BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 017204
(375 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|115334977|gb|ABI94076.1| chloroplast ribulose-1,5-bisphosphate carboxylase/oxygenase
activase large protein isoform [Acer rubrum]
Length = 474
Score = 716 bits (1849), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 339/374 (90%), Positives = 359/374 (95%), Gaps = 1/374 (0%)
Query: 2 GTGTHYAVMSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLI 61
GTGTHYAVMSSYDYIS GLRTY L+N++DG YIAPAFMDKLVVHITKNFMSLPNIK+PLI
Sbjct: 102 GTGTHYAVMSSYDYISTGLRTY-LENSMDGFYIAPAFMDKLVVHITKNFMSLPNIKIPLI 160
Query: 62 LGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKG 121
LGIWGGKGQGKSFQCELVFAKMGI PIMMSAGELESGNAGEPAKLIRQRYREAADIIKKG
Sbjct: 161 LGIWGGKGQGKSFQCELVFAKMGITPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKG 220
Query: 122 KMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPI 181
KMCCL INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPT VQLPGMYNKEENPRVPI
Sbjct: 221 KMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTSVQLPGMYNKEENPRVPI 280
Query: 182 IVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQ 241
IVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFR+DNVAD +++KLVDTFPGQ
Sbjct: 281 IVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRSDNVADGELIKLVDTFPGQ 340
Query: 242 SIDFFGALRARVYDDEVRKWISGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMI 301
SIDFFGALRARVYDDEVRKWISG+GV SIGK+LVNSK PTFEQP+MT++KLLEYGNM+
Sbjct: 341 SIDFFGALRARVYDDEVRKWISGIGVDSIGKNLVNSKNGPPTFEQPKMTIDKLLEYGNML 400
Query: 302 VQEQENVKRVQLADKYLSEAALGEANEDAIQSGNFYGKAAQQMNVPVPEGCTDPTAENFD 361
VQEQENVKRVQLADKYLSEAALG+AN+DAI+ G+FYGKAAQQ+NVPVPEGCTD A N+D
Sbjct: 401 VQEQENVKRVQLADKYLSEAALGDANDDAIKRGSFYGKAAQQVNVPVPEGCTDRNAANYD 460
Query: 362 PTARSDDGSCQYTL 375
PTARSDDGSCQYTL
Sbjct: 461 PTARSDDGSCQYTL 474
>gi|359481752|ref|XP_002270571.2| PREDICTED: ribulose bisphosphate carboxylase/oxygenase activase 1,
chloroplastic-like [Vitis vinifera]
gi|297740331|emb|CBI30513.3| unnamed protein product [Vitis vinifera]
Length = 474
Score = 714 bits (1843), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 334/375 (89%), Positives = 357/375 (95%)
Query: 1 MGTGTHYAVMSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPL 60
M +GTHYAVMSSYDYIS GLR YNLDNT+DG YIAPAFMDKLVVHITKNFM+LPNIKVPL
Sbjct: 100 MDSGTHYAVMSSYDYISTGLRQYNLDNTMDGFYIAPAFMDKLVVHITKNFMTLPNIKVPL 159
Query: 61 ILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKK 120
ILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADII+K
Sbjct: 160 ILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIRK 219
Query: 121 GKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVP 180
GKMCCL INDLDAGAGR+GGTTQYTVNNQMVNATLMNIADNPT VQLPGMYNKEENPRVP
Sbjct: 220 GKMCCLFINDLDAGAGRLGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRVP 279
Query: 181 IIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPG 240
IIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVC GIFR+DN+ +D+VKLVDTFPG
Sbjct: 280 IIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCTGIFRSDNIPKEDMVKLVDTFPG 339
Query: 241 QSIDFFGALRARVYDDEVRKWISGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNM 300
QSIDFFGALRARVYDDEVRKW++ VGV IGK LVNSKE PTFE+P+MT++KLLEYGNM
Sbjct: 340 QSIDFFGALRARVYDDEVRKWVASVGVEGIGKKLVNSKEGPPTFEKPKMTLDKLLEYGNM 399
Query: 301 IVQEQENVKRVQLADKYLSEAALGEANEDAIQSGNFYGKAAQQMNVPVPEGCTDPTAENF 360
+VQEQENVKRVQLADKYLSEAALG+ANEDAI+SG+FYGKAAQQ+N+PVPEGCTDP+A NF
Sbjct: 400 LVQEQENVKRVQLADKYLSEAALGDANEDAIKSGSFYGKAAQQVNLPVPEGCTDPSANNF 459
Query: 361 DPTARSDDGSCQYTL 375
DPTARSDDGSC Y +
Sbjct: 460 DPTARSDDGSCLYQI 474
>gi|115334981|gb|ABI94078.1| chloroplast ribulose-1,5-bisphosphate carboxylase/oxygenase
activase large protein isoform [Acer rubrum]
Length = 474
Score = 712 bits (1839), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 337/374 (90%), Positives = 358/374 (95%), Gaps = 1/374 (0%)
Query: 2 GTGTHYAVMSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLI 61
GTGTHYAVMSSYDYIS GLRTY L+N++DG YIAP FM KLVVHITKNFMSLPNIK+PLI
Sbjct: 102 GTGTHYAVMSSYDYISTGLRTY-LENSMDGFYIAPVFMGKLVVHITKNFMSLPNIKIPLI 160
Query: 62 LGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKG 121
LGIWGGKGQGKSFQCELVFAKMGI PIMMSAGELESGNAGEPAKLIRQRYREAADIIKKG
Sbjct: 161 LGIWGGKGQGKSFQCELVFAKMGITPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKG 220
Query: 122 KMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPI 181
KMCCL INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPT VQLPGMYNKEENPRVPI
Sbjct: 221 KMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTSVQLPGMYNKEENPRVPI 280
Query: 182 IVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQ 241
IVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFR+DNVAD++++KLVDTFPGQ
Sbjct: 281 IVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRSDNVADNELIKLVDTFPGQ 340
Query: 242 SIDFFGALRARVYDDEVRKWISGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMI 301
SIDFFGALRARVYDDEVRKWISG+GV SIGK+LVNSK PTFEQP+MT++KLLEYGNM+
Sbjct: 341 SIDFFGALRARVYDDEVRKWISGIGVDSIGKNLVNSKNGPPTFEQPKMTIDKLLEYGNML 400
Query: 302 VQEQENVKRVQLADKYLSEAALGEANEDAIQSGNFYGKAAQQMNVPVPEGCTDPTAENFD 361
VQEQENVKRVQLADKYLSEAALG+AN+DAI+ G+FYGKAAQQ+NVPVPEGCTD A N+D
Sbjct: 401 VQEQENVKRVQLADKYLSEAALGDANDDAIKRGSFYGKAAQQVNVPVPEGCTDRNAANYD 460
Query: 362 PTARSDDGSCQYTL 375
PTARSDDGSCQYTL
Sbjct: 461 PTARSDDGSCQYTL 474
>gi|255566442|ref|XP_002524206.1| Ribulose bisphosphate carboxylase/oxygenase activase 1, chloroplast
precursor, putative [Ricinus communis]
gi|223536483|gb|EEF38130.1| Ribulose bisphosphate carboxylase/oxygenase activase 1, chloroplast
precursor, putative [Ricinus communis]
Length = 473
Score = 711 bits (1836), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 333/372 (89%), Positives = 352/372 (94%)
Query: 4 GTHYAVMSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILG 63
GTHYAVMSSY+Y+S GLR YNLDN +DG YIAPAFMDKLVVHITKNFM+LPNIK+PLILG
Sbjct: 102 GTHYAVMSSYEYLSTGLRQYNLDNNMDGFYIAPAFMDKLVVHITKNFMTLPNIKIPLILG 161
Query: 64 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 123
IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAD+IKKGKM
Sbjct: 162 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADMIKKGKM 221
Query: 124 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 183
CCL INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPT VQLPGMYNKEENPRVPIIV
Sbjct: 222 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRVPIIV 281
Query: 184 TGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSI 243
TGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVC GIF+ D VA +D+VKLVDTFPGQSI
Sbjct: 282 TGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCTGIFKTDGVAPEDVVKLVDTFPGQSI 341
Query: 244 DFFGALRARVYDDEVRKWISGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQ 303
DFFGALRARVYDDEVRKWI GVGV IGKSLVNSKE PTFEQP+MT+EKLLEYGNM+VQ
Sbjct: 342 DFFGALRARVYDDEVRKWIGGVGVEKIGKSLVNSKEGPPTFEQPKMTIEKLLEYGNMLVQ 401
Query: 304 EQENVKRVQLADKYLSEAALGEANEDAIQSGNFYGKAAQQMNVPVPEGCTDPTAENFDPT 363
EQENVKRVQLADKY+SEAALGEAN+D+I+ G FYGKAAQQ+N+PVPEGCTDPTA+NFDPT
Sbjct: 402 EQENVKRVQLADKYMSEAALGEANQDSIERGTFYGKAAQQVNIPVPEGCTDPTAQNFDPT 461
Query: 364 ARSDDGSCQYTL 375
ARSDDGSC Y
Sbjct: 462 ARSDDGSCTYKF 473
>gi|147856329|emb|CAN83893.1| hypothetical protein VITISV_039112 [Vitis vinifera]
Length = 472
Score = 709 bits (1830), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 334/373 (89%), Positives = 353/373 (94%)
Query: 1 MGTGTHYAVMSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPL 60
M +GTHYAVMSSY+Y+S GLR YNLDN +DG YIAPAFMDKLVVHITKNFM+LPNIKVPL
Sbjct: 100 MQSGTHYAVMSSYEYLSTGLRQYNLDNNMDGFYIAPAFMDKLVVHITKNFMTLPNIKVPL 159
Query: 61 ILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKK 120
ILGIWGGKGQGKSFQCELVF+KMGINPIMMSAGELESGNAGEPAKLIRQRYREAADII+K
Sbjct: 160 ILGIWGGKGQGKSFQCELVFSKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIRK 219
Query: 121 GKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVP 180
GKMCCL INDLDAGAGR+GGTTQYTVNNQMVNATLMNIADNPT VQLPGMYNKEENPRVP
Sbjct: 220 GKMCCLFINDLDAGAGRLGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRVP 279
Query: 181 IIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPG 240
IIVTGNDFSTLYAPLIRDGRMEKFYWAP REDRIGVCKGIFR+DNV DDDIVK+VDTFPG
Sbjct: 280 IIVTGNDFSTLYAPLIRDGRMEKFYWAPNREDRIGVCKGIFRSDNVPDDDIVKIVDTFPG 339
Query: 241 QSIDFFGALRARVYDDEVRKWISGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNM 300
QSIDFFGALRARVYDDEVRKWISGVGV IGK LVNSKE PTFEQP+MT+EKLLEYGNM
Sbjct: 340 QSIDFFGALRARVYDDEVRKWISGVGVDFIGKKLVNSKEGPPTFEQPKMTIEKLLEYGNM 399
Query: 301 IVQEQENVKRVQLADKYLSEAALGEANEDAIQSGNFYGKAAQQMNVPVPEGCTDPTAENF 360
+V EQENVKRVQLADKYLSEAALG+AN D+I+ G FYGKAAQQ+ VPVPEGCTDP+A NF
Sbjct: 400 LVMEQENVKRVQLADKYLSEAALGDANVDSIERGTFYGKAAQQVGVPVPEGCTDPSAANF 459
Query: 361 DPTARSDDGSCQY 373
DPTARSD+GSCQY
Sbjct: 460 DPTARSDNGSCQY 472
>gi|225434859|ref|XP_002282236.1| PREDICTED: ribulose bisphosphate carboxylase/oxygenase activase 2,
chloroplastic isoform 1 [Vitis vinifera]
gi|297746032|emb|CBI16088.3| unnamed protein product [Vitis vinifera]
Length = 472
Score = 709 bits (1830), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 334/373 (89%), Positives = 353/373 (94%)
Query: 1 MGTGTHYAVMSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPL 60
M +GTHYAVMSSY+Y+S GLR YNLDN +DG YIAPAFMDKLVVHITKNFM+LPNIKVPL
Sbjct: 100 MQSGTHYAVMSSYEYLSTGLRQYNLDNNMDGFYIAPAFMDKLVVHITKNFMTLPNIKVPL 159
Query: 61 ILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKK 120
ILGIWGGKGQGKSFQCELVF+KMGINPIMMSAGELESGNAGEPAKLIRQRYREAADII+K
Sbjct: 160 ILGIWGGKGQGKSFQCELVFSKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIRK 219
Query: 121 GKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVP 180
GKMCCL INDLDAGAGR+GGTTQYTVNNQMVNATLMNIADNPT VQLPGMYNKEENPRVP
Sbjct: 220 GKMCCLFINDLDAGAGRLGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRVP 279
Query: 181 IIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPG 240
IIVTGNDFSTLYAPLIRDGRMEKFYWAP REDRIGVCKGIFR+DNV DDDIVK+VDTFPG
Sbjct: 280 IIVTGNDFSTLYAPLIRDGRMEKFYWAPNREDRIGVCKGIFRSDNVPDDDIVKIVDTFPG 339
Query: 241 QSIDFFGALRARVYDDEVRKWISGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNM 300
QSIDFFGALRARVYDDEVRKWISGVGV IGK LVNSKE PTFEQP+MT+EKLLEYGNM
Sbjct: 340 QSIDFFGALRARVYDDEVRKWISGVGVDFIGKKLVNSKEGPPTFEQPKMTIEKLLEYGNM 399
Query: 301 IVQEQENVKRVQLADKYLSEAALGEANEDAIQSGNFYGKAAQQMNVPVPEGCTDPTAENF 360
+V EQENVKRVQLADKYLSEAALG+AN D+I+ G FYGKAAQQ+ VPVPEGCTDP+A NF
Sbjct: 400 LVMEQENVKRVQLADKYLSEAALGDANVDSIERGTFYGKAAQQVGVPVPEGCTDPSAANF 459
Query: 361 DPTARSDDGSCQY 373
DPTARSD+GSCQY
Sbjct: 460 DPTARSDNGSCQY 472
>gi|255584538|ref|XP_002532996.1| Ribulose bisphosphate carboxylase/oxygenase activase 1, chloroplast
precursor, putative [Ricinus communis]
gi|223527225|gb|EEF29388.1| Ribulose bisphosphate carboxylase/oxygenase activase 1, chloroplast
precursor, putative [Ricinus communis]
Length = 474
Score = 708 bits (1828), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 332/375 (88%), Positives = 356/375 (94%)
Query: 1 MGTGTHYAVMSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPL 60
MGTGTHYAVMSSYDY+SQGLR YNLDN +DG YIAPAFMDK+VVHITKNF++LPNIKVPL
Sbjct: 100 MGTGTHYAVMSSYDYLSQGLRQYNLDNNMDGFYIAPAFMDKVVVHITKNFLNLPNIKVPL 159
Query: 61 ILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKK 120
ILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADII+K
Sbjct: 160 ILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIRK 219
Query: 121 GKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVP 180
GKMCCL INDLDAGAGR+GGTTQYTVNNQMVNATLMNIADNPT VQLPGMYNKEENPRVP
Sbjct: 220 GKMCCLFINDLDAGAGRLGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRVP 279
Query: 181 IIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPG 240
IIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVC GIFR DNV +DIVKLVDTFPG
Sbjct: 280 IIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCTGIFRTDNVPKEDIVKLVDTFPG 339
Query: 241 QSIDFFGALRARVYDDEVRKWISGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNM 300
QSIDFFGA+RARVYDDEVR WIS +GV ++GK LVNSKEA PTFEQP+MT++KLLEYG+M
Sbjct: 340 QSIDFFGAIRARVYDDEVRAWISTIGVENVGKRLVNSKEAPPTFEQPKMTLDKLLEYGSM 399
Query: 301 IVQEQENVKRVQLADKYLSEAALGEANEDAIQSGNFYGKAAQQMNVPVPEGCTDPTAENF 360
+V+EQENVKRVQLADKYL EAALG+AN+DAIQ+G+FYGKAAQQ+ VPVPEGCTDP+AENF
Sbjct: 400 LVKEQENVKRVQLADKYLKEAALGDANDDAIQNGSFYGKAAQQVKVPVPEGCTDPSAENF 459
Query: 361 DPTARSDDGSCQYTL 375
DPTARSDDGSC Y
Sbjct: 460 DPTARSDDGSCLYEF 474
>gi|12620883|gb|AAG61121.1|AF329935_1 ribulose-1,5-bisphosphate carboxylase/oxygenase activase 2
[Gossypium hirsutum]
Length = 435
Score = 708 bits (1827), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 336/375 (89%), Positives = 351/375 (93%)
Query: 1 MGTGTHYAVMSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPL 60
M GTHYAVMSSY+YISQGL+TYNLDN +DG YIAPAFMDKLVVHI+KNFMSLPNIKVPL
Sbjct: 61 MNDGTHYAVMSSYEYISQGLKTYNLDNNMDGFYIAPAFMDKLVVHISKNFMSLPNIKVPL 120
Query: 61 ILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKK 120
ILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKK
Sbjct: 121 ILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKK 180
Query: 121 GKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVP 180
GKMC L INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPT VQLPGMYNKEENPRVP
Sbjct: 181 GKMCALFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRVP 240
Query: 181 IIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPG 240
IIVTGNDFSTLYAPLIRDGRMEKFYWAPTR+DRIGVCKGIFR D V D+DIVKLVDTFPG
Sbjct: 241 IIVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRIGVCKGIFRTDGVRDEDIVKLVDTFPG 300
Query: 241 QSIDFFGALRARVYDDEVRKWISGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNM 300
QSIDFFGALRARVYDDEVRKWIS VGV S+GK LVNS+E PTFEQP+MT+EKLLEYGNM
Sbjct: 301 QSIDFFGALRARVYDDEVRKWISEVGVASVGKKLVNSREGPPTFEQPKMTIEKLLEYGNM 360
Query: 301 IVQEQENVKRVQLADKYLSEAALGEANEDAIQSGNFYGKAAQQMNVPVPEGCTDPTAENF 360
+V EQENVKRVQLADKYLSEAALGEANED+I G FYGKAAQQ+ VPVPEGCTDP A+NF
Sbjct: 361 LVAEQENVKRVQLADKYLSEAALGEANEDSINRGTFYGKAAQQVGVPVPEGCTDPNADNF 420
Query: 361 DPTARSDDGSCQYTL 375
DPTARSDDG+C Y
Sbjct: 421 DPTARSDDGTCTYKF 435
>gi|357492323|ref|XP_003616450.1| Ribulose-1 5-bisphosphate carboxylase/oxygenase activase [Medicago
truncatula]
gi|355517785|gb|AES99408.1| Ribulose-1 5-bisphosphate carboxylase/oxygenase activase [Medicago
truncatula]
Length = 476
Score = 706 bits (1821), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 327/373 (87%), Positives = 356/373 (95%)
Query: 3 TGTHYAVMSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLIL 62
+GTHYAVMSSY+YIS GLR YNLDNT+DG YIAPAFMDKLVVHITKNF++LPNIKVPLIL
Sbjct: 103 SGTHYAVMSSYEYISTGLRQYNLDNTMDGFYIAPAFMDKLVVHITKNFLTLPNIKVPLIL 162
Query: 63 GIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGK 122
GIWGGKGQGKSFQ ELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREA+DII+KGK
Sbjct: 163 GIWGGKGQGKSFQAELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREASDIIRKGK 222
Query: 123 MCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPII 182
MCCL INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPT VQLPGMYNKEEN RVPII
Sbjct: 223 MCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENARVPII 282
Query: 183 VTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQS 242
VTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFR+DNV ++D+VK+VDTFPGQS
Sbjct: 283 VTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRHDNVPEEDVVKIVDTFPGQS 342
Query: 243 IDFFGALRARVYDDEVRKWISGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIV 302
IDFFGALRARVYDDEVRKWI+GVG+ +IGK LVNSKE PTF+QP+M++EKLLEYGNM+V
Sbjct: 343 IDFFGALRARVYDDEVRKWIAGVGIETIGKKLVNSKEGPPTFDQPKMSLEKLLEYGNMLV 402
Query: 303 QEQENVKRVQLADKYLSEAALGEANEDAIQSGNFYGKAAQQMNVPVPEGCTDPTAENFDP 362
QEQENVKRVQLADKYL AALG+AN+DAI+SG+FYGKAAQQ+N+P+PEGCTDP A+NFDP
Sbjct: 403 QEQENVKRVQLADKYLEGAALGDANQDAIKSGSFYGKAAQQVNIPIPEGCTDPNAKNFDP 462
Query: 363 TARSDDGSCQYTL 375
TARSDDG+C YT
Sbjct: 463 TARSDDGTCLYTF 475
>gi|290766481|gb|ADD60243.1| rubisco activase [Glycine max]
Length = 474
Score = 703 bits (1815), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 330/375 (88%), Positives = 355/375 (94%)
Query: 1 MGTGTHYAVMSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPL 60
M +GTHYAVMSSYDYIS GLR YNLDNT+DG YIAPAFMDK+VVHITKNF++LPNIKVPL
Sbjct: 100 MESGTHYAVMSSYDYISAGLRQYNLDNTMDGFYIAPAFMDKIVVHITKNFLNLPNIKVPL 159
Query: 61 ILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKK 120
ILGIWGGKGQGKSFQCELVFAKMGINPI+MSAGELESGNAGEPAKLIRQRYREAADII+K
Sbjct: 160 ILGIWGGKGQGKSFQCELVFAKMGINPIVMSAGELESGNAGEPAKLIRQRYREAADIIRK 219
Query: 121 GKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVP 180
GKMCCL INDLDAGAGR+GGTTQYTVNNQMVNATLMNIADNPT VQLPGMYNKEENPRVP
Sbjct: 220 GKMCCLFINDLDAGAGRLGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRVP 279
Query: 181 IIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPG 240
IIVTGNDFSTLYAPLIRDGRMEKFYWAPTR+DRIGVC+GIFR D V +DI+KLVDTF G
Sbjct: 280 IIVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRIGVCQGIFRTDGVLKEDIIKLVDTFLG 339
Query: 241 QSIDFFGALRARVYDDEVRKWISGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNM 300
QSIDFFGALRARVYDDEVRKWISGVGV +IGK LVNSKE PTFEQP+MT+ KLLEYGNM
Sbjct: 340 QSIDFFGALRARVYDDEVRKWISGVGVENIGKKLVNSKEGPPTFEQPKMTLSKLLEYGNM 399
Query: 301 IVQEQENVKRVQLADKYLSEAALGEANEDAIQSGNFYGKAAQQMNVPVPEGCTDPTAENF 360
+VQEQENVKRVQLADKYL+EAALG+AN+DAI++GNFYG+ AQQ++VPVPEGCTDPTAEN+
Sbjct: 400 LVQEQENVKRVQLADKYLNEAALGDANDDAIKTGNFYGQGAQQVHVPVPEGCTDPTAENY 459
Query: 361 DPTARSDDGSCQYTL 375
DPTARSDDGSC Y
Sbjct: 460 DPTARSDDGSCTYKF 474
>gi|78100212|gb|ABB20913.1| ribulose-1,5-bisphosphate carboxylase/oxygenase activase alpha 2
[Gossypium hirsutum]
Length = 421
Score = 703 bits (1814), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 332/375 (88%), Positives = 350/375 (93%)
Query: 1 MGTGTHYAVMSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPL 60
M GTHYAVMSSY+Y+SQGL+TYNLDN +DG YIAPAFMDKLVVHITKNFMSLPNIKVPL
Sbjct: 47 MNDGTHYAVMSSYEYLSQGLKTYNLDNNMDGFYIAPAFMDKLVVHITKNFMSLPNIKVPL 106
Query: 61 ILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKK 120
ILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKK
Sbjct: 107 ILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKK 166
Query: 121 GKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVP 180
GKMC L INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPT VQLPGMYNKEENPRVP
Sbjct: 167 GKMCALFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRVP 226
Query: 181 IIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPG 240
IIVTGNDFSTLYAPLIRDGRMEKFYWAPTR+DR+GVCKGIFR D + D+DIVKLVDTFPG
Sbjct: 227 IIVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRVGVCKGIFRTDGIPDEDIVKLVDTFPG 286
Query: 241 QSIDFFGALRARVYDDEVRKWISGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNM 300
QSIDFFGALRARVYDDEVRKWIS VGV +GK LVNS++ PTFEQP+MT+EKLLEYGNM
Sbjct: 287 QSIDFFGALRARVYDDEVRKWISDVGVAGVGKKLVNSRDGPPTFEQPKMTIEKLLEYGNM 346
Query: 301 IVQEQENVKRVQLADKYLSEAALGEANEDAIQSGNFYGKAAQQMNVPVPEGCTDPTAENF 360
+V EQENVKRVQLADKYLSEAALGEANED+I G FYGKAAQQ+ VPVPEGCTDP A+NF
Sbjct: 347 LVAEQENVKRVQLADKYLSEAALGEANEDSINRGTFYGKAAQQVGVPVPEGCTDPNADNF 406
Query: 361 DPTARSDDGSCQYTL 375
DPTARSDDG+C Y
Sbjct: 407 DPTARSDDGTCTYQF 421
>gi|356504250|ref|XP_003520910.1| PREDICTED: LOW QUALITY PROTEIN: ribulose bisphosphate
carboxylase/oxygenase activase 1, chloroplastic-like
[Glycine max]
Length = 474
Score = 701 bits (1810), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 329/375 (87%), Positives = 354/375 (94%)
Query: 1 MGTGTHYAVMSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPL 60
M +GTHYAVMSSYDYIS GLR YNLDNT+DG YIAPAFMDK+VVHITKNF++LPNIKVPL
Sbjct: 100 MESGTHYAVMSSYDYISAGLRQYNLDNTMDGFYIAPAFMDKIVVHITKNFLNLPNIKVPL 159
Query: 61 ILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKK 120
ILGIWGGKGQGKSFQCELVFAKMGINPI+MSAGELESGNAGEPAKLIRQRYREAADII+K
Sbjct: 160 ILGIWGGKGQGKSFQCELVFAKMGINPIVMSAGELESGNAGEPAKLIRQRYREAADIIRK 219
Query: 121 GKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVP 180
GKMCCL INDLDAGAGR+GGTTQYTVNNQMVNATLMNIADNPT VQLPGMYNKEENPRVP
Sbjct: 220 GKMCCLFINDLDAGAGRLGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRVP 279
Query: 181 IIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPG 240
IIVTGNDFSTLYAPLIRDGRMEKFYWAPTR+DRIGVC+GIFR D V +DI+KLVDTF G
Sbjct: 280 IIVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRIGVCQGIFRTDGVLKEDIIKLVDTFLG 339
Query: 241 QSIDFFGALRARVYDDEVRKWISGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNM 300
QSIDFFGALR RVYDDEVRKWISGVGV +IGK LVNSKE PTFEQP+MT+ KLLEYGNM
Sbjct: 340 QSIDFFGALRXRVYDDEVRKWISGVGVENIGKKLVNSKEGPPTFEQPKMTLSKLLEYGNM 399
Query: 301 IVQEQENVKRVQLADKYLSEAALGEANEDAIQSGNFYGKAAQQMNVPVPEGCTDPTAENF 360
+VQEQENVKRVQLADKYL+EAALG+AN+DAI++GNFYG+ AQQ++VPVPEGCTDPTAEN+
Sbjct: 400 LVQEQENVKRVQLADKYLNEAALGDANDDAIKTGNFYGQGAQQVHVPVPEGCTDPTAENY 459
Query: 361 DPTARSDDGSCQYTL 375
DPTARSDDGSC Y
Sbjct: 460 DPTARSDDGSCTYKF 474
>gi|357469233|ref|XP_003604901.1| Ribulose bisphosphate carboxylase/oxygenase activase [Medicago
truncatula]
gi|355505956|gb|AES87098.1| Ribulose bisphosphate carboxylase/oxygenase activase [Medicago
truncatula]
Length = 476
Score = 701 bits (1809), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 327/375 (87%), Positives = 353/375 (94%)
Query: 1 MGTGTHYAVMSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPL 60
M GTHYAVMSSYDYIS GLR YN+DNT+DGLYIAPAFMDKLVVHITKNF++LPNIK+PL
Sbjct: 102 MDAGTHYAVMSSYDYISTGLRQYNMDNTVDGLYIAPAFMDKLVVHITKNFLNLPNIKIPL 161
Query: 61 ILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKK 120
ILGIWGGKGQGKSFQCELVFAKMGI+PIMMSAGELESGNAGEPAKLIRQRYREA+DII+K
Sbjct: 162 ILGIWGGKGQGKSFQCELVFAKMGISPIMMSAGELESGNAGEPAKLIRQRYREASDIIRK 221
Query: 121 GKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVP 180
GKMCCL INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPT VQLPGMYNKEEN RVP
Sbjct: 222 GKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENARVP 281
Query: 181 IIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPG 240
IIVTGNDFSTLYAPLIRDGRMEKFYWAPTR+DR+GVC+GIFR D V DDIVK+VDTFPG
Sbjct: 282 IIVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRVGVCQGIFRTDGVPKDDIVKIVDTFPG 341
Query: 241 QSIDFFGALRARVYDDEVRKWISGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNM 300
QSIDFFGALRARVYDDEVR WISG+GV SIGK LVNSKE PTFEQP+MT++KLLEYGNM
Sbjct: 342 QSIDFFGALRARVYDDEVRNWISGIGVESIGKRLVNSKEGPPTFEQPKMTIDKLLEYGNM 401
Query: 301 IVQEQENVKRVQLADKYLSEAALGEANEDAIQSGNFYGKAAQQMNVPVPEGCTDPTAENF 360
+VQEQENVKRVQLADKYLSEAALG+AN+DAI++GNFYG+ AQQ+ +PV EGC DP+AEN+
Sbjct: 402 LVQEQENVKRVQLADKYLSEAALGDANDDAIKTGNFYGQGAQQVPLPVQEGCADPSAENY 461
Query: 361 DPTARSDDGSCQYTL 375
DPTARSDDGSC YT
Sbjct: 462 DPTARSDDGSCTYTF 476
>gi|68565782|sp|Q7X9A0.1|RCA1_LARTR RecName: Full=Ribulose bisphosphate carboxylase/oxygenase activase
1, chloroplastic; Short=RA 1; Short=RuBisCO activase 1;
AltName: Full=RuBisCO activase alpha form; Flags:
Precursor
gi|32481065|gb|AAP83929.1| Rubisco activase alpha form precursor [Larrea tridentata]
Length = 476
Score = 700 bits (1807), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 335/377 (88%), Positives = 352/377 (93%), Gaps = 2/377 (0%)
Query: 1 MGTGTHYAVMSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPL 60
M +GTHYAVMSSYDYISQGLR YNLDN +DG YIAPAFMDKLVVHITKNF+SLPNIK+PL
Sbjct: 100 MQSGTHYAVMSSYDYISQGLRQYNLDNNMDGFYIAPAFMDKLVVHITKNFLSLPNIKIPL 159
Query: 61 ILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKK 120
ILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKK
Sbjct: 160 ILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKK 219
Query: 121 GKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVP 180
GKMCCL INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPT VQLPGMYNKEENPRVP
Sbjct: 220 GKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRVP 279
Query: 181 IIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPG 240
IIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFR DNVADDDIVKLVDTFPG
Sbjct: 280 IIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRTDNVADDDIVKLVDTFPG 339
Query: 241 QSIDFFGALRARVYDDEVRKWISGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNM 300
QSIDFFGALRARVY DEVRKW+S VGV +IGK LVNSKE P+FEQP+MT++KLL YG M
Sbjct: 340 QSIDFFGALRARVYHDEVRKWVSEVGVDTIGKKLVNSKEGPPSFEQPKMTIDKLLGYGGM 399
Query: 301 IVQEQENVKRVQLADKYLSEAALGEANEDAIQSGNFY-GKAAQQM-NVPVPEGCTDPTAE 358
+VQEQENVKRVQLADKY+SEAALG+AN DAI+ G FY G+AAQQ+ NVPVPEGCTDP A
Sbjct: 400 LVQEQENVKRVQLADKYMSEAALGDANNDAIKRGTFYGGQAAQQVGNVPVPEGCTDPQAT 459
Query: 359 NFDPTARSDDGSCQYTL 375
N+DPTARSDDGSC Y
Sbjct: 460 NYDPTARSDDGSCVYKF 476
>gi|363806750|ref|NP_001242531.1| ribulose bisphosphate carboxylase/oxygenase activase 1,
chloroplastic-like [Glycine max]
gi|290766483|gb|ADD60244.1| rubisco activase [Glycine max]
Length = 478
Score = 697 bits (1799), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 325/372 (87%), Positives = 348/372 (93%)
Query: 3 TGTHYAVMSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLIL 62
TGTHYAVMSS++Y+S GL+ YNLDN +DG YIAPAFMDKLV HITKNFM+LPNIKVPLIL
Sbjct: 106 TGTHYAVMSSFEYLSTGLKQYNLDNNMDGFYIAPAFMDKLVAHITKNFMTLPNIKVPLIL 165
Query: 63 GIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGK 122
GIWGGKGQGKSFQCELVFAKMGINPIMM AGELESGNAGEPAKLIRQRYREAADII KGK
Sbjct: 166 GIWGGKGQGKSFQCELVFAKMGINPIMMGAGELESGNAGEPAKLIRQRYREAADIISKGK 225
Query: 123 MCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPII 182
MCCL INDLD GAGR+GGTTQYTVNNQMVNATLMNIADNPT VQLPGMYNK+ENPRVPII
Sbjct: 226 MCCLFINDLDVGAGRLGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENPRVPII 285
Query: 183 VTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQS 242
VTGNDFSTLYAPLIRDGRMEKFYWAPTR+DR+GVCKGIFR DNV +D+IVKLVDTFPGQS
Sbjct: 286 VTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRVGVCKGIFRTDNVPEDEIVKLVDTFPGQS 345
Query: 243 IDFFGALRARVYDDEVRKWISGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIV 302
IDFFGALRARVYDDEVRKWISGVGV IGK LVNSKE PTF+QP+MT+ KLLEYGNM+V
Sbjct: 346 IDFFGALRARVYDDEVRKWISGVGVDLIGKKLVNSKEGPPTFDQPKMTLSKLLEYGNMLV 405
Query: 303 QEQENVKRVQLADKYLSEAALGEANEDAIQSGNFYGKAAQQMNVPVPEGCTDPTAENFDP 362
QEQENVKRVQLADKYL+EAALG+AN+DAI+ G FYGKAAQQ+ +PVPEGCTDP A NFDP
Sbjct: 406 QEQENVKRVQLADKYLNEAALGDANQDAIKRGTFYGKAAQQVKIPVPEGCTDPNASNFDP 465
Query: 363 TARSDDGSCQYT 374
TARSDDG+C YT
Sbjct: 466 TARSDDGTCLYT 477
>gi|358248528|ref|NP_001240152.1| ribulose bisphosphate carboxylase/oxygenase activase 1,
chloroplastic-like [Glycine max]
gi|290766479|gb|ADD60242.1| alpha-form rubisco activase [Glycine max]
gi|290766489|gb|ADD60247.1| alpha-form rubisco activase [Glycine max]
Length = 478
Score = 697 bits (1799), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 326/372 (87%), Positives = 347/372 (93%)
Query: 3 TGTHYAVMSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLIL 62
TGTHYA+MSSY+Y+S GL+ YNLDN +DG YIAPAFMDKLVVHI+KNFM+LPNIKVPLIL
Sbjct: 106 TGTHYAIMSSYEYLSTGLKQYNLDNNMDGFYIAPAFMDKLVVHISKNFMTLPNIKVPLIL 165
Query: 63 GIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGK 122
GIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAD+IKKGK
Sbjct: 166 GIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADMIKKGK 225
Query: 123 MCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPII 182
MC L INDLDAGAGR+GGTTQYTVNNQMVNATLMNIADNPT VQLPGMYNKEENPRVPII
Sbjct: 226 MCALFINDLDAGAGRLGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRVPII 285
Query: 183 VTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQS 242
VTGNDFSTLYAPLIRDGRMEKFYWAPTR+DR+GVC GIFR DNV DDIVKLVDTFPGQS
Sbjct: 286 VTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRVGVCNGIFRTDNVPKDDIVKLVDTFPGQS 345
Query: 243 IDFFGALRARVYDDEVRKWISGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIV 302
IDFFGALRARVYDDEVRKWIS VGV IGK LVNSKE PTF+QP+MT+ KLLEYGNM+V
Sbjct: 346 IDFFGALRARVYDDEVRKWISVVGVDFIGKKLVNSKEGPPTFDQPKMTLSKLLEYGNMLV 405
Query: 303 QEQENVKRVQLADKYLSEAALGEANEDAIQSGNFYGKAAQQMNVPVPEGCTDPTAENFDP 362
QEQENVKRVQLADKYL EAALG+AN+D+I G FYGKAAQQ+N+PVPEGCTDP A NFDP
Sbjct: 406 QEQENVKRVQLADKYLKEAALGDANQDSINRGTFYGKAAQQVNIPVPEGCTDPNASNFDP 465
Query: 363 TARSDDGSCQYT 374
TARSDDG+C YT
Sbjct: 466 TARSDDGTCLYT 477
>gi|118486739|gb|ABK95205.1| unknown [Populus trichocarpa]
Length = 475
Score = 697 bits (1798), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 329/373 (88%), Positives = 351/373 (94%), Gaps = 1/373 (0%)
Query: 2 GTGTHYAVMSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLI 61
GTGTH V+SSY+Y+SQGLRTYNLDN +DG YIAPAFMDK+VVHI+KNFMSLPNIKVPLI
Sbjct: 103 GTGTHNPVLSSYEYLSQGLRTYNLDNMMDGFYIAPAFMDKIVVHISKNFMSLPNIKVPLI 162
Query: 62 LGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKK- 120
LGIWGGKGQGKSFQCELVFAKMGI+PIMMSAGELESGNAGEPAKLIRQRYREAADIIKK
Sbjct: 163 LGIWGGKGQGKSFQCELVFAKMGISPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKK 222
Query: 121 GKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVP 180
GKMCCL INDLDAGAGR+GGTTQYTVNNQMVNATLMNIADNPT VQLPGMYNKE+NPRVP
Sbjct: 223 GKMCCLFINDLDAGAGRLGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEDNPRVP 282
Query: 181 IIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPG 240
IIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVC GIF+ DNV +DDIVKLVDTFPG
Sbjct: 283 IIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCIGIFKTDNVPEDDIVKLVDTFPG 342
Query: 241 QSIDFFGALRARVYDDEVRKWISGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNM 300
QSIDFFGALRARVYDDEVRKW+SGVGV SIGK LVNS+E PTFEQP MT+EKL EYGNM
Sbjct: 343 QSIDFFGALRARVYDDEVRKWVSGVGVESIGKKLVNSREGPPTFEQPPMTVEKLFEYGNM 402
Query: 301 IVQEQENVKRVQLADKYLSEAALGEANEDAIQSGNFYGKAAQQMNVPVPEGCTDPTAENF 360
+V+EQENVKRVQLADKYLS+AALGEAN+DAI+ G FYG+AAQQ+ VP+PEGCTDP A NF
Sbjct: 403 LVKEQENVKRVQLADKYLSDAALGEANQDAIERGTFYGQAAQQVKVPIPEGCTDPNAANF 462
Query: 361 DPTARSDDGSCQY 373
DPTARSDDGSC Y
Sbjct: 463 DPTARSDDGSCSY 475
>gi|449441384|ref|XP_004138462.1| PREDICTED: ribulose bisphosphate carboxylase/oxygenase activase 1,
chloroplastic-like [Cucumis sativus]
Length = 474
Score = 695 bits (1794), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 326/374 (87%), Positives = 347/374 (92%)
Query: 2 GTGTHYAVMSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLI 61
G GTH V+SSY+Y+S GLR YN DN +DG YIAPAFMDKLVVHI+KNFM LPNIKVPLI
Sbjct: 101 GAGTHDPVLSSYEYLSAGLRQYNFDNNVDGFYIAPAFMDKLVVHISKNFMKLPNIKVPLI 160
Query: 62 LGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKG 121
LGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKG
Sbjct: 161 LGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKG 220
Query: 122 KMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPI 181
KMC L INDLDAGAGR+GGTTQYTVNNQMVNATLMNIADNPT VQLPGMYNKEENPRVPI
Sbjct: 221 KMCALFINDLDAGAGRLGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRVPI 280
Query: 182 IVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQ 241
IVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVC GIFR+DN+ +DIVKLVDTFPGQ
Sbjct: 281 IVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCSGIFRSDNIPKEDIVKLVDTFPGQ 340
Query: 242 SIDFFGALRARVYDDEVRKWISGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMI 301
SIDFFGALRARVYDDEVR W+ VGV +I K LVNSKE PTFEQP+MT+EKLLEYGNM+
Sbjct: 341 SIDFFGALRARVYDDEVRNWVCSVGVENIAKKLVNSKEGPPTFEQPKMTLEKLLEYGNML 400
Query: 302 VQEQENVKRVQLADKYLSEAALGEANEDAIQSGNFYGKAAQQMNVPVPEGCTDPTAENFD 361
VQEQENVKRVQLADKYLSEAALG+ANEDAI+SG FYGKAAQQ+++P+PEGCTDP A+NFD
Sbjct: 401 VQEQENVKRVQLADKYLSEAALGDANEDAIKSGTFYGKAAQQVSLPIPEGCTDPNADNFD 460
Query: 362 PTARSDDGSCQYTL 375
PTARSDDGSC Y L
Sbjct: 461 PTARSDDGSCNYVL 474
>gi|118489105|gb|ABK96359.1| unknown [Populus trichocarpa x Populus deltoides]
Length = 476
Score = 694 bits (1792), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 328/375 (87%), Positives = 351/375 (93%), Gaps = 1/375 (0%)
Query: 2 GTGTHYAVMSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLI 61
GTGTH ++SSY+Y+SQGLRTYNLDN +DG YIAPAFMDKLVVHI+KNFMSLPNIKVPLI
Sbjct: 102 GTGTHNPILSSYEYLSQGLRTYNLDNNMDGYYIAPAFMDKLVVHISKNFMSLPNIKVPLI 161
Query: 62 LGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKK- 120
LGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKK
Sbjct: 162 LGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKK 221
Query: 121 GKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVP 180
GKMCCL INDLDAGAGR+GGTTQYTVNNQMVNATLMNIADNPT VQLPGMYNKE+NPRVP
Sbjct: 222 GKMCCLFINDLDAGAGRLGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEDNPRVP 281
Query: 181 IIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPG 240
IIVTGNDFSTLYAPLIRDGRMEKFYWAPTR+DRIGVC GIF++D +A +DIVKLVDTFPG
Sbjct: 282 IIVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRIGVCIGIFKSDKIAKEDIVKLVDTFPG 341
Query: 241 QSIDFFGALRARVYDDEVRKWISGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNM 300
QSIDFFGALRARVYDDEVRKWISGVGV SIGK LVNS++ PTFEQP+MT+EKLLEYGNM
Sbjct: 342 QSIDFFGALRARVYDDEVRKWISGVGVDSIGKKLVNSRDGPPTFEQPKMTIEKLLEYGNM 401
Query: 301 IVQEQENVKRVQLADKYLSEAALGEANEDAIQSGNFYGKAAQQMNVPVPEGCTDPTAENF 360
+VQEQENVKRVQLADKYLSEA+LGEAN+D+I G FYG+AAQQ+ VPV EGCTDP A NF
Sbjct: 402 LVQEQENVKRVQLADKYLSEASLGEANQDSIDRGTFYGQAAQQVKVPVAEGCTDPNAANF 461
Query: 361 DPTARSDDGSCQYTL 375
DPTARSDDGSC Y
Sbjct: 462 DPTARSDDGSCTYKF 476
>gi|118487547|gb|ABK95600.1| unknown [Populus trichocarpa]
Length = 476
Score = 694 bits (1791), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 327/375 (87%), Positives = 350/375 (93%), Gaps = 1/375 (0%)
Query: 2 GTGTHYAVMSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLI 61
GTGTH V++SY+Y+SQGLRTYNLDN +DG YIAPAFMDKLVVHI+KNFMSLPNIKVPLI
Sbjct: 102 GTGTHNPVLNSYEYLSQGLRTYNLDNNMDGFYIAPAFMDKLVVHISKNFMSLPNIKVPLI 161
Query: 62 LGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKK- 120
LG+WGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKK
Sbjct: 162 LGVWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKK 221
Query: 121 GKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVP 180
GKMCCL INDLDAGAGR+GGTTQYTVNNQMVNATLMNIADNPT VQLPGMYNKEENPRVP
Sbjct: 222 GKMCCLFINDLDAGAGRLGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRVP 281
Query: 181 IIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPG 240
IIVTGNDFSTLYAPLIRDGRMEKFYWAPTR+DRIGVC GIF++D + +DIVKLVDTFPG
Sbjct: 282 IIVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRIGVCIGIFKSDKIPKEDIVKLVDTFPG 341
Query: 241 QSIDFFGALRARVYDDEVRKWISGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNM 300
QSIDFFGALRARVYDDEVRKW+SGVGV SIGK LVNS+E PTFEQP+MT+EKLLEYGNM
Sbjct: 342 QSIDFFGALRARVYDDEVRKWVSGVGVDSIGKKLVNSREGPPTFEQPKMTIEKLLEYGNM 401
Query: 301 IVQEQENVKRVQLADKYLSEAALGEANEDAIQSGNFYGKAAQQMNVPVPEGCTDPTAENF 360
+VQEQENVKRVQLADKYLSEA+LGEAN+D+I G FYG+AAQQ+ VPV EGCTDP A NF
Sbjct: 402 LVQEQENVKRVQLADKYLSEASLGEANQDSIDRGTFYGQAAQQVKVPVAEGCTDPNAANF 461
Query: 361 DPTARSDDGSCQYTL 375
DPTARSDDGSC Y
Sbjct: 462 DPTARSDDGSCTYKF 476
>gi|13430336|gb|AAK25800.1|AF338239_1 rubisco activase [Zantedeschia aethiopica]
Length = 426
Score = 694 bits (1790), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 325/375 (86%), Positives = 353/375 (94%)
Query: 1 MGTGTHYAVMSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPL 60
MG GTH V+SSY+YIS GLR++NLDNT++GLYIAPAFMDKLVVHITKNFM+LPNIK+PL
Sbjct: 52 MGDGTHNPVLSSYEYISTGLRSFNLDNTVNGLYIAPAFMDKLVVHITKNFMNLPNIKIPL 111
Query: 61 ILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKK 120
ILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADII+K
Sbjct: 112 ILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIRK 171
Query: 121 GKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVP 180
GKMCCL INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPT VQLPGMYNK+ENPRVP
Sbjct: 172 GKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENPRVP 231
Query: 181 IIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPG 240
IIVTGNDFSTLYAPLIRDGRMEKFYWAPTR+DR+GVC GIFR+DNV +D++KLVDTFPG
Sbjct: 232 IIVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRVGVCTGIFRSDNVPKEDVIKLVDTFPG 291
Query: 241 QSIDFFGALRARVYDDEVRKWISGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNM 300
QSIDFFGALRARVYDDEVRKWI+ +GV +GK LVNS E PTF QP+MT++KLLEYGNM
Sbjct: 292 QSIDFFGALRARVYDDEVRKWIAEIGVDGVGKRLVNSLEGPPTFAQPKMTLDKLLEYGNM 351
Query: 301 IVQEQENVKRVQLADKYLSEAALGEANEDAIQSGNFYGKAAQQMNVPVPEGCTDPTAENF 360
+VQEQENVKRVQLADKYLSEAALG+AN+DAI++G+FYGKAAQQ NVPVPEGCTD A NF
Sbjct: 352 LVQEQENVKRVQLADKYLSEAALGDANQDAIKTGSFYGKAAQQANVPVPEGCTDRNATNF 411
Query: 361 DPTARSDDGSCQYTL 375
DPTARSDDGSC YTL
Sbjct: 412 DPTARSDDGSCLYTL 426
>gi|13430332|gb|AAK25798.1|AF338237_1 rubisco activase, partial [Zantedeschia aethiopica]
Length = 436
Score = 694 bits (1790), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 325/375 (86%), Positives = 353/375 (94%)
Query: 1 MGTGTHYAVMSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPL 60
MG GTH V+SSY+YIS GLR++NLDNT++GLYIAPAFMDKLVVHITKNFM+LPNIK+PL
Sbjct: 62 MGDGTHNPVLSSYEYISTGLRSFNLDNTVNGLYIAPAFMDKLVVHITKNFMNLPNIKIPL 121
Query: 61 ILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKK 120
ILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADII+K
Sbjct: 122 ILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIRK 181
Query: 121 GKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVP 180
GKMCCL INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPT VQLPGMYNK+ENPRVP
Sbjct: 182 GKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENPRVP 241
Query: 181 IIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPG 240
IIVTGNDFSTLYAPLIRDGRMEKFYWAPTR+DR+GVC GIFR+DNV +D++KLVDTFPG
Sbjct: 242 IIVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRVGVCTGIFRSDNVPKEDVIKLVDTFPG 301
Query: 241 QSIDFFGALRARVYDDEVRKWISGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNM 300
QSIDFFGALRARVYDDEVRKWI+ +GV +GK LVNS E PTF QP+MT++KLLEYGNM
Sbjct: 302 QSIDFFGALRARVYDDEVRKWIAEIGVDGVGKRLVNSLEGPPTFAQPKMTLDKLLEYGNM 361
Query: 301 IVQEQENVKRVQLADKYLSEAALGEANEDAIQSGNFYGKAAQQMNVPVPEGCTDPTAENF 360
+VQEQENVKRVQLADKYLSEAALG+AN+DAI++G+FYGKAAQQ NVPVPEGCTD A NF
Sbjct: 362 LVQEQENVKRVQLADKYLSEAALGDANQDAIKTGSFYGKAAQQANVPVPEGCTDRNATNF 421
Query: 361 DPTARSDDGSCQYTL 375
DPTARSDDGSC YTL
Sbjct: 422 DPTARSDDGSCLYTL 436
>gi|307136240|gb|ADN34076.1| ribulose bisphosphate carboxylase/oxygenase activase 1 [Cucumis
melo subsp. melo]
Length = 474
Score = 693 bits (1788), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 325/374 (86%), Positives = 346/374 (92%)
Query: 2 GTGTHYAVMSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLI 61
G GTH V+SSY+Y+S GLR YNLDN ++G YIAPAFMDKLVVHITKNFM LPNIKVPLI
Sbjct: 101 GAGTHDPVLSSYEYLSAGLRQYNLDNDVEGFYIAPAFMDKLVVHITKNFMKLPNIKVPLI 160
Query: 62 LGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKG 121
LGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKG
Sbjct: 161 LGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKG 220
Query: 122 KMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPI 181
KMC L INDLDAGAGR+GGTTQYTVNNQMVNATLMNIADNPT VQLPGMYNKEENPRVPI
Sbjct: 221 KMCALFINDLDAGAGRLGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRVPI 280
Query: 182 IVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQ 241
IVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVC GIFR+DN+ +DI+KLVDTFPGQ
Sbjct: 281 IVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCSGIFRSDNIPKEDIIKLVDTFPGQ 340
Query: 242 SIDFFGALRARVYDDEVRKWISGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMI 301
SIDFFGALRARVYDDEVRKW S VGV +I K LVNSKE PT EQP+MT+EKLLEYGNM+
Sbjct: 341 SIDFFGALRARVYDDEVRKWASSVGVENIAKKLVNSKEGPPTLEQPKMTLEKLLEYGNML 400
Query: 302 VQEQENVKRVQLADKYLSEAALGEANEDAIQSGNFYGKAAQQMNVPVPEGCTDPTAENFD 361
VQEQENVKRVQLADKYLSEAALG+ANEDAI+ G FYGKAAQQ+++P+PEGCTDP A+NFD
Sbjct: 401 VQEQENVKRVQLADKYLSEAALGDANEDAIKRGTFYGKAAQQVSLPIPEGCTDPNADNFD 460
Query: 362 PTARSDDGSCQYTL 375
PTARSDDGSC Y
Sbjct: 461 PTARSDDGSCNYVF 474
>gi|224109480|ref|XP_002315210.1| predicted protein [Populus trichocarpa]
gi|222864250|gb|EEF01381.1| predicted protein [Populus trichocarpa]
Length = 424
Score = 690 bits (1781), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 327/373 (87%), Positives = 350/373 (93%), Gaps = 1/373 (0%)
Query: 2 GTGTHYAVMSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLI 61
GTGTH V++SY+Y+SQGLRTYNLDN +DG YIAPAFMDKLVVHI+KNFMSLPNIKVPLI
Sbjct: 52 GTGTHNPVLNSYEYLSQGLRTYNLDNNMDGFYIAPAFMDKLVVHISKNFMSLPNIKVPLI 111
Query: 62 LGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKK- 120
LG+WGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKK
Sbjct: 112 LGVWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKK 171
Query: 121 GKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVP 180
GKMCCL INDLDAGAGR+GGTTQYTVNNQMVNATLMNIADNPT VQLPGMYNKEENPRVP
Sbjct: 172 GKMCCLFINDLDAGAGRLGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRVP 231
Query: 181 IIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPG 240
IIVTGNDFSTLYAPLIRDGRMEKFYWAPTR+DRIGVC GIF++D + +DIVKLVDTFPG
Sbjct: 232 IIVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRIGVCIGIFKSDKIPKEDIVKLVDTFPG 291
Query: 241 QSIDFFGALRARVYDDEVRKWISGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNM 300
QSIDFFGALRARVYDDEVRKW+SGVGV SIGK LVNS+E PTFEQP+MT+EKLLEYGNM
Sbjct: 292 QSIDFFGALRARVYDDEVRKWVSGVGVDSIGKKLVNSREGPPTFEQPKMTIEKLLEYGNM 351
Query: 301 IVQEQENVKRVQLADKYLSEAALGEANEDAIQSGNFYGKAAQQMNVPVPEGCTDPTAENF 360
+VQEQENVKRVQLADKYLSEA+LGEAN+D+I G FYG+AAQQ+ VPV EGCTDP A NF
Sbjct: 352 LVQEQENVKRVQLADKYLSEASLGEANQDSIDRGTFYGQAAQQVKVPVAEGCTDPNAANF 411
Query: 361 DPTARSDDGSCQY 373
DPTARSDDGSC Y
Sbjct: 412 DPTARSDDGSCTY 424
>gi|297827581|ref|XP_002881673.1| hypothetical protein ARALYDRAFT_482998 [Arabidopsis lyrata subsp.
lyrata]
gi|297327512|gb|EFH57932.1| hypothetical protein ARALYDRAFT_482998 [Arabidopsis lyrata subsp.
lyrata]
Length = 474
Score = 689 bits (1779), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 323/375 (86%), Positives = 344/375 (91%)
Query: 1 MGTGTHYAVMSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPL 60
MGTGTH+AV+SSY+YISQGLR YNLDN +DG YIAPAFMDKLVVHITKNF++LPNIKVPL
Sbjct: 100 MGTGTHHAVLSSYEYISQGLRQYNLDNMMDGFYIAPAFMDKLVVHITKNFLTLPNIKVPL 159
Query: 61 ILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKK 120
ILGIWGGKGQGKSFQCELV AKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAD+IKK
Sbjct: 160 ILGIWGGKGQGKSFQCELVMAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADMIKK 219
Query: 121 GKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVP 180
GKMCCL INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPT VQLPGMYNKEEN RVP
Sbjct: 220 GKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENARVP 279
Query: 181 IIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPG 240
IIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFR D + D+DIV LVD FPG
Sbjct: 280 IIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRTDKIKDEDIVTLVDQFPG 339
Query: 241 QSIDFFGALRARVYDDEVRKWISGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNM 300
QSIDFFGALRARVYDDEVRK++ G+GV IGK LVNS+E P FEQP MT+EKL+EYGNM
Sbjct: 340 QSIDFFGALRARVYDDEVRKFVEGLGVEKIGKRLVNSREGPPVFEQPEMTLEKLMEYGNM 399
Query: 301 IVQEQENVKRVQLADKYLSEAALGEANEDAIQSGNFYGKAAQQMNVPVPEGCTDPTAENF 360
+V EQENVKRVQLAD YLS+AALG+AN DAI G FYGK AQQ+N+PVPEGCTDP AENF
Sbjct: 400 LVMEQENVKRVQLADTYLSQAALGDANADAIDRGTFYGKGAQQVNLPVPEGCTDPVAENF 459
Query: 361 DPTARSDDGSCQYTL 375
DPTARSDDG+C Y
Sbjct: 460 DPTARSDDGTCVYNF 474
>gi|109940135|sp|P93431.2|RCA_ORYSJ RecName: Full=Ribulose bisphosphate carboxylase/oxygenase activase,
chloroplastic; Short=RA; Short=RuBisCO activase; Flags:
Precursor
gi|8918359|dbj|BAA97583.1| RuBisCO activase large isoform precursor [Oryza sativa (japonica
cultivar-group)]
gi|32352158|dbj|BAC78572.1| ribulose-bisphosphate carboxylase activase large isoform precursor
protein [Oryza sativa Japonica Group]
gi|77552725|gb|ABA95522.1| Ribulose bisphosphate carboxylase/oxygenase activase, chloroplast
precursor, putative, expressed [Oryza sativa Japonica
Group]
gi|125578108|gb|EAZ19330.1| hypothetical protein OsJ_34880 [Oryza sativa Japonica Group]
gi|218186228|gb|EEC68655.1| hypothetical protein OsI_37096 [Oryza sativa Indica Group]
Length = 466
Score = 683 bits (1763), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 320/375 (85%), Positives = 351/375 (93%), Gaps = 1/375 (0%)
Query: 2 GTGTHYAVMSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLI 61
G GTH AV+SSY+Y+SQGLRTY+ DNT+ G YIAPAFMDKLVVHI+KNFM+LPNIKVPLI
Sbjct: 92 GDGTHEAVLSSYEYLSQGLRTYDFDNTMGGFYIAPAFMDKLVVHISKNFMTLPNIKVPLI 151
Query: 62 LGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKG 121
LGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKG
Sbjct: 152 LGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKG 211
Query: 122 KMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPI 181
KMCCL INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPT VQLPGMYNKE+NPRVPI
Sbjct: 212 KMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEDNPRVPI 271
Query: 182 IVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQ 241
IVTGNDFSTLYAPLIRDGRMEKFYWAPTR+DR+GVCKGIFR DNV D+DIVK+VD+FPGQ
Sbjct: 272 IVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRVGVCKGIFRTDNVPDEDIVKIVDSFPGQ 331
Query: 242 SIDFFGALRARVYDDEVRKWISGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMI 301
SIDFFGALRARVYDDEVRKW+S GV +IGK LVNS+E P FEQP+MT+EKL+EYG M+
Sbjct: 332 SIDFFGALRARVYDDEVRKWVSDTGVENIGKRLVNSREGPPEFEQPKMTIEKLMEYGYML 391
Query: 302 VQEQENVKRVQLADKYLSEAALGEANEDAIQSGNFYGKAAQQM-NVPVPEGCTDPTAENF 360
V+EQENVKRVQLA++YLSEAALG+AN DA+++G+FYG+ AQQ N+PVPEGCTDP A+NF
Sbjct: 392 VKEQENVKRVQLAEQYLSEAALGDANSDAMKTGSFYGQGAQQAGNLPVPEGCTDPVAKNF 451
Query: 361 DPTARSDDGSCQYTL 375
DPTARSDDGSC YT
Sbjct: 452 DPTARSDDGSCLYTF 466
>gi|357155664|ref|XP_003577195.1| PREDICTED: ribulose bisphosphate carboxylase/oxygenase activase A,
chloroplastic-like [Brachypodium distachyon]
Length = 465
Score = 681 bits (1758), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 315/375 (84%), Positives = 349/375 (93%)
Query: 1 MGTGTHYAVMSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPL 60
MG GTH AV+SS +YISQGLR Y+ DNT+ G YIAPAFMDKLVVH++KNFM+LPNIKVPL
Sbjct: 91 MGDGTHVAVLSSQEYISQGLRKYDFDNTMGGFYIAPAFMDKLVVHLSKNFMTLPNIKVPL 150
Query: 61 ILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKK 120
ILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAD+IKK
Sbjct: 151 ILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADLIKK 210
Query: 121 GKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVP 180
GKMCCL INDLDAGAGRMGGTTQYTVNNQMVNATLMNIAD PT VQLPGMYNKEENPRVP
Sbjct: 211 GKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADAPTNVQLPGMYNKEENPRVP 270
Query: 181 IIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPG 240
IIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVC+GIF+ DN++D+ ++K+VDTFPG
Sbjct: 271 IIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCRGIFQTDNISDESVIKIVDTFPG 330
Query: 241 QSIDFFGALRARVYDDEVRKWISGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNM 300
QSIDFFGALRARVYDDEVRKW+S G+ +IGK LVNSK+ +FEQP+MT+EKLLEYG+M
Sbjct: 331 QSIDFFGALRARVYDDEVRKWVSSTGIENIGKKLVNSKDGPVSFEQPKMTIEKLLEYGHM 390
Query: 301 IVQEQENVKRVQLADKYLSEAALGEANEDAIQSGNFYGKAAQQMNVPVPEGCTDPTAENF 360
+VQEQ+NVKRVQLADKY+SEAALG+AN DA+++G+FYGK AQQ N+PVPEGCTD AEN+
Sbjct: 391 LVQEQDNVKRVQLADKYMSEAALGDANSDAMKTGSFYGKGAQQGNLPVPEGCTDRNAENY 450
Query: 361 DPTARSDDGSCQYTL 375
DPTARSDDGSC YT
Sbjct: 451 DPTARSDDGSCLYTF 465
>gi|18405145|ref|NP_565913.1| ribulose bisphosphate carboxylase/oxygenase activase [Arabidopsis
thaliana]
gi|12643259|sp|P10896.2|RCA_ARATH RecName: Full=Ribulose bisphosphate carboxylase/oxygenase activase,
chloroplastic; Short=RA; Short=RuBisCO activase; Flags:
Precursor
gi|11762250|gb|AAG40401.1|AF325049_1 At2g39730 [Arabidopsis thaliana]
gi|166834|gb|AAA20202.1| ribulose bisphosphate carboxylase/oxygenase activase [Arabidopsis
thaliana]
gi|2642155|gb|AAB87122.1| expressed protein [Arabidopsis thaliana]
gi|15810188|gb|AAL06995.1| At2g39730/T5I7.3_ [Arabidopsis thaliana]
gi|21594581|gb|AAM66023.1| unknown [Arabidopsis thaliana]
gi|330254620|gb|AEC09714.1| ribulose bisphosphate carboxylase/oxygenase activase [Arabidopsis
thaliana]
Length = 474
Score = 681 bits (1756), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 319/375 (85%), Positives = 341/375 (90%)
Query: 1 MGTGTHYAVMSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPL 60
MGTGTH+AV+SSY+Y+SQGLR YNLDN +DG YIAPAFMDKLVVHITKNF++LPNIKVPL
Sbjct: 100 MGTGTHHAVLSSYEYVSQGLRQYNLDNMMDGFYIAPAFMDKLVVHITKNFLTLPNIKVPL 159
Query: 61 ILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKK 120
ILGIWGGKGQGKSFQCELV AKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAD+IKK
Sbjct: 160 ILGIWGGKGQGKSFQCELVMAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADLIKK 219
Query: 121 GKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVP 180
GKMCCL INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPT VQLPGMYNKEEN RVP
Sbjct: 220 GKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENARVP 279
Query: 181 IIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPG 240
II TGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFR D + D+DIV LVD FPG
Sbjct: 280 IICTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRTDKIKDEDIVTLVDQFPG 339
Query: 241 QSIDFFGALRARVYDDEVRKWISGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNM 300
QSIDFFGALRARVYDDEVRK++ +GV IGK LVNS+E P FEQP MT EKL+EYGNM
Sbjct: 340 QSIDFFGALRARVYDDEVRKFVESLGVEKIGKRLVNSREGPPVFEQPEMTYEKLMEYGNM 399
Query: 301 IVQEQENVKRVQLADKYLSEAALGEANEDAIQSGNFYGKAAQQMNVPVPEGCTDPTAENF 360
+V EQENVKRVQLA+ YLS+AALG+AN DAI G FYGK AQQ+N+PVPEGCTDP AENF
Sbjct: 400 LVMEQENVKRVQLAETYLSQAALGDANADAIGRGTFYGKGAQQVNLPVPEGCTDPVAENF 459
Query: 361 DPTARSDDGSCQYTL 375
DPTARSDDG+C Y
Sbjct: 460 DPTARSDDGTCVYNF 474
>gi|23308421|gb|AAN18180.1| At2g39730/T5I7.3 [Arabidopsis thaliana]
Length = 474
Score = 679 bits (1751), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 318/375 (84%), Positives = 341/375 (90%)
Query: 1 MGTGTHYAVMSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPL 60
MGTGTH+AV+SSY+Y+SQGLR YNLDN +DG YIAPAFMDKLVVHITKNF++LPNIKVPL
Sbjct: 100 MGTGTHHAVLSSYEYVSQGLRQYNLDNMMDGFYIAPAFMDKLVVHITKNFLTLPNIKVPL 159
Query: 61 ILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKK 120
ILGIWGGKGQGKSFQCELV AKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAD+IKK
Sbjct: 160 ILGIWGGKGQGKSFQCELVMAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADLIKK 219
Query: 121 GKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVP 180
GKMCCL+INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPT VQLPGMYNKEEN RVP
Sbjct: 220 GKMCCLLINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENARVP 279
Query: 181 IIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPG 240
II TGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFR D + D+DIV LVD FP
Sbjct: 280 IICTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRTDKIKDEDIVTLVDQFPD 339
Query: 241 QSIDFFGALRARVYDDEVRKWISGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNM 300
QSIDFFGALRARVYDDEVRK++ +GV IGK LVNS+E P FEQP MT EKL+EYGNM
Sbjct: 340 QSIDFFGALRARVYDDEVRKFVESLGVEKIGKRLVNSREGPPVFEQPEMTYEKLMEYGNM 399
Query: 301 IVQEQENVKRVQLADKYLSEAALGEANEDAIQSGNFYGKAAQQMNVPVPEGCTDPTAENF 360
+V EQENVKRVQLA+ YLS+AALG+AN DAI G FYGK AQQ+N+PVPEGCTDP AENF
Sbjct: 400 LVMEQENVKRVQLAETYLSQAALGDANADAIGRGTFYGKGAQQVNLPVPEGCTDPVAENF 459
Query: 361 DPTARSDDGSCQYTL 375
DPTARSDDG+C Y
Sbjct: 460 DPTARSDDGTCVYNF 474
>gi|15450379|gb|AAK96483.1| At2g39730/T5I7.3 [Arabidopsis thaliana]
Length = 474
Score = 678 bits (1750), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 318/375 (84%), Positives = 340/375 (90%)
Query: 1 MGTGTHYAVMSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPL 60
MGTGTH+AV+SSY+Y+SQGLR YNLDN +DG YIAPAFMDKLVVHITKNF++LPNIKVPL
Sbjct: 100 MGTGTHHAVLSSYEYVSQGLRQYNLDNMMDGFYIAPAFMDKLVVHITKNFLTLPNIKVPL 159
Query: 61 ILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKK 120
ILGIWGGKGQGKSFQCELV AKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAD+IKK
Sbjct: 160 ILGIWGGKGQGKSFQCELVMAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADLIKK 219
Query: 121 GKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVP 180
GKMCCL INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPT VQLPGMYNKEEN RVP
Sbjct: 220 GKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENARVP 279
Query: 181 IIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPG 240
II TGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFR D + D+DIV LVD FP
Sbjct: 280 IICTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRTDKIKDEDIVTLVDQFPD 339
Query: 241 QSIDFFGALRARVYDDEVRKWISGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNM 300
QSIDFFGALRARVYDDEVRK++ +GV IGK LVNS+E P FEQP MT EKL+EYGNM
Sbjct: 340 QSIDFFGALRARVYDDEVRKFVESLGVEKIGKRLVNSREGPPVFEQPEMTYEKLMEYGNM 399
Query: 301 IVQEQENVKRVQLADKYLSEAALGEANEDAIQSGNFYGKAAQQMNVPVPEGCTDPTAENF 360
+V EQENVKRVQLA+ YLS+AALG+AN DAI G FYGK AQQ+N+PVPEGCTDP AENF
Sbjct: 400 LVMEQENVKRVQLAETYLSQAALGDANADAIGRGTFYGKGAQQVNLPVPEGCTDPVAENF 459
Query: 361 DPTARSDDGSCQYTL 375
DPTARSDDG+C Y
Sbjct: 460 DPTARSDDGTCVYNF 474
>gi|407911668|gb|AFU50382.1| chloroplast ribulose bisphosphate carboxylase/oxygenase activase
large isoform a [Ipomoea batatas]
Length = 484
Score = 671 bits (1732), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 311/375 (82%), Positives = 345/375 (92%)
Query: 1 MGTGTHYAVMSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPL 60
MGTGTH+AV+SSY+YISQGLR YN+DNT+DG YIAPAFMDKLVVHITKNF+ LPNIK+PL
Sbjct: 110 MGTGTHHAVLSSYEYISQGLREYNIDNTLDGFYIAPAFMDKLVVHITKNFLKLPNIKIPL 169
Query: 61 ILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKK 120
ILG+WGGKGQGKSFQCELVF KMGINPIMMSAGELESGNAGEPAKLIRQRYREAA+II+K
Sbjct: 170 ILGVWGGKGQGKSFQCELVFRKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRK 229
Query: 121 GKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVP 180
G MC L INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPT VQLPGMYNK+EN RVP
Sbjct: 230 GNMCVLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVP 289
Query: 181 IIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPG 240
IIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFR D V D+ +VKLVDTFPG
Sbjct: 290 IIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRTDGVPDEHVVKLVDTFPG 349
Query: 241 QSIDFFGALRARVYDDEVRKWISGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNM 300
QSIDFFGALRARVYDDEVRK+I+ +GV ++ + L+NS++ P F+QP+MT+EKLL+YG M
Sbjct: 350 QSIDFFGALRARVYDDEVRKFIASIGVDAVNERLLNSRDGPPKFDQPKMTIEKLLQYGYM 409
Query: 301 IVQEQENVKRVQLADKYLSEAALGEANEDAIQSGNFYGKAAQQMNVPVPEGCTDPTAENF 360
+VQEQENVKRVQLADKYL EAALG+ANEDAI++GNFYG+ AQ N+ VPEGCTDP A NF
Sbjct: 410 LVQEQENVKRVQLADKYLKEAALGDANEDAIKNGNFYGQGAQSGNLKVPEGCTDPQASNF 469
Query: 361 DPTARSDDGSCQYTL 375
DPTARSDDG+C Y +
Sbjct: 470 DPTARSDDGTCTYQV 484
>gi|32481061|gb|AAP83927.1| Rubisco activase alpha form precursor [Deschampsia antarctica]
Length = 465
Score = 671 bits (1730), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 311/375 (82%), Positives = 347/375 (92%)
Query: 1 MGTGTHYAVMSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPL 60
MG GTH AV+SSY+Y+SQGL+ Y+ DNT+ G YIAPAFMDKLVVH++KNFM+LPNIK+PL
Sbjct: 91 MGDGTHEAVLSSYEYVSQGLKKYDFDNTMGGFYIAPAFMDKLVVHLSKNFMTLPNIKIPL 150
Query: 61 ILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKK 120
ILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAD+IKK
Sbjct: 151 ILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADMIKK 210
Query: 121 GKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVP 180
GKMCCL INDLDAGAGRMGGTTQYTVNNQMVNATLMNIAD PT VQLPGMYNKEENPRVP
Sbjct: 211 GKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADAPTNVQLPGMYNKEENPRVP 270
Query: 181 IIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPG 240
I VTGNDFSTLYAPLI DGRMEKFYWAPTREDRIGVCKGIF+ DNV+D+ +VK+VDTFPG
Sbjct: 271 IXVTGNDFSTLYAPLIPDGRMEKFYWAPTREDRIGVCKGIFQTDNVSDESVVKIVDTFPG 330
Query: 241 QSIDFFGALRARVYDDEVRKWISGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNM 300
QSIDFFGALRARVYDDEVRKW+S G+ +IGK LVNS++ TFEQP+MT+EKLLEYG+M
Sbjct: 331 QSIDFFGALRARVYDDEVRKWVSSTGIENIGKRLVNSRDGPVTFEQPKMTVEKLLEYGHM 390
Query: 301 IVQEQENVKRVQLADKYLSEAALGEANEDAIQSGNFYGKAAQQMNVPVPEGCTDPTAENF 360
+VQEQ+NVKRVQLAD Y+S+AALG+AN+DA+++G+FYGK AQQ +PVPEGCTD A+NF
Sbjct: 391 LVQEQDNVKRVQLADTYMSQAALGDANKDAMKTGSFYGKGAQQGTLPVPEGCTDRDAKNF 450
Query: 361 DPTARSDDGSCQYTL 375
DPTARSDDGSC YT
Sbjct: 451 DPTARSDDGSCLYTF 465
>gi|407911670|gb|AFU50383.1| chloroplast ribulose bisphosphate carboxylase/oxygenase activase
large isoform b [Ipomoea batatas]
Length = 484
Score = 671 bits (1730), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 311/375 (82%), Positives = 345/375 (92%)
Query: 1 MGTGTHYAVMSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPL 60
MGTGTH+AV+SSY+YISQGLR YN+DNT+DG YIAPAFMDKLVVHITKNF+ LPNIK+PL
Sbjct: 110 MGTGTHHAVLSSYEYISQGLREYNIDNTLDGFYIAPAFMDKLVVHITKNFLKLPNIKIPL 169
Query: 61 ILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKK 120
ILG+WGGKGQGKSFQCELVF KMGINPIMMSAGELESGNAGEPAKLIRQRYREAA+II+K
Sbjct: 170 ILGVWGGKGQGKSFQCELVFRKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRK 229
Query: 121 GKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVP 180
G MC L INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPT VQLPGMYNK+EN RVP
Sbjct: 230 GNMCVLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVP 289
Query: 181 IIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPG 240
IIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFR D V D+ +VKLVDTFPG
Sbjct: 290 IIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRTDGVPDEHVVKLVDTFPG 349
Query: 241 QSIDFFGALRARVYDDEVRKWISGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNM 300
QSIDFFGALRARVYDDEVRK+I+ +GV ++ + L+NS++ P F+QP+MT+EKLL+YG M
Sbjct: 350 QSIDFFGALRARVYDDEVRKFIASIGVDAVNERLLNSRDGPPKFDQPKMTIEKLLQYGYM 409
Query: 301 IVQEQENVKRVQLADKYLSEAALGEANEDAIQSGNFYGKAAQQMNVPVPEGCTDPTAENF 360
+VQEQENVKRVQLADKYL EAALG+ANEDAI++GNFYG+ AQ N+ VPEGCTDP A NF
Sbjct: 410 LVQEQENVKRVQLADKYLKEAALGDANEDAIKNGNFYGQGAQSGNLKVPEGCTDPQASNF 469
Query: 361 DPTARSDDGSCQYTL 375
DPTARSDDG+C Y +
Sbjct: 470 DPTARSDDGTCTYQV 484
>gi|12643756|sp|Q40073.1|RCAA_HORVU RecName: Full=Ribulose bisphosphate carboxylase/oxygenase activase
A, chloroplastic; Short=RA A; Short=RuBisCO activase A;
Flags: Precursor
gi|167097|gb|AAA63164.1| ribulose 1,5-bisphosphate carboxylase activase isoform 2 [Hordeum
vulgare subsp. vulgare]
Length = 464
Score = 670 bits (1729), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 308/374 (82%), Positives = 346/374 (92%)
Query: 2 GTGTHYAVMSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLI 61
G GTH AV+SSY+Y+SQGLR Y+ DNT+ G YIAPAFMDKLVVH++KNFM+LPNIK+PLI
Sbjct: 91 GHGTHEAVLSSYEYVSQGLRKYDFDNTMGGFYIAPAFMDKLVVHLSKNFMTLPNIKIPLI 150
Query: 62 LGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKG 121
LGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAD+IKKG
Sbjct: 151 LGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADMIKKG 210
Query: 122 KMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPI 181
KMCCL INDLDAGAGRMGGTTQYTVNNQMVNATLMNIAD PT VQLPGMYNK ENPRVPI
Sbjct: 211 KMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADAPTNVQLPGMYNKRENPRVPI 270
Query: 182 IVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQ 241
+VTGNDFSTLYAPLIRDGRMEKFYWAPTR+DRIGVCKGIF+ DNV+D+ +VK+VDTFPGQ
Sbjct: 271 VVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRIGVCKGIFQTDNVSDESVVKIVDTFPGQ 330
Query: 242 SIDFFGALRARVYDDEVRKWISGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMI 301
SIDFFGALRARVYDDEVRKW+ G+ +IGK LVNS++ TFEQP+MT+EKLLEYG+M+
Sbjct: 331 SIDFFGALRARVYDDEVRKWVGSTGIENIGKRLVNSRDGPVTFEQPKMTVEKLLEYGHML 390
Query: 302 VQEQENVKRVQLADKYLSEAALGEANEDAIQSGNFYGKAAQQMNVPVPEGCTDPTAENFD 361
VQEQ+NVKRVQLAD Y+S+AALG+AN+DA+++G+FYGK AQQ +PVPEGCTD A+N+D
Sbjct: 391 VQEQDNVKRVQLADTYMSQAALGDANQDAMKTGSFYGKGAQQGTLPVPEGCTDQNAKNYD 450
Query: 362 PTARSDDGSCQYTL 375
PTARSDDGSC YT
Sbjct: 451 PTARSDDGSCLYTF 464
>gi|116787538|gb|ABK24548.1| unknown [Picea sitchensis]
Length = 480
Score = 670 bits (1729), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 307/375 (81%), Positives = 347/375 (92%)
Query: 1 MGTGTHYAVMSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPL 60
MG+GTH VMS+YDYIS RTY+ DNT+DG YIAP+FMDKL+VHI+KNFM+LPNIKVPL
Sbjct: 103 MGSGTHNVVMSTYDYISTAQRTYDFDNTMDGYYIAPSFMDKLLVHISKNFMNLPNIKVPL 162
Query: 61 ILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKK 120
ILGIWGGKGQGKSFQCELVFAK+GINPIMMSAGELESG+AGEPAKL+R+RYREA+DI+KK
Sbjct: 163 ILGIWGGKGQGKSFQCELVFAKLGINPIMMSAGELESGDAGEPAKLLRKRYREASDIVKK 222
Query: 121 GKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVP 180
GKMC L INDLDAGAGRMG TTQYTVNNQMVNATLMNIADNPT VQLPGMYNK++NPRVP
Sbjct: 223 GKMCVLFINDLDAGAGRMGSTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQDNPRVP 282
Query: 181 IIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPG 240
I+VTGNDFSTLYAPLIRDGRMEKFYWAPTR+DRIGVC+GIFR DNV DD+V+LVDTFPG
Sbjct: 283 IVVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRIGVCQGIFRADNVHPDDVVRLVDTFPG 342
Query: 241 QSIDFFGALRARVYDDEVRKWISGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNM 300
QSIDFFGALRARVYDDEVRKW++G G+ +IGK L+NSKE PTFE+P MT+EKLLEYGNM
Sbjct: 343 QSIDFFGALRARVYDDEVRKWVAGTGIQNIGKKLINSKEGPPTFEKPAMTIEKLLEYGNM 402
Query: 301 IVQEQENVKRVQLADKYLSEAALGEANEDAIQSGNFYGKAAQQMNVPVPEGCTDPTAENF 360
+V EQ+NVKRVQLADKY+SEAALG+ANED+I+ G FYG+AAQ +N+PVPEGCTDP A N+
Sbjct: 403 LVGEQDNVKRVQLADKYMSEAALGDANEDSIKRGTFYGQAAQHVNLPVPEGCTDPRAANY 462
Query: 361 DPTARSDDGSCQYTL 375
DPTARSD+GSC+Y
Sbjct: 463 DPTARSDNGSCEYEF 477
>gi|407911664|gb|AFU50380.1| chloroplast ribulose bisphosphate carboxylase/oxygenase activase
large isoform [Ipomoea batatas]
gi|407911672|gb|AFU50384.1| chloroplast ribulose bisphosphate carboxylase/oxygenase activase
large isoform c [Ipomoea batatas]
Length = 484
Score = 670 bits (1728), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 311/375 (82%), Positives = 345/375 (92%)
Query: 1 MGTGTHYAVMSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPL 60
MGTGTH+AV+SSY+YISQGLR YN+DNT+DG YIAPAFMDKLVVHITKNF+ LPNIK+PL
Sbjct: 110 MGTGTHHAVLSSYEYISQGLREYNIDNTLDGFYIAPAFMDKLVVHITKNFLKLPNIKIPL 169
Query: 61 ILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKK 120
ILG+WGGKGQGKSFQCELVF KMGINPIMMSAGELESGNAGEPAKLIRQRYREAA+II+K
Sbjct: 170 ILGVWGGKGQGKSFQCELVFRKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRK 229
Query: 121 GKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVP 180
G MC L INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPT VQLPGMYNK+EN RVP
Sbjct: 230 GNMCVLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVP 289
Query: 181 IIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPG 240
IIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFR D V D+ +VKLVDTFPG
Sbjct: 290 IIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRTDGVPDEHVVKLVDTFPG 349
Query: 241 QSIDFFGALRARVYDDEVRKWISGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNM 300
QSIDFFGALRARVYDDEVRK+I+ +GV ++ + L+NS++ P F+QP+MT+EKLL+YG M
Sbjct: 350 QSIDFFGALRARVYDDEVRKFIASIGVDAVNERLLNSRDGPPKFDQPKMTIEKLLQYGYM 409
Query: 301 IVQEQENVKRVQLADKYLSEAALGEANEDAIQSGNFYGKAAQQMNVPVPEGCTDPTAENF 360
+VQEQENVKRVQLADKYL EAALG+ANEDAI++GNFYG+ AQ N+ VPEGCTDP A NF
Sbjct: 410 LVQEQENVKRVQLADKYLKEAALGDANEDAIKNGNFYGQGAQSGNLKVPEGCTDPQASNF 469
Query: 361 DPTARSDDGSCQYTL 375
DPTARSDDG+C Y +
Sbjct: 470 DPTARSDDGTCTYQV 484
>gi|100614|pir||B23703 ribulose-bisphosphate carboxylase activase (EC 6.3.4.-) A long form
precursor - barley (fragment)
gi|167089|gb|AAA62701.1| ribulose 1,5-bisphosphate carboxylase activase, partial [Hordeum
vulgare subsp. vulgare]
Length = 426
Score = 666 bits (1719), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 308/374 (82%), Positives = 345/374 (92%)
Query: 2 GTGTHYAVMSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLI 61
G GTH AV+SSY+Y+SQGLR Y+ DNT+ G YIAPAFMDKLVVH++KNFM+LPNIK+PLI
Sbjct: 53 GDGTHEAVLSSYEYVSQGLRKYDFDNTMGGFYIAPAFMDKLVVHLSKNFMTLPNIKIPLI 112
Query: 62 LGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKG 121
LGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAD+IKKG
Sbjct: 113 LGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADMIKKG 172
Query: 122 KMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPI 181
KMCCL INDLDAGAGRMGGTTQYTVNNQMVNATLMNIAD PT VQLPGMYNK ENPRVPI
Sbjct: 173 KMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADAPTNVQLPGMYNKRENPRVPI 232
Query: 182 IVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQ 241
+VTGNDFSTLYAPLIRDGRMEKFYWAPTR+DRIGVCKGIF+ DNV D+ +VK+VDTFPGQ
Sbjct: 233 VVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRIGVCKGIFQTDNVCDESVVKIVDTFPGQ 292
Query: 242 SIDFFGALRARVYDDEVRKWISGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMI 301
SIDFFGALRARVYDDEVRKW+ G+ +IGK LVNS++ TFEQP+MT+EKLLEYG+M+
Sbjct: 293 SIDFFGALRARVYDDEVRKWVGSTGIENIGKRLVNSRDGPVTFEQPKMTVEKLLEYGHML 352
Query: 302 VQEQENVKRVQLADKYLSEAALGEANEDAIQSGNFYGKAAQQMNVPVPEGCTDPTAENFD 361
VQEQ+NVKRVQLAD Y+S+AALG+AN+DA+++G+FYGK AQQ +PVPEGCTD A+N+D
Sbjct: 353 VQEQDNVKRVQLADTYMSQAALGDANQDAMKTGSFYGKGAQQGTLPVPEGCTDQNAKNYD 412
Query: 362 PTARSDDGSCQYTL 375
PTARSDDGSC YT
Sbjct: 413 PTARSDDGSCLYTF 426
>gi|293331415|ref|NP_001168488.1| uncharacterized protein LOC100382265 [Zea mays]
gi|223948617|gb|ACN28392.1| unknown [Zea mays]
gi|413920135|gb|AFW60067.1| hypothetical protein ZEAMMB73_533261 [Zea mays]
Length = 463
Score = 666 bits (1718), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 315/373 (84%), Positives = 340/373 (91%), Gaps = 4/373 (1%)
Query: 1 MGTGTHYAVMSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPL 60
MG GTH AV+SSYDYISQGLR Y+LDN +DG YIAPAFMDKLVVHI KNFM LPNIKVPL
Sbjct: 94 MGDGTHVAVLSSYDYISQGLRHYSLDNMMDGYYIAPAFMDKLVVHIAKNFMPLPNIKVPL 153
Query: 61 ILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKK 120
ILGIWGGKGQGKSFQCELV AKMGINPI+MSAGELESGNAGEPAKLIRQRYREAAD+IKK
Sbjct: 154 ILGIWGGKGQGKSFQCELVLAKMGINPIVMSAGELESGNAGEPAKLIRQRYREAADMIKK 213
Query: 121 GKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVP 180
GKMC L INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPT VQLPGMYNKEENPRVP
Sbjct: 214 GKMCVLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRVP 273
Query: 181 IIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPG 240
IIVTGNDFSTLYAPLIRDGRM+KFYWAPTREDR+GVCKGIFR+D V D+D+V+LVD FPG
Sbjct: 274 IIVTGNDFSTLYAPLIRDGRMDKFYWAPTREDRVGVCKGIFRSDGVPDEDVVRLVDAFPG 333
Query: 241 QSIDFFGALRARVYDDEVRKWISGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNM 300
QSIDFFGALRARVYDDEVR+W++ GV +I + LVNSKE PTFEQPRMT++KL+EYG M
Sbjct: 334 QSIDFFGALRARVYDDEVRRWVAETGVENIARRLVNSKEGPPTFEQPRMTLDKLMEYGRM 393
Query: 301 IVQEQENVKRVQLADKYLSEAALGEANEDAIQSGNFYGKAAQQMNVPVPEGCTDPTAENF 360
+V+EQENVKRVQLADKYLSEAALG+AN+D + YGKAAQ + VPVPEGCTDP A NF
Sbjct: 394 LVEEQENVKRVQLADKYLSEAALGDANDD----DDLYGKAAQHVRVPVPEGCTDPKAGNF 449
Query: 361 DPTARSDDGSCQY 373
DPTARSDDGSC Y
Sbjct: 450 DPTARSDDGSCVY 462
>gi|427542680|gb|AFY63117.1| alpha-form Rubisco activase [Zea mays]
Length = 463
Score = 662 bits (1708), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 314/373 (84%), Positives = 339/373 (90%), Gaps = 4/373 (1%)
Query: 1 MGTGTHYAVMSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPL 60
MG GTH AV+SSYDYISQGLR Y+LDN +DG YIAPAFMDKLVVHI KNFM LPNIKVPL
Sbjct: 94 MGDGTHVAVLSSYDYISQGLRHYSLDNMMDGYYIAPAFMDKLVVHIAKNFMPLPNIKVPL 153
Query: 61 ILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKK 120
ILGIWGGKGQGKSFQCELV AKMGINPI+MSAGELESGNAGEPAKLIRQRYREAAD+IKK
Sbjct: 154 ILGIWGGKGQGKSFQCELVLAKMGINPIVMSAGELESGNAGEPAKLIRQRYREAADMIKK 213
Query: 121 GKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVP 180
GKMC L INDL AGAGRMGGTTQYTVNNQMVNATLMNIADNPT VQLPGMYNKEENPRVP
Sbjct: 214 GKMCVLFINDLYAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRVP 273
Query: 181 IIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPG 240
IIVTGNDFSTLYAPLIRDGRM+KFYWAPTREDR+GVCKGIFR+D V D+D+V+LVD FPG
Sbjct: 274 IIVTGNDFSTLYAPLIRDGRMDKFYWAPTREDRVGVCKGIFRSDGVPDEDVVRLVDAFPG 333
Query: 241 QSIDFFGALRARVYDDEVRKWISGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNM 300
QSIDFFGALRARVYDDEVR+W++ GV +I + LVNSKE PTFEQPRMT++KL+EYG M
Sbjct: 334 QSIDFFGALRARVYDDEVRRWVAETGVENIARRLVNSKEGPPTFEQPRMTLDKLMEYGRM 393
Query: 301 IVQEQENVKRVQLADKYLSEAALGEANEDAIQSGNFYGKAAQQMNVPVPEGCTDPTAENF 360
+V+EQENVKRVQLADKYLSEAALG+AN+D + YGKAAQ + VPVPEGCTDP A NF
Sbjct: 394 LVEEQENVKRVQLADKYLSEAALGDANDD----DDLYGKAAQHVRVPVPEGCTDPKAGNF 449
Query: 361 DPTARSDDGSCQY 373
DPTARSDDGSC Y
Sbjct: 450 DPTARSDDGSCVY 462
>gi|410927436|gb|AFV93497.1| chloroplast ribulose bisphosphate carboxylase/oxygenase activase
alpha1, partial [Gossypium barbadense]
Length = 371
Score = 654 bits (1686), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 312/344 (90%), Positives = 325/344 (94%)
Query: 1 MGTGTHYAVMSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPL 60
M GTHYAVMSSY+YISQGL+TYNLDN +DG YIAPAFMDKLVVHI+KNFMSLPNIKVPL
Sbjct: 28 MNDGTHYAVMSSYEYISQGLKTYNLDNNMDGFYIAPAFMDKLVVHISKNFMSLPNIKVPL 87
Query: 61 ILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKK 120
ILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKK
Sbjct: 88 ILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKK 147
Query: 121 GKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVP 180
GKMC L INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPT VQLPGMYNKEENPRVP
Sbjct: 148 GKMCALFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRVP 207
Query: 181 IIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPG 240
IIVTGNDFSTLYAPLIRDGRMEKFYWAPTR+DRIGVCKGIFR D V D+DIVKLVDTFPG
Sbjct: 208 IIVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRIGVCKGIFRTDGVRDEDIVKLVDTFPG 267
Query: 241 QSIDFFGALRARVYDDEVRKWISGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNM 300
QSIDFFGALRARVYDDEVRKWIS VGV S+GK LVNS+E PTFEQP+MT+EKLLEYGNM
Sbjct: 268 QSIDFFGALRARVYDDEVRKWISEVGVASVGKKLVNSREGPPTFEQPKMTIEKLLEYGNM 327
Query: 301 IVQEQENVKRVQLADKYLSEAALGEANEDAIQSGNFYGKAAQQM 344
+V EQENVKRVQLADKYLSEAALGEANED+I G FYGKAAQQ+
Sbjct: 328 LVAEQENVKRVQLADKYLSEAALGEANEDSINRGTFYGKAAQQV 371
>gi|167999775|ref|XP_001752592.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162696123|gb|EDQ82463.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 477
Score = 652 bits (1682), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 309/373 (82%), Positives = 338/373 (90%), Gaps = 1/373 (0%)
Query: 2 GTGTHYAVMSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLI 61
G GT AV+SS+DYISQG RTY++DN DGLYIAPAFMDKLV+HI KNFM LP IKVPLI
Sbjct: 100 GMGTQNAVLSSWDYISQGQRTYSMDNIKDGLYIAPAFMDKLVIHIAKNFMDLPGIKVPLI 159
Query: 62 LGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKG 121
LGIWGGKGQGKSFQCELV +K+GINPI+MSAGELESGNAGEPAKLIRQRYREAADIIKKG
Sbjct: 160 LGIWGGKGQGKSFQCELVMSKLGINPIVMSAGELESGNAGEPAKLIRQRYREAADIIKKG 219
Query: 122 KMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPI 181
KMC L INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPT VQLPG+YNKE PRVPI
Sbjct: 220 KMCALFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGVYNKETIPRVPI 279
Query: 182 IVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQ 241
IVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFR DNV DDD+VKLVD FPGQ
Sbjct: 280 IVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRLDNVHDDDVVKLVDKFPGQ 339
Query: 242 SIDFFGALRARVYDDEVRKWISGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMI 301
SIDFFGALRARVYDDEVRKWI VG+ +IG++LVNSK+ PTF++P MT+EKL+EYG+M+
Sbjct: 340 SIDFFGALRARVYDDEVRKWIGKVGIENIGRNLVNSKDGPPTFQKPAMTIEKLMEYGDML 399
Query: 302 VQEQENVKRVQLADKYLSEAALGEANEDAIQSGNFY-GKAAQQMNVPVPEGCTDPTAENF 360
VQEQ+NVKRVQLA++YLS ALG+AN DAI+ G FY G AAQ M++ VPEGCTDP AENF
Sbjct: 400 VQEQQNVKRVQLAEEYLSSDALGDANADAIKQGTFYGGNAAQHMDLKVPEGCTDPNAENF 459
Query: 361 DPTARSDDGSCQY 373
DPTARSDDG+C Y
Sbjct: 460 DPTARSDDGTCVY 472
>gi|410927466|gb|AFV93498.1| chloroplast ribulose bisphosphate carboxylase/oxygenase activase
alpha 2, partial [Gossypium barbadense]
Length = 371
Score = 649 bits (1673), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 308/344 (89%), Positives = 324/344 (94%)
Query: 1 MGTGTHYAVMSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPL 60
M GTHYAVMSSY+Y+SQGL+TYNLDN +DG YIAPAFMDKLVVHITKNFMSLPNIKVPL
Sbjct: 28 MNDGTHYAVMSSYEYLSQGLKTYNLDNNMDGFYIAPAFMDKLVVHITKNFMSLPNIKVPL 87
Query: 61 ILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKK 120
ILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKK
Sbjct: 88 ILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKK 147
Query: 121 GKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVP 180
GKMC L INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPT VQLPGMYNKEENPRVP
Sbjct: 148 GKMCALFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRVP 207
Query: 181 IIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPG 240
IIVTGNDFSTLYAPLIRDGRMEKFYWAPTR+DR+GVCKGIFR D + D+DIVKLVDTFPG
Sbjct: 208 IIVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRVGVCKGIFRTDGIPDEDIVKLVDTFPG 267
Query: 241 QSIDFFGALRARVYDDEVRKWISGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNM 300
QSIDFFGALRARVYDDEVRKWIS VGV +GK LVNS++ PTFEQP+MT+EKLLEYGNM
Sbjct: 268 QSIDFFGALRARVYDDEVRKWISDVGVAGVGKKLVNSRDGPPTFEQPKMTIEKLLEYGNM 327
Query: 301 IVQEQENVKRVQLADKYLSEAALGEANEDAIQSGNFYGKAAQQM 344
+V EQENVKRVQLADKYLSEAALGEANED+I G FYGKAAQQ+
Sbjct: 328 LVAEQENVKRVQLADKYLSEAALGEANEDSINRGTFYGKAAQQV 371
>gi|115334975|gb|ABI94075.1| chloroplast ribulose-1,5-bisphosphate carboxylase/oxygenase
activase small protein isoform [Acer rubrum]
Length = 437
Score = 648 bits (1672), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 307/337 (91%), Positives = 325/337 (96%), Gaps = 1/337 (0%)
Query: 2 GTGTHYAVMSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLI 61
GTGTHYAVMSSYDYIS GLRTY L+N++DG YIAPAFMDKLVVHITKNFMSLPNIK+PLI
Sbjct: 102 GTGTHYAVMSSYDYISTGLRTY-LENSMDGFYIAPAFMDKLVVHITKNFMSLPNIKIPLI 160
Query: 62 LGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKG 121
LGIWGGKGQGKSFQCELVFAKMGI PIMMSAGELESGNAGEPAKLIRQRYREAADIIKKG
Sbjct: 161 LGIWGGKGQGKSFQCELVFAKMGITPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKG 220
Query: 122 KMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPI 181
KMCCL INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPT VQLPGMYNKEENPRVPI
Sbjct: 221 KMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTSVQLPGMYNKEENPRVPI 280
Query: 182 IVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQ 241
IVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFR+DNVAD +++KLVDTFPGQ
Sbjct: 281 IVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRSDNVADGELIKLVDTFPGQ 340
Query: 242 SIDFFGALRARVYDDEVRKWISGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMI 301
SIDFFGALRARVYDDEVRKWISG+GV SIGK+LVNSK PTFEQP+MT++KLLEYGNM+
Sbjct: 341 SIDFFGALRARVYDDEVRKWISGIGVDSIGKNLVNSKNGPPTFEQPKMTIDKLLEYGNML 400
Query: 302 VQEQENVKRVQLADKYLSEAALGEANEDAIQSGNFYG 338
VQEQENVKRVQLADKYLSEAALG+AN+DAI+ G+FYG
Sbjct: 401 VQEQENVKRVQLADKYLSEAALGDANDDAIKRGSFYG 437
>gi|170129|gb|AAA34038.1| rubisco activase precursor [Spinacia oleracea]
Length = 472
Score = 646 bits (1666), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 297/372 (79%), Positives = 336/372 (90%)
Query: 4 GTHYAVMSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILG 63
GTH + SS++Y SQGLR Y++DN + LYIAPAFMDKLVVHITKNF++LPNIK+PLILG
Sbjct: 101 GTHVPIQSSFEYESQGLRKYDIDNMLGDLYIAPAFMDKLVVHITKNFLNLPNIKIPLILG 160
Query: 64 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 123
+WGGKGQGKSFQCELVFAK+GINPIMMSAGELESGNAGEPAKLIRQRYREAAD+I KGKM
Sbjct: 161 VWGGKGQGKSFQCELVFAKLGINPIMMSAGELESGNAGEPAKLIRQRYREAADLIAKGKM 220
Query: 124 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 183
C L INDL+ GAGRMGGTTQYTVNNQMVNATL+NIADNPT VQLPGMYNK++N RVPIIV
Sbjct: 221 CALFINDLEPGAGRMGGTTQYTVNNQMVNATLLNIADNPTNVQLPGMYNKQDNARVPIIV 280
Query: 184 TGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSI 243
TGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVC GIF+ D V + +VKLVD FPGQSI
Sbjct: 281 TGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCTGIFKTDKVPAEHVVKLVDAFPGQSI 340
Query: 244 DFFGALRARVYDDEVRKWISGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQ 303
DFFGALRARVYDDEVRKW++ VGV ++GK LVNSK+ P FEQP MT++KL+EYGNM+VQ
Sbjct: 341 DFFGALRARVYDDEVRKWVNSVGVDNVGKKLVNSKDGPPVFEQPEMTLQKLMEYGNMLVQ 400
Query: 304 EQENVKRVQLADKYLSEAALGEANEDAIQSGNFYGKAAQQMNVPVPEGCTDPTAENFDPT 363
EQENVKRVQLAD+Y+S AALG+AN+DAI G F+GKAAQQ+++PV +GCTDP A+N+DPT
Sbjct: 401 EQENVKRVQLADQYMSSAALGDANKDAIDRGTFFGKAAQQVSLPVAQGCTDPEAKNYDPT 460
Query: 364 ARSDDGSCQYTL 375
ARSDDGSC Y L
Sbjct: 461 ARSDDGSCTYNL 472
>gi|115334979|gb|ABI94077.1| chloroplast ribulose-1,5-bisphosphate carboxylase/oxygenase
activase small protein isoform [Acer rubrum]
Length = 437
Score = 645 bits (1663), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 305/337 (90%), Positives = 324/337 (96%), Gaps = 1/337 (0%)
Query: 2 GTGTHYAVMSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLI 61
GTGTHYAVMSSYDYIS GLRTY L+N++DG YIAP FM KLVVHITKNFMSLPNIK+PLI
Sbjct: 102 GTGTHYAVMSSYDYISTGLRTY-LENSMDGFYIAPVFMGKLVVHITKNFMSLPNIKIPLI 160
Query: 62 LGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKG 121
LGIWGGKGQGKSFQCELVFAKMGI PIMMSAGELESGNAGEPAKLIRQRYREAADIIKKG
Sbjct: 161 LGIWGGKGQGKSFQCELVFAKMGITPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKG 220
Query: 122 KMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPI 181
KMCCL INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPT VQLPGMYNKEENPRVPI
Sbjct: 221 KMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTSVQLPGMYNKEENPRVPI 280
Query: 182 IVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQ 241
IVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFR+DNVAD++++KLVDTFPGQ
Sbjct: 281 IVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRSDNVADNELIKLVDTFPGQ 340
Query: 242 SIDFFGALRARVYDDEVRKWISGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMI 301
SIDFFGALRARVYDDEVRKWISG+GV SIGK+LVNSK PTFEQP+MT++KLLEYGNM+
Sbjct: 341 SIDFFGALRARVYDDEVRKWISGIGVDSIGKNLVNSKNGPPTFEQPKMTIDKLLEYGNML 400
Query: 302 VQEQENVKRVQLADKYLSEAALGEANEDAIQSGNFYG 338
VQEQENVKRVQLADKYLSEAALG+AN+DAI+ G+FYG
Sbjct: 401 VQEQENVKRVQLADKYLSEAALGDANDDAIKRGSFYG 437
>gi|302780018|ref|XP_002971784.1| hypothetical protein SELMODRAFT_95817 [Selaginella moellendorffii]
gi|300160916|gb|EFJ27533.1| hypothetical protein SELMODRAFT_95817 [Selaginella moellendorffii]
Length = 451
Score = 644 bits (1662), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 306/373 (82%), Positives = 337/373 (90%), Gaps = 1/373 (0%)
Query: 2 GTGTHYAVMSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLI 61
G GT AVMSS +Y++ R Y++DNTIDGLYIAPAFMDKLV+HI+KNFM+LPNIKVPLI
Sbjct: 43 GGGTQTAVMSSLEYLNTAQRVYSMDNTIDGLYIAPAFMDKLVIHISKNFMALPNIKVPLI 102
Query: 62 LGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKK- 120
LG+WGGKGQGKSFQCELVF+K+GINPI MSAGELESGNAGEPAKLIRQRYREAADIIKK
Sbjct: 103 LGVWGGKGQGKSFQCELVFSKLGINPIAMSAGELESGNAGEPAKLIRQRYREAADIIKKK 162
Query: 121 GKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVP 180
G+MC L INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPT VQLPG+Y KEE PRVP
Sbjct: 163 GQMCVLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGIYTKEELPRVP 222
Query: 181 IIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPG 240
IIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFR D+V D+DIVKLVDTFPG
Sbjct: 223 IIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRTDDVPDEDIVKLVDTFPG 282
Query: 241 QSIDFFGALRARVYDDEVRKWISGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNM 300
QSIDFFGALRARVYDDEVRKWI+ VGV +IG LVNSK+ PTF +P MT++KLLEYGNM
Sbjct: 283 QSIDFFGALRARVYDDEVRKWITQVGVENIGPKLVNSKDGPPTFPKPPMTIDKLLEYGNM 342
Query: 301 IVQEQENVKRVQLADKYLSEAALGEANEDAIQSGNFYGKAAQQMNVPVPEGCTDPTAENF 360
+VQEQENVKR LADKY+ ++LG+ANED + FYGKAAQQ+N+PVPEGCTDP A NF
Sbjct: 343 LVQEQENVKRYHLADKYMKGSSLGDANEDEREKDTFYGKAAQQINLPVPEGCTDPNAANF 402
Query: 361 DPTARSDDGSCQY 373
DPTARSDDG+C+Y
Sbjct: 403 DPTARSDDGTCEY 415
>gi|359478916|ref|XP_003632187.1| PREDICTED: ribulose bisphosphate carboxylase/oxygenase activase 2,
chloroplastic isoform 2 [Vitis vinifera]
Length = 440
Score = 644 bits (1660), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 304/339 (89%), Positives = 321/339 (94%)
Query: 1 MGTGTHYAVMSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPL 60
M +GTHYAVMSSY+Y+S GLR YNLDN +DG YIAPAFMDKLVVHITKNFM+LPNIKVPL
Sbjct: 100 MQSGTHYAVMSSYEYLSTGLRQYNLDNNMDGFYIAPAFMDKLVVHITKNFMTLPNIKVPL 159
Query: 61 ILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKK 120
ILGIWGGKGQGKSFQCELVF+KMGINPIMMSAGELESGNAGEPAKLIRQRYREAADII+K
Sbjct: 160 ILGIWGGKGQGKSFQCELVFSKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIRK 219
Query: 121 GKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVP 180
GKMCCL INDLDAGAGR+GGTTQYTVNNQMVNATLMNIADNPT VQLPGMYNKEENPRVP
Sbjct: 220 GKMCCLFINDLDAGAGRLGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRVP 279
Query: 181 IIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPG 240
IIVTGNDFSTLYAPLIRDGRMEKFYWAP REDRIGVCKGIFR+DNV DDDIVK+VDTFPG
Sbjct: 280 IIVTGNDFSTLYAPLIRDGRMEKFYWAPNREDRIGVCKGIFRSDNVPDDDIVKIVDTFPG 339
Query: 241 QSIDFFGALRARVYDDEVRKWISGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNM 300
QSIDFFGALRARVYDDEVRKWISGVGV IGK LVNSKE PTFEQP+MT+EKLLEYGNM
Sbjct: 340 QSIDFFGALRARVYDDEVRKWISGVGVDFIGKKLVNSKEGPPTFEQPKMTIEKLLEYGNM 399
Query: 301 IVQEQENVKRVQLADKYLSEAALGEANEDAIQSGNFYGK 339
+V EQENVKRVQLADKYLSEAALG+AN D+I+ G FYG+
Sbjct: 400 LVMEQENVKRVQLADKYLSEAALGDANVDSIERGTFYGQ 438
>gi|12643998|sp|P10871.2|RCA_SPIOL RecName: Full=Ribulose bisphosphate carboxylase/oxygenase activase,
chloroplastic; Short=RA; Short=RuBisCO activase; Flags:
Precursor
gi|4261546|gb|AAD13840.1|S45033_1 ribulosebisphosphate carboxylase/oxygenase activase [Spinacia
oleracea]
Length = 472
Score = 643 bits (1659), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 296/372 (79%), Positives = 334/372 (89%)
Query: 4 GTHYAVMSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILG 63
GTH + SS++Y SQGLR Y++DN + YIAPAFMDKLVVHITKNF++LPNIK+PLILG
Sbjct: 101 GTHVPIQSSFEYESQGLRKYDIDNMLGDFYIAPAFMDKLVVHITKNFLNLPNIKIPLILG 160
Query: 64 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 123
+WGGKGQGKSFQCELVFAK+GINPIMMSAGELESGNAGEPAKLIRQRYREAAD+I KGKM
Sbjct: 161 VWGGKGQGKSFQCELVFAKLGINPIMMSAGELESGNAGEPAKLIRQRYREAADLIAKGKM 220
Query: 124 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 183
C L INDL+ GAGRMGGTTQYTVNNQMVNATLMNIADNPT VQLPGMYNK++N RVPIIV
Sbjct: 221 CALFINDLEPGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQDNARVPIIV 280
Query: 184 TGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSI 243
TGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVC GIF+ D V + +VKLVD FPGQSI
Sbjct: 281 TGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCTGIFKTDKVPAEHVVKLVDAFPGQSI 340
Query: 244 DFFGALRARVYDDEVRKWISGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQ 303
DFFGALRARVY DEVRKW++ VGV ++GK LVNSK+ P FEQP MT++KL+EYGNM+VQ
Sbjct: 341 DFFGALRARVYHDEVRKWVNSVGVDNVGKKLVNSKDGPPVFEQPEMTLQKLMEYGNMLVQ 400
Query: 304 EQENVKRVQLADKYLSEAALGEANEDAIQSGNFYGKAAQQMNVPVPEGCTDPTAENFDPT 363
EQENVKRVQLAD+Y+S AALG+AN+DAI G F+GKAAQQ+++PV +GCTDP A+N+DPT
Sbjct: 401 EQENVKRVQLADQYMSSAALGDANKDAIDRGTFFGKAAQQVSLPVAQGCTDPEAKNYDPT 460
Query: 364 ARSDDGSCQYTL 375
ARSDDGSC Y L
Sbjct: 461 ARSDDGSCTYNL 472
>gi|242072105|ref|XP_002451329.1| hypothetical protein SORBIDRAFT_05g027880 [Sorghum bicolor]
gi|241937172|gb|EES10317.1| hypothetical protein SORBIDRAFT_05g027880 [Sorghum bicolor]
Length = 473
Score = 643 bits (1658), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 308/375 (82%), Positives = 336/375 (89%), Gaps = 12/375 (3%)
Query: 1 MGTGTHYAVMSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPL 60
MG GTH AV+SSYDYISQGLR YN T+DG YIAPAFMDKLV+HI KNFM+LPNIKVPL
Sbjct: 108 MGDGTHVAVLSSYDYISQGLRQYN---TMDGYYIAPAFMDKLVLHIAKNFMTLPNIKVPL 164
Query: 61 ILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKK 120
ILGIWGGKGQGKSFQCELVFAKMGINPI+MSAGELESGNAGEPAKLIRQRYREAAD+I K
Sbjct: 165 ILGIWGGKGQGKSFQCELVFAKMGINPIVMSAGELESGNAGEPAKLIRQRYREAADLISK 224
Query: 121 GKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVP 180
GKM CL INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPT VQLPGMY+K +NPRVP
Sbjct: 225 GKMSCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYSKVDNPRVP 284
Query: 181 IIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPG 240
IIVTGNDFSTLYAPLIRDGRM+KFYWAPTR+DRIGVCKGIFR D V D+ +V+LVD FPG
Sbjct: 285 IIVTGNDFSTLYAPLIRDGRMDKFYWAPTRDDRIGVCKGIFRTDGVPDEHVVQLVDAFPG 344
Query: 241 QSIDFFGALRARVYDDEVRKWISGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNM 300
QSIDFFGALRARVYDDEVR+W++ GV +I + LVNSKEA PTFEQPRMT++KL+EYG M
Sbjct: 345 QSIDFFGALRARVYDDEVRRWVAETGVENIARRLVNSKEAPPTFEQPRMTLDKLMEYGRM 404
Query: 301 IVQEQENVKRVQLADKYLSEAALGEANEDAIQSGNFYGKAAQQMN--VPVPEGCTDPTAE 358
+ +EQENVKRVQLADKYL+EAALG+AN+ FYGKAAQQ++ VPVPEGCTDP A
Sbjct: 405 LEEEQENVKRVQLADKYLTEAALGDAND-------FYGKAAQQVHVPVPVPEGCTDPRAG 457
Query: 359 NFDPTARSDDGSCQY 373
NFDP ARSDDGSC Y
Sbjct: 458 NFDPVARSDDGSCVY 472
>gi|302760819|ref|XP_002963832.1| hypothetical protein SELMODRAFT_79425 [Selaginella moellendorffii]
gi|300169100|gb|EFJ35703.1| hypothetical protein SELMODRAFT_79425 [Selaginella moellendorffii]
Length = 451
Score = 642 bits (1656), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 305/373 (81%), Positives = 337/373 (90%), Gaps = 1/373 (0%)
Query: 2 GTGTHYAVMSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLI 61
G GT AVMSS +Y++ R Y++DNTIDGLYIAPAFMDKLV+HI+KNFM+LPNIKVPLI
Sbjct: 43 GGGTQTAVMSSLEYLNTAQRVYSMDNTIDGLYIAPAFMDKLVIHISKNFMALPNIKVPLI 102
Query: 62 LGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKK- 120
LG+WGGKGQGKSFQCELVF+K+GINPI MSAGELESGNAGEPAKLIRQRYREAADIIKK
Sbjct: 103 LGVWGGKGQGKSFQCELVFSKLGINPIAMSAGELESGNAGEPAKLIRQRYREAADIIKKK 162
Query: 121 GKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVP 180
G+MC L INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPT VQLPG+Y KEE PRVP
Sbjct: 163 GQMCVLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGIYTKEELPRVP 222
Query: 181 IIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPG 240
IIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFR+D V D+DIVKLVDTFPG
Sbjct: 223 IIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRSDEVPDEDIVKLVDTFPG 282
Query: 241 QSIDFFGALRARVYDDEVRKWISGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNM 300
QSIDFFGALRARVYDDEVRKWI+ VGV +IG LVNSK+ PTF +P MT++KLLEYGNM
Sbjct: 283 QSIDFFGALRARVYDDEVRKWITQVGVENIGPKLVNSKDGPPTFPKPPMTIDKLLEYGNM 342
Query: 301 IVQEQENVKRVQLADKYLSEAALGEANEDAIQSGNFYGKAAQQMNVPVPEGCTDPTAENF 360
+V+EQENVKR LADKY+ ++LG+ANED + FYGKAAQQ+N+PVPEGCTDP A NF
Sbjct: 343 LVKEQENVKRYHLADKYMKGSSLGDANEDEREKDTFYGKAAQQINLPVPEGCTDPNAANF 402
Query: 361 DPTARSDDGSCQY 373
DPTARSDDG+C+Y
Sbjct: 403 DPTARSDDGTCEY 415
>gi|410927500|gb|AFV93501.1| chloroplast ribulose bisphosphate carboxylase/oxygenase activase
alpha1, partial [Gossypium barbadense]
Length = 344
Score = 640 bits (1652), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 306/337 (90%), Positives = 318/337 (94%)
Query: 1 MGTGTHYAVMSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPL 60
M GTHYAVMSSY+YISQGL+TYNLDN +DG YIAPAFMDKLVVHI+KNFMSLPNIKVPL
Sbjct: 8 MNDGTHYAVMSSYEYISQGLKTYNLDNNMDGFYIAPAFMDKLVVHISKNFMSLPNIKVPL 67
Query: 61 ILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKK 120
ILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKK
Sbjct: 68 ILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKK 127
Query: 121 GKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVP 180
GKMC L INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPT VQLPGMYNKEENPRVP
Sbjct: 128 GKMCALFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRVP 187
Query: 181 IIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPG 240
IIVTGNDFSTLYAPLIRDGRMEKFYWAPTR+DRIGVCKGIFR D V D+DIVKLVDTFPG
Sbjct: 188 IIVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRIGVCKGIFRTDGVRDEDIVKLVDTFPG 247
Query: 241 QSIDFFGALRARVYDDEVRKWISGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNM 300
QSIDFFGALRARVYDDEVRKWIS VGV S+GK LVNS+E PTFEQP+MT+EKLLEYGNM
Sbjct: 248 QSIDFFGALRARVYDDEVRKWISEVGVASVGKKLVNSREGPPTFEQPKMTIEKLLEYGNM 307
Query: 301 IVQEQENVKRVQLADKYLSEAALGEANEDAIQSGNFY 337
+V EQENVKRVQLADKYLSEAALGEANED+I G FY
Sbjct: 308 LVAEQENVKRVQLADKYLSEAALGEANEDSINRGTFY 344
>gi|68565781|sp|Q7X999.1|RCA2_LARTR RecName: Full=Ribulose bisphosphate carboxylase/oxygenase activase
2, chloroplastic; Short=RA 2; Short=RuBisCO activase 2;
AltName: Full=RuBisCO activase beta form; Flags:
Precursor
gi|32481067|gb|AAP83930.1| Rubisco activase beta form precursor [Larrea tridentata]
Length = 435
Score = 640 bits (1651), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 301/336 (89%), Positives = 320/336 (95%)
Query: 1 MGTGTHYAVMSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPL 60
M +GTHYAVMSSYDYISQGLR YNLDN +DG YIAPAFMDKLVVHITKNF+SLPNIK+PL
Sbjct: 100 MQSGTHYAVMSSYDYISQGLRQYNLDNNMDGFYIAPAFMDKLVVHITKNFLSLPNIKIPL 159
Query: 61 ILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKK 120
ILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKK
Sbjct: 160 ILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKK 219
Query: 121 GKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVP 180
GKMCCL INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPT VQLPGMYNKEENPRVP
Sbjct: 220 GKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRVP 279
Query: 181 IIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPG 240
IIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFR DNV ++DIVK+VD FPG
Sbjct: 280 IIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRTDNVPEEDIVKVVDQFPG 339
Query: 241 QSIDFFGALRARVYDDEVRKWISGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNM 300
QSIDFFGALRARVYDDEVRKW+S VGV +IGK LVNSKE PTFEQP+MT++KLL+YGNM
Sbjct: 340 QSIDFFGALRARVYDDEVRKWVSEVGVDTIGKKLVNSKEGPPTFEQPKMTIDKLLQYGNM 399
Query: 301 IVQEQENVKRVQLADKYLSEAALGEANEDAIQSGNF 336
+V+EQENVKRVQLADKY+SEAALG+AN+DAI+ G F
Sbjct: 400 LVEEQENVKRVQLADKYMSEAALGDANQDAIKRGTF 435
>gi|16471|emb|CAA32429.1| unnamed protein product [Arabidopsis thaliana]
Length = 473
Score = 640 bits (1650), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 306/375 (81%), Positives = 329/375 (87%), Gaps = 1/375 (0%)
Query: 1 MGTGTHYAVMSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPL 60
MGTGTH+AV+SSY+Y+SQGLR YNLDN +DG YIAPAFMDKLVVHITKNF++LPNIKVPL
Sbjct: 100 MGTGTHHAVLSSYEYVSQGLRQYNLDNMMDGFYIAPAFMDKLVVHITKNFLTLPNIKVPL 159
Query: 61 ILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKK 120
ILG GGKGQGKSFQCELV AKMGINPIMMSAGELESGNAGE KLIRQRYREAAD+IKK
Sbjct: 160 ILGSRGGKGQGKSFQCELVMAKMGINPIMMSAGELESGNAGEVRKLIRQRYREAADLIKK 219
Query: 121 GKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVP 180
GKMCCL INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPT VQLPGMYNKEEN RVP
Sbjct: 220 GKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENARVP 279
Query: 181 IIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPG 240
II TGNDFSTLY PLI DGRMEKF PTREDRIGV GIFR D + D+DIV LVD FPG
Sbjct: 280 IICTGNDFSTLYGPLILDGRMEKFLTGPTREDRIGVW-GIFRTDKIKDEDIVTLVDQFPG 338
Query: 241 QSIDFFGALRARVYDDEVRKWISGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNM 300
QSIDFFGALRARVYDDEVRK++ +GV IGK LVNS+E P FEQP MT EKL+EYGNM
Sbjct: 339 QSIDFFGALRARVYDDEVRKFVESLGVEKIGKRLVNSREGPPVFEQPEMTYEKLMEYGNM 398
Query: 301 IVQEQENVKRVQLADKYLSEAALGEANEDAIQSGNFYGKAAQQMNVPVPEGCTDPTAENF 360
+V EQENVKRVQLA+ YLS+AALG+AN DAI G FYGK A ++N+PVPEGCTDP AENF
Sbjct: 399 LVMEQENVKRVQLAETYLSQAALGDANADAIGRGTFYGKGAHEVNLPVPEGCTDPVAENF 458
Query: 361 DPTARSDDGSCQYTL 375
DPTARSDDG+C Y
Sbjct: 459 DPTARSDDGTCVYNF 473
>gi|3914605|sp|Q40281.1|RCA_MALDO RecName: Full=Ribulose bisphosphate carboxylase/oxygenase activase,
chloroplastic; Short=RA; Short=RuBisCO activase; Flags:
Precursor
gi|415852|emb|CAA79857.1| ribulose-1,5-bisphosphate carboxylase/oxygenase activase [Malus x
domestica]
Length = 437
Score = 636 bits (1640), Expect = e-180, Method: Compositional matrix adjust.
Identities = 300/337 (89%), Positives = 319/337 (94%)
Query: 2 GTGTHYAVMSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLI 61
G+GTH+A+MSSY+YIS GLR YN DN +DG YIAPAFMDKLVVHITKNFM+LPN+KVPLI
Sbjct: 101 GSGTHFAIMSSYEYISTGLRQYNFDNNMDGYYIAPAFMDKLVVHITKNFMTLPNMKVPLI 160
Query: 62 LGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKG 121
LGIWGGKGQGKSFQCELVFAKM I+PIMMSAGELESGNAGEPAKLIRQRYREAADII+KG
Sbjct: 161 LGIWGGKGQGKSFQCELVFAKMRISPIMMSAGELESGNAGEPAKLIRQRYREAADIIRKG 220
Query: 122 KMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPI 181
KMC L INDLDAGAGR+GGTTQYTVNNQMVNATLMNIADNPT VQLPGMYNKEENPRVPI
Sbjct: 221 KMCALFINDLDAGAGRLGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRVPI 280
Query: 182 IVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQ 241
IVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVC GIFR+DNVA +DIVKLVDTFPGQ
Sbjct: 281 IVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCIGIFRSDNVAKEDIVKLVDTFPGQ 340
Query: 242 SIDFFGALRARVYDDEVRKWISGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMI 301
SIDFFGALRARVYDDEVRKWI+GVGV SIGK LVNSKE PTFEQP+MT+EKLLEYGNM+
Sbjct: 341 SIDFFGALRARVYDDEVRKWITGVGVDSIGKKLVNSKEGPPTFEQPKMTIEKLLEYGNML 400
Query: 302 VQEQENVKRVQLADKYLSEAALGEANEDAIQSGNFYG 338
VQEQENVKRVQLADKYLSEAALG+AN DA+ +G FYG
Sbjct: 401 VQEQENVKRVQLADKYLSEAALGDANSDAMNTGTFYG 437
>gi|410927512|gb|AFV93502.1| chloroplast ribulose bisphosphate carboxylase/oxygenase activase
alpha 2, partial [Gossypium barbadense]
Length = 344
Score = 636 bits (1640), Expect = e-180, Method: Compositional matrix adjust.
Identities = 302/337 (89%), Positives = 317/337 (94%)
Query: 1 MGTGTHYAVMSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPL 60
M GTHYAVMSSY+Y+SQGL+TYNLDN +DG YIAPAFMDKLVVHITKNFMSLPNIKVPL
Sbjct: 8 MNDGTHYAVMSSYEYLSQGLKTYNLDNNMDGFYIAPAFMDKLVVHITKNFMSLPNIKVPL 67
Query: 61 ILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKK 120
ILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKK
Sbjct: 68 ILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKK 127
Query: 121 GKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVP 180
GKMC L INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPT VQLPGMYNKEENPRVP
Sbjct: 128 GKMCALFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRVP 187
Query: 181 IIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPG 240
IIVTGNDFSTLYAPLIRDGRMEKFYWAPTR+DR+GVCKGIFR D + D+DIVKLVDTFPG
Sbjct: 188 IIVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRVGVCKGIFRTDGIPDEDIVKLVDTFPG 247
Query: 241 QSIDFFGALRARVYDDEVRKWISGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNM 300
QSIDFFGALRARVYDDEVRKWIS VGV +GK LVNS++ PTFEQP+MT+EKLLEYGNM
Sbjct: 248 QSIDFFGALRARVYDDEVRKWISDVGVAGVGKKLVNSRDGPPTFEQPKMTIEKLLEYGNM 307
Query: 301 IVQEQENVKRVQLADKYLSEAALGEANEDAIQSGNFY 337
+V EQENVKRVQLADKYLSEAALGEANED+I G FY
Sbjct: 308 LVAEQENVKRVQLADKYLSEAALGEANEDSINRGTFY 344
>gi|225449432|ref|XP_002282979.1| PREDICTED: ribulose bisphosphate carboxylase/oxygenase activase,
chloroplastic [Vitis vinifera]
Length = 438
Score = 635 bits (1637), Expect = e-179, Method: Compositional matrix adjust.
Identities = 297/337 (88%), Positives = 319/337 (94%)
Query: 1 MGTGTHYAVMSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPL 60
M GTHYAVMSSY+YIS GLR YNLDN +DG YIAPAFMDKLVVHITKNFM+LPNIKVPL
Sbjct: 101 MDAGTHYAVMSSYEYISTGLRQYNLDNNMDGFYIAPAFMDKLVVHITKNFMTLPNIKVPL 160
Query: 61 ILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKK 120
ILGIWGGKGQGKSFQCELVF+KMGINPIMMSAGELESGNAGEPAKLIRQRYREAADII+K
Sbjct: 161 ILGIWGGKGQGKSFQCELVFSKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIRK 220
Query: 121 GKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVP 180
GKMCCL INDLDAGAGR+GGTTQYTVNNQMVNATLMNIADNPT VQLPGMYNKEENPRVP
Sbjct: 221 GKMCCLFINDLDAGAGRLGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRVP 280
Query: 181 IIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPG 240
+IVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVC GIFR DNV +DIVKLVDTFPG
Sbjct: 281 VIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCTGIFRTDNVPVEDIVKLVDTFPG 340
Query: 241 QSIDFFGALRARVYDDEVRKWISGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNM 300
QSIDFFGALRARVYDD VR WI+G+GV ++GK LVNSKE P+FEQP+MT+EKLLEYG+M
Sbjct: 341 QSIDFFGALRARVYDDMVRDWIAGIGVDTVGKRLVNSKEGPPSFEQPKMTLEKLLEYGSM 400
Query: 301 IVQEQENVKRVQLADKYLSEAALGEANEDAIQSGNFY 337
+VQEQENVKRVQLADKYL+EAALG+ANEDAI+SG+F+
Sbjct: 401 LVQEQENVKRVQLADKYLNEAALGDANEDAIKSGSFF 437
>gi|12620881|gb|AAG61120.1| ribulose-1,5-bisphosphate carboxylase/oxygenase activase 1
[Gossypium hirsutum]
Length = 438
Score = 635 bits (1637), Expect = e-179, Method: Compositional matrix adjust.
Identities = 303/336 (90%), Positives = 315/336 (93%)
Query: 1 MGTGTHYAVMSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPL 60
M GTHYAVMSSY+YISQGLRTY+LDN +DG YIAPAFMDKLVVHITKN+M+LPNIKVPL
Sbjct: 103 MNDGTHYAVMSSYEYISQGLRTYDLDNNMDGFYIAPAFMDKLVVHITKNYMTLPNIKVPL 162
Query: 61 ILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKK 120
ILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKK
Sbjct: 163 ILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKK 222
Query: 121 GKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVP 180
GKMCCL INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPT VQLPGMYNKEENPRVP
Sbjct: 223 GKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRVP 282
Query: 181 IIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPG 240
IIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVC GIFR DNV DDIVKLVDTFPG
Sbjct: 283 IIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCTGIFRTDNVPVDDIVKLVDTFPG 342
Query: 241 QSIDFFGALRARVYDDEVRKWISGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNM 300
QSIDFFGALRARVYDDEVRKWI VGV S+GK LVNS+E P+FEQP MT+EKLLEYGNM
Sbjct: 343 QSIDFFGALRARVYDDEVRKWIGEVGVNSVGKKLVNSREGPPSFEQPTMTIEKLLEYGNM 402
Query: 301 IVQEQENVKRVQLADKYLSEAALGEANEDAIQSGNF 336
+V EQENVKRVQLADKYLSEAALG AN+DAI+ G F
Sbjct: 403 LVAEQENVKRVQLADKYLSEAALGNANDDAIKRGAF 438
>gi|13430338|gb|AAK25801.1|AF338240_1 rubisco activase [Zantedeschia aethiopica]
Length = 435
Score = 630 bits (1624), Expect = e-178, Method: Compositional matrix adjust.
Identities = 293/338 (86%), Positives = 321/338 (94%)
Query: 1 MGTGTHYAVMSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPL 60
MG GTH V+SSY+YIS GLR++NLDNT++GLYIAPAFMDKLVVHITKNFM+LPNIK+PL
Sbjct: 98 MGDGTHNPVLSSYEYISTGLRSFNLDNTVNGLYIAPAFMDKLVVHITKNFMNLPNIKIPL 157
Query: 61 ILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKK 120
ILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADII+K
Sbjct: 158 ILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIRK 217
Query: 121 GKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVP 180
GKMCCL INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPT VQLPGMYNK+ENPRVP
Sbjct: 218 GKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENPRVP 277
Query: 181 IIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPG 240
IIVTGNDFSTLYAPLIRDGRMEKFYWAPTR+DR+GVC GIFR+DNV +D++KLVDTFPG
Sbjct: 278 IIVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRVGVCTGIFRSDNVPKEDVIKLVDTFPG 337
Query: 241 QSIDFFGALRARVYDDEVRKWISGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNM 300
QSIDFFGALRARVYDDEVRKWI+ +GV +GK LVNS E PTF QP+MT++KLLEYGNM
Sbjct: 338 QSIDFFGALRARVYDDEVRKWIAEIGVDGVGKRLVNSLEGPPTFAQPKMTLDKLLEYGNM 397
Query: 301 IVQEQENVKRVQLADKYLSEAALGEANEDAIQSGNFYG 338
+VQEQENVKRVQLADKYLSEAALG+AN+DAI++G+FYG
Sbjct: 398 LVQEQENVKRVQLADKYLSEAALGDANQDAIKTGSFYG 435
>gi|118486993|gb|ABK95328.1| unknown [Populus trichocarpa]
Length = 361
Score = 629 bits (1621), Expect = e-177, Method: Compositional matrix adjust.
Identities = 300/338 (88%), Positives = 320/338 (94%), Gaps = 1/338 (0%)
Query: 2 GTGTHYAVMSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLI 61
GTGTH V+SSY+Y+SQGLRTYNLDN +DG YIAPAFMDK+VVHI+KNFMSLPNIKVPLI
Sbjct: 24 GTGTHNPVLSSYEYLSQGLRTYNLDNMMDGFYIAPAFMDKIVVHISKNFMSLPNIKVPLI 83
Query: 62 LGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKK- 120
LGIWGGKGQGKSFQCELVFAKMGI+PIMMSAGELESGNAGEPAKLIRQRYREAADIIKK
Sbjct: 84 LGIWGGKGQGKSFQCELVFAKMGISPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKK 143
Query: 121 GKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVP 180
GKMCCL INDLDAGAGR+GGTTQYTVNNQMVNATLMNIADNPT VQLPGMYNKE+NPRVP
Sbjct: 144 GKMCCLFINDLDAGAGRLGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEDNPRVP 203
Query: 181 IIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPG 240
+IVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVC GIF+ DNV +DDIVKLVDTFPG
Sbjct: 204 VIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCIGIFKTDNVPEDDIVKLVDTFPG 263
Query: 241 QSIDFFGALRARVYDDEVRKWISGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNM 300
QSIDFFGALRARVYDDEVRKW+SGVGV SIGK LVNS+E PTFEQP MT+EKL EYGNM
Sbjct: 264 QSIDFFGALRARVYDDEVRKWVSGVGVESIGKKLVNSREGPPTFEQPPMTVEKLFEYGNM 323
Query: 301 IVQEQENVKRVQLADKYLSEAALGEANEDAIQSGNFYG 338
+V+EQENVKRVQLADKYLS+AALGEAN+DAI+ G FYG
Sbjct: 324 LVKEQENVKRVQLADKYLSDAALGEANQDAIERGTFYG 361
>gi|224101023|ref|XP_002312110.1| predicted protein [Populus trichocarpa]
gi|222851930|gb|EEE89477.1| predicted protein [Populus trichocarpa]
Length = 438
Score = 628 bits (1620), Expect = e-177, Method: Compositional matrix adjust.
Identities = 298/336 (88%), Positives = 318/336 (94%), Gaps = 1/336 (0%)
Query: 2 GTGTHYAVMSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLI 61
GTGTH V+SSY+Y+SQGLRTYNLDN +DG YIAPAFMDK+VVHI+KNFMSLPNIKVPLI
Sbjct: 103 GTGTHNPVLSSYEYLSQGLRTYNLDNMMDGFYIAPAFMDKIVVHISKNFMSLPNIKVPLI 162
Query: 62 LGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKK- 120
LGIWGGKGQGKSFQCELVFAKMGI+PIMMSAGELESGNAGEPAKLIRQRYREAADIIKK
Sbjct: 163 LGIWGGKGQGKSFQCELVFAKMGISPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKK 222
Query: 121 GKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVP 180
GKMCCL INDLDAGAGR+GGTTQYTVNNQMVNATLMNIADNPT VQLPGMYNKE+NPRVP
Sbjct: 223 GKMCCLFINDLDAGAGRLGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEDNPRVP 282
Query: 181 IIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPG 240
+IVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVC GIF+ DNV +DDIVKLVDTFPG
Sbjct: 283 VIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCIGIFKTDNVPEDDIVKLVDTFPG 342
Query: 241 QSIDFFGALRARVYDDEVRKWISGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNM 300
QSIDFFGALRARVYDDEVRKW+SGVGV SIGK LVNS+E PTFEQP MT+EKL EYGNM
Sbjct: 343 QSIDFFGALRARVYDDEVRKWVSGVGVESIGKKLVNSREGPPTFEQPPMTVEKLFEYGNM 402
Query: 301 IVQEQENVKRVQLADKYLSEAALGEANEDAIQSGNF 336
+V+EQENVKRVQLADKYLS+AALGEAN+DAI+ G F
Sbjct: 403 LVKEQENVKRVQLADKYLSDAALGEANQDAIERGTF 438
>gi|7960277|gb|AAF71272.1|AF251264_1 ribulose bisphosphate carboxylase activase B [Triticum aestivum]
Length = 432
Score = 627 bits (1618), Expect = e-177, Method: Compositional matrix adjust.
Identities = 293/339 (86%), Positives = 318/339 (93%)
Query: 1 MGTGTHYAVMSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPL 60
MG GTH A++SSY+YISQGLR Y+ DNT+DGLYIAPAFMDKL+VH+ KNFM+LPNIKVPL
Sbjct: 94 MGDGTHEAILSSYEYISQGLRKYDFDNTMDGLYIAPAFMDKLIVHLAKNFMTLPNIKVPL 153
Query: 61 ILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKK 120
ILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKK
Sbjct: 154 ILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKK 213
Query: 121 GKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVP 180
GKMCCL INDLDAGAGRMGGTTQYTVNNQMVNATLMNIAD PT VQ PGMYNKEENPRVP
Sbjct: 214 GKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADAPTNVQFPGMYNKEENPRVP 273
Query: 181 IIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPG 240
IIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFR DNV D+ +V+LVDTFPG
Sbjct: 274 IIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRTDNVPDEAVVRLVDTFPG 333
Query: 241 QSIDFFGALRARVYDDEVRKWISGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNM 300
QSIDFFGALRARVYDDEVRKW+ +GV +I K LVNS+E PTF+QP+MT+EKL+EYG+M
Sbjct: 334 QSIDFFGALRARVYDDEVRKWVGEIGVENISKRLVNSREGPPTFDQPKMTIEKLMEYGHM 393
Query: 301 IVQEQENVKRVQLADKYLSEAALGEANEDAIQSGNFYGK 339
+VQEQENVKRVQLADKYLSEAALG+AN+DA+ +G FYGK
Sbjct: 394 LVQEQENVKRVQLADKYLSEAALGQANDDAMATGAFYGK 432
>gi|357155667|ref|XP_003577196.1| PREDICTED: ribulose bisphosphate carboxylase/oxygenase activase B,
chloroplastic-like [Brachypodium distachyon]
Length = 440
Score = 627 bits (1616), Expect = e-177, Method: Compositional matrix adjust.
Identities = 295/340 (86%), Positives = 317/340 (93%)
Query: 1 MGTGTHYAVMSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPL 60
MG GTH AV+SSY+YISQGLR Y+ DNT+DGLYIAPAFMDKLVVH+ KNFM+LPNIKVPL
Sbjct: 100 MGDGTHEAVLSSYEYISQGLRQYDFDNTMDGLYIAPAFMDKLVVHLAKNFMTLPNIKVPL 159
Query: 61 ILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKK 120
ILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKK
Sbjct: 160 ILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKK 219
Query: 121 GKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVP 180
GKMCCL INDLDAGAGRMGGTTQYTVNNQMVNATLMNIAD PT VQLPGMYNKEENPRVP
Sbjct: 220 GKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADAPTNVQLPGMYNKEENPRVP 279
Query: 181 IIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPG 240
IIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFR D V D+ +V+LVD FPG
Sbjct: 280 IIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRTDGVPDEAVVRLVDMFPG 339
Query: 241 QSIDFFGALRARVYDDEVRKWISGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNM 300
QSIDFFGALRARVYDDEVRKW+ +GV +I K LVNSKE P FEQP+MT+ KL+EYG+M
Sbjct: 340 QSIDFFGALRARVYDDEVRKWVGEIGVENISKRLVNSKEGPPKFEQPKMTISKLMEYGHM 399
Query: 301 IVQEQENVKRVQLADKYLSEAALGEANEDAIQSGNFYGKA 340
+VQEQENVKRVQLADKYLSEAALGEAN+DA+++G+FY KA
Sbjct: 400 LVQEQENVKRVQLADKYLSEAALGEANDDAMKTGSFYAKA 439
>gi|255635315|gb|ACU18011.1| unknown [Glycine max]
gi|290766487|gb|ADD60246.1| beta-form rubisco activase [Glycine max]
gi|290766491|gb|ADD60248.1| beta-form rubisco activase [Glycine max]
Length = 443
Score = 626 bits (1614), Expect = e-177, Method: Compositional matrix adjust.
Identities = 297/334 (88%), Positives = 313/334 (93%), Gaps = 1/334 (0%)
Query: 4 GTHYAVMSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILG 63
GTHYAVMSSY+Y+S GLR Y LDN +DG YIAPAFMDKLVVHI+KNFM+LPNIKVPLILG
Sbjct: 109 GTHYAVMSSYEYLSTGLRQY-LDNKMDGFYIAPAFMDKLVVHISKNFMTLPNIKVPLILG 167
Query: 64 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 123
IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAD+IKKGKM
Sbjct: 168 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADMIKKGKM 227
Query: 124 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 183
C L INDLDAGAGR+GGTTQYTVNNQMVNATLMNIADNPT VQLPGMYNKEENPRVPIIV
Sbjct: 228 CALFINDLDAGAGRLGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRVPIIV 287
Query: 184 TGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSI 243
TGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVC GIFR D + + DIVKLVDTFPGQSI
Sbjct: 288 TGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCTGIFRTDGIPEQDIVKLVDTFPGQSI 347
Query: 244 DFFGALRARVYDDEVRKWISGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQ 303
DFFGALRARVYDDEVRKWISGVGV S+GK LVNSK+ PTFEQP+MT+EKLL YGNM+VQ
Sbjct: 348 DFFGALRARVYDDEVRKWISGVGVDSVGKKLVNSKDGPPTFEQPKMTLEKLLLYGNMLVQ 407
Query: 304 EQENVKRVQLADKYLSEAALGEANEDAIQSGNFY 337
EQENVKRVQLADKYL+EAALG ANEDAIQ G F+
Sbjct: 408 EQENVKRVQLADKYLNEAALGNANEDAIQRGTFF 441
>gi|8918361|dbj|BAA97584.1| RuBisCO activase small isoform precursor [Oryza sativa]
gi|62733169|gb|AAX95286.1| RuBisCO activase small isoform precursor [Oryza sativa Japonica
Group]
gi|77552726|gb|ABA95523.1| Ribulose bisphosphate carboxylase/oxygenase activase, chloroplast
precursor, putative, expressed [Oryza sativa Japonica
Group]
gi|215694316|dbj|BAG89309.1| unnamed protein product [Oryza sativa Japonica Group]
gi|347737190|gb|AEP20546.1| ribulose bisphosphate carboxylase activase small isoform [Oryza
sativa Japonica Group]
Length = 433
Score = 625 bits (1612), Expect = e-177, Method: Compositional matrix adjust.
Identities = 292/339 (86%), Positives = 320/339 (94%)
Query: 2 GTGTHYAVMSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLI 61
G GTH AV+SSY+Y+SQGLRTY+ DNT+ G YIAPAFMDKLVVHI+KNFM+LPNIKVPLI
Sbjct: 92 GDGTHEAVLSSYEYLSQGLRTYDFDNTMGGFYIAPAFMDKLVVHISKNFMTLPNIKVPLI 151
Query: 62 LGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKG 121
LGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKG
Sbjct: 152 LGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKG 211
Query: 122 KMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPI 181
KMCCL INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPT VQLPGMYNKE+NPRVPI
Sbjct: 212 KMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEDNPRVPI 271
Query: 182 IVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQ 241
IVTGNDFSTLYAPLIRDGRMEKFYWAPTR+DR+GVCKGIFR DNV D+DIVK+VD+FPGQ
Sbjct: 272 IVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRVGVCKGIFRTDNVPDEDIVKIVDSFPGQ 331
Query: 242 SIDFFGALRARVYDDEVRKWISGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMI 301
SIDFFGALRARVYDDEVRKW+S GV +IGK LVNS+E P FEQP+MT+EKL+EYG M+
Sbjct: 332 SIDFFGALRARVYDDEVRKWVSDTGVENIGKRLVNSREGPPEFEQPKMTIEKLMEYGYML 391
Query: 302 VQEQENVKRVQLADKYLSEAALGEANEDAIQSGNFYGKA 340
V+EQENVKRVQLA++YLSEAALG+AN DA+++G+FYG A
Sbjct: 392 VKEQENVKRVQLAEQYLSEAALGDANSDAMKTGSFYGSA 430
>gi|356569334|ref|XP_003552857.1| PREDICTED: ribulose bisphosphate carboxylase/oxygenase activase,
chloroplastic-like [Glycine max]
Length = 431
Score = 625 bits (1612), Expect = e-176, Method: Compositional matrix adjust.
Identities = 297/334 (88%), Positives = 313/334 (93%), Gaps = 1/334 (0%)
Query: 4 GTHYAVMSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILG 63
GTHYAVMSSY+Y+S GLR Y LDN +DG YIAPAFMDKLVVHI+KNFM+LPNIKVPLILG
Sbjct: 97 GTHYAVMSSYEYLSTGLRQY-LDNKMDGFYIAPAFMDKLVVHISKNFMTLPNIKVPLILG 155
Query: 64 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 123
IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAD+IKKGKM
Sbjct: 156 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADMIKKGKM 215
Query: 124 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 183
C L INDLDAGAGR+GGTTQYTVNNQMVNATLMNIADNPT VQLPGMYNKEENPRVPIIV
Sbjct: 216 CALFINDLDAGAGRLGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRVPIIV 275
Query: 184 TGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSI 243
TGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVC GIFR D + + DIVKLVDTFPGQSI
Sbjct: 276 TGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCTGIFRTDGIPEQDIVKLVDTFPGQSI 335
Query: 244 DFFGALRARVYDDEVRKWISGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQ 303
DFFGALRARVYDDEVRKWISGVGV S+GK LVNSK+ PTFEQP+MT+EKLL YGNM+VQ
Sbjct: 336 DFFGALRARVYDDEVRKWISGVGVDSVGKKLVNSKDGPPTFEQPKMTLEKLLLYGNMLVQ 395
Query: 304 EQENVKRVQLADKYLSEAALGEANEDAIQSGNFY 337
EQENVKRVQLADKYL+EAALG ANEDAIQ G F+
Sbjct: 396 EQENVKRVQLADKYLNEAALGNANEDAIQRGTFF 429
>gi|449459892|ref|XP_004147680.1| PREDICTED: ribulose bisphosphate carboxylase/oxygenase activase 1,
chloroplastic-like [Cucumis sativus]
Length = 443
Score = 624 bits (1610), Expect = e-176, Method: Compositional matrix adjust.
Identities = 297/337 (88%), Positives = 314/337 (93%), Gaps = 1/337 (0%)
Query: 1 MGTGTHYAVMSSYDYISQGLRTYN-LDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVP 59
M GTHYAVMSSY+Y+SQG ++Y+ +DN + GLYIAPAFMDKLVVHITKNF+SLPNIKVP
Sbjct: 107 MQAGTHYAVMSSYEYLSQGRKSYDGMDNVLGGLYIAPAFMDKLVVHITKNFLSLPNIKVP 166
Query: 60 LILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIK 119
LILG+WGGKGQGKSFQCELVFAKMGI PIMMSAGELESGNAGEPAKLIRQRYREAADIIK
Sbjct: 167 LILGLWGGKGQGKSFQCELVFAKMGITPIMMSAGELESGNAGEPAKLIRQRYREAADIIK 226
Query: 120 KGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRV 179
KGKM CL INDLDAGAGR+GGTTQYTVNNQMVNATLMNIADNPT VQLPGMYNKEENPRV
Sbjct: 227 KGKMSCLFINDLDAGAGRLGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRV 286
Query: 180 PIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFP 239
PIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFR DNVADDDIVKLVDTFP
Sbjct: 287 PIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRTDNVADDDIVKLVDTFP 346
Query: 240 GQSIDFFGALRARVYDDEVRKWISGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGN 299
GQSIDFFGALRARVYDDEVRKW++GVGV SIGK LVNSKE P FEQP M++EKLLEYG
Sbjct: 347 GQSIDFFGALRARVYDDEVRKWVTGVGVQSIGKKLVNSKEPPPKFEQPTMSLEKLLEYGG 406
Query: 300 MIVQEQENVKRVQLADKYLSEAALGEANEDAIQSGNF 336
M+VQEQENVKRVQLA+ YL+EAALG ANEDAI G F
Sbjct: 407 MLVQEQENVKRVQLAETYLNEAALGNANEDAITRGAF 443
>gi|108864713|gb|ABG22614.1| Ribulose bisphosphate carboxylase/oxygenase activase, chloroplast
precursor, putative, expressed [Oryza sativa Japonica
Group]
Length = 428
Score = 624 bits (1608), Expect = e-176, Method: Compositional matrix adjust.
Identities = 291/337 (86%), Positives = 319/337 (94%)
Query: 2 GTGTHYAVMSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLI 61
G GTH AV+SSY+Y+SQGLRTY+ DNT+ G YIAPAFMDKLVVHI+KNFM+LPNIKVPLI
Sbjct: 92 GDGTHEAVLSSYEYLSQGLRTYDFDNTMGGFYIAPAFMDKLVVHISKNFMTLPNIKVPLI 151
Query: 62 LGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKG 121
LGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKG
Sbjct: 152 LGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKG 211
Query: 122 KMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPI 181
KMCCL INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPT VQLPGMYNKE+NPRVPI
Sbjct: 212 KMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEDNPRVPI 271
Query: 182 IVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQ 241
IVTGNDFSTLYAPLIRDGRMEKFYWAPTR+DR+GVCKGIFR DNV D+DIVK+VD+FPGQ
Sbjct: 272 IVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRVGVCKGIFRTDNVPDEDIVKIVDSFPGQ 331
Query: 242 SIDFFGALRARVYDDEVRKWISGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMI 301
SIDFFGALRARVYDDEVRKW+S GV +IGK LVNS+E P FEQP+MT+EKL+EYG M+
Sbjct: 332 SIDFFGALRARVYDDEVRKWVSDTGVENIGKRLVNSREGPPEFEQPKMTIEKLMEYGYML 391
Query: 302 VQEQENVKRVQLADKYLSEAALGEANEDAIQSGNFYG 338
V+EQENVKRVQLA++YLSEAALG+AN DA+++G+FYG
Sbjct: 392 VKEQENVKRVQLAEQYLSEAALGDANSDAMKTGSFYG 428
>gi|383470439|gb|AFH35543.1| chloroplast ribulose-1,5-bisphosphate carboxylase/oxygenase
activase [Brassica oleracea]
Length = 438
Score = 624 bits (1608), Expect = e-176, Method: Compositional matrix adjust.
Identities = 295/338 (87%), Positives = 314/338 (92%)
Query: 1 MGTGTHYAVMSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPL 60
MGTGTH AV+SSY+YISQGL+ YNLDN +DGL+IAPAFMDKLVVHITKNF++LPNIKVPL
Sbjct: 101 MGTGTHNAVLSSYEYISQGLKQYNLDNMMDGLFIAPAFMDKLVVHITKNFLTLPNIKVPL 160
Query: 61 ILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKK 120
ILGIWGGKGQGKSFQCELV AKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAD+IKK
Sbjct: 161 ILGIWGGKGQGKSFQCELVMAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADMIKK 220
Query: 121 GKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVP 180
GKMCCL INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPT VQLPGMYNKEEN RVP
Sbjct: 221 GKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENARVP 280
Query: 181 IIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPG 240
IIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFR DNV D+DIV LVD FPG
Sbjct: 281 IIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRTDNVKDEDIVTLVDQFPG 340
Query: 241 QSIDFFGALRARVYDDEVRKWISGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNM 300
QSIDFFGALRARVYDDEVRK++ G+GV IGK LVNS+E P FEQP MT+EKL+EYGNM
Sbjct: 341 QSIDFFGALRARVYDDEVRKFVEGLGVEKIGKRLVNSREGPPVFEQPAMTLEKLMEYGNM 400
Query: 301 IVQEQENVKRVQLADKYLSEAALGEANEDAIQSGNFYG 338
+V EQENVKRVQLAD+YL+EAALG+AN DAI G FYG
Sbjct: 401 LVMEQENVKRVQLADQYLNEAALGDANADAIGRGTFYG 438
>gi|118489408|gb|ABK96507.1| unknown [Populus trichocarpa x Populus deltoides]
Length = 461
Score = 624 bits (1608), Expect = e-176, Method: Compositional matrix adjust.
Identities = 297/333 (89%), Positives = 316/333 (94%), Gaps = 1/333 (0%)
Query: 2 GTGTHYAVMSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLI 61
GTGTH V+SSY+Y+SQGLRTYNLDN +DG YIAPAFMDK+VVHI+KNFMSLPNIKVPLI
Sbjct: 103 GTGTHNPVLSSYEYLSQGLRTYNLDNMMDGYYIAPAFMDKIVVHISKNFMSLPNIKVPLI 162
Query: 62 LGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKK- 120
LGIWGGKGQGKSFQCELVFAKMGI+PIMMSAGELESGNAGEPAKLIRQRYREAADIIKK
Sbjct: 163 LGIWGGKGQGKSFQCELVFAKMGISPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKK 222
Query: 121 GKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVP 180
GKMCCL INDLDAGAGR+GGTTQYTVNNQMVNATLMNIADNPT VQLPGMYNKE+NPRVP
Sbjct: 223 GKMCCLFINDLDAGAGRLGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEDNPRVP 282
Query: 181 IIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPG 240
IIVTGNDFSTLYAPLIRDGRMEKFYWAPTR+DRIGVC GIF+ DNV DDIVKLVDTFPG
Sbjct: 283 IIVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRIGVCIGIFKTDNVPQDDIVKLVDTFPG 342
Query: 241 QSIDFFGALRARVYDDEVRKWISGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNM 300
QSIDFFGALRARVYDDEVRKW+SGVGV SIGK LVNS+E PTFEQP MT+EKL EYGNM
Sbjct: 343 QSIDFFGALRARVYDDEVRKWVSGVGVESIGKKLVNSREGPPTFEQPAMTVEKLFEYGNM 402
Query: 301 IVQEQENVKRVQLADKYLSEAALGEANEDAIQS 333
+V+EQENVKRVQLADKYLS+AALGEAN+DAI+S
Sbjct: 403 LVKEQENVKRVQLADKYLSDAALGEANQDAIES 435
>gi|312281705|dbj|BAJ33718.1| unnamed protein product [Thellungiella halophila]
Length = 437
Score = 623 bits (1606), Expect = e-176, Method: Compositional matrix adjust.
Identities = 293/338 (86%), Positives = 313/338 (92%)
Query: 1 MGTGTHYAVMSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPL 60
MGTGTH+AV+SSY+YISQGLR YNLDN +DG YIAPAFMDKLVVHITKNF++LPNIKVPL
Sbjct: 100 MGTGTHHAVLSSYEYISQGLRQYNLDNMMDGFYIAPAFMDKLVVHITKNFLTLPNIKVPL 159
Query: 61 ILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKK 120
ILGIWGGKGQGKSFQCELV AKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAD+IKK
Sbjct: 160 ILGIWGGKGQGKSFQCELVMAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADMIKK 219
Query: 121 GKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVP 180
GKMCCL INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPT VQLPGMYNKE+N RVP
Sbjct: 220 GKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEDNARVP 279
Query: 181 IIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPG 240
IIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFR D + D+DIV LVD FPG
Sbjct: 280 IIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRTDKINDEDIVTLVDQFPG 339
Query: 241 QSIDFFGALRARVYDDEVRKWISGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNM 300
QSIDFFGALRARVYDDEVRK++ G+GV IGK LVNS+E P FEQP MT+EKL+EYGNM
Sbjct: 340 QSIDFFGALRARVYDDEVRKFVEGLGVEKIGKRLVNSREGPPVFEQPEMTLEKLMEYGNM 399
Query: 301 IVQEQENVKRVQLADKYLSEAALGEANEDAIQSGNFYG 338
+V EQENVKRVQLAD+YL+EAALG+AN DAI G FYG
Sbjct: 400 LVMEQENVKRVQLADQYLNEAALGDANADAIDRGTFYG 437
>gi|449503259|ref|XP_004161913.1| PREDICTED: LOW QUALITY PROTEIN: ribulose bisphosphate
carboxylase/oxygenase activase 1, chloroplastic-like
[Cucumis sativus]
Length = 443
Score = 622 bits (1603), Expect = e-175, Method: Compositional matrix adjust.
Identities = 296/337 (87%), Positives = 313/337 (92%), Gaps = 1/337 (0%)
Query: 1 MGTGTHYAVMSSYDYISQGLRTYN-LDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVP 59
M GTHYAVMSSY+Y+SQG ++Y+ +DN + GLYIAPAFMDKLVVHITKNF+SLPNIKVP
Sbjct: 107 MQAGTHYAVMSSYEYLSQGRKSYDGMDNVLGGLYIAPAFMDKLVVHITKNFLSLPNIKVP 166
Query: 60 LILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIK 119
LILG+WGGKGQGKSFQCELVFAKMGI PIMMSAGELESGNAGEPAKLIRQRYREAADIIK
Sbjct: 167 LILGLWGGKGQGKSFQCELVFAKMGITPIMMSAGELESGNAGEPAKLIRQRYREAADIIK 226
Query: 120 KGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRV 179
KGKM CL INDLDAGAGR+GGTTQYTVNNQMVNATLMNIADNPT VQLPGMYNKEENPRV
Sbjct: 227 KGKMSCLFINDLDAGAGRLGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRV 286
Query: 180 PIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFP 239
PIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFR DNVADDDIVKLVDTFP
Sbjct: 287 PIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRTDNVADDDIVKLVDTFP 346
Query: 240 GQSIDFFGALRARVYDDEVRKWISGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGN 299
GQSIDFFGALRARVYDDEVRKW++GVGV SIGK LVNSKE P FEQP M++ KLLEYG
Sbjct: 347 GQSIDFFGALRARVYDDEVRKWVTGVGVQSIGKKLVNSKEPPPKFEQPTMSLXKLLEYGG 406
Query: 300 MIVQEQENVKRVQLADKYLSEAALGEANEDAIQSGNF 336
M+VQEQENVKRVQLA+ YL+EAALG ANEDAI G F
Sbjct: 407 MLVQEQENVKRVQLAETYLNEAALGNANEDAITRGAF 443
>gi|62733297|gb|AAX95414.1| RuBisCO activase small isoform precursor [Oryza sativa Japonica
Group]
Length = 466
Score = 621 bits (1602), Expect = e-175, Method: Compositional matrix adjust.
Identities = 291/337 (86%), Positives = 319/337 (94%)
Query: 2 GTGTHYAVMSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLI 61
G GTH AV+SSY+Y+SQGLRTY+ DNT+ G YIAPAFMDKLVVHI+KNFM+LPNIKVPLI
Sbjct: 130 GDGTHEAVLSSYEYLSQGLRTYDFDNTMGGFYIAPAFMDKLVVHISKNFMTLPNIKVPLI 189
Query: 62 LGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKG 121
LGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKG
Sbjct: 190 LGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKG 249
Query: 122 KMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPI 181
KMCCL INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPT VQLPGMYNKE+NPRVPI
Sbjct: 250 KMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEDNPRVPI 309
Query: 182 IVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQ 241
IVTGNDFSTLYAPLIRDGRMEKFYWAPTR+DR+GVCKGIFR DNV D+DIVK+VD+FPGQ
Sbjct: 310 IVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRVGVCKGIFRTDNVPDEDIVKIVDSFPGQ 369
Query: 242 SIDFFGALRARVYDDEVRKWISGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMI 301
SIDFFGALRARVYDDEVRKW+S GV +IGK LVNS+E P FEQP+MT+EKL+EYG M+
Sbjct: 370 SIDFFGALRARVYDDEVRKWVSDTGVENIGKRLVNSREGPPEFEQPKMTIEKLMEYGYML 429
Query: 302 VQEQENVKRVQLADKYLSEAALGEANEDAIQSGNFYG 338
V+EQENVKRVQLA++YLSEAALG+AN DA+++G+FYG
Sbjct: 430 VKEQENVKRVQLAEQYLSEAALGDANSDAMKTGSFYG 466
>gi|358249078|ref|NP_001240245.1| ribulose bisphosphate carboxylase/oxygenase activase,
chloroplastic-like [Glycine max]
gi|290766485|gb|ADD60245.1| rubisco activase [Glycine max]
Length = 443
Score = 621 bits (1602), Expect = e-175, Method: Compositional matrix adjust.
Identities = 294/334 (88%), Positives = 312/334 (93%), Gaps = 1/334 (0%)
Query: 4 GTHYAVMSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILG 63
GTHYAVMSSY+Y+S GLR Y LDN +DG YIAPAFMDKLVVHITKNFM+LPNIKVPLILG
Sbjct: 109 GTHYAVMSSYEYLSTGLRQY-LDNNMDGFYIAPAFMDKLVVHITKNFMTLPNIKVPLILG 167
Query: 64 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 123
IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAD+IKKGKM
Sbjct: 168 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADLIKKGKM 227
Query: 124 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 183
C L INDLDAGAGR+GGTTQYTVNNQMVNATLMNIADNPT VQLPGMYNKEENPRVPIIV
Sbjct: 228 CALFINDLDAGAGRLGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRVPIIV 287
Query: 184 TGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSI 243
TGNDFSTLYAPLIRDGRMEKFYWAPTR+DRIGVC GIFR D++ + D+VK+VDTFPGQSI
Sbjct: 288 TGNDFSTLYAPLIRDGRMEKFYWAPTRDDRIGVCTGIFRTDSIPEQDVVKIVDTFPGQSI 347
Query: 244 DFFGALRARVYDDEVRKWISGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQ 303
DFFGALRARVYDDEVRKWISGVGV IGK LVNSK+ PTFEQP+MT+EKLL YGNM+VQ
Sbjct: 348 DFFGALRARVYDDEVRKWISGVGVDGIGKKLVNSKDGPPTFEQPKMTLEKLLTYGNMLVQ 407
Query: 304 EQENVKRVQLADKYLSEAALGEANEDAIQSGNFY 337
EQENVKRVQLADKYL+EAALG ANEDAI G F+
Sbjct: 408 EQENVKRVQLADKYLNEAALGNANEDAINRGTFF 441
>gi|449450762|ref|XP_004143131.1| PREDICTED: ribulose bisphosphate carboxylase/oxygenase activase,
chloroplastic-like [Cucumis sativus]
gi|449496654|ref|XP_004160190.1| PREDICTED: ribulose bisphosphate carboxylase/oxygenase activase,
chloroplastic-like [Cucumis sativus]
gi|239837354|gb|ACS29559.1| chloroplast rubisco activase [Cucumis sativus]
Length = 611
Score = 621 bits (1602), Expect = e-175, Method: Compositional matrix adjust.
Identities = 288/332 (86%), Positives = 310/332 (93%)
Query: 1 MGTGTHYAVMSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPL 60
MGTGTH AV+SSY+YIS GLR Y+ DN +DG YIAPAFMDKL VHI KNF++LPNIKVPL
Sbjct: 97 MGTGTHNAVLSSYEYISAGLRDYSYDNNVDGFYIAPAFMDKLTVHIVKNFLTLPNIKVPL 156
Query: 61 ILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKK 120
ILG+WGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKK
Sbjct: 157 ILGVWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKK 216
Query: 121 GKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVP 180
GKMCCL INDLDAGAGR+GGTTQYTVNNQMVNATLMNIADNPT VQLPGMYNKEENPRVP
Sbjct: 217 GKMCCLFINDLDAGAGRLGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRVP 276
Query: 181 IIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPG 240
IIVTGNDFSTLYAPLIRDGRM+KFYWAPTREDRIG+C GIFR D V +DIVKLVDTFPG
Sbjct: 277 IIVTGNDFSTLYAPLIRDGRMDKFYWAPTREDRIGICTGIFRTDGVPFEDIVKLVDTFPG 336
Query: 241 QSIDFFGALRARVYDDEVRKWISGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNM 300
QSIDFFGALRARVYDDEVRKW GVGV IG++LVNSKE+ PTF+QP+MT+EKLLEYGNM
Sbjct: 337 QSIDFFGALRARVYDDEVRKWAVGVGVERIGRNLVNSKESPPTFDQPKMTIEKLLEYGNM 396
Query: 301 IVQEQENVKRVQLADKYLSEAALGEANEDAIQ 332
+V EQENVKRV+LADKYL+EAALG+ANED +Q
Sbjct: 397 LVMEQENVKRVKLADKYLNEAALGDANEDDVQ 428
>gi|10720253|sp|Q42450.1|RCAB_HORVU RecName: Full=Ribulose bisphosphate carboxylase/oxygenase activase
B, chloroplastic; Short=RA B; Short=RuBisCO activase B;
Flags: Precursor
gi|167093|gb|AAA62703.1| ribulose 1,5-bisphosphate carboxylase activase [Hordeum vulgare]
gi|167095|gb|AAA63162.1| ribulose 1,5-bisphosphate carboxylase activase [Hordeum vulgare
subsp. vulgare]
Length = 425
Score = 621 bits (1601), Expect = e-175, Method: Compositional matrix adjust.
Identities = 292/339 (86%), Positives = 318/339 (93%), Gaps = 1/339 (0%)
Query: 1 MGTGTHYAVMSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPL 60
MG GTH A++SSY+YISQGLR Y+ DNT+DGLYIAPAFMDKL+VH+ KNFM+LPNIKVPL
Sbjct: 88 MGDGTHEAILSSYEYISQGLRKYDFDNTMDGLYIAPAFMDKLIVHLAKNFMTLPNIKVPL 147
Query: 61 ILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKK 120
ILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGN GEPAKLIRQRYREAADII K
Sbjct: 148 ILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGN-GEPAKLIRQRYREAADIINK 206
Query: 121 GKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVP 180
GKMCCL INDLDAGAGRMGGTTQYTVNNQMVNATLMNIAD PT VQLPGMYNKEENPRVP
Sbjct: 207 GKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADAPTNVQLPGMYNKEENPRVP 266
Query: 181 IIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPG 240
IIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFR DNV D+ +V+LVDTFPG
Sbjct: 267 IIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRTDNVPDEAVVRLVDTFPG 326
Query: 241 QSIDFFGALRARVYDDEVRKWISGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNM 300
QSIDFFGALRARVYDDEVRKW+ +GV +I K LVNS+E PTF+QP+MT+EKL+EYG+M
Sbjct: 327 QSIDFFGALRARVYDDEVRKWVGEIGVENISKRLVNSREGPPTFDQPKMTIEKLMEYGHM 386
Query: 301 IVQEQENVKRVQLADKYLSEAALGEANEDAIQSGNFYGK 339
+VQEQENVKRVQLADKYLSEAALG+AN+DA+++G FYGK
Sbjct: 387 LVQEQENVKRVQLADKYLSEAALGQANDDAMKTGAFYGK 425
>gi|13430334|gb|AAK25799.1|AF338238_1 rubisco activase [Zantedeschia aethiopica]
Length = 334
Score = 620 bits (1599), Expect = e-175, Method: Compositional matrix adjust.
Identities = 290/334 (86%), Positives = 318/334 (95%)
Query: 5 THYAVMSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGI 64
TH V+SSY+YIS GLR++NLDNT++GLYIAPAFMDKLVVHITKNFM+LPNIK+PLILGI
Sbjct: 1 THNPVLSSYEYISTGLRSFNLDNTVNGLYIAPAFMDKLVVHITKNFMNLPNIKIPLILGI 60
Query: 65 WGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMC 124
WGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADII+KGKMC
Sbjct: 61 WGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIRKGKMC 120
Query: 125 CLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVT 184
CL INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPT VQLPGMYNK+ENPRVPIIVT
Sbjct: 121 CLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENPRVPIIVT 180
Query: 185 GNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSID 244
GNDFSTLYAPLIRDGRMEKFYWAPTR+DR+GVC GIFR+DNV +D++KLVDTFPGQSID
Sbjct: 181 GNDFSTLYAPLIRDGRMEKFYWAPTRDDRVGVCTGIFRSDNVPKEDVIKLVDTFPGQSID 240
Query: 245 FFGALRARVYDDEVRKWISGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQE 304
FFGALRARVYDDEVRKWI+ +GV +GK LVNS E PTF QP+MT++KLLEYGNM+VQE
Sbjct: 241 FFGALRARVYDDEVRKWIAEIGVDGVGKRLVNSLEGPPTFAQPKMTLDKLLEYGNMLVQE 300
Query: 305 QENVKRVQLADKYLSEAALGEANEDAIQSGNFYG 338
QENVKRVQLADKYLSEAALG+AN+DAI++G+FYG
Sbjct: 301 QENVKRVQLADKYLSEAALGDANQDAIKTGSFYG 334
>gi|30687995|ref|NP_850320.1| ribulose bisphosphate carboxylase/oxygenase activase [Arabidopsis
thaliana]
gi|166835|gb|AAA20203.1| ribulose bisphosphate carboxylase/oxygenase activase [Arabidopsis
thaliana]
gi|15450671|gb|AAK96607.1| At2g39730/T5I7.3 [Arabidopsis thaliana]
gi|23397139|gb|AAN31853.1| unknown protein [Arabidopsis thaliana]
gi|330254621|gb|AEC09715.1| ribulose bisphosphate carboxylase/oxygenase activase [Arabidopsis
thaliana]
Length = 446
Score = 619 bits (1597), Expect = e-175, Method: Compositional matrix adjust.
Identities = 291/343 (84%), Positives = 312/343 (90%)
Query: 1 MGTGTHYAVMSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPL 60
MGTGTH+AV+SSY+Y+SQGLR YNLDN +DG YIAPAFMDKLVVHITKNF++LPNIKVPL
Sbjct: 100 MGTGTHHAVLSSYEYVSQGLRQYNLDNMMDGFYIAPAFMDKLVVHITKNFLTLPNIKVPL 159
Query: 61 ILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKK 120
ILGIWGGKGQGKSFQCELV AKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAD+IKK
Sbjct: 160 ILGIWGGKGQGKSFQCELVMAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADLIKK 219
Query: 121 GKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVP 180
GKMCCL INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPT VQLPGMYNKEEN RVP
Sbjct: 220 GKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENARVP 279
Query: 181 IIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPG 240
II TGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFR D + D+DIV LVD FPG
Sbjct: 280 IICTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRTDKIKDEDIVTLVDQFPG 339
Query: 241 QSIDFFGALRARVYDDEVRKWISGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNM 300
QSIDFFGALRARVYDDEVRK++ +GV IGK LVNS+E P FEQP MT EKL+EYGNM
Sbjct: 340 QSIDFFGALRARVYDDEVRKFVESLGVEKIGKRLVNSREGPPVFEQPEMTYEKLMEYGNM 399
Query: 301 IVQEQENVKRVQLADKYLSEAALGEANEDAIQSGNFYGKAAQQ 343
+V EQENVKRVQLA+ YLS+AALG+AN DAI G FYGK ++
Sbjct: 400 LVMEQENVKRVQLAETYLSQAALGDANADAIGRGTFYGKTEEK 442
>gi|224140291|ref|XP_002323516.1| predicted protein [Populus trichocarpa]
gi|222868146|gb|EEF05277.1| predicted protein [Populus trichocarpa]
Length = 476
Score = 619 bits (1596), Expect = e-175, Method: Compositional matrix adjust.
Identities = 305/385 (79%), Positives = 329/385 (85%), Gaps = 26/385 (6%)
Query: 1 MGTGTHYAVMSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPL 60
MGTGTHYAVMSSYDY S+GLR Y LDN +DG YIA +FMDKLVVHITKNF+ LPNIK
Sbjct: 101 MGTGTHYAVMSSYDYTSKGLRQYKLDNNMDGFYIASSFMDKLVVHITKNFLQLPNIK--- 157
Query: 61 ILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKK 120
KGQGKSFQCELVFAKMGINP++MSAGELESGNAGEPAKLIRQRYREAADIIKK
Sbjct: 158 -----ASKGQGKSFQCELVFAKMGINPVVMSAGELESGNAGEPAKLIRQRYREAADIIKK 212
Query: 121 -GKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRV 179
GKMCCL INDLDAGAGR GGTTQYTVNNQMVNATLMNIADNPT VQLPGMYNKEENPRV
Sbjct: 213 RGKMCCLFINDLDAGAGRFGGTTQYTVNNQMVNATLMNIADNPTSVQLPGMYNKEENPRV 272
Query: 180 PIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFP 239
PIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVC GIF +DNV +DIVKLV+TF
Sbjct: 273 PIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCTGIFGSDNVPREDIVKLVNTFH 332
Query: 240 GQSIDFFGALRARVYDDEVRKWISGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGN 299
GQSIDFFGALRAR YDDEVRKWISGVGV ++GK LVNSKE P EQP+MT+EKLLEYGN
Sbjct: 333 GQSIDFFGALRARAYDDEVRKWISGVGVENVGKRLVNSKEGPPILEQPKMTLEKLLEYGN 392
Query: 300 MIVQEQENVKRVQLADKYLSEAALGEANEDAIQSGNFY-------------GKAAQQMNV 346
M+V EQENVKRV+L+DKYL EAALG+ANEDA+++G+FY KAAQQ+N+
Sbjct: 393 MLVLEQENVKRVRLSDKYLKEAALGDANEDAMKNGSFYEEIIKLLYNFLDTSKAAQQVNL 452
Query: 347 PVPEGCTDPTAENFDPTARSDDGSC 371
PVPE CT+ AE TARSDDGSC
Sbjct: 453 PVPEDCTNSLAE----TARSDDGSC 473
>gi|158726716|gb|ABW80752.1| chloroplast ribulose 1,5-bisphosphate carboxylase/oxygenase
activase [Flaveria bidentis]
Length = 438
Score = 619 bits (1595), Expect = e-174, Method: Compositional matrix adjust.
Identities = 293/336 (87%), Positives = 313/336 (93%), Gaps = 1/336 (0%)
Query: 3 TGTHYAVMSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLIL 62
+GTH+AVMSSY+YIS GLRTY LDN +DG YIAPAFMDKLVVHITKNFM+LPNIKVPLIL
Sbjct: 101 SGTHFAVMSSYEYISTGLRTY-LDNNMDGFYIAPAFMDKLVVHITKNFMTLPNIKVPLIL 159
Query: 63 GIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGK 122
G+WGGKGQGKSFQCELVFAKMGI PIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGK
Sbjct: 160 GVWGGKGQGKSFQCELVFAKMGITPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGK 219
Query: 123 MCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPII 182
MCCL INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPT VQLPGMYNKEENPRVPII
Sbjct: 220 MCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRVPII 279
Query: 183 VTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQS 242
VTGNDFSTLYAPLIRDGRMEKFYWAPTR+DRIGVC GIFR DNV +DIVKLVDTFPGQS
Sbjct: 280 VTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRIGVCIGIFRTDNVPKEDIVKLVDTFPGQS 339
Query: 243 IDFFGALRARVYDDEVRKWISGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIV 302
IDFFGALRARVYDDEVRKWI VGV +IGK LVNS+E PTFEQP+MT++KLLEYG M+V
Sbjct: 340 IDFFGALRARVYDDEVRKWIGEVGVETIGKKLVNSREGPPTFEQPKMTIDKLLEYGYMLV 399
Query: 303 QEQENVKRVQLADKYLSEAALGEANEDAIQSGNFYG 338
QEQENVKRVQLAD YL AALG+AN+DA+++G F+
Sbjct: 400 QEQENVKRVQLADTYLDSAALGDANKDAMETGKFFA 435
>gi|30687999|ref|NP_850321.1| ribulose bisphosphate carboxylase/oxygenase activase [Arabidopsis
thaliana]
gi|330254622|gb|AEC09716.1| ribulose bisphosphate carboxylase/oxygenase activase [Arabidopsis
thaliana]
Length = 441
Score = 618 bits (1593), Expect = e-174, Method: Compositional matrix adjust.
