Query 017203
Match_columns 375
No_of_seqs 323 out of 2623
Neff 7.5
Searched_HMMs 29240
Date Mon Mar 25 10:37:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017203.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017203hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rfa_A Ribosomal RNA large sub 100.0 1.9E-83 6.6E-88 636.3 36.4 329 9-356 23-364 (404)
2 2yx0_A Radical SAM enzyme; pre 100.0 2.6E-30 8.7E-35 252.0 17.1 254 46-327 17-304 (342)
3 3c8f_A Pyruvate formate-lyase 99.9 2.7E-25 9.3E-30 204.5 21.8 196 125-334 27-244 (245)
4 2z2u_A UPF0026 protein MJ0257; 99.9 1.5E-26 5E-31 222.3 11.9 262 49-351 2-301 (311)
5 1tv8_A MOAA, molybdenum cofact 99.9 7.7E-21 2.6E-25 184.7 21.5 177 117-305 14-200 (340)
6 3can_A Pyruvate-formate lyase- 99.9 9.5E-21 3.2E-25 167.9 17.2 159 164-336 5-181 (182)
7 2a5h_A L-lysine 2,3-aminomutas 99.8 2.8E-19 9.5E-24 178.6 22.0 203 117-339 115-332 (416)
8 3iix_A Biotin synthetase, puta 99.8 7.2E-18 2.5E-22 163.9 22.8 190 121-326 57-257 (348)
9 3t7v_A Methylornithine synthas 99.8 2.9E-19 9.9E-24 174.4 12.2 244 43-325 2-265 (350)
10 1r30_A Biotin synthase; SAM ra 99.7 1.1E-14 3.8E-19 142.9 24.7 188 123-326 72-274 (369)
11 2qgq_A Protein TM_1862; alpha- 99.6 6.7E-14 2.3E-18 134.0 19.9 183 116-309 3-200 (304)
12 1olt_A Oxygen-independent copr 99.3 7.6E-11 2.6E-15 118.9 22.0 206 116-333 52-284 (457)
13 4fhd_A Spore photoproduct lyas 98.2 1.1E-05 3.8E-10 78.5 12.3 158 121-290 111-281 (368)
14 2cw6_A Hydroxymethylglutaryl-C 83.0 29 0.00098 32.0 16.4 179 143-342 22-214 (298)
15 2ztj_A Homocitrate synthase; ( 69.4 74 0.0025 30.4 13.5 176 142-344 19-205 (382)
16 2l69_A Rossmann 2X3 fold prote 61.2 52 0.0018 25.1 8.6 75 246-337 34-108 (134)
17 2v9d_A YAGE; dihydrodipicolini 54.5 1E+02 0.0034 29.0 11.2 127 144-286 48-182 (343)
18 3b4u_A Dihydrodipicolinate syn 54.0 1.3E+02 0.0045 27.4 12.7 127 144-286 20-158 (294)
19 3na8_A Putative dihydrodipicol 51.6 1.3E+02 0.0045 27.7 11.4 126 144-285 41-174 (315)
20 3lot_A Uncharacterized protein 50.6 1.6E+02 0.0054 27.4 12.8 160 143-325 27-223 (314)
21 2y7e_A 3-keto-5-aminohexanoate 48.6 1.4E+02 0.0048 27.3 10.8 159 144-326 30-200 (282)
22 3qze_A DHDPS, dihydrodipicolin 48.2 1.2E+02 0.004 28.1 10.4 128 144-287 40-175 (314)
23 3e96_A Dihydrodipicolinate syn 47.4 1.5E+02 0.0052 27.3 11.1 126 143-287 28-159 (316)
24 3eb2_A Putative dihydrodipicol 47.2 1.2E+02 0.004 27.8 10.2 129 144-286 21-155 (300)
25 3e49_A Uncharacterized protein 47.1 1.8E+02 0.0061 27.0 12.1 157 143-322 27-218 (311)
26 3daq_A DHDPS, dihydrodipicolin 44.7 1.2E+02 0.004 27.7 9.8 128 144-287 19-154 (292)
27 3chv_A Prokaryotic domain of u 43.8 1.9E+02 0.0066 26.4 14.2 161 143-326 29-198 (284)
28 1f6k_A N-acetylneuraminate lya 41.7 2E+02 0.0069 26.0 11.8 129 144-287 20-156 (293)
29 1ydn_A Hydroxymethylglutaryl-C 41.3 2E+02 0.0069 25.9 18.1 176 143-342 21-213 (295)
30 3fkr_A L-2-keto-3-deoxyarabona 41.1 2.1E+02 0.0073 26.2 12.9 130 144-287 25-162 (309)
31 3e02_A Uncharacterized protein 40.9 2.2E+02 0.0076 26.3 11.7 157 143-322 27-218 (311)
32 3tak_A DHDPS, dihydrodipicolin 40.7 1.4E+02 0.0049 27.0 9.7 131 143-287 17-153 (291)
33 3dz1_A Dihydrodipicolinate syn 40.7 1.6E+02 0.0055 27.1 10.1 127 144-287 25-160 (313)
34 3m5v_A DHDPS, dihydrodipicolin 40.5 2.1E+02 0.0073 26.0 12.6 130 144-288 24-161 (301)
35 2wul_A Glutaredoxin related pr 40.5 29 0.001 27.5 4.2 21 116-137 21-41 (118)
36 3ewb_X 2-isopropylmalate synth 40.1 2.2E+02 0.0074 26.0 17.4 205 142-372 21-245 (293)
37 2nuw_A 2-keto-3-deoxygluconate 38.3 2.3E+02 0.0077 25.6 11.1 127 143-285 15-147 (288)
38 3p14_A L-rhamnose isomerase; T 37.0 1E+02 0.0035 30.0 8.1 141 142-306 71-237 (424)
39 3si9_A DHDPS, dihydrodipicolin 36.7 2.5E+02 0.0087 25.8 11.8 128 144-287 39-174 (315)
40 3l21_A DHDPS, dihydrodipicolin 36.6 2.5E+02 0.0085 25.6 12.2 127 144-286 32-166 (304)
41 3c6c_A 3-keto-5-aminohexanoate 34.8 2.8E+02 0.0096 25.7 11.7 161 144-325 44-235 (316)
42 3gx8_A Monothiol glutaredoxin- 34.7 27 0.00091 27.5 3.1 66 115-183 16-93 (121)
43 3flu_A DHDPS, dihydrodipicolin 32.9 2.8E+02 0.0096 25.1 11.0 131 143-287 23-159 (297)
44 3ipz_A Monothiol glutaredoxin- 32.7 34 0.0012 26.2 3.4 67 115-184 18-93 (109)
45 3nvt_A 3-deoxy-D-arabino-heptu 31.1 79 0.0027 30.4 6.3 59 274-334 151-210 (385)
46 4dsd_A Putative periplasmic pr 29.0 96 0.0033 24.8 5.6 46 45-91 8-53 (129)
47 1vr6_A Phospho-2-dehydro-3-deo 28.9 1.9E+02 0.0064 27.4 8.4 67 267-334 107-174 (350)
48 3db7_A Putative calcium-regula 28.4 92 0.0031 24.8 5.4 46 45-92 9-54 (127)
49 3rmj_A 2-isopropylmalate synth 28.1 1.7E+02 0.0059 27.7 8.2 85 144-232 120-214 (370)
50 2wem_A Glutaredoxin-related pr 27.9 38 0.0013 26.6 2.9 66 116-184 21-96 (118)
51 1vs1_A 3-deoxy-7-phosphoheptul 27.6 79 0.0027 28.9 5.4 63 271-334 43-106 (276)
52 1zco_A 2-dehydro-3-deoxyphosph 27.6 1.2E+02 0.004 27.4 6.5 60 274-334 31-91 (262)
53 2kl5_A Uncharacterized protein 26.7 17 0.00059 28.4 0.6 9 126-134 87-95 (110)
54 3ewb_X 2-isopropylmalate synth 26.2 2.7E+02 0.0093 25.3 8.9 85 144-232 113-207 (293)
55 3v39_A D-alanyl-D-alanine carb 25.3 63 0.0022 31.5 4.5 30 164-193 68-97 (418)
56 2r8w_A AGR_C_1641P; APC7498, d 25.1 3.6E+02 0.012 24.9 9.7 131 143-287 50-186 (332)
57 1w5d_A Penicillin-binding prot 25.1 66 0.0023 31.6 4.7 43 164-206 89-131 (462)
58 3h5d_A DHDPS, dihydrodipicolin 24.8 4E+02 0.014 24.3 10.2 131 143-287 23-160 (311)
59 2rfg_A Dihydrodipicolinate syn 24.8 3.8E+02 0.013 24.2 9.7 129 145-287 18-152 (297)
60 3s5o_A 4-hydroxy-2-oxoglutarat 24.1 4.1E+02 0.014 24.2 12.9 130 144-287 31-168 (307)
61 3kws_A Putative sugar isomeras 24.0 3.6E+02 0.012 23.5 15.6 41 145-193 38-78 (287)
62 1xky_A Dihydrodipicolinate syn 23.8 4.1E+02 0.014 24.1 11.6 131 143-287 28-164 (301)
63 1o98_A 2,3-bisphosphoglycerate 23.7 3E+02 0.01 27.3 9.2 80 247-331 94-176 (511)
64 3hcn_A Ferrochelatase, mitocho 23.1 4.1E+02 0.014 25.0 9.7 105 172-292 209-324 (359)
65 1w3i_A EDA, 2-keto-3-deoxy glu 22.5 4.3E+02 0.015 23.8 12.8 126 143-284 15-146 (293)
66 3noy_A 4-hydroxy-3-methylbut-2 22.5 5E+02 0.017 24.6 10.0 34 312-351 246-281 (366)
67 1w79_A D-alanyl-D-alanine carb 22.4 80 0.0027 31.3 4.7 43 164-206 86-128 (489)
68 2ojp_A DHDPS, dihydrodipicolin 21.9 4.4E+02 0.015 23.7 9.9 131 143-287 17-153 (292)
69 3qfe_A Putative dihydrodipicol 21.4 4.7E+02 0.016 23.9 11.5 130 144-287 28-166 (318)
70 3eeg_A 2-isopropylmalate synth 21.2 4.8E+02 0.017 23.9 14.8 183 142-343 22-213 (325)
71 2dl0_A SAM and SH3 domain-cont 21.0 72 0.0024 24.2 3.2 48 3-55 15-62 (97)
72 3p6l_A Sugar phosphate isomera 21.0 3.4E+02 0.012 23.3 8.3 73 251-339 65-137 (262)
73 2wci_A Glutaredoxin-4; redox-a 20.9 71 0.0024 25.7 3.3 65 116-183 36-109 (135)
74 3d0c_A Dihydrodipicolinate syn 20.9 2.8E+02 0.0096 25.4 8.0 62 273-341 86-148 (314)
75 2lqo_A Putative glutaredoxin R 20.7 37 0.0012 25.4 1.4 67 116-189 5-83 (92)
76 2l7x_A Envelope glycoprotein; 20.0 27 0.00091 25.1 0.4 11 127-137 28-39 (77)
No 1
>3rfa_A Ribosomal RNA large subunit methyltransferase N; radical SAM, S-adenosylmethionine, iron sulfur cluster, oxidoreductase; HET: SAM; 2.05A {Escherichia coli} PDB: 3rf9_A*
Probab=100.00 E-value=1.9e-83 Score=636.29 Aligned_cols=329 Identities=37% Similarity=0.607 Sum_probs=298.2
Q ss_pred CCHHHHHHHHHHcCCCcchHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHHhcCCCCCcccceEEeCCCCCeEEEEEEecC
Q 017203 9 FDGGIIRAEFEKAGIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYSLLRSKFKPLTSTLHSVVDSSDDVTTKLLVKLQN 88 (375)
Q Consensus 9 ~~~~~l~~~~~~~g~~~~~~~qi~~~~~~~~~~~~~~~~~l~~~~r~~l~~~~~~~~~~~~~~~~s~dg~t~k~l~~~~d 88 (375)
|+++||++++.++|+|+|||+|||+|||++++.+|++||||||++|++|++.|.+..+++++.+.|+|| |+||||+| |
T Consensus 23 ~~~~~l~~~~~~~g~~~fra~qi~~w~~~~~~~~~~~mt~l~k~~r~~l~~~~~~~~~~~~~~~~s~dg-t~K~l~~l-d 100 (404)
T 3rfa_A 23 LNRQQMREFFKDLGEKPFRADQVMKWMYHYCCDNFDEMTDINKVLRGKLKEVAEIRAPEVVEEQRSSDG-TIKWAIAV-G 100 (404)
T ss_dssp CCHHHHHHHHHHTTCCHHHHHHHHHHHHHSCCCCGGGCTTSCHHHHHHHHHHEECCCCEEEEEEECTTS-CEEEEEEE-T
T ss_pred CCHHHHHHHHHHcCCcchHHHHHHHHHHhcCCCChHHhcccCHHHHHHHHhcCCCCCCceEEEEECCCC-CEEEEEEc-C
Confidence 679999999999999999999999999999999999999999999999999999999999999999999 99999999 9
Q ss_pred CCeEEEEEeeecCCCCCCCCCCCCCCCceEEEEeecCCCCCcCccccCCCCCcccCCCHHHHHHHHHHhhhh--------
Q 017203 89 GGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRL-------- 160 (375)
Q Consensus 89 g~~ve~v~i~~~~~~~~~~g~~~~~~~r~tl~vssq~GCnl~C~fC~~~~~~~~r~lt~~ei~~qi~~~~~~-------- 160 (375)
|..||||+||++ .|.|+|||||+||||+|.||+++..++.++++++||++|+..+...
T Consensus 101 g~~iEtV~i~~~--------------~r~tlcVSsq~GCnl~C~fC~tg~~g~~r~Lt~eEIv~qv~~~~~~~~~~g~~g 166 (404)
T 3rfa_A 101 DQRVETVYIPED--------------DRATLCVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVGAAKVTG 166 (404)
T ss_dssp TEEEEEEEEECS--------------SCEEEECCCEEECSSCCTTCGGGTTCEEEECCHHHHHHHHHHHHHHHCCHHHHS
T ss_pred CceEEEEEEecC--------------CCceEEEEeCCCCCCcCCCCCCCCCCCCCcCCHHHHHHHHHHHHHHhhhccccc
Confidence 999999999985 5799999999999999999999999899999999999999876532
Q ss_pred -CCcceEEEEeCCCcccCHHHHHHHHHHhhCC-CCCCCCCeEEEEeCCchhhHHHHhhhCCCceEEEEecCCCHHHHhhh
Q 017203 161 -SNIRNVVFMGMGEPLNNYAALVEAVRIMTGL-PFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQI 238 (375)
Q Consensus 161 -~~i~~Ivf~GmGEPlln~~~l~~~i~~l~~~-g~~i~~~~itisTnG~~~~i~~l~~~~~~v~laiSL~a~~~~~r~~i 238 (375)
.++++|+||||||||+|++++.++++.+++. |++++.++++|+|||++|.+++|++.. .+.|+||||+++++.|+++
T Consensus 167 g~~i~~Ivf~GgGEPLln~d~v~~~i~~lk~~~Gl~~s~r~itlsTnG~~p~i~~L~~~~-d~~LaiSLka~d~e~~~~i 245 (404)
T 3rfa_A 167 QRPITNVVMMGMGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMI-DVALAISLHAPNDEIRDEI 245 (404)
T ss_dssp SCSCSEEEECSSSCGGGCHHHHHHHHHHHHSTTTTCCCGGGEEEEESCCHHHHHHHHHHC-CCEEEEECCCSSHHHHHHH
T ss_pred CCCccEEEEeCCCCcccCHHHHHHHHHHHHhhcCcCcCCCceEEECCCcHHHHHHHHHhh-cceEEecccCCCHHHHHHh
Confidence 2588999999999999999999999999996 999999999999999999889999874 5789999999999999999
Q ss_pred cCCCCCCCHHHHHHHHHHHHHhcCC---cEEEEEEeeCCCCCCHHHHHHHHHHHhcCCCEEEEeecCCCCCCCCCCCCcH
Q 017203 239 MPAARAFPLEKLMNALKEYQKNSQQ---KIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSD 315 (375)
Q Consensus 239 ~p~~~~~~~~~vl~~l~~~~~~~g~---~v~i~~vli~gvND~~e~~~~L~~~l~~~~~~vnLip~np~~~~~~~~~~s~ 315 (375)
+|++++++++++++++++|+.++|. +|+++|+|+||+||+++++++|++|+++++++||||||||. ++.+|++|+.
T Consensus 246 ~pv~~~~~le~vl~ai~~~~~~~g~~~~~V~ie~vLI~GvNDs~e~~~~La~ll~~l~~~VnLIpynP~-~~~~~~~ps~ 324 (404)
T 3rfa_A 246 VPINKKYNIETFLAAVRRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHQLAELLKDTPCKINLIPWNPF-PGAPYGRSSN 324 (404)
T ss_dssp SGGGGTSCHHHHHHHHHHHHHHCTTTTTCEEEEEEEBTTTTCSHHHHHHHHHHTTTSCEEEEEEECCCC-TTCCCCBCCH
T ss_pred cCCccCCCHHHHHHHHHHHHHHhCCCcccEEEEEEEecCCCCCHHHHHHHHHHHHcCCCcEEEEeccCC-CCCCCCCCCH
Confidence 9999999999999999989888888 99999999999999999999999999999999999999998 5788999999
Q ss_pred HHHHHHHHHHHhcCCceEEeccCCCcchhcccchhhccccC
Q 017203 316 DKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPD 356 (375)
Q Consensus 316 e~i~~f~~~l~~~~Gi~v~vR~~~g~di~aaCGql~~~~~~ 356 (375)
+++++|+++|+ ++|+.+++|+++|.||+||||||+.+..+
T Consensus 325 e~i~~f~~iL~-~~Gi~vtiR~~~G~di~aaCGQL~~~~~~ 364 (404)
T 3rfa_A 325 SRIDRFSKVLM-SYGFTTIVRKTRGDDIDAACGQLAGDVID 364 (404)
T ss_dssp HHHHHHHHHHH-HTTCEEEECCCCCC---------------
T ss_pred HHHHHHHHHHH-HcCCcEEEcCCCCcccccccccchhhhhh
Confidence 99999999999 79999999999999999999999987654
No 2
>2yx0_A Radical SAM enzyme; predicted tRNA modification enzyme, metal binding protein, structural genomics, NPPSFA; 2.21A {Pyrococcus horikoshii}
Probab=99.97 E-value=2.6e-30 Score=252.03 Aligned_cols=254 Identities=17% Similarity=0.175 Sum_probs=196.4
Q ss_pred CCCCCHHHHHHHHh-cCCCCCcccceEEeCCCCCeEEEEEEecCCCeEEEEEeeecCCCCCCCCCCCCCCCceEEEEeec
Q 017203 46 FPSLPSAAYSLLRS-KFKPLTSTLHSVVDSSDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQ 124 (375)
Q Consensus 46 ~~~l~~~~r~~l~~-~~~~~~~~~~~~~~s~dg~t~k~l~~~~dg~~ve~v~i~~~~~~~~~~g~~~~~~~r~tl~vssq 124 (375)
-+|+|+++|+.|++ .|.+.. . .+....-++ |.|+++ .+|..+++++++.. .+..++++++
T Consensus 17 ~~~~~~~~r~~l~~~~~~~~~-~-~s~~~~~~~-~~~~l~--~~~~~~~~~~~~~~--------------~~~~l~i~~~ 77 (342)
T 2yx0_A 17 NPNMPKEVAELFRKQHYEIVG-R-HSGVKLCHW-LKKSLT--EGRFCYKQKFYGIH--------------SHRCLQMTPV 77 (342)
T ss_dssp CCSSCHHHHHHHHHTTCEEEB-T-TEEECCCTT-HHHHHH--HCCCCHHHHHHCCC--------------GGGEEEEESC
T ss_pred cCcchHHHHHHHhhCCceEec-c-ccceEeccc-cHhhhc--CCCccceeEEeeec--------------CCCeEEEEeC
Confidence 47999999999987 466531 1 111112255 677766 78999999888653 4577889888
Q ss_pred -CCCCCcCccccCCCCC------cccCCCHHHHHHHHHHhhhh-------------------CCcceEEEEeCCCcccCH
Q 017203 125 -VGCKMGCNFCATGTMG------FKSNLSSGEIVEQLVHASRL-------------------SNIRNVVFMGMGEPLNNY 178 (375)
Q Consensus 125 -~GCnl~C~fC~~~~~~------~~r~lt~~ei~~qi~~~~~~-------------------~~i~~Ivf~GmGEPlln~ 178 (375)
.|||++|.||+++... ..+.+++++|++++...... ..+.+|+|+|+|||++++
T Consensus 78 ~~gCnl~C~fC~~~~~~~~~~~~~~~~~~~eei~~~i~~~~~~~~~~~~g~~~v~~~~~~e~~~~~~v~~sggGEPll~~ 157 (342)
T 2yx0_A 78 LAWCTHNCIFCWRPMENFLGTELPQPWDDPAFIVEESIKAQRKLLIGYKGNPKVDKKKFEEAWNPTHAAISLSGEPMLYP 157 (342)
T ss_dssp SSCCSBCCTTCCCSSSSCSCSSCCSSCCCHHHHHHHHHHHHHHHHTTCC--CCSCHHHHHHHTSCCEEEECSSSCGGGST
T ss_pred hhhhhCcCcccCCCCCCCcccccccCcCCHHHHHHHHHHHHHHHhhccCCCcccchhhhhhccCCCEEEEcCCCcccchh
Confidence 5999999999997442 34678999999998765321 135789999559999996
Q ss_pred HHHHHHHHHhhCCCCCCCCCeEEEEeCCchhh-HHHHhhhC-CCceEEEEecCCCHHHHhhhcCCCCCCCHHHHHHHHHH
Q 017203 179 AALVEAVRIMTGLPFQVSPKRITVSTVGIVHA-INKFHSDL-PGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKE 256 (375)
Q Consensus 179 ~~l~~~i~~l~~~g~~i~~~~itisTnG~~~~-i~~l~~~~-~~v~laiSL~a~~~~~r~~i~p~~~~~~~~~vl~~l~~ 256 (375)
++.++++.+++.| .+++++|||+.+. +++|.+.+ ....+.||||+++++.++++.+.+.++++++++++++.
T Consensus 158 -~l~~ll~~~~~~g-----~~i~l~TNG~~~e~l~~L~~~g~~~~~l~isld~~~~e~~~~i~~~~~~~~~~~~~~~i~~ 231 (342)
T 2yx0_A 158 -YMGDLVEEFHKRG-----FTTFIVTNGTIPERLEEMIKEDKLPTQLYVSITAPDIETYNSVNIPMIPDGWERILRFLEL 231 (342)
T ss_dssp -THHHHHHHHHHTT-----CEEEEEECSCCHHHHHHHHHTTCCCSEEEEEECCSSHHHHHHHHCBSSSCHHHHHHHHHHH
T ss_pred -hHHHHHHHHHHCC-----CcEEEEcCCCcHHHHHHHHhcCCCCCEEEEEccCCCHHHHHHHhCCCcccHHHHHHHHHHH
Confidence 7999999999876 4799999999864 56777643 23679999999999999999876656789999999955
Q ss_pred HHHhcCCcEEEEEEeeCCCCCCHHHHHHHHHHHhcCCC-EEEEeecCCCCCC----CCCCCCcHHHHHHHHHHHHh
Q 017203 257 YQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQV-VVNLIPFNPIGSV----SQFRTSSDDKVSSFQKILRG 327 (375)
Q Consensus 257 ~~~~~g~~v~i~~vli~gvND~~e~~~~L~~~l~~~~~-~vnLip~np~~~~----~~~~~~s~e~i~~f~~~l~~ 327 (375)
+.+.|.++.+++++++|.|+. ++++++++++++++ .|+++||+|.+.. ..+..|+.+++.+|.+.+++
T Consensus 232 -l~~~g~~v~i~~~l~~g~n~~--~~~~l~~~l~~~~~~~i~l~~~~~~~~~~~~l~~~~~~~~e~~~~~~~~l~~ 304 (342)
T 2yx0_A 232 -MRDLPTRTVVRLTLVKGENMH--SPEKYAKLILKARPMFVEAKAYMFVGYSRNRLTINNMPSHQDIREFAEALVK 304 (342)
T ss_dssp -HTTCSSEEEEEEEECTTTTCC--CHHHHHHHHHHHCCSEEEEEECC------CCCCGGGSCCHHHHHHHHHHHHT
T ss_pred -HHhCCCCEEEEEEEECCccHH--HHHHHHHHHHHcCCCEEEEEeeeecCCCcccccccCCCCHHHHHHHHHHHHH
Confidence 456788999999999999986 49999999998864 6999999987421 13568889999999999983
No 3
>3c8f_A Pyruvate formate-lyase 1-activating enzyme; adoMet radical, SAM radical, activase, glycyl radical, 4Fe- 4S, carbohydrate metabolism, cytoplasm; HET: MT2 PGE; 2.25A {Escherichia coli} PDB: 3cb8_A*
Probab=99.94 E-value=2.7e-25 Score=204.48 Aligned_cols=196 Identities=17% Similarity=0.362 Sum_probs=159.5
Q ss_pred CCCCCcCccccCCCC---CcccCCCHHHHHHHHHHhhhh--CCcceEEEEeCCCcccCHHHHHHHHHHhhCCCCCCCCCe
Q 017203 125 VGCKMGCNFCATGTM---GFKSNLSSGEIVEQLVHASRL--SNIRNVVFMGMGEPLNNYAALVEAVRIMTGLPFQVSPKR 199 (375)
Q Consensus 125 ~GCnl~C~fC~~~~~---~~~r~lt~~ei~~qi~~~~~~--~~i~~Ivf~GmGEPlln~~~l~~~i~~l~~~g~~i~~~~ 199 (375)
.|||++|.||+.+.. ...+.++.+++++.+...... ..+..|+|+| |||+++++.+.++++.+++.| .+
T Consensus 27 ~~Cn~~C~~C~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~i~~~G-GEP~l~~~~l~~l~~~~~~~~-----~~ 100 (245)
T 3c8f_A 27 QGCLMRCLYCHNRDTWDTHGGKEVTVEDLMKEVVTYRHFMNASGGGVTASG-GEAILQAEFVRDWFRACKKEG-----IH 100 (245)
T ss_dssp SCCSCCCTTCSCGGGCCTTCSEEECHHHHHHHHGGGHHHHTSTTCEEEEEE-SCGGGGHHHHHHHHHHHHTTT-----CC
T ss_pred CCCCCCCCCCCCchhcccccCccCCHHHHHHHHHHhhhhhcCCCCeEEEEC-CCcCCCHHHHHHHHHHHHHcC-----Cc
Confidence 699999999998642 234568999999998765542 2467899999 999999877899999999876 46
Q ss_pred EEEEeCCch----hhHHHHhhhCCCceEEEEecCCCHHHHhhhcCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEEeeCCC
Q 017203 200 ITVSTVGIV----HAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGV 275 (375)
Q Consensus 200 itisTnG~~----~~i~~l~~~~~~v~laiSL~a~~~~~r~~i~p~~~~~~~~~vl~~l~~~~~~~g~~v~i~~vli~gv 275 (375)
++++|||+. ..+.++.+. . ..+.||+++.+++.++++.+. ++++++++++ .+.+.|.++.+++++++|+
T Consensus 101 i~i~Tng~~~~~~~~~~~l~~~-~-~~v~isld~~~~~~~~~~~~~----~~~~~~~~i~-~l~~~g~~v~i~~~~~~g~ 173 (245)
T 3c8f_A 101 TCLDTNGFVRRYDPVIDELLEV-T-DLVMLDLKQMNDEIHQNLVGV----SNHRTLEFAK-YLANKNVKVWIRYVVVPGW 173 (245)
T ss_dssp EEEEECCCCCCCCHHHHHHHHT-C-SEEEEECCCSSHHHHHHHHSS----CSHHHHHHHH-HHHHHTCCEEEEEEECTTT
T ss_pred EEEEeCCCcCcCHHHHHHHHHh-C-CEEEEeCCCCCHHHhhhccCC----CHHHHHHHHH-HHHhcCCEEEEEEeecCCC
Confidence 999999965 245666664 2 358999999999999998652 4599999995 4567789999999999999
Q ss_pred CCCHHHHHHHHHHHhcCC--CEEEEeecCCCCC-----------CCCCCCCcHHHHHHHHHHHHhcCCceEE
Q 017203 276 NDEEQHAHQLGKLLETFQ--VVVNLIPFNPIGS-----------VSQFRTSSDDKVSSFQKILRGSYNIRTT 334 (375)
Q Consensus 276 ND~~e~~~~L~~~l~~~~--~~vnLip~np~~~-----------~~~~~~~s~e~i~~f~~~l~~~~Gi~v~ 334 (375)
||+.+++.++++++++++ ..+++.||+|.+. ...+++|+.++++++.+.++ +.|+.|+
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~G~~v~ 244 (245)
T 3c8f_A 174 SDDDDSAHRLGEFTRDMGNVEKIELLPYHELGKHKWVAMGEEYKLDGVKPPKKETMERVKGILE-QYGHKVM 244 (245)
T ss_dssp TCCHHHHHHHHHHHHHHCCEEEEEEEECCCCSHHHHHHTTCCCTTTTCCCCCHHHHHHHHHHHH-TTTCCBC
T ss_pred CCCHHHHHHHHHHHHhcCCCceeEEEeccccChhHHHhhCcccccccCCCCCHHHHHHHHHHHH-hcCCeec
Confidence 999999999999999998 4589999999641 12457889999999999999 7898764
No 4
>2z2u_A UPF0026 protein MJ0257; metal binding protein; 2.40A {Methanocaldococcus jannaschii}
Probab=99.93 E-value=1.5e-26 Score=222.29 Aligned_cols=262 Identities=18% Similarity=0.228 Sum_probs=175.2
Q ss_pred CCHHHHHHHHhc-CCCCCcccceEEeCCCCCeEEEEEEecCCCeEEEEEeeecCCCCCCCCCCCCCCCceEEEEeec-CC
Q 017203 49 LPSAAYSLLRSK-FKPLTSTLHSVVDSSDDVTTKLLVKLQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQ-VG 126 (375)
Q Consensus 49 l~~~~r~~l~~~-~~~~~~~~~~~~~s~dg~t~k~l~~~~dg~~ve~v~i~~~~~~~~~~g~~~~~~~r~tl~vssq-~G 126 (375)
.|+++++.|.+. |.+.- ++...--+. |.+.+. .+|..+++++++.. .+.+++++++ .|
T Consensus 2 ~~~~~~~~l~~~gy~~~~---~s~~~~~~w-~~~~l~--~~~~~~~~~~~~~~--------------~~~~l~i~~t~~~ 61 (311)
T 2z2u_A 2 IPEEIYKILRKQRYQIDG---HTAVKLCGW-VRKKML--EDKNCYKSKFYGIE--------------THRCIQCTPSVIW 61 (311)
T ss_dssp CCHHHHHHHHTTTCEEET---TEEEECCTT-HHHHHT--TCCCCHHHHHHCCC--------------GGGEEEEESCSSC
T ss_pred CchHHHHHHHhcCceeec---ccceeeccC-hHhhhc--CCCceEEEEEeeec--------------CCCeEEeccChhH
Confidence 367788888764 44322 222111233 334333 67888887776542 4578999999 69
Q ss_pred CCCcCccccCCCC---C-------cccCCCHHHHHHHHHHhhhh--------------------CCcceEEEEeCCCccc
Q 017203 127 CKMGCNFCATGTM---G-------FKSNLSSGEIVEQLVHASRL--------------------SNIRNVVFMGMGEPLN 176 (375)
Q Consensus 127 Cnl~C~fC~~~~~---~-------~~r~lt~~ei~~qi~~~~~~--------------------~~i~~Ivf~GmGEPll 176 (375)
||++|.||+++.. + ..+.++++++++++...... ..+..|+|+|+||||+
T Consensus 62 Cn~~C~fC~~~~~~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~~~~~~~g~~~v~~~~r~~~~~~~~~i~~s~gGEPll 141 (311)
T 2z2u_A 62 CQQNCIFCWRVLPRDIGIDISQIKEPKWEEPEVVYEKILAMHKRIIMGYAGVLDRVGEKKFKEALEPKHVAISLSGEPTL 141 (311)
T ss_dssp CSCC----------------CCSCCCCCCCHHHHHHHHHHHHHHHHHGGGGGHHHHCHHHHHHHTSCCEEEECSSSCGGG
T ss_pred HhCcCcccCCCCCCcccccccccCccccCCHHHHHHHHHHHHHHHhhccCCCcCcchhhhhhhccCCCEEEEeCCcCccc
Confidence 9999999998642 1 23679999999887654210 1246899994499999
Q ss_pred CHHHHHHHHHHhhCCCCCCCCCeEEEEeCCchhhHHHHhhhCCCceEEEEecCCCHHHHhhhcCCCCCCCHHHHHHHHHH
Q 017203 177 NYAALVEAVRIMTGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKE 256 (375)
Q Consensus 177 n~~~l~~~i~~l~~~g~~i~~~~itisTnG~~~~i~~l~~~~~~v~laiSL~a~~~~~r~~i~p~~~~~~~~~vl~~l~~ 256 (375)
++ .+.++++.+++.| .+++++|||+.+. .+.... ...+.||||+++++.++++.+. .+.+++.++++++.
