Query 017203
Match_columns 375
No_of_seqs 323 out of 2623
Neff 7.5
Searched_HMMs 46136
Date Fri Mar 29 06:30:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017203.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017203hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK14461 ribosomal RNA large s 100.0 1.1E-95 2E-100 706.8 39.6 332 7-354 11-365 (371)
2 PRK14459 ribosomal RNA large s 100.0 2.3E-88 4.9E-93 662.0 40.3 331 7-353 25-371 (373)
3 PRK14465 ribosomal RNA large s 100.0 1.4E-88 3.1E-93 658.0 38.1 331 7-353 8-341 (342)
4 PRK14466 ribosomal RNA large s 100.0 4.5E-88 9.7E-93 653.1 38.7 339 1-357 2-341 (345)
5 COG0820 Predicted Fe-S-cluster 100.0 2.6E-88 5.6E-93 646.6 35.2 331 9-356 7-345 (349)
6 PRK14462 ribosomal RNA large s 100.0 2E-86 4.3E-91 646.2 39.3 342 7-356 6-353 (356)
7 PRK14467 ribosomal RNA large s 100.0 3.7E-86 8E-91 644.4 38.9 331 6-354 4-342 (348)
8 PRK14457 ribosomal RNA large s 100.0 1E-85 2.2E-90 641.3 40.2 335 3-355 1-344 (345)
9 PRK11194 ribosomal RNA large s 100.0 5.2E-85 1.1E-89 640.2 38.7 329 7-354 9-350 (372)
10 PRK14454 ribosomal RNA large s 100.0 7.9E-85 1.7E-89 635.3 39.1 333 6-355 4-340 (342)
11 TIGR00048 radical SAM enzyme, 100.0 1.6E-84 3.4E-89 636.6 39.6 332 8-356 11-348 (355)
12 PRK14470 ribosomal RNA large s 100.0 3.2E-84 6.9E-89 628.7 38.7 328 8-353 3-334 (336)
13 PRK14453 chloramphenicol/florf 100.0 1.2E-83 2.7E-88 627.0 39.2 334 6-356 2-345 (347)
14 PRK14460 ribosomal RNA large s 100.0 2.6E-83 5.7E-88 627.3 39.4 338 6-360 4-351 (354)
15 PRK14455 ribosomal RNA large s 100.0 6.1E-83 1.3E-87 625.6 39.3 333 7-356 14-352 (356)
16 PRK14464 ribosomal RNA large s 100.0 1.8E-83 4E-88 621.4 33.6 327 9-356 1-332 (344)
17 PRK14456 ribosomal RNA large s 100.0 1.6E-82 3.5E-87 623.0 39.4 329 8-353 22-365 (368)
18 PRK14463 ribosomal RNA large s 100.0 2.7E-82 5.9E-87 619.0 40.4 337 2-356 3-340 (349)
19 PRK14468 ribosomal RNA large s 100.0 5.4E-81 1.2E-85 609.1 39.4 329 3-355 1-335 (343)
20 PRK14469 ribosomal RNA large s 100.0 1E-80 2.2E-85 609.4 39.7 332 7-356 5-340 (343)
21 PRK11145 pflA pyruvate formate 100.0 3.6E-31 7.7E-36 248.3 21.3 210 103-334 13-245 (246)
22 COG1180 PflA Pyruvate-formate 100.0 7E-27 1.5E-31 220.5 23.3 224 88-332 13-243 (260)
23 TIGR01290 nifB nitrogenase cof 100.0 3.9E-27 8.5E-32 237.5 21.7 203 115-326 24-256 (442)
24 TIGR02493 PFLA pyruvate format 99.9 3.2E-25 6.9E-30 206.4 24.7 197 114-326 15-233 (235)
25 TIGR02494 PFLE_PFLC glycyl-rad 99.9 3.6E-25 7.7E-30 213.0 20.4 206 103-330 7-295 (295)
26 PRK00164 moaA molybdenum cofac 99.9 1.2E-24 2.6E-29 212.7 21.7 201 117-331 17-224 (331)
27 PRK10076 pyruvate formate lyas 99.9 1.5E-24 3.3E-29 198.7 20.3 179 142-335 16-211 (213)
28 PRK13762 tRNA-modifying enzyme 99.9 6.2E-23 1.3E-27 199.3 23.2 198 125-333 66-295 (322)
29 TIGR03821 AblA_like_1 lysine-2 99.9 9.1E-23 2E-27 198.2 18.4 231 72-339 68-313 (321)
30 PLN02951 Molybderin biosynthes 99.9 9.4E-22 2E-26 194.9 23.1 176 116-305 57-240 (373)
31 COG2896 MoaA Molybdenum cofact 99.9 7.5E-22 1.6E-26 188.8 20.8 177 116-306 10-193 (322)
32 TIGR02668 moaA_archaeal probab 99.9 1.5E-21 3.3E-26 188.4 22.1 175 117-305 10-189 (302)
33 PRK13361 molybdenum cofactor b 99.9 1.8E-21 4E-26 190.1 22.5 176 118-306 15-196 (329)
34 TIGR02495 NrdG2 anaerobic ribo 99.9 3.1E-21 6.8E-26 174.0 21.4 163 124-301 23-190 (191)
35 TIGR02666 moaA molybdenum cofa 99.9 1.5E-20 3.3E-25 184.0 21.9 176 118-306 11-195 (334)
36 TIGR03278 methan_mark_10 putat 99.8 2.3E-19 4.9E-24 178.5 23.1 179 143-335 52-249 (404)
37 COG0731 Fe-S oxidoreductases [ 99.8 2.6E-19 5.7E-24 169.3 21.3 199 126-333 33-248 (296)
38 PRK05301 pyrroloquinoline quin 99.8 1.8E-18 3.9E-23 172.2 24.8 195 116-325 15-218 (378)
39 COG2100 Predicted Fe-S oxidore 99.8 1.9E-18 4.1E-23 162.1 21.4 170 115-294 105-285 (414)
40 TIGR02109 PQQ_syn_pqqE coenzym 99.8 3.2E-18 7E-23 169.1 23.0 194 117-325 7-209 (358)
41 TIGR03470 HpnH hopanoid biosyn 99.8 9.1E-18 2E-22 163.3 23.1 171 117-305 28-204 (318)
42 COG1313 PflX Uncharacterized F 99.8 5.9E-17 1.3E-21 150.3 19.4 199 115-333 119-331 (335)
43 smart00729 Elp3 Elongator prot 99.8 4E-17 8.7E-22 147.0 17.7 182 118-308 2-195 (216)
44 TIGR03822 AblA_like_2 lysine-2 99.7 4.3E-16 9.3E-21 151.7 22.4 187 121-326 92-291 (321)
45 PRK13758 anaerobic sulfatase-m 99.7 3.8E-16 8.2E-21 154.9 21.9 192 124-325 12-221 (370)
46 TIGR00238 KamA family protein. 99.7 1E-15 2.2E-20 149.6 21.6 202 119-337 115-328 (331)
47 PF04055 Radical_SAM: Radical 99.7 8.4E-16 1.8E-20 132.8 16.3 156 123-289 3-166 (166)
48 cd01335 Radical_SAM Radical SA 99.7 4E-15 8.7E-20 132.1 18.2 177 123-311 3-187 (204)
49 TIGR03365 Bsubt_queE 7-cyano-7 99.7 1.1E-14 2.4E-19 136.0 21.5 161 116-304 22-188 (238)
50 PRK13745 anaerobic sulfatase-m 99.7 7E-15 1.5E-19 148.0 20.8 177 116-303 12-205 (412)
51 COG0535 Predicted Fe-S oxidore 99.6 4.8E-14 1E-18 137.6 22.9 178 115-306 17-200 (347)
52 TIGR03820 lys_2_3_AblA lysine- 99.6 7.3E-14 1.6E-18 139.0 23.1 187 116-325 109-308 (417)
53 COG5014 Predicted Fe-S oxidore 99.6 1.4E-14 2.9E-19 125.2 14.4 161 116-293 43-213 (228)
54 COG0641 AslB Arylsulfatase reg 99.6 6.8E-14 1.5E-18 138.4 19.7 169 127-304 18-195 (378)
55 PRK07094 biotin synthase; Prov 99.6 8.3E-13 1.8E-17 128.8 24.5 188 124-326 46-244 (323)
56 TIGR02491 NrdG anaerobic ribon 99.5 2.8E-14 6E-19 124.7 9.8 115 103-233 8-135 (154)
57 PRK09240 thiH thiamine biosynt 99.5 2.4E-12 5.2E-17 127.8 22.5 192 124-326 81-286 (371)
58 PF13353 Fer4_12: 4Fe-4S singl 99.5 1.3E-13 2.9E-18 117.5 8.2 87 114-209 5-96 (139)
59 TIGR00433 bioB biotin syntheta 99.5 2.2E-11 4.7E-16 117.2 24.5 186 124-326 36-236 (296)
60 TIGR01125 MiaB-like tRNA modif 99.4 1.2E-11 2.7E-16 125.2 22.4 184 117-309 135-331 (430)
61 PRK08508 biotin synthase; Prov 99.4 2.2E-11 4.8E-16 116.5 21.2 205 123-343 13-230 (279)
62 PF13394 Fer4_14: 4Fe-4S singl 99.4 3.6E-13 7.8E-18 112.0 7.6 99 125-228 6-110 (119)
63 TIGR02826 RNR_activ_nrdG3 anae 99.4 9.1E-13 2E-17 114.0 10.3 91 112-215 13-107 (147)
64 PRK06256 biotin synthase; Vali 99.4 5.4E-11 1.2E-15 116.7 22.6 201 125-341 66-279 (336)
65 PRK14862 rimO ribosomal protei 99.4 2.3E-11 5E-16 123.5 20.1 182 116-309 138-342 (440)
66 PRK14338 (dimethylallyl)adenos 99.4 4.2E-11 9.2E-16 122.2 20.8 183 116-308 154-350 (459)
67 COG0602 NrdG Organic radical a 99.4 1.5E-12 3.3E-17 119.4 8.4 85 115-209 21-111 (212)
68 TIGR02026 BchE magnesium-proto 99.4 5.2E-11 1.1E-15 122.8 20.6 175 120-304 196-378 (497)
69 PRK11121 nrdG anaerobic ribonu 99.4 3.9E-12 8.5E-17 111.1 10.5 87 113-208 15-108 (154)
70 COG1509 KamA Lysine 2,3-aminom 99.3 1.4E-10 3E-15 111.6 19.7 206 116-340 112-330 (369)
71 TIGR02351 thiH thiazole biosyn 99.3 1.7E-10 3.7E-15 114.5 20.4 191 123-326 79-285 (366)
72 TIGR03471 HpnJ hopanoid biosyn 99.3 2.6E-10 5.7E-15 116.9 21.4 174 119-304 198-378 (472)
73 TIGR03551 F420_cofH 7,8-dideme 99.3 2.7E-10 5.8E-15 112.1 20.4 193 121-326 43-265 (343)
74 TIGR00089 RNA modification enz 99.3 2.8E-10 6.2E-15 115.3 20.9 184 116-309 138-335 (429)
75 PRK05481 lipoyl synthase; Prov 99.3 5.4E-10 1.2E-14 107.4 21.6 202 117-332 53-265 (289)
76 PRK15108 biotin synthase; Prov 99.3 1E-09 2.3E-14 108.0 23.9 187 124-326 50-251 (345)
77 TIGR03699 mena_SCO4550 menaqui 99.3 2.7E-10 5.8E-15 112.0 19.7 195 124-326 48-263 (340)
78 PRK14334 (dimethylallyl)adenos 99.3 7E-10 1.5E-14 112.7 23.0 183 115-308 136-332 (440)
79 TIGR00423 radical SAM domain p 99.3 5.6E-10 1.2E-14 108.3 20.3 197 119-326 7-230 (309)
80 PRK14332 (dimethylallyl)adenos 99.3 7.5E-10 1.6E-14 112.6 21.8 181 117-308 154-346 (449)
81 TIGR01579 MiaB-like-C MiaB-lik 99.3 9.3E-10 2E-14 111.0 22.0 181 117-309 138-334 (414)
82 PRK12928 lipoyl synthase; Prov 99.2 9.8E-10 2.1E-14 105.5 20.5 203 117-332 60-273 (290)
83 PLN02389 biotin synthase 99.2 2.5E-09 5.4E-14 106.3 23.5 186 124-326 90-293 (379)
84 COG2108 Uncharacterized conser 99.2 4.5E-10 9.7E-15 106.4 16.1 211 115-356 28-267 (353)
85 PRK05799 coproporphyrinogen II 99.2 3.1E-09 6.6E-14 105.8 23.1 202 117-332 6-230 (374)
86 PRK14325 (dimethylallyl)adenos 99.2 2.1E-09 4.6E-14 109.4 22.1 183 116-309 146-345 (444)
87 TIGR00539 hemN_rel putative ox 99.2 3.6E-09 7.7E-14 104.9 22.9 201 118-332 4-227 (360)
88 PRK06245 cofG FO synthase subu 99.2 1.2E-09 2.6E-14 107.2 19.3 192 120-326 15-236 (336)
89 TIGR00510 lipA lipoate synthas 99.2 4.8E-09 1E-13 101.2 22.8 205 116-332 62-276 (302)
90 PRK14331 (dimethylallyl)adenos 99.2 2.2E-09 4.7E-14 109.1 21.5 183 116-309 145-341 (437)
91 PRK06267 hypothetical protein; 99.2 3.4E-09 7.4E-14 104.6 22.2 186 124-326 34-231 (350)
92 PRK14328 (dimethylallyl)adenos 99.2 2.3E-09 5E-14 109.0 21.4 182 116-308 146-342 (439)
93 PRK14327 (dimethylallyl)adenos 99.2 4.9E-09 1.1E-13 107.9 23.7 185 115-309 210-408 (509)
94 PRK14326 (dimethylallyl)adenos 99.2 4.5E-09 9.8E-14 108.4 23.3 183 116-308 156-352 (502)
95 PRK05660 HemN family oxidoredu 99.2 5.7E-09 1.2E-13 104.1 23.0 177 117-304 9-199 (378)
96 PRK14336 (dimethylallyl)adenos 99.2 2.7E-09 5.8E-14 107.8 20.7 183 115-308 122-319 (418)
97 PRK14339 (dimethylallyl)adenos 99.2 4.7E-09 1E-13 106.1 22.4 183 116-309 126-326 (420)
98 KOG2876 Molybdenum cofactor bi 99.2 3.4E-11 7.3E-16 110.8 6.2 182 116-311 10-198 (323)
99 PRK13347 coproporphyrinogen II 99.2 9.6E-09 2.1E-13 104.8 24.3 176 117-302 51-242 (453)
100 PRK14340 (dimethylallyl)adenos 99.2 1.9E-09 4.1E-14 109.7 19.0 183 116-309 148-344 (445)
101 TIGR01578 MiaB-like-B MiaB-lik 99.2 4.5E-09 9.7E-14 106.3 21.5 184 116-309 132-329 (420)
102 PRK09249 coproporphyrinogen II 99.1 1.1E-08 2.5E-13 104.3 24.1 199 125-332 57-281 (453)
103 PRK14330 (dimethylallyl)adenos 99.1 6E-09 1.3E-13 105.8 21.9 184 116-309 139-336 (434)
104 TIGR01574 miaB-methiolase tRNA 99.1 5E-09 1.1E-13 106.5 21.2 184 115-309 143-343 (438)
105 PRK08446 coproporphyrinogen II 99.1 9.5E-09 2.1E-13 101.5 22.5 197 125-332 8-222 (350)
106 PRK14337 (dimethylallyl)adenos 99.1 8.9E-09 1.9E-13 104.9 22.9 180 115-304 146-341 (446)
107 PLN02428 lipoic acid synthase 99.1 1.3E-08 2.8E-13 99.6 22.4 213 116-342 102-331 (349)
108 TIGR00538 hemN oxygen-independ 99.1 1.4E-08 3.1E-13 103.7 23.8 169 125-301 57-240 (455)
109 PRK14329 (dimethylallyl)adenos 99.1 3.1E-09 6.7E-14 108.7 18.8 185 116-309 167-369 (467)
110 PRK08599 coproporphyrinogen II 99.1 1.1E-08 2.5E-13 101.9 22.3 177 117-304 4-192 (377)
111 PRK14335 (dimethylallyl)adenos 99.1 6E-09 1.3E-13 106.4 19.2 184 116-308 151-353 (455)
112 PRK08207 coproporphyrinogen II 99.1 3.7E-08 7.9E-13 101.2 24.4 206 117-332 164-398 (488)
113 PRK05628 coproporphyrinogen II 99.1 4.4E-08 9.4E-13 97.6 23.7 176 117-304 5-200 (375)
114 PRK14333 (dimethylallyl)adenos 99.1 1.5E-08 3.3E-13 103.2 20.2 183 117-309 148-351 (448)
115 PRK08208 coproporphyrinogen II 99.0 5.3E-08 1.2E-12 98.7 23.6 206 117-332 40-266 (430)
116 COG0621 MiaB 2-methylthioadeni 99.0 1.3E-08 2.7E-13 102.3 17.9 184 115-308 142-340 (437)
117 TIGR01212 radical SAM protein, 99.0 6.4E-08 1.4E-12 93.7 22.4 200 123-333 24-255 (302)
118 TIGR03700 mena_SCO4494 putativ 99.0 3.7E-08 8.1E-13 97.3 20.1 195 121-326 52-272 (351)
119 TIGR01210 conserved hypothetic 99.0 1.5E-07 3.3E-12 91.5 24.0 207 115-333 14-249 (313)
120 PRK00955 hypothetical protein; 99.0 3.9E-08 8.3E-13 102.5 19.0 186 112-304 287-519 (620)
121 COG1625 Fe-S oxidoreductase, r 99.0 2.2E-08 4.7E-13 98.3 15.9 198 131-335 44-255 (414)
122 PRK08445 hypothetical protein; 98.9 2.3E-07 5E-12 91.5 19.9 160 124-294 49-225 (348)
123 PRK07360 FO synthase subunit 2 98.9 2.3E-07 5E-12 92.4 20.0 168 124-302 67-256 (371)
124 COG0502 BioB Biotin synthase a 98.8 4.9E-07 1.1E-11 87.6 19.4 208 117-343 52-274 (335)
125 TIGR03550 F420_cofG 7,8-dideme 98.8 2E-07 4.2E-12 91.1 17.0 192 119-326 6-232 (322)
126 PRK07379 coproporphyrinogen II 98.8 1.6E-06 3.6E-11 87.1 23.7 203 118-332 12-246 (400)
127 PRK09613 thiH thiamine biosynt 98.8 2.1E-06 4.6E-11 87.5 23.4 206 125-338 92-320 (469)
128 COG1964 Predicted Fe-S oxidore 98.8 1.8E-07 3.8E-12 92.5 14.8 153 134-304 78-243 (475)
129 PRK05904 coproporphyrinogen II 98.8 2.4E-06 5.3E-11 84.5 22.9 196 125-332 14-229 (353)
130 PRK06294 coproporphyrinogen II 98.7 2.4E-06 5.3E-11 85.0 22.7 167 125-304 14-195 (370)
131 PRK08444 hypothetical protein; 98.7 1.3E-06 2.9E-11 86.2 20.5 193 124-326 56-271 (353)
132 PRK01254 hypothetical protein; 98.7 9.4E-07 2E-11 92.0 19.6 179 111-295 366-588 (707)
133 PRK05927 hypothetical protein; 98.7 5.5E-07 1.2E-11 88.8 16.7 194 125-326 53-269 (350)
134 PRK09058 coproporphyrinogen II 98.7 5.4E-06 1.2E-10 84.6 24.0 198 125-332 69-295 (449)
135 COG1032 Fe-S oxidoreductase [E 98.7 7.6E-07 1.7E-11 90.8 16.6 186 117-310 198-401 (490)
136 PRK09057 coproporphyrinogen II 98.6 9.6E-06 2.1E-10 81.1 23.8 196 125-332 12-234 (380)
137 PRK05926 hypothetical protein; 98.6 1.2E-06 2.5E-11 87.1 16.7 160 124-295 75-251 (370)
138 COG1533 SplB DNA repair photol 98.6 3.3E-06 7.1E-11 81.4 18.8 165 120-295 32-214 (297)
139 PRK08898 coproporphyrinogen II 98.6 1.5E-05 3.2E-10 80.1 23.4 197 125-332 27-248 (394)
140 PRK08629 coproporphyrinogen II 98.6 1.4E-05 3E-10 81.2 22.4 199 117-326 53-266 (433)
141 PRK09234 fbiC FO synthase; Rev 98.5 7.1E-06 1.5E-10 89.2 20.8 202 114-326 519-752 (843)
142 PRK06582 coproporphyrinogen II 98.5 4E-05 8.7E-10 76.8 24.5 202 117-331 12-240 (390)
143 PTZ00413 lipoate synthase; Pro 98.4 0.00017 3.6E-09 71.1 24.3 214 116-340 149-377 (398)
144 COG1856 Uncharacterized homolo 98.3 4.7E-05 1E-09 69.2 16.7 186 124-327 18-216 (275)
145 PRK09234 fbiC FO synthase; Rev 98.2 9.7E-05 2.1E-09 80.5 18.6 188 123-326 77-301 (843)
146 COG1244 Predicted Fe-S oxidore 98.0 0.00091 2E-08 64.1 20.2 203 114-326 45-278 (358)
147 TIGR01211 ELP3 histone acetylt 98.0 0.0016 3.4E-08 67.6 23.7 194 125-326 76-330 (522)
148 TIGR03279 cyano_FeS_chp putati 98.0 0.0001 2.2E-09 73.9 14.1 84 203-292 123-206 (433)
149 COG1060 ThiH Thiamine biosynth 97.9 0.00051 1.1E-08 68.2 16.5 200 124-334 66-291 (370)
150 COG0635 HemN Coproporphyrinoge 97.7 0.0065 1.4E-07 61.5 20.9 168 117-294 35-218 (416)
151 COG2516 Biotin synthase-relate 97.6 0.0028 6E-08 60.8 15.5 197 115-322 27-246 (339)
152 COG0320 LipA Lipoate synthase 97.5 0.021 4.5E-07 53.8 19.1 202 116-331 70-281 (306)
153 COG1031 Uncharacterized Fe-S o 97.1 0.031 6.8E-07 56.1 16.7 173 112-292 177-388 (560)
154 cd03174 DRE_TIM_metallolyase D 97.0 0.084 1.8E-06 49.6 18.6 184 141-343 12-205 (265)
155 KOG1160 Fe-S oxidoreductase [E 96.9 0.01 2.2E-07 59.1 11.3 149 167-326 358-512 (601)
156 KOG2672 Lipoate synthase [Coen 96.7 0.062 1.3E-06 50.7 13.9 200 117-333 112-326 (360)
157 COG1243 ELP3 Histone acetyltra 96.2 0.66 1.4E-05 47.0 18.7 117 200-323 187-319 (515)
158 COG4277 Predicted DNA-binding 96.0 0.25 5.4E-06 47.3 14.1 219 124-348 61-311 (404)
159 COG1242 Predicted Fe-S oxidore 95.4 0.9 2E-05 43.2 15.5 110 221-336 144-263 (312)
160 KOG2492 CDK5 activator-binding 94.3 0.51 1.1E-05 47.0 11.2 56 115-171 218-274 (552)
161 KOG4355 Predicted Fe-S oxidore 92.4 4 8.6E-05 40.6 13.7 178 117-308 187-383 (547)
162 KOG2900 Biotin synthase [Coenz 90.5 1.3 2.9E-05 41.4 8.0 152 124-292 91-255 (380)
163 TIGR03279 cyano_FeS_chp putati 77.4 32 0.0007 35.1 11.6 61 125-192 82-177 (433)
164 PF14824 Sirohm_synth_M: Siroh 74.0 3.8 8.2E-05 25.5 2.5 19 197-215 4-22 (30)
165 PF08902 DUF1848: Domain of un 69.5 95 0.0021 29.6 12.0 87 246-333 94-198 (266)
166 COG0329 DapA Dihydrodipicolina 67.5 1.2E+02 0.0026 29.2 14.0 128 144-287 21-156 (299)
167 TIGR00683 nanA N-acetylneurami 52.2 2.2E+02 0.0048 27.2 13.4 128 144-287 17-154 (290)
168 PF11823 DUF3343: Protein of u 52.0 20 0.00043 26.8 3.4 23 280-302 12-34 (73)
169 PRK14842 undecaprenyl pyrophos 51.9 1.8E+02 0.0039 27.3 10.5 101 247-353 38-152 (241)
170 cd03028 GRX_PICOT_like Glutare 51.1 30 0.00065 26.8 4.5 67 115-184 8-83 (90)
171 COG0813 DeoD Purine-nucleoside 48.7 2.3E+02 0.0049 26.4 10.2 102 164-278 58-164 (236)
172 TIGR02660 nifV_homocitr homoci 48.5 2.8E+02 0.0061 27.4 20.3 182 141-343 16-200 (365)
173 cd01965 Nitrogenase_MoFe_beta_ 47.0 99 0.0022 31.3 8.7 32 269-300 158-189 (428)
174 COG0436 Aspartate/tyrosine/aro 46.4 2E+02 0.0044 28.8 10.7 47 280-333 151-199 (393)
175 cd01966 Nitrogenase_NifN_1 Nit 44.4 1.4E+02 0.0031 30.2 9.3 32 269-300 160-191 (417)
176 PRK04147 N-acetylneuraminate l 43.9 2.9E+02 0.0063 26.3 13.0 129 144-287 20-156 (293)
177 TIGR03249 KdgD 5-dehydro-4-deo 43.8 1.7E+02 0.0037 28.0 9.4 65 274-344 80-144 (296)
178 PRK14477 bifunctional nitrogen 43.5 1.1E+02 0.0024 34.4 9.0 32 269-300 647-678 (917)
179 TIGR01286 nifK nitrogenase mol 42.7 2E+02 0.0043 30.1 10.2 31 270-300 224-254 (515)
180 PRK11858 aksA trans-homoaconit 42.0 3.7E+02 0.0079 26.8 20.6 178 142-342 20-202 (378)
181 PF06415 iPGM_N: BPG-independe 41.2 2.5E+02 0.0054 26.0 9.5 79 247-330 13-94 (223)
182 cd01974 Nitrogenase_MoFe_beta 41.1 2.5E+02 0.0055 28.4 10.6 31 270-300 164-194 (435)
183 cd06840 PLPDE_III_Bif_AspK_Dap 39.8 3.8E+02 0.0083 26.4 11.9 175 163-356 81-268 (368)
184 TIGR02090 LEU1_arch isopropylm 39.8 3.9E+02 0.0084 26.5 21.0 181 141-342 15-198 (363)
185 smart00642 Aamy Alpha-amylase 39.5 1.3E+02 0.0028 26.3 7.1 21 314-335 68-88 (166)
186 cd00951 KDGDH 5-dehydro-4-deox 39.0 2.2E+02 0.0047 27.1 9.2 65 274-344 75-139 (289)
187 PRK03620 5-dehydro-4-deoxygluc 38.7 2.4E+02 0.0052 27.1 9.5 65 273-344 81-146 (303)
188 COG1035 FrhB Coenzyme F420-red 38.3 61 0.0013 31.9 5.3 83 10-99 129-230 (332)
189 cd07939 DRE_TIM_NifV Streptomy 38.2 3.4E+02 0.0073 25.3 20.7 180 142-341 14-195 (259)
190 COG1453 Predicted oxidoreducta 37.9 1.9E+02 0.0042 28.9 8.6 109 163-289 111-225 (391)
191 PRK14476 nitrogenase molybdenu 37.9 2.8E+02 0.006 28.5 10.3 32 269-300 171-202 (455)
192 TIGR02803 ExbD_1 TonB system t 37.7 1.9E+02 0.0042 23.6 7.6 56 144-205 66-121 (122)
193 TIGR00674 dapA dihydrodipicoli 37.4 2.2E+02 0.0047 27.0 8.9 60 271-337 70-131 (285)
194 TIGR02932 vnfK_nitrog V-contai 36.3 2.8E+02 0.0061 28.5 10.1 30 270-300 170-199 (457)
195 cd05015 SIS_PGI_1 Phosphogluco 36.1 2.8E+02 0.0061 23.8 9.7 68 162-234 19-89 (158)
196 TIGR00666 PBP4 D-alanyl-D-alan 35.2 52 0.0011 32.5 4.3 30 164-193 55-84 (345)
197 PRK01076 L-rhamnose isomerase; 35.0 2.2E+02 0.0049 28.8 8.6 119 142-279 67-194 (419)
198 COG1168 MalY Bifunctional PLP- 34.4 5E+02 0.011 26.2 13.1 152 145-334 38-195 (388)
199 cd01320 ADA Adenosine deaminas 33.7 4.3E+02 0.0092 25.3 10.5 83 248-337 111-193 (325)
200 PRK03620 5-dehydro-4-deoxygluc 32.5 4.6E+02 0.0099 25.1 15.3 125 144-286 24-154 (303)
201 TIGR00262 trpA tryptophan synt 32.2 4.3E+02 0.0094 24.8 11.3 47 144-192 68-115 (256)
202 PF13344 Hydrolase_6: Haloacid 31.8 40 0.00086 26.8 2.4 37 163-208 5-41 (101)
203 PF05853 DUF849: Prokaryotic p 31.3 4.6E+02 0.01 24.9 13.5 162 144-326 22-195 (272)
204 TIGR01283 nifE nitrogenase mol 31.3 4.9E+02 0.011 26.6 10.9 71 269-340 200-278 (456)
205 COG0276 HemH Protoheme ferro-l 30.9 3.9E+02 0.0085 26.2 9.5 106 172-292 202-317 (320)
206 COG2875 CobM Precorrin-4 methy 30.9 1.3E+02 0.0028 28.2 5.8 49 142-193 56-104 (254)
207 cd00952 CHBPH_aldolase Trans-o 30.6 5E+02 0.011 25.0 13.5 47 144-191 25-73 (309)
208 cd01973 Nitrogenase_VFe_beta_l 29.2 4.5E+02 0.0098 26.9 10.2 31 269-300 165-195 (454)
209 PF00070 Pyr_redox: Pyridine n 29.1 2.4E+02 0.0051 20.8 6.7 49 281-334 10-58 (80)
210 KOG3954 Electron transfer flav 29.0 33 0.00071 32.6 1.6 83 146-231 198-287 (336)
211 TIGR00365 monothiol glutaredox 28.4 1.1E+02 0.0025 24.0 4.5 66 115-183 12-86 (97)
212 COG0329 DapA Dihydrodipicolina 28.4 4.3E+02 0.0094 25.4 9.4 52 279-336 85-136 (299)
213 PRK05434 phosphoglyceromutase; 28.2 4.4E+02 0.0095 27.6 9.9 81 246-331 94-177 (507)
214 cd03466 Nitrogenase_NifN_2 Nit 28.2 4.8E+02 0.01 26.4 10.1 31 269-300 158-188 (429)
215 cd07948 DRE_TIM_HCS Saccharomy 27.2 5.3E+02 0.012 24.3 21.5 181 141-342 15-198 (262)
216 cd00951 KDGDH 5-dehydro-4-deox 26.9 5.5E+02 0.012 24.3 15.5 47 144-191 17-65 (289)
217 cd00316 Oxidoreductase_nitroge 26.8 6.1E+02 0.013 24.9 10.5 30 271-300 157-186 (399)
218 PRK00507 deoxyribose-phosphate 26.5 3E+02 0.0065 25.3 7.5 148 141-326 15-177 (221)
219 PF06265 DUF1027: Protein of u 26.1 25 0.00055 27.4 0.3 8 126-133 75-82 (86)
220 cd07940 DRE_TIM_IPMS 2-isoprop 26.0 5.5E+02 0.012 24.0 20.7 181 142-342 14-203 (268)
221 TIGR00250 RNAse_H_YqgF RNAse H 25.8 2.6E+02 0.0056 23.4 6.4 60 280-343 35-96 (130)
222 TIGR01307 pgm_bpd_ind 2,3-bisp 25.5 5.6E+02 0.012 26.8 10.0 80 246-330 90-172 (501)
223 PF07499 RuvA_C: RuvA, C-termi 25.5 63 0.0014 21.9 2.2 28 11-38 3-30 (47)
224 TIGR01861 ANFD nitrogenase iro 25.2 8E+02 0.017 25.7 13.3 70 271-341 207-284 (513)
225 COG4822 CbiK Cobalamin biosynt 25.2 5.6E+02 0.012 23.9 11.1 80 249-336 153-235 (265)
226 COG1327 Predicted transcriptio 25.1 28 0.00062 30.1 0.5 11 129-139 1-11 (156)
227 TIGR03278 methan_mark_10 putat 25.0 4.1E+02 0.0089 26.9 8.8 131 144-299 226-363 (404)
228 COG3904 Predicted periplasmic 24.5 2.9E+02 0.0062 25.6 6.7 71 115-193 31-103 (245)
229 PRK13111 trpA tryptophan synth 24.3 6E+02 0.013 23.9 10.7 49 143-192 69-117 (258)
230 PF14871 GHL6: Hypothetical gl 24.3 1.6E+02 0.0035 24.7 5.0 63 282-345 2-72 (132)
231 COG4015 Predicted dinucleotide 24.1 89 0.0019 27.7 3.3 37 162-208 108-144 (217)
232 PLN02417 dihydrodipicolinate s 24.1 6.1E+02 0.013 23.9 12.7 126 144-287 18-151 (280)
233 TIGR00674 dapA dihydrodipicoli 24.1 6.1E+02 0.013 23.9 14.0 47 144-191 15-63 (285)
234 cd07940 DRE_TIM_IPMS 2-isoprop 23.9 4.6E+02 0.01 24.5 8.6 83 144-232 106-199 (268)
235 PRK00109 Holliday junction res 23.5 2.9E+02 0.0062 23.4 6.4 28 313-340 72-99 (138)
236 TIGR00244 transcriptional regu 23.5 41 0.00088 29.1 1.1 11 129-139 1-11 (147)
237 cd03029 GRX_hybridPRX5 Glutare 23.2 31 0.00067 25.2 0.3 20 165-185 52-71 (72)
238 COG3589 Uncharacterized conser 23.0 7.5E+02 0.016 24.5 10.3 145 149-333 17-173 (360)
239 cd06831 PLPDE_III_ODC_like_AZI 22.9 7.7E+02 0.017 24.6 15.1 175 162-356 79-264 (394)
240 PLN02321 2-isopropylmalate syn 22.9 5.2E+02 0.011 27.9 9.4 85 144-232 202-297 (632)
241 cd01967 Nitrogenase_MoFe_alpha 22.9 4.9E+02 0.011 25.8 9.0 28 270-298 164-191 (406)
242 PRK11267 biopolymer transport 22.8 4.3E+02 0.0092 22.2 7.4 56 143-204 79-134 (141)
243 TIGR01430 aden_deam adenosine 22.8 6.8E+02 0.015 23.9 11.0 86 245-338 103-193 (324)
244 PF07002 Copine: Copine; Inte 22.7 3.4E+02 0.0073 23.3 6.7 66 133-208 52-120 (146)
245 PLN02635 disproportionating en 22.7 1.1E+02 0.0024 32.3 4.3 41 274-314 44-90 (538)
246 PF02113 Peptidase_S13: D-Ala- 22.7 1.2E+02 0.0027 31.0 4.6 42 164-205 82-123 (444)
247 PRK11024 colicin uptake protei 22.6 4.6E+02 0.01 22.0 7.5 56 144-205 84-139 (141)
248 PRK04147 N-acetylneuraminate l 22.6 6.6E+02 0.014 23.8 9.5 25 271-295 76-101 (293)
249 TIGR01278 DPOR_BchB light-inde 22.3 5.8E+02 0.013 26.5 9.6 63 278-340 173-243 (511)
250 cd03174 DRE_TIM_metallolyase D 22.0 5.2E+02 0.011 23.6 8.5 62 165-232 132-200 (265)
251 TIGR03249 KdgD 5-dehydro-4-deo 22.0 6.9E+02 0.015 23.7 15.4 126 144-287 22-153 (296)
252 TIGR02512 Fe_only_hydrog hydro 21.9 30 0.00065 34.5 -0.0 37 166-208 95-134 (374)
253 COG0816 Predicted endonuclease 21.7 3.3E+02 0.0072 23.3 6.3 59 281-343 41-101 (141)
254 PRK15063 isocitrate lyase; Pro 21.6 3.5E+02 0.0075 27.7 7.4 83 246-337 263-346 (428)
255 PF10911 DUF2717: Protein of u 21.6 64 0.0014 24.6 1.7 25 39-63 8-32 (77)
256 KOG2335 tRNA-dihydrouridine sy 21.6 6.5E+02 0.014 25.1 9.0 136 177-330 125-267 (358)
257 PRK14478 nitrogenase molybdenu 21.1 9.2E+02 0.02 24.8 11.2 72 269-341 194-273 (475)
258 TIGR02801 tolR TolR protein. T 20.9 4.7E+02 0.01 21.4 7.1 54 145-204 75-128 (129)
259 PTZ00124 adenosine deaminase; 20.8 8E+02 0.017 24.3 9.8 86 244-337 137-226 (362)
260 COG0648 Nfo Endonuclease IV [D 20.7 6.9E+02 0.015 24.0 8.9 107 246-355 119-228 (280)
261 PRK14508 4-alpha-glucanotransf 20.7 1.3E+02 0.0028 31.4 4.4 41 274-314 21-63 (497)
262 COG1625 Fe-S oxidoreductase, r 20.7 7.1E+02 0.015 25.3 9.3 133 125-266 83-254 (414)
263 PF10281 Ish1: Putative stress 20.6 1.1E+02 0.0023 19.8 2.4 18 9-26 4-21 (38)
264 cd01972 Nitrogenase_VnfE_like 20.4 4.8E+02 0.01 26.3 8.4 63 279-341 178-249 (426)
265 COG1707 ACT domain-containing 20.2 2.6E+02 0.0057 24.8 5.4 61 146-214 125-186 (218)
No 1
>PRK14461 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=100.00 E-value=1.1e-95 Score=706.76 Aligned_cols=332 Identities=37% Similarity=0.612 Sum_probs=318.2
Q ss_pred CCCCHHHHHHHHHHcCCCcchHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHHhcCCCCCcccceEEeCCCCCeEEEEEEe
Q 017203 7 SVFDGGIIRAEFEKAGIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHSVVDSSDDVTTKLLVKL 86 (375)
Q Consensus 7 ~~~~~~~l~~~~~~~g~~~~~~~qi~~~~~~~~~~~~~~~~~l~~~~r~~l~~~~~~~~~~~~~~~~s~dg~t~k~l~~~ 86 (375)
--++++||++++.++|+|+|||+|||+|+|++++.+|++|+||||++|++|++.|.+..+++.+.+.|.||.|+||||++
T Consensus 11 ~~l~~~el~~~~~~~g~~~fRa~Qi~~wiy~~~~~~~~~mtnlpk~lR~~L~~~~~i~~l~~~~~~~S~Dg~T~K~L~~l 90 (371)
T PRK14461 11 YDLNLAELTELLTAWGQPAFRARQLYRHLYVNLADSVLAMTDLPLALRERLTAELPLSTLRLEQVQIGDNGLTRKALFRL 90 (371)
T ss_pred ccCCHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCHHHccccCHHHHHHHhhccccCCcceEEEEECCCCCeEEEEEEc
Confidence 34679999999999999999999999999999999999999999999999999999999999999999999789999999
Q ss_pred cCCCeEEEEEeeecCCCCCCCCCCCCCCCceEEEEeecCCCCCcCccccCCCCCcccCCCHHHHHHHHHHhhhh------
Q 017203 87 QNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRL------ 160 (375)
Q Consensus 87 ~dg~~ve~v~i~~~~~~~~~~g~~~~~~~r~tl~vssq~GCnl~C~fC~~~~~~~~r~lt~~ei~~qi~~~~~~------ 160 (375)
+||..||||+||++ .|.|+|||||+||+|+|.||++|++|+.|||+++||++|+..+...
T Consensus 91 ~DG~~IEtVli~~~--------------~r~TlCvSSQvGC~mgC~FCaTG~~G~~RNLt~~EIv~Qv~~~~~~l~~~~~ 156 (371)
T PRK14461 91 PDGAVVETVLMIYP--------------DRATVCVSTQAGCGMGCVFCATGTLGLLRNLSSGEIVAQVIWASRELRAMGA 156 (371)
T ss_pred CCCCEEEEEEEecC--------------CCceEEEEccCCccCCCCcccCCCCCcccCCCHHHHHHHHHHHHHHhhhccc
Confidence 99999999999985 4799999999999999999999999999999999999999876432
Q ss_pred ----------CCcceEEEEeCCCcccCHHHHHHHHHHhhCC-CCCCCCCeEEEEeCCchhhHHHHhhhCCCceEEEEecC
Q 017203 161 ----------SNIRNVVFMGMGEPLNNYAALVEAVRIMTGL-PFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 229 (375)
Q Consensus 161 ----------~~i~~Ivf~GmGEPlln~~~l~~~i~~l~~~-g~~i~~~~itisTnG~~~~i~~l~~~~~~v~laiSL~a 229 (375)
.++++||||||||||+||+++.++++.+.+. |+++|.++|||||+|++|.|++|+++.+.+.|+|||||
T Consensus 157 ~~~~~~~~~~~~i~NIVfMGMGEPL~NydnV~~ai~il~d~~g~~is~R~ITVST~Givp~I~~la~~~~~v~LAiSLHA 236 (371)
T PRK14461 157 AISKRHAGPVGRVTNLVFMGMGEPFANYDRWWQAVERLHDPQGFNLGARSMTVSTVGLVKGIRRLANERLPINLAISLHA 236 (371)
T ss_pred ccccccccccCceeeEEEEccCCchhhHHHHHHHHHHhcCccccCcCCCceEEEeecchhHHHHHHhcccCceEEEEeCC
Confidence 2489999999999999999999999999998 99999999999999999999999998878999999999
Q ss_pred CCHHHHhhhcCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEEeeCCCCCCHHHHHHHHHHHhcC------CCEEEEeecCC
Q 017203 230 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETF------QVVVNLIPFNP 303 (375)
Q Consensus 230 ~~~~~r~~i~p~~~~~~~~~vl~~l~~~~~~~g~~v~i~~vli~gvND~~e~~~~L~~~l~~~------~~~vnLip~np 303 (375)
++++.|++|||+|++|+++++++++++|.++++++|+|||+|++|+||+++++++|+++++++ .++||||||||
T Consensus 237 ~~~e~R~~lmPin~~ypl~eLl~a~~~y~~~t~rrit~EYvLi~gvNDs~e~A~~L~~llk~~~~~~~l~~~VNLIp~Np 316 (371)
T PRK14461 237 PDDALRSELMPVNRRYPIADLMAATRDYIAKTRRRVSFEYVLLQGKNDHPEQAAALARLLRGEAPPGPLLVHVNLIPWNP 316 (371)
T ss_pred CCHHHHHHhcCcccCCCHHHHHHHHHHHHHhhCCEEEEEEEEECCCCCCHHHHHHHHHHHcCCccccCCceEEEEecCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999 89999999999
Q ss_pred CCCCCCCCCCcHHHHHHHHHHHHhcCCceEEeccCCCcchhcccchhhccc
Q 017203 304 IGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNL 354 (375)
Q Consensus 304 ~~~~~~~~~~s~e~i~~f~~~l~~~~Gi~v~vR~~~g~di~aaCGql~~~~ 354 (375)
+ ++.+|.+|+.+.+.+|+++|+ ++|+.|++|+++|+||+||||||+.++
T Consensus 317 ~-~~~~~~~ps~~~i~~F~~~L~-~~gi~vtiR~s~G~DI~AACGQL~~~~ 365 (371)
T PRK14461 317 V-PGTPLGRSERERVTTFQRILT-DYGIPCTVRVERGVEIAAACGQLAGRH 365 (371)
T ss_pred C-CCCCCCCCCHHHHHHHHHHHH-HCCceEEEeCCCCcChhhcCcccccCC
Confidence 8 578999999999999999999 799999999999999999999999876
No 2
>PRK14459 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=100.00 E-value=2.3e-88 Score=662.02 Aligned_cols=331 Identities=38% Similarity=0.588 Sum_probs=314.0
Q ss_pred CCCCHHHHHHHHHHcCCCcchHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHHhcCCCCCcccceEEeCCCCCeEEEEEEe
Q 017203 7 SVFDGGIIRAEFEKAGIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHSVVDSSDDVTTKLLVKL 86 (375)
Q Consensus 7 ~~~~~~~l~~~~~~~g~~~~~~~qi~~~~~~~~~~~~~~~~~l~~~~r~~l~~~~~~~~~~~~~~~~s~dg~t~k~l~~~ 86 (375)
--|+++||++++.++|+|+|||+|||+|+|++++.+|++|+|||+++|++|++.|.+..+++++.+.|.||+|+||||++
T Consensus 25 ~~l~~~el~~~~~~~g~~~~ra~Qi~~wiy~~~~~~~~~mt~l~k~~r~~L~~~~~~~~~~~~~~~~s~dg~t~K~l~~l 104 (373)
T PRK14459 25 ADLTPAERREAVAELGLPAFRAKQLARHYFGRLTADPAQMTDLPAAAREELAEALFPTLLTPVRTLEADDGTTRKTLWRL 104 (373)
T ss_pred ccCCHHHHHHHHHHcCCCcHHHHHHHHHHHhcCCCCHHHhcccCHHHHHHHHhhcccCCceEEEEEEcCCCCEEEEEEEc
Confidence 45779999999999999999999999999999999999999999999999999999999999999999999889999999
Q ss_pred cCCCeEEEEEeeecCCCCCCCCCCCCCCCceEEEEeecCCCCCcCccccCCCCCcccCCCHHHHHHHHHHhhhh------
Q 017203 87 QNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRL------ 160 (375)
Q Consensus 87 ~dg~~ve~v~i~~~~~~~~~~g~~~~~~~r~tl~vssq~GCnl~C~fC~~~~~~~~r~lt~~ei~~qi~~~~~~------ 160 (375)
.||..||||+||+. .|.|+|||||+||+|+|.||+++.+++.|+||++||++|+..+...
T Consensus 105 ~Dg~~iEtV~i~~~--------------~~~tlCvSsQvGC~m~C~FCatg~~g~~RnLt~~EIv~Qv~~~~~~~~~~~~ 170 (373)
T PRK14459 105 HDGTLVESVLMRYP--------------DRATLCISSQAGCGMACPFCATGQGGLTRNLSTAEIVEQVRAAARALRDGEV 170 (373)
T ss_pred CCCCEEEEEEEEEc--------------CCceEEEEecCCCCCcCCCCCCCCCCCCCccCHHHHHHHHHHHHHHhhhccc
Confidence 99999999999985 4799999999999999999999999999999999999999976532
Q ss_pred ----CCcceEEEEeCCCcccCHHHHHHHHHHhhC--C-CCCCCCCeEEEEeCCchhhHHHHhhhCCCceEEEEecCCCHH
Q 017203 161 ----SNIRNVVFMGMGEPLNNYAALVEAVRIMTG--L-PFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQD 233 (375)
Q Consensus 161 ----~~i~~Ivf~GmGEPlln~~~l~~~i~~l~~--~-g~~i~~~~itisTnG~~~~i~~l~~~~~~v~laiSL~a~~~~ 233 (375)
.++++|+||||||||+|++++.++++.+++ . |++++.++|||||+|+.+.+.+|++..+.+.|+|||||++++
T Consensus 171 ~~~~~~i~nVvfmGmGEPLlN~d~V~~~i~~l~~~~~~g~gis~r~ITvST~Gl~~~i~~la~~~l~~~LavSLha~d~e 250 (373)
T PRK14459 171 PGGPGRLSNVVFMGMGEPLANYKRVVAAVRRITAPAPEGLGISARNVTVSTVGLVPAIRKLADEGLPVTLAVSLHAPDDE 250 (373)
T ss_pred ccCCCceeEEEEecCCcchhhHHHHHHHHHHHhCcccccCCccCCEEEEECcCchhHHHHHHHhcCCeEEEEEeCCCCHH
Confidence 237899999999999999999999999998 4 899999999999999999999999987778899999999999
Q ss_pred HHhhhcCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEEeeCCCCCCHHHHHHHHHHHhcC---CCEEEEeecCCCCCCCCC
Q 017203 234 VRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETF---QVVVNLIPFNPIGSVSQF 310 (375)
Q Consensus 234 ~r~~i~p~~~~~~~~~vl~~l~~~~~~~g~~v~i~~vli~gvND~~e~~~~L~~~l~~~---~~~vnLip~np~~~~~~~ 310 (375)
.|+++||.|++|+++++++++++|.+++|++|+|+|+|++|+||+++++++|+++++++ .++||||||||.+ +..|
T Consensus 251 ~R~~l~p~n~~~~l~~ll~a~~~~~~~~grrv~ieyvLi~GvNDs~e~a~~L~~llk~~~~~~~~VNLIpyNp~~-~~~y 329 (373)
T PRK14459 251 LRDELVPVNTRWKVDEVLDAARYYADATGRRVSIEYALIRDINDQPWRADLLGKKLHGRGGGWVHVNLIPLNPTP-GSKW 329 (373)
T ss_pred HHHHhcCcccCCCHHHHHHHHHHHHHHhCCEEEEEEEEeCCCCCCHHHHHHHHHHHhhccCCCeEEEEEccCCCC-CCCC
Confidence 99999999999999999999999999999999999999999999999999999999999 6899999999994 6689
Q ss_pred CCCcHHHHHHHHHHHHhcCCceEEeccCCCcchhcccchhhcc
Q 017203 311 RTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVN 353 (375)
Q Consensus 311 ~~~s~e~i~~f~~~l~~~~Gi~v~vR~~~g~di~aaCGql~~~ 353 (375)
.+|+.+.+.+|+++|+ ++|+.|++|+++|+||+||||||+.+
T Consensus 330 ~~~~~~~~~~F~~~L~-~~gi~~tiR~~~G~dI~aACGQL~~~ 371 (373)
T PRK14459 330 TASPPEVEREFVRRLR-AAGVPCTVRDTRGQEIDGACGQLAAE 371 (373)
T ss_pred cCCCHHHHHHHHHHHH-HCCCeEEeeCCCCcCHhhcCCccccc
Confidence 9999999999999999 79999999999999999999999864
No 3
>PRK14465 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=100.00 E-value=1.4e-88 Score=658.02 Aligned_cols=331 Identities=33% Similarity=0.546 Sum_probs=314.5
Q ss_pred CCCCHHHHHHHHHHcCCCcchHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHHhcCCCCCcccceEEeCCCCCeEEEEEEe
Q 017203 7 SVFDGGIIRAEFEKAGIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHSVVDSSDDVTTKLLVKL 86 (375)
Q Consensus 7 ~~~~~~~l~~~~~~~g~~~~~~~qi~~~~~~~~~~~~~~~~~l~~~~r~~l~~~~~~~~~~~~~~~~s~dg~t~k~l~~~ 86 (375)
.-|+++||++++.++|+|+|||+|||+|||++++.+|++|+|||+++|++|++.|.+..+++.+.+.|.|| |+||||++
T Consensus 8 ~~~~~~~l~~~~~~~g~~~fra~Qi~~wiy~~~~~~~~~mt~l~~~~r~~L~~~~~~~~~~~~~~~~s~dg-t~K~l~~l 86 (342)
T PRK14465 8 KGRTLKELSEIMVSLGEKKFRAKQIYHGLYVNRYETWDQFTTFSKEVKEKLEELCSLTELEVVKDLKSVDG-TQKFTFYS 86 (342)
T ss_pred ccCCHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCHHHhccccHHHHHHHhcccccCCccEEEEEEcCCC-cEEEEEEc
Confidence 34779999999999999999999999999999999999999999999999999999999999999999999 89999999
Q ss_pred cCCCeEEEEEeeecCCCCCCCCCCCCCCCceEEEEeecCCCCCcCccccCCCCCcccCCCHHHHHHHHHHhhhh--CCcc
Q 017203 87 QNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRL--SNIR 164 (375)
Q Consensus 87 ~dg~~ve~v~i~~~~~~~~~~g~~~~~~~r~tl~vssq~GCnl~C~fC~~~~~~~~r~lt~~ei~~qi~~~~~~--~~i~ 164 (375)
+||..||||+||+.+ +.|.|+|||||+||||+|.||+++++++.++++++||++|+..+... .++.
T Consensus 87 ~Dg~~iEtV~i~~~~------------~~~~t~CvSsQvGC~m~C~FC~tg~~g~~rnlta~EI~~qv~~~~~~~~~~~~ 154 (342)
T PRK14465 87 GEGKEFEAVWIPSGD------------GGRKTICISSQIGCTLNCKFCATAKLEFQGNLKAHEIVDQVLQVEKIVGDRAT 154 (342)
T ss_pred CCCCEEEEEEeEecC------------CCceEEEEEecCCCCCCCCCCcCCCCCccCCCCHHHHHHHHHHHHHhcCCCce
Confidence 999999999999852 36899999999999999999999999999999999999999887642 3589
Q ss_pred eEEEEeCCCcccCHHHHHHHHHHhhCC-CCCCCCCeEEEEeCCchhhHHHHhhhCCCceEEEEecCCCHHHHhhhcCCCC
Q 017203 165 NVVFMGMGEPLNNYAALVEAVRIMTGL-PFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAAR 243 (375)
Q Consensus 165 ~Ivf~GmGEPlln~~~l~~~i~~l~~~-g~~i~~~~itisTnG~~~~i~~l~~~~~~v~laiSL~a~~~~~r~~i~p~~~ 243 (375)
+||||||||||+|+++|.++++.+++. +++++.++|+|||||+++.+.+|++....+.|+|||||++++.|.++||+++
T Consensus 155 niVFmGmGEPL~N~d~V~~~~~~l~~~~~~~~~~r~itvST~G~~~~i~~l~~~~~~~~LaiSLhA~~~e~R~~l~Pi~~ 234 (342)
T PRK14465 155 NVVFMGMGEPMHNYFNVIRAASILHDPDAFNLGAKRITISTSGVVNGIRRFIENKEPYNFAISLNHPDPNGRLQIMDIEE 234 (342)
T ss_pred EEEEEcCCcchhhHHHHHHHHHHHhChhhhcCCCCeEEEeCCCchHHHHHHHhhccCceEEEEecCCChhhcceEeeccc
Confidence 999999999999999999999999997 9999999999999999999999997655689999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhcCCcEEEEEEeeCCCCCCHHHHHHHHHHHhcCCCEEEEeecCCCCCCCCCCCCcHHHHHHHHH
Q 017203 244 AFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQK 323 (375)
Q Consensus 244 ~~~~~~vl~~l~~~~~~~g~~v~i~~vli~gvND~~e~~~~L~~~l~~~~~~vnLip~np~~~~~~~~~~s~e~i~~f~~ 323 (375)
++++++++++++.|.++++++++++|+|+||+||+++++++|++++++++++||||||||. +.+|++|+.+++++|++
T Consensus 235 ~~~le~ll~al~~~~~~~~r~v~ieyvLI~GvNDs~eda~~L~~ll~~l~~kVnLIPyN~~--~~~~~~ps~e~i~~F~~ 312 (342)
T PRK14465 235 KFPLEELLQAAKDFTRELKRRITFEYVMIPGVNMGRENANKLVKIARSLDCKINVIPLNTE--FFGWRRPTDDEVAEFIM 312 (342)
T ss_pred cCCHHHHHHHHHHHHHHcCCEEEEEEEEECCccCCHHHHHHHHHHHhhCCCcEEEEccCCC--CCCCCCCCHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999996 46899999999999999
Q ss_pred HHHhcCCceEEeccCCCcchhcccchhhcc
Q 017203 324 ILRGSYNIRTTVRKQMGQDISGACGQLVVN 353 (375)
Q Consensus 324 ~l~~~~Gi~v~vR~~~g~di~aaCGql~~~ 353 (375)
+|+ ++|+.|++|+++|.||+||||||+.+
T Consensus 313 ~L~-~~Gi~v~~R~~~G~di~aACGqL~~~ 341 (342)
T PRK14465 313 LLE-PAGVPILNRRSPGKDIFGACGMLASK 341 (342)
T ss_pred HHH-HCCCeEEEeCCCCcChhhcCCccccC
Confidence 999 79999999999999999999999874
No 4
>PRK14466 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=100.00 E-value=4.5e-88 Score=653.06 Aligned_cols=339 Identities=34% Similarity=0.547 Sum_probs=318.5
Q ss_pred CCCCCCCCCCHHHHHHHHHHcCCCcchHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHHhcCCCCCcccceEEeCCCCCeE
Q 017203 1 MTYDYRSVFDGGIIRAEFEKAGIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHSVVDSSDDVTT 80 (375)
Q Consensus 1 ~~~~~~~~~~~~~l~~~~~~~g~~~~~~~qi~~~~~~~~~~~~~~~~~l~~~~r~~l~~~~~~~~~~~~~~~~s~dg~t~ 80 (375)
|+.....-++++||++++.++|+|+|||+|||+|+|++++.+|++|+|||+++|++|++.|.+..+++.+.+.|.|| |+
T Consensus 2 ~~~~~l~~l~~~el~~~~~~~g~~~fra~Qi~~wi~~~~~~~~~~mt~l~~~~r~~L~~~~~~~~~~~~~~~~s~dg-t~ 80 (345)
T PRK14466 2 MPKYPLLGMTLEELQSVAKRLGMPAFAAKQIASWLYDKKVTSIDEMTNISLAHREKLAEEYEIGAYAPVDEQRSVDG-TI 80 (345)
T ss_pred CCCcCcccCCHHHHHHHHHHcCCCchHHHHHHHHHHhcCCCCHHHHhhhhHHHHHhhcCCeEecCceEEEEEEcCCC-eE
Confidence 33433455779999999999999999999999999999999999999999999999999999999999999999999 89
Q ss_pred EEEEEecCCCeEEEEEeeecCCCCCCCCCCCCCCCceEEEEeecCCCCCcCccccCCCCCcccCCCHHHHHHHHHHhhhh
Q 017203 81 KLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRL 160 (375)
Q Consensus 81 k~l~~~~dg~~ve~v~i~~~~~~~~~~g~~~~~~~r~tl~vssq~GCnl~C~fC~~~~~~~~r~lt~~ei~~qi~~~~~~ 160 (375)
||||++.||..||||+||+. .|+|+|||||+|||++|.||+++..++.+++|++||++|+..+...
T Consensus 81 K~l~~l~dg~~iEsVlip~~--------------~r~t~cvSsQvGC~~~C~FC~Tg~~g~~rnLt~~EIl~Qv~~~~~~ 146 (345)
T PRK14466 81 KYLFPVGEGHFVESVYIPEE--------------DRATLCVSSQVGCKMNCLFCMTGKQGFTGNLTAAQILNQIYSLPER 146 (345)
T ss_pred EEEEEcCCCCEEEEEEEecC--------------CceEEEEEcCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHhhhhc
Confidence 99999999999999999874 5799999999999999999999999999999999999999987543
Q ss_pred CCcceEEEEeCCCcccCHHHHHHHHHHhhCC-CCCCCCCeEEEEeCCchhhHHHHhhhCCCceEEEEecCCCHHHHhhhc
Q 017203 161 SNIRNVVFMGMGEPLNNYAALVEAVRIMTGL-PFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIM 239 (375)
Q Consensus 161 ~~i~~Ivf~GmGEPlln~~~l~~~i~~l~~~-g~~i~~~~itisTnG~~~~i~~l~~~~~~v~laiSL~a~~~~~r~~i~ 239 (375)
.++++|+||||||||+|+++++++++.+++. |++++.++|+|+|||+.|.+.++++.. .+.|++||||++++.|++||
T Consensus 147 ~~i~nIvfmGmGEPL~N~d~vi~al~~l~~~~g~~~s~r~ItVsT~G~~~~i~~l~~~~-~~~LavSLha~~~e~R~~i~ 225 (345)
T PRK14466 147 DKLTNLVFMGMGEPLDNLDEVLKALEILTAPYGYGWSPKRITVSTVGLKKGLKRFLEES-ECHLAISLHSPFPEQRRELM 225 (345)
T ss_pred CCCCeEEEeeeCcCcccHHHHHHHHHHHhhccccCcCCceEEEEcCCCchHHHHHhhcc-CcEEEEEcCCCCHHHHHHhc
Confidence 4689999999999999999999999999988 999999999999999998899988765 58899999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHhcCCcEEEEEEeeCCCCCCHHHHHHHHHHHhcCCCEEEEeecCCCCCCCCCCCCcHHHHH
Q 017203 240 PAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVS 319 (375)
Q Consensus 240 p~~~~~~~~~vl~~l~~~~~~~g~~v~i~~vli~gvND~~e~~~~L~~~l~~~~~~vnLip~np~~~~~~~~~~s~e~i~ 319 (375)
|++++|+++++++++++|.++++++|+++|+|++|+||+++++.+|++++++++++||||||||. ++.+|++|+.+.++
T Consensus 226 P~~~~~~l~~l~~al~~y~~~~~rri~~Ey~Li~gvND~~e~a~~L~~ll~~~~~~VNLIp~Np~-~~~~~~~~s~~~~~ 304 (345)
T PRK14466 226 PAEKAFSIKEIIDLLKNYDFSKQRRVSFEYIVFKGLNDSLKHAKELVKLLRGIDCRVNLIRFHAI-PGVDLEGSDMARME 304 (345)
T ss_pred CCccCCCHHHHHHHHHHHHHhhCCEEEEEEEEeCCCCCCHHHHHHHHHHHcCCCceEEEEecCCC-CCCCCcCCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999998 46789999999999
Q ss_pred HHHHHHHhcCCceEEeccCCCcchhcccchhhccccCc
Q 017203 320 SFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDK 357 (375)
Q Consensus 320 ~f~~~l~~~~Gi~v~vR~~~g~di~aaCGql~~~~~~~ 357 (375)
+|+++|+ ++|+.|++|+++|+||+||||||+.+...+
T Consensus 305 ~F~~~L~-~~gi~~tvR~s~G~dI~aACGQL~~~~~~~ 341 (345)
T PRK14466 305 AFRDYLT-SHGVFTTIRASRGEDIFAACGMLSTAKQEE 341 (345)
T ss_pred HHHHHHH-HCCCcEEEeCCCCCchhhcCccchhhhhhh
Confidence 9999999 799999999999999999999999876543
No 5
>COG0820 Predicted Fe-S-cluster redox enzyme [General function prediction only]
Probab=100.00 E-value=2.6e-88 Score=646.61 Aligned_cols=331 Identities=40% Similarity=0.670 Sum_probs=316.4
Q ss_pred CCHHHHHHHHHHcCCCcchHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHHhcCCCCCcccceEEeCCCCCeEEEEEE-ec
Q 017203 9 FDGGIIRAEFEKAGIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHSVVDSSDDVTTKLLVK-LQ 87 (375)
Q Consensus 9 ~~~~~l~~~~~~~g~~~~~~~qi~~~~~~~~~~~~~~~~~l~~~~r~~l~~~~~~~~~~~~~~~~s~dg~t~k~l~~-~~ 87 (375)
++.+++++++.++|+|+|||+|||+|+|++++.+|++|+||||.+|++|++.|.+..++++..+.|+|| |+||+|+ +.
T Consensus 7 l~~~~~~~~~~~~g~~~fra~Qi~~W~y~~~~~~f~~Mtnl~k~~r~~L~~~~~~~~~~~~~~~~s~dG-T~K~l~~~l~ 85 (349)
T COG0820 7 LTRAELAEWLAELGLKKFRAKQLFKWIYQKGVDDFDEMTDLSKGLRAKLKEAFFINLLKVVEVQESSDG-TIKWLFEVLP 85 (349)
T ss_pred cCHHHHHHHHHhcCccchHHHHHHHHHHHHhccCHHHhccccHHHHHHHHHhhccccceEEEEEEcCCC-CEEEEEEEcC
Confidence 457889999999999999999999999999999999999999999999999999999999999999999 9999999 99
Q ss_pred CCCeEEEEEeeecCCCCCCCCCCCCCCCceEEEEeecCCCCCcCccccCCCCCcccCCCHHHHHHHHHHhhhh------C
Q 017203 88 NGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRL------S 161 (375)
Q Consensus 88 dg~~ve~v~i~~~~~~~~~~g~~~~~~~r~tl~vssq~GCnl~C~fC~~~~~~~~r~lt~~ei~~qi~~~~~~------~ 161 (375)
||..||||+||+. .++|+|||||+||+++|.||++++.|+.|+|+++||++|++.+.+. .
T Consensus 86 dg~~iEtV~ip~~--------------~r~tlCVSsQvGC~~~C~FCaTg~~G~~RNLs~~EIv~Qv~~~~~~~~~~~~~ 151 (349)
T COG0820 86 DGTMIETVLIPEK--------------DRNTLCVSSQVGCPVGCTFCATGQGGLNRNLSAGEIVEQVLLAAKALGEDFGR 151 (349)
T ss_pred CCCEEEEEEEEec--------------CCceEEEecCCCcCCCCCeeccccccceeccCHHHHHHHHHHHHHhcCccccc
Confidence 9999999999986 5799999999999999999999999999999999999999986532 2
Q ss_pred CcceEEEEeCCCcccCHHHHHHHHHHhhCC-CCCCCCCeEEEEeCCchhhHHHHhhhCCCceEEEEecCCCHHHHhhhcC
Q 017203 162 NIRNVVFMGMGEPLNNYAALVEAVRIMTGL-PFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMP 240 (375)
Q Consensus 162 ~i~~Ivf~GmGEPlln~~~l~~~i~~l~~~-g~~i~~~~itisTnG~~~~i~~l~~~~~~v~laiSL~a~~~~~r~~i~p 240 (375)
++.+||||||||||+|++++..+++.+.+. |+++++++||+||+|+.|.|.+|++....+.|+|||||+++++|+++||
T Consensus 152 ~i~NVV~MGMGEPl~N~dnV~~a~~i~~~~~G~~ls~R~iTvSTsGi~~~I~~l~~~~~~v~LAiSLHa~nd~lR~~L~P 231 (349)
T COG0820 152 RISNVVFMGMGEPLLNLDNVVKALEIINDDEGLGLSKRRITVSTSGIVPRIRKLADEQLGVALAISLHAPNDELRDQLMP 231 (349)
T ss_pred eeeeEEEecCCchhhhHHHHHHHHHhhcCcccccccceEEEEecCCCchhHHHHHhhcCCeEEEEecCCCCHHHHhhhhc
Confidence 489999999999999999999999999987 9999999999999999999999997666799999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCcEEEEEEeeCCCCCCHHHHHHHHHHHhcCCCEEEEeecCCCCCCCCCCCCcHHHHHH
Q 017203 241 AARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSS 320 (375)
Q Consensus 241 ~~~~~~~~~vl~~l~~~~~~~g~~v~i~~vli~gvND~~e~~~~L~~~l~~~~~~vnLip~np~~~~~~~~~~s~e~i~~ 320 (375)
.|++|++++++++++.|...++++|++||+|++||||+.+++++|+++++++.++||||||||. ++.+|..|+.+++.+
T Consensus 232 ink~~~~e~l~~a~r~Y~~~t~~rVt~EY~Ll~~VND~~e~A~~L~~ll~~~~~~VNLIP~Np~-~~~~y~r~~~~~i~~ 310 (349)
T COG0820 232 INKKYPIEELLEAIRYYPEKSGRRVTFEYVLLDGVNDSLEHAKELAKLLKGIPCKVNLIPYNPV-PGSDYERSSKERIRK 310 (349)
T ss_pred cccCCCHHHHHHHHHhhhhccCceEEEEeeecccccCCHHHHHHHHHHhcCCCceEEEeecCCC-CCCCccCCcHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999 678899999999999
Q ss_pred HHHHHHhcCCceEEeccCCCcchhcccchhhccccC
Q 017203 321 FQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPD 356 (375)
Q Consensus 321 f~~~l~~~~Gi~v~vR~~~g~di~aaCGql~~~~~~ 356 (375)
|.++|. ++|+.++||.++|.||+||||||+.+...
T Consensus 311 F~~~L~-~~gv~~tvR~~~g~DIdaACGQL~~~~~~ 345 (349)
T COG0820 311 FLKILK-KAGVLVTVRKTRGDDIDAACGQLRGKRIK 345 (349)
T ss_pred HHHHHH-hCCeeEEeccccccccccccchhhhhhch
Confidence 999999 79999999999999999999999988643
No 6
>PRK14462 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=100.00 E-value=2e-86 Score=646.20 Aligned_cols=342 Identities=33% Similarity=0.550 Sum_probs=317.2
Q ss_pred CCCCHHHHHHHHHHcCCCcchHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHHhcCCCCCcccceEEeCCCCCeEEEEEEe
Q 017203 7 SVFDGGIIRAEFEKAGIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHSVVDSSDDVTTKLLVKL 86 (375)
Q Consensus 7 ~~~~~~~l~~~~~~~g~~~~~~~qi~~~~~~~~~~~~~~~~~l~~~~r~~l~~~~~~~~~~~~~~~~s~dg~t~k~l~~~ 86 (375)
.-++++||++++ .|+|||+|||+|||++++.+|++|+|||+++|+.|++.|.+..+++++.+.|.|| |+||||++
T Consensus 6 ~~~~~~el~~~~----~~~~ra~qi~~~~~~~~~~~~~~mt~l~~~~r~~L~~~~~~~~~~~~~~~~s~dg-t~K~l~~l 80 (356)
T PRK14462 6 YDFTLEELSELL----KPSFRAKQIYQWLYAKYATSFDDMKNLPKDLREYLAQEFTLDPLKIVKVEQSKDG-SKKYLFKL 80 (356)
T ss_pred ccCCHHHHHHHh----ccchHHHHHHHHHHhcCCCCHHHhccccHHHHHHHhhccccCCcceEEEEEcCCC-eEEEEEEc
Confidence 457799999999 4999999999999999999999999999999999999999999999999999999 89999999
Q ss_pred cCCCeEEEEEeeecCCCCCCCCCCCCCCCceEEEEeecCCCCCcCccccCCCCCcccCCCHHHHHHHHHHhhhh-----C
Q 017203 87 QNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRL-----S 161 (375)
Q Consensus 87 ~dg~~ve~v~i~~~~~~~~~~g~~~~~~~r~tl~vssq~GCnl~C~fC~~~~~~~~r~lt~~ei~~qi~~~~~~-----~ 161 (375)
+||..||||+||+.++....+|. .+.+.|.|+|+|||+||+++|.||+++.+++.|++|++||++|+..+... .
T Consensus 81 ~Dg~~iEtV~i~~~~~~~~~~~~-~~~~~r~t~CvSsQvGC~~~C~FCatg~~g~~RnLt~~EIv~QV~~~~~~~~~~~~ 159 (356)
T PRK14462 81 RDGHTVEAVLLKMKDEKIDEEGK-ILEHAKYTVCVSSQVGCKVGCAFCLTAKGGFVRNLSAGEIVGQILWIKKDNNIPYE 159 (356)
T ss_pred CCCCEEEEEEeeccccccccccc-cccCCCceEeeeccccCCCCCccCCCCCCCCcccCCHHHHHHHHHHHHHhhhcccc
Confidence 99999999999986544433432 34567899999999999999999999999999999999999999976543 2
Q ss_pred CcceEEEEeCCCcccCHHHHHHHHHHhhCC-CCCCCCCeEEEEeCCchhhHHHHhhhCCCceEEEEecCCCHHHHhhhcC
Q 017203 162 NIRNVVFMGMGEPLNNYAALVEAVRIMTGL-PFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMP 240 (375)
Q Consensus 162 ~i~~Ivf~GmGEPlln~~~l~~~i~~l~~~-g~~i~~~~itisTnG~~~~i~~l~~~~~~v~laiSL~a~~~~~r~~i~p 240 (375)
++.+||||||||||+|++++.++++.+++. |+++|+++|+|+|+|+.+.+++|++..+.+.|+||||+++++.|+++||
T Consensus 160 ~~~~vVfmGmGEPL~N~d~v~~~l~~l~~~~Gl~~~~r~itVsTsG~~~~i~~L~~~dl~v~LaiSLha~d~e~r~~l~p 239 (356)
T PRK14462 160 KRVNIVYMGMGEPLDNLDNVSKAIKIFSENDGLAISPRRQTISTSGLASKIKKLGEMNLGVQLAISLHAVDDELRSELMP 239 (356)
T ss_pred ccCCeEEeCCcccccCHHHHHHHHHHhcCccCCCcCCCceEEECCCChHHHHHHHhcCCCeEEEEECCCCCHHHHHHhCC
Confidence 368999999999999999999999999996 9999999999999999999999998755688999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCcEEEEEEeeCCCCCCHHHHHHHHHHHhcCCCEEEEeecCCCCCCCCCCCCcHHHHHH
Q 017203 241 AARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSS 320 (375)
Q Consensus 241 ~~~~~~~~~vl~~l~~~~~~~g~~v~i~~vli~gvND~~e~~~~L~~~l~~~~~~vnLip~np~~~~~~~~~~s~e~i~~ 320 (375)
++++|++++++++++.|..+++++|+|+|+||||+||+++++++|++++++++++||||||||. ++.+|++|+.+.+++
T Consensus 240 v~~~~~l~~ll~~l~~y~~~~~~~i~ieyvLI~GvNDs~e~a~~La~llk~l~~~VnLIPyn~~-~~~~~~~ps~e~i~~ 318 (356)
T PRK14462 240 INKAYNIESIIDAVRKFPIDQRKRVMFEYLVIKDVNDDLKSAKKLVKLLNGIKAKVNLILFNPH-EGSKFERPSLEDMIK 318 (356)
T ss_pred CCccCCHHHHHHHHHHHHHHhCCeEEEEEEEECCCCCCHHHHHHHHHHHhhcCcEEEEEeCCCC-CCCCCCCCCHHHHHH
Confidence 9999999999999998998999999999999999999999999999999999999999999998 477999999999999
Q ss_pred HHHHHHhcCCceEEeccCCCcchhcccchhhccccC
Q 017203 321 FQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPD 356 (375)
Q Consensus 321 f~~~l~~~~Gi~v~vR~~~g~di~aaCGql~~~~~~ 356 (375)
|+++|+ .+|+.|++|+++|+||+||||||+.+...
T Consensus 319 f~~~l~-~~gi~vtvR~~~G~dI~aACGQL~~~~~~ 353 (356)
T PRK14462 319 FQDYLN-SKGLLCTIRESKGLDISAACGQLREKKLS 353 (356)
T ss_pred HHHHHH-HCCCcEEEeCCCCCchhhcCccchhhhcc
Confidence 999999 79999999999999999999999987654
No 7
>PRK14467 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=100.00 E-value=3.7e-86 Score=644.41 Aligned_cols=331 Identities=39% Similarity=0.616 Sum_probs=311.3
Q ss_pred CCCCCHHHHHHHHHHcCCCcchHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHHhcCCCCCcccceEEeCCCCCeEEEEEE
Q 017203 6 RSVFDGGIIRAEFEKAGIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHSVVDSSDDVTTKLLVK 85 (375)
Q Consensus 6 ~~~~~~~~l~~~~~~~g~~~~~~~qi~~~~~~~~~~~~~~~~~l~~~~r~~l~~~~~~~~~~~~~~~~s~dg~t~k~l~~ 85 (375)
.--++++||++++.++|+|+|||+|||+|+|++++.+|++|+|||+++|+.|++.|.+..+++. .+.|.|| |+||||+
T Consensus 4 l~~~~~~~l~~~~~~~g~~~~r~~qi~~~~~~~~~~~~~~m~~l~~~~r~~l~~~~~~~~~~~~-~~~~~dg-t~K~l~~ 81 (348)
T PRK14467 4 IKNYNLEELEEFVVELGWEKYRAKQIAKWVYKKKVTDFDEMTDLSKEDRQLLKENFEFHTLELL-DRVEADD-SVKYLFK 81 (348)
T ss_pred cccCCHHHHHHHHHHcCCCchHHHHHHHHHHhcCCCCHHHhccccHHHHHHHhcCcccCCceee-EEEcCCC-eEEEEEE
Confidence 3457899999999999999999999999999999999999999999999999999999999998 6677899 9999999
Q ss_pred ecCCCeEEEEEeeecCCCCCCCCCCCCCCCceEEEEeecCCCCCcCccccCCCCCcccCCCHHHHHHHHHHhhhh---CC
Q 017203 86 LQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRL---SN 162 (375)
Q Consensus 86 ~~dg~~ve~v~i~~~~~~~~~~g~~~~~~~r~tl~vssq~GCnl~C~fC~~~~~~~~r~lt~~ei~~qi~~~~~~---~~ 162 (375)
+.||..||||+||+. .|.|+|||||+||+++|.||+++.+|+.|++|++||++|+..+..+ .+
T Consensus 82 ~~dg~~vE~V~i~~~--------------~~~t~cvSsq~GC~l~C~FC~t~~~G~~rnlt~~EIv~Qv~~~~~~~~~~~ 147 (348)
T PRK14467 82 TKDGHTIETVLIKER--------------DHLTLCVSSQVGCAVGCKFCATAKDGLIRNLRTAEIIDQYIQVQKFLGENR 147 (348)
T ss_pred cCCCCEEEEEEEEeC--------------CCcEEEEEcCCCCCCcCcCCCCCCCCCcCCCCHHHHHHHHHHHHHHhccCC
Confidence 999999999999975 4799999999999999999999999999999999999999987653 25
Q ss_pred cceEEEEeCCCcccCHHHHHHHHHHhhCC-CCCCCCCeEEEEeCCchhhHHHHhhhC--CCceEEEEecCCCHHHHhhhc
Q 017203 163 IRNVVFMGMGEPLNNYAALVEAVRIMTGL-PFQVSPKRITVSTVGIVHAINKFHSDL--PGLNLAVSLHAPVQDVRCQIM 239 (375)
Q Consensus 163 i~~Ivf~GmGEPlln~~~l~~~i~~l~~~-g~~i~~~~itisTnG~~~~i~~l~~~~--~~v~laiSL~a~~~~~r~~i~ 239 (375)
+.+||||||||||+|++++.++++.+++. |++++.++++|||||+.+.+.+++.+. +.++|++|||+++++.|+++|
T Consensus 148 v~~VvfmGmGEPL~N~d~v~~~l~~l~~~~gl~~~~r~itvsT~G~~~~i~~l~~~~~l~~v~LalSLha~~~e~r~~i~ 227 (348)
T PRK14467 148 IRNVVFMGMGEPLANYENVRKAVQIMTSPWGLDLSKRRITISTSGIIHQIKRMAEDPVMPEVNLAVSLNASSQKLRERIM 227 (348)
T ss_pred CCeEEEEccChhhcCHHHHHHHHHHHcChhccCcCCCcEEEECCCChhHHHHHHhhccccCeeEEEECCCCCHHHHHHhc
Confidence 79999999999999999999999999986 999999999999999999888888654 578999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHhcCCcEEEEEEeeCCCCCCHHHHHHHHHHHhcCC--CEEEEeecCCCCCCCCCCCCcHHH
Q 017203 240 PAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQ--VVVNLIPFNPIGSVSQFRTSSDDK 317 (375)
Q Consensus 240 p~~~~~~~~~vl~~l~~~~~~~g~~v~i~~vli~gvND~~e~~~~L~~~l~~~~--~~vnLip~np~~~~~~~~~~s~e~ 317 (375)
|.+++++++.+++++++|..+++++|+++|+|+||+||+++++++|++++++++ ++||||||||. +..+|++|+.++
T Consensus 228 p~~~~~~l~~l~~~~~~~~~~~g~~V~ieyvLIpGvNDs~e~a~~La~~l~~l~~~~~VnLIPynp~-~~~~~~~ps~e~ 306 (348)
T PRK14467 228 PISKTNTLEELMEVLKQYPLPPGRRIMLEYVLIKGVNDSPEDALRLAQLIGKNKKKFKVNLIPFNPD-PELPYERPELER 306 (348)
T ss_pred CCccccCHHHHHHHHHHHHHhcCCeEEEEEEEECCccCCHHHHHHHHHHHhcCCCceEEEEecCCCC-CCCCCCCCCHHH
Confidence 999999999999999999989999999999999999999999999999999975 68999999998 578999999999
Q ss_pred HHHHHHHHHhcCCceEEeccCCCcchhcccchhhccc
Q 017203 318 VSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNL 354 (375)
Q Consensus 318 i~~f~~~l~~~~Gi~v~vR~~~g~di~aaCGql~~~~ 354 (375)
+++|+++|+ ++|+.|++|+++|+||+||||||+.+.
T Consensus 307 i~~f~~~L~-~~gi~v~vR~~~G~di~aaCGqL~~~~ 342 (348)
T PRK14467 307 VYKFQKILW-DNGISTFVRWSKGVDIFGACGQLRKKR 342 (348)
T ss_pred HHHHHHHHH-HCCCcEEEeCCCCcchhhcccchhHhh
Confidence 999999999 799999999999999999999998764
No 8
>PRK14457 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=100.00 E-value=1e-85 Score=641.27 Aligned_cols=335 Identities=34% Similarity=0.534 Sum_probs=314.7
Q ss_pred CCCCCCCCHHHHHHHHHHcCCCcchHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHHh-cCCCCCcccceEEeCCCCCeEE
Q 017203 3 YDYRSVFDGGIIRAEFEKAGIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRS-KFKPLTSTLHSVVDSSDDVTTK 81 (375)
Q Consensus 3 ~~~~~~~~~~~l~~~~~~~g~~~~~~~qi~~~~~~~~~~~~~~~~~l~~~~r~~l~~-~~~~~~~~~~~~~~s~dg~t~k 81 (375)
||..--++++||++++.++|+|+|||+|||+|+|++++.+|++|+|||+++|+.|++ .|.+..+++++.+.|.|| |+|
T Consensus 1 ~~~~~~~~~~~l~~~~~~~g~~~~r~~qi~~w~~~~~~~~~~~m~~l~~~~r~~l~~~~~~~~~~~~~~~~~s~dg-t~K 79 (345)
T PRK14457 1 MKPLLGRSLAELEDWAVAQGQPAFRGRQLHDWLYNKGVRSLDEISVLPKAWRESLKDDGVPIGRLTIVERSVAPDG-TLK 79 (345)
T ss_pred CCccccCCHHHHHHHHHHcCCCchHHHHHHHHHHhcCCCCHHHcCccCHHHHHHHhhcCccccCceEEEEEEcCCC-cEE
Confidence 444566889999999999999999999999999999999999999999999999999 699999999999999999 899
Q ss_pred EEEEecCCCeEEEEEeeecCCCCCCCCCCCCCCCceEEEEeecCCCCCcCccccCCCCCcccCCCHHHHHHHHHHhhhh-
Q 017203 82 LLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRL- 160 (375)
Q Consensus 82 ~l~~~~dg~~ve~v~i~~~~~~~~~~g~~~~~~~r~tl~vssq~GCnl~C~fC~~~~~~~~r~lt~~ei~~qi~~~~~~- 160 (375)
|||++.||..||||+||+. .|+|+|||||+|||++|.||+++..++.++++++||++|+..+...
T Consensus 80 ~l~~l~dg~~iE~v~~~~~--------------~r~t~cvSsqvGC~~~C~FC~tg~~g~~rnlt~~EIv~qv~~~~~~~ 145 (345)
T PRK14457 80 LLLSTEDGEIIETVGIPTE--------------KRLTVCVSSQVGCPMACDFCATGKGGLKRSLKAHEIVDQVLTVQEDM 145 (345)
T ss_pred EEEEcCCCCEEEEEEEEcC--------------CCCEEEEeCCCCCCCcCCcCCCCCCCCccccCHHHHHHHHHHHHHHh
Confidence 9999999999999999874 5799999999999999999999999999999999999999987653
Q ss_pred -CCcceEEEEeCCCcccCHHHHHHHHHHhhCCCCCCCCCeEEEEeCCchhhHHHHhhhC------CCceEEEEecCCCHH
Q 017203 161 -SNIRNVVFMGMGEPLNNYAALVEAVRIMTGLPFQVSPKRITVSTVGIVHAINKFHSDL------PGLNLAVSLHAPVQD 233 (375)
Q Consensus 161 -~~i~~Ivf~GmGEPlln~~~l~~~i~~l~~~g~~i~~~~itisTnG~~~~i~~l~~~~------~~v~laiSL~a~~~~ 233 (375)
..+++|+||||||||+|++++.++++.+++. ++++.++|+|||+|..+.+++|++.. +.+.|++||||++++
T Consensus 146 ~~~~~~IvfmGmGEPlln~~~v~~~i~~l~~~-~~i~~r~itvST~G~~~~i~~L~~~~~~~~~~~~~~laiSLha~~~e 224 (345)
T PRK14457 146 QRRVSHVVFMGMGEPLLNIDEVLAAIRCLNQD-LGIGQRRITVSTVGVPKTIPQLAELAFQRLGRLQFTLAVSLHAPNQK 224 (345)
T ss_pred cCCCCEEEEEecCccccCHHHHHHHHHHHhcc-cCCccCceEEECCCchhhHHHHHhhhhhhcccCceEEEEEeCCCCHH
Confidence 3589999999999999999999999999876 56888999999999999999999865 457899999999999
Q ss_pred HHhhhcCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEEeeCCCCCCHHHHHHHHHHHhcCCCEEEEeecCCCCCCCCCCCC
Q 017203 234 VRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTS 313 (375)
Q Consensus 234 ~r~~i~p~~~~~~~~~vl~~l~~~~~~~g~~v~i~~vli~gvND~~e~~~~L~~~l~~~~~~vnLip~np~~~~~~~~~~ 313 (375)
.|+++||++++++++++++++++|+.+++++|++||+||||+||+++++++|++|+++++++||||||||.+ ..+|++|
T Consensus 225 ~r~~i~p~~~~~~l~~l~~~~~~y~~~~gr~I~iey~LIpGvNDs~e~a~~La~~l~~l~~~VnLIPynp~~-~~~~~~p 303 (345)
T PRK14457 225 LRETLIPSAKNYPIENLLEDCRHYVAITGRRVSFEYILLGGVNDLPEHAEELANLLRGFQSHVNLIPYNPID-EVEFQRP 303 (345)
T ss_pred HHHHhcCCccCCCHHHHHHHHHHHHHHhCCEEEEEEEEECCcCCCHHHHHHHHHHHhcCCCeEEEecCCCCC-CCCCCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999994 6789999
Q ss_pred cHHHHHHHHHHHHhcCCceEEeccCCCcchhcccchhhcccc
Q 017203 314 SDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLP 355 (375)
Q Consensus 314 s~e~i~~f~~~l~~~~Gi~v~vR~~~g~di~aaCGql~~~~~ 355 (375)
+.+++++|+++|+ .+|+.+++|+++|.||+||||||+.++.
T Consensus 304 s~e~i~~f~~~L~-~~Gi~vtvR~~~G~di~aaCGqL~~~~~ 344 (345)
T PRK14457 304 SPKRIQAFQRVLE-QRGVAVSVRASRGLDANAACGQLRRNAR 344 (345)
T ss_pred CHHHHHHHHHHHH-HCCCeEEEeCCCCCchhhccccchhccc
Confidence 9999999999999 7999999999999999999999987653
No 9
>PRK11194 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=100.00 E-value=5.2e-85 Score=640.23 Aligned_cols=329 Identities=36% Similarity=0.596 Sum_probs=311.3
Q ss_pred CCCCHHHHHHHHHHcCCCcchHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHHhcCCCCCcccceEEeCCCCCeEEEEEEe
Q 017203 7 SVFDGGIIRAEFEKAGIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHSVVDSSDDVTTKLLVKL 86 (375)
Q Consensus 7 ~~~~~~~l~~~~~~~g~~~~~~~qi~~~~~~~~~~~~~~~~~l~~~~r~~l~~~~~~~~~~~~~~~~s~dg~t~k~l~~~ 86 (375)
--++++||++++.++|+|+|||+|||+|+|++++.+|++|+|||+++|+.|++.|.+..+++.+.+.|.|| |+||||+|
T Consensus 9 ~~~~~~el~~~~~~~g~~~~ra~qi~~w~y~~~~~~~~~mt~l~~~~r~~L~~~~~~~~~~~~~~~~s~dg-t~K~l~~l 87 (372)
T PRK11194 9 LDLNRQQMREFFAELGEKPFRADQVMKWIYHYGCDDFDEMTNINKVLREKLKEVAEIRAPEVAEEQRSSDG-TIKWAIAV 87 (372)
T ss_pred ccCCHHHHHHHHHHcCCCchHHHHHHHHHHhcCCCCHHHhccccHHHHHHHhcccccCCcccceEEEcCCC-eEEEEEEc
Confidence 44779999999999999999999999999999999999999999999999999999999999999999999 89999999
Q ss_pred cCCCeEEEEEeeecCCCCCCCCCCCCCCCceEEEEeecCCCCCcCccccCCCCCcccCCCHHHHHHHHHHhhhh------
Q 017203 87 QNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRL------ 160 (375)
Q Consensus 87 ~dg~~ve~v~i~~~~~~~~~~g~~~~~~~r~tl~vssq~GCnl~C~fC~~~~~~~~r~lt~~ei~~qi~~~~~~------ 160 (375)
.| ..||||+||+. .|.|+|||||+||+++|.||+|+.+++.+++|++||++|+..+...
T Consensus 88 ~D-~~iEsV~~~~~--------------~~~t~CvSsQvGC~~~C~FC~t~~~g~~rnLt~~EIv~Qv~~~~~~~~~~~~ 152 (372)
T PRK11194 88 GD-QRVETVYIPED--------------DRATLCVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIGAAKV 152 (372)
T ss_pred CC-CeEEEEEEEcC--------------CCeeEEEecCCCCCCcCCCCCCCCCCCCCcCCHHHHHHHHHHHHHHhhhccc
Confidence 99 99999999975 5799999999999999999999999999999999999999876532
Q ss_pred ---CCcceEEEEeCCCcccCHHHHHHHHHHhhCC-CCCCCCCeEEEEeCCchhhHHHHhhhCCCceEEEEecCCCHHHHh
Q 017203 161 ---SNIRNVVFMGMGEPLNNYAALVEAVRIMTGL-PFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRC 236 (375)
Q Consensus 161 ---~~i~~Ivf~GmGEPlln~~~l~~~i~~l~~~-g~~i~~~~itisTnG~~~~i~~l~~~~~~v~laiSL~a~~~~~r~ 236 (375)
.++++||||||||||+|++++.++++.+++. |+++++++|+|+|+|+.|.+++|++.. .+.|++|||+++++.|+
T Consensus 153 ~gg~~~~nvV~mGmGEPL~N~d~v~~al~~l~~~~g~~i~~r~itVsTsG~~~~i~~l~~~~-d~~LaiSLha~d~e~R~ 231 (372)
T PRK11194 153 TGQRPITNVVMMGMGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMI-DVALAISLHAPNDELRD 231 (372)
T ss_pred cCCcccceEEEecCCccccCHHHHHHHHHHHhhhhccCcCCCeEEEECCCCchHHHHHHhcc-CeEEEeeccCCCHHHHH
Confidence 2489999999999999999999999999977 999999999999999999999999865 57899999999999999
Q ss_pred hhcCCCCCCCHHHHHHHHHHHHHhcC---CcEEEEEEeeCCCCCCHHHHHHHHHHHhcCCCEEEEeecCCCCCCCCCCCC
Q 017203 237 QIMPAARAFPLEKLMNALKEYQKNSQ---QKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTS 313 (375)
Q Consensus 237 ~i~p~~~~~~~~~vl~~l~~~~~~~g---~~v~i~~vli~gvND~~e~~~~L~~~l~~~~~~vnLip~np~~~~~~~~~~ 313 (375)
++||++++++++++++++++|..+++ ++|+++|+||||+||+++++++|++|+++++++||||||||.+ +.+|++|
T Consensus 232 ~lmPin~~~~l~~ll~a~~~y~~~~~~~~rrI~irypLIpGvNDs~e~a~~La~ll~~l~~~VnLIPYN~~~-~~~~~~p 310 (372)
T PRK11194 232 EIVPINKKYNIETFLAAVRRYLEKSNANQGRVTVEYVMLDHVNDGTEHAHQLAELLKDTPCKINLIPWNPFP-GAPYGRS 310 (372)
T ss_pred HhcCCcccccHHHHHHHHHHHHHhcccCCCeEEEEEEeECCCCCCHHHHHHHHHHHhcCCceEEEecCCCCC-CCCCCCC
Confidence 99999999999999999999998885 7899999999999999999999999999999999999999994 6789999
Q ss_pred cHHHHHHHHHHHHhcCCceEEeccCCCcchhcccchhhccc
Q 017203 314 SDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNL 354 (375)
Q Consensus 314 s~e~i~~f~~~l~~~~Gi~v~vR~~~g~di~aaCGql~~~~ 354 (375)
+.+++++|.++|+ .+|+.|++|.++|.||+||||||+.+.
T Consensus 311 s~e~v~~f~~~L~-~~Gi~vtiR~~~G~di~aaCGQL~~~~ 350 (372)
T PRK11194 311 SNSRIDRFSKVLM-EYGFTVIVRKTRGDDIDAACGQLAGDV 350 (372)
T ss_pred CHHHHHHHHHHHH-HCCCeEEEecCCCCcchhcCcCcHhhh
Confidence 9999999999999 799999999999999999999999876
No 10
>PRK14454 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=100.00 E-value=7.9e-85 Score=635.32 Aligned_cols=333 Identities=34% Similarity=0.630 Sum_probs=315.7
Q ss_pred CCCCCHHHHHHHHHHcCCCcchHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHHhcCCCCCcccceEEeCC-CCCeEEEEE
Q 017203 6 RSVFDGGIIRAEFEKAGIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHSVVDSS-DDVTTKLLV 84 (375)
Q Consensus 6 ~~~~~~~~l~~~~~~~g~~~~~~~qi~~~~~~~~~~~~~~~~~l~~~~r~~l~~~~~~~~~~~~~~~~s~-dg~t~k~l~ 84 (375)
.--++++||++++.++|+|+|||+|||+|+|++++.+|++|+|||+++|+.|++.|.+..+++++.+.|+ || |+||||
T Consensus 4 ~~~~~~~~l~~~~~~~g~~~~r~~qi~~~~~~~~~~~~~~m~~l~~~~r~~l~~~~~~~~~~~~~~~~s~~dg-t~k~l~ 82 (342)
T PRK14454 4 ILDFTLEELKEWMKENGEKKFRAKQIFDWIYKKGVTDFDEMTNIPKNLREKLKENFYIGIPKIVKKLVSKIDG-TVKFLF 82 (342)
T ss_pred cccCCHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCHHHhccccHHHHHHHHhceecCCccEEEEEEecCCC-eEEEEE
Confidence 3457899999999999999999999999999999999999999999999999999999999999999996 88 999999
Q ss_pred EecCCCeEEEEEeeecCCCCCCCCCCCCCCCceEEEEeecCCCCCcCccccCCCCCcccCCCHHHHHHHHHHhhhhC--C
Q 017203 85 KLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLS--N 162 (375)
Q Consensus 85 ~~~dg~~ve~v~i~~~~~~~~~~g~~~~~~~r~tl~vssq~GCnl~C~fC~~~~~~~~r~lt~~ei~~qi~~~~~~~--~ 162 (375)
++.||..||||+||+. .+.|+|||||+||+|+|.||+++.+|+.+++|++||++|+.....+. .
T Consensus 83 ~~~dg~~iE~V~i~~~--------------~~~t~cvSsqvGC~~~C~FC~tg~~G~~rnlt~~EI~~qv~~~~~~~~~~ 148 (342)
T PRK14454 83 ELEDGNIIESVVMKYK--------------HGNSICVSTQVGCRMGCKFCASTIGGMVRNLTAGEMLDQILAAQNDIGER 148 (342)
T ss_pred EcCCCCEEEEEEEEEc--------------CCCEEEEEcCCCCCCcCCcCCCCCCCCcccCCHHHHHHHHHHHHHHhcCC
Confidence 9999999999999985 46899999999999999999999999999999999999999876542 5
Q ss_pred cceEEEEeCCCcccCHHHHHHHHHHhhCC-CCCCCCCeEEEEeCCchhhHHHHhhhCCCceEEEEecCCCHHHHhhhcCC
Q 017203 163 IRNVVFMGMGEPLNNYAALVEAVRIMTGL-PFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPA 241 (375)
Q Consensus 163 i~~Ivf~GmGEPlln~~~l~~~i~~l~~~-g~~i~~~~itisTnG~~~~i~~l~~~~~~v~laiSL~a~~~~~r~~i~p~ 241 (375)
+++||||||||||+|++++.++++.+++. |+++|.+|++|+|+|+.|.+.++++..+.+++++|||+++++.|+++||+
T Consensus 149 ~~gvV~mggGEPLln~d~v~~~l~~l~~~~gi~~~~r~itvsTsG~~p~i~~l~~~~~~~~laisLka~d~e~r~~l~pv 228 (342)
T PRK14454 149 ISNIVLMGSGEPLDNYENVMKFLKIVNSPYGLNIGQRHITLSTCGIVPKIYELADENLQITLAISLHAPNDELRKKMMPI 228 (342)
T ss_pred CCCEEEECCchhhcCHHHHHHHHHHHhcccccCcCCCceEEECcCChhHHHHHHhhcccceEEEecCCCCHHHHHHhcCC
Confidence 78999999999999999999999999985 99999999999999999999999987767889999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCcEEEEEEeeCCCCCCHHHHHHHHHHHhcCCCEEEEeecCCCCCCCCCCCCcHHHHHHH
Q 017203 242 ARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSF 321 (375)
Q Consensus 242 ~~~~~~~~vl~~l~~~~~~~g~~v~i~~vli~gvND~~e~~~~L~~~l~~~~~~vnLip~np~~~~~~~~~~s~e~i~~f 321 (375)
+.+++++++++++++|..+++++++++|+||||+||+++++++|+++++++.++||||||||.+ ..+|++|+.+++++|
T Consensus 229 ~~~~~L~~l~~~~~~~~~~~~~rv~iey~LI~gvNDs~eda~~La~llk~l~~~VnLiPyn~~~-~~~~~~ps~e~l~~f 307 (342)
T PRK14454 229 ANKYSIEELIEACKYYINKTNRRITFEYALVKGVNDSKEDAKELGKLLKGMLCHVNLIPVNEVK-ENGFKKSSKEKIKKF 307 (342)
T ss_pred cccCCHHHHHHHHHHHHHHhCCEEEEEEEeECCCCCCHHHHHHHHHHHhcCCceEEEEecCCCC-CCCCCCCCHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999998999999999995 678999999999999
Q ss_pred HHHHHhcCCceEEeccCCCcchhcccchhhcccc
Q 017203 322 QKILRGSYNIRTTVRKQMGQDISGACGQLVVNLP 355 (375)
Q Consensus 322 ~~~l~~~~Gi~v~vR~~~g~di~aaCGql~~~~~ 355 (375)
+++|+ ++|+.|++|.++|.||+||||||+.++.
T Consensus 308 ~~~l~-~~gi~v~iR~~~G~di~aaCGQL~~~~~ 340 (342)
T PRK14454 308 KNILK-KNGIETTIRREMGSDINAACGQLRRSYL 340 (342)
T ss_pred HHHHH-HCCCcEEEeCCCCCchhhcCcccchhhc
Confidence 99999 7999999999999999999999987654
No 11
>TIGR00048 radical SAM enzyme, Cfr family. A Staphylococcus sciuri plasmid-borne member of this family, Cfr, has been identified as essential to transferrable resistance to chloramphenicol and florfenicol by an unknown mechanism. A 14-15 residue cluster with four perfectly conserved Cys residues suggests this protein may be an enzyme with an iron-sulfur cluster. The Cys cluster is part of the radical SAM domain, suggested to provide a general mechanism by which the Fe-S center cleaves S-adenosylmethionine to initiate radical-based catalysis. Members of this family lack apparent transmembrane domains.
Probab=100.00 E-value=1.6e-84 Score=636.63 Aligned_cols=332 Identities=36% Similarity=0.620 Sum_probs=313.1
Q ss_pred CCCHHHHHHHHHHcCCCcchHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHHhcCCCCCcccceEEeCCCCCeEEEEEEec
Q 017203 8 VFDGGIIRAEFEKAGIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHSVVDSSDDVTTKLLVKLQ 87 (375)
Q Consensus 8 ~~~~~~l~~~~~~~g~~~~~~~qi~~~~~~~~~~~~~~~~~l~~~~r~~l~~~~~~~~~~~~~~~~s~dg~t~k~l~~~~ 87 (375)
-++++||++++.++|+|+|||+|||+|||++++.+|++|+|||+++|+.|++.|.+..+++++.+.|.|| |+||||++.
T Consensus 11 ~~~~~~l~~~~~~~g~~~~r~~qi~~~~~~~~~~~~~~m~~l~~~~r~~l~~~~~~~~~~~~~~~~s~dg-t~K~l~~~~ 89 (355)
T TIGR00048 11 DLTLQELRQWLKDLGEKPFRAKQIYKWLYHKGKDSFDDMTNLSKDLREKLNRVFEIRTPEIAHEQRSVDG-TIKYLFKLG 89 (355)
T ss_pred cCCHHHHHHHHHHcCCCchhHHHHHHHHHHcCCCCHHHccccCHHHHHHHhhcEEeCCcceeEEEEcCCC-eEEEEEEcC
Confidence 3679999999999999999999999999999999999999999999999999999999999999999999 899999999
Q ss_pred CCCeEEEEEeeecCCCCCCCCCCCCCCCceEEEEeecCCCCCcCccccCCCCCcccCCCHHHHHHHHHHhhhh-----CC
Q 017203 88 NGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRL-----SN 162 (375)
Q Consensus 88 dg~~ve~v~i~~~~~~~~~~g~~~~~~~r~tl~vssq~GCnl~C~fC~~~~~~~~r~lt~~ei~~qi~~~~~~-----~~ 162 (375)
||..||||+||+. .|.|+|||||+|||++|.||+++..++.++++++||++|+..+... .+
T Consensus 90 dg~~iE~V~i~~~--------------~~~t~cVSsQ~GC~l~C~fC~t~~~g~~r~lt~~Eiv~qv~~~~~~~~~~~~~ 155 (355)
T TIGR00048 90 DGQTIETVLIPEK--------------DRATVCVSSQVGCALGCTFCATAKGGFNRNLEASEIIGQVLRVQKINNETGER 155 (355)
T ss_pred CCCEEEEEEEEeC--------------CCcEEEEecCCCCCCcCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhhhcCCC
Confidence 9999999999975 5799999999999999999999999999999999999999875431 35
Q ss_pred cceEEEEeCCCcccCHHHHHHHHHHhhCC-CCCCCCCeEEEEeCCchhhHHHHhhhCCCceEEEEecCCCHHHHhhhcCC
Q 017203 163 IRNVVFMGMGEPLNNYAALVEAVRIMTGL-PFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPA 241 (375)
Q Consensus 163 i~~Ivf~GmGEPlln~~~l~~~i~~l~~~-g~~i~~~~itisTnG~~~~i~~l~~~~~~v~laiSL~a~~~~~r~~i~p~ 241 (375)
+.+|+||||||||+|++++.++++.+++. |++++.++++|+|||+.+.+.+|++....+.|+||||+++++.|+++||.
T Consensus 156 v~nVvfmGmGEPLln~d~v~~~l~~l~~~~g~~i~~~~itisT~G~~~~i~~l~~~~l~~~LaiSL~a~~~e~r~~l~p~ 235 (355)
T TIGR00048 156 VSNVVFMGMGEPLLNLNEVVKAMEIMNDDFGLGISKRRITISTSGVVPKIDILADKMLQVALAISLHAPNDELRSSLMPI 235 (355)
T ss_pred eeEEEEecCCchhhCHHHHHHHHHHhhcccccCcCCCeEEEECCCchHHHHHHHHhCCCcEEEEEeCCCCHHHHHHhcCc
Confidence 78999999999999999999999999875 89999999999999999999999987666789999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCcEEEEEEeeCCCCCCHHHHHHHHHHHhcCCCEEEEeecCCCCCCCCCCCCcHHHHHHH
Q 017203 242 ARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSF 321 (375)
Q Consensus 242 ~~~~~~~~vl~~l~~~~~~~g~~v~i~~vli~gvND~~e~~~~L~~~l~~~~~~vnLip~np~~~~~~~~~~s~e~i~~f 321 (375)
+++++++++++++++|+++++++|+++|+++||+||+++++++|++++++++++||||||||. +..+|++|+.+++++|
T Consensus 236 ~~~~~l~~ll~~l~~~~~~~g~~VtieyvLI~GvNDs~e~a~~La~llk~l~~~VnLIPynp~-~~~~~~~ps~e~i~~f 314 (355)
T TIGR00048 236 NKKYNIETLLAAVRRYLNKTGRRVTFEYVLLDGVNDQVEHAEELAELLKGTKCKVNLIPWNPF-PEADYERPSNEQIDRF 314 (355)
T ss_pred ccCCCHHHHHHHHHHHHHHhCCEEEEEEEEECCCCCCHHHHHHHHHHHhcCCCceEEEecccC-CCCCCCCCCHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999 4678999999999999
Q ss_pred HHHHHhcCCceEEeccCCCcchhcccchhhccccC
Q 017203 322 QKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPD 356 (375)
Q Consensus 322 ~~~l~~~~Gi~v~vR~~~g~di~aaCGql~~~~~~ 356 (375)
+++|+ ++|+.|++|.++|.||+||||||+.+..-
T Consensus 315 ~~~L~-~~gi~v~iR~~~G~di~aaCGqL~~~~~~ 348 (355)
T TIGR00048 315 AKTLM-SYGFTVTIRKSRGDDIDAACGQLRAKDVI 348 (355)
T ss_pred HHHHH-HCCCeEEEeCCCCcchhhcCCcchhhhcc
Confidence 99999 79999999999999999999999876543
No 12
>PRK14470 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=100.00 E-value=3.2e-84 Score=628.65 Aligned_cols=328 Identities=31% Similarity=0.462 Sum_probs=308.0
Q ss_pred CCCHHHHHHHHHHcCCCcchHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHHhcCCCCCcccceEEeCCCCCeEEEEEEec
Q 017203 8 VFDGGIIRAEFEKAGIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHSVVDSSDDVTTKLLVKLQ 87 (375)
Q Consensus 8 ~~~~~~l~~~~~~~g~~~~~~~qi~~~~~~~~~~~~~~~~~l~~~~r~~l~~~~~~~~~~~~~~~~s~dg~t~k~l~~~~ 87 (375)
-++++||++++.++|+|+|||+|||+|+|++++. |++|+|||+++|++|++.|.+..+++++.+.|.|| |+||||+++
T Consensus 3 ~~~~~~~~~~~~~~g~~~~r~~qi~~~~~~~~~~-~~~m~~l~~~~r~~l~~~~~~~~~~~~~~~~s~d~-t~k~l~~l~ 80 (336)
T PRK14470 3 HLSGQDSRALARPAGISLEDARRITGAVIGRGAP-LRSARNVRRSVLDEVDALATPGELRLVERVDAKDG-FRKYLFELP 80 (336)
T ss_pred CCCHHHHHHHHHHcCCCcHHHHHHHHHHHhCCCC-HHHhccCCHHHHHHHhcccccCCceEEEEEEcCCC-cEEEEEEcC
Confidence 3789999999999999999999999999999999 99999999999999999999999999999999999 899999999
Q ss_pred CCCeEEEEEeeecCCCCCCCCCCCCCCCceEEEEeecCCCCCcCccccCCCCCcccCCCHHHHHHHHHHhhhh--CCcce
Q 017203 88 NGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRL--SNIRN 165 (375)
Q Consensus 88 dg~~ve~v~i~~~~~~~~~~g~~~~~~~r~tl~vssq~GCnl~C~fC~~~~~~~~r~lt~~ei~~qi~~~~~~--~~i~~ 165 (375)
||..||||+||+. ..|+|+|||||+|||++|.||+++.+++.++++++||++|+..+... ..+++
T Consensus 81 dg~~iE~V~ip~~-------------~~~~t~cvSsq~GC~l~C~fC~tg~~g~~r~l~~~EI~~qi~~~~~~~~~~i~n 147 (336)
T PRK14470 81 DGLRVEAVRIPLF-------------DTHHVVCLSSQAGCALGCAFCATGKLGLDRSLRSWEIVAQLLAVRADSERPITG 147 (336)
T ss_pred CCCEEEEEecccc-------------CCCCEEEEeCCCCcCCCCccccCCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCE
Confidence 9999999999853 24799999999999999999999999999999999999999876432 36899
Q ss_pred EEEEeCCCcccCHHHHHHHHHHhhCC-CCCCCCCeEEEEeCCchhhHHHHhhhCCCceEEEEecCCCHHHHhhhcCCCCC
Q 017203 166 VVFMGMGEPLNNYAALVEAVRIMTGL-PFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARA 244 (375)
Q Consensus 166 Ivf~GmGEPlln~~~l~~~i~~l~~~-g~~i~~~~itisTnG~~~~i~~l~~~~~~v~laiSL~a~~~~~r~~i~p~~~~ 244 (375)
||||||||||+|++++.++++.+++. |++++.++|+|+|||+.|.+.++++..+.+.|++||||++++.|.+|||++++
T Consensus 148 IvfmGmGEPllN~d~v~~~i~~l~~~~~~~~~~~~ItVsTnG~~p~i~~l~~~~~~~~LaiSLhA~~~e~r~~I~p~~~~ 227 (336)
T PRK14470 148 VVFMGQGEPFLNYDEVLRAAYALCDPAGARIDGRRISISTAGVVPMIRRYTAEGHKFRLCISLNAAIPWKRRALMPIEQG 227 (336)
T ss_pred EEEEecCccccCHHHHHHHHHHHhCccccccCCCceEEEecCChHHHHHHHhcCCCceEEEecCCCCHHHHHHhcCcccc
Confidence 99999999999999999999999987 89999999999999999999999987666889999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhcCCcEEEEEEeeCCCCCCHHHHHHHHHHHhcCCCEEEEeecCCCCCCCCCCCCcHHHHHHHHHH
Q 017203 245 FPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKI 324 (375)
Q Consensus 245 ~~~~~vl~~l~~~~~~~g~~v~i~~vli~gvND~~e~~~~L~~~l~~~~~~vnLip~np~~~~~~~~~~s~e~i~~f~~~ 324 (375)
+++++++++++.+.+. +++++++|++++|+||+++++++|+++++++.++||+|||||.. + +|++|+.+++++|+++
T Consensus 228 ~~le~il~ai~~~~~~-~rri~ieyvLI~GvNDseeda~~La~llk~l~~~vnlI~~N~~~-~-~~~~p~~~~i~~f~~~ 304 (336)
T PRK14470 228 FPLDELVEAIREHAAL-RGRVTLEYVMISGVNVGEEDAAALGRLLAGIPVRLNPIAVNDAT-G-RYRPPDEDEWNAFRDA 304 (336)
T ss_pred CCHHHHHHHHHHHHHh-CCCeEEEEEEEecccCCHHHHHHHHHHHhcCCCeEEEeccCCCC-C-CccCCCHHHHHHHHHH
Confidence 9999999999888766 89999999999999999999999999999999999999999973 4 8999999999999999
Q ss_pred HH-hcCCceEEeccCCCcchhcccchhhcc
Q 017203 325 LR-GSYNIRTTVRKQMGQDISGACGQLVVN 353 (375)
Q Consensus 325 l~-~~~Gi~v~vR~~~g~di~aaCGql~~~ 353 (375)
|+ ..+|+.|++|+++|+||+||||||+.+
T Consensus 305 l~~~~~g~~~~~R~~~G~di~aaCGqL~~~ 334 (336)
T PRK14470 305 LARELPGTPVVRRYSGGQDEHAACGMLASR 334 (336)
T ss_pred HHHccCCeEEEEECCCCCChHhccCccccc
Confidence 93 268999999999999999999999874
No 13
>PRK14453 chloramphenicol/florfenicol resistance protein; Provisional
Probab=100.00 E-value=1.2e-83 Score=627.04 Aligned_cols=334 Identities=36% Similarity=0.607 Sum_probs=310.5
Q ss_pred CCCCCHHHHHHHHHHcCCCcchHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHHhcC--CCCCcccceEEeCCCCCeEEEE
Q 017203 6 RSVFDGGIIRAEFEKAGIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKF--KPLTSTLHSVVDSSDDVTTKLL 83 (375)
Q Consensus 6 ~~~~~~~~l~~~~~~~g~~~~~~~qi~~~~~~~~~~~~~~~~~l~~~~r~~l~~~~--~~~~~~~~~~~~s~dg~t~k~l 83 (375)
+.-++++||++++.++|+|+|||+|||+|||++++.+|++|+|||+++|++|++.| .+..+.++..+.| || |+|||
T Consensus 2 ~~~~~~~~l~~~~~~~g~~~~r~~qi~~~~~~~~~~~~~~m~~l~~~~r~~l~~~~~~~~~~~~~~~~~~s-dg-t~K~l 79 (347)
T PRK14453 2 QTKTKYGKMKQILSNLKLPDYRYEQITKAIFKQRIDNFEDMHILPKALRESLINEFGKNVLSVIPVFEQDS-KQ-VTKVL 79 (347)
T ss_pred CccCCHHHHHHHHHHcCCCcHHHHHHHHHHHhcCCCCHHHhccCCHHHHHHHHHHHhhccCCceeEEEEec-CC-eEEEE
Confidence 55689999999999999999999999999999999999999999999999999999 6888888998888 88 99999
Q ss_pred EEecCCCeEEEEEeeecCCCCCCCCCCCCCCCceEEEEeecCCCCCcCccccCCCCCcccCCCHHHHHHHHHHhhhh-CC
Q 017203 84 VKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRL-SN 162 (375)
Q Consensus 84 ~~~~dg~~ve~v~i~~~~~~~~~~g~~~~~~~r~tl~vssq~GCnl~C~fC~~~~~~~~r~lt~~ei~~qi~~~~~~-~~ 162 (375)
|++.||..||||+||+.. .|.|+|||||+||||+|.||+++.+++.++||++||++|+..+... .+
T Consensus 80 ~~l~dg~~iE~V~i~~~~-------------~~~t~CvssqvGC~~~C~FC~tg~~g~~rnLt~~EIv~qv~~~~~~~~~ 146 (347)
T PRK14453 80 FELTDGERIEAVGLKYKQ-------------GWESFCISSQCGCGFGCRFCATGSIGLKRNLTADEITDQLLYFYLNGHR 146 (347)
T ss_pred EEcCCCCEEEEEEEeecC-------------CceeEEEecCCCcCCCCCCCCCCCCCCcccCCHHHHHHHHHHHHhcCCC
Confidence 999999999999999752 2599999999999999999999999999999999999999876532 34
Q ss_pred cceEEEEeCCCcccCHHHHHHHHHHhhCC-CCCCCCCeEEEEeCCchhhHHHHhhhCCCceEEEEecCCCHHHHhhhcCC
Q 017203 163 IRNVVFMGMGEPLNNYAALVEAVRIMTGL-PFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPA 241 (375)
Q Consensus 163 i~~Ivf~GmGEPlln~~~l~~~i~~l~~~-g~~i~~~~itisTnG~~~~i~~l~~~~~~v~laiSL~a~~~~~r~~i~p~ 241 (375)
+++|+||||||||+|+ ++.++++.+++. +++++.++++|+|+|+.|.++++++..+.++|++|||+++++.|.++||+
T Consensus 147 i~~IvfmGmGEPLln~-~v~~~i~~l~~~~~~~~~~r~itVsT~G~~~~i~~l~~~~~~v~LalSLha~dd~~r~~l~pi 225 (347)
T PRK14453 147 LDSISFMGMGEALANP-ELFDALKILTDPNLFGLSQRRITISTIGIIPGIQRLTQEFPQVNLTFSLHSPFESQRSELMPI 225 (347)
T ss_pred cceEEEeecCCccCCH-HHHHHHHHHhcccccCCCCCcEEEECCCCchhHHHHHhhccCcCEEEEecCCCHHHHHHhcCc
Confidence 8999999999999995 699999999987 88999999999999999889999998888999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCcEEEEEEeeCCCCCCHHHHHHHHHHHhcC-----CCEEEEeecCCCCC-CCCCCCCcH
Q 017203 242 ARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETF-----QVVVNLIPFNPIGS-VSQFRTSSD 315 (375)
Q Consensus 242 ~~~~~~~~vl~~l~~~~~~~g~~v~i~~vli~gvND~~e~~~~L~~~l~~~-----~~~vnLip~np~~~-~~~~~~~s~ 315 (375)
+++++++++++++++|+.+++.+|+++|+||||+||+++++++|++|++++ .++||||||||.+. ..+|++|+.
T Consensus 226 ~~~~~L~~ll~~~~~~l~~~~~~V~iry~LI~GvNDs~e~a~~L~~~lk~l~~~~~~~~VnLIPyn~~~~~~~~~~~ps~ 305 (347)
T PRK14453 226 NKRFPLNEVMKTLDEHIRHTGRKVYIAYIMLEGVNDSKEHAEAVVGLLRNRGSWEHLYHVNLIPYNSTDKTPFKFQSSSA 305 (347)
T ss_pred cccccHHHHHHHHHHHHHhcCCcEEEEEEeECCCCCCHHHHHHHHHHHhhccccCCcceEEEecCCCCCCCCccCCCCCH
Confidence 999999999999999999899999999999999999999999999999987 46899999999852 125999999
Q ss_pred HHHHHHHHHHHhcCCceEEeccCCCcchhcccchhhccccC
Q 017203 316 DKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPD 356 (375)
Q Consensus 316 e~i~~f~~~l~~~~Gi~v~vR~~~g~di~aaCGql~~~~~~ 356 (375)
+++.+|+++|+ +.|+.|++|+++|+||+||||||+.+..+
T Consensus 306 e~v~~f~~~L~-~~Gi~vtiR~~~G~di~aaCGqL~~~~~~ 345 (347)
T PRK14453 306 GQIKQFCSTLK-SAGISVTVRTQFGSDISAACGQLYGNYEN 345 (347)
T ss_pred HHHHHHHHHHH-HCCCcEEEeCCCCCchhhccccchhhhcc
Confidence 99999999999 79999999999999999999999987654
No 14
>PRK14460 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=100.00 E-value=2.6e-83 Score=627.30 Aligned_cols=338 Identities=36% Similarity=0.599 Sum_probs=316.1
Q ss_pred CCCCCHHHHHHHHH-HcCCCcchHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHHhcCCCCCcccceEEeCCCCCeEEEEE
Q 017203 6 RSVFDGGIIRAEFE-KAGIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHSVVDSSDDVTTKLLV 84 (375)
Q Consensus 6 ~~~~~~~~l~~~~~-~~g~~~~~~~qi~~~~~~~~~~~~~~~~~l~~~~r~~l~~~~~~~~~~~~~~~~s~dg~t~k~l~ 84 (375)
.--++++||++++. ++|+|+|||+|||+|||++++.+|++|+|||+++|+.|++.|.+..+++++.+.|.|| |+||||
T Consensus 4 ~~~~~~~~l~~~~~~~~g~~~~r~~qi~~~~~~~~~~~~~~m~~l~~~~r~~l~~~~~~~~~~~~~~~~s~dg-t~K~l~ 82 (354)
T PRK14460 4 ILNLTYPELEAFITAELGEPRFRARQIWQWLWQKGARDFDSMTNVSKALRARLAEKAVINWPEVETVQTSSDG-TVKFLL 82 (354)
T ss_pred cccCCHHHHHHHHHHhcCCCchHHHHHHHHHHHcCCCCHHHhccccHHHHHHHhcceecCCcceeEEEEcCCC-cEEEEE
Confidence 34578999999999 9999999999999999999999999999999999999999999999999999999999 899999
Q ss_pred EecCCCeEEEEEeeecCCCCCCCCCCCCCCCceEEEEeecCCCCCcCccccCCCCCcccCCCHHHHHHHHHHhhhh----
Q 017203 85 KLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRL---- 160 (375)
Q Consensus 85 ~~~dg~~ve~v~i~~~~~~~~~~g~~~~~~~r~tl~vssq~GCnl~C~fC~~~~~~~~r~lt~~ei~~qi~~~~~~---- 160 (375)
++.||..||||+||+.. .|+|+|+|||+|||++|.||+++.+++.+++|++||++|+..+...
