BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 017203
(375 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|A0LQM1|RLMN_SYNFM Dual-specificity RNA methyltransferase RlmN OS=Syntrophobacter
fumaroxidans (strain DSM 10017 / MPOB) GN=rlmN PE=3 SV=1
Length = 342
Score = 232 bits (592), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 130/289 (44%), Positives = 183/289 (63%), Gaps = 28/289 (9%)
Query: 73 DSSDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCN 132
+ +DD T+K L L++G +EAV++ P PRSTLC+SSQVGC +GC
Sbjct: 72 EQADDGTSKYLFGLRDGHSIEAVLI--------------PDLPRSTLCVSSQVGCALGCK 117
Query: 133 FCATGTMGFKSNLSSGEIVEQLVHASR----LSNIRNVVFMGMGEPLNNYAALVEAVRIM 188
FC TG++GFK NLS+ EIV+Q+ R S I N+VFMGMGEPL N +++ A+R++
Sbjct: 118 FCLTGSLGFKRNLSAAEIVDQVCQVQRDLGSRSRITNIVFMGMGEPLANLDSVLRAIRVI 177
Query: 189 T---GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAF 245
G+ F S +RIT+ST G+V + + + P +NLAVSLHA ++R ++MP R +
Sbjct: 178 AEPNGMAF--SHRRITLSTAGLVPQLRRLGRESP-VNLAVSLHAAENELRAELMPVNRTY 234
Query: 246 PLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNP-I 304
PLE LM A +EY +++I EYI+LDG+ND+ + A QL KLL + VNL+PFNP
Sbjct: 235 PLEVLMAACREYPLPPRKRITFEYILLDGINDDPKQAKQLVKLLHGIRAKVNLMPFNPHP 294
Query: 305 GSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVN 353
GSV FR S+ +V +FQ+ L+ + I T VR+ G +I ACGQLV
Sbjct: 295 GSV--FRKPSEQRVLAFQEALQNA-RITTHVRRSRGGEIGAACGQLVAE 340
>sp|Q1DCU1|RLMN1_MYXXD Dual-specificity RNA methyltransferase RlmN 1 OS=Myxococcus xanthus
(strain DK 1622) GN=rlmN1 PE=3 SV=1
Length = 359
Score = 229 bits (583), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 125/340 (36%), Positives = 188/340 (55%), Gaps = 23/340 (6%)
Query: 31 IWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHSVVDSSDDVTTKLLVKLQNGG 90
+W + +DE L +LR + H SSD T KLL++L +G
Sbjct: 34 LWTALYRRHATTFDELDGLKPELLRMLREHTRLGQLATHHESFSSDGFTHKLLLRLDDGQ 93
Query: 91 FVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEI 150
+E V+MR+ R+T+CIS+Q GC MGC FCATG MG +L+ GEI
Sbjct: 94 TIETVLMRFKG--------------RATVCISTQAGCAMGCVFCATGQMGLSRHLTPGEI 139
Query: 151 VEQLVHASRL-----SNIRNVVFMGMGEPLNNYAALVEAVRIMT-GLPFQVSPKRITVST 204
V Q++H +R+ +RNVV MGMGEPL+NY + AV ++ L + P+ IT+ST
Sbjct: 140 VGQILHVNRILRASGETLRNVVLMGMGEPLHNYEHTMSAVDVLVDALGLAMGPRFITLST 199
Query: 205 VGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQK 264
VG+V I + + ++LAVSLH R ++PA R +PL++LM+A + Y + +++
Sbjct: 200 VGVVPGIRRLADEERPIHLAVSLHGATDAERAALVPAGRRWPLDELMDACRYYSEKRKRR 259
Query: 265 IFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKI 324
IF E+ ++ G ND +HAH LG+LL VN+IP NP S + V +FQ +
Sbjct: 260 IFFEWTLISGRNDTAEHAHTLGQLLRGMDAHVNVIPLNPTVGYDGG-PSRPESVRAFQDV 318
Query: 325 LRGSYNIRTTVRKQMGQDISGACGQLVVNLPDKISAKSTP 364
L +Y++ +TVR++ G DI CGQL + ++ S +S P
Sbjct: 319 L-ATYDVPSTVRQRRGIDIDAGCGQLKATV-ERRSRRSLP 356
>sp|A9A3L9|RLMN_NITMS Ribosomal RNA large subunit methyltransferase N OS=Nitrosopumilus
maritimus (strain SCM1) GN=rlmN PE=3 SV=1
Length = 351
Score = 228 bits (580), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 132/355 (37%), Positives = 209/355 (58%), Gaps = 34/355 (9%)
Query: 13 IIRAEFEKAGIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTL---- 68
+I +++ Q +PL +K+ P + ++ P LP LR +F T+
Sbjct: 16 VIDMGYDRYRADQILLPLYYKF----PK-DINDIPQLPKK----LREEFTEAGYTIGSAK 66
Query: 69 --HSVVDSSDDVTTKLLVKLQNGGFVEAVIMRYD-SSLGKYNGKPRPGGPRSTLCISSQV 125
H VV S D TTKLL++L +G VE V+M+Y+ + +G G PRST+C+S+Q+
Sbjct: 67 EIHRVV-SDDGDTTKLLLELSDGSSVETVLMQYEPTKIG--------GHPRSTICVSTQI 117
Query: 126 GCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRL-----SNIRNVVFMGMGEPLNNYAA 180
GC MGC FCATG MGF++NL + IV Q++H + L ++ N+VFMGMGEP+ NY
Sbjct: 118 GCAMGCVFCATGQMGFETNLKAEHIVSQVIHFAELLEQRGEHVTNLVFMGMGEPMANYDE 177
Query: 181 LVEAVRIMT-GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIM 239
++ AV+I+T F + + IT+ST+GI I K + + LA+SLHAP ++R +++
Sbjct: 178 MIRAVKILTHDRGFGLGQRHITISTIGITSGIEKLAEENLQIGLAISLHAPNNELRKKLV 237
Query: 240 PAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLI 299
P A +E ++ + ++Y K + +++ EY +++GVND + AH+L +LL VN+I
Sbjct: 238 PTAGPNSVEDIIKSGRDYFKKTGRRVTFEYALMEGVNDSPEIAHELARLLRGNGSHVNII 297
Query: 300 PFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNL 354
P NP + F+ S+ V F++ILR S + TVR + G +IS ACGQL ++
Sbjct: 298 PINP--TAGDFKRPSEKNVLEFEQILRKS-GVNCTVRVEKGTEISAACGQLRTDI 349
>sp|Q6MDD0|RLMN2_PARUW Probable dual-specificity RNA methyltransferase RlmN 2
OS=Protochlamydia amoebophila (strain UWE25) GN=rlmN2
PE=3 SV=2
Length = 358
Score = 224 bits (572), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 124/351 (35%), Positives = 192/351 (54%), Gaps = 22/351 (6%)
Query: 9 FDGGIIRAEFEKAGIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTL 68
FD + + G K+ I ++ + WD+ +L + L + L
Sbjct: 6 FDHQKLVEWLKAHGEKEFHAKQILSWIYQKGVLSWDKMSNLSQSLREKLAKHIRLPVLEL 65
Query: 69 HSVVDSSDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCK 128
+S D T K L +L++G VE+V++ G R T+C+SSQVGC
Sbjct: 66 VRYTESIDQETIKFLWRLRDGNLVESVLIL--------------SGIRRTVCVSSQVGCP 111
Query: 129 MGCNFCATGTMGFKSNLSSGEIVEQLVH-----ASRLSNIRNVVFMGMGEPLNNYAALVE 183
C FCA+G GF NL EI+EQ++ +S+ + +VV+MGMGEPL NY ++V
Sbjct: 112 AKCAFCASGQQGFFRNLRPTEIIEQILQINAWLSSKGEKVSHVVYMGMGEPLKNYESVVA 171
Query: 184 AVRIMTGLPF-QVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAA 242
++R+++ F +S +RITVSTVG+V I + + +NL +SLHAP Q +R +I+P A
Sbjct: 172 SIRVLSHPDFCNISQRRITVSTVGVVEGIKRLSKEGLKVNLVLSLHAPNQHIRKKIIPYA 231
Query: 243 RAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFN 302
R +PLE+++ ++ EY + +++ I EY +L G+ND HAH+L LL+ Q VNLIP+N
Sbjct: 232 RKYPLEEILESMDEYAQKTKRDITFEYTLLAGINDHPDHAHELAHLLKGKQCTVNLIPYN 291
Query: 303 PIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVN 353
PI + + + + F+ +L GS+ I T R G DI ACGQL +
Sbjct: 292 PIPGL-RLKRPEKKAIKQFRSVLYGSH-IVNTCRYTKGDDIGAACGQLALQ 340
>sp|Q0VND7|RLMN_ALCBS Dual-specificity RNA methyltransferase RlmN OS=Alcanivorax
borkumensis (strain SK2 / ATCC 700651 / DSM 11573)
GN=rlmN PE=3 SV=1
Length = 381
Score = 219 bits (558), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 129/296 (43%), Positives = 172/296 (58%), Gaps = 30/296 (10%)
Query: 75 SDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFC 134
S D T K + ++ NGG VE V + P G R TLC+SSQVGC + C+FC
Sbjct: 77 SRDGTRKWVFEMDNGGAVETVFI--------------PDGRRGTLCVSSQVGCAVDCSFC 122
Query: 135 ATGTMGFKSNLSSGEIVEQLVHASRLSN---------IRNVVFMGMGEPLNNYAALVEAV 185
+TG GF+ +++S EI+ Q+ ASR I NVV MGMGEPL NY ++ A+
Sbjct: 123 STGKQGFQRDMTSAEIIGQVWQASRAFGPRRNLGQHPITNVVMMGMGEPLLNYDKVLTAM 182
Query: 186 RIMT-GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARA 244
RIM L + + KRITVST G++ +N+ DL ++LAVSLHAP ++R Q++P R
Sbjct: 183 RIMKDDLGYGIGKKRITVSTSGVIPKMNQLSEDL-DVSLAVSLHAPNDELRNQLVPLNRK 241
Query: 245 FPLEKLMNALKEYQKNSQQK---IFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPF 301
+PL+ LM A K Y KN + I +EY+ML VND+ +HA QL KLL V VNLIPF
Sbjct: 242 YPLKDLMAACKRYSKNITHRHNTITMEYVMLRDVNDKPEHARQLVKLLNGIPVKVNLIPF 301
Query: 302 NPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDK 357
NP R+ +D + F K L + + TTVR G DI ACGQLV + D+
Sbjct: 302 NPFPHAGYERSRKND-ILEFHKYLNDN-GVMTTVRTTRGDDIDAACGQLVGQVKDR 355
>sp|A1WXZ3|RLMN_HALHL Dual-specificity RNA methyltransferase RlmN OS=Halorhodospira
halophila (strain DSM 244 / SL1) GN=rlmN PE=3 SV=1
Length = 359
Score = 218 bits (554), Expect = 8e-56, Method: Compositional matrix adjust.