T Consensus 142 ~~-~l~~li~~~~~~g-----~~~~l~TNG~~~~--~l~~L~-~~~v~isld~~~~~~~~~i~~~-~~~~~~~v~~~i~~ 211 (311)
T 2z2u_A 142 YP-YLDELIKIFHKNG-----FTTFVVSNGILTD--VIEKIE-PTQLYISLDAYDLDSYRRICGG-KKEYWESILNTLDI 211 (311)
T ss_dssp ST-THHHHHHHHHHTT-----CEEEEEECSCCHH--HHHHCC-CSEEEEECCCSSTTTC----CC-CHHHHHHHHHHHHH
T ss_pred hh-hHHHHHHHHHHCC-----CcEEEECCCCCHH--HHHhCC-CCEEEEEeecCCHHHHHHHhCC-ccchHHHHHHHHHH
Confidence 85 6999999999876 4799999999852 233323 3679999999999999998764 33579999999965
Q ss_pred HHHhcCCcEEEEEEeeCCCCCCHHHHHHHHHHHhcCCC-EEEEeecCCCCCCCC-----CCCCcHHHHHHHHHHHHhcCC
Q 017203 257 YQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQV-VVNLIPFNPIGSVSQ-----FRTSSDDKVSSFQKILRGSYN 330 (375)
Q Consensus 257 ~~~~~g~~v~i~~vli~gvND~~e~~~~L~~~l~~~~~-~vnLip~np~~~~~~-----~~~~s~e~i~~f~~~l~~~~G 330 (375)
+ .+.| ++.+++++++|+|+ ++++++++++++++ .|+++||+|.+ ... ...|+.+++.+|.+.+.+..|
T Consensus 212 l-~~~g-~v~i~~~~~~g~n~---~~~~~~~~~~~~~~~~i~l~~~~p~g-~~~~~~~~~~~~~~~e~~~~~~~l~~~~g 285 (311)
T 2z2u_A 212 L-KEKK-RTCIRTTLIRGYND---DILKFVELYERADVHFIELKSYMHVG-YSQKRLKKEDMLQHDEILKLAKMLDENSS 285 (311)
T ss_dssp H-TTSS-SEEEEEEECTTTTC---CGGGTHHHHHHHTCSEEEEEECC-------------CCCCHHHHHHHHHHHHTSSS
T ss_pred H-HhcC-CEEEEEEEECCcch---hHHHHHHHHHHcCCCEEEEEeeEEcc-ccccccccccCCCHHHHHHHHHHHHHhcC
Confidence 4 5667 99999999999998 68999999998875 59999999984 233 257889999999999983367
Q ss_pred ceEEeccCCCcchhcccchhh
Q 017203 331 IRTTVRKQMGQDISGACGQLV 351 (375)
Q Consensus 331 i~v~vR~~~g~di~aaCGql~ 351 (375)
+.+. |......|..+.
T Consensus 286 ~~~~-----~~~~~~~~~l~~ 301 (311)
T 2z2u_A 286 YKLI-----DDSEDSRVALLQ 301 (311)
T ss_dssp EEEE-----EEEGGGTEEEEE
T ss_pred ceEE-----eccCcceEEEEe
Confidence 6554 333345565443
No 5
>1tv8_A MOAA, molybdenum cofactor biosynthesis protein A; TIM barrel, ligand binding protein; HET: SAM; 2.20A {Staphylococcus aureus} SCOP: c.1.28.3 PDB: 1tv7_A* 2fb3_A* 2fb2_A*
Probab=99.87 E-value=7.7e-21 Score=184.66 Aligned_cols=177 Identities=16% Similarity=0.245 Sum_probs=142.5
Q ss_pred eEEEEeecCCCCCcCccccCCC-----C---CcccCCCHHHHHHHHHHhhhhCCcceEEEEeCCCcccCHHHHHHHHHHh
Q 017203 117 STLCISSQVGCKMGCNFCATGT-----M---GFKSNLSSGEIVEQLVHASRLSNIRNVVFMGMGEPLNNYAALVEAVRIM 188 (375)
Q Consensus 117 ~tl~vssq~GCnl~C~fC~~~~-----~---~~~r~lt~~ei~~qi~~~~~~~~i~~Ivf~GmGEPlln~~~l~~~i~~l 188 (375)
..+.++.+.+||++|.||+.+. . .....++.+++...+..+.. .++..|.|+| ||||+++ .+.++++.+
T Consensus 14 ~~l~i~~T~~CNl~C~yC~~~~~~~~~~~~~~~~~~ls~e~i~~~i~~~~~-~g~~~i~~tG-GEPll~~-~l~~li~~~ 90 (340)
T 1tv8_A 14 RDLRLSVTDRCNFRCDYCMPKEVFGDDFVFLPKNELLTFDEMARIAKVYAE-LGVKKIRITG-GEPLMRR-DLDVLIAKL 90 (340)
T ss_dssp CEEEEECCSCCSCCCTTTSCTTTSSTTCCCCCGGGSCCHHHHHHHHHHHHH-TTCCEEEEES-SCGGGST-THHHHHHHH
T ss_pred CeEEEEeCCCcCCcCCCCCcCcccCCCcccCCccCCCCHHHHHHHHHHHHH-CCCCEEEEeC-CCccchh-hHHHHHHHH
Confidence 4678888899999999998865 1 22356899999888776654 4678999999 9999996 588999999
Q ss_pred hCCCCCCCCCeEEEEeCCchh--hHHHHhhhCCCceEEEEecCCCHHHHhhhcCCCCCCCHHHHHHHHHHHHHhcCCcEE
Q 017203 189 TGLPFQVSPKRITVSTVGIVH--AINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIF 266 (375)
Q Consensus 189 ~~~g~~i~~~~itisTnG~~~--~i~~l~~~~~~v~laiSL~a~~~~~r~~i~p~~~~~~~~~vl~~l~~~~~~~g~~v~ 266 (375)
++.+. ...+++.|||+.. .++.|.+.+ ...+.|||++.+++.++.+.+. ..++++++++++. +.+.|.++.
T Consensus 91 ~~~~~---~~~i~i~TNG~ll~~~~~~L~~~g-~~~v~iSld~~~~~~~~~i~~~--~~~~~~v~~~i~~-l~~~g~~v~ 163 (340)
T 1tv8_A 91 NQIDG---IEDIGLTTNGLLLKKHGQKLYDAG-LRRINVSLDAIDDTLFQSINNR--NIKATTILEQIDY-ATSIGLNVK 163 (340)
T ss_dssp TTCTT---CCEEEEEECSTTHHHHHHHHHHHT-CCEEEEECCCSSHHHHHHHHSS--CCCHHHHHHHHHH-HHHTTCEEE
T ss_pred HhCCC---CCeEEEEeCccchHHHHHHHHHCC-CCEEEEecCCCCHHHHHHhhCC--CCCHHHHHHHHHH-HHHCCCCEE
Confidence 87741 1379999999863 345666654 3579999999999999988642 2379999999954 567788999
Q ss_pred EEEEeeCCCCCCHHHHHHHHHHHhcCCCEEEEeecCCCC
Q 017203 267 IEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIG 305 (375)
Q Consensus 267 i~~vli~gvND~~e~~~~L~~~l~~~~~~vnLip~np~~ 305 (375)
+++++++|+|+ +++.+++++++++++.+.++.|.|.+
T Consensus 164 i~~vv~~g~n~--~ei~~~~~~~~~~g~~~~~i~~~p~~ 200 (340)
T 1tv8_A 164 VNVVIQKGIND--DQIIPMLEYFKDKHIEIRFIEFMDVG 200 (340)
T ss_dssp EEEEECTTTTG--GGHHHHHHHHHHTTCCEEEEECCCBC
T ss_pred EEEEEeCCCCH--HHHHHHHHHHHhcCCeEEEEEeeEcC
Confidence 99999999887 47999999999999888888888875
No 6
>3can_A Pyruvate-formate lyase-activating enzyme; structural genomics, pyruvate-formate lyase-activating enzym MCSG, APC20359.1; 1.80A {Bacteroides vulgatus atcc 8482}
Probab=99.86 E-value=9.5e-21 Score=167.85 Aligned_cols=159 Identities=19% Similarity=0.370 Sum_probs=129.4
Q ss_pred ceEEEEeCCCcccCHHHHHHHHHHhhCCCCCCCCCeEEEEeCCchh--hHHHHhhhCCCceEEEEecCCCHHHHhhhcCC
Q 017203 164 RNVVFMGMGEPLNNYAALVEAVRIMTGLPFQVSPKRITVSTVGIVH--AINKFHSDLPGLNLAVSLHAPVQDVRCQIMPA 241 (375)
Q Consensus 164 ~~Ivf~GmGEPlln~~~l~~~i~~l~~~g~~i~~~~itisTnG~~~--~i~~l~~~~~~v~laiSL~a~~~~~r~~i~p~ 241 (375)
.+|+|+| ||||++++.+.++++.+++.| .+++|+|||+++ .+++|.+. ...+.||+|+++++.++++.+.
T Consensus 5 ~~v~~tG-GEPll~~~~~~~l~~~~~~~g-----~~~~l~TNG~l~~~~~~~l~~~--~d~v~isld~~~~~~~~~~~g~ 76 (182)
T 3can_A 5 GGVTFCG-GEPLLHPEFLIDILKRCGQQG-----IHRAVDTTLLARKETVDEVMRN--CELLLIDLKSMDSTVHQTFCDV 76 (182)
T ss_dssp CCEEECS-STGGGSHHHHHHHHHHHHHTT-----CCEEEECTTCCCHHHHHHHHHT--CSEEEEECCCSCHHHHHHHHSS
T ss_pred CEEEEEc-ccccCCHHHHHHHHHHHHHCC-----CcEEEECCCCCCHHHHHHHHhh--CCEEEEECCCCCHHHHHHHhCC
Confidence 6899999 999999876679999999877 579999999864 34566654 2458999999999999998753
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCcEEEEEEeeCCCCCCHHHHHHHHHHHhcC-CC--EEEEeecCCCCCC-----------
Q 017203 242 ARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETF-QV--VVNLIPFNPIGSV----------- 307 (375)
Q Consensus 242 ~~~~~~~~vl~~l~~~~~~~g~~v~i~~vli~gvND~~e~~~~L~~~l~~~-~~--~vnLip~np~~~~----------- 307 (375)
+++.++++++. +.+.|.++.+++++++++||+.+++.+++++++++ ++ .++++||+|.+..
T Consensus 77 ----~~~~i~~~i~~-l~~~g~~v~i~~~v~~~~n~n~~~~~~~~~~~~~~~g~~~~~~l~~~~p~g~~~~~~l~~~y~~ 151 (182)
T 3can_A 77 ----PNELILKNIRR-VAEADFPYYIRIPLIEGVNADEKNIKLSAEFLASLPRHPEIINLLPYHDIGKGKHAKLGSIYNP 151 (182)
T ss_dssp ----CSHHHHHHHHH-HHHTTCCEEEEEEECBTTTCSHHHHHHHHHHHHHSSSCCSEEEEEECCC---------------
T ss_pred ----CHHHHHHHHHH-HHhCCCeEEEEEEEECCCCCCHHHHHHHHHHHHhCcCccceEEEecCcccCHHHHHHhCCcCcc
Confidence 45999999965 45678999999999999999999999999999998 74 6999999997532
Q ss_pred CCCCCCcHHH--HHHHHHHHHhcCCceEEec
Q 017203 308 SQFRTSSDDK--VSSFQKILRGSYNIRTTVR 336 (375)
Q Consensus 308 ~~~~~~s~e~--i~~f~~~l~~~~Gi~v~vR 336 (375)
.++++|+.++ ++++.++++ ++|+.+++.
T Consensus 152 ~~~~~~~~e~~~l~~~~~~~~-~~g~~~~i~ 181 (182)
T 3can_A 152 KGYKMQTPSEEVQQQCIQILT-DYGLKATIG 181 (182)
T ss_dssp ---CCBCCCHHHHHHHHHHHH-HTTCCEEEC
T ss_pred cCCCCCCHHHHHHHHHHHHHH-HcCCceEeC
Confidence 1245677777 999999999 799998873
No 7
>2a5h_A L-lysine 2,3-aminomutase; radical SAM, four-iron-four-sulfur cluster, 4Fe4S, FS4, SAM, adenosylmethionine, alpha-beta channel; HET: SAM LYS PLP; 2.10A {Clostridium subterminale}
Probab=99.83 E-value=2.8e-19 Score=178.65 Aligned_cols=203 Identities=16% Similarity=0.143 Sum_probs=146.7
Q ss_pred eEEEEeecCCCCCcCccccCCCCCc--ccCCCHHHHHHHHHHhhhhCCcceEEEEeCCCcccCHH-HHHHHHHHhhCC-C
Q 017203 117 STLCISSQVGCKMGCNFCATGTMGF--KSNLSSGEIVEQLVHASRLSNIRNVVFMGMGEPLNNYA-ALVEAVRIMTGL-P 192 (375)
Q Consensus 117 ~tl~vssq~GCnl~C~fC~~~~~~~--~r~lt~~ei~~qi~~~~~~~~i~~Ivf~GmGEPlln~~-~l~~~i~~l~~~-g 192 (375)
.++.++.+.+||++|.||+.+.... ...++.+++.+.+..+....++..|+|+| ||||++++ .+.++++.+++. +
T Consensus 115 ~~v~l~vT~~Cnl~C~yC~~~~~~~~~~~~ls~eei~~~i~~i~~~~gi~~V~ltG-GEPll~~d~~L~~il~~l~~~~~ 193 (416)
T 2a5h_A 115 DRVLLLITDMCSMYCRHCTRRRFAGQSDDSMPMERIDKAIDYIRNTPQVRDVLLSG-GDALLVSDETLEYIIAKLREIPH 193 (416)
T ss_dssp SEEEEEEESCCSSCCTTCTTTTTTTSSSSBCCHHHHHHHHHHHHTCTTCCEEEEEE-SCTTSSCHHHHHHHHHHHHTSTT
T ss_pred CEEEEecCCCccccCcCCCCcccCCCccCCCCHHHHHHHHHHHHhcCCCcEEEEEC-CCCCCCCHHHHHHHHHHHHhcCC
Confidence 3556666799999999999875322 24689999988777665535688999999 99999975 589999999876 3
Q ss_pred CCCCCCeEEEEeCCc-h------h-hHHHHhhhCCCceEEEEecCCCHHHHhhhcCCCCCCCHHHHHHHHHHHHHhcCCc
Q 017203 193 FQVSPKRITVSTVGI-V------H-AINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQK 264 (375)
Q Consensus 193 ~~i~~~~itisTnG~-~------~-~i~~l~~~~~~v~laiSL~a~~~~~r~~i~p~~~~~~~~~vl~~l~~~~~~~g~~ 264 (375)
+ ..+++.|||. . + .++.|.+. ..+.||+|+.++ +++ . ++++++++ .+++.|..
T Consensus 194 v----~~i~i~Tng~~~~p~~it~e~l~~L~~~---~~v~Isl~~~~~---~ei-------~-~~v~~ai~-~L~~aGi~ 254 (416)
T 2a5h_A 194 V----EIVRIGSRTPVVLPQRITPELVNMLKKY---HPVWLNTHFNHP---NEI-------T-EESTRACQ-LLADAGVP 254 (416)
T ss_dssp C----CEEEEECSHHHHCGGGCCHHHHHHHGGG---CSEEEEECCCSG---GGC-------C-HHHHHHHH-HHHHTTCC
T ss_pred c----cEEEEEecccccccccCCHHHHHHHHhc---CcEEEEEecCCH---HHH-------h-HHHHHHHH-HHHHcCCE
Confidence 2 4799999992 1 2 23444443 468899998765 234 2 88999995 45678999
Q ss_pred EEEEEEeeCCCCCCHHHHHHHHHHHhcCCCEEEEeecCCCCCCCCCCCCcHHHHHHHHHHHHhc-CCc--eEEeccCC
Q 017203 265 IFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGS-YNI--RTTVRKQM 339 (375)
Q Consensus 265 v~i~~vli~gvND~~e~~~~L~~~l~~~~~~vnLip~np~~~~~~~~~~s~e~i~~f~~~l~~~-~Gi--~v~vR~~~ 339 (375)
+.+++++++|+||+.+++.++++++..+++....+.+.|.+++..+...+..+..++.+.++.. .|+ ...++...
T Consensus 255 v~i~~vll~GvNd~~e~l~~l~~~l~~lgv~~~~i~~~~~~~g~~~~~~~~~~~~eil~~l~~~~~G~~~p~~v~~~p 332 (416)
T 2a5h_A 255 LGNQSVLLRGVNDCVHVMKELVNKLVKIRVRPYYIYQCDLSLGLEHFRTPVSKGIEIIEGLRGHTSGYCVPTFVVDAP 332 (416)
T ss_dssp EEEEEECCTTTTCSHHHHHHHHHHHHHTTEEEEEEECCCCBTTCGGGCCCHHHHHHHHHTTBTTBCGGGCCEEEEEET
T ss_pred EEEEEEEECCCCCCHHHHHHHHHHHHHcCCceEEEeecCCCCCcccccCCcccHHHHHHHHHHHCCCCCCceEEEECC
Confidence 9999999999999999999999999999987666666664344443334555666666666521 243 34555443
No 8
>3iix_A Biotin synthetase, putative; adoMet radical, SAM radical, adoMet cleavage, Fe4S4 cluster, HYDE, hydrogenase, maturation, beta barrel; HET: OTY CSO 5AD CPS; 1.25A {Thermotoga maritima} PDB: 3ciw_A* 3iiz_A* 3cix_A*
Probab=99.79 E-value=7.2e-18 Score=163.89 Aligned_cols=190 Identities=16% Similarity=0.191 Sum_probs=146.8
Q ss_pred EeecCCCCCcCccccCCCCC--c-ccCCCHHHHHHHHHHhhhhCCcceEEEEeCCC-cccCHHHHHHHHHHhhCCCCCCC
Q 017203 121 ISSQVGCKMGCNFCATGTMG--F-KSNLSSGEIVEQLVHASRLSNIRNVVFMGMGE-PLNNYAALVEAVRIMTGLPFQVS 196 (375)
Q Consensus 121 vssq~GCnl~C~fC~~~~~~--~-~r~lt~~ei~~qi~~~~~~~~i~~Ivf~GmGE-Plln~~~l~~~i~~l~~~g~~i~ 196 (375)
|+.+.|||++|.||+..... . ...++.++|++++..... .++..|+|+| || |+++++.+.++++.+++.+
T Consensus 57 i~~t~~C~~~C~fC~~~~~~~~~~~~~ls~eei~~~i~~~~~-~g~~~i~~~g-Ge~p~~~~~~~~~li~~i~~~~---- 130 (348)
T 3iix_A 57 IEFSNVCRKNCLYCGLRRDNKNLKRYRMTPEEIVERARLAVQ-FGAKTIVLQS-GEDPYXMPDVISDIVKEIKKMG---- 130 (348)
T ss_dssp EEEECCCSCCCTTCTTCTTCCSSCCCBCCHHHHHHHHHHHHH-TTCSEEEEEE-SCCGGGTTHHHHHHHHHHHTTS----
T ss_pred eEecCCcCCcCccCCCCCCCCCcCceeCCHHHHHHHHHHHHH-CCCCEEEEEe-CCCCCccHHHHHHHHHHHHhcC----
Confidence 44569999999999865432 1 124899999999988665 4688999999 99 9998889999999999875
Q ss_pred CCeEEEEeCCch-h-hHHHHhhhCCCceEEEEecCCCHHHHhhhcCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEEeeCC
Q 017203 197 PKRITVSTVGIV-H-AINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDG 274 (375)
Q Consensus 197 ~~~itisTnG~~-~-~i~~l~~~~~~v~laiSL~a~~~~~r~~i~p~~~~~~~~~vl~~l~~~~~~~g~~v~i~~vli~g 274 (375)
.+++++ +|.. + .+++|.+.+. ..+.+|+++.+++.|+.+.|. .++++++++++ .+++.|.. +.+.++.|
T Consensus 131 -~~i~~s-~g~l~~e~l~~L~~ag~-~~v~i~let~~~~~~~~i~~~---~~~~~~~~~i~-~~~~~Gi~--v~~~~i~G 201 (348)
T 3iix_A 131 -VAVTLS-LGEWPREYYEKWKEAGA-DRYLLRHETANPVLHRKLRPD---TSFENRLNCLL-TLKELGYE--TGAGSMVG 201 (348)
T ss_dssp -CEEEEE-CCCCCHHHHHHHHHHTC-CEEECCCBCSCHHHHHHHSTT---SCHHHHHHHHH-HHHHTTCE--EEECBEES
T ss_pred -ceEEEe-cCCCCHHHHHHHHHhCC-CEEeeeeeeCCHHHHHHhCCC---cCHHHHHHHHH-HHHHhCCe--eccceEEe
Confidence 456644 4543 3 4677777653 568899999999999999764 38999999995 56677764 56667778
Q ss_pred C-CCCHHHHHHHHHHHhcCCCE-EEEeecCCCCCCCC---CCCCcHHHHHHHHHHHH
Q 017203 275 V-NDEEQHAHQLGKLLETFQVV-VNLIPFNPIGSVSQ---FRTSSDDKVSSFQKILR 326 (375)
Q Consensus 275 v-ND~~e~~~~L~~~l~~~~~~-vnLip~np~~~~~~---~~~~s~e~i~~f~~~l~ 326 (375)
+ +++.+++.+++++++++++. +.+.||+|. ++++ .++++.+++.+....++
T Consensus 202 ~p~et~e~~~~~~~~l~~l~~~~i~i~~~~p~-~gt~l~~~~~~~~~e~~~~~a~~R 257 (348)
T 3iix_A 202 LPGQTIDDLVDDLLFLKEHDFDMVGIGPFIPH-PDTPLANEKKGDFTLTLKMVALTR 257 (348)
T ss_dssp CTTCCHHHHHHHHHHHHHHTCSEECCEECCCC-TTSTTTTSCCCCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHhcCCCEEeeeeeecC-CCCCcccCCCCCHHHHHHHHHHHH
Confidence 7 89999999999999998864 888899987 4444 45667777777666655
No 9
>3t7v_A Methylornithine synthase PYLB; TIM-barrel fold, mutase, [4Fe-4S]-cluster, SAM, lysine, transferase; HET: SAM MD0; 1.50A {Methanosarcina barkeri}
Probab=99.79 E-value=2.9e-19 Score=174.36 Aligned_cols=244 Identities=17% Similarity=0.149 Sum_probs=167.8
Q ss_pred CCCCCCCC-HHHHHHHHhcCCCCCcccceEEeCCCCCeEEEEEEecC-------CCeEEEEEeeecCCCCCCCCCCCCCC
Q 017203 43 WDEFPSLP-SAAYSLLRSKFKPLTSTLHSVVDSSDDVTTKLLVKLQN-------GGFVEAVIMRYDSSLGKYNGKPRPGG 114 (375)
Q Consensus 43 ~~~~~~l~-~~~r~~l~~~~~~~~~~~~~~~~s~dg~t~k~l~~~~d-------g~~ve~v~i~~~~~~~~~~g~~~~~~ 114 (375)
|++|+|++ +++++++.+...+..........+.|+...+.|+++.| |..|.
T Consensus 2 ~~~m~~~~~~~i~~k~~~~~~l~~~e~~~l~~~~~~~~~~~L~~~A~~~r~~~~g~~v~--------------------- 60 (350)
T 3t7v_A 2 IQKMALDEFDSLGDKVIEGYQLTDNDLRTLLSLESKEGLERLYSAARKVRDHYFGNRVF--------------------- 60 (350)
T ss_dssp ----------CHHHHHHTTCCCCHHHHHHHHTCCSHHHHHHHHHHHHHHHHHHHTTEEE---------------------
T ss_pred hhhHhHHHHHHHHHHHHcCCCCCHHHHHHHhcCCChhHHHHHHHHHHHHHHHHCCCEEE---------------------
Confidence 68899998 88888888777776665555544444325566776665 32221
Q ss_pred CceEEEEeecCCCCCcCccccCCCCC-c-ccCCCHHHHHHHHHHhhhhCCcceEEEEeCCC-cccC--HHHHHHHHHHhh
Q 017203 115 PRSTLCISSQVGCKMGCNFCATGTMG-F-KSNLSSGEIVEQLVHASRLSNIRNVVFMGMGE-PLNN--YAALVEAVRIMT 189 (375)
Q Consensus 115 ~r~tl~vssq~GCnl~C~fC~~~~~~-~-~r~lt~~ei~~qi~~~~~~~~i~~Ivf~GmGE-Plln--~~~l~~~i~~l~ 189 (375)
+...|..+.||+++|.||+..... . ...++++||++++..... .++..|+|+| || |+.+ ++.+.++++.++
T Consensus 61 --~~~~i~~t~~C~~~C~fC~~~~~~~~~~~~ls~eei~~~~~~~~~-~G~~~i~l~g-Ge~p~~~~~~~~~~~l~~~ik 136 (350)
T 3t7v_A 61 --LNCFIYFSTYCKNQCSFCYYNCRNEINRYRLTMEEIKETCKTLKG-AGFHMVDLTM-GEDPYYYEDPNRFVELVQIVK 136 (350)
T ss_dssp --EEEEEEEECCCCCCCTTCTTCTTSCCCCCBCCHHHHHHHHHHHTT-SCCSEEEEEE-CCCHHHHHSTHHHHHHHHHHH
T ss_pred --EEEeeecCCCcCCCCCcCCCcCcCCCCceeCCHHHHHHHHHHHHH-CCCCEEEEee-CCCCccccCHHHHHHHHHHHH
Confidence 222345569999999999875432 1 224899999999988765 4689999999 99 8864 678999999998
Q ss_pred CC-CCCCCCCeEEEEeCCch-h-hHHHHhhhCCCceEEEEecCCCHHHHhhhcCCCCCCCHHHHHHHHHHHHHhcCCcEE
Q 017203 190 GL-PFQVSPKRITVSTVGIV-H-AINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIF 266 (375)
Q Consensus 190 ~~-g~~i~~~~itisTnG~~-~-~i~~l~~~~~~v~laiSL~a~~~~~r~~i~p~~~~~~~~~vl~~l~~~~~~~g~~v~ 266 (375)
+. + .+++++ .|.. + .+++|.+.+. ..+.+++++.+++.|+++.| +.+++++++++ +.+++.|.++.
T Consensus 137 ~~~~-----i~i~~s-~g~~~~e~l~~L~~aG~-~~i~i~lEt~~~~~~~~i~~---~~~~~~~l~~i-~~a~~~Gi~v~ 205 (350)
T 3t7v_A 137 EELG-----LPIMIS-PGLMDNATLLKAREKGA-NFLALYQETYDTELYRKLRV---GQSFDGRVNAR-RFAKQQGYCVE 205 (350)
T ss_dssp HHHC-----SCEEEE-CSSCCHHHHHHHHHTTE-EEEECCCBCSCHHHHHHHST---TCCHHHHHHHH-HHHHHHTCEEE
T ss_pred hhcC-----ceEEEe-CCCCCHHHHHHHHHcCC-CEEEEeeecCCHHHHHHhCC---CCCHHHHHHHH-HHHHHcCCeEc
Confidence 65 5 346654 5543 2 4677877652 35778999999999999976 46899999999 45678888754
Q ss_pred EEEEeeCCCCCCHHHHHHHHHHHhcCCCE-EEEeecCCCCCCCCC---CCCcHHHHHHHHHHH
Q 017203 267 IEYIMLDGVNDEEQHAHQLGKLLETFQVV-VNLIPFNPIGSVSQF---RTSSDDKVSSFQKIL 325 (375)
Q Consensus 267 i~~vli~gvND~~e~~~~L~~~l~~~~~~-vnLip~np~~~~~~~---~~~s~e~i~~f~~~l 325 (375)
..++-|++++.+++.+.+++++++++. +.+.+|+|. +++++ ++++.++..+...++
T Consensus 206 --~~~i~Glget~e~~~~~l~~l~~l~~~~v~~~~f~p~-~gT~l~~~~~~~~~e~l~~ia~~ 265 (350)
T 3t7v_A 206 --DGILTGVGNDIESTILSLRGMSTNDPDMVRVMTFLPQ-EGTPLEGFRDKSNLSELKIISVL 265 (350)
T ss_dssp --EEEEESSSCCHHHHHHHHHHHHHTCCSEEEEEECCCC-TTSTTTTCCCCCCCCHHHHHHHH
T ss_pred --cceEeecCCCHHHHHHHHHHHHhCCCCEEEecceeeC-CCCcCccCCCCChHHHHHHHHHH
Confidence 456668899999999999999999875 899999997 45543 334444444444433
No 10
>1r30_A Biotin synthase; SAM radical protein, TIM barrel, FES cluster, transferase; HET: SAM DTB; 3.40A {Escherichia coli} SCOP: c.1.28.1
Probab=99.67 E-value=1.1e-14 Score=142.93 Aligned_cols=188 Identities=10% Similarity=0.114 Sum_probs=142.4
Q ss_pred ecCCCCCcCccccCCCCC-----cccCCCHHHHHHHHHHhhhhCCcceEEEEeCC-Ccc-cCHHHHHHHHHHhhCCCCCC
Q 017203 123 SQVGCKMGCNFCATGTMG-----FKSNLSSGEIVEQLVHASRLSNIRNVVFMGMG-EPL-NNYAALVEAVRIMTGLPFQV 195 (375)
Q Consensus 123 sq~GCnl~C~fC~~~~~~-----~~r~lt~~ei~~qi~~~~~~~~i~~Ivf~GmG-EPl-ln~~~l~~~i~~l~~~g~~i 195 (375)
++.|||++|.||+.+... ..+.++.+||++.+..... .++..|.|.|.| ||. +.++.+.++++.+++.|
T Consensus 72 ~t~~C~~~C~yC~~~~~~~~~~~~~~~~s~eei~~~~~~~~~-~g~~~i~~~gg~~~p~~~~~~~l~~ll~~ik~~g--- 147 (369)
T 1r30_A 72 KTGACPEDCKYCPQSSRYKTGLEAERLMEVEQVLESARKAKA-AGSTRFCMGAAWKNPHERDMPYLEQMVQGVKAMG--- 147 (369)
T ss_dssp ECSCBSSCCSSCSCBTTSCTTCCCCCCCCHHHHHHHHHHHHH-TTCSEEEEEECCSSCCTTTHHHHHHHHHHHHHTT---
T ss_pred ECCCCcccCccCCCCCcCCCCCcccccCCHHHHHHHHHHHHH-cCCcEEEEEeCCCCCCcCCHHHHHHHHHHHHHcC---
Confidence 359999999999986531 1345899999998887654 367889998833 455 46788999999999776
Q ss_pred CCCeEEEEeCCchh--hHHHHhhhCCCceEEEEecCCCHHHHhhhcCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEEeeC
Q 017203 196 SPKRITVSTVGIVH--AINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLD 273 (375)
Q Consensus 196 ~~~~itisTnG~~~--~i~~l~~~~~~v~laiSL~a~~~~~r~~i~p~~~~~~~~~vl~~l~~~~~~~g~~v~i~~vli~ 273 (375)
..+++ |||++. .+++|.+.+. ..+.+++++ +++.++.+.+ ..++++++++++. +++.|.. +...++.
