL---------IWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTL 68
++ G+ +HF + + +++ ++ +DE L + L + L
Sbjct: 8 YDLQGLTRHFADMGEKPFRAKQVMRWMHQSGAQNFDEMTDLAKSLRHKLNEQASIEIPKL 67
Query: 69 HSVVDSSDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCK 128
+SSD T K L+ + G VE V + P R TLCISSQVGC
Sbjct: 68 MMSQESSDG-TRKWLLDVGTGNGVETVFI--------------PESDRGTLCISSQVGCA 112
Query: 129 MGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN--------IRNVVFMGMGEPLNNYAA 180
+ C FC+TG GF NL++ EI+ QL A++ I NVV MGMGEP+ N+
Sbjct: 113 LECTFCSTGRQGFNRNLTAAEIIGQLWWANKAMGVTPKNERVISNVVMMGMGEPMANFDN 172
Query: 181 LVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIM 239
+V A+ IM + +S +R+TVST G+V +++ +P + LAVSLHA +VR QI+
Sbjct: 173 VVTALSIMLDDHGYGLSRRRVTVSTSGMVPQMDRLRDVMP-VALAVSLHASNDEVRNQIV 231
Query: 240 PAARAFPLEKLMNALKEYQ-KNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNL 298
P + +PL++LM A + Y K + I EY+MLDGVND+ QHA++L +L++ NL
Sbjct: 232 PLNKKYPLKELMAACQRYLVKAPRDFITFEYVMLDGVNDKAQHAYELIELVKDVPCKFNL 291
Query: 299 IPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDK 357
IPFNP + S + SS++ + F+ IL+ + + TVRK G DI ACGQL + DK
Sbjct: 292 IPFNPFPN-SGYERSSNENIRIFRDILQQAEFV-VTVRKTRGDDIDAACGQLAGQVQDK 348
>gi|403059493|ref|YP_006647710.1| ribosomal RNA large subunit methyltransferase N [Pectobacterium
carotovorum subsp. carotovorum PCC21]
gi|402806819|gb|AFR04457.1| Ribosomal RNA large subunit methyltransferase N [Pectobacterium
carotovorum subsp. carotovorum PCC21]
Length = 418
Score = 196 bits (497), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 107/259 (41%), Positives = 153/259 (59%), Gaps = 16/259 (6%)
Query: 112 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN--------- 162
P R+TLC+SSQVGC + C FC+T GF NL EI+ Q+ A+++
Sbjct: 144 PEEDRATLCVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIGAFKVTGQRP 203
Query: 163 IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 221
I NVV MGMGEPL N +V A+ IM F +S +R+T+ST G+V A++K D+ +
Sbjct: 204 ITNVVMMGMGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDV 262
Query: 222 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDE 278
LA+SLHAP D+R +IMP + + +E ++A++ Y + S Q ++ +EY+MLD +ND
Sbjct: 263 ALAISLHAPTDDIRNEIMPINKKYNIETFLSAVRRYLEKSNANQGRVTVEYVMLDHINDG 322
Query: 279 EQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQ 338
+HAHQL + L+ +NLIP+NP R SS+ +V F K+L Y T VRK
Sbjct: 323 TEHAHQLAECLKDTPCKINLIPWNPFPGAPYGR-SSNSRVDRFSKVLM-EYGFTTIVRKT 380
Query: 339 MGQDISGACGQLVVNLPDK 357
G DI ACGQL + D+
Sbjct: 381 RGDDIDAACGQLAGEVVDR 399
>gi|384082129|ref|ZP_09993304.1| radical SAM protein [gamma proteobacterium HIMB30]
Length = 376
Score = 196 bits (497), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 120/359 (33%), Positives = 198/359 (55%), Gaps = 35/359 (9%)
Query: 14 IRAEFEKAGIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLR--SKFKPLTSTLHSV 71
+ A F G K+ + K++ + ++D+ +L + L+ ++ +P T
Sbjct: 19 MEAFFLSIGEKKFRGAQMVKWIHQQGVTDFDQMTNLSKSLRDQLKDIAEVRPPRVTFQG- 77
Query: 72 VDSSDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGC 131
S+D T K L+++ G VE V + P G R TLC+SSQVGC + C
Sbjct: 78 --DSEDGTRKWLMEVDGGSKVETVYI--------------PEGDRGTLCVSSQVGCSLDC 121
Query: 132 NFCATGTMGFKSNLSSGEIVEQL----------VHASRLSNIRNVVFMGMGEPLNNYAAL 181
+FC+TG GF NL++ EI+ Q+ V S+ ++ NVV MGMGEPL N+ +
Sbjct: 122 SFCSTGKQGFNKNLTAAEIIGQVFLAAKSFGLPVKDSQKRSVTNVVMMGMGEPLLNFEPV 181
Query: 182 VEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMP 240
V+A+ +M + +S +R+T+ST G+V +N+ + + + LAVSLHAP ++R +++P
Sbjct: 182 VDAMSLMLEDQAYGLSKRRVTLSTSGVVPHLNEL-ARVSDVALAVSLHAPNDELRNELVP 240
Query: 241 AARAFPLEKLMNALKEYQK--NSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNL 298
R +P+ L ++++ Y + + + EY ML GVND ++ A +L L +T + +NL
Sbjct: 241 INRKYPIAVLFDSIRNYLDGLSDNRSVTFEYTMLKGVNDSDELARELSTLAKTIRCKINL 300
Query: 299 IPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDK 357
IPFNP +++ SS +++ +FQ+IL ++ TVRK G DI ACGQL + DK
Sbjct: 301 IPFNPFPG-TRYEVSSRNRIYAFQRILLNDGHV-VTVRKTRGDDIDAACGQLAGQVADK 357
>gi|418472168|ref|ZP_13041933.1| ribosomal RNA large subunit methyltransferase N [Streptomyces
coelicoflavus ZG0656]
gi|371547222|gb|EHN75617.1| ribosomal RNA large subunit methyltransferase N [Streptomyces
coelicoflavus ZG0656]
Length = 370
Score = 196 bits (497), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 116/325 (35%), Positives = 175/325 (53%), Gaps = 33/325 (10%)
Query: 44 DEFPSLPSAAYSLLRSKFKPLTSTLHSVVDSSDDVTTKLLVKLQNGGFVEAVIMRYDSSL 103
+++ +P+ + LR P T+ + + T K L KL +G VE+V+MRY
Sbjct: 62 EQWTDIPAGSREGLREALLPELMTVVRHLSTDQGTTRKTLWKLFDGTLVESVLMRYPD-- 119
Query: 104 GKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRL--- 160
R T+CISSQ GC M C FCATG G NLS+ EIV Q+V R
Sbjct: 120 ------------RVTMCISSQAGCGMNCPFCATGQAGLDRNLSTAEIVHQIVDGMRALRD 167
Query: 161 -------SNIRNVVFMGMGEPLNNYAALVEAVRIMT-----GLPFQVSPKRITVSTVGIV 208
+ + N+VFMGMGEPL NY +V A+R +T GL +S + ITVSTVG+V
Sbjct: 168 GEVPGGPARLSNIVFMGMGEPLANYNRVVGAIRRLTDPEPDGL--GLSQRGITVSTVGLV 225
Query: 209 HAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIE 268
AI++F + LA+SLHAP ++R ++P + + ++++A EY S +++ IE
Sbjct: 226 PAIHRFTGEGFKCRLAISLHAPDDELRDTLVPVNTRWQVREVLDAGFEYAAKSGRRLSIE 285
Query: 269 YIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGS 328
Y ++ +ND+ +LG+LL+ V VNLIP NP + +D+ + + I +
Sbjct: 286 YALIRDINDQAWRGDRLGRLLKGRPVHVNLIPLNPTPGSKWTASRPEDEKAFVEAI--AA 343
Query: 329 YNIRTTVRKQMGQDISGACGQLVVN 353
+ + T+R GQ+I GACGQL +
Sbjct: 344 HGVPVTIRDTRGQEIDGACGQLAAS 368
>gi|119897215|ref|YP_932428.1| hypothetical protein azo0924 [Azoarcus sp. BH72]
gi|205829650|sp|A1K3Y6.1|RLMN_AZOSB RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|119669628|emb|CAL93541.1| conserved hypothetical protein [Azoarcus sp. BH72]
Length = 375
Score = 196 bits (497), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 130/338 (38%), Positives = 181/338 (53%), Gaps = 42/338 (12%)
Query: 44 DEFPSLPSAAYSLLRSKFKPLTSTLHSV--VDS-SDDVTTKLLVKLQNGGFVEAVIMRYD 100
D+F + A SL R+K K + V DS S D T K L+ + N VE V +
Sbjct: 42 DDFDQMTDVAKSL-RAKLKEIAVIRPPVPVRDSVSSDGTRKWLLDVGNANAVETVFI--- 97
Query: 101 SSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRL 160
P R TLC+SSQ GC + C FC+TG GF NL++ EI+ QL A++L
Sbjct: 98 -----------PETNRGTLCVSSQAGCALDCAFCSTGKQGFNRNLTAAEIIGQLWLANKL 146
Query: 161 SN-------------------IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRI 200
I NVV MGMGEPL N+ +V A+R+M + +S +R+
Sbjct: 147 LGAARDAAADLEAGEKDNGRIISNVVMMGMGEPLANFDNVVTALRLMLDDHAYGLSRRRV 206
Query: 201 TVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEY-QK 259
TVST GIV AI++ + P + LAVSLHA +R +++P + +PL +LM A + Y ++
Sbjct: 207 TVSTSGIVPAIDRLRDECP-VALAVSLHASNDALRDRLVPINQKYPLRELMAACQRYLER 265
Query: 260 NSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVS 319
+ I EY+MLDGVND+E HA +L L+ NLIPFNP + S F+ S+ +++
Sbjct: 266 APRDFITFEYVMLDGVNDQEAHARELIALVRDVPCKFNLIPFNPFPN-SGFQRSNAERIR 324
Query: 320 SFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDK 357
F IL + I TT RK G D+ ACGQL + DK
Sbjct: 325 RFAGILLDA-GIVTTTRKTRGDDVDAACGQLAGQVQDK 361
>gi|373857269|ref|ZP_09600011.1| radical SAM enzyme, Cfr family [Bacillus sp. 1NLA3E]
gi|372452919|gb|EHP26388.1| radical SAM enzyme, Cfr family [Bacillus sp. 1NLA3E]
Length = 362
Score = 196 bits (497), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 117/351 (33%), Positives = 193/351 (54%), Gaps = 29/351 (8%)
Query: 9 FDGGIIRAEFEKAGIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTL 68
F G ++ E+ G K I+ ++ + ++E +L L F + +TL
Sbjct: 22 FQLGELKDWLEQHGEKAFRAEQIYDWLYKKRASSFEEMSNLSKGLRDKLDEYF--VLTTL 79
Query: 69 HSVVD-SSDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGC 127
+++ +S D T K L ++++G +E V+MR+D +++C+++QVGC
Sbjct: 80 KTIIQQTSADGTIKFLFEIKDGYSIETVLMRHDYG--------------NSVCVTTQVGC 125
Query: 128 KMGCNFCATGTMGFKSNLSSGEIVEQLVHASRL-----SNIRNVVFMGMGEPLNNYAALV 182
++GC FCA+ G K NL +GEIV Q+V + + ++V MG+GEP +NY L+
Sbjct: 126 RIGCTFCASTLGGLKRNLEAGEIVAQVVKVQQALDESEERVDSIVIMGIGEPFDNYDNLL 185
Query: 183 EAVRIMT---GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIM 239
++IM GL + + ITVST GIV I +F + +N A+SLHAP ++R ++M
Sbjct: 186 SFLKIMNHEQGL--NIGARHITVSTSGIVPKIYQFADENMQINFAISLHAPNTELRSRLM 243
Query: 240 PAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLI 299
P RA+ L LM+A++ Y + + ++I EY + GVND +HA +L KL++ + VNLI
Sbjct: 244 PINRAYKLPDLMDAVRYYIEKTGRRISFEYGLFGGVNDTVEHAEELAKLIKGIKCHVNLI 303
Query: 300 PFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 350
P N + RT ++ F+K L+ + I T+R++ G DI ACGQL
Sbjct: 304 PVNYVPERDYVRTPR-SQIFEFEKTLKKN-GINVTIRREHGSDIDAACGQL 352
>gi|387780327|ref|YP_005755125.1| ribosomal RNA large subunit methyltransferase N [Staphylococcus
aureus subsp. aureus LGA251]
gi|344177429|emb|CCC87897.1| Ribosomal RNA large subunit methyltransferase N [Staphylococcus
aureus subsp. aureus LGA251]
Length = 364
Score = 196 bits (497), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 110/313 (35%), Positives = 175/313 (55%), Gaps = 23/313 (7%)
Query: 44 DEFPSLPSAAYSLLRSKFKPLTSTLHSVVDSSDDVTTKLLVKLQNGGFVEAVIMRYDSSL 103
DE +L + LL+ F T T +S D T K L +LQ+G +E V+MR+D
Sbjct: 59 DEMTNLSNDLRQLLKDNFTVTTLTTVVKQESKDG-TIKFLFELQDGYTIETVLMRHDYG- 116
Query: 104 GKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRL--- 160
+++C+++QVGC++GC FCA+ G K NL +GEIV Q++ +
Sbjct: 117 -------------NSVCVTTQVGCRIGCTFCASTLGGLKRNLEAGEIVSQVLTVQKALDA 163
Query: 161 --SNIRNVVFMGMGEPLNNYAALVEAVRIMTGL-PFQVSPKRITVSTVGIVHAINKFHSD 217
+ +V MG+GEP NY +++ +RI+ + + ITVST GI+ I F +
Sbjct: 164 TEERVSQIVIMGIGEPFENYDEMMDFLRIVNDDNSLNIGARHITVSTSGIIPRIYDFADE 223
Query: 218 LPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVND 277
+N AVSLHA +VR ++MP RA+ +EKL+ A++ YQ+ + +++ EY + GVND
Sbjct: 224 DIQINFAVSLHAAKDEVRSRLMPINRAYNVEKLIEAIQYYQEKTNRRVTFEYGLFGGVND 283
Query: 278 EEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRK 337
+ +HA +L L++ VNLIP N + + +T+ +D + F+K L+ I T+R+
Sbjct: 284 QLEHARELAHLIKGLNCHVNLIPVNHVPERNYVKTAKND-IFKFEKELK-RLGINATIRR 341
Query: 338 QMGQDISGACGQL 350
+ G DI ACGQL
Sbjct: 342 EQGSDIDAACGQL 354
>gi|366166731|ref|ZP_09466486.1| ribosomal RNA large subunit methyltransferase N [Acetivibrio
cellulolyticus CD2]
Length = 347
Score = 196 bits (497), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 110/288 (38%), Positives = 171/288 (59%), Gaps = 19/288 (6%)
Query: 74 SSDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNF 133
S D TTK L KL +G VE+V+M+Y+ ++CISSQVGCKMGC F
Sbjct: 74 SKIDGTTKYLFKLIDGNIVESVLMKYEHGF--------------SVCISSQVGCKMGCKF 119
Query: 134 CATGTMGFKSNLSSGEIVEQL--VHASRLSNIRNVVFMGMGEPLNNYAALVEAVRIMTGL 191
CA+ +GF NL+S E+++Q+ + S + NVV MG+GEP +NY LV+ +R++
Sbjct: 120 CASTGVGFLRNLTSAEMLDQVLTIQNDAGSRVGNVVVMGIGEPFDNYDNLVKFIRLINHK 179
Query: 192 P-FQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKL 250
+ + I VST G+V I K + + L++SLHA + R +IMP + + ++KL
Sbjct: 180 DGMNLGARHIAVSTCGLVPEILKLSKENLPITLSISLHATNDEAREKIMPVNKRYSIDKL 239
Query: 251 MNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQF 310
+ A K Y + + ++I EY ++DGVND ++A QL LL+ VNLIP N + + + F
Sbjct: 240 IEACKIYTETTSRRITFEYALIDGVNDLIEYAQQLSNLLKGMLCHVNLIPVNSVTN-TGF 298
Query: 311 RTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDKI 358
+ SS +++ F+++L I TTVR+++G DI ACGQL +L + +
Sbjct: 299 KKSSKERIYKFKEVLE-KRGIETTVRRELGADIDAACGQLRRSLIEAV 345
>gi|357403874|ref|YP_004915798.1| Fe-S-cluster redox protein [Methylomicrobium alcaliphilum 20Z]
gi|351716539|emb|CCE22199.1| putative Fe-S-cluster redox enzyme [Methylomicrobium alcaliphilum
20Z]
Length = 370
Score = 196 bits (497), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 122/359 (33%), Positives = 201/359 (55%), Gaps = 39/359 (10%)
Query: 17 EFEKAGIKQHFIPL---------IWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTS- 66
+F++ G++ F+ + + K+V + ++ + +L A LR++ S
Sbjct: 17 DFDRKGLEAFFVEIGEKPFRATQLLKWVYQEGVEDFSQMSNLSKA----LRTQLAEQCSL 72
Query: 67 -TLHSVVDS-SDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQ 124
T V++ + D T K +++ G +E V + P R TLC+SSQ
Sbjct: 73 DTPEIVLEQIASDGTCKWVLETSCGNRIETVFI--------------PEEGRGTLCVSSQ 118
Query: 125 VGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASR----LSNIRNVVFMGMGEPLNNYAA 180
+GC + C FC+T GF NL++ EI+ QL A + I NVV MGMGEPL N+
Sbjct: 119 IGCALACTFCSTAQQGFNRNLTTAEIIGQLFAAQKRLGSAQKITNVVMMGMGEPLLNFDN 178
Query: 181 LVEAVRIMT-GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIM 239
+V A+ +M + +S +R+T+ST GIV A+ + +++ ++LAVSLHA ++R +++
Sbjct: 179 VVAAMNLMMDDFAYGLSKRRVTISTSGIVPAMYRL-TEVCDVSLAVSLHAVTDELRNELV 237
Query: 240 PAARAFPLEKLMNALKE-YQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNL 298
P + +PL++L+ A ++ ++ +++I EY+MLDG+ND Q A + KLL+T +NL
Sbjct: 238 PINKKYPLKELLAACRDNVIRSPRRRITFEYVMLDGINDSVQDAKAMVKLLKTVPSKINL 297
Query: 299 IPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDK 357
IPFNP + S +R SS D + F+ +L + + TT+RK G DI ACGQLV + DK
Sbjct: 298 IPFNPFPN-SSYRCSSSDAIDRFRAVLHNAGMV-TTIRKTRGDDIDAACGQLVGKVQDK 354
>gi|146312652|ref|YP_001177726.1| hypothetical protein Ent638_3011 [Enterobacter sp. 638]
gi|205829755|sp|A4WD95.1|RLMN_ENT38 RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|145319528|gb|ABP61675.1| 23S rRNA m(2)A-2503 methyltransferase [Enterobacter sp. 638]
Length = 388
Score = 196 bits (497), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 108/259 (41%), Positives = 153/259 (59%), Gaps = 16/259 (6%)
Query: 112 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN--------- 162
P R+TLC+SSQVGC + C FC+T GF NL EI+ Q+ A+++
Sbjct: 114 PEEDRATLCVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVGAAKVTGTRP 173
Query: 163 IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 221
I NVV MGMGEPL N +V A+ IM F +S +R+T+ST G+V A++K D+ +
Sbjct: 174 ITNVVMMGMGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDV 232
Query: 222 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDE 278
LA+SLHAP ++R +I+P + + +E + A++ Y S Q ++ IEY+MLD VNDE
Sbjct: 233 ALAISLHAPNDEIRDEIVPVNKKYNIETFLAAVRRYLAKSNANQGRVTIEYVMLDHVNDE 292
Query: 279 EQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQ 338
HAHQL +LL+ +NLIP+NP R SS+ ++ F K+L Y T VRK
Sbjct: 293 TDHAHQLAELLKDTPCKINLIPWNPFPGAPYGR-SSNSRIDRFSKVLM-DYGFTTIVRKT 350
Query: 339 MGQDISGACGQLVVNLPDK 357
G DI ACGQL ++ D+
Sbjct: 351 RGDDIDAACGQLAGDVIDR 369
>gi|322375441|ref|ZP_08049954.1| radical SAM enzyme, Cfr family [Streptococcus sp. C300]
gi|321279704|gb|EFX56744.1| radical SAM enzyme, Cfr family [Streptococcus sp. C300]
Length = 361
Score = 196 bits (497), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 119/358 (33%), Positives = 190/358 (53%), Gaps = 30/358 (8%)
Query: 22 GIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKF--KPLTSTLHSVVDSSDDVT 79
G K+ IW+++ ++E +L + L +F PL +V S D T
Sbjct: 21 GEKKFRADQIWEWLYRKRVQSFEEMTNLSKDLIAKLNDQFVVNPLK---QRIVQESADGT 77
Query: 80 TKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTM 139
K L +L +G +E V+MR L ++C+++QVGC +GC FCA+G +
Sbjct: 78 VKYLFELPDGMLIETVLMRQHYGL--------------SVCVTTQVGCNIGCTFCASGLI 123
Query: 140 GFKSNLSSGEIVEQLVHASRLSNIR-------NVVFMGMGEPLNNYAALVEAVR-IMTGL 191
+ +L++GEIV Q++ + + R ++V MG+GEP +NY ++ VR I
Sbjct: 124 KKQRDLNNGEIVAQIMLVQKYFDERGQDERVSHIVVMGIGEPFDNYNNVLNFVRTINDDK 183
Query: 192 PFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLM 251
+ + ITVST G+ H I F ++ +NLAVSLHAP ++R IM RAFP+EKL
Sbjct: 184 GMAIGARHITVSTSGLAHKIRDFANEGVQVNLAVSLHAPNNELRSSIMKINRAFPIEKLF 243
Query: 252 NALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVV--VNLIPFNPIGSVSQ 309
A++ Y + + +++ EYIML+ VND + A +L +LL+ + + VNLIP+NP+ Q
Sbjct: 244 AAIEYYIEKTNRRVTFEYIMLNEVNDGVEQALELAELLKNIKKLSYVNLIPYNPVSEHDQ 303
Query: 310 FRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDKISAKSTPPVT 367
+ S ++V +F L+ + VR++ G DI ACGQL N + K+ V
Sbjct: 304 YSRSPKERVMAFYDTLKKK-GVNCVVRQEHGTDIDAACGQLRSNTMKRDRQKAVAAVN 360
>gi|374262913|ref|ZP_09621473.1| radical SAM protein [Legionella drancourtii LLAP12]
gi|363536729|gb|EHL30163.1| radical SAM protein [Legionella drancourtii LLAP12]
Length = 378
Score = 196 bits (497), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 119/299 (39%), Positives = 168/299 (56%), Gaps = 34/299 (11%)
Query: 75 SDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFC 134
S D T K L+KL G +E V + P R TLC+SSQVGC + C+FC
Sbjct: 76 SSDGTHKWLLKLDCGNCIETVFI--------------PEANRGTLCVSSQVGCALNCSFC 121
Query: 135 ATGTMGFKSNLSSGEIVEQL------------VHASRLSNIRNVVFMGMGEPLNNYAALV 182
+T GF NLS+ EI+ Q+ VH RL+ NVV MGMGEPL N+ +V
Sbjct: 122 STAKQGFNRNLSTAEIIGQVWLAVRELSTNQGVHDKRLT---NVVMMGMGEPLLNFDNVV 178
Query: 183 EAVRIMT-GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPA 241
A+ IM + +S +R+T+ST G++ + + P + LAVSLHAP ++R +++P
Sbjct: 179 SAMNIMMDDFAYGLSKRRVTLSTSGVLPDLERLRQVSP-VALAVSLHAPNDELRNELVPI 237
Query: 242 ARAFPLEKLMNALKEYQKNS-QQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIP 300
+ +PL +LM K Y K+ ++K+ EY+ML GVND+ +HA QL KLL VNLIP
Sbjct: 238 NKKYPLAQLMALCKIYFKDEPRRKVTFEYVMLKGVNDQPEHATQLIKLLRDVPAKVNLIP 297
Query: 301 FNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDKIS 359
FNP ++Q++ SS + +F+ L + I T RK G DI ACGQL + D+ S
Sbjct: 298 FNPF-PMTQYQRSSQAAIDAFRDKLIAN-GINTITRKTRGDDIDAACGQLAGEVKDRTS 354
>gi|319649619|ref|ZP_08003775.1| hypothetical protein HMPREF1013_00379 [Bacillus sp. 2_A_57_CT2]
gi|317398781|gb|EFV79463.1| hypothetical protein HMPREF1013_00379 [Bacillus sp. 2_A_57_CT2]
Length = 361
Score = 196 bits (497), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 107/314 (34%), Positives = 178/314 (56%), Gaps = 23/314 (7%)
Query: 43 WDEFPSLPSAAYSLLRSKFKPLTSTLHSVVDSSDDVTTKLLVKLQNGGFVEAVIMRYDSS 102
+++ +L L + F LT+ + S D T K L +L +G +E V+MR+D
Sbjct: 55 FEDMTNLSKGLRDTLSANF-SLTTLKTIIQQESADGTIKFLFELHDGYSIETVLMRHDYG 113
Query: 103 LGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRL-- 160
+++C+++QVGC++GC FCA+ G K NL +GEIV Q+V +
Sbjct: 114 --------------NSVCVTTQVGCRIGCTFCASTLGGLKRNLEAGEIVAQVVKVQQALD 159
Query: 161 ---SNIRNVVFMGMGEPLNNYAALVEAVRIMT-GLPFQVSPKRITVSTVGIVHAINKFHS 216
+ +VV MG+GEP +NY +++ ++I+ + + ITVST GI+ I KF
Sbjct: 160 ETDERVSSVVIMGIGEPFDNYDSMLSFLKIINHDKGLNIGARHITVSTSGIIPKIYKFAD 219
Query: 217 DLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVN 276
+ +N A+SLHAP ++R ++MP RA+ L LM++++ Y + +++ EY + GVN
Sbjct: 220 ENMQINFAISLHAPNTEIRSRLMPINRAYKLPDLMDSIRYYINKTGRRVSFEYGLFGGVN 279
Query: 277 DEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVR 336
D+ +HA +L KL++ + VNLIP N + RT D++ +F+K L+ ++ I T+R
Sbjct: 280 DQVEHAEELAKLIKNVKCHVNLIPVNYVPERDYVRTPK-DQIFAFEKTLK-NHGINVTIR 337
Query: 337 KQMGQDISGACGQL 350
++ G DI ACGQL
Sbjct: 338 REHGHDIDAACGQL 351
>gi|297182513|gb|ADI18675.1| predicted Fe-S cluster redox enzyme [uncultured Acidobacteria
bacterium HF4000_26D02]
Length = 384
Score = 196 bits (497), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 120/341 (35%), Positives = 179/341 (52%), Gaps = 22/341 (6%)
Query: 22 GIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHSVVDSSDDVTTK 81
G+++ I++++ +D L L + T + + SSD T K
Sbjct: 49 GVERFHARQIYRWIYRRGLERFDRMTDLSLPVREQLEAALTITTPAVRTREQSSDG-TQK 107
Query: 82 LLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGF 141
LV L +G +E+V + P P T C+S+QVGC M C FC TG MG
Sbjct: 108 FLVTLADGRTIESVFI--------------PDTPAMTFCVSTQVGCAMRCGFCLTGQMGL 153
Query: 142 KSNLSSGEIVEQLVHASR---LSNIR-NVVFMGMGEPLNNYAALVEAVRIMTG-LPFQVS 196
NLS+GEI Q+ +R L + R N+V MGMGEPL+NY A ++A+RI+ ++
Sbjct: 154 VRNLSAGEIAGQVRVLARELELQDRRFNIVLMGMGEPLHNYDATMKALRILAAPAGLALT 213
Query: 197 PKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKE 256
P+R+T+ST+GI+ A+ + + NLA+SLHA +R +++P +R L L +
Sbjct: 214 PRRVTLSTIGILPALERLAHEPWLPNLAISLHATTDRLRHELIPTSRTQRLGDLAAVCRR 273
Query: 257 YQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDD 316
+ + +I EY++L GVND E A +L KLL + VNLIP N + F SD
Sbjct: 274 FPVKHRDRITFEYVLLAGVNDTEADATRLPKLLRGLRAKVNLIPLNEAPGIP-FSRPSDR 332
Query: 317 KVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDK 357
+V F + L S +R +VRK G+DI ACGQL+V P +
Sbjct: 333 RVDWFARSL-ASAGLRVSVRKSRGRDIRAACGQLIVEGPRR 372
>gi|451944493|ref|YP_007465129.1| ribosomal RNA large subunit methyltransferase N [Corynebacterium
halotolerans YIM 70093 = DSM 44683]
gi|451903880|gb|AGF72767.1| ribosomal RNA large subunit methyltransferase N [Corynebacterium
halotolerans YIM 70093 = DSM 44683]
Length = 365
Score = 196 bits (497), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 123/319 (38%), Positives = 176/319 (55%), Gaps = 33/319 (10%)
Query: 49 LPSAAYSLLRSKFKPLTSTLHSVVDSSDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNG 108
LP+ A + + P T V D+ + T+K L +L +G +E+V+MRY
Sbjct: 64 LPADARAKVADALFPTLMTPVRVFDTDEGDTSKSLWRLHDGTLLESVLMRYPE------- 116
Query: 109 KPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQL------VHA--SRL 160
R+TLCISSQ GC M C FCATG G NLS+ EIV+Q+ +HA SRL
Sbjct: 117 -------RATLCISSQAGCGMACPFCATGQGGLDRNLSTAEIVDQVRAAAATMHAEGSRL 169
Query: 161 SNIRNVVFMGMGEPLNNYAALVEAVRIMTGLP---FQVSPKRITVSTVGIVHAINKFHSD 217
SNI VFMGMGEPL NY +V AVR +T F +S + +TVSTVG+ AI K +
Sbjct: 170 SNI---VFMGMGEPLANYKRVVSAVRQITEPAPKGFGLSQRNVTVSTVGLAPAIRKLADE 226
Query: 218 LPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVND 277
+ LAVSLH P ++R ++P +P+ ++++A + Y + S +++ IEY ++ VND
Sbjct: 227 DMSVTLAVSLHTPDDELRDTLVPVNNRWPVAEVLDAARYYAEKSGRRVSIEYALIRDVND 286
Query: 278 EEQHAHQLGKLLETF---QVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTT 334
++ A LGK L V VNLIP NP S++ + + F + + + +R T
Sbjct: 287 QDWRADLLGKKLHDALGPLVHVNLIPLNPTPG-SKWDAAPKARQDEFVRRV-NAQGVRCT 344
Query: 335 VRKQMGQDISGACGQLVVN 353
VR GQ+I+ ACGQL
Sbjct: 345 VRDTKGQEIAAACGQLAAE 363
>gi|307704572|ref|ZP_07641477.1| UPF0063 protein yfgB [Streptococcus mitis SK597]
gi|307621869|gb|EFO00901.1| UPF0063 protein yfgB [Streptococcus mitis SK597]
Length = 361
Score = 196 bits (497), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 119/359 (33%), Positives = 191/359 (53%), Gaps = 30/359 (8%)
Query: 20 KAGIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKF--KPLTSTLHSVVDSSDD 77
+ G K+ IW+++ ++E +L + L +F PL +V S D
Sbjct: 19 EQGEKKFHADQIWEWLYRKRVQSFEEMTNLSKDLIAKLNDQFVVNPLK---QRIVQESAD 75
Query: 78 VTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATG 137
T K L +L +G +E V+MR L ++C+++QVGC +GC FCA+G
Sbjct: 76 GTVKYLFELPDGMLIETVLMRQHYGL--------------SVCVTTQVGCNIGCTFCASG 121
Query: 138 TMGFKSNLSSGEIVEQLVHASRLSNIR-------NVVFMGMGEPLNNYAALVEAVR-IMT 189
+ + +L++GEIV Q++ + + R ++V MG+GEP +NY ++ VR I
Sbjct: 122 LIKKQRDLNNGEIVAQIMLVQKYFDERGQDERVSHIVVMGIGEPFDNYNNVLNFVRTIND 181
Query: 190 GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEK 249
+ + ITVST G+ H I F ++ +NLAVSLHAP ++R IM RAFP+EK
Sbjct: 182 DKGMAIGARHITVSTSGLAHKIRDFANEGVQVNLAVSLHAPNNELRSSIMKINRAFPIEK 241
Query: 250 LMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVV--VNLIPFNPIGSV 307
L A++ Y + + +++ EYIML+ VND + A +L +LL+ + + VNLIP+NP+
Sbjct: 242 LFAAIEYYIETTNRRVTFEYIMLNEVNDGVEQALELAELLKNIKKLSYVNLIPYNPVSEH 301
Query: 308 SQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDKISAKSTPPV 366
Q+ S ++V +F L+ + VR++ G DI ACGQL N + K+ V
Sbjct: 302 DQYSRSPKERVLTFYDTLKKK-GVNCVVRQEHGTDIDAACGQLRSNTMKRDRQKAVAAV 359
>gi|260578946|ref|ZP_05846849.1| Cfr family radical SAM enzyme [Corynebacterium jeikeium ATCC 43734]
gi|258602920|gb|EEW16194.1| Cfr family radical SAM enzyme [Corynebacterium jeikeium ATCC 43734]
Length = 345
Score = 196 bits (497), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 122/323 (37%), Positives = 174/323 (53%), Gaps = 33/323 (10%)
Query: 45 EFPSLPSAAYSLLRSKFKPLTSTLHSVVDSSDDVTTKLLVKLQNGGFVEAVIMRYDSSLG 104
E LP + + ++ P +D+ D T K L +L +G +E+V+MRY
Sbjct: 40 EMTDLPESKRAAVKEALFPELMQPMRNMDADDGETRKTLWRLHDGTMLESVLMRY----- 94
Query: 105 KYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHAS------ 158
PG R+TLCISSQ GC M C FCATG G NLS GE+VEQ A+
Sbjct: 95 -------PG--RATLCISSQAGCGMACPFCATGQGGLDRNLSVGEMVEQARAAASTMQEE 145
Query: 159 --RLSNIRNVVFMGMGEPLNNYAALVEAVRIMTGLP---FQVSPKRITVSTVGIVHAINK 213
RLSNI VFMGMGEPL NY +VE +R ++ F +S + ITVSTVG+ AI K
Sbjct: 146 GGRLSNI---VFMGMGEPLANYKRVVETIRKVSAPAPDGFGISQRNITVSTVGLAPAIRK 202
Query: 214 FHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLD 273
+ + LAVSLH P ++R +++P + +E++++A + Y S +++ IEY ++
Sbjct: 203 LADEEMKVRLAVSLHTPDDELRDELVPVNNRWSVEEVLDAARYYADTSGRRVSIEYALIR 262
Query: 274 GVNDEEQHAHQLGKLLETF---QVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYN 330
+ND+ A LGK L +V VNLIP NP S++ S D+ F + + +
Sbjct: 263 DMNDQPWRADLLGKKLRGALGTKVHVNLIPLNPTPG-SKWDASPKDRQDEFVRRVE-AQG 320
Query: 331 IRTTVRKQMGQDISGACGQLVVN 353
+ TVR GQ+I+ ACGQL
Sbjct: 321 VPCTVRDTKGQEIAAACGQLAAE 343
>gi|392957477|ref|ZP_10323000.1| ribosomal RNA large subunit methyltransferase N [Bacillus
macauensis ZFHKF-1]
gi|391876440|gb|EIT85037.1| ribosomal RNA large subunit methyltransferase N [Bacillus
macauensis ZFHKF-1]
Length = 361
Score = 196 bits (497), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 111/330 (33%), Positives = 181/330 (54%), Gaps = 31/330 (9%)
Query: 31 IWKYVIENPNCEWDEFPSLPSAAYSLLRSKF--KPLTSTLHSVVDSSDDVTTKLLVKLQN 88
I+ ++ E +++ +LP + + F +P+ S D T K L +LQ+
Sbjct: 43 IFDWLYEKRVTSFEDMSNLPKGLREKMAASFHIEPMKEVTRQ---ESSDGTIKFLFELQD 99
Query: 89 GGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSG 148
G +E V+MR+D +++C+++QVGC++GC FCA+ G K NL +G
Sbjct: 100 GYSIETVLMRHDYG--------------NSVCVTTQVGCRLGCTFCASTLGGLKRNLHAG 145
Query: 149 EIVEQLVHASRL-----SNIRNVVFMGMGEPLNNYAALVEAVRIMT---GLPFQVSPKRI 200
EIV Q++ R + +VV MG+GEP +NY L+ +RI+ GL + + I
Sbjct: 146 EIVAQVLQVQRALDETEERVDSVVIMGIGEPFDNYEGLMTFLRIINHDQGL--NIGARHI 203
Query: 201 TVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKN 260
TVST GIV I KF + +N AVSLHAP ++R ++MP R +P+ +LM++++ Y +
Sbjct: 204 TVSTSGIVPYIYKFADEGLQINFAVSLHAPNAEIRSKLMPVNRLYPMNELMDSIRYYTQK 263
Query: 261 SQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSS 320
+ +++ EY + GVND+ +HA +L L+++ + VNLIP N + RT ++
Sbjct: 264 TGRRVSFEYGLFGGVNDQVEHAEELATLIKSVKCHVNLIPVNYVPERDYVRTPK-KQIFK 322
Query: 321 FQKILRGSYNIRTTVRKQMGQDISGACGQL 350
F L+ + TVR++ G DI ACGQL
Sbjct: 323 FLDTLK-KRGVNATVRREQGHDIDAACGQL 351
>gi|315640014|ref|ZP_07895140.1| cfr family radical SAM enzyme [Enterococcus italicus DSM 15952]
gi|315484223|gb|EFU74693.1| cfr family radical SAM enzyme [Enterococcus italicus DSM 15952]
Length = 359
Score = 196 bits (497), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 116/342 (33%), Positives = 183/342 (53%), Gaps = 28/342 (8%)
Query: 20 KAGIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHSVV-DSSDDV 78
+ G K+ +W+++ + + + +L L F + + LH VV + D
Sbjct: 25 EQGEKKFRATQLWEWLYQKRVQSFTQMTNLSKGFIEKLDETF--IINPLHQVVVQEAQDG 82
Query: 79 TTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGT 138
T K L +L + +E V+M + L ++C+++QVGC +GC FCA+G
Sbjct: 83 TVKYLFQLPDNHMIETVMMTQEYGL--------------SVCVTTQVGCNIGCTFCASGI 128
Query: 139 MGFKSNLSSGEIVEQLVHASRL-------SNIRNVVFMGMGEPLNNYAALVEAVRIMTGL 191
+ + +L++GEIV Q++ S + ++V MG+GEP +NY ++ + I+
Sbjct: 129 LKKQRDLTAGEIVAQIMLVQHYLDDKNEGSRVSHIVVMGIGEPFDNYQNVMNFLTIVNDA 188
Query: 192 P-FQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKL 250
+ + ITVST G+V I +F + +NLA+SLHAP DVR IM R FP+EKL
Sbjct: 189 KGLAIGARHITVSTSGLVPKIREFAENGLQVNLAISLHAPNNDVRTSIMRINRTFPIEKL 248
Query: 251 MNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQ--VVVNLIPFNPIGSVS 308
M+A+ Y + + ++I EYIML VND +HA QL LL+ + VNLIP+NP+
Sbjct: 249 MDAVDYYLEKTNRRITFEYIMLSHVNDRVEHAQQLADLLKDKKKLTYVNLIPYNPVSEHD 308
Query: 309 QFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 350
Q+ SS + V F +L+ + I +RK+ G DI ACGQL
Sbjct: 309 QYARSSRNDVMKFYDVLKKN-GINCVIRKEYGTDIDAACGQL 349
>gi|377559577|ref|ZP_09789124.1| ribosomal RNA large subunit methyltransferase N [Gordonia otitidis
NBRC 100426]
gi|377523247|dbj|GAB34289.1| ribosomal RNA large subunit methyltransferase N [Gordonia otitidis
NBRC 100426]
Length = 364
Score = 196 bits (497), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 127/362 (35%), Positives = 184/362 (50%), Gaps = 35/362 (9%)
Query: 9 FDGGIIRAEFEKAGIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKP--LTS 66
D RA + G+ + + + N + +E LP++A + P LT
Sbjct: 17 LDADGRRAVISELGLPKFRADQLARQYYSRLNGDVEEMTDLPASARPAVAQALFPQLLTP 76
Query: 67 TLHSVVDSSDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVG 126
H D D T K L +L +G +E+V+MRY R+TLCISSQ G
Sbjct: 77 VRHIACD--DGSTRKTLWRLHDGTLLESVLMRYTD--------------RNTLCISSQAG 120
Query: 127 CKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRL---------SNIRNVVFMGMGEPLNN 177
C M C FCATG G NLS+GEIV+Q+ A+R + NVVFMGMGEPL N
Sbjct: 121 CGMACPFCATGQGGLDRNLSTGEIVDQVRVAARALRDGEFGDAGRLSNVVFMGMGEPLAN 180
Query: 178 YAALVEAVRIMTGLP---FQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDV 234
Y +V AVR +T +S + +TVSTVG+ AI + + + LAVSLH P ++
Sbjct: 181 YKRVVSAVRQITAPSPEGLGISARSVTVSTVGLAPAIRRLADEGLSVTLAVSLHTPDDEL 240
Query: 235 RCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETF-- 292
R ++P + ++++++A + Y + +++ IEY ++ VND+ A LGK L
Sbjct: 241 RDTLVPVNNRWSVQEVLDAARYYADTTGRRVSIEYALIRDVNDQPWRADMLGKKLHKALG 300
Query: 293 -QVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLV 351
+V VNLIP NP SQ+ S D F + +R + + TVR GQ+I+ ACGQL
Sbjct: 301 SRVHVNLIPLNPTPG-SQWDASPKDVEREFVRRVR-AQGVSCTVRDTRGQEIAAACGQLA 358
Query: 352 VN 353
Sbjct: 359 AE 360
>gi|332522196|ref|ZP_08398448.1| 23S rRNA m2A2503 methyltransferase [Streptococcus porcinus str.