Identities = 291/339 (85%), Positives = 310/339 (91%)
Query: 1 MGTGTHYAVMSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPL 60
MGTGTH+AV+SSY+Y+SQGLR YNLDN +DG YIAPAFMDKLVVHITKNF++LPNIKVPL
Sbjct: 100 MGTGTHHAVLSSYEYVSQGLRQYNLDNMMDGFYIAPAFMDKLVVHITKNFLTLPNIKVPL 159
Query: 61 ILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKK 120
ILGIWGGKGQGKSFQCELV AKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAD+IKK
Sbjct: 160 ILGIWGGKGQGKSFQCELVMAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADLIKK 219
Query: 121 GKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVP 180
GKMCCL INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPT VQLPGMYNKEEN RVP
Sbjct: 220 GKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENARVP 279
Query: 181 IIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPG 240
II TGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFR D + D+DIV LVD FPG
Sbjct: 280 IICTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRTDKIKDEDIVTLVDQFPG 339
Query: 241 QSIDFFGALRARVYDDEVRKWISGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNM 300
QSIDFFGALRARVYDDEVRK++ +GV IGK LVNS+E P FEQP MT EKL+EYGNM
Sbjct: 340 QSIDFFGALRARVYDDEVRKFVESLGVEKIGKRLVNSREGPPVFEQPEMTYEKLMEYGNM 399
Query: 301 IVQEQENVKRVQLADKYLSEAALGEANEDAIQSGNFYGK 339
+V EQENVKRVQLA+ YLS+AALG+AN DAI G FYGK
Sbjct: 400 LVMEQENVKRVQLAETYLSQAALGDANADAIGRGTFYGK 438
>gi|1778414|gb|AAC28134.1| ribulose-1,5-bisphosphate carboxylase/oxygenase activase [Oryza
sativa Japonica Group]
Length = 432
Score = 618 bits (1593), Expect = e-174, Method: Compositional matrix adjust.
Identities = 290/339 (85%), Positives = 319/339 (94%), Gaps = 1/339 (0%)
Query: 2 GTGTHYAVMSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLI 61
G GTH AV+SSY+Y+SQGLRTY+ DNT+ G YIAP+FMDKLVVHI+KNFM+LPNIKVPLI
Sbjct: 92 GDGTHEAVLSSYEYLSQGLRTYDFDNTMGGFYIAPSFMDKLVVHISKNFMTLPNIKVPLI 151
Query: 62 LGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKG 121
LGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGN GEPAKLIRQRYREAADIIKKG
Sbjct: 152 LGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGN-GEPAKLIRQRYREAADIIKKG 210
Query: 122 KMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPI 181
KMCCL INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPT VQLPGMYNKE+NPRVPI
Sbjct: 211 KMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEDNPRVPI 270
Query: 182 IVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQ 241
IVTGNDFSTLYAPLIRDGRMEKFYWAPTR+DR+GVCKGIFR DNV D+DIVK+VD+FPGQ
Sbjct: 271 IVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRVGVCKGIFRTDNVPDEDIVKIVDSFPGQ 330
Query: 242 SIDFFGALRARVYDDEVRKWISGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMI 301
SIDFFGALRARVYDDEVRKW+S GV +IGK LVNS+E P FEQP+MT+EKL+EYG M+
Sbjct: 331 SIDFFGALRARVYDDEVRKWVSDTGVENIGKRLVNSREGPPEFEQPKMTIEKLIEYGYML 390
Query: 302 VQEQENVKRVQLADKYLSEAALGEANEDAIQSGNFYGKA 340
V+EQENVKRVQLA++YLSEAALG+AN DA+++G+FYG A
Sbjct: 391 VKEQENVKRVQLAEQYLSEAALGDANSDAMKTGSFYGSA 429
>gi|12643757|sp|Q40460.1|RCA1_TOBAC RecName: Full=Ribulose bisphosphate carboxylase/oxygenase activase
1, chloroplastic; Short=RA 1; Short=RuBisCO activase 1;
Flags: Precursor
gi|1006835|gb|AAA78277.1| rubisco activase precursor [Nicotiana tabacum]
Length = 442
Score = 616 bits (1589), Expect = e-174, Method: Compositional matrix adjust.
Identities = 287/336 (85%), Positives = 310/336 (92%)
Query: 2 GTGTHYAVMSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLI 61
GTGTH+AV+ SY+Y+SQGLR YNLDN +DG YIAPAFMDKLVVHITKNF+ LPNIKVPLI
Sbjct: 105 GTGTHHAVLQSYEYVSQGLRQYNLDNKLDGFYIAPAFMDKLVVHITKNFLKLPNIKVPLI 164
Query: 62 LGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKG 121
LGIWGGKGQGKSFQCELVF KMGINPIMMSAGELESGNAGEPAKLIRQRYREAA+II+KG
Sbjct: 165 LGIWGGKGQGKSFQCELVFRKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKG 224
Query: 122 KMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPI 181
MCCL INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPT VQLPGMYNK+EN RVPI
Sbjct: 225 NMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPI 284
Query: 182 IVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQ 241
IVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVC GIFR DNV +D+VK+VD FPGQ
Sbjct: 285 IVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCTGIFRTDNVPAEDVVKIVDNFPGQ 344
Query: 242 SIDFFGALRARVYDDEVRKWISGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMI 301
SIDFFGALRARVYDDEVRKW+SG G+ IG L+NS + PTFEQP+MT+EKLLEYGNM+
Sbjct: 345 SIDFFGALRARVYDDEVRKWVSGTGIEKIGDKLLNSFDGPPTFEQPKMTIEKLLEYGNML 404
Query: 302 VQEQENVKRVQLADKYLSEAALGEANEDAIQSGNFY 337
VQEQENVKRVQLADKYL EAALG+AN DAI +G+F+
Sbjct: 405 VQEQENVKRVQLADKYLKEAALGDANADAINNGSFF 440
>gi|10720249|sp|O98997.2|RCA_PHAAU RecName: Full=Ribulose bisphosphate carboxylase/oxygenase activase,
chloroplastic; Short=RA; Short=RuBisCO activase; Flags:
Precursor
gi|8954287|gb|AAD20019.2| rubisco activase [Vigna radiata]
Length = 439
Score = 615 bits (1587), Expect = e-174, Method: Compositional matrix adjust.
Identities = 291/337 (86%), Positives = 313/337 (92%), Gaps = 2/337 (0%)
Query: 1 MGTGTHYAVMSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPL 60
M GTHYAVMSSY+Y+S GLR LDN DG YIAPAF+DKLVVHITKNFM+LPNIKVPL
Sbjct: 104 MDAGTHYAVMSSYEYLSTGLR--QLDNIKDGFYIAPAFLDKLVVHITKNFMTLPNIKVPL 161
Query: 61 ILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKK 120
ILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAD+I K
Sbjct: 162 ILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADLIAK 221
Query: 121 GKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVP 180
GKMC L INDLDAGAGR+GGTTQYTVNNQMVNATLMNIADNPT VQLPGMYNKEEN RVP
Sbjct: 222 GKMCALFINDLDAGAGRLGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENARVP 281
Query: 181 IIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPG 240
IIVTGNDFSTLYAPLIRDGRMEKFYWAPTR+DR+GVCKGIFR D V ++DI KLVDTFPG
Sbjct: 282 IIVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRVGVCKGIFRTDGVPEEDITKLVDTFPG 341
Query: 241 QSIDFFGALRARVYDDEVRKWISGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNM 300
QSIDFFGALRARVYDDEVRKWISGVGV + GK LVNSKE PTF+QP+M+++KLL+YGNM
Sbjct: 342 QSIDFFGALRARVYDDEVRKWISGVGVDATGKKLVNSKEGPPTFDQPKMSLDKLLQYGNM 401
Query: 301 IVQEQENVKRVQLADKYLSEAALGEANEDAIQSGNFY 337
+VQEQENVKRVQLADKYL+EAALG ANEDAI+SG+F+
Sbjct: 402 LVQEQENVKRVQLADKYLNEAALGNANEDAIKSGSFF 438
>gi|108864712|gb|ABG22613.1| Ribulose bisphosphate carboxylase/oxygenase activase, chloroplast
precursor, putative, expressed [Oryza sativa Japonica
Group]
Length = 348
Score = 615 bits (1586), Expect = e-173, Method: Compositional matrix adjust.
Identities = 288/333 (86%), Positives = 316/333 (94%)
Query: 8 AVMSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGG 67
AV+SSY+Y+SQGLRTY+ DNT+ G YIAPAFMDKLVVHI+KNFM+LPNIKVPLILGIWGG
Sbjct: 13 AVLSSYEYLSQGLRTYDFDNTMGGFYIAPAFMDKLVVHISKNFMTLPNIKVPLILGIWGG 72
Query: 68 KGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLM 127
KGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCL
Sbjct: 73 KGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLF 132
Query: 128 INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGND 187
INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPT VQLPGMYNKE+NPRVPIIVTGND
Sbjct: 133 INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEDNPRVPIIVTGND 192
Query: 188 FSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFG 247
FSTLYAPLIRDGRMEKFYWAPTR+DR+GVCKGIFR DNV D+DIVK+VD+FPGQSIDFFG
Sbjct: 193 FSTLYAPLIRDGRMEKFYWAPTRDDRVGVCKGIFRTDNVPDEDIVKIVDSFPGQSIDFFG 252
Query: 248 ALRARVYDDEVRKWISGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQEN 307
ALRARVYDDEVRKW+S GV +IGK LVNS+E P FEQP+MT+EKL+EYG M+V+EQEN
Sbjct: 253 ALRARVYDDEVRKWVSDTGVENIGKRLVNSREGPPEFEQPKMTIEKLMEYGYMLVKEQEN 312
Query: 308 VKRVQLADKYLSEAALGEANEDAIQSGNFYGKA 340
VKRVQLA++YLSEAALG+AN DA+++G+FYG A
Sbjct: 313 VKRVQLAEQYLSEAALGDANSDAMKTGSFYGSA 345
>gi|62733168|gb|AAX95285.1| RuBisCO activase small isoform precursor [Oryza sativa Japonica
Group]
gi|108864711|gb|ABG22612.1| Ribulose bisphosphate carboxylase/oxygenase activase, chloroplast
precursor, putative, expressed [Oryza sativa Japonica
Group]
Length = 357
Score = 615 bits (1585), Expect = e-173, Method: Compositional matrix adjust.
Identities = 288/333 (86%), Positives = 316/333 (94%)
Query: 8 AVMSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGG 67
AV+SSY+Y+SQGLRTY+ DNT+ G YIAPAFMDKLVVHI+KNFM+LPNIKVPLILGIWGG
Sbjct: 22 AVLSSYEYLSQGLRTYDFDNTMGGFYIAPAFMDKLVVHISKNFMTLPNIKVPLILGIWGG 81
Query: 68 KGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLM 127
KGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCL
Sbjct: 82 KGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLF 141
Query: 128 INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGND 187
INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPT VQLPGMYNKE+NPRVPIIVTGND
Sbjct: 142 INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEDNPRVPIIVTGND 201
Query: 188 FSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFG 247
FSTLYAPLIRDGRMEKFYWAPTR+DR+GVCKGIFR DNV D+DIVK+VD+FPGQSIDFFG
Sbjct: 202 FSTLYAPLIRDGRMEKFYWAPTRDDRVGVCKGIFRTDNVPDEDIVKIVDSFPGQSIDFFG 261
Query: 248 ALRARVYDDEVRKWISGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQEN 307
ALRARVYDDEVRKW+S GV +IGK LVNS+E P FEQP+MT+EKL+EYG M+V+EQEN
Sbjct: 262 ALRARVYDDEVRKWVSDTGVENIGKRLVNSREGPPEFEQPKMTIEKLMEYGYMLVKEQEN 321
Query: 308 VKRVQLADKYLSEAALGEANEDAIQSGNFYGKA 340
VKRVQLA++YLSEAALG+AN DA+++G+FYG A
Sbjct: 322 VKRVQLAEQYLSEAALGDANSDAMKTGSFYGSA 354
>gi|32481063|gb|AAP83928.1| Rubisco activase beta form precursor [Deschampsia antarctica]
Length = 428
Score = 614 bits (1584), Expect = e-173, Method: Compositional matrix adjust.
Identities = 284/338 (84%), Positives = 318/338 (94%)
Query: 1 MGTGTHYAVMSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPL 60
MG GTH AV+SSY+Y+SQGL+ Y+ DNT+ G YIAPAFMDKLVVH++KNFM+LPNIK+PL
Sbjct: 91 MGDGTHEAVLSSYEYVSQGLKKYDFDNTMGGFYIAPAFMDKLVVHLSKNFMTLPNIKIPL 150
Query: 61 ILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKK 120
ILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAD+IKK
Sbjct: 151 ILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADMIKK 210
Query: 121 GKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVP 180
GKMCCL INDLDAGAGRMGGTTQYTVNNQMVNATLMNIAD PT VQLPGMYNKEENPRVP
Sbjct: 211 GKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADAPTNVQLPGMYNKEENPRVP 270
Query: 181 IIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPG 240
IIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIF+ DNV+D+ +VK+VDTFPG
Sbjct: 271 IIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFQTDNVSDESVVKIVDTFPG 330
Query: 241 QSIDFFGALRARVYDDEVRKWISGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNM 300
QSIDFFGALRARVYD EVRKW+S G+ +IGK LVNS++ TFEQP+MT+EKLLEYG+M
Sbjct: 331 QSIDFFGALRARVYDVEVRKWVSSTGIENIGKRLVNSRDGPVTFEQPKMTVEKLLEYGHM 390
Query: 301 IVQEQENVKRVQLADKYLSEAALGEANEDAIQSGNFYG 338
+VQEQ+NVKRVQLAD Y+S+AALG+AN+DA+++G+FYG
Sbjct: 391 LVQEQDNVKRVQLADTYMSQAALGDANKDAMKTGSFYG 428
>gi|326494300|dbj|BAJ90419.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 427
Score = 614 bits (1583), Expect = e-173, Method: Compositional matrix adjust.
Identities = 282/337 (83%), Positives = 317/337 (94%)
Query: 2 GTGTHYAVMSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLI 61
G GTH AV+SSY+Y+SQGLR Y+ DNT+ G YIAPAFMDKLVVH++KNFM+LPNIK+PLI
Sbjct: 91 GDGTHEAVLSSYEYVSQGLRKYDFDNTMGGFYIAPAFMDKLVVHLSKNFMTLPNIKIPLI 150
Query: 62 LGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKG 121
LGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAD+IKKG
Sbjct: 151 LGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADMIKKG 210
Query: 122 KMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPI 181
KMCCL INDLDAGAGRMGGTTQYTVNNQMVNATLMNIAD PT VQLPGMYNKEENPRVPI
Sbjct: 211 KMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADAPTNVQLPGMYNKEENPRVPI 270
Query: 182 IVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQ 241
+VTGNDFSTLYAPLIRDGRMEKFYWAPTR+DRIGVCKGIF+ DNV+D+ +VK+VDTFPGQ
Sbjct: 271 VVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRIGVCKGIFQTDNVSDESVVKIVDTFPGQ 330
Query: 242 SIDFFGALRARVYDDEVRKWISGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMI 301
SIDFFGALRARVYDDEVRKW+ G+ +IGK LVNS++ TFEQP+MT+EKLLEYG+M+
Sbjct: 331 SIDFFGALRARVYDDEVRKWVGSTGIENIGKRLVNSRDGPVTFEQPKMTVEKLLEYGHML 390
Query: 302 VQEQENVKRVQLADKYLSEAALGEANEDAIQSGNFYG 338
VQEQ+NVKRVQLAD Y+S+AALG+AN+DA+++G+FYG
Sbjct: 391 VQEQDNVKRVQLADTYMSQAALGDANQDAMKTGSFYG 427
>gi|313574196|dbj|BAJ41041.1| ribulose-1,5-bisphosphate carboxylase/oxygenase activase small
isoform [Hordeum vulgare subsp. vulgare]
Length = 427
Score = 614 bits (1583), Expect = e-173, Method: Compositional matrix adjust.
Identities = 282/337 (83%), Positives = 317/337 (94%)
Query: 2 GTGTHYAVMSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLI 61
G GTH AV+SSY+Y+SQGLR Y+ DNT+ G YIAPAFMDKLVVH++KNFM+LPNIK+PLI
Sbjct: 91 GDGTHEAVLSSYEYVSQGLRKYDFDNTMGGFYIAPAFMDKLVVHLSKNFMTLPNIKIPLI 150
Query: 62 LGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKG 121
LGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAD+IKKG
Sbjct: 151 LGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADMIKKG 210
Query: 122 KMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPI 181
KMCCL INDLDAGAGRMGGTTQYTVNNQMVNATLMNIAD PT VQLPGMYNKEENPRVPI
Sbjct: 211 KMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADAPTNVQLPGMYNKEENPRVPI 270
Query: 182 IVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQ 241
+VTGNDFSTLYAPLIRDGRMEKFYWAPTR+DRIGVCKGIF+ DNV+D+ +VK+VDTFPGQ
Sbjct: 271 VVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRIGVCKGIFQTDNVSDESVVKIVDTFPGQ 330
Query: 242 SIDFFGALRARVYDDEVRKWISGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMI 301
SIDFFGALRARVYDDEVRKW+ G+ +IGK LVNS++ TFEQP+MT+EKLLEYG+M+
Sbjct: 331 SIDFFGALRARVYDDEVRKWVGSTGIENIGKRLVNSRDGPVTFEQPKMTVEKLLEYGHML 390
Query: 302 VQEQENVKRVQLADKYLSEAALGEANEDAIQSGNFYG 338
VQEQ+NVKRVQLAD Y+S+AALG+AN+DA+++G+FYG
Sbjct: 391 VQEQDNVKRVQLADTYMSQAALGDANQDAMKTGSFYG 427
>gi|12643758|sp|Q40565.1|RCA2_TOBAC RecName: Full=Ribulose bisphosphate carboxylase/oxygenase activase
2, chloroplastic; Short=RA 2; Short=RuBisCO activase 2;
Flags: Precursor
gi|19990|emb|CAA78703.1| ribulose bisphosphate carboxylase activase [Nicotiana tabacum]
Length = 439
Score = 613 bits (1582), Expect = e-173, Method: Compositional matrix adjust.
Identities = 283/335 (84%), Positives = 312/335 (93%)
Query: 2 GTGTHYAVMSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLI 61
GTGTH+AV+ SY+Y+SQGLR YN+DNT+DG YIAP+FMDKLVVHITKNF+ LPNIKVPLI
Sbjct: 105 GTGTHHAVLQSYEYVSQGLRQYNMDNTLDGFYIAPSFMDKLVVHITKNFLKLPNIKVPLI 164
Query: 62 LGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKG 121
LG+WGGKGQGKSFQCELVF KMGINPIMMSAGELESGNAGEPAKLIRQRYREAA+II+KG
Sbjct: 165 LGVWGGKGQGKSFQCELVFRKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKG 224
Query: 122 KMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPI 181
+CCL INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPT VQLPGMYNK+EN RVPI
Sbjct: 225 NICCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPI 284
Query: 182 IVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQ 241
IVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFR DNV ++ ++K+VDTFPGQ
Sbjct: 285 IVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRTDNVPEEAVIKIVDTFPGQ 344
Query: 242 SIDFFGALRARVYDDEVRKWISGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMI 301
SIDFFGALRARVYDDEVRKW+SG G+ +IG L+NS + PTFEQP+MT+EKLLEYGNM+
Sbjct: 345 SIDFFGALRARVYDDEVRKWVSGTGIEAIGDKLLNSFDGPPTFEQPKMTVEKLLEYGNML 404
Query: 302 VQEQENVKRVQLADKYLSEAALGEANEDAIQSGNF 336
VQEQENVKRVQLA+ YL EAALG+AN DAI +GNF
Sbjct: 405 VQEQENVKRVQLAETYLKEAALGDANADAINTGNF 439
>gi|116283512|gb|AAH29790.1| Unknown (protein for MGC:35458) [Homo sapiens]
Length = 427
Score = 613 bits (1582), Expect = e-173, Method: Compositional matrix adjust.
Identities = 281/337 (83%), Positives = 317/337 (94%)
Query: 2 GTGTHYAVMSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLI 61
G GTH AV+SSY+Y+SQGL+ Y+ DNT+ G YIAPAFMDKLVVH++KNFM+LPNIK+PLI
Sbjct: 91 GDGTHEAVLSSYEYVSQGLKKYDFDNTMGGFYIAPAFMDKLVVHLSKNFMTLPNIKIPLI 150
Query: 62 LGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKG 121
LGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAD+IKKG
Sbjct: 151 LGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADMIKKG 210
Query: 122 KMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPI 181
KMCCL INDLDAGAGRMGGTTQYTVNNQMVNATLMNIAD PT VQLPGMYNKEENPRVPI
Sbjct: 211 KMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADAPTNVQLPGMYNKEENPRVPI 270
Query: 182 IVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQ 241
+VTGNDFSTLYAPLIRDGRMEKFYWAPTR+DRIGVCKGIF+ DNV+D+ +VK+VDTFPGQ
Sbjct: 271 VVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRIGVCKGIFQTDNVSDESVVKIVDTFPGQ 330
Query: 242 SIDFFGALRARVYDDEVRKWISGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMI 301
SIDFFGALRARVYDDEVRKW++ G+ +IGK LVNS++ TFEQP+MT+EKLLEYG+M+
Sbjct: 331 SIDFFGALRARVYDDEVRKWVTSTGIENIGKKLVNSRDGPVTFEQPKMTVEKLLEYGHML 390
Query: 302 VQEQENVKRVQLADKYLSEAALGEANEDAIQSGNFYG 338
VQEQ+NVKRVQLAD Y+S+AALG+AN+DA+++G FYG
Sbjct: 391 VQEQDNVKRVQLADTYMSQAALGDANQDAMKTGTFYG 427
>gi|380707033|gb|AFD97617.1| rubisco activase (chloroplast) [Ammopiptanthus mongolicus]
Length = 439
Score = 613 bits (1581), Expect = e-173, Method: Compositional matrix adjust.
Identities = 291/334 (87%), Positives = 316/334 (94%)
Query: 4 GTHYAVMSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILG 63
GTHYAV+SSY+YIS GLR YNLDN +DG YIAPAFMDKLVVHITKNFM+LPNIKVPLILG
Sbjct: 105 GTHYAVLSSYEYISTGLREYNLDNNVDGFYIAPAFMDKLVVHITKNFMTLPNIKVPLILG 164
Query: 64 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 123
IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKL+R+RYREAADII+KGKM
Sbjct: 165 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLMRRRYREAADIIRKGKM 224
Query: 124 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 183
C L IN LDAGAGR+GGTTQYTVNNQMVNATLMNIADNPT VQLPGMYNKEE+PRVPIIV
Sbjct: 225 CALFINGLDAGAGRLGGTTQYTVNNQMVNATLMNIADNPTSVQLPGMYNKEESPRVPIIV 284
Query: 184 TGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSI 243
TGNDFSTLYAPLIRDGRMEKFYWAPTR+DR+GVCKGIFR DN+ +DD+VKLVDTFPGQSI
Sbjct: 285 TGNDFSTLYAPLIRDGRMEKFYWAPTRDDRVGVCKGIFRTDNITEDDVVKLVDTFPGQSI 344
Query: 244 DFFGALRARVYDDEVRKWISGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQ 303
DFFGALRARVYDDEVRKWI G+GV +GK LVNSKE PTFEQP MT++KLLEYGNM+VQ
Sbjct: 345 DFFGALRARVYDDEVRKWIGGIGVEGVGKKLVNSKEGPPTFEQPSMTLQKLLEYGNMLVQ 404
Query: 304 EQENVKRVQLADKYLSEAALGEANEDAIQSGNFY 337
EQENVKRVQLA++Y+SEAALG ANEDAI+SG+F+
Sbjct: 405 EQENVKRVQLAEQYMSEAALGNANEDAIKSGSFF 438
>gi|225580059|gb|ACN94267.1| chloroplast ribulose-1,5-bisphosphate carboxylase/oxygenase
activase [Solenostemon scutellarioides]
Length = 436
Score = 613 bits (1580), Expect = e-173, Method: Compositional matrix adjust.
Identities = 289/337 (85%), Positives = 315/337 (93%), Gaps = 1/337 (0%)
Query: 2 GTGTHYAVMSSYDYISQGLRTY-NLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPL 60
G GTH A+M+SY+YISQG +TY +LDNT+DGLYIAPAFMDKLVVH++KNFM+LPNIKVPL
Sbjct: 98 GMGTHDAIMNSYEYISQGQKTYDHLDNTLDGLYIAPAFMDKLVVHLSKNFMTLPNIKVPL 157
Query: 61 ILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKK 120
ILG+WGGKGQGKSFQCELVF KMGINPIMMSAGELESGNAGEPAKLIRQRYREAAD+IKK
Sbjct: 158 ILGVWGGKGQGKSFQCELVFRKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADLIKK 217
Query: 121 GKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVP 180
GKMCCL INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPT VQLPGMYNK+EN RVP
Sbjct: 218 GKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVP 277
Query: 181 IIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPG 240
IIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFR D V D+ +V+LVDTFPG
Sbjct: 278 IIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRTDGVPDEAVVRLVDTFPG 337
Query: 241 QSIDFFGALRARVYDDEVRKWISGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNM 300
QSIDFFGALRARVYDDEVRKW+SGVGV +IG LVNS+E P FEQP+MT+EKLLEYG M
Sbjct: 338 QSIDFFGALRARVYDDEVRKWVSGVGVENIGTRLVNSREGPPKFEQPKMTLEKLLEYGFM 397
Query: 301 IVQEQENVKRVQLADKYLSEAALGEANEDAIQSGNFY 337
+VQEQENVKRVQLADKYL +AALG+AN+DAI+ G F+
Sbjct: 398 LVQEQENVKRVQLADKYLKDAALGDANKDAIERGTFF 434
>gi|445628|prf||1909374A RuBisCO activase
Length = 383
Score = 613 bits (1580), Expect = e-173, Method: Compositional matrix adjust.
Identities = 287/336 (85%), Positives = 310/336 (92%)
Query: 2 GTGTHYAVMSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLI 61
GTGTH+AV+ SY+Y+SQGLR YNLDN +DG YIAPAFMDKLVVHITKNF+ LPNIKVPLI
Sbjct: 46 GTGTHHAVLQSYEYVSQGLRQYNLDNKLDGFYIAPAFMDKLVVHITKNFLKLPNIKVPLI 105
Query: 62 LGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKG 121
LGIWGGKGQGKSFQCELVF KMGINPIMMSAGELESGNAGEPAKLIRQRYREAA+II+KG
Sbjct: 106 LGIWGGKGQGKSFQCELVFRKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKG 165
Query: 122 KMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPI 181
MCCL INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPT VQLPGMYNK+EN RVPI
Sbjct: 166 NMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPI 225
Query: 182 IVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQ 241
IVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVC GIFR DNV +D+VK+VD FPGQ
Sbjct: 226 IVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCTGIFRTDNVPAEDVVKIVDNFPGQ 285
Query: 242 SIDFFGALRARVYDDEVRKWISGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMI 301
SIDFFGALRARVYDDEVRKW+SG G+ IG L+NS + PTFEQP+MT+EKLLEYGNM+
Sbjct: 286 SIDFFGALRARVYDDEVRKWVSGTGIEKIGDKLLNSFDGPPTFEQPKMTIEKLLEYGNML 345
Query: 302 VQEQENVKRVQLADKYLSEAALGEANEDAIQSGNFY 337
VQEQENVKRVQLADKYL EAALG+AN DAI +G+F+
Sbjct: 346 VQEQENVKRVQLADKYLKEAALGDANADAINNGSFF 381
>gi|10720247|sp|O49074.1|RCA_SOLPN RecName: Full=Ribulose bisphosphate carboxylase/oxygenase activase,
chloroplastic; Short=RA; Short=RuBisCO activase; Flags:
Precursor
gi|2707330|gb|AAC15236.1| rubisco activase [Solanum pennellii]
Length = 459
Score = 612 bits (1579), Expect = e-173, Method: Compositional matrix adjust.
Identities = 281/333 (84%), Positives = 311/333 (93%)
Query: 2 GTGTHYAVMSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLI 61
GTGTH+A+M+SY+Y+SQ L+TY LDN +DG YIAPAFMDKLVVHITKNF++LPNIKVPLI
Sbjct: 100 GTGTHHAIMNSYEYVSQALKTYQLDNKLDGFYIAPAFMDKLVVHITKNFLTLPNIKVPLI 159
Query: 62 LGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKG 121
LG+WGGKGQGKSFQCELVF KMGINPIMMSAGELESGNAGEPAKLIRQRYREAA+II+KG
Sbjct: 160 LGVWGGKGQGKSFQCELVFRKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKG 219
Query: 122 KMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPI 181
MCCL INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPT VQLPGMYNK+EN RVPI
Sbjct: 220 NMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPI 279
Query: 182 IVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQ 241
IVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFR DNV ++ +VK+VD+FPGQ
Sbjct: 280 IVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRTDNVPEEAVVKIVDSFPGQ 339
Query: 242 SIDFFGALRARVYDDEVRKWISGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMI 301
SIDFFGALRARVYDDEVRKW+SG G+ IG+ L+NS++ PTFEQP+MT+EKLLEYGNM+
Sbjct: 340 SIDFFGALRARVYDDEVRKWVSGTGIELIGEKLLNSRDGPPTFEQPKMTLEKLLEYGNML 399
Query: 302 VQEQENVKRVQLADKYLSEAALGEANEDAIQSG 334
VQEQENVKRVQLA+ YL EAALG+AN DAI +G
Sbjct: 400 VQEQENVKRVQLAETYLKEAALGDANADAINTG 432
>gi|167096|gb|AAA63163.1| ribulose 1,5-bisphosphate carboxylase activase isoform 1 [Hordeum
vulgare subsp. vulgare]
Length = 427
Score = 612 bits (1578), Expect = e-173, Method: Compositional matrix adjust.
Identities = 281/337 (83%), Positives = 316/337 (93%)
Query: 2 GTGTHYAVMSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLI 61
G GTH AV+SSY+Y+SQGLR Y+ DNT+ G YIAPAFMDKLVVH++KNFM+LPNIK+PLI
Sbjct: 91 GHGTHEAVLSSYEYVSQGLRKYDFDNTMGGFYIAPAFMDKLVVHLSKNFMTLPNIKIPLI 150
Query: 62 LGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKG 121
LGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAD+IKKG
Sbjct: 151 LGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADMIKKG 210
Query: 122 KMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPI 181
KMCCL INDLDAGAGRMGGTTQYTVNNQMVNATLMNIAD PT VQLPGMYNK ENPRVPI
Sbjct: 211 KMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADAPTNVQLPGMYNKRENPRVPI 270
Query: 182 IVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQ 241
+VTGNDFSTLYAPLIRDGRMEKFYWAPTR+DRIGVCKGIF+ DNV+D+ +VK+VDTFPGQ
Sbjct: 271 VVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRIGVCKGIFQTDNVSDESVVKIVDTFPGQ 330
Query: 242 SIDFFGALRARVYDDEVRKWISGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMI 301
SIDFFGALRARVYDDEVRKW+ G+ +IGK LVNS++ TFEQP+MT+EKLLEYG+M+
Sbjct: 331 SIDFFGALRARVYDDEVRKWVGSTGIENIGKRLVNSRDGPVTFEQPKMTVEKLLEYGHML 390
Query: 302 VQEQENVKRVQLADKYLSEAALGEANEDAIQSGNFYG 338
VQEQ+NVKRVQLAD Y+S+AALG+AN+DA+++G+FYG
Sbjct: 391 VQEQDNVKRVQLADTYMSQAALGDANQDAMKTGSFYG 427
>gi|162458161|ref|NP_001104921.1| ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic
precursor [Zea mays]
gi|29429152|sp|Q9ZT00.3|RCA_MAIZE RecName: Full=Ribulose bisphosphate carboxylase/oxygenase activase,
chloroplastic; Short=RA; Short=RuBisCO activase; Flags:
Precursor
gi|19855034|gb|AAC97932.3| ribulose-1,5-bisphosphate carboxylase/oxygenase activase precursor
[Zea mays]
gi|195620038|gb|ACG31849.1| ribulose bisphosphate carboxylase/oxygenase activase [Zea mays]
gi|313574198|dbj|BAJ41042.1| ribulose-1,5-bisphosphate carboxylase/oxygenase activase small
isoform [Zea mays]
gi|413920136|gb|AFW60068.1| ribulose bisphosphate carboxylase/oxygenase activase, Precursor
isoform 1 [Zea mays]
gi|413920137|gb|AFW60069.1| ribulose bisphosphate carboxylase/oxygenase activase, Precursor
isoform 2 [Zea mays]
Length = 433
Score = 612 bits (1578), Expect = e-172, Method: Compositional matrix adjust.
Identities = 284/337 (84%), Positives = 313/337 (92%)
Query: 1 MGTGTHYAVMSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPL 60
MG GTH AV+SSYDYISQG ++YN DN +DG YIA FMDKLVVH++KNFM+LPNIKVPL
Sbjct: 96 MGDGTHVAVLSSYDYISQGQKSYNFDNMMDGFYIAKGFMDKLVVHLSKNFMTLPNIKVPL 155
Query: 61 ILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKK 120
ILGIWGGKGQGKSFQCELVFAKMGI PIMMSAGELESGNAGEPAKLIRQRYREA+D+IKK
Sbjct: 156 ILGIWGGKGQGKSFQCELVFAKMGITPIMMSAGELESGNAGEPAKLIRQRYREASDLIKK 215
Query: 121 GKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVP 180
GKM CL INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPT VQLPGMYNKE+NPRVP
Sbjct: 216 GKMSCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEDNPRVP 275
Query: 181 IIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPG 240
IIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFR D V ++ +V+LVDTFPG
Sbjct: 276 IIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRTDGVDEEHVVQLVDTFPG 335
Query: 241 QSIDFFGALRARVYDDEVRKWISGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNM 300
QSIDFFGALRARVYDDEVR+W+S GV +I + LVNSKE PTFEQP++T+EKLLEYG+M
Sbjct: 336 QSIDFFGALRARVYDDEVRRWVSETGVENIARKLVNSKEGPPTFEQPKITIEKLLEYGHM 395
Query: 301 IVQEQENVKRVQLADKYLSEAALGEANEDAIQSGNFY 337
+V EQENVKRVQLADKYL+EAALGEANEDA+++G+F+
Sbjct: 396 LVAEQENVKRVQLADKYLNEAALGEANEDAMKTGSFF 432
>gi|337263422|gb|AEI69347.1| chloroplast rubisco activase [Ophiopogon japonicus]
Length = 435
Score = 610 bits (1574), Expect = e-172, Method: Compositional matrix adjust.
Identities = 289/336 (86%), Positives = 308/336 (91%)
Query: 1 MGTGTHYAVMSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPL 60
MG GTH AV++SY+YISQGLR Y ++N +DG YIAP FMDKLVVHITKN+M LPNIKVPL
Sbjct: 100 MGDGTHEAVLNSYEYISQGLRDYGMENKMDGFYIAPEFMDKLVVHITKNYMDLPNIKVPL 159
Query: 61 ILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKK 120
ILGIWGGKGQGK+FQCELVF KMGINPIMMSAGELESGNAGEPAKLIRQRYREAADII K
Sbjct: 160 ILGIWGGKGQGKTFQCELVFRKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIAK 219
Query: 121 GKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVP 180
GKMCCL INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPT VQLPGMYNK+EN RVP
Sbjct: 220 GKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVP 279
Query: 181 IIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPG 240
IIVTGNDFSTLYAPLIRDGRMEKFYWAPTR DRIGVC GIF DNVA DIVKLVD FPG
Sbjct: 280 IIVTGNDFSTLYAPLIRDGRMEKFYWAPTRSDRIGVCTGIFMTDNVAVQDIVKLVDAFPG 339
Query: 241 QSIDFFGALRARVYDDEVRKWISGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNM 300
QSIDFFGALRARVYDDEVRKWIS +GV +GK LVNS E APTFEQP+MT+EKL++YGNM
Sbjct: 340 QSIDFFGALRARVYDDEVRKWISDIGVDKVGKRLVNSAEGAPTFEQPKMTLEKLMDYGNM 399
Query: 301 IVQEQENVKRVQLADKYLSEAALGEANEDAIQSGNF 336
+VQEQENVKRVQLADKYLSEAALG+AN DAI++G F
Sbjct: 400 LVQEQENVKRVQLADKYLSEAALGDANVDAIKTGKF 435
>gi|100615|pir||C23703 ribulose-bisphosphate carboxylase activase (EC 6.3.4.-) A short
form precursor - barley
gi|167091|gb|AAA62702.1| ribulose 1,5-bisphosphate carboxylase activase [Hordeum vulgare
subsp. vulgare]
Length = 427
Score = 610 bits (1573), Expect = e-172, Method: Compositional matrix adjust.
Identities = 281/337 (83%), Positives = 315/337 (93%)
Query: 2 GTGTHYAVMSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLI 61
G GTH AV+SSY+Y+SQGLR Y+ DNT+ G YIAPAFMDKLVVH++KNFM+LPNIK+PLI
Sbjct: 91 GDGTHEAVLSSYEYVSQGLRKYDFDNTMGGFYIAPAFMDKLVVHLSKNFMTLPNIKIPLI 150
Query: 62 LGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKG 121
LGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAD+IKKG
Sbjct: 151 LGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADMIKKG 210
Query: 122 KMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPI 181
KMCCL INDLDAGAGRMGGTTQYTVNNQMVNATLMNIAD PT VQLPGMYNK ENPRVPI
Sbjct: 211 KMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADAPTNVQLPGMYNKRENPRVPI 270
Query: 182 IVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQ 241
+VTGNDFSTLYAPLIRDGRMEKFYWAPTR+DRIGVCKGIF+ DNV D+ +VK+VDTFPGQ
Sbjct: 271 VVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRIGVCKGIFQTDNVCDESVVKIVDTFPGQ 330
Query: 242 SIDFFGALRARVYDDEVRKWISGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMI 301
SIDFFGALRARVYDDEVRKW+ G+ +IGK LVNS++ TFEQP+MT+EKLLEYG+M+
Sbjct: 331 SIDFFGALRARVYDDEVRKWVGSTGIENIGKRLVNSRDGPVTFEQPKMTVEKLLEYGHML 390
Query: 302 VQEQENVKRVQLADKYLSEAALGEANEDAIQSGNFYG 338
VQEQ+NVKRVQLAD Y+S+AALG+AN+DA+++G+FYG
Sbjct: 391 VQEQDNVKRVQLADTYMSQAALGDANQDAMKTGSFYG 427
>gi|116789461|gb|ABK25255.1| unknown [Picea sitchensis]
Length = 440
Score = 610 bits (1572), Expect = e-172, Method: Compositional matrix adjust.
Identities = 281/338 (83%), Positives = 315/338 (93%)
Query: 1 MGTGTHYAVMSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPL 60
MG+GTH VMS+YDYIS RTY+ DNT+DG YIAP+FMDKL+VHI+KNFM+LPNIKVPL
Sbjct: 103 MGSGTHNVVMSTYDYISTAQRTYDFDNTMDGYYIAPSFMDKLLVHISKNFMNLPNIKVPL 162
Query: 61 ILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKK 120
ILGIWGGKGQGKSFQCELVFAK+GINPIMMSAGELESG+AGEPAKL+R+RYREA+DI+KK
Sbjct: 163 ILGIWGGKGQGKSFQCELVFAKLGINPIMMSAGELESGDAGEPAKLLRKRYREASDIVKK 222
Query: 121 GKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVP 180
GKMC L INDLDAGAGRMG TTQYTVNNQMVNATLMNIADNPT VQLPGMYNK++NPRVP
Sbjct: 223 GKMCVLFINDLDAGAGRMGSTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQDNPRVP 282
Query: 181 IIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPG 240
I+VTGNDFSTLYAPLIRDGRMEKFYWAPTR+DRIGVC+GIFR DNV DD+V+LVDTFPG
Sbjct: 283 IVVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRIGVCQGIFRADNVHPDDVVRLVDTFPG 342
Query: 241 QSIDFFGALRARVYDDEVRKWISGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNM 300
QSIDFFGALRARVYDDEVRKW++G G+ +IGK L+NSKE PTFE+P MT+EKLLEYGNM
Sbjct: 343 QSIDFFGALRARVYDDEVRKWVAGTGIQNIGKKLINSKEGPPTFEKPAMTIEKLLEYGNM 402
Query: 301 IVQEQENVKRVQLADKYLSEAALGEANEDAIQSGNFYG 338
+V EQ+NVKRVQLADKY+SEAALG+ANED+I+ G FYG
Sbjct: 403 LVGEQDNVKRVQLADKYMSEAALGDANEDSIKRGTFYG 440
>gi|169930138|gb|ACB05667.1| chloroplast rubisco activase [Capsicum annuum]
Length = 439
Score = 609 bits (1571), Expect = e-172, Method: Compositional matrix adjust.
Identities = 279/335 (83%), Positives = 313/335 (93%)
Query: 2 GTGTHYAVMSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLI 61
GTGTH+A+M+SY+Y+SQGL+ Y++DN +DG YIAPAFMDKLVVHITKNF+ LPNIK+PLI
Sbjct: 105 GTGTHHAIMNSYEYLSQGLKQYSMDNKLDGFYIAPAFMDKLVVHITKNFLQLPNIKIPLI 164
Query: 62 LGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKG 121
LG+WGGKGQGKSFQCELVF KMGINPIMMSAGELESGNAGEPAKLIRQRYREAA+II+KG
Sbjct: 165 LGVWGGKGQGKSFQCELVFRKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKG 224
Query: 122 KMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPI 181
MCCL INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPT VQLPGMYNK+EN RVPI
Sbjct: 225 TMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENCRVPI 284
Query: 182 IVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQ 241
IVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFR DNV D+ +VK+VD+FPGQ
Sbjct: 285 IVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRTDNVPDEAVVKIVDSFPGQ 344
Query: 242 SIDFFGALRARVYDDEVRKWISGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMI 301
SIDFFGALRARVYDDEVRKW+SG G+ ++G+ L+NS++ PTFEQP+MT+EKLLEYGNM+
Sbjct: 345 SIDFFGALRARVYDDEVRKWVSGTGIEAVGEKLLNSRDGPPTFEQPKMTLEKLLEYGNML 404
Query: 302 VQEQENVKRVQLADKYLSEAALGEANEDAIQSGNF 336
V+EQENVKRVQLA+ YL EAALG+AN DAI +G F
Sbjct: 405 VKEQENVKRVQLAETYLKEAALGDANADAINTGAF 439
>gi|10720248|sp|O64981.1|RCA_PHAVU RecName: Full=Ribulose bisphosphate carboxylase/oxygenase activase,
chloroplastic; Short=RA; Short=RuBisCO activase; Flags:
Precursor
gi|3033513|gb|AAC12868.1| rubisco activase [Phaseolus vulgaris]
Length = 441
Score = 609 bits (1571), Expect = e-172, Method: Compositional matrix adjust.
Identities = 286/337 (84%), Positives = 310/337 (91%)
Query: 1 MGTGTHYAVMSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPL 60
M GTHYAV+SS+ Y+S GLR YN DN DG YIAPAF+DKLVVHI KNFM+LPNIKVPL
Sbjct: 104 MDAGTHYAVISSHKYLSAGLRQYNFDNIKDGFYIAPAFLDKLVVHIAKNFMTLPNIKVPL 163
Query: 61 ILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKK 120
ILG+WGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREA+D+IKK
Sbjct: 164 ILGVWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREASDLIKK 223
Query: 121 GKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVP 180
GKMC L INDLDAGAGR+GGTTQYTVNNQMVNATLMNIADNPT VQLPGMYNKE+N RVP
Sbjct: 224 GKMCVLFINDLDAGAGRLGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEDNARVP 283
Query: 181 IIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPG 240
IIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFR D V + DIV+LVD PG
Sbjct: 284 IIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRTDGVPEKDIVELVDKHPG 343
Query: 241 QSIDFFGALRARVYDDEVRKWISGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNM 300
QSIDFFGALRARVYDDEVRKWISGVGV S+GK LVNSKE PTF+QP+MT++KLL Y +M
Sbjct: 344 QSIDFFGALRARVYDDEVRKWISGVGVDSVGKKLVNSKEGPPTFDQPKMTLDKLLLYASM 403
Query: 301 IVQEQENVKRVQLADKYLSEAALGEANEDAIQSGNFY 337
+VQEQENVKRVQLAD+YL+EAALG ANEDAI+SG+F+
Sbjct: 404 LVQEQENVKRVQLADQYLNEAALGNANEDAIKSGSFF 440
>gi|21950712|gb|AAM78591.1| rubisco activase [Chenopodium quinoa]
Length = 438
Score = 609 bits (1570), Expect = e-172, Method: Compositional matrix adjust.
Identities = 285/338 (84%), Positives = 309/338 (91%)
Query: 1 MGTGTHYAVMSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPL 60
M +GTH V SS +Y SQGLR YN+DN + YIAP+FMDK+VVHITKN+++LPNIKVPL
Sbjct: 101 MDSGTHVPVQSSLEYESQGLRKYNIDNMLGNFYIAPSFMDKIVVHITKNYLNLPNIKVPL 160
Query: 61 ILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKK 120
ILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADII K
Sbjct: 161 ILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIAK 220
Query: 121 GKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVP 180
GKMC L INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPT VQLPGMYNK+EN RVP
Sbjct: 221 GKMCALFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVP 280
Query: 181 IIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPG 240
IIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGV GIFR DNV +D +VKLVDTFPG
Sbjct: 281 IIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVATGIFRTDNVPEDHVVKLVDTFPG 340
Query: 241 QSIDFFGALRARVYDDEVRKWISGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNM 300
QSIDFFGALRARVYDDEVRKW+S VG+ ++GK LVNS++ P FEQP+MT+EKLLEYGNM
Sbjct: 341 QSIDFFGALRARVYDDEVRKWVSEVGIDAVGKKLVNSRDGPPVFEQPKMTLEKLLEYGNM 400
Query: 301 IVQEQENVKRVQLADKYLSEAALGEANEDAIQSGNFYG 338
+VQEQENVKRVQLADKYLSEAALG+AN+DAI SG F+G
Sbjct: 401 LVQEQENVKRVQLADKYLSEAALGDANKDAIASGAFFG 438
>gi|223948607|gb|ACN28387.1| unknown [Zea mays]
Length = 383
Score = 608 bits (1569), Expect = e-171, Method: Compositional matrix adjust.
Identities = 284/337 (84%), Positives = 313/337 (92%)
Query: 1 MGTGTHYAVMSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPL 60
MG GTH AV+SSYDYISQG ++YN DN +DG YIA FMDKLVVH++KNFM+LPNIKVPL
Sbjct: 46 MGDGTHVAVLSSYDYISQGQKSYNFDNMMDGFYIAKGFMDKLVVHLSKNFMTLPNIKVPL 105
Query: 61 ILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKK 120
ILGIWGGKGQGKSFQCELVFAKMGI PIMMSAGELESGNAGEPAKLIRQRYREA+D+IKK
Sbjct: 106 ILGIWGGKGQGKSFQCELVFAKMGITPIMMSAGELESGNAGEPAKLIRQRYREASDLIKK 165
Query: 121 GKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVP 180
GKM CL INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPT VQLPGMYNKE+NPRVP
Sbjct: 166 GKMSCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEDNPRVP 225
Query: 181 IIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPG 240
IIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFR D V ++ +V+LVDTFPG
Sbjct: 226 IIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRTDGVDEEHVVQLVDTFPG 285
Query: 241 QSIDFFGALRARVYDDEVRKWISGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNM 300
QSIDFFGALRARVYDDEVR+W+S GV +I + LVNSKE PTFEQP++T+EKLLEYG+M
Sbjct: 286 QSIDFFGALRARVYDDEVRRWVSETGVENIARKLVNSKEGPPTFEQPKITIEKLLEYGHM 345
Query: 301 IVQEQENVKRVQLADKYLSEAALGEANEDAIQSGNFY 337
+V EQENVKRVQLADKYL+EAALGEANEDA+++G+F+
Sbjct: 346 LVAEQENVKRVQLADKYLNEAALGEANEDAMKTGSFF 382
>gi|407911676|gb|AFU50386.1| chloroplast ribulose bisphosphate carboxylase/oxygenase activase
small isoform b [Ipomoea batatas]
Length = 439
Score = 608 bits (1567), Expect = e-171, Method: Compositional matrix adjust.
Identities = 282/337 (83%), Positives = 312/337 (92%)
Query: 1 MGTGTHYAVMSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPL 60
MGTGTH+AV+SSY+Y+SQG +TY+LDN +DG YIAPAFMDKLVVHITKNF+ LPNIK+PL
Sbjct: 101 MGTGTHHAVLSSYEYVSQGQKTYSLDNKLDGFYIAPAFMDKLVVHITKNFLKLPNIKIPL 160
Query: 61 ILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKK 120
ILGIWGGKGQGKSFQCELVF KMGINPIMMSAGELESGNAGEPAKLIRQRYREAA+ I+K
Sbjct: 161 ILGIWGGKGQGKSFQCELVFRKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAENIRK 220
Query: 121 GKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVP 180
G MCCL INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPT VQLPGMYNK+EN RVP
Sbjct: 221 GNMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVP 280
Query: 181 IIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPG 240
IIVTGNDFSTLYAPLIRDGRMEKFYWAPTR+DR+GVCKGIFR D V D+ +VKLVDTFPG
Sbjct: 281 IIVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRVGVCKGIFRTDGVPDEHVVKLVDTFPG 340
Query: 241 QSIDFFGALRARVYDDEVRKWISGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNM 300
QSIDFFGALRARVYDDEVRK+++G+GV + + L+NS+E AP F QP+MT+EKLLEYGNM
Sbjct: 341 QSIDFFGALRARVYDDEVRKFVAGLGVEKVNERLLNSREGAPVFAQPKMTIEKLLEYGNM 400
Query: 301 IVQEQENVKRVQLADKYLSEAALGEANEDAIQSGNFY 337
+VQEQENVKRVQLADKYL EAALG+AN DAI +G F+
Sbjct: 401 LVQEQENVKRVQLADKYLKEAALGDANADAINNGTFF 437
>gi|407911666|gb|AFU50381.1| chloroplast ribulose bisphosphate carboxylase/oxygenase activase
small isoform [Ipomoea batatas]
Length = 439
Score = 608 bits (1567), Expect = e-171, Method: Compositional matrix adjust.
Identities = 282/337 (83%), Positives = 312/337 (92%)
Query: 1 MGTGTHYAVMSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPL 60
MGTGTH+AV+SSY+Y+SQG +TY+LDN +DG YIAPAFMDKLVVHITKNF+ LPNIK+PL
Sbjct: 101 MGTGTHHAVLSSYEYVSQGQKTYSLDNKLDGFYIAPAFMDKLVVHITKNFLKLPNIKIPL 160
Query: 61 ILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKK 120
ILGIWGGKGQGKSFQCELVF KMGINPIMMSAGELESGNAGEPAKLIRQRYREAA+ I+K
Sbjct: 161 ILGIWGGKGQGKSFQCELVFRKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAENIRK 220
Query: 121 GKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVP 180
G MCCL INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPT VQLPGMYNK+EN RVP
Sbjct: 221 GNMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVP 280
Query: 181 IIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPG 240
IIVTGNDFSTLYAPLIRDGRMEKFYWAPTR+DR+GVCKGIFR D V D+ +VKLVDTFPG
Sbjct: 281 IIVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRVGVCKGIFRTDGVPDEHVVKLVDTFPG 340
Query: 241 QSIDFFGALRARVYDDEVRKWISGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNM 300
QSIDFFGALRARVYDDEVRK+++G+GV + + L+NS+E AP F QP+MT+EKLLEYGNM
Sbjct: 341 QSIDFFGALRARVYDDEVRKFVAGLGVEKVNERLLNSREGAPVFAQPKMTIEKLLEYGNM 400
Query: 301 IVQEQENVKRVQLADKYLSEAALGEANEDAIQSGNFY 337
+VQEQENVKRVQLADKYL EAALG+AN DAI +G F+
Sbjct: 401 LVQEQENVKRVQLADKYLKEAALGDANADAINNGTFF 437
>gi|162312077|gb|ABX84141.1| rubisco activase [Ipomoea batatas]
gi|407911674|gb|AFU50385.1| chloroplast ribulose bisphosphate carboxylase/oxygenase activase
small isoform a [Ipomoea batatas]
Length = 439
Score = 608 bits (1567), Expect = e-171, Method: Compositional matrix adjust.
Identities = 282/337 (83%), Positives = 312/337 (92%)
Query: 1 MGTGTHYAVMSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPL 60
MGTGTH+AV+SSY+Y+SQG +TY+LDN +DG YIAPAFMDKLVVHITKNF+ LPNIK+PL
Sbjct: 101 MGTGTHHAVLSSYEYVSQGQKTYSLDNKLDGFYIAPAFMDKLVVHITKNFLKLPNIKIPL 160
Query: 61 ILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKK 120
ILGIWGGKGQGKSFQCELVF KMGINPIMMSAGELESGNAGEPAKLIRQRYREAA+ I+K
Sbjct: 161 ILGIWGGKGQGKSFQCELVFRKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAENIRK 220
Query: 121 GKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVP 180
G MCCL INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPT VQLPGMYNK+EN RVP
Sbjct: 221 GNMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVP 280
Query: 181 IIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPG 240
IIVTGNDFSTLYAPLIRDGRMEKFYWAPTR+DR+GVCKGIFR D V D+ +VKLVDTFPG
Sbjct: 281 IIVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRVGVCKGIFRTDGVPDEHVVKLVDTFPG 340
Query: 241 QSIDFFGALRARVYDDEVRKWISGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNM 300
QSIDFFGALRARVYDDEVRK+++G+GV + + L+NS+E AP F QP+MT+EKLLEYGNM
Sbjct: 341 QSIDFFGALRARVYDDEVRKFVAGLGVEKVNERLLNSREGAPVFAQPKMTIEKLLEYGNM 400
Query: 301 IVQEQENVKRVQLADKYLSEAALGEANEDAIQSGNFY 337
+VQEQENVKRVQLADKYL EAALG+AN DAI +G F+
Sbjct: 401 LVQEQENVKRVQLADKYLKEAALGDANADAINNGTFF 437
>gi|224284512|gb|ACN39989.1| unknown [Picea sitchensis]
Length = 368
Score = 607 bits (1564), Expect = e-171, Method: Compositional matrix adjust.
Identities = 286/375 (76%), Positives = 321/375 (85%), Gaps = 27/375 (7%)
Query: 1 MGTGTHYAVMSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPL 60
MG+GTH VMS+YDYIS RTY+ DNT+DG YIAP+FMDKL+VHI+KNFM+LPNIKVPL
Sbjct: 18 MGSGTHNVVMSTYDYISTAQRTYDFDNTMDGYYIAPSFMDKLLVHISKNFMNLPNIKVPL 77
Query: 61 ILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKK 120
ILGIWGGKGQGKSFQCELVFAK+GINPIMMSAGELESG+AGEPAKL+R+RYREA+DI+KK
Sbjct: 78 ILGIWGGKGQGKSFQCELVFAKLGINPIMMSAGELESGDAGEPAKLLRKRYREASDIVKK 137
Query: 121 GKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVP 180
GKMC L INDLDAGAGRMG TTQYTVNNQMVNATLMNIADNPT VQLPGMYNK++NPRVP
Sbjct: 138 GKMCVLFINDLDAGAGRMGSTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQDNPRVP 197
Query: 181 IIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPG 240
I+VTGNDFSTLYAPLIRDGRMEKFYWAPTR+DRIGVC+GIFR DNV DD+V+LVDTFPG
Sbjct: 198 IVVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRIGVCQGIFRADNVHPDDVVRLVDTFPG 257
Query: 241 QSIDFFGALRARVYDDEVRKWISGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNM 300
QSIDFFGALRARVYDDEVRKW++G G+ +IGK L+NSKE PTFE+P MT+EKLLEYGNM
Sbjct: 258 QSIDFFGALRARVYDDEVRKWVAGTGIQNIGKKLINSKEGPPTFEKPAMTIEKLLEYGNM 317
Query: 301 IVQEQENVKRVQLADKYLSEAALGEANEDAIQSGNFYGKAAQQMNVPVPEGCTDPTAENF 360
+V EQ+NVKRVQL D +N+PVPEGCTDP A N+
Sbjct: 318 LVGEQDNVKRVQLVD---------------------------NVNLPVPEGCTDPRAANY 350
Query: 361 DPTARSDDGSCQYTL 375
DPTARSD+GSC+Y
Sbjct: 351 DPTARSDNGSCEYEF 365
>gi|407911678|gb|AFU50387.1| chloroplast ribulose bisphosphate carboxylase/oxygenase activase
small isoform c [Ipomoea batatas]
Length = 439
Score = 606 bits (1563), Expect = e-171, Method: Compositional matrix adjust.
Identities = 281/337 (83%), Positives = 312/337 (92%)
Query: 1 MGTGTHYAVMSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPL 60
MGTGTH+AV+SSY+Y+SQG +TY+LDN +DG YIAPAFMDKLVVHITKNF+ LPNIK+PL
Sbjct: 101 MGTGTHHAVLSSYEYVSQGQKTYSLDNKLDGFYIAPAFMDKLVVHITKNFLKLPNIKIPL 160
Query: 61 ILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKK 120
ILGIWGGKGQGKSFQCELVF KMGINPIMMSAGELESGNAGEPAKLIRQRYREAA+ I+K
Sbjct: 161 ILGIWGGKGQGKSFQCELVFRKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAENIRK 220
Query: 121 GKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVP 180
G MCCL INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPT VQLPGMYNK+EN RVP
Sbjct: 221 GNMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVP 280
Query: 181 IIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPG 240
IIVTGNDFSTLYAPLIRDGRMEKFYWAPTR+DR+GVCKGIF+ D V D+ +VKLVDTFPG
Sbjct: 281 IIVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRVGVCKGIFKTDGVPDEHVVKLVDTFPG 340
Query: 241 QSIDFFGALRARVYDDEVRKWISGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNM 300
QSIDFFGALRARVYDDEVRK+++G+GV + + L+NS+E AP F QP+MT+EKLLEYGNM
Sbjct: 341 QSIDFFGALRARVYDDEVRKFVAGLGVEKVNERLLNSREGAPVFAQPKMTIEKLLEYGNM 400
Query: 301 IVQEQENVKRVQLADKYLSEAALGEANEDAIQSGNFY 337
+VQEQENVKRVQLADKYL EAALG+AN DAI +G F+
Sbjct: 401 LVQEQENVKRVQLADKYLKEAALGDANADAINNGTFF 437
>gi|242072103|ref|XP_002451328.1| hypothetical protein SORBIDRAFT_05g027870 [Sorghum bicolor]
gi|241937171|gb|EES10316.1| hypothetical protein SORBIDRAFT_05g027870 [Sorghum bicolor]
Length = 440
Score = 605 bits (1560), Expect = e-170, Method: Compositional matrix adjust.
Identities = 282/337 (83%), Positives = 310/337 (91%)
Query: 1 MGTGTHYAVMSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPL 60
MG GTH AV+SSYDYISQG +TY+ DN +DG YI+ +FMDKLVVH++KNFMSLPNIKVPL
Sbjct: 103 MGDGTHVAVLSSYDYISQGQKTYSFDNMMDGFYISKSFMDKLVVHLSKNFMSLPNIKVPL 162
Query: 61 ILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKK 120
ILGIWGGKGQGKSFQCELVF+KMGI PIMMSAGELESGNAGEPAKLIRQRYREAAD+I K
Sbjct: 163 ILGIWGGKGQGKSFQCELVFSKMGIIPIMMSAGELESGNAGEPAKLIRQRYREAADLISK 222
Query: 121 GKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVP 180
GKM CL INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPT VQLPGMYNK +N RVP
Sbjct: 223 GKMSCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKVDNARVP 282
Query: 181 IIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPG 240
IIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFR D V ++ +V+LVDTFPG
Sbjct: 283 IIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRTDGVDEEHVVQLVDTFPG 342
Query: 241 QSIDFFGALRARVYDDEVRKWISGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNM 300
QSIDFFGALRARVYDDEVR+W++ GV +I K LVNSKE PTFEQP+MT+EKLLEYG+M
Sbjct: 343 QSIDFFGALRARVYDDEVRRWVAETGVENIAKKLVNSKEGPPTFEQPKMTIEKLLEYGHM 402
Query: 301 IVQEQENVKRVQLADKYLSEAALGEANEDAIQSGNFY 337
+V EQENVKRVQLADKYL+EAALG ANEDA+++GNF+
Sbjct: 403 LVAEQENVKRVQLADKYLNEAALGAANEDAMKTGNFF 439
>gi|297612474|ref|NP_001068555.2| Os11g0707000 [Oryza sativa Japonica Group]
gi|255680411|dbj|BAF28918.2| Os11g0707000 [Oryza sativa Japonica Group]
Length = 350
Score = 603 bits (1556), Expect = e-170, Method: Compositional matrix adjust.
Identities = 283/326 (86%), Positives = 309/326 (94%)
Query: 15 YISQGLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSF 74
Y+SQGLRTY+ DNT+ G YIAPAFMDKLVVHI+KNFM+LPNIKVPLILGIWGGKGQGKSF
Sbjct: 22 YLSQGLRTYDFDNTMGGFYIAPAFMDKLVVHISKNFMTLPNIKVPLILGIWGGKGQGKSF 81
Query: 75 QCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAG 134
QCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCL INDLDAG
Sbjct: 82 QCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAG 141
Query: 135 AGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAP 194
AGRMGGTTQYTVNNQMVNATLMNIADNPT VQLPGMYNKE+NPRVPIIVTGNDFSTLYAP
Sbjct: 142 AGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEDNPRVPIIVTGNDFSTLYAP 201
Query: 195 LIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVY 254
LIRDGRMEKFYWAPTR+DR+GVCKGIFR DNV D+DIVK+VD+FPGQSIDFFGALRARVY
Sbjct: 202 LIRDGRMEKFYWAPTRDDRVGVCKGIFRTDNVPDEDIVKIVDSFPGQSIDFFGALRARVY 261
Query: 255 DDEVRKWISGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLA 314
DDEVRKW+S GV +IGK LVNS+E P FEQP+MT+EKL+EYG M+V+EQENVKRVQLA
Sbjct: 262 DDEVRKWVSDTGVENIGKRLVNSREGPPEFEQPKMTIEKLMEYGYMLVKEQENVKRVQLA 321
Query: 315 DKYLSEAALGEANEDAIQSGNFYGKA 340
++YLSEAALG+AN DA+++G+FYG A
Sbjct: 322 EQYLSEAALGDANSDAMKTGSFYGSA 347
>gi|168054092|ref|XP_001779467.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162669152|gb|EDQ55745.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 410
Score = 599 bits (1545), Expect = e-169, Method: Compositional matrix adjust.
Identities = 281/338 (83%), Positives = 307/338 (90%)
Query: 1 MGTGTHYAVMSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPL 60
+G GT MSS+DY+S G RTYN DN DGLYIAPAFMDKL++HI KNFM+LP IKVPL
Sbjct: 65 VGLGTQVVTMSSWDYVSTGQRTYNFDNMKDGLYIAPAFMDKLIIHIAKNFMNLPGIKVPL 124
Query: 61 ILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKK 120
ILG+WGGKGQGKSFQCELV +K+GINPI+MSAGELESGNAGEPAKLIRQRYREAAD+IKK
Sbjct: 125 ILGVWGGKGQGKSFQCELVMSKLGINPIVMSAGELESGNAGEPAKLIRQRYREAADVIKK 184
Query: 121 GKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVP 180
GKMC L INDLDAGAGRMGGTTQYTVNNQMVNATLMNIAD+PT VQLPG+YNKEE PRVP
Sbjct: 185 GKMCALFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADSPTNVQLPGVYNKEEIPRVP 244
Query: 181 IIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPG 240
IIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFR DNV+DD++ KLVD+FPG
Sbjct: 245 IIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRLDNVSDDNVTKLVDSFPG 304
Query: 241 QSIDFFGALRARVYDDEVRKWISGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNM 300
QSIDFFGALRARVYDDEVRKWIS GV +IGK LVNSK+ PTFE+P MT+EKL+EYGNM
Sbjct: 305 QSIDFFGALRARVYDDEVRKWISATGVDNIGKKLVNSKDGPPTFEKPAMTIEKLMEYGNM 364
Query: 301 IVQEQENVKRVQLADKYLSEAALGEANEDAIQSGNFYG 338
+VQEQ+NVKRVQLAD+YLS AALG+AN DAI G FYG
Sbjct: 365 LVQEQQNVKRVQLADQYLSSAALGDANADAISQGTFYG 402
>gi|168047151|ref|XP_001776035.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162672693|gb|EDQ59227.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 445
Score = 597 bits (1539), Expect = e-168, Method: Compositional matrix adjust.
Identities = 280/337 (83%), Positives = 306/337 (90%)
Query: 1 MGTGTHYAVMSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPL 60
+G GT MSS+DY+S G RTYN DN DGLYIAPAFMDKL++HI KNFM+LP IKVPL
Sbjct: 100 VGLGTQVVTMSSWDYVSTGQRTYNFDNMKDGLYIAPAFMDKLIIHIAKNFMNLPGIKVPL 159
Query: 61 ILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKK 120
ILGIWGGKGQGKSFQCELV AK+GINPI+MSAGELESGNAGEPAKLIRQRYREAAD+IKK
Sbjct: 160 ILGIWGGKGQGKSFQCELVMAKLGINPIVMSAGELESGNAGEPAKLIRQRYREAADVIKK 219
Query: 121 GKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVP 180
GKMC L INDLDAGAGRMGGTTQYTVNNQMVNATLMNIAD+PT VQLPG+YNKEE PRVP
Sbjct: 220 GKMCALFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADSPTNVQLPGVYNKEEIPRVP 279
Query: 181 IIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPG 240
IIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFR DNV+DD++ KLVD FPG
Sbjct: 280 IIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRLDNVSDDNVTKLVDQFPG 339
Query: 241 QSIDFFGALRARVYDDEVRKWISGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNM 300
QSIDFFGALRARVYDDEVRKWI+G GV +IGK+LVNSK PTFE+P MT+EKL+EYG M
Sbjct: 340 QSIDFFGALRARVYDDEVRKWIAGTGVENIGKNLVNSKNGPPTFEKPAMTIEKLMEYGEM 399
Query: 301 IVQEQENVKRVQLADKYLSEAALGEANEDAIQSGNFY 337
+VQEQ+NVKRVQLA++YLS AALG+AN DAI+ G FY
Sbjct: 400 LVQEQQNVKRVQLAEQYLSSAALGDANADAIKQGTFY 436
>gi|94549022|gb|ABF38996.1| ribulose-1,5-bisphosphate carboxylase/oxygenase activase
[Pachysandra terminalis]
Length = 314
Score = 590 bits (1520), Expect = e-166, Method: Compositional matrix adjust.
Identities = 278/313 (88%), Positives = 297/313 (94%)
Query: 63 GIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGK 122
GIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADII+KGK
Sbjct: 2 GIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIRKGK 61
Query: 123 MCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPII 182
MCCL INDLDAGAGR+GGTTQYTVNNQMVNATLMNIADNPT VQLPGMYNKEENPRVP+I
Sbjct: 62 MCCLFINDLDAGAGRLGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRVPVI 121
Query: 183 VTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQS 242
VTGNDFSTLYAPLIRDGRMEKFYWAPTR+DRIGVC GIF+ DNV +D+VK+VDTFPGQS
Sbjct: 122 VTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRIGVCTGIFKADNVPPEDVVKIVDTFPGQS 181
Query: 243 IDFFGALRARVYDDEVRKWISGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIV 302
IDFFGALRARVYDDEVRKWISGVGV +GK LVNS+E PTFEQP+MT+EKLLEYGNM+V
Sbjct: 182 IDFFGALRARVYDDEVRKWISGVGVDKVGKKLVNSREGPPTFEQPKMTVEKLLEYGNMLV 241
Query: 303 QEQENVKRVQLADKYLSEAALGEANEDAIQSGNFYGKAAQQMNVPVPEGCTDPTAENFDP 362
QEQENVKRVQLADKYLSEAALG+AN+DAI SG FYGKAAQQ+ +PVPEGCTDP+A+NFDP
Sbjct: 242 QEQENVKRVQLADKYLSEAALGDANKDAINSGTFYGKAAQQVKLPVPEGCTDPSAQNFDP 301
Query: 363 TARSDDGSCQYTL 375
TARSDDGSC Y L
Sbjct: 302 TARSDDGSCLYQL 314
>gi|302803723|ref|XP_002983614.1| hypothetical protein SELMODRAFT_445595 [Selaginella moellendorffii]
gi|300148451|gb|EFJ15110.1| hypothetical protein SELMODRAFT_445595 [Selaginella moellendorffii]
Length = 440
Score = 589 bits (1519), Expect = e-166, Method: Compositional matrix adjust.
Identities = 277/337 (82%), Positives = 303/337 (89%), Gaps = 1/337 (0%)
Query: 1 MGTGTHYAVMSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPL 60
MG GT A+MSSY+YIS R + DNT DG YIAPAFM+KL++HI KNFMSLPNIKVPL
Sbjct: 104 MGMGTQTAIMSSYEYISTAQRNFAFDNTKDGFYIAPAFMEKLMIHIAKNFMSLPNIKVPL 163
Query: 61 ILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKK 120
ILGIWGGKGQGKSFQCELVF+K+G+NPIMMSAGELESGNAGEPAKLIRQRYREAADIIKK
Sbjct: 164 ILGIWGGKGQGKSFQCELVFSKLGVNPIMMSAGELESGNAGEPAKLIRQRYREAADIIKK 223
Query: 121 -GKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRV 179
GKMCCL INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPT VQLPG+YNKEE PRV
Sbjct: 224 KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGIYNKEEIPRV 283
Query: 180 PIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFP 239
PIIVTGNDFSTLYAPLIRDGRMEK+YWAPTREDRIGVCKGIFR D +A+DD+VKLVD FP
Sbjct: 284 PIIVTGNDFSTLYAPLIRDGRMEKYYWAPTREDRIGVCKGIFRTDGIAEDDMVKLVDAFP 343
Query: 240 GQSIDFFGALRARVYDDEVRKWISGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGN 299
GQSIDFFGALRARVYDDEVRKWI GV +IG LVNS++ PTF +P MT+ KL+ YG
Sbjct: 344 GQSIDFFGALRARVYDDEVRKWIESTGVENIGSKLVNSRDGPPTFAKPAMTINKLMSYGY 403
Query: 300 MIVQEQENVKRVQLADKYLSEAALGEANEDAIQSGNF 336
M+V+EQENVKRVQLA+KY+SEAALG+ANEDAI+ G F
Sbjct: 404 MLVKEQENVKRVQLAEKYMSEAALGDANEDAIKQGTF 440
>gi|302802165|ref|XP_002982838.1| hypothetical protein SELMODRAFT_268623 [Selaginella moellendorffii]
gi|300149428|gb|EFJ16083.1| hypothetical protein SELMODRAFT_268623 [Selaginella moellendorffii]
Length = 440
Score = 586 bits (1511), Expect = e-165, Method: Compositional matrix adjust.
Identities = 275/337 (81%), Positives = 303/337 (89%), Gaps = 1/337 (0%)
Query: 1 MGTGTHYAVMSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPL 60
+G GT A+MSSY+YIS R + DNT DG YIAPAFM+KL++HI KNFMSLPNIKVPL
Sbjct: 104 IGMGTQNAIMSSYEYISTAQRNFAFDNTKDGFYIAPAFMEKLMIHIAKNFMSLPNIKVPL 163
Query: 61 ILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKK 120
ILGIWGGKGQGKSFQCELVF+K+G+NPIMMSAGELESGNAGEPAKLIRQRYREAADIIKK
Sbjct: 164 ILGIWGGKGQGKSFQCELVFSKLGVNPIMMSAGELESGNAGEPAKLIRQRYREAADIIKK 223
Query: 121 -GKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRV 179
GKMCCL INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPT VQLPG+YNKEE PRV
Sbjct: 224 KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGIYNKEEIPRV 283
Query: 180 PIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFP 239
PIIVTGNDFSTLYAPLIRDGRMEK+YWAPTREDRIGVCKGIFR D ++DDD+V+LVD FP
Sbjct: 284 PIIVTGNDFSTLYAPLIRDGRMEKYYWAPTREDRIGVCKGIFRTDGISDDDMVRLVDAFP 343
Query: 240 GQSIDFFGALRARVYDDEVRKWISGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGN 299
GQSIDFFGALRARVYDDEVRKWI GV +IG LVNS++ PTF +P MT+ KL+ YG
Sbjct: 344 GQSIDFFGALRARVYDDEVRKWIESTGVENIGSKLVNSRDGPPTFAKPAMTINKLMSYGY 403
Query: 300 MIVQEQENVKRVQLADKYLSEAALGEANEDAIQSGNF 336
M+V+EQENVKRVQLA+KY+SEAALG+ANEDAI+ G F
Sbjct: 404 MLVKEQENVKRVQLAEKYMSEAALGDANEDAIKQGTF 440
>gi|4261547|gb|AAD13841.1|S45033_11 rubisco activase [Spinacia oleracea]
Length = 435
Score = 583 bits (1503), Expect = e-164, Method: Compositional matrix adjust.
Identities = 269/335 (80%), Positives = 301/335 (89%)
Query: 4 GTHYAVMSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILG 63
GTH + SS++Y SQGLR Y++DN + YIAPAFMDKLVVHITKNF++LPNIK+PLILG
Sbjct: 101 GTHVPIQSSFEYESQGLRKYDIDNMLGDFYIAPAFMDKLVVHITKNFLNLPNIKIPLILG 160
Query: 64 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 123
+WGGKGQGKSFQCELVFAK+GINPIMMSAGELESGNAGEPAKLIRQRYREAAD+I KGKM
Sbjct: 161 VWGGKGQGKSFQCELVFAKLGINPIMMSAGELESGNAGEPAKLIRQRYREAADLIAKGKM 220
Query: 124 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 183
C L INDL+ GAGRMGGTTQYTVNNQMVNATLMNIADNPT VQLPGMYNK++N RVPIIV
Sbjct: 221 CALFINDLEPGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQDNARVPIIV 280
Query: 184 TGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSI 243
TGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVC GIF+ D V + +VKLVD FPGQSI
Sbjct: 281 TGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCTGIFKTDKVPAEHVVKLVDAFPGQSI 340
Query: 244 DFFGALRARVYDDEVRKWISGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQ 303
DFFGALRARVY DEVRKW++ VGV ++GK LVNSK+ P FEQP MT++KL+EYGNM+VQ
Sbjct: 341 DFFGALRARVYHDEVRKWVNSVGVDNVGKKLVNSKDGPPVFEQPEMTLQKLMEYGNMLVQ 400
Query: 304 EQENVKRVQLADKYLSEAALGEANEDAIQSGNFYG 338
EQENVKRVQLAD+Y+S AALG+AN+DAI G F+G
Sbjct: 401 EQENVKRVQLADQYMSSAALGDANKDAIDRGTFFG 435
>gi|168052682|ref|XP_001778769.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162669888|gb|EDQ56467.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 471
Score = 583 bits (1503), Expect = e-164, Method: Compositional matrix adjust.
Identities = 277/343 (80%), Positives = 305/343 (88%)
Query: 2 GTGTHYAVMSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLI 61
G GT A+MSS+ Y+SQG RTY++DN DGLYIAPAFMDKLV+HI KNFM+LP IKVPLI
Sbjct: 93 GLGTQNAIMSSWGYVSQGQRTYSMDNIKDGLYIAPAFMDKLVIHIAKNFMNLPGIKVPLI 152
Query: 62 LGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKG 121
LGIWGGKGQGKSFQCELV +K+GINPI+MSAGELESGNAGEPAKLIRQRYREAAD+IKKG
Sbjct: 153 LGIWGGKGQGKSFQCELVMSKLGINPIVMSAGELESGNAGEPAKLIRQRYREAADVIKKG 212
Query: 122 KMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPI 181
KMC L INDLDAG GRMGGTTQYTVNNQMVNATLMNIADNPT VQLP +YNKE PRVPI
Sbjct: 213 KMCALFINDLDAGTGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPSIYNKETIPRVPI 272
Query: 182 IVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQ 241
IVTGNDF TLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFR DNV D D+ KLVD FPGQ
Sbjct: 273 IVTGNDFPTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRLDNVHDYDVAKLVDQFPGQ 332
Query: 242 SIDFFGALRARVYDDEVRKWISGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMI 301
SIDFFGALRARVYDDEVRKWI+ VG+ +IG++LVNSK+ PTF++P MT++KL+EYGN++
Sbjct: 333 SIDFFGALRARVYDDEVRKWIAKVGIENIGRNLVNSKDGPPTFQKPAMTIDKLMEYGNLL 392
Query: 302 VQEQENVKRVQLADKYLSEAALGEANEDAIQSGNFYGKAAQQM 344
VQEQ+NVKRVQLADKYLS AL +AN DAIQ G FYGK M
Sbjct: 393 VQEQQNVKRVQLADKYLSSDALVDANADAIQQGTFYGKKTGWM 435
>gi|266893|sp|Q01587.1|RCA_CUCSA RecName: Full=Ribulose bisphosphate carboxylase/oxygenase activase,
chloroplastic; Short=RA; Short=RuBisCO activase; Flags:
Precursor
gi|18284|emb|CAA47906.1| rubisco activase [Cucumis sativus]
Length = 413
Score = 581 bits (1498), Expect = e-163, Method: Compositional matrix adjust.
Identities = 273/314 (86%), Positives = 292/314 (92%)
Query: 1 MGTGTHYAVMSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPL 60
MGTGTH AV+SSY+YIS GLR Y+ DN +DG YIAPAFMDKL VHI KNF++LPNIKVPL
Sbjct: 97 MGTGTHNAVLSSYEYISAGLRDYSYDNNVDGFYIAPAFMDKLTVHIVKNFLTLPNIKVPL 156
Query: 61 ILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKK 120
ILG+WGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKK
Sbjct: 157 ILGVWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKK 216
Query: 121 GKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVP 180
GKMCCL INDLDAGAGR+GGTTQYTVNNQMVNATLMNIADNPT VQLPGMYNKEENPRVP
Sbjct: 217 GKMCCLFINDLDAGAGRLGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRVP 276
Query: 181 IIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPG 240
IIVTGNDFSTLYAPLIRDGRM+KFYWAPTREDRIG+C GIFR D V +DIVKLVDTFPG
Sbjct: 277 IIVTGNDFSTLYAPLIRDGRMDKFYWAPTREDRIGICTGIFRTDGVPFEDIVKLVDTFPG 336
Query: 241 QSIDFFGALRARVYDDEVRKWISGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNM 300
QSIDFFGALRARVYDDEVRKW GVGV IG++LVNSKE+ PTF+QP+MT+EKLLEYGNM
Sbjct: 337 QSIDFFGALRARVYDDEVRKWAVGVGVERIGRNLVNSKESPPTFDQPKMTIEKLLEYGNM 396
Query: 301 IVQEQENVKRVQLA 314
+V EQENVKRV+L
Sbjct: 397 LVMEQENVKRVKLV 410
>gi|296086200|emb|CBI31641.3| unnamed protein product [Vitis vinifera]
Length = 411
Score = 577 bits (1487), Expect = e-162, Method: Compositional matrix adjust.
Identities = 277/337 (82%), Positives = 295/337 (87%), Gaps = 27/337 (8%)
Query: 1 MGTGTHYAVMSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPL 60
M GTHYAVMSSY+YIS GLR YNLDN +DG YIAPAFMDKLVVHITKNFM+LPNIKVPL
Sbjct: 101 MDAGTHYAVMSSYEYISTGLRQYNLDNNMDGFYIAPAFMDKLVVHITKNFMTLPNIKVPL 160
Query: 61 ILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKK 120
ILGIWGGKGQGKSFQCELVF+KMGINPIMMSAGELESGNAGEPAKLIRQRYREAADII+K
Sbjct: 161 ILGIWGGKGQGKSFQCELVFSKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIRK 220
Query: 121 GKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVP 180
GKMCCL INDLDAGAGR+GGTTQYTVNNQMVNATLMNIADNPT VQLPGMYNKEENPRVP
Sbjct: 221 GKMCCLFINDLDAGAGRLGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRVP 280
Query: 181 IIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPG 240
+IVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVC GIFR DNV +DIVKLVDTFPG
Sbjct: 281 VIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCTGIFRTDNVPVEDIVKLVDTFPG 340
Query: 241 QSIDFFGALRARVYDDEVRKWISGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNM 300
QSIDFFGALRARVYDD VR WI+G+GV + YG+M
Sbjct: 341 QSIDFFGALRARVYDDMVRDWIAGIGVDT---------------------------YGSM 373
Query: 301 IVQEQENVKRVQLADKYLSEAALGEANEDAIQSGNFY 337
+VQEQENVKRVQLADKYL+EAALG+ANEDAI+SG+F+
Sbjct: 374 LVQEQENVKRVQLADKYLNEAALGDANEDAIKSGSFF 410
>gi|168047149|ref|XP_001776034.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162672692|gb|EDQ59226.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 455
Score = 568 bits (1463), Expect = e-159, Method: Compositional matrix adjust.
Identities = 270/355 (76%), Positives = 300/355 (84%), Gaps = 20/355 (5%)
Query: 2 GTGTHYAVMSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLI 61
G GT MSS+DY+S RTYN DNT DGLYIAPAFMDKLV+H+ KNFM+LP IKVPLI
Sbjct: 101 GLGTQVVTMSSWDYVSTAQRTYNFDNTSDGLYIAPAFMDKLVIHVCKNFMNLPGIKVPLI 160
Query: 62 LGIWGGKGQGKSFQCELVFAKMGIN--------------------PIMMSAGELESGNAG 101
LG+WGGKGQGKSFQ ELV K+GIN PIMMSAGELESGNAG
Sbjct: 161 LGVWGGKGQGKSFQSELVMKKLGINSGRGLLSSLVTLSFEISMCHPIMMSAGELESGNAG 220
Query: 102 EPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADN 161
EPAKLIRQRYREAA II+KGKMCCL INDLDAGAGRMGGTTQYTVNNQMVNATLMNIAD+
Sbjct: 221 EPAKLIRQRYREAAAIIQKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADS 280
Query: 162 PTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIF 221
PT VQLPG+YNKEE PRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIF
Sbjct: 281 PTNVQLPGVYNKEEIPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIF 340
Query: 222 RNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISGVGVGSIGKSLVNSKEAA 281
R DN++DD++ K+VD FPGQSIDFFGALRARVYDDEVR WIS GV ++GK+LVNSK+
Sbjct: 341 RLDNISDDNVTKMVDMFPGQSIDFFGALRARVYDDEVRNWISATGVENLGKNLVNSKDGP 400
Query: 282 PTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAALGEANEDAIQSGNF 336
P F++P MT+EKL+EYG M+VQEQ+NVKRVQLA++YL+ AALG+AN DAI+ G F
Sbjct: 401 PEFKKPAMTIEKLMEYGQMLVQEQQNVKRVQLAEQYLNSAALGDANADAIKQGKF 455
>gi|116789808|gb|ABK25395.1| unknown [Picea sitchensis]
Length = 310
Score = 562 bits (1448), Expect = e-157, Method: Compositional matrix adjust.
Identities = 260/310 (83%), Positives = 293/310 (94%)
Query: 29 IDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPI 88
+DG YIAP+FMDKL+VHI+KNFM+LPNIKVPLILGIWGGKGQGKSFQCELVFAK+GINPI
Sbjct: 1 MDGYYIAPSFMDKLLVHISKNFMNLPNIKVPLILGIWGGKGQGKSFQCELVFAKLGINPI 60
Query: 89 MMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNN 148
MMSAGELESG+AGEPAKL+R+RYREA+DI+KKGKMC L INDLDAGAGRMG TTQYTVNN
Sbjct: 61 MMSAGELESGDAGEPAKLLRKRYREASDIVKKGKMCVLFINDLDAGAGRMGSTTQYTVNN 120
Query: 149 QMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAP 208
QMVNATLMNIADNPT VQLPGMYN+++NPRVPI+VTGNDFSTLYAPLIRDGRMEKFYWAP
Sbjct: 121 QMVNATLMNIADNPTNVQLPGMYNRQDNPRVPIVVTGNDFSTLYAPLIRDGRMEKFYWAP 180
Query: 209 TREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISGVGVG 268
TR+DRIGVC+GIFR DNV DD+V+LVDTFPGQSIDFFGALRARVYDDEVRKW++G G+
Sbjct: 181 TRDDRIGVCQGIFRADNVHPDDVVRLVDTFPGQSIDFFGALRARVYDDEVRKWVAGTGIQ 240
Query: 269 SIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAALGEANE 328
+IGK L+NSKE PTFE+P MT+EKLLEYGNM+V EQ+NVKR+QLADKY+SEAALG+ANE
Sbjct: 241 NIGKKLINSKEGPPTFEKPAMTIEKLLEYGNMLVGEQDNVKRLQLADKYMSEAALGDANE 300
Query: 329 DAIQSGNFYG 338
D+I+ G FYG
Sbjct: 301 DSIKRGTFYG 310
>gi|308368980|gb|AAG22094.3| ribulose 1,5-bisphosphate carboxylase/oxygenase activase precursor
[Zea mays]
Length = 305
Score = 556 bits (1432), Expect = e-156, Method: Compositional matrix adjust.
Identities = 261/304 (85%), Positives = 286/304 (94%)
Query: 34 IAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAG 93
IA FMDKLVVH++KNFM+LPNIKVPLILGIWGGKGQGKSFQCELVFAKMGI PIMMSAG
Sbjct: 1 IAKGFMDKLVVHLSKNFMTLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGITPIMMSAG 60
Query: 94 ELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNA 153
ELESGNAGEPAKLIRQRYREA+D+IKKGKM CL INDLDAGAGRMGGTTQYTVNNQMVNA
Sbjct: 61 ELESGNAGEPAKLIRQRYREASDLIKKGKMSCLFINDLDAGAGRMGGTTQYTVNNQMVNA 120
Query: 154 TLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDR 213
TLMNIADNPT VQLPGMYNKE+NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDR
Sbjct: 121 TLMNIADNPTNVQLPGMYNKEDNPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDR 180
Query: 214 IGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISGVGVGSIGKS 273
IGVCKGIFR D V ++ +V+LVDTFPGQSIDFFGALRARVYDDEVR+W+S GV +I +
Sbjct: 181 IGVCKGIFRTDGVDEEHVVQLVDTFPGQSIDFFGALRARVYDDEVRRWVSETGVENIARK 240
Query: 274 LVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAALGEANEDAIQS 333
LVNSKE PTFEQP++T+EKLLEYG+M+V EQENVKRVQLADKYL+EAALGEANEDA+++
Sbjct: 241 LVNSKEGPPTFEQPKITIEKLLEYGHMLVAEQENVKRVQLADKYLNEAALGEANEDAMKT 300
Query: 334 GNFY 337
G+F+
Sbjct: 301 GSFF 304
>gi|115392208|gb|ABI96906.1| chloroplast ribulose-1,5-bisphosphate carboxylase activase
[Triticum aestivum]
Length = 360
Score = 545 bits (1405), Expect = e-153, Method: Compositional matrix adjust.
Identities = 252/301 (83%), Positives = 281/301 (93%)
Query: 2 GTGTHYAVMSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLI 61
G GTH AV+SSY+Y+SQGL+ Y+ DNT+ G YIAPAFMDKLVVH++KNFM+LPNIK+P I
Sbjct: 60 GDGTHEAVLSSYEYVSQGLKKYDFDNTMGGFYIAPAFMDKLVVHLSKNFMTLPNIKIPRI 119
Query: 62 LGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKG 121
LGIWGGKGQGKSFQCELVFAKMGINPIM+SAGELESGNAGEPAKLIRQRYREAAD+IKKG
Sbjct: 120 LGIWGGKGQGKSFQCELVFAKMGINPIMLSAGELESGNAGEPAKLIRQRYREAADMIKKG 179
Query: 122 KMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPI 181
KMCCL INDLDAGAGRMGGTTQYTVNNQMVNATLMNIAD PT VQLPGMYNKEENPRVPI
Sbjct: 180 KMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADAPTNVQLPGMYNKEENPRVPI 239
Query: 182 IVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQ 241
+VTGNDFSTLYAPLIRDGRMEKFYWAPTR+DRIGVCKGIF+ DNV+D+ +VK+VDTFPGQ
Sbjct: 240 VVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRIGVCKGIFQTDNVSDESVVKIVDTFPGQ 299
Query: 242 SIDFFGALRARVYDDEVRKWISGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMI 301
SIDFFGALRARV DDEVRKW++ G+ +IGK LVNS++ TFEQP+MT+EKLLEYG+M+
Sbjct: 300 SIDFFGALRARVNDDEVRKWVTSTGIENIGKRLVNSRDGPVTFEQPKMTVEKLLEYGHML 359
Query: 302 V 302
V
Sbjct: 360 V 360
>gi|356624532|pdb|3T15|A Chain A, Structure Of Green-Type Rubisco Activase From Tobacco
gi|356624733|pdb|3ZW6|A Chain A, Model Of Hexameric Aaa Domain Arrangement Of Green-Type
Rubisco Activase From Tobacco.
gi|356624734|pdb|3ZW6|B Chain B, Model Of Hexameric Aaa Domain Arrangement Of Green-Type
Rubisco Activase From Tobacco.
gi|356624735|pdb|3ZW6|C Chain C, Model Of Hexameric Aaa Domain Arrangement Of Green-Type
Rubisco Activase From Tobacco.
gi|356624736|pdb|3ZW6|D Chain D, Model Of Hexameric Aaa Domain Arrangement Of Green-Type
Rubisco Activase From Tobacco.
gi|356624737|pdb|3ZW6|E Chain E, Model Of Hexameric Aaa Domain Arrangement Of Green-Type
Rubisco Activase From Tobacco.
gi|356624738|pdb|3ZW6|F Chain F, Model Of Hexameric Aaa Domain Arrangement Of Green-Type
Rubisco Activase From Tobacco
Length = 293
Score = 543 bits (1398), Expect = e-152, Method: Compositional matrix adjust.
Identities = 257/293 (87%), Positives = 272/293 (92%)
Query: 24 NLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKM 83
NLDN +DG YIAPAFMDKLVVHITKNF+ LPNIKVPLILGIWGGKGQGKSFQCELVF KM
Sbjct: 1 NLDNKLDGFYIAPAFMDKLVVHITKNFLKLPNIKVPLILGIWGGKGQGKSFQCELVFRKM 60
Query: 84 GINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQ 143
GINPIMMSAGELESGNAGEPAKLIRQRYREAA+II+KG MCCL INDLDAGAGRMGGTTQ
Sbjct: 61 GINPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKGNMCCLFINDLDAGAGRMGGTTQ 120
Query: 144 YTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEK 203
YTVNNQMVNATLMNIADNPT VQLPGMYNK+EN RVPIIVTGNDFSTLYAPLIRDGRMEK
Sbjct: 121 YTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFSTLYAPLIRDGRMEK 180
Query: 204 FYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWIS 263
FYWAPTREDRIGVC GIFR DNV +D+VK+VD FPGQSIDFFGALRARVYDDEVRKW+S
Sbjct: 181 FYWAPTREDRIGVCTGIFRTDNVPAEDVVKIVDNFPGQSIDFFGALRARVYDDEVRKWVS 240
Query: 264 GVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADK 316
G G+ IG L+NS + PTFEQP+MT+EKLLEYGNM+VQEQENVKRVQLADK
Sbjct: 241 GTGIEKIGDKLLNSFDGPPTFEQPKMTIEKLLEYGNMLVQEQENVKRVQLADK 293
>gi|3687652|gb|AAC62207.1| rubisco activase precursor [Datisca glomerata]
Length = 373
Score = 525 bits (1352), Expect = e-146, Method: Compositional matrix adjust.
Identities = 252/274 (91%), Positives = 260/274 (94%), Gaps = 1/274 (0%)
Query: 1 MGTGTHYAVMSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPL 60
M TGTHYAVMSSY+Y+S GLR Y LDN +DG YIAPAFMDKLVVHITKNFM+LPNIKVPL
Sbjct: 101 MQTGTHYAVMSSYEYLSTGLRQY-LDNNMDGFYIAPAFMDKLVVHITKNFMTLPNIKVPL 159
Query: 61 ILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKK 120
ILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQR REAADIIKK
Sbjct: 160 ILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRCREAADIIKK 219
Query: 121 GKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVP 180
GKM CL INDLDAGAGR+GGTTQYTVNNQMVNATLMNIADNPT VQLPGMYNKEENPRVP
Sbjct: 220 GKMSCLFINDLDAGAGRLGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRVP 279
Query: 181 IIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPG 240
IIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVC GIFR+DNVA +DIVKLVDTFPG
Sbjct: 280 IIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCTGIFRSDNVAKEDIVKLVDTFPG 339
Query: 241 QSIDFFGALRARVYDDEVRKWISGVGVGSIGKSL 274
QSIDFFGALRARVYDDEVRKWISGVGV +GKSL
Sbjct: 340 QSIDFFGALRARVYDDEVRKWISGVGVQDVGKSL 373
>gi|410927414|gb|AFV93495.1| chloroplast ribulose bisphosphate carboxylase/oxygenase activase
beta1, partial [Gossypium barbadense]
Length = 296
Score = 523 bits (1347), Expect = e-146, Method: Compositional matrix adjust.
Identities = 251/269 (93%), Positives = 256/269 (95%)
Query: 1 MGTGTHYAVMSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPL 60
M GTHYAVMSSY+YISQGLRTY+LDN +DG YIAPAFMDKLVVHITKN+M+LPNIKVPL
Sbjct: 28 MNDGTHYAVMSSYEYISQGLRTYDLDNNMDGFYIAPAFMDKLVVHITKNYMTLPNIKVPL 87
Query: 61 ILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKK 120
ILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKK
Sbjct: 88 ILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKK 147
Query: 121 GKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVP 180
GKMCCL INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPT VQLPGMYNKEENPRVP
Sbjct: 148 GKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRVP 207
Query: 181 IIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPG 240
IIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVC GIFR DNV DDIVKLVDTFPG
Sbjct: 208 IIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCTGIFRTDNVPVDDIVKLVDTFPG 267
Query: 241 QSIDFFGALRARVYDDEVRKWISGVGVGS 269
QSIDFFGALRARVYDDEVRKWI VGV S
Sbjct: 268 QSIDFFGALRARVYDDEVRKWIGEVGVNS 296
>gi|410927420|gb|AFV93496.1| chloroplast ribulose bisphosphate carboxylase/oxygenase activase
beta2, partial [Gossypium barbadense]
Length = 296
Score = 522 bits (1344), Expect = e-145, Method: Compositional matrix adjust.
Identities = 249/269 (92%), Positives = 256/269 (95%)
Query: 1 MGTGTHYAVMSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPL 60
M GTHYAVMSSY+Y+SQGLRTY+LDN +DG YIAPAFMDKLVVHITKNFM+LPNIKVPL
Sbjct: 28 MNDGTHYAVMSSYEYLSQGLRTYDLDNNMDGFYIAPAFMDKLVVHITKNFMTLPNIKVPL 87
Query: 61 ILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKK 120
ILG+WGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKK
Sbjct: 88 ILGVWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKK 147
Query: 121 GKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVP 180
GKMCCL INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPT VQLPGMYNKEENPRVP
Sbjct: 148 GKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRVP 207
Query: 181 IIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPG 240
IIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVC GIFR DNV DD+VKLVDTFPG
Sbjct: 208 IIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCTGIFRTDNVPVDDLVKLVDTFPG 267
Query: 241 QSIDFFGALRARVYDDEVRKWISGVGVGS 269
QSIDFFGALRARVYDDEVRKWI VGV S
Sbjct: 268 QSIDFFGALRARVYDDEVRKWIGEVGVNS 296
>gi|342360007|gb|AEL29575.1| chloroplast rubisco activase [Chlorella pyrenoidosa]
Length = 413
Score = 509 bits (1310), Expect = e-142, Method: Compositional matrix adjust.
Identities = 237/320 (74%), Positives = 273/320 (85%), Gaps = 2/320 (0%)
Query: 5 THYAVMSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGI 64
TH A+MSS DY+S R +N N DG YI+PAF+DK+ +H+ KNFM LP IKVPLILGI
Sbjct: 83 THNAIMSSTDYLSTAARNFN--NIEDGFYISPAFLDKMSIHVAKNFMDLPKIKVPLILGI 140
Query: 65 WGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMC 124
WGGKGQGK+FQC L + K+GI+PI+MSAGELESGNAGEPAKLIRQRYREA+DIIKKG+MC
Sbjct: 141 WGGKGQGKTFQCNLAYKKLGISPIVMSAGELESGNAGEPAKLIRQRYREASDIIKKGRMC 200
Query: 125 CLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVT 184
L INDLDAGAGRMG TQYTVNNQMVNATLMNIAD+PT VQLPG+Y EE PRVPI+ T
Sbjct: 201 SLFINDLDAGAGRMGDATQYTVNNQMVNATLMNIADSPTNVQLPGVYKNEEIPRVPIVCT 260
Query: 185 GNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSID 244
GNDFSTLYAPLIRDGRMEK+YW PTREDRIGVC GIF++DNV D+ KLVD FPGQSID
Sbjct: 261 GNDFSTLYAPLIRDGRMEKYYWNPTREDRIGVCMGIFQHDNVDRADVEKLVDAFPGQSID 320
Query: 245 FFGALRARVYDDEVRKWISGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQE 304
FFGALRARVYDD+VR+WI+G GV +IGK L+NS+E FE+P M + L++YGNM+V+E
Sbjct: 321 FFGALRARVYDDKVREWITGTGVENIGKRLINSREGKVEFEKPSMNLSTLMQYGNMLVEE 380
Query: 305 QENVKRVQLADKYLSEAALG 324
QENVKRVQLAD+Y+S AAL
Sbjct: 381 QENVKRVQLADEYMSGAALA 400
>gi|384253108|gb|EIE26583.1| Rubisco activase [Coccomyxa subellipsoidea C-169]
Length = 421
Score = 499 bits (1286), Expect = e-139, Method: Compositional matrix adjust.
Identities = 234/320 (73%), Positives = 273/320 (85%), Gaps = 2/320 (0%)
Query: 4 GTHYAVMSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILG 63
GTH A++SS +Y+SQ RT L+N DG YI+P F+DK+ +H+ KNF+ LP IKVPLILG
Sbjct: 94 GTHNAILSSEEYLSQAQRT--LNNIEDGFYISPPFLDKISIHVAKNFLDLPKIKVPLILG 151
Query: 64 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 123
IWGGKGQGK+FQC L F K+ INPI+MSAGELESGNAGEPAKL+RQRYREA+D+IKKGKM
Sbjct: 152 IWGGKGQGKTFQCNLAFKKLDINPIVMSAGELESGNAGEPAKLVRQRYREASDVIKKGKM 211
Query: 124 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 183
L INDLDAGAGRMG TQYTVNNQMVNATLMNIADNPT VQLPG+Y +EE PRVP+I
Sbjct: 212 SSLFINDLDAGAGRMGAGTQYTVNNQMVNATLMNIADNPTNVQLPGVYKQEEIPRVPVIC 271
Query: 184 TGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSI 243
TGNDFSTLYAPLIRDGRMEKFYWAP+R+DR+GVC GIF++D V D+ LVDTFPGQSI
Sbjct: 272 TGNDFSTLYAPLIRDGRMEKFYWAPSRDDRVGVCMGIFQHDGVNRTDVEHLVDTFPGQSI 331
Query: 244 DFFGALRARVYDDEVRKWISGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQ 303
DFFGALRARVYDD+VR+++S +G+ +IGK LVNS+EA TFE+P M + LL+YGN++V
Sbjct: 332 DFFGALRARVYDDKVREFVSTIGLENIGKRLVNSREAKVTFEKPEMDLNTLLKYGNLLVD 391
Query: 304 EQENVKRVQLADKYLSEAAL 323
EQENVKRVQLAD YLS A L
Sbjct: 392 EQENVKRVQLADSYLSGAEL 411
>gi|23320705|gb|AAN15946.1| rubisco activase, partial [Medicago sativa]
Length = 270
Score = 499 bits (1285), Expect = e-139, Method: Compositional matrix adjust.
Identities = 237/269 (88%), Positives = 253/269 (94%)
Query: 68 KGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLM 127
+GQGKSFQ ELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREA+DII+KGKMCCL
Sbjct: 2 EGQGKSFQAELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREASDIIRKGKMCCLF 61
Query: 128 INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGND 187
INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPT VQLPGMYNKE+N RVPIIVTGND
Sbjct: 62 INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEDNARVPIIVTGND 121
Query: 188 FSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFG 247
FSTLYAPLIRDGRMEKFYWAPTREDRIGVC GIFR+DN+A DDIVK+VDTFPGQSIDFFG
Sbjct: 122 FSTLYAPLIRDGRMEKFYWAPTREDRIGVCIGIFRHDNIAKDDIVKIVDTFPGQSIDFFG 181
Query: 248 ALRARVYDDEVRKWISGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQEN 307
ALRARVYDDEVRKW+SGVG+ +IGK LVNSKE P FEQP+MT+EKLLEYGNM+V EQEN
Sbjct: 182 ALRARVYDDEVRKWVSGVGIETIGKKLVNSKEGPPVFEQPKMTLEKLLEYGNMLVSEQEN 241
Query: 308 VKRVQLADKYLSEAALGEANEDAIQSGNF 336
VKRVQLADKYL AALG+AN+DAI+ G F
Sbjct: 242 VKRVQLADKYLEGAALGDANQDAIKEGKF 270
>gi|307111891|gb|EFN60125.1| hypothetical protein CHLNCDRAFT_133490 [Chlorella variabilis]
Length = 419
Score = 499 bits (1285), Expect = e-139, Method: Compositional matrix adjust.
Identities = 234/331 (70%), Positives = 275/331 (83%), Gaps = 2/331 (0%)
Query: 4 GTHYAVMSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILG 63
GTH A++SS DY+S R +N N DG YI+PAF+DK+ +H+ KNF+ LP IKVPLILG
Sbjct: 87 GTHNAILSSQDYLSTAQRNFN--NIEDGFYISPAFLDKISIHVAKNFLDLPKIKVPLILG 144
Query: 64 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 123
IWGGKGQGK+FQC L + K+GI+PI+MSAGELESGNAGEPAKLIRQRYREA+DIIKKG+M
Sbjct: 145 IWGGKGQGKTFQCNLAYKKLGISPIVMSAGELESGNAGEPAKLIRQRYREASDIIKKGRM 204
Query: 124 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 183
L INDLDAGAGRMG TQYTVNNQMVNATLMNIADNPT VQLPG+Y EE PRVPI+
Sbjct: 205 SSLFINDLDAGAGRMGDATQYTVNNQMVNATLMNIADNPTNVQLPGVYKNEEIPRVPIVC 264
Query: 184 TGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSI 243
TGNDFSTLYAPLIRDGRMEK+YW PTREDR+GVC GIF++DNV D+ LVD FPGQSI
Sbjct: 265 TGNDFSTLYAPLIRDGRMEKYYWNPTREDRVGVCMGIFQHDNVDRADVETLVDAFPGQSI 324
Query: 244 DFFGALRARVYDDEVRKWISGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQ 303
DFFGALRARVYDD+VR+WI G GV +IGK LVNS+E F++P M + L+ YGN++V+
Sbjct: 325 DFFGALRARVYDDKVREWIQGTGVENIGKRLVNSREGKVEFDKPPMPLSTLMNYGNLLVE 384
Query: 304 EQENVKRVQLADKYLSEAALGEANEDAIQSG 334
EQENVKRVQLAD+Y+S AAL ++ ++ G
Sbjct: 385 EQENVKRVQLADEYMSGAALAGSSGSSLPEG 415
>gi|149392725|gb|ABR26165.1| ribulose bisphosphate carboxylase/oxygenase activase [Oryza sativa
Indica Group]
Length = 273
Score = 498 bits (1282), Expect = e-138, Method: Compositional matrix adjust.
Identities = 235/270 (87%), Positives = 256/270 (94%)
Query: 71 GKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMIND 130
GKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCL IND
Sbjct: 1 GKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFIND 60
Query: 131 LDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFST 190
LDAGAGRMGGTTQYTVNNQMVNATLMNIADNPT VQLPGMYNKE+NPRVPIIVTGNDFST
Sbjct: 61 LDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEDNPRVPIIVTGNDFST 120
Query: 191 LYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALR 250
LYAPLIRDGRMEKFYWAPTR+DR+GVCKGIFR DNV D+DIVK+VD+FPGQSIDFFGALR
Sbjct: 121 LYAPLIRDGRMEKFYWAPTRDDRVGVCKGIFRTDNVPDEDIVKIVDSFPGQSIDFFGALR 180
Query: 251 ARVYDDEVRKWISGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKR 310
ARVYDDEVRKW+S GV +IGK LVNS+E P FEQP+MT+EKL+EYG M+V+EQENVKR
Sbjct: 181 ARVYDDEVRKWVSDTGVENIGKRLVNSREGPPEFEQPKMTIEKLMEYGYMLVKEQENVKR 240
Query: 311 VQLADKYLSEAALGEANEDAIQSGNFYGKA 340
VQLA++YLSEAALG+AN DA+++G+FYG A
Sbjct: 241 VQLAEQYLSEAALGDANSDAMKTGSFYGSA 270
>gi|302840850|ref|XP_002951971.1| hypothetical protein VOLCADRAFT_105291 [Volvox carteri f.
nagariensis]
gi|300262872|gb|EFJ47076.1| hypothetical protein VOLCADRAFT_105291 [Volvox carteri f.
nagariensis]
Length = 409
Score = 493 bits (1269), Expect = e-137, Method: Compositional matrix adjust.
Identities = 235/320 (73%), Positives = 268/320 (83%), Gaps = 3/320 (0%)
Query: 4 GTHYAVMSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILG 63
GTH AV+SS +Y+SQ ++N N DG YI+PAF+DK+ +HI KNFM LP IKVPLILG
Sbjct: 78 GTHNAVLSSTEYLSQARASFN--NIEDGFYISPAFLDKMTIHIAKNFMDLPKIKVPLILG 135
Query: 64 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 123
IWGGKGQGK+FQC L + K+GI+PI+MSAGELESGNAGEPAKLIR RYREA+DIIKKGKM
Sbjct: 136 IWGGKGQGKTFQCALAYKKLGISPIVMSAGELESGNAGEPAKLIRTRYREASDIIKKGKM 195
Query: 124 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 183
C L INDLDAGAGRMG TTQYTVNNQMVNATLMNIADNPT VQLPG+Y EE PRVPI+
Sbjct: 196 CSLFINDLDAGAGRMGDTTQYTVNNQMVNATLMNIADNPTNVQLPGVYKNEEIPRVPIVC 255
Query: 184 TGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSI 243
TGNDFSTLYAPLIRDGRMEK+YW PTREDRIGVC GIF+ DNV+ D+ +LVDTFPGQSI
Sbjct: 256 TGNDFSTLYAPLIRDGRMEKYYWNPTREDRIGVCMGIFQEDNVSRGDVERLVDTFPGQSI 315
Query: 244 DFFGALRARVYDDEVRKWISGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQ 303
DFFGALRARVYDD VRKWI+ VG+ IG LVN ++ +F + M+++ LL+YG +V
Sbjct: 316 DFFGALRARVYDDMVRKWIAEVGIEGIGSKLVNGRQKV-SFPKVSMSLDVLLKYGRALVD 374
Query: 304 EQENVKRVQLADKYLSEAAL 323
EQENVKRVQLAD YLS A L
Sbjct: 375 EQENVKRVQLADAYLSGAEL 394
>gi|312064704|gb|ADQ27442.1| chloroplast Rubisco activase [Solanum tuberosum]
Length = 359
Score = 490 bits (1262), Expect = e-136, Method: Compositional matrix adjust.
Identities = 225/257 (87%), Positives = 244/257 (94%)
Query: 2 GTGTHYAVMSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLI 61
GTGTH+A+M+SY+Y+SQ L+TY +DN +DG YIAP+FMDKL VHITKNF+SLPNIKVPLI
Sbjct: 103 GTGTHHAIMNSYEYVSQALKTYQMDNKLDGFYIAPSFMDKLAVHITKNFLSLPNIKVPLI 162
Query: 62 LGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKG 121
LG+WGGKGQGKSFQCELVF KMGINPIMMSAGELESGNAGEPAKLIRQRYREAA+II+KG
Sbjct: 163 LGVWGGKGQGKSFQCELVFRKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKG 222
Query: 122 KMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPI 181
MCCL INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPT VQLPGMYNK+EN RVPI
Sbjct: 223 NMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENCRVPI 282
Query: 182 IVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQ 241
IVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFR DNV ++ +VK+VD+FPGQ
Sbjct: 283 IVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRTDNVPEEAVVKIVDSFPGQ 342
Query: 242 SIDFFGALRARVYDDEV 258
SIDFFGALRARVYDDEV
Sbjct: 343 SIDFFGALRARVYDDEV 359
>gi|154259484|gb|ABS72022.1| putative ribulose-1,5-bisphosphate carboxylase/oxygenase activase
[Olea europaea]
Length = 261
Score = 486 bits (1251), Expect = e-135, Method: Compositional matrix adjust.
Identities = 229/260 (88%), Positives = 246/260 (94%)
Query: 112 REAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMY 171
REAADIIKKGKMCCL INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPT VQLPGMY
Sbjct: 1 REAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMY 60
Query: 172 NKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDI 231
NKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFR D+V D+ +
Sbjct: 61 NKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRTDDVPDEHV 120
Query: 232 VKLVDTFPGQSIDFFGALRARVYDDEVRKWISGVGVGSIGKSLVNSKEAAPTFEQPRMTM 291
VKLVD+FPGQSIDFFGALRARVYDDEVRKWI GVGV +IGK LVNS+E PTF+QP+M++
Sbjct: 121 VKLVDSFPGQSIDFFGALRARVYDDEVRKWIGGVGVDNIGKKLVNSREGPPTFDQPKMSL 180
Query: 292 EKLLEYGNMIVQEQENVKRVQLADKYLSEAALGEANEDAIQSGNFYGKAAQQMNVPVPEG 351
EKLLEYGNM+VQEQENVKRVQLAD+YLS AALG+AN+DA+QSG+FYGKAAQQ+ VPVPEG
Sbjct: 181 EKLLEYGNMLVQEQENVKRVQLADQYLSSAALGDANKDAMQSGSFYGKAAQQVGVPVPEG 240
Query: 352 CTDPTAENFDPTARSDDGSC 371
CTDP A NFDPTARSDDGSC
Sbjct: 241 CTDPNASNFDPTARSDDGSC 260
>gi|159468147|ref|XP_001692244.1| rubisco activase [Chlamydomonas reinhardtii]
gi|38532373|gb|AAR23425.1| rubisco activase [Chlamydomonas reinhardtii]
gi|158278430|gb|EDP04194.1| rubisco activase [Chlamydomonas reinhardtii]
Length = 408
Score = 480 bits (1236), Expect = e-133, Method: Compositional matrix adjust.
Identities = 231/322 (71%), Positives = 265/322 (82%), Gaps = 7/322 (2%)
Query: 4 GTHYAVMSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILG 63
GTH AV+SS +Y+SQ ++N N DG YI+PAF+DK+ +HI KNFM LP IKVPLILG
Sbjct: 78 GTHNAVLSSQEYLSQSRASFN--NIEDGFYISPAFLDKMTIHIAKNFMDLPKIKVPLILG 135
Query: 64 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 123
IWGGKGQGK+FQC L + K+GI PI+MSAGELESGNAGEPAKLIR RYREA+DIIKKG+M
Sbjct: 136 IWGGKGQGKTFQCALAYKKLGIAPIVMSAGELESGNAGEPAKLIRTRYREASDIIKKGRM 195
Query: 124 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 183
C L INDLDAGAGRMG TTQYTVNNQMVNATLMNIADNPT VQLPG+Y EE PRVPI+
Sbjct: 196 CSLFINDLDAGAGRMGDTTQYTVNNQMVNATLMNIADNPTNVQLPGVYKNEEIPRVPIVC 255
Query: 184 TGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSI 243
TGNDFSTLYAPLIRDGRMEK+YW PTREDRIGVC GIF+ DNV ++ LVDTFPGQSI
Sbjct: 256 TGNDFSTLYAPLIRDGRMEKYYWNPTREDRIGVCMGIFQEDNVQRREVENLVDTFPGQSI 315
Query: 244 DFFGALRARVYDDEVRKWISGVGVGSIGKSLVNSKEAAPTFEQPRMTME--KLLEYGNMI 301
DFFGALRARVYDD VR+WI+ GV IG+ LVN+++ P+++M+ L++YG +
Sbjct: 316 DFFGALRARVYDDMVRQWITDTGVDKIGQQLVNARQKVAM---PKVSMDLNVLIKYGKSL 372
Query: 302 VQEQENVKRVQLADKYLSEAAL 323
V EQENVKRVQLAD YLS A L
Sbjct: 373 VDEQENVKRVQLADAYLSGAEL 394
>gi|132167|sp|P23489.1|RCA_CHLRE RecName: Full=Ribulose bisphosphate carboxylase/oxygenase activase,
chloroplastic; Short=RA; Short=RuBisCO activase; Flags:
Precursor
gi|167434|gb|AAA33091.1| ribulose 1,5-bisphosphate carboxylase/oxygenase activase
[Chlamydomonas reinhardtii]
gi|227783|prf||1710353A RuBisCO activase
Length = 408
Score = 480 bits (1235), Expect = e-133, Method: Compositional matrix adjust.
Identities = 231/322 (71%), Positives = 265/322 (82%), Gaps = 7/322 (2%)
Query: 4 GTHYAVMSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILG 63
GTH AV+SS +Y+SQ ++N N DG YI+PAF+DK+ +HI KNFM LP IKVPLILG
Sbjct: 78 GTHNAVLSSQEYLSQSRASFN--NIEDGFYISPAFLDKMTIHIAKNFMDLPKIKVPLILG 135
Query: 64 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 123
IWGGKGQGK+FQC L + K+GI PI+MSAGELESGNAGEPAKLIR RYREA+DIIKKG+M
Sbjct: 136 IWGGKGQGKTFQCALAYKKLGIAPIVMSAGELESGNAGEPAKLIRTRYREASDIIKKGRM 195
Query: 124 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 183
C L INDLDAGAGRMG TTQYTVNNQMVNATLMNIADNPT VQLPG+Y EE PRVPI+
Sbjct: 196 CSLFINDLDAGAGRMGDTTQYTVNNQMVNATLMNIADNPTNVQLPGVYKNEEIPRVPIVC 255
Query: 184 TGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSI 243
TGNDFSTLYAPLIRDGRMEK+YW PTREDRIGVC GIF+ DNV ++ LVDTFPGQSI
Sbjct: 256 TGNDFSTLYAPLIRDGRMEKYYWNPTREDRIGVCMGIFQEDNVQRREVENLVDTFPGQSI 315
Query: 244 DFFGALRARVYDDEVRKWISGVGVGSIGKSLVNSKEAAPTFEQPRMTME--KLLEYGNMI 301
DFFGALRARVYDD VR+WI+ GV IG+ LVN+++ P+++M+ L++YG +
Sbjct: 316 DFFGALRARVYDDMVRQWITDTGVDKIGQQLVNARQKVAM---PKVSMDLNVLIKYGKSL 372
Query: 302 VQEQENVKRVQLADKYLSEAAL 323
V EQENVKRVQLAD YLS A L
Sbjct: 373 VDEQENVKRVQLADAYLSGAEL 394
>gi|1805719|emb|CAA71667.1| Rubisco activase [Chlorococcum littorale]
Length = 403
Score = 479 bits (1232), Expect = e-132, Method: Compositional matrix adjust.
Identities = 224/322 (69%), Positives = 265/322 (82%), Gaps = 2/322 (0%)
Query: 2 GTGTHYAVMSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLI 61
G GTH AV+SS DY+S R +N N DG YI+PAF+DK+ +H+ KNFM LP IKVPLI
Sbjct: 70 GGGTHSAVLSSEDYLSTASRNFN--NVEDGFYISPAFLDKMTIHVAKNFMDLPKIKVPLI 127
Query: 62 LGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKG 121
LGIWGGKGQGK+FQC L + K+GI+PI+MSAGELESGNAGEPAKLIRQRYREA+D +KKG
Sbjct: 128 LGIWGGKGQGKTFQCALAYKKLGISPIVMSAGELESGNAGEPAKLIRQRYREASDSVKKG 187
Query: 122 KMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPI 181
KMC L INDLDAGAGRMG TQYTVNNQMVNATLMNIADNPT VQLPG+Y + + PRVPI
Sbjct: 188 KMCSLFINDLDAGAGRMGMGTQYTVNNQMVNATLMNIADNPTNVQLPGVYKEVQIPRVPI 247
Query: 182 IVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQ 241
+ TGNDFSTLYAPLIRDGRMEK+YW PTREDRIGVC GIF+ DNV ++ LVD FPGQ
Sbjct: 248 VCTGNDFSTLYAPLIRDGRMEKYYWNPTREDRIGVCMGIFQEDNVNRGEVEVLVDAFPGQ 307
Query: 242 SIDFFGALRARVYDDEVRKWISGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMI 301
SIDFFGALRARVYDD+VR+++ GV ++ K L+NS+E FE+P M ++ L++YG +
Sbjct: 308 SIDFFGALRARVYDDKVREFVKNTGVENLSKRLINSREGKVVFEKPSMNLDILMKYGKFL 367
Query: 302 VQEQENVKRVQLADKYLSEAAL 323
EQENVKRVQLA++Y+ A+L
Sbjct: 368 TNEQENVKRVQLAEEYMMGASL 389
>gi|149941202|emb|CAO02533.1| putative rubisco activase [Vigna unguiculata]
Length = 251
Score = 476 bits (1226), Expect = e-132, Method: Compositional matrix adjust.
Identities = 225/250 (90%), Positives = 237/250 (94%)
Query: 15 YISQGLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSF 74
Y+S GL+TYN DN DG YIAPAFMDKLVVHITKNFM+LPNIKVPLILGIWGGKGQGKSF
Sbjct: 2 YLSTGLKTYNFDNMKDGYYIAPAFMDKLVVHITKNFMTLPNIKVPLILGIWGGKGQGKSF 61
Query: 75 QCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAG 134
QCELVFAKMGINPI+MSAGELESGNAGEPAKLIRQRYREAADIIKKGKMC L INDLDAG
Sbjct: 62 QCELVFAKMGINPIVMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCALFINDLDAG 121
Query: 135 AGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAP 194
AGR+GGTTQYTVNNQMVNATLMNIADNPT VQLPGMYNKEEN RVPIIVTGNDFSTLYAP
Sbjct: 122 AGRLGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENLRVPIIVTGNDFSTLYAP 181
Query: 195 LIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVY 254
LIRDGRMEKFYWAPTR+DR+GVCKGIFR D V ++++ KLVDTFPGQSIDFFGALRARVY
Sbjct: 182 LIRDGRMEKFYWAPTRDDRVGVCKGIFRTDGVPEEEVTKLVDTFPGQSIDFFGALRARVY 241
Query: 255 DDEVRKWISG 264
DDEVRKW+SG
Sbjct: 242 DDEVRKWVSG 251
>gi|3687676|gb|AAC62215.1| rubisco activase precursor [Datisca glomerata]
Length = 244
Score = 476 bits (1226), Expect = e-132, Method: Compositional matrix adjust.
Identities = 229/244 (93%), Positives = 234/244 (95%)
Query: 31 GLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMM 90
G YIAPAFMDKLVVHITKNFM+ PNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMM
Sbjct: 1 GFYIAPAFMDKLVVHITKNFMTFPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMM 60
Query: 91 SAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQM 150
SAGELESGNAGEPAKLIRQR REAADIIKKGKM CL INDLDAGAGR+GGTTQYTVNNQM
Sbjct: 61 SAGELESGNAGEPAKLIRQRCREAADIIKKGKMSCLFINDLDAGAGRLGGTTQYTVNNQM 120
Query: 151 VNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTR 210
VNATLMNIADNPT VQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTR
Sbjct: 121 VNATLMNIADNPTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTR 180
Query: 211 EDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISGVGVGSI 270
EDRIGVC GIFR+DNVA +DIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISGVGV +
Sbjct: 181 EDRIGVCTGIFRSDNVAKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISGVGVQDV 240
Query: 271 GKSL 274
GKSL
Sbjct: 241 GKSL 244
>gi|410927496|gb|AFV93500.1| chloroplast ribulose bisphosphate carboxylase/oxygenase activase
beta2, partial [Gossypium barbadense]
Length = 250
Score = 476 bits (1224), Expect = e-131, Method: Compositional matrix adjust.
Identities = 226/243 (93%), Positives = 233/243 (95%)
Query: 1 MGTGTHYAVMSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPL 60
M GTHYAVMSSY+Y+SQGLRTY+LDN +DG YIAPAFMDKLVVHITKNFM+LPNIKVPL
Sbjct: 8 MNDGTHYAVMSSYEYLSQGLRTYDLDNNMDGFYIAPAFMDKLVVHITKNFMTLPNIKVPL 67
Query: 61 ILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKK 120
ILG+WGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKK
Sbjct: 68 ILGVWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKK 127
Query: 121 GKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVP 180
GKMCCL INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPT VQLPGMYNKEENPRVP
Sbjct: 128 GKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRVP 187
Query: 181 IIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPG 240
IIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVC GIFR DNV DD+VKLVDTFPG
Sbjct: 188 IIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCTGIFRTDNVPVDDLVKLVDTFPG 247
Query: 241 QSI 243
QSI
Sbjct: 248 QSI 250
>gi|412985893|emb|CCO17093.1| predicted protein [Bathycoccus prasinos]
Length = 480
Score = 473 bits (1216), Expect = e-131, Method: Compositional matrix adjust.
Identities = 229/329 (69%), Positives = 270/329 (82%), Gaps = 6/329 (1%)
Query: 4 GTHYAVMSSYDYISQGLRTYNLDN-TIDG--LYIAPAFMDKLVVHITKNFMSLPNIKVPL 60
GTH AVMSS DYISQG + NLDN ++DG YI+P+F+DK VH+ KNFM LP IKVPL
Sbjct: 145 GTHNAVMSSTDYISQGQK--NLDNLSVDGNNYYISPSFLDKTAVHVAKNFMDLPKIKVPL 202
Query: 61 ILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKK 120
ILG+WGGKGQGK+FQ L+FAK+GI+PI+MSAGELESGNAGEPAKL+RQRYREA+DI+KK
Sbjct: 203 ILGVWGGKGQGKTFQSNLIFAKLGISPIVMSAGELESGNAGEPAKLVRQRYREASDIVKK 262
Query: 121 GKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVP 180
GK+ L INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPT VQLPG Y E PRVP
Sbjct: 263 GKLSTLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGQYEVVEIPRVP 322
Query: 181 IIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPG 240
+I TGNDFSTLYAPL+RDGRM+KFYWAPT EDR+G+ GIF+ D V + D+ LV+ F G
Sbjct: 323 VIATGNDFSTLYAPLVRDGRMDKFYWAPTFEDRVGIANGIFKADGVDEADVRSLVEAFDG 382
Query: 241 QSIDFFGALRARVYDDEVRKWISGVGVGSIGKSLVNSKEAAP-TFEQPRMTMEKLLEYGN 299
QSIDFFGALRARVYDD+VR++I +G+ +IGK LVN ++ +F+ P M++E LLEYG
Sbjct: 383 QSIDFFGALRARVYDDKVREFIQEMGLENIGKRLVNVRKGEEVSFDAPAMSIEILLEYGK 442
Query: 300 MIVQEQENVKRVQLADKYLSEAALGEANE 328
+ EQENVKRVQLAD YL A L ++E
Sbjct: 443 ALENEQENVKRVQLADAYLDGAVLAGSDE 471
>gi|308802948|ref|XP_003078787.1| RuBisCO activase (IC) [Ostreococcus tauri]
gi|116057240|emb|CAL51667.1| RuBisCO activase (IC) [Ostreococcus tauri]
Length = 407
Score = 469 bits (1206), Expect = e-129, Method: Compositional matrix adjust.
Identities = 229/333 (68%), Positives = 266/333 (79%), Gaps = 7/333 (2%)
Query: 4 GTHYAVMSSYDYISQGLRTYN-LDN-TIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLI 61
GTH AVMSS DY+S G++TY+ DN T + YI+ ++MDK+VVHI KNFM LP IKVPLI
Sbjct: 69 GTHNAVMSSQDYLSAGMKTYDGHDNITAENFYISKSYMDKVVVHIAKNFMQLPKIKVPLI 128
Query: 62 LGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKG 121
LG+WGGKGQGK+FQ +L+F K+GINPI+MSAGELESGNAGEPAKL+RQRYREA+DI+KKG
Sbjct: 129 LGVWGGKGQGKTFQSDLIFRKLGINPIVMSAGELESGNAGEPAKLVRQRYREASDIVKKG 188
Query: 122 KMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPI 181
+M L INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPT VQLPG Y E PRVPI
Sbjct: 189 RMSTLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGQYEVIEIPRVPI 248
Query: 182 IVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQ 241
I TGNDFSTLYAPL+RDGRM+KFYW+PT EDR+G+ GIF D V+ +D+ LV TF GQ
Sbjct: 249 IATGNDFSTLYAPLVRDGRMDKFYWSPTFEDRVGIANGIFMADGVSPEDVEVLVSTFEGQ 308
Query: 242 SIDFFGALRARVYDDEVRKWISGVGVGSIGKSLVNSKEAAP-TFEQPRMTMEKLLEYGNM 300
SIDFFGALRARVYDD+VR +I VG +GK L+N ++ FE P MT+E LL YG
Sbjct: 309 SIDFFGALRARVYDDKVRDFILSVGYDQLGKRLINPRKGEEVVFEPPAMTLEVLLAYGKE 368
Query: 301 IVQEQENVKRVQLADKYLSEAAL----GEANED 329
I EQEN+KR+QLAD YL A L G +N D
Sbjct: 369 IENEQENIKRIQLADAYLDGAVLAGSGGSSNTD 401
>gi|255075671|ref|XP_002501510.1| ribulose bisphosphate carboxylase/oxygenase activase,chloroplast
precursor [Micromonas sp. RCC299]
gi|226516774|gb|ACO62768.1| ribulose bisphosphate carboxylase/oxygenase activase,chloroplast
precursor [Micromonas sp. RCC299]
Length = 413
Score = 465 bits (1196), Expect = e-128, Method: Compositional matrix adjust.
Identities = 225/321 (70%), Positives = 260/321 (80%), Gaps = 2/321 (0%)
Query: 4 GTHYAVMSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILG 63
GTH AVMSS DY+S G + + + T +G YI+ FMD+ VHI KNFM LP IKVPLILG
Sbjct: 79 GTHNAVMSSSDYVSDGFKDVS-NMTDEGYYISKGFMDRFCVHIAKNFMDLPKIKVPLILG 137
Query: 64 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 123
+WGGKGQGK+FQ L+F K+G+ PI+MSAGELESGNAGEPAKLIRQRYREA+DIIKKG+M
Sbjct: 138 VWGGKGQGKTFQSMLIFKKLGVGPIVMSAGELESGNAGEPAKLIRQRYREASDIIKKGRM 197
Query: 124 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 183
L INDLDAGAGRMGG+TQYTVNNQMVNATLMN+ADNPT VQLPG Y EE PRVPII
Sbjct: 198 STLFINDLDAGAGRMGGSTQYTVNNQMVNATLMNLADNPTNVQLPGQYQVEEIPRVPIIA 257
Query: 184 TGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSI 243
TGNDFSTLYAPLIRDGRMEK+YW+P+ EDR+GV GIF+ D VA+ D+ LV TF GQSI
Sbjct: 258 TGNDFSTLYAPLIRDGRMEKYYWSPSFEDRVGVACGIFKADGVAEKDVEVLVRTFDGQSI 317
Query: 244 DFFGALRARVYDDEVRKWISGVGVGSIGKSLVNSKEAAP-TFEQPRMTMEKLLEYGNMIV 302
DFFGALRARVYDD+VR+WI G+ ++G LVN K + TFE PRM+++ LL+YG +
Sbjct: 318 DFFGALRARVYDDKVREWIRETGIEAMGPLLVNPKRGSKVTFEPPRMSLDILLQYGKALE 377
Query: 303 QEQENVKRVQLADKYLSEAAL 323
EQENVKRVQLAD YL A L
Sbjct: 378 MEQENVKRVQLADAYLDGAVL 398
>gi|410927480|gb|AFV93499.1| chloroplast ribulose bisphosphate carboxylase/oxygenase activase
beta1, partial [Gossypium barbadense]
Length = 236
Score = 465 bits (1196), Expect = e-128, Method: Compositional matrix adjust.
Identities = 223/236 (94%), Positives = 228/236 (96%)
Query: 8 AVMSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGG 67
AVMSSY+YISQGLRTY+LDN +DG YIAPAFMDKLVVHITKN+M+LPNIKVPLILGIWGG
Sbjct: 1 AVMSSYEYISQGLRTYDLDNNMDGFYIAPAFMDKLVVHITKNYMTLPNIKVPLILGIWGG 60
Query: 68 KGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLM 127
KGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCL
Sbjct: 61 KGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLF 120
Query: 128 INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGND 187
INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPT VQLPGMYNKEENPRVPIIVTGND
Sbjct: 121 INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRVPIIVTGND 180
Query: 188 FSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSI 243
FSTLYAPLIRDGRMEKFYWAPTREDRIGVC GIFR DNV DDIVKLVDTFPGQSI
Sbjct: 181 FSTLYAPLIRDGRMEKFYWAPTREDRIGVCTGIFRTDNVPVDDIVKLVDTFPGQSI 236
>gi|145346050|ref|XP_001417509.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144577736|gb|ABO95802.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 415
Score = 464 bits (1195), Expect = e-128, Method: Compositional matrix adjust.
Identities = 220/323 (68%), Positives = 263/323 (81%), Gaps = 3/323 (0%)
Query: 4 GTHYAVMSSYDYISQGLRTYNL-DN-TIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLI 61
GTH AVMSS DY+S G++TY+ DN T + YI+P++MDK++VH+ KNFM LP IKVP+I
Sbjct: 78 GTHNAVMSSQDYLSAGMKTYSAHDNITTENFYISPSYMDKVIVHVAKNFMKLPKIKVPVI 137
Query: 62 LGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKG 121
LG+WGGKGQGK+FQ +L+F K+GI+PI+MSAGELESGNAGEPAKL+RQRYREA+DI+KKG
Sbjct: 138 LGVWGGKGQGKTFQSDLIFKKLGISPIVMSAGELESGNAGEPAKLVRQRYREASDIVKKG 197
Query: 122 KMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPI 181
+M L INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPT VQLPG Y E PRVPI
Sbjct: 198 RMSTLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGQYEVIEIPRVPI 257
Query: 182 IVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQ 241
I TGNDFSTLYAPL+RDGRM+KFYW+PTREDR+G+ GIF D + +D+ LVDTF GQ
Sbjct: 258 IATGNDFSTLYAPLVRDGRMDKFYWSPTREDRVGIANGIFMADGIEKEDVEVLVDTFEGQ 317
Query: 242 SIDFFGALRARVYDDEVRKWISGVGVGSIGKSLVNSKEAAPT-FEQPRMTMEKLLEYGNM 300
SIDFFGALR+RVYDD VR +I VG ++G L+N ++ F P+MT+E LL YG
Sbjct: 318 SIDFFGALRSRVYDDLVRDFILEVGYEALGPRLINPRKGEEVNFNPPKMTLEVLLAYGKE 377
Query: 301 IVQEQENVKRVQLADKYLSEAAL 323
+ EQEN+KR+QLAD YL A L
Sbjct: 378 LENEQENIKRIQLADAYLDGAVL 400
>gi|149941206|emb|CAO02535.1| putative rubisco activase [Vigna unguiculata]
Length = 244
Score = 462 bits (1190), Expect = e-128, Method: Compositional matrix adjust.
Identities = 220/242 (90%), Positives = 230/242 (95%)
Query: 30 DGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIM 89
DG YIAPAFMDKLVVHITKNFM+LPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPI+
Sbjct: 3 DGYYIAPAFMDKLVVHITKNFMTLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIV 62
Query: 90 MSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQ 149
MSAGELESGNAGEPAKLIRQRYREAADIIKKGKMC L INDLDAGAGR+GGTTQYTVNNQ
Sbjct: 63 MSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCALFINDLDAGAGRLGGTTQYTVNNQ 122
Query: 150 MVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPT 209
MVNATLMNIADNPT VQLPGMYNKEEN RVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPT
Sbjct: 123 MVNATLMNIADNPTNVQLPGMYNKEENLRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPT 182
Query: 210 REDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISGVGVGS 269
R+DR+GVCKGIFR D V + ++ KLVDTFPGQSIDFFGALRA+VYDDEVRKW+SGVGV
Sbjct: 183 RDDRVGVCKGIFRTDGVPEKEVTKLVDTFPGQSIDFFGALRAKVYDDEVRKWVSGVGVDG 242
Query: 270 IG 271
IG
Sbjct: 243 IG 244
>gi|119855475|gb|ABM01871.1| chloroplast ribulose-1,5-bisphosphate carboxylase/oxygenase
activase [Morus alba var. multicaulis]
Length = 246
Score = 462 bits (1189), Expect = e-127, Method: Compositional matrix adjust.
Identities = 218/246 (88%), Positives = 235/246 (95%)
Query: 128 INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGND 187
INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPT VQLPGMYNKEENPRVPIIVTGND
Sbjct: 1 INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRVPIIVTGND 60
Query: 188 FSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFG 247
FSTLYAPLIRDGRMEKFYWAPTREDRIGVC GIFR+D+V ++DIVK+VDTFPGQSIDFFG
Sbjct: 61 FSTLYAPLIRDGRMEKFYWAPTREDRIGVCTGIFRSDHVPEEDIVKIVDTFPGQSIDFFG 120
Query: 248 ALRARVYDDEVRKWISGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQEN 307
ALRARVYDDEVRKWISGVGV +IGK LVNSKE PTF+QP+MT+EKLLEYGNM+VQEQEN
Sbjct: 121 ALRARVYDDEVRKWISGVGVETIGKKLVNSKEGPPTFDQPKMTVEKLLEYGNMLVQEQEN 180
Query: 308 VKRVQLADKYLSEAALGEANEDAIQSGNFYGKAAQQMNVPVPEGCTDPTAENFDPTARSD 367
VKRVQLADKYLSEAALG+AN+D+I+SG FYGKAAQQ+N+PVPEGCTDP A NFDPTARSD
Sbjct: 181 VKRVQLADKYLSEAALGDANQDSIKSGTFYGKAAQQINIPVPEGCTDPLAANFDPTARSD 240
Query: 368 DGSCQY 373
+GSC Y
Sbjct: 241 NGSCLY 246
>gi|110740175|dbj|BAF01986.1| Rubisco activase [Arabidopsis thaliana]
Length = 259
Score = 453 bits (1166), Expect = e-125, Method: Compositional matrix adjust.
Identities = 214/259 (82%), Positives = 229/259 (88%)
Query: 117 IIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEEN 176
+IKKGKMCCL INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPT VQLPGMYNKEEN
Sbjct: 1 LIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEEN 60
Query: 177 PRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVD 236
RVPII TGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFR D + D+DIV LVD
Sbjct: 61 ARVPIICTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRTDKIKDEDIVTLVD 120
Query: 237 TFPGQSIDFFGALRARVYDDEVRKWISGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLE 296
FPGQSIDFFGALRARVYDDEVRK++ +GV IGK LVNS+E P FEQP MT EKL+E
Sbjct: 121 QFPGQSIDFFGALRARVYDDEVRKFVESLGVEKIGKRLVNSREGPPVFEQPEMTYEKLME 180
Query: 297 YGNMIVQEQENVKRVQLADKYLSEAALGEANEDAIQSGNFYGKAAQQMNVPVPEGCTDPT 356
YGNM+V EQENVKRVQLA+ YLS+AALG+AN DAI G FYGK AQQ+N+PVPEGCTDP
Sbjct: 181 YGNMLVMEQENVKRVQLAETYLSQAALGDANADAIGRGTFYGKGAQQVNLPVPEGCTDPV 240
Query: 357 AENFDPTARSDDGSCQYTL 375
AENFDPTARSDDG+C Y
Sbjct: 241 AENFDPTARSDDGTCVYNF 259
>gi|116791872|gb|ABK26141.1| unknown [Picea sitchensis]
Length = 363
Score = 450 bits (1158), Expect = e-124, Method: Compositional matrix adjust.
Identities = 207/243 (85%), Positives = 229/243 (94%)
Query: 1 MGTGTHYAVMSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPL 60
MG+GTH VMS+YDYIS RTY+ DNT+DG YIAP+FMDKL+VHI+KNFM+LPNIKVPL
Sbjct: 103 MGSGTHNVVMSTYDYISTAQRTYDFDNTMDGYYIAPSFMDKLLVHISKNFMNLPNIKVPL 162
Query: 61 ILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKK 120
ILGIWGGKGQGKSFQCELVFAK+GINPIMMSAGELESG+AGEPAKL+R+RYREA+DI+KK
Sbjct: 163 ILGIWGGKGQGKSFQCELVFAKLGINPIMMSAGELESGDAGEPAKLLRKRYREASDIVKK 222
Query: 121 GKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVP 180
GKMC L INDL+AGAGRMG TTQYTVNNQMVNATLMNIADNPT VQLPGMYNK++NPRVP
Sbjct: 223 GKMCVLFINDLEAGAGRMGSTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQDNPRVP 282
Query: 181 IIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPG 240
I+VTGNDFSTLYAPLIRDGRMEKFYWAPTR+DRIGVC+GIFR DNV DD+V+LVDTFPG
Sbjct: 283 IVVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRIGVCQGIFRADNVHPDDVVRLVDTFPG 342
Query: 241 QSI 243
QSI
Sbjct: 343 QSI 345
>gi|303277399|ref|XP_003057993.1| ribulose bisphosphate carboxylase/oxygenase activase, chloroplast
precursor [Micromonas pusilla CCMP1545]
gi|226460650|gb|EEH57944.1| ribulose bisphosphate carboxylase/oxygenase activase, chloroplast
precursor [Micromonas pusilla CCMP1545]
Length = 419
Score = 447 bits (1149), Expect = e-123, Method: Compositional matrix adjust.
Identities = 221/323 (68%), Positives = 253/323 (78%), Gaps = 5/323 (1%)
Query: 4 GTHYAVMSSYDYISQGLRTYNLDNTID-GLYIAPAFMDKLVVHITKNFMSLPNIKVPLIL 62
GT A+M DY+S G + +L N D G YI+ ++MDK+ VH+ KNFM LP IKVPLIL
Sbjct: 80 GTQNAIMQGSDYVSDGFK--DLSNMSDEGYYISKSYMDKITVHVAKNFMDLPKIKVPLIL 137
Query: 63 GIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGK 122
GIWGGKGQGK+FQ L+F ++GI PI+MSAGELESGNAGEPAKLIRQRYREA+DIIKKGK
Sbjct: 138 GIWGGKGQGKTFQSTLIFKRLGIAPIIMSAGELESGNAGEPAKLIRQRYREASDIIKKGK 197
Query: 123 MCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPII 182
M L INDLDAGAGRMGG+TQYTVNNQMVNATLMN+ADNPT VQLPG Y EE PRVPII
Sbjct: 198 MSTLFINDLDAGAGRMGGSTQYTVNNQMVNATLMNLADNPTNVQLPGQYQVEEIPRVPII 257
Query: 183 VTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQS 242
TGNDFSTLYAPLIRDGRM+KFYW+PT EDR GV GIF+ D V + D+ LV TF GQS
Sbjct: 258 ATGNDFSTLYAPLIRDGRMDKFYWSPTFEDRCGVACGIFKADGVNEKDVEVLVRTFDGQS 317
Query: 243 IDFFGALRARVYDDEVRKWISGVGVGSIGKSLVNSK--EAAPTFEQPRMTMEKLLEYGNM 300
IDFFGALRARVYD +VR+W+ VG +IG LVN + FE P M++E LL++G
Sbjct: 318 IDFFGALRARVYDQKVREWVQTVGQENIGSYLVNPSRDKGKLEFEPPVMSLEVLLQHGKA 377
Query: 301 IVQEQENVKRVQLADKYLSEAAL 323
+ EQENVKRVQLAD YL A L
Sbjct: 378 LEGEQENVKRVQLADAYLDGAVL 400
>gi|149941210|emb|CAO02537.1| putative rubisco activase [Vigna unguiculata]
Length = 236
Score = 444 bits (1143), Expect = e-122, Method: Compositional matrix adjust.
Identities = 211/235 (89%), Positives = 222/235 (94%)
Query: 15 YISQGLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSF 74
Y+S GL+TYN DN DG YIAPAFMDKLVVHITKNFM+LPNIKVPLILGIWGGKGQGKSF
Sbjct: 2 YLSTGLKTYNFDNMKDGYYIAPAFMDKLVVHITKNFMTLPNIKVPLILGIWGGKGQGKSF 61
Query: 75 QCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAG 134
QCELVFAKMGINPI+MSAGELESGNAGEPAKLIRQRYREAADIIKKGKMC L INDLDAG
Sbjct: 62 QCELVFAKMGINPIVMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCALFINDLDAG 121
Query: 135 AGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAP 194
AGR+GGTTQYTVNNQMVNATLMNIADNPT VQLPGMYNKEEN RVPIIVTGNDFSTLYAP
Sbjct: 122 AGRLGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENLRVPIIVTGNDFSTLYAP 181
Query: 195 LIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGAL 249
LIRDGRMEKFYWAPTR+DR+GVCKGIFR D V ++++ KLVDTFPGQSIDFFGAL
Sbjct: 182 LIRDGRMEKFYWAPTRDDRVGVCKGIFRTDGVPEEEVYKLVDTFPGQSIDFFGAL 236
>gi|149941204|emb|CAO02534.1| putative rubisco activase [Vigna unguiculata]
Length = 229
Score = 441 bits (1135), Expect = e-121, Method: Compositional matrix adjust.
Identities = 209/227 (92%), Positives = 219/227 (96%)
Query: 30 DGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIM 89
DG YIAPAFMDKLVVHITKNFM+LPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPI+
Sbjct: 3 DGYYIAPAFMDKLVVHITKNFMTLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIV 62
Query: 90 MSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQ 149
MSAGELESGNAGEPAKLIRQRYREAADIIKKGKMC L INDLDAGAGR+GGTTQYTVNNQ
Sbjct: 63 MSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCALFINDLDAGAGRLGGTTQYTVNNQ 122
Query: 150 MVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPT 209
MVNATLMNIADNPT VQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPT
Sbjct: 123 MVNATLMNIADNPTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPT 182
Query: 210 REDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDD 256
R+DR+GVCKGIFR D V ++++ +LVDTFPGQSIDFFGALRARVYDD
Sbjct: 183 RDDRVGVCKGIFRTDGVPEEEVYQLVDTFPGQSIDFFGALRARVYDD 229
>gi|327323113|gb|AEA48974.1| rubisco activase, partial [Rosa roxburghii]
Length = 265
Score = 439 bits (1130), Expect = e-121, Method: Compositional matrix adjust.
Identities = 225/316 (71%), Positives = 242/316 (76%), Gaps = 51/316 (16%)
Query: 23 YNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAK 82
Y++DN DGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAK
Sbjct: 1 YDMDNMKDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAK 60
Query: 83 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTT 142
MGINPIMMSAGELESGNAG E A +I++ + GR
Sbjct: 61 MGINPIMMSAGELESGNAG-----------EPAKLIRQRYL------------GR----- 92
Query: 143 QYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRME 202
G YNKEENPRVPIIVTGNDFSTLYAPLIRDGRME
Sbjct: 93 -----------------------DHAGRYNKEENPRVPIIVTGNDFSTLYAPLIRDGRME 129
Query: 203 KFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWI 262
KFYWAPTR+DRIGVC GIF+ D+VA DIVKLVDTFPGQSIDFFGALRARVYDDEVRKWI
Sbjct: 130 KFYWAPTRDDRIGVCTGIFKTDSVAQSDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWI 189
Query: 263 SGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAA 322
SGVGV +GK LVNSKE PTFEQP+MT+EKLLEYGNM+VQEQENVKRVQLAD+YL+EAA
Sbjct: 190 SGVGVDGVGKKLVNSKEGPPTFEQPKMTIEKLLEYGNMLVQEQENVKRVQLADQYLNEAA 249
Query: 323 LGEANEDAIQSGNFYG 338
LG+AN DAI G F+G
Sbjct: 250 LGDANSDAIDRGTFFG 265
>gi|428227229|ref|YP_007111326.1| ribulose 1,5-bisphosphate carboxylase small subunit [Geitlerinema
sp. PCC 7407]
gi|427987130|gb|AFY68274.1| ribulose 1,5-bisphosphate carboxylase small subunit [Geitlerinema
sp. PCC 7407]
Length = 415
Score = 417 bits (1073), Expect = e-114, Method: Compositional matrix adjust.
Identities = 192/288 (66%), Positives = 237/288 (82%), Gaps = 1/288 (0%)
Query: 31 GLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMM 90
Y++P F+DK+ VHITKNF+ LP +KVPLILGI G KG+GKSFQCELVF +MGI P+ M
Sbjct: 2 SFYVSPRFLDKVAVHITKNFLDLPGVKVPLILGIHGRKGEGKSFQCELVFERMGIEPVHM 61
Query: 91 SAGELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLMINDLDAGAGRMGGTTQYTVNNQ 149
SAGELES +AG+PA+LIR RYREA + I+ +G+MC LMINDLDAGAGR G TQYTVN Q
Sbjct: 62 SAGELESPDAGDPARLIRLRYREAGEYIRTRGRMCVLMINDLDAGAGRFDGGTQYTVNTQ 121
Query: 150 MVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPT 209
+VNATLMNIADNPT VQLPG Y+++ PRVPI+VTGNDFSTLYAPLIRDGRMEKFYW P
Sbjct: 122 LVNATLMNIADNPTNVQLPGSYDEKPLPRVPILVTGNDFSTLYAPLIRDGRMEKFYWDPD 181
Query: 210 REDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISGVGVGS 269
EDR+G+ GIF +D ++ D +LVDTFP QSIDFFGALR+R YD++VR++I VGV
Sbjct: 182 YEDRVGIVSGIFSDDGLSRQDFERLVDTFPAQSIDFFGALRSRFYDEQVRRFIQEVGVEQ 241
Query: 270 IGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKY 317
+ L+NSKE APTF++PR T+E+LLE+G ++VQEQE V+ +LA++Y
Sbjct: 242 VSFRLLNSKEGAPTFQKPRFTLERLLEFGYLMVQEQERVRTSRLAEEY 289
>gi|100380|pir||S25484 ribulose-bisphosphate carboxylase activase (EC 6.3.4.-) (clone
TA1.1) - common tobacco (fragment)
gi|19992|emb|CAA78704.1| ribulose bisphosphate carboxylase activase [Nicotiana tabacum]
Length = 232
Score = 414 bits (1064), Expect = e-113, Method: Compositional matrix adjust.
Identities = 195/232 (84%), Positives = 213/232 (91%)
Query: 105 KLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTC 164
KLI QRYREAA+II+KG MCCL INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPT
Sbjct: 1 KLISQRYREAAEIIRKGNMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTN 60
Query: 165 VQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRND 224
VQLPGMYNK+EN RVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFR D
Sbjct: 61 VQLPGMYNKQENARVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRTD 120
Query: 225 NVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISGVGVGSIGKSLVNSKEAAPTF 284
NV ++ +VK+VDTFPGQSIDFFGALRARVYDDEVRKW+SG G+ +IG L+NS + PTF
Sbjct: 121 NVPEEAVVKIVDTFPGQSIDFFGALRARVYDDEVRKWVSGTGIEAIGDKLLNSFDGPPTF 180
Query: 285 EQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAALGEANEDAIQSGNF 336
EQP+MT+EKLLEYGNM+VQEQENVKRVQLA+ YL EAALG+AN DAI +GNF
Sbjct: 181 EQPKMTVEKLLEYGNMLVQEQENVKRVQLAETYLKEAALGDANADAINTGNF 232
>gi|6967045|emb|CAB72439.1| rubisco activase [Pinus halepensis]
Length = 226
Score = 394 bits (1011), Expect = e-107, Method: Compositional matrix adjust.
Identities = 185/206 (89%), Positives = 196/206 (95%)
Query: 1 MGTGTHYAVMSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPL 60
MG+GTH A+MSSYDYIS RTY+LDN +DG YIAPAFMDKLVVHI+KNFM+LPNIKVPL
Sbjct: 21 MGSGTHNAIMSSYDYISTAQRTYSLDNMMDGYYIAPAFMDKLVVHISKNFMNLPNIKVPL 80
Query: 61 ILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKK 120
ILGIWGGKGQGKSFQCELVFAK+GINPIMMSAGELESG+AGEPAKLIR+RYREAADI+KK
Sbjct: 81 ILGIWGGKGQGKSFQCELVFAKLGINPIMMSAGELESGDAGEPAKLIRKRYREAADIVKK 140
Query: 121 GKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVP 180
GKMC L INDLDAGAGRMG TTQYTVNNQMVNATLMNIADNPT VQLPGMYNKEENPRVP
Sbjct: 141 GKMCVLFINDLDAGAGRMGSTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRVP 200
Query: 181 IIVTGNDFSTLYAPLIRDGRMEKFYW 206
I+VTGNDFSTLYAPLIRDGRMEKFYW
Sbjct: 201 IVVTGNDFSTLYAPLIRDGRMEKFYW 226
>gi|411118859|ref|ZP_11391239.1| ribulose bisphosphate carboxylase small subunit [Oscillatoriales
cyanobacterium JSC-12]
gi|410710722|gb|EKQ68229.1| ribulose bisphosphate carboxylase small subunit [Oscillatoriales
cyanobacterium JSC-12]
Length = 507
Score = 392 bits (1006), Expect = e-106, Method: Compositional matrix adjust.
Identities = 189/347 (54%), Positives = 249/347 (71%), Gaps = 20/347 (5%)
Query: 25 LDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMG 84
+D YI+P F+DK+ VHITKN++ LPN+KVPLILG+ G KG+GKSFQCELVF +MG
Sbjct: 55 IDAEFMSFYISPRFLDKIAVHITKNYLDLPNVKVPLILGVHGRKGEGKSFQCELVFERMG 114
Query: 85 INPIMMSAGELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLMINDLDAGAGRMGGTTQ 143
+N + MSAGELES +AG+PA+LIR RYREAA+++K +GKM LMIND+DAGAGR+ TQ
Sbjct: 115 VNVVHMSAGELESPDAGDPARLIRLRYREAAELVKVRGKMAVLMINDIDAGAGRVDQYTQ 174
Query: 144 YTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEK 203
YTVN Q+VN TLMNIADNPT VQLPG Y+ E R+PIIVTGNDFSTLY PL+RDGRMEK
Sbjct: 175 YTVNTQLVNGTLMNIADNPTNVQLPGSYDSEPIQRIPIIVTGNDFSTLYQPLVRDGRMEK 234
Query: 204 FYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWIS 263
FYW P +DR+G+ GIF+ D V+ DI KLVDTFP Q+IDFFGALR+R++D+++R +I
Sbjct: 235 FYWEPNWDDRVGIVAGIFQVDPVSRADIEKLVDTFPNQAIDFFGALRSRLFDEQIRNFIH 294
Query: 264 GVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLA---DKYLSE 320
VG+ + + +VNSKEA P F++P ++ L+E GN +V EQ+ V+ LA +K+L
Sbjct: 295 SVGIERVSQRVVNSKEAPPEFKKPDFSLPHLIEVGNQMVYEQKRVQESGLAQEYNKFLYN 354
Query: 321 AALGEANEDAIQSGNFYGKAAQQMNVPVPEGCTDPTAENFDPTARSD 367
LG+ + + +G D ++ NF T +S+
Sbjct: 355 RRLGDTDSSTLPR----------------QGSIDSSSSNFFRTYQSE 385
>gi|149941208|emb|CAO02536.1| putative rubisco activase [Vigna unguiculata]
Length = 214
Score = 390 bits (1001), Expect = e-106, Method: Compositional matrix adjust.
Identities = 186/202 (92%), Positives = 193/202 (95%)
Query: 15 YISQGLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSF 74
Y+S GL+TYN DN DG YIAPAFMDKLVVHITKNFM+LPNIKVPLILGIWGGKGQGKSF
Sbjct: 13 YLSTGLKTYNFDNMKDGYYIAPAFMDKLVVHITKNFMTLPNIKVPLILGIWGGKGQGKSF 72
Query: 75 QCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAG 134
QCELVFAKMGINPI+MSAGELESGNAGEPAKLIRQRYREAADIIKKGKMC L INDLDAG
Sbjct: 73 QCELVFAKMGINPIVMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCALFINDLDAG 132
Query: 135 AGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAP 194
AGR+GGTTQYTVNNQMVNATLMNIADNPT VQLPGMYNKEEN RVPIIVTGNDFSTLYAP
Sbjct: 133 AGRLGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENLRVPIIVTGNDFSTLYAP 192
Query: 195 LIRDGRMEKFYWAPTREDRIGV 216
LIRDGRMEKFYWAPTR+DR+GV
Sbjct: 193 LIRDGRMEKFYWAPTRDDRVGV 214
>gi|428299641|ref|YP_007137947.1| ribulose 1,5-bisphosphate carboxylase small subunit [Calothrix sp.
PCC 6303]
gi|428236185|gb|AFZ01975.1| ribulose 1,5-bisphosphate carboxylase small subunit [Calothrix sp.
PCC 6303]
Length = 425
Score = 387 bits (995), Expect = e-105, Method: Compositional matrix adjust.
Identities = 179/288 (62%), Positives = 231/288 (80%), Gaps = 1/288 (0%)
Query: 31 GLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMM 90
G YIAP F+DKL VHITKNF+++P ++VPLILG+ G KG+GKSFQCELVF +MGI ++
Sbjct: 2 GYYIAPRFLDKLAVHITKNFLNIPGVRVPLILGVHGRKGEGKSFQCELVFERMGIEVTLI 61
Query: 91 SAGELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLMINDLDAGAGRMGGTTQYTVNNQ 149
S GELES +AG+PA+LIR RYRE A+++K +GKMC LMINDLDAGAGR TQYTVN Q
Sbjct: 62 SGGELESPDAGDPARLIRLRYRETAELVKVRGKMCVLMINDLDAGAGRFDEGTQYTVNTQ 121
Query: 150 MVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPT 209
+VNATLMNIADNPT VQLPG Y+ RVPIIVTGNDFSTLYAPLIRDGRMEKFYW P
Sbjct: 122 LVNATLMNIADNPTDVQLPGSYDSTPLRRVPIIVTGNDFSTLYAPLIRDGRMEKFYWEPD 181
Query: 210 REDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISGVGVGS 269
R+D++GV +GIF +D ++ ++ +LVDTFP QSIDF+ A+R+R+YD++V +I +GV +
Sbjct: 182 RDDKVGVVEGIFGDDGLSRREVAQLVDTFPNQSIDFYSAMRSRLYDEQVLHFIHDIGVEN 241
Query: 270 IGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKY 317
+ + +VNS EAAP F +P ++ +LLE GN +V EQ++V+ QL ++Y
Sbjct: 242 VSQRVVNSAEAAPIFGKPDFSLSRLLEMGNFMVSEQQHVENSQLVEQY 289
>gi|334117637|ref|ZP_08491728.1| ribulose bisphosphate carboxylase small chain [Microcoleus
vaginatus FGP-2]
gi|333460746|gb|EGK89354.1| ribulose bisphosphate carboxylase small chain [Microcoleus
vaginatus FGP-2]
Length = 425
Score = 386 bits (992), Expect = e-105, Method: Compositional matrix adjust.
Identities = 176/286 (61%), Positives = 230/286 (80%), Gaps = 1/286 (0%)
Query: 33 YIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSA 92
YI+P F+DK+ VHITKNF++LP ++VPLILGI G KG+GK+FQ ELVF +MG P+M+S
Sbjct: 4 YISPNFLDKVAVHITKNFLNLPGVRVPLILGIHGRKGEGKTFQTELVFRRMGFEPVMISG 63
Query: 93 GELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLMINDLDAGAGRMGGTTQYTVNNQMV 151
GELES +AG+PA+LIR RYREAA+ I+ +G+MC + INDLDAGAGR TTQYTVN QMV
Sbjct: 64 GELESPDAGDPARLIRLRYREAAEQIRVRGEMCAIFINDLDAGAGRFDSTTQYTVNTQMV 123
Query: 152 NATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRE 211
NATLMNIADNPT VQLPG Y+ RVPIIVTGNDFSTLYAPLIRDGRMEKFYW P+R+
Sbjct: 124 NATLMNIADNPTNVQLPGSYDSTPLDRVPIIVTGNDFSTLYAPLIRDGRMEKFYWEPSRD 183
Query: 212 DRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISGVGVGSIG 271
D+IG+ GIF +D ++ +IV LVD FP Q+IDFF ALR+R+YD+++R++I +G+ +
Sbjct: 184 DKIGIVGGIFESDKLSKTEIVGLVDNFPDQAIDFFSALRSRIYDEQIREFIHKIGIERVS 243
Query: 272 KSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKY 317
K LVN+ EAAP F+ P ++ LLE G+++V +Q+ ++ ++L D+Y
Sbjct: 244 KRLVNTLEAAPDFQNPNFSLAHLLEMGSLMVGQQKRIQEMRLVDEY 289
>gi|428320865|ref|YP_007118747.1| ribulose 1,5-bisphosphate carboxylase small subunit [Oscillatoria
nigro-viridis PCC 7112]
gi|428244545|gb|AFZ10331.1| ribulose 1,5-bisphosphate carboxylase small subunit [Oscillatoria
nigro-viridis PCC 7112]
Length = 424
Score = 385 bits (990), Expect = e-104, Method: Compositional matrix adjust.
Identities = 177/286 (61%), Positives = 230/286 (80%), Gaps = 1/286 (0%)
Query: 33 YIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSA 92
YI+P F+DK+ VH+TKNF++LP ++VPLILGI G KG+GK+FQ ELVF +MG P+M+S
Sbjct: 4 YISPNFLDKVAVHVTKNFLNLPGVRVPLILGIHGRKGEGKTFQTELVFRRMGFEPVMISG 63
Query: 93 GELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLMINDLDAGAGRMGGTTQYTVNNQMV 151
GELES +AG+PA+LIR RYREAA+ I+ +G+MC + INDLDAGAGR TTQYTVN QMV
Sbjct: 64 GELESPDAGDPARLIRLRYREAAEQIRVRGEMCAIFINDLDAGAGRFDTTTQYTVNTQMV 123
Query: 152 NATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRE 211
NATLMNIADNPT VQLPG Y+ RVPIIVTGNDFSTLYAPLIRDGRMEKFYW P+R+
Sbjct: 124 NATLMNIADNPTNVQLPGSYDSTPLHRVPIIVTGNDFSTLYAPLIRDGRMEKFYWEPSRD 183
Query: 212 DRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISGVGVGSIG 271
D+IG+ GIF +D ++ +IV LVD FP Q+IDFF ALR+R+YD++VR++I VG+ +
Sbjct: 184 DKIGIVGGIFESDKLSKTEIVGLVDHFPDQAIDFFSALRSRIYDEQVREFIHKVGIERVS 243
Query: 272 KSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKY 317
K LVN+ EAAP F+ P ++ LLE G+++V +Q+ ++ ++L D+Y
Sbjct: 244 KRLVNTLEAAPDFKNPDFSLAHLLEMGSLMVGQQKRIQEMRLVDEY 289
>gi|428305071|ref|YP_007141896.1| ribulose 1,5-bisphosphate carboxylase small subunit [Crinalium
epipsammum PCC 9333]
gi|428246606|gb|AFZ12386.1| ribulose 1,5-bisphosphate carboxylase small subunit [Crinalium
epipsammum PCC 9333]
Length = 427
Score = 385 bits (990), Expect = e-104, Method: Compositional matrix adjust.
Identities = 171/286 (59%), Positives = 231/286 (80%), Gaps = 1/286 (0%)
Query: 33 YIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSA 92
YI+P F+DKL VHITKNF+ LP ++VPLILGI G KG+GK+FQCELVF +MGI + MSA
Sbjct: 4 YISPRFLDKLAVHITKNFLDLPGVRVPLILGIHGRKGEGKTFQCELVFQRMGIEVVHMSA 63
Query: 93 GELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLMINDLDAGAGRMGGTTQYTVNNQMV 151
GELES +AG+P++L+R RYREAA++IK +GKMC LMINDLDAGAGR TQYTVN QMV
Sbjct: 64 GELESPDAGDPSRLVRLRYREAAELIKVRGKMCVLMINDLDAGAGRFDQGTQYTVNTQMV 123
Query: 152 NATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRE 211
NATLMNIADNPT VQLPG Y+ RVPI+VTGNDF+TLYAPLIRDGRMEKF+W PTR+
Sbjct: 124 NATLMNIADNPTNVQLPGSYDSTPLHRVPILVTGNDFTTLYAPLIRDGRMEKFHWEPTRD 183
Query: 212 DRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISGVGVGSIG 271
+++G+ +GI+ D +++ +I +LVD F Q++DFFGALR+R+YD+++R++I VG +
Sbjct: 184 EKVGIVRGIYSEDGLSESEIAQLVDNFVTQAVDFFGALRSRIYDEQIRQFIHQVGYNKVS 243
Query: 272 KSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKY 317
++VNS + P F++P ++ +L+E+GN++ QEQ+ V+ +L ++Y
Sbjct: 244 SAVVNSVDGPPIFQKPDFSLSRLIEFGNLMAQEQQRVQSSRLVEEY 289
>gi|186684323|ref|YP_001867519.1| ribulose bisphosphate carboxylase, small chain [Nostoc punctiforme
PCC 73102]
gi|186466775|gb|ACC82576.1| ribulose bisphosphate carboxylase, small chain [Nostoc punctiforme
PCC 73102]
Length = 425
Score = 383 bits (983), Expect = e-104, Method: Compositional matrix adjust.
Identities = 191/346 (55%), Positives = 239/346 (69%), Gaps = 9/346 (2%)
Query: 31 GLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMM 90
G YIAP F+DKL VHITKNF+ LP ++VP+ILGI G KG+GK+FQC+LVF KMGI +
Sbjct: 2 GYYIAPRFLDKLAVHITKNFLKLPGVRVPVILGIHGRKGEGKTFQCQLVFEKMGIEVTHV 61
Query: 91 SAGELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLMINDLDAGAGRMGGTTQYTVNNQ 149
S GELES +AG+PA+LIR RYRE A++IK +GKMC LMINDLDAGAGR TQYTVN Q
Sbjct: 62 SGGELESPDAGDPARLIRLRYRETAELIKVRGKMCVLMINDLDAGAGRFDEGTQYTVNTQ 121
Query: 150 MVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPT 209
+VNATLMNIADNPT VQLPG Y+ RVPIIVTGNDFSTLYAPLIRDGRMEKFYW P
Sbjct: 122 LVNATLMNIADNPTDVQLPGSYDSTPLHRVPIIVTGNDFSTLYAPLIRDGRMEKFYWEPD 181
Query: 210 REDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISGVGVGS 269
R+D++G+ KGIF D ++ ++ +LVDTF QSIDFF ALR+R+YD+++R +I VG
Sbjct: 182 RDDKVGIVKGIFEPDGLSQKEVEQLVDTFVNQSIDFFSALRSRIYDEQIRNYIHQVGFER 241
Query: 270 IGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAALGEANED 329
+ S+VNS E P F++P + L+E GN +V EQ+ V+ L D Y + G ++
Sbjct: 242 VSLSVVNSTEGPPEFKKPDFRLSHLIESGNFLVGEQKRVENSHLVDDY-NRLNRGRNSQS 300
Query: 330 AIQSGNFYGKAAQQMNVPVPEGCTDPTAENFDPTARSDDGSCQYTL 375
A AA +N P G T N + + + S TL
Sbjct: 301 A-------SPAATPINQPSSNGATQEAKTNGNGFQKQEGLSSHLTL 339
>gi|427728382|ref|YP_007074619.1| ribulose bisphosphate carboxylase small subunit [Nostoc sp. PCC
7524]
gi|427364301|gb|AFY47022.1| ribulose bisphosphate carboxylase small subunit [Nostoc sp. PCC
7524]
Length = 415
Score = 383 bits (983), Expect = e-104, Method: Compositional matrix adjust.
Identities = 178/286 (62%), Positives = 222/286 (77%), Gaps = 1/286 (0%)
Query: 33 YIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSA 92
YIAP F+DKL VHITKNF++LP ++VPLILGI G KG+GK+FQCEL F KMG+ ++S
Sbjct: 4 YIAPRFLDKLAVHITKNFLNLPGVRVPLILGIHGRKGEGKTFQCELAFEKMGVEVTLISG 63
Query: 93 GELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLMINDLDAGAGRMGGTTQYTVNNQMV 151
GELES +AG+PA+LIR RYRE A++IK +GKMC LMINDLDAGAGR TQYTVN Q+V
Sbjct: 64 GELESPDAGDPARLIRLRYRETAELIKVRGKMCVLMINDLDAGAGRFDEGTQYTVNTQLV 123
Query: 152 NATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRE 211
NATLMNIADNPT VQLPG Y+ RVPIIVTGNDFSTLYAPLIRDGRMEKFYW P R+
Sbjct: 124 NATLMNIADNPTDVQLPGSYDSTPLRRVPIIVTGNDFSTLYAPLIRDGRMEKFYWEPNRD 183
Query: 212 DRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISGVGVGSIG 271
D++G+ GIF D ++ ++ +LVDTFP QSIDFF ALR+R+YD+++R +I VG +
Sbjct: 184 DKVGIVGGIFGEDGLSQREVEQLVDTFPNQSIDFFSALRSRIYDEQIRNFIHQVGFEHVS 243
Query: 272 KSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKY 317
+VNS E P F++P ++ L+E GN +V EQ+ V+ QL D+Y
Sbjct: 244 LRVVNSLEGPPAFKKPEFSLSHLIESGNFMVGEQKRVETSQLVDEY 289
>gi|443313470|ref|ZP_21043081.1| ribulose bisphosphate carboxylase small subunit [Synechocystis sp.
PCC 7509]
gi|442776413|gb|ELR86695.1| ribulose bisphosphate carboxylase small subunit [Synechocystis sp.
PCC 7509]
Length = 498
Score = 383 bits (983), Expect = e-104, Method: Compositional matrix adjust.
Identities = 178/286 (62%), Positives = 221/286 (77%), Gaps = 1/286 (0%)
Query: 33 YIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSA 92
YI+P+F+DKL VHITKNF+ LP ++VPLILGI G KG+GKSFQCELVF +MGI I MSA
Sbjct: 4 YISPSFLDKLAVHITKNFLELPGVRVPLILGIHGRKGEGKSFQCELVFERMGIEAIHMSA 63
Query: 93 GELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLMINDLDAGAGRMGGTTQYTVNNQMV 151
GELES +AG+P +L+R RYREA+++ K +GKMC LMINDLDAGAGR TQYTVN Q+V
Sbjct: 64 GELESPDAGDPGRLVRLRYREASELSKVRGKMCVLMINDLDAGAGRFDRGTQYTVNTQLV 123
Query: 152 NATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRE 211
N TLMNIADNPT VQLPG Y+ R+PIIVTGNDFSTLYAPLIRDGRMEKF+W P R+
Sbjct: 124 NGTLMNIADNPTDVQLPGSYDSTPLQRIPIIVTGNDFSTLYAPLIRDGRMEKFFWEPNRD 183
Query: 212 DRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISGVGVGSIG 271
D++G+ GIF D + DI KLVDTF Q IDFF ALR+R+YD+++R +I G +
Sbjct: 184 DKVGIVSGIFEPDGLPKRDIEKLVDTFLNQPIDFFSALRSRIYDEQIRDFIHTTGFEKVS 243
Query: 272 KSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKY 317
+VNS EAAPTF +P + +L+EYGN++V+EQ+ V+ L +Y
Sbjct: 244 LRVVNSTEAAPTFAKPNFQLPRLIEYGNLMVKEQQRVENSGLVREY 289
>gi|300868066|ref|ZP_07112703.1| Ribulose bisphosphate carboxylase/oxygenase activase [Oscillatoria
sp. PCC 6506]
gi|300333904|emb|CBN57881.1| Ribulose bisphosphate carboxylase/oxygenase activase [Oscillatoria
sp. PCC 6506]
Length = 425
Score = 382 bits (982), Expect = e-103, Method: Compositional matrix adjust.
Identities = 174/302 (57%), Positives = 228/302 (75%), Gaps = 1/302 (0%)
Query: 33 YIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSA 92
YI+P+F+DK+ VHITKNF+ LP ++VPLILGI G KG+GK+FQCEL F ++G P+ +S
Sbjct: 4 YISPSFLDKVAVHITKNFLDLPGVRVPLILGIHGRKGEGKTFQCELAFERLGFEPVTISG 63
Query: 93 GELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLMINDLDAGAGRMGGTTQYTVNNQMV 151
GELES +AG+PA+LIR RYREAA+ I+ +G+MC + INDLDAGAGR TTQYTVN Q+V
Sbjct: 64 GELESPDAGDPARLIRLRYREAAEQIRVRGEMCAIFINDLDAGAGRFDSTTQYTVNTQLV 123
Query: 152 NATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRE 211
NATLMNIADNPT VQLPG Y+ RVPIIVTGNDF+TLYAPLIRDGRMEKFYW P R+
Sbjct: 124 NATLMNIADNPTNVQLPGSYDDTPLHRVPIIVTGNDFATLYAPLIRDGRMEKFYWEPNRD 183
Query: 212 DRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISGVGVGSIG 271
D+IG+ GIF D + +I + VD FP Q+IDFF ALR+R+YD+++R++I G+G+ +
Sbjct: 184 DKIGIVSGIFEADGMPQSEIAEFVDAFPDQAIDFFSALRSRIYDEQIREFIHGIGIEKVS 243
Query: 272 KSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAALGEANEDAI 331
K LVNS EAAP F +P ++ +L+E G +V +Q +K ++L ++Y G N +
Sbjct: 244 KRLVNSLEAAPHFPKPNFSLSRLIEIGRAMVGQQYRIKEMRLVEEYNQNRLFGSQNSGEV 303
Query: 332 QS 333
S
Sbjct: 304 SS 305
>gi|75910107|ref|YP_324403.1| ribulose 1,5-bisphosphate carboxylase small subunit [Anabaena
variabilis ATCC 29413]
gi|75703832|gb|ABA23508.1| ribulose 1,5-bisphosphate carboxylase small subunit [Anabaena
variabilis ATCC 29413]
Length = 414
Score = 382 bits (981), Expect = e-103, Method: Compositional matrix adjust.
Identities = 180/286 (62%), Positives = 223/286 (77%), Gaps = 1/286 (0%)
Query: 33 YIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSA 92
YIAP F+DKL VHITKNF+++P ++VPLILGI G KG+GK+FQCEL F KMGI ++S
Sbjct: 4 YIAPRFLDKLAVHITKNFLNIPGVRVPLILGIHGRKGEGKTFQCELAFEKMGIEVTLISG 63
Query: 93 GELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLMINDLDAGAGRMGGTTQYTVNNQMV 151
GELES +AG+PA+LIR RYRE A++IK +GKMC LMINDLDAGAGR TQYTVN Q+V
Sbjct: 64 GELESPDAGDPARLIRLRYRETAELIKVRGKMCVLMINDLDAGAGRFDEGTQYTVNTQLV 123
Query: 152 NATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRE 211
NATLMNIADNPT VQLPG Y+ RVPIIVTGNDFSTLYAPLIRDGRMEKFYW P R+
Sbjct: 124 NATLMNIADNPTDVQLPGSYDSNPIRRVPIIVTGNDFSTLYAPLIRDGRMEKFYWEPNRD 183
Query: 212 DRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISGVGVGSIG 271
D++G+ GIF D ++ +I +LVDTFP QSIDFF ALR+R+YD+++R +I VG I
Sbjct: 184 DKVGIVGGIFAEDGLSKREIEQLVDTFPKQSIDFFSALRSRIYDEQIRDFIHQVGFERIS 243
Query: 272 KSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKY 317
+VNS EA P F++P ++ L+E GN+++ EQ+ V QL D+Y
Sbjct: 244 LRVVNSVEAPPEFKKPDFSLAHLIESGNLVLGEQQRVDNSQLVDEY 289
>gi|149941212|emb|CAO02538.1| putative rubisco activase [Vigna unguiculata]
Length = 194
Score = 382 bits (980), Expect = e-103, Method: Compositional matrix adjust.