T Consensus 83 ~~~dg~~iE~V~~p~~~-------------~r~t~CvSsq~GC~~~C~FC~tg~~g~~rnlt~~EI~~qv~~~~~~~~~~ 149 (354)
T PRK14460 83 RLADGALVETVLIPSKS-------------RRYTQCLSCQVGCAMGCTFCSTGTMGFERNMTMGEILGQVLVAREHLGDN 149 (354)
T ss_pred EcCCCCEEEEEEeEcCC-------------CceeEEeeCCCCcCCCCccCCCCCCCCCcCCCHHHHHHHHHHHHHHHhhc
Confidence 99999999999999852 3799999999999999999999999999999999999999755322
Q ss_pred -C--C-cceEEEEeCCCcccCHHHHHHHHHHhhCC-CCCCCCCeEEEEeCCchhhHHHHhhhCCCceEEEEecCCCHHHH
Q 017203 161 -S--N-IRNVVFMGMGEPLNNYAALVEAVRIMTGL-PFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVR 235 (375)
Q Consensus 161 -~--~-i~~Ivf~GmGEPlln~~~l~~~i~~l~~~-g~~i~~~~itisTnG~~~~i~~l~~~~~~v~laiSL~a~~~~~r 235 (375)
. . +++|+||||||||+|++++.++++.+++. |++++.++++|+|||+.+.+++|++... +.|+||||+++++.|
T Consensus 150 g~g~~~i~nIvfmGmGEPLln~~~v~~~l~~l~~~~Gl~~~~r~itvsT~G~~~~i~~L~~~~l-~~L~iSLha~~~e~r 228 (354)
T PRK14460 150 GPDHPILRNLVFMGMGEPLLNLDEVMRSLRTLNNEKGLNFSPRRITVSTCGIEKGLRELGESGL-AFLAVSLHAPNQELR 228 (354)
T ss_pred cCCCcceeEEEEecCCcccCCHHHHHHHHHHHhhhhccCCCCCeEEEECCCChHHHHHHHhCCC-cEEEEeCCCCCHHHH
Confidence 1 2 78999999999999999999999999986 9999999999999999888899998764 789999999999999
Q ss_pred hhhcCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEEeeCCCCCCHHHHHHHHHHHhcCCCEEEEeecCCCCCCCCCCCCcH
Q 017203 236 CQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSD 315 (375)
Q Consensus 236 ~~i~p~~~~~~~~~vl~~l~~~~~~~g~~v~i~~vli~gvND~~e~~~~L~~~l~~~~~~vnLip~np~~~~~~~~~~s~ 315 (375)
+++||.++.+++++++++++.|..+++.+|+++|+|++|+||+++++++|++++++++++||||||||. .+.+|++|+.
T Consensus 229 ~~i~p~~~~~~l~~ll~al~~~~~~~~~~v~iey~LI~GvNDs~ed~~~l~~~l~~~~~~VnLIpyn~~-~g~~y~~p~~ 307 (354)
T PRK14460 229 ERIMPKAARWPLDDLIAALKSYPLKTRERVTFEYLLLGGVNDSLEHARELVRLLSRTKCKLNLIVYNPA-EGLPYSAPTE 307 (354)
T ss_pred HHhcCccccCCHHHHHHHHHHHHHhcCCeEEEEEEEECCCCCCHHHHHHHHHHHhcCCCcEEEEcCCCC-CCCCCCCCCH
Confidence 999999999999999999998988999999999999999999999999999999999999999999998 5778999999
Q ss_pred HHHHHHHHHHHhcCCceEEeccCCCcchhcccchhhccccCccCC
Q 017203 316 DKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDKISA 360 (375)
Q Consensus 316 e~i~~f~~~l~~~~Gi~v~vR~~~g~di~aaCGql~~~~~~~~~~ 360 (375)
+++++|+++|+ .+|+.|++|+++|.||+||||||+.+..++++.
T Consensus 308 e~v~~f~~~l~-~~Gi~vtir~~~G~di~aaCGqL~~~~~~~~~~ 351 (354)
T PRK14460 308 ERILAFEKYLW-SKGITAIIRKSKGQDIKAACGQLKAEELGRGNS 351 (354)
T ss_pred HHHHHHHHHHH-HCCCeEEEeCCCCCchHhccccchhhhhhcccc
Confidence 99999999999 799999999999999999999999987766543
No 15
>PRK14455 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=100.00 E-value=6.1e-83 Score=625.62 Aligned_cols=333 Identities=33% Similarity=0.620 Sum_probs=314.2
Q ss_pred CCCCHHHHHHHHHHcCCCcchHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHHhcCCCCCcccceEEeCCCCCeEEEEEEe
Q 017203 7 SVFDGGIIRAEFEKAGIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHSVVDSSDDVTTKLLVKL 86 (375)
Q Consensus 7 ~~~~~~~l~~~~~~~g~~~~~~~qi~~~~~~~~~~~~~~~~~l~~~~r~~l~~~~~~~~~~~~~~~~s~dg~t~k~l~~~ 86 (375)
--++++||++++.++|+|+|||+|||+|+|++++.+|++|+|||+++|+.|++.|.+..+++++.+.|.|| |+||||++
T Consensus 14 ~~~~~~~l~~~~~~~g~~~~r~~qi~~~~~~~~~~~~~~m~~l~~~~r~~l~~~~~~~~~~~~~~~~s~dg-t~K~l~~~ 92 (356)
T PRK14455 14 YSLTLDELQEWLVEQGEKKFRATQIWDWLYRKRVQSFEEMTNLSKDLREKLNDNFVVTTLKTRVKQESKDG-TIKFLFEL 92 (356)
T ss_pred ccCCHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCHHHhcccCHHHHHHHhcccccCCccEEEEEEcCCC-cEEEEEEc
Confidence 44679999999999999999999999999999999999999999999999999999999999999999999 89999999
Q ss_pred cCCCeEEEEEeeecCCCCCCCCCCCCCCCceEEEEeecCCCCCcCccccCCCCCcccCCCHHHHHHHHHHhhhh-----C
Q 017203 87 QNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRL-----S 161 (375)
Q Consensus 87 ~dg~~ve~v~i~~~~~~~~~~g~~~~~~~r~tl~vssq~GCnl~C~fC~~~~~~~~r~lt~~ei~~qi~~~~~~-----~ 161 (375)
.||..||||+||+. .|.|+|||||+|||++|.||+++.+++.+++|++||++|+..+... .
T Consensus 93 ~dg~~ie~V~~~~~--------------~~~t~ciSsqvGC~~~C~FC~t~~~~~~r~lt~~EIv~qv~~~~~~~~~~g~ 158 (356)
T PRK14455 93 PDGYLIETVLMRHE--------------YGNSVCVTTQVGCRIGCTFCASTLGGLKRDLEAGEIVAQVMLVQKYLDETEE 158 (356)
T ss_pred CCCCEEEEEEEEec--------------CCceEEEECCCCCCCCCCcCCCCCCCCCccCCHHHHHHHHHHHHHHHhhcCC
Confidence 99999999999975 4799999999999999999999999999999999999999875432 3
Q ss_pred CcceEEEEeCCCcccCHHHHHHHHHHhhCC-CCCCCCCeEEEEeCCchhhHHHHhhhCCCceEEEEecCCCHHHHhhhcC
Q 017203 162 NIRNVVFMGMGEPLNNYAALVEAVRIMTGL-PFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMP 240 (375)
Q Consensus 162 ~i~~Ivf~GmGEPlln~~~l~~~i~~l~~~-g~~i~~~~itisTnG~~~~i~~l~~~~~~v~laiSL~a~~~~~r~~i~p 240 (375)
++++|+||||||||+|++++.++++.+++. |+++|.++++|+|||+.+.+.++++..+.++|++|||+++++.|+++||
T Consensus 159 ~v~~Vv~~GmGEPLln~~~v~~~l~~l~~~~g~~~s~r~itvsT~G~~~~i~~l~d~~l~~~LaiSL~a~~~e~r~~l~p 238 (356)
T PRK14455 159 RVSHIVVMGIGEPFDNYDNVMDFLRIINDDKGLAIGARHITVSTSGIAPKIYDFADEGLQINLAISLHAPNNELRSSLMP 238 (356)
T ss_pred CcceEEEeccccccCCHHHHHHHHHHHhcccCcccCCCceEEEecCchHhHHHHHhcccCeeEEeccCCCCHHHHHHhcC
Confidence 588999999999999999999999999986 9999999999999999999999998776688999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCcEEEEEEeeCCCCCCHHHHHHHHHHHhcCCCEEEEeecCCCCCCCCCCCCcHHHHHH
Q 017203 241 AARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSS 320 (375)
Q Consensus 241 ~~~~~~~~~vl~~l~~~~~~~g~~v~i~~vli~gvND~~e~~~~L~~~l~~~~~~vnLip~np~~~~~~~~~~s~e~i~~ 320 (375)
+++++++++++++++.+.+..+++++++|+|++|+||+++++++|++|+++++++||||||||.+ ...|++|+.+++.+
T Consensus 239 i~~~~~l~~Il~~l~~~~~~~~~~v~iey~lI~gvNDs~ed~~~La~ll~~l~~~VnLIPynp~~-~~ky~~ps~e~l~~ 317 (356)
T PRK14455 239 INRAYPLEKLMEAIEYYIEKTNRRVTFEYILLGGVNDQVEHAEELADLLKGIKCHVNLIPVNPVP-ERDYVRTPKEDIFA 317 (356)
T ss_pred cccCCCHHHHHHHHHHHHHhcCCeEEEEEEEeCCCCCCHHHHHHHHHHHhcCCCcEEEEecCcCC-CCCCcCCCHHHHHH
Confidence 99999999999999988888899999999999999999999999999999999999999999994 66899999999999
Q ss_pred HHHHHHhcCCceEEeccCCCcchhcccchhhccccC
Q 017203 321 FQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPD 356 (375)
Q Consensus 321 f~~~l~~~~Gi~v~vR~~~g~di~aaCGql~~~~~~ 356 (375)
|+++|+ ++|+.|++|+++|.||+||||||+.+..+
T Consensus 318 f~~~L~-~~gi~v~ir~~~g~di~aaCGqL~~~~~~ 352 (356)
T PRK14455 318 FEDTLK-KNGVNCTIRREHGTDIDAACGQLRAKERK 352 (356)
T ss_pred HHHHHH-HCCCcEEEeCCCCcchhhcCccchhhhhc
Confidence 999999 79999999999999999999999987654
No 16
>PRK14464 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=100.00 E-value=1.8e-83 Score=621.41 Aligned_cols=327 Identities=30% Similarity=0.475 Sum_probs=307.9
Q ss_pred CCHHHHHHHHHHcCCCcchHHHHH-HHHHhCCCCC--CCCCCCCCHHHHHHHHhc-CCCCCcccceEEe-CCCCCeEEEE
Q 017203 9 FDGGIIRAEFEKAGIKQHFIPLIW-KYVIENPNCE--WDEFPSLPSAAYSLLRSK-FKPLTSTLHSVVD-SSDDVTTKLL 83 (375)
Q Consensus 9 ~~~~~l~~~~~~~g~~~~~~~qi~-~~~~~~~~~~--~~~~~~l~~~~r~~l~~~-~~~~~~~~~~~~~-s~dg~t~k~l 83 (375)
|+++||++++.++|+|+|||+||| +|+|++++.+ |++|+|||+++|++|++. |.+..+++...+. |.|| |+|||
T Consensus 1 ~~~~el~~~~~~~g~~~~ra~Qi~~~w~~~~~~~~~~~~~mt~l~~~~r~~L~~~~~~~~~~~~~~~~~~s~dg-t~K~l 79 (344)
T PRK14464 1 MRIQDLRQRLRALGAKPCHEGRILRAWLQGLPLDTRRQRAEDFLPLALREALPALEAELDGLARLRSEHPGEDG-SARLL 79 (344)
T ss_pred CCHHHHHHHHHHcCCChhHHHHHHHHHHHhCCCCccchhhhccCCHHHHHHHHhcCeeccCcceEEEEEecCCC-cEEEE
Confidence 578999999999999999999999 5999999999 699999999999999999 8999999888877 4799 89999
Q ss_pred EEecCCCeEEEEEeeecCCCCCCCCCCCCCCCceEEEEeecCCCCCcCccccCCCCCcccCCCHHHHHHHHHHhhhhCCc
Q 017203 84 VKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSNI 163 (375)
Q Consensus 84 ~~~~dg~~ve~v~i~~~~~~~~~~g~~~~~~~r~tl~vssq~GCnl~C~fC~~~~~~~~r~lt~~ei~~qi~~~~~~~~i 163 (375)
|++.||..||||+||+ .|+|||||+||+++|.||+++.+++.++++++||++|+..+.....+
T Consensus 80 ~~l~Dg~~iEtV~i~~-----------------~t~CvSsQvGC~~~C~FC~tg~~g~~RnLs~~EI~~Qv~~~~~~~~i 142 (344)
T PRK14464 80 VELADGQMVESVLLPR-----------------DGLCVSTQVGCAVGCVFCMTGRSGLLRQLGSAEIVAQVVLARRRRAV 142 (344)
T ss_pred EEcCCCCEEEEEEecC-----------------CcEEEEccCCcCCCCCcCcCCCCCCCCCCCHHHHHHHHHHHHhcCCC
Confidence 9999999999999973 48999999999999999999999999999999999999987766679
Q ss_pred ceEEEEeCCCcccCHHHHHHHHHHhhCCCCCCCCCeEEEEeCCchhhHHHHhhhCCCceEEEEecCCCHHHHhhhcCCCC
Q 017203 164 RNVVFMGMGEPLNNYAALVEAVRIMTGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAAR 243 (375)
Q Consensus 164 ~~Ivf~GmGEPlln~~~l~~~i~~l~~~g~~i~~~~itisTnG~~~~i~~l~~~~~~v~laiSL~a~~~~~r~~i~p~~~ 243 (375)
++||||||||||+|+++++++++.+++. .+++.++++|||.|..+.+.+|++....+.|++||||++++.|.++||.++
T Consensus 143 ~nIVfmGmGEPl~N~d~vl~ai~~l~~~-~~i~~r~itiST~G~~~~i~rL~~~~v~~~LaiSLhA~~~e~R~~imP~~~ 221 (344)
T PRK14464 143 KKVVFMGMGEPAHNLDNVLEAIDLLGTE-GGIGHKNLVFSTVGDPRVFERLPQQRVKPALALSLHTTRAELRARLLPRAP 221 (344)
T ss_pred CEEEEeccCcccCCHHHHHHHHHHhhch-hcCCCceEEEecccCchHHHHHHHhcCChHHHHHhcCCChhHhheeCCccC
Confidence 9999999999999999999999999877 468889999999999999999998765678999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhcCCcEEEEEEeeCCCCCCHHHHHHHHHHHhcCCCEEEEeecCCCCCCCCCCCCcHHHHHHHHH
Q 017203 244 AFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQK 323 (375)
Q Consensus 244 ~~~~~~vl~~l~~~~~~~g~~v~i~~vli~gvND~~e~~~~L~~~l~~~~~~vnLip~np~~~~~~~~~~s~e~i~~f~~ 323 (375)
+++++++++++++|.+.+|++|+++|+|++|+||+++++.+|++++++..++||||||||. ++..|.+|+.+++.+|.+
T Consensus 222 ~~~l~el~~a~~~~~~~~grri~~EyvLl~GVNDs~e~a~~L~~~l~~~~~~vNLIPyN~v-~g~~~~rp~~~~i~~f~~ 300 (344)
T PRK14464 222 RIAPEELVELGEAYARATGYPIQYQWTLLEGVNDSDEEMDGIVRLLKGKYAVMNLIPYNSV-DGDAYRRPSGERIVAMAR 300 (344)
T ss_pred CCCHHHHHHHHHHHHHHHCCEEEEEEEEeCCCCCCHHHHHHHHHHHhccccccceecCCcc-CCCCccCCCHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999 578899999999999999
Q ss_pred HHHhcCCceEEeccCCCcchhcccchhhccccC
Q 017203 324 ILRGSYNIRTTVRKQMGQDISGACGQLVVNLPD 356 (375)
Q Consensus 324 ~l~~~~Gi~v~vR~~~g~di~aaCGql~~~~~~ 356 (375)
.|+ ..|+.|++|+++|+||+||||||+.+..+
T Consensus 301 ~L~-~~gi~~tiR~~~G~di~aACGqL~~~~~~ 332 (344)
T PRK14464 301 YLH-RRGVLTKVRNSAGQDVDGGCGQLRARAAK 332 (344)
T ss_pred HHH-HCCceEEEECCCCCchhhcCcchhhhhcc
Confidence 999 79999999999999999999999876543
No 17
>PRK14456 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=100.00 E-value=1.6e-82 Score=623.04 Aligned_cols=329 Identities=33% Similarity=0.548 Sum_probs=308.9
Q ss_pred CCCHHHHHHHHHHcCCCcchHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHHhcCCCCCcccceEEeC-----CCCCeEEE
Q 017203 8 VFDGGIIRAEFEKAGIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHSVVDS-----SDDVTTKL 82 (375)
Q Consensus 8 ~~~~~~l~~~~~~~g~~~~~~~qi~~~~~~~~~~~~~~~~~l~~~~r~~l~~~~~~~~~~~~~~~~s-----~dg~t~k~ 82 (375)
-++++||++++.++|+|+|||+|||+|+|++++.+|++|+|||+++|++|++.|.+..+++++.+.| .|| |+||
T Consensus 22 ~~~~~el~~~~~~~g~~~~r~~qi~~w~y~~~~~~~~~m~~l~~~~r~~l~~~~~~~~~~~~~~~~s~d~~~~dg-t~K~ 100 (368)
T PRK14456 22 NLRRQELTELLARLGEPAWRAAQLHQWLFSHRALSFEEMTTLSKPLRRKLAESFAIQPPVTEKHDETMEGSPAGP-TEKL 100 (368)
T ss_pred cCCHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCHHHhccccHHHHHHHhcceecCCcceEEEEeeccCCCCCC-eEEE
Confidence 3569999999999999999999999999999999999999999999999999999999999999999 577 8999
Q ss_pred EEEecCCCeEEEEEeeecCCCCCCCCCCCCCCCceEEEEeecCCCCCcCccccCCCCCcccCCCHHHHHHHHHHhhh---
Q 017203 83 LVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASR--- 159 (375)
Q Consensus 83 l~~~~dg~~ve~v~i~~~~~~~~~~g~~~~~~~r~tl~vssq~GCnl~C~fC~~~~~~~~r~lt~~ei~~qi~~~~~--- 159 (375)
||++.||..||||+||++ .+.|+|+|||+|||++|.||+++.+++.++|+++||++|+..+..
T Consensus 101 l~~l~dg~~iEtV~i~~~--------------~~~t~ciSsq~GCnl~C~FC~tg~~g~~rnLt~~EI~~qv~~~~~~~~ 166 (368)
T PRK14456 101 LIKLPDGELVETVLIPGP--------------ERMTACISSQAGCALRCSFCATGQMGFRRNLTAGEITGQVFALSDMLA 166 (368)
T ss_pred EEEcCCCCEEEEEEEecC--------------CceEEEEEecCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
Confidence 999999999999999864 579999999999999999999999999999999999999865422
Q ss_pred ----hCCcceEEEEeCCCcccCHHHHHHHHHHhhCC--CCCCCCCeEEEEeCCchhhHHHHhhhCCCceEEEEecCCCHH
Q 017203 160 ----LSNIRNVVFMGMGEPLNNYAALVEAVRIMTGL--PFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQD 233 (375)
Q Consensus 160 ----~~~i~~Ivf~GmGEPlln~~~l~~~i~~l~~~--g~~i~~~~itisTnG~~~~i~~l~~~~~~v~laiSL~a~~~~ 233 (375)
..++.+|+||||||||+|++++.++++.+++. +++++.++|+++|||+.+.+.+|++.++.+.|+|||||++++
T Consensus 167 ~~~~~~~v~nIvfmGmGEPLln~d~v~~~i~~l~~~~~~~~is~r~ItisT~Gl~~~i~~L~~~gl~~~LaiSL~a~~~e 246 (368)
T PRK14456 167 ERNRERGITNIVFMGMGEPLLNTDNVFEAVLTLSTRKYRFSISQRKITISTVGITPEIDRLATSGLKTKLAVSLHSADQE 246 (368)
T ss_pred hhhccCCccEEEEeCcCccccCHHHHHHHHHHHhccccccCcCcCeeEEECCCChHHHHHHHHcCCCceEEEEecCCCHH
Confidence 13589999999999999999999999999974 678889999999999999999999988767899999999999
Q ss_pred HHhhhcCCCC-CCCHHHHHHHHHHHHHhcCCcEEEEEEeeCCCCCCHHHHHHHHHHHhcCCCEEEEeecCCCCCCCCCCC
Q 017203 234 VRCQIMPAAR-AFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRT 312 (375)
Q Consensus 234 ~r~~i~p~~~-~~~~~~vl~~l~~~~~~~g~~v~i~~vli~gvND~~e~~~~L~~~l~~~~~~vnLip~np~~~~~~~~~ 312 (375)
.|.++||+++ ++++++++++++.|.+++|.+|+++|+|++|+||+++++++|++|++++.++||+|||||.+ ..+|.+
T Consensus 247 ~r~~i~P~~~~~~~l~~l~~~i~~~~~~~g~~V~ieyvLI~GvNDs~eda~~L~~~l~~~~~~VnlIpyn~~~-~~~~~~ 325 (368)
T PRK14456 247 KRERLMPQAARDYPLDELREALIGYASKTGEPVTLVYMLLEGINDSPEDARKLIRFASRFFCKINLIDYNSIV-NIKFEP 325 (368)
T ss_pred HHHHhccccCCCCCHHHHHHHHHHHHHhcCCeEEEEEEEEcCCCCCHHHHHHHHHHHhcCCCeeEEeeeccCC-CCCCCC
Confidence 9999999985 89999999999999999999999999999999999999999999999999999999999994 678999
Q ss_pred CcHHHHHHHHHHHHhcCCceEEeccCCCcchhcccchhhcc
Q 017203 313 SSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVN 353 (375)
Q Consensus 313 ~s~e~i~~f~~~l~~~~Gi~v~vR~~~g~di~aaCGql~~~ 353 (375)
|+.+.+++|+++|+ ++|+.|++|+++|.||+||||||+.+
T Consensus 326 ps~e~i~~F~~~L~-~~Gi~vtvR~~~G~di~aACGQL~~~ 365 (368)
T PRK14456 326 VCSSTRERFRDRLL-DAGLQVTVRKSYGTTINAACGQLAAR 365 (368)
T ss_pred CCHHHHHHHHHHHH-HCCCcEEeeCCCCcchhhcCCcchhc
Confidence 99999999999999 79999999999999999999999875
No 18
>PRK14463 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=100.00 E-value=2.7e-82 Score=619.04 Aligned_cols=337 Identities=36% Similarity=0.572 Sum_probs=315.3
Q ss_pred CCCCCCCCCHHHHHHHHHHcCCCcchHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHHhcCCCCCcccceEEeCCCCCeEE
Q 017203 2 TYDYRSVFDGGIIRAEFEKAGIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHSVVDSSDDVTTK 81 (375)
Q Consensus 2 ~~~~~~~~~~~~l~~~~~~~g~~~~~~~qi~~~~~~~~~~~~~~~~~l~~~~r~~l~~~~~~~~~~~~~~~~s~dg~t~k 81 (375)
.|...--++++||++++.++|+|+|||+|||+|+|++++.+|++|+||||++|+.|++.|.+..+++.+.+.|.|| |+|
T Consensus 3 ~~~~~~~~~~~~l~~~~~~~g~~~~r~~qi~~~~~~~~~~~~~~m~~l~~~~r~~l~~~~~~~~~~~~~~~~s~dg-t~k 81 (349)
T PRK14463 3 EKTDIKNLTLQELEAFLAGQGKERFRAKQIFKWLYQRDARSFAEMTNLSKDLRAELEETARISNLEPEAVEVSRDG-TRK 81 (349)
T ss_pred cccccccCCHHHHHHHHHHcCCCchHHHHHHHHHHHhCCCCHHHhcccCHHHHHhhcCCeeecCcceeEEEEcCCC-cEE
Confidence 3433455789999999999999999999999999999999999999999999999999999999999999999999 899
Q ss_pred EEEEecCCCeEEEEEeeecCCCCCCCCCCCCCCCceEEEEeecCCCCCcCccccCCCCCcccCCCHHHHHHHHHHhhhhC
Q 017203 82 LLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLS 161 (375)
Q Consensus 82 ~l~~~~dg~~ve~v~i~~~~~~~~~~g~~~~~~~r~tl~vssq~GCnl~C~fC~~~~~~~~r~lt~~ei~~qi~~~~~~~ 161 (375)
|||+++||..||||+||+. .|.|+|||||+|||++|.||+++..++.++++++||++|+..+....
T Consensus 82 ~l~~~~dg~~iE~V~~~~~--------------~~~t~cvSsq~GC~~~C~FC~tg~~~~~r~lt~~EI~~qv~~~~~~~ 147 (349)
T PRK14463 82 YLFRLEDGNAVESVLIPDE--------------DRNTLCISSQVGCAMGCAFCLTGTFRLTRNLTTAEIVNQVCAVKRDV 147 (349)
T ss_pred EEEEcCCCCeEEEEEEEec--------------CCcEEEEEecCCcCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHhcC
Confidence 9999999999999999975 57999999999999999999999888899999999999998875545
Q ss_pred CcceEEEEeCCCcccCHHHHHHHHHHhhCC-CCCCCCCeEEEEeCCchhhHHHHhhhCCCceEEEEecCCCHHHHhhhcC
Q 017203 162 NIRNVVFMGMGEPLNNYAALVEAVRIMTGL-PFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMP 240 (375)
Q Consensus 162 ~i~~Ivf~GmGEPlln~~~l~~~i~~l~~~-g~~i~~~~itisTnG~~~~i~~l~~~~~~v~laiSL~a~~~~~r~~i~p 240 (375)
++++|+||||||||+|+++++++++.+++. |+++|.++++|+|||+++.+.+++... .+.|+|||||++++.|+++||
T Consensus 148 ~i~~IvfmG~GEPl~n~~~vi~~l~~l~~~~gl~~s~r~itVsTnGl~~~i~~l~~~~-~~~LaiSL~a~~~e~r~~I~p 226 (349)
T PRK14463 148 PVRNIVFMGMGEPLANLDNVIPALQILTDPDGLQFSTRKVTVSTSGLVPEMEELGREV-TVNLAVSLNATTDEVRDRIMP 226 (349)
T ss_pred CccEEEEecCCcchhcHHHHHHHHHHhhcccccCcCCceEEEECCCchHHHHHHhhcc-CeEEEEeCCCCCHHHHHHhcC
Confidence 689999999999999999999999999875 999999999999999999888888764 478999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCcEEEEEEeeCCCCCCHHHHHHHHHHHhcCCCEEEEeecCCCCCCCCCCCCcHHHHHH
Q 017203 241 AARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSS 320 (375)
Q Consensus 241 ~~~~~~~~~vl~~l~~~~~~~g~~v~i~~vli~gvND~~e~~~~L~~~l~~~~~~vnLip~np~~~~~~~~~~s~e~i~~ 320 (375)
+|++++++++++++++|...++++|+++|+|++|+||+++++++|++++++++++||||||||.+ +.+|++|+.+++++
T Consensus 227 ink~~~l~~l~~a~~~~~~~~~~~v~ieyvLI~GvNDs~e~~~~L~~ll~~l~~~vnlIPyn~~~-~~~~~~ps~e~i~~ 305 (349)
T PRK14463 227 VNRRYPLAELLAACKAFPLPGRRKITIEYVMIRGLNDSLEDAKRLVRLLSDIPSKVNLIPFNEHE-GCDFRSPTQEAIDR 305 (349)
T ss_pred cccCCCHHHHHHHHHHHHHhcCCeEEEEEEEeCCCCCCHHHHHHHHHHHhccCceEEEEecCCCC-CCCCCCCCHHHHHH
Confidence 99999999999999999888899999999999999999999999999999999999999999994 67899999999999
Q ss_pred HHHHHHhcCCceEEeccCCCcchhcccchhhccccC
Q 017203 321 FQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPD 356 (375)
Q Consensus 321 f~~~l~~~~Gi~v~vR~~~g~di~aaCGql~~~~~~ 356 (375)
|+++|+ ++|+.|++|+++|.||+||||||+.+.-+
T Consensus 306 f~~~L~-~~gi~v~vR~~~G~di~aaCGqL~~~~~~ 340 (349)
T PRK14463 306 FHKYLL-DKHVTVITRSSRGSDISAACGQLKGKLDK 340 (349)
T ss_pred HHHHHH-HCCceEEEeCCCCcchhhccCcccccccC
Confidence 999999 79999999999999999999999876543
No 19
>PRK14468 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=100.00 E-value=5.4e-81 Score=609.06 Aligned_cols=329 Identities=36% Similarity=0.594 Sum_probs=306.7
Q ss_pred CCCCCCCCHHHHHHHHHHcCCCcchHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHHhcCCCCCcccceEEeCCCCCeEEE
Q 017203 3 YDYRSVFDGGIIRAEFEKAGIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHSVVDSSDDVTTKL 82 (375)
Q Consensus 3 ~~~~~~~~~~~l~~~~~~~g~~~~~~~qi~~~~~~~~~~~~~~~~~l~~~~r~~l~~~~~~~~~~~~~~~~s~dg~t~k~ 82 (375)
|.|..-++++|| |+|+|||+|||+|+|++++.+|++|+|||+++|++|+++|.+..+++++.+.|.|| |+||
T Consensus 1 ~~~~~~~~~~~~-------~~~~~r~~qi~~~~~~~~~~~~~~m~~l~~~~r~~l~~~~~~~~~~~~~~~~s~dg-t~k~ 72 (343)
T PRK14468 1 MQPLLELHPDAL-------PGEGYRRAQLAEWLYAQGARTFDAMTNLPKALRAELAREYRLSPFREVETFRSQDG-SVKY 72 (343)
T ss_pred CcccccCCHHHc-------CCCchHHHHHHHHHHhcCCCCHHHhccccHHHHHHHhhccccCCceEEEEEEcCCC-cEEE
Confidence 445556778887 99999999999999999999999999999999999999999999999999999999 8999
Q ss_pred EEEecCCCeEEEEEeeecCCCCCCCCCCCCCCCceEEEEeecCCCCCcCccccCCCCCcccCCCHHHHHHHHHHhhhh--
Q 017203 83 LVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRL-- 160 (375)
Q Consensus 83 l~~~~dg~~ve~v~i~~~~~~~~~~g~~~~~~~r~tl~vssq~GCnl~C~fC~~~~~~~~r~lt~~ei~~qi~~~~~~-- 160 (375)
||+++||..||||+||+. .|.|+|||||+|||++|.||+++.+++.+++|++||++|+..+...
T Consensus 73 l~~~~dg~~iE~V~i~~~--------------~~~t~cvSsq~GC~l~C~fC~tg~~g~~r~Lt~~EI~~qv~~~~~~~g 138 (343)
T PRK14468 73 LFTLLDGKQTEAVYMPYL--------------DRKTICVSTMVGCPAGCAFCATGAMGFGRNLTAAEILDQVLAVAGHEG 138 (343)
T ss_pred EEECCCCCEEEEEEEEec--------------CCCEEEEEecCCCCCcCCCCCCCCCCCCCCCCHHHHHHHHHHHHhhcC
Confidence 999999999999999985 5799999999999999999999999999999999999999875432
Q ss_pred ---CCcceEEEEeCCCcccCHHHHHHHHHHhhCC-CCCCCCCeEEEEeCCchhhHHHHhhhCCCceEEEEecCCCHHHHh
Q 017203 161 ---SNIRNVVFMGMGEPLNNYAALVEAVRIMTGL-PFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRC 236 (375)
Q Consensus 161 ---~~i~~Ivf~GmGEPlln~~~l~~~i~~l~~~-g~~i~~~~itisTnG~~~~i~~l~~~~~~v~laiSL~a~~~~~r~ 236 (375)
.++++|+||||||||+|++++.++++.+.+. |++++.++++++|||+.+.+++|++..+.+.|++|||+++++.|+
T Consensus 139 ~~~~~i~~Vvf~GmGEPlln~~~v~~~i~~l~~~~g~~l~~r~itvST~G~~~~i~~L~~~~l~~~LaiSL~a~d~e~r~ 218 (343)
T PRK14468 139 ISPREIRNVVLMGMGEPLLNYENVLKAARIMLHPQALAMSPRRVTLSTVGIPKGIRRLAEEDLGVRLALSLHAPDEETRQ 218 (343)
T ss_pred cCcCCccEEEEeccCccccCHHHHHHHHHHhcccccccccCceEEEECCCChHHHHHHHHhCcCcEEEEEcCCCCHHHHH
Confidence 2478999999999999999999999999665 889999999999999988899999877667899999999999999
Q ss_pred hhcCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEEeeCCCCCCHHHHHHHHHHHhcCCCEEEEeecCCCCCCCCCCCCcHH
Q 017203 237 QIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDD 316 (375)
Q Consensus 237 ~i~p~~~~~~~~~vl~~l~~~~~~~g~~v~i~~vli~gvND~~e~~~~L~~~l~~~~~~vnLip~np~~~~~~~~~~s~e 316 (375)
++||.+++++++++++++++|.++++++|+++|+|++|+||+++++++|+++++++.++||||||||.. +..|++|+.+
T Consensus 219 ~i~p~~~~~~l~~ll~~l~~~~~~~~~~V~ieyvLI~GvNDs~e~~~~L~~ll~~~~~~VnLIPynp~~-~~~~~~ps~e 297 (343)
T PRK14468 219 RIIPTAHRYSIAEIMAAVRHYQAVTGRRVTLEYTMLKGVNDHLWQAELLADLLRGLVSHVNLIPFNPWE-GSPFQSSPRA 297 (343)
T ss_pred HhccccccCCHHHHHHHHHHHHHhcCCeEEEEEEEeCCCcCCHHHHHHHHHHHhcCCcEEEEEcCCCCC-CCCCCCCCHH
Confidence 999999899999999999989999999999999999999999999999999999999999999999984 6789999999
Q ss_pred HHHHHHHHHHhcCCceEEeccCCCcchhcccchhhcccc
Q 017203 317 KVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLP 355 (375)
Q Consensus 317 ~i~~f~~~l~~~~Gi~v~vR~~~g~di~aaCGql~~~~~ 355 (375)
++++|+++|+ ++|+.|++|+++|.||+||||||+.+..
T Consensus 298 ~i~~f~~~L~-~~Gi~vtiR~~~g~di~aaCGqL~~~~~ 335 (343)
T PRK14468 298 QILAFADVLE-RRGVPVSVRWSRGRDVGAACGQLALKRP 335 (343)
T ss_pred HHHHHHHHHH-HCCCeEEEeCCCCcchhhcCCccccCCc
Confidence 9999999999 7999999999999999999999987643
No 20
>PRK14469 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=100.00 E-value=1e-80 Score=609.36 Aligned_cols=332 Identities=36% Similarity=0.589 Sum_probs=311.1
Q ss_pred CCCCHHHHHHHHHHcCCCcchHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHHhcCCCCCcccceEEeCC-CCCeEEEEEE
Q 017203 7 SVFDGGIIRAEFEKAGIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHSVVDSS-DDVTTKLLVK 85 (375)
Q Consensus 7 ~~~~~~~l~~~~~~~g~~~~~~~qi~~~~~~~~~~~~~~~~~l~~~~r~~l~~~~~~~~~~~~~~~~s~-dg~t~k~l~~ 85 (375)
--++++||++++.++|+|+|||+|||+|+|++++.+|++|+|||+++|++|++.|.+..+++++.+.|. || |+||||+
T Consensus 5 ~~~~~~~~~~~~~~~g~~~~r~~qi~~~~~~~~~~~~~~~~~~~~~~r~~l~~~~~~~~~~~~~~~~s~~d~-t~k~l~~ 83 (343)
T PRK14469 5 LDLSYEELVSEITELGLEKYRADQILDWIYKKKVFNFDEMTNLSKDHRALLSEHFSIPFPKLLDKQVSKIDG-TTKFLWE 83 (343)
T ss_pred ccCCHHHHHHHHHHcCCCchHHHHHHHHHHhcCCCCHHHhccccHHHHHHHhhccccCCceEEEEEeccCCC-eEEEEEE
Confidence 457899999999999999999999999999999999999999999999999999999999999999996 88 9999999
Q ss_pred ecCCCeEEEEEeeecCCCCCCCCCCCCCCCceEEEEeecCCCCCcCccccCCCCCcccCCCHHHHHHHHHHhhhh--CCc
Q 017203 86 LQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRL--SNI 163 (375)
Q Consensus 86 ~~dg~~ve~v~i~~~~~~~~~~g~~~~~~~r~tl~vssq~GCnl~C~fC~~~~~~~~r~lt~~ei~~qi~~~~~~--~~i 163 (375)
+.||..||||+||++ .|.|+|||||+|||++|.||+++..++.++++++||++|+..+... ..+
T Consensus 84 ~~dg~~ie~v~~~~~--------------~~~t~cissq~GC~l~C~fC~tg~~g~~r~lt~~EI~~qv~~~~~~~~~~v 149 (343)
T PRK14469 84 LEDGNTIESVMLFHP--------------DRITACISTQVGCPVKCIFCATGQSGFVRNLTTGEIVSQILAMEKEEKKKV 149 (343)
T ss_pred cCCCCEEEEEEEecC--------------CCeEEEEEecCCCCCcCcCCCCCCCCccccCCHHHHHHHHHHHHHhccCCc
Confidence 999999999999985 4799999999999999999999998899999999999999865432 368
Q ss_pred ceEEEEeCCCcccCHHHHHHHHHHhhCC-CCCCCCCeEEEEeCCchhhHHHHhhhCCCceEEEEecCCCHHHHhhhcCCC
Q 017203 164 RNVVFMGMGEPLNNYAALVEAVRIMTGL-PFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAA 242 (375)
Q Consensus 164 ~~Ivf~GmGEPlln~~~l~~~i~~l~~~-g~~i~~~~itisTnG~~~~i~~l~~~~~~v~laiSL~a~~~~~r~~i~p~~ 242 (375)
++|+||||||||+|++++.++++.+++. |++++.++++++|||+.+.+++|++.++.+.|+|||||++++.|++++|.+
T Consensus 150 ~~Vvf~GmGEPLln~d~v~~~i~~l~~~~~~~~g~~~itisTnG~~~~i~~L~~~~l~~~LaiSL~a~~~e~r~~i~p~~ 229 (343)
T PRK14469 150 GNVVYMGMGEPLLNYENVIKSIKILNHKKMKNIGIRRITISTVGIPEKIIQLAEEGLDVKLALSLHAPTNFKRDQIVPLN 229 (343)
T ss_pred CeEEEEccChhhhhHHHHHHHHHHHhchhcccCCCCeEEEECCCChHHHHHHHhhCCCcEEEEEeCCCCHHHHHhhcCcC
Confidence 9999999999999999999999999887 777888899999999988899999887667899999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHhcCCcEEEEEEeeCCCCCCHHHHHHHHHHHhcCCCEEEEeecCCCCCCCCCCCCcHHHHHHHH
Q 017203 243 RAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQ 322 (375)
Q Consensus 243 ~~~~~~~vl~~l~~~~~~~g~~v~i~~vli~gvND~~e~~~~L~~~l~~~~~~vnLip~np~~~~~~~~~~s~e~i~~f~ 322 (375)
+++++++++++++.+...++.+++++|++++|+||+.+++++|++++++.+++||++||||.. .++++|+.+++.+|.
T Consensus 230 ~~~~l~~Il~~l~~~~~~~~~~v~i~yvlI~g~NDs~ed~~~La~llk~~~~~VnLIpynp~~--~~~~~ps~e~l~~f~ 307 (343)
T PRK14469 230 KKYSIEEIINAVKIYQKKTGNRVTIEYILIKGFNDEIEDAKKLAELLKGLKVFVNLIPVNPTV--PGLEKPSRERIERFK 307 (343)
T ss_pred CCCCHHHHHHHHHHHHHHhCCeEEEEEEEECCCCCCHHHHHHHHHHHhccCcEEEEEecCCCC--ccCCCCCHHHHHHHH
Confidence 999999999999988888889999999999999999999999999999999999999999983 378999999999999
Q ss_pred HHHHhcCCceEEeccCCCcchhcccchhhccccC
Q 017203 323 KILRGSYNIRTTVRKQMGQDISGACGQLVVNLPD 356 (375)
Q Consensus 323 ~~l~~~~Gi~v~vR~~~g~di~aaCGql~~~~~~ 356 (375)
++++ ++|+.|++|.++|.||+||||||+.+..+
T Consensus 308 ~~l~-~~gi~vtvr~~~g~di~aaCGqL~~~~~~ 340 (343)
T PRK14469 308 EILL-KNGIEAEIRREKGSDIEAACGQLRRRNLK 340 (343)
T ss_pred HHHH-HCCCeEEEeCCCCcchhhcCccchhhhhc
Confidence 9999 79999999999999999999999987654
No 21
>PRK11145 pflA pyruvate formate lyase-activating enzyme 1; Provisional
Probab=99.98 E-value=3.6e-31 Score=248.29 Aligned_cols=210 Identities=19% Similarity=0.379 Sum_probs=168.8
Q ss_pred CCCCCCCCCCCCCceEEEEeecCCCCCcCccccCCCC---CcccCCCHHHHHHHHHHhhhh--CCcceEEEEeCCCcccC
Q 017203 103 LGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTM---GFKSNLSSGEIVEQLVHASRL--SNIRNVVFMGMGEPLNN 177 (375)
Q Consensus 103 ~~~~~g~~~~~~~r~tl~vssq~GCnl~C~fC~~~~~---~~~r~lt~~ei~~qi~~~~~~--~~i~~Ivf~GmGEPlln 177 (375)
++.+|| +|.|.++++ .|||++|.||+++.. ...+.+|++|+++++...... ....+|+|+| ||||+|
T Consensus 13 ~~~~dg----~g~~~~~f~---~gCnl~C~~C~~~~~~~~~~~~~lt~eei~~~i~~~~~~~~~~~~~V~~sG-GEPll~ 84 (246)
T PRK11145 13 CGTVDG----PGIRFITFF---QGCLMRCLYCHNRDTWDTHGGKEVTVEELMKEVVTYRHFMNASGGGVTASG-GEAILQ 84 (246)
T ss_pred EeeECC----CCeEEEEEE---CCCCCcCCCCCCHHHCCCCCCeEcCHHHHHHHHHHhHHHHhcCCCeEEEeC-ccHhcC
Confidence 455666 358888888 899999999998643 335679999999998876432 1235899999 999999
Q ss_pred HHHHHHHHHHhhCCCCCCCCCeEEEEeCCchhh----HHHHhhhCCCce-EEEEecCCCHHHHhhhcCCCCCCCHHHHHH
Q 017203 178 YAALVEAVRIMTGLPFQVSPKRITVSTVGIVHA----INKFHSDLPGLN-LAVSLHAPVQDVRCQIMPAARAFPLEKLMN 252 (375)
Q Consensus 178 ~~~l~~~i~~l~~~g~~i~~~~itisTnG~~~~----i~~l~~~~~~v~-laiSL~a~~~~~r~~i~p~~~~~~~~~vl~ 252 (375)
++.+.++++.+++.| .+++++|||+.+. ++++.+ .++ +.||+|+.+++.++++++. +.+.+++
T Consensus 85 ~~~~~~l~~~~k~~g-----~~i~l~TNG~~~~~~~~~~~ll~---~~d~v~islk~~~~e~~~~~~g~----~~~~~l~ 152 (246)
T PRK11145 85 AEFVRDWFRACKKEG-----IHTCLDTNGFVRRYDPVIDELLD---VTDLVMLDLKQMNDEIHQNLVGV----SNHRTLE 152 (246)
T ss_pred HHHHHHHHHHHHHcC-----CCEEEECCCCCCcchHHHHHHHH---hCCEEEECCCcCChhhcccccCC----ChHHHHH
Confidence 988889999999877 4689999998642 233332 244 7899999999999998763 4578888
Q ss_pred HHHHHHHhcCCcEEEEEEeeCCCCCCHHHHHHHHHHHhcCC--CEEEEeecCCCCC-----------CCCCCCCcHHHHH
Q 017203 253 ALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQ--VVVNLIPFNPIGS-----------VSQFRTSSDDKVS 319 (375)
Q Consensus 253 ~l~~~~~~~g~~v~i~~vli~gvND~~e~~~~L~~~l~~~~--~~vnLip~np~~~-----------~~~~~~~s~e~i~ 319 (375)
++ +++.+.|.++.++++++||+||++++++++++|+++++ ..++++||||.+. ..++++|+.++++
T Consensus 153 ~i-~~l~~~g~~v~i~~~li~g~nd~~~ei~~l~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~ 231 (246)
T PRK11145 153 FA-RYLAKRNQKTWIRYVVVPGWTDDDDSAHRLGEFIKDMGNIEKIELLPYHELGKHKWEAMGEEYKLDGVKPPSKETME 231 (246)
T ss_pred HH-HHHHhCCCcEEEEEEEECCCCCCHHHHHHHHHHHHhcCCcceEEEecCCccchhHHHHcCCcccccCCCCCCHHHHH
Confidence 88 45667889999999999999999999999999999875 3699999998741 2357889999999
Q ss_pred HHHHHHHhcCCceEE
Q 017203 320 SFQKILRGSYNIRTT 334 (375)
Q Consensus 320 ~f~~~l~~~~Gi~v~ 334 (375)
++.++++ ++|++++
T Consensus 232 ~~~~~~~-~~g~~~~ 245 (246)
T PRK11145 232 RVKGILE-QYGHKVM 245 (246)
T ss_pred HHHHHHH-HcCCccc
Confidence 9999999 6888764
No 22
>COG1180 PflA Pyruvate-formate lyase-activating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=7e-27 Score=220.51 Aligned_cols=224 Identities=17% Similarity=0.305 Sum_probs=170.5
Q ss_pred CCCeEEEEEeeecCCCCCCCCCCCCCCCceEEEEeecCCCCCcCccccCCCCCc-ccCCCHHHHHHHHHHhhh-h-CCcc
Q 017203 88 NGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGF-KSNLSSGEIVEQLVHASR-L-SNIR 164 (375)
Q Consensus 88 dg~~ve~v~i~~~~~~~~~~g~~~~~~~r~tl~vssq~GCnl~C~fC~~~~~~~-~r~lt~~ei~~qi~~~~~-~-~~i~ 164 (375)
+|...... +.....++.+|| ||..+++++. .|||++|.||||+.... .+..+.+++..++..... . ..++
T Consensus 13 ~~~~~~~~-i~~ie~~~~~d~---~g~~~~~vf~---~GCnlrC~~C~N~~~~~~~~~~~~~~~~~e~l~~~~~~~~~~~ 85 (260)
T COG1180 13 YGMVLSAR-IDPIEKKPLVDG---PGSIRLSVFL---QGCNLRCPYCQNPEISQRGREVSGEEVSPEVLVDKAFYSESGG 85 (260)
T ss_pred cCCeeeEE-EecccccCCcCC---CCcEEEEEEe---CCCCCCCCCCCChhHhcccccCchhhcCHHHHHHHhhhcCCCC
Confidence 55444333 333334677787 3347788888 99999999999987654 245555555544443222 2 2678
Q ss_pred eEEEEeCCCcccCHHHHHHHHHHhhCCCCCCCCCeEEEEeCCchh--hHHHHhhhCCCceEEEEecCCCHHHHhhhcCCC
Q 017203 165 NVVFMGMGEPLNNYAALVEAVRIMTGLPFQVSPKRITVSTVGIVH--AINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAA 242 (375)
Q Consensus 165 ~Ivf~GmGEPlln~~~l~~~i~~l~~~g~~i~~~~itisTnG~~~--~i~~l~~~~~~v~laiSL~a~~~~~r~~i~p~~ 242 (375)
+|+|+| |||+++++++.++++.+++.| .+++++|||+.+ ..++|.+. -..+.++|++.+++.+++++.
T Consensus 86 gvt~SG-GEP~~q~e~~~~~~~~ake~G-----l~~~l~TnG~~~~~~~~~l~~~--~D~v~~DlK~~~~~~y~~~tg-- 155 (260)
T COG1180 86 GVTFSG-GEPTLQAEFALDLLRAAKERG-----LHVALDTNGFLPPEALEELLPL--LDAVLLDLKAFDDELYRKLTG-- 155 (260)
T ss_pred EEEEEC-CcchhhHHHHHHHHHHHHHCC-----CcEEEEcCCCCCHHHHHHHHhh--cCeEEEeeccCChHHHHHHhC--
Confidence 999999 999999999999999999988 679999999874 23455554 234779999999998999874
Q ss_pred CCCCHHHHHHHHHHHHHhcCCcEEEEEEeeCCCCCCHHHHHHHHHHHhcCC--CEEEEeecCCCCCCCCCCCCcHHHHHH
Q 017203 243 RAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQ--VVVNLIPFNPIGSVSQFRTSSDDKVSS 320 (375)
Q Consensus 243 ~~~~~~~vl~~l~~~~~~~g~~v~i~~vli~gvND~~e~~~~L~~~l~~~~--~~vnLip~np~~~~~~~~~~s~e~i~~ 320 (375)
.+.+.+++++ +++.+.|+.++++++++||+||++++++++++|+++++ ..+.+.||+|.+.....+.++.+.+++
T Consensus 156 --~~~~~vl~~~-~~l~~~g~~ve~r~lviPg~~d~~e~i~~i~~~i~~~~~~~p~~~l~fhp~~~~~~~p~~~~~~le~ 232 (260)
T COG1180 156 --ADNEPVLENL-ELLADLGVHVEIRTLVIPGYNDDEEEIRELAEFIADLGPEIPIHLLRFHPDYKLKDLPPTPVETLEE 232 (260)
T ss_pred --CCcHHHHHHH-HHHHcCCCeEEEEEEEECCCCCCHHHHHHHHHHHHhcCCcccEEEeccccCccccccCCCcHHHHHH
Confidence 3459999999 56677999999999999999999999999999999865 358999999996444445567788888
Q ss_pred HHHHHHhcCCce
Q 017203 321 FQKILRGSYNIR 332 (375)
Q Consensus 321 f~~~l~~~~Gi~ 332 (375)
+.+..+ +.+..
T Consensus 233 ~~~~a~-~~~~~ 243 (260)
T COG1180 233 AKKLAK-EEGLK 243 (260)
T ss_pred hHhhhH-HHHHH
Confidence 888776 45443
No 23
>TIGR01290 nifB nitrogenase cofactor biosynthesis protein NifB. This model describes NifB, a protein required for the biosynthesis of the iron-molybdenum (or iron-vanadium) cofactor used by the nitrogen-fixing enzyme nitrogenase. Archaeal homologs lack the most C-terminal region and score between the trusted and noise cutoffs of this model.
Probab=99.95 E-value=3.9e-27 Score=237.47 Aligned_cols=203 Identities=16% Similarity=0.345 Sum_probs=161.3
Q ss_pred CceEEEEeecCCCCCcCccccCCC-------CC-cccCCCHHHHHHHHHHhhhh-CCcceEEEEeCCCcccCHHHHHHHH
Q 017203 115 PRSTLCISSQVGCKMGCNFCATGT-------MG-FKSNLSSGEIVEQLVHASRL-SNIRNVVFMGMGEPLNNYAALVEAV 185 (375)
Q Consensus 115 ~r~tl~vssq~GCnl~C~fC~~~~-------~~-~~r~lt~~ei~~qi~~~~~~-~~i~~Ivf~GmGEPlln~~~l~~~i 185 (375)
.|..+-| +.|||++|.||++.. .+ ..+.||++|+++++...... ..++.|+|+|+||||+|++++.+.+
T Consensus 24 ~r~~~~v--t~~CNl~C~yC~~~~~~~~esrpg~~~~~Ltpee~~~~i~~v~~~~~~~~~V~iaG~GEPLl~~e~~~~~l 101 (442)
T TIGR01290 24 ARMHLAV--APACNIQCNYCNRKYDCANESRPGVVSELLTPEQALRKARQVAAEIPQLSVVGIAGPGDPLANIGKTFQTL 101 (442)
T ss_pred CEEEEec--CCCCCCcCcCCCCCCCCCcCCCCccccccCCHHHHHHHHHHHHHhcCCCCEEEEecCCCcccCccccHHHH
Confidence 4556555 599999999999842 22 23679999999999886543 3578999999999999998899999
Q ss_pred HHhhCCCCCCCCCeEEEEeCCch--hhHHHHhhhCCCceEEEEecCCCHHHHhhhcCC----CCCC--------CHHHHH
Q 017203 186 RIMTGLPFQVSPKRITVSTVGIV--HAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPA----ARAF--------PLEKLM 251 (375)
Q Consensus 186 ~~l~~~g~~i~~~~itisTnG~~--~~i~~l~~~~~~v~laiSL~a~~~~~r~~i~p~----~~~~--------~~~~vl 251 (375)
+.+++.. +..+++|+|||+. +.+++|.+.+. ..+.||||+.+++.+++|+|. ++.+ .++.++
T Consensus 102 ~~~~~~~---~~i~i~lsTNG~~l~e~i~~L~~~gv-d~V~islka~d~e~~~~Iy~~v~~~g~~~tG~~~~~il~e~~l 177 (442)
T TIGR01290 102 ELVARQL---PDVKLCLSTNGLMLPEHVDRLVDLGV-GHVTITINAIDPAVGEKIYPWVWYEGERYTGREAADLLIERQL 177 (442)
T ss_pred HHHHHhc---CCCeEEEECCCCCCHHHHHHHHHCCC-CeEEEeccCCCHHHHhhcchhhccccccccCcchHHHHHHHHH
Confidence 9998761 1268999999975 34677777642 468999999999999998762 2222 156778
Q ss_pred HHHHHHHHhcCCcEEEEEEeeCCCCCCHHHHHHHHHHHhcCCCE-EEEeecCCCCC-CCCC-----CCCcHHHHHHHHHH
Q 017203 252 NALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVV-VNLIPFNPIGS-VSQF-----RTSSDDKVSSFQKI 324 (375)
Q Consensus 252 ~~l~~~~~~~g~~v~i~~vli~gvND~~e~~~~L~~~l~~~~~~-vnLip~np~~~-~~~~-----~~~s~e~i~~f~~~ 324 (375)
++++ ++.+.|..++++++++||+|| +++.+++++++++++. +|++||+|... +..| ++|+.+++.++++.
T Consensus 178 ~~l~-~l~~~G~~v~v~~vlIpGiND--~~i~~l~~~~~~lg~~~~nl~p~~~~p~~G~~~~~~~~~~ps~e~l~~~~~~ 254 (442)
T TIGR01290 178 EGLE-KLTERGILVKVNSVLIPGIND--EHLVEVSKQVKELGAFLHNVMPLISAPEHGTVYGLNGQREPDPDELAALRDR 254 (442)
T ss_pred HHHH-HHHhCCCeEEEEEEeeCCcCH--HHHHHHHHHHHhCCCcEEEeecCCCccccCCccCcCCCCCcCHHHHHHHHHH
Confidence 9995 456778999999999999999 7999999999999864 89999998631 3333 88999999999999
Q ss_pred HH
Q 017203 325 LR 326 (375)
Q Consensus 325 l~ 326 (375)
++
T Consensus 255 ~~ 256 (442)
T TIGR01290 255 LE 256 (442)
T ss_pred HH
Confidence 87
No 24
>TIGR02493 PFLA pyruvate formate-lyase 1-activating enzyme. An iron-sulfur protein with a radical-SAM domain (pfam04055). A single glycine residue in EC 2.3.1.54, formate C-acetyltransferase (formate-pyruvate lyase), is oxidized to the corresponding radical by transfer of H from its CH2 to AdoMet with concomitant cleavage of the latter. The reaction requires Fe2+. The first stage is reduction of the AdoMet to give methionine and the 5'-deoxyadenosin-5-yl radical, which then abstracts a hydrogen radical from the glycine residue.
Probab=99.94 E-value=3.2e-25 Score=206.39 Aligned_cols=197 Identities=18% Similarity=0.370 Sum_probs=155.9
Q ss_pred CCceEEEEeecCCCCCcCccccCCCC---CcccCCCHHHHHHHHHHhhhhC--CcceEEEEeCCCcccCHHHHHHHHHHh
Q 017203 114 GPRSTLCISSQVGCKMGCNFCATGTM---GFKSNLSSGEIVEQLVHASRLS--NIRNVVFMGMGEPLNNYAALVEAVRIM 188 (375)
Q Consensus 114 ~~r~tl~vssq~GCnl~C~fC~~~~~---~~~r~lt~~ei~~qi~~~~~~~--~i~~Ivf~GmGEPlln~~~l~~~i~~l 188 (375)
+.+..++. .|||++|.||+++.. ...+.++++++++.+....... ....|+|+| ||||++++.+.++++.+
T Consensus 15 g~~~~v~~---~gCnl~C~~C~~~~~~~~~~~~~~s~e~i~~~i~~~~~~~~~~~~~I~~~G-GEPll~~~~~~~li~~~ 90 (235)
T TIGR02493 15 GIRFVVFM---QGCPLRCQYCHNPDTWDLKGGTEVTPEELIKEVGSYKDFFKASGGGVTFSG-GEPLLQPEFLSELFKAC 90 (235)
T ss_pred CceEEEEE---CCCCCcCCCCCChhhccCCCCEECCHHHHHHHHHHhHHHHhcCCCeEEEeC-cccccCHHHHHHHHHHH
Confidence 34444444 799999999998643 2235689999999888754321 125799999 99999988788999999
Q ss_pred hCCCCCCCCCeEEEEeCCch----hhHHHHhhhCCCceEEEEecCCCHHHHhhhcCCCCCCCHHHHHHHHHHHHHhcCCc
Q 017203 189 TGLPFQVSPKRITVSTVGIV----HAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQK 264 (375)
Q Consensus 189 ~~~g~~i~~~~itisTnG~~----~~i~~l~~~~~~v~laiSL~a~~~~~r~~i~p~~~~~~~~~vl~~l~~~~~~~g~~ 264 (375)
++.| .++++.|||+. ..+.++.+.. ..+.||+++.+++.+.++.+. ++++++++++ .+++.|.+
T Consensus 91 ~~~g-----~~~~i~TNG~~~~~~~~~~~ll~~~--d~v~isl~~~~~~~~~~~~g~----~~~~v~~~i~-~l~~~g~~ 158 (235)
T TIGR02493 91 KELG-----IHTCLDTSGFLGGCTEAADELLEYT--DLVLLDIKHFNPEKYKKLTGV----SLQPTLDFAK-YLAKRNKP 158 (235)
T ss_pred HHCC-----CCEEEEcCCCCCccHHHHHHHHHhC--CEEEEeCCCCCHHHHHHHHCC----CcHHHHHHHH-HHHhCCCc
Confidence 9876 45899999953 2345555432 347899999999999988532 6789999994 56788889
Q ss_pred EEEEEEeeCCCCCCHHHHHHHHHHHhcCCC--EEEEeecCCCC-----------CCCCCCCCcHHHHHHHHHHHH
Q 017203 265 IFIEYIMLDGVNDEEQHAHQLGKLLETFQV--VVNLIPFNPIG-----------SVSQFRTSSDDKVSSFQKILR 326 (375)
Q Consensus 265 v~i~~vli~gvND~~e~~~~L~~~l~~~~~--~vnLip~np~~-----------~~~~~~~~s~e~i~~f~~~l~ 326 (375)
+.+++++++++|++.++++++++|++.++. .+.++||+|.+ ++.++++|+.+++++++++++
T Consensus 159 ~~v~~vv~~~~~~n~~ei~~l~~~~~~l~~~~~~~~~p~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (235)
T TIGR02493 159 IWIRYVLVPGYTDSEEDIEALAEFVKTLPNVERVEVLPYHQLGVYKWEALGIEYPLEGVKPPNKEQLERAAEIFK 233 (235)
T ss_pred EEEEEeeeCCcCCCHHHHHHHHHHHHhCCCCceEEecCCCcccHHHHHHcCCcCccCCCCCCCHHHHHHHHHHHh
Confidence 999999999999999999999999999884 58899999864 234578999999999999887
No 25
>TIGR02494 PFLE_PFLC glycyl-radical enzyme activating protein family. This subset of the radical-SAM family (pfam04055) includes a number of probable activating proteins acting on different enzymes all requiring an amino-acid-centered radical. The closest relatives to this family are the pyruvate-formate lyase activating enzyme (PflA, 1.97.1.4, TIGR02493) and the anaerobic ribonucleotide reductase activating enzyme (TIGR02491). Included within this subfamily are activators of hydroxyphenyl acetate decarboxylase (HdpA, ), benzylsuccinate synthase (BssD, ), gycerol dehydratase (DhaB2, ) as well as enzymes annotated in E. coli as activators of different isozymes of pyruvate-formate lyase (PFLC and PFLE) however, these appear to lack characterization and may activate enzymes with distinctive functions. Most of the sequence-level variability between these forms is concentrated within an N-terminal domain which follows a conserved group of three cysteines and contains a variable pattern of 0
Probab=99.94 E-value=3.6e-25 Score=213.01 Aligned_cols=206 Identities=17% Similarity=0.351 Sum_probs=162.8
Q ss_pred CCCCCCCCCCCCCceEEEEeecCCCCCcCccccCCCCCc-----------------------------------------
Q 017203 103 LGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGF----------------------------------------- 141 (375)
Q Consensus 103 ~~~~~g~~~~~~~r~tl~vssq~GCnl~C~fC~~~~~~~----------------------------------------- 141 (375)
++.+|| +|.|.++|+ .|||+.|.+|+++....
T Consensus 7 ~~~~~g----~g~r~~~f~---~gc~~~C~~c~~p~~~~~~~~~~~~~~~C~~C~~C~~~Cp~~a~~~~~~~~~~~~~~~ 79 (295)
T TIGR02494 7 YSVHDG----PGIRTTVFL---KGCPLRCKWCSNPESQRKSPELLFKENRCLGCGKCVEVCPAGTARLSELADGRNRIII 79 (295)
T ss_pred ccccCC----CCchhHHHh---hcCCccCcccCCccccCCCceEEEccccCCCCchhhhhCcccccccccccCCCcceee
Confidence 566777 579999999 89999999999863211
Q ss_pred -----------------------ccCCCHHHHHHHHHHhhhhC--CcceEEEEeCCCcccCHHHHHHHHHHhhCCCCCCC
Q 017203 142 -----------------------KSNLSSGEIVEQLVHASRLS--NIRNVVFMGMGEPLNNYAALVEAVRIMTGLPFQVS 196 (375)
Q Consensus 142 -----------------------~r~lt~~ei~~qi~~~~~~~--~i~~Ivf~GmGEPlln~~~l~~~i~~l~~~g~~i~ 196 (375)
.+.++.+++++.+.....+. ...+|+|+| ||||++++.+.++++.+++.|
T Consensus 80 ~~~~C~~Cg~C~~~CP~~Ai~~~g~~~t~eel~~~i~~~~~~~~~~~~~V~~sG-GEPll~~~~l~~l~~~~k~~g---- 154 (295)
T TIGR02494 80 RREKCTHCGKCTEACPSGALSIVGEEMTVEEVMRVVLRDSIFYRNSGGGVTLSG-GEPLLQPEFALALLQACHERG---- 154 (295)
T ss_pred chhhcCchhHhhccCcHhHHhhhccCCcHHHHHHHHHHHHHhcccCCCcEEeeC-cchhchHHHHHHHHHHHHHcC----
Confidence 12357788887776543322 346899999 999999887889999999877
Q ss_pred CCeEEEEeCCchh--hHHHHhhhCCCce-EEEEecCCCHHHHhhhcCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEEeeC
Q 017203 197 PKRITVSTVGIVH--AINKFHSDLPGLN-LAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLD 273 (375)
Q Consensus 197 ~~~itisTnG~~~--~i~~l~~~~~~v~-laiSL~a~~~~~r~~i~p~~~~~~~~~vl~~l~~~~~~~g~~v~i~~vli~ 273 (375)
.++++.|||+.+ .+.++.. .++ +.+|+++.+++.|+++.+ .+++.++++++ ++.+.+.++.+++++++
T Consensus 155 -~~~~i~TnG~~~~~~~~~ll~---~~d~~~isl~~~~~~~~~~~~g----~~~~~vl~~i~-~l~~~~~~~~i~~~~v~ 225 (295)
T TIGR02494 155 -IHTAVETSGFTPWETIEKVLP---YVDLFLFDIKHLDDERHKEVTG----VDNEPILENLE-ALAAAGKNVVIRIPVIP 225 (295)
T ss_pred -CcEeeeCCCCCCHHHHHHHHh---hCCEEEEeeccCChHHHHHHhC----CChHHHHHHHH-HHHhCCCcEEEEeceeC
Confidence 469999999864 2344443 234 568999999999999865 35789999995 45677899999999999
Q ss_pred CCCCCHHHHHHHHHHHhcCC--C-EEEEeecCCCCC-----------CCCCCCCcHHHHHHHHHHHHhcCC
Q 017203 274 GVNDEEQHAHQLGKLLETFQ--V-VVNLIPFNPIGS-----------VSQFRTSSDDKVSSFQKILRGSYN 330 (375)
Q Consensus 274 gvND~~e~~~~L~~~l~~~~--~-~vnLip~np~~~-----------~~~~~~~s~e~i~~f~~~l~~~~G 330 (375)
++||+.++++++++|+++++ + .++|+||+|.+. ..+++.|+.++++++++.++ +.|
T Consensus 226 ~~n~~~~ei~~l~~~~~~~~~~v~~v~l~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~-~~g 295 (295)
T TIGR02494 226 GFNDSEENIEAIAAFLRKLEPGVDEIDLLPYHRLGENKYRQLGREYPDSEIPDPAEEQLLELKEIFE-SKG 295 (295)
T ss_pred CcCCCHHHHHHHHHHHHHhccCCceEEecCCCchhHHHHHHhCCCCccCCCCCCCHHHHHHHHHHHH-hcC
Confidence 99999999999999999987 3 699999999751 22345799999999999987 444
No 26
>PRK00164 moaA molybdenum cofactor biosynthesis protein A; Reviewed
Probab=99.93 E-value=1.2e-24 Score=212.73 Aligned_cols=201 Identities=18% Similarity=0.242 Sum_probs=158.2
Q ss_pred eEEEEeecCCCCCcCccccCCCC----CcccCCCHHHHHHHHHHhhhhCCcceEEEEeCCCcccCHHHHHHHHHHhhCCC
Q 017203 117 STLCISSQVGCKMGCNFCATGTM----GFKSNLSSGEIVEQLVHASRLSNIRNVVFMGMGEPLNNYAALVEAVRIMTGLP 192 (375)
Q Consensus 117 ~tl~vssq~GCnl~C~fC~~~~~----~~~r~lt~~ei~~qi~~~~~~~~i~~Ivf~GmGEPlln~~~l~~~i~~l~~~g 192 (375)
..++++.+.+||++|.||+.+.. ...+.++.+++.+.+..+.. .++..|.|+| ||||+++ ++.++++.+++.+
T Consensus 17 ~~l~i~vT~~Cnl~C~yC~~~~~~~~~~~~~~ls~eei~~~i~~~~~-~gi~~I~~tG-GEPll~~-~l~~li~~i~~~~ 93 (331)
T PRK00164 17 TYLRISVTDRCNFRCTYCMPEGYLPFLPKEELLSLEEIERLVRAFVA-LGVRKVRLTG-GEPLLRK-DLEDIIAALAALP 93 (331)
T ss_pred CeEEEEEcCCcCcCCCCCCCccCCCCCCccccCCHHHHHHHHHHHHH-CCCCEEEEEC-CCCcCcc-CHHHHHHHHHhcC
Confidence 47889999999999999998652 34567999999998876655 3789999999 9999995 6889999998762
Q ss_pred CCCCCCeEEEEeCCchh--hHHHHhhhCCCceEEEEecCCCHHHHhhhcCCCCCCCHHHHHHHHHHHHHhcCC-cEEEEE
Q 017203 193 FQVSPKRITVSTVGIVH--AINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQ-KIFIEY 269 (375)
Q Consensus 193 ~~i~~~~itisTnG~~~--~i~~l~~~~~~v~laiSL~a~~~~~r~~i~p~~~~~~~~~vl~~l~~~~~~~g~-~v~i~~ 269 (375)
+...++++|||+.. .+.+|.+.+. ..+.||||+.+++.+..+.+ ..++++++++++.+ .+.|. ++.+++
T Consensus 94 ---~~~~i~itTNG~ll~~~~~~L~~agl-~~i~ISlds~~~e~~~~i~~---~~~~~~vl~~i~~~-~~~g~~~v~i~~ 165 (331)
T PRK00164 94 ---GIRDLALTTNGYLLARRAAALKDAGL-DRVNVSLDSLDPERFKAITG---RDRLDQVLAGIDAA-LAAGLTPVKVNA 165 (331)
T ss_pred ---CCceEEEEcCchhHHHHHHHHHHcCC-CEEEEEeccCCHHHhccCCC---CCCHHHHHHHHHHH-HHCCCCcEEEEE
Confidence 12579999999752 3556666543 57999999999999998854 46899999999655 56676 899999
Q ss_pred EeeCCCCCCHHHHHHHHHHHhcCCCEEEEeecCCCCCCCCCCCCcHHHHHHHHHHHHhcCCc
Q 017203 270 IMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNI 331 (375)
Q Consensus 270 vli~gvND~~e~~~~L~~~l~~~~~~vnLip~np~~~~~~~~~~s~e~i~~f~~~l~~~~Gi 331 (375)
++++|+|+ +++.++++++++.++.+++++|+|.+....|........+++.+.|+ ++|+
T Consensus 166 vv~~g~n~--~ei~~l~~~~~~~gv~v~~ie~~p~~~~~~~~~~~~~~~~~~~~~l~-~~~~ 224 (331)
T PRK00164 166 VLMKGVND--DEIPDLLEWAKDRGIQLRFIELMPTGEGNEWFRKHHLSGAEIRARLA-ERGW 224 (331)
T ss_pred EEECCCCH--HHHHHHHHHHHhCCCeEEEEEeeECCCCcchhhhcCCCHHHHHHHHH-hccC
Confidence 99999987 68999999999999999999999985433443333445566666666 4433
No 27
>PRK10076 pyruvate formate lyase II activase; Provisional
Probab=99.93 E-value=1.5e-24 Score=198.69 Aligned_cols=179 Identities=12% Similarity=0.192 Sum_probs=151.2
Q ss_pred ccCCCHHHHHHHHHHhhhhCC--cceEEEEeCCCcccCHHHHHHHHHHhhCCCCCCCCCeEEEEeCCchh--hHHHHhhh
Q 017203 142 KSNLSSGEIVEQLVHASRLSN--IRNVVFMGMGEPLNNYAALVEAVRIMTGLPFQVSPKRITVSTVGIVH--AINKFHSD 217 (375)
Q Consensus 142 ~r~lt~~ei~~qi~~~~~~~~--i~~Ivf~GmGEPlln~~~l~~~i~~l~~~g~~i~~~~itisTnG~~~--~i~~l~~~ 217 (375)
++.+|++|+++.+.+.+.+.. -.+|+||| |||+++++++.++++.+++.| .+++|.|||+.+ .++++..
T Consensus 16 g~~~t~eel~~~~~~~~~f~~~sggGVt~SG-GEPllq~~fl~~l~~~~k~~g-----i~~~leTnG~~~~~~~~~l~~- 88 (213)
T PRK10076 16 GRDITLDALEREVMKDDIFFRTSGGGVTLSG-GEVLMQAEFATRFLQRLRLWG-----VSCAIETAGDAPASKLLPLAK- 88 (213)
T ss_pred CcccCHHHHHHHHHhhhHhhcCCCCEEEEeC-chHHcCHHHHHHHHHHHHHcC-----CCEEEECCCCCCHHHHHHHHH-
Confidence 456999999999988765432 36999999 999999999999999999888 689999999876 2344443
Q ss_pred CCCce-EEEEecCCCHHHHhhhcCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEEeeCCCCCCHHHHHHHHHHHhcCCC-E
Q 017203 218 LPGLN-LAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQV-V 295 (375)
Q Consensus 218 ~~~v~-laiSL~a~~~~~r~~i~p~~~~~~~~~vl~~l~~~~~~~g~~v~i~~vli~gvND~~e~~~~L~~~l~~~~~-~ 295 (375)
.++ +.+++++.+++.|+++++ .+.+.+++++ +++.+.|.+++++++++||+||++++++++++|++++++ .
T Consensus 89 --~~D~~l~DiK~~d~~~~~~~tG----~~~~~il~nl-~~l~~~g~~v~iR~~vIPg~nd~~e~i~~ia~~l~~l~~~~ 161 (213)
T PRK10076 89 --LCDEVLFDLKIMDATQARDVVK----MNLPRVLENL-RLLVSEGVNVIPRLPLIPGFTLSRENMQQALDVLIPLGIKQ 161 (213)
T ss_pred --hcCEEEEeeccCCHHHHHHHHC----CCHHHHHHHH-HHHHhCCCcEEEEEEEECCCCCCHHHHHHHHHHHHHcCCce
Confidence 345 568999999999999975 4689999999 456788999999999999999999999999999998865 5
Q ss_pred EEEeecCCCC-----------CCCCCCCCcHHHHHHHHHHHHhcCCceEEe
Q 017203 296 VNLIPFNPIG-----------SVSQFRTSSDDKVSSFQKILRGSYNIRTTV 335 (375)
Q Consensus 296 vnLip~np~~-----------~~~~~~~~s~e~i~~f~~~l~~~~Gi~v~v 335 (375)
++|+||+|.+ +..+.++|+.+.+++++++++ +.|+++++
T Consensus 162 ~~llpyh~~g~~Ky~~lg~~y~~~~~~~~~~~~l~~~~~~~~-~~gl~~~i 211 (213)
T PRK10076 162 IHLLPFHQYGEPKYRLLGKTWSMKEVPAPSSADVATMREMAE-RAGFQVTV 211 (213)
T ss_pred EEEecCCccchhHHHHcCCcCccCCCCCcCHHHHHHHHHHHH-HcCCeEEe
Confidence 9999999964 233456889999999999999 79999876
No 28
>PRK13762 tRNA-modifying enzyme; Provisional
Probab=99.91 E-value=6.2e-23 Score=199.34 Aligned_cols=198 Identities=20% Similarity=0.232 Sum_probs=154.8
Q ss_pred CCCCCcCccccCCCCCc-------ccCCCHHHHHHHHHHhhh-----hC--------------CcceEEEEeCCCcccCH
Q 017203 125 VGCKMGCNFCATGTMGF-------KSNLSSGEIVEQLVHASR-----LS--------------NIRNVVFMGMGEPLNNY 178 (375)
Q Consensus 125 ~GCnl~C~fC~~~~~~~-------~r~lt~~ei~~qi~~~~~-----~~--------------~i~~Ivf~GmGEPlln~ 178 (375)
.|||++|.||+++.... ....+++||++++..... +. ..+++.|+|.||||+++
T Consensus 66 ~~C~~rC~fC~r~~~~~~~~~~~~~~~~~peeiv~~~~~~~~~~i~g~~g~~~v~~~~~~ea~~~~~v~iSl~GEPlL~p 145 (322)
T PRK13762 66 AWCNQRCLFCWRPLEEDVGLELKEPEWDDPEEIVEESIKEQRKLLSGYKGNPKVDREKFEEAMEPKHVAISLSGEPTLYP 145 (322)
T ss_pred HHHhccCceeeccCCCCcccccCCCCCCCHHHHHHHHHHHHHHHhhccCCCCCCCHHHhhhccCCCEEEEeCCccccchh
Confidence 57999999999964322 346789999999976521 11 24679999889999985
Q ss_pred HHHHHHHHHhhCCCCCCCCCeEEEEeCCchhh-HHHHhhhCCCceEEEEecCCCHHHHhhhcCCCCCCCHHHHHHHHHHH
Q 017203 179 AALVEAVRIMTGLPFQVSPKRITVSTVGIVHA-INKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEY 257 (375)
Q Consensus 179 ~~l~~~i~~l~~~g~~i~~~~itisTnG~~~~-i~~l~~~~~~v~laiSL~a~~~~~r~~i~p~~~~~~~~~vl~~l~~~ 257 (375)
++.++++.+++.| .++.|.|||+.+. +++| ... ...+.||||+++++.+.++.+.....+++.++++++ +
T Consensus 146 -~l~eli~~~k~~G-----i~~~L~TNG~~~e~l~~L-~~~-~d~i~VSLda~~~e~~~~i~~~~~~~~~~~vl~~L~-~ 216 (322)
T PRK13762 146 -YLPELIEEFHKRG-----FTTFLVTNGTRPDVLEKL-EEE-PTQLYVSLDAPDEETYKKINRPVIPDAWERILETLE-L 216 (322)
T ss_pred -hHHHHHHHHHHcC-----CCEEEECCCCCHHHHHHH-Hhc-CCEEEEEccCCCHHHHHHHhCCCCCCcHHHHHHHHH-H
Confidence 7999999999887 4699999998763 4555 333 357899999999999999975322468999999995 5
Q ss_pred HHhcCCcEEEEEEeeCCCCCCHHHHHHHHHHHhcCCC-EEEEeecCCCCCCC----CCCCCcHHHHHHHHHHHHhcCCce
Q 017203 258 QKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQV-VVNLIPFNPIGSVS----QFRTSSDDKVSSFQKILRGSYNIR 332 (375)
Q Consensus 258 ~~~~g~~v~i~~vli~gvND~~e~~~~L~~~l~~~~~-~vnLip~np~~~~~----~~~~~s~e~i~~f~~~l~~~~Gi~ 332 (375)
+.+.+.++.+++++++|+||++.+ +++++++..++ .|.+.||++.+... .-..|+.+++.+|.+.+.+..|..
T Consensus 217 l~~~~~~~~ir~tlv~g~Nd~e~~--~~a~l~~~~~~~~Iel~~y~~~G~~k~~l~~~~~p~~eev~~~~~~l~~~~~~~ 294 (322)
T PRK13762 217 LPSKKTRTVIRITLVKGYNMHDPE--GFAKLIERANPDFVEVKAYMHVGYSRNRLTRDNMPSHEEVREFAKELAEYTGYE 294 (322)
T ss_pred HHhCCCCEEEEEEEECCcCccHHH--HHHHHHHHcCCCEEEEECCeECCCccccccccCCcCHHHHHHHHHHHHHhcCCe
Confidence 667788999999999999998655 99999998876 58999999986321 123588999999999998433554
Q ss_pred E
Q 017203 333 T 333 (375)
Q Consensus 333 v 333 (375)
+
T Consensus 295 i 295 (322)
T PRK13762 295 I 295 (322)
T ss_pred E
Confidence 3
No 29
>TIGR03821 AblA_like_1 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in E. coli, Buchnera, Yersinia, etc.
Probab=99.90 E-value=9.1e-23 Score=198.18 Aligned_cols=231 Identities=19% Similarity=0.328 Sum_probs=155.6
Q ss_pred EeCCCCCeEEEEEEecCCCeEEEEEeeecCCCCCCCCCCCCCCCceEEEEeecCCCCCcCccccCCCCCcccC-CCHHHH
Q 017203 72 VDSSDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSN-LSSGEI 150 (375)
Q Consensus 72 ~~s~dg~t~k~l~~~~dg~~ve~v~i~~~~~~~~~~g~~~~~~~r~tl~vssq~GCnl~C~fC~~~~~~~~r~-lt~~ei 150 (375)
..+.|| +.|++++..|+..||+|+++|. .| ++|+ +|.|||++|+||++......++ ++.+ .
T Consensus 68 ~~~~~~-~~~d~~~~~~~~~v~gl~hkY~--------------~r-~l~~-~t~~Cn~~Cr~C~~~~~~~~~~~~~~~-~ 129 (321)
T TIGR03821 68 FEQHPG-YSADPLDEQDANPVPGLLHKYH--------------GR-VLLI-VTGGCAINCRYCFRRHFPYQENQPNKA-Q 129 (321)
T ss_pred hccCCC-cCCCchhhcCCCcCCeeeeecC--------------CE-EEEE-eCCCcCCcCcCCCCCCcCCCCCCCCHH-H
Confidence 456778 8999999999999999999986 34 5666 7799999999999976555443 4444 4
Q ss_pred HHH-HHHhhhhCCcceEEEEeCCCcccCHHH-HHHHHHHhhCCCCCCCCCeEEEEe-------CCchhh-HHHHhhhCCC
Q 017203 151 VEQ-LVHASRLSNIRNVVFMGMGEPLNNYAA-LVEAVRIMTGLPFQVSPKRITVST-------VGIVHA-INKFHSDLPG 220 (375)
Q Consensus 151 ~~q-i~~~~~~~~i~~Ivf~GmGEPlln~~~-l~~~i~~l~~~g~~i~~~~itisT-------nG~~~~-i~~l~~~~~~ 220 (375)
+++ +..+....++.+|+||| ||||++++. +.++++.+..... + ..+.|.| |-+.+. ++.|.+....
T Consensus 130 ~~~~i~~i~~~~~i~~VvltG-GEPL~~~d~~L~~ll~~l~~i~~-~--~~iri~tr~~~~~p~rit~el~~~L~~~~~~ 205 (321)
T TIGR03821 130 WKEALEYIAQHPEINEVILSG-GDPLMAKDHRLDWLLNLLEQIPH-L--KRLRIHTRLPVVIPDRITSGLCDLLANSRLQ 205 (321)
T ss_pred HHHHHHHHHhcCCCCEEEEeC-cccccCCchHHHHHHHHHHhCCC-C--cEEEEecCcceeeHHHhhHHHHHHHHhcCCc
Confidence 444 44444445789999999 999998754 6677766654310 0 2344454 312222 2334333222
Q ss_pred ceEEEEecCCCHHHHhhhcCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEEeeCCCCCCHHHHHHHHHHHhcCCCE-EEEe
Q 017203 221 LNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVV-VNLI 299 (375)
Q Consensus 221 v~laiSL~a~~~~~r~~i~p~~~~~~~~~vl~~l~~~~~~~g~~v~i~~vli~gvND~~e~~~~L~~~l~~~~~~-vnLi 299 (375)
.-+.+|++++. +.+ +.+.++++ .+++.|..+.+++++++|+||+.+++.+|.+++..+++. +.+.
T Consensus 206 ~~~~~h~dh~~-Ei~------------d~~~~ai~-~L~~~Gi~v~~qtvllkgiNDn~~~l~~L~~~l~~~gv~pyyl~ 271 (321)
T TIGR03821 206 TVLVVHINHAN-EID------------AEVADALA-KLRNAGITLLNQSVLLRGVNDNADTLAALSERLFDAGVLPYYLH 271 (321)
T ss_pred EEEEeeCCChH-hCc------------HHHHHHHH-HHHHcCCEEEecceeeCCCCCCHHHHHHHHHHHHHcCCeeCccc
Confidence 22346888774 432 34666774 567899999999999999999999999999999999874 6677
Q ss_pred ecCCCCCCCCCCCCcHHHHHHHHHHHHh---cCCceEEeccCC
Q 017203 300 PFNPIGSVSQFRTSSDDKVSSFQKILRG---SYNIRTTVRKQM 339 (375)
Q Consensus 300 p~np~~~~~~~~~~s~e~i~~f~~~l~~---~~Gi~v~vR~~~ 339 (375)
.+.|.+....|.. +.++..++.+.++. .+.++..++...
T Consensus 272 ~~~p~gg~~~f~v-~~~~~~~i~~~l~~~~sG~~~P~~v~d~p 313 (321)
T TIGR03821 272 LLDKVQGAAHFDV-DDERARALMAELLARLPGYLVPRLVREIP 313 (321)
T ss_pred ccCCCCCcccccC-CHHHHHHHHHHHHHhCCCCccceeEEEcC
Confidence 7788854344544 45455554444431 244455666433
No 30
>PLN02951 Molybderin biosynthesis protein CNX2
Probab=99.89 E-value=9.4e-22 Score=194.88 Aligned_cols=176 Identities=18% Similarity=0.270 Sum_probs=142.4
Q ss_pred ceEEEEeecCCCCCcCccccCCCCC----cccCCCHHHHHHHHHHhhhhCCcceEEEEeCCCcccCHHHHHHHHHHhhCC
Q 017203 116 RSTLCISSQVGCKMGCNFCATGTMG----FKSNLSSGEIVEQLVHASRLSNIRNVVFMGMGEPLNNYAALVEAVRIMTGL 191 (375)
Q Consensus 116 r~tl~vssq~GCnl~C~fC~~~~~~----~~r~lt~~ei~~qi~~~~~~~~i~~Ivf~GmGEPlln~~~l~~~i~~l~~~ 191 (375)
...+.++.+.+||++|.||+.+... ....++.+|+.+.+..+.. .++..|.|+| ||||+++ .+.++++.+++.
T Consensus 57 ~~~lrisvT~~CNlrC~yC~~~~~~~~~~~~~~ls~eei~~~i~~~~~-~Gv~~I~~tG-GEPllr~-dl~eli~~l~~~ 133 (373)
T PLN02951 57 HNYLRISLTERCNLRCQYCMPEEGVELTPKSHLLSQDEIVRLAGLFVA-AGVDKIRLTG-GEPTLRK-DIEDICLQLSSL 133 (373)
T ss_pred ccEEEEEEcCCcCcCCCCCCCCcCCCCCCccccCCHHHHHHHHHHHHH-CCCCEEEEEC-CCCcchh-hHHHHHHHHHhc
Confidence 4578999999999999999875321 1245899999888766554 4688999999 9999986 588999999876
Q ss_pred -CCCCCCCeEEEEeCCchh--hHHHHhhhCCCceEEEEecCCCHHHHhhhcCCCCCCCHHHHHHHHHHHHHhcCC-cEEE
Q 017203 192 -PFQVSPKRITVSTVGIVH--AINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQ-KIFI 267 (375)
Q Consensus 192 -g~~i~~~~itisTnG~~~--~i~~l~~~~~~v~laiSL~a~~~~~r~~i~p~~~~~~~~~vl~~l~~~~~~~g~-~v~i 267 (375)
|+ ..++++|||++. .+.+|.+.+. ..+.||||+.+++.+..+.+. ..+++++++++.+ .+.|. ++.+
T Consensus 134 ~gi----~~i~itTNG~lL~~~~~~L~~aGl-d~VnISLDsl~~e~~~~itr~---~~~~~vl~~I~~a-~~~G~~~vki 204 (373)
T PLN02951 134 KGL----KTLAMTTNGITLSRKLPRLKEAGL-TSLNISLDTLVPAKFEFLTRR---KGHDRVLESIDTA-IELGYNPVKV 204 (373)
T ss_pred CCC----ceEEEeeCcchHHHHHHHHHhCCC-CeEEEeeccCCHHHHHHHhcC---CCHHHHHHHHHHH-HHcCCCcEEE
Confidence 52 358999999753 4566766542 569999999999999998642 3579999999655 45664 7999
Q ss_pred EEEeeCCCCCCHHHHHHHHHHHhcCCCEEEEeecCCCC
Q 017203 268 EYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIG 305 (375)
Q Consensus 268 ~~vli~gvND~~e~~~~L~~~l~~~~~~vnLip~np~~ 305 (375)
++++++|+|+ +++.++++++++.++.+.++.|.|.+
T Consensus 205 n~vv~~g~N~--~Ei~~li~~a~~~gi~vr~ie~mP~~ 240 (373)
T PLN02951 205 NCVVMRGFND--DEICDFVELTRDKPINVRFIEFMPFD 240 (373)
T ss_pred EEEecCCCCH--HHHHHHHHHHHhCCCeEEEEEcccCC
Confidence 9999999987 57999999999999999999999985
No 31
>COG2896 MoaA Molybdenum cofactor biosynthesis enzyme [Coenzyme metabolism]
Probab=99.89 E-value=7.5e-22 Score=188.76 Aligned_cols=177 Identities=20% Similarity=0.316 Sum_probs=147.4
Q ss_pred ceEEEEeecCCCCCcCccccCCC-CCcc---cCCCHHHHHHHHHHhhhhCCcceEEEEeCCCcccCHHHHHHHHHHhhCC
Q 017203 116 RSTLCISSQVGCKMGCNFCATGT-MGFK---SNLSSGEIVEQLVHASRLSNIRNVVFMGMGEPLNNYAALVEAVRIMTGL 191 (375)
Q Consensus 116 r~tl~vssq~GCnl~C~fC~~~~-~~~~---r~lt~~ei~~qi~~~~~~~~i~~Ivf~GmGEPlln~~~l~~~i~~l~~~ 191 (375)
...+-+|.+-.||++|.||+... ..+. ..||++||..-+..+.. .++..|-++| ||||+. +++.++++.+++.
T Consensus 10 ~~~LRiSvTdrCNfrC~YCm~eg~~~~~~~~~~Ls~eei~~~~~~~~~-~Gv~kvRlTG-GEPllR-~dl~eIi~~l~~~ 86 (322)
T COG2896 10 VRYLRISVTDRCNFRCTYCMPEGPLAFLPKEELLSLEEIRRLVRAFAE-LGVEKVRLTG-GEPLLR-KDLDEIIARLARL 86 (322)
T ss_pred eceEEEEEecCcCCcccccCCCCCcccCcccccCCHHHHHHHHHHHHH-cCcceEEEeC-CCchhh-cCHHHHHHHHhhc
Confidence 45677888899999999999854 3333 26899999988887766 6799999999 999998 5799999999875
Q ss_pred CCCCCCCeEEEEeCCchh--hHHHHhhhCCCceEEEEecCCCHHHHhhhcCCCCCCCHHHHHHHHHHHHHhcCC-cEEEE
Q 017203 192 PFQVSPKRITVSTVGIVH--AINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQ-KIFIE 268 (375)
Q Consensus 192 g~~i~~~~itisTnG~~~--~i~~l~~~~~~v~laiSL~a~~~~~r~~i~p~~~~~~~~~vl~~l~~~~~~~g~-~v~i~ 268 (375)
++ ..++++|||+.. ...+|.+.+. ..+.||||+.+++.+.+|+.. ..+++|++.++.+. +.|. +|.++
T Consensus 87 ~~----~~islTTNG~~L~~~a~~Lk~AGl-~rVNVSLDsld~e~f~~IT~~---~~~~~Vl~GI~~A~-~~Gl~pVKlN 157 (322)
T COG2896 87 GI----RDLSLTTNGVLLARRAADLKEAGL-DRVNVSLDSLDPEKFRKITGR---DRLDRVLEGIDAAV-EAGLTPVKLN 157 (322)
T ss_pred cc----ceEEEecchhhHHHHHHHHHHcCC-cEEEeecccCCHHHHHHHhCC---CcHHHHHHHHHHHH-HcCCCceEEE
Confidence 32 679999999853 3567777764 679999999999999999754 35999999996654 5565 69999
Q ss_pred EEeeCCCCCCHHHHHHHHHHHhcCCCEEEEeecCCCCC
Q 017203 269 YIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGS 306 (375)
Q Consensus 269 ~vli~gvND~~e~~~~L~~~l~~~~~~vnLip~np~~~ 306 (375)
+|+++|+|| +++..+++|+++.+..+.+|-|.|.+.
T Consensus 158 ~Vv~kgvNd--~ei~~l~e~~~~~~~~lrfIE~m~~g~ 193 (322)
T COG2896 158 TVLMKGVND--DEIEDLLEFAKERGAQLRFIELMPLGE 193 (322)
T ss_pred EEEecCCCH--HHHHHHHHHHhhcCCceEEEEEeecCc
Confidence 999999988 589999999999999999999999863
No 32
>TIGR02668 moaA_archaeal probable molybdenum cofactor biosynthesis protein A, archaeal. This model describes an archaeal family related, and predicted to be functionally equivalent, to molybdenum cofactor biosynthesis protein A (MoaA) of bacteria (see TIGR02666).
Probab=99.89 E-value=1.5e-21 Score=188.44 Aligned_cols=175 Identities=23% Similarity=0.348 Sum_probs=140.7
Q ss_pred eEEEEeecCCCCCcCccccCCCCCc--ccCCCHHHHHHHHHHhhhhCCcceEEEEeCCCcccCHHHHHHHHHHhhCCCCC
Q 017203 117 STLCISSQVGCKMGCNFCATGTMGF--KSNLSSGEIVEQLVHASRLSNIRNVVFMGMGEPLNNYAALVEAVRIMTGLPFQ 194 (375)
Q Consensus 117 ~tl~vssq~GCnl~C~fC~~~~~~~--~r~lt~~ei~~qi~~~~~~~~i~~Ivf~GmGEPlln~~~l~~~i~~l~~~g~~ 194 (375)
.++.++.+.+||++|.||+.+.... .+.++.+++...+..... .++..|.|+| ||||+++ .+.++++.+++.|+
T Consensus 10 ~~l~i~vT~~CNl~C~yC~~~~~~~~~~~~ls~eei~~~i~~~~~-~gi~~I~~tG-GEPll~~-~l~~iv~~l~~~g~- 85 (302)
T TIGR02668 10 TSLRISVTDRCNLSCFYCHMEGEDRSGGNELSPEEIERIVRVASE-FGVRKVKITG-GEPLLRK-DLIEIIRRIKDYGI- 85 (302)
T ss_pred CeEEEEEcccccCCCCCCCccccCCCccCcCCHHHHHHHHHHHHH-cCCCEEEEEC-ccccccc-CHHHHHHHHHhCCC-
Confidence 4678888899999999999864332 356899998776655543 4688999999 9999996 57899999987652
Q ss_pred CCCCeEEEEeCCchh--hHHHHhhhCCCceEEEEecCCCHHHHhhhcCCCCCCCHHHHHHHHHHHHHhcCCc-EEEEEEe
Q 017203 195 VSPKRITVSTVGIVH--AINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQK-IFIEYIM 271 (375)
Q Consensus 195 i~~~~itisTnG~~~--~i~~l~~~~~~v~laiSL~a~~~~~r~~i~p~~~~~~~~~vl~~l~~~~~~~g~~-v~i~~vl 271 (375)
.+++|+|||++. .+.+|.+.+ ...+.||+|+.+++.++.+.+ ..++++++++++.+ .+.|.. +.+++++
T Consensus 86 ---~~v~i~TNG~ll~~~~~~l~~~g-~~~v~iSld~~~~~~~~~i~~---~~~~~~vl~~i~~~-~~~G~~~v~i~~v~ 157 (302)
T TIGR02668 86 ---KDVSMTTNGILLEKLAKKLKEAG-LDRVNVSLDTLDPEKYKKITG---RGALDRVIEGIESA-VDAGLTPVKLNMVV 157 (302)
T ss_pred ---ceEEEEcCchHHHHHHHHHHHCC-CCEEEEEecCCCHHHhhhccC---CCcHHHHHHHHHHH-HHcCCCcEEEEEEE
Confidence 379999999763 234555544 357999999999999998864 45899999999655 566765 9999999
Q ss_pred eCCCCCCHHHHHHHHHHHhcCCCEEEEeecCCCC
Q 017203 272 LDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIG 305 (375)
Q Consensus 272 i~gvND~~e~~~~L~~~l~~~~~~vnLip~np~~ 305 (375)
++|.|+ +++.++++++++.++.+++++|.|.+
T Consensus 158 ~~g~n~--~ei~~~~~~~~~~g~~~~~ie~~p~~ 189 (302)
T TIGR02668 158 LKGIND--NEIPDMVEFAAEGGAILQLIELMPPG 189 (302)
T ss_pred eCCCCH--HHHHHHHHHHHhcCCEEEEEEEeECC
Confidence 998876 67999999999999999999999975
No 33
>PRK13361 molybdenum cofactor biosynthesis protein A; Provisional
Probab=99.89 E-value=1.8e-21 Score=190.11 Aligned_cols=176 Identities=19% Similarity=0.262 Sum_probs=141.8
Q ss_pred EEEEeecCCCCCcCccccCCCCC---cccCCCHHHHHHHHHHhhhhCCcceEEEEeCCCcccCHHHHHHHHHHhhCCCCC
Q 017203 118 TLCISSQVGCKMGCNFCATGTMG---FKSNLSSGEIVEQLVHASRLSNIRNVVFMGMGEPLNNYAALVEAVRIMTGLPFQ 194 (375)
Q Consensus 118 tl~vssq~GCnl~C~fC~~~~~~---~~r~lt~~ei~~qi~~~~~~~~i~~Ivf~GmGEPlln~~~l~~~i~~l~~~g~~ 194 (375)
.+-++.+.+||++|.||+..... ....++.+|+...+..+.. .++..|.|+| ||||+++ .+.++++.+++.+.
T Consensus 15 ~l~i~iT~~CNl~C~yC~~~~~~~~~~~~~ls~eei~~li~~~~~-~Gv~~I~~tG-GEPllr~-dl~~li~~i~~~~~- 90 (329)
T PRK13361 15 YLRLSVTDRCDFRCVYCMSEDPCFLPRDQVLSLEELAWLAQAFTE-LGVRKIRLTG-GEPLVRR-GCDQLVARLGKLPG- 90 (329)
T ss_pred eEEEEecCCccccCCCCCCCCCCcCCccCCCCHHHHHHHHHHHHH-CCCCEEEEEC-cCCCccc-cHHHHHHHHHhCCC-
Confidence 56677789999999999975432 2356999999887766554 4689999999 9999985 68899999987631
Q ss_pred CCCCeEEEEeCCchh--hHHHHhhhCCCceEEEEecCCCHHHHhhhcCCCCCCCHHHHHHHHHHHHHhcCC-cEEEEEEe
Q 017203 195 VSPKRITVSTVGIVH--AINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQ-KIFIEYIM 271 (375)
Q Consensus 195 i~~~~itisTnG~~~--~i~~l~~~~~~v~laiSL~a~~~~~r~~i~p~~~~~~~~~vl~~l~~~~~~~g~-~v~i~~vl 271 (375)
+ ..++++|||++. .+++|.+.+. ..+.||||+.+++.++++.+ ..++++++++++ .+.+.|. ++.+++++
T Consensus 91 l--~~i~itTNG~ll~~~~~~L~~aGl-~~v~ISlDs~~~e~~~~i~~---~g~~~~vl~~i~-~~~~~Gi~~v~in~v~ 163 (329)
T PRK13361 91 L--EELSLTTNGSRLARFAAELADAGL-KRLNISLDTLRPELFAALTR---NGRLERVIAGID-AAKAAGFERIKLNAVI 163 (329)
T ss_pred C--ceEEEEeChhHHHHHHHHHHHcCC-CeEEEEeccCCHHHhhhhcC---CCCHHHHHHHHH-HHHHcCCCceEEEEEE
Confidence 1 368999999753 3456666542 46999999999999999864 457999999995 5567787 89999999
Q ss_pred eCCCCCCHHHHHHHHHHHhcCCCEEEEeecCCCCC
Q 017203 272 LDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGS 306 (375)
Q Consensus 272 i~gvND~~e~~~~L~~~l~~~~~~vnLip~np~~~ 306 (375)
++|.|+ +++.++++|++++++.+.++.|.|.+.
T Consensus 164 ~~g~N~--~ei~~~~~~~~~~gi~~~~ie~mP~g~ 196 (329)
T PRK13361 164 LRGQND--DEVLDLVEFCRERGLDIAFIEEMPLGE 196 (329)
T ss_pred ECCCCH--HHHHHHHHHHHhcCCeEEEEecccCCC
Confidence 999876 689999999999999988999999864
No 34
>TIGR02495 NrdG2 anaerobic ribonucleoside-triphosphate reductase activating protein. This enzyme is a member of the radical-SAM family (pfam04055). It is often gene clustered with the class III (anaerobic) ribonucleotide triphosphate reductase (NrdD, TIGR02487) and presumably fulfills the identical function as NrdG which utilizes S-adenosyl methionine, an iron-sulfur cluster and a reductant (dihydroflavodoxin) to produce a glycine-centered radical in NrdD.
Probab=99.88 E-value=3.1e-21 Score=173.97 Aligned_cols=163 Identities=18% Similarity=0.256 Sum_probs=126.8
Q ss_pred cCCCCCcCccccCCCCCc---ccCCCHHHHHHHHHHhhhhCCcceEEEEeCCCcccCHHHHHHHHHHhhCCCCCCCCCeE
Q 017203 124 QVGCKMGCNFCATGTMGF---KSNLSSGEIVEQLVHASRLSNIRNVVFMGMGEPLNNYAALVEAVRIMTGLPFQVSPKRI 200 (375)
Q Consensus 124 q~GCnl~C~fC~~~~~~~---~r~lt~~ei~~qi~~~~~~~~i~~Ivf~GmGEPlln~~~l~~~i~~l~~~g~~i~~~~i 200 (375)
+.|||++|.||+++.... ...++++++++.+..... .+..|.|+| ||||++++ +.++++.+++.| .++
T Consensus 23 t~~Cnl~C~~C~~~~~~~~~~~~~~~~~~i~~~i~~~~~--~~~~i~~sG-GEPll~~~-l~~li~~~~~~g-----~~v 93 (191)
T TIGR02495 23 FQGCNLKCPYCHNPELIDREGSGEIEVEFLLEFLRSRQG--LIDGVVITG-GEPTLQAG-LPDFLRKVRELG-----FEV 93 (191)
T ss_pred cCCCCCCCCCCCCccccCCCCCCcCCHHHHHHHHHHhcC--CCCeEEEEC-CcccCcHh-HHHHHHHHHHCC-----CeE
Confidence 489999999999974322 346899999998887532 367899999 99999976 999999998876 469
Q ss_pred EEEeCCchhh-HHHHhhhCCCceEEEEecCCCHHHHhhhcCCCCCCCH-HHHHHHHHHHHHhcCCcEEEEEEeeCCCCCC
Q 017203 201 TVSTVGIVHA-INKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPL-EKLMNALKEYQKNSQQKIFIEYIMLDGVNDE 278 (375)
Q Consensus 201 tisTnG~~~~-i~~l~~~~~~v~laiSL~a~~~~~r~~i~p~~~~~~~-~~vl~~l~~~~~~~g~~v~i~~vli~gvND~ 278 (375)
.+.|||+.+. +.++++.+....+.+|+++. ++.+..++...+ .. +++++++ +.+.+.|..+.++++++++.|+
T Consensus 94 ~i~TNg~~~~~l~~l~~~g~~~~v~isl~~~-~~~~~~~~g~~~--~~~~~~~~~i-~~l~~~gi~~~i~~~v~~~~~~- 168 (191)
T TIGR02495 94 KLDTNGSNPRVLEELLEEGLVDYVAMDVKAP-PEKYPELYGLEK--NGSNNILKSL-EILLRSGIPFELRTTVHRGFLD- 168 (191)
T ss_pred EEEeCCCCHHHHHHHHhcCCCcEEEEeccCC-hHHHHHHHCCCC--chHHHHHHHH-HHHHHcCCCEEEEEEEeCCCCC-
Confidence 9999998653 45666543224588999996 566677764322 34 4899999 5667789999999999999998
Q ss_pred HHHHHHHHHHHhcCCCEEEEeec
Q 017203 279 EQHAHQLGKLLETFQVVVNLIPF 301 (375)
Q Consensus 279 ~e~~~~L~~~l~~~~~~vnLip~ 301 (375)
.+++++++++++..+ .+.+.||
T Consensus 169 ~~ei~~~~~~l~~~~-~~~~~~~ 190 (191)
T TIGR02495 169 EEDLAEIATRIKENG-TYVLQPF 190 (191)
T ss_pred HHHHHHHHHHhccCC-cEEeecc
Confidence 789999999999887 4455554
No 35
>TIGR02666 moaA molybdenum cofactor biosynthesis protein A, bacterial. The model for this family describes molybdenum cofactor biosynthesis protein A, or MoaA, as found in bacteria. It does not include the family of probable functional equivalent proteins from the archaea. MoaA works together with MoaC to synthesize precursor Z from guanine.
Probab=99.87 E-value=1.5e-20 Score=183.99 Aligned_cols=176 Identities=23% Similarity=0.337 Sum_probs=140.6
Q ss_pred EEEEeecCCCCCcCccccCCCCC-----cccCCCHHHHHHHHHHhhhhCCcceEEEEeCCCcccCHHHHHHHHHHhhCC-
Q 017203 118 TLCISSQVGCKMGCNFCATGTMG-----FKSNLSSGEIVEQLVHASRLSNIRNVVFMGMGEPLNNYAALVEAVRIMTGL- 191 (375)
Q Consensus 118 tl~vssq~GCnl~C~fC~~~~~~-----~~r~lt~~ei~~qi~~~~~~~~i~~Ivf~GmGEPlln~~~l~~~i~~l~~~- 191 (375)
.+-++.+.+||++|.||+..... ....++.+|+...+..+.. .++..|.|+| ||||+++ .+.++++.+++.
T Consensus 11 ~l~i~vT~~CNl~C~yC~~~~~~~~~~~~~~~ls~eei~~~i~~~~~-~gv~~V~ltG-GEPll~~-~l~~li~~i~~~~ 87 (334)
T TIGR02666 11 YLRISVTDRCNLRCVYCMPEGGGLDFLPKEELLTFEEIERLVRAFVG-LGVRKVRLTG-GEPLLRK-DLVELVARLAALP 87 (334)
T ss_pred eEEEEecCccCcCCCCCCCCcCCCCcCCccCCCCHHHHHHHHHHHHH-CCCCEEEEEC-ccccccC-CHHHHHHHHHhcC
Confidence 55566679999999999986521 2456899999887776654 3689999999 9999985 688999988764
Q ss_pred CCCCCCCeEEEEeCCchh--hHHHHhhhCCCceEEEEecCCCHHHHhhhcCCCCCCCHHHHHHHHHHHHHhcCCc-EEEE
Q 017203 192 PFQVSPKRITVSTVGIVH--AINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQK-IFIE 268 (375)
Q Consensus 192 g~~i~~~~itisTnG~~~--~i~~l~~~~~~v~laiSL~a~~~~~r~~i~p~~~~~~~~~vl~~l~~~~~~~g~~-v~i~ 268 (375)
|+ ..++++|||+.. .+..|.+.+ ...+.||+|+.+++.++++.+ ...++++++++++ .+.+.|.. +.++
T Consensus 88 gi----~~v~itTNG~ll~~~~~~L~~~g-l~~v~ISld~~~~~~~~~i~~--~~~~~~~vl~~i~-~l~~~G~~~v~in 159 (334)
T TIGR02666 88 GI----EDIALTTNGLLLARHAKDLKEAG-LKRVNVSLDSLDPERFAKITR--RGGRLEQVLAGID-AALAAGLEPVKLN 159 (334)
T ss_pred CC----CeEEEEeCchhHHHHHHHHHHcC-CCeEEEecccCCHHHhheeCC--CCCCHHHHHHHHH-HHHHcCCCcEEEE
Confidence 52 279999999853 345666654 257999999999999888853 2358999999995 45677876 9999
Q ss_pred EEeeCCCCCCHHHHHHHHHHHhcCCCEEEEeecCCCCC
Q 017203 269 YIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGS 306 (375)
Q Consensus 269 ~vli~gvND~~e~~~~L~~~l~~~~~~vnLip~np~~~ 306 (375)
+++++|.|+ +++.++++++++.++.+.++.|.|.+.
T Consensus 160 ~vv~~g~n~--~ei~~l~~~~~~~gv~~~~ie~mp~~~ 195 (334)
T TIGR02666 160 TVVMRGVND--DEIVDLAEFAKERGVTLRFIELMPLGE 195 (334)
T ss_pred EEEeCCCCH--HHHHHHHHHHHhcCCeEEEEeccCCCC
Confidence 999999877 679999999999999999999999853
No 36
>TIGR03278 methan_mark_10 putative methanogenesis marker protein 10. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The presence of motifs with seven invariant Cys residues in the N-terminal 50 residues, including three instances of CXXC, would be consistent with function as an oxidoreductase with FeS clusters. The exact function is unknown, but likely is linked to methanogenesis. In most genomes, the member of this family is encoded by a gene next to, and divergently transcribed from, the methyl coenzyme M reductase operon.
Probab=99.84 E-value=2.3e-19 Score=178.47 Aligned_cols=179 Identities=15% Similarity=0.208 Sum_probs=136.2
Q ss_pred cCCCHHHHHHHHHHhhhhC--CcceEEEEeCCCcccCHHHHHHHHHHhhCCCCCCCCCeEEEE-eCCch---h-hHHHHh
Q 017203 143 SNLSSGEIVEQLVHASRLS--NIRNVVFMGMGEPLNNYAALVEAVRIMTGLPFQVSPKRITVS-TVGIV---H-AINKFH 215 (375)
Q Consensus 143 r~lt~~ei~~qi~~~~~~~--~i~~Ivf~GmGEPlln~~~l~~~i~~l~~~g~~i~~~~itis-TnG~~---~-~i~~l~ 215 (375)
+.+|++|+++.+.+...+. ....|+|+|.|||++ ++++.++++.+++.| .++.+. |||.. + .+++++
T Consensus 52 ~~~t~~evl~ev~~d~~~~~~~~ggVtisGGGepl~-~~~l~eLl~~lk~~g-----i~taI~~TnG~~l~~~e~~~~L~ 125 (404)
T TIGR03278 52 DFIPPQVVLGEVQTSLGFRTGRDTKVTISGGGDVSC-YPELEELTKGLSDLG-----LPIHLGYTSGKGFDDPEIAEFLI 125 (404)
T ss_pred CcCCHHHHHHHHHHHHHHhcCCCCEEEEECCccccc-CHHHHHHHHHHHhCC-----CCEEEeCCCCcccCCHHHHHHHH
Confidence 5689999999999876532 468999999456665 578999999999877 568886 99752 2 356777
Q ss_pred hhCCCceEEEEecCCCHHHHhhhcCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEEeeCCCCCCHHHHHHHHHHHhcCCC-
Q 017203 216 SDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQV- 294 (375)
Q Consensus 216 ~~~~~v~laiSL~a~~~~~r~~i~p~~~~~~~~~vl~~l~~~~~~~g~~v~i~~vli~gvND~~e~~~~L~~~l~~~~~- 294 (375)
+... ..+.+|+|+.+++.|+++++.. ..+.++++++.+. + +..+.++.+++||+||+++. .+++++++++++
T Consensus 126 ~~gl-d~v~iSvka~dpe~h~kl~G~~---~a~~ILe~L~~L~-e-~~~v~~~ivlIPGiND~eel-~~ti~~L~~lg~~ 198 (404)
T TIGR03278 126 DNGV-REVSFTVFATDPELRREWMKDP---TPEASLQCLRRFC-E-SCEVHAASVIIPGVNDGDVL-WKTCADLESWGAK 198 (404)
T ss_pred HcCC-CEEEEecccCCHHHHHHHhCCC---CHHHHHHHHHHHH-h-cCCEEEEEEEeCCccCcHHH-HHHHHHHHHCCCC
Confidence 6542 3588999999999999998632 2389999997654 4 47899999999999998655 699999999987
Q ss_pred EEEEeecCCCCCC----------CCCCCCcHHHHHHH-HHHHHhcCCceEEe
Q 017203 295 VVNLIPFNPIGSV----------SQFRTSSDDKVSSF-QKILRGSYNIRTTV 335 (375)
Q Consensus 295 ~vnLip~np~~~~----------~~~~~~s~e~i~~f-~~~l~~~~Gi~v~v 335 (375)
.|.|.||++.+.. .++++++.+++.++ .++.+ ++++.++-
T Consensus 199 ~V~L~~y~~~g~~ky~lg~~~~~~~~~~~~~~e~~~~v~~~~~-~~~i~~~g 249 (404)
T TIGR03278 199 ALILMRFANTEEQGLILGNAPIIPGIKPHTVSEFKNIVRETHK-EFPIRVTG 249 (404)
T ss_pred EEEEEecccccccccccCCcCcccCCCCCCHHHHHHHHHHHHH-HhCCcccC
Confidence 5999999964311 12567788888887 55555 67766543
No 37
>COG0731 Fe-S oxidoreductases [Energy production and conversion]
Probab=99.84 E-value=2.6e-19 Score=169.31 Aligned_cols=199 Identities=22% Similarity=0.299 Sum_probs=153.6
Q ss_pred CCCCcCccccCCCCCc-----ccCCCHHHHHHHHHHhhhh-----CCcceEEEEeCCCcccCHHHHHHHHHHhhCCCCCC
Q 017203 126 GCKMGCNFCATGTMGF-----KSNLSSGEIVEQLVHASRL-----SNIRNVVFMGMGEPLNNYAALVEAVRIMTGLPFQV 195 (375)
Q Consensus 126 GCnl~C~fC~~~~~~~-----~r~lt~~ei~~qi~~~~~~-----~~i~~Ivf~GmGEPlln~~~l~~~i~~l~~~g~~i 195 (375)
-|+++|.||+.|.... ......+.|.+++.....+ ..++.|+|+|-|||+|. +++-++++.+++.|.
T Consensus 33 ~Cs~~CvyC~~G~~~~~~~~~~efi~~~~I~~~~~~~~~~~g~ea~~pd~vtis~~GEPTLy-~~L~elI~~~k~~g~-- 109 (296)
T COG0731 33 WCSYNCVYCWRGRTKKGTPERPEFIVEESILEELKLLLGYKGDEATEPDHVTISLSGEPTLY-PNLGELIEEIKKRGK-- 109 (296)
T ss_pred hhcCCCeEEecccCCCCCCCCCceecHHHHHHHHHHHhcccccccCCCCEEEEeCCCCcccc-cCHHHHHHHHHhcCC--
Confidence 7999999999965432 2346778888888876655 36899999999999997 589999999998862
Q ss_pred CCCeEEEEeCCchhhH-HHHhhhCCCceEEEEecCCCHHHHhhhcCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEEeeCC
Q 017203 196 SPKRITVSTVGIVHAI-NKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDG 274 (375)
Q Consensus 196 ~~~~itisTnG~~~~i-~~l~~~~~~v~laiSL~a~~~~~r~~i~p~~~~~~~~~vl~~l~~~~~~~g~~v~i~~vli~g 274 (375)
..+.|-|||++|.. ++|. ....|.+||+|++.+.+++|..+..+..++++++.+..+......+..+++++++|
T Consensus 110 --~~tflvTNgslpdv~~~L~---~~dql~~sLdA~~~~~~~~InRP~~~~~~e~ile~L~~~~~~~~~~~vir~tlvkg 184 (296)
T COG0731 110 --KTTFLVTNGSLPDVLEELK---LPDQLYVSLDAPDEKTFRRINRPHKKDSWEKILEGLEIFRSEYKGRTVIRTTLVKG 184 (296)
T ss_pred --ceEEEEeCCChHHHHHHhc---cCCEEEEEeccCCHHHHHHhcCCCCcchHHHHHHHHHHhhhcCCCcEEEEEEEecc
Confidence 46899999998643 3333 23568899999999999999877777899999999965543326789999999999
Q ss_pred CCCCHHHHHHHHHHHhcCCC-EEEEeecCCCCCCCCCC-----CCcHHHHHHHHHHHHhcCCceE
Q 017203 275 VNDEEQHAHQLGKLLETFQV-VVNLIPFNPIGSVSQFR-----TSSDDKVSSFQKILRGSYNIRT 333 (375)
Q Consensus 275 vND~~e~~~~L~~~l~~~~~-~vnLip~np~~~~~~~~-----~~s~e~i~~f~~~l~~~~Gi~v 333 (375)
+|++.+++++++++++.... .|.+-.|.-.+ ...+. .|..+++.+|.+.+.+..|+.+
T Consensus 185 ~N~~~e~~~~~a~ll~~~~Pd~velk~~~rpg-as~~~l~~~~~p~~e~~~~f~~~l~~~~~~~~ 248 (296)
T COG0731 185 INDDEEELEEYAELLERINPDFVELKTYMRPG-ASRYRLPRSNMPLHEEVLEFAKELGEELGYEI 248 (296)
T ss_pred ccCChHHHHHHHHHHHhcCCCeEEEecCccCC-hHhhccCccccchhHHHHHHHHHhhcccCeee
Confidence 99999999999999998864 35554433221 22333 6778999999999873335443
No 38
>PRK05301 pyrroloquinoline quinone biosynthesis protein PqqE; Provisional
Probab=99.83 E-value=1.8e-18 Score=172.16 Aligned_cols=195 Identities=14% Similarity=0.157 Sum_probs=146.7
Q ss_pred ceEEEEeecCCCCCcCccccCCCC--CcccCCCHHHHHHHHHHhhhhCCcceEEEEeCCCcccCHHHHHHHHHHhhCCCC
Q 017203 116 RSTLCISSQVGCKMGCNFCATGTM--GFKSNLSSGEIVEQLVHASRLSNIRNVVFMGMGEPLNNYAALVEAVRIMTGLPF 193 (375)
Q Consensus 116 r~tl~vssq~GCnl~C~fC~~~~~--~~~r~lt~~ei~~qi~~~~~~~~i~~Ivf~GmGEPlln~~~l~~~i~~l~~~g~ 193 (375)
...+.+..+..||++|.||+.+.. .....++.+++.+.+..+.. .++..|.|+| ||||+++ .+.++++.+++.|
T Consensus 15 P~~l~i~iT~~CNl~C~~C~~~~~~~~~~~~~~~e~~~~ii~~~~~-~g~~~v~~~G-GEPll~~-~~~~il~~~~~~g- 90 (378)
T PRK05301 15 PLWLLAELTYRCPLQCPYCSNPLDLARHGAELSTEEWIRVLREARA-LGALQLHFSG-GEPLLRK-DLEELVAHARELG- 90 (378)
T ss_pred CeEEEEEecCccCcCCCCCCCccccccccCCCCHHHHHHHHHHHHH-cCCcEEEEEC-CccCCch-hHHHHHHHHHHcC-
Confidence 477778888999999999997532 23457898888777766554 4578999999 9999996 5889999999877
Q ss_pred CCCCCeEEEEeCCchh---hHHHHhhhCCCceEEEEecCCCHHHHhhhcCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEE
Q 017203 194 QVSPKRITVSTVGIVH---AINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYI 270 (375)
Q Consensus 194 ~i~~~~itisTnG~~~---~i~~l~~~~~~v~laiSL~a~~~~~r~~i~p~~~~~~~~~vl~~l~~~~~~~g~~v~i~~v 270 (375)
..+.+.|||++. .++.|.+.+ ...+.|||++.+++.++.+.+. ..+++++++++ +.+++.|.++.+.++
T Consensus 91 ----~~~~i~TNG~ll~~~~~~~L~~~g-~~~v~iSldg~~~e~~d~irg~--~g~f~~~~~~i-~~l~~~g~~v~i~~v 162 (378)
T PRK05301 91 ----LYTNLITSGVGLTEARLAALKDAG-LDHIQLSFQDSDPELNDRLAGT--KGAFAKKLAVA-RLVKAHGYPLTLNAV 162 (378)
T ss_pred ----CcEEEECCCccCCHHHHHHHHHcC-CCEEEEEecCCCHHHHHHHcCC--CchHHHHHHHH-HHHHHCCCceEEEEE
Confidence 468899999752 355666553 2469999999999999988543 24799999999 567788999999998
Q ss_pred eeCCCCCCHHHHHHHHHHHhcCCCE-EEEeecCCCCCC---CCCCCCcHHHHHHHHHHH
Q 017203 271 MLDGVNDEEQHAHQLGKLLETFQVV-VNLIPFNPIGSV---SQFRTSSDDKVSSFQKIL 325 (375)
Q Consensus 271 li~gvND~~e~~~~L~~~l~~~~~~-vnLip~np~~~~---~~~~~~s~e~i~~f~~~l 325 (375)
+.+. +.+++.++++++.++++. +.+.++.+.+.. .....|+.+++.++.+.+
T Consensus 163 v~~~---N~~~i~~~~~~~~~lgv~~i~~~~~~~~g~~~~~~~~~~~~~e~~~~~~~~~ 218 (378)
T PRK05301 163 IHRH---NIDQIPRIIELAVELGADRLELANTQYYGWALLNRAALMPTREQLERAERIV 218 (378)
T ss_pred eecC---CHHHHHHHHHHHHHcCCCEEEEecccccChhhhcccccCCCHHHHHHHHHHH
Confidence 8754 678999999999999875 666655554311 112346677777665544
No 39
>COG2100 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=99.82 E-value=1.9e-18 Score=162.08 Aligned_cols=170 Identities=17% Similarity=0.325 Sum_probs=137.3
Q ss_pred CceEEEEeecCCCCCcCccccCCCCCccc------CCCHHHHHHHHHHhhhhC-CcceEEEEeCCCcccCHHHHHHHHHH
Q 017203 115 PRSTLCISSQVGCKMGCNFCATGTMGFKS------NLSSGEIVEQLVHASRLS-NIRNVVFMGMGEPLNNYAALVEAVRI 187 (375)
Q Consensus 115 ~r~tl~vssq~GCnl~C~fC~~~~~~~~r------~lt~~ei~~qi~~~~~~~-~i~~Ivf~GmGEPlln~~~l~~~i~~ 187 (375)
++..+-|-...|||++|.||.-....+.| ...++.+++.+....++. +--...+-|+|||+++ +.+.++++.