Jelinkova 176]
gi|332313460|gb|EGJ26445.1| 23S rRNA m2A2503 methyltransferase [Streptococcus porcinus str.
Jelinkova 176]
Length = 360
Score = 196 bits (497), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 120/357 (33%), Positives = 193/357 (54%), Gaps = 30/357 (8%)
Query: 22 GIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHSVVDSSDDVTTK 81
G K+ IW ++ + ++E ++ SLL +F L +V S D T K
Sbjct: 21 GQKRFRATQIWDWLYKKRVQSFEEMTNISKDFISLLNEQF-CLNPLKQRIVQESADGTVK 79
Query: 82 LLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGF 141
L +L +G +E V+MR ++ G ++C+++QVGC +GC FCA+G +
Sbjct: 80 YLFELPDGMLIETVLMR------QHYG--------HSVCVTTQVGCNIGCTFCASGLIKK 125
Query: 142 KSNLSSGEIVEQLVHASRLSNIR-------NVVFMGMGEPLNNYAALVEAVRIMT---GL 191
+ +L+SGEI Q++ + + R +VV MG+GEP +NY ++ +R + GL
Sbjct: 126 QRDLNSGEITAQIMLVQKYFDERGQDERVSHVVVMGIGEPFDNYKNVMTFLRTINDDNGL 185
Query: 192 PFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLM 251
+ + ITVST G+ H I +F ++ +NLAVSLHAP ++R IM R+FPLEKL
Sbjct: 186 A--IGARHITVSTSGLAHKIREFANEGVQVNLAVSLHAPNNELRSSIMRINRSFPLEKLF 243
Query: 252 NALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVV--VNLIPFNPIGSVSQ 309
A++ Y + + +++ EYIML+ VND + A +L L + + + VNLIP+NP+ Q
Sbjct: 244 AAIEYYIETTNRRVTFEYIMLNEVNDGVEQAKELAALTKNIRKLSYVNLIPYNPVSEHDQ 303
Query: 310 FRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDKISAKSTPPV 366
+ S +V +F +L+ + + VR++ G DI ACGQL N K K+ V
Sbjct: 304 YSRSPKARVEAFYDVLKKN-GVNCVVRQEHGTDIDAACGQLRSNTMKKDRQKAVAKV 359
>gi|421277672|ref|ZP_15728490.1| 23S rRNA methyltransferase [Streptococcus mitis SPAR10]
gi|395874403|gb|EJG85487.1| 23S rRNA methyltransferase [Streptococcus mitis SPAR10]
Length = 361
Score = 196 bits (497), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 118/359 (32%), Positives = 192/359 (53%), Gaps = 30/359 (8%)
Query: 20 KAGIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKF--KPLTSTLHSVVDSSDD 77
+ G K+ IW+++ ++E +L + L +F PL +V S D
Sbjct: 19 EQGEKKFRADQIWEWLYRKRVQTFEEMTNLSKDLIAKLNEQFVVNPLK---QRIVQESAD 75
Query: 78 VTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATG 137
T K L +L +G +E V+MR L ++C+++QVGC +GC FCA+G
Sbjct: 76 GTVKYLFELPDGMLIETVLMRQHYGL--------------SVCVTTQVGCNIGCTFCASG 121
Query: 138 TMGFKSNLSSGEIVEQLVHASRLSNIR-------NVVFMGMGEPLNNYAALVEAVR-IMT 189
+ + +L++GEIV Q++ + + R ++V MG+GEP +NY ++ +R I
Sbjct: 122 LIKKQRDLNNGEIVAQIMLVQKYFDERGQDERVSHIVVMGIGEPFDNYNNVLNFIRTIND 181
Query: 190 GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEK 249
+ + ITVST G+ H I +F ++ +NLAVSLHAP ++R IM RAFP+EK
Sbjct: 182 DKGMAIGARHITVSTSGLAHKIREFANEGVQVNLAVSLHAPNNELRSSIMKINRAFPIEK 241
Query: 250 LMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVV--VNLIPFNPIGSV 307
L A++ Y + + +++ EYIML+ VND + A +L +LL+ + + VNLIP+NP+
Sbjct: 242 LFAAIEYYIETTNRRVTFEYIMLNEVNDGVEQALELAELLKNIKKLSYVNLIPYNPVSEH 301
Query: 308 SQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDKISAKSTPPV 366
Q+ S ++V +F L+ + VR++ G DI ACGQL N + K+ V
Sbjct: 302 DQYSRSPKERVMAFYDTLKKK-GVNCVVRQEHGTDIDAACGQLRSNTMKRDRQKAVAEV 359
>gi|21223996|ref|NP_629775.1| ribosomal RNA large subunit methyltransferase N [Streptomyces
coelicolor A3(2)]
gi|289768821|ref|ZP_06528199.1| cfr family radical SAM enzyme [Streptomyces lividans TK24]
gi|81556653|sp|O86754.1|RLMN_STRCO RecName: Full=Probable dual-specificity RNA methyltransferase RlmN;
AltName: Full=23S rRNA
(adenine(2503)-C(2))-methyltransferase; AltName:
Full=23S rRNA m2A2503 methyltransferase; AltName:
Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=tRNA (adenine(37)-C(2))-methyltransferase;
AltName: Full=tRNA m2A37 methyltransferase
gi|3319741|emb|CAA19907.1| conserved hypothetical protein SC6A9.22c [Streptomyces coelicolor
A3(2)]
gi|289699020|gb|EFD66449.1| cfr family radical SAM enzyme [Streptomyces lividans TK24]
Length = 368
Score = 196 bits (497), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 116/325 (35%), Positives = 174/325 (53%), Gaps = 33/325 (10%)
Query: 44 DEFPSLPSAAYSLLRSKFKPLTSTLHSVVDSSDDVTTKLLVKLQNGGFVEAVIMRYDSSL 103
+++ +P+ + LR P T+ + + T K L KL +G VE+V+MRY
Sbjct: 60 EQWTDIPAGSREGLREALLPELMTVVRHLSTDQGTTRKTLWKLFDGTLVESVLMRYPD-- 117
Query: 104 GKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRL--- 160
R T+CISSQ GC M C FCATG G NLS+ EIV Q+V R
Sbjct: 118 ------------RVTMCISSQAGCGMNCPFCATGQAGLDRNLSTAEIVHQIVDGMRALRD 165
Query: 161 -------SNIRNVVFMGMGEPLNNYAALVEAVRIMT-----GLPFQVSPKRITVSTVGIV 208
+ + N+VFMGMGEPL NY +V A+R +T GL +S + ITVSTVG+V
Sbjct: 166 GEVPGGPARLSNIVFMGMGEPLANYNRVVGAIRRLTDPEPDGL--GLSQRGITVSTVGLV 223
Query: 209 HAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIE 268
AI++F + LA+SLHAP ++R ++P + + ++++A EY S +++ IE
Sbjct: 224 PAIHRFTGEGFKCRLAISLHAPDDELRDTLVPVNTRWKVREVLDAGFEYAAKSGRRLSIE 283
Query: 269 YIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGS 328
Y ++ +ND+ +LG+LL V VNLIP NP + +D+ + + I +
Sbjct: 284 YALIRDINDQAWRGDRLGRLLRGRPVHVNLIPLNPTPGSKWTASRPEDEKAFVEAI--AA 341
Query: 329 YNIRTTVRKQMGQDISGACGQLVVN 353
+ + T+R GQ+I GACGQL +
Sbjct: 342 HGVPVTIRDTRGQEIDGACGQLAAS 366
>gi|406576653|ref|ZP_11052280.1| ribosomal RNA large subunit methyltransferase N [Streptococcus sp.
GMD6S]
gi|419817895|ref|ZP_14342028.1| ribosomal RNA large subunit methyltransferase N [Streptococcus sp.
GMD4S]
gi|404461200|gb|EKA07177.1| ribosomal RNA large subunit methyltransferase N [Streptococcus sp.
GMD6S]
gi|404465322|gb|EKA10784.1| ribosomal RNA large subunit methyltransferase N [Streptococcus sp.
GMD4S]
Length = 361
Score = 196 bits (497), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 119/358 (33%), Positives = 190/358 (53%), Gaps = 30/358 (8%)
Query: 22 GIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKF--KPLTSTLHSVVDSSDDVT 79
G K+ IW+++ ++E +L + L +F PL +V S D T
Sbjct: 21 GEKKFRADQIWEWLYRKRVQSFEEMTNLSKDLIAKLNEQFVVNPLK---QRIVQESADGT 77
Query: 80 TKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTM 139
K L +L +G +E V+MR L ++C+++QVGC +GC FCA+G +
Sbjct: 78 VKYLFELPDGMLIETVLMRQHYGL--------------SVCVTTQVGCNIGCTFCASGLI 123
Query: 140 GFKSNLSSGEIVEQLVHASRLSNIR-------NVVFMGMGEPLNNYAALVEAVR-IMTGL 191
+ +L++GEIV Q++ + + R ++V MG+GEP +NY ++ VR I
Sbjct: 124 KKQRDLNNGEIVAQIMLVQKYFDERGQDERVSHIVVMGIGEPFDNYNNVLNFVRTINDDK 183
Query: 192 PFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLM 251
+ + ITVST G+ H I F ++ +NLAVSLHAP ++R IM RAFP+EKL
Sbjct: 184 GMAIGARHITVSTSGLAHKIRDFANEGVQVNLAVSLHAPNNELRSSIMKINRAFPIEKLF 243
Query: 252 NALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVV--VNLIPFNPIGSVSQ 309
A++ Y + + +++ EYIML+ VND + A +L +LL+ + + VNLIP+NP+ Q
Sbjct: 244 AAIEYYIETTNRRVTFEYIMLNEVNDGVEQALELAELLKNIKKLSYVNLIPYNPVSEHDQ 303
Query: 310 FRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDKISAKSTPPVT 367
+ S ++V +F L+ + VR++ G DI ACGQL N + K+ V
Sbjct: 304 YSRSPKERVMAFYDTLKKK-GVNCVVRQEHGTDIDAACGQLRSNTMKRDRQKAVAAVN 360
>gi|322388131|ref|ZP_08061736.1| cfr family radical SAM enzyme [Streptococcus infantis ATCC 700779]
gi|419842764|ref|ZP_14366100.1| 23S rRNA m2A2503 methyltransferase [Streptococcus infantis ATCC
700779]
gi|321141038|gb|EFX36538.1| cfr family radical SAM enzyme [Streptococcus infantis ATCC 700779]
gi|385703520|gb|EIG40634.1| 23S rRNA m2A2503 methyltransferase [Streptococcus infantis ATCC
700779]
Length = 361
Score = 196 bits (497), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 118/359 (32%), Positives = 192/359 (53%), Gaps = 30/359 (8%)
Query: 20 KAGIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKF--KPLTSTLHSVVDSSDD 77
+ G K+ IW+++ ++E +L + L +F PL +V S D
Sbjct: 19 EQGEKKFRADQIWEWLYRKRVQTFEEMTNLSKDLIAKLNEQFVVNPLK---QRIVQESAD 75
Query: 78 VTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATG 137
T K L +L +G +E V+MR L ++C+++QVGC +GC FCA+G
Sbjct: 76 GTVKYLFELPDGMLIETVLMRQHYGL--------------SVCVTTQVGCNIGCTFCASG 121
Query: 138 TMGFKSNLSSGEIVEQLVHASRLSNIR-------NVVFMGMGEPLNNYAALVEAVR-IMT 189
+ + +L++GEIV Q++ + + R ++V MG+GEP +NY ++ +R I
Sbjct: 122 LIKKQRDLNNGEIVAQIMLVQKYFDERGQDERVSHIVVMGIGEPFDNYNNVLNFIRTIND 181
Query: 190 GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEK 249
+ + ITVST G+ H I +F ++ +NLAVSLHAP ++R IM RAFP+EK
Sbjct: 182 DKGMAIGARHITVSTSGLAHKIREFANEGVQVNLAVSLHAPNNELRSSIMKINRAFPIEK 241
Query: 250 LMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVV--VNLIPFNPIGSV 307
L A++ Y + + +++ EYIML+ VND + A +L +LL+ + + VNLIP+NP+
Sbjct: 242 LFAAIEYYIETTNRRVTFEYIMLNEVNDGVEQALELAELLKNIKKLSYVNLIPYNPVSEH 301
Query: 308 SQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDKISAKSTPPV 366
Q+ S ++V +F L+ + VR++ G DI ACGQL N + K+ V
Sbjct: 302 DQYSRSPKERVMAFYDTLKKK-GVNCVVRQEHGTDIDAACGQLRSNTMKRDRQKAVAEV 359
>gi|68536246|ref|YP_250951.1| ribosomal RNA large subunit methyltransferase N [Corynebacterium
jeikeium K411]
gi|123650875|sp|Q4JV24.1|RLMN_CORJK RecName: Full=Probable dual-specificity RNA methyltransferase RlmN;
AltName: Full=23S rRNA
(adenine(2503)-C(2))-methyltransferase; AltName:
Full=23S rRNA m2A2503 methyltransferase; AltName:
Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=tRNA (adenine(37)-C(2))-methyltransferase;
AltName: Full=tRNA m2A37 methyltransferase
gi|68263845|emb|CAI37333.1| conserved hypothetical protein [Corynebacterium jeikeium K411]
Length = 365
Score = 196 bits (497), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 122/323 (37%), Positives = 174/323 (53%), Gaps = 33/323 (10%)
Query: 45 EFPSLPSAAYSLLRSKFKPLTSTLHSVVDSSDDVTTKLLVKLQNGGFVEAVIMRYDSSLG 104
E LP + + ++ P +D+ D T K L +L +G +E+V+MRY
Sbjct: 60 EMTDLPESKRAAVKEALFPELMQPMRNMDADDGETRKTLWRLHDGTMLESVLMRY----- 114
Query: 105 KYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHAS------ 158
PG R+TLCISSQ GC M C FCATG G NLS GE+VEQ A+
Sbjct: 115 -------PG--RATLCISSQAGCGMACPFCATGQGGLDRNLSVGEMVEQARAAASTMQEE 165
Query: 159 --RLSNIRNVVFMGMGEPLNNYAALVEAVRIMTGLP---FQVSPKRITVSTVGIVHAINK 213
RLSNI VFMGMGEPL NY +VE +R ++ F +S + ITVSTVG+ AI K
Sbjct: 166 GGRLSNI---VFMGMGEPLANYKRVVETIRKVSAPAPDGFGISQRNITVSTVGLAPAIRK 222
Query: 214 FHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLD 273
+ + LAVSLH P ++R +++P + +E++++A + Y S +++ IEY ++
Sbjct: 223 LADEEMKVRLAVSLHTPDDELRDELVPVNNRWSVEEVLDAARYYADTSGRRVSIEYALIR 282
Query: 274 GVNDEEQHAHQLGKLLETF---QVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYN 330
+ND+ A LGK L +V VNLIP NP S++ S D+ F + + +
Sbjct: 283 DMNDQPWRADLLGKKLRGALGTKVHVNLIPLNPTPG-SKWDASPKDRQDEFVRRVE-AQG 340
Query: 331 IRTTVRKQMGQDISGACGQLVVN 353
+ TVR GQ+I+ ACGQL
Sbjct: 341 VPCTVRDTKGQEIAAACGQLAAE 363
>gi|395771731|ref|ZP_10452246.1| ribosomal RNA large subunit methyltransferase N [Streptomyces
acidiscabies 84-104]
Length = 368
Score = 196 bits (497), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 116/324 (35%), Positives = 174/324 (53%), Gaps = 33/324 (10%)
Query: 45 EFPSLPSAAYSLLRSKFKPLTSTLHSVVDSSDDVTTKLLVKLQNGGFVEAVIMRYDSSLG 104
E+ +P+ + L+ P T+ + + + T K L ++ +G VE+V+MRY
Sbjct: 61 EWTDIPAGSRGKLQEALFPELMTVVRHLSTDEGTTRKTLWRMFDGTLVESVLMRYPD--- 117
Query: 105 KYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRL---- 160
R T+CISSQ GC M C FCATG G NLS+ EIV Q+V R
Sbjct: 118 -----------RVTMCISSQAGCGMNCPFCATGQAGLDRNLSTAEIVHQIVDGMRALRDG 166
Query: 161 ------SNIRNVVFMGMGEPLNNYAALVEAVRIMT-----GLPFQVSPKRITVSTVGIVH 209
+ + N+VFMGMGEPL NY +V A+R +T GL +S + ITVSTVG+V
Sbjct: 167 DVPGGPARLSNIVFMGMGEPLANYKRVVGAIRALTDPNPDGL--GLSQRGITVSTVGLVP 224
Query: 210 AINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEY 269
AI++F + LA+SLHAP ++R ++P + + ++++A EY + S +++ IEY
Sbjct: 225 AIHRFADEGFKCRLAISLHAPDDELRDTLVPVNTRWKVREVLDAGFEYVEKSGRRLSIEY 284
Query: 270 IMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSY 329
++ +ND+ +LG+LL V VNLIP NP + +D+ + + I S+
Sbjct: 285 ALIRDINDQAWRGDRLGRLLRGKPVHVNLIPLNPTPGSKWTASRPEDEKAFVEAI--ASH 342
Query: 330 NIRTTVRKQMGQDISGACGQLVVN 353
+ TVR GQ+I GACGQL
Sbjct: 343 GVPVTVRDTRGQEIDGACGQLAAT 366
>gi|332686368|ref|YP_004456142.1| ribosomal RNA large subunit methyltransferase N [Melissococcus
plutonius ATCC 35311]
gi|332370377|dbj|BAK21333.1| ribosomal RNA large subunit methyltransferase N [Melissococcus
plutonius ATCC 35311]
Length = 357
Score = 196 bits (497), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 117/345 (33%), Positives = 182/345 (52%), Gaps = 30/345 (8%)
Query: 18 FEKAGIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHSVVDSSDD 77
F + G K+ +W+++ +++ +L SLL F + +++ + D
Sbjct: 23 FLENGEKKFRANQVWEWLYIKRVESFEDMTNLSKTLISLLDQHF-VIQVLRQTIIQEAKD 81
Query: 78 VTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATG 137
T K L +L + +E V+MR + L ++C+++QVGC MGC FCA+G
Sbjct: 82 GTVKYLFELPDKNMIETVLMRQEYGL--------------SVCVTTQVGCNMGCTFCASG 127
Query: 138 TMGFKSNLSSGEIVEQLVHASRLSNIR-------NVVFMGMGEPLNNYAALVEAVRIMT- 189
+ NL++GEIV Q++ R + R +VV MG+GEP +NY L++ ++I+
Sbjct: 128 LLKKNRNLTAGEIVAQIMMVQRYFDQRKLGERVSHVVVMGIGEPFDNYEQLMQFIQIIND 187
Query: 190 --GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPL 247
GL + + +TVST G+V I KF +NLA+SLHA +R IM FP+
Sbjct: 188 EKGLA--IGARHLTVSTCGLVPQIKKFAQTGLQVNLAISLHASNNQIRSSIMRINHTFPI 245
Query: 248 EKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQ--VVVNLIPFNPIG 305
EKLM + EY + + +++ EYIML VND +HA +L LL+ + VNLIP+NP+
Sbjct: 246 EKLMQTIDEYIEQTNRRVTFEYIMLQKVNDYPEHAQELADLLKDKKKLAYVNLIPYNPVN 305
Query: 306 SVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 350
Q+ S V F IL+ + I +RK+ G DI ACGQL
Sbjct: 306 EHDQYCRSEKASVLKFYDILKKN-GINCVIRKEHGTDIDAACGQL 349
>gi|15924208|ref|NP_371742.1| ribosomal RNA large subunit methyltransferase N [Staphylococcus
aureus subsp. aureus Mu50]
gi|15926801|ref|NP_374334.1| ribosomal RNA large subunit methyltransferase N [Staphylococcus
aureus subsp. aureus N315]
gi|49483381|ref|YP_040605.1| ribosomal RNA large subunit methyltransferase N [Staphylococcus
aureus subsp. aureus MRSA252]
gi|57651787|ref|YP_186093.1| ribosomal RNA large subunit methyltransferase N [Staphylococcus
aureus subsp. aureus COL]
gi|87160347|ref|YP_493808.1| ribosomal RNA large subunit methyltransferase N [Staphylococcus
aureus subsp. aureus USA300_FPR3757]
gi|88194924|ref|YP_499724.1| ribosomal RNA large subunit methyltransferase N [Staphylococcus
aureus subsp. aureus NCTC 8325]
gi|148267709|ref|YP_001246652.1| ribosomal RNA large subunit methyltransferase N [Staphylococcus
aureus subsp. aureus JH9]
gi|150393767|ref|YP_001316442.1| ribosomal RNA large subunit methyltransferase N [Staphylococcus
aureus subsp. aureus JH1]
gi|151221340|ref|YP_001332162.1| ribosomal RNA large subunit methyltransferase N [Staphylococcus
aureus subsp. aureus str. Newman]
gi|156979539|ref|YP_001441798.1| ribosomal RNA large subunit methyltransferase N [Staphylococcus
aureus subsp. aureus Mu3]
gi|161509390|ref|YP_001575049.1| ribosomal RNA large subunit methyltransferase N [Staphylococcus
aureus subsp. aureus USA300_TCH1516]
gi|221142008|ref|ZP_03566501.1| hypothetical protein SauraJ_10305 [Staphylococcus aureus subsp.
aureus str. JKD6009]
gi|253315576|ref|ZP_04838789.1| hypothetical protein SauraC_05407 [Staphylococcus aureus subsp.
aureus str. CF-Marseille]
gi|253731835|ref|ZP_04866000.1| Fe-S-cluster redox enzyme [Staphylococcus aureus subsp. aureus
USA300_TCH959]
gi|253733544|ref|ZP_04867709.1| Fe-S-cluster redox enzyme [Staphylococcus aureus subsp. aureus
TCH130]
gi|255006005|ref|ZP_05144606.2| hypothetical protein SauraM_06030 [Staphylococcus aureus subsp.
aureus Mu50-omega]
gi|257425271|ref|ZP_05601696.1| cfr family radical SAM enzyme [Staphylococcus aureus subsp. aureus
55/2053]
gi|257427931|ref|ZP_05604329.1| cfr family radical SAM enzyme [Staphylococcus aureus subsp. aureus
65-1322]
gi|257430564|ref|ZP_05606946.1| ribosomal RNA large subunit methyltransferase N [Staphylococcus
aureus subsp. aureus 68-397]
gi|257433325|ref|ZP_05609683.1| ribosomal RNA large subunit methyltransferase N [Staphylococcus
aureus subsp. aureus E1410]
gi|257436167|ref|ZP_05612214.1| cfr family radical SAM enzyme [Staphylococcus aureus subsp. aureus
M876]
gi|257795726|ref|ZP_05644705.1| cfr family radical SAM enzyme [Staphylococcus aureus A9781]
gi|258415950|ref|ZP_05682220.1| ribosomal large subunit methyltransferase N [Staphylococcus aureus
A9763]
gi|258419697|ref|ZP_05682664.1| cfr family radical SAM enzyme [Staphylococcus aureus A9719]
gi|258423739|ref|ZP_05686625.1| cfr family radical SAM enzyme [Staphylococcus aureus A9635]
gi|258438739|ref|ZP_05689892.1| ribosomal RNA large subunit methyltransferase N [Staphylococcus
aureus A9299]
gi|258444555|ref|ZP_05692884.1| ribosomal RNA large subunit methyltransferase N [Staphylococcus
aureus A8115]
gi|258447612|ref|ZP_05695756.1| cfr family radical SAM enzyme [Staphylococcus aureus A6300]
gi|258449454|ref|ZP_05697557.1| cfr family radical SAM enzyme [Staphylococcus aureus A6224]
gi|258452515|ref|ZP_05700521.1| ribosomal RNA large subunit methyltransferase N [Staphylococcus
aureus A5948]
gi|258454833|ref|ZP_05702797.1| ribosomal RNA large subunit methyltransferase N [Staphylococcus
aureus A5937]
gi|262051850|ref|ZP_06024066.1| hypothetical protein SA930_1400 [Staphylococcus aureus 930918-3]
gi|269202833|ref|YP_003282102.1| hypothetical protein SAAV_1190 [Staphylococcus aureus subsp. aureus
ED98]
gi|282892704|ref|ZP_06300939.1| cfr family radical SAM enzyme [Staphylococcus aureus A8117]
gi|282903771|ref|ZP_06311659.1| radical SAM enzyme, Cfr family [Staphylococcus aureus subsp. aureus
C160]
gi|282905535|ref|ZP_06313390.1| radical SAM enzyme Cfr family protein [Staphylococcus aureus subsp.
aureus Btn1260]
gi|282908511|ref|ZP_06316341.1| ribosomal RNA large subunit methyltransferase N [Staphylococcus
aureus subsp. aureus WW2703/97]
gi|282910790|ref|ZP_06318593.1| ribosomal RNA large subunit methyltransferase N [Staphylococcus
aureus subsp. aureus WBG10049]
gi|282913993|ref|ZP_06321780.1| radical SAM enzyme, Cfr family [Staphylococcus aureus subsp. aureus
M899]
gi|282916467|ref|ZP_06324229.1| cfr family radical SAM enzyme [Staphylococcus aureus subsp. aureus
D139]
gi|282918915|ref|ZP_06326650.1| radical SAM enzyme, Cfr family protein [Staphylococcus aureus
subsp. aureus C427]
gi|282920000|ref|ZP_06327729.1| cfr family radical SAM enzyme [Staphylococcus aureus A9765]
gi|282924038|ref|ZP_06331714.1| cfr family radical SAM enzyme [Staphylococcus aureus subsp. aureus
C101]
gi|282927558|ref|ZP_06335174.1| cfr family radical SAM enzyme [Staphylococcus aureus A10102]
gi|283770279|ref|ZP_06343171.1| ribosomal RNA large subunit methyltransferase N [Staphylococcus
aureus subsp. aureus H19]
gi|283957959|ref|ZP_06375410.1| cfr family radical SAM enzyme [Staphylococcus aureus subsp. aureus
A017934/97]
gi|284024142|ref|ZP_06378540.1| ribosomal RNA large subunit methyltransferase N [Staphylococcus
aureus subsp. aureus 132]
gi|293501026|ref|ZP_06666877.1| cfr family radical SAM enzyme [Staphylococcus aureus subsp. aureus
58-424]
gi|293509985|ref|ZP_06668693.1| cfr family radical SAM enzyme [Staphylococcus aureus subsp. aureus
M809]
gi|293526573|ref|ZP_06671258.1| radical SAM enzyme, Cfr family [Staphylococcus aureus subsp. aureus
M1015]
gi|294848211|ref|ZP_06788958.1| cfr family radical SAM enzyme [Staphylococcus aureus A9754]
gi|295407156|ref|ZP_06816957.1| LOW QUALITY PROTEIN: cfr family radical SAM enzyme [Staphylococcus
aureus A8819]
gi|295427703|ref|ZP_06820335.1| cfr family radical SAM enzyme [Staphylococcus aureus subsp. aureus
EMRSA16]
gi|296275239|ref|ZP_06857746.1| ribosomal RNA large subunit methyltransferase N [Staphylococcus
aureus subsp. aureus MR1]
gi|297245958|ref|ZP_06929817.1| cfr family radical SAM enzyme [Staphylococcus aureus A8796]
gi|297591338|ref|ZP_06949976.1| cfr family radical SAM enzyme [Staphylococcus aureus subsp. aureus
MN8]
gi|304381219|ref|ZP_07363872.1| cfr family radical SAM enzyme [Staphylococcus aureus subsp. aureus
ATCC BAA-39]
gi|379014409|ref|YP_005290645.1| ribosomal RNA large subunit methyltransferase N [Staphylococcus
aureus subsp. aureus VC40]
gi|384547462|ref|YP_005736715.1| hypothetical protein SAOV_1221 [Staphylococcus aureus subsp. aureus
ED133]
gi|384549973|ref|YP_005739225.1| Ribosomal RNA large subunit methyltransferase N, Rlmn
[Staphylococcus aureus subsp. aureus JKD6159]
gi|384861812|ref|YP_005744532.1| Ribosomal RNA large subunit methyltransferase N, Rlmn
[Staphylococcus aureus subsp. aureus str. JKD6008]
gi|384864445|ref|YP_005749804.1| radical SAM superfamily protein [Staphylococcus aureus subsp.
aureus ECT-R 2]
gi|384867900|ref|YP_005748096.1| cfr family radical SAM enzyme [Staphylococcus aureus subsp. aureus
TCH60]
gi|384869752|ref|YP_005752466.1| ribosomal RNA large subunit methyltransferase N [Staphylococcus
aureus subsp. aureus T0131]
gi|385781446|ref|YP_005757617.1| 23S rRNA methyltransferase [Staphylococcus aureus subsp. aureus
11819-97]
gi|386728898|ref|YP_006195281.1| radical SAM protein [Staphylococcus aureus subsp. aureus 71193]
gi|387142827|ref|YP_005731220.1| ribosomal RNA large subunit methyltransferase N [Staphylococcus
aureus subsp. aureus TW20]
gi|387150361|ref|YP_005741925.1| Ribosomal RNA large subunit methyltransferase N [Staphylococcus
aureus 04-02981]
gi|387602492|ref|YP_005734013.1| radical SAM enzyme, Cfr family [Staphylococcus aureus subsp. aureus
ST398]
gi|404478557|ref|YP_006709987.1| hypothetical protein C248_1248 [Staphylococcus aureus 08BA02176]
gi|415683806|ref|ZP_11449008.1| possible Fe-S-cluster redox enzyme [Staphylococcus aureus subsp.
aureus CGS00]
gi|415686405|ref|ZP_11450494.1| possible Fe-S-cluster redox enzyme [Staphylococcus aureus subsp.
aureus CGS01]
gi|415691065|ref|ZP_11453304.1| possible Fe-S-cluster redox enzyme [Staphylococcus aureus subsp.
aureus CGS03]
gi|416847425|ref|ZP_11907147.1| ribosomal RNA large subunit methyltransferase N [Staphylococcus
aureus O46]
gi|417650115|ref|ZP_12299892.1| 23S rRNA m2A2503 methyltransferase [Staphylococcus aureus subsp.
aureus 21189]
gi|417651330|ref|ZP_12301093.1| 23S rRNA m2A2503 methyltransferase [Staphylococcus aureus subsp.
aureus 21172]
gi|417655566|ref|ZP_12305276.1| 23S rRNA m2A2503 methyltransferase [Staphylococcus aureus subsp.
aureus 21193]
gi|417802941|ref|ZP_12449990.1| 23S rRNA m2A2503 methyltransferase [Staphylococcus aureus subsp.
aureus 21318]
gi|417887055|ref|ZP_12531194.1| 23S rRNA m2A2503 methyltransferase [Staphylococcus aureus subsp.
aureus 21195]
gi|417891668|ref|ZP_12535725.1| 23S rRNA m2A2503 methyltransferase [Staphylococcus aureus subsp.
aureus 21200]
gi|417892162|ref|ZP_12536216.1| 23S rRNA m2A2503 methyltransferase [Staphylococcus aureus subsp.
aureus 21201]
gi|417896164|ref|ZP_12540131.1| 23S rRNA m2A2503 methyltransferase [Staphylococcus aureus subsp.
aureus 21235]
gi|417899989|ref|ZP_12543888.1| 23S rRNA m2A2503 methyltransferase [Staphylococcus aureus subsp.
aureus 21259]
gi|417903408|ref|ZP_12547255.1| 23S rRNA m2A2503 methyltransferase [Staphylococcus aureus subsp.
aureus 21269]
gi|418280923|ref|ZP_12893745.1| 23S rRNA m2A2503 methyltransferase [Staphylococcus aureus subsp.
aureus 21178]
gi|418282982|ref|ZP_12895739.1| 23S rRNA m2A2503 methyltransferase [Staphylococcus aureus subsp.
aureus 21202]
gi|418306683|ref|ZP_12918458.1| 23S rRNA m2A2503 methyltransferase [Staphylococcus aureus subsp.
aureus 21194]
gi|418309840|ref|ZP_12921391.1| 23S rRNA m2A2503 methyltransferase [Staphylococcus aureus subsp.
aureus 21331]
gi|418312482|ref|ZP_12923991.1| 23S rRNA m2A2503 methyltransferase [Staphylococcus aureus subsp.
aureus 21334]
gi|418317730|ref|ZP_12929146.1| 23S rRNA m2A2503 methyltransferase [Staphylococcus aureus subsp.
aureus 21232]
gi|418424358|ref|ZP_12997480.1| ribosomal RNA large subunit methyltransferase N [Staphylococcus
aureus subsp. aureus VRS1]
gi|418427353|ref|ZP_13000365.1| ribosomal RNA large subunit methyltransferase N [Staphylococcus
aureus subsp. aureus VRS2]
gi|418430194|ref|ZP_13003110.1| ribosomal RNA large subunit methyltransferase N [Staphylococcus
aureus subsp. aureus VRS3a]
gi|418433155|ref|ZP_13005935.1| ribosomal RNA large subunit methyltransferase N [Staphylococcus
aureus subsp. aureus VRS4]
gi|418436830|ref|ZP_13008632.1| ribosomal RNA large subunit methyltransferase N [Staphylococcus
aureus subsp. aureus VRS5]
gi|418439701|ref|ZP_13011409.1| ribosomal RNA large subunit methyltransferase N [Staphylococcus
aureus subsp. aureus VRS6]
gi|418442754|ref|ZP_13014356.1| ribosomal RNA large subunit methyltransferase N [Staphylococcus
aureus subsp. aureus VRS7]
gi|418445813|ref|ZP_13017289.1| ribosomal RNA large subunit methyltransferase N [Staphylococcus
aureus subsp. aureus VRS8]
gi|418448757|ref|ZP_13020149.1| ribosomal RNA large subunit methyltransferase N [Staphylococcus
aureus subsp. aureus VRS9]
gi|418451581|ref|ZP_13022915.1| ribosomal RNA large subunit methyltransferase N [Staphylococcus
aureus subsp. aureus VRS10]
gi|418454637|ref|ZP_13025899.1| ribosomal RNA large subunit methyltransferase N [Staphylococcus
aureus subsp. aureus VRS11a]
gi|418457513|ref|ZP_13028716.1| ribosomal RNA large subunit methyltransferase N [Staphylococcus
aureus subsp. aureus VRS11b]
gi|418559101|ref|ZP_13123647.1| 23S rRNA m2A2503 methyltransferase [Staphylococcus aureus subsp.
aureus 21252]
gi|418566654|ref|ZP_13131027.1| 23S rRNA m2A2503 methyltransferase [Staphylococcus aureus subsp.
aureus 21264]
gi|418568986|ref|ZP_13133326.1| 23S rRNA m2A2503 methyltransferase [Staphylococcus aureus subsp.
aureus 21272]
gi|418570871|ref|ZP_13135132.1| 23S rRNA m2A2503 methyltransferase [Staphylococcus aureus subsp.
aureus 21283]
gi|418572174|ref|ZP_13136386.1| 23S rRNA m2A2503 methyltransferase [Staphylococcus aureus subsp.
aureus 21333]
gi|418579049|ref|ZP_13143144.1| 23S rRNA methyltransferase [Staphylococcus aureus subsp. aureus
CIG1114]
gi|418582052|ref|ZP_13146130.1| 23S rRNA methyltransferase [Staphylococcus aureus subsp. aureus
CIG1605]
gi|418597731|ref|ZP_13161253.1| 23S rRNA m2A2503 methyltransferase [Staphylococcus aureus subsp.
aureus 21342]
gi|418599610|ref|ZP_13163090.1| 23S rRNA m2A2503 methyltransferase [Staphylococcus aureus subsp.
aureus 21343]
gi|418603117|ref|ZP_13166508.1| 23S rRNA m2A2503 methyltransferase [Staphylococcus aureus subsp.
aureus 21345]
gi|418637958|ref|ZP_13200261.1| 23S rRNA m2A2503 methyltransferase [Staphylococcus aureus subsp.
aureus IS-3]
gi|418647599|ref|ZP_13209662.1| 23S rRNA m2A2503 methyltransferase [Staphylococcus aureus subsp.
aureus IS-88]
gi|418649300|ref|ZP_13211328.1| 23S rRNA m2A2503 methyltransferase [Staphylococcus aureus subsp.
aureus IS-91]
gi|418654795|ref|ZP_13216691.1| 23S rRNA m2A2503 methyltransferase [Staphylococcus aureus subsp.
aureus IS-99]
gi|418658934|ref|ZP_13220631.1| 23S rRNA m2A2503 methyltransferase [Staphylococcus aureus subsp.
aureus IS-111]
gi|418873618|ref|ZP_13427913.1| 23S rRNA m2A2503 methyltransferase [Staphylococcus aureus subsp.
aureus IS-125]
gi|418878067|ref|ZP_13432302.1| 23S rRNA methyltransferase [Staphylococcus aureus subsp. aureus
CIG1165]
gi|418880895|ref|ZP_13435114.1| 23S rRNA methyltransferase [Staphylococcus aureus subsp. aureus
CIG1213]
gi|418883824|ref|ZP_13438019.1| 23S rRNA methyltransferase [Staphylococcus aureus subsp. aureus
CIG1769]
gi|418886479|ref|ZP_13440627.1| 23S rRNA methyltransferase [Staphylococcus aureus subsp. aureus
CIG1150]
gi|418889009|ref|ZP_13443145.1| 23S rRNA methyltransferase [Staphylococcus aureus subsp. aureus
CIG1524]
gi|418891851|ref|ZP_13445966.1| 23S rRNA methyltransferase [Staphylococcus aureus subsp. aureus
CIG1176]
gi|418894917|ref|ZP_13449012.1| 23S rRNA methyltransferase [Staphylococcus aureus subsp. aureus
CIG1057]
gi|418900625|ref|ZP_13454682.1| 23S rRNA methyltransferase [Staphylococcus aureus subsp. aureus
CIG1214]
gi|418903427|ref|ZP_13457468.1| 23S rRNA methyltransferase [Staphylococcus aureus subsp. aureus
CIG1770]
gi|418906153|ref|ZP_13460180.1| 23S rRNA methyltransferase [Staphylococcus aureus subsp. aureus
CIGC345D]
gi|418908929|ref|ZP_13462932.1| 23S rRNA methyltransferase [Staphylococcus aureus subsp. aureus
CIG149]
gi|418911824|ref|ZP_13465807.1| 23S rRNA methyltransferase [Staphylococcus aureus subsp. aureus
CIG547]
gi|418914316|ref|ZP_13468288.1| 23S rRNA methyltransferase [Staphylococcus aureus subsp. aureus
CIGC340D]
gi|418917013|ref|ZP_13470972.1| 23S rRNA methyltransferase [Staphylococcus aureus subsp. aureus
CIG1267]
gi|418922800|ref|ZP_13476717.1| 23S rRNA methyltransferase [Staphylococcus aureus subsp. aureus
CIG1233]
gi|418928475|ref|ZP_13482361.1| 23S rRNA methyltransferase [Staphylococcus aureus subsp. aureus
CIG1612]
gi|418931288|ref|ZP_13485129.1| 23S rRNA methyltransferase [Staphylococcus aureus subsp. aureus
CIG1750]
gi|418946946|ref|ZP_13499345.1| 23S rRNA m2A2503 methyltransferase [Staphylococcus aureus subsp.
aureus IS-157]
gi|418955532|ref|ZP_13507472.1| 23S rRNA m2A2503 methyltransferase [Staphylococcus aureus subsp.
aureus IS-189]
gi|418978540|ref|ZP_13526340.1| 23S rRNA (adenine(2503)-C(2))-methyltransferase [Staphylococcus
aureus subsp. aureus DR10]
gi|418982131|ref|ZP_13529839.1| 23S rRNA methyltransferase [Staphylococcus aureus subsp. aureus
CIG1242]
gi|418985798|ref|ZP_13533484.1| 23S rRNA methyltransferase [Staphylococcus aureus subsp. aureus
CIG1500]
gi|418991080|ref|ZP_13538741.1| 23S rRNA methyltransferase [Staphylococcus aureus subsp. aureus
CIG1096]
gi|419775212|ref|ZP_14301154.1| 23S rRNA m2A2503 methyltransferase [Staphylococcus aureus subsp.
aureus CO-23]
gi|419784883|ref|ZP_14310642.1| 23S rRNA m2A2503 methyltransferase [Staphylococcus aureus subsp.
aureus IS-M]
gi|421150104|ref|ZP_15609760.1| ribosomal RNA large subunit methyltransferase N [Staphylococcus
aureus subsp. aureus str. Newbould 305]
gi|422742334|ref|ZP_16796340.1| radical SAM enzyme, Cfr family [Staphylococcus aureus subsp. aureus
MRSA177]
gi|422745552|ref|ZP_16799491.1| radical SAM enzyme, Cfr family [Staphylococcus aureus subsp. aureus
MRSA131]
gi|424768721|ref|ZP_18195981.1| 23S rRNA methyltransferase [Staphylococcus aureus subsp. aureus
CM05]
gi|424785048|ref|ZP_18211851.1| Ribosomal RNA large subunit methyltransferase N [Staphylococcus
aureus CN79]
gi|440707215|ref|ZP_20887915.1| 23S rRNA m2A2503 methyltransferase [Staphylococcus aureus subsp.
aureus 21282]
gi|440734664|ref|ZP_20914276.1| hypothetical protein SASA_06740 [Staphylococcus aureus subsp.
aureus DSM 20231]
gi|443636928|ref|ZP_21121021.1| 23S rRNA m2A2503 methyltransferase [Staphylococcus aureus subsp.