Identities = 140/357 (39%), Positives = 196/357 (54%), Gaps = 25/357 (7%)
Query: 16 AEFEKAGIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHSVVDSS 75
A F+ G K+ I +++ + ++DE L A LR + + + +S
Sbjct: 22 AFFDTLGEKRFRARQIMQWLHQRHVYDFDEMTDLSKALRQRLREHARVGLPEVAADQQAS 81
Query: 76 DDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCA 135
D T K +V+L +G VEAV + P P R TLCISSQ GC MGC FCA
Sbjct: 82 DG-TRKWVVRLADGNCVEAVYI------------PEP--KRGTLCISSQAGCPMGCTFCA 126
Query: 136 TGTMGFKSNLSSGEIVEQLVHASRL----SNIRNVVFMGMGEPLNNYAALVEAVRIMT-G 190
TG GF NL++ EIV Q VH +R I N+VFMGMGEPL N+ ++ A R+ T
Sbjct: 127 TGEGGFSRNLTAAEIVGQ-VHVARQHLPEGAITNIVFMGMGEPLLNFDPVISASRVFTDD 185
Query: 191 LPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKL 250
F +S +R+T+ST G+VHAI + + ++LAVSLHAP ++R Q++P R PLE+L
Sbjct: 186 YGFVLSKRRVTISTSGVVHAIERMQR-VTDVSLAVSLHAPNNELRNQLVPLNRKNPLERL 244
Query: 251 MNALKEY-QKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQ 309
+ A Y + ++I EY+MLDGVND+++HA +L + L VNLIPFNP
Sbjct: 245 LPACHAYIAEKPHRRITWEYVMLDGVNDQDEHARELLQRLRGIPSKVNLIPFNPYPGARY 304
Query: 310 FRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDKISAKSTPPV 366
RT D +V F L + + T+R+ G DI GACGQLV + D ++K P
Sbjct: 305 GRT-PDRQVRRFADRLL-EHGLTATIRETRGDDIDGACGQLVGEIRDARASKVARPA 359
>sp|B2A0B9|RLMN3_OPITP Probable dual-specificity RNA methyltransferase RlmN 3 OS=Opitutus
terrae (strain DSM 11246 / PB90-1) GN=rlmN3 PE=3 SV=1
Length = 374
Score = 215 bits (548), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 127/336 (37%), Positives = 188/336 (55%), Gaps = 28/336 (8%)
Query: 31 IWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHSVVDSSDDVTTKLLVKLQNGG 90
I +V + WD +LP + L F + +TL + S DVT KLL++L++G
Sbjct: 35 ILDWVYKKRARSWDGMTNLPKPLRTWLDDTFDLMPATL-VLNKQSADVTDKLLLELRDGS 93
Query: 91 FVEAVIMRY-DSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGE 149
+E VI+R +G+ + R T+CIS+QVGC MGC FCA+G G K +LS+GE
Sbjct: 94 LIETVIIRAPQEGVGQDHS-------RKTICISTQVGCAMGCVFCASGLAGLKRDLSAGE 146
Query: 150 IVEQLVHAS------------RLSNIRNVVFMGMGEPLNNYAALVEAVRIMT---GLPFQ 194
IV QL+ L++ N+V MGMGEPL NY AL+ A+ I+ GL F
Sbjct: 147 IVAQLLQVCYREDALTPRAHMELASFDNIVVMGMGEPLANYDALIRALTILNADWGLGF- 205
Query: 195 VSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNAL 254
+RITVST G+V I + + G LA+SLH +VR +IMP +AFPL KL+ A+
Sbjct: 206 -GARRITVSTSGLVPKILQLADEPLGFRLAISLHGATDEVREKIMPVNKAFPLAKLLPAV 264
Query: 255 KEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSS 314
K + + + I +E+I++DGVND + A +L + VNLIP+N + ++ ++ S
Sbjct: 265 KAFSEKHGRMITLEFILIDGVNDSLEQAEKLRDIALDLHAHVNLIPYNTVEGLA-WKRPS 323
Query: 315 DDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 350
+ F +LR + + T+R++ G DI ACGQL
Sbjct: 324 ITRQERFADVLR-ARRVSVTLRREKGHDIDAACGQL 358
>sp|Q7UHU7|RLMN_RHOBA Probable dual-specificity RNA methyltransferase RlmN
OS=Rhodopirellula baltica (strain SH1) GN=rlmN PE=3 SV=1
Length = 371
Score = 215 bits (547), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 125/343 (36%), Positives = 194/343 (56%), Gaps = 26/343 (7%)
Query: 18 FEKAGIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHSVVDSSDD 77
++ G K I +++ ++E LP+ + L F +T +VV S D
Sbjct: 40 LQEQGQKPFRAKQIRRWLFSGRATSFEEMTDLPAKLRAQLEEHFAIFNAT-EAVVSKSKD 98
Query: 78 VTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATG 137
T K+LV+L +GG VE V++R GPR ++C+SSQVGC MGC FCA+G
Sbjct: 99 GTEKILVRLADGGEVECVLLR--------------DGPRRSICVSSQVGCAMGCVFCASG 144
Query: 138 TMGFKSNLSSGEIVEQLVH-ASRL---SNIRNVVFMGMGEPLNNYAALVEAV---RIMTG 190
G NL+ GEI+EQ++ RL + ++V MGMGEPL N ++ A+ R G
Sbjct: 145 LDGVDRNLTGGEILEQMLRLQQRLPADERLSHIVMMGMGEPLANLPGVLSALDVARSEDG 204
Query: 191 LPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKL 250
L +SP+RIT+STVG+ AI+K + NLAVSLHAP ++R +++P R +E +
Sbjct: 205 L--GISPRRITISTVGLPPAIDKLAAAGIPYNLAVSLHAPNDELRSELVPVNRKIGIEPV 262
Query: 251 MNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQF 310
+ A Y S +++ EY++L G+ND ++HA QL ++L V++N+IP+NP+ + +
Sbjct: 263 LQAADRYFHASGRRLTFEYVLLGGINDGDEHARQLSQILRGRSVMMNVIPYNPVAGLP-Y 321
Query: 311 RTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVN 353
RT S ++ F+ IL S + R++ G +I+ ACGQL N
Sbjct: 322 RTPSGAAIARFRAILE-SAGVNVNFRQRKGDEINAACGQLRRN 363
>sp|Q1MQJ3|RLMN_LAWIP Dual-specificity RNA methyltransferase RlmN OS=Lawsonia
intracellularis (strain PHE/MN1-00) GN=rlmN PE=3 SV=1
Length = 358
Score = 214 bits (545), Expect = 9e-55, Method: Compositional matrix adjust.
Identities = 133/332 (40%), Positives = 189/332 (56%), Gaps = 28/332 (8%)
Query: 31 IWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHSVVDSSDDVTTKLLVKLQNGG 90
IW++V + + + +LP + L + K + ++ SSD T K L++L +G
Sbjct: 30 IWQWVWQKQITDIESMTNLPQKIRASLTALIKINLPEIVTIQQSSDG-TKKFLLRLSDGA 88
Query: 91 FVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEI 150
+E V++ S+ K G R T C+SSQVGC MGC FC+T TMGF NL++GEI
Sbjct: 89 LIETVLI---PSIDK------AGNIRITQCLSSQVGCSMGCTFCSTATMGFIRNLTAGEI 139
Query: 151 VEQLVHASRLSN--------IRNVVFMGMGEPLNNYAALVEAVRIM---TGLPFQVSPKR 199
V Q++ A N IRN+VFMGMGEPL N L A+ I+ GL F S +R
Sbjct: 140 VSQVLLAKLHLNDNKPDKPIIRNIVFMGMGEPLLNLTELTRALHILHSEKGLNF--SARR 197
Query: 200 ITVSTVGIVHAINKFHSDLPGLN-LAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQ 258
ITVST GI I + GL LA+SLHA Q++R IMP A + L++L++ LK Y
Sbjct: 198 ITVSTCGIKKGIQALSEN--GLAFLALSLHASNQELRSTIMPKAAKWDLKELIDTLKNYS 255
Query: 259 KNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKV 318
++KI EY++L G+ND +HA +L KL+ + +NLIP+NP + +++ +
Sbjct: 256 LKKREKITFEYLLLGGINDSPEHAKELAKLITDIKGKLNLIPYNP-AQGQPYLKPTEENI 314
Query: 319 SSFQKILRGSYNIRTTVRKQMGQDISGACGQL 350
FQK+L S I T +RK GQDI+ ACGQL
Sbjct: 315 LKFQKVL-WSKGIVTILRKSKGQDINAACGQL 345
>sp|A1A1I4|RLMN_BIFAA Probable dual-specificity RNA methyltransferase RlmN
OS=Bifidobacterium adolescentis (strain ATCC 15703 / DSM
20083 / NCTC 11814 / E194a) GN=rlmN PE=3 SV=1
Length = 386
Score = 214 bits (544), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 127/331 (38%), Positives = 185/331 (55%), Gaps = 36/331 (10%)
Query: 44 DEFPSLPSAAYSLLRSKFKPLTSTLHSVVDSSDD--VTTKLLVKLQNGGFVEAVIMRYDS 101
+EF P+A S F P +H V D T K L +L +G +E+V+MRY +
Sbjct: 74 EEFSDFPAARRSDAAEAFFP--ELIHEVTRQVADGGTTIKTLWRLFDGSLIESVLMRYPT 131
Query: 102 SLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRL- 160
R+TLCISSQVGC MGC FCATG +G N+S+GEIVEQ+ A++
Sbjct: 132 --------------RTTLCISSQVGCGMGCPFCATGQLGLTRNMSAGEIVEQVRVAAKAM 177
Query: 161 ---------SNIRNVVFMGMGEPLNNYAALVEAVRIMTGLP---FQVSPKRITVSTVGIV 208
+ N+VFMGMGEP+ NY +++ AVR ++ +P F +S + ITVSTVG+V
Sbjct: 178 RDGEVAGGSGRLSNIVFMGMGEPMGNYKSVLSAVRQISSMPPEGFGISARNITVSTVGVV 237
Query: 209 HAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIE 268
I K + + LAVSLHAP ++R +++P + F +++++A +Y S++++ IE
Sbjct: 238 PGIRKLAEEGIPVRLAVSLHAPSDELRDELVPMNKRFNTKQVLDAAHDYYLASKRRVSIE 297
Query: 269 YIMLDGVNDEEQHAHQLGKLLETF---QVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKIL 325
Y ++ G+ND+ +HA L K L + VN IP NPI S++ S + F +IL
Sbjct: 298 YALMRGINDQAEHAKLLAKRLNHYGDDWAHVNPIPLNPI-EGSKWTASKPEDERRFLEIL 356
Query: 326 RGSYNIRTTVRKQMGQDISGACGQLVVNLPD 356
+ I T+R GQDI GACGQL D
Sbjct: 357 HNA-GITATLRDTRGQDIDGACGQLAAKERD 386
>sp|B9K7Z6|RLMN_THENN Probable dual-specificity RNA methyltransferase RlmN OS=Thermotoga
neapolitana (strain ATCC 49049 / DSM 4359 / NS-E)
GN=rlmN PE=3 SV=1
Length = 343
Score = 211 bits (538), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 128/349 (36%), Positives = 200/349 (57%), Gaps = 24/349 (6%)
Query: 16 AEFEKAGIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKFK-PLTSTLHSVVDS 74
+E G++++ I +V + +DE +L +LL+ F P L V S
Sbjct: 14 SEITSLGLERYRADQILDWVFDKKVNNFDEMTNLSKQHRALLKEHFTIPFLKLLEKRV-S 72
Query: 75 SDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFC 134
D TTK L +L++G +E+V++ + PG R T CIS+QVGC +GC FC
Sbjct: 73 KIDGTTKFLWELEDGNTIESVMIFH------------PG--RITACISTQVGCPVGCTFC 118
Query: 135 ATGTMGFKSNLSSGEIVEQLVHASRLS--NIRNVVFMGMGEPLNNYAALVEAVRIMTGLP 192
ATG GF NL++GEIV Q++ + I NVV+MGMGEPL NY ++++RI+
Sbjct: 119 ATGMSGFVRNLTTGEIVSQILSMEKEEGKKIGNVVYMGMGEPLLNYENTIKSIRILNHKK 178
Query: 193 F-QVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLM 251
+ +RIT+STVGI I + + + LA+SLHAP R Q++P R + +E+++
Sbjct: 179 MGNIGIRRITISTVGIPEKIIQLADEGLDVKLALSLHAPTNFKRDQLVPLNRKYSVEEIL 238
Query: 252 NALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFR 311
NA+K YQ + +++ IEY+++ GVNDE A +L ++L+ +V VNLIP NP +V+
Sbjct: 239 NAIKVYQMKTGKRVTIEYVLIRGVNDEISDAKKLAEILKGLKVFVNLIPVNP--TVAGLS 296
Query: 312 TSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDKISA 360
S ++ +F++IL + I +R++ G DI ACGQL L K+S+
Sbjct: 297 KPSRQRILAFKRILLEN-GIEAEIRQEKGSDIEAACGQL--RLKRKVSS 342
>sp|A7HNQ1|RLMN_FERNB Probable dual-specificity RNA methyltransferase RlmN
OS=Fervidobacterium nodosum (strain ATCC 35602 / DSM
5306 / Rt17-B1) GN=rlmN PE=3 SV=1
Length = 348
Score = 211 bits (536), Expect = 9e-54, Method: Compositional matrix adjust.
