BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 017203
         (375 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3RF9|A Chain A, X-Ray Structure Of Rlmn From Escherichia Coli
 pdb|3RF9|B Chain B, X-Ray Structure Of Rlmn From Escherichia Coli
          Length = 404

 Score =  195 bits (495), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 108/259 (41%), Positives = 155/259 (59%), Gaps = 16/259 (6%)

Query: 112 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN--------- 162
           P   R+TLC+SSQVGC + C FC+T   GF  NL   EI+ Q+  A+++           
Sbjct: 110 PEDDRATLCVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVGAAKVTGQRP 169

Query: 163 IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 221
           I NVV MGMGEPL N   +V A+ IM     F +S +R+T+ST G+V A++K   D+  +
Sbjct: 170 ITNVVMMGMGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDV 228

Query: 222 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDE 278
            LA+SLHAP  ++R +I+P  + + +E  + A++ Y + S   Q ++ IEY+MLD VND 
Sbjct: 229 ALAISLHAPNDEIRDEIVPINKKYNIETFLAAVRRYLEKSNANQGRVTIEYVMLDHVNDG 288

Query: 279 EQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQ 338
            +HAHQL +LL+     +NLIP+NP       R SS+ ++  F K+L  SY   T VRK 
Sbjct: 289 TEHAHQLAELLKDTPCKINLIPWNPFPGAPYGR-SSNSRIDRFSKVLM-SYGFTTIVRKT 346

Query: 339 MGQDISGACGQLVVNLPDK 357
            G DI  ACGQL  ++ D+
Sbjct: 347 RGDDIDAACGQLAGDVIDR 365


>pdb|3RFA|A Chain A, X-Ray Structure Of Rlmn From Escherichia Coli In Complex
           With S- Adenosylmethionine
 pdb|3RFA|B Chain B, X-Ray Structure Of Rlmn From Escherichia Coli In Complex
           With S- Adenosylmethionine
          Length = 404

 Score =  191 bits (484), Expect = 8e-49,   Method: Compositional matrix adjust.
 Identities = 107/259 (41%), Positives = 154/259 (59%), Gaps = 16/259 (6%)

Query: 112 PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN--------- 162
           P   R+TLC+SSQVGC + C FC+T   GF  NL   EI+ Q+  A+++           
Sbjct: 110 PEDDRATLCVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVGAAKVTGQRP 169

Query: 163 IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 221
           I NVV MGMGEPL N   +V A+ IM     F +S +R+T+ST G+V A++K   D+  +
Sbjct: 170 ITNVVMMGMGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDV 228

Query: 222 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDE 278
            LA+SLHAP  ++R +I+P  + + +E  + A++ Y + S   Q ++ IEY+MLD VND 
Sbjct: 229 ALAISLHAPNDEIRDEIVPINKKYNIETFLAAVRRYLEKSNANQGRVTIEYVMLDHVNDG 288

Query: 279 EQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQ 338
            +HAHQL +LL+     +NLIP+NP       R SS+ ++  F K+L  SY   T VRK 
Sbjct: 289 TEHAHQLAELLKDTPCKINLIPWNPFPGAPYGR-SSNSRIDRFSKVLM-SYGFTTIVRKT 346

Query: 339 MGQDISGACGQLVVNLPDK 357
            G DI  A GQL  ++ D+
Sbjct: 347 RGDDIDAAXGQLAGDVIDR 365


>pdb|3C8F|A Chain A, 4fe-4s-Pyruvate Formate-Lyase Activating Enzyme With
           Partially Disordered Adomet
 pdb|3CB8|A Chain A, 4fe-4s-Pyruvate Formate-Lyase Activating Enzyme In Complex
           With Adomet And A Peptide Substrate
          Length = 245

 Score = 35.0 bits (79), Expect = 0.068,   Method: Compositional matrix adjust.
 Identities = 15/53 (28%), Positives = 31/53 (58%), Gaps = 2/53 (3%)

Query: 256 EYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVV--VNLIPFNPIGS 306
           +Y  N   K++I Y+++ G +D++  AH+LG+       V  + L+P++ +G 
Sbjct: 154 KYLANKNVKVWIRYVVVPGWSDDDDSAHRLGEFTRDMGNVEKIELLPYHELGK 206