aureus 21236]
gi|448744036|ref|ZP_21725940.1| ribosomal RNA large subunit methyltransferase N [Staphylococcus
aureus KT/Y21]
gi|81651279|sp|Q6GHL7.1|RLMN_STAAR RecName: Full=Probable dual-specificity RNA methyltransferase RlmN;
AltName: Full=23S rRNA
(adenine(2503)-C(2))-methyltransferase; AltName:
Full=23S rRNA m2A2503 methyltransferase; AltName:
Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=tRNA (adenine(37)-C(2))-methyltransferase;
AltName: Full=tRNA m2A37 methyltransferase
gi|81694662|sp|Q5HGL4.1|RLMN_STAAC RecName: Full=Probable dual-specificity RNA methyltransferase RlmN;
AltName: Full=23S rRNA
(adenine(2503)-C(2))-methyltransferase; AltName:
Full=23S rRNA m2A2503 methyltransferase; AltName:
Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=tRNA (adenine(37)-C(2))-methyltransferase;
AltName: Full=tRNA m2A37 methyltransferase
gi|81705804|sp|Q7A600.1|RLMN_STAAN RecName: Full=Probable dual-specificity RNA methyltransferase RlmN;
AltName: Full=23S rRNA
(adenine(2503)-C(2))-methyltransferase; AltName:
Full=23S rRNA m2A2503 methyltransferase; AltName:
Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=tRNA (adenine(37)-C(2))-methyltransferase;
AltName: Full=tRNA m2A37 methyltransferase
gi|81781713|sp|Q99UQ0.1|RLMN_STAAM RecName: Full=Probable dual-specificity RNA methyltransferase RlmN;
AltName: Full=23S rRNA
(adenine(2503)-C(2))-methyltransferase; AltName:
Full=23S rRNA m2A2503 methyltransferase; AltName:
Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=tRNA (adenine(37)-C(2))-methyltransferase;
AltName: Full=tRNA m2A37 methyltransferase
gi|123098046|sp|Q2FZ66.1|RLMN_STAA8 RecName: Full=Probable dual-specificity RNA methyltransferase RlmN;
AltName: Full=23S rRNA
(adenine(2503)-C(2))-methyltransferase; AltName:
Full=23S rRNA m2A2503 methyltransferase; AltName:
Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=tRNA (adenine(37)-C(2))-methyltransferase;
AltName: Full=tRNA m2A37 methyltransferase
gi|123763308|sp|Q2FHM0.1|RLMN_STAA3 RecName: Full=Probable dual-specificity RNA methyltransferase RlmN;
AltName: Full=23S rRNA
(adenine(2503)-C(2))-methyltransferase; AltName:
Full=23S rRNA m2A2503 methyltransferase; AltName:
Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=tRNA (adenine(37)-C(2))-methyltransferase;
AltName: Full=tRNA m2A37 methyltransferase
gi|205829891|sp|A7X1H8.1|RLMN_STAA1 RecName: Full=Probable dual-specificity RNA methyltransferase RlmN;
AltName: Full=23S rRNA
(adenine(2503)-C(2))-methyltransferase; AltName:
Full=23S rRNA m2A2503 methyltransferase; AltName:
Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=tRNA (adenine(37)-C(2))-methyltransferase;
AltName: Full=tRNA m2A37 methyltransferase
gi|205829892|sp|A6U137.1|RLMN_STAA2 RecName: Full=Probable dual-specificity RNA methyltransferase RlmN;
AltName: Full=23S rRNA
(adenine(2503)-C(2))-methyltransferase; AltName:
Full=23S rRNA m2A2503 methyltransferase; AltName:
Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=tRNA (adenine(37)-C(2))-methyltransferase;
AltName: Full=tRNA m2A37 methyltransferase
gi|205829893|sp|A5ISA3.1|RLMN_STAA9 RecName: Full=Probable dual-specificity RNA methyltransferase RlmN;
AltName: Full=23S rRNA
(adenine(2503)-C(2))-methyltransferase; AltName:
Full=23S rRNA m2A2503 methyltransferase; AltName:
Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=tRNA (adenine(37)-C(2))-methyltransferase;
AltName: Full=tRNA m2A37 methyltransferase
gi|205829894|sp|A6QGB8.1|RLMN_STAAE RecName: Full=Probable dual-specificity RNA methyltransferase RlmN;
AltName: Full=23S rRNA
(adenine(2503)-C(2))-methyltransferase; AltName:
Full=23S rRNA m2A2503 methyltransferase; AltName:
Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=tRNA (adenine(37)-C(2))-methyltransferase;
AltName: Full=tRNA m2A37 methyltransferase
gi|205829895|sp|A8Z3Q4.1|RLMN_STAAT RecName: Full=Probable dual-specificity RNA methyltransferase RlmN;
AltName: Full=23S rRNA
(adenine(2503)-C(2))-methyltransferase; AltName:
Full=23S rRNA m2A2503 methyltransferase; AltName:
Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=tRNA (adenine(37)-C(2))-methyltransferase;
AltName: Full=tRNA m2A37 methyltransferase
gi|13701018|dbj|BAB42313.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
N315]
gi|14246988|dbj|BAB57380.1| similar to Fe-S-cluster redox enzyme [Staphylococcus aureus subsp.
aureus Mu50]
gi|49241510|emb|CAG40196.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
MRSA252]
gi|57285973|gb|AAW38067.1| conserved hypothetical protein TIGR00048 [Staphylococcus aureus
subsp. aureus COL]
gi|87126321|gb|ABD20835.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
USA300_FPR3757]
gi|87202482|gb|ABD30292.1| radical SAM enzyme, Cfr family [Staphylococcus aureus subsp. aureus
NCTC 8325]
gi|147740778|gb|ABQ49076.1| radical SAM enzyme, Cfr family [Staphylococcus aureus subsp. aureus
JH9]
gi|149946219|gb|ABR52155.1| radical SAM enzyme, Cfr family [Staphylococcus aureus subsp. aureus
JH1]
gi|150374140|dbj|BAF67400.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
str. Newman]
gi|156721674|dbj|BAF78091.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
Mu3]
gi|160368199|gb|ABX29170.1| possible Fe-S-cluster redox enzyme [Staphylococcus aureus subsp.
aureus USA300_TCH1516]
gi|253724434|gb|EES93163.1| Fe-S-cluster redox enzyme [Staphylococcus aureus subsp. aureus
USA300_TCH959]
gi|253728598|gb|EES97327.1| Fe-S-cluster redox enzyme [Staphylococcus aureus subsp. aureus
TCH130]
gi|257271728|gb|EEV03866.1| cfr family radical SAM enzyme [Staphylococcus aureus subsp. aureus
55/2053]
gi|257274772|gb|EEV06259.1| cfr family radical SAM enzyme [Staphylococcus aureus subsp. aureus
65-1322]
gi|257278692|gb|EEV09311.1| ribosomal RNA large subunit methyltransferase N [Staphylococcus
aureus subsp. aureus 68-397]
gi|257281418|gb|EEV11555.1| ribosomal RNA large subunit methyltransferase N [Staphylococcus
aureus subsp. aureus E1410]
gi|257284449|gb|EEV14569.1| cfr family radical SAM enzyme [Staphylococcus aureus subsp. aureus
M876]
gi|257789698|gb|EEV28038.1| cfr family radical SAM enzyme [Staphylococcus aureus A9781]
gi|257839286|gb|EEV63760.1| ribosomal large subunit methyltransferase N [Staphylococcus aureus
A9763]
gi|257844282|gb|EEV68664.1| cfr family radical SAM enzyme [Staphylococcus aureus A9719]
gi|257845971|gb|EEV69999.1| cfr family radical SAM enzyme [Staphylococcus aureus A9635]
gi|257847998|gb|EEV71991.1| ribosomal RNA large subunit methyltransferase N [Staphylococcus
aureus A9299]
gi|257850048|gb|EEV74001.1| ribosomal RNA large subunit methyltransferase N [Staphylococcus
aureus A8115]
gi|257853803|gb|EEV76762.1| cfr family radical SAM enzyme [Staphylococcus aureus A6300]
gi|257857442|gb|EEV80340.1| cfr family radical SAM enzyme [Staphylococcus aureus A6224]
gi|257859733|gb|EEV82575.1| ribosomal RNA large subunit methyltransferase N [Staphylococcus
aureus A5948]
gi|257863216|gb|EEV85980.1| ribosomal RNA large subunit methyltransferase N [Staphylococcus
aureus A5937]
gi|259160251|gb|EEW45279.1| hypothetical protein SA930_1400 [Staphylococcus aureus 930918-3]
gi|262075123|gb|ACY11096.1| hypothetical protein SAAV_1190 [Staphylococcus aureus subsp. aureus
ED98]
gi|269940710|emb|CBI49091.1| Ribosomal RNA large subunit methyltransferase N [Staphylococcus
aureus subsp. aureus TW20]
gi|282314010|gb|EFB44402.1| cfr family radical SAM enzyme [Staphylococcus aureus subsp. aureus
C101]
gi|282316725|gb|EFB47099.1| radical SAM enzyme, Cfr family protein [Staphylococcus aureus
subsp. aureus C427]
gi|282319907|gb|EFB50255.1| cfr family radical SAM enzyme [Staphylococcus aureus subsp. aureus
D139]
gi|282322061|gb|EFB52385.1| radical SAM enzyme, Cfr family [Staphylococcus aureus subsp. aureus
M899]
gi|282325395|gb|EFB55704.1| ribosomal RNA large subunit methyltransferase N [Staphylococcus
aureus subsp. aureus WBG10049]
gi|282327573|gb|EFB57856.1| ribosomal RNA large subunit methyltransferase N [Staphylococcus
aureus subsp. aureus WW2703/97]
gi|282330827|gb|EFB60341.1| radical SAM enzyme Cfr family protein [Staphylococcus aureus subsp.
aureus Btn1260]
gi|282590561|gb|EFB95638.1| cfr family radical SAM enzyme [Staphylococcus aureus A10102]
gi|282594716|gb|EFB99700.1| cfr family radical SAM enzyme [Staphylococcus aureus A9765]
gi|282595389|gb|EFC00353.1| radical SAM enzyme, Cfr family [Staphylococcus aureus subsp. aureus
C160]
gi|282764701|gb|EFC04826.1| cfr family radical SAM enzyme [Staphylococcus aureus A8117]
gi|283460426|gb|EFC07516.1| ribosomal RNA large subunit methyltransferase N [Staphylococcus
aureus subsp. aureus H19]
gi|283470430|emb|CAQ49641.1| radical SAM enzyme, Cfr family [Staphylococcus aureus subsp. aureus
ST398]
gi|283790108|gb|EFC28925.1| cfr family radical SAM enzyme [Staphylococcus aureus subsp. aureus
A017934/97]
gi|285816900|gb|ADC37387.1| Ribosomal RNA large subunit methyltransferase N [Staphylococcus
aureus 04-02981]
gi|290920645|gb|EFD97708.1| radical SAM enzyme, Cfr family [Staphylococcus aureus subsp. aureus
M1015]
gi|291096031|gb|EFE26292.1| cfr family radical SAM enzyme [Staphylococcus aureus subsp. aureus
58-424]
gi|291466929|gb|EFF09447.1| cfr family radical SAM enzyme [Staphylococcus aureus subsp. aureus
M809]
gi|294825011|gb|EFG41433.1| cfr family radical SAM enzyme [Staphylococcus aureus A9754]
gi|294968009|gb|EFG44037.1| LOW QUALITY PROTEIN: cfr family radical SAM enzyme [Staphylococcus
aureus A8819]
gi|295128061|gb|EFG57695.1| cfr family radical SAM enzyme [Staphylococcus aureus subsp. aureus
EMRSA16]
gi|297177122|gb|EFH36376.1| cfr family radical SAM enzyme [Staphylococcus aureus A8796]
gi|297576224|gb|EFH94940.1| cfr family radical SAM enzyme [Staphylococcus aureus subsp. aureus
MN8]
gi|298694511|gb|ADI97733.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
ED133]
gi|302332822|gb|ADL23015.1| Ribosomal RNA large subunit methyltransferase N, Rlmn
[Staphylococcus aureus subsp. aureus JKD6159]
gi|302751041|gb|ADL65218.1| Ribosomal RNA large subunit methyltransferase N, Rlmn
[Staphylococcus aureus subsp. aureus str. JKD6008]
gi|304340202|gb|EFM06143.1| cfr family radical SAM enzyme [Staphylococcus aureus subsp. aureus
ATCC BAA-39]
gi|312438405|gb|ADQ77476.1| cfr family radical SAM enzyme [Staphylococcus aureus subsp. aureus
TCH60]
gi|312829612|emb|CBX34454.1| radical SAM superfamily protein [Staphylococcus aureus subsp.
aureus ECT-R 2]
gi|315131009|gb|EFT86993.1| possible Fe-S-cluster redox enzyme [Staphylococcus aureus subsp.
aureus CGS03]
gi|315194104|gb|EFU24497.1| possible Fe-S-cluster redox enzyme [Staphylococcus aureus subsp.
aureus CGS00]
gi|315198455|gb|EFU28784.1| possible Fe-S-cluster redox enzyme [Staphylococcus aureus subsp.
aureus CGS01]
gi|320140967|gb|EFW32814.1| radical SAM enzyme, Cfr family [Staphylococcus aureus subsp. aureus
MRSA131]
gi|320144318|gb|EFW36084.1| radical SAM enzyme, Cfr family [Staphylococcus aureus subsp. aureus
MRSA177]
gi|323442309|gb|EGA99939.1| ribosomal RNA large subunit methyltransferase N [Staphylococcus
aureus O46]
gi|329313887|gb|AEB88300.1| Ribosomal RNA large subunit methyltransferase N [Staphylococcus
aureus subsp. aureus T0131]
gi|329724771|gb|EGG61276.1| 23S rRNA m2A2503 methyltransferase [Staphylococcus aureus subsp.
aureus 21189]
gi|329727514|gb|EGG63970.1| 23S rRNA m2A2503 methyltransferase [Staphylococcus aureus subsp.
aureus 21172]
gi|329728784|gb|EGG65205.1| 23S rRNA m2A2503 methyltransferase [Staphylococcus aureus subsp.
aureus 21193]
gi|334273489|gb|EGL91834.1| 23S rRNA m2A2503 methyltransferase [Staphylococcus aureus subsp.
aureus 21318]
gi|341841065|gb|EGS82537.1| 23S rRNA m2A2503 methyltransferase [Staphylococcus aureus subsp.
aureus 21235]
gi|341843597|gb|EGS84820.1| 23S rRNA m2A2503 methyltransferase [Staphylococcus aureus subsp.
aureus 21259]
gi|341850029|gb|EGS91162.1| 23S rRNA m2A2503 methyltransferase [Staphylococcus aureus subsp.
aureus 21269]
gi|341850954|gb|EGS91883.1| 23S rRNA m2A2503 methyltransferase [Staphylococcus aureus subsp.
aureus 21200]
gi|341858129|gb|EGS98930.1| 23S rRNA m2A2503 methyltransferase [Staphylococcus aureus subsp.
aureus 21201]
gi|341858477|gb|EGS99267.1| 23S rRNA m2A2503 methyltransferase [Staphylococcus aureus subsp.
aureus 21195]
gi|364522435|gb|AEW65185.1| 23S rRNA methyltransferase [Staphylococcus aureus subsp. aureus
11819-97]
gi|365167024|gb|EHM58501.1| 23S rRNA m2A2503 methyltransferase [Staphylococcus aureus subsp.
aureus 21178]
gi|365168579|gb|EHM59917.1| 23S rRNA m2A2503 methyltransferase [Staphylococcus aureus subsp.
aureus 21202]
gi|365237963|gb|EHM78802.1| 23S rRNA m2A2503 methyltransferase [Staphylococcus aureus subsp.
aureus 21331]
gi|365238127|gb|EHM78964.1| 23S rRNA m2A2503 methyltransferase [Staphylococcus aureus subsp.
aureus 21334]
gi|365244998|gb|EHM85650.1| 23S rRNA m2A2503 methyltransferase [Staphylococcus aureus subsp.
aureus 21232]
gi|365246399|gb|EHM86953.1| 23S rRNA m2A2503 methyltransferase [Staphylococcus aureus subsp.
aureus 21194]
gi|371969924|gb|EHO87362.1| 23S rRNA m2A2503 methyltransferase [Staphylococcus aureus subsp.
aureus 21264]
gi|371975392|gb|EHO92686.1| 23S rRNA m2A2503 methyltransferase [Staphylococcus aureus subsp.
aureus 21252]
gi|371978171|gb|EHO95421.1| 23S rRNA m2A2503 methyltransferase [Staphylococcus aureus subsp.
aureus 21272]
gi|371983051|gb|EHP00199.1| 23S rRNA m2A2503 methyltransferase [Staphylococcus aureus subsp.
aureus 21283]
gi|371984658|gb|EHP01767.1| 23S rRNA m2A2503 methyltransferase [Staphylococcus aureus subsp.
aureus 21333]
gi|374363106|gb|AEZ37211.1| ribosomal RNA large subunit methyltransferase N [Staphylococcus
aureus subsp. aureus VC40]
gi|374393793|gb|EHQ65097.1| 23S rRNA m2A2503 methyltransferase [Staphylococcus aureus subsp.
aureus 21342]
gi|374393846|gb|EHQ65149.1| 23S rRNA m2A2503 methyltransferase [Staphylococcus aureus subsp.
aureus 21345]
gi|374396268|gb|EHQ67509.1| 23S rRNA m2A2503 methyltransferase [Staphylococcus aureus subsp.
aureus 21343]
gi|375014620|gb|EHS08301.1| 23S rRNA m2A2503 methyltransferase [Staphylococcus aureus subsp.
aureus IS-99]
gi|375023182|gb|EHS16645.1| 23S rRNA m2A2503 methyltransferase [Staphylococcus aureus subsp.
aureus IS-3]
gi|375029309|gb|EHS22637.1| 23S rRNA m2A2503 methyltransferase [Staphylococcus aureus subsp.
aureus IS-88]
gi|375029673|gb|EHS22998.1| 23S rRNA m2A2503 methyltransferase [Staphylococcus aureus subsp.
aureus IS-91]
gi|375037196|gb|EHS30248.1| 23S rRNA m2A2503 methyltransferase [Staphylococcus aureus subsp.
aureus IS-111]
gi|375366155|gb|EHS70167.1| 23S rRNA m2A2503 methyltransferase [Staphylococcus aureus subsp.
aureus IS-125]
gi|375371015|gb|EHS74807.1| 23S rRNA m2A2503 methyltransferase [Staphylococcus aureus subsp.
aureus IS-189]
gi|375377143|gb|EHS80633.1| 23S rRNA m2A2503 methyltransferase [Staphylococcus aureus subsp.
aureus IS-157]
gi|377694189|gb|EHT18554.1| 23S rRNA methyltransferase [Staphylococcus aureus subsp. aureus
CIG1165]
gi|377694723|gb|EHT19087.1| 23S rRNA methyltransferase [Staphylococcus aureus subsp. aureus
CIG1057]
gi|377697076|gb|EHT21431.1| 23S rRNA methyltransferase [Staphylococcus aureus subsp. aureus
CIG1114]
gi|377703093|gb|EHT27409.1| 23S rRNA methyltransferase [Staphylococcus aureus subsp. aureus
CIG1214]
gi|377704412|gb|EHT28721.1| 23S rRNA methyltransferase [Staphylococcus aureus subsp. aureus
CIG1242]
gi|377705616|gb|EHT29920.1| 23S rRNA methyltransferase [Staphylococcus aureus subsp. aureus
CIG1500]
gi|377710462|gb|EHT34700.1| 23S rRNA methyltransferase [Staphylococcus aureus subsp. aureus
CIG1605]
gi|377714570|gb|EHT38769.1| 23S rRNA methyltransferase [Staphylococcus aureus subsp. aureus
CIG1750]
gi|377714911|gb|EHT39109.1| 23S rRNA methyltransferase [Staphylococcus aureus subsp. aureus
CIG1769]
gi|377723202|gb|EHT47327.1| 23S rRNA methyltransferase [Staphylococcus aureus subsp. aureus
CIG1096]
gi|377725202|gb|EHT49317.1| 23S rRNA methyltransferase [Staphylococcus aureus subsp. aureus
CIG547]
gi|377725432|gb|EHT49545.1| 23S rRNA methyltransferase [Staphylococcus aureus subsp. aureus
CIG1150]
gi|377731183|gb|EHT55240.1| 23S rRNA methyltransferase [Staphylococcus aureus subsp. aureus
CIG1176]
gi|377731788|gb|EHT55841.1| 23S rRNA methyltransferase [Staphylococcus aureus subsp. aureus
CIG1213]
gi|377736123|gb|EHT60153.1| 23S rRNA methyltransferase [Staphylococcus aureus subsp. aureus
CIG1233]
gi|377738387|gb|EHT62396.1| 23S rRNA methyltransferase [Staphylococcus aureus subsp. aureus
CIG1612]
gi|377742442|gb|EHT66427.1| 23S rRNA methyltransferase [Staphylococcus aureus subsp. aureus
CIG1770]
gi|377750187|gb|EHT74125.1| 23S rRNA methyltransferase [Staphylococcus aureus subsp. aureus
CIG1267]
gi|377753967|gb|EHT77877.1| 23S rRNA methyltransferase [Staphylococcus aureus subsp. aureus
CIG149]
gi|377754519|gb|EHT78428.1| 23S rRNA methyltransferase [Staphylococcus aureus subsp. aureus
CIG1524]
gi|377757818|gb|EHT81706.1| 23S rRNA methyltransferase [Staphylococcus aureus subsp. aureus
CIGC340D]
gi|377765453|gb|EHT89303.1| 23S rRNA methyltransferase [Staphylococcus aureus subsp. aureus
CIGC345D]
gi|379993364|gb|EIA14810.1| 23S rRNA (adenine(2503)-C(2))-methyltransferase [Staphylococcus
aureus subsp. aureus DR10]
gi|383363641|gb|EID40972.1| 23S rRNA m2A2503 methyltransferase [Staphylococcus aureus subsp.
aureus IS-M]
gi|383970896|gb|EID86986.1| 23S rRNA m2A2503 methyltransferase [Staphylococcus aureus subsp.
aureus CO-23]
gi|384230191|gb|AFH69438.1| Radical SAM family enzyme [Staphylococcus aureus subsp. aureus
71193]
gi|387718589|gb|EIK06547.1| ribosomal RNA large subunit methyltransferase N [Staphylococcus
aureus subsp. aureus VRS3a]
gi|387718940|gb|EIK06896.1| ribosomal RNA large subunit methyltransferase N [Staphylococcus
aureus subsp. aureus VRS2]
gi|387720265|gb|EIK08177.1| ribosomal RNA large subunit methyltransferase N [Staphylococcus
aureus subsp. aureus VRS1]
gi|387725821|gb|EIK13419.1| ribosomal RNA large subunit methyltransferase N [Staphylococcus
aureus subsp. aureus VRS4]
gi|387727934|gb|EIK15434.1| ribosomal RNA large subunit methyltransferase N [Staphylococcus
aureus subsp. aureus VRS5]
gi|387730804|gb|EIK18162.1| ribosomal RNA large subunit methyltransferase N [Staphylococcus
aureus subsp. aureus VRS6]
gi|387735741|gb|EIK22851.1| ribosomal RNA large subunit methyltransferase N [Staphylococcus
aureus subsp. aureus VRS8]
gi|387737419|gb|EIK24485.1| ribosomal RNA large subunit methyltransferase N [Staphylococcus
aureus subsp. aureus VRS7]
gi|387737973|gb|EIK25027.1| ribosomal RNA large subunit methyltransferase N [Staphylococcus
aureus subsp. aureus VRS9]
gi|387744462|gb|EIK31226.1| ribosomal RNA large subunit methyltransferase N [Staphylococcus
aureus subsp. aureus VRS10]
gi|387745752|gb|EIK32502.1| ribosomal RNA large subunit methyltransferase N [Staphylococcus
aureus subsp. aureus VRS11a]
gi|387747245|gb|EIK33954.1| ribosomal RNA large subunit methyltransferase N [Staphylococcus
aureus subsp. aureus VRS11b]
gi|394329494|gb|EJE55596.1| ribosomal RNA large subunit methyltransferase N [Staphylococcus
aureus subsp. aureus str. Newbould 305]
gi|402348491|gb|EJU83478.1| 23S rRNA methyltransferase [Staphylococcus aureus subsp. aureus
CM05]
gi|404440046|gb|AFR73239.1| hypothetical protein C248_1248 [Staphylococcus aureus 08BA02176]
gi|408423416|emb|CCJ10827.1| Ribosomal RNA large subunit methyltransferase N [Staphylococcus
aureus subsp. aureus ST228]
gi|408425406|emb|CCJ12793.1| Ribosomal RNA large subunit methyltransferase N [Staphylococcus
aureus subsp. aureus ST228]
gi|408427394|emb|CCJ14757.1| Ribosomal RNA large subunit methyltransferase N [Staphylococcus
aureus subsp. aureus ST228]
gi|408429381|emb|CCJ26546.1| Ribosomal RNA large subunit methyltransferase N [Staphylococcus
aureus subsp. aureus ST228]
gi|408431369|emb|CCJ18684.1| Ribosomal RNA large subunit methyltransferase N [Staphylococcus
aureus subsp. aureus ST228]
gi|408433363|emb|CCJ20648.1| Ribosomal RNA large subunit methyltransferase N [Staphylococcus
aureus subsp. aureus ST228]
gi|408435354|emb|CCJ22614.1| Ribosomal RNA large subunit methyltransferase N [Staphylococcus
aureus subsp. aureus ST228]
gi|408437339|emb|CCJ24582.1| Ribosomal RNA large subunit methyltransferase N [Staphylococcus
aureus subsp. aureus ST228]
gi|421956458|gb|EKU08787.1| Ribosomal RNA large subunit methyltransferase N [Staphylococcus
aureus CN79]
gi|436431692|gb|ELP29045.1| hypothetical protein SASA_06740 [Staphylococcus aureus subsp.
aureus DSM 20231]
gi|436506254|gb|ELP42087.1| 23S rRNA m2A2503 methyltransferase [Staphylococcus aureus subsp.
aureus 21282]
gi|443406905|gb|ELS65475.1| 23S rRNA m2A2503 methyltransferase [Staphylococcus aureus subsp.
aureus 21236]
gi|445562632|gb|ELY18799.1| ribosomal RNA large subunit methyltransferase N [Staphylococcus
aureus KT/Y21]
Length = 364
Score = 196 bits (497), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 110/313 (35%), Positives = 174/313 (55%), Gaps = 23/313 (7%)
Query: 44 DEFPSLPSAAYSLLRSKFKPLTSTLHSVVDSSDDVTTKLLVKLQNGGFVEAVIMRYDSSL 103
DE +L LL+ F T T +S D T K L +LQ+G +E V+MR+D
Sbjct: 59 DEMTNLSKDLRQLLKDNFTVTTLTTVVKQESKDG-TIKFLFELQDGYTIETVLMRHDYG- 116
Query: 104 GKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRL--- 160
+++C+++QVGC++GC FCA+ G K NL +GEIV Q++ +
Sbjct: 117 -------------NSVCVTTQVGCRIGCTFCASTLGGLKRNLEAGEIVSQVLTVQKALDA 163
Query: 161 --SNIRNVVFMGMGEPLNNYAALVEAVRIMTGL-PFQVSPKRITVSTVGIVHAINKFHSD 217
+ +V MG+GEP NY +++ +RI+ + + ITVST GI+ I F +
Sbjct: 164 TEERVSQIVIMGIGEPFENYDEMMDFLRIVNDDNSLNIGARHITVSTSGIIPRIYDFADE 223
Query: 218 LPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVND 277
+N AVSLHA +VR ++MP RA+ +EKL+ A++ YQ+ + +++ EY + GVND
Sbjct: 224 DIQINFAVSLHAAKDEVRSRLMPINRAYNVEKLIEAIQYYQEKTNRRVTFEYGLFGGVND 283
Query: 278 EEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRK 337
+ +HA +L L++ VNLIP N + + +T+ +D + F+K L+ I T+R+
Sbjct: 284 QLEHARELAHLIKGLNCHVNLIPVNHVPERNYVKTAKND-IFKFEKELK-RLGINATIRR 341
Query: 338 QMGQDISGACGQL 350
+ G DI ACGQL
Sbjct: 342 EQGSDIDAACGQL 354
>gi|307703606|ref|ZP_07640548.1| UPF0063 protein yfgB [Streptococcus oralis ATCC 35037]
gi|331266156|ref|YP_004325786.1| Radical SAM superfamily Fe-S-cluster redox protein [Streptococcus
oralis Uo5]
gi|417793879|ref|ZP_12441146.1| 23S rRNA m2A2503 methyltransferase [Streptococcus oralis SK255]
gi|417924708|ref|ZP_12568143.1| 23S rRNA m2A2503 methyltransferase [Streptococcus mitis SK569]
gi|417941068|ref|ZP_12584355.1| 23S rRNA m2A2503 methyltransferase [Streptococcus oralis SK313]
gi|419767060|ref|ZP_14293228.1| 23S rRNA m2A2503 methyltransferase [Streptococcus mitis SK579]
gi|419779250|ref|ZP_14305126.1| 23S rRNA m2A2503 methyltransferase [Streptococcus oralis SK10]
gi|419782343|ref|ZP_14308152.1| 23S rRNA m2A2503 methyltransferase [Streptococcus oralis SK610]
gi|419813893|ref|ZP_14338702.1| ribosomal RNA large subunit methyltransferase N [Streptococcus sp.
GMD2S]
gi|307623013|gb|EFO02008.1| UPF0063 protein yfgB [Streptococcus oralis ATCC 35037]
gi|326682828|emb|CBZ00445.1| Radical SAM superfamily, predicted Fe-S-cluster redox enzyme
[Streptococcus oralis Uo5]
gi|334271735|gb|EGL90117.1| 23S rRNA m2A2503 methyltransferase [Streptococcus oralis SK255]
gi|342835639|gb|EGU69874.1| 23S rRNA m2A2503 methyltransferase [Streptococcus mitis SK569]
gi|343388361|gb|EGV00947.1| 23S rRNA m2A2503 methyltransferase [Streptococcus oralis SK313]
gi|383183447|gb|EIC75984.1| 23S rRNA m2A2503 methyltransferase [Streptococcus oralis SK610]
gi|383186278|gb|EIC78748.1| 23S rRNA m2A2503 methyltransferase [Streptococcus oralis SK10]
gi|383353446|gb|EID31058.1| 23S rRNA m2A2503 methyltransferase [Streptococcus mitis SK579]
gi|404472494|gb|EKA16917.1| ribosomal RNA large subunit methyltransferase N [Streptococcus sp.
GMD2S]
Length = 361
Score = 196 bits (497), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 119/359 (33%), Positives = 191/359 (53%), Gaps = 30/359 (8%)
Query: 20 KAGIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKF--KPLTSTLHSVVDSSDD 77
+ G K+ IW+++ ++E +L + L +F PL +V S D
Sbjct: 19 EQGEKKFRADQIWEWLYRKRVQSFEEMTNLSKDLIAKLNDQFVVNPLK---QRIVQESAD 75
Query: 78 VTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATG 137
T K L +L +G +E V+MR L ++C+++QVGC +GC FCA+G
Sbjct: 76 GTVKYLFELPDGMLIETVLMRQHYGL--------------SVCVTTQVGCNIGCTFCASG 121
Query: 138 TMGFKSNLSSGEIVEQLVHASRLSNIR-------NVVFMGMGEPLNNYAALVEAVR-IMT 189
+ + +L++GEIV Q++ + + R ++V MG+GEP +NY ++ VR I
Sbjct: 122 LIKKQRDLNNGEIVAQIMLVQKYFDERGQDERVSHIVVMGIGEPFDNYNNVLNFVRTIND 181
Query: 190 GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEK 249
+ + ITVST G+ H I F ++ +NLAVSLHAP ++R IM RAFP+EK
Sbjct: 182 DKGMAIGARHITVSTSGLAHKIRDFANEGVQVNLAVSLHAPNNELRSSIMKINRAFPIEK 241
Query: 250 LMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVV--VNLIPFNPIGSV 307
L A++ Y + + +++ EYIML+ VND + A +L +LL+ + + VNLIP+NP+
Sbjct: 242 LFAAIEYYIETTNRRVTFEYIMLNEVNDGVEQALELAELLKNIKKLSYVNLIPYNPVSEH 301
Query: 308 SQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDKISAKSTPPV 366
Q+ S ++V +F L+ + VR++ G DI ACGQL N + K+ V
Sbjct: 302 DQYSRSPKERVMAFYDTLKKK-GVNCVVRQEHGTDIDAACGQLRSNTMKRDRQKAVAAV 359
>gi|306820530|ref|ZP_07454163.1| cfr family radical SAM enzyme [Eubacterium yurii subsp. margaretiae
ATCC 43715]
gi|304551444|gb|EFM39402.1| cfr family radical SAM enzyme [Eubacterium yurii subsp. margaretiae
ATCC 43715]
Length = 360
Score = 196 bits (497), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 121/348 (34%), Positives = 190/348 (54%), Gaps = 27/348 (7%)
Query: 9 FDGGIIRAEFEKAGIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTL 68
F +I FEK KQ + PL++K + +DE ++P + F + ++
Sbjct: 28 FQNILIENGFEKYRAKQIY-PLVYKGIKT-----FDEINNIPKNLKDFMLENFVVNSVSI 81
Query: 69 HSVVDSSDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCK 128
+ + S D T K L+KL++G +E V+M+Y L + CISSQVGC
Sbjct: 82 YEKLQSKKDYTKKYLMKLEDGNIIECVLMKYKFGL--------------SACISSQVGCL 127
Query: 129 MGCNFCATGTMGFK-SNLSSGEIVEQLVHASRL--SNIRNVVFMGMGEPLNNYAALVEAV 185
MGC FCA+ T+G K +LSSGE++ Q++ S I N+V MG GEP +NY L++
Sbjct: 128 MGCTFCAS-TVGSKVRDLSSGEMIGQILAMSNDVGEKISNIVIMGSGEPFDNYGNLLKFF 186
Query: 186 R-IMTGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARA 244
+M+ + + ITVST G+ I F +NLA+SLH P Q+ R QIMP +R
Sbjct: 187 DLVMSKDTLNIGARHITVSTCGLADKIIDFADRKLQINLAISLHNPNQEKRSQIMPISRK 246
Query: 245 FPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPI 304
F +++LM A++ Y + +++ EY +++ VND E+ A L +L++ +NLIP N
Sbjct: 247 FKIDELMRAVEYYISKTNRRVTYEYALINEVNDSEEDAKLLVQLVKNQLCHINLIPVNST 306
Query: 305 GSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVV 352
S ++ + ++ F IL + I T+R++MG DI+GACGQL +
Sbjct: 307 EH-SNYKKPDNIRIQKFMNILSKN-GINATIRREMGTDINGACGQLRI 352
>gi|160871646|ref|ZP_02061778.1| radical SAM enzyme, Cfr family [Rickettsiella grylli]
gi|159120445|gb|EDP45783.1| radical SAM enzyme, Cfr family [Rickettsiella grylli]
Length = 372
Score = 196 bits (497), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 114/315 (36%), Positives = 181/315 (57%), Gaps = 31/315 (9%)
Query: 57 LRSKFKPLTST-LHSVV--DSSDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPG 113
LRS+ K + L ++ S+D T K L++L + VE V + P
Sbjct: 55 LRSRLKTIAQIDLPEIIIEKKSEDGTKKWLLRLTDANCVETVFI--------------PE 100
Query: 114 GPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRL---------SNIR 164
R TLC+SSQVGC + C+FC+T GF NL+ EI+ Q+ A R +
Sbjct: 101 RGRGTLCVSSQVGCALNCSFCSTAQQGFNRNLTVAEIIGQVWLAVRCLSRDSLRHDHTVS 160
Query: 165 NVVFMGMGEPLNNYAALVEAVRIMTG-LPFQVSPKRITVSTVGIVHAINKFHSDLPGLNL 223
N+V MGMGEPL N+ ++V+A+ +M + S +R+T+ST G+V A+ + S ++L
Sbjct: 161 NIVMMGMGEPLLNFDSVVKAMNLMMDDFGYGFSKRRVTLSTSGVVPALRRL-SKASEVSL 219
Query: 224 AVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEY-QKNSQQKIFIEYIMLDGVNDEEQHA 282
A+SLHAP ++R +++P + +PL +L+ + Y + ++++ +EY+ML+G+ND+ +HA
Sbjct: 220 AISLHAPNDELRDRLVPINKKYPLSELLEVCRNYFRSEHRRRVTMEYVMLEGINDQPEHA 279
Query: 283 HQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQD 342
QL K+LE V +NLIPFNP +++R SS + F+ IL + + T RK G+D
Sbjct: 280 RQLIKILEGIPVKINLIPFNPF-PFARYRRSSQITIERFKSILVKA-GLNTITRKTRGED 337
Query: 343 ISGACGQLVVNLPDK 357
I ACGQLV + D+
Sbjct: 338 IDAACGQLVGYVHDR 352
>gi|21282830|ref|NP_645918.1| ribosomal RNA large subunit methyltransferase N [Staphylococcus
aureus subsp. aureus MW2]
gi|49486057|ref|YP_043278.1| ribosomal RNA large subunit methyltransferase N [Staphylococcus
aureus subsp. aureus MSSA476]
gi|300912218|ref|ZP_07129661.1| cfr family radical SAM enzyme [Staphylococcus aureus subsp. aureus
TCH70]
gi|418934120|ref|ZP_13487943.1| 23S rRNA methyltransferase [Staphylococcus aureus subsp. aureus
CIGC128]
gi|418988039|ref|ZP_13535712.1| 23S rRNA methyltransferase [Staphylococcus aureus subsp. aureus
CIG1835]
gi|448742276|ref|ZP_21724226.1| ribosomal RNA large subunit methyltransferase N [Staphylococcus
aureus KT/314250]
gi|81649432|sp|Q6G9Z5.1|RLMN_STAAS RecName: Full=Probable dual-specificity RNA methyltransferase RlmN;
AltName: Full=23S rRNA
(adenine(2503)-C(2))-methyltransferase; AltName:
Full=23S rRNA m2A2503 methyltransferase; AltName:
Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=tRNA (adenine(37)-C(2))-methyltransferase;
AltName: Full=tRNA m2A37 methyltransferase
gi|81762575|sp|Q8NX16.1|RLMN_STAAW RecName: Full=Probable dual-specificity RNA methyltransferase RlmN;
AltName: Full=23S rRNA
(adenine(2503)-C(2))-methyltransferase; AltName:
Full=23S rRNA m2A2503 methyltransferase; AltName:
Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=tRNA (adenine(37)-C(2))-methyltransferase;
AltName: Full=tRNA m2A37 methyltransferase
gi|21204269|dbj|BAB94966.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
MW2]
gi|49244500|emb|CAG42929.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
MSSA476]
gi|300886464|gb|EFK81666.1| cfr family radical SAM enzyme [Staphylococcus aureus subsp. aureus
TCH70]
gi|377719827|gb|EHT43997.1| 23S rRNA methyltransferase [Staphylococcus aureus subsp. aureus
CIG1835]
gi|377770863|gb|EHT94622.1| 23S rRNA methyltransferase [Staphylococcus aureus subsp. aureus
CIGC128]
gi|445546991|gb|ELY15267.1| ribosomal RNA large subunit methyltransferase N [Staphylococcus
aureus KT/314250]
Length = 364
Score = 196 bits (497), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 110/313 (35%), Positives = 174/313 (55%), Gaps = 23/313 (7%)
Query: 44 DEFPSLPSAAYSLLRSKFKPLTSTLHSVVDSSDDVTTKLLVKLQNGGFVEAVIMRYDSSL 103
DE +L LL+ F T T +S D T K L +LQ+G +E V+MR+D
Sbjct: 59 DEMTNLSKDLRQLLKDNFTVTTLTTVVKQESKDG-TIKFLYELQDGYTIETVLMRHDYG- 116
Query: 104 GKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRL--- 160
+++C+++QVGC++GC FCA+ G K NL +GEIV Q++ +
Sbjct: 117 -------------NSVCVTTQVGCRIGCTFCASTLGGLKRNLEAGEIVSQVLTVQKALDA 163
Query: 161 --SNIRNVVFMGMGEPLNNYAALVEAVRIMTGL-PFQVSPKRITVSTVGIVHAINKFHSD 217
+ +V MG+GEP NY +++ +RI+ + + ITVST GI+ I F +
Sbjct: 164 TEERVSQIVIMGIGEPFENYDEMMDFLRIVNDDNSLNIGARHITVSTSGIIPRIYDFADE 223
Query: 218 LPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVND 277
+N AVSLHA +VR ++MP RA+ +EKL+ A++ YQ+ + +++ EY + GVND
Sbjct: 224 DIQINFAVSLHAAKDEVRSRLMPINRAYNVEKLIEAIQYYQEKTNRRVTFEYGLFGGVND 283
Query: 278 EEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRK 337
+ +HA +L L++ VNLIP N + + +T+ +D + F+K L+ I T+R+
Sbjct: 284 QLEHARELAHLIKGLNCHVNLIPVNHVPERNYVKTAKND-IFKFEKELK-RLGINATIRR 341
Query: 338 QMGQDISGACGQL 350
+ G DI ACGQL
Sbjct: 342 EQGSDIDAACGQL 354
>gi|418316082|ref|ZP_12927526.1| 23S rRNA m2A2503 methyltransferase [Staphylococcus aureus subsp.
aureus 21340]
gi|365241753|gb|EHM82488.1| 23S rRNA m2A2503 methyltransferase [Staphylococcus aureus subsp.