T Consensus 148 --~~i~~-t~G~l~~e~l~~L~~aGv-d~v~i~les-~~e~~~~i~~---~~~~~~~l~~i~~-a~~~Gi~--v~~~~I~ 216 (369)
T 1r30_A 148 --LEACM-TLGTLSESQAQRLANAGL-DYYNHNLDT-SPEFYGNIIT---TRTYQERLDTLEK-VRDAGIK--VCSGGIV 216 (369)
T ss_dssp --SEEEE-ECSSCCHHHHHHHHHHCC-CEEECCCBS-CHHHHHHHCC---SSCHHHHHHHHHH-HHHHHCE--EECCEEE
T ss_pred --CeEEE-ecCCCCHHHHHHHHHCCC-CEEeecCcC-CHHHHHHhCC---CCCHHHHHHHHHH-HHHcCCe--eeeeeEe
Confidence 34664 899753 4677777752 468899999 8999999864 4689999999965 5566664 4566788
Q ss_pred CCCCCHHHHHHHHHHHhcCC--C-EEEEeecCCCCCCCC---CCCCcHHHHHHHHHHHH
Q 017203 274 GVNDEEQHAHQLGKLLETFQ--V-VVNLIPFNPIGSVSQ---FRTSSDDKVSSFQKILR 326 (375)
Q Consensus 274 gvND~~e~~~~L~~~l~~~~--~-~vnLip~np~~~~~~---~~~~s~e~i~~f~~~l~ 326 (375)
|++++.+++.+++++++.++ + .+.+.+|.|. ++++ .++++.+++.++.+.++
T Consensus 217 Gl~et~ed~~~~l~~l~~l~~~~~~i~~~~l~p~-~gT~l~~~~~~~~~~~~~~~~~~r 274 (369)
T 1r30_A 217 GLGETVKDRAGLLLQLANLPTPPESVPINMLVKV-KGTPLADNDDVDAFDFIRTIAVAR 274 (369)
T ss_dssp CSSCCHHHHHHHHHHHHSSSSCCSEEEEEECCCC-TTSTTSSCCCCCHHHHHHHHHHHH
T ss_pred eCCCCHHHHHHHHHHHHhhcCCCCEEEeeeeeec-CCCcCCCCCCCCHHHHHHHHHHHH
Confidence 99999999999999999986 3 5777778776 3443 35677888777766654
No 11
>2qgq_A Protein TM_1862; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: CXS; 2.00A {Thermotoga maritima MSB8}
Probab=99.59 E-value=6.7e-14 Score=133.95 Aligned_cols=183 Identities=15% Similarity=0.213 Sum_probs=120.8
Q ss_pred ceEEEEeecCCCCCcCccccCCCC-CcccCCCHHHHHHHHHHhhhhCCcceEEEEeCCCcccC------HHHHHHHHHHh
Q 017203 116 RSTLCISSQVGCKMGCNFCATGTM-GFKSNLSSGEIVEQLVHASRLSNIRNVVFMGMGEPLNN------YAALVEAVRIM 188 (375)
Q Consensus 116 r~tl~vssq~GCnl~C~fC~~~~~-~~~r~lt~~ei~~qi~~~~~~~~i~~Ivf~GmGEPlln------~~~l~~~i~~l 188 (375)
+..+++.++.|||++|.||..+.. +..+..++++|++++..... .++..|+|+| ++++.. .+.+.++++.+
T Consensus 3 ~~~~~v~is~GC~~~C~fC~~~~~~g~~r~r~~e~i~~ei~~l~~-~G~~ei~l~g-~~~~~yG~~~~~~~~l~~Ll~~l 80 (304)
T 2qgq_A 3 RPYAYVKISDGCDRGCTFCSIPSFKGSLRSRSIEDITREVEDLLK-EGKKEIILVA-QDTTSYGIDLYRKQALPDLLRRL 80 (304)
T ss_dssp CSEEEEESBCCC-------------CCCCBCCHHHHHHHHHHHHH-TTCCEEEEEC-TTGGGTTHHHHSSCCHHHHHHHH
T ss_pred CEEEEEEECCCCCCcCccCCccccCCCceeeCHHHHHHHHHHHHH-CCCcEEEEEe-EcccccCCCCCcHHHHHHHHHHH
Confidence 467888889999999999998653 34577899999999988765 3678999998 665542 24578888888
Q ss_pred hCC-CCCCCCCeEEE-EeCCc--hh-hHHHHhhhCC-CceEEEEecCCCHHHHhhhcCCCCCCCHHHHHHHHHHHHHhcC
Q 017203 189 TGL-PFQVSPKRITV-STVGI--VH-AINKFHSDLP-GLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQ 262 (375)
Q Consensus 189 ~~~-g~~i~~~~iti-sTnG~--~~-~i~~l~~~~~-~v~laiSL~a~~~~~r~~i~p~~~~~~~~~vl~~l~~~~~~~g 262 (375)
++. |+ ..+.+ +||+. .+ .++.|++... ...+.+++++.+++.++.+ ++.++.++++++++.+ ++..
T Consensus 81 ~~~~gi----~~ir~~~~~p~~l~~e~l~~l~~~g~~~~~l~i~lqs~s~~vl~~m---~r~~t~e~~~~~i~~l-~~~~ 152 (304)
T 2qgq_A 81 NSLNGE----FWIRVMYLHPDHLTEEIISAMLELDKVVKYFDVPVQHGSDKILKLM---GRTKSSEELKKMLSSI-RERF 152 (304)
T ss_dssp HTSSSS----CEEEECCCCGGGCCHHHHHHHHHCTTBCCEEECCCBCSCHHHHHHT---TCCSCHHHHHHHHHHH-HHHC
T ss_pred HhcCCC----cEEEEeeeecccCCHHHHHHHHhCCCCccEEEEecccCCHHHHHHh---CCCCCHHHHHHHHHHH-HhhC
Confidence 875 42 24555 35653 23 3556665431 2468899999999998876 5678899999999654 4422
Q ss_pred CcEEEEEEeeCCC-CCCHHHHHHHHHHHhcCCC-EEEEeecCCCCCCCC
Q 017203 263 QKIFIEYIMLDGV-NDEEQHAHQLGKLLETFQV-VVNLIPFNPIGSVSQ 309 (375)
Q Consensus 263 ~~v~i~~vli~gv-ND~~e~~~~L~~~l~~~~~-~vnLip~np~~~~~~ 309 (375)
..+.+.+.+|-|+ +++.+++.+++++++++++ .+++.+|.|. ++++
T Consensus 153 ~gi~i~~~~IvG~PgEt~ed~~~t~~~l~~l~~~~v~~~~~~p~-pgT~ 200 (304)
T 2qgq_A 153 PDAVLRTSIIVGFPGETEEDFEELKQFVEEIQFDKLGAFVYSDE-EGTV 200 (304)
T ss_dssp TTCEEEEEEEECCTTCCHHHHHHHHHHHHHHCCSEEEEEECCC------
T ss_pred CCCEEEEEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEEEeeCC-CCCh
Confidence 2345555566565 7899999999999999986 5889999987 4443
No 12
>1olt_A Oxygen-independent coproporphyrinogen III oxidase; heme biosynthesis, decarboxylase, radical SAM enzyme, 4Fe- 4 cluster; HET: SAM; 2.07A {Escherichia coli} SCOP: c.1.28.2
Probab=99.35 E-value=7.6e-11 Score=118.91 Aligned_cols=206 Identities=13% Similarity=0.190 Sum_probs=140.4
Q ss_pred ceEEEEeecCCCCCcCccccCCCCC-cc---cCCCHHHHHHHHHHhhhh---CCcceEEEEeCCCccc-CHHHHHHHHHH
Q 017203 116 RSTLCISSQVGCKMGCNFCATGTMG-FK---SNLSSGEIVEQLVHASRL---SNIRNVVFMGMGEPLN-NYAALVEAVRI 187 (375)
Q Consensus 116 r~tl~vssq~GCnl~C~fC~~~~~~-~~---r~lt~~ei~~qi~~~~~~---~~i~~Ivf~GmGEPll-n~~~l~~~i~~ 187 (375)
..+++|.. .+|+.+|.||...... .. +....+.+++++...... ..+..|.|.| |+|++ +.+.+.++++.
T Consensus 52 ~~~lYihI-pfC~~~C~yC~~~~~~~~~~~~~~~~~~~l~~Ei~~~~~~~~~~~i~~i~fgG-Gtpt~l~~~~l~~ll~~ 129 (457)
T 1olt_A 52 PLSLYVHI-PFCHKLCYFCGCNKIVTRQQHKADQYLDALEQEIVHRAPLFAGRHVSQLHWGG-GTPTYLNKAQISRLMKL 129 (457)
T ss_dssp CEEEEEEE-CEESSCCTTCCSSCEECSCTHHHHHHHHHHHHHHHHHGGGGTTCCEEEEEEEE-SCGGGSCHHHHHHHHHH
T ss_pred ceEEEEEc-CCCCCCCCCCCCceeccCCcchHHHHHHHHHHHHHHHHHhcCCCceEEEEEeC-CCcccCCHHHHHHHHHH
Confidence 35555555 5799999999876431 11 112356777777765432 2467899999 99985 67789999998
Q ss_pred hhCCCCCCC-CCeEEEEeCCch--h-hHHHHhhhCCCceEEEEecCCCHHHHhhhcCCCCCCCHHHHHHHHHHHHHhcCC
Q 017203 188 MTGLPFQVS-PKRITVSTVGIV--H-AINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQ 263 (375)
Q Consensus 188 l~~~g~~i~-~~~itisTnG~~--~-~i~~l~~~~~~v~laiSL~a~~~~~r~~i~p~~~~~~~~~vl~~l~~~~~~~g~ 263 (375)
+++. +++. ...++++||.-. + .++.|.+.+ ...|.+++.+.+++..+.+ ++..+.++++++++ .+++.|.
T Consensus 130 i~~~-~~~~~~~eitie~~p~~l~~e~l~~L~~~G-~~rislGvQS~~~~~l~~i---~R~~~~~~~~~ai~-~~r~~G~ 203 (457)
T 1olt_A 130 LREN-FQFNADAEISIEVDPREIELDVLDHLRAEG-FNRLSMGVQDFNKEVQRLV---NREQDEEFIFALLN-HAREIGF 203 (457)
T ss_dssp HHHH-SCEEEEEEEEEEECSSSCCTHHHHHHHHTT-CCEEEEEEECCCHHHHHHH---TCCCCHHHHHHHHH-HHHHTTC
T ss_pred HHHh-CCCCCCcEEEEEEccCcCCHHHHHHHHHcC-CCEEEEeeccCCHHHHHHh---CCCCCHHHHHHHHH-HHHHcCC
Confidence 8763 1111 146889998842 2 456666655 3578999999999999888 55678999999995 5567777
Q ss_pred c-EEEEEEe-eCCCCCCHHHHHHHHHHHhcCCC-EEEEeecCCCCCCC--------CCCCCcHHH----HHHHHHHHHhc
Q 017203 264 K-IFIEYIM-LDGVNDEEQHAHQLGKLLETFQV-VVNLIPFNPIGSVS--------QFRTSSDDK----VSSFQKILRGS 328 (375)
Q Consensus 264 ~-v~i~~vl-i~gvND~~e~~~~L~~~l~~~~~-~vnLip~np~~~~~--------~~~~~s~e~----i~~f~~~l~~~ 328 (375)
. +.+..++ +| +++.+++.+.++++..+++ ++.+.+|.|. ++. ++..|+.++ +..+.+.|. +
T Consensus 204 ~~v~~dlI~GlP--get~e~~~~tl~~~~~l~~~~i~~y~l~~~-p~t~~~~~~~~~~~lp~~~~~~~~~~~~~~~L~-~ 279 (457)
T 1olt_A 204 TSTNIDLIYGLP--KQTPESFAFTLKRVAELNPDRLSVFNYAHL-PTIFAAQRKIKDADLPSPQQKLDILQETIAFLT-Q 279 (457)
T ss_dssp CSCEEEEEESCT--TCCHHHHHHHHHHHHHHCCSEEEEEECCCC-TTTSGGGGGSCGGGSCCHHHHHHHHHHHHHHHH-H
T ss_pred CcEEEEEEcCCC--CCCHHHHHHHHHHHHhcCcCEEEeecCcCC-cCchhHhhccccCCCcCHHHHHHHHHHHHHHHH-H
Confidence 6 6655433 34 5788999999999999886 4888888755 232 223455443 344455666 5
Q ss_pred CCceE
Q 017203 329 YNIRT 333 (375)
Q Consensus 329 ~Gi~v 333 (375)
.|+..
T Consensus 280 ~Gy~~ 284 (457)
T 1olt_A 280 SGYQF 284 (457)
T ss_dssp TTCEE
T ss_pred CCCeE
Confidence 78753
No 13
>4fhd_A Spore photoproduct lyase; partial TIM-barrel, DNA repair, damaged DNA; HET: EEM 0TT; 2.00A {Geobacillus thermodenitrificans} PDB: 4fhc_A* 4fhg_A* 4fhe_A* 4fhf_A*
Probab=98.19 E-value=1.1e-05 Score=78.48 Aligned_cols=158 Identities=14% Similarity=0.151 Sum_probs=102.3
Q ss_pred EeecCCCCCcCccccCCC-CCc----ccCCCHHHHHHHHHHh-hhh-CCcceEEEEeCCCcccCHH----HHHHHHHHhh
Q 017203 121 ISSQVGCKMGCNFCATGT-MGF----KSNLSSGEIVEQLVHA-SRL-SNIRNVVFMGMGEPLNNYA----ALVEAVRIMT 189 (375)
Q Consensus 121 vssq~GCnl~C~fC~~~~-~~~----~r~lt~~ei~~qi~~~-~~~-~~i~~Ivf~GmGEPlln~~----~l~~~i~~l~ 189 (375)
+..-.||.++|.||+... .+. .-....+|+++++... .+. .....|.+.++.+|+ ..+ ...++++.+.
T Consensus 111 ln~y~GC~~~C~YCYl~~~~~~~~~I~v~vN~~eiL~~l~~~l~~~~~~~~~i~~g~~TDpy-p~E~~~~ltr~~le~l~ 189 (368)
T 4fhd_A 111 IPLATGCMGHCHYCYLQTTLGSKPYIRVYVNLDDIFAQAQKYINERAPEITRFEAACTSDIV-GIDHLTHSLKKAIEFIG 189 (368)
T ss_dssp CCSEEBCSCCCTTCTHHHHTTTCCSEEEECCHHHHHHHHHHHHHHHTTSCEEEESCSSBCHH-HHHTTTCHHHHHHHHHH
T ss_pred eCCccCCCCCCceEeccccCCCCCeEEEecCHHHHHHHHHHHHhhcCCCceEEEEEcCCCcc-hhhHHHhHHHHHHHHHH
Confidence 344589999999998631 121 1245689999987653 221 233456666677886 334 3556777776
Q ss_pred CCCCCCCCCeEEEEeCCchhh-HHHHhhhCCCceEEEEecCCCHHHHhhhcCCCCCCCHHHHHHHHHHHHHhcCCcEEEE
Q 017203 190 GLPFQVSPKRITVSTVGIVHA-INKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIE 268 (375)
Q Consensus 190 ~~g~~i~~~~itisTnG~~~~-i~~l~~~~~~v~laiSL~a~~~~~r~~i~p~~~~~~~~~vl~~l~~~~~~~g~~v~i~ 268 (375)
+.+ ...++|.|=+.... +..+... ..+.+++||.. ++..+.+-|.. -+.++=+++++. +.+.|.++.+.
T Consensus 190 ~~~----~~~v~i~TKs~lid~L~~l~~~-~~v~V~~Sitt--~~l~r~~EP~a--ps~~~RL~Ai~~-l~~aGipv~v~ 259 (368)
T 4fhd_A 190 ATD----YGRLRFVTKYEHVDHLLDARHN-GKTRFRFSINS--RYVINHFEPGT--SSFDGRLAAARK-VAGAGYKLGFV 259 (368)
T ss_dssp HCS----SEEEEEEESCCCCGGGTTCCCT-TCEEEEEEECC--HHHHHHHCTTS--CCHHHHHHHHHH-HHHTTCEEEEE
T ss_pred hCC----CceEEEEeCCcCHHHHHhcCcC-CceEEEEEEcC--HHHHHHcCCCC--CCHHHHHHHHHH-HHHCCCeEEEE
Confidence 652 13689999776422 2222222 24678889964 67788887753 478888999955 56889998765
Q ss_pred E-EeeCCCCCCHHHHHHHHHHHh
Q 017203 269 Y-IMLDGVNDEEQHAHQLGKLLE 290 (375)
Q Consensus 269 ~-vli~gvND~~e~~~~L~~~l~ 290 (375)
+ +++|+ +|..++..++++.+.
T Consensus 260 iaPIiP~-~~~~e~y~~lle~l~ 281 (368)
T 4fhd_A 260 VAPIYRH-EGWERGYFELFQELA 281 (368)
T ss_dssp EEEECCC-TTHHHHHHHHHHHHH
T ss_pred EeCcCCC-CCCHHHHHHHHHHHH
Confidence 5 78898 555667777776443
No 14
>2cw6_A Hydroxymethylglutaryl-COA lyase, mitochondrial; HMG-COA lyase, ketogenic enzyme; HET: 3HG; 2.10A {Homo sapiens} PDB: 3mp3_A* 3mp4_A 3mp5_A*
Probab=82.99 E-value=29 Score=31.96 Aligned_cols=179 Identities=8% Similarity=-0.005 Sum_probs=100.9
Q ss_pred cCCCHHHHHHHHHHhhhhCCcceEEEEeCC-----CcccCHHHHHHHHHHhhCC-CCCCCCCeEEEEeCCchhhHHHHhh
Q 017203 143 SNLSSGEIVEQLVHASRLSNIRNVVFMGMG-----EPLNNYAALVEAVRIMTGL-PFQVSPKRITVSTVGIVHAINKFHS 216 (375)
Q Consensus 143 r~lt~~ei~~qi~~~~~~~~i~~Ivf~GmG-----EPlln~~~l~~~i~~l~~~-g~~i~~~~itisTnG~~~~i~~l~~ 216 (375)
..++.++.++-+....+ .+++.|-+.+ + +|.+. + ..++++.+++. + ..+...+.. ...+++..+
T Consensus 22 ~~~~~e~k~~i~~~L~~-~Gv~~IE~g~-~~~~~~~p~~~-d-~~~~~~~~~~~~~-----~~~~~l~~~-~~~i~~a~~ 91 (298)
T 2cw6_A 22 NIVSTPVKIKLIDMLSE-AGLSVIETTS-FVSPKWVPQMG-D-HTEVLKGIQKFPG-----INYPVLTPN-LKGFEAAVA 91 (298)
T ss_dssp SCCCHHHHHHHHHHHHH-TTCSEECCEE-CCCTTTCGGGT-T-HHHHHHHSCCCTT-----CBCCEECCS-HHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHH-cCcCEEEECC-CcCcccccccC-C-HHHHHHHHhhCCC-----CEEEEEcCC-HHhHHHHHH
Confidence 45888888876666544 4677776665 4 67764 3 34566666654 3 223222221 234666666
Q ss_pred hCCCceEEEEecCCCHHHHhhhcCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEEeeCCC----CCCHHHHHHHHHHHhcC
Q 017203 217 DLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGV----NDEEQHAHQLGKLLETF 292 (375)
Q Consensus 217 ~~~~v~laiSL~a~~~~~r~~i~p~~~~~~~~~vl~~l~~~~~~~g~~v~i~~vli~gv----ND~~e~~~~L~~~l~~~ 292 (375)
.+. ..+.|+..+.+...+..+ .......++.+.+.+ +++++.|..+.+.....=+- -.+++.+.++++.+.+.
T Consensus 92 ag~-~~v~i~~~~sd~~~~~~~-~~~~~e~l~~~~~~i-~~a~~~G~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (298)
T 2cw6_A 92 AGA-KEVVIFGAASELFTKKNI-NCSIEESFQRFDAIL-KAAQSANISVRGYVSCALGCPYEGKISPAKVAEVTKKFYSM 168 (298)
T ss_dssp TTC-SEEEEEEESCHHHHHHHH-SCCHHHHHHHHHHHH-HHHHHTTCEEEEEEETTTCBTTTBSCCHHHHHHHHHHHHHT
T ss_pred CCC-CEEEEEecCCHHHHHHHh-CCCHHHHHHHHHHHH-HHHHHCCCeEEEEEEEEeeCCcCCCCCHHHHHHHHHHHHHc
Confidence 542 346676655544444444 111223455555666 56677888877654432110 12678899999999999
Q ss_pred CCE-EEEeecCCCCCCCCCCCCcHHHHHHHHHHHHhcC-C--ceEEeccCCCcc
Q 017203 293 QVV-VNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSY-N--IRTTVRKQMGQD 342 (375)
Q Consensus 293 ~~~-vnLip~np~~~~~~~~~~s~e~i~~f~~~l~~~~-G--i~v~vR~~~g~d 342 (375)
++. |+|- .+ . ++ ..++++.++.+.+++.. + +.+..-+..|.-
T Consensus 169 Ga~~i~l~---DT-~--G~--~~P~~~~~lv~~l~~~~~~~~i~~H~Hn~~Gla 214 (298)
T 2cw6_A 169 GCYEISLG---DT-I--GV--GTPGIMKDMLSAVMQEVPLAALAVHCHDTYGQA 214 (298)
T ss_dssp TCSEEEEE---ET-T--SC--CCHHHHHHHHHHHHHHSCGGGEEEEEBCTTSCH
T ss_pred CCCEEEec---CC-C--CC--cCHHHHHHHHHHHHHhCCCCeEEEEECCCCchH
Confidence 875 5543 22 1 12 34566666666665334 2 445666677764
No 15
>2ztj_A Homocitrate synthase; (beta/alpha)8 TIM barrel, substrate complex, amino-acid BIOS lysine biosynthesis, transferase; HET: AKG; 1.80A {Thermus thermophilus} PDB: 2ztk_A* 2zyf_A* 3a9i_A*
Probab=69.40 E-value=74 Score=30.38 Aligned_cols=176 Identities=13% Similarity=0.141 Sum_probs=93.4
Q ss_pred ccCCCHHHHHHHHHHhhhhCCcceEEEEeCCCcccCHHHHHHHHHHhhCCCCCCCCCeEEEEeCCchhhHHHHhhhCCCc
Q 017203 142 KSNLSSGEIVEQLVHASRLSNIRNVVFMGMGEPLNNYAALVEAVRIMTGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 221 (375)
Q Consensus 142 ~r~lt~~ei~~qi~~~~~~~~i~~Ivf~GmGEPlln~~~l~~~i~~l~~~g~~i~~~~itisTnG~~~~i~~l~~~~~~v 221 (375)
...++.++.++-+....+ .+++.|-+. -|-..+ ...++++.+.+.++. ..+..-.-+....+++..+.+. .
T Consensus 19 ~~~~~~~~k~~ia~~L~~-~Gv~~IE~g---~p~~~~-~~~~~~~~i~~~~~~---~~v~~~~r~~~~di~~a~~~g~-~ 89 (382)
T 2ztj_A 19 KANFSTQDKVEIAKALDE-FGIEYIEVT---TPVASP-QSRKDAEVLASLGLK---AKVVTHIQCRLDAAKVAVETGV-Q 89 (382)
T ss_dssp TCCCCHHHHHHHHHHHHH-HTCSEEEEC---CTTSCH-HHHHHHHHHHTSCCS---SEEEEEEESCHHHHHHHHHTTC-S
T ss_pred CCCcCHHHHHHHHHHHHH-cCcCEEEEc---CCcCCH-HHHHHHHHHHhcCCC---cEEEEEcccChhhHHHHHHcCC-C
Confidence 356888888777666554 356766663 387774 567888888876532 2333222233344666665542 2
Q ss_pred eEEEEecCCCHHHHhhhcCCCCCCCHHH----HHHHHHHHHHhcC--CcEEEEEEeeCCCCCCHHHHHHHHHHHhcCCCE
Q 017203 222 NLAVSLHAPVQDVRCQIMPAARAFPLEK----LMNALKEYQKNSQ--QKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVV 295 (375)
Q Consensus 222 ~laiSL~a~~~~~r~~i~p~~~~~~~~~----vl~~l~~~~~~~g--~~v~i~~vli~gvND~~e~~~~L~~~l~~~~~~ 295 (375)
.+.+.+ +.++-.+..+ +.+.++ +.+.+ +++++.| ..+.+. +....-.+++.+.++++.+.+. +.
T Consensus 90 ~v~i~~-~~s~~~~~~~-----~~s~~e~l~~~~~~v-~~ak~~g~~~~v~~~--~ed~~~~~~~~~~~~~~~~~~~-a~ 159 (382)
T 2ztj_A 90 GIDLLF-GTSKYLRAPH-----GRDIPRIIEEAKEVI-AYIREAAPHVEVRFS--AEDTFRSEEQDLLAVYEAVAPY-VD 159 (382)
T ss_dssp EEEEEE-CC-------------CCCHHHHHHHHHHHH-HHHHHHCTTSEEEEE--ETTTTTSCHHHHHHHHHHHGGG-CS
T ss_pred EEEEEe-ccCHHHHHHh-----CCCHHHHHHHHHHHH-HHHHHcCCCEEEEEE--EEeCCCCCHHHHHHHHHHHHHh-cC
Confidence 344444 2333222222 224444 44555 4566778 555544 4444455678888888888877 64
Q ss_pred -EEEeecCCCCCCCCCCCCcHHHHHHHHHHHHhc--CC--ceEEeccCCCcchh
Q 017203 296 -VNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGS--YN--IRTTVRKQMGQDIS 344 (375)
Q Consensus 296 -vnLip~np~~~~~~~~~~s~e~i~~f~~~l~~~--~G--i~v~vR~~~g~di~ 344 (375)
++|-.-. ++- .+.++.++.+.+++. .+ +.+..-+..|.-+.
T Consensus 160 ~i~l~DT~------G~~--~P~~~~~lv~~l~~~~~~~~~i~~H~Hnd~GlAvA 205 (382)
T 2ztj_A 160 RVGLADTV------GVA--TPRQVYALVREVRRVVGPRVDIEFHGHNDTGCAIA 205 (382)
T ss_dssp EEEEEETT------SCC--CHHHHHHHHHHHHHHHTTTSEEEEEEBCTTSCHHH
T ss_pred EEEecCCC------CCC--CHHHHHHHHHHHHHhcCCCCeEEEEeCCCccHHHH
Confidence 5543221 122 244555555555422 23 34556667776543
No 16
>2l69_A Rossmann 2X3 fold protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=61.23 E-value=52 Score=25.06 Aligned_cols=75 Identities=13% Similarity=0.329 Sum_probs=53.4
Q ss_pred CHHHHHHHHHHHHHhcCCcEEEEEEeeCCCCCCHHHHHHHHHHHhcCCCEEEEeecCCCCCCCCCCCCcHHHHHHHHHHH
Q 017203 246 PLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKIL 325 (375)
Q Consensus 246 ~~~~vl~~l~~~~~~~g~~v~i~~vli~gvND~~e~~~~L~~~l~~~~~~vnLip~np~~~~~~~~~~s~e~i~~f~~~l 325 (375)
+-.++.+.+.++.++++..+. .+++ |+.+-+++.++|++.+|+.|-+|-|.. +...+++|-+.+
T Consensus 34 spqelkdsieelvkkynativ--vvvv----ddkewaekairfvkslgaqvliiiydq----------dqnrleefsrev 97 (134)
T 2l69_A 34 SPQELKDSIEELVKKYNATIV--VVVV----DDKEWAEKAIRFVKSLGAQVLIIIYDQ----------DQNRLEEFSREV 97 (134)
T ss_dssp SHHHHHHHHHHHTTCCCCEEE--EEEC----SSHHHHHHHHHHHHHHCCCCEEEEECS----------CHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhCCeEE--EEEE----ccHHHHHHHHHHHHhcCCeEEEEEEeC----------chhHHHHHHHHH
Confidence 345667777777776665433 3333 467889999999999999877776653 356788999888
Q ss_pred HhcCCceEEecc
Q 017203 326 RGSYNIRTTVRK 337 (375)
Q Consensus 326 ~~~~Gi~v~vR~ 337 (375)
+ ..|+.|.--.
T Consensus 98 r-rrgfevrtvt 108 (134)
T 2l69_A 98 R-RRGFEVRTVT 108 (134)
T ss_dssp H-HTTCCEEEES
T ss_pred H-hcCceEEEec
Confidence 8 6888875433
No 17
>2v9d_A YAGE; dihydrodipicolinic acid synthase, N-acetyl neuraminate lyase, NAL, lyase, DHDPS, prophage; 2.15A {Escherichia coli} PDB: 2v8z_A 3nev_A* 3n2x_A*
Probab=54.55 E-value=1e+02 Score=29.01 Aligned_cols=127 Identities=12% Similarity=0.167 Sum_probs=68.3
Q ss_pred CCCHHHHHHHHHHhhhhCCcceEEEEeC-CC-cccCHHHHHHHHHHhhCC-CCCCCCCeEEEEeCC--chhhH--HHHhh
Q 017203 144 NLSSGEIVEQLVHASRLSNIRNVVFMGM-GE-PLNNYAALVEAVRIMTGL-PFQVSPKRITVSTVG--IVHAI--NKFHS 216 (375)
Q Consensus 144 ~lt~~ei~~qi~~~~~~~~i~~Ivf~Gm-GE-Plln~~~l~~~i~~l~~~-g~~i~~~~itisTnG--~~~~i--~~l~~ 216 (375)
.++.+.+...+..... .++++|++.|. || |+|..++-.++++.+.+. + +...+.+-|.+ +...+ -+.++
T Consensus 48 ~ID~~~l~~lv~~li~-~Gv~Gl~v~GtTGE~~~Ls~eEr~~vi~~~ve~~~---grvpViaGvg~~st~eai~la~~A~ 123 (343)
T 2v9d_A 48 QLDKPGTAALIDDLIK-AGVDGLFFLGSGGEFSQLGAEERKAIARFAIDHVD---RRVPVLIGTGGTNARETIELSQHAQ 123 (343)
T ss_dssp SBCHHHHHHHHHHHHH-TTCSCEEESSTTTTGGGSCHHHHHHHHHHHHHHHT---TSSCEEEECCSSCHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHH-cCCCEEEeCccccChhhCCHHHHHHHHHHHHHHhC---CCCcEEEecCCCCHHHHHHHHHHHH
Confidence 4666666665555443 47899999885 89 888887777777766543 2 11234444443 33322 23333
Q ss_pred hCCCceEEEEecCCCHHHHhhhcCCCCCCCHHHHHHHHHHHHHhcCCcEEE-EEEeeCCCCCCHHHHHHHH
Q 017203 217 DLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFI-EYIMLDGVNDEEQHAHQLG 286 (375)
Q Consensus 217 ~~~~v~laiSL~a~~~~~r~~i~p~~~~~~~~~vl~~l~~~~~~~g~~v~i-~~vli~gvND~~e~~~~L~ 286 (375)
... .+-.+.+ .|. + .+.+-+.+.+-.+......+.+|.+ +++-.-|++-+.+.+.+|+
T Consensus 124 ~~G-adavlv~-~P~------Y----~~~s~~~l~~~f~~VA~a~~lPiilYn~P~~tg~~l~~e~~~~La 182 (343)
T 2v9d_A 124 QAG-ADGIVVI-NPY------Y----WKVSEANLIRYFEQVADSVTLPVMLYNFPALTGQDLTPALVKTLA 182 (343)
T ss_dssp HHT-CSEEEEE-CCS------S----SCCCHHHHHHHHHHHHHTCSSCEEEEECHHHHSSCCCHHHHHHHH
T ss_pred hcC-CCEEEEC-CCC------C----CCCCHHHHHHHHHHHHHhcCCCEEEEeCchhcCcCCCHHHHHHHH
Confidence 322 3322222 110 0 0124456666665656666667554 3333336777777777776
No 18
>3b4u_A Dihydrodipicolinate synthase; structural genomics, PSI-2, MC protein structure initiative, midwest center for structural genomics; 1.20A {Agrobacterium tumefaciens str}
Probab=53.98 E-value=1.3e+02 Score=27.40 Aligned_cols=127 Identities=11% Similarity=0.067 Sum_probs=73.0
Q ss_pred CCCHHHHHHHHHHhhhhCCcceEEEEeC-CC-cccCHHHHHHHHHHhhCC-CCCCCCCeEEEEeCC--chhhH--HHHhh
Q 017203 144 NLSSGEIVEQLVHASRLSNIRNVVFMGM-GE-PLNNYAALVEAVRIMTGL-PFQVSPKRITVSTVG--IVHAI--NKFHS 216 (375)
Q Consensus 144 ~lt~~ei~~qi~~~~~~~~i~~Ivf~Gm-GE-Plln~~~l~~~i~~l~~~-g~~i~~~~itisTnG--~~~~i--~~l~~ 216 (375)
.++.+.+...+..... .++++|++.|. || |+|..++-.++++.+.+. + +...+.+-+.+ +...+ .+.++
T Consensus 20 ~iD~~~l~~lv~~li~-~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~---gr~pviaGvg~~~t~~ai~la~~A~ 95 (294)
T 3b4u_A 20 TVDIDAMIAHARRCLS-NGCDSVTLFGTTGEGCSVGSRERQAILSSFIAAGI---APSRIVTGVLVDSIEDAADQSAEAL 95 (294)
T ss_dssp SBCHHHHHHHHHHHHH-TTCSEEEESSTTTTGGGSCHHHHHHHHHHHHHTTC---CGGGEEEEECCSSHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHH-cCCCEEEECccccChhhCCHHHHHHHHHHHHHHhC---CCCcEEEeCCCccHHHHHHHHHHHH
Confidence 4666666666655444 47899999885 89 888888888888877655 2 11234444443 33322 33334
Q ss_pred hCCCceEEEEecCCCHHHHhhhcCCCCC-CCHHHHHHHHHHHHHhc---CCcEEE-EEEeeCCCCCCHHHHHHHH
Q 017203 217 DLPGLNLAVSLHAPVQDVRCQIMPAARA-FPLEKLMNALKEYQKNS---QQKIFI-EYIMLDGVNDEEQHAHQLG 286 (375)
Q Consensus 217 ~~~~v~laiSL~a~~~~~r~~i~p~~~~-~~~~~vl~~l~~~~~~~---g~~v~i-~~vli~gvND~~e~~~~L~ 286 (375)
... .+-.+.+ .|. + .+ .+-+.+.+-.+...... +.++.+ +++-.-|++-+.+.+.+|+
T Consensus 96 ~~G-adavlv~-~P~------y----~~~~s~~~l~~~f~~va~a~p~~~lPiilYn~P~~tg~~l~~~~~~~La 158 (294)
T 3b4u_A 96 NAG-ARNILLA-PPS------Y----FKNVSDDGLFAWFSAVFSKIGKDARDILVYNIPSVTMVTLSVELVGRLK 158 (294)
T ss_dssp HTT-CSEEEEC-CCC------S----SCSCCHHHHHHHHHHHHHHHCTTCCCEEEEECHHHHSCCCCHHHHHHHH
T ss_pred hcC-CCEEEEc-CCc------C----CCCCCHHHHHHHHHHHHHhcCCCCCcEEEEECcchhCcCCCHHHHHHHH
Confidence 432 3432222 111 0 11 24466676666666666 677654 4443447777887777776
No 19
>3na8_A Putative dihydrodipicolinate synthetase; lyase; HET: MSE; 1.85A {Pseudomonas aeruginosa}
Probab=51.59 E-value=1.3e+02 Score=27.75 Aligned_cols=126 Identities=10% Similarity=0.111 Sum_probs=68.7
Q ss_pred CCCHHHHHHHHHHhhhhCCcceEEEEeC-CC-cccCHHHHHHHHHHhhCC-CCCCCCCeEEEEe--CCchhhH--HHHhh
Q 017203 144 NLSSGEIVEQLVHASRLSNIRNVVFMGM-GE-PLNNYAALVEAVRIMTGL-PFQVSPKRITVST--VGIVHAI--NKFHS 216 (375)
Q Consensus 144 ~lt~~ei~~qi~~~~~~~~i~~Ivf~Gm-GE-Plln~~~l~~~i~~l~~~-g~~i~~~~itisT--nG~~~~i--~~l~~ 216 (375)
.++.+.+...+..... .++++|++.|. || |+|..++-.++++.+.+. +-. ..+-+-| |.+...+ -+.++
T Consensus 41 ~iD~~~l~~lv~~li~-~Gv~Gi~v~GtTGE~~~Ls~~Er~~v~~~~v~~~~gr---vpViaGvg~~~t~~ai~la~~A~ 116 (315)
T 3na8_A 41 GLDLPALGRSIERLID-GGVHAIAPLGSTGEGAYLSDPEWDEVVDFTLKTVAHR---VPTIVSVSDLTTAKTVRRAQFAE 116 (315)
T ss_dssp SBCHHHHHHHHHHHHH-TTCSEEECSSGGGTGGGSCHHHHHHHHHHHHHHHTTS---SCBEEECCCSSHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHH-cCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCC---CcEEEecCCCCHHHHHHHHHHHH
Confidence 4666666666655443 57899998885 88 888887777777766543 211 2343443 3333322 23333
Q ss_pred hCCCceEEEEecCCCHHHHhhhcCCCCCCCHHHHHHHHHHHHHhcCCcEEE-EEEeeCCCCCCHHHHHHH
Q 017203 217 DLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFI-EYIMLDGVNDEEQHAHQL 285 (375)
Q Consensus 217 ~~~~v~laiSL~a~~~~~r~~i~p~~~~~~~~~vl~~l~~~~~~~g~~v~i-~~vli~gvND~~e~~~~L 285 (375)
... .+-.+.+ .| .-.+.+-+.+.+-.+...+..+.++.+ +++-.-|++-+.+.+.+|
T Consensus 117 ~~G-adavlv~-~P----------~y~~~s~~~l~~~f~~va~a~~lPiilYn~P~~tg~~l~~~~~~~L 174 (315)
T 3na8_A 117 SLG-AEAVMVL-PI----------SYWKLNEAEVFQHYRAVGEAIGVPVMLYNNPGTSGIDMSVELILRI 174 (315)
T ss_dssp HTT-CSEEEEC-CC----------CSSCCCHHHHHHHHHHHHHHCSSCEEEEECHHHHSCCCCHHHHHHH
T ss_pred hcC-CCEEEEC-CC----------CCCCCCHHHHHHHHHHHHHhCCCcEEEEeCcchhCcCCCHHHHHHH
Confidence 432 3432222 11 001124466666676666667777654 333334677777666666
No 20
>3lot_A Uncharacterized protein; protein of unknown function, structural genomics, joint CENT structural genomics, JCSG; HET: MSE; 1.89A {Archaeoglobus fulgidus}
Probab=50.60 E-value=1.6e+02 Score=27.40 Aligned_cols=160 Identities=13% Similarity=0.043 Sum_probs=89.3
Q ss_pred cCCCHHHHHHHHHHhhhh-CCcceEEEEe--CCCcccCHHHHHHHHHHhhCC-CCCCCCCeEEEEeCCch-h---hHHHH
Q 017203 143 SNLSSGEIVEQLVHASRL-SNIRNVVFMG--MGEPLNNYAALVEAVRIMTGL-PFQVSPKRITVSTVGIV-H---AINKF 214 (375)
Q Consensus 143 r~lt~~ei~~qi~~~~~~-~~i~~Ivf~G--mGEPlln~~~l~~~i~~l~~~-g~~i~~~~itisTnG~~-~---~i~~l 214 (375)
-.+|++||+++.....+. ..+-++..=. -|.|+..++.+.+++..+++. + .-|.++|-|.. . .-+++
T Consensus 27 lPvTpeEia~~A~~~~~AGAaivHlHvRdp~dG~ps~d~~~y~e~i~~IR~~~d-----~iI~~TTgg~~~~~~~~eeR~ 101 (314)
T 3lot_A 27 LPVTPDQIVEEAVKAAEAGAGMVHIHARDPKDGRPTTDVEVFRYICREIKKQSD-----VVINVTTGGGGTLGIPVEERA 101 (314)
T ss_dssp SCCSHHHHHHHHHHHHHHTCSEEEECEECTTTCCEECCHHHHHHHHHHHHHHCC-----CEEEECSSTTGGGTCCHHHHT
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEeecCCCCCCcCCCHHHHHHHHHHHHhcCC-----eEEEeCCCCcCCCCCCHHHHH
Confidence 468999999998875542 2344555544 388999988888888888764 3 45888887742 1 11233
Q ss_pred h---hhCCCceEEEEecCCC----H-------------HH-----HhhhcCCCCCCCHHHHHHHHHHHHHhcCCcEEEEE
Q 017203 215 H---SDLPGLNLAVSLHAPV----Q-------------DV-----RCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEY 269 (375)
Q Consensus 215 ~---~~~~~v~laiSL~a~~----~-------------~~-----r~~i~p~~~~~~~~~vl~~l~~~~~~~g~~v~i~~ 269 (375)
+ +..|. ...+++-+.+ + .. ++.++. .+.+.+.+.+ ...++.|.+..++.