T Consensus 105 GtNviqVRp~tgCnlnCIfCSVdeGp~SrtR~~dy~Vd~eyLl~w~~kVa~~KgkglEaHlDGqGEP~lY-P~l~~lVqa 183 (414)
T COG2100 105 GTNVIQVRPSTGCNLNCIFCSVDEGPYSRTRKLDYVVDPEYLLEWFEKVARFKGKGLEAHLDGQGEPLLY-PHLVDLVQA 183 (414)
T ss_pred CceEEEecCCccccceeEEEeccCCcccceeccceEecHHHHHHHHHHHHhhhCCCeEEEecCCCCCccc-hhHHHHHHH
Confidence 35778888889999999999875433322 256777888777765432 2236899999999997 589999999
Q ss_pred hhCC-CCCCCCCeEEEEeCCchh---hHHHHhhhCCCceEEEEecCCCHHHHhhhcCCCCCCCHHHHHHHHHHHHHhcCC
Q 017203 188 MTGL-PFQVSPKRITVSTVGIVH---AINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQ 263 (375)
Q Consensus 188 l~~~-g~~i~~~~itisTnG~~~---~i~~l~~~~~~v~laiSL~a~~~~~r~~i~p~~~~~~~~~vl~~l~~~~~~~g~ 263 (375)
+++. |. ..+++.|||++. .+.+|++.++ ..+.+|+||.|+..-+.+++. +.|+++.+++.+ +++..+++
T Consensus 184 lk~~~~v----~vVSmQTng~~L~~~lv~eLeeAGL-dRiNlSv~aLDpk~Ak~L~G~-~dYdv~kvle~a-E~i~~a~i 256 (414)
T COG2100 184 LKEHKGV----EVVSMQTNGVLLSKKLVDELEEAGL-DRINLSVDALDPKLAKMLAGR-KDYDVKKVLEVA-EYIANAGI 256 (414)
T ss_pred HhcCCCc----eEEEEeeCceeccHHHHHHHHHhCC-ceEEeecccCCHHHHHHhcCc-cccCHHHHHHHH-HHHHhCCC
Confidence 9987 54 469999999763 3577777764 679999999999999888874 569999999999 56677999
Q ss_pred cEEEEEEeeCCCCCCHHHHHHHHHHHhcCCC
Q 017203 264 KIFIEYIMLDGVNDEEQHAHQLGKLLETFQV 294 (375)
Q Consensus 264 ~v~i~~vli~gvND~~e~~~~L~~~l~~~~~ 294 (375)
.+.+.-+++||+|| +++.++++|+.++++
T Consensus 257 dvlIaPv~lPG~ND--~E~~~iIe~A~~iGa 285 (414)
T COG2100 257 DVLIAPVWLPGVND--DEMPKIIEWAREIGA 285 (414)
T ss_pred CEEEeeeecCCcCh--HHHHHHHHHHHHhCC
Confidence 99999999999998 579999999998864
No 40
>TIGR02109 PQQ_syn_pqqE coenzyme PQQ biosynthesis protein E. This model describes coenzyme PQQ biosynthesis protein E, a gene required for the biosynthesis of pyrrolo-quinoline-quinone (coenzyme PQQ). PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases.
Probab=99.81 E-value=3.2e-18 Score=169.07 Aligned_cols=194 Identities=16% Similarity=0.194 Sum_probs=142.1
Q ss_pred eEEEEeecCCCCCcCccccCCCC--CcccCCCHHHHHHHHHHhhhhCCcceEEEEeCCCcccCHHHHHHHHHHhhCCCCC
Q 017203 117 STLCISSQVGCKMGCNFCATGTM--GFKSNLSSGEIVEQLVHASRLSNIRNVVFMGMGEPLNNYAALVEAVRIMTGLPFQ 194 (375)
Q Consensus 117 ~tl~vssq~GCnl~C~fC~~~~~--~~~r~lt~~ei~~qi~~~~~~~~i~~Ivf~GmGEPlln~~~l~~~i~~l~~~g~~ 194 (375)
..+.+..+..||++|.||+++.. .....++.+++.+.+.++.. .++..|+|+| ||||+++ ++.++++.+++.|
T Consensus 7 ~~l~ieiT~~CNl~C~~C~~~~~~~~~~~~l~~e~~~~ii~~~~~-~g~~~v~~~G-GEPll~~-~~~~ii~~~~~~g-- 81 (358)
T TIGR02109 7 LWLLAELTHRCPLQCPYCSNPLELARRKAELTTEEWTDVLTQAAE-LGVLQLHFSG-GEPLARP-DLVELVAHARRLG-- 81 (358)
T ss_pred cEEEEeeccccCcCCCCCCCChhcccccCCCCHHHHHHHHHHHHh-cCCcEEEEeC-ccccccc-cHHHHHHHHHHcC--
Confidence 66777778999999999998532 12356888887776666554 3578899999 9999986 5889999998877
Q ss_pred CCCCeEEEEeCCchh---hHHHHhhhCCCceEEEEecCCCHHHHhhhcCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEEe
Q 017203 195 VSPKRITVSTVGIVH---AINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIM 271 (375)
Q Consensus 195 i~~~~itisTnG~~~---~i~~l~~~~~~v~laiSL~a~~~~~r~~i~p~~~~~~~~~vl~~l~~~~~~~g~~v~i~~vl 271 (375)
.++.+.|||++. .+++|.+.+ ...+.|||++.+++.++++.+. ..++++++++++ .+++.|.++.+.+++
T Consensus 82 ---~~~~l~TNG~ll~~e~~~~L~~~g-~~~v~iSldg~~~e~~d~~rg~--~g~f~~v~~~i~-~l~~~g~~v~v~~vv 154 (358)
T TIGR02109 82 ---LYTNLITSGVGLTEARLDALADAG-LDHVQLSFQGVDEALADRIAGY--KNAFEQKLAMAR-AVKAAGLPLTLNFVI 154 (358)
T ss_pred ---CeEEEEeCCccCCHHHHHHHHhCC-CCEEEEeCcCCCHHHHHHhcCC--ccHHHHHHHHHH-HHHhCCCceEEEEEe
Confidence 468999999752 355666543 2468999999999999887532 347899999994 567889999999988
Q ss_pred eCCCCCCHHHHHHHHHHHhcCCCE-EEEeecCCCCCC---CCCCCCcHHHHHHHHHHH
Q 017203 272 LDGVNDEEQHAHQLGKLLETFQVV-VNLIPFNPIGSV---SQFRTSSDDKVSSFQKIL 325 (375)
Q Consensus 272 i~gvND~~e~~~~L~~~l~~~~~~-vnLip~np~~~~---~~~~~~s~e~i~~f~~~l 325 (375)
.+. +.++++++++++.++++. +.+.+..+.+.. .....|+.++++++.+.+
T Consensus 155 ~~~---N~~~l~~~~~~~~~lg~~~i~~~~~~~~g~~~~~~~~~~p~~~~~~~~~~~~ 209 (358)
T TIGR02109 155 HRH---NIDQIPEIIELAIELGADRVELATTQYYGWALLNRAALMPTRAQLEEATRIV 209 (358)
T ss_pred ccC---CHHHHHHHHHHHHHcCCCEEEEEeeeccCchhcchhhcCCCHHHHHHHHHHH
Confidence 754 678999999999999864 555333332211 112346666666655443
No 41
>TIGR03470 HpnH hopanoid biosynthesis associated radical SAM protein HpnH. The sequences represented by this model are members of the radical SAM superfamily of enzymes (pfam04055). These enzymes utilize an iron-sulfur redox cluster and S-adenosylmethionine to carry out diverse radical mediated reactions. The members of this clade are frequently found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. The linkage between SHC and this radical SAM enzyme is strong; one is nearly always observed in the same genome where the other is found. A hopanoid biosynthesis locus was described in Zymomonas mobilis consisting of the genes HpnA-E and SHC (HpnF). Continuing past SHC are found a phosphorylase enzyme (ZMO0873, i.e. HpnG, TIGR03468) and this radical SAM enzyme (ZMO0874) which we name here HpnH. Granted, in Z. mobilis, HpnH is in a convergent orientation with respect to HpnA-G, but one gene beyond HpnH
Probab=99.80 E-value=9.1e-18 Score=163.29 Aligned_cols=171 Identities=18% Similarity=0.248 Sum_probs=133.6
Q ss_pred eEEEEeecCCCCCcCccccCCCCC---cccCCCHHHHHHHHHHhhhhCCcceEEEEeCCCcccCHHHHHHHHHHhhCCCC
Q 017203 117 STLCISSQVGCKMGCNFCATGTMG---FKSNLSSGEIVEQLVHASRLSNIRNVVFMGMGEPLNNYAALVEAVRIMTGLPF 193 (375)
Q Consensus 117 ~tl~vssq~GCnl~C~fC~~~~~~---~~r~lt~~ei~~qi~~~~~~~~i~~Ivf~GmGEPlln~~~l~~~i~~l~~~g~ 193 (375)
.++.+..+.+||++|.||+.+... ..+.++.+++++.+.. .++..|+|+| ||||+++ ++.++++.+++.|
T Consensus 28 l~l~le~T~~CNL~C~~C~~~~~~~~~~~~~ls~ee~~~~i~e----~g~~~V~i~G-GEPLL~p-dl~eiv~~~~~~g- 100 (318)
T TIGR03470 28 LVLMLEPLFRCNLACAGCGKIQYPAEILKQRLSVEECLRAVDE----CGAPVVSIPG-GEPLLHP-EIDEIVRGLVARK- 100 (318)
T ss_pred CEEEEecccccCcCCcCCCCCcCCCcccccCCCHHHHHHHHHH----cCCCEEEEeC-ccccccc-cHHHHHHHHHHcC-
Confidence 677788889999999999986432 2356899998877654 2467899999 9999996 5899999998776
Q ss_pred CCCCCeEEEEeCCchh--hHHHHhhhCCCceEEEEecCCCHHHHhhhcCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEEe
Q 017203 194 QVSPKRITVSTVGIVH--AINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIM 271 (375)
Q Consensus 194 ~i~~~~itisTnG~~~--~i~~l~~~~~~v~laiSL~a~~~~~r~~i~p~~~~~~~~~vl~~l~~~~~~~g~~v~i~~vl 271 (375)
.++.|.|||++. .+.++.+.. .+.+.||||+.. +.++.+. .....+++++++++ .+++.|.++.+.+++
T Consensus 101 ----~~v~l~TNG~ll~~~~~~l~~~~-~~~i~VSLDG~~-e~hd~~~--~~~g~f~~~l~~I~-~l~~~G~~v~v~~tv 171 (318)
T TIGR03470 101 ----KFVYLCTNALLLEKKLDKFEPSP-YLTFSVHLDGLR-EHHDASV--CREGVFDRAVEAIR-EAKARGFRVTTNTTL 171 (318)
T ss_pred ----CeEEEecCceehHHHHHHHHhCC-CcEEEEEEecCc-hhhchhh--cCCCcHHHHHHHHH-HHHHCCCcEEEEEEE
Confidence 579999999864 344454433 467899999975 6666653 23468999999995 456788899999998
Q ss_pred eCCCCCCHHHHHHHHHHHhcCCC-EEEEeecCCCC
Q 017203 272 LDGVNDEEQHAHQLGKLLETFQV-VVNLIPFNPIG 305 (375)
Q Consensus 272 i~gvND~~e~~~~L~~~l~~~~~-~vnLip~np~~ 305 (375)
+.+ ++.+++.++++++.++|+ .+.+.|..|.+
T Consensus 172 ~~~--~n~~ei~~~~~~~~~lGv~~i~i~p~~~~~ 204 (318)
T TIGR03470 172 FND--TDPEEVAEFFDYLTDLGVDGMTISPGYAYE 204 (318)
T ss_pred eCC--CCHHHHHHHHHHHHHcCCCEEEEecCcccc
Confidence 765 467899999999999998 58888877653
No 42
>COG1313 PflX Uncharacterized Fe-S protein PflX, homolog of pyruvate formate lyase activating proteins [General function prediction only]
Probab=99.76 E-value=5.9e-17 Score=150.28 Aligned_cols=199 Identities=15% Similarity=0.291 Sum_probs=153.5
Q ss_pred CceEEEEeecCCCCCcCccccCCCCC---cccCCCHHHHHHHHHHhhhhCCcceEEEEeCCCcccCHHHHHHHHHHhhCC
Q 017203 115 PRSTLCISSQVGCKMGCNFCATGTMG---FKSNLSSGEIVEQLVHASRLSNIRNVVFMGMGEPLNNYAALVEAVRIMTGL 191 (375)
Q Consensus 115 ~r~tl~vssq~GCnl~C~fC~~~~~~---~~r~lt~~ei~~qi~~~~~~~~i~~Ivf~GmGEPlln~~~l~~~i~~l~~~ 191 (375)
+..|+|+ .||||+|.||+||... .+...+++++.+.+...+. .+..||.|.| |||+.|.+.++++++++...
T Consensus 119 pSgTVFF---sgCnfrCVfCQNwdISq~~~g~~v~~e~La~i~~~~~~-~GakNvN~Vg-g~Ptp~lp~Ile~l~~~~~~ 193 (335)
T COG1313 119 PSGTVFF---SGCNFRCVFCQNWDISQFGIGKEVTPEDLAEIILELRR-HGAKNVNFVG-GDPTPHLPFILEALRYASEN 193 (335)
T ss_pred CCceEEe---cCcceEEEEecCccccccCCCeEecHHHHHHHHHHHHH-hcCcceeecC-CCCCCchHHHHHHHHHHhcC
Confidence 4679999 8999999999998654 4567899998888877665 4689999999 99999999999999999865
Q ss_pred CCCCCCCeEEEEeCCch-hhHHHHhhhCCCceEEEE-ecCCCHHHHhhhcCCCCCCCHHHHHHHHHHHHHhcCCcEEEEE
Q 017203 192 PFQVSPKRITVSTVGIV-HAINKFHSDLPGLNLAVS-LHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEY 269 (375)
Q Consensus 192 g~~i~~~~itisTnG~~-~~i~~l~~~~~~v~laiS-L~a~~~~~r~~i~p~~~~~~~~~vl~~l~~~~~~~g~~v~i~~ 269 (375)
..+..+||++. +...+|.+. .+|+.+. ++-.+++--.++.... .-++-+.+++..... ....+.++.
T Consensus 194 ------iPvvwNSnmY~s~E~l~lL~g--vVDiyL~DfKYgNdeca~kySkvp--~Y~eVv~rn~~~~~~-~~g~~iiRH 262 (335)
T COG1313 194 ------IPVVWNSNMYMSEETLKLLDG--VVDIYLPDFKYGNDECAEKYSKVP--NYWEVVTRNILEAKE-QVGGLIIRH 262 (335)
T ss_pred ------CCEEEecCCccCHHHHHHhhc--cceeeecccccCCHHHHHHhhcCC--chHHHHHHHHHHHHH-hcCceEEEE
Confidence 45899999986 344455543 4788875 8989988777774332 235667778855443 334799999
Q ss_pred EeeCCCCCCHHH-HHHHHHHHhcC---CCEEEEe-ecCCCCCCCCC----CCCcHHHHHHHHHHHHhcCCceE
Q 017203 270 IMLDGVNDEEQH-AHQLGKLLETF---QVVVNLI-PFNPIGSVSQF----RTSSDDKVSSFQKILRGSYNIRT 333 (375)
Q Consensus 270 vli~gvND~~e~-~~~L~~~l~~~---~~~vnLi-p~np~~~~~~~----~~~s~e~i~~f~~~l~~~~Gi~v 333 (375)
+++|| ..++ -..+.+|++.. .+.||++ +|.|.+....| ++++.+++++..++.+ ++|+.-
T Consensus 263 LVlPg---hlecCTkpI~~wiae~~g~~~~vNiM~QY~P~ykA~eypeI~R~lt~eE~e~a~~~a~-~~gl~~ 331 (335)
T COG1313 263 LVLPG---HLECCTKPILRWIAENLGNDVRVNIMFQYRPEYKAEEYPEINRRLTREEYEKALEYAE-KLGLTN 331 (335)
T ss_pred EecCC---chhhccHHHHHHHHHhCCCCeeEEehhhccchhhhhhchhhcccCCHHHHHHHHHHHH-HcCCce
Confidence 99998 4455 67788888865 3568876 69998654455 5778999999999999 788753
No 43
>smart00729 Elp3 Elongator protein 3, MiaB family, Radical SAM. This superfamily contains MoaA, NifB, PqqE, coproporphyrinogen III oxidase, biotin synthase and MiaB families, and includes a representative in the eukaryotic elongator subunit, Elp-3. Some members of the family are methyltransferases.
Probab=99.76 E-value=4e-17 Score=147.00 Aligned_cols=182 Identities=16% Similarity=0.223 Sum_probs=135.4
Q ss_pred EEEEeecCCCCCcCccccCCCCC-cccCCCHHHHHHHHHHhhhhC----CcceEEEEeCCCcccCHH-HHHHHHHHhhCC
Q 017203 118 TLCISSQVGCKMGCNFCATGTMG-FKSNLSSGEIVEQLVHASRLS----NIRNVVFMGMGEPLNNYA-ALVEAVRIMTGL 191 (375)
Q Consensus 118 tl~vssq~GCnl~C~fC~~~~~~-~~r~lt~~ei~~qi~~~~~~~----~i~~Ivf~GmGEPlln~~-~l~~~i~~l~~~ 191 (375)
++++..+.|||++|.||+.+... ..+..+++++.+.+....... .+..+.|+| |||+++++ .+.++++.+++.
T Consensus 2 ~~~i~~t~~C~~~C~yC~~~~~~~~~~~~~~e~i~~~~~~~~~~~~~~~~~~~i~~~g-g~~~~~~~~~~~~~~~~~~~~ 80 (216)
T smart00729 2 LALYIITRGCPRRCTFCSFPSARGKLRSRYLEALVREIELLAEKGEKEILVGTVFIGG-GTPTLLSPEQLEELLEAIREI 80 (216)
T ss_pred ccEEEecCchhccCCcCCcCccccchhHHHHHHHHHHHHHHHhcccCCcceeEEEECC-CCCCCCCHHHHHHHHHHHHHh
Confidence 34556669999999999986532 145667888888887763211 246788888 99999875 488888888876
Q ss_pred C-CCCCCCeEEEEeCCch--h-hHHHHhhhCCCceEEEEecCCCHHHHhhhcCCCCCCCHHHHHHHHHHHHHhcCCcEEE
Q 017203 192 P-FQVSPKRITVSTVGIV--H-AINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFI 267 (375)
Q Consensus 192 g-~~i~~~~itisTnG~~--~-~i~~l~~~~~~v~laiSL~a~~~~~r~~i~p~~~~~~~~~vl~~l~~~~~~~g~~v~i 267 (375)
+ .+ ....+++.|||.. + .+++|.+... ..+.+|+++.+++.++.+. ++.++++++++++ .+.+.|. +.+
T Consensus 81 ~~~~-~~~~~~~~tn~~~~~~~~~~~l~~~~~-~~i~isl~~~~~~~~~~~~---~~~~~~~~~~~i~-~~~~~g~-~~v 153 (216)
T smart00729 81 LGLA-DDVEITIETRPGTLTEELLEALKEAGV-NRVSLGVQSGSDEVLKAIN---RGHTVEDVLEAVE-KLREAGP-IKV 153 (216)
T ss_pred CCCC-CCeEEEEEeCcccCCHHHHHHHHHcCC-CeEEEecccCCHHHHHHhc---CCCCHHHHHHHHH-HHHHhCC-cce
Confidence 2 21 1356889999753 2 4567776643 3799999999999998863 3568899999995 4566774 556
Q ss_pred EEEeeCCCC-CCHHHHHHHHHHHhcCCCE-EEEeecCCCCCCC
Q 017203 268 EYIMLDGVN-DEEQHAHQLGKLLETFQVV-VNLIPFNPIGSVS 308 (375)
Q Consensus 268 ~~vli~gvN-D~~e~~~~L~~~l~~~~~~-vnLip~np~~~~~ 308 (375)
.+.+++|++ ++.+++.++++++.+.++. +.+.+|.|. +++
T Consensus 154 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~-~~t 195 (216)
T smart00729 154 STDLIVGLPGETEEDFEETLKLLKELGPDRVSIFPLSPR-PGT 195 (216)
T ss_pred EEeEEecCCCCCHHHHHHHHHHHHHcCCCeEEeeeeeeC-CCC
Confidence 666777776 8899999999999999986 899999887 344
No 44
>TIGR03822 AblA_like_2 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in Rhodopseudomonas, Caulobacter crescentus, Bradyrhizobium, etc.
Probab=99.73 E-value=4.3e-16 Score=151.69 Aligned_cols=187 Identities=18% Similarity=0.227 Sum_probs=134.0
Q ss_pred EeecCCCCCcCccccCCCC-C--cccCCCHHHHHHHHHHhhhhCCcceEEEEeCCCcccC-HHHHHHHHHHhhCCCCCCC
Q 017203 121 ISSQVGCKMGCNFCATGTM-G--FKSNLSSGEIVEQLVHASRLSNIRNVVFMGMGEPLNN-YAALVEAVRIMTGLPFQVS 196 (375)
Q Consensus 121 vssq~GCnl~C~fC~~~~~-~--~~r~lt~~ei~~qi~~~~~~~~i~~Ivf~GmGEPlln-~~~l~~~i~~l~~~g~~i~ 196 (375)
+..+.+||++|+||++... + ....++.+++.+.+..+....++..|+|+| ||||+. .+.+.++++.+++.+.
T Consensus 92 l~vT~~C~~~Cr~C~r~~~~~~~~~~~l~~~e~~~~i~~i~~~~~I~~VilSG-GDPl~~~~~~L~~ll~~l~~i~~--- 167 (321)
T TIGR03822 92 LKPVHVCPVYCRFCFRREMVGPEGLGVLSPAELDAAFAYIADHPEIWEVILTG-GDPLVLSPRRLGDIMARLAAIDH--- 167 (321)
T ss_pred EEecCCCCCcCcCCCchhhcCCcccCcCCHHHHHHHHHHHHhCCCccEEEEeC-CCcccCCHHHHHHHHHHHHhCCC---
Confidence 3345999999999998653 1 124567777777666665445788999999 999985 4578999999987531
Q ss_pred CCeEEEEeCC-----c--hhh-HHHHhhhCCCceEEEEecCCCHHHHhhhcCCCCCCCHHHHHHHHHHHHHhcCCcEEEE
Q 017203 197 PKRITVSTVG-----I--VHA-INKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIE 268 (375)
Q Consensus 197 ~~~itisTnG-----~--~~~-i~~l~~~~~~v~laiSL~a~~~~~r~~i~p~~~~~~~~~vl~~l~~~~~~~g~~v~i~ 268 (375)
...+.+.|++ . .+. ++.|.+.+ ..+.||+|+.++. .+ .+++++++ +.+++.|..+..+
T Consensus 168 v~~iri~Tr~~v~~p~rit~ell~~L~~~g--~~v~i~l~~~h~~---el--------~~~~~~ai-~~L~~~Gi~v~~q 233 (321)
T TIGR03822 168 VKIVRFHTRVPVADPARVTPALIAALKTSG--KTVYVALHANHAR---EL--------TAEARAAC-ARLIDAGIPMVSQ 233 (321)
T ss_pred ccEEEEeCCCcccChhhcCHHHHHHHHHcC--CcEEEEecCCChh---hc--------CHHHHHHH-HHHHHcCCEEEEE
Confidence 1346787754 2 122 34444443 4578999987542 22 27888999 4567899999999
Q ss_pred EEeeCCCCCCHHHHHHHHHHHhcCCCE-EEEeecCCCCCCCCCCCCcHHHHHHHHHHHH
Q 017203 269 YIMLDGVNDEEQHAHQLGKLLETFQVV-VNLIPFNPIGSVSQFRTSSDDKVSSFQKILR 326 (375)
Q Consensus 269 ~vli~gvND~~e~~~~L~~~l~~~~~~-vnLip~np~~~~~~~~~~s~e~i~~f~~~l~ 326 (375)
+++++|+||+.+++.+|.+++...++. +.+..+.|.+ +...-..+.++..++.+.++
T Consensus 234 ~vLl~gvNd~~~~l~~l~~~l~~~gv~pyyl~~~~p~~-g~~~f~~~~~~~~~i~~~l~ 291 (321)
T TIGR03822 234 SVLLRGVNDDPETLAALMRAFVECRIKPYYLHHLDLAP-GTAHFRVTIEEGQALVRALR 291 (321)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHhcCCeeEEEEecCCCC-CcccccCcHHHHHHHHHHHH
Confidence 999999999999999999999999874 6677778874 33333455666666666554
No 45
>PRK13758 anaerobic sulfatase-maturase; Provisional
Probab=99.73 E-value=3.8e-16 Score=154.95 Aligned_cols=192 Identities=15% Similarity=0.255 Sum_probs=123.9
Q ss_pred cCCCCCcCccccCCCCCcc------cCCCHHHHHHHHHH-hhhh-CCcceEEEEeCCCcccCH-HHHHHHHHHhhCCCCC
Q 017203 124 QVGCKMGCNFCATGTMGFK------SNLSSGEIVEQLVH-ASRL-SNIRNVVFMGMGEPLNNY-AALVEAVRIMTGLPFQ 194 (375)
Q Consensus 124 q~GCnl~C~fC~~~~~~~~------r~lt~~ei~~qi~~-~~~~-~~i~~Ivf~GmGEPlln~-~~l~~~i~~l~~~g~~ 194 (375)
+.+||++|.||+++..... ..++. +.++.+.. +... .....|+|+| ||||+++ +.+.++++.+++.|+.
T Consensus 12 t~~CNl~C~yC~~~~~~~~~~~~~~~~m~~-~~~~~~i~~~~~~~~~~~~i~~~G-GEPll~~~~~~~~~~~~~~~~~~~ 89 (370)
T PRK13758 12 SSGCNLKCTYCFYHSLSDNRNVKSYGIMRD-EVLESMVKRVLNEAEGHCSFAFQG-GEPTLAGLEFFEELMELQRKHNYK 89 (370)
T ss_pred CCCcCCCCcccCCcCccccccccccCCCCH-HHHHHHHHHHHhccCCceEEEEEC-CccccCChHHHHHHHHHHHHhccC
Confidence 3799999999998753221 13454 44444432 2221 1345799999 9999994 5567888888765421
Q ss_pred CCCCeEEEEeCCch--hh-HHHHhhhCCCceEEEEecCCCHHHHhhhcCC-CCCCCHHHHHHHHHHHHHhcCCcEEEEEE
Q 017203 195 VSPKRITVSTVGIV--HA-INKFHSDLPGLNLAVSLHAPVQDVRCQIMPA-ARAFPLEKLMNALKEYQKNSQQKIFIEYI 270 (375)
Q Consensus 195 i~~~~itisTnG~~--~~-i~~l~~~~~~v~laiSL~a~~~~~r~~i~p~-~~~~~~~~vl~~l~~~~~~~g~~v~i~~v 270 (375)
--...++|.|||++ +. ++.|.+ . .+.+.||||++ ++.++..-+. +...+++.++++++ .+.+.+.++.+.++
T Consensus 90 ~~~~~~~i~TNG~ll~~~~~~~l~~-~-~~~v~iSlDg~-~~~hd~~R~~~~g~~~f~~v~~~i~-~l~~~~~~~~i~~~ 165 (370)
T PRK13758 90 NLKIYNSLQTNGTLIDESWAKFLSE-N-KFLVGLSMDGP-KEIHNLNRKDCCGLDTFSKVERAAE-LFKKYKVEFNILCV 165 (370)
T ss_pred CCeEEEEEEecCEecCHHHHHHHHH-c-CceEEEeecCC-HHHhccccCCCCCCccHHHHHHHHH-HHHHhCCCceEEEE
Confidence 00124689999976 33 344444 3 35789999998 4666665332 24568999999995 45677888999988
Q ss_pred eeCCCCCCHHHHHHHHHHHhcCCCE-EEEee-cCCCCCCC---CCCCCcHHHHHHHHHHH
Q 017203 271 MLDGVNDEEQHAHQLGKLLETFQVV-VNLIP-FNPIGSVS---QFRTSSDDKVSSFQKIL 325 (375)
Q Consensus 271 li~gvND~~e~~~~L~~~l~~~~~~-vnLip-~np~~~~~---~~~~~s~e~i~~f~~~l 325 (375)
+.+. +.+++.++++++.+.+++ +.+++ +.|.+.+. ++ ..+.++..+|.+.+
T Consensus 166 v~~~---n~~~l~~i~~~~~~~g~~~~~~~~~~~p~~~~~~~~~~-~l~~~~~~~~~~~l 221 (370)
T PRK13758 166 VTSN---TARHVNKIYKYFKEKDFKFLQFINCLDPLYEEKGKYNY-SLKPKDYTKFLKNL 221 (370)
T ss_pred eccc---cccCHHHHHHHHHHcCCCeEeeeeccCccccccCCCcC-ccCHHHHHHHHHHH
Confidence 8875 456899999999998875 55554 35543221 22 23455555554443
No 46
>TIGR00238 KamA family protein. Note that the E. coli homolog was expressed in E. coli and purified and found not to display display lysine 2,3-aminomutase activity. Active site residues are found in 100 residue extension in B. subtilis. Name changed to KamA family protein.
Probab=99.71 E-value=1e-15 Score=149.57 Aligned_cols=202 Identities=18% Similarity=0.300 Sum_probs=126.7
Q ss_pred EEEeecCCCCCcCccccCCCCCcccCC-CHHHHHHHHHHhhhhCCcceEEEEeCCCcccCHH-HHHHHHHHhhCCCCCCC
Q 017203 119 LCISSQVGCKMGCNFCATGTMGFKSNL-SSGEIVEQLVHASRLSNIRNVVFMGMGEPLNNYA-ALVEAVRIMTGLPFQVS 196 (375)
Q Consensus 119 l~vssq~GCnl~C~fC~~~~~~~~r~l-t~~ei~~qi~~~~~~~~i~~Ivf~GmGEPlln~~-~l~~~i~~l~~~g~~i~ 196 (375)
+.+..+.|||++|+||++......... ..+++.+.+.......++..|+|+| ||||+..+ .+.++++.+++.+ .+.
T Consensus 115 vll~~T~gCn~~C~yC~~~~~~~~~~~~~~~~~~~~i~~i~~~~~i~eV~lsG-GDPLl~~d~~L~~ll~~L~~i~-~~~ 192 (331)
T TIGR00238 115 ALFLVKGGCAVNCRYCFRRHFPYKENPGNKKKWQKALDYIAEHPEIIEILISG-GDPLMAKDHELEWLLKRLEEIP-HLV 192 (331)
T ss_pred EEEEeCCCCCCCCcCCCCCCcCCCCCCccHHHHHHHHHHHHhCCCcCEEEEEC-CccccCCHHHHHHHHHHHHhcC-Ccc
Confidence 344456899999999998543222222 2455555555454445688999999 99999764 4778888887642 111
Q ss_pred CCeEEEEeCCchh-----hHHHHhhhCCCceEE-EEecCCCHHHHhhhcCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEE
Q 017203 197 PKRITVSTVGIVH-----AINKFHSDLPGLNLA-VSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYI 270 (375)
Q Consensus 197 ~~~itisTnG~~~-----~i~~l~~~~~~v~la-iSL~a~~~~~r~~i~p~~~~~~~~~vl~~l~~~~~~~g~~v~i~~v 270 (375)
..++...|+++.| .+.++.+.. ...+. ++.....++ + .+++.+++ +.+.+.|..+.++++
T Consensus 193 ~IRi~tr~~~~~P~rit~el~~~L~~~-~~~~~~vsh~nh~~E----i--------~~~~~~ai-~~L~~aGi~v~~qtv 258 (331)
T TIGR00238 193 RLRIGTRLPVVIPQRITDELCELLASF-ELQLMLVTHINHCNE----I--------TEEFAEAM-KKLRTVNVTLLNQSV 258 (331)
T ss_pred EEEeecCCCccCchhcCHHHHHHHHhc-CCcEEEEccCCChHh----C--------CHHHHHHH-HHHHHcCCEEEeecc
Confidence 2344455566543 222222222 23333 443222222 2 15677888 456789999999999
Q ss_pred eeCCCCCCHHHHHHHHHHHhcCCCE-EEEeecCCCCCCCCCCCCcHHHHHHHHHHHHh---cCCceEEecc
Q 017203 271 MLDGVNDEEQHAHQLGKLLETFQVV-VNLIPFNPIGSVSQFRTSSDDKVSSFQKILRG---SYNIRTTVRK 337 (375)
Q Consensus 271 li~gvND~~e~~~~L~~~l~~~~~~-vnLip~np~~~~~~~~~~s~e~i~~f~~~l~~---~~Gi~v~vR~ 337 (375)
+++|+||+.+.+.+|.+.+...++. +.+..+.|.+....|..| .++..++.+.++. .+.++..++.
T Consensus 259 Ll~gvnD~~~~l~~L~~~l~~~gV~pyyl~~~~~~~g~~~f~~~-~~~~~~i~~~l~~~~sG~~~P~~v~~ 328 (331)
T TIGR00238 259 LLRGVNDRAQILAKLSIALFKVGIIPYYLHYLDKVQGAKHFLVP-DAEAAQIVKELARLTSGYLVPKFAVE 328 (331)
T ss_pred eECCcCCCHHHHHHHHHHHhhcCeecCeecCcCCCCCcccccCC-HHHHHHHHHHHHhcCCCCcceeEEec
Confidence 9999999999999999999998874 667777887544556655 4444444444431 2334445553
No 47
>PF04055 Radical_SAM: Radical SAM superfamily; InterPro: IPR007197 Radical SAM proteins catalyze diverse reactions, including unusual methylations, isomerization, sulphur insertion, ring formation, anaerobic oxidation and protein radical formation. Evidence exists that these proteins generate a radical species by reductive cleavage of S:-adenosylmethionine (SAM) through an unusual Fe-S centre [, ].; GO: 0003824 catalytic activity, 0051536 iron-sulfur cluster binding; PDB: 2A5H_D 3T7V_A 3C8F_A 3CB8_A 2FB2_A 2FB3_A 3CIX_A 3IIX_A 3IIZ_A 3CIW_A ....
Probab=99.69 E-value=8.4e-16 Score=132.82 Aligned_cols=156 Identities=20% Similarity=0.302 Sum_probs=114.8
Q ss_pred ecCCCCCcCccccCCCC---CcccCCCHHHHHHHHHHhhhhCCcceEEEEeCCCcccCHHHHHHHHHHhhCCCCCCCCCe
Q 017203 123 SQVGCKMGCNFCATGTM---GFKSNLSSGEIVEQLVHASRLSNIRNVVFMGMGEPLNNYAALVEAVRIMTGLPFQVSPKR 199 (375)
Q Consensus 123 sq~GCnl~C~fC~~~~~---~~~r~lt~~ei~~qi~~~~~~~~i~~Ivf~GmGEPlln~~~l~~~i~~l~~~g~~i~~~~ 199 (375)
++.|||++|.||..+.. .....++.+++.+.+.......++..|.++| |||+++++....+....+..+ ...+
T Consensus 3 ~~~~C~~~C~fC~~~~~~~~~~~~~~~~e~i~~~~~~~~~~~~~~~i~~~~-gep~~~~~~~~~~~~~~~~~~---~~~~ 78 (166)
T PF04055_consen 3 TTRGCNLNCSFCYYPRSRRKNKPREMSPEEILEEIKELKQDKGVKEIFFGG-GEPTLHPDFIELLELLRKIKK---RGIR 78 (166)
T ss_dssp EESEESS--TTTSTTTTCCTCGCEECHHHHHHHHHHHHHHHTTHEEEEEES-STGGGSCHHHHHHHHHHHCTC---TTEE
T ss_pred ECcCcCccCCCCCCCccCCCcccccCCHHHHHHHHHHHhHhcCCcEEEEee-cCCCcchhHHHHHHHHHHhhc---cccc
Confidence 45899999999999863 4456789999999998874223477888888 999999764444444444321 1278
Q ss_pred EEEEeCCchh---hHHHHhhhCCCceEEEEecCCCHH-HHhhhcCCCCCCCHHHHHHHHHHHHHhcCCc-EEEEEEeeCC
Q 017203 200 ITVSTVGIVH---AINKFHSDLPGLNLAVSLHAPVQD-VRCQIMPAARAFPLEKLMNALKEYQKNSQQK-IFIEYIMLDG 274 (375)
Q Consensus 200 itisTnG~~~---~i~~l~~~~~~v~laiSL~a~~~~-~r~~i~p~~~~~~~~~vl~~l~~~~~~~g~~-v~i~~vli~g 274 (375)
+.+.|||..+ .++.+.+.. ...+.+|+++.+++ .++.+. ++.++++++++++ .+.+.|.+ +...++++||
T Consensus 79 i~~~t~~~~~~~~~l~~l~~~~-~~~i~~~l~s~~~~~~~~~~~---~~~~~~~~~~~l~-~l~~~g~~~~~~~i~~~~~ 153 (166)
T PF04055_consen 79 ISINTNGTLLDEELLDELKKLG-VDRIRISLESLDEESVLRIIN---RGKSFERVLEALE-RLKEAGIPRVIIFIVGLPG 153 (166)
T ss_dssp EEEEEESTTHCHHHHHHHHHTT-CSEEEEEEBSSSHHHHHHHHS---STSHHHHHHHHHH-HHHHTTSETEEEEEEEBTT
T ss_pred eeeeccccchhHHHHHHHHhcC-ccEEecccccCCHHHhhhhhc---CCCCHHHHHHHHH-HHHHcCCCcEEEEEEEeCC
Confidence 9999999874 355666654 46799999999998 666653 3568999999995 56677776 8888999998
Q ss_pred CCCCHHHHHHHHHHH
Q 017203 275 VNDEEQHAHQLGKLL 289 (375)
Q Consensus 275 vND~~e~~~~L~~~l 289 (375)
.| .++++++++|+
T Consensus 154 ~~--~~e~~~~~~~i 166 (166)
T PF04055_consen 154 EN--DEEIEETIRFI 166 (166)
T ss_dssp TS--HHHHHHHHHHH
T ss_pred CC--HHHHHHHhCcC
Confidence 65 57899999875
No 48
>cd01335 Radical_SAM Radical SAM superfamily. Enzymes of this family generate radicals by combining a 4Fe-4S cluster and S-adenosylmethionine (SAM) in close proximity. They are characterized by a conserved CxxxCxxC motif, which coordinates the conserved iron-sulfur cluster. Mechanistically, they share the transfer of a single electron from the iron-sulfur cluster to SAM, which leads to its reductive cleavage to methionine and a 5'-deoxyadenosyl radical, which, in turn, abstracts a hydrogen from the appropriately positioned carbon atom. Depending on the enzyme, SAM is consumed during this process or it is restored and reused. Radical SAM enzymes catalyze steps in metabolism, DNA repair, the biosynthesis of vitamins and coenzymes, and the biosynthesis of many antibiotics. Examples are biotin synthase (BioB), lipoyl synthase (LipA), pyruvate formate-lyase (PFL), coproporphyrinogen oxidase (HemN), lysine 2,3-aminomutase (LAM), anaerobic ribonucleotide reductase (ARR), and MoaA, an enzyme o
Probab=99.67 E-value=4e-15 Score=132.13 Aligned_cols=177 Identities=22% Similarity=0.302 Sum_probs=126.5
Q ss_pred ecCCCCCcCccccCCCCCcccCCCHH---HHHHHHHHhhhhCCcceEEEEeCCCcccCHHHHHHHHHHhhCCCCCCCCCe
Q 017203 123 SQVGCKMGCNFCATGTMGFKSNLSSG---EIVEQLVHASRLSNIRNVVFMGMGEPLNNYAALVEAVRIMTGLPFQVSPKR 199 (375)
Q Consensus 123 sq~GCnl~C~fC~~~~~~~~r~lt~~---ei~~qi~~~~~~~~i~~Ivf~GmGEPlln~~~l~~~i~~l~~~g~~i~~~~ 199 (375)
++.|||++|.||+............. ++.+.+.... ......+.|+| |||++++ .+.++++.+++.. ....
T Consensus 3 ~~~~C~~~C~fC~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~g-gep~~~~-~~~~~i~~~~~~~---~~~~ 76 (204)
T cd01335 3 LTRGCNLNCGFCSNPASKGRGPESPPEIEEILDIVLEAK-ERGVEVVILTG-GEPLLYP-ELAELLRRLKKEL---PGFE 76 (204)
T ss_pred cCCccCCcCCCCCCCCCCCCCccccccHHHHHHHHHHHH-hcCceEEEEeC-CcCCccH-hHHHHHHHHHhhC---CCce
Confidence 34899999999999755432222222 3333333332 24567899988 9999997 8999999998762 1267
Q ss_pred EEEEeCCch--h-hHHHHhhhCCCceEEEEecCCCHHHHhhhcCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEEeeCCCC
Q 017203 200 ITVSTVGIV--H-AINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVN 276 (375)
Q Consensus 200 itisTnG~~--~-~i~~l~~~~~~v~laiSL~a~~~~~r~~i~p~~~~~~~~~vl~~l~~~~~~~g~~v~i~~vli~gvN 276 (375)
+.+.|||.. + .+++|++.+ ...+.+|+++.++..+..+. ++..++++++++++.+ .+.+..+.+.+++..+.+
T Consensus 77 ~~i~T~~~~~~~~~~~~l~~~g-~~~i~i~le~~~~~~~~~~~--~~~~~~~~~~~~i~~~-~~~~~~~~~~~i~g~~~~ 152 (204)
T cd01335 77 ISIETNGTLLTEELLKELKELG-LDGVGVSLDSGDEEVADKIR--GSGESFKERLEALKEL-REAGLGLSTTLLVGLGDE 152 (204)
T ss_pred EEEEcCcccCCHHHHHHHHhCC-CceEEEEcccCCHHHHHHHh--cCCcCHHHHHHHHHHH-HHcCCCceEEEEEecCCC
Confidence 999999976 3 456676653 36789999999999988885 3457899999999654 566888888888888766
Q ss_pred CCHHHHHHHHHHHhcCC-C-EEEEeecCCCCCCCCCC
Q 017203 277 DEEQHAHQLGKLLETFQ-V-VVNLIPFNPIGSVSQFR 311 (375)
Q Consensus 277 D~~e~~~~L~~~l~~~~-~-~vnLip~np~~~~~~~~ 311 (375)
+ .+++.+.++++...+ + .+++.+|.|. +++++.
T Consensus 153 ~-~~~~~~~~~~l~~~~~~~~~~~~~~~p~-~~t~~~ 187 (204)
T cd01335 153 D-EEDDLEELELLAEFRSPDRVSLFRLLPE-EGTPLE 187 (204)
T ss_pred h-hHHHHHHHHHHHhhcCcchhhhhhhccc-CCCeee
Confidence 5 466777777776665 4 4778888888 355443
No 49
>TIGR03365 Bsubt_queE 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE. This uncharacterized enzyme, designated QueE, participates in the biosynthesis, from GTP, of 7-cyano-7-deazaguanosine, also called preQ0 because in many species it is a precursor of queuosine. In most Archaea, it is instead the precursor of a different tRNA modified base, archaeosine.
Probab=99.67 E-value=1.1e-14 Score=136.01 Aligned_cols=161 Identities=19% Similarity=0.294 Sum_probs=106.9
Q ss_pred ceEEEEeecCCCCCcCccccCCCC---Cc---ccCCCHHHHHHHHHHhhhhCCcceEEEEeCCCcccCHHHHHHHHHHhh
Q 017203 116 RSTLCISSQVGCKMGCNFCATGTM---GF---KSNLSSGEIVEQLVHASRLSNIRNVVFMGMGEPLNNYAALVEAVRIMT 189 (375)
Q Consensus 116 r~tl~vssq~GCnl~C~fC~~~~~---~~---~r~lt~~ei~~qi~~~~~~~~i~~Ivf~GmGEPlln~~~l~~~i~~l~ 189 (375)
+-++||-+ .|||++|.||++... +. .+.++.+++++.+..... ..+..|+|+| ||||++ +++.++++.++
T Consensus 22 ~~~~FvR~-~gCNlrC~~Cdt~~~~~~~~~~~~~~~s~~ei~~~i~~~~~-~~~~~V~lTG-GEPll~-~~l~~li~~l~ 97 (238)
T TIGR03365 22 QKTMFVRT-GGCDYRCSWCDSLFTWDGSAKDTWRPMTAEEVWQELKALGG-GTPLHVSLSG-GNPALQ-KPLGELIDLGK 97 (238)
T ss_pred CeEEEEEe-CCcCCcCcCCCCccccCcccCCccccCCHHHHHHHHHHHhC-CCCCeEEEeC-Cchhhh-HhHHHHHHHHH
Confidence 45777755 699999999998542 11 124899999999887643 2478999999 999998 47999999999
Q ss_pred CCCCCCCCCeEEEEeCCchhhHHHHhhhCCCceEEEEecCCCHHHHhhhcCCCCCCCHHHHHHHHHHHHHhcCCcEEEEE
Q 017203 190 GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEY 269 (375)
Q Consensus 190 ~~g~~i~~~~itisTnG~~~~i~~l~~~~~~v~laiSL~a~~~~~r~~i~p~~~~~~~~~vl~~l~~~~~~~g~~v~i~~ 269 (375)
+.| .++.|.|||+.+. ++.+.. ..++||+++++.. ++ ..++...++++.+ .+ +.++.+.+
T Consensus 98 ~~g-----~~v~leTNGtl~~--~~l~~~--d~v~vs~K~~~sg-----~~----~~~~~~~~~ik~l-~~-~~~~~vK~ 157 (238)
T TIGR03365 98 AKG-----YRFALETQGSVWQ--DWFRDL--DDLTLSPKPPSSG-----ME----TDWQALDDCIERL-DD-GPQTSLKV 157 (238)
T ss_pred HCC-----CCEEEECCCCCcH--HHHhhC--CEEEEeCCCCCCC-----CC----CcHHHHHHHHHHh-hh-cCceEEEE
Confidence 877 5699999998753 222221 2578999987651 11 2366667777543 33 57888988
Q ss_pred EeeCCCCCCHHHHHHHHHHHhcCCCEEEEeecCCC
Q 017203 270 IMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPI 304 (375)
Q Consensus 270 vli~gvND~~e~~~~L~~~l~~~~~~vnLip~np~ 304 (375)
++... +| .+.+.++...... ..+-+.|..+.
T Consensus 158 Vv~~~-~d-~~~a~~~~~~~~~--~~~~l~P~~~~ 188 (238)
T TIGR03365 158 VVFDD-AD-YAYAKEVHARYPD--LPFYLQPGNHT 188 (238)
T ss_pred EECCc-cc-HHHHHHHHHhcCC--CCEEECCCCCC
Confidence 87732 22 3334444332221 23445555544
No 50
>PRK13745 anaerobic sulfatase-maturase; Provisional
Probab=99.66 E-value=7e-15 Score=148.00 Aligned_cols=177 Identities=12% Similarity=0.135 Sum_probs=119.6
Q ss_pred ceEEEEeec-CCCCCcCccccCCCC------CcccCCCHHHHHHHHHHhhhhCC--cceEEEEeCCCcccCHH-HHHHHH
Q 017203 116 RSTLCISSQ-VGCKMGCNFCATGTM------GFKSNLSSGEIVEQLVHASRLSN--IRNVVFMGMGEPLNNYA-ALVEAV 185 (375)
Q Consensus 116 r~tl~vssq-~GCnl~C~fC~~~~~------~~~r~lt~~ei~~qi~~~~~~~~--i~~Ivf~GmGEPlln~~-~l~~~i 185 (375)
.+++.+..+ ..||++|.||+.... .....++.+++..-+.+.....+ ...|+|.| |||||+++ .+.+++
T Consensus 12 p~~~~~kp~~~~CNl~C~yC~~~~~~~~~~~~~~~~ms~e~~~~~i~~~~~~~~~~~v~i~f~G-GEPlL~~~~~~~~~~ 90 (412)
T PRK13745 12 PLYIMLKPVGAVCNLACDYCYYLEKSKLYQENPKHVMSDELLEKFIKEYINSQTMPQVLFTWHG-GETLMRPLSFYKKAL 90 (412)
T ss_pred ceEEEEeecCCCcCCCCcccCCcCCCcccccCccCCCCHHHHHHHHHHHHHcCCCCeEEEEEEc-cccCCCcHHHHHHHH
Confidence 467777654 589999999997422 11234777665554444432222 23577899 99999965 344555
Q ss_pred HHhhC--CCCCCCCCeEEEEeCCchh--hH-HHHhhhCCCceEEEEecCCCHHHHhhhcCC-CCCCCHHHHHHHHHHHHH
Q 017203 186 RIMTG--LPFQVSPKRITVSTVGIVH--AI-NKFHSDLPGLNLAVSLHAPVQDVRCQIMPA-ARAFPLEKLMNALKEYQK 259 (375)
Q Consensus 186 ~~l~~--~g~~i~~~~itisTnG~~~--~i-~~l~~~~~~v~laiSL~a~~~~~r~~i~p~-~~~~~~~~vl~~l~~~~~ 259 (375)
+.+++ .+.+ ..++|.|||++. .+ +.|.+ . .+.|.||||++. +.++..-+. +.+.++++++++++ .++
T Consensus 91 ~~~~~~~~~~~---i~~~i~TNG~ll~~e~~~~l~~-~-~~~v~ISlDG~~-~~hD~~R~~~~g~gsf~~v~~~i~-~l~ 163 (412)
T PRK13745 91 ELQKKYARGRQ---IDNCIQTNGTLLTDEWCEFFRE-N-NFLVGVSIDGPQ-EFHDEYRKNKMGKPSFVKVMKGIN-LLK 163 (412)
T ss_pred HHHHHHcCCCc---eEEEEeecCEeCCHHHHHHHHH-c-CeEEEEEecCCH-HHhhhhcCCCCCCccHHHHHHHHH-HHH
Confidence 54432 1211 468899999763 33 34444 3 368999999984 566655332 23468999999995 556
Q ss_pred hcCCcEEEEEEeeCCCCCCHHHHHHHHHHHhcCCCE-EEEeecCC
Q 017203 260 NSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVV-VNLIPFNP 303 (375)
Q Consensus 260 ~~g~~v~i~~vli~gvND~~e~~~~L~~~l~~~~~~-vnLip~np 303 (375)
+.|..+.+.+++.+. +.+++.++.+++.+++++ +.++|+.|
T Consensus 164 ~~gi~~~i~~vv~~~---n~~~~~e~~~~~~~lg~~~~~~~p~~~ 205 (412)
T PRK13745 164 KHGVEWNAMAVVNDF---NADYPLDFYHFFKELDCHYIQFAPIVE 205 (412)
T ss_pred HcCCCEEEEEEEcCC---ccccHHHHHHHHHHcCCCeEEEEeccC
Confidence 788888888888765 556789999999999985 88888776
No 51
>COG0535 Predicted Fe-S oxidoreductases [General function prediction only]
Probab=99.63 E-value=4.8e-14 Score=137.60 Aligned_cols=178 Identities=21% Similarity=0.307 Sum_probs=134.8
Q ss_pred CceEEEEeecCCCCCcCccccCCCCCc-ccCCCHHHHHHHHHHhhhhCCcceEEEEeCCCcccCHHHHHHHHHHhhCC-C
Q 017203 115 PRSTLCISSQVGCKMGCNFCATGTMGF-KSNLSSGEIVEQLVHASRLSNIRNVVFMGMGEPLNNYAALVEAVRIMTGL-P 192 (375)
Q Consensus 115 ~r~tl~vssq~GCnl~C~fC~~~~~~~-~r~lt~~ei~~qi~~~~~~~~i~~Ivf~GmGEPlln~~~l~~~i~~l~~~-g 192 (375)
.+..+.+..+..||++|.||+.+.... ...++.++....+........+..+.|+| |||+++ +.+.++++.+++. +
T Consensus 17 ~p~~~~~~~t~~Cnl~C~~C~~~~~~~~~~el~~~~~~~~~~~~~~~g~~~~v~~~g-GEPll~-~d~~ei~~~~~~~~~ 94 (347)
T COG0535 17 PPLVVGIELTNRCNLACKHCYAEAGKKLPGELSTEEDLRVIDELAELGEIPVVIFTG-GEPLLR-PDLLEIVEYARKKGG 94 (347)
T ss_pred CCcEEEEeeccccCCcCcccccccCCCCccccCHHHHHHHHHHHHHcCCeeEEEEeC-CCcccc-ccHHHHHHHHhhcCC
Confidence 457778778899999999998876543 57788888885555555432267889999 999999 6799999999866 5
Q ss_pred CCCCCCeEEEEeCCchh---hHHHHhhhCCCceEEEEecCCCHHHHhhhcCCCCCCCHHHHHHHHHHHHHhcCCcEEEEE
Q 017203 193 FQVSPKRITVSTVGIVH---AINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEY 269 (375)
Q Consensus 193 ~~i~~~~itisTnG~~~---~i~~l~~~~~~v~laiSL~a~~~~~r~~i~p~~~~~~~~~vl~~l~~~~~~~g~~v~i~~ 269 (375)
.+++++|||+.. .++++.+.+ ...+.||+++.+++.++.+.+. +..++.++++++. +.+.|..+.+.+
T Consensus 95 -----~~~~~~TnG~~~~~~~~~~l~~~g-~~~v~iSid~~~~e~hd~~rg~--~g~~~~~~~~i~~-~~~~g~~~~~~~ 165 (347)
T COG0535 95 -----IRVSLSTNGTLLTEEVLEKLKEAG-LDYVSISLDGLDPETHDPIRGV--KGVFKRAVEAIKN-LKEAGILVVINT 165 (347)
T ss_pred -----eEEEEeCCCccCCHHHHHHHHhcC-CcEEEEEecCCChhhhhhhcCC--CcHHHHHHHHHHH-HHHcCCeeeEEE
Confidence 689999999432 345556554 3579999999999988877542 4578999999954 457777766666
Q ss_pred EeeCCCCCCHHHHHHHHHHHhcCCC-EEEEeecCCCCC
Q 017203 270 IMLDGVNDEEQHAHQLGKLLETFQV-VVNLIPFNPIGS 306 (375)
Q Consensus 270 vli~gvND~~e~~~~L~~~l~~~~~-~vnLip~np~~~ 306 (375)
++.+. +.+++.++++++..+++ .+++.++.|.+.
T Consensus 166 ~v~~~---n~~~l~~~~~~~~~~g~~~~~~~~~~~~g~ 200 (347)
T COG0535 166 TVTKI---NYDELPEIADLAAELGVDELNVFPLIPVGR 200 (347)
T ss_pred EEecC---cHHHHHHHHHHHHHcCCCEEEEEEEeeccc
Confidence 66543 45789999999999985 477777777653
No 52
>TIGR03820 lys_2_3_AblA lysine-2,3-aminomutase. This model describes lysine-2,3-aminomutase as found along with beta-lysine acetyltransferase in a two-enzyme pathway for making the compatible solute N-epsilon-acetyl-beta-lysine. This compatible solute, or osmolyte, is known to protect a number of methanogenic archaea against salt stress. The trusted cutoff distinguishes a tight clade with essentially full-length homology from additional homologs that are shorter or highly diverged in the C-terminal region. All members of this family have the radical SAM motif CXXXCXXC, while some but not all have a second copy of the motif in the C-terminal region.
Probab=99.62 E-value=7.3e-14 Score=138.95 Aligned_cols=187 Identities=20% Similarity=0.237 Sum_probs=126.4
Q ss_pred ceEEEEeecCCCCCcCccccCCCC--CcccCCCHHHHHHHHHHhhhhCCcceEEEEeCCCcccCHHH-HHHHHHHhhCC-
Q 017203 116 RSTLCISSQVGCKMGCNFCATGTM--GFKSNLSSGEIVEQLVHASRLSNIRNVVFMGMGEPLNNYAA-LVEAVRIMTGL- 191 (375)
Q Consensus 116 r~tl~vssq~GCnl~C~fC~~~~~--~~~r~lt~~ei~~qi~~~~~~~~i~~Ivf~GmGEPlln~~~-l~~~i~~l~~~- 191 (375)
|.-+.+ +.+||++|+||+.... .....++.+++.+.+..+.....+..|.|+| ||||+..+. +..+++.+++.
T Consensus 109 rvLl~v--T~~C~~~CryC~R~~~~g~~~~~ls~eei~~~i~yI~~~p~I~~VlLSG-GDPLll~d~~L~~iL~~L~~Ip 185 (417)
T TIGR03820 109 RVLFLV--SNTCAMYCRHCTRKRKVGDRDSIPSKEQILEGIEYIRNTPQIRDVLLSG-GDPLLLSDDYLDWILTELRAIP 185 (417)
T ss_pred EEEEEE--cCCcCCCCcCCCCcccCCcccccCCHHHHHHHHHHHHhcCCCCEEEEeC-CccccCChHHHHHHHHHHhhcC
Confidence 444444 5999999999998642 1224577888777776666555789999999 999997664 44556887764
Q ss_pred CCCCCCCeEEEEeC-----Cc--hhhH-HHHhhhCCCceEEEEecCCCHHHHhhhcCCCCCCCHHHHHHHHHHHHHhcCC
Q 017203 192 PFQVSPKRITVSTV-----GI--VHAI-NKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQ 263 (375)
Q Consensus 192 g~~i~~~~itisTn-----G~--~~~i-~~l~~~~~~v~laiSL~a~~~~~r~~i~p~~~~~~~~~vl~~l~~~~~~~g~ 263 (375)
++ ..|.+.|+ +. .+.+ ..|.+. ..+.+.++++++. + + .+++++++ +.++++|+
T Consensus 186 hV----~~IRI~TR~pvv~P~RIT~ell~~Lk~~-~~~~v~~h~nhp~-E----i--------t~~a~~Al-~~L~~aGI 246 (417)
T TIGR03820 186 HV----EVIRIGTRVPVVLPQRITDELVAILKKH-HPVWLNTHFNHPR-E----I--------TASSKKAL-AKLADAGI 246 (417)
T ss_pred CC----ceEEEeeccccccccccCHHHHHHHHhc-CCeEEEEeCCChH-h----C--------hHHHHHHH-HHHHHcCC
Confidence 32 34778888 32 2222 333333 2355667777653 2 2 37888899 45678999
Q ss_pred cEEEEEEeeCCCCCCHHHHHHHHHHHhcCCCE-EEEeecCCCCCCCCCCCCcHHHHHHHHHHH
Q 017203 264 KIFIEYIMLDGVNDEEQHAHQLGKLLETFQVV-VNLIPFNPIGSVSQFRTSSDDKVSSFQKIL 325 (375)
Q Consensus 264 ~v~i~~vli~gvND~~e~~~~L~~~l~~~~~~-vnLip~np~~~~~~~~~~s~e~i~~f~~~l 325 (375)
.+..+.++++||||+.+-+.+|.+-+-..++. ..|....+......|+.|-.+. .++.+.|
T Consensus 247 ~l~nQsVLLkGVND~~~~l~~L~~~L~~~gV~PYYl~~~d~v~G~~hFrv~~~~g-~~I~~~l 308 (417)
T TIGR03820 247 PLGNQSVLLAGVNDCPRIMKKLVHKLVANRVRPYYLYQCDLSEGLSHFRTPVGKG-IEIIESL 308 (417)
T ss_pred EEEeeceEECCcCCCHHHHHHHHHHHHHCCCeeceeeeccCCCCcccccCcHHHH-HHHHHHH
Confidence 99999999999999999999999888888764 4444555653334566664433 3333333
No 53
>COG5014 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=99.61 E-value=1.4e-14 Score=125.16 Aligned_cols=161 Identities=18% Similarity=0.280 Sum_probs=120.3
Q ss_pred ceEEEEeecCCCCCcCccccCCCCC-----cccCCCHHHHHHHHHHhhhhCCcceEEEEeCCCcccCHHHHHHHHHHhhC
Q 017203 116 RSTLCISSQVGCKMGCNFCATGTMG-----FKSNLSSGEIVEQLVHASRLSNIRNVVFMGMGEPLNNYAALVEAVRIMTG 190 (375)
Q Consensus 116 r~tl~vssq~GCnl~C~fC~~~~~~-----~~r~lt~~ei~~qi~~~~~~~~i~~Ivf~GmGEPlln~~~l~~~i~~l~~ 190 (375)
-.|.-. +|||+.|.||+++... .+..+++.|+++.+..+.+..+.+-|-++| |||++-.+.++++|+.+.+
T Consensus 43 iaTAD~---VGCnl~CayCw~y~r~~~~~rag~f~~P~eVaeRL~ei~K~~g~d~vRiSG-~EP~l~~EHvlevIeLl~~ 118 (228)
T COG5014 43 IATADT---VGCNLLCAYCWNYFRNLRPKRAGDFLSPEEVAERLLEISKKRGCDLVRISG-AEPILGREHVLEVIELLVN 118 (228)
T ss_pred eeeccc---cccceeeHHhhhhhhcCCccccccccCHHHHHHHHHHHHHhcCCcEEEeeC-CCccccHHHHHHHHHhccC
Confidence 355555 9999999999996432 134689999999999887767789999999 9999999999999999854
Q ss_pred CCCCCCCCeEEEEeCCchh----hH-HHHhhhCCCceEEEEecCCCHHHHhhhcCCCCCCCHHHHHHHHHHHHHhcCCcE
Q 017203 191 LPFQVSPKRITVSTVGIVH----AI-NKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKI 265 (375)
Q Consensus 191 ~g~~i~~~~itisTnG~~~----~i-~~l~~~~~~v~laiSL~a~~~~~r~~i~p~~~~~~~~~vl~~l~~~~~~~g~~v 265 (375)
....+.|||+.. .+ +.|.. .+.+-+.+|+++++++...+|+..+..+ |.--+++++ ++...|.++
T Consensus 119 -------~tFvlETNG~~~g~drslv~el~n-r~nv~vRVsvKG~dpesF~kIT~asp~~-F~~QL~aLr-~L~~~g~rf 188 (228)
T COG5014 119 -------NTFVLETNGLMFGFDRSLVDELVN-RLNVLVRVSVKGWDPESFEKITGASPEY-FRYQLKALR-HLHGKGHRF 188 (228)
T ss_pred -------ceEEEEeCCeEEecCHHHHHHHhc-CCceEEEEEecCCCHHHHHHHhcCChHH-HHHHHHHHH-HHHhcCcee
Confidence 458899999753 22 33333 2457788999999999999998776665 888999994 566777766
Q ss_pred EEEEEeeCCCCCCHHHHHHHHHHHhcCC
Q 017203 266 FIEYIMLDGVNDEEQHAHQLGKLLETFQ 293 (375)
Q Consensus 266 ~i~~vli~gvND~~e~~~~L~~~l~~~~ 293 (375)
+...+. ++- .++-.++|++-+.+.+
T Consensus 189 ~pA~~~--~f~-~Ed~~k~Lak~Lgehp 213 (228)
T COG5014 189 WPAVVY--DFF-REDGLKELAKRLGEHP 213 (228)
T ss_pred eehhhh--ccc-hhhhHHHHHHHhccCC
Confidence 554433 221 2333455888877654
No 54
>COG0641 AslB Arylsulfatase regulator (Fe-S oxidoreductase) [General function prediction only]
Probab=99.60 E-value=6.8e-14 Score=138.40 Aligned_cols=169 Identities=15% Similarity=0.242 Sum_probs=113.0
Q ss_pred CCCcCccccCCCCCccc-CCCHH---HHHHHHHHhhhhCCcceEEEEeCCCcccCHHHHHHHHHHhhCC-CCCCCCCeEE
Q 017203 127 CKMGCNFCATGTMGFKS-NLSSG---EIVEQLVHASRLSNIRNVVFMGMGEPLNNYAALVEAVRIMTGL-PFQVSPKRIT 201 (375)
Q Consensus 127 Cnl~C~fC~~~~~~~~r-~lt~~---ei~~qi~~~~~~~~i~~Ivf~GmGEPlln~~~l~~~i~~l~~~-g~~i~~~~it 201 (375)
||++|.||+........ .++.+ ++++++.......+ -.|+|.| |||||....+.+.+..+.++ .-+ -..+-+
T Consensus 18 CNL~C~YC~~~~~~~~~~~Ms~etle~~i~~~~~~~~~~~-v~~~w~G-GEPlL~~~~f~~~~~~l~~k~~~~-~~i~~s 94 (378)
T COG0641 18 CNLDCKYCFYLEKESLQRIMSDETLEEYVRQYIAASNGDK-VTFTWQG-GEPLLAGLDFYRKAVALQQKYANG-KTISNA 94 (378)
T ss_pred cCCCCCeeCcccCCCCCCCCCHHHHHHHHHHHHhhCCCCe-eEEEEEC-CccccchHHHHHHHHHHHHHHhcC-CeeEEE
Confidence 99999999986544322 24433 34444443332112 3599999 99999966555555554333 111 124566
Q ss_pred EEeCCchh--hHHHHhhhCCCceEEEEecCCCHHHHhhhcC-CCCCCCHHHHHHHHHHHHHhcCCcEEEEEEeeCCCCCC
Q 017203 202 VSTVGIVH--AINKFHSDLPGLNLAVSLHAPVQDVRCQIMP-AARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDE 278 (375)
Q Consensus 202 isTnG~~~--~i~~l~~~~~~v~laiSL~a~~~~~r~~i~p-~~~~~~~~~vl~~l~~~~~~~g~~v~i~~vli~gvND~ 278 (375)
+.|||++. .+.++.+.. .+.+.||||++ .+.+++.-+ .+.+.+++.+++++ .++++.+..+.+.+++.+ ++
T Consensus 95 iqTNg~LL~~e~~e~l~~~-~~~IgISiDGp-~eihD~~R~~~~GkgTfd~i~~~i-~~L~~~~v~~~~~~vv~~---~n 168 (378)
T COG0641 95 LQTNGTLLNDEWAEFLAEH-DFLIGISIDGP-EEIHDKYRVTKSGKGTFDRVMKGL-ELLQAHGVDFNTLTVVNR---QN 168 (378)
T ss_pred EEEcccccCHHHHHHHHhc-CceEEEeccCc-hHhccccccCCCCCccHHHHHHHH-HHHHHcCCcEEEEEEEch---hH
Confidence 99999863 454555554 36889999999 466666543 35678899999999 566778888888777654 36
Q ss_pred HHHHHHHHHHHhcCCC-EEEEeecCCC
Q 017203 279 EQHAHQLGKLLETFQV-VVNLIPFNPI 304 (375)
Q Consensus 279 ~e~~~~L~~~l~~~~~-~vnLip~np~ 304 (375)
.++..++.+++...+. .+.++|..+.
T Consensus 169 ~~~~~ei~~~l~~~g~~~i~fip~~~~ 195 (378)
T COG0641 169 VLHPEEIYHFLKSEGSKFIQFIPLVES 195 (378)
T ss_pred hhCHHHHHHHHHHcccceEEEEecccC
Confidence 7789999999988873 3666776554
No 55
>PRK07094 biotin synthase; Provisional
Probab=99.57 E-value=8.3e-13 Score=128.76 Aligned_cols=188 Identities=16% Similarity=0.235 Sum_probs=138.9
Q ss_pred cCCCCCcCccccCCCCC--ccc-CCCHHHHHHHHHHhhhhCCcceEEEEeCCC-cccCHHHHHHHHHHhhCC-CCCCCCC
Q 017203 124 QVGCKMGCNFCATGTMG--FKS-NLSSGEIVEQLVHASRLSNIRNVVFMGMGE-PLNNYAALVEAVRIMTGL-PFQVSPK 198 (375)
Q Consensus 124 q~GCnl~C~fC~~~~~~--~~r-~lt~~ei~~qi~~~~~~~~i~~Ivf~GmGE-Plln~~~l~~~i~~l~~~-g~~i~~~ 198 (375)
+.||+++|.||..+... ..+ .++++++++.+..... .++..|.|+| |+ |.++.+.+.++++.+++. + .
T Consensus 46 s~gC~~~C~fC~~~~~~~~~~r~~ls~eei~~~~~~~~~-~g~~~i~l~g-G~~~~~~~~~l~~l~~~i~~~~~-----l 118 (323)
T PRK07094 46 SNYCRNNCLYCGLRRDNKNIERYRLSPEEILECAKKAYE-LGYRTIVLQS-GEDPYYTDEKIADIIKEIKKELD-----V 118 (323)
T ss_pred CCCCCCCCEeCCcccCCCCCcCcCCCHHHHHHHHHHHHH-CCCCEEEEec-CCCCCCCHHHHHHHHHHHHccCC-----c
Confidence 49999999999875431 122 3699999999887665 4788999999 96 667778999999999985 4 3
Q ss_pred eEEEEeCCchh-hHHHHhhhCCCceEEEEecCCCHHHHhhhcCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEEeeCCC-C
Q 017203 199 RITVSTVGIVH-AINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGV-N 276 (375)
Q Consensus 199 ~itisTnG~~~-~i~~l~~~~~~v~laiSL~a~~~~~r~~i~p~~~~~~~~~vl~~l~~~~~~~g~~v~i~~vli~gv-N 276 (375)
.+++++....+ .++.|.+.+ ...+.+++++.+++.++.+.| +.++++.+++++ .+++.|..+...+++ |+ .
T Consensus 119 ~i~~~~g~~~~e~l~~Lk~aG-~~~v~~glEs~~~~~~~~i~~---~~s~~~~~~~i~-~l~~~Gi~v~~~~ii--Glpg 191 (323)
T PRK07094 119 AITLSLGERSYEEYKAWKEAG-ADRYLLRHETADKELYAKLHP---GMSFENRIACLK-DLKELGYEVGSGFMV--GLPG 191 (323)
T ss_pred eEEEecCCCCHHHHHHHHHcC-CCEEEeccccCCHHHHHHhCC---CCCHHHHHHHHH-HHHHcCCeecceEEE--ECCC
Confidence 46665433323 466777765 346789999999999999865 468899999994 567788775544332 33 5
Q ss_pred CCHHHHHHHHHHHhcCCCE-EEEeecCCCCCCCCC---CCCcHHHHHHHHHHHH
Q 017203 277 DEEQHAHQLGKLLETFQVV-VNLIPFNPIGSVSQF---RTSSDDKVSSFQKILR 326 (375)
Q Consensus 277 D~~e~~~~L~~~l~~~~~~-vnLip~np~~~~~~~---~~~s~e~i~~f~~~l~ 326 (375)
++.+++.+.+++++.+++. +.+.+|.|. +++++ .+++.++..++...++
T Consensus 192 et~ed~~~~l~~l~~l~~~~v~~~~~~P~-pgTpl~~~~~~~~~~~~~~~a~~R 244 (323)
T PRK07094 192 QTLEDLADDILFLKELDLDMIGIGPFIPH-PDTPLKDEKGGSLELTLKVLALLR 244 (323)
T ss_pred CCHHHHHHHHHHHHhCCCCeeeeeccccC-CCCCcccCCCCCHHHHHHHHHHHH
Confidence 7889999999999999864 778888887 45543 4566777666666655
No 56
>TIGR02491 NrdG anaerobic ribonucleoside-triphosphate reductase activating protein. This enzyme is a member of the radical-SAM family (pfam04055) and utilizes S-adenosyl methionine, an iron-sulfur cluster and a reductant (dihydroflavodoxin ) to produce a glycine-centered radical in the class III (anaerobic) ribonucleotide triphosphate reductase (NrdD, TIGR02487). The two components form an alpha-2/beta-2 heterodimer.
Probab=99.54 E-value=2.8e-14 Score=124.66 Aligned_cols=115 Identities=23% Similarity=0.310 Sum_probs=79.2
Q ss_pred CCCCCCCCCCCCCceEEEEeecCCCCCcCccccCCCCC---cccCCC---HHHHHHHHHHhhhhCCcceEEEEeCCCccc
Q 017203 103 LGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMG---FKSNLS---SGEIVEQLVHASRLSNIRNVVFMGMGEPLN 176 (375)
Q Consensus 103 ~~~~~g~~~~~~~r~tl~vssq~GCnl~C~fC~~~~~~---~~r~lt---~~ei~~qi~~~~~~~~i~~Ivf~GmGEPll 176 (375)
++.+|| +|.|.++++ .|||++|+||+++... ....++ .+++++.+... ..+.+|+|+| ||||+
T Consensus 8 ~s~~dG----~G~r~~if~---~gCnl~C~~C~n~~~~~~~~g~~~~~~~~~~i~~~l~~~---~~~~gVt~sG-GEPll 76 (154)
T TIGR02491 8 DDIVNG----EGIRVSLFV---AGCKHHCEGCFNKETWNFNGGKEFTEALEKEIIRDLNDN---PLIDGLTLSG-GDPLY 76 (154)
T ss_pred CceecC----CCcEEEEEE---CCCCCCCcCCCcccccCCCCCCcCCHHHHHHHHHHHHhc---CCcCeEEEeC-hhhCC
Confidence 345666 468999998 8999999999997542 245688 55555555432 2357899999 99999
Q ss_pred CH--HHHHHHHHHhhCC-CCCCCCCeEEEEeCCchh-hHHH---HhhhCCCceEEEEecCCCHH
Q 017203 177 NY--AALVEAVRIMTGL-PFQVSPKRITVSTVGIVH-AINK---FHSDLPGLNLAVSLHAPVQD 233 (375)
Q Consensus 177 n~--~~l~~~i~~l~~~-g~~i~~~~itisTnG~~~-~i~~---l~~~~~~v~laiSL~a~~~~ 233 (375)
++ +.+.++++.+++. + .+..+.|||+.. .+.+ ..+....+++.++.+..+++
T Consensus 77 q~~~~~l~~ll~~~k~~~~-----~~~~~~~tG~~~~~~~~~~~~~~~l~~~D~liDgk~~~~~ 135 (154)
T TIGR02491 77 PRNVEELIELVKKIKAEFP-----EKDIWLWTGYTWEEILEDEKHLEVLKYIDVLVDGKFELSK 135 (154)
T ss_pred CCCHHHHHHHHHHHHHhCC-----CCCEEEeeCccHHHHhcchhHHHHHhhCCEEEechhhhhc
Confidence 65 8999999999976 4 456778999864 2211 01223346776776665543
No 57
>PRK09240 thiH thiamine biosynthesis protein ThiH; Reviewed
Probab=99.51 E-value=2.4e-12 Score=127.83 Aligned_cols=192 Identities=12% Similarity=0.106 Sum_probs=143.4
Q ss_pred cCCCCCcCccccCCCC--CcccCCCHHHHHHHHHHhhhhCCcceEEEEeCCCccc--CHHHHHHHHHHhhCCCCCCCCCe
Q 017203 124 QVGCKMGCNFCATGTM--GFKSNLSSGEIVEQLVHASRLSNIRNVVFMGMGEPLN--NYAALVEAVRIMTGLPFQVSPKR 199 (375)
Q Consensus 124 q~GCnl~C~fC~~~~~--~~~r~lt~~ei~~qi~~~~~~~~i~~Ivf~GmGEPll--n~~~l~~~i~~l~~~g~~i~~~~ 199 (375)
+.+|+.+|.||.-... .....++.+||++.+..+.. .+++.|.|+| |||.. ..+.+.++++.+++.. ..
T Consensus 81 Tn~C~~~C~YC~f~~~~~~~~~~ls~eEI~~~a~~~~~-~Gv~~i~lvg-Ge~p~~~~~e~l~~~i~~Ik~~~-----p~ 153 (371)
T PRK09240 81 SNYCANDCTYCGFSMSNKIKRKTLDEEEIEREMAAIKK-LGFEHILLLT-GEHEAKVGVDYIRRALPIAREYF-----SS 153 (371)
T ss_pred cccccCcCCcCCCCCCCCCccccCCHHHHHHHHHHHHh-CCCCEEEEee-CCCCCCCCHHHHHHHHHHHHHhC-----CC
Confidence 4899999999976432 12257899999999988765 4789999999 99775 3678999999998652 24
Q ss_pred EEEEeCCch-hhHHHHhhhCCCceEEEEecCCCHHHHhhhcCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEEeeCCCCCC
Q 017203 200 ITVSTVGIV-HAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDE 278 (375)
Q Consensus 200 itisTnG~~-~~i~~l~~~~~~v~laiSL~a~~~~~r~~i~p~~~~~~~~~vl~~l~~~~~~~g~~v~i~~vli~gvND~ 278 (375)
++++++.+. ..+++|.+.+. ..+.+++++.+++.+..+.|..++.++++.+++++ .+.+.|.+ .+...+|-|++++
T Consensus 154 i~i~~g~lt~e~l~~Lk~aGv-~r~~i~lET~~~~~~~~i~~~g~~h~~~~rl~~i~-~a~~aG~~-~v~~g~i~Glge~ 230 (371)
T PRK09240 154 VSIEVQPLSEEEYAELVELGL-DGVTVYQETYNPATYAKHHLRGPKRDFEYRLETPE-RAGRAGIR-KIGLGALLGLSDW 230 (371)
T ss_pred ceeccCCCCHHHHHHHHHcCC-CEEEEEEecCCHHHHHHhCcCCCCCCHHHHHHHHH-HHHHcCCC-eeceEEEecCCcc
Confidence 666666554 35677777763 57999999999999999987666778999999995 55677765 5667788899999
Q ss_pred HHHHHHHHHHHhcCCC-------EEEEeecCCCCCC--CCCCCCcHHHHHHHHHHHH
Q 017203 279 EQHAHQLGKLLETFQV-------VVNLIPFNPIGSV--SQFRTSSDDKVSSFQKILR 326 (375)
Q Consensus 279 ~e~~~~L~~~l~~~~~-------~vnLip~np~~~~--~~~~~~s~e~i~~f~~~l~ 326 (375)
.+|.-.++..++.+.. .|.++.++|. ++ .+..+.+.+++.+....++
T Consensus 231 ~~d~~~~a~~l~~L~~~~~~~~~sv~~~~l~P~-~g~~~~~~~~~~~e~l~~ia~~R 286 (371)
T PRK09240 231 RTDALMTALHLRYLQRKYWQAEYSISFPRLRPC-TGGIEPASIVSDKQLVQLICAFR 286 (371)
T ss_pred HHHHHHHHHHHHHHHHhCCCCceeeecCccccC-CCCCCCCCCCCHHHHHHHHHHHH
Confidence 9999999887776643 3666667787 34 2234456767766666554
No 58
>PF13353 Fer4_12: 4Fe-4S single cluster domain; PDB: 3C8F_A 3CB8_A 3T7V_A 2YX0_A 3CAN_A.
Probab=99.47 E-value=1.3e-13 Score=117.50 Aligned_cols=87 Identities=31% Similarity=0.560 Sum_probs=59.7
Q ss_pred CCceEEEEeecCCCCCcCccccCCCCCc---ccCCCHHHHHHHHHHhhhhCCcceEEEEeCCCccc--CHHHHHHHHHHh
Q 017203 114 GPRSTLCISSQVGCKMGCNFCATGTMGF---KSNLSSGEIVEQLVHASRLSNIRNVVFMGMGEPLN--NYAALVEAVRIM 188 (375)
Q Consensus 114 ~~r~tl~vssq~GCnl~C~fC~~~~~~~---~r~lt~~ei~~qi~~~~~~~~i~~Ivf~GmGEPll--n~~~l~~~i~~l 188 (375)
+.+.+++. .|||++|.||+++.... ...++ .+.++++.......++..|+|+| ||||+ +++.+.++++.+
T Consensus 5 g~~~~~~t---~~Cnl~C~yC~~~~~~~~~~~~~~~-~~~~~~ii~~~~~~~~~~i~l~G-GEPll~~~~~~l~~i~~~~ 79 (139)
T PF13353_consen 5 GIRVVLFT---NGCNLRCKYCFNSEIWKFKRGKELS-EEIIEEIIEELKNYGIKGIVLTG-GEPLLHENYDELLEILKYI 79 (139)
T ss_dssp SCEEEEEE---C--SB--TT-TTCCCS-TT-SEEC--HHHHHHHCHHHCCCCCCEEEEEC-STGGGHHSHHHHHHHHHHH
T ss_pred CEEEEEEc---CcccccCcCcCCcccCccccccccc-chhhhhhhhHHhcCCceEEEEcC-CCeeeeccHhHHHHHHHHH
Confidence 57888884 78999999999865432 22344 55666665544346789999999 99999 889999999999
Q ss_pred hCCCCCCCCCeEEEEeCCchh
Q 017203 189 TGLPFQVSPKRITVSTVGIVH 209 (375)
Q Consensus 189 ~~~g~~i~~~~itisTnG~~~ 209 (375)
++.+. ..+.+.|||+..
T Consensus 80 k~~~~----~~~~~~tng~~~ 96 (139)
T PF13353_consen 80 KEKFP----KKIIILTNGYTL 96 (139)
T ss_dssp HHTT-----SEEEEEETT--H
T ss_pred HHhCC----CCeEEEECCCch
Confidence 98851 468899999863
No 59
>TIGR00433 bioB biotin synthetase. Catalyzes the last step of the biotin biosynthesis pathway.
Probab=99.47 E-value=2.2e-11 Score=117.17 Aligned_cols=186 Identities=14% Similarity=0.202 Sum_probs=125.1
Q ss_pred cCCCCCcCccccCCCCC-----cccCCCHHHHHHHHHHhhhhCCcceEE--EEeCCCcccCH--HHHHHHHHHhhCCCCC
Q 017203 124 QVGCKMGCNFCATGTMG-----FKSNLSSGEIVEQLVHASRLSNIRNVV--FMGMGEPLNNY--AALVEAVRIMTGLPFQ 194 (375)
Q Consensus 124 q~GCnl~C~fC~~~~~~-----~~r~lt~~ei~~qi~~~~~~~~i~~Iv--f~GmGEPlln~--~~l~~~i~~l~~~g~~ 194 (375)
+.|||++|.||...... ..+.++++++++.+..... .++..+. .+| ++|.... +.+.++.+.+++.+
T Consensus 36 s~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~-~g~~~~~l~~~g-~~~~~~~~~~~~~~i~~~~~~~~-- 111 (296)
T TIGR00433 36 SGGCPEDCKYCSQSSRSKTGLPIERLKKVDEVLEEARKAKA-AGATRFCLVASG-RGPKDREFMEYVEAMVQIVEEMG-- 111 (296)
T ss_pred cCCCCCCCcCCCCcccCCCCCccccCCCHHHHHHHHHHHHH-CCCCEEEEEEec-CCCChHHHHHHHHHHHHHHHhCC--
Confidence 59999999999885432 3466889999999887654 3555553 345 6666431 13333444444334
Q ss_pred CCCCeEEEEeCCch-h-hHHHHhhhCCCceEEEEecCCCHHHHhhhcCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEEee
Q 017203 195 VSPKRITVSTVGIV-H-AINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIML 272 (375)
Q Consensus 195 i~~~~itisTnG~~-~-~i~~l~~~~~~v~laiSL~a~~~~~r~~i~p~~~~~~~~~vl~~l~~~~~~~g~~v~i~~vli 272 (375)
.++.++ +|.. + .++.|.+.+ ...+.++++ .+++.++++.+ +.++++.+++++ .+++.|.++...+ +
T Consensus 112 ---i~~~~~-~g~~~~e~l~~Lk~aG-~~~v~i~~E-~~~~~~~~i~~---~~s~~~~~~ai~-~l~~~Gi~v~~~~--i 179 (296)
T TIGR00433 112 ---LKTCAT-LGLLDPEQAKRLKDAG-LDYYNHNLD-TSQEFYSNIIS---THTYDDRVDTLE-NAKKAGLKVCSGG--I 179 (296)
T ss_pred ---CeEEec-CCCCCHHHHHHHHHcC-CCEEEEccc-CCHHHHhhccC---CCCHHHHHHHHH-HHHHcCCEEEEeE--E
Confidence 345444 4654 2 355666655 356889999 78899988753 468999999995 5567888766644 3
Q ss_pred CCCCCCHHHHHHHHHHHhcCCCE-EEEeecCCCCCCC---CCCCCcHHHHHHHHHHHH
Q 017203 273 DGVNDEEQHAHQLGKLLETFQVV-VNLIPFNPIGSVS---QFRTSSDDKVSSFQKILR 326 (375)
Q Consensus 273 ~gvND~~e~~~~L~~~l~~~~~~-vnLip~np~~~~~---~~~~~s~e~i~~f~~~l~ 326 (375)
-|.+++.+++.+++++++.+++. +.+.++.|. +++ .+.+++.++..++...++
T Consensus 180 ~Gl~et~~d~~~~~~~l~~l~~~~i~l~~l~p~-~gT~l~~~~~~s~~~~~~~ia~~r 236 (296)
T TIGR00433 180 FGLGETVEDRIGLALALANLPPESVPINFLVKI-KGTPLADNKELSADDALKTIALAR 236 (296)
T ss_pred EeCCCCHHHHHHHHHHHHhCCCCEEEeeeeEEc-CCCccCCCCCCCHHHHHHHHHHHH
Confidence 47788999999999999999865 666666666 333 456777766666655554
No 60
>TIGR01125 MiaB-like tRNA modifying enzyme YliG, TIGR01125. This clade spans alpha and gamma proteobacteria, cyano bacteria, deinococcus, porphyromonas, aquifex, helicobacter, campylobacter, thermotoga, chlamydia, streptococcus coelicolor and clostridium, but does not include most other gram positive bacteria, archaea or eukaryotes.
Probab=99.45 E-value=1.2e-11 Score=125.17 Aligned_cols=184 Identities=13% Similarity=0.241 Sum_probs=129.5
Q ss_pred eEEEEeecCCCCCcCccccCCCC-CcccCCCHHHHHHHHHHhhhhCCcceEEEEe-----CCCcccCHHHHHHHHHHhhC
Q 017203 117 STLCISSQVGCKMGCNFCATGTM-GFKSNLSSGEIVEQLVHASRLSNIRNVVFMG-----MGEPLNNYAALVEAVRIMTG 190 (375)
Q Consensus 117 ~tl~vssq~GCnl~C~fC~~~~~-~~~r~lt~~ei~~qi~~~~~~~~i~~Ivf~G-----mGEPlln~~~l~~~i~~l~~ 190 (375)
...+|.++.|||++|.||..+.. +..|..+++++++++..... .+...|+|.| .|+|+.+.+.+.++++.+.+
T Consensus 135 ~~~~i~~srGC~~~CsfC~~~~~~G~~r~r~~e~Vv~Ei~~l~~-~g~k~i~~~~~d~~~~g~d~~~~~~l~~Ll~~i~~ 213 (430)
T TIGR01125 135 HYAYLKVAEGCNRRCAFCIIPSIRGKLRSRPIEEILKEAERLVD-QGVKEIILIAQDTTAYGKDLYRESKLVDLLEELGK 213 (430)
T ss_pred eEEEEEEccCCCCCCCcCCeecccCCceecCHHHHHHHHHHHHH-CCCcEEEEEeECCCccccCCCCcccHHHHHHHHHh
Confidence 44567888999999999988643 34577889999999998765 3568898886 57877665678888888876
Q ss_pred CCCCCCCCeEEEE-e--CCchhhHHHHhhhCC--CceEEEEecCCCHHHHhhhcCCCCCCCHHHHHHHHHHHHHhcCCcE
Q 017203 191 LPFQVSPKRITVS-T--VGIVHAINKFHSDLP--GLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKI 265 (375)
Q Consensus 191 ~g~~i~~~~itis-T--nG~~~~i~~l~~~~~--~v~laiSL~a~~~~~r~~i~p~~~~~~~~~vl~~l~~~~~~~g~~v 265 (375)
.+ ++ ..+.++ + ..+.+.+.++....+ ...+.+++.+.+++..+.+ +++++.+++.++++. +++.+..+
T Consensus 214 ~~-~i--~~~r~~~~~p~~~~~ell~~~~~~~~~~~~l~iglES~s~~vLk~m---~k~~~~~~~~~~i~~-l~~~~~~i 286 (430)
T TIGR01125 214 VG-GI--YWIRMHYLYPDELTDDVIDLMAEGPKVLPYLDIPLQHASDRILKLM---RRPGSGEQQLDFIER-LREKCPDA 286 (430)
T ss_pred cC-Cc--cEEEEccCCcccCCHHHHHHHhhCCcccCceEeCCCCCCHHHHhhC---CCCCCHHHHHHHHHH-HHHhCCCC
Confidence 53 01 223332 2 223344433333332 2357889999999887765 567889999999954 45555455
Q ss_pred EEEEEeeCC-CCCCHHHHHHHHHHHhcCCC-EEEEeecCCCCCCCC
Q 017203 266 FIEYIMLDG-VNDEEQHAHQLGKLLETFQV-VVNLIPFNPIGSVSQ 309 (375)
Q Consensus 266 ~i~~vli~g-vND~~e~~~~L~~~l~~~~~-~vnLip~np~~~~~~ 309 (375)
.+...+|-| .++++++++++++|+++.+. .+++.+|.|. ++++
T Consensus 287 ~i~~~~I~G~PgET~e~~~~t~~fl~~~~~~~~~~~~~sp~-pGT~ 331 (430)
T TIGR01125 287 VLRTTFIVGFPGETEEDFQELLDFVEEGQFDRLGAFTYSPE-EGTD 331 (430)
T ss_pred eEeEEEEEECCCCCHHHHHHHHHHHHhcCCCEEeeeeccCC-CCCc
Confidence 555555545 47899999999999999886 4788888887 4443
No 61
>PRK08508 biotin synthase; Provisional
Probab=99.43 E-value=2.2e-11 Score=116.49 Aligned_cols=205 Identities=13% Similarity=0.137 Sum_probs=139.0
Q ss_pred ecCCCCCcCccccCCCCCc-----ccCCCHHHHHHHHHHhhhhCCcceEEEEeCCCcc--cCHHHHHHHHHHhhCCCCCC
Q 017203 123 SQVGCKMGCNFCATGTMGF-----KSNLSSGEIVEQLVHASRLSNIRNVVFMGMGEPL--NNYAALVEAVRIMTGLPFQV 195 (375)
Q Consensus 123 sq~GCnl~C~fC~~~~~~~-----~r~lt~~ei~~qi~~~~~~~~i~~Ivf~GmGEPl--ln~~~l~~~i~~l~~~g~~i 195 (375)
.+.||+.+|.||+.+.... .+.+++++|++.+..+.. .++..+++.+.|+-+ ...+.+.++++.+++.+.
T Consensus 13 ~s~gC~~~C~FCa~~~~~~~~~~~y~~~s~eeI~~~a~~a~~-~g~~~~~lv~sg~~~~~~~~e~~~ei~~~ik~~~p-- 89 (279)
T PRK08508 13 SSGNCKEDCKYCTQSAHYKADIKRYKRKDIEQIVQEAKMAKA-NGALGFCLVTSGRGLDDKKLEYVAEAAKAVKKEVP-- 89 (279)
T ss_pred ccCCCCCCCcCCCCcccCCCCCccccCCCHHHHHHHHHHHHH-CCCCEEEEEeccCCCCcccHHHHHHHHHHHHhhCC--
Confidence 3489999999999865321 134799999999988765 367888886424411 134678899999987642
Q ss_pred CCCeEEE-EeCCchh--hHHHHhhhCCCceEEEEecCCCHHHHhhhcCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEEee
Q 017203 196 SPKRITV-STVGIVH--AINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIML 272 (375)
Q Consensus 196 ~~~~iti-sTnG~~~--~i~~l~~~~~~v~laiSL~a~~~~~r~~i~p~~~~~~~~~vl~~l~~~~~~~g~~v~i~~vli 272 (375)
.+.+ .++|... .+++|.+.+. ..+.+.+++. ++.+..+. +..++++.++.++ .+++.|. .+...+|
T Consensus 90 ---~l~i~~s~G~~~~e~l~~Lk~aGl-d~~~~~lEt~-~~~~~~i~---~~~~~~~~l~~i~-~a~~~Gi--~v~sg~I 158 (279)
T PRK08508 90 ---GLHLIACNGTASVEQLKELKKAGI-FSYNHNLETS-KEFFPKIC---TTHTWEERFQTCE-NAKEAGL--GLCSGGI 158 (279)
T ss_pred ---CcEEEecCCCCCHHHHHHHHHcCC-CEEcccccch-HHHhcCCC---CCCCHHHHHHHHH-HHHHcCC--eecceeE
Confidence 2333 4688753 4677777653 4567777774 45555553 2467899999995 4567775 4455777
Q ss_pred CCCCCCHHHHHHHHHHHhcCCCE-EEEeecCCCCCCCCC--CCCcHHHHHHHHHHHHhcCCceEEeccCCCcch
Q 017203 273 DGVNDEEQHAHQLGKLLETFQVV-VNLIPFNPIGSVSQF--RTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDI 343 (375)
Q Consensus 273 ~gvND~~e~~~~L~~~l~~~~~~-vnLip~np~~~~~~~--~~~s~e~i~~f~~~l~~~~Gi~v~vR~~~g~di 343 (375)
.|.+++.+++.+++.++++++.. |-+.+|+|. ++.++ ++++.++..+...+++ -.=-.+.||-+.|++.
T Consensus 159 ~GlGEt~ed~~~~l~~lr~L~~~svpl~~~~p~-~~t~~~~~~~~~~~~lr~iAv~R-l~lp~~~i~~~~gr~~ 230 (279)
T PRK08508 159 FGLGESWEDRISFLKSLASLSPHSTPINFFIPN-PALPLKAPTLSADEALEIVRLAK-EALPNARLMVAGGREV 230 (279)
T ss_pred EecCCCHHHHHHHHHHHHcCCCCEEeeCCcCCC-CCCCCCCCCCCHHHHHHHHHHHH-HHCCCceeeecCChhh
Confidence 89999999999999999999865 444445565 33332 3456777777777766 2222467777777643
No 62
>PF13394 Fer4_14: 4Fe-4S single cluster domain; PDB: 1TV8_B 1TV7_A 2FB2_A 2FB3_A.
Probab=99.42 E-value=3.6e-13 Score=112.01 Aligned_cols=99 Identities=25% Similarity=0.426 Sum_probs=50.3
Q ss_pred CCCCCcCccccCCC---CCcccCCCHHHHHHHHHHhhhhC-CcceEEEEeCCCcc--cCHHHHHHHHHHhhCCCCCCCCC
Q 017203 125 VGCKMGCNFCATGT---MGFKSNLSSGEIVEQLVHASRLS-NIRNVVFMGMGEPL--NNYAALVEAVRIMTGLPFQVSPK 198 (375)
Q Consensus 125 ~GCnl~C~fC~~~~---~~~~r~lt~~ei~~qi~~~~~~~-~i~~Ivf~GmGEPl--ln~~~l~~~i~~l~~~g~~i~~~ 198 (375)
.+||++|.||++.. ......++.+++.+.+....... ....|+|+| |||| ++++.+.++++.+++.+ +..
T Consensus 6 ~~Cnl~C~~C~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~v~~~G-GEPll~~~~~~l~~~i~~~~~~~---~~~ 81 (119)
T PF13394_consen 6 SGCNLRCSYCYNKSSWSPKKGEEMSIEELEEIIDELKEKGFRPSTVVFTG-GEPLLYLNPEDLIELIEYLKERG---PEI 81 (119)
T ss_dssp S--S---TTTS-TTTSST-GGGS--HHHHHHHHHHHHHTT----EEEEES-SSGGGSTTHHHHHHHHCTSTT--------
T ss_pred CCcCCCCccCCcCccCCCccCCcccHhHHHHHHHHHHhcCCceEEEEEEC-CCCccccCHHHHHHHHHHHHhhC---CCc
Confidence 79999999999843 22345667777766665443322 236799999 9999 66788999999998875 236
Q ss_pred eEEEEeCCchhhHHHHhhhCCCceEEEEec
Q 017203 199 RITVSTVGIVHAINKFHSDLPGLNLAVSLH 228 (375)
Q Consensus 199 ~itisTnG~~~~i~~l~~~~~~v~laiSL~ 228 (375)
++.+.|||+.+..... .........||++
T Consensus 82 ~i~i~TNg~~~~~~~~-~~~~~~~~~ls~k 110 (119)
T PF13394_consen 82 KIRIETNGTLPTEEKI-EDWKNLEECLSIK 110 (119)
T ss_dssp EEEEEE-STTHHHHHH--------------
T ss_pred eEEEEeCCeeccccch-hhccccccccccc
Confidence 8999999998643332 2222334445544
No 63
>TIGR02826 RNR_activ_nrdG3 anaerobic ribonucleoside-triphosphate reductase activating protein. Members of this family represent a set of proteins related to, yet architecturally different from, the activating protein for the glycine radical-containing, oxygen-sensitive ribonucleoside-triphosphate reductase (RNR) as described in model TIGR02491. Members of this family are found paired with members of a similarly divergent set of anaerobic ribonucleoside-triphosphate reductases. Identification of this protein as an RNR activitating protein is partly from pairing with a candidate RNR. It is further supported by our finding that upstream of these operons are examples of a conserved regulatory element (described Rodionov and Gelfand) that is found in nearly all bacteria and that occurs specifically upstream of operons for all three classes of RNR genes.
Probab=99.42 E-value=9.1e-13 Score=114.03 Aligned_cols=91 Identities=23% Similarity=0.326 Sum_probs=72.5
Q ss_pred CCCCceEEEEeecCCCCCcCccccCCCC---CcccCCCHHHHHHHHHHhhhhCCcceEEEEeCCCcccCHHHHHHHHHHh
Q 017203 112 PGGPRSTLCISSQVGCKMGCNFCATGTM---GFKSNLSSGEIVEQLVHASRLSNIRNVVFMGMGEPLNNYAALVEAVRIM 188 (375)
Q Consensus 112 ~~~~r~tl~vssq~GCnl~C~fC~~~~~---~~~r~lt~~ei~~qi~~~~~~~~i~~Ivf~GmGEPlln~~~l~~~i~~l 188 (375)
|+..+.++++ .|||++|+||+|+.. .....++.+++++++..... .+.+|+|+| || ++++.+.++++.+
T Consensus 13 p~~~~~~vfl---~GCnlrC~~C~n~~~~~~~~g~~lt~eel~~~I~~~~~--~~~gVt~SG-GE--l~~~~l~~ll~~l 84 (147)
T TIGR02826 13 PNEYSLAFYI---TGCPLGCKGCHSPESWHLSEGTKLTPEYLTKTLDKYRS--LISCVLFLG-GE--WNREALLSLLKIF 84 (147)
T ss_pred CCCEEEEEEe---CCCCCCCCCCCChHHcCCCCCcCCCHHHHHHHHHHhCC--CCCEEEEec-hh--cCHHHHHHHHHHH
Confidence 3467899999 899999999999643 22457999999999887653 367999999 99 6778999999999
Q ss_pred hCCCCCCCCCeEEEEeCCchhhH-HHHh
Q 017203 189 TGLPFQVSPKRITVSTVGIVHAI-NKFH 215 (375)
Q Consensus 189 ~~~g~~i~~~~itisTnG~~~~i-~~l~ 215 (375)
++.| .++.+.|||+.+.+ ++++
T Consensus 85 k~~G-----l~i~l~Tg~~~~~~~~~il 107 (147)
T TIGR02826 85 KEKG-----LKTCLYTGLEPKDIPLELV 107 (147)
T ss_pred HHCC-----CCEEEECCCCCHHHHHHHH
Confidence 9887 56899999876432 3444
No 64
>PRK06256 biotin synthase; Validated
Probab=99.40 E-value=5.4e-11 Score=116.70 Aligned_cols=201 Identities=13% Similarity=0.145 Sum_probs=136.3
Q ss_pred CCCCCcCccccCCCCC-----cccCCCHHHHHHHHHHhhhhCCcceEEE-EeCCCcccC-HHHHHHHHHHhhCCCCCCCC
Q 017203 125 VGCKMGCNFCATGTMG-----FKSNLSSGEIVEQLVHASRLSNIRNVVF-MGMGEPLNN-YAALVEAVRIMTGLPFQVSP 197 (375)
Q Consensus 125 ~GCnl~C~fC~~~~~~-----~~r~lt~~ei~~qi~~~~~~~~i~~Ivf-~GmGEPlln-~~~l~~~i~~l~~~g~~i~~ 197 (375)
.|||.+|.||...... ..+.+++++|++.+..+.+. ++..+.| +|.++|... .+.+.++++.+++. .+
T Consensus 66 ~~C~~~C~fC~~~~~~~~~~~~~~~~s~eeI~~~~~~~~~~-g~~~~~l~~~g~~p~~~~~~~~~e~i~~i~~~-~~--- 140 (336)
T PRK06256 66 GLCPEDCGYCSQSAGSSAPVYRYAWLDIEELIEAAKEAIEE-GAGTFCIVASGRGPSGKEVDQVVEAVKAIKEE-TD--- 140 (336)
T ss_pred CCCCCCCccCCCcCCCCCCCceecCCCHHHHHHHHHHHHHC-CCCEEEEEecCCCCCchHHHHHHHHHHHHHhc-CC---
Confidence 8999999999886431 12458999999999887653 4444544 331456543 25788899999875 22
Q ss_pred CeEEEEeCCchh--hHHHHhhhCCCceEEEEecCCCHHHHhhhcCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEEeeCCC
Q 017203 198 KRITVSTVGIVH--AINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGV 275 (375)
Q Consensus 198 ~~itisTnG~~~--~i~~l~~~~~~v~laiSL~a~~~~~r~~i~p~~~~~~~~~vl~~l~~~~~~~g~~v~i~~vli~gv 275 (375)
.++.+ ++|... .+++|.+.+. ..+.+++++ +++.++.+.+ ..++++.+++++ .+++.|..+...+ +-|.
T Consensus 141 i~~~~-~~g~l~~e~l~~LkeaG~-~~v~~~lEt-s~~~~~~i~~---~~t~~~~i~~i~-~a~~~Gi~v~~~~--I~Gl 211 (336)
T PRK06256 141 LEICA-CLGLLTEEQAERLKEAGV-DRYNHNLET-SRSYFPNVVT---THTYEDRIDTCE-MVKAAGIEPCSGG--IIGM 211 (336)
T ss_pred CcEEe-cCCcCCHHHHHHHHHhCC-CEEecCCcc-CHHHHhhcCC---CCCHHHHHHHHH-HHHHcCCeeccCe--EEeC
Confidence 23333 356542 4567777653 467789999 8999988854 457899999995 5677887765543 3367
Q ss_pred CCCHHHHHHHHHHHhcCCCE-EEEeecCCCCCCCC---CCCCcHHHHHHHHHHHHhcCCceEEeccCCCc
Q 017203 276 NDEEQHAHQLGKLLETFQVV-VNLIPFNPIGSVSQ---FRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQ 341 (375)
Q Consensus 276 ND~~e~~~~L~~~l~~~~~~-vnLip~np~~~~~~---~~~~s~e~i~~f~~~l~~~~Gi~v~vR~~~g~ 341 (375)
+++.+++.+++.+++.+++. +.+.+|+|. ++++ .++++.+++.+....++- .--.+.||-+-|+
T Consensus 212 gEt~ed~~~~~~~l~~l~~~~v~i~~l~P~-pGT~l~~~~~~~~~e~l~~ia~~Rl-~~p~~~I~~~~gr 279 (336)
T PRK06256 212 GESLEDRVEHAFFLKELDADSIPINFLNPI-PGTPLENHPELTPLECLKTIAIFRL-INPDKEIRIAGGR 279 (336)
T ss_pred CCCHHHHHHHHHHHHhCCCCEEeecccccC-CCCCCCCCCCCCHHHHHHHHHHHHH-HCCCCeeEecCch
Confidence 89999999999999999864 666677776 3443 345677777777766662 2123445555444
No 65
>PRK14862 rimO ribosomal protein S12 methylthiotransferase; Provisional
Probab=99.39 E-value=2.3e-11 Score=123.46 Aligned_cols=182 Identities=15% Similarity=0.295 Sum_probs=126.3
Q ss_pred ceEEEEeecCCCCCcCccccCCCC-CcccCCCHHHHHHHHHHhhhhCCcceEEEEeC-----------------CCcccC
Q 017203 116 RSTLCISSQVGCKMGCNFCATGTM-GFKSNLSSGEIVEQLVHASRLSNIRNVVFMGM-----------------GEPLNN 177 (375)
Q Consensus 116 r~tl~vssq~GCnl~C~fC~~~~~-~~~r~lt~~ei~~qi~~~~~~~~i~~Ivf~Gm-----------------GEPlln 177 (375)
+...++.++.|||++|.||..+.. |..+..++++|++++..... .++..|+|+|. |+|+
T Consensus 138 ~~~a~v~isrGCp~~CsFC~ip~~~G~~rsr~~e~Vv~Ei~~l~~-~g~kei~l~~~d~~~yg~d~~~~~~~~~~~~~-- 214 (440)
T PRK14862 138 RHYAYLKISEGCNHRCTFCIIPSMRGDLVSRPIGDVLREAERLVK-AGVKELLVISQDTSAYGVDVKYRTGFWNGRPV-- 214 (440)
T ss_pred CcEEEEEeccCCCCCCccCCcccccCCccccCHHHHHHHHHHHHH-CCCceEEEEecChhhhccccccccccccccch--
Confidence 345667778999999999987643 34577899999999988765 35778888752 3344
Q ss_pred HHHHHHHHHHhhCCCCCCCCCeEE-EEeCCchhhHHHHhhhCCCc--eEEEEecCCCHHHHhhhcCCCCCCCHHHHHHHH
Q 017203 178 YAALVEAVRIMTGLPFQVSPKRIT-VSTVGIVHAINKFHSDLPGL--NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNAL 254 (375)
Q Consensus 178 ~~~l~~~i~~l~~~g~~i~~~~it-isTnG~~~~i~~l~~~~~~v--~laiSL~a~~~~~r~~i~p~~~~~~~~~vl~~l 254 (375)
.+.+.++++.+.+.|+ ..++. +.+++..+.+.++...+ .+ .+.|++.|.+++..+.+ ++.++.++.++++
T Consensus 215 ~~~~~~Ll~~l~~~~~---~~r~~~~~p~~~~dell~~m~~g-~~~~~l~IglESgs~~vLk~m---~r~~~~~~~~~~i 287 (440)
T PRK14862 215 KTRMTDLCEALGELGA---WVRLHYVYPYPHVDEVIPLMAEG-KILPYLDIPFQHASPRVLKRM---KRPASVEKTLERI 287 (440)
T ss_pred hhHHHHHHHHHHhcCC---EEEEecCCCCcCCHHHHHHHhcC-CCccccccccccCCHHHHHhc---CCCCCHHHHHHHH
Confidence 3578999999887663 12232 34555544443444333 34 57789999999887765 5678899999999
Q ss_pred HHHHHhcCCcEEEEEEe-eCCCCCCHHHHHHHHHHHhcCCC-EEEEeecCCCCCCCC
Q 017203 255 KEYQKNSQQKIFIEYIM-LDGVNDEEQHAHQLGKLLETFQV-VVNLIPFNPIGSVSQ 309 (375)
Q Consensus 255 ~~~~~~~g~~v~i~~vl-i~gvND~~e~~~~L~~~l~~~~~-~vnLip~np~~~~~~ 309 (375)
+.+ ++....+.+...+ +.-.++++++++++.+|+++++. .+++.+|.|. ++++
T Consensus 288 ~~l-r~~~~~i~i~t~~IvGfPgET~edf~~tl~fi~e~~~d~~~~f~ysP~-pGT~ 342 (440)
T PRK14862 288 KKW-REICPDLTIRSTFIVGFPGETEEDFQMLLDFLKEAQLDRVGCFKYSPV-EGAT 342 (440)
T ss_pred HHH-HHHCCCceecccEEEECCCCCHHHHHHHHHHHHHcCCCeeeeEeecCC-CCCc
Confidence 654 4443344444333 33357899999999999999986 4788888887 3443
No 66
>PRK14338 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=99.38 E-value=4.2e-11 Score=122.19 Aligned_cols=183 Identities=15% Similarity=0.298 Sum_probs=129.6
Q ss_pred ceEEEEeecCCCCCcCccccCCC-CCcccCCCHHHHHHHHHHhhhhCCcceEEEEe-----CCCcccCHHHHHHHHHHhh
Q 017203 116 RSTLCISSQVGCKMGCNFCATGT-MGFKSNLSSGEIVEQLVHASRLSNIRNVVFMG-----MGEPLNNYAALVEAVRIMT 189 (375)
Q Consensus 116 r~tl~vssq~GCnl~C~fC~~~~-~~~~r~lt~~ei~~qi~~~~~~~~i~~Ivf~G-----mGEPlln~~~l~~~i~~l~ 189 (375)
+..+++..|.|||++|.||..+. .+..+..+++++++++..... .++..|+|+| .|+|+.+.+.+.++++.+.
T Consensus 154 ~~~~~i~I~rGC~~~CsfC~~p~~~G~~rsr~~e~Il~ei~~l~~-~G~keI~l~g~~~~~yG~d~~~~~~l~~Ll~~l~ 232 (459)
T PRK14338 154 PVTVHVPIIYGCNMSCSYCVIPLRRGRERSRPLAEIVEEVRRIAA-RGAKEITLLGQIVDSYGHDLPGRPDLADLLEAVH 232 (459)
T ss_pred ceEEEEEcccCCCCCCCcCCeeccCCCCccCCHHHHHHHHHHHHH-CCCeEEEEeeecCCCcccccCChHHHHHHHHHHH
Confidence 46778888899999999998764 344578899999999988765 3678999998 4777755456888998888
Q ss_pred CC-CCCCCCCeEEEEe-CC--chhh-HHHHhhhC-CCceEEEEecCCCHHHHhhhcCCCCCCCHHHHHHHHHHHHHhcCC
Q 017203 190 GL-PFQVSPKRITVST-VG--IVHA-INKFHSDL-PGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQ 263 (375)
Q Consensus 190 ~~-g~~i~~~~itisT-nG--~~~~-i~~l~~~~-~~v~laiSL~a~~~~~r~~i~p~~~~~~~~~vl~~l~~~~~~~g~ 263 (375)
+. |+ .++.+.| +. +.+. ++.+++.. ....+.+++.+.+++..+.+ ++.++.++++++++.+ ++...
T Consensus 233 ~~~gi----~~ir~~~~~p~~i~~ell~~l~~~~~~~~~v~lglQSgsd~vLk~m---~R~~t~e~~~~~i~~l-r~~~p 304 (459)
T PRK14338 233 EIPGL----ERLRFLTSHPAWMTDRLIHAVARLPKCCPHINLPVQAGDDEVLKRM---RRGYTVARYRELIARI-REAIP 304 (459)
T ss_pred hcCCc----ceEEEEecChhhcCHHHHHHHhcccccccceecCcccCCHHHHHhc---cCCCCHHHHHHHHHHH-HHhCC
Confidence 74 42 2455443 43 2223 33333321 12357788999999988776 5668999999999654 45433
Q ss_pred cEEEEEE-eeCCCCCCHHHHHHHHHHHhcCCC-EEEEeecCCCCCCC
Q 017203 264 KIFIEYI-MLDGVNDEEQHAHQLGKLLETFQV-VVNLIPFNPIGSVS 308 (375)
Q Consensus 264 ~v~i~~v-li~gvND~~e~~~~L~~~l~~~~~-~vnLip~np~~~~~ 308 (375)
.+.+..- ++...+++.+++.+++++++.++. .+++.+|.|. +++
T Consensus 305 gi~i~~d~IvG~PgET~ed~~~ti~~l~~l~~~~v~i~~ysp~-pGT 350 (459)
T PRK14338 305 DVSLTTDIIVGHPGETEEQFQRTYDLLEEIRFDKVHIAAYSPR-PGT 350 (459)
T ss_pred CCEEEEEEEEECCCCCHHHHHHHHHHHHHcCCCEeEEEecCCC-CCC
Confidence 4444433 333356899999999999999986 4888888887 444
No 67
>COG0602 NrdG Organic radical activating enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=99.36 E-value=1.5e-12 Score=119.42 Aligned_cols=85 Identities=27% Similarity=0.474 Sum_probs=69.6
Q ss_pred CceEEEEeecCCCCCcCccccCCCC------CcccCCCHHHHHHHHHHhhhhCCcceEEEEeCCCcccCHHHHHHHHHHh
Q 017203 115 PRSTLCISSQVGCKMGCNFCATGTM------GFKSNLSSGEIVEQLVHASRLSNIRNVVFMGMGEPLNNYAALVEAVRIM 188 (375)
Q Consensus 115 ~r~tl~vssq~GCnl~C~fC~~~~~------~~~r~lt~~ei~~qi~~~~~~~~i~~Ivf~GmGEPlln~~~l~~~i~~l 188 (375)
+|.++||++ .|||++|.||.|... ......+.++|++++..... ...+|+|+| |||+++ +++.++++.+
T Consensus 21 Gr~~vFVR~-~GC~l~C~~Cdt~~t~~~~~~~~~~~~~~~~I~~~i~~~~~--~~~~V~lTG-GEP~~~-~~l~~Ll~~l 95 (212)
T COG0602 21 GRPSVFVRF-AGCNLRCPGCDTKYTWDFNYGKPGTPMSADEILADIKSLGY--KARGVSLTG-GEPLLQ-PNLLELLELL 95 (212)
T ss_pred cceeEEEEc-CCCCCCCCCCCChhhhcccccCCCCccCHHHHHHHHHhcCC--CcceEEEeC-CcCCCc-ccHHHHHHHH
Confidence 689999966 699999999998522 12356889999999987542 345999999 999776 5799999999
Q ss_pred hCCCCCCCCCeEEEEeCCchh
Q 017203 189 TGLPFQVSPKRITVSTVGIVH 209 (375)
Q Consensus 189 ~~~g~~i~~~~itisTnG~~~ 209 (375)
++.| .++.+.|||..+
T Consensus 96 ~~~g-----~~~~lETngti~ 111 (212)
T COG0602 96 KRLG-----FRIALETNGTIP 111 (212)
T ss_pred HhCC-----ceEEecCCCCcc
Confidence 9888 679999999875
No 68
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=99.36 E-value=5.2e-11 Score=122.75 Aligned_cols=175 Identities=13% Similarity=0.152 Sum_probs=129.0
Q ss_pred EEeecCCCCCcCccccCCCCC-cccCCCHHHHHHHHHHhhhhCCcceEEEEeCCCcccCHHHHHHHHHHhhCCC-CCCCC
Q 017203 120 CISSQVGCKMGCNFCATGTMG-FKSNLSSGEIVEQLVHASRLSNIRNVVFMGMGEPLNNYAALVEAVRIMTGLP-FQVSP 197 (375)
Q Consensus 120 ~vssq~GCnl~C~fC~~~~~~-~~r~lt~~ei~~qi~~~~~~~~i~~Ivf~GmGEPlln~~~l~~~i~~l~~~g-~~i~~ 197 (375)
.+.++.|||++|.||..+... ..|..+++.+++++....+..++..|.|.+ .+|+++.+.+.++++.+.+.+ ++
T Consensus 196 ~i~tSRGCp~~C~FC~~~~~~~~~R~rs~e~Vv~Ei~~l~~~~gv~~~~~~D-d~f~~~~~~~~~l~~~l~~~~~l~--- 271 (497)
T TIGR02026 196 VPNFARGCPFTCNFCSQWKFWRRYRHRDPKKFVDEIEWLVRTHGVGFFILAD-EEPTINRKKFQEFCEEIIARNPIS--- 271 (497)
T ss_pred eeeccCCCCCCCCCCCCCCCCceeecCCHHHHHHHHHHHHHHcCCCEEEEEe-cccccCHHHHHHHHHHHHhcCCCC---
Confidence 345569999999999887542 346678999999999876545788999999 999999989999999998764 33
Q ss_pred CeEEEEeCC--c--hhh-HHHHhhhCCCceEEEEecCCCHHHHhhhcCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEEee
Q 017203 198 KRITVSTVG--I--VHA-INKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIML 272 (375)
Q Consensus 198 ~~itisTnG--~--~~~-i~~l~~~~~~v~laiSL~a~~~~~r~~i~p~~~~~~~~~vl~~l~~~~~~~g~~v~i~~vli 272 (375)
.+..++|.. + .+. ++.+.+.+ -..+.+.+.+.+++..+.+ ++..+.+++.+++ +.+++.|..+...++ +
T Consensus 272 i~w~~~~r~~~i~~d~ell~~l~~aG-~~~v~iGiES~~~~~L~~~---~K~~t~~~~~~ai-~~l~~~Gi~~~~~~I-~ 345 (497)
T TIGR02026 272 VTWGINTRVTDIVRDADILHLYRRAG-LVHISLGTEAAAQATLDHF---RKGTTTSTNKEAI-RLLRQHNILSEAQFI-T 345 (497)
T ss_pred eEEEEecccccccCCHHHHHHHHHhC-CcEEEEccccCCHHHHHHh---cCCCCHHHHHHHH-HHHHHCCCcEEEEEE-E
Confidence 233344432 2 122 34445544 4578899999999887776 5677899999999 567788988766543 3
Q ss_pred CCCCCCHHHHHHHHHHHhcCCCE-EEEeecCCC
Q 017203 273 DGVNDEEQHAHQLGKLLETFQVV-VNLIPFNPI 304 (375)
Q Consensus 273 ~gvND~~e~~~~L~~~l~~~~~~-vnLip~np~ 304 (375)
.-.+++.+++++.++++..++.. +++..+.|.