aureus 21340]
Length = 364
Score = 196 bits (497), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 110/313 (35%), Positives = 174/313 (55%), Gaps = 23/313 (7%)
Query: 44 DEFPSLPSAAYSLLRSKFKPLTSTLHSVVDSSDDVTTKLLVKLQNGGFVEAVIMRYDSSL 103
DE +L LL+ F T T +S D T K L +LQ+G +E V+MR+D
Sbjct: 59 DEMTNLSKDLRQLLKDNFTVTTLTTVVKQESKDG-TIKFLFELQDGYTIETVLMRHDYG- 116
Query: 104 GKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRL--- 160
+++C+++QVGC++GC FCA+ G K NL +GEIV Q++ +
Sbjct: 117 -------------NSVCVTTQVGCRIGCTFCASTLGGLKRNLEAGEIVSQVLTVQKALDV 163
Query: 161 --SNIRNVVFMGMGEPLNNYAALVEAVRIMTGL-PFQVSPKRITVSTVGIVHAINKFHSD 217
+ +V MG+GEP NY +++ +RI+ + + ITVST GI+ I F +
Sbjct: 164 TEERVSQIVIMGIGEPFENYDEMMDFLRIVNDDNSLNIGARHITVSTSGIIPRIYDFADE 223
Query: 218 LPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVND 277
+N AVSLHA +VR ++MP RA+ +EKL+ A++ YQ+ + +++ EY + GVND
Sbjct: 224 DIQINFAVSLHAAKDEVRSRLMPINRAYNVEKLIEAIQYYQEKTNRRVTFEYGLFGGVND 283
Query: 278 EEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRK 337
+ +HA +L L++ VNLIP N + + +T+ +D + F+K L+ I T+R+
Sbjct: 284 QLEHARELAHLIKGLNCHVNLIPVNHVPERNYVKTAKND-IFKFEKELK-RLGINATIRR 341
Query: 338 QMGQDISGACGQL 350
+ G DI ACGQL
Sbjct: 342 EQGSDIDAACGQL 354
>gi|21672555|ref|NP_660622.1| hypothetical protein BUsg275 [Buchnera aphidicola str. Sg
(Schizaphis graminum)]
gi|25091617|sp|Q8K9P5.1|RLMN_BUCAP RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|21623181|gb|AAM67833.1| hypothetical 43.1 kDa protein [Buchnera aphidicola str. Sg
(Schizaphis graminum)]
Length = 363
Score = 196 bits (497), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 105/258 (40%), Positives = 158/258 (61%), Gaps = 14/258 (5%)
Query: 112 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRL-------SNIR 164
P R+TLC+SSQ+GC + C FCATG GF NL EI+ Q+ A+++ S I
Sbjct: 107 PEKKRATLCVSSQIGCSLKCKFCATGQQGFNRNLKVSEIISQIWQANKILKEKKNNSTIT 166
Query: 165 NVVFMGMGEPLNNYAALVEAVRIMTGLP-FQVSPKRITVSTVGIVHAINKFHSDLPGLNL 223
N+VFMGMGEPL N ++ A++I+ F +S +RIT+ST GIV A+NK + ++L
Sbjct: 167 NIVFMGMGEPLLNLNNVISAIKIILDKNGFGLSKRRITLSTSGIVPALNKLIKKID-VSL 225
Query: 224 AVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQK---IFIEYIMLDGVNDEEQ 280
A+SLHAP +R IMP + ++ +N++ +Y K+S + +EY+ML G+ND +
Sbjct: 226 AISLHAPNDFIRNSIMPINMKYNIKSFLNSVSKYLKHSHANRGGVTVEYVMLRGINDLNE 285
Query: 281 HAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMG 340
HA +LG +L+ +NLIP+N + + F SS ++++ F ILR TT+RK G
Sbjct: 286 HAEELGNILKKIPSKINLIPWNFFKN-ANFICSSKNRINIFANILRKK-GFNTTIRKNRG 343
Query: 341 QDISGACGQLVVNLPDKI 358
QDI ACGQL ++ ++I
Sbjct: 344 QDIGAACGQLTGDIVNRI 361
>gi|424787257|ref|ZP_18214025.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
intermedius BA1]
gi|422114020|gb|EKU17738.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
intermedius BA1]
Length = 360
Score = 196 bits (497), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 118/349 (33%), Positives = 190/349 (54%), Gaps = 34/349 (9%)
Query: 19 EKAGIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKF--KPLTSTLHSVVDSSD 76
E G K+ IW+++ + E ++ + L +F PL +V S
Sbjct: 18 ESKGEKKFRATQIWEWLYRKRVQSFTEMTNISKDLLTKLDDEFVVNPLE---QRIVQESA 74
Query: 77 DVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCAT 136
D T K L +L +G +E V+MR L ++C+++QVGC +GC FCA+
Sbjct: 75 DGTVKYLFELPDGMLIETVLMRQHYGL--------------SVCVTTQVGCNIGCTFCAS 120
Query: 137 GTMGFKSNLSSGEIVEQLVHASRLSNIR-------NVVFMGMGEPLNNYAALVEAVRIMT 189
G + + +L++GEI+ Q++ + + R ++V MG+GEP +NY +++ VR +
Sbjct: 121 GLIKKQRDLNNGEIMSQIMLVQKYFDERGQGERVSHIVVMGIGEPFDNYDNVLKFVRTVN 180
Query: 190 ---GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFP 246
GL + + ITVST G+ H I F ++ +NLAVSLHAP D+R IM RAFP
Sbjct: 181 DDKGLA--IGARHITVSTSGLAHKIRDFANEGVQVNLAVSLHAPNNDLRSSIMKINRAFP 238
Query: 247 LEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVV--VNLIPFNPI 304
+EKL A++ Y + + +++ EYIML+ VND + A +L +LL+ + + VNLIP+NP+
Sbjct: 239 IEKLFAAIEYYIETTNRRVTFEYIMLNKVNDGVEQALELAELLKNIKKLSYVNLIPYNPV 298
Query: 305 GSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVN 353
Q+ S ++V +F L+ + + VR++ G DI ACGQL N
Sbjct: 299 SEHDQYSRSPKERVMAFYDTLKKN-GVNCVVRQEHGTDIDAACGQLRSN 346
>gi|372268286|ref|ZP_09504334.1| radical SAM enzyme, Cfr family protein [Alteromonas sp. S89]
Length = 403
Score = 195 bits (496), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 117/354 (33%), Positives = 199/354 (56%), Gaps = 33/354 (9%)
Query: 18 FEKAGIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHSVVDSSDD 77
F G K+ + K++ +N ++++ ++ A + L + + +DS+D
Sbjct: 49 FAGLGEKRFRAVQVLKWIHQNGVDDFEQMTNVSKAMRAKLSEIAEVRAPKVLKQMDSADG 108
Query: 78 VTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATG 137
T K L+++ G +E V + P G R TLC+SSQVGC + C+FCATG
Sbjct: 109 -TRKWLIEVTGGNVIETVYI--------------PDGDRGTLCVSSQVGCSLDCSFCATG 153
Query: 138 TMGFKSNLSSGEIVEQLVHASRL---------SNIRNVVFMGMGEPLNNYAALVEAVRI- 187
GF +L++ EI+ Q+ A + + NVV MGMGEPL N+ +V+++ +
Sbjct: 154 KQGFNRDLTAAEIIGQVWIACKSFGQLQPNGPRKVTNVVMMGMGEPLLNFDNVVDSMNLM 213
Query: 188 MTGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPL 247
M + +S +R+T+ST G+V A+++ +++ ++LA+SLHAP ++R +++P + +P+
Sbjct: 214 MEDNAYGISKRRVTLSTSGVVPALDRL-AEVTDVSLAISLHAPNDELRNELVPINKKYPI 272
Query: 248 EKLMNALKEYQKN---SQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPI 304
L+++ + Y +N + +K+ IEY M+ VND +HAHQL +LL V +NLIPFNP
Sbjct: 273 AMLLDSAQRYIENMPDNHRKMTIEYTMIREVNDRPEHAHQLAELLRDVPVKINLIPFNPF 332
Query: 305 GSVSQFRTSSDDKVSSFQKI-LRGSYNIRTTVRKQMGQDISGACGQLVVNLPDK 357
+S ++ S++ + FQ+I L Y + TVR G DI ACGQL + D+
Sbjct: 333 -ELSDYQRVSNNALRRFQQILLDKGYTV--TVRTTRGDDIDAACGQLAGQVNDR 383
>gi|365108779|ref|ZP_09336577.1| ribosomal RNA large subunit methyltransferase N [Citrobacter
freundii 4_7_47CFAA]
gi|363640248|gb|EHL79739.1| ribosomal RNA large subunit methyltransferase N [Citrobacter
freundii 4_7_47CFAA]
Length = 336
Score = 195 bits (496), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 107/259 (41%), Positives = 155/259 (59%), Gaps = 16/259 (6%)
Query: 112 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN--------- 162
P R+TLC+SSQVGC + C FC+T GF NL EI+ Q+ A+++
Sbjct: 62 PEDDRATLCVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVGAVKATGVRP 121
Query: 163 IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 221
I NVV MGMGEPL N +V A+ IM F +S +R+T+ST G+V A++K D+ +
Sbjct: 122 ITNVVMMGMGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDV 180
Query: 222 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDE 278
LA+SLHAP ++R +I+P + + +E + A++ Y + S Q ++ IEY+MLD +ND
Sbjct: 181 ALAISLHAPNDEIRDEIVPINKKYNIETFLGAVRRYLEKSNANQGRVTIEYVMLDHINDG 240
Query: 279 EQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQ 338
+HAHQL +LL+ +NLIP+NP R SS+ ++ F K+L SY T VRK
Sbjct: 241 TEHAHQLAELLKDTPCKINLIPWNPFPGAPYGR-SSNSRIDRFSKVLM-SYGFTTIVRKT 298
Query: 339 MGQDISGACGQLVVNLPDK 357
G DI ACGQL ++ D+
Sbjct: 299 RGDDIDAACGQLAGDVIDR 317
>gi|335029275|ref|ZP_08522783.1| 23S rRNA m2A2503 methyltransferase [Streptococcus infantis SK1076]
gi|334269088|gb|EGL87517.1| 23S rRNA m2A2503 methyltransferase [Streptococcus infantis SK1076]
Length = 361
Score = 195 bits (496), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 119/359 (33%), Positives = 191/359 (53%), Gaps = 30/359 (8%)
Query: 20 KAGIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKF--KPLTSTLHSVVDSSDD 77
+ G K+ IW+++ ++E +L + L +F PL +V S D
Sbjct: 19 EQGEKKFRADQIWEWLYRKRVQTFEEMTNLSKDLIAKLNDQFVVNPLK---QRIVQESAD 75
Query: 78 VTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATG 137
T K L +L +G +E V+MR L ++C+++QVGC +GC FCA+G
Sbjct: 76 GTVKYLFELPDGMLIETVLMRQHYGL--------------SVCVTTQVGCNIGCTFCASG 121
Query: 138 TMGFKSNLSSGEIVEQLVHASRLSNIR-------NVVFMGMGEPLNNYAALVEAVR-IMT 189
+ + +L++GEIV Q++ + + R ++V MG+GEP +NY ++ +R I
Sbjct: 122 LIKKQRDLNNGEIVAQIMLVQKYFDERGQDERVSHIVVMGIGEPFDNYNNVLNFIRTIND 181
Query: 190 GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEK 249
+ + ITVST G+ H I F ++ +NLAVSLHAP ++R IM RAFP+EK
Sbjct: 182 DKGMAIGARHITVSTSGLAHKIRDFANEGVQVNLAVSLHAPNNELRSSIMKINRAFPIEK 241
Query: 250 LMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVV--VNLIPFNPIGSV 307
L A++ Y + + +++ EYIML+ VND + A +L +LL+ + + VNLIP+NP+
Sbjct: 242 LFAAIEYYIETTNRRVTFEYIMLNEVNDGVEQALELAELLKNIKKLSYVNLIPYNPVSEH 301
Query: 308 SQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDKISAKSTPPV 366
Q+ S ++V +F L+ I VR++ G DI ACGQL N + K+ V
Sbjct: 302 DQYSRSPKERVMAFYDTLKKK-GINCVVRQEHGTDIDAACGQLRSNTMKRDRQKAVAEV 359
>gi|418321623|ref|ZP_12932962.1| 23S rRNA m2A2503 methyltransferase [Staphylococcus aureus subsp.
aureus VCU006]
gi|418875153|ref|ZP_13429413.1| 23S rRNA methyltransferase [Staphylococcus aureus subsp. aureus
CIGC93]
gi|365224238|gb|EHM65503.1| 23S rRNA m2A2503 methyltransferase [Staphylococcus aureus subsp.
aureus VCU006]
gi|377770213|gb|EHT93975.1| 23S rRNA methyltransferase [Staphylococcus aureus subsp. aureus
CIGC93]
Length = 364
Score = 195 bits (496), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 110/313 (35%), Positives = 174/313 (55%), Gaps = 23/313 (7%)
Query: 44 DEFPSLPSAAYSLLRSKFKPLTSTLHSVVDSSDDVTTKLLVKLQNGGFVEAVIMRYDSSL 103
DE +L LL+ F T T +S D T K L +LQ+G +E V+MR+D
Sbjct: 59 DEMTNLSKDLRQLLKDNFTVTTLTTVVKQESKDG-TIKFLFELQDGYTIETVLMRHDYG- 116
Query: 104 GKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRL--- 160
+++C+++QVGC++GC FCA+ G K NL +GEIV Q++ +
Sbjct: 117 -------------NSVCVTTQVGCRIGCTFCASTLGGLKRNLEAGEIVSQVLTVQKALDA 163
Query: 161 --SNIRNVVFMGMGEPLNNYAALVEAVRIMTGL-PFQVSPKRITVSTVGIVHAINKFHSD 217
+ +V MG+GEP NY +++ +RI+ + + ITVST GI+ I F +
Sbjct: 164 TEERVSQIVIMGIGEPFENYDEMMDFLRIVNDDNSLNIGARHITVSTSGIIPRIYDFADE 223
Query: 218 LPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVND 277
+N AVSLHA +VR ++MP RA+ +EKL+ A++ YQ+ + +++ EY + GVND
Sbjct: 224 NIQINFAVSLHAAKDEVRSRLMPINRAYNVEKLIEAIQYYQEKTNRRVTFEYGLFGGVND 283
Query: 278 EEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRK 337
+ +HA +L L++ VNLIP N + + +T+ +D + F+K L+ I T+R+
Sbjct: 284 QLEHARELAHLIKGLNCHVNLIPVNHVPERNYVKTAKND-IFKFEKELK-RLGINATIRR 341
Query: 338 QMGQDISGACGQL 350
+ G DI ACGQL
Sbjct: 342 EQGSDIDAACGQL 354
>gi|416124379|ref|ZP_11595375.1| radical SAM superfamily protein [Staphylococcus epidermidis FRI909]
gi|319401489|gb|EFV89699.1| radical SAM superfamily protein [Staphylococcus epidermidis FRI909]
Length = 364
Score = 195 bits (496), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 107/313 (34%), Positives = 171/313 (54%), Gaps = 23/313 (7%)
Query: 44 DEFPSLPSAAYSLLRSKFKPLTSTLHSVVDSSDDVTTKLLVKLQNGGFVEAVIMRYDSSL 103
DE +L L+ F +T+ V S D T K L +LQ+G +E V+MR++
Sbjct: 59 DEMTNLSKELRQTLKDHF-AMTTLTTVVKQESKDGTIKFLFELQDGYTIETVLMRHEYG- 116
Query: 104 GKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRL--- 160
+++C+++QVGC++GC FCA+ G K NL +GEIV Q++ +
Sbjct: 117 -------------NSVCVTTQVGCRIGCTFCASTLGGLKRNLEAGEIVSQVLTVQKALDE 163
Query: 161 --SNIRNVVFMGMGEPLNNYAALVEAVRIMTGL-PFQVSPKRITVSTVGIVHAINKFHSD 217
+ +V MG+GEP NY +++ +RI+ + + ITVST GI+ I F +
Sbjct: 164 TNERVSQIVIMGIGEPFENYDEMMDFLRIVNDDNSLNIGARHITVSTSGIIPRIYDFAEE 223
Query: 218 LPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVND 277
+N AVSLH ++R ++MP RA+ ++KLM A++ YQ+ + +++ EY + GVND
Sbjct: 224 DIQINFAVSLHGAKDEIRSRLMPINRAYNVDKLMEAIRYYQEKTNRRVTFEYGLFGGVND 283
Query: 278 EEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRK 337
+ +HA L L++ VNLIP N + + +T DD + F+K L+ I T+R+
Sbjct: 284 QLEHARDLAHLIKDLNCHVNLIPVNHVPERNYVKTPKDD-IFKFEKELK-RLGINATIRR 341
Query: 338 QMGQDISGACGQL 350
+ G DI ACGQL
Sbjct: 342 EQGSDIDAACGQL 354
>gi|229916075|ref|YP_002884721.1| radical SAM enzyme, Cfr family [Exiguobacterium sp. AT1b]
gi|229467504|gb|ACQ69276.1| radical SAM enzyme, Cfr family [Exiguobacterium sp. AT1b]
Length = 353
Score = 195 bits (496), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 107/286 (37%), Positives = 169/286 (59%), Gaps = 29/286 (10%)
Query: 77 DVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCAT 136
D T K L+KL +G ++E V+MR+ KY ++C+++QVGC +GC+FCA+
Sbjct: 74 DGTVKFLLKLHDGHYIETVLMRH-----KYG---------RSVCVTTQVGCNIGCSFCAS 119
Query: 137 GTMGFKSNLSSGEIVEQLVHASRL-------SNIRNVVFMGMGEPLNNYAALVE---AVR 186
G + +L++GE+VEQ++ + ++V MG+GEP +N+ LV+ V+
Sbjct: 120 GLLKKTRDLTAGEVVEQIMTVQHFLDEEGEGDRVSHIVVMGIGEPFDNFDNLVDFLLVVK 179
Query: 187 IMTGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFP 246
GL ++P++I VST G+ I KF +NLA+SLHAP ++R +IM RAFP
Sbjct: 180 DERGLA--IAPRKINVSTSGLADKIYKFADLDLRINLALSLHAPNDELRTRIMKINRAFP 237
Query: 247 LEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETF--QVVVNLIPFNPI 304
L+KLM +++ Y + + ++I EYI+L VND +HA +L L+E + VNLIP+NP+
Sbjct: 238 LDKLMPSIRYYVEKTNKRITFEYILLSKVNDLPEHAEELADLIEDIKDKSYVNLIPYNPV 297
Query: 305 GSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 350
Q+ S+ + + +F IL+ + T VR + G DI ACGQL
Sbjct: 298 NEHIQYERSTPEDIMAFYDILKKR-GVNTGVRLEHGTDIDAACGQL 342
>gi|392428290|ref|YP_006469301.1| Fe-S cluster redox enzyme [Streptococcus intermedius JTH08]
gi|419777665|ref|ZP_14303575.1| 23S rRNA m2A2503 methyltransferase [Streptococcus intermedius SK54]
gi|383844689|gb|EID82101.1| 23S rRNA m2A2503 methyltransferase [Streptococcus intermedius SK54]
gi|391757436|dbj|BAM23053.1| Fe-S cluster redox enzyme [Streptococcus intermedius JTH08]
Length = 360
Score = 195 bits (496), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 118/349 (33%), Positives = 190/349 (54%), Gaps = 34/349 (9%)
Query: 19 EKAGIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKF--KPLTSTLHSVVDSSD 76
E G K+ IW+++ + E ++ + L +F PL +V S
Sbjct: 18 ESKGEKKFRATQIWEWLYRKRVQSFTEMTNISKDLLTKLDDEFVVNPLE---QRIVQESA 74
Query: 77 DVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCAT 136
D T K L +L +G +E V+MR L ++C+++QVGC +GC FCA+
Sbjct: 75 DGTVKYLFELPDGMLIETVLMRQHYGL--------------SVCVTTQVGCNIGCTFCAS 120
Query: 137 GTMGFKSNLSSGEIVEQLVHASRLSNIR-------NVVFMGMGEPLNNYAALVEAVRIMT 189
G + + +L++GEI+ Q++ + + R ++V MG+GEP +NY +++ VR +
Sbjct: 121 GLIKKQRDLNNGEIMSQIMLVQKYFDERGQGERVSHIVVMGIGEPFDNYDNVLKFVRTVN 180
Query: 190 ---GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFP 246
GL + + ITVST G+ H I F ++ +NLAVSLHAP D+R IM RAFP
Sbjct: 181 DDKGLA--IGARHITVSTSGLAHKIRDFANEGVQVNLAVSLHAPNNDLRSSIMKINRAFP 238
Query: 247 LEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVV--VNLIPFNPI 304
+EKL A++ Y + + +++ EYIML+ VND + A +L +LL+ + + VNLIP+NP+
Sbjct: 239 IEKLFAAIEYYIETTNRRVTFEYIMLNKVNDGVEQALELAELLKNIKKLSYVNLIPYNPV 298
Query: 305 GSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVN 353
Q+ S ++V +F L+ + + VR++ G DI ACGQL N
Sbjct: 299 SEHDQYSRSPKERVMAFYDTLKKN-GVNCVVRQEHGTDIDAACGQLRSN 346
>gi|296117650|ref|ZP_06836234.1| radical SAM enzyme, Cfr family [Corynebacterium ammoniagenes DSM
20306]
gi|295969381|gb|EFG82622.1| radical SAM enzyme, Cfr family [Corynebacterium ammoniagenes DSM
20306]
Length = 367
Score = 195 bits (496), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 118/320 (36%), Positives = 178/320 (55%), Gaps = 27/320 (8%)
Query: 44 DEFPSLPSAAYSLLRSKFKPLTSTLHSVVDSSDDVTTKLLVKLQNGGFVEAVIMRYDSSL 103
DE +P +A ++ KF P T + D TTK L +L +G +E+V+MRY
Sbjct: 62 DEMTDIPESARKDIQEKFFPPLMTQIRGFSTDDGETTKSLWRLHDGTLLESVLMRY---- 117
Query: 104 GKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRL--- 160
PG R+TLCISSQ GC M C FCATG G NLS+ EIVEQL +AS+
Sbjct: 118 --------PG--RATLCISSQAGCGMACPFCATGQGGLDRNLSAAEIVEQLRNASKTMEA 167
Query: 161 --SNIRNVVFMGMGEPLNNYAALVEAVRIMTGLP-FQVSPKRITVSTVGIVHAINKFHSD 217
+ NVVFMGMGEPL NY +V AV+ T F +S + +T+STVG+ A+ K +
Sbjct: 168 EGGRLTNVVFMGMGEPLANYKRVVHAVKQFTDPDGFGMSMRNVTISTVGLAPAVRKLADE 227
Query: 218 LPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVND 277
LA+SLH P + R +++P + + ++++++A + Y + +++ IEY ++ ND
Sbjct: 228 GLSCTLAISLHTPDDEFRNELVPVNQRWDVDEILDAARYYVDKTSRRVSIEYALIRDKND 287
Query: 278 EEQHAHQLGKLLETF---QVVVNLIPFNPIGSVSQFRTSSDDKVSSF-QKILRGSYNIRT 333
++ A LG+ L +V VNLIP NP S++ S ++ F ++++ + +
Sbjct: 288 QDFRADMLGQKLHKVLGSKVHVNLIPLNPTPG-SEWDASPKERQEEFVRRVI--AQGVPC 344
Query: 334 TVRKQMGQDISGACGQLVVN 353
TVR GQ+I+ ACGQL
Sbjct: 345 TVRDTKGQEIAAACGQLAAE 364
>gi|254283024|ref|ZP_04957992.1| radical SAM enzyme, Cfr family [gamma proteobacterium NOR51-B]
gi|219679227|gb|EED35576.1| radical SAM enzyme, Cfr family [gamma proteobacterium NOR51-B]
Length = 380
Score = 195 bits (496), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 111/296 (37%), Positives = 174/296 (58%), Gaps = 30/296 (10%)
Query: 75 SDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFC 134
S D T K +++ G VEAV++ P G R+TLC+SSQVGC + C FC
Sbjct: 87 SADGTRKWAIRVDGGALVEAVLI--------------PEGSRATLCVSSQVGCSLDCKFC 132
Query: 135 ATGTMGFKSNLSSGEIVEQLVHASRLSN---------IRNVVFMGMGEPLNNYAALVEAV 185
+TG GF+ +L+S EI+ Q+ A + + + NVV MGMGEPL N+ +V ++
Sbjct: 133 STGKQGFQRDLTSAEIIGQVWLAIKSYDAFQSGKGRVVTNVVMMGMGEPLLNFDNVVSSM 192
Query: 186 RIMT-GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARA 244
+MT + +S +R+T+ST G+V A++K ++ ++LA+SLH P ++R +I+P +
Sbjct: 193 SLMTDDWAYGLSKRRVTLSTSGVVPALDKL-AECSDVSLAISLHGPTDEIRNRIVPINKR 251
Query: 245 FPLEKLMNALKEY---QKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPF 301
+P+ +L+ + + Y Q ++++ + IEY +L GVND+ +HA QL LL+ F +NLIPF
Sbjct: 252 YPIAELLRSARNYIDAQSDTKRVVTIEYTLLAGVNDQVEHARQLAVLLKDFPCKINLIPF 311
Query: 302 NPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDK 357
N S F S + VS F ++L + + TVR G DI ACGQLV + D+
Sbjct: 312 NDFPH-SGFTRPSGNAVSRFWQVLIDAGYV-VTVRTTRGDDIDAACGQLVGEVVDR 365
>gi|420199004|ref|ZP_14704688.1| 23S rRNA m2A2503 methyltransferase [Staphylococcus epidermidis
NIHLM031]
gi|394272690|gb|EJE17140.1| 23S rRNA m2A2503 methyltransferase [Staphylococcus epidermidis
NIHLM031]
Length = 364
Score = 195 bits (496), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 107/313 (34%), Positives = 171/313 (54%), Gaps = 23/313 (7%)
Query: 44 DEFPSLPSAAYSLLRSKFKPLTSTLHSVVDSSDDVTTKLLVKLQNGGFVEAVIMRYDSSL 103
DE +L L+ F +T+ V S D T K L +LQ+G +E V+MR++
Sbjct: 59 DEMTNLSKELRQTLKDHF-AMTTLTTVVKQESKDGTIKFLFELQDGYTIETVLMRHEYG- 116
Query: 104 GKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRL--- 160
+++C+++QVGC++GC FCA+ G K NL +GEIV Q++ +
Sbjct: 117 -------------NSVCVTTQVGCRIGCTFCASTLGGLKRNLEAGEIVSQVLTVQKALDE 163
Query: 161 --SNIRNVVFMGMGEPLNNYAALVEAVRIMTGL-PFQVSPKRITVSTVGIVHAINKFHSD 217
+ +V MG+GEP NY +++ +RI+ + + ITVST GI+ I F +
Sbjct: 164 TNERVSQIVIMGIGEPFENYDEMMDFLRIVNDDNSLNIGARHITVSTSGIIPRIYDFAEE 223
Query: 218 LPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVND 277
+N AVSLH ++R ++MP RA+ ++KLM A++ YQ+ + +++ EY + GVND
Sbjct: 224 DIQINFAVSLHGAKDEIRSRLMPINRAYNVDKLMEAIRYYQEKTNRRVTFEYGLFGGVND 283
Query: 278 EEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRK 337
+ +HA L L++ VNLIP N + + +T DD + F+K L+ I T+R+
Sbjct: 284 QLEHARNLAHLIKDLNCHVNLIPVNHVPERNYVKTPKDD-IFKFEKELK-RLGINATIRR 341
Query: 338 QMGQDISGACGQL 350
+ G DI ACGQL
Sbjct: 342 EQGSDIDAACGQL 354
>gi|383934221|ref|ZP_09987663.1| 23S rRNA (adenine2503-C2)-methyltransferase [Rheinheimera
nanhaiensis E407-8]
gi|383704677|dbj|GAB57754.1| 23S rRNA (adenine2503-C2)-methyltransferase [Rheinheimera
nanhaiensis E407-8]
Length = 375
Score = 195 bits (496), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 127/363 (34%), Positives = 193/363 (53%), Gaps = 41/363 (11%)
Query: 17 EFEKAGIKQHFIPLIWKYVIENPNCEW------DEFPSLPSAAYSLLRSKFKPLTSTLHS 70
+ +A ++ F+ L K + +W D+F + S +LR K K
Sbjct: 12 DLTRAQMQAFFVELGEKPFRADQVMKWIYHFCIDDFDKM-SNINKVLREKLKARCVIEAP 70
Query: 71 VV----DSSDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVG 126
VV DSSD T K ++ L G VE V + P R TLC+SSQVG
Sbjct: 71 VVVTRQDSSDG-TIKFVMGLSGGQEVETVWI--------------PEKDRRTLCVSSQVG 115
Query: 127 CKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRL---------SNIRNVVFMGMGEPLNN 177
C + C+FC+T GF NL+ EI+ Q+ ++L + NVV MGMGEPL N
Sbjct: 116 CALDCSFCSTAQQGFNRNLTVAEIIGQVWRVAQLIGSYGDTGDKPVTNVVMMGMGEPLLN 175
Query: 178 YAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRC 236
+V A+ +M F +S +R+T+ST G+V A++ + + LA+SLHAP ++R
Sbjct: 176 LNNVVPAMELMLEDFGFGLSKRRVTLSTSGVVPALDLLREKI-DVALAISLHAPNNELRN 234
Query: 237 QIMPAARAFPLEKLMNALKEYQKNSQ--QKIFIEYIMLDGVNDEEQHAHQLGKLLETFQV 294
+++P R +P+E+ + A + Y NS+ K+ +EY+ML+GVND + AH+L + L+
Sbjct: 235 ELVPVNRKYPMEEFLAASRRYVANSKANDKVTVEYVMLEGVNDSMEQAHELAQALKDTPS 294
Query: 295 VVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNL 354
+NLIPFNP S ++ SS+ ++ F K+L+ Y VRK G DI ACGQLV ++
Sbjct: 295 KINLIPFNPYPG-SPYKRSSNSRIDRFNKVLQ-EYGFTVIVRKTRGDDIDAACGQLVGDV 352
Query: 355 PDK 357
D+
Sbjct: 353 IDR 355
>gi|206890968|ref|YP_002247985.1| radical SAM protein [Thermodesulfovibrio yellowstonii DSM 11347]
gi|206742906|gb|ACI21963.1| radical SAM enzyme, Cfr family [Thermodesulfovibrio yellowstonii
DSM 11347]
Length = 342
Score = 195 bits (496), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 109/286 (38%), Positives = 161/286 (56%), Gaps = 22/286 (7%)
Query: 75 SDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFC 134
S D T K L +L++G +E+V++ R TLC+SSQVGC + C FC
Sbjct: 74 SIDGTIKFLWELEDGEKIESVLI--------------SDKDRLTLCVSSQVGCMLKCKFC 119
Query: 135 ATGTMGFKSNLSSGEIVEQLVHASRL-----SNIRNVVFMGMGEPLNNYAALVEAVRIMT 189
TG +G K NL + EIV+Q + S++ I N+VFMGMGEPL N+ +VEA+ +
Sbjct: 120 LTGKIGLKRNLKAWEIVDQYIQVSKIIQKENRKITNIVFMGMGEPLLNFENVVEALWRLK 179
Query: 190 GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEK 249
L SP RIT+ST GI+ AI + P + LA+SL+A R +MP + +PL +
Sbjct: 180 DLIL-FSPSRITLSTAGIIPAIKELPYKAPAIKLAISLNATDNKTRSYLMPINKKYPLHE 238
Query: 250 LMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQ 309
L+ L++Y + +I EYI++ G+N E+ A++L +LL+ +NLIPFNP +
Sbjct: 239 LIKTLRDYPLKPRHRITFEYILIKGINCSEKDAYRLSELLKGIPSKINLIPFNPWEG-CE 297
Query: 310 FRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLP 355
F D+++ +FQ+IL + +RK G DI ACGQL P
Sbjct: 298 FERPEDNEILNFQEIL-AARGYSVFIRKSKGTDILAACGQLKALYP 342
>gi|449459924|ref|XP_004147696.1| PREDICTED: probable dual-specificity RNA methyltransferase
RlmN-like [Cucumis sativus]
Length = 425
Score = 195 bits (496), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 129/326 (39%), Positives = 184/326 (56%), Gaps = 20/326 (6%)
Query: 30 LIWKYVIENPNCEWDEFPSLP-SAAYSLLRSKFKPLTSTLHSVVDSSDDVTTKLLVKLQN 88
LI+K ++ E +EF +LP L + ++ S ++ V ++D T KLL+KL +
Sbjct: 80 LIYKRKVK----EVEEFTNLPLKFRTDLQEAGWRVGRSPVYQSVTAADG-TVKLLLKLDD 134
Query: 89 GGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSG 148
+E V + + K G R T CISSQVGC + C+FCATG GF NL
Sbjct: 135 NRLIETVGIPVEDKNNK-------GSVRLTACISSQVGCPLRCSFCATGKGGFSRNLQRH 187
Query: 149 EIVEQLVHASRLSNIR--NVVFMGMGEPLNNYAALVEAVRIMTGLPFQVSPKRITVSTVG 206
EIVEQ+ + N R NVVFMGMGEP+ N +++EA R + Q+ + IT+STVG
Sbjct: 188 EIVEQVFAIEDIFNHRVTNVVFMGMGEPMLNMKSVLEAHRCLNK-DVQIGQRMITISTVG 246
Query: 207 IVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIF 266
+ + I + S LAVSLHAP Q +R I+P+A+A+PLE LM ++Y + +++
Sbjct: 247 VPNTIQRLASHKLQSTLAVSLHAPNQKLRETIVPSAKAYPLEALMKDCRDYFLQTSRRVS 306
Query: 267 IEYIMLDGVNDEEQHAHQLGKLLETF--QVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKI 324
EY +L GVND +HA +L KLL + VNLIPFNPI S+++ V +F
Sbjct: 307 FEYALLAGVNDAVEHAVELAKLLHEWGGGYHVNLIPFNPIEG-SEYQRPYKKAVMAFVAA 365
Query: 325 LRGSYNIRTTVRKQMGQDISGACGQL 350
L S+ I +VR+ G D + ACGQL
Sbjct: 366 LE-SHKITVSVRQTRGLDANAACGQL 390
>gi|408528984|emb|CCK27158.1| Ribosomal RNA large subunit methyltransferase N [Streptomyces
davawensis JCM 4913]
Length = 368
Score = 195 bits (496), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 115/325 (35%), Positives = 174/325 (53%), Gaps = 33/325 (10%)
Query: 44 DEFPSLPSAAYSLLRSKFKPLTSTLHSVVDSSDDVTTKLLVKLQNGGFVEAVIMRYDSSL 103
+++ +P+ A LR + P T+ + + T K L +L +G VE+V+MRY
Sbjct: 60 EQWTDIPAGARGKLREELFPELMTVVRHLSTDQGTTRKTLWRLFDGTLVESVLMRYPD-- 117
Query: 104 GKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRL--- 160
R T+CISSQ GC M C FCATG G NLS+ EIV Q+V R
Sbjct: 118 ------------RVTMCISSQAGCGMNCPFCATGQAGLDRNLSTAEIVHQIVDGMRALRD 165
Query: 161 -------SNIRNVVFMGMGEPLNNYAALVEAVRIMT-----GLPFQVSPKRITVSTVGIV 208
+ + N+VFMGMGEPL NY +V ++R +T GL +S + ITVSTVG+V
Sbjct: 166 GDVPGGPARLSNIVFMGMGEPLANYNRVVGSIRRLTDPEPDGL--GLSQRGITVSTVGLV 223
Query: 209 HAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIE 268
AI++F + LA+SLHAP ++R ++P + + ++++A EY S +++ IE
Sbjct: 224 PAIHRFSDEGFKCRLAISLHAPDDELRDTLVPVNTRWKVREVLDAGFEYSAKSGRRLSIE 283
Query: 269 YIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGS 328
Y ++ +ND+ +LG+LL V VNLIP NP + +D+ + + I +
Sbjct: 284 YALIRDINDQAWRGDRLGRLLRGKPVHVNLIPLNPTPGSKWTASRPEDEKAFVEAI--AA 341
Query: 329 YNIRTTVRKQMGQDISGACGQLVVN 353
+ + T+R GQ+I GACGQL
Sbjct: 342 HGVPVTIRDTRGQEIDGACGQLAAT 366
>gi|357237068|ref|ZP_09124411.1| putative ribosomal RNA large subunit methyltransferase N
[Streptococcus criceti HS-6]
gi|356885050|gb|EHI75250.1| putative ribosomal RNA large subunit methyltransferase N
[Streptococcus criceti HS-6]
Length = 371
Score = 195 bits (496), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 113/346 (32%), Positives = 191/346 (55%), Gaps = 34/346 (9%)
Query: 22 GIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKF--KPLTSTLHSVVDSSDDVT 79
G K+ IW ++ + ++E ++ ++L+ F PL +V S D T
Sbjct: 34 GEKKFRATQIWDWLYKKRVQSFEEMTNISKDFIAVLKENFDFNPLK---QRIVQESADGT 90
Query: 80 TKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTM 139
K L +L +G +E V+MR L ++C+++QVGC +GC FCA+G +
Sbjct: 91 IKYLFELPDGMLIETVLMRQHYGL--------------SVCVTTQVGCNIGCTFCASGLI 136
Query: 140 GFKSNLSSGEIVEQLVHASRL-------SNIRNVVFMGMGEPLNNYAALVEAVRIMT--- 189
+ +L++GEI Q++ + + +VV MG+GEP +NY ++ +R +
Sbjct: 137 KKQRDLNNGEITAQIMLVQKYLDDQGQGERVSHVVVMGIGEPFDNYDNVICFLRTINDDN 196
Query: 190 GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEK 249
GL + + ITVST G+ H I F ++ +NLAVSLHAP ++R IM R+FPLEK
Sbjct: 197 GLA--IGARHITVSTSGLAHKIRDFANEGIQVNLAVSLHAPNNELRSSIMRINRSFPLEK 254
Query: 250 LMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVV--VNLIPFNPIGSV 307
L +A++ Y + + +++ EYIML+ VND ++A +L L ++ + + +NLIP+NP+
Sbjct: 255 LFDAIEYYIETTNRRVTFEYIMLNEVNDSPENAQELADLTKSIRKLSYINLIPYNPVSEH 314
Query: 308 SQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVN 353
Q+ S+ ++V +F +L+ + + VR++ G DI ACGQL N
Sbjct: 315 DQYSRSTKERVDAFYDVLKKN-GVNCVVRQEHGTDIDAACGQLRSN 359
>gi|317121759|ref|YP_004101762.1| 23S rRNA m(2)A-2503 methyltransferase [Thermaerobacter marianensis
DSM 12885]
gi|315591739|gb|ADU51035.1| 23S rRNA m(2)A-2503 methyltransferase [Thermaerobacter marianensis
DSM 12885]
Length = 448
Score = 195 bits (496), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 114/317 (35%), Positives = 174/317 (54%), Gaps = 32/317 (10%)
Query: 45 EFPSLPSAAYSLLRSKFKPLTSTLHSVVDSSDDVTTKLLVKLQNGGFVEAVIMRYDSSLG 104
E LP L + P+ + + D T K L++L++G +E V+MR+ L
Sbjct: 140 EMTDLPKDLRRRLEALGDPVVPAVRRLQVDPQDGTRKYLLELEDGQLIETVLMRHRYGL- 198
Query: 105 KYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLV-----HASR 159
+LC+SSQVGC MGC FCA+ G NL++ E+ QL+ A R
Sbjct: 199 -------------SLCVSSQVGCAMGCRFCASTLGGLVRNLTAAEMAGQLLVVNRDLAER 245
Query: 160 LSNIRNVVFMGMGEPLNNYAALVEAVRIM-----TGLPFQVSPKRITVSTVGIVHAINKF 214
+ +VV MG+GEPL N A ++ +R+ G+ + + +TVST G+V I +
Sbjct: 246 GQRVSHVVVMGIGEPLQNLDATLQFLRVAHHPQGAGISY----RHMTVSTSGLVPRIRQL 301
Query: 215 -HSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLD 273
H+ LP + LAVSLHAP +R +MP R +P+ +LM+A +EY + + ++I EY++++
Sbjct: 302 AHAGLP-ITLAVSLHAPNDALRSWLMPVNRRWPIAELMDACREYVERTGRRITFEYVLIE 360
Query: 274 GVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRT 333
VND +HA +L L+ VNLIP+NP+ S FR S ++V +F LR +
Sbjct: 361 DVNDRPEHAAELADLVAGLNGHVNLIPWNPV-SERPFRAPSPERVQAFVAALR-RRGVNV 418
Query: 334 TVRKQMGQDISGACGQL 350
TVR+++GQ I ACGQL
Sbjct: 419 TVRRELGQRIEAACGQL 435
>gi|429105680|ref|ZP_19167549.1| Ribosomal RNA large subunit methyltransferase N [Cronobacter
malonaticus 681]
gi|429111265|ref|ZP_19173035.1| Ribosomal RNA large subunit methyltransferase N [Cronobacter
malonaticus 507]
gi|426292403|emb|CCJ93662.1| Ribosomal RNA large subunit methyltransferase N [Cronobacter
malonaticus 681]
gi|426312422|emb|CCJ99148.1| Ribosomal RNA large subunit methyltransferase N [Cronobacter
malonaticus 507]
Length = 388
Score = 195 bits (496), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 108/259 (41%), Positives = 155/259 (59%), Gaps = 16/259 (6%)
Query: 112 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN--------- 162
P R+TLC+SSQVGC + C FC+T GF NL EI+ Q+ A+++
Sbjct: 114 PEDDRATLCVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIGAAKVTGQRP 173
Query: 163 IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 221
I NVV MGMGEPL N +V A+ IM F +S +R+T+ST G+V A++K D+ +
Sbjct: 174 ITNVVMMGMGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDV 232
Query: 222 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDE 278
LA+SLHAP ++R +I+P + + +E ++A++ Y S Q ++ IEY+MLD VND
Sbjct: 233 ALAISLHAPNDEIRDEIVPINKKYNIETFLSAVRRYLDKSNANQGRVTIEYVMLDHVNDG 292
Query: 279 EQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQ 338
+HAHQL +LL+ +NLIP+NP R SS+ ++ F K+L SY T VRK
Sbjct: 293 TEHAHQLAELLKDTPCKINLIPWNPFPGAPYGR-SSNSRIDRFSKVLM-SYGFTTIVRKT 350
Query: 339 MGQDISGACGQLVVNLPDK 357
G DI ACGQL ++ D+
Sbjct: 351 RGDDIDAACGQLAGDVIDR 369
>gi|307708474|ref|ZP_07644939.1| radical SAM enzyme, Cfr family [Streptococcus mitis NCTC 12261]
gi|307615390|gb|EFN94598.1| radical SAM enzyme, Cfr family [Streptococcus mitis NCTC 12261]
Length = 361
Score = 195 bits (496), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 119/359 (33%), Positives = 191/359 (53%), Gaps = 30/359 (8%)
Query: 20 KAGIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKF--KPLTSTLHSVVDSSDD 77
+ G K+ IW+++ ++E +L + L +F PL +V S D
Sbjct: 19 EQGEKKFRADQIWEWLYRKRVQSFEEMTNLSKDLIAKLNEQFVVNPLK---QRIVQESAD 75
Query: 78 VTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATG 137
T K L +L +G +E V+MR L ++C+++QVGC +GC FCA+G
Sbjct: 76 GTVKYLFELPDGMLIETVLMRQHYGL--------------SVCVTTQVGCNIGCTFCASG 121
Query: 138 TMGFKSNLSSGEIVEQLVHASRLSNIR-------NVVFMGMGEPLNNYAALVEAVR-IMT 189
+ + +L++GEIV Q++ + + R ++V MG+GEP +NY ++ VR I
Sbjct: 122 LIKKQRDLNNGEIVAQIMLVQKYFDERGQDERVSHIVVMGIGEPFDNYNNVLNFVRTIND 181
Query: 190 GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEK 249
+ + ITVST G+ H I F ++ +NLAVSLHAP ++R IM RAFP+EK
Sbjct: 182 DKGMAIGARHITVSTSGLAHKIRDFANEGVQVNLAVSLHAPNNELRSSIMKINRAFPIEK 241
Query: 250 LMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVV--VNLIPFNPIGSV 307
L A++ Y + + +++ EYIML+ VND + A +L +LL+ + + VNLIP+NP+
Sbjct: 242 LFAAIEYYIETTNRRVTFEYIMLNEVNDGVEQALELAELLKNIKKLSYVNLIPYNPVSEH 301
Query: 308 SQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDKISAKSTPPV 366
Q+ S ++V +F L+ + VR++ G DI ACGQL N + K+ V
Sbjct: 302 DQYSRSPKERVLAFYDTLKKK-GVNCVVRQEHGTDIDAACGQLRSNTMKRDRQKAVAAV 359
>gi|418920295|ref|ZP_13474228.1| 23S rRNA methyltransferase [Staphylococcus aureus subsp. aureus
CIGC348]
gi|418993834|ref|ZP_13541471.1| 23S rRNA methyltransferase [Staphylococcus aureus subsp. aureus
CIG290]
gi|377746993|gb|EHT70963.1| 23S rRNA methyltransferase [Staphylococcus aureus subsp. aureus
CIG290]
gi|377765654|gb|EHT89503.1| 23S rRNA methyltransferase [Staphylococcus aureus subsp. aureus
CIGC348]
Length = 336
Score = 195 bits (496), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 110/313 (35%), Positives = 174/313 (55%), Gaps = 23/313 (7%)
Query: 44 DEFPSLPSAAYSLLRSKFKPLTSTLHSVVDSSDDVTTKLLVKLQNGGFVEAVIMRYDSSL 103
DE +L LL+ F T T +S D T K L +LQ+G +E V+MR+D
Sbjct: 31 DEMTNLSKDLRQLLKDNFTVTTLTTVVKQESKDG-TIKFLFELQDGYTIETVLMRHDYG- 88
Query: 104 GKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRL--- 160
+++C+++QVGC++GC FCA+ G K NL +GEIV Q++ +
Sbjct: 89 -------------NSVCVTTQVGCRIGCTFCASTLGGLKRNLEAGEIVSQVLTVQKALDA 135
Query: 161 --SNIRNVVFMGMGEPLNNYAALVEAVRIMTGL-PFQVSPKRITVSTVGIVHAINKFHSD 217
+ +V MG+GEP NY +++ +RI+ + + ITVST GI+ I F +
Sbjct: 136 TEERVSQIVIMGIGEPFENYDEMMDFLRIVNDDNSLNIGARHITVSTSGIIPRIYDFADE 195
Query: 218 LPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVND 277
+N AVSLHA +VR ++MP RA+ +EKL+ A++ YQ+ + +++ EY + GVND
Sbjct: 196 DIQINFAVSLHAAKDEVRSRLMPINRAYNVEKLIEAIQYYQEKTNRRVTFEYGLFGGVND 255
Query: 278 EEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRK 337
+ +HA +L L++ VNLIP N + + +T+ +D + F+K L+ I T+R+
Sbjct: 256 QLEHARELAHLIKGLNCHVNLIPVNHVPERNYVKTAKND-IFKFEKELK-RLGINATIRR 313
Query: 338 QMGQDISGACGQL 350
+ G DI ACGQL
Sbjct: 314 EQGSDIDAACGQL 326
>gi|417934072|ref|ZP_12577392.1| 23S rRNA m2A2503 methyltransferase [Streptococcus mitis bv. 2 str.