Identities = 182/192 (94%), Positives = 187/192 (97%)
Query: 30 DGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIM 89
DG YIAPAFMDKLVVHITKNFM+LPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPI+
Sbjct: 3 DGYYIAPAFMDKLVVHITKNFMTLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIV 62
Query: 90 MSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQ 149
MSAGELESGNAGEPAKLIRQRYREAADIIKKGKMC L INDLDAGAGR+GGTTQYTVNNQ
Sbjct: 63 MSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCALFINDLDAGAGRLGGTTQYTVNNQ 122
Query: 150 MVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPT 209
MVNATLMNIADNPT VQLPGMYNKEEN RVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPT
Sbjct: 123 MVNATLMNIADNPTNVQLPGMYNKEENLRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPT 182
Query: 210 REDRIGVCKGIF 221
R+DR+GVCKGIF
Sbjct: 183 RDDRVGVCKGIF 194
>gi|220909662|ref|YP_002484973.1| ribulose bisphosphate carboxylase small chain [Cyanothece sp. PCC
7425]
gi|219866273|gb|ACL46612.1| ribulose bisphosphate carboxylase small chain [Cyanothece sp. PCC
7425]
Length = 423
Score = 382 bits (980), Expect = e-103, Method: Compositional matrix adjust.
Identities = 176/288 (61%), Positives = 227/288 (78%), Gaps = 1/288 (0%)
Query: 31 GLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMM 90
G YIAP F+DKL VHITKN++ LPN+KVPLILGI G KG+GK+F CELVF +MGI + M
Sbjct: 2 GYYIAPRFLDKLSVHITKNYLDLPNVKVPLILGIHGRKGEGKTFMCELVFKRMGIGVVYM 61
Query: 91 SAGELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLMINDLDAGAGRMGGTTQYTVNNQ 149
SAGELES +AG+P++LIR RYREA + K G+M LMIND+DAG GR+ TTQYTVN Q
Sbjct: 62 SAGELESPDAGDPSRLIRLRYREAGEWSKVNGRMAALMINDVDAGIGRVDETTQYTVNTQ 121
Query: 150 MVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPT 209
+VNATLMNIADNPT VQLPG Y++E R+PII+TGNDFST+YAPLIRDGRMEKFYW P
Sbjct: 122 LVNATLMNIADNPTNVQLPGSYDQEPTRRIPIILTGNDFSTMYAPLIRDGRMEKFYWEPD 181
Query: 210 REDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISGVGVGS 269
R DR+G+ +GIF D + D +I KLVD+FP QSIDFFGALR+R+YD+++R+ I VG+
Sbjct: 182 RSDRLGIVQGIFALDQIPDPEIEKLVDSFPDQSIDFFGALRSRLYDEQIRQLIQEVGIER 241
Query: 270 IGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKY 317
I +VNS E P F +P ++ L+E G ++V+EQ+ ++ ++L+++Y
Sbjct: 242 ISPRVVNSAEPLPEFRRPNFSLPHLIEIGQLMVREQQRIRELRLSEEY 289
>gi|434391832|ref|YP_007126779.1| ribulose 1,5-bisphosphate carboxylase small subunit [Gloeocapsa sp.
PCC 7428]
gi|428263673|gb|AFZ29619.1| ribulose 1,5-bisphosphate carboxylase small subunit [Gloeocapsa sp.
PCC 7428]
Length = 462
Score = 381 bits (979), Expect = e-103, Method: Compositional matrix adjust.
Identities = 183/302 (60%), Positives = 228/302 (75%), Gaps = 3/302 (0%)
Query: 33 YIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSA 92
YI+P F+DKL VHITKNF+ LP I+VPLILGI G KG+GK+FQCELVF +MGI I +S
Sbjct: 4 YISPRFLDKLAVHITKNFLDLPGIRVPLILGIHGRKGEGKTFQCELVFERMGIEVIHISG 63
Query: 93 GELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLMINDLDAGAGRMGGTTQYTVNNQMV 151
GELES +AG+PA+LIR RYREAA++IK +GKM LMINDLDAGAGR TQYTVN Q+V
Sbjct: 64 GELESPDAGDPARLIRLRYREAAELIKVRGKMVALMINDLDAGAGRFDEGTQYTVNTQLV 123
Query: 152 NATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRE 211
NATLMNIADNPT VQLPG Y+ RVPIIVTGNDFSTLYAPLIR+GRMEKFYW P R+
Sbjct: 124 NATLMNIADNPTDVQLPGSYDSTPLHRVPIIVTGNDFSTLYAPLIREGRMEKFYWEPDRD 183
Query: 212 DRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISGVGVGSIG 271
D+IG+ GIF D ++ ++ +LVD FP Q+IDFF ALR+RVYD+++R++I G+ +
Sbjct: 184 DKIGIVGGIFAEDGLSAQEVTQLVDAFPDQAIDFFSALRSRVYDEQIRRFIHETGIERVS 243
Query: 272 KSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAALGEANEDAI 331
+VNS E P F++P + LLE GN +VQEQ+ V+ +L +Y AL AN + I
Sbjct: 244 LRVVNSTEGPPVFQKPDFRLSHLLESGNFMVQEQQRVESSRLVHEY--NQALYYANRNPI 301
Query: 332 QS 333
+
Sbjct: 302 SA 303
>gi|10720250|sp|Q06721.1|RCA_ANASC RecName: Full=Ribulose bisphosphate carboxylase/oxygenase activase;
Short=RA; Short=RuBisCO activase
gi|485516|pir||S33627 ribulose-bisphosphate carboxylase activase (EC 6.3.4.-) - Anabaena
sp. (strain CA)
gi|296414|emb|CAA48129.1| ribulose 1,5-bisphosphate carboxylase/oxygenase activase [Anabaena
sp. CA]
Length = 415
Score = 381 bits (978), Expect = e-103, Method: Compositional matrix adjust.
Identities = 177/286 (61%), Positives = 222/286 (77%), Gaps = 1/286 (0%)
Query: 33 YIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSA 92
YIAP F+DKL VHITKNF++LP ++VPLILGI G KG+GK+FQCEL F KMG+ ++S
Sbjct: 4 YIAPRFLDKLAVHITKNFLNLPGVRVPLILGIHGRKGEGKTFQCELAFEKMGVEVTLISG 63
Query: 93 GELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLMINDLDAGAGRMGGTTQYTVNNQMV 151
GELES +AG+PA+LIR RYRE A++IK +GKMC LMINDLDAGAGR TQYTVN Q+V
Sbjct: 64 GELESPDAGDPARLIRLRYRETAELIKVRGKMCVLMINDLDAGAGRFDEGTQYTVNTQLV 123
Query: 152 NATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRE 211
NATLMNIADNPT VQLPG Y+ RVPIIVTGNDFSTLYAPLIRDGRMEKFYW P R+
Sbjct: 124 NATLMNIADNPTDVQLPGSYDSTPLRRVPIIVTGNDFSTLYAPLIRDGRMEKFYWEPHRD 183
Query: 212 DRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISGVGVGSIG 271
+++G+ GIF D ++ D+ KLVD+FP QSIDFF ALR+R+YD+++R +I VG ++
Sbjct: 184 EKVGIVGGIFAEDGLSQRDVEKLVDSFPNQSIDFFSALRSRIYDEQIRDFIHQVGYENVS 243
Query: 272 KSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKY 317
+VNS E P F++P T+ L+E N +V EQ+ ++ QL D+Y
Sbjct: 244 LRVVNSLEGPPAFKKPDFTLSHLIESANFMVAEQKRIETSQLVDEY 289
>gi|113475266|ref|YP_721327.1| ribulose 1,5-bisphosphate carboxylase small subunit [Trichodesmium
erythraeum IMS101]
gi|110166314|gb|ABG50854.1| ribulose 1,5-bisphosphate carboxylase small subunit [Trichodesmium
erythraeum IMS101]
Length = 423
Score = 380 bits (977), Expect = e-103, Method: Compositional matrix adjust.
Identities = 175/293 (59%), Positives = 224/293 (76%), Gaps = 1/293 (0%)
Query: 33 YIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSA 92
YI+P F+DKL VHITKNF+ +P I+VPLI+GI G KG+GK+FQC+LVF KMGI P+ +S
Sbjct: 4 YISPRFIDKLAVHITKNFLEIPRIRVPLIIGIHGRKGEGKTFQCQLVFEKMGIEPVTISG 63
Query: 93 GELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLMINDLDAGAGRMGGTTQYTVNNQMV 151
GELES +AG+PA+L+R RYREA++ +K +G+MC L INDLDAGAGR G TQYTVN Q+V
Sbjct: 64 GELESKDAGDPARLLRLRYREASEKVKVQGRMCALFINDLDAGAGRFDGGTQYTVNTQLV 123
Query: 152 NATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRE 211
NATLMNIADNPT VQLPG Y++ R+PIIVTGNDFSTLYAPLIRDGRMEKFYW P RE
Sbjct: 124 NATLMNIADNPTNVQLPGSYDETPLHRIPIIVTGNDFSTLYAPLIRDGRMEKFYWEPNRE 183
Query: 212 DRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISGVGVGSIG 271
DR+G+ IF+ D ++ DI L+D F Q+IDFF ALR+R+YD+++R +I VG+ I
Sbjct: 184 DRVGIVGSIFKTDELSTGDIDNLIDEFSDQAIDFFSALRSRIYDEQIRDFIHQVGIEKIS 243
Query: 272 KSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAALG 324
+ +VNS E P F QP + +LLEYG ++V EQE ++ + L ++Y G
Sbjct: 244 RRVVNSVEKIPDFPQPTFNVSRLLEYGKIMVGEQERIRELGLVEEYNKSRLFG 296
>gi|17229025|ref|NP_485573.1| ribulose 1,5-bisphosphate carboxylase/oxygenase activase [Nostoc
sp. PCC 7120]
gi|20139326|sp|P58555.1|RCA_ANASP RecName: Full=Ribulose bisphosphate carboxylase/oxygenase activase;
Short=RA; Short=RuBisCO activase
gi|17135353|dbj|BAB77899.1| ribulose 1,5-bisphosphate carboxylase/oxygenase activase [Nostoc
sp. PCC 7120]
Length = 414
Score = 380 bits (977), Expect = e-103, Method: Compositional matrix adjust.
Identities = 180/286 (62%), Positives = 222/286 (77%), Gaps = 1/286 (0%)
Query: 33 YIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSA 92
YIAP F+DKL VHITKNF+++P ++VPLILGI G KG+GK+FQCEL F KMGI ++S
Sbjct: 4 YIAPRFLDKLAVHITKNFLNIPGVRVPLILGIHGRKGEGKTFQCELAFEKMGIEVTLISG 63
Query: 93 GELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLMINDLDAGAGRMGGTTQYTVNNQMV 151
GELES +AG+PA+LIR RYRE A++IK +GKMC LMINDLDAGAGR TQYTVN Q+V
Sbjct: 64 GELESPDAGDPARLIRLRYRETAELIKVRGKMCVLMINDLDAGAGRFDEGTQYTVNTQLV 123
Query: 152 NATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRE 211
NATLMNIADNPT VQLPG Y+ RVPIIVTGNDFSTLYAPLIRDGRMEKFYW P R+
Sbjct: 124 NATLMNIADNPTDVQLPGSYDSNPIRRVPIIVTGNDFSTLYAPLIRDGRMEKFYWEPNRD 183
Query: 212 DRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISGVGVGSIG 271
D++G+ GIF D ++ +I +LVDTFP QSIDFF ALR+R+YD ++R +I VG I
Sbjct: 184 DKVGIVGGIFAEDGLSQREIEQLVDTFPKQSIDFFSALRSRIYDIQIRDFIHKVGFERIS 243
Query: 272 KSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKY 317
+VNS EA P F++P ++ L+E GN+++ EQ+ V QL D+Y
Sbjct: 244 LRVVNSLEAPPEFKKPDFSLAHLIESGNLVLGEQQRVDNSQLVDEY 289
>gi|427715651|ref|YP_007063645.1| ribulose 1,5-bisphosphate carboxylase small subunit [Calothrix sp.
PCC 7507]
gi|427348087|gb|AFY30811.1| ribulose 1,5-bisphosphate carboxylase small subunit [Calothrix sp.
PCC 7507]
Length = 417
Score = 380 bits (977), Expect = e-103, Method: Compositional matrix adjust.
Identities = 178/286 (62%), Positives = 223/286 (77%), Gaps = 1/286 (0%)
Query: 33 YIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSA 92
YIAP F+DKL VHITKNF+ LP ++VPLILGI G KG+GK+FQCELVF KMGI ++S
Sbjct: 4 YIAPRFLDKLAVHITKNFLKLPGVRVPLILGIHGRKGEGKTFQCELVFEKMGIEVTLISG 63
Query: 93 GELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLMINDLDAGAGRMGGTTQYTVNNQMV 151
GELES +AG+PA+LIR RYRE A++IK +GKMC LMINDLDAGAGR TQYTVN Q+V
Sbjct: 64 GELESPDAGDPARLIRLRYRETAELIKVRGKMCVLMINDLDAGAGRFDEGTQYTVNTQLV 123
Query: 152 NATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRE 211
NATLMNIADNPT VQLPG Y+ RVPIIVTGNDF+TLYAPLIRDGRMEKFYW P R+
Sbjct: 124 NATLMNIADNPTDVQLPGSYDSTPLHRVPIIVTGNDFTTLYAPLIRDGRMEKFYWEPDRD 183
Query: 212 DRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISGVGVGSIG 271
D++G+ GIF D ++ ++ +LVDTFP QSIDF+ A+R+R+YD+++R +I VG +
Sbjct: 184 DKVGIVGGIFEPDGLSRKEVEQLVDTFPHQSIDFYSAVRSRIYDEQIRNYIHKVGFEQVS 243
Query: 272 KSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKY 317
S+VNS E P F++P + L+E GN++V EQ+ V+ QL D+Y
Sbjct: 244 LSVVNSVEGPPEFKKPNFGLSHLIEAGNLMVGEQKRVENSQLVDEY 289
>gi|332710946|ref|ZP_08430882.1| ribulose 1,5-bisphosphate carboxylase small subunit [Moorea
producens 3L]
gi|332350260|gb|EGJ29864.1| ribulose 1,5-bisphosphate carboxylase small subunit [Moorea
producens 3L]
Length = 448
Score = 380 bits (976), Expect = e-103, Method: Compositional matrix adjust.
Identities = 174/286 (60%), Positives = 223/286 (77%), Gaps = 1/286 (0%)
Query: 33 YIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSA 92
YI+P F+DKL VHITKNF+ +P+++VPLILGI G KG+GKSFQCELVF +MGI + MS+
Sbjct: 6 YISPRFIDKLAVHITKNFLDIPHVRVPLILGIHGRKGEGKSFQCELVFERMGIEAVHMSS 65
Query: 93 GELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLMINDLDAGAGRMGGTTQYTVNNQMV 151
GELES +AG+PA+LIR RYRE A++I+ KGKMC LMINDLDAGAGR TQYTVN Q+V
Sbjct: 66 GELESPDAGDPARLIRLRYRETAEMIRVKGKMCVLMINDLDAGAGRFDERTQYTVNTQLV 125
Query: 152 NATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRE 211
+ TLMNIADNPT VQLPG Y+ + RVPIIVTGNDFSTLYAPL RDGRM KFYW P RE
Sbjct: 126 HGTLMNIADNPTNVQLPGSYDSQPIHRVPIIVTGNDFSTLYAPLTRDGRMSKFYWEPNRE 185
Query: 212 DRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISGVGVGSIG 271
DRIG+ GIF D ++ +I +L+DTF Q+IDFF ALR+R+YD+++RK+I +G+ +
Sbjct: 186 DRIGIVSGIFHGDGLSSGEIEQLIDTFDNQAIDFFSALRSRIYDEQIRKFIYDIGIDRVS 245
Query: 272 KSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKY 317
+VNSK+ P FE P ++ +L+E+G +I EQ+ ++ LA +Y
Sbjct: 246 SRVVNSKQGPPKFETPNFSISRLIEFGELIKAEQQRLELSGLAREY 291
>gi|434404079|ref|YP_007146964.1| ribulose bisphosphate carboxylase small subunit [Cylindrospermum
stagnale PCC 7417]
gi|428258334|gb|AFZ24284.1| ribulose bisphosphate carboxylase small subunit [Cylindrospermum
stagnale PCC 7417]
Length = 415
Score = 380 bits (975), Expect = e-103, Method: Compositional matrix adjust.
Identities = 187/332 (56%), Positives = 234/332 (70%), Gaps = 16/332 (4%)
Query: 33 YIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSA 92
YIAP F+DKL VHITKNF+ LP ++VPLILGI G KG+GK+FQCELVF KMGI +S
Sbjct: 4 YIAPRFLDKLGVHITKNFLQLPGVRVPLILGIHGRKGEGKTFQCELVFEKMGIEVTQISG 63
Query: 93 GELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLMINDLDAGAGRMGGTTQYTVNNQMV 151
GELES +AG+PA+LIR RYRE A++IK +GKMC LMINDLDAGAGR TQYTVN Q+V
Sbjct: 64 GELESPDAGDPARLIRLRYRETAELIKVRGKMCVLMINDLDAGAGRFDEGTQYTVNTQLV 123
Query: 152 NATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRE 211
NATLMNIADNPT VQLPG Y+ RVPIIVTGNDFSTLYAPLIRDGRMEKFYW P+R+
Sbjct: 124 NATLMNIADNPTDVQLPGSYDSTPLHRVPIIVTGNDFSTLYAPLIRDGRMEKFYWEPSRD 183
Query: 212 DRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISGVGVGSIG 271
D++G+ GIF D ++ + +LVDTF QS+DFF ALR+R+YD+++R++I VG +
Sbjct: 184 DKVGIVGGIFAEDGLSQRQVEQLVDTFINQSVDFFSALRSRIYDEQIREFIHQVGFERVS 243
Query: 272 KSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAALGEANEDAI 331
+VNS E P F++P ++ L+E GN+IV EQ+ V+ L D Y + +
Sbjct: 244 LRVVNSAEKPPEFKKPDFSLSHLIEAGNLIVGEQQRVETSHLVDDY-----------NRL 292
Query: 332 QSGNFYGKAAQQMNVPVPEGCTD----PTAEN 359
G Y A+ PV + T+ P A N
Sbjct: 293 NRGRSYQAASPAAETPVSQPSTNGFPKPEASN 324
>gi|414076620|ref|YP_006995938.1| ribulose bisphosphate carboxylase activase [Anabaena sp. 90]
gi|413970036|gb|AFW94125.1| ribulose bisphosphate carboxylase activase [Anabaena sp. 90]
Length = 407
Score = 379 bits (974), Expect = e-102, Method: Compositional matrix adjust.
Identities = 177/286 (61%), Positives = 222/286 (77%), Gaps = 1/286 (0%)
Query: 33 YIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSA 92
YIAP+F+DKL VHITKNF+++P I+VPLILGI G KG+GK+FQCELVF KMGI ++S
Sbjct: 4 YIAPSFLDKLAVHITKNFLNIPGIRVPLILGIHGRKGEGKTFQCELVFEKMGIEVTLISG 63
Query: 93 GELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLMINDLDAGAGRMGGTTQYTVNNQMV 151
GELES +AG+PA+LIR RYRE A++IK +GKMC LMINDLDAGAGR TQYTVN Q+V
Sbjct: 64 GELESPDAGDPARLIRLRYRETAELIKVRGKMCVLMINDLDAGAGRFDEGTQYTVNTQLV 123
Query: 152 NATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRE 211
NATLMNIADNPT VQLPG Y+ RVPIIVTGNDFSTLYAPLIRDGRM+KFYW P R+
Sbjct: 124 NATLMNIADNPTDVQLPGSYDSNPLCRVPIIVTGNDFSTLYAPLIRDGRMDKFYWEPNRD 183
Query: 212 DRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISGVGVGSIG 271
D++G+ GIF D ++ +I + VDTFP QSIDFF ALR+R+YD+++R +I +G ++
Sbjct: 184 DKVGIVGGIFAEDGLSQKEIAQFVDTFPHQSIDFFSALRSRIYDEQIRHFIHKIGFENVS 243
Query: 272 KSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKY 317
+VNS E P F++P T+ L+E G +V EQ+ V+ L D+Y
Sbjct: 244 LRVVNSLEGPPAFKKPDFTLSHLIESGKFMVGEQKRVETSHLVDEY 289
>gi|209526170|ref|ZP_03274701.1| ribulose bisphosphate carboxylase small chain [Arthrospira maxima
CS-328]
gi|376005139|ref|ZP_09782687.1| Ribulose bisphosphate carboxylase/oxygenase activase [Arthrospira
sp. PCC 8005]
gi|423065450|ref|ZP_17054240.1| ribulose bisphosphate carboxylase/oxygenase activase [Arthrospira
platensis C1]
gi|209493426|gb|EDZ93750.1| ribulose bisphosphate carboxylase small chain [Arthrospira maxima
CS-328]
gi|375326497|emb|CCE18440.1| Ribulose bisphosphate carboxylase/oxygenase activase [Arthrospira
sp. PCC 8005]
gi|406713143|gb|EKD08317.1| ribulose bisphosphate carboxylase/oxygenase activase [Arthrospira
platensis C1]
Length = 434
Score = 379 bits (973), Expect = e-102, Method: Compositional matrix adjust.
Identities = 169/286 (59%), Positives = 228/286 (79%), Gaps = 1/286 (0%)
Query: 33 YIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSA 92
YI+P F+DK+ VHITKNF+ +P IKVPLILGI G KG+GK+FQCELVF MGI P+M+S
Sbjct: 4 YISPRFLDKVSVHITKNFLDIPRIKVPLILGIHGRKGEGKTFQCELVFKTMGIEPVMISG 63
Query: 93 GELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLMINDLDAGAGRMGGTTQYTVNNQMV 151
GELES +AG+P++L+R RYREAA+ ++ KG+MC + IND DAGAGR TQYTVN Q+V
Sbjct: 64 GELESPDAGDPSRLLRLRYREAAEQVRVKGQMCAIFINDFDAGAGRFDSGTQYTVNTQLV 123
Query: 152 NATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRE 211
NATLMNIADNPT VQLPG Y++ R+PII+TGNDFSTLYAPLIRDGRM+KFYW P+RE
Sbjct: 124 NATLMNIADNPTNVQLPGSYDETPLHRIPIIITGNDFSTLYAPLIRDGRMDKFYWEPSRE 183
Query: 212 DRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISGVGVGSIG 271
DRI + +GIF +D+++D I+KLVD F GQ+IDFF A+R+R+YD+++R++I G+ I
Sbjct: 184 DRIAIVRGIFADDSLSDSQIIKLVDDFTGQAIDFFSAMRSRIYDEQIREFIYHQGLDKIS 243
Query: 272 KSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKY 317
+ LVNS + P QP +++ L+E G +V+EQ+ +++++L ++Y
Sbjct: 244 RRLVNSVDKPPELPQPDFSLQHLIESGRAMVEEQQQIQKLRLVEEY 289
>gi|434387097|ref|YP_007097708.1| ATP-dependent 26S proteasome regulatory subunit [Chamaesiphon
minutus PCC 6605]
gi|428018087|gb|AFY94181.1| ATP-dependent 26S proteasome regulatory subunit [Chamaesiphon
minutus PCC 6605]
Length = 302
Score = 379 bits (972), Expect = e-102, Method: Compositional matrix adjust.
Identities = 175/287 (60%), Positives = 228/287 (79%), Gaps = 2/287 (0%)
Query: 33 YIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSA 92
YIAPAF+DKL VHITKNF+ LP +KVPLILG+ G KG+GK+FQCELVF +M + I +SA
Sbjct: 4 YIAPAFLDKLAVHITKNFLDLPGVKVPLILGVHGRKGEGKTFQCELVFDRMKVEAIHISA 63
Query: 93 GELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLMINDLDAGAGRMGGTTQYTVNNQMV 151
GELES +AG+ A+LIR RYREAA+IIK +G+M L+IND+DAGAGR TQYTVN Q+V
Sbjct: 64 GELESPDAGDSARLIRLRYREAAEIIKVRGRMAVLVINDIDAGAGRFDQGTQYTVNTQLV 123
Query: 152 NATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRE 211
NATLMNIAD+PT VQLPG Y+ PR+PIIVTGND STLYAPLIRDGRMEK+YW PTRE
Sbjct: 124 NATLMNIADHPTNVQLPGSYDSTPLPRIPIIVTGNDLSTLYAPLIRDGRMEKYYWVPTRE 183
Query: 212 DRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISGVGVGSIG 271
D+IG+ +GIF DN+++ +IV LVD FP +++DFF A+RAR+YD+++R +I VG+ +
Sbjct: 184 DKIGIVRGIFAPDNISEREIVNLVDRFPDRAVDFFAAMRARIYDEQIRDFIHKVGLERLS 243
Query: 272 KSLVNSKEA-APTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKY 317
+VN PTF +P T+ +L+E+GN++VQEQ++V +L ++Y
Sbjct: 244 IEVVNPASGIKPTFPKPYFTLARLIEFGNLLVQEQKSVDESRLVEEY 290
>gi|119508823|ref|ZP_01627975.1| ribulose 1,5-bisphosphate carboxylase/oxygenase activase [Nodularia
spumigena CCY9414]
gi|119466352|gb|EAW47237.1| ribulose 1,5-bisphosphate carboxylase/oxygenase activase [Nodularia
spumigena CCY9414]
Length = 416
Score = 378 bits (971), Expect = e-102, Method: Compositional matrix adjust.
Identities = 179/286 (62%), Positives = 221/286 (77%), Gaps = 1/286 (0%)
Query: 33 YIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSA 92
YIAP F+DKL VHITKNF++LP ++VPLILGI G KG+GK+FQC+LVF KMGI +S
Sbjct: 4 YIAPRFLDKLGVHITKNFLNLPGVRVPLILGIHGRKGEGKTFQCQLVFEKMGIEVTNISG 63
Query: 93 GELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLMINDLDAGAGRMGGTTQYTVNNQMV 151
GELES +AG+PA+LIR RYRE A++IK +GKMC LMINDLDAGAGR TQYTVN QMV
Sbjct: 64 GELESPDAGDPARLIRLRYRETAELIKVRGKMCVLMINDLDAGAGRFDEGTQYTVNTQMV 123
Query: 152 NATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRE 211
NATLMNIADNPT VQLPG Y+ RVPIIVTGNDFSTLYAPLIRDGRMEKFYW P R+
Sbjct: 124 NATLMNIADNPTDVQLPGSYDSTPLHRVPIIVTGNDFSTLYAPLIRDGRMEKFYWEPDRD 183
Query: 212 DRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISGVGVGSIG 271
D++G+ GIF D ++ ++ +LVDTFP QSIDF+ ALR+R+YD +VR++I VG +
Sbjct: 184 DKVGIVGGIFAEDGLSQREVAQLVDTFPHQSIDFYSALRSRIYDQQVREFIHQVGFERVS 243
Query: 272 KSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKY 317
+VNS E P F++P ++ L+ GN +V EQ+ V+ QL D+Y
Sbjct: 244 SRIVNSAEKPPEFKKPDFSLSNLISAGNFMVGEQQRVETSQLVDEY 289
>gi|354567922|ref|ZP_08987089.1| ribulose bisphosphate carboxylase small chain [Fischerella sp.
JSC-11]
gi|353541596|gb|EHC11063.1| ribulose bisphosphate carboxylase small chain [Fischerella sp.
JSC-11]
Length = 415
Score = 378 bits (970), Expect = e-102, Method: Compositional matrix adjust.
Identities = 188/319 (58%), Positives = 232/319 (72%), Gaps = 11/319 (3%)
Query: 33 YIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSA 92
YI+P F+DK+ VHITKNF+ LP ++VPLILGI G KG+GKSFQCELVF KMG+ +S
Sbjct: 4 YISPRFLDKVAVHITKNFLDLPGLRVPLILGIHGRKGEGKSFQCELVFEKMGVEVTHISG 63
Query: 93 GELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLMINDLDAGAGRMGGTTQYTVNNQMV 151
GELES +AG+PA+LIR RYRE A++IK +GKMC LMINDLDAGAGR TQYTVN Q+V
Sbjct: 64 GELESPDAGDPARLIRLRYRETAELIKVRGKMCVLMINDLDAGAGRFDEGTQYTVNTQLV 123
Query: 152 NATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRE 211
NATLMNIADNPT VQLPG Y+ RVPIIVTGNDFSTLYAPLIRDGRMEKFYW P R+
Sbjct: 124 NATLMNIADNPTDVQLPGSYDPTPLHRVPIIVTGNDFSTLYAPLIRDGRMEKFYWEPDRD 183
Query: 212 DRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISGVGVGSIG 271
D+IG+ GIF D ++ +I +LVDTF QSIDFF ALR+R+YD+++R +I VGV +
Sbjct: 184 DKIGIVGGIFSEDGLSQREIEQLVDTFLNQSIDFFSALRSRIYDEQIRDFIYEVGVERVS 243
Query: 272 KSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKY--------LSE--A 321
+ +VNS E P F +P + L+E GN++V EQ+ V QL +Y LS+ A
Sbjct: 244 RRVVNSLEGPPQFRKPNFNLSHLIEMGNVMVTEQQRVLTSQLVTEYNRGLYSRNLSQPTA 303
Query: 322 ALGEANEDAIQSGNFYGKA 340
+AN+ GN Y K+
Sbjct: 304 TPTQANQPVNNGGNGYHKS 322
>gi|158334944|ref|YP_001516116.1| ribulose bisphosphate carboxylase activase [Acaryochloris marina
MBIC11017]
gi|158305185|gb|ABW26802.1| Ribulose bisphosphate carboxylase activase, putative [Acaryochloris
marina MBIC11017]
Length = 416
Score = 377 bits (969), Expect = e-102, Method: Compositional matrix adjust.
Identities = 177/292 (60%), Positives = 225/292 (77%), Gaps = 1/292 (0%)
Query: 31 GLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMM 90
G Y++P F+D+L VHITKNFM LP ++VPLILGI G KG+GKSFQCEL+F +MGI P+ M
Sbjct: 2 GYYLSPRFLDRLAVHITKNFMDLPGLRVPLILGIHGRKGEGKSFQCELLFEQMGIEPVRM 61
Query: 91 SAGELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLMINDLDAGAGRMGGTTQYTVNNQ 149
SAGELES +AG+P +LIR RYREAA++IK +GKMC L+INDLDAGAGRM TTQYTVN Q
Sbjct: 62 SAGELESPDAGDPVRLIRMRYREAAELIKVRGKMCVLLINDLDAGAGRMDQTTQYTVNTQ 121
Query: 150 MVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPT 209
+VN TLMNIADNPT VQLPG Y+ + RVPI+VTGNDFSTLYAPL+RDGRM+KFYW P
Sbjct: 122 LVNGTLMNIADNPTDVQLPGSYDTQPIRRVPILVTGNDFSTLYAPLVRDGRMDKFYWQPN 181
Query: 210 REDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISGVGVGS 269
EDR+G+ +GIF D ++ I +LV+ F Q+IDFFGALR+R+YD++VR +I +G+G+
Sbjct: 182 HEDRLGIVQGIFEPDRLSSSVIEQLVNHFADQAIDFFGALRSRIYDEQVRDFIRNLGIGN 241
Query: 270 IGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEA 321
+ LVNS E + P +T++ L+ G +V EQ+ + LA YLS A
Sbjct: 242 VSTYLVNSPERQVQIQPPALTLDYLINLGEAMVGEQDRLHHAGLAQAYLSGA 293
>gi|428310574|ref|YP_007121551.1| ribulose bisphosphate carboxylase small subunit [Microcoleus sp.
PCC 7113]
gi|428252186|gb|AFZ18145.1| ribulose bisphosphate carboxylase small subunit [Microcoleus sp.
PCC 7113]
Length = 437
Score = 377 bits (969), Expect = e-102, Method: Compositional matrix adjust.
Identities = 176/286 (61%), Positives = 220/286 (76%), Gaps = 1/286 (0%)
Query: 33 YIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSA 92
YI+P F++KL VHITKN++ LP ++VPLILGI G KG+GKSFQCELVF +MG+ + MSA
Sbjct: 4 YISPRFLNKLSVHITKNYLDLPGVRVPLILGIHGRKGEGKSFQCELVFERMGVEAVHMSA 63
Query: 93 GELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLMINDLDAGAGRMGGTTQYTVNNQMV 151
GELES +AG+PA+LIR RYREAA++I+ +GKM LMINDLDAGAGR TQYTVN Q+V
Sbjct: 64 GELESPDAGDPARLIRLRYREAAELIRVRGKMAVLMINDLDAGAGRFDQGTQYTVNTQLV 123
Query: 152 NATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRE 211
N TLMNIADNPT VQLPG Y+ RVPI+VTGNDFSTLYAPLIRDGRMEKFYW P RE
Sbjct: 124 NGTLMNIADNPTDVQLPGSYDSTPLHRVPILVTGNDFSTLYAPLIRDGRMEKFYWEPDRE 183
Query: 212 DRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISGVGVGSIG 271
DRIG+ GIF D + I +LVDTFPGQ IDFF ALR+R+YD+++ ++I +G I
Sbjct: 184 DRIGIVSGIFSEDGLPRQQIEQLVDTFPGQPIDFFSALRSRIYDEQILQFIQKIGFERIS 243
Query: 272 KSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKY 317
+VNS E AP F +P + +L+E+GN++ EQ+ V+ + L +Y
Sbjct: 244 SRIVNSAEEAPKFPKPNFNLSRLIEFGNLLRGEQKQVENMGLVREY 289
>gi|298491099|ref|YP_003721276.1| ribulose bisphosphate carboxylase small chain ['Nostoc azollae'
0708]
gi|298233017|gb|ADI64153.1| ribulose bisphosphate carboxylase small chain ['Nostoc azollae'
0708]
Length = 408
Score = 377 bits (968), Expect = e-102, Method: Compositional matrix adjust.
Identities = 181/319 (56%), Positives = 229/319 (71%), Gaps = 12/319 (3%)
Query: 33 YIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSA 92
YIAP+F+DKL VHITKNF++LP I+VPLILGI G KG+GKSFQCELVF KMGI ++S
Sbjct: 4 YIAPSFLDKLAVHITKNFLNLPGIRVPLILGIHGRKGEGKSFQCELVFDKMGIETTLISG 63
Query: 93 GELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLMINDLDAGAGRMGGTTQYTVNNQMV 151
GELES +AG+PA+LIR RYRE A++IK +GKMC LMINDLDAGAGR TQYTVN Q+V
Sbjct: 64 GELESSDAGDPARLIRLRYRETAELIKVRGKMCVLMINDLDAGAGRFDEGTQYTVNTQLV 123
Query: 152 NATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRE 211
NATLMNIAD+PT VQLPG Y+ RVPIIVTGNDFSTLYAPL RDGRMEKFYW P R+
Sbjct: 124 NATLMNIADSPTDVQLPGSYDSNPTRRVPIIVTGNDFSTLYAPLTRDGRMEKFYWEPNRD 183
Query: 212 DRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISGVGVGSIG 271
D++G+ GIF D + +I +LVD F QSIDFF LR+R+YD+++R++I +G ++
Sbjct: 184 DKVGMVGGIFAEDALLQREIEQLVDNFAYQSIDFFSTLRSRIYDEQIREFIHTIGFENVS 243
Query: 272 KSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAALGEANEDAI 331
+VNS E P F++P ++ L++ G +V EQ+ V+ QL D+Y + +
Sbjct: 244 SRVVNSAEGPPAFKRPNFSLSHLIDSGKFMVAEQKRVETSQLVDEY-----------NRL 292
Query: 332 QSGNFYGKAAQQMNVPVPE 350
G Y AA PV +
Sbjct: 293 NRGKSYQPAASIAETPVSQ 311
>gi|427707439|ref|YP_007049816.1| ribulose 1,5-bisphosphate carboxylase small subunit [Nostoc sp. PCC
7107]
gi|427359944|gb|AFY42666.1| ribulose 1,5-bisphosphate carboxylase small subunit [Nostoc sp. PCC
7107]
Length = 415
Score = 377 bits (967), Expect = e-102, Method: Compositional matrix adjust.
Identities = 178/323 (55%), Positives = 234/323 (72%), Gaps = 12/323 (3%)
Query: 33 YIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSA 92
YIAP F+DK+ VHITKNF++LP ++VPLILGI G KG+GK+FQCEL F KMG+ ++S
Sbjct: 4 YIAPRFLDKIAVHITKNFLNLPGVRVPLILGIHGRKGEGKTFQCELAFEKMGVEVTLISG 63
Query: 93 GELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLMINDLDAGAGRMGGTTQYTVNNQMV 151
GELES +AG+PA+LIR RYRE A+ +K +G+MC LMINDLDAGAGR TQYTVN Q+V
Sbjct: 64 GELESPDAGDPARLIRLRYRETAEQVKVRGRMCVLMINDLDAGAGRFDEGTQYTVNTQLV 123
Query: 152 NATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRE 211
NATLMNIADNPT VQLPG Y+ RVPIIVTGNDFSTLYAPLIRDGRMEKFYW P R+
Sbjct: 124 NATLMNIADNPTDVQLPGSYDSNPIRRVPIIVTGNDFSTLYAPLIRDGRMEKFYWEPNRD 183
Query: 212 DRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISGVGVGSIG 271
+++G+ GIF D ++ ++ + VDTFP QSIDFF A+R+R+YD+++RK+I +G +I
Sbjct: 184 EKVGIVGGIFVEDGLSSREVEQFVDTFPNQSIDFFSAVRSRIYDEQIRKFIHEIGFENIS 243
Query: 272 KSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAALGEANEDAI 331
+VNS E PTF++P + L+E G+ +V EQ+ V+ QL D+Y + +
Sbjct: 244 LRVVNSVEGPPTFKKPNFNLSHLIESGHFMVGEQKRVENSQLVDEY-----------NRL 292
Query: 332 QSGNFYGKAAQQMNVPVPEGCTD 354
G Y A ++ P+ + T+
Sbjct: 293 NRGRSYQVAPPKVETPISQPSTN 315
>gi|359457374|ref|ZP_09245937.1| ribulose bisphosphate carboxylase small chain [Acaryochloris sp.
CCMEE 5410]
Length = 416
Score = 376 bits (965), Expect = e-101, Method: Compositional matrix adjust.
Identities = 176/292 (60%), Positives = 225/292 (77%), Gaps = 1/292 (0%)
Query: 31 GLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMM 90
G Y++P F+D+L VHITKNFM LP ++VPLILGI G KG+GKSFQCEL+F +MGI P+ M
Sbjct: 2 GYYLSPRFLDRLAVHITKNFMDLPGLRVPLILGIHGRKGEGKSFQCELLFEQMGIEPVRM 61
Query: 91 SAGELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLMINDLDAGAGRMGGTTQYTVNNQ 149
SAGELES +AG+P +LIR RYREAA++IK +GKMC L+INDLDAGA RM TTQYTVN Q
Sbjct: 62 SAGELESPDAGDPVRLIRMRYREAAELIKVRGKMCVLLINDLDAGASRMDQTTQYTVNTQ 121
Query: 150 MVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPT 209
+VN TLMNIADNPT VQLPG Y+ + RVPI+VTGNDFSTLYAPL+RDGRM+KFYW P+
Sbjct: 122 LVNGTLMNIADNPTDVQLPGSYDTQPIRRVPILVTGNDFSTLYAPLVRDGRMDKFYWQPS 181
Query: 210 REDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISGVGVGS 269
EDR+G+ +GIF D ++ I +LV+ F Q+IDFFGALR+R+YD++VR +I +G+G+
Sbjct: 182 DEDRLGIVQGIFEPDRLSSSVIEQLVNHFADQAIDFFGALRSRIYDEQVRDFIRNLGIGN 241
Query: 270 IGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEA 321
+ LVNS E + P + ++ L+E G +V EQ+ + LA YLS A
Sbjct: 242 VSTYLVNSPERQVQIQPPALALDYLIELGEAMVGEQDRLHHAGLAQAYLSGA 293
>gi|443478603|ref|ZP_21068337.1| AAA ATPase central domain protein [Pseudanabaena biceps PCC 7429]
gi|443016085|gb|ELS30823.1| AAA ATPase central domain protein [Pseudanabaena biceps PCC 7429]
Length = 297
Score = 375 bits (964), Expect = e-101, Method: Compositional matrix adjust.
Identities = 177/287 (61%), Positives = 220/287 (76%), Gaps = 1/287 (0%)
Query: 33 YIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSA 92
YI+P F+DKL VH+ KNFM LPN+ VPLILGI GGKG+GKSFQCEL F K+GI PI MS
Sbjct: 4 YISPRFLDKLAVHLAKNFMKLPNVTVPLILGIHGGKGEGKSFQCELAFEKLGIEPIRMSG 63
Query: 93 GELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLMINDLDAGAGRMGGTTQYTVNNQMV 151
GELES +AG+PA+LIR RYREAA+++K +GKMC L+INDLDAGAGR+ TTQYTVN Q+V
Sbjct: 64 GELESPDAGDPARLIRMRYREAAELVKVRGKMCALLINDLDAGAGRVDSTTQYTVNTQLV 123
Query: 152 NATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRE 211
NATLMNIADNPT VQLPG Y+ RVPIIVTGNDFSTLYAPL+RDGRMEKF+W P R
Sbjct: 124 NATLMNIADNPTNVQLPGSYDSNPIRRVPIIVTGNDFSTLYAPLVRDGRMEKFFWMPDRT 183
Query: 212 DRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISGVGVGSIG 271
DRIG+ GIF DN+ +I +LVD +P +SIDFFG+LR+ +YD++VRK++ +G+ +
Sbjct: 184 DRIGIVSGIFAPDNIPQWEIERLVDMYPDRSIDFFGSLRSSLYDEQVRKFVYDIGLERLS 243
Query: 272 KSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYL 318
LVNS EA P F P + L E G+ ++ E + V + L +Y+
Sbjct: 244 LRLVNSTEALPEFRPPSFDLRTLKEAGDRLLAEGDRVSQRNLIQEYM 290
>gi|428220631|ref|YP_007104801.1| ribulose bisphosphate carboxylase small subunit [Synechococcus sp.
PCC 7502]
gi|427993971|gb|AFY72666.1| ribulose bisphosphate carboxylase small subunit [Synechococcus sp.
PCC 7502]
Length = 418
Score = 375 bits (964), Expect = e-101, Method: Compositional matrix adjust.
Identities = 175/289 (60%), Positives = 224/289 (77%), Gaps = 2/289 (0%)
Query: 33 YIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSA 92
YI+P F+DKL VHITKNF++LP + VPLILGI G KG+GKSFQCELVF MGI P+ MSA
Sbjct: 4 YISPRFLDKLAVHITKNFLNLPGLTVPLILGIHGRKGEGKSFQCELVFKLMGIEPVRMSA 63
Query: 93 GELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLMINDLDAGAGRMGGTTQYTVNNQMV 151
GELES +AG+P +LIR RYREAAD+IK +GKMC L+IND+DAGAGR+ +TQYTVN Q+V
Sbjct: 64 GELESPDAGDPVRLIRTRYREAADLIKVRGKMCVLLINDIDAGAGRVDSSTQYTVNTQLV 123
Query: 152 NATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRE 211
N TLMNIADNPT VQLPG Y E RVPI++TGNDFSTLYAPL+RDGRMEKFYW PT+E
Sbjct: 124 NGTLMNIADNPTDVQLPGSYETEPISRVPILLTGNDFSTLYAPLLRDGRMEKFYWEPTKE 183
Query: 212 DRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISGVGVGSIG 271
DRIG+ GIF+ D + + ++ +L+ FP QSIDFFGALR++VYD +VR +I +G+ +
Sbjct: 184 DRIGIVTGIFKADGLTEQNVEELISNFPHQSIDFFGALRSQVYDQQVRDFIREIGINKVS 243
Query: 272 KSLVNSKEAAPTFEQ-PRMTMEKLLEYGNMIVQEQENVKRVQLADKYLS 319
+VN+ + F+Q P + L++ GNM+V EQ+ V+ L ++Y +
Sbjct: 244 THIVNNPDLTVKFQQSPNFGLPYLIKLGNMMVHEQQRVQSRGLVEEYTT 292
>gi|440681100|ref|YP_007155895.1| ribulose 1,5-bisphosphate carboxylase small subunit [Anabaena
cylindrica PCC 7122]
gi|428678219|gb|AFZ56985.1| ribulose 1,5-bisphosphate carboxylase small subunit [Anabaena
cylindrica PCC 7122]
Length = 414
Score = 375 bits (964), Expect = e-101, Method: Compositional matrix adjust.
Identities = 177/286 (61%), Positives = 218/286 (76%), Gaps = 1/286 (0%)
Query: 33 YIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSA 92
YIAP+F+DKL VHITKNF+ LP ++VPLILGI G KG+GK+FQCEL F KMGI ++S
Sbjct: 4 YIAPSFLDKLAVHITKNFLHLPGVRVPLILGIHGRKGEGKTFQCELAFEKMGIEVTLISG 63
Query: 93 GELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLMINDLDAGAGRMGGTTQYTVNNQMV 151
GELES +AG+PA+LIR RYRE A++IK +GKMC LMINDLDAGAGR TQYTVN Q+V
Sbjct: 64 GELESPDAGDPARLIRLRYRETAELIKVRGKMCVLMINDLDAGAGRFDEGTQYTVNTQLV 123
Query: 152 NATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRE 211
NATLMNIADNPT VQLPG Y+ RVPIIVTGNDFSTLYAPLIRDGRMEKFYW P R+
Sbjct: 124 NATLMNIADNPTDVQLPGSYDSTPLHRVPIIVTGNDFSTLYAPLIRDGRMEKFYWEPNRD 183
Query: 212 DRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISGVGVGSIG 271
D++G+ GIF D + +I +LVDTF Q+IDFF +LR+R+YD ++R +I VG I
Sbjct: 184 DKVGIVGGIFAPDGFSQREIEELVDTFANQAIDFFSSLRSRIYDQQIRNFIHQVGFEQIS 243
Query: 272 KSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKY 317
K +VNS E P F++P + L+E G ++V EQ+ V+ L D+Y
Sbjct: 244 KRVVNSLEGPPEFKKPNFNLSHLIESGKLMVGEQKRVETSHLVDEY 289
>gi|427736905|ref|YP_007056449.1| ribulose bisphosphate carboxylase small subunit [Rivularia sp. PCC
7116]
gi|427371946|gb|AFY55902.1| ribulose bisphosphate carboxylase small subunit [Rivularia sp. PCC
7116]
Length = 787
Score = 374 bits (959), Expect = e-101, Method: Compositional matrix adjust.
Identities = 181/333 (54%), Positives = 235/333 (70%), Gaps = 7/333 (2%)
Query: 33 YIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSA 92
YI+P F DKL VHITKN++ LP ++VPLILGI G KG+GKSFQCELVF KMG+ +S
Sbjct: 4 YISPRFQDKLSVHITKNYLDLPKVRVPLILGIHGRKGEGKSFQCELVFEKMGVEVTHISG 63
Query: 93 GELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLMINDLDAGAGRMGGTTQYTVNNQMV 151
GELES +AG+PA+LIR RYRE A++IK +GKMC LMINDLDAGAGR TQYTVN Q+V
Sbjct: 64 GELESPDAGDPARLIRLRYRETAELIKVRGKMCVLMINDLDAGAGRFDEGTQYTVNTQLV 123
Query: 152 NATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRE 211
NATLMNIADNPT VQLPG Y+ RVPIIVTGNDFSTLYAPLIRDGRMEKFYW PTRE
Sbjct: 124 NATLMNIADNPTDVQLPGSYDSTPLHRVPIIVTGNDFSTLYAPLIRDGRMEKFYWEPTRE 183
Query: 212 DRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISGVGVGSIG 271
D++G+ GIF D ++ D+ +LVD F Q++DF+ ALR+R+YD+++R++I GV +
Sbjct: 184 DKVGIIGGIFSEDGLSKQDVEQLVDHFGNQAVDFYSALRSRIYDEQIRRFIQNKGVDRVS 243
Query: 272 KSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAALGEANEDAI 331
+VNS P+F++P+ + L+E +++V+EQ+ V L ++Y + AL
Sbjct: 244 SQVVNSNN-IPSFQKPKFGLSDLMEVASLMVEEQQRVDNSHLVEEY-NRGALRHQKHFVP 301
Query: 332 QSGN---FYGKAAQQMNVPVPEGCTDPTAENFD 361
Q+ + + + +P PTA NFD
Sbjct: 302 QAAPTPVYEARPTSHFDANLPTYQARPTA-NFD 333
>gi|427419082|ref|ZP_18909265.1| ribulose bisphosphate carboxylase small subunit [Leptolyngbya sp.
PCC 7375]
gi|425761795|gb|EKV02648.1| ribulose bisphosphate carboxylase small subunit [Leptolyngbya sp.
PCC 7375]
Length = 428
Score = 367 bits (941), Expect = 7e-99, Method: Compositional matrix adjust.
Identities = 176/331 (53%), Positives = 245/331 (74%), Gaps = 9/331 (2%)
Query: 33 YIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSA 92
YI+P F++ L VHITKNF+ LP +K+PLI GI G KG+GK+FQCELV+ +MG+N + +S
Sbjct: 4 YISPRFLNALAVHITKNFLELPQVKLPLIFGIHGRKGEGKTFQCELVYKRMGVNVVHISG 63
Query: 93 GELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLMINDLDAGAGRMGGTTQYTVNNQMV 151
GELES +AG+PA+LIR RYREAAD++K +G+M LMINDLDAGAGR G TQYTVN Q+V
Sbjct: 64 GELESPDAGDPARLIRLRYREAADLVKIRGEMAVLMINDLDAGAGRFDGMTQYTVNTQLV 123
Query: 152 NATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRE 211
N TLMNIADNPT VQLPG Y++ PR+PI+VTGNDF+TLYAPL+RDGRM+KFYW P R+
Sbjct: 124 NNTLMNIADNPTNVQLPGSYDETPLPRIPIVVTGNDFATLYAPLVRDGRMQKFYWEPNRD 183
Query: 212 DRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISGVGVGSIG 271
DR+G+ GIF D+++ +DI LVDTFP Q+IDF+GALR+++YD+++ +I VGV ++
Sbjct: 184 DRLGIVGGIFSPDDLSRNDIETLVDTFPNQAIDFYGALRSQIYDEQIIDFIHRVGVENVS 243
Query: 272 KSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAALGEANEDAI 331
+++VN+K P+F++P + L+E G +V+EQ ++ + L +Y AL + E+
Sbjct: 244 RNVVNTK-TPPSFKKPDFRIGHLIEVGQRLVREQRRLQEMGLVQEY--NQALNKVEENRS 300
Query: 332 Q-SGNFYGKAAQQMNVPV----PEGCTDPTA 357
+GN+Y +VP+ P G ++ A
Sbjct: 301 NGNGNYYRAYQPAPSVPLQPVEPNGASNTPA 331
>gi|119486453|ref|ZP_01620511.1| AAA ATPase, central region [Lyngbya sp. PCC 8106]
gi|119456355|gb|EAW37486.1| AAA ATPase, central region [Lyngbya sp. PCC 8106]
Length = 445
Score = 366 bits (940), Expect = 8e-99, Method: Compositional matrix adjust.
Identities = 167/286 (58%), Positives = 219/286 (76%), Gaps = 2/286 (0%)
Query: 33 YIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSA 92
YI+P F+DKL VHITKNF+ + N++VPLILGI G KG+GK+FQCELVF KMG P+ +S
Sbjct: 4 YISPRFLDKLAVHITKNFLKISNLRVPLILGIHGRKGEGKTFQCELVFEKMGFEPVTISG 63
Query: 93 GELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLMINDLDAGAGRMGGTTQYTVNNQMV 151
GELES +AG+P++LIR RYREA++ K +G+MC L IND+DAGAGR TQYTVN Q+V
Sbjct: 64 GELESPDAGDPSRLIRLRYREASEQTKVRGQMCALFINDIDAGAGRFDSGTQYTVNTQLV 123
Query: 152 NATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRE 211
NATLMNIADNPT VQLPG Y++ R+PIIVTGNDFSTLYAPLIRDGRMEKFYW P +
Sbjct: 124 NATLMNIADNPTNVQLPGSYDETPLQRIPIIVTGNDFSTLYAPLIRDGRMEKFYWEPNSK 183
Query: 212 DRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISGVGVGSIG 271
+R+ + +GIF+ + + DI+KLVD FP QS+DFF ALR+R+YD++++ +I +G+ I
Sbjct: 184 ERVEIVEGIFQQE-LLKQDIIKLVDEFPEQSVDFFSALRSRIYDEQIQSFIHQMGIEKIS 242
Query: 272 KSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKY 317
K +VNS E P F +P LLE G+ +V EQ ++ ++L ++Y
Sbjct: 243 KRIVNSTEKPPEFNKPNFKFSHLLEMGHQMVAEQRRIQELRLVEEY 288
>gi|443316141|ref|ZP_21045597.1| ribulose bisphosphate carboxylase small subunit [Leptolyngbya sp.
PCC 6406]
gi|442784241|gb|ELR94125.1| ribulose bisphosphate carboxylase small subunit [Leptolyngbya sp.
PCC 6406]
Length = 461
Score = 365 bits (937), Expect = 2e-98, Method: Compositional matrix adjust.
Identities = 172/297 (57%), Positives = 226/297 (76%), Gaps = 4/297 (1%)
Query: 33 YIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSA 92
YI+P F+DKL +HITKN++SLP+++VP+ILG+ G KG+GK+FQCELV+ +MG+ + +S
Sbjct: 4 YISPRFLDKLAIHITKNYLSLPDVRVPVILGVHGRKGEGKTFQCELVYERMGVEVVAISG 63
Query: 93 GELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLMINDLDAGAGRMGGTTQYTVNNQMV 151
GELES +AG+PA+LIR RYREAA++++ +G M LMINDLDAGAGR TQYTVN Q+V
Sbjct: 64 GELESPDAGDPARLIRLRYREAAELVRVRGVMAVLMINDLDAGAGRFDALTQYTVNTQLV 123
Query: 152 NATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRE 211
N TLMNIADNPT VQLPG Y+ + RVPII TGNDFSTLY PL+RDGRMEKFYW P R
Sbjct: 124 NNTLMNIADNPTNVQLPGSYDDQPIRRVPIIATGNDFSTLYEPLVRDGRMEKFYWMPDRS 183
Query: 212 DRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISGVGVGSIG 271
DRIG+ GIF D + I +LVDTF Q++DFFGALRAR+YD++VR +I VG+ +
Sbjct: 184 DRIGIVAGIFEPDQLGTAAIEQLVDTFSQQAVDFFGALRARIYDEQVRDFIQSVGLDKVS 243
Query: 272 KSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAALGEANE 328
+ +VNS E +PTF +P T+ L+E G +V EQ+ ++ ++L D+Y AL E N+
Sbjct: 244 QRVVNS-ETSPTFTRPTFTLSHLIEVGQQMVIEQQWLQEMRLGDQY--NRALREKND 297
>gi|19988|emb|CAA78702.1| ribulose bisphosphate carboxylase activase [Nicotiana tabacum]
Length = 206
Score = 362 bits (928), Expect = 2e-97, Method: Compositional matrix adjust.
Identities = 170/204 (83%), Positives = 185/204 (90%)
Query: 135 AGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAP 194
AGRMGGTTQYTVNNQMVNATLMNIADNPT VQLPGMYNK+EN RVPIIVTGNDFSTLYAP
Sbjct: 2 AGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFSTLYAP 61
Query: 195 LIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVY 254
LIRDGRMEKFYWAPTREDRIGVC GIFR DNV +D+VK+VD FPGQSIDFFGALRARVY
Sbjct: 62 LIRDGRMEKFYWAPTREDRIGVCTGIFRTDNVPAEDVVKIVDNFPGQSIDFFGALRARVY 121
Query: 255 DDEVRKWISGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLA 314
DDEVRKW+SG G+ IG L+NS + PTFEQP+MT+EKLLEYGNM+VQEQENVKRVQLA
Sbjct: 122 DDEVRKWVSGTGIEKIGDKLLNSFDGPPTFEQPKMTIEKLLEYGNMLVQEQENVKRVQLA 181
Query: 315 DKYLSEAALGEANEDAIQSGNFYG 338
DKYL EAALG+AN DAI +G+F+
Sbjct: 182 DKYLKEAALGDANADAINNGSFFA 205
>gi|254422770|ref|ZP_05036488.1| ribulose bisphosphate carboxylase, small subunit, putative
[Synechococcus sp. PCC 7335]
gi|196190259|gb|EDX85223.1| ribulose bisphosphate carboxylase, small subunit, putative
[Synechococcus sp. PCC 7335]
Length = 455
Score = 360 bits (924), Expect = 6e-97, Method: Compositional matrix adjust.
Identities = 162/286 (56%), Positives = 225/286 (78%), Gaps = 2/286 (0%)
Query: 33 YIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSA 92
YIAP F++KL VHITKN++ LP +KVPLILGI G KG+GK+FQCELVF +MG+ + +S
Sbjct: 4 YIAPRFLNKLAVHITKNYLDLPQVKVPLILGIHGRKGEGKTFQCELVFERMGVEVVHISG 63
Query: 93 GELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLMINDLDAGAGRMGGTTQYTVNNQMV 151
GELES +AG+PA+LIR RYREAA++++ +G+M LMINDLDAGAGR TQYTVN Q+V
Sbjct: 64 GELESPDAGDPARLIRLRYREAAELVRVRGRMAVLMINDLDAGAGRFDRMTQYTVNTQLV 123
Query: 152 NATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRE 211
N TLMNIADNPT VQLPG Y+++ PR+PII TGNDF+TLYAPLIRDGRM+KFYW P+ E
Sbjct: 124 NNTLMNIADNPTNVQLPGSYDEKALPRIPIIATGNDFATLYAPLIRDGRMQKFYWQPSEE 183
Query: 212 DRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISGVGVGSIG 271
DR+G+ G+F D ++ +DI +LV F Q++DFFGA+R+++YD+++ ++I VG+ +
Sbjct: 184 DRVGIVGGMFAGDGLSAEDIEQLVKQFKDQAVDFFGAVRSQLYDEQITRFIEQVGIEKVA 243
Query: 272 KSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKY 317
++VN+ + PTF +P T++ L+ GN +V+EQ+ V+ + L ++Y
Sbjct: 244 TNVVNTPQ-KPTFNRPHFTLDHLVAAGNTLVEEQDRVRTMGLVNEY 288
>gi|428210200|ref|YP_007094553.1| ribulose 1,5-bisphosphate carboxylase small subunit
[Chroococcidiopsis thermalis PCC 7203]
gi|428012121|gb|AFY90684.1| ribulose 1,5-bisphosphate carboxylase small subunit
[Chroococcidiopsis thermalis PCC 7203]
Length = 475
Score = 358 bits (918), Expect = 3e-96, Method: Compositional matrix adjust.
Identities = 161/273 (58%), Positives = 216/273 (79%), Gaps = 1/273 (0%)
Query: 33 YIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSA 92
YIAP F++K+ V ITKN++++P I+VPLILG+ G KG+GKSFQC+LVF KMGI +S
Sbjct: 4 YIAPRFLEKIAVFITKNYLNIPGIRVPLILGVHGRKGEGKSFQCDLVFEKMGIEITHISG 63
Query: 93 GELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLMINDLDAGAGRMGGTTQYTVNNQMV 151
GELES +AG+P++L+R RYRE A++I+ +GKMC +MINDLDAGAGR TQYTVN Q+V
Sbjct: 64 GELESPDAGDPSRLLRLRYRETAELIRVRGKMCAIMINDLDAGAGRFDEGTQYTVNTQLV 123
Query: 152 NATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRE 211
NATLMNIADNPT VQLPG Y++ RVPIIVTGNDFSTLYAPLIRDGRMEKFYW P R
Sbjct: 124 NATLMNIADNPTNVQLPGSYDETPLHRVPIIVTGNDFSTLYAPLIRDGRMEKFYWQPDRS 183
Query: 212 DRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISGVGVGSIG 271
D++G+ GI+ +D ++ +I +LVDTF QS+DFF ALR+R+YD+++R +I +G+ +
Sbjct: 184 DKVGIVAGIYSDDGLSSREIEQLVDTFSNQSVDFFSALRSRIYDEQIRDFIFKIGIEQVS 243
Query: 272 KSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQE 304
+ +VNS + P F +P+ + +L+E GN++V+E
Sbjct: 244 RRVVNSADRPPEFSKPKFNLSRLIEMGNLMVKE 276
>gi|428215450|ref|YP_007088594.1| ribulose bisphosphate carboxylase small subunit [Oscillatoria
acuminata PCC 6304]
gi|428003831|gb|AFY84674.1| ribulose bisphosphate carboxylase small subunit [Oscillatoria
acuminata PCC 6304]
Length = 435
Score = 356 bits (913), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 171/286 (59%), Positives = 212/286 (74%), Gaps = 2/286 (0%)
Query: 33 YIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSA 92
YIAP F++KL VHITKNF+ LP I PLILGI G KG+GKSFQCELVF +M + I +SA
Sbjct: 4 YIAPRFLNKLAVHITKNFLDLPGINAPLILGIHGHKGEGKSFQCELVFQRMKVQAIHLSA 63
Query: 93 GELESGNAGEPAKLIRQRYREAADII-KKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMV 151
GELES +AG+P++L+R RYREAADII K GK+ LMIND+DAGAGR+ TQYTVN Q+V
Sbjct: 64 GELESPDAGDPSRLVRFRYREAADIITKHGKLAVLMINDIDAGAGRVDSGTQYTVNTQLV 123
Query: 152 NATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRE 211
NATLMNIADNPT VQLPG Y+ E PRVPIIVTGNDF TLYAPL+RDGRM+KFYW P RE
Sbjct: 124 NATLMNIADNPTNVQLPGSYDSEPLPRVPIIVTGNDFGTLYAPLVRDGRMDKFYWEPNRE 183
Query: 212 DRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISGVGVGSIG 271
DR+ + GIF D + I +LV F GQSIDFF ALRA +YD+++ +I G IG
Sbjct: 184 DRLEIVNGIFTPDGLNRQQIEQLVSKFEGQSIDFFSALRASIYDEQILAFIEQTGFDKIG 243
Query: 272 KSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKY 317
+ NS E +F +P +E L+E G +V+EQ++++ ++L Y
Sbjct: 244 LKVANSTEKH-SFIKPDFRLEHLIEKGEQMVKEQQHIQELRLVAAY 288
>gi|86605146|ref|YP_473909.1| ribulose bisphosphate carboxylase/oxygenase activase [Synechococcus
sp. JA-3-3Ab]
gi|86553688|gb|ABC98646.1| ribulose bisphosphate carboxylase/oxygenase activase [Synechococcus
sp. JA-3-3Ab]
Length = 407
Score = 355 bits (912), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 165/287 (57%), Positives = 220/287 (76%), Gaps = 1/287 (0%)
Query: 33 YIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSA 92
YI P F+ + +H+TKN + LP++ VPLILGI G KG+GK+FQC L+F +M + + +S
Sbjct: 4 YIPPTFLKVVALHLTKNHLPLPDVPVPLILGIHGRKGEGKTFQCNLIFERMKVYAVHISG 63
Query: 93 GELESGNAGEPAKLIRQRYREAADIIKK-GKMCCLMINDLDAGAGRMGGTTQYTVNNQMV 151
GELES +AG+PA++IR RYREAA+ I+K G+M LMINDLDAGAGR+ TQYTVN Q+V
Sbjct: 64 GELESPDAGDPARMIRLRYREAAEHIRKFGQMAVLMINDLDAGAGRLNSMTQYTVNTQLV 123
Query: 152 NATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRE 211
+ATLMNIADNPT VQLPG Y+ + PRVPII TGNDFSTLYAPLIRDGRM KFYW P+R
Sbjct: 124 SATLMNIADNPTNVQLPGSYDPKPLPRVPIIATGNDFSTLYAPLIRDGRMRKFYWEPSRT 183
Query: 212 DRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISGVGVGSIG 271
DRI + GIF+ D ++ ++I +LVD FP Q+IDFFGALRA++YD++V ++I VG+ I
Sbjct: 184 DRIHIVHGIFQADGLSLEEIERLVDAFPEQAIDFFGALRAQLYDEQVWQFIQEVGLEGIA 243
Query: 272 KSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYL 318
L+ SKE AP F PR ++E+L++ G+ + EQ V+ +L+++YL
Sbjct: 244 FRLLKSKEGAPQFPPPRFSLEQLIQAGHQLKAEQHQVEARRLSEEYL 290
>gi|254416331|ref|ZP_05030084.1| ribulose bisphosphate carboxylase, small subunit, putative
[Coleofasciculus chthonoplastes PCC 7420]
gi|196176769|gb|EDX71780.1| ribulose bisphosphate carboxylase, small subunit, putative
[Coleofasciculus chthonoplastes PCC 7420]
Length = 447
Score = 355 bits (910), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 174/286 (60%), Positives = 218/286 (76%), Gaps = 1/286 (0%)
Query: 33 YIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSA 92
YIAP+F DKL VHITKN++ L ++VPLILGI G KG+GKSFQCELVF +MGI I +S
Sbjct: 9 YIAPSFRDKLAVHITKNYLELEGVRVPLILGIHGRKGEGKSFQCELVFEQMGIGIIHISG 68
Query: 93 GELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLMINDLDAGAGRMGGTTQYTVNNQMV 151
GELES +AG+PA+LIR RYREAA++IK +GKMC LMINDLDAG GR TTQYTVN Q+V
Sbjct: 69 GELESPDAGDPARLIRLRYREAAEMIKVQGKMCGLMINDLDAGVGRFDSTTQYTVNTQLV 128
Query: 152 NATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRE 211
+ATLMNIAD+PT VQLPG Y+ RVPIIVTGNDFSTLYAPLIR+GRMEK+YW P+RE
Sbjct: 129 SATLMNIADHPTDVQLPGSYDANPLHRVPIIVTGNDFSTLYAPLIREGRMEKYYWEPSRE 188
Query: 212 DRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISGVGVGSIG 271
+RIG+ GIF D + DI +LVD FP Q+IDFF ALR+R+YD ++ +I VG+ +
Sbjct: 189 ERIGIVGGIFAADGLPRRDIEQLVDQFPDQAIDFFSALRSRIYDQQILHFIHDVGLDQVS 248
Query: 272 KSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKY 317
+V S EA P FE+P + L+E+G +++ EQ V++ L +Y
Sbjct: 249 FRVVRSTEAPPEFEKPNFDISHLIEFGQVMIGEQRQVEQTGLVREY 294
>gi|37783283|gb|AAP72270.1| ribulose-1,5-bisphosphate carboxylase activase [Triticum aestivum]
Length = 201
Score = 345 bits (886), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 156/201 (77%), Positives = 183/201 (91%)
Query: 175 ENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKL 234
ENPRVPI+VTGNDFSTLYAPLIRDGRMEKFYWAPTR+DRIGVCKGIF+ DNV+D+ +VK+
Sbjct: 1 ENPRVPIVVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRIGVCKGIFQTDNVSDESVVKI 60
Query: 235 VDTFPGQSIDFFGALRARVYDDEVRKWISGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKL 294
VDTFPGQSIDFFGALRARVYDDEVRKW++ G+ +IGK LVNS++ TFEQP+MT+EKL
Sbjct: 61 VDTFPGQSIDFFGALRARVYDDEVRKWVTSTGIENIGKKLVNSRDGPVTFEQPKMTVEKL 120
Query: 295 LEYGNMIVQEQENVKRVQLADKYLSEAALGEANEDAIQSGNFYGKAAQQMNVPVPEGCTD 354
LEYG+M+VQEQ+NVKRVQLAD Y+S+AALG+AN+DA+++G FYGK AQQ +PVP GCTD
Sbjct: 121 LEYGHMLVQEQDNVKRVQLADTYMSQAALGDANQDAMKTGTFYGKGAQQGTLPVPAGCTD 180
Query: 355 PTAENFDPTARSDDGSCQYTL 375
TA+NFDPTARSDDGSC YT
Sbjct: 181 QTAKNFDPTARSDDGSCLYTF 201
>gi|13569643|gb|AAK31173.1| ribulose-1,5-bisphosphate carboxylase activase [Oryza sativa Indica
Group]
Length = 193
Score = 337 bits (863), Expect = 6e-90, Method: Compositional matrix adjust.
Identities = 156/190 (82%), Positives = 177/190 (93%)
Query: 151 VNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTR 210
VNATLMNIADNPT VQLPGMYNKE+NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTR
Sbjct: 1 VNATLMNIADNPTNVQLPGMYNKEDNPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTR 60
Query: 211 EDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISGVGVGSI 270
+DR+GVCKGIFR DNV D+DIVK+VD+FPGQSIDFFGALRARVYDDEVRKW+S GV +I
Sbjct: 61 DDRVGVCKGIFRTDNVPDEDIVKIVDSFPGQSIDFFGALRARVYDDEVRKWVSDTGVENI 120
Query: 271 GKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAALGEANEDA 330
GK LVNS+E P FEQP+MT+EKL+EYG M+V+EQENVKRVQLA++YLSEAALG+AN DA
Sbjct: 121 GKRLVNSREGPPEFEQPKMTIEKLIEYGYMLVKEQENVKRVQLAEQYLSEAALGDANSDA 180
Query: 331 IQSGNFYGKA 340
+++G+FYG A
Sbjct: 181 MKTGSFYGSA 190
>gi|307102907|gb|EFN51173.1| hypothetical protein CHLNCDRAFT_141315 [Chlorella variabilis]
Length = 295
Score = 337 bits (863), Expect = 6e-90, Method: Compositional matrix adjust.
Identities = 167/264 (63%), Positives = 196/264 (74%), Gaps = 30/264 (11%)
Query: 71 GKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMIND 130
GK+FQC L + K+GI PI+MSAGELESGNAGEPAKLIRQRYREA+D+IKKG+MC L IND
Sbjct: 50 GKTFQCNLAYKKLGIAPIVMSAGELESGNAGEPAKLIRQRYREASDVIKKGRMCSLFIND 109
Query: 131 LDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFST 190
LDAGAGRMG TQYTVNNQMVNATLMNIADNPT VQLPG+Y EE PRVPI
Sbjct: 110 LDAGAGRMGDATQYTVNNQMVNATLMNIADNPTNVQLPGVYKNEEIPRVPI--------- 160
Query: 191 LYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALR 250
DRIGVC GIF++DNV D+ KLVD FPGQSIDFFGA+R
Sbjct: 161 ---------------------DRIGVCMGIFQHDNVDRADVEKLVDAFPGQSIDFFGAIR 199
Query: 251 ARVYDDEVRKWISGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKR 310
ARVYDD+V WI G GV +IGK L+NSKE TF++P M + L++YGN++V+EQENVKR
Sbjct: 200 ARVYDDKVHDWIMGTGVENIGKRLINSKEGKVTFDKPSMDLGTLMKYGNLLVEEQENVKR 259
Query: 311 VQLADKYLSEAALGEANEDAIQSG 334
VQLAD+Y+S AAL ++ ++ G
Sbjct: 260 VQLADEYMSGAALAGSSGSSLPEG 283
>gi|224057192|ref|XP_002299165.1| predicted protein [Populus trichocarpa]
gi|222846423|gb|EEE83970.1| predicted protein [Populus trichocarpa]
Length = 428
Score = 336 bits (861), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 159/292 (54%), Positives = 216/292 (73%), Gaps = 7/292 (2%)
Query: 33 YIAPAFMDKLVVHITKNFMSLP-NIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMS 91
YIAP F+DK+V HI KN+++ N+KVPLILGIWGGKGQGKSFQ EL+F +G+ P++MS
Sbjct: 133 YIAPLFLDKVVCHIVKNYLAHRLNVKVPLILGIWGGKGQGKSFQTELIFQTLGVEPVIMS 192
Query: 92 AGELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLMINDLDAGAGRMGGTTQYTVNNQM 150
AGELES AGEP +LIR+RYR A+ +++ +GKM CLMINDLDAG GR G TQ TVNNQ+
Sbjct: 193 AGELESERAGEPGRLIRERYRTASQVVQNQGKMSCLMINDLDAGLGRFG-NTQMTVNNQI 251
Query: 151 VNATLMNIADNPTCVQLPGMYNKEE-NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPT 209
V TLMN++DNPT V + + + + RVPIIVTGNDFST+YAPLIRDGRMEKFYW P
Sbjct: 252 VVGTLMNLSDNPTRVSIGQDWRESDITNRVPIIVTGNDFSTIYAPLIRDGRMEKFYWQPN 311
Query: 210 REDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISGV-GVG 268
RED + + ++ D ++ D++V +V+ FP Q++DF+GALR+R YD + KW+ + G+
Sbjct: 312 REDIVNIVHRMYEKDGISRDEVVSIVNKFPNQALDFYGALRSRTYDRSISKWVDDIGGIE 371
Query: 269 SIGKSLVNSK--EAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYL 318
++GK L+ K E P F P TME LLE G+ +++EQ+ + +L+ +Y+
Sbjct: 372 NLGKQLLRRKKDEKLPEFTPPEQTMEALLESGHSLIREQQLIMETKLSKEYM 423
>gi|388505442|gb|AFK40787.1| unknown [Lotus japonicus]
Length = 187
Score = 335 bits (859), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 158/187 (84%), Positives = 173/187 (92%)
Query: 150 MVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPT 209
MVNATLMNIADNPT VQLPGMYNKE+NPRVPI+VTGND STLYAPLIRDGRMEKFYWAPT
Sbjct: 1 MVNATLMNIADNPTNVQLPGMYNKEDNPRVPIVVTGNDSSTLYAPLIRDGRMEKFYWAPT 60
Query: 210 REDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISGVGVGS 269
REDRIGVCKGIF+ DNV+++ +V +VDTFPGQSIDFFGALRARVYDDEVRKWISGVGV
Sbjct: 61 REDRIGVCKGIFQTDNVSEEAVVTIVDTFPGQSIDFFGALRARVYDDEVRKWISGVGVDL 120
Query: 270 IGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAALGEANED 329
IGK LVNSKE P FEQP+MT+EKLLEYGNM+VQEQENV+RVQLADKYL+EAALG AN+D
Sbjct: 121 IGKKLVNSKEGPPVFEQPKMTLEKLLEYGNMLVQEQENVERVQLADKYLNEAALGNANDD 180
Query: 330 AIQSGNF 336
AI+ G F
Sbjct: 181 AIKRGTF 187
>gi|449436220|ref|XP_004135891.1| PREDICTED: ribulose bisphosphate carboxylase/oxygenase activase,
chloroplastic-like [Cucumis sativus]
Length = 426
Score = 335 bits (858), Expect = 3e-89, Method: Compositional matrix adjust.
Identities = 164/313 (52%), Positives = 225/313 (71%), Gaps = 11/313 (3%)
Query: 13 YDYISQGLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFM-SLPNIKVPLILGIWGGKGQG 71
+DY + RT+ ++ YIAP FMDK+V H+ KNF+ L ++KVPLILG+WGGKGQG
Sbjct: 113 FDYRQKVTRTF--EHIQGDYYIAPTFMDKVVCHLVKNFIVHLLDVKVPLILGVWGGKGQG 170
Query: 72 KSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLMIND 130
KSFQ EL+F MG+ P++MSAGELES AGEP KLIR+RYR A+ +++ +GKM CLMIND
Sbjct: 171 KSFQTELIFQAMGVEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMIND 230
Query: 131 LDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEEN--PRVPIIVTGNDF 188
+DAG GR G TQ TVNNQ+V+ TLMN+ADNPT V + G +E + R+PII+TGNDF
Sbjct: 231 IDAGIGRFG-QTQVTVNNQIVSGTLMNLADNPTRVSI-GQDWREADILHRIPIILTGNDF 288
Query: 189 STLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGA 248
ST+YAPLIRDGRMEKFYW P RED + + ++ D ++ +V +V+TFP Q++DF+GA
Sbjct: 289 STIYAPLIRDGRMEKFYWQPNREDIVNIVHRMYEKDGISRAQVVDIVNTFPNQALDFYGA 348
Query: 249 LRARVYDDEVRKWISGV-GVGSIGKSLVNSK--EAAPTFEQPRMTMEKLLEYGNMIVQEQ 305
LR+R YD + KW+ + GV +G+ L+ + E PTF P T+E LL+ G +V+EQ
Sbjct: 349 LRSRTYDSAISKWVDDIGGVEKLGEKLLRRRKSEKLPTFTPPEQTLEALLKAGYSLVKEQ 408
Query: 306 ENVKRVQLADKYL 318
+ + +L+ +Y+
Sbjct: 409 QLIMETKLSKEYM 421
>gi|242077492|ref|XP_002448682.1| hypothetical protein SORBIDRAFT_06g031390 [Sorghum bicolor]
gi|241939865|gb|EES13010.1| hypothetical protein SORBIDRAFT_06g031390 [Sorghum bicolor]
Length = 433
Score = 334 bits (857), Expect = 3e-89, Method: Compositional matrix adjust.
Identities = 165/314 (52%), Positives = 223/314 (71%), Gaps = 12/314 (3%)
Query: 13 YDYISQGLRTYNLDNTIDG-LYIAPAFMDKLVVHITKNFMS--LPNIKVPLILGIWGGKG 69
+DY + RT+ + G YIAPAF+DK+ HI KN++ L NIK+PLILG+WGGKG
Sbjct: 120 FDYRQKATRTFEY---LQGDYYIAPAFLDKVACHIVKNYIGHLLNNIKIPLILGVWGGKG 176
Query: 70 QGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLMI 128
QGK+FQ EL+F MG+ P++MSAGELES AGEP +LIR RYR A+ +I+ +GK+ CLMI
Sbjct: 177 QGKTFQTELIFKAMGVEPVIMSAGELESEKAGEPGRLIRDRYRTASQVIQNQGKLSCLMI 236
Query: 129 NDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEE-NPRVPIIVTGND 187
NDLDAG GR G TQ TVNNQ+ TLMN+ADNP V + + + + RVPIIVTGND
Sbjct: 237 NDLDAGVGRFG-NTQMTVNNQIAVGTLMNLADNPNRVSIGQKWRESDVTHRVPIIVTGND 295
Query: 188 FSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFG 247
FSTLYAPLIRDGRMEKFYW PTRED I + G++R D ++ +++ ++VDTFP Q++DF+G
Sbjct: 296 FSTLYAPLIRDGRMEKFYWQPTREDIISIVHGMYRKDGLSAEEVARVVDTFPNQALDFYG 355
Query: 248 ALRARVYDDEVRKWISGV-GVGSIGKSLVNSK--EAAPTFEQPRMTMEKLLEYGNMIVQE 304
ALR+R YD + +W+ + G + L+ K E PTF P+ ++E L+E G +V+E
Sbjct: 356 ALRSRTYDRAILEWVEEIGGHEQLRAKLLKRKKGEELPTFIAPKPSLEALIESGYSLVKE 415
Query: 305 QENVKRVQLADKYL 318
QE + +L+ +Y+
Sbjct: 416 QELIMNSKLSKEYM 429
>gi|305855733|gb|ADM67707.1| putative rubisco activase [Rhododendron mariesii]
Length = 171
Score = 334 bits (857), Expect = 3e-89, Method: Compositional matrix adjust.
Identities = 157/170 (92%), Positives = 164/170 (96%)
Query: 8 AVMSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGG 67
A+MSSY+YIS GLR YN DN +DG YIAPAFMDKL+VHI+KNFM+LPNIKVPLILGIWGG
Sbjct: 2 AIMSSYEYISTGLRQYNFDNNMDGFYIAPAFMDKLIVHISKNFMTLPNIKVPLILGIWGG 61
Query: 68 KGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLM 127
KGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADII+KGKMCCL
Sbjct: 62 KGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIRKGKMCCLF 121
Query: 128 INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENP 177
INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENP
Sbjct: 122 INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENP 171
>gi|305855731|gb|ADM67706.1| putative rubisco activase [Rhododendron ellipticum]
gi|305855735|gb|ADM67708.1| putative rubisco activase [Rhododendron nakaharae]
gi|305855737|gb|ADM67709.1| putative rubisco activase [Rhododendron noriakianum]
gi|305855739|gb|ADM67710.1| putative rubisco activase [Rhododendron kanehirai]
gi|305855741|gb|ADM67711.1| putative rubisco activase [Rhododendron simsii]
gi|305855743|gb|ADM67712.1| putative rubisco activase [Rhododendron oldhamii]
gi|305855745|gb|ADM67713.1| putative rubisco activase [Rhododendron rubropilosum]
gi|338807888|gb|AEJ07668.1| putative rubisco activase [Rhododendron simsii]
gi|338807892|gb|AEJ07670.1| putative rubisco activase [Rhododendron seniavinii]
gi|338807896|gb|AEJ07672.1| putative rubisco activase [Rhododendron simsii]
gi|338807898|gb|AEJ07673.1| putative rubisco activase [Rhododendron scabrum]
Length = 171
Score = 333 bits (853), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 156/170 (91%), Positives = 164/170 (96%)
Query: 8 AVMSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGG 67
A+MSSY+YIS GLR YN DN +DG YIAPAFMDKL+VHI+KNFM+LPNIKVPLILGIWGG
Sbjct: 2 AIMSSYEYISTGLRQYNFDNNMDGFYIAPAFMDKLIVHISKNFMTLPNIKVPLILGIWGG 61
Query: 68 KGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLM 127
KGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADII+KGKMCCL
Sbjct: 62 KGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIRKGKMCCLF 121
Query: 128 INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENP 177
INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKE+NP
Sbjct: 122 INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEDNP 171
>gi|305855727|gb|ADM67704.1| putative rubisco activase [Pieris japonica var. taiwanensis]
Length = 171
Score = 332 bits (852), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 156/170 (91%), Positives = 164/170 (96%)
Query: 8 AVMSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGG 67
A+MSSY+YIS GLR YN DNT+DG YIAPAFMDKL+VHI+KNFM+LPNIKVPLILGIWGG
Sbjct: 2 AIMSSYEYISTGLRQYNFDNTVDGFYIAPAFMDKLIVHISKNFMTLPNIKVPLILGIWGG 61
Query: 68 KGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLM 127
KGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADII+KGKMCCL
Sbjct: 62 KGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIRKGKMCCLF 121
Query: 128 INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENP 177
INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPT VQLPGMYNKE+NP
Sbjct: 122 INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTSVQLPGMYNKEDNP 171
>gi|338807890|gb|AEJ07669.1| putative rubisco activase [Rhododendron chihsinianum]
Length = 171
Score = 332 bits (851), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 156/170 (91%), Positives = 164/170 (96%)
Query: 8 AVMSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGG 67
A+MSSY+YIS GLR YN DN +DG YIAPAFMDKL+VHI+KNFM+LPNIKVPLILGIWGG
Sbjct: 2 AIMSSYEYISTGLRQYNFDNNMDGFYIAPAFMDKLMVHISKNFMTLPNIKVPLILGIWGG 61
Query: 68 KGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLM 127
KGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADII+KGKMCCL
Sbjct: 62 KGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIRKGKMCCLF 121
Query: 128 INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENP 177
INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKE+NP
Sbjct: 122 INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEDNP 171
>gi|225443213|ref|XP_002270825.1| PREDICTED: ribulose bisphosphate carboxylase/oxygenase activase,
chloroplastic-like [Vitis vinifera]
Length = 442
Score = 330 bits (846), Expect = 6e-88, Method: Compositional matrix adjust.
Identities = 160/292 (54%), Positives = 214/292 (73%), Gaps = 7/292 (2%)
Query: 33 YIAPAFMDKLVVHITKNFMS-LPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMS 91
YIAP FMDK+V HI KN+++ L N VPLILGIWGGKGQGKSFQ EL+F MGI P++MS
Sbjct: 147 YIAPVFMDKVVCHIVKNYIAHLLNTNVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMS 206
Query: 92 AGELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLMINDLDAGAGRMGGTTQYTVNNQM 150
AGELES AGEP KLIR+RYR A+ +++ +GKM CLMIND+DAG GR G TQ TVNNQ+
Sbjct: 207 AGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGIGRFG-NTQVTVNNQI 265
Query: 151 VNATLMNIADNPTCVQLPGMYNKEE-NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPT 209
TLMN++DNPT V + + + + RVPIIVTGNDFST+YAPLIRDGRM+KFYW PT
Sbjct: 266 AVGTLMNLSDNPTRVSIGQDWRETDITNRVPIIVTGNDFSTIYAPLIRDGRMDKFYWQPT 325
Query: 210 REDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISGV-GVG 268
ED I + ++ D ++ D +V++VDTFP Q++DF+GALR+R YD + KW+ + GV
Sbjct: 326 HEDIINIVDRMYEKDGISRDAVVRIVDTFPNQALDFYGALRSRTYDRSISKWVDDIGGVE 385
Query: 269 SIGKSLVNSK--EAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYL 318
++G L+ + E P F P+ T++ LLE G +++EQ+ + +L+ +Y+
Sbjct: 386 NLGNKLLRRRKDEKLPVFVPPKQTIDALLESGYSLIKEQQLIMETKLSKEYM 437
>gi|305855747|gb|ADM67714.1| putative rubisco activase [Rhododendron breviperulatum]
Length = 171
Score = 330 bits (846), Expect = 8e-88, Method: Compositional matrix adjust.
Identities = 155/170 (91%), Positives = 163/170 (95%)
Query: 8 AVMSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGG 67
A+MSSY+YIS GLR YN DN +DG YIAPAFMDKL+VHI+KNFM+LPNIKVPLILGIWGG
Sbjct: 2 AIMSSYEYISTGLRQYNFDNNMDGFYIAPAFMDKLIVHISKNFMTLPNIKVPLILGIWGG 61
Query: 68 KGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLM 127
KGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADII+KGKMCCL
Sbjct: 62 KGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIRKGKMCCLF 121
Query: 128 INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENP 177
INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLP MYNKE+NP
Sbjct: 122 INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPCMYNKEDNP 171
>gi|305855755|gb|ADM67718.1| putative rubisco activase [Rhododendron rubropunctatum]
gi|305855757|gb|ADM67719.1| putative rubisco activase [Rhododendron morii]
gi|305855759|gb|ADM67720.1| putative rubisco activase [Rhododendron pseudochrysanthum]
Length = 171
Score = 330 bits (845), Expect = 9e-88, Method: Compositional matrix adjust.
Identities = 156/170 (91%), Positives = 163/170 (95%)
Query: 8 AVMSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGG 67
AVMSSY+YIS GLR YN DN +DG YIAPAFMDKL+VHI+KNFM+LPNIKVPLILGIWGG
Sbjct: 2 AVMSSYEYISTGLRQYNFDNNMDGFYIAPAFMDKLMVHISKNFMTLPNIKVPLILGIWGG 61
Query: 68 KGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLM 127
KGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADII+KGKMCCL
Sbjct: 62 KGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIRKGKMCCLF 121
Query: 128 INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENP 177
INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPT VQLPGMYNKE+NP
Sbjct: 122 INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTSVQLPGMYNKEDNP 171
>gi|338807894|gb|AEJ07671.1| putative rubisco activase [Rhododendron wiltonii]
Length = 171
Score = 329 bits (843), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 155/170 (91%), Positives = 163/170 (95%)
Query: 8 AVMSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGG 67
A+MSSY+YIS GLR YN DN +DG YIAPAFMDKL+VHI+KNFM+LPNIKVPLILGIWGG
Sbjct: 2 AIMSSYEYISTGLRQYNFDNNMDGFYIAPAFMDKLMVHISKNFMTLPNIKVPLILGIWGG 61
Query: 68 KGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLM 127
KGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADII+KGKMCCL
Sbjct: 62 KGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIRKGKMCCLF 121
Query: 128 INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENP 177
INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPT VQLPGMYNKE+NP
Sbjct: 122 INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTSVQLPGMYNKEDNP 171
>gi|297842049|ref|XP_002888906.1| hypothetical protein ARALYDRAFT_476441 [Arabidopsis lyrata subsp.
lyrata]
gi|297334747|gb|EFH65165.1| hypothetical protein ARALYDRAFT_476441 [Arabidopsis lyrata subsp.
lyrata]
Length = 419
Score = 328 bits (842), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 163/313 (52%), Positives = 223/313 (71%), Gaps = 11/313 (3%)
Query: 13 YDYISQGLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLP-NIKVPLILGIWGGKGQG 71
+DY + R++ ++ YIAP+F+DK+ VHI KN+++ NIK+PLILGIWGGKGQG
Sbjct: 106 FDYRQKATRSF--EHLQGDYYIAPSFLDKVAVHIVKNYLAPSLNIKIPLILGIWGGKGQG 163
Query: 72 KSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLMIND 130
K+FQ EL+F MG+ P++MSAGELES AGEP +LIR RYR A+ +I+ +GKM LMIND
Sbjct: 164 KTFQTELIFKTMGVEPVIMSAGELESDRAGEPGRLIRDRYRTASQVIQNQGKMSVLMIND 223
Query: 131 LDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEEN--PRVPIIVTGNDF 188
+DAG GR G TQ TVNNQ+V TLMN+ADNPT V + G +E + RVP+IVTGNDF
Sbjct: 224 IDAGLGRFG-ETQMTVNNQIVVGTLMNLADNPTRVSV-GQEWREADIVNRVPLIVTGNDF 281
Query: 189 STLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGA 248
STLYAPLIR+GRMEKFYW PTRED + + ++ D ++ D++ +VD FP Q++DF+GA
Sbjct: 282 STLYAPLIREGRMEKFYWQPTREDIVNIVSRMYEKDGISRKDVISIVDKFPNQALDFYGA 341
Query: 249 LRARVYDDEVRKWISGV-GVGSIGKSLVNSKEA--APTFEQPRMTMEKLLEYGNMIVQEQ 305
LR+R YD + KW+ G+ ++GK L+ SK+ P F P T+E LLE G ++ EQ
Sbjct: 342 LRSRTYDRSILKWVDEAGGMETLGKILLRSKKTKEVPQFTPPEQTVEALLESGYSLINEQ 401
Query: 306 ENVKRVQLADKYL 318
+ + +L+ +Y+
Sbjct: 402 KLIMETKLSKEYM 414
>gi|305855729|gb|ADM67705.1| putative rubisco activase [Rhododendron ovatum]
Length = 171
Score = 328 bits (842), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 154/170 (90%), Positives = 162/170 (95%)
Query: 8 AVMSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGG 67
A+MSSY+YIS GLR YN DN +DG YIAPAFMDKL+VHI+KNFM+LPNIKVPLILGIWGG
Sbjct: 2 AIMSSYEYISTGLRQYNFDNNMDGFYIAPAFMDKLMVHISKNFMTLPNIKVPLILGIWGG 61
Query: 68 KGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLM 127
KGQGKSFQCELVFAKMGINPIMMSAGELESG AGEPAKLIRQRYREAADII+KGKMCCL
Sbjct: 62 KGQGKSFQCELVFAKMGINPIMMSAGELESGKAGEPAKLIRQRYREAADIIRKGKMCCLF 121
Query: 128 INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENP 177
INDL+AGAGRMGGTTQYTVNNQMVNATLMNIA NPTCVQLPGMYNKEENP
Sbjct: 122 INDLEAGAGRMGGTTQYTVNNQMVNATLMNIAHNPTCVQLPGMYNKEENP 171
>gi|15219376|ref|NP_177454.1| putative Rubisco activase 2 [Arabidopsis thaliana]
gi|13605706|gb|AAK32846.1|AF361834_1 At1g73110/F3N23_39 [Arabidopsis thaliana]
gi|18700270|gb|AAL77745.1| At1g73110/F3N23_39 [Arabidopsis thaliana]
gi|26452888|dbj|BAC43522.1| unknown protein [Arabidopsis thaliana]
gi|332197294|gb|AEE35415.1| putative Rubisco activase 2 [Arabidopsis thaliana]
Length = 432
Score = 328 bits (841), Expect = 3e-87, Method: Compositional matrix adjust.
Identities = 160/312 (51%), Positives = 221/312 (70%), Gaps = 9/312 (2%)
Query: 13 YDYISQGLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLP-NIKVPLILGIWGGKGQG 71
+DY + R++ ++ YIAP+F+DK+ VHI KN+++ NIK+PLILGIWGGKGQG
Sbjct: 119 FDYRQKATRSF--EHLQGDYYIAPSFLDKVAVHIVKNYLAPSLNIKIPLILGIWGGKGQG 176
Query: 72 KSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLMIND 130
K+FQ EL+F MG+ P++MSAGELES AGEP +LIR RYR A+ +I+ +GKM LMIND
Sbjct: 177 KTFQTELIFKTMGVEPVIMSAGELESDRAGEPGRLIRDRYRTASQVIQNQGKMSVLMIND 236
Query: 131 LDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENP-RVPIIVTGNDFS 189
+DAG GR G TQ TVNNQ+V TLMN+ADNPT V + + + + RVP+IVTGNDFS
Sbjct: 237 IDAGLGRFG-ETQMTVNNQIVVGTLMNLADNPTRVSVGQEWREADMVNRVPLIVTGNDFS 295
Query: 190 TLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGAL 249
TLYAPLIR+GRMEKFYW PTRED + + ++ D ++ D++ +VD FP Q++DF+GAL
Sbjct: 296 TLYAPLIREGRMEKFYWQPTREDIVNIVSRMYEKDGISRKDVISIVDKFPNQALDFYGAL 355
Query: 250 RARVYDDEVRKWISGV-GVGSIGKSLVNSK--EAAPTFEQPRMTMEKLLEYGNMIVQEQE 306
R+R YD + KW+ G+ ++GK L+ K + P F P T+E LLE G ++ EQ+
Sbjct: 356 RSRTYDRSILKWVDEAGGMETLGKVLLRRKKTQEVPQFTAPEQTVEALLESGYSLINEQK 415
Query: 307 NVKRVQLADKYL 318
+ +L+ +Y+
Sbjct: 416 LIMETKLSKEYM 427
>gi|116310848|emb|CAH67790.1| OSIGBa0132E09-OSIGBa0108L24.4 [Oryza sativa Indica Group]
Length = 441
Score = 327 bits (839), Expect = 5e-87, Method: Compositional matrix adjust.
Identities = 164/313 (52%), Positives = 222/313 (70%), Gaps = 11/313 (3%)
Query: 13 YDYISQGLRTYNLDNTIDG-LYIAPAFMDKLVVHITKNFMS-LPNIKVPLILGIWGGKGQ 70
+DY + RT+ + G YIAP F+DK+ HI KN+++ + IK+PLILGIWGGKGQ
Sbjct: 128 FDYRQKATRTFEY---LQGDYYIAPLFLDKVACHIVKNYLAHILTIKIPLILGIWGGKGQ 184
Query: 71 GKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLMIN 129
GK+FQ EL+F MG+ P++MSAGELES AGEP +LIR RYR A+ +I+ +GKM LMIN
Sbjct: 185 GKTFQTELIFRAMGVEPVIMSAGELESEKAGEPGRLIRDRYRTASQVIQNQGKMSVLMIN 244
Query: 130 DLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEE-NPRVPIIVTGNDF 188
DLDAG GR G TQ TVNNQ+V TLMN+ADNPT V + + + + RVPIIVTGNDF
Sbjct: 245 DLDAGVGRFG-NTQMTVNNQIVIGTLMNLADNPTRVSIGQKWRESDVTHRVPIIVTGNDF 303
Query: 189 STLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGA 248
STLYAPLIRDGRMEKFYW P RED I + ++ D ++ +D+ K+VDTFP Q++DF+GA
Sbjct: 304 STLYAPLIRDGRMEKFYWQPDREDIINIVHRMYIKDGLSFEDVSKIVDTFPNQALDFYGA 363
Query: 249 LRARVYDDEVRKWISGV-GVGSIGKSLVNSK--EAAPTFEQPRMTMEKLLEYGNMIVQEQ 305
LR+R YD + +W+ + G + + L+ K E PTF P+ T++ L+E G+ +V+EQ
Sbjct: 364 LRSRTYDRAILQWVEEIGGHEQLNEKLLKRKKGEELPTFIPPKTTVDALIESGDSLVKEQ 423
Query: 306 ENVKRVQLADKYL 318
E + +L+ +Y+
Sbjct: 424 ELIMNSKLSKEYM 436
>gi|305855753|gb|ADM67717.1| putative rubisco activase [Rhododendron hyperythrum]
Length = 171
Score = 327 bits (838), Expect = 6e-87, Method: Compositional matrix adjust.
Identities = 155/169 (91%), Positives = 162/169 (95%)
Query: 8 AVMSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGG 67
AVMSSY+YIS GLR YN DN +DG YIAPAFMDKL+VHI+KNFM+LPNIKVPLILGIWGG
Sbjct: 2 AVMSSYEYISTGLRQYNFDNNMDGFYIAPAFMDKLMVHISKNFMTLPNIKVPLILGIWGG 61
Query: 68 KGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLM 127
KGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADII+KGKMCCL
Sbjct: 62 KGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIRKGKMCCLF 121
Query: 128 INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEEN 176
INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPT VQLPGMYNKE+N
Sbjct: 122 INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTSVQLPGMYNKEDN 170
>gi|115461056|ref|NP_001054128.1| Os04g0658300 [Oryza sativa Japonica Group]
gi|38346401|emb|CAE04234.2| OSJNBa0011F23.7 [Oryza sativa Japonica Group]
gi|113565699|dbj|BAF16042.1| Os04g0658300 [Oryza sativa Japonica Group]
Length = 441
Score = 327 bits (837), Expect = 8e-87, Method: Compositional matrix adjust.
Identities = 164/313 (52%), Positives = 222/313 (70%), Gaps = 11/313 (3%)
Query: 13 YDYISQGLRTYNLDNTIDG-LYIAPAFMDKLVVHITKNFMS-LPNIKVPLILGIWGGKGQ 70
+DY + RT+ + G YIAP F+DK+ HI KN+++ + IK+PLILGIWGGKGQ
Sbjct: 128 FDYRQKATRTFEY---LQGDYYIAPLFLDKVACHIVKNYLAHILTIKIPLILGIWGGKGQ 184
Query: 71 GKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLMIN 129
GK+FQ EL+F MG+ P++MSAGELES AGEP +LIR RYR A+ +I+ +GKM LMIN
Sbjct: 185 GKTFQTELIFRAMGVEPVIMSAGELESEKAGEPGRLIRDRYRTASQVIQNQGKMSVLMIN 244
Query: 130 DLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEE-NPRVPIIVTGNDF 188
DLDAG GR G TQ TVNNQ+V TLMN+ADNPT V + + + + RVPIIVTGNDF
Sbjct: 245 DLDAGVGRFG-NTQMTVNNQIVIGTLMNLADNPTRVSIGQKWRESDVTHRVPIIVTGNDF 303
Query: 189 STLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGA 248
STLYAPLIRDGRMEKFYW P RED I + ++ D ++ +D+ K+VDTFP Q++DF+GA
Sbjct: 304 STLYAPLIRDGRMEKFYWQPGREDIINIVHRMYIKDGLSFEDVSKVVDTFPNQALDFYGA 363
Query: 249 LRARVYDDEVRKWISGV-GVGSIGKSLVNSK--EAAPTFEQPRMTMEKLLEYGNMIVQEQ 305
LR+R YD + +W+ + G + + L+ K E PTF P+ T++ L+E G+ +V+EQ
Sbjct: 364 LRSRTYDRAILQWVEEIGGHEQLNEKLLKRKKGEELPTFIPPKTTVDALIESGDSLVKEQ 423
Query: 306 ENVKRVQLADKYL 318
E + +L+ +Y+
Sbjct: 424 ELIMNSKLSKEYM 436
>gi|305855751|gb|ADM67716.1| putative rubisco activase [Rhododendron formosanum]
Length = 171
Score = 326 bits (836), Expect = 9e-87, Method: Compositional matrix adjust.
Identities = 155/170 (91%), Positives = 162/170 (95%)
Query: 8 AVMSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGG 67
AVMSSY+YIS GLR YN DN +DG YIAPAFMDKL+VHI+KNFM+LPNIKVPLILGIWGG
Sbjct: 2 AVMSSYEYISTGLRQYNFDNNMDGFYIAPAFMDKLMVHISKNFMTLPNIKVPLILGIWGG 61
Query: 68 KGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLM 127
KGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADII+KGKMCCL
Sbjct: 62 KGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIRKGKMCCLF 121
Query: 128 INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENP 177
INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPT VQLPGM NKE+NP
Sbjct: 122 INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTSVQLPGMNNKEDNP 171
>gi|290760300|gb|ADD54590.1| putative ribulose-1,5-bisphosphate carboxylase/oxygenase activase 1
[Linum usitatissimum]
Length = 178
Score = 326 bits (835), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 154/166 (92%), Positives = 161/166 (96%)
Query: 4 GTHYAVMSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILG 63
GTHYAVMSSYDYIS+GLRTY+ DNT+ G YIAPAFMDKLVVHITKNF++LPNIKVPLILG
Sbjct: 13 GTHYAVMSSYDYISKGLRTYDFDNTMGGFYIAPAFMDKLVVHITKNFLNLPNIKVPLILG 72
Query: 64 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 123
+WGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREA+DIIKKGKM
Sbjct: 73 VWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREASDIIKKGKM 132
Query: 124 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPG 169
CCL INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPT VQLPG
Sbjct: 133 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPG 178
>gi|388517903|gb|AFK47013.1| unknown [Lotus japonicus]
Length = 421
Score = 326 bits (835), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 160/313 (51%), Positives = 223/313 (71%), Gaps = 11/313 (3%)
Query: 13 YDYISQGLRTYNLDNTIDGLY-IAPAFMDKLVVHITKNFMS-LPNIKVPLILGIWGGKGQ 70
+DY + R++ + G Y IAP FMDK+V HI KN+++ L N+KVPLILGIWGGKGQ
Sbjct: 108 FDYRQKATRSFQY---LQGYYYIAPLFMDKVVCHIAKNYLAHLLNVKVPLILGIWGGKGQ 164
Query: 71 GKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLMIN 129
GK+FQ EL+F MG+ P++MSAGELES AGEP +LIR+RYR A+ +++ +GKM CLMIN
Sbjct: 165 GKTFQTELIFHAMGMEPVIMSAGELESERAGEPGRLIRERYRTASQVVQNQGKMSCLMIN 224
Query: 130 DLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEE-NPRVPIIVTGNDF 188
D+DAG GR G TQ TVNNQ+V TLMN++DNPT V + + + + R+PIIVTGNDF
Sbjct: 225 DIDAGLGRFG-NTQMTVNNQIVVGTLMNLSDNPTRVSVGQDWRESDITNRIPIIVTGNDF 283
Query: 189 STLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGA 248
ST+YAPLIRDGRM+KFYW P RED + ++ D ++ D++ ++VDTFP Q++DF+GA
Sbjct: 284 STIYAPLIRDGRMDKFYWQPNREDIQNIVHRMYEKDGISRDEVERIVDTFPNQALDFYGA 343
Query: 249 LRARVYDDEVRKWISGV-GVGSIGKSLVNSK--EAAPTFEQPRMTMEKLLEYGNMIVQEQ 305
LR+R YD + KW+ + GV + G ++ + + P F P T++ LLE G +++EQ
Sbjct: 344 LRSRTYDKSILKWVDDIGGVENFGTKILKRRKDQNLPVFIPPEQTVDALLESGYSLIKEQ 403
Query: 306 ENVKRVQLADKYL 318
E V +L+ +Y+
Sbjct: 404 ELVMESKLSKEYM 416
>gi|449491096|ref|XP_004158798.1| PREDICTED: ribulose bisphosphate carboxylase/oxygenase activase,
chloroplastic-like [Cucumis sativus]
Length = 427
Score = 325 bits (834), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 163/314 (51%), Positives = 223/314 (71%), Gaps = 12/314 (3%)
Query: 13 YDYISQGLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFM-SLPNIKVPLILGIWGGKGQG 71
+DY + RT+ ++ YIAP FMDK+V H+ KNF+ L ++KVPLILG+WGGKGQG
Sbjct: 113 FDYRQKVTRTF--EHIQGDYYIAPTFMDKVVCHLVKNFIVHLLDVKVPLILGVWGGKGQG 170
Query: 72 KSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLMIND 130
KSFQ EL+F MG+ P++MSAGELES AGEP KLIR+RYR A+ +++ +GKM CLMIND
Sbjct: 171 KSFQTELIFQAMGVEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMIND 230
Query: 131 LDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEEN--PRVPIIVTGNDF 188
+DAG GR G TQ TVNNQ+V+ TLMN+ADNPT V + G +E + R+PII+TGNDF
Sbjct: 231 IDAGIGRF-GQTQVTVNNQIVSGTLMNLADNPTRVSI-GQDWREADILHRIPIILTGNDF 288
Query: 189 STLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQ-SIDFFG 247
ST+YAPLIRDGRMEKFYW P RED + + ++ D ++ +V +V+TFP Q + F+G
Sbjct: 289 STIYAPLIRDGRMEKFYWQPNREDIVNIVHRMYEKDGISRAQVVDIVNTFPNQGNFGFYG 348
Query: 248 ALRARVYDDEVRKWISGV-GVGSIGKSLVNSK--EAAPTFEQPRMTMEKLLEYGNMIVQE 304
ALR+R YD + KW+ + GV +G+ L+ + E PTF P T+E LL+ G +V+E
Sbjct: 349 ALRSRTYDSAISKWVDDIGGVEKLGEKLLRRRKSEKLPTFTPPEQTLEALLKAGYSLVKE 408
Query: 305 QENVKRVQLADKYL 318
Q+ + +L+ +Y+
Sbjct: 409 QQLIMETKLSKEYM 422
>gi|71834884|gb|AAZ41846.1| Rubisco activase 2 [Mesembryanthemum crystallinum]
Length = 456
Score = 325 bits (833), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 152/292 (52%), Positives = 213/292 (72%), Gaps = 7/292 (2%)
Query: 33 YIAPAFMDKLVVHITKNFMS-LPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMS 91
YIAP F+D++V HI KNFM+ L N+KVPLILGIWGGKGQGK+FQ EL+F MG+ P++MS
Sbjct: 161 YIAPVFLDQVVCHIVKNFMAHLLNVKVPLILGIWGGKGQGKTFQTELIFRAMGVEPVIMS 220
Query: 92 AGELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLMINDLDAGAGRMGGTTQYTVNNQM 150
AGE+ES AGEP +LIR+RYR A+ +++ GK+ CLMINDLDAG GR G TQ TVNNQ
Sbjct: 221 AGEMESEKAGEPGRLIRERYRAASQVVQNHGKLSCLMINDLDAGIGRFG-NTQVTVNNQT 279
Query: 151 VNATLMNIADNPTCVQLPGMYNKEENP-RVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPT 209
TLMN+ADNPT V + + + + R+P+IVTGNDFST+YAPLIRDGRM+KFYW PT
Sbjct: 280 AAGTLMNLADNPTRVSIGQKWRENDTTHRIPVIVTGNDFSTIYAPLIRDGRMDKFYWQPT 339
Query: 210 REDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISGV-GVG 268
+D + + ++ D ++ D++V +V+TFP Q++DF+GA+R+R YD V KW+ + G+
Sbjct: 340 HDDIVNIVHRMYEKDGISWDEVVSIVNTFPNQALDFYGAMRSRTYDRSVLKWVDDIGGID 399
Query: 269 SIGKSLVNSKEA--APTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYL 318
++G L+ ++ P F P +E LLE G +++EQ+ + + +LA +Y+
Sbjct: 400 NLGAKLLQLRKGDELPVFVPPEQNVEALLESGYSLLREQQLINKTKLAKEYM 451
>gi|356550687|ref|XP_003543716.1| PREDICTED: ribulose bisphosphate carboxylase/oxygenase activase,
chloroplastic-like [Glycine max]
Length = 428
Score = 324 bits (830), Expect = 5e-86, Method: Compositional matrix adjust.
Identities = 157/292 (53%), Positives = 215/292 (73%), Gaps = 7/292 (2%)
Query: 33 YIAPAFMDKLVVHITKNFMS-LPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMS 91
YIAP FMDK+V HI KN+++ + N KVPLILGIWGGKGQGKSFQ EL+F MGI P++MS
Sbjct: 133 YIAPLFMDKVVCHIVKNYLARVLNTKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMS 192
Query: 92 AGELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLMINDLDAGAGRMGGTTQYTVNNQM 150
AGELES AGEP KLIR+RYR A+ +++ +GKM CLMIND+DAG GR G TQ TVNNQ+
Sbjct: 193 AGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFG-NTQMTVNNQI 251
Query: 151 VNATLMNIADNPTCVQLPGMYNKEE-NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPT 209
V TLMN++DNPT V + + + + R+PIIVTGNDFSTLYAPLIRDGRM+KFYW P
Sbjct: 252 VVGTLMNLSDNPTRVSVGQDWRESDVTNRIPIIVTGNDFSTLYAPLIRDGRMDKFYWQPN 311
Query: 210 REDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISGV-GVG 268
+ED + + ++ D+++ D++ ++V+TFP Q++DF+GALR+R YD + KWI + GV
Sbjct: 312 QEDILNIVHRMYEKDSISRDEVERVVNTFPNQALDFYGALRSRTYDRSILKWIDDIGGVE 371
Query: 269 SIGKSLVNSK--EAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYL 318
+ G L+ + ++ P F P T++ LLE G +++EQ + +L+ +Y+
Sbjct: 372 NFGNKLLKRRKDQSLPVFIPPEQTVDALLESGYSLIKEQRLIMETKLSKEYM 423
>gi|305855749|gb|ADM67715.1| putative rubisco activase [Rhododendron kawakamii]
Length = 171
Score = 323 bits (829), Expect = 7e-86, Method: Compositional matrix adjust.
Identities = 152/170 (89%), Positives = 161/170 (94%)
Query: 8 AVMSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGG 67
AV+SSY +S GLR YN DN +DG YIAPAFMDKL+VHI+KNFM+LPNIKVPLILGIWGG
Sbjct: 2 AVLSSYQNLSTGLRQYNFDNNMDGFYIAPAFMDKLIVHISKNFMTLPNIKVPLILGIWGG 61
Query: 68 KGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLM 127
KGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADII+KGKMCCL
Sbjct: 62 KGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIRKGKMCCLF 121
Query: 128 INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENP 177
INDLDAGAGRMGGTTQ+TVNNQMVNATLMNIADNPTCVQLPG YNKE+NP
Sbjct: 122 INDLDAGAGRMGGTTQFTVNNQMVNATLMNIADNPTCVQLPGRYNKEDNP 171
>gi|388512327|gb|AFK44225.1| unknown [Medicago truncatula]
Length = 418
Score = 319 bits (818), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 156/292 (53%), Positives = 211/292 (72%), Gaps = 7/292 (2%)
Query: 33 YIAPAFMDKLVVHITKNFMS-LPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMS 91
YIAP FMDK+V HITKN++S L N KVPLILGIWGGKGQGK+FQ EL+F MG+ P++MS
Sbjct: 123 YIAPLFMDKVVTHITKNYLSHLLNAKVPLILGIWGGKGQGKTFQTELIFRAMGVEPVIMS 182
Query: 92 AGELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLMINDLDAGAGRMGGTTQYTVNNQM 150
AGELES NAGEP +LIR+RYR A+ +++ +GKM CLMIND+DAG GR G TQ TVNNQ+
Sbjct: 183 AGELESENAGEPGRLIRERYRTASKVVQNQGKMSCLMINDIDAGLGRFG-NTQMTVNNQI 241
Query: 151 VNATLMNIADNPTCVQLPGMYNKEE-NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPT 209
V TLMN+ DNPT V + + + + R+PIIVTGND ST+YAPLIRDGRM+KFYW P
Sbjct: 242 VVGTLMNLCDNPTRVSIGQDWREADVTNRIPIIVTGNDLSTIYAPLIRDGRMDKFYWQPN 301
Query: 210 REDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISGVGVGS 269
+ED + + + ++ D ++ D++ K+V TFP Q++DF+GALR+R YD + KW+ +G
Sbjct: 302 QEDILNIVQRMYEKDGISRDEVEKVVKTFPNQALDFYGALRSRTYDRSILKWVDDIGGAE 361
Query: 270 --IGKSLVNSKEA-APTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYL 318
K L K+ P F P T++ LLE G +++EQ+ + +L+ +Y+
Sbjct: 362 SFTSKFLKRRKDQNLPVFIPPEQTIDALLESGYSLLKEQQLIMETKLSKEYM 413
>gi|298204740|emb|CBI25238.3| unnamed protein product [Vitis vinifera]
Length = 440
Score = 319 bits (817), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 157/292 (53%), Positives = 211/292 (72%), Gaps = 9/292 (3%)
Query: 33 YIAPAFMDKLVVHITKNFMS-LPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMS 91
YIAP FM + HI KN+++ L N VPLILGIWGGKGQGKSFQ EL+F MGI P++MS
Sbjct: 147 YIAPVFM--AMCHIVKNYIAHLLNTNVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMS 204
Query: 92 AGELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLMINDLDAGAGRMGGTTQYTVNNQM 150
AGELES AGEP KLIR+RYR A+ +++ +GKM CLMIND+DAG GR G TQ TVNNQ+
Sbjct: 205 AGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGIGRFG-NTQVTVNNQI 263
Query: 151 VNATLMNIADNPTCVQLPGMYNKEE-NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPT 209
TLMN++DNPT V + + + + RVPIIVTGNDFST+YAPLIRDGRM+KFYW PT
Sbjct: 264 AVGTLMNLSDNPTRVSIGQDWRETDITNRVPIIVTGNDFSTIYAPLIRDGRMDKFYWQPT 323
Query: 210 REDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISGV-GVG 268
ED I + ++ D ++ D +V++VDTFP Q++DF+GALR+R YD + KW+ + GV
Sbjct: 324 HEDIINIVDRMYEKDGISRDAVVRIVDTFPNQALDFYGALRSRTYDRSISKWVDDIGGVE 383
Query: 269 SIGKSLVNSK--EAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYL 318
++G L+ + E P F P+ T++ LLE G +++EQ+ + +L+ +Y+
Sbjct: 384 NLGNKLLRRRKDEKLPVFVPPKQTIDALLESGYSLIKEQQLIMETKLSKEYM 435
>gi|357166474|ref|XP_003580722.1| PREDICTED: ribulose bisphosphate carboxylase/oxygenase activase,
chloroplastic-like [Brachypodium distachyon]
Length = 437
Score = 319 bits (817), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 156/292 (53%), Positives = 211/292 (72%), Gaps = 7/292 (2%)
Query: 33 YIAPAFMDKLVVHITKNFMSLP-NIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMS 91
YIAP+F+DK+ HI KN+++ NIKVPLILG+WGGKGQGK+FQ EL+F MG+ P++MS
Sbjct: 142 YIAPSFLDKVACHIVKNYLANNLNIKVPLILGVWGGKGQGKTFQTELIFKAMGVEPVIMS 201
Query: 92 AGELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLMINDLDAGAGRMGGTTQYTVNNQM 150
AGELES AGEP +LIR RYR A+ +I+ +GKM CLMINDLDAG GR G TQ TVNNQ+
Sbjct: 202 AGELESERAGEPGRLIRDRYRTASQVIQNQGKMSCLMINDLDAGVGRFG-NTQMTVNNQI 260
Query: 151 VNATLMNIADNPTCVQLPGMYNKEE-NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPT 209
V TLMN+ADNPT V + + + + RVPII TGNDFSTLYAPLIRDGRMEKFYW P
Sbjct: 261 VVGTLMNLADNPTRVSIGQKWRESDITHRVPIIATGNDFSTLYAPLIRDGRMEKFYWQPD 320
Query: 210 REDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISGVG--- 266
RED I + ++ D ++ +++ ++VDTFP Q++DF+GALR+R YD + +W++ +G
Sbjct: 321 REDIINIVHRMYMKDGLSFEEVSRIVDTFPNQALDFYGALRSRTYDQAILQWVNDIGGYE 380
Query: 267 VGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYL 318
+E PTF P+ T++ L+E G+ +V+EQE + +L+ +Y+
Sbjct: 381 QLGEKLLKKKKREKLPTFIPPKPTLDALIESGDSLVKEQELIMNSKLSKEYM 432
>gi|255543431|ref|XP_002512778.1| Ribulose bisphosphate carboxylase/oxygenase activase, chloroplast
precursor, putative [Ricinus communis]
gi|223547789|gb|EEF49281.1| Ribulose bisphosphate carboxylase/oxygenase activase, chloroplast
precursor, putative [Ricinus communis]
Length = 428
Score = 318 bits (814), Expect = 4e-84, Method: Compositional matrix adjust.
Identities = 155/292 (53%), Positives = 210/292 (71%), Gaps = 8/292 (2%)
Query: 33 YIAPAFMDKLVVHITKNFMS-LPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMS 91
YIAP F+ ++ HI KN+++ L N+KVPLILGIWGGKGQGKSFQ ELVF MGI P++MS
Sbjct: 134 YIAPVFL-VMICHIVKNYIAHLLNVKVPLILGIWGGKGQGKSFQTELVFQAMGIEPVIMS 192
Query: 92 AGELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLMINDLDAGAGRMGGTTQYTVNNQM 150
AGELES AGEP KLIR+RYR A+ +++ +GKM CLMIND+DAG GR G TQ TVNNQ+
Sbjct: 193 AGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFG-NTQMTVNNQI 251
Query: 151 VNATLMNIADNPTCVQLPGMYNKEE-NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPT 209
V TLMN+ DNPT V + + + R+PIIVTGNDFST+YAPLIRDGRMEKF+W P
Sbjct: 252 VVGTLMNLVDNPTRVSTGQDWRESDITNRIPIIVTGNDFSTIYAPLIRDGRMEKFFWQPN 311
Query: 210 REDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISGV-GVG 268
+ED + + ++ D ++ D++V +V TFP Q++DF+GALR+R YD + KWI + GV
Sbjct: 312 QEDIVNIVHRMYEKDGISRDEVVSIVKTFPNQALDFYGALRSRTYDMSISKWIDDIGGVE 371
Query: 269 SIGKSLVNSK--EAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYL 318
++G L+ + E P + P T+E L E G +++EQ+ + +L+ +Y+
Sbjct: 372 NLGNKLLKRRKNETLPVYTPPEQTVEALFESGYSLIREQQLIMETKLSKEYM 423
>gi|218195741|gb|EEC78168.1| hypothetical protein OsI_17750 [Oryza sativa Indica Group]
Length = 456
Score = 317 bits (813), Expect = 5e-84, Method: Compositional matrix adjust.
Identities = 164/328 (50%), Positives = 222/328 (67%), Gaps = 26/328 (7%)
Query: 13 YDYISQGLRTYNLDNTIDG-LYIAPAFMDKLVVHITKNFMS-LPNIKVPLILGIWGGKGQ 70
+DY + RT+ + G YIAP F+DK+ HI KN+++ + IK+PLILGIWGGKGQ
Sbjct: 128 FDYRQKATRTFEY---LQGDYYIAPLFLDKVACHIVKNYLAHILTIKIPLILGIWGGKGQ 184
Query: 71 GKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLMIN 129
GK+FQ EL+F MG+ P++MSAGELES AGEP +LIR RYR A+ +I+ +GKM LMIN
Sbjct: 185 GKTFQTELIFRAMGVEPVIMSAGELESEKAGEPGRLIRDRYRTASQVIQNQGKMSVLMIN 244
Query: 130 DLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEE-NPRVPIIVTGNDF 188
DLDAG GR G TQ TVNNQ+V TLMN+ADNPT V + + + + RVPIIVTGNDF
Sbjct: 245 DLDAGVGRFG-NTQMTVNNQIVIGTLMNLADNPTRVSIGQKWRESDVTHRVPIIVTGNDF 303
Query: 189 STLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGA 248
STLYAPLIRDGRMEKFYW P RED I + ++ D ++ +D+ K+VDTFP Q++DF+GA
Sbjct: 304 STLYAPLIRDGRMEKFYWQPDREDIINIVHRMYIKDGLSFEDVSKIVDTFPNQALDFYGA 363
Query: 249 LRARVYDDEVRK---------------WISGV-GVGSIGKSLVNSK--EAAPTFEQPRMT 290
LR+R YD + + W+ + G + + L+ K E PTF P+ T
Sbjct: 364 LRSRTYDRAILQLLKMYFFANTVEDVLWVEEIGGHEQLNEKLLKRKKGEELPTFIPPKTT 423
Query: 291 MEKLLEYGNMIVQEQENVKRVQLADKYL 318
++ L+E G+ +V+EQE + +L+ +Y+
Sbjct: 424 VDALIESGDSLVKEQELIMNSKLSKEYM 451
>gi|222629697|gb|EEE61829.1| hypothetical protein OsJ_16474 [Oryza sativa Japonica Group]
Length = 456
Score = 317 bits (811), Expect = 8e-84, Method: Compositional matrix adjust.
Identities = 164/328 (50%), Positives = 222/328 (67%), Gaps = 26/328 (7%)
Query: 13 YDYISQGLRTYNLDNTIDG-LYIAPAFMDKLVVHITKNFMS-LPNIKVPLILGIWGGKGQ 70
+DY + RT+ + G YIAP F+DK+ HI KN+++ + IK+PLILGIWGGKGQ
Sbjct: 128 FDYRQKATRTFEY---LQGDYYIAPLFLDKVACHIVKNYLAHILTIKIPLILGIWGGKGQ 184
Query: 71 GKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLMIN 129
GK+FQ EL+F MG+ P++MSAGELES AGEP +LIR RYR A+ +I+ +GKM LMIN
Sbjct: 185 GKTFQTELIFRAMGVEPVIMSAGELESEKAGEPGRLIRDRYRTASQVIQNQGKMSVLMIN 244
Query: 130 DLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEE-NPRVPIIVTGNDF 188
DLDAG GR G TQ TVNNQ+V TLMN+ADNPT V + + + + RVPIIVTGNDF
Sbjct: 245 DLDAGVGRFG-NTQMTVNNQIVIGTLMNLADNPTRVSIGQKWRESDVTHRVPIIVTGNDF 303
Query: 189 STLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGA 248
STLYAPLIRDGRMEKFYW P RED I + ++ D ++ +D+ K+VDTFP Q++DF+GA
Sbjct: 304 STLYAPLIRDGRMEKFYWQPGREDIINIVHRMYIKDGLSFEDVSKVVDTFPNQALDFYGA 363
Query: 249 LRARVYDDEVRK---------------WISGV-GVGSIGKSLVNSK--EAAPTFEQPRMT 290
LR+R YD + + W+ + G + + L+ K E PTF P+ T
Sbjct: 364 LRSRTYDRAILQLLKMYFFANTVEDVLWVEEIGGHEQLNEKLLKRKKGEELPTFIPPKTT 423
Query: 291 MEKLLEYGNMIVQEQENVKRVQLADKYL 318
++ L+E G+ +V+EQE + +L+ +Y+
Sbjct: 424 VDALIESGDSLVKEQELIMNSKLSKEYM 451
>gi|168063726|ref|XP_001783820.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162664649|gb|EDQ51360.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 458
Score = 316 bits (810), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 160/306 (52%), Positives = 216/306 (70%), Gaps = 8/306 (2%)
Query: 22 TYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLP-NIKVPLILGIWGGKGQGKSFQCELVF 80
T + ++ YIAPAFMDK+V HI KN+++ + KVPLILG+WGGKGQGKSFQ EL+F
Sbjct: 141 TRSFEHITGDYYIAPAFMDKVVTHIVKNYLAAQIDGKVPLILGVWGGKGQGKSFQTELIF 200
Query: 81 AKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLMINDLDAGAGRMG 139
MGI PI+MSAGE+ES AGEP KLIR+RYR A +I +GKM CLMINDLDAG GR
Sbjct: 201 KAMGIEPIIMSAGEMESEWAGEPGKLIRERYRAAHLVINNQGKMSCLMINDLDAGIGRFE 260
Query: 140 GTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEE-NPRVPIIVTGNDFSTLYAPLIRD 198
TQ TVNNQMV TLMN+ADNP V + + + + RVPIIVTGNDFST++APLIRD
Sbjct: 261 -NTQMTVNNQMVVGTLMNLADNPNRVSVGQAWREADIVNRVPIIVTGNDFSTIWAPLIRD 319
Query: 199 GRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEV 258
GRM+KFYW PTR+D + + +++ D +++ DI ++DTFP Q++DF+GALR+R YD V
Sbjct: 320 GRMDKFYWQPTRDDLVKIVYQMYKKDGLSEADIGFIIDTFPNQALDFYGALRSRTYDKHV 379
Query: 259 RKWISGV-GVGSIGKSLVNSKEA---APTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLA 314
+W++ + G IG L+ K+ P F P ++ L++ G +V+EQ V ++L+
Sbjct: 380 LEWVNEIGGAEQIGPKLLRRKKGDAPLPEFIAPEQNVDDLIKAGYELVEEQNMVNNMKLS 439
Query: 315 DKYLSE 320
D+Y+ +
Sbjct: 440 DEYMKK 445
>gi|159885646|dbj|BAF93200.1| RuBisCO activase [Hordeum vulgare]
Length = 158
Score = 310 bits (794), Expect = 7e-82, Method: Compositional matrix adjust.
Identities = 146/158 (92%), Positives = 153/158 (96%)
Query: 76 CELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGA 135
CELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAD+IKKGKMCCL INDLDAGA
Sbjct: 1 CELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADMIKKGKMCCLFINDLDAGA 60
Query: 136 GRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPL 195
GRMGGTTQYTVNNQMVNATLMNIAD PT VQLPGMYNKEENPRVPI+VTGNDFSTLYAPL
Sbjct: 61 GRMGGTTQYTVNNQMVNATLMNIADAPTNVQLPGMYNKEENPRVPIVVTGNDFSTLYAPL 120
Query: 196 IRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVK 233
IRDGRMEKFYWAPTR+DRIGVCKGIF+ DNV+D+ +VK
Sbjct: 121 IRDGRMEKFYWAPTRDDRIGVCKGIFQTDNVSDESVVK 158
>gi|307108081|gb|EFN56322.1| hypothetical protein CHLNCDRAFT_144763 [Chlorella variabilis]
Length = 434
Score = 309 bits (792), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 160/318 (50%), Positives = 215/318 (67%), Gaps = 20/318 (6%)
Query: 20 LRTYNLDNTIDGLYIAPAFMDKLVVHITKNFM----SLPN-IKVPLILGIWGGKGQGKSF 74
RTYN N + YIAP F++K+ +HI KNF+ +L + +VPLILGIWGGKGQGK+F
Sbjct: 107 FRTYN--NIVGDYYIAPRFLEKIALHIAKNFLLEFGALDSATRVPLILGIWGGKGQGKTF 164
Query: 75 QCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLMINDLDA 133
Q EL F K+G+ PI+MSAGELE+ AG P KLIR+RYR AA++ K GK+ CLMINDLDA
Sbjct: 165 QTELCFKKLGVEPIIMSAGELENEWAGVPGKLIRERYRRAAEVSKVHGKLSCLMINDLDA 224
Query: 134 GAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQL-PGMYNKEENPRVPIIVTGNDFSTLY 192
G G TQ TVNNQMV TLMNI DNPT + + G + R+PIIVTGNDFST++
Sbjct: 225 GIGHFE-NTQITVNNQMVVGTLMNICDNPTRISIGQGWMENDVTRRIPIIVTGNDFSTIF 283
Query: 193 APLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRAR 252
APL+RDGRM+KFYW PT ED +G+ ++++D +++ D+ L+ FPGQ++DFFGALR+
Sbjct: 284 APLVRDGRMDKFYWQPTEEDLVGILHQMYKDDGLSESDMAALLRAFPGQTLDFFGALRSS 343
Query: 253 VYDDEVRKWI-SGVGVGSIGKSLVNSKEAA---------PTFEQPRMTMEKLLEYGNMIV 302
YD ++R+WI V G I + N +E P FE +T+ L+E G +
Sbjct: 344 TYDGQIRQWIKQDVIHGEIAEDNQNMRELGRRLLRQEDLPQFEPVDLTLLMLMEEGRRLQ 403
Query: 303 QEQENVKRVQLADKYLSE 320
EQ+ V ++L+D+YL +
Sbjct: 404 AEQDMVNSMRLSDEYLKK 421
>gi|117661805|gb|ABK55669.1| chloroplast rubisco activase [Cucumis sativus]
Length = 150
Score = 305 bits (781), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 144/150 (96%), Positives = 148/150 (98%)
Query: 62 LGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKG 121
LG+WGGKGQG+SFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKG
Sbjct: 1 LGVWGGKGQGRSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKG 60
Query: 122 KMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPI 181
KMCCL INDLDAGAGR+GGTTQYTVNNQMVNATLMNIADNPT VQLPGMYNKEENPRVPI
Sbjct: 61 KMCCLFINDLDAGAGRLGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRVPI 120
Query: 182 IVTGNDFSTLYAPLIRDGRMEKFYWAPTRE 211
IVTGNDFSTLYAPLIRDGRM+KFYWAPTRE
Sbjct: 121 IVTGNDFSTLYAPLIRDGRMDKFYWAPTRE 150
>gi|384253471|gb|EIE26946.1| hypothetical protein COCSUDRAFT_11792, partial [Coccomyxa
subellipsoidea C-169]
Length = 404
Score = 303 bits (777), Expect = 7e-80, Method: Compositional matrix adjust.
Identities = 153/330 (46%), Positives = 217/330 (65%), Gaps = 24/330 (7%)
Query: 18 QGLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSL-----PNIKVPLILGIWGGKGQGK 72
+G + N + Y++P F+D + +HI KN+M P+ +VPLILGIWG KGQGK
Sbjct: 67 RGWEFRSFANIVGDYYVSPRFLDAVAMHIVKNWMVDNGAFDPSHRVPLILGIWGPKGQGK 126
Query: 73 SFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLMINDL 131
+FQ EL F K+GI P++MSAGELES AG P +LIR RYR AA++ K +G++ CLMINDL
Sbjct: 127 TFQTELTFKKLGIEPVVMSAGELESEWAGAPGRLIRDRYRRAAEVAKVRGRLPCLMINDL 186
Query: 132 DAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEE-NPRVPIIVTGNDFST 190
DAG G + Q TVNNQMV+ TLMN+ DNP V + ++ + RVPIIVTGNDFST
Sbjct: 187 DAGVG-IQENVQRTVNNQMVSGTLMNLCDNPNRVSVFQVWRDSDLVQRVPIIVTGNDFST 245
Query: 191 LYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALR 250
L+APL+RDGRM KFYW P R D + + +++ D ++ +D L+DTFPGQS+DFFGALR
Sbjct: 246 LFAPLVRDGRMAKFYWEPDRIDLLNILHQMYKEDGLSVEDTQTLLDTFPGQSLDFFGALR 305
Query: 251 ARVYDDEVRKWI-----------SGVGVGSIGKSLVNS-----KEAAPTFEQPRMTMEKL 294
A YD+++R+WI + + K L++ ++ P+FE + +E L
Sbjct: 306 AATYDNQIRRWIKEEVVKADITDEDANMRELSKRLIDHMHVVRRKDLPSFEPVDLKLEDL 365
Query: 295 LEYGNMIVQEQENVKRVQLADKYLSEAALG 324
L+ G+ + +EQENV R++L+++Y+ + G
Sbjct: 366 LKEGHRLAEEQENVNRLKLSEEYMKNSGGG 395
>gi|358346465|ref|XP_003637288.1| Ribulose bisphosphate carboxylase/oxygenase activase [Medicago
truncatula]
gi|355503223|gb|AES84426.1| Ribulose bisphosphate carboxylase/oxygenase activase [Medicago
truncatula]
Length = 459
Score = 300 bits (768), Expect = 8e-79, Method: Compositional matrix adjust.
Identities = 154/333 (46%), Positives = 211/333 (63%), Gaps = 48/333 (14%)
Query: 33 YIAPAFMDKLVVHITKNFMS-LPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMS 91
YIAP FMDK+V HITKN++S L N KVPLILGIWGGKGQGK+FQ EL+F MG+ P++MS
Sbjct: 123 YIAPLFMDKVVTHITKNYLSHLLNAKVPLILGIWGGKGQGKTFQTELIFRAMGVEPVIMS 182
Query: 92 AGELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLMINDLDAGAGRMGGTTQYTVNNQM 150
AGELES NAGEP +LIR+RYR A+ +++ +GKM CLMIND+DAG GR G T Q TVNNQ+
Sbjct: 183 AGELESENAGEPGRLIRERYRTASKVVQNQGKMSCLMINDIDAGLGRFGNT-QMTVNNQI 241
Query: 151 VNATLMNIADNPTCVQLPGMYNKEE-NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPT 209
V TLMN+ DNPT V + + + + R+PIIVTGND ST+YAPLIRDGRM+KFYW P
Sbjct: 242 VVGTLMNLCDNPTRVSIGQDWREADVTNRIPIIVTGNDLSTIYAPLIRDGRMDKFYWQPN 301
Query: 210 REDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRK--------- 260
+ED + + + ++ D ++ D++ K+V TFP Q++DF+GALR+R YD + K
Sbjct: 302 QEDILNIVQRMYEKDGISRDEVEKVVKTFPNQALDFYGALRSRTYDRSILKGVELEEKPL 361
Query: 261 --------------------------------WISGV-GVGSIGKSLVNSK--EAAPTFE 285
W+ + G S + + + P F
Sbjct: 362 SKESPVSYLLCTSNAVGITHTDRLIPQHLPTPWVDDIGGAESFASKFLKRRKDQNLPVFI 421
Query: 286 QPRMTMEKLLEYGNMIVQEQENVKRVQLADKYL 318
P T++ LLE G +++EQ+ + +L+ +Y+
Sbjct: 422 PPEQTIDALLESGYSLLKEQQLIMETKLSKEYM 454
>gi|302769017|ref|XP_002967928.1| hypothetical protein SELMODRAFT_88296 [Selaginella moellendorffii]
gi|300164666|gb|EFJ31275.1| hypothetical protein SELMODRAFT_88296 [Selaginella moellendorffii]
Length = 421
Score = 299 bits (766), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 149/292 (51%), Positives = 208/292 (71%), Gaps = 7/292 (2%)
Query: 33 YIAPAFMDKLVVHITKNFMSLP-NIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMS 91
YIAPAF+ ++ HI KN+++ + VPLILG+WGGKGQGK+FQ EL+F MG+ P++MS
Sbjct: 122 YIAPAFL--VLTHIVKNYVAEQLDTSVPLILGVWGGKGQGKTFQTELIFKAMGVEPVIMS 179
Query: 92 AGELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLMINDLDAGAGRMGGTTQYTVNNQM 150
AGE+ES AGEP +LIR RYR AA ++K +GK+ CLMIND+DAG GR TQ TVNNQ+
Sbjct: 180 AGEMESERAGEPGRLIRDRYRTAAQVVKNQGKLSCLMINDIDAGIGRFE-NTQMTVNNQI 238
Query: 151 VNATLMNIADNPTCVQLPGMYNKEEN-PRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPT 209
V TLMN+ADNPT V + + + + RVPIIVTGNDFSTL+APLIRDGRM+KFYW P+
Sbjct: 239 VVGTLMNLADNPTQVSVGQDWREGDVIKRVPIIVTGNDFSTLWAPLIRDGRMDKFYWQPS 298
Query: 210 REDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWI-SGVGVG 268
RED I + ++ D ++ D+ +VD FP Q++DF+GAL++R D+E+ KW+ S G
Sbjct: 299 REDLINIVYRMYSKDGLSRVDVETIVDKFPNQALDFYGALKSRACDEELWKWLESNGGPE 358
Query: 269 SIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSE 320
+ + SK+ F P T+ LL+ G +V+EQ+ V +++L+D+Y+ +
Sbjct: 359 KLNEIFRQSKKKTIDFNPPEQTLTSLLKAGTSLVEEQKMVTKMRLSDEYMKK 410
>gi|302761150|ref|XP_002963997.1| hypothetical protein SELMODRAFT_82367 [Selaginella moellendorffii]
gi|300167726|gb|EFJ34330.1| hypothetical protein SELMODRAFT_82367 [Selaginella moellendorffii]
Length = 421
Score = 299 bits (765), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 149/292 (51%), Positives = 208/292 (71%), Gaps = 7/292 (2%)
Query: 33 YIAPAFMDKLVVHITKNFMSLP-NIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMS 91
YIAPAF+ ++ HI KN+++ + VPLILG+WGGKGQGK+FQ EL+F MG+ P++MS
Sbjct: 122 YIAPAFL--VLTHIVKNYVAEQLDTSVPLILGVWGGKGQGKTFQTELIFKAMGVEPVIMS 179
Query: 92 AGELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLMINDLDAGAGRMGGTTQYTVNNQM 150
AGE+ES AGEP +LIR RYR AA ++K +GK+ CLMIND+DAG GR TQ TVNNQ+
Sbjct: 180 AGEMESERAGEPGRLIRDRYRTAAQVVKNQGKLSCLMINDIDAGIGRFE-NTQMTVNNQI 238
Query: 151 VNATLMNIADNPTCVQLPGMYNKEEN-PRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPT 209
V TLMN+ADNPT V + + + + RVPIIVTGNDFSTL+APLIRDGRM+KFYW P+
Sbjct: 239 VVGTLMNLADNPTQVSVGQDWREGDVIKRVPIIVTGNDFSTLWAPLIRDGRMDKFYWQPS 298
Query: 210 REDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWI-SGVGVG 268
RED I + ++ D ++ D+ +VD FP Q++DF+GAL++R D+E+ KW+ S G
Sbjct: 299 REDLINIVYRMYSKDGLSRVDVETIVDKFPNQALDFYGALKSRACDEELWKWLESNGGPE 358
Query: 269 SIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSE 320
+ + SK+ F P T+ LL+ G +V+EQ+ V +++L+D+Y+ +
Sbjct: 359 KLNEIFRQSKKKTIDFNPPEQTLTSLLKAGTSLVEEQKMVTKMRLSDEYMKK 410
>gi|282898324|ref|ZP_06306315.1| AAA ATPase, central region protein [Raphidiopsis brookii D9]
gi|281196855|gb|EFA71760.1| AAA ATPase, central region protein [Raphidiopsis brookii D9]
Length = 362
Score = 291 bits (744), Expect = 4e-76, Method: Compositional matrix adjust.
Identities = 137/236 (58%), Positives = 179/236 (75%), Gaps = 1/236 (0%)
Query: 83 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLMINDLDAGAGRMGGT 141
MG+ ++S GELES +AG+PA+LIR RYRE A+++K +GKMC LMINDLDAGAGR
Sbjct: 1 MGVGVTLISGGELESPDAGDPARLIRLRYRETAELVKVRGKMCVLMINDLDAGAGRFDEG 60
Query: 142 TQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRM 201
TQYTVN Q+VNATLMNIAD+PT VQLPG Y+ + RVPIIVTGNDFSTLYAPLIRDGRM
Sbjct: 61 TQYTVNTQLVNATLMNIADSPTDVQLPGSYDAKPIRRVPIIVTGNDFSTLYAPLIRDGRM 120
Query: 202 EKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKW 261
EKFYW P +D++G+ GIF D ++ +I +LV+TFP QSIDFF ALR+R+YD+++R +
Sbjct: 121 EKFYWEPNHDDKVGIVGGIFAEDGLSPVEIEQLVNTFPHQSIDFFSALRSRIYDEQIRDF 180
Query: 262 ISGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKY 317
I +G + +VNS E P F++P T+ L+E GN++V EQ++V+ L +Y
Sbjct: 181 IHEIGYDRVSMRVVNSMEPPPQFQKPEFTLFHLIEAGNVMVGEQKHVESSHLVAEY 236
>gi|19387266|gb|AAL87177.1|AF480497_5 putative rubisco activase [Oryza sativa Japonica Group]
Length = 435
Score = 286 bits (731), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 154/327 (47%), Positives = 207/327 (63%), Gaps = 45/327 (13%)
Query: 13 YDYISQGLRTYNLDNTIDG-LYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQG 71
+DY + RT+ + G YIAP F+DK+ GIWGGKGQG
Sbjct: 128 FDYRQKATRTFEY---LQGDYYIAPLFLDKV--------------------GIWGGKGQG 164
Query: 72 KSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLMIND 130
K+FQ EL+F MG+ P++MSAGELES AGEP +LIR RYR A+ +I+ +GKM LMIND
Sbjct: 165 KTFQTELIFRAMGVEPVIMSAGELESEKAGEPGRLIRDRYRTASQVIQNQGKMSVLMIND 224
Query: 131 LDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEE-NPRVPIIVTGNDFS 189
LDAG GR G TQ TVNNQ+V TLMN+ADNPT V + + + + RVPIIVTGNDFS
Sbjct: 225 LDAGVGRFG-NTQMTVNNQIVIGTLMNLADNPTRVSIGQKWRESDVTHRVPIIVTGNDFS 283
Query: 190 TLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGAL 249
TLYAPLIRDGRMEKFYW P RED I + ++ D ++ +D+ K+VDTFP Q++DF+GAL
Sbjct: 284 TLYAPLIRDGRMEKFYWQPGREDIINIVHRMYIKDGLSFEDVSKVVDTFPNQALDFYGAL 343
Query: 250 RARVYDDEVRK---------------WISGV-GVGSIGKSLVNSK--EAAPTFEQPRMTM 291
R+R YD + + W+ + G + + L+ K E PTF P+ T+
Sbjct: 344 RSRTYDRAILQLLKMYFFANTVEDVLWVEEIGGHEQLNEKLLKRKKGEELPTFIPPKTTV 403
Query: 292 EKLLEYGNMIVQEQENVKRVQLADKYL 318
+ L+E G+ +V+EQE + +L+ +Y+
Sbjct: 404 DALIESGDSLVKEQELIMNSKLSKEYM 430
>gi|37522136|ref|NP_925513.1| ribulose-bisphosphate carboxylase activase, partial [Gloeobacter
violaceus PCC 7421]
gi|35213136|dbj|BAC90508.1| ribulose-bisphosphate carboxylase activase [Gloeobacter violaceus
PCC 7421]
Length = 294
Score = 280 bits (717), Expect = 6e-73, Method: Compositional matrix adjust.
Identities = 131/282 (46%), Positives = 192/282 (68%), Gaps = 3/282 (1%)
Query: 31 GLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMM 90
G +I F D++++HI KN+ +LP ++ PLILGI G KG+GKSF + V ++ N I++
Sbjct: 3 GYFIPDRFRDRIILHIAKNYAALPKVQTPLILGIHGPKGEGKSFMVDRVLQELQANVIVI 62
Query: 91 SAGELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLMINDLDAGAGRMGGTTQYTVNNQ 149
S+ ELES +AGEP +LIR RYREAA+++K +G++ ++I+D+DAGAG TTQYTVN Q
Sbjct: 63 SSSELESPDAGEPGRLIRLRYREAAELVKVRGRVAAIVIHDIDAGAGFWSATTQYTVNTQ 122
Query: 150 MVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPT 209
+VNA LM IADNPT VQLPG Y+ PR+P +VTGNDFS LYAPL+RDGRM KF W PT
Sbjct: 123 LVNAALMAIADNPTNVQLPGSYDPTPLPRIPFVVTGNDFSKLYAPLVRDGRMSKFSWEPT 182
Query: 210 REDRIGVCKGIFRNDNVA--DDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISGVGV 267
++ + +F D A D+ +L+ F Q +DFF A+R+R YDD + + + G+
Sbjct: 183 FAEKSEIVAHLFAEDGAALGRYDLERLIQRFGAQPVDFFAAIRSRAYDDMLLQQVKAWGL 242
Query: 268 GSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVK 309
++ ++LVN P FE R+ +++ L +G I+ +Q+ ++
Sbjct: 243 ENVSRNLVNHGGQPPRFEAVRLDLDRCLRWGEQIMSDQQAIE 284
>gi|125535371|gb|EAY81919.1| hypothetical protein OsI_37097 [Oryza sativa Indica Group]
Length = 360
Score = 271 bits (694), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 167/330 (50%), Positives = 185/330 (56%), Gaps = 88/330 (26%)
Query: 45 HITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPA 104
HI+KN M LPNI QGKSFQCELVFAKMGIN IMMSAGELESGNAGEPA
Sbjct: 117 HISKNLMKLPNI-------------QGKSFQCELVFAKMGINLIMMSAGELESGNAGEPA 163
Query: 105 KLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTC 164
KLIRQRYREAAD+I KGKMC L INDLDAG V+ + + AD
Sbjct: 164 KLIRQRYREAADMINKGKMCLLFINDLDAG-------RHDAVHGEQPDGE--RDAD---- 210
Query: 165 VQLPGMYNKEENPR-VPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRN 223
+ G ++ PR V + PLIRDGRM+KFYWAPTREDRIGVC+GIFR+
Sbjct: 211 -EHRGQPHQRAAPRDVQPPCPHHRHRQRLLPLIRDGRMDKFYWAPTREDRIGVCRGIFRS 269
Query: 224 DNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISGVGVGSIGKSLVNSKEAAPT 283
D K+ D FP S G G+
Sbjct: 270 D--------KVPDAFPSTS------------------------SGRCGR----------- 286
Query: 284 FEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAALGEANEDAIQSGNFYGKAAQQ 343
G +EQENVKRV+LADKYLSEAALG+AN D SG FYGKAAQQ
Sbjct: 287 --------------GCTATREQENVKRVRLADKYLSEAALGDANHD---SGEFYGKAAQQ 329
Query: 344 MNVPVPEGCTDPTAENFDPTARSDDGSCQY 373
VPVP GCTD A N+DPTARSDDGSC Y
Sbjct: 330 SPVPVPAGCTDQRAANYDPTARSDDGSCVY 359
>gi|159491655|ref|XP_001703775.1| RuBisCO activase-like protein [Chlamydomonas reinhardtii]
gi|158270456|gb|EDO96301.1| RuBisCO activase-like protein [Chlamydomonas reinhardtii]
Length = 533
Score = 268 bits (685), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 137/320 (42%), Positives = 198/320 (61%), Gaps = 22/320 (6%)
Query: 20 LRTYNLDNTIDGLYIAPAFMDKLVVHITKNFM-----SLPNIKVPLILGIWGGKGQGKSF 74
R +N N + Y+APAF+ K+ +H+ KN++ N +VPLILGIWG KG GK+F
Sbjct: 154 FRVFN--NIVGDYYVAPAFLMKVAMHMAKNYLFDLGAMSANTRVPLILGIWGEKGMGKTF 211
Query: 75 QCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLMINDLDA 133
Q EL K+G ++MS+GELE AG P KLIR+RYR+A+++ K +GKM L+I+D+DA
Sbjct: 212 QTELALKKLGAETVVMSSGELEHEWAGTPGKLIRERYRKASEMSKVRGKMTALLIHDIDA 271
Query: 134 GAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQL-PGMYNKEENPRVPIIVTGNDFSTLY 192
G G Q TVNNQ+V TLMNI DNP V + R PIIVTGNDFS ++
Sbjct: 272 GLGHFD-HVQVTVNNQIVIGTLMNICDNPNVVSTGQDWFAVSRIRRTPIIVTGNDFSKMF 330
Query: 193 APLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRAR 252
APLIRDGRM+K+YW PTRED + + ++++D + D+ L+D F Q +DF+GALRA
Sbjct: 331 APLIRDGRMDKYYWKPTREDMVNIVLQMYQDDGITRRDVEALLDRFRHQPLDFYGALRAS 390
Query: 253 VYDDEVRKWIS-----------GVGVGSIGKSLVN-SKEAAPTFEQPRMTMEKLLEYGNM 300
YD+++R WI + ++ K+L++ + P FE R+T++ L+ G
Sbjct: 391 TYDEQIRDWIKTDVTGEEFIADAANLSNMAKTLLSVDRSEMPKFEPVRLTLDMLVAEGER 450
Query: 301 IVQEQENVKRVQLADKYLSE 320
+ EQ+ V +L+++YL
Sbjct: 451 LEMEQQQVNDHKLSEQYLKH 470
>gi|169635155|gb|ACA58354.1| rubisco activase 2 [Arachis diogoi]
Length = 160
Score = 263 bits (673), Expect = 8e-68, Method: Compositional matrix adjust.
Identities = 131/159 (82%), Positives = 144/159 (90%)
Query: 217 CKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISGVGVGSIGKSLVN 276
C GIFR DNV +DIVKLVDTFPGQSIDFFGALRARVYDDEVRKW+SGVGV +GK LVN
Sbjct: 2 CTGIFRTDNVPPEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWVSGVGVDGVGKKLVN 61
Query: 277 SKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAALGEANEDAIQSGNF 336
SKE PTFEQP+MT+ KLLEYGNM+VQEQENVKRVQLADKYL+EAALG+AN+DAI+SG+F
Sbjct: 62 SKEGPPTFEQPKMTLAKLLEYGNMLVQEQENVKRVQLADKYLNEAALGDANQDAIKSGSF 121
Query: 337 YGKAAQQMNVPVPEGCTDPTAENFDPTARSDDGSCQYTL 375
YGKAAQQ+ VPVPEGCTDP A NFDPTARSDDG+C YT
Sbjct: 122 YGKAAQQIGVPVPEGCTDPNASNFDPTARSDDGTCLYTF 160
>gi|303281738|ref|XP_003060161.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226458816|gb|EEH56113.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 498
Score = 259 bits (662), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 141/314 (44%), Positives = 195/314 (62%), Gaps = 20/314 (6%)
Query: 24 NLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKM 83
+L N +DG Y+ P FMDK+ VH+ KN ++ +VPLILGIWG KG GKS+ EL M
Sbjct: 144 SLTNVVDGCYVPPRFMDKVCVHLVKNHLAEGVGQVPLILGIWGEKGCGKSYTLELCLRAM 203
Query: 84 GINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKK--------GKMCCLMINDLDAGA 135
+PI++SAGELE AG P + IR+RYR A+ ++ + G++ CL+INDLDAGA
Sbjct: 204 RASPIIVSAGELEDEWAGAPGRRIRERYRAASRLMSQARSISTLTGRLACLVINDLDAGA 263
Query: 136 GRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENP--RVPIIVTGNDFSTLYA 193
G TQ TVN QMV TLMN+ D+PT V + +E+ RVPII+TGND STLYA
Sbjct: 264 GTYRA-TQKTVNMQMVMGTLMNLCDHPTSVSVGAEEWREDRELRRVPIIITGNDLSTLYA 322
Query: 194 PLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQS---IDFFGALR 250
PL+RDGRM+KF WAP+ ++R + + V D ++LV F Q+ +DFFGAL
Sbjct: 323 PLLRDGRMDKFMWAPSIDERAAAVHAVMADAGVTARDALELVRAFSNQARSPLDFFGALH 382
Query: 251 ARVYDDEVRKWIS-GVGVGSIGKSLVN---SKEAAPTFEQ--PRMTMEKLLEYGNMIVQE 304
AR D V +WI+ G +G +L+ AP+ ++ R+T+E LLE G + +E
Sbjct: 383 ARTVDAAVLEWIARNGGARGMGDALLRGDARTRKAPSVDRSSSRLTLEALLEIGRELERE 442
Query: 305 QENVKRVQLADKYL 318
Q+ V V+L D+Y+
Sbjct: 443 QQRVLDVRLVDEYM 456
>gi|156106226|gb|ABU49419.1| rubisco activase [Camellia sinensis]
Length = 139
Score = 258 bits (658), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 122/134 (91%), Positives = 126/134 (94%)
Query: 93 GELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVN 152
GELESGNAGEPAKLIRQRYREA+DII+KGKMCCL INDLDAGAGRMGGTTQYTVNNQMVN
Sbjct: 4 GELESGNAGEPAKLIRQRYREASDIIRKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVN 63
Query: 153 ATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRED 212
ATLMNIADNPT VQLPGMYNKE+N RVPIIVTGNDFSTLYAPLIRDGRMEK +WAP RED
Sbjct: 64 ATLMNIADNPTSVQLPGMYNKEDNARVPIIVTGNDFSTLYAPLIRDGRMEKLHWAPNRED 123
Query: 213 RIGVCKGIFRNDNV 226
RIGVC GIFR DN
Sbjct: 124 RIGVCMGIFRTDNC 137
>gi|168812226|gb|ACA30289.1| putative ribulose-1,5-bisphosphate carboxylase/oxygenase activase
alpha 2 [Cupressus sempervirens]
Length = 145
Score = 257 bits (657), Expect = 5e-66, Method: Compositional matrix adjust.
Identities = 120/145 (82%), Positives = 134/145 (92%)
Query: 172 NKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDI 231
NKE+NPRVPI+VTGNDFSTLYAPLIRDGRMEKFYWAPTR+DRIGVCKGIFR DN++D I
Sbjct: 1 NKEDNPRVPIVVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRIGVCKGIFRTDNISDAAI 60
Query: 232 VKLVDTFPGQSIDFFGALRARVYDDEVRKWISGVGVGSIGKSLVNSKEAAPTFEQPRMTM 291
VK+VD+FPGQSI+FFGALRARVYDDEVRKWI VGV IGK LVNS++ PTFE+P MT+
Sbjct: 61 VKIVDSFPGQSINFFGALRARVYDDEVRKWIGEVGVEGIGKKLVNSRDGPPTFEKPAMTV 120
Query: 292 EKLLEYGNMIVQEQENVKRVQLADK 316
EKLLEYGNM+V+EQENVKRVQLADK
Sbjct: 121 EKLLEYGNMLVKEQENVKRVQLADK 145
>gi|47176692|gb|AAT12492.1| putative RuBisCo activase protein [Zantedeschia hybrid cultivar]
Length = 244
Score = 254 bits (648), Expect = 7e-65, Method: Compositional matrix adjust.
Identities = 122/240 (50%), Positives = 170/240 (70%), Gaps = 6/240 (2%)
Query: 84 GINPIMMSAGELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLMINDLDAGAGRMGGTT 142
GI PI+MSAGELES NAGEP +LIR+RYR A+ +++ +GKM CL IND+DAG GR G T
Sbjct: 1 GIEPIIMSAGELESENAGEPGRLIRERYRTASQVVQNQGKMSCLTINDIDAGLGRFGNT- 59
Query: 143 QYTVNNQMVNATLMNIADNPTCVQLPGMYNKEE-NPRVPIIVTGNDFSTLYAPLIRDGRM 201
Q TVNNQ+ TLMN++DNPT V + + + + R+P+IVTGNDFSTLYAPLIRDGRM
Sbjct: 60 QVTVNNQIAVGTLMNLSDNPTRVSIGQKWRESDVTHRIPVIVTGNDFSTLYAPLIRDGRM 119
Query: 202 EKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKW 261
EKFYW PT ED I + + ++ D ++ D + +VD+FP Q++DF+GALR+R YD KW
Sbjct: 120 EKFYWQPTHEDIINIVQRMYEKDGISRDAVESIVDSFPNQALDFYGALRSRTYDKSTLKW 179
Query: 262 ISGV-GVGSIGKSLVNSKEAA--PTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYL 318
I + G ++ L+ ++ PTF P+ T+E LLE G+ +++EQE + +L+ +Y+
Sbjct: 180 IDEIGGYENLSDKLLRERKEGKLPTFVPPKQTLEALLESGHSLIEEQELIMNTKLSKEYM 239
>gi|145346081|ref|XP_001417523.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144577750|gb|ABO95816.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 381
Score = 251 bits (642), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 136/307 (44%), Positives = 186/307 (60%), Gaps = 10/307 (3%)
Query: 21 RTYNLDNTIDGLYIAPAFMDKLVVHITKNFM----SLPNIKVPLILGIWGGKGQGKSFQC 76
R + +DG ++ F +++ H+ KN + +L LILGIWG KG GK+
Sbjct: 75 REFRTFAALDGFHVPERFAERVATHVVKNLLKDKGALGATSPALILGIWGHKGCGKTMNV 134
Query: 77 ELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKK-GKMCCLMINDLDAGA 135
EL KMG+ PI+ SAGELE AGEP ++R+RY AA +++ GK+ CL+IND+DAG
Sbjct: 135 ELACKKMGLQPIVTSAGELEDSTAGEPGAMLRRRYLTAARAMRETGKLSCLIINDIDAGI 194
Query: 136 GRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMY---NKEENPRVPIIVTGNDFSTLY 192
G+ TVNNQ+ + TLMNI DNPT V ++ +K N RVPIIVTGNDFS LY
Sbjct: 195 GKFKDDLG-TVNNQITHGTLMNICDNPTIVSEGLVWRTDSKSTNARVPIIVTGNDFSRLY 253
Query: 193 APLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRAR 252
APL RDGRM+ + W PT ++ + + + ++D + LV TFP Q +DFFGALRAR
Sbjct: 254 APLTRDGRMDLWMWEPTSQELVEMIHAMMKDDGLTTACCETLVATFPNQPLDFFGALRAR 313
Query: 253 VYDDEVRKWISGVGVGSIGKSLVNSKEAAP-TFEQPRMTMEKLLEYGNMIVQEQENVKRV 311
VYDD V ++ VG+ + SLV E +T+E+LL G +V EQENV +
Sbjct: 314 VYDDAVSDFVFNVGLDGLNDSLVGLDERRRLKLGDVTITLERLLACGRNVVGEQENVNNI 373
Query: 312 QLADKYL 318
QLA +Y+
Sbjct: 374 QLAREYM 380
>gi|5903100|gb|AAD55658.1|AC008017_31 Highly similar to ribulose-1,5-bisphosphate carboxylase/oxygenase
activase [Arabidopsis thaliana]
Length = 245
Score = 251 bits (641), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 123/241 (51%), Positives = 169/241 (70%), Gaps = 6/241 (2%)
Query: 83 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLMINDLDAGAGRMGGT 141
MG+ P++MSAGELES AGEP +LIR RYR A+ +I+ +GKM LMIND+DAG GR G
Sbjct: 1 MGVEPVIMSAGELESDRAGEPGRLIRDRYRTASQVIQNQGKMSVLMINDIDAGLGRFG-E 59
Query: 142 TQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENP-RVPIIVTGNDFSTLYAPLIRDGR 200
TQ TVNNQ+V TLMN+ADNPT V + + + + RVP+IVTGNDFSTLYAPLIR+GR
Sbjct: 60 TQMTVNNQIVVGTLMNLADNPTRVSVGQEWREADMVNRVPLIVTGNDFSTLYAPLIREGR 119
Query: 201 MEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRK 260
MEKFYW PTRED + + ++ D ++ D++ +VD FP Q++DF+GALR+R YD + K
Sbjct: 120 MEKFYWQPTREDIVNIVSRMYEKDGISRKDVISIVDKFPNQALDFYGALRSRTYDRSILK 179
Query: 261 WISGV-GVGSIGKSLVNSK--EAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKY 317
W+ G+ ++GK L+ K + P F P T+E LLE G ++ EQ+ + +L+ +Y
Sbjct: 180 WVDEAGGMETLGKVLLRRKKTQEVPQFTAPEQTVEALLESGYSLINEQKLIMETKLSKEY 239
Query: 318 L 318
+
Sbjct: 240 M 240
>gi|308803006|ref|XP_003078816.1| 26S proteasome regulatory complex, ATPase RPT4 (ISS) [Ostreococcus
tauri]
gi|116057269|emb|CAL51696.1| 26S proteasome regulatory complex, ATPase RPT4 (ISS) [Ostreococcus
tauri]
Length = 584
Score = 251 bits (640), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 140/321 (43%), Positives = 200/321 (62%), Gaps = 24/321 (7%)
Query: 8 AVMSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMS----LPNIKVPLILG 63
A ++S ++ G R++ N Y+ FM+++ H+ KN ++ L + K ++LG
Sbjct: 63 ADVASGEHREGGFRSFG--NVEGEFYVPERFMERVATHVAKNLLADRDGLRSAKPAVMLG 120
Query: 64 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKK-GK 122
IWG KG GK+F EL +MG+ PI+ SAGELE G AGEP ++R+RY AA +++ G+
Sbjct: 121 IWGHKGCGKTFNVELACKRMGLMPIVTSAGELEDGTAGEPGAMLRRRYLTAARAMRETGR 180
Query: 123 MCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYN---KEENPRV 179
+ CL+IND+DAG GR TVNNQ+ + TLMNI DNPT V + K N RV
Sbjct: 181 LSCLIINDIDAGIGRFRDDLG-TVNNQITHGTLMNICDNPTLVSEGNAWRHDAKMTNARV 239
Query: 180 PIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVC-KGIFRNDNVADDDIVKLVDTF 238
PIIVTGNDFS LYAPL RDGRM+ W +C I ++D +++ D LVDTF
Sbjct: 240 PIIVTGNDFSRLYAPLTRDGRMD--LW---------ICYTAITKDDGLSEKDCETLVDTF 288
Query: 239 PGQSIDFFGALRARVYDDEVRKWISGVGVGSIGKSLVNSKEAA-PTFEQPRMTMEKLLEY 297
P Q +DFFGA+RARVYDD VR +I VG+ + ++LV E+ T + ++E+L++
Sbjct: 289 PQQPLDFFGAIRARVYDDAVRDFILDVGLVGMNEALVGGVESKRKTLGKVNASLERLIQA 348
Query: 298 GNMIVQEQENVKRVQLADKYL 318
G+ + +EQENV +QLA +Y+
Sbjct: 349 GHELCEEQENVSNIQLAREYM 369
>gi|255078274|ref|XP_002502717.1| predicted protein [Micromonas sp. RCC299]
gi|226517982|gb|ACO63975.1| predicted protein [Micromonas sp. RCC299]
Length = 396
Score = 245 bits (626), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 122/259 (47%), Positives = 171/259 (66%), Gaps = 21/259 (8%)
Query: 21 RTYNLDNTIDGLYIAPAFMDKLVVHITKNFM-----------SLPNIKVPLILGIWGGKG 69
R++N N + ++ F+D++ +HI KN + +L +VPLILGIWG KG
Sbjct: 141 RSFN--NLVGEFHVPKQFVDRVALHIAKNLLMDSTNPGVGENALGLTRVPLILGIWGSKG 198
Query: 70 QGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLMI 128
GK+F EL +G++P++MSAGELE AGEP +LIR+RYR AA+I+K +GK CL+I
Sbjct: 199 CGKTFNLELACKALGVHPVVMSAGELEDEWAGEPGRLIRRRYRHAAEIMKVRGKATCLII 258
Query: 129 NDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCV------QLPGMYNKEENPRVPII 182
ND+DAG G TQ TVN QMV TLMNI D+P V ++ + E RVPII
Sbjct: 259 NDIDAGVGWFK-QTQATVNTQMVMGTLMNICDHPNFVSNEEDDEIHAYRDDEYIRRVPII 317
Query: 183 VTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQS 242
+TGND STLYAPL+RDGRM+KFYW+PTRED + ++++D+V + +LV + Q
Sbjct: 318 ITGNDLSTLYAPLLRDGRMDKFYWSPTREDICDMVHAMYKDDDVPRATVERLVQAYSHQP 377
Query: 243 IDFFGALRARVYDDEVRKW 261
+DFFGA+R+R+YD+ + +W
Sbjct: 378 LDFFGAIRSRMYDEAIARW 396
>gi|412985424|emb|CCO18870.1| predicted protein [Bathycoccus prasinos]
Length = 1026
Score = 244 bits (623), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 127/257 (49%), Positives = 170/257 (66%), Gaps = 14/257 (5%)
Query: 18 QGLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFM--SLPNI-KVPLILGIWGGKGQGKSF 74
Q +R +N N + ++ F++K+ +H+ KNFM + PN VPLILG+WGGKG GK+F
Sbjct: 159 QEVRQFN--NLVGDYFVPEQFIEKVALHVCKNFMCAAQPNSPNVPLILGVWGGKGCGKTF 216
Query: 75 QCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLMINDLDA 133
EL K+G+ PI+ SAGELE +AG P +LIRQRYR A ++++ GKM CL++ND+DA
Sbjct: 217 NLELACKKLGMMPIVTSAGELEDESAGGPGRLIRQRYRRAGEVVRVHGKMSCLIVNDIDA 276
Query: 134 GAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENP-----RVPIIVTGNDF 188
G G T Q TVNNQ V TLMN+ D+P V L G +E+ R+PIIVTGND
Sbjct: 277 GLGWFKDTQQ-TVNNQTVCGTLMNLCDHPELVSL-GEERREDGSNLQTVRIPIIVTGNDL 334
Query: 189 STLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVAD-DDIVKLVDTFPGQSIDFFG 247
S LYAPL+RDGRMEK+YW P +D + + +F++D + DD LV FP Q +DFFG
Sbjct: 335 SRLYAPLLRDGRMEKWYWDPQFDDIVNMVDALFKDDPLWSIDDTRALVAKFPNQPLDFFG 394
Query: 248 ALRARVYDDEVRKWISG 264
A R+ VYDD +R W+ G
Sbjct: 395 ATRSTVYDDAIRNWMIG 411
>gi|303290017|ref|XP_003064296.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226454612|gb|EEH51918.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 505
Score = 243 bits (621), Expect = 9e-62, Method: Compositional matrix adjust.
Identities = 137/342 (40%), Positives = 192/342 (56%), Gaps = 48/342 (14%)
Query: 24 NLDNTIDGLYIAPAFMDKLVVHITKNFMSLPN------------IKVPLILGIWGGKGQG 71
+ N ++ P F+DK+ +H+ KN M+ + KVPLILG+WG KG G
Sbjct: 160 SFKNLFGDFHVPPLFVDKVSLHVAKNLMADSDNPGASANPLGGLTKVPLILGVWGAKGCG 219
Query: 72 KSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLMIND 130
K+F EL + I P++MSAGELE AG P +LIR RYR+AA+II+ GKM CL+IND
Sbjct: 220 KTFNLELACKALDITPVVMSAGELEDEWAGNPGRLIRSRYRKAAEIIRNHGKMSCLIIND 279
Query: 131 LDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCV------QLPGMYNKEENPRVPIIVT 184
+DAG GR TQ TVN QMV TLMN+ D+PT V ++ +E RVPIIVT
Sbjct: 280 IDAGVGRFK-RTQATVNTQMVMGTLMNLCDHPTQVSNEEDDEIHEYREEERIRRVPIIVT 338
Query: 185 GNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSID 244
GND STLYAPL+RDGRMEKFYW PTR D + ++R+D+V+ + + +LV GQ +D
Sbjct: 339 GNDLSTLYAPLLRDGRMEKFYWQPTRTDIADMVHAMYRDDDVSRETVERLVARHEGQPLD 398
Query: 245 FFGALRARVYDDEVRKWISGVG-------------VGSIGKSLVNSKEA----------- 280
FFGA RAR+YD + +W ++G+ L+ ++
Sbjct: 399 FFGATRARMYDRCIVEWAESFRSETPDPVTGQRHVTKAMGEHLMKNRTRERPDDEHDPGD 458
Query: 281 ----APTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYL 318
P F + E L+ + + + +EQ V +L++ Y+
Sbjct: 459 FVLWKPDFTVQDCSEEALMRHADDLAREQRLVNEKRLSEDYM 500
>gi|412986205|emb|CCO17405.1| predicted protein [Bathycoccus prasinos]
Length = 596
Score = 243 bits (620), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 131/282 (46%), Positives = 169/282 (59%), Gaps = 4/282 (1%)
Query: 42 LVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAG 101
L+ + K FM I PL+LGIWGGKG GKSF EL AK+G+ PI+ SAGELE AG
Sbjct: 97 LMHYQAKTFMKKRTIVSPLVLGIWGGKGCGKSFNVELACAKLGVLPIVTSAGELEDATAG 156
Query: 102 EPAKLIRQRYREAADIIKK-GKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIAD 160
EP KL+R+RY A + ++ G CL+IND+DAG GR TT TVNNQ+V TLMNIAD
Sbjct: 157 EPGKLLRRRYLAAGKMTRETGVPTCLIINDIDAGVGRFKHTTSSTVNNQIVQGTLMNIAD 216
Query: 161 NPTCV--QLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCK 218
NPT V + N+ PRVP+IVTGNDFS LYAPL RDGRM+KF+W P+RE+ +G+
Sbjct: 217 NPTNVYEDTSIVGNRASVPRVPVIVTGNDFSRLYAPLARDGRMDKFFWEPSREEIVGIMT 276
Query: 219 GIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISGVGVGSIGKSL-VNS 277
IF + D KLV FP Q +DFF A+R R D V + + L N
Sbjct: 277 PIFAQHGLDKRDTEKLVSHFPNQPLDFFSAVRNRAIDAFVLDFCVENEMAFTSALLDANK 336
Query: 278 KEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLS 319
+ + ++ E L + EQ+NV +QL+ +YL+
Sbjct: 337 SSSQSKVSERTVSYETFLSAARYVQNEQQNVNNLQLSREYLA 378
>gi|145353113|ref|XP_001420873.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144581108|gb|ABO99166.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 342
Score = 240 bits (612), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 124/262 (47%), Positives = 170/262 (64%), Gaps = 24/262 (9%)
Query: 27 NTIDGLYIAPAFMDKLVVHITKNFM---SLPNIK--------------VPLILGIWGGKG 69
N + + PAFM+K+ H+ KNF+ L +++ PLILG+WGGKG
Sbjct: 82 NLVGDYHCPPAFMEKVSGHLVKNFLFGGGLRHVREMTNEAGVVVQPPNTPLILGVWGGKG 141
Query: 70 QGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKK-GKMCCLMI 128
GKSF EL MG+ PI+ SAGELE NAG P +LIR+RY+ A +I+++ G M CL+I
Sbjct: 142 CGKSFNLELACKAMGVTPIITSAGELEDENAGAPGRLIRERYKRAGEILRRTGVMSCLII 201
Query: 129 NDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKE----ENPRVPIIVT 184
ND+DAG G TQ+TVNNQ V TLMN+ D+P V L ++ + RVPIIVT
Sbjct: 202 NDVDAGIGWF-KDTQHTVNNQTVCGTLMNLCDHPELVSLGEDRGEDGKNLQTARVPIIVT 260
Query: 185 GNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRND-NVADDDIVKLVDTFPGQSI 243
GND ST+YAPL+RDGRM+K+YW P+R+D + +F+++ + + D +LV+ FPGQ +
Sbjct: 261 GNDLSTVYAPLLRDGRMDKWYWNPSRDDICDIVHALFKDEVDWSPDATARLVNAFPGQPL 320
Query: 244 DFFGALRARVYDDEVRKWISGV 265
DFFGA RA+VYDD V +W+ V
Sbjct: 321 DFFGAARAKVYDDAVSRWMCEV 342
>gi|303281566|ref|XP_003060075.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226458730|gb|EEH56027.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 390
Score = 231 bits (590), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 130/309 (42%), Positives = 184/309 (59%), Gaps = 19/309 (6%)
Query: 24 NLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKM 83
+L N ++ F DK H+ KN ++ N++ PLILGIWGGKG GKSF EL M
Sbjct: 8 SLANVQGDYHVPERFRDKFATHLVKNALASSNLQTPLILGIWGGKGCGKSFNVELCCRDM 67
Query: 84 GINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKK-GKMCCLMINDLDAGAGRMGGTT 142
G+ PI+ SAGELE AGEP L+R+RY A+ I+ GK DLDAG GR
Sbjct: 68 GVTPIVTSAGELEDPVAGEPGALLRRRYLAASTAIRHTGKPA-----DLDAGIGRH-RDD 121
Query: 143 QYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENP---RVPIIVTGNDFSTLYAPLIRDG 199
+ TVNNQ+V ATLMN+ D+PT V + G + ++ RVPI+VTGND S +YAPL R G
Sbjct: 122 KTTVNNQIVAATLMNLCDDPTRVSVGGEWRADDRARCERVPIVVTGNDLSRVYAPLTRSG 181
Query: 200 RMEKFYWAPTREDRIGVCKGIFRNDNVAD-----DDIVKLVDTFPGQSIDFFGALRARVY 254
RM+ + W PTR++ + + ++D +D + VD F Q +DFFGA R+R
Sbjct: 182 RMDLWMWEPTRDEIAEMVHQLLKDDKRPGGYGGIEDARRFVDAFDAQPLDFFGAARSRCV 241
Query: 255 DDEVRKWISGVGVGSIGKSLVNS----KEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKR 310
DD+VR ++ VGV S+G L++S K + + +++E L+ G I +EQ+NV
Sbjct: 242 DDDVRAFVDRVGVESLGTRLLSSGDKIKSKSVVVGRGDVSLEALVRAGRAIEREQQNVLD 301
Query: 311 VQLADKYLS 319
V+L+ +YL+
Sbjct: 302 VRLSREYLA 310
>gi|255088359|ref|XP_002506102.1| ribulose bisphosphate carboxylase/oxygenase activase [Micromonas
sp. RCC299]
gi|226521373|gb|ACO67360.1| ribulose bisphosphate carboxylase/oxygenase activase [Micromonas
sp. RCC299]
Length = 395
Score = 218 bits (556), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 123/307 (40%), Positives = 182/307 (59%), Gaps = 24/307 (7%)
Query: 33 YIAPAFMDKLVVHITKNFM--SLPNI-KVPLILGIWGGKGQGKSFQCELVFAKMGINPIM 89
+I F+D+ HI KN + N+ VPLIL +WGGKG GKSF EL ++G+ P++
Sbjct: 92 HIPDRFLDRFATHIAKNLLIDGGANLGSVPLILCVWGGKGCGKSFNLELCCKRLGVFPVV 151
Query: 90 MSAGELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLMINDLDAGAGRMGGTTQYTVNN 148
+SAGELE AGEP ++R+RY A + G C+++ND+DAG GR + TVNN
Sbjct: 152 VSAGELEDPTAGEPGAMLRRRYLTAGKHMSASGAPTCVIVNDVDAGVGRF-KDDKATVNN 210
Query: 149 QMVNATLMNIADNPTCVQLPGMYNKEEN---PRVPIIVTGNDFSTLYAPLIRDGRMEKFY 205
Q+ ATLMN+ D P V + G + ++ PRVPI+VT ND S LYAPL R+GR + +
Sbjct: 211 QIAQATLMNLCDEPNRVSVGGEWRSDDRAHCPRVPIVVTANDPSVLYAPLTRNGRTDLWM 270
Query: 206 WAPTREDRIGVCKGIFRNDNVA-----DDDIVKLVDTFPGQSIDFFGALRARVYDDEVRK 260
W PTR + + K + + A + D ++LV+ FP Q +DFFGA+R+R DD VR+
Sbjct: 271 WEPTRGE---ITKMVHDALDGAPGYGGESDALELVNAFPSQPLDFFGAVRSRCADDAVRR 327
Query: 261 WISGVGVGSIGKSLVNSKE--------AAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQ 312
+I+ VG+ ++G +L + +A T ++ LLE G I +EQ+NV V
Sbjct: 328 FIARVGLENLGATLCGHRGREGGDPGWSASTLTGMDASLRSLLEAGAEIAREQQNVMDVA 387
Query: 313 LADKYLS 319
L+ +Y++
Sbjct: 388 LSREYVA 394
>gi|326493048|dbj|BAJ84985.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326524450|dbj|BAK00608.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 206
Score = 207 bits (526), Expect = 8e-51, Method: Compositional matrix adjust.