Identities = 122/355 (34%), Positives = 194/355 (54%), Gaps = 26/355 (7%)
Query: 1 MTYDYRSVFDGGIIRAEFEKAGIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSK 60
+ + Y + D EF K G+++ + +W ++ + ++D+ +L + L +
Sbjct: 6 LDFSYEELVD------EFSKIGLEKFRVDQVWDWIYKKHEFDFDKMTNLSKEHRNTLSER 59
Query: 61 FKPLTSTLHSVVDSSDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLC 120
F L + S D TTK L KL++ +E+V++ + R T C
Sbjct: 60 FYIYVPELLDMQISQIDKTTKFLWKLEDDNTIESVLLFHPD--------------RVTAC 105
Query: 121 ISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLV--HASRLSNIRNVVFMGMGEPLNNY 178
IS+QVGC C FCATG GF NLS+GEIV Q++ R NI N+V+MGMGEPL NY
Sbjct: 106 ISTQVGCPAKCAFCATGQSGFVRNLSAGEIVSQIIAMEKHRKVNIGNIVYMGMGEPLLNY 165
Query: 179 AALVEAVRIMTGLPFQ-VSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQ 237
+V++V+++ + +S +RI++STVGI I + DLP + LA+SLHAP R
Sbjct: 166 KEVVKSVKMLNHKKGKNISMRRISISTVGIPEKIVELAQDLPEVKLAISLHAPNNYKRDI 225
Query: 238 IMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVN 297
I+P + + +E+++ + KEYQK ++ ++ EYI++ ND A +L +LL+ VN
Sbjct: 226 IVPMNKKYSVEEIIQSAKEYQKITKNRVTFEYILIREFNDFVDDAEKLAELLKGMGAYVN 285
Query: 298 LIPFNPIGSVSQ--FRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 350
LIP NP+ S + F + F+++L +NI +R++ G DI ACGQL
Sbjct: 286 LIPVNPVPSSGELKFERPHHWAIERFKEVL-DKHNIENEIRREKGTDIDAACGQL 339
>sp|A1WE19|RLMN_VEREI Dual-specificity RNA methyltransferase RlmN OS=Verminephrobacter
eiseniae (strain EF01-2) GN=rlmN PE=3 SV=1
Length = 391
Score = 211 bits (536), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 139/359 (38%), Positives = 197/359 (54%), Gaps = 38/359 (10%)
Query: 16 AEF-EKAGIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHSVV-- 72
A+F + G K+ +++++ + ++D L A LR K K V
Sbjct: 15 ADFCARLGEKRFRATQLFRWIHQRGASDFDAMSDLARA----LRDKLKGCARVQAPPVIS 70
Query: 73 -DSSDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGC 131
+S D + K L + G VEAV + P R TLC+SSQ GC +GC
Sbjct: 71 GQASADGSVKWLFDVGAGNAVEAVFI--------------PEDERGTLCVSSQAGCAVGC 116
Query: 132 NFCATGTMGFKSNLSSGEIVEQLVHAS-----RLSN----IRNVVFMGMGEPLNNYAALV 182
FC+TG GF NLSSGEI+ QL A RL I N+V MGMGEPL N AAL+
Sbjct: 117 RFCSTGHQGFSRNLSSGEIIAQLWFAEHALRRRLKTEDRVISNLVMMGMGEPLQNLAALL 176
Query: 183 EAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPA 241
A+R+M + +S +R+TVST G+V I++ D P + LAVSLHAP +R Q++P
Sbjct: 177 PALRVMLDDHGYGLSRRRVTVSTSGVVPMIDRLARDCP-VALAVSLHAPNDALRDQLVPL 235
Query: 242 ARAFPLEKLMNALKEYQKNSQQK-IFIEYIMLDGVNDEEQHAHQLGKLL--ETFQVVVNL 298
R +P+++L+ A K Y ++ + I EY MLDGVND+ HA QL +L+ + NL
Sbjct: 236 NRKYPIDELLQACKRYLAHAPRDFITFEYCMLDGVNDQIGHARQLVELVGRAAIRCKFNL 295
Query: 299 IPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDK 357
IPFNP + R S+ D++ +F ++L G+ I TTVRK G DI+ ACGQL ++ D+
Sbjct: 296 IPFNPFPASGLLR-SAHDQILAFAQVL-GAAGIVTTVRKTRGDDIAAACGQLAGDVRDR 352
>sp|Q8G481|RLMN_BIFLO Probable dual-specificity RNA methyltransferase RlmN
OS=Bifidobacterium longum (strain NCC 2705) GN=rlmN PE=3
SV=1
Length = 389
Score = 210 bits (534), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 125/326 (38%), Positives = 186/326 (57%), Gaps = 36/326 (11%)
Query: 45 EFPSLPSAAYSLLRSKFKP--LTSTLHSVVDSSDDVTTKLLVKLQNGGFVEAVIMRYDSS 102
EF P+A S + F P +T V D + T K L KL +G +E+V+MRY +
Sbjct: 79 EFTDFPAAKRSEAAAAFFPQLITEVTRQVAD--EGTTIKTLWKLFDGSLIESVLMRYPT- 135
Query: 103 LGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRL-- 160
R+TLCISSQVGC M C FCATG +G N+S+GEI+EQ+ A+++
Sbjct: 136 -------------RTTLCISSQVGCGMDCPFCATGKLGLTRNMSTGEIIEQVRVAAKMMR 182
Query: 161 --------SNIRNVVFMGMGEPLNNYAALVEAVRIMTGLP---FQVSPKRITVSTVGIVH 209
+ N+VFMGMGEP+ NY +++ AVR ++ +P F +S + ITVSTVG+V
Sbjct: 183 DGEVAGGEGRLSNIVFMGMGEPMGNYNSVLSAVRQISAMPPEGFGISARNITVSTVGVVP 242
Query: 210 AINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEY 269
I K ++ + LAVSLHAP ++R +++P + F +++++A +Y S++++ IEY
Sbjct: 243 GIKKLTAEGIPVRLAVSLHAPSDELRDELVPMNKRFNTKQVLDAAHDYWLASKRRVSIEY 302
Query: 270 IMLDGVNDEEQHAHQLGKLLETF---QVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILR 326
++ G+ND+ +HA L K L + VN IP NPI S++ S + F +IL
Sbjct: 303 ALMRGINDQAEHAQLLAKRLNHYGDNWAHVNPIPLNPIEG-SKWTASKPEDEQRFLEILH 361
Query: 327 GSYNIRTTVRKQMGQDISGACGQLVV 352
+ I T+R GQDI GACGQL
Sbjct: 362 RA-GITATLRDTRGQDIDGACGQLAA 386
>sp|Q2J713|RLMN_FRASC Probable dual-specificity RNA methyltransferase RlmN OS=Frankia sp.
(strain CcI3) GN=rlmN PE=3 SV=1
Length = 421
Score = 209 bits (533), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 119/291 (40%), Positives = 169/291 (58%), Gaps = 29/291 (9%)
Query: 76 DDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCA 135
D +T K + +G +E+VIMRY R+T+C+SSQ GC MGC FCA
Sbjct: 110 DGLTRKTAWRTVDGASLESVIMRYPD--------------RATVCVSSQAGCGMGCPFCA 155
Query: 136 TGTMGFKSNLSSGEIVEQLVHASRL----------SNIRNVVFMGMGEPLNNYAALVEAV 185
TG G NLS+ EIVEQ+VHA+R+ + + NVVFMGMGEPL NYAA++ A+
Sbjct: 156 TGQGGLTRNLSTAEIVEQVVHAARVLRRRELAGGETRLSNVVFMGMGEPLANYAAVIAAL 215
Query: 186 RIMTGLP---FQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAA 242
R +T P +S + +TVSTVG+V AI + + + LAVSLHAP +R +++P
Sbjct: 216 RRLTAHPPEGLGLSARGLTVSTVGLVPAIRRLAGEGLPVTLAVSLHAPDDVLRNELVPIN 275
Query: 243 RAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFN 302
+P+ +++ A EY + + +++ +EY ++DGVND+ A L LL VNLIP N
Sbjct: 276 TRWPVVEVLAAAWEYAEVTGRRVSVEYALIDGVNDDVGRADALADLLVGRLAHVNLIPLN 335
Query: 303 PIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVN 353
P G S +R S+ +F + LR I TTVR G++I+ ACGQL
Sbjct: 336 PTGG-SSWRASAPAGQRAFVRRLR-DRGIVTTVRDTRGREIAAACGQLAAE 384
>sp|Q67PQ7|RLMN_SYMTH Probable dual-specificity RNA methyltransferase RlmN
OS=Symbiobacterium thermophilum (strain T / IAM 14863)
GN=rlmN PE=3 SV=1
Length = 371
Score = 209 bits (532), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 114/279 (40%), Positives = 172/279 (61%), Gaps = 24/279 (8%)
Query: 79 TTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGT 138
TTK L +L +G VE+V+MR S G +++C+++QVGC+MGC FCA+
Sbjct: 99 TTKYLFRLADGSQVESVLMR--QSWG------------NSVCVTTQVGCRMGCTFCASTV 144
Query: 139 MGFKSNLSSGEIVEQLVHASRL----SNIRNVVFMGMGEPLNNYAALVEAVRIM---TGL 191
G NL++GEIV+Q+V R I VV MG GEPL NY +++AVR++ GL
Sbjct: 145 GGLVRNLTAGEIVDQIVMMQRELPQGERISTVVLMGSGEPLENYDHVLKAVRLVHDPEGL 204
Query: 192 PFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLM 251
+ + IT+ST GIV + + + + LA+SLHAP ++R Q+MP AR +PL +++
Sbjct: 205 --NIGYRHITISTSGIVPGMRRLAEEGLPITLALSLHAPTDELRRQLMPVARIWPLAEVL 262
Query: 252 NALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFR 311
A +EY + + +++ EYI+++GVND + A QL +LL+ VNLIP NP+ Q+R
Sbjct: 263 AAAREYGEKTGRRVTYEYILIEGVNDGPEEARQLARLLKGALAHVNLIPMNPVAERPQYR 322
Query: 312 TSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 350
++V+ F++IL S I TTVR++MG +I ACGQL
Sbjct: 323 RPGPERVNRFKEILE-SNGIATTVRREMGGEIDAACGQL 360
>sp|A2SHB8|RLMN_METPP Dual-specificity RNA methyltransferase RlmN OS=Methylibium
petroleiphilum (strain PM1) GN=rlmN PE=3 SV=1
Length = 394
Score = 209 bits (532), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 140/373 (37%), Positives = 198/373 (53%), Gaps = 39/373 (10%)
Query: 9 FDGGIIRAEFEKAGIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLL--RSKFKPLTS 66
FD + A E+ G K+ +++++ + ++ + L + L R+ +PL
Sbjct: 9 FDLDALAAFCEQLGEKRFRATQLFRWIHQKGQSDFAQMSDLAKSLREKLAGRAVVRPLAV 68
Query: 67 TLHSVVDSSDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVG 126
V S D T K L + G VE V + P R TLCISSQ G
Sbjct: 69 LSEHV---SADGTVKWLFDVGGGNAVETVFI--------------PENDRGTLCISSQAG 111
Query: 127 CKMGCNFCATGTMGFKSNLSSGEIVEQLVHA-----SRLSN----IRNVVFMGMGEPLNN 177
C +GC FC+TG GF NLS+GEIV QL HA +RL I NVV MGMGEPL N
Sbjct: 112 CAVGCRFCSTGHQGFSRNLSTGEIVAQLWHAEHQLRARLGTTERVISNVVMMGMGEPLQN 171
Query: 178 YAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRC 236
YAAL+ A+R+M + +S +R+TVST G+V I++ D P + LAVSLHAP +R
Sbjct: 172 YAALLPALRVMLDDHGYGLSRRRVTVSTSGVVPMIDRLREDCP-VALAVSLHAPTDALRD 230
Query: 237 QIMPAARAFPLEKLMNALKEYQKNSQQK-IFIEYIMLDGVNDEEQHAHQLGKLLETFQVV 295
++P R +P+ +L+ A + Y + + + I EY MLDGVND E A +L +L+ V
Sbjct: 231 DLVPLNRKYPIAELLEACQRYLEAAPRDFITFEYCMLDGVNDSEAQARELLRLVGERGPV 290
Query: 296 ------VNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQ 349
+NLIPFNP S SS +V +F ++L + TTVR+ G DI ACGQ
Sbjct: 291 GRVPCKINLIPFNPF-PASGLTRSSVARVQAFAQLLVDG-GLVTTVRRTRGDDIDAACGQ 348
Query: 350 LVVNLPDKISAKS 362
L + D+ +A++
Sbjct: 349 LAGEVQDRTNAQA 361
>sp|Q8RFZ9|RLMN_FUSNN Probable dual-specificity RNA methyltransferase RlmN
OS=Fusobacterium nucleatum subsp. nucleatum (strain ATCC
25586 / CIP 101130 / JCM 8532 / LMG 13131) GN=rlmN PE=3
SV=1
Length = 358
Score = 209 bits (532), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 123/336 (36%), Positives = 187/336 (55%), Gaps = 17/336 (5%)
Query: 22 GIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSK-FKPLTSTLHSVVDSSDDVTT 80
G+K+ + ++ ++ + +DE +L +L+ K + P + L V S D T
Sbjct: 24 GLKKFYGKEVFIWLHKKITRSFDEMTNLSLKDREILKEKTYIPFFNLLKYQV-SKIDKTE 82
Query: 81 KLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMG 140
K L +L++GG +E V++R+ S K R+TLC+SSQVGC + C+FCATG G
Sbjct: 83 KFLFELEDGGTIETVLLRHKDSKNK--------EIRNTLCVSSQVGCPVKCSFCATGQSG 134
Query: 141 FKSNLSSGEIVEQLVHASRL-----SNIRNVVFMGMGEPLNNYAALVEAVRIMTGLP-FQ 194
+ NLS EI+ Q+ R N+ N+VFMGMGEPL N L +A+ I++
Sbjct: 135 YMRNLSVSEILNQIYTVERRLRKKGENLNNLVFMGMGEPLLNIDNLSKALSIISNENGIN 194
Query: 195 VSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNAL 254
+S ++IT+ST G+V I K D + LA+SLH+ + + R +I+P + FPLE L L
Sbjct: 195 ISKRKITISTSGVVSGIEKILLDKIPIELAISLHSAINEKRDKIIPINKNFPLEDLSAVL 254