F0392]
gi|340770642|gb|EGR93157.1| 23S rRNA m2A2503 methyltransferase [Streptococcus mitis bv. 2 str.
F0392]
Length = 361
Score = 195 bits (496), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 120/359 (33%), Positives = 190/359 (52%), Gaps = 30/359 (8%)
Query: 20 KAGIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKF--KPLTSTLHSVVDSSDD 77
+ G K+ IW+++ ++E +L L +F PL +V S D
Sbjct: 19 EQGEKKFRADQIWEWLYRKRVQSFEEMTNLSKDLIVKLNEQFVVNPLK---QRIVQESAD 75
Query: 78 VTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATG 137
T K L +L +G +E V+MR L ++C+++QVGC +GC FCA+G
Sbjct: 76 GTVKYLFELPDGMLIETVLMRQHYGL--------------SVCVTTQVGCNIGCTFCASG 121
Query: 138 TMGFKSNLSSGEIVEQLVHASRLSNIR-------NVVFMGMGEPLNNYAALVEAVR-IMT 189
+ + +L++GEIV Q++ + + R ++V MG+GEP +NY ++ VR I
Sbjct: 122 LIKKQRDLNNGEIVAQIMLVQKYFDERGQDERVSHIVVMGIGEPFDNYNNVLNFVRTIND 181
Query: 190 GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEK 249
+ + ITVST G+ H I F ++ +NLAVSLHAP ++R IM RAFP+EK
Sbjct: 182 DKGMAIGARHITVSTSGLAHKIRDFANEGVQVNLAVSLHAPNNELRSSIMKINRAFPIEK 241
Query: 250 LMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVV--VNLIPFNPIGSV 307
L A++ Y + + +++ EYIML+ VND + A +L +LL+ + + VNLIP+NP+
Sbjct: 242 LFAAIEYYIETTNRRVTFEYIMLNEVNDGVEQALELAELLKNIKKLSYVNLIPYNPVSEH 301
Query: 308 SQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDKISAKSTPPV 366
Q+ S ++V +F L+ I VR++ G DI ACGQL N + K+ V
Sbjct: 302 DQYSRSPKERVMAFYDTLKKK-GINCVVRQEHGTDIDAACGQLRSNTMKRDRQKAVAAV 359
>gi|50122145|ref|YP_051312.1| ribosomal RNA large subunit methyltransferase N [Pectobacterium
atrosepticum SCRI1043]
gi|81644326|sp|Q6D273.1|RLMN_ERWCT RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|49612671|emb|CAG76121.1| conserved hypothetical protein [Pectobacterium atrosepticum
SCRI1043]
Length = 398
Score = 195 bits (496), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 107/259 (41%), Positives = 153/259 (59%), Gaps = 16/259 (6%)
Query: 112 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN--------- 162
P R+TLC+SSQVGC + C FC+T GF NL EI+ Q+ A+++
Sbjct: 124 PEEERATLCVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIGAFKVTGQRP 183
Query: 163 IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 221
I NVV MGMGEPL N +V A+ IM F +S +R+T+ST G+V A++K D+ +
Sbjct: 184 ITNVVMMGMGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDV 242
Query: 222 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDE 278
LA+SLHAP D+R +IMP + + +E ++A++ Y + S Q ++ +EY+MLD +ND
Sbjct: 243 ALAISLHAPTDDIRNEIMPINKKYNIEMFLSAVRRYLEKSNANQGRVTVEYVMLDHINDG 302
Query: 279 EQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQ 338
+HAHQL + L+ +NLIP+NP R SS+ +V F K+L Y T VRK
Sbjct: 303 TEHAHQLAECLKDTPCKINLIPWNPFPGAPYGR-SSNSRVDRFSKVLM-EYGFTTIVRKT 360
Query: 339 MGQDISGACGQLVVNLPDK 357
G DI ACGQL + D+
Sbjct: 361 RGDDIDAACGQLAGEVVDR 379
>gi|297202671|ref|ZP_06920068.1| ribosomal RNA large subunit methyltransferase N [Streptomyces
sviceus ATCC 29083]
gi|197713246|gb|EDY57280.1| ribosomal RNA large subunit methyltransferase N [Streptomyces
sviceus ATCC 29083]
Length = 368
Score = 195 bits (496), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 112/322 (34%), Positives = 172/322 (53%), Gaps = 29/322 (9%)
Query: 45 EFPSLPSAAYSLLRSKFKPLTSTLHSVVDSSDDVTTKLLVKLQNGGFVEAVIMRYDSSLG 104
E+ +P+ A L+ P T+ + + T K L +L +G VE+V+MRY
Sbjct: 61 EWTDIPAGARGKLQEALLPELMTVVRHLSTDQGTTRKTLWRLFDGTLVESVLMRYPD--- 117
Query: 105 KYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRL---- 160
R T+CISSQ GC M C FCATG G NLS+ EIV Q+V R
Sbjct: 118 -----------RVTMCISSQAGCGMNCPFCATGQAGLDRNLSTAEIVHQIVDGMRALRDG 166
Query: 161 ------SNIRNVVFMGMGEPLNNYAALVEAVRIMTGLP---FQVSPKRITVSTVGIVHAI 211
+ + N+VFMGMGEPL NY + +++R +T +S + ITVSTVG+V AI
Sbjct: 167 EVPGGPARLSNIVFMGMGEPLANYKRVTQSIRALTDPAPDGLGLSQRGITVSTVGLVPAI 226
Query: 212 NKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIM 271
++F + LA+SLHAP ++R ++P + + ++++A EY + S +++ IEY +
Sbjct: 227 HRFSDEGFKCRLAISLHAPDDELRDTLVPVNTRWKVREVLDAGFEYVEKSGRRLSIEYAL 286
Query: 272 LDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNI 331
+ +ND+ +LG+LL+ V VNLIP NP + +D+ + + I ++ +
Sbjct: 287 IRDINDQAWRGDRLGRLLKGKPVHVNLIPLNPTPGSKWTASRPEDEKAFVEAI--AAHGV 344
Query: 332 RTTVRKQMGQDISGACGQLVVN 353
T+R GQ+I GACGQL
Sbjct: 345 AVTIRDTRGQEIDGACGQLAAT 366
>gi|186684082|ref|YP_001867278.1| ribosomal RNA large subunit methyltransferase N [Nostoc punctiforme
PCC 73102]
gi|205829792|sp|B2J6D0.1|RLMN_NOSP7 RecName: Full=Probable dual-specificity RNA methyltransferase RlmN;
AltName: Full=23S rRNA
(adenine(2503)-C(2))-methyltransferase; AltName:
Full=23S rRNA m2A2503 methyltransferase; AltName:
Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=tRNA (adenine(37)-C(2))-methyltransferase;
AltName: Full=tRNA m2A37 methyltransferase
gi|186466534|gb|ACC82335.1| radical SAM enzyme, Cfr family [Nostoc punctiforme PCC 73102]
Length = 364
Score = 195 bits (496), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 113/289 (39%), Positives = 172/289 (59%), Gaps = 16/289 (5%)
Query: 66 STLHSVVDSSDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRS--TLCISS 123
STLH + D T K L++L +G +E V G R GP++ T+C+S+
Sbjct: 83 STLH-YRSVAPDGTVKYLLRLTDGQIIETV--------GIPTFAERGEGPKARLTVCVST 133
Query: 124 QVGCKMGCNFCATGTMGFKSNLSSGEIVEQL--VHASRLSNIRNVVFMGMGEPLNNYAAL 181
QVGC M C+FCATG G+K NL+ EI++Q+ V + NVVFMG+GEPL N +
Sbjct: 134 QVGCPMACDFCATGKGGYKRNLARHEIIDQVLTVQEDFQQRVSNVVFMGLGEPLLNTENV 193
Query: 182 VEAVRIMTGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPA 241
+ A++ + + + +TVSTVGI I +F + + LAVSLHAP Q +R +++P+
Sbjct: 194 LAALKSLNQ-DIGIGQRSLTVSTVGIRDRIRQFAQNNLQITLAVSLHAPNQALREKLIPS 252
Query: 242 ARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPF 301
ARA+PLE+L+ +EY + + +++ EY++L GVND +HA +L K + FQ VNLIP+
Sbjct: 253 ARAYPLEELLAECREYVEITGRRVTFEYVLLAGVNDLPEHALELSKCMRGFQSHVNLIPY 312
Query: 302 NPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 350
NPI V ++ + D++ +F +L+ N +VR G + ACGQL
Sbjct: 313 NPIQEVD-YKRPNRDRIEAFVNVLK-QQNTAVSVRYSRGLEADAACGQL 359
>gi|449524008|ref|XP_004169015.1| PREDICTED: probable dual-specificity RNA methyltransferase
RlmN-like [Cucumis sativus]
Length = 422
Score = 195 bits (496), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 129/326 (39%), Positives = 184/326 (56%), Gaps = 20/326 (6%)
Query: 30 LIWKYVIENPNCEWDEFPSLP-SAAYSLLRSKFKPLTSTLHSVVDSSDDVTTKLLVKLQN 88
LI+K ++ E +EF +LP L + ++ S ++ V ++D T KLL+KL +
Sbjct: 80 LIYKRKVK----EVEEFTNLPLKFRTDLQEAGWRVGRSPVYQSVTAADG-TVKLLLKLDD 134
Query: 89 GGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSG 148
+E V + + K G R T CISSQVGC + C+FCATG GF NL
Sbjct: 135 SRLIETVGIPVEDKNNK-------GSVRLTACISSQVGCPLRCSFCATGKGGFSRNLQRH 187
Query: 149 EIVEQLVHASRLSNIR--NVVFMGMGEPLNNYAALVEAVRIMTGLPFQVSPKRITVSTVG 206
EIVEQ+ + N R NVVFMGMGEP+ N +++EA R + Q+ + IT+STVG
Sbjct: 188 EIVEQVFAIEDIFNHRVTNVVFMGMGEPMLNMKSVLEAHRCLNK-DVQIGQRMITISTVG 246
Query: 207 IVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIF 266
+ + I + S LAVSLHAP Q +R I+P+A+A+PLE LM ++Y + +++
Sbjct: 247 VPNTIQRLASHKLQSTLAVSLHAPNQKLRETIVPSAKAYPLEALMKDCRDYFLQTSRRVS 306
Query: 267 IEYIMLDGVNDEEQHAHQLGKLLETF--QVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKI 324
EY +L GVND +HA +L KLL + VNLIPFNPI S+++ V +F
Sbjct: 307 FEYALLAGVNDAVEHAVELAKLLHEWGGGYHVNLIPFNPIEG-SEYQRPYKKAVMAFVAA 365
Query: 325 LRGSYNIRTTVRKQMGQDISGACGQL 350
L S+ I +VR+ G D + ACGQL
Sbjct: 366 LE-SHKITVSVRQTRGLDANAACGQL 390
>gi|429087664|ref|ZP_19150396.1| Ribosomal RNA large subunit methyltransferase N [Cronobacter
universalis NCTC 9529]
gi|426507467|emb|CCK15508.1| Ribosomal RNA large subunit methyltransferase N [Cronobacter
universalis NCTC 9529]
Length = 388
Score = 195 bits (496), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 108/259 (41%), Positives = 155/259 (59%), Gaps = 16/259 (6%)
Query: 112 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN--------- 162
P R+TLC+SSQVGC + C FC+T GF NL EI+ Q+ A+++
Sbjct: 114 PEDDRATLCVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIGAAKVTGQRP 173
Query: 163 IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 221
I NVV MGMGEPL N +V A+ IM F +S +R+T+ST G+V A++K D+ +
Sbjct: 174 ITNVVMMGMGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDV 232
Query: 222 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDE 278
LA+SLHAP ++R +I+P + + +E ++A++ Y S Q ++ IEY+MLD VND
Sbjct: 233 ALAISLHAPNDEIRDEIVPINKKYNIETFLSAVRRYLDKSNANQGRVTIEYVMLDHVNDG 292
Query: 279 EQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQ 338
+HAHQL +LL+ +NLIP+NP R SS+ ++ F K+L SY T VRK
Sbjct: 293 TEHAHQLAELLKDTPCKINLIPWNPFPGAPYGR-SSNSRIDRFSKVLM-SYGFTTIVRKT 350
Query: 339 MGQDISGACGQLVVNLPDK 357
G DI ACGQL ++ D+
Sbjct: 351 RGDDIDAACGQLAGDVIDR 369
>gi|385870746|gb|AFI89266.1| Ribosomal RNA large subunit methyltransferase N [Pectobacterium sp.
SCC3193]
Length = 400
Score = 195 bits (496), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 107/259 (41%), Positives = 153/259 (59%), Gaps = 16/259 (6%)
Query: 112 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN--------- 162
P R+TLC+SSQVGC + C FC+T GF NL EI+ Q+ A+++
Sbjct: 126 PEEDRATLCVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIGAFKVTGQRP 185
Query: 163 IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 221
I NVV MGMGEPL N +V A+ IM F +S +R+T+ST G+V A++K D+ +
Sbjct: 186 ITNVVMMGMGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDV 244
Query: 222 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDE 278
LA+SLHAP D+R +IMP + + +E ++A++ Y + S Q ++ +EY+MLD +ND
Sbjct: 245 ALAISLHAPTDDIRNEIMPINKKYNIEMFLSAVRRYLEKSNANQGRVTVEYVMLDHINDG 304
Query: 279 EQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQ 338
+HAHQL + L+ +NLIP+NP R SS+ +V F K+L Y T VRK
Sbjct: 305 TEHAHQLAECLKDTPCKINLIPWNPFPGAPYGR-SSNSRVDRFSKVLM-EYGFTTIVRKT 362
Query: 339 MGQDISGACGQLVVNLPDK 357
G DI ACGQL + D+
Sbjct: 363 RGDDIDAACGQLAGEVVDR 381
>gi|326382905|ref|ZP_08204595.1| ribosomal RNA large subunit methyltransferase N [Gordonia
neofelifaecis NRRL B-59395]
gi|326198495|gb|EGD55679.1| ribosomal RNA large subunit methyltransferase N [Gordonia
neofelifaecis NRRL B-59395]
Length = 371
Score = 195 bits (496), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 119/329 (36%), Positives = 172/329 (52%), Gaps = 31/329 (9%)
Query: 40 NCEWDEFPSLPSAAYSLLRSKFKPLTSTLHSVVDSSDDVTTKLLVKLQNGGFVEAVIMRY 99
N + DE LP+ + K P T + DD T K L +L +G +E+V+MRY
Sbjct: 57 NADVDEMTDLPAGKRDAVGEKLFPTLMTPVRHISCDDDSTRKTLWRLHDGTLLESVLMRY 116
Query: 100 DSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASR 159
R+TLCISSQ GC M C FCATG G NLS+ EIV+Q+ A+R
Sbjct: 117 PE--------------RNTLCISSQAGCGMACPFCATGQGGLDRNLSTAEIVDQVRAAAR 162
Query: 160 L---------SNIRNVVFMGMGEPLNNYAALVEAVRIMTGLP---FQVSPKRITVSTVGI 207
+ N+VFMGMGEPL NY +V+AVR +T F +S + +TVSTVG+
Sbjct: 163 ALRDGEVGEPGRLSNIVFMGMGEPLANYKRVVDAVRKITSPSPDGFGISARSVTVSTVGL 222
Query: 208 VHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFI 267
AI + + + LAVSLH P ++R ++P + + +++ A + Y ++ +++ I
Sbjct: 223 APAIRRLADEGLSVTLAVSLHTPDDELRDTLVPVNNRWSVAEVLEAARYYADSTGRRVSI 282
Query: 268 EYIMLDGVNDEEQHAHQLGKLLETF---QVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKI 324
EY ++ VND+ A LGK L V VNLIP NP S++ S + F +
Sbjct: 283 EYALIRDVNDQPWRADLLGKKLRQALGSLVHVNLIPLNPTPG-SEWDASPKPVEAEFVRR 341
Query: 325 LRGSYNIRTTVRKQMGQDISGACGQLVVN 353
+R + + TVR GQ+I+ ACGQL
Sbjct: 342 VR-EHGVSCTVRDTRGQEIAAACGQLAAE 369
>gi|253689386|ref|YP_003018576.1| radical SAM enzyme, Cfr family [Pectobacterium carotovorum subsp.
carotovorum PC1]
gi|251755964|gb|ACT14040.1| radical SAM enzyme, Cfr family [Pectobacterium carotovorum subsp.
carotovorum PC1]
Length = 419
Score = 195 bits (496), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 107/259 (41%), Positives = 153/259 (59%), Gaps = 16/259 (6%)
Query: 112 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN--------- 162
P R+TLC+SSQVGC + C FC+T GF NL EI+ Q+ A+++
Sbjct: 145 PEEDRATLCVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIGAFKVTGQRP 204
Query: 163 IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 221
I NVV MGMGEPL N +V A+ IM F +S +R+T+ST G+V A++K D+ +
Sbjct: 205 ITNVVMMGMGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDV 263
Query: 222 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDE 278
LA+SLHAP D+R +IMP + + +E ++A++ Y + S Q ++ +EY+MLD +ND
Sbjct: 264 ALAISLHAPTDDIRNEIMPINKKYNIEMFLSAVRRYLEKSNANQGRVTVEYVMLDHINDG 323
Query: 279 EQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQ 338
+HAHQL + L+ +NLIP+NP R SS+ +V F K+L Y T VRK
Sbjct: 324 TEHAHQLAECLKDTPCKINLIPWNPFPGAPYGR-SSNSRVDRFSKVLM-EYGFTTIVRKT 381
Query: 339 MGQDISGACGQLVVNLPDK 357
G DI ACGQL + D+
Sbjct: 382 RGDDIDAACGQLAGEVVDR 400
>gi|401684850|ref|ZP_10816724.1| 23S rRNA m2A2503 methyltransferase [Streptococcus sp. BS35b]
gi|400184363|gb|EJO18607.1| 23S rRNA m2A2503 methyltransferase [Streptococcus sp. BS35b]
Length = 361
Score = 195 bits (496), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 119/359 (33%), Positives = 191/359 (53%), Gaps = 30/359 (8%)
Query: 20 KAGIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKF--KPLTSTLHSVVDSSDD 77
+ G K+ IW+++ ++E +L + L +F PL +V S D
Sbjct: 19 EQGEKKFRADQIWEWLYRKRVQSFEEMTNLSKDLIAKLNDQFVVNPLK---QRIVQESAD 75
Query: 78 VTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATG 137
T K L +L +G +E V+MR L ++C+++QVGC +GC FCA+G
Sbjct: 76 GTVKYLFELPDGMLIETVLMRQHYGL--------------SVCVTTQVGCNIGCTFCASG 121
Query: 138 TMGFKSNLSSGEIVEQLVHASRLSNIR-------NVVFMGMGEPLNNYAALVEAVR-IMT 189
+ + +L++GEIV Q++ + + R ++V MG+GEP +NY ++ VR I
Sbjct: 122 LIKKQRDLNNGEIVAQIMLVQKYFDERGQDERVSHIVVMGIGEPFDNYNNVLNFVRTIND 181
Query: 190 GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEK 249
+ + ITVST G+ H I F ++ +NLAVSLHAP ++R IM RAFP+EK
Sbjct: 182 DKGMAIGARHITVSTSGLAHKIRDFANEGVQVNLAVSLHAPNNELRSSIMKINRAFPIEK 241
Query: 250 LMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVV--VNLIPFNPIGSV 307
L A++ Y + + +++ EYIML+ VND + A +L +LL+ + + VNLIP+NP+
Sbjct: 242 LFAAIEYYIETTNRRVTFEYIMLNEVNDGVEQALELAELLKNVKKLSYVNLIPYNPVSEH 301
Query: 308 SQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDKISAKSTPPV 366
Q+ S ++V +F L+ + VR++ G DI ACGQL N + K+ V
Sbjct: 302 DQYSRSPKERVMAFYDTLKKK-GVNCVVRQEHGTDIDAACGQLRSNTMKRDRQKAVAAV 359
>gi|387930290|gb|AFK11687.1| ribosomal RNA large subunit methyltransferase [Gallibacterium
anatis]
Length = 372
Score = 195 bits (496), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 107/259 (41%), Positives = 157/259 (60%), Gaps = 16/259 (6%)
Query: 112 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN--------- 162
P R+TLC+SSQVGC + C FC+T GF NL+ EI+ Q+ AS++
Sbjct: 98 PEADRATLCVSSQVGCALACTFCSTAQQGFNRNLTVSEIIGQVWRASKVIGAFGETKVRP 157
Query: 163 IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 221
I NVV MGMGEPL N + +V A+ IM + +S +R+T+ST G+V A++K ++ +
Sbjct: 158 ITNVVMMGMGEPLLNVSNVVPAMEIMLDDFGYGLSKRRVTLSTSGVVPALDKL-GEMIDV 216
Query: 222 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQ---KIFIEYIMLDGVNDE 278
LA+SLHAP ++R +I+P + + +E LM+++ Y K S K+ IEY+MLD VNDE
Sbjct: 217 ALAISLHAPNDELRNEIVPLNKKYNIEMLMDSVNRYLKISNANHGKVTIEYVMLDHVNDE 276
Query: 279 EQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQ 338
+HAHQL K+L+ +NLIP+NP + + S++ ++ FQK L Y VRK
Sbjct: 277 VEHAHQLAKVLKNTPCKINLIPWNPFPE-APYNKSTNTRIDRFQKTLM-EYGFTVIVRKT 334
Query: 339 MGQDISGACGQLVVNLPDK 357
G DI ACGQL ++ D+
Sbjct: 335 RGDDIDAACGQLAGDVIDR 353
>gi|421080362|ref|ZP_15541296.1| Ribosomal RNA large subunit methyltransferase N [Pectobacterium
wasabiae CFBP 3304]
gi|401705215|gb|EJS95404.1| Ribosomal RNA large subunit methyltransferase N [Pectobacterium
wasabiae CFBP 3304]
Length = 400
Score = 195 bits (496), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 107/259 (41%), Positives = 153/259 (59%), Gaps = 16/259 (6%)
Query: 112 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN--------- 162
P R+TLC+SSQVGC + C FC+T GF NL EI+ Q+ A+++
Sbjct: 126 PEEDRATLCVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIGAFKVTGQRP 185
Query: 163 IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 221
I NVV MGMGEPL N +V A+ IM F +S +R+T+ST G+V A++K D+ +
Sbjct: 186 ITNVVMMGMGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDV 244
Query: 222 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDE 278
LA+SLHAP D+R +IMP + + +E ++A++ Y + S Q ++ +EY+MLD +ND
Sbjct: 245 ALAISLHAPTDDIRNEIMPINKKYNIEMFLSAVRRYLEKSNANQGRVTVEYVMLDHINDG 304
Query: 279 EQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQ 338
+HAHQL + L+ +NLIP+NP R SS+ +V F K+L Y T VRK
Sbjct: 305 TEHAHQLAECLKDTPCKINLIPWNPFPGAPYGR-SSNSRVDRFSKVLM-EYGFTTIVRKT 362
Query: 339 MGQDISGACGQLVVNLPDK 357
G DI ACGQL + D+
Sbjct: 363 RGDDIDAACGQLAGEVVDR 381
>gi|421873666|ref|ZP_16305278.1| radical SAM superfamily protein [Brevibacillus laterosporus GI-9]
gi|372457453|emb|CCF14827.1| radical SAM superfamily protein [Brevibacillus laterosporus GI-9]
Length = 356
Score = 195 bits (496), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 121/343 (35%), Positives = 182/343 (53%), Gaps = 31/343 (9%)
Query: 18 FEKAGIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKFK--PLTSTLHSVVDSS 75
E+ G K I+ ++ ++E +L A L +F+ LT H S
Sbjct: 25 LEENGEKAFRAAQIFDWLYVKRVTAFEEMSNLSKALRDKLNEEFRINALTEITHQ---ES 81
Query: 76 DDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCA 135
D T K L +L +G +E VIMR++ +++C+++QVGC++GC FCA
Sbjct: 82 ADGTIKFLFQLIDGHAIETVIMRHNYG--------------NSVCVTTQVGCRIGCTFCA 127
Query: 136 TGTMGFKSNLSSGEIVEQLVHASRL-----SNIRNVVFMGMGEPLNNYAALVEAVRIMT- 189
+ G K NL +GEIV Q++ A R + +VV MG+GEP N+ L+ + I+
Sbjct: 128 STLGGLKRNLDAGEIVAQVLQAQRALDADEGRVSHVVVMGIGEPFENFEPLLSFLNIIND 187
Query: 190 GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEK 249
+ + ITVST GIV I +F +NLA+SLHAP ++R ++MP R FPLEK
Sbjct: 188 NRGLNIGQRHITVSTSGIVPKIYEFAERGGQVNLAISLHAPNTELRTKLMPINRGFPLEK 247
Query: 250 LMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQ 309
LM A Y + ++I EY + G ND+ HA +L +L+ VNLIP N +
Sbjct: 248 LMEACHHYIAKTGRRISFEYGLFGGQNDQPHHAEELAELIGDMLCHVNLIPVNYVPERDY 307
Query: 310 FRTSSDDKVSSFQKIL--RGSYNIRTTVRKQMGQDISGACGQL 350
RT+ +D + +F++IL RG I T+R++ G DI+ ACGQL
Sbjct: 308 VRTAKND-IFTFKRILDDRG---INVTIRREHGSDIAAACGQL 346
>gi|452746471|ref|ZP_21946291.1| ribosomal RNA large subunit methyltransferase N [Pseudomonas
stutzeri NF13]
gi|452009724|gb|EME01937.1| ribosomal RNA large subunit methyltransferase N [Pseudomonas
stutzeri NF13]
Length = 382
Score = 195 bits (496), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 129/356 (36%), Positives = 194/356 (54%), Gaps = 38/356 (10%)
Query: 18 FEKAGIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHSVV---DS 74
FE G K+ + K++ ++D +L A LR K K V D
Sbjct: 22 FESIGEKRFRAGQVMKWIHHFGVDDFDAMSNLGKA----LREKLKACAEIRGPEVVSEDI 77
Query: 75 SDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFC 134
S D T K +V++ +G VE V + P G R TLC+SSQ GC + C+FC
Sbjct: 78 SSDGTRKWVVRVASGSCVETVYI--------------PQGGRGTLCVSSQAGCALDCSFC 123
Query: 135 ATGTMGFKSNLSSGEIVEQLVHASRL---------SNIRNVVFMGMGEPLNNYAALVEAV 185
+TG GF SNL++ E++ Q+ A++ I NVV MGMGEPL N+ +V A+
Sbjct: 124 STGKQGFNSNLTAAEVIGQVWIANKSFGSIPAKIDRAITNVVMMGMGEPLLNFDNVVAAM 183
Query: 186 RIMT-GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARA 244
+IM L + +S +++T+ST G+V I++ + + ++LA+SLHAP +R Q++P +
Sbjct: 184 QIMMDDLGYGISKRKVTLSTSGVVPMIDEL-AKVIDVSLALSLHAPNDALRDQLVPINKK 242
Query: 245 FPLEKLMNALKEYQKNSQQK--IFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFN 302
+PLE L+ A K Y +K + IEY +L G+ND+ +HA Q+ LL +NLIPFN
Sbjct: 243 YPLEMLLAACKGYISRLGEKRVLTIEYTLLKGINDQPEHAEQMIALLADIPCKINLIPFN 302
Query: 303 PIGSVSQFRTSSDDKVSSFQKIL-RGSYNIRTTVRKQMGQDISGACGQLVVNLPDK 357
P S + S++ + FQ IL +G +N+ TVR G+DI ACGQLV + D+
Sbjct: 303 PFPH-SGYERPSNNAIRRFQDILHKGGHNV--TVRTTRGEDIDAACGQLVGQVLDR 355
>gi|395235042|ref|ZP_10413262.1| ribosomal RNA large subunit methyltransferase N [Enterobacter sp.
Ag1]
gi|394730327|gb|EJF30185.1| ribosomal RNA large subunit methyltransferase N [Enterobacter sp.