Identities = 102/202 (50%), Positives = 140/202 (69%), Gaps = 5/202 (2%)
Query: 121 GKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEE-NPRV 179
GKM CLMINDLDAG GR G T Q TVNNQ+V TLMN+ADNP V + + + + R+
Sbjct: 1 GKMSCLMINDLDAGLGRFGNT-QMTVNNQIVVGTLMNLADNPNRVSVGQKWRESDITHRI 59
Query: 180 PIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFP 239
PII TGNDFSTLYAPLIRDGRMEKFYW PTRED I + ++ D ++ +++ +VDTFP
Sbjct: 60 PIIATGNDFSTLYAPLIRDGRMEKFYWQPTREDIINIIHRMYTKDGLSLEEVSSIVDTFP 119
Query: 240 GQSIDFFGALRARVYDDEVRKWISGV-GVGSIGKSLVNSK--EAAPTFEQPRMTMEKLLE 296
Q++DF+GALR+R YD + +W++ + G +G+ L+ K E PTF P+ T++ L++
Sbjct: 120 NQALDFYGALRSRTYDQAILQWVNDIGGYEQLGEKLLKRKNREKLPTFIPPKPTLDALIQ 179
Query: 297 YGNMIVQEQENVKRVQLADKYL 318
GN +V+EQ V L+ +Y+
Sbjct: 180 SGNSLVEEQAFVMNSNLSKEYM 201
>gi|414585019|tpg|DAA35590.1| TPA: hypothetical protein ZEAMMB73_040721 [Zea mays]
Length = 203
Score = 205 bits (522), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 101/200 (50%), Positives = 138/200 (69%), Gaps = 5/200 (2%)
Query: 123 MCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEE-NPRVPI 181
M CLMINDLDAG GR G T Q TVNNQ+ TLMN+ADNPT V + + + + RVPI
Sbjct: 1 MSCLMINDLDAGVGRFGNT-QMTVNNQIAVGTLMNLADNPTRVSIGQKWRESDVTHRVPI 59
Query: 182 IVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQ 241
IVTGNDFSTLYAPLIRDGRMEKFYW P RED I + G++ D ++ +++ ++VD FP Q
Sbjct: 60 IVTGNDFSTLYAPLIRDGRMEKFYWQPNREDIISIVHGMYIKDGLSVEEVSRIVDAFPNQ 119
Query: 242 SIDFFGALRARVYDDEVRKWISGV-GVGSIGKSLVNSK--EAAPTFEQPRMTMEKLLEYG 298
++DF+GALR+R YD + +W+ + G + + L+ K E PTF P+ T+E L+E G
Sbjct: 120 ALDFYGALRSRTYDQAILEWVEEIGGHEQLNEKLLKRKKGEELPTFIPPKPTLEALIESG 179
Query: 299 NMIVQEQENVKRVQLADKYL 318
+V+EQE + +L+ +Y+
Sbjct: 180 YSLVKEQELIMSSKLSKEYM 199
>gi|302836245|ref|XP_002949683.1| hypothetical protein VOLCADRAFT_42653 [Volvox carteri f.
nagariensis]
gi|300265042|gb|EFJ49235.1| hypothetical protein VOLCADRAFT_42653 [Volvox carteri f.
nagariensis]
Length = 323
Score = 199 bits (507), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 123/323 (38%), Positives = 182/323 (56%), Gaps = 25/323 (7%)
Query: 10 MSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMS-----LPNIKVPLILGI 64
+ +YD+ RT+N N + Y+APAF++K+ +H+ KN++ N++VPLILGI
Sbjct: 15 LRAYDF-----RTFN--NIVGDYYVAPAFLEKVALHMAKNYLYDLGAIASNVRVPLILGI 67
Query: 65 WGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIK-KGKM 123
WG KG GK+FQ EL ++G ++MS+GELE AG P KLIR+RYR+A+++ K +GKM
Sbjct: 68 WGEKGMGKTFQTELALKQLGAETVVMSSGELEHEWAGTPGKLIRERYRKASEMSKVRGKM 127
Query: 124 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEEN-PRVPII 182
L+I+D+DAG G Q TVNNQ+V TLMNI DNP V + + E+ R PII
Sbjct: 128 TALLIHDIDAGLGHF-DHVQVTVNNQIVIGTLMNICDNPNVVSVGQDWRSEDRIRRTPII 186
Query: 183 VTGNDFSTLYAP-LIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQ 241
VTG + ++ L+R + + P + + C + + V F Q
Sbjct: 187 VTGRGPTRRFSRYLLRVTSVTQ----PHSTNHLSNC--YLPTNTPCCTYVYTYVCRFKRQ 240
Query: 242 SIDFFGALRARVYDDEVRKWI-SGVGVGSIGKSLV--NSKEAAPTFEQPRMTMEKLLEYG 298
+DFFGALRA YD+++R+WI + G G+ V K P FE R+T++ L+ G
Sbjct: 241 PLDFFGALRASTYDEQIRQWIRRDITGGLWGEVCVGGTDKSGLPRFEPVRLTVDMLVAEG 300
Query: 299 NMIVQEQENVKRVQLADKYLSEA 321
+ EQ+ V +L+ YL
Sbjct: 301 ERLENEQQQVLNHKLSADYLRHV 323
>gi|345111061|pdb|3THG|A Chain A, Crystal Structure Of The Creosote Rubisco Activase
C-Domain
Length = 107
Score = 183 bits (464), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 87/102 (85%), Positives = 94/102 (92%)
Query: 209 TREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISGVGVG 268
TREDRIGVCKGIFR DNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKW+S VGV
Sbjct: 6 TREDRIGVCKGIFRTDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWVSEVGVD 65
Query: 269 SIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKR 310
+IGK LVNSKE P+FEQP+MT++KLL YG M+VQEQENVKR
Sbjct: 66 TIGKKLVNSKEGPPSFEQPKMTIDKLLGYGGMLVQEQENVKR 107
>gi|133711850|gb|ABO36654.1| RuBisCO activase [Cucumis sativus]
Length = 111
Score = 182 bits (462), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 86/108 (79%), Positives = 96/108 (88%)
Query: 207 APTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISGVG 266
APTREDRIG+C GIFR D V +DIVKLVDTFPGQSIDFFGALRARVYDDEVRKW GVG
Sbjct: 1 APTREDRIGICTGIFRTDGVPFEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWAVGVG 60
Query: 267 VGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLA 314
V IG++LVNSKE+ PTF+QP+MT+EKLLEYGNM+V EQENVKRV+L
Sbjct: 61 VERIGRNLVNSKESPPTFDQPKMTIEKLLEYGNMLVMEQENVKRVKLV 108
>gi|338746118|emb|CCC15108.1| rubisco activase [Lepidodinium chlorophorum]
Length = 252
Score = 170 bits (430), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 84/128 (65%), Positives = 101/128 (78%), Gaps = 3/128 (2%)
Query: 4 GTHYAVMSSYDYISQGLRTY-NLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLIL 62
GTH AVMSS + Q + + + D DGLYIAP F+DK+ VHI KNF+ LP +KVPLIL
Sbjct: 127 GTHNAVMSSGPNVHQ--KNFGDSDVMQDGLYIAPDFLDKMTVHIAKNFLELPLVKVPLIL 184
Query: 63 GIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGK 122
GIWGGKGQGK+FQ EL + K+GINPI+MSAGELESGNAGEPAKL+R +EA++ IKKGK
Sbjct: 185 GIWGGKGQGKTFQTELGYRKLGINPIVMSAGELESGNAGEPAKLVRAGNKEASEFIKKGK 244
Query: 123 MCCLMIND 130
MC L IN+
Sbjct: 245 MCFLFINE 252
>gi|388515017|gb|AFK45570.1| unknown [Lotus japonicus]
Length = 184
Score = 169 bits (429), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 81/178 (45%), Positives = 121/178 (67%), Gaps = 4/178 (2%)
Query: 145 TVNNQMVNATLMNIADNPTCVQLPGMYNKEE-NPRVPIIVTGNDFSTLYAPLIRDGRMEK 203
TVNNQ+V TLMN++DNPT V + + + + R+PIIVTGNDFST+YAPLIRDGRM+K
Sbjct: 2 TVNNQIVVGTLMNLSDNPTRVSVGQDWRESDITNRIPIIVTGNDFSTIYAPLIRDGRMDK 61
Query: 204 FYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWIS 263
FYW P RED + ++ D ++ D++ ++VDTFP Q++DF+GALR+R YD + KW+
Sbjct: 62 FYWQPNREDIQNIVHRMYEKDGISRDEVERIVDTFPNQALDFYGALRSRTYDKSILKWVD 121
Query: 264 GV-GVGSIGKSLVNSK--EAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYL 318
+ GV + G ++ + + P F P T++ LLE G +++EQE V +L+ +Y+
Sbjct: 122 DIGGVENFGSKILKRRKDQNLPVFIPPEQTVDALLESGYSLIKEQELVMESKLSKEYM 179
>gi|111162643|gb|ABH07508.1| RuBisCO activase, partial [Nicotiana attenuata]
Length = 100
Score = 159 bits (403), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 73/100 (73%), Positives = 87/100 (87%)
Query: 222 RNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISGVGVGSIGKSLVNSKEAA 281
R DNV ++ ++K+VDTFPGQSIDFFGALRARVYDDEVRKW+SG G+ +IG L+NS +
Sbjct: 1 RTDNVPEEAVIKIVDTFPGQSIDFFGALRARVYDDEVRKWVSGTGIEAIGDKLLNSFDGP 60
Query: 282 PTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEA 321
PTFEQP+MT+EKLL YGNM+VQEQENVKRVQLA+ YL EA
Sbjct: 61 PTFEQPKMTVEKLLGYGNMLVQEQENVKRVQLAETYLKEA 100
>gi|168415082|gb|ACA23474.1| rubisco activase [Arachis diogoi]
Length = 94
Score = 157 bits (397), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 75/91 (82%), Positives = 82/91 (90%)
Query: 248 ALRARVYDDEVRKWISGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQEN 307
ALRARVYDDEVRKWISGVGV +GK LVNSKE PTFEQP+MT+EKLLEYGNM+VQEQEN
Sbjct: 1 ALRARVYDDEVRKWISGVGVEGVGKKLVNSKEGPPTFEQPKMTLEKLLEYGNMLVQEQEN 60
Query: 308 VKRVQLADKYLSEAALGEANEDAIQSGNFYG 338
VKRVQLADKYL+EAALG+AN DAI G F+G
Sbjct: 61 VKRVQLADKYLNEAALGDANADAINRGAFFG 91
>gi|356494967|ref|XP_003516352.1| PREDICTED: ribulose bisphosphate carboxylase/oxygenase activase,
chloroplastic-like [Glycine max]
Length = 118
Score = 152 bits (385), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 72/94 (76%), Positives = 81/94 (86%)
Query: 245 FFGALRARVYDDEVRKWISGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQE 304
FFGAL+ARVYDDEVRKWIS VGV IGK LVNSKE P F+QP+MT+ KLLEYGNM+VQE
Sbjct: 18 FFGALKARVYDDEVRKWISVVGVDFIGKKLVNSKEGPPNFDQPKMTLSKLLEYGNMLVQE 77
Query: 305 QENVKRVQLADKYLSEAALGEANEDAIQSGNFYG 338
QENV+RVQLAD YL EAALG+AN+D+I G FYG
Sbjct: 78 QENVERVQLADMYLKEAALGDANQDSINRGTFYG 111
>gi|134035003|sp|P85086.1|RCA_ARAHY RecName: Full=Ribulose bisphosphate carboxylase/oxygenase activase,
chloroplastic; Short=RA; Short=RuBisCO activase
Length = 140
Score = 152 bits (384), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 110/250 (44%), Positives = 111/250 (44%), Gaps = 135/250 (54%)
Query: 1 MGTGTHYAVMSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPL 60
M GTHYAVMSSY+YISQGLR VPL
Sbjct: 26 MNDGTHYAVMSSYEYISQGLR------------------------------------VPL 49
Query: 61 ILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKK 120
ILGIWGGK MGINPIMMSAGELESGNAGEPA
Sbjct: 50 ILGIWGGK--------------MGINPIMMSAGELESGNAGEPA---------------- 79
Query: 121 GKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVP 180
KMCCL INDLDAGAG RVP
Sbjct: 80 -KMCCLFINDLDAGAG-----------------------------------------RVP 97
Query: 181 IIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPG 240
IIVTGNDFSTLYAPLI RIGVC GIFR LVDTFPG
Sbjct: 98 IIVTGNDFSTLYAPLI----------------RIGVCTGIFR-----------LVDTFPG 130
Query: 241 QSIDFFGALR 250
QSIDFFGALR
Sbjct: 131 QSIDFFGALR 140
>gi|307104587|gb|EFN52840.1| hypothetical protein CHLNCDRAFT_26386, partial [Chlorella
variabilis]
Length = 239
Score = 150 bits (379), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 78/187 (41%), Positives = 113/187 (60%), Gaps = 5/187 (2%)
Query: 83 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKK-GKMCCLMINDLDAGAGRMGGT 141
MG+ P+ +SAGELE AGEP + +R+RY AA + G+ CL+I+DLDAG G T
Sbjct: 1 MGVLPVCLSAGELEDEWAGEPGRRLRERYAFAARHTESTGEATCLVISDLDAGVGVFANT 60
Query: 142 TQYTVNNQMVNATLMNIADNPTCVQLPGMYN--KEENPRVPIIVTGNDFSTLYAPLIRDG 199
TVN Q + +LM + D+P V + + RVPI VT ND + LYAPL+R+G
Sbjct: 61 AN-TVNTQNLQGSLMALCDDPLLVSAGQEWAAVRRRALRVPIYVTANDLTCLYAPLVREG 119
Query: 200 RMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVR 259
RM+KFY+ P+R + + +F + D+ L+D FP Q +DFFG+++AR+ D VR
Sbjct: 120 RMDKFYFEPSRGEMAAALRALF-APQLGAADVKVLLDAFPEQPMDFFGSIKARLVDGAVR 178
Query: 260 KWISGVG 266
+W+ G
Sbjct: 179 RWLHQAG 185
>gi|115486825|ref|NP_001068556.1| Os11g0707100 [Oryza sativa Japonica Group]
gi|62733170|gb|AAX95287.1| Similar to ribulose bisphosphate carboxylase/oxygenase activase b,
chloroplastprecursor (rubisco activase b) (ra b) [Oryza
sativa Japonica Group]
gi|62733298|gb|AAX95415.1| ribulose bisphosphate carboxylase/oxygenase activase b,
chloroplastprecursor (rubisco activase b) (ra b)-related
[Oryza sativa Japonica Group]
gi|77552727|gb|ABA95524.1| expressed protein [Oryza sativa Japonica Group]
gi|113645778|dbj|BAF28919.1| Os11g0707100 [Oryza sativa Japonica Group]
gi|125578109|gb|EAZ19331.1| hypothetical protein OsJ_34881 [Oryza sativa Japonica Group]
Length = 366
Score = 137 bits (346), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 74/132 (56%), Positives = 83/132 (62%), Gaps = 34/132 (25%)
Query: 243 IDFFGALRARVYDDEVRKWISGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIV 302
IDFFGALRARVY DEVR+W++ +GV +IG+ L
Sbjct: 269 IDFFGALRARVYGDEVRRWVAEIGVENIGRRL---------------------------- 300
Query: 303 QEQENVKRVQLADKYLSEAALGEANEDAIQSGNFYGKAAQQMNVPVPEGCTDPTAENFDP 362
ENVKRV+LADKYLSEAALG+AN D SG FYGKA QQ VPVP GCTD A N+DP
Sbjct: 301 ---ENVKRVRLADKYLSEAALGDANHD---SGEFYGKAEQQSPVPVPAGCTDQRAANYDP 354
Query: 363 TARSDDGSCQYT 374
TARSDDGSC Y
Sbjct: 355 TARSDDGSCVYN 366
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 60/90 (66%), Positives = 63/90 (70%), Gaps = 21/90 (23%)
Query: 45 HITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPA 104
HI+KN M LPNI QGKSFQC+LVFAKMGIN IMMSAGE PA
Sbjct: 117 HISKNLMKLPNI-------------QGKSFQCDLVFAKMGINLIMMSAGE--------PA 155
Query: 105 KLIRQRYREAADIIKKGKMCCLMINDLDAG 134
KLIRQRYREAAD+I KGKMC L INDLDAG
Sbjct: 156 KLIRQRYREAADMINKGKMCVLFINDLDAG 185
>gi|187470377|gb|ACD11149.1| ribulose bisphosphate carboxylase activase [Lemna minor]
Length = 68
Score = 134 bits (338), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 65/68 (95%), Positives = 65/68 (95%)
Query: 70 QGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMIN 129
QGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADII KGKMC L IN
Sbjct: 1 QGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIAKGKMCALFIN 60
Query: 130 DLDAGAGR 137
DLDAGAGR
Sbjct: 61 DLDAGAGR 68
>gi|22255887|gb|AAM94806.1| rubisco activase alpha [Gossypium hirsutum]
Length = 76
Score = 134 bits (336), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 62/76 (81%), Positives = 67/76 (88%)
Query: 300 MIVQEQENVKRVQLADKYLSEAALGEANEDAIQSGNFYGKAAQQMNVPVPEGCTDPTAEN 359
M+V EQENVKRVQLADKYLSEAALGEANED+I G FYGKAAQQ+ VPVPEGCTDP A+N
Sbjct: 1 MLVAEQENVKRVQLADKYLSEAALGEANEDSINRGTFYGKAAQQVGVPVPEGCTDPNADN 60
Query: 360 FDPTARSDDGSCQYTL 375
FDPTARSDDG+C Y
Sbjct: 61 FDPTARSDDGTCTYKF 76
>gi|301323237|gb|ADK70390.1| rubisco activase [Musa AB Group]
Length = 68
Score = 124 bits (312), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 57/67 (85%), Positives = 63/67 (94%)
Query: 307 NVKRVQLADKYLSEAALGEANEDAIQSGNFYGKAAQQMNVPVPEGCTDPTAENFDPTARS 366
NVKRVQLADKYLSEAALG+AN+DAI++G FYGKAAQQ+N+PVPEGCTDP A NFDPTARS
Sbjct: 2 NVKRVQLADKYLSEAALGDANQDAIKTGQFYGKAAQQVNIPVPEGCTDPIATNFDPTARS 61
Query: 367 DDGSCQY 373
DDGSC Y
Sbjct: 62 DDGSCLY 68
>gi|308810312|ref|XP_003082465.1| 26S proteasome regulatory complex, ATPase RPT4 (ISS) [Ostreococcus
tauri]
gi|116060933|emb|CAL57411.1| 26S proteasome regulatory complex, ATPase RPT4 (ISS) [Ostreococcus
tauri]
Length = 555
Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 53/113 (46%), Positives = 75/113 (66%), Gaps = 7/113 (6%)
Query: 156 MNIADNPTCVQLPGMYNKEE-----NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTR 210
MN+ D+P V + G ++ RVPIIVT ND ST+YAPL+RDGRM+K+YW+PTR
Sbjct: 1 MNLCDHPELVSV-GEDRGDDGRNMVTARVPIIVTANDLSTVYAPLLRDGRMDKWYWSPTR 59
Query: 211 EDRIGVCKGIFRNDNVAD-DDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWI 262
+D + +F+++ + +LVD FPGQ +DFFGA RA+VYDD + W+
Sbjct: 60 DDICDIVHALFKDEEKWTYEATARLVDEFPGQPLDFFGAARAKVYDDAIHHWM 112
>gi|18476502|gb|AAL50316.1| ultraviolet-B-repressible rubisco activase [Pisum sativum]
Length = 50
Score = 92.4 bits (228), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 43/50 (86%), Positives = 48/50 (96%)
Query: 287 PRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAALGEANEDAIQSGNF 336
P+MT+EKLLEYGNM+VQEQENVKRVQLADKYLSEAALG+ANEDAI+ G F
Sbjct: 1 PKMTLEKLLEYGNMLVQEQENVKRVQLADKYLSEAALGDANEDAIKRGTF 50
>gi|62176924|emb|CAG25592.1| putative rubisco activase [Triticum durum]
Length = 50
Score = 84.7 bits (208), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 37/50 (74%), Positives = 49/50 (98%)
Query: 289 MTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAALGEANEDAIQSGNFYG 338
MT+EKLLEYG+M+VQEQ+NVKRVQLAD Y+S+AALG+AN+DA+++G+FYG
Sbjct: 1 MTVEKLLEYGHMLVQEQDNVKRVQLADTYMSQAALGDANQDAMKTGSFYG 50
>gi|145566934|sp|P85111.1|RCA_VITSX RecName: Full=Ribulose bisphosphate carboxylase/oxygenase activase,
chloroplastic; Short=RA; Short=RuBisCO activase
Length = 62
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 39/63 (61%), Positives = 41/63 (65%), Gaps = 17/63 (26%)
Query: 80 FAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMG 139
+MGINPIMMSAGELESGNAGEPA KMCCL INDLDAGAGR+G
Sbjct: 13 ITRMGINPIMMSAGELESGNAGEPA-----------------KMCCLFINDLDAGAGRIG 55
Query: 140 GTT 142
T
Sbjct: 56 VCT 58
>gi|86611442|gb|ABD14394.1| chloroplast RuBisCO small isoform precursor [Oryza sativa Japonica
Group]
Length = 31
Score = 63.9 bits (154), Expect = 1e-07, Method: Composition-based stats.
Identities = 26/31 (83%), Positives = 28/31 (90%)
Query: 345 NVPVPEGCTDPTAENFDPTARSDDGSCQYTL 375
N+PVPEGCTDP A+NFDPTARSDDGSC YT
Sbjct: 1 NLPVPEGCTDPVAKNFDPTARSDDGSCLYTF 31
>gi|22255885|gb|AAM94805.1| rubisco activase beta [Gossypium hirsutum]
Length = 37
Score = 62.0 bits (149), Expect = 4e-07, Method: Composition-based stats.
Identities = 30/37 (81%), Positives = 33/37 (89%)
Query: 300 MIVQEQENVKRVQLADKYLSEAALGEANEDAIQSGNF 336
M+V EQENVKRVQLADKYLSEAALG AN+DAI+ G F
Sbjct: 1 MLVAEQENVKRVQLADKYLSEAALGNANDDAIKRGAF 37
>gi|378729074|gb|EHY55533.1| adenosinetriphosphatase [Exophiala dermatitidis NIH/UT8656]
Length = 814
Score = 58.2 bits (139), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 66/256 (25%), Positives = 110/256 (42%), Gaps = 33/256 (12%)
Query: 38 FMDKLVVHITK-NFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELE 96
F D LV+ +T+ + ++ P + I G G GK+ A++G+N I +SA +
Sbjct: 213 FEDLLVLPMTRPEIYTSSKVQPPRGVLIHGPPGCGKTMIANAFAAELGVNFISISAPSIV 272
Query: 97 SGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLM 156
SG +GE K +R + EA K+ C + I+++DA + + Q + ++V L
Sbjct: 273 SGMSGESEKALRDHFDEA----KRAAPCLIFIDEIDAITPKR-ESAQREMEKRIVAQLL- 326
Query: 157 NIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKF--YWAPTREDRI 214
TC+ + + P V ++ N +L L R GR +K P R
Sbjct: 327 ------TCMDDLALEKTDGKP-VIVLAATNRPDSLDVALRRGGRFDKEINMSVPNEPVRE 379
Query: 215 GVCKGIFRNDNVADD-DIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISGVGVGSIGKS 273
+ + + R N+ADD D L PG F GA ++ +S G +I +
Sbjct: 380 QILRALTRETNLADDVDFSLLAKRTPG----FVGA--------DLNDLVSTAGAAAIKRY 427
Query: 274 L----VNSKEAAPTFE 285
L NS+ A T +
Sbjct: 428 LDTLKANSEAATATMD 443
Score = 38.5 bits (88), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 46/196 (23%), Positives = 80/196 (40%), Gaps = 21/196 (10%)
Query: 64 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 123
+WG G GK+ + N I + EL + GE + +RQ + A +
Sbjct: 583 LWGPPGCGKTLLAKACANSSHANFISVKGPELLNKYVGESERAVRQVFNRARSSVP---- 638
Query: 124 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 183
+ ++LDA R GT + ++VN L +L G+ N E + +I
Sbjct: 639 VIIFFDELDALVPRRDGTMS-EASARVVNTLL---------TELDGVGNSREG--IYVIA 686
Query: 184 TGNDFSTLYAPLIRDGRMEK--FYWAPTREDRIGVCKGIFR--NDNVADDDIVKLVDTFP 239
N + ++R GR+E F P E+R+ + + + + ++ V D+ I + +
Sbjct: 687 ATNRPDIIDPAMLRPGRLETLLFVGLPNAEERVDILRTLCKKLHNFVFDETIAAIARSCE 746
Query: 240 GQS-IDFFGALRARVY 254
G S D LR Y
Sbjct: 747 GFSGADLEALLRRAGY 762
>gi|428221330|ref|YP_007105500.1| AAA ATPase [Synechococcus sp. PCC 7502]
gi|427994670|gb|AFY73365.1| AAA+ family ATPase [Synechococcus sp. PCC 7502]
Length = 515
Score = 57.8 bits (138), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 55/200 (27%), Positives = 92/200 (46%), Gaps = 29/200 (14%)
Query: 53 LPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIM-MSAGELESGNAGEPAKLIRQRY 111
LP+ K L++GI +G GKS C A + P++ + G+L G+ RQ
Sbjct: 265 LPHPKGVLLMGI---QGTGKSL-CAKAIAHLWNLPLLRLDVGKLFGSLLGQSESRTRQTI 320
Query: 112 REAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMY 171
++A I C L I+++D G + G + + +Q V ATL+ +
Sbjct: 321 QQAEAI----SPCILWIDEIDKAFGGISGISMDSGTSQRVFATLLT-------------W 363
Query: 172 NKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCK---GIFRNDNV 226
+E+ V I+ T N+ L L+R GR ++ ++ P E+R + K FR D+V
Sbjct: 364 MQEKTSSVFIVATANNIHVLPPELLRKGRFDEIFFINLPNYEERKQILKVHLQRFRPDSV 423
Query: 227 AD--DDIVKLVDTFPGQSID 244
A D I ++ + F G I+
Sbjct: 424 AFDLDAIAQITEDFSGAEIE 443
>gi|11498895|ref|NP_070126.1| cell division protein CDC48 [Archaeoglobus fulgidus DSM 4304]
gi|41688749|sp|O28972.1|Y1297_ARCFU RecName: Full=Cell division cycle protein 48 homolog AF_1297
gi|2649281|gb|AAB89948.1| cell division control protein 48, AAA family (cdc48-1)
[Archaeoglobus fulgidus DSM 4304]
Length = 733
Score = 57.8 bits (138), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 52/191 (27%), Positives = 88/191 (46%), Gaps = 19/191 (9%)
Query: 55 NIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREA 114
NIK P + ++G G GK+ + V + N I + EL S GE K +R+ +R+A
Sbjct: 485 NIKPPRGILLFGPPGTGKTLLAKAVANESNANFISVKGPELLSKWVGESEKHVREMFRKA 544
Query: 115 ADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKE 174
+ C + +++D+ A R GG V ++V+ L +L G+ E
Sbjct: 545 RQVAP----CVIFFDEIDSLAPRRGGIGDSHVTERVVSQLL---------TELDGL---E 588
Query: 175 ENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCKGIFRNDNVADD-DI 231
E V +I N + L+R GR+E+ + P ++ R+ + K R +ADD +I
Sbjct: 589 ELKDVVVIAATNRPDMIDPALLRPGRLERHIYIPPPDKKARVEIFKIHLRGKPLADDVNI 648
Query: 232 VKLVDTFPGQS 242
+L + G S
Sbjct: 649 EELAEKTEGYS 659
>gi|331699452|ref|YP_004335691.1| Microtubule-severing ATPase [Pseudonocardia dioxanivorans CB1190]
gi|326954141|gb|AEA27838.1| Microtubule-severing ATPase [Pseudonocardia dioxanivorans CB1190]
Length = 802
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 53/225 (23%), Positives = 99/225 (44%), Gaps = 25/225 (11%)
Query: 10 MSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLV--VHITKNFMSLPNIKVPLILGIWGG 67
MSS + + G LD+ D + A + ++ + +F L + P + ++G
Sbjct: 525 MSSSETLHTG--GIGLDDVGDMTEVKQALTEAVLWPLQYPDSFARL-GVDAPRGVLLYGP 581
Query: 68 KGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLM 127
G GK+F + +N + + EL GE + +R+ +R+A+D +
Sbjct: 582 PGCGKTFLLRALAGTGQLNVLSVKGAELLDKYVGESERAVRELFRKASD----AAPALVF 637
Query: 128 INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGND 187
++++DA A R GG+T V +++V A L + + + R ++V +
Sbjct: 638 LDEVDALAPRRGGSTDSGVADRVVAALLTEL-------------DGAQPLREVVVVGATN 684
Query: 188 FSTLYAP-LIRDGRMEKFYWAPT--REDRIGVCKGIFRNDNVADD 229
L P L+R GR+E+ + P E R + + RN +ADD
Sbjct: 685 RPELIDPALLRPGRLERLVYVPPPDAEARAAILRAAGRNTPLADD 729
>gi|222641172|gb|EEE69304.1| hypothetical protein OsJ_28586 [Oryza sativa Japonica Group]
Length = 318
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/36 (66%), Positives = 26/36 (72%)
Query: 340 AAQQMNVPVPEGCTDPTAENFDPTARSDDGSCQYTL 375
A Q N+PVPEGCTDP A NFDPTA S+D C YT
Sbjct: 283 AQQAGNLPVPEGCTDPVANNFDPTAMSNDSICLYTF 318
>gi|327400638|ref|YP_004341477.1| AAA family ATPase [Archaeoglobus veneficus SNP6]
gi|327316146|gb|AEA46762.1| AAA family ATPase, CDC48 subfamily [Archaeoglobus veneficus SNP6]
Length = 734
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 49/177 (27%), Positives = 80/177 (45%), Gaps = 18/177 (10%)
Query: 55 NIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREA 114
+IK P + ++G G GK+ + V + N I + EL S GE K +R+ +R+A
Sbjct: 486 DIKPPKGILLFGPPGTGKTLLAKAVANESNANFISVKGPELLSKWVGESEKHVREMFRKA 545
Query: 115 ADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKE 174
+ C L +++D+ A R GG V ++V+ L +L GM E
Sbjct: 546 RQVAP----CVLFFDEIDSLAPRRGGGADSHVTERVVSQLL---------TELDGM---E 589
Query: 175 ENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCKGIFRNDNVADD 229
E V +I N + L+R GR+E+ + P ++ R + K R +ADD
Sbjct: 590 ELKDVVVIAATNRPDIVDPALLRPGRIERHIYIPPPDKKARKEIFKIHLRGKPLADD 646
>gi|308798689|ref|XP_003074124.1| Nuclear AAA ATPase (VCP subfamily) (ISS) [Ostreococcus tauri]
gi|116000296|emb|CAL49976.1| Nuclear AAA ATPase (VCP subfamily) (ISS) [Ostreococcus tauri]
Length = 723
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 42/150 (28%), Positives = 72/150 (48%), Gaps = 16/150 (10%)
Query: 56 IKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 115
+K P L + G G GK+ V A+ G + +S+G++ AGE K +R+ + A
Sbjct: 238 VKFPRGLLLHGPPGTGKTEAVRAVSAEAGAETLTVSSGDVAGAYAGESEKRLRKVFERAR 297
Query: 116 DIIKKGKMCCLMINDLDA--GAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNK 173
++KKG C ++I++LDA R G + V Q++ TLM+ A + V
Sbjct: 298 KLVKKGSPCVIVIDELDAMCPTRRDGNAHEARVVAQLL--TLMDGAGESSEVH------- 348
Query: 174 EENPRVPIIVTGNDFSTLYAPLIRDGRMEK 203
VP++ T + + + L R GR ++
Sbjct: 349 -----VPVVATTSRPNAIDPALRRPGRFDR 373
>gi|448725635|ref|ZP_21708082.1| proteasome-activating nucleotidase [Halococcus morrhuae DSM 1307]
gi|445797859|gb|EMA48297.1| proteasome-activating nucleotidase [Halococcus morrhuae DSM 1307]
Length = 405
Score = 54.7 bits (130), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 49/195 (25%), Positives = 86/195 (44%), Gaps = 20/195 (10%)
Query: 56 IKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 115
I+ P + + G G GK+ + V + I M+ EL GE A+L+R +
Sbjct: 182 IEPPTGVLLHGPPGTGKTMLAKAVANETDATFIKMAGSELVRKFIGEGARLVRDLF---- 237
Query: 116 DIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEE 175
++ + + + I+++DA A + T T + V T+M + L M EE
Sbjct: 238 ELASEHEPAVIFIDEIDAVASKR--TDSKTSGDAEVQRTMMQL--------LSEMDGFEE 287
Query: 176 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPT-----REDRIGV-CKGIFRNDNVADD 229
+ II N F L ++R GR ++ P RE + +G+ +D+VA D
Sbjct: 288 RGDISIIAATNRFDMLDRAILRPGRFDRLIEVPKPGPDGREKIFAIHTRGMNLDDDVAFD 347
Query: 230 DIVKLVDTFPGQSID 244
++ ++ D F G I+
Sbjct: 348 ELAEMADEFSGAEIE 362
>gi|15669345|ref|NP_248150.1| cell division protein CDC48 [Methanocaldococcus jannaschii DSM
2661]
gi|2492505|sp|Q58556.1|Y1156_METJA RecName: Full=Cell division cycle protein 48 homolog MJ1156
gi|1591785|gb|AAB99153.1| cell division control protein 48 (cdc48), AAA family
[Methanocaldococcus jannaschii DSM 2661]
Length = 903
Score = 54.7 bits (130), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 46/188 (24%), Positives = 89/188 (47%), Gaps = 24/188 (12%)
Query: 64 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 123
++G G GK+ + V + G N I + E+ S GE K IR+ +R+A ++
Sbjct: 491 LFGPPGTGKTLLAKAVANESGANFISVKGPEIFSKWVGESEKAIREIFRKA----RQSAP 546
Query: 124 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 183
C + +++DA A + G V +++VN L +L GM E P+ +++
Sbjct: 547 CIIFFDEIDAIAPKRGRDLSSAVTDKVVNQLL---------TELDGM----EEPKDVVVI 593
Query: 184 TGNDFSTLYAP-LIRDGRMEKFYWAPTRED--RIGVCKGIFRNDNVADD----DIVKLVD 236
+ + P L+R GR+++ P ++ R+ + K R+ N+A+D ++ K +
Sbjct: 594 AATNRPDIIDPALLRPGRLDRVILVPVPDEKARLDIFKIHTRSMNLAEDVNLEELAKKTE 653
Query: 237 TFPGQSID 244
+ G I+
Sbjct: 654 GYTGADIE 661
>gi|289192266|ref|YP_003458207.1| AAA family ATPase, CDC48 subfamily [Methanocaldococcus sp.
FS406-22]
gi|288938716|gb|ADC69471.1| AAA family ATPase, CDC48 subfamily [Methanocaldococcus sp.
FS406-22]
Length = 903
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 47/188 (25%), Positives = 88/188 (46%), Gaps = 24/188 (12%)
Query: 64 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 123
++G G GK+ + V + G N I + E+ S GE K IR+ +R+A ++
Sbjct: 491 LFGPPGTGKTLLAKAVANESGANFISVKGPEIFSKWVGESEKAIREIFRKA----RQSAP 546
Query: 124 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 183
C + +++DA A + G V +++VN L +L GM E P+ I++
Sbjct: 547 CIIFFDEIDAIAPKRGRDLSSAVTDKVVNQLL---------TELDGM----EEPKDVIVI 593
Query: 184 TGNDFSTLYAP-LIRDGRMEKFYWAPTRED--RIGVCKGIFRNDNVADD----DIVKLVD 236
+ + P L+R GR+++ P ++ R+ + K R N+A+D ++ K +
Sbjct: 594 AATNRPDIIDPALLRPGRLDRVILVPVPDEKARLDIFKIHTRAMNLAEDVSLEELAKKTE 653
Query: 237 TFPGQSID 244
+ G I+
Sbjct: 654 GYTGADIE 661
>gi|256810701|ref|YP_003128070.1| AAA ATPase [Methanocaldococcus fervens AG86]
gi|256793901|gb|ACV24570.1| AAA family ATPase, CDC48 subfamily [Methanocaldococcus fervens
AG86]
Length = 903
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 46/188 (24%), Positives = 88/188 (46%), Gaps = 24/188 (12%)
Query: 64 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 123
++G G GK+ + V + G N I + E+ S GE K IR+ +R+A ++
Sbjct: 491 LFGPPGTGKTLLAKAVANESGANFISVKGPEIFSKWVGESEKAIREIFRKA----RQSAP 546
Query: 124 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 183
C + +++DA A + G V +++VN L +L GM E P+ +++
Sbjct: 547 CIIFFDEIDAIAPKRGRDLSSAVTDKVVNQLL---------TELDGM----EEPKDVVVI 593
Query: 184 TGNDFSTLYAP-LIRDGRMEKFYWAPTRED--RIGVCKGIFRNDNVADD----DIVKLVD 236
+ + P L+R GR+++ P ++ R+ + K R N+A+D ++ K +
Sbjct: 594 AATNRPDIIDPALLRPGRLDRVILVPVPDEKARLDIFKIHTRGMNLAEDVDLEELAKKTE 653
Query: 237 TFPGQSID 244
+ G I+
Sbjct: 654 GYTGADIE 661
>gi|257057411|ref|YP_003135243.1| AAA+ family ATPase [Saccharomonospora viridis DSM 43017]
gi|256587283|gb|ACU98416.1| AAA+ family ATPase [Saccharomonospora viridis DSM 43017]
Length = 747
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 67/293 (22%), Positives = 123/293 (41%), Gaps = 38/293 (12%)
Query: 10 MSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLV--VHITKNFMSLPNIKVPLILGIWGG 67
MS+ D ++ G LD+ D + A + ++ + +F L + P + I+G
Sbjct: 473 MSTTDTLATG--GITLDDVGDMADVKQALTESVLWPLRYPDSFERL-GVAPPRGVLIYGP 529
Query: 68 KGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLM 127
G GK+F + +N + EL GE + +R+ +R+AA+ +
Sbjct: 530 PGNGKTFLVRALAGTGALNVFSVKGAELMDKWVGESERAVRELFRKAAE----AAPSLVF 585
Query: 128 INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGND 187
++++DA A R G ++ V++++V A L + + E R ++V +
Sbjct: 586 LDEVDALAPRRGQSSDSGVSDRVVAALLTEL-------------DGVEPLRDVVVVGATN 632
Query: 188 FSTLYAP-LIRDGRMEKFYWAPT--REDRIGVCKGIFRNDNVADD-DIVKLVDTFPGQSI 243
L P L+R GR+E+ + P E R + + RN +ADD D+ L G S
Sbjct: 633 RPELVDPALLRPGRLERLIYVPPPDAEARGQILRAAARNTPLADDVDLDALAARLDGYSA 692
Query: 244 DFFGALRARVYDDEVRKWISGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLE 296
AL I + ++ +SL ++ A EQ + T+ L+
Sbjct: 693 ADCAAL------------IREAALAAMRESLAAAEVTARHLEQAQQTVRPSLD 733
>gi|256374585|ref|YP_003098245.1| Microtubule-severing ATPase [Actinosynnema mirum DSM 43827]
gi|255918888|gb|ACU34399.1| Microtubule-severing ATPase [Actinosynnema mirum DSM 43827]
Length = 734
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 61/264 (23%), Positives = 112/264 (42%), Gaps = 26/264 (9%)
Query: 10 MSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLV--VHITKNFMSLPNIKVPLILGIWGG 67
MS+ D + G LD+ D + A + + + +F L ++ P L ++G
Sbjct: 458 MSTSDTLRTG--GLTLDDVGDMAEVKQALTEAALWPLQYPDSFARL-GVEPPRGLLLYGP 514
Query: 68 KGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLM 127
G GK+F + +N + + EL GE + +R+ +R AA+ +
Sbjct: 515 PGCGKTFLVRALAGTGKLNVLSVKGAELMDKFVGESERAVRELFRRAAE----AAPALVF 570
Query: 128 INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGND 187
++++DA A R G ++ V +++V A L + + E R I++ +
Sbjct: 571 LDEVDALAPRRGQSSDSGVADRVVAALLTEL-------------DGVEPLRDVIVLGATN 617
Query: 188 FSTLYAP-LIRDGRMEKFYWAPT--REDRIGVCKGIFRNDNVADD-DIVKLVDTFPGQSI 243
L P L+R GR+E+ + P E R+ + + RN +A+D ++ L D G S
Sbjct: 618 RPELVDPALLRPGRLERLVYVPPPDAEARVEILRSASRNTPLAEDVELTALADDLDGYSA 677
Query: 244 DFFGALRARVYDDEVRKWISGVGV 267
AL +R+ +S V
Sbjct: 678 ADCAALIREAALTAMRESLSATAV 701
>gi|258568646|ref|XP_002585067.1| ribosome biogenesis ATPase RIX7 [Uncinocarpus reesii 1704]
gi|237906513|gb|EEP80914.1| ribosome biogenesis ATPase RIX7 [Uncinocarpus reesii 1704]
Length = 741
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 67/276 (24%), Positives = 121/276 (43%), Gaps = 33/276 (11%)
Query: 40 DKLVVHITK-NFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESG 98
D +V+ +T+ S ++ P + + G G GK+ A++G+ I +SA + SG
Sbjct: 188 DLIVLPMTRPQVYSSSKVQPPRGVLLHGPPGCGKTLIANAFAAELGVPFISISAPSIVSG 247
Query: 99 NAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNI 158
+GE K +R+ + EA K+ C + I+++DA + + Q + ++V L
Sbjct: 248 MSGESEKALREHFDEA----KRAAPCLVFIDEIDAITPKR-ESAQREMEKRIVAQLL--- 299
Query: 159 ADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKF--YWAPTREDRIGV 216
TC+ + + P V ++ N +L L R GR +K P+ R +
Sbjct: 300 ----TCMDDLALEKTDGKP-VIVLAATNRPDSLDPALRRGGRFDKEINLSVPSEPVREQI 354
Query: 217 CKGIFRNDNVADD-DIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISGVGVGSIGKSLV 275
+ + RN N+A+D D L PG F GA ++ +S G +I + L
Sbjct: 355 LRTLTRNMNLANDLDFALLAKRTPG----FVGA--------DLNDLVSTAGTAAIKRYLE 402
Query: 276 NSK---EAAPTFEQPRMTME-KLLEYGNMIVQEQEN 307
+ K + E+P + K+LE +I + +E
Sbjct: 403 HLKALGDEEMDIEEPHNNISPKILELRRLIKRARET 438
Score = 43.9 bits (102), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 49/200 (24%), Positives = 82/200 (41%), Gaps = 19/200 (9%)
Query: 56 IKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 115
I P + +WG G GK+ + V + N I + EL + GE + +RQ + A
Sbjct: 510 ISAPTGVLLWGPPGCGKTLLAKAVANESRANFISVKGPELLNKYVGESERAVRQVFVRAR 569
Query: 116 DIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEE 175
I C + ++LDA R T + ++VN L + + Q G+Y
Sbjct: 570 SSIP----CVIFFDELDALVPRRDDTLS-EASARVVNTLLTELDGLGSARQ--GIY---- 618
Query: 176 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCKGIFRNDNV-ADDDIV 232
+I N + ++R GR+E + P +R+ + + + RN V +I
Sbjct: 619 -----VIAATNRPDIIDPAMLRPGRLETLLFVNLPNETERVDILRTLVRNLTVEVTPEIE 673
Query: 233 KLVDTFPGQSIDFFGALRAR 252
LV + G S G+L R
Sbjct: 674 TLVRSCEGFSGADLGSLLRR 693
>gi|261403322|ref|YP_003247546.1| ATPase AAA [Methanocaldococcus vulcanius M7]
gi|261370315|gb|ACX73064.1| AAA family ATPase, CDC48 subfamily [Methanocaldococcus vulcanius
M7]
Length = 903
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 47/187 (25%), Positives = 87/187 (46%), Gaps = 22/187 (11%)
Query: 64 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 123
++G G GK+ + V + G N I + E+ S GE K IR+ +R+A ++
Sbjct: 491 LFGPPGTGKTLLAKAVANESGANFISVKGPEIFSKWVGESEKAIREIFRKA----RQSAP 546
Query: 124 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 183
C + +++DA A + G V +++VN L +L GM EE V +I
Sbjct: 547 CIIFFDEIDAIAPKRGRDLSSAVTDKVVNQLL---------TELDGM---EEPKDVIVIA 594
Query: 184 TGNDFSTLYAPLIRDGRMEKFYWAPTRED--RIGVCKGIFRNDNVADD----DIVKLVDT 237
N + + L+R GR+++ P ++ R+ + K R+ N+ +D ++ K +
Sbjct: 595 ATNRPDIIDSALLRPGRLDRVILVPVPDEKARLDILKIHTRSMNLDEDVNLEELAKKTEG 654
Query: 238 FPGQSID 244
+ G I+
Sbjct: 655 YTGADIE 661
>gi|344230035|gb|EGV61920.1| hypothetical protein CANTEDRAFT_107330 [Candida tenuis ATCC 10573]
Length = 835
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 61/228 (26%), Positives = 101/228 (44%), Gaps = 29/228 (12%)
Query: 56 IKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 115
I P + +WG G GK+ + V + N I + EL + GE + IRQ ++ A
Sbjct: 564 ITAPAGVLMWGPPGCGKTLLAKAVANESRANFISIKGPELLNKYVGESERAIRQVFQRA- 622
Query: 116 DIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEE 175
+ C + ++LDA R + + ++++VN L +L G+
Sbjct: 623 ---RASVPCIIFFDELDALVPRRDASLSES-SSRVVNTLL---------TELDGL----- 664
Query: 176 NPRVPIIVTG--NDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCKGIFRNDNVADDDI 231
N R I V G N + +IR GR++K + PT E+R+ + K + +++ D+
Sbjct: 665 NDRKGIFVIGATNRPDMIDPAMIRPGRLDKSLYIELPTEEERLDILKTLIKSNGTPIDES 724
Query: 232 VKLVDTFPGQSI-DFFGA-LRARVYDDEV----RKWISGVGVGSIGKS 273
V L D Q +F GA L + V + V RK+ VG + KS
Sbjct: 725 VNLKDIVYNQKCRNFSGADLSSLVREAGVIALKRKFFHHQKVGDLDKS 772
Score = 46.2 bits (108), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 41/161 (25%), Positives = 75/161 (46%), Gaps = 18/161 (11%)
Query: 64 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 123
++G G GK+ + ++ + I +SA + SG +GE K +R+ + +A +I
Sbjct: 233 LYGPPGCGKTTVANALAGELQVPFISISAPSVVSGMSGESEKKLREIFEDAKNIAP---- 288
Query: 124 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 183
C + I+++D+ + G Q + ++V A L+ + D T + G P+IV
Sbjct: 289 CLVFIDEIDSITPKRDGGAQREMERRIV-AQLLTLMDELTLDKTNGK---------PVIV 338
Query: 184 TG--NDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCKGI 220
G N +L L R GR ++ P+ E RI + K +
Sbjct: 339 IGATNRPDSLDPALRRAGRFDREICLNVPSEEQRISILKAM 379
>gi|333910254|ref|YP_004483987.1| ATPase AAA [Methanotorris igneus Kol 5]
gi|333750843|gb|AEF95922.1| AAA family ATPase, CDC48 subfamily [Methanotorris igneus Kol 5]
Length = 732
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 51/188 (27%), Positives = 86/188 (45%), Gaps = 19/188 (10%)
Query: 56 IKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 115
I+ P + ++G G GK+ + V + N I + E+ S GE K IR+ +R+A
Sbjct: 483 IRPPRGVLLFGPPGTGKTLLAKAVANESEANFISVKGPEIFSKWVGESEKAIREIFRKA- 541
Query: 116 DIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEE 175
++ C + +++D+ A R G V ++VN L +L G+ EE
Sbjct: 542 ---RQTAPCIIFFDEIDSIAPRRGSGHDSGVTEKVVNQLL---------TELDGL---EE 586
Query: 176 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCKGIFRNDNVADD-DIV 232
V +I N L L+R GR+++ AP ++ R+ + K R +ADD D+
Sbjct: 587 PKDVVVIAATNRPDILDPALLRPGRLDRIVLVPAPDKKARLAIFKVHTRKMPLADDVDLE 646
Query: 233 KLVDTFPG 240
KL + G
Sbjct: 647 KLAEKTEG 654
>gi|110669061|ref|YP_658872.1| AAA-type ATPase (transitional ATPase homolog) [Haloquadratum
walsbyi DSM 16790]
gi|385804649|ref|YP_005841049.1| AAA ATPase [Haloquadratum walsbyi C23]
gi|109626808|emb|CAJ53276.1| AAA-type ATPase (CDC48 subfamily) [Haloquadratum walsbyi DSM 16790]
gi|339730141|emb|CCC41459.1| AAA-type ATPase (CDC48 subfamily) [Haloquadratum walsbyi C23]
Length = 742
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 52/195 (26%), Positives = 85/195 (43%), Gaps = 22/195 (11%)
Query: 56 IKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 115
I P + ++G G GK+ + V + N I + +L S GE K IRQ +R+A
Sbjct: 493 IDAPKGVLLYGPPGTGKTLIAKAVANETNANFISVRGPQLLSKWVGESEKAIRQTFRKAR 552
Query: 116 DIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEE 175
+ + ++LD+ A GG T V+ ++VN L +L G+ EE
Sbjct: 553 QV----SPTVIFFDELDSLAPSRGGGTGNNVSERVVNQLL---------TELDGL---EE 596
Query: 176 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCKGIFRNDNVADD---- 229
N V ++ N + LIR GR ++ P E R + K RN +A D
Sbjct: 597 NGNVMVVAATNRPDMIDPALIRSGRFDRLVLIGQPGEEGREQILKIHTRNSPLAPDVSLR 656
Query: 230 DIVKLVDTFPGQSID 244
+I ++ D + G ++
Sbjct: 657 EIAEITDGYVGSDLE 671
>gi|225557765|gb|EEH06050.1| ribosome biogenesis ATPase RIX7 [Ajellomyces capsulatus G186AR]
Length = 751
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 58/213 (27%), Positives = 97/213 (45%), Gaps = 21/213 (9%)
Query: 40 DKLVVHITK-NFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESG 98
D LV+ +T+ S ++ P + + G G GK+ A++G+ I +SA + SG
Sbjct: 191 DLLVLPMTRPQVYSSSKVQPPRGVLLHGPPGCGKTMIANAFAAELGVPFIAISAPSIVSG 250
Query: 99 NAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNI 158
+GE K +R+ + EA KK C + I+++DA + + Q + ++V L
Sbjct: 251 MSGESEKALREHFDEA----KKVAPCLIFIDEIDAITPKR-ESAQREMEKRIVAQLL--- 302
Query: 159 ADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKF--YWAPTREDRIGV 216
TC+ + + P V ++ N +L A L R GR +K P+ R +
Sbjct: 303 ----TCMDDLALEKTDGKP-VIVLAATNRPDSLDAALRRGGRFDKEINLTVPSEPVREQI 357
Query: 217 CKGIFRNDNVADD-DIVKLVDTFPGQSIDFFGA 248
+ + R+ N+ADD D L PG F GA
Sbjct: 358 LRTLTRDMNLADDLDFKLLAKRTPG----FVGA 386
Score = 42.7 bits (99), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 47/200 (23%), Positives = 83/200 (41%), Gaps = 19/200 (9%)
Query: 56 IKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 115
I P + +WG G GK+ + V + N I + EL + GE + +RQ + A
Sbjct: 521 ITAPTGVLLWGPPGCGKTLLAKAVANESRANFISVKGPELLNKYVGESERAVRQVFVRAR 580
Query: 116 DIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEE 175
+ C + ++LDA R T + ++VN L + + Q G+Y
Sbjct: 581 SSVP----CVIFFDELDALVPRRDDTLS-EASARVVNTLLTELDGLGSARQ--GIY---- 629
Query: 176 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCKGIFRNDNVA-DDDIV 232
+I N + ++R GR+E + P+ ++R+ + + + R + DDI
Sbjct: 630 -----VIAATNRPDIIDPAMLRPGRLETLLFVNLPSADERVEILQTLLRKLPIEFSDDIE 684
Query: 233 KLVDTFPGQSIDFFGALRAR 252
L + G S G+L R
Sbjct: 685 GLARSCEGFSGADLGSLLRR 704
>gi|325000843|ref|ZP_08121955.1| ATPase [Pseudonocardia sp. P1]
Length = 420
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 45/178 (25%), Positives = 80/178 (44%), Gaps = 20/178 (11%)
Query: 55 NIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREA 114
++ P + ++G G GK+F + +N + EL GE + +R+ +R A
Sbjct: 188 GVEAPRGVLLYGPPGGGKTFLLRALAGSGDLNVFAVKGAELLDKYVGESERAVRELFRRA 247
Query: 115 ADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKE 174
A + + ++++DA A R GG+T V +++V A L + D T +
Sbjct: 248 A----EAAPALIFLDEVDALAPRRGGSTDAGVADRVVAALLTEL-DGATPL--------- 293
Query: 175 ENPRVPIIVTGNDFSTLYAP-LIRDGRMEK--FYWAPTREDRIGVCKGIFRNDNVADD 229
R ++V + L P L+R GR+E+ F P E R + + R+ +ADD
Sbjct: 294 ---REVVVVGATNRPELIDPALLRPGRLERLVFVPPPDAEARADILRASGRDVPLADD 348
>gi|240274120|gb|EER37638.1| ribosome biogenesis ATPase RIX7 [Ajellomyces capsulatus H143]
Length = 751
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 58/213 (27%), Positives = 97/213 (45%), Gaps = 21/213 (9%)
Query: 40 DKLVVHITK-NFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESG 98
D LV+ +T+ S ++ P + + G G GK+ A++G+ I +SA + SG
Sbjct: 191 DLLVLPMTRPQVYSSSKVQPPRGVLLHGPPGCGKTMIANAFAAELGVPFIAISAPSIVSG 250
Query: 99 NAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNI 158
+GE K +R+ + EA KK C + I+++DA + + Q + ++V L
Sbjct: 251 MSGESEKALREHFDEA----KKVAPCLIFIDEIDAITPKR-ESAQREMEKRIVAQLL--- 302
Query: 159 ADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKF--YWAPTREDRIGV 216
TC+ + + P V ++ N +L A L R GR +K P+ R +
Sbjct: 303 ----TCMDDLALEKTDGKP-VIVLAATNRPDSLDAALRRGGRFDKEINLTVPSEPVREQI 357
Query: 217 CKGIFRNDNVADD-DIVKLVDTFPGQSIDFFGA 248
+ + R+ N+ADD D L PG F GA
Sbjct: 358 LRTLTRDMNLADDLDFKLLAKRTPG----FVGA 386
Score = 42.4 bits (98), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 47/200 (23%), Positives = 83/200 (41%), Gaps = 19/200 (9%)
Query: 56 IKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 115
I P + +WG G GK+ + V + N I + EL + GE + +RQ + A
Sbjct: 521 ITAPTGVLLWGPPGCGKTLLAKAVANESRANFISVKGPELLNKYVGESERAVRQVFVRAR 580
Query: 116 DIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEE 175
+ C + ++LDA R T + ++VN L + + Q G+Y
Sbjct: 581 SSVP----CVIFFDELDALVPRRDDTLS-EASARVVNTLLTELDGLGSARQ--GIY---- 629
Query: 176 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCKGIFRNDNVA-DDDIV 232
+I N + ++R GR+E + P+ ++R+ + + + R + DDI
Sbjct: 630 -----VIAATNRPDIIDPAMLRPGRLETLLFVNLPSADERVEILQTLLRKLPIEFSDDIE 684
Query: 233 KLVDTFPGQSIDFFGALRAR 252
L + G S G+L R
Sbjct: 685 GLARSCEGFSGADLGSLLRR 704
>gi|148508161|gb|ABQ75952.1| AAA-type ATPase [uncultured haloarchaeon]
Length = 752
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 52/195 (26%), Positives = 85/195 (43%), Gaps = 22/195 (11%)
Query: 56 IKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 115
I P + ++G G GK+ + V + N I + +L S GE K IRQ +R+A
Sbjct: 503 IDAPKGVLLYGPPGTGKTLIAKAVANETNANFISVRGPQLLSKWVGESEKAIRQTFRKAR 562
Query: 116 DIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEE 175
+ + ++LD+ A GG T V+ ++VN L +L G+ EE
Sbjct: 563 QV----SPTVIFFDELDSLAPSRGGGTGNNVSERVVNQLL---------TELDGL---EE 606
Query: 176 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCKGIFRNDNVADD---- 229
N V ++ N + LIR GR ++ P E R + K RN +A D
Sbjct: 607 NGNVMVVAATNRPDMIDPALIRSGRFDRLVLIGQPGEEGREQILKIHTRNSPLAPDVSLR 666
Query: 230 DIVKLVDTFPGQSID 244
+I ++ D + G ++
Sbjct: 667 EIAEITDGYVGSDLE 681
>gi|325095497|gb|EGC48807.1| ribosome biogenesis ATPase RIX7 [Ajellomyces capsulatus H88]
Length = 751
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 58/213 (27%), Positives = 97/213 (45%), Gaps = 21/213 (9%)
Query: 40 DKLVVHITK-NFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESG 98
D LV+ +T+ S ++ P + + G G GK+ A++G+ I +SA + SG
Sbjct: 191 DLLVLPMTRPQVYSSSKVQPPRGVLLHGPPGCGKTMIANAFAAELGVPFIAISAPSIVSG 250
Query: 99 NAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNI 158
+GE K +R+ + EA KK C + I+++DA + + Q + ++V L
Sbjct: 251 MSGESEKALREHFDEA----KKVAPCLIFIDEIDAITPKR-ESAQREMEKRIVAQLL--- 302
Query: 159 ADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKF--YWAPTREDRIGV 216
TC+ + + P V ++ N +L A L R GR +K P+ R +
Sbjct: 303 ----TCMDDLALEKTDGKP-VIVLAATNRPDSLDAALRRGGRFDKEINLTVPSEPVREQI 357
Query: 217 CKGIFRNDNVADD-DIVKLVDTFPGQSIDFFGA 248
+ + R+ N+ADD D L PG F GA
Sbjct: 358 LRTLTRDMNLADDLDFKLLAKRTPG----FVGA 386
Score = 42.4 bits (98), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 47/200 (23%), Positives = 83/200 (41%), Gaps = 19/200 (9%)
Query: 56 IKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 115
I P + +WG G GK+ + V + N I + EL + GE + +RQ + A
Sbjct: 521 ITAPTGVLLWGPPGCGKTLLAKAVANESRANFISVKGPELLNKYVGESERAVRQVFVRAR 580
Query: 116 DIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEE 175
+ C + ++LDA R T + ++VN L + + Q G+Y
Sbjct: 581 SSVP----CVIFFDELDALVPRRDDTLS-EASARVVNTLLTELDGLGSARQ--GIY---- 629
Query: 176 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCKGIFRNDNVA-DDDIV 232
+I N + ++R GR+E + P+ ++R+ + + + R + DDI
Sbjct: 630 -----VIAATNRPDIIDPAMLRPGRLETLLFVNLPSADERVEILQTLLRKLPIEFSDDIE 684
Query: 233 KLVDTFPGQSIDFFGALRAR 252
L + G S G+L R
Sbjct: 685 GLARSCEGFSGADLGSLLRR 704
>gi|381159205|ref|ZP_09868438.1| AAA+ family ATPase [Thiorhodovibrio sp. 970]
gi|380880563|gb|EIC22654.1| AAA+ family ATPase [Thiorhodovibrio sp. 970]
Length = 490
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 55/234 (23%), Positives = 96/234 (41%), Gaps = 34/234 (14%)
Query: 54 PNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYRE 113
PN + P + + G +G GKS + V + G+ + + G L + GE + +R+ +
Sbjct: 258 PNAERPRGIMLLGVQGGGKSLAAKAVAGRFGVPLLRLDFGALYNKYIGETERNLRESLKT 317
Query: 114 AADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNK 173
A + C L +++++ G GG++ +++ L +A+ V L
Sbjct: 318 AEVMAP----CVLWLDEIEKGLA--GGSSDEGTGQRIIGTLLTWMAERKAAVFL------ 365
Query: 174 EENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW-----APTRED--RIGVCKGIFRNDNV 226
+ T ND L L+R GR ++ ++ A R + RI + K D+
Sbjct: 366 --------VATSNDIKQLPPELVRKGRFDEIFFVDLPDAEVRREIFRIHLAKRNLNPDDF 417
Query: 227 ADDDIVKLVDTFPGQSID--FFGALRARVYDDEVRKWISGVGVGSIGKSLVNSK 278
D + L D F G I+ AL A DD SGV +I L ++
Sbjct: 418 DLDQLAALSDGFSGAGIEQAVVSALYAARADDS-----SGVNTRAIAAELQRTQ 466
>gi|448395892|ref|ZP_21568986.1| proteasome-activating nucleotidase [Haloterrigena salina JCM 13891]
gi|445660473|gb|ELZ13269.1| proteasome-activating nucleotidase [Haloterrigena salina JCM 13891]
Length = 405
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 53/194 (27%), Positives = 84/194 (43%), Gaps = 20/194 (10%)
Query: 56 IKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 115
I+ P + ++G G GK+ + V + I M+ EL GE AKL+R +
Sbjct: 180 IEPPSGVLLYGPPGTGKTMLAKAVANETNATFIKMAGSELVHKFIGEGAKLVRDLF---- 235
Query: 116 DIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEE 175
D+ ++ + + I+++DA A + T T + V T+M + L M EE
Sbjct: 236 DVAREHEPAVIFIDEIDAIAAKR--TESKTSGDAEVQRTMMQL--------LSEMDGFEE 285
Query: 176 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPT--REDRIGVCKGIFRNDNVADD---- 229
+ II N F L ++R GR ++ P E R + K R NVADD
Sbjct: 286 RGEIRIIAATNRFDMLDRAILRPGRFDRLIEVPKPDAEGREIIFKIHTRGMNVADDVEFG 345
Query: 230 DIVKLVDTFPGQSI 243
D+ + V+ G I
Sbjct: 346 DLAEDVEEASGADI 359
>gi|159116259|ref|XP_001708351.1| 26S protease regulatory subunit 7 [Giardia lamblia ATCC 50803]
gi|157436462|gb|EDO80677.1| 26S protease regulatory subunit 7 [Giardia lamblia ATCC 50803]
Length = 401
Score = 52.0 bits (123), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 63/231 (27%), Positives = 103/231 (44%), Gaps = 25/231 (10%)
Query: 56 IKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 115
IK P + ++G G GKS C+ + +GI+ I +L GE A+L+R + A
Sbjct: 169 IKPPKSILLYGAPGTGKSLICKCLANSLGISYIKCVGSQLIRKYIGESARLVRDLFAYA- 227
Query: 116 DIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEE 175
K K C LMI+++DA A + + T N++ V+ L+ + ++ G +E
Sbjct: 228 ---KLKKPCLLMIDEVDAIATKR--SDDGTHNDREVDRALLQL-----LTEIDGFTGLDE 277
Query: 176 NPRVPIIVTGNDFSTLYAPLIRDGR----MEKFYWAPT-REDRIGV-CKGIFRNDNVADD 229
+ + I+ N L L+R GR +E PT R + + + KG+ ++V
Sbjct: 278 S--IKIVFCTNRPEALDPALMRPGRCDVKIEIRLPDPTGRYEILKIHSKGLSLGEDVDFA 335
Query: 230 DIVKLVDTFPGQSIDF------FGALRARVYDDEVRKWISGVGVGSIGKSL 274
IVK D F G + GALRA + ++ V V KS+
Sbjct: 336 GIVKSTDGFNGADLRNVITEAGLGALRAERGEIHQEDLLAAVAVIRSNKSI 386
>gi|284164772|ref|YP_003403051.1| 26S proteasome subunit P45 family [Haloterrigena turkmenica DSM
5511]
gi|284014427|gb|ADB60378.1| 26S proteasome subunit P45 family [Haloterrigena turkmenica DSM
5511]
Length = 405
Score = 51.6 bits (122), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 47/168 (27%), Positives = 73/168 (43%), Gaps = 16/168 (9%)
Query: 64 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 123
++G G GK+ + V + I M+ EL GE AKL+R + D+ ++ +
Sbjct: 188 LYGPPGTGKTMLAKAVANETNATFIKMAGSELVHKFIGEGAKLVRDLF----DVAREHEP 243
Query: 124 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 183
+ I+++DA A + T T + V T+M + L M EE + II
Sbjct: 244 AVIFIDEIDAIAAKR--TESKTSGDAEVQRTMMQL--------LSEMDGFEERGEIRIIA 293
Query: 184 TGNDFSTLYAPLIRDGRMEKFYWAPT--REDRIGVCKGIFRNDNVADD 229
N F L ++R GR ++ P E R + K R NVADD
Sbjct: 294 ATNRFDMLDRAILRPGRFDRLIEVPKPDAEGREIIFKIHTRGMNVADD 341
>gi|118393771|ref|XP_001029293.1| ATPase, AAA family protein [Tetrahymena thermophila]
gi|89283465|gb|EAR81630.1| ATPase, AAA family protein [Tetrahymena thermophila SB210]
Length = 702
Score = 51.6 bits (122), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 42/177 (23%), Positives = 78/177 (44%), Gaps = 18/177 (10%)
Query: 55 NIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREA 114
NI P + ++G G GK+ + V N I + EL + GE K +RQ + A
Sbjct: 456 NIASPAGVLLYGPPGCGKTLLAKAVANASKANFISVKGPELLNKYVGESEKSVRQVFSRA 515
Query: 115 ADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKE 174
K C + ++LDA + GG + V ++VN+ L +L G ++
Sbjct: 516 ----KASAPCIIFFDELDALVPKRGGDSTNQVTERVVNSLL---------AELDGFEGRK 562
Query: 175 ENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCKGIFRNDNVADD 229
+ V +I N + ++R GR++K + PT ++++ + + + R + D
Sbjct: 563 Q---VYVIAATNRPDIIDPAILRGGRLDKLLYVPLPTNDEKVSILEALIRKTPLEQD 616
>gi|290976655|ref|XP_002671055.1| predicted protein [Naegleria gruberi]
gi|284084620|gb|EFC38311.1| predicted protein [Naegleria gruberi]
Length = 883
Score = 51.6 bits (122), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 44/183 (24%), Positives = 76/183 (41%), Gaps = 22/183 (12%)
Query: 64 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 123
++G G GK+ + + G N I + EL + GE + +RQ + AA
Sbjct: 591 LYGPPGCGKTLLAKAISNDSGANFISIKGPELLNKYVGESERAVRQVFSRAA----ASSP 646
Query: 124 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 183
C + +++DA + + + ++VN L M E V +I
Sbjct: 647 CVIFFDEMDALCPKRDNESSSQSSERVVNQLLT------------AMDGLESRGMVFVIA 694
Query: 184 TGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCKGIFRNDNVADD----DIVKLVDT 237
N + + ++R GR++K + P ++RI V K I R +A D +I KL +
Sbjct: 695 ATNRPDMIDSAMLRPGRLDKLLYVKLPNEQERISVLKTIARKTPLASDVNLEEIAKLCEN 754
Query: 238 FPG 240
F G
Sbjct: 755 FSG 757
>gi|225717030|gb|ACO14361.1| 26S protease regulatory subunit S10B [Esox lucius]
Length = 389
Score = 51.6 bits (122), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 88/186 (47%), Gaps = 20/186 (10%)
Query: 64 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 123
++G G GK+ V ++M N + + + + GE A+LIR+ + A D +
Sbjct: 172 LYGPPGTGKTLLARAVASQMDCNFLKVVSSSIVDKYIGESARLIREMFNYARD----HQP 227
Query: 124 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 183
C + ++++DA GR ++ T ++ + TLM + + Q+ G + RV +I+
Sbjct: 228 CIIFMDEIDAIGGRR--FSEGTSADREIQGTLMELLN-----QMDGF---DTLHRVKMIM 277
Query: 184 TGNDFSTLYAPLIRDGRMEK--FYWAPTREDRIGVCK----GIFRNDNVADDDIVKLVDT 237
N TL L+R GR+++ P + R+ + K I ++ + + IVKL D
Sbjct: 278 ATNRPDTLDPALLRPGRLDRKIHVELPNEQARLDILKIHSGPITKHGEIDYEAIVKLSDG 337
Query: 238 FPGQSI 243
F G +
Sbjct: 338 FNGADL 343
>gi|119490332|ref|ZP_01622810.1| AAA ATPase, central region [Lyngbya sp. PCC 8106]
gi|119453991|gb|EAW35145.1| AAA ATPase, central region [Lyngbya sp. PCC 8106]
Length = 519
Score = 51.6 bits (122), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 49/201 (24%), Positives = 82/201 (40%), Gaps = 28/201 (13%)
Query: 53 LPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYR 112
LPN K L+ GI +G GKS + + A+ + + + G L G GE +RQ +
Sbjct: 259 LPNPKGVLLAGI---QGTGKSLSAKTIAAEWKLPLLRLDVGRLFGGIVGESESRVRQVIK 315
Query: 113 EAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYN 172
A + C L I+++D + +N++ + +A
Sbjct: 316 LAEAV----SPCVLWIDEIDKAFSQNYSRGDSGTSNRVFGTFITWLA------------- 358
Query: 173 KEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW-----APTREDRIGVCKGIFRNDNVA 227
E+ V I+ T N+ L A LIR GR+++ +W P RE V R +
Sbjct: 359 -EKTSPVFIVATANNVEALPAELIRKGRLDEIFWIGLPSQPEREQIFQVHLHRLRPERFK 417
Query: 228 DDDIVKLVDTFPGQSIDFFGA 248
+++ +S+DF GA
Sbjct: 418 NNEFD--FHLLASRSLDFSGA 436
>gi|356517889|ref|XP_003527618.1| PREDICTED: 26S protease regulatory subunit 10B homolog A-like
[Glycine max]
Length = 387
Score = 51.6 bits (122), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 44/194 (22%), Positives = 94/194 (48%), Gaps = 20/194 (10%)
Query: 56 IKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 115
+K+P + ++G G GK+ + + + + + + + + GE A+LIR+ ++ A
Sbjct: 167 MKLPKGVLLYGPPGTGKTLLAKAISCNVDAKFLKVVSSTIIHKSIGESARLIREMFKYA- 225
Query: 116 DIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEE 175
+ + C + ++++DA AGR + + ++ + TL + + QL G+ + E
Sbjct: 226 ---RNHQPCIIFMDEIDAIAGRRSSNRKGS--DREIQRTLKELLN-----QLDGLNHLE- 274
Query: 176 NPRVPIIVTGNDFSTLYAPLIRDGRMEKF--YWAPTREDRIGVCK----GIFRNDNVADD 229
+V II+ N L L+R GR+++ P R+ R+ + K G+ + + +
Sbjct: 275 --KVKIIMATNRLDVLDPALLRHGRIDRKIEITLPNRKSRMEIFKIHAEGVTKRGEIDYE 332
Query: 230 DIVKLVDTFPGQSI 243
+VKL + F G +
Sbjct: 333 AVVKLAEGFNGADL 346
>gi|121702141|ref|XP_001269335.1| AAA family ATPase/60S ribosome export protein Rix7, putative
[Aspergillus clavatus NRRL 1]
gi|119397478|gb|EAW07909.1| AAA family ATPase/60S ribosome export protein Rix7, putative
[Aspergillus clavatus NRRL 1]
Length = 738
Score = 51.6 bits (122), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 58/214 (27%), Positives = 98/214 (45%), Gaps = 23/214 (10%)
Query: 40 DKLVVHITKN--FMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELES 97
D L++ +T+ +MS N++ P + + G G GK+ A++GI I +SA + S
Sbjct: 186 DLLILPMTRPQVYMS-SNVQPPRGVLLHGPPGCGKTMIANAFAAELGIPFIPISAPSIVS 244
Query: 98 GNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMN 157
G +GE K +R+ + EA K+ C + I+++DA + + Q + ++V L
Sbjct: 245 GMSGESEKALREHFEEA----KRIAPCLIFIDEIDAITPKR-ESAQREMEKRIVAQLL-- 297
Query: 158 IADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKF--YWAPTREDRIG 215
TC+ + + P V ++ N +L A L R GR +K P+ R
Sbjct: 298 -----TCMDDLALDKTDGKP-VIVLAATNRPDSLDAALRRGGRFDKEINMTVPSEPVREQ 351
Query: 216 VCKGIFRNDNVADD-DIVKLVDTFPGQSIDFFGA 248
+ + + R +ADD D L PG F GA
Sbjct: 352 ILRALTRKMRLADDLDFKTLAKRTPG----FVGA 381
>gi|431794110|ref|YP_007221015.1| ATP-dependent Zn protease [Desulfitobacterium dichloroeliminans LMG
P-21439]
gi|430784336|gb|AGA69619.1| ATP-dependent Zn protease [Desulfitobacterium dichloroeliminans LMG
P-21439]
Length = 493
Score = 51.6 bits (122), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 37/146 (25%), Positives = 69/146 (47%), Gaps = 13/146 (8%)
Query: 88 IMMSAGELESGNAGEPAKLIRQRYREAADIIKKGK--MCCLMINDLDAGAGRMGGTTQYT 145
+ +S E AG A+ +R+ +R+A D+ KK K + I+++D + G +
Sbjct: 127 LAISGSEFVEMYAGVGAERVRRLFRKARDLAKKEKKDRAIIFIDEMDILGAKRGSNVSHH 186
Query: 146 VNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFY 205
+Q +N L V++ G+ ++E+ P++ I+ N L L+R GR ++
Sbjct: 187 EYDQTLNQLL---------VEMDGLGSEEQGPQILIVAATNRAEALDPALLRPGRFDRQV 237
Query: 206 WA--PTREDRIGVCKGIFRNDNVADD 229
P RE R+ + K +N +A D
Sbjct: 238 KVDLPDREGRLAILKIHAKNKPLATD 263
>gi|50553670|ref|XP_504246.1| YALI0E21868p [Yarrowia lipolytica]
gi|49650115|emb|CAG79841.1| YALI0E21868p [Yarrowia lipolytica CLIB122]
Length = 410
Score = 51.6 bits (122), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 50/194 (25%), Positives = 90/194 (46%), Gaps = 20/194 (10%)
Query: 56 IKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 115
IK P + ++G G GK+ + V A +G N I A + GE A+LIR+ + A
Sbjct: 185 IKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASAIVDKYIGESARLIREMFGYA- 243
Query: 116 DIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEE 175
K+ + C + ++++DA GR ++ T +++ + TLM + + G
Sbjct: 244 ---KEHEPCIIFMDEVDAIGGRR--FSEGTSSDREIQRTLMELLNQMDGFDYLG------ 292
Query: 176 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRED--RIGVCK----GIFRNDNVADD 229
+ +I+ N TL L+R GR+++ P + R+ V K G+ + + +
Sbjct: 293 --KTKVIMATNRPDTLDPALLRAGRLDRKIEIPLPNEAGRLEVFKIHAAGVQKQGEIDYE 350
Query: 230 DIVKLVDTFPGQSI 243
+VK+ D F G I
Sbjct: 351 ALVKMSDGFNGADI 364
>gi|452846664|gb|EME48596.1| hypothetical protein DOTSEDRAFT_49041 [Dothistroma septosporum
NZE10]
Length = 710
Score = 51.2 bits (121), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 58/215 (26%), Positives = 95/215 (44%), Gaps = 24/215 (11%)
Query: 39 MDKLVVHITKNFMSLPNIKVPLILGIW--GGKGQGKSFQCELVFAKMGINPIMMSAGELE 96
M++L+V + +PL G+ G G GK+ A++G+ + + +
Sbjct: 156 MNRLIVMPIGCYEDYHAASLPLPKGVLLHGPPGCGKTMLARAYAAELGVPFVEILGPSIV 215
Query: 97 SGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLM 156
SG +GE K +R R+ EA KK C L I+++DA A + T+Q + ++V L+
Sbjct: 216 SGMSGESEKGVRDRFEEA----KKNAPCLLFIDEIDAIAPKR-ETSQSQMEKRIVAQLLV 270
Query: 157 NIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRM--EKFYWAPTREDRI 214
++ + NKE P V ++ N +L L R GR E P + R
Sbjct: 271 SMDE----------INKEGGPPVIVLAATNRPDSLDPALRRGGRFGTEININVPNEQVRQ 320
Query: 215 GVCKGIFRNDNVADD-DIVKLVDTFPGQSIDFFGA 248
+ + R+ +A D D+VKL G F GA
Sbjct: 321 SILETQTRSMTLAADVDLVKLAKDTAG----FVGA 351
>gi|198285437|gb|ACH85257.1| proteasome (prosome, macropain) 26S subunit, ATPase, 6 [Salmo
salar]
Length = 387
Score = 51.2 bits (121), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 88/186 (47%), Gaps = 20/186 (10%)
Query: 64 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 123
++G G GK+ V ++M N + + + + GE A+LIR+ + A D +
Sbjct: 170 LYGPPGTGKTLLARAVASQMDCNFLKVVSSSIVDKYIGESARLIREMFNYARD----HQP 225
Query: 124 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 183
C + ++++DA GR ++ T ++ + TLM + + Q+ G + RV +I+
Sbjct: 226 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGF---DTLHRVKMIM 275
Query: 184 TGNDFSTLYAPLIRDGRMEK--FYWAPTREDRIGVCK----GIFRNDNVADDDIVKLVDT 237
N TL L+R GR+++ P + R+ + K I ++ + + IVKL D
Sbjct: 276 ATNRPDTLDPALLRPGRLDRKIHIELPNEQARLDILKIHSGPITKHGEIDYEAIVKLSDG 335
Query: 238 FPGQSI 243
F G +
Sbjct: 336 FNGADL 341
>gi|313127103|ref|YP_004037373.1| proteasome-activating nucleotidase [Halogeometricum borinquense DSM
11551]
gi|448288429|ref|ZP_21479628.1| proteasome-activating nucleotidase [Halogeometricum borinquense DSM
11551]
gi|312293468|gb|ADQ67928.1| Proteasome-activating nucleotidase [Halogeometricum borinquense DSM
11551]
gi|445569580|gb|ELY24152.1| proteasome-activating nucleotidase [Halogeometricum borinquense DSM
11551]
Length = 405
Score = 51.2 bits (121), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 48/176 (27%), Positives = 79/176 (44%), Gaps = 16/176 (9%)
Query: 56 IKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 115
I+ P + ++G G GK+ + V + + I M+ EL GE AKL+R +
Sbjct: 180 IQPPSGVLLYGPPGTGKTMLAKAVANQTNASFIKMAGSELVHKFIGEGAKLVRDLF---- 235
Query: 116 DIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEE 175
++ ++ + + I+++DA A + T T + V T+M + L M EE
Sbjct: 236 EVARENEPAVIFIDEIDAIASKR--TDSKTSGDAEVQRTMMQL--------LSEMDGFEE 285
Query: 176 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPT--REDRIGVCKGIFRNDNVADD 229
+ II N F L ++R GR ++ P E R + + RN NVADD
Sbjct: 286 RGDIRIIAATNRFDMLDPAILRPGRFDRLIEVPKPDVEGREIIFQIHTRNMNVADD 341
>gi|213512535|ref|NP_001134354.1| 26S protease regulatory subunit S10B [Salmo salar]
gi|209732644|gb|ACI67191.1| 26S protease regulatory subunit S10B [Salmo salar]
Length = 389
Score = 51.2 bits (121), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 88/186 (47%), Gaps = 20/186 (10%)
Query: 64 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 123
++G G GK+ V ++M N + + + + GE A+LIR+ + A D +
Sbjct: 172 LYGPPGTGKTLLARAVASQMDCNFLKVVSSSIVDKYIGESARLIREMFNYARD----HQP 227
Query: 124 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 183
C + ++++DA GR ++ T ++ + TLM + + Q+ G + RV +I+
Sbjct: 228 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGF---DTLHRVKMIM 277
Query: 184 TGNDFSTLYAPLIRDGRMEK--FYWAPTREDRIGVCK----GIFRNDNVADDDIVKLVDT 237
N TL L+R GR+++ P + R+ + K I ++ + + IVKL D
Sbjct: 278 ATNRPDTLDPALLRPGRLDRKIHIELPNEQARLDILKIHSGPITKHGEIDYEAIVKLSDG 337
Query: 238 FPGQSI 243
F G +
Sbjct: 338 FNGADL 343
>gi|448397657|ref|ZP_21569690.1| proteasome-activating nucleotidase [Haloterrigena limicola JCM
13563]
gi|445672756|gb|ELZ25327.1| proteasome-activating nucleotidase [Haloterrigena limicola JCM
13563]
Length = 405
Score = 51.2 bits (121), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 46/168 (27%), Positives = 74/168 (44%), Gaps = 16/168 (9%)
Query: 64 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 123
++G G GK+ + V + I M+ EL GE AKL+R + D+ ++ +
Sbjct: 188 LYGPPGTGKTMLAKAVANQTDATFIKMAGSELVHKFIGEGAKLVRDLF----DVAREHEP 243
Query: 124 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 183
+ I+++DA A + T T + V T+M + L M EE + II
Sbjct: 244 AVIFIDEIDAIAAKR--TESKTSGDAEVQRTMMQL--------LSEMDGFEERGEIRIIA 293
Query: 184 TGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCKGIFRNDNVADD 229
N F L ++R GR ++ P +E R + + R NVADD
Sbjct: 294 ATNRFDMLDRAILRPGRFDRLIEVPKPNQEGREIIFEIHTRGMNVADD 341
>gi|88602110|ref|YP_502288.1| ATPase AAA [Methanospirillum hungatei JF-1]
gi|88187572|gb|ABD40569.1| AAA family ATPase, CDC48 subfamily [Methanospirillum hungatei JF-1]
Length = 801
Score = 51.2 bits (121), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 60/229 (26%), Positives = 98/229 (42%), Gaps = 27/229 (11%)
Query: 29 IDGLYIAPAFMDKLV---VHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGI 85
++GL ++K++ VH F L IK P + ++G G GK+ + V AK +
Sbjct: 456 VEGLDAEKHEIEKIIEWPVHRRDAFEKL-KIKPPKGILLFGPPGTGKTLLAKAVAAKSRM 514
Query: 86 NPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYT 145
N I + EL S GE K +R+ +R+A ++ + +++DA + G Q
Sbjct: 515 NFISVKGPELLSKWVGESEKQVREAFRKA----RQSAPSIIFFDEIDALVQQRG---QQH 567
Query: 146 VNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFY 205
N+++ + L I L M EE V I+ N L L+R GR+EK
Sbjct: 568 TNSRVGESVLSQI--------LTEMDGVEELSGVVIMAATNRPDLLDPALLRPGRLEKHI 619
Query: 206 W--APTREDRIGVCK------GIFRNDNVADDDIVKLVDTFPGQSIDFF 246
+ P R + K G ++N+ D I + + F G I F
Sbjct: 620 YIKPPNLNGRKAILKIYLRDLGTLLDENIDYDAIAREMRYFVGADIHAF 668
>gi|448419856|ref|ZP_21580700.1| proteasome-activating nucleotidase [Halosarcina pallida JCM 14848]
gi|445674770|gb|ELZ27307.1| proteasome-activating nucleotidase [Halosarcina pallida JCM 14848]
Length = 405
Score = 51.2 bits (121), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 50/184 (27%), Positives = 82/184 (44%), Gaps = 17/184 (9%)
Query: 56 IKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 115
I+ P + ++G G GK+ + V + I M+ EL GE AKL+R +
Sbjct: 180 IQPPSGVLLYGPPGTGKTMLAKAVANQTNATFIKMAGSELVHKFIGEGAKLVRDLF---- 235
Query: 116 DIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEE 175
++ ++ + L I+++DA A + T T + V T+M + L M +E
Sbjct: 236 EVARENEPAVLFIDEIDAIASKR--TDSKTSGDAEVQRTMMQL--------LSEMDGFDE 285
Query: 176 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCKGIFRNDNVADD-DIV 232
+ II N F L ++R GR ++ P E R + + RN NVADD D
Sbjct: 286 RGDIRIIAATNRFDMLDPAILRPGRFDRLIEVPKPNMEGREIIFQIHTRNMNVADDVDFA 345
Query: 233 KLVD 236
+L +
Sbjct: 346 RLAE 349
>gi|425774370|gb|EKV12678.1| AAA family ATPase/60S ribosome export protein Rix7, putative
[Penicillium digitatum PHI26]
gi|425776880|gb|EKV15078.1| AAA family ATPase/60S ribosome export protein Rix7, putative
[Penicillium digitatum Pd1]
Length = 729
Score = 51.2 bits (121), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 52/197 (26%), Positives = 89/197 (45%), Gaps = 20/197 (10%)
Query: 55 NIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREA 114
N++ P + + G G GK+ A++G+ I +SA + SG +GE K +R+ + EA
Sbjct: 192 NVQPPRGVLLHGPPGCGKTLIANAFAAELGVPFISISAPSVVSGMSGESEKALREYFEEA 251
Query: 115 ADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKE 174
K+ C + I+++DA + + Q + ++V L TC+ + +
Sbjct: 252 ----KRLAPCLIFIDEIDAITPKR-ESAQREMEKRIVAQLL-------TCMDEIALEKTD 299
Query: 175 ENPRVPIIVTGNDFSTLYAPLIRDGRMEKFY--WAPTREDRIGVCKGIFRNDNVADD-DI 231
P V ++ N +L A L R GR +K P+ R + + + R +ADD D+
Sbjct: 300 GKP-VIVLAATNRPDSLDAALRRGGRFDKEINMTVPSEPVREQILRALTRKMRLADDIDL 358
Query: 232 VKLVDTFPGQSIDFFGA 248
L PG F GA
Sbjct: 359 KTLAKRTPG----FVGA 371
Score = 45.1 bits (105), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 49/200 (24%), Positives = 84/200 (42%), Gaps = 19/200 (9%)
Query: 56 IKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 115
I P + +WG G GK+ + V + N I + EL + GE + +RQ + A
Sbjct: 500 ITAPTGVLLWGPPGCGKTLLAKAVANESRANFISVKGPELLNKFVGESERAVRQVFVRAR 559
Query: 116 DIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEE 175
+ C + ++LDA R T + ++VN L + + Q G+Y
Sbjct: 560 SSVP----CVIFFDELDALVPRRDDTLS-EASARVVNTLLTELDGLGSSRQ--GIY---- 608
Query: 176 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCKGIFRNDNVA-DDDIV 232
+I N + ++R GR+E + PT +R+ + + + RN V +D+
Sbjct: 609 -----VIAATNRPDIIDPAMLRPGRLETLLFVNLPTPLERVEILQTLLRNLAVEFSEDLR 663
Query: 233 KLVDTFPGQSIDFFGALRAR 252
KL + G S G+L R
Sbjct: 664 KLAEECEGFSGADLGSLLRR 683
>gi|402590003|gb|EJW83934.1| hypothetical protein WUBG_05154 [Wuchereria bancrofti]
Length = 397
Score = 51.2 bits (121), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 54/218 (24%), Positives = 100/218 (45%), Gaps = 29/218 (13%)
Query: 64 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 123
++G G GK+ V +++ N + + + + GE A++IR+ + A D +
Sbjct: 180 LYGPPGTGKTLLARAVASQLDCNFLKVVSSAIVDKYIGESARMIREMFNYARD----HQP 235
Query: 124 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 183
C + ++++DA GR ++ T ++ + TLM + + Q+ G + RV II+
Sbjct: 236 CIVFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGF---DSLGRVKIIM 285
Query: 184 TGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCK----GIFRNDNVADDDIVKLVDT 237
N TL L+R GR+++ P + R+ V K I ++ ++ + +VKL D
Sbjct: 286 ATNRPDTLDPALLRPGRLDRKIEIGLPNEQSRLEVLKIHASKITKHGDIDYEAVVKLSDG 345
Query: 238 FPGQSID-------FFG--ALRARVYDDEVRKWISGVG 266
F G + F A R V D++ K + VG
Sbjct: 346 FSGADLRNVCTEAGLFAIRAEREYVIDEDFMKAVRKVG 383
>gi|312068505|ref|XP_003137245.1| proteasome 26S subunit [Loa loa]
gi|307767590|gb|EFO26824.1| 26S protease regulatory subunit 10B [Loa loa]
Length = 397
Score = 51.2 bits (121), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 54/218 (24%), Positives = 100/218 (45%), Gaps = 29/218 (13%)
Query: 64 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 123
++G G GK+ V +++ N + + + + GE A++IR+ + A D +
Sbjct: 180 LYGPPGTGKTLLARAVASQLDCNFLKVVSSAIVDKYIGESARMIREMFNYARD----HQP 235
Query: 124 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 183
C + ++++DA GR ++ T ++ + TLM + + Q+ G + RV II+
Sbjct: 236 CIVFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGF---DSLGRVKIIM 285
Query: 184 TGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCK----GIFRNDNVADDDIVKLVDT 237
N TL L+R GR+++ P + R+ V K I ++ ++ + +VKL D
Sbjct: 286 ATNRPDTLDPALLRPGRLDRKIEIGLPNEQSRLEVLKIHASKITKHGDIDYEAVVKLSDG 345
Query: 238 FPGQSID-------FFG--ALRARVYDDEVRKWISGVG 266
F G + F A R V D++ K + VG
Sbjct: 346 FSGADLRNVCTEAGLFAIRAEREYVIDEDFMKAVRKVG 383
>gi|302389778|ref|YP_003825599.1| Vesicle-fusing ATPase [Thermosediminibacter oceani DSM 16646]
gi|302200406|gb|ADL07976.1| Vesicle-fusing ATPase [Thermosediminibacter oceani DSM 16646]
Length = 495
Score = 51.2 bits (121), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 45/188 (23%), Positives = 85/188 (45%), Gaps = 15/188 (7%)
Query: 48 KNFMSLPNIKVPLILGIW--GGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAK 105
KN+ + + + + GI G G GK+ + + + I S E AG A+
Sbjct: 83 KNYDEVKQMGIRPLRGILLTGAPGTGKTLLAKAASSYIDSAFISASGSEFIEMYAGVGAQ 142
Query: 106 LIRQRYREAADIIKKG--KMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPT 163
+RQ ++ A D+ +K K C + I++++ AG G T + +Q +N L
Sbjct: 143 RVRQLFKTARDLARKNSKKHCVIFIDEIEVIAGVRGKNTSHMEYDQTLNQLL-------- 194
Query: 164 CVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCKGIF 221
V++ G+ K+++ + +I N L ++R GR ++ P +E R + K
Sbjct: 195 -VEMDGLSAKDDDVNILVIGATNRPDILDPAIMRPGRFDRIVKVDLPDKEGRYQILKLHT 253
Query: 222 RNDNVADD 229
++ +ADD
Sbjct: 254 KDKPLADD 261
>gi|239609886|gb|EEQ86873.1| ribosome biogenesis ATPase RIX7 [Ajellomyces dermatitidis ER-3]
Length = 751
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 56/213 (26%), Positives = 97/213 (45%), Gaps = 21/213 (9%)
Query: 40 DKLVVHITK-NFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESG 98
D +V+ +T+ S ++ P + + G G GK+ A++G+ I +SA + SG
Sbjct: 191 DLIVLPMTRPQVYSSSKVQPPRGVLLHGPPGCGKTMIANAFAAELGVPFIAISAPSIVSG 250
Query: 99 NAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNI 158
+GE K +R+ + EA KK C + I+++DA + + Q + ++V L
Sbjct: 251 MSGESEKALREHFDEA----KKVAPCLIFIDEIDAITPKR-ESAQREMEKRIVAQLL--- 302
Query: 159 ADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKF--YWAPTREDRIGV 216
TC+ + + P V ++ N +L A L R GR +K P+ R +
Sbjct: 303 ----TCMDDLALEKTDGKP-VIVLAATNRPDSLDAALRRGGRFDKEINLTVPSEPVREQI 357
Query: 217 CKGIFRNDNVADD-DIVKLVDTFPGQSIDFFGA 248
+ + ++ N+ADD D L PG F GA
Sbjct: 358 LRALTKDMNLADDLDFKLLAKRTPG----FVGA 386
Score = 45.1 bits (105), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 48/200 (24%), Positives = 84/200 (42%), Gaps = 19/200 (9%)
Query: 56 IKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 115
I P + +WG G GK+ + V + N I + EL + GE + +RQ + A
Sbjct: 521 ITAPTGVLLWGPPGCGKTLLAKAVANESRANFISVKGPELLNKYVGESERAVRQVFVRAR 580
Query: 116 DIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEE 175
+ C + ++LDA R T + ++VN L + + Q G+Y
Sbjct: 581 SSVP----CVIFFDELDALVPRRDDTLS-EASARVVNTLLTELDGLGSARQ--GIY---- 629
Query: 176 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCKGIFRNDNVA-DDDIV 232
+I N + ++R GR+E + PT ++R+ + + + R + DDI
Sbjct: 630 -----VIAATNRPDIIDPAMLRPGRLETLLFVNLPTADERVEILQTLLRKMPIEFSDDIK 684
Query: 233 KLVDTFPGQSIDFFGALRAR 252
+L + G S G+L R
Sbjct: 685 ELARSCEGFSGADLGSLLRR 704
>gi|195160265|ref|XP_002020996.1| GL25072 [Drosophila persimilis]
gi|198464587|ref|XP_001353280.2| GA20215 [Drosophila pseudoobscura pseudoobscura]
gi|194118109|gb|EDW40152.1| GL25072 [Drosophila persimilis]
gi|198149786|gb|EAL30783.2| GA20215 [Drosophila pseudoobscura pseudoobscura]
Length = 389
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 87/186 (46%), Gaps = 20/186 (10%)
Query: 64 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 123
++G G GK+ + ++M N + + + + GE A+LIR+ + A D +
Sbjct: 172 LYGPPGTGKTLMARAIASQMDANFLKVVSSAIVDKYIGESARLIREMFSYARD----HQP 227
Query: 124 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 183
C + ++++DA GR ++ + ++ + TLM + + Q+ G + +V +I+
Sbjct: 228 CIIFMDEIDAIGGRR--FSEGSSADREIQRTLMELLN-----QMDGF---DSLGQVKMIM 277
Query: 184 TGNDFSTLYAPLIRDGRMEKFYWAP-----TREDRIGVCKGIFRNDNVAD-DDIVKLVDT 237
N TL L+R GR+++ P R D + + G V D + IVKL DT
Sbjct: 278 ATNRPDTLDPALLRPGRLDRKLEIPLPNEVARMDILKIHAGPLSKQGVIDYEAIVKLSDT 337
Query: 238 FPGQSI 243
F G +
Sbjct: 338 FNGADL 343
>gi|170586148|ref|XP_001897842.1| Probable 26S protease regulatory subunit S10B [Brugia malayi]
gi|158594737|gb|EDP33319.1| Probable 26S protease regulatory subunit S10B, putative [Brugia
malayi]
Length = 467
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 54/218 (24%), Positives = 100/218 (45%), Gaps = 29/218 (13%)
Query: 64 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 123
++G G GK+ V +++ N + + + + GE A++IR+ + A D +
Sbjct: 180 LYGPPGTGKTLLARAVASQLDCNFLKVVSSAIVDKYIGESARMIREMFNYARD----HQP 235
Query: 124 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 183
C + ++++DA GR ++ T ++ + TLM + + Q+ G + RV II+
Sbjct: 236 CIVFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGF---DSLGRVKIIM 285
Query: 184 TGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCK----GIFRNDNVADDDIVKLVDT 237
N TL L+R GR+++ P + R+ V K I ++ ++ + +VKL D
Sbjct: 286 ATNRPDTLDPALLRPGRLDRKIEIGLPNEQSRLEVLKIHASKITKHGDIDYEAVVKLSDG 345
Query: 238 FPGQSID-------FFG--ALRARVYDDEVRKWISGVG 266
F G + F A R V D++ K + VG
Sbjct: 346 FSGADLRNVCTEAGLFAIRAEREYVIDEDFMKAVRKVG 383
>gi|308322419|gb|ADO28347.1| 26S protease regulatory subunit s10b [Ictalurus furcatus]
Length = 389
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 89/186 (47%), Gaps = 20/186 (10%)
Query: 64 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 123
++G G GK+ V +++ N + + + + GE A+LIR+ + A D +
Sbjct: 172 LYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIREMFNYARD----HQP 227
Query: 124 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 183
C + ++++DA GR ++ T ++ V TLM + + Q+ G + RV +I+
Sbjct: 228 CIIFMDEIDAIGGRR--FSEGTSADREVQRTLMELLN-----QMDGF---DTLHRVKMIM 277
Query: 184 TGNDFSTLYAPLIRDGRMEK--FYWAPTREDRIGVCK----GIFRNDNVADDDIVKLVDT 237
N TL L+R GR+++ P + R+ + K I ++ ++ + IVKL D
Sbjct: 278 ATNRPDTLDPALLRPGRLDRKIHIELPNEQARLDILKIHSGPITKHGDIDYEAIVKLSDG 337
Query: 238 FPGQSI 243
F G +
Sbjct: 338 FNGADL 343
>gi|261198899|ref|XP_002625851.1| ribosome biogenesis ATPase RIX7 [Ajellomyces dermatitidis SLH14081]
gi|239595003|gb|EEQ77584.1| ribosome biogenesis ATPase RIX7 [Ajellomyces dermatitidis SLH14081]
Length = 751
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 56/213 (26%), Positives = 97/213 (45%), Gaps = 21/213 (9%)
Query: 40 DKLVVHITK-NFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESG 98
D +V+ +T+ S ++ P + + G G GK+ A++G+ I +SA + SG
Sbjct: 191 DLIVLPMTRPQVYSSSKVQPPRGVLLHGPPGCGKTMIANAFAAELGVPFIAISAPSIVSG 250
Query: 99 NAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNI 158
+GE K +R+ + EA KK C + I+++DA + + Q + ++V L
Sbjct: 251 MSGESEKALREHFDEA----KKVAPCLIFIDEIDAITPKR-ESAQREMEKRIVAQLL--- 302
Query: 159 ADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKF--YWAPTREDRIGV 216
TC+ + + P V ++ N +L A L R GR +K P+ R +
Sbjct: 303 ----TCMDDLALEKTDGKP-VIVLAATNRPDSLDAALRRGGRFDKEINLTVPSEPVREQI 357
Query: 217 CKGIFRNDNVADD-DIVKLVDTFPGQSIDFFGA 248
+ + ++ N+ADD D L PG F GA
Sbjct: 358 LRALTKDMNLADDLDFKLLAKRTPG----FVGA 386
Score = 44.7 bits (104), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 48/200 (24%), Positives = 84/200 (42%), Gaps = 19/200 (9%)
Query: 56 IKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 115
I P + +WG G GK+ + V + N I + EL + GE + +RQ + A
Sbjct: 521 ITAPTGVLLWGPPGCGKTLLAKAVANESRANFISVKGPELLNKYVGESERAVRQVFVRAR 580
Query: 116 DIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEE 175
+ C + ++LDA R T + ++VN L + + Q G+Y
Sbjct: 581 SSVP----CVIFFDELDALVPRRDDTLS-EASARVVNTLLTELDGLGSARQ--GIY---- 629
Query: 176 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCKGIFRNDNVA-DDDIV 232
+I N + ++R GR+E + PT ++R+ + + + R + DDI
Sbjct: 630 -----VIAATNRPDIIDPAMLRPGRLETLLFVNLPTADERVEILQTLLRKMPIEFSDDIK 684
Query: 233 KLVDTFPGQSIDFFGALRAR 252
+L + G S G+L R
Sbjct: 685 ELARSCEGFSGADLGSLLRR 704
>gi|322371776|ref|ZP_08046319.1| proteasome-activating nucleotidase [Haladaptatus paucihalophilus
DX253]
gi|320548661|gb|EFW90332.1| proteasome-activating nucleotidase [Haladaptatus paucihalophilus
DX253]
Length = 405
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/176 (26%), Positives = 78/176 (44%), Gaps = 16/176 (9%)
Query: 56 IKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 115
I+ P + ++G G GK+ + V + I M+ EL GE AKL+R +
Sbjct: 180 IEPPSGVLLYGPPGTGKTMLAKAVANQTDATFIKMAGSELVHKFIGEGAKLVRDLF---- 235
Query: 116 DIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEE 175
++ ++ + L I+++DA A + T T + V T+M + L M E+
Sbjct: 236 EVARQHEPAVLFIDEIDAIASKR--TDSKTSGDAEVQRTMMQL--------LSEMDGFED 285
Query: 176 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPT--REDRIGVCKGIFRNDNVADD 229
+ II N F L ++R GR ++ P E R + + R+ N+ADD
Sbjct: 286 RGEIRIIAATNRFDMLDRAILRPGRFDRLIEVPNPGEEGREQIFRIHTRDMNIADD 341
>gi|326432763|gb|EGD78333.1| hypothetical protein PTSG_09399 [Salpingoeca sp. ATCC 50818]
Length = 864
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/176 (25%), Positives = 78/176 (44%), Gaps = 17/176 (9%)
Query: 56 IKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 115
I+ P + ++G G GK+ + + N I + EL + GE + +RQ + A
Sbjct: 603 IRKPPGVLLYGPPGCGKTLLAKALANSCNANFISIKGPELMNKFVGESERAVRQLFTRA- 661
Query: 116 DIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEE 175
K C + ++LDA R G + V+ ++VN L V+L G + EE
Sbjct: 662 ---KTSSPCVVFFDELDALCPRRGDASSSRVSERIVNQLL---------VELDGFDSGEE 709
Query: 176 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCKGIFRNDNVADD 229
++ +I N + ++R GR+EK + P + R + K RN ++A D
Sbjct: 710 --KIFVIGATNRIDIIDPAMLRPGRLEKLVYVDLPDQHARAEIFKTQARNISLAPD 763
>gi|225715516|gb|ACO13604.1| 26S protease regulatory subunit S10B [Esox lucius]
Length = 389
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 48/186 (25%), Positives = 88/186 (47%), Gaps = 20/186 (10%)
Query: 64 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 123
++G G GK+ V +++ N + + + + GE A+LIR+ + A D +
Sbjct: 172 LYGPPGTGKTLLARAVTSQLDCNFLKVVSSSIVDKYIGESARLIREMFNYARD----HQP 227
Query: 124 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 183
C + ++++DA GR ++ T ++ V TLM + + Q+ G E RV +I+
Sbjct: 228 CIIFMDEIDAIGGRR--FSEGTSADREVQRTLMELLN-----QMDGF---ETLHRVKMIM 277
Query: 184 TGNDFSTLYAPLIRDGRMEK--FYWAPTREDRIGVCK----GIFRNDNVADDDIVKLVDT 237
N TL L+R GR+++ P + R+ + K I ++ + + IVKL D
Sbjct: 278 ATNRPDTLDPALLRPGRLDRKIHIELPNEQARMDILKIHSGPITKHGEMDYEAIVKLSDG 337
Query: 238 FPGQSI 243
F G +
Sbjct: 338 FNGADL 343
>gi|147920787|ref|YP_685407.1| cell division cycle protein 48 [Methanocella arvoryzae MRE50]
gi|110620803|emb|CAJ36081.1| cell division cycle protein 48 [Methanocella arvoryzae MRE50]
Length = 743
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 54/205 (26%), Positives = 90/205 (43%), Gaps = 25/205 (12%)
Query: 48 KNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLI 107
K F + I+ P + ++G G GK+ V + N I + EL S GE K +
Sbjct: 487 KKFKDM-GIRPPKGIVLYGPPGTGKTLLARAVAGESEANFINIRGPELLSKWVGESEKAV 545
Query: 108 RQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQ--YTVNNQMVNATLMNIADNPTCV 165
R+ +R+A + + ++LDA A GG + V+ ++VN L + V
Sbjct: 546 RETFRKARQV----SPSIIFFDELDALAPARGGGGEDGSRVSERVVNQILTELDG---LV 598
Query: 166 QLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCKGIFRN 223
+L G V +I N + L+R GR ++ + AP++E RIG+ K RN
Sbjct: 599 ELEG---------VVVIGASNRPDIIDPALLRPGRFDRLVYVGAPSKEGRIGILKIHTRN 649
Query: 224 DNVADD----DIVKLVDTFPGQSID 244
+A D I L + + G ++
Sbjct: 650 MPLAADVDLGQIADLTENYVGSDLE 674
>gi|255939672|ref|XP_002560605.1| Pc16g02330 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211585228|emb|CAP92903.1| Pc16g02330 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 727
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 52/197 (26%), Positives = 89/197 (45%), Gaps = 20/197 (10%)
Query: 55 NIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREA 114
N++ P + + G G GK+ A++G+ I +SA + SG +GE K +R+ + EA
Sbjct: 191 NVQPPRGVLLHGPPGCGKTLIANAFAAELGVPFISISAPSVVSGMSGESEKALREYFEEA 250
Query: 115 ADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKE 174
K+ C + I+++DA + + Q + ++V L TC+ + +
Sbjct: 251 ----KRLAPCLIFIDEIDAITPKR-ESAQREMEKRIVAQLL-------TCMDEIALEKTD 298
Query: 175 ENPRVPIIVTGNDFSTLYAPLIRDGRMEKFY--WAPTREDRIGVCKGIFRNDNVADD-DI 231
P V ++ N +L A L R GR +K P+ R + + + R +ADD D+
Sbjct: 299 GKP-VIVLAATNRPDSLDAALRRGGRFDKEINMTVPSEPVREQILRALTRKMRLADDIDL 357
Query: 232 VKLVDTFPGQSIDFFGA 248
L PG F GA
Sbjct: 358 KTLAKRTPG----FVGA 370
Score = 43.1 bits (100), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 47/200 (23%), Positives = 85/200 (42%), Gaps = 19/200 (9%)
Query: 56 IKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 115
I P + +WG G GK+ + V + N I + EL + GE + +RQ + A
Sbjct: 498 ITAPTGVLLWGPPGCGKTLLAKAVANESRANFISVKGPELLNKFVGESERAVRQVFVRAR 557
Query: 116 DIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEE 175
+ C + ++LDA R T + ++VN L + + Q G+Y
Sbjct: 558 SSVP----CVIFFDELDALVPRRDDTLS-EASARVVNTLLTELDGLGSSRQ--GIY---- 606
Query: 176 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCKGIFRNDNVA-DDDIV 232
+I N + ++R GR+E + PT +R+ + + + R ++ ++D+
Sbjct: 607 -----VIAATNRPDIIDPAMLRPGRLETLLFVNLPTPLERVEILQTLVRKLSIEFNEDLR 661
Query: 233 KLVDTFPGQSIDFFGALRAR 252
KL + G S G+L R
Sbjct: 662 KLAEECEGFSGADLGSLLRR 681
>gi|209876752|ref|XP_002139818.1| 26S proteasome regulatory subunit S10B [Cryptosporidium muris RN66]
gi|209555424|gb|EEA05469.1| 26S proteasome regulatory subunit S10B, putative [Cryptosporidium
muris RN66]
Length = 391
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 49/194 (25%), Positives = 90/194 (46%), Gaps = 20/194 (10%)
Query: 56 IKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 115
IK P + ++G G GK+ + + M + + + A + GE A++IR+ + A
Sbjct: 166 IKTPKGVLLYGPPGTGKTLLARAMASSMSCSFMKVVASAIVDKYIGESARVIREMFGYA- 224
Query: 116 DIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEE 175
K+ + C + ++++DA G+ +Q T ++ + TLM + + QL G +E
Sbjct: 225 ---KEHQPCVIFMDEIDAIGGKR--FSQGTSADREIQRTLMELLN-----QLDGF---DE 271
Query: 176 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCK----GIFRNDNVADD 229
V II+ N L L+R GR+++ P R+ + + + + DN+ D
Sbjct: 272 LGAVKIIMATNRPDVLDPALLRPGRLDRKVEIPLPNETSRVEILRIHAEKLSKQDNIDYD 331
Query: 230 DIVKLVDTFPGQSI 243
I KL D F G +
Sbjct: 332 SICKLCDGFNGADL 345
>gi|449664501|ref|XP_002169843.2| PREDICTED: nuclear valosin-containing protein-like [Hydra
magnipapillata]
Length = 400
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 52/197 (26%), Positives = 87/197 (44%), Gaps = 22/197 (11%)
Query: 44 VHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEP 103
VH F SL + P IL + G G GK+ + + + GIN I + EL + GE
Sbjct: 101 VHNPVEFESLGLVTPPGIL-LAGPPGCGKTLLAKAIANEAGINFISVKGPELLNMYVGES 159
Query: 104 AKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPT 163
K +RQ ++ A K C + +++DA R T + ++++VN L
Sbjct: 160 EKAVRQVFQRA----KNSAPCVIFFDEIDALCPRRSETGDSSASSRVVNQLL-------- 207
Query: 164 CVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCKGIF 221
++ G+ E V I+ N L A ++R GR++K + P DR + I
Sbjct: 208 -TEMDGL---ETRKNVFIMGATNRPDILDAAILRPGRLDKLLYVGLPNPSDRKKILNTIT 263
Query: 222 RN---DNVADDDIVKLV 235
N +ADD ++++
Sbjct: 264 MNGTKPKMADDVTIEVI 280
>gi|70995044|ref|XP_752288.1| AAA family ATPase/60S ribosome export protein Rix7 [Aspergillus
fumigatus Af293]
gi|66849923|gb|EAL90250.1| AAA family ATPase/60S ribosome export protein Rix7, putative
[Aspergillus fumigatus Af293]
gi|159131044|gb|EDP56157.1| AAA family ATPase/60S ribosome export protein Rix7, putative
[Aspergillus fumigatus A1163]
Length = 784
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 61/229 (26%), Positives = 103/229 (44%), Gaps = 29/229 (12%)
Query: 25 LDNTIDGLYIAPAFMDKLVVHITKN--FMSLPNIKVPLILGIWGGKGQGKSFQCELVFAK 82
LD+ I L D L++ +T+ F+S N++ P + + G G GK+ A+
Sbjct: 225 LDDVIQSLG------DLLILPMTRPQVFVS-SNVQPPRGVLLHGPPGCGKTMIANAFAAE 277
Query: 83 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTT 142
+G+ I +SA + SG +GE K +R+ + EA K+ C + I+++DA + +
Sbjct: 278 LGVPFIPISAPSIVSGMSGESEKALREHFEEA----KRLAPCLIFIDEIDAITPKR-ESA 332
Query: 143 QYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRME 202
Q + ++V L TC+ + + P V ++ N +L A L R GR +
Sbjct: 333 QREMEKRIVAQLL-------TCMDDLALDKTDGKP-VIVLAATNRPDSLDAALRRGGRFD 384
Query: 203 KF--YWAPTREDRIGVCKGIFRNDNVADD-DIVKLVDTFPGQSIDFFGA 248
K P+ R + + + R +ADD D L PG F GA
Sbjct: 385 KEINMTVPSEPVREQILRALTRKMRLADDLDFKTLAKRTPG----FVGA 429
Score = 38.5 bits (88), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 45/200 (22%), Positives = 82/200 (41%), Gaps = 19/200 (9%)
Query: 56 IKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 115
I P + +WG G GK+ + V + N I + EL + GE + +RQ + A
Sbjct: 555 ITAPTGVLLWGPPGCGKTLLAKAVANESRANFISVKGPELLNKFVGESERAVRQVFVRAR 614
Query: 116 DIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEE 175
+ C + ++LDA R + ++VN L + + Q G+Y
Sbjct: 615 SSVP----CIIFFDELDALVPRRDDALS-EASARVVNTLLTELDGLGSSRQ--GIY---- 663
Query: 176 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCKGIFRNDNVA-DDDIV 232
+I N + ++R GR+E + P +R+ + K + R + ++D+
Sbjct: 664 -----VIAATNRPDIIDPAMLRPGRLETLLYVSLPNPLERVEILKTLVRKLPIEFNEDMR 718
Query: 233 KLVDTFPGQSIDFFGALRAR 252
+L + G S G+L R
Sbjct: 719 RLAEECEGFSGADLGSLLRR 738
>gi|402223610|gb|EJU03674.1| 26S proteasome subunit P45 [Dacryopinax sp. DJM-731 SS1]
Length = 399
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 48/194 (24%), Positives = 91/194 (46%), Gaps = 20/194 (10%)
Query: 56 IKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 115
IK P + ++G G GK+ V A M N + + + + GE A+L+R+ + A
Sbjct: 175 IKPPKGVLLYGPPGTGKTLLARAVAATMSTNFLKVVSSAIVDKYIGESARLVREMFGYA- 233
Query: 116 DIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEE 175
++ + C + ++++DA GR ++ T ++ + TLM + + Q+ G +
Sbjct: 234 ---REHEPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGF---DS 280
Query: 176 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCK----GIFRNDNVADD 229
R +I+ N TL L+R GR+++ P + R+ + K G+ + + D
Sbjct: 281 LGRTKLIMATNRPDTLDPALLRPGRLDRKIEIPLPNEQGRLEILKIHAAGVNKGGEIDFD 340
Query: 230 DIVKLVDTFPGQSI 243
+VKL D F G +
Sbjct: 341 AVVKLSDGFNGADL 354
>gi|320041387|gb|EFW23320.1| ribosome biogenesis ATPase [Coccidioides posadasii str. Silveira]
Length = 762
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 67/275 (24%), Positives = 120/275 (43%), Gaps = 33/275 (12%)
Query: 40 DKLVVHITK-NFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESG 98
D +V+ +T+ S ++ P + + G G GK+ A++G+ I +SA + SG
Sbjct: 209 DLIVLPMTRPQVYSSSKVQPPRGVLLHGPPGCGKTLIANAFAAELGVPFIAISAPSIVSG 268
Query: 99 NAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNI 158
+GE K +R+ + EA KK C + I+++DA + + Q + ++V L
Sbjct: 269 MSGESEKALREHFDEA----KKAAPCLVFIDEIDAITPKR-ESAQREMEKRIVAQLL--- 320
Query: 159 ADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKF--YWAPTREDRIGV 216
TC+ + + P V ++ N +L L R GR +K P+ R +
Sbjct: 321 ----TCMDDLALEKTDGKP-VIVLAATNRPDSLDPALRRGGRFDKEINLSVPSEPVREQI 375
Query: 217 CKGIFRNDNVADD-DIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISGVGVGSIGKSLV 275
+ + RN N+A+ D L PG F GA ++ +S G +I + L
Sbjct: 376 LRTLTRNMNLANGLDFPLLAKRTPG----FVGA--------DLNDLVSTAGTAAIKRYLD 423
Query: 276 NSKEAAPT---FEQPRMTME-KLLEYGNMIVQEQE 306
+ K E+P+ + K+LE +I + +E
Sbjct: 424 HLKSLGDEEMDIEEPQSNISPKILELRRLIRRARE 458
Score = 43.5 bits (101), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 48/200 (24%), Positives = 82/200 (41%), Gaps = 19/200 (9%)
Query: 56 IKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 115
I P + +WG G GK+ + V + N I + EL + GE + +RQ + A
Sbjct: 531 ISAPTGVLLWGPPGCGKTLLAKAVANESRANFISVKGPELLNKYVGESERAVRQVFVRAR 590
Query: 116 DIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEE 175
I C + ++LDA R T + ++VN L + + Q G+Y
Sbjct: 591 SSIP----CVIFFDELDALVPRRDDTLS-EASARVVNTLLTELDGLGSARQ--GIY---- 639
Query: 176 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCKGIFRNDNV-ADDDIV 232
+I N + ++R GR+E + P+ +R+ + + + R V +I
Sbjct: 640 -----VIAATNRPDIIDPAMLRPGRLETLLFVNLPSENERVDILRTLVRKLTVEVTPEIE 694
Query: 233 KLVDTFPGQSIDFFGALRAR 252
LV + G S G+L R
Sbjct: 695 ALVRSCEGYSGADLGSLLRR 714
>gi|51467888|ref|NP_001003832.1| 26S protease regulatory subunit S10B [Danio rerio]
gi|49619121|gb|AAT68145.1| 26S protease regulatory subunit S10B [Danio rerio]
gi|54035446|gb|AAH83283.1| Proteasome (prosome, macropain) 26S subunit, ATPase, 6 [Danio
rerio]
gi|94734053|emb|CAK10966.1| proteasome (prosome, macropain) 26S subunit, ATPase, 6 [Danio
rerio]
gi|156230928|gb|AAI52261.1| Proteasome (prosome, macropain) 26S subunit, ATPase, 6 [Danio
rerio]
gi|161611577|gb|AAI55770.1| Proteasome (prosome, macropain) 26S subunit, ATPase, 6 [Danio
rerio]
gi|182890938|gb|AAI65828.1| Psmc6 protein [Danio rerio]
Length = 389
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/186 (24%), Positives = 89/186 (47%), Gaps = 20/186 (10%)
Query: 64 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 123
++G G GK+ V +++ N + + + + GE A+LIR+ + A D +
Sbjct: 172 LYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIREMFNYARD----HQP 227
Query: 124 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 183
C + ++++DA GR ++ T ++ + TLM + + Q+ G + RV +I+
Sbjct: 228 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGF---DTLHRVKMIM 277
Query: 184 TGNDFSTLYAPLIRDGRMEK--FYWAPTREDRIGVCK----GIFRNDNVADDDIVKLVDT 237
N TL L+R GR+++ P + R+ + K I ++ ++ + IVKL D
Sbjct: 278 ATNRPDTLDPALLRPGRLDRKIHIELPNEQARLDILKIHSGPITKHGDIDYEAIVKLSDG 337
Query: 238 FPGQSI 243
F G +
Sbjct: 338 FNGADL 343
>gi|297297860|ref|XP_001082028.2| PREDICTED: 26S protease regulatory subunit S10B-like [Macaca
mulatta]
Length = 409
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 89/186 (47%), Gaps = 20/186 (10%)
Query: 64 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 123
++G G GK+ V +++ N + + + + GE A+LIR+ + A D +
Sbjct: 192 LYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIREMFNYARD----HQP 247
Query: 124 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 183
C + ++++DA GR ++ T ++ + TLM++ + Q+ G + RV +I+
Sbjct: 248 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMDLLN-----QMDGF---DTLHRVKMIM 297
Query: 184 TGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCK----GIFRNDNVADDDIVKLVDT 237
T N TL L+R GR+++ P + R+ K I ++ + + IVKL D
Sbjct: 298 TTNRPDTLDLALLRPGRLDRKIHIDLPNEQARLDTLKIHAGPITKHGEIDYEAIVKLSDG 357
Query: 238 FPGQSI 243
F G +
Sbjct: 358 FNGADL 363
>gi|390951337|ref|YP_006415096.1| AAA ATPase [Thiocystis violascens DSM 198]
gi|390427906|gb|AFL74971.1| AAA+ family ATPase [Thiocystis violascens DSM 198]
Length = 496
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/156 (28%), Positives = 73/156 (46%), Gaps = 25/156 (16%)
Query: 60 LILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIK 119
L+LG+ GG GKS + V + G+ + + G L GE K +R R + AD++
Sbjct: 268 LLLGVQGG---GKSLAAKAVAGRFGVPLLRIDFGALYDKYIGETEKNLR-RALDTADLMA 323
Query: 120 KGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRV 179
C L I++++ G G+ V +++ L+ +A+ T RV
Sbjct: 324 P---CVLWIDEIEKGIA--SGSEDEGVGRRILGTLLIWMAERAT--------------RV 364
Query: 180 PIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDR 213
++ T ND S L LIR GR+++ ++ PT E R
Sbjct: 365 FLVATANDISRLPPELIRKGRIDELFFVDLPTAEVR 400
>gi|303320579|ref|XP_003070289.1| ATPase, AAA family protein [Coccidioides posadasii C735 delta
SOWgp]
gi|240109975|gb|EER28144.1| ATPase, AAA family protein [Coccidioides posadasii C735 delta
SOWgp]
Length = 762
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 67/275 (24%), Positives = 120/275 (43%), Gaps = 33/275 (12%)
Query: 40 DKLVVHITK-NFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESG 98
D +V+ +T+ S ++ P + + G G GK+ A++G+ I +SA + SG
Sbjct: 209 DLIVLPMTRPQVYSSSKVQPPRGVLLHGPPGCGKTLIANAFAAELGVPFIAISAPSIVSG 268
Query: 99 NAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNI 158
+GE K +R+ + EA KK C + I+++DA + + Q + ++V L
Sbjct: 269 MSGESEKALREHFDEA----KKAAPCLVFIDEIDAITPKR-ESAQREMEKRIVAQLL--- 320
Query: 159 ADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKF--YWAPTREDRIGV 216
TC+ + + P V ++ N +L L R GR +K P+ R +
Sbjct: 321 ----TCMDDLALEKTDGKP-VIVLAATNRPDSLDPALRRGGRFDKEINLSVPSEPVREQI 375
Query: 217 CKGIFRNDNVADD-DIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISGVGVGSIGKSLV 275
+ + RN N+A+ D L PG F GA ++ +S G +I + L
Sbjct: 376 LRTLTRNMNLANGLDFPLLAKRTPG----FVGA--------DLNDLVSTAGTAAIKRYLD 423
Query: 276 NSKEAAPT---FEQPRMTME-KLLEYGNMIVQEQE 306
+ K E+P+ + K+LE +I + +E
Sbjct: 424 HLKSLGDEEMDIEEPQSNISPKILELRRLIRRARE 458
Score = 43.5 bits (101), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 48/200 (24%), Positives = 82/200 (41%), Gaps = 19/200 (9%)
Query: 56 IKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 115
I P + +WG G GK+ + V + N I + EL + GE + +RQ + A
Sbjct: 531 ISAPTGVLLWGPPGCGKTLLAKAVANESRANFISVKGPELLNKYVGESERAVRQVFVRAR 590
Query: 116 DIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEE 175
I C + ++LDA R T + ++VN L + + Q G+Y
Sbjct: 591 SSIP----CVIFFDELDALVPRRDDTLS-EASARVVNTLLTELDGLGSARQ--GIY---- 639
Query: 176 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCKGIFRNDNV-ADDDIV 232
+I N + ++R GR+E + P+ +R+ + + + R V +I
Sbjct: 640 -----VIAATNRPDIIDPAMLRPGRLETLLFVNLPSENERVDILRTLVRKLTVEVTPEIE 694
Query: 233 KLVDTFPGQSIDFFGALRAR 252
LV + G S G+L R
Sbjct: 695 ALVRSCEGYSGADLGSLLRR 714
>gi|448374252|ref|ZP_21558137.1| proteasome-activating nucleotidase [Halovivax asiaticus JCM 14624]
gi|445660929|gb|ELZ13724.1| proteasome-activating nucleotidase [Halovivax asiaticus JCM 14624]
Length = 404
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 48/176 (27%), Positives = 78/176 (44%), Gaps = 16/176 (9%)
Query: 56 IKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 115
I+ P + ++G G GK+ + V K I M+ EL GE AKL+R +
Sbjct: 179 IQPPSGVLLYGPPGTGKTMLAKAVANKTDATFIKMAGSELVHKFIGEGAKLVRDLF---- 234
Query: 116 DIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEE 175
++ ++ + L I+++DA A + T T + V T+M + L M E+
Sbjct: 235 EVAREHEPAVLFIDEIDAIAAKR--TESKTSGDAEVQRTMMQL--------LSEMDGFED 284
Query: 176 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPT--REDRIGVCKGIFRNDNVADD 229
+ II N F L ++R GR ++ P E R + + R+ NVADD
Sbjct: 285 RGDIRIIAATNRFDMLDRAILRPGRFDRLIEVPKPDAEGRELIFEIHTRDMNVADD 340
>gi|392866138|gb|EAS28750.2| ribosome biogenesis ATPase RIX7 [Coccidioides immitis RS]
Length = 741
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 67/275 (24%), Positives = 120/275 (43%), Gaps = 33/275 (12%)
Query: 40 DKLVVHITK-NFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESG 98
D +V+ +T+ S ++ P + + G G GK+ A++G+ I +SA + SG
Sbjct: 188 DLIVLPMTRPQVYSSSKVQPPRGVLLHGPPGCGKTLIANAFAAELGVPFIAISAPSIVSG 247
Query: 99 NAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNI 158
+GE K +R+ + EA KK C + I+++DA + + Q + ++V L
Sbjct: 248 MSGESEKALREHFDEA----KKAAPCLVFIDEIDAITPKR-ESAQREMEKRIVAQLL--- 299
Query: 159 ADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKF--YWAPTREDRIGV 216
TC+ + + P V ++ N +L L R GR +K P+ R +
Sbjct: 300 ----TCMDDLALEKTDGKP-VIVLAATNRPDSLDPALRRGGRFDKEINLSVPSEPVREQI 354
Query: 217 CKGIFRNDNVADD-DIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISGVGVGSIGKSLV 275
+ + RN N+A+ D L PG F GA ++ +S G +I + L
Sbjct: 355 LRTLTRNMNLANGLDFPLLAKRTPG----FVGA--------DLNDLVSTAGTAAIKRYLD 402
Query: 276 NSKEAAPT---FEQPRMTME-KLLEYGNMIVQEQE 306
+ K E+P+ + K+LE +I + +E
Sbjct: 403 HLKSLGDEEMDIEEPQSNISPKILELRRLIRRARE 437
Score = 45.4 bits (106), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 49/200 (24%), Positives = 83/200 (41%), Gaps = 19/200 (9%)
Query: 56 IKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 115
I P + +WG G GK+ + V + N I + EL + GE + +RQ + A
Sbjct: 510 ISAPTGVLLWGPPGCGKTLLAKAVANESRANFISVKGPELLNKYVGESERAVRQVFVRAR 569
Query: 116 DIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEE 175
I C + ++LDA R T + ++VN L + + Q G+Y
Sbjct: 570 SSIP----CVIFFDELDALVPRRDDTLS-EASARVVNTLLTELDGLGSARQ--GIY---- 618
Query: 176 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCKGIFRNDNV-ADDDIV 232
+I N + ++R GR+E + P+ +R+ + + + RN V +I
Sbjct: 619 -----VIAATNRPDIIDPAMLRPGRLETLLFVNLPSENERVDILRTLVRNLTVEVTPEIE 673
Query: 233 KLVDTFPGQSIDFFGALRAR 252
LV + G S G+L R
Sbjct: 674 ALVRSCEGYSGADLGSLLRR 693
>gi|384567624|ref|ZP_10014728.1| AAA+ family ATPase [Saccharomonospora glauca K62]
gi|384523478|gb|EIF00674.1| AAA+ family ATPase [Saccharomonospora glauca K62]
Length = 748
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 65/301 (21%), Positives = 123/301 (40%), Gaps = 38/301 (12%)
Query: 10 MSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLV--VHITKNFMSLPNIKVPLILGIWGG 67
MS+ D ++ G LD+ D + + + ++ + +F L I P + ++G
Sbjct: 474 MSTTDTLATG--GITLDDVGDMAEVKQSLTEAVLWPLRYPDSFARL-GIAPPRGVLLYGP 530
Query: 68 KGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLM 127
G GK+F + +N + EL GE + +R+ +R AA+ +
Sbjct: 531 PGNGKTFLVRALAGTGALNVFSVKGAELLDKWVGESERAVRELFRRAAE----AAPALIF 586
Query: 128 INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGND 187
++++DA A R G ++ ++++V A L + + E R ++V +
Sbjct: 587 LDEVDALAPRRGQSSDSGASDRVVAALLTEL-------------DGVEPLRDVVVVGATN 633
Query: 188 FSTLYAP-LIRDGRMEKFYWAPT--REDRIGVCKGIFRNDNVADD-DIVKLVDTFPGQSI 243
L P L+R GR+E+ + P E R + + RN +A D D+ +L G S
Sbjct: 634 RPELVDPALLRPGRLERLIYVPPPDAEARAAILRAGARNTPLASDVDLDELATQLDGYSA 693
Query: 244 DFFGALRARVYDDEVRKWISGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQ 303
AL I + ++ +SL ++ A E+ R T+ L+ +
Sbjct: 694 ADCAAL------------IREAALSAMRESLEATEVTARHLEKARETVRPSLDPAQLAAL 741
Query: 304 E 304
E
Sbjct: 742 E 742
>gi|433638161|ref|YP_007283921.1| 26S proteasome subunit P45 family [Halovivax ruber XH-70]
gi|433289965|gb|AGB15788.1| 26S proteasome subunit P45 family [Halovivax ruber XH-70]
Length = 404
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 48/176 (27%), Positives = 78/176 (44%), Gaps = 16/176 (9%)
Query: 56 IKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 115
I+ P + ++G G GK+ + V K I M+ EL GE AKL+R +
Sbjct: 179 IQPPSGVLLYGPPGTGKTMLAKAVANKTDATFIKMAGSELVHKFIGEGAKLVRDLF---- 234
Query: 116 DIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEE 175
++ ++ + L I+++DA A + T T + V T+M + L M E+
Sbjct: 235 EVAREHEPAVLFIDEIDAIAAKR--TESKTSGDAEVQRTMMQL--------LSEMDGFED 284
Query: 176 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPT--REDRIGVCKGIFRNDNVADD 229
+ II N F L ++R GR ++ P E R + + R+ NVADD
Sbjct: 285 RGDIRIIAATNRFDMLDRAILRPGRFDRLIEVPKPDAEGRELIFEIHTRDMNVADD 340
>gi|225678278|gb|EEH16562.1| cdcH [Paracoccidioides brasiliensis Pb03]
Length = 801
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 56/213 (26%), Positives = 97/213 (45%), Gaps = 21/213 (9%)
Query: 40 DKLVVHITK-NFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESG 98
D +V+ +T+ S ++ P + + G G GK+ A++G+ I +SA + SG
Sbjct: 242 DLIVLPMTRPQVYSSSKVQPPRGVLLHGPPGCGKTMIANAFAAELGVPFIAISAPSIVSG 301
Query: 99 NAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNI 158
+GE K +R+ + EA KK C + I+++DA + + Q + ++V L
Sbjct: 302 MSGESEKALREHFEEA----KKVAPCLIFIDEIDAITPKR-ESAQREMEKRIVAQLL--- 353
Query: 159 ADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKF--YWAPTREDRIGV 216
TC+ + + P V ++ N +L A L R GR +K P+ R +
Sbjct: 354 ----TCMDDLALEKTDGKP-VIVLAATNRPDSLDAALRRGGRFDKEINLTVPSEPVREQI 408
Query: 217 CKGIFRNDNVADD-DIVKLVDTFPGQSIDFFGA 248
+ + ++ N+ADD D L PG F GA
Sbjct: 409 LRVLTKDMNLADDLDFKLLAKRTPG----FVGA 437
Score = 42.0 bits (97), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 39/170 (22%), Positives = 72/170 (42%), Gaps = 18/170 (10%)
Query: 56 IKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 115
I P + +WG G GK+ + V + N I + EL + GE + +RQ + A
Sbjct: 569 ITAPTGVLLWGPPGCGKTLLAKAVANESRANFISVKGPELLNKFVGESERAVRQVFVRAR 628
Query: 116 DIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEE 175
+ C + ++LDA R T + ++VN L + + Q G+Y
Sbjct: 629 SSVP----CVIFFDELDALVPRRDDTLS-EASARVVNTLLTELDGLGSARQ--GIY---- 677
Query: 176 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCKGIFRN 223
+I N + ++R GR+E + P+ ++R+ + + + RN
Sbjct: 678 -----VIAATNRPDIIDPAMLRPGRLETLLFVNLPSADERVEILQTLVRN 722
>gi|212528130|ref|XP_002144222.1| AAA family ATPase/60S ribosome export protein Rix7, putative
[Talaromyces marneffei ATCC 18224]
gi|210073620|gb|EEA27707.1| AAA family ATPase/60S ribosome export protein Rix7, putative
[Talaromyces marneffei ATCC 18224]
Length = 741
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 70/303 (23%), Positives = 128/303 (42%), Gaps = 39/303 (12%)
Query: 40 DKLVVHITK-NFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESG 98
D +++ +T+ + ++ P + + G G GK+ A +G+ I +SA + SG
Sbjct: 189 DLIILPMTRPQIFTSSKVQPPRGVLLHGPPGCGKTMLANAFAADLGVPFISISAPSIVSG 248
Query: 99 NAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNI 158
+GE K +R+ + EA KK C + I+++DA + + Q + ++V L
Sbjct: 249 MSGESEKALREHFDEA----KKVAPCLIFIDEIDAITPKR-ESAQREMEKRIVAQLL--- 300
Query: 159 ADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKF--YWAPTREDRIGV 216
TC+ + + P V ++ N +L L R GR +K P+ R +
Sbjct: 301 ----TCMDDLALEKTDGKP-VIVLAATNRPDSLDPALRRGGRFDKEINLTVPSEPVREQI 355
Query: 217 CKGIFRNDNVADD-DIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISGVGVGSIGKSLV 275
+ + R +ADD D L G F GA ++ +S G +I + L
Sbjct: 356 LRTLTRKMQLADDLDFSTLAKRTAG----FVGA--------DLNDLVSTAGAAAIKRYL- 402
Query: 276 NSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAALG-EANEDAIQSG 334
E + M +E + E + E VK ++ K+ EA +G E+N + +
Sbjct: 403 ---ELLKSNTGEEMDIEDMTEQ-----EATEKVKEIRRLIKHAKEAPIGQESNPVLVSNA 454
Query: 335 NFY 337
+F+
Sbjct: 455 DFF 457
Score = 38.5 bits (88), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 46/200 (23%), Positives = 83/200 (41%), Gaps = 19/200 (9%)
Query: 56 IKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 115
I P + +WG G GK+ + V + N I + EL + GE + +RQ + A
Sbjct: 512 ITAPTGVLLWGPPGCGKTLLAKAVANESRANFISIKGPELLNKYVGESERAVRQVFVRAR 571
Query: 116 DIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEE 175
I C + ++LDA R + + ++VN L +L G+ + +
Sbjct: 572 SSIP----CVIFFDELDALVPRRDDALSES-SARVVNTLL---------TELDGLGSNRQ 617
Query: 176 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCKGIFRNDNVA-DDDIV 232
+ II N + ++R GR+E + P +R + + + RN + +D +
Sbjct: 618 G--IYIIAATNRPDIIDPAMLRPGRLETLLFVNLPGPSERAEILQTLVRNLPIEFNDQMR 675
Query: 233 KLVDTFPGQSIDFFGALRAR 252
L ++ G S G+L R
Sbjct: 676 ALAESCEGYSGADIGSLLRR 695
>gi|58259998|ref|XP_567409.1| ATPase [Cryptococcus neoformans var. neoformans JEC21]
gi|134116132|ref|XP_773237.1| hypothetical protein CNBJ0160 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50255859|gb|EAL18590.1| hypothetical protein CNBJ0160 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|57229459|gb|AAW45892.1| ATPase, putative [Cryptococcus neoformans var. neoformans JEC21]
Length = 405
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 88/186 (47%), Gaps = 20/186 (10%)
Query: 64 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 123
++G G GK+ V A + N + + + + GE A+LIR+ + A ++ +
Sbjct: 188 LYGPPGTGKTLLARAVAATLNTNFLKVVSSAIVDKYIGESARLIREMFAYA----REHEP 243
Query: 124 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 183
C + ++++DA GR +Q T ++ + TLM + + Q+ G E R II+
Sbjct: 244 CVIFMDEIDAIGGRR--FSQGTSADREIQRTLMELLN-----QMDGF---ESLGRTKIIM 293
Query: 184 TGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGV----CKGIFRNDNVADDDIVKLVDT 237
N TL L+R GR+++ P + R+ + K + ++ ++ + IVKL D
Sbjct: 294 ATNRPDTLDPALLRPGRLDRKIEIPLPNEQGRLEILKIHAKKVNKSGDIDYEAIVKLSDG 353
Query: 238 FPGQSI 243
F G +
Sbjct: 354 FNGADL 359
>gi|242023130|ref|XP_002431989.1| conserved hypothetical protein [Pediculus humanus corporis]
gi|212517340|gb|EEB19251.1| conserved hypothetical protein [Pediculus humanus corporis]
Length = 942
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/182 (23%), Positives = 81/182 (44%), Gaps = 19/182 (10%)
Query: 44 VHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEP 103
V K F L + P + I G G GK+ + V + GIN I + EL + GE
Sbjct: 684 VKYRKQFEQL-GLTAPAGILICGPPGCGKTLLAKAVANEAGINFISVKGPELLNMYVGES 742
Query: 104 AKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPT 163
+ +R+ ++ A + C + ++LD+ R T + ++VN L
Sbjct: 743 ERAVRRCFQRA----RSSAPCVIFFDELDSLCPRRSDTPESGATMRVVNQLL-------- 790
Query: 164 CVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCKGIF 221
++ G+ +++E V I+ N + ++R GR++K + P EDR+ + + +
Sbjct: 791 -TEMDGIEDRKE---VYIMAATNRPDIIDPAVLRPGRLDKILYVGLPQEEDRVDILRAVT 846
Query: 222 RN 223
+N
Sbjct: 847 KN 848
>gi|15920392|ref|NP_376061.1| hypothetical protein ST0209 [Sulfolobus tokodaii str. 7]
Length = 689
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 49/176 (27%), Positives = 80/176 (45%), Gaps = 18/176 (10%)
Query: 56 IKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 115
I+ P + ++G G GK+ + V + G N I + E+ S GE K IR+ +R+A
Sbjct: 416 IEPPKGILLFGPPGTGKTMLAKAVATESGANFIAVRGPEILSKWVGESEKAIREIFRKA- 474
Query: 116 DIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEE 175
++ + +++DA A G TT V ++VN L ++ G+ K E
Sbjct: 475 ---RQAAPTVIFFDEIDAIAPMRGLTTDSGVTERIVNQLL---------AEMDGI-EKLE 521
Query: 176 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPT--REDRIGVCKGIFRNDNVADD 229
N V II N L L+R GR ++ + P + R + K RN +A+D
Sbjct: 522 N--VVIIAATNRPDILDPALLRPGRFDRLIYVPPPDKRARAEILKVHTRNVPLAED 575
>gi|448344921|ref|ZP_21533822.1| proteasome-activating nucleotidase [Natrinema altunense JCM 12890]
gi|445636471|gb|ELY89632.1| proteasome-activating nucleotidase [Natrinema altunense JCM 12890]
Length = 405
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 46/168 (27%), Positives = 73/168 (43%), Gaps = 16/168 (9%)
Query: 64 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 123
++G G GK+ + V + I M+ EL GE AKL+R + D+ ++ +
Sbjct: 188 LYGPPGTGKTMLAKAVANQTDATFIKMAGSELVHKFIGEGAKLVRDLF----DVAREHEP 243
Query: 124 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 183
+ I+++DA A + T T + V T+M + L M EE + II
Sbjct: 244 AVIFIDEIDAIAAKR--TESKTSGDAEVQRTMMQL--------LSEMDGFEERGEIRIIA 293
Query: 184 TGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCKGIFRNDNVADD 229
N F L ++R GR ++ P E R + + R NVADD
Sbjct: 294 ATNRFDMLDRAILRPGRFDRLIEVPKPNAEGREIIFEIHTRGMNVADD 341
>gi|355745594|gb|EHH50219.1| hypothetical protein EGM_01010, partial [Macaca fascicularis]
Length = 392
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 46/186 (24%), Positives = 89/186 (47%), Gaps = 20/186 (10%)
Query: 64 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 123
++G G GK+ + +++ N + + + + GE A+LIR+ + A D +
Sbjct: 175 LYGPPGTGKTLLARAIASQLDCNFLKVVSSSIVDKYIGESARLIREMFNYARD----HQP 230
Query: 124 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 183
C + ++++DA GR ++ T ++ + TLM++ + Q+ G + RV +I+
Sbjct: 231 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMDLLN-----QMDGF---DTLHRVKMIM 280
Query: 184 TGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCK----GIFRNDNVADDDIVKLVDT 237
T N TL L+R GR+++ P + R+ K I ++ + + IVKL D
Sbjct: 281 TTNRPDTLDLALLRPGRLDRKIHIDLPNEQARLDTLKIHAGPITKHGEIDYEAIVKLSDG 340
Query: 238 FPGQSI 243
F G +
Sbjct: 341 FNGADL 346
>gi|268325728|emb|CBH39316.1| cell division control protein 48 [uncultured archaeon]
Length = 739
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 76/172 (44%), Gaps = 18/172 (10%)
Query: 49 NFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIR 108
+ SL N K P + ++G G GK+ + V + N I + EL S GE K +R
Sbjct: 484 DVFSLLNTKPPKGILLFGPPGTGKTMLVKAVANESDANFISIKGPELLSKWVGESEKAVR 543
Query: 109 QRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLP 168
+ +R+A K+ C + ++++D+ A G V ++V+ L
Sbjct: 544 EIFRKA----KQSSPCIIFLDEIDSIAPIRGAGLDSHVTERVVSQILTE----------- 588
Query: 169 GMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCK 218
M EE V II N + L+R GR+++ + +PT+E R + K
Sbjct: 589 -MDGLEELKDVMIIAATNRPDIIDPALLRPGRLDRLIYIQSPTKEAREAIFK 639
>gi|348537164|ref|XP_003456065.1| PREDICTED: 26S protease regulatory subunit 10B [Oreochromis
niloticus]
Length = 389
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 46/186 (24%), Positives = 88/186 (47%), Gaps = 20/186 (10%)
Query: 64 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 123
++G G GK+ V +++ N + + + + GE A+LIR+ + A D +
Sbjct: 172 LYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIREMFNYARD----HQP 227
Query: 124 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 183
C + ++++DA GR ++ T ++ + TLM + + Q+ G + RV +I+
Sbjct: 228 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGF---DTLHRVKMIM 277
Query: 184 TGNDFSTLYAPLIRDGRMEK--FYWAPTREDRIGVCK----GIFRNDNVADDDIVKLVDT 237
N TL L+R GR+++ P + R+ + K I ++ + + IVKL D
Sbjct: 278 ATNRPDTLDPALLRPGRLDRKIHIELPNEQARLDILKIHSSPITKHGEIDFEAIVKLSDG 337
Query: 238 FPGQSI 243
F G +
Sbjct: 338 FNGADL 343
>gi|448337724|ref|ZP_21526798.1| proteasome-activating nucleotidase [Natrinema pallidum DSM 3751]
gi|445624925|gb|ELY78296.1| proteasome-activating nucleotidase [Natrinema pallidum DSM 3751]
Length = 405
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 46/168 (27%), Positives = 73/168 (43%), Gaps = 16/168 (9%)
Query: 64 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 123
++G G GK+ + V + I M+ EL GE AKL+R + D+ ++ +
Sbjct: 188 LYGPPGTGKTMLAKAVANQTDATFIKMAGSELVHKFIGEGAKLVRDLF----DVAREHEP 243
Query: 124 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 183
+ I+++DA A + T T + V T+M + L M EE + II
Sbjct: 244 AVIFIDEIDAIAAKR--TESKTSGDAEVQRTMMQL--------LSEMDGFEERGEIRIIA 293
Query: 184 TGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCKGIFRNDNVADD 229
N F L ++R GR ++ P E R + + R NVADD
Sbjct: 294 ATNRFDMLDRAILRPGRFDRLIEVPKPNAEGREIIFEIHTRGMNVADD 341
>gi|433591994|ref|YP_007281490.1| 26S proteasome subunit P45 family [Natrinema pellirubrum DSM 15624]
gi|448334330|ref|ZP_21523508.1| proteasome-activating nucleotidase [Natrinema pellirubrum DSM
15624]
gi|433306774|gb|AGB32586.1| 26S proteasome subunit P45 family [Natrinema pellirubrum DSM 15624]
gi|445620216|gb|ELY73722.1| proteasome-activating nucleotidase [Natrinema pellirubrum DSM
15624]
Length = 405
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 46/168 (27%), Positives = 73/168 (43%), Gaps = 16/168 (9%)
Query: 64 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 123
++G G GK+ + V + I M+ EL GE AKL+R + D+ ++ +
Sbjct: 188 LYGPPGTGKTMLAKAVANQTDATFIKMAGSELVHKFIGEGAKLVRDLF----DVAREHEP 243
Query: 124 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 183
+ I+++DA A + T T + V T+M + L M EE + II
Sbjct: 244 AVIFIDEIDAIAAKR--TESKTSGDAEVQRTMMQL--------LSEMDGFEERGEIRIIA 293
Query: 184 TGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCKGIFRNDNVADD 229
N F L ++R GR ++ P E R + + R NVADD
Sbjct: 294 ATNRFDMLDRAILRPGRFDRLIEVPKPNAEGREIIFEIHTRGMNVADD 341
>gi|342306104|dbj|BAK54193.1| ATPase [Sulfolobus tokodaii str. 7]
Length = 773
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 49/176 (27%), Positives = 80/176 (45%), Gaps = 18/176 (10%)
Query: 56 IKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 115
I+ P + ++G G GK+ + V + G N I + E+ S GE K IR+ +R+A
Sbjct: 500 IEPPKGILLFGPPGTGKTMLAKAVATESGANFIAVRGPEILSKWVGESEKAIREIFRKA- 558
Query: 116 DIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEE 175
++ + +++DA A G TT V ++VN L ++ G+ K E
Sbjct: 559 ---RQAAPTVIFFDEIDAIAPMRGLTTDSGVTERIVNQLL---------AEMDGI-EKLE 605
Query: 176 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPT--REDRIGVCKGIFRNDNVADD 229
N V II N L L+R GR ++ + P + R + K RN +A+D
Sbjct: 606 N--VVIIAATNRPDILDPALLRPGRFDRLIYVPPPDKRARAEILKVHTRNVPLAED 659
>gi|229367834|gb|ACQ58897.1| 26S protease regulatory subunit S10B [Anoplopoma fimbria]
Length = 389
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 46/186 (24%), Positives = 88/186 (47%), Gaps = 20/186 (10%)
Query: 64 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 123
++G G GK+ V +++ N + + + + GE A+LIR+ + A D +
Sbjct: 172 LYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIREMFNYARD----HQP 227
Query: 124 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 183
C + ++++DA GR ++ T ++ + TLM + + Q+ G + RV +I+
Sbjct: 228 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGF---DTLHRVKMIM 277
Query: 184 TGNDFSTLYAPLIRDGRMEK--FYWAPTREDRIGVCK----GIFRNDNVADDDIVKLVDT 237
N TL L+R GR+++ P + R+ + K I ++ + + IVKL D
Sbjct: 278 ATNRPDTLDPALLRPGRLDRKIHIELPNEQARLDILKIHASPITKHGEIDYEAIVKLSDG 337
Query: 238 FPGQSI 243
F G +
Sbjct: 338 FNGADL 343
>gi|374635878|ref|ZP_09707467.1| AAA family ATPase, CDC48 subfamily [Methanotorris formicicus
Mc-S-70]
gi|373560840|gb|EHP87090.1| AAA family ATPase, CDC48 subfamily [Methanotorris formicicus
Mc-S-70]
Length = 732
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 50/188 (26%), Positives = 87/188 (46%), Gaps = 19/188 (10%)
Query: 56 IKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 115
I+ P + ++G G GK+ + V + N I + E+ S GE K IR+ +R+A
Sbjct: 483 IRPPRGVLLFGPPGTGKTLLAKAVANESEANFISVKGPEIFSKWVGESEKAIREIFRKA- 541
Query: 116 DIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEE 175
++ + +++D+ A R G V ++VN L +L G+ EE
Sbjct: 542 ---RQTAPTVIFFDEIDSIAPRRGSGHDSGVTEKVVNQLL---------TELDGL---EE 586
Query: 176 NPRVPIIVTGNDFSTLYAPLIRDGRMEK--FYWAPTREDRIGVCKGIFRNDNVADD-DIV 232
V +I N L L+R GR+++ F AP ++ R+ + K +N +A+D D+
Sbjct: 587 PKDVVVIAATNRPDILDPALLRPGRLDRIVFVPAPDKKTRLSIFKVHTKNMPLAEDVDLE 646
Query: 233 KLVDTFPG 240
KL + G
Sbjct: 647 KLAEKTEG 654
>gi|47205942|emb|CAF93631.1| unnamed protein product [Tetraodon nigroviridis]
Length = 389
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 46/186 (24%), Positives = 88/186 (47%), Gaps = 20/186 (10%)
Query: 64 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 123
++G G GK+ V +++ N + + + + GE A+LIR+ + A D +
Sbjct: 172 LYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIREMFNYARD----HQP 227
Query: 124 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 183
C + ++++DA GR ++ T ++ + TLM + + Q+ G + RV +I+
Sbjct: 228 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGF---DTLHRVKMIM 277
Query: 184 TGNDFSTLYAPLIRDGRMEK--FYWAPTREDRIGVCK----GIFRNDNVADDDIVKLVDT 237
N TL L+R GR+++ P + R+ + K I ++ + + IVKL D
Sbjct: 278 ATNRPDTLDPALLRPGRLDRKIHIELPNEQARLDILKIHSSPITKHGEIDFEAIVKLSDG 337
Query: 238 FPGQSI 243
F G +
Sbjct: 338 FNGADL 343
>gi|448494769|ref|ZP_21609584.1| proteasome-activating nucleotidase [Halorubrum californiensis DSM
19288]
gi|445688992|gb|ELZ41238.1| proteasome-activating nucleotidase [Halorubrum californiensis DSM
19288]
Length = 405
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 51/190 (26%), Positives = 83/190 (43%), Gaps = 17/190 (8%)
Query: 56 IKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 115
I+ P + ++G G GK+ + V + I M+ EL GE AKL+R +
Sbjct: 180 IQPPSGVLLYGPPGTGKTMLAKAVANETDATFIKMAGSELVHKFIGEGAKLVRDLF---- 235
Query: 116 DIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEE 175
++ ++ + L I+++DA A + T T + V T+M + L M +E
Sbjct: 236 EVARENQPAVLFIDEIDAIASKR--TDSKTSGDAEVQRTMMQL--------LSEMDGFDE 285
Query: 176 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPT--REDRIGVCKGIFRNDNVADD-DIV 232
V II N F L ++R GR ++ P E R + + RN N+AD D
Sbjct: 286 RGEVRIIAATNRFDMLDPAILRPGRFDRLIEVPKPETEGREIIFQIHTRNMNLADGVDFA 345
Query: 233 KLVDTFPGQS 242
+L + P S
Sbjct: 346 ELAELTPDAS 355
>gi|448328071|ref|ZP_21517387.1| proteasome-activating nucleotidase [Natrinema versiforme JCM 10478]
gi|445616666|gb|ELY70286.1| proteasome-activating nucleotidase [Natrinema versiforme JCM 10478]
Length = 405
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 46/168 (27%), Positives = 73/168 (43%), Gaps = 16/168 (9%)
Query: 64 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 123
++G G GK+ + V + I M+ EL GE AKL+R + D+ ++ +
Sbjct: 188 LYGPPGTGKTMLAKAVANQTDATFIKMAGSELVHKFIGEGAKLVRDLF----DVAREHEP 243
Query: 124 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 183
+ I+++DA A + T T + V T+M + L M EE + II
Sbjct: 244 AVIFIDEIDAIAAKR--TESKTSGDAEVQRTMMQL--------LSEMDGFEERGEIRIIA 293
Query: 184 TGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCKGIFRNDNVADD 229
N F L ++R GR ++ P E R + + R NVADD
Sbjct: 294 ATNRFDMLDRAILRPGRFDRLIEVPKPNAEGREIIFEIHTRGMNVADD 341
>gi|410928215|ref|XP_003977496.1| PREDICTED: 26S protease regulatory subunit 10B-like isoform 1
[Takifugu rubripes]
Length = 389
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 46/186 (24%), Positives = 88/186 (47%), Gaps = 20/186 (10%)
Query: 64 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 123
++G G GK+ V +++ N + + + + GE A+LIR+ + A D +
Sbjct: 172 LYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIREMFNYARD----HQP 227
Query: 124 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 183
C + ++++DA GR ++ T ++ + TLM + + Q+ G + RV +I+
Sbjct: 228 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGF---DTLHRVKMIM 277
Query: 184 TGNDFSTLYAPLIRDGRMEK--FYWAPTREDRIGVCK----GIFRNDNVADDDIVKLVDT 237
N TL L+R GR+++ P + R+ + K I ++ + + IVKL D
Sbjct: 278 ATNRPDTLDPALLRPGRLDRKIHIELPNEQARLDILKIHSSPITKHGEIDYEAIVKLSDG 337
Query: 238 FPGQSI 243
F G +
Sbjct: 338 FNGADL 343
>gi|119184765|ref|XP_001243250.1| hypothetical protein CIMG_07146 [Coccidioides immitis RS]
Length = 697
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 67/275 (24%), Positives = 120/275 (43%), Gaps = 33/275 (12%)
Query: 40 DKLVVHITK-NFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESG 98
D +V+ +T+ S ++ P + + G G GK+ A++G+ I +SA + SG
Sbjct: 188 DLIVLPMTRPQVYSSSKVQPPRGVLLHGPPGCGKTLIANAFAAELGVPFIAISAPSIVSG 247
Query: 99 NAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNI 158
+GE K +R+ + EA KK C + I+++DA + + Q + ++V L
Sbjct: 248 MSGESEKALREHFDEA----KKAAPCLVFIDEIDAITPKR-ESAQREMEKRIVAQLL--- 299
Query: 159 ADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKF--YWAPTREDRIGV 216
TC+ + + P V ++ N +L L R GR +K P+ R +
Sbjct: 300 ----TCMDDLALEKTDGKP-VIVLAATNRPDSLDPALRRGGRFDKEINLSVPSEPVREQI 354
Query: 217 CKGIFRNDNVADD-DIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISGVGVGSIGKSLV 275
+ + RN N+A+ D L PG F GA ++ +S G +I + L
Sbjct: 355 LRTLTRNMNLANGLDFPLLAKRTPG----FVGA--------DLNDLVSTAGTAAIKRYLD 402
Query: 276 NSKEAAPT---FEQPRMTME-KLLEYGNMIVQEQE 306
+ K E+P+ + K+LE +I + +E
Sbjct: 403 HLKSLGDEEMDIEEPQSNISPKILELRRLIRRARE 437
Score = 39.3 bits (90), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 38/167 (22%), Positives = 69/167 (41%), Gaps = 18/167 (10%)
Query: 56 IKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 115
I P + +WG G GK+ + V + N I + EL + GE + +RQ + A
Sbjct: 510 ISAPTGVLLWGPPGCGKTLLAKAVANESRANFISVKGPELLNKYVGESERAVRQVFVRAR 569
Query: 116 DIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEE 175
I C + ++LDA R T + ++VN L + + Q G+Y
Sbjct: 570 SSIP----CVIFFDELDALVPRRDDTLS-EASARVVNTLLTELDGLGSARQ--GIY---- 618
Query: 176 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCKGI 220
+I N + ++R GR+E + P+ +R+ + + +
Sbjct: 619 -----VIAATNRPDIIDPAMLRPGRLETLLFVNLPSENERVDILRTL 660
>gi|432945585|ref|XP_004083671.1| PREDICTED: 26S protease regulatory subunit 10B-like [Oryzias
latipes]
Length = 377
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 46/186 (24%), Positives = 88/186 (47%), Gaps = 20/186 (10%)
Query: 64 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 123
++G G GK+ V +++ N + + + + GE A+LIR+ + A D +
Sbjct: 160 LYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIREMFNYARD----HQP 215
Query: 124 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 183
C + ++++DA GR ++ T ++ + TLM + + Q+ G + RV +I+
Sbjct: 216 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGF---DTLHRVKMIM 265
Query: 184 TGNDFSTLYAPLIRDGRMEK--FYWAPTREDRIGVCK----GIFRNDNVADDDIVKLVDT 237
N TL L+R GR+++ P + R+ + K I ++ + + IVKL D
Sbjct: 266 ATNRPDTLDPALLRPGRLDRKIHIELPNEQARLDILKIHSSPITKHGEIDYEAIVKLSDG 325
Query: 238 FPGQSI 243
F G +
Sbjct: 326 FNGADL 331
>gi|164663143|ref|XP_001732693.1| hypothetical protein MGL_0468 [Malassezia globosa CBS 7966]
gi|159106596|gb|EDP45479.1| hypothetical protein MGL_0468 [Malassezia globosa CBS 7966]
Length = 382
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 49/194 (25%), Positives = 91/194 (46%), Gaps = 20/194 (10%)
Query: 56 IKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 115
IK P + ++G G GK+ V A + N + + A + GE A+L+R+ + A
Sbjct: 157 IKSPKGVLLYGPPGTGKTLLARAVAATLDTNFLKVVASAIVDKYIGESARLVREMFAYA- 215
Query: 116 DIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEE 175
K + C + ++++DA GR ++ T ++ + TLM + + Q+ G ++
Sbjct: 216 ---KTKEPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGF---DQ 262
Query: 176 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCK----GIFRNDNVADD 229
+ +I+ N TL L+R GR+++ P + R+ + K I + D + +
Sbjct: 263 LGKTKVIMATNRPDTLDPALLRPGRIDRKIEIPLPNEQSRLEILKIHTRPIAKRDELDYE 322
Query: 230 DIVKLVDTFPGQSI 243
IVKL D F G +
Sbjct: 323 AIVKLSDGFNGADL 336
>gi|406700181|gb|EKD03362.1| ATPase [Trichosporon asahii var. asahii CBS 8904]
Length = 399
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 47/194 (24%), Positives = 93/194 (47%), Gaps = 20/194 (10%)
Query: 56 IKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 115
IK P + ++G G GK+ V A + N + + + + GE A+L+R+ + A
Sbjct: 174 IKPPKGVLLYGPPGTGKTLLARAVAATLNTNFLKVVSSAIVDKYIGESARLVREMFAYA- 232
Query: 116 DIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEE 175
++ + C + ++++DA GR ++ T ++ + TLM + + Q+ G +
Sbjct: 233 ---REHEPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGF---DS 279
Query: 176 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGV----CKGIFRNDNVADD 229
R +I+ N TL L+R GR+++ P + R+ + KGI ++ ++ +
Sbjct: 280 LGRTKLIMATNRPDTLDPALLRPGRLDRKIEIPLPNEQGRLEILKIHAKGINKSGDIDYE 339
Query: 230 DIVKLVDTFPGQSI 243
+VKL D F G +
Sbjct: 340 AVVKLSDGFNGADL 353
>gi|356502624|ref|XP_003520118.1| PREDICTED: cell division control protein 48 homolog B-like [Glycine
max]
Length = 606
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/177 (23%), Positives = 75/177 (42%), Gaps = 14/177 (7%)
Query: 44 VHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEP 103
+H + L +K P L ++G G GK+ V + G + ++S + +AGE
Sbjct: 34 LHFSHQAQKL-GLKWPRGLLLYGPPGTGKTSLVRAVVRECGAHLTVISPHSVHRAHAGES 92
Query: 104 AKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPT 163
+++R+ + EA+ + GK + I+++DA R + V TLM+ ++ PT
Sbjct: 93 ERILREAFSEASSHVALGKPSVIFIDEIDALCARRDSKREQDVRVASQLFTLMD-SNKPT 151
Query: 164 CVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRM--EKFYWAPTREDRIGVCK 218
P V ++ + N + L R GR E P +DR + K
Sbjct: 152 F----------STPGVVVVASTNRVDAIDPALRRSGRFDAEIEVTVPNEDDRFQILK 198