T Consensus 346 G~P~et~e~~~~t~~~~~~l~~~~~~~~~~tP~ 378 (497)
T TIGR02026 346 GFENETDETFEETYRQLLDWDPDQANWLMYTPW 378 (497)
T ss_pred ECCCCCHHHHHHHHHHHHHcCCCceEEEEecCC
Confidence 34578999999999999988753 454445554
No 69
>PRK11121 nrdG anaerobic ribonucleotide reductase-activating protein; Provisional
Probab=99.36 E-value=3.9e-12 Score=111.10 Aligned_cols=87 Identities=21% Similarity=0.327 Sum_probs=58.2
Q ss_pred CCCceEEEEeecCCCCCcCccccCCCCC---cccCCCHHHHHHHHHHhhhhC--CcceEEEEeCCCcccC--HHHHHHHH
Q 017203 113 GGPRSTLCISSQVGCKMGCNFCATGTMG---FKSNLSSGEIVEQLVHASRLS--NIRNVVFMGMGEPLNN--YAALVEAV 185 (375)
Q Consensus 113 ~~~r~tl~vssq~GCnl~C~fC~~~~~~---~~r~lt~~ei~~qi~~~~~~~--~i~~Ivf~GmGEPlln--~~~l~~~i 185 (375)
+|.|.++|+ .|||++|+||++...- .....+ .+.++++....... ...+|+|+| ||||++ .+.+.+++
T Consensus 15 pG~r~~if~---~GCnl~C~~C~n~~~~~~~~g~~~~-~~~~~~il~~~~~~~~~~~gvt~sG-GEPl~~~~~~~l~~l~ 89 (154)
T PRK11121 15 PGTRCTLFV---SGCVHQCPGCYNKSTWRLNSGHPFT-KEMEDQIIADLNDTRIKRQGLSLSG-GDPLHPQNVPDILKLV 89 (154)
T ss_pred CCcEEEEEc---CCCCCcCcCCCChhhccCCCCcccC-HHHHHHHHHHHHHhCCCCCcEEEEC-CCccchhhHHHHHHHH
Confidence 457999999 8999999999996531 123345 33444444332212 237999999 999984 47788888
Q ss_pred HHhhCCCCCCCCCeEEEEeCCch
Q 017203 186 RIMTGLPFQVSPKRITVSTVGIV 208 (375)
Q Consensus 186 ~~l~~~g~~i~~~~itisTnG~~ 208 (375)
+.+++.- +...| +.|||+.
T Consensus 90 ~~~k~~~---~~~~i-~~~tGy~ 108 (154)
T PRK11121 90 QRVKAEC---PGKDI-WVWTGYK 108 (154)
T ss_pred HHHHHHC---CCCCE-EEecCCC
Confidence 8887641 11234 4579986
No 70
>COG1509 KamA Lysine 2,3-aminomutase [Amino acid transport and metabolism]
Probab=99.33 E-value=1.4e-10 Score=111.58 Aligned_cols=206 Identities=19% Similarity=0.253 Sum_probs=128.8
Q ss_pred ceEEEEeecCCCCCcCccccCCCCCcc--cCCCHHHHHHHHHHhhhhCCcceEEEEeCCCcccC-HHHHHHHHHHhhCCC
Q 017203 116 RSTLCISSQVGCKMGCNFCATGTMGFK--SNLSSGEIVEQLVHASRLSNIRNVVFMGMGEPLNN-YAALVEAVRIMTGLP 192 (375)
Q Consensus 116 r~tl~vssq~GCnl~C~fC~~~~~~~~--r~lt~~ei~~qi~~~~~~~~i~~Ivf~GmGEPlln-~~~l~~~i~~l~~~g 192 (375)
|.-+.++ .+|++.|+||+...+... ..++.+++-..+..++....|..|.||| |+||+- ...+..+++.+.+-.
T Consensus 112 rvLll~t--~~C~vyCRyCfRr~~~~~~~~~~~~~~~~~al~YIa~hPeI~eVllSG-GDPL~ls~~~L~~ll~~L~~Ip 188 (369)
T COG1509 112 RVLLLVT--GVCAVYCRYCFRRRFVGQDNQGFNKEEWDKALDYIAAHPEIREVLLSG-GDPLSLSDKKLEWLLKRLRAIP 188 (369)
T ss_pred eEEEEec--CcccceeeecccccccccccccCCHHHHHHHHHHHHcCchhheEEecC-CCccccCHHHHHHHHHHHhcCC
Confidence 4444443 889999999998654322 2256777777777777667899999999 999985 346777777777652
Q ss_pred CCCCCCeEEEEeCCch--h-hH-HHHhhhCCC--ceEEEEecCCCHHHHhhhcCCCCCCCHHHHHHHHHHHHHhcCCcEE
Q 017203 193 FQVSPKRITVSTVGIV--H-AI-NKFHSDLPG--LNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIF 266 (375)
Q Consensus 193 ~~i~~~~itisTnG~~--~-~i-~~l~~~~~~--v~laiSL~a~~~~~r~~i~p~~~~~~~~~vl~~l~~~~~~~g~~v~ 266 (375)
....|.|-|-..+ | +| ..|.+.+.. ..+.+..|.-.+ .+|+ .+..+|+ +.+...|..+.
T Consensus 189 ---Hv~iiRi~TR~pvv~P~RIt~~L~~~l~~~~~~v~~~tH~NHp---~Eit--------~e~~~A~-~~L~~aGv~l~ 253 (369)
T COG1509 189 ---HVKIIRIGTRLPVVLPQRITDELCEILGKSRKPVWLVTHFNHP---NEIT--------PEAREAC-AKLRDAGVPLL 253 (369)
T ss_pred ---ceeEEEeecccceechhhccHHHHHHHhccCceEEEEcccCCh---hhcC--------HHHHHHH-HHHHHcCceee
Confidence 0134666666532 3 22 333333211 345555444332 2343 3555666 45678899999
Q ss_pred EEEEeeCCCCCCHHHHHHHHHHHhcCCCE-EEEeecCCCCCCCCCCCCcHHHHHHHHH---HHHhcCCceEEeccCCC
Q 017203 267 IEYIMLDGVNDEEQHAHQLGKLLETFQVV-VNLIPFNPIGSVSQFRTSSDDKVSSFQK---ILRGSYNIRTTVRKQMG 340 (375)
Q Consensus 267 i~~vli~gvND~~e~~~~L~~~l~~~~~~-vnLip~np~~~~~~~~~~s~e~i~~f~~---~l~~~~Gi~v~vR~~~g 340 (375)
-+.||++||||+.+-+.+|.+-+...++. ..|-...+......|..|..+..+-+.. .+. .+.+.+.++.-.|
T Consensus 254 NQsVLLrGVND~~evl~~L~~~L~~~gV~PYYl~~~D~~~G~~hfr~~i~~~~~i~~~lr~~~S-G~~~P~~v~d~pg 330 (369)
T COG1509 254 NQSVLLRGVNDDPEVLKELSRALFDAGVKPYYLHQLDLVQGAAHFRVPIAEGLQIVEELRGRTS-GYAVPTLVVDIPG 330 (369)
T ss_pred cchheecccCCCHHHHHHHHHHHHHcCCcceEEeccCccCCccceeccHHHHHHHHHHHHHhCC-CcccceeEEecCC
Confidence 99999999999999999999988887753 3333334442234676665444333332 333 3555566665444
No 71
>TIGR02351 thiH thiazole biosynthesis protein ThiH. Members this protein family are the ThiH protein of thiamine biosynthesis, a homolog of the BioB protein of biotin biosynthesis. Genes for the this protein generally are found in operons with other thiamin biosynthesis genes.
Probab=99.32 E-value=1.7e-10 Score=114.47 Aligned_cols=191 Identities=13% Similarity=0.149 Sum_probs=132.7
Q ss_pred ecCCCCCcCccccCCCC-Cc-ccCCCHHHHHHHHHHhhhhCCcceEEEEeCCCcc--cCHHHHHHHHHHhhCCCCCCCCC
Q 017203 123 SQVGCKMGCNFCATGTM-GF-KSNLSSGEIVEQLVHASRLSNIRNVVFMGMGEPL--NNYAALVEAVRIMTGLPFQVSPK 198 (375)
Q Consensus 123 sq~GCnl~C~fC~~~~~-~~-~r~lt~~ei~~qi~~~~~~~~i~~Ivf~GmGEPl--ln~~~l~~~i~~l~~~g~~i~~~ 198 (375)
.+.+|+.+|.||.-... .. ...++.+||.+.+..+.. .++..|.+.| ||+. ...+.+.++++.+++.. .
T Consensus 79 ~Tn~C~~~C~yC~~s~~~~~~~~~Ls~eEI~~~a~~~~~-~Gv~~i~lvg-Ge~p~~~~~e~l~eii~~Ik~~~-----p 151 (366)
T TIGR02351 79 LSNYCSNKCVYCGFSMSNKIKRKKLNEEEIEREIEAIKK-SGFKEILLVT-GESEKAAGVEYIAEAIKLAREYF-----S 151 (366)
T ss_pred ECccccCCCCcCCCCCCCCCccCcCCHHHHHHHHHHHHh-CCCCEEEEee-CCCCCCCCHHHHHHHHHHHHHhC-----C
Confidence 34899999999987532 11 245899999999988766 4689999888 8743 45778999999998652 1
Q ss_pred eEEEEeCCch-hhHHHHhhhCCCceEEEEecCCCHHHHhhhcCCCCCCCHHHHHHHHHHHHHhcCCc-EEEEEEeeCCCC
Q 017203 199 RITVSTVGIV-HAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQK-IFIEYIMLDGVN 276 (375)
Q Consensus 199 ~itisTnG~~-~~i~~l~~~~~~v~laiSL~a~~~~~r~~i~p~~~~~~~~~vl~~l~~~~~~~g~~-v~i~~vli~gvN 276 (375)
.+.++.+-+. ..+++|.+.+. ..+.+++++.+++.+.++.|..++.+++..+++++ .+++.|.+ |. .-+|-|++
T Consensus 152 ~i~Iei~~lt~e~~~~Lk~aGv-~r~~i~lET~~~~~y~~i~~~g~~h~~~~rl~~i~-~a~~aG~~~v~--~g~i~Gl~ 227 (366)
T TIGR02351 152 SLAIEVQPLNEEEYKKLVEAGL-DGVTVYQETYNEKKYKKHHLAGKKKDFRYRLNTPE-RAAKAGMRKIG--IGALLGLD 227 (366)
T ss_pred ccccccccCCHHHHHHHHHcCC-CEEEEEeecCCHHHHHhcCcCCCCCCHHHHHHHHH-HHHHcCCCeec--eeEEEeCc
Confidence 1223322222 35678888763 57999999999999999987666778999999995 55677765 44 46677899
Q ss_pred CCHHHHHHHHHHHhcCCC-------EEEEeecCCCCCCCCC---CCCcHHHHHHHHHHHH
Q 017203 277 DEEQHAHQLGKLLETFQV-------VVNLIPFNPIGSVSQF---RTSSDDKVSSFQKILR 326 (375)
Q Consensus 277 D~~e~~~~L~~~l~~~~~-------~vnLip~np~~~~~~~---~~~s~e~i~~f~~~l~ 326 (375)
++.++.-.++..++.++. .|.++-++|. ++ ++ .+.+..++.+....++
T Consensus 228 e~~~d~~~~a~~l~~L~~~~~~~~~sv~~~~l~P~-~g-~~~~~~~l~~~~~~~~i~~~R 285 (366)
T TIGR02351 228 DWRTDAFFTAYHLRYLQKKYWKTEISISVPRLRPC-TN-GLKPKVIVTDRELVQIICAYR 285 (366)
T ss_pred hhHHHHHHHHHHHHHHHHHcCCCCccccccccccC-CC-CCCCCCcCCHHHHHHHHHHHH
Confidence 999998888888765543 3444445666 33 33 3344555555544444
No 72
>TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ. One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift.
Probab=99.30 E-value=2.6e-10 Score=116.85 Aligned_cols=174 Identities=13% Similarity=0.140 Sum_probs=125.5
Q ss_pred EEEeecCCCCCcCccccCCCC--C-cccCCCHHHHHHHHHHhhhhC-CcceEEEEeCCCcccCHHHHHHHHHHhhCCCCC
Q 017203 119 LCISSQVGCKMGCNFCATGTM--G-FKSNLSSGEIVEQLVHASRLS-NIRNVVFMGMGEPLNNYAALVEAVRIMTGLPFQ 194 (375)
Q Consensus 119 l~vssq~GCnl~C~fC~~~~~--~-~~r~lt~~ei~~qi~~~~~~~-~i~~Ivf~GmGEPlln~~~l~~~i~~l~~~g~~ 194 (375)
+.+.++.||+++|.||..+.. + ..|..+++.+++++....... ++..|.|.+ +.++.+.+.+.++++.+++.++
T Consensus 198 ~~i~tsRGCp~~C~FC~~~~~~~g~~~r~rs~e~V~~Ei~~~~~~~~~~~~i~f~D-d~f~~~~~~~~~l~~~l~~~~i- 275 (472)
T TIGR03471 198 ISLYTGRGCPSKCTFCLWPQTVGGHRYRTRSAESVIEEVKYALENFPEVREFFFDD-DTFTDDKPRAEEIARKLGPLGV- 275 (472)
T ss_pred EEEEecCCCCCCCCCCCCCccCCCCceEeCCHHHHHHHHHHHHHhcCCCcEEEEeC-CCCCCCHHHHHHHHHHHhhcCc-
Confidence 456667999999999986532 2 236679999999998766533 578898988 8888888889999999986552
Q ss_pred CCCCeEEEEeCC-chh-hHHHHhhhCCCceEEEEecCCCHHHHhhhcCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEEee
Q 017203 195 VSPKRITVSTVG-IVH-AINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIML 272 (375)
Q Consensus 195 i~~~~itisTnG-~~~-~i~~l~~~~~~v~laiSL~a~~~~~r~~i~p~~~~~~~~~vl~~l~~~~~~~g~~v~i~~vli 272 (375)
.....+.. +.+ .++.+++.+ ...+.+.+.+.+++..+.+ +++.+.+++.+++ +.+++.|..+...+++
T Consensus 276 ----~~~~~~~~~~~~e~l~~l~~aG-~~~v~iGiES~s~~~L~~~---~K~~~~~~~~~~i-~~~~~~Gi~v~~~~Ii- 345 (472)
T TIGR03471 276 ----TWSCNARANVDYETLKVMKENG-LRLLLVGYESGDQQILKNI---KKGLTVEIARRFT-RDCHKLGIKVHGTFIL- 345 (472)
T ss_pred ----eEEEEecCCCCHHHHHHHHHcC-CCEEEEcCCCCCHHHHHHh---cCCCCHHHHHHHH-HHHHHCCCeEEEEEEE-
Confidence 22333322 233 345555554 3568899999999988876 5667889999999 5667888887765543
Q ss_pred CCCCCCHHHHHHHHHHHhcCCCE-EEEeecCCC
Q 017203 273 DGVNDEEQHAHQLGKLLETFQVV-VNLIPFNPI 304 (375)
Q Consensus 273 ~gvND~~e~~~~L~~~l~~~~~~-vnLip~np~ 304 (375)
.-.+++.+++.+.++++.+++.. +.+..+.|.
T Consensus 346 GlPget~e~~~~ti~~~~~l~~~~~~~~~l~P~ 378 (472)
T TIGR03471 346 GLPGETRETIRKTIDFAKELNPHTIQVSLAAPY 378 (472)
T ss_pred eCCCCCHHHHHHHHHHHHhcCCCceeeeecccC
Confidence 33468999999999999988743 444444444
No 73
>TIGR03551 F420_cofH 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofH subunit. This enzyme, together with CofG, complete the biosynthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, the chromophore of coenzyme F420. The chromophore is also used in cyanobacteria DNA photolyases.
Probab=99.30 E-value=2.7e-10 Score=112.14 Aligned_cols=193 Identities=17% Similarity=0.185 Sum_probs=133.1
Q ss_pred EeecCCCCCcCccccCCCCC---cccCCCHHHHHHHHHHhhhhCCcceEEEEeCC-CcccCHHHHHHHHHHhhCCCCCCC
Q 017203 121 ISSQVGCKMGCNFCATGTMG---FKSNLSSGEIVEQLVHASRLSNIRNVVFMGMG-EPLNNYAALVEAVRIMTGLPFQVS 196 (375)
Q Consensus 121 vssq~GCnl~C~fC~~~~~~---~~r~lt~~ei~~qi~~~~~~~~i~~Ivf~GmG-EPlln~~~l~~~i~~l~~~g~~i~ 196 (375)
+..+.+|+.+|.||...... ....+++++|++.+..+.. .++..|.|+| | +|.+..+.+.++++.+++.+.+
T Consensus 43 i~~T~~C~~~C~FC~~~~~~~~~~~y~ls~eeI~e~~~~~~~-~G~~~i~l~g-G~~p~~~~~~~~~i~~~Ik~~~~~-- 118 (343)
T TIGR03551 43 INFTNVCYGGCGFCAFRKRKGDADAYLLSLEEIAERAAEAWK-AGATEVCIQG-GIHPDLDGDFYLDILRAVKEEVPG-- 118 (343)
T ss_pred cccccccccCCccCCCccCCCCCCcccCCHHHHHHHHHHHHH-CCCCEEEEEe-CCCCCCCHHHHHHHHHHHHHHCCC--
Confidence 34458999999999875421 1134899999999988776 4789999998 7 7778888899999999976422
Q ss_pred CCeEEEE----------eCCchh--hHHHHhhhCCCceEE-EEecCCCHHHHhhhcCCCCCCCHHHHHHHHHHHHHhcCC
Q 017203 197 PKRITVS----------TVGIVH--AINKFHSDLPGLNLA-VSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQ 263 (375)
Q Consensus 197 ~~~itis----------TnG~~~--~i~~l~~~~~~v~la-iSL~a~~~~~r~~i~p~~~~~~~~~vl~~l~~~~~~~g~ 263 (375)
.++... ++|... .+++|.+.+. ..+. .+....+++.|.++.|. +.+.++.++++ +.+++.|.
T Consensus 119 -i~~~~~t~~ei~~~~~~~g~~~~e~l~~LkeAGl-~~i~~~~~E~~~~~v~~~i~~~--~~~~~~~~~~i-~~a~~~Gi 193 (343)
T TIGR03551 119 -MHIHAFSPMEVYYGARNSGLSVEEALKRLKEAGL-DSMPGTAAEILDDEVRKVICPD--KLSTAEWIEII-KTAHKLGI 193 (343)
T ss_pred -ceEEecCHHHHHHHHHHcCCCHHHHHHHHHHhCc-ccccCcchhhcCHHHHHhcCCC--CCCHHHHHHHH-HHHHHcCC
Confidence 334432 567642 4678888753 2333 34566778889888763 34788889999 56788888
Q ss_pred cEEEEEEeeCCCCCCHHHHHHHHHHHhcCCCE----EEEeecC--CCCCCCCC-------CCCcHHHHHHHHHHHH
Q 017203 264 KIFIEYIMLDGVNDEEQHAHQLGKLLETFQVV----VNLIPFN--PIGSVSQF-------RTSSDDKVSSFQKILR 326 (375)
Q Consensus 264 ~v~i~~vli~gvND~~e~~~~L~~~l~~~~~~----vnLip~n--p~~~~~~~-------~~~s~e~i~~f~~~l~ 326 (375)
++..- ++-|..++.++..+.+.++++++.. ..++|+| |. ++++ ++.+.++..+.....+
T Consensus 194 ~v~s~--~i~G~~Et~ed~~~~l~~lr~l~~~~~~~~~~iP~~f~~~--gT~l~~~~~~~~~~~~~~~lr~iAv~R 265 (343)
T TIGR03551 194 PTTAT--IMYGHVETPEHWVDHLLILREIQEETGGFTEFVPLPFVHY--NAPLYLKGMARPGPTGREDLKVHAIAR 265 (343)
T ss_pred cccce--EEEecCCCHHHHHHHHHHHHHhhHHhCCeeEEEeccccCC--CCccccccCCCCCCCHHHHHHHHHHHH
Confidence 77553 3336668999999999999988653 2355654 32 2222 2346666666666554
No 74
>TIGR00089 RNA modification enzyme, MiaB family. This subfamily is aparrently a part of a larger superfamily of enzymes utilizing both a 4Fe4S cluster and S-adenosyl methionine (SAM) to initiate radical reactions. MiaB acts on a particular isoprenylated Adenine base of certain tRNAs causing thiolation at an aromatic carbon, and probably also transferring a methyl grouyp from SAM to the thiol. The particular substrate of the three other clades is unknown but may be very closely related.
Probab=99.29 E-value=2.8e-10 Score=115.25 Aligned_cols=184 Identities=14% Similarity=0.298 Sum_probs=126.9
Q ss_pred ceEEEEeecCCCCCcCccccCCC-CCcccCCCHHHHHHHHHHhhhhCCcceEEEEe-----CCCcccCHHHHHHHHHHhh
Q 017203 116 RSTLCISSQVGCKMGCNFCATGT-MGFKSNLSSGEIVEQLVHASRLSNIRNVVFMG-----MGEPLNNYAALVEAVRIMT 189 (375)
Q Consensus 116 r~tl~vssq~GCnl~C~fC~~~~-~~~~r~lt~~ei~~qi~~~~~~~~i~~Ivf~G-----mGEPlln~~~l~~~i~~l~ 189 (375)
+...++.++.|||++|.||..+. .+..+..++++|++++..... .++..|+|+| .|..+.+...+.++++.++
T Consensus 138 ~~~~~i~~srGC~~~CsfC~~~~~~g~~r~r~~e~Vv~Ei~~l~~-~g~~ei~l~~~~~~~yg~d~~~~~~l~~Ll~~l~ 216 (429)
T TIGR00089 138 KTRAFLKIQEGCDKFCTYCIVPYARGRERSRPPEDILEEVKELVS-KGVKEIVLLGQNVGAYGKDLKGETNLADLLRELS 216 (429)
T ss_pred CeEEEEEHHhCcCCCCCcCceecccCCCCCCCHHHHHHHHHHHHH-CCCceEEEEeeccccccCCCCCCcCHHHHHHHHh
Confidence 35567778899999999999864 235578899999999998765 3678899887 2343332234777777776
Q ss_pred CC-CCCCCCCeEEEEeC---CchhhH-HHHhhhC-CCceEEEEecCCCHHHHhhhcCCCCCCCHHHHHHHHHHHHHhcCC
Q 017203 190 GL-PFQVSPKRITVSTV---GIVHAI-NKFHSDL-PGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQ 263 (375)
Q Consensus 190 ~~-g~~i~~~~itisTn---G~~~~i-~~l~~~~-~~v~laiSL~a~~~~~r~~i~p~~~~~~~~~vl~~l~~~~~~~g~ 263 (375)
+. |. ..+.+.+. .+.+.+ +.+++.. ....+.+.+.+.+++..+.+ ++.++.+++.++++ .+++.+.
T Consensus 217 ~~~g~----~~i~~~~~~p~~i~~ell~~m~~~~~~~~~l~igiES~s~~vLk~m---~R~~~~~~~~~~i~-~lr~~~~ 288 (429)
T TIGR00089 217 KIDGI----ERIRFGSSHPDDVTDDLIELIAENPKVCKHLHLPVQSGSDRILKRM---NRKYTREEYLDIVE-KIRAKIP 288 (429)
T ss_pred cCCCC----CEEEECCCChhhcCHHHHHHHHhCCCccCceeeccccCChHHHHhC---CCCCCHHHHHHHHH-HHHHHCC
Confidence 64 42 34555442 223333 3333332 12358889999999887764 56788999999995 4556664
Q ss_pred cEEEEEEeeCC-CCCCHHHHHHHHHHHhcCCC-EEEEeecCCCCCCCC
Q 017203 264 KIFIEYIMLDG-VNDEEQHAHQLGKLLETFQV-VVNLIPFNPIGSVSQ 309 (375)
Q Consensus 264 ~v~i~~vli~g-vND~~e~~~~L~~~l~~~~~-~vnLip~np~~~~~~ 309 (375)
.+.+..-+|=| .+++++++.++++|+.+++. .+++.+|.|. ++++
T Consensus 289 ~i~i~~~~IvG~PgET~ed~~~tl~~i~~~~~~~~~~~~~sp~-pgT~ 335 (429)
T TIGR00089 289 DAAITTDIIVGFPGETEEDFEETLDLVEEVKFDKLHSFIYSPR-PGTP 335 (429)
T ss_pred CCEEEeeEEEECCCCCHHHHHHHHHHHHhcCCCEeeccccCCC-CCCc
Confidence 45554444444 47899999999999999985 5888888887 4544
No 75
>PRK05481 lipoyl synthase; Provisional
Probab=99.29 E-value=5.4e-10 Score=107.40 Aligned_cols=202 Identities=14% Similarity=0.156 Sum_probs=137.1
Q ss_pred eEEEEeecCCCCCcCccccCCCCCcccCCCHHHHHHHHHHhhhhCCcceEEEEeCCC----cccCHHHHHHHHHHhhCCC
Q 017203 117 STLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSNIRNVVFMGMGE----PLNNYAALVEAVRIMTGLP 192 (375)
Q Consensus 117 ~tl~vssq~GCnl~C~fC~~~~~~~~r~lt~~ei~~qi~~~~~~~~i~~Ivf~GmGE----Plln~~~l~~~i~~l~~~g 192 (375)
...++..+.||+.+|.||.-+... .+.+++++|++++..... .+++.|+|+| |+ |....+.+.++++.+++..
T Consensus 53 ~~~fi~is~GC~~~C~FC~i~~~r-~~s~~~eeI~~ea~~l~~-~G~kEI~L~g-g~~~d~~~~~~~~l~~Ll~~I~~~~ 129 (289)
T PRK05481 53 TATFMILGDICTRRCPFCDVATGR-PLPLDPDEPERVAEAVAR-MGLKYVVITS-VDRDDLPDGGAQHFAETIRAIRELN 129 (289)
T ss_pred eEEEEEecccccCCCCCceeCCCC-CCCCCHHHHHHHHHHHHH-CCCCEEEEEE-eeCCCcccccHHHHHHHHHHHHhhC
Confidence 445555679999999999876543 456899999999998765 4789999999 86 3333457888888888641
Q ss_pred CCCCCCeEEEEeCC---chhhHHHHhhhCCCceEEEEecCCCHHHHhhhcCCCCCCCHHHHHHHHHHHHHhcCCcEEEEE
Q 017203 193 FQVSPKRITVSTVG---IVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEY 269 (375)
Q Consensus 193 ~~i~~~~itisTnG---~~~~i~~l~~~~~~v~laiSL~a~~~~~r~~i~p~~~~~~~~~vl~~l~~~~~~~g~~v~i~~ 269 (375)
+..+|.+.|.- ..+.+.++.+.++ .+.-..+-+.++.+..+. ++++.++.++.++ .+++.-..+.+..
T Consensus 130 ---p~irI~~l~~~~~~~~e~L~~l~~ag~--~i~~~~~ets~~vlk~m~---r~~t~e~~le~i~-~ar~~~pgi~~~t 200 (289)
T PRK05481 130 ---PGTTIEVLIPDFRGRMDALLTVLDARP--DVFNHNLETVPRLYKRVR---PGADYERSLELLK-RAKELHPGIPTKS 200 (289)
T ss_pred ---CCcEEEEEccCCCCCHHHHHHHHhcCc--ceeeccccChHHHHHHhC---CCCCHHHHHHHHH-HHHHhCCCCeEee
Confidence 11346655532 1234566666553 332223344577777764 4678999999995 4455522344445
Q ss_pred EeeCCCCCCHHHHHHHHHHHhcCCCE-EEEeecCCCCCCCCCC---CCcHHHHHHHHHHHHhcCCce
Q 017203 270 IMLDGVNDEEQHAHQLGKLLETFQVV-VNLIPFNPIGSVSQFR---TSSDDKVSSFQKILRGSYNIR 332 (375)
Q Consensus 270 vli~gvND~~e~~~~L~~~l~~~~~~-vnLip~np~~~~~~~~---~~s~e~i~~f~~~l~~~~Gi~ 332 (375)
.+|=|+.++++|..+..++++++++. +++.+|-|-. ...++ ....++.+++.++.. +.|+.
T Consensus 201 ~~IvGfGET~ed~~~tl~~lrel~~d~v~if~Ys~pa-~k~~~v~~~~k~~r~~~l~~~~~-~i~~~ 265 (289)
T PRK05481 201 GLMVGLGETDEEVLEVMDDLRAAGVDILTIGQYLQPS-RKHLPVERYVTPEEFDEYKEIAL-ELGFL 265 (289)
T ss_pred eeEEECCCCHHHHHHHHHHHHhcCCCEEEEEccCCCc-cccCCCCCcCCHHHHHHHHHHHH-HcCch
Confidence 55557899999999999999999874 8888888731 11222 234567777777777 67874
No 76
>PRK15108 biotin synthase; Provisional
Probab=99.29 E-value=1e-09 Score=107.98 Aligned_cols=187 Identities=11% Similarity=0.151 Sum_probs=131.5
Q ss_pred cCCCCCcCccccCCCC---Cc--ccCCCHHHHHHHHHHhhhhCCcceEEEEeCC-Cc-ccCHHHHHHHHHHhhCCCCCCC
Q 017203 124 QVGCKMGCNFCATGTM---GF--KSNLSSGEIVEQLVHASRLSNIRNVVFMGMG-EP-LNNYAALVEAVRIMTGLPFQVS 196 (375)
Q Consensus 124 q~GCnl~C~fC~~~~~---~~--~r~lt~~ei~~qi~~~~~~~~i~~Ivf~GmG-EP-lln~~~l~~~i~~l~~~g~~i~ 196 (375)
+.+|+.+|.||+.+.. +. ...++++||++.+..+.. .+++.|++.+-| +| ...++.+.++++.+++.+
T Consensus 50 Tn~C~~~C~yC~~~~~~~~~~~~~~~ls~eEI~~~a~~~~~-~G~~~i~i~~~g~~p~~~~~e~i~~~i~~ik~~~---- 124 (345)
T PRK15108 50 TGACPEDCKYCPQSSRYKTGLEAERLMEVEQVLESARKAKA-AGSTRFCMGAAWKNPHERDMPYLEQMVQGVKAMG---- 124 (345)
T ss_pred CCCcCCCCcCCCCcccCCCCCCcccCCCHHHHHHHHHHHHH-cCCCEEEEEecCCCCCcchHHHHHHHHHHHHhCC----
Confidence 4899999999988642 11 234899999999987664 467888775523 66 445788999999998655
Q ss_pred CCeEEEEeCCchh--hHHHHhhhCCCceEEEEecCCCHHHHhhhcCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEEeeCC
Q 017203 197 PKRITVSTVGIVH--AINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDG 274 (375)
Q Consensus 197 ~~~itisTnG~~~--~i~~l~~~~~~v~laiSL~a~~~~~r~~i~p~~~~~~~~~vl~~l~~~~~~~g~~v~i~~vli~g 274 (375)
..+. .|||... .+++|.+.+. ..+.++|++ +++.+.++.+ ..++++.++.++ .+++.|.++..- +|=|
T Consensus 125 -i~v~-~s~G~ls~e~l~~LkeAGl-d~~n~~leT-~p~~f~~I~~---~~~~~~rl~~i~-~a~~~G~~v~sg--~i~G 194 (345)
T PRK15108 125 -LETC-MTLGTLSESQAQRLANAGL-DYYNHNLDT-SPEFYGNIIT---TRTYQERLDTLE-KVRDAGIKVCSG--GIVG 194 (345)
T ss_pred -CEEE-EeCCcCCHHHHHHHHHcCC-CEEeecccc-ChHhcCCCCC---CCCHHHHHHHHH-HHHHcCCceeeE--EEEe
Confidence 3454 5699763 4677777763 568899999 7899988864 348999999995 456778755443 3346
Q ss_pred CCCCHHHHHHHHHHHhcCCC---EEEEeecCCCCCCCCCC---CCcHHHHHHHHHHHH
Q 017203 275 VNDEEQHAHQLGKLLETFQV---VVNLIPFNPIGSVSQFR---TSSDDKVSSFQKILR 326 (375)
Q Consensus 275 vND~~e~~~~L~~~l~~~~~---~vnLip~np~~~~~~~~---~~s~e~i~~f~~~l~ 326 (375)
..++.+|.-+++..++.+.. .|-+.+|+|. +++++. +.+..+..+.....+
T Consensus 195 lgEt~ed~v~~~~~l~~l~~~~~~ip~~~~~P~-~gTpl~~~~~~~~~e~lr~iAi~R 251 (345)
T PRK15108 195 LGETVKDRAGLLLQLANLPTPPESVPINMLVKV-KGTPLADNDDVDAFDFIRTIAVAR 251 (345)
T ss_pred CCCCHHHHHHHHHHHHhccCCCCEEEeCCccCC-CCCCCCCCCCCCHHHHHHHHHHHH
Confidence 78899999999999998843 2444456665 355442 335555555555544
No 77
>TIGR03699 mena_SCO4550 menaquinone biosynthesis protein, SCO4550 family. members of this protein family are involved in menaquinone biosynthesis by an alternate pathway via futalosine.
Probab=99.29 E-value=2.7e-10 Score=111.99 Aligned_cols=195 Identities=15% Similarity=0.185 Sum_probs=129.5
Q ss_pred cCCCCCcCccccCCCCC---cccCCCHHHHHHHHHHhhhhCCcceEEEEeCC-CcccCHHHHHHHHHHhhCCCCCCCCCe
Q 017203 124 QVGCKMGCNFCATGTMG---FKSNLSSGEIVEQLVHASRLSNIRNVVFMGMG-EPLNNYAALVEAVRIMTGLPFQVSPKR 199 (375)
Q Consensus 124 q~GCnl~C~fC~~~~~~---~~r~lt~~ei~~qi~~~~~~~~i~~Ivf~GmG-EPlln~~~l~~~i~~l~~~g~~i~~~~ 199 (375)
+.+|+.+|.||...... ....++++||++.+..+.. .+++.|.|+| | +|.+..+.+.++++.+++.+.++...-
T Consensus 48 s~~C~~~C~fC~~~~~~~~~~~~~ls~eei~~~~~~~~~-~G~~~i~l~g-G~~p~~~~~~~~~li~~Ik~~~~~i~~~~ 125 (340)
T TIGR03699 48 TNICVVGCKFCAFYRAPGHPEGYVLSVEEILQKIEELVA-YGGTQILLQG-GVNPDLGLDYYEDLFRAIKARFPHIHIHS 125 (340)
T ss_pred chhhccCCccCCcccCCCCccccCCCHHHHHHHHHHHHH-cCCcEEEEec-CCCCCCCHHHHHHHHHHHHHHCCCcCCCC
Confidence 48999999999653321 1235899999999987765 4688999998 6 787778888899999987642221000
Q ss_pred -------EEEEeCCch-h-hHHHHhhhCCCceEE-EEecCCCHHHHhhhcCCCCCCCHHHHHHHHHHHHHhcCCcEEEEE
Q 017203 200 -------ITVSTVGIV-H-AINKFHSDLPGLNLA-VSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEY 269 (375)
Q Consensus 200 -------itisTnG~~-~-~i~~l~~~~~~v~la-iSL~a~~~~~r~~i~p~~~~~~~~~vl~~l~~~~~~~g~~v~i~~ 269 (375)
....|||+. + .+++|.+.+. ..+. ......+++.+..+.|. +.+.++.++.+ +.+++.|.++...+
T Consensus 126 ~s~~ei~~~~~~~g~~~~e~l~~Lk~aG~-~~~~~~g~E~~~~~~~~~~~~~--~~s~~~~l~~i-~~a~~~Gi~v~~~~ 201 (340)
T TIGR03699 126 FSPVEIVYIAKKEGLSLREVLERLKEAGL-DSIPGGGAEILSDRVRKIISPK--KISSEEWLEVM-ETAHKLGLPTTATM 201 (340)
T ss_pred CCHHHHHHHhccCCCCHHHHHHHHHHcCC-CcCCCCcccccCHHHHHhhCCC--CCCHHHHHHHH-HHHHHcCCCcccee
Confidence 012367875 2 4567776653 2232 23455778899888653 45788999999 56678888876544
Q ss_pred EeeCCCCCCHHHHHHHHHHHhcCCCE----EEEeec--CCCC-CCCCCCCCcHHHHHHHHHHHH
Q 017203 270 IMLDGVNDEEQHAHQLGKLLETFQVV----VNLIPF--NPIG-SVSQFRTSSDDKVSSFQKILR 326 (375)
Q Consensus 270 vli~gvND~~e~~~~L~~~l~~~~~~----vnLip~--np~~-~~~~~~~~s~e~i~~f~~~l~ 326 (375)
++ |...+.++..+++.+++.++.. ..++|+ .|.+ +....++++.++..+.....+
T Consensus 202 ii--GlgEt~ed~~~~l~~l~~l~~~~~~~~~fIP~~f~p~~tpl~~~~~~~~~e~l~~iA~~R 263 (340)
T TIGR03699 202 MF--GHVETLEDRIEHLERIRELQDKTGGFTAFIPWTFQPGNTELGKKRPATSTEYLKVLAISR 263 (340)
T ss_pred Ee--eCCCCHHHHHHHHHHHHHhchhhCCeeEEEeecccCCCCcccCCCCCCHHHHHHHHHHHH
Confidence 33 4577889999999999988643 244564 3422 222234566666666666655
No 78
>PRK14334 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=99.28 E-value=7e-10 Score=112.72 Aligned_cols=183 Identities=14% Similarity=0.257 Sum_probs=125.9
Q ss_pred CceEEEEeecCCCCCcCccccCCCC-CcccCCCHHHHHHHHHHhhhhCCcceEEEEe-----C-CCcccCHHHHHHHHHH
Q 017203 115 PRSTLCISSQVGCKMGCNFCATGTM-GFKSNLSSGEIVEQLVHASRLSNIRNVVFMG-----M-GEPLNNYAALVEAVRI 187 (375)
Q Consensus 115 ~r~tl~vssq~GCnl~C~fC~~~~~-~~~r~lt~~ei~~qi~~~~~~~~i~~Ivf~G-----m-GEPlln~~~l~~~i~~ 187 (375)
.+..+++..|.|||.+|.||..+.. +..+..++++|++++..... .++..|+|.| + |++... ..+.++++.
T Consensus 136 ~~~~~~l~isrGC~~~CsfC~~p~~~g~~~sr~~e~Iv~Ei~~l~~-~G~keI~l~g~~~~~yG~d~~~~-~~~~~Ll~~ 213 (440)
T PRK14334 136 GKLSAHLTIMRGCNHHCTYCIVPTTRGPEVSRHPDLILRELELLKA-AGVQEVTLLGQNVNSYGVDQPGF-PSFAELLRL 213 (440)
T ss_pred CCeEEEEEeccCCCCCCcCCCcchhcCCCccCCHHHHHHHHHHHHH-CCCeEEEEEeccccccccCCCCc-CCHHHHHHH
Confidence 4678899989999999999988653 33456789999999988765 3567788765 1 343221 245566666
Q ss_pred hhCCCCCCCCCeEEEEe-CC--chhh-HHHHhhhC-CCceEEEEecCCCHHHHhhhcCCCCCCCHHHHHHHHHHHHHhcC
Q 017203 188 MTGLPFQVSPKRITVST-VG--IVHA-INKFHSDL-PGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQ 262 (375)
Q Consensus 188 l~~~g~~i~~~~itisT-nG--~~~~-i~~l~~~~-~~v~laiSL~a~~~~~r~~i~p~~~~~~~~~vl~~l~~~~~~~g 262 (375)
+.+.++ .++.+++ +. +.+. +..|++.. .-..+.|++.+.+++..+.+ ++.++.++++++++. +++.+
T Consensus 214 l~~~~i----~~ir~~~~~p~~i~~ell~~l~~~~~g~~~l~igvQSgs~~vLk~m---~R~~~~~~~~~~v~~-lr~~~ 285 (440)
T PRK14334 214 VGASGI----PRVKFTTSHPMNFTDDVIAAMAETPAVCEYIHLPVQSGSDRVLRRM---AREYRREKYLERIAE-IREAL 285 (440)
T ss_pred HHhcCC----cEEEEccCCcccCCHHHHHHHHhcCcCCCeEEeccccCCHHHHHHh---CCCCCHHHHHHHHHH-HHHhC
Confidence 654442 2455544 22 2333 34444422 12468899999999987665 667889999999954 56666
Q ss_pred CcEEEEEEeeCC-CCCCHHHHHHHHHHHhcCCC-EEEEeecCCCCCCC
Q 017203 263 QKIFIEYIMLDG-VNDEEQHAHQLGKLLETFQV-VVNLIPFNPIGSVS 308 (375)
Q Consensus 263 ~~v~i~~vli~g-vND~~e~~~~L~~~l~~~~~-~vnLip~np~~~~~ 308 (375)
..+.+.+-+|=| .+++.+++++.++|+..++. .+++.+|.|. +++
T Consensus 286 ~~i~i~~d~IvG~PgEt~ed~~~tl~~i~~l~~~~i~~f~ysp~-pGT 332 (440)
T PRK14334 286 PDVVLSTDIIVGFPGETEEDFQETLSLYDEVGYDSAYMFIYSPR-PGT 332 (440)
T ss_pred CCcEEEEeEEEECCCCCHHHHHHHHHHHHhcCCCEeeeeEeeCC-CCC
Confidence 666665544444 57899999999999999875 4778888887 444
No 79
>TIGR00423 radical SAM domain protein, CofH subfamily. This protein family includes the CofH protein of coenzyme F(420) biosynthesis from Methanocaldococcus jannaschii, but appears to hit genomes more broadly than just the subset that make coenzyme F(420), so that narrower group is being built as a separate family.
Probab=99.26 E-value=5.6e-10 Score=108.34 Aligned_cols=197 Identities=18% Similarity=0.185 Sum_probs=133.0
Q ss_pred EEEeecCCCCCcCccccCCCCC---cccCCCHHHHHHHHHHhhhhCCcceEEEEeCC-CcccCHHHHHHHHHHhhCCCCC
Q 017203 119 LCISSQVGCKMGCNFCATGTMG---FKSNLSSGEIVEQLVHASRLSNIRNVVFMGMG-EPLNNYAALVEAVRIMTGLPFQ 194 (375)
Q Consensus 119 l~vssq~GCnl~C~fC~~~~~~---~~r~lt~~ei~~qi~~~~~~~~i~~Ivf~GmG-EPlln~~~l~~~i~~l~~~g~~ 194 (375)
..|..+.||+.+|.||.-+... ....++.++|++.+..+.. .+++.|.|.| | .|..+.+.+.++++.+++.+.+
T Consensus 7 ~~i~~T~~C~~~C~FC~~~~~~~~~~~~~ls~eeI~~~~~~~~~-~G~~~i~l~g-g~~~~~~~~~~~~i~~~Ik~~~~~ 84 (309)
T TIGR00423 7 RNINFTNICVGKCKFCAFRAREKDKDAYVLSLEEILEKVKEAVA-KGATEVCIQG-GLNPQLDIEYYEELFRAIKQEFPD 84 (309)
T ss_pred eeecCccccccCCccCCCccCCCCCCcccCCHHHHHHHHHHHHH-CCCCEEEEec-CCCCCCCHHHHHHHHHHHHHHCCC
Confidence 3455569999999999875422 1246899999999987765 4688999998 7 5777888899999999976421
Q ss_pred CCCCeEEEE----------eCCch-h-hHHHHhhhCCCceEE-EEecCCCHHHHhhhcCCCCCCCHHHHHHHHHHHHHhc
Q 017203 195 VSPKRITVS----------TVGIV-H-AINKFHSDLPGLNLA-VSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNS 261 (375)
Q Consensus 195 i~~~~itis----------TnG~~-~-~i~~l~~~~~~v~la-iSL~a~~~~~r~~i~p~~~~~~~~~vl~~l~~~~~~~ 261 (375)
.++... +.|.. + .+++|.+.+. ..+. ++.+..+++.++.+.|. +.+.++.++++ +.+++.
T Consensus 85 ---i~~~~~s~~e~~~~~~~~g~~~~e~l~~LkeAGl-~~i~~~g~E~l~~~~~~~i~~~--~~t~~~~l~~i-~~a~~~ 157 (309)
T TIGR00423 85 ---VHIHAFSPMEVYFLAKNEGLSIEEVLKRLKKAGL-DSMPGTGAEILDDSVRRKICPN--KLSSDEWLEVI-KTAHRL 157 (309)
T ss_pred ---ceEEecCHHHHHHHHHHcCCCHHHHHHHHHHcCC-CcCCCCcchhcCHHHHHhhCCC--CCCHHHHHHHH-HHHHHc
Confidence 223211 35544 2 4677777653 2343 56777889999999763 45778888998 456788
Q ss_pred CCcEEEEEEeeCCCCCCHHHHHHHHHHHhcCCCE----EEEee--cCCCC-C-CC--CCCCCcHHHHHHHHHHHH
Q 017203 262 QQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVV----VNLIP--FNPIG-S-VS--QFRTSSDDKVSSFQKILR 326 (375)
Q Consensus 262 g~~v~i~~vli~gvND~~e~~~~L~~~l~~~~~~----vnLip--~np~~-~-~~--~~~~~s~e~i~~f~~~l~ 326 (375)
|.++..- .+ =|...+.++..+++.++++++.. -.++| |.|.+ + .. ..++++..+..+....++
T Consensus 158 Gi~~~s~-~i-iG~~Et~ed~~~~l~~lr~l~~~~~~f~~fiP~~f~~~~t~~l~~~~~~~~~~~e~lr~iA~~R 230 (309)
T TIGR00423 158 GIPTTAT-MM-FGHVENPEHRVEHLLRIRKIQEKTGGFTEFIPLPFQPENNPYLEGEVRKGASGIDDLKVIAISR 230 (309)
T ss_pred CCCceee-EE-ecCCCCHHHHHHHHHHHHhhchhhCCeeeEEeeeecCCCChhhccCCCCCCCHHHHHHHHHHHH
Confidence 8877643 33 35667899999999999988643 12344 43432 1 11 124566666666665554
No 80
>PRK14332 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=99.26 E-value=7.5e-10 Score=112.64 Aligned_cols=181 Identities=16% Similarity=0.276 Sum_probs=126.8
Q ss_pred eEEEEeecCCCCCcCccccCCCC-CcccCCCHHHHHHHHHHhhhhCCcceEEEEeCCCcccCH---HHHHHHHHHhhCC-
Q 017203 117 STLCISSQVGCKMGCNFCATGTM-GFKSNLSSGEIVEQLVHASRLSNIRNVVFMGMGEPLNNY---AALVEAVRIMTGL- 191 (375)
Q Consensus 117 ~tl~vssq~GCnl~C~fC~~~~~-~~~r~lt~~ei~~qi~~~~~~~~i~~Ivf~GmGEPlln~---~~l~~~i~~l~~~- 191 (375)
...++..+.|||.+|.||..+.. |..+..++++|++++..... .++..|+|.| ..-+.+. ..+.++++.+.+.
T Consensus 154 ~~a~l~isrGC~~~CsFC~ip~~rG~~rsr~~e~Iv~Ei~~l~~-~G~kei~l~~-~~~~~y~~~~~~l~~Ll~~l~~~~ 231 (449)
T PRK14332 154 IQAFVTIMRGCNNFCTFCVVPYTRGRERSRDPKSIVREIQDLQE-KGIRQVTLLG-QNVNSYKEQSTDFAGLIQMLLDET 231 (449)
T ss_pred ceEEEEecCCcCCCCCCCCcccccCCcccCCHHHHHHHHHHHHH-CCCeEEEEec-ccCCcccCCcccHHHHHHHHhcCC
Confidence 45677778999999999988643 34578899999999988765 4688999998 5555432 2366677766544
Q ss_pred CCCCCCCeEEEEe---CCchhhHHHHhhhCCC--ceEEEEecCCCHHHHhhhcCCCCCCCHHHHHHHHHHHHHhcCCcEE
Q 017203 192 PFQVSPKRITVST---VGIVHAINKFHSDLPG--LNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIF 266 (375)
Q Consensus 192 g~~i~~~~itisT---nG~~~~i~~l~~~~~~--v~laiSL~a~~~~~r~~i~p~~~~~~~~~vl~~l~~~~~~~g~~v~ 266 (375)
+. .++.+++ ..+.+.+.++....+. ..+.+.+.+.+++..+.+ +++++.++..++++. +++....+.
T Consensus 232 ~~----~~ir~~~~~p~~~~~ell~~m~~~~~~~~~l~lgvQSgsd~vLk~m---~R~~t~~~~~~~i~~-lr~~~p~i~ 303 (449)
T PRK14332 232 TI----ERIRFTSPHPKDFPDHLLSLMAKNPRFCPNIHLPLQAGNTRVLEEM---KRSYSKEEFLDVVKE-IRNIVPDVG 303 (449)
T ss_pred Cc----ceEEEECCCcccCCHHHHHHHHhCCCccceEEECCCcCCHHHHHhh---CCCCCHHHHHHHHHH-HHHhCCCCE
Confidence 31 3566655 2233333333333332 358889999999987776 567899999999954 445444455
Q ss_pred EEEEeeCC-CCCCHHHHHHHHHHHhcCCC-EEEEeecCCCCCCC
Q 017203 267 IEYIMLDG-VNDEEQHAHQLGKLLETFQV-VVNLIPFNPIGSVS 308 (375)
Q Consensus 267 i~~vli~g-vND~~e~~~~L~~~l~~~~~-~vnLip~np~~~~~ 308 (375)
+.+-+|-| .++++++++++.+|++.++. .+++.+|.|. +++
T Consensus 304 i~td~IvGfPgET~edf~~tl~~v~~l~~~~~~~f~ys~~-~GT 346 (449)
T PRK14332 304 ITTDIIVGFPNETEEEFEDTLAVVREVQFDMAFMFKYSER-EGT 346 (449)
T ss_pred EEEEEEeeCCCCCHHHHHHHHHHHHhCCCCEEEEEEecCC-CCC
Confidence 55545544 47899999999999999986 4788889887 444
No 81
>TIGR01579 MiaB-like-C MiaB-like tRNA modifying enzyme. This clade is a member of a subfamily (TIGR00089) and spans low GC Gram positive bacteria, alpha and epsilon proteobacteria, Campylobacter, Porphyromonas, Aquifex, Thermotoga, Chlamydia, Treponema and Fusobacterium.
Probab=99.25 E-value=9.3e-10 Score=111.02 Aligned_cols=181 Identities=14% Similarity=0.273 Sum_probs=123.9
Q ss_pred eEEEEeecCCCCCcCccccCCCC-CcccCCCHHHHHHHHHHhhhhCCcceEEEEeCCCcccC------HHHHHHHHHHhh
Q 017203 117 STLCISSQVGCKMGCNFCATGTM-GFKSNLSSGEIVEQLVHASRLSNIRNVVFMGMGEPLNN------YAALVEAVRIMT 189 (375)
Q Consensus 117 ~tl~vssq~GCnl~C~fC~~~~~-~~~r~lt~~ei~~qi~~~~~~~~i~~Ivf~GmGEPlln------~~~l~~~i~~l~ 189 (375)
...++.++.|||++|.||..+.. +..+..++++|++++..... .++..|+|.| .+.... ...+.++++.+.
T Consensus 138 ~~~~i~isrGCp~~CsfC~~~~~~g~~r~r~~e~I~~Ei~~l~~-~g~~ei~l~~-~~~~~y~~d~~~~~~l~~Ll~~l~ 215 (414)
T TIGR01579 138 TRAFIKVQDGCNFFCSYCIIPFARGRSRSVPMEAILKQVKILVA-KGYKEIVLTG-VNLGSYGDDLKNGTSLAKLLEQIL 215 (414)
T ss_pred eEEEEEeccCcCCCCCCCceeeecCCCccCCHHHHHHHHHHHHH-CCCceEEEee-EccchhccCCCCCCcHHHHHHHHh
Confidence 44566777999999999987642 34578899999999988765 3688999987 443322 135778888877
Q ss_pred CC-CCCCCCCeEEEEeCC---chhh-HHHHhhhC-CCceEEEEecCCCHHHHhhhcCCCCCCCHHHHHHHHHHHHHh--c
Q 017203 190 GL-PFQVSPKRITVSTVG---IVHA-INKFHSDL-PGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKN--S 261 (375)
Q Consensus 190 ~~-g~~i~~~~itisTnG---~~~~-i~~l~~~~-~~v~laiSL~a~~~~~r~~i~p~~~~~~~~~vl~~l~~~~~~--~ 261 (375)
+. ++ .++.+++.- +.+. ++.+++.. ....+.+.+.+.+++..+.+ +++++.+++.++++. +++ .
T Consensus 216 ~~~~~----~~ir~~~~~p~~~~~ell~~m~~~~~~~~~l~lglESgs~~vLk~m---~R~~~~~~~~~~v~~-l~~~~~ 287 (414)
T TIGR01579 216 QIPGI----KRIRLSSIDPEDIDEELLEAIASEKRLCPHLHLSLQSGSDRVLKRM---RRKYTRDDFLKLVNK-LRSVRP 287 (414)
T ss_pred cCCCC----cEEEEeCCChhhCCHHHHHHHHhcCccCCCeEECCCcCChHHHHhc---CCCCCHHHHHHHHHH-HHHhCC
Confidence 54 32 345554321 2222 33333332 12368889999999988775 667889999999954 455 4
Q ss_pred CCcEEEEEEeeCCCCCCHHHHHHHHHHHhcCCC-EEEEeecCCCCCCCC
Q 017203 262 QQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQV-VVNLIPFNPIGSVSQ 309 (375)
Q Consensus 262 g~~v~i~~vli~gvND~~e~~~~L~~~l~~~~~-~vnLip~np~~~~~~ 309 (375)
|..+... +++.-.+++++++++..+|+..++. .+++.+|.|. ++++
T Consensus 288 gi~i~~~-~IvG~PgET~ed~~~tl~~i~~~~~~~~~~~~~sp~-pGT~ 334 (414)
T TIGR01579 288 DYAFGTD-IIVGFPGESEEDFQETLRMVKEIEFSHLHIFPYSAR-PGTP 334 (414)
T ss_pred CCeeeee-EEEECCCCCHHHHHHHHHHHHhCCCCEEEeeecCCC-CCCc
Confidence 5544332 2333347899999999999999975 4788888887 4543
No 82
>PRK12928 lipoyl synthase; Provisional
Probab=99.24 E-value=9.8e-10 Score=105.52 Aligned_cols=203 Identities=15% Similarity=0.179 Sum_probs=140.3
Q ss_pred eEEEEeecCCCCCcCccccCCCCCcccCCCHHHHHHHHHHhhhhCCcceEEEEeCCC----cccCHHHHHHHHHHhhCCC
Q 017203 117 STLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSNIRNVVFMGMGE----PLNNYAALVEAVRIMTGLP 192 (375)
Q Consensus 117 ~tl~vssq~GCnl~C~fC~~~~~~~~r~lt~~ei~~qi~~~~~~~~i~~Ivf~GmGE----Plln~~~l~~~i~~l~~~g 192 (375)
..-++..+.||+.+|.||.-.. +....++++|+++.+..+.. .+++.|+++| |. |-...+.+.++++.+++..
T Consensus 60 ~~tfv~is~gC~~~C~FCa~~~-g~~~~~~~eei~~~a~~~~~-~G~keivitg-~~~dDl~d~g~~~~~ell~~Ik~~~ 136 (290)
T PRK12928 60 TATFLIMGSICTRRCAFCQVDK-GRPMPLDPDEPERVAEAVAA-LGLRYVVLTS-VARDDLPDGGAAHFVATIAAIRARN 136 (290)
T ss_pred EEEEEEecccccCcCCCCCccC-CCCCCCCHHHHHHHHHHHHH-CCCCEEEEEE-EeCCcccccCHHHHHHHHHHHHhcC
Confidence 4445555799999999998876 44556899999998887665 4688999999 54 3344467888888888752
Q ss_pred CCCCCCeEEEEeCCc----hhhHHHHhhhCCCceEEEEecCCCHHHHhhhcCCCCCCCHHHHHHHHHHHHHhcCCcEEEE
Q 017203 193 FQVSPKRITVSTVGI----VHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIE 268 (375)
Q Consensus 193 ~~i~~~~itisTnG~----~~~i~~l~~~~~~v~laiSL~a~~~~~r~~i~p~~~~~~~~~vl~~l~~~~~~~g~~v~i~ 268 (375)
+..+|.+-|-.. ...+.++.+.++.+ +..-+.+ .++.+..+- +.++.++.++.++ .+++.+..+.+.
T Consensus 137 ---p~~~I~~ltp~~~~~~~e~L~~l~~Ag~~i-~~hnlEt-~~~vl~~m~---r~~t~e~~le~l~-~ak~~gp~i~~~ 207 (290)
T PRK12928 137 ---PGTGIEVLTPDFWGGQRERLATVLAAKPDV-FNHNLET-VPRLQKAVR---RGADYQRSLDLLA-RAKELAPDIPTK 207 (290)
T ss_pred ---CCCEEEEeccccccCCHHHHHHHHHcCchh-hcccCcC-cHHHHHHhC---CCCCHHHHHHHHH-HHHHhCCCceec
Confidence 124566555433 23466677665322 2222343 477777764 4578999999994 566777556666
Q ss_pred EEeeCCCCCCHHHHHHHHHHHhcCCCE-EEEeecC-CCCCCCC-CCCCcHHHHHHHHHHHHhcCCce
Q 017203 269 YIMLDGVNDEEQHAHQLGKLLETFQVV-VNLIPFN-PIGSVSQ-FRTSSDDKVSSFQKILRGSYNIR 332 (375)
Q Consensus 269 ~vli~gvND~~e~~~~L~~~l~~~~~~-vnLip~n-p~~~~~~-~~~~s~e~i~~f~~~l~~~~Gi~ 332 (375)
..+|=|+.++.+++.+..++++++++. +++-+|- |.....+ .+..++++.+.++++.. +.|+.
T Consensus 208 s~iIvG~GET~ed~~etl~~Lrel~~d~v~i~~Yl~p~~~~~~v~~~~~~~~f~~~~~~~~-~~g~~ 273 (290)
T PRK12928 208 SGLMLGLGETEDEVIETLRDLRAVGCDRLTIGQYLRPSLAHLPVQRYWTPEEFEALGQIAR-ELGFS 273 (290)
T ss_pred ccEEEeCCCCHHHHHHHHHHHHhcCCCEEEEEcCCCCCccCCceeeccCHHHHHHHHHHHH-HcCCc
Confidence 666668899999999999999999975 7887884 4321111 12345688888888888 68874
No 83
>PLN02389 biotin synthase
Probab=99.23 E-value=2.5e-09 Score=106.33 Aligned_cols=186 Identities=13% Similarity=0.233 Sum_probs=132.5
Q ss_pred cCCCCCcCccccCCCC---Cc--ccCCCHHHHHHHHHHhhhhCCcceEEEE-----eCCCcccCHHHHHHHHHHhhCCCC
Q 017203 124 QVGCKMGCNFCATGTM---GF--KSNLSSGEIVEQLVHASRLSNIRNVVFM-----GMGEPLNNYAALVEAVRIMTGLPF 193 (375)
Q Consensus 124 q~GCnl~C~fC~~~~~---~~--~r~lt~~ei~~qi~~~~~~~~i~~Ivf~-----GmGEPlln~~~l~~~i~~l~~~g~ 193 (375)
+.+|+.+|.||+.... +. ...++++||++.+..... .++..|.+. +.|||.. ++.+.++++.+++.+
T Consensus 90 T~~C~~~C~fCaqs~~~~~~~~~~~~Ls~EeIl~~a~~~~~-~G~~~~~ivts~rg~~~e~~~-~e~i~eiir~ik~~~- 166 (379)
T PLN02389 90 TGGCSEDCSYCPQSSRYDTGVKAQKLMSKDDVLEAAKRAKE-AGSTRFCMGAAWRDTVGRKTN-FNQILEYVKEIRGMG- 166 (379)
T ss_pred cCCcCcCCCCCCCcccCCCCCcccccCCHHHHHHHHHHHHH-cCCCEEEEEecccCCCCChhH-HHHHHHHHHHHhcCC-
Confidence 4899999999987532 11 245899999999987765 356666653 2266664 689999999998655
Q ss_pred CCCCCeEEEEeCCchh--hHHHHhhhCCCceEEEEecCCCHHHHhhhcCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEEe
Q 017203 194 QVSPKRITVSTVGIVH--AINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIM 271 (375)
Q Consensus 194 ~i~~~~itisTnG~~~--~i~~l~~~~~~v~laiSL~a~~~~~r~~i~p~~~~~~~~~vl~~l~~~~~~~g~~v~i~~vl 271 (375)
..++ .|+|+.. .+++|.+.+. ..+.++|++ .++.++++.+ ..++++.++.++ .+++.|.++.. -+
T Consensus 167 ----l~i~-~s~G~l~~E~l~~LkeAGl-d~~~~~LeT-s~~~y~~i~~---~~s~e~rl~ti~-~a~~~Gi~v~s--g~ 233 (379)
T PLN02389 167 ----MEVC-CTLGMLEKEQAAQLKEAGL-TAYNHNLDT-SREYYPNVIT---TRSYDDRLETLE-AVREAGISVCS--GG 233 (379)
T ss_pred ----cEEE-ECCCCCCHHHHHHHHHcCC-CEEEeeecC-ChHHhCCcCC---CCCHHHHHHHHH-HHHHcCCeEeE--EE
Confidence 2344 5789753 4678887763 468888998 4678888764 348999999995 55778876544 35
Q ss_pred eCCCCCCHHHHHHHHHHHhcCCC---EEEEeecCCCCCCCC---CCCCcHHHHHHHHHHHH
Q 017203 272 LDGVNDEEQHAHQLGKLLETFQV---VVNLIPFNPIGSVSQ---FRTSSDDKVSSFQKILR 326 (375)
Q Consensus 272 i~gvND~~e~~~~L~~~l~~~~~---~vnLip~np~~~~~~---~~~~s~e~i~~f~~~l~ 326 (375)
|-|.+++.+|..+++.+++.+.. .|.+.+|+|. ++++ .++++.++..+.....+
T Consensus 234 IiGlgEt~edrv~~l~~Lr~L~~~~~~v~l~~l~P~-~GTpL~~~~~~s~~e~lr~iAi~R 293 (379)
T PLN02389 234 IIGLGEAEEDRVGLLHTLATLPEHPESVPINALVAV-KGTPLEDQKPVEIWEMVRMIATAR 293 (379)
T ss_pred EECCCCCHHHHHHHHHHHHhcccCCcEEecccceec-CCCcCCCCCCCCHHHHHHHHHHHH
Confidence 56889999999999999998843 3556667776 4554 34566766666655554
No 84
>COG2108 Uncharacterized conserved protein related to pyruvate formate-lyase activating enzyme [General function prediction only]
Probab=99.22 E-value=4.5e-10 Score=106.40 Aligned_cols=211 Identities=18% Similarity=0.205 Sum_probs=136.7
Q ss_pred CceEEEEeecCCCCCcCccccCCCCCcc--------c-CCCHHHHHHHHHHhhhhCCcceEEEEeCCCcccCHHHHHHHH
Q 017203 115 PRSTLCISSQVGCKMGCNFCATGTMGFK--------S-NLSSGEIVEQLVHASRLSNIRNVVFMGMGEPLNNYAALVEAV 185 (375)
Q Consensus 115 ~r~tl~vssq~GCnl~C~fC~~~~~~~~--------r-~lt~~ei~~qi~~~~~~~~i~~Ivf~GmGEPlln~~~l~~~i 185 (375)
...++||+ .-||.+|.||..+..... + --+.++|+..+.... ..++.++| |||++-.+.+.+.+
T Consensus 28 ~KlVlFvT--G~C~~~CfYCPvs~~r~gkdviyaNErpV~~~eDii~ea~~~~----a~GasiTG-GdPl~~ieR~~~~i 100 (353)
T COG2108 28 GKLVLFVT--GLCNRSCFYCPVSDERKGKDVIYANERPVKSVEDIIEEAKLMD----ALGASITG-GDPLLEIERTVEYI 100 (353)
T ss_pred CceEEEEe--cccCCCcccCcCCHHhcCCcceeecccccCcHHHHHHHHHHhc----cccccccC-CChHHHHHHHHHHH
Confidence 46788885 679999999998643221 1 134566666655433 37899999 99999999999999
Q ss_pred HHhhCC-CCCCCCCeEEEEeCCchh---hHHHHhhhCCCceEEEEecCCCHHHHhhhcCCCCCCCHHHHHHHHHHHHHhc
Q 017203 186 RIMTGL-PFQVSPKRITVSTVGIVH---AINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNS 261 (375)
Q Consensus 186 ~~l~~~-g~~i~~~~itisTnG~~~---~i~~l~~~~~~v~laiSL~a~~~~~r~~i~p~~~~~~~~~vl~~l~~~~~~~ 261 (375)
+.+++. | ...|+.+.|+|..+ .+++|.+.++ +.+.+....+. ....++.++++ ..++++
T Consensus 101 r~LK~efG---~~fHiHLYT~g~~~~~e~l~~L~eAGL-DEIRfHp~~~~------------~~~~e~~i~~l-~~A~~~ 163 (353)
T COG2108 101 RLLKDEFG---EDFHIHLYTTGILATEEALKALAEAGL-DEIRFHPPRPG------------SKSSEKYIENL-KIAKKY 163 (353)
T ss_pred HHHHHhhc---cceeEEEeeccccCCHHHHHHHHhCCC-CeEEecCCCcc------------ccccHHHHHHH-HHHHHh
Confidence 999987 6 23789999999874 4677777653 44555332111 11346677777 455688
Q ss_pred CCcEEEEEEeeCCCCCCHHHHHHHHHHHhcCCCE-EEEe--ecCCCC----CCCCC---------CCCcHHHHHHHHHHH
Q 017203 262 QQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVV-VNLI--PFNPIG----SVSQF---------RTSSDDKVSSFQKIL 325 (375)
Q Consensus 262 g~~v~i~~vli~gvND~~e~~~~L~~~l~~~~~~-vnLi--p~np~~----~~~~~---------~~~s~e~i~~f~~~l 325 (375)
|..+-++++.+|| -++.+.++++++.+.+.+ +|+. -|+... ....| ..-|.+...+..+..
T Consensus 164 g~dvG~EiPaipg---~e~~i~e~~~~~~~~~~~FlNiNELE~sE~N~~~l~~~gy~~~~~~~~av~GS~E~~Lk~l~~~ 240 (353)
T COG2108 164 GMDVGVEIPAIPG---EEEAILEFAKALDENGLDFLNINELEFSENNYENLLERGYKISDDGSSAVAGSLEAALKVLKWA 240 (353)
T ss_pred CccceeecCCCcc---hHHHHHHHHHHHHhcccceeeeeeeeeccchHHHHHhcCceeccCCcccccchHHHHHHHHHHH
Confidence 9999999999998 456788899999888743 4443 344321 01111 122455666666666
Q ss_pred HhcCCceEEeccCCCcchhcccchhhccccC
Q 017203 326 RGSYNIRTTVRKQMGQDISGACGQLVVNLPD 356 (375)
Q Consensus 326 ~~~~Gi~v~vR~~~g~di~aaCGql~~~~~~ 356 (375)
....++.|..=.+.=.|. -|++.+..+
T Consensus 241 ~~~~~l~vH~Css~~KDa----vQ~r~Rl~r 267 (353)
T COG2108 241 EENWDLTVHYCSSKFKDA----VQLRNRLKR 267 (353)
T ss_pred hcccCceEEECchhhhHH----HHHHHHHHH
Confidence 534455555444333332 377766544
No 85
>PRK05799 coproporphyrinogen III oxidase; Provisional
Probab=99.21 E-value=3.1e-09 Score=105.82 Aligned_cols=202 Identities=13% Similarity=0.171 Sum_probs=130.0
Q ss_pred eEEEEeecCCCCCcCccccCCCCCcccCC---CHHHHHHHHHHhhhhCCcceEEEEeCCCccc-CHHHHHHHHHHhhCCC
Q 017203 117 STLCISSQVGCKMGCNFCATGTMGFKSNL---SSGEIVEQLVHASRLSNIRNVVFMGMGEPLN-NYAALVEAVRIMTGLP 192 (375)
Q Consensus 117 ~tl~vssq~GCnl~C~fC~~~~~~~~r~l---t~~ei~~qi~~~~~~~~i~~Ivf~GmGEPll-n~~~l~~~i~~l~~~g 192 (375)
+.+.| .=|+.+|.||........... ..+.+++++........+..|.|.| |+|++ +.+.+..+++.++..+
T Consensus 6 lYiHi---PfC~~~C~yC~~~~~~~~~~~~~~y~~~l~~Ei~~~~~~~~~~~i~~gG-Gtps~l~~~~l~~L~~~i~~~~ 81 (374)
T PRK05799 6 LYIHI---PFCKQKCLYCDFPSYSGKEDLMMEYIKALSKEIRNSTKNKKIKSIFIGG-GTPTYLSLEALEILKETIKKLN 81 (374)
T ss_pred EEEEe---CCccCCCCCCCCCcccCCcchHHHHHHHHHHHHHhhcCCCceeEEEECC-CcccCCCHHHHHHHHHHHHhCC
Confidence 44445 669999999987543211111 2455666664332223467888888 99995 6666666777775433
Q ss_pred CCCCCCeEEEEeCCc--hh-hHHHHhhhCCCceEEEEecCCCHHHHhhhcCCCCCCCHHHHHHHHHHHHHhcCCc-EEEE
Q 017203 193 FQVSPKRITVSTVGI--VH-AINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQK-IFIE 268 (375)
Q Consensus 193 ~~i~~~~itisTnG~--~~-~i~~l~~~~~~v~laiSL~a~~~~~r~~i~p~~~~~~~~~vl~~l~~~~~~~g~~-v~i~ 268 (375)
+. ....+++.||.. .+ .++.|.+.+ ...+.|++.+.+++.++.+ ++..+.++++++++ .+++.|.. +.+-
T Consensus 82 ~~-~~~eitie~~p~~~t~e~l~~l~~~G-~~rvsiGvqS~~d~~L~~l---~R~~~~~~~~~ai~-~l~~~g~~~v~~d 155 (374)
T PRK05799 82 KK-EDLEFTVEGNPGTFTEEKLKILKSMG-VNRLSIGLQAWQNSLLKYL---GRIHTFEEFLENYK-LARKLGFNNINVD 155 (374)
T ss_pred CC-CCCEEEEEeCCCcCCHHHHHHHHHcC-CCEEEEECccCCHHHHHHc---CCCCCHHHHHHHHH-HHHHcCCCcEEEE
Confidence 21 125789999873 23 355566554 3478899999999988877 45678999999994 56677764 4443
Q ss_pred EEeeCC-CCCCHHHHHHHHHHHhcCCC-EEEEeecCCCCCCC---------CCCCCcHHHHHHH----HHHHHhcCCce
Q 017203 269 YIMLDG-VNDEEQHAHQLGKLLETFQV-VVNLIPFNPIGSVS---------QFRTSSDDKVSSF----QKILRGSYNIR 332 (375)
Q Consensus 269 ~vli~g-vND~~e~~~~L~~~l~~~~~-~vnLip~np~~~~~---------~~~~~s~e~i~~f----~~~l~~~~Gi~ 332 (375)
+|=| .+++.+++.+.++++..+++ ++.+-++.|. +++ .+..|+.++..++ .+.|. +.|+.
T Consensus 156 --li~GlPgqt~e~~~~~l~~~~~l~~~~is~y~l~~~-pgT~l~~~~~~g~~~~~~~~~~~~~~~~~~~~l~-~~Gy~ 230 (374)
T PRK05799 156 --LMFGLPNQTLEDWKETLEKVVELNPEHISCYSLIIE-EGTPFYNLYENGKLKLPDEEEEREMYHYTIEFLK-EKGYH 230 (374)
T ss_pred --eecCCCCCCHHHHHHHHHHHHhcCCCEEEEeccEec-CCCHHHHHHhcCCCCCCChHHHHHHHHHHHHHHH-HcCCc
Confidence 3333 36789999999999999875 4666666554 232 2445665554433 34555 46653
No 86
>PRK14325 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=99.21 E-value=2.1e-09 Score=109.38 Aligned_cols=183 Identities=13% Similarity=0.233 Sum_probs=121.9
Q ss_pred ceEEEEeecCCCCCcCccccCCCC-CcccCCCHHHHHHHHHHhhhhCCcceEEEEeCCCccc--------CHHHHHHHHH
Q 017203 116 RSTLCISSQVGCKMGCNFCATGTM-GFKSNLSSGEIVEQLVHASRLSNIRNVVFMGMGEPLN--------NYAALVEAVR 186 (375)
Q Consensus 116 r~tl~vssq~GCnl~C~fC~~~~~-~~~r~lt~~ei~~qi~~~~~~~~i~~Ivf~GmGEPll--------n~~~l~~~i~ 186 (375)
+...++.+|.|||++|.||..+.. |..+..++++|++++..... .++..|+|.| -.-.. +...+.++++
T Consensus 146 ~~~~~i~isrGCp~~CsFC~~p~~~G~~~sr~~e~Iv~Ei~~l~~-~g~~ei~l~d-~~~~~y~~~~~~~~~~~l~~Ll~ 223 (444)
T PRK14325 146 GPSAFVSIMEGCDKYCTFCVVPYTRGEEVSRPVDDVLAEVAQLAE-QGVREITLLG-QNVNAYRGEGPDGEIADFAELLR 223 (444)
T ss_pred CceEEEEhhhCCCCCCCccccCcccCCcccCCHHHHHHHHHHHHH-CCCcEEEEEe-eccccccCCCCCCCcchHHHHHH
Confidence 456777778999999999988643 33456899999999988665 3678888887 32222 1125777787
Q ss_pred HhhCC-CCCCCCCeEEEEe---CCchhh-HHHHhhhC-CCceEEEEecCCCHHHHhhhcCCCCCCCHHHHHHHHHHHHHh
Q 017203 187 IMTGL-PFQVSPKRITVST---VGIVHA-INKFHSDL-PGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKN 260 (375)
Q Consensus 187 ~l~~~-g~~i~~~~itisT---nG~~~~-i~~l~~~~-~~v~laiSL~a~~~~~r~~i~p~~~~~~~~~vl~~l~~~~~~ 260 (375)
.+.+. |+ .++.+++ ..+.+. +..+++.. .-..+.+.+.+.+++..+.+ ++.++.+++.++++. +++
T Consensus 224 ~l~~~~~~----~~ir~~~~~p~~~~~ell~~l~~~~~~~~~l~igiqSgs~~vLk~m---~R~~~~~~~~~~i~~-lr~ 295 (444)
T PRK14325 224 LVAAIDGI----ERIRYTTSHPRDFTDDLIEAYADLPKLVPFLHLPVQSGSDRILKAM---NRGHTALEYKSIIRK-LRA 295 (444)
T ss_pred HHHhcCCc----cEEEEccCCcccCCHHHHHHHHcCCcccCceeccCCcCCHHHHHhC---CCCCCHHHHHHHHHH-HHH
Confidence 77664 42 2455544 222333 33444432 12367889999999887665 567899999999954 455
Q ss_pred cCCcEEEEEE-eeCCCCCCHHHHHHHHHHHhcCCC-EEEEeecCCCCCCCC
Q 017203 261 SQQKIFIEYI-MLDGVNDEEQHAHQLGKLLETFQV-VVNLIPFNPIGSVSQ 309 (375)
Q Consensus 261 ~g~~v~i~~v-li~gvND~~e~~~~L~~~l~~~~~-~vnLip~np~~~~~~ 309 (375)
.+..+.+..- ++.-.++++++++++.+|+..++. .+++.+|.|. ++++
T Consensus 296 ~~~gi~v~~~~IvG~PgET~ed~~~tl~~i~~~~~~~~~~~~~sp~-pGT~ 345 (444)
T PRK14325 296 ARPDIAISSDFIVGFPGETDEDFEATMKLIEDVGFDQSFSFIYSPR-PGTP 345 (444)
T ss_pred HCCCCEEEeeEEEECCCCCHHHHHHHHHHHHhcCCCeeeeeeccCC-CCCc
Confidence 5333444433 333357899999999999999875 4666677776 4443
No 87
>TIGR00539 hemN_rel putative oxygen-independent coproporphyrinogen III oxidase. Experimentally determined examples of oxygen-independent coproporphyrinogen III oxidase, an enzyme that replaces HemF function under anaerobic conditions, belong to a family of proteins described by the model hemN. This model, hemN_rel, models a closely related protein, shorter at the amino end and lacking the region containing the motif PYRT[SC]YP found in members of the hemN family. Several species, including E. coli, Helicobacter pylori, Aquifex aeolicus, and Chlamydia trachomatis, have members of both this family and the E. coli hemN family. The member of this family from Bacillus subtilis was shown to complement an hemF/hemN double mutant of Salmonella typimurium and to prevent accumulation of coproporphyrinogen III under anaerobic conditions, but the exact role of this protein is still uncertain. It is found in a number of species that do not synthesize heme de novo.
Probab=99.20 E-value=3.6e-09 Score=104.87 Aligned_cols=201 Identities=15% Similarity=0.203 Sum_probs=128.5
Q ss_pred EEEEeecCCCCCcCccccCCCCCcccCCCHH----HHHHHHHHhhh-h--CCcceEEEEeCCCccc-CHHHHHHHHHHhh
Q 017203 118 TLCISSQVGCKMGCNFCATGTMGFKSNLSSG----EIVEQLVHASR-L--SNIRNVVFMGMGEPLN-NYAALVEAVRIMT 189 (375)
Q Consensus 118 tl~vssq~GCnl~C~fC~~~~~~~~r~lt~~----ei~~qi~~~~~-~--~~i~~Ivf~GmGEPll-n~~~l~~~i~~l~ 189 (375)
.+.| .-|+.+|.||......... -..+ .+..++..... . ..+..|.|.| |+|++ ..+.+.++++.++
T Consensus 4 YiHi---PFC~~~C~yC~f~~~~~~~-~~~~~y~~~l~~Ei~~~~~~~~~~~v~~i~~GG-GtPs~l~~~~l~~ll~~i~ 78 (360)
T TIGR00539 4 YIHI---PFCENKCGYCDFNSYENKS-GPKEEYTQALCQDLKHALSQTDQEPLESIFIGG-GTPNTLSVEAFERLFESIY 78 (360)
T ss_pred EEEe---CCCcCcCCCCCCcccCcCc-cCHHHHHHHHHHHHHHHHHhcCCCcccEEEeCC-CchhcCCHHHHHHHHHHHH
Confidence 4455 6799999999865432111 1222 23333332211 1 2478899999 99985 5678888888776
Q ss_pred CC-CCCCCCCeEEEEeCCch---hhHHHHhhhCCCceEEEEecCCCHHHHhhhcCCCCCCCHHHHHHHHHHHHHhcCCc-
Q 017203 190 GL-PFQVSPKRITVSTVGIV---HAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQK- 264 (375)
Q Consensus 190 ~~-g~~i~~~~itisTnG~~---~~i~~l~~~~~~v~laiSL~a~~~~~r~~i~p~~~~~~~~~vl~~l~~~~~~~g~~- 264 (375)
+. .+. ....+++.||+-. ..++.|.+.+ ...+.|++.+.+++..+.+ ++..+.+++++++ +.+++.|..
T Consensus 79 ~~~~~~-~~~eitie~np~~lt~e~l~~l~~~G-v~risiGvqS~~~~~l~~l---gR~~~~~~~~~ai-~~l~~~G~~~ 152 (360)
T TIGR00539 79 QHASLS-DDCEITTEANPELITAEWCKGLKGAG-INRLSLGVQSFRDDKLLFL---GRQHSAKNIAPAI-ETALKSGIEN 152 (360)
T ss_pred HhCCCC-CCCEEEEEeCCCCCCHHHHHHHHHcC-CCEEEEecccCChHHHHHh---CCCCCHHHHHHHH-HHHHHcCCCe
Confidence 43 221 1257999999843 2455666654 3578999999999998887 4567899999999 456677764
Q ss_pred EEEEEEeeCCCCCCHHHHHHHHHHHhcCCC-EEEEeecCCCCCCCCC-----CCCcHHHHHHH----HHHHHhcCCce
Q 017203 265 IFIEYIMLDGVNDEEQHAHQLGKLLETFQV-VVNLIPFNPIGSVSQF-----RTSSDDKVSSF----QKILRGSYNIR 332 (375)
Q Consensus 265 v~i~~vli~gvND~~e~~~~L~~~l~~~~~-~vnLip~np~~~~~~~-----~~~s~e~i~~f----~~~l~~~~Gi~ 332 (375)
+.+-.+ +.-.+++.+++.+.++++..+++ ++.+.++.|. +++++ ..|+.++..++ .+.|+ ..|+.
T Consensus 153 v~~dli-~GlPgqt~~~~~~~l~~~~~l~~~~is~y~l~~~-~gT~~~~~~~~~~~~~~~~~~~~~~~~~L~-~~Gy~ 227 (360)
T TIGR00539 153 ISLDLM-YGLPLQTLNSLKEELKLAKELPINHLSAYALSVE-PNTNFEKNAKKLPDDDSCAHFDEVVREILE-GFGFK 227 (360)
T ss_pred EEEecc-CCCCCCCHHHHHHHHHHHHccCCCEEEeecceEc-CCChhhhhhhcCcCHHHHHHHHHHHHHHHH-HcCCc
Confidence 444322 22235788999999999999986 5777777766 33322 13455444443 34455 46654
No 88
>PRK06245 cofG FO synthase subunit 1; Reviewed
Probab=99.20 E-value=1.2e-09 Score=107.24 Aligned_cols=192 Identities=14% Similarity=0.182 Sum_probs=122.5
Q ss_pred EEeecCCCCCcCccccCCCC-CcccCCCHHHHHHHHHHhhhhCCcceEEEEeCCCc-ccCH------------HHHHHHH
Q 017203 120 CISSQVGCKMGCNFCATGTM-GFKSNLSSGEIVEQLVHASRLSNIRNVVFMGMGEP-LNNY------------AALVEAV 185 (375)
Q Consensus 120 ~vssq~GCnl~C~fC~~~~~-~~~r~lt~~ei~~qi~~~~~~~~i~~Ivf~GmGEP-lln~------------~~l~~~i 185 (375)
++..+.||+.+|.||..... +..+.++++||++++..... .++..|.|+| ||+ .+.+ ..+.+.+
T Consensus 15 ~i~~Tn~C~~~C~fC~~~~~~~~~~~ls~eei~~~~~~~~~-~G~~ei~l~g-G~~p~~~~~~~~~~~~~~g~~~~~~~i 92 (336)
T PRK06245 15 FIPLTYECRNRCGYCTFRRDPGQPSLLSPEEVKEILRRGAD-AGCTEALFTF-GEVPDESYERIKEQLAEMGYSSILEYL 92 (336)
T ss_pred eeeccccccCCCccCCCcCCCCccCcCCHHHHHHHHHHHHH-CCCCEEEEec-CCCCccchhhhhhhhhhhhHHHHHHHH
Confidence 44556999999999986532 23357999999999998766 3788999999 998 4442 2334444
Q ss_pred HHhh----CCCCCCCCCeEEEEeCC--chh-hHHHHhhhCCCceEEEEecCCCHHHHhhhcCCCCCCCHHHHHHHHHHHH
Q 017203 186 RIMT----GLPFQVSPKRITVSTVG--IVH-AINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQ 258 (375)
Q Consensus 186 ~~l~----~~g~~i~~~~itisTnG--~~~-~i~~l~~~~~~v~laiSL~a~~~~~r~~i~p~~~~~~~~~vl~~l~~~~ 258 (375)
+.+. +.|+ .. .+|. +.+ .+..|++.. +.+.+++.+.++...+.+-...++...++.++.++ .+
T Consensus 93 ~~i~~~~~~~g~-----~~--~~~~~~lt~e~i~~Lk~ag--~~l~~~~et~~e~l~~~v~~~~~~~~~~~~l~~i~-~a 162 (336)
T PRK06245 93 YDLCELALEEGL-----LP--HTNAGILTREEMEKLKEVN--ASMGLMLEQTSPRLLNTVHRGSPGKDPELRLETIE-NA 162 (336)
T ss_pred HHHHHHHhhcCC-----Cc--cccCCCCCHHHHHHHHHhC--CCCCCCccccchhhHHhhccCCCCCCHHHHHHHHH-HH
Confidence 3332 2231 12 3333 222 456666643 45566778888877655422222346778888884 45
Q ss_pred HhcCCcEEEEEEeeCCCCCCHHHHHHHHHHHhcCC-----C-EEEEeecCCCCCCC---CCCCCcHHHHHHHHHHHH
Q 017203 259 KNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQ-----V-VVNLIPFNPIGSVS---QFRTSSDDKVSSFQKILR 326 (375)
Q Consensus 259 ~~~g~~v~i~~vli~gvND~~e~~~~L~~~l~~~~-----~-~vnLip~np~~~~~---~~~~~s~e~i~~f~~~l~ 326 (375)
.+.|.++..- ++=|++++.++..+...+++.+. + .+.+.+|.|.. ++ ....++.+++.++....+
T Consensus 163 ~~~Gi~~~~~--~i~G~gEt~ed~~~~l~~l~~l~~~~gg~~~~~~~~f~P~~-~T~~~~~~~~s~~e~l~~ia~~R 236 (336)
T PRK06245 163 GKLKIPFTTG--ILIGIGETWEDRAESLEAIAELHERYGHIQEVIIQNFSPKP-GIPMENHPEPSLEEMLRVVALAR 236 (336)
T ss_pred HHcCCceeee--eeeECCCCHHHHHHHHHHHHHHHHhhCCCcEEecCCCcCCC-CCCcccCCCcCHHHHHHHHHHHH
Confidence 5677765432 33356889999988777777663 2 36677888873 33 345677777777666655
No 89
>TIGR00510 lipA lipoate synthase. The family shows strong sequence conservation.
Probab=99.20 E-value=4.8e-09 Score=101.16 Aligned_cols=205 Identities=13% Similarity=0.109 Sum_probs=136.7
Q ss_pred ceEEEEeecCCCCCcCccccCCCCCcccCCCHHHHHHHHHHhhhhCCcceEEEEeCCC-ccc---CHHHHHHHHHHhhCC
Q 017203 116 RSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSNIRNVVFMGMGE-PLN---NYAALVEAVRIMTGL 191 (375)
Q Consensus 116 r~tl~vssq~GCnl~C~fC~~~~~~~~r~lt~~ei~~qi~~~~~~~~i~~Ivf~GmGE-Pll---n~~~l~~~i~~l~~~ 191 (375)
+...|+..|.||+.+|.||......-....+++|+.+.+..+.. .+++.|+|+| |+ +-+ ..+.+.++++.+++.
T Consensus 62 ~tatfm~i~~gC~~~C~FC~v~~~rg~~~~~~eei~~~a~~~~~-~GlkevvLTs-v~~ddl~d~g~~~l~~li~~I~~~ 139 (302)
T TIGR00510 62 GTATFMILGDICTRRCPFCDVAHGRNPLPPDPEEPAKLAETIKD-MGLKYVVITS-VDRDDLEDGGASHLAECIEAIREK 139 (302)
T ss_pred CEEEEEecCcCcCCCCCcCCccCCCCCCCCCHHHHHHHHHHHHH-CCCCEEEEEe-ecCCCcccccHHHHHHHHHHHHhc
Confidence 45666667799999999998754321223578998888887765 4789999999 54 322 235688999999875
Q ss_pred CCCCCCCeEEEEeC---CchhhHHHHhhhCCCceEEEEecCCCHHHHhhhcCCCCCCCHHHHHHHHHHHHHhcCCcEEEE
Q 017203 192 PFQVSPKRITVSTV---GIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIE 268 (375)
Q Consensus 192 g~~i~~~~itisTn---G~~~~i~~l~~~~~~v~laiSL~a~~~~~r~~i~p~~~~~~~~~vl~~l~~~~~~~g~~v~i~ 268 (375)
. +..++.+.|. |....+..+.+.++. .+..-+.+. +..+..+- +.++.++.++.++. +++....+.+.
T Consensus 140 ~---p~i~Ievl~~d~~g~~e~l~~l~~aG~d-v~~hnlEt~-~~l~~~vr---r~~t~e~~Le~l~~-ak~~~pgi~~~ 210 (302)
T TIGR00510 140 L---PNIKIETLVPDFRGNIAALDILLDAPPD-VYNHNLETV-ERLTPFVR---PGATYRWSLKLLER-AKEYLPNLPTK 210 (302)
T ss_pred C---CCCEEEEeCCcccCCHHHHHHHHHcCch-hhcccccch-HHHHHHhC---CCCCHHHHHHHHHH-HHHhCCCCeec
Confidence 2 1245666663 333346667766542 233334444 55666653 46789999999954 45554445666
Q ss_pred EEeeCCCCCCHHHHHHHHHHHhcCCCE-EEEeec-CCCCCCCC-CCCCcHHHHHHHHHHHHhcCCce
Q 017203 269 YIMLDGVNDEEQHAHQLGKLLETFQVV-VNLIPF-NPIGSVSQ-FRTSSDDKVSSFQKILRGSYNIR 332 (375)
Q Consensus 269 ~vli~gvND~~e~~~~L~~~l~~~~~~-vnLip~-np~~~~~~-~~~~s~e~i~~f~~~l~~~~Gi~ 332 (375)
.-+|=|+.++++++.+..++++++++. +.+-+| .|.....+ -+..++++.+.++++.. +.|+.
T Consensus 211 TgiIVGlGETeee~~etl~~Lrelg~d~v~igqYl~p~~~~~~v~~~~~p~~f~~~~~~a~-~~gf~ 276 (302)
T TIGR00510 211 SGIMVGLGETNEEIKQTLKDLRDHGVTMVTLGQYLRPSRRHLPVKRYVSPEEFDYYRSVAL-EMGFL 276 (302)
T ss_pred ceEEEECCCCHHHHHHHHHHHHhcCCCEEEeecccCCCCCCCccccCCCHHHHHHHHHHHH-HcCCh
Confidence 666668899999999999999999975 666665 45321111 12345678888888887 68874
No 90
>PRK14331 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=99.20 E-value=2.2e-09 Score=109.10 Aligned_cols=183 Identities=13% Similarity=0.228 Sum_probs=124.3
Q ss_pred ceEEEEeecCCCCCcCccccCCCC-CcccCCCHHHHHHHHHHhhhhCCcceEEEEeCCCcccCH-----HHHHHHHHHhh
Q 017203 116 RSTLCISSQVGCKMGCNFCATGTM-GFKSNLSSGEIVEQLVHASRLSNIRNVVFMGMGEPLNNY-----AALVEAVRIMT 189 (375)
Q Consensus 116 r~tl~vssq~GCnl~C~fC~~~~~-~~~r~lt~~ei~~qi~~~~~~~~i~~Ivf~GmGEPlln~-----~~l~~~i~~l~ 189 (375)
+...++..+.|||.+|.||..+.. +..|..++++|++++..... .++..|+|+| ...+... ..+.++++.+.
T Consensus 145 ~~~a~v~i~rGC~~~CsFC~~p~~~g~~rsr~~e~V~~Ei~~l~~-~g~~eI~l~d-~~~~~y~~~~~~~~~~~Ll~~l~ 222 (437)
T PRK14331 145 KYCAYVTVMRGCDKKCTYCVVPKTRGKERSRRLGSILDEVQWLVD-DGVKEIHLIG-QNVTAYGKDIGDVPFSELLYAVA 222 (437)
T ss_pred CcEEEEEeccCcCCCCccCCcccCCCCcccCCHHHHHHHHHHHHH-CCCeEEEEee-eccccccCCCCCCCHHHHHHHHh
Confidence 456777878999999999988643 34477899999999988765 4678999998 6665421 24667777776
Q ss_pred CC-CCCCCCCeEEEEeCC---chhh-HHHHhhhC-CCceEEEEecCCCHHHHhhhcCCCCCCCHHHHHHHHHHHHHhcCC
Q 017203 190 GL-PFQVSPKRITVSTVG---IVHA-INKFHSDL-PGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQ 263 (375)
Q Consensus 190 ~~-g~~i~~~~itisTnG---~~~~-i~~l~~~~-~~v~laiSL~a~~~~~r~~i~p~~~~~~~~~vl~~l~~~~~~~g~ 263 (375)
+. |+ .++.+++.- +.+. ++.+++.. .-..+.+++.+.+++..+.+ ++.++.+++.++++.+ ++...
T Consensus 223 ~~~g~----~~i~~~~~~p~~l~~ell~~~~~~~~~~~~l~igiqSgsd~vLk~m---~R~~t~~~~~~~v~~l-r~~~~ 294 (437)
T PRK14331 223 EIDGV----ERIRFTTGHPRDLDEDIIKAMADIPQVCEHLHLPFQAGSDRILKLM---DRGYTKEEYLEKIELL-KEYIP 294 (437)
T ss_pred cCCCc----cEEEEeccCcccCCHHHHHHHHcCCccCCceecccccCChHHHHHc---CCCCCHHHHHHHHHHH-HHhCC
Confidence 54 42 346665522 2233 33444332 12458889999999887765 5678999999999544 45522
Q ss_pred cEEEEE-EeeCCCCCCHHHHHHHHHHHhcCCC-EEEEeecCCCCCCCC
Q 017203 264 KIFIEY-IMLDGVNDEEQHAHQLGKLLETFQV-VVNLIPFNPIGSVSQ 309 (375)
Q Consensus 264 ~v~i~~-vli~gvND~~e~~~~L~~~l~~~~~-~vnLip~np~~~~~~ 309 (375)
.+.+.. +++.-..++++++++..+|+++++. .+++.+|.|. ++++
T Consensus 295 gi~i~~d~IvG~PgET~ed~~~tl~~l~~l~~~~i~~f~~sp~-pGT~ 341 (437)
T PRK14331 295 DITFSTDIIVGFPTETEEDFEETLDVLKKVEFEQVFSFKYSPR-PGTP 341 (437)
T ss_pred CCEEecCEEEECCCCCHHHHHHHHHHHHhcCcceeeeeEecCC-CCcc
Confidence 333333 2333346789999999999999986 4676778776 4443
No 91
>PRK06267 hypothetical protein; Provisional
Probab=99.20 E-value=3.4e-09 Score=104.56 Aligned_cols=186 Identities=16% Similarity=0.247 Sum_probs=131.4
Q ss_pred cCCCC--CcCccccCCCCC------cccCCCHHHHHHHHHHhhhhCCcceEEEEeCCCcccCHHHHHHHHHHhhCCCCCC
Q 017203 124 QVGCK--MGCNFCATGTMG------FKSNLSSGEIVEQLVHASRLSNIRNVVFMGMGEPLNNYAALVEAVRIMTGLPFQV 195 (375)
Q Consensus 124 q~GCn--l~C~fC~~~~~~------~~r~lt~~ei~~qi~~~~~~~~i~~Ivf~GmGEPlln~~~l~~~i~~l~~~g~~i 195 (375)
..+|+ .+|.||+..... ....+++++|++.+..+... +++.+.++| |+++ ..+.+.++++.++...
T Consensus 34 S~~C~l~~~C~FC~~s~~~~~i~~~~~~~~s~eeI~eea~~~~~~-Gv~~~~lsg-G~~~-~~~el~~i~e~I~~~~--- 107 (350)
T PRK06267 34 GWYCNLKGPCKFCYMSTQKDKIKDPLKARRRVESILAEAILMKRI-GWKLEFISG-GYGY-TTEEINDIAEMIAYIQ--- 107 (350)
T ss_pred cCCCcCCCCCcCCCCcccCCccCccccccCCHHHHHHHHHHHHHc-CCCEEEEec-CCCC-CHHHHHHHHHHHHHhh---
Confidence 38999 789999765421 12467999999999877653 577788999 9995 4577888888887652
Q ss_pred CCCeEEEEeCCchhhHHHHhhhCCCceEEEEecCCCHHHHhhhcCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEEeeCCC
Q 017203 196 SPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGV 275 (375)
Q Consensus 196 ~~~~itisTnG~~~~i~~l~~~~~~v~laiSL~a~~~~~r~~i~p~~~~~~~~~vl~~l~~~~~~~g~~v~i~~vli~gv 275 (375)
...+.++. |.... ..+.... ...+..++++.+++.+..+.| ..++++.++.++ .+++.|.++...+++ |.
T Consensus 108 -~~~~~~s~-G~~d~-~~~~~~~-l~Gv~g~~ET~~~~~~~~i~~---~~s~ed~~~~l~-~ak~aGi~v~~g~Ii--Gl 177 (350)
T PRK06267 108 -GCKQYLNV-GIIDF-LNINLNE-IEGVVGAVETVNPKLHREICP---GKPLDKIKEMLL-KAKDLGLKTGITIIL--GL 177 (350)
T ss_pred -CCceEeec-ccCCH-HHHhhcc-ccCceeeeecCCHHHHHhhCC---CCCHHHHHHHHH-HHHHcCCeeeeeEEE--eC
Confidence 02355553 33322 2222211 123456789999999998865 358999999994 667889887655444 35
Q ss_pred CCCHHHHHHHHHHHhcCCCE-EEEeecCCCCCCC---CCCCCcHHHHHHHHHHHH
Q 017203 276 NDEEQHAHQLGKLLETFQVV-VNLIPFNPIGSVS---QFRTSSDDKVSSFQKILR 326 (375)
Q Consensus 276 ND~~e~~~~L~~~l~~~~~~-vnLip~np~~~~~---~~~~~s~e~i~~f~~~l~ 326 (375)
+.+.+++.+++++++++++. +.+.+|.|. +++ +.++++.+++.++...++
T Consensus 178 gEt~ed~~~~l~~l~~l~~d~v~~~~L~P~-pGTp~~~~~~~s~~e~lr~ia~~R 231 (350)
T PRK06267 178 GETEDDIEKLLNLIEELDLDRITFYSLNPQ-KGTIFENKPSVTTLEYMNWVSSVR 231 (350)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEEeeeEC-CCCcCCCCCCCCHHHHHHHHHHHH
Confidence 67899999999999999864 677777777 444 356678888888877766
No 92
>PRK14328 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=99.19 E-value=2.3e-09 Score=108.96 Aligned_cols=182 Identities=10% Similarity=0.194 Sum_probs=122.9
Q ss_pred ceEEEEeecCCCCCcCccccCCCC-CcccCCCHHHHHHHHHHhhhhCCcceEEEEeCCCcccC------HHHHHHHHHHh
Q 017203 116 RSTLCISSQVGCKMGCNFCATGTM-GFKSNLSSGEIVEQLVHASRLSNIRNVVFMGMGEPLNN------YAALVEAVRIM 188 (375)
Q Consensus 116 r~tl~vssq~GCnl~C~fC~~~~~-~~~r~lt~~ei~~qi~~~~~~~~i~~Ivf~GmGEPlln------~~~l~~~i~~l 188 (375)
+...+|..|.|||.+|.||..+.. +..|..++++|++++..... .++..|+|+| ..-+.. -..+.++++.+
T Consensus 146 ~~~~~i~i~rGC~~~CsfC~~p~~~g~~Rsr~~e~Iv~Ei~~l~~-~G~~ei~l~~-~~~~~yg~d~~~~~~l~~Ll~~l 223 (439)
T PRK14328 146 KVKAFVTIMYGCNNFCTYCIVPYVRGRERSRKPEDIIAEIKELVS-EGYKEVTLLG-QNVNSYGKDLEEKIDFADLLRRV 223 (439)
T ss_pred CcEEEEEHHhCcCCCCCCCCcccccCCcccCCHHHHHHHHHHHHH-CCCcEEEEec-cccCcCCcCCCCCcCHHHHHHHH
Confidence 456788889999999999988643 34578899999999988665 3678899988 543321 02366777777
Q ss_pred hCC-CCCCCCCeEEEEeC---Cchhh-HHHHhhhC-CCceEEEEecCCCHHHHhhhcCCCCCCCHHHHHHHHHHHHHhcC
Q 017203 189 TGL-PFQVSPKRITVSTV---GIVHA-INKFHSDL-PGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQ 262 (375)
Q Consensus 189 ~~~-g~~i~~~~itisTn---G~~~~-i~~l~~~~-~~v~laiSL~a~~~~~r~~i~p~~~~~~~~~vl~~l~~~~~~~g 262 (375)
.+. ++ .++.+++. .+.+. ++.+++.. ....+.+.+.+.+++..+.+ +++++.++++++++.+ ++..
T Consensus 224 ~~~~~~----~~ir~~~~~P~~i~~ell~~l~~~~~~~~~l~iglQSgsd~vLk~M---~R~~~~~~~~~~i~~l-r~~~ 295 (439)
T PRK14328 224 NEIDGL----ERIRFMTSHPKDLSDDLIEAIADCDKVCEHIHLPVQSGSNRILKKM---NRHYTREYYLELVEKI-KSNI 295 (439)
T ss_pred HhcCCC----cEEEEecCChhhcCHHHHHHHHhCCCcCceeeeCCCcCCHHHHHhC---CCCCCHHHHHHHHHHH-HHhC
Confidence 653 32 34555442 22233 33444332 12368888999999887764 5678899999999654 4443
Q ss_pred CcEEEEEE-eeCCCCCCHHHHHHHHHHHhcCCC-EEEEeecCCCCCCC
Q 017203 263 QKIFIEYI-MLDGVNDEEQHAHQLGKLLETFQV-VVNLIPFNPIGSVS 308 (375)
Q Consensus 263 ~~v~i~~v-li~gvND~~e~~~~L~~~l~~~~~-~vnLip~np~~~~~ 308 (375)
..+.+..- ++.-.+++++++++.+++++.++. .+++.+|.|. +++
T Consensus 296 ~~i~i~~d~IvG~PgET~ed~~~tl~~i~~l~~~~~~~~~~sp~-pGT 342 (439)
T PRK14328 296 PDVAITTDIIVGFPGETEEDFEETLDLVKEVRYDSAFTFIYSKR-KGT 342 (439)
T ss_pred CCCEEEEEEEEECCCCCHHHHHHHHHHHHhcCCCcccceEecCC-CCC
Confidence 34444433 333357899999999999999875 4777788877 444
No 93
>PRK14327 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=99.19 E-value=4.9e-09 Score=107.93 Aligned_cols=185 Identities=12% Similarity=0.242 Sum_probs=126.3
Q ss_pred CceEEEEeecCCCCCcCccccCCC-CCcccCCCHHHHHHHHHHhhhhCCcceEEEEeC-----CCcccC-HHHHHHHHHH
Q 017203 115 PRSTLCISSQVGCKMGCNFCATGT-MGFKSNLSSGEIVEQLVHASRLSNIRNVVFMGM-----GEPLNN-YAALVEAVRI 187 (375)
Q Consensus 115 ~r~tl~vssq~GCnl~C~fC~~~~-~~~~r~lt~~ei~~qi~~~~~~~~i~~Ivf~Gm-----GEPlln-~~~l~~~i~~ 187 (375)
.+...+|..+.|||.+|.||..+. .|..+..++++|++++..... .++..|+|.|. |..+.+ ...+.++++.
T Consensus 210 ~~~~a~v~I~~GC~~~CsFC~vp~~rG~~Rsr~~e~Ii~Ei~~l~~-~G~keI~L~g~n~~~yg~d~~~~~~~l~~Ll~~ 288 (509)
T PRK14327 210 GNIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQEVRHLAR-QGYKEITLLGQNVNAYGKDFEDIEYGLGDLMDE 288 (509)
T ss_pred CCeEEEEEecCCCCCCCcCCcccccCCCCeeCCHHHHHHHHHHHHH-CCCcEEEEEeeccccCcccccccchHHHHHHHH
Confidence 457888999999999999998854 344578899999999988765 35778888872 322222 1246777888
Q ss_pred hhCCCCCCCCCeEEEEeCC---chhhHHHHhhhCCCc--eEEEEecCCCHHHHhhhcCCCCCCCHHHHHHHHHHHHHhcC
Q 017203 188 MTGLPFQVSPKRITVSTVG---IVHAINKFHSDLPGL--NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQ 262 (375)
Q Consensus 188 l~~~g~~i~~~~itisTnG---~~~~i~~l~~~~~~v--~laiSL~a~~~~~r~~i~p~~~~~~~~~vl~~l~~~~~~~g 262 (375)
+.+.+ + .++.++|.- +.+.+.++....+.+ .+.+.+.+.+++..+.+ +++++.++.+++++. +++..
T Consensus 289 I~~~~--i--~~ir~~s~~P~~i~deli~~m~~~g~~~~~l~lgvQSgsd~vLk~M---~R~~t~e~~~~~v~~-lr~~~ 360 (509)
T PRK14327 289 IRKID--I--PRVRFTTSHPRDFDDHLIEVLAKGGNLVEHIHLPVQSGSTEVLKIM---ARKYTRESYLELVRK-IKEAI 360 (509)
T ss_pred HHhCC--C--ceEEEeecCcccCCHHHHHHHHhcCCccceEEeccCCCCHHHHHhc---CCCCCHHHHHHHHHH-HHHhC
Confidence 76544 2 356666532 222333333333322 58899999999887664 677899999999954 45554
Q ss_pred CcEEEEEE-eeCCCCCCHHHHHHHHHHHhcCCC-EEEEeecCCCCCCCC
Q 017203 263 QKIFIEYI-MLDGVNDEEQHAHQLGKLLETFQV-VVNLIPFNPIGSVSQ 309 (375)
Q Consensus 263 ~~v~i~~v-li~gvND~~e~~~~L~~~l~~~~~-~vnLip~np~~~~~~ 309 (375)
..+.+..- ++.-.+++++++++.++|+..++. .+++.+|.|. ++++
T Consensus 361 p~i~i~tdiIvGfPgET~edf~~Tl~~v~~l~~d~~~~f~yspr-pGT~ 408 (509)
T PRK14327 361 PNVALTTDIIVGFPNETDEQFEETLSLYREVGFDHAYTFIYSPR-EGTP 408 (509)
T ss_pred CCcEEeeeEEEeCCCCCHHHHHHHHHHHHHcCCCeEEEeeeeCC-CCCc
Confidence 45555443 333356899999999999999975 4777788876 4554
No 94
>PRK14326 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=99.18 E-value=4.5e-09 Score=108.36 Aligned_cols=183 Identities=14% Similarity=0.278 Sum_probs=122.8
Q ss_pred ceEEEEeecCCCCCcCccccCCCC-CcccCCCHHHHHHHHHHhhhhCCcceEEEEeC-----CCcccCHHHHHHHHHHhh
Q 017203 116 RSTLCISSQVGCKMGCNFCATGTM-GFKSNLSSGEIVEQLVHASRLSNIRNVVFMGM-----GEPLNNYAALVEAVRIMT 189 (375)
Q Consensus 116 r~tl~vssq~GCnl~C~fC~~~~~-~~~r~lt~~ei~~qi~~~~~~~~i~~Ivf~Gm-----GEPlln~~~l~~~i~~l~ 189 (375)
+...+|.++.|||++|.||..+.. |..+..++++|++++...... ++..|+|.|. |--+.+...+.++++.+.
T Consensus 156 ~~~a~v~isrGCp~~CsFC~ip~~rG~~rsr~~e~Vv~Ei~~l~~~-g~~ei~l~d~n~~~yG~d~~~~~~l~~Ll~~l~ 234 (502)
T PRK14326 156 AYAAWVSISVGCNNTCTFCIVPSLRGKEKDRRPGDILAEVQALVDE-GVLEVTLLGQNVNAYGVSFGDRGAFSKLLRACG 234 (502)
T ss_pred CceEEEEEccCCCCCCccCceeccCCCcccCCHHHHHHHHHHHHHC-CCceEEEEeecccccccCCCCHHHHHHHHHHHH
Confidence 355788888999999999998643 445778999999999887653 5788888772 211234445677777766
Q ss_pred CC-CCCCCCCeEEEEeC---Cchhh-HHHHhhhCC-CceEEEEecCCCHHHHhhhcCCCCCCCHHHHHHHHHHHHHhcCC
Q 017203 190 GL-PFQVSPKRITVSTV---GIVHA-INKFHSDLP-GLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQ 263 (375)
Q Consensus 190 ~~-g~~i~~~~itisTn---G~~~~-i~~l~~~~~-~v~laiSL~a~~~~~r~~i~p~~~~~~~~~vl~~l~~~~~~~g~ 263 (375)
.. ++ .++.+++. .+.+. +..+++... ...|.+.+.+.+++..+.+ +++++.+++.++++.+ ++.+.
T Consensus 235 ~i~~l----~~ir~~~~~p~~~~~ell~~m~~~g~~~~~l~lglQSgsd~iLk~m---~R~~t~~~~~~~v~~l-r~~~~ 306 (502)
T PRK14326 235 EIDGL----ERVRFTSPHPAEFTDDVIEAMAETPNVCPQLHMPLQSGSDRVLRAM---RRSYRSERFLGILEKV-RAAMP 306 (502)
T ss_pred hcCCc----cEEEEeccChhhCCHHHHHHHHhcCCcCCcEEeccCCCCHHHHHhc---CCCCCHHHHHHHHHHH-HHhCC
Confidence 44 42 24555542 22233 333433321 2468899999999887765 6778999999999654 44433
Q ss_pred cEEEEEEeeCC-CCCCHHHHHHHHHHHhcCCCE-EEEeecCCCCCCC
Q 017203 264 KIFIEYIMLDG-VNDEEQHAHQLGKLLETFQVV-VNLIPFNPIGSVS 308 (375)
Q Consensus 264 ~v~i~~vli~g-vND~~e~~~~L~~~l~~~~~~-vnLip~np~~~~~ 308 (375)
.+.+..-+|=| .++++++++++++|++.++.. +++.+|.|. +++
T Consensus 307 ~i~i~~~~IvGfPgET~edf~~Tl~~i~~~~~~~~~~f~~sp~-pGT 352 (502)
T PRK14326 307 DAAITTDIIVGFPGETEEDFQATLDVVREARFSSAFTFQYSKR-PGT 352 (502)
T ss_pred CCeEEEEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEEeecCC-CCC
Confidence 33333333333 578999999999999998753 666678776 444
No 95
>PRK05660 HemN family oxidoreductase; Provisional
Probab=99.18 E-value=5.7e-09 Score=104.11 Aligned_cols=177 Identities=11% Similarity=0.145 Sum_probs=120.3
Q ss_pred eEEEEeecCCCCCcCccccCCCCCcccCCCHHH----HHHHHHHhhh---hCCcceEEEEeCCCcccC-HHHHHHHHHHh
Q 017203 117 STLCISSQVGCKMGCNFCATGTMGFKSNLSSGE----IVEQLVHASR---LSNIRNVVFMGMGEPLNN-YAALVEAVRIM 188 (375)
Q Consensus 117 ~tl~vssq~GCnl~C~fC~~~~~~~~r~lt~~e----i~~qi~~~~~---~~~i~~Ivf~GmGEPlln-~~~l~~~i~~l 188 (375)
..+.| .=|+.+|.||...........+.++ +++++..... ..++..|.|.| |+|++- .+.+.++++.+
T Consensus 9 lYiHi---PFC~~~C~yC~f~~~~~~~~~~~~~Y~~~l~~Ei~~~~~~~~~~~v~ti~~GG-GtPs~l~~~~l~~ll~~l 84 (378)
T PRK05660 9 LYIHI---PWCVQKCPYCDFNSHALKGEVPEDEYVDHLLADLDADLPLVQGREVHSIFIGG-GTPSLFSAEAIQRLLDGV 84 (378)
T ss_pred EEEEe---CCccCcCCCCCCeecCCCCcCCHHHHHHHHHHHHHHHhHhccCCceeEEEeCC-CccccCCHHHHHHHHHHH
Confidence 44555 6799999999875432223344333 4444442111 13578999999 999984 57888999988
Q ss_pred hCC-CCCCCCCeEEEEeCCch---hhHHHHhhhCCCceEEEEecCCCHHHHhhhcCCCCCCCHHHHHHHHHHHHHhcCCc
Q 017203 189 TGL-PFQVSPKRITVSTVGIV---HAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQK 264 (375)
Q Consensus 189 ~~~-g~~i~~~~itisTnG~~---~~i~~l~~~~~~v~laiSL~a~~~~~r~~i~p~~~~~~~~~vl~~l~~~~~~~g~~ 264 (375)
++. ++. ....+++.||+-. ..+..|.+.+ ...+.|++++.+++..+.+ ++..+.++++++++ .+++.|..
T Consensus 85 ~~~~~~~-~~~eit~e~np~~l~~e~l~~Lk~~G-v~risiGvqS~~~~~L~~l---~r~~~~~~~~~ai~-~~~~~G~~ 158 (378)
T PRK05660 85 RARLPFA-PDAEITMEANPGTVEADRFVGYQRAG-VNRISIGVQSFSEEKLKRL---GRIHGPDEAKRAAK-LAQGLGLR 158 (378)
T ss_pred HHhCCCC-CCcEEEEEeCcCcCCHHHHHHHHHcC-CCEEEeccCcCCHHHHHHh---CCCCCHHHHHHHHH-HHHHcCCC
Confidence 864 321 2257999999643 2456666655 3579999999999998887 45678999999994 56677764
Q ss_pred EEEEEEeeCC-CCCCHHHHHHHHHHHhcCCC-EEEEeecCCC
Q 017203 265 IFIEYIMLDG-VNDEEQHAHQLGKLLETFQV-VVNLIPFNPI 304 (375)
Q Consensus 265 v~i~~vli~g-vND~~e~~~~L~~~l~~~~~-~vnLip~np~ 304 (375)
. +.+-++-| ...+.+++.+.++++..+++ ++.+-++.+.
T Consensus 159 ~-v~~dli~Glpgqt~~~~~~~l~~~~~l~p~~is~y~l~~~ 199 (378)
T PRK05660 159 S-FNLDLMHGLPDQSLEEALDDLRQAIALNPPHLSWYQLTIE 199 (378)
T ss_pred e-EEEEeecCCCCCCHHHHHHHHHHHHhcCCCeEEeeccEec
Confidence 2 23333333 34688999999999999876 4666665544
No 96
>PRK14336 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=99.17 E-value=2.7e-09 Score=107.76 Aligned_cols=183 Identities=16% Similarity=0.251 Sum_probs=124.3
Q ss_pred CceEEEEeecCCCCCcCccccCCCC-CcccCCCHHHHHHHHHHhhhhCCcceEEEEeCCCcccC------HHHHHHHHHH
Q 017203 115 PRSTLCISSQVGCKMGCNFCATGTM-GFKSNLSSGEIVEQLVHASRLSNIRNVVFMGMGEPLNN------YAALVEAVRI 187 (375)
Q Consensus 115 ~r~tl~vssq~GCnl~C~fC~~~~~-~~~r~lt~~ei~~qi~~~~~~~~i~~Ivf~GmGEPlln------~~~l~~~i~~ 187 (375)
.+...++..|.|||.+|.||..+.. |..+..++++|++++..... .++..|+|+| ..-+.. .+.+.++++.
T Consensus 122 ~~~~a~i~i~rGC~~~CsFC~ip~~rG~~rsrs~e~Iv~Ei~~l~~-~G~~ei~l~~-~~~~~yg~d~~~~~~l~~Ll~~ 199 (418)
T PRK14336 122 PPVSANVTIMQGCDNFCTYCVVPYRRGREKSRSIAEIGCEVAELVR-RGSREVVLLG-QNVDSYGHDLPEKPCLADLLSA 199 (418)
T ss_pred CCeEEEEEeccCCCCCCccCCccccCCCCccCCHHHHHHHHHHHHH-CCCeEEEEEe-cCccccccCCCCcccHHHHHHH
Confidence 3466778888999999999988643 44578899999999998765 3678999998 554321 1357778887
Q ss_pred hhCC-CCCCCCCeEEEEeCC---chhh-HHHHhhhC-CCceEEEEecCCCHHHHhhhcCCCCCCCHHHHHHHHHHHHHhc
Q 017203 188 MTGL-PFQVSPKRITVSTVG---IVHA-INKFHSDL-PGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNS 261 (375)
Q Consensus 188 l~~~-g~~i~~~~itisTnG---~~~~-i~~l~~~~-~~v~laiSL~a~~~~~r~~i~p~~~~~~~~~vl~~l~~~~~~~ 261 (375)
+.+. |+ .++.+++.- +.+. ++.+++.. ....+.+.+.+.+++.-+.+ +++++.+++.++++. +++.