Query: 255 KEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSS 314
EYQK ++++I EYI++D N E A+ L + F VVNLIP+N + R S
Sbjct: 255 IEYQKQTKRRITFEYILIDNFNISETDANALADFIHQFDHVVNLIPYNEVEGAEHTRPSV 314
Query: 315 DDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 350
K++ F L+ + T+R++ G DI GACGQL
Sbjct: 315 -KKINKFYIYLKNVRKVNVTLRQEKGSDIDGACGQL 349
>sp|Q47BR3|RLMN_DECAR Dual-specificity RNA methyltransferase RlmN OS=Dechloromonas
aromatica (strain RCB) GN=rlmN PE=3 SV=1
Length = 364
Score = 208 bits (530), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 137/362 (37%), Positives = 189/362 (52%), Gaps = 34/362 (9%)
Query: 9 FDGGIIRAEFEKAGIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTL 68
FDG + A F + G K + +++ + ++D + + LR K K
Sbjct: 8 FDGESLTAWFAEQGEKPFRAKQVLRWIHRSGVADFDAMTDIAKS----LREKLKAKAVVA 63
Query: 69 HSVVDS---SDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQV 125
V S SDD T K L+ + NG VE V + P R TLCIS+Q
Sbjct: 64 PPAVVSDKLSDDGTRKFLIDVGNGNAVETVFI--------------PEDDRGTLCISTQA 109
Query: 126 GCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN--------IRNVVFMGMGEPLNN 177
GC + C FC+TG GF NLS EI+ QL A+ I NVV MGMGEPL N
Sbjct: 110 GCALDCAFCSTGKQGFNRNLSVAEIIGQLWQANHALGAVHGDERVISNVVLMGMGEPLAN 169
Query: 178 YAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRC 236
+ V A+++M + +S +RITVST G+V +++ + P + LAVSLHAP +R
Sbjct: 170 FENSVAALKLMLDDNAYGLSRRRITVSTSGLVPVMDRLGDECP-VALAVSLHAPNDKLRD 228
Query: 237 QIMPAARAFPLEKLMNALKEY-QKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVV 295
Q++P + +PL++LM A + Y +K + I EYIMLDG+ND + HA +L L+++
Sbjct: 229 QLVPINQKYPLKELMAACQRYLEKAPRDFITFEYIMLDGINDTDAHARELLALVKSVHCK 288
Query: 296 VNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLP 355
NLIPFNP S FR S ++V F IL + I TT RK G DI ACGQL +
Sbjct: 289 FNLIPFNPFPG-SPFRRSPAERVRHFADILMQA-GIVTTTRKTRGDDIDAACGQLAGQVQ 346
Query: 356 DK 357
DK
Sbjct: 347 DK 348
>sp|Q727F1|RLMN_DESVH Dual-specificity RNA methyltransferase RlmN OS=Desulfovibrio
vulgaris (strain Hildenborough / ATCC 29579 / NCIMB
8303) GN=rlmN PE=3 SV=1
Length = 364
Score = 207 bits (527), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 128/332 (38%), Positives = 191/332 (57%), Gaps = 28/332 (8%)
Query: 31 IWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHSVVDSSDDVTTKLLVKLQNGG 90
+W+++ + +DE ++ A + L K +T V S D TTK L++L +G
Sbjct: 30 VWQWLWQKCARSFDEMTNVSKATRARLAEK-AVITWPEVETVQKSADGTTKFLLRLADGA 88
Query: 91 FVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEI 150
VE V++ S R G R T C+S QVGC MGC FC+TGTMGF+ N++ GEI
Sbjct: 89 LVETVLIPSAS---------REGTLRITQCLSCQVGCAMGCTFCSTGTMGFERNMTMGEI 139
Query: 151 VEQ-LVHASRLSN-------IRNVVFMGMGEPLNNYAALVEAVRIMT---GLPFQVSPKR 199
+ Q LV + L + +RN+VFMGMGEPL N ++ ++R + GL F SP+R
Sbjct: 140 LGQVLVARAHLGDSRPDHPILRNLVFMGMGEPLLNLNEVMRSLRTLNDEFGLSF--SPRR 197
Query: 200 ITVSTVGIVHAINKFHSDLPGLN-LAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQ 258
ITVST GI + + GL LAVSLHAP Q++R +IMP A + L+ L+ AL+ Y
Sbjct: 198 ITVSTCGIEKGLRELGES--GLAFLAVSLHAPNQEIRKRIMPKAAHWHLDDLITALESYP 255
Query: 259 KNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKV 318
+++++ EY++L GVND +HA +L +L+ + +NLI +NP + + +++
Sbjct: 256 LKTRERVTFEYLLLGGVNDGIEHARELVRLVSRTKGKLNLIVYNP-AEGDPYDAPTPERI 314
Query: 319 SSFQKILRGSYNIRTTVRKQMGQDISGACGQL 350
+F++ L S NI +RK GQDI ACGQL
Sbjct: 315 LAFEQYL-WSKNITAIIRKSKGQDIKAACGQL 345
>sp|A1VAL8|RLMN_DESVV Dual-specificity RNA methyltransferase RlmN OS=Desulfovibrio
vulgaris subsp. vulgaris (strain DP4) GN=rlmN PE=3 SV=1
Length = 364
Score = 207 bits (526), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 128/332 (38%), Positives = 191/332 (57%), Gaps = 28/332 (8%)
Query: 31 IWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHSVVDSSDDVTTKLLVKLQNGG 90
+W+++ + +DE ++ A + L K +T V S D TTK L++L +G
Sbjct: 30 VWQWLWQKCARSFDEMTNVSKATRARLAEK-AVITWPEVETVQKSADGTTKFLLRLADGA 88
Query: 91 FVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEI 150
VE V++ S R G R T C+S QVGC MGC FC+TGTMGF+ N++ GEI
Sbjct: 89 LVETVLIPSAS---------REGTLRITQCLSCQVGCAMGCTFCSTGTMGFERNMTMGEI 139
Query: 151 VEQ-LVHASRLSN-------IRNVVFMGMGEPLNNYAALVEAVRIMT---GLPFQVSPKR 199
+ Q LV + L + +RN+VFMGMGEPL N ++ ++R + GL F SP+R
Sbjct: 140 LGQVLVARAHLGDSRPDHPILRNLVFMGMGEPLLNLNEVMRSLRTLNDEFGLSF--SPRR 197
Query: 200 ITVSTVGIVHAINKFHSDLPGLN-LAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQ 258
ITVST GI + + GL LAVSLHAP Q++R +IMP A + L+ L+ AL+ Y
Sbjct: 198 ITVSTCGIEKGLRELGES--GLAFLAVSLHAPNQEIRKRIMPKAAHWHLDDLITALESYP 255
Query: 259 KNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKV 318
+++++ EY++L GVND +HA +L +L+ + +NLI +NP + + +++
Sbjct: 256 LKTRERVTFEYLLLGGVNDGIEHARELVRLVSRTKGKLNLIVYNP-AEGDPYDAPTPERI 314
Query: 319 SSFQKILRGSYNIRTTVRKQMGQDISGACGQL 350
+F++ L S NI +RK GQDI ACGQL
Sbjct: 315 LAFEQYL-WSKNITAIIRKSKGQDIKAACGQL 345
>sp|A8F8C2|RLMN_THELT Probable dual-specificity RNA methyltransferase RlmN OS=Thermotoga
lettingae (strain ATCC BAA-301 / DSM 14385 / TMO)
GN=rlmN PE=3 SV=1
Length = 343
Score = 206 bits (525), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 119/339 (35%), Positives = 195/339 (57%), Gaps = 20/339 (5%)
Query: 17 EFEKAGIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHSVVDSSD 76
+ ++ G++++ I ++ + +++ +L SLLR F + S SS
Sbjct: 14 KIQELGLEKYRADQILDWIYKKHVFVFEQMTNLSKQHRSLLRENFCIQIPKIVSKRVSSI 73
Query: 77 DVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCAT 136
D TTK L +L +G +E+V++ ++ +T CIS+Q+GC + C+FCAT
Sbjct: 74 DKTTKYLYELSDGNTIESVLLFHEGY--------------ATACISTQIGCPVKCSFCAT 119
Query: 137 GTMGFKSNLSSGEIVEQLVHASRLSN--IRNVVFMGMGEPLNNYAALVEAVRIMTGLPFQ 194
G GF NL +GEIV Q++ + S +RN+V+MGMGEPL NY ++++++I+ +
Sbjct: 120 GQSGFVRNLDAGEIVSQILAIEKDSKQTVRNIVYMGMGEPLLNYDNVIKSIKILIDKKTK 179
Query: 195 -VSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNA 253
+ +R+T+STVGI I K + LNLA+SLHA + R QI+P R + +++++NA
Sbjct: 180 NIGIRRVTLSTVGIPEMILKLSEERLDLNLAISLHASTNEKRDQIIPINRKYSIQEIINA 239
Query: 254 LKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTS 313
K YQ+ S +++ IEYI++ ND ++ A +L KLL +V VNLIP N + S F
Sbjct: 240 AKNYQERSDRRLTIEYILIKEFNDFDEDARKLAKLLNGLKVFVNLIPVN--STFSNFEKP 297
Query: 314 SDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVV 352
+ K++ F++IL S I +R + G DI ACGQL +
Sbjct: 298 AKWKINRFKEILINS-GIEAEIRYEKGADIEAACGQLRI 335
>sp|B8DRU2|RLMN_DESVM Dual-specificity RNA methyltransferase RlmN OS=Desulfovibrio
vulgaris (strain Miyazaki F / DSM 19637) GN=rlmN PE=3
SV=1
Length = 367
Score = 206 bits (524), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 126/332 (37%), Positives = 187/332 (56%), Gaps = 28/332 (8%)
Query: 31 IWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHSVVDSSDDVTTKLLVKLQNGG 90
+W+++ + +D ++ A + L + + +V SSD T K L+ L +G
Sbjct: 30 VWQWLWQKNARSFDAMTNVSKATRARLAEAARITWPEVRTVKTSSDG-TVKFLLALADGA 88
Query: 91 FVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEI 150
VE V++ +S R G R T C+S QVGC MGC FC+TG+MGF+ N++ EI
Sbjct: 89 LVETVLIPSES---------REGKVRMTQCLSCQVGCAMGCTFCSTGSMGFERNMTMAEI 139
Query: 151 VEQ-LVHASRLSN-------IRNVVFMGMGEPLNNYAALVEAVRIMT---GLPFQVSPKR 199
+ Q LV L + +RN+VFMGMGEPL N ++ ++R + GL F SP+R
Sbjct: 140 LGQVLVAREHLGDDRPDHPIVRNLVFMGMGEPLLNLNEVMRSLRTLNDEFGLCF--SPRR 197
Query: 200 ITVSTVGIVHAINKFHSDLPGLN-LAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQ 258
ITVST GI + + GL LAVSLHAP Q+VR +IMP A + L+ LM AL+ Y
Sbjct: 198 ITVSTCGIEKGLRELGES--GLAFLAVSLHAPNQEVRARIMPRAARWTLDDLMAALESYP 255
Query: 259 KNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKV 318
++++I EY++L GVND HA +L +L+ + +NLI +NP + + S ++
Sbjct: 256 LKTRERITFEYLLLGGVNDSIDHARELVRLVSRTKAKLNLIVYNPAEGLP-YEAPSQARI 314
Query: 319 SSFQKILRGSYNIRTTVRKQMGQDISGACGQL 350
+F++ L S N+ +RK GQDI ACGQL
Sbjct: 315 LAFEQYL-WSKNVTAIIRKSKGQDIKAACGQL 345
>sp|Q2RK16|RLMN_MOOTA Probable dual-specificity RNA methyltransferase RlmN OS=Moorella
thermoacetica (strain ATCC 39073) GN=rlmN PE=3 SV=1
Length = 354
Score = 206 bits (524), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 116/296 (39%), Positives = 170/296 (57%), Gaps = 22/296 (7%)
Query: 63 PLTSTLHSVVDSSDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCIS 122
P L+ +V ++D +T KLL+ L +G +E V+M Y + G R+T C+S
Sbjct: 65 PPVRVLNRLV-AADGLTRKLLLGLGDGNSIECVLMIY-----------KDGRRRNTACLS 112
Query: 123 SQVGCKMGCNFCATGTMGFKSNLSSGEIVEQ-------LVHASRLSNIRNVVFMGMGEPL 175
SQVGC MGC+FCATG G + NL++ EI+ Q L + I N+VFMGMGEPL
Sbjct: 113 SQVGCAMGCSFCATGQGGLQRNLTASEIILQALALGAELAEGEGGNRISNIVFMGMGEPL 172
Query: 176 NNYAALVEAVRIMTGLP-FQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDV 234
NNY A+++ VRI + +S +RIT+ST GIV I + + P L LAVSLHA ++
Sbjct: 173 NNYEAVMKGVRIFEDPSGWGISHRRITLSTCGIVPGIERLAREKPPLELAVSLHAVTNEL 232
Query: 235 RCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQV 294
R ++MP R +PLE+L+ A + Y + + +++ EY ++ GVND + A L +LL
Sbjct: 233 RDKLMPINRRYPLEELIPACRRYAEITGRRVTFEYALIAGVNDRREDARGLSRLLRDMLA 292
Query: 295 VVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 350
VN+IP NP+ S F+ +F +L+ + +R GQDI+ ACGQL
Sbjct: 293 FVNIIPLNPVAG-SGFKGVPPAAARAFVALLQ-EAGLEAAIRDSRGQDIAAACGQL 346
>sp|B2UNF2|RLMN_AKKM8 Probable dual-specificity RNA methyltransferase RlmN OS=Akkermansia
muciniphila (strain ATCC BAA-835) GN=rlmN PE=3 SV=1
Length = 359
Score = 206 bits (524), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 118/342 (34%), Positives = 193/342 (56%), Gaps = 16/342 (4%)
Query: 25 QHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHSVVDSSDDVTTKLLV 84
Q + +W+ + +D +LP A +LL F+ T + + S D T K L