>gi|49258183|gb|AAH73644.1| Psmc6 protein, partial [Xenopus laevis]
Length = 392
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 46/186 (24%), Positives = 88/186 (47%), Gaps = 20/186 (10%)
Query: 64 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 123
++G G GK+ V +++ N + + + + GE A+LIR+ + A D +
Sbjct: 175 LYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIREMFNYARD----HQP 230
Query: 124 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 183
C + ++++DA GR ++ T ++ + TLM + + Q+ G + RV +I+
Sbjct: 231 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGF---DTLHRVKMIM 280
Query: 184 TGNDFSTLYAPLIRDGRMEK--FYWAPTREDRIGVCK----GIFRNDNVADDDIVKLVDT 237
N TL L+R GR+++ P + R+ + K I ++ + + IVKL D
Sbjct: 281 ATNRPDTLDPALLRPGRLDRKIHIELPNEQARLDILKIHAGPITKHGEIDYEAIVKLSDG 340
Query: 238 FPGQSI 243
F G +
Sbjct: 341 FNGADL 346
>gi|28278099|gb|AAH45087.1| Psmc6 protein, partial [Xenopus laevis]
Length = 403
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 46/186 (24%), Positives = 88/186 (47%), Gaps = 20/186 (10%)
Query: 64 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 123
++G G GK+ V +++ N + + + + GE A+LIR+ + A D +
Sbjct: 186 LYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIREMFNYARD----HQP 241
Query: 124 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 183
C + ++++DA GR ++ T ++ + TLM + + Q+ G + RV +I+
Sbjct: 242 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGF---DTLHRVKMIM 291
Query: 184 TGNDFSTLYAPLIRDGRMEK--FYWAPTREDRIGVCK----GIFRNDNVADDDIVKLVDT 237
N TL L+R GR+++ P + R+ + K I ++ + + IVKL D
Sbjct: 292 ATNRPDTLDPALLRPGRLDRKIHIELPNEQARLDILKIHAGPITKHGEIDYEAIVKLSDG 351
Query: 238 FPGQSI 243
F G +
Sbjct: 352 FNGADL 357
>gi|148225468|ref|NP_001090469.1| proteasome (prosome, macropain) 26S subunit, ATPase, 6 [Xenopus
laevis]
gi|67677964|gb|AAH97594.1| MGC114813 protein [Xenopus laevis]
Length = 389
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 46/186 (24%), Positives = 88/186 (47%), Gaps = 20/186 (10%)
Query: 64 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 123
++G G GK+ V +++ N + + + + GE A+LIR+ + A D +
Sbjct: 172 LYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIREMFNYARD----HQP 227
Query: 124 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 183
C + ++++DA GR ++ T ++ + TLM + + Q+ G + RV +I+
Sbjct: 228 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGF---DTLHRVKMIM 277
Query: 184 TGNDFSTLYAPLIRDGRMEK--FYWAPTREDRIGVCK----GIFRNDNVADDDIVKLVDT 237
N TL L+R GR+++ P + R+ + K I ++ + + IVKL D
Sbjct: 278 ATNRPDTLDPALLRPGRLDRKIHIELPNEQARLDILKIHAGPITKHGEIDYEAIVKLSDG 337
Query: 238 FPGQSI 243
F G +
Sbjct: 338 FNGADL 343
>gi|448532164|ref|ZP_21621238.1| proteasome-activating nucleotidase [Halorubrum hochstenium ATCC
700873]
gi|445706780|gb|ELZ58654.1| proteasome-activating nucleotidase [Halorubrum hochstenium ATCC
700873]
Length = 405
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 51/190 (26%), Positives = 83/190 (43%), Gaps = 17/190 (8%)
Query: 56 IKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 115
I+ P + ++G G GK+ + V + I M+ EL GE AKL+R +
Sbjct: 180 IQPPSGVLLYGPPGTGKTMLAKAVANETDATFIKMAGSELVHKFIGEGAKLVRDLF---- 235
Query: 116 DIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEE 175
++ ++ + L I+++DA A + T T + V T+M + L M +E
Sbjct: 236 EVARENQPAVLFIDEIDAIASKR--TDSKTSGDAEVQRTMMQL--------LSEMDGFDE 285
Query: 176 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRED--RIGVCKGIFRNDNVADD-DIV 232
V II N F L ++R GR ++ P E R + + RN N+AD D
Sbjct: 286 RGEVRIIAATNRFDMLDPAILRPGRFDRLIEVPKPETAGREIIFQIHTRNMNLADGVDFA 345
Query: 233 KLVDTFPGQS 242
+L + P S
Sbjct: 346 ELAELTPDAS 355
>gi|448382766|ref|ZP_21562261.1| proteasome-activating nucleotidase [Haloterrigena thermotolerans
DSM 11522]
gi|445661235|gb|ELZ14026.1| proteasome-activating nucleotidase [Haloterrigena thermotolerans
DSM 11522]
Length = 405
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 46/168 (27%), Positives = 73/168 (43%), Gaps = 16/168 (9%)
Query: 64 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 123
++G G GK+ + V + I M+ EL GE AKL+R + D+ ++ +
Sbjct: 188 LYGPPGTGKTMLAKAVANQTDATFIKMAGSELVHKFIGEGAKLVRDLF----DVAREHEP 243
Query: 124 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 183
+ I+++DA A + T T + V T+M + L M EE + II
Sbjct: 244 AVIFIDEIDAIAAKR--TESKTSGDAEVQRTMMQL--------LSEMDGFEERGEIRIIA 293
Query: 184 TGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCKGIFRNDNVADD 229
N F L ++R GR ++ P E R + + R NVADD
Sbjct: 294 ATNRFDMLDRAILRPGRFDRLIEVPKPNAEGREIIFEIHTRGMNVADD 341
>gi|428217192|ref|YP_007101657.1| AAA ATPase [Pseudanabaena sp. PCC 7367]
gi|427988974|gb|AFY69229.1| AAA ATPase central domain protein [Pseudanabaena sp. PCC 7367]
Length = 503
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 50/201 (24%), Positives = 86/201 (42%), Gaps = 30/201 (14%)
Query: 53 LPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIM-MSAGELESGNAGEPAKLIRQRY 111
LPN K L++GI +G GKS C A + P++ + G L G+ R
Sbjct: 260 LPNPKGVLLMGI---QGTGKSL-CAKAIAHLWRLPLLRLDVGRLFGSLVGQSES----RT 311
Query: 112 REAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMY 171
R+ + + C L ++++D MGGT+ + +Q V TL+ +
Sbjct: 312 RQTIQLTEALAPCILWMDEIDKAFAGMGGTSTDSGTSQRVFGTLLT-------------W 358
Query: 172 NKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW-----APTREDRIGVCKGIFRNDNV 226
+E++ V ++ T N+ + L L+R GR ++ ++ RE V FR +
Sbjct: 359 MQEKSSPVFVVATANNINALPPELLRKGRFDEIFFINLPSQAEREQIFMVHLQRFRPATL 418
Query: 227 ADDDI---VKLVDTFPGQSID 244
D D+ +L F G I+
Sbjct: 419 RDFDVEHLAQLAAEFSGAEIE 439
>gi|414078652|ref|YP_006997970.1| AAA ATPase [Anabaena sp. 90]
gi|413972068|gb|AFW96157.1| AAA ATPase [Anabaena sp. 90]
Length = 532
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/169 (24%), Positives = 80/169 (47%), Gaps = 23/169 (13%)
Query: 53 LPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYR 112
LP+ K L+ GI +G GKS + + A+ + + + G L G GE IRQ +
Sbjct: 277 LPSPKGVLLAGI---QGTGKSLSAKTIAAEWKLPLLRLDVGRLFGGIVGESESRIRQVIK 333
Query: 113 EAADIIKKGKMCCLMINDLDAGAGRMG-GTTQYTVNNQMVNATLMNIADNPTCVQLPGMY 171
+++ C L I++ D G + GT + ++ V +L+ +
Sbjct: 334 ----LVEAIAPCVLFIDEADKAFGNVNTGTDGDSGTSRRVFGSLIT-------------W 376
Query: 172 NKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCK 218
+E+ V I++T N+ L A L+R GR+++ +W P +++R+ + +
Sbjct: 377 MQEKVSPVFIVLTANNVEILPAELLRKGRLDEIFWLNLPNQKERLQIFR 425
>gi|45361531|ref|NP_989342.1| proteasome (prosome, macropain) 26S subunit, ATPase, 6 [Xenopus
(Silurana) tropicalis]
gi|39850228|gb|AAH64227.1| proteasome (prosome, macropain) 26S subunit, ATPase, 6 [Xenopus
(Silurana) tropicalis]
gi|89266829|emb|CAJ83423.1| proteasome (prosome, macropain) 26S subunit, ATPase, 6 [Xenopus
(Silurana) tropicalis]
Length = 389
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 46/186 (24%), Positives = 88/186 (47%), Gaps = 20/186 (10%)
Query: 64 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 123
++G G GK+ V +++ N + + + + GE A+LIR+ + A D +
Sbjct: 172 LYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIREMFNYARD----HQP 227
Query: 124 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 183
C + ++++DA GR ++ T ++ + TLM + + Q+ G + RV +I+
Sbjct: 228 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGF---DTLHRVKMIM 277
Query: 184 TGNDFSTLYAPLIRDGRMEK--FYWAPTREDRIGVCK----GIFRNDNVADDDIVKLVDT 237
N TL L+R GR+++ P + R+ + K I ++ + + IVKL D
Sbjct: 278 ATNRPDTLDPALLRPGRLDRKIHIELPNEQARLDILKIHAGPITKHGEIDYEAIVKLSDG 337
Query: 238 FPGQSI 243
F G +
Sbjct: 338 FNGADL 343
>gi|302772841|ref|XP_002969838.1| hypothetical protein SELMODRAFT_171164 [Selaginella moellendorffii]
gi|302806886|ref|XP_002985174.1| hypothetical protein SELMODRAFT_157152 [Selaginella moellendorffii]
gi|300147002|gb|EFJ13668.1| hypothetical protein SELMODRAFT_157152 [Selaginella moellendorffii]
gi|300162349|gb|EFJ28962.1| hypothetical protein SELMODRAFT_171164 [Selaginella moellendorffii]
Length = 398
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 49/194 (25%), Positives = 92/194 (47%), Gaps = 20/194 (10%)
Query: 56 IKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 115
IK P + ++G G GK+ + + + N + + + + GE A+LIR+ + A
Sbjct: 169 IKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIVDKYIGESARLIREMFGYAR 228
Query: 116 DIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEE 175
D + C + ++++DA GR ++ T ++ + TLM + + QL G ++
Sbjct: 229 D----HQPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QLDGF---DQ 274
Query: 176 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCK----GIFRNDNVADD 229
+V +I+ N L L+R GR+++ P + RI V K GI ++ + +
Sbjct: 275 LGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQGRIEVLKIHSAGILKHGEIDYE 334
Query: 230 DIVKLVDTFPGQSI 243
IVKL + F G +
Sbjct: 335 AIVKLAEGFNGADL 348
>gi|448306329|ref|ZP_21496237.1| proteasome-activating nucleotidase [Natronorubrum bangense JCM
10635]
gi|445598388|gb|ELY52447.1| proteasome-activating nucleotidase [Natronorubrum bangense JCM
10635]
Length = 405
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 45/168 (26%), Positives = 74/168 (44%), Gaps = 16/168 (9%)
Query: 64 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 123
++G G GK+ + V + I M+ EL GE AKL+R ++ + ++ +
Sbjct: 188 LYGPPGTGKTMLAKAVANQTDATFIKMAGSELVHKFIGEGAKLVRDLFK----VAREHEP 243
Query: 124 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 183
+ I+++DA A + T T + V T+M + L M EE + II
Sbjct: 244 AVIFIDEIDAIAAKR--TESKTSGDAEVQRTMMQL--------LSEMDGFEERGEIRIIA 293
Query: 184 TGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCKGIFRNDNVADD 229
N F L ++R GR ++ P +E R + + R NVADD
Sbjct: 294 ATNRFDMLDRAILRPGRFDRLIEVPKPNQEGREIIFEIHTRGMNVADD 341
>gi|119496141|ref|XP_001264844.1| AAA family ATPase/60S ribosome export protein Rix7, putative
[Neosartorya fischeri NRRL 181]
gi|119413006|gb|EAW22947.1| AAA family ATPase/60S ribosome export protein Rix7, putative
[Neosartorya fischeri NRRL 181]
Length = 736
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 56/214 (26%), Positives = 98/214 (45%), Gaps = 23/214 (10%)
Query: 40 DKLVVHITKN--FMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELES 97
D L++ +T+ F+S N++ P + + G G GK+ A++G+ I +SA + S
Sbjct: 186 DLLILPMTRPQVFVS-SNVQPPRGVLLHGPPGCGKTMIANAFAAELGVPFIPISAPSIVS 244
Query: 98 GNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMN 157
G +GE K +R+ + EA ++ C + I+++DA + + Q + ++V L
Sbjct: 245 GMSGESEKALREHFEEA----RRLAPCLIFIDEIDAITPKR-ESAQREMEKRIVAQLL-- 297
Query: 158 IADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKF--YWAPTREDRIG 215
TC+ + + P V ++ N +L A L R GR +K P+ R
Sbjct: 298 -----TCMDDLALDKTDGKP-VIVLAATNRPDSLDAALRRGGRFDKEINMTVPSEPVREQ 351
Query: 216 VCKGIFRNDNVADD-DIVKLVDTFPGQSIDFFGA 248
+ + + R +ADD D L PG F GA
Sbjct: 352 ILRALTRKMRLADDLDFKTLAKRTPG----FVGA 381
>gi|396460518|ref|XP_003834871.1| similar to AAA family ATPase/60S ribosome export protein Rix7
[Leptosphaeria maculans JN3]
gi|312211421|emb|CBX91506.1| similar to AAA family ATPase/60S ribosome export protein Rix7
[Leptosphaeria maculans JN3]
Length = 729
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/183 (24%), Positives = 79/183 (43%), Gaps = 23/183 (12%)
Query: 56 IKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 115
I P + +WG G GK+ + V A+ N I + EL + GE + +RQ + A
Sbjct: 499 ISAPTGVLLWGPPGCGKTLLAKAVAAESKANFISVKGPELLNKYVGESERALRQLFMRAR 558
Query: 116 DIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEE 175
+ C + +++DA R T + + ++VN L +L G+
Sbjct: 559 SSVP----CVIFFDEIDALVPRR-STELHEASARVVNTLL---------TELDGL----- 599
Query: 176 NPR--VPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCKGIFRNDNVADDDI 231
NPR + +I N + ++R GR+E + P E+R+G+ K + + D +
Sbjct: 600 NPRQGIYLIAATNRPEMIDEAMLRPGRLETLLYVELPKPEERVGILKALIQQGGAMDIAL 659
Query: 232 VKL 234
+L
Sbjct: 660 AEL 662
>gi|401886263|gb|EJT50312.1| ATPase [Trichosporon asahii var. asahii CBS 2479]
Length = 403
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 47/194 (24%), Positives = 93/194 (47%), Gaps = 20/194 (10%)
Query: 56 IKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 115
IK P + ++G G GK+ V A + N + + + + GE A+L+R+ + A
Sbjct: 178 IKPPKGVLLYGPPGTGKTLLARAVAATLNTNFLKVVSSAIVDKYIGESARLVREMFAYA- 236
Query: 116 DIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEE 175
++ + C + ++++DA GR ++ T ++ + TLM + + Q+ G +
Sbjct: 237 ---REHEPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGF---DS 283
Query: 176 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGV----CKGIFRNDNVADD 229
R +I+ N TL L+R GR+++ P + R+ + KGI ++ ++ +
Sbjct: 284 LGRTKLIMATNRPDTLDPALLRPGRLDRKIEIPLPNEQGRLEILKIHAKGINKSGDIDYE 343
Query: 230 DIVKLVDTFPGQSI 243
+VKL D F G +
Sbjct: 344 AVVKLSDGFNGADL 357
>gi|383830124|ref|ZP_09985213.1| AAA+ family ATPase [Saccharomonospora xinjiangensis XJ-54]
gi|383462777|gb|EID54867.1| AAA+ family ATPase [Saccharomonospora xinjiangensis XJ-54]
Length = 747
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/169 (23%), Positives = 74/169 (43%), Gaps = 20/169 (11%)
Query: 64 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 123
I+G G GK+F + +N + EL GE + +R+ +R+AA+
Sbjct: 526 IYGPPGNGKTFLVRALAGTGALNVFSVKGAELMDKWVGESERAVRELFRKAAE----AAP 581
Query: 124 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 183
+ ++++DA R G ++ ++++V A L + + E R ++V
Sbjct: 582 SLIFLDEVDALVPRRGQSSDSGASDRVVAALLTEL-------------DGVEPLRDVVVV 628
Query: 184 TGNDFSTLYAP-LIRDGRMEKFYWAPT--REDRIGVCKGIFRNDNVADD 229
+ L P L+R GR+E+ + P E R + + RN +ADD
Sbjct: 629 GATNRPELVDPALLRPGRLERLIYVPPPDAEARAQILRASARNTPLADD 677
>gi|126465619|ref|YP_001040728.1| ATPase AAA [Staphylothermus marinus F1]
gi|126014442|gb|ABN69820.1| AAA family ATPase, CDC48 subfamily [Staphylothermus marinus F1]
Length = 738
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 56/214 (26%), Positives = 96/214 (44%), Gaps = 25/214 (11%)
Query: 56 IKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 115
IK P + ++G G GK+ + V + G N I + E+ S GE K IR+ +R+A
Sbjct: 494 IKPPRGILLYGPPGTGKTLLAKAVATESGANFIAVRGPEILSKWVGESEKAIREIFRKA- 552
Query: 116 DIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEE 175
+ + +++DA A G V ++V+ L ++ G+ N+ +
Sbjct: 553 ---RLYAPAVIFFDEIDAIAPARGYAFDSRVTERIVSQLL---------TEMDGI-NRLD 599
Query: 176 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRE--DRIGVCKGIFRNDNVADD---- 229
N V +I N L L+R GR +K + P + RI + K RN +ADD
Sbjct: 600 N--VVVIAATNRPDILDPALLRPGRFDKLIYVPPPDLNGRIEILKIHTRNMPLADDVDLY 657
Query: 230 DIVKLVDTFPGQSIDFF---GALRARVYDDEVRK 260
+I +L + + G ++ A+RA + E+ K
Sbjct: 658 EIARLTEGYSGADLEALVREAAMRALKENIEINK 691
>gi|294495131|ref|YP_003541624.1| proteasome-activating nucleotidase [Methanohalophilus mahii DSM
5219]
gi|292666130|gb|ADE35979.1| Proteasome-activating nucleotidase [Methanohalophilus mahii DSM
5219]
Length = 408
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 50/182 (27%), Positives = 81/182 (44%), Gaps = 17/182 (9%)
Query: 64 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 123
++G G GK+ + V ++ + I MS +L GE A+L++ ++ A D
Sbjct: 192 MYGDPGTGKTLIAKAVASRAHASFIRMSGSDLVQKFIGEGARLVKDVFQMARD----KSP 247
Query: 124 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 183
C L I+++DA G T T + VN T++ + L M E +V II
Sbjct: 248 CILFIDEIDAVGGMR--THDGTTGSAEVNRTMLQL--------LSEMDGFEPRGQVKIIA 297
Query: 184 TGNDFSTLYAPLIRDGRMEKFYWAPTRED--RIGVCKGIFRNDNVADD-DIVKLVDTFPG 240
N L L+R GR ++ P ++ R + + R+ N+ADD D+ KL G
Sbjct: 298 ATNRIDLLDPALLRPGRFDRVIEIPIPDEKAREDILRIHTRHMNLADDVDMAKLAKMANG 357
Query: 241 QS 242
S
Sbjct: 358 LS 359
>gi|34783985|gb|AAH57997.1| Psmc6 protein, partial [Mus musculus]
Length = 382
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 46/186 (24%), Positives = 88/186 (47%), Gaps = 20/186 (10%)
Query: 64 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 123
++G G GK+ V +++ N + + + + GE A+LIR+ + A D +
Sbjct: 165 LYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIREMFNYARD----HQP 220
Query: 124 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 183
C + ++++DA GR ++ T ++ + TLM + + Q+ G + RV +I+
Sbjct: 221 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGF---DTLHRVKMIM 270
Query: 184 TGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCK----GIFRNDNVADDDIVKLVDT 237
N TL L+R GR+++ P + R+ + K I ++ + + IVKL D
Sbjct: 271 ATNRPDTLDPALLRPGRLDRKIHIDLPNEQARLDILKIHAGPITKHGEIDYEAIVKLSDG 330
Query: 238 FPGQSI 243
F G +
Sbjct: 331 FNGADL 336
>gi|19263883|gb|AAH25134.1| Psmc6 protein, partial [Mus musculus]
Length = 293
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 46/186 (24%), Positives = 87/186 (46%), Gaps = 20/186 (10%)
Query: 64 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 123
++G G GK+ V +++ N + + + + GE A+LIR+ + A D +
Sbjct: 76 LYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIREMFNYARD----HQP 131
Query: 124 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 183
C + ++++DA GR ++ T ++ + TLM + + Q+ G RV +I+
Sbjct: 132 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGFDTLH---RVKMIM 181
Query: 184 TGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCK----GIFRNDNVADDDIVKLVDT 237
N TL L+R GR+++ P + R+ + K I ++ + + IVKL D
Sbjct: 182 ATNRPDTLDPALLRPGRLDRKIHIDLPNEQARLDILKIHAGPITKHGEIDYEAIVKLSDG 241
Query: 238 FPGQSI 243
F G +
Sbjct: 242 FNGADL 247
>gi|449278480|gb|EMC86302.1| 26S protease regulatory subunit S10B, partial [Columba livia]
Length = 361
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 46/186 (24%), Positives = 88/186 (47%), Gaps = 20/186 (10%)
Query: 64 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 123
++G G GK+ V +++ N + + + + GE A+LIR+ + A D +
Sbjct: 144 LYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIREMFNYARD----HQP 199
Query: 124 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 183
C + ++++DA GR ++ T ++ + TLM + + Q+ G + RV +I+
Sbjct: 200 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGF---DTLHRVKMIM 249
Query: 184 TGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCK----GIFRNDNVADDDIVKLVDT 237
N TL L+R GR+++ P + R+ + K I ++ + + IVKL D
Sbjct: 250 ATNRPDTLDPALLRPGRLDRKIHIDLPNEQARLDILKIHAGPITKHGEIDYEAIVKLSDG 309
Query: 238 FPGQSI 243
F G +
Sbjct: 310 FNGADL 315
>gi|81294202|gb|AAI07951.1| Psmc6 protein [Rattus norvegicus]
Length = 381
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 46/186 (24%), Positives = 88/186 (47%), Gaps = 20/186 (10%)
Query: 64 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 123
++G G GK+ V +++ N + + + + GE A+LIR+ + A D +
Sbjct: 164 LYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIREMFNYARD----HQP 219
Query: 124 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 183
C + ++++DA GR ++ T ++ + TLM + + Q+ G + RV +I+
Sbjct: 220 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGF---DTLHRVKMIM 269
Query: 184 TGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCK----GIFRNDNVADDDIVKLVDT 237
N TL L+R GR+++ P + R+ + K I ++ + + IVKL D
Sbjct: 270 ATNRPDTLDPALLRPGRLDRKIHIDLPNEQARLDILKIHAGPITKHGEIDYEAIVKLSDG 329
Query: 238 FPGQSI 243
F G +
Sbjct: 330 FNGADL 335
>gi|327286230|ref|XP_003227834.1| PREDICTED: 26S protease regulatory subunit 10B-like, partial
[Anolis carolinensis]
Length = 382
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 46/186 (24%), Positives = 88/186 (47%), Gaps = 20/186 (10%)
Query: 64 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 123
++G G GK+ V +++ N + + + + GE A+LIR+ + A D +
Sbjct: 165 LYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIREMFNYARD----HQP 220
Query: 124 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 183
C + ++++DA GR ++ T ++ + TLM + + Q+ G + RV +I+
Sbjct: 221 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGF---DTLHRVKMIM 270
Query: 184 TGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCK----GIFRNDNVADDDIVKLVDT 237
N TL L+R GR+++ P + R+ + K I ++ + + IVKL D
Sbjct: 271 ATNRPDTLDPALLRPGRLDRKIHIDLPNEQARLDILKIHAGPITKHGEIDYEAIVKLSDG 330
Query: 238 FPGQSI 243
F G +
Sbjct: 331 FNGADL 336
>gi|448617268|ref|ZP_21665923.1| proteasome-activating nucleotidase [Haloferax mediterranei ATCC
33500]
gi|445748617|gb|EMA00064.1| proteasome-activating nucleotidase [Haloferax mediterranei ATCC
33500]
Length = 412
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 59/234 (25%), Positives = 101/234 (43%), Gaps = 26/234 (11%)
Query: 56 IKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 115
I P + ++G G GK+ + V + + I M+ EL GE A+L+R ++ AA
Sbjct: 183 IDPPAGVLLYGPPGTGKTMLAKAVANETNASFIKMAGSELVQKFIGEGARLVRDLFKLAA 242
Query: 116 DIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEE 175
+ + + I+++DA A + T T + V T+M + L M ++
Sbjct: 243 ----EREPVVIFIDEIDAVASKR--TDSKTSGDAEVQRTMMQL--------LSEMDGFDD 288
Query: 176 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCKGIFRNDNVADDDIVK 233
+ II N F L ++R GR ++ P E R + R+ NVADD V
Sbjct: 289 RGEIRIIAATNRFDMLDEAILRPGRFDRLIEVPKPAVEGRRRILDIHTRDMNVADD--VN 346
Query: 234 LVDTFPGQSIDFFGALRARVYDD-------EVRKWISGVGVGSIGKSLVNSKEA 280
L D + D+ GA A + + + R ++GV + + L N +E+
Sbjct: 347 L-DALADELDDYSGADIASLTTEAGMFAIRDGRTEVTGVDFDAAHEKLTNVEES 399
>gi|448310565|ref|ZP_21500381.1| proteasome-activating nucleotidase [Natronolimnobius
innermongolicus JCM 12255]
gi|445607712|gb|ELY61588.1| proteasome-activating nucleotidase [Natronolimnobius
innermongolicus JCM 12255]
Length = 405
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 45/168 (26%), Positives = 74/168 (44%), Gaps = 16/168 (9%)
Query: 64 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 123
++G G GK+ + V + I M+ EL GE AKL+R + D+ ++ +
Sbjct: 188 LYGPPGTGKTMLAKAVANETNATFIKMAGSELVHKFIGEGAKLVRDLF----DVAREHEP 243
Query: 124 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 183
+ I+++DA A + T T + V T+M + L M EE + II
Sbjct: 244 AVIFIDEIDAIAAKR--TESKTSGDAEVQRTMMQL--------LSEMDGFEERGEIRIIA 293
Query: 184 TGNDFSTLYAPLIRDGRMEKFYWAPT--REDRIGVCKGIFRNDNVADD 229
N F L ++R GR ++ P E R + + R+ NVAD+
Sbjct: 294 ATNRFDMLDRAILRPGRFDRLIEVPKPDAEGRELIFQIHTRDMNVADE 341
>gi|448482363|ref|ZP_21605484.1| proteasome-activating nucleotidase [Halorubrum arcis JCM 13916]
gi|445821427|gb|EMA71219.1| proteasome-activating nucleotidase [Halorubrum arcis JCM 13916]
Length = 405
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 49/182 (26%), Positives = 79/182 (43%), Gaps = 17/182 (9%)
Query: 64 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 123
++G G GK+ + V + I M+ EL GE AKL+R + ++ ++ +
Sbjct: 188 LYGPPGTGKTMLAKAVANETDATFIKMAGSELVHKFIGEGAKLVRDLF----EVARENQP 243
Query: 124 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 183
L I+++DA A + T T + V T+M + L M +E V II
Sbjct: 244 AVLFIDEIDAIASKR--TDSKTSGDAEVQRTMMQL--------LSEMDGFDERGEVRIIA 293
Query: 184 TGNDFSTLYAPLIRDGRMEKFYWAPT--REDRIGVCKGIFRNDNVADD-DIVKLVDTFPG 240
N F L ++R GR ++ P E R + + RN N+AD D +L + P
Sbjct: 294 ATNRFDMLDPAILRPGRFDRLIEVPKPETEGREIIFQIHTRNMNLADGVDFAELAELTPD 353
Query: 241 QS 242
S
Sbjct: 354 AS 355
>gi|397671724|ref|YP_006513259.1| AAA ATPase [Propionibacterium propionicum F0230a]
gi|395141804|gb|AFN45911.1| ATPase, AAA family [Propionibacterium propionicum F0230a]
Length = 514
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 55/223 (24%), Positives = 92/223 (41%), Gaps = 49/223 (21%)
Query: 66 GGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCC 125
G G GKS + + ++ G+ + + G+ R REA ++ C
Sbjct: 273 GVPGCGKSLSAKAIASQWGLPLYRLDMASVLGMYVGQS----EGRLREALATAERVAPCV 328
Query: 126 LMINDLDAG--AGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 183
L I++++ G G GGTT+ + + + +E +V ++
Sbjct: 329 LWIDEIEKGLAQGSDGGTTRRLIGQFL-------------------FWMQELTAKVFMVA 369
Query: 184 TGNDFSTLYAPLIRDGRMEKFYW-----APTREDRIGVCKGIFRNDNVAD------DDIV 232
T ND STL L+R GR ++ ++ AP RE+ IG+ FR A+ D+V
Sbjct: 370 TANDVSTLPPELLRKGRFDELFFVDLPEAPDREEIIGLY---FRKYLGAEPSQELLTDLV 426
Query: 233 KLVDTFPGQSID-FFGALRARVYDD---------EVRKWISGV 265
L D F G ID + +VY D E++K+ + V
Sbjct: 427 TLTDGFSGSDIDAVIHDIATKVYVDRMPGLPPEPEIKKFFTNV 469
>gi|27754103|ref|NP_080235.2| 26S protease regulatory subunit 10B [Mus musculus]
gi|354497334|ref|XP_003510776.1| PREDICTED: 26S protease regulatory subunit 10B [Cricetulus griseus]
gi|51702772|sp|P62333.1|PRS10_HUMAN RecName: Full=26S protease regulatory subunit 10B; AltName:
Full=26S proteasome AAA-ATPase subunit RPT4; AltName:
Full=Proteasome 26S subunit ATPase 6; AltName:
Full=Proteasome subunit p42
gi|55977306|sp|P62334.1|PRS10_MOUSE RecName: Full=26S protease regulatory subunit 10B; AltName:
Full=26S proteasome AAA-ATPase subunit RPT4; AltName:
Full=Proteasome 26S subunit ATPase 6; AltName:
Full=Proteasome subunit p42
gi|59800155|sp|P62335.1|PRS10_SPETR RecName: Full=26S protease regulatory subunit 10B; AltName:
Full=26S proteasome AAA-ATPase subunit RPT4; AltName:
Full=Conserved ATPase domain protein 44; Short=CADp44;
AltName: Full=Proteasome 26S subunit ATPase 6; AltName:
Full=Proteasome subunit p42
gi|1045497|gb|AAB40354.1| conserved ATPase domain protein 44 [Spermophilus tridecemlineatus]
gi|2213932|gb|AAB61616.1| 26S proteasome regulatory subunit [Homo sapiens]
gi|12848757|dbj|BAB28078.1| unnamed protein product [Mus musculus]
gi|13529266|gb|AAH05390.1| Proteasome (prosome, macropain) 26S subunit, ATPase, 6 [Homo
sapiens]
gi|30582525|gb|AAP35489.1| proteasome (prosome, macropain) 26S subunit, ATPase, 6 [Homo
sapiens]
gi|48145535|emb|CAG32990.1| PSMC6 [Homo sapiens]
gi|61361236|gb|AAX42017.1| proteasome 26S subunit 6 [synthetic construct]
gi|61361244|gb|AAX42018.1| proteasome 26S subunit 6 [synthetic construct]
gi|74185083|dbj|BAE39144.1| unnamed protein product [Mus musculus]
gi|74194908|dbj|BAE26034.1| unnamed protein product [Mus musculus]
gi|109733764|gb|AAI16753.1| Proteasome (prosome, macropain) 26S subunit, ATPase, 6 [Mus
musculus]
gi|111601154|gb|AAI19169.1| Proteasome (prosome, macropain) 26S subunit, ATPase, 6 [Mus
musculus]
gi|119586049|gb|EAW65645.1| proteasome (prosome, macropain) 26S subunit, ATPase, 6 [Homo
sapiens]
gi|123994057|gb|ABM84630.1| proteasome (prosome, macropain) 26S subunit, ATPase, 6 [synthetic
construct]
gi|148688745|gb|EDL20692.1| proteasome (prosome, macropain) 26S subunit, ATPase, 6, isoform
CRA_b [Mus musculus]
gi|189053915|dbj|BAG36422.1| unnamed protein product [Homo sapiens]
gi|208967156|dbj|BAG73592.1| proteasome (prosome, macropain) 26S subunit, ATPase, 6 [synthetic
construct]
gi|296483635|tpg|DAA25750.1| TPA: 26S protease regulatory subunit S10B [Bos taurus]
gi|335775939|gb|AEH58739.1| 26S protease regulatory subunit S10B-like protein [Equus caballus]
Length = 389
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 46/186 (24%), Positives = 88/186 (47%), Gaps = 20/186 (10%)
Query: 64 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 123
++G G GK+ V +++ N + + + + GE A+LIR+ + A D +
Sbjct: 172 LYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIREMFNYARD----HQP 227
Query: 124 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 183
C + ++++DA GR ++ T ++ + TLM + + Q+ G + RV +I+
Sbjct: 228 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGF---DTLHRVKMIM 277
Query: 184 TGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCK----GIFRNDNVADDDIVKLVDT 237
N TL L+R GR+++ P + R+ + K I ++ + + IVKL D
Sbjct: 278 ATNRPDTLDPALLRPGRLDRKIHIDLPNEQARLDILKIHAGPITKHGEIDYEAIVKLSDG 337
Query: 238 FPGQSI 243
F G +
Sbjct: 338 FNGADL 343
>gi|114053003|ref|NP_001039705.1| 26S protease regulatory subunit 10B [Bos taurus]
gi|119390895|sp|Q2KIW6.1|PRS10_BOVIN RecName: Full=26S protease regulatory subunit 10B; AltName:
Full=26S proteasome AAA-ATPase subunit RPT4; AltName:
Full=Proteasome 26S subunit ATPase 6
gi|86827363|gb|AAI12483.1| Proteasome (prosome, macropain) 26S subunit, ATPase, 6 [Bos taurus]
Length = 389
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 46/186 (24%), Positives = 88/186 (47%), Gaps = 20/186 (10%)
Query: 64 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 123
++G G GK+ V +++ N + + + + GE A+LIR+ + A D +
Sbjct: 172 LYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIREMFNYARD----HQP 227
Query: 124 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 183
C + ++++DA GR ++ T ++ + TLM + + Q+ G + RV +I+
Sbjct: 228 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGF---DTLHRVKMIM 277
Query: 184 TGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCK----GIFRNDNVADDDIVKLVDT 237
N TL L+R GR+++ P + R+ + K I ++ + + IVKL D
Sbjct: 278 ATNRPDTLDPALLRPGRLDRKIHIDLPNEQARLDILKIHAGPITKHGEIDYEAIVKLSDG 337
Query: 238 FPGQSI 243
F G +
Sbjct: 338 FNGADL 343
>gi|57529874|ref|NP_001006494.1| 26S protease regulatory subunit S10B [Gallus gallus]
gi|53130584|emb|CAG31621.1| hypothetical protein RCJMB04_8n6 [Gallus gallus]
Length = 389
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 46/186 (24%), Positives = 88/186 (47%), Gaps = 20/186 (10%)
Query: 64 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 123
++G G GK+ V +++ N + + + + GE A+LIR+ + A D +
Sbjct: 172 LYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIREMFNYARD----HQP 227
Query: 124 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 183
C + ++++DA GR ++ T ++ + TLM + + Q+ G + RV +I+
Sbjct: 228 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGF---DTLHRVKMIM 277
Query: 184 TGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCK----GIFRNDNVADDDIVKLVDT 237
N TL L+R GR+++ P + R+ + K I ++ + + IVKL D
Sbjct: 278 ATNRPDTLDPALLRPGRLDRKIHIDLPNEQARLDILKIHAGPITKHGEIDYEAIVKLSDG 337
Query: 238 FPGQSI 243
F G +
Sbjct: 338 FNGADL 343
>gi|353236288|emb|CCA68286.1| related to RIX7-AAA-type ATPase required for biogenesis and nuclear
export of 60S ribosomal subunits [Piriformospora indica
DSM 11827]
Length = 735
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 50/227 (22%), Positives = 103/227 (45%), Gaps = 31/227 (13%)
Query: 64 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 123
+WG G GK+ + V + N I + EL + GE + +RQ + A +
Sbjct: 477 LWGPPGCGKTLLAKAVANESRANFISVKGPELLNKYVGESERALRQVFSRA----RASSP 532
Query: 124 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 183
C + ++LDA R + + + ++VN L +L G+ +++ V +I
Sbjct: 533 CIIFFDELDALVPRRDDSLSES-SARVVNTLL---------TELDGLDSRKG---VHVIA 579
Query: 184 TGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCKGIFRNDNVADDDIVK--LVDTFP 239
N + + R GR++K + PT ++R+ + K + R + +D++V+ ++D
Sbjct: 580 ATNRPDMIDPAMCRPGRLDKLLYVDLPTPDERVEIFKALARRLPIQEDELVQAAILDFVH 639
Query: 240 GQSID-FFGALRARVYDDEVRKWISGVGVGSIGKSLVNSKEAAPTFE 285
G+ + F GA ++ + GV S+ ++ + + E+ P F+
Sbjct: 640 GERFEGFSGA--------DLAALVREAGVTSLRRT-ITAWESVPVFQ 677
Score = 42.7 bits (99), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 41/157 (26%), Positives = 72/157 (45%), Gaps = 15/157 (9%)
Query: 64 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 123
+ G G GK+ + ++ + I +SA + SG +GE K +R+ + EA KK
Sbjct: 137 LHGPPGCGKTLLANAIAGELQVPFISISAPSIVSGMSGESEKTLRETFEEA----KKNAP 192
Query: 124 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 183
C L I+++DA + + Q + ++V A + D+ + ++K ++ V II
Sbjct: 193 CILFIDEIDAITPKR-ESAQREMERRIV-AQFLTCMDDLS-------WDKTDDKAVMIIG 243
Query: 184 TGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCK 218
N +L A L R GR + P E R+ + K
Sbjct: 244 ATNRPDSLDAALRRAGRFDHEIGMNVPDEEGRVQILK 280
>gi|158295544|ref|XP_316268.4| AGAP006205-PA [Anopheles gambiae str. PEST]
gi|157016089|gb|EAA10786.4| AGAP006205-PA [Anopheles gambiae str. PEST]
Length = 1020
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 45/209 (21%), Positives = 89/209 (42%), Gaps = 27/209 (12%)
Query: 51 MSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQR 110
+ L + P + + G G GK+ + V + GIN I + EL + GE + +RQ
Sbjct: 758 LKLLGLTAPSGVLLCGPPGCGKTLLAKAVANEAGINFISVKGPELLNMYVGESERAVRQC 817
Query: 111 YREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGM 170
++ A + C + ++ D+ + T + + ++VN L M
Sbjct: 818 FQRA----RNSAPCVIFFDEFDSLCPKRSDTAEGSAGTRVVNQLLTE------------M 861
Query: 171 YNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCKGIFRN----- 223
EE V ++ N + ++R GR++K + P +EDR+ + + + +N
Sbjct: 862 DGIEERKGVFLMAATNRPDIVDPAVLRPGRLDKILYVGLPAKEDRVDILRALTKNRTQPR 921
Query: 224 --DNVADDDIVKLVDTFPGQSIDFFGALR 250
D+V + + +L + + G D G +R
Sbjct: 922 LADDVELEKVAELTEGYTG--ADLAGLVR 948
>gi|395838570|ref|XP_003792186.1| PREDICTED: 26S protease regulatory subunit 10B [Otolemur garnettii]
Length = 403
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 46/186 (24%), Positives = 88/186 (47%), Gaps = 20/186 (10%)
Query: 64 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 123
++G G GK+ V +++ N + + + + GE A+LIR+ + A D +
Sbjct: 186 LYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIREMFNYARD----HQP 241
Query: 124 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 183
C + ++++DA GR ++ T ++ + TLM + + Q+ G + RV +I+
Sbjct: 242 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGF---DTLHRVKMIM 291
Query: 184 TGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCK----GIFRNDNVADDDIVKLVDT 237
N TL L+R GR+++ P + R+ + K I ++ + + IVKL D
Sbjct: 292 ATNRPDTLDPALLRPGRLDRKIHIDLPNEQARLDILKIHAGPITKHGEIDYEAIVKLSDG 351
Query: 238 FPGQSI 243
F G +
Sbjct: 352 FNGADL 357
>gi|375102754|ref|ZP_09749017.1| AAA+ family ATPase [Saccharomonospora cyanea NA-134]
gi|374663486|gb|EHR63364.1| AAA+ family ATPase [Saccharomonospora cyanea NA-134]
Length = 747
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 56/246 (22%), Positives = 104/246 (42%), Gaps = 26/246 (10%)
Query: 10 MSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLV--VHITKNFMSLPNIKVPLILGIWGG 67
MS+ D ++ G LD+ D + + + ++ + +F L + P + I+G
Sbjct: 473 MSTTDTLATG--GITLDDVGDMAQVKQSLTETVLWPLRYPDSFARL-GVAPPRGVLIYGP 529
Query: 68 KGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLM 127
G GK+F + +N + EL GE + +R+ +R AA+ +
Sbjct: 530 PGNGKTFLVRALAGTGALNVFSVKGAELLDKWVGESERAVRELFRRAAE----AAPSLIF 585
Query: 128 INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGND 187
++++DA A R G ++ ++++V A L + + E R ++V +
Sbjct: 586 LDEVDALAPRRGQSSDSGASDRVVAALLTEL-------------DGVEPMRDVVVVGATN 632
Query: 188 FSTLYAP-LIRDGRMEKFYWAPT--REDRIGVCKGIFRNDNVADD-DIVKLVDTFPGQSI 243
L P L+R GR+E+ + P E R + + RN +A D D+ +L G S
Sbjct: 633 RPELVDPALLRPGRLERLIYVPPPDTEARAAILRAGARNTPLASDVDLDELATQLDGYSA 692
Query: 244 DFFGAL 249
AL
Sbjct: 693 ADCAAL 698
>gi|30583901|gb|AAP36199.1| Homo sapiens proteasome (prosome, macropain) 26S subunit, ATPase, 6
[synthetic construct]
gi|60653563|gb|AAX29475.1| proteasome 26S subunit 6 [synthetic construct]
Length = 390
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 46/186 (24%), Positives = 88/186 (47%), Gaps = 20/186 (10%)
Query: 64 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 123
++G G GK+ V +++ N + + + + GE A+LIR+ + A D +
Sbjct: 172 LYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIREMFNYARD----HQP 227
Query: 124 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 183
C + ++++DA GR ++ T ++ + TLM + + Q+ G + RV +I+
Sbjct: 228 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGF---DTLHRVKMIM 277
Query: 184 TGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCK----GIFRNDNVADDDIVKLVDT 237
N TL L+R GR+++ P + R+ + K I ++ + + IVKL D
Sbjct: 278 ATNRPDTLDPALLRPGRLDRKIHIDLPNEQARLDILKIHAGPITKHGEIDYEAIVKLSDG 337
Query: 238 FPGQSI 243
F G +
Sbjct: 338 FNGADL 343
>gi|355714057|gb|AES04878.1| proteasome 26S ATPase subunit 6 [Mustela putorius furo]
Length = 370
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 46/186 (24%), Positives = 88/186 (47%), Gaps = 20/186 (10%)
Query: 64 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 123
++G G GK+ V +++ N + + + + GE A+LIR+ + A D +
Sbjct: 153 LYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIREMFNYARD----HQP 208
Query: 124 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 183
C + ++++DA GR ++ T ++ + TLM + + Q+ G + RV +I+
Sbjct: 209 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGF---DTLHRVKMIM 258
Query: 184 TGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCK----GIFRNDNVADDDIVKLVDT 237
N TL L+R GR+++ P + R+ + K I ++ + + IVKL D
Sbjct: 259 ATNRPDTLDPALLRPGRLDRKIHIDLPNEQARLDILKIHAGPITKHGEIDYEAIVKLSDG 318
Query: 238 FPGQSI 243
F G +
Sbjct: 319 FNGADL 324
>gi|345795599|ref|XP_003434055.1| PREDICTED: 26S protease regulatory subunit 10B-like [Canis lupus
familiaris]
Length = 418
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 46/186 (24%), Positives = 88/186 (47%), Gaps = 20/186 (10%)
Query: 64 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 123
++G G GK+ V +++ N + + + + GE A+LIR+ + A D +
Sbjct: 201 LYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIREMFNYARD----HQP 256
Query: 124 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 183
C + ++++DA GR ++ T ++ + TLM + + Q+ G + RV +I+
Sbjct: 257 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGF---DTLHRVKMIM 306
Query: 184 TGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCK----GIFRNDNVADDDIVKLVDT 237
N TL L+R GR+++ P + R+ + K I ++ + + IVKL D
Sbjct: 307 ATNRPDTLDPALLRPGRLDRKIHIDLPNEQARLDILKIHAGPITKHGEIDYEAIVKLSDG 366
Query: 238 FPGQSI 243
F G +
Sbjct: 367 FNGADL 372
>gi|15897351|ref|NP_341956.1| AAA ATPase [Sulfolobus solfataricus P2]
gi|13813572|gb|AAK40746.1| AAA family ATPase [Sulfolobus solfataricus P2]
Length = 769
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 50/212 (23%), Positives = 93/212 (43%), Gaps = 28/212 (13%)
Query: 56 IKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 115
I+ P + ++G G GK+ + V + G N I + E+ S GE K +R+ +R A
Sbjct: 507 IRPPKGILLFGPPGTGKTMLAKAVATESGANFIAVRGPEILSKWVGESEKAVREIFRRA- 565
Query: 116 DIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEE 175
++ C + +++D+ A G T V ++VN L ++ G+ +
Sbjct: 566 ---RQTAPCVIFFDEIDSIAPMRGFTHDSGVTERIVNQLLS---------EMDGIQSLN- 612
Query: 176 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRED--RIGVCKGIFR----NDNVADD 229
RV +I N L L+R GR ++ + P ++ RI + K R + +V +
Sbjct: 613 --RVVVIAATNRPDILDPALLRPGRFDRLIYVPPPDEKARIEILKIYTRTLPIDSSVNLE 670
Query: 230 DIVKLVDTFPGQSIDFFG------ALRARVYD 255
++ K ++ + G I+ LR + YD
Sbjct: 671 ELAKKLEGYTGADIEALARETTMKVLRQKYYD 702
>gi|213972598|ref|NP_001093979.1| proteasome (prosome, macropain) 26S subunit, ATPase, 6 [Rattus
norvegicus]
gi|149033503|gb|EDL88301.1| rCG61291 [Rattus norvegicus]
Length = 403
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 46/186 (24%), Positives = 88/186 (47%), Gaps = 20/186 (10%)
Query: 64 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 123
++G G GK+ V +++ N + + + + GE A+LIR+ + A D +
Sbjct: 186 LYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIREMFNYARD----HQP 241
Query: 124 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 183
C + ++++DA GR ++ T ++ + TLM + + Q+ G + RV +I+
Sbjct: 242 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGF---DTLHRVKMIM 291
Query: 184 TGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCK----GIFRNDNVADDDIVKLVDT 237
N TL L+R GR+++ P + R+ + K I ++ + + IVKL D
Sbjct: 292 ATNRPDTLDPALLRPGRLDRKIHIDLPNEQARLDILKIHAGPITKHGEIDYEAIVKLSDG 351
Query: 238 FPGQSI 243
F G +
Sbjct: 352 FNGADL 357
>gi|448738116|ref|ZP_21720147.1| proteasome-activating nucleotidase [Halococcus thailandensis JCM
13552]
gi|445802700|gb|EMA53004.1| proteasome-activating nucleotidase [Halococcus thailandensis JCM
13552]
Length = 405
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 47/195 (24%), Positives = 83/195 (42%), Gaps = 20/195 (10%)
Query: 56 IKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 115
I+ P + + G G GK+ + V + I M+ EL GE A+L+R +
Sbjct: 182 IEPPTGVLLHGPPGTGKTMLAKAVANETDATFIKMAGSELVRKFIGEGARLVRDLF---- 237
Query: 116 DIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEE 175
++ + + + I+++DA A + T T + V T+M + L M E+
Sbjct: 238 ELASEHEPAVIFIDEIDAVASKR--TDSKTSGDAEVQRTMMQL--------LSEMDGFED 287
Query: 176 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPT-----REDRIGV-CKGIFRNDNVADD 229
+ II N F L ++R GR ++ P RE + +G+ D+V D
Sbjct: 288 RGDISIIAATNRFDMLDRAILRPGRFDRLIEVPKPGPDGREKIFAIHTRGMNLADDVEFD 347
Query: 230 DIVKLVDTFPGQSID 244
++ + D F G I+
Sbjct: 348 ELATMADEFSGAEIE 362
>gi|336254270|ref|YP_004597377.1| proteasome-activating nucleotidase [Halopiger xanaduensis SH-6]
gi|335338259|gb|AEH37498.1| Proteasome-activating nucleotidase [Halopiger xanaduensis SH-6]
Length = 405
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 44/168 (26%), Positives = 75/168 (44%), Gaps = 16/168 (9%)
Query: 64 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 123
++G G GK+ + V + I M+ EL GE AKL+R ++ + ++ +
Sbjct: 188 LYGPPGTGKTMLAKAVANQTDATFIKMAGSELVHKFIGEGAKLVRDLFK----VAREHEP 243
Query: 124 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 183
+ I+++DA A + T T + V T+M + L M E+ + II
Sbjct: 244 AVIFIDEIDAIAAKR--TESKTSGDAEVQRTMMQL--------LSEMDGFEDRGDIRIIA 293
Query: 184 TGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCKGIFRNDNVADD 229
N F L ++R GR ++ P +E R + + RN NV+DD
Sbjct: 294 ATNRFDMLDRAILRPGRFDRLIEVPKPNQEGREIIFQIHTRNMNVSDD 341
>gi|326921318|ref|XP_003206908.1| PREDICTED: 26S protease regulatory subunit 10B-like [Meleagris
gallopavo]
Length = 372
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 46/186 (24%), Positives = 88/186 (47%), Gaps = 20/186 (10%)
Query: 64 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 123
++G G GK+ V +++ N + + + + GE A+LIR+ + A D +
Sbjct: 155 LYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIREMFNYARD----HQP 210
Query: 124 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 183
C + ++++DA GR ++ T ++ + TLM + + Q+ G + RV +I+
Sbjct: 211 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGF---DTLHRVKMIM 260
Query: 184 TGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCK----GIFRNDNVADDDIVKLVDT 237
N TL L+R GR+++ P + R+ + K I ++ + + IVKL D
Sbjct: 261 ATNRPDTLDPALLRPGRLDRKIHIDLPNEQARLDILKIHAGPITKHGEIDYEAIVKLSDG 320
Query: 238 FPGQSI 243
F G +
Sbjct: 321 FNGADL 326
>gi|448427600|ref|ZP_21583915.1| proteasome-activating nucleotidase [Halorubrum terrestre JCM 10247]
gi|445678287|gb|ELZ30781.1| proteasome-activating nucleotidase [Halorubrum terrestre JCM 10247]
Length = 405
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 49/182 (26%), Positives = 79/182 (43%), Gaps = 17/182 (9%)
Query: 64 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 123
++G G GK+ + V + I M+ EL GE AKL+R + ++ ++ +
Sbjct: 188 LYGPPGTGKTMLAKAVANETDATFIKMAGSELVHKFIGEGAKLVRDLF----EVARENQP 243
Query: 124 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 183
L I+++DA A + T T + V T+M + L M +E V II
Sbjct: 244 AVLFIDEIDAIASKR--TDSKTSGDAEVQRTMMQL--------LSEMDGFDERGEVRIIA 293
Query: 184 TGNDFSTLYAPLIRDGRMEKFYWAPT--REDRIGVCKGIFRNDNVADD-DIVKLVDTFPG 240
N F L ++R GR ++ P E R + + RN N+AD D +L + P
Sbjct: 294 ATNRFDMLDPAILRPGRFDRLIEVPKPETEGREIIFQIHTRNMNLADGVDFAELAELTPE 353
Query: 241 QS 242
S
Sbjct: 354 AS 355
>gi|389847491|ref|YP_006349730.1| proteasome-activating nucleotidase [Haloferax mediterranei ATCC
33500]
gi|388244797|gb|AFK19743.1| proteasome-activating nucleotidase [Haloferax mediterranei ATCC
33500]
Length = 394
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 59/234 (25%), Positives = 101/234 (43%), Gaps = 26/234 (11%)
Query: 56 IKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 115
I P + ++G G GK+ + V + + I M+ EL GE A+L+R ++ AA
Sbjct: 165 IDPPAGVLLYGPPGTGKTMLAKAVANETNASFIKMAGSELVQKFIGEGARLVRDLFKLAA 224
Query: 116 DIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEE 175
+ + + I+++DA A + T T + V T+M + L M ++
Sbjct: 225 ----EREPVVIFIDEIDAVASKR--TDSKTSGDAEVQRTMMQL--------LSEMDGFDD 270
Query: 176 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCKGIFRNDNVADDDIVK 233
+ II N F L ++R GR ++ P E R + R+ NVADD V
Sbjct: 271 RGEIRIIAATNRFDMLDEAILRPGRFDRLIEVPKPAVEGRRRILDIHTRDMNVADD--VN 328
Query: 234 LVDTFPGQSIDFFGALRARVYDD-------EVRKWISGVGVGSIGKSLVNSKEA 280
L D + D+ GA A + + + R ++GV + + L N +E+
Sbjct: 329 L-DALADELDDYSGADIASLTTEAGMFAIRDGRTEVTGVDFDAAHEKLTNVEES 381
>gi|335280279|ref|XP_001928782.2| PREDICTED: 26S protease regulatory subunit 10B [Sus scrofa]
Length = 403
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 46/186 (24%), Positives = 88/186 (47%), Gaps = 20/186 (10%)
Query: 64 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 123
++G G GK+ V +++ N + + + + GE A+LIR+ + A D +
Sbjct: 186 LYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIREMFNYARD----HQP 241
Query: 124 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 183
C + ++++DA GR ++ T ++ + TLM + + Q+ G + RV +I+
Sbjct: 242 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGF---DTLHRVKMIM 291
Query: 184 TGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCK----GIFRNDNVADDDIVKLVDT 237
N TL L+R GR+++ P + R+ + K I ++ + + IVKL D
Sbjct: 292 ATNRPDTLDPALLRPGRLDRKIHIDLPNEQARLDILKIHAGPITKHGEIDYEAIVKLSDG 351
Query: 238 FPGQSI 243
F G +
Sbjct: 352 FNGADL 357
>gi|412986591|emb|CCO15017.1| unnamed protein product [Bathycoccus prasinos]
Length = 1277
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 41/162 (25%), Positives = 72/162 (44%), Gaps = 19/162 (11%)
Query: 64 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 123
++G G GK+F + G+ I + E+ S GE K IR+ ++ A +
Sbjct: 1011 LYGPPGVGKTFVAHAAITESGMRCIKVRGPEIMSKFIGESEKAIREVFKRA----RAAAP 1066
Query: 124 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 183
CCL ++ D+ R G+ V +++VN L I +L G+Y +I
Sbjct: 1067 CCLFFDEFDSICPRR-GSDNAGVMDRLVNQLLTEID---GFEELRGVY---------VIA 1113
Query: 184 TGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCKGIFRN 223
T + T+ L+R GR++ + PT ++R + + RN
Sbjct: 1114 TSSRPDTMDPALLRPGRLDNLLFLDWPTEKERYDIMWKLTRN 1155
>gi|195539395|ref|NP_002797.3| 26S protease regulatory subunit 10B [Homo sapiens]
gi|73963837|ref|XP_535701.2| PREDICTED: 26S protease regulatory subunit 10B [Canis lupus
familiaris]
gi|114653051|ref|XP_001159476.1| PREDICTED: 26S protease regulatory subunit 10B isoform 2 [Pan
troglodytes]
gi|291403875|ref|XP_002718294.1| PREDICTED: proteasome 26S ATPase subunit 6 [Oryctolagus cuniculus]
gi|296215034|ref|XP_002753956.1| PREDICTED: 26S protease regulatory subunit 10B [Callithrix jacchus]
gi|297695107|ref|XP_002824794.1| PREDICTED: 26S protease regulatory subunit 10B [Pongo abelii]
gi|332237110|ref|XP_003267746.1| PREDICTED: 26S protease regulatory subunit 10B [Nomascus
leucogenys]
gi|344273723|ref|XP_003408668.1| PREDICTED: 26S protease regulatory subunit 10B-like [Loxodonta
africana]
gi|348572189|ref|XP_003471876.1| PREDICTED: 26S protease regulatory subunit 10B-like [Cavia
porcellus]
gi|397523475|ref|XP_003831757.1| PREDICTED: 26S protease regulatory subunit 10B [Pan paniscus]
gi|410962256|ref|XP_003987690.1| PREDICTED: 26S protease regulatory subunit 10B [Felis catus]
gi|426232518|ref|XP_004010269.1| PREDICTED: 26S protease regulatory subunit 10B [Ovis aries]
gi|426376918|ref|XP_004055227.1| PREDICTED: 26S protease regulatory subunit 10B-like [Gorilla
gorilla gorilla]
gi|351707287|gb|EHB10206.1| 26S protease regulatory subunit S10B [Heterocephalus glaber]
gi|380814880|gb|AFE79314.1| 26S protease regulatory subunit 10B [Macaca mulatta]
gi|410216102|gb|JAA05270.1| proteasome (prosome, macropain) 26S subunit, ATPase, 6 [Pan
troglodytes]
gi|410290648|gb|JAA23924.1| proteasome (prosome, macropain) 26S subunit, ATPase, 6 [Pan
troglodytes]
gi|417400316|gb|JAA47112.1| Putative 26s protease regulatory subunit s10b-like protein
[Desmodus rotundus]
gi|431895846|gb|ELK05264.1| 26S protease regulatory subunit S10B [Pteropus alecto]
Length = 403
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 46/186 (24%), Positives = 88/186 (47%), Gaps = 20/186 (10%)
Query: 64 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 123
++G G GK+ V +++ N + + + + GE A+LIR+ + A D +
Sbjct: 186 LYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIREMFNYARD----HQP 241
Query: 124 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 183
C + ++++DA GR ++ T ++ + TLM + + Q+ G + RV +I+
Sbjct: 242 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGF---DTLHRVKMIM 291
Query: 184 TGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCK----GIFRNDNVADDDIVKLVDT 237
N TL L+R GR+++ P + R+ + K I ++ + + IVKL D
Sbjct: 292 ATNRPDTLDPALLRPGRLDRKIHIDLPNEQARLDILKIHAGPITKHGEIDYEAIVKLSDG 351
Query: 238 FPGQSI 243
F G +
Sbjct: 352 FNGADL 357
>gi|334310858|ref|XP_001365047.2| PREDICTED: 26S protease regulatory subunit 10B-like [Monodelphis
domestica]
Length = 403
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 46/186 (24%), Positives = 88/186 (47%), Gaps = 20/186 (10%)
Query: 64 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 123
++G G GK+ V +++ N + + + + GE A+LIR+ + A D +
Sbjct: 186 LYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIREMFNYARD----HQP 241
Query: 124 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 183
C + ++++DA GR ++ T ++ + TLM + + Q+ G + RV +I+
Sbjct: 242 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGF---DTLHRVKMIM 291
Query: 184 TGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCK----GIFRNDNVADDDIVKLVDT 237
N TL L+R GR+++ P + R+ + K I ++ + + IVKL D
Sbjct: 292 ATNRPDTLDPALLRPGRLDRKIHIDLPNEQARLDILKIHAGPITKHGEIDYEAIVKLSDG 351
Query: 238 FPGQSI 243
F G +
Sbjct: 352 FNGADL 357
>gi|336121896|ref|YP_004576671.1| proteasome-activating nucleotidase [Methanothermococcus okinawensis
IH1]
gi|334856417|gb|AEH06893.1| Proteasome-activating nucleotidase [Methanothermococcus okinawensis
IH1]
Length = 408
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 78/179 (43%), Gaps = 16/179 (8%)
Query: 64 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 123
++G G GK+ + V + + I + EL GE AKL++ ++ A K+
Sbjct: 188 LYGPPGTGKTLLAKAVAHETNASFIKIVGSELVKKFIGEGAKLVKDVFKLA----KEKAP 243
Query: 124 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 183
C + I+++DA A R T T ++ V TLM + L M E V II
Sbjct: 244 CIIFIDEIDAVASRR--TESLTGGDREVQRTLMQL--------LAEMDGFESKGDVKIIA 293
Query: 184 TGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCKGIFRNDNVADDDIVKLVDTFPG 240
N L ++R GR ++ AP+ E R+ + K +N N+ D+ K+ G
Sbjct: 294 ATNRPDILDPAILRPGRFDRIIEVPAPSEEGRLEILKIHTKNMNLKHVDLKKIAKMTEG 352
>gi|149622137|ref|XP_001521658.1| PREDICTED: 26S protease regulatory subunit 10B-like, partial
[Ornithorhynchus anatinus]
Length = 400
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 46/186 (24%), Positives = 88/186 (47%), Gaps = 20/186 (10%)
Query: 64 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 123
++G G GK+ V +++ N + + + + GE A+LIR+ + A D +
Sbjct: 183 LYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIREMFNYARD----HQP 238
Query: 124 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 183
C + ++++DA GR ++ T ++ + TLM + + Q+ G + RV +I+
Sbjct: 239 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGF---DTLHRVKMIM 288
Query: 184 TGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCK----GIFRNDNVADDDIVKLVDT 237
N TL L+R GR+++ P + R+ + K I ++ + + IVKL D
Sbjct: 289 ATNRPDTLDPALLRPGRLDRKIHIDLPNEQARLDILKIHAGPITKHGEIDYEAIVKLSDG 348
Query: 238 FPGQSI 243
F G +
Sbjct: 349 FNGADL 354
>gi|324506772|gb|ADY42884.1| 26S protease regulatory subunit 10B [Ascaris suum]
Length = 449
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 53/218 (24%), Positives = 98/218 (44%), Gaps = 29/218 (13%)
Query: 64 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 123
++G G GK+ V +++ N + + + + GE A++IR+ + A D +
Sbjct: 232 LYGPPGTGKTLLARAVASQLDCNFLKVVSSAIVDKYIGESARMIREMFNYARD----HQP 287
Query: 124 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 183
C + ++++DA GR ++ T ++ + TLM + + Q+ G + +V II+
Sbjct: 288 CIVFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGF---DSLGKVKIIM 337
Query: 184 TGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCK----GIFRNDNVADDDIVKLVDT 237
N TL L+R GR+++ P + R+ V K I ++ + + IVKL D
Sbjct: 338 ATNRPDTLDPALLRPGRLDRKIEIPLPNEQSRLEVLKIHASKITKHGEIDYEAIVKLSDG 397
Query: 238 FPGQSID---------FFGALRARVYDDEVRKWISGVG 266
F G + A R V D++ K + VG
Sbjct: 398 FSGADLRNVCTEAGLYAIRAEREYVIDEDFMKAVRKVG 435
>gi|449504593|ref|XP_002200452.2| PREDICTED: 26S protease regulatory subunit 10B [Taeniopygia
guttata]
Length = 391
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 46/186 (24%), Positives = 87/186 (46%), Gaps = 20/186 (10%)
Query: 64 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 123
++G G GK+ V +++ N + + + + GE A+LIR+ + A D +
Sbjct: 174 LYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIREMFNYARD----HQP 229
Query: 124 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 183
C + ++++DA GR ++ T ++ + TLM + + Q+ G RV +I+
Sbjct: 230 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGFDTLH---RVKMIM 279
Query: 184 TGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCK----GIFRNDNVADDDIVKLVDT 237
N TL L+R GR+++ P + R+ + K I ++ + + IVKL D
Sbjct: 280 ATNRPDTLDPALLRPGRLDRKIHIDLPNEQARLDILKIHAGPITKHGEIDYEAIVKLSDG 339
Query: 238 FPGQSI 243
F G +
Sbjct: 340 FNGADL 345
>gi|115402109|ref|XP_001217131.1| ribosome biogenesis ATPase RIX7 [Aspergillus terreus NIH2624]
gi|114188977|gb|EAU30677.1| ribosome biogenesis ATPase RIX7 [Aspergillus terreus NIH2624]
Length = 514
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 60/229 (26%), Positives = 104/229 (45%), Gaps = 29/229 (12%)
Query: 25 LDNTIDGLYIAPAFMDKLVVHITKN--FMSLPNIKVPLILGIWGGKGQGKSFQCELVFAK 82
LD+ I+ L D +++ +T+ +MS N++ P + + G G GK+ A+
Sbjct: 115 LDDVIEDLG------DLVILPMTRPQVYMS-SNVQPPRGVLLHGPPGCGKTMIANAFAAE 167
Query: 83 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTT 142
+G+ I +SA + SG +GE K +R+ + EA K+ C + I+++DA + +
Sbjct: 168 LGVPFISISAPSIVSGMSGESEKALREHFEEA----KRLAPCLIFIDEIDAITPKR-ESA 222
Query: 143 QYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRME 202
Q + ++V L TC+ + + P V ++ N +L A L R GR +
Sbjct: 223 QREMEKRIVAQLL-------TCMDDLALDKTDGKP-VIVLAATNRPDSLDAALRRGGRFD 274
Query: 203 KF--YWAPTREDRIGVCKGIFRNDNVADD-DIVKLVDTFPGQSIDFFGA 248
K P+ R + + + R +ADD D L PG F GA
Sbjct: 275 KEINMTVPSEPVREKILRALTRKMVLADDLDFKTLAKRTPG----FVGA 319
>gi|403278020|ref|XP_003930633.1| PREDICTED: 26S protease regulatory subunit 10B [Saimiri boliviensis
boliviensis]
Length = 428
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 46/186 (24%), Positives = 87/186 (46%), Gaps = 20/186 (10%)
Query: 64 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 123
++G G GK+ V +++ N + + + + GE A+LIR+ + A D +
Sbjct: 186 LYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIREMFNYARD----HQP 241
Query: 124 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 183
C + ++++DA GR ++ T ++ + TLM + + Q+ G RV +I+
Sbjct: 242 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGFDTLH---RVKMIM 291
Query: 184 TGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCK----GIFRNDNVADDDIVKLVDT 237
N TL L+R GR+++ P + R+ + K I ++ + + IVKL D
Sbjct: 292 ATNRPDTLDPALLRPGRLDRKIHIDLPNEQARLDILKIHAGPITKHGEIDYEAIVKLSDG 351
Query: 238 FPGQSI 243
F G +
Sbjct: 352 FNGADL 357
>gi|284173309|ref|ZP_06387278.1| AAA ATPase family protein [Sulfolobus solfataricus 98/2]
gi|384433872|ref|YP_005643230.1| AAA ATPase [Sulfolobus solfataricus 98/2]
gi|261602026|gb|ACX91629.1| AAA family ATPase, CDC48 subfamily [Sulfolobus solfataricus 98/2]
Length = 759
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 50/212 (23%), Positives = 90/212 (42%), Gaps = 28/212 (13%)
Query: 56 IKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 115
I+ P + ++G G GK+ + V + G N I + E+ S GE K +R+ +R A
Sbjct: 497 IRPPKGILLFGPPGTGKTMLAKAVATESGANFIAVRGPEILSKWVGESEKAVREIFRRA- 555
Query: 116 DIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEE 175
++ C + +++D+ A G T V ++VN L M +
Sbjct: 556 ---RQTAPCVIFFDEIDSIAPMRGFTHDSGVTERIVNQLLSE------------MDGIQS 600
Query: 176 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRED--RIGVCKGIFR----NDNVADD 229
RV +I N L L+R GR ++ + P ++ RI + K R + +V +
Sbjct: 601 LNRVVVIAATNRPDILDPALLRPGRFDRLIYVPPPDEKARIEILKIYTRTLPIDSSVNLE 660
Query: 230 DIVKLVDTFPGQSIDFFG------ALRARVYD 255
++ K ++ + G I+ LR + YD
Sbjct: 661 ELAKKLEGYTGADIEALARETTMKVLRQKYYD 692
>gi|288930616|ref|YP_003434676.1| ATPase AAA, CDC48 subfamily [Ferroglobus placidus DSM 10642]
gi|288892864|gb|ADC64401.1| AAA family ATPase, CDC48 subfamily [Ferroglobus placidus DSM 10642]
Length = 791
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 46/195 (23%), Positives = 88/195 (45%), Gaps = 22/195 (11%)
Query: 56 IKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 115
IK P + ++G G GK+ + V + N I + EL S GE K +R+ +R+A
Sbjct: 544 IKPPKGILLYGPPGTGKTLLAKAVANESNANFISVKGPELLSKWVGESEKHVREMFRKAR 603
Query: 116 DIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEE 175
+ C L +++D+ A R G V ++V+ L +L G+ EE
Sbjct: 604 QVAP----CVLFFDEIDSLAPRRGTGGDTHVTERVVSQLL---------TELDGL---EE 647
Query: 176 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGV------CKGIFRNDNVADD 229
V +I N + L+R GR+E+ + P +++ + +G+ +++V +
Sbjct: 648 LKDVVVIAATNRPDMIDPALLRPGRLERHIYIPPPDEKARLEIFKIHTRGMPLDEDVNLE 707
Query: 230 DIVKLVDTFPGQSID 244
++ K + + G I+
Sbjct: 708 ELAKKTEGYSGADIE 722
>gi|402876178|ref|XP_003901853.1| PREDICTED: 26S protease regulatory subunit 10B [Papio anubis]
Length = 378
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 46/186 (24%), Positives = 88/186 (47%), Gaps = 20/186 (10%)
Query: 64 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 123
++G G GK+ V +++ N + + + + GE A+LIR+ + A D +
Sbjct: 161 LYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIREMFNYARD----HQP 216
Query: 124 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 183
C + ++++DA GR ++ T ++ + TLM + + Q+ G + RV +I+
Sbjct: 217 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGF---DTLHRVKMIM 266
Query: 184 TGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCK----GIFRNDNVADDDIVKLVDT 237
N TL L+R GR+++ P + R+ + K I ++ + + IVKL D
Sbjct: 267 ATNRPDTLDPALLRPGRLDRKIHIDLPNEQARLDILKIHAGPITKHGEIDYEAIVKLSDG 326
Query: 238 FPGQSI 243
F G +
Sbjct: 327 FNGADL 332
>gi|322368342|ref|ZP_08042911.1| proteasome-activating nucleotidase [Haladaptatus paucihalophilus
DX253]
gi|320552358|gb|EFW94003.1| proteasome-activating nucleotidase [Haladaptatus paucihalophilus
DX253]
Length = 407
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 55/196 (28%), Positives = 85/196 (43%), Gaps = 21/196 (10%)
Query: 56 IKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 115
I+ P + + G G GK+ + V + I M+ EL GE AKL+R + AA
Sbjct: 182 IEPPSGVLLHGPPGTGKTMLAKAVANRTDATFIKMAGSELVQKFIGEGAKLVRDLFSLAA 241
Query: 116 DIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEE 175
+ + + I+++DA A R T T + V T+M + L M E+
Sbjct: 242 ----EREPAVIFIDEIDAVASRR--TDSKTSGDAEVQRTMMQL--------LSEMDGFED 287
Query: 176 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCKGIFRNDNVADD-DIV 232
+ II N F L + ++R GR ++ PT E R + + + N+ADD D
Sbjct: 288 RGNIRIIAATNRFDMLDSAILRPGRFDRLIEVPNPTVEGRHRILEIHTGDMNLADDVDFD 347
Query: 233 KLVDTFPGQSIDFFGA 248
+L D G F GA
Sbjct: 348 RLADETEG----FSGA 359
>gi|302503873|ref|XP_003013896.1| hypothetical protein ARB_08008 [Arthroderma benhamiae CBS 112371]
gi|291177462|gb|EFE33256.1| hypothetical protein ARB_08008 [Arthroderma benhamiae CBS 112371]
Length = 743
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 48/191 (25%), Positives = 87/191 (45%), Gaps = 16/191 (8%)
Query: 42 LVVHITK-NFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNA 100
+V+ +T+ S N++ P + + G G GK+ A++G+ I +SA + SG +
Sbjct: 193 IVLPMTRPQIFSASNVQPPRGVLLHGPPGCGKTMIANAFAAELGVPFIAISAPSIISGMS 252
Query: 101 GEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIAD 160
GE K +R + EA KK C + ++++DA + + Q + ++V L
Sbjct: 253 GESEKALRDHFEEA----KKVAPCLIFMDEIDAITPKR-ESAQREMEKRIVAQLL----- 302
Query: 161 NPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKF--YWAPTREDRIGVCK 218
TC+ + + P V ++ N +L L R GR +K P+ R + +
Sbjct: 303 --TCMDDLALAKTDGKP-VIVLAATNRPDSLDPALRRGGRFDKEINLTVPSEPVREQILR 359
Query: 219 GIFRNDNVADD 229
+ R N+ADD
Sbjct: 360 ALTREMNLADD 370
Score = 44.3 bits (103), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 47/200 (23%), Positives = 84/200 (42%), Gaps = 19/200 (9%)
Query: 56 IKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 115
I P + +WG G GK+ + V + N I + EL + GE + +RQ + A
Sbjct: 513 ISAPTGVLLWGPPGCGKTLLAKAVANESRANFISIKGPELLNKYVGESERAVRQVFSRAR 572
Query: 116 DIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEE 175
+ C + ++LDA R T + ++VN L +L G+ +
Sbjct: 573 SSVP----CVIFFDELDALVPRRDDTMS-EASARVVNTLL---------TELDGLGSSRN 618
Query: 176 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCKGIFRNDNVA-DDDIV 232
+ +I N + ++R GR+E + P R++R V + + R + D++V
Sbjct: 619 G--IYVIAATNRPDIIDPAMLRPGRLETLLFVNLPGRDERADVLRTLIRKLPIEMTDELV 676
Query: 233 KLVDTFPGQSIDFFGALRAR 252
+L + G S G+L R
Sbjct: 677 ELARSCEGFSGADLGSLLRR 696
>gi|12852148|dbj|BAB29293.1| unnamed protein product [Mus musculus]
Length = 389
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 44/186 (23%), Positives = 89/186 (47%), Gaps = 20/186 (10%)
Query: 64 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 123
++G G GK+ V +++ N + + + + GE A+LIR+ + + ++ +
Sbjct: 172 LYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIREMF----NYVRDHQP 227
Query: 124 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 183
C + ++++DA GR ++ T ++ + TLM + + Q+ G + RV +I+
Sbjct: 228 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGF---DTLHRVKMIM 277
Query: 184 TGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCK----GIFRNDNVADDDIVKLVDT 237
N TL L+R GR+++ P + R+ + K I ++ + + IVKL D
Sbjct: 278 ATNSPDTLDPALLRPGRLDRKIHIDLPNEQARLDILKIHAGPITKHGEIDYEAIVKLSDG 337
Query: 238 FPGQSI 243
F G +
Sbjct: 338 FNGADL 343
>gi|448497864|ref|ZP_21610607.1| proteasome-activating nucleotidase [Halorubrum coriense DSM 10284]
gi|445699417|gb|ELZ51446.1| proteasome-activating nucleotidase [Halorubrum coriense DSM 10284]
Length = 405
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 49/182 (26%), Positives = 79/182 (43%), Gaps = 17/182 (9%)
Query: 64 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 123
++G G GK+ + V + I M+ EL GE AKL+R + ++ ++ +
Sbjct: 188 LYGPPGTGKTMLAKAVANETDATFIKMAGSELVHKFIGEGAKLVRDLF----EVARENQP 243
Query: 124 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 183
L I+++DA A + T T + V T+M + L M +E V II
Sbjct: 244 AVLFIDEIDAIASKR--TDSKTSGDAEVQRTMMQL--------LSEMDGFDERGEVRIIA 293
Query: 184 TGNDFSTLYAPLIRDGRMEKFYWAPT--REDRIGVCKGIFRNDNVADD-DIVKLVDTFPG 240
N F L ++R GR ++ P E R + + RN N+AD D +L + P
Sbjct: 294 ATNRFDMLDPAILRPGRFDRLIEVPKPETEGREIIFQIHTRNMNLADGVDFAELAELTPE 353
Query: 241 QS 242
S
Sbjct: 354 AS 355
>gi|448633745|ref|ZP_21674244.1| cell division control protein 48 [Haloarcula vallismortis ATCC
29715]
gi|445750436|gb|EMA01874.1| cell division control protein 48 [Haloarcula vallismortis ATCC
29715]
Length = 757
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 56/230 (24%), Positives = 102/230 (44%), Gaps = 26/230 (11%)
Query: 64 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 123
++G G GK+ + V + N I + EL + GE K +R+ + +A ++
Sbjct: 505 MYGPPGTGKTLLAKAVANEAQSNFISVKGPELLNKFVGESEKGVREVFSKA----RENAP 560
Query: 124 CCLMINDLDAGAG-RMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPII 182
+ +++D+ AG R GGTT V ++V+ L +L G+ EE V ++
Sbjct: 561 TVVFFDEIDSIAGERGGGTTDSGVGERVVSQLL---------TELDGI---EEMENVVVV 608
Query: 183 VTGNDFSTLYAPLIRDGRMEKFYWAPTRED--RIGVCKGIFRNDNVAD----DDIVKLVD 236
T N + L+R GR+++ P ++ R + + RN +AD D++ + D
Sbjct: 609 ATTNRPDLIDDALLRPGRLDRHVHVPVPDEDARRAIFQVHTRNKPLADGVDLDELARRTD 668
Query: 237 TFPGQSIDFFGALRARVYDDEVRKWISGVGVGSIGKSLVNSKEAAPTFEQ 286
+ G I+ A+ R++I+ V IG S+ N + FE
Sbjct: 669 GYVGADIE---AVAREASMAATREFINSVDPEEIGDSVSNVRVTMDHFEH 715
>gi|330802418|ref|XP_003289214.1| hypothetical protein DICPUDRAFT_16006 [Dictyostelium purpureum]
gi|325080701|gb|EGC34245.1| hypothetical protein DICPUDRAFT_16006 [Dictyostelium purpureum]
Length = 732
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/161 (22%), Positives = 70/161 (43%), Gaps = 14/161 (8%)
Query: 62 LGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKG 121
L +WG G GKS + + M IN I + ++ S GE ++IR+ ++ A +
Sbjct: 519 LLLWGPSGCGKSLMVKAIATSMSINFISIKGSDIYSKWLGESERIIRELFKSA----RLS 574
Query: 122 KMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPI 181
C + +++D+ A G + + + L + + +Q+ ++ +
Sbjct: 575 SPCIMFFDEIDSLALSRGDSNDSSEDGGTGKRILSQLLNEMDGIQVKS--------QIFL 626
Query: 182 IVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCKGI 220
I N ++ + L+R GR+E PT EDRI + I
Sbjct: 627 IGCTNTIDSIDSALLRPGRLETLIKVDLPTLEDRIDILNVI 667
>gi|302659175|ref|XP_003021281.1| hypothetical protein TRV_04594 [Trichophyton verrucosum HKI 0517]
gi|291185172|gb|EFE40663.1| hypothetical protein TRV_04594 [Trichophyton verrucosum HKI 0517]
Length = 747
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 48/191 (25%), Positives = 87/191 (45%), Gaps = 16/191 (8%)
Query: 42 LVVHITK-NFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNA 100
+V+ +T+ S N++ P + + G G GK+ A++G+ I +SA + SG +
Sbjct: 197 IVLPMTRPQIFSASNVQPPRGVLLHGPPGCGKTMIANAFAAELGVPFIAISAPSIISGMS 256
Query: 101 GEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIAD 160
GE K +R + EA KK C + ++++DA + + Q + ++V L
Sbjct: 257 GESEKALRDHFEEA----KKVAPCLIFMDEIDAITPKR-ESAQREMEKRIVAQLL----- 306
Query: 161 NPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKF--YWAPTREDRIGVCK 218
TC+ + + P V ++ N +L L R GR +K P+ R + +
Sbjct: 307 --TCMDDLALAKTDGKP-VIVLAATNRPDSLDPALRRGGRFDKEINLTVPSEPVREQILR 363
Query: 219 GIFRNDNVADD 229
+ R N+ADD
Sbjct: 364 ALTREMNLADD 374
Score = 43.9 bits (102), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 47/200 (23%), Positives = 84/200 (42%), Gaps = 19/200 (9%)
Query: 56 IKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 115
I P + +WG G GK+ + V + N I + EL + GE + +RQ + A
Sbjct: 517 ISAPTGVLLWGPPGCGKTLLAKAVANESRANFISIKGPELLNKYVGESERAVRQVFSRAR 576
Query: 116 DIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEE 175
+ C + ++LDA R T + ++VN L +L G+ +
Sbjct: 577 SSVP----CVIFFDELDALVPRRDDTMS-EASARVVNTLL---------TELDGLGSSRN 622
Query: 176 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCKGIFRNDNVA-DDDIV 232
+ +I N + ++R GR+E + P R++R V + + R + D++V
Sbjct: 623 G--IYVIAATNRPDIIDPAMLRPGRLETLLFVNLPGRDERAEVLRTLIRKLPIEMTDELV 680
Query: 233 KLVDTFPGQSIDFFGALRAR 252
+L + G S G+L R
Sbjct: 681 ELARSCEGFSGADLGSLLRR 700
>gi|350629383|gb|EHA17756.1| hypothetical protein ASPNIDRAFT_55895 [Aspergillus niger ATCC 1015]
Length = 736
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 52/197 (26%), Positives = 88/197 (44%), Gaps = 20/197 (10%)
Query: 55 NIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREA 114
N++ P + + G G GK+ A++G+ I +SA + SG +GE K +R+ + EA
Sbjct: 199 NVQPPRGVLLHGPPGCGKTMIANAFAAELGVPFISISAPSVISGMSGESEKALREYFEEA 258
Query: 115 ADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKE 174
K+ C + I+++DA + + Q + ++V L TC+ + +
Sbjct: 259 ----KRIAPCLIFIDEIDAITPKR-ESAQREMEKRIVAQLL-------TCMDDLALEKTD 306
Query: 175 ENPRVPIIVTGNDFSTLYAPLIRDGRMEKF--YWAPTREDRIGVCKGIFRNDNVADD-DI 231
P V ++ N +L A L R GR +K P+ R + + + R +ADD D
Sbjct: 307 GKP-VIVLAATNRPDSLDAALRRGGRFDKEINMTVPSEPVREQILRALTRKMRLADDLDF 365
Query: 232 VKLVDTFPGQSIDFFGA 248
L PG F GA
Sbjct: 366 KTLAKRTPG----FVGA 378
Score = 42.7 bits (99), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 46/200 (23%), Positives = 85/200 (42%), Gaps = 19/200 (9%)
Query: 56 IKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 115
I P + +WG G GK+ + V + N I + EL + GE + +RQ + A
Sbjct: 507 ITAPTGVLLWGPPGCGKTLLAKAVANESRANFISVKGPELLNKFVGESERAVRQVFVRAR 566
Query: 116 DIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEE 175
+ C + ++LDA R T + ++VN L + + Q G+Y
Sbjct: 567 SSVP----CVIFFDELDALVPRRDDTLS-EASARVVNTLLTELDGLGSSRQ--GLY---- 615
Query: 176 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCKGIFRNDNVA-DDDIV 232
+I N + ++R GR+E + P+ +R+ + + + RN + ++D+
Sbjct: 616 -----VIAATNRPDIIDPAMLRPGRLETLLFVNLPSPLERVEILQTLVRNLPIEFNEDLR 670
Query: 233 KLVDTFPGQSIDFFGALRAR 252
+L + G S G+L R
Sbjct: 671 RLAEECEGFSGADLGSLLRR 690
>gi|259488300|tpe|CBF87639.1| TPA: AAA family ATPase/60S ribosome export protein Rix7, putative
(AFU_orthologue; AFUA_1G09210) [Aspergillus nidulans
FGSC A4]
Length = 729
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 51/197 (25%), Positives = 87/197 (44%), Gaps = 20/197 (10%)
Query: 55 NIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREA 114
N++ P + + G G GK+ A++G+ I +SA + SG +GE K +R+ + EA
Sbjct: 195 NVQPPRGVLLHGPPGCGKTMIANAFAAELGVPFISISAPSIVSGMSGESEKALREHFEEA 254
Query: 115 ADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKE 174
K+ C + I+++DA + +Q + ++V L TC+ + +
Sbjct: 255 ----KRLAPCLIFIDEIDAITPKREN-SQREMEKRIVAQLL-------TCMDDLALEKTD 302
Query: 175 ENPRVPIIVTGNDFSTLYAPLIRDGRMEKF--YWAPTREDRIGVCKGIFRNDNVADD-DI 231
P V ++ N +L A L R GR +K P+ R + + + R + DD D
Sbjct: 303 GKP-VIVLAATNRPDSLDAALRRGGRFDKEINMTVPSEPVREQILRALTRKMRLVDDLDF 361
Query: 232 VKLVDTFPGQSIDFFGA 248
L PG F GA
Sbjct: 362 KTLAKRTPG----FVGA 374
Score = 39.7 bits (91), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 47/204 (23%), Positives = 85/204 (41%), Gaps = 20/204 (9%)
Query: 56 IKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 115
I P + +WG G GK+ + V + N I + EL + GE + +RQ + A
Sbjct: 500 ITAPTGVLLWGPPGCGKTLLAKAVANESRANFISVKGPELLNKYVGESERAVRQVFVRAR 559
Query: 116 DIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEE 175
I C + ++LDA R T + ++VN L + + Q G+Y
Sbjct: 560 SSIP----CVIFFDELDALVPRRDDTLS-EASARVVNTLLTELDGLGSSRQ--GIY---- 608
Query: 176 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCKGIFRNDNVA-DDDIV 232
+I N + ++R GR+E + P+ +R+ + + + R + ++D+
Sbjct: 609 -----VIAATNRPDIIDPAMLRPGRLETLLFVNLPSPLERVEILQTLVRRLPIEFNEDLR 663
Query: 233 KLVDTFPGQS-IDFFGALRARVYD 255
+L + G S D LR Y+
Sbjct: 664 RLAEECEGFSGADLTSLLRRAGYN 687
>gi|145239089|ref|XP_001392191.1| hypothetical protein ANI_1_94074 [Aspergillus niger CBS 513.88]
gi|134076694|emb|CAK45225.1| unnamed protein product [Aspergillus niger]
Length = 736
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 52/197 (26%), Positives = 88/197 (44%), Gaps = 20/197 (10%)
Query: 55 NIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREA 114
N++ P + + G G GK+ A++G+ I +SA + SG +GE K +R+ + EA
Sbjct: 199 NVQPPRGVLLHGPPGCGKTMIANAFAAELGVPFISISAPSVISGMSGESEKALREYFEEA 258
Query: 115 ADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKE 174
K+ C + I+++DA + + Q + ++V L TC+ + +
Sbjct: 259 ----KRIAPCLIFIDEIDAITPKR-ESAQREMEKRIVAQLL-------TCMDDLALEKTD 306
Query: 175 ENPRVPIIVTGNDFSTLYAPLIRDGRMEKF--YWAPTREDRIGVCKGIFRNDNVADD-DI 231
P V ++ N +L A L R GR +K P+ R + + + R +ADD D
Sbjct: 307 GKP-VIVLAATNRPDSLDAALRRGGRFDKEINMTVPSEPVREQILRALTRKMRLADDLDF 365
Query: 232 VKLVDTFPGQSIDFFGA 248
L PG F GA
Sbjct: 366 KTLAKRTPG----FVGA 378
Score = 42.7 bits (99), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 46/200 (23%), Positives = 85/200 (42%), Gaps = 19/200 (9%)
Query: 56 IKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 115
I P + +WG G GK+ + V + N I + EL + GE + +RQ + A
Sbjct: 507 ITAPTGVLLWGPPGCGKTLLAKAVANESRANFISVKGPELLNKFVGESERAVRQVFVRAR 566
Query: 116 DIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEE 175
+ C + ++LDA R T + ++VN L + + Q G+Y
Sbjct: 567 SSVP----CVIFFDELDALVPRRDDTLS-EASARVVNTLLTELDGLGSSRQ--GLY---- 615
Query: 176 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCKGIFRNDNVA-DDDIV 232
+I N + ++R GR+E + P+ +R+ + + + RN + ++D+
Sbjct: 616 -----VIAATNRPDIIDPAMLRPGRLETLLFVNLPSPLERVEILQTLVRNLPIEFNEDLR 670
Query: 233 KLVDTFPGQSIDFFGALRAR 252
+L + G S G+L R
Sbjct: 671 RLAEECEGFSGADLGSLLRR 690
>gi|298674960|ref|YP_003726710.1| AAA ATPase [Methanohalobium evestigatum Z-7303]
gi|298287948|gb|ADI73914.1| AAA family ATPase, CDC48 subfamily [Methanohalobium evestigatum
Z-7303]
Length = 733
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 46/182 (25%), Positives = 80/182 (43%), Gaps = 19/182 (10%)
Query: 64 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 123
++G G GK+ + V + N I + EL S GE + IR+ +R+A K+
Sbjct: 489 LYGPPGTGKTMLAKAVSGESEANFISIKGPELLSKYVGESERAIRETFRKA----KQAAP 544
Query: 124 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 183
+ I+++D+ A R G + V ++V+ L ++ G+ EE V +I
Sbjct: 545 TVIFIDEIDSIAPRRGKSNDSNVTERVVSQIL---------TEMDGI---EELKDVVVIA 592
Query: 184 TGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCKGIFRNDNVADD-DIVKLVDTFPG 240
N + L+R GR ++ + P +E R + +AD+ DI KL + G
Sbjct: 593 ATNRLDIVDPALLRPGRFDRMVYVSIPEKESRKMIFNIHLEGKPLADNVDIEKLANITEG 652
Query: 241 QS 242
S
Sbjct: 653 YS 654
>gi|67521818|ref|XP_658970.1| hypothetical protein AN1366.2 [Aspergillus nidulans FGSC A4]
gi|40746393|gb|EAA65549.1| hypothetical protein AN1366.2 [Aspergillus nidulans FGSC A4]
Length = 628
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 51/197 (25%), Positives = 87/197 (44%), Gaps = 20/197 (10%)
Query: 55 NIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREA 114
N++ P + + G G GK+ A++G+ I +SA + SG +GE K +R+ + EA
Sbjct: 94 NVQPPRGVLLHGPPGCGKTMIANAFAAELGVPFISISAPSIVSGMSGESEKALREHFEEA 153
Query: 115 ADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKE 174
K+ C + I+++DA + +Q + ++V L TC+ + +
Sbjct: 154 ----KRLAPCLIFIDEIDAITPKREN-SQREMEKRIVAQLL-------TCMDDLALEKTD 201
Query: 175 ENPRVPIIVTGNDFSTLYAPLIRDGRMEKF--YWAPTREDRIGVCKGIFRNDNVADD-DI 231
P V ++ N +L A L R GR +K P+ R + + + R + DD D
Sbjct: 202 GKP-VIVLAATNRPDSLDAALRRGGRFDKEINMTVPSEPVREQILRALTRKMRLVDDLDF 260
Query: 232 VKLVDTFPGQSIDFFGA 248
L PG F GA
Sbjct: 261 KTLAKRTPG----FVGA 273
Score = 40.0 bits (92), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 47/204 (23%), Positives = 85/204 (41%), Gaps = 20/204 (9%)
Query: 56 IKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 115
I P + +WG G GK+ + V + N I + EL + GE + +RQ + A
Sbjct: 399 ITAPTGVLLWGPPGCGKTLLAKAVANESRANFISVKGPELLNKYVGESERAVRQVFVRAR 458
Query: 116 DIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEE 175
I C + ++LDA R T + ++VN L + + Q G+Y
Sbjct: 459 SSIP----CVIFFDELDALVPRRDDTLS-EASARVVNTLLTELDGLGSSRQ--GIY---- 507
Query: 176 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCKGIFRNDNVA-DDDIV 232
+I N + ++R GR+E + P+ +R+ + + + R + ++D+
Sbjct: 508 -----VIAATNRPDIIDPAMLRPGRLETLLFVNLPSPLERVEILQTLVRRLPIEFNEDLR 562
Query: 233 KLVDTFPGQS-IDFFGALRARVYD 255
+L + G S D LR Y+
Sbjct: 563 RLAEECEGFSGADLTSLLRRAGYN 586
>gi|321263320|ref|XP_003196378.1| 6S protease subunit rpt4 [Cryptococcus gattii WM276]
gi|317462854|gb|ADV24591.1| 6S protease subunit rpt4, putative [Cryptococcus gattii WM276]
Length = 405
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 46/186 (24%), Positives = 88/186 (47%), Gaps = 20/186 (10%)
Query: 64 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 123
++G G GK+ V A + N + + + + GE A+LIR+ + A ++ +
Sbjct: 188 LYGPPGTGKTLLARAVAATLNTNFLKVVSSAIVDKYIGESARLIREMFAYA----REHEP 243
Query: 124 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 183
C + ++++DA GR +Q T ++ + TLM + + Q+ G + R II+
Sbjct: 244 CVIFMDEIDAIGGRR--FSQGTSADREIQRTLMELLN-----QMDGF---DSLGRTKIIM 293
Query: 184 TGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGV----CKGIFRNDNVADDDIVKLVDT 237
N TL L+R GR+++ P + R+ + K + ++ ++ + IVKL D
Sbjct: 294 ATNRPDTLDPALLRPGRLDRKIEIPLPNEQGRLEILKIHAKKVNKSGDIDYEAIVKLSDG 353
Query: 238 FPGQSI 243
F G +
Sbjct: 354 FNGADL 359
>gi|91094943|ref|XP_967788.1| PREDICTED: similar to 26S protease regulatory subunit S10b
[Tribolium castaneum]
gi|270016772|gb|EFA13218.1| hypothetical protein TcasGA2_TC010321 [Tribolium castaneum]
Length = 392
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 46/186 (24%), Positives = 89/186 (47%), Gaps = 20/186 (10%)
Query: 64 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 123
++G G GK+ V +++ N + + + + GE A+LIR+ + A D +
Sbjct: 175 LYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIREMFNYAKD----HQP 230
Query: 124 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 183
C + ++++DA GR ++ T ++ + TLM + + Q+ G + +V +I+
Sbjct: 231 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGF---DSLGQVKMIM 280
Query: 184 TGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCK----GIFRNDNVADDDIVKLVDT 237
N TL L+R GR+++ P + R+ + K I ++ + + IVKL DT
Sbjct: 281 ATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLEILKIHAGPIAKHGEIDYEAIVKLSDT 340
Query: 238 FPGQSI 243
F G +
Sbjct: 341 FNGADL 346
>gi|397774902|ref|YP_006542448.1| 26S proteasome subunit P45 family [Natrinema sp. J7-2]
gi|397683995|gb|AFO58372.1| 26S proteasome subunit P45 family [Natrinema sp. J7-2]
Length = 421
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 45/168 (26%), Positives = 73/168 (43%), Gaps = 16/168 (9%)
Query: 64 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 123
++G G GK+ + V + I M+ EL GE AKL+R + D+ ++ +
Sbjct: 204 LYGPPGTGKTMLAKAVANQTDATFIKMAGSELVHKFIGEGAKLVRDLF----DVAREHEP 259
Query: 124 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 183
+ I+++DA A + T T + V T+M + L M EE + II
Sbjct: 260 AVIFIDEIDAIAAKR--TESKTSGDAEVQRTMMQL--------LSEMDGFEERGEIRIIA 309
Query: 184 TGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCKGIFRNDNVADD 229
N F L ++R GR ++ P E R + + R NV+DD
Sbjct: 310 ATNRFDMLDRAILRPGRFDRLIEVPKPNAEGREIIFEIHTRGMNVSDD 357
>gi|242064412|ref|XP_002453495.1| hypothetical protein SORBIDRAFT_04g006830 [Sorghum bicolor]
gi|241933326|gb|EES06471.1| hypothetical protein SORBIDRAFT_04g006830 [Sorghum bicolor]
Length = 400
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 48/194 (24%), Positives = 92/194 (47%), Gaps = 20/194 (10%)
Query: 56 IKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 115
IK P + ++G G GK+ + + + N + + + + GE A+LIR+ + A
Sbjct: 171 IKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKIVSSAIIDKYIGESARLIREMFGYAR 230
Query: 116 DIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEE 175
D + C + ++++DA GR ++ T ++ + TLM + + QL G +E
Sbjct: 231 D----HQPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QLDGF---DE 276
Query: 176 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCK----GIFRNDNVADD 229
+V +I+ N L L+R GR+++ P + R+ V K GI ++ + +
Sbjct: 277 LGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEVLKIHAAGIAKHGEIDYE 336
Query: 230 DIVKLVDTFPGQSI 243
+VKL + F G +
Sbjct: 337 AVVKLAEGFNGADL 350
>gi|17298147|dbj|BAB78495.1| 26S proteasome regulatory particle triple-A ATPase subunit4b [Oryza
sativa Japonica Group]
Length = 377
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 47/194 (24%), Positives = 93/194 (47%), Gaps = 20/194 (10%)
Query: 56 IKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 115
IK P + ++G G GK+ + + + N + + + + GE A+LIR+ + A
Sbjct: 148 IKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKIVSSAIIDKYIGESARLIREMFSYA- 206
Query: 116 DIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEE 175
++ + C + ++++DA GR ++ T ++ + TLM + + QL G +E
Sbjct: 207 ---REHQPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QLDGF---DE 253
Query: 176 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCK----GIFRNDNVADD 229
+V +I+ N L L+R GR+++ P + R+ V K GI ++ + +
Sbjct: 254 LGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEVLKIHAAGIAKHGEIDYE 313
Query: 230 DIVKLVDTFPGQSI 243
+VKL + F G +
Sbjct: 314 AVVKLAEGFNGADL 327
>gi|326470013|gb|EGD94022.1| ribosome biogenesis ATPase RIX7 [Trichophyton tonsurans CBS 112818]
Length = 743
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 48/191 (25%), Positives = 87/191 (45%), Gaps = 16/191 (8%)
Query: 42 LVVHITK-NFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNA 100
+V+ +T+ S N++ P + + G G GK+ A++G+ I +SA + SG +
Sbjct: 193 IVLPMTRPQIFSASNVQPPRGVLLHGPPGCGKTMIANAFAAELGVPFIAISAPSIISGMS 252
Query: 101 GEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIAD 160
GE K +R + EA KK C + ++++DA + + Q + ++V L
Sbjct: 253 GESEKALRDHFEEA----KKVAPCLIFMDEIDAITPKR-ESAQREMEKRIVAQLL----- 302
Query: 161 NPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKF--YWAPTREDRIGVCK 218
TC+ + + P V ++ N +L L R GR +K P+ R + +
Sbjct: 303 --TCMDDLALAKTDGKP-VIVLAATNRPDSLDPALRRGGRFDKEINLTVPSEPVREQILR 359
Query: 219 GIFRNDNVADD 229
+ R N+ADD
Sbjct: 360 ALTREMNLADD 370
Score = 43.9 bits (102), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 47/200 (23%), Positives = 84/200 (42%), Gaps = 19/200 (9%)
Query: 56 IKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 115
I P + +WG G GK+ + V + N I + EL + GE + +RQ + A
Sbjct: 513 ISAPTGVLLWGPPGCGKTLLAKAVANESRANFISIKGPELLNKYVGESERAVRQVFSRAR 572
Query: 116 DIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEE 175
+ C + ++LDA R T + ++VN L +L G+ +
Sbjct: 573 SSVP----CVIFFDELDALVPRRDDTMS-EASARVVNTLL---------TELDGLGSSRN 618
Query: 176 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCKGIFRNDNVA-DDDIV 232
+ +I N + ++R GR+E + P R++R V + + R + D++V
Sbjct: 619 G--IYVIAATNRPDIIDPAMLRPGRLETLLFVNLPGRDERAEVLRTLIRKLPIEMTDELV 676
Query: 233 KLVDTFPGQSIDFFGALRAR 252
+L + G S G+L R
Sbjct: 677 ELARSCEGFSGADLGSLLRR 696
>gi|448343686|ref|ZP_21532607.1| proteasome-activating nucleotidase [Natrinema gari JCM 14663]
gi|445622602|gb|ELY76053.1| proteasome-activating nucleotidase [Natrinema gari JCM 14663]
Length = 405
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 45/168 (26%), Positives = 73/168 (43%), Gaps = 16/168 (9%)
Query: 64 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 123
++G G GK+ + V + I M+ EL GE AKL+R + D+ ++ +
Sbjct: 188 LYGPPGTGKTMLAKAVANQTDATFIKMAGSELVHKFIGEGAKLVRDLF----DVAREHEP 243
Query: 124 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 183
+ I+++DA A + T T + V T+M + L M EE + II
Sbjct: 244 AVIFIDEIDAIAAKR--TESKTSGDAEVQRTMMQL--------LSEMDGFEERGEIRIIA 293
Query: 184 TGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCKGIFRNDNVADD 229
N F L ++R GR ++ P E R + + R NV+DD
Sbjct: 294 ATNRFDMLDRAILRPGRFDRLIEVPKPNAEGREIIFEIHTRGMNVSDD 341
>gi|393221022|gb|EJD06507.1| ribosome biogenesis ATPase RIX7 [Fomitiporia mediterranea MF3/22]
Length = 773
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 45/181 (24%), Positives = 79/181 (43%), Gaps = 19/181 (10%)
Query: 56 IKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 115
I P + +WG G GK+ + V + G N I + EL + GE + +RQ + A
Sbjct: 495 ISAPCGVLLWGPPGCGKTLLAKAVANESGANFISVKGPELLNKYVGESERAVRQVFARA- 553
Query: 116 DIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEE 175
+ C + ++LDA R + + + +MVN L +L G+ +E
Sbjct: 554 ---RASSPCVIFFDELDALVPRRDDSLSES-SARMVNTLL---------TELDGL---DE 597
Query: 176 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCKGIFRNDNVADDDIVK 233
V +I N L + R GR++K + PT ++R+ + + + R +A D K
Sbjct: 598 RRGVHVIGATNRPDMLDPAMCRPGRLDKLLYVDLPTADERVEITRTVSRTVPLAGGDEAK 657
Query: 234 L 234
+
Sbjct: 658 V 658
Score = 43.9 bits (102), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 39/147 (26%), Positives = 70/147 (47%), Gaps = 13/147 (8%)
Query: 56 IKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 115
++ P + + G G GK+ + ++G+ I +SA + SG +GE K +R + EA
Sbjct: 155 VQPPRGVLLHGPPGCGKTLLANAIAGELGVPFISVSAPSIVSGMSGESEKTLRDTFEEA- 213
Query: 116 DIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEE 175
KK C L I+++DA + + Q + ++V A + D+ + ++K +
Sbjct: 214 ---KKNAPCLLFIDEIDAITPKR-ESAQREMERRIV-AQFLTCMDDMS-------WDKTD 261
Query: 176 NPRVPIIVTGNDFSTLYAPLIRDGRME 202
N V +I N +L A L R GR +
Sbjct: 262 NKPVIVIGATNRPDSLDAALRRAGRFD 288
>gi|418461396|ref|ZP_13032471.1| AAA+ family ATPase [Saccharomonospora azurea SZMC 14600]
gi|359738499|gb|EHK87384.1| AAA+ family ATPase [Saccharomonospora azurea SZMC 14600]
Length = 741
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 49/225 (21%), Positives = 96/225 (42%), Gaps = 25/225 (11%)
Query: 10 MSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLV--VHITKNFMSLPNIKVPLILGIWGG 67
MS+ D ++ G LD+ D + + + ++ + +F L + P + I+G
Sbjct: 467 MSTTDTLATG--GLTLDDVGDMAEVKQSLTETVLWPLRYPDSFARL-GVAPPRGVLIYGP 523
Query: 68 KGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLM 127
G GK+F + +N + EL GE + +R+ +R AA+ +
Sbjct: 524 PGNGKTFLVRALAGTGALNVFSVKGAELMDKWVGESERAVRELFRRAAE----AAPSLIF 579
Query: 128 INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGND 187
++++DA A R G ++ ++++V A L + + E R ++V +
Sbjct: 580 LDEVDALAPRRGQSSDSGASDRVVAALLTEL-------------DGVEPLRDVVVVGATN 626
Query: 188 FSTLYAP-LIRDGRMEKFYWAPTR--EDRIGVCKGIFRNDNVADD 229
L P L+R GR+E+ + P + R + + RN +A D
Sbjct: 627 RPELVDPALLRPGRLERLVYVPPPDVQARAAILRATARNTPLAPD 671
>gi|225216858|gb|ACN85156.1| 26S protease regulatory subunit S10B [Oryza nivara]
Length = 401
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 47/194 (24%), Positives = 93/194 (47%), Gaps = 20/194 (10%)
Query: 56 IKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 115
IK P + ++G G GK+ + + + N + + + + GE A+LIR+ + A
Sbjct: 172 IKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKIVSSAIIDKYIGESARLIREMFSYA- 230
Query: 116 DIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEE 175
++ + C + ++++DA GR ++ T ++ + TLM + + QL G +E
Sbjct: 231 ---REHQPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QLDGF---DE 277
Query: 176 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCK----GIFRNDNVADD 229
+V +I+ N L L+R GR+++ P + R+ V K GI ++ + +
Sbjct: 278 LGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEVLKIHAAGIAKHGEIDYE 337
Query: 230 DIVKLVDTFPGQSI 243
+VKL + F G +
Sbjct: 338 AVVKLAEGFNGADL 351
>gi|293333701|ref|NP_001169629.1| uncharacterized protein LOC100383510 [Zea mays]
gi|224030533|gb|ACN34342.1| unknown [Zea mays]
gi|413926226|gb|AFW66158.1| hypothetical protein ZEAMMB73_031713 [Zea mays]
Length = 400
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 48/194 (24%), Positives = 92/194 (47%), Gaps = 20/194 (10%)
Query: 56 IKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 115
IK P + ++G G GK+ + + + N + + + + GE A+LIR+ + A
Sbjct: 171 IKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKIVSSAIIDKYIGESARLIREMFGYAR 230
Query: 116 DIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEE 175
D + C + ++++DA GR ++ T ++ + TLM + + QL G +E
Sbjct: 231 D----HQPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QLDGF---DE 276
Query: 176 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCK----GIFRNDNVADD 229
+V +I+ N L L+R GR+++ P + R+ V K GI ++ + +
Sbjct: 277 LGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEVLKIHAAGIAKHGEIDYE 336
Query: 230 DIVKLVDTFPGQSI 243
+VKL + F G +
Sbjct: 337 AVVKLAEGFNGADL 350
>gi|160331227|ref|XP_001712321.1| prsS6 [Hemiselmis andersenii]
gi|159765768|gb|ABW97996.1| prsS6 [Hemiselmis andersenii]
Length = 375
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 48/186 (25%), Positives = 83/186 (44%), Gaps = 16/186 (8%)
Query: 46 ITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAK 105
I KNF I +P + ++G G GK+ + V K + I + E GE K
Sbjct: 149 INKNFYEKIGIDLPKGVMLFGPPGTGKTLVVKAVALKTKASFIKTAGSEFVQKYLGEGPK 208
Query: 106 LIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCV 165
++R ++ I +K + I+++DA A R T ++ V LM + +
Sbjct: 209 MVRDLFK----IARKNSPSIVFIDEIDAIATRRFDAQ--TGADREVQRILMELLN----- 257
Query: 166 QLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKF--YWAPTREDRIGVCKGIFRN 223
Q+ G EEN V +I+ N TL L+R GR+++ + P R ++ + + + N
Sbjct: 258 QMDGF---EENKNVRVIMATNRIDTLDPALLRPGRIDRKIGFPLPNRREKRFIFQTLTSN 314
Query: 224 DNVADD 229
N+ D
Sbjct: 315 MNLGTD 320
>gi|115468870|ref|NP_001058034.1| Os06g0607800 [Oryza sativa Japonica Group]
gi|51090352|dbj|BAD35613.1| putative 26S proteasome regulatory particle triple-A ATPase
subunit4 [Oryza sativa Japonica Group]
gi|51091388|dbj|BAD36121.1| putative 26S proteasome regulatory particle triple-A ATPase
subunit4 [Oryza sativa Japonica Group]
gi|113596074|dbj|BAF19948.1| Os06g0607800 [Oryza sativa Japonica Group]
gi|125597814|gb|EAZ37594.1| hypothetical protein OsJ_21925 [Oryza sativa Japonica Group]
gi|215693190|dbj|BAG88572.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215694896|dbj|BAG90087.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 401
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 47/194 (24%), Positives = 93/194 (47%), Gaps = 20/194 (10%)
Query: 56 IKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 115
IK P + ++G G GK+ + + + N + + + + GE A+LIR+ + A
Sbjct: 172 IKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKIVSSAIIDKYIGESARLIREMFSYA- 230
Query: 116 DIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEE 175
++ + C + ++++DA GR ++ T ++ + TLM + + QL G +E
Sbjct: 231 ---REHQPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QLDGF---DE 277
Query: 176 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCK----GIFRNDNVADD 229
+V +I+ N L L+R GR+++ P + R+ V K GI ++ + +
Sbjct: 278 LGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEVLKIHAAGIAKHGEIDYE 337
Query: 230 DIVKLVDTFPGQSI 243
+VKL + F G +
Sbjct: 338 AVVKLAEGFNGADL 351
>gi|345004569|ref|YP_004807422.1| proteasome-activating nucleotidase [halophilic archaeon DL31]
gi|344320195|gb|AEN05049.1| Proteasome-activating nucleotidase [halophilic archaeon DL31]
Length = 404
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 45/168 (26%), Positives = 74/168 (44%), Gaps = 16/168 (9%)
Query: 64 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 123
+ G G GK+ + V A+ + I M+ EL GE AKL+R + ++ + +
Sbjct: 187 LHGPPGTGKTLLAKAVAAETNASFIKMAGSELVHKFIGEGAKLVRDLF----EVARDNEP 242
Query: 124 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 183
+ I+++DA A + T T + V T+M + L M +E + II
Sbjct: 243 AVIFIDEIDAIASKR--TDSKTSGDAEVQRTMMQL--------LSEMDGFDERGDIRIIA 292
Query: 184 TGNDFSTLYAPLIRDGRMEKFYWAPT--REDRIGVCKGIFRNDNVADD 229
N F L ++R GR ++ P E R + + R+ NVADD
Sbjct: 293 ATNRFDMLDEAILRPGRFDRLIEVPKPDAEGRKLIFEIHTRDMNVADD 340
>gi|448719557|ref|ZP_21703127.1| proteasome-activating nucleotidase [Halobiforma nitratireducens JCM
10879]
gi|445783258|gb|EMA34092.1| proteasome-activating nucleotidase [Halobiforma nitratireducens JCM
10879]
Length = 405
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 82/186 (44%), Gaps = 20/186 (10%)
Query: 64 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 123
++G G GK+ + V + I M+ EL GE AKL+R ++ + ++ +
Sbjct: 188 LYGPPGTGKTMLAKAVANQTDATFIKMAGSELVHKFIGEGAKLVRDLFK----VAREHEP 243
Query: 124 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 183
+ I+++DA A + T T + V T+M + L M EE + II
Sbjct: 244 AVIFIDEIDAIAAKR--TESKTSGDAEVQRTMMQL--------LSEMDGFEERGEIRIIA 293
Query: 184 TGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCKGIFRNDNVADD----DIVKLVDT 237
N F L ++R GR ++ P++E R + + R NV+D+ D+ + V+
Sbjct: 294 ATNRFDMLDRAILRPGRFDRLIEVPKPSKEGRELIFEIHTRGMNVSDEVDFADLAEEVED 353
Query: 238 FPGQSI 243
G I
Sbjct: 354 ASGADI 359
>gi|326482765|gb|EGE06775.1| ribosome biogenesis ATPase RIX7 [Trichophyton equinum CBS 127.97]
Length = 743
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 48/191 (25%), Positives = 87/191 (45%), Gaps = 16/191 (8%)
Query: 42 LVVHITK-NFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNA 100
+V+ +T+ S N++ P + + G G GK+ A++G+ I +SA + SG +
Sbjct: 193 IVLPMTRPQIFSASNVQPPRGVLLHGPPGCGKTMIANAFAAELGVPFIAISAPSIISGMS 252
Query: 101 GEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIAD 160
GE K +R + EA KK C + ++++DA + + Q + ++V L
Sbjct: 253 GESEKALRDHFEEA----KKVAPCLIFMDEIDAITPKR-ESAQREMEKRIVAQLL----- 302
Query: 161 NPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKF--YWAPTREDRIGVCK 218
TC+ + + P V ++ N +L L R GR +K P+ R + +
Sbjct: 303 --TCMDDLALAKTDGKP-VIVLAATNRPDSLDPALRRGGRFDKEINLTVPSEPVREQILR 359
Query: 219 GIFRNDNVADD 229
+ R N+ADD
Sbjct: 360 ALTREMNLADD 370
Score = 43.9 bits (102), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 47/200 (23%), Positives = 84/200 (42%), Gaps = 19/200 (9%)
Query: 56 IKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 115
I P + +WG G GK+ + V + N I + EL + GE + +RQ + A
Sbjct: 513 ISAPTGVLLWGPPGCGKTLLAKAVANESRANFISIKGPELLNKYVGESERAVRQVFSRAR 572
Query: 116 DIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEE 175
+ C + ++LDA R T + ++VN L +L G+ +
Sbjct: 573 SSVP----CVIFFDELDALVPRRDDTMS-EASARVVNTLL---------TELDGLGSSRN 618
Query: 176 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCKGIFRNDNVA-DDDIV 232
+ +I N + ++R GR+E + P R++R V + + R + D++V
Sbjct: 619 G--IYVIAATNRPDIIDPAMLRPGRLETLLFVNLPGRDERAEVLRTLIRKLPIEMTDELV 676
Query: 233 KLVDTFPGQSIDFFGALRAR 252
+L + G S G+L R
Sbjct: 677 ELARSCEGFSGADLGSLLRR 696
>gi|448434482|ref|ZP_21586282.1| proteasome-activating nucleotidase [Halorubrum tebenquichense DSM
14210]
gi|445685110|gb|ELZ37471.1| proteasome-activating nucleotidase [Halorubrum tebenquichense DSM
14210]
Length = 405
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 47/175 (26%), Positives = 77/175 (44%), Gaps = 16/175 (9%)
Query: 56 IKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 115
I+ P + ++G G GK+ + V + I M+ EL GE AKL+R +
Sbjct: 180 IQPPSGVLLYGPPGTGKTMLAKAVANETDATFIKMAGSELVHKFIGEGAKLVRDLF---- 235
Query: 116 DIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEE 175
++ ++ + L I+++DA A + T T + V T+M + L M +E
Sbjct: 236 EVARENQPAVLFIDEIDAIASKR--TDSKTSGDAEVQRTMMQL--------LSEMDGFDE 285
Query: 176 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRED--RIGVCKGIFRNDNVAD 228
V II N F L ++R GR ++ P E R + + RN N+AD
Sbjct: 286 RGEVRIIAATNRFDMLDPAILRPGRFDRLIEVPKPETAGREIIFQIHTRNMNLAD 340
>gi|354611822|ref|ZP_09029778.1| Proteasome-activating nucleotidase [Halobacterium sp. DL1]
gi|353196642|gb|EHB62144.1| Proteasome-activating nucleotidase [Halobacterium sp. DL1]
Length = 405
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 47/168 (27%), Positives = 72/168 (42%), Gaps = 16/168 (9%)
Query: 64 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 123
+ G G GK+ + V A+ I M+ EL GE AKL+R ++ A D +
Sbjct: 187 LHGPPGTGKTLMAKAVAAQTDATFIKMAGSELVHKFIGEGAKLVRDLFQVARD----HEP 242
Query: 124 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 183
+ I+++DA A + T T + V T+M + L M +E + II
Sbjct: 243 AVVFIDEIDAIASKR--TDSKTSGDAEVQRTMMQL--------LSEMDGFDERGDIRIIA 292
Query: 184 TGNDFSTLYAPLIRDGRMEKFYWAPTR--EDRIGVCKGIFRNDNVADD 229
N F L ++R GR ++ P E R + + R NVADD
Sbjct: 293 ATNRFDMLDRAILRPGRFDRLIEVPNPDVEGREKIFRIHTREMNVADD 340
>gi|405122542|gb|AFR97308.1| ATPase [Cryptococcus neoformans var. grubii H99]
Length = 405
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 46/186 (24%), Positives = 88/186 (47%), Gaps = 20/186 (10%)
Query: 64 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 123
++G G GK+ V A + N + + + + GE A+LIR+ + A ++ +
Sbjct: 188 LYGPPGTGKTLLARAVAATLNTNFLKVVSSAIVDKYIGESARLIREMFAYA----REHEP 243
Query: 124 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 183
C + ++++DA GR +Q T ++ + TLM + + Q+ G + R II+
Sbjct: 244 CVIFMDEIDAIGGRR--FSQGTSADREIQRTLMELLN-----QMDGF---DSLGRTKIIM 293
Query: 184 TGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGV----CKGIFRNDNVADDDIVKLVDT 237
N TL L+R GR+++ P + R+ + K + ++ ++ + IVKL D
Sbjct: 294 ATNRPDTLDPALLRPGRLDRKIEIPLPNEQGRLEILKIHAKKVNKSGDIDYEAIVKLSDG 353
Query: 238 FPGQSI 243
F G +
Sbjct: 354 FNGADL 359
>gi|381163299|ref|ZP_09872529.1| AAA+ family ATPase [Saccharomonospora azurea NA-128]
gi|379255204|gb|EHY89130.1| AAA+ family ATPase [Saccharomonospora azurea NA-128]
Length = 767
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 49/225 (21%), Positives = 96/225 (42%), Gaps = 25/225 (11%)
Query: 10 MSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLV--VHITKNFMSLPNIKVPLILGIWGG 67
MS+ D ++ G LD+ D + + + ++ + +F L + P + I+G
Sbjct: 493 MSTTDTLATG--GLTLDDVGDMAEVKQSLTETVLWPLRYPDSFARL-GVAPPRGVLIYGP 549
Query: 68 KGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLM 127
G GK+F + +N + EL GE + +R+ +R AA+ +
Sbjct: 550 PGNGKTFLVRALAGTGALNVFSVKGAELMDKWVGESERAVRELFRRAAE----AAPSLIF 605
Query: 128 INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGND 187
++++DA A R G ++ ++++V A L + + E R ++V +
Sbjct: 606 LDEVDALAPRRGQSSDSGASDRVVAALLTEL-------------DGVEPLRDVVVVGATN 652
Query: 188 FSTLYAP-LIRDGRMEKFYWAPTR--EDRIGVCKGIFRNDNVADD 229
L P L+R GR+E+ + P + R + + RN +A D
Sbjct: 653 RPELVDPALLRPGRLERLVYVPPPDVQARAAILRATARNTPLAPD 697
>gi|226505536|ref|NP_001148485.1| 26S protease regulatory subunit S10B [Zea mays]
gi|194702936|gb|ACF85552.1| unknown [Zea mays]
gi|195619706|gb|ACG31683.1| 26S protease regulatory subunit S10B [Zea mays]
gi|413936158|gb|AFW70709.1| 26S protease regulatory subunit S10B [Zea mays]
Length = 400
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 48/194 (24%), Positives = 92/194 (47%), Gaps = 20/194 (10%)
Query: 56 IKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 115
IK P + ++G G GK+ + + + N + + + + GE A+LIR+ + A
Sbjct: 171 IKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKIVSSAIIDKYIGESARLIREMFGYAR 230
Query: 116 DIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEE 175
D + C + ++++DA GR ++ T ++ + TLM + + QL G +E
Sbjct: 231 D----HQPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QLDGF---DE 276
Query: 176 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCK----GIFRNDNVADD 229
+V +I+ N L L+R GR+++ P + R+ V K GI ++ + +
Sbjct: 277 LGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEVLKIHAAGIAKHGEIDYE 336
Query: 230 DIVKLVDTFPGQSI 243
+VKL + F G +
Sbjct: 337 AVVKLAEGFNGADL 350
>gi|308160565|gb|EFO63046.1| Transitional endoplasmic reticulum ATPase [Giardia lamblia P15]
Length = 801
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 55/225 (24%), Positives = 96/225 (42%), Gaps = 29/225 (12%)
Query: 24 NLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGI--WGGKGQGKSFQCELVFA 81
+LD+ I L A +D+ ++ KN + + GI + GQGK+ C+ + A
Sbjct: 505 SLDD-IGALDFLKAELDRYLLQPLKNPERFERLGLNRFSGIIMFSVPGQGKTLICKALSA 563
Query: 82 KMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGT 141
K IN I + EL + GE + IR + A + C L +++ D+ A R G
Sbjct: 564 KAEINFISVKGPELLNMYYGESERAIRNVFARA----RASAPCILFLDEFDSLAKRRGSG 619
Query: 142 TQYT-VNNQMVNATLMNIADNPTCVQLPGMYN----------KEENPRVPIIVTGNDFST 190
+ V++++VN L +L G++N K ++ II N
Sbjct: 620 GSSSDVSDKVVNTLL---------TELDGLHNNLSGEHSLNAKNAQDQIFIIAATNRIDI 670
Query: 191 LYAPLIRDGRMEKFYWA--PTREDRIGVCKGIFRNDNVADDDIVK 233
+ L+R GR +K + P EDR+ + I ++ D ++
Sbjct: 671 IDPGLLRPGRFDKIIYIPLPNLEDRVNILYTIITRRRISLDKTLQ 715
>gi|110669001|ref|YP_658812.1| proteasome-activating nucleotidase [Haloquadratum walsbyi DSM
16790]
gi|109626748|emb|CAJ53215.1| proteasome-activating nucleotidase [Haloquadratum walsbyi DSM
16790]
Length = 410
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 46/186 (24%), Positives = 80/186 (43%), Gaps = 20/186 (10%)
Query: 64 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 123
+ G G GK+ + V + I M+ EL GE ++L+R + D+ + +
Sbjct: 191 LHGPPGTGKTMLAKAVANETDATFIKMAGSELVRKFIGEGSRLVRDLF----DLAAEREP 246
Query: 124 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 183
+ I+++DA A + T T + V T+M + L M +E + II
Sbjct: 247 AVIFIDEIDAVASKR--TDSKTSGDAEVQRTMMQL--------LSEMDGFDERGEIRIIA 296
Query: 184 TGNDFSTLYAPLIRDGRMEKFYWAPT--REDRIGVCKGIFRNDNVADD----DIVKLVDT 237
N F L ++R GR ++ P E R + + R+ NVADD ++V +D
Sbjct: 297 ATNRFDMLDEAILRPGRFDRLIEVPKPGHEGREQILEIHTRDMNVADDVDFGELVSDIDE 356
Query: 238 FPGQSI 243
+ G +
Sbjct: 357 YSGADL 362
>gi|399575289|ref|ZP_10769047.1| proteasome-activating nucleotidase [Halogranum salarium B-1]
gi|399239557|gb|EJN60483.1| proteasome-activating nucleotidase [Halogranum salarium B-1]
Length = 401
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 45/168 (26%), Positives = 73/168 (43%), Gaps = 16/168 (9%)
Query: 64 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 123
++G G GK+ + V + I M+ EL GE AKL+R + ++ ++ +
Sbjct: 184 LYGPPGTGKTMLAKAVANQTDATFIKMAGSELVHKFIGEGAKLVRDLF----EVARENEP 239
Query: 124 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 183
L I+++DA A + T T + V T+M + L M +E + II
Sbjct: 240 AVLFIDEIDAIASKR--TDSKTSGDAEVQRTMMQL--------LAEMDGFDERGEIRIIA 289
Query: 184 TGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCKGIFRNDNVADD 229
N F L ++R GR ++ P E R + + RN NV DD
Sbjct: 290 ATNRFDMLDPAILRPGRFDRLIEVPKPNEEGREIIFQIHTRNMNVDDD 337
>gi|385804588|ref|YP_005840988.1| proteasome-activating nucleotidase [Haloquadratum walsbyi C23]
gi|339730080|emb|CCC41392.1| proteasome-activating nucleotidase [Haloquadratum walsbyi C23]
Length = 410
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 46/186 (24%), Positives = 80/186 (43%), Gaps = 20/186 (10%)
Query: 64 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 123
+ G G GK+ + V + I M+ EL GE ++L+R + D+ + +
Sbjct: 191 LHGPPGTGKTMLAKAVANETDATFIKMAGSELVRKFIGEGSRLVRDLF----DLAAEREP 246
Query: 124 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 183
+ I+++DA A + T T + V T+M + L M +E + II
Sbjct: 247 AVIFIDEIDAVASKR--TDSKTSGDAEVQRTMMQL--------LSEMDGFDERGEIRIIA 296
Query: 184 TGNDFSTLYAPLIRDGRMEKFYWAPT--REDRIGVCKGIFRNDNVADD----DIVKLVDT 237
N F L ++R GR ++ P E R + + R+ NVADD ++V +D
Sbjct: 297 ATNRFDMLDEAILRPGRFDRLIEVPKPGHEGREQILEIHTRDMNVADDVDFGELVSDIDE 356
Query: 238 FPGQSI 243
+ G +
Sbjct: 357 YSGADL 362
>gi|66801075|ref|XP_629463.1| AAA ATPase domain-containing protein [Dictyostelium discoideum AX4]
gi|74996469|sp|Q54CS8.1|PEX6_DICDI RecName: Full=Peroxisomal biogenesis factor 6; AltName:
Full=Peroxin-6
gi|60462869|gb|EAL61068.1| AAA ATPase domain-containing protein [Dictyostelium discoideum AX4]
Length = 1201
Score = 48.9 bits (115), Expect = 0.004, Method: Composition-based stats.
Identities = 54/222 (24%), Positives = 104/222 (46%), Gaps = 24/222 (10%)
Query: 64 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 123
++G G GK+ + + + +N + + EL + GE K IR+ + +A ++ K
Sbjct: 957 LFGPPGTGKTLLAKAIATECSLNFLSVKGPELINMYIGESEKNIREIFNKA----RQAKP 1012
Query: 124 CCLMINDLDAGA-GRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPII 182
C + ++LD+ A R G V +++V+ L +L GM +++ V II
Sbjct: 1013 CVIFFDELDSLAPSRGNGADSGGVMDRVVSQLL---------AELDGM---QKSSDVFII 1060
Query: 183 VTGNDFSTLYAPLIRDGRMEKFYW---APTREDRIGVCKGIFRNDNVADD-DIVKLVDTF 238
N L + L+R GR+++ + + +E++ + + + R N+ADD D+ K+V+
Sbjct: 1061 GATNRPDLLDSSLMRPGRLDRLLYLGISSEKENQFKILQALTRKFNLADDVDLRKVVENC 1120
Query: 239 PGQ--SIDFFGALRARVYDDEVRKWISGVGVGSIGKSLVNSK 278
P DF+ AL + + + I+ G I + N K
Sbjct: 1121 PMNLTGADFY-ALASDAMSNAFHERITASINGEINEEEQNQK 1161
>gi|254412421|ref|ZP_05026195.1| ATPase, AAA family protein [Coleofasciculus chthonoplastes PCC
7420]
gi|196180731|gb|EDX75721.1| ATPase, AAA family protein [Coleofasciculus chthonoplastes PCC
7420]
Length = 532
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 54/214 (25%), Positives = 94/214 (43%), Gaps = 30/214 (14%)
Query: 53 LPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYR 112
+PN K L++GI +G GKS + + + + + + G L G GE +RQ +
Sbjct: 267 IPNPKGILLVGI---QGTGKSLSAKTIAHEWRLPLLRLDTGRLFGGIVGESESRVRQMIQ 323
Query: 113 EAADIIKKGKMCCLMINDLDAGAGRMG-GTTQYTVNNQMVNATLMNIADNPTCVQLPGMY 171
+ I C L I+++D G +G G + ++ V TL+ +
Sbjct: 324 ISEAIAP----CVLWIDEIDKAFGNIGAGVDGDSGTSRRVFGTLIT-------------W 366
Query: 172 NKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APT---REDRIGVCKGIFRNDNV 226
+E+ V I+ T N+ L A L+R GR ++ ++ PT R+D V R +
Sbjct: 367 MQEKTSPVFIVATANNVQILPAELLRKGRFDEIFFLNLPTEAERKDIFKVHLQPLRPSRL 426
Query: 227 ADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRK 260
D D+ +L Q+ +F GA +V D + +
Sbjct: 427 RDFDLARLAR----QAKNFSGAEIEQVIIDAMHR 456
>gi|448363225|ref|ZP_21551828.1| proteasome-activating nucleotidase [Natrialba asiatica DSM 12278]
gi|445647194|gb|ELZ00174.1| proteasome-activating nucleotidase [Natrialba asiatica DSM 12278]
Length = 405
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 44/168 (26%), Positives = 74/168 (44%), Gaps = 16/168 (9%)
Query: 64 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 123
++G G GK+ + V + I M+ EL GE AKL+R ++ + ++ +
Sbjct: 188 LYGPPGTGKTMLAKAVANQTNATFIKMAGSELVHKFIGEGAKLVRDLFK----VAREHEP 243
Query: 124 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 183
+ I+++DA A + T T + V T+M + L M E+ + II
Sbjct: 244 AVIFIDEIDAIAAKR--TESKTSGDAEVQRTMMQL--------LSEMDGFEDRGEIRIIA 293
Query: 184 TGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCKGIFRNDNVADD 229
N F L ++R GR ++ P +E R + + R NVADD
Sbjct: 294 ATNRFDMLDRAILRPGRFDRLIEVPKPNQEGREIIFEIHTRGMNVADD 341
>gi|403215874|emb|CCK70372.1| hypothetical protein KNAG_0E01040 [Kazachstania naganishii CBS
8797]
Length = 785
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 54/200 (27%), Positives = 92/200 (46%), Gaps = 28/200 (14%)
Query: 56 IKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 115
I P + +WG G GK+ + V + N I + EL + GE + IRQ + A
Sbjct: 514 INAPAGVLLWGPPGCGKTLLAKAVANESRANFISIKGPELLNKYVGESERAIRQVFTRAR 573
Query: 116 DIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEE 175
I C + ++LDA R T+ ++++VN L +L G+
Sbjct: 574 ASIP----CVIFFDELDALVPRR-DTSLSESSSRVVNTLL---------TELDGL----- 614
Query: 176 NPRVPIIVTG--NDFSTLYAPLIRDGRMEK--FYWAPTREDRIGVCKGIFRNDN--VADD 229
N R I V G N + ++R GR++K F PT+E+++ + + + R++ VA D
Sbjct: 615 NDRRGIFVIGATNRPDMIDPAMLRPGRLDKTIFIELPTKEEKLDILQTLLRSNGTPVAHD 674
Query: 230 -DIVKLVDTFPGQSIDFFGA 248
D ++++ F Q +F GA
Sbjct: 675 IDFAEIINDFRCQ--NFSGA 692
Score = 42.0 bits (97), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 61/243 (25%), Positives = 100/243 (41%), Gaps = 34/243 (13%)
Query: 64 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 123
+ G G GK+ + ++ + I +SA + SG +GE K IR + EA I
Sbjct: 211 LHGPPGCGKTSIANALAGELKVPFISVSAPSVVSGMSGESEKKIRDLFEEAQQIAP---- 266
Query: 124 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 183
C + +++DA + G Q + ++V A L+ D T + G P+IV
Sbjct: 267 CLIFFDEIDAITPKRDGGAQREMEKRIV-AQLLTSMDELTLQKTGGK---------PVIV 316
Query: 184 TG--NDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCKGIFRNDNV-ADDDIVKLVDTF 238
G N +L A L R GR ++ P R+ + K + + + D ++L
Sbjct: 317 IGATNRPDSLDAALRRAGRFDREICLNVPNEVSRLHILKKLSSTLKLDGEIDFLQLAKLT 376
Query: 239 PGQSIDFFGALRARVYDDEVRKWISGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYG 298
PG F GA +++ I+ G +I K + + T E R T +L
Sbjct: 377 PG----FVGA--------DLKALITAAGTCAI-KRIFEHSVVSDTMEVDRDT--ELKNTA 421
Query: 299 NMI 301
NMI
Sbjct: 422 NMI 424
>gi|340502234|gb|EGR28943.1| vesicular transport protein cdc48, putative [Ichthyophthirius
multifiliis]
Length = 670
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 59/252 (23%), Positives = 102/252 (40%), Gaps = 37/252 (14%)
Query: 16 ISQGLRTYNLDNTIDGLYIAPAF-------MDKLVVHITKNFMSLP----------NIKV 58
I + L+ +G I P+ +D L +T N + LP NI
Sbjct: 374 IEKALKEIQPTGKREGFAIIPSVTWDDIGALDDLKKELTNNII-LPILQPQKFEVFNISN 432
Query: 59 PLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADII 118
P + ++G G GK+ + V N I + EL + GE K +RQ + A
Sbjct: 433 PSGVLMYGPPGCGKTLLAKAVANASKANFISVKGPELLNKYVGESEKSVRQVFSRA---- 488
Query: 119 KKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPR 178
K C + +++DA + G + V ++VN+ L +L G +++
Sbjct: 489 KTSAPCIIFFDEIDALVPKRGSDSTNQVTERVVNSLL---------AELDGFEGRKQ--- 536
Query: 179 VPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCKGIFRNDNVADDDIVKLVD 236
V +I N + L+R GR++K + P E++I + + + + V DD I
Sbjct: 537 VFVIAATNRPDIIDPALLRGGRLDKLLYVPLPANEEKILILEALLKKTPV-DDSICLRSI 595
Query: 237 TFPGQSIDFFGA 248
F ++ F GA
Sbjct: 596 AFDKRTEGFSGA 607
>gi|296108730|ref|YP_003615679.1| ATPase AAA [methanocaldococcus infernus ME]
gi|295433544|gb|ADG12715.1| AAA family ATPase, CDC48 subfamily [Methanocaldococcus infernus ME]
Length = 903
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 43/188 (22%), Positives = 88/188 (46%), Gaps = 24/188 (12%)
Query: 64 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 123
++G G GK+ + V + G N I + E+ S GE K IR+ +++A ++
Sbjct: 491 LFGPPGTGKTLLAKAVANEAGANFISVKGPEIFSKWVGESEKAIREIFKKA----RQNAP 546
Query: 124 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 183
C + +++DA A + G V +++VN L +L G+ E P+ +++
Sbjct: 547 CIIFFDEIDAIAPKRGRDISSGVTDKVVNQIL---------TELDGL----EEPKDVVVI 593
Query: 184 TGNDFSTLYAP-LIRDGRMEKFYWAPTRED--RIGVCKGIFRNDNVADD----DIVKLVD 236
+ + P L+R GR+++ P ++ R+ + K R ++A+D ++ K +
Sbjct: 594 AATNRPDIIDPALLRPGRLDRIILVPVPDEKARLDIFKIHTRGMSLAEDVDLEELAKKTE 653
Query: 237 TFPGQSID 244
+ G I+
Sbjct: 654 GYTGADIE 661
>gi|2960216|emb|CAA11285.1| 26S proteasome regulatory ATPase subunit 10b (S10b) [Manduca sexta]
Length = 396
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 46/186 (24%), Positives = 89/186 (47%), Gaps = 20/186 (10%)
Query: 64 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 123
++G G GK+ V +++ N + + + + GE A+LIR+ + A D +
Sbjct: 179 LYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIREMFNYARD----HQP 234
Query: 124 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 183
C + ++++DA GR ++ T ++ + TLM + + Q+ G + +V II+
Sbjct: 235 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGF---DSLGQVKIIM 284
Query: 184 TGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCK----GIFRNDNVADDDIVKLVDT 237
N TL L+R GR+++ P + R+ + K I ++ + + +VKL DT
Sbjct: 285 ATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLEILKIHAAPIAKHGEMDYEAVVKLSDT 344
Query: 238 FPGQSI 243
F G +
Sbjct: 345 FNGADL 350
>gi|448609636|ref|ZP_21660667.1| ATPase AAA [Haloferax mucosum ATCC BAA-1512]
gi|445746653|gb|ELZ98114.1| ATPase AAA [Haloferax mucosum ATCC BAA-1512]
Length = 587
Score = 48.5 bits (114), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 55/103 (53%), Gaps = 1/103 (0%)
Query: 56 IKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 115
I +P +L ++G G GKS+ E + ++G ++S G++ S AK ++Q + EA
Sbjct: 374 IPIPSLL-LYGPPGTGKSYLAEAIAGEIGYPYAILSGGDILSQWINASAKQVKQLFSEAK 432
Query: 116 DIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNI 158
I + + ++++D+ + GG Q+ + ++VN L ++
Sbjct: 433 AIADQTGGVVVFVDEIDSVLSKRGGANQHAEDQKVVNEFLTHL 475
>gi|336476337|ref|YP_004615478.1| AAA ATPase [Methanosalsum zhilinae DSM 4017]
gi|335929718|gb|AEH60259.1| AAA family ATPase, CDC48 subfamily [Methanosalsum zhilinae DSM
4017]
Length = 744
Score = 48.5 bits (114), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 48/197 (24%), Positives = 91/197 (46%), Gaps = 23/197 (11%)
Query: 55 NIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREA 114
N K P + ++G G GK+ + V ++ N I + EL S GE + +R+ +R+A
Sbjct: 479 NTKPPRGIMLFGPPGTGKTLLAKAVASESEANFISIKGPELLSKYVGESERAVRETFRKA 538
Query: 115 ADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKE 174
K+ + +++D+ A R G ++ V+ ++V+ L +L G+ E
Sbjct: 539 ----KQSAPTVVFFDEVDSIAPRRGMSSDSHVSERVVSQIL---------TELDGV---E 582
Query: 175 ENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCKGIFRNDNVADD-DI 231
E V I+ N + L+R GR ++ + +P ++ R + + ++DD DI
Sbjct: 583 ELKDVVIVAATNRPDIVDPALLRPGRFDRLIYVRSPDKKSREKIFSIHLKGKPLSDDVDI 642
Query: 232 VKLVDTFPGQSIDFFGA 248
+L G + D+ GA
Sbjct: 643 SELA----GMTEDYVGA 655
>gi|238882613|gb|EEQ46251.1| ribosome biogenesis ATPase RIX7 [Candida albicans WO-1]
Length = 827
Score = 48.5 bits (114), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 42/164 (25%), Positives = 76/164 (46%), Gaps = 18/164 (10%)
Query: 64 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 123
++G G GK+ + ++ + I +SA + SG +GE K +R+ + EA I
Sbjct: 232 LYGPPGCGKTTIANALAGELKVPFINISAPSVVSGMSGESEKKLREIFEEAKQIAP---- 287
Query: 124 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 183
C + ++++DA + G Q + ++V A L+ + D T + G P++V
Sbjct: 288 CLIFMDEIDAITPKRDGGAQREMEKRIV-AQLLTLMDELTLEKTGGK---------PVVV 337
Query: 184 TG--NDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCKGIFRN 223
G N +L + L R GR ++ P E RI + K + +N
Sbjct: 338 IGATNRPDSLDSALRRAGRFDREICLNVPNEEQRISILKAMTKN 381
Score = 47.8 bits (112), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 45/174 (25%), Positives = 78/174 (44%), Gaps = 23/174 (13%)
Query: 56 IKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 115
I P + +WG G GK+ + V + N I + EL + GE K +RQ ++ A
Sbjct: 553 IAAPAGVLMWGPPGCGKTLLAKAVANESRANFISIKGPELLNKYVGESEKAVRQVFQRA- 611
Query: 116 DIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEE 175
+ C + ++LDA R T+ ++++VN L +L G+
Sbjct: 612 ---RASTPCIIFFDELDALVPRR-DTSMSESSSRVVNTLL---------TELDGL----- 653
Query: 176 NPRVPIIVTG--NDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCKGIFRNDN 225
N R + V G N + ++R GR++K + PT E+R+ + K + R +N
Sbjct: 654 NDRKGVFVIGATNRPDMIDPAMLRPGRLDKTLYIELPTPEERLEILKTLVRTNN 707
>gi|159115151|ref|XP_001707799.1| Transitional endoplasmic reticulum ATPase [Giardia lamblia ATCC
50803]
gi|157435906|gb|EDO80125.1| Transitional endoplasmic reticulum ATPase [Giardia lamblia ATCC
50803]
Length = 808
Score = 48.5 bits (114), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 55/221 (24%), Positives = 94/221 (42%), Gaps = 29/221 (13%)
Query: 24 NLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGI--WGGKGQGKSFQCELVFA 81
+LD+ I L A +D+ ++ KN + + GI + GQGK+ C+ + A
Sbjct: 512 SLDD-IGALDFLKAELDRYLLQPLKNPERFERLGLNRFSGIIMFSVPGQGKTLICKALSA 570
Query: 82 KMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGT 141
K IN I + EL + GE + IR + A + C L +++ D+ A R G
Sbjct: 571 KAEINFISVKGPELLNMYYGESERAIRNVFARA----RASAPCILFLDEFDSLAKRRGSG 626
Query: 142 TQYT-VNNQMVNATLMNIADNPTCVQLPGMYN----------KEENPRVPIIVTGNDFST 190
+ V++++VN L +L G++N K ++ II N
Sbjct: 627 GSSSDVSDKVVNTLL---------TELDGLHNNLSGEHSLNAKNAQDQIFIIAATNRIDI 677
Query: 191 LYAPLIRDGRMEKFYWA--PTREDRIGVCKGIFRNDNVADD 229
+ L+R GR +K + P EDR+ + I ++ D
Sbjct: 678 IDPGLLRPGRFDKIIYIPLPNLEDRVNILYTIITRRQISLD 718
>gi|254167175|ref|ZP_04874028.1| 26S proteasome subunit P45 family [Aciduliprofundum boonei T469]
gi|197624031|gb|EDY36593.1| 26S proteasome subunit P45 family [Aciduliprofundum boonei T469]
Length = 394
Score = 48.5 bits (114), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 61/229 (26%), Positives = 90/229 (39%), Gaps = 43/229 (18%)
Query: 64 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 123
+ G G GK+ + V I EL GE AKL+R+ + D+ +K
Sbjct: 177 LAGPPGTGKTLLAKAVAHHTHATFIRTVGSELVRKYIGEGAKLVRELF----DLARKKAP 232
Query: 124 CCLMINDLDA-GAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPII 182
+ I+++DA GA R+ T ++ V TLM + +L G E V II
Sbjct: 233 SIVFIDEIDAIGARRLDMATS---GDREVQRTLMQL-----LAELDGF---EPLDNVKII 281
Query: 183 VTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCKGIFRNDNVAD---DDIVKLVDT 237
N L L+R GR ++ P E RI + K R N+ D + I K D
Sbjct: 282 AATNRPDILDEALLRPGRFDRIIQVPYPDYEARIEILKIHTRRMNLKDVNLEKIAKKTDG 341
Query: 238 FPGQSI----------------------DFFGALRARVYDDEVRKWISG 264
F G + DF A+R ++ D++RK I G
Sbjct: 342 FSGADLKVICMEAGMFAIRDERDYVTQEDFENAIRKFLHADDLRKEIPG 390
>gi|345561628|gb|EGX44716.1| hypothetical protein AOL_s00188g54 [Arthrobotrys oligospora ATCC
24927]
Length = 787
Score = 48.5 bits (114), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 57/226 (25%), Positives = 99/226 (43%), Gaps = 41/226 (18%)
Query: 56 IKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 115
I P + ++G G GK+ + V + N I + EL + GE + +RQ + A
Sbjct: 542 ITSPAGVLLYGPPGCGKTLLAKAVANESNANFISVKGPELLNKWVGESERAVRQVFMRA- 600
Query: 116 DIIKKGKMCCLMINDLDAGAG-RMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKE 174
+ + C + ++LDA AG R TT+ T +++VN L +L G+ +++
Sbjct: 601 ---RASQPCVIFFDELDALAGKREDATTEAT--SRVVNTLL---------TELDGLSDRK 646
Query: 175 ENPRVPIIVTGNDFSTLYAPLIRDGRMEK--FYWAPTREDRIGVCKGIFRNDNVADDDIV 232
V +I N + ++R GR++K F PT E+R+ + K
Sbjct: 647 G---VYVIAATNRPDMIDPAMLRPGRLDKALFVALPTAEERLDIMK-------------- 689
Query: 233 KLVDTFP-GQSIDFFGALRARVYDDEVRKWISGVGVGSIGKSLVNS 277
KL P +SID + ++ DD + SG + S+ + NS
Sbjct: 690 KLTMKMPLHESIDLW-----KIADDSRCRNFSGADLSSLVREAANS 730
>gi|241955559|ref|XP_002420500.1| ATPase of the AAA family, putative; ribosome biogenesis ATPase,
putative; ribosome export protein, putative [Candida
dubliniensis CD36]
gi|223643842|emb|CAX41579.1| ATPase of the AAA family, putative [Candida dubliniensis CD36]
Length = 830
Score = 48.5 bits (114), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 42/164 (25%), Positives = 76/164 (46%), Gaps = 18/164 (10%)
Query: 64 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 123
++G G GK+ + ++ + I +SA + SG +GE K +R+ + EA I
Sbjct: 235 LYGPPGCGKTTIANALAGELKVPFINISAPSVVSGMSGESEKKLREIFEEAKQIAP---- 290
Query: 124 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 183
C + ++++DA + G Q + ++V A L+ + D T + G P++V
Sbjct: 291 CLIFMDEIDAITPKRDGGAQREMEKRIV-AQLLTLMDELTLEKTGGK---------PVVV 340
Query: 184 TG--NDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCKGIFRN 223
G N +L + L R GR ++ P E RI + K + +N
Sbjct: 341 IGATNRPDSLDSALRRAGRFDREICLNVPNEEQRISILKAMTKN 384
Score = 47.4 bits (111), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 45/174 (25%), Positives = 78/174 (44%), Gaps = 23/174 (13%)
Query: 56 IKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 115
I P + +WG G GK+ + V + N I + EL + GE K +RQ ++ A
Sbjct: 556 IAAPAGVLMWGPPGCGKTLLAKAVANESRANFISIKGPELLNKYVGESEKAVRQVFQRA- 614
Query: 116 DIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEE 175
+ C + ++LDA R T+ ++++VN L +L G+
Sbjct: 615 ---RASTPCIIFFDELDALVPRR-DTSMSESSSRVVNTLL---------TELDGL----- 656
Query: 176 NPRVPIIVTG--NDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCKGIFRNDN 225
N R + V G N + ++R GR++K + PT E+R+ + K + R +N
Sbjct: 657 NDRKGVFVIGATNRPDMIDPAMLRPGRLDKTLYIELPTPEERLEILKTLVRTNN 710
>gi|448319916|ref|ZP_21509404.1| proteasome-activating nucleotidase [Natronococcus amylolyticus DSM
10524]
gi|445606322|gb|ELY60226.1| proteasome-activating nucleotidase [Natronococcus amylolyticus DSM
10524]
Length = 405
Score = 48.5 bits (114), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 46/176 (26%), Positives = 78/176 (44%), Gaps = 16/176 (9%)
Query: 56 IKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 115
I+ P + ++G G GK+ + V + I M+ EL GE AKL+R ++
Sbjct: 180 IEPPSGVLLYGPPGTGKTMLAKAVANQTDATFIKMAGSELVHKFIGEGAKLVRDLFK--- 236
Query: 116 DIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEE 175
+ ++ + + I+++DA A + T T + V T+M + L M E+
Sbjct: 237 -VAREHEPAVIFIDEIDAIAAKR--TESKTSGDAEVQRTMMQL--------LSEMDGFED 285
Query: 176 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCKGIFRNDNVADD 229
+ II N F L ++R GR ++ P +E R + + R NVADD
Sbjct: 286 RGEIRIIAATNRFDMLDRAILRPGRFDRLIEVPKPNQEGREIIFEIHTRGMNVADD 341
>gi|448349621|ref|ZP_21538453.1| proteasome-activating nucleotidase [Natrialba taiwanensis DSM
12281]
gi|448365819|ref|ZP_21554073.1| proteasome-activating nucleotidase [Natrialba aegyptia DSM 13077]
gi|445639414|gb|ELY92525.1| proteasome-activating nucleotidase [Natrialba taiwanensis DSM
12281]
gi|445654428|gb|ELZ07279.1| proteasome-activating nucleotidase [Natrialba aegyptia DSM 13077]
Length = 405
Score = 48.5 bits (114), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 44/168 (26%), Positives = 74/168 (44%), Gaps = 16/168 (9%)
Query: 64 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 123
++G G GK+ + V + I M+ EL GE AKL+R ++ + ++ +
Sbjct: 188 LYGPPGTGKTMLAKAVANQTNATFIKMAGSELVHKFIGEGAKLVRDLFK----VAREHEP 243
Query: 124 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 183
+ I+++DA A + T T + V T+M + L M E+ + II
Sbjct: 244 AVIFIDEIDAIAAKR--TESKTSGDAEVQRTMMQL--------LSEMDGFEDRGEIRIIA 293
Query: 184 TGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCKGIFRNDNVADD 229
N F L ++R GR ++ P +E R + + R NVADD
Sbjct: 294 ATNRFDMLDRAILRPGRFDRLIEVPKPNQEGREIIFEIHTRGMNVADD 341
>gi|390472883|ref|XP_002756429.2| PREDICTED: 26S protease regulatory subunit 10B-like [Callithrix
jacchus]
Length = 402
Score = 48.5 bits (114), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 46/186 (24%), Positives = 87/186 (46%), Gaps = 20/186 (10%)
Query: 64 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 123
++G G GK+ V +++ N + + + + GE A LIR+ + A D +
Sbjct: 185 LYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESAHLIREMFNYARD----HQP 240
Query: 124 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 183
C + ++++DA GR+ ++ T ++ + TLM + Q+ G + RV +I+
Sbjct: 241 CIIFMDEIDAIGGRL--FSEGTSADREIQRTLME-----SLNQMDGF---DTLHRVKMIM 290
Query: 184 TGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCK----GIFRNDNVADDDIVKLVDT 237
N TL L+R GR+++ P + R+ + K I ++ + + IVKL D
Sbjct: 291 ATNRPDTLDPALLRPGRLDRKIHIDLPNEQARLDILKIHAGPITKHGEIDYEAIVKLSDG 350
Query: 238 FPGQSI 243
F G +
Sbjct: 351 FNGADL 356
>gi|297839427|ref|XP_002887595.1| hypothetical protein ARALYDRAFT_895413 [Arabidopsis lyrata subsp.
lyrata]
gi|297333436|gb|EFH63854.1| hypothetical protein ARALYDRAFT_895413 [Arabidopsis lyrata subsp.