Ag1]
Length = 387
Score = 195 bits (496), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 127/360 (35%), Positives = 189/360 (52%), Gaps = 38/360 (10%)
Query: 14 IRAEFEKAGIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHSVV- 72
+R F + G K + K++ + ++DE + +LR+K K + V
Sbjct: 31 LREFFAELGEKPFRADQVMKWMYHYCSDDFDEMTDI----NKVLRNKLKEIAEIRAPEVA 86
Query: 73 --DSSDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMG 130
S D T K +K+ + VE V + P R+TLC+SSQVGC +
Sbjct: 87 EEQRSADGTIKWAIKIADQ-LVETVYI--------------PEEDRATLCVSSQVGCALE 131
Query: 131 CNFCATGTMGFKSNLSSGEIVEQLVHASRLSN---------IRNVVFMGMGEPLNNYAAL 181
C FC+T GF NL EI+ Q+ A+++ I NVV MGMGEPL N +
Sbjct: 132 CKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIGAQKKTGVRPITNVVMMGMGEPLLNLNNV 191
Query: 182 VEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMP 240
V A+ IM F +S +R+T+ST G+V A++K D+ + LA+SLHAP D+R +IMP
Sbjct: 192 VPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDVALAISLHAPTDDIRDEIMP 250
Query: 241 AARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVN 297
+ + +E + A++ Y + S Q ++ +EY++LD VND +HAHQL + L+ +N
Sbjct: 251 INKKYNIETFLAAVRRYLEKSNANQGRVTVEYVLLDHVNDGTEHAHQLAECLKDTPCKIN 310
Query: 298 LIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDK 357
LIP+NP R SS+ ++ F K+L SY T VRK G DI ACGQL + D+
Sbjct: 311 LIPWNPFPGAPYGR-SSNSRIDRFSKVLM-SYGFTTIVRKTRGDDIDAACGQLAGEVIDR 368
>gi|387133113|ref|YP_006299085.1| 2-vinyl bacteriochlorophyllide hydratase [Prevotella intermedia 17]
gi|386375961|gb|AFJ09378.1| 23S rRNA m2A2503 methyltransferase [Prevotella intermedia 17]
Length = 346
Score = 195 bits (496), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 111/308 (36%), Positives = 168/308 (54%), Gaps = 19/308 (6%)
Query: 44 DEFPSLPSAAYSLLRSKFKPLTSTLHSVVDSSDDVTTKLLVKLQNGGFVEAVIMRYDSSL 103
DE +L A L++ + + H S D T K L +G FVE+V +
Sbjct: 46 DEMTNLSKANREKLKAAY-TIGCKKHIDAQYSKDGTIKYLFPTDDGKFVESVYI------ 98
Query: 104 GKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSNI 163
P R+TLC+SSQVGCKM C FC TG GF+ NLS+ +I+ Q+ +
Sbjct: 99 --------PDEDRATLCVSSQVGCKMNCLFCQTGKQGFEGNLSATDILNQIYSLPEREKL 150
Query: 164 RNVVFMGMGEPLNNYAALVEAVRIMTG-LPFQVSPKRITVSTVGIVHAINKFHSDLPGLN 222
N+VFMG GEP++NY ++ +IMT + SPKRITVS++G+ + +F + +
Sbjct: 151 TNIVFMGQGEPMDNYENVLRTTQIMTADYGYAWSPKRITVSSIGVKTKLKRFLEE-SDCH 209
Query: 223 LAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHA 282
+A+S+H+P+ R +IMPA R + ++ L+ Y + Q+++ EYI+ GVND E+HA
Sbjct: 210 VAISMHSPIPAERAEIMPAERGMSIADIVELLRNYDFSHQRRLSFEYIVFKGVNDSERHA 269
Query: 283 HQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQD 342
++ KLL+ +NLI F+ I +V D K+ F+ L + + TT+R GQD
Sbjct: 270 KEIIKLLKGLDCRINLIRFHAIPNVP-LHGVDDKKMEEFRNYLT-QHGVFTTIRASRGQD 327
Query: 343 ISGACGQL 350
I ACG L
Sbjct: 328 IFAACGLL 335
>gi|331082368|ref|ZP_08331494.1| ribosomal RNA large subunit methyltransferase N [Lachnospiraceae
bacterium 6_1_63FAA]
gi|330400854|gb|EGG80455.1| ribosomal RNA large subunit methyltransferase N [Lachnospiraceae
bacterium 6_1_63FAA]
Length = 348
Score = 195 bits (496), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 117/331 (35%), Positives = 183/331 (55%), Gaps = 21/331 (6%)
Query: 31 IWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHSVVDSSDDVTTKLLVKLQNGG 90
I++++ + +DE +L +A L+ + T + V S D T K L L +G
Sbjct: 31 IYEWLHQKQAESFDEMSNLSAALREKLKERCVLTTLKMLEVQTSKIDGTQKYLFALPDGN 90
Query: 91 FVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEI 150
VE+V+M+Y +++CISSQVGCKMGC FCA+ G+ NL E+
Sbjct: 91 VVESVLMKYKHG--------------NSVCISSQVGCKMGCRFCASTIGGWTRNLLPSEM 136
Query: 151 VEQLVHASRLSNIR--NVVFMGMGEPLNNYAALVEAVRIMTGLP-FQVSPKRITVSTVGI 207
+EQ+ +LS R NVV MG GEPL+NY L++ +R++T +S + +TVST GI
Sbjct: 137 LEQIYRIQKLSGERVSNVVVMGTGEPLDNYDNLLQFIRLLTDENGLHISQRNVTVSTCGI 196
Query: 208 VHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFI 267
V + + + + LA+SLHA Q R ++MP A + + +++ A + Y + + +++
Sbjct: 197 VPKMYELAEENLQITLAISLHASNQAKRAELMPIANKYSINEVLEACRNYFEKTGRRLTF 256
Query: 268 EYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKV-SSFQKILR 326
EY ++ G ND ++ A +L L++ VNLIP NPI + SD KV +F+ L
Sbjct: 257 EYSLVGGKNDTKEDAEELAHLIKGLNCHVNLIPVNPIKERDYVQ--SDKKVIENFKNKLE 314
Query: 327 GSYNIRTTVRKQMGQDISGACGQLVVNLPDK 357
Y I T+R++MG+DI GACGQL + DK
Sbjct: 315 -KYQINVTIRREMGRDIDGACGQLRKSYIDK 344
>gi|420189610|ref|ZP_14695578.1| 23S rRNA m2A2503 methyltransferase [Staphylococcus epidermidis
NIHLM037]
gi|394260945|gb|EJE05747.1| 23S rRNA m2A2503 methyltransferase [Staphylococcus epidermidis
NIHLM037]
Length = 364
Score = 195 bits (496), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 107/313 (34%), Positives = 171/313 (54%), Gaps = 23/313 (7%)
Query: 44 DEFPSLPSAAYSLLRSKFKPLTSTLHSVVDSSDDVTTKLLVKLQNGGFVEAVIMRYDSSL 103
DE +L +L+ F +T+ V S D T K L +LQ+G +E V+MR++
Sbjct: 59 DEMTNLSKELRQILKDHF-AMTTLTTVVKQESKDGTIKFLFELQDGYTIETVLMRHEYG- 116
Query: 104 GKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRL--- 160
+++C+++QVGC++GC FCA+ G K NL +GEIV Q++ +
Sbjct: 117 -------------NSVCVTTQVGCRIGCTFCASTLGGLKRNLEAGEIVSQVLTVQKALDE 163
Query: 161 --SNIRNVVFMGMGEPLNNYAALVEAVRIMTGL-PFQVSPKRITVSTVGIVHAINKFHSD 217
+ +V MG+GEP NY ++ +RI+ + + ITVST GI+ I F +
Sbjct: 164 TNERVSQIVIMGIGEPFENYDETMDFLRIVNDDNSLNIGARHITVSTSGIIPRIYDFAEE 223
Query: 218 LPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVND 277
+N AVSLH ++R ++MP RA+ ++KLM A++ YQ+ + +++ EY + GVND
Sbjct: 224 DIQINFAVSLHGAKDEIRSRLMPINRAYNVDKLMEAIRYYQEKTNRRVTFEYGLFGGVND 283
Query: 278 EEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRK 337
+ +HA L L++ VNLIP N + + +T DD + F+K L+ I T+R+
Sbjct: 284 QLEHARDLAHLIKDLNCHVNLIPVNHVPERNYVKTPKDD-IFKFEKELK-RLGINATIRR 341
Query: 338 QMGQDISGACGQL 350
+ G DI ACGQL
Sbjct: 342 EQGSDIDAACGQL 354
>gi|379727602|ref|YP_005319787.1| ribosomal RNA large subunit methyltransferase N [Melissococcus
plutonius DAT561]
gi|376318505|dbj|BAL62292.1| ribosomal RNA large subunit methyltransferase N [Melissococcus
plutonius DAT561]
Length = 357
Score = 195 bits (496), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 117/345 (33%), Positives = 182/345 (52%), Gaps = 30/345 (8%)
Query: 18 FEKAGIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHSVVDSSDD 77
F + G K+ +W+++ +++ +L SLL F + +++ + D
Sbjct: 23 FLENGEKKFRANQVWEWLYIKRVESFEDMTNLSKTLISLLDQHF-VIPVLRQTIIQEAKD 81
Query: 78 VTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATG 137
T K L +L + +E V+MR + L ++C+++QVGC MGC FCA+G
Sbjct: 82 GTVKYLFELPDKNMIETVLMRQEYGL--------------SVCVTTQVGCNMGCTFCASG 127
Query: 138 TMGFKSNLSSGEIVEQLVHASRLSNIR-------NVVFMGMGEPLNNYAALVEAVRIMT- 189
+ NL++GEIV Q++ R + R +VV MG+GEP +NY L++ ++I+
Sbjct: 128 LLKKNRNLTAGEIVAQIMMVQRYFDQRKLGERVSHVVVMGIGEPFDNYEQLMQFIQIIND 187
Query: 190 --GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPL 247
GL + + +TVST G+V I KF +NLA+SLHA +R IM FP+
Sbjct: 188 EKGLA--IGARHLTVSTCGLVPQIKKFAQTGLQVNLAISLHASNNQIRSSIMRINHTFPI 245
Query: 248 EKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQ--VVVNLIPFNPIG 305
EKLM + EY + + +++ EYIML VND +HA +L LL+ + VNLIP+NP+
Sbjct: 246 EKLMQTIDEYIEQTNRRVTFEYIMLQKVNDYPEHAQELADLLKDKKKLAYVNLIPYNPVN 305
Query: 306 SVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 350
Q+ S V F IL+ + I +RK+ G DI ACGQL
Sbjct: 306 EHDQYCRSEKASVLKFYDILKKN-GINCVIRKEHGTDIDAACGQL 349
>gi|365134344|ref|ZP_09343223.1| 23S rRNA methyltransferase [Subdoligranulum sp. 4_3_54A2FAA]
gi|363614305|gb|EHL65802.1| 23S rRNA methyltransferase [Subdoligranulum sp. 4_3_54A2FAA]
Length = 346
Score = 195 bits (496), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 114/324 (35%), Positives = 183/324 (56%), Gaps = 22/324 (6%)
Query: 31 IWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHSVV-DSSDDVTTKLLVKLQNG 89
++K++ E + E P A + L +F TL + S D T K L +L +G
Sbjct: 31 LFKWLHEKQARSFSEMTDQPKAFLAALEERF--FIETLETERRQQSKDGTVKYLFRLPDG 88
Query: 90 GFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGE 149
+E V+MRY S G +T+C+S+QVGC+MGC FCA+ G NL++GE
Sbjct: 89 NCIETVLMRY--SYG------------NTVCVSTQVGCRMGCRFCASTQGGRVRNLTAGE 134
Query: 150 IVEQLVHASRLSNIR--NVVFMGMGEPLNNYAALVEAVRIMTGL-PFQVSPKRITVSTVG 206
I ++ A+R + R ++V MG+GEPL+N+ +++ + I++ + + I++ST G
Sbjct: 135 IANEVYAAARDTGERVSHIVLMGIGEPLDNFDHVMDFLSIISSPNGVNIGMRNISLSTCG 194
Query: 207 IVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIF 266
+V I K GL L+VSLHAP ++R +MP +P+E+L+ A ++YQ+ + +++
Sbjct: 195 LVPMIYKLAERHLGLTLSVSLHAPTDEMRSSMMPVNDVYPVEQLIRACRDYQQETGRRVS 254
Query: 267 IEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILR 326
EY M++GVND Q A +L +L++ VNLIP NP+ S + + V FQ +L
Sbjct: 255 FEYSMVNGVNDSPQTARRLAQLIKGMGAHVNLIPINPVDG-SPYSATDAANVKRFQTLLT 313
Query: 327 GSYNIRTTVRKQMGQDISGACGQL 350
+ TVR+++G DIS ACGQL
Sbjct: 314 -ELGVNATVRRRLGTDISAACGQL 336
>gi|443315063|ref|ZP_21044576.1| 23S rRNA m2A2503 methyltransferase [Leptolyngbya sp. PCC 6406]
gi|442785337|gb|ELR95164.1| 23S rRNA m2A2503 methyltransferase [Leptolyngbya sp. PCC 6406]
Length = 361
Score = 195 bits (496), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 112/276 (40%), Positives = 161/276 (58%), Gaps = 19/276 (6%)
Query: 77 DVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCAT 136
D T K L++L +G +EAV + P R T+C+SSQVGC M C+FCAT
Sbjct: 94 DGTVKYLLRLADGHIIEAVGI--------------PTAKRLTVCVSSQVGCPMACDFCAT 139
Query: 137 GTMGFKSNLSSGEIVEQL--VHASRLSNIRNVVFMGMGEPLNNYAALVEAVRIMTGLPFQ 194
G GF NL++ EIV+Q+ V + N+VFMGMGEPL N ++V A+R + G
Sbjct: 140 GKGGFARNLATHEIVDQVLTVQEDFGQRVSNIVFMGMGEPLLNTDSVVAAIRCLNG-DVG 198
Query: 195 VSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNAL 254
+S + IT+STVGI I + + LAVSLHA Q +R Q++P+ARA+PL L+
Sbjct: 199 ISQRAITLSTVGIPGRIRQLAEQHLQVTLAVSLHASNQGLREQLIPSARAYPLTALLTEC 258
Query: 255 KEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSS 314
++Y + +++ EYI+L G+ND +HA +L L+ FQ VNLIP+NPI V ++ S
Sbjct: 259 RDYVAVTGRRVSFEYILLAGLNDLPEHAGELADLVGGFQSHVNLIPYNPISEVD-YQRPS 317
Query: 315 DDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 350
D + F + LR ++ +VR G + ACGQL
Sbjct: 318 DYDIQDFAEALR-ERHVAVSVRYSRGLEKDAACGQL 352
>gi|440510102|ref|YP_007347538.1| Ribosomal RNA large subunit methyltransferase N [Candidatus
Blochmannia chromaiodes str. 640]
gi|440454315|gb|AGC03807.1| Ribosomal RNA large subunit methyltransferase N [Candidatus
Blochmannia chromaiodes str. 640]
Length = 373
Score = 195 bits (496), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 109/267 (40%), Positives = 162/267 (60%), Gaps = 24/267 (8%)
Query: 112 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN--------- 162
P R+TLC+SSQ+GC +GC+FC T GF NL+ EI+ Q+ A++ N
Sbjct: 106 PENKRTTLCVSSQIGCPLGCSFCGTAQQGFNRNLNVSEIIGQVWRAAQFINLNKKIKIKN 165
Query: 163 ----IRNVVFMGMGEPLNNYAALVEAVR-IMTGLPFQVSPKRITVSTVGIVHAINKFHS- 216
I N+VFMGMGEPL N +V A+R I+ L F++S + IT+ST GIV I K +
Sbjct: 166 NRFPITNIVFMGMGEPLLNIVNVVSAIRIILDDLGFKLSKRHITLSTAGIVPGIEKLKNM 225
Query: 217 -DLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQ---KNSQQKIFIEYIML 272
D+P LA+SLHAP +R +IMP + + + ++ A + Y K++ +I IEY++L
Sbjct: 226 IDIP---LAISLHAPNDIIRNKIMPINKKYNINSVLEAARRYSIDTKSNHGRITIEYVLL 282
Query: 273 DGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIR 332
+ND+ HAHQL K L+ +NLIP+NPI ++ ++ SS ++ +F K+L YNI
Sbjct: 283 KNINDDVLHAHQLAKQLQGIPCKINLIPWNPIPNI-RYACSSQIRMRAFLKVLL-KYNII 340
Query: 333 TTVRKQMGQDISGACGQLVVNLPDKIS 359
T +RK G DI+ ACGQL + ++I+
Sbjct: 341 TIIRKIRGADINAACGQLTGEVINRIN 367
>gi|357402028|ref|YP_004913953.1| ribosomal RNA large subunit methyltransferase N [Streptomyces
cattleya NRRL 8057 = DSM 46488]
gi|337768437|emb|CCB77150.1| Ribosomal RNA large subunit methyltransferase N [Streptomyces
cattleya NRRL 8057 = DSM 46488]
Length = 368
Score = 195 bits (496), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 125/351 (35%), Positives = 185/351 (52%), Gaps = 41/351 (11%)
Query: 18 FEKAGIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHSVVDSSDD 77
F + QH+ +Y ++P W + +P+AA L P ++ V DD
Sbjct: 42 FRAKQLSQHYFA---RYA-DDP-ATWTD---IPAAARGALAEGLLPELMSVVRHVSCDDD 93
Query: 78 VTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATG 137
T K L +L +G VE+V+MRY R T+CISSQ GC M C FCATG
Sbjct: 94 TTRKTLWRLFDGTLVESVLMRYPD--------------RVTMCISSQAGCGMNCPFCATG 139
Query: 138 TMGFKSNLSSGEIVEQLVHASRL----------SNIRNVVFMGMGEPLNNYAALVEAVRI 187
G NLS+ EIV Q+V R + + N+VFMGMGEPL NY +V A+R
Sbjct: 140 QAGLTRNLSTAEIVHQIVAGMRSLRDGEVPGGPARLSNIVFMGMGEPLANYNRVVAAIRR 199
Query: 188 MT-----GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAA 242
+T GL +S + ITVSTVG+V A+ +F + LA+SLHAP ++R ++P
Sbjct: 200 LTDPAPDGL--GLSQRGITVSTVGLVPAMLRFADEGFKCRLALSLHAPDDELRDTLVPVN 257
Query: 243 RAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFN 302
+ + ++++A Y + S +++ IEY ++ +ND A LG+LL+ + VNLIP N
Sbjct: 258 TRWKVREVLDAAWHYAEVSGRRVSIEYALIRDINDHAWRADLLGRLLKGRRAHVNLIPLN 317
Query: 303 PIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVN 353
P S++ S + +F + L ++ + TVR GQ+I GACGQL +
Sbjct: 318 PTPG-SKWTASRPEDEKAFVRALE-AHGVPVTVRDTRGQEIDGACGQLAAS 366
>gi|194432102|ref|ZP_03064391.1| radical SAM enzyme, Cfr family [Shigella dysenteriae 1012]
gi|417673263|ref|ZP_12322718.1| hypothetical protein SD15574_2919 [Shigella dysenteriae 155-74]
gi|194419631|gb|EDX35711.1| radical SAM enzyme, Cfr family [Shigella dysenteriae 1012]
gi|332089738|gb|EGI94839.1| hypothetical protein SD15574_2919 [Shigella dysenteriae 155-74]
Length = 384
Score = 195 bits (496), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 107/259 (41%), Positives = 156/259 (60%), Gaps = 16/259 (6%)
Query: 112 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN--------- 162
P R+TLC+SSQVGC + C FC+T GF NL EI+ Q+ A+++
Sbjct: 110 PEDDRATLCVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVGAAKVTGQRP 169
Query: 163 IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 221
I NVV MGMGEPL N +V A+ IM F +S +R+T+ST G+V A++K D+ +
Sbjct: 170 ITNVVMMGMGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDV 228
Query: 222 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDE 278
LA+SLHAP ++R +I+P + + +E + A++ Y + S Q ++ IEY+MLD VND
Sbjct: 229 ALAISLHAPNDEIRDEIVPINKKYNIETFLAAVRRYLEKSNANQGRVTIEYVMLDHVNDG 288
Query: 279 EQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQ 338
+HAHQL +LL+ +NLIP+NP + + SS+ ++ F K+L SY T VRK
Sbjct: 289 TEHAHQLAELLKDTPCKINLIPWNPFPG-APYERSSNSRIDRFSKVLM-SYGFTTIVRKT 346
Query: 339 MGQDISGACGQLVVNLPDK 357
G DI ACGQL ++ D+
Sbjct: 347 RGDDIDAACGQLAGDVIDR 365
>gi|376248788|ref|YP_005140732.1| hypothetical protein CDHC04_1423 [Corynebacterium diphtheriae HC04]
gi|376251587|ref|YP_005138468.1| hypothetical protein CDHC03_1423 [Corynebacterium diphtheriae HC03]
gi|376257401|ref|YP_005145292.1| hypothetical protein CDVA01_1385 [Corynebacterium diphtheriae VA01]
gi|372113091|gb|AEX79150.1| hypothetical protein CDHC03_1423 [Corynebacterium diphtheriae HC03]
gi|372115356|gb|AEX81414.1| hypothetical protein CDHC04_1423 [Corynebacterium diphtheriae HC04]
gi|372119918|gb|AEX83652.1| hypothetical protein CDVA01_1385 [Corynebacterium diphtheriae VA01]
Length = 368
Score = 195 bits (496), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 125/319 (39%), Positives = 175/319 (54%), Gaps = 35/319 (10%)
Query: 49 LPSAAYSLLRSKFKPLTSTLHSVVDSSDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNG 108
LP+AA ++ P V + D T K L KL +G +E+V+MRY +
Sbjct: 67 LPAAAREKVKDALFPQLMQPVRAVQADDGETQKTLWKLHDGTLLESVLMRYPN------- 119
Query: 109 KPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHAS--------RL 160
R+TLCISSQ GC M C FCATG G NLS+GEIV+Q+ AS RL
Sbjct: 120 -------RATLCISSQAGCGMACPFCATGQGGLDRNLSTGEIVDQVRAASATMQAEGGRL 172
Query: 161 SNIRNVVFMGMGEPLNNYAALVEAVRIMTG-LP--FQVSPKRITVSTVGIVHAINKFHSD 217
SNI VFMGMGEPL NY +V AVR +T +P F +S + +TVSTVG+ AI K +
Sbjct: 173 SNI---VFMGMGEPLANYKRVVSAVRQITAPVPEGFGISQRNVTVSTVGLAPAIRKLADE 229
Query: 218 LPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVND 277
+ LAVSLH P ++R ++P + + ++++A + Y S +++ IEY ++ VND
Sbjct: 230 DLSVTLAVSLHTPDDELRNTLVPTNNRWEVAEVLDAARYYADRSGRRVSIEYALIRDVND 289
Query: 278 EEQHAHQLGKLLETF---QVVVNLIPFNPIGSVSQFRTSSDDKVSSF-QKILRGSYNIRT 333
+ A LGK L V VNLIP NP S++ S D+ F ++++ + +
Sbjct: 290 QGWRADMLGKKLHKALGPLVHVNLIPLNPTPG-SKWDASPMDRQKEFVRRVI--AQGVTC 346
Query: 334 TVRKQMGQDISGACGQLVV 352
TVR GQ+I+ ACGQL
Sbjct: 347 TVRDTRGQEIAAACGQLAA 365
>gi|323487018|ref|ZP_08092330.1| hypothetical protein HMPREF9474_04081 [Clostridium symbiosum
WAL-14163]
gi|323692060|ref|ZP_08106307.1| radical SAM enzyme [Clostridium symbiosum WAL-14673]
gi|355630344|ref|ZP_09050803.1| ribosomal RNA large subunit methyltransferase N [Clostridium sp.
7_3_54FAA]
gi|323399666|gb|EGA92052.1| hypothetical protein HMPREF9474_04081 [Clostridium symbiosum
WAL-14163]
gi|323503860|gb|EGB19675.1| radical SAM enzyme [Clostridium symbiosum WAL-14673]
gi|354818692|gb|EHF03159.1| ribosomal RNA large subunit methyltransferase N [Clostridium sp.
7_3_54FAA]
Length = 350
Score = 195 bits (496), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 116/335 (34%), Positives = 185/335 (55%), Gaps = 29/335 (8%)
Query: 31 IWKYVIENPNCEWDEFPSLPSA-----AYSLLRSKFKPLTSTLHSVVDSSDDVTTKLLVK 85
+++++ E +DE +L A + + KP+ + + D T K L +
Sbjct: 31 LYRWMHEKLAASFDEMTNLSKDLRGKLAENCTFTALKPVCVRISQIDD-----TRKYLFE 85
Query: 86 LQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNL 145
L++G +E+V+M+Y +++CISSQVGC+MGC FCA+ G + NL
Sbjct: 86 LEDGNVIESVLMKYKHG--------------NSVCISSQVGCRMGCRFCASTLDGLERNL 131
Query: 146 SSGEIVEQLVHASRLSNIR--NVVFMGMGEPLNNYAALVEAVRIMTGLP-FQVSPKRITV 202
+ E+++Q+ R + R NVV MG GEPL+NY L+ +R++TG +S + +TV
Sbjct: 132 TPSEMLDQIYRIQRDTGERVSNVVVMGSGEPLDNYDNLIRFIRLLTGEGGLNISQRNVTV 191
Query: 203 STVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQ 262
ST GIV I K + + LA+SLHAP +VR +MP A+ + L ++M+A + Y + +
Sbjct: 192 STCGIVPGIRKLAEEDLQITLALSLHAPNDEVRRTLMPVAKRYGLNEVMDACRYYFEKTG 251
Query: 263 QKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQ 322
+++ EY ++ GVND A L +L++ VNLIP NPI ++ S + +F+
Sbjct: 252 RRLTFEYSLVQGVNDNLDEAKALVRLIKDQHGHVNLIPVNPIKE-REYVQSGRQAIEAFK 310
Query: 323 KILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDK 357
L S I TVR++MG+DI GACGQL + DK
Sbjct: 311 NQLEKS-GINVTVRREMGRDIDGACGQLRKSFIDK 344
>gi|337291022|ref|YP_004630043.1| hypothetical protein CULC22_01414 [Corynebacterium ulcerans
BR-AD22]
gi|384515934|ref|YP_005711026.1| hypothetical protein CULC809_01400 [Corynebacterium ulcerans 809]
gi|397654283|ref|YP_006494966.1| ribosomal RNA large subunit methyltransferase N [Corynebacterium
ulcerans 0102]
gi|334697135|gb|AEG81932.1| hypothetical protein CULC809_01400 [Corynebacterium ulcerans 809]
gi|334699328|gb|AEG84124.1| hypothetical protein CULC22_01414 [Corynebacterium ulcerans
BR-AD22]
gi|393403239|dbj|BAM27731.1| ribosomal RNA large subunit methyltransferase N [Corynebacterium
ulcerans 0102]
Length = 396
Score = 195 bits (496), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 124/320 (38%), Positives = 176/320 (55%), Gaps = 35/320 (10%)
Query: 49 LPSAAYSLLRSKFKPLTSTLHSVVDSSDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNG 108
LP+AA ++ K P T +++ T K L KL +G +E+V+MRY +
Sbjct: 95 LPAAARVKVQEKLFPTLMTPVRAIETDAGETQKTLWKLHDGTLLESVLMRYPN------- 147
Query: 109 KPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHAS--------RL 160
R+TLCISSQ GC M C FCATG G NLS+ EIV+Q+ AS RL
Sbjct: 148 -------RATLCISSQAGCGMACPFCATGQGGLDRNLSTAEIVDQVRAASATMTAEGGRL 200
Query: 161 SNIRNVVFMGMGEPLNNYAALVEAVR-IMTGLP--FQVSPKRITVSTVGIVHAINKFHSD 217
SNI VFMGMGEPL NY +V AVR I + +P F +S + +TVSTVG+ AI K +
Sbjct: 201 SNI---VFMGMGEPLANYKRVVSAVRQITSPVPEGFGISQRNVTVSTVGLAPAIRKLAEE 257
Query: 218 LPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVND 277
+ LAVSLH P ++R ++P + + ++++A + Y S +++ IEY ++ VND
Sbjct: 258 DLSVTLAVSLHTPDDELRDTLVPTNNRWEVAEVLDAARYYADRSGRRVSIEYALIRDVND 317
Query: 278 EEQHAHQLGKLLETF---QVVVNLIPFNPIGSVSQFRTSSDDKVSSF-QKILRGSYNIRT 333
+ A LGK L V VNLIP NP S++ S D+ F ++++ + +
Sbjct: 318 QPWRADMLGKKLHKALGSLVHVNLIPLNPTPG-SEWDASPKDRQDEFVRRVI--AQGVPC 374
Query: 334 TVRKQMGQDISGACGQLVVN 353
TVR GQ+I+ ACGQL
Sbjct: 375 TVRDTRGQEIAAACGQLAAE 394
>gi|307706322|ref|ZP_07643134.1| UPF0063 protein yfgB [Streptococcus mitis SK321]
gi|307708956|ref|ZP_07645416.1| UPF0063 protein yfgB [Streptococcus mitis SK564]
gi|417847060|ref|ZP_12493031.1| 23S rRNA m2A2503 methyltransferase [Streptococcus mitis SK1073]
gi|417849607|ref|ZP_12495526.1| 23S rRNA m2A2503 methyltransferase [Streptococcus mitis SK1080]
gi|418967600|ref|ZP_13519256.1| 23S rRNA m2A2503 methyltransferase [Streptococcus mitis SK616]
gi|418976331|ref|ZP_13524211.1| 23S rRNA m2A2503 methyltransferase [Streptococcus mitis SK575]
gi|307618240|gb|EFN97395.1| UPF0063 protein yfgB [Streptococcus mitis SK321]
gi|307620292|gb|EFN99408.1| UPF0063 protein yfgB [Streptococcus mitis SK564]
gi|339455903|gb|EGP68500.1| 23S rRNA m2A2503 methyltransferase [Streptococcus mitis SK1080]
gi|339457335|gb|EGP69909.1| 23S rRNA m2A2503 methyltransferase [Streptococcus mitis SK1073]
gi|383343344|gb|EID21529.1| 23S rRNA m2A2503 methyltransferase [Streptococcus mitis SK616]
gi|383351634|gb|EID29413.1| 23S rRNA m2A2503 methyltransferase [Streptococcus mitis SK575]
Length = 361
Score = 195 bits (496), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 119/359 (33%), Positives = 191/359 (53%), Gaps = 30/359 (8%)
Query: 20 KAGIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKF--KPLTSTLHSVVDSSDD 77
+ G K+ IW+++ ++E +L + L +F PL +V S D
Sbjct: 19 EQGEKKFRADQIWEWLYRKRVQSFEEMTNLSKDLIAKLNDQFVVNPLK---QRIVQESAD 75
Query: 78 VTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATG 137
T K L +L +G +E V+MR L ++C+++QVGC +GC FCA+G
Sbjct: 76 GTVKYLFELPDGMLIETVLMRQHYGL--------------SVCVTTQVGCNIGCTFCASG 121
Query: 138 TMGFKSNLSSGEIVEQLVHASRLSNIR-------NVVFMGMGEPLNNYAALVEAVR-IMT 189
+ + +L++GEIV Q++ + + R ++V MG+GEP +NY ++ VR I
Sbjct: 122 LIKKQRDLNNGEIVAQIMLVQKYFDERGQDERVSHIVVMGIGEPFDNYNNVLNFVRTIND 181
Query: 190 GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEK 249
+ + ITVST G+ H I F ++ +NLAVSLHAP ++R IM RAFP+EK
Sbjct: 182 DKGMAIGARHITVSTSGLAHKIRDFANEGVQVNLAVSLHAPNNELRSSIMKINRAFPIEK 241
Query: 250 LMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVV--VNLIPFNPIGSV 307
L A++ Y + + +++ EYIML+ VND + A +L +LL+ + + VNLIP+NP+
Sbjct: 242 LFAAIEYYIETTNRRVTFEYIMLNEVNDGVEQALELAELLKNIKKLSYVNLIPYNPVSEH 301
Query: 308 SQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDKISAKSTPPV 366
Q+ S ++V +F L+ + VR++ G DI ACGQL N + K+ V
Sbjct: 302 DQYSRSPKERVLAFYDTLKKK-GVNCVVRQEHGTDIDAACGQLRSNTMKRDRQKAVAAV 359
>gi|15832633|ref|NP_311406.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O157:H7 str. Sakai]
gi|168748424|ref|ZP_02773446.1| radical SAM enzyme, Cfr family [Escherichia coli O157:H7 str.
EC4113]
gi|168756289|ref|ZP_02781296.1| radical SAM enzyme, Cfr family [Escherichia coli O157:H7 str.
EC4401]
gi|168761127|ref|ZP_02786134.1| radical SAM enzyme, Cfr family [Escherichia coli O157:H7 str.
EC4501]
gi|168768609|ref|ZP_02793616.1| radical SAM enzyme, Cfr family [Escherichia coli O157:H7 str.
EC4486]
gi|168773569|ref|ZP_02798576.1| radical SAM enzyme, Cfr family [Escherichia coli O157:H7 str.
EC4196]
gi|168778483|ref|ZP_02803490.1| radical SAM enzyme, Cfr family [Escherichia coli O157:H7 str.
EC4076]
gi|168787863|ref|ZP_02812870.1| radical SAM enzyme, Cfr family [Escherichia coli O157:H7 str.
EC869]
gi|168798888|ref|ZP_02823895.1| radical SAM enzyme, Cfr family [Escherichia coli O157:H7 str.
EC508]
gi|195936659|ref|ZP_03082041.1| hypothetical protein EscherichcoliO157_09385 [Escherichia coli
O157:H7 str. EC4024]
gi|208808631|ref|ZP_03250968.1| radical SAM enzyme, Cfr family [Escherichia coli O157:H7 str.
EC4206]
gi|208814380|ref|ZP_03255709.1| radical SAM enzyme, Cfr family [Escherichia coli O157:H7 str.
EC4045]
gi|208820776|ref|ZP_03261096.1| radical SAM enzyme, Cfr family [Escherichia coli O157:H7 str.
EC4042]
gi|209400754|ref|YP_002271987.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O157:H7 str. EC4115]
gi|217327135|ref|ZP_03443218.1| radical SAM enzyme, Cfr family [Escherichia coli O157:H7 str.
TW14588]
gi|254794463|ref|YP_003079300.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O157:H7 str. TW14359]
gi|261223051|ref|ZP_05937332.1| predicted enzyme [Escherichia coli O157:H7 str. FRIK2000]
gi|261259398|ref|ZP_05951931.1| predicted enzyme [Escherichia coli O157:H7 str. FRIK966]
gi|291283738|ref|YP_003500556.1| Radical SAM enzyme, Cfr family [Escherichia coli O55:H7 str.
CB9615]
gi|387507882|ref|YP_006160138.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O55:H7 str. RM12579]
gi|387883711|ref|YP_006314013.1| hypothetical protein CDCO157_3146 [Escherichia coli Xuzhou21]
gi|416310003|ref|ZP_11656202.1| Ribosomal RNA large subunit methyltransferase N [Escherichia coli
O157:H7 str. 1044]
gi|416321670|ref|ZP_11663518.1| Ribosomal RNA large subunit methyltransferase N [Escherichia coli
O157:H7 str. EC1212]
gi|416329944|ref|ZP_11669071.1| Ribosomal RNA large subunit methyltransferase N [Escherichia coli
O157:H7 str. 1125]
gi|416775881|ref|ZP_11874617.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O157:H7 str. G5101]
gi|416809527|ref|ZP_11889129.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O55:H7 str. 3256-97]
gi|416820198|ref|ZP_11893687.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O55:H7 str. USDA 5905]
gi|416831018|ref|ZP_11898977.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O157:H7 str. LSU-61]
gi|419046194|ref|ZP_13593131.1| 23S rRNA methyltransferase [Escherichia coli DEC3A]
gi|419052228|ref|ZP_13599099.1| 23S rRNA methyltransferase [Escherichia coli DEC3B]
gi|419058263|ref|ZP_13605068.1| 23S rRNA methyltransferase [Escherichia coli DEC3C]
gi|419063730|ref|ZP_13610457.1| 23S rRNA methyltransferase [Escherichia coli DEC3D]
gi|419070628|ref|ZP_13616249.1| 23S rRNA methyltransferase [Escherichia coli DEC3E]
gi|419081709|ref|ZP_13627157.1| 23S rRNA methyltransferase [Escherichia coli DEC4A]
gi|419087564|ref|ZP_13632920.1| 23S rRNA methyltransferase [Escherichia coli DEC4B]
gi|419093455|ref|ZP_13638740.1| 23S rRNA methyltransferase [Escherichia coli DEC4C]
gi|419099354|ref|ZP_13644551.1| 23S rRNA methyltransferase [Escherichia coli DEC4D]
gi|419105081|ref|ZP_13650210.1| 23S rRNA methyltransferase [Escherichia coli DEC4E]
gi|419110541|ref|ZP_13655597.1| 23S rRNA methyltransferase [Escherichia coli DEC4F]
gi|419115900|ref|ZP_13660916.1| 23S rRNA methyltransferase [Escherichia coli DEC5A]
gi|419121471|ref|ZP_13666427.1| 23S rRNA methyltransferase [Escherichia coli DEC5B]
gi|419126965|ref|ZP_13671849.1| 23S rRNA methyltransferase [Escherichia coli DEC5C]
gi|419132531|ref|ZP_13677368.1| 23S rRNA methyltransferase [Escherichia coli DEC5D]
gi|419137567|ref|ZP_13682362.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
DEC5E]
gi|420270560|ref|ZP_14772918.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
PA22]
gi|420276519|ref|ZP_14778803.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
PA40]
gi|420287930|ref|ZP_14790116.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
TW10246]
gi|420293547|ref|ZP_14795663.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
TW11039]
gi|420299389|ref|ZP_14801438.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
TW09109]
gi|420305342|ref|ZP_14807336.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
TW10119]
gi|420310397|ref|ZP_14812330.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
EC1738]
gi|420316262|ref|ZP_14818137.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
EC1734]
gi|421813504|ref|ZP_16249222.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
8.0416]
gi|421819319|ref|ZP_16254815.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
10.0821]
gi|421825313|ref|ZP_16260671.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
FRIK920]
gi|421832046|ref|ZP_16267333.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
PA7]
gi|423726228|ref|ZP_17700289.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
PA31]
gi|424078605|ref|ZP_17815596.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
FDA505]
gi|424085070|ref|ZP_17821573.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
FDA517]
gi|424091479|ref|ZP_17827424.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
FRIK1996]
gi|424098101|ref|ZP_17833423.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
FRIK1985]
gi|424104334|ref|ZP_17839115.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
FRIK1990]
gi|424111006|ref|ZP_17845250.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
93-001]
gi|424116945|ref|ZP_17850793.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
PA3]
gi|424123127|ref|ZP_17856458.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
PA5]
gi|424129291|ref|ZP_17862207.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
PA9]
gi|424135565|ref|ZP_17868037.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
PA10]
gi|424142130|ref|ZP_17874026.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
PA14]
gi|424148560|ref|ZP_17879944.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
PA15]
gi|424154377|ref|ZP_17885341.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
PA24]
gi|424250489|ref|ZP_17890904.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
PA25]
gi|424328684|ref|ZP_17896816.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
PA28]
gi|424450811|ref|ZP_17902526.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
PA32]
gi|424457011|ref|ZP_17908157.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
PA33]
gi|424463448|ref|ZP_17913896.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
PA39]
gi|424469788|ref|ZP_17919621.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
PA41]
gi|424476313|ref|ZP_17925638.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
PA42]
gi|424482066|ref|ZP_17931056.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
TW07945]
gi|424488226|ref|ZP_17936803.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
TW09098]
gi|424494790|ref|ZP_17942525.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
TW09195]
gi|424501596|ref|ZP_17948502.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
EC4203]
gi|424507843|ref|ZP_17954248.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
EC4196]
gi|424515164|ref|ZP_17959858.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
TW14313]
gi|424521384|ref|ZP_17965521.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
TW14301]
gi|424527277|ref|ZP_17971002.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
EC4421]
gi|424533425|ref|ZP_17976784.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
EC4422]
gi|424539525|ref|ZP_17982477.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
EC4013]
gi|424545576|ref|ZP_17987991.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
EC4402]
gi|424551816|ref|ZP_17993684.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
EC4439]
gi|424558002|ref|ZP_17999428.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
EC4436]
gi|424564348|ref|ZP_18005358.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
EC4437]
gi|424570481|ref|ZP_18011044.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
EC4448]
gi|424576628|ref|ZP_18016712.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
EC1845]
gi|424582467|ref|ZP_18022121.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
EC1863]
gi|425099174|ref|ZP_18501913.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
3.4870]
gi|425105233|ref|ZP_18507559.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
5.2239]
gi|425111248|ref|ZP_18513175.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
6.0172]
gi|425127173|ref|ZP_18528350.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
8.0586]
gi|425132906|ref|ZP_18533763.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
8.2524]
gi|425139413|ref|ZP_18539802.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
10.0833]
gi|425145207|ref|ZP_18545209.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
10.0869]
gi|425151316|ref|ZP_18550937.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
88.0221]
gi|425157179|ref|ZP_18556452.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
PA34]
gi|425163538|ref|ZP_18562433.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
FDA506]
gi|425169278|ref|ZP_18567762.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
FDA507]
gi|425175343|ref|ZP_18573472.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
FDA504]
gi|425181370|ref|ZP_18579076.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
FRIK1999]
gi|425187640|ref|ZP_18584923.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
FRIK1997]
gi|425194412|ref|ZP_18591191.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
NE1487]
gi|425200888|ref|ZP_18597106.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
NE037]
gi|425207270|ref|ZP_18603079.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
FRIK2001]
gi|425213029|ref|ZP_18608439.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
PA4]
gi|425219149|ref|ZP_18614126.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
PA23]
gi|425225699|ref|ZP_18620176.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
PA49]
gi|425231963|ref|ZP_18626012.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
PA45]
gi|425237882|ref|ZP_18631611.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
TT12B]
gi|425244097|ref|ZP_18637415.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
MA6]
gi|425250261|ref|ZP_18643207.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
5905]
gi|425256090|ref|ZP_18648618.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
CB7326]
gi|425262350|ref|ZP_18654367.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
EC96038]
gi|425295781|ref|ZP_18685992.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
PA38]
gi|425312487|ref|ZP_18701680.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
EC1735]
gi|425318481|ref|ZP_18707279.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
EC1736]
gi|425324549|ref|ZP_18712927.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
EC1737]
gi|425330914|ref|ZP_18718779.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
EC1846]
gi|425337090|ref|ZP_18724472.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
EC1847]
gi|425343432|ref|ZP_18730331.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
EC1848]
gi|425349241|ref|ZP_18735718.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
EC1849]
gi|425355535|ref|ZP_18741610.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
EC1850]
gi|425361498|ref|ZP_18747155.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
EC1856]
gi|425367680|ref|ZP_18752850.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
EC1862]
gi|425374030|ref|ZP_18758680.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
EC1864]
gi|425386919|ref|ZP_18770485.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
EC1866]
gi|425393606|ref|ZP_18776721.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
EC1868]
gi|425399705|ref|ZP_18782419.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
EC1869]
gi|425405794|ref|ZP_18788025.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
EC1870]
gi|425412184|ref|ZP_18793955.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
NE098]
gi|425418505|ref|ZP_18799784.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
FRIK523]
gi|425429766|ref|ZP_18810386.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
0.1304]
gi|428948186|ref|ZP_19020480.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
88.1467]
gi|428954282|ref|ZP_19026091.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
88.1042]
gi|428960247|ref|ZP_19031565.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
89.0511]
gi|428966871|ref|ZP_19037600.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
90.0091]
gi|428972560|ref|ZP_19042911.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
90.0039]
gi|428979099|ref|ZP_19048935.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
90.2281]
gi|428984910|ref|ZP_19054316.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
93.0055]
gi|428990995|ref|ZP_19059996.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
93.0056]
gi|428996861|ref|ZP_19065470.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
94.0618]
gi|429003107|ref|ZP_19071244.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
95.0183]
gi|429009192|ref|ZP_19076719.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
95.1288]
gi|429015721|ref|ZP_19082626.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
95.0943]
gi|429021557|ref|ZP_19088092.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
96.0428]
gi|429027654|ref|ZP_19093669.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
96.0427]
gi|429033842|ref|ZP_19099378.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
96.0939]
gi|429039900|ref|ZP_19105021.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
96.0932]
gi|429045761|ref|ZP_19110487.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
96.0107]
gi|429051230|ref|ZP_19115801.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
97.0003]
gi|429056604|ref|ZP_19120930.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
97.1742]
gi|429062101|ref|ZP_19126128.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
97.0007]
gi|429068376|ref|ZP_19131854.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
99.0672]
gi|429074324|ref|ZP_19137580.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
99.0678]
gi|429079518|ref|ZP_19142658.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
99.0713]
gi|429827534|ref|ZP_19358588.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
96.0109]
gi|429833895|ref|ZP_19364257.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
97.0010]
gi|444926069|ref|ZP_21245372.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
09BKT078844]
gi|444931779|ref|ZP_21250824.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
99.0814]
gi|444937229|ref|ZP_21256010.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
99.0815]
gi|444942860|ref|ZP_21261382.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
99.0816]
gi|444948272|ref|ZP_21266587.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
99.0839]
gi|444953888|ref|ZP_21271988.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
99.0848]
gi|444959413|ref|ZP_21277270.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
99.1753]
gi|444966218|ref|ZP_21283760.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
99.1775]
gi|444970544|ref|ZP_21287911.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
99.1793]
gi|444975832|ref|ZP_21292960.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
99.1805]
gi|444981215|ref|ZP_21298131.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
ATCC 700728]
gi|444986610|ref|ZP_21303395.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
PA11]
gi|444991925|ref|ZP_21308572.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
PA19]
gi|444997231|ref|ZP_21313733.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
PA13]
gi|445002808|ref|ZP_21319201.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
PA2]
gi|445008246|ref|ZP_21324489.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
PA47]
gi|445013341|ref|ZP_21329452.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
PA48]
gi|445019206|ref|ZP_21335175.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
PA8]
gi|445024662|ref|ZP_21340490.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
7.1982]
gi|445029997|ref|ZP_21345676.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
99.1781]
gi|445035465|ref|ZP_21351001.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
99.1762]
gi|445041089|ref|ZP_21356466.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
PA35]
gi|445046312|ref|ZP_21361567.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
3.4880]
gi|445051831|ref|ZP_21366882.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
95.0083]
gi|445057603|ref|ZP_21372465.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
99.0670]
gi|452971706|ref|ZP_21969933.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O157:H7 str. EC4009]
gi|205829862|sp|Q8XAA4.3|RLMN_ECO57 RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|254807175|sp|B5Z0Y6.1|RLMN_ECO5E RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|13362849|dbj|BAB36802.1| hypothetical protein [Escherichia coli O157:H7 str. Sakai]
gi|187770632|gb|EDU34476.1| radical SAM enzyme, Cfr family [Escherichia coli O157:H7 str.
EC4196]
gi|188017093|gb|EDU55215.1| radical SAM enzyme, Cfr family [Escherichia coli O157:H7 str.
EC4113]
gi|189003147|gb|EDU72133.1| radical SAM enzyme, Cfr family [Escherichia coli O157:H7 str.
EC4076]
gi|189356574|gb|EDU74993.1| radical SAM enzyme, Cfr family [Escherichia coli O157:H7 str.
EC4401]
gi|189362276|gb|EDU80695.1| radical SAM enzyme, Cfr family [Escherichia coli O157:H7 str.
EC4486]
gi|189368421|gb|EDU86837.1| radical SAM enzyme, Cfr family [Escherichia coli O157:H7 str.
EC4501]
gi|189372335|gb|EDU90751.1| radical SAM enzyme, Cfr family [Escherichia coli O157:H7 str.
EC869]
gi|189378598|gb|EDU97014.1| radical SAM enzyme, Cfr family [Escherichia coli O157:H7 str.
EC508]
gi|208728432|gb|EDZ78033.1| radical SAM enzyme, Cfr family [Escherichia coli O157:H7 str.
EC4206]
gi|208735657|gb|EDZ84344.1| radical SAM enzyme, Cfr family [Escherichia coli O157:H7 str.
EC4045]
gi|208740899|gb|EDZ88581.1| radical SAM enzyme, Cfr family [Escherichia coli O157:H7 str.
EC4042]
gi|209162154|gb|ACI39587.1| radical SAM enzyme, Cfr family [Escherichia coli O157:H7 str.
EC4115]
gi|209763360|gb|ACI79992.1| hypothetical protein ECs3379 [Escherichia coli]
gi|209763362|gb|ACI79993.1| hypothetical protein ECs3379 [Escherichia coli]
gi|209763364|gb|ACI79994.1| hypothetical protein ECs3379 [Escherichia coli]
gi|209763366|gb|ACI79995.1| hypothetical protein ECs3379 [Escherichia coli]
gi|217319502|gb|EEC27927.1| radical SAM enzyme, Cfr family [Escherichia coli O157:H7 str.
TW14588]
gi|254593863|gb|ACT73224.1| predicted enzyme [Escherichia coli O157:H7 str. TW14359]
gi|290763611|gb|ADD57572.1| Radical SAM enzyme, Cfr family [Escherichia coli O55:H7 str.