Sbjct: 30 QQVLDWVWRKRVTT----FDAMSNLPPALKNLLAENFRFHTPEIVEI-HGSADTTRKFLT 84
Query: 85 KLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSN 144
K+++G VE+VI+ + NG+ R TLC+SSQVGC GC FCA+G +G K +
Sbjct: 85 KMEDGSLVESVII---PAAAAENGEK---SERVTLCVSSQVGCAFGCKFCASGLLGLKRH 138
Query: 145 LSSGEIVEQLVHASRLSNIR--NVVFMGMGEPLNNYAALVEAVRIMTG-LPFQVSPKRIT 201
L++GEI+ Q++ A ++ R N+VFMGMGEPL+N+ L +A+ I+T ++ + IT
Sbjct: 139 LTTGEIIGQILSAEAIAGKRVNNIVFMGMGEPLSNFDNLADALEIITSHRGLEIGARHIT 198
Query: 202 VSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNS 261
+ST G V + K + + LAVSLH +VR QIMP + +PL +L+ AL+E+ +
Sbjct: 199 ISTSGFVPGLKKLAAYPRQIRLAVSLHGATDEVRDQIMPVNKKWPLSQLIPALEEWNRGR 258
Query: 262 QQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSF 321
Q +EYI++ +ND + A L ++ + VNLIP+N + + ++ S+++ SF
Sbjct: 259 NQMPTLEYILIRDINDSPKDASHLVRIAKRLHAKVNLIPYNTVEGLP-WKRPSEERCRSF 317
Query: 322 QKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDKISAKST 363
+ + + I T+R + G DI+ ACGQL + + S K++
Sbjct: 318 RDAVHKA-RIPVTMRYEKGHDINAACGQLRLRKEQEKSGKTS 358
>sp|Q5L0S1|RLMN_GEOKA Probable dual-specificity RNA methyltransferase RlmN OS=Geobacillus
kaustophilus (strain HTA426) GN=rlmN PE=3 SV=1
Length = 365
Score = 206 bits (524), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 114/329 (34%), Positives = 193/329 (58%), Gaps = 29/329 (8%)
Query: 31 IWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHSVV-DSSDDVTTKLLVKLQNG 89
I++++ +N ++ + +LP L S F +TL +VV +S D T K L +L +G
Sbjct: 47 IYEWLYQNRVTDFADMTNLPKRLREQLASSFS--ITTLKTVVKQTSKDGTIKFLFELHDG 104
Query: 90 GFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGE 149
+E V+MR++ +++C+++QVGC++GC FCA+ G K +L +GE
Sbjct: 105 YSIETVLMRHNYG--------------NSVCVTTQVGCRIGCTFCASTLGGLKRHLEAGE 150
Query: 150 IVEQLVHASRL-----SNIRNVVFMGMGEPLNNYAALVEAVRIMT---GLPFQVSPKRIT 201
IV Q+V + + ++V MG+GEP +NY AL++ +RI+ GL + + IT
Sbjct: 151 IVAQVVQVQKALDDTNERVSSIVVMGIGEPFDNYDALIKFLRIVNHPKGL--NIGARHIT 208
Query: 202 VSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNS 261
VST GI+ I +F + +N A+SLHAP ++R ++MP +A+PL KLM A++ Y + +
Sbjct: 209 VSTSGIIPKIYQFADEGMQINFAISLHAPTNELRTKLMPINKAYPLPKLMEAVRYYIEKT 268
Query: 262 QQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSF 321
+++ EY + GVND+ +HA QL +L++ + VNLIP N + + RT ++ +F
Sbjct: 269 GRRVTFEYGLFGGVNDQLEHAEQLAELIKGLKCHVNLIPVNYVPERNYVRTPR-SQIFAF 327
Query: 322 QKILRGSYNIRTTVRKQMGQDISGACGQL 350
++ L+ + I T+R++ G DI ACGQL
Sbjct: 328 ERALK-KHGINVTIRREHGHDIDAACGQL 355
>sp|B9L721|RLMN_NAUPA Dual-specificity RNA methyltransferase RlmN OS=Nautilia
profundicola (strain ATCC BAA-1463 / DSM 18972 / AmH)
GN=rlmN PE=3 SV=1
Length = 354
Score = 206 bits (523), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 125/343 (36%), Positives = 196/343 (57%), Gaps = 17/343 (4%)
Query: 17 EFEKAGIKQHF-IPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKF--KPLTSTLHSVVD 73
E + GI+ F ++++V +++E ++P + L+ +F PL H +
Sbjct: 13 ELMEFGIQPKFRTKQLYQWVYRKYVDDFEEMKNIPKDLKAKLKKEFIINPLELINHEI-- 70
Query: 74 SSDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNF 133
+ D T K L K+ + VE V+++ K +GK + + T+C+S+QVGCK+GC F
Sbjct: 71 -ATDGTEKFLFKMHDNHTVETVLIKMKDEEIK-DGKIKEA--KYTVCVSTQVGCKVGCAF 126
Query: 134 CATGTMGFKSNLSSGEIVEQLVHASRLSNIR-----NVVFMGMGEPLNNYAALVEAVRIM 188
C T GF NLS+GEIV Q+ + N NVV+MGMGEPL+NY ALV+A++I+
Sbjct: 127 CLTAKGGFVRNLSAGEIVAQVWWMKKFKNFDENKALNVVYMGMGEPLDNYDALVKAIKIL 186
Query: 189 TGLP-FQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPL 247
+SP+R TVST GI I + ++ G+NLA+SLHA ++R Q++P +A+ +
Sbjct: 187 ANPDGMNISPRRQTVSTSGIAPKIKRLGNENLGVNLAISLHAVDDELREQLIPLNKAYNI 246
Query: 248 EKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSV 307
E +++A++E+ + ++K+ EY+++ VND+ + A +L KLL VNLI FNP
Sbjct: 247 ESVIDAIREFPIDKRKKVMFEYLVIKDVNDDIESAKKLVKLLNGIPSKVNLIYFNPYPG- 305
Query: 308 SQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 350
+ F+ D + FQ L I T+RK G DIS ACGQL
Sbjct: 306 TNFKRPDDATMKKFQDYLINK-GIMCTIRKSKGMDISAACGQL 347
>sp|B1YG36|RLMN_EXIS2 Probable dual-specificity RNA methyltransferase RlmN
OS=Exiguobacterium sibiricum (strain DSM 17290 / JCM
13490 / 255-15) GN=rlmN PE=3 SV=1
Length = 357
Score = 206 bits (523), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 120/332 (36%), Positives = 184/332 (55%), Gaps = 30/332 (9%)
Query: 31 IWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHSVVDSSDDVTTKLLVKLQNGG 90
+W ++ + E ++ LL F + S +V S D T K L KL +G
Sbjct: 31 VWDWLYRKRVTTFAEMTNVNKDCLELLDQSF-AIDSMTQAVKQESADGTIKFLFKLYDGS 89
Query: 91 FVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEI 150
+E V+MR+ L ++C+++QVGC +GC+FCA+G + +LS+GEI
Sbjct: 90 LIETVLMRHKYGL--------------SVCVTTQVGCNIGCSFCASGLIKKSRDLSAGEI 135
Query: 151 VEQLVHAS-------RLSNIRNVVFMGMGEPLNNYAALVEAVRIM---TGLPFQVSPKRI 200
VEQ+++ + + +VV MG+GEP +N+ +V+ + ++ GL + + I
Sbjct: 136 VEQIMNVQHHLDAVGKEERVSHVVVMGIGEPFDNFDNMVDFLNVIKDHNGLA--IGARHI 193
Query: 201 TVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKN 260
TVST G+ I KF +NLA+SLHAP ++R QIM RA PLEKLM A+ Y K
Sbjct: 194 TVSTSGLADKIYKFADLKLQVNLAISLHAPNNELRTQIMKINRAIPLEKLMPAIDYYVKT 253
Query: 261 SQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQ--VVVNLIPFNPIGSVSQFRTSSDDKV 318
+ +KI IEYI+L GVND++ A +L KL E + VNLIP+NP+ Q++ S+ + +
Sbjct: 254 TNRKITIEYILLRGVNDQKAQAIELAKLFEDKRHLTYVNLIPYNPVDEHGQYQRSTSEDI 313
Query: 319 SSFQKILRGSYNIRTTVRKQMGQDISGACGQL 350
S+F L+ + + VR + G DI ACGQL
Sbjct: 314 STFYDTLKKN-GLNCGVRLEHGTDIDAACGQL 344
>sp|Q5WWH4|RLMN_LEGPL Dual-specificity RNA methyltransferase RlmN OS=Legionella
pneumophila (strain Lens) GN=rlmN PE=3 SV=1
Length = 382
Score = 206 bits (523), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 121/296 (40%), Positives = 174/296 (58%), Gaps = 28/296 (9%)
Query: 75 SDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFC 134
S D T K L+KL+ G +E V + P R TLC+SSQVGC + C+FC
Sbjct: 76 SADGTHKWLLKLECGNCIETVFI--------------PEANRGTLCVSSQVGCALNCSFC 121
Query: 135 ATGTMGFKSNLSSGEIVEQLVHASR-LSN--------IRNVVFMGMGEPLNNYAALVEAV 185
+T GF NLS+ EI+ Q+ A+R LS+ I NVV MGMGEPL N+ +V A+
Sbjct: 122 STAKQGFNRNLSTAEIIGQVWLAARELSDNDGTHDKKITNVVMMGMGEPLLNFDNVVSAM 181
Query: 186 RIMT-GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARA 244
IM L + +S +R+T+ST G++ + + P + LAVSLHAP ++R +++P +
Sbjct: 182 NIMMDDLAYGLSKRRVTLSTSGVIPEMERLREVSP-VALAVSLHAPTDELRNELVPINKK 240
Query: 245 FPLEKLMNALKEYQKNS-QQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNP 303
+PL +L++ K Y K+ ++K+ EY+ML GVND+ +HA QL KLL VNLIPFNP
Sbjct: 241 YPLSQLISLCKRYFKDEPRRKVTFEYVMLKGVNDQPEHASQLIKLLHNVPAKVNLIPFNP 300
Query: 304 IGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDKIS 359
++Q++ SS + + +F+ L + I T RK G DI ACGQL + DK S
Sbjct: 301 F-PLTQYQRSSRETIDAFRDKLM-KHGINTITRKTRGDDIDAACGQLAGEVKDKTS 354
>sp|Q0A989|RLMN_ALHEH Dual-specificity RNA methyltransferase RlmN OS=Alkalilimnicola
ehrlichei (strain MLHE-1) GN=rlmN PE=3 SV=1
Length = 360
Score = 205 bits (522), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 119/290 (41%), Positives = 172/290 (59%), Gaps = 24/290 (8%)
Query: 75 SDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFC 134
S+D T K L+++ G +E V + P R TLC+SSQVGC + C+FC
Sbjct: 71 SEDGTRKWLLRVDGGQAIETVFI--------------PDSGRGTLCVSSQVGCALDCSFC 116
Query: 135 ATGTMGFKSNLSSGEIVEQ-LVHASRLS----NIRNVVFMGMGEPLNNYAALVEAVRIMT 189
+T GF NLS+ EI+ Q V +L+ I NVVFMGMGEPL N A++ AVR+MT
Sbjct: 117 STAQQGFNRNLSTAEIIGQYYVAYDQLTGTGEQITNVVFMGMGEPLLNLEAVIPAVRLMT 176
Query: 190 -GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLE 248
+ +S +++T+ST G+V + + ++LAVSLHAP +R +++P R PLE
Sbjct: 177 DDDAYGLSKRKVTISTSGVVTMLERMREQ-TDVSLAVSLHAPNNALRDELVPINRKHPLE 235
Query: 249 KLMNALKEYQKNS-QQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSV 307
+L+ A Y + ++I EY+MLDGVND++ HAH+L +LL VNLIPFNP
Sbjct: 236 RLIPACAAYIADKPHRRITWEYVMLDGVNDQDHHAHELARLLGDIPSKVNLIPFNPFPG- 294
Query: 308 SQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDK 357
+++R S ++ F +IL+ S+ + T R GQDI GACGQLV + D+
Sbjct: 295 ARYRCSPRGRILRFVRILQ-SHGLTATTRVTRGQDIDGACGQLVGKVQDR 343
>sp|B1LAW7|RLMN_THESQ Probable dual-specificity RNA methyltransferase RlmN OS=Thermotoga
sp. (strain RQ2) GN=rlmN PE=3 SV=1
Length = 343
Score = 205 bits (522), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 120/339 (35%), Positives = 191/339 (56%), Gaps = 22/339 (6%)
Query: 16 AEFEKAGIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKFK-PLTSTLHSVVDS 74
AE G++++ I +V +DE +L +LL+ F P L V S
Sbjct: 14 AEVTSLGLERYRADQILDWVFNKKVNNFDEMTNLSKQHRALLKEHFSIPFLKLLDKKV-S 72
Query: 75 SDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFC 134
D TTK L +L++G +E+V++ + R T CIS+QVGC + C FC
Sbjct: 73 RIDGTTKFLWELEDGNTIESVMLFHPD--------------RITACISTQVGCPVKCIFC 118
Query: 135 ATGTMGFKSNLSSGEIVEQLVHASR--LSNIRNVVFMGMGEPLNNYAALVEAVRIMTGLP 192
ATG GF NL++GEIV Q++ R I NVV+MGMGEPL NY ++++RI+
Sbjct: 119 ATGMSGFVRNLTTGEIVAQILSMEREEKKKIGNVVYMGMGEPLLNYENTIKSIRILNHKK 178
Query: 193 F-QVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLM 251
+ +RIT+STVGI I + + + LA+SLHAP R Q++P + + +E+++
Sbjct: 179 MGNIGIRRITISTVGIPDRIIQLAEEGLDVKLALSLHAPTNFKRDQLVPLNKKYSIEEIL 238
Query: 252 NALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFR 311
NA+K YQ+ + ++ IEY+++ G+NDE A +L ++L+ ++ VNLIP NP + +
Sbjct: 239 NAVKIYQRKTGNRVTIEYVLIRGINDEISDAKKLAEILKNMKIFVNLIPVNP--TAEDLK 296
Query: 312 TSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 350
S +++ +F++IL + I +R++ G DI ACGQL
Sbjct: 297 KPSRERLLAFKRILLEN-GIEAEIRREKGSDIEAACGQL 334
>sp|Q12AB5|RLMN_POLSJ Dual-specificity RNA methyltransferase RlmN OS=Polaromonas sp.