lyrata]
Length = 364
Score = 48.5 bits (114), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 46/191 (24%), Positives = 90/191 (47%), Gaps = 19/191 (9%)
Query: 56 IKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 115
+K+P + ++G G GK+ + + + + + + L S G+ + L+R+ +R A
Sbjct: 134 VKLPKGVLLYGPPGTGKTLLARAIASNIDSTFMTVVSSALLSKYLGDSSLLVREMFRYAR 193
Query: 116 DIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEE 175
D + C + ++++DA GR G+++ V + L+ + QL G E
Sbjct: 194 D----HQPCIIFMDEIDA-IGRRRGSSEGEVKTSECDRVLIELLS-----QLDGF---NE 240
Query: 176 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCK----GIFRNDNVADD 229
+V +I+ N L L+R GR++K P + R+ + K GI ++ ++ D
Sbjct: 241 LDKVKVIMATNRPDVLDPALLRPGRIDKKIEIPLPNGDSRMRILKIHASGITKHGDIDYD 300
Query: 230 DIVKLVDTFPG 240
+VKL + F G
Sbjct: 301 KVVKLSEGFNG 311
>gi|68470308|ref|XP_720658.1| hypothetical protein CaO19.11695 [Candida albicans SC5314]
gi|68470569|ref|XP_720530.1| hypothetical protein CaO19.4219 [Candida albicans SC5314]
gi|40362746|gb|AAR84642.1| AAA ATPase [Candida albicans]
gi|46442402|gb|EAL01691.1| hypothetical protein CaO19.4219 [Candida albicans SC5314]
gi|46442537|gb|EAL01825.1| hypothetical protein CaO19.11695 [Candida albicans SC5314]
Length = 827
Score = 48.5 bits (114), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 42/164 (25%), Positives = 76/164 (46%), Gaps = 18/164 (10%)
Query: 64 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 123
++G G GK+ + ++ + I +SA + SG +GE K +R+ + EA I
Sbjct: 232 LYGPPGCGKTTIANALAGELKVPFINISAPSVVSGMSGESEKKLREIFEEAKQIAP---- 287
Query: 124 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 183
C + ++++DA + G Q + ++V A L+ + D T + G P++V
Sbjct: 288 CLIFMDEIDAITPKRDGGAQREMEKRIV-AQLLTLMDELTLEKTGGK---------PVVV 337
Query: 184 TG--NDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCKGIFRN 223
G N +L + L R GR ++ P E RI + K + +N
Sbjct: 338 IGATNRPDSLDSALRRAGRFDREICLNVPNEEQRISILKAMTKN 381
Score = 47.0 bits (110), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 45/174 (25%), Positives = 77/174 (44%), Gaps = 23/174 (13%)
Query: 56 IKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 115
I P + +WG G GK+ + V + N I + EL + GE K +RQ ++ A
Sbjct: 553 IAAPAGVLMWGPPGCGKTLLAKAVANESRANFISIKGPELLNKYVGESEKAVRQVFQRA- 611
Query: 116 DIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEE 175
+ C + ++LDA R T+ ++++VN L +L G+
Sbjct: 612 ---RASTPCIIFFDELDALVPRR-DTSMSESSSRVVNTLL---------TELDGL----- 653
Query: 176 NPRVPIIVTG--NDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCKGIFRNDN 225
N R + V G N + ++R GR++K + PT E+R+ + K + R N
Sbjct: 654 NDRKGVFVIGATNRPDMIDPAMLRPGRLDKTLYIELPTPEERLEILKTLVRTSN 707
>gi|452823572|gb|EME30581.1| AAA-type ATPase [Galdieria sulphuraria]
Length = 699
Score = 48.5 bits (114), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 43/189 (22%), Positives = 84/189 (44%), Gaps = 11/189 (5%)
Query: 44 VHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEP 103
+H + F +L + P + ++G G GK+ + + + G N I + EL + GE
Sbjct: 443 IHHPERFEAL-GLSRPAGVLLYGPPGCGKTLLAKAIARESGANFISIKGPELLNKYVGES 501
Query: 104 AKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNAT-LMNIADNP 162
+ +R+ ++ + C + ++LDA A R GG YT + +++ N
Sbjct: 502 ERAVRRVFQRG----RASAPCIIFFDELDALAPRRGGFASYTDSESFGSSSGASERVVNQ 557
Query: 163 TCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRED--RIGVCKGI 220
+L G+ E +V +I N + ++R GR++K + P + R + + +
Sbjct: 558 LLTELDGV---EARSQVFVIAATNRPDMIDPAMLRPGRLDKLLFVPLPDKYGRKAILETL 614
Query: 221 FRNDNVADD 229
R +ADD
Sbjct: 615 TRKMPLADD 623
>gi|114052605|ref|NP_001040484.1| 26S proteasome regulatory ATPase subunit 10B [Bombyx mori]
gi|95103080|gb|ABF51481.1| 26S proteasome regulatory ATPase subunit 10B [Bombyx mori]
Length = 396
Score = 48.5 bits (114), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 46/186 (24%), Positives = 89/186 (47%), Gaps = 20/186 (10%)
Query: 64 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 123
++G G GK+ V +++ N + + + + GE A+LIR+ + A D +
Sbjct: 179 LYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIREMFNYARD----HQP 234
Query: 124 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 183
C + ++++DA GR ++ T ++ + TLM + + Q+ G + +V II+
Sbjct: 235 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGF---DSLGQVKIIM 284
Query: 184 TGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCK----GIFRNDNVADDDIVKLVDT 237
N TL L+R GR+++ P + R+ + K I ++ + + +VKL DT
Sbjct: 285 ATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLEILKIHASPIAKHGEMDYEAVVKLSDT 344
Query: 238 FPGQSI 243
F G +
Sbjct: 345 FNGADL 350
>gi|357123904|ref|XP_003563647.1| PREDICTED: 26S protease regulatory subunit S10B homolog B-like
[Brachypodium distachyon]
Length = 400
Score = 48.5 bits (114), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 47/194 (24%), Positives = 93/194 (47%), Gaps = 20/194 (10%)
Query: 56 IKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 115
IK P + ++G G GK+ + + + N + + + + GE A+LIR+ + A
Sbjct: 171 IKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKIVSSAIIDKYIGESARLIREIFNYA- 229
Query: 116 DIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEE 175
++ + C + ++++DA GR ++ T ++ + TLM + + QL G +E
Sbjct: 230 ---REHQPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QLDGF---DE 276
Query: 176 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCK----GIFRNDNVADD 229
+V +I+ N L L+R GR+++ P + R+ V K GI ++ + +
Sbjct: 277 LGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEVLKIHASGIAKHGEIDYE 336
Query: 230 DIVKLVDTFPGQSI 243
+VKL + F G +
Sbjct: 337 AVVKLAEGFNGADL 350
>gi|289582097|ref|YP_003480563.1| 26S proteasome subunit P45 family [Natrialba magadii ATCC 43099]
gi|448282489|ref|ZP_21473775.1| proteasome-activating nucleotidase [Natrialba magadii ATCC 43099]
gi|289531650|gb|ADD06001.1| 26S proteasome subunit P45 family [Natrialba magadii ATCC 43099]
gi|445576031|gb|ELY30490.1| proteasome-activating nucleotidase [Natrialba magadii ATCC 43099]
Length = 405
Score = 48.5 bits (114), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 44/168 (26%), Positives = 74/168 (44%), Gaps = 16/168 (9%)
Query: 64 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 123
++G G GK+ + V + I M+ EL GE AKL+R ++ + ++ +
Sbjct: 188 LYGPPGTGKTMLAKAVANQTNATFIKMAGSELVHKFIGEGAKLVRDLFK----VAREHEP 243
Query: 124 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 183
+ I+++DA A + T T + V T+M + L M E+ + II
Sbjct: 244 AVIFIDEIDAIAAKR--TESKTSGDAEVQRTMMQL--------LSEMDGFEDRGEIRIIA 293
Query: 184 TGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCKGIFRNDNVADD 229
N F L ++R GR ++ P +E R + + R NVADD
Sbjct: 294 ATNRFDMLDRAILRPGRFDRLIEVPKPNQEGREIIFEIHTRGMNVADD 341
>gi|434393705|ref|YP_007128652.1| AAA ATPase central domain protein [Gloeocapsa sp. PCC 7428]
gi|428265546|gb|AFZ31492.1| AAA ATPase central domain protein [Gloeocapsa sp. PCC 7428]
Length = 504
Score = 48.5 bits (114), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 49/205 (23%), Positives = 85/205 (41%), Gaps = 38/205 (18%)
Query: 53 LPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYR 112
LP+ + L++GI +G GKS + + + + + G L G GE R R
Sbjct: 256 LPHPRGLLLVGI---QGTGKSLTAKAIAHHWHLPLLRLDVGRLFGGLVGES----ESRTR 308
Query: 113 EAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYN 172
+ + + C L I+++D +GG +++ + +A
Sbjct: 309 QMIQVAEALSPCILWIDEIDKAFAGIGGKGDAGTTSRVFGTFITWLA------------- 355
Query: 173 KEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCKGIF-------RN 223
E+ V ++ T ND +L ++R GR ++ ++ PT+E+R K IF R
Sbjct: 356 -EKTSPVFVVATANDIQSLPPEMLRKGRFDEIFFVGLPTQEER----KAIFTVHLSRLRP 410
Query: 224 DNVADDDIVKLVDTFPGQSIDFFGA 248
N+ DI +L P DF GA
Sbjct: 411 HNIKTYDIERLAYETP----DFSGA 431
>gi|448359787|ref|ZP_21548436.1| proteasome-activating nucleotidase [Natrialba chahannaoensis JCM
10990]
gi|445641854|gb|ELY94926.1| proteasome-activating nucleotidase [Natrialba chahannaoensis JCM
10990]
Length = 405
Score = 48.5 bits (114), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 44/168 (26%), Positives = 74/168 (44%), Gaps = 16/168 (9%)
Query: 64 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 123
++G G GK+ + V + I M+ EL GE AKL+R ++ + ++ +
Sbjct: 188 LYGPPGTGKTMLAKAVANQTNATFIKMAGSELVHKFIGEGAKLVRDLFK----VAREHEP 243
Query: 124 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 183
+ I+++DA A + T T + V T+M + L M E+ + II
Sbjct: 244 AVIFIDEIDAIAAKR--TESKTSGDAEVQRTMMQL--------LSEMDGFEDRGEIRIIA 293
Query: 184 TGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCKGIFRNDNVADD 229
N F L ++R GR ++ P +E R + + R NVADD
Sbjct: 294 ATNRFDMLDRAILRPGRFDRLIEVPKPNQEGREIIFEIHTRGMNVADD 341
>gi|115444877|ref|NP_001046218.1| Os02g0199900 [Oryza sativa Japonica Group]
gi|11094192|dbj|BAB17625.1| 26S proteasome regulatory particle triple-A ATPase subunit4 [Oryza
sativa Japonica Group]
gi|46390379|dbj|BAD15843.1| 26S proteasome regulatory particle triple-A ATPase subunit4 [Oryza
sativa Japonica Group]
gi|49388371|dbj|BAD25481.1| 26S proteasome regulatory particle triple-A ATPase subunit4 [Oryza
sativa Japonica Group]
gi|113535749|dbj|BAF08132.1| Os02g0199900 [Oryza sativa Japonica Group]
gi|125581193|gb|EAZ22124.1| hypothetical protein OsJ_05786 [Oryza sativa Japonica Group]
Length = 400
Score = 48.5 bits (114), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 48/194 (24%), Positives = 92/194 (47%), Gaps = 20/194 (10%)
Query: 56 IKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 115
IK P + ++G G GK+ + + + N + + + + GE A+LIR+ + A
Sbjct: 171 IKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKIVSSAIIDKYIGESARLIREMFGYAR 230
Query: 116 DIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEE 175
D + C + ++++DA GR ++ T ++ + TLM + + QL G +E
Sbjct: 231 D----HQPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QLDGF---DE 276
Query: 176 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCK----GIFRNDNVADD 229
+V +I+ N L L+R GR+++ P + R+ V K GI ++ + +
Sbjct: 277 LGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQARMEVLKIHAAGIAKHGEIDYE 336
Query: 230 DIVKLVDTFPGQSI 243
+VKL + F G +
Sbjct: 337 AVVKLAEGFNGADL 350
>gi|389610171|dbj|BAM18697.1| 26S protease regulatory subunit rpt4 [Papilio xuthus]
Length = 396
Score = 48.5 bits (114), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 46/186 (24%), Positives = 89/186 (47%), Gaps = 20/186 (10%)
Query: 64 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 123
++G G GK+ V +++ N + + + + GE A+LIR+ + A D +
Sbjct: 179 LYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIREMFNYARD----HQP 234
Query: 124 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 183
C + ++++DA GR ++ T ++ + TLM + + Q+ G + +V II+
Sbjct: 235 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGF---DSLGQVKIIM 284
Query: 184 TGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCK----GIFRNDNVADDDIVKLVDT 237
N TL L+R GR+++ P + R+ + K I ++ + + +VKL DT
Sbjct: 285 ATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLEILKIHAAPIAKHGEMDYEAVVKLSDT 344
Query: 238 FPGQSI 243
F G +
Sbjct: 345 FNGADL 350
>gi|448613304|ref|ZP_21663184.1| proteasome-activating nucleotidase [Haloferax mucosum ATCC
BAA-1512]
gi|445740201|gb|ELZ91707.1| proteasome-activating nucleotidase [Haloferax mucosum ATCC
BAA-1512]
Length = 405
Score = 48.5 bits (114), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 48/176 (27%), Positives = 80/176 (45%), Gaps = 17/176 (9%)
Query: 64 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 123
++G G GK+ + V + + I M+ EL GE AKL+R + ++ ++ +
Sbjct: 188 LYGPPGTGKTMLAKAVANQTNASFIKMAGSELVHKFIGEGAKLVRDLF----EVARENEP 243
Query: 124 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 183
+ I+++DA A + T T + V T+M + L M +E + II
Sbjct: 244 AVIFIDEIDAIASKR--TDSKTSGDAEVQRTMMQL--------LAEMDGFDERGNIRIIA 293
Query: 184 TGNDFSTLYAPLIRDGRMEKFYWAPT-RED-RIGVCKGIFRNDNVADD-DIVKLVD 236
N F L ++R GR ++ P ED R + K R NV+DD D V+L +
Sbjct: 294 ATNRFDMLDPAILRPGRFDRLIEVPKPNEDGREIIFKIHTRKMNVSDDVDFVELAE 349
>gi|448666749|ref|ZP_21685394.1| cell division control protein 48/AAA family ATPase [Haloarcula
amylolytica JCM 13557]
gi|445771880|gb|EMA22936.1| cell division control protein 48/AAA family ATPase [Haloarcula
amylolytica JCM 13557]
Length = 757
Score = 48.5 bits (114), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 60/248 (24%), Positives = 106/248 (42%), Gaps = 32/248 (12%)
Query: 64 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 123
++G G GK+ + V + N I + EL + GE K +R+ + +A ++
Sbjct: 505 MYGPPGTGKTLLAKAVANEAQSNFISVKGPELLNKFVGESEKGVREVFSKA----RENAP 560
Query: 124 CCLMINDLDAGAG-RMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPII 182
+ +++D+ AG R GGTT V ++V+ L +L G+ + E V ++
Sbjct: 561 TVVFFDEIDSIAGERGGGTTDSGVGERVVSQLL---------TELDGIEDME---NVVVV 608
Query: 183 VTGNDFSTLYAPLIRDGRMEKFYWAPT--REDRIGVCKGIFRNDNVAD----DDIVKLVD 236
T N + L+R GR+++ P E R + + R+ +AD DD+ D
Sbjct: 609 ATTNRPDLIDDALLRPGRLDRHVHVPVPDEEARRAIFQVHTRDKPLADGVDLDDLASRTD 668
Query: 237 TFPGQSIDFFGALRARVYDDEVRKWISGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLE 296
+ G I+ A+ R++I+ V IG S+ N + FE L E
Sbjct: 669 GYVGADIE---AVAREASMAATREFINSVDPEDIGDSVSNVRVTMDHFEH------ALEE 719
Query: 297 YGNMIVQE 304
G + +E
Sbjct: 720 VGPSVTEE 727
>gi|358058571|dbj|GAA95534.1| hypothetical protein E5Q_02189 [Mixia osmundae IAM 14324]
Length = 432
Score = 48.5 bits (114), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 43/186 (23%), Positives = 90/186 (48%), Gaps = 20/186 (10%)
Query: 64 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 123
++G G GK+ + V + MG+N + + + + GE ++L+R+ + A K+ +
Sbjct: 214 LYGPPGTGKTLLAKAVASTMGVNFLKVVSSAIVDKYIGESSRLVREMFAYA----KEHEP 269
Query: 124 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 183
C + ++++DA GR ++ T ++ + TLM + + Q+ G + R +I+
Sbjct: 270 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGF---DSLGRTKVIM 319
Query: 184 TGNDFSTLYAPLIRDGRMEKFYWAP-----TREDRIGV-CKGIFRNDNVADDDIVKLVDT 237
N TL L+R GR+++ P R + I + + + ++ + D +VKL +
Sbjct: 320 ATNRPDTLDPALLRPGRLDRKIEIPLPNEIARTEIIKIHAQNVQKSGEIDYDPVVKLSEG 379
Query: 238 FPGQSI 243
F G +
Sbjct: 380 FNGADL 385
>gi|448355430|ref|ZP_21544182.1| proteasome-activating nucleotidase [Natrialba hulunbeirensis JCM
10989]
gi|445635583|gb|ELY88751.1| proteasome-activating nucleotidase [Natrialba hulunbeirensis JCM
10989]
Length = 405
Score = 48.5 bits (114), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 44/168 (26%), Positives = 74/168 (44%), Gaps = 16/168 (9%)
Query: 64 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 123
++G G GK+ + V + I M+ EL GE AKL+R ++ + ++ +
Sbjct: 188 LYGPPGTGKTMLAKAVANQTNATFIKMAGSELVHKFIGEGAKLVRDLFK----VAREHEP 243
Query: 124 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 183
+ I+++DA A + T T + V T+M + L M E+ + II
Sbjct: 244 AVIFIDEIDAIAAKR--TESKTSGDAEVQRTMMQL--------LSEMDGFEDRGEIRIIA 293
Query: 184 TGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCKGIFRNDNVADD 229
N F L ++R GR ++ P +E R + + R NVADD
Sbjct: 294 ATNRFDMLDRAILRPGRFDRLIEVPKPNQEGREIIFEIHTRGMNVADD 341
>gi|21226549|ref|NP_632471.1| cell division control protein [Methanosarcina mazei Go1]
gi|452209052|ref|YP_007489166.1| Cell division protein FtsH [Methanosarcina mazei Tuc01]
gi|20904821|gb|AAM30143.1| Cell division control protein [Methanosarcina mazei Go1]
gi|452098954|gb|AGF95894.1| Cell division protein FtsH [Methanosarcina mazei Tuc01]
Length = 792
Score = 48.5 bits (114), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 46/188 (24%), Positives = 85/188 (45%), Gaps = 18/188 (9%)
Query: 56 IKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 115
IK P + ++G G GK+ + V + N I + E+ S GE K IR+ +++A
Sbjct: 546 IKAPKGILLYGPPGTGKTLIAQAVAKESNANFISVKGPEMFSKWLGESEKAIRETFKKAR 605
Query: 116 DIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEE 175
+ C + +++D+ AG G + + ++ V L+ D ++
Sbjct: 606 QV----SPCVVFFDEIDSIAGMQGMESTDSRTSERVLNQLLTEMDGLETLK--------- 652
Query: 176 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCKGIFRNDNVADD-DIV 232
V II N + L ++R GR ++ + AP R+ R+ + K +N +A+D ++
Sbjct: 653 --DVVIIAATNRPNLLDPAILRPGRFDRLVYVGAPDRKGRLRIFKIHTQNTPLAEDVNLE 710
Query: 233 KLVDTFPG 240
L DT G
Sbjct: 711 NLADTTEG 718
>gi|218190265|gb|EEC72692.1| hypothetical protein OsI_06267 [Oryza sativa Indica Group]
Length = 400
Score = 48.5 bits (114), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 48/194 (24%), Positives = 92/194 (47%), Gaps = 20/194 (10%)
Query: 56 IKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 115
IK P + ++G G GK+ + + + N + + + + GE A+LIR+ + A
Sbjct: 171 IKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKIVSSAIIDKYIGESARLIREMFGYAR 230
Query: 116 DIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEE 175
D + C + ++++DA GR ++ T ++ + TLM + + QL G +E
Sbjct: 231 D----HQPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QLDGF---DE 276
Query: 176 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCK----GIFRNDNVADD 229
+V +I+ N L L+R GR+++ P + R+ V K GI ++ + +
Sbjct: 277 LGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQARMEVLKIHAAGIAKHGEIDYE 336
Query: 230 DIVKLVDTFPGQSI 243
+VKL + F G +
Sbjct: 337 AVVKLAEGFNGADL 350
>gi|169806672|ref|XP_001828080.1| 19S-PA700 proteasome regulatory particle subunit Rpt4p-S10b
[Enterocytozoon bieneusi H348]
gi|161779208|gb|EDQ31232.1| 19S-PA700 proteasome regulatory particle subunit Rpt4p-S10b
[Enterocytozoon bieneusi H348]
Length = 388
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 55/233 (23%), Positives = 106/233 (45%), Gaps = 22/233 (9%)
Query: 16 ISQGLRTYNLD-NTIDGLYIAPAFMDKLVVHITKN--FMSLPNIKVPLILGIWGGKGQGK 72
+++ +TY LD ++I GL + +++ KN I+ P + ++G G GK
Sbjct: 121 MTEATKTYGLDFSSIGGLEDQIREIREVIELPIKNPEIFKRIGIQPPKGVLLYGPPGTGK 180
Query: 73 SFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLD 132
+ ++V + M + I + A L GE AK++R+ + A + C + ++++D
Sbjct: 181 TLLAKIVASTMDVTFIKVVASSLIEKYIGESAKMVREMFAYA----RLKAPCIIFLDEID 236
Query: 133 AGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLY 192
A G T + +++ V TLM + + QL G + + V +I+ N L
Sbjct: 237 AIGG--ARTNESNSSDREVQRTLMELLN-----QLDGFSDLDG---VKVIMATNRPDILD 286
Query: 193 APLIRDGRMEKFYWAPT-----REDRIGVCKGIFRNDNVADDDIVKLVDTFPG 240
+ L+R GR+++ P R++ + + D + D IVK+ F G
Sbjct: 287 SALLRPGRLDRKIEIPLPNEHGRKEILKIHSKNMNQDQIDLDTIVKMSSGFNG 339
>gi|375083130|ref|ZP_09730162.1| CDC48/VCP like protein, AAA superfamily, partial [Thermococcus
litoralis DSM 5473]
gi|374742216|gb|EHR78622.1| CDC48/VCP like protein, AAA superfamily, partial [Thermococcus
litoralis DSM 5473]
Length = 535
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 53/201 (26%), Positives = 90/201 (44%), Gaps = 24/201 (11%)
Query: 50 FMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQ 109
FM++ I P + ++G G GK+ + V + N I + E+ S GE K IR+
Sbjct: 269 FMAM-GITPPKGILLYGPPGTGKTLLAKAVATESEANFIGIRGPEVLSKWVGESEKNIRE 327
Query: 110 RYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPG 169
+R+A ++ + I+++DA A R GT V ++++N L
Sbjct: 328 IFRKA----RQAAPTVVFIDEIDAIAPRR-GTDVNRVTDRLINQLLTE------------ 370
Query: 170 MYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCKGIFRNDNVA 227
M EEN V +I N L L+R GR ++ AP + R+ + K RN +A
Sbjct: 371 MDGIEENSGVVVIAATNRPDILDPALLRPGRFDRLILVPAPDEKARLEIFKVHTRNVPLA 430
Query: 228 DD----DIVKLVDTFPGQSID 244
+D ++ K + + G I+
Sbjct: 431 EDVSLEELAKRTEGYTGADIE 451
>gi|378755356|gb|EHY65383.1| 26S protease regulatory subunit S10B [Nematocida sp. 1 ERTm2]
Length = 389
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 45/186 (24%), Positives = 90/186 (48%), Gaps = 20/186 (10%)
Query: 64 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 123
++G G GK+ V A + N + + + + GE +++IR+ + A K+ +
Sbjct: 172 LYGPPGTGKTLLARAVAATLDSNFLKVVSSAIIEKYIGESSRMIREMFTYA----KENQP 227
Query: 124 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 183
C + ++++DA G+ +++ T +++ V TLM + + Q+ G EE RV +I+
Sbjct: 228 CVIFLDEIDAIGGKR--SSESTSSDREVQRTLMELLN-----QMDGF---EELGRVKVIM 277
Query: 184 TGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCK----GIFRNDNVADDDIVKLVDT 237
N L L+R GR+++ PT + R+ + K + + ++ + IVK+
Sbjct: 278 ATNRPDILDPALLRPGRLDRKIEIPLPTSQGRLEILKIHSAKMEKKGDIDYNTIVKMSHG 337
Query: 238 FPGQSI 243
F G I
Sbjct: 338 FNGADI 343
>gi|406605633|emb|CCH42949.1| 26S protease subunit [Wickerhamomyces ciferrii]
Length = 418
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 50/194 (25%), Positives = 87/194 (44%), Gaps = 20/194 (10%)
Query: 56 IKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 115
IK P + ++G G GK+ + V A +G N I A + GE A+LIR+ + A
Sbjct: 193 IKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASAIVDKYIGESARLIREMFSYA- 251
Query: 116 DIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEE 175
K+ + C + ++++DA GR ++ T ++ + TLM + + G
Sbjct: 252 ---KEHEPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLNQMDGFDYLG------ 300
Query: 176 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRED--RIGVCK----GIFRNDNVADD 229
+ +I+ N TL L+R GR+++ P + R+ V K I + +
Sbjct: 301 --QTKVIMATNRPDTLDPALLRAGRLDRKIEIPLPNEAGRLEVFKIHTEKISKQGEFDFE 358
Query: 230 DIVKLVDTFPGQSI 243
+VK+ D F G I
Sbjct: 359 AVVKMSDGFNGADI 372
>gi|448305307|ref|ZP_21495239.1| proteasome-activating nucleotidase [Natronorubrum sulfidifaciens
JCM 14089]
gi|445589154|gb|ELY43390.1| proteasome-activating nucleotidase [Natronorubrum sulfidifaciens
JCM 14089]
Length = 405
Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 44/168 (26%), Positives = 74/168 (44%), Gaps = 16/168 (9%)
Query: 64 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 123
++G G GK+ + V + I M+ EL GE AKL+R ++ + ++ +
Sbjct: 188 LYGPPGTGKTMLAKAVANQTDATFIKMAGSELVHKFIGEGAKLVRDLFK----VAREHEP 243
Query: 124 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 183
+ I+++DA A + T T + V T+M + L M EE + II
Sbjct: 244 AVIFIDEIDAIAAKR--TESKTSGDAEVQRTMMQL--------LSEMDGFEERGEIRIIA 293
Query: 184 TGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCKGIFRNDNVADD 229
N F L ++R GR ++ P ++ R + + R NVADD
Sbjct: 294 ATNRFDMLDRAILRPGRFDRLIEVPKPNQDGREIIFEIHTRGMNVADD 341
>gi|387592229|gb|EIJ87253.1| ATPase [Nematocida parisii ERTm3]
gi|387597428|gb|EIJ95048.1| ATPase [Nematocida parisii ERTm1]
Length = 389
Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 45/186 (24%), Positives = 90/186 (48%), Gaps = 20/186 (10%)
Query: 64 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 123
++G G GK+ V A + N + + + + GE +++IR+ + A K+ +
Sbjct: 172 LYGPPGTGKTLLARAVAATLDSNFLKVVSSAIIEKYIGESSRMIREMFTYA----KENQP 227
Query: 124 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 183
C + ++++DA G+ +++ T +++ V TLM + + Q+ G EE RV +I+
Sbjct: 228 CVIFLDEIDAIGGKR--SSESTSSDREVQRTLMELLN-----QMDGF---EELGRVKVIM 277
Query: 184 TGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCK----GIFRNDNVADDDIVKLVDT 237
N L L+R GR+++ PT + R+ + K + + ++ + IVK+
Sbjct: 278 ATNRPDILDPALLRPGRLDRKIEIPLPTSQGRLEILKIHSQKMEKKGDIDYNTIVKMSHG 337
Query: 238 FPGQSI 243
F G I
Sbjct: 338 FNGADI 343
>gi|357139615|ref|XP_003571376.1| PREDICTED: 26S protease regulatory subunit S10B homolog B-like
[Brachypodium distachyon]
Length = 400
Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 48/194 (24%), Positives = 91/194 (46%), Gaps = 20/194 (10%)
Query: 56 IKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 115
IK P + ++G G GK+ + + + N + + + + GE A+LIR+ + A
Sbjct: 171 IKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKIVSSAIIDKYIGESARLIREMFGYAR 230
Query: 116 DIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEE 175
D + C + ++++DA GR ++ T ++ + TLM + + QL G +E
Sbjct: 231 D----HQPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QLDGF---DE 276
Query: 176 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCK----GIFRNDNVADD 229
+V +I+ N L L+R GR+++ P + R V K GI ++ + +
Sbjct: 277 LGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRTEVLKIHAAGIAKHGEIDYE 336
Query: 230 DIVKLVDTFPGQSI 243
+VKL + F G +
Sbjct: 337 AVVKLAEGFNGADL 350
>gi|268323248|emb|CBH36836.1| conserved hypothetical protein, AAA ATPase family and CDC48 family
[uncultured archaeon]
Length = 739
Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 49/201 (24%), Positives = 88/201 (43%), Gaps = 22/201 (10%)
Query: 49 NFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIR 108
+ SL N K P + ++G G GK+ + V + N I + EL S GE K +R
Sbjct: 484 DVFSLLNTKPPKGVLLFGPPGTGKTMLVKAVANESDANFISIKGPELLSKWVGESEKAVR 543
Query: 109 QRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLP 168
+ +R+A K+ C + ++++D+ A V ++V+ L
Sbjct: 544 EIFRKA----KQSAPCIIFLDEIDSIAPIRSAGLDSHVTERVVSQILTE----------- 588
Query: 169 GMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCK----GIFR 222
M EE V II N + L+R GR+++ + +PT+E R + K G
Sbjct: 589 -MDGLEELKDVMIIAATNRPDIIDPALLRPGRLDRLIYIQSPTKEAREAIFKVHLAGKPL 647
Query: 223 NDNVADDDIVKLVDTFPGQSI 243
+V+ +++ K+ + + G I
Sbjct: 648 GADVSIEELAKMTEGYVGADI 668
>gi|367000972|ref|XP_003685221.1| hypothetical protein TPHA_0D01470 [Tetrapisispora phaffii CBS 4417]
gi|357523519|emb|CCE62787.1| hypothetical protein TPHA_0D01470 [Tetrapisispora phaffii CBS 4417]
Length = 455
Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 42/153 (27%), Positives = 72/153 (47%), Gaps = 14/153 (9%)
Query: 56 IKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 115
IK P + ++G G GK+ + V A +G N I A + GE A++IR+ + A
Sbjct: 230 IKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVDKYIGESARIIREMFAYAK 289
Query: 116 DIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEE 175
D + C + ++++DA GR ++ T ++ + TLM + Q+ G N +
Sbjct: 290 D----HEPCIIFMDEVDAIGGRR--FSEGTSADREIQRTLMEL-----LTQMDGFENLGQ 338
Query: 176 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAP 208
II+ N TL L+R GR+++ P
Sbjct: 339 ---TKIIMATNRPDTLDPALLRPGRLDRKIEIP 368
>gi|221486668|gb|EEE24929.1| 26S proteasome regulatory ATPase subunit, putative [Toxoplasma
gondii GT1]
gi|221508425|gb|EEE34012.1| 26S proteasome regulatory ATPase subunit, putative [Toxoplasma
gondii VEG]
Length = 398
Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 50/194 (25%), Positives = 89/194 (45%), Gaps = 20/194 (10%)
Query: 56 IKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 115
IK P + ++G G GK+ + + M N + + A + GE A++IR+ + A
Sbjct: 174 IKTPKGVLLYGPPGTGKTLLARAMASNMNCNFMKVVASAIVDKYIGESARVIREMFAYAR 233
Query: 116 DIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEE 175
D + C + ++++DA GR +Q T ++ + TLM + + QL G +E
Sbjct: 234 D----HEPCIIFMDEIDAIGGRR--FSQGTSADREIQRTLMELLN-----QLDGF---DE 279
Query: 176 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRED--RIGVCK----GIFRNDNVADD 229
V II+ N L L+R GR+++ P + R+ + K I + ++ +
Sbjct: 280 LGAVKIIMATNRPDVLDPALMRPGRLDRKIEIPLPNETARVDILKIHSSKIAKQGDIDYE 339
Query: 230 DIVKLVDTFPGQSI 243
I KL D F G +
Sbjct: 340 AICKLCDGFNGADL 353
>gi|448290078|ref|ZP_21481234.1| proteasome-activating nucleotidase [Haloferax volcanii DS2]
gi|445580470|gb|ELY34849.1| proteasome-activating nucleotidase [Haloferax volcanii DS2]
Length = 436
Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 47/184 (25%), Positives = 80/184 (43%), Gaps = 16/184 (8%)
Query: 48 KNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLI 107
K ++ I P + ++G G GK+ + V + + I M+ EL GE A+L+
Sbjct: 199 KTMLAXVGIDPPSGVLLYGPPGTGKTMLAKAVANETNASFIKMAGSELVQKFIGEGARLV 258
Query: 108 RQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQL 167
R ++ AA + + + I+++DA A + T T + V T+M + L
Sbjct: 259 RDLFKLAA----EREPVVVFIDEIDAVASKR--TDSKTSGDAEVQRTMMQL--------L 304
Query: 168 PGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCKGIFRNDN 225
M ++ + II N F L ++R GR ++ P E R + R+ N
Sbjct: 305 SEMDGFDDRGDIRIIAATNRFDMLDEAILRPGRFDRLIEVPKPAVEGRRHILDIHTRDMN 364
Query: 226 VADD 229
VADD
Sbjct: 365 VADD 368
>gi|313125329|ref|YP_004035593.1| proteasome-activating nucleotidase [Halogeometricum borinquense DSM
11551]
gi|448287075|ref|ZP_21478291.1| proteasome-activating nucleotidase [Halogeometricum borinquense DSM
11551]
gi|312291694|gb|ADQ66154.1| Proteasome-activating nucleotidase [Halogeometricum borinquense DSM
11551]
gi|445572821|gb|ELY27351.1| proteasome-activating nucleotidase [Halogeometricum borinquense DSM
11551]
Length = 409
Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 49/183 (26%), Positives = 81/183 (44%), Gaps = 19/183 (10%)
Query: 64 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 123
+ G G GK+ + V + I M+ EL GE A+L+R + AAD +
Sbjct: 190 LHGPPGTGKTMLAKAVANETDATFIKMAGSELVRKFIGEGARLVRDLFELAAD----REP 245
Query: 124 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 183
+ I+++DA A + T T + V T+M + ++ G ++ E + I+
Sbjct: 246 AVIFIDEIDAVASKR--TDSKTSGDAEVQRTMMQL-----LSEMDGFDDRGE---IRIMA 295
Query: 184 TGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGI---FRNDNVADD-DIVKLVDTFP 239
N F L ++R GR ++ P D G+ K + R N+ADD D +L +
Sbjct: 296 ATNRFDMLDEAILRPGRFDRLIEVPN-PDPEGIVKILEIHTREMNIADDVDFEELAEELD 354
Query: 240 GQS 242
GQS
Sbjct: 355 GQS 357
>gi|237834291|ref|XP_002366443.1| 26S proteasome regulatory ATPase subunit, putative [Toxoplasma
gondii ME49]
gi|211964107|gb|EEA99302.1| 26S proteasome regulatory ATPase subunit, putative [Toxoplasma
gondii ME49]
Length = 398
Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 50/194 (25%), Positives = 89/194 (45%), Gaps = 20/194 (10%)
Query: 56 IKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 115
IK P + ++G G GK+ + + M N + + A + GE A++IR+ + A
Sbjct: 174 IKTPKGVLLYGPPGTGKTLLARAMASNMNCNFMKVVASAIVDKYIGESARVIREMFAYAR 233
Query: 116 DIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEE 175
D + C + ++++DA GR +Q T ++ + TLM + + QL G +E
Sbjct: 234 D----HEPCIIFMDEIDAIGGRR--FSQGTSADREIQRTLMELLN-----QLDGF---DE 279
Query: 176 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRED--RIGVCK----GIFRNDNVADD 229
V II+ N L L+R GR+++ P + R+ + K I + ++ +
Sbjct: 280 LGAVKIIMATNRPDVLDPALMRPGRLDRKIEIPLPNETARVDILKIHSSKIAKQGDIDYE 339
Query: 230 DIVKLVDTFPGQSI 243
I KL D F G +
Sbjct: 340 AICKLCDGFNGADL 353
>gi|448444786|ref|ZP_21590012.1| proteasome-activating nucleotidase [Halorubrum saccharovorum DSM
1137]
gi|445685754|gb|ELZ38100.1| proteasome-activating nucleotidase [Halorubrum saccharovorum DSM
1137]
Length = 405
Score = 48.1 bits (113), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 48/182 (26%), Positives = 78/182 (42%), Gaps = 17/182 (9%)
Query: 64 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 123
++G G GK+ + V + I M+ EL GE AKL+R + ++ ++ +
Sbjct: 188 LYGPPGTGKTMLAKAVANETDATFIKMAGSELVHKFIGEGAKLVRDLF----EVARENQP 243
Query: 124 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 183
L I+++DA A + T T + V T+M + L M +E V II
Sbjct: 244 AVLFIDEIDAIASKR--TDSKTSGDAEVQRTMMQL--------LSEMDGFDERGEVRIIA 293
Query: 184 TGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCKGIFRNDNVADD-DIVKLVDTFPG 240
N F L ++R GR ++ P E R + + R N+A D D +L + P
Sbjct: 294 ATNRFDMLDPAILRPGRFDRLIEVPKPNTEGREIIFQIHTRKMNLASDIDFTELAEMTPD 353
Query: 241 QS 242
S
Sbjct: 354 AS 355
>gi|308161269|gb|EFO63723.1| 26S protease regulatory subunit 7 [Giardia lamblia P15]
Length = 401
Score = 48.1 bits (113), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 53/194 (27%), Positives = 90/194 (46%), Gaps = 19/194 (9%)
Query: 56 IKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 115
IK P + ++G G GKS C+ + +GI+ I +L GE A+L+R + A
Sbjct: 169 IKPPKSILLYGAPGTGKSLICKCLANSLGISYIKCVGSQLIRKYIGESARLVRDLFAYA- 227
Query: 116 DIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEE 175
+ K C LMI+++DA A + + T N++ V+ L+ + ++ G +E
Sbjct: 228 ---RLKKPCLLMIDEVDAIATKR--SDDGTHNDREVDRALLQL-----LTEIDGFTGLDE 277
Query: 176 NPRVPIIVTGNDFSTLYAPLIRDGR----MEKFYWAPT-REDRIGV-CKGIFRNDNVADD 229
+ + I+ N L L+R GR +E PT R + + + KG+ ++V
Sbjct: 278 S--IKIVFCTNRPEALDPALMRPGRCDVKIEIKLPDPTGRYEILKIHSKGLSLGEDVDFA 335
Query: 230 DIVKLVDTFPGQSI 243
IVK D F G +
Sbjct: 336 GIVKSTDGFNGADL 349
>gi|50292351|ref|XP_448608.1| hypothetical protein [Candida glabrata CBS 138]
gi|49527920|emb|CAG61571.1| unnamed protein product [Candida glabrata]
Length = 436
Score = 48.1 bits (113), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 51/194 (26%), Positives = 89/194 (45%), Gaps = 20/194 (10%)
Query: 56 IKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 115
IK P + ++G G GK+ + V A +G N I A + GE A++IR+ + A
Sbjct: 211 IKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVDKYIGESARIIREMFAYA- 269
Query: 116 DIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEE 175
K+ + C + ++++DA GR ++ T ++ + TLM + Q+ G N +
Sbjct: 270 ---KEHEPCIIFMDEVDAIGGRR--FSEGTSADREIQRTLMEL-----LTQMDGFDNLGQ 319
Query: 176 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRED--RIGVCK----GIFRNDNVADD 229
II+ N TL L+R GR+++ P + R+ + K + ++ D
Sbjct: 320 ---TKIIMATNRPDTLDPALLRPGRLDRKIEIPLPNEAGRLEIFKIHTSKVKKSGEFDFD 376
Query: 230 DIVKLVDTFPGQSI 243
VK+ D F G I
Sbjct: 377 AAVKMSDGFNGADI 390
>gi|448301595|ref|ZP_21491586.1| proteasome-activating nucleotidase [Natronorubrum tibetense GA33]
gi|445583511|gb|ELY37841.1| proteasome-activating nucleotidase [Natronorubrum tibetense GA33]
Length = 405
Score = 48.1 bits (113), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 44/168 (26%), Positives = 73/168 (43%), Gaps = 16/168 (9%)
Query: 64 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 123
++G G GK+ + V + I M+ EL GE AKL+R ++ + ++ +
Sbjct: 188 LYGPPGTGKTMLAKAVANQTDATFIKMAGSELVHKFIGEGAKLVRDLFK----VAREHEP 243
Query: 124 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 183
+ I+++DA A + T T + V T+M + L M E+ + II
Sbjct: 244 AVIFIDEIDAIAAKR--TESKTSGDAEVQRTMMQL--------LSEMDGFEDRGEIRIIA 293
Query: 184 TGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCKGIFRNDNVADD 229
N F L ++R GR ++ P E R + + R NVADD
Sbjct: 294 ATNRFDMLDRAILRPGRFDRLIEVPKPNEEGREIIFQIHTRGMNVADD 341
>gi|429964182|gb|ELA46180.1| 26S proteasome subunit P45 family protein [Vavraia culicis
'floridensis']
Length = 396
Score = 48.1 bits (113), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 45/186 (24%), Positives = 89/186 (47%), Gaps = 20/186 (10%)
Query: 64 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 123
++G G GK+ + A M +N + + A L GE +++IR+ ++ A ++
Sbjct: 179 LYGPPGTGKTLLARAIAATMDVNFLKVVASSLIEKYIGESSRMIREMFQYA----RERTP 234
Query: 124 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 183
C + ++++DA G+ +T+ + +++ V TLM + + QL G + + +V +I+
Sbjct: 235 CIIFLDEIDAIGGKR--STESSSSDREVQRTLMELLN-----QLDGFTSLD---KVKVIM 284
Query: 184 TGNDFSTLYAPLIRDGRMEKFYWAPTRED--RIGVCKGIFRN----DNVADDDIVKLVDT 237
N L L+R GR+++ P D R + K R+ + + D +VKL
Sbjct: 285 ATNRPDILDPALLRPGRLDRKIEIPLPNDSGRKEILKIYIRDMTCSEKIDLDMLVKLSVG 344
Query: 238 FPGQSI 243
F G +
Sbjct: 345 FNGADL 350
>gi|448122272|ref|XP_004204409.1| Piso0_000256 [Millerozyma farinosa CBS 7064]
gi|358349948|emb|CCE73227.1| Piso0_000256 [Millerozyma farinosa CBS 7064]
Length = 835
Score = 48.1 bits (113), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 50/216 (23%), Positives = 92/216 (42%), Gaps = 33/216 (15%)
Query: 64 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 123
++G G GK+ + ++ + +SA + SG +GE K +R+ + EA +
Sbjct: 229 LYGPSGCGKTTIANALAGELQVPLFNISAPSIVSGMSGESEKKLRELFEEARGLAP---- 284
Query: 124 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 183
C + ++++DA + G Q + ++V A L+ + D T + G P+IV
Sbjct: 285 CIIFMDEIDAITPKRDGGAQREMERRIV-AQLLTLMDELTLEKTDGK---------PVIV 334
Query: 184 TG--NDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCKGIFRNDNVADDD---IVKLVD 236
G N +L + L R GR ++ P E RI + K + + D D L
Sbjct: 335 IGATNRPDSLDSALRRAGRFDREICLNVPNEEQRISILKAMTEKLKIEDKDNFNYRTLAK 394
Query: 237 TFPGQSIDFFGALRARVYDDEVRKWISGVGVGSIGK 272
PG F GA +++ ++ G+ +I +
Sbjct: 395 MTPG----FVGA--------DLKSLVTAAGIAAIKR 418
>gi|15239140|ref|NP_199115.1| regulatory particle triple-A ATPase 4A [Arabidopsis thaliana]
gi|75337115|sp|Q9SEI3.1|PS10A_ARATH RecName: Full=26S protease regulatory subunit 10B homolog A;
AltName: Full=26S proteasome AAA-ATPase subunit RPT4a;
AltName: Full=26S proteasome subunit 10B homolog A;
AltName: Full=Regulatory particle triple-A ATPase
subunit 4a
gi|6652884|gb|AAF22524.1|AF123393_1 26S proteasome AAA-ATPase subunit RPT4a [Arabidopsis thaliana]
gi|13937183|gb|AAK50085.1|AF372945_1 AT5g43010/MBD2_21 [Arabidopsis thaliana]
gi|9758590|dbj|BAB09203.1| 26S proteasome AAA-ATPase subunit RPT4a [Arabidopsis thaliana]
gi|18700262|gb|AAL77741.1| AT5g43010/MBD2_21 [Arabidopsis thaliana]
gi|332007517|gb|AED94900.1| regulatory particle triple-A ATPase 4A [Arabidopsis thaliana]
Length = 399
Score = 48.1 bits (113), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 47/194 (24%), Positives = 92/194 (47%), Gaps = 20/194 (10%)
Query: 56 IKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 115
IK P + ++G G GK+ + + + N + + + + GE A+LIR+ + A
Sbjct: 170 IKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFNYA- 228
Query: 116 DIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEE 175
++ + C + ++++DA GR ++ T ++ + TLM + + QL G N
Sbjct: 229 ---REHQPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QLDGFDNL-- 276
Query: 176 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCK----GIFRNDNVADD 229
+V +I+ N L L+R GR+++ P + R+ + K GI ++ + +
Sbjct: 277 -GKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMDILKIHAAGIAKHGEIDYE 335
Query: 230 DIVKLVDTFPGQSI 243
IVKL + F G +
Sbjct: 336 AIVKLAEGFNGADL 349
>gi|426359627|ref|XP_004047068.1| PREDICTED: 26S protease regulatory subunit 10B-like [Gorilla
gorilla gorilla]
Length = 389
Score = 48.1 bits (113), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 45/186 (24%), Positives = 87/186 (46%), Gaps = 20/186 (10%)
Query: 64 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 123
++G G GK+ + +++ N + + + + GE A LIR+ + A D +
Sbjct: 172 LYGPPGTGKTLLARAIASQLDCNFLKVVSSSIVDKYIGESAHLIREMFNYARD----HQP 227
Query: 124 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 183
C + ++++DA GR ++ T ++ + TLM + + Q+ G + RV +I+
Sbjct: 228 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGF---DTLHRVKMIM 277
Query: 184 TGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCK----GIFRNDNVADDDIVKLVDT 237
N TL L+R GR+++ P + R+ + K I ++ + + IVKL D
Sbjct: 278 ATNRPDTLDPALLRPGRLDRKIHIDLPNEQARLDILKIHAGPITKHGEIDYEAIVKLSDG 337
Query: 238 FPGQSI 243
F G +
Sbjct: 338 FNGADL 343
>gi|326519767|dbj|BAK00256.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 347
Score = 48.1 bits (113), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 48/194 (24%), Positives = 91/194 (46%), Gaps = 20/194 (10%)
Query: 56 IKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 115
IK P + ++G G GK+ + + + N + + + + GE A+LIR+ + A
Sbjct: 118 IKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKIVSSAIIDKYIGESARLIREMFGYAR 177
Query: 116 DIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEE 175
D + C + ++++DA GR ++ T ++ + TLM + + QL G +E
Sbjct: 178 D----HQPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QLDGF---DE 223
Query: 176 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCK----GIFRNDNVADD 229
+V +I+ N L L+R GR+++ P + R V K GI ++ + +
Sbjct: 224 LGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRTEVLKIHAAGIAKHGEIDYE 283
Query: 230 DIVKLVDTFPGQSI 243
+VKL + F G +
Sbjct: 284 AVVKLAEGFNGADL 297
>gi|390332227|ref|XP_001186944.2| PREDICTED: 26S protease regulatory subunit 10B-like isoform 1
[Strongylocentrotus purpuratus]
gi|390332229|ref|XP_003723449.1| PREDICTED: 26S protease regulatory subunit 10B-like isoform 2
[Strongylocentrotus purpuratus]
Length = 389
Score = 48.1 bits (113), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 44/186 (23%), Positives = 86/186 (46%), Gaps = 20/186 (10%)
Query: 64 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 123
++G G GK+ V +++ N + + + + GE A+LIR+ + A D +
Sbjct: 172 LYGAPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIREMFAYARD----HEP 227
Query: 124 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 183
C + ++++DA GR ++ T ++ + TLM + + G +V II+
Sbjct: 228 CVVFMDEIDAIGGRR--FSEGTSADREIQRTLMELLNQMDGFDTLG--------KVKIIM 277
Query: 184 TGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCK----GIFRNDNVADDDIVKLVDT 237
N TL L+R GR+++ P + R+ + K I ++ ++ + +VKL D
Sbjct: 278 ATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLEILKIHAAPITKHGDIDYEAVVKLSDG 337
Query: 238 FPGQSI 243
F G +
Sbjct: 338 FNGADL 343
>gi|428215715|ref|YP_007088859.1| AAA ATPase [Oscillatoria acuminata PCC 6304]
gi|428004096|gb|AFY84939.1| AAA+ family ATPase [Oscillatoria acuminata PCC 6304]
Length = 544
Score = 48.1 bits (113), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 43/169 (25%), Positives = 76/169 (44%), Gaps = 23/169 (13%)
Query: 53 LPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYR 112
+PN K L++GI +G GKS + + + + + + G L G GE R R
Sbjct: 279 IPNPKGVLLVGI---QGTGKSLSAKTIAHEWRLPLLRLDTGRLFGGIVGES----ESRLR 331
Query: 113 EAADIIKKGKMCCLMINDLDAGAGRM-GGTTQYTVNNQMVNATLMNIADNPTCVQLPGMY 171
+ + + C L I+++D G + GGT + ++ V TL+ +
Sbjct: 332 QMIQLAEAMSPCVLWIDEIDKAFGNISGGTDGDSGTSRRVFGTLIT-------------W 378
Query: 172 NKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCK 218
+E+ V I+ T N+ L A L+R GR ++ ++ PT +R + K
Sbjct: 379 MQEKTAPVFIVATANNVRILPAELLRKGRFDEIFFLNLPTETERREIFK 427
>gi|401409344|ref|XP_003884120.1| hypothetical protein NCLIV_045220 [Neospora caninum Liverpool]
gi|325118538|emb|CBZ54089.1| hypothetical protein NCLIV_045220 [Neospora caninum Liverpool]
Length = 398
Score = 48.1 bits (113), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 50/194 (25%), Positives = 89/194 (45%), Gaps = 20/194 (10%)
Query: 56 IKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 115
IK P + ++G G GK+ + + M N + + A + GE A++IR+ + A
Sbjct: 174 IKTPKGVLLYGPPGTGKTLLARAMASNMNCNFMKVVASAIVDKYIGESARVIREMFAYAR 233
Query: 116 DIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEE 175
D + C + ++++DA GR +Q T ++ + TLM + + QL G +E
Sbjct: 234 D----HEPCIIFMDEIDAIGGRR--FSQGTSADREIQRTLMELLN-----QLDGF---DE 279
Query: 176 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRED--RIGVCK----GIFRNDNVADD 229
V II+ N L L+R GR+++ P + R+ + K I + ++ +
Sbjct: 280 LGAVKIIMATNRPDVLDPALMRPGRLDRKIEIPLPNETARVDILKIHSSKIAKQGDIDYE 339
Query: 230 DIVKLVDTFPGQSI 243
I KL D F G +
Sbjct: 340 AICKLCDGFNGADL 353
>gi|344301833|gb|EGW32138.1| hypothetical protein SPAPADRAFT_71630 [Spathaspora passalidarum
NRRL Y-27907]
Length = 820
Score = 48.1 bits (113), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 49/216 (22%), Positives = 95/216 (43%), Gaps = 33/216 (15%)
Query: 64 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 123
++G G GK+ + ++ + I +SA + SG +GE K +R+ + EA +
Sbjct: 224 LYGPPGCGKTTIANALAGELQVPFINISAPSIVSGMSGESEKKLRELFEEAKTVAP---- 279
Query: 124 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 183
C + ++++DA + G Q + ++V A L+ + D T + G P+IV
Sbjct: 280 CLIFMDEIDAITPKRDGGAQREMERRIV-AQLLTLMDELTLDKTDGK---------PVIV 329
Query: 184 TG--NDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCKGIFRNDNVADDDIVK---LVD 236
G N +L + L R GR ++ P E R + + + +N + D+ K L
Sbjct: 330 IGATNRPDSLDSALRRAGRFDREICLNVPNEEQRASILRAMTKNIKLHDETQFKYKELSK 389
Query: 237 TFPGQSIDFFGALRARVYDDEVRKWISGVGVGSIGK 272
PG + GA +++ ++ G+ +I +
Sbjct: 390 LTPG----YVGA--------DLKSLVTAAGIAAIKR 413
Score = 39.3 bits (90), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 42/171 (24%), Positives = 76/171 (44%), Gaps = 23/171 (13%)
Query: 56 IKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 115
I P + +WG G GK+ + V + N I + EL + GE + +RQ ++ A
Sbjct: 548 ITAPSGVLMWGPPGCGKTLLAKAVANESRANFISVKGPELLNKYVGESERAVRQVFQRAR 607
Query: 116 DIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEE 175
I C + ++LDA R ++ ++++VN L +L G+
Sbjct: 608 ASIP----CIIFFDELDALVPRR-DSSLSESSSRVVNTLL---------TELDGL----- 648
Query: 176 NPRVPIIVTG--NDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCKGIFR 222
N R + V G N + ++R GR++K + P+ E+R+ + K + R
Sbjct: 649 NDRKGVFVIGATNRPDMIDPAMLRPGRLDKTLYIELPSAEERLEILKTLVR 699
>gi|344304021|gb|EGW34270.1| hypothetical protein SPAPADRAFT_59691 [Spathaspora passalidarum
NRRL Y-27907]
Length = 413
Score = 48.1 bits (113), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 42/153 (27%), Positives = 74/153 (48%), Gaps = 14/153 (9%)
Query: 56 IKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 115
IK P + ++G G GK+ + V A +G N I A + GE A+LIR+ + A
Sbjct: 188 IKSPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASAIVDKYIGESARLIREMFSYA- 246
Query: 116 DIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEE 175
K+ + C + ++++DA GR ++ T ++ + TLM + + Q+ G +
Sbjct: 247 ---KEHEPCIIFMDEVDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGF---DS 293
Query: 176 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAP 208
+ II+ N TL L+R GR+++ P
Sbjct: 294 LGQTKIIMATNRPDTLDPALLRAGRLDRKIEIP 326
>gi|448485180|ref|ZP_21606488.1| ATPase AAA [Halorubrum arcis JCM 13916]
gi|445818525|gb|EMA68380.1| ATPase AAA [Halorubrum arcis JCM 13916]
Length = 751
Score = 48.1 bits (113), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 47/185 (25%), Positives = 74/185 (40%), Gaps = 23/185 (12%)
Query: 64 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQ---RYREAADIIKK 120
++G G GK+ + + G+N I ++ EL GE K +R+ R R+AA I
Sbjct: 531 LYGPPGTGKTLLARAIAGESGVNYIQVAGPELLDRYVGESEKAVRELFDRARQAAPAIIF 590
Query: 121 GKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVP 180
+ D DA G G ++ V+ + L +DNP V
Sbjct: 591 FDEIDAVATDRDAAGGDSSGVSERVVSQLLTE--LDRASDNPNLV--------------- 633
Query: 181 IIVTGNDFSTLYAPLIRDGRMEKFYWAPT--REDRIGVCKGIFRNDNVADD-DIVKLVDT 237
++ N L L+R GR+E P RE R + + R + DD D+ ++ D
Sbjct: 634 VLAATNRRDALDPALLRPGRLETHVEVPEPDREARRKILEVHTRGKPLTDDVDLERVADE 693
Query: 238 FPGQS 242
G S
Sbjct: 694 TEGYS 698
>gi|448390199|ref|ZP_21565979.1| proteasome-activating nucleotidase [Haloterrigena salina JCM 13891]
gi|445667527|gb|ELZ20169.1| proteasome-activating nucleotidase [Haloterrigena salina JCM 13891]
Length = 410
Score = 48.1 bits (113), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 49/190 (25%), Positives = 82/190 (43%), Gaps = 17/190 (8%)
Query: 56 IKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 115
I+ P + ++G G GK+ + V + I M+ EL GE ++L+R +
Sbjct: 183 IEPPSGVLLYGPPGTGKTMLAKAVANETDATFIKMAGSELVRKFIGEGSRLVRDLF---- 238
Query: 116 DIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEE 175
++ ++ + + I+++DA A R + T + V T+M + L M E
Sbjct: 239 EMAREREPAIIFIDEIDAIATRRSESK--TSGDAEVQRTMMQL--------LSEMDGFEA 288
Query: 176 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPT--REDRIGVCKGIFRNDNVADD-DIV 232
+ II N F L ++R GR ++ P R+ R + + R NVADD D
Sbjct: 289 RGEIRIIAATNRFDMLDRAILRPGRFDRLIEVPEPDRDGREQILQIHTRGMNVADDVDFA 348
Query: 233 KLVDTFPGQS 242
L D G S
Sbjct: 349 ALADDTEGYS 358
>gi|207340961|gb|EDZ69150.1| YOR259Cp-like protein [Saccharomyces cerevisiae AWRI1631]
Length = 421
Score = 48.1 bits (113), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 42/153 (27%), Positives = 73/153 (47%), Gaps = 14/153 (9%)
Query: 56 IKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 115
IK P + ++G G GK+ + V A +G N I A + GE A++IR+ + A
Sbjct: 212 IKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVDKYIGESARIIREMFAYA- 270
Query: 116 DIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEE 175
K+ + C + ++++DA GR ++ T ++ + TLM + Q+ G N +
Sbjct: 271 ---KEHEPCIIFMDEVDAIGGRR--FSEGTSADREIQRTLMEL-----LTQMDGFDNLGQ 320
Query: 176 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAP 208
II+ N TL L+R GR+++ P
Sbjct: 321 ---TKIIMATNRPDTLDPALLRPGRLDRKVEIP 350
>gi|327302246|ref|XP_003235815.1| AAA family ATPase [Trichophyton rubrum CBS 118892]
gi|326461157|gb|EGD86610.1| AAA family ATPase [Trichophyton rubrum CBS 118892]
Length = 743
Score = 48.1 bits (113), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 48/191 (25%), Positives = 87/191 (45%), Gaps = 16/191 (8%)
Query: 42 LVVHITK-NFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNA 100
+V+ +T+ S N++ P + + G G GK+ A++G+ I +SA + SG +
Sbjct: 193 IVLPMTRPQIFSASNVQPPRGVLLHGPPGCGKTMIANAFAAELGVPFIAISAPSIISGMS 252
Query: 101 GEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIAD 160
GE K +R + EA KK C + ++++DA + + Q + ++V L
Sbjct: 253 GESEKALRDYFEEA----KKVAPCLIFMDEIDAITPKR-ESAQREMEKRIVAQLL----- 302
Query: 161 NPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKF--YWAPTREDRIGVCK 218
TC+ + + P V ++ N +L L R GR +K P+ R + +
Sbjct: 303 --TCMDDLALAKTDGKP-VIVLAATNRPDSLDPALRRGGRFDKEINLTVPSEPVREQILR 359
Query: 219 GIFRNDNVADD 229
+ R N+ADD
Sbjct: 360 ALTREMNLADD 370
Score = 42.7 bits (99), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 47/200 (23%), Positives = 83/200 (41%), Gaps = 19/200 (9%)
Query: 56 IKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 115
I P + +WG G GK+ + V + N I + EL + GE + +RQ + A
Sbjct: 513 ISAPTGVLLWGPPGCGKTLLAKAVANESRANFISIKGPELLNKYVGESERAVRQVFSRAR 572
Query: 116 DIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEE 175
I C + ++LDA R T + ++VN L +L G+ +
Sbjct: 573 SSIP----CVIFFDELDALVPRRDDTMS-EASARVVNTLL---------TELDGLGSSRN 618
Query: 176 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCKGIFRNDNVA-DDDIV 232
+ +I N + ++R GR+E + P R++R V + + R + D++
Sbjct: 619 G--IYVIAATNRPDIIDPAMLRPGRLETLLFVNLPGRDERAEVLRTLIRKLPIEMTDELA 676
Query: 233 KLVDTFPGQSIDFFGALRAR 252
+L + G S G+L R
Sbjct: 677 ELARSCEGFSGADLGSLLRR 696
>gi|387915818|gb|AFK11518.1| proteasome (prosome, macropain) 26S subunit, ATPase, 6
[Callorhinchus milii]
Length = 389
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 44/181 (24%), Positives = 86/181 (47%), Gaps = 20/181 (11%)
Query: 64 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 123
++G G GK+ V +++ N + + + + GE A+LIR+ + A D +
Sbjct: 172 LYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIREMFNYARD----HQP 227
Query: 124 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 183
C + ++++DA GR ++ T ++ + TLM + + Q+ G + RV +I+
Sbjct: 228 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGF---DTLHRVKMIM 277
Query: 184 TGNDFSTLYAPLIRDGRMEK--FYWAPTREDRIGVCK----GIFRNDNVADDDIVKLVDT 237
N TL L+R GR+++ P + R+ + K I ++ + + +VKL D
Sbjct: 278 ATNRPDTLDPALLRPGRLDRKIHIELPNEQARLDILKIHAGPITKHGEIDYEAVVKLSDG 337
Query: 238 F 238
F
Sbjct: 338 F 338
>gi|435846218|ref|YP_007308468.1| Proteasome-activating nucleotidase [Natronococcus occultus SP4]
gi|433672486|gb|AGB36678.1| Proteasome-activating nucleotidase [Natronococcus occultus SP4]
Length = 405
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 46/176 (26%), Positives = 77/176 (43%), Gaps = 16/176 (9%)
Query: 56 IKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 115
I+ P + ++G G GK+ + V + I M+ EL GE AKL+R ++
Sbjct: 180 IEPPSGVLLYGPPGTGKTMLAKAVANQTDATFIKMAGSELVHKFIGEGAKLVRDLFK--- 236
Query: 116 DIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEE 175
+ ++ + + I+++DA A + T T + V T+M + L M E+
Sbjct: 237 -VAREHEPAVIFIDEIDAIAAKR--TESKTSGDAEVQRTMMQL--------LSEMDGFED 285
Query: 176 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCKGIFRNDNVADD 229
+ II N F L ++R GR ++ P +E R + R NVADD
Sbjct: 286 RGEIRIIAATNRFDMLDRAILRPGRFDRLIEVPKPNQEGREIIFDIHTRGMNVADD 341
>gi|284166620|ref|YP_003404899.1| 26S proteasome subunit P45 family [Haloterrigena turkmenica DSM
5511]
gi|284016275|gb|ADB62226.1| 26S proteasome subunit P45 family [Haloterrigena turkmenica DSM
5511]
Length = 410
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 49/190 (25%), Positives = 82/190 (43%), Gaps = 17/190 (8%)
Query: 56 IKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 115
I+ P + ++G G GK+ + V + I M+ EL GE ++L+R +
Sbjct: 183 IEPPSGVLLYGPPGTGKTMLAKAVANETDATFIKMAGSELVRKFIGEGSRLVRDLF---- 238
Query: 116 DIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEE 175
++ ++ + + I+++DA A R + T + V T+M + L M E
Sbjct: 239 EMAREREPAIIFIDEIDAIATRRSESK--TSGDAEVQRTMMQL--------LSEMDGFEA 288
Query: 176 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPT--REDRIGVCKGIFRNDNVADD-DIV 232
+ II N F L ++R GR ++ P R+ R + + R NVADD D
Sbjct: 289 RGEIRIIAATNRFDMLDRAILRPGRFDRLIEVPEPDRDGREQILEIHTRGMNVADDVDFA 348
Query: 233 KLVDTFPGQS 242
L D G S
Sbjct: 349 ALADDTEGYS 358
>gi|328354365|emb|CCA40762.1| 26S protease regulatory subunit S10B [Komagataella pastoris CBS
7435]
Length = 454
Score = 47.8 bits (112), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 49/194 (25%), Positives = 88/194 (45%), Gaps = 20/194 (10%)
Query: 56 IKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 115
IK P + ++G G GK+ + V A +G N I A + GE A+LIR+ + A
Sbjct: 229 IKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASAIVDKYIGESARLIREMFSYA- 287
Query: 116 DIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEE 175
K+ + C + ++++DA GR ++ T ++ + TLM + + G
Sbjct: 288 ---KEHEPCIIFMDEVDAIGGRR--FSEGTSADREIQRTLMELLNQMDGFDYLG------ 336
Query: 176 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRED--RIGVCK----GIFRNDNVADD 229
+ +I+ N TL L+R GR+++ P + R+ V K + ++ +
Sbjct: 337 --QTKVIMATNRPDTLDPALLRAGRLDRKIEIPLPNESGRLEVFKIHTANVKKHGEFDFE 394
Query: 230 DIVKLVDTFPGQSI 243
+VK+ D F G I
Sbjct: 395 AVVKMSDGFNGADI 408
>gi|254573410|ref|XP_002493814.1| One of six ATPases of the 19S regulatory particle of the 26S
proteasome [Komagataella pastoris GS115]
gi|238033613|emb|CAY71635.1| One of six ATPases of the 19S regulatory particle of the 26S
proteasome [Komagataella pastoris GS115]
Length = 416
Score = 47.8 bits (112), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 49/194 (25%), Positives = 88/194 (45%), Gaps = 20/194 (10%)
Query: 56 IKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 115
IK P + ++G G GK+ + V A +G N I A + GE A+LIR+ + A
Sbjct: 191 IKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASAIVDKYIGESARLIREMFSYA- 249
Query: 116 DIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEE 175
K+ + C + ++++DA GR ++ T ++ + TLM + + G
Sbjct: 250 ---KEHEPCIIFMDEVDAIGGRR--FSEGTSADREIQRTLMELLNQMDGFDYLG------ 298
Query: 176 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRED--RIGVCK----GIFRNDNVADD 229
+ +I+ N TL L+R GR+++ P + R+ V K + ++ +
Sbjct: 299 --QTKVIMATNRPDTLDPALLRAGRLDRKIEIPLPNESGRLEVFKIHTANVKKHGEFDFE 356
Query: 230 DIVKLVDTFPGQSI 243
+VK+ D F G I
Sbjct: 357 AVVKMSDGFNGADI 370
>gi|448318822|ref|ZP_21508334.1| proteasome-activating nucleotidase [Natronococcus jeotgali DSM
18795]
gi|445598003|gb|ELY52073.1| proteasome-activating nucleotidase [Natronococcus jeotgali DSM
18795]
Length = 405
Score = 47.8 bits (112), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 46/176 (26%), Positives = 78/176 (44%), Gaps = 16/176 (9%)
Query: 56 IKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 115
I+ P + ++G G GK+ + V + I M+ EL GE AKL+R ++
Sbjct: 180 IEPPSGVLLYGPPGTGKTMLAKAVANQTDATFIKMAGSELVHKFIGEGAKLVRDLFK--- 236
Query: 116 DIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEE 175
+ ++ + + I+++DA A + T T + V T+M + L M E+
Sbjct: 237 -VAREHEPAVIFIDEIDAIAAKR--TESKTSGDAEVQRTMMQL--------LSEMDGFED 285
Query: 176 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCKGIFRNDNVADD 229
+ II N F L ++R GR ++ P +E R + + R NVADD
Sbjct: 286 RGDIRIIAATNRFDMLDRAILRPGRFDRLIEVPKPNQEGREIIFEIHTRGMNVADD 341
>gi|401623488|gb|EJS41585.1| rpt4p [Saccharomyces arboricola H-6]
Length = 437
Score = 47.8 bits (112), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 42/153 (27%), Positives = 73/153 (47%), Gaps = 14/153 (9%)
Query: 56 IKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 115
IK P + ++G G GK+ + V A +G N I A + GE A++IR+ + A
Sbjct: 212 IKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVDKYIGESARIIREMFAYA- 270
Query: 116 DIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEE 175
K+ + C + ++++DA GR ++ T ++ + TLM + Q+ G N +
Sbjct: 271 ---KEHEPCIIFMDEVDAIGGRR--FSEGTSADREIQRTLMEL-----LTQMDGFDNLGQ 320
Query: 176 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAP 208
II+ N TL L+R GR+++ P
Sbjct: 321 ---TKIIMATNRPDTLDPALLRPGRLDRKVEIP 350
>gi|1147800|gb|AAA85134.1| Sug2p [Saccharomyces cerevisiae]
Length = 437
Score = 47.8 bits (112), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 42/153 (27%), Positives = 73/153 (47%), Gaps = 14/153 (9%)
Query: 56 IKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 115
IK P + ++G G GK+ + V A +G N I A + GE A++IR+ + A
Sbjct: 212 IKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVDKYIGESARIIREMFAYA- 270
Query: 116 DIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEE 175
K+ + C + ++++DA GR ++ T ++ + TLM + Q+ G N +
Sbjct: 271 ---KEHEPCIIFMDEVDAIGGRR--FSEGTSADREIQRTLMEL-----LTQMDGFDNLGQ 320
Query: 176 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAP 208
II+ N TL L+R GR+++ P
Sbjct: 321 ---TKIIMATNRPDTLDPALLRPGRLDRKVEIP 350
>gi|341583068|ref|YP_004763560.1| cell division protein CDC48 [Thermococcus sp. 4557]
gi|340810726|gb|AEK73883.1| cell division protein CDC48 [Thermococcus sp. 4557]
Length = 795
Score = 47.8 bits (112), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 51/201 (25%), Positives = 89/201 (44%), Gaps = 24/201 (11%)
Query: 50 FMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQ 109
FM L I P + ++G G GK+ + V + N I + E+ S GE K IR+
Sbjct: 542 FMGL-GITPPKGILLYGPPGTGKTLLAKAVANESEANFIAIKGPEVLSKWVGESEKNIRE 600
Query: 110 RYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPG 169
+R+A ++ + I+++DA A R G + V ++++N L
Sbjct: 601 IFRKA----RQAAPTVIFIDEIDAIAPRRGTDVNH-VTDRLINQLLTE------------ 643
Query: 170 MYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCKGIFRNDNVA 227
M +EN V +I N + L+R GR ++ AP + R+ + K RN +A
Sbjct: 644 MDGIQENSGVVVIAATNRPDIIDPALLRPGRFDRLILVPAPDEKARLEIFKVHTRNVPLA 703
Query: 228 DD----DIVKLVDTFPGQSID 244
+D ++ K + + G I+
Sbjct: 704 EDVRLEELAKRTEGYTGADIE 724
>gi|168003543|ref|XP_001754472.1| 26S proteasome regulatory complex, ATPase RPT4 [Physcomitrella
patens subsp. patens]
gi|162694574|gb|EDQ80922.1| 26S proteasome regulatory complex, ATPase RPT4 [Physcomitrella
patens subsp. patens]
Length = 392
Score = 47.8 bits (112), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 47/194 (24%), Positives = 91/194 (46%), Gaps = 20/194 (10%)
Query: 56 IKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 115
IK P + ++G G GK+ + + + N + + + + GE A+LIR+ + A
Sbjct: 163 IKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIVDKYIGESARLIREMFSYAR 222
Query: 116 DIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEE 175
D + C + ++++DA GR ++ T ++ + TLM + + QL G ++
Sbjct: 223 D----HQPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QLDGF---DQ 268
Query: 176 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCK----GIFRNDNVADD 229
+V +I+ N L L+R GR+++ P + R + K GI ++ + +
Sbjct: 269 LGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRTEILKIHASGITKHGEIDYE 328
Query: 230 DIVKLVDTFPGQSI 243
IVKL + F G +
Sbjct: 329 AIVKLAEGFNGADL 342
>gi|168017225|ref|XP_001761148.1| 26S proteasome regulatory complex, ATPase RPT4 [Physcomitrella
patens subsp. patens]
gi|162687488|gb|EDQ73870.1| 26S proteasome regulatory complex, ATPase RPT4 [Physcomitrella
patens subsp. patens]
Length = 392
Score = 47.8 bits (112), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 47/194 (24%), Positives = 91/194 (46%), Gaps = 20/194 (10%)
Query: 56 IKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 115
IK P + ++G G GK+ + + + N + + + + GE A+LIR+ + A
Sbjct: 163 IKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIVDKYIGESARLIREMFSYAR 222
Query: 116 DIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEE 175
D + C + ++++DA GR ++ T ++ + TLM + + QL G ++
Sbjct: 223 D----HQPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QLDGF---DQ 268
Query: 176 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCK----GIFRNDNVADD 229
+V +I+ N L L+R GR+++ P + R + K GI ++ + +
Sbjct: 269 LGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRTEILKIHASGITKHGEIDYE 328
Query: 230 DIVKLVDTFPGQSI 243
IVKL + F G +
Sbjct: 329 AIVKLAEGFNGADL 342
>gi|398365977|ref|NP_014902.3| proteasome regulatory particle base subunit RPT4 [Saccharomyces
cerevisiae S288c]
gi|2506090|sp|P53549.4|PRS10_YEAST RecName: Full=26S protease subunit RPT4; AltName: Full=26S protease
subunit SUG2; AltName: Full=Proteasomal cap subunit
gi|403071972|pdb|4B4T|L Chain L, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
gi|1420585|emb|CAA99481.1| CRL13 [Saccharomyces cerevisiae]
gi|1931623|gb|AAB51594.1| proteasome cap subunit [Saccharomyces cerevisiae]
gi|190407563|gb|EDV10830.1| 26S proteasome cap subunit component [Saccharomyces cerevisiae
RM11-1a]
gi|256269612|gb|EEU04894.1| Rpt4p [Saccharomyces cerevisiae JAY291]
gi|259149735|emb|CAY86539.1| Rpt4p [Saccharomyces cerevisiae EC1118]
gi|285815133|tpg|DAA11026.1| TPA: proteasome regulatory particle base subunit RPT4
[Saccharomyces cerevisiae S288c]
gi|323302973|gb|EGA56777.1| Rpt4p [Saccharomyces cerevisiae FostersB]
gi|323331571|gb|EGA72986.1| Rpt4p [Saccharomyces cerevisiae AWRI796]
gi|323335464|gb|EGA76750.1| Rpt4p [Saccharomyces cerevisiae Vin13]
gi|323346438|gb|EGA80726.1| Rpt4p [Saccharomyces cerevisiae Lalvin QA23]
gi|323352176|gb|EGA84713.1| Rpt4p [Saccharomyces cerevisiae VL3]
gi|349581412|dbj|GAA26570.1| K7_Rpt4p [Saccharomyces cerevisiae Kyokai no. 7]
gi|392296586|gb|EIW07688.1| Rpt4p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 437
Score = 47.8 bits (112), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 42/153 (27%), Positives = 73/153 (47%), Gaps = 14/153 (9%)
Query: 56 IKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 115
IK P + ++G G GK+ + V A +G N I A + GE A++IR+ + A
Sbjct: 212 IKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVDKYIGESARIIREMFAYA- 270
Query: 116 DIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEE 175
K+ + C + ++++DA GR ++ T ++ + TLM + Q+ G N +
Sbjct: 271 ---KEHEPCIIFMDEVDAIGGRR--FSEGTSADREIQRTLMEL-----LTQMDGFDNLGQ 320
Query: 176 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAP 208
II+ N TL L+R GR+++ P
Sbjct: 321 ---TKIIMATNRPDTLDPALLRPGRLDRKVEIP 350
>gi|168029577|ref|XP_001767302.1| 26S proteasome regulatory complex, ATPase RPT4 [Physcomitrella
patens subsp. patens]
gi|162681557|gb|EDQ67983.1| 26S proteasome regulatory complex, ATPase RPT4 [Physcomitrella
patens subsp. patens]
Length = 392
Score = 47.8 bits (112), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 47/194 (24%), Positives = 91/194 (46%), Gaps = 20/194 (10%)
Query: 56 IKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 115
IK P + ++G G GK+ + + + N + + + + GE A+LIR+ + A
Sbjct: 163 IKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIVDKYIGESARLIREMFSYAR 222
Query: 116 DIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEE 175
D + C + ++++DA GR ++ T ++ + TLM + + QL G ++
Sbjct: 223 D----HQPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QLDGF---DQ 268
Query: 176 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCK----GIFRNDNVADD 229
+V +I+ N L L+R GR+++ P + R + K GI ++ + +
Sbjct: 269 LGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRTEILKIHASGITKHGEIDYE 328
Query: 230 DIVKLVDTFPGQSI 243
IVKL + F G +
Sbjct: 329 AIVKLAEGFNGADL 342
>gi|300711801|ref|YP_003737615.1| proteasome-activating nucleotidase [Halalkalicoccus jeotgali B3]
gi|448295487|ref|ZP_21485553.1| proteasome-activating nucleotidase [Halalkalicoccus jeotgali B3]
gi|299125484|gb|ADJ15823.1| proteasome-activating nucleotidase [Halalkalicoccus jeotgali B3]
gi|445583944|gb|ELY38270.1| proteasome-activating nucleotidase [Halalkalicoccus jeotgali B3]
Length = 403
Score = 47.8 bits (112), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 48/176 (27%), Positives = 76/176 (43%), Gaps = 17/176 (9%)
Query: 64 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 123
++G G GK+ + V + I M+ EL GE AKL+R + ++ + +
Sbjct: 187 LYGPPGTGKTMLAKAVANETDATFIKMAGSELVHKFIGEGAKLVRDLF----EVARSHEP 242
Query: 124 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 183
L I+++DA A + T T + V T+M + L M E+ V II
Sbjct: 243 AVLFIDEIDAIASKR--TESKTSGDAEVQRTMMQL--------LSEMDGFEDRGEVRIIA 292
Query: 184 TGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCKGIFRNDNVADD-DIVKLVD 236
N F L ++R GR ++ P E R + + R NVA+D D KL +
Sbjct: 293 ATNRFDMLDRAILRPGRFDRLIEVPKPNAEGRELIFEIHTREMNVAEDVDFAKLAE 348
>gi|345872617|ref|ZP_08824548.1| AAA ATPase central domain protein [Thiorhodococcus drewsii AZ1]
gi|343918280|gb|EGV29046.1| AAA ATPase central domain protein [Thiorhodococcus drewsii AZ1]
Length = 504
Score = 47.8 bits (112), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 40/147 (27%), Positives = 67/147 (45%), Gaps = 23/147 (15%)
Query: 60 LILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIK 119
L+LG+ GG GKS + V ++G+ + + G L GE K +R+ E AD++
Sbjct: 268 LLLGVQGG---GKSLAAKAVAGRLGVPLLRLDFGALYDKYIGETEKNLRKAL-ETADLMS 323
Query: 120 KGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRV 179
C L I++++ G G+ V +++ L +A E RV
Sbjct: 324 P---CVLWIDEIEKGIA--TGSEDEGVGRRVLGTLLTWMA--------------ERKSRV 364
Query: 180 PIIVTGNDFSTLYAPLIRDGRMEKFYW 206
+ T ND S L LIR GR+++ ++
Sbjct: 365 FLAATANDISRLPPELIRKGRIDELFF 391
>gi|365758247|gb|EHN00098.1| Rpt4p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 437
Score = 47.8 bits (112), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 42/153 (27%), Positives = 73/153 (47%), Gaps = 14/153 (9%)
Query: 56 IKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 115
IK P + ++G G GK+ + V A +G N I A + GE A++IR+ + A
Sbjct: 212 IKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVDKYIGESARIIREMFAYA- 270
Query: 116 DIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEE 175
K+ + C + ++++DA GR ++ T ++ + TLM + Q+ G N +
Sbjct: 271 ---KEHEPCIIFMDEVDAIGGRR--FSEGTSADREIQRTLMEL-----LTQMDGFDNLGQ 320
Query: 176 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAP 208
II+ N TL L+R GR+++ P
Sbjct: 321 ---TKIIMATNRPDTLDPALLRPGRLDRKVEIP 350
>gi|332374594|gb|AEE62438.1| unknown [Dendroctonus ponderosae]
Length = 392
Score = 47.8 bits (112), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 45/186 (24%), Positives = 89/186 (47%), Gaps = 20/186 (10%)
Query: 64 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 123
++G G GK+ V +++ N + + + + GE A+LIR+ + A D +
Sbjct: 175 LYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIREMFNYAKD----HQP 230
Query: 124 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 183
C + ++++DA GR ++ T ++ + TLM + + Q+ G + +V +I+
Sbjct: 231 CIIFMDEIDAIGGRR--FSEGTSADREIQLTLMELLN-----QMDGF---DSLGQVKMIM 280
Query: 184 TGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCK----GIFRNDNVADDDIVKLVDT 237
N TL L+R GR+++ P + R+ + K I ++ + + IVKL D+
Sbjct: 281 ATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLEILKIHAGPIAKHGEIDYEAIVKLSDS 340
Query: 238 FPGQSI 243
F G +
Sbjct: 341 FNGADL 346
>gi|218198520|gb|EEC80947.1| hypothetical protein OsI_23654 [Oryza sativa Indica Group]
Length = 409
Score = 47.8 bits (112), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 44/186 (23%), Positives = 89/186 (47%), Gaps = 20/186 (10%)
Query: 64 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 123
++G G GK+ + + + N + + + + GE A+LIR+ + A ++ +
Sbjct: 188 LYGPPGTGKTLLARAIASNIDANFLKIVSSAIIDKYIGESARLIREMFSYA----REHQP 243
Query: 124 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 183
C + ++++DA GR ++ T ++ + TLM + + QL G +E +V +I+
Sbjct: 244 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QLDGF---DELGKVKMIM 293
Query: 184 TGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCK----GIFRNDNVADDDIVKLVDT 237
N L L+R GR+++ P + R+ V K GI ++ + + +VKL +
Sbjct: 294 ATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEVLKIHAAGIAKHGEIDYEAVVKLAEG 353
Query: 238 FPGQSI 243
F G +
Sbjct: 354 FNGADL 359
>gi|253745344|gb|EET01340.1| Transitional endoplasmic reticulum ATPase [Giardia intestinalis
ATCC 50581]
Length = 787
Score = 47.8 bits (112), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 45/177 (25%), Positives = 76/177 (42%), Gaps = 26/177 (14%)
Query: 64 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 123
++ GQGK+ C+ + AK IN I + EL + GE + IR + A +
Sbjct: 532 MFSVPGQGKTLICKALSAKAEINFISVKGPELLNMYYGESERAIRNVFARA----RASAP 587
Query: 124 CCLMINDLDAGAGRMGGTTQYT-VNNQMVNATLMNIADNPTCVQLPGMYN---------- 172
C L +++ D+ A R G + V++++VN L +L G++N
Sbjct: 588 CILFLDEFDSLAKRRGSGGSSSDVSDKVVNTLL---------TELDGLHNNLSGEHSLNA 638
Query: 173 KEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCKGIFRNDNVA 227
K ++ II N + L+R GR +K + P EDR+ + I +A
Sbjct: 639 KNAQDQIFIIAATNRIDIIDPGLLRPGRFDKIIYIPLPNLEDRVNILYTIITRRRIA 695
>gi|403225149|gb|AFR24761.1| ATPase AAA family [uncultured Pelagomonas]
Length = 493
Score = 47.8 bits (112), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 45/196 (22%), Positives = 85/196 (43%), Gaps = 27/196 (13%)
Query: 58 VPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADI 117
VP L + G +G GKS + + + + + G L +G GE +R+ R A +
Sbjct: 258 VPRGLLLVGVQGTGKSLTAKAIAHDWQLPLLRLDFGRLFAGIVGESESRVREMIRVAEAL 317
Query: 118 IKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENP 177
C + I+++D + G N+++ AT + + E+
Sbjct: 318 ----SPCIVWIDEIDKSFNQSEGKGDSGTTNRVL-ATFLT-------------WLSEKTS 359
Query: 178 RVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCKGI---FRNDNVADDDIV 232
+V ++ T N+F L LIR GR ++ ++ P +R + + + R D+V + D+
Sbjct: 360 QVFVVATANNFEVLPLELIRKGRFDEIFFVGLPVESERKQIFEVLLSQLRPDSVQNYDL- 418
Query: 233 KLVDTFPGQSIDFFGA 248
+ ++IDF GA
Sbjct: 419 ---QSLSKKAIDFSGA 431
>gi|392577846|gb|EIW70974.1| hypothetical protein TREMEDRAFT_37495 [Tremella mesenterica DSM
1558]
Length = 404
Score = 47.8 bits (112), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 46/194 (23%), Positives = 93/194 (47%), Gaps = 20/194 (10%)
Query: 56 IKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 115
IK P + ++G G GK+ V A + N + + + + GE A+L+R+ + A
Sbjct: 179 IKPPKGVLLYGPPGTGKTLLARAVAATLDTNFLKVVSSAIVDKYIGESARLVREMFAYA- 237
Query: 116 DIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEE 175
K+ + C + ++++DA GR ++ + ++ + TLM + + Q+ G +
Sbjct: 238 ---KEHEPCIIFMDEIDAIGGRR--FSEGSSADREIQRTLMELLN-----QMDGF---DS 284
Query: 176 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGV----CKGIFRNDNVADD 229
+ +I+ N TL L+R GR+++ P + R+ + KGI ++ ++ +
Sbjct: 285 LGKTKMIMATNRPDTLDPALLRPGRLDRKIEIPLPNEQGRLEILKIHAKGINKSGDIDYE 344
Query: 230 DIVKLVDTFPGQSI 243
+VKL D F G +
Sbjct: 345 AVVKLSDGFNGADL 358
>gi|14590568|ref|NP_142636.1| cell division control [Pyrococcus horikoshii OT3]
gi|3257095|dbj|BAA29778.1| 840aa long hypothetical cell division control protein (transitional
endoplasmic reticulum ATPase) [Pyrococcus horikoshii
OT3]
Length = 840
Score = 47.8 bits (112), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 44/168 (26%), Positives = 75/168 (44%), Gaps = 18/168 (10%)
Query: 64 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 123
++G G GK+ + V + N I + E+ S GE K IR+ +R+A ++
Sbjct: 586 LYGPPGTGKTLLAKAVATESEANFIAVRGPEVLSKWVGESEKRIREIFRKA----RQAAP 641
Query: 124 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 183
+ I+++DA A G + V ++++N L ++ G+ EN V +I
Sbjct: 642 AIIFIDEIDAIAPARGTSEGEKVTDRIINQLL---------TEMDGLV---ENSGVVVIA 689
Query: 184 TGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCKGIFRNDNVADD 229
N L L+R GR ++ AP E R + K R+ +ADD
Sbjct: 690 ATNRPDILDPALLRPGRFDRLILVPAPDEEARFEIFKVHTRSMPLADD 737
>gi|156102963|ref|XP_001617174.1| AAA family ATPase [Plasmodium vivax Sal-1]
gi|148806048|gb|EDL47447.1| AAA family ATPase, putative [Plasmodium vivax]
Length = 1070
Score = 47.8 bits (112), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 62/266 (23%), Positives = 111/266 (41%), Gaps = 25/266 (9%)
Query: 24 NLDNTIDGLYIAPAFMDKLVVHIT-KNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAK 82
NLDN I K ++ + N IK + + ++G G GK+ + + +
Sbjct: 571 NLDNIGSLKRIKKVLETKFILPVKYANIYKHLGIKKSMGILLYGPPGCGKTMLAKAISNE 630
Query: 83 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTT 142
M N I + E+ + GE K +R+ + A+ K C + +++D+
Sbjct: 631 MKANFIAIKGPEILNKYVGESEKKVREIFSYASIY----KPCLIFFDEIDSICINRANNK 686
Query: 143 QYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRME 202
++++VN L ++ G+ +E V II T N + L+R GR +
Sbjct: 687 AAAASDRIVNQLL---------TEMDGLSQRES---VYIIATTNRPDIIDKALLRSGRFD 734
Query: 203 KFYW--APTREDRIGVCKGIFRNDNV-ADDDIVKLVDTFPGQS-IDFFGALR--ARVYDD 256
+ + P + RI + + + +N + AD D K+ G S D +G LR A +
Sbjct: 735 QLIYISLPKYQGRIDILRKLAKNMPLHADVDFAKISRLTKGYSGADLYGVLRESAFIALQ 794
Query: 257 EVRKWIS--GVGVGSIGKSLVNSKEA 280
E R I G+ S G + + +EA
Sbjct: 795 ECRDKIDLLNSGLSSAGDATQHCREA 820
>gi|425899584|ref|ZP_18876175.1| ATPase, AAA family [Pseudomonas chlororaphis subsp. aureofaciens
30-84]
gi|397890300|gb|EJL06782.1| ATPase, AAA family [Pseudomonas chlororaphis subsp. aureofaciens
30-84]
Length = 853
Score = 47.8 bits (112), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 49/193 (25%), Positives = 83/193 (43%), Gaps = 33/193 (17%)
Query: 60 LILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIK 119
L+LGI G GKS + + G + + + G L+ GE + IR R I+
Sbjct: 480 LLLGI---PGTGKSLAAKEIARLWGFSLVRLDMGALQDKWLGESERNIRSALR----IVD 532
Query: 120 KGKMCCLMINDLDAGAGRMGGTTQYTVN-NQMVNATLMNIADNPTCVQLPGMYNKEENPR 178
C L I+++D G G+ ++T + Q VNATL+ + +E
Sbjct: 533 AMSPCILWIDEIDKGLGQ-----EHTHSAAQNVNATLLT-------------WLQESRAP 574
Query: 179 VPIIVTGNDFSTLYAPLIRDGRMEK--FYWAPTREDRIGVCKGIF--RNDNVAD---DDI 231
++ T N F L L R GR + F+ P E R+ + + RN +++ D +
Sbjct: 575 AFVVATANRFGGLPPELTRAGRFDGRFFFGCPGSEGRLEILRIHLAARNCELSEAPLDTV 634
Query: 232 VKLVDTFPGQSID 244
+ L + F G ++
Sbjct: 635 ISLTEGFTGAELE 647
>gi|269121222|ref|YP_003309399.1| ATP-dependent metalloprotease FtsH [Sebaldella termitidis ATCC
33386]
gi|268615100|gb|ACZ09468.1| ATP-dependent metalloprotease FtsH [Sebaldella termitidis ATCC
33386]
Length = 682
Score = 47.8 bits (112), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 49/194 (25%), Positives = 87/194 (44%), Gaps = 20/194 (10%)
Query: 57 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAD 116
+VP + + G G GK+ + V + G + +S E G A +R + +A
Sbjct: 233 RVPKGVLLLGRPGTGKTLLAKAVAGESGASFFSISGSEFVEMFVGVGASRVRDLFEKA-- 290
Query: 117 IIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEEN 176
KK + + I+++DA GR GT ++ N++ TL N V++ G E +
Sbjct: 291 --KKSRPAIIFIDEIDA-VGRKRGTGKHGGNDER-EQTL-----NQLLVEMDGF---ETD 338
Query: 177 PRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCKGIFRNDNVADD----D 230
++ ++ N L L+R GR ++ AP + RI + + +N +ADD D
Sbjct: 339 EKIIVVAATNREDVLDPALLRAGRFDRRISVDAPDVQGRIAILEVHAKNKKLADDVKLED 398
Query: 231 IVKLVDTFPGQSID 244
I K+ F G ++
Sbjct: 399 IAKITPGFVGADLE 412
>gi|413954589|gb|AFW87238.1| hypothetical protein ZEAMMB73_492879 [Zea mays]
Length = 447
Score = 47.8 bits (112), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 47/191 (24%), Positives = 92/191 (48%), Gaps = 20/191 (10%)
Query: 56 IKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 115
IK P + ++G G GK+ + + + N + + + + GE A+LIR+ + A
Sbjct: 218 IKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFNYA- 276
Query: 116 DIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEE 175
++ + C + ++++DA GR ++ T ++ + TLM + + QL G +E
Sbjct: 277 ---REHQPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QLDGF---DE 323
Query: 176 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCK----GIFRNDNVADD 229
+V +I+ N L L+R GR+++ P + R+ V K GI ++ + +
Sbjct: 324 LGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQGRMEVLKIHAAGIAKHGEIDYE 383
Query: 230 DIVKLVDTFPG 240
+VKL + F G
Sbjct: 384 AVVKLAEGFNG 394
>gi|260791609|ref|XP_002590821.1| hypothetical protein BRAFLDRAFT_90046 [Branchiostoma floridae]
gi|229276018|gb|EEN46832.1| hypothetical protein BRAFLDRAFT_90046 [Branchiostoma floridae]
Length = 753
Score = 47.8 bits (112), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 44/188 (23%), Positives = 94/188 (50%), Gaps = 17/188 (9%)
Query: 56 IKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 115
I P+ + + G G GK+ + V A+ + + ++ ++ + GE + +R+ ++EA
Sbjct: 226 INRPMGILLLGPPGVGKTSLVKTVAAECHAHLVALNGPDVFGPHPGESEENLRRVFQEAV 285
Query: 116 DIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEE 175
I ++G C L I++LDA + GG+ + + N+MV A ++ + D +
Sbjct: 286 TISEEGP-CVLFIDELDALCPKRGGSGK-SQENRMV-AQMLTLMD-----------GQAG 331
Query: 176 NPRVPIIVTGNDFSTLYAPLIRDGRMEK--FYWAPTREDRIGVCKGIFRNDNVADD-DIV 232
R+ ++ N + + L R GR +K P +++R + + + R+ ++A+D D+
Sbjct: 332 RGRLVVVAATNRPNAIDPALRRPGRFDKEVHVGVPNQQEREEILRVVSRDMSLAEDVDLN 391
Query: 233 KLVDTFPG 240
+L + PG
Sbjct: 392 RLAEMTPG 399
>gi|260821714|ref|XP_002606248.1| hypothetical protein BRAFLDRAFT_84010 [Branchiostoma floridae]
gi|229291589|gb|EEN62258.1| hypothetical protein BRAFLDRAFT_84010 [Branchiostoma floridae]
Length = 751
Score = 47.8 bits (112), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 44/188 (23%), Positives = 94/188 (50%), Gaps = 17/188 (9%)
Query: 56 IKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 115
I P+ + + G G GK+ + V A+ + + ++ ++ + GE + +R+ ++EA
Sbjct: 226 INRPMGILLLGPPGVGKTSLVKTVAAECHAHLVALNGPDVFGPHPGESEENLRRVFQEAV 285
Query: 116 DIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEE 175
I ++G C L I++LDA + GG+ + + N+MV A ++ + D +
Sbjct: 286 TISEEGP-CVLFIDELDALCPKRGGSGK-SQENRMV-AQMLTLMD-----------GQAG 331
Query: 176 NPRVPIIVTGNDFSTLYAPLIRDGRMEK--FYWAPTREDRIGVCKGIFRNDNVADD-DIV 232
R+ ++ N + + L R GR +K P +++R + + + R+ ++A+D D+
Sbjct: 332 RGRLVVVAATNRPNAIDPALRRPGRFDKEVHVGVPNQQEREEILRVVSRDMSLAEDVDLN 391
Query: 233 KLVDTFPG 240
+L + PG
Sbjct: 392 RLAEMTPG 399
>gi|400597658|gb|EJP65388.1| ATPase protein [Beauveria bassiana ARSEF 2860]
Length = 733
Score = 47.8 bits (112), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 41/169 (24%), Positives = 73/169 (43%), Gaps = 18/169 (10%)
Query: 64 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 123
+WG G GK+ + V + + I+++ EL + GE + +R+ + A +
Sbjct: 498 LWGPPGCGKTLVAQAVANEAQASFILINGPELLNKYVGESERAVRELFSRA----RSSTP 553
Query: 124 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 183
C L ++ D+ A R G ++VNA L +L G ++ V +I
Sbjct: 554 CILFFDEFDSIAPRRDGGGASEAGTRVVNALL---------TELDGARGRDG---VYVIG 601
Query: 184 TGNDFSTLYAPLIRDGRMEK--FYWAPTREDRIGVCKGIFRNDNVADDD 230
T N + ++R GR+ K F PT +R+ + I+R +V D
Sbjct: 602 TTNRPDMIDDAMLRPGRLSKQLFLDLPTAAERVDILLAIYRTRHVGATD 650
>gi|389846288|ref|YP_006348527.1| proteasome-activating nucleotidase [Haloferax mediterranei ATCC
33500]
gi|388243594|gb|AFK18540.1| proteasome-activating nucleotidase [Haloferax mediterranei ATCC
33500]
Length = 401
Score = 47.8 bits (112), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 46/176 (26%), Positives = 79/176 (44%), Gaps = 17/176 (9%)
Query: 64 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 123
++G G GK+ + V + + I M+ EL GE AKL+R + ++ ++ +
Sbjct: 184 LYGPPGTGKTMLAKAVANQTNASFIKMAGSELVHKFIGEGAKLVRDLF----EVARENEP 239
Query: 124 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 183
+ I+++DA A + T T + V T+M + L M +E + II
Sbjct: 240 AVIFIDEIDAIASKR--TDSKTSGDAEVQRTMMQL--------LAEMDGFDERGNIRIIA 289
Query: 184 TGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCKGIFRNDNVADD-DIVKLVD 236
N F L ++R GR ++ P + R + K R NV+DD D V+L +
Sbjct: 290 ATNRFDMLDPAILRPGRFDRLIEVPKPNADGREIIFKIHTRKMNVSDDVDFVELAE 345
>gi|444318988|ref|XP_004180151.1| hypothetical protein TBLA_0D01240 [Tetrapisispora blattae CBS 6284]
gi|387513193|emb|CCH60632.1| hypothetical protein TBLA_0D01240 [Tetrapisispora blattae CBS 6284]
Length = 443
Score = 47.8 bits (112), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 42/153 (27%), Positives = 73/153 (47%), Gaps = 14/153 (9%)
Query: 56 IKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 115
IK P + ++G G GK+ + V A +G N I A + GE A++IR+ + A
Sbjct: 218 IKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVDKYIGESARIIREMFAYA- 276
Query: 116 DIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEE 175
K+ + C + ++++DA GR ++ T ++ + TLM + Q+ G N +
Sbjct: 277 ---KEHEPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMEL-----LSQMDGFDNLGQ 326
Query: 176 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAP 208
II+ N TL L+R GR+++ P
Sbjct: 327 T---KIIMATNRPDTLDPALLRPGRLDRKIEIP 356
>gi|56755741|gb|AAW26049.1| SJCHGC06030 protein [Schistosoma japonicum]
gi|226469386|emb|CAX70172.1| 26S proteasome regulatory subunit T4 [Schistosoma japonicum]
gi|226469388|emb|CAX70173.1| 26S proteasome regulatory subunit T4 [Schistosoma japonicum]
Length = 395
Score = 47.8 bits (112), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 46/186 (24%), Positives = 89/186 (47%), Gaps = 20/186 (10%)
Query: 64 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 123
++G G GK+ V +++ +N + + + + GE A+LIR+ + A D +
Sbjct: 178 LYGPPGTGKTLLARAVASQLDVNFLKVVSSGIVDKYIGESARLIREMFSYARD----HQP 233
Query: 124 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 183
C + ++++DA GR T+ T ++ + TLM + + Q+ G + +V +I+
Sbjct: 234 CIIFMDEIDAIGGRR--FTEGTSADREIQRTLMELLN-----QMDGF---DALGQVKMIM 283
Query: 184 TGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCK----GIFRNDNVADDDIVKLVDT 237
N TL L+R GR+++ P + R+ V K I ++ + + +VKL D
Sbjct: 284 ATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLDVLKIHAAPIAKHGEIDWEAVVKLSDG 343
Query: 238 FPGQSI 243
F G +
Sbjct: 344 FNGADL 349
>gi|448616093|ref|ZP_21664803.1| proteasome-activating nucleotidase [Haloferax mediterranei ATCC
33500]
gi|445750748|gb|EMA02185.1| proteasome-activating nucleotidase [Haloferax mediterranei ATCC
33500]
Length = 405
Score = 47.8 bits (112), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 46/176 (26%), Positives = 79/176 (44%), Gaps = 17/176 (9%)
Query: 64 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 123
++G G GK+ + V + + I M+ EL GE AKL+R + ++ ++ +
Sbjct: 188 LYGPPGTGKTMLAKAVANQTNASFIKMAGSELVHKFIGEGAKLVRDLF----EVARENEP 243
Query: 124 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 183
+ I+++DA A + T T + V T+M + L M +E + II
Sbjct: 244 AVIFIDEIDAIASKR--TDSKTSGDAEVQRTMMQL--------LAEMDGFDERGNIRIIA 293
Query: 184 TGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCKGIFRNDNVADD-DIVKLVD 236
N F L ++R GR ++ P + R + K R NV+DD D V+L +
Sbjct: 294 ATNRFDMLDPAILRPGRFDRLIEVPKPNADGREIIFKIHTRKMNVSDDVDFVELAE 349
>gi|403216832|emb|CCK71328.1| hypothetical protein KNAG_0G02720 [Kazachstania naganishii CBS
8797]
Length = 444
Score = 47.4 bits (111), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 51/194 (26%), Positives = 88/194 (45%), Gaps = 20/194 (10%)
Query: 56 IKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 115
IK P + ++G G GK+ + V A +G N I A + GE A++IR+ + A
Sbjct: 219 IKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVDKYIGESARIIREMFAYA- 277
Query: 116 DIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEE 175
K+ + C + ++++DA GR ++ T ++ + TLM + Q+ G N +
Sbjct: 278 ---KEHEPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMEL-----LSQMDGFDNLGQ 327
Query: 176 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCK----GIFRNDNVADD 229
II+ N TL L+R GR+++ P R+ + K + ++ D
Sbjct: 328 ---TKIIMATNRPDTLDPALLRPGRLDRKIEINLPNEAGRLEIFKIHTANVKKHGEFDFD 384
Query: 230 DIVKLVDTFPGQSI 243
VK+ D F G I
Sbjct: 385 AAVKMSDGFNGADI 398
>gi|448739676|ref|ZP_21721688.1| proteasome-activating nucleotidase [Halococcus thailandensis JCM
13552]
gi|445799295|gb|EMA49676.1| proteasome-activating nucleotidase [Halococcus thailandensis JCM
13552]
Length = 403
Score = 47.4 bits (111), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 47/176 (26%), Positives = 76/176 (43%), Gaps = 16/176 (9%)
Query: 56 IKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 115
I+ P + + G G GK+ + V + I M+ EL GE AKL+R +
Sbjct: 179 IEPPSGVLLHGPPGTGKTMLAKAVANQTDATFIKMAGSELVHKFIGEGAKLVRDLF---- 234
Query: 116 DIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEE 175
++ ++ + + I+++DA A + T T + V T+M + L M EE
Sbjct: 235 EVAREHEPAVIFIDEIDAIASKR--TDSKTSGDAEVQRTMMQL--------LSEMDGFEE 284
Query: 176 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCKGIFRNDNVADD 229
V II N F L ++R GR ++ P E R + + R N+ADD
Sbjct: 285 RGEVRIIAATNRFDMLDRAILRPGRFDRLIEVPKPNAEGREKIFEIHTRGMNLADD 340
>gi|300711240|ref|YP_003737054.1| cell division control protein 48 [Halalkalicoccus jeotgali B3]
gi|448296658|ref|ZP_21486712.1| cell division control protein 48 [Halalkalicoccus jeotgali B3]
gi|299124923|gb|ADJ15262.1| cell division control protein 48 [Halalkalicoccus jeotgali B3]
gi|445580951|gb|ELY35317.1| cell division control protein 48 [Halalkalicoccus jeotgali B3]
Length = 701
Score = 47.4 bits (111), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 39/147 (26%), Positives = 63/147 (42%), Gaps = 22/147 (14%)
Query: 64 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 123
++G G GK+ + ++ G+N I ++ EL GE K +R+ + A ++
Sbjct: 485 LYGPPGTGKTLLARAIASESGVNFIHVAGPELLDRYVGESEKAVRKVFERA----RQTAP 540
Query: 124 CCLMINDLDAGAGRMGGTTQYT--VNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPI 181
+ +++DA A GG + T V +Q++ L +ADNP V L KE
Sbjct: 541 SIVFFDEIDALAAERGGGHEVTERVVSQLLT-ELDGLADNPNLVVLAATNRKE------- 592
Query: 182 IVTGNDFSTLYAPLIRDGRMEKFYWAP 208
L LIR GR+E P
Sbjct: 593 --------ALDRALIRPGRLETHIEVP 611
>gi|226469390|emb|CAX70174.1| 26S proteasome regulatory subunit T4 [Schistosoma japonicum]
Length = 395
Score = 47.4 bits (111), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 46/186 (24%), Positives = 89/186 (47%), Gaps = 20/186 (10%)
Query: 64 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 123
++G G GK+ V +++ +N + + + + GE A+LIR+ + A D +
Sbjct: 178 LYGPPGTGKTLLARAVASQLDVNFLKVVSSGIVDKYIGESARLIREMFSYARD----HQP 233
Query: 124 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 183
C + ++++DA GR T+ T ++ + TLM + + Q+ G + +V +I+
Sbjct: 234 CIIFMDEIDAIGGRR--FTEGTSADREIQRTLMELLN-----QMDGF---DALGQVKMIM 283
Query: 184 TGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCK----GIFRNDNVADDDIVKLVDT 237
N TL L+R GR+++ P + R+ V K I ++ + + +VKL D
Sbjct: 284 ATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLDVLKIHAAPIAKHGEIDWEAVVKLSDG 343
Query: 238 FPGQSI 243
F G +
Sbjct: 344 FNGADL 349
>gi|156842059|ref|XP_001644399.1| hypothetical protein Kpol_1064p22 [Vanderwaltozyma polyspora DSM
70294]
gi|156115041|gb|EDO16541.1| hypothetical protein Kpol_1064p22 [Vanderwaltozyma polyspora DSM
70294]
Length = 432
Score = 47.4 bits (111), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 42/153 (27%), Positives = 73/153 (47%), Gaps = 14/153 (9%)
Query: 56 IKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 115
IK P + ++G G GK+ + V A +G N I A + GE A++IR+ + A
Sbjct: 207 IKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVDKYIGESARIIREMFAYA- 265
Query: 116 DIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEE 175
K+ + C + ++++DA GR ++ T ++ + TLM + Q+ G N +
Sbjct: 266 ---KEHEPCIIFMDEVDAIGGRR--FSEGTSADREIQRTLMEL-----LTQMDGFDNLGQ 315
Query: 176 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAP 208
II+ N TL L+R GR+++ P
Sbjct: 316 T---KIIMATNRPDTLDPALLRPGRLDRKIEIP 345
>gi|224085722|ref|XP_002307679.1| predicted protein [Populus trichocarpa]
gi|222857128|gb|EEE94675.1| predicted protein [Populus trichocarpa]
Length = 402
Score = 47.4 bits (111), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 46/194 (23%), Positives = 93/194 (47%), Gaps = 20/194 (10%)
Query: 56 IKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 115
IK P + ++G G GK+ + + + N + + + + GE A+LIR+ + A
Sbjct: 173 IKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYAR 232
Query: 116 DIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEE 175
D + C + ++++DA GR ++ T ++ + TLM + + QL G ++
Sbjct: 233 D----HQPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QLDGF---DQ 278
Query: 176 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCK----GIFRNDNVADD 229
+V +I+ N L L+R GR+++ P + R+ + K GI ++ ++ +
Sbjct: 279 LGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGDIDYE 338
Query: 230 DIVKLVDTFPGQSI 243
+VKL + F G +
Sbjct: 339 AVVKLAEGFNGADL 352
>gi|151945344|gb|EDN63587.1| 26S proteasome cap subunit component [Saccharomyces cerevisiae
YJM789]
Length = 437
Score = 47.4 bits (111), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 42/153 (27%), Positives = 72/153 (47%), Gaps = 14/153 (9%)
Query: 56 IKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 115
IK P + ++G G GK+ + V A +G N I A + GE A++IR+ + A
Sbjct: 212 IKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVDKYIGESARIIREMFAYA- 270
Query: 116 DIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEE 175
K+ + C + ++++DA GR ++ T ++ + TLM + Q+ G N +
Sbjct: 271 ---KEHEPCIIFMDEVDAIGGRR--FSEGTSADREIQRTLMEL-----LTQMDGFDNLGQ 320
Query: 176 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAP 208
II+ N TL L+R GR+ + P
Sbjct: 321 ---TKIIMATNRPDTLDPALLRPGRLHRKVEIP 350
>gi|71028288|ref|XP_763787.1| 26S proteasome regulatory subunit [Theileria parva strain Muguga]
gi|68350741|gb|EAN31504.1| 26S proteasome regulatory subunit, putative [Theileria parva]
Length = 415
Score = 47.4 bits (111), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 52/194 (26%), Positives = 88/194 (45%), Gaps = 20/194 (10%)
Query: 56 IKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 115
IK P + ++G G GK+ + +G N + + A + GE AK+IR+ + A
Sbjct: 190 IKPPKGVLLYGPPGTGKTLLARALANDLGCNFLKVVASAVVDKYIGESAKIIREMFGYAK 249
Query: 116 DIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEE 175
D + C + I+++DA GR +Q T ++ + TLM + L G +E
Sbjct: 250 D----NQPCIIFIDEIDAIGGRR--FSQGTSADREIQRTLMEL-----LTHLDGF---DE 295
Query: 176 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRED--RIGVCKGIFRNDNVAD----D 229
+V II+ N L L+R GR+++ P + RI + K + N+ +
Sbjct: 296 LGQVKIIMATNRPDVLDPALLRPGRIDRKIEIPLPNETARIEILKIHTQKLNIQYPINFN 355
Query: 230 DIVKLVDTFPGQSI 243
+I KL D F G +
Sbjct: 356 NICKLCDGFNGADL 369
>gi|448726013|ref|ZP_21708440.1| proteasome-activating nucleotidase [Halococcus morrhuae DSM 1307]
gi|445797032|gb|EMA47516.1| proteasome-activating nucleotidase [Halococcus morrhuae DSM 1307]
Length = 403
Score = 47.4 bits (111), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 47/176 (26%), Positives = 76/176 (43%), Gaps = 16/176 (9%)
Query: 56 IKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 115
I+ P + + G G GK+ + V + I M+ EL GE AKL+R +
Sbjct: 179 IEPPSGVLLHGPPGTGKTMLAKAVANQTDATFIKMAGSELVHKFIGEGAKLVRDLF---- 234
Query: 116 DIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEE 175
++ ++ + + I+++DA A + T T + V T+M + L M EE
Sbjct: 235 EVAREHEPAVIFIDEIDAIASKR--TDSKTSGDAEVQRTMMQL--------LSEMDGFEE 284
Query: 176 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCKGIFRNDNVADD 229
V II N F L ++R GR ++ P E R + + R N+ADD
Sbjct: 285 RGEVRIIAATNRFDMLDRAILRPGRFDRLIEVPKPNAEGREKIFEIHTRGMNLADD 340
>gi|391332687|ref|XP_003740763.1| PREDICTED: 26S protease regulatory subunit 10B-like [Metaseiulus
occidentalis]
Length = 403
Score = 47.4 bits (111), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 46/186 (24%), Positives = 88/186 (47%), Gaps = 20/186 (10%)
Query: 64 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 123
++G G GK+ V + M N + + + + GE A+LIR+ + A D +
Sbjct: 186 LYGPPGTGKTLLARAVASNMDSNFLKVVSSAIVDKYIGESARLIREMFNYARD----HQP 241
Query: 124 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 183
C + ++++DA GR ++ T ++ + TLM + + Q+ G + +V II+
Sbjct: 242 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGF---DALGQVKIIM 291
Query: 184 TGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCK----GIFRNDNVADDDIVKLVDT 237
N TL L+R GR+++ P + R+ + K I ++ ++ + +VKL D
Sbjct: 292 ATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLDILKIHARSITKHGDIDWEAVVKLSDG 351
Query: 238 FPGQSI 243
F G +
Sbjct: 352 FNGADL 357
>gi|410074777|ref|XP_003954971.1| hypothetical protein KAFR_0A04010 [Kazachstania africana CBS 2517]
gi|372461553|emb|CCF55836.1| hypothetical protein KAFR_0A04010 [Kazachstania africana CBS 2517]
Length = 424
Score = 47.4 bits (111), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 42/153 (27%), Positives = 73/153 (47%), Gaps = 14/153 (9%)
Query: 56 IKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 115
IK P + ++G G GK+ + V A +G N I A + GE A++IR+ + A
Sbjct: 199 IKPPKGVLLYGPPGTGKTLLAKAVSATIGANFIFSPASGIVDKYIGESARIIREMFAYA- 257
Query: 116 DIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEE 175
K+ + C + ++++DA GR ++ T ++ + TLM + Q+ G N +
Sbjct: 258 ---KEHEPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMEL-----LTQMDGFDNLGQ 307
Query: 176 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAP 208
II+ N TL L+R GR+++ P
Sbjct: 308 ---TKIIMATNRPDTLDPALLRPGRLDRKIEIP 337
>gi|224062085|ref|XP_002300747.1| predicted protein [Populus trichocarpa]
gi|118483383|gb|ABK93592.1| unknown [Populus trichocarpa]
gi|222842473|gb|EEE80020.1| predicted protein [Populus trichocarpa]
Length = 402
Score = 47.4 bits (111), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 46/194 (23%), Positives = 93/194 (47%), Gaps = 20/194 (10%)
Query: 56 IKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 115
IK P + ++G G GK+ + + + N + + + + GE A+LIR+ + A
Sbjct: 173 IKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYAR 232
Query: 116 DIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEE 175
D + C + ++++DA GR ++ T ++ + TLM + + QL G ++
Sbjct: 233 D----HQPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QLDGF---DQ 278
Query: 176 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCK----GIFRNDNVADD 229
+V +I+ N L L+R GR+++ P + R+ + K GI ++ ++ +
Sbjct: 279 LGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGDIDYE 338
Query: 230 DIVKLVDTFPGQSI 243
+VKL + F G +
Sbjct: 339 AVVKLAEGFNGADL 352
>gi|448292770|ref|ZP_21483091.1| proteasome-activating nucleotidase [Haloferax volcanii DS2]
gi|445571745|gb|ELY26288.1| proteasome-activating nucleotidase [Haloferax volcanii DS2]
Length = 435
Score = 47.4 bits (111), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 47/176 (26%), Positives = 79/176 (44%), Gaps = 17/176 (9%)
Query: 64 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 123
++G G GK+ + V + + I M+ EL GE AKL+R + ++ ++ +
Sbjct: 218 LYGPPGTGKTMLAKAVANQTNASFIKMAGSELVHKFIGEGAKLVRDLF----EVARENEP 273
Query: 124 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 183
+ I+++DA A + T T + V T+M + L M +E + II
Sbjct: 274 AVIFIDEIDAIASKR--TDSKTSGDAEVQRTMMQL--------LAEMDGFDERGNIRIIA 323
Query: 184 TGNDFSTLYAPLIRDGRMEKFYWAPT-REDRIGVCKGIF-RNDNVADD-DIVKLVD 236
N F L ++R GR ++ P ED + I R NV+DD D V+L +
Sbjct: 324 ATNRFDMLDPAILRPGRFDRLIEVPKPNEDGREIIFQIHTRKMNVSDDVDFVELAE 379
>gi|365986659|ref|XP_003670161.1| hypothetical protein NDAI_0E01020 [Naumovozyma dairenensis CBS 421]
gi|343768931|emb|CCD24918.1| hypothetical protein NDAI_0E01020 [Naumovozyma dairenensis CBS 421]
Length = 443
Score = 47.4 bits (111), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 42/153 (27%), Positives = 73/153 (47%), Gaps = 14/153 (9%)
Query: 56 IKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 115
IK P + ++G G GK+ + V A +G N I A + GE A++IR+ + A
Sbjct: 218 IKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVDKYIGESARIIREMFAYA- 276
Query: 116 DIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEE 175
K+ + C + ++++DA GR ++ T ++ + TLM + Q+ G N +
Sbjct: 277 ---KEHEPCIIFMDEVDAIGGRR--FSEGTSADREIQRTLMEL-----LTQMDGFDNLGQ 326
Query: 176 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAP 208
II+ N TL L+R GR+++ P
Sbjct: 327 T---KIIMATNRPDTLDPALLRPGRLDRKIEIP 356
>gi|195432950|ref|XP_002064478.1| GK23803 [Drosophila willistoni]
gi|194160563|gb|EDW75464.1| GK23803 [Drosophila willistoni]
Length = 397
Score = 47.4 bits (111), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 46/186 (24%), Positives = 88/186 (47%), Gaps = 20/186 (10%)
Query: 64 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 123
++G G GK+ V +++ N + + + + GE A+LIR+ + A D +
Sbjct: 180 LYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIREMFNYARD----HQP 235
Query: 124 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 183
C + ++++DA GR ++ T ++ + TLM + + Q+ G + +V +I+
Sbjct: 236 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGF---DSLGQVKMIM 285
Query: 184 TGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCK----GIFRNDNVADDDIVKLVDT 237
N TL L+R GR+++ P E R+ + K I ++ + + IVKL D
Sbjct: 286 ATNRPDTLDPALLRPGRLDRKIEIPLPNEEARLEILKIHALIIAKHGEIDYEAIVKLSDN 345
Query: 238 FPGQSI 243
F G +
Sbjct: 346 FNGADL 351
>gi|66359630|ref|XP_626993.1| 26S proteasome regulatory subunit S10b like AAA+ ATpase
[Cryptosporidium parvum Iowa II]
gi|46228795|gb|EAK89665.1| 26S proteasome regulatory subunit S10b like AAA+ ATpase
[Cryptosporidium parvum Iowa II]
Length = 406
Score = 47.4 bits (111), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 49/191 (25%), Positives = 86/191 (45%), Gaps = 20/191 (10%)
Query: 56 IKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 115
IK P + ++G G GK+ + + M N + + A + GE A++IR+ + A
Sbjct: 181 IKTPKGVLLYGPPGTGKTLLARAMASSMNCNFMKVVASAIVDKYIGESARVIREMFGYAK 240
Query: 116 DIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEE 175
D + C + ++++DA G+ +Q T ++ + TLM + + QL G +E
Sbjct: 241 D----HQPCVIFMDEIDAIGGKR--FSQGTSADREIQRTLMELLN-----QLDGF---DE 286
Query: 176 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCK----GIFRNDNVADD 229
V II+ N L L+R GR+++ P R+ + K + + + D
Sbjct: 287 LGAVKIIMATNRPDVLDPALLRPGRLDRKVEIPLPNETSRVEILKIHSSKLAKQGEIDFD 346
Query: 230 DIVKLVDTFPG 240
I KL D F G
Sbjct: 347 AICKLCDGFNG 357
>gi|67603252|ref|XP_666536.1| 26S proteasome regulatory subunit [Cryptosporidium hominis TU502]
gi|54657551|gb|EAL36305.1| 26S proteasome regulatory subunit [Cryptosporidium hominis]
Length = 391
Score = 47.4 bits (111), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 49/191 (25%), Positives = 86/191 (45%), Gaps = 20/191 (10%)
Query: 56 IKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 115
IK P + ++G G GK+ + + M N + + A + GE A++IR+ + A
Sbjct: 166 IKTPKGVLLYGPPGTGKTLLARAMASSMNCNFMKVVASAIVDKYIGESARVIREMFGYAK 225
Query: 116 DIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEE 175
D + C + ++++DA G+ +Q T ++ + TLM + + QL G +E
Sbjct: 226 D----HQPCVIFMDEIDAIGGKR--FSQGTSADREIQRTLMELLN-----QLDGF---DE 271
Query: 176 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCK----GIFRNDNVADD 229
V II+ N L L+R GR+++ P R+ + K + + + D
Sbjct: 272 LGAVKIIMATNRPDVLDPALLRPGRLDRKVEIPLPNETSRVEILKIHSSKLAKQGEIDFD 331
Query: 230 DIVKLVDTFPG 240
I KL D F G
Sbjct: 332 AICKLCDGFNG 342
>gi|448607714|ref|ZP_21659667.1| proteasome-activating nucleotidase [Haloferax sulfurifontis ATCC
BAA-897]
gi|445737651|gb|ELZ89183.1| proteasome-activating nucleotidase [Haloferax sulfurifontis ATCC
BAA-897]
Length = 412
Score = 47.4 bits (111), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 53/223 (23%), Positives = 93/223 (41%), Gaps = 20/223 (8%)
Query: 64 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 123
++G G GK+ + V + + I M+ EL GE A+L+R ++ AA + +
Sbjct: 191 LYGPPGTGKTMLAKAVANETNASFIKMAGSELVQKFIGEGARLVRDLFKLAA----EREP 246
Query: 124 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 183
+ I+++DA A + T T + V T+M + L M ++ + II
Sbjct: 247 VVIFIDEIDAVASKR--TDSKTSGDAEVQRTMMQL--------LSEMDGFDDRGDIRIIA 296
Query: 184 TGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCKGIFRNDNVAD----DDIVKLVDT 237
N F L ++R GR ++ P E R + R+ NVAD D + + +D
Sbjct: 297 ATNRFDMLDEAILRPGRFDRLIEVPKPAVEGRRRILDIHTRDMNVADDVDLDALAEELDD 356
Query: 238 FPGQSIDFFGALRARVYDDEVRKWISGVGVGSIGKSLVNSKEA 280
+ G I E R ++G + + L N +E+
Sbjct: 357 YSGADIASLTTEAGMFAIREGRTEVTGADFDAAHEKLSNVEES 399
>gi|256048950|ref|XP_002569488.1| 26S protease regulatory subunit [Schistosoma mansoni]
gi|353231858|emb|CCD79213.1| putative 26s protease regulatory subunit [Schistosoma mansoni]
Length = 431
Score = 47.4 bits (111), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 49/186 (26%), Positives = 83/186 (44%), Gaps = 25/186 (13%)
Query: 64 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRY---REAADIIKK 120
++G G GK+ V I +S EL GE A+++R+ + RE A I
Sbjct: 212 LYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGARMVRELFVMAREHAPSI-- 269
Query: 121 GKMCCLMINDLDA-GAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRV 179
+ ++++D+ G+ R+ T Q L+N QL G K+ +
Sbjct: 270 -----IFMDEVDSIGSTRLESGTGGDSEVQRTMLELLN--------QLDGFEPKQN---I 313
Query: 180 PIIVTGNDFSTLYAPLIRDGRMEKF--YWAPTREDRIGVCKGIFRNDNVADD-DIVKLVD 236
+I+ N L + L+R GR+++ + AP E R+ + K R N+ D D+ KL +
Sbjct: 314 KVIMATNRIDILDSALLRPGRIDRKIEFPAPNEEARLDILKIHSRKMNLTRDIDLRKLAE 373
Query: 237 TFPGQS 242
+ PG S
Sbjct: 374 SMPGAS 379
>gi|1526426|dbj|BAA11338.1| proteasome subunit p42 [Homo sapiens]
Length = 389
Score = 47.4 bits (111), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 45/186 (24%), Positives = 87/186 (46%), Gaps = 20/186 (10%)
Query: 64 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 123
++G G GK+ V +++ N + + + + GE A+LIR+ + A D +
Sbjct: 172 LYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIREMFNYARD----HQP 227
Query: 124 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 183
C + ++++DA GR ++ T ++ + TLM + + Q+ G + RV + +
Sbjct: 228 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGF---DTLHRVKMTM 277
Query: 184 TGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCK----GIFRNDNVADDDIVKLVDT 237
N TL L+R GR+++ P + R+ + K I ++ + + IVKL D
Sbjct: 278 ATNRPDTLDPALLRPGRLDRKIHIDLPNEQARLDILKIHAGPITKHGEIDYEAIVKLSDG 337
Query: 238 FPGQSI 243
F G +
Sbjct: 338 FNGADL 343
>gi|70941981|ref|XP_741212.1| 26S proteasome regulatory subunit 7 [Plasmodium chabaudi chabaudi]
gi|56519448|emb|CAH83988.1| 26S proteasome regulatory subunit 7, putative [Plasmodium chabaudi
chabaudi]
Length = 295
Score = 47.4 bits (111), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 41/157 (26%), Positives = 72/157 (45%), Gaps = 16/157 (10%)
Query: 64 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 123
++G G GK+ + + I + EL GE A+L+R+ ++ A K K
Sbjct: 76 LYGPPGTGKTLTARAIANRTDACFICVIGSELVQKYVGEGARLVRELFQMA----KSKKA 131
Query: 124 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 183
C L I+++DA G G + + + V T++ I + QL G N+ + +I+
Sbjct: 132 CILFIDEVDAIGGSRGDESAH--GDHEVQRTMLEIVN-----QLDGFDNRGN---IKVIM 181
Query: 184 TGNDFSTLYAPLIRDGRMEKF--YWAPTREDRIGVCK 218
N TL + L+R GR+++ + P E R + K
Sbjct: 182 ATNRPDTLDSALVRPGRIDRKIEFSLPDLEGRTHIFK 218
>gi|224080385|ref|XP_002306121.1| predicted protein [Populus trichocarpa]
gi|222849085|gb|EEE86632.1| predicted protein [Populus trichocarpa]
Length = 399
Score = 47.4 bits (111), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 46/194 (23%), Positives = 93/194 (47%), Gaps = 20/194 (10%)
Query: 56 IKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 115
IK P + ++G G GK+ + + + N + + + + GE A+LIR+ + A
Sbjct: 170 IKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYAR 229
Query: 116 DIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEE 175
D + C + ++++DA GR ++ T ++ + TLM + + QL G ++
Sbjct: 230 D----HQPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QLDGF---DQ 275
Query: 176 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCK----GIFRNDNVADD 229
+V +I+ N L L+R GR+++ P + R+ + K GI ++ ++ +
Sbjct: 276 LGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGDIDYE 335
Query: 230 DIVKLVDTFPGQSI 243
+VKL + F G +
Sbjct: 336 AVVKLAEGFNGADL 349
>gi|448620265|ref|ZP_21667613.1| proteasome-activating nucleotidase [Haloferax denitrificans ATCC
35960]
gi|445757053|gb|EMA08409.1| proteasome-activating nucleotidase [Haloferax denitrificans ATCC
35960]
Length = 412
Score = 47.4 bits (111), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 53/223 (23%), Positives = 93/223 (41%), Gaps = 20/223 (8%)
Query: 64 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 123
++G G GK+ + V + + I M+ EL GE A+L+R ++ AA + +
Sbjct: 191 LYGPPGTGKTMLAKAVANETNASFIKMAGSELVQKFIGEGARLVRDLFKLAA----EREP 246
Query: 124 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 183
+ I+++DA A + T T + V T+M + L M ++ + II
Sbjct: 247 VVIFIDEIDAVASKR--TDSKTSGDAEVQRTMMQL--------LSEMDGFDDRGDIRIIA 296
Query: 184 TGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCKGIFRNDNVAD----DDIVKLVDT 237
N F L ++R GR ++ P E R + R+ NVAD D + + +D
Sbjct: 297 ATNRFDMLDEAILRPGRFDRLIEVPKPAVEGRRRILDIHTRDMNVADDVDLDALAEELDD 356
Query: 238 FPGQSIDFFGALRARVYDDEVRKWISGVGVGSIGKSLVNSKEA 280
+ G I E R ++G + + L N +E+
Sbjct: 357 YSGADIASLTTEAGMFAIREGRTEVTGADFDAAHEKLSNVEES 399
>gi|224105337|ref|XP_002313775.1| predicted protein [Populus trichocarpa]
gi|222850183|gb|EEE87730.1| predicted protein [Populus trichocarpa]
Length = 392
Score = 47.4 bits (111), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 46/194 (23%), Positives = 93/194 (47%), Gaps = 20/194 (10%)
Query: 56 IKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 115
IK P + ++G G GK+ + + + N + + + + GE A+LIR+ + A
Sbjct: 163 IKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYAR 222
Query: 116 DIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEE 175
D + C + ++++DA GR ++ T ++ + TLM + + QL G ++
Sbjct: 223 D----HQPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QLDGF---DQ 268
Query: 176 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCK----GIFRNDNVADD 229
+V +I+ N L L+R GR+++ P + R+ + K GI ++ ++ +
Sbjct: 269 LGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGDIDYE 328
Query: 230 DIVKLVDTFPGQSI 243
+VKL + F G +
Sbjct: 329 AVVKLAEGFNGADL 342
>gi|358370935|dbj|GAA87545.1| AAA family ATPase/60S ribosome export protein Rix7 [Aspergillus
kawachii IFO 4308]
Length = 736
Score = 47.4 bits (111), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 51/197 (25%), Positives = 87/197 (44%), Gaps = 20/197 (10%)
Query: 55 NIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREA 114
N++ P + + G G GK+ A++G+ I +SA + SG +GE K +R+ + EA
Sbjct: 199 NVQPPRGVLLHGPPGCGKTMIANAFAAELGVPFISISAPSVISGMSGESEKALREYFEEA 258
Query: 115 ADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKE 174
K+ C + I+++DA + + Q + ++V L TC+ + +
Sbjct: 259 ----KRIAPCLIFIDEIDAITPKR-ESAQREMEKRIVAQLL-------TCMDDLALEKTD 306
Query: 175 ENPRVPIIVTGNDFSTLYAPLIRDGRMEKF--YWAPTREDRIGVCKGIFRNDNVADD-DI 231
P V ++ N +L A L R GR +K P+ R + + + R + DD D
Sbjct: 307 GKP-VIVLAATNRPDSLDAALRRGGRFDKEINMTVPSEPVREQILRALTRKMRLVDDLDF 365
Query: 232 VKLVDTFPGQSIDFFGA 248
L PG F GA
Sbjct: 366 KTLAKRTPG----FVGA 378
Score = 42.7 bits (99), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 46/200 (23%), Positives = 85/200 (42%), Gaps = 19/200 (9%)
Query: 56 IKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 115
I P + +WG G GK+ + V + N I + EL + GE + +RQ + A
Sbjct: 507 ITAPTGVLLWGPPGCGKTLLAKAVANESRANFISVKGPELLNKFVGESERAVRQVFVRAR 566
Query: 116 DIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEE 175
+ C + ++LDA R T + ++VN L + + Q G+Y
Sbjct: 567 SSVP----CVIFFDELDALVPRRDDTLS-EASARVVNTLLTELDGLGSSRQ--GLY---- 615
Query: 176 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCKGIFRNDNVA-DDDIV 232
+I N + ++R GR+E + P+ +R+ + + + RN + ++D+
Sbjct: 616 -----VIAATNRPDIIDPAMLRPGRLETLLFVNLPSPLERVEILQTLVRNLPIEFNEDLR 670
Query: 233 KLVDTFPGQSIDFFGALRAR 252
+L + G S G+L R
Sbjct: 671 RLAEECEGFSGADLGSLLRR 690
>gi|337283526|ref|YP_004623000.1| cell division control protein [Pyrococcus yayanosii CH1]
gi|334899460|gb|AEH23728.1| cell division control protein [Pyrococcus yayanosii CH1]
Length = 836
Score = 47.4 bits (111), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 43/168 (25%), Positives = 71/168 (42%), Gaps = 18/168 (10%)
Query: 64 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 123
++G G GK+ + V + N I + E+ S GE K IR+ +R+A ++
Sbjct: 584 LYGPPGTGKTLLAKAVATESQANFIAIRGPEVLSKWVGESEKRIREIFRKA----RQAAP 639
Query: 124 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 183
+ I+++DA A G V ++++N L M EEN V +I
Sbjct: 640 AIIFIDEIDAIAPARGAVEGERVTDRLINQLLTE------------MDGIEENSGVVVIA 687
Query: 184 TGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCKGIFRNDNVADD 229
N L L+R GR ++ AP R+ + + RN +A D
Sbjct: 688 ATNRPDILDPALLRPGRFDRLILVPAPDERARLEIFRVHTRNMPLAKD 735
>gi|321461635|gb|EFX72665.1| hypothetical protein DAPPUDRAFT_308117 [Daphnia pulex]
Length = 389
Score = 47.4 bits (111), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 44/186 (23%), Positives = 90/186 (48%), Gaps = 20/186 (10%)
Query: 64 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 123
++G G GK+ V +++ N + + + + GE A+LIR+ + A D +
Sbjct: 172 LYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIREMFNYARD----HQP 227
Query: 124 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 183
C + ++++DA GR ++ T ++ + TLM + + Q+ G + +V +I+
Sbjct: 228 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGF---DSLGQVKMIM 277
Query: 184 TGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCK----GIFRNDNVADDDIVKLVDT 237
N TL L+R GR+++ P + R+ + K I ++ ++ + +VKL D+
Sbjct: 278 ATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLEILKIHAGPIAKHGDIDYEAVVKLSDS 337
Query: 238 FPGQSI 243
F G +
Sbjct: 338 FNGADL 343
>gi|213404048|ref|XP_002172796.1| 19S proteasome regulatory subunit Rpt5 [Schizosaccharomyces
japonicus yFS275]
gi|212000843|gb|EEB06503.1| 19S proteasome regulatory subunit Rpt5 [Schizosaccharomyces
japonicus yFS275]
Length = 439
Score = 47.4 bits (111), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 47/177 (26%), Positives = 80/177 (45%), Gaps = 18/177 (10%)
Query: 56 IKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 115
IK P ++G G GK+ A+ + ++A +L G+ AKL+ R+A
Sbjct: 217 IKPPKGALMYGPPGTGKTLLARACAAQSNATFLKLAAPQLVQMFIGDGAKLV----RDAF 272
Query: 116 DIIKKGKMCCLMINDLDA-GAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKE 174
+ K+ + I++LDA G R ++ V T++ + + QL G +
Sbjct: 273 ALAKEKSPAIIFIDELDAIGTKRFDSE---KAGDREVQRTMLELLN-----QLDGFSS-- 322
Query: 175 ENPRVPIIVTGNDFSTLYAPLIRDGRMEKF--YWAPTREDRIGVCKGIFRNDNVADD 229
+ RV +I N TL L+R GR+++ + P E R+G+ + R VADD
Sbjct: 323 -DDRVKVIAATNRVDTLDPALLRSGRLDRKLEFPLPNEEARVGILRIHSRKMTVADD 378
>gi|68076831|ref|XP_680335.1| 26S proteasome regulatory subunit 7 [Plasmodium berghei strain
ANKA]
gi|56501247|emb|CAH95167.1| 26S proteasome regulatory subunit 7, putative [Plasmodium berghei]
Length = 420
Score = 47.4 bits (111), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 41/157 (26%), Positives = 72/157 (45%), Gaps = 16/157 (10%)
Query: 64 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 123
++G G GK+ + + I + EL GE A+L+R+ ++ A K K
Sbjct: 201 LYGPPGTGKTLTARAIANRTDACFICVIGSELVQKYVGEGARLVRELFQMA----KSKKA 256
Query: 124 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 183
C L I+++DA G G + + + V T++ I + QL G N+ + +I+
Sbjct: 257 CILFIDEVDAIGGSRGDESAH--GDHEVQRTMLEIVN-----QLDGFDNRGN---IKVIM 306
Query: 184 TGNDFSTLYAPLIRDGRMEKF--YWAPTREDRIGVCK 218
N TL + L+R GR+++ + P E R + K
Sbjct: 307 ATNRPDTLDSALVRPGRIDRKIEFSLPDLEGRTHIFK 343
>gi|383622082|ref|ZP_09948488.1| proteasome-activating nucleotidase [Halobiforma lacisalsi AJ5]
gi|448698594|ref|ZP_21699061.1| proteasome-activating nucleotidase [Halobiforma lacisalsi AJ5]
gi|445780702|gb|EMA31579.1| proteasome-activating nucleotidase [Halobiforma lacisalsi AJ5]
Length = 405
Score = 47.4 bits (111), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 37/145 (25%), Positives = 63/145 (43%), Gaps = 14/145 (9%)
Query: 64 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 123
++G G GK+ + V + I M+ EL GE AKL+R ++ + ++ +
Sbjct: 188 LYGPPGTGKTMLAKAVANQTDATFIKMAGSELVHKFIGEGAKLVRDLFK----VAREHEP 243
Query: 124 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 183
+ I+++DA A + T T + V T+M + L M EE + II
Sbjct: 244 AVIFIDEIDAIAAKR--TESKTSGDAEVQRTMMQL--------LSEMDGFEERGEIRIIA 293
Query: 184 TGNDFSTLYAPLIRDGRMEKFYWAP 208
N F L ++R GR ++ P
Sbjct: 294 ATNRFDMLDRAILRPGRFDRLIEVP 318
>gi|315039481|ref|XP_003169116.1| ribosome biogenesis ATPase RIX7 [Arthroderma gypseum CBS 118893]
gi|311337537|gb|EFQ96739.1| ribosome biogenesis ATPase RIX7 [Arthroderma gypseum CBS 118893]
Length = 743
Score = 47.4 bits (111), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 46/191 (24%), Positives = 87/191 (45%), Gaps = 16/191 (8%)
Query: 42 LVVHITK-NFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNA 100
+V+ +T+ S N++ P + + G G GK+ A++G+ I +SA + SG +
Sbjct: 193 IVLPMTRPQIFSASNVQPPRGVLLHGPPGCGKTMIANAFAAELGVPFIAISAPSIISGMS 252
Query: 101 GEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIAD 160
GE K +R + EA ++ C + ++++DA + + Q + ++V L
Sbjct: 253 GESEKALRDHFEEA----RRVAPCLIFMDEIDAITPKR-ESAQREMEKRIVAQLL----- 302
Query: 161 NPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKF--YWAPTREDRIGVCK 218
TC+ + + P V ++ N +L L R GR +K P+ R + +
Sbjct: 303 --TCMDDLALAKTDGKP-VIVLAATNRPDSLDPALRRGGRFDKEINLTVPSEPVREQILR 359
Query: 219 GIFRNDNVADD 229
+ R N+ADD
Sbjct: 360 ALTREMNLADD 370
Score = 43.9 bits (102), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 47/200 (23%), Positives = 84/200 (42%), Gaps = 19/200 (9%)
Query: 56 IKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 115
I P + +WG G GK+ + V + N I + EL + GE + +RQ + A
Sbjct: 513 ISAPTGVLLWGPPGCGKTLLAKAVANESRANFISIKGPELLNKYVGESERAVRQVFSRAR 572
Query: 116 DIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEE 175
+ C + ++LDA R T + ++VN L +L G+ +
Sbjct: 573 SSVP----CVIFFDELDALVPRRDDTMS-EASARVVNTLL---------TELDGLGSSRN 618
Query: 176 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCKGIFRNDNVA-DDDIV 232
+ +I N + ++R GR+E + P R++R V + + R + D++V
Sbjct: 619 G--IYVIAATNRPDIIDPAMLRPGRLETLLFVNLPGRDERAEVLRTLIRKLPIEMTDELV 676
Query: 233 KLVDTFPGQSIDFFGALRAR 252
+L + G S G+L R
Sbjct: 677 ELARSCEGFSGADLGSLLRR 696
>gi|307196021|gb|EFN77746.1| Peroxisome biogenesis factor 1 [Harpegnathos saltator]
Length = 929
Score = 47.4 bits (111), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 47/188 (25%), Positives = 81/188 (43%), Gaps = 24/188 (12%)
Query: 64 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 123
++G G GK+ + + + G+N I + EL S G + +R + A ++ K
Sbjct: 679 LYGMPGTGKTMLAKAIAGECGVNLISIKGPELLSKYIGVSEESVRNVFERA----RRAKP 734
Query: 124 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 183
C L ++ D+ A R G V +++VN L QL G+ ++E V I+
Sbjct: 735 CVLFFDEFDSLAPRRGHDNT-GVTDRVVNQLL---------TQLDGVEDREG---VAIVA 781
Query: 184 TGNDFSTLYAPLIRDGRMEKFYWAP------TREDRIGVCKGIFRNDNVAD-DDIVKLVD 236
+ L L+R GR++K P RE +CK + D +++ +L D
Sbjct: 782 ASSRPDMLDPALLRPGRLDKCLHCPLPNETERREIFTELCKSQNVDSATLDLEELARLSD 841
Query: 237 TFPGQSID 244
F G I+
Sbjct: 842 GFTGADIN 849
>gi|146416949|ref|XP_001484444.1| conserved hypothetical protein [Meyerozyma guilliermondii ATCC
6260]
Length = 418
Score = 47.4 bits (111), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 46/179 (25%), Positives = 82/179 (45%), Gaps = 16/179 (8%)
Query: 27 NTIDGLYIAPAFMDKLVVHITKN--FMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMG 84
NTI GL + +++ KN + IK+P + ++G G GK+ + V A +G
Sbjct: 162 NTIGGLTEQVRELREVIELPLKNPELFTRVGIKLPKGVLLYGPPGTGKTLLAKAVAATIG 221
Query: 85 INPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQY 144
N I A + GE A+LIR+ + A K+ C + ++++DA GR ++
Sbjct: 222 ANFIFSPASAIVDKYIGESARLIREMFAYA----KEHAPCIIFMDEVDAIGGRR--FSEG 275
Query: 145 TVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEK 203
T ++ + TLM + + G + +I+ N TL L+R GR+++
Sbjct: 276 TSADREIQRTLMELLNQMDGFDTLG--------QTKVIMATNRPDTLDPALLRAGRLDR 326
>gi|366989615|ref|XP_003674575.1| hypothetical protein NCAS_0B01150 [Naumovozyma castellii CBS 4309]
gi|342300439|emb|CCC68199.1| hypothetical protein NCAS_0B01150 [Naumovozyma castellii CBS 4309]
Length = 426
Score = 47.4 bits (111), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 42/153 (27%), Positives = 73/153 (47%), Gaps = 14/153 (9%)
Query: 56 IKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 115
IK P + ++G G GK+ + V A +G N I A + GE A++IR+ + A
Sbjct: 201 IKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVDKYIGESARIIREMFAYA- 259
Query: 116 DIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEE 175
K+ + C + ++++DA GR ++ T ++ + TLM + Q+ G N +
Sbjct: 260 ---KEHEPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMEL-----LSQMDGFDNLGQ 309
Query: 176 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAP 208
II+ N TL L+R GR+++ P
Sbjct: 310 ---TKIIMATNRPDTLDPALLRPGRLDRKVEIP 339
>gi|283046720|ref|NP_001164306.1| peroxisome biogenesis factor 1 [Danio rerio]
gi|154200022|gb|ABS71030.1| peroxin 1 [Danio rerio]
Length = 1237
Score = 47.4 bits (111), Expect = 0.012, Method: Composition-based stats.
Identities = 58/220 (26%), Positives = 100/220 (45%), Gaps = 24/220 (10%)
Query: 50 FMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQ 109
F SLP + +L ++G G GK+ V + G+N I + EL S G + +R
Sbjct: 822 FSSLPLRQCSGVL-LYGAPGTGKTLLAGAVAKESGMNFISIKGPELLSKYIGASEQAVRD 880
Query: 110 RYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPG 169
++ A ++ K C L ++ D+ A R G V +++VN L QL G
Sbjct: 881 VFQRA----QQAKPCILFFDEFDSLAPRRGHDNT-GVTDRVVNQLL---------TQLDG 926
Query: 170 MYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCKGIFRNDNVA 227
+ E V ++ + + L+R GR++K + P RE R+ + + + + +A
Sbjct: 927 V---EGLTGVYVLAASSRPDLIDPALLRPGRLDKSLYCPPPDREARLEILRALTHSVPLA 983
Query: 228 DDDIVKLVDTFPGQSIDFFGA-LRARVYDDEVRKWISGVG 266
D V L D G + F GA L+A +Y+ ++ S +G
Sbjct: 984 AD--VDL-DQIAGATELFTGADLKALLYNAQLEAIHSSLG 1020
>gi|225021604|ref|ZP_03710796.1| hypothetical protein CORMATOL_01626 [Corynebacterium matruchotii
ATCC 33806]
gi|305680771|ref|ZP_07403578.1| ATPase, AAA family [Corynebacterium matruchotii ATCC 14266]
gi|224945595|gb|EEG26804.1| hypothetical protein CORMATOL_01626 [Corynebacterium matruchotii
ATCC 33806]
gi|305658976|gb|EFM48476.1| ATPase, AAA family [Corynebacterium matruchotii ATCC 14266]
Length = 516
Score = 47.4 bits (111), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 49/195 (25%), Positives = 80/195 (41%), Gaps = 44/195 (22%)
Query: 66 GGKGQGKSF-------QCELVFAKMGINPIM-MSAGELESGNAGEPAKLIRQRYREAADI 117
G G GKS Q EL ++ + I+ M GE E Q REA +
Sbjct: 273 GVPGCGKSLSAKNIAVQWELPLYRLDMGAILGMYVGESE------------QNLREALET 320
Query: 118 IKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENP 177
++ C L I++++ G G+ +V +++ L + +E
Sbjct: 321 AERMAPCVLWIDEIEKGLA--TGSGDSSVTKRLIGQFLF--------------WLQESQA 364
Query: 178 RVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PT---REDRIGVCKGIFRNDNVADDDIV 232
+V I+ T ND STL L+R GR ++ ++ PT R D I +C + N + +
Sbjct: 365 KVFIVATANDVSTLPPELLRKGRFDEIFFVDLPTETERTDIIDLCFWKYTNHAIPSHLVA 424
Query: 233 KLVDT---FPGQSID 244
+L + F G ID
Sbjct: 425 ELAEVSEGFAGSDID 439
>gi|15920578|ref|NP_376247.1| hypothetical protein ST0376 [Sulfolobus tokodaii str. 7]
gi|342306167|dbj|BAK54256.1| ATPase [Sulfolobus tokodaii str. 7]
Length = 747
Score = 47.4 bits (111), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 47/168 (27%), Positives = 75/168 (44%), Gaps = 18/168 (10%)
Query: 64 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 123
++G G GK+ + V + G N I + E+ S GE K IR+ +R+A ++
Sbjct: 493 LFGPPGTGKTMLAKAVATESGANFIAVRGPEILSKWVGESEKAIREIFRKA----RQAAP 548
Query: 124 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 183
+ +++DA A G TT V ++VN L A+ V L NK V +I
Sbjct: 549 TIIFFDEIDAIAPMRGLTTDSGVTERIVNQLL---AEMDGIVPL----NK-----VVVIA 596
Query: 184 TGNDFSTLYAPLIRDGRMEKFYWAPT--REDRIGVCKGIFRNDNVADD 229
N L L+R GR ++ + P + R + K RN +A+D
Sbjct: 597 ATNRPDILDPALLRPGRFDRLIYVPPPDKRARAEILKVHTRNVPLAED 644
>gi|255538752|ref|XP_002510441.1| 26S protease regulatory subunit S10b, putative [Ricinus communis]
gi|223551142|gb|EEF52628.1| 26S protease regulatory subunit S10b, putative [Ricinus communis]
Length = 399
Score = 47.4 bits (111), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 46/194 (23%), Positives = 93/194 (47%), Gaps = 20/194 (10%)
Query: 56 IKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 115
IK P + ++G G GK+ + + + N + + + + GE A+LIR+ + A
Sbjct: 170 IKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYAR 229
Query: 116 DIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEE 175
D + C + ++++DA GR ++ T ++ + TLM + + QL G ++
Sbjct: 230 D----HQPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QLDGF---DQ 275
Query: 176 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCK----GIFRNDNVADD 229
+V +I+ N L L+R GR+++ P + R+ + K GI ++ ++ +
Sbjct: 276 LGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGDIDYE 335
Query: 230 DIVKLVDTFPGQSI 243
+VKL + F G +
Sbjct: 336 AVVKLAEGFNGADL 349
>gi|242008303|ref|XP_002424946.1| 26S protease regulatory subunit S10B, putative [Pediculus humanus
corporis]
gi|212508560|gb|EEB12208.1| 26S protease regulatory subunit S10B, putative [Pediculus humanus
corporis]
Length = 395
Score = 47.4 bits (111), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 46/186 (24%), Positives = 88/186 (47%), Gaps = 20/186 (10%)
Query: 64 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 123
++G G GK+ V +++ N + + + + GE A+LIR+ + A D +
Sbjct: 178 LYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIREMFNYARD----HQP 233
Query: 124 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 183
C + ++++DA GR ++ T ++ + TLM + + Q+ G + +V II+
Sbjct: 234 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGF---DSLGQVKIIM 283
Query: 184 TGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCK----GIFRNDNVADDDIVKLVDT 237
N TL L+R GR+++ P + R+ + K I ++ + + IVKL D
Sbjct: 284 ATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLEILKIHAMPITKHGEIDYEAIVKLSDG 343
Query: 238 FPGQSI 243
F G +
Sbjct: 344 FNGADL 349
>gi|323307308|gb|EGA60588.1| Rpt4p [Saccharomyces cerevisiae FostersO]
Length = 374
Score = 47.4 bits (111), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 42/153 (27%), Positives = 73/153 (47%), Gaps = 14/153 (9%)
Query: 56 IKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 115
IK P + ++G G GK+ + V A +G N I A + GE A++IR+ + A
Sbjct: 212 IKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVDKYIGESARIIREMFAYA- 270
Query: 116 DIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEE 175
K+ + C + ++++DA GR ++ T ++ + TLM + Q+ G N +
Sbjct: 271 ---KEHEPCIIFMDEVDAIGGRR--FSEGTSADREIQRTLMEL-----LTQMDGFDNLGQ 320
Query: 176 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAP 208
II+ N TL L+R GR+++ P
Sbjct: 321 ---TKIIMATNRPDTLDPALLRPGRLDRKVEIP 350
>gi|281344564|gb|EFB20148.1| hypothetical protein PANDA_019466 [Ailuropoda melanoleuca]
Length = 389
Score = 47.4 bits (111), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 46/186 (24%), Positives = 87/186 (46%), Gaps = 20/186 (10%)
Query: 64 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 123
++G G GK+ V +++ N + + + + GE A LIR+ + A D +
Sbjct: 172 LYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESACLIREMFNYARD----HQP 227
Query: 124 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 183
C + ++++DA GR ++ T ++ + TLM + + Q+ G + RV +I+
Sbjct: 228 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGF---DTLHRVKMIM 277
Query: 184 TGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCK----GIFRNDNVADDDIVKLVDT 237
N TL L+R GR+++ P + R+ + K I ++ + + IVKL D
Sbjct: 278 ATNRPDTLDPALLRPGRLDRKIHIDLPNEQARLDILKIHAGPITKHGEIDYEAIVKLSDG 337
Query: 238 FPGQSI 243
F G +
Sbjct: 338 FNGADL 343
>gi|448328811|ref|ZP_21518117.1| proteasome-activating nucleotidase [Natrinema versiforme JCM 10478]
gi|445615115|gb|ELY68774.1| proteasome-activating nucleotidase [Natrinema versiforme JCM 10478]
Length = 410
Score = 47.4 bits (111), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 43/167 (25%), Positives = 73/167 (43%), Gaps = 16/167 (9%)
Query: 64 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 123
++G G GK+ + V + I M+ EL GE ++L+R + ++ ++ +
Sbjct: 191 LYGPPGTGKTMLAKAVANETDATFIKMAGSELVRKFIGEGSRLVRDLF----EMARERQP 246
Query: 124 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 183
+ I+++DA A R T T + V T+M + L M E + II
Sbjct: 247 AIIFIDEIDAIATRR--TESKTSGDAEVQRTMMQL--------LSEMDGFEARGEIRIIA 296
Query: 184 TGNDFSTLYAPLIRDGRMEKFYWAPT--REDRIGVCKGIFRNDNVAD 228
N F L ++R GR ++ P R+ R + + RN NVAD
Sbjct: 297 ATNRFDMLDRAILRPGRFDRLIEVPEPDRDGREQILQIHTRNMNVAD 343
>gi|225713006|gb|ACO12349.1| 26S protease regulatory subunit S10B [Lepeophtheirus salmonis]
gi|290561741|gb|ADD38268.1| 26S protease regulatory subunit S10B [Lepeophtheirus salmonis]
Length = 392
Score = 47.4 bits (111), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 44/186 (23%), Positives = 86/186 (46%), Gaps = 20/186 (10%)
Query: 64 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 123
++G G GK+ V +++ N + + + + GE A+LIR+ + A D +
Sbjct: 175 LYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIREMFNYARD----HQP 230
Query: 124 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 183
C + ++++DA GR ++ T ++ + TLM + + + G +V +I+
Sbjct: 231 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLNQMDGFDVLG--------QVKMIM 280
Query: 184 TGNDFSTLYAPLIRDGRMEKFYWAPTRED--RIGVCK----GIFRNDNVADDDIVKLVDT 237
N TL L+R GR+++ P D R+ + K I ++ + + +VKL D
Sbjct: 281 ATNRPDTLDPALLRPGRLDRKVEIPLPNDQARLEILKIHAGPITKHGEIDYEAVVKLSDG 340
Query: 238 FPGQSI 243
F G +
Sbjct: 341 FNGADL 346
>gi|195059036|ref|XP_001995550.1| GH17814 [Drosophila grimshawi]
gi|193896336|gb|EDV95202.1| GH17814 [Drosophila grimshawi]
Length = 397
Score = 47.4 bits (111), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 45/186 (24%), Positives = 88/186 (47%), Gaps = 20/186 (10%)
Query: 64 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 123
++G G GK+ V +++ N + + + + GE A+LIR+ + A D +
Sbjct: 180 LYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIREMFNYARD----HQP 235
Query: 124 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 183
C + ++++DA GR ++ T ++ + TLM + + Q+ G + +V +I+
Sbjct: 236 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGF---DSLGQVKMIM 285
Query: 184 TGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCK----GIFRNDNVADDDIVKLVDT 237
N TL L+R GR+++ P + R+ + K I ++ + + IVKL D
Sbjct: 286 ATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLEILKIHALKIAKHGEIDYEAIVKLSDN 345
Query: 238 FPGQSI 243
F G +
Sbjct: 346 FNGADL 351
>gi|448570119|ref|ZP_21639113.1| proteasome-activating nucleotidase [Haloferax lucentense DSM 14919]
gi|448599574|ref|ZP_21655377.1| proteasome-activating nucleotidase [Haloferax alexandrinus JCM
10717]
gi|445723420|gb|ELZ75062.1| proteasome-activating nucleotidase [Haloferax lucentense DSM 14919]
gi|445736247|gb|ELZ87791.1| proteasome-activating nucleotidase [Haloferax alexandrinus JCM
10717]
Length = 378
Score = 47.4 bits (111), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 44/168 (26%), Positives = 74/168 (44%), Gaps = 16/168 (9%)
Query: 64 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 123
++G G GK+ + V + + I M+ EL GE A+L+R ++ AA + +
Sbjct: 157 LYGPPGTGKTMLAKAVANETNASFIKMAGSELVQKFIGEGARLVRDLFKLAA----EREP 212
Query: 124 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 183
+ I+++DA A + T T + V T+M + L M ++ + II
Sbjct: 213 VVIFIDEIDAVASKR--TDSKTSGDAEVQRTMMQL--------LSEMDGFDDRGDIRIIA 262
Query: 184 TGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCKGIFRNDNVADD 229
N F L ++R GR ++ P E R + R+ NVADD
Sbjct: 263 ATNRFDMLDEAILRPGRFDRLIEVPKPAVEGRRHILDIHTRDMNVADD 310
>gi|169768094|ref|XP_001818518.1| hypothetical protein AOR_1_2826174 [Aspergillus oryzae RIB40]
gi|238485043|ref|XP_002373760.1| AAA family ATPase/60S ribosome export protein Rix7, putative
[Aspergillus flavus NRRL3357]
gi|83766373|dbj|BAE56516.1| unnamed protein product [Aspergillus oryzae RIB40]
gi|220701810|gb|EED58148.1| AAA family ATPase/60S ribosome export protein Rix7, putative
[Aspergillus flavus NRRL3357]
gi|391869899|gb|EIT79089.1| nuclear AAA ATPase [Aspergillus oryzae 3.042]
Length = 735
Score = 47.4 bits (111), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 45/177 (25%), Positives = 81/177 (45%), Gaps = 15/177 (8%)
Query: 55 NIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREA 114
N++ P + + G G GK+ A++G+ I +SA + SG +GE K +R+ + EA
Sbjct: 201 NVQPPRGVLLHGPPGCGKTMIANAFAAELGVPFISISAPSIVSGMSGESEKALREYFEEA 260
Query: 115 ADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKE 174
K+ C + I+++DA + + Q + ++V L TC+ + +
Sbjct: 261 ----KRIAPCLIFIDEIDAITPKR-ESAQREMEKRIVAQLL-------TCMDDLALEKTD 308
Query: 175 ENPRVPIIVTGNDFSTLYAPLIRDGRMEKF--YWAPTREDRIGVCKGIFRNDNVADD 229
P V ++ N +L A L R GR +K P+ R + + + R +ADD
Sbjct: 309 GKP-VIVLAATNRPDSLDAALRRGGRFDKEINMTVPSEPVREQILRALTRKMRLADD 364
Score = 43.9 bits (102), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 49/207 (23%), Positives = 87/207 (42%), Gaps = 19/207 (9%)
Query: 49 NFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIR 108
N + I P + +WG G GK+ + V + N I + EL + GE + +R
Sbjct: 499 NLYASVGITAPTGVLLWGPPGCGKTLLAKAVANESHANFISVKGPELLNKYVGESERAVR 558
Query: 109 QRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLP 168
Q + A + C + ++LDA R T + ++VN L +L
Sbjct: 559 QVFVRARSSVP----CVIFFDELDALVPRRDDTVS-EASARVVNTLL---------TELD 604
Query: 169 GMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCKGIFRNDNV 226
G+ + + + II N + ++R GR+E + P+ +R + + + RN V
Sbjct: 605 GLGSNRQG--IYIIAATNRPDIIDPAMLRPGRLETLLFVNLPSPLERAEILRTLVRNIPV 662
Query: 227 A-DDDIVKLVDTFPGQSIDFFGALRAR 252
+DD+ +L + G S G+L R
Sbjct: 663 DFNDDLRRLAEDCEGFSGADLGSLLRR 689
>gi|448453007|ref|ZP_21593607.1| ATPase AAA [Halorubrum litoreum JCM 13561]
gi|445808094|gb|EMA58169.1| ATPase AAA [Halorubrum litoreum JCM 13561]
Length = 751
Score = 47.4 bits (111), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 47/185 (25%), Positives = 74/185 (40%), Gaps = 23/185 (12%)
Query: 64 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQ---RYREAADIIKK 120
++G G GK+ + + G+N I ++ EL GE K +R+ R R+AA I
Sbjct: 531 LYGPPGTGKTLLARAIAGESGVNYIQVAGPELLDRYVGESEKAVRELFDRARQAAPAIIF 590
Query: 121 GKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVP 180
+ D DA G G ++ V+ + L +DNP V
Sbjct: 591 FDEIDAVATDRDAAGGDGSGVSERVVSQLLTE--LDRASDNPNLV--------------- 633
Query: 181 IIVTGNDFSTLYAPLIRDGRMEKFYWAPT--REDRIGVCKGIFRNDNVADD-DIVKLVDT 237
++ N L L+R GR+E P RE R + + R + DD D+ ++ D
Sbjct: 634 VLAATNRRDALDPALLRPGRLETHVEVPEPDREARRKILEVHTRGKPLTDDVDLERVADE 693
Query: 238 FPGQS 242
G S
Sbjct: 694 TEGYS 698
>gi|448507739|ref|ZP_21615127.1| ATPase AAA [Halorubrum distributum JCM 9100]
gi|448518711|ref|ZP_21617718.1| ATPase AAA [Halorubrum distributum JCM 10118]
gi|445698075|gb|ELZ50127.1| ATPase AAA [Halorubrum distributum JCM 9100]
gi|445704644|gb|ELZ56554.1| ATPase AAA [Halorubrum distributum JCM 10118]
Length = 751
Score = 47.4 bits (111), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 47/185 (25%), Positives = 74/185 (40%), Gaps = 23/185 (12%)
Query: 64 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQ---RYREAADIIKK 120
++G G GK+ + + G+N I ++ EL GE K +R+ R R+AA I
Sbjct: 531 LYGPPGTGKTLLARAIAGESGVNYIQVAGPELLDRYVGESEKAVRELFDRARQAAPAIIF 590
Query: 121 GKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVP 180
+ D DA G G ++ V+ + L +DNP V
Sbjct: 591 FDEIDAVATDRDAAGGDGSGVSERVVSQLLTE--LDRASDNPNLV--------------- 633
Query: 181 IIVTGNDFSTLYAPLIRDGRMEKFYWAPT--REDRIGVCKGIFRNDNVADD-DIVKLVDT 237
++ N L L+R GR+E P RE R + + R + DD D+ ++ D
Sbjct: 634 VLAATNRRDALDPALLRPGRLETHVEVPEPDREARRKILEVHTRGKPLTDDVDLERVADE 693
Query: 238 FPGQS 242
G S
Sbjct: 694 TEGYS 698
>gi|365762926|gb|EHN04458.1| Rpt4p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 379
Score = 47.4 bits (111), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 42/153 (27%), Positives = 73/153 (47%), Gaps = 14/153 (9%)
Query: 56 IKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 115
IK P + ++G G GK+ + V A +G N I A + GE A++IR+ + A
Sbjct: 212 IKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVDKYIGESARIIREMFAYA- 270
Query: 116 DIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEE 175
K+ + C + ++++DA GR ++ T ++ + TLM + Q+ G N +
Sbjct: 271 ---KEHEPCIIFMDEVDAIGGRR--FSEGTSADREIQRTLMEL-----LTQMDGFDNLGQ 320
Query: 176 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAP 208
II+ N TL L+R GR+++ P
Sbjct: 321 ---TKIIMATNRPDTLDPALLRPGRLDRKVEIP 350
>gi|254584302|ref|XP_002497719.1| ZYRO0F11946p [Zygosaccharomyces rouxii]
gi|238940612|emb|CAR28786.1| ZYRO0F11946p [Zygosaccharomyces rouxii]
Length = 444
Score = 47.4 bits (111), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 41/153 (26%), Positives = 73/153 (47%), Gaps = 14/153 (9%)
Query: 56 IKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 115
IK P + ++G G GK+ + V A +G N I A + GE A++IR+ + A
Sbjct: 219 IKSPTGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVDKYIGESARIIREMFAYA- 277
Query: 116 DIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEE 175
K+ + C + ++++DA GR ++ T ++ + TLM + Q+ G +
Sbjct: 278 ---KEHEPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMEL-----LTQMDGF---DS 324
Query: 176 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAP 208
+ II+ N TL L+R GR+++ P
Sbjct: 325 LGQTKIIMATNRPDTLDPALLRPGRLDRKIEIP 357
>gi|448545073|ref|ZP_21625816.1| proteasome-activating nucleotidase [Haloferax sp. ATCC BAA-646]
gi|448547378|ref|ZP_21626856.1| proteasome-activating nucleotidase [Haloferax sp. ATCC BAA-645]
gi|445704591|gb|ELZ56503.1| proteasome-activating nucleotidase [Haloferax sp. ATCC BAA-646]
gi|445716389|gb|ELZ68133.1| proteasome-activating nucleotidase [Haloferax sp. ATCC BAA-645]
Length = 378
Score = 47.4 bits (111), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 44/168 (26%), Positives = 74/168 (44%), Gaps = 16/168 (9%)
Query: 64 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 123
++G G GK+ + V + + I M+ EL GE A+L+R ++ AA + +
Sbjct: 157 LYGPPGTGKTMLAKAVANETNASFIKMAGSELVQKFIGEGARLVRDLFKLAA----EREP 212
Query: 124 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 183
+ I+++DA A + T T + V T+M + L M ++ + II
Sbjct: 213 VVIFIDEIDAVASKR--TDSKTSGDAEVQRTMMQL--------LSEMDGFDDRGDIRIIA 262
Query: 184 TGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCKGIFRNDNVADD 229
N F L ++R GR ++ P E R + R+ NVADD
Sbjct: 263 ATNRFDMLDEAILRPGRFDRLIEVPKPAVEGRRHILDIHTRDMNVADD 310
>gi|448425588|ref|ZP_21582918.1| ATPase AAA [Halorubrum terrestre JCM 10247]
gi|445680659|gb|ELZ33102.1| ATPase AAA [Halorubrum terrestre JCM 10247]
Length = 751
Score = 47.4 bits (111), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 47/185 (25%), Positives = 74/185 (40%), Gaps = 23/185 (12%)
Query: 64 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQ---RYREAADIIKK 120
++G G GK+ + + G+N I ++ EL GE K +R+ R R+AA I
Sbjct: 531 LYGPPGTGKTLLARAIAGESGVNYIQVAGPELLDRYVGESEKAVRELFDRARQAAPAIIF 590
Query: 121 GKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVP 180
+ D DA G G ++ V+ + L +DNP V
Sbjct: 591 FDEIDAVATDRDAAGGDGSGVSERVVSQLLTE--LDRASDNPNLV--------------- 633
Query: 181 IIVTGNDFSTLYAPLIRDGRMEKFYWAPT--REDRIGVCKGIFRNDNVADD-DIVKLVDT 237
++ N L L+R GR+E P RE R + + R + DD D+ ++ D
Sbjct: 634 VLAATNRRDALDPALLRPGRLETHVEVPEPDREARRKILEVHTRGKPLTDDVDLERVADE 693
Query: 238 FPGQS 242
G S
Sbjct: 694 TEGYS 698
>gi|89894709|ref|YP_518196.1| hypothetical protein DSY1963 [Desulfitobacterium hafniense Y51]
gi|89334157|dbj|BAE83752.1| hypothetical protein [Desulfitobacterium hafniense Y51]
Length = 491
Score = 47.4 bits (111), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 34/144 (23%), Positives = 66/144 (45%), Gaps = 13/144 (9%)
Query: 88 IMMSAGELESGNAGEPAKLIRQRYREAADIIKKGK--MCCLMINDLDAGAGRMGGTTQYT 145
+ +S E AG A +R+ +++A ++ KK K + I+++D + G +
Sbjct: 125 LAVSGSEFVEMYAGVGADRVRRLFKKARELAKKEKKDRAIIFIDEMDILGAKRGSNVSHH 184
Query: 146 VNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFY 205
+Q +N L V++ G+ N E+ P++ +I N L L+R GR ++
Sbjct: 185 EYDQTLNQLL---------VEMDGLGNSEQGPKILMIAATNRAEALDPALVRPGRFDRLV 235
Query: 206 WA--PTREDRIGVCKGIFRNDNVA 227
P +E R+ + K +N +A
Sbjct: 236 KVDLPDKEGRLAILKIHTKNKPLA 259
>gi|118486132|gb|ABK94909.1| unknown [Populus trichocarpa]
Length = 399
Score = 47.4 bits (111), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 46/194 (23%), Positives = 93/194 (47%), Gaps = 20/194 (10%)
Query: 56 IKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 115
IK P + ++G G GK+ + + + N + + + + GE A+LIR+ + A
Sbjct: 170 IKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYAR 229
Query: 116 DIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEE 175
D + C + ++++DA GR ++ T ++ + TLM + + QL G ++
Sbjct: 230 D----HQPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QLDGF---DQ 275
Query: 176 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCK----GIFRNDNVADD 229
+V +I+ N L L+R GR+++ P + R+ + K GI ++ ++ +
Sbjct: 276 LGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGDIDYE 335
Query: 230 DIVKLVDTFPGQSI 243
+VKL + F G +
Sbjct: 336 AVVKLAEGFNGADL 349
>gi|14591590|ref|NP_143672.1| cell division control [Pyrococcus horikoshii OT3]
gi|3258278|dbj|BAA30961.1| 798aa long hypothetical transitional endoplasmic reticulum ATPase
[Pyrococcus horikoshii OT3]
Length = 798
Score = 47.4 bits (111), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 46/168 (27%), Positives = 74/168 (44%), Gaps = 19/168 (11%)
Query: 64 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 123
++G G GK+ + V + N I + E+ S GE K IR+ +R+A ++
Sbjct: 558 LYGPPGTGKTLLAKAVATESEANFIAVRGPEVLSKWVGESEKNIREIFRKA----RQAAP 613
Query: 124 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 183
+ I+++DA A R GT V ++++N L M +EN V +I
Sbjct: 614 TVIFIDEIDAIAPRR-GTDVNRVTDRLINQLLTE------------MDGIQENTGVVVIA 660
Query: 184 TGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCKGIFRNDNVADD 229