T Consensus 102 ~~~~~~~Pe-~aSln~Gs~Nf~~~~~~~~~~~~~~~~e~~~~~~~~~~v~~----N~~~~i~~~~-~~~~e~Gi~pE~e~ 175 (314)
T 3lot_A 102 KVVPALKPE-IATFNMGSMNFAIHPLLKKYKEFKYDWEPEYLEMTRDIVFR----NTFKDLEALS-RIFKENDTKPELEC 175 (314)
T ss_dssp THHHHHCCS-EEEEECCCEECBCTTHHHHCCCCSSTHHHHHHHHGGGCEEC----CCHHHHHHHH-HHHHHHTCEEEEEE
T ss_pred HHHHhcCCc-eeeecCCCcccccccccccccccccccchhhcccCCCceec----CCHHHHHHHH-HHHHHcCCEEEEEE
Confidence 2 22332 1223332111 0 00 111221 2566666666 44567787777665
Q ss_pred EeeCCCCCCHHHHHHHHHHHhcC----CCEEEEeecCCCCCCCCCCCCcHHHHHHHHHHH
Q 017203 270 IMLDGVNDEEQHAHQLGKLLETF----QVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKIL 325 (375)
Q Consensus 270 vli~gvND~~e~~~~L~~~l~~~----~~~vnLip~np~~~~~~~~~~s~e~i~~f~~~l 325 (375)
- +..++..+..|++.- +..+++.-=.+. . .+++.+.+..|.+.+
T Consensus 176 f-------d~g~l~~~~~l~~~Gll~~p~~~~~VlGv~~----G-~~~~p~~L~~~~~~~ 223 (314)
T 3lot_A 176 Y-------DIGQIYNTAFMFHEGYLEPPLRLQFIHGILG----G-IGTAVEDVLFMKQTA 223 (314)
T ss_dssp C-------SHHHHHHHHHHHHTTCSCSSEEEEEEECCBT----S-CCCCHHHHHHHHHHH
T ss_pred E-------CHHHHHHHHHHHHCCCCCCCceEEEEecCCC----C-CCCCHHHHHHHHHHh
Confidence 3 567888888887642 123444211111 1 255677777777654
No 21
>2y7e_A 3-keto-5-aminohexanoate cleavage enzyme; lyase, aldolase; 1.28A {Candidatus cloacamonas acidaminovoransorganism_taxid} PDB: 2y7d_A 2y7f_A* 2y7g_A
Probab=48.62 E-value=1.4e+02 Score=27.34 Aligned_cols=159 Identities=13% Similarity=0.072 Sum_probs=89.2
Q ss_pred CCCHHHHHHHHHHhhhhCCcceEEEE---eCCCcccCHHHHHHHHHHhhCCCCCCCCCeEEEEeCCchh--hHHHHh--h
Q 017203 144 NLSSGEIVEQLVHASRLSNIRNVVFM---GMGEPLNNYAALVEAVRIMTGLPFQVSPKRITVSTVGIVH--AINKFH--S 216 (375)
Q Consensus 144 ~lt~~ei~~qi~~~~~~~~i~~Ivf~---GmGEPlln~~~l~~~i~~l~~~g~~i~~~~itisTnG~~~--~i~~l~--~ 216 (375)
.+|++||+++.....+. +..-|.+- --|.|++.++.+.+++..+++.. +..-|.++|.|... .-+++. +
T Consensus 30 PvTpeEia~~A~~a~~A-GAaivHlHvRd~~G~ps~d~~~~~e~~~~IR~~~---pd~ii~~TTg~~~~~~~eeR~~~~~ 105 (282)
T 2y7e_A 30 PITPEEQAKEAKACFEA-GARVIHLHIREDDGRPSQRLDRFQEAISAIREVV---PEIIIQISTGGAVGESFDKRLAPLA 105 (282)
T ss_dssp CCSHHHHHHHHHHHHHH-TEEEEEECEECTTSCEECCHHHHHHHHHHHHHHC---TTSEEEECSSCSTTCCHHHHHGGGG
T ss_pred CCCHHHHHHHHHHHHHc-CCcEEEEeecCCCCCcCCCHHHHHHHHHHHHHHC---CCeEEEeCCCCCCCCCHHHHHHHhh
Confidence 48999999998876542 22222221 12789999988888888888642 11568899966421 223333 2
Q ss_pred hCCCceEEEEecCCCHHHHhhhcCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEEeeCCCCCCHHHHHHHHHHHhcC-C--
Q 017203 217 DLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETF-Q-- 293 (375)
Q Consensus 217 ~~~~v~laiSL~a~~~~~r~~i~p~~~~~~~~~vl~~l~~~~~~~g~~v~i~~vli~gvND~~e~~~~L~~~l~~~-~-- 293 (375)
..| ....+++-+.+-. ..++. .+.+.+.+.+ ...++.|.+..++. . +..++..+..|++.- -
T Consensus 106 ~~P-e~asl~~gs~Nf~--~~v~~----n~~~~~~~~~-~~~~e~Gv~pE~e~--f-----d~g~l~~~~~l~~~Gl~p~ 170 (282)
T 2y7e_A 106 LKP-EMATLNAGTLNFG--DDIFI----NHPADIIRLA-EAFKQYNVVPEVEV--Y-----ESGMVDAVARLIKKGIITQ 170 (282)
T ss_dssp GCC-SEEEEECCCEEET--TEEEC----CCHHHHHHHH-HHHHHTTCEEEEEE--C-----SHHHHHHHHHHHHTTSCCC
T ss_pred cCC-CEEEecccccccc--ccccc----CCHHHHHHHH-HHHHHcCCeEEEEE--E-----CHHHHHHHHHHHHcCCCCC
Confidence 233 2223444332211 12221 3556666666 44556777766654 3 467888888887642 1
Q ss_pred --CEEEEeecCCCCCCCCCCCCcHHHHHHHHHHHH
Q 017203 294 --VVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILR 326 (375)
Q Consensus 294 --~~vnLip~np~~~~~~~~~~s~e~i~~f~~~l~ 326 (375)
..+++.--.+. + -+++.+.+..+.+.+-
T Consensus 171 ~p~~~~~VlGv~~--g---~~~~~~~L~~~~~~lp 200 (282)
T 2y7e_A 171 NPLHIQFVLGVPG--G---MSGKPKNLMYMMEHLK 200 (282)
T ss_dssp SSCEEEEEECCTT--S---CCCCHHHHHHHHHHHH
T ss_pred CCeEEEEEEecCC--C---CCCCHHHHHHHHHhcc
Confidence 23444311122 1 2466777777776664
No 22
>3qze_A DHDPS, dihydrodipicolinate synthase; alpha beta barrel, cytoplasmic; 1.59A {Pseudomonas aeruginosa} PDB: 3puo_A* 3noe_A 3ps7_A* 3s8h_A
Probab=48.19 E-value=1.2e+02 Score=28.12 Aligned_cols=128 Identities=9% Similarity=0.092 Sum_probs=68.8
Q ss_pred CCCHHHHHHHHHHhhhhCCcceEEEEeC-CC-cccCHHHHHHHHHHhhCC-CCCCCCCeEEEEeCC--chhhH--HHHhh
Q 017203 144 NLSSGEIVEQLVHASRLSNIRNVVFMGM-GE-PLNNYAALVEAVRIMTGL-PFQVSPKRITVSTVG--IVHAI--NKFHS 216 (375)
Q Consensus 144 ~lt~~ei~~qi~~~~~~~~i~~Ivf~Gm-GE-Plln~~~l~~~i~~l~~~-g~~i~~~~itisTnG--~~~~i--~~l~~ 216 (375)
.++.+.+...+..... .++++|++.|. || |+|..++-.++++...+. + +...+.+-|.+ +...+ -+.++
T Consensus 40 ~iD~~~l~~lv~~li~-~Gv~Gl~v~GtTGE~~~Ls~~Er~~v~~~~v~~~~---grvpViaGvg~~st~eai~la~~A~ 115 (314)
T 3qze_A 40 RLDWDSLAKLVDFHLQ-EGTNAIVAVGTTGESATLDVEEHIQVIRRVVDQVK---GRIPVIAGTGANSTREAVALTEAAK 115 (314)
T ss_dssp CBCHHHHHHHHHHHHH-HTCCEEEESSGGGTGGGCCHHHHHHHHHHHHHHHT---TSSCEEEECCCSSHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHH-cCCCEEEECccccChhhCCHHHHHHHHHHHHHHhC---CCCcEEEeCCCcCHHHHHHHHHHHH
Confidence 4666666665555443 37899999875 88 888887777777666543 2 11235444443 33222 23333
Q ss_pred hCCCceEEEEecCCCHHHHhhhcCCCCCCCHHHHHHHHHHHHHhcCCcEEE-EEEeeCCCCCCHHHHHHHHH
Q 017203 217 DLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFI-EYIMLDGVNDEEQHAHQLGK 287 (375)
Q Consensus 217 ~~~~v~laiSL~a~~~~~r~~i~p~~~~~~~~~vl~~l~~~~~~~g~~v~i-~~vli~gvND~~e~~~~L~~ 287 (375)
... .+-.+.+ .|. + .+.+-+.+.+-.+......+.++.+ +++-.-|++-+++.+.+|++
T Consensus 116 ~~G-adavlv~-~P~------y----~~~s~~~l~~~f~~va~a~~lPiilYn~P~~tg~~l~~~~~~~La~ 175 (314)
T 3qze_A 116 SGG-ADACLLV-TPY------Y----NKPTQEGMYQHFRHIAEAVAIPQILYNVPGRTSCDMLPETVERLSK 175 (314)
T ss_dssp HTT-CSEEEEE-CCC------S----SCCCHHHHHHHHHHHHHHSCSCEEEEECHHHHSCCCCHHHHHHHHT
T ss_pred HcC-CCEEEEc-CCC------C----CCCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCCCCHHHHHHHhc
Confidence 332 3422222 110 0 0123456666666666666777654 33323367777777666653
No 23
>3e96_A Dihydrodipicolinate synthase; structural genomics, nysgrc, target 9375C, operon, PSI-2; 1.80A {Bacillus clausii ksm-k16} SCOP: c.1.10.0
Probab=47.42 E-value=1.5e+02 Score=27.26 Aligned_cols=126 Identities=9% Similarity=0.015 Sum_probs=0.0
Q ss_pred cCCCHHHHHHHHHHhhhhCCcceEEEEeC-CC-cccCHHHHHHHHHHhhCC-CCCCCCCeEEEEeCCchh---hHHHHhh
Q 017203 143 SNLSSGEIVEQLVHASRLSNIRNVVFMGM-GE-PLNNYAALVEAVRIMTGL-PFQVSPKRITVSTVGIVH---AINKFHS 216 (375)
Q Consensus 143 r~lt~~ei~~qi~~~~~~~~i~~Ivf~Gm-GE-Plln~~~l~~~i~~l~~~-g~~i~~~~itisTnG~~~---~i~~l~~ 216 (375)
..++.+.+-..+..... .++++|++.|. || |+|..++-.++++.+.+. + +...+.+.|..... ..-+.++
T Consensus 28 g~iD~~~l~~lv~~li~-~Gv~Gl~v~GtTGE~~~Ls~eEr~~v~~~~v~~~~---grvpViaGvg~~t~~ai~la~~A~ 103 (316)
T 3e96_A 28 GSIDWHHYKETVDRIVD-NGIDVIVPCGNTSEFYALSLEEAKEEVRRTVEYVH---GRALVVAGIGYATSTAIELGNAAK 103 (316)
T ss_dssp CCBCHHHHHHHHHHHHT-TTCCEECTTSGGGTGGGSCHHHHHHHHHHHHHHHT---TSSEEEEEECSSHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHH-cCCCEEEeCccccCcccCCHHHHHHHHHHHHHHhC---CCCcEEEEeCcCHHHHHHHHHHHH
Q ss_pred hCCCceEEEEecCCCHHHHhhhcCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEEeeCCCCCCHHHHHHHHH
Q 017203 217 DLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGK 287 (375)
Q Consensus 217 ~~~~v~laiSL~a~~~~~r~~i~p~~~~~~~~~vl~~l~~~~~~~g~~v~i~~vli~gvND~~e~~~~L~~ 287 (375)
...-..+.+ +.|.-.+.+-+.+.+-.+......+.++.+--. |++-+.+.+.+|++
T Consensus 104 ~~Gadavlv------------~~P~y~~~s~~~l~~~f~~va~a~~lPiilYn~---g~~l~~~~~~~La~ 159 (316)
T 3e96_A 104 AAGADAVMI------------HMPIHPYVTAGGVYAYFRDIIEALDFPSLVYFK---DPEISDRVLVDLAP 159 (316)
T ss_dssp HHTCSEEEE------------CCCCCSCCCHHHHHHHHHHHHHHHTSCEEEEEC---CTTSCTHHHHHHTT
T ss_pred hcCCCEEEE------------cCCCCCCCCHHHHHHHHHHHHHhCCCCEEEEeC---CCCCCHHHHHHHHc
No 24
>3eb2_A Putative dihydrodipicolinate synthetase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2., structural genomics; HET: PGE; 2.04A {Rhodopseudomonas palustris} SCOP: c.1.10.0
Probab=47.19 E-value=1.2e+02 Score=27.82 Aligned_cols=129 Identities=11% Similarity=0.081 Sum_probs=67.4
Q ss_pred CCCHHHHHHHHHHhhhhCCcceEEEEeC-CC-cccCHHHHHHHHHHhhCC-CCCCCCCeEEEEeCCchhhH--HHHhhhC
Q 017203 144 NLSSGEIVEQLVHASRLSNIRNVVFMGM-GE-PLNNYAALVEAVRIMTGL-PFQVSPKRITVSTVGIVHAI--NKFHSDL 218 (375)
Q Consensus 144 ~lt~~ei~~qi~~~~~~~~i~~Ivf~Gm-GE-Plln~~~l~~~i~~l~~~-g~~i~~~~itisTnG~~~~i--~~l~~~~ 218 (375)
.++.+.+...+..... .++++|++.|. || |+|..++-.++++.+.+. +-.++ .-+.+.+|.+...+ -+.++..
T Consensus 21 ~iD~~~l~~lv~~li~-~Gv~gl~v~GttGE~~~Ls~~Er~~v~~~~~~~~~grvp-viaGvg~~~t~~ai~la~~a~~~ 98 (300)
T 3eb2_A 21 RVRADVMGRLCDDLIQ-AGVHGLTPLGSTGEFAYLGTAQREAVVRATIEAAQRRVP-VVAGVASTSVADAVAQAKLYEKL 98 (300)
T ss_dssp CBCHHHHHHHHHHHHH-TTCSCBBTTSGGGTGGGCCHHHHHHHHHHHHHHHTTSSC-BEEEEEESSHHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHH-cCCCEEEECccccCccccCHHHHHHHHHHHHHHhCCCCc-EEEeCCCCCHHHHHHHHHHHHHc
Confidence 4566665555555443 47888888875 88 778877766676666543 21121 33556666654432 2333332
Q ss_pred CCceEEEEecCCCHHHHhhhcCCCCCCCHHHHHHHHHHHHHhcCCcEEE-EEEeeCCCCCCHHHHHHHH
Q 017203 219 PGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFI-EYIMLDGVNDEEQHAHQLG 286 (375)
Q Consensus 219 ~~v~laiSL~a~~~~~r~~i~p~~~~~~~~~vl~~l~~~~~~~g~~v~i-~~vli~gvND~~e~~~~L~ 286 (375)
. .+-.+.+ .| .-.+.+-+.+.+-.+......+.++.+ +++-.-|++-+++.+.+|+
T Consensus 99 G-adavlv~-~P----------~y~~~~~~~l~~~f~~va~a~~lPiilYn~P~~tg~~l~~~~~~~La 155 (300)
T 3eb2_A 99 G-ADGILAI-LE----------AYFPLKDAQIESYFRAIADAVEIPVVIYTNPQFQRSDLTLDVIARLA 155 (300)
T ss_dssp T-CSEEEEE-EC----------CSSCCCHHHHHHHHHHHHHHCSSCEEEEECTTTCSSCCCHHHHHHHH
T ss_pred C-CCEEEEc-CC----------CCCCCCHHHHHHHHHHHHHHCCCCEEEEECccccCCCCCHHHHHHHH
Confidence 2 3322211 00 000123455666665556666777654 3333335666766666554
No 25
>3e49_A Uncharacterized protein DUF849 with A TIM barrel; structural genomics, joint center for structural genomics; HET: MSE; 1.75A {Burkholderia xenovorans LB400}
Probab=47.09 E-value=1.8e+02 Score=26.99 Aligned_cols=157 Identities=11% Similarity=0.108 Sum_probs=86.9
Q ss_pred cCCCHHHHHHHHHHhhhh-CCcceEEEEe--CCCcccCHHHHHHHHHHhhCC-CCCCCCCeEEEEeCCch-h-hHHHHh-
Q 017203 143 SNLSSGEIVEQLVHASRL-SNIRNVVFMG--MGEPLNNYAALVEAVRIMTGL-PFQVSPKRITVSTVGIV-H-AINKFH- 215 (375)
Q Consensus 143 r~lt~~ei~~qi~~~~~~-~~i~~Ivf~G--mGEPlln~~~l~~~i~~l~~~-g~~i~~~~itisTnG~~-~-~i~~l~- 215 (375)
-.+|++||+++.....+. ..+-++..=. -|.|++.++.+.+++..+++. . .-|.++|-|.. . .-++++
T Consensus 27 lPvTpeEia~~A~~~~~AGAaivHlHvRdp~dG~ps~d~~~~~e~~~~IR~~~d-----~iI~~TTgg~~~~~~eerla~ 101 (311)
T 3e49_A 27 LPVTPDEVAQASIGAAEAGAAVIHLHARDPRDGRPTQDPAAFAEFLPRIKSNTD-----AVINLTTGGSPHMTVEERLRP 101 (311)
T ss_dssp SCCSHHHHHHHHHHHHHHTCSEEEECEECTTTCCEECCHHHHTTHHHHHHHHCC-----CEEEECSCSCTTSCHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCcEEEEeecCCCCCCcCCCHHHHHHHHHHHHHhCC-----cEEEECCCCCCCCCHHHHHHH
Confidence 458999999998875542 2344454444 388999988888888888764 3 34777777643 1 112332
Q ss_pred --hhCCCceEEEEecCCC-----------------HH-----HHhhhcCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEEe
Q 017203 216 --SDLPGLNLAVSLHAPV-----------------QD-----VRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIM 271 (375)
Q Consensus 216 --~~~~~v~laiSL~a~~-----------------~~-----~r~~i~p~~~~~~~~~vl~~l~~~~~~~g~~v~i~~vl 271 (375)
...|. ...+++-+.+ +. .+..+++ .+.+.+.+.+ ..+.+.|.+..++.-
T Consensus 102 ~~~~~Pe-~aSln~gs~Nf~~~~~~~~~~~~~~~~e~~~~~~~~~~v~~----n~~~~i~~~~-~~~~e~Gi~pE~e~f- 174 (311)
T 3e49_A 102 ATHYMPE-LASLNMGSMNFGLYPMLERFKEFAHGWEREHLERSRDLVFK----NTFADIEFIL-KTCGGNGTRFEFECY- 174 (311)
T ss_dssp HHHHCCS-EEEEECSCEECCCGGGGGTCCCCSSHHHHHHHHGGGGCEEC----CCHHHHHHHH-HHHHTTTCEEEEEEC-
T ss_pred HHhcCCC-eeeecCCCcccccccchhhccccccccchhhcccCCCceec----CCHHHHHHHH-HHHHHcCCeeEEEEE-
Confidence 32342 2223322211 00 0122322 2455666666 445677777766643
Q ss_pred eCCCCCCHHHHHHHHHHHhcC--C--CEEEEeecCCCCCCCCCCCCcHHHHHHHH
Q 017203 272 LDGVNDEEQHAHQLGKLLETF--Q--VVVNLIPFNPIGSVSQFRTSSDDKVSSFQ 322 (375)
Q Consensus 272 i~gvND~~e~~~~L~~~l~~~--~--~~vnLip~np~~~~~~~~~~s~e~i~~f~ 322 (375)
+..++..+..|++.- . ..+++.-=.+. . .+++.+.+..+.
T Consensus 175 ------d~g~l~~~~~l~~~Gl~~~p~~~~~vlGv~~----g-~~~~~~~L~~~~ 218 (311)
T 3e49_A 175 ------DTSHLYNLAHFVDRKLATPPFFVQTVFGLLG----G-IGPHPEDLAHMR 218 (311)
T ss_dssp ------SHHHHHHHHHHHHTTCSCSSEEEEEEESCTT----S-CCCCHHHHHHHH
T ss_pred ------CHHHHHHHHHHHHcCCCCCCeEEEEEecCCC----C-CCCCHHHHHHHH
Confidence 567888888877642 1 23444321111 1 256677777777
No 26
>3daq_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis, amino-ACI biosynthesis, diaminopimelate biosynthesis, lyase, schiff B; 1.45A {Staphylococcus aureus} SCOP: c.1.10.0 PDB: 3di1_A 3di0_A
Probab=44.75 E-value=1.2e+02 Score=27.67 Aligned_cols=128 Identities=9% Similarity=0.098 Sum_probs=68.5
Q ss_pred CCCHHHHHHHHHHhhhhCCcceEEEEeC-CC-cccCHHHHHHHHHHhhCC-CCCCCCCeEEEEeC--CchhhH--HHHhh
Q 017203 144 NLSSGEIVEQLVHASRLSNIRNVVFMGM-GE-PLNNYAALVEAVRIMTGL-PFQVSPKRITVSTV--GIVHAI--NKFHS 216 (375)
Q Consensus 144 ~lt~~ei~~qi~~~~~~~~i~~Ivf~Gm-GE-Plln~~~l~~~i~~l~~~-g~~i~~~~itisTn--G~~~~i--~~l~~ 216 (375)
.++.+.+...+..... .++++|++.|. || |+|..++-.++++.+.+. + +...+-+.+. .+...+ -+.++
T Consensus 19 ~iD~~~l~~lv~~li~-~Gv~gl~v~GttGE~~~Lt~~Er~~v~~~~~~~~~---grvpviaGvg~~~t~~ai~la~~a~ 94 (292)
T 3daq_A 19 KVNLEALKAHVNFLLE-NNAQAIIVNGTTAESPTLTTDEKELILKTVIDLVD---KRVPVIAGTGTNDTEKSIQASIQAK 94 (292)
T ss_dssp EECHHHHHHHHHHHHH-TTCCEEEESSGGGTGGGSCHHHHHHHHHHHHHHHT---TSSCEEEECCCSCHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHH-cCCCEEEECccccccccCCHHHHHHHHHHHHHHhC---CCCcEEEeCCcccHHHHHHHHHHHH
Confidence 4555555555555443 57899998885 88 788877766666666543 2 1123544443 333222 23333
Q ss_pred hCCCceEEEEecCCCHHHHhhhcCCCCCCCHHHHHHHHHHHHHhcCCcEEE-EEEeeCCCCCCHHHHHHHHH
Q 017203 217 DLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFI-EYIMLDGVNDEEQHAHQLGK 287 (375)
Q Consensus 217 ~~~~v~laiSL~a~~~~~r~~i~p~~~~~~~~~vl~~l~~~~~~~g~~v~i-~~vli~gvND~~e~~~~L~~ 287 (375)
... .+-.+.+ .|. + .+.+-+.+.+-.+......+.++.+ +++-.-|++-+++.+.+|++
T Consensus 95 ~~G-adavlv~-~P~------y----~~~~~~~l~~~f~~ia~a~~lPiilYn~P~~tg~~l~~~~~~~La~ 154 (292)
T 3daq_A 95 ALG-ADAIMLI-TPY------Y----NKTNQRGLVKHFEAIADAVKLPVVLYNVPSRTNMTIEPETVEILSQ 154 (292)
T ss_dssp HHT-CSEEEEE-CCC------S----SCCCHHHHHHHHHHHHHHHCSCEEEEECHHHHSCCCCHHHHHHHHT
T ss_pred HcC-CCEEEEC-CCC------C----CCCCHHHHHHHHHHHHHhCCCCEEEEecccccCCCCCHHHHHHHhc
Confidence 322 3322222 110 0 0123456666666666666777654 33333477778777777765
No 27
>3chv_A Prokaryotic domain of unknown function (DUF849) W barrel fold; TIM barrel fold, structural genomics, joint center for struc genomics; HET: MSE; 1.45A {Silicibacter pomeroyi dss-3} PDB: 3fa5_A
Probab=43.79 E-value=1.9e+02 Score=26.41 Aligned_cols=161 Identities=12% Similarity=0.062 Sum_probs=88.5
Q ss_pred cCCCHHHHHHHHHHhhhh-CCcceEEEEe-CCCcccCHHHHHHHHHHhhCCCCCCCCCeEEEEeCCchh-hHHHHh--hh
Q 017203 143 SNLSSGEIVEQLVHASRL-SNIRNVVFMG-MGEPLNNYAALVEAVRIMTGLPFQVSPKRITVSTVGIVH-AINKFH--SD 217 (375)
Q Consensus 143 r~lt~~ei~~qi~~~~~~-~~i~~Ivf~G-mGEPlln~~~l~~~i~~l~~~g~~i~~~~itisTnG~~~-~i~~l~--~~ 217 (375)
-.+|++||+++.....+. ..+-++..=. -|.|++.++.+.+++..+++.. +..-|.++|.|... .-++++ ..