(strain JS666 / ATCC BAA-500) GN=rlmN PE=3 SV=1
Length = 382
Score = 205 bits (521), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 133/326 (40%), Positives = 177/326 (54%), Gaps = 39/326 (11%)
Query: 56 LLRSKFKPLTSTLH----SVVDSSD--DVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGK 109
L RS + L + H VV D D T K L + G +EAV +
Sbjct: 48 LARSLREKLAGSAHIQGPKVVSRHDSADGTIKWLFDVGAGDVIEAVFI------------ 95
Query: 110 PRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN------- 162
P R TLCISSQ GC +GC FC+TG GF NL++GEIV QL A
Sbjct: 96 --PETDRGTLCISSQAGCAVGCRFCSTGHQGFSRNLTTGEIVSQLWFAEHFLRQHLGRQE 153
Query: 163 --IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLP 219
I NVV MGMGEPL NY+ LV A+R+M + +S +R+TVST G+V I++ D P
Sbjct: 154 RVISNVVMMGMGEPLQNYSQLVPALRVMLDDHGYGLSRRRVTVSTSGVVPMIDRLAKDCP 213
Query: 220 GLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQK-IFIEYIMLDGVNDE 278
+ LAVSLHAP +R ++P + +P+ +L+ A YQ ++ + I EY MLDGVND+
Sbjct: 214 -VALAVSLHAPQDALRDSLVPLNKKYPIAELLQACTRYQASAPRDFITFEYCMLDGVNDQ 272
Query: 279 EQHAHQLGKLLET-----FQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRT 333
+HA QL L++ NLIPFNP S + S+ +V++F KIL + I T
Sbjct: 273 PEHARQLVALMQNHSAGGLSCKFNLIPFNPF-PASGLKRSAMPQVAAFAKILMDA-GIVT 330
Query: 334 TVRKQMGQDISGACGQLVVNLPDKIS 359
TVRK G DI ACGQL ++ D+ S
Sbjct: 331 TVRKTRGDDIDAACGQLAGDVQDRTS 356
>sp|A1TM24|RLMN_ACIAC Dual-specificity RNA methyltransferase RlmN OS=Acidovorax citrulli
(strain AAC00-1) GN=rlmN PE=3 SV=1
Length = 373
Score = 205 bits (521), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 129/302 (42%), Positives = 172/302 (56%), Gaps = 33/302 (10%)
Query: 75 SDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFC 134
S D T K L + +G VE+V + P R TLCISSQ GC +GC FC
Sbjct: 73 SADGTVKWLFDVGDGNAVESVFI--------------PEDDRGTLCISSQAGCAVGCRFC 118
Query: 135 ATGTMGFKSNLSSGEIVEQLVHA-----SRLSN----IRNVVFMGMGEPLNNYAALVEAV 185
+TG GF NL+SGEIV QL A +RL I NVV MGMGEPL NY ALV A+
Sbjct: 119 STGHQGFSRNLTSGEIVAQLWFAEHALRARLGTQERVISNVVMMGMGEPLQNYTALVPAL 178
Query: 186 RIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARA 244
R M + +S +R+TVST G+V +++ D + +AVSLHAP +R Q++P R
Sbjct: 179 RTMLDDHGYGLSRRRLTVSTSGVVPMMDRLSQDC-AVAMAVSLHAPNDALRDQLVPLNRK 237
Query: 245 FPLEKLMNALKEYQKNSQQK-IFIEYIMLDGVNDEEQHAHQLGKLL-----ETFQVVVNL 298
+PL +L++A Y +++ + I EY MLDGVND+ +HA QL L+ E + NL
Sbjct: 238 YPLRELLDACTRYLEHAPRDFITFEYCMLDGVNDQPEHARQLIDLVRPRGGEGVRCKFNL 297
Query: 299 IPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDKI 358
IPFNP S S+ +V++F K+L + I TTVRK G DI ACGQL ++ D+
Sbjct: 298 IPFNPF-PASGLHRSNPQQVAAFAKMLSDA-GIVTTVRKTRGDDIDAACGQLAGDVKDRT 355
Query: 359 SA 360
A
Sbjct: 356 RA 357
>sp|Q2SDW1|RLMN_HAHCH Dual-specificity RNA methyltransferase RlmN OS=Hahella chejuensis
(strain KCTC 2396) GN=rlmN PE=3 SV=1
Length = 378
Score = 205 bits (521), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 131/355 (36%), Positives = 195/355 (54%), Gaps = 36/355 (10%)
Query: 18 FEKAGIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTS-TLHSVV--DS 74
FE G K+ + K++ ++D ++ A LR K K + ++ V+ D
Sbjct: 22 FESLGEKKFRATQLMKWMYHLGVSDFDLMTNMSKA----LREKLKEVAEVSVPEVIYEDI 77
Query: 75 SDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFC 134
S D T K +++L G +E V + P R TLC+SSQ+GC + C+FC
Sbjct: 78 SADGTRKWVMRLAGGNSIETVYI--------------PDNGRGTLCVSSQIGCSLDCSFC 123
Query: 135 ATGTMGFKSNLSSGEIVEQLVHASR------LSNIR---NVVFMGMGEPLNNYAALVEAV 185
+TG GF NLSS EI+ QL A+R LS R N+VFMGMGEPL N+ +V A
Sbjct: 124 STGKQGFNRNLSSAEIIGQLWIAARSFGDYDLSKERYVTNIVFMGMGEPLLNFDNVVRAC 183
Query: 186 RI-MTGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARA 244
+ M F +S +R+TVST G+V A++K D+ ++LA+SLHAP +R ++P +
Sbjct: 184 DVMMDDFGFGISKRRLTVSTSGLVPALDKL-GDVTDVSLAISLHAPNNSLRDVLVPVNKK 242
Query: 245 FPLEKLMNALKEY--QKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFN 302
+P+E+L+ A Y + + +++I +EY ++ GVND E HAH+L LL +NLIPFN
Sbjct: 243 YPIEELLAACHRYLGKLSDKRRITVEYTLIAGVNDSETHAHELRDLLRDLPCKINLIPFN 302
Query: 303 PIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDK 357
P + S + S + FQK+L + + TVR G DI ACGQLV + D+
Sbjct: 303 PFPN-SGYERPSRNATLRFQKVLSDAGYV-ATVRTTRGDDIDAACGQLVGRVEDR 355
>sp|Q7UPG1|Y6963_RHOBA Probable RNA methyltransferase RB6963 OS=Rhodopirellula baltica
(strain SH1) GN=RB6963 PE=3 SV=1
Length = 379
Score = 205 bits (521), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 117/309 (37%), Positives = 174/309 (56%), Gaps = 22/309 (7%)
Query: 68 LHSVVDSSDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGC 127
L+ +DS D TKLL + ++G +E+VI+R + R+TLC+SSQ+GC
Sbjct: 64 LYQRMDSEIDGATKLLFETESGMLIESVILRIATG-------------RTTLCVSSQIGC 110
Query: 128 KMGCNFCATGTMGFKSNLSSGEIVEQLVHASRL-----SNIRNVVFMGMGEPLNNYAALV 182
C+FCATG MG NL++ EI++Q+V A ++ + N+VFMGMGEPL+N +
Sbjct: 111 AAACDFCATGKMGIAKNLATEEILDQVVQAGQILRGEDRRLSNIVFMGMGEPLHNEVNVT 170
Query: 183 EAVRIMTGLP-FQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPA 241
EA+ ++T F SP + VSTVG+ + + P LNLA+SLH+ Q R +I+P
Sbjct: 171 EAIELLTAPDHFARSPSTVLVSTVGVPAGMLRLAKRFPNLNLALSLHSADQTTREKIIPL 230
Query: 242 ARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPF 301
+ L +L +A+ E Q ++ IEY+ML VND + A +L + +V VNLIP+
Sbjct: 231 GKKASLAQLHDAIHEIQTIQDREFMIEYLMLRDVNDSAKDADRLIDWIGDLRVHVNLIPY 290
Query: 302 NPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLV--VNLPDKIS 359
N I + SS + SF IL+ S ++TTVR +G DI ACGQL+ N +
Sbjct: 291 NTIEASPHLHASSRPVIESFADILKAS-GLKTTVRYSLGNDIEAACGQLIRQENRQRAMQ 349
Query: 360 AKSTPPVTD 368
A+ T +D
Sbjct: 350 ARRTESESD 358
>sp|Q9X240|RLMN_THEMA Probable dual-specificity RNA methyltransferase RlmN OS=Thermotoga
maritima (strain ATCC 43589 / MSB8 / DSM 3109 / JCM
10099) GN=rlmN PE=3 SV=1
Length = 343
Score = 205 bits (521), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 119/338 (35%), Positives = 189/338 (55%), Gaps = 20/338 (5%)
Query: 16 AEFEKAGIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHSVVDSS 75
E G++++ I +V + +DE +L +LL+ F L S
Sbjct: 14 TEITNLGLERYRADQILDWVFDKKVNNFDEMTNLSKKHRALLKEHFSISFLKLLDKKVSR 73
Query: 76 DDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCA 135
D TTK L +L++G +E+V++ + R T CIS+QVGC + C FCA
Sbjct: 74 IDGTTKFLWELEDGNTIESVMLFHPD--------------RITACISTQVGCPVKCIFCA 119
Query: 136 TGTMGFKSNLSSGEIVEQLVHASR--LSNIRNVVFMGMGEPLNNYAALVEAVRIMTGLPF 193
TG GF NL++GEIV Q++ + I NVV+MGMGEPL NY ++++RI+
Sbjct: 120 TGMSGFVRNLTTGEIVAQILSMEKEEKKKIGNVVYMGMGEPLLNYENTIKSIRILNHKKM 179
Query: 194 -QVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMN 252
+ +RIT+STVGI I + + + LA+SLHAP R Q++P + + +E+++N
Sbjct: 180 GNIGIRRITISTVGIPDRIIQLAEEGLDVKLALSLHAPTNFKRDQLVPLNKKYSIEEILN 239
Query: 253 ALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRT 312
A+K YQ+ + ++ IEY+++ G+NDE A +L ++L +V VNLIP NP +V R
Sbjct: 240 AVKIYQRKTGNRVTIEYVLIRGINDEISDAKKLAEILRNMKVFVNLIPVNP--TVEGLRR 297
Query: 313 SSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 350
S +++ +F++IL + I +R++ G DI ACGQL
Sbjct: 298 PSRERLLTFKRILLEN-GIEAEIRREKGTDIEAACGQL 334
>sp|C1DD41|RLMN_LARHH Dual-specificity RNA methyltransferase RlmN OS=Laribacter
hongkongensis (strain HLHK9) GN=rlmN PE=3 SV=1
Length = 366
Score = 205 bits (521), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 133/363 (36%), Positives = 193/363 (53%), Gaps = 35/363 (9%)
Query: 17 EFEKAGIKQHFIPLIWKYVIENPNCEW------DEFPSLPSAAYSLLRSKFKPLTSTLHS 70
+F + +HF + K W ++F ++ A SL T T+ S
Sbjct: 7 DFTLPALTEHFAAMGEKPFRAKQVMRWMHQMGQNDFDAMTDLAKSLRAKLHDTATVTVPS 66
Query: 71 VV--DSSDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCK 128
++ +S D T K L+ + G VE V + P R TLC+SSQVGC
Sbjct: 67 LMLEQASSDGTRKWLLDVGTGNRVETVFI--------------PEDDRGTLCVSSQVGCA 112
Query: 129 MGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN--------IRNVVFMGMGEPLNNYAA 180
+ C FC+TG GF NLS+ EI+ QL A++ I NVV MGMGEPL NY
Sbjct: 113 LECTFCSTGRQGFNRNLSTAEIIGQLWWANKSMGVTPKNERVISNVVMMGMGEPLANYDN 172
Query: 181 LVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIM 239
+V A+RIM + +S +R+T+ST G+V A+++ D P + LAVSLHAP +R +I+
Sbjct: 173 VVAAMRIMLDDHGYGLSRRRVTLSTSGLVPAMDRLREDCP-VALAVSLHAPNDRIRDEIV 231
Query: 240 PAARAFPLEKLMNALKEY-QKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNL 298
P + +PL +L+ A + Y +K + + EY+MLD +ND +HA +L L+ NL
Sbjct: 232 PINKKYPLRELLAACERYLEKAPRDFVTFEYVMLDQINDRPEHARELVALVRDVPCKFNL 291
Query: 299 IPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDKI 358
IPFNP + S + +S++ V +F+ IL + I TTVRK G+DI ACGQL + DK
Sbjct: 292 IPFNPFPN-SGYGRASNNAVRAFRDILAEAGYI-TTVRKTRGEDIDAACGQLAGQVQDKT 349
Query: 359 SAK 361
K
Sbjct: 350 QRK 352
>sp|Q5WJ42|CFR_BACSK Ribosomal RNA large subunit methyltransferase Cfr OS=Bacillus
clausii (strain KSM-K16) GN=cfr PE=3 SV=1
Length = 350
Score = 205 bits (521), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 114/315 (36%), Positives = 186/315 (59%), Gaps = 22/315 (6%)
Query: 43 WDEFPSLPSAAYSLLRSKFKPLTSTLHSVVDSSDDVTTKLLVKLQNGGFVEAVIMRYDSS 102
+++ +LP A L ++F P T+ V++++ TK+L+K+ VEAV M Y++
Sbjct: 42 FNKMTTLPKALRESLINEFGPSILTVEPVLETTSQQVTKVLLKVAGNNQVEAVRMHYEAG 101
Query: 103 LGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHAS-RLS 161
+ CISSQ GC +GC FC+TG +G K NLS+ E+ +QL++ +
Sbjct: 102 W-------------ESFCISSQCGCGLGCTFCSTGAIGLKQNLSADEMTDQLLYFYLKGH 148
Query: 162 NIRNVVFMGMGEPLNNYAALVEAVRIMTGLP-FQVSPKRITVSTVGIVHAINKFHSDLPG 220