>pdb|1OVM|A Chain A, Crystal Structure Of Indolepyruvate Decarboxylase From
           Enterobacter Cloacae
 pdb|1OVM|B Chain B, Crystal Structure Of Indolepyruvate Decarboxylase From
           Enterobacter Cloacae
 pdb|1OVM|C Chain C, Crystal Structure Of Indolepyruvate Decarboxylase From
           Enterobacter Cloacae
 pdb|1OVM|D Chain D, Crystal Structure Of Indolepyruvate Decarboxylase From
           Enterobacter Cloacae
          Length = 552

 Score = 32.3 bits (72), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 22/74 (29%), Positives = 35/74 (47%), Gaps = 6/74 (8%)

Query: 104 GKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSNI 163
           G Y+G    G  +  +  +  V C +G  F  T T GF   L+  + +E   HA+R   +
Sbjct: 259 GTYSGSASTGAVKEAIEGADTVLC-VGTRFTDTLTAGFTHQLTPAQTIEVQPHAAR---V 314

Query: 164 RNVVFMGMGEPLNN 177
            +V F G+  P+N 
Sbjct: 315 GDVWFTGI--PMNQ 326


>pdb|1K72|A Chain A, The X-ray Crystal Structure Of Cel9g Complexed With
           Cellotriose
 pdb|1K72|B Chain B, The X-ray Crystal Structure Of Cel9g Complexed With
           Cellotriose
          Length = 614

 Score = 30.0 bits (66), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 22/92 (23%), Positives = 41/92 (44%), Gaps = 6/92 (6%)

Query: 113 GGPRS----TLCISSQVGCKMGCNFCA--TGTMGFKSNLSSGEIVEQLVHASRLSNIRNV 166
           GGP +    T  I++ V  ++ C++ A  TG +      S G+ +       +++N   +
Sbjct: 401 GGPDNADGYTDEINNYVNNEIACDYNAGFTGALAKMYKHSGGDPIPNFKAIEKITNDEVI 460

Query: 167 VFMGMGEPLNNYAALVEAVRIMTGLPFQVSPK 198
           +  G+     NY  +   V   TG P +V+ K
Sbjct: 461 IKAGLNSTGPNYTEIKAVVYNQTGWPARVTDK 492


>pdb|1GA2|A Chain A, The Crystal Structure Of Endoglucanase 9g From Clostridium
           Cellulolyticum Complexed With Cellobiose
 pdb|1GA2|B Chain B, The Crystal Structure Of Endoglucanase 9g From Clostridium
           Cellulolyticum Complexed With Cellobiose
 pdb|1G87|A Chain A, The Crystal Structure Of Endoglucanase 9g From Clostridium
           Cellulolyticum
 pdb|1G87|B Chain B, The Crystal Structure Of Endoglucanase 9g From Clostridium
           Cellulolyticum
 pdb|1KFG|A Chain A, The X-Ray Crystal Structure Of Cel9g From Clostridium
           Cellulolyticum Complexed With A Thio-Oligosaccharide
           Inhibitor
 pdb|1KFG|B Chain B, The X-Ray Crystal Structure Of Cel9g From Clostridium
           Cellulolyticum Complexed With A Thio-Oligosaccharide
           Inhibitor
          Length = 614

 Score = 30.0 bits (66), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 22/92 (23%), Positives = 41/92 (44%), Gaps = 6/92 (6%)

Query: 113 GGPRS----TLCISSQVGCKMGCNFCA--TGTMGFKSNLSSGEIVEQLVHASRLSNIRNV 166
           GGP +    T  I++ V  ++ C++ A  TG +      S G+ +       +++N   +
Sbjct: 401 GGPDNADGYTDEINNYVNNEIACDYNAGFTGALAKMYKHSGGDPIPNFKAIEKITNDEVI 460

Query: 167 VFMGMGEPLNNYAALVEAVRIMTGLPFQVSPK 198
           +  G+     NY  +   V   TG P +V+ K
Sbjct: 461 IKAGLNSTGPNYTEIKAVVYNQTGWPARVTDK 492


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.320    0.136    0.398 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,752,044
Number of Sequences: 62578
Number of extensions: 429505
Number of successful extensions: 1146
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1133
Number of HSP's gapped (non-prelim): 8
length of query: 375
length of database: 14,973,337
effective HSP length: 100
effective length of query: 275
effective length of database: 8,715,537
effective search space: 2396772675
effective search space used: 2396772675
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)