T Consensus 29 lPvTpeEia~~A~~~~~AGAaivHlH~Rd~~G~ps~d~~~~~e~~~~IR~~~---pd~ii~~TTgg~~~~~eeR~~~~~~ 105 (284)
T 3chv_A 29 VPITVSEQVESTQEAFEAGAAIAHCHVRNDDGTPSSDPDRFARLTEGLHTHC---PGMIVQFSTGGRSGAGQARGGMLPL 105 (284)
T ss_dssp CCCSHHHHHHHHHHHHHHTCCEEEECEECTTSCEECCHHHHHHHHHHHHHHS---TTCEEEECCCTTTCCGGGGGTTGGG
T ss_pred CCCCHHHHHHHHHHHHHcCCcEEEeeecCCCCCcCCCHHHHHHHHHHHHHhC---CCeEEEeCCCCCCCCHHHHHHhhhc
Confidence 348999999998876542 2233333332 2789999988888888888542 11568889866421 112222 22
Q ss_pred CCCceEEEEecCCCHHHHhhhcCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEEeeCCCCCCHHHHHHHHHHHhcC----C
Q 017203 218 LPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETF----Q 293 (375)
Q Consensus 218 ~~~v~laiSL~a~~~~~r~~i~p~~~~~~~~~vl~~l~~~~~~~g~~v~i~~vli~gvND~~e~~~~L~~~l~~~----~ 293 (375)
.| +++ ||+..+-..-+.++. .+.+.+.+.+ ...++.|.+..++. . +..++..+..+++.- +
T Consensus 106 ~P--e~a-Sl~~Gs~Nf~~~v~~----n~~~~~~~~~-~~~~e~Gv~pE~e~--f-----d~g~l~~~~~l~~~Gll~~p 170 (284)
T 3chv_A 106 KP--DMA-SLSVGSNNFPSRVYE----NPPDLVDWLA-AQMRSYRVTPEIEA--F-----DLSHILRAIDMHGRGLLYGK 170 (284)
T ss_dssp CC--SEE-EECCSCEECSSSEEC----CCHHHHHHHH-HHHHHHTCEEEEEE--S-----SHHHHHHHHHHHHTTCSCSS
T ss_pred CC--CEE-EecCcccccCCcccc----CCHHHHHHHH-HHHHHcCCEEEEEE--E-----CHHHHHHHHHHHHcCCCCCC
Confidence 23 322 333321111112221 2455555555 44556777776664 3 467888888777642 2
Q ss_pred CEEEEeecCCCCCCCCCCCCcHHHHHHHHHHHH
Q 017203 294 VVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILR 326 (375)
Q Consensus 294 ~~vnLip~np~~~~~~~~~~s~e~i~~f~~~l~ 326 (375)
..+++.--.+. + -+++.+.+..+.+.+-
T Consensus 171 ~~~~~vlGv~~--g---~~~~~~~L~~~~~~~p 198 (284)
T 3chv_A 171 LYVQFVMGVKN--A---MPADREVFDFYVRMMR 198 (284)
T ss_dssp CEEEEEECCTT--S---CCCCHHHHHHHHHHHH
T ss_pred ceEEEEEecCC--C---CCCCHHHHHHHHHhcc
Confidence 34554321222 1 2566777777776653
No 28
>1f6k_A N-acetylneuraminate lyase; beta barrel; 1.60A {Haemophilus influenzae} SCOP: c.1.10.1 PDB: 1f5z_A 1f6p_A 1f73_A* 1f74_A* 1f7b_A*
Probab=41.66 E-value=2e+02 Score=26.04 Aligned_cols=129 Identities=14% Similarity=0.198 Sum_probs=68.8
Q ss_pred CCCHHHHHHHHHHhhhhCCcceEEEEeC-CC-cccCHHHHHHHHHHhhCC-CCCCCCCeEEEEeCC--chhhH--HHHhh
Q 017203 144 NLSSGEIVEQLVHASRLSNIRNVVFMGM-GE-PLNNYAALVEAVRIMTGL-PFQVSPKRITVSTVG--IVHAI--NKFHS 216 (375)
Q Consensus 144 ~lt~~ei~~qi~~~~~~~~i~~Ivf~Gm-GE-Plln~~~l~~~i~~l~~~-g~~i~~~~itisTnG--~~~~i--~~l~~ 216 (375)
.++.+.+...+.......++++|++.|. || |+|..++-.++++...+. + +...+-.-|.+ +...+ -+.++
T Consensus 20 ~iD~~~l~~lv~~li~~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~---grvpviaGvg~~~t~~ai~la~~a~ 96 (293)
T 1f6k_A 20 TINEKGLRQIIRHNIDKMKVDGLYVGGSTGENFMLSTEEKKEIFRIAKDEAK---DQIALIAQVGSVNLKEAVELGKYAT 96 (293)
T ss_dssp CBCHHHHHHHHHHHHHTSCCSEEEESSGGGTGGGSCHHHHHHHHHHHHHHHT---TSSEEEEECCCSCHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHhhCCCcEEEeCccccchhhCCHHHHHHHHHHHHHHhC---CCCeEEEecCCCCHHHHHHHHHHHH
Confidence 4566655555555443147899998885 88 888887777777776643 2 11334444444 32222 23333
Q ss_pred hCCCceEEEEecCCCHHHHhhhcCCCCCCCHHHHHHHHHHHHHhcCCcEEE-EEEeeCCCCCCHHHHHHHHH
Q 017203 217 DLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFI-EYIMLDGVNDEEQHAHQLGK 287 (375)
Q Consensus 217 ~~~~v~laiSL~a~~~~~r~~i~p~~~~~~~~~vl~~l~~~~~~~g~~v~i-~~vli~gvND~~e~~~~L~~ 287 (375)
... .+-.+.+ .|. + .+.+-+.+.+-.+......+.++.+ +++-.-|++-+.+.+.+|++
T Consensus 97 ~~G-adavlv~-~P~------y----~~~~~~~l~~~f~~va~a~~lPiilYn~P~~tg~~l~~~~~~~La~ 156 (293)
T 1f6k_A 97 ELG-YDCLSAV-TPF------Y----YKFSFPEIKHYYDTIIAETGSNMIVYSIPFLTGVNMGIEQFGELYK 156 (293)
T ss_dssp HHT-CSEEEEE-CCC------S----SCCCHHHHHHHHHHHHHHHCCCEEEEECHHHHCCCCCHHHHHHHHT
T ss_pred hcC-CCEEEEC-CCC------C----CCCCHHHHHHHHHHHHHhCCCCEEEEECccccCcCCCHHHHHHHhc
Confidence 322 3322222 110 0 0123456666665556666677654 33333467777777777764
No 29
>1ydn_A Hydroxymethylglutaryl-COA lyase; TIM-barrel protein, structural genomics, PSI, protein struct initiative; 2.30A {Brucella melitensis}
Probab=41.29 E-value=2e+02 Score=25.93 Aligned_cols=176 Identities=11% Similarity=0.026 Sum_probs=97.0
Q ss_pred cCCCHHHHHHHHHHhhhhCCcceEEEEeC--CC--cccCHHHHHHHHHHhhCC-CCCCCCCeEEEEeCCchhhHHHHhhh
Q 017203 143 SNLSSGEIVEQLVHASRLSNIRNVVFMGM--GE--PLNNYAALVEAVRIMTGL-PFQVSPKRITVSTVGIVHAINKFHSD 217 (375)
Q Consensus 143 r~lt~~ei~~qi~~~~~~~~i~~Ivf~Gm--GE--Plln~~~l~~~i~~l~~~-g~~i~~~~itisTnG~~~~i~~l~~~ 217 (375)
..++.++.+.-+..+.+ .++..|-+.+. ++ |.+. ...++++.+.+. + .++.+-+ .....+++..+.
T Consensus 21 ~~~~~e~k~~i~~~L~~-~Gv~~IE~g~~~~~~~~p~~~--~~~e~~~~i~~~~~-----~~v~~l~-~n~~~i~~a~~~ 91 (295)
T 1ydn_A 21 RFVPTADKIALINRLSD-CGYARIEATSFVSPKWVPQLA--DSREVMAGIRRADG-----VRYSVLV-PNMKGYEAAAAA 91 (295)
T ss_dssp SCCCHHHHHHHHHHHTT-TTCSEEEEEECSCTTTCGGGT--THHHHHHHSCCCSS-----SEEEEEC-SSHHHHHHHHHT
T ss_pred CCcCHHHHHHHHHHHHH-cCcCEEEEccCcCcccccccc--CHHHHHHHHHhCCC-----CEEEEEe-CCHHHHHHHHHC
Confidence 45888888877777654 46666666543 34 4443 345777777654 3 3453333 113456666665
Q ss_pred CCCceEEEEecCCCHHHHhhhcCCCCCCCHHHHH----HHHHHHHHhcCCcEEEEEEeeCC----CCCCHHHHHHHHHHH
Q 017203 218 LPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLM----NALKEYQKNSQQKIFIEYIMLDG----VNDEEQHAHQLGKLL 289 (375)
Q Consensus 218 ~~~v~laiSL~a~~~~~r~~i~p~~~~~~~~~vl----~~l~~~~~~~g~~v~i~~vli~g----vND~~e~~~~L~~~l 289 (375)
+. ..+.|++.+.+-..+..+ ..+.++.+ +.+ +++++.|..|..+....-| .-.+++.+.++++.+
T Consensus 92 G~-~~V~i~~~~S~~h~~~~~-----~~~~~e~~~~~~~~v-~~a~~~G~~V~~~l~~~~~~e~~~~~~~~~~~~~~~~~ 164 (295)
T 1ydn_A 92 HA-DEIAVFISASEGFSKANI-----NCTIAESIERLSPVI-GAAINDGLAIRGYVSCVVECPYDGPVTPQAVASVTEQL 164 (295)
T ss_dssp TC-SEEEEEEESCHHHHHHHT-----SSCHHHHHHHHHHHH-HHHHHTTCEEEEEEECSSEETTTEECCHHHHHHHHHHH
T ss_pred CC-CEEEEEEecCHHHHHHHc-----CCCHHHHHHHHHHHH-HHHHHcCCeEEEEEEEEecCCcCCCCCHHHHHHHHHHH
Confidence 42 346666544322222222 22444444 445 5667888888754443311 123678899999988
Q ss_pred hcCCCE-EEEeecCCCCCCCCCCCCcHHHHHHHHHHHHhcCC-ce--EEeccCCCcc
Q 017203 290 ETFQVV-VNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYN-IR--TTVRKQMGQD 342 (375)
Q Consensus 290 ~~~~~~-vnLip~np~~~~~~~~~~s~e~i~~f~~~l~~~~G-i~--v~vR~~~g~d 342 (375)
.+.++. +++- ...| . ..++++.++.+.+++... +. +..-...|..
T Consensus 165 ~~~G~d~i~l~--Dt~G----~--~~P~~~~~lv~~l~~~~~~~~l~~H~Hn~~Gla 213 (295)
T 1ydn_A 165 FSLGCHEVSLG--DTIG----R--GTPDTVAAMLDAVLAIAPAHSLAGHYHDTGGRA 213 (295)
T ss_dssp HHHTCSEEEEE--ETTS----C--CCHHHHHHHHHHHHTTSCGGGEEEEEBCTTSCH
T ss_pred HhcCCCEEEec--CCCC----C--cCHHHHHHHHHHHHHhCCCCeEEEEECCCcchH
Confidence 888875 5554 2332 1 245666666666653443 33 3444456654
No 30
>3fkr_A L-2-keto-3-deoxyarabonate dehydratase; DHDPS/NAL family, complex, pyruvate, lyase; HET: KPI; 1.80A {Azospirillum brasilense} PDB: 3fkk_A
Probab=41.14 E-value=2.1e+02 Score=26.17 Aligned_cols=130 Identities=8% Similarity=0.039 Sum_probs=72.4
Q ss_pred CCCHHHHHHHHHHhhhhCCcceEEEEeC-CC-cccCHHHHHHHHHHhhCC-CCCCCCCeEEEEeCC--chhhH--HHHhh
Q 017203 144 NLSSGEIVEQLVHASRLSNIRNVVFMGM-GE-PLNNYAALVEAVRIMTGL-PFQVSPKRITVSTVG--IVHAI--NKFHS 216 (375)
Q Consensus 144 ~lt~~ei~~qi~~~~~~~~i~~Ivf~Gm-GE-Plln~~~l~~~i~~l~~~-g~~i~~~~itisTnG--~~~~i--~~l~~ 216 (375)
.++.+.+-..+..... .++++|++.|. || |+|..++-.++++...+. + +...+.+-|.+ +...+ -+.++
T Consensus 25 ~iD~~~l~~lv~~li~-~Gv~gl~v~GtTGE~~~Ls~~Er~~v~~~~~~~~~---grvpviaGvg~~~t~~ai~la~~A~ 100 (309)
T 3fkr_A 25 DLDLASQKRAVDFMID-AGSDGLCILANFSEQFAITDDERDVLTRTILEHVA---GRVPVIVTTSHYSTQVCAARSLRAQ 100 (309)
T ss_dssp SBCHHHHHHHHHHHHH-TTCSCEEESSGGGTGGGSCHHHHHHHHHHHHHHHT---TSSCEEEECCCSSHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHH-cCCCEEEECccccCcccCCHHHHHHHHHHHHHHhC---CCCcEEEecCCchHHHHHHHHHHHH
Confidence 4566666655555443 57899999885 88 788887777777666543 2 11335545433 33322 23344
Q ss_pred hCCCceEEEEecCCCHHHHhhhcCCCCCCCHHHHHHHHHHHHHhcCCcEEE-EEEeeCCCCCCHHHHHHHHH
Q 017203 217 DLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFI-EYIMLDGVNDEEQHAHQLGK 287 (375)
Q Consensus 217 ~~~~v~laiSL~a~~~~~r~~i~p~~~~~~~~~vl~~l~~~~~~~g~~v~i-~~vli~gvND~~e~~~~L~~ 287 (375)
... .+-.+.+ .|- |... .+.+-+.+.+-.+......+.++.+ +++. .|++-+++.+.+|++
T Consensus 101 ~~G-adavlv~-~Py---y~~~----~~~s~~~l~~~f~~va~a~~lPiilYn~P~-tg~~l~~~~~~~La~ 162 (309)
T 3fkr_A 101 QLG-AAMVMAM-PPY---HGAT----FRVPEAQIFEFYARVSDAIAIPIMVQDAPA-SGTALSAPFLARMAR 162 (309)
T ss_dssp HTT-CSEEEEC-CSC---BTTT----BCCCHHHHHHHHHHHHHHCSSCEEEEECGG-GCCCCCHHHHHHHHH
T ss_pred HcC-CCEEEEc-CCC---CccC----CCCCHHHHHHHHHHHHHhcCCCEEEEeCCC-CCCCCCHHHHHHHHh
Confidence 432 3433322 110 0000 0224567777776666777787654 4443 588888777666664
No 31
>3e02_A Uncharacterized protein DUF849; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.90A {Burkholderia xenovorans LB400}
Probab=40.89 E-value=2.2e+02 Score=26.33 Aligned_cols=157 Identities=10% Similarity=0.095 Sum_probs=86.0
Q ss_pred cCCCHHHHHHHHHHhhhh-CCcceEEEEe--CCCcccCHHHHHHHHHHhhCC-CCCCCCCeEEEEeCCchh--hHHHHh-
Q 017203 143 SNLSSGEIVEQLVHASRL-SNIRNVVFMG--MGEPLNNYAALVEAVRIMTGL-PFQVSPKRITVSTVGIVH--AINKFH- 215 (375)
Q Consensus 143 r~lt~~ei~~qi~~~~~~-~~i~~Ivf~G--mGEPlln~~~l~~~i~~l~~~-g~~i~~~~itisTnG~~~--~i~~l~- 215 (375)
-.+|++||+++.....+. ..+-++..=. -|.|++.++.+.+++..+++. . .-|.++|-|... .-++++
T Consensus 27 lPvTpeEia~~A~~~~~AGAaivHlHvRdp~dG~ps~d~~~~~e~~~~IR~~~d-----~iI~~TTgg~~~~~~eerla~ 101 (311)
T 3e02_A 27 LPITPEEIVKEGVAAAEAGAAMLHLHARDPLNGRPSQDPDLFMRFLPQLKERTD-----AILNITTGGGLGMSLDERLAP 101 (311)
T ss_dssp SCCSHHHHHHHHHHHHHHTCSEEEECEECTTTCCEECCHHHHTTTHHHHHHHCC-----CEEEECSSCSTTCCHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCcEEEEeecCCCCCCcCCCHHHHHHHHHHHHHhCC-----cEEEECCCCCCCCCHHHHHHH
Confidence 458999999998875542 2344454444 388999988888888888764 3 347777876431 112332
Q ss_pred --hhCCCceEEEEecCCC-----------------HHH-----HhhhcCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEEe
Q 017203 216 --SDLPGLNLAVSLHAPV-----------------QDV-----RCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIM 271 (375)
Q Consensus 216 --~~~~~v~laiSL~a~~-----------------~~~-----r~~i~p~~~~~~~~~vl~~l~~~~~~~g~~v~i~~vl 271 (375)
...|. ...+++-+.+ +.. ++.++ ..+.+.+.+.+ ..+.+.|.+..++.-
T Consensus 102 ~~~~~Pe-~aSln~gs~Nf~~~~~~~~~~~~~~~~e~~~~~~~~d~v~----~n~~~~i~~~~-~~~~e~Gi~pE~e~f- 174 (311)
T 3e02_A 102 ARAARPE-VASMNMGSLNFNISQAAAKFDTFKFDWERPYLAGTRDFIL----SNTFSQIERGM-TELGASGTRFEFECY- 174 (311)
T ss_dssp HHHHCCS-EEEEECSCEECBCGGGGGGCSCCSSTTHHHHHHHGGGCEE----CCCHHHHHHHH-HHHHTTTCEEEEEEC-
T ss_pred HHhcCCC-eeeecCCCceeccccchhhccccccccchhhcccCCCcee----cCCHHHHHHHH-HHHHHcCCeEEEEEE-
Confidence 32442 1223321111 000 11121 12455555555 445677777766643
Q ss_pred eCCCCCCHHHHHHHHHHHhcC--C--CEEEEeecCCCCCCCCCCCCcHHHHHHHH
Q 017203 272 LDGVNDEEQHAHQLGKLLETF--Q--VVVNLIPFNPIGSVSQFRTSSDDKVSSFQ 322 (375)
Q Consensus 272 i~gvND~~e~~~~L~~~l~~~--~--~~vnLip~np~~~~~~~~~~s~e~i~~f~ 322 (375)
+..++..+..|++.- . ..+++.-=.+. . .+++.+.+..+.
T Consensus 175 ------d~g~l~~~~~l~~~Gl~~~p~~~~~vlGv~~----g-~~~~~~~L~~~~ 218 (311)
T 3e02_A 175 ------DVGHLYNLAHFVDRKLVEPPFFLQCVFGILG----G-IGADPENLLHMR 218 (311)
T ss_dssp ------SHHHHHHHHHHHHTTSSCSCEEEEEEECCBT----S-CCSCHHHHHHHH
T ss_pred ------cHHHHHHHHHHHHcCCCCCCeEEEEEecCCC----C-CCCCHHHHHHHH
Confidence 567888888877641 1 23444321111 1 255677777777
No 32
>3tak_A DHDPS, dihydrodipicolinate synthase; TIM barrel, lysine biosynthesis, pyruvate, lyase; 1.42A {Acinetobacter baumannii} PDB: 3pud_A* 3pue_A* 3pul_A 3rk8_A 3tce_A* 3tdf_A 3u8g_A 3uqn_A 4dxv_A
Probab=40.74 E-value=1.4e+02 Score=27.03 Aligned_cols=131 Identities=12% Similarity=0.109 Sum_probs=0.0
Q ss_pred cCCCHHHHHHHHHHhhhhCCcceEEEEeC-CC-cccCHHHHHHHHHHhhCC-CCCCCCCeEEEEeCCchh--hHHHHhhh
Q 017203 143 SNLSSGEIVEQLVHASRLSNIRNVVFMGM-GE-PLNNYAALVEAVRIMTGL-PFQVSPKRITVSTVGIVH--AINKFHSD 217 (375)
Q Consensus 143 r~lt~~ei~~qi~~~~~~~~i~~Ivf~Gm-GE-Plln~~~l~~~i~~l~~~-g~~i~~~~itisTnG~~~--~i~~l~~~ 217 (375)
..++.+.+...+..... .++++|++.|. || |+|..++-.++++...+. +-.++ .-+.+.+|.+.. ..-+.++.
T Consensus 17 g~iD~~~l~~lv~~li~-~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~gr~p-viaGvg~~~t~~ai~la~~a~~ 94 (291)
T 3tak_A 17 GGVDWKSLEKLVEWHIE-QGTNSIVAVGTTGEASTLSMEEHTQVIKEIIRVANKRIP-IIAGTGANSTREAIELTKAAKD 94 (291)
T ss_dssp SCBCHHHHHHHHHHHHH-HTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSC-EEEECCCSSHHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHHH-CCCCEEEECccccccccCCHHHHHHHHHHHHHHhCCCCe-EEEeCCCCCHHHHHHHHHHHHh
Q ss_pred CCCceEEEEecCCCHHHHhhhcCCCCCCCHHHHHHHHHHHHHhcCCc-EEEEEEeeCCCCCCHHHHHHHHH
Q 017203 218 LPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQK-IFIEYIMLDGVNDEEQHAHQLGK 287 (375)
Q Consensus 218 ~~~v~laiSL~a~~~~~r~~i~p~~~~~~~~~vl~~l~~~~~~~g~~-v~i~~vli~gvND~~e~~~~L~~ 287 (375)
..-..+.+ +.|.-.+.+-+.+.+-.+......+.+ +..+++-.-|++-+.+.+.+|++
T Consensus 95 ~Gadavlv------------~~P~y~~~~~~~l~~~f~~ia~a~~lPiilYn~P~~tg~~l~~~~~~~La~ 153 (291)
T 3tak_A 95 LGADAALL------------VTPYYNKPTQEGLYQHYKAIAEAVELPLILYNVPGRTGVDLSNDTAVRLAE 153 (291)
T ss_dssp HTCSEEEE------------ECCCSSCCCHHHHHHHHHHHHHHCCSCEEEEECHHHHSCCCCHHHHHHHTT
T ss_pred cCCCEEEE------------cCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEecccccCCCCCHHHHHHHHc
No 33
>3dz1_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2, structural genomics; 1.87A {Rhodopseudomonas palustris} SCOP: c.1.10.0
Probab=40.67 E-value=1.6e+02 Score=27.06 Aligned_cols=127 Identities=11% Similarity=0.078 Sum_probs=71.2
Q ss_pred CCCHHHHHHHHHHhhhhCCcceEEEEeC-CC-cccCHHHHHHHHHHhhCCCCCCCCCeEEEEeCC--chhhH--HHHhhh
Q 017203 144 NLSSGEIVEQLVHASRLSNIRNVVFMGM-GE-PLNNYAALVEAVRIMTGLPFQVSPKRITVSTVG--IVHAI--NKFHSD 217 (375)
Q Consensus 144 ~lt~~ei~~qi~~~~~~~~i~~Ivf~Gm-GE-Plln~~~l~~~i~~l~~~g~~i~~~~itisTnG--~~~~i--~~l~~~ 217 (375)
.++.+.+...+..... .++++|++.|. || |+|..++-.++++.+.+.. +...+.+-|.+ +...+ -+.++.
T Consensus 25 ~iD~~~l~~lv~~li~-~Gv~Gl~v~GtTGE~~~Lt~~Er~~v~~~~v~~~---grvpViaGvg~~~t~~ai~la~~A~~ 100 (313)
T 3dz1_A 25 KIDDVSIDRLTDFYAE-VGCEGVTVLGILGEAPKLDAAEAEAVATRFIKRA---KSMQVIVGVSAPGFAAMRRLARLSMD 100 (313)
T ss_dssp CBCHHHHHHHHHHHHH-TTCSEEEESTGGGTGGGSCHHHHHHHHHHHHHHC---TTSEEEEECCCSSHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHH-CCCCEEEeCccCcChhhCCHHHHHHHHHHHHHHc---CCCcEEEecCCCCHHHHHHHHHHHHH
Confidence 4666666666655544 57899999885 88 7788777777777665442 12345555443 32222 233333
Q ss_pred CCCceEEEEecCCCHHHHhhhcCCCCCCCHHHHHHHHHHHHHhcC--CcEEE-EEEeeCCCCCCHHHHHHHHH
Q 017203 218 LPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQ--QKIFI-EYIMLDGVNDEEQHAHQLGK 287 (375)
Q Consensus 218 ~~~v~laiSL~a~~~~~r~~i~p~~~~~~~~~vl~~l~~~~~~~g--~~v~i-~~vli~gvND~~e~~~~L~~ 287 (375)
.. .+-.+.+ .+. + ..+-+.+.+-.+......+ .++.+ +++-.-|++-+++.+.+|++
T Consensus 101 ~G-adavlv~-~P~----------~-~~s~~~l~~~f~~va~a~~~~lPiilYn~P~~tg~~l~~~~~~~La~ 160 (313)
T 3dz1_A 101 AG-AAGVMIA-PPP----------S-LRTDEQITTYFRQATEAIGDDVPWVLQDYPLTLSVVMTPKVIRQIVM 160 (313)
T ss_dssp HT-CSEEEEC-CCT----------T-CCSHHHHHHHHHHHHHHHCTTSCEEEEECHHHHCCCCCHHHHHHHHH
T ss_pred cC-CCEEEEC-CCC----------C-CCCHHHHHHHHHHHHHhCCCCCcEEEEeCccccCcCCCHHHHHHHHH
Confidence 22 3332222 111 1 1245677777766666666 77654 44444477777776666654
No 34
>3m5v_A DHDPS, dihydrodipicolinate synthase; TIM barrel, csgid, amino-acid biosynthesis, diaminopimelate biosynthesis, lyase, lysine biosynthesis; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.1.10.0 PDB: 3ler_A*
Probab=40.50 E-value=2.1e+02 Score=26.00 Aligned_cols=130 Identities=13% Similarity=0.102 Sum_probs=70.3
Q ss_pred CCCHHHHHHHHHHhhhhCCcceEEEEeC-CC-cccCHHHHHHHHHHhhCC-CCCCCCCeEEEEeCC--chhhH--HHHhh
Q 017203 144 NLSSGEIVEQLVHASRLSNIRNVVFMGM-GE-PLNNYAALVEAVRIMTGL-PFQVSPKRITVSTVG--IVHAI--NKFHS 216 (375)
Q Consensus 144 ~lt~~ei~~qi~~~~~~~~i~~Ivf~Gm-GE-Plln~~~l~~~i~~l~~~-g~~i~~~~itisTnG--~~~~i--~~l~~ 216 (375)
.++.+.+...+..... .++++|++.|. || |+|..++-.++++...+. +- ....+-+.|.+ +...+ -+.++
T Consensus 24 ~iD~~~l~~lv~~li~-~Gv~gl~v~GttGE~~~Ls~~Er~~v~~~~~~~~~g--~rvpviaGvg~~~t~~ai~la~~a~ 100 (301)
T 3m5v_A 24 KVDEQSYARLIKRQIE-NGIDAVVPVGTTGESATLTHEEHRTCIEIAVETCKG--TKVKVLAGAGSNATHEAVGLAKFAK 100 (301)
T ss_dssp EECHHHHHHHHHHHHH-TTCCEEECSSTTTTGGGSCHHHHHHHHHHHHHHHTT--SSCEEEEECCCSSHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH-cCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCC--CCCeEEEeCCCCCHHHHHHHHHHHH
Confidence 3555555555555443 57899999885 88 888877767777666544 21 01345444443 32222 23333
Q ss_pred hCCCceEEEEecCCCHHHHhhhcCCCCCCCHHHHHHHHHHHHHhcCCcEEE-EEEeeCCCCCCHHHHHHHHHH
Q 017203 217 DLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFI-EYIMLDGVNDEEQHAHQLGKL 288 (375)
Q Consensus 217 ~~~~v~laiSL~a~~~~~r~~i~p~~~~~~~~~vl~~l~~~~~~~g~~v~i-~~vli~gvND~~e~~~~L~~~ 288 (375)
... .+-.+.+ .|. -.+.+-+.+.+-.+......+.++.+ +++-.-|++-+++.+.+|++.
T Consensus 101 ~~G-adavlv~-~P~----------y~~~s~~~l~~~f~~va~a~~lPiilYn~P~~tg~~l~~~~~~~La~~ 161 (301)
T 3m5v_A 101 EHG-ADGILSV-APY----------YNKPTQQGLYEHYKAIAQSVDIPVLLYNVPGRTGCEISTDTIIKLFRD 161 (301)
T ss_dssp HTT-CSEEEEE-CCC----------SSCCCHHHHHHHHHHHHHHCSSCEEEEECHHHHSCCCCHHHHHHHHHH
T ss_pred HcC-CCEEEEc-CCC----------CCCCCHHHHHHHHHHHHHhCCCCEEEEeCchhhCcCCCHHHHHHHHhc
Confidence 332 3422222 110 00123456666666666666777654 333333777788877777764
No 35
>2wul_A Glutaredoxin related protein 5; chromosome 14 open reading frame 87, oxidoreductase, thiored family, GLRX5, FLB4739; HET: GSH; 2.40A {Homo sapiens}
Probab=40.46 E-value=29 Score=27.52 Aligned_cols=21 Identities=10% Similarity=0.246 Sum_probs=15.6
Q ss_pred ceEEEEeecCCCCCcCccccCC
Q 017203 116 RSTLCISSQVGCKMGCNFCATG 137 (375)
Q Consensus 116 r~tl~vssq~GCnl~C~fC~~~ 137 (375)
..++|.-++..||. |+||...
T Consensus 21 ~VvvF~Kgt~~~P~-C~fc~~a 41 (118)
T 2wul_A 21 KVVVFLKGTPEQPQ-CGFSNAV 41 (118)
T ss_dssp SEEEEESBCSSSBS-SHHHHHH
T ss_pred CEEEEEcCCCCCCC-CHHHHHH
Confidence 47788766677775 9999763
No 36
>3ewb_X 2-isopropylmalate synthase; LEUA, structural genomics, unknown function, amino-acid biosynthesis; 2.10A {Listeria monocytogenes str}
Probab=40.10 E-value=2.2e+02 Score=25.95 Aligned_cols=205 Identities=9% Similarity=0.115 Sum_probs=102.1
Q ss_pred ccCCCHHHHHHHHHHhhhhCCcceEEEEeCCCcccCHHHHHHHHHHhhCCCCCCCCCeEEEEeCCchhhHHHHhhh---C
Q 017203 142 KSNLSSGEIVEQLVHASRLSNIRNVVFMGMGEPLNNYAALVEAVRIMTGLPFQVSPKRITVSTVGIVHAINKFHSD---L 218 (375)
Q Consensus 142 ~r~lt~~ei~~qi~~~~~~~~i~~Ivf~GmGEPlln~~~l~~~i~~l~~~g~~i~~~~itisTnG~~~~i~~l~~~---~ 218 (375)
...++.++.++.+....+ .+++.|-+.. |-.+++.. +.++.+.+.. ...+++.-+-+....+++..+. .
T Consensus 21 ~~~~~~~~K~~i~~~L~~-~Gv~~IE~g~---p~~~~~d~-e~v~~i~~~~---~~~~i~~l~~~~~~di~~a~~~~~~a 92 (293)
T 3ewb_X 21 GVNFDVKEKIQIALQLEK-LGIDVIEAGF---PISSPGDF-ECVKAIAKAI---KHCSVTGLARCVEGDIDRAEEALKDA 92 (293)
T ss_dssp --CCCHHHHHHHHHHHHH-HTCSEEEEEC---GGGCHHHH-HHHHHHHHHC---CSSEEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCCCHHHHHHHHHHHHH-cCCCEEEEeC---CCCCccHH-HHHHHHHHhc---CCCEEEEEecCCHHHHHHHHHHHhhc
Confidence 456888888877776554 3567666543 77665332 2233333221 1134443332222234443332 1
Q ss_pred CCceEEEEecCCCHHHHhhhcCCCCCCCHHHHHHHHH---HHHHhcCCcEEEEEEeeCCCCCCHHHHHHHHHHHhcCCCE
Q 017203 219 PGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALK---EYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVV 295 (375)
Q Consensus 219 ~~v~laiSL~a~~~~~r~~i~p~~~~~~~~~vl~~l~---~~~~~~g~~v~i~~vli~gvND~~e~~~~L~~~l~~~~~~ 295 (375)
....+.+.+.+.+-..+..+ +.+.+++++.++ +++++.|..|.+... ..--.+++.+.++++.+.+.|+.