CB9615]
gi|320188850|gb|EFW63509.1| Ribosomal RNA large subunit methyltransferase N [Escherichia coli
O157:H7 str. EC1212]
gi|320640861|gb|EFX10349.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O157:H7 str. G5101]
gi|320657195|gb|EFX25004.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O55:H7 str. 3256-97 TW 07815]
gi|320662801|gb|EFX30133.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O55:H7 str. USDA 5905]
gi|320667605|gb|EFX34520.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O157:H7 str. LSU-61]
gi|326340315|gb|EGD64119.1| Ribosomal RNA large subunit methyltransferase N [Escherichia coli
O157:H7 str. 1125]
gi|326344999|gb|EGD68743.1| Ribosomal RNA large subunit methyltransferase N [Escherichia coli
O157:H7 str. 1044]
gi|374359876|gb|AEZ41583.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O55:H7 str. RM12579]
gi|377892857|gb|EHU57297.1| 23S rRNA methyltransferase [Escherichia coli DEC3B]
gi|377893024|gb|EHU57463.1| 23S rRNA methyltransferase [Escherichia coli DEC3A]
gi|377904850|gb|EHU69128.1| 23S rRNA methyltransferase [Escherichia coli DEC3C]
gi|377909370|gb|EHU73572.1| 23S rRNA methyltransferase [Escherichia coli DEC3D]
gi|377911602|gb|EHU75771.1| 23S rRNA methyltransferase [Escherichia coli DEC3E]
gi|377926339|gb|EHU90274.1| 23S rRNA methyltransferase [Escherichia coli DEC4A]
gi|377929819|gb|EHU93707.1| 23S rRNA methyltransferase [Escherichia coli DEC4B]
gi|377941470|gb|EHV05210.1| 23S rRNA methyltransferase [Escherichia coli DEC4D]
gi|377941897|gb|EHV05634.1| 23S rRNA methyltransferase [Escherichia coli DEC4C]
gi|377947564|gb|EHV11231.1| 23S rRNA methyltransferase [Escherichia coli DEC4E]
gi|377956797|gb|EHV20340.1| 23S rRNA methyltransferase [Escherichia coli DEC4F]
gi|377960009|gb|EHV23500.1| 23S rRNA methyltransferase [Escherichia coli DEC5A]
gi|377966695|gb|EHV30106.1| 23S rRNA methyltransferase [Escherichia coli DEC5B]
gi|377974021|gb|EHV37350.1| 23S rRNA methyltransferase [Escherichia coli DEC5C]
gi|377975494|gb|EHV38815.1| 23S rRNA methyltransferase [Escherichia coli DEC5D]
gi|377983984|gb|EHV47225.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
DEC5E]
gi|386797169|gb|AFJ30203.1| hypothetical protein CDCO157_3146 [Escherichia coli Xuzhou21]
gi|390641137|gb|EIN20569.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
FRIK1996]
gi|390642796|gb|EIN22185.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
FDA517]
gi|390643584|gb|EIN22923.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
FDA505]
gi|390659994|gb|EIN37731.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
93-001]
gi|390661281|gb|EIN38940.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
FRIK1985]
gi|390663150|gb|EIN40675.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
FRIK1990]
gi|390676911|gb|EIN52989.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
PA3]
gi|390680262|gb|EIN56117.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
PA5]
gi|390683370|gb|EIN59066.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
PA9]
gi|390695826|gb|EIN70337.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
PA10]
gi|390700278|gb|EIN74589.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
PA15]
gi|390700773|gb|EIN75054.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
PA14]
gi|390714072|gb|EIN86986.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
PA22]
gi|390722140|gb|EIN94829.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
PA25]
gi|390723591|gb|EIN96179.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
PA24]
gi|390726602|gb|EIN99040.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
PA28]
gi|390741778|gb|EIO12832.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
PA31]
gi|390742188|gb|EIO13204.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
PA32]
gi|390744873|gb|EIO15714.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
PA33]
gi|390757929|gb|EIO27399.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
PA40]
gi|390766958|gb|EIO36067.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
PA41]
gi|390768085|gb|EIO37133.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
PA39]
gi|390768492|gb|EIO37523.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
PA42]
gi|390789669|gb|EIO57118.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
TW10246]
gi|390789917|gb|EIO57346.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
TW07945]
gi|390795870|gb|EIO63147.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
TW11039]
gi|390805318|gb|EIO72265.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
TW09098]
gi|390807084|gb|EIO73986.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
TW09109]
gi|390815647|gb|EIO82175.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
TW10119]
gi|390825447|gb|EIO91366.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
EC4203]
gi|390830043|gb|EIO95620.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
TW09195]
gi|390830323|gb|EIO95870.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
EC4196]
gi|390845594|gb|EIP09222.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
TW14301]
gi|390845920|gb|EIP09540.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
TW14313]
gi|390850195|gb|EIP13583.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
EC4421]
gi|390860947|gb|EIP23229.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
EC4422]
gi|390864877|gb|EIP26946.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
EC4013]
gi|390870141|gb|EIP31700.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
EC4402]
gi|390878151|gb|EIP39026.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
EC4439]
gi|390883252|gb|EIP43694.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
EC4436]
gi|390892968|gb|EIP52538.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
EC4437]
gi|390895493|gb|EIP54958.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
EC4448]
gi|390899676|gb|EIP58912.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
EC1738]
gi|390907626|gb|EIP66479.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
EC1734]
gi|390918711|gb|EIP77100.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
EC1863]
gi|390919983|gb|EIP78303.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
EC1845]
gi|408064418|gb|EKG98900.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
PA7]
gi|408066327|gb|EKH00786.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
FRIK920]
gi|408069884|gb|EKH04266.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
PA34]
gi|408079126|gb|EKH13254.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
FDA506]
gi|408082592|gb|EKH16558.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
FDA507]
gi|408091003|gb|EKH24240.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
FDA504]
gi|408097395|gb|EKH30294.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
FRIK1999]
gi|408103694|gb|EKH36024.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
FRIK1997]
gi|408108272|gb|EKH40289.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
NE1487]
gi|408114578|gb|EKH46104.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
NE037]
gi|408120612|gb|EKH51588.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
FRIK2001]
gi|408127157|gb|EKH57661.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
PA4]
gi|408137512|gb|EKH67213.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
PA23]
gi|408139658|gb|EKH69255.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
PA49]
gi|408145800|gb|EKH74950.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
PA45]
gi|408154833|gb|EKH83163.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
TT12B]
gi|408159595|gb|EKH87648.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
MA6]
gi|408163444|gb|EKH91310.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
5905]
gi|408173198|gb|EKI00244.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
CB7326]
gi|408179707|gb|EKI06361.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
EC96038]
gi|408217248|gb|EKI41524.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
PA38]
gi|408226812|gb|EKI50436.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
EC1735]
gi|408238066|gb|EKI60901.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
EC1736]
gi|408241903|gb|EKI64508.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
EC1737]
gi|408246285|gb|EKI68583.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
EC1846]
gi|408255119|gb|EKI76582.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
EC1847]
gi|408258550|gb|EKI79810.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
EC1848]
gi|408265069|gb|EKI85824.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
EC1849]
gi|408273788|gb|EKI93828.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
EC1850]
gi|408276720|gb|EKI96604.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
EC1856]
gi|408285847|gb|EKJ04830.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
EC1862]
gi|408290654|gb|EKJ09358.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
EC1864]
gi|408307381|gb|EKJ24722.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
EC1868]
gi|408307662|gb|EKJ24991.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
EC1866]
gi|408318662|gb|EKJ34865.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
EC1869]
gi|408324647|gb|EKJ40573.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
EC1870]
gi|408325783|gb|EKJ41628.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
NE098]
gi|408336060|gb|EKJ50859.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
FRIK523]
gi|408345977|gb|EKJ60288.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
0.1304]
gi|408549146|gb|EKK26508.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
3.4870]
gi|408549414|gb|EKK26775.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
5.2239]
gi|408550426|gb|EKK27755.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
6.0172]
gi|408568610|gb|EKK44639.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
8.0586]
gi|408578467|gb|EKK53985.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
10.0833]
gi|408580912|gb|EKK56285.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
8.2524]
gi|408590986|gb|EKK65438.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
10.0869]
gi|408596065|gb|EKK70257.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
88.0221]
gi|408600699|gb|EKK74532.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
8.0416]
gi|408612240|gb|EKK85585.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
10.0821]
gi|427204361|gb|EKV74638.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
88.1042]
gi|427206414|gb|EKV76627.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
89.0511]
gi|427208158|gb|EKV78295.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
88.1467]
gi|427220501|gb|EKV89421.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
90.0091]
gi|427223956|gb|EKV92681.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
90.2281]
gi|427227705|gb|EKV96236.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
90.0039]
gi|427241486|gb|EKW08917.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
93.0056]
gi|427242015|gb|EKW09434.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
93.0055]
gi|427245645|gb|EKW12926.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
94.0618]
gi|427260560|gb|EKW26543.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
95.0183]
gi|427261065|gb|EKW27015.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
95.0943]
gi|427264277|gb|EKW29967.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
95.1288]
gi|427276138|gb|EKW40717.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
96.0428]
gi|427278860|gb|EKW43315.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
96.0427]
gi|427282992|gb|EKW47230.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
96.0939]
gi|427291472|gb|EKW54874.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
96.0932]
gi|427298976|gb|EKW61966.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
96.0107]
gi|427300130|gb|EKW63082.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
97.0003]
gi|427311965|gb|EKW74135.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
97.1742]
gi|427315043|gb|EKW77058.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
97.0007]
gi|427319322|gb|EKW81144.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
99.0672]
gi|427327390|gb|EKW88779.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
99.0678]
gi|427328850|gb|EKW90201.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
99.0713]
gi|429253334|gb|EKY37824.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
96.0109]
gi|429254905|gb|EKY39262.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
97.0010]
gi|444537779|gb|ELV17688.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
99.0814]
gi|444539340|gb|ELV19106.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
09BKT078844]
gi|444547149|gb|ELV25777.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
99.0815]
gi|444556973|gb|ELV34338.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
99.0839]
gi|444557764|gb|ELV35089.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
99.0816]
gi|444563079|gb|ELV40114.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
99.0848]
gi|444571589|gb|ELV48065.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
99.1775]
gi|444572591|gb|ELV49013.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
99.1753]
gi|444578977|gb|ELV54998.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
99.1793]
gi|444592927|gb|ELV68165.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
PA11]
gi|444593198|gb|ELV68429.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
ATCC 700728]
gi|444594770|gb|ELV69925.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
99.1805]
gi|444606370|gb|ELV80989.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
PA13]
gi|444606775|gb|ELV81381.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
PA19]
gi|444615314|gb|ELV89520.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
PA2]
gi|444622836|gb|ELV96780.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
PA47]
gi|444623680|gb|ELV97597.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
PA48]
gi|444629354|gb|ELW03058.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
PA8]
gi|444638195|gb|ELW11546.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
7.1982]
gi|444640520|gb|ELW13779.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
99.1781]
gi|444644880|gb|ELW17975.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
99.1762]
gi|444653968|gb|ELW26663.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
PA35]
gi|444659371|gb|ELW31789.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
3.4880]
gi|444663956|gb|ELW36160.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
95.0083]
gi|444669407|gb|ELW41390.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
99.0670]
Length = 384
Score = 195 bits (495), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 108/259 (41%), Positives = 156/259 (60%), Gaps = 16/259 (6%)
Query: 112 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN--------- 162
P R+TLC+SSQVGC + C FC+T GF NL EI+ Q+ A+++
Sbjct: 110 PEDDRATLCVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVGAAKVTGQRP 169
Query: 163 IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 221
I NVV MGMGEPL N +V A+ IM F +S +R+T+ST G+V A++K D+ +
Sbjct: 170 ITNVVMMGMGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDV 228
Query: 222 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDE 278
LA+SLHAP ++R +I+P + + +E + A++ Y + S Q ++ IEY+MLD VND
Sbjct: 229 ALAISLHAPNDEIRDEIVPINKKYNIETFLAAVRRYLEKSNANQGRVTIEYVMLDHVNDG 288
Query: 279 EQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQ 338
+HAHQL +LL+ +NLIP+NP + R SS+ ++ F K+L SY T VRK
Sbjct: 289 TEHAHQLAELLKDTPCKINLIPWNPFPAAPYGR-SSNSRIDRFSKVLM-SYGFTTIVRKT 346
Query: 339 MGQDISGACGQLVVNLPDK 357
G DI ACGQL ++ D+
Sbjct: 347 RGDDIDAACGQLAGDVIDR 365
>gi|421855029|ref|ZP_16287411.1| ribosomal RNA large subunit methyltransferase N [Acinetobacter
radioresistens DSM 6976 = NBRC 102413]
gi|403189529|dbj|GAB73612.1| ribosomal RNA large subunit methyltransferase N [Acinetobacter
radioresistens DSM 6976 = NBRC 102413]
Length = 411
Score = 195 bits (495), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 129/372 (34%), Positives = 205/372 (55%), Gaps = 43/372 (11%)
Query: 12 GIIRAE----FEKAGIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTST 67
G+ RAE FEK G K+ + K++ + ++ E ++ LR+K + L
Sbjct: 35 GMSRAELENFFEKLGEKKFRAGQVMKWMHQYFVTDFAEMTNISGK----LRAKLEQLCEI 90
Query: 68 LHSVV---DSSDDVTTKLLVKLQNG--GFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCIS 122
V S D T K + ++ +G VE V++ + G R TLCIS
Sbjct: 91 KAPEVVHRHYSKDGTRKWVFRVGDGTGSLVETVLIPAEDKTG----------LRKTLCIS 140
Query: 123 SQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHAS-----------RLSNIRNVVFMGM 171
SQVGC + C+FC+TG GF+ +L+ EI+ QL A+ R ++ NVV MGM
Sbjct: 141 SQVGCALDCSFCSTGKQGFQRDLTPDEIIGQLWVANQSYMEDVPVAERTRSVTNVVMMGM 200
Query: 172 GEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAP 230
GEPL NY A++ ++ IM + +S +R+T+ST G+V I++ D+ + LA+SLHAP
Sbjct: 201 GEPLLNYDAVLSSMHIMLDDFAYGMSKRRVTLSTSGVVPKIDQLAQDI-DVALAISLHAP 259
Query: 231 VQDVRCQIMPAARAFPLEKLMNALKEY-----QKNSQQKIFIEYIMLDGVNDEEQHAHQL 285
++R +++P + +PL +L+ A + Y +++++ + IEY+MLDGVND +HA Q+
Sbjct: 260 NDELRNELVPINKKYPLAQLIAACQRYINKDGNESARKHVTIEYVMLDGVNDSLEHAQQM 319
Query: 286 GKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISG 345
+LL+ +NLIPFNP R SS +++ +FQK L + + T+R+ G DI
Sbjct: 320 IRLLKNLPSKINLIPFNPFPHAPYGR-SSRNRIIAFQKALSDAGFV-CTIRQTRGDDIDA 377
Query: 346 ACGQLVVNLPDK 357
ACGQLV + D+
Sbjct: 378 ACGQLVGQVADR 389
>gi|395227152|ref|ZP_10405480.1| 23S rRNA methyltransferase [Citrobacter sp. A1]
gi|420366694|ref|ZP_14867527.1| ribosomal RNA large subunit methyltransferase N [Shigella flexneri
1235-66]
gi|421845430|ref|ZP_16278584.1| ribosomal RNA large subunit methyltransferase N [Citrobacter
freundii ATCC 8090 = MTCC 1658]
gi|424731693|ref|ZP_18160275.1| 23s rrna methyltransferase [Citrobacter sp. L17]
gi|391324001|gb|EIQ80616.1| ribosomal RNA large subunit methyltransferase N [Shigella flexneri
1235-66]
gi|394719335|gb|EJF24940.1| 23S rRNA methyltransferase [Citrobacter sp. A1]
gi|411773333|gb|EKS56892.1| ribosomal RNA large subunit methyltransferase N [Citrobacter
freundii ATCC 8090 = MTCC 1658]
gi|422893831|gb|EKU33647.1| 23s rrna methyltransferase [Citrobacter sp. L17]
gi|455641364|gb|EMF20535.1| ribosomal RNA large subunit methyltransferase N [Citrobacter
freundii GTC 09479]
Length = 388
Score = 195 bits (495), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 107/259 (41%), Positives = 155/259 (59%), Gaps = 16/259 (6%)
Query: 112 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN--------- 162
P R+TLC+SSQVGC + C FC+T GF NL EI+ Q+ A+++
Sbjct: 114 PEDDRATLCVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVGAVKATGVRP 173
Query: 163 IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 221
I NVV MGMGEPL N +V A+ IM F +S +R+T+ST G+V A++K D+ +
Sbjct: 174 ITNVVMMGMGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDV 232
Query: 222 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDE 278
LA+SLHAP ++R +I+P + + +E + A++ Y + S Q ++ IEY+MLD +ND
Sbjct: 233 ALAISLHAPNDEIRDEIVPINKKYNIETFLGAVRRYLEKSNANQGRVTIEYVMLDHINDG 292
Query: 279 EQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQ 338
+HAHQL +LL+ +NLIP+NP R SS+ ++ F K+L SY T VRK
Sbjct: 293 TEHAHQLAELLKDTPCKINLIPWNPFPGAPYGR-SSNSRIDRFSKVLM-SYGFTTIVRKT 350
Query: 339 MGQDISGACGQLVVNLPDK 357
G DI ACGQL ++ D+
Sbjct: 351 RGDDIDAACGQLAGDVIDR 369
>gi|205829717|sp|A4VNX4.2|RLMN_PSEU5 RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
Length = 382
Score = 195 bits (495), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 128/356 (35%), Positives = 195/356 (54%), Gaps = 38/356 (10%)
Query: 18 FEKAGIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHSVV---DS 74
FE G K+ + K++ ++D +L A LR K K + D
Sbjct: 22 FESIGEKRFRAGQVMKWIHHFGVDDFDAMSNLGKA----LREKLKACAEIRGPEIVSEDI 77
Query: 75 SDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFC 134
S D T K +V++ +G VE V + P G R TLC+SSQ GC + C+FC
Sbjct: 78 SSDGTRKWVVRVASGSCVETVYI--------------PQGGRGTLCVSSQAGCALDCSFC 123
Query: 135 ATGTMGFKSNLSSGEIVEQLVHASRL---------SNIRNVVFMGMGEPLNNYAALVEAV 185
+TG GF SNL++ E++ Q+ A++ I NVV MGMGEPL N+ +V A+
Sbjct: 124 STGKQGFNSNLTAAEVIGQVWIANKSFGTVPAKIDRAITNVVMMGMGEPLLNFDNVVAAM 183
Query: 186 RIMT-GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARA 244
+IM L + +S +++T+ST G+V I++ + + ++LA+SLHAP + +R Q++P +
Sbjct: 184 QIMMDDLGYGISKRKVTLSTSGVVPMIDEL-AKVIDVSLALSLHAPNEALRDQLVPINKK 242
Query: 245 FPLEKLMNALKEYQKNSQQK--IFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFN 302
+PL+ L+ A K Y +K + IEY +L GVND+ +HA Q+ LL +NLIPFN
Sbjct: 243 YPLDVLLAACKRYVSRLGEKRVLTIEYTLLKGVNDQPEHAEQMIALLADIPCKINLIPFN 302
Query: 303 PIGSVSQFRTSSDDKVSSFQKIL-RGSYNIRTTVRKQMGQDISGACGQLVVNLPDK 357
P S + S++ + FQ IL +G +N+ TVR G+DI ACGQLV + D+
Sbjct: 303 PFPH-SGYERPSNNAIRRFQDILHKGGHNV--TVRTTRGEDIDAACGQLVGQVLDR 355
>gi|405375716|ref|ZP_11029742.1| Ribosomal RNA large subunit methyltransferase N [Chondromyces
apiculatus DSM 436]
gi|397086080|gb|EJJ17224.1| Ribosomal RNA large subunit methyltransferase N [Myxococcus sp.
(contaminant ex DSM 436)]
Length = 355
Score = 195 bits (495), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 123/349 (35%), Positives = 188/349 (53%), Gaps = 39/349 (11%)
Query: 19 EKAGIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKFK--PLTSTLHSVVDSSD 76
E+ G + P +++++ + +DE L A LR++ + PL L S
Sbjct: 17 EELGERAFRAPQLYRWLHQRGATSFDEMTDLSKALREKLRARAEIIPLVKDLEQ---RSI 73
Query: 77 DVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCAT 136
D T K K ++G F+E+V M P R TLC+S+QVGC M C+FC T
Sbjct: 74 DGTIKYRWKTRDGRFIESVYM--------------PAEDRRTLCVSTQVGCAMACSFCMT 119
Query: 137 GTMGFKSNLSSGEIVEQLVHA-----------SRLSNIRNVVFMGMGEPLNNYAALVEAV 185
GTMG K NL++ EIV Q VHA L + N+VFMGMGEPL+N+ L A+
Sbjct: 120 GTMGLKRNLTASEIVAQ-VHAVNREVRKNEGHETLRPLSNLVFMGMGEPLHNFENLKTAL 178
Query: 186 RIMT---GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAA 242
I+ G F S + ITVSTVG+V I +F + + LA+SL+A + R + MP
Sbjct: 179 AILQSQDGPNF--SHRHITVSTVGLVPMIERFGKE-TDVKLAISLNASTDEQRSKTMPVN 235
Query: 243 RAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFN 302
R + + L++A + + ++I EY+++ G ND ++ AH+L +LL+ V VNLIP+N
Sbjct: 236 RKWNIAALLDACRTFPLRQGRRITFEYVLIKGFNDADEDAHRLIELLKGIPVKVNLIPYN 295
Query: 303 PIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLV 351
+ F T+ +++ F+ IL + + +R+ G+DI+GACGQL
Sbjct: 296 ENPGLG-FHTTGEERAEEFRAILADGH-VAAYIRRNRGRDIAGACGQLA 342
>gi|376285007|ref|YP_005158217.1| hypothetical protein CD31A_1519 [Corynebacterium diphtheriae 31A]
gi|371578522|gb|AEX42190.1| hypothetical protein CD31A_1519 [Corynebacterium diphtheriae 31A]
Length = 368
Score = 195 bits (495), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 121/316 (38%), Positives = 174/316 (55%), Gaps = 29/316 (9%)
Query: 49 LPSAAYSLLRSKFKPLTSTLHSVVDSSDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNG 108
LP+AA ++ P V + D T K L KL +G +E+V+MRY +
Sbjct: 67 LPAAAREKVKDALFPQLMQPVRAVQADDGETQKTLWKLHDGTLLESVLMRYPN------- 119
Query: 109 KPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN-----I 163
R+TLCISSQ GC M C FCATG G NLS+GEIV+Q+ AS + +
Sbjct: 120 -------RATLCISSQAGCGMACPFCATGQGGLDRNLSTGEIVDQVRAASATTQAEGGRL 172
Query: 164 RNVVFMGMGEPLNNYAALVEAVRIMTG-LP--FQVSPKRITVSTVGIVHAINKFHSDLPG 220
N+VFMGMGEPL NY +V AVR +T +P F +S + +TVSTVG+ AI K +
Sbjct: 173 SNIVFMGMGEPLANYKRVVSAVRQITAPVPEGFGISQRNVTVSTVGLAPAIRKLADEDLS 232
Query: 221 LNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQ 280
+ LAVSLH P ++R ++P + + ++++A + Y S +++ IEY ++ VND+
Sbjct: 233 VTLAVSLHTPDDELRNTLVPTNNRWEVAEVLDAARYYADRSGRRVSIEYALIRDVNDQGW 292
Query: 281 HAHQLGKLLETF---QVVVNLIPFNPIGSVSQFRTSSDDKVSSF-QKILRGSYNIRTTVR 336
A LGK L V VNLIP NP S++ S D+ F ++++ + + TVR
Sbjct: 293 RADMLGKKLHKALGPLVHVNLIPLNPTPG-SKWDASPMDRQKEFVRRVI--AQGVTCTVR 349
Query: 337 KQMGQDISGACGQLVV 352
GQ+I+ ACGQL
Sbjct: 350 DTRGQEIAAACGQLAA 365
>gi|237732496|ref|ZP_04562977.1| 23S rRNA methyltransferase [Citrobacter sp. 30_2]
gi|226908035|gb|EEH93953.1| 23S rRNA methyltransferase [Citrobacter sp. 30_2]
Length = 388
Score = 195 bits (495), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 107/259 (41%), Positives = 155/259 (59%), Gaps = 16/259 (6%)
Query: 112 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN--------- 162
P R+TLC+SSQVGC + C FC+T GF NL EI+ Q+ A+++
Sbjct: 114 PEDDRATLCVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVGAVKATGVRP 173
Query: 163 IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 221
I NVV MGMGEPL N +V A+ IM F +S +R+T+ST G+V A++K D+ +
Sbjct: 174 ITNVVMMGMGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDV 232
Query: 222 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDE 278
LA+SLHAP ++R +I+P + + +E + A++ Y + S Q ++ IEY+MLD +ND
Sbjct: 233 ALAISLHAPNDEIRDEIVPINKKYNIETFLGAVRRYLEKSNANQGRVTIEYVMLDHINDG 292
Query: 279 EQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQ 338
+HAHQL +LL+ +NLIP+NP R SS+ ++ F K+L SY T VRK
Sbjct: 293 TEHAHQLAELLKDTPCKINLIPWNPFPGAPYGR-SSNSRIDRFSKVLM-SYGFTTIVRKT 350
Query: 339 MGQDISGACGQLVVNLPDK 357
G DI ACGQL ++ D+
Sbjct: 351 RGDDIDAACGQLAGDVIDR 369
>gi|261820570|ref|YP_003258676.1| ribosomal RNA large subunit methyltransferase N [Pectobacterium
wasabiae WPP163]
gi|261604583|gb|ACX87069.1| radical SAM enzyme, Cfr family [Pectobacterium wasabiae WPP163]
Length = 400
Score = 195 bits (495), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 107/259 (41%), Positives = 153/259 (59%), Gaps = 16/259 (6%)
Query: 112 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN--------- 162
P R+TLC+SSQVGC + C FC+T GF NL EI+ Q+ A+++
Sbjct: 126 PEEDRATLCVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIGAFKVTGQRP 185
Query: 163 IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 221
I NVV MGMGEPL N +V A+ IM F +S +R+T+ST G+V A++K D+ +
Sbjct: 186 ITNVVMMGMGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDV 244
Query: 222 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDE 278
LA+SLHAP D+R +IMP + + +E ++A++ Y + S Q ++ +EY+MLD +ND
Sbjct: 245 ALAISLHAPTDDIRNEIMPINKKYNIEMFLSAVRRYLEKSNANQGRVTVEYVMLDHINDG 304
Query: 279 EQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQ 338
+HAHQL + L+ +NLIP+NP R SS+ +V F K+L Y T VRK
Sbjct: 305 TEHAHQLAECLKDTPCKINLIPWNPFPGAPYGR-SSNSRVDRFSKVLM-EYGFTTIVRKT 362
Query: 339 MGQDISGACGQLVVNLPDK 357
G DI ACGQL + D+
Sbjct: 363 RGDDIDAACGQLAGEVVDR 381
>gi|71892305|ref|YP_278039.1| pyruvate formate lyase activating enzyme 2 [Candidatus Blochmannia
pennsylvanicus str. BPEN]
gi|123761466|sp|Q492D9.1|RLMN_BLOPB RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|71796411|gb|AAZ41162.1| putative pyruvate formate lyase activating enzyme 2 [Candidatus
Blochmannia pennsylvanicus str. BPEN]
Length = 373
Score = 195 bits (495), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 109/267 (40%), Positives = 162/267 (60%), Gaps = 24/267 (8%)
Query: 112 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN--------- 162
P R+TLC+SSQ+GC +GC+FC T GF NL+ EI+ Q+ A++L N
Sbjct: 106 PENKRTTLCVSSQIGCPLGCSFCGTAQQGFNRNLNVSEIIGQVWRAAQLINLNKKIKIKN 165
Query: 163 ----IRNVVFMGMGEPLNNYAALVEAVR-IMTGLPFQVSPKRITVSTVGIVHAINKFHS- 216
I N+VFMGMGEPL N +V A+R I+ F++S + IT+ST GIV I K +
Sbjct: 166 NRFPITNIVFMGMGEPLLNIVNVVSAIRIILDDFGFKLSKRHITLSTAGIVPGIEKLKNM 225
Query: 217 -DLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQ---KNSQQKIFIEYIML 272
D+P LA+SLHAP +R +IMP + + + ++ A + Y K++ +I IEY++L
Sbjct: 226 IDIP---LAISLHAPNDIIRNKIMPINKKYNINSVLEAARRYSMDTKSNHGRITIEYVLL 282
Query: 273 DGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIR 332
+ND+ HAHQL K L+ +NLIP+NPI ++ ++ SS ++ +F K+L YNI
Sbjct: 283 KNINDDVLHAHQLAKQLQGIPCKINLIPWNPIPNI-RYACSSQIRMRAFLKVLL-KYNIV 340
Query: 333 TTVRKQMGQDISGACGQLVVNLPDKIS 359
T +RK G DI+ ACGQL + ++I+
Sbjct: 341 TIIRKIRGADINAACGQLTGEVINRIN 367
>gi|392961054|ref|ZP_10326517.1| Ribosomal RNA large subunit methyltransferase N [Pelosinus
fermentans DSM 17108]
gi|421055044|ref|ZP_15518008.1| radical SAM enzyme, Cfr family [Pelosinus fermentans B4]
gi|421060825|ref|ZP_15523248.1| Ribosomal RNA large subunit methyltransferase N [Pelosinus
fermentans B3]
gi|421068037|ref|ZP_15529424.1| Ribosomal RNA large subunit methyltransferase N [Pelosinus
fermentans A12]
gi|421071924|ref|ZP_15533037.1| Ribosomal RNA large subunit methyltransferase N [Pelosinus
fermentans A11]
gi|392440147|gb|EIW17835.1| radical SAM enzyme, Cfr family [Pelosinus fermentans B4]
gi|392445042|gb|EIW22391.1| Ribosomal RNA large subunit methyltransferase N [Pelosinus
fermentans A12]
gi|392446512|gb|EIW23797.1| Ribosomal RNA large subunit methyltransferase N [Pelosinus
fermentans A11]
gi|392454056|gb|EIW30908.1| Ribosomal RNA large subunit methyltransferase N [Pelosinus
fermentans B3]
gi|392454305|gb|EIW31142.1| Ribosomal RNA large subunit methyltransferase N [Pelosinus
fermentans DSM 17108]
Length = 355
Score = 195 bits (495), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 114/332 (34%), Positives = 183/332 (55%), Gaps = 30/332 (9%)
Query: 31 IWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHSVVDSSDDVTTKLLVKLQNGG 90
+W++V + E + LL F T H +++D T K L +L +G
Sbjct: 31 VWQWVYRKKVMHFSEMTDVNKECVQLLADHFVIATLKEHCRQEAADG-TVKFLFQLFDGN 89
Query: 91 FVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEI 150
+E V+MR L ++C+++QVGC +GC+FCA+G + K +L+SGEI
Sbjct: 90 LIETVLMRNKFGL--------------SVCVTTQVGCNIGCSFCASGLLKKKRDLTSGEI 135
Query: 151 VEQLVHASRL-------SNIRNVVFMGMGEPLNNYAALVEAVRIM---TGLPFQVSPKRI 200
VEQ++ + + +VV MG+GEPL+N+ L++ + I+ GL ++ +RI
Sbjct: 136 VEQIMKVEQYLDQENQEERVSHVVVMGIGEPLDNFVNLIDFLLIIKEHNGLA--IAARRI 193
Query: 201 TVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKN 260
TVST G+ I +F +NLA+SLHAP ++R +IM R F +E++M A+ Y
Sbjct: 194 TVSTSGLADRIVEFADTNLQVNLAISLHAPNNELRSRIMKINRVFSIEQIMQAVDYYLSK 253
Query: 261 SQQKIFIEYIMLDGVNDEEQHAHQLGKLL--ETFQVVVNLIPFNPIGSVSQFRTSSDDKV 318
+ ++I +EYI+L +ND QHA +L +L+ V VNLIP+NP+ SQ++ S + +
Sbjct: 254 TNRRITLEYILLKDMNDSSQHALELAELIGDRKKNVNVNLIPYNPVDEHSQYQRSELEAM 313
Query: 319 SSFQKILRGSYNIRTTVRKQMGQDISGACGQL 350
+F IL+ + I + R + G DI ACGQL
Sbjct: 314 RTFYDILKKN-GIHCSKRLEHGTDIDAACGQL 344
>gi|416218218|ref|ZP_11624766.1| Cfr family radical SAM protein [Moraxella catarrhalis 7169]
gi|416237493|ref|ZP_11631003.1| Cfr family radical SAM protein [Moraxella catarrhalis BC1]
gi|326559876|gb|EGE10276.1| Cfr family radical SAM protein [Moraxella catarrhalis 7169]
gi|326569638|gb|EGE19690.1| Cfr family radical SAM protein [Moraxella catarrhalis BC1]
Length = 395
Score = 195 bits (495), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 119/299 (39%), Positives = 173/299 (57%), Gaps = 28/299 (9%)
Query: 75 SDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFC 134
S D T K + ++ G VE V++ D GK G R TLCISSQVGC + C+FC
Sbjct: 90 SQDGTRKWVFEVAGGSLVETVLIPADD--GKQFG-------RKTLCISSQVGCALDCSFC 140
Query: 135 ATGTMGFKSNLSSGEIVEQLVHAS-----------RLSNIRNVVFMGMGEPLNNYAALVE 183
+TG GF+ +L+ EI+ QL A+ R + + NVV MGMGEPL NY +V
Sbjct: 141 STGKQGFERDLTPSEIIGQLWVANQSYMENVPPTERENRVTNVVMMGMGEPLLNYDPVVA 200
Query: 184 AVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAA 242
++ +M F +S +R+T+ST G+V + D+ + LA+SLHAP ++R +++P
Sbjct: 201 SMSLMLDDHAFGLSKRRVTLSTSGVVPKMYDLAKDI-DVALAISLHAPNDELRNELVPIN 259
Query: 243 RAFPLEKLMNALKE--YQKNSQQK--IFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNL 298
+ +PL+ L+ A K Y +N + K I IEY+ML GVND ++HAHQL LL+ +NL
Sbjct: 260 KKYPLKDLIKAAKSYVYDENPRHKKHITIEYVMLAGVNDSDEHAHQLVDLLKDLPSKINL 319
Query: 299 IPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDK 357
IPFNP R SS++++ +F IL + T+R+ G DI ACGQLV + D+
Sbjct: 320 IPFNPFPHAPYGR-SSNNRIHAFSHILNQA-GFVCTIRQTRGDDIDAACGQLVGQVADR 376
>gi|419076554|ref|ZP_13622068.1| 23S rRNA methyltransferase [Escherichia coli DEC3F]
gi|377920951|gb|EHU84965.1| 23S rRNA methyltransferase [Escherichia coli DEC3F]
Length = 336
Score = 195 bits (495), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 108/259 (41%), Positives = 156/259 (60%), Gaps = 16/259 (6%)
Query: 112 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN--------- 162
P R+TLC+SSQVGC + C FC+T GF NL EI+ Q+ A+++
Sbjct: 62 PEDDRATLCVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVGAAKVTGQRP 121
Query: 163 IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 221
I NVV MGMGEPL N +V A+ IM F +S +R+T+ST G+V A++K D+ +
Sbjct: 122 ITNVVMMGMGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDV 180
Query: 222 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDE 278
LA+SLHAP ++R +I+P + + +E + A++ Y + S Q ++ IEY+MLD VND
Sbjct: 181 ALAISLHAPNDEIRDEIVPINKKYNIETFLAAVRRYLEKSNANQGRVTIEYVMLDHVNDG 240
Query: 279 EQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQ 338
+HAHQL +LL+ +NLIP+NP + R SS+ ++ F K+L SY T VRK
Sbjct: 241 TEHAHQLAELLKDTPCKINLIPWNPFPAAPYGR-SSNSRIDRFSKVLM-SYGFTTIVRKT 298
Query: 339 MGQDISGACGQLVVNLPDK 357
G DI ACGQL ++ D+
Sbjct: 299 RGDDIDAACGQLAGDVIDR 317
>gi|416787465|ref|ZP_11879529.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O157:H- str. 493-89]
gi|416799095|ref|ZP_11884444.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O157:H- str. H 2687]
gi|420281761|ref|ZP_14783997.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
TW06591]
gi|425268347|ref|ZP_18659985.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
5412]
gi|209763358|gb|ACI79991.1| hypothetical protein ECs3379 [Escherichia coli]
gi|320646304|gb|EFX15231.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O157:H- str. 493-89]
gi|320651809|gb|EFX20189.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O157:H- str. H 2687]
gi|390781098|gb|EIO48787.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
TW06591]
gi|408182466|gb|EKI08972.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
5412]
Length = 384
Score = 195 bits (495), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 108/259 (41%), Positives = 156/259 (60%), Gaps = 16/259 (6%)
Query: 112 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN--------- 162
P R+TLC+SSQVGC + C FC+T GF NL EI+ Q+ A+++
Sbjct: 110 PEDDRATLCVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVGAAKVTGQRP 169
Query: 163 IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 221
I NVV MGMGEPL N +V A+ IM F +S +R+T+ST G+V A++K D+ +
Sbjct: 170 ITNVVMMGMGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDV 228
Query: 222 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDE 278
LA+SLHAP ++R +I+P + + +E + A++ Y + S Q ++ IEY+MLD VND
Sbjct: 229 ALAISLHAPNDEIRDEIVPINKKYNIETFLAAVRRYLEKSNANQGRVTIEYVMLDHVNDG 288
Query: 279 EQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQ 338
+HAHQL +LL+ +NLIP+NP + R SS+ ++ F K+L SY T VRK
Sbjct: 289 TEHAHQLAELLKDTPCKINLIPWNPFPAAPYGR-SSNSRIDRFSKVLM-SYGFTTIVRKT 346
Query: 339 MGQDISGACGQLVVNLPDK 357
G DI ACGQL ++ D+
Sbjct: 347 RGDDIDAACGQLAGDVIDR 365
>gi|160933496|ref|ZP_02080884.1| hypothetical protein CLOLEP_02342 [Clostridium leptum DSM 753]
gi|156867373|gb|EDO60745.1| 23S rRNA m2A2503 methyltransferase [Clostridium leptum DSM 753]
Length = 359
Score = 195 bits (495), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 114/340 (33%), Positives = 187/340 (55%), Gaps = 20/340 (5%)
Query: 14 IRAEFEKAGIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHSVVD 73
+RA+ + G + I++++ + ++E L L K+ + + + +
Sbjct: 19 LRADMKIQGQPSYKALQIYRWLHRGVS-SFEEMTDLSKIVRQFLTEKYYISVARVENKLV 77
Query: 74 SSDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNF 133
S D T K L +G VEAV+M Y +G+ ++CIS+QVGCKMGC F
Sbjct: 78 SDYDNTIKYLFSFADGQCVEAVLMEYQ------HGR--------SICISTQVGCKMGCTF 123
Query: 134 CATGTMGFKSNLSSGEIVEQLVHASRLSNIR--NVVFMGMGEPLNNYAALVEAVRIMTGL 191
CATG GF+ NL++ E++ Q+ A + + +R N+V MGMGEPL+NY ++ +R+++
Sbjct: 124 CATGLGGFQRNLTASEMLSQVQAAQKDAGVRISNIVLMGMGEPLDNYNQVIRFLRLVSSQ 183
Query: 192 P-FQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKL 250
+ + I++ST G+V I + L L+VSLHAP +R + MP R +P+E+L
Sbjct: 184 EGMNLGMRHISLSTCGLVDRIYDLAEENLQLTLSVSLHAPNNAIRSRTMPVNRKYPIEEL 243
Query: 251 MNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQF 310
+ A + Y + ++I EY M+DGVND + A +L L+ VNLIP NP+ +
Sbjct: 244 LKACRYYAGRTGRRISFEYAMIDGVNDSDGCAKELAARLKGMLCHVNLIPVNPVREAG-Y 302
Query: 311 RTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 350
+ S ++ +F +IL + I TVR+ +G DI+ +CGQL
Sbjct: 303 QKSGRERQQAFIRILERA-GITATVRRTLGADINASCGQL 341
>gi|375106264|ref|ZP_09752525.1| 23S rRNA m2A2503 methyltransferase [Burkholderiales bacterium
JOSHI_001]
gi|374666995|gb|EHR71780.1| 23S rRNA m2A2503 methyltransferase [Burkholderiales bacterium
JOSHI_001]
Length = 377
Score = 195 bits (495), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 123/306 (40%), Positives = 166/306 (54%), Gaps = 34/306 (11%)
Query: 74 SSDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNF 133
+S D T K L + G VE V + P R TLCISSQ GC +GC F
Sbjct: 73 TSADGTVKWLFDVGGGNAVETVFI--------------PEDDRGTLCISSQAGCAVGCRF 118
Query: 134 CATGTMGFKSNLSSGEIVEQLVHA---------SRLSNIRNVVFMGMGEPLNNYAALVEA 184
C+TG GF NLS+GEI+ QL HA S I NVV MGMGEPL NYAA++ A
Sbjct: 119 CSTGHQGFSRNLSTGEIIAQLWHAEHALRERFGSTERVISNVVMMGMGEPLQNYAAVIPA 178
Query: 185 VRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAAR 243
+R M + +S +R+TVST G+V I+ + P + LAVSLHAP ++R +++P +
Sbjct: 179 LRTMLDDHGYGLSRRRVTVSTSGMVAKIDTLRDECP-VALAVSLHAPTDELRNELVPLNK 237
Query: 244 AFPLEKLMNALKEYQKNSQQK-IFIEYIMLDGVNDEEQHAHQLGKLLE------TFQVVV 296
+ LM A + Y + + I EY MLDGVND A QL L++
Sbjct: 238 KDGIVALMQACERYLSAAPRDFITFEYCMLDGVNDTPAQARQLLDLVQGRAGAPRVPCKF 297
Query: 297 NLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPD 356
NLIPFNP S SS ++V++F K+L+ + TT+RK G DI+ ACGQL + D
Sbjct: 298 NLIPFNPF-PASGLTRSSPERVAAFAKVLQDG-GVVTTIRKTRGDDIAAACGQLAGQVQD 355
Query: 357 KISAKS 362
+ +A +
Sbjct: 356 RTAAAT 361
>gi|375291169|ref|YP_005125709.1| hypothetical protein CD241_1447 [Corynebacterium diphtheriae 241]
gi|376246001|ref|YP_005136240.1| hypothetical protein CDHC01_1446 [Corynebacterium diphtheriae HC01]
gi|371580840|gb|AEX44507.1| hypothetical protein CD241_1447 [Corynebacterium diphtheriae 241]
gi|372108631|gb|AEX74692.1| hypothetical protein CDHC01_1446 [Corynebacterium diphtheriae HC01]
Length = 368
Score = 195 bits (495), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 125/319 (39%), Positives = 175/319 (54%), Gaps = 35/319 (10%)
Query: 49 LPSAAYSLLRSKFKPLTSTLHSVVDSSDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNG 108
LP+AA ++ P V + D T K L KL +G +E+V+MRY +
Sbjct: 67 LPAAAREKVKDALFPQLMQPVRAVQADDGETQKTLWKLHDGTLLESVLMRYPN------- 119
Query: 109 KPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHAS--------RL 160
R+TLCISSQ GC M C FCATG G NLS+GEIV+Q+ AS RL
Sbjct: 120 -------RATLCISSQAGCGMACPFCATGQGGLDRNLSTGEIVDQVRAASATMQAEGGRL 172
Query: 161 SNIRNVVFMGMGEPLNNYAALVEAVRIMTG-LP--FQVSPKRITVSTVGIVHAINKFHSD 217
SNI VFMGMGEPL NY +V AVR +T +P F +S + +TVSTVG+ AI K +
Sbjct: 173 SNI---VFMGMGEPLANYKRVVSAVRQITAPVPEGFGISQRNVTVSTVGLAPAIRKLADE 229
Query: 218 LPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVND 277
+ LAVSLH P ++R ++P + + ++++A + Y S +++ IEY ++ VND
Sbjct: 230 DLSVTLAVSLHTPDDELRNTLVPTNNRWEVAEVLDAARYYADRSGRRVSIEYALIRDVND 289
Query: 278 EEQHAHQLGKLLETF---QVVVNLIPFNPIGSVSQFRTSSDDKVSSF-QKILRGSYNIRT 333
+ A LGK L V VNLIP NP S++ S D+ F ++++ + +
Sbjct: 290 QGWRADMLGKKLHKALGPLVHVNLIPLNPTPG-SKWDASPMDRQKEFVRRVI--AQGVTC 346
Query: 334 TVRKQMGQDISGACGQLVV 352
TVR GQ+I+ ACGQL
Sbjct: 347 TVRDTRGQEIAAACGQLAA 365
>gi|283786133|ref|YP_003365998.1| radical SAM superfamily protein [Citrobacter rodentium ICC168]
gi|282949587|emb|CBG89205.1| radical SAM superfamily protein [Citrobacter rodentium ICC168]
Length = 388
Score = 195 bits (495), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 108/259 (41%), Positives = 155/259 (59%), Gaps = 16/259 (6%)
Query: 112 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN--------- 162
P R+TLC+SSQVGC + C FC+T GF NL EI+ Q+ A+++
Sbjct: 114 PEDDRATLCVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVGAAKVTGQRP 173
Query: 163 IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 221
I NVV MGMGEPL N +V A+ IM F +S +R+T+ST G+V A++K D+ +
Sbjct: 174 ITNVVMMGMGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDV 232
Query: 222 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDE 278
LA+SLHAP ++R +I+P + + +E + A++ Y + S Q ++ IEY+MLD VND
Sbjct: 233 ALAISLHAPNDEIRDEIVPINKKYNIETFLAAVRRYLEKSNANQGRVTIEYVMLDHVNDG 292
Query: 279 EQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQ 338
+HAHQL +LL+ +NLIP+NP R SS+ ++ F K+L SY T VRK
Sbjct: 293 TEHAHQLAELLKDTPCKINLIPWNPFPGAPYGR-SSNSRIDRFSKVLM-SYGFTTIVRKT 350
Query: 339 MGQDISGACGQLVVNLPDK 357
G DI ACGQL ++ D+
Sbjct: 351 RGDDIDAACGQLAGDVIDR 369
>gi|451936487|ref|YP_007460341.1| ribosomal RNA large subunit methyltransferase N [Candidatus
Kinetoplastibacterium oncopeltii TCC290E]
gi|451777410|gb|AGF48385.1| ribosomal RNA large subunit methyltransferase N [Candidatus
Kinetoplastibacterium oncopeltii TCC290E]
Length = 379
Score = 195 bits (495), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 128/327 (39%), Positives = 173/327 (52%), Gaps = 44/327 (13%)
Query: 57 LRSKFKPLTSTLHSVVDS---SDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPG 113
LR K K ++ ++S S D T K L N +E V + P
Sbjct: 57 LRHKLKEISKIEAMPIESETLSKDGTIKWLFDAGNSNAIETVFI--------------PE 102
Query: 114 GPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN----------- 162
R TLCISSQ GC + C FCATG GF NLS+ EIV QL A R N
Sbjct: 103 KNRRTLCISSQAGCAVNCAFCATGHQGFNRNLSANEIVGQLWSAQRSINLNLITGIEDLN 162
Query: 163 -----------IRNVVFMGMGEPLNNYAALVEAVRIMTGL-PFQVSPKRITVSTVGIVHA 210
I NVVFMGMGEPL NY ++++++++ + + S ++ITVST GIV
Sbjct: 163 NKNTIKSGNNLITNVVFMGMGEPLLNYKQVIKSIKLLLDVNAYGFSRRKITVSTSGIVPM 222
Query: 211 INKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQK-IFIEY 269
I+K D P ++LAVSLHA D+R +++P + +PL +L+ + K Y S + I EY
Sbjct: 223 IDKLARDCP-VSLAVSLHAANDDLRNKLVPINKKYPLNELIESCKRYITRSPRDFITFEY 281
Query: 270 IMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSY 329
ML GVND ++H +L L+ + +NLIPFN S S FR + +K++SF L S
Sbjct: 282 CMLSGVNDTDKHIKELINLVSQIKCKINLIPFNSFES-SDFRAPTIEKINSFANKLLNS- 339
Query: 330 NIRTTVRKQMGQDISGACGQLVVNLPD 356
I TTVRK G DI ACGQL N+ +
Sbjct: 340 GIMTTVRKTRGDDIHAACGQLAGNVKN 366
>gi|404481896|ref|ZP_11017125.1| 23S rRNA methyltransferase [Clostridiales bacterium OBRC5-5]
gi|404344866|gb|EJZ71221.1| 23S rRNA methyltransferase [Clostridiales bacterium OBRC5-5]
Length = 346
Score = 195 bits (495), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 116/315 (36%), Positives = 176/315 (55%), Gaps = 27/315 (8%)
Query: 43 WDEFPSLPSAAYSLLRSKFKPLTSTLH----SVVDSSDDVTTKLLVKLQNGGFVEAVIMR 98
+DE +L A R K K TS + V S D T K L L++G +E+V M+
Sbjct: 41 FDECTNLSKA----FREKLKESTSLTNLKAVEVFKSKLDGTQKYLFALEDGNIIESVRMK 96
Query: 99 YDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHAS 158
Y+ +++CISSQVGC+MGC FCA+ G NLS+ E+++Q+
Sbjct: 97 YEHG--------------NSVCISSQVGCRMGCKFCASTLDGLVRNLSASEMLDQIYSIQ 142
Query: 159 RL--SNIRNVVFMGMGEPLNNYAALVEAVRIMTG-LPFQVSPKRITVSTVGIVHAINKFH 215
+L I N+V MG GEP++NY +V+ V+I++ + +S + ITVST GIV I
Sbjct: 143 KLLGERISNIVVMGSGEPMDNYDNIVKFVKIISSEMGLNISQRNITVSTCGIVPKIRALA 202
Query: 216 SDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGV 275
+ + LA+SLHAP ++R IMP A + L+ +++A Y K + +++ EY ++ GV
Sbjct: 203 DEGLSITLALSLHAPNDEIRKTIMPVANKYALKDVISACDYYFKKTGRRVSYEYSLVAGV 262
Query: 276 NDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTV 335
ND + A L KL+ + +NLIP NPI F+ S K+ +F+ L + + TV
Sbjct: 263 NDNIKEAMNLVKLVNGRNIHINLIPVNPIKE-RDFKQSDKLKIKAFRDFLE-KHRVNATV 320
Query: 336 RKQMGQDISGACGQL 350
R++MG+DI GACGQL
Sbjct: 321 RREMGRDIDGACGQL 335
>gi|344942369|ref|ZP_08781657.1| Ribosomal RNA large subunit methyltransferase N [Methylobacter
tundripaludum SV96]
gi|344263561|gb|EGW23832.1| Ribosomal RNA large subunit methyltransferase N [Methylobacter
tundripaludum SV96]
Length = 370
Score = 195 bits (495), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 109/252 (43%), Positives = 161/252 (63%), Gaps = 9/252 (3%)
Query: 112 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQL-VHASRL---SNIRNVV 167
P R TLC+SSQ+GC + C FC+T GF NL++ EI+ QL V RL + I NVV
Sbjct: 106 PEEGRGTLCVSSQIGCALACTFCSTAQQGFNRNLTTAEIIGQLFVAQKRLGPGNRITNVV 165
Query: 168 FMGMGEPLNNYAALVEAVRIMT-GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVS 226
MGMGEPL N+ +V A+ +M F +S +R+T+ST G+V A+ + + + ++LAVS
Sbjct: 166 MMGMGEPLLNFDNVVAAMNLMMDDFTFGLSKRRVTISTSGVVPAMYRL-TQVCDVSLAVS 224
Query: 227 LHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNS-QQKIFIEYIMLDGVNDEEQHAHQL 285
LHA ++R +++P + +PL++LM A ++ K + ++ + EY+MLDG+ND Q A L
Sbjct: 225 LHAVTDELRDELVPINKKYPLKELMEACRDNAKIAPRRTVTFEYVMLDGINDSLQDARGL 284
Query: 286 GKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISG 345
KLL+T +NLIPFNP + S +R SS + ++ F+ +L + I TTVRK G+DI
Sbjct: 285 VKLLKTVPSKINLIPFNPFPN-SAYRCSSKEAINCFKTLLNDA-GIVTTVRKTRGEDIDA 342
Query: 346 ACGQLVVNLPDK 357
ACGQLV + DK
Sbjct: 343 ACGQLVGQVKDK 354
>gi|52080178|ref|YP_078969.1| ribosomal RNA large subunit methyltransferase N [Bacillus
licheniformis DSM 13 = ATCC 14580]
gi|319646042|ref|ZP_08000272.1| ribosomal RNA large subunit methyltransferase N [Bacillus sp.