N L L+R GR ++ AP E R + K R+ +ADD
Sbjct: 661 ATNRPDILDPALLRPGRFDRLILVPAPDEEARFEIFKVHTRSMPLADD 708
>gi|448688419|ref|ZP_21694252.1| cell division control protein 48 [Haloarcula japonica DSM 6131]
gi|445779480|gb|EMA30410.1| cell division control protein 48 [Haloarcula japonica DSM 6131]
Length = 757
Score = 47.4 bits (111), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 60/248 (24%), Positives = 106/248 (42%), Gaps = 32/248 (12%)
Query: 64 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 123
++G G GK+ + V + N I + EL + GE K +R+ + +A ++
Sbjct: 505 MYGPPGTGKTLLAKAVANEAQSNFISVKGPELLNKFVGESEKGVREVFSKA----RENAP 560
Query: 124 CCLMINDLDAGAG-RMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPII 182
+ +++D+ AG R GGTT V ++V+ L +L G+ EE V ++
Sbjct: 561 TVVFFDEIDSIAGERGGGTTDSGVGERVVSQLL---------TELDGI---EEMENVVVV 608
Query: 183 VTGNDFSTLYAPLIRDGRMEKFYWAPT--REDRIGVCKGIFRNDNVAD----DDIVKLVD 236
T N + L+R GR+++ P E R + + R+ +AD D++ D
Sbjct: 609 ATTNRPDLIDDALLRPGRLDRHVHVPVPDEEARRAIFQVHTRSKPLADGVDLDELASRTD 668
Query: 237 TFPGQSIDFFGALRARVYDDEVRKWISGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLE 296
+ G I+ A+ R++I+ V IG S+ N + FE L E
Sbjct: 669 GYVGADIE---AVAREASMAATREFINSVDPEEIGDSVSNVRVTMDHFEH------ALSE 719
Query: 297 YGNMIVQE 304
G + +E
Sbjct: 720 VGPSVTEE 727
>gi|77993704|gb|ABB13465.1| 26S proteasome subunit RPT4 [Schistosoma mansoni]
Length = 368
Score = 47.4 bits (111), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 46/186 (24%), Positives = 89/186 (47%), Gaps = 20/186 (10%)
Query: 64 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 123
++G G GK+ V +++ +N + + + + GE A+LIR+ + A D +
Sbjct: 178 LYGPPGTGKTLLARAVASQLDVNFLKVVSSGIVDKYIGESARLIREMFNYARD----HQP 233
Query: 124 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 183
C + ++++DA GR T+ T ++ + TLM + + Q+ G + +V +I+
Sbjct: 234 CIIFMDEIDAIGGRR--FTEGTSADREIQRTLMELLN-----QMDGF---DALGQVKMIM 283
Query: 184 TGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCK----GIFRNDNVADDDIVKLVDT 237
N TL L+R GR+++ P + R+ V K I ++ + + +VKL D
Sbjct: 284 ATNRPDTLDPALLRPGRLDRKIEIPLPNEQARMDVLKIHAAPIAKHGEIDWEAVVKLSDG 343
Query: 238 FPGQSI 243
F G +
Sbjct: 344 FNGADL 349
>gi|256073723|ref|XP_002573178.1| 26S protease regulatory subunit S10b [Schistosoma mansoni]
gi|360045512|emb|CCD83060.1| putative 26s protease regulatory subunit S10b [Schistosoma mansoni]
Length = 395
Score = 47.4 bits (111), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 46/186 (24%), Positives = 89/186 (47%), Gaps = 20/186 (10%)
Query: 64 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 123
++G G GK+ V +++ +N + + + + GE A+LIR+ + A D +
Sbjct: 178 LYGPPGTGKTLLARAVASQLDVNFLKVVSSGIVDKYIGESARLIREMFNYARD----HQP 233
Query: 124 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 183
C + ++++DA GR T+ T ++ + TLM + + Q+ G + +V +I+
Sbjct: 234 CIIFMDEIDAIGGRR--FTEGTSADREIQRTLMELLN-----QMDGF---DALGQVKMIM 283
Query: 184 TGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCK----GIFRNDNVADDDIVKLVDT 237
N TL L+R GR+++ P + R+ V K I ++ + + +VKL D
Sbjct: 284 ATNRPDTLDPALLRPGRLDRKIEIPLPNEQARMDVLKIHAAPIAKHGEIDWEAVVKLSDG 343
Query: 238 FPGQSI 243
F G +
Sbjct: 344 FNGADL 349
>gi|254166928|ref|ZP_04873782.1| AAA family ATPase, CDC48 subfamily [Aciduliprofundum boonei T469]
gi|289596082|ref|YP_003482778.1| ATPase AAA [Aciduliprofundum boonei T469]
gi|197624538|gb|EDY37099.1| AAA family ATPase, CDC48 subfamily [Aciduliprofundum boonei T469]
gi|289533869|gb|ADD08216.1| AAA family ATPase, CDC48 subfamily [Aciduliprofundum boonei T469]
Length = 727
Score = 47.4 bits (111), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 47/189 (24%), Positives = 80/189 (42%), Gaps = 19/189 (10%)
Query: 55 NIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREA 114
+K+P + ++G G GK+ + V + N I + E S GE K +R+ +R+A
Sbjct: 485 KVKIPKGILLYGPPGTGKTLLAKAVATESEANFISVKGPEFLSKWVGESEKAVREVFRKA 544
Query: 115 ADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKE 174
++ + I+++DA A G V ++V+ L M E
Sbjct: 545 ----RQAAPAVIFIDEIDAIAPMRGRDIGSHVTERVVSQILTE------------MDGLE 588
Query: 175 ENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPT--REDRIGVCKGIFRNDNVADD-DI 231
E V +I N L L+R GR ++ + P ++ R + K R +A+D DI
Sbjct: 589 ELHNVTVIAATNRPDILDPALLRPGRFDRIVYVPIPDKDARKEIFKIHLRGRPLAEDVDI 648
Query: 232 VKLVDTFPG 240
KL + G
Sbjct: 649 DKLAEKTEG 657
>gi|254167708|ref|ZP_04874558.1| 26S proteasome subunit P45 family [Aciduliprofundum boonei T469]
gi|289597057|ref|YP_003483753.1| 26S proteasome subunit P45 family [Aciduliprofundum boonei T469]
gi|197623236|gb|EDY35801.1| 26S proteasome subunit P45 family [Aciduliprofundum boonei T469]
gi|289534844|gb|ADD09191.1| 26S proteasome subunit P45 family [Aciduliprofundum boonei T469]
Length = 394
Score = 47.4 bits (111), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 60/229 (26%), Positives = 90/229 (39%), Gaps = 43/229 (18%)
Query: 64 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 123
+ G G GK+ + V I EL GE AKL+R+ + D+ +K
Sbjct: 177 LAGPPGTGKTLLAKAVAHHTHATFIRTVGSELVRKYIGEGAKLVRELF----DLARKKAP 232
Query: 124 CCLMINDLDA-GAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPII 182
+ I+++DA GA R+ T ++ V TLM + +L G E V II
Sbjct: 233 SIVFIDEIDAIGARRLDMATS---GDREVQRTLMQL-----LAELDGF---EPLDNVKII 281
Query: 183 VTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCKGIFRNDNVAD---DDIVKLVDT 237
N L L+R GR ++ P + RI + K R N+ D + I K D
Sbjct: 282 AATNRPDILDEALLRPGRFDRIIQVPYPDYDARIEILKIHTRRMNLKDVNLEKIAKKTDG 341
Query: 238 FPGQSI----------------------DFFGALRARVYDDEVRKWISG 264
F G + DF A+R ++ D++RK I G
Sbjct: 342 FSGADLKVICMEAGMFAIRDERDYVTQEDFENAIRKFLHADDLRKEIPG 390
>gi|448534026|ref|ZP_21621530.1| ATPase AAA [Halorubrum hochstenium ATCC 700873]
gi|445705241|gb|ELZ57142.1| ATPase AAA [Halorubrum hochstenium ATCC 700873]
Length = 745
Score = 47.4 bits (111), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 51/192 (26%), Positives = 73/192 (38%), Gaps = 23/192 (11%)
Query: 64 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQ---RYREAADIIKK 120
+ G G GK+ + + G+N I ++ EL GE K +R+ R R+AA I
Sbjct: 525 LHGPPGTGKTMLARAIAGESGVNFIQVAGPELLDRYVGESEKAVRELFDRARQAAPAIVF 584
Query: 121 GKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVP 180
+ D DA G G + V+ + L DNP V
Sbjct: 585 FDEIDAVATDRDAAGGDGSGVGERVVSQLLTE--LDRAGDNPNLV--------------- 627
Query: 181 IIVTGNDFSTLYAPLIRDGRMEKFYWAPT--REDRIGVCKGIFRNDNVADD-DIVKLVDT 237
++ N L L+R GR+E P RE R + R +ADD D+ +L D
Sbjct: 628 VLAATNRRDALDRALLRPGRLETHVEVPEPDREARRKILDVHTREKPIADDVDVERLADE 687
Query: 238 FPGQSIDFFGAL 249
G S AL
Sbjct: 688 TEGYSGAEIAAL 699
>gi|448561286|ref|ZP_21634638.1| proteasome-activating nucleotidase [Haloferax prahovense DSM 18310]
gi|448582081|ref|ZP_21645585.1| proteasome-activating nucleotidase [Haloferax gibbonsii ATCC 33959]
gi|448605891|ref|ZP_21658484.1| proteasome-activating nucleotidase [Haloferax sulfurifontis ATCC
BAA-897]
gi|448625274|ref|ZP_21671041.1| proteasome-activating nucleotidase [Haloferax denitrificans ATCC
35960]
gi|445721518|gb|ELZ73186.1| proteasome-activating nucleotidase [Haloferax prahovense DSM 18310]
gi|445731729|gb|ELZ83312.1| proteasome-activating nucleotidase [Haloferax gibbonsii ATCC 33959]
gi|445741214|gb|ELZ92718.1| proteasome-activating nucleotidase [Haloferax sulfurifontis ATCC
BAA-897]
gi|445749036|gb|EMA00482.1| proteasome-activating nucleotidase [Haloferax denitrificans ATCC
35960]
Length = 405
Score = 47.4 bits (111), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 47/176 (26%), Positives = 79/176 (44%), Gaps = 17/176 (9%)
Query: 64 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 123
++G G GK+ + V + + I M+ EL GE AKL+R + ++ ++ +
Sbjct: 188 LYGPPGTGKTMLAKAVANQTNASFIKMAGSELVHKFIGEGAKLVRDLF----EVARENEP 243
Query: 124 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 183
+ I+++DA A + T T + V T+M + L M +E + II
Sbjct: 244 AVIFIDEIDAIASKR--TDSKTSGDAEVQRTMMQL--------LAEMDGFDERGNIRIIA 293
Query: 184 TGNDFSTLYAPLIRDGRMEKFYWAPT-REDRIGVCKGIF-RNDNVADD-DIVKLVD 236
N F L ++R GR ++ P ED + I R NV+DD D V+L +
Sbjct: 294 ATNRFDMLDPAILRPGRFDRLIEVPKPNEDGREIIFQIHTRKMNVSDDVDFVELAE 349
>gi|423074649|ref|ZP_17063374.1| ATP-dependent metallopeptidase HflB [Desulfitobacterium hafniense
DP7]
gi|361854469|gb|EHL06535.1| ATP-dependent metallopeptidase HflB [Desulfitobacterium hafniense
DP7]
Length = 493
Score = 47.4 bits (111), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 34/144 (23%), Positives = 66/144 (45%), Gaps = 13/144 (9%)
Query: 88 IMMSAGELESGNAGEPAKLIRQRYREAADIIKKGK--MCCLMINDLDAGAGRMGGTTQYT 145
+ +S E AG A +R+ +++A ++ KK K + I+++D + G +
Sbjct: 127 LAVSGSEFVEMYAGVGADRVRRLFKKARELAKKEKKDRAIIFIDEMDILGAKRGSNVSHH 186
Query: 146 VNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFY 205
+Q +N L V++ G+ N E+ P++ +I N L L+R GR ++
Sbjct: 187 EYDQTLNQLL---------VEMDGLGNSEQGPKILMIAATNRAEALDPALVRPGRFDRLV 237
Query: 206 WA--PTREDRIGVCKGIFRNDNVA 227
P +E R+ + K +N +A
Sbjct: 238 KVDLPDKEGRLAILKIHTKNKPLA 261
>gi|255713900|ref|XP_002553232.1| KLTH0D11990p [Lachancea thermotolerans]
gi|238934612|emb|CAR22794.1| KLTH0D11990p [Lachancea thermotolerans CBS 6340]
Length = 433
Score = 47.4 bits (111), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 41/148 (27%), Positives = 72/148 (48%), Gaps = 14/148 (9%)
Query: 56 IKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 115
IK P + ++G G GK+ + V A +G N I A + GE A++IR+ + A
Sbjct: 208 IKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVDKYIGESARIIREMFAYA- 266
Query: 116 DIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEE 175
K+ + C + ++++DA GR ++ T ++ + TLM + Q+ G N +
Sbjct: 267 ---KEHEPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMEL-----LTQMDGFDNLGQ 316
Query: 176 NPRVPIIVTGNDFSTLYAPLIRDGRMEK 203
II+ N TL L+R GR+++
Sbjct: 317 ---TKIIMATNRPDTLDPALLRPGRLDR 341
>gi|195469930|ref|XP_002099889.1| GE16469 [Drosophila yakuba]
gi|194187413|gb|EDX00997.1| GE16469 [Drosophila yakuba]
Length = 397
Score = 47.4 bits (111), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 45/186 (24%), Positives = 88/186 (47%), Gaps = 20/186 (10%)
Query: 64 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 123
++G G GK+ V +++ N + + + + GE A+LIR+ + A D +
Sbjct: 180 LYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIREMFNYARD----HQP 235
Query: 124 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 183
C + ++++DA GR ++ T ++ + TLM + + Q+ G + +V +I+
Sbjct: 236 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGF---DSLGQVKMIM 285
Query: 184 TGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCK----GIFRNDNVADDDIVKLVDT 237
N TL L+R GR+++ P + R+ + K I ++ + + IVKL D
Sbjct: 286 ATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLEILKIHALKIAKHGEIDYEAIVKLSDN 345
Query: 238 FPGQSI 243
F G +
Sbjct: 346 FNGADL 351
>gi|194763525|ref|XP_001963883.1| GF21021 [Drosophila ananassae]
gi|190618808|gb|EDV34332.1| GF21021 [Drosophila ananassae]
Length = 397
Score = 47.4 bits (111), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 45/186 (24%), Positives = 88/186 (47%), Gaps = 20/186 (10%)
Query: 64 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 123
++G G GK+ V +++ N + + + + GE A+LIR+ + A D +
Sbjct: 180 LYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIREMFNYARD----HQP 235
Query: 124 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 183
C + ++++DA GR ++ T ++ + TLM + + Q+ G + +V +I+
Sbjct: 236 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGF---DSLGQVKMIM 285
Query: 184 TGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCK----GIFRNDNVADDDIVKLVDT 237
N TL L+R GR+++ P + R+ + K I ++ + + IVKL D
Sbjct: 286 ATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLEILKIHALKIAKHGEIDYEAIVKLSDN 345
Query: 238 FPGQSI 243
F G +
Sbjct: 346 FNGADL 351
>gi|292655013|ref|YP_003534910.1| proteasome-activating nucleotidase A [Haloferax volcanii DS2]
gi|433423638|ref|ZP_20406268.1| proteasome-activating nucleotidase [Haloferax sp. BAB2207]
gi|448542666|ref|ZP_21624751.1| proteasome-activating nucleotidase [Haloferax sp. ATCC BAA-646]
gi|448549986|ref|ZP_21628591.1| proteasome-activating nucleotidase [Haloferax sp. ATCC BAA-645]
gi|448572170|ref|ZP_21640163.1| proteasome-activating nucleotidase [Haloferax lucentense DSM 14919]
gi|448596896|ref|ZP_21654034.1| proteasome-activating nucleotidase [Haloferax alexandrinus JCM
10717]
gi|291372419|gb|ADE04646.1| proteasome-activating nucleotidase A [Haloferax volcanii DS2]
gi|432198308|gb|ELK54605.1| proteasome-activating nucleotidase [Haloferax sp. BAB2207]
gi|445706946|gb|ELZ58815.1| proteasome-activating nucleotidase [Haloferax sp. ATCC BAA-646]
gi|445713034|gb|ELZ64815.1| proteasome-activating nucleotidase [Haloferax sp. ATCC BAA-645]
gi|445720762|gb|ELZ72433.1| proteasome-activating nucleotidase [Haloferax lucentense DSM 14919]
gi|445740777|gb|ELZ92282.1| proteasome-activating nucleotidase [Haloferax alexandrinus JCM
10717]
Length = 405
Score = 47.0 bits (110), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 47/176 (26%), Positives = 79/176 (44%), Gaps = 17/176 (9%)
Query: 64 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 123
++G G GK+ + V + + I M+ EL GE AKL+R + ++ ++ +
Sbjct: 188 LYGPPGTGKTMLAKAVANQTNASFIKMAGSELVHKFIGEGAKLVRDLF----EVARENEP 243
Query: 124 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 183
+ I+++DA A + T T + V T+M + L M +E + II
Sbjct: 244 AVIFIDEIDAIASKR--TDSKTSGDAEVQRTMMQL--------LAEMDGFDERGNIRIIA 293
Query: 184 TGNDFSTLYAPLIRDGRMEKFYWAPT-REDRIGVCKGIF-RNDNVADD-DIVKLVD 236
N F L ++R GR ++ P ED + I R NV+DD D V+L +
Sbjct: 294 ATNRFDMLDPAILRPGRFDRLIEVPKPNEDGREIIFQIHTRKMNVSDDVDFVELAE 349
>gi|301787789|ref|XP_002929310.1| PREDICTED: 26S protease regulatory subunit 10B-like [Ailuropoda
melanoleuca]
Length = 403
Score = 47.0 bits (110), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 46/186 (24%), Positives = 87/186 (46%), Gaps = 20/186 (10%)
Query: 64 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 123
++G G GK+ V +++ N + + + + GE A LIR+ + A D +
Sbjct: 186 LYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESACLIREMFNYARD----HQP 241
Query: 124 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 183
C + ++++DA GR ++ T ++ + TLM + + Q+ G + RV +I+
Sbjct: 242 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGF---DTLHRVKMIM 291
Query: 184 TGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCK----GIFRNDNVADDDIVKLVDT 237
N TL L+R GR+++ P + R+ + K I ++ + + IVKL D
Sbjct: 292 ATNRPDTLDPALLRPGRLDRKIHIDLPNEQARLDILKIHAGPITKHGEIDYEAIVKLSDG 351
Query: 238 FPGQSI 243
F G +
Sbjct: 352 FNGADL 357
>gi|448580267|ref|ZP_21644930.1| proteasome-activating nucleotidase, partial [Haloferax larsenii JCM
13917]
gi|445722482|gb|ELZ74144.1| proteasome-activating nucleotidase, partial [Haloferax larsenii JCM
13917]
Length = 250
Score = 47.0 bits (110), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 47/176 (26%), Positives = 79/176 (44%), Gaps = 17/176 (9%)
Query: 64 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 123
++G G GK+ + V + + I M+ EL GE AKL+R + ++ ++ +
Sbjct: 33 LYGPPGTGKTMLAKAVANQTNASFIKMAGSELVHKFIGEGAKLVRDLF----EVARENEP 88
Query: 124 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 183
+ I+++DA A + T T + V T+M + L M +E + II
Sbjct: 89 AVIFIDEIDAIASKR--TDSKTSGDAEVQRTMMQL--------LAEMDGFDERGNIRIIA 138
Query: 184 TGNDFSTLYAPLIRDGRMEKFYWAPT-REDRIGVCKGIF-RNDNVADD-DIVKLVD 236
N F L ++R GR ++ P ED + I R NV+DD D V+L +
Sbjct: 139 ATNRFDMLDPAILRPGRFDRLIEVPKPNEDGREIIFQIHTRKMNVSDDVDFVELAE 194
>gi|386763913|ref|NP_572308.3| regulatory particle triple-A ATPase 4 [Drosophila melanogaster]
gi|383293243|gb|AAF46146.3| regulatory particle triple-A ATPase 4 [Drosophila melanogaster]
Length = 397
Score = 47.0 bits (110), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 45/186 (24%), Positives = 88/186 (47%), Gaps = 20/186 (10%)
Query: 64 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 123
++G G GK+ V +++ N + + + + GE A+LIR+ + A D +
Sbjct: 180 LYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIREMFNYARD----HQP 235
Query: 124 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 183
C + ++++DA GR ++ T ++ + TLM + + Q+ G + +V +I+
Sbjct: 236 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGF---DSLGQVKMIM 285
Query: 184 TGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCK----GIFRNDNVADDDIVKLVDT 237
N TL L+R GR+++ P + R+ + K I ++ + + IVKL D
Sbjct: 286 ATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLEILKIHALKIAKHGEIDYEAIVKLSDN 345
Query: 238 FPGQSI 243
F G +
Sbjct: 346 FNGADL 351
>gi|195133630|ref|XP_002011242.1| GI16424 [Drosophila mojavensis]
gi|193907217|gb|EDW06084.1| GI16424 [Drosophila mojavensis]
Length = 397
Score = 47.0 bits (110), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 45/186 (24%), Positives = 88/186 (47%), Gaps = 20/186 (10%)
Query: 64 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 123
++G G GK+ V +++ N + + + + GE A+LIR+ + A D +
Sbjct: 180 LYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIREMFNYARD----HQP 235
Query: 124 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 183
C + ++++DA GR ++ T ++ + TLM + + Q+ G + +V +I+
Sbjct: 236 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGF---DSLGQVKMIM 285
Query: 184 TGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCK----GIFRNDNVADDDIVKLVDT 237
N TL L+R GR+++ P + R+ + K I ++ + + IVKL D
Sbjct: 286 ATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLEILKIHALKIAKHGEIDYEAIVKLSDN 345
Query: 238 FPGQSI 243
F G +
Sbjct: 346 FNGADL 351
>gi|254168540|ref|ZP_04875384.1| AAA family ATPase, CDC48 subfamily [Aciduliprofundum boonei T469]
gi|197622595|gb|EDY35166.1| AAA family ATPase, CDC48 subfamily [Aciduliprofundum boonei T469]
Length = 727
Score = 47.0 bits (110), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 47/189 (24%), Positives = 80/189 (42%), Gaps = 19/189 (10%)
Query: 55 NIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREA 114
+K+P + ++G G GK+ + V + N I + E S GE K +R+ +R+A
Sbjct: 485 KVKIPKGILLYGPPGTGKTLLAKAVATESEANFISVKGPEFLSKWVGESEKAVREVFRKA 544
Query: 115 ADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKE 174
++ + I+++DA A G V ++V+ L M E
Sbjct: 545 ----RQAAPAVIFIDEIDAIAPMRGRDIGSHVTERVVSQILTE------------MDGLE 588
Query: 175 ENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPT--REDRIGVCKGIFRNDNVADD-DI 231
E V +I N L L+R GR ++ + P ++ R + K R +A+D DI
Sbjct: 589 ELHNVTVIAATNRPDILDPALLRPGRFDRIVYVPIPDKDARKEIFKIHLRGRPLAEDVDI 648
Query: 232 VKLVDTFPG 240
KL + G
Sbjct: 649 DKLAEKTEG 657
>gi|302425218|sp|D4GUJ7.2|PAN1_HALVD RecName: Full=Proteasome-activating nucleotidase 1; Short=PAN 1;
AltName: Full=Proteasomal ATPase 1; AltName:
Full=Proteasome regulatory ATPase 1; AltName:
Full=Proteasome regulatory particle 1
gi|54694989|gb|AAV38126.1| proteasome-activating nucleotidase A [Haloferax volcanii DS2]
Length = 406
Score = 47.0 bits (110), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 47/176 (26%), Positives = 79/176 (44%), Gaps = 17/176 (9%)
Query: 64 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 123
++G G GK+ + V + + I M+ EL GE AKL+R + ++ ++ +
Sbjct: 189 LYGPPGTGKTMLAKAVANQTNASFIKMAGSELVHKFIGEGAKLVRDLF----EVARENEP 244
Query: 124 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 183
+ I+++DA A + T T + V T+M + L M +E + II
Sbjct: 245 AVIFIDEIDAIASKR--TDSKTSGDAEVQRTMMQL--------LAEMDGFDERGNIRIIA 294
Query: 184 TGNDFSTLYAPLIRDGRMEKFYWAPT-REDRIGVCKGIF-RNDNVADD-DIVKLVD 236
N F L ++R GR ++ P ED + I R NV+DD D V+L +
Sbjct: 295 ATNRFDMLDPAILRPGRFDRLIEVPKPNEDGREIIFQIHTRKMNVSDDVDFVELAE 350
>gi|409728090|ref|ZP_11270965.1| proteasome-activating nucleotidase [Halococcus hamelinensis 100A6]
gi|448724264|ref|ZP_21706772.1| proteasome-activating nucleotidase [Halococcus hamelinensis 100A6]
gi|445785934|gb|EMA36715.1| proteasome-activating nucleotidase [Halococcus hamelinensis 100A6]
Length = 406
Score = 47.0 bits (110), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 45/168 (26%), Positives = 72/168 (42%), Gaps = 16/168 (9%)
Query: 64 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 123
+ G G GK+ + V + I M+ EL GE AKL+R + ++ ++ +
Sbjct: 188 LHGPPGTGKTMLAKAVANQTDATFIKMAGSELVHKFIGEGAKLVRDLF----EVAREHEP 243
Query: 124 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 183
+ I+++DA A + T T + V T+M + L M EE V II
Sbjct: 244 AVIFIDEIDAIASKR--TDSKTSGDAEVQRTMMQL--------LSEMDGFEERGEVRIIA 293
Query: 184 TGNDFSTLYAPLIRDGRMEKFYWAPT--REDRIGVCKGIFRNDNVADD 229
N F L ++R GR ++ P E R + + R N+ADD
Sbjct: 294 ATNRFDMLDRAILRPGRFDRLIEVPKPDAEGREKIFEIHTRGMNLADD 341
>gi|359484119|ref|XP_002267202.2| PREDICTED: cell division control protein 48 homolog B-like [Vitis
vinifera]
Length = 605
Score = 47.0 bits (110), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 38/163 (23%), Positives = 70/163 (42%), Gaps = 12/163 (7%)
Query: 56 IKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 115
+K P L ++G G GK+ V + G + +S + +AGE +++R+ + EA+
Sbjct: 47 LKWPRGLLLYGPPGTGKTSLVRAVVRECGAHLTTISPHTVHRAHAGESERILREAFSEAS 106
Query: 116 DIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEE 175
GK + I+++DA R + + TLM+ ++ P +
Sbjct: 107 SHAVSGKPSVIFIDEIDALCPRRSSRREQDIRLASQLFTLMD-SNKPLSASV-------- 157
Query: 176 NPRVPIIVTGNDFSTLYAPLIRDGRM--EKFYWAPTREDRIGV 216
P+V ++ + N + L R GR E PT E+R +
Sbjct: 158 -PQVVVVASTNRVDAIDPALRRSGRFDAEVEVTTPTEEERFQI 199
>gi|194896198|ref|XP_001978432.1| GG17681 [Drosophila erecta]
gi|190650081|gb|EDV47359.1| GG17681 [Drosophila erecta]
Length = 397
Score = 47.0 bits (110), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 45/186 (24%), Positives = 88/186 (47%), Gaps = 20/186 (10%)
Query: 64 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 123
++G G GK+ V +++ N + + + + GE A+LIR+ + A D +
Sbjct: 180 LYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIREMFNYARD----HQP 235
Query: 124 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 183
C + ++++DA GR ++ T ++ + TLM + + Q+ G + +V +I+
Sbjct: 236 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGF---DSLGQVKMIM 285
Query: 184 TGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCK----GIFRNDNVADDDIVKLVDT 237
N TL L+R GR+++ P + R+ + K I ++ + + IVKL D
Sbjct: 286 ATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLEILKIHALKIAKHGEIDYEAIVKLSDN 345
Query: 238 FPGQSI 243
F G +
Sbjct: 346 FNGADL 351
>gi|357467393|ref|XP_003603981.1| 26S proteasome regulatory ATPase subunit S10b [Medicago truncatula]
gi|355493029|gb|AES74232.1| 26S proteasome regulatory ATPase subunit S10b [Medicago truncatula]
Length = 402
Score = 47.0 bits (110), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 46/194 (23%), Positives = 92/194 (47%), Gaps = 20/194 (10%)
Query: 56 IKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 115
IK P + ++G G GK+ + + + N + + + + GE ++LIR+ + A
Sbjct: 173 IKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESSRLIREMFGYAR 232
Query: 116 DIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEE 175
D + C + ++++DA GR ++ T ++ + TLM + + QL G ++
Sbjct: 233 D----HQPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QLDGF---DQ 278
Query: 176 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCK----GIFRNDNVADD 229
+V II+ N L L+R GR+++ P + R+ + K GI ++ + +
Sbjct: 279 LGKVKIIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYE 338
Query: 230 DIVKLVDTFPGQSI 243
+VKL + F G +
Sbjct: 339 AVVKLAEGFNGADL 352
>gi|125981363|ref|XP_001354688.1| GA17461 [Drosophila pseudoobscura pseudoobscura]
gi|195164937|ref|XP_002023302.1| GL20276 [Drosophila persimilis]
gi|54642999|gb|EAL31743.1| GA17461 [Drosophila pseudoobscura pseudoobscura]
gi|194105407|gb|EDW27450.1| GL20276 [Drosophila persimilis]
Length = 397
Score = 47.0 bits (110), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 45/186 (24%), Positives = 88/186 (47%), Gaps = 20/186 (10%)
Query: 64 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 123
++G G GK+ V +++ N + + + + GE A+LIR+ + A D +
Sbjct: 180 LYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIREMFNYARD----HQP 235
Query: 124 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 183
C + ++++DA GR ++ T ++ + TLM + + Q+ G + +V +I+
Sbjct: 236 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGF---DSLGQVKMIM 285
Query: 184 TGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCK----GIFRNDNVADDDIVKLVDT 237
N TL L+R GR+++ P + R+ + K I ++ + + IVKL D
Sbjct: 286 ATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLEILKIHALTIAKHGEIDYEAIVKLSDN 345
Query: 238 FPGQSI 243
F G +
Sbjct: 346 FNGADL 351
>gi|148907029|gb|ABR16658.1| unknown [Picea sitchensis]
Length = 398
Score = 47.0 bits (110), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 47/194 (24%), Positives = 93/194 (47%), Gaps = 20/194 (10%)
Query: 56 IKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 115
IK P + ++G G GK+ + + + N + + + + GE A+LIR+ + A
Sbjct: 169 IKPPKGVLLYGPPGTGKTLLARAIASNIEANFLKVVSSAIIDKYIGESARLIREMFGYAR 228
Query: 116 DIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEE 175
D + C + ++++DA GR ++ T ++ + TLM + + QL G ++
Sbjct: 229 D----HQPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QLDGF---DQ 274
Query: 176 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCK----GIFRNDNVADD 229
+V +I+ N L L+R GR+++ P + R+ V K GI ++ ++ +
Sbjct: 275 LGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQARMEVLKIHAAGIAKHGDIDYE 334
Query: 230 DIVKLVDTFPGQSI 243
+VKL + F G +
Sbjct: 335 AVVKLAEGFNGADL 348
>gi|6434958|gb|AAF08391.1|AF145310_1 26S proteasome regulatory complex subunit p42D [Drosophila
melanogaster]
Length = 390
Score = 47.0 bits (110), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 45/186 (24%), Positives = 88/186 (47%), Gaps = 20/186 (10%)
Query: 64 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 123
++G G GK+ V +++ N + + + + GE A+LIR+ + A D +
Sbjct: 173 LYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIREMFNYARD----HQP 228
Query: 124 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 183
C + ++++DA GR ++ T ++ + TLM + + Q+ G + +V +I+
Sbjct: 229 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGF---DSLGQVKMIM 278
Query: 184 TGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCK----GIFRNDNVADDDIVKLVDT 237
N TL L+R GR+++ P + R+ + K I ++ + + IVKL D
Sbjct: 279 ATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLEILKIHALKIAKHGEIDYEAIVKLSDN 338
Query: 238 FPGQSI 243
F G +
Sbjct: 339 FNGADL 344
>gi|448590085|ref|ZP_21650144.1| proteasome-activating nucleotidase [Haloferax elongans ATCC
BAA-1513]
gi|445735200|gb|ELZ86753.1| proteasome-activating nucleotidase [Haloferax elongans ATCC
BAA-1513]
Length = 405
Score = 47.0 bits (110), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 45/168 (26%), Positives = 75/168 (44%), Gaps = 16/168 (9%)
Query: 64 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 123
++G G GK+ + V + + I M+ EL GE AKL+R + ++ ++ +
Sbjct: 188 LYGPPGTGKTMLAKAVANQTNASFIKMAGSELVHKFIGEGAKLVRDLF----EVARENEP 243
Query: 124 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 183
+ I+++DA A + T T + V T+M + L M +E + II
Sbjct: 244 AVIFIDEIDAIASKR--TDSKTSGDAEVQRTMMQL--------LAEMDGFDERGNIRIIA 293
Query: 184 TGNDFSTLYAPLIRDGRMEKFYWAPT-RED-RIGVCKGIFRNDNVADD 229
N F L ++R GR ++ P ED R + K R NV+DD
Sbjct: 294 ATNRFDMLDPAILRPGRFDRLIEVPKPNEDGREIIFKIHTRKMNVSDD 341
>gi|449515756|ref|XP_004164914.1| PREDICTED: 26S protease regulatory subunit S10B homolog B-like
[Cucumis sativus]
Length = 398
Score = 47.0 bits (110), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 46/194 (23%), Positives = 92/194 (47%), Gaps = 20/194 (10%)
Query: 56 IKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 115
IK P + ++G G GK+ + + + N + + + + GE A+LIR+ + A
Sbjct: 169 IKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYAR 228
Query: 116 DIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEE 175
D + C + ++++DA GR ++ T ++ + TLM + + QL G ++
Sbjct: 229 D----HQPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QLDGF---DQ 274
Query: 176 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCK----GIFRNDNVADD 229
+V +I+ N L L+R GR+++ P + R+ + K GI ++ + +
Sbjct: 275 LGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYE 334
Query: 230 DIVKLVDTFPGQSI 243
+VKL + F G +
Sbjct: 335 AVVKLAEGFNGADL 348
>gi|448467063|ref|ZP_21599341.1| proteasome-activating nucleotidase [Halorubrum kocurii JCM 14978]
gi|445812995|gb|EMA62979.1| proteasome-activating nucleotidase [Halorubrum kocurii JCM 14978]
Length = 404
Score = 47.0 bits (110), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 48/182 (26%), Positives = 78/182 (42%), Gaps = 17/182 (9%)
Query: 64 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 123
++G G GK+ + V + I M+ EL GE AKL+R + ++ ++ +
Sbjct: 187 LYGPPGTGKTMLAKAVANETDATFIKMAGSELVHKFIGEGAKLVRDLF----EVARENQP 242
Query: 124 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 183
L I+++DA A + T T + V T+M + L M +E V II
Sbjct: 243 AVLFIDEIDAIASKR--TDSKTSGDAEVQRTMMQL--------LSEMDGFDERGEVRIIA 292
Query: 184 TGNDFSTLYAPLIRDGRMEKFYWAPT--REDRIGVCKGIFRNDNVADD-DIVKLVDTFPG 240
N F L ++R GR ++ P E R + + R N+A D D +L + P
Sbjct: 293 ATNRFDMLDPAILRPGRFDRLIEVPKPGTEGREIIFQIHTRKMNLASDIDFEELAEMTPE 352
Query: 241 QS 242
S
Sbjct: 353 AS 354
>gi|226371786|gb|ACO51518.1| LP16188p [Drosophila melanogaster]
Length = 406
Score = 47.0 bits (110), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 45/186 (24%), Positives = 88/186 (47%), Gaps = 20/186 (10%)
Query: 64 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 123
++G G GK+ V +++ N + + + + GE A+LIR+ + A D +
Sbjct: 189 LYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIREMFNYARD----HQP 244
Query: 124 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 183
C + ++++DA GR ++ T ++ + TLM + + Q+ G + +V +I+
Sbjct: 245 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGF---DSLGQVKMIM 294
Query: 184 TGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCK----GIFRNDNVADDDIVKLVDT 237
N TL L+R GR+++ P + R+ + K I ++ + + IVKL D
Sbjct: 295 ATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLEILKIHALKIAKHGEIDYEAIVKLSDN 354
Query: 238 FPGQSI 243
F G +
Sbjct: 355 FNGADL 360
>gi|353242842|emb|CCA74450.1| probable RPT4-26S proteasome regulatory subunit [Piriformospora
indica DSM 11827]
Length = 389
Score = 47.0 bits (110), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 88/186 (47%), Gaps = 20/186 (10%)
Query: 64 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 123
++G G GK+ V + + N + + + + GE A+LIR+ + A ++ +
Sbjct: 172 LYGPPGTGKTLLARAVASTLQTNFLKVVSSAIVDKYIGESARLIREMFGYA----REHEP 227
Query: 124 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 183
C + ++++DA GR ++ T ++ + TLM + + Q+ G + RV +I+
Sbjct: 228 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGF---DSLGRVKLIM 277
Query: 184 TGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCKGIFRNDNVADD----DIVKLVDT 237
N TL L+R GR+++ P + R+ + K R+ N + D IVKL D
Sbjct: 278 ATNRPDTLDPALLRPGRLDRKIEIPLPNEQGRLEILKIHARSVNKSGDIDYEAIVKLSDG 337
Query: 238 FPGQSI 243
F G +
Sbjct: 338 FNGADL 343
>gi|324508906|gb|ADY43754.1| 26S protease regulatory subunit 4 [Ascaris suum]
Length = 422
Score = 47.0 bits (110), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 40/153 (26%), Positives = 73/153 (47%), Gaps = 20/153 (13%)
Query: 64 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 123
++G G GK+ + V I + +L N+GE AKL+R+ +R A K+
Sbjct: 206 LYGEPGTGKTLLAKAVAHSTSATFIRATGADLIQKNSGEGAKLVRELFRLA----KESAP 261
Query: 124 CCLMINDLDAGAGRMGGTTQYTVNN---QMVNATLMNIADNPTCVQLPGMYNKEENPRVP 180
C + I+++DA GT +Y ++ + V TL+ + + Q+ G ++ + V
Sbjct: 262 CIVFIDEIDA-----VGTKRYDTSSGGEREVQRTLLELLN-----QMDGFESRGD---VK 308
Query: 181 IIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDR 213
II+ N L LIR GR+++ P +++
Sbjct: 309 IIMATNRIDVLDPALIRPGRIDRKIELPKPDEK 341
>gi|336477419|ref|YP_004616560.1| 26S proteasome subunit P45 family protein [Methanosalsum zhilinae
DSM 4017]
gi|335930800|gb|AEH61341.1| 26S proteasome subunit P45 family [Methanosalsum zhilinae DSM 4017]
Length = 410
Score = 47.0 bits (110), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 50/194 (25%), Positives = 82/194 (42%), Gaps = 20/194 (10%)
Query: 56 IKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 115
I+ P + ++G G GK+ + + ++ I MS +L GE A+L+R ++ A
Sbjct: 186 IEPPTGVLLYGAPGTGKTLIAKAIASQANATFIRMSGSDLVQKFVGEGARLVRDVFQMAR 245
Query: 116 DIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEE 175
D L I+++DA G T T + VN T++ + L M +
Sbjct: 246 D----KSPSILFIDEIDAVGGMR--THDGTTGSAEVNRTMLQL--------LAEMDGFDP 291
Query: 176 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRED--RIGVCKGIFRN----DNVADD 229
V II N L L+R GR ++ P ++ R + K R+ D+V D
Sbjct: 292 TGDVKIIAATNRIDLLDPALLRPGRFDRIIEVPLPDESGRSDILKIHTRHMSLGDDVDFD 351
Query: 230 DIVKLVDTFPGQSI 243
+ KL D F G +
Sbjct: 352 RLAKLTDGFSGADL 365
>gi|448584749|ref|ZP_21647492.1| proteasome-activating nucleotidase [Haloferax gibbonsii ATCC 33959]
gi|445727603|gb|ELZ79213.1| proteasome-activating nucleotidase [Haloferax gibbonsii ATCC 33959]
Length = 412
Score = 47.0 bits (110), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 46/176 (26%), Positives = 77/176 (43%), Gaps = 16/176 (9%)
Query: 56 IKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 115
I P + ++G G GK+ + V + + I M+ EL GE A+L+R ++ AA
Sbjct: 183 IDPPAGVLLYGPPGTGKTMLAKAVANETNASFIKMAGSELVQKFIGEGARLVRDLFKLAA 242
Query: 116 DIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEE 175
+ + + I+++DA A + T T + V T+M + L M ++
Sbjct: 243 ----EREPVVIFIDEIDAVASKR--TDSKTSGDAEVQRTMMQL--------LSEMDGFDD 288
Query: 176 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCKGIFRNDNVADD 229
+ II N F L ++R GR ++ P E R + R+ NVADD
Sbjct: 289 RGDIRIIAATNRFDMLDEAILRPGRFDRLIEVPKPAVEGRRRILDIHTRDMNVADD 344
>gi|354545862|emb|CCE42591.1| hypothetical protein CPAR2_202340 [Candida parapsilosis]
Length = 434
Score = 47.0 bits (110), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 41/153 (26%), Positives = 71/153 (46%), Gaps = 14/153 (9%)
Query: 56 IKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 115
IK P + ++G G GK+ + V A +G N I A + GE A+LIR+ + A
Sbjct: 209 IKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVDKYIGESARLIREMFAYA- 267
Query: 116 DIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEE 175
K+ + C + ++++DA GR ++ T ++ + TLM + + G
Sbjct: 268 ---KEHEPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLNQMDGFDTLG------ 316
Query: 176 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAP 208
+ II+ N TL L+R GR+++ P
Sbjct: 317 --QTKIIMATNRPDTLDPALLRAGRLDRKIEIP 347
>gi|448639878|ref|ZP_21677026.1| cell division control protein 48/AAA family ATPase [Haloarcula
sinaiiensis ATCC 33800]
gi|445762405|gb|EMA13626.1| cell division control protein 48/AAA family ATPase [Haloarcula
sinaiiensis ATCC 33800]
Length = 757
Score = 47.0 bits (110), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 59/248 (23%), Positives = 106/248 (42%), Gaps = 32/248 (12%)
Query: 64 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 123
++G G GK+ + V + N I + EL + GE K +R+ + +A ++
Sbjct: 505 MYGPPGTGKTLLAKAVANEAQSNFISVKGPELLNKFVGESEKGVREVFSKA----RENAP 560
Query: 124 CCLMINDLDAGAG-RMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPII 182
+ +++D+ AG R GGTT V ++V+ L +L G+ + E V ++
Sbjct: 561 TVVFFDEIDSIAGERGGGTTDSGVGERVVSQLL---------TELDGIEDME---NVVVV 608
Query: 183 VTGNDFSTLYAPLIRDGRMEKFYWAPT--REDRIGVCKGIFRNDNVAD----DDIVKLVD 236
T N + L+R GR+++ P E R + + R+ +AD D++ D
Sbjct: 609 ATTNRPDLIDDALLRPGRLDRHVHVPVPDEEARHAIFQVHTRDKPLADGVDLDELASRTD 668
Query: 237 TFPGQSIDFFGALRARVYDDEVRKWISGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLE 296
+ G I+ A+ R++I+ V IG S+ N + FE L E
Sbjct: 669 GYVGADIE---AVAREASMAATREFINSVDPEEIGDSVSNVRVTMDHFEH------ALEE 719
Query: 297 YGNMIVQE 304
G + +E
Sbjct: 720 VGPSVTEE 727
>gi|433423490|ref|ZP_20406242.1| proteasome-activating nucleotidase [Haloferax sp. BAB2207]
gi|432198351|gb|ELK54645.1| proteasome-activating nucleotidase [Haloferax sp. BAB2207]
Length = 224
Score = 47.0 bits (110), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 44/168 (26%), Positives = 74/168 (44%), Gaps = 16/168 (9%)
Query: 64 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 123
++G G GK+ + V + + I M+ EL GE A+L+R ++ AA + +
Sbjct: 3 LYGPPGTGKTMLAKAVANETNASFIKMAGSELVQKFIGEGARLVRDLFKLAA----EREP 58
Query: 124 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 183
+ I+++DA A + T T + V T+M + L M ++ + II
Sbjct: 59 VVIFIDEIDAVASKR--TDSKTSGDAEVQRTMMQL--------LSEMDGFDDRGDIRIIA 108
Query: 184 TGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCKGIFRNDNVADD 229
N F L ++R GR ++ P E R + R+ NVADD
Sbjct: 109 ATNRFDMLDEAILRPGRFDRLIEVPKPAVEGRRHILDIHTRDMNVADD 156
>gi|449469945|ref|XP_004152679.1| PREDICTED: 26S protease regulatory subunit S10B homolog B-like
[Cucumis sativus]
Length = 398
Score = 47.0 bits (110), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 46/194 (23%), Positives = 92/194 (47%), Gaps = 20/194 (10%)
Query: 56 IKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 115
IK P + ++G G GK+ + + + N + + + + GE A+LIR+ + A
Sbjct: 169 IKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYAR 228
Query: 116 DIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEE 175
D + C + ++++DA GR ++ T ++ + TLM + + QL G ++
Sbjct: 229 D----HQPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QLDGF---DQ 274
Query: 176 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCK----GIFRNDNVADD 229
+V +I+ N L L+R GR+++ P + R+ + K GI ++ + +
Sbjct: 275 LGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYE 334
Query: 230 DIVKLVDTFPGQSI 243
+VKL + F G +
Sbjct: 335 AVVKLAEGFNGADL 348
>gi|448566798|ref|ZP_21637053.1| proteasome-activating nucleotidase [Haloferax prahovense DSM 18310]
gi|445713387|gb|ELZ65164.1| proteasome-activating nucleotidase [Haloferax prahovense DSM 18310]
Length = 412
Score = 47.0 bits (110), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 46/176 (26%), Positives = 77/176 (43%), Gaps = 16/176 (9%)
Query: 56 IKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 115
I P + ++G G GK+ + V + + I M+ EL GE A+L+R ++ AA
Sbjct: 183 IDPPAGVLLYGPPGTGKTMLAKAVANETNASFIKMAGSELVQKFIGEGARLVRDLFKLAA 242
Query: 116 DIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEE 175
+ + + I+++DA A + T T + V T+M + L M ++
Sbjct: 243 ----EREPVVIFIDEIDAVASKR--TDSKTSGDAEVQRTMMQL--------LSEMDGFDD 288
Query: 176 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCKGIFRNDNVADD 229
+ II N F L ++R GR ++ P E R + R+ NVADD
Sbjct: 289 RGDIRIIAATNRFDMLDEAILRPGRFDRLIEVPKPAVEGRRRILDIHTRDMNVADD 344
>gi|255727949|ref|XP_002548900.1| ribosome biogenesis ATPase RIX7 [Candida tropicalis MYA-3404]
gi|240133216|gb|EER32772.1| ribosome biogenesis ATPase RIX7 [Candida tropicalis MYA-3404]
Length = 825
Score = 47.0 bits (110), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 40/164 (24%), Positives = 74/164 (45%), Gaps = 18/164 (10%)
Query: 64 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 123
++G G GK+ + ++ + +SA + SG +GE K +R + EA +
Sbjct: 232 LYGPPGCGKTTLANALAGELKVPFFNISAPSIVSGMSGESEKKLRDLFEEAKSVAP---- 287
Query: 124 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 183
C + ++++DA + G Q + ++V A L+ + D T + G P++V
Sbjct: 288 CLIFMDEIDAITPKRDGGAQREMERRIV-AQLLTLMDELTLEKTGGK---------PVVV 337
Query: 184 TG--NDFSTLYAPLIRDGRMEK--FYWAPTREDRIGVCKGIFRN 223
G N +L + L R GR ++ P E RI + K + +N
Sbjct: 338 IGATNRPDSLDSALRRAGRFDREICLTVPNEEQRISILKAMTKN 381
Score = 46.6 bits (109), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 46/184 (25%), Positives = 82/184 (44%), Gaps = 23/184 (12%)
Query: 56 IKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 115
I P + +WG G GK+ + V + N I + EL + GE + +RQ ++ A
Sbjct: 553 IAAPAGVLMWGPPGCGKTLLAKAVANESRANFISIKGPELLNKYVGESERAVRQVFQRA- 611
Query: 116 DIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEE 175
+ C + ++LDA R + + ++++VN L +L G+
Sbjct: 612 ---RASTPCIIFFDELDALVPRRDNSMSES-SSRVVNTLL---------TELDGL----- 653
Query: 176 NPRVPIIVTG--NDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCKGIFRNDNVADDDI 231
N R + V G N + ++R GR++K + P+ E+R+ + K I R++N
Sbjct: 654 NDRKGVFVIGATNRPDMIDPAMLRPGRLDKTLYIELPSPEERLEILKTIVRSNNSPLHSD 713
Query: 232 VKLV 235
V LV
Sbjct: 714 VSLV 717
>gi|83315300|ref|XP_730734.1| 26S proteasome subunit P45 [Plasmodium yoelii yoelii 17XNL]
gi|23490548|gb|EAA22299.1| 26S proteasome subunit P45 family, putative [Plasmodium yoelii
yoelii]
Length = 475
Score = 47.0 bits (110), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 41/157 (26%), Positives = 72/157 (45%), Gaps = 16/157 (10%)
Query: 64 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 123
++G G GK+ + + I + EL GE A+L+R+ ++ A K K
Sbjct: 231 LYGPPGTGKTLTARAIANRTDACFICVIGSELVQKYVGEGARLVRELFQMA----KSKKA 286
Query: 124 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 183
C L I+++DA G G + + + V T++ I + QL G N+ + +I+
Sbjct: 287 CILFIDEVDAIGGSRGDESAH--GDHEVQRTMLEIVN-----QLDGFDNRGN---IKVIM 336
Query: 184 TGNDFSTLYAPLIRDGRMEKF--YWAPTREDRIGVCK 218
N TL + L+R GR+++ + P E R + K
Sbjct: 337 ATNRPDTLDSALVRPGRIDRKIEFSLPDLEGRTHIFK 373
>gi|427729404|ref|YP_007075641.1| AAA ATPase [Nostoc sp. PCC 7524]
gi|427365323|gb|AFY48044.1| AAA+ family ATPase [Nostoc sp. PCC 7524]
Length = 503
Score = 47.0 bits (110), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 46/201 (22%), Positives = 83/201 (41%), Gaps = 30/201 (14%)
Query: 53 LPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYR 112
LP+ + L++GI +G GKS + + + + + G L +G GE R R
Sbjct: 256 LPHPRGLLLVGI---QGTGKSLTAKAIAHHWHLPLLRLDVGRLFAGLVGESES----RTR 308
Query: 113 EAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYN 172
+ + + C L I+++D +G +++ + +A
Sbjct: 309 QMIQVAEALAPCVLWIDEIDKAFSGLGSKGDAGTTSRVFGTFITWLA------------- 355
Query: 173 KEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDR---IGVCKGIFRNDNVA 227
E+ V ++ T ND L ++R GR ++ ++ PT+E+R V R N+
Sbjct: 356 -EKTSPVFVVATANDIQALPPEMLRKGRFDEIFFVGLPTQEERKAIFNVHLSRLRPHNLK 414
Query: 228 DDDIVKLVDTFPGQSIDFFGA 248
+ DI +L P DF GA
Sbjct: 415 NYDIERLAYETP----DFSGA 431
>gi|149239116|ref|XP_001525434.1| 26S protease subunit RPT4 [Lodderomyces elongisporus NRRL YB-4239]
gi|146450927|gb|EDK45183.1| 26S protease subunit RPT4 [Lodderomyces elongisporus NRRL YB-4239]
Length = 434
Score = 47.0 bits (110), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 41/153 (26%), Positives = 71/153 (46%), Gaps = 14/153 (9%)
Query: 56 IKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 115
IK P + ++G G GK+ + V A +G N I A + GE A+LIR+ + A
Sbjct: 209 IKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVDKYIGESARLIREMFAYA- 267
Query: 116 DIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEE 175
K+ + C + ++++DA GR ++ T ++ + TLM + + G
Sbjct: 268 ---KEHEPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLNQMDGFDTLG------ 316
Query: 176 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAP 208
+ II+ N TL L+R GR+++ P
Sbjct: 317 --QTKIIMATNRPDTLDPALLRAGRLDRKIEIP 347
>gi|325185486|emb|CCA19969.1| ribosome biogenesis ATPase RIX7 putative [Albugo laibachii Nc14]
Length = 770
Score = 47.0 bits (110), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 46/199 (23%), Positives = 89/199 (44%), Gaps = 29/199 (14%)
Query: 37 AFMDKLVVHIT------KNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMM 90
A D+LVV I + F +L +++P + ++G G GK+ + + + N I +
Sbjct: 477 AVRDELVVSILHPIRHPERFQAL-GLEMPAGVLLYGPPGCGKTLLAKAIANESEANFISI 535
Query: 91 SAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGR----MGGTTQYTV 146
EL GE + +RQ ++ A + C + ++LDA R MG + +V
Sbjct: 536 KGPELLDKYVGESERAVRQVFQRA----RASSPCVIFFDELDALCPRRSNGMGYDSGNSV 591
Query: 147 NNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW 206
++VN L ++ G+ +++ V +I N + ++R GR++K +
Sbjct: 592 TERVVNQLL---------TEMDGLDSRKN---VFVIAATNRPDIIDPAMLRPGRLDKLLY 639
Query: 207 A--PTREDRIGVCKGIFRN 223
P EDR+ + + + R
Sbjct: 640 VPLPVPEDRLSILQTVTRR 658
>gi|325968403|ref|YP_004244595.1| ATPase AAA [Vulcanisaeta moutnovskia 768-28]
gi|323707606|gb|ADY01093.1| AAA family ATPase [Vulcanisaeta moutnovskia 768-28]
Length = 885
Score = 47.0 bits (110), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 51/187 (27%), Positives = 80/187 (42%), Gaps = 23/187 (12%)
Query: 64 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 123
++G G GK+ + K+G I+M+ GEL S GE R E I K
Sbjct: 382 LFGPPGVGKTMLARAIAGKLGWTTIIMNLGELLSKYYGES----ENRLAELFKIAKNYAP 437
Query: 124 CCLMINDLDA-GAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPII 182
++I++ DA G R T+Y ++ V L+NI ++ G+ EN + +I
Sbjct: 438 SVIIIDEFDAIGKAR----TRYVSDD--VTPRLLNI----LLSEMDGITKGNEN--ILVI 485
Query: 183 VTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCKGIFRNDNVADD----DIVKLVD 236
T N L L+R GR +K + P E R + + + R+ + + KL D
Sbjct: 486 GTTNQPDLLDPALLRPGRFDKVIYVPPPNEETRAKMLETMLRDKPIQGSIDYAKLAKLSD 545
Query: 237 TFPGQSI 243
F G I
Sbjct: 546 RFTGADI 552
>gi|225428386|ref|XP_002283544.1| PREDICTED: 26S protease regulatory subunit S10B homolog B isoform 1
[Vitis vinifera]
gi|297744432|emb|CBI37694.3| unnamed protein product [Vitis vinifera]
Length = 399
Score = 47.0 bits (110), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 46/194 (23%), Positives = 92/194 (47%), Gaps = 20/194 (10%)
Query: 56 IKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 115
IK P + ++G G GK+ + + + N + + + + GE A+LIR+ + A
Sbjct: 170 IKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYAR 229
Query: 116 DIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEE 175
D + C + ++++DA GR ++ T ++ + TLM + + QL G ++
Sbjct: 230 D----HQPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QLDGF---DQ 275
Query: 176 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCK----GIFRNDNVADD 229
+V +I+ N L L+R GR+++ P + R+ + K GI ++ + +
Sbjct: 276 LGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYE 335
Query: 230 DIVKLVDTFPGQSI 243
+VKL + F G +
Sbjct: 336 AVVKLAEGFNGADL 349
>gi|448476346|ref|ZP_21603510.1| proteasome-activating nucleotidase [Halorubrum aidingense JCM
13560]
gi|445815895|gb|EMA65814.1| proteasome-activating nucleotidase [Halorubrum aidingense JCM
13560]
Length = 405
Score = 47.0 bits (110), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 38/145 (26%), Positives = 63/145 (43%), Gaps = 14/145 (9%)
Query: 64 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 123
++G G GK+ + V + I M+ EL GE AKL+R + ++ ++ +
Sbjct: 188 LYGPPGTGKTMLAKAVANETDATFIKMAGSELVHKFIGEGAKLVRDLF----EVARENQP 243
Query: 124 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 183
L I+++DA A + T T + V T+M + L M +E V II
Sbjct: 244 AVLFIDEIDAIASKR--TDSKTSGDAEVQRTMMQL--------LSEMDGFDERGEVRIIA 293
Query: 184 TGNDFSTLYAPLIRDGRMEKFYWAP 208
N F L ++R GR ++ P
Sbjct: 294 ATNRFDMLDPAILRPGRFDRLIEVP 318
>gi|448659284|ref|ZP_21683252.1| cell division control protein 48 [Haloarcula californiae ATCC
33799]
gi|445760786|gb|EMA12043.1| cell division control protein 48 [Haloarcula californiae ATCC
33799]
Length = 757
Score = 47.0 bits (110), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 59/248 (23%), Positives = 106/248 (42%), Gaps = 32/248 (12%)
Query: 64 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 123
++G G GK+ + V + N I + EL + GE K +R+ + +A ++
Sbjct: 505 MYGPPGTGKTLLAKAVANEAQSNFISVKGPELLNKFVGESEKGVREVFSKA----RENAP 560
Query: 124 CCLMINDLDAGAG-RMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPII 182
+ +++D+ AG R GGTT V ++V+ L +L G+ + E V ++
Sbjct: 561 TVVFFDEIDSIAGERGGGTTDSGVGERVVSQLL---------TELDGIEDME---NVVVV 608
Query: 183 VTGNDFSTLYAPLIRDGRMEKFYWAPTRED--RIGVCKGIFRNDNVAD----DDIVKLVD 236
T N + L+R GR+++ P ++ R + R+ +AD DD+ D
Sbjct: 609 ATTNRPDLIDDALLRPGRLDRHVHVPVPDEDARRAIFHVHTRDKPLADGVDLDDLASRTD 668
Query: 237 TFPGQSIDFFGALRARVYDDEVRKWISGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLE 296
+ G I+ A+ R++I+ V IG S+ N + FE L E
Sbjct: 669 GYVGADIE---AVAREASMAATREFINSVDPEDIGDSVSNVRVTMDHFEH------ALEE 719
Query: 297 YGNMIVQE 304
G + +E
Sbjct: 720 VGPSVTEE 727
>gi|55377635|ref|YP_135485.1| cell division control protein 48 [Haloarcula marismortui ATCC
43049]
gi|55230360|gb|AAV45779.1| cell division control protein 48 [Haloarcula marismortui ATCC
43049]
Length = 757
Score = 47.0 bits (110), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 59/248 (23%), Positives = 106/248 (42%), Gaps = 32/248 (12%)
Query: 64 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 123
++G G GK+ + V + N I + EL + GE K +R+ + +A ++
Sbjct: 505 MYGPPGTGKTLLAKAVANEAQSNFISVKGPELLNKFVGESEKGVREVFSKA----RENAP 560
Query: 124 CCLMINDLDAGAG-RMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPII 182
+ +++D+ AG R GGTT V ++V+ L +L G+ + E V ++
Sbjct: 561 TVVFFDEIDSIAGERGGGTTDSGVGERVVSQLL---------TELDGIEDME---NVVVV 608
Query: 183 VTGNDFSTLYAPLIRDGRMEKFYWAPT--REDRIGVCKGIFRNDNVAD----DDIVKLVD 236
T N + L+R GR+++ P E R + + R+ +AD D++ D
Sbjct: 609 ATTNRPDLIDDALLRPGRLDRHVHVPVPDEEARRAIFQVHTRDKPLADGVDLDELASRTD 668
Query: 237 TFPGQSIDFFGALRARVYDDEVRKWISGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLE 296
+ G I+ A+ R++I+ V IG S+ N + FE L E
Sbjct: 669 GYVGADIE---AVAREASMAATREFINSVDPEDIGDSVSNVRVTMDHFEH------ALSE 719
Query: 297 YGNMIVQE 304
G + +E
Sbjct: 720 VGPSVTEE 727
>gi|292656086|ref|YP_003535983.1| proteasome-activating nucleotidase B [Haloferax volcanii DS2]
gi|74487127|sp|Q5UT56.1|PAN2_HALVD RecName: Full=Proteasome-activating nucleotidase 2; Short=PAN 2;
AltName: Full=Proteasomal ATPase 2; AltName:
Full=Proteasome regulatory ATPase 2; AltName:
Full=Proteasome regulatory particle 2
gi|54694991|gb|AAV38127.1| proteasome-activating nucleotidase B [Haloferax volcanii DS2]
gi|291372348|gb|ADE04575.1| proteasome-activating nucleotidase B [Haloferax volcanii DS2]
Length = 412
Score = 47.0 bits (110), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 44/168 (26%), Positives = 74/168 (44%), Gaps = 16/168 (9%)
Query: 64 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 123
++G G GK+ + V + + I M+ EL GE A+L+R ++ AA + +
Sbjct: 191 LYGPPGTGKTMLAKAVANETNASFIKMAGSELVQKFIGEGARLVRDLFKLAA----EREP 246
Query: 124 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 183
+ I+++DA A + T T + V T+M + L M ++ + II
Sbjct: 247 VVVFIDEIDAVASKR--TDSKTSGDAEVQRTMMQL--------LSEMDGFDDRGDIRIIA 296
Query: 184 TGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCKGIFRNDNVADD 229
N F L ++R GR ++ P E R + R+ NVADD
Sbjct: 297 ATNRFDMLDEAILRPGRFDRLIEVPKPAVEGRRHILDIHTRDMNVADD 344
>gi|84996219|ref|XP_952831.1| 26S proteasome ATPase subunit [Theileria annulata strain Ankara]
gi|65303829|emb|CAI76206.1| 26S proteasome ATPase subunit, putative [Theileria annulata]
Length = 448
Score = 47.0 bits (110), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 52/191 (27%), Positives = 87/191 (45%), Gaps = 20/191 (10%)
Query: 56 IKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 115
IK P + ++G G GK+ + +G N + + A + GE AK+IR+ + A
Sbjct: 223 IKPPKGVLLYGPPGTGKTLLARALANDLGCNFLKVVASAVVDKYIGESAKIIREMFGYAK 282
Query: 116 DIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEE 175
D + C + I+++DA GR +Q T ++ + TLM + L G +E
Sbjct: 283 D----NQPCIIFIDEIDAIGGRR--FSQGTSADREIQRTLMEL-----LTHLDGF---DE 328
Query: 176 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRED--RIGVCKGIFRNDNVA----DD 229
+V II+ N L L+R GR+++ P + RI + K + N+ +
Sbjct: 329 LGQVKIIMATNRPDVLDPALLRPGRIDRKIEIPLPNETARIEILKIHTQKLNIQYPINYN 388
Query: 230 DIVKLVDTFPG 240
+I KL D F G
Sbjct: 389 NICKLCDGFNG 399
>gi|241958488|ref|XP_002421963.1| 26S protease subunit, putative [Candida dubliniensis CD36]
gi|223645308|emb|CAX39964.1| 26S protease subunit, putative [Candida dubliniensis CD36]
Length = 429
Score = 47.0 bits (110), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 70/148 (47%), Gaps = 14/148 (9%)
Query: 56 IKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 115
IK P + ++G G GK+ + V A +G N I A + GE A+LIR+ + A
Sbjct: 204 IKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASAIVDKYIGESARLIREMFAYA- 262
Query: 116 DIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEE 175
K+ + C + ++++DA GR ++ T ++ + TLM + + G
Sbjct: 263 ---KEHEPCIIFMDEVDAIGGRR--FSEGTSADREIQRTLMELLNQMDGFDTLG------ 311
Query: 176 NPRVPIIVTGNDFSTLYAPLIRDGRMEK 203
+ II+ N TL L+R GR+++
Sbjct: 312 --QTKIIMATNRPDTLDPALLRAGRLDR 337
>gi|68476913|ref|XP_717434.1| likely 26S proteasome regulatory particle ATPase Rpt4p [Candida
albicans SC5314]
gi|68477104|ref|XP_717345.1| likely 26S proteasome regulatory particle ATPase Rpt4p [Candida
albicans SC5314]
gi|46439054|gb|EAK98376.1| likely 26S proteasome regulatory particle ATPase Rpt4p [Candida
albicans SC5314]
gi|46439147|gb|EAK98468.1| likely 26S proteasome regulatory particle ATPase Rpt4p [Candida
albicans SC5314]
Length = 428
Score = 47.0 bits (110), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 70/148 (47%), Gaps = 14/148 (9%)
Query: 56 IKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 115
IK P + ++G G GK+ + V A +G N I A + GE A+LIR+ + A
Sbjct: 203 IKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASAIVDKYIGESARLIREMFAYA- 261
Query: 116 DIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEE 175
K+ + C + ++++DA GR ++ T ++ + TLM + + G
Sbjct: 262 ---KEHEPCIIFMDEVDAIGGRR--FSEGTSADREIQRTLMELLNQMDGFDTLG------ 310
Query: 176 NPRVPIIVTGNDFSTLYAPLIRDGRMEK 203
+ II+ N TL L+R GR+++
Sbjct: 311 --QTKIIMATNRPDTLDPALLRAGRLDR 336
>gi|448457064|ref|ZP_21595638.1| proteasome-activating nucleotidase [Halorubrum lipolyticum DSM
21995]
gi|445811151|gb|EMA61161.1| proteasome-activating nucleotidase [Halorubrum lipolyticum DSM
21995]
Length = 405
Score = 47.0 bits (110), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 38/145 (26%), Positives = 63/145 (43%), Gaps = 14/145 (9%)
Query: 64 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 123
++G G GK+ + V + I M+ EL GE AKL+R + ++ ++ +
Sbjct: 188 LYGPPGTGKTMLAKAVANETDATFIKMAGSELVHKFIGEGAKLVRDLF----EVARENQP 243
Query: 124 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 183
L I+++DA A + T T + V T+M + L M +E V II
Sbjct: 244 AVLFIDEIDAIASKR--TDSKTSGDAEVQRTMMQL--------LSEMDGFDERGEVRIIA 293
Query: 184 TGNDFSTLYAPLIRDGRMEKFYWAP 208
N F L ++R GR ++ P
Sbjct: 294 ATNRFDMLDPAILRPGRFDRLIEVP 318
>gi|20092335|ref|NP_618410.1| cell division control protein 48 AAA family protein [Methanosarcina
acetivorans C2A]
gi|19917582|gb|AAM06890.1| cell division control protein 48 AAA family protein [Methanosarcina
acetivorans C2A]
Length = 786
Score = 47.0 bits (110), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 44/184 (23%), Positives = 82/184 (44%), Gaps = 18/184 (9%)
Query: 48 KNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLI 107
+ F+ L IK P + ++G G GK+ + V + N I + E+ S GE K I
Sbjct: 533 EKFVKL-GIKAPKGILLYGPPGTGKTLIAQAVAKESNANFISVKGPEMFSKWLGESEKAI 591
Query: 108 RQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQL 167
R+ +++A + C + +++D+ A G + + ++ V L+ D ++
Sbjct: 592 RETFKKARQVAP----CVVFFDEIDSIAAMQGMESTDSRTSERVLNQLLTEMDGLETLK- 646
Query: 168 PGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCKGIFRNDN 225
V II N + L ++R GR ++ + AP R+ R+ + K RN
Sbjct: 647 ----------DVVIIAATNRPNLLDPAIMRPGRFDRLVYVGAPDRKGRMKIFKIHTRNTP 696
Query: 226 VADD 229
+A+D
Sbjct: 697 LAED 700
>gi|414076388|ref|YP_006995706.1| AAA ATPase [Anabaena sp. 90]
gi|413969804|gb|AFW93893.1| AAA ATPase [Anabaena sp. 90]
Length = 529
Score = 47.0 bits (110), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 50/200 (25%), Positives = 88/200 (44%), Gaps = 29/200 (14%)
Query: 53 LPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYR 112
+PN K L++GI +G GKS + + + + + + G L G GE IRQ +
Sbjct: 264 IPNPKGVLLVGI---QGTGKSLSAKTIAHEWRLPLLRLDVGRLFGGIVGESENRIRQMIQ 320
Query: 113 EAADIIKKGKMCCLMINDLDAGAGRM-GGTTQYTVNNQMVNATLMNIADNPTCVQLPGMY 171
A I C L ++++D G + GT + ++ V TL+ +
Sbjct: 321 LAEAI----SPCVLWMDEIDKAFGNINSGTDGDSGTSRRVFGTLIT-------------W 363
Query: 172 NKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCK---GIFRNDNV 226
+E+ V ++ T N+ L A L+R GR ++ ++ PT ++R + K R +
Sbjct: 364 MQEKTSPVFMVATANNVQILPAELLRKGRFDEIFFLNLPTEKERHDIFKVHLQKIRPSRL 423
Query: 227 ADDDIVKL---VDTFPGQSI 243
D D+ +L + F G I
Sbjct: 424 RDFDLQRLAKNTENFSGAEI 443
>gi|332373814|gb|AEE62048.1| unknown [Dendroctonus ponderosae]
Length = 391
Score = 47.0 bits (110), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 45/186 (24%), Positives = 88/186 (47%), Gaps = 20/186 (10%)
Query: 64 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 123
++G G GK+ V +++ N + + + + GE A+LIR+ + A D +
Sbjct: 174 LYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIREMFNYAKD----HQP 229
Query: 124 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 183
C + ++++DA GR ++ T ++ + TLM + + Q+ G + +V +I+
Sbjct: 230 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGF---DSLGQVKMIM 279
Query: 184 TGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCK----GIFRNDNVADDDIVKLVDT 237
N TL L+R GR+++ P + R+ + K I ++ + + IVKL D
Sbjct: 280 ATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLEILKIHAGPIAKHGEIDYEAIVKLSDN 339
Query: 238 FPGQSI 243
F G +
Sbjct: 340 FNGADL 345
>gi|260814169|ref|XP_002601788.1| hypothetical protein BRAFLDRAFT_215307 [Branchiostoma floridae]
gi|229287090|gb|EEN57800.1| hypothetical protein BRAFLDRAFT_215307 [Branchiostoma floridae]
Length = 538
Score = 47.0 bits (110), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 52/211 (24%), Positives = 96/211 (45%), Gaps = 25/211 (11%)
Query: 64 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 123
++G G GK+ +V + G+N I + EL S G + +R + A + K
Sbjct: 341 LYGAPGTGKTLLAGVVAKECGMNFISIKGPELLSKYIGASEQAVRDLFVRA----QAAKP 396
Query: 124 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 183
C L ++ D+ A R G V +++VN L + D +Q G+Y R +I
Sbjct: 397 CVLFFDEFDSIAPRRGHDNT-GVTDRVVNQFLTQL-DGVEGLQ--GVYVLAATSRPDLID 452
Query: 184 TGNDFSTLYAPLIRDGRMEKFYWAPT--REDRIGVCKGIFRNDNVADD-DIVKLVDTFPG 240
L+R GR++K P +EDR+ + K + ++ ++++D D+ L +
Sbjct: 453 PA---------LLRPGRLDKCLHCPLPGKEDRVKILKALSKDLDLSEDVDLAGLSE---- 499
Query: 241 QSIDFFGA-LRARVYDDEVRKWISGVGVGSI 270
+ F GA +A Y+ ++ S +GV ++
Sbjct: 500 KCQHFTGADFKALFYNAQLEVIHSNMGVSAL 530
>gi|401015370|gb|AFP89349.1| ribulose-1,5-bisphosphate carboxylase/oxygenase activase, partial
[Prunus persica]
Length = 23
Score = 47.0 bits (110), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 22/23 (95%), Positives = 23/23 (100%)
Query: 82 KMGINPIMMSAGELESGNAGEPA 104
KMGI+PIMMSAGELESGNAGEPA
Sbjct: 1 KMGISPIMMSAGELESGNAGEPA 23
>gi|440493762|gb|ELQ76191.1| 26S proteasome regulatory complex, ATPase RPT4 [Trachipleistophora
hominis]
Length = 324
Score = 47.0 bits (110), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 36/149 (24%), Positives = 74/149 (49%), Gaps = 14/149 (9%)
Query: 64 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 123
++G G GK+ + A M ++ + + A L GE +++IR+ ++ A ++
Sbjct: 107 LYGPPGTGKTLLARAIAATMDVSFLKVVASSLIEKYIGESSRMIREMFQYA----RERTP 162
Query: 124 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 183
C + I+++DA G+ +T+ + +++ V TLM + + QL G + + +V +I+
Sbjct: 163 CIIFIDEIDAIGGKR--STESSSSDREVQRTLMELLN-----QLDGFKSLD---KVKVIM 212
Query: 184 TGNDFSTLYAPLIRDGRMEKFYWAPTRED 212
N L L+R GR+++ P D
Sbjct: 213 ATNRPDILDPALLRPGRLDRKIEIPLPND 241
>gi|339234579|ref|XP_003378844.1| 26S protease regulatory subunit S10B [Trichinella spiralis]
gi|316978544|gb|EFV61519.1| 26S protease regulatory subunit S10B [Trichinella spiralis]
Length = 452
Score = 47.0 bits (110), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 45/186 (24%), Positives = 84/186 (45%), Gaps = 20/186 (10%)
Query: 64 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 123
++G G GK+ V +++ N + + + + GE A++IR+ + A D +
Sbjct: 179 LYGPPGTGKTLLARAVASQLECNFLKVVSSAIVDKYIGESARMIREMFNYARD----HQP 234
Query: 124 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 183
C + ++++DA GR ++ T ++ + TLM + + G +V II+
Sbjct: 235 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLNQMDGFDALG--------KVKIIM 284
Query: 184 TGNDFSTLYAPLIRDGRMEKFYWAP-----TREDRIGV-CKGIFRNDNVADDDIVKLVDT 237
N TL L+R GR+++ P R D I + K I + + + +VKL D
Sbjct: 285 ATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLDIIKIHAKPITKKGIIDFESVVKLSDG 344
Query: 238 FPGQSI 243
F G +
Sbjct: 345 FSGADL 350
>gi|253742286|gb|EES99129.1| 26S protease regulatory subunit 7 [Giardia intestinalis ATCC 50581]
Length = 401
Score = 47.0 bits (110), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 54/208 (25%), Positives = 93/208 (44%), Gaps = 25/208 (12%)
Query: 56 IKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 115
IK P + ++G G GKS C+ + +GI+ I +L GE A+L++ + A
Sbjct: 169 IKPPKSILLYGAPGTGKSLICKCLANSLGISYIKCVGSQLIRKYIGESARLVKDLFAYA- 227
Query: 116 DIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEE 175
+ K C LMI+++DA A + + T N++ V+ L+ + ++ G +E
Sbjct: 228 ---RLKKPCLLMIDEVDAIATKR--SDDGTHNDREVDRALLQL-----LTEIDGFTGLDE 277
Query: 176 NPRVPIIVTGNDFSTLYAPLIRDGRME-----KFYWAPTREDRIGV-CKGIFRNDNVADD 229
+ + I+ N L L+R GR + + R + + + KG+ ++V
Sbjct: 278 S--IKIVFCTNRPEALDPALMRPGRCDVKIEIRLPDPAGRYEILKIHSKGLSLGEDVDFA 335
Query: 230 DIVKLVDTFPGQSIDF------FGALRA 251
IVK D F G + GALRA
Sbjct: 336 GIVKSTDGFNGADLRNIVTEAGLGALRA 363
>gi|238879861|gb|EEQ43499.1| 26S protease subunit RPT4 [Candida albicans WO-1]
Length = 428
Score = 47.0 bits (110), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 70/148 (47%), Gaps = 14/148 (9%)
Query: 56 IKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 115
IK P + ++G G GK+ + V A +G N I A + GE A+LIR+ + A
Sbjct: 203 IKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASAIVDKYIGESARLIREMFAYA- 261
Query: 116 DIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEE 175
K+ + C + ++++DA GR ++ T ++ + TLM + + G
Sbjct: 262 ---KEHEPCIIFMDEVDAIGGRR--FSEGTSADREIQRTLMELLNQMDGFDTLG------ 310
Query: 176 NPRVPIIVTGNDFSTLYAPLIRDGRMEK 203
+ II+ N TL L+R GR+++
Sbjct: 311 --QTKIIMATNRPDTLDPALLRAGRLDR 336
>gi|119179544|ref|XP_001241347.1| hypothetical protein CIMG_08510 [Coccidioides immitis RS]
gi|392866735|gb|EAS30090.2| AAA family ATPase [Coccidioides immitis RS]
Length = 749
Score = 47.0 bits (110), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 45/182 (24%), Positives = 81/182 (44%), Gaps = 21/182 (11%)
Query: 64 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 123
++G G K+ + + + G+N + + E+ S GE + +R+ +R+A + +
Sbjct: 524 LYGPPGCSKTLTVKALATEAGLNFLAVKGAEILSMYVGESERALREIFRKA----RAARP 579
Query: 124 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 183
+ +++DA AGR G +Q +N V TL+N ++ G+ EE V ++
Sbjct: 580 SIIFFDEIDAIAGRRGPGSQSGIN---VLTTLLN--------EMDGI---EELKNVLVVA 625
Query: 184 TGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCKGIFRNDNVADD-DIVKLVDTFPG 240
N TL L+R GR++ + P E R + F V D+ D + L G
Sbjct: 626 ATNKPETLDPALMRPGRLDNILYVGLPDMEARKEILDIWFSKSEVHDEVDPIALASRTEG 685
Query: 241 QS 242
S
Sbjct: 686 YS 687
>gi|303320901|ref|XP_003070445.1| ATPase, AAA family protein [Coccidioides posadasii C735 delta
SOWgp]
gi|240110141|gb|EER28300.1| ATPase, AAA family protein [Coccidioides posadasii C735 delta
SOWgp]
Length = 749
Score = 47.0 bits (110), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 45/182 (24%), Positives = 81/182 (44%), Gaps = 21/182 (11%)
Query: 64 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 123
++G G K+ + + + G+N + + E+ S GE + +R+ +R+A + +
Sbjct: 524 LYGPPGCSKTLTVKALATEAGLNFLAVKGAEILSMYVGESERALREIFRKA----RAARP 579
Query: 124 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 183
+ +++DA AGR G +Q +N V TL+N ++ G+ EE V ++
Sbjct: 580 SIIFFDEIDAIAGRRGPGSQSGIN---VLTTLLN--------EMDGI---EELKNVLVVA 625
Query: 184 TGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCKGIFRNDNVADD-DIVKLVDTFPG 240
N TL L+R GR++ + P E R + F V D+ D + L G
Sbjct: 626 ATNKPETLDPALMRPGRLDNILYVGLPDMEARKEILDIWFSKSEVHDEVDPIALASRTEG 685
Query: 241 QS 242
S
Sbjct: 686 YS 687
>gi|255721295|ref|XP_002545582.1| 26S protease subunit RPT4 [Candida tropicalis MYA-3404]
gi|240136071|gb|EER35624.1| 26S protease subunit RPT4 [Candida tropicalis MYA-3404]
Length = 433
Score = 47.0 bits (110), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 70/148 (47%), Gaps = 14/148 (9%)
Query: 56 IKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 115
IK P + ++G G GK+ + V A +G N I A + GE A+LIR+ + A
Sbjct: 208 IKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASAIVDKYIGESARLIREMFAYA- 266
Query: 116 DIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEE 175
K+ + C + ++++DA GR ++ T ++ + TLM + + G
Sbjct: 267 ---KEHEPCIIFMDEVDAIGGRR--FSEGTSADREIQRTLMELLNQMDGFDTLG------ 315
Query: 176 NPRVPIIVTGNDFSTLYAPLIRDGRMEK 203
+ II+ N TL L+R GR+++
Sbjct: 316 --QTKIIMATNRPDTLDPALLRAGRLDR 341
>gi|255538750|ref|XP_002510440.1| 26S protease regulatory subunit S10b, putative [Ricinus communis]
gi|223551141|gb|EEF52627.1| 26S protease regulatory subunit S10b, putative [Ricinus communis]
Length = 399
Score = 47.0 bits (110), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 46/194 (23%), Positives = 92/194 (47%), Gaps = 20/194 (10%)
Query: 56 IKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 115
IK P + ++G G GK+ + + + N + + + + GE A+LIR+ + A
Sbjct: 170 IKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYAR 229
Query: 116 DIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEE 175
D + C + ++++DA GR ++ T ++ + TLM + + QL G ++
Sbjct: 230 D----HQPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QLDGF---DQ 275
Query: 176 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCK----GIFRNDNVADD 229
+V +I+ N L L+R GR+++ P + R+ + K GI ++ + +
Sbjct: 276 LGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYE 335
Query: 230 DIVKLVDTFPGQSI 243
+VKL + F G +
Sbjct: 336 AVVKLAEGFNGADL 349
>gi|225458173|ref|XP_002281107.1| PREDICTED: 26S protease regulatory subunit S10B homolog B [Vitis
vinifera]
gi|147800891|emb|CAN75568.1| hypothetical protein VITISV_010255 [Vitis vinifera]
gi|302142551|emb|CBI19754.3| unnamed protein product [Vitis vinifera]
Length = 398
Score = 47.0 bits (110), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 46/194 (23%), Positives = 92/194 (47%), Gaps = 20/194 (10%)
Query: 56 IKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 115
IK P + ++G G GK+ + + + N + + + + GE A+LIR+ + A
Sbjct: 169 IKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYAR 228
Query: 116 DIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEE 175
D + C + ++++DA GR ++ T ++ + TLM + + QL G ++
Sbjct: 229 D----HQPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QLDGF---DQ 274
Query: 176 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCK----GIFRNDNVADD 229
+V +I+ N L L+R GR+++ P + R+ + K GI ++ + +
Sbjct: 275 LGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYE 334
Query: 230 DIVKLVDTFPGQSI 243
+VKL + F G +
Sbjct: 335 AVVKLAEGFNGADL 348
>gi|448525868|ref|XP_003869223.1| Rpt4 26S proteasome regulatory subunit [Candida orthopsilosis Co
90-125]
gi|380353576|emb|CCG23087.1| Rpt4 26S proteasome regulatory subunit [Candida orthopsilosis]
Length = 435
Score = 47.0 bits (110), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 41/153 (26%), Positives = 71/153 (46%), Gaps = 14/153 (9%)
Query: 56 IKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 115
IK P + ++G G GK+ + V A +G N I A + GE A+LIR+ + A
Sbjct: 210 IKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVDKYIGESARLIREMFAYA- 268
Query: 116 DIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEE 175
K+ + C + ++++DA GR ++ T ++ + TLM + + G
Sbjct: 269 ---KEHEPCIIFMDEVDAIGGRR--FSEGTSADREIQRTLMELLNQMDGFDTLG------ 317
Query: 176 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAP 208
+ II+ N TL L+R GR+++ P
Sbjct: 318 --QTKIIMATNRPDTLDPALLRAGRLDRKIEIP 348
>gi|300867943|ref|ZP_07112583.1| ATPase, AAA family protein [Oscillatoria sp. PCC 6506]
gi|300334080|emb|CBN57761.1| ATPase, AAA family protein [Oscillatoria sp. PCC 6506]
Length = 527
Score = 47.0 bits (110), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 43/169 (25%), Positives = 78/169 (46%), Gaps = 23/169 (13%)
Query: 53 LPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYR 112
+PN K L++GI +G GKS + + + + + M G+L G GE IRQ
Sbjct: 282 IPNPKGVLLVGI---QGSGKSLAAKSIAHEWHLPLLRMDTGKLFGGIVGESESRIRQMI- 337
Query: 113 EAADIIKKGKMCCLMINDLDAGAGRMGGTTQY-TVNNQMVNATLMNIADNPTCVQLPGMY 171
E A+ I C L I+ +D G + T+ + ++ V ++L+N +
Sbjct: 338 ELAEAIAP---CVLWIDQIDLAFGNINSATERDSGTSRRVFSSLIN-------------W 381
Query: 172 NKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCK 218
+E+ V I+ T N+ L L+R G+ ++ ++ P +R+ + K
Sbjct: 382 MQEKTSSVFIVATANNVRMLPIELLRKGKFDEIFFLSLPHEMERLEIFK 430
>gi|448124612|ref|XP_004204967.1| Piso0_000256 [Millerozyma farinosa CBS 7064]
gi|358249600|emb|CCE72666.1| Piso0_000256 [Millerozyma farinosa CBS 7064]
Length = 835
Score = 46.6 bits (109), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 57/248 (22%), Positives = 102/248 (41%), Gaps = 46/248 (18%)
Query: 45 HITKNFMSL-------PNI------KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMS 91
H+T M L P I + P + ++G G GK+ + ++ + +S
Sbjct: 197 HVTTQLMELIGLPILHPEIYMSTGVEPPRGVLLYGPPGCGKTTIANALAGELQVPFFNIS 256
Query: 92 AGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMV 151
A + SG +GE K +R+ + EA + C + ++++DA + G Q + ++V
Sbjct: 257 APSIVSGMSGESEKKLRELFEEARGLAP----CIIFMDEIDAITPKRDGGAQREMERRIV 312
Query: 152 NATLMNIADNPTCVQLPGMYNKEENPRVPIIVTG--NDFSTLYAPLIRDGRMEKFYW--A 207
A L+ + D T + G P+IV G N +L + L R GR ++
Sbjct: 313 -AQLLTLMDELTLEKTDGK---------PVIVIGATNRPDSLDSALRRAGRFDREICLNV 362
Query: 208 PTREDRIGVCKGIFRNDNVADDD---IVKLVDTFPGQSIDFFGALRARVYDDEVRKWISG 264
P E RI + K + + D D L PG F GA +++ ++
Sbjct: 363 PNEEQRISILKAMTEKLKLEDKDNFNYRTLAKMTPG----FVGA--------DLKSLVTA 410
Query: 265 VGVGSIGK 272
G+ +I +
Sbjct: 411 AGIAAIKR 418
>gi|312137192|ref|YP_004004529.1| ATPase AAA [Methanothermus fervidus DSM 2088]
gi|311224911|gb|ADP77767.1| AAA family ATPase, CDC48 subfamily [Methanothermus fervidus DSM
2088]
Length = 732
Score = 46.6 bits (109), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 55/197 (27%), Positives = 88/197 (44%), Gaps = 24/197 (12%)
Query: 56 IKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 115
IK P + ++G G GK+ + V + G N I + EL S GE K +R+ +R+A
Sbjct: 507 IKPPKGVLLYGPPGTGKTLLAKAVANESGANFIAIKGPELLSKWVGESEKGVREVFRKA- 565
Query: 116 DIIKKGKMCCLMINDLDAGAG-RMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKE 174
++ + +++DA A R G + V ++VN L I G+ E
Sbjct: 566 ---RQTAPTIVFFDEIDAIASTRTGISADSGVTQRVVNQLLTEID---------GL---E 610
Query: 175 ENPRVPIIVTGNDFSTLYAPLIRDGRMEK--FYWAPTREDRIGVCKGIFRNDNVADD-DI 231
E V ++ N + L+R GR ++ P +E R+ + K RN +ADD D+
Sbjct: 611 ELEDVVVLAATNRPDIIDPALLRPGRFDRQIKIGKPDKETRLKIFKVHTRNMPLADDVDL 670
Query: 232 VKLVDTFPGQSIDFFGA 248
KL + G F GA
Sbjct: 671 EKLAEMTEG----FVGA 683
>gi|356510074|ref|XP_003523765.1| PREDICTED: 26S protease regulatory subunit S10B homolog B-like
isoform 1 [Glycine max]
gi|356518571|ref|XP_003527952.1| PREDICTED: 26S protease regulatory subunit S10B homolog B-like
isoform 1 [Glycine max]
Length = 398
Score = 46.6 bits (109), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 46/194 (23%), Positives = 92/194 (47%), Gaps = 20/194 (10%)
Query: 56 IKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 115
IK P + ++G G GK+ + + + N + + + + GE A+LIR+ + A
Sbjct: 169 IKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYAR 228
Query: 116 DIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEE 175
D + C + ++++DA GR ++ T ++ + TLM + + QL G ++
Sbjct: 229 D----HQPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QLDGF---DQ 274
Query: 176 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCK----GIFRNDNVADD 229
+V +I+ N L L+R GR+++ P + R+ + K GI ++ + +
Sbjct: 275 LGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYE 334
Query: 230 DIVKLVDTFPGQSI 243
+VKL + F G +
Sbjct: 335 AVVKLAEGFNGADL 348
>gi|320033057|gb|EFW15006.1| AAA family ATPase [Coccidioides posadasii str. Silveira]
Length = 749
Score = 46.6 bits (109), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 45/182 (24%), Positives = 81/182 (44%), Gaps = 21/182 (11%)
Query: 64 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 123
++G G K+ + + + G+N + + E+ S GE + +R+ +R+A + +
Sbjct: 524 LYGPPGCSKTLTVKALATEAGLNFLAVKGAEILSMYVGESERALREIFRKA----RAARP 579
Query: 124 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 183
+ +++DA AGR G +Q +N V TL+N ++ G+ EE V ++
Sbjct: 580 SIIFFDEIDAIAGRRGPGSQSGIN---VLTTLLN--------EMDGI---EELKNVLVVA 625
Query: 184 TGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCKGIFRNDNVADD-DIVKLVDTFPG 240
N TL L+R GR++ + P E R + F V D+ D + L G
Sbjct: 626 ATNKPETLDPALMRPGRLDNILYVGLPDMEARKEILDIWFSKSEVHDEVDPIALASRTEG 685
Query: 241 QS 242
S
Sbjct: 686 YS 687
>gi|225718662|gb|ACO15177.1| 26S protease regulatory subunit S10B [Caligus clemensi]
Length = 392
Score = 46.6 bits (109), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 44/186 (23%), Positives = 86/186 (46%), Gaps = 20/186 (10%)
Query: 64 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 123
++G G GK+ V +++ N + + + + GE A+LIR+ + A D +
Sbjct: 175 LYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIREMFNYARD----HQP 230
Query: 124 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 183
C + ++++DA GR ++ T ++ + TLM + + + G +V +I+
Sbjct: 231 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLNQMDGFDVLG--------QVKMIM 280
Query: 184 TGNDFSTLYAPLIRDGRMEKFYWAPTRED--RIGVCK----GIFRNDNVADDDIVKLVDT 237
N TL L+R GR+++ P D R+ + K I ++ + + +VKL D
Sbjct: 281 ATNRPDTLDPALLRPGRLDRKVEIPLPNDQARLEILKIHAGPITKHGGIDYEAVVKLSDG 340
Query: 238 FPGQSI 243
F G +
Sbjct: 341 FNGADL 346
>gi|170086734|ref|XP_001874590.1| 26S proteasome regulatory complex, ATPase RPT4 [Laccaria bicolor
S238N-H82]
gi|164649790|gb|EDR14031.1| 26S proteasome regulatory complex, ATPase RPT4 [Laccaria bicolor
S238N-H82]
Length = 404
Score = 46.6 bits (109), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 47/194 (24%), Positives = 90/194 (46%), Gaps = 20/194 (10%)
Query: 56 IKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 115
IK P + ++G G GK+ V A + N + + + + GE A++IR+ + A
Sbjct: 175 IKPPKGVLLYGPPGTGKTLLARAVAATLQTNFLKVVSSAIVDKYIGESARVIREMFGYAR 234
Query: 116 DIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEE 175
D + C + ++++DA GR ++ T ++ + TLM + + Q+ G +
Sbjct: 235 D----HEPCVIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGF---DS 280
Query: 176 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCK----GIFRNDNVADD 229
R +I+ N TL L+R GR+++ P + R+ + K + ++ + +
Sbjct: 281 LGRTKLIMATNRPDTLDPALLRPGRLDRKIEVPLPNEQARLEILKIHAAPVNKSGEIDYE 340
Query: 230 DIVKLVDTFPGQSI 243
IVKL D F G +
Sbjct: 341 SIVKLSDGFNGADL 354
>gi|15227690|ref|NP_178463.1| cell division control protein 48-B [Arabidopsis thaliana]
gi|28201774|sp|Q9ZPR1.1|CD48B_ARATH RecName: Full=Cell division control protein 48 homolog B;
Short=AtCDC48b
gi|4406773|gb|AAD20084.1| putative AAA-type ATPase [Arabidopsis thaliana]
gi|17064734|gb|AAL32521.1| putative AAA-type ATPase [Arabidopsis thaliana]
gi|30725416|gb|AAP37730.1| At2g03670 [Arabidopsis thaliana]
gi|330250640|gb|AEC05734.1| cell division control protein 48-B [Arabidopsis thaliana]
Length = 603
Score = 46.6 bits (109), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 38/165 (23%), Positives = 70/165 (42%), Gaps = 13/165 (7%)
Query: 56 IKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 115
+K P L ++G G GK+ V + + I++S + +AGE K++R+ + EA+
Sbjct: 53 LKWPRGLLLYGPPGTGKTSLVRAVVQECDAHLIVLSPHSVHRAHAGESEKVLREAFAEAS 112
Query: 116 DIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEE 175
K + I+++D R + V TLM+ ++ P+
Sbjct: 113 SHAVSDKPSVIFIDEIDVLCPRRDARREQDVRIASQLFTLMD-SNKPS----------SS 161
Query: 176 NPRVPIIVTGNDFSTLYAPLIRDGRMEKF--YWAPTREDRIGVCK 218
PRV ++ + N + L R GR + P EDR+ + +
Sbjct: 162 APRVVVVASTNRVDAIDPALRRAGRFDALVEVSTPNEEDRLKILQ 206
>gi|429190866|ref|YP_007176544.1| 26S proteasome subunit P45 family [Natronobacterium gregoryi SP2]
gi|448327130|ref|ZP_21516466.1| proteasome-activating nucleotidase [Natronobacterium gregoryi SP2]
gi|429135084|gb|AFZ72095.1| 26S proteasome subunit P45 family [Natronobacterium gregoryi SP2]
gi|445609063|gb|ELY62875.1| proteasome-activating nucleotidase [Natronobacterium gregoryi SP2]
Length = 405
Score = 46.6 bits (109), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 37/145 (25%), Positives = 63/145 (43%), Gaps = 14/145 (9%)
Query: 64 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 123
++G G GK+ + V + I M+ EL GE AKL+R + ++ ++ +
Sbjct: 188 LYGPPGTGKTMLAKAVANQTDATFIKMAGSELVHKFIGEGAKLVRDLF----EVAREHEP 243
Query: 124 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 183
+ I+++DA A + T T + V T+M + L M EE + II
Sbjct: 244 AVIFIDEIDAIAAKR--TESKTSGDAEVQRTMMQL--------LSEMDGFEERGEIRIIA 293
Query: 184 TGNDFSTLYAPLIRDGRMEKFYWAP 208
N F L ++R GR ++ P
Sbjct: 294 ATNRFDMLDRAILRPGRFDRLIEVP 318
>gi|50424825|ref|XP_461002.1| DEHA2F14740p [Debaryomyces hansenii CBS767]
gi|49656671|emb|CAG89370.1| DEHA2F14740p [Debaryomyces hansenii CBS767]
Length = 415
Score = 46.6 bits (109), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 48/194 (24%), Positives = 86/194 (44%), Gaps = 20/194 (10%)
Query: 56 IKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 115
IK P + ++G G GK+ + V A +G N I A + GE A+LIR+ + A
Sbjct: 190 IKSPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASAIVDKYIGESARLIREMFAYA- 248
Query: 116 DIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEE 175
K+ + C + ++++DA GR ++ T ++ + TLM + + G
Sbjct: 249 ---KEHEPCIIFMDEVDAIGGRR--FSEGTSADREIQRTLMELLNQMDGFDTLG------ 297
Query: 176 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCK----GIFRNDNVADD 229
+ +I+ N TL L+R GR+++ P R+ + K + + +
Sbjct: 298 --QTKVIMATNRPDTLDPALLRAGRLDRKIEIGLPNEAGRLEIFKIHTTKVAKQGEFDFE 355
Query: 230 DIVKLVDTFPGQSI 243
+VK+ D F G I
Sbjct: 356 AVVKMSDGFNGADI 369
>gi|344211715|ref|YP_004796035.1| cell division control protein 48/AAA family ATPase [Haloarcula
hispanica ATCC 33960]
gi|343783070|gb|AEM57047.1| cell division control protein 48 / AAA family ATPase, CDC48
subfamily [Haloarcula hispanica ATCC 33960]
Length = 757
Score = 46.6 bits (109), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 59/248 (23%), Positives = 106/248 (42%), Gaps = 32/248 (12%)
Query: 64 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 123
++G G GK+ + V + N I + EL + GE K +R+ + +A ++
Sbjct: 505 MYGPPGTGKTLLAKAVANEAQSNFISVKGPELLNKFVGESEKGVREVFSKA----RENAP 560
Query: 124 CCLMINDLDAGAG-RMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPII 182
+ +++D+ AG R GGTT V ++V+ L +L G+ + E V ++
Sbjct: 561 TVVFFDEIDSIAGERGGGTTDSGVGERVVSQLL---------TELDGIEDME---NVVVV 608
Query: 183 VTGNDFSTLYAPLIRDGRMEKFYWAPT--REDRIGVCKGIFRNDNVAD----DDIVKLVD 236
T N + L+R GR+++ P E R + + R+ +AD D++ D
Sbjct: 609 ATTNRPDLIDDALLRPGRLDRHVHVPVPDEEARRAIFQVHTRDKPLADGVDLDELASRTD 668
Query: 237 TFPGQSIDFFGALRARVYDDEVRKWISGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLE 296
+ G I+ A+ R++I+ V IG S+ N + FE L E
Sbjct: 669 GYVGADIE---AVAREASMAATREFINSVDPEDIGDSVSNVRVTMDHFEH------ALSE 719
Query: 297 YGNMIVQE 304
G + +E
Sbjct: 720 VGPSVTEE 727
>gi|448414973|ref|ZP_21577922.1| proteasome-activating nucleotidase [Halosarcina pallida JCM 14848]
gi|445681670|gb|ELZ34100.1| proteasome-activating nucleotidase [Halosarcina pallida JCM 14848]
Length = 409
Score = 46.6 bits (109), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 46/186 (24%), Positives = 83/186 (44%), Gaps = 20/186 (10%)
Query: 64 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 123
+ G G GK+ + V + I M+ EL GE ++L+R + AAD +
Sbjct: 190 LHGPPGTGKTMLAKAVANETDATFIKMAGSELVRKFIGEGSRLVRDLFELAAD----REP 245
Query: 124 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 183
+ I+++DA A + T T + V T+M + ++ G ++ E + II
Sbjct: 246 AVIFIDEIDAVASKR--TDSKTSGDAEVQRTMMQL-----LSEMDGFDDRGE---IRIIA 295
Query: 184 TGNDFSTLYAPLIRDGRMEKFYWAPT--REDRIGVCKGIFRNDNVAD----DDIVKLVDT 237
N F L ++R GR ++ P E R+ + + R+ NVAD +++ + +D
Sbjct: 296 ATNRFDMLDEAILRPGRFDRLIEVPNPGPEGRVKILEIHTRDMNVADGVDFEELAEELDG 355
Query: 238 FPGQSI 243
+ G I
Sbjct: 356 YSGADI 361
>gi|390342478|ref|XP_785648.3| PREDICTED: nuclear valosin-containing protein [Strongylocentrotus
purpuratus]
Length = 976
Score = 46.6 bits (109), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 76/167 (45%), Gaps = 19/167 (11%)
Query: 59 PLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADII 118
P IL + G G GK+ + + + GIN I + EL + GE + +RQ ++ A
Sbjct: 692 PGIL-LAGPPGCGKTLLAKAIANESGINFISVKGPELMNMYVGESERAVRQCFQRA---- 746
Query: 119 KKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPR 178
+ C + ++LDA R + + ++VN L ++ G+ E +
Sbjct: 747 RNSSPCVIFFDELDALCPRRSDVSDSGSSARVVNQLL---------TEMDGL---EARKQ 794
Query: 179 VPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCKGIFRN 223
V I+ N + ++R GRM+K + P+ +DRI + + I +N
Sbjct: 795 VFIMGATNRPDIIDPAVLRPGRMDKILYVGIPSNQDRIAILRTITKN 841
>gi|262067243|ref|ZP_06026855.1| ATPase, AAA family [Fusobacterium periodonticum ATCC 33693]
gi|291379036|gb|EFE86554.1| ATPase, AAA family [Fusobacterium periodonticum ATCC 33693]
Length = 523
Score = 46.6 bits (109), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 43/205 (20%), Positives = 85/205 (41%), Gaps = 26/205 (12%)
Query: 48 KNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLI 107
++ + ++ P + + G G GKS + + A + + ++ G+
Sbjct: 259 RDLLRSKGLRPPRGILLVGVPGCGKSLSAKAISASWKLPLYRLDFATVQGSYVGQS---- 314
Query: 108 RQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQL 167
Q+ ++A + C L I++++ G G + V+ +MV L
Sbjct: 315 EQQLKDALTTAENVSPCILWIDEIEKGLSGAGSSNDGGVSTRMVGQFLF----------- 363
Query: 168 PGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCKGIFRNDN 225
+ +E +V ++ T ND S L + L+R GR ++ ++ PT E+R + K R
Sbjct: 364 ---WLQESKKQVFVVATANDVSMLPSELLRRGRFDELFFIDLPTTEERYDIIKMYMRKYL 420
Query: 226 VAD------DDIVKLVDTFPGQSID 244
D D IV++ D F G ++
Sbjct: 421 SLDFTGELADRIVEMTDGFTGADLE 445
>gi|222478623|ref|YP_002564860.1| proteasome-activating nucleotidase [Halorubrum lacusprofundi ATCC
49239]
gi|222451525|gb|ACM55790.1| 26S proteasome subunit P45 family [Halorubrum lacusprofundi ATCC
49239]
Length = 405
Score = 46.6 bits (109), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 38/145 (26%), Positives = 63/145 (43%), Gaps = 14/145 (9%)
Query: 64 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 123
++G G GK+ + V + I M+ EL GE AKL+R + ++ ++ +
Sbjct: 188 LYGPPGTGKTMLAKAVANETDATFIKMAGSELVHKFIGEGAKLVRDLF----EVARENQP 243
Query: 124 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 183
L I+++DA A + T T + V T+M + L M +E V II
Sbjct: 244 AVLFIDEIDAIASKR--TDSKTSGDAEVQRTMMQL--------LSEMDGFDERGEVRIIA 293
Query: 184 TGNDFSTLYAPLIRDGRMEKFYWAP 208
N F L ++R GR ++ P
Sbjct: 294 ATNRFDMLDPAILRPGRFDRLIEVP 318
>gi|190347457|gb|EDK39727.2| conserved hypothetical protein [Meyerozyma guilliermondii ATCC
6260]
Length = 418
Score = 46.6 bits (109), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 55/225 (24%), Positives = 97/225 (43%), Gaps = 22/225 (9%)
Query: 27 NTIDGLYIAPAFMDKLVVHITKN--FMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMG 84
NTI GL + +++ KN + IK P + ++G G GK+ + V A +G
Sbjct: 162 NTIGGLTEQVRELREVIELPLKNPELFTRVGIKSPKGVLLYGPPGTGKTLLAKAVAATIG 221
Query: 85 INPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQY 144
N I A + GE A+LIR+ + A K+ C + ++++DA GR ++
Sbjct: 222 ANFIFSPASAIVDKYIGESARLIREMFAYA----KEHAPCIIFMDEVDAIGGRR--FSEG 275
Query: 145 TVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKF 204
T ++ + TLM + + G + +I+ N TL L+R GR+++
Sbjct: 276 TSADREIQRTLMELLNQMDGFDTLG--------QTKVIMATNRPDTLDPALLRAGRLDRK 327
Query: 205 YW--APTREDRIGVCK----GIFRNDNVADDDIVKLVDTFPGQSI 243
P R+ + K + + + +VK+ D F G I
Sbjct: 328 IEIGLPNEAGRLEIFKIHTSKVSKQGEFDFEAVVKMSDGFNGADI 372
>gi|254572355|ref|XP_002493287.1| Peroxisome biosynthesis protein PAS1 [Komagataella pastoris GS115]
gi|238033085|emb|CAY71108.1| Peroxisome biosynthesis protein PAS1 [Komagataella pastoris GS115]
Length = 1121
Score = 46.6 bits (109), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 69/257 (26%), Positives = 114/257 (44%), Gaps = 41/257 (15%)
Query: 15 YISQGLRTYNLDNT------IDGLYIAPAFMDKLVVHITKN---FMSLPNIKVPLILGIW 65
YI Q LR L + I GL A + + + + TK F S P +++ + ++
Sbjct: 745 YIPQSLRGVKLQKSDVRWDDIGGLRDAKSILLETLEWPTKYAPIFSSCP-LRLRSGILLY 803
Query: 66 GGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCC 125
G G GK+ V A+ G+N I + E+ + G + +R+ + A + K C
Sbjct: 804 GYPGCGKTLLASAVAAQCGLNFISIKGPEILNKYIGASEQSVRELFERA----QAAKPCI 859
Query: 126 LMINDLDAGAGRMG----GTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPI 181
L ++ D+ A + G G T V NQM+ T M+ A+ L G+Y R +
Sbjct: 860 LFFDEFDSIAPKRGHDSTGVTDRVV-NQML--TQMDGAEG-----LDGVYVLAATSRPDL 911
Query: 182 IVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCKGIFRNDNVADDDIVKLVDTFP 239
I + L+R GR++K P +DR+ + + + RN NV+ V L +
Sbjct: 912 IDSA---------LLRPGRLDKSVICDMPDFDDRLDILQSVTRNMNVSKS--VNL-SSVA 959
Query: 240 GQSIDFFGA-LRARVYD 255
G+ F GA L+A Y+
Sbjct: 960 GECSGFSGADLQALAYN 976
>gi|170034396|ref|XP_001845060.1| 26S protease regulatory subunit S10B [Culex quinquefasciatus]
gi|167875693|gb|EDS39076.1| 26S protease regulatory subunit S10B [Culex quinquefasciatus]
Length = 393
Score = 46.6 bits (109), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 44/186 (23%), Positives = 89/186 (47%), Gaps = 20/186 (10%)
Query: 64 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 123
++G G GK+ V +++ N + + + + GE A+LIR+ + A D +
Sbjct: 176 LYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIREMFNYARD----HQP 231
Query: 124 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 183
C + ++++DA GR ++ T ++ + TLM + + Q+ G + +V +I+
Sbjct: 232 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGF---DSLGQVKMIM 281
Query: 184 TGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCK----GIFRNDNVADDDIVKLVDT 237
N TL L+R GR+++ P + R+ + K I ++ ++ + +VKL D
Sbjct: 282 ATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLEILKIHAGPIAKHGDIDYEAVVKLSDN 341
Query: 238 FPGQSI 243
F G +
Sbjct: 342 FNGADL 347
>gi|358342186|dbj|GAA49709.1| 26S proteasome regulatory subunit T6, partial [Clonorchis sinensis]
Length = 666
Score = 46.6 bits (109), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 48/186 (25%), Positives = 84/186 (45%), Gaps = 25/186 (13%)
Query: 64 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRY---REAADIIKK 120
++G G GK+ V I +S EL GE A+++R+ + RE A I
Sbjct: 208 LYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGARMVRELFVMAREHAPSI-- 265
Query: 121 GKMCCLMINDLDA-GAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRV 179
+ ++++D+ G+ R+ ++ Q L+N QL G K+ +
Sbjct: 266 -----IFMDEVDSIGSTRVESSSGGDSEVQRTMLELLN--------QLDGFEPKQN---I 309
Query: 180 PIIVTGNDFSTLYAPLIRDGRMEKF--YWAPTREDRIGVCKGIFRNDNVADD-DIVKLVD 236
+I+ N L + L+R GR+++ + AP E R+ + K R N+ D D+ KL +
Sbjct: 310 KVIMATNRIDILDSALLRPGRIDRKIEFPAPNEEARLDILKIHSRKMNLTRDIDLRKLAE 369
Query: 237 TFPGQS 242
+ PG S
Sbjct: 370 SMPGAS 375
>gi|320583831|gb|EFW98044.1| 26S protease subunit, putative [Ogataea parapolymorpha DL-1]
Length = 422
Score = 46.6 bits (109), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 48/194 (24%), Positives = 86/194 (44%), Gaps = 20/194 (10%)
Query: 56 IKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 115
IK P + ++G G GK+ + V A +G N I A + GE A+L+R+ + A
Sbjct: 197 IKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASAIVDKYIGESARLVREMFSYA- 255
Query: 116 DIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEE 175
K+ + C + ++++DA GR ++ T ++ + TLM + + G
Sbjct: 256 ---KEHEPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLNQMDGFDYLG------ 304
Query: 176 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCK----GIFRNDNVADD 229
+ +I+ N TL L+R GR+++ P R+ + K I + +
Sbjct: 305 --QTKVIMATNRPDTLDPALLRAGRLDRKIEIPLPNESGRLEIFKIHTSKIKKQGEFDFE 362
Query: 230 DIVKLVDTFPGQSI 243
+VK+ D F G I
Sbjct: 363 ALVKMSDGFNGADI 376
>gi|304313998|ref|YP_003849145.1| cell division protein 48 [Methanothermobacter marburgensis str.
Marburg]
gi|302587457|gb|ADL57832.1| predicted cell division protein 48 [Methanothermobacter
marburgensis str. Marburg]
Length = 729
Score = 46.6 bits (109), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 52/189 (27%), Positives = 83/189 (43%), Gaps = 20/189 (10%)
Query: 56 IKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 115
IK P + + G G GK+ + V + N I + EL S GE K +R+ +R+A
Sbjct: 505 IKPPKGILLHGSPGTGKTLLAKAVANESQANFIAVKGPELLSKWVGESEKGVREVFRKA- 563
Query: 116 DIIKKGKMCCLMINDLDAGAG-RMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKE 174
++ + +++D+ A R G T V ++VN L I G+ E
Sbjct: 564 ---RQTAPTVIFFDEIDSIASVRSGSTADSGVTQRVVNQLLTEID---------GL---E 608
Query: 175 ENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCKGIFRNDNVADD-DI 231
E V +I N L L+R GR ++ P RE R+ + K ++ +ADD ++
Sbjct: 609 ELQDVAVIAATNRPDILDPALLRPGRFDRHVKVDDPDREARLAIFKVHTKDMPLADDVNL 668
Query: 232 VKLVDTFPG 240
KL D G
Sbjct: 669 EKLADKTEG 677
>gi|257387828|ref|YP_003177601.1| ATPase AAA [Halomicrobium mukohataei DSM 12286]
gi|257170135|gb|ACV47894.1| AAA family ATPase, CDC48 subfamily [Halomicrobium mukohataei DSM
12286]
Length = 740
Score = 46.6 bits (109), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 53/204 (25%), Positives = 89/204 (43%), Gaps = 27/204 (13%)
Query: 64 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 123
++G G GK+ + V + N I + +L S GE K IRQ +R+A +
Sbjct: 501 LYGPPGTGKTLMAKAVANETDANFISVRGPQLLSKWVGESEKAIRQTFRKARQVAP---- 556
Query: 124 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 183
+ ++LD+ A GG T V+ ++VN L +L G+ EE V +I
Sbjct: 557 TVIFFDELDSLAPGRGGETGSNVSERVVNQLL---------TELDGLEEMEE---VMVIG 604
Query: 184 TGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCKGIFRND-----NVADDDIVKLVD 236
N + LIR GR ++ P E R + K I +D +V+ ++ ++ D
Sbjct: 605 ATNRPDMIDPALIRSGRFDRLVMVGEPGIEGREQILK-IHTDDTPLSPDVSLRELAEMTD 663
Query: 237 TFPGQSIDFFG---ALRARVYDDE 257
+ G ++ G A+ A DD+
Sbjct: 664 GYVGSDLESIGREAAIEALREDDD 687
>gi|28175479|gb|AAH43044.1| Psmc6 protein [Mus musculus]
Length = 390
Score = 46.6 bits (109), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 46/188 (24%), Positives = 89/188 (47%), Gaps = 24/188 (12%)
Query: 64 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 123
++G G GK+ V +++ N + + + + GE A+LIR+ + A D +
Sbjct: 173 LYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIREMFNYARD----HQP 228
Query: 124 CCLMINDLDAGAGRMGGT--TQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPI 181
C + ++++DA +GG ++ T ++ + TLM + + Q+ G + RV +
Sbjct: 229 CIIFMDEIDA----IGGPRFSEGTSADREIQRTLMELLN-----QMDGF---DTLHRVKM 276
Query: 182 IVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCK----GIFRNDNVADDDIVKLV 235
I+ N TL L+R GR+++ P + R+ + K I ++ + + IVKL
Sbjct: 277 IMATNRPDTLDPALLRPGRLDRKIHIDLPNEQARLDILKIHAGPITKHGEIDYEAIVKLS 336
Query: 236 DTFPGQSI 243
D F G +
Sbjct: 337 DGFNGADL 344
>gi|356551904|ref|XP_003544312.1| PREDICTED: 26S protease regulatory subunit 10B homolog A-like
isoform 1 [Glycine max]
Length = 399
Score = 46.6 bits (109), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 46/194 (23%), Positives = 92/194 (47%), Gaps = 20/194 (10%)
Query: 56 IKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 115
IK P + ++G G GK+ + + + N + + + + GE A+LIR+ + A
Sbjct: 170 IKPPKGVLLYGPPGTGKTLLARAIASNIEANFLKVVSSAIIDKYIGESARLIREMFGYAR 229
Query: 116 DIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEE 175
D + C + ++++DA GR ++ T ++ + TLM + + QL G ++
Sbjct: 230 D----HQPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QLDGF---DQ 275
Query: 176 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCK----GIFRNDNVADD 229
+V +I+ N L L+R GR+++ P + R+ + K GI ++ + +
Sbjct: 276 LGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYE 335
Query: 230 DIVKLVDTFPGQSI 243
+VKL + F G +
Sbjct: 336 AVVKLAEGFNGADL 349
>gi|157106603|ref|XP_001649399.1| 26S protease regulatory subunit S10b [Aedes aegypti]
gi|94469214|gb|ABF18456.1| 26S proteasome regulatory complex ATPase RPT4 [Aedes aegypti]
gi|108879818|gb|EAT44043.1| AAEL004563-PA [Aedes aegypti]
Length = 393
Score = 46.6 bits (109), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 44/186 (23%), Positives = 89/186 (47%), Gaps = 20/186 (10%)
Query: 64 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 123
++G G GK+ V +++ N + + + + GE A+LIR+ + A D +
Sbjct: 176 LYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIREMFNYARD----HQP 231
Query: 124 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 183
C + ++++DA GR ++ T ++ + TLM + + Q+ G + +V +I+
Sbjct: 232 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGF---DSLGQVKMIM 281
Query: 184 TGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCK----GIFRNDNVADDDIVKLVDT 237
N TL L+R GR+++ P + R+ + K I ++ ++ + +VKL D
Sbjct: 282 ATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLEILKIHAGPIAKHGDIDYEAVVKLSDN 341
Query: 238 FPGQSI 243
F G +
Sbjct: 342 FNGADL 347
>gi|344338327|ref|ZP_08769259.1| AAA ATPase central domain protein [Thiocapsa marina 5811]
gi|343801609|gb|EGV19551.1| AAA ATPase central domain protein [Thiocapsa marina 5811]
Length = 534
Score = 46.6 bits (109), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 40/147 (27%), Positives = 65/147 (44%), Gaps = 23/147 (15%)
Query: 60 LILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIK 119
L+LG+ GG GKS + V + G+ + + G L GE K +R+ AD++
Sbjct: 271 LLLGVQGG---GKSLAAKAVAGRFGVPLLRLDFGALYDKYIGETEKNLRKAL-ATADVMS 326
Query: 120 KGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRV 179
C L I++++ G G V +++ L +A E N RV
Sbjct: 327 P---CVLWIDEIEKGVA--TGAEDDGVGRRVLGTLLTWMA--------------ERNSRV 367
Query: 180 PIIVTGNDFSTLYAPLIRDGRMEKFYW 206
+ T ND S L LIR GR+++ ++
Sbjct: 368 FLTATANDISRLPPELIRKGRIDELFF 394
>gi|428164756|gb|EKX33771.1| hypothetical protein GUITHDRAFT_81158 [Guillardia theta CCMP2712]
Length = 655
Score = 46.6 bits (109), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 47/197 (23%), Positives = 85/197 (43%), Gaps = 29/197 (14%)
Query: 43 VVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGE 102
++H K SL + P + ++G G GK+ + V + G N I + EL + GE
Sbjct: 378 ILHPQK--FSLLGLSAPTGVLLYGPPGCGKTLVAKAVARESGANFISVKGPELLNKFVGE 435
Query: 103 PAKLIRQRYREAADIIKKGKMCCLMINDLDA---GAGRMGGTTQYTVNNQMVNATLMNIA 159
+ +RQ ++ A+ C + ++LDA G GG V NQ++
Sbjct: 436 SERAVRQLFQRAS----ASAPCVVFFDELDALCPKRGGEGGVASERVVNQLLT------- 484
Query: 160 DNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVC 217
++ G+ + V +I N + A ++R GR++K + P +R+ +
Sbjct: 485 ------EMDGLNARRS---VFVIAATNRPDMIDAAMLRPGRLDKLLYVRLPKHPERLAIL 535
Query: 218 KGIFRNDNVADDDIVKL 234
+ I R + D+ VKL
Sbjct: 536 RTIARKMPI--DETVKL 550
>gi|257388390|ref|YP_003178163.1| Vesicle-fusing ATPase [Halomicrobium mukohataei DSM 12286]
gi|257170697|gb|ACV48456.1| Vesicle-fusing ATPase [Halomicrobium mukohataei DSM 12286]
Length = 703
Score = 46.6 bits (109), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 35/145 (24%), Positives = 68/145 (46%), Gaps = 18/145 (12%)
Query: 64 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 123
++G G GK+ + + G+N I ++ EL GE + +R+ + A ++
Sbjct: 491 LYGPPGTGKTLLARAIAGESGVNFIHVNGPELLDRYVGESEESVREMFERA----RQTAP 546
Query: 124 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 183
+ ++++DA AG+ G + + V+ ++V+ L +L G+ ENP + ++
Sbjct: 547 SIVFLDEIDAVAGQRGESNE--VSERVVSQLL---------TELDGIT---ENPNLVVLA 592
Query: 184 TGNDFSTLYAPLIRDGRMEKFYWAP 208
N TL L+R GR E+ P
Sbjct: 593 ATNRRETLDDALLRPGRFEQHVEVP 617
>gi|347965832|ref|XP_321726.5| AGAP001407-PA [Anopheles gambiae str. PEST]
gi|333470333|gb|EAA01092.5| AGAP001407-PA [Anopheles gambiae str. PEST]
Length = 392
Score = 46.6 bits (109), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 44/186 (23%), Positives = 89/186 (47%), Gaps = 20/186 (10%)
Query: 64 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 123
++G G GK+ V +++ N + + + + GE A+LIR+ + A D +
Sbjct: 175 LYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIREMFNYARD----HQP 230
Query: 124 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 183
C + ++++DA GR ++ T ++ + TLM + + Q+ G + +V +I+
Sbjct: 231 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGF---DSLGQVKMIM 280
Query: 184 TGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCK----GIFRNDNVADDDIVKLVDT 237
N TL L+R GR+++ P + R+ + K I ++ ++ + +VKL D
Sbjct: 281 ATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLEILKIHAAPIAKHGDIDYEAVVKLSDN 340
Query: 238 FPGQSI 243
F G +
Sbjct: 341 FNGADL 346
>gi|29825445|gb|AAO92283.1| 26S proteasome regulatory subunit [Dermacentor variabilis]
Length = 402
Score = 46.6 bits (109), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 46/186 (24%), Positives = 88/186 (47%), Gaps = 20/186 (10%)
Query: 64 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 123
++G G GK+ V +++ N + + + + GE A+LIR+ + A D +
Sbjct: 185 LYGPPGTGKTLLARAVASQIEANFLKVVSSAIVDKYIGESARLIREMFNYARD----HQP 240
Query: 124 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 183
C + ++++DA GR ++ T ++ + TLM + + Q+ G + +V II+
Sbjct: 241 CVIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGF---DSLGQVKIIM 290
Query: 184 TGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCK----GIFRNDNVADDDIVKLVDT 237
N TL L+R GR+++ P + R+ + K I ++ V + +VKL D
Sbjct: 291 ATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLDIVKIHATPITKHGEVDWEAVVKLSDG 350
Query: 238 FPGQSI 243
F G +
Sbjct: 351 FNGADL 356
>gi|384501822|gb|EIE92313.1| 26S protease regulatory subunit 10B [Rhizopus delemar RA 99-880]
Length = 395
Score = 46.6 bits (109), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 45/194 (23%), Positives = 91/194 (46%), Gaps = 20/194 (10%)
Query: 56 IKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 115
+K P + ++G G GK+ + V + + +N + + + + GE A+LIR+ + A
Sbjct: 170 VKPPKGVLLYGPPGTGKTLLAKAVASTLQVNFLKVVSSAIVDKYIGESARLIREMFGYA- 228
Query: 116 DIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEE 175
K+ + C + ++++DA GR ++ T ++ + TLM + + G
Sbjct: 229 ---KEHEPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLNQMDGFDYLG------ 277
Query: 176 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCK----GIFRNDNVADD 229
+ +I+ N TL L+R GR+++ P + R+ + K I ++ ++ +
Sbjct: 278 --QTKLIMATNRPDTLDPALLRPGRLDRKIEIPLPNEQGRLEILKIHAGNIAKHGDIDYE 335
Query: 230 DIVKLVDTFPGQSI 243
IVKL D F G +
Sbjct: 336 AIVKLSDGFNGADL 349
>gi|357627263|gb|EHJ77001.1| 26S proteasome regulatory ATPase subunit 10B [Danaus plexippus]
Length = 373
Score = 46.6 bits (109), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 45/186 (24%), Positives = 88/186 (47%), Gaps = 20/186 (10%)
Query: 64 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 123
++G G GK+ V +++ N + + + + GE A+LIR+ + A D +
Sbjct: 156 LYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIREMFNYARD----HQP 211
Query: 124 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 183
C + ++++DA GR ++ T ++ + TLM + + Q+ G + +V II+
Sbjct: 212 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGF---DSLGQVKIIM 261
Query: 184 TGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCK----GIFRNDNVADDDIVKLVDT 237
N TL L+R GR+++ P + R+ + K I ++ + + +VKL D
Sbjct: 262 ATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLEILKIHASPIAKHGEMDYEAVVKLSDA 321
Query: 238 FPGQSI 243
F G +
Sbjct: 322 FNGADL 327
>gi|335437850|ref|ZP_08560608.1| AAA family ATPase, CDC48 subfamily protein [Halorhabdus tiamatea
SARL4B]
gi|335438139|ref|ZP_08560889.1| AAA family ATPase, CDC48 subfamily protein [Halorhabdus tiamatea
SARL4B]
gi|334892828|gb|EGM31055.1| AAA family ATPase, CDC48 subfamily protein [Halorhabdus tiamatea
SARL4B]
gi|334894011|gb|EGM32219.1| AAA family ATPase, CDC48 subfamily protein [Halorhabdus tiamatea
SARL4B]
Length = 731
Score = 46.6 bits (109), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 54/211 (25%), Positives = 92/211 (43%), Gaps = 31/211 (14%)
Query: 64 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 123
++G G GK+ + V + N I + EL+S GE A+ +R+ + +A ++
Sbjct: 504 LYGPPGTGKTMLAKAVANETSSNFISVKGPELQSKWVGESAEQVREIFAKA----RENAP 559
Query: 124 CCLMINDLDAGAG-RMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPII 182
+ +++DA AG R G+ V N +V+ L +L G+ E P++
Sbjct: 560 SVVFFDEVDALAGQRQDGSDGGGVTNSIVSQLL---------TELDGLSEVE-----PVV 605
Query: 183 VTG--NDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCKGIFRNDNVADD----DIVKL 234
V G N + L+R GR ++ P +E R + + I R+ VA+D + +
Sbjct: 606 VIGATNRPKAIDEALLRPGRFDEHIKVDLPDKEGREQIFQAITRDKPVAEDVDFNQLAQE 665
Query: 235 VDTFPGQSIDFF---GALR-ARVYDDEVRKW 261
+ G ID A+ AR Y EV W
Sbjct: 666 TEGISGADIDSICREAAMEVARDYFQEVHPW 696
>gi|312373685|gb|EFR21384.1| hypothetical protein AND_17121 [Anopheles darlingi]
Length = 392
Score = 46.6 bits (109), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 44/186 (23%), Positives = 89/186 (47%), Gaps = 20/186 (10%)
Query: 64 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 123
++G G GK+ V +++ N + + + + GE A+LIR+ + A D +
Sbjct: 175 LYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIREMFNYARD----HQP 230
Query: 124 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 183
C + ++++DA GR ++ T ++ + TLM + + Q+ G + +V +I+
Sbjct: 231 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGF---DSLGQVKMIM 280
Query: 184 TGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCK----GIFRNDNVADDDIVKLVDT 237
N TL L+R GR+++ P + R+ + K I ++ ++ + +VKL D
Sbjct: 281 ATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLEILKIHAAPIAKHGDIDYEAVVKLSDN 340
Query: 238 FPGQSI 243
F G +
Sbjct: 341 FNGADL 346
>gi|77993700|gb|ABB13463.1| 26S proteasome subunit RPT6, partial [Schistosoma mansoni]
Length = 382
Score = 46.6 bits (109), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 49/186 (26%), Positives = 83/186 (44%), Gaps = 25/186 (13%)
Query: 64 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRY---REAADIIKK 120
++G G GK+ V I +S EL GE A+++R+ + RE A I
Sbjct: 164 LYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGARMVRELFVMAREHAPSI-- 221
Query: 121 GKMCCLMINDLDA-GAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRV 179
+ ++++D+ G+ R+ T Q L+N QL G K+ +
Sbjct: 222 -----IFMDEVDSIGSTRLESGTGGDSEVQRTMLELLN--------QLDGFEPKQN---I 265
Query: 180 PIIVTGNDFSTLYAPLIRDGRMEKF--YWAPTREDRIGVCKGIFRNDNVADD-DIVKLVD 236
+I+ N L + L+R GR+++ + AP E R+ + K R N+ D D+ KL +
Sbjct: 266 KVIMATNRIDILDSALLRPGRIDRKIEFPAPNEEARLDILKIHSRKMNLTRDIDLRKLAE 325
Query: 237 TFPGQS 242
+ PG S
Sbjct: 326 SMPGAS 331
>gi|388258720|ref|ZP_10135895.1| putative ATPase [Cellvibrio sp. BR]
gi|387937479|gb|EIK44035.1| putative ATPase [Cellvibrio sp. BR]
Length = 493
Score = 46.6 bits (109), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 50/194 (25%), Positives = 80/194 (41%), Gaps = 34/194 (17%)
Query: 60 LILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIK 119
L+LG+ GG GKS + V G+ + M G L + GE + REA +
Sbjct: 271 LLLGVQGG---GKSLAAKAVAGLWGLPLMRMDVGALYNKFHGETER----NLREALKLAD 323
Query: 120 KGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRV 179
C L +++++ G + G + Q + TL+ + E RV
Sbjct: 324 AMSPCVLWLDEIEKGMAQDGNDNGVS---QRLLGTLLT-------------WMAERRSRV 367
Query: 180 PIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIF------RNDNVADDDIVK 233
I+ T ND S L LIR GR+++ ++ E V + IF R + D+++
Sbjct: 368 FIVATSNDISRLPPELIRKGRLDEIFFVDLPE--AAVRQDIFAIHLRKRGCDAQQFDLLR 425
Query: 234 LVDT---FPGQSID 244
L D F G I+
Sbjct: 426 LADASDGFSGSEIE 439
>gi|260944346|ref|XP_002616471.1| conserved hypothetical protein [Clavispora lusitaniae ATCC 42720]
gi|238850120|gb|EEQ39584.1| conserved hypothetical protein [Clavispora lusitaniae ATCC 42720]
Length = 427
Score = 46.6 bits (109), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 39/148 (26%), Positives = 70/148 (47%), Gaps = 14/148 (9%)
Query: 56 IKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 115
IK P + ++G G GK+ + V A +G N I A + GE A+LIR+ + A
Sbjct: 202 IKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASAIVDKYIGESARLIREMFSYA- 260
Query: 116 DIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEE 175
K+ + C + ++++DA GR ++ T ++ + TLM + + G
Sbjct: 261 ---KEHEPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLNQMDGFDTLG------ 309
Query: 176 NPRVPIIVTGNDFSTLYAPLIRDGRMEK 203
+ +I+ N TL L+R GR+++
Sbjct: 310 --QTKVIMATNRPDTLDPALLRAGRLDR 335
>gi|346472533|gb|AEO36111.1| hypothetical protein [Amblyomma maculatum]
Length = 361
Score = 46.6 bits (109), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 46/186 (24%), Positives = 88/186 (47%), Gaps = 20/186 (10%)
Query: 64 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 123
++G G GK+ V +++ N + + + + GE A+LIR+ + A D +
Sbjct: 144 LYGPPGTGKTLLARAVASQIEANFLKVVSSAIVDKYIGESARLIREMFNYARD----HQP 199
Query: 124 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 183
C + ++++DA GR ++ T ++ + TLM + + Q+ G + +V II+
Sbjct: 200 CVIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGF---DSLGQVKIIM 249
Query: 184 TGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCK----GIFRNDNVADDDIVKLVDT 237
N TL L+R GR+++ P + R+ + K I ++ V + +VKL D
Sbjct: 250 ATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLDIVKIHAAPITKHGEVDWEAVVKLSDG 309
Query: 238 FPGQSI 243
F G +
Sbjct: 310 FNGADL 315
>gi|255580390|ref|XP_002531022.1| Transitional endoplasmic reticulum ATPase, putative [Ricinus
communis]
gi|223529397|gb|EEF31360.1| Transitional endoplasmic reticulum ATPase, putative [Ricinus
communis]
Length = 1029
Score = 46.6 bits (109), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 39/165 (23%), Positives = 69/165 (41%), Gaps = 12/165 (7%)
Query: 56 IKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 115
+K P L ++G G GK+ V + G + +++S + AGE K++R+ + EA
Sbjct: 75 LKWPRGLLLYGPPGTGKTSLVRAVVRECGAHLVVISPHSVHKAYAGESEKILREAFSEAV 134
Query: 116 DIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEE 175
GK + I+++DA R + V + + L + D TC +
Sbjct: 135 SHTLSGKPSVIFIDEIDALCPRRDARREQDVR---LASQLFALMDANTC-------SSTS 184
Query: 176 NPRVPIIVTGNDFSTLYAPLIRDGRM--EKFYWAPTREDRIGVCK 218
+V ++ + N + L R R E PT E+R + K
Sbjct: 185 LAQVVVVASTNRVDAIDPALRRSERFDAEIEVTTPTEEERFQILK 229
>gi|389586182|dbj|GAB68911.1| AAA family ATPase, partial [Plasmodium cynomolgi strain B]
Length = 801
Score = 46.6 bits (109), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 54/225 (24%), Positives = 98/225 (43%), Gaps = 24/225 (10%)
Query: 64 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 123
++G G GK+ + + +M N I + E+ + GE K +R+ + A+ K
Sbjct: 341 LYGPPGCGKTMLAKAISNEMKANFIAIKGPEILNKYVGESEKKVREIFSYASIY----KP 396
Query: 124 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 183
C + +++D+ ++++VN L ++ G+ +E V II
Sbjct: 397 CLIFFDEIDSICINRANNKAAAASDRIVNQLL---------TEMDGLSQRES---VYIIA 444
Query: 184 TGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCKGIFRNDNV-ADDDIVKLVDTFPG 240
T N + L+R GR ++ + P + RI + + + +N + AD D K+ G
Sbjct: 445 TTNRPDIIDKALLRSGRFDQLIYISLPKYQGRIDILRKLSKNMPLHADVDFAKISRLTKG 504
Query: 241 QS-IDFFGALR--ARVYDDEVRKWIS--GVGVGSIGKSLVNSKEA 280
S D +G LR A + E R I G+ S G + +S+EA
Sbjct: 505 YSGADLYGVLRESAFIALQECRDKIDLLNSGLSSGGDATQHSREA 549
>gi|384488185|gb|EIE80365.1| 26S protease regulatory subunit 10B [Rhizopus delemar RA 99-880]
Length = 396
Score = 46.6 bits (109), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 45/194 (23%), Positives = 91/194 (46%), Gaps = 20/194 (10%)
Query: 56 IKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 115
+K P + ++G G GK+ + V + + +N + + + + GE A+LIR+ + A
Sbjct: 171 VKPPKGVLLYGPPGTGKTLLAKAVASTLQVNFLKVVSSAIVDKYIGESARLIREMFGYA- 229
Query: 116 DIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEE 175
K+ + C + ++++DA GR ++ T ++ + TLM + + G
Sbjct: 230 ---KEHEPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLNQMDGFDYLG------ 278
Query: 176 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCK----GIFRNDNVADD 229
+ +I+ N TL L+R GR+++ P + R+ + K I ++ ++ +
Sbjct: 279 --QTKLIMATNRPDTLDPALLRPGRLDRKIEIPLPNEQGRLEILKIHAGHIAKHGDIDYE 336
Query: 230 DIVKLVDTFPGQSI 243
IVKL D F G +
Sbjct: 337 AIVKLSDGFNGADL 350
>gi|242398512|ref|YP_002993936.1| CDC48/VCP like protein, AAA superfamily [Thermococcus sibiricus MM
739]
gi|242264905|gb|ACS89587.1| CDC48/VCP like protein, AAA superfamily [Thermococcus sibiricus MM
739]
Length = 810
Score = 46.6 bits (109), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 52/201 (25%), Positives = 88/201 (43%), Gaps = 24/201 (11%)
Query: 50 FMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQ 109
FM++ I P + ++G G GK+ + V + N I + E+ S GE K IR+
Sbjct: 544 FMAM-GINPPKGILLYGPPGTGKTLLAKAVATESEANFIGIRGPEVLSKWVGESEKNIRE 602
Query: 110 RYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPG 169
+R+A ++ + I+++DA A R G V ++++N L
Sbjct: 603 IFRKA----RQAAPTVIFIDEIDAIAPRRGSDVNR-VTDRLINQLLTE------------ 645
Query: 170 MYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCKGIFRNDNVA 227
M EEN V +I N L L+R GR ++ AP + R+ + K RN +A
Sbjct: 646 MDGIEENSGVVVIAATNRPDILDPALLRPGRFDRIILVPAPDVKARLEIFKVHTRNVPLA 705
Query: 228 DD----DIVKLVDTFPGQSID 244
D ++ K + + G I+
Sbjct: 706 KDVNLEELAKRTEGYTGADIE 726
>gi|193629665|ref|XP_001951431.1| PREDICTED: 26S protease regulatory subunit 10B-like [Acyrthosiphon
pisum]
Length = 395
Score = 46.6 bits (109), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 45/186 (24%), Positives = 87/186 (46%), Gaps = 20/186 (10%)
Query: 64 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 123
++G G GK+ V +++ N + + + + GE A+LIR+ + A D +
Sbjct: 178 LYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIREMFNYARD----HQP 233
Query: 124 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 183
C + ++++DA GR ++ T ++ + TLM + + Q+ G + +V +I+
Sbjct: 234 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGF---DSLGQVKMIM 283
Query: 184 TGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCK----GIFRNDNVADDDIVKLVDT 237
N TL L+R GR+++ P + R+ + K I + + + IVKL D
Sbjct: 284 ATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLDILKIHAAPITKQGEIDYEAIVKLSDN 343
Query: 238 FPGQSI 243
F G +
Sbjct: 344 FNGADL 349
>gi|395504310|ref|XP_003756498.1| PREDICTED: 26S protease regulatory subunit 10B [Sarcophilus
harrisii]
Length = 387
Score = 46.6 bits (109), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 45/182 (24%), Positives = 86/182 (47%), Gaps = 20/182 (10%)
Query: 68 KGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLM 127
+G GK+ V +++ N + + + + GE A+LIR+ + A D + C +
Sbjct: 174 EGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIREMFNYARD----HQPCIIF 229
Query: 128 INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGND 187
++++DA GR ++ T ++ + TLM + + Q+ G + RV +I+ N
Sbjct: 230 MDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGF---DTLHRVKMIMATNR 279
Query: 188 FSTLYAPLIRDGRMEKFYW--APTREDRIGVCK----GIFRNDNVADDDIVKLVDTFPGQ 241
TL L+R GR+++ P + R+ + K I ++ + + IVKL D F G
Sbjct: 280 PDTLDPALLRPGRLDRKIHIDLPNEQARLDILKIHAGPITKHGEIDYEAIVKLSDGFNGA 339
Query: 242 SI 243
+
Sbjct: 340 DL 341
>gi|213402523|ref|XP_002172034.1| 26S protease regulatory subunit S10B [Schizosaccharomyces japonicus
yFS275]
gi|212000081|gb|EEB05741.1| 26S protease regulatory subunit S10B [Schizosaccharomyces japonicus
yFS275]
Length = 389
Score = 46.6 bits (109), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 44/187 (23%), Positives = 87/187 (46%), Gaps = 20/187 (10%)
Query: 56 IKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 115
IK P + ++G G GK+ V + +G+N + + + + GE A++IR+ + A
Sbjct: 164 IKPPKGVLLYGPPGTGKTLLARAVASTLGVNFLKVVSSAIVDKYIGESARIIREMFSYA- 222
Query: 116 DIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEE 175
K+ + C + ++++DA GR ++ T ++ + TLM + + G
Sbjct: 223 ---KEHEPCVIFMDEVDAIGGRR--FSEGTSADREIQRTLMELLNQMDGFDTLG------ 271
Query: 176 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRED--RIGVCK----GIFRNDNVADD 229
R +I+ N TL L+R GR+++ P + R+ + K + + ++ +
Sbjct: 272 --RTKVIMATNRPDTLDPALLRPGRLDRKIEIPLPNEVGRMEILKIHLSKVAKQGDIDYE 329
Query: 230 DIVKLVD 236
IVKL D
Sbjct: 330 AIVKLTD 336
>gi|356564312|ref|XP_003550399.1| PREDICTED: proteasome-activating nucleotidase-like [Glycine max]
Length = 833
Score = 46.6 bits (109), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 46/194 (23%), Positives = 92/194 (47%), Gaps = 20/194 (10%)
Query: 56 IKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 115
IK P + ++G G GK+ + + + N + + + + GE A+LIR+ + A
Sbjct: 604 IKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYAR 663
Query: 116 DIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEE 175
D + C + ++++DA GR ++ T ++ + TLM + + QL G ++
Sbjct: 664 D----HQPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QLDGF---DQ 709
Query: 176 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCK----GIFRNDNVADD 229
+V +I+ N L L+R GR+++ P + R+ + K GI ++ + +
Sbjct: 710 LGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYE 769
Query: 230 DIVKLVDTFPGQSI 243
+VKL + F G +
Sbjct: 770 AVVKLAEGFNGADL 783
>gi|296803659|ref|XP_002842682.1| ribosome biogenesis ATPase RIX7 [Arthroderma otae CBS 113480]
gi|238846032|gb|EEQ35694.1| ribosome biogenesis ATPase RIX7 [Arthroderma otae CBS 113480]
Length = 743
Score = 46.6 bits (109), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 47/191 (24%), Positives = 87/191 (45%), Gaps = 16/191 (8%)
Query: 42 LVVHITK-NFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNA 100
+V+ +T+ S N++ P + + G G GK+ A++G+ I +SA + SG +
Sbjct: 192 IVLPMTRPQIFSSSNVQPPRGVLLHGPPGCGKTMIANAFAAELGVPFIAISAPSIISGMS 251
Query: 101 GEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIAD 160
GE K +R + EA KK C + ++++DA + + Q + ++V L
Sbjct: 252 GESEKALRDHFEEA----KKVAPCLIFMDEIDAITPKR-ESAQREMEKRIVAQLL----- 301
Query: 161 NPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKF--YWAPTREDRIGVCK 218
TC+ + + P V ++ N +L L R GR +K P R + +
Sbjct: 302 --TCMDDLALAKTDGKP-VIVLAATNRPDSLDPALRRGGRFDKEINLTVPNEPVREQILR 358
Query: 219 GIFRNDNVADD 229
+ ++ N+ADD
Sbjct: 359 TLTKDMNLADD 369
Score = 42.0 bits (97), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 47/200 (23%), Positives = 83/200 (41%), Gaps = 19/200 (9%)
Query: 56 IKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 115
I P + +WG G GK+ + V + N I + EL + GE + +RQ + A
Sbjct: 513 ISAPTGVLLWGPPGCGKTLLAKAVANESRANFISIKGPELLNKYVGESERAVRQVFSRAR 572
Query: 116 DIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEE 175
I C + ++LDA R T + ++VN L +L G+ +
Sbjct: 573 SSIP----CVIFFDELDALVPRRDDTMS-EASARVVNTLL---------TELDGLGSSRN 618
Query: 176 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCKGIFRNDNVA-DDDIV 232
+ +I N + ++R GR+E + P R++R V + + R + + +V
Sbjct: 619 G--IYVIAATNRPDIIDPAMLRPGRLETLLFVNLPGRDERAEVLRTLIRKLPIEMTEQLV 676
Query: 233 KLVDTFPGQSIDFFGALRAR 252
+L + G S G+L R
Sbjct: 677 ELARSCEGFSGADLGSLLRR 696
>gi|21362836|sp|Q9HRW6.2|PAN1_HALSA RecName: Full=Proteasome-activating nucleotidase 1; Short=PAN 1;
AltName: Full=Proteasomal ATPase 1; AltName:
Full=Proteasome regulatory ATPase 1; AltName:
Full=Proteasome regulatory particle 1
Length = 407
Score = 46.6 bits (109), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 42/159 (26%), Positives = 69/159 (43%), Gaps = 16/159 (10%)
Query: 64 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 123
+ G G GK+ + V ++ + I M+ EL GE AKL+R ++ A D +
Sbjct: 188 LHGPPGTGKTLMAKAVASQTDASFIKMAGSELVHKFIGEGAKLVRDLFQVARD----HEP 243
Query: 124 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 183
+ I+++DA A + T T + V T+M + L M +E + II
Sbjct: 244 AVVFIDEIDAIASKR--TDSKTSGDAEVQRTMMQL--------LSEMDGFDERGDIRIIA 293
Query: 184 TGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFR 222
N F L ++R GR ++ P +G + IFR
Sbjct: 294 ATNRFDMLDRAILRPGRFDRLIEVP--HPNVGGREKIFR 330
>gi|448612828|ref|ZP_21662708.1| AAA-type ATPase (transitional ATPase-like protein) [Haloferax
mucosum ATCC BAA-1512]
gi|445739725|gb|ELZ91231.1| AAA-type ATPase (transitional ATPase-like protein) [Haloferax
mucosum ATCC BAA-1512]
Length = 726
Score = 46.6 bits (109), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 50/203 (24%), Positives = 81/203 (39%), Gaps = 36/203 (17%)
Query: 64 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 123
++G G GK+ + A+ G+N I ++ EL GE K +R+ + D ++
Sbjct: 506 LYGPPGTGKTLLARAIAAESGVNFIHVAGPELLDRYVGESEKSVREVF----DRARQAAP 561
Query: 124 CCLMINDLDAGA------GRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENP 177
L +++DA A G G T+ V+ + + N ADNP V
Sbjct: 562 SILFFDEIDALATNRDTMGSDSGVTERVVSQLLTE--MDNAADNPNLV------------ 607
Query: 178 RVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCKGIFRNDNVADD----DI 231
++ N L L+R GR+E AP E R + RN ++ D D+
Sbjct: 608 ---VLAATNRRDVLDPALLRPGRLETHVEVPAPDIEARRAILDVHIRNKPLSSDVDLNDV 664
Query: 232 VKLVDTFPGQSIDFF---GALRA 251
+D + G + ALRA
Sbjct: 665 AAHMDGYTGADVAAVCREAALRA 687
>gi|297526098|ref|YP_003668122.1| AAA family ATPase [Staphylothermus hellenicus DSM 12710]
gi|297255014|gb|ADI31223.1| AAA family ATPase, CDC48 subfamily [Staphylothermus hellenicus DSM
12710]
Length = 738
Score = 46.2 bits (108), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 55/214 (25%), Positives = 94/214 (43%), Gaps = 25/214 (11%)
Query: 56 IKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 115
IK P + ++G G GK+ + V + G N I + E+ S GE K IR+ +R+A
Sbjct: 494 IKPPRGILLYGPPGTGKTLLAKAVATESGANFIAVRGPEILSKWVGESEKAIREIFRKA- 552
Query: 116 DIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEE 175
+ + +++DA A G V ++V+ L ++ G+ N+
Sbjct: 553 ---RLYAPAVIFFDEIDAIAPARGYAFDSRVTERIVSQLL---------TEMDGI-NRLN 599
Query: 176 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRE--DRIGVCKGIFRNDNVADD---- 229
N V +I N L L+R GR +K + P + RI + K RN +A D
Sbjct: 600 N--VVVIAATNRPDILDPALLRPGRFDKLIYVPPPDLNGRIEILKIHTRNMPLAKDVDLY 657
Query: 230 DIVKLVDTFPGQSIDFF---GALRARVYDDEVRK 260
+I +L + + G ++ A+RA + E+ K
Sbjct: 658 EIARLTEGYSGADLEALVREAAMRALKENIEINK 691
>gi|195398707|ref|XP_002057962.1| GJ15827 [Drosophila virilis]
gi|194150386|gb|EDW66070.1| GJ15827 [Drosophila virilis]
Length = 397
Score = 46.2 bits (108), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 45/186 (24%), Positives = 88/186 (47%), Gaps = 20/186 (10%)
Query: 64 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 123
++G G GK+ V +++ N + + + + GE A+LIR+ + A D +
Sbjct: 180 LYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIREMFNYARD----HQP 235
Query: 124 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 183
C + ++++DA GR ++ T ++ + TLM + + Q+ G + +V +I+
Sbjct: 236 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGF---DSLGQVKMIM 285
Query: 184 TGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCK----GIFRNDNVADDDIVKLVDT 237
N TL L+R GR+++ P + R+ + K I ++ + + IVKL D
Sbjct: 286 ATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLEILKIHALKIAKHGEMDYEAIVKLSDN 345
Query: 238 FPGQSI 243
F G +
Sbjct: 346 FNGADL 351
>gi|358466313|ref|ZP_09176148.1| hypothetical protein HMPREF9093_00618 [Fusobacterium sp. oral taxon
370 str. F0437]
gi|357069173|gb|EHI79116.1| hypothetical protein HMPREF9093_00618 [Fusobacterium sp. oral taxon
370 str. F0437]
Length = 523
Score = 46.2 bits (108), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 43/205 (20%), Positives = 85/205 (41%), Gaps = 26/205 (12%)
Query: 48 KNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLI 107
++ + ++ P + + G G GKS + + A + + ++ G+
Sbjct: 259 RDLLKSKGLRPPRGILLVGVPGCGKSLSAKAISASWKLPLYRLDFATVQGSYVGQS---- 314
Query: 108 RQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQL 167
Q+ ++A + C L I++++ G G + V+ +MV L
Sbjct: 315 EQQLKDALTTAENVSPCILWIDEIEKGLSGAGSSNDGGVSTRMVGQFLF----------- 363
Query: 168 PGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCKGIFRNDN 225
+ +E +V ++ T ND S L + L+R GR ++ ++ PT E+R + K R
Sbjct: 364 ---WLQESKKQVFVVATANDVSMLPSELLRRGRFDELFFIDLPTTEERHDIIKMYMRKYL 420
Query: 226 VAD------DDIVKLVDTFPGQSID 244
D D IV++ D F G ++
Sbjct: 421 SLDFTGELADRIVEMTDGFTGADLE 445
>gi|224138416|ref|XP_002326597.1| predicted protein [Populus trichocarpa]
gi|222833919|gb|EEE72396.1| predicted protein [Populus trichocarpa]
Length = 571
Score = 46.2 bits (108), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 40/165 (24%), Positives = 72/165 (43%), Gaps = 12/165 (7%)
Query: 56 IKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 115
+K P L ++G G GK+ V + G + I++S + +AGE +++R+ + +A
Sbjct: 71 LKWPTGLLLYGPPGTGKTSLVRAVVRECGAHLIVISPHFVHRAHAGESERVLREAFSDAL 130
Query: 116 DIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEE 175
GK + I+++DA R + V LM+ A+ P+
Sbjct: 131 SHAVAGKPSVIFIDEIDALCHRRDSRREQDVRVASQLFALMD-ANKPSSTS--------- 180
Query: 176 NPRVPIIVTGNDFSTLYAPLIRDGRM--EKFYWAPTREDRIGVCK 218
+ +V +I + N + L R GR E PT E+R+ + K
Sbjct: 181 SAQVVVIASTNRVDAIDPALRRSGRFDAEIEVTTPTEEERLQILK 225
>gi|15789738|ref|NP_279562.1| proteasome-activating nucleotidase [Halobacterium sp. NRC-1]
gi|10580114|gb|AAG19042.1| ATP-dependent 26S proteinase regulatory subunit 4 homolog
[Halobacterium sp. NRC-1]
Length = 368
Score = 46.2 bits (108), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 42/159 (26%), Positives = 69/159 (43%), Gaps = 16/159 (10%)
Query: 64 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 123
+ G G GK+ + V ++ + I M+ EL GE AKL+R ++ A D +
Sbjct: 149 LHGPPGTGKTLMAKAVASQTDASFIKMAGSELVHKFIGEGAKLVRDLFQVARD----HEP 204
Query: 124 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 183
+ I+++DA A + T T + V T+M + L M +E + II
Sbjct: 205 AVVFIDEIDAIASKR--TDSKTSGDAEVQRTMMQL--------LSEMDGFDERGDIRIIA 254
Query: 184 TGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFR 222
N F L ++R GR ++ P +G + IFR
Sbjct: 255 ATNRFDMLDRAILRPGRFDRLIEVP--HPNVGGREKIFR 291
>gi|116788974|gb|ABK25069.1| unknown [Picea sitchensis]
Length = 398
Score = 46.2 bits (108), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 46/194 (23%), Positives = 92/194 (47%), Gaps = 20/194 (10%)
Query: 56 IKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 115
IK P + ++G G GK+ + + + N + + + + GE A+LIR+ + A
Sbjct: 169 IKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYAR 228
Query: 116 DIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEE 175
D + C + ++++DA GR ++ T ++ + TLM + + QL G ++
Sbjct: 229 D----HQPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QLDGF---DQ 274
Query: 176 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCK----GIFRNDNVADD 229
+V +I+ N L L+R GR+++ P + R+ + K GI ++ + +
Sbjct: 275 LGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQARMEILKIHAAGIAKHGEIDYE 334
Query: 230 DIVKLVDTFPGQSI 243
+VKL + F G +
Sbjct: 335 AVVKLAEGFNGADL 348
>gi|449469943|ref|XP_004152678.1| PREDICTED: 26S protease regulatory subunit S10B homolog B-like
[Cucumis sativus]
gi|449515750|ref|XP_004164911.1| PREDICTED: 26S protease regulatory subunit S10B homolog B-like
[Cucumis sativus]
Length = 398
Score = 46.2 bits (108), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 46/194 (23%), Positives = 91/194 (46%), Gaps = 20/194 (10%)
Query: 56 IKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 115
IK P + ++G G GK+ + + + N + + + + GE A+LIR+ + A
Sbjct: 169 IKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYAR 228
Query: 116 DIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEE 175
D + C + ++++DA GR ++ T ++ + TLM + + QL G ++
Sbjct: 229 D----HQPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QLDGF---DQ 274
Query: 176 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCK----GIFRNDNVADD 229
+V +I+ N L L+R GR+++ P + R + K GI ++ + +
Sbjct: 275 LGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRTEILKIHAAGIAKHGEIDYE 334
Query: 230 DIVKLVDTFPGQSI 243
+VKL + F G +
Sbjct: 335 AVVKLAEGFNGADL 348
>gi|50305331|ref|XP_452625.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49641758|emb|CAH01476.1| KLLA0C09592p [Kluyveromyces lactis]
Length = 434
Score = 46.2 bits (108), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 72/148 (48%), Gaps = 14/148 (9%)
Query: 56 IKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 115
IK P + ++G G GK+ + V A +G N I A + GE A++IR+ + A
Sbjct: 209 IKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVDKYIGESARIIREMFAYA- 267
Query: 116 DIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEE 175
K+ + C + ++++DA GR ++ T ++ + TLM + Q+ G N +
Sbjct: 268 ---KEHEPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMEL-----LTQMDGFDNLGQ 317
Query: 176 NPRVPIIVTGNDFSTLYAPLIRDGRMEK 203
+I+ N TL L+R GR+++
Sbjct: 318 ---TKVIMATNRPDTLDPALLRPGRLDR 342
>gi|340754488|ref|ZP_08691240.1| hypothetical protein FSAG_02050 [Fusobacterium sp. 2_1_31]
gi|229423993|gb|EEO39040.1| hypothetical protein FSAG_02050 [Fusobacterium sp. 2_1_31]
Length = 523
Score = 46.2 bits (108), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 43/205 (20%), Positives = 85/205 (41%), Gaps = 26/205 (12%)
Query: 48 KNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLI 107
K+ + ++ P + + G G GKS + + A + + ++ G+
Sbjct: 259 KDLLRSKGLRSPRGILLVGVPGCGKSLSAKAISASWKLPLYRLDFATVQGSYVGQS---- 314
Query: 108 RQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQL 167
Q+ ++A + C L I++++ G G + V+ +MV L
Sbjct: 315 EQQLKDALTTAENVSPCILWIDEIEKGLSGAGSSNDGGVSTRMVGQFLF----------- 363
Query: 168 PGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCKGIFRNDN 225
+ +E +V ++ T ND S L + L+R GR ++ ++ PT E+R + K R
Sbjct: 364 ---WLQESKKQVFVVATANDVSMLPSELLRRGRFDELFFIDLPTAEERYDIIKMYMRKYL 420
Query: 226 VAD------DDIVKLVDTFPGQSID 244
D D IV++ + F G ++
Sbjct: 421 SLDFAGELADRIVEMTEGFTGADLE 445
>gi|195036578|ref|XP_001989747.1| GH18966 [Drosophila grimshawi]
gi|193893943|gb|EDV92809.1| GH18966 [Drosophila grimshawi]
Length = 398
Score = 46.2 bits (108), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 44/186 (23%), Positives = 88/186 (47%), Gaps = 20/186 (10%)
Query: 64 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 123
++G G GK+ + ++M N + + + + GE A+LIR+ + A D +
Sbjct: 181 LYGPPGTGKTLLARAIASQMDANFLKVVSSAIVDKYIGESARLIREMFNYARD----HQP 236
Query: 124 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 183
C + ++++DA GR ++ T +++ + TLM + + Q+ G + +V II+
Sbjct: 237 CIIFMDEIDAIGGRR--FSEGTSSDREIQRTLMELLN-----QMDGF---DALGQVKIIM 286
Query: 184 TGNDFSTLYAPLIRDGRMEKFYWAPTRED--RIGVCK----GIFRNDNVADDDIVKLVDT 237
N TL L+R GR+++ P + R+ + K + + + + +VKL D
Sbjct: 287 ATNRPDTLDPALLRPGRLDRKLEIPLPNEIARLEILKIHAAPLAKRGEIDYEAVVKLSDL 346
Query: 238 FPGQSI 243
F G +
Sbjct: 347 FNGADL 352
>gi|432328549|ref|YP_007246693.1| AAA family ATPase, CDC48 subfamily [Aciduliprofundum sp. MAR08-339]
gi|432135258|gb|AGB04527.1| AAA family ATPase, CDC48 subfamily [Aciduliprofundum sp. MAR08-339]
Length = 728
Score = 46.2 bits (108), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 47/189 (24%), Positives = 79/189 (41%), Gaps = 19/189 (10%)
Query: 55 NIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREA 114
+K+P + ++G G GK+ + V + N I + E S GE K +R+ +R+A
Sbjct: 486 KVKIPKGILLYGPPGTGKTLLAKAVATESEANFISVKGPEFLSKWVGESEKAVREVFRKA 545
Query: 115 ADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKE 174
++ + I+++DA A G V ++V+ L M E
Sbjct: 546 ----RQAAPAVIFIDEIDAVAPVRGMDLGTRVTERVVSQLLTE------------MDGLE 589
Query: 175 ENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPT--REDRIGVCKGIFRNDNVADD-DI 231
E V +I N L L+R GR ++ + P R+ R + K R +A+D DI
Sbjct: 590 ELHNVTVIAATNRPDMLDPALLRPGRFDRLIYVPVPDRDARREIFKIHLRGKPLAEDVDI 649
Query: 232 VKLVDTFPG 240
L + G
Sbjct: 650 DALAERTEG 658
>gi|18977335|ref|NP_578692.1| cell division protein CDC48 [Pyrococcus furiosus DSM 3638]
gi|397651469|ref|YP_006492050.1| cell division protein CDC48 [Pyrococcus furiosus COM1]
gi|18893012|gb|AAL81087.1| cell division control protein 48, aaa family [Pyrococcus furiosus
DSM 3638]
gi|393189060|gb|AFN03758.1| cell division protein CDC48 [Pyrococcus furiosus COM1]
Length = 837
Score = 46.2 bits (108), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 48/184 (26%), Positives = 79/184 (42%), Gaps = 19/184 (10%)
Query: 48 KNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLI 107
K F L I P + ++G G GK+ + V + N I + E+ S GE K I
Sbjct: 568 KAFKRL-GISPPKGILLYGPPGTGKTLLAKAVATESQANFIAIRGPEVLSKWVGESEKRI 626
Query: 108 RQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQL 167
R+ +R+A ++ + I+++DA A GG V ++++N L
Sbjct: 627 REIFRKA----RQAAPAIIFIDEIDAIAPARGGYEGERVTDRLINQLLTE---------- 672
Query: 168 PGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCKGIFRNDN 225
M +EN V +I N + L+R GR ++ AP + R+ + K R
Sbjct: 673 --MDGIQENSGVVVIGATNRPDIIDPALLRPGRFDRLILVPAPDEKARLEIFKVHTRGMP 730
Query: 226 VADD 229
+ADD
Sbjct: 731 LADD 734
>gi|221061149|ref|XP_002262144.1| ATPase [Plasmodium knowlesi strain H]
gi|193811294|emb|CAQ42022.1| ATPase, putative [Plasmodium knowlesi strain H]
Length = 964
Score = 46.2 bits (108), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 45/195 (23%), Positives = 84/195 (43%), Gaps = 20/195 (10%)
Query: 64 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 123
++G G GK+ + + +M N I + E+ + GE K +R+ + A+ K
Sbjct: 605 LYGPPGCGKTMLAKAISNEMKANFIAIKGPEILNKYVGESEKKVREIFSYASIY----KP 660
Query: 124 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 183
C + +++D+ ++++VN L ++ G+ +E V II
Sbjct: 661 CLIFFDEIDSICINRANNKAAAASDRIVNQLL---------TEMDGLSQRES---VYIIA 708
Query: 184 TGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCKGIFRNDNVADD-DIVKLVDTFPG 240
T N + L+R GR ++ + P + RI + K + +N + DD D K+ G
Sbjct: 709 TTNRPDIIDKALLRSGRFDQLIYISLPKYQGRIDILKKLSKNMPLHDDVDFAKISRLTKG 768
Query: 241 QS-IDFFGALRARVY 254
S D +G LR +
Sbjct: 769 YSGADLYGVLRESAF 783
>gi|422314849|ref|ZP_16396300.1| hypothetical protein FPOG_00580 [Fusobacterium periodonticum D10]
gi|404593275|gb|EKA94845.1| hypothetical protein FPOG_00580 [Fusobacterium periodonticum D10]
Length = 523
Score = 46.2 bits (108), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 43/205 (20%), Positives = 85/205 (41%), Gaps = 26/205 (12%)
Query: 48 KNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLI 107
K+ + ++ P + + G G GKS + + A + + ++ G+
Sbjct: 259 KDLLRSKGLRSPRGILLVGVPGCGKSLSAKAISASWKLPLYRLDFATVQGSYVGQS---- 314
Query: 108 RQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQL 167
Q+ ++A + C L I++++ G G + V+ +MV L
Sbjct: 315 EQQLKDALTTAENVSPCILWIDEIEKGLSGAGSSNDGGVSTRMVGQFLF----------- 363
Query: 168 PGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCKGIFRNDN 225
+ +E +V ++ T ND S L + L+R GR ++ ++ PT E+R + K R
Sbjct: 364 ---WLQESKKQVFVVATANDVSMLPSELLRRGRFDELFFIDLPTAEERYDIIKMYMRKYL 420
Query: 226 VAD------DDIVKLVDTFPGQSID 244
D D IV++ + F G ++
Sbjct: 421 SLDFAGELADRIVEMTEGFTGADLE 445
>gi|448102530|ref|XP_004199824.1| Piso0_002370 [Millerozyma farinosa CBS 7064]
gi|359381246|emb|CCE81705.1| Piso0_002370 [Millerozyma farinosa CBS 7064]
Length = 415
Score = 46.2 bits (108), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 39/148 (26%), Positives = 70/148 (47%), Gaps = 14/148 (9%)
Query: 56 IKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 115
IK P + ++G G GK+ + V A +G N I A + GE A+LIR+ + A
Sbjct: 190 IKAPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVDKYIGESARLIREMFAYA- 248
Query: 116 DIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEE 175
K+ + C + ++++DA GR ++ T ++ + TLM + + G
Sbjct: 249 ---KEHEPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLNQMDGFDTLG------ 297
Query: 176 NPRVPIIVTGNDFSTLYAPLIRDGRMEK 203
+ +I+ N TL L+R GR+++
Sbjct: 298 --QTKVIMATNRPDTLDPALMRAGRLDR 323
>gi|330790315|ref|XP_003283243.1| hypothetical protein DICPUDRAFT_146878 [Dictyostelium purpureum]
gi|325086924|gb|EGC40307.1| hypothetical protein DICPUDRAFT_146878 [Dictyostelium purpureum]
Length = 828
Score = 46.2 bits (108), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 44/182 (24%), Positives = 79/182 (43%), Gaps = 20/182 (10%)
Query: 56 IKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 115
I P + ++G G GK+ + + + N I + EL + GE + +RQ ++ AA
Sbjct: 547 IDSPAGVLMYGPPGCGKTLLAKAIANECQANFISVKGPELLNKYVGESERAVRQVFQRAA 606
Query: 116 DIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEE 175
C + ++ DA A + GG ++VN L ++ G+ + E
Sbjct: 607 ----ASSPCVIFFDEFDALAPKRGGDGGNQATERVVNQLL---------TEMDGLEKRSE 653
Query: 176 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCKGIFRNDNVADDDIVK 233
V II N + + R GR++K + PT E+R+ + K + + + D +V
Sbjct: 654 ---VFIIAATNRPDIIDPAMCRPGRLDKMVYVPLPTPEERVEILKTLTQ--KIPIDPLVD 708
Query: 234 LV 235
LV
Sbjct: 709 LV 710
>gi|124485689|ref|YP_001030305.1| proteasome-activating nucleotidase [Methanocorpusculum labreanum Z]
gi|124363230|gb|ABN07038.1| 26S proteasome subunit P45 family [Methanocorpusculum labreanum Z]
Length = 429
Score = 46.2 bits (108), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 47/191 (24%), Positives = 83/191 (43%), Gaps = 21/191 (10%)
Query: 64 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 123
++G G GK+ + V G+ + M+ EL GE A+L+R + A D+ +K
Sbjct: 205 LYGPPGTGKTLIAKAVANNAGVPFLRMAGSELVHKYIGEGAQLVRDLFEMARDLAEKNNG 264
Query: 124 CCLMINDLDA-GAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPII 182
+ I+++DA G+ R T T + V TLM + ++ G N+ + I+
Sbjct: 265 VVVFIDEIDAVGSMR---TNDGTSGSAEVQRTLMQL-----LAEMDGFNNR---GNIRIM 313
Query: 183 VTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCKGIFRNDNVAD-------DDIVK 233
N L A L+R GR ++ AP R+ + K + A D++V+
Sbjct: 314 AATNRPDMLDAALLRPGRFDRLIKIPAPDNAARMQIFKVHMKKMEAAGSLSGIDYDELVR 373
Query: 234 LVDTFPGQSID 244
+ + G I+
Sbjct: 374 MTEGLTGAEIE 384
>gi|302349009|ref|YP_003816647.1| Cell division control protein 48, AAA family [Acidilobus
saccharovorans 345-15]
gi|302329421|gb|ADL19616.1| Cell division control protein 48, AAA family [Acidilobus
saccharovorans 345-15]
Length = 736
Score = 46.2 bits (108), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 49/195 (25%), Positives = 83/195 (42%), Gaps = 20/195 (10%)
Query: 64 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 123
++G G GK+ + V + G N I + E+ S GE K IR+ +R A ++
Sbjct: 508 LFGPPGTGKTMLAKAVATESGANFIAIRGPEVLSKWVGESEKAIRETFRRAREVAP---- 563
Query: 124 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 183
+ +++D+ A G + V +++VN L + V L + I+
Sbjct: 564 VVVFFDEIDSIAPARGYSFDSGVTDRIVNQLLTEMD---GIVPLSNVV---------ILA 611
Query: 184 TGNDFSTLYAPLIRDGRMEKFYWAPT--REDRIGVCKGIFRNDNVADD-DIVKLVDTFPG 240
N L L+R GR ++ + P RE R + K R +A+D DI +L D G
Sbjct: 612 ATNRPDILDPALLRPGRFDRVIYVPPPDRESRKQIFKVHLRKVPLANDVDIDRLADLTEG 671
Query: 241 QS-IDFFGALRARVY 254
+ D +R V+
Sbjct: 672 YTGADIAAVVREAVF 686
>gi|195447510|ref|XP_002071246.1| GK25687 [Drosophila willistoni]
gi|194167331|gb|EDW82232.1| GK25687 [Drosophila willistoni]
Length = 397
Score = 46.2 bits (108), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 45/186 (24%), Positives = 88/186 (47%), Gaps = 20/186 (10%)
Query: 64 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 123
++G G GK+ V +++ N + + + + GE A+LIR+ + A D +
Sbjct: 180 LYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIREMFNYARD----HQP 235
Query: 124 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 183
C + ++++DA GR ++ T ++ + TLM + + Q+ G + +V +I+
Sbjct: 236 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGF---DSLGQVKMIM 285
Query: 184 TGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCK----GIFRNDNVADDDIVKLVDT 237
N TL L+R GR+++ P + R+ + K I ++ + + IVKL D
Sbjct: 286 ATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLEILKIHALIIAKHGEIDYEAIVKLSDN 345
Query: 238 FPGQSI 243
F G +
Sbjct: 346 FNGADL 351
>gi|169235453|ref|YP_001688653.1| proteasome-activating nucleotidase [Halobacterium salinarum R1]
gi|167726519|emb|CAP13304.1| proteasome-activating nucleotidase [Halobacterium salinarum R1]
Length = 406
Score = 46.2 bits (108), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 42/159 (26%), Positives = 69/159 (43%), Gaps = 16/159 (10%)
Query: 64 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 123
+ G G GK+ + V ++ + I M+ EL GE AKL+R ++ A D +
Sbjct: 187 LHGPPGTGKTLMAKAVASQTDASFIKMAGSELVHKFIGEGAKLVRDLFQVARD----HEP 242
Query: 124 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 183
+ I+++DA A + T T + V T+M + L M +E + II
Sbjct: 243 AVVFIDEIDAIASKR--TDSKTSGDAEVQRTMMQL--------LSEMDGFDERGDIRIIA 292
Query: 184 TGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFR 222
N F L ++R GR ++ P +G + IFR
Sbjct: 293 ATNRFDMLDRAILRPGRFDRLIEVP--HPNVGGREKIFR 329
>gi|15219503|ref|NP_175120.1| AAA-type ATPase family protein [Arabidopsis thaliana]
gi|297846852|ref|XP_002891307.1| hypothetical protein ARALYDRAFT_891428 [Arabidopsis lyrata subsp.
lyrata]
gi|75336159|sp|Q9MAK9.1|PS10B_ARATH RecName: Full=26S protease regulatory subunit S10B homolog B;
AltName: Full=26S proteasome AAA-ATPase subunit RPT4b;
AltName: Full=26S proteasome subunit S10B homolog B;
AltName: Full=Regulatory particle triple-A ATPase
subunit 4b
gi|7767657|gb|AAF69154.1|AC007915_6 F27F5.8 [Arabidopsis thaliana]
gi|17065266|gb|AAL32787.1| similar to 26S proteasome AAA-ATPase subunit RPT4a [Arabidopsis
thaliana]
gi|21387177|gb|AAM47992.1| 26S proteasome AAA-ATPase subunit RPT4a-like protein [Arabidopsis
thaliana]
gi|297337149|gb|EFH67566.1| hypothetical protein ARALYDRAFT_891428 [Arabidopsis lyrata subsp.