T Consensus 93 g~~~v~i~~~~Sd~~~~~nl-----~~s~~e~l~~~~~~v~~a~~~g~~v~~~~~--d~~~~~~~~~~~~~~~~~~~G~~ 165 (293)
T 3ewb_X 93 VSPQIHIFLATSDVHMEYKL-----KMSRAEVLASIKHHISYARQKFDVVQFSPE--DATRSDRAFLIEAVQTAIDAGAT 165 (293)
T ss_dssp SSEEEEEEEECSHHHHHHTT-----CCCHHHHHHHHHHHHHHHHTTCSCEEEEEE--TGGGSCHHHHHHHHHHHHHTTCC
T ss_pred CCCEEEEEecCcHHHHHHHh-----CCCHHHHHHHHHHHHHHHHhCCCEEEEEec--cCCCCCHHHHHHHHHHHHHcCCC
Confidence 12235554433332222222 345566555544 455667777765332 22123577888899988888875
Q ss_pred -EEEeecCCCCCCCCCCCCcHHHHHHHHHHHHhcCC------ceEEeccCCCcchh-------cccchhhccccCccCCC
Q 017203 296 -VNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYN------IRTTVRKQMGQDIS-------GACGQLVVNLPDKISAK 361 (375)
Q Consensus 296 -vnLip~np~~~~~~~~~~s~e~i~~f~~~l~~~~G------i~v~vR~~~g~di~-------aaCGql~~~~~~~~~~~ 361 (375)
|+| -.+ .++ ..+.++.++.+.+++..+ +.+..-..+|.-+. ++|.++-....+-+
T Consensus 166 ~i~l---~DT---~G~--~~P~~v~~lv~~l~~~~~~~~~~~l~~H~Hnd~Gla~AN~laA~~aGa~~vd~sv~GlG--- 234 (293)
T 3ewb_X 166 VINI---PDT---VGY--TNPTEFGQLFQDLRREIKQFDDIIFASHCHDDLGMATANALAAIENGARRVEGTINGIG--- 234 (293)
T ss_dssp EEEE---ECS---SSC--CCHHHHHHHHHHHHHHCTTGGGSEEEEECBCTTSCHHHHHHHHHHTTCCEEEEBGGGCC---
T ss_pred EEEe---cCC---CCC--CCHHHHHHHHHHHHHhcCCccCceEEEEeCCCcChHHHHHHHHHHhCCCEEEeeccccc---
Confidence 444 222 112 234566666666653343 45666677776543 45555443332222
Q ss_pred CCCCCCCchhh
Q 017203 362 STPPVTDIEDL 372 (375)
Q Consensus 362 ~~~~~~~~~~~ 372 (375)
...+--++||+
T Consensus 235 eraGN~~~E~v 245 (293)
T 3ewb_X 235 ERAGNTALEEV 245 (293)
T ss_dssp TTTCBCBHHHH
T ss_pred cccccHhHHHH
Confidence 23333455655
No 37
>2nuw_A 2-keto-3-deoxygluconate/2-keto-3-deoxy-6-phospho aldolase; TIM barrel, lyase; 1.80A {Sulfolobus acidocaldarius dsm 639} PDB: 2nux_A 2nuy_A
Probab=38.31 E-value=2.3e+02 Score=25.65 Aligned_cols=127 Identities=13% Similarity=0.166 Sum_probs=0.0
Q ss_pred cCCCHHHHHHHHHHhhhhCCcceEEEEeC-CC-cccCHHHHHHHHHHhhCCCCCCCCCeEEEEeCCchh--hHHHHhhhC
Q 017203 143 SNLSSGEIVEQLVHASRLSNIRNVVFMGM-GE-PLNNYAALVEAVRIMTGLPFQVSPKRITVSTVGIVH--AINKFHSDL 218 (375)
Q Consensus 143 r~lt~~ei~~qi~~~~~~~~i~~Ivf~Gm-GE-Plln~~~l~~~i~~l~~~g~~i~~~~itisTnG~~~--~i~~l~~~~ 218 (375)
..++.+.+...+..... .++++|++.|. || |+|..++-.++++...+..-+ .-+.+.+|.+.. ..-+.++..
T Consensus 15 g~iD~~~l~~lv~~li~-~Gv~gl~v~GtTGE~~~Ls~eEr~~v~~~~~~~~~g---ViaGvg~~~t~~ai~la~~A~~~ 90 (288)
T 2nuw_A 15 GKVNVDALKTHAKNLLE-KGIDAIFVNGTTGLGPALSKDEKRQNLNALYDVTHK---LIFQVGSLNLNDVMELVKFSNEM 90 (288)
T ss_dssp SCBCHHHHHHHHHHHHH-TTCCEEEETSTTTTGGGSCHHHHHHHHHHHTTTCSC---EEEECCCSCHHHHHHHHHHHHTS
T ss_pred CCcCHHHHHHHHHHHHH-cCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCC---eEEeeCCCCHHHHHHHHHHHHhc
Q ss_pred CCceEEEEecCCCHHHHhhhcCCCCC-CCHHHHHHHHHHHHHhcCCc-EEEEEEeeCCCCCCHHHHHHH
Q 017203 219 PGLNLAVSLHAPVQDVRCQIMPAARA-FPLEKLMNALKEYQKNSQQK-IFIEYIMLDGVNDEEQHAHQL 285 (375)
Q Consensus 219 ~~v~laiSL~a~~~~~r~~i~p~~~~-~~~~~vl~~l~~~~~~~g~~-v~i~~vli~gvND~~e~~~~L 285 (375)
.-..+.+ +.|.-.+ .+-+.+.+-.+......+.+ +..+++-.-|++-+++.+.+|
T Consensus 91 Gadavlv------------~~P~y~~~~s~~~l~~~f~~va~a~~lPiilYn~P~~tg~~l~~~~~~~L 147 (288)
T 2nuw_A 91 DILGVSS------------HSPYYFPRLPEKFLAKYYEEIARISSHSLYIYNYPAATGYDIPPSILKSL 147 (288)
T ss_dssp CCSEEEE------------CCCCSSCSCCHHHHHHHHHHHHHHCCSCEEEEECHHHHSCCCCHHHHTTT
T ss_pred CCCEEEE------------cCCcCCCCCCHHHHHHHHHHHHHhcCCCEEEEECchHhCcCCCHHHHhcc
No 38
>3p14_A L-rhamnose isomerase; TIM barrel; 2.51A {Bacillus halodurans} SCOP: c.1.15.2 PDB: 3uu0_A 3uva_A 3uxi_A
Probab=36.98 E-value=1e+02 Score=30.00 Aligned_cols=141 Identities=14% Similarity=0.141 Sum_probs=86.0
Q ss_pred ccCCCHHHHHHHHHHhhhhC-CcceEEEE------eCCCcccC----HHHHHHHHHHhhCCCCCCCCCeEEEEeCCchhh
Q 017203 142 KSNLSSGEIVEQLVHASRLS-NIRNVVFM------GMGEPLNN----YAALVEAVRIMTGLPFQVSPKRITVSTVGIVHA 210 (375)
Q Consensus 142 ~r~lt~~ei~~qi~~~~~~~-~i~~Ivf~------GmGEPlln----~~~l~~~i~~l~~~g~~i~~~~itisTnG~~~~ 210 (375)
++..|++|.++.+..+.... ....|.+- | ||+... ++++.++.+.+++.|+ .+.+++|.+...
T Consensus 71 G~ar~~~E~~~D~~~~~~l~~~~~~v~LH~~y~~~~-~~~v~~d~~~p~~f~~~~~~a~e~GL-----~l~~n~n~Fshp 144 (424)
T 3p14_A 71 GKATTPEELRMDLEKALSLIPGKHRVNLHAIYAETD-GKVVERDQLEPRHFEKWVRWAKRHGL-----GLDFNPTLFSHE 144 (424)
T ss_dssp CCCCSHHHHHHHHHHHHTTSSSCCEEEEEGGGCCCT-TCCCCGGGCCGGGGHHHHHHHHHHTC-----EEEEECCCSSSG
T ss_pred CCCCCHHHHHHHHHHHHHhcCCCcceecchhhhccC-CCcCCccccChhhHHHHHHHHHHcCC-----ceeeccCCCCCh
Confidence 45678999999988876643 33466666 5 565442 4566777777777784 455777866421
Q ss_pred HHHHhhhCCCceEEEEecCCCHHHHhhhcCCCCCCCHHHHHHHHHHHHHh----cCCcEEEEEEeeCCCC----CCHHHH
Q 017203 211 INKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKN----SQQKIFIEYIMLDGVN----DEEQHA 282 (375)
Q Consensus 211 i~~l~~~~~~v~laiSL~a~~~~~r~~i~p~~~~~~~~~vl~~l~~~~~~----~g~~v~i~~vli~gvN----D~~e~~ 282 (375)
++ ...+|+-+++++.|+.- ++.+++++ ++.++ .|.+..+..-+-.|.+ |-....
T Consensus 145 --~y-------k~G~alTnPD~~VR~~A--------I~h~k~~i-dia~~~G~~LGs~~~~~lW~~DG~kdyp~D~~~~~ 206 (424)
T 3p14_A 145 --KA-------KDGLTLAHPDQAIRQFW--------IDHCIASR-KIGEYFGKELETPCLTNIWIPDGYKDTPSDRLTPR 206 (424)
T ss_dssp --GG-------TTSCSTTCSSHHHHHHH--------HHHHHHHH-HHHHHHHHHHSSCEEEEECCCCEESSCCSCSHHHH
T ss_pred --hh-------cCCccCCCCCHHHHHHH--------HHHHHHHH-HHHHHHHHhcCCCeeEEEeCCCCCcCCCCCHHHHH
Confidence 11 11245678999999875 46666666 34444 5666344333335666 777777
Q ss_pred HHHHHHHhcCC-----CE--EEEeecCCCCC
Q 017203 283 HQLGKLLETFQ-----VV--VNLIPFNPIGS 306 (375)
Q Consensus 283 ~~L~~~l~~~~-----~~--vnLip~np~~~ 306 (375)
+.+.+.+..+. .. .-++-|-|.++
T Consensus 207 ~rl~esL~eI~~~~~d~~~~r~aIE~KpfEP 237 (424)
T 3p14_A 207 KRLKESLDQIFAAEINEAYNLDAVESKLFGI 237 (424)
T ss_dssp HHHHHHHHHHTCSCCCTTTEEEEEECCSCBT
T ss_pred HHHHHHHHHHHhhccCCcCceEEEecCCCCC
Confidence 77777766442 11 34567777654
No 39
>3si9_A DHDPS, dihydrodipicolinate synthase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, TIM barrel; 2.10A {Bartonella henselae}
Probab=36.71 E-value=2.5e+02 Score=25.77 Aligned_cols=128 Identities=11% Similarity=0.096 Sum_probs=67.3
Q ss_pred CCCHHHHHHHHHHhhhhCCcceEEEEeC-CC-cccCHHHHHHHHHHhhCC-CCCCCCCeEEEEe--CCchhhH--HHHhh
Q 017203 144 NLSSGEIVEQLVHASRLSNIRNVVFMGM-GE-PLNNYAALVEAVRIMTGL-PFQVSPKRITVST--VGIVHAI--NKFHS 216 (375)
Q Consensus 144 ~lt~~ei~~qi~~~~~~~~i~~Ivf~Gm-GE-Plln~~~l~~~i~~l~~~-g~~i~~~~itisT--nG~~~~i--~~l~~ 216 (375)
.++.+.+...+..... .++++|++.|. || |+|..++-.++++...+. +-. ..+-+-| |.+...+ -+.++
T Consensus 39 ~iD~~~l~~li~~li~-~Gv~Gl~v~GtTGE~~~Ls~~Er~~v~~~~v~~~~gr---vpViaGvg~~st~~ai~la~~A~ 114 (315)
T 3si9_A 39 AIDEKAFCNFVEWQIT-QGINGVSPVGTTGESPTLTHEEHKRIIELCVEQVAKR---VPVVAGAGSNSTSEAVELAKHAE 114 (315)
T ss_dssp CBCHHHHHHHHHHHHH-TTCSEEECSSTTTTGGGSCHHHHHHHHHHHHHHHTTS---SCBEEECCCSSHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHH-cCCCEEEeCccccCccccCHHHHHHHHHHHHHHhCCC---CcEEEeCCCCCHHHHHHHHHHHH
Confidence 4566666665555443 47899998885 77 566777666666665543 211 2343343 4333322 23344
Q ss_pred hCCCceEEEEecCCCHHHHhhhcCCCCCCCHHHHHHHHHHHHHhcCCcEEE-EEEeeCCCCCCHHHHHHHHH
Q 017203 217 DLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFI-EYIMLDGVNDEEQHAHQLGK 287 (375)
Q Consensus 217 ~~~~v~laiSL~a~~~~~r~~i~p~~~~~~~~~vl~~l~~~~~~~g~~v~i-~~vli~gvND~~e~~~~L~~ 287 (375)
... .+-.+.+ .|. + .+.+-+.+.+-.+......+.++.+ +++-.-|++-+++.+.+|++
T Consensus 115 ~~G-adavlv~-~P~------y----~~~~~~~l~~~f~~va~a~~lPiilYn~P~~tg~~l~~~~~~~La~ 174 (315)
T 3si9_A 115 KAG-ADAVLVV-TPY------Y----NRPNQRGLYTHFSSIAKAISIPIIIYNIPSRSVIDMAVETMRDLCR 174 (315)
T ss_dssp HTT-CSEEEEE-CCC------S----SCCCHHHHHHHHHHHHHHCSSCEEEEECHHHHSCCCCHHHHHHHHH
T ss_pred hcC-CCEEEEC-CCC------C----CCCCHHHHHHHHHHHHHcCCCCEEEEeCchhhCCCCCHHHHHHHHh
Confidence 432 3422222 110 0 0123456666666666666777654 33333367777777666664
No 40
>3l21_A DHDPS, dihydrodipicolinate synthase; DAPA, dimer, RV2753C, lysine biosynthesis, amino-acid biosynthesis, diaminopimelate biosynthesis; HET: KPI CME; 2.10A {Mycobacterium tuberculosis} SCOP: c.1.10.1 PDB: 1xxx_A
Probab=36.60 E-value=2.5e+02 Score=25.63 Aligned_cols=127 Identities=15% Similarity=0.165 Sum_probs=70.4
Q ss_pred CCCHHHHHHHHHHhhhhCCcceEEEEeC-CC-cccCHHHHHHHHHHhhCC-CCCCCCCeEEEEeCC--chhhH--HHHhh
Q 017203 144 NLSSGEIVEQLVHASRLSNIRNVVFMGM-GE-PLNNYAALVEAVRIMTGL-PFQVSPKRITVSTVG--IVHAI--NKFHS 216 (375)
Q Consensus 144 ~lt~~ei~~qi~~~~~~~~i~~Ivf~Gm-GE-Plln~~~l~~~i~~l~~~-g~~i~~~~itisTnG--~~~~i--~~l~~ 216 (375)
.++.+.+...+..... .++++|++.|. || |+|..++-.++++...+. + +...+-+.+.+ +...+ -+.++
T Consensus 32 ~iD~~~l~~lv~~li~-~Gv~gi~v~GttGE~~~Lt~~Er~~v~~~~~~~~~---grvpviaGvg~~~t~~ai~la~~a~ 107 (304)
T 3l21_A 32 SLDTATAARLANHLVD-QGCDGLVVSGTTGESPTTTDGEKIELLRAVLEAVG---DRARVIAGAGTYDTAHSIRLAKACA 107 (304)
T ss_dssp CBCHHHHHHHHHHHHH-TTCSEEEESSTTTTGGGSCHHHHHHHHHHHHHHHT---TTSEEEEECCCSCHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHH-cCCCEEEeCccccchhhCCHHHHHHHHHHHHHHhC---CCCeEEEeCCCCCHHHHHHHHHHHH
Confidence 4666666666655544 47899999886 89 888888777777776554 2 11345555433 32222 23333
Q ss_pred hCCCceEEEEecCCCHHHHhhhcCCCCCCCHHHHHHHHHHHHHhcCCcEEE-EEEeeCCCCCCHHHHHHHH
Q 017203 217 DLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFI-EYIMLDGVNDEEQHAHQLG 286 (375)
Q Consensus 217 ~~~~v~laiSL~a~~~~~r~~i~p~~~~~~~~~vl~~l~~~~~~~g~~v~i-~~vli~gvND~~e~~~~L~ 286 (375)
... .+-.+.+ .|. + .+.+-+.+.+-.+......+.++.+ +++-.-|++-+++.+.+|+
T Consensus 108 ~~G-adavlv~-~P~------y----~~~s~~~l~~~f~~va~a~~lPiilYn~P~~tg~~l~~~~~~~La 166 (304)
T 3l21_A 108 AEG-AHGLLVV-TPY------Y----SKPPQRGLQAHFTAVADATELPMLLYDIPGRSAVPIEPDTIRALA 166 (304)
T ss_dssp HHT-CSEEEEE-CCC------S----SCCCHHHHHHHHHHHHTSCSSCEEEEECHHHHSSCCCHHHHHHHH
T ss_pred HcC-CCEEEEC-CCC------C----CCCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCCCCHHHHHHHh
Confidence 322 3322222 111 0 1124566777776666667777654 3332336777777777666
No 41
>3c6c_A 3-keto-5-aminohexanoate cleavage enzyme; DUF849 family protein, TIM beta/alpha-barrel fold, structura genomics; HET: MSE; 1.72A {Ralstonia eutropha}
Probab=34.81 E-value=2.8e+02 Score=25.73 Aligned_cols=161 Identities=9% Similarity=0.011 Sum_probs=87.9
Q ss_pred CCCHHHHHHHHHHhhhh-CCcceEEEEe--CCCcccCHHHHHHHHHHhhCCCCCCCCCeEEEEeC------Cc---h---
Q 017203 144 NLSSGEIVEQLVHASRL-SNIRNVVFMG--MGEPLNNYAALVEAVRIMTGLPFQVSPKRITVSTV------GI---V--- 208 (375)
Q Consensus 144 ~lt~~ei~~qi~~~~~~-~~i~~Ivf~G--mGEPlln~~~l~~~i~~l~~~g~~i~~~~itisTn------G~---~--- 208 (375)
.+|++||+++.....+. ..+-.+..=. -|.|++.++.+.+++..+++..- ..-|.++|. |. .
T Consensus 44 PvTpeEIa~~A~~a~~AGAaivHlHvRd~~~G~ps~d~~~y~e~~~~IR~~~~---d~ii~~TTg~gg~~~g~~~~p~~~ 120 (316)
T 3c6c_A 44 PITPAQIADACVEAAKAGASVAHIHVRDPKTGGGSRDPVLFKEVVDRVRSSGT---DIVLNLTCGLGAFLLPDPEDESKA 120 (316)
T ss_dssp CCSHHHHHHHHHHHHHHTCSEEEECEECTTTCCEECCHHHHHHHHHHHHTTTC---CCEEEEECCCSEEECEETTEEEEE
T ss_pred CCCHHHHHHHHHHHHHcCCcEEEEeecCCCCCCcCCCHHHHHHHHHHHHHHCC---CeEEEeCCCccccccCcccCcccc
Confidence 48999999998876542 2333444433 37899999999999999997521 256888996 32 1
Q ss_pred -------hhHHHHh---hhCCCceEEEEecCCCH--HHHhhhcCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEEeeCCCC
Q 017203 209 -------HAINKFH---SDLPGLNLAVSLHAPVQ--DVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVN 276 (375)
Q Consensus 209 -------~~i~~l~---~~~~~v~laiSL~a~~~--~~r~~i~p~~~~~~~~~vl~~l~~~~~~~g~~v~i~~vli~gvN 276 (375)
..-++++ ...| ....+++-+.+- ...+.++. .+.+.+.+.+ ...++.|.+..++.-
T Consensus 121 ~~~~~l~~~eeR~~~~~~~~P-e~aSl~~Gs~Nf~~~~~~~v~~----n~~~~i~~~~-~~~~e~Gv~pE~e~f------ 188 (316)
T 3c6c_A 121 LPESDVVPVAERVKHLEDCLP-EIASLDITTGNQVEGKLEFVYL----NTTRTLRAMA-RRFQELGIKPELEVF------ 188 (316)
T ss_dssp CTTCEECCHHHHTHHHHHHCC-SEEEEECCCEEEEETTEEEEEC----CCHHHHHHHH-HHHHHHTCEEEEEES------
T ss_pred ccccccCCHHHHHHHHHhcCC-CeEEeccccccccCCCCceeec----CCHHHHHHHH-HHHHHcCCeEEEEEE------
Confidence 1112222 2233 222244333221 10112221 2455555555 445567777766643
Q ss_pred CCHHHHHHHHHHHhcC----CCEEEEeecCCCCCCCCCCCCcHHHHHHHHHHH
Q 017203 277 DEEQHAHQLGKLLETF----QVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKIL 325 (375)
Q Consensus 277 D~~e~~~~L~~~l~~~----~~~vnLip~np~~~~~~~~~~s~e~i~~f~~~l 325 (375)
+..++..+..|++.- +..+++.-=.+. . -+++.+.+..+.+.+
T Consensus 189 -d~g~l~~~~~l~~~Gll~~p~~~~~vlGv~~----g-~p~~p~~L~~~~~~l 235 (316)
T 3c6c_A 189 -SPGDILFGKQLIEEGLIDGVPLFQMVLGVLW----G-APASTETMIYQRNLI 235 (316)
T ss_dssp -SHHHHHHHHHHHHTTCSCSSCEEEEECSCTT----S-CCSCHHHHHHHHTTS
T ss_pred -CHHHHHHHHHHHHcCCCCCCceEEEEEecCC----C-CCCCHHHHHHHHHhc
Confidence 467888877777532 224554321122 1 235666666665443
No 42
>3gx8_A Monothiol glutaredoxin-5, mitochondrial; TRX fold, electron transport, mitochondrion, redox-active center, transit peptide, transport; 1.67A {Saccharomyces cerevisiae}
Probab=34.73 E-value=27 Score=27.53 Aligned_cols=66 Identities=14% Similarity=0.185 Sum_probs=33.9
Q ss_pred CceEEEEeecCCCCCcCccccCCCC-----Ccc------cCCC-HHHHHHHHHHhhhhCCcceEEEEeCCCcccCHHHHH
Q 017203 115 PRSTLCISSQVGCKMGCNFCATGTM-----GFK------SNLS-SGEIVEQLVHASRLSNIRNVVFMGMGEPLNNYAALV 182 (375)
Q Consensus 115 ~r~tl~vssq~GCnl~C~fC~~~~~-----~~~------r~lt-~~ei~~qi~~~~~~~~i~~Ivf~GmGEPlln~~~l~ 182 (375)
.+.++|..++.-|| .|+||..... +.. .++. ..++.+.+...... .---.+|.| |+..--++.+.
T Consensus 16 ~~Vvvfsk~t~~~p-~Cp~C~~ak~lL~~~gv~~~~~~~~dv~~~~~~~~~l~~~sg~-~tvP~vfI~-g~~iGG~d~l~ 92 (121)
T 3gx8_A 16 APVVLFMKGTPEFP-KCGFSRATIGLLGNQGVDPAKFAAYNVLEDPELREGIKEFSEW-PTIPQLYVN-KEFIGGCDVIT 92 (121)
T ss_dssp CSEEEEESBCSSSB-CTTHHHHHHHHHHHHTBCGGGEEEEECTTCHHHHHHHHHHHTC-CSSCEEEET-TEEEESHHHHH
T ss_pred CCEEEEEeccCCCC-CCccHHHHHHHHHHcCCCcceEEEEEecCCHHHHHHHHHHhCC-CCCCeEEEC-CEEEecHHHHH
Confidence 35788876655555 5999976321 111 1222 23444444433321 222355667 77666666554
Q ss_pred H
Q 017203 183 E 183 (375)
Q Consensus 183 ~ 183 (375)
+
T Consensus 93 ~ 93 (121)
T 3gx8_A 93 S 93 (121)
T ss_dssp H
T ss_pred H
Confidence 4
No 43
>3flu_A DHDPS, dihydrodipicolinate synthase; TIM barrel, beta-alpha-barrel, amino-acid biosynthesis, diaminopimelate biosynthesis; 2.00A {Neisseria meningitidis serogroup B} SCOP: c.1.10.0
Probab=32.92 E-value=2.8e+02 Score=25.13 Aligned_cols=131 Identities=10% Similarity=0.064 Sum_probs=0.0
Q ss_pred cCCCHHHHHHHHHHhhhhCCcceEEEEeC-CC-cccCHHHHHHHHHHhhCC-CCCCCCCeEEEEeCCchh--hHHHHhhh
Q 017203 143 SNLSSGEIVEQLVHASRLSNIRNVVFMGM-GE-PLNNYAALVEAVRIMTGL-PFQVSPKRITVSTVGIVH--AINKFHSD 217 (375)
Q Consensus 143 r~lt~~ei~~qi~~~~~~~~i~~Ivf~Gm-GE-Plln~~~l~~~i~~l~~~-g~~i~~~~itisTnG~~~--~i~~l~~~ 217 (375)
..++.+.+...+..... .++++|++.|. || |+|..++-.++++...+. +-.++ .-+.+.+|.+.. ..-+.++.
T Consensus 23 g~iD~~~l~~lv~~li~-~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~grvp-viaGvg~~~t~~ai~la~~a~~ 100 (297)
T 3flu_A 23 GSIHYEQLRDLIDWHIE-NGTDGIVAVGTTGESATLSVEEHTAVIEAVVKHVAKRVP-VIAGTGANNTVEAIALSQAAEK 100 (297)
T ss_dssp SCBCHHHHHHHHHHHHH-TTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSC-EEEECCCSSHHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHHH-cCCCEEEeCccccCcccCCHHHHHHHHHHHHHHhCCCCc-EEEeCCCcCHHHHHHHHHHHHH
Q ss_pred CCCceEEEEecCCCHHHHhhhcCCCCCCCHHHHHHHHHHHHHhcCCc-EEEEEEeeCCCCCCHHHHHHHHH
Q 017203 218 LPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQK-IFIEYIMLDGVNDEEQHAHQLGK 287 (375)
Q Consensus 218 ~~~v~laiSL~a~~~~~r~~i~p~~~~~~~~~vl~~l~~~~~~~g~~-v~i~~vli~gvND~~e~~~~L~~ 287 (375)
..-..+.+ +.|.-.+.+-+.+.+-.+......+.+ +.++++-.-|++-+++.+.+|++
T Consensus 101 ~Gadavlv------------~~P~y~~~~~~~l~~~f~~va~a~~lPiilYn~P~~tg~~l~~~~~~~La~ 159 (297)
T 3flu_A 101 AGADYTLS------------VVPYYNKPSQEGIYQHFKTIAEATSIPMIIYNVPGRTVVSMTNDTILRLAE 159 (297)
T ss_dssp TTCSEEEE------------ECCCSSCCCHHHHHHHHHHHHHHCCSCEEEEECHHHHSSCCCHHHHHHHTT
T ss_pred cCCCEEEE------------CCCCCCCCCHHHHHHHHHHHHHhCCCCEEEEECCchhccCCCHHHHHHHHc
No 44
>3ipz_A Monothiol glutaredoxin-S14, chloroplastic; electron transport, PL redox-active center, transit peptide, transport, oxidoreduc; 2.40A {Arabidopsis thaliana} PDB: 2lku_A
Probab=32.71 E-value=34 Score=26.18 Aligned_cols=67 Identities=19% Similarity=0.302 Sum_probs=34.9
Q ss_pred CceEEEEeecCCCCCcCccccCCCC-----C--c-ccCCC-HHHHHHHHHHhhhhCCcceEEEEeCCCcccCHHHHHHH
Q 017203 115 PRSTLCISSQVGCKMGCNFCATGTM-----G--F-KSNLS-SGEIVEQLVHASRLSNIRNVVFMGMGEPLNNYAALVEA 184 (375)
Q Consensus 115 ~r~tl~vssq~GCnl~C~fC~~~~~-----~--~-~r~lt-~~ei~~qi~~~~~~~~i~~Ivf~GmGEPlln~~~l~~~ 184 (375)
.+.++|..++..+| .|+||..... + + ..++. ..++.+.+........+ -.+|.| |+..--++.+.++
T Consensus 18 ~~Vvvy~k~t~~~p-~Cp~C~~ak~~L~~~gi~~~~~dI~~~~~~~~~l~~~~g~~tv-P~ifi~-g~~iGG~d~l~~l 93 (109)
T 3ipz_A 18 EKVVLFMKGTRDFP-MCGFSNTVVQILKNLNVPFEDVNILENEMLRQGLKEYSNWPTF-PQLYIG-GEFFGGCDITLEA 93 (109)
T ss_dssp SSEEEEESBCSSSB-SSHHHHHHHHHHHHTTCCCEEEEGGGCHHHHHHHHHHHTCSSS-CEEEET-TEEEECHHHHHHH
T ss_pred CCEEEEEecCCCCC-CChhHHHHHHHHHHcCCCcEEEECCCCHHHHHHHHHHHCCCCC-CeEEEC-CEEEeCHHHHHHH
Confidence 45778776555454 7999977321 1 1 11221 23444445443322222 356777 7776667655544
No 45
>3nvt_A 3-deoxy-D-arabino-heptulosonate 7-phosphate synth; bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismat listeria monocytogenes EGD-E; 1.95A {Listeria monocytogenes} PDB: 3tfc_A*
Probab=31.10 E-value=79 Score=30.38 Aligned_cols=59 Identities=10% Similarity=0.183 Sum_probs=45.2
Q ss_pred CCCCCHHHHHHHHHHHhcCCCE-EEEeecCCCCCCCCCCCCcHHHHHHHHHHHHhcCCceEE
Q 017203 274 GVNDEEQHAHQLGKLLETFQVV-VNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTT 334 (375)
Q Consensus 274 gvND~~e~~~~L~~~l~~~~~~-vnLip~np~~~~~~~~~~s~e~i~~f~~~l~~~~Gi~v~ 334 (375)
++| +.+.+.++++.++..|+. |.+..|.|-.....|+.++.+.+..+.++.+ +.|+.+.
T Consensus 151 sve-s~e~a~~~a~~~k~aGa~~vk~q~fkprts~~~f~gl~~egl~~L~~~~~-~~Gl~~~ 210 (385)
T 3nvt_A 151 SVE-SYEQVAAVAESIKAKGLKLIRGGAFKPRTSPYDFQGLGLEGLKILKRVSD-EYGLGVI 210 (385)
T ss_dssp BCC-CHHHHHHHHHHHHHTTCCEEECBSSCCCSSTTSCCCCTHHHHHHHHHHHH-HHTCEEE
T ss_pred CcC-CHHHHHHHHHHHHHcCCCeEEcccccCCCChHhhcCCCHHHHHHHHHHHH-HcCCEEE
Confidence 456 688999999999999876 5566677643223466778899999999998 7899864
No 46
>4dsd_A Putative periplasmic protein; BLIP-like fold, structural genomics, joint center for struct genomics, JCSG, protein structure initiative; 1.75A {Bacteroides ovatus}
Probab=29.04 E-value=96 Score=24.77 Aligned_cols=46 Identities=22% Similarity=0.212 Sum_probs=31.8
Q ss_pred CCCCCCHHHHHHHHhcCCCCCcccceEEeCCCCCeEEEEEEecCCCe
Q 017203 45 EFPSLPSAAYSLLRSKFKPLTSTLHSVVDSSDDVTTKLLVKLQNGGF 91 (375)
Q Consensus 45 ~~~~l~~~~r~~l~~~~~~~~~~~~~~~~s~dg~t~k~l~~~~dg~~ 91 (375)
.+..||+..++.+..+|.-....-+++.. ....+..|-+.+.||..
T Consensus 8 ~~~~LP~~a~~fi~~~Fp~~~i~~ve~e~-~~~~~~~YeV~l~~G~e 53 (129)
T 4dsd_A 8 DMNQLPLPARNFINSNFTKPQVAHIKIDK-DMMESTKYEVVLMDGTE 53 (129)
T ss_dssp CGGGSCHHHHHHHHHHSSSCCEEEEEEEE-CTTSCEEEEEEETTSCE
T ss_pred ChhhCCHHHHHHHHHHCCCCceEEEEEec-CcCCCccEEEEECCCcE
Confidence 35679999999999999865554444322 11212689999999953
No 47
>1vr6_A Phospho-2-dehydro-3-deoxyheptonate aldolase; TM0343, structural genomics, joint center for STRU genomics, JCSG, protein structure initiative; 1.92A {Thermotoga maritima} SCOP: c.1.10.4 PDB: 1rzm_A* 3pg9_A* 3pg8_A*
Probab=28.90 E-value=1.9e+02 Score=27.37 Aligned_cols=67 Identities=10% Similarity=0.127 Sum_probs=49.9
Q ss_pred EEEEeeCCCCCCHHHHHHHHHHHhcCCCE-EEEeecCCCCCCCCCCCCcHHHHHHHHHHHHhcCCceEE
Q 017203 267 IEYIMLDGVNDEEQHAHQLGKLLETFQVV-VNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTT 334 (375)
Q Consensus 267 i~~vli~gvND~~e~~~~L~~~l~~~~~~-vnLip~np~~~~~~~~~~s~e~i~~f~~~l~~~~Gi~v~ 334 (375)
+-.+.=|+.+.+.+.+.++++.++..++. +.+..|.|-.....|+.+..+.+..++++.+ +.|+.+.