BT1B_CT2]
gi|404489066|ref|YP_006713172.1| ribosomal RNA large subunit methyltransferase N [Bacillus
licheniformis DSM 13 = ATCC 14580]
gi|423682120|ref|ZP_17656959.1| ribosomal RNA large subunit methyltransferase N [Bacillus
licheniformis WX-02]
gi|81385601|sp|Q65JS3.1|RLMN_BACLD RecName: Full=Probable dual-specificity RNA methyltransferase RlmN;
AltName: Full=23S rRNA
(adenine(2503)-C(2))-methyltransferase; AltName:
Full=23S rRNA m2A2503 methyltransferase; AltName:
Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=tRNA (adenine(37)-C(2))-methyltransferase;
AltName: Full=tRNA m2A37 methyltransferase
gi|52003389|gb|AAU23331.1| Conserved hypothetical protein [Bacillus licheniformis DSM 13 =
ATCC 14580]
gi|52348057|gb|AAU40691.1| rRNA large subunit methyltransferase N [Bacillus licheniformis DSM
13 = ATCC 14580]
gi|317391792|gb|EFV72589.1| ribosomal RNA large subunit methyltransferase N [Bacillus sp.
BT1B_CT2]
gi|383438894|gb|EID46669.1| ribosomal RNA large subunit methyltransferase N [Bacillus
licheniformis WX-02]
Length = 361
Score = 195 bits (495), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 109/328 (33%), Positives = 186/328 (56%), Gaps = 27/328 (8%)
Query: 31 IWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHSVVDSSDDVTTKLLVKLQNGG 90
I++++ E +++ +L + L F LT+ +V +S D T K L +L +G
Sbjct: 43 IFEWLYEKRVTSFEKMTNLSKELRTKLNEHF-VLTTLKTAVKQTSQDGTMKFLFELHDGY 101
Query: 91 FVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEI 150
+E V+MR++ +++C+++QVGC++GC FCA+ G K NL +GEI
Sbjct: 102 TIETVLMRHEYG--------------NSVCVTTQVGCRIGCTFCASTLGGLKRNLEAGEI 147
Query: 151 VEQLVHASRL-----SNIRNVVFMGMGEPLNNYAALVEAVRIMT---GLPFQVSPKRITV 202
V Q+V + + ++V MG+GEP +N+ ++ ++I+ GL + + ITV
Sbjct: 148 VAQVVKVQQALDETDERVSSIVIMGIGEPFDNFQEMLAFLKIVNHDKGL--NIGARHITV 205
Query: 203 STVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQ 262
ST GI+ I +F + +N A+SLHAP ++R ++MP RA+ L LM A+ Y K +
Sbjct: 206 STSGIIPKIYEFADEKLQINFAISLHAPNTEIRSRLMPINRAYKLPDLMKAVDYYIKKTG 265
Query: 263 QKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQ 322
+++ EY + GVND+ +HA +L +LL+ + VNLIP N + RT +++ +F+
Sbjct: 266 RRVTFEYGLFGGVNDQVEHAEELAELLKGIKCHVNLIPVNYVPERDYVRTPK-EQIFAFE 324
Query: 323 KILRGSYNIRTTVRKQMGQDISGACGQL 350
K L+ S+ + T+R++ G DI ACGQL
Sbjct: 325 KTLK-SHGVNVTIRREQGHDIDAACGQL 351
>gi|163782714|ref|ZP_02177710.1| hypothetical protein HG1285_15301 [Hydrogenivirga sp. 128-5-R1-1]
gi|159881835|gb|EDP75343.1| hypothetical protein HG1285_15301 [Hydrogenivirga sp. 128-5-R1-1]
Length = 349
Score = 195 bits (495), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 127/346 (36%), Positives = 183/346 (52%), Gaps = 29/346 (8%)
Query: 14 IRAEFEKAGIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRS--KFKPLTSTLHSV 71
+R F G++++ + K++ + ++ LP LL +F PL
Sbjct: 12 LRERFVSLGLEKYRAGQVLKWLYKKLTTDFSSMTDLPKEQRRLLEDTFRFHPLEKL--DR 69
Query: 72 VDSSDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGC 131
VD+ D + K L + +G VE V++R L TLC+SSQVGC +GC
Sbjct: 70 VDAPD--SRKYLFRTHDGHIVETVLIRERDHL--------------TLCVSSQVGCAVGC 113
Query: 132 NFCATGTMGFKSNLSSGEIVEQLVHASRLS--NIRNVVFMGMGEPLNNYAALVEAVRIMT 189
FCAT G + NL+S EI++Q + + S IRNVVFMGMGEPL NY + +A IM
Sbjct: 114 TFCATAIDGLRRNLTSAEILDQFLQVQKDSPEKIRNVVFMGMGEPLANYDNVRKAAEIMV 173
Query: 190 G-LPFQVSPKRITVSTVGIVHAINKFHSD--LPGLNLAVSLHAPVQDVRCQIMPAARAFP 246
+S +R+TVST G+V + + D + LNLAVSL+AP Q R IMP R
Sbjct: 174 SPWGLDLSKRRVTVSTSGLVAQLRRMAEDPIMRELNLAVSLNAPRQSTRESIMPITRKNT 233
Query: 247 LEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETF--QVVVNLIPFNPI 304
L +LM L +Y ++I +EY+++ +ND ++ A +L +LL + VNLIPFNP
Sbjct: 234 LSELMEVLVKYPLPRYRRITLEYVLIKDLNDSKRDAEELAELLRRHRKRFKVNLIPFNPD 293
Query: 305 GSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 350
++ R +V +FQK+L I T VR G D+ GACGQL
Sbjct: 294 PNLPYERPEL-TRVLNFQKVL-WERGISTFVRFSKGVDVFGACGQL 337
>gi|365157095|ref|ZP_09353376.1| ribosomal RNA large subunit methyltransferase N [Bacillus smithii
7_3_47FAA]
gi|363625829|gb|EHL76840.1| ribosomal RNA large subunit methyltransferase N [Bacillus smithii
7_3_47FAA]
Length = 365
Score = 195 bits (495), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 111/327 (33%), Positives = 184/327 (56%), Gaps = 25/327 (7%)
Query: 31 IWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHSVVD-SSDDVTTKLLVKLQNG 89
I+ ++ + ++E +LP + L F +TL ++V +S D T K L +L +G
Sbjct: 47 IYDWLYKKRVTSFEEMTNLPKSLRDKLAEHF--TITTLKTIVQQTSQDGTIKFLFELHDG 104
Query: 90 GFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGE 149
+E V+MR+ R G +++C+++QVGC++GC FCA+ G K NL +GE
Sbjct: 105 FSIETVLMRH-----------RYG---NSVCVTTQVGCRIGCTFCASTLGGLKRNLEAGE 150
Query: 150 IVEQLVHASRL-----SNIRNVVFMGMGEPLNNYAALVEAVRIMTGLP-FQVSPKRITVS 203
IV Q VH + + +VV MG+GEP +NY ++ ++I+ + + ITVS
Sbjct: 151 IVAQAVHVQKALDEMGERVSSVVIMGIGEPFDNYDQMLSFLKIINHEKGLNIGARHITVS 210
Query: 204 TVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQ 263
T GI+ I +F + +N A+SLHAP ++R ++MP RA+ L L+ A+K Y + + +
Sbjct: 211 TSGIIPKIYQFADENLQINFAISLHAPNNELRSKLMPINRAYKLPDLIEAVKYYIEKTGR 270
Query: 264 KIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQK 323
++ EY + GVND +HA +L +L++ + VNLIP N + + RT ++ F+K
Sbjct: 271 RVSFEYGLFGGVNDSVEHAEELAELIKDLKCHVNLIPVNYVPERNYVRTPR-SQIFKFEK 329
Query: 324 ILRGSYNIRTTVRKQMGQDISGACGQL 350
L+ + I T+R++ G DI ACGQL
Sbjct: 330 TLK-KHGINVTIRREHGHDIDAACGQL 355
>gi|297208138|ref|ZP_06924569.1| cfr family radical SAM enzyme [Staphylococcus aureus subsp. aureus
ATCC 51811]
gi|296887381|gb|EFH26283.1| cfr family radical SAM enzyme [Staphylococcus aureus subsp. aureus
ATCC 51811]
Length = 364
Score = 195 bits (495), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 110/313 (35%), Positives = 174/313 (55%), Gaps = 23/313 (7%)
Query: 44 DEFPSLPSAAYSLLRSKFKPLTSTLHSVVDSSDDVTTKLLVKLQNGGFVEAVIMRYDSSL 103
DE +L LL+ F T T +S D T K L +LQ+G +E V+MR+D
Sbjct: 59 DEMTNLSKDLRQLLKDNFTVTTLTTVVKQESKDG-TIKFLFELQDGYTIETVLMRHDYG- 116
Query: 104 GKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRL--- 160
+++C+++QVGC++GC FCA+ G K NL +GEIV Q++ +
Sbjct: 117 -------------NSVCVTTQVGCRIGCTFCASTLGGLKRNLEAGEIVSQVLTVQKALDA 163
Query: 161 --SNIRNVVFMGMGEPLNNYAALVEAVRIMTGL-PFQVSPKRITVSTVGIVHAINKFHSD 217
+ +V MG+GEP NY +++ +RI+ + + ITVST GI+ I F +
Sbjct: 164 TEERVSQIVIMGIGEPFENYDEMMDFLRIVNDDNSLNIGARHITVSTSGIIPRIYDFADE 223
Query: 218 LPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVND 277
+N AVSLHA +VR ++MP RA+ +EKL+ A++ YQ+ + +++ EY + GVND
Sbjct: 224 DIQINFAVSLHAAKDEVRSRLMPINRAYNVEKLIEAIQYYQEKTNRRVTFEYGLFGGVND 283
Query: 278 EEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRK 337
+ +HA +L L++ VNLIP N + + +T+ +D + F+K L+ I T+R+
Sbjct: 284 QLEHARELAHLIKGLNCHVNLIPVNHVPERNYVKTAKND-IFKFEKELK-RLGINATIRR 341
Query: 338 QMGQDISGACGQL 350
+ G DI ACGQL
Sbjct: 342 EQGLDIDAACGQL 354
>gi|260598903|ref|YP_003211474.1| ribosomal RNA large subunit methyltransferase N [Cronobacter
turicensis z3032]
gi|429101334|ref|ZP_19163308.1| Ribosomal RNA large subunit methyltransferase N [Cronobacter
turicensis 564]
gi|260218080|emb|CBA32831.1| Ribosomal RNA large subunit methyltransferase N [Cronobacter
turicensis z3032]
gi|426287983|emb|CCJ89421.1| Ribosomal RNA large subunit methyltransferase N [Cronobacter
turicensis 564]
Length = 388
Score = 195 bits (495), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 108/259 (41%), Positives = 154/259 (59%), Gaps = 16/259 (6%)
Query: 112 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN--------- 162
P R+TLC+SSQVGC + C FC+T GF NL EI+ Q+ A+++
Sbjct: 114 PEDDRATLCVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIGAAKVTGQRP 173
Query: 163 IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 221
I NVV MGMGEPL N +V A+ IM F +S +R+T+ST G+V A++K D+ +
Sbjct: 174 ITNVVMMGMGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDV 232
Query: 222 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDE 278
LA+SLHAP ++R +I+P + + +E + A++ Y S Q ++ IEY+MLD VND
Sbjct: 233 ALAISLHAPNDEIRDEIVPINKKYNIETFLAAVRRYLDKSNANQGRVTIEYVMLDHVNDG 292
Query: 279 EQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQ 338
+HAHQL +LL+ +NLIP+NP R SS+ ++ F K+L SY T VRK
Sbjct: 293 TEHAHQLAELLKDTPCKINLIPWNPFPGAPYGR-SSNSRIDRFSKVLM-SYGFTTIVRKT 350
Query: 339 MGQDISGACGQLVVNLPDK 357
G DI ACGQL ++ D+
Sbjct: 351 RGDDIDAACGQLAGDVIDR 369
>gi|262280923|ref|ZP_06058706.1| ribosomal RNA large subunit methyltransferase N [Acinetobacter
calcoaceticus RUH2202]
gi|262257823|gb|EEY76558.1| ribosomal RNA large subunit methyltransferase N [Acinetobacter
calcoaceticus RUH2202]
Length = 411
Score = 195 bits (495), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 115/302 (38%), Positives = 178/302 (58%), Gaps = 32/302 (10%)
Query: 75 SDDVTTKLLVKLQNGG--FVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCN 132
S D T K + ++ +G VE V++ + G R TLCISSQVGC + C+
Sbjct: 101 SKDGTRKWVFRVGDGAGSLVETVLIPAEDKTG----------LRKTLCISSQVGCALDCS 150
Query: 133 FCATGTMGFKSNLSSGEIVEQLVHAS-----------RLSNIRNVVFMGMGEPLNNYAAL 181
FC+TG GF+ +L+ EI+ QL A+ R ++ NVV MGMGEPL NY A+
Sbjct: 151 FCSTGKQGFQRDLTPDEIIGQLWMANYSYMEEVPVAERERSVTNVVMMGMGEPLLNYDAV 210
Query: 182 VEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMP 240
+ +++IM + +S +R+T+ST G+V I++ D+ + LA+SLHAP ++R +++P
Sbjct: 211 LSSMQIMLDDFAYGMSKRRVTLSTSGVVPKIDQLAKDI-DVALAISLHAPNDELRNELVP 269
Query: 241 AARAFPLEKLMNALKEY-----QKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVV 295
+ +PL +L+ A + Y ++S++ + IEY+ML+GVND +HA Q+ KLL+
Sbjct: 270 INKKYPLAQLIAACQRYIAKDGNESSRKHVTIEYVMLEGVNDHPEHAQQMIKLLKNLPSK 329
Query: 296 VNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLP 355
+NLIPFNP R SS +++ SFQK L + + T+R+ G DI ACGQLV +
Sbjct: 330 INLIPFNPFPHAPYGR-SSRNRIISFQKTLSDAGFV-CTIRQTRGDDIDAACGQLVGQVA 387
Query: 356 DK 357
D+
Sbjct: 388 DR 389
>gi|296113393|ref|YP_003627331.1| Cfr family radical SAM protein [Moraxella catarrhalis RH4]
gi|416157002|ref|ZP_11604848.1| Cfr family radical SAM protein [Moraxella catarrhalis 101P30B1]
gi|416225542|ref|ZP_11626890.1| Cfr family radical SAM protein [Moraxella catarrhalis 103P14B1]
gi|416231838|ref|ZP_11628904.1| Cfr family radical SAM protein [Moraxella catarrhalis 46P47B1]
gi|416235984|ref|ZP_11630379.1| Cfr family radical SAM protein [Moraxella catarrhalis 12P80B1]
gi|416242273|ref|ZP_11633309.1| Cfr family radical SAM protein [Moraxella catarrhalis BC7]
gi|416246881|ref|ZP_11635250.1| Cfr family radical SAM protein [Moraxella catarrhalis BC8]
gi|416249828|ref|ZP_11636925.1| Cfr family radical SAM protein [Moraxella catarrhalis CO72]
gi|416255365|ref|ZP_11639202.1| Cfr family radical SAM protein [Moraxella catarrhalis O35E]
gi|421780199|ref|ZP_16216689.1| Cfr family radical SAM protein [Moraxella catarrhalis RH4]
gi|295921087|gb|ADG61438.1| Cfr family radical SAM protein [Moraxella catarrhalis BBH18]
gi|326559237|gb|EGE09668.1| Cfr family radical SAM protein [Moraxella catarrhalis 46P47B1]
gi|326560775|gb|EGE11142.1| Cfr family radical SAM protein [Moraxella catarrhalis 103P14B1]
gi|326563516|gb|EGE13775.1| Cfr family radical SAM protein [Moraxella catarrhalis 12P80B1]
gi|326570119|gb|EGE20164.1| Cfr family radical SAM protein [Moraxella catarrhalis BC8]
gi|326570857|gb|EGE20881.1| Cfr family radical SAM protein [Moraxella catarrhalis BC7]
gi|326574406|gb|EGE24348.1| Cfr family radical SAM protein [Moraxella catarrhalis 101P30B1]
gi|326576000|gb|EGE25923.1| Cfr family radical SAM protein [Moraxella catarrhalis CO72]
gi|326576412|gb|EGE26321.1| Cfr family radical SAM protein [Moraxella catarrhalis O35E]
gi|407812993|gb|EKF83777.1| Cfr family radical SAM protein [Moraxella catarrhalis RH4]
Length = 395
Score = 195 bits (495), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 119/299 (39%), Positives = 173/299 (57%), Gaps = 28/299 (9%)
Query: 75 SDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFC 134
S D T K + ++ G VE V++ D GK G R TLCISSQVGC + C+FC
Sbjct: 90 SQDGTRKWVFEVAGGSLVETVLIPADD--GKQFG-------RKTLCISSQVGCALDCSFC 140
Query: 135 ATGTMGFKSNLSSGEIVEQLVHAS-----------RLSNIRNVVFMGMGEPLNNYAALVE 183
+TG GF+ +L+ EI+ QL A+ R + + NVV MGMGEPL NY +V
Sbjct: 141 STGKQGFERDLTPSEIIGQLWVANQSYMENVPPTERENRVTNVVMMGMGEPLLNYDPVVA 200
Query: 184 AVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAA 242
++ +M F +S +R+T+ST G+V + D+ + LA+SLHAP ++R +++P
Sbjct: 201 SMSLMLDDHAFGLSKRRVTLSTSGVVPKMYDLAKDI-DVALAISLHAPNDELRNELVPIN 259
Query: 243 RAFPLEKLMNALKE--YQKNSQQK--IFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNL 298
+ +PL+ L+ A K Y +N + K I IEY+ML GVND ++HAHQL LL+ +NL
Sbjct: 260 KKYPLKDLIKAAKSYVYDENPRHKKHITIEYVMLAGVNDSDEHAHQLVDLLKDLPSKINL 319
Query: 299 IPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDK 357
IPFNP R SS++++ +F IL + T+R+ G DI ACGQLV + D+
Sbjct: 320 IPFNPFPHAPYGR-SSNNRIHAFSHILNQA-GFVCTIRQTRGDDIDAACGQLVGQVADR 376
>gi|419706783|ref|ZP_14234293.1| Ribosomal RNA large subunit methyltransferase N [Streptococcus
salivarius PS4]
gi|383283505|gb|EIC81459.1| Ribosomal RNA large subunit methyltransferase N [Streptococcus
salivarius PS4]
Length = 369
Score = 195 bits (495), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 116/360 (32%), Positives = 194/360 (53%), Gaps = 34/360 (9%)
Query: 22 GIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKF--KPLTSTLHSVVDSSDDVT 79
G K+ IW ++ + ++E ++ + L F PL +V S D T
Sbjct: 24 GEKKFRATQIWDWLYKKRVQSFEEMTNISKDFIAKLNENFCVNPLK---QRIVQESKDGT 80
Query: 80 TKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTM 139
K L +L +G +E V+MR L ++C+++QVGC +GC FCA+G +
Sbjct: 81 VKYLFELPDGMLIETVLMRQHYGL--------------SVCVTTQVGCNIGCTFCASGLI 126
Query: 140 GFKSNLSSGEIVEQLVHASRLSNIR-------NVVFMGMGEPLNNYAALVEAVRIMT--- 189
+ +L++GEIV Q++ + + R +VV MG+GEP +NY ++ +R +
Sbjct: 127 KKQRDLTAGEIVAQIMLVQKYFDDRGDDERVSHVVVMGIGEPFDNYDNVLRFLRTINNDN 186
Query: 190 GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEK 249
GL + + ITVST G+ I +F ++ +NLAVSLHAP D+R IM R+FPLEK
Sbjct: 187 GLA--IGARHITVSTSGLAPKIKEFANEGVQVNLAVSLHAPNNDLRSSIMRINRSFPLEK 244
Query: 250 LMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVV--VNLIPFNPIGSV 307
L A++ Y + + +++ EYIML+ VND ++A +L L + + + +NLIP+NP+
Sbjct: 245 LFEAIEYYIQTTNRRVTFEYIMLNEVNDHPENAQELADLTKKIRKLSYINLIPYNPVSEH 304
Query: 308 SQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDKISAKSTPPVT 367
Q+ S+ ++V++F +L+ + + VR++ G DI ACGQL N + K+ +
Sbjct: 305 DQYSRSTKERVAAFYDVLKKN-GVNCVVRQEHGTDIDAACGQLRSNTMKRDRQKAVAEAS 363
>gi|421565597|ref|ZP_16011370.1| 23S rRNA methyltransferase [Neisseria meningitidis NM3081]
gi|433536930|ref|ZP_20493435.1| 23S rRNA methyltransferase [Neisseria meningitidis 77221]
gi|402344032|gb|EJU79174.1| 23S rRNA methyltransferase [Neisseria meningitidis NM3081]
gi|432273866|gb|ELL28963.1| 23S rRNA methyltransferase [Neisseria meningitidis 77221]
Length = 364
Score = 195 bits (495), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 120/293 (40%), Positives = 168/293 (57%), Gaps = 27/293 (9%)
Query: 75 SDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFC 134
S D T K L+ + G VE V + P R TLCISSQVGC + C FC
Sbjct: 73 SSDGTRKWLLDVGTGNGVETVFI--------------PESDRGTLCISSQVGCALECTFC 118
Query: 135 ATGTMGFKSNLSSGEIVEQLVHASRLSN--------IRNVVFMGMGEPLNNYAALVEAVR 186
+TG GF NL+S EI+ QL A++ I NVV MGMGEP+ N+ +V A+
Sbjct: 119 STGRQGFNRNLTSAEIIGQLWWANKAMGVTPKNERVISNVVMMGMGEPMANFDNVVTALS 178
Query: 187 IM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAF 245
IM + +S +R+TVST G+V +++ +P + LAVSLHA +VR QI+P + +
Sbjct: 179 IMLDDHGYGLSRRRVTVSTSGMVPQMDRLRDVMP-VALAVSLHASNDEVRNQIVPLNKKY 237
Query: 246 PLEKLMNALKEYQ-KNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPI 304
PL++LM A + Y K + I EY+MLDG+ND+ QHA +L +L++ NLIPFNP
Sbjct: 238 PLKELMAACQRYLVKAPRDFITFEYVMLDGINDKAQHARELIELVKDVPCKFNLIPFNPF 297
Query: 305 GSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDK 357
+ S + SS++ + F+ IL+ + + TVRK G DI ACGQL + DK
Sbjct: 298 PN-SGYERSSNENIRVFRDILQQAGFV-VTVRKTRGDDIDAACGQLAGQVQDK 348
>gi|255321140|ref|ZP_05362306.1| radical SAM enzyme, Cfr family [Acinetobacter radioresistens SK82]
gi|262380171|ref|ZP_06073326.1| ribosomal RNA large subunit methyltransferase N [Acinetobacter
radioresistens SH164]
gi|421464220|ref|ZP_15912910.1| 23S rRNA m2A2503 methyltransferase [Acinetobacter radioresistens
WC-A-157]
gi|255301694|gb|EET80945.1| radical SAM enzyme, Cfr family [Acinetobacter radioresistens SK82]
gi|262298365|gb|EEY86279.1| ribosomal RNA large subunit methyltransferase N [Acinetobacter
radioresistens SH164]
gi|400204973|gb|EJO35954.1| 23S rRNA m2A2503 methyltransferase [Acinetobacter radioresistens
WC-A-157]
Length = 411
Score = 195 bits (495), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 129/372 (34%), Positives = 205/372 (55%), Gaps = 43/372 (11%)
Query: 12 GIIRAE----FEKAGIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTST 67
G+ RAE FEK G K+ + K++ + ++ E ++ LR+K + L
Sbjct: 35 GMSRAELENFFEKLGEKKFRAGQVMKWMHQYFVTDFAEMTNISGK----LRAKLEQLCEI 90
Query: 68 LHSVV---DSSDDVTTKLLVKLQNGG--FVEAVIMRYDSSLGKYNGKPRPGGPRSTLCIS 122
V S D T K + ++ +G VE V++ + G R TLCIS
Sbjct: 91 KAPEVVHRHYSKDGTRKWVFRVGDGAGSLVETVLIPAEDKTGL----------RKTLCIS 140
Query: 123 SQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHAS-----------RLSNIRNVVFMGM 171
SQVGC + C+FC+TG GF+ +L+ EI+ QL A+ R ++ NVV MGM
Sbjct: 141 SQVGCALDCSFCSTGKQGFQRDLTPDEIIGQLWVANQSYMEDVPVAERTRSVTNVVMMGM 200
Query: 172 GEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAP 230
GEPL NY A++ ++ IM + +S +R+T+ST G+V I++ D+ + LA+SLHAP
Sbjct: 201 GEPLLNYDAVLSSMYIMLDDFAYGMSKRRVTLSTSGVVPKIDQLAQDI-DVALAISLHAP 259
Query: 231 VQDVRCQIMPAARAFPLEKLMNALKEY-----QKNSQQKIFIEYIMLDGVNDEEQHAHQL 285
++R +++P + +PL +L+ A + Y +++++ + IEY+MLDGVND +HA Q+
Sbjct: 260 NDELRNELVPINKKYPLAQLIAACQRYINKDGNESARKHVTIEYVMLDGVNDSLEHAQQM 319
Query: 286 GKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISG 345
+LL+ +NLIPFNP R SS +++ +FQK L + + T+R+ G DI
Sbjct: 320 IRLLKNLPSKINLIPFNPFPHAPYGR-SSRNRIIAFQKALSDAGFV-CTIRQTRGDDIDA 377
Query: 346 ACGQLVVNLPDK 357
ACGQLV + D+
Sbjct: 378 ACGQLVGQVADR 389
>gi|389573302|ref|ZP_10163377.1| Fe-S-cluster redox protein [Bacillus sp. M 2-6]
gi|388426999|gb|EIL84809.1| Fe-S-cluster redox protein [Bacillus sp. M 2-6]
Length = 362
Score = 195 bits (495), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 115/351 (32%), Positives = 193/351 (54%), Gaps = 29/351 (8%)
Query: 9 FDGGIIRAEFEKAGIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTL 68
F+ I+ ++ G K I++++ E +DE +L L+ +F +TL
Sbjct: 22 FELNEIKDWLKEQGEKPFRATQIFEWLYEKRVTSFDEMSNLSKELREKLKDQFA--ITTL 79
Query: 69 HSVV-DSSDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGC 127
+V+ +S D T K L +L +G +E V+MR++ +++C+++QVGC
Sbjct: 80 KTVIKQTSQDGTIKFLFELHDGYTIETVLMRHEYG--------------NSVCVTTQVGC 125
Query: 128 KMGCNFCATGTMGFKSNLSSGEIVEQLVHASRL-----SNIRNVVFMGMGEPLNNYAALV 182
++GC FCA+ G K NL +GEIV Q++ + + +VV MG+GEP +N+ ++
Sbjct: 126 RIGCTFCASTLGGLKRNLEAGEIVAQVLKVQQALDETDERVSSVVIMGIGEPFDNFDEML 185
Query: 183 EAVRIMT---GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIM 239
++I+ GL + + ITVST GI+ I +F + +N AVSLHAP D+R ++M
Sbjct: 186 AFLKIINHDNGL--NIGARHITVSTSGIIPKIYQFADEQMQINFAVSLHAPNTDIRSRLM 243
Query: 240 PAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLI 299
P +A+ L KLM A++ Y + + +++ EY + GVND+ HA +L LL+ + VNLI
Sbjct: 244 PINKAYKLPKLMEAIEYYIQKTGRRVSFEYGLFGGVNDQVHHAEELADLLKGIKCHVNLI 303
Query: 300 PFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 350
P N + RT +++ F+K L+ + T+R++ G DI ACGQL
Sbjct: 304 PVNYVPERDYVRTPR-EQIFLFEKTLK-ERGVNVTIRREQGHDIDAACGQL 352
>gi|358052140|ref|ZP_09146066.1| ribosomal RNA large subunit methyltransferase N [Staphylococcus
simiae CCM 7213]
gi|357258368|gb|EHJ08499.1| ribosomal RNA large subunit methyltransferase N [Staphylococcus
simiae CCM 7213]
Length = 364
Score = 195 bits (495), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 110/326 (33%), Positives = 179/326 (54%), Gaps = 23/326 (7%)
Query: 31 IWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHSVVDSSDDVTTKLLVKLQNGG 90
I++++ + D+ ++ LL+ F T T +S D T K L +LQ+G
Sbjct: 46 IFEWLYQKRVNSIDDMTNISKDLRQLLQDNFTVTTLTTVVKQESRDG-TIKFLFELQDGY 104
Query: 91 FVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEI 150
+E V+MR+D +++C+++QVGC++GC FCA+ G K NL +GEI
Sbjct: 105 TIETVLMRHDYG--------------NSVCVTTQVGCRIGCTFCASTLGGLKRNLEAGEI 150
Query: 151 VEQLVHASRL-----SNIRNVVFMGMGEPLNNYAALVEAVRIMTGL-PFQVSPKRITVST 204
V Q++ + + +V MG+GEP NY +++ ++I+ + + ITVST
Sbjct: 151 VSQVLTVQKALDETNERVSQIVIMGIGEPFENYDEMMDFLKIVNDDNSLNIGARHITVST 210
Query: 205 VGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQK 264
GI+ I F + +N AVSLHA DVR ++MP RA+ +EKL+ A+K YQ+ + ++
Sbjct: 211 SGIIPRIYDFADEDIQINFAVSLHAAKDDVRSRLMPINRAYNVEKLIEAIKYYQEKTNRR 270
Query: 265 IFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKI 324
+ EY + GVND+ +HA +L L++ VNLIP N + + +T DD + F+K
Sbjct: 271 VTFEYGLFGGVNDQLEHARELAHLIKDLNCHVNLIPVNHVPERNYVKTPKDD-IFKFEKE 329
Query: 325 LRGSYNIRTTVRKQMGQDISGACGQL 350
L+ + T+R++ G DI ACGQL
Sbjct: 330 LK-RLGVNATIRREQGSDIDAACGQL 354
>gi|402833069|ref|ZP_10881691.1| 23S rRNA m2A2503 methyltransferase [Selenomonas sp. CM52]
gi|402281436|gb|EJU30071.1| 23S rRNA m2A2503 methyltransferase [Selenomonas sp. CM52]
Length = 350
Score = 195 bits (495), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 107/314 (34%), Positives = 182/314 (57%), Gaps = 22/314 (7%)
Query: 43 WDEFPSLPSAAYSLLRSKFKPLTSTLHSVVDSSDDVTTKLLVKLQNGGFVEAVIMRYDSS 102
+ + +LP + + L +++ T L + +D++D T+K L+ +G VEAV+MR
Sbjct: 41 FSDMTNLPKSLRTELETRYTIDTPLLRARLDAADGRTSKFLLAFSDGAAVEAVLMR---- 96
Query: 103 LGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRL-- 160
+P G +++CIS+Q GC MGC+FCA+ G +L++GE++ +++ +
Sbjct: 97 --------QPYG--NSICISTQAGCNMGCSFCASTLHGLARDLTAGEMLAEVLFIEEMLR 146
Query: 161 ---SNIRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHS 216
+ +V MG GEPL NY +V+ + ++ +S + IT+ST GIV AI++
Sbjct: 147 SQGGKVDTMVLMGSGEPLMNYENVVDFLHLLHEEYVLNISYRSITLSTSGIVPAIDRLAE 206
Query: 217 DLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVN 276
+ L L++SLHAP +++R ++MP R +PL ++ A K Y + + +++ EYI++ VN
Sbjct: 207 EGMPLTLSISLHAPREELRSELMPINRKYPLSDVVAAGKRYAEKTGRRVTYEYILIRDVN 266
Query: 277 DEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVR 336
D E+ A +L +LLE VNLIP NP+ F S+++ ++F + L + I TVR
Sbjct: 267 DGEREAQELAELLEGQLASVNLIPINPVKERG-FERPSEERTAAFCRALTRRH-ITATVR 324
Query: 337 KQMGQDISGACGQL 350
++MG DI ACGQL
Sbjct: 325 REMGADIQAACGQL 338
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.320 0.136 0.398
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,686,167,377
Number of Sequences: 23463169
Number of extensions: 226809731
Number of successful extensions: 537852
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 3842
Number of HSP's successfully gapped in prelim test: 193
Number of HSP's that attempted gapping in prelim test: 518716
Number of HSP's gapped (non-prelim): 4142
length of query: 375
length of database: 8,064,228,071
effective HSP length: 144
effective length of query: 231
effective length of database: 8,980,499,031
effective search space: 2074495276161
effective search space used: 2074495276161
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 78 (34.7 bits)