++ +V FMGMGE L N + +A+ ++ F +SP+RITVSTVGI+ I + S P
Sbjct: 149 SLDSVSFMGMGEALAN-VRIFDALNVLVDRQLFALSPRRITVSTVGIIPNIQRMTSSFPQ 207
Query: 221 LNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQ 280
+NL SLH+P D R ++MP +PL+++MN L ++ + +K++I Y+ML GVND E+
Sbjct: 208 MNLTFSLHSPFHDQRSELMPINNKYPLDQVMNVLDQHIHETGRKVYIAYVMLRGVNDSEK 267
Query: 281 HAHQLGKLLETFQ----VVVNLIPFNP-IGSVSQFRTSSDDKVSSFQKILRGSYNIRTTV 335
HA L K + + VNLI +NP +G+ + + ++K+ +F ++++ S I T+
Sbjct: 268 HAEALVKRILNNRYPHLYHVNLIRYNPTVGTPENYGQTIEEKLQTFYRVVK-SARIPVTI 326
Query: 336 RKQMGQDISGACGQL 350
R Q G++I ACGQL
Sbjct: 327 RSQFGREIDAACGQL 341
>sp|Q5ZV93|RLMN_LEGPH Dual-specificity RNA methyltransferase RlmN OS=Legionella
pneumophila subsp. pneumophila (strain Philadelphia 1 /
ATCC 33152 / DSM 7513) GN=rlmN PE=3 SV=2
Length = 382
Score = 205 bits (521), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 121/296 (40%), Positives = 174/296 (58%), Gaps = 28/296 (9%)
Query: 75 SDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFC 134
S D T K L+KL+ G +E V + P R TLC+SSQVGC + C+FC
Sbjct: 76 SADGTHKWLLKLECGNCIETVFI--------------PEANRGTLCVSSQVGCALNCSFC 121
Query: 135 ATGTMGFKSNLSSGEIVEQLVHASR-LSN--------IRNVVFMGMGEPLNNYAALVEAV 185
+T GF NLS+ EI+ Q+ A+R LS+ I NVV MGMGEPL N+ +V A+
Sbjct: 122 STAKQGFNRNLSTAEIIGQVWLAARELSDNNGTHDKKITNVVMMGMGEPLLNFDNVVSAM 181
Query: 186 RIMT-GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARA 244
IM L + +S +R+T+ST G++ + + P + LAVSLHAP ++R +++P +
Sbjct: 182 NIMMDDLAYGLSKRRVTLSTSGVLPEMERLREVSP-VALAVSLHAPTDELRNELVPINKK 240
Query: 245 FPLEKLMNALKEYQKNS-QQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNP 303
+PL +L++ K Y K+ ++K+ EY+ML GVND+ +HA QL KLL VNLIPFNP
Sbjct: 241 YPLSQLISLCKRYFKDEPRRKVTFEYVMLKGVNDQPEHASQLIKLLHNVPAKVNLIPFNP 300
Query: 304 IGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDKIS 359
++Q++ SS + + +F+ L + I T RK G DI ACGQL + DK S
Sbjct: 301 F-PLTQYQRSSRETIDAFRDKLM-KHGINTITRKTRGDDIDAACGQLAGEVKDKTS 354
>sp|Q5X516|RLMN_LEGPA Dual-specificity RNA methyltransferase RlmN OS=Legionella
pneumophila (strain Paris) GN=rlmN PE=3 SV=1
Length = 382
Score = 204 bits (520), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 121/296 (40%), Positives = 174/296 (58%), Gaps = 28/296 (9%)
Query: 75 SDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFC 134
S D T K L+KL+ G +E V + P R TLC+SSQVGC + C+FC
Sbjct: 76 SADGTHKWLLKLECGNCIETVFI--------------PEANRGTLCVSSQVGCALNCSFC 121
Query: 135 ATGTMGFKSNLSSGEIVEQLVHASR-LSN--------IRNVVFMGMGEPLNNYAALVEAV 185
+T GF NLS+ EI+ Q+ A+R LS+ I NVV MGMGEPL N+ +V A+
Sbjct: 122 STAKQGFNRNLSTAEIIGQVWLAARELSDNNGTHDKKITNVVMMGMGEPLLNFDNVVSAM 181
Query: 186 RIMT-GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARA 244
IM L + +S +R+T+ST G++ + + P + LAVSLHAP ++R +++P +
Sbjct: 182 NIMMDDLAYGLSKRRVTLSTSGVLPEMERLREVSP-VALAVSLHAPTDELRNELVPINKK 240
Query: 245 FPLEKLMNALKEYQKNS-QQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNP 303
+PL +L++ K Y K+ ++K+ EY+ML GVND+ +HA QL KLL VNLIPFNP
Sbjct: 241 YPLSQLISLCKRYFKDEPRRKVTFEYVMLKGVNDQPEHASQLIKLLHNVPAKVNLIPFNP 300
Query: 304 IGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDKIS 359
++Q++ SS + + +F+ L + I T RK G DI ACGQL + DK S
Sbjct: 301 F-PLTQYQRSSRETIDAFRDKLM-KHGINTITRKTRGDDIDAACGQLAGEVKDKTS 354
>sp|A4IM49|RLMN_GEOTN Probable dual-specificity RNA methyltransferase RlmN OS=Geobacillus
thermodenitrificans (strain NG80-2) GN=rlmN PE=3 SV=1
Length = 364
Score = 204 bits (520), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 112/327 (34%), Positives = 190/327 (58%), Gaps = 25/327 (7%)
Query: 31 IWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHSVV-DSSDDVTTKLLVKLQNG 89
I++++ ++ E +LP L S F +TL ++V +S D T K L +L +G
Sbjct: 46 IYEWLYGKRVTDFAEMTNLPKRLREQLASAFS--ITTLKTIVKQTSKDGTIKFLFELHDG 103
Query: 90 GFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGE 149
+E V+MR++ +++C+++QVGC++GC FCA+ G K +L +GE
Sbjct: 104 YSIETVLMRHNYG--------------NSVCVTTQVGCRIGCTFCASTLGGLKRHLEAGE 149
Query: 150 IVEQLVHASRL-----SNIRNVVFMGMGEPLNNYAALVEAVRIMT-GLPFQVSPKRITVS 203
IV Q+V + + ++V MG+GEP +NY AL++ +RI+ + + ITVS
Sbjct: 150 IVAQVVQVQKALDETEERVSSIVVMGIGEPFDNYDALIKFLRIVNHSKGLNIGARHITVS 209
Query: 204 TVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQ 263
T GI+ I +F + +N A+SLHAP ++R ++MP +A+PL KLM A++ Y + + +
Sbjct: 210 TSGIIPKIYQFADEGMQINFAISLHAPTTELRTKLMPINKAYPLPKLMEAVRYYIEKTGR 269
Query: 264 KIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQK 323
++ EY + GVND+ +HA QL +LL+ + VNLIP N + + RT +++ +F++
Sbjct: 270 RVTFEYGLFGGVNDQLEHAEQLAELLKGLKCHVNLIPVNYVPERNYVRTPR-NQIFAFER 328
Query: 324 ILRGSYNIRTTVRKQMGQDISGACGQL 350
L+ + I T+R++ G DI ACGQL
Sbjct: 329 ALK-KHGINVTIRREHGHDIDAACGQL 354
>sp|Q833B6|RLMN_ENTFA Probable dual-specificity RNA methyltransferase RlmN
OS=Enterococcus faecalis (strain ATCC 700802 / V583)
GN=rlmN PE=3 SV=1
Length = 357
Score = 204 bits (520), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 120/345 (34%), Positives = 186/345 (53%), Gaps = 30/345 (8%)
Query: 18 FEKAGIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHSVVDSSDD 77
F G K+ +W+++ + E ++ + +LL F L +V + D
Sbjct: 18 FLAHGEKKFRATQVWEWLYTKRVASFSEMSNISKSLMTLLEENF-SLNPLKQVIVQEAQD 76
Query: 78 VTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATG 137
T K L +L + +E V+MR + L ++C+++QVGC +GC FCA+G
Sbjct: 77 GTVKYLFELPDKNMIETVLMRQEYGL--------------SVCVTTQVGCNIGCTFCASG 122
Query: 138 TMGFKSNLSSGEIVEQLVHASRLSNIR-------NVVFMGMGEPLNNYAALVEAVRIMT- 189
+ + +L++GEIV Q++ + R +VV MG+GEP +NYA ++ +R +
Sbjct: 123 LLKKQRDLTAGEIVAQIMWVQHYFDERGLDERVSHVVVMGIGEPFDNYANVMNFLRTIND 182
Query: 190 --GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPL 247
GL + + ITVST G+V I +F +NLA+SLHAP +VR IM R+FP+
Sbjct: 183 DKGLA--IGARHITVSTSGLVPKIREFADSGLQVNLAISLHAPNNEVRTSIMRINRSFPI 240
Query: 248 EKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVV--VNLIPFNPIG 305
EKLM A+ EY + + +++ EYIML VND +HA QL LL + + VNLIP+NP+
Sbjct: 241 EKLMAAIDEYIEKTNRRVTFEYIMLSQVNDRPEHAQQLADLLRNKKKLSYVNLIPYNPVS 300
Query: 306 SVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 350
Q+ SS + V F +L+ + I +RK+ G DI ACGQL
Sbjct: 301 EHDQYSRSSKEAVLKFYDVLKKN-GINCVIRKEHGTDIDAACGQL 344
>sp|A5ILF6|RLMN_THEP1 Probable dual-specificity RNA methyltransferase RlmN OS=Thermotoga
petrophila (strain RKU-1 / ATCC BAA-488 / DSM 13995)
GN=rlmN PE=3 SV=1
Length = 343
Score = 204 bits (520), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 120/339 (35%), Positives = 190/339 (56%), Gaps = 22/339 (6%)
Query: 16 AEFEKAGIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKFK-PLTSTLHSVVDS 74
E G++++ I ++ +DE +L +LL+ F P L V S
Sbjct: 14 TEITNLGLERYRADQILDWIFNKKVNNFDEMTNLSKKHRALLKEHFSIPFLKLLDKKV-S 72
Query: 75 SDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFC 134
D TTK L +L++G +E+V++ + R T CIS+QVGC + C FC
Sbjct: 73 RIDGTTKFLWELEDGNTIESVMLFHPD--------------RITACISTQVGCPVKCIFC 118
Query: 135 ATGTMGFKSNLSSGEIVEQLVHASR--LSNIRNVVFMGMGEPLNNYAALVEAVRIMTGLP 192
ATG GF NL++GEIV Q++ + I NVV+MGMGEPL NY ++++R +
Sbjct: 119 ATGMSGFVRNLTTGEIVAQILSMEKEEKKKIGNVVYMGMGEPLLNYENTIKSIRTLNHKK 178
Query: 193 F-QVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLM 251
+ +RIT+STVGI I + + + LA+SLHAP R Q++P + + +E+++
Sbjct: 179 MGNIGIRRITISTVGIPDRIIQLAEEGLDVKLALSLHAPTNFKRDQLVPLNKKYSIEEIL 238
Query: 252 NALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFR 311
NA+K YQK + ++ IEY+++ G+NDE A +L ++L+ +V VNLIP NP +V +
Sbjct: 239 NAVKIYQKKTGNRVTIEYVLIKGMNDEISDAKKLAEILKNMKVFVNLIPVNP--TVEDLK 296
Query: 312 TSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 350
S +++ +F++IL S I +R++ G DI ACGQL
Sbjct: 297 KPSRERLLTFKRILLES-GIEAEIRREKGADIEAACGQL 334
>sp|Q5SGZ3|RLMN_THET8 Probable dual-specificity RNA methyltransferase RlmN OS=Thermus
thermophilus (strain HB8 / ATCC 27634 / DSM 579) GN=rlmN
PE=3 SV=1
Length = 355
Score = 204 bits (519), Expect = 8e-52, Method: Compositional matrix adjust.
Identities = 119/329 (36%), Positives = 179/329 (54%), Gaps = 23/329 (6%)
Query: 42 EWDEFPSLPSAAYSLLRSKFKPLTSTLHSVVDSSDDVTTKLLVKLQNGGFVEAVIMRYDS 101
++ E LP A L +++ +L S D + K L L +G EAV M Y++
Sbjct: 39 DFSEMTDLPKALREALAREWRLSEFSLVQAFPSQDG-SVKYLFTLLDGKKTEAVYMPYEN 97
Query: 102 SLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLV---HAS 158
R T+C+S+ VGC GC FCATG +GF NL++ EI++QL+ +
Sbjct: 98 --------------RKTVCLSTMVGCPAGCTFCATGALGFGRNLTAAEILDQLLTIAYHQ 143
Query: 159 RLS--NIRNVVFMGMGEPLNNYAALVEAVRIMT-GLPFQVSPKRITVSTVGIVHAINKFH 215
LS IRNVV MGMGEPL N +++AVRIM +SP+R+T+STVGI I +
Sbjct: 144 GLSPREIRNVVLMGMGEPLLNLRNVLKAVRIMLHKKALALSPRRVTLSTVGIPKGIYRLA 203
Query: 216 SDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGV 275
+ G+ LA+SLHAP + R +I+P A +P+ ++M A++ Y +++++ EY +L GV
Sbjct: 204 EEDLGVRLALSLHAPDDETRRKIIPTAHRYPIAEIMEAVRHYHAKTKRRVTFEYTLLKGV 263
Query: 276 NDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTV 335
ND A L KLL+ VNLIPFNP T ++ +++ R + T++
Sbjct: 264 NDHLWQARLLAKLLKGLSAHVNLIPFNPWEGAPVVGTPRAGVLAFAEELKR--LGVPTSI 321
Query: 336 RKQMGQDISGACGQLVVNLPDKISAKSTP 364
R GQD+ ACGQL + +P ++ P
Sbjct: 322 RWSRGQDVGAACGQLALKVPRPLTLTPLP 350
>sp|Q8ELW7|RLMN_OCEIH Probable dual-specificity RNA methyltransferase RlmN
OS=Oceanobacillus iheyensis (strain DSM 14371 / JCM
11309 / KCTC 3954 / HTE831) GN=rlmN PE=3 SV=1
Length = 355
Score = 204 bits (519), Expect = 9e-52, Method: Compositional matrix adjust.