T Consensus 107 ~~vIAgpcs~es~e~a~~~a~~~k~aGa~~vr~q~fKprTs~~~f~glg~egl~~l~~~~~-e~Gl~~~ 174 (350)
T 1vr6_A 107 FTIIAGPCSVEGREMLMETAHFLSELGVKVLRGGAYKPRTSPYSFQGLGEKGLEYLREAAD-KYGMYVV 174 (350)
T ss_dssp EEEEEECSBCCCHHHHHHHHHHHHHTTCCEEECBSCCCCCSTTSCCCCTHHHHHHHHHHHH-HHTCEEE
T ss_pred eEEEEeCCCcCCHHHHHHHHHHHHHcCCCeeeeeEEeCCCChHhhcCCCHHHHHHHHHHHH-HcCCcEE
Confidence 33444456788999999999999999876 5556677642222466677899999999988 7999864
No 48
>3db7_A Putative calcium-regulated periplasmic protein; structural genomics, joint center for structural genomics; HET: MSE; 1.40A {Bacteroides thetaiotaomicron} SCOP: d.98.2.1 PDB: 3due_A*
Probab=28.41 E-value=92 Score=24.76 Aligned_cols=46 Identities=20% Similarity=0.231 Sum_probs=33.2
Q ss_pred CCCCCCHHHHHHHHhcCCCCCcccceEEeCCCCCeEEEEEEecCCCeE
Q 017203 45 EFPSLPSAAYSLLRSKFKPLTSTLHSVVDSSDDVTTKLLVKLQNGGFV 92 (375)
Q Consensus 45 ~~~~l~~~~r~~l~~~~~~~~~~~~~~~~s~dg~t~k~l~~~~dg~~v 92 (375)
.+..||+..++.+.++|.-....-+++. +.++ ...|-+.+.||..|
T Consensus 9 ~~~~LP~~a~~fi~~~Fp~~~i~~ve~~-~~~~-~~~YeV~~~~G~ei 54 (127)
T 3db7_A 9 QVTQMPQLAQQFIKQHFSDSKVALAKME-SDFL-YKSYEVIFTNGNKV 54 (127)
T ss_dssp CGGGSCHHHHHHHHHHCTTSCEEEEEEE-EETT-EEEEEEEETTSCEE
T ss_pred ChHHcCHHHHHHHHHHCCCCceEEEEEe-cCCc-cceEEEEECCCcEE
Confidence 4568999999999999986554444432 2344 57899999999643
No 49
>3rmj_A 2-isopropylmalate synthase; LEUA, truncation, neisseria MENI TIM barrel, catalytic domain, dimer, leucine biosynthesis, ketoisovalerate; 1.95A {Neisseria meningitidis}
Probab=28.13 E-value=1.7e+02 Score=27.70 Aligned_cols=85 Identities=16% Similarity=0.205 Sum_probs=0.0
Q ss_pred CCCHHHHHHHHHHhhhh--CCcceEEEEeCCCcccCHHHHHHHHHHhhCCCCCCCCCeEEEE-eCCch------hhHHHH
Q 017203 144 NLSSGEIVEQLVHASRL--SNIRNVVFMGMGEPLNNYAALVEAVRIMTGLPFQVSPKRITVS-TVGIV------HAINKF 214 (375)
Q Consensus 144 ~lt~~ei~~qi~~~~~~--~~i~~Ivf~GmGEPlln~~~l~~~i~~l~~~g~~i~~~~itis-TnG~~------~~i~~l 214 (375)
+.|.+|+++.+...... .....|.|+.+-+.-.+++++.++++.+.+.| ...|.|- |+|+. ..+..+
T Consensus 120 ~~s~~e~l~~~~~~v~~a~~~g~~v~~~~ed~~r~~~~~~~~~~~~~~~~G----a~~i~l~DT~G~~~P~~~~~lv~~l 195 (370)
T 3rmj_A 120 KMKPKQVIEAAVKAVKIAREYTDDVEFSCEDALRSEIDFLAEICGAVIEAG----ATTINIPDTVGYSIPYKTEEFFREL 195 (370)
T ss_dssp CCCHHHHHHHHHHHHHHHTTTCSCEEEEEETGGGSCHHHHHHHHHHHHHHT----CCEEEEECSSSCCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHcCCEEEEecCCCCccCHHHHHHHHHHHHHcC----CCEEEecCccCCcCHHHHHHHHHHH
Q ss_pred hhhCCCce-EEEEecCCCH
Q 017203 215 HSDLPGLN-LAVSLHAPVQ 232 (375)
Q Consensus 215 ~~~~~~v~-laiSL~a~~~ 232 (375)
.+..+..+ +.|++|..++
T Consensus 196 ~~~~~~~~~~~l~~H~Hnd 214 (370)
T 3rmj_A 196 IAKTPNGGKVVWSAHCHND 214 (370)
T ss_dssp HHHSTTGGGSEEEEECBCT
T ss_pred HHhCCCcCceEEEEEeCCC
No 50
>2wem_A Glutaredoxin-related protein 5; chromosome 14 open reading frame 87, Fe/S cluster, oxidoreductase, thioredoxin family, GLRX5, FLB4739, C14ORF87; HET: GTT; 2.40A {Homo sapiens} PDB: 2wul_A*
Probab=27.88 E-value=38 Score=26.57 Aligned_cols=66 Identities=15% Similarity=0.238 Sum_probs=35.5
Q ss_pred ceEEEEeecCCCCCcCccccCCC-----CCc----ccCCC-HHHHHHHHHHhhhhCCcceEEEEeCCCcccCHHHHHHH
Q 017203 116 RSTLCISSQVGCKMGCNFCATGT-----MGF----KSNLS-SGEIVEQLVHASRLSNIRNVVFMGMGEPLNNYAALVEA 184 (375)
Q Consensus 116 r~tl~vssq~GCnl~C~fC~~~~-----~~~----~r~lt-~~ei~~qi~~~~~~~~i~~Ivf~GmGEPlln~~~l~~~ 184 (375)
+.++|..++..|| .|+||...+ .+. ..+++ ..++.+.+...... .---.+|.+ |+..--++.+.++
T Consensus 21 ~Vvvfsk~t~~~p-~Cp~C~~ak~lL~~~gv~~~~~vdV~~d~~~~~~l~~~tg~-~tvP~vfI~-g~~IGG~d~l~~l 96 (118)
T 2wem_A 21 KVVVFLKGTPEQP-QCGFSNAVVQILRLHGVRDYAAYNVLDDPELRQGIKDYSNW-PTIPQVYLN-GEFVGGCDILLQM 96 (118)
T ss_dssp SEEEEESBCSSSB-SSHHHHHHHHHHHHTTCCCCEEEESSSCHHHHHHHHHHHTC-CSSCEEEET-TEEEESHHHHHHH
T ss_pred CEEEEEecCCCCC-ccHHHHHHHHHHHHcCCCCCEEEEcCCCHHHHHHHHHHhCC-CCcCeEEEC-CEEEeChHHHHHH
Confidence 5788876655555 699997631 111 12222 23454555443321 223456777 7777667655543
No 51
>1vs1_A 3-deoxy-7-phosphoheptulonate synthase; (beta/alpha)8 barrel, transferase; HET: PEP; 2.30A {Aeropyrum pernix}
Probab=27.59 E-value=79 Score=28.85 Aligned_cols=63 Identities=6% Similarity=-0.025 Sum_probs=46.7
Q ss_pred eeCCCCCCHHHHHHHHHHHhcCCCE-EEEeecCCCCCCCCCCCCcHHHHHHHHHHHHhcCCceEE
Q 017203 271 MLDGVNDEEQHAHQLGKLLETFQVV-VNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTT 334 (375)
Q Consensus 271 li~gvND~~e~~~~L~~~l~~~~~~-vnLip~np~~~~~~~~~~s~e~i~~f~~~l~~~~Gi~v~ 334 (375)
.=|+.+.+.+.+.++++.++..++. +.+..|.|-.....|+.+..+.+..++++.+ +.|+.+.
T Consensus 43 Agpc~~~~~e~a~~~a~~~k~~ga~~~k~~~~kprts~~~f~g~g~~gl~~l~~~~~-~~Gl~~~ 106 (276)
T 1vs1_A 43 AGPCSVESWEQVREAALAVKEAGAHMLRGGAFKPRTSPYSFQGLGLEGLKLLRRAGD-EAGLPVV 106 (276)
T ss_dssp EECSBCCCHHHHHHHHHHHHHHTCSEEECBSSCCCSSTTSCCCCTHHHHHHHHHHHH-HHTCCEE
T ss_pred EecCCCCCHHHHHHHHHHHHHhCCCEEEeEEEeCCCChhhhcCCCHHHHHHHHHHHH-HcCCcEE
Confidence 3345788999999999999988876 5555676642222366667899999999988 7898763
No 52
>1zco_A 2-dehydro-3-deoxyphosphoheptonate aldolase; arabino-heptulosonate, synthase, shikimate, DAHP, DAH7P, DAH DAH7PS, lyase; HET: PEP; 2.25A {Pyrococcus furiosus}
Probab=27.58 E-value=1.2e+02 Score=27.41 Aligned_cols=60 Identities=12% Similarity=0.193 Sum_probs=43.9
Q ss_pred CCCCCHHHHHHHHHHHhcCCCE-EEEeecCCCCCCCCCCCCcHHHHHHHHHHHHhcCCceEE
Q 017203 274 GVNDEEQHAHQLGKLLETFQVV-VNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTT 334 (375)
Q Consensus 274 gvND~~e~~~~L~~~l~~~~~~-vnLip~np~~~~~~~~~~s~e~i~~f~~~l~~~~Gi~v~ 334 (375)
..|.+.+.+.++++.++..++. |....|.|-.....|+.+..+.+..++++++ +.|+.+.
T Consensus 31 c~~~~~e~a~~~a~~l~~~Ga~~vk~~~fkprts~~~~~g~~~egl~~l~~~~~-~~Gl~~~ 91 (262)
T 1zco_A 31 CSIESREQIMKVAEFLAEVGIKVLRGGAFKPRTSPYSFQGYGEKALRWMREAAD-EYGLVTV 91 (262)
T ss_dssp SBCCCHHHHHHHHHHHHHTTCCEEECBSSCCCSSTTSCCCCTHHHHHHHHHHHH-HHTCEEE
T ss_pred CCCCCHHHHHHHHHHHHHcCCCEEEEEecccCCCcccccCccHHHHHHHHHHHH-HcCCcEE
Confidence 4577899999999999999876 5555666642111344556889999999998 7898863
No 53
>2kl5_A Uncharacterized protein YUTD; structural genomics, protein northeast structural genom consortium (NESG), target SR232, PSI-2; NMR {Bacillus subtilis}
Probab=26.73 E-value=17 Score=28.43 Aligned_cols=9 Identities=33% Similarity=1.184 Sum_probs=7.7
Q ss_pred CCCCcCccc
Q 017203 126 GCKMGCNFC 134 (375)
Q Consensus 126 GCnl~C~fC 134 (375)
-||++|+|=
T Consensus 87 YCNFGCaYF 95 (110)
T 2kl5_A 87 YCNFGCAYF 95 (110)
T ss_dssp SSCSSCCEE
T ss_pred HccCCCceE
Confidence 599999984
No 54
>3ewb_X 2-isopropylmalate synthase; LEUA, structural genomics, unknown function, amino-acid biosynthesis; 2.10A {Listeria monocytogenes str}
Probab=26.18 E-value=2.7e+02 Score=25.26 Aligned_cols=85 Identities=18% Similarity=0.265 Sum_probs=51.7
Q ss_pred CCCHHHHHHHHHHhhhh--CCcceEEEEeCCCcccCHHHHHHHHHHhhCCCCCCCCCeEEE-EeCCch-h-h----HHHH
Q 017203 144 NLSSGEIVEQLVHASRL--SNIRNVVFMGMGEPLNNYAALVEAVRIMTGLPFQVSPKRITV-STVGIV-H-A----INKF 214 (375)
Q Consensus 144 ~lt~~ei~~qi~~~~~~--~~i~~Ivf~GmGEPlln~~~l~~~i~~l~~~g~~i~~~~iti-sTnG~~-~-~----i~~l 214 (375)
+.|.+|.++.+...... ..-..|.|+-+-.+-..++.+.++++.+.+.|. ..|+| +|+|.. | . +..+
T Consensus 113 ~~s~~e~l~~~~~~v~~a~~~g~~v~~~~~d~~~~~~~~~~~~~~~~~~~G~----~~i~l~DT~G~~~P~~v~~lv~~l 188 (293)
T 3ewb_X 113 KMSRAEVLASIKHHISYARQKFDVVQFSPEDATRSDRAFLIEAVQTAIDAGA----TVINIPDTVGYTNPTEFGQLFQDL 188 (293)
T ss_dssp CCCHHHHHHHHHHHHHHHHTTCSCEEEEEETGGGSCHHHHHHHHHHHHHTTC----CEEEEECSSSCCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHhCCCEEEEEeccCCCCCHHHHHHHHHHHHHcCC----CEEEecCCCCCCCHHHHHHHHHHH
Confidence 56788888777654321 111345565544455678889999999987763 34544 699964 4 2 3444
Q ss_pred hhhCCCce-EEEEecCCCH
Q 017203 215 HSDLPGLN-LAVSLHAPVQ 232 (375)
Q Consensus 215 ~~~~~~v~-laiSL~a~~~ 232 (375)
.+..+... +.|++|.-++
T Consensus 189 ~~~~~~~~~~~l~~H~Hnd 207 (293)
T 3ewb_X 189 RREIKQFDDIIFASHCHDD 207 (293)
T ss_dssp HHHCTTGGGSEEEEECBCT
T ss_pred HHhcCCccCceEEEEeCCC
Confidence 55554432 6677777653
No 55
>3v39_A D-alanyl-D-alanine carboxypeptidase; peptidoglycan transpeptidase fold, endopeptidase, serine MOD hepes buffer molecule, hydrolase; HET: PGE; 1.45A {Bdellovibrio bacteriovorus}
Probab=25.32 E-value=63 Score=31.45 Aligned_cols=30 Identities=10% Similarity=0.123 Sum_probs=26.7
Q ss_pred ceEEEEeCCCcccCHHHHHHHHHHhhCCCC
Q 017203 164 RNVVFMGMGEPLNNYAALVEAVRIMTGLPF 193 (375)
Q Consensus 164 ~~Ivf~GmGEPlln~~~l~~~i~~l~~~g~ 193 (375)
..+++.|-|+|++..+.+.++++.+++.|+
T Consensus 68 Gdl~l~G~GDP~l~~~~l~~la~~l~~~Gi 97 (418)
T 3v39_A 68 YDIHIEGSRDPLFGRNMSYFLISELNRMKI 97 (418)
T ss_dssp EEEEEECCCCTTCSHHHHHHHHHHHHHTTC
T ss_pred ceEEEEeCCCCCcCHHHHHHHHHHHHHcCC
Confidence 478899999999999999999999998774
No 56
>2r8w_A AGR_C_1641P; APC7498, dihydrodipicolinate synthase, agrobacterium tumefac C58, structural genomics, PSI-2; HET: MSE; 1.80A {Agrobacterium tumefaciens str}
Probab=25.15 E-value=3.6e+02 Score=24.88 Aligned_cols=131 Identities=7% Similarity=-0.007 Sum_probs=0.0
Q ss_pred cCCCHHHHHHHHHHhhhhCCcceEEEEeC-CCc-ccCHHHHHHHHHHhhCC-CCCCCCCeEEEEeCCchh--hHHHHhhh
Q 017203 143 SNLSSGEIVEQLVHASRLSNIRNVVFMGM-GEP-LNNYAALVEAVRIMTGL-PFQVSPKRITVSTVGIVH--AINKFHSD 217 (375)
Q Consensus 143 r~lt~~ei~~qi~~~~~~~~i~~Ivf~Gm-GEP-lln~~~l~~~i~~l~~~-g~~i~~~~itisTnG~~~--~i~~l~~~ 217 (375)
..++.+.+...+..... .++++|++.|. ||- +|..++-.++++.+.+. +-.++ .-+.+.+|.+.. ...+.++.
T Consensus 50 g~iD~~~l~~lv~~li~-~Gv~Gl~v~GtTGE~~~Ls~eEr~~vi~~~ve~~~grvp-ViaGvg~~st~eai~la~~A~~ 127 (332)
T 2r8w_A 50 GRVDIEAFSALIARLDA-AEVDSVGILGSTGIYMYLTREERRRAIEAAATILRGRRT-LMAGIGALRTDEAVALAKDAEA 127 (332)
T ss_dssp CCBCHHHHHHHHHHHHH-HTCSEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSE-EEEEECCSSHHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHHH-cCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCc-EEEecCCCCHHHHHHHHHHHHh
Q ss_pred CCCceEEEEecCCCHHHHhhhcCCCCCCCHHHHHHHHHHHHHhcCCc-EEEEEEeeCCCCCCHHHHHHHHH
Q 017203 218 LPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQK-IFIEYIMLDGVNDEEQHAHQLGK 287 (375)
Q Consensus 218 ~~~v~laiSL~a~~~~~r~~i~p~~~~~~~~~vl~~l~~~~~~~g~~-v~i~~vli~gvND~~e~~~~L~~ 287 (375)
..-..+.+ +.|.-.+.+-+.+.+-.+......+.+ +.++++-.-|++-+++.+.+|++
T Consensus 128 ~Gadavlv------------~~P~Y~~~s~~~l~~~f~~VA~a~~lPiilYn~P~~tg~~l~~e~~~~La~ 186 (332)
T 2r8w_A 128 AGADALLL------------APVSYTPLTQEEAYHHFAAVAGATALPLAIYNNPTTTRFTFSDELLVRLAY 186 (332)
T ss_dssp HTCSEEEE------------CCCCSSCCCHHHHHHHHHHHHHHCSSCEEEECCHHHHCCCCCHHHHHHHHT
T ss_pred cCCCEEEE------------CCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCccccCcCCCHHHHHHHHc
No 57
>1w5d_A Penicillin-binding protein; D-Ala-D-Ala-carboxypeptidase, peptidoglycan, beta-lactam, hydrolase, peptidoglycan synthesis; 2.1A {Bacillus subtilis} SCOP: e.3.1.3 PDB: 2j9p_A*
Probab=25.10 E-value=66 Score=31.60 Aligned_cols=43 Identities=14% Similarity=0.124 Sum_probs=31.9
Q ss_pred ceEEEEeCCCcccCHHHHHHHHHHhhCCCCCCCCCeEEEEeCC
Q 017203 164 RNVVFMGMGEPLNNYAALVEAVRIMTGLPFQVSPKRITVSTVG 206 (375)
Q Consensus 164 ~~Ivf~GmGEPlln~~~l~~~i~~l~~~g~~i~~~~itisTnG 206 (375)
.++++.|.|+|++..+.+.++++.+++.|+.--.-.+.++++-
T Consensus 89 GdL~l~G~GDPtL~~~~l~~la~~l~~~Gi~~I~G~l~~D~s~ 131 (462)
T 1w5d_A 89 GNLYLKGKGDPTLLPSDFDKMAEILKHSGVKVIKGNLIGDDTW 131 (462)
T ss_dssp SCEEEEECSCTTCCHHHHHHHHHHHHHTTCCEESSCEEEECTT
T ss_pred ceEEEEeCCCCccCHHHHHHHHHHHHHcCCcEEeeeEEEECCc
Confidence 3688888899999999999999999987742111146677654
No 58
>3h5d_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis, amino-ACI biosynthesis, schiff base, cytoplasm, diaminopimelate biosy lyase; HET: MES; 1.99A {Streptococcus pneumoniae}
Probab=24.84 E-value=4e+02 Score=24.31 Aligned_cols=131 Identities=15% Similarity=0.079 Sum_probs=0.0
Q ss_pred cCCCHHHHHHHHHHhhhhCCcceEEEEeC-CC-cccCHHHHHHHHHHhhCC-CCCCCCCeEEEEeCCchh--hHHHHhhh
Q 017203 143 SNLSSGEIVEQLVHASRLSNIRNVVFMGM-GE-PLNNYAALVEAVRIMTGL-PFQVSPKRITVSTVGIVH--AINKFHSD 217 (375)
Q Consensus 143 r~lt~~ei~~qi~~~~~~~~i~~Ivf~Gm-GE-Plln~~~l~~~i~~l~~~-g~~i~~~~itisTnG~~~--~i~~l~~~ 217 (375)
..++.+.+...+..... .++++|++.|. || |+|..++-.++++...+. +-.++ .-+.+.+|.+.. ..-+.++.
T Consensus 23 g~iD~~~l~~lv~~li~-~Gv~Gl~v~GtTGE~~~Ls~~Er~~v~~~~~~~~~grvp-ViaGvg~~~t~~ai~la~~A~~ 100 (311)
T 3h5d_A 23 GSINFDAIPALIEHLLA-HHTDGILLAGTTAESPTLTHDEELELFAAVQKVVNGRVP-LIAGVGTNDTRDSIEFVKEVAE 100 (311)
T ss_dssp SSBCTTHHHHHHHHHHH-TTCCCEEESSTTTTGGGSCHHHHHHHHHHHHHHSCSSSC-EEEECCCSSHHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHHH-cCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCc-EEEeCCCcCHHHHHHHHHHHHh
Q ss_pred CCC-ceEEEEecCCCHHHHhhhcCCCCCCCHHHHHHHHHHHHHhcCCc-EEEEEEeeCCCCCCHHHHHHHHH
Q 017203 218 LPG-LNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQK-IFIEYIMLDGVNDEEQHAHQLGK 287 (375)
Q Consensus 218 ~~~-v~laiSL~a~~~~~r~~i~p~~~~~~~~~vl~~l~~~~~~~g~~-v~i~~vli~gvND~~e~~~~L~~ 287 (375)
... ..+.+ +.|.-.+.+-+.+.+-.+......+.+ +..+++-.-|++-+.+.+.+|++
T Consensus 101 ~Ga~davlv------------~~P~y~~~s~~~l~~~f~~va~a~~lPiilYn~P~~tg~~l~~~~~~~La~ 160 (311)
T 3h5d_A 101 FGGFAAGLA------------IVPYYNKPSQEGMYQHFKAIADASDLPIIIYNIPGRVVVELTPETMLRLAD 160 (311)
T ss_dssp SCCCSEEEE------------ECCCSSCCCHHHHHHHHHHHHHSCSSCEEEEECHHHHSSCCCHHHHHHHHT
T ss_pred cCCCcEEEE------------cCCCCCCCCHHHHHHHHHHHHHhCCCCEEEEecccccCCCCCHHHHHHHhc
No 59
>2rfg_A Dihydrodipicolinate synthase; beta barrel, amino-acid biosynthesis, diaminopimelate biosyn lyase, lysine biosynthesis, schiff base; 1.50A {Hahella chejuensis}
Probab=24.79 E-value=3.8e+02 Score=24.24 Aligned_cols=129 Identities=10% Similarity=0.013 Sum_probs=0.0
Q ss_pred CCHHHHHHHHHHhhhhCCcceEEEEeC-CCc-ccCHHHHHHHHHHhhCC-CCCCCCCeEEEEeCCchh--hHHHHhhhCC
Q 017203 145 LSSGEIVEQLVHASRLSNIRNVVFMGM-GEP-LNNYAALVEAVRIMTGL-PFQVSPKRITVSTVGIVH--AINKFHSDLP 219 (375)
Q Consensus 145 lt~~ei~~qi~~~~~~~~i~~Ivf~Gm-GEP-lln~~~l~~~i~~l~~~-g~~i~~~~itisTnG~~~--~i~~l~~~~~ 219 (375)
++.+.+...+..... .++++|++.|. ||- +|..++-.++++.+.+. +-.++ .-+.+.+|.+.. ...+.++...
T Consensus 18 iD~~~l~~lv~~li~-~Gv~gi~v~GttGE~~~Ls~~Er~~v~~~~~~~~~grvp-viaGvg~~~t~~ai~la~~A~~~G 95 (297)
T 2rfg_A 18 VDEKALAGLVDWQIK-HGAHGLVPVGTTGESPTLTEEEHKRVVALVAEQAQGRVP-VIAGAGSNNPVEAVRYAQHAQQAG 95 (297)
T ss_dssp ECHHHHHHHHHHHHH-TTCSEEECSSGGGTGGGSCHHHHHHHHHHHHHHHTTSSC-BEEECCCSSHHHHHHHHHHHHHHT
T ss_pred cCHHHHHHHHHHHHH-cCCCEEEECccccchhhCCHHHHHHHHHHHHHHhCCCCe-EEEccCCCCHHHHHHHHHHHHhcC
Q ss_pred CceEEEEecCCCHHHHhhhcCCCCCCCHHHHHHHHHHHHHhcCCc-EEEEEEeeCCCCCCHHHHHHHHH
Q 017203 220 GLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQK-IFIEYIMLDGVNDEEQHAHQLGK 287 (375)
Q Consensus 220 ~v~laiSL~a~~~~~r~~i~p~~~~~~~~~vl~~l~~~~~~~g~~-v~i~~vli~gvND~~e~~~~L~~ 287 (375)
-..+.+ +.|.-.+.+-+.+.+-.+......+.+ +.++++-.-|++-+.+.+.+|++
T Consensus 96 adavlv------------~~P~y~~~s~~~l~~~f~~va~a~~lPiilYn~P~~tg~~l~~~~~~~La~ 152 (297)
T 2rfg_A 96 ADAVLC------------VAGYYNRPSQEGLYQHFKMVHDAIDIPIIVYNIPPRAVVDIKPETMARLAA 152 (297)
T ss_dssp CSEEEE------------CCCTTTCCCHHHHHHHHHHHHHHCSSCEEEEECHHHHSCCCCHHHHHHHHT
T ss_pred CCEEEE------------cCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCCCCHHHHHHHHc
No 60
>3s5o_A 4-hydroxy-2-oxoglutarate aldolase, mitochondrial; beta barrel, schiff base, hydroxyproline metabolis; HET: KPI; 1.97A {Homo sapiens} SCOP: c.1.10.0 PDB: 3s5n_A
Probab=24.12 E-value=4.1e+02 Score=24.15 Aligned_cols=130 Identities=14% Similarity=0.180 Sum_probs=70.0
Q ss_pred CCCHHHHHHHHHHhhhhCCcceEEEEeC-CC-cccCHHHHHHHHHHhhCC-CCCCCCCeEEEEeCC--chhhH--HHHhh
Q 017203 144 NLSSGEIVEQLVHASRLSNIRNVVFMGM-GE-PLNNYAALVEAVRIMTGL-PFQVSPKRITVSTVG--IVHAI--NKFHS 216 (375)
Q Consensus 144 ~lt~~ei~~qi~~~~~~~~i~~Ivf~Gm-GE-Plln~~~l~~~i~~l~~~-g~~i~~~~itisTnG--~~~~i--~~l~~ 216 (375)
.++.+.+...+..... .++++|++.|. || |+|..++-.++++.+.+. + +...+-+-|.+ +...+ -+.++
T Consensus 31 ~iD~~~l~~lv~~li~-~Gv~Gl~v~GtTGE~~~Ls~~Er~~v~~~~~~~~~---gr~pviaGvg~~~t~~ai~la~~A~ 106 (307)
T 3s5o_A 31 EVDYGKLEENLHKLGT-FPFRGFVVQGSNGEFPFLTSSERLEVVSRVRQAMP---KNRLLLAGSGCESTQATVEMTVSMA 106 (307)
T ss_dssp CBCHHHHHHHHHHHTT-SCCSEEEESSGGGTGGGSCHHHHHHHHHHHHHTSC---TTSEEEEECCCSSHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHH-cCCCEEEECccccchhhCCHHHHHHHHHHHHHHcC---CCCcEEEecCCCCHHHHHHHHHHHH
Confidence 4566666666655543 47899999885 88 788888877888877654 2 11334444433 22222 23333
Q ss_pred hCCCceEEEEecCCCHHHHhhhcCCCCCCCHHHHHHHHHHHHHhcCCcEEE-EEEeeCCCCCCHHHHHHHHH
Q 017203 217 DLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFI-EYIMLDGVNDEEQHAHQLGK 287 (375)
Q Consensus 217 ~~~~v~laiSL~a~~~~~r~~i~p~~~~~~~~~vl~~l~~~~~~~g~~v~i-~~vli~gvND~~e~~~~L~~ 287 (375)
... .+-.+.+ .|. |.+ | +.+-+.+.+-.+......+.++.+ +++-.-|++-+++.+.+|++
T Consensus 107 ~~G-adavlv~-~P~---y~~--~---~~s~~~l~~~f~~ia~a~~lPiilYn~P~~tg~~l~~~~~~~La~ 168 (307)
T 3s5o_A 107 QVG-ADAAMVV-TPC---YYR--G---RMSSAALIHHYTKVADLSPIPVVLYSVPANTGLDLPVDAVVTLSQ 168 (307)
T ss_dssp HTT-CSEEEEE-CCC---TTG--G---GCCHHHHHHHHHHHHHHCSSCEEEEECHHHHSCCCCHHHHHHHHT
T ss_pred HcC-CCEEEEc-CCC---cCC--C---CCCHHHHHHHHHHHHhhcCCCEEEEeCCcccCCCCCHHHHHHHhc
Confidence 432 3422222 111 000 0 123456666666656666777654 33333467777777666653
No 61
>3kws_A Putative sugar isomerase; structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 1.68A {Parabacteroides distasonis atcc 8503}
Probab=24.03 E-value=3.6e+02 Score=23.47 Aligned_cols=41 Identities=15% Similarity=0.086 Sum_probs=24.6
Q ss_pred CCHHHHHHHHHHhhhhCCcceEEEEeCCCcccCHHHHHHHHHHhhCCCC
Q 017203 145 LSSGEIVEQLVHASRLSNIRNVVFMGMGEPLNNYAALVEAVRIMTGLPF 193 (375)
Q Consensus 145 lt~~ei~~qi~~~~~~~~i~~Ivf~GmGEPlln~~~l~~~i~~l~~~g~ 193 (375)
.+.++.++.+.. .+.++|-+.+ ..+ ...+.++-+.+++.|+
T Consensus 38 ~~~~~~l~~~~~----~G~~~vEl~~-~~~---~~~~~~~~~~l~~~gl 78 (287)
T 3kws_A 38 ESLNEKLDFMEK----LGVVGFEPGG-GGL---AGRVNEIKQALNGRNI 78 (287)
T ss_dssp SSHHHHHHHHHH----TTCCEEECBS-TTC---GGGHHHHHHHHTTSSC
T ss_pred CCHHHHHHHHHH----cCCCEEEecC-Cch---HHHHHHHHHHHHHcCC
Confidence 466776666554 3578888888 432 2345555556665573
No 62
>1xky_A Dihydrodipicolinate synthase; TIM barrel, , lysine biosynthesis;spine, lyase; 1.94A {Bacillus anthracis} SCOP: c.1.10.1 PDB: 1xl9_A 3hij_A*
Probab=23.81 E-value=4.1e+02 Score=24.06 Aligned_cols=131 Identities=11% Similarity=0.052 Sum_probs=0.0
Q ss_pred cCCCHHHHHHHHHHhhhhCCcceEEEEeC-CCc-ccCHHHHHHHHHHhhCC-CCCCCCCeEEEEeCCchh--hHHHHhhh
Q 017203 143 SNLSSGEIVEQLVHASRLSNIRNVVFMGM-GEP-LNNYAALVEAVRIMTGL-PFQVSPKRITVSTVGIVH--AINKFHSD 217 (375)
Q Consensus 143 r~lt~~ei~~qi~~~~~~~~i~~Ivf~Gm-GEP-lln~~~l~~~i~~l~~~-g~~i~~~~itisTnG~~~--~i~~l~~~ 217 (375)
..++.+.+...+..... .++++|++.|. ||- +|..++-.++++.+.+. +-.++ .-+.+.+|.+.. ..-+.++.