T Consensus 200 l~~~~~~----~~ir~~~~~p~~i~~ell~~l~~~~~~~~~l~lglQSgsd~vLk~M---~R~~~~~~~~~~i~~-lr~~ 271 (418)
T PRK14336 200 LHDIPGL----LRIRFLTSHPKDISQKLIDAMAHLPKVCRSLSLPVQAGDDTILAAM---RRGYTNQQYRELVER-LKTA 271 (418)
T ss_pred HHhcCCc----cEEEEeccChhhcCHHHHHHHHhcCccCCceecCCCcCCHHHHHHh---CCCCCHHHHHHHHHH-HHhh
Confidence 7654 31 356665422 2233 23333321 12357788999998887665 567889999999954 4454
Q ss_pred CCcEEEEEE-eeCCCCCCHHHHHHHHHHHhcCCC-EEEEeecCCCCCCC
Q 017203 262 QQKIFIEYI-MLDGVNDEEQHAHQLGKLLETFQV-VVNLIPFNPIGSVS 308 (375)
Q Consensus 262 g~~v~i~~v-li~gvND~~e~~~~L~~~l~~~~~-~vnLip~np~~~~~ 308 (375)
...+.+..- ++...+++.++++++.+|+..++. .+++.+|.|. +++
T Consensus 272 ~pgi~i~~d~IvGfPGET~edf~~tl~fi~~~~~~~~~v~~ysp~-pGT 319 (418)
T PRK14336 272 MPDISLQTDLIVGFPSETEEQFNQSYKLMADIGYDAIHVAAYSPR-PQT 319 (418)
T ss_pred CCCCEEEEEEEEECCCCCHHHHHHHHHHHHhcCCCEEEeeecCCC-CCC
Confidence 222344333 333356899999999999999875 4788888887 454
No 97
>PRK14339 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=99.17 E-value=4.7e-09 Score=106.09 Aligned_cols=183 Identities=11% Similarity=0.269 Sum_probs=123.3
Q ss_pred ceEEEEeecCCCCCcCccccCCCC-CcccCCCHHHHHHHHHHhhhhCCcceEEEEeCCCcccC---------HHHHHHHH
Q 017203 116 RSTLCISSQVGCKMGCNFCATGTM-GFKSNLSSGEIVEQLVHASRLSNIRNVVFMGMGEPLNN---------YAALVEAV 185 (375)
Q Consensus 116 r~tl~vssq~GCnl~C~fC~~~~~-~~~r~lt~~ei~~qi~~~~~~~~i~~Ivf~GmGEPlln---------~~~l~~~i 185 (375)
+...+|.++.|||.+|.||..+.. |..+..++++|++++..... .+++.|+|+| ..-... ...+.+++
T Consensus 126 ~~~a~i~isrGC~~~CsFC~ip~~rG~~~sr~~e~I~~Ei~~l~~-~G~keI~l~~-~~~~~yg~d~~~~~~~~~l~~Ll 203 (420)
T PRK14339 126 PYKSLVNISIGCDKKCTYCIVPHTRGKEISIPMDLILKEAEKAVN-NGAKEIFLLG-QNVNNYGKRFSSEHEKVDFSDLL 203 (420)
T ss_pred CeEEEEEecCCCCCCCCcCCcccccCCCCCCCHHHHHHHHHHHHH-CCCcEEEEee-eccccccCCCcCCcccccHHHHH
Confidence 456778888999999999988753 33455799999999987654 3678899988 332210 01367777
Q ss_pred HHhhCC-CCCCCCCeEEEEe-C--Cchhh-HHHHhhhC-CCceEEEEecCCCHHHHhhhcCCCCCCCHHHHHHHHHHHHH
Q 017203 186 RIMTGL-PFQVSPKRITVST-V--GIVHA-INKFHSDL-PGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQK 259 (375)
Q Consensus 186 ~~l~~~-g~~i~~~~itisT-n--G~~~~-i~~l~~~~-~~v~laiSL~a~~~~~r~~i~p~~~~~~~~~vl~~l~~~~~ 259 (375)
+.+.+. |+ .++.+++ + .+.+. ++.+++.. ....+.|.+.+.+++..+.+ +++++.++++++++.+ +
T Consensus 204 ~~l~~~~g~----~~ir~~s~~p~~~~~ell~~~~~~~~~~~~l~iglQSgsd~vLk~M---~R~~t~~~~~~~v~~l-r 275 (420)
T PRK14339 204 DKLSEIEGL----ERIRFTSPHPLHMDDKFLEEFAKNPKICKSIHMPLQSGSSEILKAM---KRGYTKEWFLNRAEKL-R 275 (420)
T ss_pred HHHhcCCCc----cEEEECCCChhhcCHHHHHHHHcCCCccCceEeCCccCCHHHHHhc---cCCCCHHHHHHHHHHH-H
Confidence 777653 42 3455543 2 12233 33444331 12468899999999887765 6678999999998554 4
Q ss_pred hcCCcEEEEE-EeeCCCCCCHHHHHHHHHHHhcCCCE-EEEeecCCCCCCCC
Q 017203 260 NSQQKIFIEY-IMLDGVNDEEQHAHQLGKLLETFQVV-VNLIPFNPIGSVSQ 309 (375)
Q Consensus 260 ~~g~~v~i~~-vli~gvND~~e~~~~L~~~l~~~~~~-vnLip~np~~~~~~ 309 (375)
+....+.+.. +++.-.++++++++++++|+..++.. +++.+|.|. ++++
T Consensus 276 ~~~p~i~i~~d~IvGfPgETeedf~~Tl~fl~~l~~~~~~~f~~sp~-pGT~ 326 (420)
T PRK14339 276 ALVPEVSISTDIIVGFPGESDKDFEDTMDVLEKVRFEQIFSFKYSPR-PLTE 326 (420)
T ss_pred HHCCCCEEEEEEEEECCCCCHHHHHHHHHHHHhcCCCEEeeEecCCC-CCCc
Confidence 4433344433 34433678999999999999998864 777788887 4554
No 98
>KOG2876 consensus Molybdenum cofactor biosynthesis pathway protein [Coenzyme transport and metabolism]
Probab=99.17 E-value=3.4e-11 Score=110.76 Aligned_cols=182 Identities=19% Similarity=0.295 Sum_probs=129.1
Q ss_pred ceEEEEeecCCCCCcCccccCCCCC----cccCCCHHHHHHHHHHhhhhCCcceEEEEeCCCcccCHHHHHHHHHHhhCC
Q 017203 116 RSTLCISSQVGCKMGCNFCATGTMG----FKSNLSSGEIVEQLVHASRLSNIRNVVFMGMGEPLNNYAALVEAVRIMTGL 191 (375)
Q Consensus 116 r~tl~vssq~GCnl~C~fC~~~~~~----~~r~lt~~ei~~qi~~~~~~~~i~~Ivf~GmGEPlln~~~l~~~i~~l~~~ 191 (375)
+..+-+|.+..||++|.||.-.... ..+.++..|++.....+.. ..++.+-++| |||+.. +++.+...-+.+.
T Consensus 10 htyLrislte~cnlrc~ycMpsegv~l~pk~~~lav~eilrl~~~F~~-qgv~knrLtg-geptIr-~di~~i~~g~~~l 86 (323)
T KOG2876|consen 10 HTYLRISLTEKCNLRCQYCMPSEGVPLKPKRKLLAVSEILRLAGLFAP-QGVDKNRLTG-GEPLIR-QDIVPIVAGLSSL 86 (323)
T ss_pred hhhhhhhhhhccccccceechhcCCcCccchhhcchhhhHHhhhhhhH-hhhhhhhhcC-CCCccc-ccccchhhhhhcc
Confidence 3556677778999999999875432 2355777887774443332 3678899999 999997 5677777777666
Q ss_pred -CCCCCCCeEEEEeCCchh--hHHHHhhhCCCceEEEEecCCCHHHHhhhcCCCCCCCHHHHHHHHHHHHHhcCCcEEEE
Q 017203 192 -PFQVSPKRITVSTVGIVH--AINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIE 268 (375)
Q Consensus 192 -g~~i~~~~itisTnG~~~--~i~~l~~~~~~v~laiSL~a~~~~~r~~i~p~~~~~~~~~vl~~l~~~~~~~g~~v~i~ 268 (375)
|+ +.+.|+|||+.. .+..+.+.+. ..+.+|++....+....+|. +-.+.+|+..+.........++.++
T Consensus 87 ~gL----ks~~ITtng~vl~R~lp~lhkagl-ssiNiSldtl~~aKfa~~~r---r~g~v~V~~~iq~a~~lgy~pvkvn 158 (323)
T KOG2876|consen 87 PGL----KSIGITTNGLVLARLLPQLHKAGL-SSINISLDTLVRAKFAKLTR---RKGFVKVWASIQLAIELGYNPVKVN 158 (323)
T ss_pred cch----hhhceeccchhhhhhhhHHHhhcc-cchhhhhhhhhHHHHHHHhh---hccHHHHHHHHhHHhhhCCCCccee
Confidence 64 678899999863 2344444443 56889999888887777763 4578999999954433333458999
Q ss_pred EEeeCCCCCCHHHHHHHHHHHhcCCCEEEEeecCCCCCCCCCC
Q 017203 269 YIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFR 311 (375)
Q Consensus 269 ~vli~gvND~~e~~~~L~~~l~~~~~~vnLip~np~~~~~~~~ 311 (375)
.++++|+|++ ++-.++.+-+..+..|..|.|.|.. +..|.
T Consensus 159 ~v~~k~~n~~--ev~Dfv~~tr~~p~DVrfIe~mpf~-gn~~~ 198 (323)
T KOG2876|consen 159 CVVMKGLNED--EVFDFVLLTRMRPLDVRFIEFMPFD-GNKWN 198 (323)
T ss_pred eEEEeccCCC--cccceeeecCCCCcceEEEEecccC-CCccc
Confidence 9999999986 4555665556666778888888874 44443
No 99
>PRK13347 coproporphyrinogen III oxidase; Provisional
Probab=99.16 E-value=9.6e-09 Score=104.84 Aligned_cols=176 Identities=13% Similarity=0.152 Sum_probs=119.5
Q ss_pred eEEEEeecCCCCCcCccccCCCCCc-ccCCC---HHHHHHHHHHhhhh----CCcceEEEEeCCCcc-cCHHHHHHHHHH
Q 017203 117 STLCISSQVGCKMGCNFCATGTMGF-KSNLS---SGEIVEQLVHASRL----SNIRNVVFMGMGEPL-NNYAALVEAVRI 187 (375)
Q Consensus 117 ~tl~vssq~GCnl~C~fC~~~~~~~-~r~lt---~~ei~~qi~~~~~~----~~i~~Ivf~GmGEPl-ln~~~l~~~i~~ 187 (375)
.+|+|-. .-|+.+|.||....... ..... .+.+++++...... ..+..|.|.| |+|+ ++++.+.++++.
T Consensus 51 ~~LYvHI-PfC~~~C~yC~~~~~~~~~~~~~~~y~~~L~~Ei~~~~~~~~~~~~v~~i~fgG-GTPs~l~~~~l~~ll~~ 128 (453)
T PRK13347 51 VSLYLHV-PFCRSLCWFCGCNTIITQRDAPVEAYVAALIREIRLVAASLPQRRRVSQLHWGG-GTPTILNPDQFERLMAA 128 (453)
T ss_pred eEEEEEe-CCccccCCCCCCcCcCccccchHHHHHHHHHHHHHHHHHhcCCCCeEEEEEEcC-cccccCCHHHHHHHHHH
Confidence 4454444 56999999997653221 11111 34555555543221 2578899999 9999 567899999999
Q ss_pred hhCC-CCCCCCCeEEEEeCCch--h-hHHHHhhhCCCceEEEEecCCCHHHHhhhcCCCCCCCHHHHHHHHHHHHHhcCC
Q 017203 188 MTGL-PFQVSPKRITVSTVGIV--H-AINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQ 263 (375)
Q Consensus 188 l~~~-g~~i~~~~itisTnG~~--~-~i~~l~~~~~~v~laiSL~a~~~~~r~~i~p~~~~~~~~~vl~~l~~~~~~~g~ 263 (375)
+++. ++. ....+++.||.-. + .++.|.+.+ ...+.|++.+.+++.++.+ ++..+.+++.++++ .+++.|.
T Consensus 129 i~~~~~~~-~~~e~tie~~p~~lt~e~l~~L~~~G-~~rvsiGvQS~~~~vl~~l---~R~~~~~~~~~ai~-~lr~~G~ 202 (453)
T PRK13347 129 LRDAFDFA-PEAEIAVEIDPRTVTAEMLQALAALG-FNRASFGVQDFDPQVQKAI---NRIQPEEMVARAVE-LLRAAGF 202 (453)
T ss_pred HHHhCCCC-CCceEEEEeccccCCHHHHHHHHHcC-CCEEEECCCCCCHHHHHHh---CCCCCHHHHHHHHH-HHHhcCC
Confidence 9875 321 1246889998742 2 355555554 3578899999999998887 55678999999994 5667776
Q ss_pred c-EEEEEE-eeCCCCCCHHHHHHHHHHHhcCCC-EEEEeecC
Q 017203 264 K-IFIEYI-MLDGVNDEEQHAHQLGKLLETFQV-VVNLIPFN 302 (375)
Q Consensus 264 ~-v~i~~v-li~gvND~~e~~~~L~~~l~~~~~-~vnLip~n 302 (375)
. |.+.++ =+| .++.+++.+.++++..+++ .+.+.+|.
T Consensus 203 ~~v~~dli~GlP--gqt~e~~~~tl~~~~~l~p~~i~~y~l~ 242 (453)
T PRK13347 203 ESINFDLIYGLP--HQTVESFRETLDKVIALSPDRIAVFGYA 242 (453)
T ss_pred CcEEEeEEEeCC--CCCHHHHHHHHHHHHhcCCCEEEEeccc
Confidence 4 444332 224 4688999999999999986 46665553
No 100
>PRK14340 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=99.16 E-value=1.9e-09 Score=109.67 Aligned_cols=183 Identities=10% Similarity=0.188 Sum_probs=124.6
Q ss_pred ceEEEEeecCCCCCcCccccCCC-CCcccCCCHHHHHHHHHHhhhhCCcceEEEEeCCCcccC-----HHHHHHHHHHhh
Q 017203 116 RSTLCISSQVGCKMGCNFCATGT-MGFKSNLSSGEIVEQLVHASRLSNIRNVVFMGMGEPLNN-----YAALVEAVRIMT 189 (375)
Q Consensus 116 r~tl~vssq~GCnl~C~fC~~~~-~~~~r~lt~~ei~~qi~~~~~~~~i~~Ivf~GmGEPlln-----~~~l~~~i~~l~ 189 (375)
+...++.++.|||.+|.||..+. .|..+..++++|++++..... .++..|+|.| ...... ...+.++++.+.
T Consensus 148 ~~~a~l~isrGC~~~CsFC~ip~~rG~~rsr~~e~Vv~Ei~~l~~-~G~~ei~l~~-~~~~~y~d~~~~~~l~~Ll~~l~ 225 (445)
T PRK14340 148 SISAFVPVMRGCNNMCAFCVVPFTRGRERSHPFASVLDEVRALAE-AGYREITLLG-QNVNSYSDPEAGADFAGLLDAVS 225 (445)
T ss_pred CcEEEEEeccCCCCCCCCCCcccccCCCcCCCHHHHHHHHHHHHH-CCCeEEEEee-cccchhhccCCCchHHHHHHHHh
Confidence 45678888899999999998864 344578899999999988765 4678999988 443321 124667777776
Q ss_pred CCCCCCCCCeEEEEeC---Cchhh-HHHHhhhC-CCceEEEEecCCCHHHHhhhcCCCCCCCHHHHHHHHHHHHHhc--C
Q 017203 190 GLPFQVSPKRITVSTV---GIVHA-INKFHSDL-PGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNS--Q 262 (375)
Q Consensus 190 ~~g~~i~~~~itisTn---G~~~~-i~~l~~~~-~~v~laiSL~a~~~~~r~~i~p~~~~~~~~~vl~~l~~~~~~~--g 262 (375)
+.. +..++.+++. .+.+. ++.+++.. .-..+.+.+.+.+++.-+.+ +++++.+++.++++. +++. |
T Consensus 226 ~~~---~~~rir~~~~~p~~l~~ell~~~~~~~~g~~~l~iglQSgsd~vLk~m---~R~~t~~~~~~~v~~-lr~~~pg 298 (445)
T PRK14340 226 RAA---PEMRIRFTTSHPKDISESLVRTIAARPNICNHIHLPVQSGSSRMLRRM---NRGHTIEEYLEKIAL-IRSAIPG 298 (445)
T ss_pred hcC---CCcEEEEccCChhhcCHHHHHHHHhCCCCCCeEEECCCcCCHHHHHhc---CCCCCHHHHHHHHHH-HHHhCCC
Confidence 431 1145666542 22333 33444321 12468899999999887664 677899999999954 4555 5
Q ss_pred CcEEEEEEeeCCCCCCHHHHHHHHHHHhcCCC-EEEEeecCCCCCCCC
Q 017203 263 QKIFIEYIMLDGVNDEEQHAHQLGKLLETFQV-VVNLIPFNPIGSVSQ 309 (375)
Q Consensus 263 ~~v~i~~vli~gvND~~e~~~~L~~~l~~~~~-~vnLip~np~~~~~~ 309 (375)
..+...+ ++.-.++++++++++.+|++.++. .+++.+|.|. ++++
T Consensus 299 i~i~td~-IvGfPgET~edf~~tl~~~~~~~~~~~~~f~~sp~-pGT~ 344 (445)
T PRK14340 299 VTLSTDL-IAGFCGETEEDHRATLSLMEEVRFDSAFMFYYSVR-PGTL 344 (445)
T ss_pred CEEeccE-EEECCCCCHHHHHHHHHHHHhcCCCEEeeEEecCC-CCCh
Confidence 4443322 333356899999999999999975 4777788887 4554
No 101
>TIGR01578 MiaB-like-B MiaB-like tRNA modifying enzyme, archaeal-type. This clade is a member of a subfamily (TIGR00089) and spans the archaea and eukaryotes. The only archaeal miaB-like genes are in this clade, while eukaryotes have sequences described by this model as well as ones falling within the scope of the MiaB equivalog model.
Probab=99.16 E-value=4.5e-09 Score=106.27 Aligned_cols=184 Identities=14% Similarity=0.263 Sum_probs=119.9
Q ss_pred ceEEEEeecCCCCCcCccccCCCC-CcccCCCHHHHHHHHHHhhhhCCcceEEEEeCCCcccC----HHHHHHHHHHhhC
Q 017203 116 RSTLCISSQVGCKMGCNFCATGTM-GFKSNLSSGEIVEQLVHASRLSNIRNVVFMGMGEPLNN----YAALVEAVRIMTG 190 (375)
Q Consensus 116 r~tl~vssq~GCnl~C~fC~~~~~-~~~r~lt~~ei~~qi~~~~~~~~i~~Ivf~GmGEPlln----~~~l~~~i~~l~~ 190 (375)
+...++.+|.|||++|.||..+.. +..+..++++|++++....+ .++..|+|+| .+-... ...+.++++.+.+
T Consensus 132 ~~~~~i~isrGC~~~CsfC~ip~~~G~~rsr~~e~Vl~Ei~~l~~-~G~~ei~l~g-~d~~~yg~d~~~~l~~Ll~~l~~ 209 (420)
T TIGR01578 132 PLIEIIPINQGCLGNCSYCITKHARGKLASYPPEKIVEKARQLVA-EGCKEIWITS-QDTGAYGRDIGSRLPELLRLITE 209 (420)
T ss_pred CcEEEEEEccCCCCCCCCCccccCCCCcccCCHHHHHHHHHHHHH-CCCeEEEEEe-eccccccCCCCcCHHHHHHHHHh
Confidence 466788888999999999988643 34577899999999998765 3678999998 332210 1235566666654
Q ss_pred CCCCCCCCeEEEEeC--C-chhhHHHHhhhC--CC--ceEEEEecCCCHHHHhhhcCCCCCCCHHHHHHHHHHHHHhcCC
Q 017203 191 LPFQVSPKRITVSTV--G-IVHAINKFHSDL--PG--LNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQ 263 (375)
Q Consensus 191 ~g~~i~~~~itisTn--G-~~~~i~~l~~~~--~~--v~laiSL~a~~~~~r~~i~p~~~~~~~~~vl~~l~~~~~~~g~ 263 (375)
... ..++.+++. . +....+++.+.. +. ..+.+.+.+.+++..+.+ ++.++.+++.++++. +++...
T Consensus 210 i~~---~~~ir~~~~~p~~~~~~~~~l~~~~~~~~~~~~l~iglQSgsd~iL~~m---~R~~~~~~~~~~i~~-i~~~~~ 282 (420)
T TIGR01578 210 IPG---EFRLRVGMMNPKNVLEILDELANVYQHEKVYKFLHLPVQSGSDSVLKEM---KREYTVSDFEDIVDK-FRERFP 282 (420)
T ss_pred CCC---CcEEEEcCCCCCcccccCHHHHHHHhcccccCceEeCCccCCHHHHHhc---CCCCCHHHHHHHHHH-HHHhCC
Confidence 310 023444431 1 111112333221 12 257889999999887765 567889999999954 445433
Q ss_pred cEEEEEEeeCC-CCCCHHHHHHHHHHHhcCCC-EEEEeecCCCCCCCC
Q 017203 264 KIFIEYIMLDG-VNDEEQHAHQLGKLLETFQV-VVNLIPFNPIGSVSQ 309 (375)
Q Consensus 264 ~v~i~~vli~g-vND~~e~~~~L~~~l~~~~~-~vnLip~np~~~~~~ 309 (375)
.+.+..-+|-| .+++++++++.++|++.++. .+++.+|.|. ++++
T Consensus 283 ~i~i~~~~IvG~PgET~ed~~~t~~~~~~~~~~~i~~~~~~p~-pGT~ 329 (420)
T TIGR01578 283 DLTLSTDIIVGFPTETDDDFEETMELLRKYRPEKINITKFSPR-PGTP 329 (420)
T ss_pred CCEEEeeEEEeCCCCCHHHHHHHHHHHHHhCCCEEEEEEeeCC-CCCc
Confidence 34444433334 58899999999999999985 4888888887 4544
No 102
>PRK09249 coproporphyrinogen III oxidase; Provisional
Probab=99.15 E-value=1.1e-08 Score=104.32 Aligned_cols=199 Identities=10% Similarity=0.121 Sum_probs=130.6
Q ss_pred CCCCCcCccccCCCCCc-ccCC---CHHHHHHHHHHhhh----hCCcceEEEEeCCCccc-CHHHHHHHHHHhhCCCCCC
Q 017203 125 VGCKMGCNFCATGTMGF-KSNL---SSGEIVEQLVHASR----LSNIRNVVFMGMGEPLN-NYAALVEAVRIMTGLPFQV 195 (375)
Q Consensus 125 ~GCnl~C~fC~~~~~~~-~r~l---t~~ei~~qi~~~~~----~~~i~~Ivf~GmGEPll-n~~~l~~~i~~l~~~g~~i 195 (375)
.-|+.+|.||....... .... ..+.+++++..... ...+..|.|.| |+|++ +.+.+.++++.+++. +++
T Consensus 57 PFC~~~C~yC~~~~~~~~~~~~~~~y~~~L~~Ei~~~~~~~~~~~~v~~i~~gG-GtPs~l~~~~l~~ll~~l~~~-~~~ 134 (453)
T PRK09249 57 PFCRSLCYYCGCNKIITRDHEKADPYLDALEKEIALVAALLGPGRPVSQLHWGG-GTPTFLSPEQLRRLMALLREH-FNF 134 (453)
T ss_pred CCccccCCCCCCcccCCCCcchHHHHHHHHHHHHHHHHHHhCCCCceEEEEECC-cccccCCHHHHHHHHHHHHHh-CCC
Confidence 67999999997654311 1111 23455666654332 13578999999 99996 578899999999865 222
Q ss_pred C-CCeEEEEeCCch---hhHHHHhhhCCCceEEEEecCCCHHHHhhhcCCCCCCCHHHHHHHHHHHHHhcCC-cEEEEEE
Q 017203 196 S-PKRITVSTVGIV---HAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQ-KIFIEYI 270 (375)
Q Consensus 196 ~-~~~itisTnG~~---~~i~~l~~~~~~v~laiSL~a~~~~~r~~i~p~~~~~~~~~vl~~l~~~~~~~g~-~v~i~~v 270 (375)
. ...+++.||+.. ..+..|.+.+ ...|.|++.+.+++..+.+ ++..+.++++++++ .+++.|. .+.+.++
T Consensus 135 ~~~~e~tie~np~~lt~e~l~~l~~aG-~~risiGvqS~~~~~L~~l---~r~~~~~~~~~ai~-~l~~~G~~~v~~dli 209 (453)
T PRK09249 135 APDAEISIEIDPRELDLEMLDALRELG-FNRLSLGVQDFDPEVQKAV---NRIQPFEFTFALVE-AARELGFTSINIDLI 209 (453)
T ss_pred CCCCEEEEEecCCcCCHHHHHHHHHcC-CCEEEECCCCCCHHHHHHh---CCCCCHHHHHHHHH-HHHHcCCCcEEEEEE
Confidence 2 257999999843 2455666554 3578999999999988877 45678999999994 5667776 4544332
Q ss_pred eeCCCCCCHHHHHHHHHHHhcCCC-EEEEeecC--CCC--CC---CCCCCCcHHHHHHH----HHHHHhcCCce
Q 017203 271 MLDGVNDEEQHAHQLGKLLETFQV-VVNLIPFN--PIG--SV---SQFRTSSDDKVSSF----QKILRGSYNIR 332 (375)
Q Consensus 271 li~gvND~~e~~~~L~~~l~~~~~-~vnLip~n--p~~--~~---~~~~~~s~e~i~~f----~~~l~~~~Gi~ 332 (375)
+.-.+++.+++.+.++++..+++ ++.+.++. |.. .. .....|+.++..++ .+.|. ..|+.
T Consensus 210 -~GlPgqt~e~~~~~l~~~~~l~~~~i~~y~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~-~~Gy~ 281 (453)
T PRK09249 210 -YGLPKQTPESFARTLEKVLELRPDRLAVFNYAHVPWLFKAQRKIDEADLPSPEEKLAILQQTIETLT-EAGYQ 281 (453)
T ss_pred -ccCCCCCHHHHHHHHHHHHhcCCCEEEEccCccchhhhhHhcCCCcccCCCHHHHHHHHHHHHHHHH-HCCCE
Confidence 22245788999999999999886 47776665 221 00 12234566554444 44555 56764
No 103
>PRK14330 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=99.15 E-value=6e-09 Score=105.76 Aligned_cols=184 Identities=16% Similarity=0.294 Sum_probs=120.1
Q ss_pred ceEEEEeecCCCCCcCccccCCCC-CcccCCCHHHHHHHHHHhhhhCCcceEEEEe-----CCCcccCHHHHHHHHHHhh
Q 017203 116 RSTLCISSQVGCKMGCNFCATGTM-GFKSNLSSGEIVEQLVHASRLSNIRNVVFMG-----MGEPLNNYAALVEAVRIMT 189 (375)
Q Consensus 116 r~tl~vssq~GCnl~C~fC~~~~~-~~~r~lt~~ei~~qi~~~~~~~~i~~Ivf~G-----mGEPlln~~~l~~~i~~l~ 189 (375)
+...++..|.|||.+|.||..+.. |..+..++++|++++..... .++..|+|.| .|-.+.+...+.++++.+.
T Consensus 139 ~~~~~v~i~rGC~~~CsFC~ip~~~G~~rsr~~e~Iv~Ei~~l~~-~g~kei~l~~~n~~~yg~~~~~~~~l~~Ll~~~~ 217 (434)
T PRK14330 139 KHHAWVTIIYGCNRFCTYCIVPYTRGREKSRPMEDILEEVEKLAK-QGYREVTFLGQNVDAYGKDLKDGSSLAKLLEEAS 217 (434)
T ss_pred CcEEEEEcccCCCCCCCCCceECcCCCCccCCHHHHHHHHHHHHH-CCCcEEEEEEecccccccCCCCCccHHHHHHHHH
Confidence 345667778999999999987533 33477899999999988665 3677888876 1222323335666676665
Q ss_pred CC-CCCCCCCeEEEEe---CCchhhHHHHhhhCCC--ceEEEEecCCCHHHHhhhcCCCCCCCHHHHHHHHHHHHHhcCC
Q 017203 190 GL-PFQVSPKRITVST---VGIVHAINKFHSDLPG--LNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQ 263 (375)
Q Consensus 190 ~~-g~~i~~~~itisT---nG~~~~i~~l~~~~~~--v~laiSL~a~~~~~r~~i~p~~~~~~~~~vl~~l~~~~~~~g~ 263 (375)
+. ++ .++.+.+ ..+.+.+.++....+. ..+.|.+.+.+++.-+.+ +++++.+++.++++.+ ++...
T Consensus 218 ~~~~~----~~~~~~~~~p~~~~~ell~~l~~~~~~~~~l~iglQSgsd~vLk~M---~R~~~~~~~~~~i~~l-r~~~~ 289 (434)
T PRK14330 218 KIEGI----ERIWFLTSYPTDFSDELIEVIANSPKVAKSIHLPVQSGSNRILKLM---NRRYTREEYLELIEKI-RSKVP 289 (434)
T ss_pred hcCCc----eEEEEecCChhhcCHHHHHHHhcCCcccCceecCcCCCCHHHHHhc---CCCCCHHHHHHHHHHH-HHhCC
Confidence 43 42 1233222 2223333333333322 257889999999887654 5678899999999654 44423
Q ss_pred cEEEEE-EeeCCCCCCHHHHHHHHHHHhcCCC-EEEEeecCCCCCCCC
Q 017203 264 KIFIEY-IMLDGVNDEEQHAHQLGKLLETFQV-VVNLIPFNPIGSVSQ 309 (375)
Q Consensus 264 ~v~i~~-vli~gvND~~e~~~~L~~~l~~~~~-~vnLip~np~~~~~~ 309 (375)
.+.+.. +++...++++++++++++|+..++. .+++.+|.|. ++++
T Consensus 290 ~i~i~~d~IvGfPgET~edf~~tl~fi~~~~~~~~~~~~~sp~-pGT~ 336 (434)
T PRK14330 290 DASISSDIIVGFPTETEEDFMETVDLVEKAQFERLNLAIYSPR-EGTV 336 (434)
T ss_pred CCEEEEEEEEECCCCCHHHHHHHHHHHHhcCCCEEeeeeccCC-CCCh
Confidence 333333 3444467899999999999999986 4788888887 4544
No 104
>TIGR01574 miaB-methiolase tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB. Hits to this model span all major groups of bacteria and eukaryotes, but not archaea, which are known to lack this particular tRNA modification. The enzyme from Thermotoga maritima has been cloned, expressed, spectroscopically characterized and shown to complement the E. coli MiaB enzyme.
Probab=99.14 E-value=5e-09 Score=106.49 Aligned_cols=184 Identities=13% Similarity=0.251 Sum_probs=123.7
Q ss_pred CceEEEEeecCCCCCcCccccCCCC-CcccCCCHHHHHHHHHHhhhhCCcceEEEEeCCCcccC--------HHHHHHHH
Q 017203 115 PRSTLCISSQVGCKMGCNFCATGTM-GFKSNLSSGEIVEQLVHASRLSNIRNVVFMGMGEPLNN--------YAALVEAV 185 (375)
Q Consensus 115 ~r~tl~vssq~GCnl~C~fC~~~~~-~~~r~lt~~ei~~qi~~~~~~~~i~~Ivf~GmGEPlln--------~~~l~~~i 185 (375)
.+...++..|.|||.+|.||..+.. +..+..++++|++++..... .++..|+|+| ...... ...+.+++
T Consensus 143 ~~~~~~v~i~rGC~~~CsfC~~~~~~G~~rsr~~e~I~~Ei~~l~~-~g~~ei~l~~-~~~~~y~g~d~~~~~~~l~~Ll 220 (438)
T TIGR01574 143 GIYKSFINIMIGCNKFCTYCIVPYTRGDEISRPFDDILQEVQKLAE-KGVREITLLG-QNVNAYRGKDFEGKTMDFSDLL 220 (438)
T ss_pred CceeEEeehhcCCCCCCCCCCeeeecCCCcccCHHHHHHHHHHHHH-cCCeEEEEEe-cccCCccCCCCCCCcccHHHHH
Confidence 3466788888999999999987542 34477899999999988665 4678899988 333321 12467777
Q ss_pred HHhhCC-CCCCCCCeEEEEeC---Cchhh-HHHHhhhCC-CceEEEEecCCCHHHHhhhcCCCCCCCHHHHHHHHHHHHH
Q 017203 186 RIMTGL-PFQVSPKRITVSTV---GIVHA-INKFHSDLP-GLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQK 259 (375)
Q Consensus 186 ~~l~~~-g~~i~~~~itisTn---G~~~~-i~~l~~~~~-~v~laiSL~a~~~~~r~~i~p~~~~~~~~~vl~~l~~~~~ 259 (375)
+.+.+. ++ .++.+++. .+.+. ++.+++... ...+.+.+.+.+++.-+. | +++++.++++++++.+ +
T Consensus 221 ~~l~~~~~~----~~ir~~~~~p~~l~~ell~~l~~~g~~~~~l~iglQSgsd~vLk~-m--~R~~t~~~~~~~v~~i-r 292 (438)
T TIGR01574 221 RELSTIDGI----ERIRFTSSHPLDFDDDLIEVFANNPKLCKSMHLPVQSGSSEILKL-M--KRGYTREWYLNLVRKL-R 292 (438)
T ss_pred HHHHhcCCc----eEEEEecCCcccCCHHHHHHHHhCCCccCceeeCCCcCCHHHHHh-c--CCCCCHHHHHHHHHHH-H
Confidence 777653 42 34554431 12232 344444321 235778899999888766 3 5678999999999654 4
Q ss_pred hcCCcEEEEEEeeCC-CCCCHHHHHHHHHHHhcCCC-EEEEeecCCCCCCCC
Q 017203 260 NSQQKIFIEYIMLDG-VNDEEQHAHQLGKLLETFQV-VVNLIPFNPIGSVSQ 309 (375)
Q Consensus 260 ~~g~~v~i~~vli~g-vND~~e~~~~L~~~l~~~~~-~vnLip~np~~~~~~ 309 (375)
+....+.+..-+|-| ..++++++++.++++..++. .+++.+|.|. ++++
T Consensus 293 ~~~~~i~i~~d~IvG~PgEt~ed~~~tl~~i~~~~~~~~~~~~~sp~-pGT~ 343 (438)
T TIGR01574 293 AACPNVSISTDIIVGFPGETEEDFEETLDLLREVEFDSAFSFIYSPR-PGTP 343 (438)
T ss_pred HhCCCCeEeeCEEEeCCCCCHHHHHHHHHHHHhcCCCeeeeEEecCC-CCCc
Confidence 443344444433334 47899999999999999975 5777788876 4443
No 105
>PRK08446 coproporphyrinogen III oxidase; Provisional
Probab=99.14 E-value=9.5e-09 Score=101.45 Aligned_cols=197 Identities=14% Similarity=0.178 Sum_probs=129.4
Q ss_pred CCCCCcCccccCCCCCcccCC---CHHHHHHHHHHhhh---hCCcceEEEEeCCCcc-cCHHHHHHHHHHhhCCCCCCCC
Q 017203 125 VGCKMGCNFCATGTMGFKSNL---SSGEIVEQLVHASR---LSNIRNVVFMGMGEPL-NNYAALVEAVRIMTGLPFQVSP 197 (375)
Q Consensus 125 ~GCnl~C~fC~~~~~~~~r~l---t~~ei~~qi~~~~~---~~~i~~Ivf~GmGEPl-ln~~~l~~~i~~l~~~g~~i~~ 197 (375)
.=|+.+|.||........+.+ ..+.+++++..... ..++..|.|.| |+|+ ++++.+.++++.+++. +. ..
T Consensus 8 PFC~~~C~yC~f~~~~~~~~~~~~y~~~L~~Ei~~~~~~~~~~~v~~iyfGG-GTPs~l~~~~l~~ll~~i~~~-~~-~~ 84 (350)
T PRK08446 8 PFCESKCGYCAFNSYENKHDLKKEYMQALCLDLKFELEQFTDEKIESVFIGG-GTPSTVSAKFYEPIFEIISPY-LS-KD 84 (350)
T ss_pred CCccCcCCCCCCcCcCCCcccHHHHHHHHHHHHHHHHhhccCCceeEEEECC-CccccCCHHHHHHHHHHHHHh-cC-CC
Confidence 569999999986543211122 23555666654321 12578899999 9996 6777788888877654 21 11
Q ss_pred CeEEEEeCCch---hhHHHHhhhCCCceEEEEecCCCHHHHhhhcCCCCCCCHHHHHHHHHHHHHhcCCc-EEEEEEeeC
Q 017203 198 KRITVSTVGIV---HAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQK-IFIEYIMLD 273 (375)
Q Consensus 198 ~~itisTnG~~---~~i~~l~~~~~~v~laiSL~a~~~~~r~~i~p~~~~~~~~~vl~~l~~~~~~~g~~-v~i~~vli~ 273 (375)
..+++.+|... ..++.|.+.+ ...+.|++.+.+++..+.+ ++..+.+++.++++ .+++.|.. |.+.. +..
T Consensus 85 ~eitiE~nP~~~~~e~l~~l~~~G-vnRiSiGvQS~~~~~L~~l---gR~~~~~~~~~ai~-~lr~~g~~~v~iDl-i~G 158 (350)
T PRK08446 85 CEITTEANPNSATKAWLKGMKNLG-VNRISFGVQSFNEDKLKFL---GRIHSQKQIIKAIE-NAKKAGFENISIDL-IYD 158 (350)
T ss_pred ceEEEEeCCCCCCHHHHHHHHHcC-CCEEEEecccCCHHHHHHc---CCCCCHHHHHHHHH-HHHHcCCCEEEEEe-ecC
Confidence 56999998842 2455555554 3578999999999887776 55678999999994 56677764 44433 221
Q ss_pred CCCCCHHHHHHHHHHHhcCCC-EEEEeecCCCCCCCCC------CCCcHHHHHHHHHHHHhcCCce
Q 017203 274 GVNDEEQHAHQLGKLLETFQV-VVNLIPFNPIGSVSQF------RTSSDDKVSSFQKILRGSYNIR 332 (375)
Q Consensus 274 gvND~~e~~~~L~~~l~~~~~-~vnLip~np~~~~~~~------~~~s~e~i~~f~~~l~~~~Gi~ 332 (375)
-.+.+.+++.+.++++..+++ ++.+-++.+. +++++ .++..+....+.+.|. +.|..
T Consensus 159 lPgqt~~~~~~~l~~~~~l~~~~is~y~L~~~-~gT~l~~~~~~~~~~~~~~~~~~~~l~-~~Gy~ 222 (350)
T PRK08446 159 TPLDNKKLLKEELKLAKELPINHLSAYSLTIE-ENTPFFEKNHKKKDDENLAKFFIEQLE-ELGFK 222 (350)
T ss_pred CCCCCHHHHHHHHHHHHhcCCCEEEeccceec-CCChhHHhhhcCCCHHHHHHHHHHHHH-HCCCc
Confidence 134678999999999998876 4766666665 33332 1233455566677787 67764
No 106
>PRK14337 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=99.14 E-value=8.9e-09 Score=104.85 Aligned_cols=180 Identities=12% Similarity=0.236 Sum_probs=122.7
Q ss_pred CceEEEEeecCCCCCcCccccCCCC-CcccCCCHHHHHHHHHHhhhhCCcceEEEEeCCCccc-------CHHHHHHHHH
Q 017203 115 PRSTLCISSQVGCKMGCNFCATGTM-GFKSNLSSGEIVEQLVHASRLSNIRNVVFMGMGEPLN-------NYAALVEAVR 186 (375)
Q Consensus 115 ~r~tl~vssq~GCnl~C~fC~~~~~-~~~r~lt~~ei~~qi~~~~~~~~i~~Ivf~GmGEPll-------n~~~l~~~i~ 186 (375)
.+...++..|.|||.+|.||..+.. +..+..++++|++++..... .++..|+|+| ..-.. +...+.++++
T Consensus 146 ~~~~a~v~i~rGC~~~CsFC~ip~~rG~~rsr~~e~Iv~Ei~~l~~-~G~~eI~l~~-~~~~~yg~d~~~~~~~l~~Ll~ 223 (446)
T PRK14337 146 VPASAFVNIMQGCDNFCAYCIVPYTRGRQKSRSSAAVLDECRALVD-RGAREITLLG-QNVNSYGQDKHGDGTSFAQLLH 223 (446)
T ss_pred CCcEEEEEeccCCCCCCcCCCcccCCCCCeeCCHHHHHHHHHHHHH-CCCeEEEEEe-cCccccccCCCCCCccHHHHHH
Confidence 3566788888999999999988643 44578899999999998765 3678899988 32211 0124666777
Q ss_pred HhhCC-CCCCCCCeEEEEe---CCchhhH-HHHhhhC-CCceEEEEecCCCHHHHhhhcCCCCCCCHHHHHHHHHHHHHh
Q 017203 187 IMTGL-PFQVSPKRITVST---VGIVHAI-NKFHSDL-PGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKN 260 (375)
Q Consensus 187 ~l~~~-g~~i~~~~itisT---nG~~~~i-~~l~~~~-~~v~laiSL~a~~~~~r~~i~p~~~~~~~~~vl~~l~~~~~~ 260 (375)
.+.+. |+ .++.+++ +.+.+.+ ..+++.. ....+.+.+.+.+++..+.+ +++++.+++.++++.+ ++
T Consensus 224 ~l~~~~g~----~~ir~~~~~p~~i~~ell~~l~~~~~~~~~l~iglQSgsd~vLk~M---~R~~t~e~~~~~v~~l-r~ 295 (446)
T PRK14337 224 KVAALPGL----ERLRFTTPHPKDIAPEVIEAFGELPNLCPRLHLPLQSGSDRILKAM---GRKYDMARYLDIVTDL-RA 295 (446)
T ss_pred HHHhcCCC----cEEEEccCCcccCCHHHHHHHHhCCcccCeEEECCCCCCHHHHHhC---CCCCCHHHHHHHHHHH-HH
Confidence 76654 42 2455543 2233333 3344321 12368888999998887764 5678999999999654 44
Q ss_pred cCCcEEEEEEeeCC-CCCCHHHHHHHHHHHhcCCC-EEEEeecCCC
Q 017203 261 SQQKIFIEYIMLDG-VNDEEQHAHQLGKLLETFQV-VVNLIPFNPI 304 (375)
Q Consensus 261 ~g~~v~i~~vli~g-vND~~e~~~~L~~~l~~~~~-~vnLip~np~ 304 (375)
....+.+..-+|-| .+++.++++++.+|+..++. .+++.+|.|.
T Consensus 296 ~~~~i~i~~d~IvG~PgET~ed~~~tl~~l~~~~~~~~~~f~ysp~ 341 (446)
T PRK14337 296 ARPDIALTTDLIVGFPGETEEDFEQTLEAMRTVGFASSFSFCYSDR 341 (446)
T ss_pred hCCCCeEEEeEEEECCCCCHHHHHHHHHHHHhcCCCeeEEEecCCC
Confidence 43345554444434 57899999999999999985 4777788877
No 107
>PLN02428 lipoic acid synthase
Probab=99.13 E-value=1.3e-08 Score=99.59 Aligned_cols=213 Identities=16% Similarity=0.166 Sum_probs=138.4
Q ss_pred ceEEEEeecCCCCCcCccccCCCCCcccCCCHHHHHHHHHHhhhhCCcceEEEEeCCC----cccCHHHHHHHHHHhhCC
Q 017203 116 RSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSNIRNVVFMGMGE----PLNNYAALVEAVRIMTGL 191 (375)
Q Consensus 116 r~tl~vssq~GCnl~C~fC~~~~~~~~r~lt~~ei~~qi~~~~~~~~i~~Ivf~GmGE----Plln~~~l~~~i~~l~~~ 191 (375)
..|+.+. ..||+.+|.||+-+.......+.++|+.+.+..+.. .+++.|+|+| |. |-...+.+.++++.+++.
T Consensus 102 taT~mil-g~gCtr~CrFCav~~~~~p~~~d~~Ep~~vA~~v~~-~Glk~vvltS-g~rddl~D~ga~~~~elir~Ir~~ 178 (349)
T PLN02428 102 TATIMIL-GDTCTRGCRFCAVKTSRTPPPPDPDEPENVAEAIAS-WGVDYVVLTS-VDRDDLPDGGSGHFAETVRRLKQL 178 (349)
T ss_pred eEEEEEe-cCCCCCCCCCCcCCCCCCCCCCChhhHHHHHHHHHH-cCCCEEEEEE-cCCCCCCcccHHHHHHHHHHHHHh
Confidence 4566554 389999999999865322334567777776666554 4678899999 74 444456788889999875
Q ss_pred CCCCCCCeEEEEeCCch---hhHHHHhhhCCCceEEEEecCCCHHHHhhhcCCCCCCCHHHHHHHHHHHHHhc--CCcEE
Q 017203 192 PFQVSPKRITVSTVGIV---HAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNS--QQKIF 266 (375)
Q Consensus 192 g~~i~~~~itisTnG~~---~~i~~l~~~~~~v~laiSL~a~~~~~r~~i~p~~~~~~~~~vl~~l~~~~~~~--g~~v~ 266 (375)
. +..++.+.|-++. ..+..|++.++ ..+...+++ .+..|..+-+ ++.+.++.++.++. +++. |..
T Consensus 179 ~---P~i~Ie~L~pdf~~d~elL~~L~eAG~-d~i~hnlET-v~rL~~~Ir~--~~~sye~~Le~L~~-ak~~~pGi~-- 248 (349)
T PLN02428 179 K---PEILVEALVPDFRGDLGAVETVATSGL-DVFAHNIET-VERLQRIVRD--PRAGYKQSLDVLKH-AKESKPGLL-- 248 (349)
T ss_pred C---CCcEEEEeCccccCCHHHHHHHHHcCC-CEEccCccC-cHHHHHHhcC--CCCCHHHHHHHHHH-HHHhCCCCe--
Confidence 3 1256777666543 24677777664 346666775 4567777742 24578999999954 4555 443
Q ss_pred EEEEeeCCCCCCHHHHHHHHHHHhcCCCEE-EEeec-CCCCCCCC-CCCCcHHHHHHHHHHHHhcCCce-E----EeccC
Q 017203 267 IEYIMLDGVNDEEQHAHQLGKLLETFQVVV-NLIPF-NPIGSVSQ-FRTSSDDKVSSFQKILRGSYNIR-T----TVRKQ 338 (375)
Q Consensus 267 i~~vli~gvND~~e~~~~L~~~l~~~~~~v-nLip~-np~~~~~~-~~~~s~e~i~~f~~~l~~~~Gi~-v----~vR~~ 338 (375)
+..-+|=|+.++++++.+++++++++++.+ .+-+| .|.....+ .+...+++.+.++++.. +.|+. | .||.|
T Consensus 249 tkSg~MvGLGET~Edv~e~l~~Lrelgvd~vtigqyL~Ps~~h~~v~~~v~p~~f~~~~~~~~-~~gf~~v~sgp~vrss 327 (349)
T PLN02428 249 TKTSIMLGLGETDEEVVQTMEDLRAAGVDVVTFGQYLRPTKRHLPVKEYVTPEKFEFWREYGE-EMGFRYVASGPLVRSS 327 (349)
T ss_pred EEEeEEEecCCCHHHHHHHHHHHHHcCCCEEeeccccCCCcceeeeecccCHHHHHHHHHHHH-HcCCceEEecCcccch
Confidence 333333377899999999999999999864 33355 44321011 12345688899999888 68885 3 35655
Q ss_pred CCcc
Q 017203 339 MGQD 342 (375)
Q Consensus 339 ~g~d 342 (375)
.-.+
T Consensus 328 y~a~ 331 (349)
T PLN02428 328 YKAG 331 (349)
T ss_pred hhhH
Confidence 4433
No 108
>TIGR00538 hemN oxygen-independent coproporphyrinogen III oxidase. This model represents HemN, the oxygen-independent coproporphyrinogen III oxidase that replaces HemF function under anaerobic conditions. Several species, including E. coli, Helicobacter pylori, and Aquifex aeolicus, have both a member of this family and a member of another, closely related family for which there is no evidence of coproporphyrinogen III oxidase activity. Members of this family have a perfectly conserved motif PYRT[SC]YP in a region N-terminal to the region of homology with the related uncharacterized protein.
Probab=99.13 E-value=1.4e-08 Score=103.66 Aligned_cols=169 Identities=12% Similarity=0.228 Sum_probs=118.0
Q ss_pred CCCCCcCccccCCCCCc-ccCC---CHHHHHHHHHHhhhh----CCcceEEEEeCCCccc-CHHHHHHHHHHhhCC-CCC
Q 017203 125 VGCKMGCNFCATGTMGF-KSNL---SSGEIVEQLVHASRL----SNIRNVVFMGMGEPLN-NYAALVEAVRIMTGL-PFQ 194 (375)
Q Consensus 125 ~GCnl~C~fC~~~~~~~-~r~l---t~~ei~~qi~~~~~~----~~i~~Ivf~GmGEPll-n~~~l~~~i~~l~~~-g~~ 194 (375)
.-|+.+|.||....... .... ..+.+++++...... .++..|.|.| |+|++ +++.+.++++.+++. .+.
T Consensus 57 PFC~~~C~yC~~~~~~~~~~~~~~~y~~~L~~Ei~~~~~~~~~~~~v~~I~fgG-GtP~~l~~~~l~~ll~~i~~~~~~~ 135 (455)
T TIGR00538 57 PFCHKACYFCGCNVIITRQKHKADPYLDALEKEIALVAPLFDGNRHVSQLHWGG-GTPTYLSPEQISRLMKLIRENFPFN 135 (455)
T ss_pred CCccCcCCCCCCCccCCCCcchHHHHHHHHHHHHHHHHHhcCCCCceEEEEECC-CCcCCCCHHHHHHHHHHHHHhCCCC
Confidence 77999999998764321 1111 245666666654221 3678899999 99985 788999999999875 211
Q ss_pred CCCCeEEEEeCCch--h-hHHHHhhhCCCceEEEEecCCCHHHHhhhcCCCCCCCHHHHHHHHHHHHHhcCCc-EEEEEE
Q 017203 195 VSPKRITVSTVGIV--H-AINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQK-IFIEYI 270 (375)
Q Consensus 195 i~~~~itisTnG~~--~-~i~~l~~~~~~v~laiSL~a~~~~~r~~i~p~~~~~~~~~vl~~l~~~~~~~g~~-v~i~~v 270 (375)
....+++.||+.. + .++.|.+.+ ...+.|++.+.+++..+.+ ++..+.+++.+++ +.+++.|.. +.+.++
T Consensus 136 -~~~eitie~np~~l~~e~l~~lk~~G-~~risiGvqS~~~~~l~~l---~r~~~~~~~~~ai-~~l~~~G~~~v~~dli 209 (455)
T TIGR00538 136 -ADAEISIEIDPRYITKDVIDALRDEG-FNRLSFGVQDFNKEVQQAV---NRIQPEEMIFELM-NHAREAGFTSINIDLI 209 (455)
T ss_pred -CCCeEEEEeccCcCCHHHHHHHHHcC-CCEEEEcCCCCCHHHHHHh---CCCCCHHHHHHHH-HHHHhcCCCcEEEeEE
Confidence 1246899998843 2 455666654 3578999999999998877 4557889999999 456777764 444332
Q ss_pred eeCCCCCCHHHHHHHHHHHhcCCC-EEEEeec
Q 017203 271 MLDGVNDEEQHAHQLGKLLETFQV-VVNLIPF 301 (375)
Q Consensus 271 li~gvND~~e~~~~L~~~l~~~~~-~vnLip~ 301 (375)
..-.+++.+++.+.++++..+++ ++.+.++
T Consensus 210 -~GlPgqt~e~~~~tl~~~~~l~~~~is~y~L 240 (455)
T TIGR00538 210 -YGLPKQTKESFAKTLEKVAELNPDRLAVFNY 240 (455)
T ss_pred -eeCCCCCHHHHHHHHHHHHhcCCCEEEEecC
Confidence 22234788999999999999986 4666655
No 109
>PRK14329 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=99.12 E-value=3.1e-09 Score=108.75 Aligned_cols=185 Identities=11% Similarity=0.150 Sum_probs=122.2
Q ss_pred ceEEEEeecCCCCCcCccccCCCC-CcccCCCHHHHHHHHHHhhhhCCcceEEEEeCC---------Ccc-cCHHHHHHH
Q 017203 116 RSTLCISSQVGCKMGCNFCATGTM-GFKSNLSSGEIVEQLVHASRLSNIRNVVFMGMG---------EPL-NNYAALVEA 184 (375)
Q Consensus 116 r~tl~vssq~GCnl~C~fC~~~~~-~~~r~lt~~ei~~qi~~~~~~~~i~~Ivf~GmG---------EPl-ln~~~l~~~ 184 (375)
+...++.++.|||++|.||..+.. +..+..++++|++++...... ++..|+|.|.. .|. .+...+.++
T Consensus 167 ~~~a~i~isrGCp~~CsFC~ip~~~G~~rsrs~e~Vv~Ei~~l~~~-g~~eI~l~~~~~~~y~~d~~~~~~~~~~~l~~L 245 (467)
T PRK14329 167 GVSAFVSIMRGCDNMCTFCVVPFTRGRERSRDPESILNEVRDLFAK-GYKEVTLLGQNVDSYLWYGGGLKKDEAVNFAQL 245 (467)
T ss_pred CcEEEEEeccCcccCCCCCccccccCCcccCCHHHHHHHHHHHHHC-CCeEEEEEeecccccccccCCccccccccHHHH
Confidence 456788888999999999987543 345788999999999887653 57788887621 110 011246677
Q ss_pred HHHhhCCCCCCCCCeEEEEe---CCchhhH-HHHhhhC-CCceEEEEecCCCHHHHhhhcCCCCCCCHHHHHHHHHHHHH
Q 017203 185 VRIMTGLPFQVSPKRITVST---VGIVHAI-NKFHSDL-PGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQK 259 (375)
Q Consensus 185 i~~l~~~g~~i~~~~itisT---nG~~~~i-~~l~~~~-~~v~laiSL~a~~~~~r~~i~p~~~~~~~~~vl~~l~~~~~ 259 (375)
++.+.+.. +..++.+++ +.+.+.+ ..+++.. .-..+.+.+.+.+++..+.+ +++++.+++.++++. ++
T Consensus 246 l~~l~~~~---~~~~ir~~~~~p~~l~~ell~~m~~~~~g~~~i~iglQSgsd~vLk~m---~R~~t~~~~~~~i~~-ir 318 (467)
T PRK14329 246 LEMVAEAV---PDMRIRFSTSHPKDMTDDVLEVMAKYDNICKHIHLPVQSGSDRILKLM---NRKYTREWYLDRIDA-IR 318 (467)
T ss_pred HHHHHhcC---CCcEEEEecCCcccCCHHHHHHHHhCCCCCCeEEeCCCcCCHHHHHhc---CCCCCHHHHHHHHHH-HH
Confidence 77765431 113566665 2233333 3343331 22468899999999887765 677888998888854 44
Q ss_pred hcCCcEEEEEE-eeCCCCCCHHHHHHHHHHHhcCCC-EEEEeecCCCCCCCC
Q 017203 260 NSQQKIFIEYI-MLDGVNDEEQHAHQLGKLLETFQV-VVNLIPFNPIGSVSQ 309 (375)
Q Consensus 260 ~~g~~v~i~~v-li~gvND~~e~~~~L~~~l~~~~~-~vnLip~np~~~~~~ 309 (375)
+.+..+.+..- ++.-.+++++++++..+|+..++. .+++.+|.|. ++++
T Consensus 319 ~~~~~~~i~~d~IvGfPgET~edf~~tl~~i~~l~~~~~~v~~~sp~-pGT~ 369 (467)
T PRK14329 319 RIIPDCGISTDMIAGFPTETEEDHQDTLSLMEEVGYDFAFMFKYSER-PGTY 369 (467)
T ss_pred HhCCCCEEEEeEEEeCCCCCHHHHHHHHHHHHhhCCCeEeeeEecCC-CCCh
Confidence 44333444433 343367899999999999999975 4777788877 4443
No 110
>PRK08599 coproporphyrinogen III oxidase; Provisional
Probab=99.12 E-value=1.1e-08 Score=101.89 Aligned_cols=177 Identities=10% Similarity=0.119 Sum_probs=120.3
Q ss_pred eEEEEeecCCCCCcCccccCCCCCcc---cCCCHHHHHHHHHHhhhh--CCcceEEEEeCCCcc-cCHHHHHHHHHHhhC
Q 017203 117 STLCISSQVGCKMGCNFCATGTMGFK---SNLSSGEIVEQLVHASRL--SNIRNVVFMGMGEPL-NNYAALVEAVRIMTG 190 (375)
Q Consensus 117 ~tl~vssq~GCnl~C~fC~~~~~~~~---r~lt~~ei~~qi~~~~~~--~~i~~Ivf~GmGEPl-ln~~~l~~~i~~l~~ 190 (375)
..+.| .-|+.+|.||.-...... ..-.++.+++++...... ..+..|.|.| |+|+ ++.+.+.++++.+++
T Consensus 4 lYihi---PfC~~~C~yC~~~~~~~~~~~~~~y~~~l~~Ei~~~~~~~~~~i~~i~~gG-Gtpt~l~~~~l~~ll~~i~~ 79 (377)
T PRK08599 4 AYIHI---PFCEHICYYCDFNKVFIKNQPVDEYLDALIKEMNTYAIRPFDKLKTIYIGG-GTPTALSAEQLERLLTAIHR 79 (377)
T ss_pred EEEEe---CCcCCCCCCCCCeeeccCccCHHHHHHHHHHHHHHhhhcCCCceeEEEeCC-CCcccCCHHHHHHHHHHHHH
Confidence 34455 569999999985432111 112355667777543322 2577888888 9999 577889999999987
Q ss_pred CCCCCCC-CeEEEEeCCc--hh-hHHHHhhhCCCceEEEEecCCCHHHHhhhcCCCCCCCHHHHHHHHHHHHHhcCCc-E
Q 017203 191 LPFQVSP-KRITVSTVGI--VH-AINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQK-I 265 (375)
Q Consensus 191 ~g~~i~~-~~itisTnG~--~~-~i~~l~~~~~~v~laiSL~a~~~~~r~~i~p~~~~~~~~~vl~~l~~~~~~~g~~-v 265 (375)
. +++.. ..+++.+|.- .+ .++.|.+.+ ...+.|++.+.+++..+.+ ++..+.+++.+++ +.+++.|.. +
T Consensus 80 ~-~~~~~~~eit~e~~p~~l~~e~l~~l~~~G-~~rvsiGvqS~~~~~l~~l---~r~~~~~~~~~~i-~~l~~~g~~~v 153 (377)
T PRK08599 80 N-LPLSGLEEFTFEANPGDLTKEKLQVLKDSG-VNRISLGVQTFNDELLKKI---GRTHNEEDVYEAI-ANAKKAGFDNI 153 (377)
T ss_pred h-CCCCCCCEEEEEeCCCCCCHHHHHHHHHcC-CCEEEEecccCCHHHHHHc---CCCCCHHHHHHHH-HHHHHcCCCcE
Confidence 5 22222 4789999873 22 455666554 3578999999999998877 4567899999999 456677765 4
Q ss_pred EEEEEeeCCCCCCHHHHHHHHHHHhcCCC-EEEEeecCCC
Q 017203 266 FIEYIMLDGVNDEEQHAHQLGKLLETFQV-VVNLIPFNPI 304 (375)
Q Consensus 266 ~i~~vli~gvND~~e~~~~L~~~l~~~~~-~vnLip~np~ 304 (375)
.+. +++.-.+++.+++.+.++++..+++ ++.+-++.|.
T Consensus 154 ~~d-li~GlPgqt~~~~~~~l~~~~~l~~~~i~~y~l~~~ 192 (377)
T PRK08599 154 SID-LIYALPGQTIEDFKESLAKALALDIPHYSAYSLILE 192 (377)
T ss_pred EEe-eecCCCCCCHHHHHHHHHHHHccCCCEEeeeceeec
Confidence 442 2333346789999999999998875 3555554443
No 111
>PRK14335 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=99.09 E-value=6e-09 Score=106.35 Aligned_cols=184 Identities=13% Similarity=0.209 Sum_probs=120.4
Q ss_pred ceEEEEeecCCCCCcCccccCCCC-CcccCCCHHHHHHHHHHhhhhCCcceEEEEeCCCcccC--------HHHHHHHHH
Q 017203 116 RSTLCISSQVGCKMGCNFCATGTM-GFKSNLSSGEIVEQLVHASRLSNIRNVVFMGMGEPLNN--------YAALVEAVR 186 (375)
Q Consensus 116 r~tl~vssq~GCnl~C~fC~~~~~-~~~r~lt~~ei~~qi~~~~~~~~i~~Ivf~GmGEPlln--------~~~l~~~i~ 186 (375)
+...++..|.|||++|.||..+.. |..+..++++|++++..... .++..|+|.| ...... ...+.++++
T Consensus 151 ~~~~~i~I~rGC~~~CsfC~~p~~rG~~rsr~~e~Vv~Ei~~l~~-~G~~ei~l~g-~~~~~y~~~~~~~~~~~~~~Ll~ 228 (455)
T PRK14335 151 SFQSFIPIMNGCNNFCSYCIVPYVRGREISRDLDAILQEIDVLSE-KGVREITLLG-QNVNSYRGRDREGNIVTFPQLLR 228 (455)
T ss_pred CceEEEEhhcCCCCCCCCCCcccCCCCCccCCHHHHHHHHHHHHH-CCCeEEEEEe-ecccccccccccCCccCHHHHHH
Confidence 355677778999999999998643 34467789999999988765 3678899988 444321 013566666
Q ss_pred HhhC---CCCCCCCCeEEEEeC---Cchhh-HHHHhhhC-CCceEEEEecCCCHHHHhhhcCCCCCCCHHHHHHHHHHHH
Q 017203 187 IMTG---LPFQVSPKRITVSTV---GIVHA-INKFHSDL-PGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQ 258 (375)
Q Consensus 187 ~l~~---~g~~i~~~~itisTn---G~~~~-i~~l~~~~-~~v~laiSL~a~~~~~r~~i~p~~~~~~~~~vl~~l~~~~ 258 (375)
.+.+ ...++ ..+.+.+. .+.+. ++.+++.. ....+.+.+.+.+++..+.+ +++++.+++.++++. +
T Consensus 229 ~l~~~~~~~~~i--~~ir~~s~~p~~i~~ell~~m~~~~~gc~~l~iglQSgsd~vLk~m---~R~~t~e~~~~~v~~-i 302 (455)
T PRK14335 229 HIVRRAEVTDQI--RWIRFMSSHPKDLSDDLIATIAQESRLCRLVHLPVQHGSNGVLKRM---NRSYTREHYLSLVGK-L 302 (455)
T ss_pred HHHHhhcccCCc--eEEEEeecCcccCCHHHHHHHHhCCCCCCeEEEccCcCCHHHHHHc---CCCCCHHHHHHHHHH-H
Confidence 6631 11111 24444332 22233 33444421 23468889999998887764 677899999999954 4
Q ss_pred HhcCCcEEEEEE-eeCCCCCCHHHHHHHHHHHhcCCC-EEEEeecCCCCCCC
Q 017203 259 KNSQQKIFIEYI-MLDGVNDEEQHAHQLGKLLETFQV-VVNLIPFNPIGSVS 308 (375)
Q Consensus 259 ~~~g~~v~i~~v-li~gvND~~e~~~~L~~~l~~~~~-~vnLip~np~~~~~ 308 (375)
++....+.+..- ++.-.+++++++++.++|++.++. .+++.+|.|. +++
T Consensus 303 r~~~pgi~i~~d~IvGfPgET~edf~~Tl~~i~~l~~~~~~~~~~sp~-pGT 353 (455)
T PRK14335 303 KASIPNVALSTDILIGFPGETEEDFEQTLDLMREVEFDSAFMYHYNPR-EGT 353 (455)
T ss_pred HHhCCCCEEEEEEEEeCCCCCHHHHHHHHHHHHhcCCCeEEEEEecCC-CCC
Confidence 455223344433 333357899999999999999975 4778888887 454
No 112
>PRK08207 coproporphyrinogen III oxidase; Provisional
Probab=99.08 E-value=3.7e-08 Score=101.16 Aligned_cols=206 Identities=11% Similarity=0.162 Sum_probs=129.5
Q ss_pred eEEEEeecCCCCCcCccccCCCCCc--ccCC---CHHHHHHHHHHhhh-----hCCcceEEEEeCCCccc-CHHHHHHHH
Q 017203 117 STLCISSQVGCKMGCNFCATGTMGF--KSNL---SSGEIVEQLVHASR-----LSNIRNVVFMGMGEPLN-NYAALVEAV 185 (375)
Q Consensus 117 ~tl~vssq~GCnl~C~fC~~~~~~~--~r~l---t~~ei~~qi~~~~~-----~~~i~~Ivf~GmGEPll-n~~~l~~~i 185 (375)
.+|+|.. .-||.+|.||....... .+.+ -.+.+++++..... ..++..|.|.| |+|++ +.+.+.+++
T Consensus 164 ~sLYihI-PFC~~~C~YCsf~s~~~~~~~~~~~~Y~~aL~~EI~~~~~~~~~~~~~v~tIyfGG-GTPt~L~~~~L~~Ll 241 (488)
T PRK08207 164 VSIYIGI-PFCPTRCLYCSFPSYPIKGYKGLVEPYLEALHYEIEEIGKYLKEKGLKITTIYFGG-GTPTSLTAEELERLL 241 (488)
T ss_pred eEEEEec-CCCCCcCCCCCCccccCCCCcchHHHHHHHHHHHHHHHHhhhcccCCceeEEEEeC-CCccCCCHHHHHHHH
Confidence 4555544 67999999998654311 1121 12444555544321 12577899999 99984 677888888
Q ss_pred HHhhCCCCCCCC-CeEEEEe-C--Cchh-hHHHHhhhCCCceEEEEecCCCHHHHhhhcCCCCCCCHHHHHHHHHHHHHh
Q 017203 186 RIMTGLPFQVSP-KRITVST-V--GIVH-AINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKN 260 (375)
Q Consensus 186 ~~l~~~g~~i~~-~~itisT-n--G~~~-~i~~l~~~~~~v~laiSL~a~~~~~r~~i~p~~~~~~~~~vl~~l~~~~~~ 260 (375)
+.+++...+++. ..+++.. + .+.+ .++.|.+.+ ...+.|++.+.+++..+.+ ++..+.+++.++++ .+++
T Consensus 242 ~~i~~~f~~~~~~~EiTvE~grPd~it~e~L~~Lk~~G-v~RISIGvQS~~d~vLk~i---gR~ht~e~v~~ai~-~ar~ 316 (488)
T PRK08207 242 EEIYENFPDVKNVKEFTVEAGRPDTITEEKLEVLKKYG-VDRISINPQTMNDETLKAI---GRHHTVEDIIEKFH-LARE 316 (488)
T ss_pred HHHHHhccccCCceEEEEEcCCCCCCCHHHHHHHHhcC-CCeEEEcCCcCCHHHHHHh---CCCCCHHHHHHHHH-HHHh
Confidence 888654112222 2456543 2 2333 355555554 3578899999999998887 55689999999994 6677
Q ss_pred cCCcEEEEEEeeCC-CCCCHHHHHHHHHHHhcCCC-EEEEeecCCCCCCC-------CCCCCcHHHHHHHH----HHHHh
Q 017203 261 SQQKIFIEYIMLDG-VNDEEQHAHQLGKLLETFQV-VVNLIPFNPIGSVS-------QFRTSSDDKVSSFQ----KILRG 327 (375)
Q Consensus 261 ~g~~v~i~~vli~g-vND~~e~~~~L~~~l~~~~~-~vnLip~np~~~~~-------~~~~~s~e~i~~f~----~~l~~ 327 (375)
.|.. .+.+-+|-| .+++.+++.+.++++..+++ .+.+.++.+. +++ .+..|+.++..++. +.++
T Consensus 317 ~Gf~-~In~DLI~GLPgEt~ed~~~tl~~l~~L~pd~isv~~L~i~-~gT~l~~~~~~~~~~~~~~~~~m~~~a~~~l~- 393 (488)
T PRK08207 317 MGFD-NINMDLIIGLPGEGLEEVKHTLEEIEKLNPESLTVHTLAIK-RASRLTENKEKYKVADREEIEKMMEEAEEWAK- 393 (488)
T ss_pred CCCC-eEEEEEEeCCCCCCHHHHHHHHHHHHhcCcCEEEEEeceEc-CCChHHHhcCcCCCcCHHHHHHHHHHHHHHHH-
Confidence 7763 233333334 46889999999999999986 3555555543 222 34456665554444 4455
Q ss_pred cCCce
Q 017203 328 SYNIR 332 (375)
Q Consensus 328 ~~Gi~ 332 (375)
+.|+.
T Consensus 394 ~~Gy~ 398 (488)
T PRK08207 394 ELGYV 398 (488)
T ss_pred HcCCH
Confidence 46654
No 113
>PRK05628 coproporphyrinogen III oxidase; Validated
Probab=99.07 E-value=4.4e-08 Score=97.64 Aligned_cols=176 Identities=11% Similarity=0.122 Sum_probs=118.0
Q ss_pred eEEEEeecCCCCCcCccccCCCCCccc---CCC----HHHHHHHHHHhhhh-----CCcceEEEEeCCCcc-cCHHHHHH
Q 017203 117 STLCISSQVGCKMGCNFCATGTMGFKS---NLS----SGEIVEQLVHASRL-----SNIRNVVFMGMGEPL-NNYAALVE 183 (375)
Q Consensus 117 ~tl~vssq~GCnl~C~fC~~~~~~~~r---~lt----~~ei~~qi~~~~~~-----~~i~~Ivf~GmGEPl-ln~~~l~~ 183 (375)
+.+.| .=|+.+|.||.-....... .-+ .+.+.+++...... ..+..|.|-| |.|+ ++++.+.+
T Consensus 5 lYiHi---PFC~~~C~yC~f~~~~~~~~~~~~~~~~Y~~~l~~Ei~~~~~~~~~~~~~i~~i~~GG-GTPs~l~~~~l~~ 80 (375)
T PRK05628 5 VYVHV---PFCATRCGYCDFNTYTAAELGGGASPDGYLDALRAELELAAAVLGDPAPPVSTVFVGG-GTPSLLGAEGLAR 80 (375)
T ss_pred EEEEe---CCcCCcCCCCCCCcccccccccccCHHHHHHHHHHHHHHHHHhhccCCCceeEEEeCC-CccccCCHHHHHH
Confidence 44555 6799999999764321111 123 33444444433221 2467888888 9998 56778888
Q ss_pred HHHHhhCC-CCCCCCCeEEEEeCCch---hhHHHHhhhCCCceEEEEecCCCHHHHhhhcCCCCCCCHHHHHHHHHHHHH
Q 017203 184 AVRIMTGL-PFQVSPKRITVSTVGIV---HAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQK 259 (375)
Q Consensus 184 ~i~~l~~~-g~~i~~~~itisTnG~~---~~i~~l~~~~~~v~laiSL~a~~~~~r~~i~p~~~~~~~~~vl~~l~~~~~ 259 (375)
+++.+++. ++. ....+++.+|.-. ..++.|.+.+ ...+.|.+.+.+++..+.+ ++..+.+++.++++ .++
T Consensus 81 ll~~i~~~~~~~-~~~e~t~e~~p~~i~~e~l~~l~~~G-~~rvslGvQS~~~~~L~~l---~R~~s~~~~~~a~~-~l~ 154 (375)
T PRK05628 81 VLDAVRDTFGLA-PGAEVTTEANPESTSPEFFAALRAAG-FTRVSLGMQSAAPHVLAVL---DRTHTPGRAVAAAR-EAR 154 (375)
T ss_pred HHHHHHHhCCCC-CCCEEEEEeCCCCCCHHHHHHHHHcC-CCEEEEecccCCHHHHHHc---CCCCCHHHHHHHHH-HHH
Confidence 88888764 432 1246888887632 2455565554 3578999999999988876 56789999999994 566
Q ss_pred hcCCc-EEEEEEe-eCCCCCCHHHHHHHHHHHhcCCC-EEEEeecCCC
Q 017203 260 NSQQK-IFIEYIM-LDGVNDEEQHAHQLGKLLETFQV-VVNLIPFNPI 304 (375)
Q Consensus 260 ~~g~~-v~i~~vl-i~gvND~~e~~~~L~~~l~~~~~-~vnLip~np~ 304 (375)
+.|.. +.+.+++ +| ..+.+++.+.++++..+++ ++.+-++.+.
T Consensus 155 ~~g~~~v~~dli~GlP--gqt~~~~~~tl~~~~~l~~~~i~~y~l~~~ 200 (375)
T PRK05628 155 AAGFEHVNLDLIYGTP--GESDDDWRASLDAALEAGVDHVSAYALIVE 200 (375)
T ss_pred HcCCCcEEEEEeccCC--CCCHHHHHHHHHHHHhcCCCEEEeeeeecC
Confidence 77776 6665443 35 4688999999999999885 4666555543
No 114
>PRK14333 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=99.05 E-value=1.5e-08 Score=103.19 Aligned_cols=183 Identities=14% Similarity=0.248 Sum_probs=121.8
Q ss_pred eEEEEeecCCCCCcCccccCCCC-CcccCCCHHHHHHHHHHhhhhCCcceEEEEeC-----------CCccc-CHHHHHH
Q 017203 117 STLCISSQVGCKMGCNFCATGTM-GFKSNLSSGEIVEQLVHASRLSNIRNVVFMGM-----------GEPLN-NYAALVE 183 (375)
Q Consensus 117 ~tl~vssq~GCnl~C~fC~~~~~-~~~r~lt~~ei~~qi~~~~~~~~i~~Ivf~Gm-----------GEPll-n~~~l~~ 183 (375)
...++..|.|||.+|.||..+.. |..+..++++|++++..... .++..|+|.|. +.|.. ++..+.+
T Consensus 148 ~~a~i~i~~GC~~~CsFC~ip~~rG~~rsr~~e~V~~Ei~~l~~-~g~kei~l~~~~~~~yg~d~~~~~p~~~~~~~l~~ 226 (448)
T PRK14333 148 ITAWVNVIYGCNERCTYCVVPSVRGKEQSRTPEAIRAEIEELAA-QGYKEITLLGQNIDAYGRDLPGTTPEGRHQHTLTD 226 (448)
T ss_pred eeEEEEhhcCCCCCCCCCceecccCCCcccCHHHHHHHHHHHHH-CCCcEEEEEecccchhcCCCCCccccccccccHHH
Confidence 35677778999999999987643 34467889999999987654 36778888761 22322 1235777
Q ss_pred HHHHhhCC-CCCCCCCeEEEEeCC---chhhH-HHHhhhC-CCceEEEEecCCCHHHHhhhcCCCCCCCHHHHHHHHHHH
Q 017203 184 AVRIMTGL-PFQVSPKRITVSTVG---IVHAI-NKFHSDL-PGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEY 257 (375)
Q Consensus 184 ~i~~l~~~-g~~i~~~~itisTnG---~~~~i-~~l~~~~-~~v~laiSL~a~~~~~r~~i~p~~~~~~~~~vl~~l~~~ 257 (375)
+++.+.+. |+ .++.+++.- +.+.+ +.+++.. .-..+.|.+.+.+++..+.+ +++++.++..++++.
T Consensus 227 Ll~~i~~~~~~----~rir~~~~~p~~~~~eli~~~~~~~~~~~~l~igiQSgsd~vLk~m---~R~~t~e~~~~~i~~- 298 (448)
T PRK14333 227 LLYYIHDVEGI----ERIRFATSHPRYFTERLIKACAELPKVCEHFHIPFQSGDNEILKAM---ARGYTHEKYRRIIDK- 298 (448)
T ss_pred HHHHHHhcCCC----eEEEECCCChhhhhHHHHHHHhcCCcccccccCCCccCCHHHHHhc---CCCCCHHHHHHHHHH-
Confidence 77777664 42 346664321 22222 3333321 11346788899999887775 667899999999954
Q ss_pred HHhcCCcEEEEEEeeCC-CCCCHHHHHHHHHHHhcCCC-EEEEeecCCCCCCCC
Q 017203 258 QKNSQQKIFIEYIMLDG-VNDEEQHAHQLGKLLETFQV-VVNLIPFNPIGSVSQ 309 (375)
Q Consensus 258 ~~~~g~~v~i~~vli~g-vND~~e~~~~L~~~l~~~~~-~vnLip~np~~~~~~ 309 (375)
+++.+..+.+..-+|-| .++++++++++++|+++++. .+++.+|.|. ++++
T Consensus 299 lr~~~p~i~i~~d~IvGfPgET~edf~~tl~~l~~~~~~~~~~~~~sp~-pGT~ 351 (448)
T PRK14333 299 IREYMPDASISADAIVGFPGETEAQFENTLKLVEEIGFDQLNTAAYSPR-PGTP 351 (448)
T ss_pred HHHhCCCcEEEeeEEEECCCCCHHHHHHHHHHHHHcCCCEEeeeeeecC-CCCc
Confidence 45554445444444433 57899999999999999986 4788888887 4554
No 115
>PRK08208 coproporphyrinogen III oxidase; Validated
Probab=99.05 E-value=5.3e-08 Score=98.74 Aligned_cols=206 Identities=15% Similarity=0.151 Sum_probs=130.9
Q ss_pred eEEEEeecCCCCCcCccccCCCC-CcccCC---CHHHHHHHHHHhhh---hCCcceEEEEeCCCccc-CHHHHHHHHHHh
Q 017203 117 STLCISSQVGCKMGCNFCATGTM-GFKSNL---SSGEIVEQLVHASR---LSNIRNVVFMGMGEPLN-NYAALVEAVRIM 188 (375)
Q Consensus 117 ~tl~vssq~GCnl~C~fC~~~~~-~~~r~l---t~~ei~~qi~~~~~---~~~i~~Ivf~GmGEPll-n~~~l~~~i~~l 188 (375)
.+++|-. .=|+.+|.||..... +..... ..+.+++++..... ...+..|.|.| |+|++ +.+.+.++++.+
T Consensus 40 ~~lYvHI-PFC~~~C~yC~~~~~~~~~~~~~~~y~~~L~~Ei~~~~~~~~~~~i~~i~~GG-GTPs~l~~~~l~~Ll~~i 117 (430)
T PRK08208 40 LSLYIHI-PFCEMRCGFCNLFTRTGADAEFIDSYLDALIRQAEQVAEALAPARFASFAVGG-GTPTLLNAAELEKLFDSV 117 (430)
T ss_pred eEEEEEe-CCccCcCCCCCCccccCCccchHHHHHHHHHHHHHHHHHHcCCCceeEEEEcC-CccccCCHHHHHHHHHHH
Confidence 4455544 679999999976433 111111 23455555554332 12467888888 99986 567788888888
Q ss_pred hCC-CCCCCCCeEEEEeCCch--h-hHHHHhhhCCCceEEEEecCCCHHHHhhhcCCCCCCCHHHHHHHHHHHHHhcCCc
Q 017203 189 TGL-PFQVSPKRITVSTVGIV--H-AINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQK 264 (375)
Q Consensus 189 ~~~-g~~i~~~~itisTnG~~--~-~i~~l~~~~~~v~laiSL~a~~~~~r~~i~p~~~~~~~~~vl~~l~~~~~~~g~~ 264 (375)
++. ++......+++.||.-. + .++.|.+.+ ...|.|++.+.+++....+ ++..+.+++.+++ +.+++.|..
T Consensus 118 ~~~~~~~~~~~eitiE~~P~~lt~e~l~~l~~~G-~~rvslGvQS~~~~~L~~l---~R~~~~~~~~~ai-~~l~~~g~~ 192 (430)
T PRK08208 118 ERVLGVDLGNIPKSVETSPATTTAEKLALLAARG-VNRLSIGVQSFHDSELHAL---HRPQKRADVHQAL-EWIRAAGFP 192 (430)
T ss_pred HHhCCCCCCCceEEEEeCcCcCCHHHHHHHHHcC-CCEEEEecccCCHHHHHHh---CCCCCHHHHHHHH-HHHHHcCCC
Confidence 754 32211246889998732 2 355555543 3578899999998887776 4567899999999 566777765
Q ss_pred E-EEEEEeeCCCCCCHHHHHHHHHHHhcCCC-EEEEeecCCCCCCCCC---CCCcHHHH----HHHHHHHHhcCCce
Q 017203 265 I-FIEYIMLDGVNDEEQHAHQLGKLLETFQV-VVNLIPFNPIGSVSQF---RTSSDDKV----SSFQKILRGSYNIR 332 (375)
Q Consensus 265 v-~i~~vli~gvND~~e~~~~L~~~l~~~~~-~vnLip~np~~~~~~~---~~~s~e~i----~~f~~~l~~~~Gi~ 332 (375)
+ .+. +++.-.+++.+++.+.++++..+++ ++.+.++.+. +++.+ ..++.++. +...+.|. +.|+.
T Consensus 193 ~i~~d-lI~GlP~qt~e~~~~~l~~~~~l~~~~is~y~L~~~-~~T~l~~~~~~~~~~~~~m~~~~~~~L~-~~Gy~ 266 (430)
T PRK08208 193 ILNID-LIYGIPGQTHASWMESLDQALVYRPEELFLYPLYVR-PLTGLGRRARAWDDQRLSLYRLARDLLL-EAGYT 266 (430)
T ss_pred eEEEE-eecCCCCCCHHHHHHHHHHHHhCCCCEEEEcccccc-CCCccchhcCCCHHHHHHHHHHHHHHHH-HcCCe
Confidence 3 333 2333357899999999999999875 5777777655 33322 12333332 33345566 56764
No 116
>COG0621 MiaB 2-methylthioadenine synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.03 E-value=1.3e-08 Score=102.25 Aligned_cols=184 Identities=15% Similarity=0.333 Sum_probs=131.5
Q ss_pred CceEEEEeecCCCCCcCccccCCCC-CcccCCCHHHHHHHHHHhhhhCCcceEEEEeC-----CCcccC-HHHHHHHHHH
Q 017203 115 PRSTLCISSQVGCKMGCNFCATGTM-GFKSNLSSGEIVEQLVHASRLSNIRNVVFMGM-----GEPLNN-YAALVEAVRI 187 (375)
Q Consensus 115 ~r~tl~vssq~GCnl~C~fC~~~~~-~~~r~lt~~ei~~qi~~~~~~~~i~~Ivf~Gm-----GEPlln-~~~l~~~i~~ 187 (375)
.....+|+.|.|||.+|.||..+.. |..+..++++|++++..+.. .++..|+++|. |--+-. ...+.++++.
T Consensus 142 ~~~~A~v~I~eGCn~~CtfCiiP~~RG~~rSr~~e~Il~ev~~Lv~-~G~kEI~L~gqdv~aYG~D~~~~~~~l~~Ll~~ 220 (437)
T COG0621 142 GGVRAFVKIQEGCNKFCTFCIIPYARGKERSRPPEDILKEVKRLVA-QGVKEIVLTGQDVNAYGKDLGGGKPNLADLLRE 220 (437)
T ss_pred CCeEEEEEhhcCcCCCCCeeeeeccCCCccCCCHHHHHHHHHHHHH-CCCeEEEEEEEehhhccccCCCCccCHHHHHHH
Confidence 4588899999999999999998753 45678899999999998765 47888999883 444421 1246667777
Q ss_pred hhCC-CCCCCCCeEEEEeCCch---hhHHHHhhhCCCc--eEEEEecCCCHHHHhhhcCCCCCCCHHHHHHHHHHHHHhc
Q 017203 188 MTGL-PFQVSPKRITVSTVGIV---HAINKFHSDLPGL--NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNS 261 (375)
Q Consensus 188 l~~~-g~~i~~~~itisTnG~~---~~i~~l~~~~~~v--~laiSL~a~~~~~r~~i~p~~~~~~~~~vl~~l~~~~~~~ 261 (375)
+.+- |+ .+|.++|.=-. +.+-++....+.+ .|-+++.+.++..-+.. +++|+.++.++.++++ ++.
T Consensus 221 l~~I~G~----~riR~~~~~P~~~~d~lI~~~~~~~kv~~~lHlPvQsGsd~ILk~M---~R~yt~e~~~~~i~k~-R~~ 292 (437)
T COG0621 221 LSKIPGI----ERIRFGSSHPLEFTDDLIEAIAETPKVCPHLHLPVQSGSDRILKRM---KRGYTVEEYLEIIEKL-RAA 292 (437)
T ss_pred HhcCCCc----eEEEEecCCchhcCHHHHHHHhcCCcccccccCccccCCHHHHHHh---CCCcCHHHHHHHHHHH-HHh
Confidence 7664 42 56777775422 2332333333333 47788888888765443 6778999999888654 455
Q ss_pred CCcEEEEEEeeCC-CCCCHHHHHHHHHHHhcCCC-EEEEeecCCCCCCC
Q 017203 262 QQKIFIEYIMLDG-VNDEEQHAHQLGKLLETFQV-VVNLIPFNPIGSVS 308 (375)
Q Consensus 262 g~~v~i~~vli~g-vND~~e~~~~L~~~l~~~~~-~vnLip~np~~~~~ 308 (375)
-..+.+..-+|-| ...++++.+++.+|+++.+. .++..+|.|- +++
T Consensus 293 ~Pd~~i~tDiIVGFPgETeedFe~tl~lv~e~~fd~~~~F~YSpR-pGT 340 (437)
T COG0621 293 RPDIAISTDIIVGFPGETEEDFEETLDLVEEVRFDRLHVFKYSPR-PGT 340 (437)
T ss_pred CCCceEeccEEEECCCCCHHHHHHHHHHHHHhCCCEEeeeecCCC-CCC
Confidence 5667777766655 46789999999999999986 5899999987 444
No 117
>TIGR01212 radical SAM protein, TIGR01212 family. This uncharacterized protein family shows significant similarity to TIGR01211, a longer protein that is a histone acetyltransferase at its C-terminus and is a subunit of RNA polymerase II (in yeast). This family lacks the GNAT acetyltransferase domain.
Probab=99.03 E-value=6.4e-08 Score=93.67 Aligned_cols=200 Identities=14% Similarity=0.177 Sum_probs=128.2
Q ss_pred ecCCCCC--------cCccccCCCCCccc---CCCHHHHHHHHHHhhhh---CCcceEEEEeCCCcc-cCHHHHHHHHHH
Q 017203 123 SQVGCKM--------GCNFCATGTMGFKS---NLSSGEIVEQLVHASRL---SNIRNVVFMGMGEPL-NNYAALVEAVRI 187 (375)
Q Consensus 123 sq~GCnl--------~C~fC~~~~~~~~r---~lt~~ei~~qi~~~~~~---~~i~~Ivf~GmGEPl-ln~~~l~~~i~~ 187 (375)
-..+||. +|.||.....+... ..+..+|.+|+...... .....|.|-| |.|+ +..+.+.++++.
T Consensus 24 ~g~~cpnrdg~~~~~gC~FC~~~~~~~~~~~~~~~~~~i~~qi~~~~~~~~~~~~~~iyf~g-gt~t~l~~~~L~~l~~~ 102 (302)
T TIGR01212 24 GGFSCPNRDGTKGRGGCTFCNDASRPIFADEYTQARIPIKEQIKKQMKKYKKDKKFIAYFQA-YTNTYAPVEVLKEMYEQ 102 (302)
T ss_pred CCCCCCCCCCCCCCCCcccCCCCCCccccccccccCCCHHHHHHHHHHHhhccCEEEEEEEC-CCcCCCCHHHHHHHHHH
Confidence 3466887 79999875544222 13345566666654332 1222366666 9999 556778888888
Q ss_pred hhCCCCCCCCCeEEEEeCC--chh-hHHHHhh---hCCCceEEEEecCCCHHHHhhhcCCCCCCCHHHHHHHHHHHHHhc
Q 017203 188 MTGLPFQVSPKRITVSTVG--IVH-AINKFHS---DLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNS 261 (375)
Q Consensus 188 l~~~g~~i~~~~itisTnG--~~~-~i~~l~~---~~~~v~laiSL~a~~~~~r~~i~p~~~~~~~~~vl~~l~~~~~~~ 261 (375)
+.+.. ....+++.|+- +.+ .++.|.+ .+....+.+.+.+.+++..+.+ ++..+.+++.++++ .+++.
T Consensus 103 i~~~~---~~~~isi~trpd~l~~e~l~~L~~l~~~G~~~~i~lGlQS~~d~~L~~i---~Rg~t~~~~~~ai~-~l~~~ 175 (302)
T TIGR01212 103 ALSYD---DVVGLSVGTRPDCVPDEVLDLLAEYVERGYEVWVELGLQTAHDKTLKKI---NRGHDFACYVDAVK-RARKR 175 (302)
T ss_pred HhCCC---CEEEEEEEecCCcCCHHHHHHHHHhhhCCceEEEEEccCcCCHHHHHHH---cCcChHHHHHHHHH-HHHHc
Confidence 87642 11457777643 222 2333332 2211346778999999988877 56788999999994 56778
Q ss_pred CCcEEEEEEeeCCCCCCHHHHHHHHHHHhcCCCE-EEEeecCCCCCC---------CCCCCCcHHH-HHHHHHHHHhcCC
Q 017203 262 QQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVV-VNLIPFNPIGSV---------SQFRTSSDDK-VSSFQKILRGSYN 330 (375)
Q Consensus 262 g~~v~i~~vli~gvND~~e~~~~L~~~l~~~~~~-vnLip~np~~~~---------~~~~~~s~e~-i~~f~~~l~~~~G 330 (375)
|..+.. .+++....++.+++.+.++++..+++. +.+.++.|. ++ ..|.+++.++ ++.....++ ...
T Consensus 176 gi~v~~-~lI~GlPget~e~~~~t~~~l~~l~~d~i~i~~l~~~-pgT~L~~~~~~g~~~~~~~~e~~~~~~~~l~-~l~ 252 (302)
T TIGR01212 176 GIKVCS-HVILGLPGEDREEMMETAKIVSLLDVDGIKIHPLHVV-KGTKMAKMYEKGELKTLSLEEYISLACDFLE-HLP 252 (302)
T ss_pred CCEEEE-eEEECCCCCCHHHHHHHHHHHHhcCCCEEEEEEEEec-CCCHHHHHHHcCCCCCCCHHHHHHHHHHHHH-hCC
Confidence 877655 334443478999999999999999764 777777766 22 3466777766 555556665 344
Q ss_pred ceE
Q 017203 331 IRT 333 (375)
Q Consensus 331 i~v 333 (375)
..+
T Consensus 253 ~~~ 255 (302)
T TIGR01212 253 PEV 255 (302)
T ss_pred cCe
Confidence 433
No 118
>TIGR03700 mena_SCO4494 putative menaquinone biosynthesis protein, SCO4494 family. Members of this protein family appear to be involved in menaquinone biosynthesis by an alternate pathway via futalosine, based on close phylogenetic correlation with known markers of the futalosine pathway, gene clustering in many organisms, and paralogy with the SCO4550 protein.
Probab=99.01 E-value=3.7e-08 Score=97.30 Aligned_cols=195 Identities=16% Similarity=0.183 Sum_probs=127.5
Q ss_pred EeecCCCCCcCccccCCCCC---cccCCCHHHHHHHHHHhhhhCCcceEEEEeCCCcc-cCHHHHHHHHHHhhCCCCCCC
Q 017203 121 ISSQVGCKMGCNFCATGTMG---FKSNLSSGEIVEQLVHASRLSNIRNVVFMGMGEPL-NNYAALVEAVRIMTGLPFQVS 196 (375)
Q Consensus 121 vssq~GCnl~C~fC~~~~~~---~~r~lt~~ei~~qi~~~~~~~~i~~Ivf~GmGEPl-ln~~~l~~~i~~l~~~g~~i~ 196 (375)
+..+.+|+.+|.||.-.... ....++.+||++.+..+.. .+++.|.+.| |+.. +.++.+.++++.+++.. +
T Consensus 52 in~Tn~C~~~C~FCa~~~~~~~~~~y~l~~eeI~~~a~~~~~-~G~~~v~l~~-G~~p~~~~~~~~e~i~~Ik~~~---p 126 (351)
T TIGR03700 52 LNYTNICVNGCAFCAFQRERGEPGAYAMSLEEIVARVKEAYA-PGATEVHIVG-GLHPNLPFEWYLDMIRTLKEAY---P 126 (351)
T ss_pred cccccccccCCccCceeCCCCCcccCCCCHHHHHHHHHHHHH-CCCcEEEEec-CCCCCCCHHHHHHHHHHHHHHC---C
Confidence 44459999999999875421 1123799999999987664 4788999998 8754 44578999999998763 1
Q ss_pred CCeEEEE----------eCCchh--hHHHHhhhCCCceEE-EEecCCCHHHHhhhcCCCCCCCHHHHHHHHHHHHHhcCC
Q 017203 197 PKRITVS----------TVGIVH--AINKFHSDLPGLNLA-VSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQ 263 (375)
Q Consensus 197 ~~~itis----------TnG~~~--~i~~l~~~~~~v~la-iSL~a~~~~~r~~i~p~~~~~~~~~vl~~l~~~~~~~g~ 263 (375)
..++... ..|... .+++|.+.+. ..+. ..+.+.+++.|..+.|. +.+.++.++.+ +.+++.|.
T Consensus 127 ~i~i~~~~~~ei~~~~~~~g~~~~e~l~~LkeAGl-d~~~~~g~E~~~~~v~~~i~~~--~~~~~~~l~~i-~~a~~~Gi 202 (351)
T TIGR03700 127 DLHVKAFTAVEIHHFSKISGLPTEEVLDELKEAGL-DSMPGGGAEIFAEEVRQQICPE--KISAERWLEIH-RTAHELGL 202 (351)
T ss_pred CceEEeCCHHHHHHHHHHcCCCHHHHHHHHHHcCC-CcCCCCcccccCHHHHhhcCCC--CCCHHHHHHHH-HHHHHcCC
Confidence 1333332 245432 3677887763 2333 46677788899888653 45678888999 45677888
Q ss_pred cEEEEEEeeCCCCCCHHHHHHHHHHHhcCCCE----EEEeecC--CCC-CCCCC--CCCcHHHHHHHHHHHH
Q 017203 264 KIFIEYIMLDGVNDEEQHAHQLGKLLETFQVV----VNLIPFN--PIG-SVSQF--RTSSDDKVSSFQKILR 326 (375)
Q Consensus 264 ~v~i~~vli~gvND~~e~~~~L~~~l~~~~~~----vnLip~n--p~~-~~~~~--~~~s~e~i~~f~~~l~ 326 (375)
+++.-+ +=|.-++.++..+.+..++++... ..++|+| |.+ +.... ++++..+..+.....+
T Consensus 203 ~~~sg~--i~GlgEt~edrv~~l~~Lr~l~~~~~~f~~fiP~~f~~~~tpl~~~~~~~~~~~e~lr~iA~~R 272 (351)
T TIGR03700 203 KTNATM--LYGHIETPAHRVDHMLRLRELQDETGGFQAFIPLAFQPDNNRLNRLLAKGPTGLDDLKTLAVSR 272 (351)
T ss_pred CcceEE--EeeCCCCHHHHHHHHHHHHHhhHhhCCceEEEeecccCCCCcccCCCCCCCCHHHHHHHHHHHH
Confidence 775543 335667888888888888877653 2456654 221 22222 4566666666555544
No 119
>TIGR01210 conserved hypothetical protein TIGR01210. This family of exclusively archaeal proteins has no characterized close homologs. Several rounds of PSI-BLAST with a stringent cutoff of 1e-8 shows apparent similarity of the central region of this family to the central regions of the oxygen-independent coproporphyrinogen III dehydrogenase HemN and to other enzymes.
Probab=99.01 E-value=1.5e-07 Score=91.51 Aligned_cols=207 Identities=14% Similarity=0.165 Sum_probs=129.9
Q ss_pred CceEEEEeecCCCCC----cCccccCCCCCcccCCCHHHHHHHHHHhhhhCCcc----e-EEEEeCC---Cccc-CHHHH
Q 017203 115 PRSTLCISSQVGCKM----GCNFCATGTMGFKSNLSSGEIVEQLVHASRLSNIR----N-VVFMGMG---EPLN-NYAAL 181 (375)
Q Consensus 115 ~r~tl~vssq~GCnl----~C~fC~~~~~~~~r~lt~~ei~~qi~~~~~~~~i~----~-Ivf~GmG---EPll-n~~~l 181 (375)
...++++. +.||+. +|.||...... .+..+++.+++++.......+.. . -.|++ | +|.. .++.+
T Consensus 14 ~~~~~i~~-srGC~~~~~g~C~FC~~~~~~-~r~~s~e~i~~~i~~~~~~~~~~~~~~~ikif~s-gsf~D~~~~~~~~~ 90 (313)
T TIGR01210 14 KSLTIILR-TRGCYWAREGGCYMCGYLADS-SPEVTEENLINQFDEAIEKYKEKIKDFVIKIFTS-GSFLDDREVPKETR 90 (313)
T ss_pred ceEEEEEe-CCCCCCCCCCcCccCCCCCCC-CCCCChhHHHHHHHHHHHHhhcccccEEEEEecC-CCcCCcCcCCHHHH
Confidence 34555443 499999 59999654333 24568999999998865432211 1 23666 5 4443 45667
Q ss_pred HHHHHHhhCCCCCCCCCeEEEEeCC--chh-hHHHHhhhCCCceEEEEecCCCHHHHh-hhcCCCCCCCHHHHHHHHHHH
Q 017203 182 VEAVRIMTGLPFQVSPKRITVSTVG--IVH-AINKFHSDLPGLNLAVSLHAPVQDVRC-QIMPAARAFPLEKLMNALKEY 257 (375)
Q Consensus 182 ~~~i~~l~~~g~~i~~~~itisTnG--~~~-~i~~l~~~~~~v~laiSL~a~~~~~r~-~i~p~~~~~~~~~vl~~l~~~ 257 (375)
.++++.+++.+ .+ ..+++.|+- +.+ .+..+.+.+..+.|.+.+.+.+++.++ .+ |++.+.+++.+++ +.
T Consensus 91 ~~i~~~l~~~~-~~--~~i~~esrpd~i~~e~L~~l~~aG~~~~v~iG~ES~~d~~L~~~i---nKg~t~~~~~~ai-~~ 163 (313)
T TIGR01210 91 NYIFEKIAQRD-NL--KEVVVESRPEFIDEEKLEELRKIGVNVEVAVGLETANDRIREKSI---NKGSTFEDFIRAA-EL 163 (313)
T ss_pred HHHHHHHHhcC-Cc--ceEEEEeCCCcCCHHHHHHHHHcCCCEEEEEecCcCCHHHHHHhh---CCCCCHHHHHHHH-HH
Confidence 78888887653 01 357777754 222 455666654323588899999999985 45 7788999999999 56
Q ss_pred HHhcCCcEEEEEEeeCCCC----CCHHHHHHHHHHHhcCCCEEEEeecCCCC--------CCCCCCCCcHHHHHHHHHHH
Q 017203 258 QKNSQQKIFIEYIMLDGVN----DEEQHAHQLGKLLETFQVVVNLIPFNPIG--------SVSQFRTSSDDKVSSFQKIL 325 (375)
Q Consensus 258 ~~~~g~~v~i~~vli~gvN----D~~e~~~~L~~~l~~~~~~vnLip~np~~--------~~~~~~~~s~e~i~~f~~~l 325 (375)
+++.|..+.. +.|+.... ++.+++.+.++++..++.+|.+.|.++.. ....|++|....+.+..+.+
T Consensus 164 ~~~~Gi~v~~-~~i~G~P~~se~ea~ed~~~ti~~~~~l~~~vs~~~l~v~~gT~l~~~~~~G~~~pp~lws~~e~l~e~ 242 (313)
T TIGR01210 164 ARKYGAGVKA-YLLFKPPFLSEKEAIADMISSIRKCIPVTDTVSINPTNVQKGTLVEFLWNRGLYRPPWLWSVAEVLKEA 242 (313)
T ss_pred HHHcCCcEEE-EEEecCCCCChhhhHHHHHHHHHHHHhcCCcEEEECCEEeCCCHHHHHHHcCCCCCCCHHHHHHHHHHH
Confidence 7788988665 44554332 34466667788887776557777766652 12357777544554544444
Q ss_pred HhcCCceE
Q 017203 326 RGSYNIRT 333 (375)
Q Consensus 326 ~~~~Gi~v 333 (375)
+ ..+..|
T Consensus 243 ~-~~~~~~ 249 (313)
T TIGR01210 243 K-KIGAEV 249 (313)
T ss_pred H-hhCCeE
Confidence 4 234444
No 120
>PRK00955 hypothetical protein; Provisional
Probab=98.96 E-value=3.9e-08 Score=102.46 Aligned_cols=186 Identities=18% Similarity=0.276 Sum_probs=117.7
Q ss_pred CCCCceEEEEeecCCCCCcCccccCCCC-Cc-ccCCCHHHHHHHHHHhhhhCCcceEEEEeCCCccc-------------
Q 017203 112 PGGPRSTLCISSQVGCKMGCNFCATGTM-GF-KSNLSSGEIVEQLVHASRLSNIRNVVFMGMGEPLN------------- 176 (375)
Q Consensus 112 ~~~~r~tl~vssq~GCnl~C~fC~~~~~-~~-~r~lt~~ei~~qi~~~~~~~~i~~Ivf~GmGEPll------------- 176 (375)
|.-......|.++.||+.+|.||..+.. |. .+..+.++|++++.......+.+++ ++..|-|..
T Consensus 287 pa~~~i~~sI~i~RGC~g~CSFCaIp~~rGr~~rSRs~esIv~Evk~L~~~~gfkg~-I~DlgGptan~Yg~~c~~~~~~ 365 (620)
T PRK00955 287 PAIEEVKFSITSHRGCFGGCSFCAITFHQGRFIQSRSQESILREAKELTEMPDFKGY-IHDVGGPTANFRKMACKKQLKC 365 (620)
T ss_pred CceeeEEEEEEeeCCCCCCCCCCCeecccCCcceecCHHHHHHHHHHHHhccCCeEE-EEeCCCCCcccccccccccccc
Confidence 4444667778888999999999987654 33 3678999999999887653233333 221112222
Q ss_pred -------------------CHHHHHHHHHHhhCC-CCCCCCCeEEEEeCCc------hh----hHHHHhhhCCCceEEEE
Q 017203 177 -------------------NYAALVEAVRIMTGL-PFQVSPKRITVSTVGI------VH----AINKFHSDLPGLNLAVS 226 (375)
Q Consensus 177 -------------------n~~~l~~~i~~l~~~-g~~i~~~~itisTnG~------~~----~i~~l~~~~~~v~laiS 226 (375)
+...+.++++.+++. |+ .++.|+ +|+ .+ .+++|++....-.|.|.
T Consensus 366 ~~c~~~~clfp~~c~nl~~d~~~l~~LLr~l~~l~gv----krv~is-SGIR~D~l~~~~~~~~l~eL~~~~vsg~L~Ia 440 (620)
T PRK00955 366 GACKNKQCLFPKPCKNLDVDHKEYLELLRKVRKLPGV----KKVFIR-SGIRYDYLLHDKNDEFFEELCEHHVSGQLKVA 440 (620)
T ss_pred ccccccccccCccccccCcChHHHHHHHHHHhccCCc----eEEEee-cceeccccccCCcHHHHHHHHHHhcCCCceeC
Confidence 224688888888875 52 345444 331 11 35566665322257788
Q ss_pred ecCCCHHHHhhhcCCCCCCCHHHHHHHHHHHHHhcCCcEEE-EEEeeCCCCCCHHHHHHHHHHHhcCCCE-EEEeecCCC
Q 017203 227 LHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFI-EYIMLDGVNDEEQHAHQLGKLLETFQVV-VNLIPFNPI 304 (375)
Q Consensus 227 L~a~~~~~r~~i~p~~~~~~~~~vl~~l~~~~~~~g~~v~i-~~vli~gvND~~e~~~~L~~~l~~~~~~-vnLip~np~ 304 (375)
+.+.+++.-+... ......++++++.++++.++.|....+ -++++.-..+++++++++++|+++++.. +++.+|.|.
T Consensus 441 pESgSd~VLk~M~-K~~~~~~~~f~~~~~~i~~~~G~~~~I~~yfIvGfPGETeEDf~et~eflkel~~~~~qV~~fTP~ 519 (620)
T PRK00955 441 PEHISDRVLKLMG-KPSREVYDKFVKKFDRINKKLGKKQYLVPYLMSSHPGSTLEDAIELAEYTKDLGYQPEQVQDFYPT 519 (620)
T ss_pred cCCCChHHHHHhC-CCCHHHHHHHHHHHHHhhhhcCCCccEEEEEEEECCCCCHHHHHHHHHHHHHcCCCcceeeeeecC
Confidence 8898888766542 111112455555666667777765333 3555554678999999999999999853 666677766
No 121
>COG1625 Fe-S oxidoreductase, related to NifB/MoaA family [Energy production and conversion]
Probab=98.96 E-value=2.2e-08 Score=98.30 Aligned_cols=198 Identities=16% Similarity=0.212 Sum_probs=127.2
Q ss_pred CccccCCCCCc-ccCCCHHHHHHHHHHhh--hhCCcceEEEEeCCCcccCHHHHHHHHHHhhCCCCCCCCCeEEEEeCCc
Q 017203 131 CNFCATGTMGF-KSNLSSGEIVEQLVHAS--RLSNIRNVVFMGMGEPLNNYAALVEAVRIMTGLPFQVSPKRITVSTVGI 207 (375)
Q Consensus 131 C~fC~~~~~~~-~r~lt~~ei~~qi~~~~--~~~~i~~Ivf~GmGEPlln~~~l~~~i~~l~~~g~~i~~~~itisTnG~ 207 (375)
|.||+...... ...+....+.+...... .+....+++.||-|+++.. .++.+..+.++..+..-..+---++.||.
T Consensus 44 C~~cy~~v~~~~~~~~~~~~v~~e~~~~lg~~~e~~~~~~~~~~~d~~c~-p~le~~~~r~~~~~~d~~~rL~~tsG~~~ 122 (414)
T COG1625 44 CDDCYLSVNELDTGFIPPLMVEKEPDEDLGLEFEEVLGAKQCGNGDTFCY-PDLEPRGRRARLYYKDDDIRLSFTSGSGF 122 (414)
T ss_pred ccceeeEEecccCCCCCHhHhhcccccccccccccccceeecCCCCcccC-cchhhhhhHHHhhcCCccceeeeeeccce
Confidence 78887643211 12344444444443211 1112238888987888875 57888888887664221112233455665
Q ss_pred h-h-hHHHHhhhCCCceEEEEecCCCHHHHhhhcCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEEeeCCCCCCHHHHHHH
Q 017203 208 V-H-AINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQL 285 (375)
Q Consensus 208 ~-~-~i~~l~~~~~~v~laiSL~a~~~~~r~~i~p~~~~~~~~~vl~~l~~~~~~~g~~v~i~~vli~gvND~~e~~~~L 285 (375)
. + ..+++.+.+ ...|.||+|+++++.|.++|... .-+++++.++.+ ......+....+++||+||. +++.++
T Consensus 123 ~lt~~~~~i~~~g-vdev~~SVhtT~p~lR~klm~n~---~A~~~le~L~~f-~~~~~~v~a~iVl~PGvNdg-e~L~kT 196 (414)
T COG1625 123 TLTNRAERIIDAG-VDEVYFSVHTTNPELRAKLMKNP---NAEQLLELLRRF-AERCIEVHAQIVLCPGVNDG-EELEKT 196 (414)
T ss_pred eccchHHHHHHcC-CCeeEEEEeeCCHHHHHHHhcCC---cHHHHHHHHHHH-HHhhhheeeEEEEcCCcCcH-HHHHHH
Confidence 3 2 346677665 25699999999999999999532 346689999654 46667899999999999986 689999
Q ss_pred HHHHhcCCCE-EEEeecCCCCC---CC-CCCCCcHHHHHHHHHHHH---hcCC-ceEEe
Q 017203 286 GKLLETFQVV-VNLIPFNPIGS---VS-QFRTSSDDKVSSFQKILR---GSYN-IRTTV 335 (375)
Q Consensus 286 ~~~l~~~~~~-vnLip~np~~~---~~-~~~~~s~e~i~~f~~~l~---~~~G-i~v~v 335 (375)
.+-+.+++.+ +.++.+-|.|- .. ..+++..+++++|+++.+ .+.| +.|+-
T Consensus 197 ~~dL~~~g~~~~~~~~~~pvGlt~~n~~~i~~~t~~~l~~~k~i~re~~~E~~~~~V~g 255 (414)
T COG1625 197 LEDLEEWGAHEVILMRVVPVGLTRYNRPGIRPPTPHELEEFKEIVREFDRELGSIRVTG 255 (414)
T ss_pred HHHHHHhCcCceeEEEeecceeeecCCCCCCCCCHHHHHHHHHHHHHHHHhcCceEEeC
Confidence 9888888764 44443444430 01 245677888888887664 2567 66543
No 122
>PRK08445 hypothetical protein; Provisional
Probab=98.87 E-value=2.3e-07 Score=91.52 Aligned_cols=160 Identities=14% Similarity=0.135 Sum_probs=113.9
Q ss_pred cCCCCCcCccccCCCC---CcccCCCHHHHHHHHHHhhhhCCcceEEEEeCCC-cccCHHHHHHHHHHhhCCCCCCCCCe
Q 017203 124 QVGCKMGCNFCATGTM---GFKSNLSSGEIVEQLVHASRLSNIRNVVFMGMGE-PLNNYAALVEAVRIMTGLPFQVSPKR 199 (375)
Q Consensus 124 q~GCnl~C~fC~~~~~---~~~r~lt~~ei~~qi~~~~~~~~i~~Ivf~GmGE-Plln~~~l~~~i~~l~~~g~~i~~~~ 199 (375)
+.+|+.+|.||.-++. .....++.+||++.+..+... +.+.|+++| |+ |.+..+.+.++++.+++.. +..+
T Consensus 49 Tn~C~~~C~FCa~~~~~~~~~~y~l~~eeI~~~~~~a~~~-g~~~i~~~g-g~~~~~~~e~~~~l~~~Ik~~~---p~i~ 123 (348)
T PRK08445 49 TNICWVDCKFCAFYRHLKEDDAYILSFEEIDKKIEELLAI-GGTQILFQG-GVHPKLKIEWYENLVSHIAQKY---PTIT 123 (348)
T ss_pred ccccccCCccCCCccCCCCCCCeeCCHHHHHHHHHHHHHc-CCCEEEEec-CCCCCCCHHHHHHHHHHHHHHC---CCcE
Confidence 4899999999987642 222357999999999987763 568999998 65 5567788999999999863 1123
Q ss_pred EEEEe----------CCc--hhhHHHHhhhCCCceE-EEEecCCCHHHHhhhcCCCCCCCHHHHHHHHHHHHHhcCCcEE
Q 017203 200 ITVST----------VGI--VHAINKFHSDLPGLNL-AVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIF 266 (375)
Q Consensus 200 itisT----------nG~--~~~i~~l~~~~~~v~l-aiSL~a~~~~~r~~i~p~~~~~~~~~vl~~l~~~~~~~g~~v~ 266 (375)
+.-.| .|. ...+++|.+.+. ..+ .+.+.+.+++.++.+.| ++.+.++.++.+ +.+++.|.++.
T Consensus 124 ~~a~s~~ei~~~a~~~~~~~~e~L~~LkeAGl-~~~~g~glE~~~d~v~~~~~p--k~~t~~~~i~~i-~~a~~~Gi~~~ 199 (348)
T PRK08445 124 IHGFSAVEIDYIAKISKISIKEVLERLQAKGL-SSIPGAGAEILSDRVRDIIAP--KKLDSDRWLEVH-RQAHLIGMKST 199 (348)
T ss_pred EEEccHHHHHHHHHHhCCCHHHHHHHHHHcCC-CCCCCCceeeCCHHHHHhhCC--CCCCHHHHHHHH-HHHHHcCCeee
Confidence 32111 122 134677777664 344 36788889999999875 345777878888 56678888776
Q ss_pred EEEEeeCCCCCCHHHHHHHHHHHhcCCC
Q 017203 267 IEYIMLDGVNDEEQHAHQLGKLLETFQV 294 (375)
Q Consensus 267 i~~vli~gvND~~e~~~~L~~~l~~~~~ 294 (375)
.-+ |=|...+.++..+.+.+++++..
T Consensus 200 sg~--i~G~~Et~edr~~~l~~lreLq~ 225 (348)
T PRK08445 200 ATM--MFGTVENDEEIIEHWERIRDLQD 225 (348)
T ss_pred eEE--EecCCCCHHHHHHHHHHHHHHHH
Confidence 654 34666888999999999988754
No 123
>PRK07360 FO synthase subunit 2; Reviewed
Probab=98.87 E-value=2.3e-07 Score=92.36 Aligned_cols=168 Identities=16% Similarity=0.214 Sum_probs=115.2
Q ss_pred cCCCCCcCccccCCCCC---cccCCCHHHHHHHHHHhhhhCCcceEEEEeCC-CcccC-HHHHHHHHHHhhCCCCCCCCC
Q 017203 124 QVGCKMGCNFCATGTMG---FKSNLSSGEIVEQLVHASRLSNIRNVVFMGMG-EPLNN-YAALVEAVRIMTGLPFQVSPK 198 (375)
Q Consensus 124 q~GCnl~C~fC~~~~~~---~~r~lt~~ei~~qi~~~~~~~~i~~Ivf~GmG-EPlln-~~~l~~~i~~l~~~g~~i~~~ 198 (375)
+..|+.+|.||+-.... ....++.+||++.+..+.. .++..|.++| | .|... .+.+.++++.+++.- +..
T Consensus 67 Tn~C~~~C~fC~~~~~~~~~~~y~ls~eeI~~~a~~a~~-~G~~~i~l~~-G~~p~~~~~e~~~~~i~~ik~~~---~~i 141 (371)
T PRK07360 67 TNICEGHCGFCAFRRDEGDHGAFWLTIAEILEKAAEAVK-RGATEVCIQG-GLHPAADSLEFYLEILEAIKEEF---PDI 141 (371)
T ss_pred chhhhcCCccCCcccCCCCCCCeeCCHHHHHHHHHHHHh-CCCCEEEEcc-CCCCCCCcHHHHHHHHHHHHHhC---CCc
Confidence 38899999999875431 1124899999999988765 4788999998 8 57776 778999999998741 113
Q ss_pred eEEEE----------eCCchh--hHHHHhhhCCCceEE-EEecCCCHHHHhhhcCCCCCCCHHHHHHHHHHHHHhcCCcE
Q 017203 199 RITVS----------TVGIVH--AINKFHSDLPGLNLA-VSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKI 265 (375)
Q Consensus 199 ~itis----------TnG~~~--~i~~l~~~~~~v~la-iSL~a~~~~~r~~i~p~~~~~~~~~vl~~l~~~~~~~g~~v 265 (375)
++... +.|... .+++|.+.+.. .+. -+-...+++.|..+.|. +.+.++.++.+ +.+++.|.++
T Consensus 142 ~i~a~s~~ei~~~~~~~G~~~~e~l~~LkeAGld-~~~~t~~e~l~~~vr~~i~p~--~~s~~~~l~~i-~~a~~~Gl~~ 217 (371)
T PRK07360 142 HLHAFSPMEVYFAAREDGLSYEEVLKALKDAGLD-SMPGTAAEILVDEVRRIICPE--KIKTAEWIEIV-KTAHKLGLPT 217 (371)
T ss_pred ceeeCCHHHHHHHHhhcCCCHHHHHHHHHHcCCC-cCCCcchhhccHHHHHhhCCC--CCCHHHHHHHH-HHHHHcCCCc
Confidence 34432 457653 46788877632 221 22223356777778763 34777888888 5677888877
Q ss_pred EEEEEeeCCCCCCHHHHHHHHHHHhcCCCE----EEEeecC
Q 017203 266 FIEYIMLDGVNDEEQHAHQLGKLLETFQVV----VNLIPFN 302 (375)
Q Consensus 266 ~i~~vli~gvND~~e~~~~L~~~l~~~~~~----vnLip~n 302 (375)
.-- ++=|...+.+|..+.+.+++++... ..+||+|
T Consensus 218 ~sg--~i~G~gEt~edrv~~l~~lr~l~~~~~g~~~fIp~~ 256 (371)
T PRK07360 218 TST--MMYGHVETPEHRIDHLLILREIQQETGGITEFVPLP 256 (371)
T ss_pred eee--EEeeCCCCHHHHHHHHHHHHHhchhhCCeeEEEecc
Confidence 543 3446678999999999999988653 2456655
No 124
>COG0502 BioB Biotin synthase and related enzymes [Coenzyme metabolism]
Probab=98.81 E-value=4.9e-07 Score=87.63 Aligned_cols=208 Identities=15% Similarity=0.228 Sum_probs=136.1
Q ss_pred eEEEEeecCCCCCcCccccCCCC---Cc--ccCCCHHHHHHHHHHhhhhCCcceEEEEeCCC--cccCHHHHHHHHHHhh
Q 017203 117 STLCISSQVGCKMGCNFCATGTM---GF--KSNLSSGEIVEQLVHASRLSNIRNVVFMGMGE--PLNNYAALVEAVRIMT 189 (375)
Q Consensus 117 ~tl~vssq~GCnl~C~fC~~~~~---~~--~r~lt~~ei~~qi~~~~~~~~i~~Ivf~GmGE--Plln~~~l~~~i~~l~ 189 (375)
..+.++| .+|+-+|.||..... +. ...++.++|++....+...+-..-+..++ |+ + -..+.+.++++.++
T Consensus 52 ~ii~ikt-g~c~edC~yC~qS~~~~~~~~~~~l~~~eeIle~Ak~ak~~Ga~r~c~~aa-gr~~~-~~~~~i~~~v~~Vk 128 (335)
T COG0502 52 TLISIKT-GCCPEDCAYCSQSARYKTGVKARKLMEVEEILEAAKKAKAAGATRFCMGAA-GRGPG-RDMEEVVEAIKAVK 128 (335)
T ss_pred EEEEeec-CCCCCCCCCccccccCcCCCchhhcCCHHHHHHHHHHHHHcCCceEEEEEe-ccCCC-ccHHHHHHHHHHHH
Confidence 3455554 458999999976432 11 24588999999999887643245555555 66 4 34678999999999
Q ss_pred CC-CCCCCCCeEEEEeCCchh--hHHHHhhhCCCceEEEEecCCCHHHHhhhcCCCCCCCHHHHHHHHHHHHHhcCCcEE
Q 017203 190 GL-PFQVSPKRITVSTVGIVH--AINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIF 266 (375)
Q Consensus 190 ~~-g~~i~~~~itisTnG~~~--~i~~l~~~~~~v~laiSL~a~~~~~r~~i~p~~~~~~~~~vl~~l~~~~~~~g~~v~ 266 (375)
+. |+ .++ -|.|.+. ..++|++.+. ....--|++ +++.|.+|.|. .++++-++.+ ..+++.|..+-
T Consensus 129 ~~~~l-----e~c-~slG~l~~eq~~~L~~aGv-d~ynhNLeT-s~~~y~~I~tt---~t~edR~~tl-~~vk~~Gi~vc 196 (335)
T COG0502 129 EELGL-----EVC-ASLGMLTEEQAEKLADAGV-DRYNHNLET-SPEFYENIITT---RTYEDRLNTL-ENVREAGIEVC 196 (335)
T ss_pred HhcCc-----HHh-hccCCCCHHHHHHHHHcCh-hheeccccc-CHHHHcccCCC---CCHHHHHHHH-HHHHHcCCccc
Confidence 55 63 344 4567653 5688888763 345556777 88999999874 5899999999 56788887765
Q ss_pred EEEEeeCCCCCCHHHHHHHHHHHhcCC-CE-EEEeecCCCCCCCCCC---CCcHHHHHHHHHHHHhcCCceEEeccCCCc
Q 017203 267 IEYIMLDGVNDEEQHAHQLGKLLETFQ-VV-VNLIPFNPIGSVSQFR---TSSDDKVSSFQKILRGSYNIRTTVRKQMGQ 341 (375)
Q Consensus 267 i~~vli~gvND~~e~~~~L~~~l~~~~-~~-vnLip~np~~~~~~~~---~~s~e~i~~f~~~l~~~~Gi~v~vR~~~g~ 341 (375)
.- .|=|.+.+.+|--+++..++.+. +. |-+..|+|. +++++. +.+.-+..+.-...+ -.=-...||-+-|+
T Consensus 197 sG--gI~GlGEs~eDri~~l~~L~~l~~pdsVPIn~l~P~-~GTPle~~~~~~~~e~lk~IA~~R-i~~P~~~Ir~s~gr 272 (335)
T COG0502 197 SG--GIVGLGETVEDRAELLLELANLPTPDSVPINFLNPI-PGTPLENAKPLDPFEFLKTIAVAR-IIMPKSMIRLSAGR 272 (335)
T ss_pred cc--eEecCCCCHHHHHHHHHHHHhCCCCCeeeeeeecCC-CCCccccCCCCCHHHHHHHHHHHH-HHCCcceeEccCCc
Confidence 43 33478889999888888888776 42 555567887 566655 444433333333333 11112456655554
Q ss_pred ch
Q 017203 342 DI 343 (375)
Q Consensus 342 di 343 (375)
+.
T Consensus 273 ~~ 274 (335)
T COG0502 273 ET 274 (335)
T ss_pred cc
Confidence 43
No 125
>TIGR03550 F420_cofG 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofG subunit. This model represents either a subunit or a domain, depending on whether or not the genes are fused, of a bifunctional protein that completes the synthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin, or FO. FO is the chromophore of coenzyme F(420), involved in methanogenesis in methanogenic archaea but found in certain other lineages as well. The chromophore also occurs as a cofactor in DNA photolyases in Cyanobacteria.