Identities = 115/339 (33%), Positives = 185/339 (54%), Gaps = 26/339 (7%)
Query: 22 GIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHSVVDSSDDVTTK 81
G K+ +W ++ + +DE ++ +A LL+ F L + + S D T K
Sbjct: 22 GEKRFRAEQVWNWLYKKRINSFDEMNNVNQSAIQLLKDNF-VLHTMGEEIRQESQDGTIK 80
Query: 82 LLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGF 141
L KL++G +E V+MR+ L ++C+++QVGC +GC FCA+G +
Sbjct: 81 FLFKLEDGNLIETVLMRFHYGL--------------SVCVTTQVGCNIGCTFCASGLLRK 126
Query: 142 KSNLSSGEIVEQLVHASRLSNIR-------NVVFMGMGEPLNNYAALVEAV-RIMTGLPF 193
+LSSGE+VEQ+++ + + R ++V MG+GEP +NY L++ + +
Sbjct: 127 SRDLSSGEVVEQIMNVQKHLDERGEKDRVSHIVVMGIGEPFDNYNNLMDFLYTVNDDRGL 186
Query: 194 QVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNA 253
+ + ITVST G+ H I +F D +NLA+SLHAP ++R +IM RAFP++KLM +
Sbjct: 187 NIGARHITVSTSGLAHKIYEFADDPIQVNLAISLHAPNDELRTKIMKINRAFPIDKLMKS 246
Query: 254 LKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQ--VVVNLIPFNPIGSVSQFR 311
+ Y + ++I EYIMLD VND ++ A +L L++ + VNLIP+N + +R
Sbjct: 247 VDYYLQKKNRRITYEYIMLDDVNDHKKEAIELANLIKNHRHLAYVNLIPYNTVDEHIDYR 306
Query: 312 TSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 350
S + + +F + L I VR + G DI ACGQL
Sbjct: 307 RSKSENIQAFYETL-TELGINCGVRWENGADIDAACGQL 344
>sp|A6TRW3|RLMN_ALKMQ Probable dual-specificity RNA methyltransferase RlmN
OS=Alkaliphilus metalliredigens (strain QYMF) GN=rlmN
PE=3 SV=1
Length = 352
Score = 204 bits (519), Expect = 9e-52, Method: Compositional matrix adjust.
Identities = 117/328 (35%), Positives = 178/328 (54%), Gaps = 19/328 (5%)
Query: 42 EWDEFPSLPSAAYSLLRSKFKPLTSTLHSVVDSSDDVTTKLLVKLQNGGFVEAVIMRYDS 101
+++E +L L + + + + S D T K L L +G +E V+M+Y
Sbjct: 41 QYEEMTNLSKKLIKQLSEETRITHNRIEEKFVSKIDGTVKYLFLLDDGHIIEGVLMKYKH 100
Query: 102 SLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQ--LVHASR 159
T CIS+QVGC MGC FCA+ T G NL +GE+++Q L+ +
Sbjct: 101 GF--------------TACISTQVGCAMGCQFCASTTGGLIRNLRAGEMIDQILLMQQDQ 146
Query: 160 LSNIRNVVFMGMGEPLNNYAALVEAVRIMTGLP-FQVSPKRITVSTVGIVHAINKFHSDL 218
I N+V MG GEPL+NY + ++I+ + + IT+ST G+V I K +
Sbjct: 147 GERISNIVLMGSGEPLHNYDETIRFLKIVNDPEGLNIGNRHITLSTCGLVPEIKKLGALQ 206
Query: 219 PGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDE 278
+NLA+SLHAP +R Q MP A+ + +++L+ + +Y +N+ ++I EY +++ VND
Sbjct: 207 IPINLAISLHAPNDQLRKQTMPIAQKYTIDQLIQSCYDYLENNNRRITFEYALIEDVNDG 266
Query: 279 EQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQ 338
E+ AH+L KLL+ VNLIP NPI + ++ S D +V FQ+IL+ S I T+R++
Sbjct: 267 EKEAHELSKLLKGLLCHVNLIPINPIEERT-YQKSKDSQVKKFQQILK-SNGIEATIRRE 324
Query: 339 MGQDISGACGQLVVNLPDKISAKSTPPV 366
MG DI GACGQL D K V
Sbjct: 325 MGTDIQGACGQLRRKYVDDQEKKEISEV 352
>sp|Q72HC1|RLMN_THET2 Probable dual-specificity RNA methyltransferase RlmN OS=Thermus
thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
GN=rlmN PE=3 SV=1
Length = 355
Score = 204 bits (518), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 119/329 (36%), Positives = 179/329 (54%), Gaps = 23/329 (6%)
Query: 42 EWDEFPSLPSAAYSLLRSKFKPLTSTLHSVVDSSDDVTTKLLVKLQNGGFVEAVIMRYDS 101
++ E LP A L +++ +L S D + K L L +G EAV M Y++
Sbjct: 39 DFSEMTDLPKALREALAREWRLSEFSLVQAFPSQDG-SVKYLFTLLDGKKTEAVYMPYEN 97
Query: 102 SLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLV---HAS 158
R T+C+S+ VGC GC FCATG +GF NL++ EI++QL+ +
Sbjct: 98 --------------RKTVCLSTMVGCPAGCTFCATGALGFGRNLTAAEILDQLLTIAYHQ 143
Query: 159 RLS--NIRNVVFMGMGEPLNNYAALVEAVRIMT-GLPFQVSPKRITVSTVGIVHAINKFH 215
LS IRNVV MGMGEPL N +++AVRIM +SP+R+T+STVGI I +
Sbjct: 144 GLSPREIRNVVLMGMGEPLLNLRNVLKAVRIMLHKKALALSPRRVTLSTVGIPKGIYRLA 203
Query: 216 SDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGV 275
+ G+ LA+SLHAP + R +I+P A +P+ ++M A++ Y +++++ EY +L GV
Sbjct: 204 EEDLGVRLALSLHAPDDETRRKIIPTAHRYPIAEIMEAVRHYHAKTKRRVTFEYTLLKGV 263
Query: 276 NDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTV 335
ND A L KLL+ VNLIPFNP T ++ +++ R + T++
Sbjct: 264 NDHLWQARLLAKLLKGLSAHVNLIPFNPWEGAPVAGTPKAGVLAFAEELKR--LGVPTSI 321
Query: 336 RKQMGQDISGACGQLVVNLPDKISAKSTP 364
R GQD+ ACGQL + +P ++ P
Sbjct: 322 RWSRGQDVGAACGQLALKVPRPLTLTPLP 350
>sp|A5IC42|RLMN_LEGPC Dual-specificity RNA methyltransferase RlmN OS=Legionella
pneumophila (strain Corby) GN=rlmN PE=3 SV=1
Length = 382
Score = 203 bits (516), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 120/297 (40%), Positives = 177/297 (59%), Gaps = 30/297 (10%)
Query: 75 SDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFC 134
S D T K L+KL+ G +E V + P R TLC+SSQVGC + C+FC
Sbjct: 76 SADGTHKWLLKLECGNCIETVFI--------------PEANRGTLCVSSQVGCALNCSFC 121
Query: 135 ATGTMGFKSNLSSGEIVEQLVHASR-LSN--------IRNVVFMGMGEPLNNYAALVEAV 185
+T GF NLS+ EI+ Q+ A+R LS+ I NVV MGMGEPL N+ +V A+
Sbjct: 122 STAKQGFNRNLSTAEIIGQVWLAARELSDNNGAHDKKITNVVMMGMGEPLLNFDNVVSAM 181
Query: 186 RIMT-GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARA 244
IM L + +S +R+T+ST G++ + + P + LAVSLHAP ++R +++P +
Sbjct: 182 SIMMDDLAYGLSKRRVTLSTSGVLPEMERLREVSP-VALAVSLHAPTDELRNELVPINKK 240
Query: 245 FPLEKLMNALKEYQKNS-QQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNP 303
+PL +L++ K Y K+ ++K+ EY+ML GVND+ +HA QL KLL VNLIPFNP
Sbjct: 241 YPLSQLISLCKRYFKDEPRRKVTFEYVMLKGVNDQPEHASQLIKLLHNVPAKVNLIPFNP 300
Query: 304 IGSVSQFRTSSDDKVSSFQ-KILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDKIS 359
++Q++ SS + + +F+ K+++ + I T RK G DI ACGQL + DK +
Sbjct: 301 F-PLTQYQRSSRETIDAFRDKLIK--HGINTITRKTRGDDIDAACGQLAGEVKDKTT 354
>sp|A1AL40|RLMN_PELPD Dual-specificity RNA methyltransferase RlmN OS=Pelobacter
propionicus (strain DSM 2379) GN=rlmN PE=3 SV=1
Length = 347
Score = 203 bits (516), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 117/321 (36%), Positives = 181/321 (56%), Gaps = 18/321 (5%)
Query: 31 IWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHSVVDSSDDVTTKLLVKLQNGG 90
++K++ ++ + E ++ + L +K +++ V+ D T K L L++G
Sbjct: 32 VFKWIYQHDARSFQEMTNISKDLRAELEAK-AYISNLEPEAVEVGGDGTRKYLFGLEDGN 90
Query: 91 FVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEI 150
VE+V++ P R+TLCISSQVGC MGC FC TGT NL++ EI
Sbjct: 91 SVESVLI--------------PDEGRNTLCISSQVGCAMGCAFCLTGTFRLTRNLTTAEI 136
Query: 151 VEQLVHASRLSNIRNVVFMGMGEPLNNYAALVEAVRIMT-GLPFQVSPKRITVSTVGIVH 209
V Q++ R IRN+V MGMGEPL+N ++ A+ IM G Q+S +R+TVST G+
Sbjct: 137 VNQIMAVRRDVEIRNIVMMGMGEPLHNLDNVIPAIHIMIDGNGLQLSNRRVTVSTCGLAP 196
Query: 210 AINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEY 269
+ + +LP +NLAVSL+A ++R +IMP R +PL++L++A +E+ ++K+ EY
Sbjct: 197 EMERLGRELPNVNLAVSLNATTDELRDRIMPINRRYPLKELLSACREFPLPGRRKVTFEY 256
Query: 270 IMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSY 329
+ML G+ND + A +L +L VNLIPFN +FR+ + + +F K L +
Sbjct: 257 VMLGGLNDTLEDAKRLLRLTSDIPNKVNLIPFNEFQGC-EFRSPTRAAIDAFHKYLIDRH 315
Query: 330 NIRTTVRKQMGQDISGACGQL 350
+ R G DIS ACGQL
Sbjct: 316 -VTVITRDSRGSDISAACGQL 335
>sp|A1W574|RLMN_ACISJ Dual-specificity RNA methyltransferase RlmN OS=Acidovorax sp.
(strain JS42) GN=rlmN PE=3 SV=1
Length = 374
Score = 203 bits (516), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 136/369 (36%), Positives = 196/369 (53%), Gaps = 41/369 (11%)
Query: 9 FDGGIIRAEFEKAGIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLT--S 66
FD + A E+ G K+ +++++ + ++D+ L + LR K + +
Sbjct: 8 FDLDGLAAFCERLGEKRFRATQLFRWIHQRGASDFDQMSDLAKS----LREKLRGCAHVA 63
Query: 67 TLHSVVDS-SDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQV 125
L ++ + S D T K L + +G VE V + P R TLCISSQ
Sbjct: 64 GLQAISEHVSADGTVKWLFDVGDGNAVETVFI--------------PEDDRGTLCISSQA 109
Query: 126 GCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN---------IRNVVFMGMGEPLN 176
GC +GC FC+TG GF NL++GEI+ QL +A I NVV MGMGEPL
Sbjct: 110 GCAVGCRFCSTGHQGFSRNLTTGEILAQLWYAEHALRQRRGDGERVISNVVMMGMGEPLQ 169
Query: 177 NYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVR 235
NYAALV A+R+M + +S +R+TVST G+V +++ D P + LAVSLHAP +R
Sbjct: 170 NYAALVPALRVMLDDHGYGLSRRRVTVSTSGVVPMMDRLAQDCP-VALAVSLHAPNDVLR 228
Query: 236 CQIMPAARAFPLEKLMNALKEYQKNSQQK-IFIEYIMLDGVNDEEQHAHQLGKLLET--- 291
++P R +PL +L+ A + Y ++ + I EY ML+GVND+ +HA QL L+
Sbjct: 229 DNLVPLNRKYPLHELLAACRRYLDHAPRDFITFEYCMLEGVNDQPEHARQLIDLVGRKAA 288
Query: 292 ---FQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACG 348
NLIPFNP S R S V++F ++L + I TTVRK G DI ACG
Sbjct: 289 DGGVSCKFNLIPFNPF-PASGLRRSPPAAVTAFAQLLSDA-GIVTTVRKTRGDDIDAACG 346
Query: 349 QLVVNLPDK 357
QL ++ D+
Sbjct: 347 QLAGDVKDR 355
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.136 0.398
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 135,601,710
Number of Sequences: 539616
Number of extensions: 5485772
Number of successful extensions: 17136
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 668
Number of HSP's successfully gapped in prelim test: 37
Number of HSP's that attempted gapping in prelim test: 13601
Number of HSP's gapped (non-prelim): 715
length of query: 375
length of database: 191,569,459
effective HSP length: 119
effective length of query: 256
effective length of database: 127,355,155
effective search space: 32602919680
effective search space used: 32602919680
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (28.5 bits)