T Consensus 28 g~iD~~~l~~lv~~li~-~Gv~gl~v~GtTGE~~~Ls~eEr~~v~~~~~~~~~grvp-ViaGvg~~~t~~ai~la~~A~~ 105 (301)
T 1xky_A 28 GNIDFAKTTKLVNYLID-NGTTAIVVGGTTGESPTLTSEEKVALYRHVVSVVDKRVP-VIAGTGSNNTHASIDLTKKATE 105 (301)
T ss_dssp SSBCHHHHHHHHHHHHH-TTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSC-EEEECCCSCHHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHHH-cCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCce-EEeCCCCCCHHHHHHHHHHHHh
Q ss_pred CCCceEEEEecCCCHHHHhhhcCCCCCCCHHHHHHHHHHHHHhcCCc-EEEEEEeeCCCCCCHHHHHHHHH
Q 017203 218 LPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQK-IFIEYIMLDGVNDEEQHAHQLGK 287 (375)
Q Consensus 218 ~~~v~laiSL~a~~~~~r~~i~p~~~~~~~~~vl~~l~~~~~~~g~~-v~i~~vli~gvND~~e~~~~L~~ 287 (375)
..-..+.+ +.|.-.+.+-+.+.+-.+......+.+ +.++++-.-|++-+.+.+.+|++
T Consensus 106 ~Gadavlv------------~~P~y~~~s~~~l~~~f~~va~a~~lPiilYn~P~~tg~~l~~~~~~~La~ 164 (301)
T 1xky_A 106 VGVDAVML------------VAPYYNKPSQEGMYQHFKAIAESTPLPVMLYNVPGRSIVQISVDTVVRLSE 164 (301)
T ss_dssp TTCSEEEE------------ECCCSSCCCHHHHHHHHHHHHHTCSSCEEEEECHHHHSSCCCHHHHHHHHT
T ss_pred cCCCEEEE------------cCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCCCCHHHHHHHHc
No 63
>1o98_A 2,3-bisphosphoglycerate-independent phosphoglycerate mutase; isomerase, alpha/beta-type structure; HET: 2PG; 1.4A {Bacillus stearothermophilus} SCOP: c.105.1.1 c.76.1.3 PDB: 1ejj_A* 1eqj_A* 1o99_A* 2ify_A
Probab=23.67 E-value=3e+02 Score=27.35 Aligned_cols=80 Identities=18% Similarity=0.233 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHHHhcCCcEEEEEEeeCC-CCCCHHHHHHHHHHHhcCCC-EEEEeecCCCCCCCCCCCC-cHHHHHHHHH
Q 017203 247 LEKLMNALKEYQKNSQQKIFIEYIMLDG-VNDEEQHAHQLGKLLETFQV-VVNLIPFNPIGSVSQFRTS-SDDKVSSFQK 323 (375)
Q Consensus 247 ~~~vl~~l~~~~~~~g~~v~i~~vli~g-vND~~e~~~~L~~~l~~~~~-~vnLip~np~~~~~~~~~~-s~e~i~~f~~ 323 (375)
.+.+.+++ +.+++.+..+.+-=++-+| |....+|+.+|+++++..++ +|.+-.|.. +.+.+|. ...-++++.+
T Consensus 94 ~~~~~~~~-~~~~~~~~~~H~~gl~sdggvhsh~~hl~~l~~~a~~~g~~~v~~H~~~d---GrD~~p~s~~~~~~~~~~ 169 (511)
T 1o98_A 94 NETFLAAM-NHVKQHGTSLHLFGLLSDGGVHSHIHHLYALLRLAAKEGVKRVYIHGFLD---GRDVGPQTAPQYIKELQE 169 (511)
T ss_dssp CHHHHHHH-HHHHHHTCCEEEEEECSSCCSSCCHHHHHHHHHHHHHTTCCCEEEEEEEC---SSSSCTTCHHHHHHHHHH
T ss_pred CHHHHHHH-HHHHhcCCeEEEEEeccCCCCccHHHHHHHHHHHHHHCCCCeEEEEEEcc---CCCCCCchHHHHHHHHHH
Confidence 35556666 4556778888887777774 89999999999999999887 366555543 3344333 3566778888
Q ss_pred HHHhcCCc
Q 017203 324 ILRGSYNI 331 (375)
Q Consensus 324 ~l~~~~Gi 331 (375)
.+. +.|+
T Consensus 170 ~~~-~~~~ 176 (511)
T 1o98_A 170 KIK-EYGV 176 (511)
T ss_dssp HHH-HHTC
T ss_pred HHH-HhCC
Confidence 887 4553
No 64
>3hcn_A Ferrochelatase, mitochondrial; metal selectivity, disease mutation, heme biosynthesis, iron, iron-sulfur, lyase, membrane, metal-BIN mitochondrion; HET: CHD HEM GOL; 1.60A {Homo sapiens} SCOP: c.92.1.1 PDB: 2qd3_A* 2qd5_A* 2qd4_A* 3hco_A* 3hcr_A* 2qd1_A* 2hre_A* 3hcp_A* 2qd2_A* 2hrc_A* 1hrk_A* 4f4d_A* 3aqi_A* 2pnj_A* 2po5_A* 2po7_A*
Probab=23.09 E-value=4.1e+02 Score=25.03 Aligned_cols=105 Identities=16% Similarity=0.187 Sum_probs=59.7
Q ss_pred CCcccCHHHHHHHHHHhhCC-CCCCCCCeEEEEe-CCch----h----hHHHHhhhCCCceEEEEecCCCHHHHhhhcCC
Q 017203 172 GEPLNNYAALVEAVRIMTGL-PFQVSPKRITVST-VGIV----H----AINKFHSDLPGLNLAVSLHAPVQDVRCQIMPA 241 (375)
Q Consensus 172 GEPlln~~~l~~~i~~l~~~-g~~i~~~~itisT-nG~~----~----~i~~l~~~~~~v~laiSL~a~~~~~r~~i~p~ 241 (375)
|+|. ..++.+..+.+.+. |+. ....++..+ .|-. | .+++|++.+. -.+.|---+...+.-
T Consensus 209 GDpY--~~q~~~t~~lv~e~Lg~~-~~~~l~~QSr~G~~~WL~P~t~d~l~~L~~~G~-k~vvv~P~gFvsD~l------ 278 (359)
T 3hcn_A 209 GDPY--PQEVSATVQKVMERLEYC-NPYRLVWQSKVGPMPWLGPQTDESIKGLCERGR-KNILLVPIAFTSDHI------ 278 (359)
T ss_dssp TCSH--HHHHHHHHHHHHHHTTTC-SCEEEEEECCSCSSCBSSSBHHHHHHHHHHTTC-CEEEEECTTCCSCCC------
T ss_pred CCCH--HHHHHHHHHHHHHHcCCC-CCEEEEEEcCCCCCCCCCCCHHHHHHHHHHcCC-CeEEEECCccchhhH------
Confidence 7775 35788888888765 542 124566666 4722 3 3567776652 344432112221111
Q ss_pred CCCCCHHHH-HHHHHHHHHhcCCcEEEEEEeeCCCCCCHHHHHHHHHHHhcC
Q 017203 242 ARAFPLEKL-MNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETF 292 (375)
Q Consensus 242 ~~~~~~~~v-l~~l~~~~~~~g~~v~i~~vli~gvND~~e~~~~L~~~l~~~ 292 (375)
-+++++ +++.++...+.|.. +|..+|-+||++..++.|++++...
T Consensus 279 ---ETL~Eid~E~~~e~a~e~G~~---~~~rip~LNd~p~fi~~La~lv~~~ 324 (359)
T 3hcn_A 279 ---ETLYELDIEYSQVLAKECGVE---NIRRAESLNGNPLFSKALADLVHSH 324 (359)
T ss_dssp ---CCHHHHCHHHHHHHHHHTCCC---EEEECCCSTTCHHHHHHHHHHHHHH
T ss_pred ---HhHHHHHHHHHHHHHHhCCCc---eEEEcCCCCCCHHHHHHHHHHHHHH
Confidence 123333 22233444566643 3566899999999999999998753
No 65
>1w3i_A EDA, 2-keto-3-deoxy gluconate aldolase; archaeal metabolism, pyruvate; 1.7A {Sulfolobus solfataricus} SCOP: c.1.10.1 PDB: 1w37_A 1w3n_A* 1w3t_A* 2yda_A*
Probab=22.52 E-value=4.3e+02 Score=23.80 Aligned_cols=126 Identities=13% Similarity=0.181 Sum_probs=0.0
Q ss_pred cCCCHHHHHHHHHHhhhhCCcceEEEEeC-CC-cccCHHHHHHHHHHhhCCCCCCCCCeEEEEeCCchh--hHHHHhhhC
Q 017203 143 SNLSSGEIVEQLVHASRLSNIRNVVFMGM-GE-PLNNYAALVEAVRIMTGLPFQVSPKRITVSTVGIVH--AINKFHSDL 218 (375)
Q Consensus 143 r~lt~~ei~~qi~~~~~~~~i~~Ivf~Gm-GE-Plln~~~l~~~i~~l~~~g~~i~~~~itisTnG~~~--~i~~l~~~~ 218 (375)
..++.+.+...+..... .++++|++.|. || |+|..++-.++++...+..-+ .-+.+.+|.+.. ..-+.++..
T Consensus 15 g~iD~~~l~~lv~~li~-~Gv~gl~~~GttGE~~~Ls~eEr~~v~~~~~~~~~g---viaGvg~~~t~~ai~la~~A~~~ 90 (293)
T 1w3i_A 15 NRIDKEKLKIHAENLIR-KGIDKLFVNGTTGLGPSLSPEEKLENLKAVYDVTNK---IIFQVGGLNLDDAIRLAKLSKDF 90 (293)
T ss_dssp SSBCHHHHHHHHHHHHH-TTCCEEEESSTTTTGGGSCHHHHHHHHHHHHTTCSC---EEEECCCSCHHHHHHHHHHGGGS
T ss_pred CCcCHHHHHHHHHHHHH-cCCCEEEECccccChhhCCHHHHHHHHHHHHHHcCC---EEEecCCCCHHHHHHHHHHHHhc
Q ss_pred CCceEEEEecCCCHHHHhhhcCCCCC-CCHHHHHHHHHHHHHhcCCc-EEEEEEeeCCCCCCHHHHHH
Q 017203 219 PGLNLAVSLHAPVQDVRCQIMPAARA-FPLEKLMNALKEYQKNSQQK-IFIEYIMLDGVNDEEQHAHQ 284 (375)
Q Consensus 219 ~~v~laiSL~a~~~~~r~~i~p~~~~-~~~~~vl~~l~~~~~~~g~~-v~i~~vli~gvND~~e~~~~ 284 (375)
.-..+.+ +.|.-.+ .+-+.+.+-.+......+.+ +.++++-.-|++-+++.+.+
T Consensus 91 Gadavlv------------~~P~y~~~~s~~~l~~~f~~va~a~~lPiilYn~P~~tg~~l~~~~~~~ 146 (293)
T 1w3i_A 91 DIVGIAS------------YAPYYYPRMSEKHLVKYFKTLCEVSPHPVYLYNYPTATGKDIDAKVAKE 146 (293)
T ss_dssp CCSEEEE------------ECCCSCSSCCHHHHHHHHHHHHHHCSSCEEEEECHHHHSCCCCHHHHHH
T ss_pred CCCEEEE------------cCCCCCCCCCHHHHHHHHHHHHhhCCCCEEEEECchhhCcCCCHHHHHh
No 66
>3noy_A 4-hydroxy-3-methylbut-2-EN-1-YL diphosphate synth; iron-sulfur protein, non-mevalonate pathway, terpene biosynt isoprenoid biosynthesis; 2.70A {Aquifex aeolicus}
Probab=22.47 E-value=5e+02 Score=24.59 Aligned_cols=34 Identities=26% Similarity=0.497 Sum_probs=21.7
Q ss_pred CCcHHHHHHHHHHHHhcCCceEEeccCCCcch--hcccchhh
Q 017203 312 TSSDDKVSSFQKILRGSYNIRTTVRKQMGQDI--SGACGQLV 351 (375)
Q Consensus 312 ~~s~e~i~~f~~~l~~~~Gi~v~vR~~~g~di--~aaCGql~ 351 (375)
+.+.+++.-.+++|+ ..|+ | .+|.++ +..||...
T Consensus 246 ~~p~~Ev~va~~ILq-slgl----R-~~g~~~ISCPtCGRt~ 281 (366)
T 3noy_A 246 DDPVVEVETAYEILK-SLGL----R-RRGVEIVACPTCGRIE 281 (366)
T ss_dssp SCHHHHHHHHHHHHH-HTTS----C-CSSCEEEECCCCTTCC
T ss_pred CCcHHHHHHHHHHHH-hcCC----C-cCCCEEEECCCCCCcc
Confidence 345788888888998 5774 2 234444 47788543
No 67
>1w79_A D-alanyl-D-alanine carboxypeptidase; penicillin-binding, peptidoglycan, transpeptidase, antibiotic resistance, hydrolase; 1.8A {Actinomadura SP} SCOP: e.3.1.3 PDB: 1w8q_A 1w8y_A* 2vgj_A* 2vgk_A* 2xln_A* 2y5o_A* 2xdm_A* 2xk1_A* 2y4a_A* 2y55_A* 2y59_A* 2wke_A* 2y5r_A* 3zvt_A* 3zvw_A*
Probab=22.41 E-value=80 Score=31.34 Aligned_cols=43 Identities=9% Similarity=0.125 Sum_probs=32.1
Q ss_pred ceEEEEeCCCcccCHHHHHHHHHHhhCCCCCCCCCeEEEEeCC
Q 017203 164 RNVVFMGMGEPLNNYAALVEAVRIMTGLPFQVSPKRITVSTVG 206 (375)
Q Consensus 164 ~~Ivf~GmGEPlln~~~l~~~i~~l~~~g~~i~~~~itisTnG 206 (375)
.++++.|-|+|++..+.+.++++.+++.|+.--.-.+.++++-
T Consensus 86 gdL~l~G~GDPtL~~~~L~~La~~L~~~GI~~I~G~lv~D~s~ 128 (489)
T 1w79_A 86 QDLYLVGRGDPTLSAEDLDAMAAEVAASGVRTVRGDLYADDTW 128 (489)
T ss_dssp SCEEEEECSCTTCCHHHHHHHHHHHHHTTCCEECSCEEEECTT
T ss_pred ccEEEEeCCCCccCHHHHHHHHHHHHHcCCcEEeeeEEEECCc
Confidence 3688888899999999999999999987742111246677664
No 68
>2ojp_A DHDPS, dihydrodipicolinate synthase; dimer, lysine biosynthe lyase; HET: KGC GOL; 1.70A {Escherichia coli} PDB: 1yxc_A 1dhp_A 1yxd_A* 2ats_A* 3du0_A* 3c0j_A* 3ubs_A* 4eou_A* 3i7q_A* 3i7r_A* 3i7s_A* 2pur_A* 1s5v_A 1s5w_A 1s5t_A 3den_A* 2a6l_A 2a6n_A 3g0s_A
Probab=21.90 E-value=4.4e+02 Score=23.69 Aligned_cols=131 Identities=14% Similarity=0.118 Sum_probs=0.0
Q ss_pred cCCCHHHHHHHHHHhhhhCCcceEEEEeC-CCc-ccCHHHHHHHHHHhhCC-CCCCCCCeEEEEeCCchh--hHHHHhhh
Q 017203 143 SNLSSGEIVEQLVHASRLSNIRNVVFMGM-GEP-LNNYAALVEAVRIMTGL-PFQVSPKRITVSTVGIVH--AINKFHSD 217 (375)
Q Consensus 143 r~lt~~ei~~qi~~~~~~~~i~~Ivf~Gm-GEP-lln~~~l~~~i~~l~~~-g~~i~~~~itisTnG~~~--~i~~l~~~ 217 (375)
..++.+.+...+..... .++++|++.|. ||- +|..++-.++++...+. +-.++ .-+.+.+|.+.. ..-+.++.
T Consensus 17 g~iD~~~l~~lv~~li~-~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~gr~p-viaGvg~~~t~~ai~la~~a~~ 94 (292)
T 2ojp_A 17 GNVCRASLKKLIDYHVA-SGTSAIVSVGTTGESATLNHDEHADVVMMTLDLADGRIP-VIAGTGANATAEAISLTQRFND 94 (292)
T ss_dssp SCBCHHHHHHHHHHHHH-HTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSC-EEEECCCSSHHHHHHHHHHTTT
T ss_pred CCcCHHHHHHHHHHHHH-cCCCEEEECccccchhhCCHHHHHHHHHHHHHHhCCCCc-EEEecCCccHHHHHHHHHHHHh
Q ss_pred CCCceEEEEecCCCHHHHhhhcCCCCCCCHHHHHHHHHHHHHhcCCc-EEEEEEeeCCCCCCHHHHHHHHH
Q 017203 218 LPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQK-IFIEYIMLDGVNDEEQHAHQLGK 287 (375)
Q Consensus 218 ~~~v~laiSL~a~~~~~r~~i~p~~~~~~~~~vl~~l~~~~~~~g~~-v~i~~vli~gvND~~e~~~~L~~ 287 (375)
..-..+.+ +.|.-.+.+-+.+.+-.+......+.+ +..+++-.-|++-+++.+.+|++
T Consensus 95 ~Gadavlv------------~~P~y~~~s~~~l~~~f~~ia~a~~lPiilYn~P~~tg~~l~~~~~~~La~ 153 (292)
T 2ojp_A 95 SGIVGCLT------------VTPYYNRPSQEGLYQHFKAIAEHTDLPQILYNVPSRTGCDLLPETVGRLAK 153 (292)
T ss_dssp SSCSEEEE------------ECCCSSCCCHHHHHHHHHHHHTTCSSCEEEECCHHHHSCCCCHHHHHHHHT
T ss_pred cCCCEEEE------------CCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCcchhccCCCHHHHHHHHc
No 69
>3qfe_A Putative dihydrodipicolinate synthase family PROT; seattle structural genomics center for infectious disease, S coccidioides, valley fever; 2.35A {Coccidioides immitis}
Probab=21.41 E-value=4.7e+02 Score=23.89 Aligned_cols=130 Identities=12% Similarity=0.112 Sum_probs=66.5
Q ss_pred CCCHHHHHHHHHHhhhhCCcceEEEEeC-CC-cccCHHHHHHHHHHhhCC-CCCCCCCeEEEEeCC--chhhH--HHHhh
Q 017203 144 NLSSGEIVEQLVHASRLSNIRNVVFMGM-GE-PLNNYAALVEAVRIMTGL-PFQVSPKRITVSTVG--IVHAI--NKFHS 216 (375)
Q Consensus 144 ~lt~~ei~~qi~~~~~~~~i~~Ivf~Gm-GE-Plln~~~l~~~i~~l~~~-g~~i~~~~itisTnG--~~~~i--~~l~~ 216 (375)
.++.+.+...+..... .++++|++.|. || |+|..++-.++++...+. + +...+-+-|.+ +...+ -+.++
T Consensus 28 ~iD~~~l~~lv~~li~-~Gv~gl~v~GtTGE~~~Ls~~Er~~v~~~~~~~~~---grvpviaGvg~~~t~~ai~la~~a~ 103 (318)
T 3qfe_A 28 TLDLASQERYYAYLAR-SGLTGLVILGTNAEAFLLTREERAQLIATARKAVG---PDFPIMAGVGAHSTRQVLEHINDAS 103 (318)
T ss_dssp EECHHHHHHHHHHHHT-TTCSEEEESSGGGTGGGSCHHHHHHHHHHHHHHHC---TTSCEEEECCCSSHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH-cCCCEEEeCccccChhhCCHHHHHHHHHHHHHHhC---CCCcEEEeCCCCCHHHHHHHHHHHH
Confidence 4566666666655443 47899998885 88 778877766777666543 2 11335444433 32222 23333
Q ss_pred hCCCceEEEEecCCCHHHHhhhcCCCCCCCHHHHHHHHHHHHHhcCCcEEE-EEEee-CCCCCCHHHHHHHHH
Q 017203 217 DLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFI-EYIML-DGVNDEEQHAHQLGK 287 (375)
Q Consensus 217 ~~~~v~laiSL~a~~~~~r~~i~p~~~~~~~~~vl~~l~~~~~~~g~~v~i-~~vli-~gvND~~e~~~~L~~ 287 (375)
... .+-.+.+ .|. .+ ++..+-+.+.+-.+......+.++.+ +++-. .|++-+++.+.+|++
T Consensus 104 ~~G-adavlv~-~P~--y~------~kp~~~~~l~~~f~~ia~a~~lPiilYn~P~~t~g~~l~~~~~~~La~ 166 (318)
T 3qfe_A 104 VAG-ANYVLVL-PPA--YF------GKATTPPVIKSFFDDVSCQSPLPVVIYNFPGVCNGIDLDSDMITTIAR 166 (318)
T ss_dssp HHT-CSEEEEC-CCC--C---------CCCHHHHHHHHHHHHHHCSSCEEEEECCC----CCCCHHHHHHHHH
T ss_pred HcC-CCEEEEe-CCc--cc------CCCCCHHHHHHHHHHHHhhCCCCEEEEeCCcccCCCCCCHHHHHHHHh
Confidence 322 3322222 110 00 01123456666666666666777654 33332 266677776666665
No 70
>3eeg_A 2-isopropylmalate synthase; 11106D, beta barrel, PSI-II, structural genomics, protein structure initiative; 2.78A {Cytophaga hutchinsonii atcc 33406}
Probab=21.21 E-value=4.8e+02 Score=23.95 Aligned_cols=183 Identities=11% Similarity=0.029 Sum_probs=91.7
Q ss_pred ccCCCHHHHHHHHHHhhhhCCcceEEEEeCCCcccCHHHHHHHHHHhhCCCCCCCCCeEEEEeCCchhhHHHHhhhC---
Q 017203 142 KSNLSSGEIVEQLVHASRLSNIRNVVFMGMGEPLNNYAALVEAVRIMTGLPFQVSPKRITVSTVGIVHAINKFHSDL--- 218 (375)
Q Consensus 142 ~r~lt~~ei~~qi~~~~~~~~i~~Ivf~GmGEPlln~~~l~~~i~~l~~~g~~i~~~~itisTnG~~~~i~~l~~~~--- 218 (375)
...++.++.++.+....+ .+++.|-+ |=|..+++.. +.++.+.+.. ...++..-+-+....+++-.+..
T Consensus 22 ~~~~~~~~Kl~ia~~L~~-~Gv~~IE~---g~p~~~~~d~-e~v~~i~~~~---~~~~i~~l~r~~~~~i~~a~~al~~a 93 (325)
T 3eeg_A 22 GCQLNTEEKIIVAKALDE-LGVDVIEA---GFPVSSPGDF-NSVVEITKAV---TRPTICALTRAKEADINIAGEALRFA 93 (325)
T ss_dssp ---CCTTHHHHHHHHHHH-HTCSEEEE---ECTTSCHHHH-HHHHHHHHHC---CSSEEEEECCSCHHHHHHHHHHHTTC
T ss_pred CCCCCHHHHHHHHHHHHH-cCCCEEEE---eCCCCCHhHH-HHHHHHHHhC---CCCEEEEeecCCHHHHHHHHHhhccc
Confidence 345777777766665544 35666554 2377776433 3344444321 11345544433333444333321
Q ss_pred CCceEEEEecCCCHHHHhhhcCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEEeeCCCCCCHHHHHHHHHHHhcCCCEEEE
Q 017203 219 PGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNL 298 (375)
Q Consensus 219 ~~v~laiSL~a~~~~~r~~i~p~~~~~~~~~vl~~l~~~~~~~g~~v~i~~vli~gvND~~e~~~~L~~~l~~~~~~vnL 298 (375)
....+.+.+.+ ++-....-+.......++.+.+.+ +++++.|..+.+.... +--.+++.+.++++.+.+.++..
T Consensus 94 g~~~v~i~~s~-Sd~~~~~~l~~s~~e~l~~~~~~v-~~a~~~g~~v~f~~~d--~~~~~~~~~~~~~~~~~~~G~~~-- 167 (325)
T 3eeg_A 94 KRSRIHTGIGS-SDIHIEHKLRSTRENILEMAVAAV-KQAKKVVHEVEFFCED--AGRADQAFLARMVEAVIEAGADV-- 167 (325)
T ss_dssp SSEEEEEEEEC-SHHHHC----CCCTTGGGTTHHHH-HHHHTTSSEEEEEEET--GGGSCHHHHHHHHHHHHHHTCSE--
T ss_pred CCCEEEEEecc-cHHHHHHHhCCCHHHHHHHHHHHH-HHHHHCCCEEEEEccc--cccchHHHHHHHHHHHHhcCCCE--
Confidence 11234444433 333222222334455677777777 5677888877664432 22235778888888888888752
Q ss_pred eecCCCCCCCCCCCCcHHHHHHHHHHHHhcCC----ce--EEeccCCCcch
Q 017203 299 IPFNPIGSVSQFRTSSDDKVSSFQKILRGSYN----IR--TTVRKQMGQDI 343 (375)
Q Consensus 299 ip~np~~~~~~~~~~s~e~i~~f~~~l~~~~G----i~--v~vR~~~g~di 343 (375)
+-+..+ .++ ..+.++.++.+.+++..+ +. +..-...|.-+
T Consensus 168 i~l~DT---~G~--~~P~~v~~lv~~l~~~~~~~~~~~i~~H~Hnd~GlA~ 213 (325)
T 3eeg_A 168 VNIPDT---TGY--MLPWQYGERIKYLMDNVSNIDKAILSAHCHNDLGLAT 213 (325)
T ss_dssp EECCBS---SSC--CCHHHHHHHHHHHHHHCSCGGGSEEEECBCCTTSCHH
T ss_pred EEecCc---cCC--cCHHHHHHHHHHHHHhCCCCCceEEEEEeCCCCCHHH
Confidence 223333 122 234566666666653444 33 44455666644
No 71
>2dl0_A SAM and SH3 domain-containing protein 1; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.01 E-value=72 Score=24.25 Aligned_cols=48 Identities=10% Similarity=-0.090 Sum_probs=32.3
Q ss_pred CCCCCCCCHHHHHHHHHHcCCCcchHHHHHHHHHhCCCCCCCCCCCCCHHHHH
Q 017203 3 YDYRSVFDGGIIRAEFEKAGIKQHFIPLIWKYVIENPNCEWDEFPSLPSAAYS 55 (375)
Q Consensus 3 ~~~~~~~~~~~l~~~~~~~g~~~~~~~qi~~~~~~~~~~~~~~~~~l~~~~r~ 55 (375)
.+|.+.....++.+||.++|++.|.. . +..++..+++.+..|..+...
T Consensus 15 ~~p~~~~~~~sV~eWL~~igL~qY~~--~---F~~~g~d~le~l~~lt~~DL~ 62 (97)
T 2dl0_A 15 RKPVSPGCISSVSDWLISIGLPMYAG--T---LSTAGFSTLSQVPSLSHTCLQ 62 (97)
T ss_dssp CCCCCCSCCCSHHHHHHHHTCGGGHH--H---HHHHTCCSTTSGGGCCHHHHH
T ss_pred cCCCCccccCcHHHHHHHCCCHHHHH--H---HHHcCCCcHHHHHhcCHHHHH
Confidence 34555556677889999999999843 2 235566667777777655443
No 72
>3p6l_A Sugar phosphate isomerase/epimerase; TIM barrel, structural genomics, joint center for structural genomics, JCSG; HET: CIT; 1.85A {Parabacteroides distasonis}
Probab=20.98 E-value=3.4e+02 Score=23.27 Aligned_cols=73 Identities=16% Similarity=0.217 Sum_probs=37.3
Q ss_pred HHHHHHHHHhcCCcEEEEEEeeCCCCCCHHHHHHHHHHHhcCCCEEEEeecCCCCCCCCCCCCcHHHHHHHHHHHHhcCC
Q 017203 251 MNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYN 330 (375)
Q Consensus 251 l~~l~~~~~~~g~~v~i~~vli~gvND~~e~~~~L~~~l~~~~~~vnLip~np~~~~~~~~~~s~e~i~~f~~~l~~~~G 330 (375)
.+.+++.++++|..+..-.+. .+.+.+.+++.+++++.+++..-.+ +|. .+.+.++.+.++ ++|
T Consensus 65 ~~~~~~~l~~~gl~i~~~~~~---~~~~~~~~~~~i~~A~~lGa~~v~~--~~~----------~~~~~~l~~~a~-~~g 128 (262)
T 3p6l_A 65 QKEIKELAASKGIKIVGTGVY---VAEKSSDWEKMFKFAKAMDLEFITC--EPA----------LSDWDLVEKLSK-QYN 128 (262)
T ss_dssp HHHHHHHHHHTTCEEEEEEEE---CCSSTTHHHHHHHHHHHTTCSEEEE--CCC----------GGGHHHHHHHHH-HHT
T ss_pred HHHHHHHHHHcCCeEEEEecc---CCccHHHHHHHHHHHHHcCCCEEEe--cCC----------HHHHHHHHHHHH-HhC
Confidence 344445556666665433322 2334556777777777777642222 121 123445555555 566
Q ss_pred ceEEeccCC
Q 017203 331 IRTTVRKQM 339 (375)
Q Consensus 331 i~v~vR~~~ 339 (375)
+.+.+-+-.
T Consensus 129 v~l~~En~~ 137 (262)
T 3p6l_A 129 IKISVHNHP 137 (262)
T ss_dssp CEEEEECCS
T ss_pred CEEEEEeCC
Confidence 666655543
No 73
>2wci_A Glutaredoxin-4; redox-active center, iron-sulfur cluster scaffolder, Fe2S2, homodimer, transport, glutathione, thioredoxin fold; HET: GSH; 1.90A {Escherichia coli} PDB: 1yka_A
Probab=20.93 E-value=71 Score=25.66 Aligned_cols=65 Identities=15% Similarity=0.241 Sum_probs=33.7
Q ss_pred ceEEEEeecCCCCCcCccccCCC-----CCc---ccCCC-HHHHHHHHHHhhhhCCcceEEEEeCCCcccCHHHHHH
Q 017203 116 RSTLCISSQVGCKMGCNFCATGT-----MGF---KSNLS-SGEIVEQLVHASRLSNIRNVVFMGMGEPLNNYAALVE 183 (375)
Q Consensus 116 r~tl~vssq~GCnl~C~fC~~~~-----~~~---~r~lt-~~ei~~qi~~~~~~~~i~~Ivf~GmGEPlln~~~l~~ 183 (375)
+.+++..+...+ -.|+||.... .+. ..++. ..++.+.+........ --++|.+ |+..--++.+.+
T Consensus 36 ~Vvvy~ks~~~~-~~Cp~C~~ak~~L~~~gv~y~~vdI~~d~~~~~~L~~~~G~~t-vP~VfI~-G~~iGG~d~l~~ 109 (135)
T 2wci_A 36 PILLYMKGSPKL-PSCGFSAQAVQALAACGERFAYVDILQNPDIRAELPKYANWPT-FPQLWVD-GELVGGCDIVIE 109 (135)
T ss_dssp SEEEEESBCSSS-BSSHHHHHHHHHHHTTCSCCEEEEGGGCHHHHHHHHHHHTCCS-SCEEEET-TEEEESHHHHHH
T ss_pred CEEEEEEecCCC-CCCccHHHHHHHHHHcCCceEEEECCCCHHHHHHHHHHHCCCC-cCEEEEC-CEEEEChHHHHH
Confidence 578887766665 4899997632 111 11221 1334444444332112 2356677 777665655443
No 74
>3d0c_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI-2, structural genomics; 1.90A {Oceanobacillus iheyensis HTE831}
Probab=20.91 E-value=2.8e+02 Score=25.39 Aligned_cols=62 Identities=15% Similarity=0.208 Sum_probs=34.8
Q ss_pred CCCCCCHHHHHHHHHHHhcCCCEEEEeecCCCCCCCCCCCCcHHHHHHHHH-HHHhcCCceEEeccCCCc
Q 017203 273 DGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQK-ILRGSYNIRTTVRKQMGQ 341 (375)
Q Consensus 273 ~gvND~~e~~~~L~~~l~~~~~~vnLip~np~~~~~~~~~~s~e~i~~f~~-~l~~~~Gi~v~vR~~~g~ 341 (375)
.|+..+.++.-++++.+++.|+.--++ ..|. |..|+.+.+.++.+ +.. ..++++.+=+.-|.
T Consensus 86 aGvg~st~~ai~la~~A~~~Gadavlv-~~P~-----y~~~s~~~l~~~f~~va~-a~~lPiilYn~tg~ 148 (314)
T 3d0c_A 86 AGIGYSVDTAIELGKSAIDSGADCVMI-HQPV-----HPYITDAGAVEYYRNIIE-ALDAPSIIYFKDAH 148 (314)
T ss_dssp EEECSSHHHHHHHHHHHHHTTCSEEEE-CCCC-----CSCCCHHHHHHHHHHHHH-HSSSCEEEEECCTT
T ss_pred ecCCcCHHHHHHHHHHHHHcCCCEEEE-CCCC-----CCCCCHHHHHHHHHHHHH-hCCCCEEEEeCCCC
Confidence 344446678888999999888763222 2343 12345555555544 444 56676655443344
No 75
>2lqo_A Putative glutaredoxin RV3198.1/MT3292; TRX fold, oxidoreductase; NMR {Mycobacterium tuberculosis}
Probab=20.68 E-value=37 Score=25.45 Aligned_cols=67 Identities=12% Similarity=0.192 Sum_probs=32.0
Q ss_pred ceEEEEeecCCCCCcCccccCCCC-----C--c-ccCCCH-HHHHHHHHHhhh-hCCcceEEEEeCCCcccCH--HHHHH
Q 017203 116 RSTLCISSQVGCKMGCNFCATGTM-----G--F-KSNLSS-GEIVEQLVHASR-LSNIRNVVFMGMGEPLNNY--AALVE 183 (375)
Q Consensus 116 r~tl~vssq~GCnl~C~fC~~~~~-----~--~-~r~lt~-~ei~~qi~~~~~-~~~i~~Ivf~GmGEPlln~--~~l~~ 183 (375)
..+++-. -.|+||...+. + + ..+++. .+..+.+..... ...+-.| |.|-|..+.++ +.+.+
T Consensus 5 ~I~vYs~------~~Cp~C~~aK~~L~~~gi~y~~idi~~d~~~~~~~~~~~~G~~tVP~I-~i~Dg~~l~~~~~~el~~ 77 (92)
T 2lqo_A 5 ALTIYTT------SWCGYCLRLKTALTANRIAYDEVDIEHNRAAAEFVGSVNGGNRTVPTV-KFADGSTLTNPSADEVKA 77 (92)
T ss_dssp CEEEEEC------TTCSSHHHHHHHHHHTTCCCEEEETTTCHHHHHHHHHHSSSSSCSCEE-EETTSCEEESCCHHHHHH
T ss_pred cEEEEcC------CCCHhHHHHHHHHHhcCCceEEEEcCCCHHHHHHHHHHcCCCCEeCEE-EEeCCEEEeCCCHHHHHH
Confidence 3566653 26889976421 1 1 122322 233444444332 1223344 44447877764 45555
Q ss_pred HHHHhh
Q 017203 184 AVRIMT 189 (375)
Q Consensus 184 ~i~~l~ 189 (375)
.+..+-
T Consensus 78 ~L~el~ 83 (92)
T 2lqo_A 78 KLVKIA 83 (92)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 555543
No 76
>2l7x_A Envelope glycoprotein; cytoplasmic tail, viral protein; NMR {Crimean-congo hemorrhagic fever virus}
Probab=20.03 E-value=27 Score=25.12 Aligned_cols=11 Identities=36% Similarity=1.268 Sum_probs=8.9
Q ss_pred CCCc-CccccCC
Q 017203 127 CKMG-CNFCATG 137 (375)
Q Consensus 127 Cnl~-C~fC~~~ 137 (375)
|+++ |+||++-
T Consensus 28 Cs~NiCPYC~nR 39 (77)
T 2l7x_A 28 CSYNICPYCASR 39 (77)
T ss_dssp HTTTCCTTTCCC
T ss_pred CCcccChhhhcc
Confidence 7776 9999984
Done!