Probab=98.81 E-value=2e-07 Score=91.12 Aligned_cols=192 Identities=12% Similarity=0.122 Sum_probs=122.4
Q ss_pred EEEeecCCCCCcCccccCCCCC-c--ccCCCHHHHHHHHHHhhhhCCcceEEEEeCCC-cccC----------------H
Q 017203 119 LCISSQVGCKMGCNFCATGTMG-F--KSNLSSGEIVEQLVHASRLSNIRNVVFMGMGE-PLNN----------------Y 178 (375)
Q Consensus 119 l~vssq~GCnl~C~fC~~~~~~-~--~r~lt~~ei~~qi~~~~~~~~i~~Ivf~GmGE-Plln----------------~ 178 (375)
.+|..|.||+.+|.||.-.... . ...++++||++++..+.+ .+++.|.++| |+ |-.. .
T Consensus 6 ~~i~~tn~C~~~C~fCaf~~~~g~~~~~~l~~eeI~~~a~~~~~-~G~~ei~l~~-G~~p~~~~~~~~~~l~~~~~~~~~ 83 (322)
T TIGR03550 6 VFIPLTRLCRNRCGYCTFRRPPGELEAALLSPEEVLEILRKGAA-AGCTEALFTF-GEKPEERYPEAREWLAEMGYDSTL 83 (322)
T ss_pred EEeccccCcCCCCccCCccccCCCcccccCCHHHHHHHHHHHHH-CCCCEEEEec-CCCccccHHHHHHHHHhcCCccHH
Confidence 3445569999999999865322 1 236899999999998776 4678899998 77 4332 1
Q ss_pred HHHHHHHHHhhCC-CCCCCCCeEEEEeCCchh-hHHHHhhhCCCceEEEEecCCCHHHH----hhhcCCCCCCCHHHHHH
Q 017203 179 AALVEAVRIMTGL-PFQVSPKRITVSTVGIVH-AINKFHSDLPGLNLAVSLHAPVQDVR----CQIMPAARAFPLEKLMN 252 (375)
Q Consensus 179 ~~l~~~i~~l~~~-g~~i~~~~itisTnG~~~-~i~~l~~~~~~v~laiSL~a~~~~~r----~~i~p~~~~~~~~~vl~ 252 (375)
+.+.++++.+++. + ...+++...+.+ .+..|++.+ +++.+++.+.++..+ ..+.| +...++.++
T Consensus 84 ~~~~~~~~~i~~e~~-----~~~~~~~g~lt~e~l~~Lk~aG--~~~~~~~Et~~~~l~~~~~~~~~p---~k~~~~~l~ 153 (322)
T TIGR03550 84 EYLRELCELALEETG-----LLPHTNPGVMSRDELARLKPVN--ASMGLMLETTSERLCKGEAHYGSP---GKDPAVRLE 153 (322)
T ss_pred HHHHHHHHHHHHhcC-----CccccCCCCCCHHHHHHHHhhC--CCCCcchhhhccccccccccCCCC---CCCHHHHHH
Confidence 5677777777755 4 223344333333 466777664 344555666655533 23322 223566788
Q ss_pred HHHHHHHhcCCcEEEEEEeeCCCCCCHHHHHHHHHHHhcCC-----C-EEEEeecCCCCCCCC---CCCCcHHHHHHHHH
Q 017203 253 ALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQ-----V-VVNLIPFNPIGSVSQ---FRTSSDDKVSSFQK 323 (375)
Q Consensus 253 ~l~~~~~~~g~~v~i~~vli~gvND~~e~~~~L~~~l~~~~-----~-~vnLip~np~~~~~~---~~~~s~e~i~~f~~ 323 (375)
.++ .+++.|.++..-. +=|..++.++..+.+.+++++. + .+-+.||.|. ++++ .++++..+..+...
T Consensus 154 ~i~-~a~~~Gi~~~s~~--i~G~gEt~ed~~~~l~~lr~Lq~~~~g~~~~i~~~f~P~-~gTpl~~~~~~s~~e~lr~iA 229 (322)
T TIGR03550 154 TIE-DAGRLKIPFTTGI--LIGIGETREERAESLLAIRELHERYGHIQEVIVQNFRAK-PGTPMENHPEPSLEEMLRTVA 229 (322)
T ss_pred HHH-HHHHcCCCcccee--eEeCCCCHHHHHHHHHHHHHHHHHcCCCeEEecCccccC-CCCCccCCCCCCHHHHHHHHH
Confidence 884 4567787755443 3367899999999999998775 3 3455678887 3443 34566766666655
Q ss_pred HHH
Q 017203 324 ILR 326 (375)
Q Consensus 324 ~l~ 326 (375)
+.+
T Consensus 230 v~R 232 (322)
T TIGR03550 230 VAR 232 (322)
T ss_pred HHH
Confidence 554
No 126
>PRK07379 coproporphyrinogen III oxidase; Provisional
Probab=98.80 E-value=1.6e-06 Score=87.12 Aligned_cols=203 Identities=11% Similarity=0.149 Sum_probs=130.3
Q ss_pred EEEEeecCCCCCcCccccCCCCCc---c--c-CCCH----HHHHHHHHHhhh-hCCcceEEEEeCCCcc-cCHHHHHHHH
Q 017203 118 TLCISSQVGCKMGCNFCATGTMGF---K--S-NLSS----GEIVEQLVHASR-LSNIRNVVFMGMGEPL-NNYAALVEAV 185 (375)
Q Consensus 118 tl~vssq~GCnl~C~fC~~~~~~~---~--r-~lt~----~ei~~qi~~~~~-~~~i~~Ivf~GmGEPl-ln~~~l~~~i 185 (375)
+|+|-. .=|..+|.||.-..... . + .-.. +.+.+++..... ...++.|.|-| |.|+ ++++.+.+++
T Consensus 12 ~lYiHi-PFC~~~C~YC~f~~~~~~~~~~~~~~~~~~~Y~~~L~~Ei~~~~~~~~~i~~iy~GG-GTps~l~~~~l~~ll 89 (400)
T PRK07379 12 SAYIHI-PFCRRRCFYCDFPISVVGDRTRGGTSGLIEEYVEVLCQEIAITPSFGQPLQTVFFGG-GTPSLLSVEQLERIL 89 (400)
T ss_pred EEEEEe-ccccCcCCCCCCccccccccccccccchHHHHHHHHHHHHHHhhccCCceeEEEECC-CccccCCHHHHHHHH
Confidence 444433 67999999997643211 0 1 0112 234444433221 13577888888 9999 4678899999
Q ss_pred HHhhCCCCCCC-CCeEEEEeCC--chh-hHHHHhhhCCCceEEEEecCCCHHHHhhhcCCCCCCCHHHHHHHHHHHHHhc
Q 017203 186 RIMTGLPFQVS-PKRITVSTVG--IVH-AINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNS 261 (375)
Q Consensus 186 ~~l~~~g~~i~-~~~itisTnG--~~~-~i~~l~~~~~~v~laiSL~a~~~~~r~~i~p~~~~~~~~~vl~~l~~~~~~~ 261 (375)
+.+++. +++. ...+++.+|- +.+ .++.|.+.+ ...+.|.+.+.+++..+.+ ++..+.+++.+++ +.+++.
T Consensus 90 ~~i~~~-~~~~~~~eit~E~~P~~lt~e~l~~l~~~G-vnrislGvQS~~d~~L~~l---~R~~~~~~~~~ai-~~l~~~ 163 (400)
T PRK07379 90 TTLDQR-FGIAPDAEISLEIDPGTFDLEQLQGYRSLG-VNRVSLGVQAFQDELLALC---GRSHRVKDIFAAV-DLIHQA 163 (400)
T ss_pred HHHHHh-CCCCCCCEEEEEeCCCcCCHHHHHHHHHCC-CCEEEEEcccCCHHHHHHh---CCCCCHHHHHHHH-HHHHHc
Confidence 998865 2332 2468888763 322 455666554 3578899999999998887 5678999999999 456777
Q ss_pred CCc-EEEEEEeeCC-CCCCHHHHHHHHHHHhcCCC-EEEEeecCCCCCCC---------CCCCCcHHHHHHH----HHHH
Q 017203 262 QQK-IFIEYIMLDG-VNDEEQHAHQLGKLLETFQV-VVNLIPFNPIGSVS---------QFRTSSDDKVSSF----QKIL 325 (375)
Q Consensus 262 g~~-v~i~~vli~g-vND~~e~~~~L~~~l~~~~~-~vnLip~np~~~~~---------~~~~~s~e~i~~f----~~~l 325 (375)
|.. +.+- +|-| .+.+.+++.+.++++..++. +|.+-++.+. +++ .+..|+.++..++ .+.|
T Consensus 164 G~~~v~~d--lI~GlPgqt~e~~~~tl~~~~~l~p~~is~y~L~~~-pgT~l~~~~~~g~~~~~~~~~~~~~~~~~~~~L 240 (400)
T PRK07379 164 GIENFSLD--LISGLPHQTLEDWQASLEAAIALNPTHLSCYDLVLE-PGTAFGKQYQPGKAPLPSDETTAAMYRLAQEIL 240 (400)
T ss_pred CCCeEEEE--eecCCCCCCHHHHHHHHHHHHcCCCCEEEEecceec-CCchhHHHhhcCCCCCCCHHHHHHHHHHHHHHH
Confidence 766 4443 3333 46799999999999998875 4666666554 222 3455666554444 3456
Q ss_pred HhcCCce
Q 017203 326 RGSYNIR 332 (375)
Q Consensus 326 ~~~~Gi~ 332 (375)
. +.|..
T Consensus 241 ~-~~Gy~ 246 (400)
T PRK07379 241 T-QAGYE 246 (400)
T ss_pred H-HcCCc
Confidence 5 56654
No 127
>PRK09613 thiH thiamine biosynthesis protein ThiH; Reviewed
Probab=98.77 E-value=2.1e-06 Score=87.49 Aligned_cols=206 Identities=14% Similarity=0.181 Sum_probs=137.5
Q ss_pred CCCCCcCccccCCCC-C--cccCCCHHHHHHHHHHhhhhCCcceEEEEeCCC--cccCHHHHHHHHHHhhCCCCCCC-CC
Q 017203 125 VGCKMGCNFCATGTM-G--FKSNLSSGEIVEQLVHASRLSNIRNVVFMGMGE--PLNNYAALVEAVRIMTGLPFQVS-PK 198 (375)
Q Consensus 125 ~GCnl~C~fC~~~~~-~--~~r~lt~~ei~~qi~~~~~~~~i~~Ivf~GmGE--Plln~~~l~~~i~~l~~~g~~i~-~~ 198 (375)
..|.-+|.||.-... . ....++.+||++++..+.. .+++.|.+.+ || |-...+.+.++++.+++....-+ -+
T Consensus 92 N~C~n~C~YCgfs~~n~~i~r~~Ls~EEI~~ea~~~~~-~G~~~i~Lvs-Ge~p~~~~~eyi~e~i~~I~~~~~~~g~i~ 169 (469)
T PRK09613 92 NYCVNNCVYCGFRRSNKEIKRKKLTQEEIREEVKALED-MGHKRLALVA-GEDPPNCDIEYILESIKTIYSTKHGNGEIR 169 (469)
T ss_pred CCCCCCCccCCCccCCCCCCceECCHHHHHHHHHHHHH-CCCCEEEEEe-CCCCCCCCHHHHHHHHHHHHHhccccCcce
Confidence 889999999966422 1 1246899999999988765 4678888876 66 33447789999999886310001 13
Q ss_pred eEEEEeCCch--hhHHHHhhhCCCceEEEEecCCCHHHHhhhcCCCCCCCHHHHHHHHHHHHHhcCCc-EEEEEEeeCCC
Q 017203 199 RITVSTVGIV--HAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQK-IFIEYIMLDGV 275 (375)
Q Consensus 199 ~itisTnG~~--~~i~~l~~~~~~v~laiSL~a~~~~~r~~i~p~~~~~~~~~vl~~l~~~~~~~g~~-v~i~~vli~gv 275 (375)
.++|+ -|.. ...++|.+.+. ..+.+-..+.+++++.++.|...+.+++.-+++++ .+.+.|.+ |.+=. |+ |+
T Consensus 170 ~v~in-ig~lt~eey~~LkeaGv-~~~~l~qETY~~ety~~~hp~g~k~~y~~Rl~t~~-rA~~aGi~~Vg~G~-L~-GL 244 (469)
T PRK09613 170 RVNVN-IAPTTVENYKKLKEAGI-GTYQLFQETYHKPTYEKMHPSGPKSDYDWRLTAMD-RAMEAGIDDVGIGV-LF-GL 244 (469)
T ss_pred eeEEE-eecCCHHHHHHHHHcCC-CEEEeccccCCHHHHHhcCCCCCCCCHHHHHHHHH-HHHHcCCCeeCeEE-EE-cC
Confidence 45555 2432 35677877763 45777788888999999988666778999999995 55678886 66644 33 68
Q ss_pred CCCHHHHHHHHHHHhcC------CCE-EEEeecCCCCCCCCC-C---CCcHHHHHHHHHHHHh---cCCceEEeccC
Q 017203 276 NDEEQHAHQLGKLLETF------QVV-VNLIPFNPIGSVSQF-R---TSSDDKVSSFQKILRG---SYNIRTTVRKQ 338 (375)
Q Consensus 276 ND~~e~~~~L~~~l~~~------~~~-vnLip~np~~~~~~~-~---~~s~e~i~~f~~~l~~---~~Gi~v~vR~~ 338 (375)
.+...+.-.++..++.+ +++ |.+-.++|. +++++ . +.+.+++.++...++- ..|+.++-|.+
T Consensus 245 ge~~~E~~~l~~hl~~L~~~~gvgp~tIsvprl~P~-~Gtpl~~~~~~vsd~e~lriiA~~RL~~P~~~I~lStRE~ 320 (469)
T PRK09613 245 YDYKFEVLGLLMHAEHLEERFGVGPHTISVPRLRPA-DGSDLENFPYLVSDEDFKKIVAILRLAVPYTGMILSTRES 320 (469)
T ss_pred CCCHHHHHHHHHHHHHHHHhhCCCCccccccceecC-CCCCcccCCCCCCHHHHHHHHHHHHHHCCCCCceeecCCC
Confidence 88888877777666655 333 344346777 45555 2 2467777776666541 35667666644
No 128
>COG1964 Predicted Fe-S oxidoreductases [General function prediction only]
Probab=98.76 E-value=1.8e-07 Score=92.47 Aligned_cols=153 Identities=18% Similarity=0.277 Sum_probs=108.1
Q ss_pred ccC--CCCCcccCCCHHHHHHHHHHhhhhC--CcceEEEEeCCCcccCHHHHHHHHHHhhCCCCCCCCCeEEEEeCCchh
Q 017203 134 CAT--GTMGFKSNLSSGEIVEQLVHASRLS--NIRNVVFMGMGEPLNNYAALVEAVRIMTGLPFQVSPKRITVSTVGIVH 209 (375)
Q Consensus 134 C~~--~~~~~~r~lt~~ei~~qi~~~~~~~--~i~~Ivf~GmGEPlln~~~l~~~i~~l~~~g~~i~~~~itisTnG~~~ 209 (375)
|+. ...++.-..|.++|-+.+..++... ....|.|+| |||++. +.+.++++.+++.|+ .||.+.|||+..
T Consensus 78 CFa~A~~ag~vYEpt~eqi~~Ml~~lk~e~p~~~~aIq~tG-GEPTvr-~DL~eiv~~a~e~g~----~hVqinTnGirl 151 (475)
T COG1964 78 CFAYAEEAGYIYEPTLEQIREMLRNLKKEHPVGANAVQFTG-GEPTLR-DDLIEIIKIAREEGY----DHVQLNTNGIRL 151 (475)
T ss_pred CcCchhhcCcccCCCHHHHHHHHHHHHhcCCCCCceeEecC-CCccch-hhHHHHHHHHhhcCc----cEEEEccCceee
Confidence 544 3445555677777777666655432 346899999 999997 789999999999885 799999999742
Q ss_pred ----h-HHHHhhhCCCceEEEEecCCCHHHHhhhcCCCCCCCHHHHHHHHHHHHHhcCCc-EEEEEEeeCCCCCCHHHHH
Q 017203 210 ----A-INKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQK-IFIEYIMLDGVNDEEQHAH 283 (375)
Q Consensus 210 ----~-i~~l~~~~~~v~laiSL~a~~~~~r~~i~p~~~~~~~~~vl~~l~~~~~~~g~~-v~i~~vli~gvND~~e~~~ 283 (375)
. .++|.+.+ ...|.+|.++.+++.+.+. .+.+..+++++ ++.|.. +.+--++++|+||. ++.
T Consensus 152 A~~~~~~~~l~~ag-~~tvYlsFDG~~e~~~~~~-----~~eIk~alen~----r~~g~~svVLVptl~rgvNd~--~lG 219 (475)
T COG1964 152 AFDPEYVKKLREAG-VNTVYLSFDGVTPKTNWKN-----HWEIKQALENC----RKAGLPSVVLVPTLIRGVNDH--ELG 219 (475)
T ss_pred ccCHHHHHHHHhcC-CcEEEEecCCCCCCchhhH-----hhhhHHHHHHH----HhcCCCcEEEEeehhcccChH--HHH
Confidence 2 35666665 3568899999998876554 23344444443 345544 77777889999985 799
Q ss_pred HHHHHHhcC-CC--EEEEeecCCC
Q 017203 284 QLGKLLETF-QV--VVNLIPFNPI 304 (375)
Q Consensus 284 ~L~~~l~~~-~~--~vnLip~np~ 304 (375)
.+++|+... ++ .||+.|+.-.
T Consensus 220 ~iirfa~~n~dvVrgVnfQPVslt 243 (475)
T COG1964 220 AIIRFALNNIDVVRGVNFQPVSLT 243 (475)
T ss_pred HHHHHHHhccccccccceEEEEEe
Confidence 999998743 33 2777776533
No 129
>PRK05904 coproporphyrinogen III oxidase; Provisional
Probab=98.76 E-value=2.4e-06 Score=84.48 Aligned_cols=196 Identities=10% Similarity=0.172 Sum_probs=124.3
Q ss_pred CCCCCcCccccCCCCCcccCC---CHHHHHHHHHHhh---hhCCcceEEEEeCCCccc-CHHHHHHHHHHhhCCCCCCCC
Q 017203 125 VGCKMGCNFCATGTMGFKSNL---SSGEIVEQLVHAS---RLSNIRNVVFMGMGEPLN-NYAALVEAVRIMTGLPFQVSP 197 (375)
Q Consensus 125 ~GCnl~C~fC~~~~~~~~r~l---t~~ei~~qi~~~~---~~~~i~~Ivf~GmGEPll-n~~~l~~~i~~l~~~g~~i~~ 197 (375)
.=|..+|.||.-... ..... -.+..++++.... ....++.|.|-| |-|++ ..+.+.++++.+++. +. ..
T Consensus 14 PFC~~kC~yC~f~~~-~~~~~~~~~~~~~~~~l~~ei~~~~~~~~~tiy~GG-GTPs~L~~~~l~~ll~~i~~~-~~-~~ 89 (353)
T PRK05904 14 PFCQYICTFCDFKRI-LKTPQTKKIFKDFLKNIKMHIKNFKIKQFKTIYLGG-GTPNCLNDQLLDILLSTIKPY-VD-NN 89 (353)
T ss_pred CCccCcCCCCCCeec-cCCcccHHHHHHHHHHHHHHHHHhcCCCeEEEEECC-CccccCCHHHHHHHHHHHHHh-cC-CC
Confidence 669999999976543 11110 1222333333211 113577888888 99976 667788888888764 21 22
Q ss_pred CeEEEEeCCch--h-hHHHHhhhCCCceEEEEecCCCHHHHhhhcCCCCCCCHHHHHHHHHHHHHhcCCc-EEEEEEeeC
Q 017203 198 KRITVSTVGIV--H-AINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQK-IFIEYIMLD 273 (375)
Q Consensus 198 ~~itisTnG~~--~-~i~~l~~~~~~v~laiSL~a~~~~~r~~i~p~~~~~~~~~vl~~l~~~~~~~g~~-v~i~~vli~ 273 (375)
..+++.+|.-. + .++.+.+.+ ...|.|.+.+.+++..+.+ ++..+.+++.++++ .+++.|.. +.+.+ +..
T Consensus 90 ~eitiE~nP~~lt~e~l~~lk~~G-~nrisiGvQS~~d~vL~~l---~R~~~~~~~~~ai~-~lr~~G~~~v~~dl-I~G 163 (353)
T PRK05904 90 CEFTIECNPELITQSQINLLKKNK-VNRISLGVQSMNNNILKQL---NRTHTIQDSKEAIN-LLHKNGIYNISCDF-LYC 163 (353)
T ss_pred CeEEEEeccCcCCHHHHHHHHHcC-CCEEEEecccCCHHHHHHc---CCCCCHHHHHHHHH-HHHHcCCCcEEEEE-eec
Confidence 57899988743 2 345555554 3468899999999988877 55678999999994 55667754 54433 223
Q ss_pred CCCCCHHHHHHHHHHHhcCCC-EEEEeecCCCCCCCCC----CCCcH----HHHHHHHHHHHhcCCce
Q 017203 274 GVNDEEQHAHQLGKLLETFQV-VVNLIPFNPIGSVSQF----RTSSD----DKVSSFQKILRGSYNIR 332 (375)
Q Consensus 274 gvND~~e~~~~L~~~l~~~~~-~vnLip~np~~~~~~~----~~~s~----e~i~~f~~~l~~~~Gi~ 332 (375)
..+.+.+++.+.++++..+++ ++.+-++.+. +++++ ..++. +..+...+.|+ +.|..
T Consensus 164 lPgqt~e~~~~tl~~~~~l~p~~is~y~L~~~-~gT~l~~~~~~~~~~~~~~~~~~~~~~L~-~~Gy~ 229 (353)
T PRK05904 164 LPILKLKDLDEVFNFILKHKINHISFYSLEIK-EGSILKKYHYTIDEDKEAEQLNYIKAKFN-KLNYK 229 (353)
T ss_pred CCCCCHHHHHHHHHHHHhcCCCEEEEEeeEec-CCChHhhcCCCCChHHHHHHHHHHHHHHH-HcCCc
Confidence 346789999999999998875 4666666654 23221 12332 23344455666 56764
No 130
>PRK06294 coproporphyrinogen III oxidase; Provisional
Probab=98.74 E-value=2.4e-06 Score=85.02 Aligned_cols=167 Identities=14% Similarity=0.154 Sum_probs=111.0
Q ss_pred CCCCCcCccccCCCCCcccCCCHH----HHHHH-HHHhhh---hCCcceEEEEeCCCcccC-HHHHHHHHHHhhCCCCCC
Q 017203 125 VGCKMGCNFCATGTMGFKSNLSSG----EIVEQ-LVHASR---LSNIRNVVFMGMGEPLNN-YAALVEAVRIMTGLPFQV 195 (375)
Q Consensus 125 ~GCnl~C~fC~~~~~~~~r~lt~~----ei~~q-i~~~~~---~~~i~~Ivf~GmGEPlln-~~~l~~~i~~l~~~g~~i 195 (375)
.=|.-+|.||.-...... .-..+ .++.+ +..... ...++.|.|-| |.|++- ++.+.++++.++...
T Consensus 14 PFC~~~C~yC~f~~~~~~-~~~~~~y~~~l~~E~~~~~~~~~~~~~i~~iy~GG-GTPs~l~~~~l~~ll~~i~~~~--- 88 (370)
T PRK06294 14 PFCTKKCHYCSFYTIPYK-EESVSLYCNAVLKEGLKKLAPLRCSHFIDTVFFGG-GTPSLVPPALIQDILKTLEAPH--- 88 (370)
T ss_pred CCccCcCCCCcCcccCCC-ccCHHHHHHHHHHHHHHHhhhhccCCceeEEEECC-CccccCCHHHHHHHHHHHHhCC---
Confidence 679999999965432111 11222 22333 221111 12467788888 999974 567888888886541
Q ss_pred CCCeEEEEeCCch--h-hHHHHhhhCCCceEEEEecCCCHHHHhhhcCCCCCCCHHHHHHHHHHHHHhcCCc-EEEEEEe
Q 017203 196 SPKRITVSTVGIV--H-AINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQK-IFIEYIM 271 (375)
Q Consensus 196 ~~~~itisTnG~~--~-~i~~l~~~~~~v~laiSL~a~~~~~r~~i~p~~~~~~~~~vl~~l~~~~~~~g~~-v~i~~vl 271 (375)
...|++.+|--. + .++.|.+.+ ...+.|.+.+.+++..+.+ ++..+.+++.++++ .+++.|.. |.+. +
T Consensus 89 -~~eit~E~~P~~~~~~~l~~l~~~G-~nrislGvQS~~~~~L~~l---~R~~~~~~~~~ai~-~~~~~g~~~v~~D--l 160 (370)
T PRK06294 89 -ATEITLEANPENLSESYIRALALTG-INRISIGVQTFDDPLLKLL---GRTHSSSKAIDAVQ-ECSEHGFSNLSID--L 160 (370)
T ss_pred -CCeEEEEeCCCCCCHHHHHHHHHCC-CCEEEEccccCCHHHHHHc---CCCCCHHHHHHHHH-HHHHcCCCeEEEE--e
Confidence 256889988632 2 355555554 3578899999999988877 56678999999994 56677764 5444 3
Q ss_pred eCC-CCCCHHHHHHHHHHHhcCCC-EEEEeecCCC
Q 017203 272 LDG-VNDEEQHAHQLGKLLETFQV-VVNLIPFNPI 304 (375)
Q Consensus 272 i~g-vND~~e~~~~L~~~l~~~~~-~vnLip~np~ 304 (375)
|-| ..++.+++.+.++++..+++ ++.+-++.+.
T Consensus 161 i~GlPgqt~~~~~~~l~~~~~l~~~~is~y~l~~~ 195 (370)
T PRK06294 161 IYGLPTQSLSDFIVDLHQAITLPITHISLYNLTID 195 (370)
T ss_pred ecCCCCCCHHHHHHHHHHHHccCCCeEEEeeeEec
Confidence 444 56789999999999988875 4666665554
No 131
>PRK08444 hypothetical protein; Provisional
Probab=98.74 E-value=1.3e-06 Score=86.20 Aligned_cols=193 Identities=16% Similarity=0.182 Sum_probs=122.8
Q ss_pred cCCCCCcCccccCCCC---CcccCCCHHHHHHHHHHhhhhCCcceEEEEeCCCcccCHHHHHHHHHHhhCCCCCCCCCeE
Q 017203 124 QVGCKMGCNFCATGTM---GFKSNLSSGEIVEQLVHASRLSNIRNVVFMGMGEPLNNYAALVEAVRIMTGLPFQVSPKRI 200 (375)
Q Consensus 124 q~GCnl~C~fC~~~~~---~~~r~lt~~ei~~qi~~~~~~~~i~~Ivf~GmGEPlln~~~l~~~i~~l~~~g~~i~~~~i 200 (375)
+..|..+|.||+-... .....++.+||++.+..+.. .+++.|.+.|-+-|...++.+.++++.+++.- +..++
T Consensus 56 TN~C~~~C~FCaf~~~~~~~~~y~ls~eeI~~~a~~a~~-~G~~ei~iv~G~~p~~~~e~y~e~ir~Ik~~~---p~i~i 131 (353)
T PRK08444 56 TNICADVCKFCAFSAHRKNPNPYTMSHEEILEIVKNSVK-RGIKEVHIVSAHNPNYGYEWYLEIFKKIKEAY---PNLHV 131 (353)
T ss_pred ccccccCCccCCCccCCCCCccccCCHHHHHHHHHHHHH-CCCCEEEEeccCCCCCCHHHHHHHHHHHHHHC---CCceE
Confidence 4889999999977431 11235899999999998765 57888888884567777788999999999751 22445
Q ss_pred EEE----------eCCch--hhHHHHhhhCCCceEEE-EecCCCHHHHhhhcCCCCCCCHHHHHHHHHHHHHhcCCcEEE
Q 017203 201 TVS----------TVGIV--HAINKFHSDLPGLNLAV-SLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFI 267 (375)
Q Consensus 201 tis----------TnG~~--~~i~~l~~~~~~v~lai-SL~a~~~~~r~~i~p~~~~~~~~~vl~~l~~~~~~~g~~v~i 267 (375)
..- ..|.. ..+.+|.+.+.. .+.- +..-.+++.|..|.|. +.+.++.++.+ +.+++.|.+++-
T Consensus 132 ~a~s~~Ei~~~a~~~g~~~~e~l~~LkeAGl~-~~~g~~aEi~~~~vr~~I~p~--k~~~~~~~~i~-~~a~~~Gi~~~s 207 (353)
T PRK08444 132 KAMTAAEVDFLSRKFGKSYEEVLEDMLEYGVD-SMPGGGAEIFDEEVRKKICKG--KVSSERWLEIH-KYWHKKGKMSNA 207 (353)
T ss_pred eeCCHHHHHHHHHHcCCCHHHHHHHHHHhCcc-cCCCCCchhcCHHHHhhhCCC--CCCHHHHHHHH-HHHHHcCCCccc
Confidence 541 23332 235666666531 1111 1222378889999874 34567777776 455677877753
Q ss_pred EEEeeCCCCCCHHHHHHHHHHHhcCCCE---E-EEee--cCCCC-CCCCCCCCcHHHHHHHHHHHH
Q 017203 268 EYIMLDGVNDEEQHAHQLGKLLETFQVV---V-NLIP--FNPIG-SVSQFRTSSDDKVSSFQKILR 326 (375)
Q Consensus 268 ~~vli~gvND~~e~~~~L~~~l~~~~~~---v-nLip--~np~~-~~~~~~~~s~e~i~~f~~~l~ 326 (375)
.++=|.-++.+|.-+.+..++++... + .+|| |.|.+ +....++++..+..+...+.+
T Consensus 208 --g~l~G~gEt~edrv~hl~~Lr~Lq~~t~gf~~fIp~~f~~~~t~l~~~~~~~~~e~Lr~iAi~R 271 (353)
T PRK08444 208 --TMLFGHIENREHRIDHMLRLRDLQDKTGGFNAFIPLVYQRENNYLKVEKFPSSQEILKTIAISR 271 (353)
T ss_pred --eeEEecCCCHHHHHHHHHHHHHhccccCCceEEEecccCCCCCcCCCCCCCCHHHHHHHHHHHH
Confidence 33446668888888888888887642 2 2444 44432 222345567777666665554
No 132
>PRK01254 hypothetical protein; Provisional
Probab=98.73 E-value=9.4e-07 Score=92.05 Aligned_cols=179 Identities=14% Similarity=0.257 Sum_probs=116.4
Q ss_pred CCCCCceEEEEeecCCCCCcCccccCCCC-Cc-ccCCCHHHHHHHHHHhhh-hCCcceEE---------EEeC--CC---
Q 017203 111 RPGGPRSTLCISSQVGCKMGCNFCATGTM-GF-KSNLSSGEIVEQLVHASR-LSNIRNVV---------FMGM--GE--- 173 (375)
Q Consensus 111 ~~~~~r~tl~vssq~GCnl~C~fC~~~~~-~~-~r~lt~~ei~~qi~~~~~-~~~i~~Iv---------f~Gm--GE--- 173 (375)
.|.-......|.++.||+.+|.||+.+.. |. .+..+.++|++++..... ..+..+++ +.|+ ..
T Consensus 366 ipA~e~i~~sV~i~RGC~g~CSFCaI~~hqGr~irSRS~esIL~Ea~~L~~~~pGfKgii~DLgGptaN~YG~~c~d~~~ 445 (707)
T PRK01254 366 IPAYDMIRFSVNIMRGCFGGCSFCSITEHEGRIIQSRSEESIINEIEAIRDKVPGFTGVISDLGGPTANMYRLRCKSPRA 445 (707)
T ss_pred CCchhheEEEEEEccCCCCCCCccccccccCCeeeeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCcccccccccccccc
Confidence 45555566788888999999999988643 32 367889999999988764 33455555 4443 11
Q ss_pred ---------------c-c-cCHHHHHHHHHHhhCC-CCCCCCCeEEEEeCCc----h---h-hHHHHhhhCCCceEEEEe
Q 017203 174 ---------------P-L-NNYAALVEAVRIMTGL-PFQVSPKRITVSTVGI----V---H-AINKFHSDLPGLNLAVSL 227 (375)
Q Consensus 174 ---------------P-l-ln~~~l~~~i~~l~~~-g~~i~~~~itisTnG~----~---~-~i~~l~~~~~~v~laiSL 227 (375)
+ | .+...+.++++.+++. |+ .++.|. .|+ . + -++.+++....-.|-|-+
T Consensus 446 ~~~C~~~~Cl~P~~C~nL~~dh~~l~eLLrkLr~IpGV----KkVrI~-SgiR~Dl~l~d~elIeel~~~hV~g~LkVpp 520 (707)
T PRK01254 446 EQTCRRLSCVYPDICPHLDTDHEPTINLYRRARDLKGI----KKILIA-SGVRYDLAVEDPRYVKELVTHHVGGYLKIAP 520 (707)
T ss_pred ccccccccccCcccccccCCCHHHHHHHHHHHHhCCCc----eEEEEE-cCCCccccccCHHHHHHHHHhCCcccccccc
Confidence 1 1 1224688899999874 52 345444 332 1 1 245555532111356667
Q ss_pred cCCCHHHHhhhcCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEEeeCC-CCCCHHHHHHHHHHHhcCCCE
Q 017203 228 HAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDG-VNDEEQHAHQLGKLLETFQVV 295 (375)
Q Consensus 228 ~a~~~~~r~~i~p~~~~~~~~~vl~~l~~~~~~~g~~v~i~~vli~g-vND~~e~~~~L~~~l~~~~~~ 295 (375)
.+.+++.-+ .|.....+.+++..+.++++.++.+..+.+...+|-| .+++++++++|++|++.++..
T Consensus 521 EH~Sd~VLk-~M~Kp~~~~~e~F~e~f~rirk~~gk~q~LipyfIvGhPGeTeeDf~eLaefLkel~f~ 588 (707)
T PRK01254 521 EHTEEGPLS-KMMKPGMGSYDRFKELFDKYSKEAGKEQYLIPYFISAHPGTTDEDMVNLALWLKKNRFR 588 (707)
T ss_pred ccCCHHHHH-HhCCCCcccHHHHHHHHHHHHHHCCCCeEEEEeEEEECCCCCHHHHHHHHHHHHHhCCC
Confidence 777776644 4543333678888888888878888766654444444 788999999999999998754
No 133
>PRK05927 hypothetical protein; Provisional
Probab=98.71 E-value=5.5e-07 Score=88.80 Aligned_cols=194 Identities=18% Similarity=0.171 Sum_probs=121.6
Q ss_pred CCCCCcCccccCCCCC--cc-cCCCHHHHHHHHHHhhhhCCcceEEEEeCCCc-ccCHHHHHHHHHHhhCC--CCCC---
Q 017203 125 VGCKMGCNFCATGTMG--FK-SNLSSGEIVEQLVHASRLSNIRNVVFMGMGEP-LNNYAALVEAVRIMTGL--PFQV--- 195 (375)
Q Consensus 125 ~GCnl~C~fC~~~~~~--~~-r~lt~~ei~~qi~~~~~~~~i~~Ivf~GmGEP-lln~~~l~~~i~~l~~~--g~~i--- 195 (375)
..|+.+|.||+-.... .. ..++.+||++.+..+.. .++..|.|+| |+. -.-.+.+.++++.+++. ++.+
T Consensus 53 n~C~~~C~fCaf~~~~~~~~~y~ls~eei~~~a~~~~~-~G~~~i~i~g-G~~p~~~~e~~~~~i~~ik~~~p~l~~~~~ 130 (350)
T PRK05927 53 NICKIDCTFCAFYRKPHSSDAYLLSFDEFRSLMQRYVS-AGVKTVLLQG-GVHPQLGIDYLEELVRITVKEFPSLHPHFF 130 (350)
T ss_pred hhhhcCCccCCccCCCCCccccccCHHHHHHHHHHHHH-CCCCEEEEeC-CCCCCCCHHHHHHHHHHHHHHCCCCcccCC
Confidence 7899999999875321 11 26899999999998766 4678899999 884 45577899999999865 2211
Q ss_pred CCCeE--EEEeCCchh--hHHHHhhhCCCceEE-EEecCCCHHHHhhhcCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEE
Q 017203 196 SPKRI--TVSTVGIVH--AINKFHSDLPGLNLA-VSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYI 270 (375)
Q Consensus 196 ~~~~i--tisTnG~~~--~i~~l~~~~~~v~la-iSL~a~~~~~r~~i~p~~~~~~~~~vl~~l~~~~~~~g~~v~i~~v 270 (375)
+...+ .-.+.|... .+.+|.+.+. ..+- --+...++..|..+.|. +++.++-++.+ +.+++.|.+++--
T Consensus 131 s~~ei~~~~~~~G~~~~e~l~~Lk~aGl-~~l~g~~~Et~~~~~~~~~~p~--k~~~~~rl~~i-~~A~~lGi~~~sg-- 204 (350)
T PRK05927 131 SAVEIAHAAQVSGISTEQALERLWDAGQ-RTIPGGGAEILSERVRKIISPK--KMGPDGWIQFH-KLAHRLGFRSTAT-- 204 (350)
T ss_pred CHHHHHHHHHhcCCCHHHHHHHHHHcCc-ccCCCCCchhCCHHHhhccCCC--CCCHHHHHHHH-HHHHHcCCCcCce--
Confidence 00000 012357653 4567776653 1111 13445677888888763 45668888888 4567778776543
Q ss_pred eeCCCCCCHHHHHHHHHHHhcCCC----EEEEeecCCCCCCCCC----C-CCcHHHHHHHHHHHH
Q 017203 271 MLDGVNDEEQHAHQLGKLLETFQV----VVNLIPFNPIGSVSQF----R-TSSDDKVSSFQKILR 326 (375)
Q Consensus 271 li~gvND~~e~~~~L~~~l~~~~~----~vnLip~np~~~~~~~----~-~~s~e~i~~f~~~l~ 326 (375)
++=|..++.++.-+.+..++++.. -..+||+.+...++++ + +++.++..+...+.+
T Consensus 205 ~l~G~gEt~e~ri~~l~~Lr~lqd~~~gf~~fIp~~~~~~~tpl~~~~~~~~s~~e~Lr~iAv~R 269 (350)
T PRK05927 205 MMFGHVESPEDILLHLQTLRDAQDENPGFYSFIPWSYKPGNTALGRRVPHQASPELYYRILAVAR 269 (350)
T ss_pred eEEeeCCCHHHHHHHHHHHHHhhHhhCCeeeeeecCcCCCCCccccCCCCCCCHHHHHHHHHHHH
Confidence 333667788888887777776642 2456665443222322 1 466666666655554
No 134
>PRK09058 coproporphyrinogen III oxidase; Provisional
Probab=98.69 E-value=5.4e-06 Score=84.60 Aligned_cols=198 Identities=13% Similarity=0.190 Sum_probs=127.8
Q ss_pred CCCCCcCccccCCCCCccc---CCCHHHHHHHHHHhhhh-----CCcceEEEEeCCCccc-CHHHHHHHHHHhhCC-CCC
Q 017203 125 VGCKMGCNFCATGTMGFKS---NLSSGEIVEQLVHASRL-----SNIRNVVFMGMGEPLN-NYAALVEAVRIMTGL-PFQ 194 (375)
Q Consensus 125 ~GCnl~C~fC~~~~~~~~r---~lt~~ei~~qi~~~~~~-----~~i~~Ivf~GmGEPll-n~~~l~~~i~~l~~~-g~~ 194 (375)
.=|+.+|.||.-.+..... .--.+.+++++...... ..++.|.|-| |-|++ ..+.+.++++.+++. .+.
T Consensus 69 PFC~~~C~yC~f~~~~~~~~~~~~Y~~~L~~Ei~~~~~~~~~~~~~i~~iy~GG-GTPs~L~~~~l~~ll~~i~~~~~l~ 147 (449)
T PRK09058 69 PFCRTHCTFCGFFQNAWNPEAVARYTDALIRELAMEADSPLTQSAPIHAVYFGG-GTPTALSAEDLARLITALREYLPLA 147 (449)
T ss_pred CCcCCcCCCCCCcCcCCchhhHHHHHHHHHHHHHHHhhccccCCCeeeEEEECC-CccccCCHHHHHHHHHHHHHhCCCC
Confidence 5599999999754322111 11334555665543321 2467888888 99995 677888888888764 322
Q ss_pred CCCCeEEEEeCC--chh-hHHHHhhhCCCceEEEEecCCCHHHHhhhcCCCCCCCHHHHHHHHHHHHHhcC-CcEEEEEE
Q 017203 195 VSPKRITVSTVG--IVH-AINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQ-QKIFIEYI 270 (375)
Q Consensus 195 i~~~~itisTnG--~~~-~i~~l~~~~~~v~laiSL~a~~~~~r~~i~p~~~~~~~~~vl~~l~~~~~~~g-~~v~i~~v 270 (375)
....+++.+|= +.+ .+..+.+.+ ...+.|.+.+.+++.++.+ ++..+.+++.++++ .+++.| ..|.+-.
T Consensus 148 -~~~eitiE~~p~~~t~e~l~~l~~aG-vnRiSiGVQSf~d~vLk~l---gR~~~~~~~~~~i~-~l~~~g~~~v~~Dl- 220 (449)
T PRK09058 148 -PDCEITLEGRINGFDDEKADAALDAG-ANRFSIGVQSFNTQVRRRA---GRKDDREEVLARLE-ELVARDRAAVVCDL- 220 (449)
T ss_pred -CCCEEEEEeCcCcCCHHHHHHHHHcC-CCEEEecCCcCCHHHHHHh---CCCCCHHHHHHHHH-HHHhCCCCcEEEEE-
Confidence 12468888763 222 445555554 3568899999999998887 56678999999995 455666 4455443
Q ss_pred eeCCCCCCHHHHHHHHHHHhcCCC-EEEEeecCCCCCCC---------CCCCC-cHHHHHHH----HHHHHhcCCce
Q 017203 271 MLDGVNDEEQHAHQLGKLLETFQV-VVNLIPFNPIGSVS---------QFRTS-SDDKVSSF----QKILRGSYNIR 332 (375)
Q Consensus 271 li~gvND~~e~~~~L~~~l~~~~~-~vnLip~np~~~~~---------~~~~~-s~e~i~~f----~~~l~~~~Gi~ 332 (375)
+..-.+++.++..+-++++..++. +|.+-++.+. +++ .++.| +.++..++ .+.|. +.|..
T Consensus 221 I~GlPgqT~e~~~~~l~~~~~l~~~~is~y~L~~~-pgT~l~~~~~~g~l~~~~~~~~~~~my~~~~~~L~-~~Gy~ 295 (449)
T PRK09058 221 IFGLPGQTPEIWQQDLAIVRDLGLDGVDLYALNLL-PGTPLAKAVEKGKLPPPATPAERADMYAYGVEFLA-KAGWR 295 (449)
T ss_pred EeeCCCCCHHHHHHHHHHHHhcCCCEEEEeccccC-CCCHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHH-HCCCe
Confidence 333346788999999999988875 4777777765 222 24444 55544444 44566 57765
No 135
>COG1032 Fe-S oxidoreductase [Energy production and conversion]
Probab=98.66 E-value=7.6e-07 Score=90.79 Aligned_cols=186 Identities=14% Similarity=0.275 Sum_probs=109.6
Q ss_pred eEEEEeecCCCCCcCccccCCCCCcccCCCHHHHHHHHHHhhhhC--C----cceEEEEeCCCcccCHHHHHHHHHHhhC
Q 017203 117 STLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLS--N----IRNVVFMGMGEPLNNYAALVEAVRIMTG 190 (375)
Q Consensus 117 ~tl~vssq~GCnl~C~fC~~~~~~~~r~lt~~ei~~qi~~~~~~~--~----i~~Ivf~GmGEPlln~~~l~~~i~~l~~ 190 (375)
..+.|.++.||+.+|.||..+.....|..+.+.+++++....+.. . .+.+.+.| +..+.+...+..+...+.+
T Consensus 198 ~~~~ve~~RGCp~~C~FC~~~~~~~~r~~~~~~v~~ei~~~~~~~~~~~~~~~~~~f~~~-~~~~~~~~~~~~l~~~~~~ 276 (490)
T COG1032 198 RAFSVETSRGCPRGCRFCSITKHFKYRRRRPERVVEEIKELIEEGGKRVVFFVDDIFLYG-SPALNDEKRFELLSLELIE 276 (490)
T ss_pred eEEEEEeccCCCCCCCCCCCcccccccCCCHHHHHHHHHHHHHHhhhcCcccccceeecC-CccccchhhcccchHHHHH
Confidence 356677779999999999998653346777888888877643311 1 12334444 3322332333333223333
Q ss_pred CCCC-CCCCeEEEE---eCCch-hhHHHHhhhCCCceEEEEecCCCHHHHhhhcCCCCCCCHHHHHH-HHHHHHHhcCCc
Q 017203 191 LPFQ-VSPKRITVS---TVGIV-HAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMN-ALKEYQKNSQQK 264 (375)
Q Consensus 191 ~g~~-i~~~~itis---TnG~~-~~i~~l~~~~~~v~laiSL~a~~~~~r~~i~p~~~~~~~~~vl~-~l~~~~~~~g~~ 264 (375)
.++. ....++++. ++=.. ..+.++.+......+.+.+.+.+++.++.+ ++..+.+.+++ ++ ....+.+.+
T Consensus 277 ~~~~~~~~~~~~~~~~r~d~~~~~~~~~~~~~~g~~~~~iG~Esgs~~~l~~~---~k~~~~~~~~~~a~-~~~~~~~~~ 352 (490)
T COG1032 277 RGLRKGCRVHISAPSLRADTVTDEELLKLLREAGLRRVYIGIESGSEELLKKI---NKGITTEEVLEEAV-KIAKEHGLR 352 (490)
T ss_pred HhcccCceeeeeccccCchhcCHHHHHHHHhhCCCcceEEeccCCCHHHHHHH---hCCCChHHHHHHHH-HHHHhCCce
Confidence 3220 111223333 11111 223344444334568899999999999987 45678888885 66 566777776
Q ss_pred EEEEEE-eeCCCCCCHHHHHHH---HHHHhcCCCE--EEEeecCCCCCCCCC
Q 017203 265 IFIEYI-MLDGVNDEEQHAHQL---GKLLETFQVV--VNLIPFNPIGSVSQF 310 (375)
Q Consensus 265 v~i~~v-li~gvND~~e~~~~L---~~~l~~~~~~--vnLip~np~~~~~~~ 310 (375)
+.+.++ -+|| ++.+++.+. +++++..+.. +...+|.|. +++.+
T Consensus 353 ~~~~~i~G~pg--et~ed~~~t~~~~~~~~~~~~~~~~~~~~~~p~-p~t~~ 401 (490)
T COG1032 353 VKLYFIVGLPG--ETEEDVKETIELAKFIKKLGPKLYVSPSPFVPL-PGTPL 401 (490)
T ss_pred eeEEEEEcCCC--CCHHHHHHHHHHHHHHHHhCccceEEEeeeeCC-CCCch
Confidence 665443 3344 566777776 7888887765 777788887 44443
No 136
>PRK09057 coproporphyrinogen III oxidase; Provisional
Probab=98.65 E-value=9.6e-06 Score=81.06 Aligned_cols=196 Identities=10% Similarity=0.126 Sum_probs=125.6
Q ss_pred CCCCCcCccccCCCCCcccCCC----HHHHHHHHHHhhhh---CCcceEEEEeCCCccc-CHHHHHHHHHHhhCCCCCCC
Q 017203 125 VGCKMGCNFCATGTMGFKSNLS----SGEIVEQLVHASRL---SNIRNVVFMGMGEPLN-NYAALVEAVRIMTGLPFQVS 196 (375)
Q Consensus 125 ~GCnl~C~fC~~~~~~~~r~lt----~~ei~~qi~~~~~~---~~i~~Ivf~GmGEPll-n~~~l~~~i~~l~~~g~~i~ 196 (375)
.=|.-+|.||.-......+ .. .+.+.+++...... ..+..|.|-| |-|++ +++.+.++++.+++. +.+.
T Consensus 12 PFC~~kC~yC~f~~~~~~~-~~~~~Y~~aL~~Ei~~~~~~~~~~~i~tiy~GG-GTPs~l~~~~L~~ll~~i~~~-f~~~ 88 (380)
T PRK09057 12 PFCLAKCPYCDFNSHVRHA-IDQARFAAAFLRELATEAARTGPRTLTSIFFGG-GTPSLMQPETVAALLDAIARL-WPVA 88 (380)
T ss_pred CCcCCcCCCCCCcccCcCc-CCHHHHHHHHHHHHHHHHHHcCCCCcCeEEeCC-CccccCCHHHHHHHHHHHHHh-CCCC
Confidence 6699999999764332112 22 33444455433221 3578899999 99996 466788888888764 2222
Q ss_pred C-CeEEEEeCCch---hhHHHHhhhCCCceEEEEecCCCHHHHhhhcCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEEee
Q 017203 197 P-KRITVSTVGIV---HAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIML 272 (375)
Q Consensus 197 ~-~~itisTnG~~---~~i~~l~~~~~~v~laiSL~a~~~~~r~~i~p~~~~~~~~~vl~~l~~~~~~~g~~v~i~~vli 272 (375)
. ..+++.+|--. ..++.|.+.+ ...|.|.+.+.+++..+.+ ++..+.+++.++++. +++.+..|.+ -+|
T Consensus 89 ~~~eit~E~~P~~i~~e~L~~l~~~G-vnrislGvQS~~d~vL~~l---~R~~~~~~~~~ai~~-~~~~~~~v~~--dli 161 (380)
T PRK09057 89 DDIEITLEANPTSVEAGRFRGYRAAG-VNRVSLGVQALNDADLRFL---GRLHSVAEALAAIDL-AREIFPRVSF--DLI 161 (380)
T ss_pred CCccEEEEECcCcCCHHHHHHHHHcC-CCEEEEecccCCHHHHHHc---CCCCCHHHHHHHHHH-HHHhCccEEE--Eee
Confidence 2 46888887622 2456666654 3568899999999988777 567889999999954 4555554444 445
Q ss_pred CC-CCCCHHHHHHHHHHHhcCCC-EEEEeecCCCCCC---------CCCCCCcHHH----HHHHHHHHHhcCCce
Q 017203 273 DG-VNDEEQHAHQLGKLLETFQV-VVNLIPFNPIGSV---------SQFRTSSDDK----VSSFQKILRGSYNIR 332 (375)
Q Consensus 273 ~g-vND~~e~~~~L~~~l~~~~~-~vnLip~np~~~~---------~~~~~~s~e~----i~~f~~~l~~~~Gi~ 332 (375)
-| .+.+.++..+-++.+..+++ +|.+-++.+. ++ ..+..|+.++ .....+.|+ ..|+.
T Consensus 162 ~GlPgqt~~~~~~~l~~~~~l~p~~is~y~L~~~-~gT~l~~~~~~g~~~~~~~~~~~~~~~~~~~~L~-~~G~~ 234 (380)
T PRK09057 162 YARPGQTLAAWRAELKEALSLAADHLSLYQLTIE-EGTAFYGLHAAGKLILPDEDLAADLYELTQEITA-AAGLP 234 (380)
T ss_pred cCCCCCCHHHHHHHHHHHHhcCCCeEEeecceec-CCChHHHHHhcCCCCCCChHHHHHHHHHHHHHHH-HcCCc
Confidence 45 36788888777777667765 4776666654 22 2345566653 344455666 56763
No 137
>PRK05926 hypothetical protein; Provisional
Probab=98.64 E-value=1.2e-06 Score=87.11 Aligned_cols=160 Identities=13% Similarity=0.087 Sum_probs=110.0
Q ss_pred cCCCCCcCccccCCCC---CcccCCCHHHHHHHHHHhhhhCCcceEEEEeCCCc-ccCHHHHHHHHHHhhCCCCCCCCCe
Q 017203 124 QVGCKMGCNFCATGTM---GFKSNLSSGEIVEQLVHASRLSNIRNVVFMGMGEP-LNNYAALVEAVRIMTGLPFQVSPKR 199 (375)
Q Consensus 124 q~GCnl~C~fC~~~~~---~~~r~lt~~ei~~qi~~~~~~~~i~~Ivf~GmGEP-lln~~~l~~~i~~l~~~g~~i~~~~ 199 (375)
+..|..+|.||+-... .....++.+||++.+..+ . .+++.|.+.| |+. -+.++.+.++++.+++.- +..+
T Consensus 75 Tn~C~~dC~FCaf~~~~~~~~~~~ls~eeI~~~a~~a-~-~G~~ei~iv~-G~~p~~~~e~~~e~i~~Ik~~~---p~i~ 148 (370)
T PRK05926 75 TNFCQFNCTFCSFYAKPGDPKGWFYTPDQLVQSIKEN-P-SPITETHIVA-GCFPSCNLAYYEELFSKIKQNF---PDLH 148 (370)
T ss_pred CCCCCCCCCccccccCCCCcccccCCHHHHHHHHHHH-h-cCCCEEEEEe-CcCCCCCHHHHHHHHHHHHHhC---CCee
Confidence 4889999999985432 122358899999999887 4 4688888888 775 345778999999998762 1234
Q ss_pred EEEEeC----------Cch-h-hHHHHhhhCCCceEEE-EecCCCHHHHhhhcCCCCCCCHHHHHHHHHHHHHhcCCcEE
Q 017203 200 ITVSTV----------GIV-H-AINKFHSDLPGLNLAV-SLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIF 266 (375)
Q Consensus 200 itisTn----------G~~-~-~i~~l~~~~~~v~lai-SL~a~~~~~r~~i~p~~~~~~~~~vl~~l~~~~~~~g~~v~ 266 (375)
+...|- |.. . .+++|.+.+. ..+.- .....+++.|+.+.|. +.+.++.++.+ +.+++.|.++.
T Consensus 149 i~a~s~~Ei~~~~~~~~~~~~e~l~~LkeAGl-~~~~g~GaEi~~e~~r~~~~p~--~~t~~e~l~~i-~~a~~~Gi~~~ 224 (370)
T PRK05926 149 IKALTAIEYAYLSKLDNLPVKEVLQTLKIAGL-DSIPGGGAEILVDEIRETLAPG--RLSSQGFLEIH-KTAHSLGIPSN 224 (370)
T ss_pred EEECCHHHHHHHHhhcCCCHHHHHHHHHHcCc-CccCCCCchhcCHHHHHhhCCC--CCCHHHHHHHH-HHHHHcCCccc
Confidence 443331 222 2 3567777653 12221 2444578889888773 45778888999 56788898887
Q ss_pred EEEEeeCCCCCCHHHHHHHHHHHhcCCCE
Q 017203 267 IEYIMLDGVNDEEQHAHQLGKLLETFQVV 295 (375)
Q Consensus 267 i~~vli~gvND~~e~~~~L~~~l~~~~~~ 295 (375)
.- ++-|...+.+|.-+.+..++++...
T Consensus 225 sg--mi~G~gEt~edrv~~l~~Lr~Lq~~ 251 (370)
T PRK05926 225 AT--MLCYHRETPEDIVTHMSKLRALQDK 251 (370)
T ss_pred Cc--eEEeCCCCHHHHHHHHHHHHhcCCc
Confidence 76 4445667889999999999988653
No 138
>COG1533 SplB DNA repair photolyase [DNA replication, recombination, and repair]
Probab=98.62 E-value=3.3e-06 Score=81.38 Aligned_cols=165 Identities=15% Similarity=0.214 Sum_probs=112.2
Q ss_pred EEeecCCCCCcCccccCCCCCcc-----cCCCHHH-HHHHHHHhhh--hCCcceEEEEeCCCcccCHHH----HHHHHHH
Q 017203 120 CISSQVGCKMGCNFCATGTMGFK-----SNLSSGE-IVEQLVHASR--LSNIRNVVFMGMGEPLNNYAA----LVEAVRI 187 (375)
Q Consensus 120 ~vssq~GCnl~C~fC~~~~~~~~-----r~lt~~e-i~~qi~~~~~--~~~i~~Ivf~GmGEPlln~~~----l~~~i~~ 187 (375)
-+.+-.||..+|.||+...+... ..+.+.+ +++.+.+-.. ..+...|.++.+-+|..-.+. ....++.
T Consensus 32 ~inpy~GC~h~C~YCYa~~~~~~~~~~~~~v~vk~n~~e~l~~el~~~~~k~~~i~is~~TDpyqp~E~~~~ltR~ilei 111 (297)
T COG1533 32 TLNPYRGCSHGCIYCYARPMHGYLPKSPTKVNVKENLLELLERELRKPGPKRTVIAISSVTDPYQPIEKEYRLTRKILEI 111 (297)
T ss_pred ecCCcCCCCCCCceeecccccccccCCCceeeechhHHHHHHHHHhhccCCceEEEEecCCCCCCcchHHHHHHHHHHHH
Confidence 34556999999999988543221 2335555 6666654321 234567888888999986332 3334444
Q ss_pred hhCCCCCCCCCeEEEEeCCch--hhHHHH---hhhCCCceEEEEecCCCHHHHhhhcCCCCCCCHHHHHHHHHHHHHhcC
Q 017203 188 MTGLPFQVSPKRITVSTVGIV--HAINKF---HSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQ 262 (375)
Q Consensus 188 l~~~g~~i~~~~itisTnG~~--~~i~~l---~~~~~~v~laiSL~a~~~~~r~~i~p~~~~~~~~~vl~~l~~~~~~~g 262 (375)
+...| .++.|.|=+.+ ..+.-| +... .++++||+...+++.++.+=|.+ -+.++=+++++ .+.+.|
T Consensus 112 ~~~~~-----~~v~I~TKS~lv~RDld~l~~~~~~~-~v~V~~Sitt~d~~l~k~~EP~a--psp~~Ri~al~-~l~eaG 182 (297)
T COG1533 112 LLKYG-----FPVSIVTKSALVLRDLDLLLELAERG-KVRVAVSITTLDEELAKILEPRA--PSPEERLEALK-ELSEAG 182 (297)
T ss_pred HHHcC-----CcEEEEECCcchhhhHHHHHhhhhcc-ceEEEEEeecCcHHHHHhcCCCC--cCHHHHHHHHH-HHHHCC
Confidence 44445 56999997643 123333 3332 37899999998888888887753 47888899995 457889
Q ss_pred CcEEEEE-EeeCCCCCCHHHHHHHHHHHhcCCCE
Q 017203 263 QKIFIEY-IMLDGVNDEEQHAHQLGKLLETFQVV 295 (375)
Q Consensus 263 ~~v~i~~-vli~gvND~~e~~~~L~~~l~~~~~~ 295 (375)
.++.+.+ ++||++|| ++++++..-+...++.
T Consensus 183 i~~~v~v~PIiP~~~d--~e~e~~l~~~~~ag~~ 214 (297)
T COG1533 183 IPVGLFVAPIIPGLND--EELERILEAAAEAGAR 214 (297)
T ss_pred CeEEEEEecccCCCCh--HHHHHHHHHHHHcCCC
Confidence 9987766 89999998 7899988877777654
No 139
>PRK08898 coproporphyrinogen III oxidase; Provisional
Probab=98.60 E-value=1.5e-05 Score=80.14 Aligned_cols=197 Identities=13% Similarity=0.150 Sum_probs=125.5
Q ss_pred CCCCCcCccccCCCCCccc--CCCHH----HHHHHHHHhhh---hCCcceEEEEeCCCccc-CHHHHHHHHHHhhCCCCC
Q 017203 125 VGCKMGCNFCATGTMGFKS--NLSSG----EIVEQLVHASR---LSNIRNVVFMGMGEPLN-NYAALVEAVRIMTGLPFQ 194 (375)
Q Consensus 125 ~GCnl~C~fC~~~~~~~~r--~lt~~----ei~~qi~~~~~---~~~i~~Ivf~GmGEPll-n~~~l~~~i~~l~~~g~~ 194 (375)
.=|+-+|.||.-....... ....+ .+..++..... ...+..|.|-| |.|++ ..+.+.++++.+++. +.
T Consensus 27 PFC~~~C~yC~f~~~~~~~~~~~~~~~Y~~~l~~ei~~~~~~~~~~~i~siy~GG-GTPs~L~~~~L~~ll~~i~~~-~~ 104 (394)
T PRK08898 27 PWCVRKCPYCDFNSHEWKDGGAIPEAAYLDALRADLEQALPLVWGRQVHTVFIGG-GTPSLLSAAGLDRLLSDVRAL-LP 104 (394)
T ss_pred CCccCcCCCCCCcccccCCCCccCHHHHHHHHHHHHHHHHHhccCCceeEEEECC-CCcCCCCHHHHHHHHHHHHHh-CC
Confidence 6699999999754322111 12223 34444433221 13578898889 99996 567888989888765 22
Q ss_pred C-CCCeEEEEeCC--ch-hhHHHHhhhCCCceEEEEecCCCHHHHhhhcCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEE
Q 017203 195 V-SPKRITVSTVG--IV-HAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYI 270 (375)
Q Consensus 195 i-~~~~itisTnG--~~-~~i~~l~~~~~~v~laiSL~a~~~~~r~~i~p~~~~~~~~~vl~~l~~~~~~~g~~v~i~~v 270 (375)
+ ....|++.+|- +. ..++.|.+.+ ...+.|.+.+.+++..+.+ ++..+.+++.++++. +++.+..|.+ -
T Consensus 105 ~~~~~eit~E~~p~~~~~e~L~~l~~~G-vnrisiGvQS~~~~~L~~l---~R~~~~~~~~~~i~~-~~~~~~~v~~--d 177 (394)
T PRK08898 105 LDPDAEITLEANPGTFEAEKFAQFRASG-VNRLSIGIQSFNDAHLKAL---GRIHDGAEARAAIEI-AAKHFDNFNL--D 177 (394)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHcC-CCeEEEecccCCHHHHHHh---CCCCCHHHHHHHHHH-HHHhCCceEE--E
Confidence 2 22578888874 22 2456666654 3468899999999998877 455678888888854 4444554544 4
Q ss_pred eeCCC-CCCHHHHHHHHHHHhcCCC-EEEEeecCCCCCCCCC-----CCCcHHHHHHH----HHHHHhcCCce
Q 017203 271 MLDGV-NDEEQHAHQLGKLLETFQV-VVNLIPFNPIGSVSQF-----RTSSDDKVSSF----QKILRGSYNIR 332 (375)
Q Consensus 271 li~gv-ND~~e~~~~L~~~l~~~~~-~vnLip~np~~~~~~~-----~~~s~e~i~~f----~~~l~~~~Gi~ 332 (375)
+|-|+ +++.+++.+.++.+..+++ +|.+-++.+. +++++ ..|+.+...++ .+.|. +.|..
T Consensus 178 lI~GlPgqt~~~~~~~l~~~~~l~p~~is~y~l~~~-~gT~l~~~~~~~~~~~~~~~~~~~~~~~L~-~~Gy~ 248 (394)
T PRK08898 178 LMYALPGQTLDEALADVETALAFGPPHLSLYHLTLE-PNTLFAKFPPALPDDDASADMQDWIEARLA-AAGYA 248 (394)
T ss_pred EEcCCCCCCHHHHHHHHHHHHhcCCCEEEEeeeEEC-CCChhhhccCCCCChHHHHHHHHHHHHHHH-HcCCc
Confidence 44454 7899999998999888875 5776666655 33322 23555554444 34555 46653
No 140
>PRK08629 coproporphyrinogen III oxidase; Provisional
Probab=98.57 E-value=1.4e-05 Score=81.20 Aligned_cols=199 Identities=11% Similarity=0.150 Sum_probs=120.7
Q ss_pred eEEEEeecCCCCCcCccccCCCCCcccCC---CHHHHHHHHHHhhhh-CCcceEEEEeCCCcccCHHHHHHHHHHhhCCC
Q 017203 117 STLCISSQVGCKMGCNFCATGTMGFKSNL---SSGEIVEQLVHASRL-SNIRNVVFMGMGEPLNNYAALVEAVRIMTGLP 192 (375)
Q Consensus 117 ~tl~vssq~GCnl~C~fC~~~~~~~~r~l---t~~ei~~qi~~~~~~-~~i~~Ivf~GmGEPlln~~~l~~~i~~l~~~g 192 (375)
..++|-. .=|+.+|.||.-......... -.+.+.+++...... ..+..|.|-| |-|++..+.+.++++.+++.
T Consensus 53 ~~LYvHI-PFC~~~C~yC~f~~~~~~~~~~~~Y~~~L~~Ei~~~~~~~~~~~siy~GG-GTPs~l~~~L~~ll~~i~~~- 129 (433)
T PRK08629 53 YMLYAHV-PFCHTLCPYCSFHRFYFKEDKARAYFISLRKEMEMVKELGYDFESMYVGG-GTTTILEDELAKTLELAKKL- 129 (433)
T ss_pred EEEEEEe-CCccCcCCCCCCcCcCCCcchHHHHHHHHHHHHHHHHhcCCceEEEEECC-CccccCHHHHHHHHHHHHHh-
Confidence 3444432 559999999986543222111 134555555543322 3567888888 99999888888888888765
Q ss_pred CCCCCCeEEEEeCC--chh-hHHHHhhhCCCceEEEEecCCCHHHHhhhcCCCCCCCHHHHHHHHHHHHHhcCCcEEEEE
Q 017203 193 FQVSPKRITVSTVG--IVH-AINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEY 269 (375)
Q Consensus 193 ~~i~~~~itisTnG--~~~-~i~~l~~~~~~v~laiSL~a~~~~~r~~i~p~~~~~~~~~vl~~l~~~~~~~g~~v~i~~ 269 (375)
+.+ ..+++.+|= +.+ .++.+.+ . ...+.|.+.+.+++..+.+-...+..+.+++++.++.. ......+ .+
T Consensus 130 f~i--~eis~E~~P~~lt~e~L~~l~~-~-vnrlsiGVQS~~d~vLk~~gR~h~~~~~~~~~~~l~~~-~~~~~~v--~~ 202 (433)
T PRK08629 130 FSI--KEVSCESDPNHLDPPKLKQLKG-L-IDRLSIGVQSFNDDILKMVDRYEKFGSGQETFEKIMKA-KGLFPII--NV 202 (433)
T ss_pred CCC--ceEEEEeCcccCCHHHHHHHHH-h-CCeEEEecCcCCHHHHHHcCCCCChhHHHHHHHHHHHH-hccCCeE--EE
Confidence 222 367777654 223 3444443 3 34688899999999887763322222345556666432 1222223 34
Q ss_pred EeeCC-CCCCHHHHHHHHHHHhcCCC-EEEEeecCCCCCCC------CCCCCcHHHHHHHHHHHH
Q 017203 270 IMLDG-VNDEEQHAHQLGKLLETFQV-VVNLIPFNPIGSVS------QFRTSSDDKVSSFQKILR 326 (375)
Q Consensus 270 vli~g-vND~~e~~~~L~~~l~~~~~-~vnLip~np~~~~~------~~~~~s~e~i~~f~~~l~ 326 (375)
-+|-| .+++.+++.+-++++..+++ +|.+-|+... +++ ....|+.+...++...+.
T Consensus 203 DlI~GlPgqT~e~~~~~l~~~~~l~p~~is~y~L~~~-~~t~~~~~~~~~~p~~d~~~~~~~~~~ 266 (433)
T PRK08629 203 DLIFNFPGQTDEVLQHDLDIAKRLDPRQITTYPLMKS-HQTRKSVKGSLGASQKDNERQYYQIIN 266 (433)
T ss_pred EEEccCCCCCHHHHHHHHHHHHhCCCCEEEEccceec-cCchhhhcCCCCCcCHHHHHHHHHHHH
Confidence 44433 56789999999999999875 5777777644 221 234566666666666543
No 141
>PRK09234 fbiC FO synthase; Reviewed
Probab=98.55 E-value=7.1e-06 Score=89.22 Aligned_cols=202 Identities=15% Similarity=0.176 Sum_probs=128.8
Q ss_pred CCceEEEEe----ecCCCCCcCccccCCCCC---cccCCCHHHHHHHHHHhhhhCCcceEEEEeCCC-cccCHHHHHHHH
Q 017203 114 GPRSTLCIS----SQVGCKMGCNFCATGTMG---FKSNLSSGEIVEQLVHASRLSNIRNVVFMGMGE-PLNNYAALVEAV 185 (375)
Q Consensus 114 ~~r~tl~vs----sq~GCnl~C~fC~~~~~~---~~r~lt~~ei~~qi~~~~~~~~i~~Ivf~GmGE-Plln~~~l~~~i 185 (375)
|...++++. .+..|+.+|.||+-.+.. ....++.+||++.+..+.. .+++.|.+.| |+ |-+..+.+.+++
T Consensus 519 G~~Vt~vvn~~In~TN~C~~~C~FCafs~~~~~~~~y~Ls~eeI~~~a~ea~~-~G~tev~i~g-G~~p~~~~~~y~~li 596 (843)
T PRK09234 519 GDDVTYVVNRNINFTNICYTGCRFCAFAQRKTDADAYTLSLDEVADRAWEAWV-AGATEVCMQG-GIHPELPGTGYADLV 596 (843)
T ss_pred CCeEEEEEeeceecCCCCCCCCcccccccCCCCCCcccCCHHHHHHHHHHHHH-CCCCEEEEec-CCCCCcCHHHHHHHH
Confidence 345555443 368999999999875431 2345899999999998776 5788999988 76 556677899999
Q ss_pred HHhhCCCCCCCCCeEEEEe----------CCch--hhHHHHhhhCCCceEEE-EecCCCHHHHhhhcCCCCCCCHHHHHH
Q 017203 186 RIMTGLPFQVSPKRITVST----------VGIV--HAINKFHSDLPGLNLAV-SLHAPVQDVRCQIMPAARAFPLEKLMN 252 (375)
Q Consensus 186 ~~l~~~g~~i~~~~itisT----------nG~~--~~i~~l~~~~~~v~lai-SL~a~~~~~r~~i~p~~~~~~~~~vl~ 252 (375)
+.+++... ..++...| .|+. ..+.+|.+.+. ..+-- +=.-.+++.|..+.|. +.+.++-++
T Consensus 597 r~IK~~~p---~i~i~afsp~Ei~~~a~~~Gl~~~e~l~~LkeAGL-ds~pgt~aeil~d~vr~~i~p~--k~~~~~wle 670 (843)
T PRK09234 597 RAVKARVP---SMHVHAFSPMEIVNGAARLGLSIREWLTALREAGL-DTIPGTAAEILDDEVRWVLTKG--KLPTAEWIE 670 (843)
T ss_pred HHHHHhCC---CeeEEecChHHHHHHHHHcCCCHHHHHHHHHHhCc-CccCCCchhhCCHHHHhhcCCC--CCCHHHHHH
Confidence 99987631 13443332 3543 24567777653 12211 1112356788888774 446667777
Q ss_pred HHHHHHHhcCCcEEEEEEeeCCCCCCHHHHHHHHHHHhcCCCE----EEEee--cCCCCCCC-----CCCCCcHHHHHHH
Q 017203 253 ALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVV----VNLIP--FNPIGSVS-----QFRTSSDDKVSSF 321 (375)
Q Consensus 253 ~l~~~~~~~g~~v~i~~vli~gvND~~e~~~~L~~~l~~~~~~----vnLip--~np~~~~~-----~~~~~s~e~i~~f 321 (375)
.+ +.+++.|.+++--+ |=|..++.+|..+.+.+++++... ..+|| |.|..... ..+.++..+..+.
T Consensus 671 ~i-~~Ah~lGi~~~stm--m~G~~Et~edrv~hl~~LreLq~~tgGf~~fIPl~F~~~~tpl~l~~~~~~~~t~~e~Lr~ 747 (843)
T PRK09234 671 VV-TTAHEVGLRSSSTM--MYGHVDTPRHWVAHLRVLRDIQDRTGGFTEFVPLPFVHQNAPLYLAGAARPGPTHRENRAV 747 (843)
T ss_pred HH-HHHHHcCCCcccce--EEcCCCCHHHHHHHHHHHHhcCcccCCeeeeeeccccCCCCCcccccCCCCCCCHHHHHHH
Confidence 77 45677888765433 336678999999999999988642 33444 33321111 1245666666666
Q ss_pred HHHHH
Q 017203 322 QKILR 326 (375)
Q Consensus 322 ~~~l~ 326 (375)
..+.+
T Consensus 748 iAvaR 752 (843)
T PRK09234 748 HALAR 752 (843)
T ss_pred HHHHH
Confidence 55554
No 142
>PRK06582 coproporphyrinogen III oxidase; Provisional
Probab=98.53 E-value=4e-05 Score=76.83 Aligned_cols=202 Identities=11% Similarity=0.148 Sum_probs=124.3
Q ss_pred eEEEEeecCCCCCcCccccCCCCCcccCCCHHHHH----HHHHHhhh---hCCcceEEEEeCCCc-ccCHHHHHHHHHHh
Q 017203 117 STLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIV----EQLVHASR---LSNIRNVVFMGMGEP-LNNYAALVEAVRIM 188 (375)
Q Consensus 117 ~tl~vssq~GCnl~C~fC~~~~~~~~r~lt~~ei~----~qi~~~~~---~~~i~~Ivf~GmGEP-lln~~~l~~~i~~l 188 (375)
.+|+|-. .=|.-+|.||.-....... ...+.-+ .++..... ...++.|.|.| |.| ++.++.+.++++.+
T Consensus 12 ~~lYiHi-PFC~~~C~yC~f~~~~~~~-~~~~~Y~~aL~~Ei~~~~~~~~~~~i~tiy~GG-GTPs~l~~~~l~~ll~~i 88 (390)
T PRK06582 12 LSIYIHW-PFCLSKCPYCDFNSHVAST-IDHNQWLKSYEKEIEYFKDIIQNKYIKSIFFGG-GTPSLMNPVIVEGIINKI 88 (390)
T ss_pred eEEEEEe-CCCcCcCCCCCCeeccCCC-CCHHHHHHHHHHHHHHHHHHccCCceeEEEECC-CccccCCHHHHHHHHHHH
Confidence 3444433 7799999999754322111 2223323 33332221 13578899999 999 45677787888888
Q ss_pred hCCCCCCC-CCeEEEEeCCch---hhHHHHhhhCCCceEEEEecCCCHHHHhhhcCCCCCCCHHHHHHHHHHHHHhcCCc
Q 017203 189 TGLPFQVS-PKRITVSTVGIV---HAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQK 264 (375)
Q Consensus 189 ~~~g~~i~-~~~itisTnG~~---~~i~~l~~~~~~v~laiSL~a~~~~~r~~i~p~~~~~~~~~vl~~l~~~~~~~g~~ 264 (375)
++. +.++ ...+++.+|.-. ..++.|.+.+ ...|.|.+.+.+++..+.+ ++..+.++++++++. +++.+..
T Consensus 89 ~~~-~~~~~~~eitiE~nP~~~~~e~l~~l~~~G-vnRiSiGvQS~~d~~L~~l---gR~h~~~~~~~ai~~-~~~~~~~ 162 (390)
T PRK06582 89 SNL-AIIDNQTEITLETNPTSFETEKFKAFKLAG-INRVSIGVQSLKEDDLKKL---GRTHDCMQAIKTIEA-ANTIFPR 162 (390)
T ss_pred HHh-CCCCCCCEEEEEeCCCcCCHHHHHHHHHCC-CCEEEEECCcCCHHHHHHc---CCCCCHHHHHHHHHH-HHHhCCc
Confidence 764 1222 247999999842 2455555554 3578899999999887776 566789999999954 4444444
Q ss_pred EEEEEEeeCC-CCCCHHHHHHHHHHHhcCCC-EEEEeecCCCCCC---------CCCCCCcHHHHHHHH----HHHHhcC
Q 017203 265 IFIEYIMLDG-VNDEEQHAHQLGKLLETFQV-VVNLIPFNPIGSV---------SQFRTSSDDKVSSFQ----KILRGSY 329 (375)
Q Consensus 265 v~i~~vli~g-vND~~e~~~~L~~~l~~~~~-~vnLip~np~~~~---------~~~~~~s~e~i~~f~----~~l~~~~ 329 (375)
|.+ -+|-| .+.+.++..+-++.+..+++ +|.+-++... ++ ..+..|+.++..++. +.|+ ..
T Consensus 163 v~~--DlI~GlPgqt~e~~~~~l~~~~~l~p~his~y~L~i~-~gT~l~~~~~~g~~~~p~~~~~~~~~~~~~~~L~-~~ 238 (390)
T PRK06582 163 VSF--DLIYARSGQTLKDWQEELKQAMQLATSHISLYQLTIE-KGTPFYKLFKEGNLILPHSDAAAEMYEWTNHYLE-SK 238 (390)
T ss_pred EEE--EeecCCCCCCHHHHHHHHHHHHhcCCCEEEEecCEEc-cCChHHHHHhcCCCCCCChHHHHHHHHHHHHHHH-Hc
Confidence 444 34444 35677888887777777764 4666555543 22 235566665554443 4555 45
Q ss_pred Cc
Q 017203 330 NI 331 (375)
Q Consensus 330 Gi 331 (375)
|+
T Consensus 239 Gy 240 (390)
T PRK06582 239 KY 240 (390)
T ss_pred CC
Confidence 65
No 143
>PTZ00413 lipoate synthase; Provisional
Probab=98.40 E-value=0.00017 Score=71.08 Aligned_cols=214 Identities=14% Similarity=0.188 Sum_probs=135.8
Q ss_pred ceEEEEeecCCCCCcCccccCCCCCcccCCCHHHHHHHHHHhhhhCCcceEEEEe-CCCcccC--HHHHHHHHHHhhCCC
Q 017203 116 RSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSNIRNVVFMG-MGEPLNN--YAALVEAVRIMTGLP 192 (375)
Q Consensus 116 r~tl~vssq~GCnl~C~fC~~~~~~~~r~lt~~ei~~qi~~~~~~~~i~~Ivf~G-mGEPlln--~~~l~~~i~~l~~~g 192 (375)
..|+.|- +..|.-+|.||+.........++++|+.+....+... ++..++++. .++.+-. .+.+.+.++.+++..
T Consensus 149 tATfmil-G~~CTr~C~FCaqstg~~p~~lD~eEp~~vA~av~~~-Gl~~~VVTSv~RDDL~D~ga~~~a~~I~~Ir~~~ 226 (398)
T PTZ00413 149 TATIMVM-GDHCTRGCRFCSVKTSRKPPPLDPNEPEKVAKAVAEM-GVDYIVMTMVDRDDLPDGGASHVARCVELIKESN 226 (398)
T ss_pred eeEeeec-CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHc-CCCEEEEEEEcCCCCChhhHHHHHHHHHHHHccC
Confidence 5666663 4689999999988653324668999999988877653 556666665 2233433 356888888888752
Q ss_pred CCCCCCeEEEEe---CCchhhHHHHhhhCCCceEEEEecCCCHHHHhhhcCCCCCCCHHHHHHHHHHHHHhc-CCcEEEE
Q 017203 193 FQVSPKRITVST---VGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNS-QQKIFIE 268 (375)
Q Consensus 193 ~~i~~~~itisT---nG~~~~i~~l~~~~~~v~laiSL~a~~~~~r~~i~p~~~~~~~~~vl~~l~~~~~~~-g~~v~i~ 268 (375)
. ...|.+++ -|....+++|.+.++ ..++--|.. .+..+..+.. ...++++.++.++.. ++. ...+..-
T Consensus 227 p---~~~IevligDf~g~~e~l~~L~eAG~-dvynHNLET-v~rLyp~VRt--~~atYe~sLe~Lr~A-Ke~f~~gi~tc 298 (398)
T PTZ00413 227 P---ELLLEALVGDFHGDLKSVEKLANSPL-SVYAHNIEC-VERITPYVRD--RRASYRQSLKVLEHV-KEFTNGAMLTK 298 (398)
T ss_pred C---CCeEEEcCCccccCHHHHHHHHhcCC-CEEeccccc-CHhHHHHHcc--CcCCHHHHHHHHHHH-HHHhcCCceEe
Confidence 1 14466554 233446778888764 334444555 3566666631 135789999999654 443 2234333
Q ss_pred EEeeCCCCCCHHHHHHHHHHHhcCCCEEEEe-ec-CCCCCCCC-CCCCcHHHHHHHHHHHHhcCCce-E----EeccCCC
Q 017203 269 YIMLDGVNDEEQHAHQLGKLLETFQVVVNLI-PF-NPIGSVSQ-FRTSSDDKVSSFQKILRGSYNIR-T----TVRKQMG 340 (375)
Q Consensus 269 ~vli~gvND~~e~~~~L~~~l~~~~~~vnLi-p~-np~~~~~~-~~~~s~e~i~~f~~~l~~~~Gi~-v----~vR~~~g 340 (375)
.-+|=|..++.+++.++++.++++++.+-.+ +| .|.....+ .+..++++.+.++++.. +.|+. | .||.|.-
T Consensus 299 SGiIVGLGET~eEvie~m~dLrelGVDivtIGQYL~Ps~~h~~V~~yv~P~~F~~~~~~a~-~~Gf~~v~sgPlVRSSY~ 377 (398)
T PTZ00413 299 SSIMLGLGETEEEVRQTLRDLRTAGVSAVTLGQYLQPTKTRLKVSRYAHPKEFEMWEEEAM-KMGFLYCASGPLVRSSYR 377 (398)
T ss_pred eeeEecCCCCHHHHHHHHHHHHHcCCcEEeeccccCCCcccCCceeccCHHHHHHHHHHHH-HcCCceEEecCccccchh
Confidence 3334478899999999999999999874433 43 45521111 12345688899999888 68875 3 3665543
No 144
>COG1856 Uncharacterized homolog of biotin synthetase [Function unknown]
Probab=98.32 E-value=4.7e-05 Score=69.18 Aligned_cols=186 Identities=12% Similarity=0.241 Sum_probs=116.5
Q ss_pred cCCCCCcCccccCCCCCcccCCCHHHHHHHHHHhhhhCCcceEEEEeCCC-cccC--HHHHHHHHHHhhCC-CCCCCCCe
Q 017203 124 QVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSNIRNVVFMGMGE-PLNN--YAALVEAVRIMTGL-PFQVSPKR 199 (375)
Q Consensus 124 q~GCnl~C~fC~~~~~~~~r~lt~~ei~~qi~~~~~~~~i~~Ivf~GmGE-Plln--~~~l~~~i~~l~~~-g~~i~~~~ 199 (375)
..-|.++|++|.+......-..|.++++.....+.+ .+..++.++| |- |=.. ...+.+.+++++++ |+ .
T Consensus 18 G~yC~lnC~HCg~~~L~~Mi~vt~~~l~k~~~el~k-kGy~g~llSG-Gm~srg~VPl~kf~d~lK~lke~~~l-----~ 90 (275)
T COG1856 18 GAYCSLNCPHCGRHYLEHMIKVTTKSLLKRCMELEK-KGYEGCLLSG-GMDSRGKVPLWKFKDELKALKERTGL-----L 90 (275)
T ss_pred ccceEecChHHHHHHHHHhcccchHHHHHHHHHHHh-cCceeEEEeC-CcCCCCCccHHHHHHHHHHHHHhhCe-----E
Confidence 377999999998854333334455777777766654 4678999999 63 2111 23577889999988 63 2
Q ss_pred EEEEeCCchh--hHHHHhhhCCCceE-EEEecCCCHHHHhhhcCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEEe--eCC
Q 017203 200 ITVSTVGIVH--AINKFHSDLPGLNL-AVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIM--LDG 274 (375)
Q Consensus 200 itisTnG~~~--~i~~l~~~~~~v~l-aiSL~a~~~~~r~~i~p~~~~~~~~~vl~~l~~~~~~~g~~v~i~~vl--i~g 274 (375)
++ .-.|++. .+++|++++ +++ .+++-+.++.. .++...+ .+.++-++.+ .++++.|.+|...+++ -.|
T Consensus 91 in-aHvGfvdE~~~eklk~~~--vdvvsLDfvgDn~vI-k~vy~l~--ksv~dyl~~l-~~L~e~~irvvpHitiGL~~g 163 (275)
T COG1856 91 IN-AHVGFVDESDLEKLKEEL--VDVVSLDFVGDNDVI-KRVYKLP--KSVEDYLRSL-LLLKENGIRVVPHITIGLDFG 163 (275)
T ss_pred EE-EEeeeccHHHHHHHHHhc--CcEEEEeecCChHHH-HHHHcCC--ccHHHHHHHH-HHHHHcCceeceeEEEEeccC
Confidence 33 2356664 357777764 454 35665655444 4454443 3678888888 6778899888766553 222
Q ss_pred CCCCHHHHHHHHHHHhcCCC----EEEEeecCCCCCCCCCCCCcHHHHHHHHHHHHh
Q 017203 275 VNDEEQHAHQLGKLLETFQV----VVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRG 327 (375)
Q Consensus 275 vND~~e~~~~L~~~l~~~~~----~vnLip~np~~~~~~~~~~s~e~i~~f~~~l~~ 327 (375)
..+.-.+-++++..... -+-|+|+..+ .+...++|+.+++-+..++.++
T Consensus 164 ---ki~~e~kaIdiL~~~~~DalVl~vliPtpGt-km~~~~pp~~eE~i~v~~~AR~ 216 (275)
T COG1856 164 ---KIHGEFKAIDILVNYEPDALVLVVLIPTPGT-KMGNSPPPPVEEAIKVVKYARK 216 (275)
T ss_pred ---cccchHHHHHHHhcCCCCeEEEEEEecCCch-hccCCCCcCHHHHHHHHHHHHH
Confidence 11222334555555543 2456777665 4556678888888888888873
No 145
>PRK09234 fbiC FO synthase; Reviewed
Probab=98.17 E-value=9.7e-05 Score=80.52 Aligned_cols=188 Identities=11% Similarity=0.155 Sum_probs=119.7
Q ss_pred ecCCCCCcCccccCCCC---CcccCCCHHHHHHHHHHhhhhCCcceEEEEeCCC-cccC----------------HHHHH
Q 017203 123 SQVGCKMGCNFCATGTM---GFKSNLSSGEIVEQLVHASRLSNIRNVVFMGMGE-PLNN----------------YAALV 182 (375)
Q Consensus 123 sq~GCnl~C~fC~~~~~---~~~r~lt~~ei~~qi~~~~~~~~i~~Ivf~GmGE-Plln----------------~~~l~ 182 (375)
.+..|..+|.||.-... .....++.+||++.+..... .+++.+.|+| |+ |-.. .+.+.
T Consensus 77 ~Tn~C~~~C~YCaF~~~~~~~~~~~ls~eEIl~~a~~~~~-~G~~e~l~t~-G~~P~~~~~~~~~~l~~~gy~~~~ey~~ 154 (843)
T PRK09234 77 LTRLCRDRCHYCTFATVPGKLEAAYLSPDEVLDIARAGAA-AGCKEALFTL-GDRPEDRWPEAREWLDERGYDSTLDYVR 154 (843)
T ss_pred CCCCCCCCCCcCCCccCCCCCccccCCHHHHHHHHHHHHH-CCCCEEEEec-CCCCccccccccccccccccccHHHHHH
Confidence 34889999999976532 12245899999999988765 4678899999 87 4432 37788
Q ss_pred HHHHHhhCC-CCCCCCCeEEEEeCCch--hhHHHHhhhCCCceEEEEecCCCHHHHhh------hcCCCCCCCHHHHHHH
Q 017203 183 EAVRIMTGL-PFQVSPKRITVSTVGIV--HAINKFHSDLPGLNLAVSLHAPVQDVRCQ------IMPAARAFPLEKLMNA 253 (375)
Q Consensus 183 ~~i~~l~~~-g~~i~~~~itisTnG~~--~~i~~l~~~~~~v~laiSL~a~~~~~r~~------i~p~~~~~~~~~vl~~ 253 (375)
++++.+++. |+ ...++- |.+ ..+.+|++... +..+++....+..+.+ +.| +...+.-++.
T Consensus 155 ~~~~~ik~~~gl-----~p~i~~-G~ls~~E~~~Lk~~g~--s~gl~lEt~~~~l~~~~g~~h~~~P---~K~~~~RL~t 223 (843)
T PRK09234 155 AMAIRVLEETGL-----LPHLNP-GVMSWSELARLKPVAP--SMGMMLETTSRRLFEEKGGPHYGSP---DKDPAVRLRV 223 (843)
T ss_pred HHHHHHHHhcCC-----Cceeee-CCCCHHHHHHHHHhcC--cCCCCHHHHHHHHHHhhcccccCCC---CCCHHHHHHH
Confidence 899999875 52 122222 433 35677776643 3445565555555422 222 1233445777
Q ss_pred HHHHHHhcCCcEEEEEEeeCCCCCCHHHHHHHHHHHhcCC-----C-EEEEeecCCCC--CCCCCCCCcHHHHHHHHHHH
Q 017203 254 LKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQ-----V-VVNLIPFNPIG--SVSQFRTSSDDKVSSFQKIL 325 (375)
Q Consensus 254 l~~~~~~~g~~v~i~~vli~gvND~~e~~~~L~~~l~~~~-----~-~vnLip~np~~--~~~~~~~~s~e~i~~f~~~l 325 (375)
+ +.+.+.|.+++. .++=|+.++.+|.-+.+..++.+. + .|-+.+|.|.. +....+.++.+++.+...+.
T Consensus 224 i-~~A~~lGi~~ts--G~L~GiGEt~edRve~L~~LR~Lq~~~g~~~evi~~~F~p~~gT~l~~~~~~s~~e~Lr~iAva 300 (843)
T PRK09234 224 L-EDAGRLSVPFTT--GILIGIGETLAERAESLFAIRKLHREYGHIQEVIVQNFRAKPDTAMAGVPDAGLEELLATIAVA 300 (843)
T ss_pred H-HHHHHcCCCccc--eEEEECCCCHHHHHHHHHHHHHhhHhhCCCcEEeecccccCCCCCCCCCCCCCHHHHHHHHHHH
Confidence 7 456777887544 344478889999888888888773 2 24455677762 22245567787777776666
Q ss_pred H
Q 017203 326 R 326 (375)
Q Consensus 326 ~ 326 (375)
+
T Consensus 301 R 301 (843)
T PRK09234 301 R 301 (843)
T ss_pred H
Confidence 5
No 146
>COG1244 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=98.05 E-value=0.00091 Score=64.11 Aligned_cols=203 Identities=16% Similarity=0.227 Sum_probs=123.6
Q ss_pred CCceEEEEeecCCCC----CcCccccCCCCCcccCCCHHHHHHHHHHhhhhCC---cc-eE-EEEeCCCcccCHH-----
Q 017203 114 GPRSTLCISSQVGCK----MGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN---IR-NV-VFMGMGEPLNNYA----- 179 (375)
Q Consensus 114 ~~r~tl~vssq~GCn----l~C~fC~~~~~~~~r~lt~~ei~~qi~~~~~~~~---i~-~I-vf~GmGEPlln~~----- 179 (375)
+.++++.+.| .||- .+|.+|.-....-....+.++++.|+..+..... -. .| +|+. | -+|++.
T Consensus 45 ~k~l~vILrT-~GC~w~~~~gC~MCgY~~d~~~~~vs~E~l~~qfd~~~~k~~~~~~~~~vkIFTS-G-SFLD~~EVP~e 121 (358)
T COG1244 45 GKSLTVILRT-RGCRWYREGGCYMCGYPADSAGEPVSEENLINQFDEAYSKYEGKFDEFVVKIFTS-G-SFLDPEEVPRE 121 (358)
T ss_pred CceEEEEEec-CCcceeccCCcceeccccccCCCCCCHHHHHHHHHHHHHHhcccCCCceEEEEcc-c-ccCChhhCCHH
Confidence 3456666655 6775 4589997765444678999999999998643211 12 24 3444 6 455543
Q ss_pred HHHHHHHHhhCCCCCCCCCeEEEEeCC-ch--hhHHHHhhh--CCCceEEEEecCCCHHHHhhhcCCCCCCCHHHHHHHH
Q 017203 180 ALVEAVRIMTGLPFQVSPKRITVSTVG-IV--HAINKFHSD--LPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNAL 254 (375)
Q Consensus 180 ~l~~~i~~l~~~g~~i~~~~itisTnG-~~--~~i~~l~~~--~~~v~laiSL~a~~~~~r~~i~p~~~~~~~~~vl~~l 254 (375)
....+++.+.+.+ + ...+.+.|-- +. ..++.+.+. +..+.++|.|.+++++.|+.- +|++.++++.++++
T Consensus 122 ~R~~Il~~is~~~-~--v~~vvvESRpE~I~eE~l~e~~~il~gk~~EvaIGLETanD~ire~s--INKGftF~df~~A~ 196 (358)
T COG1244 122 ARRYILERISEND-N--VKEVVVESRPEFIREERLEEITEILEGKIVEVAIGLETANDKIREDS--INKGFTFEDFVRAA 196 (358)
T ss_pred HHHHHHHHHhhcc-c--eeEEEeecCchhcCHHHHHHHHHhhCCceEEEEEecccCcHHHHHHh--hhcCCcHHHHHHHH
Confidence 3445566666552 0 1467777643 11 234555554 334679999999999998654 38999999999999
Q ss_pred HHHHHhcCCcEEEEEEeeCCC-CCCHHHHHHHHHHHhcCCCEEEEeecCCCC-----------CCCCCCCCcHHHHHHHH
Q 017203 255 KEYQKNSQQKIFIEYIMLDGV-NDEEQHAHQLGKLLETFQVVVNLIPFNPIG-----------SVSQFRTSSDDKVSSFQ 322 (375)
Q Consensus 255 ~~~~~~~g~~v~i~~vli~gv-ND~~e~~~~L~~~l~~~~~~vnLip~np~~-----------~~~~~~~~s~e~i~~f~ 322 (375)
+.++.+|..+.. |+|++-+ -...+.++....-+.......+.+.+||+. ....|+||=.-.+.+..
T Consensus 197 -~~ir~~g~~vkt-YlllKP~FlSE~eAI~D~i~Si~~~~~~~d~iSinptnVqKgTlvE~lw~~g~YRPPwLWSivEVL 274 (358)
T COG1244 197 -EIIRNYGAKVKT-YLLLKPPFLSEKEAIEDVISSIVAAKPGTDTISINPTNVQKGTLVEKLWRRGLYRPPWLWSIVEVL 274 (358)
T ss_pred -HHHHHcCCceeE-EEEecccccChHHHHHHHHHHHHHhccCCCeEEecccccchhhHHHHHHHcCCCCCchHHHHHHHH
Confidence 566788877765 5666543 322334444444444332233445556653 13468888665666655
Q ss_pred HHHH
Q 017203 323 KILR 326 (375)
Q Consensus 323 ~~l~ 326 (375)
+.+.
T Consensus 275 ~~~~ 278 (358)
T COG1244 275 REAK 278 (358)
T ss_pred HHHH
Confidence 5555
No 147
>TIGR01211 ELP3 histone acetyltransferase, ELP3 family. The Saccharomyces cerevisiae member YPL086C has been characterized in vitro as an N-terminal acetyltransferase for all four core histones. It is a component of the RNA polymerase II holoenzyme, designated Elp3p for Elongator Protein 3. Members of this family are found in eukaryotes and archaea. These proteins are part of the larger set of GNAT acetyltransferases.
Probab=98.04 E-value=0.0016 Score=67.64 Aligned_cols=194 Identities=11% Similarity=0.211 Sum_probs=118.7
Q ss_pred CCCCC-cCccccCCCC---------Cc---------ccCCCHHHHHHHHHHhhhhC-CcceE--EEEeCCCcccCHH-HH
Q 017203 125 VGCKM-GCNFCATGTM---------GF---------KSNLSSGEIVEQLVHASRLS-NIRNV--VFMGMGEPLNNYA-AL 181 (375)
Q Consensus 125 ~GCnl-~C~fC~~~~~---------~~---------~r~lt~~ei~~qi~~~~~~~-~i~~I--vf~GmGEPlln~~-~l 181 (375)
.-||. +|.||.++-. +. .+.-+..++.+.+.+....+ .++.| .||| |-|+.-+. ..
T Consensus 76 ~~cph~~c~~cp~~~~~~~~~~sy~~~ep~~~ra~~~~~dpy~q~~~rl~~l~~~g~~~~kvE~i~~G-GTft~l~~~y~ 154 (522)
T TIGR01211 76 HRCPHGKCLYCPGGPDSENSPQSYTGYEPAAMRGRQNDYDPYEQVTARLEQLEQIGHPVDKVELIIMG-GTFPARDLDYQ 154 (522)
T ss_pred ccCCCCceEeCCCCCCcCCCCcccCCCCcHhHHHHHcCCCcHHHHHHHHHHHHHhCCCCceEEEEEEC-CCcccCCHHHH
Confidence 56994 7999998532 11 12244566666666555432 34444 8999 99998632 33
Q ss_pred HHHHHHhhCC--CCC--------------------CCCCeEEEEeCC--chh-hHHHHhhhCCCceEEEEecCCCHHHHh
Q 017203 182 VEAVRIMTGL--PFQ--------------------VSPKRITVSTVG--IVH-AINKFHSDLPGLNLAVSLHAPVQDVRC 236 (375)
Q Consensus 182 ~~~i~~l~~~--g~~--------------------i~~~~itisTnG--~~~-~i~~l~~~~~~v~laiSL~a~~~~~r~ 236 (375)
..+++.+.+. ++. .....++|+|+- +.+ .+..|.+.+ ...+.+.+.+.+++..+
T Consensus 155 ~~fl~~~~~a~~~~~~~~~~~~~~~~~~~~ne~a~~~~vgitiEtRPD~i~~e~L~~L~~~G-~~rVslGVQS~~d~VL~ 233 (522)
T TIGR01211 155 EWFIKRCLNAMNGFDQELKGNSTLEEAIRINETSKHRCVGLTIETRPDYCREEHIDRMLKLG-ATRVELGVQTIYNDILE 233 (522)
T ss_pred HHHHHHHHHHhccccccccccchHHHHHHhhhcccCCeEEEEEEEcCCcCCHHHHHHHHHcC-CCEEEEECccCCHHHHH
Confidence 3344433321 100 011457777743 222 355555544 45788999999999888
Q ss_pred hhcCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEEeeCC-CCCCHHHHHHHHHHHhc---CCC-EEEEeecCCCC------
Q 017203 237 QIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDG-VNDEEQHAHQLGKLLET---FQV-VVNLIPFNPIG------ 305 (375)
Q Consensus 237 ~i~p~~~~~~~~~vl~~l~~~~~~~g~~v~i~~vli~g-vND~~e~~~~L~~~l~~---~~~-~vnLip~np~~------ 305 (375)
.+ ++..+.+++.+++ +.+++.|..+ .+-+|.| .+++.++..+.++.+.. +++ .|.+-|..+..
T Consensus 234 ~i---nRght~~~v~~Ai-~~lr~~G~~v--~~~LM~GLPgqt~e~~~~t~~~l~~~~~l~pD~Ikiypl~V~~gT~L~~ 307 (522)
T TIGR01211 234 RT---KRGHTVRDVVEAT-RLLRDAGLKV--VYHIMPGLPGSSFERDLEMFREIFEDPRFKPDMLKIYPTLVTRGTELYE 307 (522)
T ss_pred Hh---CCCCCHHHHHHHH-HHHHHcCCeE--EEEeecCCCCCCHHHHHHHHHHHHhccCCCcCEEEEecceeeCCCHHHH
Confidence 77 6788999999999 5677888754 4445566 46788877777776653 443 36665544431
Q ss_pred --CCCCCCCCcHHHHHHHHHHHH
Q 017203 306 --SVSQFRTSSDDKVSSFQKILR 326 (375)
Q Consensus 306 --~~~~~~~~s~e~i~~f~~~l~ 326 (375)
....|++++.+++.++...+.
T Consensus 308 ~~~~G~y~p~t~ee~v~l~~~~~ 330 (522)
T TIGR01211 308 LWKRGEYKPYTTEEAVELIVEIK 330 (522)
T ss_pred HHHcCCCCCCCHHHHHHHHHHHH
Confidence 123578888877766655543
No 148
>TIGR03279 cyano_FeS_chp putative FeS-containing Cyanobacterial-specific oxidoreductase. Members of this protein family are predicted FeS-containing oxidoreductases of unknown function, apparently restricted to and universal across the Cyanobacteria. The high trusted cutoff score for this model, 700 bits, excludes homologs from other lineages. This exclusion seems justified because a significant number of sequence positions are simultaneously unique to and invariant across the Cyanobacteria, suggesting a specialized, conserved function, perhaps related to photosynthesis. A distantly related protein family, TIGR03278, in universal in and restricted to archaeal methanogens, and may be linked to methanogenesis.
Probab=98.03 E-value=0.0001 Score=73.93 Aligned_cols=84 Identities=18% Similarity=0.232 Sum_probs=65.6
Q ss_pred EeCCchhhHHHHhhhCCCceEEEEecCCCHHHHhhhcCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEEeeCCCCCCHHHH
Q 017203 203 STVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHA 282 (375)
Q Consensus 203 sTnG~~~~i~~l~~~~~~v~laiSL~a~~~~~r~~i~p~~~~~~~~~vl~~l~~~~~~~g~~v~i~~vli~gvND~~e~~ 282 (375)
-||=.-..++++.+... .-+.||+|+.+++.|.++|... ...++++.++ ++.+.++.+..+.|++||+||. +++
T Consensus 123 LTNl~~~d~~RI~~~~l-spl~iSVhat~p~lR~~ll~n~---~a~~il~~l~-~l~~~~I~~h~qiVlcPGiNDg-~~L 196 (433)
T TIGR03279 123 LTNLPPAEWQRIEQLRL-SPLYVSVHATEPSLRARLLKNP---RAGLILEQLK-WFQERRLQLHAQVVVCPGINDG-KHL 196 (433)
T ss_pred ecCCCHHHHHHHHHcCC-CCEEEEEecCCHHHHHHHhCCC---CHHHHHHHHH-HHHHcCCeEEEEEEEcCCcCCH-HHH
Confidence 35654445667776542 3589999999999999998632 5689999995 4557789999999999999997 578
Q ss_pred HHHHHHHhcC
Q 017203 283 HQLGKLLETF 292 (375)
Q Consensus 283 ~~L~~~l~~~ 292 (375)
++.++.+..+
T Consensus 197 ~~Ti~dL~~~ 206 (433)
T TIGR03279 197 ERTLRDLAQF 206 (433)
T ss_pred HHHHHHHHhh
Confidence 8877777766
No 149
>COG1060 ThiH Thiamine biosynthesis enzyme ThiH and related uncharacterized enzymes [Coenzyme metabolism / General function prediction only]
Probab=97.91 E-value=0.00051 Score=68.23 Aligned_cols=200 Identities=17% Similarity=0.162 Sum_probs=114.6
Q ss_pred cCCCCCcCccccCCCCC---cccCCCHHHHHHHHHHhhhhCCcceEEEEeCCC-cccCHHHHHHHHHHhhCCCCCCCCCe
Q 017203 124 QVGCKMGCNFCATGTMG---FKSNLSSGEIVEQLVHASRLSNIRNVVFMGMGE-PLNNYAALVEAVRIMTGLPFQVSPKR 199 (375)
Q Consensus 124 q~GCnl~C~fC~~~~~~---~~r~lt~~ei~~qi~~~~~~~~i~~Ivf~GmGE-Plln~~~l~~~i~~l~~~g~~i~~~~ 199 (375)
+.-|..+|.||.=.... ....|+++||.+++...... +++.|.|.| || |-..++...+.++.+++.- +..+
T Consensus 66 TN~C~~~C~fCaF~~~~~~~~~y~Ls~eeI~~~~~~~~~~-G~~Evli~g-G~~p~~~~~y~~~~~~~ik~~~---p~~~ 140 (370)
T COG1060 66 TNICVNDCTFCAFYRKPGDPKAYTLSPEEILEEVREAVKR-GITEVLIVG-GEHPELSLEYYEELFRTIKEEF---PDLH 140 (370)
T ss_pred chhhcCCCCccccccCCCCccccccCHHHHHHHHHHHHHc-CCeEEEEec-CcCCCcchHHHHHHHHHHHHhC---cchh
Confidence 37799999999654322 23469999999999988764 789999999 87 6667788889999998741 1133
Q ss_pred EEEEeCC-ch-----------hhHHHHhhhCCCceEEEEe-cCCCHHHHhhhcCCCCCCCHHHHHHHHHHHHHhcCCcEE
Q 017203 200 ITVSTVG-IV-----------HAINKFHSDLPGLNLAVSL-HAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIF 266 (375)
Q Consensus 200 itisTnG-~~-----------~~i~~l~~~~~~v~laiSL-~a~~~~~r~~i~p~~~~~~~~~vl~~l~~~~~~~g~~v~ 266 (375)
+.--|++ +. ..+++|.+.+.. .+-..- .=..++.|+.+.| .+.+.+.-++.+ +.+.+.|++.+
T Consensus 141 i~a~s~~ei~~~~~~~~~s~~E~l~~Lk~aGld-smpg~~aeil~e~vr~~~~p--~K~~~~~wle~~-~~Ah~lGI~~t 216 (370)
T COG1060 141 IHALSAGEILFLAREGGLSYEEVLKRLKEAGLD-SMPGGGAEILSEEVRKIHCP--PKKSPEEWLEIH-ERAHRLGIPTT 216 (370)
T ss_pred hcccCHHHhHHHHhccCCCHHHHHHHHHHcCCC-cCcCcceeechHHHHHhhCC--CCCCHHHHHHHH-HHHHHcCCCcc
Confidence 4434444 11 124566655421 111100 1113455555553 456788889999 45677888766
Q ss_pred EEEEeeCCCCCCHHHHHHHHHHH----hcCCCEEEEe--ecCCCCC---CCCCCCCcHHHHHHHHHHHHhcCCceEE
Q 017203 267 IEYIMLDGVNDEEQHAHQLGKLL----ETFQVVVNLI--PFNPIGS---VSQFRTSSDDKVSSFQKILRGSYNIRTT 334 (375)
Q Consensus 267 i~~vli~gvND~~e~~~~L~~~l----~~~~~~vnLi--p~np~~~---~~~~~~~s~e~i~~f~~~l~~~~Gi~v~ 334 (375)
-..++ .++.+ .+|.-.-..-+ +..+....+| +|.|... ......++..++.+...+.+--.+..+.
T Consensus 217 atml~-Gh~E~-~ed~~~hl~~ir~lQ~~~gg~~~fI~~~f~p~~~~~~~~~~~~~~~~~~l~~iAiaRi~l~~~i~ 291 (370)
T COG1060 217 ATMLL-GHVET-REDRIDHLEHIRDLQDETGGFQEFIPLRFRPENGPLPAEVVPEASLEQDLKAIALARIFLDNNIS 291 (370)
T ss_pred ceeEE-EecCC-HHHHHHHHHHHHHHHHHhCCcEEEEcccccCCCCCccccCCCCCCHHHHHHHHHHHHHHccCccc
Confidence 54433 33333 44433333333 3334333444 4666521 1123445666666666555533443443
No 150
>COG0635 HemN Coproporphyrinogen III oxidase and related Fe-S oxidoreductases [Coenzyme metabolism]
Probab=97.70 E-value=0.0065 Score=61.50 Aligned_cols=168 Identities=15% Similarity=0.194 Sum_probs=107.8
Q ss_pred eEEEEeecCCCCCcCccccCCCCCcccCCCHHHHHHHH----HHhhhh----CCcceEEEEeCCCccc-CHHHHHHHHHH
Q 017203 117 STLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQL----VHASRL----SNIRNVVFMGMGEPLN-NYAALVEAVRI 187 (375)
Q Consensus 117 ~tl~vssq~GCnl~C~fC~~~~~~~~r~lt~~ei~~qi----~~~~~~----~~i~~Ivf~GmGEPll-n~~~l~~~i~~ 187 (375)
.+++|-. .=|.-.|.||.-........-..++.++.+ ...... ..+..|.|-| |.|++ +++.+..++..
T Consensus 35 ~slYiHi-PFC~~~C~YC~fn~~~~~~~~~~~~Y~~aL~~Ei~~~~~~~~~~~~v~ti~~GG-GTPslL~~~~l~~ll~~ 112 (416)
T COG0635 35 LSLYIHI-PFCVSKCPYCDFNSHVTKRGQPVDEYLDALLEEIELVAALLGGQREVKTIYFGG-GTPSLLSPEQLERLLKA 112 (416)
T ss_pred eEEEEEc-ccccccCCCCCCeeeccCCCChHHHHHHHHHHHHHHHHhhcCCCCeEEEEEECC-CccccCCHHHHHHHHHH
Confidence 4444433 679999999987654333333344344333 332221 1477888888 99987 46677788888
Q ss_pred hhCC-CCCCCC-CeEEEEeCCch---hhHHHHhhhCCCceEEEEecCCCHHHHhhhcCCCCCCCHHHHHHHHHHHHHhcC
Q 017203 188 MTGL-PFQVSP-KRITVSTVGIV---HAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQ 262 (375)
Q Consensus 188 l~~~-g~~i~~-~~itisTnG~~---~~i~~l~~~~~~v~laiSL~a~~~~~r~~i~p~~~~~~~~~vl~~l~~~~~~~g 262 (375)
+++. + .+.. .-|||..|=-. ..+..+.+.+. .++.+.+-+.+++..+.+ ++..+.+.+.+++. .+++.|
T Consensus 113 l~~~~~-~~~~~~EitiE~nP~~~~~e~~~~l~~~Gv-NRiSlGVQsf~~~~lk~l---gR~h~~~~~~~a~~-~~~~~g 186 (416)
T COG0635 113 LRELFN-DLDPDAEITIEANPGTVEAEKFKALKEAGV-NRISLGVQSFNDEVLKAL---GRIHDEEEAKEAVE-LARKAG 186 (416)
T ss_pred HHHhcc-cCCCCceEEEEeCCCCCCHHHHHHHHHcCC-CEEEeccccCCHHHHHHh---cCCCCHHHHHHHHH-HHHHcC
Confidence 8754 2 2222 66888887432 23455555542 367777899999998888 55678889999984 445554
Q ss_pred Cc-EEEEEEeeCC-CCCCHHHHHHHHHHHhcCCC
Q 017203 263 QK-IFIEYIMLDG-VNDEEQHAHQLGKLLETFQV 294 (375)
Q Consensus 263 ~~-v~i~~vli~g-vND~~e~~~~L~~~l~~~~~ 294 (375)
.. |.+ =||=| .+.+.+++.+-.+.+..+++
T Consensus 187 ~~~in~--DLIyglP~QT~~~~~~~l~~a~~l~p 218 (416)
T COG0635 187 FTSINI--DLIYGLPGQTLESLKEDLEQALELGP 218 (416)
T ss_pred CCcEEE--EeecCCCCCCHHHHHHHHHHHHhCCC
Confidence 32 333 33333 46788999999999888875
No 151
>COG2516 Biotin synthase-related enzyme [General function prediction only]
Probab=97.60 E-value=0.0028 Score=60.80 Aligned_cols=197 Identities=15% Similarity=0.260 Sum_probs=130.0
Q ss_pred CceEEEEeec--CCCCCcCccccCCCCC--------cc----cCCCHHHHHHHHHHhhhhCCcceEEEEeCCCcccCHHH
Q 017203 115 PRSTLCISSQ--VGCKMGCNFCATGTMG--------FK----SNLSSGEIVEQLVHASRLSNIRNVVFMGMGEPLNNYAA 180 (375)
Q Consensus 115 ~r~tl~vssq--~GCnl~C~fC~~~~~~--------~~----r~lt~~ei~~qi~~~~~~~~i~~Ivf~GmGEPlln~~~ 180 (375)
...|+++.++ .||-.+|.||...+.. +. .....+++++.+..... ..+.|.+.-.-+|-.+. .
T Consensus 27 ~~~ta~l~t~~~~~c~~~ca~c~~ar~s~a~p~~~~lsRv~w~~v~l~~~~~~~~~~~g--~~~rici~~i~~p~~~~-d 103 (339)
T COG2516 27 RPTTAYLMTTYPGGCIADCAYCPQARSSTANPPKKVLSRVEWPAVALEEVLKRLFYDLG--NFKRICIQQIAYPRALN-D 103 (339)
T ss_pred ccceeeeeeecCCceeechhhChhhhhcccCCCcceeeecccccchHHHHHhHhhhhhc--ccccccceeeccccccc-h
Confidence 3467777777 8999999999764311 11 12334555555554322 34667777777888774 5
Q ss_pred HHHHHHHhh-CCCCCCCCCeEEEE----eCCchhhHHHHhhhCCCceEEEEecCCCHHHHhhh-cCCCCCCCHHHHHHHH
Q 017203 181 LVEAVRIMT-GLPFQVSPKRITVS----TVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQI-MPAARAFPLEKLMNAL 254 (375)
Q Consensus 181 l~~~i~~l~-~~g~~i~~~~itis----TnG~~~~i~~l~~~~~~v~laiSL~a~~~~~r~~i-~p~~~~~~~~~vl~~l 254 (375)
+...++.++ ..+ ..++|+ -.++.+.+....+.+ ...+.|.+++++.+..+++ ++.+...+++.-++.+
T Consensus 104 ~~~i~~~~~~~~~-----~~itiseci~~~~~~~~l~e~~klg-~d~l~V~~daa~~~~~e~v~~~s~s~~S~e~~~~~l 177 (339)
T COG2516 104 LKLILERLHIRLG-----DPITISECITAVSLKEELEEYRKLG-ADYLGVAEDAANEELFEKVRKTSGSPHSWERYWEFL 177 (339)
T ss_pred hhhhhhhhhhccC-----CceehhhhhhcccchHHHHHHHhcc-hhhhhHHHHhcCHHHHHHHHhccCCCCcHHHHHHHH
Confidence 777777777 334 335555 333344455555543 2346688899999999998 6655557788888888
Q ss_pred HHHHHhcC-CcEEEEEEeeCCCCCCHHHHHHHHHHHhcCCCEEEEeecCCCC--CCCCCCCCcHHHHHHHH
Q 017203 255 KEYQKNSQ-QKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIG--SVSQFRTSSDDKVSSFQ 322 (375)
Q Consensus 255 ~~~~~~~g-~~v~i~~vli~gvND~~e~~~~L~~~l~~~~~~vnLip~np~~--~~~~~~~~s~e~i~~f~ 322 (375)
.+.+...| .++.+...+ |...++.++-+....+...+..+.|-.|.|.. .+.+..+++.+...+.+
T Consensus 178 ~~~~~~~~k~rv~ihliV--glGesD~~~ve~~~~v~~~g~~v~Lfaf~P~~gt~me~r~~~pve~Yrk~q 246 (339)
T COG2516 178 EKVAEAFGKGRVGIHLIV--GLGESDKDIVETIKRVRKRGGIVSLFAFTPLKGTQMENRKPPPVERYRKIQ 246 (339)
T ss_pred HHHHHHhccCCcceeEEe--ccCCchHHHHHHHHHHHhcCceEEEEEecccccccccCCCCCcHHHHHHHH
Confidence 77766666 556665444 35567789999999999999999999999973 12345677766665554
No 152
>COG0320 LipA Lipoate synthase [Coenzyme metabolism]
Probab=97.47 E-value=0.021 Score=53.83 Aligned_cols=202 Identities=15% Similarity=0.196 Sum_probs=119.9
Q ss_pred ceEEEEeecCCCCCcCccccCCCCCcccCCCHHHHHHHHHHhhhhCCcceEEEEeCCCccc-C--HHHHHHHHHHhhCCC
Q 017203 116 RSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSNIRNVVFMGMGEPLN-N--YAALVEAVRIMTGLP 192 (375)
Q Consensus 116 r~tl~vssq~GCnl~C~fC~~~~~~~~r~lt~~ei~~qi~~~~~~~~i~~Ivf~GmGEPll-n--~~~l~~~i~~l~~~g 192 (375)
..|+.|. +.-|.-+|.||.-.... ...++++|=..-...+.. .+++.||+++.--==| . ...+.+.++.+++..
T Consensus 70 tATFmIm-G~~CTR~C~FC~V~~g~-P~~lD~~EP~rvAeaV~~-mgLkyVViTsVdRDDL~DGGA~hfa~~i~~Ire~~ 146 (306)
T COG0320 70 TATFMIL-GDICTRRCRFCDVKTGR-PNPLDPDEPERVAEAVKD-MGLKYVVITSVDRDDLPDGGAQHFAECIRAIRELN 146 (306)
T ss_pred ceEEeec-cchhccCCCccccCCCC-CCCCCCchHHHHHHHHHH-hCCCeEEEEeeccccccccchHHHHHHHHHHHhhC
Confidence 3455542 35699999999886543 556666665544444443 3688999997311101 0 235666777777653
Q ss_pred CCCCCCeEEEEeC---CchhhHHHHhhhCCCceEEEEecCCCHHHHhhhcC-CCCCCCHHHHHHHHHHHHHhcCCcEEEE
Q 017203 193 FQVSPKRITVSTV---GIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMP-AARAFPLEKLMNALKEYQKNSQQKIFIE 268 (375)
Q Consensus 193 ~~i~~~~itisTn---G~~~~i~~l~~~~~~v~laiSL~a~~~~~r~~i~p-~~~~~~~~~vl~~l~~~~~~~g~~v~i~ 268 (375)
+...|-+-|. |....++.+++..|.+ + +.+-|+-.++.| +..+.+++.-++.++ ..++.+..+.-.
T Consensus 147 ---P~t~iEvL~PDF~G~~~al~~v~~~~pdV-~-----nHNvETVprL~~~VRp~A~Y~~SL~~L~-~~k~~~P~i~TK 216 (306)
T COG0320 147 ---PQTTIEVLTPDFRGNDDALEIVADAGPDV-F-----NHNVETVPRLYPRVRPGATYERSLSLLE-RAKELGPDIPTK 216 (306)
T ss_pred ---CCceEEEeCccccCCHHHHHHHHhcCcch-h-----hcccccchhcccccCCCCcHHHHHHHHH-HHHHhCCCcccc
Confidence 1245555553 3333456677766532 1 112232233333 234567888888884 556666555444
Q ss_pred EEeeCCCCCCHHHHHHHHHHHhcCCCEEEEe-ec-CCCCCCCC-CCCCcHHHHHHHHHHHHhcCCc
Q 017203 269 YIMLDGVNDEEQHAHQLGKLLETFQVVVNLI-PF-NPIGSVSQ-FRTSSDDKVSSFQKILRGSYNI 331 (375)
Q Consensus 269 ~vli~gvND~~e~~~~L~~~l~~~~~~vnLi-p~-np~~~~~~-~~~~s~e~i~~f~~~l~~~~Gi 331 (375)
.-++=|+..+.+++.+..+=++..++.+-.| +| .|...-.+ -+..++++.+.|+++.. +.|+
T Consensus 217 SgiMlGLGEt~~Ev~e~m~DLr~~gvdilTiGQYlqPS~~HlpV~ryv~PeeF~~~~~~a~-~~GF 281 (306)
T COG0320 217 SGLMVGLGETDEEVIEVMDDLRSAGVDILTIGQYLQPSRKHLPVQRYVTPEEFDELEEVAE-EMGF 281 (306)
T ss_pred cceeeecCCcHHHHHHHHHHHHHcCCCEEEeccccCCccccCCceeccCHHHHHHHHHHHH-Hccc
Confidence 4455588889999999888888899874433 44 34421111 13446788999999988 6886
No 153
>COG1031 Uncharacterized Fe-S oxidoreductase [Energy production and conversion]
Probab=97.10 E-value=0.031 Score=56.10 Aligned_cols=173 Identities=17% Similarity=0.217 Sum_probs=103.8
Q ss_pred CCCC-ceEEEEeecCCCCCc----CccccCCCCCcccCCCHHHHHHHHHHhhhh-------C-CcceEEEEeC---C-Cc
Q 017203 112 PGGP-RSTLCISSQVGCKMG----CNFCATGTMGFKSNLSSGEIVEQLVHASRL-------S-NIRNVVFMGM---G-EP 174 (375)
Q Consensus 112 ~~~~-r~tl~vssq~GCnl~----C~fC~~~~~~~~r~lt~~ei~~qi~~~~~~-------~-~i~~Ivf~Gm---G-EP 174 (375)
|... ....-+.++.||+-+ |.||-.+-.+.....+++.+++++...-.. . ..+-..++|- | =|
T Consensus 177 P~yp~~vi~EiETyRGC~r~~~ggCSFCtEp~~g~~~~R~~e~Vv~EVkaLY~~GvrhFRlGRQ~difsy~~~~~g~e~P 256 (560)
T COG1031 177 PNYPEYVICEIETYRGCPRRVSGGCSFCTEPVRGRPEFRPPEDVVEEVKALYRAGVRHFRLGRQADIFSYGADDNGGEVP 256 (560)
T ss_pred CCCcceEEEEEeeccCCcccccCCCccccCcCcCCcccCCHHHHHHHHHHHHHhccceeeeccccceeeecccccCCCCC
Confidence 4444 455668999999998 999998876777788999999998764321 1 1233445443 3 25
Q ss_pred ccCHHHHHHHHHHhhCCCCCCCCCeEEEEeCC---c---hh-hHHHHhh----hC-CCceEEEEecCCCHHHHhhhcCCC
Q 017203 175 LNNYAALVEAVRIMTGLPFQVSPKRITVSTVG---I---VH-AINKFHS----DL-PGLNLAVSLHAPVQDVRCQIMPAA 242 (375)
Q Consensus 175 lln~~~l~~~i~~l~~~g~~i~~~~itisTnG---~---~~-~i~~l~~----~~-~~v~laiSL~a~~~~~r~~i~p~~ 242 (375)
--|++.+.++.+-+++-.-++...|| + |. + .| .-.++++ -. |..-.++.+.++|+..-+.= |
T Consensus 257 ~PnPealekL~~Gir~~AP~l~tLHi--D-NaNP~tIa~yp~eSr~i~K~ivky~TpGnVaAfGlEsaDp~V~r~N---n 330 (560)
T COG1031 257 RPNPEALEKLFRGIRNVAPNLKTLHI--D-NANPATIARYPEESREIAKVIVKYGTPGNVAAFGLESADPRVARKN---N 330 (560)
T ss_pred CCCHHHHHHHHHHHHhhCCCCeeeee--c-CCCchhhhcChHHHHHHHHHHHhhCCCCceeeeeccccCHHHHhhc---c
Confidence 56788999999988865323322222 2 22 1 12 1123332 22 33346799999998765432 3
Q ss_pred CCCCHHHHHHHHHHHHHhcCC-cEE--EEEEeeCCCC-------CCHHHHHHHHHHHhcC
Q 017203 243 RAFPLEKLMNALKEYQKNSQQ-KIF--IEYIMLDGVN-------DEEQHAHQLGKLLETF 292 (375)
Q Consensus 243 ~~~~~~~vl~~l~~~~~~~g~-~v~--i~~vli~gvN-------D~~e~~~~L~~~l~~~ 292 (375)
-..+-|++++|++ .+.+.|. +-+ +- -++||+| .+.+..+.=.+|++.+
T Consensus 331 L~~spEEvl~AV~-ivn~vG~~rg~nGlP-~lLPGINfv~GL~GEtkeT~~ln~efL~~i 388 (560)
T COG1031 331 LNASPEEVLEAVE-IVNEVGGGRGYNGLP-YLLPGINFVFGLPGETKETYELNYEFLKEI 388 (560)
T ss_pred ccCCHHHHHHHHH-HHHHhcCccCcCCCc-cccccceeEecCCCccHHHHHhhHHHHHHH
Confidence 3567899999994 5555432 111 11 1345543 4566666666677654
No 154
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=97.01 E-value=0.084 Score=49.57 Aligned_cols=184 Identities=13% Similarity=0.100 Sum_probs=113.2
Q ss_pred cccCCCHHHHHHHHHHhhhhCCcceEEEEeCCCcc----cCHHHHHHHHHHhhCCCCCCCCCeE-EEEeCCchhhHHHHh
Q 017203 141 FKSNLSSGEIVEQLVHASRLSNIRNVVFMGMGEPL----NNYAALVEAVRIMTGLPFQVSPKRI-TVSTVGIVHAINKFH 215 (375)
Q Consensus 141 ~~r~lt~~ei~~qi~~~~~~~~i~~Ivf~GmGEPl----ln~~~l~~~i~~l~~~g~~i~~~~i-tisTnG~~~~i~~l~ 215 (375)
....++.++.++-+..... .+++.|-+.| |+|. +. +...++++.+++.+. ..++ .+.+|| ...++++.
T Consensus 12 ~~~~~s~e~~~~i~~~L~~-~GV~~IEvg~-~~~~~~~p~~-~~~~~~i~~l~~~~~---~~~~~~l~~~~-~~~i~~a~ 84 (265)
T cd03174 12 EGATFSTEDKLEIAEALDE-AGVDSIEVGS-GASPKAVPQM-EDDWEVLRAIRKLVP---NVKLQALVRNR-EKGIERAL 84 (265)
T ss_pred CCCCCCHHHHHHHHHHHHH-cCCCEEEecc-CcCccccccC-CCHHHHHHHHHhccC---CcEEEEEccCc-hhhHHHHH
Confidence 3456788888877776654 4789999999 8887 32 235667777776642 1344 677787 33455666
Q ss_pred hhCCCceEEEEecCCCHHHHhhh-cCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEEeeCCCCCCHHHHHHHHHHHhcCCC
Q 017203 216 SDLPGLNLAVSLHAPVQDVRCQI-MPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQV 294 (375)
Q Consensus 216 ~~~~~v~laiSL~a~~~~~r~~i-~p~~~~~~~~~vl~~l~~~~~~~g~~v~i~~vli~gvND~~e~~~~L~~~l~~~~~ 294 (375)
+.+ ...+.+++.+.+ .+.+. ........++.+.+++ +++++.|..+.+....+-+--.+++.+.++++.+...++
T Consensus 85 ~~g-~~~i~i~~~~s~--~~~~~~~~~~~~~~~~~~~~~i-~~a~~~G~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~g~ 160 (265)
T cd03174 85 EAG-VDEVRIFDSASE--THSRKNLNKSREEDLENAEEAI-EAAKEAGLEVEGSLEDAFGCKTDPEYVLEVAKALEEAGA 160 (265)
T ss_pred hCC-cCEEEEEEecCH--HHHHHHhCCCHHHHHHHHHHHH-HHHHHCCCeEEEEEEeecCCCCCHHHHHHHHHHHHHcCC
Confidence 554 345777776654 33332 1112223577888888 566788887777664333201467889999999999987
Q ss_pred E-EEEeecCCCCCCCCCCCCcHHHHHHHHHHHHhcCC---ceEEeccCCCcch
Q 017203 295 V-VNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYN---IRTTVRKQMGQDI 343 (375)
Q Consensus 295 ~-vnLip~np~~~~~~~~~~s~e~i~~f~~~l~~~~G---i~v~vR~~~g~di 343 (375)
. |.+ .++ .+ ..+++++.++.+.+++..+ +.+...+.+|.-+
T Consensus 161 ~~i~l---~Dt-~G----~~~P~~v~~li~~l~~~~~~~~~~~H~Hn~~gla~ 205 (265)
T cd03174 161 DEISL---KDT-VG----LATPEEVAELVKALREALPDVPLGLHTHNTLGLAV 205 (265)
T ss_pred CEEEe---chh-cC----CcCHHHHHHHHHHHHHhCCCCeEEEEeCCCCChHH
Confidence 4 444 333 12 2445677777777663333 3455556666544
No 155
>KOG1160 consensus Fe-S oxidoreductase [Energy production and conversion]
Probab=96.90 E-value=0.01 Score=59.12 Aligned_cols=149 Identities=15% Similarity=0.129 Sum_probs=88.5
Q ss_pred EEEeCCCcccCHHHHHHHHHHhhCCCCCCCCCeEEEEeCCchhhHHHHhhhCCCceEEEEecCCCHHHHhhhcCCCCCCC
Q 017203 167 VFMGMGEPLNNYAALVEAVRIMTGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFP 246 (375)
Q Consensus 167 vf~GmGEPlln~~~l~~~i~~l~~~g~~i~~~~itisTnG~~~~i~~l~~~~~~v~laiSL~a~~~~~r~~i~p~~~~~~ 246 (375)
.++=.|||-+. +.+-.+++.++++. ..--+-||...|. .+....+...+.+|+++.+...-..+-.+--++=
T Consensus 358 alslVgepi~y-p~in~f~k~lH~k~-----issflvtnaq~pe--~~rnvk~vtqlyvsvda~Tktslk~idrPlfkdF 429 (601)
T KOG1160|consen 358 ALSLVGEPIMY-PEINPFAKLLHQKL-----ISSFLVTNAQFPE--DIRNVKPVTQLYVSVDASTKTSLKKIDRPLFKDF 429 (601)
T ss_pred eeeeecccccc-hhhhHHHHHHHhcc-----chHHhcccccChH--HHhchhhhheeEEEEeecchhhhcCCCCchHHHH
Confidence 33334599996 57999999999875 2344678887663 3333333356889999888665544422212223
Q ss_pred HHHHHHHHHHHHHhcCCcEEEEEEeeCCCCCCHHHHHHHHHHHhc-CCCEEEEeecCCCC-----CCCCCCCCcHHHHHH
Q 017203 247 LEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLET-FQVVVNLIPFNPIG-----SVSQFRTSSDDKVSS 320 (375)
Q Consensus 247 ~~~vl~~l~~~~~~~g~~v~i~~vli~gvND~~e~~~~L~~~l~~-~~~~vnLip~np~~-----~~~~~~~~s~e~i~~ 320 (375)
++..++.+ +.+++...+..++.++++|.|. +++.+-.++++. +...+.+.-..-.+ +.+.-.-|-.|++-+
T Consensus 430 wEr~~d~l-~~lk~K~qrtvyRlTlVkg~n~--dd~~Ayfnlv~rglp~fieVkGvty~ges~~s~lTm~nvp~~Ee~v~ 506 (601)
T KOG1160|consen 430 WERFLDSL-KALKKKQQRTVYRLTLVKGWNS--DDLPAYFNLVSRGLPDFIEVKGVTYCGESELSNLTMTNVPWHEEVVE 506 (601)
T ss_pred HHHHHHHH-HHHHHhhcceEEEEEEeccccc--cccHHHHHHHhccCCceEEEeceeEecccccCcccccCccHHHHHHH
Confidence 45556666 3444555667899999999986 467887777763 33333332111111 111223455677777
Q ss_pred HHHHHH
Q 017203 321 FQKILR 326 (375)
Q Consensus 321 f~~~l~ 326 (375)
|...|.
T Consensus 507 Fv~eL~ 512 (601)
T KOG1160|consen 507 FVFELV 512 (601)
T ss_pred HHHHHH
Confidence 777663
No 156
>KOG2672 consensus Lipoate synthase [Coenzyme transport and metabolism]
Probab=96.65 E-value=0.062 Score=50.74 Aligned_cols=200 Identities=15% Similarity=0.193 Sum_probs=113.4
Q ss_pred eEEEEeecCCCCCcCccccCCCCCcccCCCHHHHHHHHHHhhhhCCcceEEEEeCC---CcccCHHHHHHHHHHhhCCCC
Q 017203 117 STLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSNIRNVVFMGMG---EPLNNYAALVEAVRIMTGLPF 193 (375)
Q Consensus 117 ~tl~vssq~GCnl~C~fC~~~~~~~~r~lt~~ei~~qi~~~~~~~~i~~Ivf~GmG---EPlln~~~l~~~i~~l~~~g~ 193 (375)
.|+.+. .--|.-+|+||.-........+++.|=..-...+.. -+++.||++... =|=.-.+.+.+.++.++...
T Consensus 112 ATIMlm-GDTCTRGCRFCsVKTsR~PpPlDp~EPeNTAeAIas-Wgl~YiVlTSVDRDDlpDgGa~HiAkTVq~iK~k~- 188 (360)
T KOG2672|consen 112 ATIMLM-GDTCTRGCRFCSVKTSRNPPPLDPNEPENTAEAIAS-WGLDYIVLTSVDRDDLPDGGANHIAKTVQKIKEKA- 188 (360)
T ss_pred EEEEee-cCccccCcceeeeecCCCCcCCCCCCcccHHHHHHH-cCCCeEEEEecccccCcCcchHHHHHHHHHHHhhC-
Confidence 344442 256999999998754333333333332222222222 367899998631 12122457889999998764
Q ss_pred CCCCCeEEEEe-----CCchhhHHHHhhhCCCceEEEEecCCCHHHHhhhcCC--CCCCCHHHHHHHHHHHHHhcCCcEE
Q 017203 194 QVSPKRITVST-----VGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPA--ARAFPLEKLMNALKEYQKNSQQKIF 266 (375)
Q Consensus 194 ~i~~~~itisT-----nG~~~~i~~l~~~~~~v~laiSL~a~~~~~r~~i~p~--~~~~~~~~vl~~l~~~~~~~g~~v~ 266 (375)
-+|-|.+ .|-...++.++..++ ++-|.+-++-+++.|. .+...+.+-++.+ +.++++...+.
T Consensus 189 ----p~ilvE~L~pDF~Gd~~~Ve~va~SGL------DV~AHNvETVe~Ltp~VRD~RA~yrQSL~VL-k~aK~~~P~li 257 (360)
T KOG2672|consen 189 ----PEILVECLTPDFRGDLKAVEKVAKSGL------DVYAHNVETVEELTPFVRDPRANYRQSLSVL-KHAKEVKPGLI 257 (360)
T ss_pred ----cccchhhcCccccCchHHHHHHHhcCc------cceecchhhHHhcchhhcCcccchHHhHHHH-HHHHhhCCCce
Confidence 2343332 222234566666653 2334444555555552 2345678888888 45666665554
Q ss_pred EEEEeeCCCCCCHHHHHHHHHHHhcCCCEE-EEeecCCCCC----CCCCCCCcHHHHHHHHHHHHhcCCceE
Q 017203 267 IEYIMLDGVNDEEQHAHQLGKLLETFQVVV-NLIPFNPIGS----VSQFRTSSDDKVSSFQKILRGSYNIRT 333 (375)
Q Consensus 267 i~~vli~gvND~~e~~~~L~~~l~~~~~~v-nLip~np~~~----~~~~~~~s~e~i~~f~~~l~~~~Gi~v 333 (375)
-...++-|...+++++.+..+.++..++.| .+-+|.+... -.+|-.| +..+....+-. +.|+..
T Consensus 258 tktsiMlglgetdeei~~tl~dLr~~~vdv~t~gqym~ptkrhl~v~eyvtp--ekf~~w~~~~~-~lgf~y 326 (360)
T KOG2672|consen 258 TKTSIMLGLGETDEEIKQTLKDLRAADVDVVTFGQYMQPTKRHLKVKEYVTP--EKFDYWKEYGE-ELGFLY 326 (360)
T ss_pred ehhhhhhccCCCHHHHHHHHHHHHHcCCcEEecccccCCccccceeEEeeCH--HHHHHHHHHhh-hcceEE
Confidence 445555577888899999999999888764 4556654311 1134444 44444444444 567654
No 157
>COG1243 ELP3 Histone acetyltransferase [Transcription / Chromatin structure and dynamics]
Probab=96.15 E-value=0.66 Score=46.99 Aligned_cols=117 Identities=13% Similarity=0.194 Sum_probs=70.4
Q ss_pred EEEEeCCc--hh-hHHHHhhhCCCceEEEEecCCCHHHHhhhcCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEEeeCCC-
Q 017203 200 ITVSTVGI--VH-AINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGV- 275 (375)
Q Consensus 200 itisTnG~--~~-~i~~l~~~~~~v~laiSL~a~~~~~r~~i~p~~~~~~~~~vl~~l~~~~~~~g~~v~i~~vli~gv- 275 (375)
+|++|-=- .+ .+.++.+.+ ...+-+.+.+..++..+.. +++++.+++.++. +.++.+|.+|.+. ++||.
T Consensus 187 itiETRPD~~~ee~ld~mlkyG-~TrVELGVQSiyd~Vl~~~---~RGHtvedv~~a~-rLlKd~GfKv~~H--iMpGLP 259 (515)
T COG1243 187 ITIETRPDYIDEEHLDQMLKYG-VTRVELGVQSIYDDVLERT---KRGHTVEDVVEAT-RLLKDAGFKVGYH--IMPGLP 259 (515)
T ss_pred EEEecCccccCHHHHHHHHhcC-CcEEEEeeeeHHHHHHHHh---cCCccHHHHHHHH-HHHHhcCcEEEEE--ecCCCC
Confidence 78887531 11 244555543 3456777888777776655 6788999999999 6888888766554 55653
Q ss_pred -CCCHHHHHHHHHHHhcCCCE---EEEee---cCCCC-----CCCCCCCCcHHHHHHHHH
Q 017203 276 -NDEEQHAHQLGKLLETFQVV---VNLIP---FNPIG-----SVSQFRTSSDDKVSSFQK 323 (375)
Q Consensus 276 -ND~~e~~~~L~~~l~~~~~~---vnLip---~np~~-----~~~~~~~~s~e~i~~f~~ 323 (375)
.|-+.|++...+.+..-.++ +.+-| +..+. ....|++-+.|+.-++-.
T Consensus 260 gs~~erDl~~f~~~f~~p~f~PDmlKIYPtLVi~gT~Ly~mwk~G~Ykpy~~EEaVeli~ 319 (515)
T COG1243 260 GSDFERDLESFREIFEDPRFRPDMLKIYPTLVIEGTELYEMWKRGLYKPYTTEEAVELIV 319 (515)
T ss_pred CCChHHHHHHHHHHHhCCCCCCCeEEEeeeEEECCchHHHHHHcCCCCCCCHHHHHHHHH
Confidence 23456677777777654322 22222 11111 234677777766555443
No 158
>COG4277 Predicted DNA-binding protein with the Helix-hairpin-helix motif [General function prediction only]
Probab=95.98 E-value=0.25 Score=47.27 Aligned_cols=219 Identities=13% Similarity=0.192 Sum_probs=113.2
Q ss_pred cCCCCCcCccccCCC-CCcc-cCCCHHHHHHHHHHhhhhCCcceEEEEeCCC---cccCHHHHHHHHHHhhCC-CCCCCC
Q 017203 124 QVGCKMGCNFCATGT-MGFK-SNLSSGEIVEQLVHASRLSNIRNVVFMGMGE---PLNNYAALVEAVRIMTGL-PFQVSP 197 (375)
Q Consensus 124 q~GCnl~C~fC~~~~-~~~~-r~lt~~ei~~qi~~~~~~~~i~~Ivf~GmGE---Plln~~~l~~~i~~l~~~-g~~i~~ 197 (375)
+.-|-.+|.||-|-. .... ..+|++||+.-.+..-+..-|+++.++. |= |=.-.+.+++.++.++=. +|+ +.
T Consensus 61 TN~CiyDC~YCINr~s~~~pra~ftp~Eiv~ltlnfYrRnYIeGLFLSS-Gvi~~~DyTmE~mi~var~LRle~~f~-GY 138 (404)
T COG4277 61 TNFCIYDCAYCINRSSNDTPRARFTPEEIVDLTLNFYRRNYIEGLFLSS-GVIKNPDYTMEEMIEVARILRLEHKFR-GY 138 (404)
T ss_pred hhhHHHhhHHHhccccCCCcccccCHHHHHHHHHHHHHHhhhhhheecc-ccccCcchHHHHHHHHHHHHhhccccC-cE
Confidence 477999999999842 2222 4689999999887754433467777766 52 222234667777777633 332 33
Q ss_pred CeEEEEeCCchhhHHHHhhhCCCceEEEEecCCCHHHHhhhcCCCCCCCHHHHHHHHHHHHHhcC---------CcE---
Q 017203 198 KRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQ---------QKI--- 265 (375)
Q Consensus 198 ~~itisTnG~~~~i~~l~~~~~~v~laiSL~a~~~~~r~~i~p~~~~~~~~~vl~~l~~~~~~~g---------~~v--- 265 (375)
+|..+..-.....|++.... ...+.|-+.-+.+.--..+.|.....++.+-|.-++....+.. ..+
T Consensus 139 IHlK~IPgas~~li~eagly--adRvSiNIElp~~~~lk~lap~K~p~dI~r~Mg~ir~~i~e~~e~~~r~r~tp~fapa 216 (404)
T COG4277 139 IHLKIIPGASPDLIKEAGLY--ADRVSINIELPTDDGLKLLAPEKDPTDILRSMGWIRLKILENAEDKRRKRHTPEFAPA 216 (404)
T ss_pred EEEEecCCCCHHHHHHHhhh--hheeEEeEecCCcchhhhhCCCCChHHHHHHHHHHHHHHhhcccchhhhccCccccCC
Confidence 56665543332223333221 1346666666666666667664333333333333322111111 000
Q ss_pred -EEEEEeeCCCCCCHHHHHHHHHHHhcC-CC-EEEEeecCCCCCCCCC---CCCcHHHHHHH---HHHHHhcCCceE-Ee
Q 017203 266 -FIEYIMLDGVNDEEQHAHQLGKLLETF-QV-VVNLIPFNPIGSVSQF---RTSSDDKVSSF---QKILRGSYNIRT-TV 335 (375)
Q Consensus 266 -~i~~vli~gvND~~e~~~~L~~~l~~~-~~-~vnLip~np~~~~~~~---~~~s~e~i~~f---~~~l~~~~Gi~v-~v 335 (375)
.-.-.++.-..++++++-...+.+-+. +. .|....|.|.. .++. ..|+.-...++ -..++ .||+.. .+
T Consensus 217 GQSTQmivGA~~~tD~~Ilsrs~~ly~~y~lkRVyySaf~Pv~-~s~~lp~~~pplmRehRLYQADwLlr-fYgF~~~Ei 294 (404)
T COG4277 217 GQSTQMIVGADGETDEDILSRSENLYGRYSLKRVYYSAFSPVP-SSPLLPDDKPPLMREHRLYQADWLLR-FYGFSADEI 294 (404)
T ss_pred CCceEEEEecCCCchHHHHHHHHHHhhccceeEEEeecccccC-CCCCCcccCCchhHHHHHHHHHHHHH-HhCCCHHHH
Confidence 011123444556777787777777654 32 47777888873 3322 22222222222 23455 788764 35
Q ss_pred ccCCCc----chhcccc
Q 017203 336 RKQMGQ----DISGACG 348 (375)
Q Consensus 336 R~~~g~----di~aaCG 348 (375)
+.+.|. |++.-|.
T Consensus 295 ~~~g~~~ld~~lDPK~~ 311 (404)
T COG4277 295 LASGGDFLDPDLDPKTA 311 (404)
T ss_pred HhcCCCccCCCCChhhH
Confidence 544444 4554443
No 159
>COG1242 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=95.45 E-value=0.9 Score=43.20 Aligned_cols=110 Identities=12% Similarity=0.160 Sum_probs=71.0
Q ss_pred ceEEEEecCCCHHHHhhhcCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEEeeCCCCCCHHHHHHHHHHHhcCCCE-EEEe
Q 017203 221 LNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVV-VNLI 299 (375)
Q Consensus 221 v~laiSL~a~~~~~r~~i~p~~~~~~~~~vl~~l~~~~~~~g~~v~i~~vli~gvND~~e~~~~L~~~l~~~~~~-vnLi 299 (375)
+.|-+.|.++++++-+.| |++.++....+++++ +++.|++|-...+ +.-.-++.+++-+.++.+..+++. |.|-
T Consensus 144 vWvELGLQT~h~~Tlk~i---NRgHd~~~y~dav~r-~rkrgIkvc~HiI-~GLPgE~~~~mleTak~v~~~~v~GIKlH 218 (312)
T COG1242 144 VWVELGLQTAHDKTLKRI---NRGHDFACYVDAVKR-LRKRGIKVCTHLI-NGLPGETRDEMLETAKIVAELGVDGIKLH 218 (312)
T ss_pred EEEEeccchhhHHHHHHH---hcccchHHHHHHHHH-HHHcCCeEEEEEe-eCCCCCCHHHHHHHHHHHHhcCCceEEEE
Confidence 344566788888887777 888999999999954 5677888765543 233346888999999999988764 5554
Q ss_pred ecCCCC--------CCCCCCCCcHHHH-HHHHHHHHhcCCceEEec
Q 017203 300 PFNPIG--------SVSQFRTSSDDKV-SSFQKILRGSYNIRTTVR 336 (375)
Q Consensus 300 p~np~~--------~~~~~~~~s~e~i-~~f~~~l~~~~Gi~v~vR 336 (375)
|.+-.. ....++..+.++. +...+.|+ ..--.+.+.
T Consensus 219 ~LhvvkgT~m~k~Y~~G~l~~ls~eeYv~~~~d~le-~lpp~vviH 263 (312)
T COG1242 219 PLHVVKGTPMEKMYEKGRLKFLSLEEYVELVCDQLE-HLPPEVVIH 263 (312)
T ss_pred EEEEecCChHHHHHHcCCceeccHHHHHHHHHHHHH-hCCcceEEE
Confidence 444331 1234566666554 33445565 333334443
No 160
>KOG2492 consensus CDK5 activator-binding protein [Signal transduction mechanisms]
Probab=94.32 E-value=0.51 Score=46.97 Aligned_cols=56 Identities=23% Similarity=0.468 Sum_probs=45.0
Q ss_pred CceEEEEeecCCCCCcCccccCC-CCCcccCCCHHHHHHHHHHhhhhCCcceEEEEeC
Q 017203 115 PRSTLCISSQVGCKMGCNFCATG-TMGFKSNLSSGEIVEQLVHASRLSNIRNVVFMGM 171 (375)
Q Consensus 115 ~r~tl~vssq~GCnl~C~fC~~~-~~~~~r~lt~~ei~~qi~~~~~~~~i~~Ivf~Gm 171 (375)
...|.|||...||+.-|.||--+ ..|..|..+.+-|++++....+ .+++.|++.|.
T Consensus 218 ~s~tAFvSiMRGCdNMCtyCiVpftrGreRsrpi~siv~ev~~L~~-qG~KeVTLLGQ 274 (552)
T KOG2492|consen 218 SSTTAFVSIMRGCDNMCTYCIVPFTRGRERSRPIESIVEEVKRLAE-QGVKEVTLLGQ 274 (552)
T ss_pred ccchhHHHHHhccccccceEEEeccCCcccCCchHHHHHHHHHHhh-cCceeeeeecc
Confidence 46899999999999999999875 3456677788889999887654 46788888883
No 161
>KOG4355 consensus Predicted Fe-S oxidoreductase [General function prediction only]
Probab=92.38 E-value=4 Score=40.61 Aligned_cols=178 Identities=16% Similarity=0.256 Sum_probs=97.8
Q ss_pred eEEEEeecCCCCCcCccccCCC-CCcccCCCHHHHHHHHHHhhhhCCcceEEEEeCCCcccCHH-----HHHHH----HH
Q 017203 117 STLCISSQVGCKMGCNFCATGT-MGFKSNLSSGEIVEQLVHASRLSNIRNVVFMGMGEPLNNYA-----ALVEA----VR 186 (375)
Q Consensus 117 ~tl~vssq~GCnl~C~fC~~~~-~~~~r~lt~~ei~~qi~~~~~~~~i~~Ivf~GmGEPlln~~-----~l~~~----i~ 186 (375)
..=.+|...||--.|.||.+.. .+.-...+.+++++.+...-. .++..|.++. |=+-.|. ++..+ ++
T Consensus 187 lieIi~intgclgaCtyckTkharg~l~sy~~dslvervrt~f~-egv~eIwlts--edTgaygrdig~slp~ll~klv~ 263 (547)
T KOG4355|consen 187 LIEIISINTGCLGACTYCKTKHARGLLASYPKDSLVERVRTSFE-EGVCEIWLTS--EDTGAYGRDIGKSLPKLLWKLVE 263 (547)
T ss_pred ceEEEEeccccccccccccccccccccccCCHHHHHHHHHHHHh-cCcEEEEecc--cccchhhhhhhhhhHHHHHHHHH
Confidence 4445566699999999999843 234456788999998877543 3566777765 3332221 22233 33
Q ss_pred HhhCC-CCCCCCCeEEEEeCCc--hhhHHHHhhh--CCCce--EEEEecCCCHHHHhhhcCCCCCCCHHHHHHHHHHHHH
Q 017203 187 IMTGL-PFQVSPKRITVSTVGI--VHAINKFHSD--LPGLN--LAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQK 259 (375)
Q Consensus 187 ~l~~~-g~~i~~~~itisTnG~--~~~i~~l~~~--~~~v~--laiSL~a~~~~~r~~i~p~~~~~~~~~vl~~l~~~~~ 259 (375)
.+-+. ++ ++. -||-- +.-+++.+.. +|.+. +.+-+.+.++..-.+.-.--....++.+.+.+.+.
T Consensus 264 ~iPe~cml-----r~g-mTnpP~ilehl~e~a~vlrhp~vYsflhvpvqsgsdsvl~emkreyc~~dfk~Vvd~Lter-- 335 (547)
T KOG4355|consen 264 VIPESCML-----RAG-MTNPPYILEHLEEAAFVLRHPRVYSFLHVPVQSGSDSVLTEMKREYCNFDFKIVVDFLTER-- 335 (547)
T ss_pred hcchhhhh-----hhc-CCCCchHHHHHHHHHHHhcCCeEEEEEecccccCchhHHHHHHHHHhhhhHHHHHHHHHhh--
Confidence 33322 21 111 23321 1122333332 33332 33445555554322221000123566666665433
Q ss_pred hcCCcEEEEEEeeCCC-CCCHHHHHHHHHHHhcCCCE-EEEeecCCCCCCC
Q 017203 260 NSQQKIFIEYIMLDGV-NDEEQHAHQLGKLLETFQVV-VNLIPFNPIGSVS 308 (375)
Q Consensus 260 ~~g~~v~i~~vli~gv-ND~~e~~~~L~~~l~~~~~~-vnLip~np~~~~~ 308 (375)
-..++|.+-+|-|+ ..+++|.++..+++++..+. +.+.+|.|- +++
T Consensus 336 --VPgi~IATDiIcgFPtETdeDFeeTmeLv~kYKFPslfInQfyPR-pGT 383 (547)
T KOG4355|consen 336 --VPGITIATDIICGFPTETDEDFEETMELVRKYKFPSLFINQFYPR-PGT 383 (547)
T ss_pred --CCCcEEeeeeeecCCCCchHHHHHHHHHHHHccCchhhhhhcCCC-CCC
Confidence 24467777666553 56889999999999998864 666678876 444
No 162
>KOG2900 consensus Biotin synthase [Coenzyme transport and metabolism]
Probab=90.48 E-value=1.3 Score=41.41 Aligned_cols=152 Identities=16% Similarity=0.348 Sum_probs=83.0
Q ss_pred cCCCCCcCccccCCC---CCc--ccCCCHHHHHHHHHHhhhhCCcceEEEEe------CCCcccCHHHHHHHHHHhhCCC
Q 017203 124 QVGCKMGCNFCATGT---MGF--KSNLSSGEIVEQLVHASRLSNIRNVVFMG------MGEPLNNYAALVEAVRIMTGLP 192 (375)
Q Consensus 124 q~GCnl~C~fC~~~~---~~~--~r~lt~~ei~~qi~~~~~~~~i~~Ivf~G------mGEPlln~~~l~~~i~~l~~~g 192 (375)
+.||.-+|.||+... .|. .+.+..+|+++....+++.+ -.. .-|| .|--. ++.++.+.++.+++.|
T Consensus 91 tGGCsEDCkYCaQSSRy~TGvKA~klmk~DeVi~~Ak~AK~~G-STR-FCmGaAWRD~~GRk~-~fk~IlE~ikevr~Mg 167 (380)
T KOG2900|consen 91 TGGCSEDCKYCAQSSRYDTGVKAEKLMKVDEVIKEAKEAKRNG-STR-FCMGAAWRDMKGRKS-AFKRILEMIKEVRDMG 167 (380)
T ss_pred cCCcccccchhhhhcccccchhHHHHhhHHHHHHHHHHHHhcC-Cce-eecchhhhhhccchh-HHHHHHHHHHHHHcCC
Confidence 379999999998743 222 24577888888888776532 122 2222 02222 3567888999998877
Q ss_pred CCCCCCeEEEEeCCchh--hHHHHhhhCCCceEEEEecCCCHHHHhhhcCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEE
Q 017203 193 FQVSPKRITVSTVGIVH--AINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYI 270 (375)
Q Consensus 193 ~~i~~~~itisTnG~~~--~i~~l~~~~~~v~laiSL~a~~~~~r~~i~p~~~~~~~~~vl~~l~~~~~~~g~~v~i~~v 270 (375)
+ .+ ..|-|.+. ..++|.+.++ ..-.--|+.. .+.|.+++- ..++++-++.++ -+++.|+++---=+
T Consensus 168 m-----Ev-CvTLGMv~~qQAkeLKdAGL-TAYNHNlDTS-REyYskvIt---TRtYDdRL~Ti~-nvr~aGikvCsGGI 235 (380)
T KOG2900|consen 168 M-----EV-CVTLGMVDQQQAKELKDAGL-TAYNHNLDTS-REYYSKVIT---TRTYDDRLQTIK-NVREAGIKVCSGGI 235 (380)
T ss_pred c-----ee-eeeeccccHHHHHHHHhccc-eecccCccch-hhhhcccce---ecchHHHHHHHH-HHHHhcceeccccc
Confidence 3 23 35678764 3456665542 1111123322 244444432 236778888884 45677766532222
Q ss_pred eeCCCCCCHHHHHHHHHHHhcC
Q 017203 271 MLDGVNDEEQHAHQLGKLLETF 292 (375)
Q Consensus 271 li~gvND~~e~~~~L~~~l~~~ 292 (375)
+ |+.+.++|--.|+.-+...
T Consensus 236 l--GLGE~e~DriGlihtLatm 255 (380)
T KOG2900|consen 236 L--GLGESEDDRIGLIHTLATM 255 (380)
T ss_pred c--cccccccceeeeeeeeccC
Confidence 2 3444544444444444433
No 163
>TIGR03279 cyano_FeS_chp putative FeS-containing Cyanobacterial-specific oxidoreductase. Members of this protein family are predicted FeS-containing oxidoreductases of unknown function, apparently restricted to and universal across the Cyanobacteria. The high trusted cutoff score for this model, 700 bits, excludes homologs from other lineages. This exclusion seems justified because a significant number of sequence positions are simultaneously unique to and invariant across the Cyanobacteria, suggesting a specialized, conserved function, perhaps related to photosynthesis. A distantly related protein family, TIGR03278, in universal in and restricted to archaeal methanogens, and may be linked to methanogenesis.
Probab=77.37 E-value=32 Score=35.06 Aligned_cols=61 Identities=16% Similarity=0.282 Sum_probs=38.5
Q ss_pred CCCCCcCccccCCCCCc------------------------ccCCCHHHHHHHHHHhhhhCCcc--eEEEEe--------
Q 017203 125 VGCKMGCNFCATGTMGF------------------------KSNLSSGEIVEQLVHASRLSNIR--NVVFMG-------- 170 (375)
Q Consensus 125 ~GCnl~C~fC~~~~~~~------------------------~r~lt~~ei~~qi~~~~~~~~i~--~Ivf~G-------- 170 (375)
.-|+.+|.||+--++.. -.||+.+++-.-+.. +++ +|.+..
T Consensus 82 ~~C~N~C~FCFidQlP~gmR~sLY~KDDDyRLSFL~GnyiTLTNl~~~d~~RI~~~-----~lspl~iSVhat~p~lR~~ 156 (433)
T TIGR03279 82 IQCNNRCPFCFIDQQPPGKRESLYLKDDDYRLSFLYGSYLTLTNLPPAEWQRIEQL-----RLSPLYVSVHATEPSLRAR 156 (433)
T ss_pred cccCCcCceEeccCCCCCCcCcceeccCcchhhhhccceeeecCCCHHHHHHHHHc-----CCCCEEEEEecCCHHHHHH
Confidence 67999999998754421 156777665444432 233 444444
Q ss_pred -CCCcccCHHHHHHHHHHhhCCC
Q 017203 171 -MGEPLNNYAALVEAVRIMTGLP 192 (375)
Q Consensus 171 -mGEPlln~~~l~~~i~~l~~~g 192 (375)
||.| +...+++.++.+.+.|
T Consensus 157 ll~n~--~a~~il~~l~~l~~~~ 177 (433)
T TIGR03279 157 LLKNP--RAGLILEQLKWFQERR 177 (433)
T ss_pred HhCCC--CHHHHHHHHHHHHHcC
Confidence 3556 3567888888888766
No 164
>PF14824 Sirohm_synth_M: Sirohaem biosynthesis protein central; PDB: 1KYQ_B.
Probab=73.99 E-value=3.8 Score=25.49 Aligned_cols=19 Identities=26% Similarity=0.422 Sum_probs=13.3
Q ss_pred CCeEEEEeCCchhhHHHHh
Q 017203 197 PKRITVSTVGIVHAINKFH 215 (375)
Q Consensus 197 ~~~itisTnG~~~~i~~l~ 215 (375)
+..|.|||||..|.+.++.
T Consensus 4 ~LqI~ISTnG~sP~la~~i 22 (30)
T PF14824_consen 4 PLQIAISTNGKSPRLARLI 22 (30)
T ss_dssp TEEEEEEESSS-HHHHHHH
T ss_pred CeEEEEECCCCChHHHHHH
Confidence 3579999999988664443
No 165
>PF08902 DUF1848: Domain of unknown function (DUF1848); InterPro: IPR014998 This group of proteins are functionally uncharacterised. The C terminus contains a cluster of cysteines that are similar to the iron-sulphur cluster found at the N terminus of IPR007197 from INTERPRO.
Probab=69.52 E-value=95 Score=29.59 Aligned_cols=87 Identities=16% Similarity=0.394 Sum_probs=51.8
Q ss_pred CHHHHHHHHHHHHHhcC-CcEEEEE--EeeCCCCCCHHHHHHHHHHHhcCC-----CEEEEe-ecCCCC---C--CCCCC
Q 017203 246 PLEKLMNALKEYQKNSQ-QKIFIEY--IMLDGVNDEEQHAHQLGKLLETFQ-----VVVNLI-PFNPIG---S--VSQFR 311 (375)
Q Consensus 246 ~~~~vl~~l~~~~~~~g-~~v~i~~--vli~gvND~~e~~~~L~~~l~~~~-----~~vnLi-p~np~~---~--~~~~~ 311 (375)
+.++++++++++.+..| .+|..+| +++-+.-+-..|++.+..+++.+. +.+.++ +|.-.. . +..+.
T Consensus 94 ~~~~~i~~f~~Ls~~iG~~rViWRYDPIil~~~~~~~~h~~~F~~la~~L~g~t~~~viSF~D~Y~k~~~~l~~~~~~~~ 173 (266)
T PF08902_consen 94 PKDERIETFRELSERIGPERVIWRYDPIILTDKYTVDYHLEAFERLAEALAGYTDRCVISFLDLYRKVRRNLARLGFRIR 173 (266)
T ss_pred CHHHHHHHHHHHHHHHCCCcEEEecCCEeECCCCCHHHHHHHHHHHHHHHhccCCEEEEEeeeccHHHHHHHHhhcCCCC
Confidence 46778888877777766 4588888 555554444556666555555442 234444 232221 0 11356
Q ss_pred CCcHHHHHHHHHHH----HhcCCceE
Q 017203 312 TSSDDKVSSFQKIL----RGSYNIRT 333 (375)
Q Consensus 312 ~~s~e~i~~f~~~l----~~~~Gi~v 333 (375)
.++.+++.++.+.+ + ++|+.+
T Consensus 174 ~~~~~~~~~l~~~l~~ia~-~~g~~l 198 (266)
T PF08902_consen 174 EPSEEEKRELAKRLAEIAK-KYGMTL 198 (266)
T ss_pred CCCHHHHHHHHHHHHHHHH-HcCCEE
Confidence 88888887776655 5 688865
No 166
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=67.51 E-value=1.2e+02 Score=29.21 Aligned_cols=128 Identities=13% Similarity=0.146 Sum_probs=71.3
Q ss_pred CCCHHHHHHHHHHhhhhCCcceEEEEeC-CC-cccCHHHHHHHHHHhhCC-CCCCCCCeEEE--EeCCchhh--HHHHhh
Q 017203 144 NLSSGEIVEQLVHASRLSNIRNVVFMGM-GE-PLNNYAALVEAVRIMTGL-PFQVSPKRITV--STVGIVHA--INKFHS 216 (375)
Q Consensus 144 ~lt~~ei~~qi~~~~~~~~i~~Ivf~Gm-GE-Plln~~~l~~~i~~l~~~-g~~i~~~~iti--sTnG~~~~--i~~l~~ 216 (375)
.++.+.+.+.+..... .++++|++.|. || |+|..++-.++++...+. +-. ..+.. .+|.+... +.+.++
T Consensus 21 ~vD~~a~~~lv~~li~-~Gv~gi~~~GttGE~~~Ls~eEr~~v~~~~v~~~~gr---vpviaG~g~~~t~eai~lak~a~ 96 (299)
T COG0329 21 SVDEEALRRLVEFLIA-AGVDGLVVLGTTGESPTLTLEERKEVLEAVVEAVGGR---VPVIAGVGSNSTAEAIELAKHAE 96 (299)
T ss_pred CcCHHHHHHHHHHHHH-cCCCEEEECCCCccchhcCHHHHHHHHHHHHHHHCCC---CcEEEecCCCcHHHHHHHHHHHH
Confidence 3666655555555444 46899998885 67 677777777777777655 311 12333 33444332 345555
Q ss_pred hCCCceEEEEecCCCHHHHhhhcCCCCCCCHHHHHHHHHHHHHhcCCcE-EEEEEeeCCCCCCHHHHHHHHH
Q 017203 217 DLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKI-FIEYIMLDGVNDEEQHAHQLGK 287 (375)
Q Consensus 217 ~~~~v~laiSL~a~~~~~r~~i~p~~~~~~~~~vl~~l~~~~~~~g~~v-~i~~vli~gvND~~e~~~~L~~ 287 (375)
...-..+.+.- |.-.+.+-+.+.+-.+......+.++ .++++-.-|++-+++.+.+|++
T Consensus 97 ~~Gad~il~v~------------PyY~k~~~~gl~~hf~~ia~a~~lPvilYN~P~~tg~~l~~e~i~~la~ 156 (299)
T COG0329 97 KLGADGILVVP------------PYYNKPSQEGLYAHFKAIAEAVDLPVILYNIPSRTGVDLSPETIARLAE 156 (299)
T ss_pred hcCCCEEEEeC------------CCCcCCChHHHHHHHHHHHHhcCCCEEEEeCccccCCCCCHHHHHHHhc
Confidence 54322232211 11112234555555555556666654 4566666678888888777776
No 167
>TIGR00683 nanA N-acetylneuraminate lyase. N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate.
Probab=52.16 E-value=2.2e+02 Score=27.19 Aligned_cols=128 Identities=16% Similarity=0.193 Sum_probs=66.5
Q ss_pred CCCHHHHHHHHHHhhhhCC-cceEEEEeC-CC-cccCHHHHHHHHHHhhCC-CCCCCCCeEEEE--eCCchhh--HHHHh
Q 017203 144 NLSSGEIVEQLVHASRLSN-IRNVVFMGM-GE-PLNNYAALVEAVRIMTGL-PFQVSPKRITVS--TVGIVHA--INKFH 215 (375)
Q Consensus 144 ~lt~~ei~~qi~~~~~~~~-i~~Ivf~Gm-GE-Plln~~~l~~~i~~l~~~-g~~i~~~~itis--TnG~~~~--i~~l~ 215 (375)
.++.+.+...+..... .+ +++|++.|. || +.|..++-.++++.+.+. + +...+.+. ++++... .-+.+
T Consensus 17 ~iD~~~~~~~i~~~i~-~G~v~gi~~~GstGE~~~Lt~eEr~~~~~~~~~~~~---~~~pvi~gv~~~~t~~~i~la~~a 92 (290)
T TIGR00683 17 TINEKGLRQIIRHNID-KMKVDGLYVGGSTGENFMLSTEEKKEIFRIAKDEAK---DQIALIAQVGSVNLKEAVELGKYA 92 (290)
T ss_pred CcCHHHHHHHHHHHHh-CCCcCEEEECCcccccccCCHHHHHHHHHHHHHHhC---CCCcEEEecCCCCHHHHHHHHHHH
Confidence 4666777777766554 45 899988875 88 888888777777766544 2 11223333 3333322 22444
Q ss_pred hhCCCceEEEEecCCCHHHHhhhcCCCCCCCHHHHHHHHHHHHHhc-CCcEE-EEEEeeCCCCCCHHHHHHHHH
Q 017203 216 SDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNS-QQKIF-IEYIMLDGVNDEEQHAHQLGK 287 (375)
Q Consensus 216 ~~~~~v~laiSL~a~~~~~r~~i~p~~~~~~~~~vl~~l~~~~~~~-g~~v~-i~~vli~gvND~~e~~~~L~~ 287 (375)
+...-..+.+. .|. +. ..+-+++++-.+.....+ +.++. ++++..-|++-+.+.+.+|++
T Consensus 93 ~~~Gad~v~v~--~P~------y~----~~~~~~i~~yf~~v~~~~~~lpv~lYn~P~~tg~~l~~~~i~~L~~ 154 (290)
T TIGR00683 93 TELGYDCLSAV--TPF------YY----KFSFPEIKHYYDTIIAETGGLNMIVYSIPFLTGVNMGIEQFGELYK 154 (290)
T ss_pred HHhCCCEEEEe--CCc------CC----CCCHHHHHHHHHHHHhhCCCCCEEEEeCccccccCcCHHHHHHHhc
Confidence 44332223321 111 11 123356666665554444 45543 444444456656665665553
No 168
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=51.99 E-value=20 Score=26.77 Aligned_cols=23 Identities=35% Similarity=0.408 Sum_probs=10.5
Q ss_pred HHHHHHHHHHhcCCCEEEEeecC
Q 017203 280 QHAHQLGKLLETFQVVVNLIPFN 302 (375)
Q Consensus 280 e~~~~L~~~l~~~~~~vnLip~n 302 (375)
.++-++-+.+++.+..+.++|-+
T Consensus 12 ~~a~~~ek~lk~~gi~~~liP~P 34 (73)
T PF11823_consen 12 HDAMKAEKLLKKNGIPVRLIPTP 34 (73)
T ss_pred HHHHHHHHHHHHCCCcEEEeCCC
Confidence 34444444444444444444433
No 169
>PRK14842 undecaprenyl pyrophosphate synthase; Provisional
Probab=51.90 E-value=1.8e+02 Score=27.26 Aligned_cols=101 Identities=9% Similarity=0.030 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHHHhcCCc-EEEEEEeeCCCCCCHHHHHHHHHHHhc-----------CCCEEEEeecCCCCCCCCCCCCc
Q 017203 247 LEKLMNALKEYQKNSQQK-IFIEYIMLDGVNDEEQHAHQLGKLLET-----------FQVVVNLIPFNPIGSVSQFRTSS 314 (375)
Q Consensus 247 ~~~vl~~l~~~~~~~g~~-v~i~~vli~gvND~~e~~~~L~~~l~~-----------~~~~vnLip~np~~~~~~~~~~s 314 (375)
.+.+.+.+ .++.+.|++ |++-..=+..++-+.+++..|.+++.. .+++|+++- ....++..-
T Consensus 38 ~~~l~~i~-~~c~~lgI~~vTvYaFS~eN~~R~~~EV~~Lm~L~~~~l~~~~~~~~~~~irv~~iG-----~~~~Lp~~l 111 (241)
T PRK14842 38 ANAIDRLM-DASLEYGLKNISLYAFSTENWKRPITEIRSIFGLLVEFIETRLDTIHARGIRIHHSG-----SRKKLTRTV 111 (241)
T ss_pred HHHHHHHH-HHHHHcCCCEEEEEEeehhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEe-----ChhhCCHHH
Confidence 45566666 566677877 566555566788888898888776653 345666542 112233323
Q ss_pred HHHHHHHHHHHHhcCCceEE--eccCCCcchhcccchhhcc
Q 017203 315 DDKVSSFQKILRGSYNIRTT--VRKQMGQDISGACGQLVVN 353 (375)
Q Consensus 315 ~e~i~~f~~~l~~~~Gi~v~--vR~~~g~di~aaCGql~~~ 353 (375)
.+.+++..+.-+...++.+. +-+.--.||..||-.+...
T Consensus 112 ~~~i~~~e~~T~~~~~~~Lnia~~Yggr~EI~~A~~~~~~~ 152 (241)
T PRK14842 112 LDKIDFAMAKTKKNKNLTVNFCLNYGSHDELLRAAQEVFLA 152 (241)
T ss_pred HHHHHHHHHHhcCCCceEEEEEecCCCHHHHHHHHHHHHHH
Confidence 34444444444433455544 4445456898888777643
No 170
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=51.12 E-value=30 Score=26.78 Aligned_cols=67 Identities=16% Similarity=0.271 Sum_probs=34.0
Q ss_pred CceEEEEeecCCCCCcCccccCCCC-----C--c-ccCC-CHHHHHHHHHHhhhhCCcceEEEEeCCCcccCHHHHHHH
Q 017203 115 PRSTLCISSQVGCKMGCNFCATGTM-----G--F-KSNL-SSGEIVEQLVHASRLSNIRNVVFMGMGEPLNNYAALVEA 184 (375)
Q Consensus 115 ~r~tl~vssq~GCnl~C~fC~~~~~-----~--~-~r~l-t~~ei~~qi~~~~~~~~i~~Ivf~GmGEPlln~~~l~~~ 184 (375)
...++|..+..+|+ .|+||...+. + + ..++ ...++.+.+........+ -.+|.| |+..-.++.+.++
T Consensus 8 ~~vvvf~k~~~~~~-~Cp~C~~ak~~L~~~~i~y~~idv~~~~~~~~~l~~~~g~~tv-P~vfi~-g~~iGG~~~l~~l 83 (90)
T cd03028 8 NPVVLFMKGTPEEP-RCGFSRKVVQILNQLGVDFGTFDILEDEEVRQGLKEYSNWPTF-PQLYVN-GELVGGCDIVKEM 83 (90)
T ss_pred CCEEEEEcCCCCCC-CCcHHHHHHHHHHHcCCCeEEEEcCCCHHHHHHHHHHhCCCCC-CEEEEC-CEEEeCHHHHHHH
Confidence 35778875545565 7999987321 1 1 0111 123444444443322122 345667 7766666655543
No 171
>COG0813 DeoD Purine-nucleoside phosphorylase [Nucleotide transport and metabolism]
Probab=48.67 E-value=2.3e+02 Score=26.36 Aligned_cols=102 Identities=19% Similarity=0.139 Sum_probs=59.4
Q ss_pred ceEEEEeCCCcccCHHHHHHHHHHhhCCCCCCCCCeEEEEeCCchhhHHHHhhhCCCceEEEEecCCCHHHHhhhc--CC
Q 017203 164 RNVVFMGMGEPLNNYAALVEAVRIMTGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIM--PA 241 (375)
Q Consensus 164 ~~Ivf~GmGEPlln~~~l~~~i~~l~~~g~~i~~~~itisTnG~~~~i~~l~~~~~~v~laiSL~a~~~~~r~~i~--p~ 241 (375)
-.|..+|||=|..- -.+.+++....-+ .-|.|-|+|.+.. +...-+|.|+-.|.+++...... |.
T Consensus 58 iSvmg~GmGipS~s-IY~~ELi~~y~Vk------~iIRvGt~Gal~~------~v~l~DvVia~~A~tds~~~~~~f~~~ 124 (236)
T COG0813 58 ISVMGHGMGIPSIS-IYSRELITDYGVK------KIIRVGTCGALSE------DVKLRDVVIAQGASTDSNVNRIRFKPH 124 (236)
T ss_pred EEEEEecCCCccHH-HHHHHHHHHhCcc------eEEEEEccccccC------CcccceEEEeccccCcchhhhcccCcc
Confidence 36788889999886 3566666554322 3488999996531 11113677777776665544332 11
Q ss_pred C-CCCCHHHHHHHHHHHHHhcCCcEEEEEEeeCC--CCCC
Q 017203 242 A-RAFPLEKLMNALKEYQKNSQQKIFIEYIMLDG--VNDE 278 (375)
Q Consensus 242 ~-~~~~~~~vl~~l~~~~~~~g~~v~i~~vli~g--vND~ 278 (375)
. ....-.++++.+.+++++.|.++.+--++--+ +|+.
T Consensus 125 df~~~ad~~Ll~~a~~~A~e~gi~~hvgnv~ssD~FY~~~ 164 (236)
T COG0813 125 DFAPIADFELLEKAYETAKELGIDTHVGNVFSSDLFYNPD 164 (236)
T ss_pred cccccCCHHHHHHHHHHHHHhCCceeeeeeeeeecccCCC
Confidence 1 01122355555557888889888775554444 3444
No 172
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=48.55 E-value=2.8e+02 Score=27.43 Aligned_cols=182 Identities=9% Similarity=0.082 Sum_probs=96.2
Q ss_pred cccCCCHHHHHHHHHHhhhhCCcceEEEEeCCCcccCHHHHHHHHHHhhCCCCCCCCCeEEEEeCCchhhHHHHhhhCCC
Q 017203 141 FKSNLSSGEIVEQLVHASRLSNIRNVVFMGMGEPLNNYAALVEAVRIMTGLPFQVSPKRITVSTVGIVHAINKFHSDLPG 220 (375)
Q Consensus 141 ~~r~lt~~ei~~qi~~~~~~~~i~~Ivf~GmGEPlln~~~l~~~i~~l~~~g~~i~~~~itisTnG~~~~i~~l~~~~~~ 220 (375)
....++.++.++-+....+ .+++.|-+ |=|.+.. .-.++++.+.+.+.+ ..+..-.......++...+.+.
T Consensus 16 ~~~~~s~~~k~~ia~~L~~-~Gv~~IEv---G~p~~~~-~~~e~i~~i~~~~~~---~~i~~~~r~~~~di~~a~~~g~- 86 (365)
T TIGR02660 16 PGVAFTAAEKLAIARALDE-AGVDELEV---GIPAMGE-EERAVIRAIVALGLP---ARLMAWCRARDADIEAAARCGV- 86 (365)
T ss_pred CCCCCCHHHHHHHHHHHHH-cCCCEEEE---eCCCCCH-HHHHHHHHHHHcCCC---cEEEEEcCCCHHHHHHHHcCCc-
Confidence 3456888888777666554 35666655 3466663 334566777655321 2233222233345555555432
Q ss_pred ceEEEEecCCCHHHHhhhcCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEEeeCCCCCCHHHHHHHHHHHhcCCCE-EEEe
Q 017203 221 LNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVV-VNLI 299 (375)
Q Consensus 221 v~laiSL~a~~~~~r~~i~p~~~~~~~~~vl~~l~~~~~~~g~~v~i~~vli~gvND~~e~~~~L~~~l~~~~~~-vnLi 299 (375)
..+.+.+...+......+ ..+....++.+.+.+ +++++.|..+.+.+.- .--.+++.+.++++.+...++. +++
T Consensus 87 ~~i~i~~~~Sd~~~~~~~-~~s~~e~l~~~~~~i-~~ak~~g~~v~~~~ed--~~r~~~~~l~~~~~~~~~~Ga~~i~l- 161 (365)
T TIGR02660 87 DAVHISIPVSDLQIEAKL-RKDRAWVLERLARLV-SFARDRGLFVSVGGED--ASRADPDFLVELAEVAAEAGADRFRF- 161 (365)
T ss_pred CEEEEEEccCHHHHHHHh-CcCHHHHHHHHHHHH-HHHHhCCCEEEEeecC--CCCCCHHHHHHHHHHHHHcCcCEEEE-
Confidence 235555544333333333 222223344555666 4667778777665443 2223567888888888877764 333
Q ss_pred ecCCCCCCCCCCCCcHHHHHHHHHHHHhcCCc--eEEeccCCCcch
Q 017203 300 PFNPIGSVSQFRTSSDDKVSSFQKILRGSYNI--RTTVRKQMGQDI 343 (375)
Q Consensus 300 p~np~~~~~~~~~~s~e~i~~f~~~l~~~~Gi--~v~vR~~~g~di 343 (375)
-.+ .+ ...++++.++.+.+++..++ .+..-+..|.-+
T Consensus 162 --~DT-~G----~~~P~~v~~lv~~l~~~~~v~l~~H~HNd~GlA~ 200 (365)
T TIGR02660 162 --ADT-VG----ILDPFSTYELVRALRQAVDLPLEMHAHNDLGMAT 200 (365)
T ss_pred --ccc-CC----CCCHHHHHHHHHHHHHhcCCeEEEEecCCCChHH
Confidence 332 12 23456677777766633444 345556666533
No 173
>cd01965 Nitrogenase_MoFe_beta_like Nitrogenase_MoFe_beta_like: Nitrogenase MoFe protein, beta subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. This group contains the beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (Fe
Probab=46.98 E-value=99 Score=31.27 Aligned_cols=32 Identities=19% Similarity=0.367 Sum_probs=24.9
Q ss_pred EEeeCCCCCCHHHHHHHHHHHhcCCCEEEEee
Q 017203 269 YIMLDGVNDEEQHAHQLGKLLETFQVVVNLIP 300 (375)
Q Consensus 269 ~vli~gvND~~e~~~~L~~~l~~~~~~vnLip 300 (375)
..++.+.+....++.+|.++++.+|..++.++
T Consensus 158 VNlig~~~~~~~d~~el~~lL~~~Gl~v~~~~ 189 (428)
T cd01965 158 VNLLPGFPLTPGDVREIKRILEAFGLEPIILP 189 (428)
T ss_pred EEEECCCCCCccCHHHHHHHHHHcCCCEEEec
Confidence 44566766555678999999999999888765
No 174
>COG0436 Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]
Probab=46.40 E-value=2e+02 Score=28.80 Aligned_cols=47 Identities=17% Similarity=0.264 Sum_probs=30.7
Q ss_pred HHHHHHHHHHhcCCCE--EEEeecCCCCCCCCCCCCcHHHHHHHHHHHHhcCCceE
Q 017203 280 QHAHQLGKLLETFQVV--VNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRT 333 (375)
Q Consensus 280 e~~~~L~~~l~~~~~~--vnLip~np~~~~~~~~~~s~e~i~~f~~~l~~~~Gi~v 333 (375)
-+++.|.+.+.. +.+ +--.|-||+| .-.++++++++.++++ ++++-+
T Consensus 151 ~d~~~l~~~i~~-ktk~i~ln~P~NPTG-----av~~~~~l~~i~~~a~-~~~i~i 199 (393)
T COG0436 151 PDLEDLEAAITP-KTKAIILNSPNNPTG-----AVYSKEELKAIVELAR-EHDIII 199 (393)
T ss_pred CCHHHHHhhcCc-cceEEEEeCCCCCcC-----cCCCHHHHHHHHHHHH-HcCeEE
Confidence 345556555555 344 2224778875 2457899999999998 688764
No 175
>cd01966 Nitrogenase_NifN_1 Nitrogenase_nifN1: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=44.41 E-value=1.4e+02 Score=30.17 Aligned_cols=32 Identities=19% Similarity=0.364 Sum_probs=26.2
Q ss_pred EEeeCCCCCCHHHHHHHHHHHhcCCCEEEEee
Q 017203 269 YIMLDGVNDEEQHAHQLGKLLETFQVVVNLIP 300 (375)
Q Consensus 269 ~vli~gvND~~e~~~~L~~~l~~~~~~vnLip 300 (375)
+-++++.|-++.|+++|.++++..|.+++++|
T Consensus 160 VNiig~~~~~~~D~~eik~lL~~~Gl~v~~l~ 191 (417)
T cd01966 160 VNLLPGAHLTPGDVEELKDIIEAFGLEPIILP 191 (417)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHcCCceEEec
Confidence 34667777678899999999999999887764
No 176
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=43.94 E-value=2.9e+02 Score=26.27 Aligned_cols=129 Identities=14% Similarity=0.171 Sum_probs=66.3
Q ss_pred CCCHHHHHHHHHHhhhhCCcceEEEEeC-CC-cccCHHHHHHHHHHhhCC-CCCCCCCeEEEEeC--CchhhH--HHHhh
Q 017203 144 NLSSGEIVEQLVHASRLSNIRNVVFMGM-GE-PLNNYAALVEAVRIMTGL-PFQVSPKRITVSTV--GIVHAI--NKFHS 216 (375)
Q Consensus 144 ~lt~~ei~~qi~~~~~~~~i~~Ivf~Gm-GE-Plln~~~l~~~i~~l~~~-g~~i~~~~itisTn--G~~~~i--~~l~~ 216 (375)
.++.+.+...+.......++++|++.|. || +.|..++-.++++.+.+. + +...+...+. .+...+ .+.++
T Consensus 20 ~iD~~~~~~li~~l~~~~Gv~gi~v~GstGE~~~Ls~eEr~~~~~~~~~~~~---~~~~viagvg~~~t~~ai~~a~~a~ 96 (293)
T PRK04147 20 QIDEQGLRRLVRFNIEKQGIDGLYVGGSTGEAFLLSTEEKKQVLEIVAEEAK---GKVKLIAQVGSVNTAEAQELAKYAT 96 (293)
T ss_pred CcCHHHHHHHHHHHHhcCCCCEEEECCCccccccCCHHHHHHHHHHHHHHhC---CCCCEEecCCCCCHHHHHHHHHHHH
Confidence 4666666666665543247889888884 89 888877777777766544 2 1122333332 232222 23333
Q ss_pred hCCCceEEEEecCCCHHHHhhhcCCCCCCCHHHHHHHHHHHHHhcCCcEEE-EEEeeCCCCCCHHHHHHHHH
Q 017203 217 DLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFI-EYIMLDGVNDEEQHAHQLGK 287 (375)
Q Consensus 217 ~~~~v~laiSL~a~~~~~r~~i~p~~~~~~~~~vl~~l~~~~~~~g~~v~i-~~vli~gvND~~e~~~~L~~ 287 (375)
...-..+.+.- |. -.+.+-+.+++-.+..+...+.++.+ +++...|++-+++.+.+|++
T Consensus 97 ~~Gad~v~v~~--P~----------y~~~~~~~l~~~f~~va~a~~lPv~iYn~P~~tg~~l~~~~l~~L~~ 156 (293)
T PRK04147 97 ELGYDAISAVT--PF----------YYPFSFEEICDYYREIIDSADNPMIVYNIPALTGVNLSLDQFNELFT 156 (293)
T ss_pred HcCCCEEEEeC--Cc----------CCCCCHHHHHHHHHHHHHhCCCCEEEEeCchhhccCCCHHHHHHHhc
Confidence 33222233321 10 01123355555555555556666544 33334466666666666654
No 177
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=43.82 E-value=1.7e+02 Score=27.95 Aligned_cols=65 Identities=14% Similarity=0.199 Sum_probs=35.2
Q ss_pred CCCCCHHHHHHHHHHHhcCCCEEEEeecCCCCCCCCCCCCcHHHHHHHHHHHHhcCCceEEeccCCCcchh
Q 017203 274 GVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDIS 344 (375)
Q Consensus 274 gvND~~e~~~~L~~~l~~~~~~vnLip~np~~~~~~~~~~s~e~i~~f~~~l~~~~Gi~v~vR~~~g~di~ 344 (375)
|+..+.+++.++++.+.+.|+.--++ ..|. |.+++.+++.++.+.+.+..++++.+=+..|.++.
T Consensus 80 gv~~~t~~ai~~a~~a~~~Gadav~~-~pP~-----y~~~s~~~i~~~f~~v~~a~~~pvilYn~~g~~l~ 144 (296)
T TIGR03249 80 GVGGNTSDAIEIARLAEKAGADGYLL-LPPY-----LINGEQEGLYAHVEAVCESTDLGVIVYQRDNAVLN 144 (296)
T ss_pred ecCccHHHHHHHHHHHHHhCCCEEEE-CCCC-----CCCCCHHHHHHHHHHHHhccCCCEEEEeCCCCCCC
Confidence 33345677888888888888763222 3444 22345566555444443245566554443455544
No 178
>PRK14477 bifunctional nitrogenase molybdenum-cofactor biosynthesis protein NifE/NifN; Provisional
Probab=43.55 E-value=1.1e+02 Score=34.41 Aligned_cols=32 Identities=16% Similarity=0.342 Sum_probs=27.4
Q ss_pred EEeeCCCCCCHHHHHHHHHHHhcCCCEEEEee
Q 017203 269 YIMLDGVNDEEQHAHQLGKLLETFQVVVNLIP 300 (375)
Q Consensus 269 ~vli~gvND~~e~~~~L~~~l~~~~~~vnLip 300 (375)
+.++++.|-+..++++|.+++..+|..++.+|
T Consensus 647 VNli~~~~~~~gD~~eik~lL~~~Gl~v~~vp 678 (917)
T PRK14477 647 VNILPGAHLTPADVEEIKEIVEAFGLDPVVVP 678 (917)
T ss_pred EEEeCCCCCChhhHHHHHHHHHHcCCceEEec
Confidence 44668887778899999999999999988876
No 179
>TIGR01286 nifK nitrogenase molybdenum-iron protein beta chain. This model represents the majority of known sequences of the nitrogenase molybdenum-iron protein beta subunit. A distinct clade in a phylogenetic tree contains molybdenum-iron, vanadium-iron, and iron-iron forms of nitrogenase beta subunit and is excluded from this model. Nitrogenase, also called dinitrogenase, is responsible for nitrogen fixation. Note: the trusted cutoff score has recently been lowered to include an additional family in which the beta subunit is shorter by about 50 amino acids at the N-terminus. In species with the shorter form of the beta subunit, the alpha subunit has a novel insert of similar length.
Probab=42.69 E-value=2e+02 Score=30.14 Aligned_cols=31 Identities=13% Similarity=0.234 Sum_probs=26.0
Q ss_pred EeeCCCCCCHHHHHHHHHHHhcCCCEEEEee
Q 017203 270 IMLDGVNDEEQHAHQLGKLLETFQVVVNLIP 300 (375)
Q Consensus 270 vli~gvND~~e~~~~L~~~l~~~~~~vnLip 300 (375)
-+++|++....++++|.+++..+|+.++++|
T Consensus 224 Nii~g~~~~~gd~~eikrlL~~~Gi~~~~l~ 254 (515)
T TIGR01286 224 NIIPGFETYIGNFREIKRILSLMGVGYTLLS 254 (515)
T ss_pred EEECCCCCCchhHHHHHHHHHHcCCCeEEcc
Confidence 3578887667899999999999999988765
No 180
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=42.01 E-value=3.7e+02 Score=26.83 Aligned_cols=178 Identities=12% Similarity=0.107 Sum_probs=97.0
Q ss_pred ccCCCHHHHHHHHHHhhhhCCcceEEEEeCCCcccCHHHHHHHHHHhhCCCCCCCCCeEEEEeCC--chhhHHHHhhhCC
Q 017203 142 KSNLSSGEIVEQLVHASRLSNIRNVVFMGMGEPLNNYAALVEAVRIMTGLPFQVSPKRITVSTVG--IVHAINKFHSDLP 219 (375)
Q Consensus 142 ~r~lt~~ei~~qi~~~~~~~~i~~Ivf~GmGEPlln~~~l~~~i~~l~~~g~~i~~~~itisTnG--~~~~i~~l~~~~~ 219 (375)
...++.++.++-+....+ .+++.|-+ |-|.++.+ -.+.++.+.+.++ ...+.+-+ ....++...+.+.
T Consensus 20 ~~~~s~e~k~~ia~~L~~-~GV~~IE~---G~p~~~~~-~~e~i~~i~~~~~-----~~~i~~~~r~~~~di~~a~~~g~ 89 (378)
T PRK11858 20 GVVFTNEEKLAIARMLDE-IGVDQIEA---GFPAVSED-EKEAIKAIAKLGL-----NASILALNRAVKSDIDASIDCGV 89 (378)
T ss_pred CCCCCHHHHHHHHHHHHH-hCCCEEEE---eCCCcChH-HHHHHHHHHhcCC-----CeEEEEEcccCHHHHHHHHhCCc
Confidence 456888887776666544 35666654 46888744 3456777765552 23333332 2334555555432
Q ss_pred CceEEEEecCCCHHHHhhhcCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEEeeCCCCCCHHHHHHHHHHHhcCCCE-EEE
Q 017203 220 GLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVV-VNL 298 (375)
Q Consensus 220 ~v~laiSL~a~~~~~r~~i~p~~~~~~~~~vl~~l~~~~~~~g~~v~i~~vli~gvND~~e~~~~L~~~l~~~~~~-vnL 298 (375)
..+.+++...+...+..+ .......++.+.+.+ +++++.|..|.+... ..--.+++.+.++++.+...++. |++
T Consensus 90 -~~i~i~~~~Sd~h~~~~~-~~s~~~~l~~~~~~v-~~a~~~G~~v~~~~e--d~~r~~~~~l~~~~~~~~~~Ga~~I~l 164 (378)
T PRK11858 90 -DAVHIFIATSDIHIKHKL-KKTREEVLERMVEAV-EYAKDHGLYVSFSAE--DASRTDLDFLIEFAKAAEEAGADRVRF 164 (378)
T ss_pred -CEEEEEEcCCHHHHHHHh-CCCHHHHHHHHHHHH-HHHHHCCCeEEEEec--cCCCCCHHHHHHHHHHHHhCCCCEEEE
Confidence 246666655444444444 222223344444555 456677877666533 22223577888888888888765 333
Q ss_pred eecCCCCCCCCCCCCcHHHHHHHHHHHHhcCCc--eEEeccCCCcc
Q 017203 299 IPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNI--RTTVRKQMGQD 342 (375)
Q Consensus 299 ip~np~~~~~~~~~~s~e~i~~f~~~l~~~~Gi--~v~vR~~~g~d 342 (375)
-.+ .+ ...++++.++.+.+++..++ .+..-+..|.-
T Consensus 165 ---~DT-~G----~~~P~~v~~lv~~l~~~~~~~l~~H~Hnd~GlA 202 (378)
T PRK11858 165 ---CDT-VG----ILDPFTMYELVKELVEAVDIPIEVHCHNDFGMA 202 (378)
T ss_pred ---ecc-CC----CCCHHHHHHHHHHHHHhcCCeEEEEecCCcCHH
Confidence 333 11 22345666666666533343 34555666653
No 181
>PF06415 iPGM_N: BPG-independent PGAM N-terminus (iPGM_N); InterPro: IPR011258 This family represents the N-terminal region of the 2,3-bisphosphoglycerate-independent phosphoglycerate mutase (or phosphoglyceromutase or BPG-independent PGAM) protein (5.4.2.1 from EC). The family is found in conjunction with Metalloenzyme (located in the C-terminal region of the protein). ; GO: 0004619 phosphoglycerate mutase activity, 0030145 manganese ion binding, 0006007 glucose catabolic process, 0005737 cytoplasm; PDB: 1EQJ_A 1EJJ_A 1O99_A 1O98_A 3IGZ_B 3IGY_B 3NVL_A 2IFY_A.
Probab=41.16 E-value=2.5e+02 Score=26.03 Aligned_cols=79 Identities=19% Similarity=0.208 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHHHhcCCcEEEEEEeeC-CCCCCHHHHHHHHHHHhcCCCE-EEEeecCCCCCCCCCCCC-cHHHHHHHHH
Q 017203 247 LEKLMNALKEYQKNSQQKIFIEYIMLD-GVNDEEQHAHQLGKLLETFQVV-VNLIPFNPIGSVSQFRTS-SDDKVSSFQK 323 (375)
Q Consensus 247 ~~~vl~~l~~~~~~~g~~v~i~~vli~-gvND~~e~~~~L~~~l~~~~~~-vnLip~np~~~~~~~~~~-s~e~i~~f~~ 323 (375)
.+.+.+++ +.+++.+.++.+-=++-+ ||....+|+.+|+++++..+++ |.+-.|.. +.+.+|- ...-++++.+
T Consensus 13 n~~l~~~~-~~~k~~~~~lHl~GLlSdGGVHSh~~Hl~al~~~a~~~gv~~V~vH~f~D---GRDt~P~S~~~yl~~l~~ 88 (223)
T PF06415_consen 13 NPVLLEAI-EHAKKNGGRLHLMGLLSDGGVHSHIDHLFALIKLAKKQGVKKVYVHAFTD---GRDTPPKSALKYLEELEE 88 (223)
T ss_dssp SHHHHHHH-HHHCCTT--EEEEEEESS-SSS--HHHHHHHHHHHHHTT-SEEEEEEEE----SSSS-TTTHHHHHHHHHH
T ss_pred CHHHHHHH-HHHHhcCCeEEEEEEecCCCccccHHHHHHHHHHHHHcCCCEEEEEEecC---CCCCCcchHHHHHHHHHH
Confidence 35556666 566777888988888877 4889999999999999999864 65555543 2343333 3567788888
Q ss_pred HHHhcCC
Q 017203 324 ILRGSYN 330 (375)
Q Consensus 324 ~l~~~~G 330 (375)
.+. +.|
T Consensus 89 ~l~-~~~ 94 (223)
T PF06415_consen 89 KLA-EIG 94 (223)
T ss_dssp HHH-HHT
T ss_pred HHH-hhC
Confidence 887 443
No 182
>cd01974 Nitrogenase_MoFe_beta Nitrogenase_MoFe_beta: Nitrogenase MoFe protein, beta subunit. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Molybdenum (Mo-) nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. This group contains the beta subunit of the MoFe protein. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=41.08 E-value=2.5e+02 Score=28.44 Aligned_cols=31 Identities=19% Similarity=0.412 Sum_probs=22.5
Q ss_pred EeeCCCCCCHHHHHHHHHHHhcCCCEEEEee
Q 017203 270 IMLDGVNDEEQHAHQLGKLLETFQVVVNLIP 300 (375)
Q Consensus 270 vli~gvND~~e~~~~L~~~l~~~~~~vnLip 300 (375)
-++++++...+++.+|.++++.+|..++++|
T Consensus 164 Nli~~~~~~~d~~~el~~lL~~~Gl~~~~~~ 194 (435)
T cd01974 164 NIIPGFDTYAGNMREIKRLLELMGVDYTILP 194 (435)
T ss_pred EEECCCCCCcchHHHHHHHHHHcCCCEEEec
Confidence 3567766443349999999999999887653
No 183
>cd06840 PLPDE_III_Bif_AspK_DapDC Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Bifunctional Aspartate Kinase/Diaminopimelate Decarboxylase. Bifunctional aspartate kinase/diaminopimelate decarboxylase (AspK/DapDC, EC 4.1.1.20/EC 2.7.2.4) typically exists in bacteria. These proteins contain an N-terminal AspK region and a C-terminal DapDC region, which contains a PLP-binding TIM-barrel domain followed by beta-sandwich domain, characteristic of fold type III PLP-dependent enzymes. Members of this subfamily have not been fully characterized. Based on their sequence, these proteins may catalyze both reactions catalyzed by AspK and DapDC. AspK catalyzes the phosphorylation of L-aspartate to produce 4-phospho-L-aspartate while DapDC participates in the last step of lysine biosynthesis, the conversion of meso-2,6-diaminoheptanedioate to L-lysine.
Probab=39.79 E-value=3.8e+02 Score=26.43 Aligned_cols=175 Identities=15% Similarity=0.185 Sum_probs=81.1
Q ss_pred cceEEEEeCCCcccCHHHHHHHHHHhhCCCCCCCCCeEEEEeCCchhhHHHHhhhCCCceEEEEecCCCHH-HHhhhc--
Q 017203 163 IRNVVFMGMGEPLNNYAALVEAVRIMTGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQD-VRCQIM-- 239 (375)
Q Consensus 163 i~~Ivf~GmGEPlln~~~l~~~i~~l~~~g~~i~~~~itisTnG~~~~i~~l~~~~~~v~laiSL~a~~~~-~r~~i~-- 239 (375)
-+.|+|+| |.-..+.+..+ .+.| ..++++ ....+.++.+..+...+.+-++..... ....++
T Consensus 81 ~~~Iif~g---p~K~~~~l~~a----~~~g-----v~i~~D---s~~El~~i~~~~~~~~v~lRi~~~~~~~~~~~~~~~ 145 (368)
T cd06840 81 PRRVLFTP---NFAARSEYEQA----LELG-----VNVTVD---NLHPLREWPELFRGREVILRIDPGQGEGHHKHVRTG 145 (368)
T ss_pred cceEEEcC---CCCCHHHHHHH----HHCC-----CEEEEC---CHHHHHHHHHhcccCCEEEEECCCCCCCCCCceecC
Confidence 46899999 65554444443 3345 335443 233455555443333443333321110 011111
Q ss_pred -CCCC-CCCHHHHHHHHHHHHHhcCCcE-EEEEEeeCCCCCCHHHHHHHHHHHhcCC---CEEEEeecCCCCCCCCC---
Q 017203 240 -PAAR-AFPLEKLMNALKEYQKNSQQKI-FIEYIMLDGVNDEEQHAHQLGKLLETFQ---VVVNLIPFNPIGSVSQF--- 310 (375)
Q Consensus 240 -p~~~-~~~~~~vl~~l~~~~~~~g~~v-~i~~vli~gvND~~e~~~~L~~~l~~~~---~~vnLip~np~~~~~~~--- 310 (375)
+..+ +.+.+++.+.+ +.++..+.++ .+.+-+--++.| .+...++++.+..+. ..+..+-+-.-. +.+|
T Consensus 146 ~~~skFG~~~~~~~~~l-~~~~~~~l~l~GlhfH~GS~~~~-~~~~~~~~~~~~~l~~~~~~~~~idiGGGf-~~~y~~~ 222 (368)
T cd06840 146 GPESKFGLDVDELDEAR-DLAKKAGIIVIGLHAHSGSGVED-TDHWARHGDYLASLARHFPAVRILNVGGGL-GIPEAPG 222 (368)
T ss_pred CCCCCCCCCHHHHHHHH-HHHHhCCCcEEEEEEECCCCCCC-HHHHHHHHHHHHHHHHhcCCCCEEEecCcc-cCCCCCC
Confidence 1111 34677777776 3445556554 344433333333 444555544443321 112222111000 0111
Q ss_pred -CCCcHHHHHHHHHHHHhcCCceEEeccCCCcchhcccchhhccccC
Q 017203 311 -RTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPD 356 (375)
Q Consensus 311 -~~~s~e~i~~f~~~l~~~~Gi~v~vR~~~g~di~aaCGql~~~~~~ 356 (375)
.+++.+.+.+..+.+..... .+++.-+.|+-+.+.||-|..+...
T Consensus 223 ~~~~~~~~~~~~i~~~~~~~~-~~~l~~EPGR~lva~ag~lvt~V~~ 268 (368)
T cd06840 223 GRPIDLDALDAALAAAKAAHP-QYQLWMEPGRFIVAESGVLLARVTQ 268 (368)
T ss_pred CCCCCHHHHHHHHHHHHhhCC-CcEEEEecCceeeecceEEEEEEEE
Confidence 23445444443333321221 3677778999999999999887643
No 184
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=39.75 E-value=3.9e+02 Score=26.48 Aligned_cols=181 Identities=14% Similarity=0.109 Sum_probs=101.4
Q ss_pred cccCCCHHHHHHHHHHhhhhCCcceEEEEeCCCcccCHHHHHHHHHHhhCCCCCCCCCeEEEEeCCchhhHHHHhhhCCC
Q 017203 141 FKSNLSSGEIVEQLVHASRLSNIRNVVFMGMGEPLNNYAALVEAVRIMTGLPFQVSPKRITVSTVGIVHAINKFHSDLPG 220 (375)
Q Consensus 141 ~~r~lt~~ei~~qi~~~~~~~~i~~Ivf~GmGEPlln~~~l~~~i~~l~~~g~~i~~~~itisTnG~~~~i~~l~~~~~~ 220 (375)
....++.++.++-+....+ .+++.|-+ |-|..+.+ -.+.++.+.+.+.+ ..+..-+......+++..+.+.
T Consensus 15 ~~~~~s~~~k~~ia~~L~~-~Gv~~IEv---G~p~~~~~-~~e~i~~i~~~~~~---~~v~~~~r~~~~di~~a~~~g~- 85 (363)
T TIGR02090 15 PGVSLTVEQKVEIARKLDE-LGVDVIEA---GFPIASEG-EFEAIKKISQEGLN---AEICSLARALKKDIDKAIDCGV- 85 (363)
T ss_pred CCCCCCHHHHHHHHHHHHH-cCCCEEEE---eCCCCChH-HHHHHHHHHhcCCC---cEEEEEcccCHHHHHHHHHcCc-
Confidence 3456888888877766554 46676664 45777643 45777777766422 3344333434445666665542
Q ss_pred ceEEEEecCCCHHHHhhhcCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEEeeCCCCCCHHHHHHHHHHHhcCCCE-EEEe
Q 017203 221 LNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVV-VNLI 299 (375)
Q Consensus 221 v~laiSL~a~~~~~r~~i~p~~~~~~~~~vl~~l~~~~~~~g~~v~i~~vli~gvND~~e~~~~L~~~l~~~~~~-vnLi 299 (375)
..+.+.+.+.+......+ ..+....++.+.+.+ +++++.|..+.+.+.- ..-.+++.+.++++.+...++. +++
T Consensus 86 ~~i~i~~~~Sd~~~~~~~-~~~~~~~~~~~~~~i-~~ak~~G~~v~~~~ed--a~r~~~~~l~~~~~~~~~~g~~~i~l- 160 (363)
T TIGR02090 86 DSIHTFIATSPIHLKYKL-KKSRDEVLEKAVEAV-EYAKEHGLIVEFSAED--ATRTDIDFLIKVFKRAEEAGADRINI- 160 (363)
T ss_pred CEEEEEEcCCHHHHHHHh-CCCHHHHHHHHHHHH-HHHHHcCCEEEEEEee--cCCCCHHHHHHHHHHHHhCCCCEEEE-
Confidence 245566544433333333 222223456666666 4667778776655432 2234578888888888888765 333
Q ss_pred ecCCCCCCCCCCCCcHHHHHHHHHHHHhcCCc--eEEeccCCCcc
Q 017203 300 PFNPIGSVSQFRTSSDDKVSSFQKILRGSYNI--RTTVRKQMGQD 342 (375)
Q Consensus 300 p~np~~~~~~~~~~s~e~i~~f~~~l~~~~Gi--~v~vR~~~g~d 342 (375)
-.+ .+ ...++++.++.+.+++..++ .+..-+..|.-
T Consensus 161 --~DT-~G----~~~P~~v~~li~~l~~~~~~~l~~H~Hnd~GlA 198 (363)
T TIGR02090 161 --ADT-VG----VLTPQKMEELIKKLKENVKLPISVHCHNDFGLA 198 (363)
T ss_pred --eCC-CC----ccCHHHHHHHHHHHhcccCceEEEEecCCCChH
Confidence 222 11 23456677777777633343 34455565643
No 185
>smart00642 Aamy Alpha-amylase domain.
Probab=39.48 E-value=1.3e+02 Score=26.29 Aligned_cols=21 Identities=5% Similarity=0.150 Sum_probs=16.7
Q ss_pred cHHHHHHHHHHHHhcCCceEEe
Q 017203 314 SDDKVSSFQKILRGSYNIRTTV 335 (375)
Q Consensus 314 s~e~i~~f~~~l~~~~Gi~v~v 335 (375)
+.++++++.+.+. +.|+.|.+
T Consensus 68 t~~d~~~lv~~~h-~~Gi~vil 88 (166)
T smart00642 68 TMEDFKELVDAAH-ARGIKVIL 88 (166)
T ss_pred CHHHHHHHHHHHH-HCCCEEEE
Confidence 4588888888888 79998753
No 186
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=38.98 E-value=2.2e+02 Score=27.15 Aligned_cols=65 Identities=11% Similarity=0.111 Sum_probs=33.1
Q ss_pred CCCCCHHHHHHHHHHHhcCCCEEEEeecCCCCCCCCCCCCcHHHHHHHHHHHHhcCCceEEeccCCCcchh
Q 017203 274 GVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDIS 344 (375)
Q Consensus 274 gvND~~e~~~~L~~~l~~~~~~vnLip~np~~~~~~~~~~s~e~i~~f~~~l~~~~Gi~v~vR~~~g~di~ 344 (375)
|+..+.++..++++.+++.|+.--++ .+|. |..++.+.+.++.+.+.+..++++.+=+..|.++.
T Consensus 75 gv~~~t~~~i~~a~~a~~~Gad~v~~-~pP~-----y~~~~~~~i~~~f~~v~~~~~~pi~lYn~~g~~l~ 139 (289)
T cd00951 75 GAGYGTATAIAYAQAAEKAGADGILL-LPPY-----LTEAPQEGLYAHVEAVCKSTDLGVIVYNRANAVLT 139 (289)
T ss_pred ecCCCHHHHHHHHHHHHHhCCCEEEE-CCCC-----CCCCCHHHHHHHHHHHHhcCCCCEEEEeCCCCCCC
Confidence 33345567777777777777652222 2333 12344555555444443245566555444455544
No 187
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=38.67 E-value=2.4e+02 Score=27.09 Aligned_cols=65 Identities=11% Similarity=0.161 Sum_probs=36.2
Q ss_pred CCCCCCHHHHHHHHHHHhcCCCE-EEEeecCCCCCCCCCCCCcHHHHHHHHHHHHhcCCceEEeccCCCcchh
Q 017203 273 DGVNDEEQHAHQLGKLLETFQVV-VNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDIS 344 (375)
Q Consensus 273 ~gvND~~e~~~~L~~~l~~~~~~-vnLip~np~~~~~~~~~~s~e~i~~f~~~l~~~~Gi~v~vR~~~g~di~ 344 (375)
.|+..+.+++-++++.+++.|+. +-+ ..|. |..++.+.+.++.+.+.+..++.+.+=+..|.++.
T Consensus 81 ~gv~~~t~~~i~~~~~a~~~Gadav~~--~pP~-----y~~~~~~~i~~~f~~va~~~~lpi~lYn~~g~~l~ 146 (303)
T PRK03620 81 AGAGGGTAQAIEYAQAAERAGADGILL--LPPY-----LTEAPQEGLAAHVEAVCKSTDLGVIVYNRDNAVLT 146 (303)
T ss_pred EecCCCHHHHHHHHHHHHHhCCCEEEE--CCCC-----CCCCCHHHHHHHHHHHHHhCCCCEEEEcCCCCCCC
Confidence 34444667788888888888775 322 2343 22345565655554443245666655544455544
No 188
>COG1035 FrhB Coenzyme F420-reducing hydrogenase, beta subunit [Energy production and conversion]
Probab=38.31 E-value=61 Score=31.91 Aligned_cols=83 Identities=10% Similarity=0.093 Sum_probs=48.9
Q ss_pred CHHHHHHHHHHcCCCc------------chHHHHHHHHHhCC------CCCCCCCCCCCH-HHHHHHHhcCCCCCcccce
Q 017203 10 DGGIIRAEFEKAGIKQ------------HFIPLIWKYVIENP------NCEWDEFPSLPS-AAYSLLRSKFKPLTSTLHS 70 (375)
Q Consensus 10 ~~~~l~~~~~~~g~~~------------~~~~qi~~~~~~~~------~~~~~~~~~l~~-~~r~~l~~~~~~~~~~~~~ 70 (375)
+...|++...+.|.++ .|.-|-+....++. .-.+-=|.|.+- .+.+.|.+.+.+....+.+
T Consensus 129 ~l~~L~ea~~~~g~~rvavvG~PC~i~avrk~~~~~~~~~~~~~~i~~~iGlfC~e~f~y~~l~~~l~e~~gvd~~dV~k 208 (332)
T COG1035 129 NLSALKEAVRKYGLERVAVVGTPCQIQAVRKLQKFDLGLKHRREKIVYVIGLFCMENFSYEGLKKFLEEDLGVDPEDVEK 208 (332)
T ss_pred hHHHHHHHHhhcCCceEEEeecchHHHHHHHHhhccccccccccceEEEEeeecCCCcCHHHHHHHHHHHhCCCHHHeEE
Confidence 4666777776666433 23334444443321 111223455543 3577788888987777777
Q ss_pred EEeCCCCCeEEEEEEecCCCeEEEEEeee
Q 017203 71 VVDSSDDVTTKLLVKLQNGGFVEAVIMRY 99 (375)
Q Consensus 71 ~~~s~dg~t~k~l~~~~dg~~ve~v~i~~ 99 (375)
.... .| ||.+++.|| |.+.+|-
T Consensus 209 ~di~-kG---k~~v~~~dG---~~~~~~l 230 (332)
T COG1035 209 MDIR-KG---KFVVELKDG---EVKEIPL 230 (332)
T ss_pred EEee-Cc---eEEEEecCC---cEEEEEh
Confidence 6543 56 999999999 4444543
No 189
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=38.23 E-value=3.4e+02 Score=25.32 Aligned_cols=180 Identities=11% Similarity=0.076 Sum_probs=93.6
Q ss_pred ccCCCHHHHHHHHHHhhhhCCcceEEEEeCCCcccCHHHHHHHHHHhhCCCCCCCCCeEEEEeCCchhhHHHHhhhCCCc
Q 017203 142 KSNLSSGEIVEQLVHASRLSNIRNVVFMGMGEPLNNYAALVEAVRIMTGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 221 (375)
Q Consensus 142 ~r~lt~~ei~~qi~~~~~~~~i~~Ivf~GmGEPlln~~~l~~~i~~l~~~g~~i~~~~itisTnG~~~~i~~l~~~~~~v 221 (375)
...++.++.++-+....+ .+++.|-+. =|.+... -.+.++.+.+.+.+ .++..-.......++...+.+. .
T Consensus 14 ~~~~~~~~k~~i~~~L~~-~Gv~~iE~g---~p~~~~~-~~e~~~~l~~~~~~---~~~~~~~r~~~~~v~~a~~~g~-~ 84 (259)
T cd07939 14 GVAFSREEKLAIARALDE-AGVDEIEVG---IPAMGEE-EREAIRAIVALGLP---ARLIVWCRAVKEDIEAALRCGV-T 84 (259)
T ss_pred CCCCCHHHHHHHHHHHHH-cCCCEEEEe---cCCCCHH-HHHHHHHHHhcCCC---CEEEEeccCCHHHHHHHHhCCc-C
Confidence 356788887776666544 466666552 2555422 23566666654321 2333222222334544444432 2
Q ss_pred eEEEEecCCCHHHHhhhcCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEEeeCCCCCCHHHHHHHHHHHhcCCCEEEEeec
Q 017203 222 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPF 301 (375)
Q Consensus 222 ~laiSL~a~~~~~r~~i~p~~~~~~~~~vl~~l~~~~~~~g~~v~i~~vli~gvND~~e~~~~L~~~l~~~~~~vnLip~ 301 (375)
.+.+.+...+...+..+ ..+....++.+.+.+ +++++.|..+.+....... -+++.+.++++.+.+.++.. +-+
T Consensus 85 ~i~i~~~~s~~~~~~~~-~~~~~~~~~~~~~~i-~~a~~~G~~v~~~~~~~~~--~~~~~~~~~~~~~~~~G~~~--i~l 158 (259)
T cd07939 85 AVHISIPVSDIHLAHKL-GKDRAWVLDQLRRLV-GRAKDRGLFVSVGAEDASR--ADPDFLIEFAEVAQEAGADR--LRF 158 (259)
T ss_pred EEEEEEecCHHHHHHHh-CCCHHHHHHHHHHHH-HHHHHCCCeEEEeeccCCC--CCHHHHHHHHHHHHHCCCCE--EEe
Confidence 35555533333333333 112222344555555 4566778877766654433 25788888888888887642 223
Q ss_pred CCCCCCCCCCCCcHHHHHHHHHHHHhcCCce--EEeccCCCc
Q 017203 302 NPIGSVSQFRTSSDDKVSSFQKILRGSYNIR--TTVRKQMGQ 341 (375)
Q Consensus 302 np~~~~~~~~~~s~e~i~~f~~~l~~~~Gi~--v~vR~~~g~ 341 (375)
..+ .+ ...++++.++...+++.+++. +..-+..|.
T Consensus 159 ~DT-~G----~~~P~~v~~lv~~l~~~~~~~l~~H~Hn~~Gl 195 (259)
T cd07939 159 ADT-VG----ILDPFTTYELIRRLRAATDLPLEFHAHNDLGL 195 (259)
T ss_pred CCC-CC----CCCHHHHHHHHHHHHHhcCCeEEEEecCCCCh
Confidence 333 12 233467777777766444443 445556664
No 190
>COG1453 Predicted oxidoreductases of the aldo/keto reductase family [General function prediction only]
Probab=37.89 E-value=1.9e+02 Score=28.93 Aligned_cols=109 Identities=12% Similarity=0.131 Sum_probs=68.7
Q ss_pred cceEEEEeCCCcccC-HH--HHHHHHHHhhCCCCCCCCCeEEEEeCCchhhHHHHhhhCCCce-EEEEecCCCHHHHhhh
Q 017203 163 IRNVVFMGMGEPLNN-YA--ALVEAVRIMTGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLN-LAVSLHAPVQDVRCQI 238 (375)
Q Consensus 163 i~~Ivf~GmGEPlln-~~--~l~~~i~~l~~~g~~i~~~~itisTnG~~~~i~~l~~~~~~v~-laiSL~a~~~~~r~~i 238 (375)
++-..+-|+++=+.. .+ .+.++++.+++.| .-+++.+||.|..+.+.+....++ .+ +.+-.+-.+.+..
T Consensus 111 ~D~yliH~l~~e~~~k~~~~g~~df~~kak~eG---kIr~~GFSfHgs~e~~~~iv~a~~-~dfvqlq~ny~d~~n~--- 183 (391)
T COG1453 111 IDYYLIHGLNTETWEKIERLGVFDFLEKAKAEG---KIRNAGFSFHGSTEVFKEIVDAYP-WDFVQLQYNYIDQKNQ--- 183 (391)
T ss_pred hhhhhhccccHHHHHHHHccChHHHHHHHHhcC---cEEEeeecCCCCHHHHHHHHhcCC-cceEEeeeeeeccchh---
Confidence 455566666663322 11 2578899999886 237899999999988888888876 44 4565555543321
Q ss_pred cCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEEeeCC--CCCCHHHHHHHHHHH
Q 017203 239 MPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDG--VNDEEQHAHQLGKLL 289 (375)
Q Consensus 239 ~p~~~~~~~~~vl~~l~~~~~~~g~~v~i~~vli~g--vND~~e~~~~L~~~l 289 (375)
...+++ +++.+.|..|+|--++-.| .+.-++.+.+|.+-+
T Consensus 184 ----------~~~~~l-~~A~~~~~gI~IMeP~~gG~l~~~vP~~~~~l~~~~ 225 (391)
T COG1453 184 ----------AGTEGL-KYAASKGLGIFIMEPLDGGGLLYNVPEKLEELCRPA 225 (391)
T ss_pred ----------cccHHH-HHHHhCCCcEEEEeeCCCCCcccCCCHHHHHHHHhc
Confidence 113455 5666778888887777665 343445666655433
No 191
>PRK14476 nitrogenase molybdenum-cofactor biosynthesis protein NifN; Provisional
Probab=37.89 E-value=2.8e+02 Score=28.48 Aligned_cols=32 Identities=19% Similarity=0.339 Sum_probs=25.0
Q ss_pred EEeeCCCCCCHHHHHHHHHHHhcCCCEEEEee
Q 017203 269 YIMLDGVNDEEQHAHQLGKLLETFQVVVNLIP 300 (375)
Q Consensus 269 ~vli~gvND~~e~~~~L~~~l~~~~~~vnLip 300 (375)
+-++++.|-++.++++|.++++.+|..++++|
T Consensus 171 VNiIgg~~~~~~D~~elk~lL~~~Gl~v~~lp 202 (455)
T PRK14476 171 VNVLPGSHLTPGDIEELREIIEAFGLEPIILP 202 (455)
T ss_pred EEEECCCCCCcccHHHHHHHHHHcCCceEEec
Confidence 34556666567789999999999999887765
No 192
>TIGR02803 ExbD_1 TonB system transport protein ExbD, group 1. Members of this family are Gram-negative bacterial inner membrane proteins, generally designated ExbD, related to the TolR family modeled by TIGRFAMs TIGR02801. Members always are encoded next to a protein designated ExbB (TIGR02797), related to the TolQ family modeled by TIGRFAMs TIGR02796. ExbD and ExbB together form a proton channel through which they can harness the proton-motive force to energize TonB, which in turn energizes TonB-dependent receptors in the outer membrane. TonB-dependent receptors with known specificity tend to import siderophores or vitamin B12. A TonB system and Tol-Pal system often will co-exist in a single bacterial genome.
Probab=37.71 E-value=1.9e+02 Score=23.58 Aligned_cols=56 Identities=9% Similarity=0.197 Sum_probs=40.0
Q ss_pred CCCHHHHHHHHHHhhhhCCcceEEEEeCCCcccCHHHHHHHHHHhhCCCCCCCCCeEEEEeC
Q 017203 144 NLSSGEIVEQLVHASRLSNIRNVVFMGMGEPLNNYAALVEAVRIMTGLPFQVSPKRITVSTV 205 (375)
Q Consensus 144 ~lt~~ei~~qi~~~~~~~~i~~Ivf~GmGEPlln~~~l~~~i~~l~~~g~~i~~~~itisTn 205 (375)
..+.+++..++........-..|++.+ +.-..|..+.++++.+++.|+ .++.+-|+
T Consensus 66 ~v~~~~L~~~l~~~~~~~~~~~v~I~a--D~~~~~~~vv~v~d~~~~aG~----~~v~l~t~ 121 (122)
T TIGR02803 66 PVARETLGTALDALTEGDKDTTIFFRA--DKTVDYGDLMKVMNLLRQAGY----LKIGLVGL 121 (122)
T ss_pred cCCHHHHHHHHHHHHhcCCCceEEEEc--CCCCCHHHHHHHHHHHHHcCC----CEEEEEec
Confidence 466778877776654322223566665 777788999999999998874 57888886
No 193
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=37.41 E-value=2.2e+02 Score=27.04 Aligned_cols=60 Identities=12% Similarity=0.247 Sum_probs=33.7
Q ss_pred eeCCCCC-CHHHHHHHHHHHhcCCCE-EEEeecCCCCCCCCCCCCcHHHHHHHHHHHHhcCCceEEecc
Q 017203 271 MLDGVND-EEQHAHQLGKLLETFQVV-VNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRK 337 (375)
Q Consensus 271 li~gvND-~~e~~~~L~~~l~~~~~~-vnLip~np~~~~~~~~~~s~e~i~~f~~~l~~~~Gi~v~vR~ 337 (375)
++.|+.. +.+++.++++.+++.|+. +-++ .|. |-+++.+++.++.+.+.+..++++.+=+
T Consensus 70 vi~gv~~~s~~~~i~~a~~a~~~Gad~v~v~--pP~-----y~~~~~~~i~~~~~~i~~~~~~pi~lYn 131 (285)
T TIGR00674 70 VIAGTGSNATEEAISLTKFAEDVGADGFLVV--TPY-----YNKPTQEGLYQHFKAIAEEVDLPIILYN 131 (285)
T ss_pred EEEeCCCccHHHHHHHHHHHHHcCCCEEEEc--CCc-----CCCCCHHHHHHHHHHHHhcCCCCEEEEE
Confidence 3345543 567788888888888876 4443 233 1234556665555444324566655443
No 194
>TIGR02932 vnfK_nitrog V-containing nitrogenase, beta subunit. Nitrogenase is the enzyme of biological nitrogen fixation. The most wide-spread and most efficient nitrogenase contains a molybdenum cofactor. This protein family, VnfK, represents the beta subunit of the vanadium (V)-containing alternative nitrogenase. It is homologous to NifK and AnfK, of the molybdenum-containing and the iron (Fe)-only types, respectively.
Probab=36.27 E-value=2.8e+02 Score=28.46 Aligned_cols=30 Identities=13% Similarity=0.150 Sum_probs=24.4
Q ss_pred EeeCCCCCCHHHHHHHHHHHhcCCCEEEEee
Q 017203 270 IMLDGVNDEEQHAHQLGKLLETFQVVVNLIP 300 (375)
Q Consensus 270 vli~gvND~~e~~~~L~~~l~~~~~~vnLip 300 (375)
-++++.+. ..|+++|.+++..+|.++|.+|
T Consensus 170 Nii~~~~~-~gD~~eik~lL~~~Gl~vn~l~ 199 (457)
T TIGR02932 170 NVFPGWVN-PGDVVLLKHYFSEMGVDANILM 199 (457)
T ss_pred EEECCCCC-hHHHHHHHHHHHHcCCCEEEEe
Confidence 45677654 6789999999999999998874
No 195
>cd05015 SIS_PGI_1 Phosphoglucose isomerase (PGI) contains two SIS (Sugar ISomerase) domains. This classification is based on the alignment of the first SIS domain. PGI is a multifunctional enzyme which as an intracellular dimer catalyzes the reversible isomerization of glucose 6-phosphate to fructose 6-phosphate. As an extracellular protein, PGI also has functions equivalent to neuroleukin (NLK), autocrine motility factor (AMF), and maturation factor (MF). Evidence suggests that PGI, NLK, AMF, and MF are closely related or identical. NLK is a neurotrophic growth factor that promotes regeneration and survival of neurons. The dimeric form of NLK has isomerase function, whereas its monomeric form carries out neurotrophic activity. AMF is a cytokine that stimulates cell migration and metastasis. MF mediates the differentiation of human myeloid leukemic HL-60 cells to terminal monocytic cells.
Probab=36.06 E-value=2.8e+02 Score=23.77 Aligned_cols=68 Identities=16% Similarity=0.156 Sum_probs=38.5
Q ss_pred CcceEEEEeCCCcccCHHHHHHHHHHhhCCCCCCCCCeEEEEeCCchhhHHHHhhh-CCCce--EEEEecCCCHHH
Q 017203 162 NIRNVVFMGMGEPLNNYAALVEAVRIMTGLPFQVSPKRITVSTVGIVHAINKFHSD-LPGLN--LAVSLHAPVQDV 234 (375)
Q Consensus 162 ~i~~Ivf~GmGEPlln~~~l~~~i~~l~~~g~~i~~~~itisTnG~~~~i~~l~~~-~~~v~--laiSL~a~~~~~ 234 (375)
++++|+|.|||--.+-++.+.+++......+ ..+.+.+|--...+..+... .+.-+ +.+|-.+.+.|+
T Consensus 19 ~~~~iv~~GiGGS~lg~~~~~~~~~~~~~~~-----~~i~~~~~~D~~~~~~~~~~~~~~~tlvi~iSkSG~T~Et 89 (158)
T cd05015 19 KITDVVVIGIGGSDLGPRAVYEALKPYFKGG-----LRLHFVSNVDPDDLAELLKKLDPETTLFIVISKSGTTLET 89 (158)
T ss_pred CCCEEEEEecCccHHHHHHHHHHHHhhccCC-----ceEEEEeCCCHHHHHHHHHhCCcccEEEEEEECCcCCHHH
Confidence 5799999999998776666666666553323 34555555322222333332 22334 345666655554
No 196
>TIGR00666 PBP4 D-alanyl-D-alanine carboxypeptidase, serine-type, PBP4 family. In E. coli, this protein is known as penicillin binding protein 4 (dacB). A signal sequence is cleaved from a precursor form. The protein is described as periplasmic in E. coli (Gram-negative) and extracellular in Actinomadura R39 (Gram-positive). Unlike some other proteins with similar activity, it does not form transpeptidation. It is not essential for viability. This family is related to class A beta-lactamases.
Probab=35.24 E-value=52 Score=32.48 Aligned_cols=30 Identities=17% Similarity=0.131 Sum_probs=26.7
Q ss_pred ceEEEEeCCCcccCHHHHHHHHHHhhCCCC
Q 017203 164 RNVVFMGMGEPLNNYAALVEAVRIMTGLPF 193 (375)
Q Consensus 164 ~~Ivf~GmGEPlln~~~l~~~i~~l~~~g~ 193 (375)
.++++.|.|+|++..+.+.++++.+++.|+
T Consensus 55 G~L~i~G~GDP~L~~~~L~~la~~l~~~Gi 84 (345)
T TIGR00666 55 GNLVLRFGGDPTLKRQDIRNLVATLKKSGV 84 (345)
T ss_pred ccEEEEeecCCCcCHHHHHHHHHHHHHcCC
Confidence 478899999999999999999999998774
No 197
>PRK01076 L-rhamnose isomerase; Provisional
Probab=34.96 E-value=2.2e+02 Score=28.78 Aligned_cols=119 Identities=11% Similarity=0.077 Sum_probs=70.1
Q ss_pred ccCCCHHHHHHHHHHhhhhCCc-ceEEEEe----CCCccc----CHHHHHHHHHHhhCCCCCCCCCeEEEEeCCchhhHH
Q 017203 142 KSNLSSGEIVEQLVHASRLSNI-RNVVFMG----MGEPLN----NYAALVEAVRIMTGLPFQVSPKRITVSTVGIVHAIN 212 (375)
Q Consensus 142 ~r~lt~~ei~~qi~~~~~~~~i-~~Ivf~G----mGEPll----n~~~l~~~i~~l~~~g~~i~~~~itisTnG~~~~i~ 212 (375)
++..+++|..+.+..+....+. ..|.+-- -||.-- .++.+...++..++.|+++. +++|-+
T Consensus 67 G~aR~~~El~~D~~~~~~L~pg~~~vnLH~~y~~~~~~vdrd~~~p~~f~~w~~~Ak~~GlglD-----fNpn~F----- 136 (419)
T PRK01076 67 GKARNADELRADLEKALSLIPGKHRLNLHAIYLESDTPVDRDEIEPEHFKNWVEWAKENGLGLD-----FNPTCF----- 136 (419)
T ss_pred CCCCCHHHHHHHHHHHHHhcCCCCceeeecccccCCCcccccccCcccHHHHHHHHHHcCCCcC-----cCcccC-----
Confidence 4567889999888776553221 2222222 133221 24556677888888885443 333322
Q ss_pred HHhhhCCCceEEEEecCCCHHHHhhhcCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEEeeCCCCCCH
Q 017203 213 KFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEE 279 (375)
Q Consensus 213 ~l~~~~~~v~laiSL~a~~~~~r~~i~p~~~~~~~~~vl~~l~~~~~~~g~~v~i~~vli~gvND~~ 279 (375)
..+.....+||-+++++.|+..+- ...+.++....+-++.|.+..+++-+-.|.||.+
T Consensus 137 ----sh~~~k~G~SLs~pD~~iR~fwI~-----H~~~c~~I~~~~g~~lGs~~~~niWipDG~kd~P 194 (419)
T PRK01076 137 ----SHPLSADGFTLSHPDPEIRQFWIE-----HCKASRRISAYFGEELGTPCVMNIWIPDGMKDIP 194 (419)
T ss_pred ----CCccccCCCcccCCCHHHHHHHHH-----HHHHHHHHHHHHHHHhCCccceeEEeCCCCCCCc
Confidence 223345667899999999998741 1233444444445578888777777777888543
No 198
>COG1168 MalY Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism]
Probab=34.39 E-value=5e+02 Score=26.15 Aligned_cols=152 Identities=20% Similarity=0.286 Sum_probs=79.5
Q ss_pred CCHHHHHHHHHHhhhhCCcceEEEEeCCCcccCHHHHHHHHHHhhCC-CCCCCCCeEEEEeCCchhhHHHHhhhC--CCc
Q 017203 145 LSSGEIVEQLVHASRLSNIRNVVFMGMGEPLNNYAALVEAVRIMTGL-PFQVSPKRITVSTVGIVHAINKFHSDL--PGL 221 (375)
Q Consensus 145 lt~~ei~~qi~~~~~~~~i~~Ivf~GmGEPlln~~~l~~~i~~l~~~-g~~i~~~~itisTnG~~~~i~~l~~~~--~~v 221 (375)
.++.+|++.+.+.... ++. |-|...-+....+....+++ ++.+.+-.+ +.+-|++|.+.-..+.+ +..
T Consensus 38 ~~pp~i~~Al~~rvdh-Gvf-------GY~~~~~~~~~ai~~w~~~r~~~~i~~e~i-~~~p~VVpgi~~~I~~~T~~gd 108 (388)
T COG1168 38 PTPPEIIEALRERVDH-GVF-------GYPYGSDELYAAIAHWFKQRHQWEIKPEWI-VFVPGVVPGISLAIRALTKPGD 108 (388)
T ss_pred CCCHHHHHHHHHHHhc-CCC-------CCCCCCHHHHHHHHHHHHHhcCCCCCcceE-EEcCcchHhHHHHHHHhCcCCC
Confidence 4677888887765432 222 56655533444445556666 777766664 44566777665444432 223
Q ss_pred eEEEEecCCCHHHHhhhcCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEEeeCCCCCCH-HHHHHHHHHHhcCCCEEEE--
Q 017203 222 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEE-QHAHQLGKLLETFQVVVNL-- 298 (375)
Q Consensus 222 ~laiSL~a~~~~~r~~i~p~~~~~~~~~vl~~l~~~~~~~g~~v~i~~vli~gvND~~-e~~~~L~~~l~~~~~~vnL-- 298 (375)
.+.|. +|- -.+|-. .++..|+++. +.+|..+ |+.. =|+++|-+-+++-.+++-+
T Consensus 109 ~Vvi~--tPv------------Y~PF~~-------~i~~n~R~~i-~~pL~~~-~~~y~iD~~~LE~~~~~~~vkl~iLC 165 (388)
T COG1168 109 GVVIQ--TPV------------YPPFYN-------AIKLNGRKVI-ENPLVED-DGRYEIDFDALEKAFVDERVKLFILC 165 (388)
T ss_pred eeEec--CCC------------chHHHH-------HHhhcCcEEE-ecccccc-CCcEEecHHHHHHHHhcCCccEEEEe
Confidence 44432 221 012222 2233444432 3333321 1111 1466666555555444333
Q ss_pred eecCCCCCCCCCCCCcHHHHHHHHHHHHhcCCceEE
Q 017203 299 IPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTT 334 (375)
Q Consensus 299 ip~np~~~~~~~~~~s~e~i~~f~~~l~~~~Gi~v~ 334 (375)
.|-||.| +-=+.+++.++.++++ ++|+.|.
T Consensus 166 nPHNP~G-----rvwt~eeL~~i~elc~-kh~v~VI 195 (388)
T COG1168 166 NPHNPTG-----RVWTKEELRKIAELCL-RHGVRVI 195 (388)
T ss_pred CCCCCCC-----ccccHHHHHHHHHHHH-HcCCEEE
Confidence 3666664 2236889999999998 7888764
No 199
>cd01320 ADA Adenosine deaminase (ADA) is a monomeric zinc dependent enzyme which catalyzes the irreversible hydrolytic deamination of both adenosine, as well as desoxyadenosine, to ammonia and inosine or desoxyinosine, respectively. ADA plays an important role in the purine pathway. Low, as well as high levels of ADA activity have been linked to several diseases.
Probab=33.75 E-value=4.3e+02 Score=25.28 Aligned_cols=83 Identities=16% Similarity=0.133 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHhcCCcEEEEEEeeCCCCCCHHHHHHHHHHHhcCCCEEEEeecCCCCCCCCCCCCcHHHHHHHHHHHHh
Q 017203 248 EKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRG 327 (375)
Q Consensus 248 ~~vl~~l~~~~~~~g~~v~i~~vli~gvND~~e~~~~L~~~l~~~~~~vnLip~np~~~~~~~~~~s~e~i~~f~~~l~~ 327 (375)
+.+++++.+..++.|.++.+-+.+.+. ..++.+.+..+++...+.. .++-+...+ .+. ..+.+.+..+.+.++
T Consensus 111 ~~~~~ai~~~~~~~gi~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~-~vvg~~l~~--~~~-~~~~~~~~~~~~~A~- 183 (325)
T cd01320 111 EAVLRGLDEAEAEFGIKARLILCGLRH--LSPESAQETLELALKYRDK-GVVGFDLAG--DEV-GFPPEKFVRAFQRAR- 183 (325)
T ss_pred HHHHHHHHHHHHhcCCeEEEEEEecCC--CCHHHHHHHHHHHHhccCC-CEEEeecCC--CCC-CCCHHHHHHHHHHHH-
Confidence 344556666566678887776666553 2456788888877655332 122222211 111 125678888888888
Q ss_pred cCCceEEecc
Q 017203 328 SYNIRTTVRK 337 (375)
Q Consensus 328 ~~Gi~v~vR~ 337 (375)
++|+.+++--
T Consensus 184 ~~g~~v~~H~ 193 (325)
T cd01320 184 EAGLRLTAHA 193 (325)
T ss_pred HCCCceEEeC
Confidence 6888876654
No 200
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=32.48 E-value=4.6e+02 Score=25.15 Aligned_cols=125 Identities=14% Similarity=0.111 Sum_probs=62.2
Q ss_pred CCCHHHHHHHHHHhhhhCCcceEEEEe-CCC-cccCHHHHHHHHHHhhCC-CCCCCCCeEEEEeCCchh-hH--HHHhhh
Q 017203 144 NLSSGEIVEQLVHASRLSNIRNVVFMG-MGE-PLNNYAALVEAVRIMTGL-PFQVSPKRITVSTVGIVH-AI--NKFHSD 217 (375)
Q Consensus 144 ~lt~~ei~~qi~~~~~~~~i~~Ivf~G-mGE-Plln~~~l~~~i~~l~~~-g~~i~~~~itisTnG~~~-~i--~~l~~~ 217 (375)
.++.+.+-..+..... .++++|++.| .|| ++|..++-.++++.+.+. + +...+-+.+.+... .+ .+.++.
T Consensus 24 ~iD~~~l~~li~~l~~-~Gv~Gi~~~GstGE~~~Lt~eEr~~~~~~~~~~~~---~~~pvi~gv~~~t~~~i~~~~~a~~ 99 (303)
T PRK03620 24 SFDEAAYREHLEWLAP-YGAAALFAAGGTGEFFSLTPDEYSQVVRAAVETTA---GRVPVIAGAGGGTAQAIEYAQAAER 99 (303)
T ss_pred CcCHHHHHHHHHHHHH-cCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhC---CCCcEEEecCCCHHHHHHHHHHHHH
Confidence 4666766666665554 4788888877 577 555666666666655433 2 01223333322222 22 233333
Q ss_pred CCCceEEEEecCCCHHHHhhhcCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEEeeCCCCCCHHHHHHHH
Q 017203 218 LPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLG 286 (375)
Q Consensus 218 ~~~v~laiSL~a~~~~~r~~i~p~~~~~~~~~vl~~l~~~~~~~g~~v~i~~vli~gvND~~e~~~~L~ 286 (375)
..-..+.+ + .|. + ...+-+.+.+-.+.....++.+|.+- - .+|++-+++.+.+|+
T Consensus 100 ~Gadav~~-~-pP~------y----~~~~~~~i~~~f~~va~~~~lpi~lY-n-~~g~~l~~~~l~~L~ 154 (303)
T PRK03620 100 AGADGILL-L-PPY------L----TEAPQEGLAAHVEAVCKSTDLGVIVY-N-RDNAVLTADTLARLA 154 (303)
T ss_pred hCCCEEEE-C-CCC------C----CCCCHHHHHHHHHHHHHhCCCCEEEE-c-CCCCCCCHHHHHHHH
Confidence 32122322 1 110 0 01233556666655556666665552 2 456666666666665
No 201
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=32.16 E-value=4.3e+02 Score=24.78 Aligned_cols=47 Identities=11% Similarity=0.061 Sum_probs=21.1
Q ss_pred CCCHHHHHHHHHHhhhh-CCcceEEEEeCCCcccCHHHHHHHHHHhhCCC
Q 017203 144 NLSSGEIVEQLVHASRL-SNIRNVVFMGMGEPLNNYAALVEAVRIMTGLP 192 (375)
Q Consensus 144 ~lt~~ei~~qi~~~~~~-~~i~~Ivf~GmGEPlln~~~l~~~i~~l~~~g 192 (375)
..+.+.+++.+...++. ..+. +++|+.=.|.+++ .+.++++.+++.|
T Consensus 68 G~~~~~~~~~v~~ir~~~~~~p-lv~m~Y~Npi~~~-G~e~f~~~~~~aG 115 (256)
T TIGR00262 68 GMTPEKCFELLKKVRQKHPNIP-IGLLTYYNLIFRK-GVEEFYAKCKEVG 115 (256)
T ss_pred CCCHHHHHHHHHHHHhcCCCCC-EEEEEeccHHhhh-hHHHHHHHHHHcC
Confidence 34555555555554432 1222 2244445555543 3444444444433
No 202
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=31.77 E-value=40 Score=26.83 Aligned_cols=37 Identities=24% Similarity=0.360 Sum_probs=27.6
Q ss_pred cceEEEEeCCCcccCHHHHHHHHHHhhCCCCCCCCCeEEEEeCCch
Q 017203 163 IRNVVFMGMGEPLNNYAALVEAVRIMTGLPFQVSPKRITVSTVGIV 208 (375)
Q Consensus 163 i~~Ivf~GmGEPlln~~~l~~~i~~l~~~g~~i~~~~itisTnG~~ 208 (375)
++++...| ++|+- ...++++.+++.| .++.+-||...
T Consensus 5 ~dGvl~~g-~~~ip---ga~e~l~~L~~~g-----~~~~~lTNns~ 41 (101)
T PF13344_consen 5 LDGVLYNG-NEPIP---GAVEALDALRERG-----KPVVFLTNNSS 41 (101)
T ss_dssp STTTSEET-TEE-T---THHHHHHHHHHTT-----SEEEEEES-SS
T ss_pred CccEeEeC-CCcCc---CHHHHHHHHHHcC-----CCEEEEeCCCC
Confidence 46777788 88865 4678888998887 78999999864
No 203
>PF05853 DUF849: Prokaryotic protein of unknown function (DUF849); InterPro: IPR008567 This family consists of several hypothetical prokaryotic proteins with no known function.; PDB: 3C6C_A 2Y7G_B 2Y7F_B 2Y7D_D 2Y7E_B 3LOT_A 3FA5_B 3NO5_C 3E02_A 3E49_B ....
Probab=31.32 E-value=4.6e+02 Score=24.85 Aligned_cols=162 Identities=14% Similarity=0.093 Sum_probs=83.4
Q ss_pred CCCHHHHHHHHHHhhhh-CCcceEEEE--eCCCcccCHHHHHHHHHHhhCCCCCCCCCeEEEEeCCc-hhhH-HHHh---
Q 017203 144 NLSSGEIVEQLVHASRL-SNIRNVVFM--GMGEPLNNYAALVEAVRIMTGLPFQVSPKRITVSTVGI-VHAI-NKFH--- 215 (375)
Q Consensus 144 ~lt~~ei~~qi~~~~~~-~~i~~Ivf~--GmGEPlln~~~l~~~i~~l~~~g~~i~~~~itisTnG~-~~~i-~~l~--- 215 (375)
.+|++||+++.....+. ..+-++..= --|.|.+.++.+.+.++.+++.. +..-+.++|.|. .... +++.
T Consensus 22 P~tpeEia~~A~~c~~AGAa~vH~H~R~~~~G~~s~d~~~~~e~~~~IR~~~---pd~iv~~Ttg~~~~~~~~~R~~~v~ 98 (272)
T PF05853_consen 22 PITPEEIAADAVACYEAGAAIVHIHARDDEDGRPSLDPELYAEVVEAIRAAC---PDLIVQPTTGGGGGPDPEERLAHVE 98 (272)
T ss_dssp --SHHHHHHHHHHHHHHTESEEEE-EE-TTTS-EE--HHHHHHHHHHHHHHS---TTSEEEEESSTTTTSGHHHHCTHHH
T ss_pred CCCHHHHHHHHHHHHHcCCcEEEeecCCCCCCCcCCCHHHHHHHHHHHHHHC---CCeEEEeCCCCCCCCCHHHHHHHHH
Confidence 47999999999875542 223344443 12889999998999999998762 125688888773 2221 2221
Q ss_pred hhCCCceEEEEecCCCHHHHhhhcCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEEeeCCCCCCHHHHHHHHHHHhc-C--
Q 017203 216 SDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLET-F-- 292 (375)
Q Consensus 216 ~~~~~v~laiSL~a~~~~~r~~i~p~~~~~~~~~vl~~l~~~~~~~g~~v~i~~vli~gvND~~e~~~~L~~~l~~-~-- 292 (375)
...| ....+++.+.+-..++..+ ..+.+.+.+.+ +.+++.|.++.++. . +..++..+..+++. +
T Consensus 99 ~~~p-d~asl~~gs~n~~~~~~~~----~n~~~~~~~~~-~~~~e~Gi~pe~ev--~-----d~~~l~~~~~l~~~G~l~ 165 (272)
T PF05853_consen 99 AWKP-DMASLNPGSMNFGTRDRVY----INTPADARELA-RRMRERGIKPEIEV--F-----DPGHLRNARRLIEKGLLP 165 (272)
T ss_dssp HH---SEEEEE-S-EEESGGCSEE-------HHHHHHHH-HHHHHTT-EEEEEE--S-----SHHHHHHHHHHHHTTSS-
T ss_pred hcCC-CeEEecccccccccCCcee----cCCHHHHHHHH-HHHHHcCCeEEEEE--E-----cHHHHHHHHHHHHCCCCC
Confidence 1122 2233444433221122222 12456666666 44567776666553 3 56788888887763 2
Q ss_pred -CCEEEEeecCCCCCCCCCCCCcHHHHHHHHHHHH
Q 017203 293 -QVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILR 326 (375)
Q Consensus 293 -~~~vnLip~np~~~~~~~~~~s~e~i~~f~~~l~ 326 (375)
+..+++.-=.+. . .+++.+.+..+.+.+.
T Consensus 166 ~p~~~~~vlG~~~----g-~~~~~~~l~~~l~~l~ 195 (272)
T PF05853_consen 166 GPLLVNFVLGVPG----G-MPATPENLLAMLDMLP 195 (272)
T ss_dssp SSEEEEEEES-TT----S---S-HHHHHHHHHHHH
T ss_pred CCeEEEEcccCCC----C-CCCCHHHHHHHHHhcC
Confidence 123454431221 2 2677888888888876
No 204
>TIGR01283 nifE nitrogenase molybdenum-iron cofactor biosynthesis protein NifE. This protein is part of the NifEN complex involved in biosynthesis of the molybdenum-iron cofactor used by the homologous NifDK complex of nitrogenase. In a few species, the protein is found as a NifEN fusion protein.
Probab=31.30 E-value=4.9e+02 Score=26.57 Aligned_cols=71 Identities=13% Similarity=0.142 Sum_probs=39.9
Q ss_pred EEeeCCCCCCHHHHHHHHHHHhcCCCEEEE-eecCCC-C-----CCCCCCC-CcHHHHHHHHHHHHhcCCceEEeccCCC
Q 017203 269 YIMLDGVNDEEQHAHQLGKLLETFQVVVNL-IPFNPI-G-----SVSQFRT-SSDDKVSSFQKILRGSYNIRTTVRKQMG 340 (375)
Q Consensus 269 ~vli~gvND~~e~~~~L~~~l~~~~~~vnL-ip~np~-~-----~~~~~~~-~s~e~i~~f~~~l~~~~Gi~v~vR~~~g 340 (375)
+-++.++|. ..++.+|.++++.+|..++. ++-... . +.....- ........+.+.|++++|++.......|
T Consensus 200 VNiiG~~~~-~~d~~el~~lL~~~Gl~v~~~~~~~~s~eei~~~~~A~lniv~~~~~~~~~a~~L~e~~GiP~~~~~~~G 278 (456)
T TIGR01283 200 INLIGEFNV-AGEFWHVKPLLEKLGIRVLATITGDSRYAEVQTAHRAKLNMVQCSKSMINLARKMEEKYGIPYFEGSFYG 278 (456)
T ss_pred EEEEcCCCC-cccHHHHHHHHHHcCCeEEEEeCCCCcHHHHHhcccCcEEEEECHhHHHHHHHHHHHHcCCCEEecCCCc
Confidence 345556553 35678999999999998874 443321 0 0001100 0233446677888767898754433455
No 205
>COG0276 HemH Protoheme ferro-lyase (ferrochelatase) [Coenzyme metabolism]
Probab=30.93 E-value=3.9e+02 Score=26.19 Aligned_cols=106 Identities=15% Similarity=0.205 Sum_probs=57.1
Q ss_pred CCcccCHHHHHHHHHHhhCC-CCCCCCCeEEEEe-CCch----hh----HHHHhhhCCCceEEEEecCCCHHHHhhhcCC
Q 017203 172 GEPLNNYAALVEAVRIMTGL-PFQVSPKRITVST-VGIV----HA----INKFHSDLPGLNLAVSLHAPVQDVRCQIMPA 241 (375)
Q Consensus 172 GEPlln~~~l~~~i~~l~~~-g~~i~~~~itisT-nG~~----~~----i~~l~~~~~~v~laiSL~a~~~~~r~~i~p~ 241 (375)
|+|. ...+.+..+.+.+. |+..+...++..+ .|-. |. +++|.+.+. -.+.|=-=+...+.-+.
T Consensus 202 GDpY--~~q~~~t~~li~e~lg~~~~~~~~~~QS~~G~~~WL~P~t~~~l~~L~~~g~-k~iiv~pigFvsDhlET---- 274 (320)
T COG0276 202 GDPY--PQQCQETTRLIAEALGLPEEEYDLTFQSRFGPEPWLQPYTDDLLEELGEKGV-KKIIVVPIGFVSDHLET---- 274 (320)
T ss_pred CCch--HHHHHHHHHHHHHHcCCCchheeEEeecCCCCCCCCCCCHHHHHHHHHhcCC-CeEEEECCchhhhhHHH----
Confidence 5663 45788888888876 6545556677776 2321 32 345554432 12322111111111111
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCcEEEEEEeeCCCCCCHHHHHHHHHHHhcC
Q 017203 242 ARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETF 292 (375)
Q Consensus 242 ~~~~~~~~vl~~l~~~~~~~g~~v~i~~vli~gvND~~e~~~~L~~~l~~~ 292 (375)
+.++=.-.+....+.|. ..|..+|-+||+++.+..|+++++..
T Consensus 275 -----L~Eid~e~~e~~~~~Gg---~~y~rip~lN~~p~fi~~la~lv~~~ 317 (320)
T COG0276 275 -----LYEIDHEYRELAEEAGG---KKYVRIPCLNDSPEFIDALADLVREL 317 (320)
T ss_pred -----HHHHHHHHHHHHHHhCC---ccEEecCCCCCCHHHHHHHHHHHHHH
Confidence 22222222233344442 34667788999999999999998753
No 206
>COG2875 CobM Precorrin-4 methylase [Coenzyme metabolism]
Probab=30.90 E-value=1.3e+02 Score=28.22 Aligned_cols=49 Identities=31% Similarity=0.444 Sum_probs=39.0
Q ss_pred ccCCCHHHHHHHHHHhhhhCCcceEEEEeCCCcccCHHHHHHHHHHhhCCCC
Q 017203 142 KSNLSSGEIVEQLVHASRLSNIRNVVFMGMGEPLNNYAALVEAVRIMTGLPF 193 (375)
Q Consensus 142 ~r~lt~~ei~~qi~~~~~~~~i~~Ivf~GmGEPlln~~~l~~~i~~l~~~g~ 193 (375)
...++.+||++.+..+.+. +-+-+-+-. |+|.+ |-.+.+-++.+.+.|+
T Consensus 56 Sa~~tLeeIi~~m~~a~~~-Gk~VvRLhS-GDpsi-YgA~~EQm~~L~~~gI 104 (254)
T COG2875 56 SASLTLEEIIDLMVDAVRE-GKDVVRLHS-GDPSI-YGALAEQMRELEALGI 104 (254)
T ss_pred cCcCCHHHHHHHHHHHHHc-CCeEEEeec-CChhH-HHHHHHHHHHHHHcCC
Confidence 4578999999988876653 345666777 99999 6889999999998883
No 207
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=30.57 E-value=5e+02 Score=25.00 Aligned_cols=47 Identities=13% Similarity=0.171 Sum_probs=31.3
Q ss_pred CCCHHHHHHHHHHhhhhCCcceEEEEeC-CC-cccCHHHHHHHHHHhhCC
Q 017203 144 NLSSGEIVEQLVHASRLSNIRNVVFMGM-GE-PLNNYAALVEAVRIMTGL 191 (375)
Q Consensus 144 ~lt~~ei~~qi~~~~~~~~i~~Ivf~Gm-GE-Plln~~~l~~~i~~l~~~ 191 (375)
.++.+.+-..+..... .++++|++.|. || ++|..++-.++++.+.+.
T Consensus 25 ~iD~~~l~~lv~~li~-~Gv~Gi~v~GstGE~~~Lt~eEr~~v~~~~~~~ 73 (309)
T cd00952 25 TVDLDETARLVERLIA-AGVDGILTMGTFGECATLTWEEKQAFVATVVET 73 (309)
T ss_pred CcCHHHHHHHHHHHHH-cCCCEEEECcccccchhCCHHHHHHHHHHHHHH
Confidence 5666666666666554 57899988774 77 556666666666666543
No 208
>cd01973 Nitrogenase_VFe_beta_like Nitrogenase_VFe_beta -like: Nitrogenase VFe protein, beta subunit like. This group contains proteins similar to the beta subunits of the VFe protein of the vanadium-dependent (V-) nitrogenase. Nitrogenase catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. In addition to V-nitrogenase there is a molybdenum (Mo)-dependent nitrogenase and an iron only (Fe-) nitrogenase. The Mo-nitrogenase is the most widespread and best characterized of these systems. These systems consist of component 1 (VFe protein, FeFe protein or, MoFe protein respectively) and, component 2 (Fe protein). MoFe is an alpha2beta2 tetramer, V-and Fe- nitrogenases are alpha2beta2delta2 hexamers. The alpha and beta subunits of VFe and FeFe are similar to the alpha and beta subunits of MoFe. For MoFe each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe p
Probab=29.16 E-value=4.5e+02 Score=26.95 Aligned_cols=31 Identities=16% Similarity=0.240 Sum_probs=25.1
Q ss_pred EEeeCCCCCCHHHHHHHHHHHhcCCCEEEEee
Q 017203 269 YIMLDGVNDEEQHAHQLGKLLETFQVVVNLIP 300 (375)
Q Consensus 269 ~vli~gvND~~e~~~~L~~~l~~~~~~vnLip 300 (375)
+-++++.+. ..|+++|.++++.+|..+|.+|
T Consensus 165 VNii~~~~~-~~D~~ei~~lL~~~Gl~v~~~~ 195 (454)
T cd01973 165 LNVFTGWVN-PGDVVELKHYLSEMDVEANILM 195 (454)
T ss_pred EEEECCCCC-hHHHHHHHHHHHHcCCCEEEee
Confidence 345677754 6899999999999999998775
No 209
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=29.13 E-value=2.4e+02 Score=20.80 Aligned_cols=49 Identities=16% Similarity=0.135 Sum_probs=36.5
Q ss_pred HHHHHHHHHhcCCCEEEEeecCCCCCCCCCCCCcHHHHHHHHHHHHhcCCceEE
Q 017203 281 HAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTT 334 (375)
Q Consensus 281 ~~~~L~~~l~~~~~~vnLip~np~~~~~~~~~~s~e~i~~f~~~l~~~~Gi~v~ 334 (375)
-.-+++..+...+..|.++...|.. . +..+++....+.+.++ +.|+.+.
T Consensus 10 ig~E~A~~l~~~g~~vtli~~~~~~-~---~~~~~~~~~~~~~~l~-~~gV~v~ 58 (80)
T PF00070_consen 10 IGIELAEALAELGKEVTLIERSDRL-L---PGFDPDAAKILEEYLR-KRGVEVH 58 (80)
T ss_dssp HHHHHHHHHHHTTSEEEEEESSSSS-S---TTSSHHHHHHHHHHHH-HTTEEEE
T ss_pred HHHHHHHHHHHhCcEEEEEeccchh-h---hhcCHHHHHHHHHHHH-HCCCEEE
Confidence 3556778888899999998877762 2 4556777788888998 6888764
No 210
>KOG3954 consensus Electron transfer flavoprotein, alpha subunit [Energy production and conversion]
Probab=29.00 E-value=33 Score=32.62 Aligned_cols=83 Identities=23% Similarity=0.224 Sum_probs=48.8
Q ss_pred CHHHHHHHHHHhhhhCC--cceEEEEeCCCcccCHHHHHHHHHHhhCC-CCCCCCCeEEEEeCCchhhHHHHhhhC----
Q 017203 146 SSGEIVEQLVHASRLSN--IRNVVFMGMGEPLNNYAALVEAVRIMTGL-PFQVSPKRITVSTVGIVHAINKFHSDL---- 218 (375)
Q Consensus 146 t~~ei~~qi~~~~~~~~--i~~Ivf~GmGEPlln~~~l~~~i~~l~~~-g~~i~~~~itisTnG~~~~i~~l~~~~---- 218 (375)
...|++.|.+.-.+... --.++++| |-+|=.-+++. ++.-+.+. |-.++..+..++ +|+.|...+.-+-+
T Consensus 198 ~~se~v~~~ltkseRPdL~sAkvVVsG-GR~LKs~enFk-ll~~LAdklgaavGAtRaaVD-aGyvpNdlQiGQTGKIVA 274 (336)
T KOG3954|consen 198 SLSEWVSQELTKSERPDLTSAKVVVSG-GRGLKSGENFK-LLYDLADKLGAAVGATRAAVD-AGYVPNDLQIGQTGKIVA 274 (336)
T ss_pred HHHHHHHhhcccccCCccccceEEEEC-CcccCCcccce-ehHHHHHHhchhhchhhhhhc-cCcCCCccccccccceec
Confidence 34566666554333222 24799999 99998766554 55555555 555666777766 78877433333322
Q ss_pred CCceEEEEecCCC
Q 017203 219 PGLNLAVSLHAPV 231 (375)
Q Consensus 219 ~~v~laiSL~a~~ 231 (375)
|...++|.+.++-
T Consensus 275 PeLYiAvGisGAI 287 (336)
T KOG3954|consen 275 PELYIAVGISGAI 287 (336)
T ss_pred cceEEEEeccHHH
Confidence 3445666666554
No 211
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=28.44 E-value=1.1e+02 Score=23.99 Aligned_cols=66 Identities=20% Similarity=0.296 Sum_probs=31.8
Q ss_pred CceEEEEeecCCCCCcCccccCCCC-----C--c-ccCC-CHHHHHHHHHHhhhhCCcceEEEEeCCCcccCHHHHHH
Q 017203 115 PRSTLCISSQVGCKMGCNFCATGTM-----G--F-KSNL-SSGEIVEQLVHASRLSNIRNVVFMGMGEPLNNYAALVE 183 (375)
Q Consensus 115 ~r~tl~vssq~GCnl~C~fC~~~~~-----~--~-~r~l-t~~ei~~qi~~~~~~~~i~~Ivf~GmGEPlln~~~l~~ 183 (375)
.+..++..+...++ .|+||...+. + + ..++ ...++.+.+...... ..--.+|.| |+..--++.+.+
T Consensus 12 ~~Vvvf~kg~~~~~-~Cp~C~~ak~lL~~~~i~~~~~di~~~~~~~~~l~~~tg~-~tvP~vfi~-g~~iGG~ddl~~ 86 (97)
T TIGR00365 12 NPVVLYMKGTPQFP-QCGFSARAVQILKACGVPFAYVNVLEDPEIRQGIKEYSNW-PTIPQLYVK-GEFVGGCDIIME 86 (97)
T ss_pred CCEEEEEccCCCCC-CCchHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHhCC-CCCCEEEEC-CEEEeChHHHHH
Confidence 34666764433444 7999987421 1 1 0111 123344444333221 222456777 776666665554
No 212
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=28.41 E-value=4.3e+02 Score=25.38 Aligned_cols=52 Identities=15% Similarity=0.208 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHhcCCCEEEEeecCCCCCCCCCCCCcHHHHHHHHHHHHhcCCceEEec
Q 017203 279 EQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVR 336 (375)
Q Consensus 279 ~e~~~~L~~~l~~~~~~vnLip~np~~~~~~~~~~s~e~i~~f~~~l~~~~Gi~v~vR 336 (375)
.+++-++++.+++.|++ .+.-..|.+ ++++.++.++.|..+++ ..++++.+=
T Consensus 85 t~eai~lak~a~~~Gad-~il~v~PyY----~k~~~~gl~~hf~~ia~-a~~lPvilY 136 (299)
T COG0329 85 TAEAIELAKHAEKLGAD-GILVVPPYY----NKPSQEGLYAHFKAIAE-AVDLPVILY 136 (299)
T ss_pred HHHHHHHHHHHHhcCCC-EEEEeCCCC----cCCChHHHHHHHHHHHH-hcCCCEEEE
Confidence 57889999999999876 222234431 23444566666667776 456655433
No 213
>PRK05434 phosphoglyceromutase; Provisional
Probab=28.22 E-value=4.4e+02 Score=27.62 Aligned_cols=81 Identities=16% Similarity=0.175 Sum_probs=56.6
Q ss_pred CHHHHHHHHHHHHHhcCCcEEEEEEeeC-CCCCCHHHHHHHHHHHhcCCC-EEEEeecCCCCCCCCCCCC-cHHHHHHHH
Q 017203 246 PLEKLMNALKEYQKNSQQKIFIEYIMLD-GVNDEEQHAHQLGKLLETFQV-VVNLIPFNPIGSVSQFRTS-SDDKVSSFQ 322 (375)
Q Consensus 246 ~~~~vl~~l~~~~~~~g~~v~i~~vli~-gvND~~e~~~~L~~~l~~~~~-~vnLip~np~~~~~~~~~~-s~e~i~~f~ 322 (375)
..+.+.+++ +.+++.+..+.+-=++-+ ||....+++.+|+++++..++ +|.+-.|.. +.+..|. ...-++++.
T Consensus 94 ~n~~~~~~~-~~~~~~~~~lHl~GL~SdggVHsh~~hl~~l~~~a~~~g~~~v~vH~~~D---GRD~~p~s~~~~i~~l~ 169 (507)
T PRK05434 94 ENPALLDAI-DKAKKNGGALHLMGLLSDGGVHSHIDHLFALLELAKEEGVKKVYVHAFLD---GRDTPPKSALGYLEELE 169 (507)
T ss_pred cCHHHHHHH-HHHHhcCCeEEEEEeccCCCcccHHHHHHHHHHHHHHcCCCEEEEEEecC---CCCCCchhHHHHHHHHH
Confidence 345566666 455677888888777777 488889999999999999987 566655553 3343333 346677888
Q ss_pred HHHHhcCCc
Q 017203 323 KILRGSYNI 331 (375)
Q Consensus 323 ~~l~~~~Gi 331 (375)
+.+. +.|.
T Consensus 170 ~~~~-~~~~ 177 (507)
T PRK05434 170 AKLA-ELGV 177 (507)
T ss_pred HHHH-HhCC
Confidence 8887 5554
No 214
>cd03466 Nitrogenase_NifN_2 Nitrogenase_nifN_2: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco). This group also contains the Clostidium fused NifN-NifB protein.
Probab=28.20 E-value=4.8e+02 Score=26.42 Aligned_cols=31 Identities=16% Similarity=0.385 Sum_probs=24.1
Q ss_pred EEeeCCCCCCHHHHHHHHHHHhcCCCEEEEee
Q 017203 269 YIMLDGVNDEEQHAHQLGKLLETFQVVVNLIP 300 (375)
Q Consensus 269 ~vli~gvND~~e~~~~L~~~l~~~~~~vnLip 300 (375)
+-++++.+ ++.|+++|.++++..|..++++|
T Consensus 158 VNlig~~~-~~~D~~ei~~lL~~~Gl~~~~~~ 188 (429)
T cd03466 158 INVIAGMM-SPADIREIKEILREFGIEYILLP 188 (429)
T ss_pred EEEECCCC-ChhHHHHHHHHHHHcCCCeEEec
Confidence 34666664 57899999999999998887654
No 215
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=27.20 E-value=5.3e+02 Score=24.25 Aligned_cols=181 Identities=8% Similarity=0.038 Sum_probs=95.8
Q ss_pred cccCCCHHHHHHHHHHhhhhCCcceEEEEeCCCcccCHHHHHHHHHHhhCCCCCCCCCeEEEEeCCchhhHHHHhhhCCC
Q 017203 141 FKSNLSSGEIVEQLVHASRLSNIRNVVFMGMGEPLNNYAALVEAVRIMTGLPFQVSPKRITVSTVGIVHAINKFHSDLPG 220 (375)
Q Consensus 141 ~~r~lt~~ei~~qi~~~~~~~~i~~Ivf~GmGEPlln~~~l~~~i~~l~~~g~~i~~~~itisTnG~~~~i~~l~~~~~~ 220 (375)
....++.++.++-+....+ .+++.|-+.. |-..+ ...+.++.+.+.+.. ..+..-.......+++..+.+.
T Consensus 15 ~~~~~s~~~k~~i~~~L~~-~Gv~~IEvG~---P~~~~-~~~~~~~~l~~~~~~---~~v~~~~r~~~~di~~a~~~g~- 85 (262)
T cd07948 15 ANAFFDTEDKIEIAKALDA-FGVDYIELTS---PAASP-QSRADCEAIAKLGLK---AKILTHIRCHMDDARIAVETGV- 85 (262)
T ss_pred CCCCCCHHHHHHHHHHHHH-cCCCEEEEEC---CCCCH-HHHHHHHHHHhCCCC---CcEEEEecCCHHHHHHHHHcCc-
Confidence 3456888888877766554 4667666543 77774 466777777654421 2232222333334555555432
Q ss_pred ceEEEEecCCCHHHHhhhcCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEEeeCCCCCCHHHHHHHHHHHhcCCCE-EEEe
Q 017203 221 LNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVV-VNLI 299 (375)
Q Consensus 221 v~laiSL~a~~~~~r~~i~p~~~~~~~~~vl~~l~~~~~~~g~~v~i~~vli~gvND~~e~~~~L~~~l~~~~~~-vnLi 299 (375)
..+.+.+...+...+... ..+....++.+.+.+ ++++..|..|.+... ...-.+++.+.++++.+...++. +.+
T Consensus 86 ~~i~i~~~~S~~~~~~~~-~~~~~e~~~~~~~~i-~~a~~~G~~v~~~~e--da~r~~~~~l~~~~~~~~~~g~~~i~l- 160 (262)
T cd07948 86 DGVDLVFGTSPFLREASH-GKSITEIIESAVEVI-EFVKSKGIEVRFSSE--DSFRSDLVDLLRVYRAVDKLGVNRVGI- 160 (262)
T ss_pred CEEEEEEecCHHHHHHHh-CCCHHHHHHHHHHHH-HHHHHCCCeEEEEEE--eeCCCCHHHHHHHHHHHHHcCCCEEEE-
Confidence 234555433332222222 111112234444444 455566765555443 33334578888899888888765 333
Q ss_pred ecCCCCCCCCCCCCcHHHHHHHHHHHHhcCCce--EEeccCCCcc
Q 017203 300 PFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIR--TTVRKQMGQD 342 (375)
Q Consensus 300 p~np~~~~~~~~~~s~e~i~~f~~~l~~~~Gi~--v~vR~~~g~d 342 (375)
-.+. + ...++++.++.+.+++..++. +...+.+|.-
T Consensus 161 --~Dt~-G----~~~P~~v~~~~~~~~~~~~~~i~~H~Hn~~Gla 198 (262)
T cd07948 161 --ADTV-G----IATPRQVYELVRTLRGVVSCDIEFHGHNDTGCA 198 (262)
T ss_pred --CCcC-C----CCCHHHHHHHHHHHHHhcCCeEEEEECCCCChH
Confidence 3321 1 234567777777776444443 4555666653
No 216
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=26.88 E-value=5.5e+02 Score=24.34 Aligned_cols=47 Identities=11% Similarity=0.022 Sum_probs=28.2
Q ss_pred CCCHHHHHHHHHHhhhhCCcceEEEEe-CCC-cccCHHHHHHHHHHhhCC
Q 017203 144 NLSSGEIVEQLVHASRLSNIRNVVFMG-MGE-PLNNYAALVEAVRIMTGL 191 (375)
Q Consensus 144 ~lt~~ei~~qi~~~~~~~~i~~Ivf~G-mGE-Plln~~~l~~~i~~l~~~ 191 (375)
.++.+.+-..+....+ .++++|++.| .|| +.|..++-.++++...+.
T Consensus 17 ~iD~~~l~~l~~~l~~-~Gv~gi~v~GstGE~~~Ls~eEr~~l~~~~~~~ 65 (289)
T cd00951 17 SFDEDAYRAHVEWLLS-YGAAALFAAGGTGEFFSLTPDEYAQVVRAAVEE 65 (289)
T ss_pred CcCHHHHHHHHHHHHH-cCCCEEEECcCCcCcccCCHHHHHHHHHHHHHH
Confidence 4566665555555443 4678887777 477 555556556666555443
No 217
>cd00316 Oxidoreductase_nitrogenase The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. This group contains both alpha and beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase) and, both subunits of Protochlorophyllide (Pchlide) reductase and chlorophyllide (chlide) reductase. The nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized nitrogenase is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers whose alpha and beta subunits are similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molec
Probab=26.75 E-value=6.1e+02 Score=24.86 Aligned_cols=30 Identities=27% Similarity=0.376 Sum_probs=18.6
Q ss_pred eeCCCCCCHHHHHHHHHHHhcCCCEEEEee
Q 017203 271 MLDGVNDEEQHAHQLGKLLETFQVVVNLIP 300 (375)
Q Consensus 271 li~gvND~~e~~~~L~~~l~~~~~~vnLip 300 (375)
++...+....++.+|.++++.+|..|+.++
T Consensus 157 lig~~~~~~~d~~el~~ll~~~G~~v~~~~ 186 (399)
T cd00316 157 LIGGYNLGGGDLRELKRLLEEMGIRVNALF 186 (399)
T ss_pred EECCCCCchhhHHHHHHHHHHcCCcEEEEc
Confidence 444444443467777777777777766654
No 218
>PRK00507 deoxyribose-phosphate aldolase; Provisional
Probab=26.48 E-value=3e+02 Score=25.34 Aligned_cols=148 Identities=10% Similarity=0.117 Sum_probs=74.7
Q ss_pred cccCCCHHHHHHHHHHhhhhCCcceEEEEeCCCcccCHHHHHHHHHHhhCCCCCCCCCeEEEEe-CCc----hhh-----
Q 017203 141 FKSNLSSGEIVEQLVHASRLSNIRNVVFMGMGEPLNNYAALVEAVRIMTGLPFQVSPKRITVST-VGI----VHA----- 210 (375)
Q Consensus 141 ~~r~lt~~ei~~qi~~~~~~~~i~~Ivf~GmGEPlln~~~l~~~i~~l~~~g~~i~~~~itisT-nG~----~~~----- 210 (375)
+....|.++|...+..+.. .+...|++. |.++..+-+.++..+ +.+.| .|+ .+.
T Consensus 15 L~p~~t~~~i~~~~~~A~~-~~~~avcv~--------p~~v~~a~~~l~~~~-------v~v~tVigFP~G~~~~~~K~~ 78 (221)
T PRK00507 15 LKPEATEEDIDKLCDEAKE-YGFASVCVN--------PSYVKLAAELLKGSD-------VKVCTVIGFPLGANTTAVKAF 78 (221)
T ss_pred CCCCCCHHHHHHHHHHHHH-hCCeEEEEC--------HHHHHHHHHHhCCCC-------CeEEEEecccCCCChHHHHHH
Confidence 3456788888777777665 344555543 344554445554333 33333 233 221
Q ss_pred -HHHHhhhC-CCceEEEEecCCCHHHHhhhcCCCCCCCHHHHHHHHHHHHHhc-C--CcEEEEEEeeCCCCCCHHHHHHH
Q 017203 211 -INKFHSDL-PGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNS-Q--QKIFIEYIMLDGVNDEEQHAHQL 285 (375)
Q Consensus 211 -i~~l~~~~-~~v~laiSL~a~~~~~r~~i~p~~~~~~~~~vl~~l~~~~~~~-g--~~v~i~~vli~gvND~~e~~~~L 285 (375)
.+...+.+ -.+++.+.+-++.. ..++.+.+.++...+.. + .+|.+|...+ +.+++.++
T Consensus 79 e~~~Ai~~GA~EiD~Vin~~~~~~------------g~~~~v~~ei~~v~~~~~~~~lKvIlEt~~L-----~~e~i~~a 141 (221)
T PRK00507 79 EAKDAIANGADEIDMVINIGALKS------------GDWDAVEADIRAVVEAAGGAVLKVIIETCLL-----TDEEKVKA 141 (221)
T ss_pred HHHHHHHcCCceEeeeccHHHhcC------------CCHHHHHHHHHHHHHhcCCceEEEEeecCcC-----CHHHHHHH
Confidence 12222222 12455444433321 12455555554443322 2 3344555444 45778999
Q ss_pred HHHHhcCCCEEEEeecCCCCCCCCCCCCcHHHHHHHHHHHH
Q 017203 286 GKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILR 326 (375)
Q Consensus 286 ~~~l~~~~~~vnLip~np~~~~~~~~~~s~e~i~~f~~~l~ 326 (375)
++.+...++. ++--+... .....+.+.+..+.+.+.
T Consensus 142 ~~~~~~agad--fIKTsTG~---~~~gat~~~v~~m~~~~~ 177 (221)
T PRK00507 142 CEIAKEAGAD--FVKTSTGF---STGGATVEDVKLMRETVG 177 (221)
T ss_pred HHHHHHhCCC--EEEcCCCC---CCCCCCHHHHHHHHHHhC
Confidence 9988887765 33323221 123466778887777664
No 219
>PF06265 DUF1027: Protein of unknown function (DUF1027); InterPro: IPR009370 This entry consists of several hypothetical bacterial proteins of unknown function.; PDB: 2KL5_A.
Probab=26.06 E-value=25 Score=27.43 Aligned_cols=8 Identities=38% Similarity=1.364 Sum_probs=4.2
Q ss_pred CCCCcCcc
Q 017203 126 GCKMGCNF 133 (375)
Q Consensus 126 GCnl~C~f 133 (375)
-||++|+|
T Consensus 75 yCNFGcaY 82 (86)
T PF06265_consen 75 YCNFGCAY 82 (86)
T ss_dssp SS-SS--E
T ss_pred HccCCCce
Confidence 59999987
No 220
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=25.95 E-value=5.5e+02 Score=24.00 Aligned_cols=181 Identities=12% Similarity=0.083 Sum_probs=92.9
Q ss_pred ccCCCHHHHHHHHHHhhhhCCcceEEEEeCCCcccCHHHHHHHHHHhhCCCCCCCCCeEEEEeCCchhhHHHHhhhCC--
Q 017203 142 KSNLSSGEIVEQLVHASRLSNIRNVVFMGMGEPLNNYAALVEAVRIMTGLPFQVSPKRITVSTVGIVHAINKFHSDLP-- 219 (375)
Q Consensus 142 ~r~lt~~ei~~qi~~~~~~~~i~~Ivf~GmGEPlln~~~l~~~i~~l~~~g~~i~~~~itisTnG~~~~i~~l~~~~~-- 219 (375)
...++.++.++-+....+ .+++.|-+.. |-.+++.. +.++.+.+... ...+..-+.+....++...+.+.
T Consensus 14 ~~~~~~~~k~~i~~~L~~-~Gv~~iEvg~---~~~~~~~~-~~~~~l~~~~~---~~~~~~l~r~~~~~v~~a~~~~~~~ 85 (268)
T cd07940 14 GVSLTPEEKLEIARQLDE-LGVDVIEAGF---PAASPGDF-EAVKRIAREVL---NAEICGLARAVKKDIDAAAEALKPA 85 (268)
T ss_pred CCCCCHHHHHHHHHHHHH-cCCCEEEEeC---CCCCHHHH-HHHHHHHHhCC---CCEEEEEccCCHhhHHHHHHhCCCC
Confidence 346788877776666544 4677666633 44454332 55666654321 13444444343444555555431
Q ss_pred Cce-EEEEecCCCHHH-HhhhcCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEEeeCCCCCCHHHHHHHHHHHhcCCCEEE
Q 017203 220 GLN-LAVSLHAPVQDV-RCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVN 297 (375)
Q Consensus 220 ~v~-laiSL~a~~~~~-r~~i~p~~~~~~~~~vl~~l~~~~~~~g~~v~i~~vli~gvND~~e~~~~L~~~l~~~~~~vn 297 (375)
.++ +.+.+ +.++.. +..+ ..+....++.+.+.+ +++++.|..+.+...-... -+++.+.++++.+.+.++.
T Consensus 86 ~~~~i~i~~-~~s~~~~~~~~-~~~~~~~~~~~~~~i-~~a~~~G~~v~~~~~~~~~--~~~~~~~~~~~~~~~~G~~-- 158 (268)
T cd07940 86 KVDRIHTFI-ATSDIHLKYKL-KKTREEVLERAVEAV-EYAKSHGLDVEFSAEDATR--TDLDFLIEVVEAAIEAGAT-- 158 (268)
T ss_pred CCCEEEEEe-cCCHHHHHHHh-CCCHHHHHHHHHHHH-HHHHHcCCeEEEeeecCCC--CCHHHHHHHHHHHHHcCCC--
Confidence 022 34433 233322 2222 111122345555666 4566778777765544333 3577888888888888765
Q ss_pred EeecCCCCCCCCCCCCcHHHHHHHHHHHHhcCC---ce--EEeccCCCcc
Q 017203 298 LIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYN---IR--TTVRKQMGQD 342 (375)
Q Consensus 298 Lip~np~~~~~~~~~~s~e~i~~f~~~l~~~~G---i~--v~vR~~~g~d 342 (375)
-+-+-.+. + ...++++.++.+.+++..+ +. +..-...|.-
T Consensus 159 ~i~l~DT~-G----~~~P~~v~~lv~~l~~~~~~~~i~l~~H~Hn~~GlA 203 (268)
T cd07940 159 TINIPDTV-G----YLTPEEFGELIKKLKENVPNIKVPISVHCHNDLGLA 203 (268)
T ss_pred EEEECCCC-C----CCCHHHHHHHHHHHHHhCCCCceeEEEEecCCcchH
Confidence 22223331 2 2345667777777664444 33 4555666654
No 221
>TIGR00250 RNAse_H_YqgF RNAse H-fold protein YqgF. This protein family, which exhibits an RNAse H fold in crystal structure, has been proposed as a putative Holliday junction resolvase, an alternate to RuvC.
Probab=25.76 E-value=2.6e+02 Score=23.38 Aligned_cols=60 Identities=12% Similarity=0.223 Sum_probs=33.4
Q ss_pred HHHHHHHHHHhcCCCEEEE--eecCCCCCCCCCCCCcHHHHHHHHHHHHhcCCceEEeccCCCcch
Q 017203 280 QHAHQLGKLLETFQVVVNL--IPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDI 343 (375)
Q Consensus 280 e~~~~L~~~l~~~~~~vnL--ip~np~~~~~~~~~~s~e~i~~f~~~l~~~~Gi~v~vR~~~g~di 343 (375)
..+..|.++++..++.--+ +|++.. +...+....+.+|.+.|+..++++|..-.++....
T Consensus 35 ~~~~~l~~~i~~~~~~~iVvGlP~~~d----G~~~~~a~~v~~f~~~L~~~~~~~v~~~DEr~TT~ 96 (130)
T TIGR00250 35 PDWSRIEELLKEWTPDKIVVGLPLNMD----GTEGPLTERAQKFANRLEGRFGVPVVLWDERLSTV 96 (130)
T ss_pred HHHHHHHHHHHHcCCCEEEEeccCCCC----cCcCHHHHHHHHHHHHHHHHhCCCEEEEcCCcCHH
Confidence 4456666666666543222 244433 22345566777777777644566666666555443
No 222
>TIGR01307 pgm_bpd_ind 2,3-bisphosphoglycerate-independent phosphoglycerate mutase. This protein is about double in length of, and devoid of homology to the form of phosphoglycerate mutase that uses 2,3-bisphosphoglycerate as a cofactor.
Probab=25.46 E-value=5.6e+02 Score=26.82 Aligned_cols=80 Identities=20% Similarity=0.255 Sum_probs=56.0
Q ss_pred CHHHHHHHHHHHHHhcCCcEEEEEEeeCC-CCCCHHHHHHHHHHHhcCCC-EEEEeecCCCCCCCCCCCCc-HHHHHHHH
Q 017203 246 PLEKLMNALKEYQKNSQQKIFIEYIMLDG-VNDEEQHAHQLGKLLETFQV-VVNLIPFNPIGSVSQFRTSS-DDKVSSFQ 322 (375)
Q Consensus 246 ~~~~vl~~l~~~~~~~g~~v~i~~vli~g-vND~~e~~~~L~~~l~~~~~-~vnLip~np~~~~~~~~~~s-~e~i~~f~ 322 (375)
..+.+.+++ ..+++.+..+.+-=++-+| |....+++.+|+++++..++ +|.+-.|-. +.+.+|.| .+-++++.
T Consensus 90 ~n~~l~~~~-~~~~~~~~~lHl~GL~SdGgVHsh~~hl~~l~~~a~~~g~~~v~vH~~~D---GRD~~p~s~~~~~~~l~ 165 (501)
T TIGR01307 90 ANPALLGAI-DRAKDNNGKLHLMGLVSDGGVHSHIDHLIALIELAAERGIEKVVLHAFTD---GRDTAPKSAESYLEQLQ 165 (501)
T ss_pred cCHHHHHHH-HHHHhcCCceEEEEeccCCCCcchHHHHHHHHHHHHHcCCCeEEEEEecC---CCCCCchhHHHHHHHHH
Confidence 445666677 4556778888887777774 88899999999999999987 466655553 33444333 45667777
Q ss_pred HHHHhcCC
Q 017203 323 KILRGSYN 330 (375)
Q Consensus 323 ~~l~~~~G 330 (375)
+.+. +.|
T Consensus 166 ~~~~-~~~ 172 (501)
T TIGR01307 166 AFLK-EIG 172 (501)
T ss_pred HHHH-HhC
Confidence 7776 444
No 223
>PF07499 RuvA_C: RuvA, C-terminal domain; InterPro: IPR011114 In prokaryotes, RuvA, RuvB, and RuvC process the universal DNA intermediate of homologous recombination, termed Holliday junction. The tetrameric DNA helicase RuvA specifically binds to the Holliday junction and facilitates the isomerization of the junction from the stacked folded configuration to the square-planar structure []. In the RuvA tetramer, each subunit consists of three domains, I, II and III, where I and II form the major core that is responsible for Holliday junction binding and base pair rearrangements of Holliday junction executed at the crossover point, whereas domain III regulates branch migration through direct contact with RuvB. The domain represents the C-terminal domain III of RuvA. This domain plays a significant role in the ATP-dependent branch migration of the hetero-duplex through direct contact with RuvB []. Within the Holliday junction, this domain makes no interaction with the DNA.; GO: 0005524 ATP binding, 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination, 0009379 Holliday junction helicase complex; PDB: 1HJP_A 1CUK_A 1C7Y_A 1IXS_A 1IXR_B 1BVS_E 2ZTC_A 2ZTD_B 2H5X_A.
Probab=25.46 E-value=63 Score=21.93 Aligned_cols=28 Identities=7% Similarity=-0.122 Sum_probs=23.7
Q ss_pred HHHHHHHHHHcCCCcchHHHHHHHHHhC
Q 017203 11 GGIIRAEFEKAGIKQHFIPLIWKYVIEN 38 (375)
Q Consensus 11 ~~~l~~~~~~~g~~~~~~~qi~~~~~~~ 38 (375)
.+|..+.|.++|+++-.+.++.+-+...
T Consensus 3 ~~d~~~AL~~LGy~~~e~~~av~~~~~~ 30 (47)
T PF07499_consen 3 LEDALEALISLGYSKAEAQKAVSKLLEK 30 (47)
T ss_dssp HHHHHHHHHHTTS-HHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhhcC
Confidence 4678889999999999999999999873
No 224
>TIGR01861 ANFD nitrogenase iron-iron protein, alpha chain. This model represents the all-iron variant of the nitrogenase component I alpha chain. Molybdenum-iron and vanadium iron forms are also found. The complete complex contains two alpha chains, two beta chains and two delta chains. The component I associates with component II also known as the iron protein which serves to provide electrons for component I.
Probab=25.23 E-value=8e+02 Score=25.67 Aligned_cols=70 Identities=10% Similarity=0.033 Sum_probs=41.6
Q ss_pred eeCCCCCCHHHHHHHHHHHhcCCCEEEEeecCCCC-------CCCCCC-CCcHHHHHHHHHHHHhcCCceEEeccCCCc
Q 017203 271 MLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIG-------SVSQFR-TSSDDKVSSFQKILRGSYNIRTTVRKQMGQ 341 (375)
Q Consensus 271 li~gvND~~e~~~~L~~~l~~~~~~vnLip~np~~-------~~~~~~-~~s~e~i~~f~~~l~~~~Gi~v~vR~~~g~ 341 (375)
+++++| ...|++++-+++..+|..++........ ...... .........+.+.|++++|++...-...|.
T Consensus 207 liG~~n-~~gD~~eik~lLe~~Gl~v~~~~~gg~t~~ei~~~~~A~lniv~~~~~~~~~A~~Leer~GiP~~~~~~~Gi 284 (513)
T TIGR01861 207 YVGEYN-IQGDQEVMVDYFQRMGIQVLSTFTGNGSYDDLRGMHRAHLNVLECARSAEYICNELRKRYGIPRLDIDGFGF 284 (513)
T ss_pred EeCCCC-CccCHHHHHHHHHHCCCeEEEEeCCCCCHHHHHhhccCCEEEEECHHHHHHHHHHHHHHhCCCeEecCcCCH
Confidence 667776 4678999999999999988743321110 000110 112344567788888789987543334453
No 225
>COG4822 CbiK Cobalamin biosynthesis protein CbiK, Co2+ chelatase [Coenzyme metabolism]
Probab=25.21 E-value=5.6e+02 Score=23.85 Aligned_cols=80 Identities=16% Similarity=0.249 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHhcCC-cEEEEEEeeCCCCCCHHHHHHHHHHHhcCCCE-EEEeecCCCCCCCCC-CCCcHHHHHHHHHHH
Q 017203 249 KLMNALKEYQKNSQQ-KIFIEYIMLDGVNDEEQHAHQLGKLLETFQVV-VNLIPFNPIGSVSQF-RTSSDDKVSSFQKIL 325 (375)
Q Consensus 249 ~vl~~l~~~~~~~g~-~v~i~~vli~gvND~~e~~~~L~~~l~~~~~~-vnLip~np~~~~~~~-~~~s~e~i~~f~~~l 325 (375)
.....+...+.+.|. .+.+- -+.| .-.++.+++.++..+++ |.|+|+.-.. +..- ...-.+.-+.++.+|
T Consensus 153 ~~YacLd~~~~~~~f~~v~v~--~ve~----yP~~d~vi~~l~~~~~~~v~L~PlMlvA-G~Ha~nDMasddedswk~il 225 (265)
T COG4822 153 AAYACLDHVLDEYGFDNVFVA--AVEG----YPLVDTVIEYLRKNGIKEVHLIPLMLVA-GDHAKNDMASDDEDSWKNIL 225 (265)
T ss_pred HHHHHHHHHHHhcCCCceEEE--EecC----CCcHHHHHHHHHHcCCceEEEeeeEEee-chhhhhhhcccchHHHHHHH
Confidence 334445555555554 34332 3343 34578889999988874 9999997652 2111 000112225778899
Q ss_pred HhcCCceEEec
Q 017203 326 RGSYNIRTTVR 336 (375)
Q Consensus 326 ~~~~Gi~v~vR 336 (375)
+ +.|+.|++-
T Consensus 226 ~-~~G~~v~~~ 235 (265)
T COG4822 226 E-KNGFKVEVY 235 (265)
T ss_pred H-hCCceeEEE
Confidence 8 799988543
No 226
>COG1327 Predicted transcriptional regulator, consists of a Zn-ribbon and ATP-cone domains [Transcription]
Probab=25.13 E-value=28 Score=30.12 Aligned_cols=11 Identities=36% Similarity=0.942 Sum_probs=9.1
Q ss_pred CcCccccCCCC
Q 017203 129 MGCNFCATGTM 139 (375)
Q Consensus 129 l~C~fC~~~~~ 139 (375)
|+|+||.....
T Consensus 1 M~CPfC~~~~t 11 (156)
T COG1327 1 MKCPFCGHEDT 11 (156)
T ss_pred CCCCCCCCCCC
Confidence 78999988654
No 227
>TIGR03278 methan_mark_10 putative methanogenesis marker protein 10. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The presence of motifs with seven invariant Cys residues in the N-terminal 50 residues, including three instances of CXXC, would be consistent with function as an oxidoreductase with FeS clusters. The exact function is unknown, but likely is linked to methanogenesis. In most genomes, the member of this family is encoded by a gene next to, and divergently transcribed from, the methyl coenzyme M reductase operon.
Probab=24.98 E-value=4.1e+02 Score=26.91 Aligned_cols=131 Identities=16% Similarity=0.101 Sum_probs=71.1
Q ss_pred CCCHHHHHHHHHHhhhhCC----cceEEEEeCCCcccCHHHHHHHHHHhhCCCCCCCCCeEEEEeCCc-hhhHHHHhhhC
Q 017203 144 NLSSGEIVEQLVHASRLSN----IRNVVFMGMGEPLNNYAALVEAVRIMTGLPFQVSPKRITVSTVGI-VHAINKFHSDL 218 (375)
Q Consensus 144 ~lt~~ei~~qi~~~~~~~~----i~~Ivf~GmGEPlln~~~l~~~i~~l~~~g~~i~~~~itisTnG~-~~~i~~l~~~~ 218 (375)
..+.+++.+++....+... .+.+++..-|.|++-.++..++++.+.. ..+++++-|--+ .|.++++++..
T Consensus 226 ~~~~~e~~~~v~~~~~~~~i~~~g~~~~~~~ag~~~~~~~e~~~~~~~l~~-----~~~~~~ivtG~~a~~~~~~~~~~l 300 (404)
T TIGR03278 226 PHTVSEFKNIVRETHKEFPIRVTGTPLCDPETGAPFALAKEPNEYLEILPP-----VEKEATIITGRVAAPFIREIFRAL 300 (404)
T ss_pred CCCHHHHHHHHHHHHHHhCCcccCCcccccCCCCCeeHHHHHHHHHhhCCC-----CCceEEEEEEEecHHHHHHHHHHH
Confidence 5678888887665433222 1344444458898765666666666543 237788887544 36778888765
Q ss_pred CCceEEEEecCCCHHHHhhhcCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEEeeCC--CCCCHHHHHHHHHHHhcCCCEE
Q 017203 219 PGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDG--VNDEEQHAHQLGKLLETFQVVV 296 (375)
Q Consensus 219 ~~v~laiSL~a~~~~~r~~i~p~~~~~~~~~vl~~l~~~~~~~g~~v~i~~vli~g--vND~~e~~~~L~~~l~~~~~~v 296 (375)
... +.|.+.+..++ + +.-.+-.+++ .++ .+..| .++++|+ +-|+ -.++++. +.+++.+
T Consensus 301 ~~~-~~v~v~~v~n~----V---agLlTg~Di~-~l~--~~~~~-----d~~liP~~~fldd-~t~~~~~---~~l~~~v 360 (404)
T TIGR03278 301 GGG-DLVNVVPVKKD----I---ACLITEDDLE-ELD--LSEVK-----ETVIIPGRAFVHD-MVAEEIL---KRDGVDR 360 (404)
T ss_pred hcC-ceEEEEEecCc----c---cccchHHHHH-Hhc--CCCCC-----CEEEecCcccccc-ccHHHHH---HHhCCcE
Confidence 433 44554444333 2 2223556666 653 12222 5677776 1222 2344444 4556655
Q ss_pred EEe
Q 017203 297 NLI 299 (375)
Q Consensus 297 nLi 299 (375)
.+.
T Consensus 361 ~v~ 363 (404)
T TIGR03278 361 IVV 363 (404)
T ss_pred EEe
Confidence 444
No 228
>COG3904 Predicted periplasmic protein [Function unknown]
Probab=24.51 E-value=2.9e+02 Score=25.55 Aligned_cols=71 Identities=21% Similarity=0.240 Sum_probs=47.7
Q ss_pred CceEEEEeecCCCCCcCc--cccCCCCCcccCCCHHHHHHHHHHhhhhCCcceEEEEeCCCcccCHHHHHHHHHHhhCCC
Q 017203 115 PRSTLCISSQVGCKMGCN--FCATGTMGFKSNLSSGEIVEQLVHASRLSNIRNVVFMGMGEPLNNYAALVEAVRIMTGLP 192 (375)
Q Consensus 115 ~r~tl~vssq~GCnl~C~--fC~~~~~~~~r~lt~~ei~~qi~~~~~~~~i~~Ivf~GmGEPlln~~~l~~~i~~l~~~g 192 (375)
-++.++-+--.+|...|+ +|.++... .=|+.|+..+..... .+.-.|++++ |+.+-+....+-+.+++.|
T Consensus 31 ~~fa~mr~~rp~~~pac~ea~~atPaia---aG~~~el~r~~~~~d--gr~l~VvVse---~~a~~da~sal~~lir~~G 102 (245)
T COG3904 31 MRFAVMRSNRPGCEPACPEAISATPAIA---AGTPAELKRTLKTLD--GRQLPVVVSE---PGANVDAASALGRLIRKAG 102 (245)
T ss_pred cccceeeccCCCccchhHHHhcCCCccc---CCCHHHHHHhhhhcc--CceeeEEEcC---CCCCccHHHHHHHHHhccC
Confidence 568888888899999997 68777543 335677766655432 3556777766 7777666666666666666
Q ss_pred C
Q 017203 193 F 193 (375)
Q Consensus 193 ~ 193 (375)
.
T Consensus 103 ~ 103 (245)
T COG3904 103 L 103 (245)
T ss_pred c
Confidence 3
No 229
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=24.34 E-value=6e+02 Score=23.91 Aligned_cols=49 Identities=10% Similarity=0.131 Sum_probs=32.1
Q ss_pred cCCCHHHHHHHHHHhhhhCCcceEEEEeCCCcccCHHHHHHHHHHhhCCC
Q 017203 143 SNLSSGEIVEQLVHASRLSNIRNVVFMGMGEPLNNYAALVEAVRIMTGLP 192 (375)
Q Consensus 143 r~lt~~ei~~qi~~~~~~~~i~~Ivf~GmGEPlln~~~l~~~i~~l~~~g 192 (375)
...+.+++++.+...+....-..+++|+.-.|++++ .+.++++.+++.|
T Consensus 69 ~G~~~~~~~~~~~~~r~~~~~~p~vlm~Y~N~i~~~-G~e~f~~~~~~aG 117 (258)
T PRK13111 69 AGVTLADVFELVREIREKDPTIPIVLMTYYNPIFQY-GVERFAADAAEAG 117 (258)
T ss_pred cCCCHHHHHHHHHHHHhcCCCCCEEEEecccHHhhc-CHHHHHHHHHHcC
Confidence 446777888888776632111246688888888775 4666777776655
No 230
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=24.27 E-value=1.6e+02 Score=24.74 Aligned_cols=63 Identities=13% Similarity=0.077 Sum_probs=39.8
Q ss_pred HHHHHHHHhcCCCE---E-----EEeecCCCCCCCCCCCCcHHHHHHHHHHHHhcCCceEEeccCCCcchhc
Q 017203 282 AHQLGKLLETFQVV---V-----NLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISG 345 (375)
Q Consensus 282 ~~~L~~~l~~~~~~---v-----nLip~np~~~~~~~~~~s~e~i~~f~~~l~~~~Gi~v~vR~~~g~di~a 345 (375)
.+++++.++..++. + .-..|.|+..+...+....+-+.++.+.+. +.|+.|.+|.+.+-|-.+
T Consensus 2 ~~~~~~~lk~~~v~si~i~a~~h~g~ayYPt~~~~~hp~L~~Dllge~v~a~h-~~Girv~ay~~~~~d~~~ 72 (132)
T PF14871_consen 2 PEQFVDTLKEAHVNSITIFAKCHGGYAYYPTKVGPRHPGLKRDLLGEQVEACH-ERGIRVPAYFDFSWDEDA 72 (132)
T ss_pred HHHHHHHHHHhCCCEEEEEcccccEEEEccCCCCcCCCCCCcCHHHHHHHHHH-HCCCEEEEEEeeecChHH
Confidence 45666777766543 2 234567764322233334567788888888 799999999877655543
No 231
>COG4015 Predicted dinucleotide-utilizing enzyme of the ThiF/HesA family [General function prediction only]
Probab=24.13 E-value=89 Score=27.68 Aligned_cols=37 Identities=16% Similarity=0.284 Sum_probs=28.2
Q ss_pred CcceEEEEeCCCcccCHHHHHHHHHHhhCCCCCCCCCeEEEEeCCch
Q 017203 162 NIRNVVFMGMGEPLNNYAALVEAVRIMTGLPFQVSPKRITVSTVGIV 208 (375)
Q Consensus 162 ~i~~Ivf~GmGEPlln~~~l~~~i~~l~~~g~~i~~~~itisTnG~~ 208 (375)
.+-.|.+.| |.-+- -..++++++++.| ..||||||..
T Consensus 108 DVvvi~IAG-GdT~P---vTaaii~ya~~rG------~~TisT~GVF 144 (217)
T COG4015 108 DVVVICIAG-GDTIP---VTAAIINYAKERG------IKTISTNGVF 144 (217)
T ss_pred CEEEEEecC-CCcch---hHHHHHHHHHHcC------ceEeecCcee
Confidence 355788889 87664 4567788898887 3899999975
No 232
>PLN02417 dihydrodipicolinate synthase
Probab=24.11 E-value=6.1e+02 Score=23.92 Aligned_cols=126 Identities=10% Similarity=0.046 Sum_probs=63.3
Q ss_pred CCCHHHHHHHHHHhhhhCCcceEEEEeC-CC-cccCHHHHHHHHHHhhCC-CCCCCCCeEEEEe--CCchhhH--HHHhh
Q 017203 144 NLSSGEIVEQLVHASRLSNIRNVVFMGM-GE-PLNNYAALVEAVRIMTGL-PFQVSPKRITVST--VGIVHAI--NKFHS 216 (375)
Q Consensus 144 ~lt~~ei~~qi~~~~~~~~i~~Ivf~Gm-GE-Plln~~~l~~~i~~l~~~-g~~i~~~~itisT--nG~~~~i--~~l~~ 216 (375)
.++.+.+.+.+..... .++++|++.|. || ++|..++-.++++...+. + +...+...+ +.+...+ .+.++
T Consensus 18 ~iD~~~~~~~i~~l~~-~Gv~Gi~~~GstGE~~~ls~~Er~~~~~~~~~~~~---~~~pvi~gv~~~~t~~~i~~a~~a~ 93 (280)
T PLN02417 18 RFDLEAYDSLVNMQIE-NGAEGLIVGGTTGEGQLMSWDEHIMLIGHTVNCFG---GKIKVIGNTGSNSTREAIHATEQGF 93 (280)
T ss_pred CcCHHHHHHHHHHHHH-cCCCEEEECccCcchhhCCHHHHHHHHHHHHHHhC---CCCcEEEECCCccHHHHHHHHHHHH
Confidence 4666666666665544 47899988885 77 566666666666665443 2 112233333 3333322 23333
Q ss_pred hCCCceEEEEecCCCHHHHhhhcCCCCCCCHHHHHHHHHHHHHhcCCcE-EEEEEeeCCCCCCHHHHHHHHH
Q 017203 217 DLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKI-FIEYIMLDGVNDEEQHAHQLGK 287 (375)
Q Consensus 217 ~~~~v~laiSL~a~~~~~r~~i~p~~~~~~~~~vl~~l~~~~~~~g~~v-~i~~vli~gvND~~e~~~~L~~ 287 (375)
... .+-. .+-.|. + .+.+-+.+++-.+...... ++ ..+++-.-|++-+++.+.+|++
T Consensus 94 ~~G-adav-~~~~P~---y-------~~~~~~~i~~~f~~va~~~--pi~lYn~P~~tg~~l~~~~l~~l~~ 151 (280)
T PLN02417 94 AVG-MHAA-LHINPY---Y-------GKTSQEGLIKHFETVLDMG--PTIIYNVPGRTGQDIPPEVIFKIAQ 151 (280)
T ss_pred HcC-CCEE-EEcCCc---c-------CCCCHHHHHHHHHHHHhhC--CEEEEEChhHhCcCCCHHHHHHHhc
Confidence 332 3322 221221 0 0123455666555544433 43 3444444466667766666653
No 233
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=24.07 E-value=6.1e+02 Score=23.89 Aligned_cols=47 Identities=13% Similarity=0.243 Sum_probs=28.8
Q ss_pred CCCHHHHHHHHHHhhhhCCcceEEEEeC-CC-cccCHHHHHHHHHHhhCC
Q 017203 144 NLSSGEIVEQLVHASRLSNIRNVVFMGM-GE-PLNNYAALVEAVRIMTGL 191 (375)
Q Consensus 144 ~lt~~ei~~qi~~~~~~~~i~~Ivf~Gm-GE-Plln~~~l~~~i~~l~~~ 191 (375)
.++.+.+...+..... .++++|++.|. || +.|..++-.++++...+.
T Consensus 15 ~iD~~~~~~~i~~l~~-~Gv~Gi~~~GstGE~~~Ls~~Er~~~~~~~~~~ 63 (285)
T TIGR00674 15 SVDFAALEKLIDFQIE-NGTDAIVVVGTTGESPTLSHEEHKKVIEFVVDL 63 (285)
T ss_pred CcCHHHHHHHHHHHHH-cCCCEEEECccCcccccCCHHHHHHHHHHHHHH
Confidence 4566666666665443 47888888764 77 556666655666555443
No 234
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=23.90 E-value=4.6e+02 Score=24.53 Aligned_cols=83 Identities=20% Similarity=0.344 Sum_probs=51.0
Q ss_pred CCCHHHHHHHHHH----hhhhCCcceEEEEeCCCcccCHHHHHHHHHHhhCCCCCCCCCeEEE-EeCCch-h-hH----H
Q 017203 144 NLSSGEIVEQLVH----ASRLSNIRNVVFMGMGEPLNNYAALVEAVRIMTGLPFQVSPKRITV-STVGIV-H-AI----N 212 (375)
Q Consensus 144 ~lt~~ei~~qi~~----~~~~~~i~~Ivf~GmGEPlln~~~l~~~i~~l~~~g~~i~~~~iti-sTnG~~-~-~i----~ 212 (375)
+.+.++.++.+.. ++. .+ -.|.|..+-.+-..++.+.++++.+.+.|. ..|++ +|.|.. | .+ .
T Consensus 106 ~~~~~~~~~~~~~~i~~a~~-~G-~~v~~~~~~~~~~~~~~~~~~~~~~~~~G~----~~i~l~DT~G~~~P~~v~~lv~ 179 (268)
T cd07940 106 KKTREEVLERAVEAVEYAKS-HG-LDVEFSAEDATRTDLDFLIEVVEAAIEAGA----TTINIPDTVGYLTPEEFGELIK 179 (268)
T ss_pred CCCHHHHHHHHHHHHHHHHH-cC-CeEEEeeecCCCCCHHHHHHHHHHHHHcCC----CEEEECCCCCCCCHHHHHHHHH
Confidence 3556666655544 232 22 356777766677778899999999987663 34554 799974 3 33 3
Q ss_pred HHhhhCCCceEEEEecCCCH
Q 017203 213 KFHSDLPGLNLAVSLHAPVQ 232 (375)
Q Consensus 213 ~l~~~~~~v~laiSL~a~~~ 232 (375)
.+.+..+..++.|++|..++
T Consensus 180 ~l~~~~~~~~i~l~~H~Hn~ 199 (268)
T cd07940 180 KLKENVPNIKVPISVHCHND 199 (268)
T ss_pred HHHHhCCCCceeEEEEecCC
Confidence 44444432237788888763
No 235
>PRK00109 Holliday junction resolvase-like protein; Reviewed
Probab=23.52 E-value=2.9e+02 Score=23.37 Aligned_cols=28 Identities=11% Similarity=0.298 Sum_probs=12.8
Q ss_pred CcHHHHHHHHHHHHhcCCceEEeccCCC
Q 017203 313 SSDDKVSSFQKILRGSYNIRTTVRKQMG 340 (375)
Q Consensus 313 ~s~e~i~~f~~~l~~~~Gi~v~vR~~~g 340 (375)
+....+.+|.+.|+..+++++..-.++.
T Consensus 72 ~~~~~v~~f~~~L~~~~~~~v~~~DEr~ 99 (138)
T PRK00109 72 PRTERARKFANRLEGRFGLPVVLVDERL 99 (138)
T ss_pred HHHHHHHHHHHHHHHHhCCCEEEEcCCc
Confidence 3345555555555433344444443333
No 236
>TIGR00244 transcriptional regulator NrdR. Members of this almost entirely bacterial family contain an ATP cone domain (PFAM:PF03477). There is never more than one member per genome. Common gene symbols given include nrdR, ybaD, ribX and ytcG. The member from Streptomyces coelicolor is found upstream in the operon of the class II oxygen-independent ribonucleotide reductase gene nrdJ and was shown to repress nrdJ expression. Many members of this family are found near genes for riboflavin biosynthesis in Gram-negative bacteria, suggesting a role in that pathway. However, a phylogenetic profiling study associates members of this family with the presence of a palindromic signal with consensus acaCwAtATaTwGtgt, termed the NrdR-box, an upstream element for most operons for ribonucleotide reductase of all three classes in bacterial genomes.
Probab=23.46 E-value=41 Score=29.07 Aligned_cols=11 Identities=36% Similarity=0.908 Sum_probs=8.9
Q ss_pred CcCccccCCCC
Q 017203 129 MGCNFCATGTM 139 (375)
Q Consensus 129 l~C~fC~~~~~ 139 (375)
|+|+||.+...
T Consensus 1 M~CP~C~~~dt 11 (147)
T TIGR00244 1 MHCPFCQHHNT 11 (147)
T ss_pred CCCCCCCCCCC
Confidence 79999998643
No 237
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=23.16 E-value=31 Score=25.16 Aligned_cols=20 Identities=25% Similarity=0.348 Sum_probs=13.0
Q ss_pred eEEEEeCCCcccCHHHHHHHH
Q 017203 165 NVVFMGMGEPLNNYAALVEAV 185 (375)
Q Consensus 165 ~Ivf~GmGEPlln~~~l~~~i 185 (375)
-++|.| |+.+--.+.+.+++
T Consensus 52 P~ifi~-g~~igg~~~l~~~l 71 (72)
T cd03029 52 PQVFID-GELIGGSDDLEKYF 71 (72)
T ss_pred CeEEEC-CEEEeCHHHHHHHh
Confidence 345777 77776666666654
No 238
>COG3589 Uncharacterized conserved protein [Function unknown]
Probab=22.98 E-value=7.5e+02 Score=24.54 Aligned_cols=145 Identities=15% Similarity=0.163 Sum_probs=75.0
Q ss_pred HHHHHHHHhhhhCCcceEEEEeCCCcccC----HHHHHHHHHHhhCCCCCCCCCeEEEEeCCch--------hhHHHHhh
Q 017203 149 EIVEQLVHASRLSNIRNVVFMGMGEPLNN----YAALVEAVRIMTGLPFQVSPKRITVSTVGIV--------HAINKFHS 216 (375)
Q Consensus 149 ei~~qi~~~~~~~~i~~Ivf~GmGEPlln----~~~l~~~i~~l~~~g~~i~~~~itisTnG~~--------~~i~~l~~ 216 (375)
+...-+..+... + -.-+||+++.|--+ +..+.+++++++..| .++-++-|... +.+..+.+
T Consensus 17 ~~~~Yi~~~~~~-G-f~~IFtsl~~~~~~~~~~~~~~~ell~~Anklg-----~~vivDvnPsil~~l~~S~~~l~~f~e 89 (360)
T COG3589 17 KDIAYIDRMHKY-G-FKRIFTSLLIPEEDAELYFHRFKELLKEANKLG-----LRVIVDVNPSILKELNISLDNLSRFQE 89 (360)
T ss_pred hHHHHHHHHHHc-C-ccceeeecccCCchHHHHHHHHHHHHHHHHhcC-----cEEEEEcCHHHHhhcCCChHHHHHHHH
Confidence 334444444432 2 35679999888876 345778888888777 46777777642 11222222
Q ss_pred hCCCceEEEEecCCCHHHHhhhcCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEEeeCCCCCCHHHHHHHHHHHhcCCCEE
Q 017203 217 DLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVV 296 (375)
Q Consensus 217 ~~~~v~laiSL~a~~~~~r~~i~p~~~~~~~~~vl~~l~~~~~~~g~~v~i~~vli~gvND~~e~~~~L~~~l~~~~~~v 296 (375)
.+ ...|.++. +.+.+++.+.. +.+ ++++.-+. +.+. .+..|...-..+ =
T Consensus 90 ~G-~~glRlD~----------------gfS~eei~~ms-----~~~--lkieLN~S---~it~-~l~~l~~~~an~---~ 138 (360)
T COG3589 90 LG-VDGLRLDY----------------GFSGEEIAEMS-----KNP--LKIELNAS---TITE-LLDSLLAYKANL---E 138 (360)
T ss_pred hh-hhheeecc----------------cCCHHHHHHHh-----cCC--eEEEEchh---hhHH-HHHHHHHhccch---h
Confidence 21 12233332 12333322221 222 34433221 2232 444444443332 2
Q ss_pred EEeecCCCCCCCCCCCCcHHHHHHHHHHHHhcCCceE
Q 017203 297 NLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRT 333 (375)
Q Consensus 297 nLip~np~~~~~~~~~~s~e~i~~f~~~l~~~~Gi~v 333 (375)
||+.++..+ ..+|..-|.+.+.+--++++ .+++.+
T Consensus 139 nl~~cHNyY-Pr~yTGLS~e~f~~kn~~fk-~~~i~t 173 (360)
T COG3589 139 NLEGCHNYY-PRPYTGLSREHFKRKNEIFK-EYNIKT 173 (360)
T ss_pred hhhhccccc-CCcccCccHHHHHHHHHHHH-hcCCce
Confidence 455555443 24567778888888888888 688875
No 239
>cd06831 PLPDE_III_ODC_like_AZI Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Ornithine Decarboxylase-like Antizyme Inhibitor. Antizyme inhibitor (AZI) is homologous to the fold type III PLP-dependent enzyme ODC but does not retain any decarboxylase activity. Like ODC, AZI is presumed to exist as a homodimer. Antizyme is a regulatory protein that binds directly to the ODC monomer to block its active site, leading to its degradation by the 26S proteasome. AZI binds to Antizyme with a higher affinity than ODC, preventing the formation of the Antizyme-ODC complex. Thus, AZI blocks the ability of Antizyme to promote ODC degradation, which leads to increased ODC enzymatic activity and polyamine levels. AZI also prevents the degradation of other proteins regulated by Antizyme, such as cyclin D1.
Probab=22.94 E-value=7.7e+02 Score=24.64 Aligned_cols=175 Identities=14% Similarity=0.170 Sum_probs=82.9
Q ss_pred CcceEEEEeCCCcccCHHHHHHHHHHhhCCCCCCCCCeEEEEeCCchhhHHHHhhhCCCceEEEEecCCCHHHHhhhcCC
Q 017203 162 NIRNVVFMGMGEPLNNYAALVEAVRIMTGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPA 241 (375)
Q Consensus 162 ~i~~Ivf~GmGEPlln~~~l~~~i~~l~~~g~~i~~~~itisTnG~~~~i~~l~~~~~~v~laiSL~a~~~~~r~~i~p~ 241 (375)
..+.|+|+| |--..+.+..+ .+.|+ ..+++++ ...++++.+..+...+.+-+...+ .....-+..
T Consensus 79 ~~~~Iif~g---p~K~~~~l~~a----~~~Gv----~~i~vDS---~~El~~i~~~~~~~~v~lRi~~~~-~~~~~~~~~ 143 (394)
T cd06831 79 SPENIIYTN---PCKQASQIKYA----AKVGV----NIMTCDN---EIELKKIARNHPNAKLLLHIATED-NIGGEEMNM 143 (394)
T ss_pred CcCCEEEeC---CCCCHHHHHHH----HHCCC----CEEEECC---HHHHHHHHHhCCCCcEEEEEeccC-CCCCCccCC
Confidence 346899999 55444444443 33452 2355554 334555555444444443332211 100000000
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCcE-EEEEEeeCCCCCCH------HHHHHHHHHHhcCCCEEEEeecCCCCCCCCCCCCc
Q 017203 242 ARAFPLEKLMNALKEYQKNSQQKI-FIEYIMLDGVNDEE------QHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSS 314 (375)
Q Consensus 242 ~~~~~~~~vl~~l~~~~~~~g~~v-~i~~vli~gvND~~------e~~~~L~~~l~~~~~~vnLip~np~~~~~~~~~~s 314 (375)
.=+.+.+++.+.+ +.+++.+..+ -+.+-+=-+..+.. +.+..+.++++.++..+..+.+-. +-+-..++
T Consensus 144 KFGi~~~~~~~~l-~~~~~~~l~~~Gih~HiGS~~~~~~~~~~a~~~~~~~~~~~~~~g~~l~~ldiGG---Gf~~~~~~ 219 (394)
T cd06831 144 KFGTTLKNCRHLL-ECAKELDVQIVGVKFHVSSSCKEYQTYVHALSDARCVFDMAEEFGFKMNMLDIGG---GFTGSEIQ 219 (394)
T ss_pred CCCCCHHHHHHHH-HHHHHCCCeEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEeCC---CcCCCCCC
Confidence 1134677777776 3445556553 34433322333222 122445666666665444443221 11112234
Q ss_pred HHHHH-HHHHHHHhcC---CceEEeccCCCcchhcccchhhccccC
Q 017203 315 DDKVS-SFQKILRGSY---NIRTTVRKQMGQDISGACGQLVVNLPD 356 (375)
Q Consensus 315 ~e~i~-~f~~~l~~~~---Gi~v~vR~~~g~di~aaCGql~~~~~~ 356 (375)
.+++. .+.+.+. ++ +-.+++.-+.|+=+.|.||-|..+...
T Consensus 220 ~~~~~~~i~~~l~-~~~~~~~~~~li~EPGR~lva~ag~lvt~V~~ 264 (394)
T cd06831 220 LEEVNHVIRPLLD-VYFPEGSGIQIIAEPGSYYVSSAFTLAVNVIA 264 (394)
T ss_pred HHHHHHHHHHHHH-HhcCcCCCCEEEEeCChhhhhcceEEEEEEEE
Confidence 43332 2233343 22 223566678999999999999877643
No 240
>PLN02321 2-isopropylmalate synthase
Probab=22.92 E-value=5.2e+02 Score=27.92 Aligned_cols=85 Identities=16% Similarity=0.236 Sum_probs=0.0
Q ss_pred CCCHHHHHHHHHHhhhh---CCcceEEEEeCCCcccCHHHHHHHHHHhhCCCCCCCCCeEEEE-eCCch------hhHHH
Q 017203 144 NLSSGEIVEQLVHASRL---SNIRNVVFMGMGEPLNNYAALVEAVRIMTGLPFQVSPKRITVS-TVGIV------HAINK 213 (375)
Q Consensus 144 ~lt~~ei~~qi~~~~~~---~~i~~Ivf~GmGEPlln~~~l~~~i~~l~~~g~~i~~~~itis-TnG~~------~~i~~ 213 (375)
+.+.+|+++.+...... .+...+.|+-.-.=-.+++++.++++.+.+.| ...|.|. |+|+. ..++.
T Consensus 202 ~~t~ee~l~~~~~~V~~Ak~~G~~~v~fs~EDa~rtd~d~l~~~~~~a~~aG----a~~I~L~DTvG~~~P~~v~~li~~ 277 (632)
T PLN02321 202 RKTPDEVVEIARDMVKYARSLGCEDVEFSPEDAGRSDPEFLYRILGEVIKAG----ATTLNIPDTVGYTLPSEFGQLIAD 277 (632)
T ss_pred CCCHHHHHHHHHHHHHHHHHcCCceEEEecccCCCCCHHHHHHHHHHHHHcC----CCEEEecccccCCCHHHHHHHHHH
Q ss_pred HhhhCCCce-EEEEecCCCH
Q 017203 214 FHSDLPGLN-LAVSLHAPVQ 232 (375)
Q Consensus 214 l~~~~~~v~-laiSL~a~~~ 232 (375)
+.+..+... +.|++|..|+
T Consensus 278 l~~~~~~~~~v~i~vH~HND 297 (632)
T PLN02321 278 IKANTPGIENVIISTHCQND 297 (632)
T ss_pred HHHhcCCCCCceEEEEeCCC
No 241
>cd01967 Nitrogenase_MoFe_alpha_like Nitrogenase_MoFe_alpha_like: Nitrogenase MoFe protein, alpha subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. Three genetically distinct types of nitrogenase systems are known to exist: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). This group contains the alpha subunit of component 1 of all three different forms. The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. The role of the delta subunit is unknown. For MoFe, each alphabeta pair of subunits contains one
Probab=22.88 E-value=4.9e+02 Score=25.82 Aligned_cols=28 Identities=25% Similarity=0.241 Sum_probs=19.7
Q ss_pred EeeCCCCCCHHHHHHHHHHHhcCCCEEEE
Q 017203 270 IMLDGVNDEEQHAHQLGKLLETFQVVVNL 298 (375)
Q Consensus 270 vli~gvND~~e~~~~L~~~l~~~~~~vnL 298 (375)
.++.++|- ..++.+|.++++.+|..+|.
T Consensus 164 Niig~~~~-~~d~~el~~lL~~~Gi~~~~ 191 (406)
T cd01967 164 NIIGEYNI-GGDAWVIKPLLEELGIRVNA 191 (406)
T ss_pred EEEecccc-chhHHHHHHHHHHcCCEEEE
Confidence 34455443 45788889999988888765
No 242
>PRK11267 biopolymer transport protein ExbD; Provisional
Probab=22.84 E-value=4.3e+02 Score=22.24 Aligned_cols=56 Identities=9% Similarity=0.208 Sum_probs=39.0
Q ss_pred cCCCHHHHHHHHHHhhhhCCcceEEEEeCCCcccCHHHHHHHHHHhhCCCCCCCCCeEEEEe
Q 017203 143 SNLSSGEIVEQLVHASRLSNIRNVVFMGMGEPLNNYAALVEAVRIMTGLPFQVSPKRITVST 204 (375)
Q Consensus 143 r~lt~~ei~~qi~~~~~~~~i~~Ivf~GmGEPlln~~~l~~~i~~l~~~g~~i~~~~itisT 204 (375)
..++.+++...+........-..|++.+ +.-..|..+.++++.+++.|+ .++.+.|
T Consensus 79 ~~v~~~~L~~~L~~~~~~~~~~~V~I~a--D~~~~~~~vv~vmd~l~~aG~----~~v~l~t 134 (141)
T PRK11267 79 DPVTDETMITALDALTEGKKDTTIFFRA--DKTVDYETLMKVMDTLHQAGY----LKIGLVG 134 (141)
T ss_pred ccccHHHHHHHHHHHHhcCCCceEEEEc--CCCCCHHHHHHHHHHHHHcCC----CeEEEEe
Confidence 3466677777776554322223466665 777788999999999998874 5788877
No 243
>TIGR01430 aden_deam adenosine deaminase. This family includes the experimentally verified adenosine deaminases of mammals and E. coli. Other members of this family are predicted also to be adenosine deaminase, an enzyme of nucleotide degradation. This family is distantly related to AMP deaminase.
Probab=22.81 E-value=6.8e+02 Score=23.94 Aligned_cols=86 Identities=10% Similarity=0.067 Sum_probs=51.4
Q ss_pred CCHHHHHH----HHHHHHHhcCCcEEEEEEeeCCCCCCHHHHHHHHHHHhcCCCE-EEEeecCCCCCCCCCCCCcHHHHH
Q 017203 245 FPLEKLMN----ALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVV-VNLIPFNPIGSVSQFRTSSDDKVS 319 (375)
Q Consensus 245 ~~~~~vl~----~l~~~~~~~g~~v~i~~vli~gvND~~e~~~~L~~~l~~~~~~-vnLip~np~~~~~~~~~~s~e~i~ 319 (375)
.+.+++++ ++.+..++.|.++.+-+.+++. ++++.+.+.++++...+.. +--+.+.+. +.. .+.+.+.
T Consensus 103 ~~~~~~~~~~~~~i~~a~~~~gi~~~li~~~~r~--~~~~~~~~~~~~~~~~~~~~vvg~~l~~~----e~~-~~~~~~~ 175 (324)
T TIGR01430 103 ISPDTVVEAVLDGLDEAERDFGIKSRLILCGMRH--KQPEAAEETLELAKPYKEQTIVGFGLAGD----ERG-GPPPDFV 175 (324)
T ss_pred CCHHHHHHHHHHHHHHHHHhcCCeEEEEEEEeCC--CCHHHHHHHHHHHHhhccCcEEEecCCCC----CCC-CCHHHHH
Confidence 35555555 5555556678777776776653 4577888888887665432 211112211 122 2367778
Q ss_pred HHHHHHHhcCCceEEeccC
Q 017203 320 SFQKILRGSYNIRTTVRKQ 338 (375)
Q Consensus 320 ~f~~~l~~~~Gi~v~vR~~ 338 (375)
...+.++ ++|+.+++--.
T Consensus 176 ~~~~~A~-~~g~~i~~Ha~ 193 (324)
T TIGR01430 176 RAFAIAR-ELGLHLTVHAG 193 (324)
T ss_pred HHHHHHH-HCCCCeEEecC
Confidence 8888888 68888776543
No 244
>PF07002 Copine: Copine; InterPro: IPR010734 This represents a conserved region approximately 180 residues long within eukaryotic copines. Copines are Ca2+-dependent phospholipid-binding proteins that are thought to be involved in membrane-trafficking, and may also be involved in cell division and growth [].
Probab=22.73 E-value=3.4e+02 Score=23.28 Aligned_cols=66 Identities=18% Similarity=0.133 Sum_probs=36.0
Q ss_pred cccCCCCCcccCCCHHHHHHHHHHhhhhCCcceEEEEeCCCcccCHHHHHHHHHHhhC---CCCCCCCCeEEEEeCCch
Q 017203 133 FCATGTMGFKSNLSSGEIVEQLVHASRLSNIRNVVFMGMGEPLNNYAALVEAVRIMTG---LPFQVSPKRITVSTVGIV 208 (375)
Q Consensus 133 fC~~~~~~~~r~lt~~ei~~qi~~~~~~~~i~~Ivf~GmGEPlln~~~l~~~i~~l~~---~g~~i~~~~itisTnG~~ 208 (375)
||.++......-...+++++...+. +..|.|+| |+.-.+-+..+++..+. .+. ...-..|-|.|-.
T Consensus 52 F~ln~~~~~p~~~Gi~gvl~~Y~~~-----~~~v~l~G---PT~fapiI~~a~~~a~~~~~~~~--~Y~iLlIlTDG~i 120 (146)
T PF07002_consen 52 FPLNGNPQNPECQGIDGVLEAYRKA-----LPKVQLSG---PTNFAPIINHAAKIAKQSNQNGQ--QYFILLILTDGQI 120 (146)
T ss_pred eeeecCCCCCcccCHHHHHHHHHHH-----hhheEECC---CccHHHHHHHHHHHHhhhccCCc--eEEEEEEeccccc
Confidence 4455432222234457777766654 35799988 88654556666666652 121 1122346677754
No 245
>PLN02635 disproportionating enzyme
Probab=22.73 E-value=1.1e+02 Score=32.29 Aligned_cols=41 Identities=20% Similarity=0.324 Sum_probs=30.4
Q ss_pred CCCCCHHHHHHHHHHHhcCCCE-EEEeecCCCCC-----CCCCCCCc
Q 017203 274 GVNDEEQHAHQLGKLLETFQVV-VNLIPFNPIGS-----VSQFRTSS 314 (375)
Q Consensus 274 gvND~~e~~~~L~~~l~~~~~~-vnLip~np~~~-----~~~~~~~s 314 (375)
|+.|--+.+.+++++++..|.. +.++|.+|.++ .++|.+.|
T Consensus 44 GIGDfg~~a~~fvd~la~~G~~~wQilPL~pt~~~~~~~~SPYs~~S 90 (538)
T PLN02635 44 GIGDLGDEAFRFLDWLASTGCSVWQVLPLVPPGRKGGEDGSPYSGQD 90 (538)
T ss_pred CCcchHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCCCCCCccccc
Confidence 4666555677899999998864 88899999843 45676665
No 246
>PF02113 Peptidase_S13: D-Ala-D-Ala carboxypeptidase 3 (S13) family; InterPro: IPR000667 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This family of serine peptidases belong to MEROPS peptidase family S13 (D-Ala-D-Ala carboxypeptidase C, clan SE). The predicted active site residues for members of this family and family S12 occur in the motif SXXK. D-Ala-D-Ala carboxypeptidase C is involved in the metabolism of cell components []; it is synthesised with a leader peptide to target it to the cell membrane []. After cleavage of the leader peptide, the enzyme is retained in the membrane by a C-terminal anchor []. There are three families of serine-type D-Ala-D-Ala peptidase (designated S11, S12 and S13), which are also known as low molecular weight penicillin-binding proteins []. Family S13 comprises D-Ala-D-Ala peptidases that have sufficient sequence similarity around their active sites to assume a distant evolutionary relationship to other clan members; members of the S13 family also bind penicillin and have D-amino-peptidase activity. Proteases of family S11 have exclusive D-Ala-D-Ala peptidase activity, while some members of S12 are C beta-lactamases [].; GO: 0004185 serine-type carboxypeptidase activity, 0006508 proteolysis; PDB: 3A3F_B 3A3E_B 3A3D_A 3A3I_B 2Y59_C 1W8Q_A 3ZVT_B 3ZVW_B 2VGJ_B 1W79_D ....
Probab=22.65 E-value=1.2e+02 Score=30.99 Aligned_cols=42 Identities=12% Similarity=0.131 Sum_probs=31.2
Q ss_pred ceEEEEeCCCcccCHHHHHHHHHHhhCCCCCCCCCeEEEEeC
Q 017203 164 RNVVFMGMGEPLNNYAALVEAVRIMTGLPFQVSPKRITVSTV 205 (375)
Q Consensus 164 ~~Ivf~GmGEPlln~~~l~~~i~~l~~~g~~i~~~~itisTn 205 (375)
.++++-|.|+|++..+.+.++++.+++.|+.--.-.|.++.+
T Consensus 82 G~L~l~G~GDP~l~~~~l~~la~~l~~~Gi~~I~g~i~~D~s 123 (444)
T PF02113_consen 82 GDLYLKGGGDPSLTSEDLWALAAQLKAAGIKRITGDIILDDS 123 (444)
T ss_dssp SEEEEEECSBTTBCHHHHHHHHHHHHHTT-SEESSEEEEETT
T ss_pred CcEEEEecCCCccCHHHHHHHHHHHHHcCCCeEeeEEEEECc
Confidence 589999999999999999999999998874211124466554
No 247
>PRK11024 colicin uptake protein TolR; Provisional
Probab=22.60 E-value=4.6e+02 Score=21.99 Aligned_cols=56 Identities=13% Similarity=0.191 Sum_probs=37.8
Q ss_pred CCCHHHHHHHHHHhhhhCCcceEEEEeCCCcccCHHHHHHHHHHhhCCCCCCCCCeEEEEeC
Q 017203 144 NLSSGEIVEQLVHASRLSNIRNVVFMGMGEPLNNYAALVEAVRIMTGLPFQVSPKRITVSTV 205 (375)
Q Consensus 144 ~lt~~ei~~qi~~~~~~~~i~~Ivf~GmGEPlln~~~l~~~i~~l~~~g~~i~~~~itisTn 205 (375)
.++.+++..++........-..|.+.+ +.-..|..+.++++.+++.|+ .++++.|.
T Consensus 84 ~v~~~~L~~~l~~~~~~~~~~~V~i~a--D~~~~~~~vv~vmd~~k~aG~----~~v~l~t~ 139 (141)
T PRK11024 84 QLPEEQVVAEAKSRFKANPKTVFLIGG--AKDVPYDEIIKALNLLHSAGV----KSVGLMTQ 139 (141)
T ss_pred ccCHHHHHHHHHHHHhhCCCceEEEEc--CCCCCHHHHHHHHHHHHHcCC----CeEEEEec
Confidence 357777777666653322223455544 777778999999999998874 56777764
No 248
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=22.60 E-value=6.6e+02 Score=23.81 Aligned_cols=25 Identities=16% Similarity=0.244 Sum_probs=15.0
Q ss_pred eeCCCCC-CHHHHHHHHHHHhcCCCE
Q 017203 271 MLDGVND-EEQHAHQLGKLLETFQVV 295 (375)
Q Consensus 271 li~gvND-~~e~~~~L~~~l~~~~~~ 295 (375)
++.|+.. +.+++.++++.+++.|+.
T Consensus 76 viagvg~~~t~~ai~~a~~a~~~Gad 101 (293)
T PRK04147 76 LIAQVGSVNTAEAQELAKYATELGYD 101 (293)
T ss_pred EEecCCCCCHHHHHHHHHHHHHcCCC
Confidence 3344432 456677777777777764
No 249
>TIGR01278 DPOR_BchB light-independent protochlorophyllide reductase, B subunit. This enzyme describes the B subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme. This subunit shows homology to the nitrogenase molybdenum-iron protein. It catalyzes a step in bacteriochlorophyll biosynthesis.
Probab=22.34 E-value=5.8e+02 Score=26.53 Aligned_cols=63 Identities=14% Similarity=0.233 Sum_probs=38.3
Q ss_pred CHHHHHHHHHHHhcCCCEEEEe-ecCCCC------CCCCCC-CCcHHHHHHHHHHHHhcCCceEEeccCCC
Q 017203 278 EEQHAHQLGKLLETFQVVVNLI-PFNPIG------SVSQFR-TSSDDKVSSFQKILRGSYNIRTTVRKQMG 340 (375)
Q Consensus 278 ~~e~~~~L~~~l~~~~~~vnLi-p~np~~------~~~~~~-~~s~e~i~~f~~~l~~~~Gi~v~vR~~~g 340 (375)
+..|+.+|.++++++|..+|.+ |....- +...+. .+..+.-....+.|++++|++.....+.|
T Consensus 173 ~~~D~~elkrlL~~lGi~vn~v~p~g~s~~dl~~l~~A~~NIv~~~~~g~~~A~~Le~~fGiP~i~~~PiG 243 (511)
T TIGR01278 173 HRHDLIELRRLLKTLGIEVNVVAPWGASIADLARLPAAWLNICPYREIGLMAAEYLKEKFGQPYITTTPIG 243 (511)
T ss_pred CHHHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHhcccCcEEEEechHHHHHHHHHHHHHhCCCcccccccC
Confidence 4678999999999999998865 543220 001111 12334445677788767888754344555
No 250
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=22.03 E-value=5.2e+02 Score=23.61 Aligned_cols=62 Identities=15% Similarity=0.234 Sum_probs=38.5
Q ss_pred eEEEEeCCCcccCHHHHHHHHHHhhCCCCCCCCCeEEE-EeCCch-h-hHHHH----hhhCCCceEEEEecCCCH
Q 017203 165 NVVFMGMGEPLNNYAALVEAVRIMTGLPFQVSPKRITV-STVGIV-H-AINKF----HSDLPGLNLAVSLHAPVQ 232 (375)
Q Consensus 165 ~Ivf~GmGEPlln~~~l~~~i~~l~~~g~~i~~~~iti-sTnG~~-~-~i~~l----~~~~~~v~laiSL~a~~~ 232 (375)
.+.++...-|-.+++.+.++++.+.+.|. ..+.+ +|.|.. | .+.++ .+..+ ++.+++|..++
T Consensus 132 ~~~~~~~~~~~~~~~~l~~~~~~~~~~g~----~~i~l~Dt~G~~~P~~v~~li~~l~~~~~--~~~~~~H~Hn~ 200 (265)
T cd03174 132 EGSLEDAFGCKTDPEYVLEVAKALEEAGA----DEISLKDTVGLATPEEVAELVKALREALP--DVPLGLHTHNT 200 (265)
T ss_pred EEEEEeecCCCCCHHHHHHHHHHHHHcCC----CEEEechhcCCcCHHHHHHHHHHHHHhCC--CCeEEEEeCCC
Confidence 34443434455788899999999988763 34554 689964 3 33333 33333 26788887763
No 251
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=21.97 E-value=6.9e+02 Score=23.73 Aligned_cols=126 Identities=12% Similarity=0.077 Sum_probs=62.6
Q ss_pred CCCHHHHHHHHHHhhhhCCcceEEEEeC-CC-cccCHHHHHHHHHHhhCC-CCCCCCCeEEEEeCCchh-hH--HHHhhh
Q 017203 144 NLSSGEIVEQLVHASRLSNIRNVVFMGM-GE-PLNNYAALVEAVRIMTGL-PFQVSPKRITVSTVGIVH-AI--NKFHSD 217 (375)
Q Consensus 144 ~lt~~ei~~qi~~~~~~~~i~~Ivf~Gm-GE-Plln~~~l~~~i~~l~~~-g~~i~~~~itisTnG~~~-~i--~~l~~~ 217 (375)
.++.+.+-..+..... .++++|++.|. || +.|..++-.++++...+. + +...+.+.+.+... .+ .+.++.
T Consensus 22 ~iD~~~l~~li~~l~~-~Gv~gi~v~GstGE~~~Lt~eEr~~v~~~~~~~~~---g~~pvi~gv~~~t~~ai~~a~~a~~ 97 (296)
T TIGR03249 22 SFDEAAYRENIEWLLG-YGLEALFAAGGTGEFFSLTPAEYEQVVEIAVSTAK---GKVPVYTGVGGNTSDAIEIARLAEK 97 (296)
T ss_pred CcCHHHHHHHHHHHHh-cCCCEEEECCCCcCcccCCHHHHHHHHHHHHHHhC---CCCcEEEecCccHHHHHHHHHHHHH
Confidence 4666666666665544 57888887764 67 556666666666655443 1 11223344332222 22 233333
Q ss_pred CCCceEEEEecCCCHHHHhhhcCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEEeeCCCCCCHHHHHHHHH
Q 017203 218 LPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGK 287 (375)
Q Consensus 218 ~~~v~laiSL~a~~~~~r~~i~p~~~~~~~~~vl~~l~~~~~~~g~~v~i~~vli~gvND~~e~~~~L~~ 287 (375)
.. .+-.+. -.|. +. +.+-+.+++-.+......+.++.+- - .+|++-+++.+.+|++
T Consensus 98 ~G-adav~~-~pP~------y~----~~s~~~i~~~f~~v~~a~~~pvilY-n-~~g~~l~~~~~~~La~ 153 (296)
T TIGR03249 98 AG-ADGYLL-LPPY------LI----NGEQEGLYAHVEAVCESTDLGVIVY-Q-RDNAVLNADTLERLAD 153 (296)
T ss_pred hC-CCEEEE-CCCC------CC----CCCHHHHHHHHHHHHhccCCCEEEE-e-CCCCCCCHHHHHHHHh
Confidence 32 332222 1111 11 1234566666655555555665542 2 3566666666666654
No 252
>TIGR02512 Fe_only_hydrog hydrogenases, Fe-only. This model describes iron-only hydrogenases of anaerobic and microaerophilic bacteria and protozoa. This model is narrower, and covers a longer stretch of sequence, than Pfam model pfam02906. This family represents a division among families that belong to pfam02906, which also includes proteins such as nuclear prelamin A recognition factor in animals. Note that this family shows some heterogeneity in terms of periplasmic, cytosolic, or hydrogenosome location, NAD or NADP dependence, and overal protein protein length.
Probab=21.87 E-value=30 Score=34.52 Aligned_cols=37 Identities=16% Similarity=-0.038 Sum_probs=27.5
Q ss_pred EEEEeCCCcccCH---HHHHHHHHHhhCCCCCCCCCeEEEEeCCch
Q 017203 166 VVFMGMGEPLNNY---AALVEAVRIMTGLPFQVSPKRITVSTVGIV 208 (375)
Q Consensus 166 Ivf~GmGEPlln~---~~l~~~i~~l~~~g~~i~~~~itisTnG~~ 208 (375)
+.+++ |||+.++ ....+++..+++.| .+..++|++..
T Consensus 95 ~~~s~-ge~~~~~~~~~~~~~l~~~lk~lG-----f~~v~et~~~a 134 (374)
T TIGR02512 95 VRVAL-GEEFGMPIGTDVTGKMVAALRKLG-----FDYVFDTNFAA 134 (374)
T ss_pred HHHHH-HHHhCCCccchHHHHHHHHHHHcC-----CCEEEECcHHH
Confidence 45556 9999864 45678888888777 46889999854
No 253
>COG0816 Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis) [DNA replication, recombination, and repair]
Probab=21.68 E-value=3.3e+02 Score=23.29 Aligned_cols=59 Identities=19% Similarity=0.297 Sum_probs=36.7
Q ss_pred HHHHHHHHHhcCCCEEEE--eecCCCCCCCCCCCCcHHHHHHHHHHHHhcCCceEEeccCCCcch
Q 017203 281 HAHQLGKLLETFQVVVNL--IPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDI 343 (375)
Q Consensus 281 ~~~~L~~~l~~~~~~vnL--ip~np~~~~~~~~~~s~e~i~~f~~~l~~~~Gi~v~vR~~~g~di 343 (375)
++..|.++++...+..-+ +|+|..+ ...+..+.+.+|.+.|+...++++.+-.+|..-.
T Consensus 41 ~~~~l~~li~~~~~~~vVVGlP~~m~g----~~~~~~~~~~~f~~~L~~r~~lpv~l~DERltTv 101 (141)
T COG0816 41 DFNALLKLVKEYQVDTVVVGLPLNMDG----TEGPRAELARKFAERLKKRFNLPVVLWDERLSTV 101 (141)
T ss_pred hHHHHHHHHHHhCCCEEEEecCcCCCC----CcchhHHHHHHHHHHHHHhcCCCEEEEcCccCHH
Confidence 566777777766543222 3555442 2334667788888888766778777776665443
No 254
>PRK15063 isocitrate lyase; Provisional
Probab=21.63 E-value=3.5e+02 Score=27.70 Aligned_cols=83 Identities=14% Similarity=0.193 Sum_probs=48.7
Q ss_pred CHHHHHHHHHHHHHhcCCc-EEEEEEeeCCCCCCHHHHHHHHHHHhcCCCEEEEeecCCCCCCCCCCCCcHHHHHHHHHH
Q 017203 246 PLEKLMNALKEYQKNSQQK-IFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKI 324 (375)
Q Consensus 246 ~~~~vl~~l~~~~~~~g~~-v~i~~vli~gvND~~e~~~~L~~~l~~~~~~vnLip~np~~~~~~~~~~s~e~i~~f~~~ 324 (375)
.+++.++-...|.. |-. ++++. +. .+.++++++++-+... ...|++.||-......-...+.+++..|.+.
T Consensus 263 Gld~AI~Ra~AYa~--GAD~iw~Et----~~-~d~ee~~~fa~~v~~~-~P~~~layn~sPsfnW~~~~~~~~~~~f~~e 334 (428)
T PRK15063 263 GIEQAIARGLAYAP--YADLIWCET----ST-PDLEEARRFAEAIHAK-FPGKLLAYNCSPSFNWKKNLDDATIAKFQRE 334 (428)
T ss_pred CHHHHHHHHHHHhc--CCCEEEeCC----CC-CCHHHHHHHHHhhccc-CccceeecCCCCCcccccccCHHHHHHHHHH
Confidence 46776666656654 444 44432 12 2456666666655321 2456777764311122234689999999999
Q ss_pred HHhcCCceEEecc
Q 017203 325 LRGSYNIRTTVRK 337 (375)
Q Consensus 325 l~~~~Gi~v~vR~ 337 (375)
|. +.|+...+-.
T Consensus 335 L~-~~Gy~~~~~~ 346 (428)
T PRK15063 335 LG-AMGYKFQFIT 346 (428)
T ss_pred HH-HcCceEEEec
Confidence 99 7998765443
No 255
>PF10911 DUF2717: Protein of unknown function (DUF2717); InterPro: IPR020121 The proteins in this entry are uncharacterised.
Probab=21.63 E-value=64 Score=24.60 Aligned_cols=25 Identities=28% Similarity=0.430 Sum_probs=21.2
Q ss_pred CCCCCCCCCCCCHHHHHHHHhcCCC
Q 017203 39 PNCEWDEFPSLPSAAYSLLRSKFKP 63 (375)
Q Consensus 39 ~~~~~~~~~~l~~~~r~~l~~~~~~ 63 (375)
...++++++++|++..+.|.-.|..
T Consensus 8 ~l~np~DiP~ipra~aeyLqvrfN~ 32 (77)
T PF10911_consen 8 LLDNPDDIPDIPRAAAEYLQVRFNA 32 (77)
T ss_pred HhcCCcccCCccHHHHHHHHHHhcH
Confidence 3467899999999999999888764
No 256
>KOG2335 consensus tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=21.58 E-value=6.5e+02 Score=25.09 Aligned_cols=136 Identities=13% Similarity=0.146 Sum_probs=69.5
Q ss_pred CHHHHHHHHHHhhCC-CCCCCCCeEEEEeCCchhhHHHHh---hhCCCceEEEEecCCCHHHHhhhcCCCCCCCHHHHHH
Q 017203 177 NYAALVEAVRIMTGL-PFQVSPKRITVSTVGIVHAINKFH---SDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMN 252 (375)
Q Consensus 177 n~~~l~~~i~~l~~~-g~~i~~~~itisTnG~~~~i~~l~---~~~~~v~laiSL~a~~~~~r~~i~p~~~~~~~~~vl~ 252 (375)
|++-+-++++.+++. +. + ..+.|-.+.-...--+++ +..+ ++ .+.+|+-+.+++...+|.. +++. +.
T Consensus 125 ~~eLv~e~V~~v~~~l~~--p-Vs~KIRI~~d~~kTvd~ak~~e~aG-~~-~ltVHGRtr~~kg~~~~pa---d~~~-i~ 195 (358)
T KOG2335|consen 125 NPELVGEMVSAVRANLNV--P-VSVKIRIFVDLEKTVDYAKMLEDAG-VS-LLTVHGRTREQKGLKTGPA---DWEA-IK 195 (358)
T ss_pred CHHHHHHHHHHHHhhcCC--C-eEEEEEecCcHHHHHHHHHHHHhCC-Cc-EEEEecccHHhcCCCCCCc---CHHH-HH
Confidence 577888889998876 42 2 344455554332212222 2222 22 2567888877765544432 2322 22
Q ss_pred HHHHHHHhcCCcEEEEEEeeCCCCCCHHHHHHHHHHHhcCCCE-EEEeecCCCCCC--CCCCCCcHHHHHHHHHHHHhcC
Q 017203 253 ALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVV-VNLIPFNPIGSV--SQFRTSSDDKVSSFQKILRGSY 329 (375)
Q Consensus 253 ~l~~~~~~~g~~v~i~~vli~gvND~~e~~~~L~~~l~~~~~~-vnLip~np~~~~--~~~~~~s~e~i~~f~~~l~~~~ 329 (375)
++++-+.. .+| +.-.+++ +.+++....+.-.-.|+- -.=.=+||. -. ..+.+++.+-++++.++.+ ++
T Consensus 196 ~v~~~~~~--ipv----iaNGnI~-~~~d~~~~~~~tG~dGVM~arglL~NPa-~F~~~~~~~~~~~~~~~~l~~~~-e~ 266 (358)
T KOG2335|consen 196 AVRENVPD--IPV----IANGNIL-SLEDVERCLKYTGADGVMSARGLLYNPA-LFLTAGYGPTPWGCVEEYLDIAR-EF 266 (358)
T ss_pred HHHHhCcC--CcE----EeeCCcC-cHHHHHHHHHHhCCceEEecchhhcCch-hhccCCCCCCHHHHHHHHHHHHH-Hc
Confidence 23222111 222 2323333 455666555543222221 111225775 23 5678888999999999988 45
Q ss_pred C
Q 017203 330 N 330 (375)
Q Consensus 330 G 330 (375)
+
T Consensus 267 ~ 267 (358)
T KOG2335|consen 267 G 267 (358)
T ss_pred C
Confidence 5
No 257
>PRK14478 nitrogenase molybdenum-cofactor biosynthesis protein NifE; Provisional
Probab=21.06 E-value=9.2e+02 Score=24.81 Aligned_cols=72 Identities=14% Similarity=0.109 Sum_probs=39.4
Q ss_pred EEeeCCCCCCHHHHHHHHHHHhcCCCEEEE-eecCC-CC-----CCCCCCC-CcHHHHHHHHHHHHhcCCceEEeccCCC
Q 017203 269 YIMLDGVNDEEQHAHQLGKLLETFQVVVNL-IPFNP-IG-----SVSQFRT-SSDDKVSSFQKILRGSYNIRTTVRKQMG 340 (375)
Q Consensus 269 ~vli~gvND~~e~~~~L~~~l~~~~~~vnL-ip~np-~~-----~~~~~~~-~s~e~i~~f~~~l~~~~Gi~v~vR~~~g 340 (375)
+.++.++|.. .++.+|.++++.+|..++. ++... .. +...+.- ........+.+.|++++|++.......|
T Consensus 194 VNiiG~~~~~-gd~~elk~lL~~~Gl~v~~~~~~~~s~eei~~~~~A~lniv~~~~~~~~~A~~L~erfGiP~~~~~p~G 272 (475)
T PRK14478 194 INILGEYNLA-GELWQVKPLLDRLGIRVVACITGDARYDDVASAHRARANMMVCSGAMINLARKMEERYGIPFFEGSFYG 272 (475)
T ss_pred EEEEeCCCCC-CCHHHHHHHHHHcCCeEEEEcCCCCCHHHHHhcccCcEEEEEcHHHHHHHHHHHHHHhCCCEEecCCCc
Confidence 3355555544 5778889999999988773 32221 10 0001100 1133446678888877898764333334
Q ss_pred c
Q 017203 341 Q 341 (375)
Q Consensus 341 ~ 341 (375)
.
T Consensus 273 ~ 273 (475)
T PRK14478 273 I 273 (475)
T ss_pred H
Confidence 3
No 258
>TIGR02801 tolR TolR protein. The model describes the inner membrane protein TolR, part of the TolR/TolQ complex that transduces energy from the proton-motive force, through TolA, to an outer membrane complex made up of TolB and Pal (peptidoglycan-associated lipoprotein). The complex is required to maintain outer membrane integrity, and defects may cause a defect in the import of some organic compounds in addition to the resulting morphologic. While several gene pairs homologous to talR and tolQ may be found in a single genome, but the scope of this model is set to favor finding only bone fide TolR, supported by operon structure as well as by score.
Probab=20.93 E-value=4.7e+02 Score=21.38 Aligned_cols=54 Identities=11% Similarity=0.254 Sum_probs=36.5
Q ss_pred CCHHHHHHHHHHhhhhCCcceEEEEeCCCcccCHHHHHHHHHHhhCCCCCCCCCeEEEEe
Q 017203 145 LSSGEIVEQLVHASRLSNIRNVVFMGMGEPLNNYAALVEAVRIMTGLPFQVSPKRITVST 204 (375)
Q Consensus 145 lt~~ei~~qi~~~~~~~~i~~Ivf~GmGEPlln~~~l~~~i~~l~~~g~~i~~~~itisT 204 (375)
++.+++..++........-..|++.+ +.-..|..+.+++..+++.|+ .++.+.|
T Consensus 75 ~~~~~L~~~L~~~~~~~~~~~v~i~a--D~~~~~~~vv~vmd~~~~~G~----~~v~l~t 128 (129)
T TIGR02801 75 LDADELLAEIAAALAANPDTPVLIRA--DKTVPYGEVIKVMALLKQAGI----EKVGLIT 128 (129)
T ss_pred cCHHHHHHHHHHHHhhCCCceEEEEc--CCCCCHHHHHHHHHHHHHcCC----CeEEEee
Confidence 45666677766653322223466665 777788999999999998874 4677665
No 259
>PTZ00124 adenosine deaminase; Provisional
Probab=20.76 E-value=8e+02 Score=24.35 Aligned_cols=86 Identities=10% Similarity=0.201 Sum_probs=46.5
Q ss_pred CCCHHHHHHHHHHHHHhc----CCcEEEEEEeeCCCCCCHHHHHHHHHHHhcCCCEEEEeecCCCCCCCCCCCCcHHHHH
Q 017203 244 AFPLEKLMNALKEYQKNS----QQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVS 319 (375)
Q Consensus 244 ~~~~~~vl~~l~~~~~~~----g~~v~i~~vli~gvND~~e~~~~L~~~l~~~~~~vnLip~np~~~~~~~~~~s~e~i~ 319 (375)
+.+.+++++++.+.+++. ...|.+..++...-..+++.+.++++++...... ++.+-=.| .+... ....
T Consensus 137 gl~~~~vv~av~~g~~~a~~~~~~gI~~~lI~~~~R~~~~e~a~e~~~~a~~~~~~--vvGiDLaG--~E~~~---~~f~ 209 (362)
T PTZ00124 137 NLDIDLIHQAIVKGIKEAVELLDHKIEVGLLCIGDTGHDAAPIKESADFCLKHKAD--FVGFDHAG--HEVDL---KPFK 209 (362)
T ss_pred CCCHHHHHHHHHHHHHHHHhccCCCceEeEEEEecCCCCHHHHHHHHHHHHhccCC--eEEEeccC--CCCCc---HHHH
Confidence 346666776665433322 2345555555444445678889999988765332 23332221 11111 2244
Q ss_pred HHHHHHHhcCCceEEecc
Q 017203 320 SFQKILRGSYNIRTTVRK 337 (375)
Q Consensus 320 ~f~~~l~~~~Gi~v~vR~ 337 (375)
...+.++ ..|+++++--
T Consensus 210 ~~f~~Ar-~~Gl~~t~Ha 226 (362)
T PTZ00124 210 DIFDYVR-EAGVNLTVHA 226 (362)
T ss_pred HHHHHHH-HCCCCEEEEe
Confidence 5556677 5888877764
No 260
>COG0648 Nfo Endonuclease IV [DNA replication, recombination, and repair]
Probab=20.74 E-value=6.9e+02 Score=24.00 Aligned_cols=107 Identities=11% Similarity=0.119 Sum_probs=62.0
Q ss_pred CHHHHHHHHHHHHHhcCCcEEEEEEeeCC--CCCCHHHHHHHHHHHhcCC-CEEEEeecCCCCCCCCCCCCcHHHHHHHH
Q 017203 246 PLEKLMNALKEYQKNSQQKIFIEYIMLDG--VNDEEQHAHQLGKLLETFQ-VVVNLIPFNPIGSVSQFRTSSDDKVSSFQ 322 (375)
Q Consensus 246 ~~~~vl~~l~~~~~~~g~~v~i~~vli~g--vND~~e~~~~L~~~l~~~~-~~vnLip~np~~~~~~~~~~s~e~i~~f~ 322 (375)
.++++.+++.+.+...+..+.++++--.| +-.+-+++.++++.+.+.. +.|.+--.+-+. ..|--.+.+..+++.
T Consensus 119 ~l~~i~~~Ln~~~~~~~v~i~~e~~agegs~~g~~F~~L~eii~~~~~~~~igvCiDtcH~~A--agy~~~~~~~~~~vl 196 (280)
T COG0648 119 GLNRIAEALNELLEEEGVIILLENTAGEGSGKGTQFGELAEIIDLIEEKERIGVCIDTCHAFA--AGYDIITEEDFEKVL 196 (280)
T ss_pred HHHHHHHHHHHHhhccCCeEEEEEeccccCccccchhhHHHHHHhhcccCceEEEEEchhhhh--ccCCcCcHHHHHHHH
Confidence 46677777766654322334444443332 3345677888888887775 555554444442 233333346666666
Q ss_pred HHHHhcCCceEEeccCCCcchhcccchhhcccc
Q 017203 323 KILRGSYNIRTTVRKQMGQDISGACGQLVVNLP 355 (375)
Q Consensus 323 ~~l~~~~Gi~v~vR~~~g~di~aaCGql~~~~~ 355 (375)
+.+....|+. +++..+=.|+...||--+-++.
T Consensus 197 ~~~d~~~G~~-~~~~~Hlndsk~~~G~~kDRH~ 228 (280)
T COG0648 197 NEFDKVLGLE-YLKHIHLNDSKYPLGSNKDRHE 228 (280)
T ss_pred HHHHHHhChh-hheeEeecCccccccccccccc
Confidence 6655456665 5556666678778887666664
No 261
>PRK14508 4-alpha-glucanotransferase; Provisional
Probab=20.73 E-value=1.3e+02 Score=31.36 Aligned_cols=41 Identities=22% Similarity=0.363 Sum_probs=28.5
Q ss_pred CCCCCHHHHHHHHHHHhcCCCE-EEEeecCCCC-CCCCCCCCc
Q 017203 274 GVNDEEQHAHQLGKLLETFQVV-VNLIPFNPIG-SVSQFRTSS 314 (375)
Q Consensus 274 gvND~~e~~~~L~~~l~~~~~~-vnLip~np~~-~~~~~~~~s 314 (375)
|+.|--.++.+++++++..|.. +.+.|.||.+ ..++|.+.|
T Consensus 21 GiGDfg~dl~~~id~~~~~G~~~~qilPl~~~~~~~SPY~~~S 63 (497)
T PRK14508 21 GIGDFGKGAYEFIDFLAEAGQSYWQILPLGPTGYGDSPYQSFS 63 (497)
T ss_pred CCcchHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCCcCccc
Confidence 4555445888899999888864 7888888875 234666554
No 262
>COG1625 Fe-S oxidoreductase, related to NifB/MoaA family [Energy production and conversion]
Probab=20.71 E-value=7.1e+02 Score=25.31 Aligned_cols=133 Identities=14% Similarity=0.197 Sum_probs=65.2
Q ss_pred CCCCCcCccccCCCCCcc-------------------cCCCHHHHHHHHHHhhhhCCcceEEEEe-----------CCCc
Q 017203 125 VGCKMGCNFCATGTMGFK-------------------SNLSSGEIVEQLVHASRLSNIRNVVFMG-----------MGEP 174 (375)
Q Consensus 125 ~GCnl~C~fC~~~~~~~~-------------------r~lt~~ei~~qi~~~~~~~~i~~Ivf~G-----------mGEP 174 (375)
.-|+-+|.||+-...... ...+...+.+.+.+ .+++.|.|+= |++|
T Consensus 83 ~~~~~~d~~c~p~le~~~~r~~~~~~d~~~rL~~tsG~~~~lt~~~~~i~~----~gvdev~~SVhtT~p~lR~klm~n~ 158 (414)
T COG1625 83 KQCGNGDTFCYPDLEPRGRRARLYYKDDDIRLSFTSGSGFTLTNRAERIID----AGVDEVYFSVHTTNPELRAKLMKNP 158 (414)
T ss_pred eecCCCCcccCcchhhhhhHHHhhcCCccceeeeeeccceeccchHHHHHH----cCCCeeEEEEeeCCHHHHHHHhcCC
Confidence 459999999998643211 11233344444433 3566555543 4455
Q ss_pred ccCHHHHHHHHHHhhCCCCCCCCCeEEEEeCCchh------hHHHHhhhCCCceEEE-Ee-cCCCHHHHhhhcCCCCCCC
Q 017203 175 LNNYAALVEAVRIMTGLPFQVSPKRITVSTVGIVH------AINKFHSDLPGLNLAV-SL-HAPVQDVRCQIMPAARAFP 246 (375)
Q Consensus 175 lln~~~l~~~i~~l~~~g~~i~~~~itisTnG~~~------~i~~l~~~~~~v~lai-SL-~a~~~~~r~~i~p~~~~~~ 246 (375)
-. .++++.++.+.+.++.+ .--.|-+-|+.. .++.|.+.++..-+.+ .. .+.+ ..++.+.+.-....
T Consensus 159 ~A--~~~le~L~~f~~~~~~v--~a~iVl~PGvNdge~L~kT~~dL~~~g~~~~~~~~~~pvGlt-~~n~~~i~~~t~~~ 233 (414)
T COG1625 159 NA--EQLLELLRRFAERCIEV--HAQIVLCPGVNDGEELEKTLEDLEEWGAHEVILMRVVPVGLT-RYNRPGIRPPTPHE 233 (414)
T ss_pred cH--HHHHHHHHHHHHhhhhe--eeEEEEcCCcCcHHHHHHHHHHHHHhCcCceeEEEeecceee-ecCCCCCCCCCHHH
Confidence 43 45777777776654221 112244566542 2455555543322222 11 1111 11111333333345
Q ss_pred HHHHHHHHHHHHHhcC-CcEE
Q 017203 247 LEKLMNALKEYQKNSQ-QKIF 266 (375)
Q Consensus 247 ~~~vl~~l~~~~~~~g-~~v~ 266 (375)
++.+.+..+++.++.+ .+|+
T Consensus 234 l~~~k~i~re~~~E~~~~~V~ 254 (414)
T COG1625 234 LEEFKEIVREFDRELGSIRVT 254 (414)
T ss_pred HHHHHHHHHHHHHhcCceEEe
Confidence 6777777777777777 4443
No 263
>PF10281 Ish1: Putative stress-responsive nuclear envelope protein; InterPro: IPR018803 This group of proteins, found primarily in fungi, consists of putative stress-responsive nuclear envelope protein Ish1 and homologues [].
Probab=20.64 E-value=1.1e+02 Score=19.75 Aligned_cols=18 Identities=11% Similarity=0.243 Sum_probs=13.4
Q ss_pred CCHHHHHHHHHHcCCCcc
Q 017203 9 FDGGIIRAEFEKAGIKQH 26 (375)
Q Consensus 9 ~~~~~l~~~~~~~g~~~~ 26 (375)
++.++|++||.+.|.+.-
T Consensus 4 Ws~~~L~~wL~~~gi~~~ 21 (38)
T PF10281_consen 4 WSDSDLKSWLKSHGIPVP 21 (38)
T ss_pred CCHHHHHHHHHHcCCCCC
Confidence 567788888888887643
No 264
>cd01972 Nitrogenase_VnfE_like Nitrogenase_VnfE_like: VnfE subunit of the VnfEN complex_like. This group in addition to VnfE contains a subset of the alpha subunit of the nitrogenase MoFe protein and NifE-like proteins. The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of MoFe protein of the molybdenum(Mo)-nitrogenase. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to NifEN where it is further processed to FeMoco. VnfEN may similarly be a scaffolding protein for the iron-vanadium cofactor (FeVco) of the vanadium-dependent (V)-nitrogenase. NifE and NifN are essential for the Mo-nitrogenase, VnfE and VnfN are not essential for the V-nitrogenase. NifE and NifN can substitute when the vnfEN genes are inactivated.
Probab=20.42 E-value=4.8e+02 Score=26.32 Aligned_cols=63 Identities=16% Similarity=0.122 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHhcCCCEEEEeecC-CCC------CCCCCC-CCcHHHHHHHHHHHHhcCCceEE-eccCCCc
Q 017203 279 EQHAHQLGKLLETFQVVVNLIPFN-PIG------SVSQFR-TSSDDKVSSFQKILRGSYNIRTT-VRKQMGQ 341 (375)
Q Consensus 279 ~e~~~~L~~~l~~~~~~vnLip~n-p~~------~~~~~~-~~s~e~i~~f~~~l~~~~Gi~v~-vR~~~g~ 341 (375)
..++.+|.++++.+|..++.++-. ..- +...+. ......-..+.+.|++++|++.. +..+.|.
T Consensus 178 ~~d~~ei~~lL~~~Gi~v~~~~~~~~~~~ei~~~~~A~lniv~~~~~g~~~a~~Lee~~GiP~~~~~~P~G~ 249 (426)
T cd01972 178 QEDVDEFKRLLNELGLRVNAIIAGGCSVEELERASEAAANVTLCLDLGYYLGAALEQRFGVPEIKAPQPYGI 249 (426)
T ss_pred cccHHHHHHHHHHcCCeEEEEeCCCCCHHHHHhcccCCEEEEEChhHHHHHHHHHHHHhCCCeEecCCccCH
Confidence 467888888999888887755321 110 000000 01122335566677656887643 3334453
No 265
>COG1707 ACT domain-containing protein [General function prediction only]
Probab=20.23 E-value=2.6e+02 Score=24.81 Aligned_cols=61 Identities=21% Similarity=0.343 Sum_probs=43.0
Q ss_pred CHHHHHHHHHHhhhhCCcceEEEEeCCCcccCHHHHHHHHHHhhCC-CCCCCCCeEEEEeCCchhhHHHH
Q 017203 146 SSGEIVEQLVHASRLSNIRNVVFMGMGEPLNNYAALVEAVRIMTGL-PFQVSPKRITVSTVGIVHAINKF 214 (375)
Q Consensus 146 t~~ei~~qi~~~~~~~~i~~Ivf~GmGEPlln~~~l~~~i~~l~~~-g~~i~~~~itisTnG~~~~i~~l 214 (375)
--+++.+.+....+..++.-+++.| .++- -.+-++++.+++. |+ .-|+++.-|.+|....|
T Consensus 125 GEE~laEAVkAV~rLpRv~iLVLAG---slMG-GkIteaVk~lr~~hgI----~VISL~M~GSVpdVADl 186 (218)
T COG1707 125 GEEELAEAVKAVARLPRVGILVLAG---SLMG-GKITEAVKELREEHGI----PVISLNMFGSVPDVADL 186 (218)
T ss_pred ChHHHHHHHHHHhccccceeEEEec---cccc-chHHHHHHHHHHhcCC----eEEEeccCCCCcchhhe
Confidence 4577788887777666777778777 3443 3588899999877 73 45778888888765444
Done!