lyrata]
gi|332193951|gb|AEE32072.1| AAA-type ATPase family protein [Arabidopsis thaliana]
Length = 399
Score = 46.2 bits (108), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 46/194 (23%), Positives = 93/194 (47%), Gaps = 20/194 (10%)
Query: 56 IKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 115
IK P + ++G G GK+ + + + N + + + + GE A+LIR+ + A
Sbjct: 170 IKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFNYA- 228
Query: 116 DIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEE 175
++ + C + ++++DA GR ++ T ++ + TLM + + QL G ++
Sbjct: 229 ---REHQPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QLDGF---DQ 275
Query: 176 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCK----GIFRNDNVADD 229
+V +I+ N L L+R GR+++ P + R+ + K GI ++ + +
Sbjct: 276 LGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHASGIAKHGEIDYE 335
Query: 230 DIVKLVDTFPGQSI 243
IVKL + F G +
Sbjct: 336 AIVKLGEGFNGADL 349
>gi|389846863|ref|YP_006349102.1| AAA-type ATPase (transitional ATPase-like protein) [Haloferax
mediterranei ATCC 33500]
gi|388244169|gb|AFK19115.1| AAA-type ATPase (transitional ATPase-like protein) [Haloferax
mediterranei ATCC 33500]
Length = 726
Score = 46.2 bits (108), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 50/203 (24%), Positives = 81/203 (39%), Gaps = 36/203 (17%)
Query: 64 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 123
+ G G GK+ + A+ G+N I ++ EL GE K +R+ + A ++
Sbjct: 506 LHGPPGTGKTLLARAIAAESGVNFIHVAGPELLDRYVGESEKSVREVFERA----RQAAP 561
Query: 124 CCLMINDLDAGA------GRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENP 177
L +++DA A G G T+ V+ + + N ADNP V
Sbjct: 562 SILFFDEIDAIATNRDSVGSDSGVTERVVSQLLTE--MDNAADNPNLV------------ 607
Query: 178 RVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCKGIFRNDNVADD----DI 231
++ N T+ L+R GR+E AP E R + RN ++ D D+
Sbjct: 608 ---VLAATNRRDTIDPALLRPGRLETHVEVPAPDIEARRAILDVHIRNKPLSSDVDLNDV 664
Query: 232 VKLVDTFPGQSIDFF---GALRA 251
+D + G + ALRA
Sbjct: 665 AAHMDGYTGADVAAVCREAALRA 687
>gi|399577842|ref|ZP_10771594.1| proteasome-activating nucleotidase [Halogranum salarium B-1]
gi|399237284|gb|EJN58216.1| proteasome-activating nucleotidase [Halogranum salarium B-1]
Length = 390
Score = 46.2 bits (108), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 42/168 (25%), Positives = 72/168 (42%), Gaps = 16/168 (9%)
Query: 64 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 123
+ G G GK+ + V + I M+ EL GE ++L+R + ++ + +
Sbjct: 172 LHGPPGTGKTMLAKAVANETDATFIKMAGSELVQKFIGEGSRLVRDLF----ELASEREP 227
Query: 124 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 183
+ I+++DA A + T T + V T+M + L M E+ + II
Sbjct: 228 AVIFIDEIDAVAAKR--TDSKTSGDAEVQRTMMQL--------LSEMDGFEDRGEIRIIA 277
Query: 184 TGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCKGIFRNDNVADD 229
N F L ++R GR ++ P E R + + RN N+ADD
Sbjct: 278 ATNRFDMLDEAILRPGRFDRLIEVPKPAVEGREQILRIHTRNMNIADD 325
>gi|367009390|ref|XP_003679196.1| hypothetical protein TDEL_0A06530 [Torulaspora delbrueckii]
gi|359746853|emb|CCE89985.1| hypothetical protein TDEL_0A06530 [Torulaspora delbrueckii]
Length = 435
Score = 46.2 bits (108), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 40/153 (26%), Positives = 73/153 (47%), Gaps = 14/153 (9%)
Query: 56 IKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 115
I+ P + ++G G GK+ + V A +G N I A + GE A++IR+ + A
Sbjct: 210 IQPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVDKYIGESARIIREMFAYA- 268
Query: 116 DIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEE 175
K+ + C + ++++DA GR ++ T ++ + TLM + Q+ G N +
Sbjct: 269 ---KEHEPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMEL-----LTQMDGFDNLGQ 318
Query: 176 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAP 208
+I+ N TL L+R GR+++ P
Sbjct: 319 T---KVIMATNRPDTLDPALLRPGRLDRKIEIP 348
>gi|227827953|ref|YP_002829733.1| ATPase AAA [Sulfolobus islandicus M.14.25]
gi|229585220|ref|YP_002843722.1| AAA ATPase [Sulfolobus islandicus M.16.27]
gi|238620179|ref|YP_002915005.1| ATPase AAA [Sulfolobus islandicus M.16.4]
gi|385773657|ref|YP_005646223.1| AAA ATPase [Sulfolobus islandicus HVE10/4]
gi|385776292|ref|YP_005648860.1| AAA ATPase [Sulfolobus islandicus REY15A]
gi|227459749|gb|ACP38435.1| AAA family ATPase, CDC48 subfamily [Sulfolobus islandicus M.14.25]
gi|228020270|gb|ACP55677.1| AAA family ATPase, CDC48 subfamily [Sulfolobus islandicus M.16.27]
gi|238381249|gb|ACR42337.1| AAA family ATPase, CDC48 subfamily [Sulfolobus islandicus M.16.4]
gi|323475040|gb|ADX85646.1| AAA family ATPase, CDC48 subfamily [Sulfolobus islandicus REY15A]
gi|323477771|gb|ADX83009.1| AAA family ATPase, CDC48 subfamily [Sulfolobus islandicus HVE10/4]
Length = 759
Score = 46.2 bits (108), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 46/212 (21%), Positives = 92/212 (43%), Gaps = 28/212 (13%)
Query: 56 IKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 115
I+ P + ++G G GK+ + V + G N I + E+ S GE K +R+ +R A
Sbjct: 497 IRPPKGILLFGPPGTGKTMLAKAVATESGANFIAVRGPEILSKWVGESEKAVREIFRRA- 555
Query: 116 DIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEE 175
++ C + +++D+ A G T V ++VN L ++ G+ +
Sbjct: 556 ---RQTAPCVIFFDEIDSIAPMRGFTHDSGVTERIVNQLLS---------EMDGIQSLN- 602
Query: 176 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGV------CKGIFRNDNVADD 229
RV +I N L L+R GR ++ + P +++ + K + + +V +
Sbjct: 603 --RVVVIAATNRPDILDPALLRPGRFDRLIYVPPPDEKARIEILKIYTKTLPIDSSVNLE 660
Query: 230 DIVKLVDTFPGQSIDFFG------ALRARVYD 255
++ K ++ + G I+ LR + Y+
Sbjct: 661 ELAKKLEGYTGADIEALARETTMKVLRQKYYE 692
>gi|192361342|ref|YP_001983115.1| putative ATPase [Cellvibrio japonicus Ueda107]
gi|190687507|gb|ACE85185.1| probable ATPase [Cellvibrio japonicus Ueda107]
Length = 507
Score = 46.2 bits (108), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 41/150 (27%), Positives = 64/150 (42%), Gaps = 29/150 (19%)
Query: 60 LILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIK 119
L+LG+ GG GKS + V G+ + M G L + GE + REA +
Sbjct: 285 LLLGVQGG---GKSLAAKAVAGLWGLPLMRMDVGSLYNKYHGETER----NLREALKLAD 337
Query: 120 KGKMCCLMINDLDAGA---GRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEEN 176
C L +++++ G G GG +Q + TL+ + E
Sbjct: 338 AMSPCVLWLDEIEKGMAQDGNDGGVSQRLL------GTLLT-------------WMAERT 378
Query: 177 PRVPIIVTGNDFSTLYAPLIRDGRMEKFYW 206
RV I+ T ND S L LIR GR+++ ++
Sbjct: 379 TRVFIVATSNDISRLPPELIRKGRLDEIFF 408
>gi|354567825|ref|ZP_08986992.1| AAA ATPase central domain protein [Fischerella sp. JSC-11]
gi|353541499|gb|EHC10966.1| AAA ATPase central domain protein [Fischerella sp. JSC-11]
Length = 504
Score = 46.2 bits (108), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 46/201 (22%), Positives = 82/201 (40%), Gaps = 30/201 (14%)
Query: 53 LPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYR 112
LP+ + L++GI +G GKS + + + + + G L +G GE R R
Sbjct: 256 LPHPRGLLLVGI---QGTGKSLTAKAIAHHWHLPLLRLDVGRLFAGLVGESES----RTR 308
Query: 113 EAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYN 172
+ + + C L I+++D +G +++ + +A
Sbjct: 309 QMIQVAEALAPCVLWIDEIDKAFSGLGSKGDAGTTSRVFGTFITWLA------------- 355
Query: 173 KEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDR---IGVCKGIFRNDNVA 227
E+ V ++ T ND L ++R GR ++ ++ PT+E+R V R N+
Sbjct: 356 -EKTSPVFVVSTANDIQALPPEMLRKGRFDEIFFVGLPTQEERKAIFNVHLSRLRAHNIK 414
Query: 228 DDDIVKLVDTFPGQSIDFFGA 248
DI +L P DF GA
Sbjct: 415 SYDIDRLAYETP----DFSGA 431
>gi|336477840|ref|YP_004616981.1| AAA ATPase [Methanosalsum zhilinae DSM 4017]
gi|335931221|gb|AEH61762.1| AAA family ATPase, CDC48 subfamily [Methanosalsum zhilinae DSM
4017]
Length = 740
Score = 46.2 bits (108), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 45/177 (25%), Positives = 79/177 (44%), Gaps = 19/177 (10%)
Query: 56 IKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 115
IK P + ++G G GK+ + V + N I + ++ S GE K IR+ +++A
Sbjct: 494 IKPPKGILLFGPPGTGKTLIAQAVANESNANFISIKGPQMLSKWVGESEKAIREMFKKAR 553
Query: 116 DIIKKGKMCCLMINDLDAGAGRMGGTTQ-YTVNNQMVNATLMNIADNPTCVQLPGMYNKE 174
+ C + +++D+ A G TT+ V ++VN L +L G+ +
Sbjct: 554 QV----SPCIIFFDEIDSIAAVRGATTEGGKVAERVVNQLL---------TELDGLETLK 600
Query: 175 ENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCKGIFRNDNVADD 229
E + +I N + L+R GR ++ AP R RI + K +N + DD
Sbjct: 601 E---IVVIAATNRPDIMDPALLRAGRFDRMVLVGAPNRSGRINIFKIHAKNIPLEDD 654
>gi|448615297|ref|ZP_21664222.1| AAA-type ATPase (transitional ATPase-like protein) [Haloferax
mediterranei ATCC 33500]
gi|445752561|gb|EMA03984.1| AAA-type ATPase (transitional ATPase-like protein) [Haloferax
mediterranei ATCC 33500]
Length = 737
Score = 46.2 bits (108), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 50/203 (24%), Positives = 81/203 (39%), Gaps = 36/203 (17%)
Query: 64 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 123
+ G G GK+ + A+ G+N I ++ EL GE K +R+ + A ++
Sbjct: 517 LHGPPGTGKTLLARAIAAESGVNFIHVAGPELLDRYVGESEKSVREVFERA----RQAAP 572
Query: 124 CCLMINDLDAGA------GRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENP 177
L +++DA A G G T+ V+ + + N ADNP V
Sbjct: 573 SILFFDEIDAIATNRDSVGSDSGVTERVVSQLLTE--MDNAADNPNLV------------ 618
Query: 178 RVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCKGIFRNDNVADD----DI 231
++ N T+ L+R GR+E AP E R + RN ++ D D+
Sbjct: 619 ---VLAATNRRDTIDPALLRPGRLETHVEVPAPDIEARRAILDVHIRNKPLSSDVDLNDV 675
Query: 232 VKLVDTFPGQSIDFF---GALRA 251
+D + G + ALRA
Sbjct: 676 AAHMDGYTGADVAAVCREAALRA 698
>gi|385302903|gb|EIF47009.1| 26s protease subunit rpt4 [Dekkera bruxellensis AWRI1499]
Length = 359
Score = 46.2 bits (108), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 46/194 (23%), Positives = 88/194 (45%), Gaps = 20/194 (10%)
Query: 56 IKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 115
IK P + ++G G GK+ + V A +G N I A + GE A+L+R+ + A
Sbjct: 134 IKQPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVDKYIGESARLVREMFSYA- 192
Query: 116 DIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEE 175
K+ + C + ++++DA GR ++ T ++ + TLM + + G
Sbjct: 193 ---KEHEPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLNQMDGFDALG------ 241
Query: 176 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRED--RIGVCK----GIFRNDNVADD 229
+ +I+ N TL L+R GR+++ P + R+ + K + + + +
Sbjct: 242 --QTKVIMATNRPDTLDPALLRAGRLDRKIEVPLPNEAGRLEIFKIHMSKVQKKGEIELE 299
Query: 230 DIVKLVDTFPGQSI 243
+V++ D F G I
Sbjct: 300 TLVRMSDGFNGADI 313
>gi|345567910|gb|EGX50812.1| hypothetical protein AOL_s00054g898 [Arthrobotrys oligospora ATCC
24927]
Length = 393
Score = 46.2 bits (108), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 53/213 (24%), Positives = 97/213 (45%), Gaps = 24/213 (11%)
Query: 56 IKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 115
IK P + ++G G GK+ V + + N + + + + GE A+LIR+ + A
Sbjct: 168 IKPPKGVLLYGPPGTGKTLLARAVASTLETNFLKVVSSAIVDKYIGESARLIREMFGYA- 226
Query: 116 DIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEE 175
K+ + C + ++++DA GR ++ T ++ + TLM + + QL G +
Sbjct: 227 ---KEHEPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QLDGF---DY 273
Query: 176 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRED--RIGVCK----GIFRNDNVADD 229
+ II+ N TL L+R GR+++ P + R+ V K G+ + + +
Sbjct: 274 LGKTKIIMATNRPDTLDPALLRAGRLDRKIEIPLPNEVGRLEVLKIHAAGVAKAGEIDYE 333
Query: 230 DIVKLVDTFPGQSIDFF----GALRARVYDDEV 258
+VK+ D F G + G R Y DE+
Sbjct: 334 GLVKMSDGFNGADLRNVVTEAGMFAIRDYRDEI 366
>gi|442753613|gb|JAA68966.1| Putative 26s proteasome regulatory complex atpase rpt4 [Ixodes
ricinus]
Length = 404
Score = 46.2 bits (108), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 46/186 (24%), Positives = 87/186 (46%), Gaps = 20/186 (10%)
Query: 64 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 123
++G G GK+ V ++ N + + + + GE A+LIR+ + A D +
Sbjct: 187 LYGPPGTGKTLLARAVATQIDANFLKVVSSAIVDKYIGESARLIREMFNYARD----HQP 242
Query: 124 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 183
C + ++++DA GR ++ T ++ + TLM + + Q+ G + +V II+
Sbjct: 243 CVIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGF---DSLGQVKIIM 292
Query: 184 TGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCK----GIFRNDNVADDDIVKLVDT 237
N TL L+R GR+++ P + R+ + K I ++ V + +VKL D
Sbjct: 293 ATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLDIVKIHAAPITKHGEVDWEAVVKLSDG 352
Query: 238 FPGQSI 243
F G +
Sbjct: 353 FNGADL 358
>gi|428300919|ref|YP_007139225.1| AAA ATPase [Calothrix sp. PCC 6303]
gi|428237463|gb|AFZ03253.1| AAA ATPase central domain protein [Calothrix sp. PCC 6303]
Length = 502
Score = 46.2 bits (108), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 45/201 (22%), Positives = 84/201 (41%), Gaps = 30/201 (14%)
Query: 53 LPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYR 112
LP+ + L++GI +G GKS + + + + + G L +G GE R R
Sbjct: 256 LPHPRGLLLVGI---QGTGKSLSAKAIAHNWHLPLLRLDVGRLFAGLVGES----ESRTR 308
Query: 113 EAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYN 172
+ + + C L I+++D +G N++ + +A
Sbjct: 309 QMIQVAEALAPCILWIDEIDKSFAGLGSKGDAGTTNRVFGTFITWLA------------- 355
Query: 173 KEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCK---GIFRNDNVA 227
E+ V ++ T ND L ++R GR ++ ++ PT+ +R + + R+ N+
Sbjct: 356 -EKTSPVFVVATANDIQALPPEMLRKGRFDEIFFIGLPTQVERKAIFEVHLSRLRSHNLK 414
Query: 228 DDDIVKLVDTFPGQSIDFFGA 248
+ DI +L P DF GA
Sbjct: 415 NYDIDRLAYETP----DFSGA 431
>gi|63054416|ref|NP_587809.2| 19S proteasome regulatory subunit Rpt4 (predicted)
[Schizosaccharomyces pombe 972h-]
gi|46397658|sp|O74445.2|PRS10_SCHPO RecName: Full=Probable 26S protease subunit rpt4
gi|157310490|emb|CAA20682.2| 19S proteasome regulatory subunit Rpt4 (predicted)
[Schizosaccharomyces pombe]
Length = 388
Score = 46.2 bits (108), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 38/153 (24%), Positives = 72/153 (47%), Gaps = 14/153 (9%)
Query: 56 IKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 115
IK P + ++G G GK+ V A +G+N + + + + GE A++IR+ + A
Sbjct: 163 IKPPKGVLLYGPPGTGKTLLARAVAASLGVNFLKVVSSAIVDKYIGESARIIREMFGYA- 221
Query: 116 DIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEE 175
K+ + C + ++++DA GR ++ T ++ + TLM + + G
Sbjct: 222 ---KEHEPCVIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLNQMDGFDYLG------ 270
Query: 176 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAP 208
+ II+ N TL L+R GR+++ P
Sbjct: 271 --QTKIIMATNRPDTLDPALLRPGRLDRKIEIP 301
>gi|328352696|emb|CCA39094.1| peroxin-1 [Komagataella pastoris CBS 7435]
Length = 1131
Score = 46.2 bits (108), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 69/257 (26%), Positives = 114/257 (44%), Gaps = 41/257 (15%)
Query: 15 YISQGLRTYNLDNT------IDGLYIAPAFMDKLVVHITKN---FMSLPNIKVPLILGIW 65
YI Q LR L + I GL A + + + + TK F S P +++ + ++
Sbjct: 755 YIPQSLRGVKLQKSDVRWDDIGGLRDAKSILLETLEWPTKYAPIFSSCP-LRLRSGILLY 813
Query: 66 GGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCC 125
G G GK+ V A+ G+N I + E+ + G + +R+ + A + K C
Sbjct: 814 GYPGCGKTLLASAVAAQCGLNFISIKGPEILNKYIGASEQSVRELFERA----QAAKPCI 869
Query: 126 LMINDLDAGAGRMG----GTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPI 181
L ++ D+ A + G G T V NQM+ T M+ A+ L G+Y R +
Sbjct: 870 LFFDEFDSIAPKRGHDSTGVTDRVV-NQML--TQMDGAEG-----LDGVYVLAATSRPDL 921
Query: 182 IVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCKGIFRNDNVADDDIVKLVDTFP 239
I + L+R GR++K P +DR+ + + + RN NV+ V L +
Sbjct: 922 IDSA---------LLRPGRLDKSVICDMPDFDDRLDILQSVTRNMNVSKS--VNL-SSVA 969
Query: 240 GQSIDFFGA-LRARVYD 255
G+ F GA L+A Y+
Sbjct: 970 GECSGFSGADLQALAYN 986
>gi|227830675|ref|YP_002832455.1| AAA ATPase [Sulfolobus islandicus L.S.2.15]
gi|229579582|ref|YP_002837981.1| AAA ATPase [Sulfolobus islandicus Y.G.57.14]
gi|284998202|ref|YP_003419969.1| ATPase AAA [Sulfolobus islandicus L.D.8.5]
gi|227457123|gb|ACP35810.1| AAA family ATPase, CDC48 subfamily [Sulfolobus islandicus L.S.2.15]
gi|228010297|gb|ACP46059.1| AAA family ATPase, CDC48 subfamily [Sulfolobus islandicus
Y.G.57.14]
gi|284446097|gb|ADB87599.1| AAA family ATPase, CDC48 subfamily [Sulfolobus islandicus L.D.8.5]
Length = 759
Score = 46.2 bits (108), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 48/212 (22%), Positives = 93/212 (43%), Gaps = 28/212 (13%)
Query: 56 IKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 115
I+ P + ++G G GK+ + V + G N I + E+ S GE K +R+ +R A
Sbjct: 497 IRPPKGILLFGPPGTGKTMLAKAVATESGANFIAVRGPEILSKWVGESEKAVREIFRRA- 555
Query: 116 DIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEE 175
++ C + +++D+ A G T V ++VN L ++ G+ +
Sbjct: 556 ---RQTAPCVIFFDEIDSIAPMRGFTHDSGVTERIVNQLLS---------EMDGIQSLN- 602
Query: 176 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRED--RIGVCKGIFR----NDNVADD 229
RV +I N L L+R GR ++ + P ++ RI + K + + +V +
Sbjct: 603 --RVVVIAATNRPDILDPALLRPGRFDRLIYVPPPDEKARIEILKIYTKTLPIDSSVNLE 660
Query: 230 DIVKLVDTFPGQSIDFFG------ALRARVYD 255
++ K ++ + G I+ LR + Y+
Sbjct: 661 ELAKKLEGYTGADIEALARETTMKVLRQKYYE 692
>gi|365986426|ref|XP_003670045.1| hypothetical protein NDAI_0D04890 [Naumovozyma dairenensis CBS 421]
gi|343768814|emb|CCD24802.1| hypothetical protein NDAI_0D04890 [Naumovozyma dairenensis CBS 421]
Length = 870
Score = 46.2 bits (108), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 52/190 (27%), Positives = 82/190 (43%), Gaps = 23/190 (12%)
Query: 64 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 123
+ G G GK+ + ++ + I +SA + SG +GE K IR+ + EA K
Sbjct: 263 LHGPPGCGKTSIANALAGELKVPFISISAPSVVSGMSGESEKKIRELFEEA----KALAP 318
Query: 124 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 183
C + +++DA + G Q + ++V A L+ D T Q G P+IV
Sbjct: 319 CLMFFDEIDAITPKRDGGAQREMERRIV-AQLLTSMDELTMEQTNGK---------PVIV 368
Query: 184 TG--NDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCKGIFRNDNV-ADDDIVKLVDTF 238
G N +L A L R GR ++ P R+ + K + +N + D +KL
Sbjct: 369 IGATNRPDSLDAALRRAGRFDREICLNVPNEVSRLHILKKMSQNLKIDGSIDFLKLAKLT 428
Query: 239 PGQSIDFFGA 248
PG F GA
Sbjct: 429 PG----FVGA 434
Score = 40.0 bits (92), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 45/180 (25%), Positives = 79/180 (43%), Gaps = 25/180 (13%)
Query: 56 IKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 115
I P + +WG G GK+ + V + N I + EL + GE + IRQ + A
Sbjct: 597 ISAPAGVLLWGPPGCGKTLLAKAVANESRANFISIKGPELLNKYVGESERAIRQVFTRA- 655
Query: 116 DIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEE 175
+ C + ++LDA R T+ ++++VN L +L G+
Sbjct: 656 ---RASVPCVIFFDELDALVPRR-DTSLSESSSRVVNTLL---------TELDGL----- 697
Query: 176 NPRVPIIVTG--NDFSTLYAPLIRDGRMEK--FYWAPTREDRIGVCKGIFRNDN--VADD 229
N R I V G N + ++R GR++K F P ++++ + + R++ +ADD
Sbjct: 698 NDRRGIFVVGATNRPDMIDPAMLRPGRLDKTLFIELPNYDEKLDIITTLARSNGTPLADD 757
>gi|198415591|ref|XP_002129627.1| PREDICTED: similar to GJ15827 [Ciona intestinalis]
Length = 388
Score = 46.2 bits (108), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 44/186 (23%), Positives = 88/186 (47%), Gaps = 20/186 (10%)
Query: 64 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 123
++G G GK+ V +++ N + + + + GE A+LIR+ + A D +
Sbjct: 171 LYGPPGTGKTLLARAVSSQLDANFLKVVSSSIVDKYIGESARLIREMFNYARD----HQP 226
Query: 124 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 183
C + ++++DA GR ++ T ++ + TLM + + Q+ G + +V +I+
Sbjct: 227 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGF---DTLGQVKMIM 276
Query: 184 TGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCK----GIFRNDNVADDDIVKLVDT 237
N TL L+R GR+++ P + R+ + K I ++ + + +VKL D
Sbjct: 277 ATNRPDTLDPALLRPGRLDRKIRIDLPNEQGRMDILKIHAAPITKHGEIDYEAVVKLSDQ 336
Query: 238 FPGQSI 243
F G +
Sbjct: 337 FNGADL 342
>gi|330930220|ref|XP_003302946.1| hypothetical protein PTT_14943 [Pyrenophora teres f. teres 0-1]
gi|311321413|gb|EFQ88982.1| hypothetical protein PTT_14943 [Pyrenophora teres f. teres 0-1]
Length = 744
Score = 46.2 bits (108), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 40/170 (23%), Positives = 73/170 (42%), Gaps = 19/170 (11%)
Query: 56 IKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 115
I P + +WG G GK+ + V A+ N I + EL + GE + +RQ + A
Sbjct: 513 ISAPTGVLLWGPPGCGKTLLAKAVAAESKANFISVKGPELLNKYVGESERALRQVFMRAR 572
Query: 116 DIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEE 175
+ C + ++LDA + T + + ++VN L +L G+ +E
Sbjct: 573 SSVP----CVIFFDELDALVPKR-STELHEASARVVNTLL---------TELDGLSMREG 618
Query: 176 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCKGIFRN 223
+ +I N + ++R GR+E + P E+R+ + K + R
Sbjct: 619 ---IYLIAATNRPEMIDEAMLRPGRLETLLYVELPKPEERVDILKALIRQ 665
>gi|1172019|sp|P46463.1|PEX1_PICPA RecName: Full=Peroxisome biosynthesis protein PAS1; AltName:
Full=Peroxin-1
gi|537420|emb|CAA85450.1| PAS1 [Komagataella pastoris]
Length = 1157
Score = 46.2 bits (108), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 69/257 (26%), Positives = 114/257 (44%), Gaps = 41/257 (15%)
Query: 15 YISQGLRTYNLDNT------IDGLYIAPAFMDKLVVHITKN---FMSLPNIKVPLILGIW 65
YI Q LR L + I GL A + + + + TK F S P +++ + ++
Sbjct: 781 YIPQSLRGVKLQKSDVRWDDIGGLRDAKSILLETLEWPTKYAPIFSSCP-LRLRSGILLY 839
Query: 66 GGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCC 125
G G GK+ V A+ G+N I + E+ + G + +R+ + A + K C
Sbjct: 840 GYPGCGKTLLASAVAAQCGLNFISIKGPEILNKYIGPSEQSVRELFERA----QAAKPCI 895
Query: 126 LMINDLDAGAGRMG----GTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPI 181
L ++ D+ A + G G T V NQM+ T M+ A+ L G+Y R +
Sbjct: 896 LFFDEFDSIAPKRGHDSTGVTDRVV-NQML--TQMDGAEG-----LDGVYVLAATSRPDL 947
Query: 182 IVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCKGIFRNDNVADDDIVKLVDTFP 239
I + L+R GR++K P +DR+ + + + RN NV+ V L +
Sbjct: 948 IDSA---------LLRPGRLDKSVICDMPDFDDRLDILQSVTRNMNVSKS--VNL-SSVA 995
Query: 240 GQSIDFFGA-LRARVYD 255
G+ F GA L+A Y+
Sbjct: 996 GECSGFSGADLQALAYN 1012
>gi|332158940|ref|YP_004424219.1| cell division control protein [Pyrococcus sp. NA2]
gi|331034403|gb|AEC52215.1| cell division control protein [Pyrococcus sp. NA2]
Length = 840
Score = 46.2 bits (108), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 38/150 (25%), Positives = 67/150 (44%), Gaps = 16/150 (10%)
Query: 64 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 123
++G G GK+ + V + N I + E+ S GE K IR+ +R+A ++
Sbjct: 586 LYGPPGTGKTLLAKAVATESQANFIAIRGPEVLSKWVGESEKRIREIFRKA----RQAAP 641
Query: 124 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 183
+ I+++DA A G T V ++++N L ++ G+ EN V +I
Sbjct: 642 AIIFIDEIDAIAPARGTTEGERVTDRIINQLL---------TEMDGLV---ENSGVVVIA 689
Query: 184 TGNDFSTLYAPLIRDGRMEKFYWAPTREDR 213
N L L+R GR ++ P ++R
Sbjct: 690 ATNRPDILDPALLRPGRFDRLILVPAPDER 719
>gi|159472777|ref|XP_001694521.1| predicted protein [Chlamydomonas reinhardtii]
gi|158276745|gb|EDP02516.1| predicted protein [Chlamydomonas reinhardtii]
Length = 580
Score = 46.2 bits (108), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 43/168 (25%), Positives = 72/168 (42%), Gaps = 19/168 (11%)
Query: 64 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 123
++G G GK+ + V + G N I + EL + GE + +RQ + A +
Sbjct: 352 LYGPPGCGKTLVAKAVANESGANFISIKGPELLNKYVGESERAVRQLFARA----RAAHP 407
Query: 124 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 183
C L ++LDA A R G T NNQ + N ++ G+ +++ + I+
Sbjct: 408 CVLFFDELDALAPRRG-----TDNNQAAERVV-----NQLLTEMDGVDSRQG---LFIVA 454
Query: 184 TGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCKGIFRNDNVADD 229
N + L+R GR+EK + P +DR + K R + D
Sbjct: 455 ATNRPDMIDPALLRPGRLEKVLYVPLPPPQDRAAILKAQVRKTPLEPD 502
>gi|242767242|ref|XP_002341331.1| AAA family ATPase/60S ribosome export protein Rix7, putative
[Talaromyces stipitatus ATCC 10500]
gi|218724527|gb|EED23944.1| AAA family ATPase/60S ribosome export protein Rix7, putative
[Talaromyces stipitatus ATCC 10500]
Length = 740
Score = 46.2 bits (108), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 71/302 (23%), Positives = 128/302 (42%), Gaps = 37/302 (12%)
Query: 40 DKLVVHITK-NFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESG 98
D +++ +T+ + ++ P + + G G GK+ A +G+ I +SA + SG
Sbjct: 188 DLIILPMTRPQIFTSSKVQPPRGVLLHGPPGCGKTMLANAFAADLGVPFISISAPSVVSG 247
Query: 99 NAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNI 158
+GE K +R+ + EA KK C + I+++DA + + Q + ++V L
Sbjct: 248 MSGESEKALREHFDEA----KKVAPCLIFIDEIDAITPKR-ESAQREMEKRIVAQLL--- 299
Query: 159 ADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKF--YWAPTREDRIGV 216
TC+ + P V ++ N +L L R GR +K P+ R +
Sbjct: 300 ----TCMDDLALEKTNGKP-VIVLAATNRPDSLDPALRRGGRFDKEINLTVPSEPVREQI 354
Query: 217 CKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISGVGVGSIGKSLVN 276
+ + R +ADD + T ++ F GA ++ +S G +I + L
Sbjct: 355 LRTLTRKMQLADDLDFQ---TLAKRTAGFVGA--------DLNDLVSTAGAAAIKRYLEL 403
Query: 277 SKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAALG-EANEDAIQSGN 335
K A T E+ M +E G E VK ++ K+ EA +G E N + + +
Sbjct: 404 LK--ANTGEE--MDIE-----GETEQDLTEKVKEIRRLIKHAKEAPMGQETNPVLVSNAD 454
Query: 336 FY 337
F+
Sbjct: 455 FF 456
Score = 38.5 bits (88), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 46/200 (23%), Positives = 83/200 (41%), Gaps = 19/200 (9%)
Query: 56 IKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 115
I P + +WG G GK+ + V + N I + EL + GE + +RQ + A
Sbjct: 511 ITAPTGVLLWGPPGCGKTLLAKAVANESRANFISIKGPELLNKYVGESERAVRQVFVRAR 570
Query: 116 DIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEE 175
I C + ++LDA R + + ++VN L +L G+ + +
Sbjct: 571 SSIP----CVIFFDELDALVPRRDDALSES-SARVVNTLL---------TELDGLGSNRQ 616
Query: 176 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCKGIFRNDNVA-DDDIV 232
+ II N + ++R GR+E + P +R + + + RN + +D +
Sbjct: 617 G--IYIIAATNRPDIIDPAMLRPGRLETLLFVNLPGPSERAEILETLVRNLPIEFNDQMR 674
Query: 233 KLVDTFPGQSIDFFGALRAR 252
L ++ G S G+L R
Sbjct: 675 TLAESCEGYSGADIGSLLRR 694
>gi|384251463|gb|EIE24941.1| AAA-domain-containing protein [Coccomyxa subellipsoidea C-169]
Length = 605
Score = 46.2 bits (108), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 46/199 (23%), Positives = 83/199 (41%), Gaps = 22/199 (11%)
Query: 44 VHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEP 103
+ + F +L + P + ++G G GK+ + V G N + + EL + GE
Sbjct: 334 IKYPERFAAL-GLAAPTGVLLYGPPGCGKTLVAKAVANDSGANFMSIKGPELLNKYVGES 392
Query: 104 AKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPT 163
+ +RQ + A + C L ++LDA A R G + + + V L + T
Sbjct: 393 ERAVRQLFARA----RAAGPCVLFFDELDALAPRRGSDVSQS-SERCVKKLLSRLYYGRT 447
Query: 164 CVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCKGIF 221
G+Y +I N + + L+R GR++K + P E R+ + + +
Sbjct: 448 -----GVY---------LIAATNRPDIIDSALLRPGRLDKLLYVPLPAPEGRVAILQALT 493
Query: 222 RNDNVADDDIVKLVDTFPG 240
R +A D ++ V PG
Sbjct: 494 RATPLAADVDLRAVGLSPG 512
Score = 45.8 bits (107), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 49/195 (25%), Positives = 91/195 (46%), Gaps = 19/195 (9%)
Query: 64 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 123
+ G G GK+ + + G+ + +SA E+ +G +GE +RQ ++EAA +
Sbjct: 61 LHGPPGCGKTALANAIANECGVPFLRISAPEIVAGVSGESEAKVRQLFQEAASLAP---- 116
Query: 124 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLM---NIADNPTCVQLPGMYNKEENPRVP 180
C + I+++DA A + T Q + ++V L ++++ P G + + R+P
Sbjct: 117 CIIFIDEIDAIAAKR-ETAQREMERRIVAQMLTCMDDLSEQPLAGGTGGGTERGDPARLP 175
Query: 181 --IIVTG--NDFSTLYAPLIRDGRMEK--FYWAPTREDRIGVCKGIFRNDNV-ADDDIVK 233
++V G N +L A L R GR ++ P++E R + + + R + D D +
Sbjct: 176 KHVVVIGATNRPDSLDAALRRAGRFDREIALGIPSQEARAKILQVLARRLRLDGDFDFAQ 235
Query: 234 LVDTFPGQSIDFFGA 248
+ PG F GA
Sbjct: 236 VAVKTPG----FVGA 246
>gi|385680830|ref|ZP_10054758.1| ATPase [Amycolatopsis sp. ATCC 39116]
Length = 745
Score = 46.2 bits (108), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 38/169 (22%), Positives = 74/169 (43%), Gaps = 20/169 (11%)
Query: 64 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 123
++G G GK+F + +N + EL GE + +R+ +R+AAD
Sbjct: 523 LYGPPGGGKTFLVRALAGTGALNVFAVKGAELLDKWVGESERAVRELFRKAAD----ASP 578
Query: 124 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 183
+ ++++DA A R G + V++++V A L + + E R +++
Sbjct: 579 SLVFLDEIDALAPRRGQSGDSGVSDRVVAALLTEL-------------DGVEPMRDVVVL 625
Query: 184 TGNDFSTLYAP-LIRDGRMEKFYWAPT--REDRIGVCKGIFRNDNVADD 229
+ L P L+R GR+E+ + P + R + + R+ +A D
Sbjct: 626 GATNRPELVDPALLRPGRLERLVYVPPPDAQARADILRATARHTPLASD 674
>gi|229581753|ref|YP_002840152.1| AAA ATPase [Sulfolobus islandicus Y.N.15.51]
gi|228012469|gb|ACP48230.1| AAA family ATPase, CDC48 subfamily [Sulfolobus islandicus
Y.N.15.51]
Length = 759
Score = 46.2 bits (108), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 46/212 (21%), Positives = 92/212 (43%), Gaps = 28/212 (13%)
Query: 56 IKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 115
I+ P + ++G G GK+ + V + G N I + E+ S GE K +R+ +R A
Sbjct: 497 IRPPKGILLFGPPGTGKTMLAKAVATESGANFIAVRGPEILSKWVGESEKAVREIFRRA- 555
Query: 116 DIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEE 175
++ C + +++D+ A G T V ++VN L ++ G+ +
Sbjct: 556 ---RQTAPCVIFFDEIDSIAPMRGFTHDSGVTERIVNQLLS---------EMDGIQSLN- 602
Query: 176 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGV------CKGIFRNDNVADD 229
RV +I N L L+R GR ++ + P +++ + K + + +V +
Sbjct: 603 --RVVVIAATNRPDILDPALLRPGRFDRLIYVPPPDEKARIEILKIYTKTLPIDSSVNLE 660
Query: 230 DIVKLVDTFPGQSIDFFG------ALRARVYD 255
++ K ++ + G I+ LR + Y+
Sbjct: 661 ELAKKLEGYTGADIEALARETTMKVLRQKYYE 692
>gi|448593337|ref|ZP_21652335.1| proteasome-activating nucleotidase [Haloferax elongans ATCC
BAA-1513]
gi|445730245|gb|ELZ81835.1| proteasome-activating nucleotidase [Haloferax elongans ATCC
BAA-1513]
Length = 412
Score = 46.2 bits (108), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 46/186 (24%), Positives = 81/186 (43%), Gaps = 20/186 (10%)
Query: 64 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 123
++G G GK+ + V + + I M+ EL GE A+L+R ++ AA + +
Sbjct: 191 LYGPPGTGKTMLAKAVANETNASFIKMAGSELVQKFIGEGARLVRDLFKLAA----EREP 246
Query: 124 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 183
+ I+++DA A + T T + V T+M + L M ++ + II
Sbjct: 247 VIIFIDEIDAVASKR--TDSKTSGDAEVQRTMMQL--------LSEMDGFDDRGEIRIIA 296
Query: 184 TGNDFSTLYAPLIRDGRMEKFYWAPTR--EDRIGVCKGIFRNDNVAD----DDIVKLVDT 237
N F L ++R GR ++ P E R + R+ NVAD D + + +D
Sbjct: 297 ATNRFDMLDEAILRPGRFDRLIEVPKPDVEGRRRILDIHTRDMNVADGVDFDALAEELDD 356
Query: 238 FPGQSI 243
+ G +
Sbjct: 357 YSGADV 362
>gi|448373709|ref|ZP_21557738.1| Vesicle-fusing ATPase [Halovivax asiaticus JCM 14624]
gi|445661424|gb|ELZ14209.1| Vesicle-fusing ATPase [Halovivax asiaticus JCM 14624]
Length = 690
Score = 46.2 bits (108), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 36/154 (23%), Positives = 66/154 (42%), Gaps = 18/154 (11%)
Query: 55 NIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREA 114
N P + ++G G GK+ + + +N + + E+ GE K IR+ + A
Sbjct: 467 NTDPPAGVLLYGPPGTGKTLLARALAGETDVNFVQVDGPEVLDRYVGESEKAIRKLFERA 526
Query: 115 ADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKE 174
++ + I+++DA GR G + + V ++V+ L +L GM
Sbjct: 527 ----RQSAPSIIFIDEIDALVGRRGES--HEVTERVVSQLL---------TELDGMR--- 568
Query: 175 ENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAP 208
ENP + ++ N L L+R GR++ P
Sbjct: 569 ENPNLVVLAATNRMDDLDPALLRPGRLDTHVLVP 602
>gi|390600180|gb|EIN09575.1| 26S proteasome regulatory complex ATPase RPT4 [Punctularia
strigosozonata HHB-11173 SS5]
Length = 448
Score = 46.2 bits (108), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 47/194 (24%), Positives = 91/194 (46%), Gaps = 20/194 (10%)
Query: 56 IKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 115
IK P + ++G G GK+ V A + N + + + + GE A+++R+ + A
Sbjct: 175 IKPPKGVLLYGPPGTGKTLLARAVAATLQTNFLKVVSSAIVDKYIGESARVVREMFGYAR 234
Query: 116 DIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEE 175
D + C + ++++DA GR ++ T ++ + TLM + + Q+ G +
Sbjct: 235 D----HEPCVIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGF---DS 280
Query: 176 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCK----GIFRNDNVADD 229
RV +I+ N TL L+R GR+++ P + R+ + K + ++ + +
Sbjct: 281 LGRVKLIMATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLEILKIHAAPVNKSGEIDYE 340
Query: 230 DIVKLVDTFPGQSI 243
IVKL D F G +
Sbjct: 341 AIVKLSDGFNGADL 354
>gi|448398882|ref|ZP_21570237.1| proteasome-activating nucleotidase [Haloterrigena limicola JCM
13563]
gi|445670355|gb|ELZ22957.1| proteasome-activating nucleotidase [Haloterrigena limicola JCM
13563]
Length = 410
Score = 45.8 bits (107), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 42/168 (25%), Positives = 74/168 (44%), Gaps = 16/168 (9%)
Query: 64 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 123
++G G GK+ + V + I M+ EL GE ++L+R + ++ ++ +
Sbjct: 191 LYGPPGTGKTMLAKAVAHETDATFIKMAGSELVRKFIGEGSRLVRDLF----EMAREREP 246
Query: 124 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 183
+ I+++DA A R T T + V T+M + L M E + II
Sbjct: 247 AIIFIDEIDAIATRR--TESKTSGDAEVQRTMMQL--------LSEMDGFEARGEIRIIA 296
Query: 184 TGNDFSTLYAPLIRDGRMEKFYWAPTRED--RIGVCKGIFRNDNVADD 229
N F L ++R GR ++ P ++ R + + R+ NVADD
Sbjct: 297 ATNRFDMLDRAILRPGRFDRLIEVPEPDESGREQILEIHTRDMNVADD 344
>gi|1478008|gb|AAB36380.1| gibberellin A-binding protein, GABP=47 kda
ribulose-1,5-bisphosphate carboxylase/oxygenase activase
homolog [Oryza sativa=rice, leaves, Peptide, 56 aa]
Length = 56
Score = 45.8 bits (107), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 21/21 (100%), Positives = 21/21 (100%)
Query: 96 ESGNAGEPAKLIRQRYREAAD 116
ESGNAGEPAKLIRQRYREAAD
Sbjct: 23 ESGNAGEPAKLIRQRYREAAD 43
>gi|403223916|dbj|BAM42046.1| metallopeptidase [Theileria orientalis strain Shintoku]
Length = 680
Score = 45.8 bits (107), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 60/243 (24%), Positives = 98/243 (40%), Gaps = 34/243 (13%)
Query: 57 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAD 116
K+P + + G G GK+ + ++ G+ I S E E G A+ IR ++ A
Sbjct: 228 KLPKGILLAGRPGTGKTLLARALASEAGVPFIHASGSEFEEMFVGVGARRIRDLFKTAKT 287
Query: 117 IIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEEN 176
I C + I++LDA + T T M + N V+L G + K+E
Sbjct: 288 IAP----CIVFIDELDAVGSKRTSTDHNT----------MRMTLNQLLVELDG-FAKQEG 332
Query: 177 PRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPT--REDRIGVCKGIFRNDNVADDDI--- 231
+ ++ N +L L+R GR++K + P + R+ + K ++ + + DI
Sbjct: 333 --IVVLCATNFPESLDPALVRPGRLDKTVYIPLPDLKGRLEILK-LYASKLILSSDIDLN 389
Query: 232 VKLVDTFPGQSIDFFGALR-----------ARVYDDEVRKWISGVGVGSIGKSLVNSKEA 280
V T D F L + + V + V VG GKSLVN +E
Sbjct: 390 VVAKRTVGMTGADLFNILNTAALKCSMQGLSSITAAAVEEAFDRVVVGLKGKSLVNERER 449
Query: 281 APT 283
T
Sbjct: 450 RST 452
>gi|226467157|emb|CAX76059.1| Tat-binding protein 10 [Schistosoma japonicum]
gi|226467161|emb|CAX76061.1| Tat-binding protein 10 [Schistosoma japonicum]
gi|226467163|emb|CAX76062.1| Tat-binding protein 10 [Schistosoma japonicum]
Length = 430
Score = 45.8 bits (107), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 48/186 (25%), Positives = 83/186 (44%), Gaps = 25/186 (13%)
Query: 64 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRY---REAADIIKK 120
++G G GK+ V I +S EL GE A+++R+ + RE A I
Sbjct: 212 LYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGARMVRELFVMAREHAPSI-- 269
Query: 121 GKMCCLMINDLDA-GAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRV 179
+ ++++D+ G+ R+ T Q L+N QL G K+ +
Sbjct: 270 -----IFMDEVDSIGSTRLESGTGGDSEVQRTMLELLN--------QLDGFEPKQN---I 313
Query: 180 PIIVTGNDFSTLYAPLIRDGRMEKF--YWAPTREDRIGVCKGIFRNDNVADD-DIVKLVD 236
+I+ N L + L+R GR+++ + AP E R+ + + R N+ D D+ KL +
Sbjct: 314 KVIMATNRIDILDSALLRPGRIDRKIEFPAPNEEARLDILRIHSRKMNLTRDIDLRKLAE 373
Query: 237 TFPGQS 242
+ PG S
Sbjct: 374 SMPGAS 379
>gi|297791633|ref|XP_002863701.1| regulatory particle triple-a 4A [Arabidopsis lyrata subsp. lyrata]
gi|297309536|gb|EFH39960.1| regulatory particle triple-a 4A [Arabidopsis lyrata subsp. lyrata]
Length = 400
Score = 45.8 bits (107), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 45/188 (23%), Positives = 89/188 (47%), Gaps = 20/188 (10%)
Query: 56 IKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 115
IK P + ++G G GK+ + + + N + + + + GE A+LIR+ + A
Sbjct: 170 IKPPKCVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFNYA- 228
Query: 116 DIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEE 175
++ + C + ++++DA GR ++ T ++ + TLM + + QL G N
Sbjct: 229 ---REHQPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QLDGFDNL-- 276
Query: 176 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCK----GIFRNDNVADD 229
+V +I+ N L L+R GR+++ P + R+ + K GI ++ + +
Sbjct: 277 -GKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMDILKIHAAGIAKHGEIDYE 335
Query: 230 DIVKLVDT 237
IVKL +
Sbjct: 336 AIVKLAEV 343
>gi|433602302|ref|YP_007034671.1| Microtubule-severing ATPase [Saccharothrix espanaensis DSM 44229]
gi|407880155|emb|CCH27798.1| Microtubule-severing ATPase [Saccharothrix espanaensis DSM 44229]
Length = 745
Score = 45.8 bits (107), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 54/239 (22%), Positives = 100/239 (41%), Gaps = 26/239 (10%)
Query: 10 MSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLV--VHITKNFMSLPNIKVPLILGIWGG 67
MS+ D + G LD+ D + A + + + +F L + P L ++G
Sbjct: 469 MSTSDTLRTG--GLTLDDVGDMTEVKQALTEAALWPLQYPDSFARL-GVAPPRGLLLYGP 525
Query: 68 KGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLM 127
G GK+F + +N + + EL GE + +R+ +R AA+ +
Sbjct: 526 PGCGKTFLVRALAGSGRLNVLSVKGAELMDKFVGESERAVRELFRRAAE----AAPALVF 581
Query: 128 INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGND 187
++++DA A R G ++ V +++V A L + + E R +++ +
Sbjct: 582 LDEVDALAPRRGQSSDSGVGDRVVAALLTEL-------------DGVEPLRDVVVLGATN 628
Query: 188 FSTLYAP-LIRDGRMEKFYWAPT--REDRIGVCKGIFRNDNVADD-DIVKLVDTFPGQS 242
L P L+R GR+E+ + P + R + + RN +A D D+ L G S
Sbjct: 629 RPELIDPALLRPGRLERLVYVPPPDADARAEILRASSRNTPLAADVDLTDLAGELEGYS 687
>gi|429217576|ref|YP_007175566.1| AAA ATPase [Caldisphaera lagunensis DSM 15908]
gi|429134105|gb|AFZ71117.1| AAA family ATPase, CDC48 subfamily [Caldisphaera lagunensis DSM
15908]
Length = 734
Score = 45.8 bits (107), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 44/174 (25%), Positives = 80/174 (45%), Gaps = 19/174 (10%)
Query: 64 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 123
++G G GK+ + V + G N I + E+ S GE + IR+ +++A ++
Sbjct: 498 LFGPPGTGKTLLAKAVATESGANFITIRGPEVLSKWVGESERAIREIFKKA----RQYAP 553
Query: 124 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 183
+ +++DA A G V ++V+ L I D T +Q V +I
Sbjct: 554 VVVFFDEIDAIAALRGIDEGTRVGERIVSQLLTEI-DGITDLQ-----------NVVVIA 601
Query: 184 TGNDFSTLYAPLIRDGRMEKFYWAPTRED--RIGVCKGIFRNDNVADD-DIVKL 234
N + LIR GR+EK + P ++ R+ + + RN +ADD D++++
Sbjct: 602 ATNRPEMVDPALIRPGRLEKLVYVPPPDEKGRVEILQIHTRNVPLADDVDLIEI 655
>gi|403341369|gb|EJY69989.1| ATPase, AAA family protein [Oxytricha trifallax]
Length = 648
Score = 45.8 bits (107), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 49/220 (22%), Positives = 90/220 (40%), Gaps = 28/220 (12%)
Query: 51 MSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQR 110
L N+K P + ++G G K+ + + + G+N I + EL S G+ K IR+
Sbjct: 403 FQLMNLKPPAGILLYGPPGCSKTMIAKALATESGLNFIAIKGPELFSKYVGDTEKAIREI 462
Query: 111 YREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGM 170
+R+A + + +++DA A + G +++D C L M
Sbjct: 463 FRKA----RLSSPSIIFFDEIDAMATQRGNDE-------------TSVSDRALCQLLNEM 505
Query: 171 YNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAP-----TRED--RIGVCKGIFRN 223
E +V ++ N + L+R GR ++ + P RE RI V K + ++
Sbjct: 506 DGVESRAQVIVVAATNRLDIIDTALLRPGRFDRLIYVPLPSQQAREQILRINVGK-MQKS 564
Query: 224 DNVADDDIVKLVDTFPGQSIDFF---GALRARVYDDEVRK 260
D++ + + + D G I L+A D + K
Sbjct: 565 DDIDYEKLARETDGMSGAEIALICREAGLKALTQDMNIEK 604
>gi|397781199|ref|YP_006545672.1| proteasome regulatory subunit [Methanoculleus bourgensis MS2]
gi|396939701|emb|CCJ36956.1| proteasome regulatory subunit [Methanoculleus bourgensis MS2]
Length = 412
Score = 45.8 bits (107), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 43/169 (25%), Positives = 74/169 (43%), Gaps = 18/169 (10%)
Query: 64 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 123
+ G G GK+ V + + + EL GE A+L+R+ + D+ K+
Sbjct: 192 LHGPPGTGKTLLARAVAHHTNAHFLRVVGSELVQKYIGEGARLVRELF----DLAKQKSP 247
Query: 124 CCLMINDLDA-GAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPII 182
+ I+++DA GA R TT ++ V TLM + ++ G N+ + V II
Sbjct: 248 SIIFIDEIDAIGAHRNDSTTS---GDREVQRTLMQL-----LAEMDGFENRGD---VKII 296
Query: 183 VTGNDFSTLYAPLIRDGRMEKFYWAPT--REDRIGVCKGIFRNDNVADD 229
N L L+R GR ++ P + R+ + K +N N+ +D
Sbjct: 297 AATNRIDILDRALLRPGRFDRMIAIPLPDHQGRLAILKIHTQNMNLGED 345
>gi|388858178|emb|CCF48246.1| probable RPT4-26S proteasome regulatory subunit [Ustilago hordei]
Length = 408
Score = 45.8 bits (107), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 46/194 (23%), Positives = 88/194 (45%), Gaps = 20/194 (10%)
Query: 56 IKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 115
IK P + ++G G GK+ V + + N + + + + GE A+LIR+ + A
Sbjct: 183 IKPPKGVLLYGPPGTGKTLLARAVASTLETNFLKVVSSAIVDKYIGESARLIREMFGYA- 241
Query: 116 DIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEE 175
K+ + C + ++++DA GR ++ T ++ + TLM + + G
Sbjct: 242 ---KEHEPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLNQMDGFDYLG------ 290
Query: 176 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGV----CKGIFRNDNVADD 229
+ II+ N TL L+R GR+++ P + R+ + K + + + + +
Sbjct: 291 --KTKIIMATNRPDTLDPALMRPGRIDRKIEIPLPNEQSRLEILKIHTKPVAKKEELDYE 348
Query: 230 DIVKLVDTFPGQSI 243
IVKL D F G +
Sbjct: 349 AIVKLSDGFNGADL 362
>gi|355572388|ref|ZP_09043532.1| Proteasome-activating nucleotidase [Methanolinea tarda NOBI-1]
gi|354824762|gb|EHF09004.1| Proteasome-activating nucleotidase [Methanolinea tarda NOBI-1]
Length = 412
Score = 45.8 bits (107), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 78/180 (43%), Gaps = 22/180 (12%)
Query: 64 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 123
+ G G GK+ V + + + + EL GE A+L+R+ + D+ KK
Sbjct: 192 LHGPPGTGKTLLARAVAHETNAHFLRVVGSELVQKYIGEGARLVRELF----DLAKKKAP 247
Query: 124 CCLMINDLDA-GAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPII 182
+ I+++DA GA R TT ++ V TLM + L GM E V II
Sbjct: 248 TIIFIDEIDAVGASRTESTTS---GDREVQRTLMQL--------LAGMDGFERRGDVKII 296
Query: 183 VTGNDFSTLYAPLIRDGRMEKFYWAPTRE--DRIGVCKGIFR----NDNVADDDIVKLVD 236
N L L+R GR ++ P + R+ + K R ++NV ++I +L +
Sbjct: 297 GATNRIDILDRALLRPGRFDRIIEIPLPDILGRVAILKVHTRKMNLDENVDLEEIARLTE 356
>gi|71987364|ref|NP_001022113.1| Protein RPT-4, isoform a [Caenorhabditis elegans]
gi|21264496|sp|O17071.2|PRS10_CAEEL RecName: Full=Probable 26S protease regulatory subunit 10B;
AltName: Full=26S proteasome AAA-ATPase subunit rpt-4;
AltName: Full=Proteasome regulatory particle ATPase-like
protein 4
gi|373218666|emb|CCD62357.1| Protein RPT-4, isoform a [Caenorhabditis elegans]
Length = 406
Score = 45.8 bits (107), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 51/218 (23%), Positives = 98/218 (44%), Gaps = 29/218 (13%)
Query: 64 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 123
++G G GK+ V +++ N + + + + GE A++IR+ + A D +
Sbjct: 189 LFGPPGTGKTLLARAVASQLDCNFLKVVSSAIVDKYIGESARMIREMFNYARD----HQP 244
Query: 124 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 183
C + ++++DA GR ++ T ++ + TLM + + QL G + +V +I+
Sbjct: 245 CIVFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QLDGF---DSLGKVKVIM 294
Query: 184 TGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCK----GIFRNDNVADDDIVKLVDT 237
N TL L+R GR+++ P + R+ + K I ++ + + +VKL D
Sbjct: 295 ATNRPDTLDPALLRPGRLDRKIEIGLPNEQSRLEILKIHSNKITKHGEIDFEAVVKLSDG 354
Query: 238 FPGQSID-------FFG--ALRARVYDDEVRKWISGVG 266
F + F A R V D++ K + VG
Sbjct: 355 FSAADLRNVCTEAGMFAIRAEREFVIDEDFMKAVRKVG 392
>gi|308470578|ref|XP_003097522.1| CRE-RPT-4 protein [Caenorhabditis remanei]
gi|308240039|gb|EFO83991.1| CRE-RPT-4 protein [Caenorhabditis remanei]
Length = 492
Score = 45.8 bits (107), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 51/218 (23%), Positives = 98/218 (44%), Gaps = 29/218 (13%)
Query: 64 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 123
++G G GK+ V +++ N + + + + GE A++IR+ + A D +
Sbjct: 275 LFGPPGTGKTLLARAVASQLDCNFLKVVSSAIVDKYIGESARMIREMFNYARD----HQP 330
Query: 124 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 183
C + ++++DA GR ++ T ++ + TLM + + QL G + +V +I+
Sbjct: 331 CIVFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QLDGF---DSLGKVKVIM 380
Query: 184 TGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCK----GIFRNDNVADDDIVKLVDT 237
N TL L+R GR+++ P + R+ + K I ++ + + +VKL D
Sbjct: 381 ATNRPDTLDPALLRPGRLDRKIEIGLPNEQSRLEILKIHSNKITKHGEIDFEAVVKLSDG 440
Query: 238 FPGQSID-------FFG--ALRARVYDDEVRKWISGVG 266
F + F A R V D++ K + VG
Sbjct: 441 FSAADLRNVCTEAGMFAIRAEREFVIDEDFMKAVRKVG 478
>gi|88807547|ref|ZP_01123059.1| hypothetical protein WH7805_13388 [Synechococcus sp. WH 7805]
gi|88788761|gb|EAR19916.1| hypothetical protein WH7805_13388 [Synechococcus sp. WH 7805]
Length = 499
Score = 45.8 bits (107), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 42/166 (25%), Positives = 73/166 (43%), Gaps = 29/166 (17%)
Query: 58 VPLILGIW--GGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 115
+PL G+ G +G GKS + + + + G L SG G R
Sbjct: 258 LPLPRGVLLVGPQGTGKSLTARAIAHSWSMPLLRLDVGRLFSGLVGASEARTR------- 310
Query: 116 DIIKKGKM---CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYN 172
D+I + + C L I+++D G G++GG+ T +Q V AT++ +
Sbjct: 311 DMILRAEAMAPCVLWIDEIDKGFGQVGGSDGGT--SQRVLATVLT-------------WM 355
Query: 173 KEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGV 216
E+ V ++ T N L L+R GR ++ + P+R++R G+
Sbjct: 356 AEKRSAVFVVATANGVERLPPELLRKGRFDEIFLLDLPSRDERCGI 401
>gi|389749535|gb|EIM90706.1| AAA-domain-containing protein [Stereum hirsutum FP-91666 SS1]
Length = 785
Score = 45.8 bits (107), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 58/219 (26%), Positives = 93/219 (42%), Gaps = 18/219 (8%)
Query: 56 IKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 115
++ P + + G G GK+ + ++G+ I +SA + SG +GE K +R+ + EA
Sbjct: 139 VQPPRGVLLHGPPGCGKTMLARAIGGELGVPFIQVSAPSIVSGMSGESEKTLRETFEEA- 197
Query: 116 DIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCV-QLPGMYNKE 174
K+ C L I+++DA + + Q + ++V L TC+ +L ++K
Sbjct: 198 ---KRVAPCLLFIDEIDAITPKR-ESAQREMERRIVAQFL-------TCMDEL--SWDKT 244
Query: 175 ENPRVPIIVTGNDFSTLYAPLIRDGRM--EKFYWAPTREDRIGVCKGIFRNDNVADD-DI 231
EN V +I N L A L R GR E P E R + K + + D D
Sbjct: 245 ENKPVIVIGATNRPDALDAALRRAGRFDHEISMGVPDDEGRAQILKVLCSKLRLEGDFDF 304
Query: 232 VKLVDTFPGQSIDFFGALRARVYDDEVRKWISGVGVGSI 270
L PG AL V++ G+ GSI
Sbjct: 305 TALAKATPGYVGADLTALTGAAGIIAVKRIFRGISDGSI 343
Score = 42.0 bits (97), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 37/170 (21%), Positives = 75/170 (44%), Gaps = 19/170 (11%)
Query: 56 IKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 115
I+ P + +WG G GK+ + V ++ G N + + EL + GE + +RQ + A
Sbjct: 475 IEAPCGVLMWGPPGCGKTLLAKAVASESGANFVSVKGPELLNKYVGESERAVRQVFSRA- 533
Query: 116 DIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEE 175
+ C + ++LDA R + + + ++VN L +L G+ ++
Sbjct: 534 ---RASAPCIIFFDELDALVPRRDDSLSES-SARVVNTLL---------TELDGLDSRRG 580
Query: 176 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCKGIFRN 223
V ++ N + + R GR++K + P E+R+ + + + R
Sbjct: 581 ---VFVLAATNRPDMIDPAMCRPGRLDKLLYVDLPGAEERVEIVRTMLRK 627
>gi|34762147|ref|ZP_00143155.1| AAA family ATPase [Fusobacterium nucleatum subsp. vincentii ATCC
49256]
gi|27888224|gb|EAA25282.1| AAA family ATPase [Fusobacterium nucleatum subsp. vincentii ATCC
49256]
Length = 523
Score = 45.8 bits (107), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 42/204 (20%), Positives = 83/204 (40%), Gaps = 26/204 (12%)
Query: 49 NFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIR 108
+ + ++ P + + G G GKS + + A + + ++ G+
Sbjct: 260 DLLKAKGLRSPRGILLVGVPGCGKSLSAKAISASWKLPLYRLDFATVQGSYVGQS----E 315
Query: 109 QRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLP 168
Q+ ++A + C L I++++ G G + V+ +MV L
Sbjct: 316 QQLKDALTTAENVSPCILWIDEIEKGLSGAGSSNDGGVSTRMVGQFLF------------ 363
Query: 169 GMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCKGIFRNDNV 226
+ +E +V ++ T ND S L + L+R GR ++ ++ PT E+R + K R
Sbjct: 364 --WLQESRKQVFVVATANDVSMLPSELLRRGRFDELFFIDLPTSEERFDIIKMYMRKYLS 421
Query: 227 AD------DDIVKLVDTFPGQSID 244
D D IV + + F G ++
Sbjct: 422 LDFAGELADKIVNMTEGFTGADLE 445
>gi|256846870|ref|ZP_05552324.1| AAA family ATPase [Fusobacterium sp. 3_1_36A2]
gi|256717668|gb|EEU31227.1| AAA family ATPase [Fusobacterium sp. 3_1_36A2]
Length = 523
Score = 45.8 bits (107), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 42/204 (20%), Positives = 83/204 (40%), Gaps = 26/204 (12%)
Query: 49 NFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIR 108
+ + ++ P + + G G GKS + + A + + ++ G+
Sbjct: 260 DLLKAKGLRSPRGILLVGVPGCGKSLSAKAISASWKLPLYRLDFATVQGSYVGQS----E 315
Query: 109 QRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLP 168
Q+ ++A + C L I++++ G G + V+ +MV L
Sbjct: 316 QQLKDALTTAENVSPCILWIDEIEKGLSGAGSSNDGGVSTRMVGQFLF------------ 363
Query: 169 GMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCKGIFRNDNV 226
+ +E +V ++ T ND S L + L+R GR ++ ++ PT E+R + K R
Sbjct: 364 --WLQESRKQVFVVATANDVSMLPSELLRRGRFDELFFIDLPTSEERFDIIKMYMRKYLS 421
Query: 227 AD------DDIVKLVDTFPGQSID 244
D D IV + + F G ++
Sbjct: 422 LDFAGELADKIVNMTEGFTGADLE 445
>gi|226467155|emb|CAX76058.1| Tat-binding protein 10 [Schistosoma japonicum]
Length = 398
Score = 45.8 bits (107), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 48/186 (25%), Positives = 83/186 (44%), Gaps = 25/186 (13%)
Query: 64 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRY---REAADIIKK 120
++G G GK+ V I +S EL GE A+++R+ + RE A I
Sbjct: 180 LYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGARMVRELFVMAREHAPSI-- 237
Query: 121 GKMCCLMINDLDA-GAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRV 179
+ ++++D+ G+ R+ T Q L+N QL G K+ +
Sbjct: 238 -----IFMDEVDSIGSTRLESGTGGDSEVQRTMLELLN--------QLDGFEPKQN---I 281
Query: 180 PIIVTGNDFSTLYAPLIRDGRMEKF--YWAPTREDRIGVCKGIFRNDNVADD-DIVKLVD 236
+I+ N L + L+R GR+++ + AP E R+ + + R N+ D D+ KL +
Sbjct: 282 KVIMATNRIDILDSALLRPGRIDRKIEFPAPNEEARLDILRIHSRKMNLTRDIDLRKLAE 341
Query: 237 TFPGQS 242
+ PG S
Sbjct: 342 SMPGAS 347
>gi|189205687|ref|XP_001939178.1| ribosome biogenesis ATPase RIX7 [Pyrenophora tritici-repentis
Pt-1C-BFP]
gi|187975271|gb|EDU41897.1| ribosome biogenesis ATPase RIX7 [Pyrenophora tritici-repentis
Pt-1C-BFP]
Length = 740
Score = 45.8 bits (107), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 39/170 (22%), Positives = 72/170 (42%), Gaps = 19/170 (11%)
Query: 56 IKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 115
I P + +WG G GK+ + V A+ N I + EL + GE + +RQ + A
Sbjct: 509 ISAPTGVLLWGPPGCGKTLLAKAVAAESKANFISVKGPELLNKYVGESERALRQVFMRAR 568
Query: 116 DIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEE 175
+ C + ++LDA + + + ++VN L +L G+ +E
Sbjct: 569 SSVP----CVIFFDELDALVPKRSAEL-HEASARVVNTLL---------TELDGLSEREG 614
Query: 176 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCKGIFRN 223
+ +I N + ++R GR+E + P E+R+ + K + R
Sbjct: 615 ---IYLIAATNRPEMIDEAMLRPGRLETLLYVELPKPEERVDILKALIRQ 661
Score = 37.7 bits (86), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 42/179 (23%), Positives = 79/179 (44%), Gaps = 21/179 (11%)
Query: 57 KVPLILGIW--GGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREA 114
K+P+ GI G G GK+ C A++G+ I + + SG +GE K +R+ + +A
Sbjct: 196 KIPIPRGILLHGPPGCGKTVICRAFAAELGVPFIEILGPSVVSGMSGESEKQVREHFEKA 255
Query: 115 ADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKE 174
++ C + I+++D A + + Q + ++V L+++ + + G K
Sbjct: 256 KEVAP----CLIFIDEIDVIAPKR-DSAQSQMEKRIVAQLLISM----DSLAMEGNNGK- 305
Query: 175 ENPRVPIIVTG--NDFSTLYAPLIRDGRM--EKFYWAPTREDRIGVCKGIFRNDNVADD 229
P+IV N +L L R GR E P + R + + + R ++ D
Sbjct: 306 -----PVIVLAATNRPDSLDPALRRGGRFDTEINIGVPNEQMRRSILQALTRQPKLSPD 359
>gi|448734331|ref|ZP_21716557.1| proteasome-activating nucleotidase [Halococcus salifodinae DSM
8989]
gi|445800379|gb|EMA50734.1| proteasome-activating nucleotidase [Halococcus salifodinae DSM
8989]
Length = 404
Score = 45.8 bits (107), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 39/153 (25%), Positives = 66/153 (43%), Gaps = 14/153 (9%)
Query: 56 IKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 115
I+ P + + G G GK+ + V + I M+ EL GE AKL+R +
Sbjct: 179 IQPPSGVLLHGPPGTGKTMLAKAVANQTDATFIKMAGSELVHKFIGEGAKLVRDLF---- 234
Query: 116 DIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEE 175
++ ++ + + I+++DA A + T T + V T+M + L M EE
Sbjct: 235 EVAREHEPAVIFIDEIDAIASKR--TDSKTSGDAEVQRTMMQL--------LSEMDGFEE 284
Query: 176 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAP 208
+ II N F L ++R GR ++ P
Sbjct: 285 RGEIRIIAATNRFDMLDRAILRPGRFDRLIEVP 317
>gi|427738561|ref|YP_007058105.1| AAA ATPase [Rivularia sp. PCC 7116]
gi|427373602|gb|AFY57558.1| AAA+ family ATPase [Rivularia sp. PCC 7116]
Length = 540
Score = 45.8 bits (107), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 48/201 (23%), Positives = 87/201 (43%), Gaps = 29/201 (14%)
Query: 53 LPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYR 112
+PN K L++GI +G GKS + + + + + + G L G GE R R
Sbjct: 276 IPNPKGALLVGI---QGTGKSLSAKTIAHEWRLPLLRLDTGRLFGGIVGES----ESRVR 328
Query: 113 EAADIIKKGKMCCLMINDLDAGAGRMG-GTTQYTVNNQMVNATLMNIADNPTCVQLPGMY 171
+ + + C L ++++D G + G + ++ V +L+ +
Sbjct: 329 QMIQLTEAMAPCVLWMDEIDKAFGNISSGVDGDSGTSRRVFGSLIT-------------W 375
Query: 172 NKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APT---REDRIGVCKGIFRNDNV 226
+E+ V I+ T N+ L A L+R GR ++ ++ PT R+D + V R + V
Sbjct: 376 MQEKTSPVFIVATANNVQILPAELLRKGRFDEIFFLNLPTEAERQDILKVHIQKLRPNRV 435
Query: 227 ADDDIVKL---VDTFPGQSID 244
D D+ L + F G I+
Sbjct: 436 RDFDLTLLASRTENFSGAEIE 456
>gi|221060877|ref|XP_002262008.1| 26S proteasome regulatory subunit 7 [Plasmodium knowlesi strain H]
gi|193811158|emb|CAQ41886.1| 26S proteasome regulatory subunit 7, putative [Plasmodium knowlesi
strain H]
Length = 441
Score = 45.8 bits (107), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 39/157 (24%), Positives = 72/157 (45%), Gaps = 16/157 (10%)
Query: 64 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 123
++G G GK+ + + I + EL GE A+++R+ ++ A K K
Sbjct: 201 LYGPPGTGKTLTARAIANRTDACFICVIGSELVQKYVGEGARMVRELFQMA----KSKKA 256
Query: 124 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 183
C L I+++DA G G + + + V T++ I + QL G N+ + +++
Sbjct: 257 CILFIDEVDAIGGSRGDESAH--GDHEVQRTMLEIVN-----QLDGFDNRGN---IKVLM 306
Query: 184 TGNDFSTLYAPLIRDGRMEKF--YWAPTREDRIGVCK 218
N TL + L+R GR+++ + P E R + K
Sbjct: 307 ATNRPDTLDSALVRPGRIDRKIEFSLPDLEGRTHIFK 343
>gi|195997743|ref|XP_002108740.1| conserved hypothetical protein [Trichoplax adhaerens]
gi|190589516|gb|EDV29538.1| conserved hypothetical protein [Trichoplax adhaerens]
Length = 387
Score = 45.8 bits (107), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 43/186 (23%), Positives = 85/186 (45%), Gaps = 20/186 (10%)
Query: 64 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 123
++G G GK+ V +++ N + + + + GE A+LIR+ + A D +
Sbjct: 170 LYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIREMFAYARD----HQP 225
Query: 124 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 183
C + ++++DA GR ++ T ++ + TLM + + G +V II+
Sbjct: 226 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLNQMDGFDALG--------QVKIIM 275
Query: 184 TGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCK----GIFRNDNVADDDIVKLVDT 237
N TL L+R GR+++ P + R+ + K I ++ + + +VKL +
Sbjct: 276 ATNRPDTLDPALLRPGRLDRKIQIALPNEQARLEILKIHASPITKHGEIDYEAVVKLAEE 335
Query: 238 FPGQSI 243
F G +
Sbjct: 336 FNGADL 341
>gi|291571747|dbj|BAI94019.1| cell division protein FtsH [Arthrospira platensis NIES-39]
Length = 628
Score = 45.8 bits (107), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 47/180 (26%), Positives = 74/180 (41%), Gaps = 26/180 (14%)
Query: 57 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAD 116
K+P + + G G GK+ + V + G+ +S E G A +R +++A D
Sbjct: 199 KIPRGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKD 258
Query: 117 IIKKGKMCCLMINDLDA-----GAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMY 171
C + I+++DA GAG GG + Q +N L M
Sbjct: 259 ----NSPCLIFIDEIDAVGRQRGAGIGGGNDE---REQTLNQLLTE------------MD 299
Query: 172 NKEENPRVPIIVTGNDFSTLYAPLIRDGRMEK--FYWAPTREDRIGVCKGIFRNDNVADD 229
E NP + +I N L A L+R GR ++ P R+G+ + RN +ADD
Sbjct: 300 GFEGNPGIIVIAATNRPDVLDAALLRPGRFDRQVIVDLPGYNGRLGILQVHARNKKLADD 359
>gi|237742898|ref|ZP_04573379.1| AAA family ATPase [Fusobacterium sp. 4_1_13]
gi|421144253|ref|ZP_15604169.1| ATPase AAA [Fusobacterium nucleatum subsp. fusiforme ATCC 51190]
gi|229430546|gb|EEO40758.1| AAA family ATPase [Fusobacterium sp. 4_1_13]
gi|395489354|gb|EJG10193.1| ATPase AAA [Fusobacterium nucleatum subsp. fusiforme ATCC 51190]
Length = 523
Score = 45.8 bits (107), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 42/204 (20%), Positives = 83/204 (40%), Gaps = 26/204 (12%)
Query: 49 NFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIR 108
+ + ++ P + + G G GKS + + A + + ++ G+
Sbjct: 260 DLLKAKGLRSPRGILLVGVPGCGKSLSAKAISASWKLPLYRLDFATVQGSYVGQS----E 315
Query: 109 QRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLP 168
Q+ ++A + C L I++++ G G + V+ +MV L
Sbjct: 316 QQLKDALTTAENVSPCILWIDEIEKGLSGAGSSNDGGVSTRMVGQFLF------------ 363
Query: 169 GMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCKGIFRNDNV 226
+ +E +V ++ T ND S L + L+R GR ++ ++ PT E+R + K R
Sbjct: 364 --WLQESRKQVFVVATANDVSMLPSELLRRGRFDELFFIDLPTSEERFDIIKMYMRKYLS 421
Query: 227 AD------DDIVKLVDTFPGQSID 244
D D IV + + F G ++
Sbjct: 422 LDFAGELADKIVNMTEGFTGADLE 445
>gi|434398411|ref|YP_007132415.1| ATP-dependent metalloprotease FtsH [Stanieria cyanosphaera PCC
7437]
gi|428269508|gb|AFZ35449.1| ATP-dependent metalloprotease FtsH [Stanieria cyanosphaera PCC
7437]
Length = 647
Score = 45.8 bits (107), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 63/242 (26%), Positives = 95/242 (39%), Gaps = 39/242 (16%)
Query: 57 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAD 116
K+P + + G G GK+ + + + G+ +S E G A +R +R+A
Sbjct: 224 KIPRGMLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFRKA-- 281
Query: 117 IIKKGKMCCLMINDLDA-----GAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMY 171
K+ C + I+++DA GAG GG + Q +N L M
Sbjct: 282 --KENAPCLIFIDEIDAVGRQRGAGIGGGNDE---REQTLNQLLTE------------MD 324
Query: 172 NKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCKGIFRNDNVAD- 228
E N + +I N L + L+R GR ++ P E R+G+ + RN VA
Sbjct: 325 GFEGNAGIIVIAATNRPDVLDSALLRPGRFDRQVMVDYPDFEGRLGILEVHARNKKVAPE 384
Query: 229 ---DDIVKLVDTFPGQSIDFF----GALRARVYDD-----EVRKWISGVGVGSIGKSLVN 276
D I + F G + L AR D E+ I V G G SLV+
Sbjct: 385 ISLDAIARRTPGFSGADLANLLNEAAILTARRRKDAITMLEINDAIDRVVAGMEGASLVD 444
Query: 277 SK 278
SK
Sbjct: 445 SK 446
>gi|294784210|ref|ZP_06749505.1| AAA ATPase, central region [Fusobacterium sp. 3_1_27]
gi|294488076|gb|EFG35427.1| AAA ATPase, central region [Fusobacterium sp. 3_1_27]
Length = 523
Score = 45.8 bits (107), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 42/204 (20%), Positives = 83/204 (40%), Gaps = 26/204 (12%)
Query: 49 NFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIR 108
+ + ++ P + + G G GKS + + A + + ++ G+
Sbjct: 260 DLLKAKGLRSPRGILLVGVPGCGKSLSAKAISASWKLPLYRLDFATVQGSYVGQS----E 315
Query: 109 QRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLP 168
Q+ ++A + C L I++++ G G + V+ +MV L
Sbjct: 316 QQLKDALTTAENVSPCILWIDEIEKGLSGAGSSNDGGVSTRMVGQFLF------------ 363
Query: 169 GMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCKGIFRNDNV 226
+ +E +V ++ T ND S L + L+R GR ++ ++ PT E+R + K R
Sbjct: 364 --WLQESRKQVFVVATANDVSMLPSELLRRGRFDELFFIDLPTSEERFDIIKMYMRKYLS 421
Query: 227 AD------DDIVKLVDTFPGQSID 244
D D IV + + F G ++
Sbjct: 422 LDFAGELADKIVNMTEGFTGADLE 445
>gi|448729351|ref|ZP_21711668.1| proteasome-activating nucleotidase [Halococcus saccharolyticus DSM
5350]
gi|445795298|gb|EMA45827.1| proteasome-activating nucleotidase [Halococcus saccharolyticus DSM
5350]
Length = 404
Score = 45.8 bits (107), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 39/153 (25%), Positives = 66/153 (43%), Gaps = 14/153 (9%)
Query: 56 IKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 115
I+ P + + G G GK+ + V + I M+ EL GE AKL+R +
Sbjct: 179 IQPPSGVLLHGPPGTGKTMLAKAVANQTDATFIKMAGSELVHKFIGEGAKLVRDLF---- 234
Query: 116 DIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEE 175
++ ++ + + I+++DA A + T T + V T+M + L M EE
Sbjct: 235 EVAREHEPAVIFIDEIDAIASKR--TDSKTSGDAEVQRTMMQL--------LSEMDGFEE 284
Query: 176 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAP 208
+ II N F L ++R GR ++ P
Sbjct: 285 RGEIRIIAATNRFDMLDRAILRPGRFDRLIEVP 317
>gi|448098649|ref|XP_004198973.1| Piso0_002370 [Millerozyma farinosa CBS 7064]
gi|359380395|emb|CCE82636.1| Piso0_002370 [Millerozyma farinosa CBS 7064]
Length = 415
Score = 45.8 bits (107), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 50/194 (25%), Positives = 85/194 (43%), Gaps = 20/194 (10%)
Query: 56 IKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 115
IK P + ++G G GK+ + V A +G N I A + GE A+LIR+ + A
Sbjct: 190 IKSPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVDKYIGESARLIREMFAYA- 248
Query: 116 DIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEE 175
K+ + C + ++++DA GR ++ T ++ + TLM + + G
Sbjct: 249 ---KEHEPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLNQMDGFDTLG------ 297
Query: 176 NPRVPIIVTGNDFSTLYAPLIRDGRMEKF--YWAPTREDRIGVCK----GIFRNDNVADD 229
+ +I+ N TL L+R GR+++ P R+ V K I + +
Sbjct: 298 --QTKVIMATNRPDTLDPALMRAGRLDRKIEIALPNEAGRLDVFKIHTAKIAKKGEFDFE 355
Query: 230 DIVKLVDTFPGQSI 243
VK+ D F G I
Sbjct: 356 AAVKMSDGFNGADI 369
>gi|17945503|gb|AAL48804.1| RE23388p [Drosophila melanogaster]
Length = 397
Score = 45.8 bits (107), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 44/186 (23%), Positives = 88/186 (47%), Gaps = 20/186 (10%)
Query: 64 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 123
++G G GK+ V +++ N + + + + GE A+LIR+ + A D +
Sbjct: 180 LYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIREMFNYARD----HQP 235
Query: 124 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 183
C + ++++DA GR ++ T ++ + TLM + + Q+ G + +V +I+
Sbjct: 236 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGF---DSLGQVKMIM 285
Query: 184 TGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCK----GIFRNDNVADDDIVKLVDT 237
N +L L+R GR+++ P + R+ + K I ++ + + IVKL D
Sbjct: 286 ATNRPDSLDPALLRPGRLDRKIEIPLPNEQARLEILKIHALKIAKHGEIDYEAIVKLSDN 345
Query: 238 FPGQSI 243
F G +
Sbjct: 346 FNGADL 351
>gi|448575622|ref|ZP_21641902.1| AAA-type ATPase (transitional ATPase-like protein) [Haloferax
larsenii JCM 13917]
gi|445730563|gb|ELZ82151.1| AAA-type ATPase (transitional ATPase-like protein) [Haloferax
larsenii JCM 13917]
Length = 726
Score = 45.8 bits (107), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 51/203 (25%), Positives = 80/203 (39%), Gaps = 36/203 (17%)
Query: 64 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 123
+ G G GK+ + A+ G+N I ++ EL GE K +R+ + D ++
Sbjct: 506 LHGPPGTGKTLLARAIAAESGVNFIHVAGPELLDRYVGESEKSVREVF----DRARQAAP 561
Query: 124 CCLMINDLDAGA------GRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENP 177
L +++DA A G G T+ V+ + + N ADNP V
Sbjct: 562 SILFFDEIDALATDRDSMGSDSGVTERVVSQLLTE--MDNAADNPNLV------------ 607
Query: 178 RVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCKGIFRND----NVADDDI 231
++ N L L+R GR+E AP E R + RN ++ DD+
Sbjct: 608 ---VLAATNRRDALDPALLRPGRLETHVEVPAPDIEARRAIIDVHVRNKPLSPDIDLDDV 664
Query: 232 VKLVDTFPGQSIDFF---GALRA 251
+D F G + ALRA
Sbjct: 665 AAHMDGFSGADVAAVCREAALRA 687
>gi|71987372|ref|NP_001022114.1| Protein RPT-4, isoform b [Caenorhabditis elegans]
gi|373218667|emb|CCD62358.1| Protein RPT-4, isoform b [Caenorhabditis elegans]
Length = 398
Score = 45.8 bits (107), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 51/218 (23%), Positives = 98/218 (44%), Gaps = 29/218 (13%)
Query: 64 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 123
++G G GK+ V +++ N + + + + GE A++IR+ + A D +
Sbjct: 181 LFGPPGTGKTLLARAVASQLDCNFLKVVSSAIVDKYIGESARMIREMFNYARD----HQP 236
Query: 124 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 183
C + ++++DA GR ++ T ++ + TLM + + QL G + +V +I+
Sbjct: 237 CIVFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QLDGF---DSLGKVKVIM 286
Query: 184 TGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCK----GIFRNDNVADDDIVKLVDT 237
N TL L+R GR+++ P + R+ + K I ++ + + +VKL D
Sbjct: 287 ATNRPDTLDPALLRPGRLDRKIEIGLPNEQSRLEILKIHSNKITKHGEIDFEAVVKLSDG 346
Query: 238 FPGQSID-------FFG--ALRARVYDDEVRKWISGVG 266
F + F A R V D++ K + VG
Sbjct: 347 FSAADLRNVCTEAGMFAIRAEREFVIDEDFMKAVRKVG 384
>gi|70606569|ref|YP_255439.1| SAV protein-like [Sulfolobus acidocaldarius DSM 639]
gi|449066788|ref|YP_007433870.1| SAV protein-like protein [Sulfolobus acidocaldarius N8]
gi|449069061|ref|YP_007436142.1| SAV protein-like protein [Sulfolobus acidocaldarius Ron12/I]
gi|30088847|gb|AAP13472.1| AAA family ATPase [Sulfolobus acidocaldarius]
gi|68567217|gb|AAY80146.1| SAV protein-like [Sulfolobus acidocaldarius DSM 639]
gi|449035296|gb|AGE70722.1| SAV protein-like protein [Sulfolobus acidocaldarius N8]
gi|449037569|gb|AGE72994.1| SAV protein-like protein [Sulfolobus acidocaldarius Ron12/I]
Length = 773
Score = 45.8 bits (107), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 45/177 (25%), Positives = 81/177 (45%), Gaps = 18/177 (10%)
Query: 55 NIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREA 114
+I+ P + ++G G GK+ + V + G N I + E+ S GE K IR+ +R+A
Sbjct: 499 SIEPPKGILLFGPPGTGKTMLAKAVATESGANFIAVRGPEILSKWVGESEKAIREIFRKA 558
Query: 115 ADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKE 174
++ + +++D+ A G +T V ++VN L ++ G+ K
Sbjct: 559 ----RQAAPTVIFFDEIDSIAPIRGLSTDSGVTERIVNQLL---------AEMDGI-EKL 604
Query: 175 ENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPT--REDRIGVCKGIFRNDNVADD 229
EN V +I N L L+R GR ++ + P + R + K +N +A+D
Sbjct: 605 EN--VVVIAATNRPDILDPALLRPGRFDRLIYVPPPDKTARFEILKVHTKNVPLAED 659
>gi|384248894|gb|EIE22377.1| 26S proteasome regulatory subunit [Coccomyxa subellipsoidea C-169]
Length = 398
Score = 45.8 bits (107), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 45/194 (23%), Positives = 89/194 (45%), Gaps = 20/194 (10%)
Query: 56 IKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 115
IK P + ++G G GK+ + + + N + + + + GE A+LIR+ + A
Sbjct: 166 IKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIVDKYIGESARLIREMFGYA- 224
Query: 116 DIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEE 175
K+ + C + ++++DA GR ++ T ++ + TLM + + G
Sbjct: 225 ---KEHQPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLSQLDGFDVIG------ 273
Query: 176 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCK----GIFRNDNVADD 229
+V +I+ N L L+R GR+++ P + R + K GI ++ ++ +
Sbjct: 274 --KVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQARSEILKIHASGITKHGDIDYE 331
Query: 230 DIVKLVDTFPGQSI 243
IVKL + F G +
Sbjct: 332 AIVKLAENFNGADL 345
>gi|409730008|ref|ZP_11271619.1| proteasome-activating nucleotidase [Halococcus hamelinensis 100A6]
gi|448722313|ref|ZP_21704851.1| proteasome-activating nucleotidase [Halococcus hamelinensis 100A6]
gi|445790024|gb|EMA40697.1| proteasome-activating nucleotidase [Halococcus hamelinensis 100A6]
Length = 405
Score = 45.8 bits (107), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 46/195 (23%), Positives = 83/195 (42%), Gaps = 20/195 (10%)
Query: 56 IKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 115
I+ P + + G G GK+ + V + I M+ EL GE A+L+R +
Sbjct: 182 IEPPTGVLLHGPPGTGKTMLAKAVANETDATFIKMAGSELVRKFIGEGARLVRDLF---- 237
Query: 116 DIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEE 175
++ + + + I+++DA A + T T + V T+M + L M EE
Sbjct: 238 ELASEHEPAVIFIDEIDAVAAKR--TDSKTSGDAEVQRTMMQL--------LSEMDGFEE 287
Query: 176 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPT-----REDRIGV-CKGIFRNDNVADD 229
V II N + L ++R GR ++ P RE + +G+ D+V +
Sbjct: 288 RGDVSIIAATNRYDMLDRAILRPGRFDRLIEVPKPDIEGREQIFAIHTRGMNLADDVDFE 347
Query: 230 DIVKLVDTFPGQSID 244
+ ++ + F G I+
Sbjct: 348 ALAEMAEEFSGAEIE 362
>gi|154151004|ref|YP_001404622.1| proteasome-activating nucleotidase [Methanoregula boonei 6A8]
gi|166199290|sp|A7I8B8.1|PAN_METB6 RecName: Full=Proteasome-activating nucleotidase; Short=PAN;
AltName: Full=Proteasomal ATPase; AltName:
Full=Proteasome regulatory ATPase; AltName:
Full=Proteasome regulatory particle
gi|153999556|gb|ABS55979.1| 26S proteasome subunit P45 family [Methanoregula boonei 6A8]
Length = 436
Score = 45.8 bits (107), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 46/166 (27%), Positives = 73/166 (43%), Gaps = 18/166 (10%)
Query: 56 IKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 115
I+ P + ++G G GK+ + V + + + + EL GE A+L+R+ +
Sbjct: 209 IEPPKGVLLYGPPGTGKTLLAKAVAHETNAHFMRVVGSELVQKYIGEGARLVRELF---- 264
Query: 116 DIIKKGKMCCLMINDLDA-GAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKE 174
D+ KK + I+++DA GA R T T ++ V TLM + L GM E
Sbjct: 265 DLAKKKAPTIIFIDEIDAVGASR---TEANTSGDREVQRTLMQL--------LAGMDGFE 313
Query: 175 ENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPT--REDRIGVCK 218
V II N L L+R GR ++ P E R+ + K
Sbjct: 314 TRGDVKIIGATNRIDILDKALLRPGRFDRIIEIPLPDEEGRLSILK 359
>gi|433638558|ref|YP_007284318.1| AAA+ family ATPase [Halovivax ruber XH-70]
gi|433290362|gb|AGB16185.1| AAA+ family ATPase [Halovivax ruber XH-70]
Length = 727
Score = 45.8 bits (107), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 36/154 (23%), Positives = 66/154 (42%), Gaps = 18/154 (11%)
Query: 55 NIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREA 114
N P + ++G G GK+ + + +N + + E+ GE K IR+ + A
Sbjct: 504 NTDPPAGVLLYGPPGTGKTLLARALAGETDVNFVQVDGPEVLDRYVGESEKAIRKLFERA 563
Query: 115 ADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKE 174
++ + I+++DA GR G + + V ++V+ L +L GM
Sbjct: 564 ----RQSAPSIIFIDEIDALVGRRGES--HEVTERVVSQLL---------TELDGMR--- 605
Query: 175 ENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAP 208
ENP + ++ N L L+R GR++ P
Sbjct: 606 ENPNLVVLAATNRMDDLDPALLRPGRLDTHVLVP 639
>gi|169611346|ref|XP_001799091.1| hypothetical protein SNOG_08783 [Phaeosphaeria nodorum SN15]
gi|111062831|gb|EAT83951.1| hypothetical protein SNOG_08783 [Phaeosphaeria nodorum SN15]
Length = 738
Score = 45.8 bits (107), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 40/165 (24%), Positives = 74/165 (44%), Gaps = 19/165 (11%)
Query: 64 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 123
+WG G GK+ + V A+ N I + EL + GE + IRQ ++ A +
Sbjct: 516 LWGPPGCGKTLLAKAVAAESKANFISVKGPELLNKYVGESERAIRQVFQRA----RSSAP 571
Query: 124 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 183
C + ++ DA A + T + + ++VN TL+ D + Q G+Y +I
Sbjct: 572 CVVFFDEFDALAPKR-STELHEASARVVN-TLLTELDGLSMRQ--GIY---------LIA 618
Query: 184 TGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCKGIFRNDNV 226
N + ++R GR+E + P+ ++R+ + + + R V
Sbjct: 619 ATNRPEMIDEAILRPGRLETRLYVGLPSPKERVDILRALIRQRGV 663
>gi|341896869|gb|EGT52804.1| hypothetical protein CAEBREN_04435 [Caenorhabditis brenneri]
Length = 268
Score = 45.8 bits (107), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 51/218 (23%), Positives = 98/218 (44%), Gaps = 29/218 (13%)
Query: 64 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 123
++G G GK+ V +++ N + + + + GE A++IR+ + A D +
Sbjct: 51 LFGPPGTGKTLLARAVASQLDCNFLKVVSSAIVDKYIGESARMIREMFNYARD----HQP 106
Query: 124 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 183
C + ++++DA GR ++ T ++ + TLM + + QL G + +V +I+
Sbjct: 107 CIVFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QLDGF---DSLGKVKVIM 156
Query: 184 TGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCK----GIFRNDNVADDDIVKLVDT 237
N TL L+R GR+++ P + R+ + K I ++ + + +VKL D
Sbjct: 157 ATNRPDTLDPALLRPGRLDRKIEIGLPNEQSRLEILKIHSNKITKHGEIDFEAVVKLSDG 216
Query: 238 FPGQSID-------FFG--ALRARVYDDEVRKWISGVG 266
F + F A R V D++ K + VG
Sbjct: 217 FSAADLRNVCTEAGMFAIRAEREFVIDEDFMKAVRKVG 254
>gi|452206535|ref|YP_007486657.1| proteasome-activating nucleotidase [Natronomonas moolapensis
8.8.11]
gi|452082635|emb|CCQ35898.1| proteasome-activating nucleotidase [Natronomonas moolapensis
8.8.11]
Length = 404
Score = 45.8 bits (107), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 44/168 (26%), Positives = 73/168 (43%), Gaps = 16/168 (9%)
Query: 64 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 123
+ G G GK+ + V + I M+ EL GE AKL+R + ++ ++ +
Sbjct: 187 LHGPPGTGKTMLAKAVANQTDATFIKMAGSELVHKFIGEGAKLVRDLF----ELARQQEP 242
Query: 124 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 183
+ I+++DA A + T T + V T+M + L M E+ ++ II
Sbjct: 243 AVVFIDEIDAIAAKR--TESKTSGDAEVQRTMMQL--------LAEMDGFEDRGQISIIA 292
Query: 184 TGNDFSTLYAPLIRDGRMEKFYWAPTR--EDRIGVCKGIFRNDNVADD 229
N F L ++R GR ++ P E R + + R NVADD
Sbjct: 293 ATNRFDMLDRAILRPGRFDRLIEVPKPDFEGREMIFEIHTRGMNVADD 340
>gi|448312904|ref|ZP_21502637.1| proteasome-activating nucleotidase [Natronolimnobius
innermongolicus JCM 12255]
gi|445600022|gb|ELY54042.1| proteasome-activating nucleotidase [Natronolimnobius
innermongolicus JCM 12255]
Length = 410
Score = 45.8 bits (107), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 47/195 (24%), Positives = 84/195 (43%), Gaps = 20/195 (10%)
Query: 56 IKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 115
I+ P + ++G G GK+ + V + I M+ EL GE ++L+R +
Sbjct: 183 IEPPSGVLLYGPPGTGKTMLAKAVAHETDATFIKMAGSELVRKFIGEGSRLVRDLF---- 238
Query: 116 DIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEE 175
++ ++ + + I+++DA A R + T + V T+M + L M E
Sbjct: 239 EMAREREPAIIFIDEIDAIATRRSESK--TSGDAEVQRTMMQL--------LSEMDGFEA 288
Query: 176 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPT--REDRIGVCKGIFRNDNVADD---- 229
+ II N F L ++R GR ++ P R+ R + + R NVAD+
Sbjct: 289 RGEIRIIAATNRFDMLDRAILRPGRFDRLIEVPEPDRDGREQILQIHTRGMNVADEVDFG 348
Query: 230 DIVKLVDTFPGQSID 244
D+ D + G I+
Sbjct: 349 DLADDTDGYSGAEIE 363
>gi|435847773|ref|YP_007310023.1| Proteasome-activating nucleotidase [Natronococcus occultus SP4]
gi|433674041|gb|AGB38233.1| Proteasome-activating nucleotidase [Natronococcus occultus SP4]
Length = 409
Score = 45.8 bits (107), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 48/182 (26%), Positives = 75/182 (41%), Gaps = 17/182 (9%)
Query: 64 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 123
+ G G GK+ + V + I M+ EL GE ++L+R + ++ ++ +
Sbjct: 190 LHGPPGTGKTMLAKAVAHETDATFIKMAGSELVRKFIGEGSRLVRDLF----EMAREREP 245
Query: 124 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 183
+ I+++DA A T T + V T+M + L M E + II
Sbjct: 246 AIIFIDEIDAVA--TTRTESKTSGDAEVQRTMMQL--------LSEMDGFEARGEIRIIA 295
Query: 184 TGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCKGIFRNDNVADD-DIVKLVDTFPG 240
N F L ++R GR ++ P RE R + R NVADD D L D G
Sbjct: 296 ATNRFDMLDRAILRPGRFDRLIEVPEPNREGREQILSIHTRGMNVADDVDFSALADDTEG 355
Query: 241 QS 242
S
Sbjct: 356 YS 357
>gi|389852490|ref|YP_006354724.1| cell division control protein 48, aaa family [Pyrococcus sp. ST04]
gi|388249796|gb|AFK22649.1| putative cell division control protein 48, aaa family [Pyrococcus
sp. ST04]
Length = 837
Score = 45.8 bits (107), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 47/184 (25%), Positives = 78/184 (42%), Gaps = 19/184 (10%)
Query: 48 KNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLI 107
K F L I P + ++G G GK+ + + + N I + E+ S GE K I
Sbjct: 569 KAFKKL-GISPPKGILLYGPPGTGKTLLAKAIATESQANFIAIRGPEVLSKWVGESEKRI 627
Query: 108 RQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQL 167
R+ +R+A ++ + I+++DA A G T V ++++N L
Sbjct: 628 REIFRKA----RQAAPSIIFIDEIDAIAPARGTTEGERVTDRLINQLLTE---------- 673
Query: 168 PGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCKGIFRNDN 225
M +EN V +I N L L+R GR ++ AP + R+ + K R
Sbjct: 674 --MDGIQENSGVVVIAATNRPDILDPALLRPGRFDRLILVPAPDEKARLEIFKVHTRGMP 731
Query: 226 VADD 229
+A D
Sbjct: 732 LAKD 735
>gi|220930906|ref|YP_002507814.1| ATP-dependent metalloprotease FtsH [Halothermothrix orenii H 168]
gi|310943131|sp|B8D065.1|FTSH_HALOH RecName: Full=ATP-dependent zinc metalloprotease FtsH
gi|219992216|gb|ACL68819.1| ATP-dependent metalloprotease FtsH [Halothermothrix orenii H 168]
Length = 630
Score = 45.8 bits (107), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 52/192 (27%), Positives = 80/192 (41%), Gaps = 27/192 (14%)
Query: 57 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAD 116
KVP + + G G GK+ V + G+ ++S + G A +R + +
Sbjct: 194 KVPKGVLLVGPPGTGKTLLARAVAGEAGVPFFIISGSDFVEMFVGVGASRVRDLFEQG-- 251
Query: 117 IIKKGKMCCLMINDLDA-----GAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMY 171
KK C + I++LDA GAG GG + Q +N L V++ G
Sbjct: 252 --KKNAPCIIFIDELDAVGRQRGAGLGGGHDE---REQTLNQLL---------VEMDGF- 296
Query: 172 NKEENPRVPIIVTGNDFSTLYAPLIRDGRMEK--FYWAPTREDRIGVCKGIFRNDNVADD 229
E N + ++ N L L+R GR ++ P + R+G+ K RN VADD
Sbjct: 297 --EPNEGIIVMAATNRPDVLDPALLRPGRFDRQVVVDKPDVKGRMGILKIHLRNKPVADD 354
Query: 230 -DIVKLVDTFPG 240
D+ L PG
Sbjct: 355 VDVEVLAKRTPG 366
>gi|341893757|gb|EGT49692.1| CBN-RPT-4 protein [Caenorhabditis brenneri]
Length = 398
Score = 45.8 bits (107), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 51/218 (23%), Positives = 98/218 (44%), Gaps = 29/218 (13%)
Query: 64 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 123
++G G GK+ V +++ N + + + + GE A++IR+ + A D +
Sbjct: 181 LFGPPGTGKTLLARAVASQLDCNFLKVVSSAIVDKYIGESARMIREMFNYARD----HQP 236
Query: 124 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 183
C + ++++DA GR ++ T ++ + TLM + + QL G + +V +I+
Sbjct: 237 CIVFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QLDGF---DSLGKVKVIM 286
Query: 184 TGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCK----GIFRNDNVADDDIVKLVDT 237
N TL L+R GR+++ P + R+ + K I ++ + + +VKL D
Sbjct: 287 ATNRPDTLDPALLRPGRLDRKIEIGLPNEQSRLEILKIHSNKITKHGEIDFEAVVKLSDG 346
Query: 238 FPGQSID-------FFG--ALRARVYDDEVRKWISGVG 266
F + F A R V D++ K + VG
Sbjct: 347 FSAADLRNVCTEAGMFAIRAEREFVIDEDFMKAVRKVG 384
>gi|448677880|ref|ZP_21689070.1| cell division control protein 48 [Haloarcula argentinensis DSM
12282]
gi|445773555|gb|EMA24588.1| cell division control protein 48 [Haloarcula argentinensis DSM
12282]
Length = 757
Score = 45.4 bits (106), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 59/248 (23%), Positives = 105/248 (42%), Gaps = 32/248 (12%)
Query: 64 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 123
++G G GK+ + V + N I + EL + GE K +R+ + +A ++
Sbjct: 505 MYGPPGTGKTLLAKAVANEAQSNFISVKGPELLNKFVGESEKGVREVFSKA----RENAP 560
Query: 124 CCLMINDLDAGAG-RMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPII 182
+ +++D+ AG R GGTT V ++V+ L +L G+ + E V ++
Sbjct: 561 TVVFFDEIDSIAGERGGGTTDSGVGERVVSQLL---------TELDGIEDME---NVVVV 608
Query: 183 VTGNDFSTLYAPLIRDGRMEKFYWAPT--REDRIGVCKGIFRNDNVAD----DDIVKLVD 236
T N + L+R GR+++ P E R + + R+ +AD D + D
Sbjct: 609 ATTNRPDLIDDALLRPGRLDRHVHVPVPDEEARRAIFQVHTRDKPLADGVDLDQLASRTD 668
Query: 237 TFPGQSIDFFGALRARVYDDEVRKWISGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLE 296
+ G I+ A+ R++I+ V IG S+ N + FE L E
Sbjct: 669 GYVGADIE---AVAREASMAATREFINSVDPEEIGDSVSNVRVTMDHFEH------ALEE 719
Query: 297 YGNMIVQE 304
G + +E
Sbjct: 720 VGPSVTEE 727
>gi|198418753|ref|XP_002130650.1| PREDICTED: similar to nuclear VCP-like [Ciona intestinalis]
Length = 779
Score = 45.4 bits (106), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 38/162 (23%), Positives = 75/162 (46%), Gaps = 19/162 (11%)
Query: 64 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 123
+ G G GK+ + + + GIN I + EL + GE + +RQ + A +
Sbjct: 537 LAGPPGCGKTLLAKAIANESGINFISVKGPELLNMYVGESERAVRQCFERA----RNSAP 592
Query: 124 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 183
C + ++LD+ R + + + ++VN L +L G+ ++++ V ++
Sbjct: 593 CVVFFDELDSLCPRR-TSAESGASARVVNQML---------TELDGLESRKQ---VFVVA 639
Query: 184 TGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCKGIFRN 223
N + ++R GR++K + PT EDRI + + I +N
Sbjct: 640 ATNRPDIIDPAILRPGRLDKVLYVGIPTTEDRIQILRTITKN 681
>gi|308480473|ref|XP_003102443.1| CRE-MAC-1 protein [Caenorhabditis remanei]
gi|308261175|gb|EFP05128.1| CRE-MAC-1 protein [Caenorhabditis remanei]
Length = 841
Score = 45.4 bits (106), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 60/114 (52%), Gaps = 8/114 (7%)
Query: 41 KLVVHIT--KNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESG 98
+L +H+ K F +L + P + G G GK+ + V ++G+ + ++A EL SG
Sbjct: 234 RLAMHLKRPKTFATL-GVDPPRGFIVHGPPGCGKTLFAQAVAGELGVPMLQLAATELVSG 292
Query: 99 NAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVN 152
+GE + IR+ + D K+ C L+++D+DA A R T Q + ++V+
Sbjct: 293 VSGETEEKIRRLF----DTAKQNSPCILILDDIDAIAPRR-ETAQREMERRVVS 341
>gi|258577759|ref|XP_002543061.1| ATPase [Uncinocarpus reesii 1704]
gi|237903327|gb|EEP77728.1| ATPase [Uncinocarpus reesii 1704]
Length = 751
Score = 45.4 bits (106), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 42/168 (25%), Positives = 73/168 (43%), Gaps = 20/168 (11%)
Query: 64 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 123
++G G K+ + + + G+N + + E+ S GE + +R+ +R+A + +
Sbjct: 524 LYGPPGCSKTLTVKALATEAGLNFLAVKGAEVLSMYVGESERALREIFRKA----RAARP 579
Query: 124 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 183
+ +++DA AGR G Q VN V TL+N D EE V ++
Sbjct: 580 SIIFFDEIDAIAGRRGPGQQSGVN---VLTTLLNEMD-----------GIEELKNVLVVA 625
Query: 184 TGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCKGIFRNDNVADD 229
N TL L+R GR++ + P E R + F +V D+
Sbjct: 626 ATNKPDTLDPALMRPGRLDNILYIGLPDMEARKEILDIWFAKSDVHDE 673
>gi|268534030|ref|XP_002632145.1| C. briggsae CBR-RPT-4 protein [Caenorhabditis briggsae]
Length = 398
Score = 45.4 bits (106), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 51/218 (23%), Positives = 98/218 (44%), Gaps = 29/218 (13%)
Query: 64 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 123
++G G GK+ V +++ N + + + + GE A++IR+ + A D +
Sbjct: 181 LFGPPGTGKTLLARAVASQLDCNFLKVVSSAIVDKYIGESARMIREMFNYARD----HQP 236
Query: 124 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 183
C + ++++DA GR ++ T ++ + TLM + + QL G + +V +I+
Sbjct: 237 CIVFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QLDGF---DSLGKVKVIM 286
Query: 184 TGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCK----GIFRNDNVADDDIVKLVDT 237
N TL L+R GR+++ P + R+ + K I ++ + + +VKL D
Sbjct: 287 ATNRPDTLDPALLRPGRLDRKIEIGLPNEQSRLEILKIHSNKITKHGEIDFEAVVKLSDG 346
Query: 238 FPGQSID-------FFG--ALRARVYDDEVRKWISGVG 266
F + F A R V D++ K + VG
Sbjct: 347 FSAADLRNVCTEAGMFAIRAEREFVIDEDFMKAVRKVG 384
>gi|344232542|gb|EGV64421.1| 26S proteasome subunit P45 [Candida tenuis ATCC 10573]
gi|344232543|gb|EGV64422.1| hypothetical protein CANTEDRAFT_114256 [Candida tenuis ATCC 10573]
Length = 414
Score = 45.4 bits (106), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 38/148 (25%), Positives = 69/148 (46%), Gaps = 14/148 (9%)
Query: 56 IKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 115
IK P + ++G G GK+ + V A +G N I A + GE A+LIR+ + A
Sbjct: 189 IKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASAIVDKYIGESARLIREMFSYA- 247
Query: 116 DIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEE 175
++ C + ++++DA GR ++ T ++ + TLM + + G
Sbjct: 248 ---REHSPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLNQMDGFDTLG------ 296
Query: 176 NPRVPIIVTGNDFSTLYAPLIRDGRMEK 203
+ +I+ N TL L+R GR+++
Sbjct: 297 --QTKVIMATNRPDTLDPALLRPGRLDR 322
>gi|156547510|ref|XP_001603936.1| PREDICTED: 26S protease regulatory subunit 10B [Nasonia
vitripennis]
Length = 393
Score = 45.4 bits (106), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 44/186 (23%), Positives = 88/186 (47%), Gaps = 20/186 (10%)
Query: 64 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 123
++G G GK+ V +++ N + + + + GE A+LIR+ + A D +
Sbjct: 176 LYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIREMFNYARD----HQP 231
Query: 124 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 183
C + ++++DA GR ++ T ++ + TLM + + Q+ G + +V +I+
Sbjct: 232 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGF---DSLGQVKMIM 281
Query: 184 TGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCK----GIFRNDNVADDDIVKLVDT 237
N TL L+R GR+++ P + R+ + K I ++ + + +VKL D
Sbjct: 282 ATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLEILKIHANPIAKHGEIDYEAVVKLSDG 341
Query: 238 FPGQSI 243
F G +
Sbjct: 342 FNGADL 347
>gi|296005359|ref|XP_001349843.2| 26S proteasome regulatory subunit 7, putative [Plasmodium
falciparum 3D7]
gi|225631944|emb|CAD52250.2| 26S proteasome regulatory subunit 7, putative [Plasmodium
falciparum 3D7]
Length = 420
Score = 45.4 bits (106), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 39/157 (24%), Positives = 72/157 (45%), Gaps = 16/157 (10%)
Query: 64 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 123
++G G GK+ + + I + EL GE A+++R+ ++ A K K
Sbjct: 201 LYGPPGTGKTLTARAIANRTDACFICVIGSELVQKYVGEGARMVRELFQMA----KSKKA 256
Query: 124 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 183
C L I+++DA G G + + + V T++ I + QL G N+ + +++
Sbjct: 257 CILFIDEVDAIGGSRGDESAH--GDHEVQRTMLEIVN-----QLDGFDNRGN---IKVLM 306
Query: 184 TGNDFSTLYAPLIRDGRMEKF--YWAPTREDRIGVCK 218
N TL + L+R GR+++ + P E R + K
Sbjct: 307 ATNRPDTLDSALVRPGRIDRRIEFSLPDLEGRTHIFK 343
>gi|389586053|dbj|GAB68782.1| 26S proteasome ATPase subunit [Plasmodium cynomolgi strain B]
Length = 420
Score = 45.4 bits (106), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 39/157 (24%), Positives = 72/157 (45%), Gaps = 16/157 (10%)
Query: 64 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 123
++G G GK+ + + I + EL GE A+++R+ ++ A K K
Sbjct: 201 LYGPPGTGKTLTARAIANRTDACFICVIGSELVQKYVGEGARMVRELFQMA----KSKKA 256
Query: 124 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 183
C L I+++DA G G + + + V T++ I + QL G N+ + +++
Sbjct: 257 CILFIDEVDAIGGSRGDESAH--GDHEVQRTMLEIVN-----QLDGFDNRGN---IKVLM 306
Query: 184 TGNDFSTLYAPLIRDGRMEKF--YWAPTREDRIGVCK 218
N TL + L+R GR+++ + P E R + K
Sbjct: 307 ATNRPDTLDSALVRPGRIDRKIEFSLPDLEGRTHIFK 343
>gi|399217513|emb|CCF74400.1| unnamed protein product [Babesia microti strain RI]
Length = 419
Score = 45.4 bits (106), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 44/173 (25%), Positives = 79/173 (45%), Gaps = 17/173 (9%)
Query: 48 KNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLI 107
+ F+SL I P + ++G G GK+ V + I + EL GE A+++
Sbjct: 185 EKFVSL-GIDPPKGVLLYGPPGTGKTLTARAVANRTDACFICVIGSELVQKYVGEGARMV 243
Query: 108 RQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQL 167
R+ ++ A + K C L I+++DA G G + + + V T++ I + QL
Sbjct: 244 RELFQMA----RSKKACILFIDEVDAIGGSRGSESAH--GDHEVQRTMLEIVN-----QL 292
Query: 168 PGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKF--YWAPTREDRIGVCK 218
G + + +++ N TL L+R GR+++ + P E RI + K
Sbjct: 293 DGF---DARGNIKVLMATNRPDTLDPALLRPGRIDRKVEFGLPDLEGRIHIFK 342
>gi|307190651|gb|EFN74615.1| 26S protease regulatory subunit S10B [Camponotus floridanus]
Length = 389
Score = 45.4 bits (106), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 44/186 (23%), Positives = 88/186 (47%), Gaps = 20/186 (10%)
Query: 64 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 123
++G G GK+ V +++ N + + + + GE A+LIR+ + A D +
Sbjct: 172 LYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIREMFNYARD----HQP 227
Query: 124 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 183
C + ++++DA GR ++ T ++ + TLM + + Q+ G + +V +I+
Sbjct: 228 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGF---DSLGQVKMIM 277
Query: 184 TGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCK----GIFRNDNVADDDIVKLVDT 237
N TL L+R GR+++ P + R+ + K I ++ + + +VKL D
Sbjct: 278 ATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLEILKIHALPIAKHGEIDYEAVVKLSDG 337
Query: 238 FPGQSI 243
F G +
Sbjct: 338 FNGADL 343
>gi|432329083|ref|YP_007247227.1| 26S proteasome subunit P45 family [Aciduliprofundum sp. MAR08-339]
gi|432135792|gb|AGB05061.1| 26S proteasome subunit P45 family [Aciduliprofundum sp. MAR08-339]
Length = 395
Score = 45.4 bits (106), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 59/229 (25%), Positives = 89/229 (38%), Gaps = 43/229 (18%)
Query: 64 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 123
+ G G GK+ + V I EL GE AKL+R+ + D+ +K
Sbjct: 178 LAGPPGTGKTLLAKAVAHHTHATFIRTVGSELVRKYIGEGAKLVRELF----DLARKKAP 233
Query: 124 CCLMINDLDA-GAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPII 182
+ I+++DA GA R+ T ++ V TLM + +L G E V II
Sbjct: 234 SIVFIDEIDAIGARRLDMATS---GDREVQRTLMQL-----LAELDGF---EPLDNVKII 282
Query: 183 VTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCKGIFRNDNVADDD---IVKLVDT 237
N L L+R GR ++ P + R+ + K R N+ D D + K D
Sbjct: 283 AATNRPDILDEALLRPGRFDRIIQVPYPDYDARVEILKIHTRRMNLKDVDLERVAKKTDG 342
Query: 238 FPGQSI----------------------DFFGALRARVYDDEVRKWISG 264
F G + DF A+R ++ DE+RK G
Sbjct: 343 FSGADLKVICMEAGMFAIRDERDYVTHDDFEKAIRKFLHADEMRKEAPG 391
>gi|268532972|ref|XP_002631614.1| C. briggsae CBR-MAC-1 protein [Caenorhabditis briggsae]
Length = 826
Score = 45.4 bits (106), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 60/114 (52%), Gaps = 8/114 (7%)
Query: 41 KLVVHIT--KNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESG 98
+L +H+ K F +L + P + G G GK+ + V ++G+ + ++A EL SG
Sbjct: 231 RLAMHLKRPKTFATL-GVDPPRGFIVHGPPGCGKTLFAQAVAGELGVPMLQLAATELVSG 289
Query: 99 NAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVN 152
+GE + IR+ + D K+ C L+++D+DA A R T Q + ++V+
Sbjct: 290 VSGETEEKIRRLF----DTAKQNSPCILILDDIDAIAPRR-ETAQREMERRVVS 338
>gi|378725904|gb|EHY52363.1| 26S protease subunit rpt4 [Exophiala dermatitidis NIH/UT8656]
Length = 393
Score = 45.4 bits (106), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 47/194 (24%), Positives = 90/194 (46%), Gaps = 20/194 (10%)
Query: 56 IKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 115
IK P + ++G G GK+ V + + N + + + + GE A+LIR+ + A
Sbjct: 168 IKPPKGVLLYGPPGTGKTLLARAVASSLDTNFLKVVSSAIVDKYIGESARLIREMFGYA- 226
Query: 116 DIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEE 175
K+ + C + ++++DA GR ++ T ++ + TLM + + QL G +
Sbjct: 227 ---KEHEPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QLDGF---DY 273
Query: 176 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRED--RIGVCK----GIFRNDNVADD 229
+ II+ N TL L+R GR+++ P + R+ + K G+ N+ +
Sbjct: 274 LGKTKIIMATNRPDTLDPALLRAGRLDRKIEIPLPNEVGRLEILKIHAAGVVTEGNIDFE 333
Query: 230 DIVKLVDTFPGQSI 243
+VK+ D G +
Sbjct: 334 SVVKMSDGLNGADL 347
>gi|320164654|gb|EFW41553.1| proteasome 26S subunit [Capsaspora owczarzaki ATCC 30864]
Length = 391
Score = 45.4 bits (106), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 45/194 (23%), Positives = 89/194 (45%), Gaps = 20/194 (10%)
Query: 56 IKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 115
IK P + ++G G GK+ V + + + + + + + GE A+LIR+ + A
Sbjct: 166 IKPPKGVLLYGPPGTGKTLLARAVASNIEASFLKVVSSSIVDKYIGESARLIREMFGYAR 225
Query: 116 DIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEE 175
D + C + ++++DA GR ++ T ++ + TLM + + + G
Sbjct: 226 D----HQPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLNQMDGFDVLG------ 273
Query: 176 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCK----GIFRNDNVADD 229
+V +I+ N TL L+R GR+++ P + R+ + K I ++ + D
Sbjct: 274 --KVKMIMATNRPDTLDPALLRPGRLDRKIEIPLPNEQARMDILKIHSAAITKHGEIDWD 331
Query: 230 DIVKLVDTFPGQSI 243
++KL D F G +
Sbjct: 332 AVIKLSDGFNGADL 345
>gi|156102703|ref|XP_001617044.1| 26S proteasome ATPase subunit [Plasmodium vivax Sal-1]
gi|148805918|gb|EDL47317.1| 26S proteasome ATPase subunit, putative [Plasmodium vivax]
Length = 420
Score = 45.4 bits (106), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 39/157 (24%), Positives = 72/157 (45%), Gaps = 16/157 (10%)
Query: 64 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 123
++G G GK+ + + I + EL GE A+++R+ ++ A K K
Sbjct: 201 LYGPPGTGKTLTARAIANRTDACFICVIGSELVQKYVGEGARMVRELFQMA----KSKKA 256
Query: 124 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 183
C L I+++DA G G + + + V T++ I + QL G N+ + +++
Sbjct: 257 CILFIDEVDAIGGSRGDESAH--GDHEVQRTMLEIVN-----QLDGFDNRGN---IKVLM 306
Query: 184 TGNDFSTLYAPLIRDGRMEKF--YWAPTREDRIGVCK 218
N TL + L+R GR+++ + P E R + K
Sbjct: 307 ATNRPDTLDSALVRPGRIDRKIEFSLPDLEGRTHIFK 343
>gi|443327948|ref|ZP_21056554.1| AAA+ family ATPase [Xenococcus sp. PCC 7305]
gi|442792452|gb|ELS01933.1| AAA+ family ATPase [Xenococcus sp. PCC 7305]
Length = 498
Score = 45.4 bits (106), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 48/204 (23%), Positives = 88/204 (43%), Gaps = 36/204 (17%)
Query: 53 LPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYR 112
LPN + L+ GI +G GKS + + + + + G L +G GE R R
Sbjct: 256 LPNPRGLLLAGI---QGTGKSLTAKAIAHNWHLPLLRLDVGRLFAGLVGES----ESRTR 308
Query: 113 EAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYN 172
+ ++ + C L I+++D GG+ Q D+ T ++ G +
Sbjct: 309 QMINLAEALAPCILWIDEIDKAFA--GGSAQ---------------GDSGTTSRVFGTFI 351
Query: 173 K---EENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCK---GIFRND 224
E+ V ++ T N+ TL ++R GR ++ ++ P++E+R + + G R
Sbjct: 352 TWLAEKQSPVFVVATANNIQTLPPEMLRKGRFDEIFFVGLPSQEEREAIFQVHLGKLRPH 411
Query: 225 NVADDDIVKLVDTFPGQSIDFFGA 248
N+ + D +L P +F GA
Sbjct: 412 NLKNYDFKRLAYETP----EFSGA 431
>gi|407465786|ref|YP_006776668.1| ATPase AAA [Candidatus Nitrosopumilus sp. AR2]
gi|407048974|gb|AFS83726.1| ATPase AAA [Candidatus Nitrosopumilus sp. AR2]
Length = 710
Score = 45.4 bits (106), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 49/196 (25%), Positives = 82/196 (41%), Gaps = 24/196 (12%)
Query: 55 NIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREA 114
+++ P + + G G GK+ + + N I + EL S GE K +R+ +R+A
Sbjct: 480 DVESPKGILLHGPPGTGKTLIAKALAKMTESNFISIKGPELLSKWVGESEKGVREIFRKA 539
Query: 115 ADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKE 174
++ C + ++++DA R G + V +V+ L I G+ E
Sbjct: 540 ----RQAAPCIIFLDEVDALVPRRGSGSDSHVTENVVSQILTEID---------GL---E 583
Query: 175 ENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDR-------IGVCKGIFRNDNVA 227
E V II N + L+R GR ++ P +++ I K +D V
Sbjct: 584 ELHNVLIIGATNRLDIVDEALLRPGRFDRIIKVPNPDEKGRQHIFEIHTKKKPLASD-VK 642
Query: 228 DDDIVKLVDTFPGQSI 243
+IVKL D F G I
Sbjct: 643 ISEIVKLTDDFSGAEI 658
>gi|110667503|ref|YP_657314.1| proteasome-activating nucleotidase [Haloquadratum walsbyi DSM
16790]
gi|109625250|emb|CAJ51672.1| proteasome-activating nucleotidase [Haloquadratum walsbyi DSM
16790]
Length = 405
Score = 45.4 bits (106), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 39/153 (25%), Positives = 68/153 (44%), Gaps = 14/153 (9%)
Query: 56 IKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 115
I+ P + ++G G GK+ + V + + I M+ EL GE AKL+R +
Sbjct: 180 IQPPSGVLLYGPPGTGKTMLAKAVANQTDASFIKMAGSELVHKFIGEGAKLVRDLF---- 235
Query: 116 DIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEE 175
++ ++ + + I+++DA A + T T + V T+M + L M +E
Sbjct: 236 EVARENEPAVIFIDEIDAIASKR--TDSKTSGDAEVQRTMMQL--------LSEMDGFDE 285
Query: 176 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAP 208
V II N F L ++R GR ++ P
Sbjct: 286 RGDVRIIAATNRFDMLDEAILRPGRFDRLIEVP 318
>gi|195493667|ref|XP_002094514.1| GE21865 [Drosophila yakuba]
gi|194180615|gb|EDW94226.1| GE21865 [Drosophila yakuba]
Length = 398
Score = 45.4 bits (106), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 44/186 (23%), Positives = 87/186 (46%), Gaps = 20/186 (10%)
Query: 64 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 123
++G G GK+ + ++M N + + + + GE A+LIR+ + A D +
Sbjct: 181 LYGPPGTGKTLLARAIASQMDANFLKVVSSAIVDKYIGESARLIREMFAYARD----HQP 236
Query: 124 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 183
C + ++++DA GR ++ T ++ + TLM + + Q+ G + +V +I+
Sbjct: 237 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGF---DALGQVKMIM 286
Query: 184 TGNDFSTLYAPLIRDGRMEKFYWAP-----TREDRIGVCKG-IFRNDNVADDDIVKLVDT 237
N TL L+R GR+++ P R D + + G + + + + +VKL D
Sbjct: 287 ATNRPDTLDPALLRPGRLDRKLEIPLPNEVARMDILKIHAGPLAKRGEIDYEAVVKLSDM 346
Query: 238 FPGQSI 243
F G +
Sbjct: 347 FNGADL 352
>gi|194869501|ref|XP_001972464.1| GG15543 [Drosophila erecta]
gi|190654247|gb|EDV51490.1| GG15543 [Drosophila erecta]
Length = 398
Score = 45.4 bits (106), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 44/186 (23%), Positives = 87/186 (46%), Gaps = 20/186 (10%)
Query: 64 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 123
++G G GK+ + ++M N + + + + GE A+LIR+ + A D +
Sbjct: 181 LYGPPGTGKTLLARAIASQMDANFLKVVSSAIVDKYIGESARLIREMFAYARD----HQP 236
Query: 124 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 183
C + ++++DA GR ++ T ++ + TLM + + Q+ G + +V +I+
Sbjct: 237 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGF---DALGQVKMIM 286
Query: 184 TGNDFSTLYAPLIRDGRMEKFYWAP-----TREDRIGVCKG-IFRNDNVADDDIVKLVDT 237
N TL L+R GR+++ P R D + + G + + + + +VKL D
Sbjct: 287 ATNRPDTLDPALLRPGRLDRKLEIPLPNEVARMDILKIHAGPLAKRGEIDYEAVVKLSDM 346
Query: 238 FPGQSI 243
F G +
Sbjct: 347 FNGADL 352
>gi|157103169|ref|XP_001647852.1| peroxisome assembly factor-2 (peroxisomal-type atpase 1) [Aedes
aegypti]
gi|108884684|gb|EAT48909.1| AAEL000081-PA, partial [Aedes aegypti]
Length = 940
Score = 45.4 bits (106), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 60/240 (25%), Positives = 105/240 (43%), Gaps = 35/240 (14%)
Query: 21 RTYNLDNTIDGLYIAPAF-----MDKLVVHITKNFMSLPNIKVPLILGI--------WGG 67
RT + ++ F MDK++ + + + + + +V +G+ G
Sbjct: 216 RTKRFKKEVCARFVETTFEDVGGMDKILRDLCELLLHVKHPEVYRHVGLPPPRGFLLHGP 275
Query: 68 KGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLM 127
G GK+ + ++ I I + A EL +G +GE + IR+ + +AA + C L
Sbjct: 276 PGSGKTLLAHAIAGQLKIGLIEIPATELVAGVSGESEERIREVFEQAAVL----SPCVLF 331
Query: 128 INDLDA-GAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGN 186
I+++DA A R+ Q + ++V A L++ DN LP + E V +I N
Sbjct: 332 IDEIDAISANRVNA--QKDMERRIV-AQLLSSLDN-----LPKL---EGGDGVLVIGATN 380
Query: 187 DFSTLYAPLIRDGRMEK--FYWAPTREDRIGVCKGIFRN----DNVADDDIVKLVDTFPG 240
L L R GR ++ P RE R + K I +N +N+ D++ KL + G
Sbjct: 381 RPDALDPALRRVGRFDQEISLGIPDREARAQILKIICKNLKIEENIDFDELAKLTPGYVG 440
Score = 43.1 bits (100), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 43/209 (20%), Positives = 88/209 (42%), Gaps = 27/209 (12%)
Query: 51 MSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQR 110
+ L + P + + G G GK+ + V + GIN I + EL + GE + +RQ
Sbjct: 682 LKLLGLSSPSGVLLCGPPGCGKTLLAKAVANEAGINFISVKGPELLNMYVGESERAVRQC 741
Query: 111 YREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGM 170
++ A + C + ++ D+ + +++ + ++VN L M
Sbjct: 742 FQRA----RNSTPCVIFFDEFDSLCPKRSDSSEGSAGMRVVNQLLTE------------M 785
Query: 171 YNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCKGIFRN----- 223
E+ V ++ N + ++R GR++K + P EDR+ + + + +N
Sbjct: 786 DGIEDRKGVFLMAATNRPDIVDPAVLRPGRLDKILYVGLPAEEDRVDILRALTKNRTQPP 845
Query: 224 --DNVADDDIVKLVDTFPGQSIDFFGALR 250
D+V + +L + + G D G +R
Sbjct: 846 LADDVDLSVVARLTEGYTG--ADLAGLVR 872
>gi|332030866|gb|EGI70502.1| 26S protease regulatory subunit S10B [Acromyrmex echinatior]
Length = 393
Score = 45.4 bits (106), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 44/186 (23%), Positives = 88/186 (47%), Gaps = 20/186 (10%)
Query: 64 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 123
++G G GK+ V +++ N + + + + GE A+LIR+ + A D +
Sbjct: 176 LYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIREMFNYARD----HQP 231
Query: 124 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 183
C + ++++DA GR ++ T ++ + TLM + + Q+ G + +V +I+
Sbjct: 232 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGF---DSLGQVKMIM 281
Query: 184 TGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCK----GIFRNDNVADDDIVKLVDT 237
N TL L+R GR+++ P + R+ + K I ++ + + +VKL D
Sbjct: 282 ATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLEILKIHALPIAKHGEIDYEAVVKLSDG 341
Query: 238 FPGQSI 243
F G +
Sbjct: 342 FNGADL 347
>gi|383856518|ref|XP_003703755.1| PREDICTED: 26S protease regulatory subunit 10B-like [Megachile
rotundata]
Length = 393
Score = 45.4 bits (106), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 44/186 (23%), Positives = 88/186 (47%), Gaps = 20/186 (10%)
Query: 64 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 123
++G G GK+ V +++ N + + + + GE A+LIR+ + A D +
Sbjct: 176 LYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIREMFNYARD----HQP 231
Query: 124 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 183
C + ++++DA GR ++ T ++ + TLM + + Q+ G + +V +I+
Sbjct: 232 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGF---DSLGQVKMIM 281
Query: 184 TGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCK----GIFRNDNVADDDIVKLVDT 237
N TL L+R GR+++ P + R+ + K I ++ + + +VKL D
Sbjct: 282 ATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLEILKIHAAPISKHGEIDYEAVVKLSDG 341
Query: 238 FPGQSI 243
F G +
Sbjct: 342 FNGADL 347
>gi|307207117|gb|EFN84926.1| 26S protease regulatory subunit S10B [Harpegnathos saltator]
Length = 393
Score = 45.4 bits (106), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 44/186 (23%), Positives = 88/186 (47%), Gaps = 20/186 (10%)
Query: 64 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 123
++G G GK+ V +++ N + + + + GE A+LIR+ + A D +
Sbjct: 176 LYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIREMFNYARD----HQP 231
Query: 124 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 183
C + ++++DA GR ++ T ++ + TLM + + Q+ G + +V +I+
Sbjct: 232 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGF---DSLGQVKMIM 281
Query: 184 TGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCK----GIFRNDNVADDDIVKLVDT 237
N TL L+R GR+++ P + R+ + K I ++ + + +VKL D
Sbjct: 282 ATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLEILKIHALPIAKHGEIDYEAVVKLSDG 341
Query: 238 FPGQSI 243
F G +
Sbjct: 342 FNGADL 347
>gi|443897510|dbj|GAC74850.1| 26S proteasome regulatory complex [Pseudozyma antarctica T-34]
Length = 408
Score = 45.4 bits (106), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 47/200 (23%), Positives = 91/200 (45%), Gaps = 21/200 (10%)
Query: 50 FMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQ 109
FM + IK P + ++G G GK+ V + + N + + + + GE A+LIR+
Sbjct: 178 FMRV-GIKPPKGVLLYGPPGTGKTLLARAVASTLETNFLKVVSSAIVDKYIGESARLIRE 236
Query: 110 RYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPG 169
+ A K+ + C + ++++DA GR ++ T ++ + TLM + + G
Sbjct: 237 MFGYA----KEHEPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLNQMDGFDYLG 290
Query: 170 MYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGV----CKGIFRN 223
+ +I+ N TL L+R GR+++ P + R+ + K + +
Sbjct: 291 --------KTKVIMATNRPDTLDPALMRPGRIDRKIEIPLPNEQSRLEILKIHTKPVAKK 342
Query: 224 DNVADDDIVKLVDTFPGQSI 243
+ + + IVKL D F G +
Sbjct: 343 EELDYEAIVKLSDGFNGADL 362
>gi|343425001|emb|CBQ68538.1| probable RPT4-26S proteasome regulatory subunit [Sporisorium
reilianum SRZ2]
Length = 408
Score = 45.4 bits (106), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 47/200 (23%), Positives = 91/200 (45%), Gaps = 21/200 (10%)
Query: 50 FMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQ 109
FM + IK P + ++G G GK+ V + + N + + + + GE A+LIR+
Sbjct: 178 FMRV-GIKPPKGVLLYGPPGTGKTLLARAVASTLETNFLKVVSSAIVDKYIGESARLIRE 236
Query: 110 RYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPG 169
+ A K+ + C + ++++DA GR ++ T ++ + TLM + + G
Sbjct: 237 MFGYA----KEHEPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLNQMDGFDYLG 290
Query: 170 MYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGV----CKGIFRN 223
+ +I+ N TL L+R GR+++ P + R+ + K + +
Sbjct: 291 --------KTKVIMATNRPDTLDPALMRPGRIDRKIEIPLPNEQSRLEILKIHTKPVAKK 342
Query: 224 DNVADDDIVKLVDTFPGQSI 243
+ + + IVKL D F G +
Sbjct: 343 EELDYEAIVKLSDGFNGADL 362
>gi|385802942|ref|YP_005839342.1| proteasome-activating nucleotidase [Haloquadratum walsbyi C23]
gi|339728434|emb|CCC39586.1| proteasome-activating nucleotidase [Haloquadratum walsbyi C23]
Length = 405
Score = 45.4 bits (106), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 39/153 (25%), Positives = 68/153 (44%), Gaps = 14/153 (9%)
Query: 56 IKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 115
I+ P + ++G G GK+ + V + + I M+ EL GE AKL+R +
Sbjct: 180 IQPPSGVLLYGPPGTGKTMLAKAVANQTDASFIKMAGSELVHKFIGEGAKLVRDLF---- 235
Query: 116 DIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEE 175
++ ++ + + I+++DA A + T T + V T+M + L M +E
Sbjct: 236 EVARENEPAVIFIDEIDAIASKR--TDSKTSGDAEVQRTMMQL--------LSEMDGFDE 285
Query: 176 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAP 208
V II N F L ++R GR ++ P
Sbjct: 286 RGDVRIIAATNRFDMLDEAILRPGRFDRLIEVP 318
>gi|289766162|ref|ZP_06525540.1| AAA family ATPase [Fusobacterium sp. D11]
gi|289717717|gb|EFD81729.1| AAA family ATPase [Fusobacterium sp. D11]
Length = 523
Score = 45.4 bits (106), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 42/204 (20%), Positives = 83/204 (40%), Gaps = 26/204 (12%)
Query: 49 NFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIR 108
+ + ++ P + + G G GKS + + A + + ++ G+
Sbjct: 260 DLLKSKGLRSPRGILLVGVPGCGKSLSAKAISASWKLPLYRLDFATVQGSYVGQS----E 315
Query: 109 QRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLP 168
Q+ ++A + C L I++++ G G + V+ +MV L
Sbjct: 316 QQLKDALTTAENVSPCILWIDEIEKGLSGAGSSNDGGVSTRMVGQFLF------------ 363
Query: 169 GMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCKGIFRNDNV 226
+ +E +V ++ T ND S L + L+R GR ++ ++ PT E+R + K R
Sbjct: 364 --WLQESRKQVFVVATANDVSMLPSELLRRGRFDELFFIDLPTSEERFDIIKMYMRKYLS 421
Query: 227 AD------DDIVKLVDTFPGQSID 244
D D IV + + F G ++
Sbjct: 422 LDFTGELADKIVNMTEGFTGADLE 445
>gi|384486828|gb|EIE79008.1| hypothetical protein RO3G_03713 [Rhizopus delemar RA 99-880]
Length = 834
Score = 45.4 bits (106), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 38/159 (23%), Positives = 70/159 (44%), Gaps = 19/159 (11%)
Query: 64 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 123
+WG G GK+ + V + N I + EL + GE + +RQ + A +
Sbjct: 596 LWGPPGCGKTLLAKAVANESNTNFISVKGPELLNKYVGESERGVRQVFARA----RASAP 651
Query: 124 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 183
C + ++LDA R Q + ++VN L +L G+ N+ + V +I
Sbjct: 652 CVIFFDELDALCSRRDD-QQTDASARVVNTLL---------TELDGVENRSQ---VYVIA 698
Query: 184 TGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCKGI 220
N + ++R GR++K + PT ++R+ + K +
Sbjct: 699 ATNRPDMIDPAMLRPGRLDKLLYVELPTPQERLDILKKL 737
Score = 42.0 bits (97), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 41/148 (27%), Positives = 69/148 (46%), Gaps = 13/148 (8%)
Query: 56 IKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 115
++ P + + G G GK+ + ++G+ +SA + SG +GE K IR+ + EA
Sbjct: 211 VQPPRGVLLHGPPGCGKTKLAHAIAGELGVPFFNISAPSIVSGMSGESEKKIREVFEEAR 270
Query: 116 DIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEE 175
D C L I+++DA + T Q + ++V A L+ D+ + + K
Sbjct: 271 D----NAPCLLFIDEIDAITPKR-ETAQREMERRIV-AQLLTCMDDLS-------WEKCN 317
Query: 176 NPRVPIIVTGNDFSTLYAPLIRDGRMEK 203
N V II N +L A L R GR ++
Sbjct: 318 NKPVMIIGATNRPDSLDAALRRAGRFDR 345
>gi|215259685|gb|ACJ64334.1| 26S proteasome regulatory complex ATPase RPT4 [Culex tarsalis]
Length = 323
Score = 45.4 bits (106), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 44/186 (23%), Positives = 89/186 (47%), Gaps = 20/186 (10%)
Query: 64 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 123
++G G GK+ V +++ N + + + + GE A+LIR+ + A D +
Sbjct: 109 LYGPPGTGKTSLARAVASQLDANFLKVVSSAIVDKYIGESARLIREMFNYARD----HQP 164
Query: 124 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 183
C + ++++DA GR ++ T ++ + TLM + + Q+ G + +V +I+
Sbjct: 165 CIIFMDEIDALGGRR--FSEGTSADREIQRTLMELLN-----QMDGF---DSLGQVKMIM 214
Query: 184 TGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCK----GIFRNDNVADDDIVKLVDT 237
N TL L+R GR+++ P + R+ + K I ++ ++ + +VKL D
Sbjct: 215 ATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLEILKIHAGPIAKHGDIDYEAVVKLSDN 274
Query: 238 FPGQSI 243
F G +
Sbjct: 275 FNGADL 280
>gi|126659176|ref|ZP_01730315.1| ATPase, AAA family protein [Cyanothece sp. CCY0110]
gi|126619583|gb|EAZ90313.1| ATPase, AAA family protein [Cyanothece sp. CCY0110]
Length = 530
Score = 45.4 bits (106), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 49/201 (24%), Positives = 85/201 (42%), Gaps = 29/201 (14%)
Query: 53 LPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYR 112
+PN K L+ GI +G GKS + + + + + + G L G GE +RQ +
Sbjct: 270 IPNPKGVLLAGI---QGTGKSLSAKTIAHEWRLPLLRLDTGRLFGGIVGESESRVRQMIQ 326
Query: 113 EAADIIKKGKMCCLMINDLDAGAGRMG-GTTQYTVNNQMVNATLMNIADNPTCVQLPGMY 171
A I C L I+++D G + G + ++ V +L+ +
Sbjct: 327 IAEAIAP----CVLWIDEIDKAFGNISSGVDGDSGTSRRVFGSLIT-------------W 369
Query: 172 NKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW-----APTREDRIGVCKGIFRNDNV 226
+E+ V I+ T N+ L A L+R GR ++ ++ A RE+ V R +
Sbjct: 370 MQEKTSPVFIVATANNVKILPAELLRKGRFDEIFFLNLPTAKEREEIFKVHIQRLRPSRL 429
Query: 227 ADDDIVKL---VDTFPGQSID 244
D ++ KL + F G I+
Sbjct: 430 RDFNLTKLAAAANNFSGAEIE 450
>gi|126140372|ref|XP_001386708.1| 26S protease subunit RPT4 (26S protease subunit SUG2) (Proteasomal
cap subunit) [Scheffersomyces stipitis CBS 6054]
gi|126093992|gb|ABN68679.1| 26S protease subunit RPT4 (26S protease subunit SUG2) (Proteasomal
cap subunit) [Scheffersomyces stipitis CBS 6054]
Length = 416
Score = 45.4 bits (106), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 38/148 (25%), Positives = 70/148 (47%), Gaps = 14/148 (9%)
Query: 56 IKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 115
IK P + ++G G GK+ + V A +G N I A + GE A+LIR+ + A
Sbjct: 191 IKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASAIVDKYIGESARLIREMFAYA- 249
Query: 116 DIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEE 175
++ + C + ++++DA GR ++ T ++ + TLM + + G
Sbjct: 250 ---REHEPCIIFMDEVDAIGGRR--FSEGTSADREIQRTLMELLNQMDGFDTLG------ 298
Query: 176 NPRVPIIVTGNDFSTLYAPLIRDGRMEK 203
+ +I+ N TL L+R GR+++
Sbjct: 299 --QTKVIMATNRPDTLDPALLRAGRLDR 324
>gi|307151949|ref|YP_003887333.1| AAA ATPase [Cyanothece sp. PCC 7822]
gi|306982177|gb|ADN14058.1| AAA ATPase central domain protein [Cyanothece sp. PCC 7822]
Length = 504
Score = 45.4 bits (106), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 49/206 (23%), Positives = 86/206 (41%), Gaps = 40/206 (19%)
Query: 53 LPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYR 112
LP+ + L++GI +G GKS + + + + + G L G GE R R
Sbjct: 256 LPHPRGLLLVGI---QGTGKSLTAKAISHHWHLPLLRLDVGRLFGGLVGES----ESRTR 308
Query: 113 EAADIIKKGKMCCLMINDLDAGAGRM-----GGTTQYTVNNQMVNATLMNIADNPTCVQL 167
+ ++ + C L I+++D + GGTT V T +N
Sbjct: 309 QMINLAEALAPCVLWIDEIDKAFAGVDGKGDGGTTS------RVFGTFIN---------- 352
Query: 168 PGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCK---GIFR 222
+ E+ V ++ T N+ + L ++R GR ++ ++ PT+E+R+ + R
Sbjct: 353 ---WLAEKKSPVFVVATANNIAALPPEMLRKGRFDEIFFVGLPTQEERVAIFSVHLSRLR 409
Query: 223 NDNVADDDIVKLVDTFPGQSIDFFGA 248
N+ DI +L P DF GA
Sbjct: 410 PHNLKQYDINRLAYETP----DFSGA 431
>gi|156938218|ref|YP_001436014.1| ATPase AAA [Ignicoccus hospitalis KIN4/I]
gi|156567202|gb|ABU82607.1| AAA family ATPase, CDC48 subfamily [Ignicoccus hospitalis KIN4/I]
Length = 729
Score = 45.4 bits (106), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 48/195 (24%), Positives = 83/195 (42%), Gaps = 20/195 (10%)
Query: 49 NFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIR 108
F + I+ P + ++G G GK+ + + N I + E+ S GE K IR
Sbjct: 489 EFFTEMGIEPPKGILLFGPPGTGKTLLAKAAATESQANFIAVRGPEILSKWVGESEKAIR 548
Query: 109 QRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLP 168
+ +R+A ++ + +++D+ A R G + +++VN L
Sbjct: 549 EIFRKA----RQAAPTIVFFDEIDSIAARRGKDVSGVI-DRIVNQLLTE----------- 592
Query: 169 GMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPT--REDRIGVCKGIFRNDNV 226
M E RV +I N L L+R GR ++ + P ++ R+ + K R +
Sbjct: 593 -MDGIEPLQRVTVIAATNRPDLLDPALLRPGRFDRLIYVPPPDKKARLEIFKVHTRRMPL 651
Query: 227 ADD-DIVKLVDTFPG 240
ADD D+ KL D G
Sbjct: 652 ADDVDLEKLADMTQG 666
>gi|428779319|ref|YP_007171105.1| AAA ATPase [Dactylococcopsis salina PCC 8305]
gi|428693598|gb|AFZ49748.1| AAA+ family ATPase [Dactylococcopsis salina PCC 8305]
Length = 545
Score = 45.4 bits (106), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 43/173 (24%), Positives = 77/173 (44%), Gaps = 27/173 (15%)
Query: 53 LPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYR 112
+P K L++GI +G GKS + + + + + + G L G GE R R
Sbjct: 280 IPTPKGLLLVGI---QGTGKSLSAKTIAHEWRVPLLRLDTGRLFGGIVGES----ESRVR 332
Query: 113 EAADIIKKGKMCCLMINDLDAGAGRM-GGTTQYTVNNQMVNATLMNIADNPTCVQLPGMY 171
+ + + C L I+++D G + G + + +Q V +L+ +
Sbjct: 333 QMIQLSEAMSPCILWIDEIDKAFGSINSGVSGDSGTSQRVFGSLIT-------------W 379
Query: 172 NKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCKGIFR 222
+E+ V I+ T N+ L A L+R GR ++ ++ PT ++R K IFR
Sbjct: 380 MQEKTQPVFIVATANNVEVLPAELLRKGRFDETFFINLPTEKER----KAIFR 428
>gi|428776831|ref|YP_007168618.1| AAA ATPase [Halothece sp. PCC 7418]
gi|428691110|gb|AFZ44404.1| AAA ATPase central domain protein [Halothece sp. PCC 7418]
Length = 515
Score = 45.4 bits (106), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 43/173 (24%), Positives = 77/173 (44%), Gaps = 27/173 (15%)
Query: 53 LPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYR 112
+P K L++GI +G GKS + + + + + + G L G GE R R
Sbjct: 250 IPTPKGLLLVGI---QGTGKSLSAKTIAHEWRVPLLKLDTGRLFGGIVGES----ESRVR 302
Query: 113 EAADIIKKGKMCCLMINDLDAGAGRM-GGTTQYTVNNQMVNATLMNIADNPTCVQLPGMY 171
+ + + C L I+++D G + G + + +Q V +L+ +
Sbjct: 303 QMIQLSEAMSPCILWIDEIDKAFGSINSGVSGDSGTSQRVFGSLIT-------------W 349
Query: 172 NKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCKGIFR 222
+E+ V I+ T N+ L A L+R GR ++ ++ PT ++R K IFR
Sbjct: 350 MQEKTQPVFIVATANNVEVLPAELLRKGRFDETFFINLPTEKER----KAIFR 398
>gi|334120952|ref|ZP_08495028.1| AAA ATPase central domain protein [Microcoleus vaginatus FGP-2]
gi|333455671|gb|EGK84314.1| AAA ATPase central domain protein [Microcoleus vaginatus FGP-2]
Length = 545
Score = 45.4 bits (106), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 41/169 (24%), Positives = 77/169 (45%), Gaps = 23/169 (13%)
Query: 53 LPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYR 112
+PN K L++GI +G GKS + + ++ + + + G L G GE +RQ +
Sbjct: 282 IPNPKGVLLVGI---QGTGKSLSAKTIASEWRLPLLRLDTGRLFGGVVGESESRVRQMIQ 338
Query: 113 EAADIIKKGKMCCLMINDLDAGAGR-MGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMY 171
A I C L I+++D G + G+ + ++ V +L+ +
Sbjct: 339 LAEAIAP----CVLWIDEIDKAFGNIISGSDGDSGTSRRVFGSLIT-------------W 381
Query: 172 NKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCK 218
+E+ V I+ T N+ L A L+R GR ++ ++ P+ +R + K
Sbjct: 382 MQEKTSPVFIVATANNVRILPAELLRKGRFDEIFFLNLPSESERQDIFK 430
>gi|330795954|ref|XP_003286035.1| 26S protease regulatory subunit S10B [Dictyostelium purpureum]
gi|325084033|gb|EGC37471.1| 26S protease regulatory subunit S10B [Dictyostelium purpureum]
Length = 393
Score = 45.4 bits (106), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 45/189 (23%), Positives = 89/189 (47%), Gaps = 20/189 (10%)
Query: 56 IKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 115
IK P + ++G G GK+ + + + N + + + + GE A++IR+ + A
Sbjct: 168 IKPPKGVLLYGPPGTGKTLLARAIASNLEANFLKVVSSAIVDKYIGESARVIREMFGYAR 227
Query: 116 DIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEE 175
D + C + ++++DA GR ++ T ++ + TLM + + Q+ G +
Sbjct: 228 D----HQPCVIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGFDTLQ- 275
Query: 176 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRED--RIGVCK----GIFRNDNVADD 229
+V II+ N L L+R GR+++ P + R+ V K I ++ ++ D
Sbjct: 276 --KVKIIMATNRPDVLDPALLRPGRLDRKIEIPLPNEAGRVDVLKIHASSITKHGDIDYD 333
Query: 230 DIVKLVDTF 238
+ KL D+F
Sbjct: 334 ALSKLCDSF 342
>gi|194748363|ref|XP_001956616.1| GF24499 [Drosophila ananassae]
gi|190623898|gb|EDV39422.1| GF24499 [Drosophila ananassae]
Length = 398
Score = 45.4 bits (106), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 45/186 (24%), Positives = 87/186 (46%), Gaps = 20/186 (10%)
Query: 64 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 123
++G G GK+ + +++ N + + + + GE A+LIR+ + A D +
Sbjct: 181 LYGPPGTGKTLLARAIASQLDANFLKVVSSAIVDKYIGESARLIREMFAYARD----HQP 236
Query: 124 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 183
C + ++++DA GR ++ T ++ + TLM + + Q+ G + +V +I+
Sbjct: 237 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGF---DALGQVKMIM 286
Query: 184 TGNDFSTLYAPLIRDGRMEKFYWAP-----TREDRIGVCKG-IFRNDNVADDDIVKLVDT 237
N TL L+R GR+++ P R D + + G + + V + IVKL D
Sbjct: 287 ATNRPDTLDPALLRPGRLDRKLEIPLPNEVARMDILKIHAGPLAKRGEVDYEAIVKLSDL 346
Query: 238 FPGQSI 243
F G +
Sbjct: 347 FNGADL 352
>gi|340345795|ref|ZP_08668927.1| AAA family ATPase, CDC48 subfamily [Candidatus Nitrosoarchaeum
koreensis MY1]
gi|339520936|gb|EGP94659.1| AAA family ATPase, CDC48 subfamily [Candidatus Nitrosoarchaeum
koreensis MY1]
Length = 714
Score = 45.4 bits (106), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 54/218 (24%), Positives = 93/218 (42%), Gaps = 28/218 (12%)
Query: 55 NIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREA 114
N++ P + + G G GK+ + + N I + EL S GE K +R+ +R+A
Sbjct: 482 NVESPKGILLHGPPGTGKTLIAKALAKMTESNFISIKGPELLSKWVGESEKGVREIFRKA 541
Query: 115 ADIIKKGKMCCLMINDLDAGAGRMG-GTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNK 173
++ C + ++++DA R G G + V +V+ L I G+
Sbjct: 542 ----RQAAPCIIFLDEVDALVPRRGSGDSSSHVTENVVSQILTEID---------GL--- 585
Query: 174 EENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDR-------IGVCKGIFRNDNV 226
EE V II N + L+R GR ++ PT + + I K +D V
Sbjct: 586 EELHNVLIIGATNRLDIIDEALLRPGRFDRIIEVPTPDSKGRQHIFEIHTKKKPLASD-V 644
Query: 227 ADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISG 264
+ +V+L D F G I A+ R +++++SG
Sbjct: 645 SIAKLVELTDGFSGAEI---AAVANRAAITALKRYVSG 679
>gi|24745880|dbj|BAC23035.1| 26S proteasome AAA-ATPase subunit RPT4a [Solanum tuberosum]
gi|76160929|gb|ABA40428.1| 26S proteasome AAA-ATPase subunit RPT4a-like protein [Solanum
tuberosum]
Length = 398
Score = 45.4 bits (106), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 45/191 (23%), Positives = 90/191 (47%), Gaps = 20/191 (10%)
Query: 56 IKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 115
IK P + ++G G GK+ + + + N + + + + GE A+LIR+ + A
Sbjct: 169 IKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFNYAR 228
Query: 116 DIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEE 175
D + C + ++++DA GR ++ T ++ + TLM + + QL G ++
Sbjct: 229 D----HQPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QLDGF---DQ 274
Query: 176 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCK----GIFRNDNVADD 229
+V +I+ N L L+R GR+++ P + R+ + K GI ++ + +
Sbjct: 275 LGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYE 334
Query: 230 DIVKLVDTFPG 240
+KL + F G
Sbjct: 335 AAIKLAEGFNG 345
>gi|427706264|ref|YP_007048641.1| AAA ATPase [Nostoc sp. PCC 7107]
gi|427358769|gb|AFY41491.1| AAA ATPase central domain protein [Nostoc sp. PCC 7107]
Length = 504
Score = 45.4 bits (106), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 46/201 (22%), Positives = 81/201 (40%), Gaps = 30/201 (14%)
Query: 53 LPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYR 112
LP+ + L++GI +G GKS + + + + + G L G GE R R
Sbjct: 256 LPHPRGLLLVGI---QGTGKSLTAKAIAHHWHLPLLRLDVGRLFGGLVGESES----RTR 308
Query: 113 EAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYN 172
+ + + C L I+++D +G +++ + +A
Sbjct: 309 QMIQVAEALAPCVLWIDEIDKAFSGLGSKGDAGTTSRVFGTFITWLA------------- 355
Query: 173 KEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDR---IGVCKGIFRNDNVA 227
E+ V ++ T ND L ++R GR ++ ++ PT+E+R V R N+
Sbjct: 356 -EKTSPVFVVATANDIQALPPEMLRKGRFDEIFFVGLPTQEERKAIFNVHLSRLRPHNLK 414
Query: 228 DDDIVKLVDTFPGQSIDFFGA 248
DI +L P DF GA
Sbjct: 415 SYDIDRLAYETP----DFSGA 431
>gi|242093540|ref|XP_002437260.1| hypothetical protein SORBIDRAFT_10g023770 [Sorghum bicolor]
gi|241915483|gb|EER88627.1| hypothetical protein SORBIDRAFT_10g023770 [Sorghum bicolor]
Length = 398
Score = 45.4 bits (106), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 45/194 (23%), Positives = 92/194 (47%), Gaps = 20/194 (10%)
Query: 56 IKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 115
IK P + ++G G GK+ + + + N + + + + GE A+LIR+ + A
Sbjct: 169 IKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFNYA- 227
Query: 116 DIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEE 175
++ + C + ++++DA GR ++ T ++ + TLM + + QL G +E
Sbjct: 228 ---REHQPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QLDGF---DE 274
Query: 176 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCK----GIFRNDNVADD 229
+V +I+ N L L+R GR+++ P + R+ V K GI ++ + +
Sbjct: 275 LGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQGRMEVLKIHAVGIAKHGEIDYE 334
Query: 230 DIVKLVDTFPGQSI 243
++ L + F G +
Sbjct: 335 AVINLAEGFNGADL 348
>gi|170591993|ref|XP_001900754.1| 26S proteasome regulatory chain 4 [Brugia malayi]
gi|158591906|gb|EDP30509.1| 26S proteasome regulatory chain 4, putative [Brugia malayi]
Length = 727
Score = 45.4 bits (106), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 39/149 (26%), Positives = 68/149 (45%), Gaps = 17/149 (11%)
Query: 64 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQ-RYREAADIIKKGK 122
++G G GK+ + V I ++ +L N+G+ +KL+RQ +RE I ++
Sbjct: 507 LYGEPGTGKTLLAKAVAHSTSATFIRVTGADLIQKNSGDGSKLVRQYSFRELFRIARESV 566
Query: 123 MCCLMINDLDAGAGRMGGTTQYTVN---NQMVNATLMNIADNPTCVQLPGMYNKEENPRV 179
C + I+++DA GT +Y + V T++ + + QL G E V
Sbjct: 567 PCIIFIDEIDA-----VGTKRYDTTCGGEREVQRTMLELLN-----QLDGF---ESRGDV 613
Query: 180 PIIVTGNDFSTLYAPLIRDGRMEKFYWAP 208
+I+ N L LIR GR+++ P
Sbjct: 614 KVIMATNRIDVLDPALIRPGRIDRKIELP 642
>gi|385804130|ref|YP_005840530.1| AAA ATPase [Haloquadratum walsbyi C23]
gi|339729622|emb|CCC40894.1| AAA-type ATPase (CDC48 subfamily) [Haloquadratum walsbyi C23]
Length = 765
Score = 45.4 bits (106), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 35/149 (23%), Positives = 63/149 (42%), Gaps = 23/149 (15%)
Query: 64 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 123
++G G GK+ + + IN + ++ EL GE K +R+ + A ++
Sbjct: 530 LYGPPGTGKTLLARAIAGEAEINFVEVAGPELLDRYVGESEKAVREVFERA----RQAAP 585
Query: 124 CCLMINDLDA-GAGRMGGTTQYTVNNQMVNATLMN---IADNPTCVQLPGMYNKEENPRV 179
+ +++DA A R GG T V +++V+ L I D+P V
Sbjct: 586 AIIFFDEIDAVAANRAGGGTDSGVGDRVVSQLLTELDRITDHPNLV-------------- 631
Query: 180 PIIVTGNDFSTLYAPLIRDGRMEKFYWAP 208
++ N T+ + L+R GR+E P
Sbjct: 632 -VLAATNRRDTIDSALLRPGRLESHIAVP 659
>gi|385773898|ref|YP_005646465.1| AAA ATPase [Sulfolobus islandicus HVE10/4]
gi|385776540|ref|YP_005649108.1| AAA ATPase [Sulfolobus islandicus REY15A]
gi|323475288|gb|ADX85894.1| AAA family ATPase, CDC48 subfamily [Sulfolobus islandicus REY15A]
gi|323478013|gb|ADX83251.1| AAA family ATPase, CDC48 subfamily [Sulfolobus islandicus HVE10/4]
Length = 769
Score = 45.4 bits (106), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 47/176 (26%), Positives = 78/176 (44%), Gaps = 18/176 (10%)
Query: 56 IKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 115
I+ P + ++G G GK+ + V + G N I + E+ S GE K +R+ +R+A
Sbjct: 496 IEPPKGILLFGPPGTGKTMLAKAVATESGANFIAVRGPEILSKWVGESEKAVREIFRKA- 554
Query: 116 DIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEE 175
+ + +++D+ A G + V ++VN L ++ G+ K E
Sbjct: 555 ---RMYAPAVIFFDEIDSIAPIRGISYDSGVTERIVNQLL---------AEMDGI-EKLE 601
Query: 176 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPT--REDRIGVCKGIFRNDNVADD 229
N V +I N L L+R GR EK + P R RI + K RN + +D
Sbjct: 602 N--VVVIAATNRPDILDPALLRPGRFEKLIYVPPPDRRARIEILKVHTRNIVLGED 655
>gi|255727749|ref|XP_002548800.1| protein AFG2 [Candida tropicalis MYA-3404]
gi|240133116|gb|EER32672.1| protein AFG2 [Candida tropicalis MYA-3404]
Length = 770
Score = 45.4 bits (106), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 46/206 (22%), Positives = 94/206 (45%), Gaps = 21/206 (10%)
Query: 41 KLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNA 100
+L + +++F +L + P + ++G G K+ + + + G+N + + E+ +
Sbjct: 522 QLPLEASQSFANL-GVSSPKGVLLYGPPGCSKTLTAKALATESGLNFLAVKGPEIFNKYV 580
Query: 101 GEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIAD 160
GE + IR+ +R+A + + +++DA AG G + T + ++ +L+N D
Sbjct: 581 GESERTIREIFRKA----RAASPSIIFFDEIDAIAGDRDGDSSTTAASNVL-TSLLNEID 635
Query: 161 NPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCK 218
EE V I+ N + + L+R GR+++ + P E R+ + +
Sbjct: 636 -----------GVEELKGVVIVGATNKPTEIDPALLRPGRLDRHIYVAPPDYEARLQILQ 684
Query: 219 GIFRNDNVADDDI--VKLVDTFPGQS 242
RN N+ D++ KL D G S
Sbjct: 685 KCTRNFNLDKDEVALTKLADLTEGCS 710
>gi|345006630|ref|YP_004809483.1| adenosinetriphosphatase [halophilic archaeon DL31]
gi|344322256|gb|AEN07110.1| Adenosinetriphosphatase [halophilic archaeon DL31]
Length = 756
Score = 45.4 bits (106), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 37/157 (23%), Positives = 60/157 (38%), Gaps = 22/157 (14%)
Query: 55 NIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREA 114
N P + + G G GK+ + + G+N + ++ EL GE K +R+ + A
Sbjct: 529 NTTPPTGVLLHGSPGTGKTLLARAIAGESGVNFLQVAGPELLDRYVGESEKAVRELFERA 588
Query: 115 ADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMN---IADNPTCVQLPGMY 171
++ + ++LDA G GG V ++V+ L +ADNP V L
Sbjct: 589 ----RQAAPSIVFFDELDAIGGERGGGNDSGVGERVVSQLLTELDRVADNPGIVTLAATN 644
Query: 172 NKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAP 208
K + L+R GR E P
Sbjct: 645 RK---------------GAIDPALLRPGRFESHVRVP 666
>gi|110668654|ref|YP_658465.1| AAA-type ATPase (transitional ATPase homolog) [Haloquadratum
walsbyi DSM 16790]
gi|109626401|emb|CAJ52861.1| AAA-type ATPase (CDC48 subfamily) [Haloquadratum walsbyi DSM 16790]
Length = 765
Score = 45.4 bits (106), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 35/149 (23%), Positives = 63/149 (42%), Gaps = 23/149 (15%)
Query: 64 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 123
++G G GK+ + + IN + ++ EL GE K +R+ + A ++
Sbjct: 530 LYGPPGTGKTLLARAIAGEAEINFVEVAGPELLDRYVGESEKAVREVFERA----RQAAP 585
Query: 124 CCLMINDLDA-GAGRMGGTTQYTVNNQMVNATLMN---IADNPTCVQLPGMYNKEENPRV 179
+ +++DA A R GG T V +++V+ L I D+P V
Sbjct: 586 AIIFFDEIDAVAANRAGGGTDSGVGDRVVSQLLTELDRITDHPNLV-------------- 631
Query: 180 PIIVTGNDFSTLYAPLIRDGRMEKFYWAP 208
++ N T+ + L+R GR+E P
Sbjct: 632 -VLAATNRRDTIDSALLRPGRLESHIAVP 659
>gi|14520611|ref|NP_126086.1| cell division protein CDC48 [Pyrococcus abyssi GE5]
gi|5457827|emb|CAB49317.1| Cdc48 cell division control protein 48, AAA family [Pyrococcus
abyssi GE5]
gi|380741139|tpe|CCE69773.1| TPA: cell division protein CDC48 [Pyrococcus abyssi GE5]
Length = 795
Score = 45.1 bits (105), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 45/168 (26%), Positives = 73/168 (43%), Gaps = 19/168 (11%)
Query: 64 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 123
++G G GK+ + V + N I + E+ S GE K IR+ +R+A ++
Sbjct: 555 LYGPPGTGKTLLAKAVATESQANFIAVRGPEILSKWVGESEKNIREIFRKA----RQAAP 610
Query: 124 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 183
+ I+++DA A R GT V ++++N L M +EN V +I
Sbjct: 611 TVIFIDEIDAIAPRR-GTDVNRVTDRIINQLLTE------------MDGIQENAGVVVIA 657
Query: 184 TGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCKGIFRNDNVADD 229
N L L+R GR ++ AP + R + K R +ADD
Sbjct: 658 ATNRPDILDPALLRPGRFDRLILVPAPDEKARFEIFKVHTRGMPLADD 705
>gi|383620992|ref|ZP_09947398.1| proteasome-activating nucleotidase [Halobiforma lacisalsi AJ5]
gi|448692507|ref|ZP_21696346.1| proteasome-activating nucleotidase [Halobiforma lacisalsi AJ5]
gi|445787519|gb|EMA38260.1| proteasome-activating nucleotidase [Halobiforma lacisalsi AJ5]
Length = 410
Score = 45.1 bits (105), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 52/206 (25%), Positives = 87/206 (42%), Gaps = 24/206 (11%)
Query: 64 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 123
++G G GK+ + V K I M+ EL GE ++L+R + ++ ++ +
Sbjct: 191 LYGPPGTGKTMLAKAVANKTDATFIKMAGSELVRKFIGEGSRLVRDLF----EMAREREP 246
Query: 124 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 183
+ I+++DA A + T + V T+M + L M E + II
Sbjct: 247 AIIFIDEIDAIA--TTRSESKTSGDAEVQRTMMQL--------LSEMDGFEPRGEIRIIA 296
Query: 184 TGNDFSTLYAPLIRDGRMEKFYWAPT--REDRIGVCKGIFRNDNVADD-DIVKL---VDT 237
N F L ++R GR ++ P R+ R + + R+ NV+DD D +L D
Sbjct: 297 ATNRFDMLDRAILRPGRFDRLIEVPEPDRDGREQILEIHTRDMNVSDDVDFAELADETDE 356
Query: 238 FPGQSIDFF----GALRARVYDDEVR 259
+ G I+ G R DEVR
Sbjct: 357 YSGADIESLATEAGMFAIRNERDEVR 382
>gi|119510147|ref|ZP_01629286.1| hypothetical protein N9414_00785 [Nodularia spumigena CCY9414]
gi|119465208|gb|EAW46106.1| hypothetical protein N9414_00785 [Nodularia spumigena CCY9414]
Length = 504
Score = 45.1 bits (105), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 46/201 (22%), Positives = 82/201 (40%), Gaps = 30/201 (14%)
Query: 53 LPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYR 112
LP+ + ++LGI +G GKS + + + + + G L G GE R R
Sbjct: 257 LPHPRGLMLLGI---QGTGKSLTAKAIAHHWHLPLLRLDVGRLFGGLVGES----ESRTR 309
Query: 113 EAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYN 172
+ + + C L I+++D G +G +++ + +A
Sbjct: 310 QMIQVAEALAPCVLWIDEIDKGFSGLGAKGDAGTASRVFGTFITWLA------------- 356
Query: 173 KEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDR---IGVCKGIFRNDNVA 227
E+ V ++ T ND L ++R GR ++ ++ PT+++R V R N+
Sbjct: 357 -EKTSPVFVVSTANDIQALPPEMLRKGRFDEIFFVGLPTQDERKAIFNVHLSRLRPHNLK 415
Query: 228 DDDIVKLVDTFPGQSIDFFGA 248
DI +L P DF GA
Sbjct: 416 SYDIDRLAYETP----DFSGA 432
>gi|328869555|gb|EGG17933.1| 26S protease regulatory subunit S10B [Dictyostelium fasciculatum]
Length = 393
Score = 45.1 bits (105), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 46/189 (24%), Positives = 88/189 (46%), Gaps = 20/189 (10%)
Query: 56 IKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 115
IK P + ++G G GK+ + + + N + + + + GE A++IR+ + A
Sbjct: 168 IKPPKGVLLYGPPGTGKTLLARAIASNIEANFLKVVSSAIVDKYIGESARVIREMFGYAR 227
Query: 116 DIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEE 175
D + C + ++++DA GR ++ T ++ + TLM + + Q+ G +
Sbjct: 228 D----HQPCVIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGFDTLQ- 275
Query: 176 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRED--RIGVCK----GIFRNDNVADD 229
+V II+ N L L+R GR+++ P + R+ V K I ++ +V D
Sbjct: 276 --KVKIIMATNRPDVLDPALLRPGRLDRKIEIPLPNEAGRVDVLKIHASSITKHGDVDYD 333
Query: 230 DIVKLVDTF 238
+ KL D F
Sbjct: 334 AVAKLADGF 342
>gi|50307971|ref|XP_453984.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49643119|emb|CAG99071.1| KLLA0E00837p [Kluyveromyces lactis]
Length = 814
Score = 45.1 bits (105), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 48/188 (25%), Positives = 86/188 (45%), Gaps = 26/188 (13%)
Query: 56 IKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 115
I P + +WG G GK+ + V + N I + EL + GE + IRQ + A
Sbjct: 545 ISAPAGVLLWGPPGCGKTLLAKAVANESRANFISIKGPELLNKYVGESERAIRQVFNRA- 603
Query: 116 DIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEE 175
+ C + ++LDA R + + ++++VN L +L G+
Sbjct: 604 ---RASVPCIIFFDELDALVPRRDASLSES-SSRVVNTLL---------TELDGL----- 645
Query: 176 NPRVPIIVTG--NDFSTLYAPLIRDGRMEK--FYWAPTREDRIGVCKGIFRNDN--VADD 229
N R I V G N + ++R GR++K F P E+++ + + + R++ +ADD
Sbjct: 646 NDRRGIFVVGATNRPDMIDPAMLRPGRLDKTLFIELPNFEEKVDIMRTLIRSNGTPIADD 705
Query: 230 -DIVKLVD 236
DI ++V+
Sbjct: 706 VDINRIVN 713
Score = 41.6 bits (96), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 52/218 (23%), Positives = 92/218 (42%), Gaps = 31/218 (14%)
Query: 64 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 123
+ G G GK+ + ++ + I +SA + SG +GE K IR+ + EA +
Sbjct: 238 LHGPPGCGKTSIANALAGELQVPFISISAPSVVSGMSGESEKKIRELFDEAKSLAP---- 293
Query: 124 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 183
C + +++DA + G Q + ++V A L+ D + ++ G P+IV
Sbjct: 294 CLVFFDEIDAITPKRDGGAQREMERRIV-AQLLTSMDELSFEKMEGK---------PVIV 343
Query: 184 TG--NDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCKGIFRNDNV-ADDDIVKLVDTF 238
G N +L A L R GR ++ P R + K + + + + D +KL
Sbjct: 344 IGATNRPDSLDAALRRAGRFDREICLNVPNETSRYFILKKMASSLKIDGEIDFIKLAKLT 403
Query: 239 PGQSIDFFGALRARVYDDEVRKWISGVGVGSIGKSLVN 276
PG F GA +++ I+ G +I + N
Sbjct: 404 PG----FVGA--------DLKALITAAGTCAIKRIFQN 429
>gi|302530613|ref|ZP_07282955.1| cell division protein CDC48 [Streptomyces sp. AA4]
gi|302439508|gb|EFL11324.1| cell division protein CDC48 [Streptomyces sp. AA4]
Length = 814
Score = 45.1 bits (105), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 41/183 (22%), Positives = 76/183 (41%), Gaps = 21/183 (11%)
Query: 64 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 123
++G G GK+F + +N + EL GE + +R +R AAD
Sbjct: 590 LYGPPGGGKTFLVRALAGTGALNVFAIKGAELLDKWVGESERAVRDLFRRAAD----AAP 645
Query: 124 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 183
+ ++++DA A R G ++ V +++V A L + + E R +++
Sbjct: 646 SLIFLDEIDALAPRRGQSSDSGVADRVVAALLTEL-------------DGVEPMREVVVL 692
Query: 184 TGNDFSTLYAP-LIRDGRMEKFYWAPT--REDRIGVCKGIFRNDNVADD-DIVKLVDTFP 239
+ L P L+R GR+E+ + P E R + ++ +A D D+ +
Sbjct: 693 GATNRPELVDPALLRPGRLERRIYVPPPDAESRAAILAATAKHTPLASDVDLAATAEALE 752
Query: 240 GQS 242
G S
Sbjct: 753 GYS 755
>gi|14521559|ref|NP_127035.1| cell division control protein [Pyrococcus abyssi GE5]
gi|5458778|emb|CAB50265.1| ATPase of the AAA+ family [Pyrococcus abyssi GE5]
gi|380742169|tpe|CCE70803.1| TPA: cell division control protein [Pyrococcus abyssi GE5]
Length = 840
Score = 45.1 bits (105), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 43/168 (25%), Positives = 73/168 (43%), Gaps = 18/168 (10%)
Query: 64 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 123
++G G GK+ + V + N I + E+ S GE K IR+ +R+A ++
Sbjct: 586 LYGPPGTGKTLLAKAVATESQANFIAIRGPEVLSKWVGESEKRIREIFRKA----RQASP 641
Query: 124 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 183
+ I+++DA A G V ++++N L ++ G+ EN V +I
Sbjct: 642 AIIFIDEIDAIAPARGTAEGEKVTDRIINQLL---------TEMDGLV---ENSGVVVIA 689
Query: 184 TGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCKGIFRNDNVADD 229
N L L+R GR ++ AP + R + K R +ADD
Sbjct: 690 ATNRPDILDPALLRPGRFDRLILVPAPDEKARFEIFKVHTRGMPLADD 737
>gi|408381747|ref|ZP_11179295.1| AAA ATPase [Methanobacterium formicicum DSM 3637]
gi|407815678|gb|EKF86248.1| AAA ATPase [Methanobacterium formicicum DSM 3637]
Length = 732
Score = 45.1 bits (105), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 43/169 (25%), Positives = 74/169 (43%), Gaps = 19/169 (11%)
Query: 64 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 123
I+G G GK+ + V + N I + EL S GE K +R+ +R+A ++
Sbjct: 517 IYGPPGTGKTLLAKAVANESKANFIAVKGPELLSKWVGESEKGVREVFRKA----RQTAP 572
Query: 124 CCLMINDLDA-GAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPII 182
+ +++D+ + R G ++ V ++VN L I G+ EE V +I
Sbjct: 573 TVIFFDEIDSIASARSGASSDSGVTQRVVNQLLTEI---------DGL---EELQDVAVI 620
Query: 183 VTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCKGIFRNDNVADD 229
N + L+R GR ++ P E R+ + K +N +ADD
Sbjct: 621 AATNRVDIMDPALLRPGRFDRHVKVNDPDEEARLAIFKVHTKNMPLADD 669
>gi|328769715|gb|EGF79758.1| hypothetical protein BATDEDRAFT_89162 [Batrachochytrium
dendrobatidis JAM81]
Length = 1081
Score = 45.1 bits (105), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 61/246 (24%), Positives = 104/246 (42%), Gaps = 34/246 (13%)
Query: 50 FMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQ 109
F S P +++ L ++G G GK+ V + G+N I + EL + G K +R
Sbjct: 761 FSSFP-LRLRSGLLLFGYPGCGKTMLASAVSKECGLNFISVKGPELLNKYIGASEKAVRD 819
Query: 110 RYREAADIIKKGKMCCLMINDLDAGAGRMG----GTTQYTVNNQMVNATLMNIADNPTCV 165
++ A + + CCL ++ D+ A R G G T VN + T M+ A+
Sbjct: 820 LFQRA----QSARPCCLFFDEFDSIAPRRGHDNTGVTDRVVNQML---TQMDGAEG---- 868
Query: 166 QLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCKGIFRN 223
L G++ R +I L+R GR++K P+R DR + + I +
Sbjct: 869 -LEGVFVLAATSRPDLIDPA---------LLRPGRLDKTILCDLPSRLDREDIIQTISKT 918
Query: 224 DNVADD-DIVKLVDTFPGQSIDFFGA-LRARVYDDEVRKWISGVGVGSIGKSLVNSKEAA 281
V+ I KL D Q+ F GA ++ +Y + +G +G+ L N+ +
Sbjct: 919 LAVSSSVSISKLAD----QTNGFSGADIQGMMYSAHLMAIRESMGDELVGQKLENADSSV 974
Query: 282 PTFEQP 287
+ P
Sbjct: 975 DDMDVP 980
>gi|341892365|gb|EGT48300.1| CBN-MAC-1 protein [Caenorhabditis brenneri]
Length = 831
Score = 45.1 bits (105), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 60/114 (52%), Gaps = 8/114 (7%)
Query: 41 KLVVHIT--KNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESG 98
+L +H+ K F +L + P + G G GK+ + V ++G+ + ++A EL SG
Sbjct: 236 RLAMHLKRPKTFATL-GVDPPRGFIVHGPPGCGKTLFAQAVAGELGLPMLQLAATELVSG 294
Query: 99 NAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVN 152
+GE + IR+ + D K+ C L+++D+DA A R T Q + ++V+
Sbjct: 295 VSGETEEKIRRLF----DTAKQNSPCILILDDIDAIAPRR-ETAQREMERRVVS 343
>gi|396081648|gb|AFN83263.1| 26S proteasome regulatory subunit 10 [Encephalitozoon romaleae
SJ-2008]
Length = 391
Score = 45.1 bits (105), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 48/194 (24%), Positives = 93/194 (47%), Gaps = 20/194 (10%)
Query: 56 IKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 115
++ P + ++G G GK+ +V A M +N + + + L GE +++IR+ + A
Sbjct: 166 VRAPKGVLLYGPPGTGKTLLARIVAATMDVNFLKVVSSALIEKYIGESSRMIREMFAYA- 224
Query: 116 DIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEE 175
++ C + ++++DA G+ + + + +++ V TLM + + QL G +N+ +
Sbjct: 225 ---RRKAPCIIFMDEIDAIGGKR--SRESSSSDREVQRTLMELLN-----QLDG-FNELD 273
Query: 176 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCKGIFRNDNVAD----D 229
N V +I+ N L L+R GR+++ P + R V K R N + D
Sbjct: 274 N--VKVIMATNRPDILDPALLRPGRLDRKIEIPLPNEQGRKEVLKIHSRPMNAIEEIDYD 331
Query: 230 DIVKLVDTFPGQSI 243
+VKL F G +
Sbjct: 332 SLVKLTAGFNGADL 345
>gi|336252474|ref|YP_004595581.1| AAA family ATPase [Halopiger xanaduensis SH-6]
gi|335336463|gb|AEH35702.1| AAA family ATPase, CDC48 subfamily [Halopiger xanaduensis SH-6]
Length = 743
Score = 45.1 bits (105), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 54/204 (26%), Positives = 90/204 (44%), Gaps = 26/204 (12%)
Query: 64 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 123
++G G GK+ + V + N I + +L S GE K IRQ +R+A +
Sbjct: 501 LYGPPGTGKTLMAKAVANETNANFISVRGPQLLSKWVGESEKAIRQTFRKARQV----SP 556
Query: 124 CCLMINDLDAGA-GRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPII 182
+ ++LDA A GR GG T V+ ++VN L +L G+ + E+ V +I
Sbjct: 557 TVIFFDELDALAPGRGGGETGSNVSERVVNQLL---------TELDGLEDMED---VMVI 604
Query: 183 VTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCKGIFRNDNVADD----DIVKLVD 236
N + L+R GR ++ P E R + + + +A D +I ++ D
Sbjct: 605 GATNRPDMIDPALLRSGRFDRLVMIGEPDVEGRERILEIHTEDTPLAADVSLREIAEITD 664
Query: 237 TFPG---QSIDFFGALRARVYDDE 257
+ G +SI A+ A D+E
Sbjct: 665 GYVGSDLESIAREAAIEALREDEE 688
>gi|212224263|ref|YP_002307499.1| CDC48/VCP [Thermococcus onnurineus NA1]
gi|212009220|gb|ACJ16602.1| Hypothetical CDC48/VCP [Thermococcus onnurineus NA1]
Length = 797
Score = 45.1 bits (105), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 44/168 (26%), Positives = 74/168 (44%), Gaps = 19/168 (11%)
Query: 64 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 123
++G G GK+ + V + N I + E+ S GE K IR+ +R+A ++
Sbjct: 556 LYGPPGTGKTLLAKAVATESEANFIAIRGPEVLSKWVGESEKNIREIFRKA----RQAAP 611
Query: 124 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 183
+ I+++DA A R GT V ++++N L M EN V +I
Sbjct: 612 TVIFIDEIDAIAPRR-GTDVNRVTDRLINQLLTE------------MDGIAENSGVVVIA 658
Query: 184 TGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCKGIFRNDNVADD 229
N + L+R GR ++ AP + R+ + K RN +A+D
Sbjct: 659 ATNRPDIIDPALLRPGRFDRLILVPAPDEKARLEIFKVHTRNVPLAED 706
>gi|410671277|ref|YP_006923648.1| Proteasome-activating nucleotidase [Methanolobus psychrophilus R15]
gi|409170405|gb|AFV24280.1| Proteasome-activating nucleotidase [Methanolobus psychrophilus R15]
Length = 429
Score = 45.1 bits (105), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 49/182 (26%), Positives = 75/182 (41%), Gaps = 17/182 (9%)
Query: 64 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 123
++G G GK+ + V + I + EL G+ AKL+R + A +K
Sbjct: 210 LYGDPGTGKTLLAKAVAHRTEATFIRVVGSELIQKYIGDGAKLVRDMFEMA----RKKSP 265
Query: 124 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 183
+ I++LDA A R T ++ V TLM + ++ G N+ + V II
Sbjct: 266 SIIFIDELDAIASRRLNDTNGA--DREVQRTLMQL-----LAEMDGFDNRGD---VRIIA 315
Query: 184 TGNDFSTLYAPLIRDGRMEKFYWAPT--REDRIGVCKGIFRNDNVADD-DIVKLVDTFPG 240
N L ++R GR ++ P E R + K R N+ DD D KL G
Sbjct: 316 ATNRLDVLDPAILRPGRFDRIVHVPMPDEEARTNILKIHSRFMNLGDDIDFSKLSRMTEG 375
Query: 241 QS 242
S
Sbjct: 376 MS 377
>gi|238926612|ref|ZP_04658372.1| AAA family ATPase [Selenomonas flueggei ATCC 43531]
gi|238885558|gb|EEQ49196.1| AAA family ATPase [Selenomonas flueggei ATCC 43531]
Length = 523
Score = 45.1 bits (105), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 43/205 (20%), Positives = 85/205 (41%), Gaps = 26/205 (12%)
Query: 48 KNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLI 107
++ + +K P + + G G GKS + + A+ + + ++ G+
Sbjct: 259 RSILREKGLKSPRGILLVGVPGCGKSLSAKAIAAQWKLPLYRLDFATVQGSYVGQ----T 314
Query: 108 RQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQL 167
Q+ ++A + C L I++++ G G T V+ +MV L
Sbjct: 315 EQQLKDALTTAENVAPCILWIDEIEKGLSGAGSTNDGGVSTRMVGQFLF----------- 363
Query: 168 PGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCKGIFRNDN 225
+ +E +V ++ T ND S L + L+R GR ++ ++ PT E+R + + R
Sbjct: 364 ---WLQECRKQVFVVATANDVSMLPSELLRRGRFDELFFVDLPTAEERHDILQLYMRKYL 420
Query: 226 VAD------DDIVKLVDTFPGQSID 244
D D +V + D F G ++
Sbjct: 421 GLDFAGAFADTLVAMTDGFTGADLE 445
>gi|448704017|ref|ZP_21700557.1| ATPase AAA [Halobiforma nitratireducens JCM 10879]
gi|445796633|gb|EMA47134.1| ATPase AAA [Halobiforma nitratireducens JCM 10879]
Length = 743
Score = 45.1 bits (105), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 55/204 (26%), Positives = 90/204 (44%), Gaps = 26/204 (12%)
Query: 64 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 123
++G G GK+ + V + N I + +L S GE K IRQ +R+A +
Sbjct: 501 LYGPPGTGKTLMAKAVANETNANFISVRGPQLLSKWVGESEKAIRQTFRKARQV----SP 556
Query: 124 CCLMINDLDAGA-GRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPII 182
+ ++LDA A GR GG T V+ ++VN L +L G+ EE V +I
Sbjct: 557 TVIFFDELDALAPGRGGGETGSNVSERVVNQLL---------TELDGL---EEMEDVMVI 604
Query: 183 VTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCKGIFRNDNVADD----DIVKLVD 236
N + L+R GR ++ P E R + + ++ +A D +I ++ D
Sbjct: 605 GATNRPDMIDPALLRSGRFDRLVMIGEPDVEGRERILEIHTQDTPLAADVTLQEIAEITD 664
Query: 237 TFPG---QSIDFFGALRARVYDDE 257
+ G +SI A+ A D+E
Sbjct: 665 GYVGSDLESIAREAAIEALREDEE 688
>gi|162606466|ref|XP_001713263.1| 26S proteasome AAA-ATPase subunit [Guillardia theta]
gi|12580729|emb|CAC27047.1| 26S proteasome AAA-ATPase subunit [Guillardia theta]
Length = 391
Score = 45.1 bits (105), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 39/151 (25%), Positives = 69/151 (45%), Gaps = 16/151 (10%)
Query: 64 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 123
++G G GK+ + + +K N I ++ EL GE +L+R ++ A K
Sbjct: 175 LYGEPGTGKTLLAKAIASKTKANFIKITGSELVQKFLGEGPRLVRDLFKTA----HKLSP 230
Query: 124 CCLMINDLDA-GAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPII 182
C + ++++DA G R T ++ + V T++ + + QL G N + II
Sbjct: 231 CIIFMDEIDAIGTIR---TDSHSEGEKEVQRTMLELLN-----QLDGFTT---NQNIKII 279
Query: 183 VTGNDFSTLYAPLIRDGRMEKFYWAPTREDR 213
+ N TL LIR GR+++ +DR
Sbjct: 280 MATNRIDTLDPALIRPGRIDRKIEFSLPDDR 310
>gi|256016691|emb|CAR63641.1| putative 26S proteasome regulatory chain 4 [Angiostrongylus
cantonensis]
Length = 435
Score = 45.1 bits (105), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 38/159 (23%), Positives = 77/159 (48%), Gaps = 16/159 (10%)
Query: 56 IKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 115
I P + ++G G GK+ + V I + +L N+G+ AKL+R+ ++ A
Sbjct: 211 ITAPKGVILYGEPGTGKTLLAKAVANSTSATFIRATGADLVQKNSGDGAKLVRELFKMA- 269
Query: 116 DIIKKGKMCCLMINDLDA-GAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKE 174
K+ C + ++++DA G R +++ Q V TL+ + + QL G ++
Sbjct: 270 ---KESAPCIVFLDEIDAVGTKRFDTSSR---GEQEVQRTLLELLN-----QLDGFESRG 318
Query: 175 ENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDR 213
+ V +I+ N +L + L+R GR+++ P +++
Sbjct: 319 D---VKVILATNRIDSLDSALLRPGRIDRKIELPKPDEK 354
>gi|218246552|ref|YP_002371923.1| ATPase AAA [Cyanothece sp. PCC 8801]
gi|257059591|ref|YP_003137479.1| AAA ATPase [Cyanothece sp. PCC 8802]
gi|218167030|gb|ACK65767.1| AAA ATPase central domain protein [Cyanothece sp. PCC 8801]
gi|256589757|gb|ACV00644.1| AAA ATPase central domain protein [Cyanothece sp. PCC 8802]
Length = 504
Score = 45.1 bits (105), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 46/201 (22%), Positives = 82/201 (40%), Gaps = 30/201 (14%)
Query: 53 LPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYR 112
LP+ + L++GI +G GKS + + + + + G L G GE R R
Sbjct: 256 LPHPRGLLLVGI---QGTGKSLTAKAISHHWHLPLLRLDVGRLFGGLVGESES----RTR 308
Query: 113 EAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYN 172
+ + + C L I+++D G + G +++ + +A
Sbjct: 309 QMISLAEALSPCVLWIDEIDKAFGGVDGKGDSGTTSRVFGTFITWLA------------- 355
Query: 173 KEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDR---IGVCKGIFRNDNVA 227
E+ V ++ T N+ L ++R GR ++ ++ PT+E+R V R N+
Sbjct: 356 -EKQSPVFVVATANNIQALPPEMLRKGRFDEIFFVGLPTQEEREAIFNVHLSRLRPHNLK 414
Query: 228 DDDIVKLVDTFPGQSIDFFGA 248
DI +L P DF GA
Sbjct: 415 SYDIKRLAYETP----DFSGA 431
>gi|81299807|ref|YP_400015.1| FtsH peptidase [Synechococcus elongatus PCC 7942]
gi|81168688|gb|ABB57028.1| FtsH peptidase homologue, chloroplast. Metallo peptidase. MEROPS
family M41 [Synechococcus elongatus PCC 7942]
Length = 632
Score = 45.1 bits (105), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 46/180 (25%), Positives = 76/180 (42%), Gaps = 26/180 (14%)
Query: 57 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAD 116
++P + + G G GK+ + + + G+ MS E G A +R +R+A
Sbjct: 199 RIPRGVLLVGPPGTGKTLLAKAIAGEAGVPFFSMSGSEFVEMFVGVGASRVRDLFRKA-- 256
Query: 117 IIKKGKMCCLMINDLDA-----GAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMY 171
K+ C + I+++DA GAG GG + Q +N L M
Sbjct: 257 --KENSPCIVFIDEIDAVGRQRGAGIGGGNDE---REQTLNQLLTE------------MD 299
Query: 172 NKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCKGIFRNDNVADD 229
EEN V II N L + L+R GR ++ P+ R+G+ + RN +A++
Sbjct: 300 GFEENSGVIIIAATNRPDVLDSALLRPGRFDRQITVDLPSYNGRLGILQVHARNKKLAEE 359
>gi|433589699|ref|YP_007279195.1| 26S proteasome subunit P45 family [Natrinema pellirubrum DSM 15624]
gi|448332706|ref|ZP_21521935.1| proteasome-activating nucleotidase [Natrinema pellirubrum DSM
15624]
gi|433304479|gb|AGB30291.1| 26S proteasome subunit P45 family [Natrinema pellirubrum DSM 15624]
gi|445625681|gb|ELY79036.1| proteasome-activating nucleotidase [Natrinema pellirubrum DSM
15624]
Length = 410
Score = 45.1 bits (105), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 43/168 (25%), Positives = 72/168 (42%), Gaps = 16/168 (9%)
Query: 64 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 123
++G G GK+ + V + I M+ EL GE ++L+R + ++ ++ +
Sbjct: 191 LYGPPGTGKTMLAKAVANETDATFIKMAGSELVRKFIGEGSRLVRDLF----EMARERQP 246
Query: 124 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 183
+ I+++DA A R T T + V T+M + L M E V II
Sbjct: 247 AIIFIDEIDAIATRR--TESKTSGDAEVQRTMMQL--------LSEMDGFEARGEVRIIA 296
Query: 184 TGNDFSTLYAPLIRDGRMEKFYWAPT--REDRIGVCKGIFRNDNVADD 229
N F L ++R GR ++ P E R + + R NV+DD
Sbjct: 297 ATNRFDMLDRAILRPGRFDRLIEVPEPDAEGREQILEIHTRTMNVSDD 344
>gi|448299775|ref|ZP_21489782.1| proteasome-activating nucleotidase [Natronorubrum tibetense GA33]
gi|445586929|gb|ELY41197.1| proteasome-activating nucleotidase [Natronorubrum tibetense GA33]
Length = 410
Score = 45.1 bits (105), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 44/175 (25%), Positives = 76/175 (43%), Gaps = 16/175 (9%)
Query: 56 IKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 115
I+ P + ++G G GK+ + V + I M+ EL GE ++L+R +
Sbjct: 183 IEPPSGVLLYGPPGTGKTMLAKAVANETDATFIKMAGSELVRKFIGEGSRLVRDLF---- 238
Query: 116 DIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEE 175
++ ++ + + I+++DA A T T + V T+M + L M E
Sbjct: 239 EMAREREPAIIFIDEIDAIA--TTRTESKTSGDAEVQRTMMQL--------LSEMDGFEA 288
Query: 176 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPT--REDRIGVCKGIFRNDNVAD 228
+ II N F L ++R GR ++ P R+ R + + RN NVAD
Sbjct: 289 RGEIRIIAATNRFDMLDRAILRPGRFDRLIEVPEADRDGREQILEIHTRNMNVAD 343
>gi|327350812|gb|EGE79669.1| ribosome biogenesis ATPase RIX7 [Ajellomyces dermatitidis ATCC
18188]
Length = 725
Score = 45.1 bits (105), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 48/200 (24%), Positives = 84/200 (42%), Gaps = 19/200 (9%)
Query: 56 IKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 115
I P + +WG G GK+ + V + N I + EL + GE + +RQ + A
Sbjct: 495 ITAPTGVLLWGPPGCGKTLLAKAVANESRANFISVKGPELLNKYVGESERAVRQVFVRAR 554
Query: 116 DIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEE 175
+ C + ++LDA R T + ++VN L + + Q G+Y
Sbjct: 555 SSVP----CVIFFDELDALVPRRDDTLS-EASARVVNTLLTELDGLGSARQ--GIY---- 603
Query: 176 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCKGIFRNDNVA-DDDIV 232
+I N + ++R GR+E + PT ++R+ + + + R + DDI
Sbjct: 604 -----VIAATNRPDIIDPAMLRPGRLETLLFVNLPTADERVEILQTLLRKMPIEFSDDIK 658
Query: 233 KLVDTFPGQSIDFFGALRAR 252
+L + G S G+L R
Sbjct: 659 ELARSCEGFSGADLGSLLRR 678
Score = 40.0 bits (92), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 50/95 (52%), Gaps = 5/95 (5%)
Query: 40 DKLVVHITK-NFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESG 98
D +V+ +T+ S ++ P + + G G GK+ A++G+ I +SA + SG
Sbjct: 191 DLIVLPMTRPQVYSSSKVQPPRGVLLHGPPGCGKTMIANAFAAELGVPFIAISAPSIVSG 250
Query: 99 NAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDA 133
+GE K +R+ + EA KK C + I+++DA
Sbjct: 251 MSGESEKALREHFDEA----KKVAPCLIFIDEIDA 281
>gi|448410103|ref|ZP_21575052.1| cell division control protein 48/AAA family ATPase [Halosimplex
carlsbadense 2-9-1]
gi|445672383|gb|ELZ24959.1| cell division control protein 48/AAA family ATPase [Halosimplex
carlsbadense 2-9-1]
Length = 756
Score = 45.1 bits (105), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 55/230 (23%), Positives = 99/230 (43%), Gaps = 26/230 (11%)
Query: 64 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 123
++G G GK+ + + + N I + EL + GE K +R+ + +A +
Sbjct: 505 MYGPPGTGKTLLAKAIANEAQSNFISIKGPELLNKFVGESEKGVREVFEKA----RANAP 560
Query: 124 CCLMINDLDAGAGRMGG-TTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPII 182
+ +++D+ AG GG TT V ++V+ L +L G+ EE V +I
Sbjct: 561 TVVFFDEIDSIAGERGGNTTDSGVGERVVSQLL---------TELDGL---EELEDVVVI 608
Query: 183 VTGNDFSTLYAPLIRDGRMEKFYWAPT--REDRIGVCKGIFRNDNVAD----DDIVKLVD 236
T N + + L+R GR+++ P E R + + R+ +A+ DD+ D
Sbjct: 609 ATTNRPDLIDSALLRPGRLDRHVHVPVPDEEGRRKIFEVHTRDKPLAEGVDLDDLAARTD 668
Query: 237 TFPGQSIDFFGALRARVYDDEVRKWISGVGVGSIGKSLVNSKEAAPTFEQ 286
+ G I+ A+ R++++ V IG S+ N K FE
Sbjct: 669 GYVGADIE---AVTREASMAATREFLASVDPEDIGDSVGNVKVTMDHFEH 715
>gi|435850742|ref|YP_007312328.1| AAA family ATPase, CDC48 subfamily [Methanomethylovorans hollandica
DSM 15978]
gi|433661372|gb|AGB48798.1| AAA family ATPase, CDC48 subfamily [Methanomethylovorans hollandica
DSM 15978]
Length = 743
Score = 45.1 bits (105), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 40/161 (24%), Positives = 68/161 (42%), Gaps = 18/161 (11%)
Query: 55 NIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREA 114
N P + ++G G GK+ + V ++ N I + EL S GE K +R+ +R+A
Sbjct: 479 NTTPPRGILLFGPPGTGKTMLAKAVASESEANFISIKGPELLSKYVGESEKAVRETFRKA 538
Query: 115 ADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKE 174
K+ + +++DA A G +T V ++V+ L I E
Sbjct: 539 ----KQAAPTVIFFDEIDAMAPERGASTDAHVTERVVSQILTEID------------GVE 582
Query: 175 ENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDR 213
E V +I N + L+R GR ++ + P +E R
Sbjct: 583 ELKDVVVIAATNRPDIIDPALLRPGRFDRLIYVKPPEKEGR 623
>gi|221059143|ref|XP_002260217.1| peptidase [Plasmodium knowlesi strain H]
gi|193810290|emb|CAQ41484.1| peptidase, putative [Plasmodium knowlesi strain H]
Length = 702
Score = 45.1 bits (105), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 67/152 (44%), Gaps = 17/152 (11%)
Query: 57 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAD 116
K+P + + G G GK+ + + + I S E E G A+ IR+ ++ A
Sbjct: 281 KLPKGILLSGEPGTGKTLIARAIAGEANVPFIQASGSEFEEMFVGVGARRIRELFQAA-- 338
Query: 117 IIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEEN 176
KK C + I+++DA G+ + +N V TL N V+L G E+N
Sbjct: 339 --KKHAPCIVFIDEIDA-----VGSKRSNRDNSAVRMTL-----NQLLVELDGF---EQN 383
Query: 177 PRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAP 208
+ +I N +L L+R GR++K P
Sbjct: 384 EGIVVICATNFPQSLDKALVRPGRLDKTIVVP 415
>gi|171684681|ref|XP_001907282.1| hypothetical protein [Podospora anserina S mat+]
gi|170942301|emb|CAP67953.1| unnamed protein product [Podospora anserina S mat+]
Length = 390
Score = 45.1 bits (105), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 47/194 (24%), Positives = 90/194 (46%), Gaps = 20/194 (10%)
Query: 56 IKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 115
IK P + ++G G GK+ V + + N + + A + GE A+LIR+ + A
Sbjct: 165 IKPPKGVLLYGPPGTGKTLLARAVASSLETNFLKVVASAIVDKYIGESARLIREMFGYA- 223
Query: 116 DIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEE 175
K+ + C + ++++DA GR ++ T ++ + TLM + + QL G +
Sbjct: 224 ---KEHEPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QLDGF---DY 270
Query: 176 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRED--RIGVCK----GIFRNDNVADD 229
+ II+ N TL L+R GR+++ P + R+ + K G+ + + +
Sbjct: 271 LGKTKIIMATNRPDTLDPALLRAGRLDRKIEIPLPNEVGRLEILKIHAAGVAKEGEIDFE 330
Query: 230 DIVKLVDTFPGQSI 243
+VK+ D G +
Sbjct: 331 SVVKMSDGLNGADL 344
>gi|149238059|ref|XP_001524906.1| ribosome biogenesis ATPase RIX7 [Lodderomyces elongisporus NRRL
YB-4239]
gi|146451503|gb|EDK45759.1| ribosome biogenesis ATPase RIX7 [Lodderomyces elongisporus NRRL
YB-4239]
Length = 832
Score = 45.1 bits (105), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 46/181 (25%), Positives = 81/181 (44%), Gaps = 24/181 (13%)
Query: 56 IKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 115
I P + +WG G GK+ + V + N I + EL + GE K +RQ ++ A
Sbjct: 555 ITAPSGVLMWGPPGCGKTLLAKAVANESRANFISIKGPELLNKYVGESEKAVRQVFQRA- 613
Query: 116 DIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEE 175
+ C + ++LDA R + + ++++VN L +L G+
Sbjct: 614 ---RASTPCIIFFDELDALVPRRDNSMSES-SSRVVNTLL---------TELDGL----- 655
Query: 176 NPRVPIIVTG--NDFSTLYAPLIRDGRMEK--FYWAPTREDRIGVCKGIFR-NDNVADDD 230
N R + V G N + ++R GR++K + PT ++R + K I R N + D+D
Sbjct: 656 NDRKGVFVIGATNRPDMIDPAMLRPGRLDKTLYIQLPTPDERFEILKTIVRANQSPIDND 715
Query: 231 I 231
+
Sbjct: 716 V 716
Score = 40.8 bits (94), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 36/142 (25%), Positives = 68/142 (47%), Gaps = 16/142 (11%)
Query: 64 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 123
++G G GK+ + ++ + I +SA + SG +GE K +R + EA +
Sbjct: 234 LYGPPGCGKTTVANALAGELKVPFINISAPSIVSGMSGESEKKLRDLFEEAKSVAP---- 289
Query: 124 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 183
C + ++++DA + G Q + ++V A L+ + D +++ NK P+IV
Sbjct: 290 CIIFMDEIDAITPKRDGGAQREMERRIV-AQLLTLMDE---LRMENTNNK------PVIV 339
Query: 184 TG--NDFSTLYAPLIRDGRMEK 203
G N +L + L R GR ++
Sbjct: 340 IGATNRPDSLDSALRRAGRFDR 361
>gi|448379037|ref|ZP_21561001.1| proteasome-activating nucleotidase [Haloterrigena thermotolerans
DSM 11522]
gi|445665599|gb|ELZ18275.1| proteasome-activating nucleotidase [Haloterrigena thermotolerans
DSM 11522]
Length = 410
Score = 45.1 bits (105), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 43/168 (25%), Positives = 72/168 (42%), Gaps = 16/168 (9%)
Query: 64 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 123
++G G GK+ + V + I M+ EL GE ++L+R + ++ ++ +
Sbjct: 191 LYGPPGTGKTMLAKAVANETDATFIKMAGSELVRKFIGEGSRLVRDLF----EMARERQP 246
Query: 124 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 183
+ I+++DA A R T T + V T+M + L M E V II
Sbjct: 247 AIIFIDEIDAIATRR--TESKTSGDAEVQRTMMQL--------LSEMDGFEARGEVRIIA 296
Query: 184 TGNDFSTLYAPLIRDGRMEKFYWAPT--REDRIGVCKGIFRNDNVADD 229
N F L ++R GR ++ P E R + + R NV+DD
Sbjct: 297 ATNRFDMLDRAILRPGRFDRLIEVPEPDAEGREQILEIHTRTMNVSDD 344
>gi|326676750|ref|XP_003200668.1| PREDICTED: peroxisome biogenesis factor 1-like [Danio rerio]
Length = 1237
Score = 45.1 bits (105), Expect = 0.062, Method: Composition-based stats.
Identities = 57/220 (25%), Positives = 99/220 (45%), Gaps = 24/220 (10%)
Query: 50 FMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQ 109
F SLP + +L ++G G GK+ V + G+N I + EL S G + +R
Sbjct: 822 FSSLPLRQCSGVL-LYGAPGTGKTLLAGAVAKESGMNFISIKGPELLSKYIGASEQAVRD 880
Query: 110 RYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPG 169
++ A ++ K C L ++ D+ A R G V +++VN L QL G
Sbjct: 881 VFQRA----QQAKPCILFFDEFDSLAPRRGHDNT-GVTDRVVNQLL---------TQLDG 926
Query: 170 MYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCKGIFRNDNVA 227
+ E V ++ + + L+R GR++K + P R R+ + + + + +A
Sbjct: 927 V---EGLTGVYVLAASSRPDLIDPALLRPGRLDKSLYCPPPDRAARLEILRALTHSVPLA 983
Query: 228 DDDIVKLVDTFPGQSIDFFGA-LRARVYDDEVRKWISGVG 266
D V L D G + F GA L+A +Y+ ++ S +G
Sbjct: 984 AD--VDL-DQIAGATELFTGADLKALLYNAQLEAIHSSLG 1020
>gi|56750555|ref|YP_171256.1| ATP-dependent Zn protease [Synechococcus elongatus PCC 6301]
gi|56685514|dbj|BAD78736.1| ATP-dependent Zn protease [Synechococcus elongatus PCC 6301]
Length = 632
Score = 45.1 bits (105), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 46/180 (25%), Positives = 76/180 (42%), Gaps = 26/180 (14%)
Query: 57 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAD 116
++P + + G G GK+ + + + G+ MS E G A +R +R+A
Sbjct: 199 RIPRGVLLVGPPGTGKTLLAKAIAGEAGVPFFSMSGSEFVEMFVGVGASRVRDLFRKA-- 256
Query: 117 IIKKGKMCCLMINDLDA-----GAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMY 171
K+ C + I+++DA GAG GG + Q +N L M
Sbjct: 257 --KENSPCIVFIDEIDAVGRQRGAGIGGGNDE---REQTLNQLLTE------------MD 299
Query: 172 NKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCKGIFRNDNVADD 229
EEN V II N L + L+R GR ++ P+ R+G+ + RN +A++
Sbjct: 300 GFEENSGVIIIAATNRPDVLDSALLRPGRFDRQITVDLPSYNGRLGILQVHARNKKLAEE 359
>gi|398410121|ref|XP_003856514.1| hypothetical protein MYCGRDRAFT_84010 [Zymoseptoria tritici IPO323]
gi|339476399|gb|EGP91490.1| hypothetical protein MYCGRDRAFT_84010 [Zymoseptoria tritici IPO323]
Length = 690
Score = 45.1 bits (105), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 43/173 (24%), Positives = 78/173 (45%), Gaps = 28/173 (16%)
Query: 39 MDKLVVHITKNFM-------SLPNIKVPLILGIW--GGKGQGKSFQCELVFAKMGINPIM 89
MD ++ +T+ + + P+ GI G G GK+ C A++ + I
Sbjct: 130 MDTMIKQMTRQLVMPIGRAAKFHEARYPMPKGILLHGPPGCGKTMLCRAYAAELKVPFIE 189
Query: 90 MSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQ 149
+ + SG +GE K +R+++ EA K+ C L I+++DA A + T+Q + +
Sbjct: 190 ILGPSIVSGMSGESEKAVREKFDEA----KRNAPCLLFIDEIDAIAPKR-DTSQSQMEKR 244
Query: 150 MVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTG--NDFSTLYAPLIRDGR 200
+V L++ M + +++P P+IV N +L L R GR
Sbjct: 245 IVAQLLVS------------MDDLQKDPSKPVIVLAATNRPDSLDPALRRGGR 285
>gi|320102094|ref|YP_004177685.1| AAA ATPase [Isosphaera pallida ATCC 43644]
gi|319749376|gb|ADV61136.1| AAA ATPase central domain protein [Isosphaera pallida ATCC 43644]
Length = 750
Score = 45.1 bits (105), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 41/163 (25%), Positives = 74/163 (45%), Gaps = 18/163 (11%)
Query: 58 VPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADI 117
+P + + G G GK+ + + +G ++S EL+S GE + +R+ +R+A
Sbjct: 328 IPKGIILHGPPGTGKTLFAKAIATALGAAVTIVSGPELKSKWVGESEENLRRVFRQA--- 384
Query: 118 IKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENP 177
++ ++ ++LD+ A R G V + MVN L ++ G + +E
Sbjct: 385 -RESAPAVIVFDELDSFAVRRGSYEGSGVEHSMVNQLL---------TEMDGFHAEE--- 431
Query: 178 RVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCK 218
V ++ T N +L L+R GR E P+ EDR + K
Sbjct: 432 LVFVVGTTNFAESLDPALLRPGRFEYHLHIPYPSAEDRRAIWK 474
>gi|195442534|ref|XP_002069009.1| GK12331 [Drosophila willistoni]
gi|194165094|gb|EDW79995.1| GK12331 [Drosophila willistoni]
Length = 403
Score = 45.1 bits (105), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 44/186 (23%), Positives = 88/186 (47%), Gaps = 20/186 (10%)
Query: 64 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 123
++G G GK+ V +++ +N + + + + GE A+ IR+ + A D +
Sbjct: 186 LYGPPGTGKTLLARAVASQLDVNFLKIVSSAIVDKYIGESARQIREMFAYARD----HQP 241
Query: 124 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 183
C + ++++DA GR ++ T ++ + TLM + + Q+ G + +V II+
Sbjct: 242 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGF---DALGQVKIIM 291
Query: 184 TGNDFSTLYAPLIRDGRMEKFYWAPTRED--RIGVCK----GIFRNDNVADDDIVKLVDT 237
N TL L+R GR+++ P + R+ + K + + ++ + IVKL D
Sbjct: 292 ATNRPDTLDPALLRPGRLDRKLEIPLPNETARMDILKIHAAPLAKEGDIDYEAIVKLSDR 351
Query: 238 FPGQSI 243
F G +
Sbjct: 352 FNGADL 357
>gi|66809637|ref|XP_638541.1| 26S protease regulatory subunit S10B [Dictyostelium discoideum AX4]
gi|74996881|sp|Q54PJ1.1|PRS10_DICDI RecName: Full=26S protease regulatory subunit 10B; AltName:
Full=26S proteasome AAA-ATPase subunit RPT4; AltName:
Full=Proteasome 26S subunit ATPase 6
gi|60467149|gb|EAL65185.1| 26S protease regulatory subunit S10B [Dictyostelium discoideum AX4]
Length = 393
Score = 45.1 bits (105), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 46/189 (24%), Positives = 88/189 (46%), Gaps = 20/189 (10%)
Query: 56 IKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 115
IK P + ++G G GK+ + + + N + + + + GE A++IR+ + A
Sbjct: 168 IKAPKGVLLYGPPGTGKTLLARAIASNLEANFLKVVSSAIVDKYIGESARVIREMFGYAR 227
Query: 116 DIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEE 175
D + C + ++++DA GR ++ T ++ + TLM + + Q+ G +
Sbjct: 228 D----HQPCVIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGF---DT 273
Query: 176 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRED--RIGVCK----GIFRNDNVADD 229
+V II+ N L L+R GR+++ P + R+ V K I ++ +V +
Sbjct: 274 LSKVKIIMATNRPDVLDPALLRPGRLDRKIEIPLPNEAGRVDVLKIHAANITKHGDVDYE 333
Query: 230 DIVKLVDTF 238
I KL D F
Sbjct: 334 AIAKLADGF 342
>gi|389853179|ref|YP_006355413.1| cell division protein CDC48 [Pyrococcus sp. ST04]
gi|388250485|gb|AFK23338.1| cell division protein CDC48 [Pyrococcus sp. ST04]
Length = 796
Score = 45.1 bits (105), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 44/168 (26%), Positives = 77/168 (45%), Gaps = 19/168 (11%)
Query: 64 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 123
++G G GK+ + V + N I + E+ S GE K IR+ +R+A ++
Sbjct: 556 LYGPPGTGKTLLAKAVATESEANFIAVRGPEILSKWVGESEKNIREIFRKA----RQAAP 611
Query: 124 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 183
+ I+++DA A R GT V ++++N L ++ G+ EN V +I
Sbjct: 612 TVIFIDEIDAIAPRR-GTDVNRVTDRIINQLL---------TEMDGLV---ENSGVVVIA 658
Query: 184 TGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCKGIFRNDNVADD 229
N + L+R GR ++ AP + R+ + K RN +A+D
Sbjct: 659 ATNRPDIIDPALLRPGRFDRLILVPAPDEKARLEIFKVHTRNMPLAED 706
>gi|340345279|ref|ZP_08668411.1| AAA family ATPase, CDC48 subfamily [Candidatus Nitrosoarchaeum
koreensis MY1]
gi|339520420|gb|EGP94143.1| AAA family ATPase, CDC48 subfamily [Candidatus Nitrosoarchaeum
koreensis MY1]
Length = 691
Score = 45.1 bits (105), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 56/233 (24%), Positives = 101/233 (43%), Gaps = 33/233 (14%)
Query: 13 YDYISQGLRTYNLD------NTIDGL-YIAPAFMDKLVVHITK--NFMSLPNIKVPLILG 63
+D I +R + ++ + + GL I + D L+V + + F + IK P
Sbjct: 402 HDVIPTAMREFYVERPKVWWHDVGGLDEIKKSLTDNLIVAMKEPTKFTKM-GIKPPKGAL 460
Query: 64 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 123
I+G G GK+ + + G N I++ E+ S GE K +R+ +R+A K
Sbjct: 461 IYGPPGCGKTLIARALATETGANMILVKGPEILSKWIGESEKAVREIFRKA----KTSSP 516
Query: 124 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 183
C ++ ++LD+ A G + V +++ L I + + RV +I
Sbjct: 517 CVVIFDELDSLARIKSG--EGGVGETVLSQLLTEIEEGTSS-------------RVAVIG 561
Query: 184 TGNDFSTLYAPLIRDGRMEKFYWAPTRED--RIGVCKGIFRNDNVADDDIVKL 234
N L L+R GR++ + P +D R+ + K + + +A D VKL
Sbjct: 562 ITNRPDVLDNSLLRTGRLDIVLYVPPPDDKGRLEIIKILTKKMPLASD--VKL 612
>gi|410910898|ref|XP_003968927.1| PREDICTED: peroxisome biogenesis factor 1-like [Takifugu rubripes]
Length = 1120
Score = 45.1 bits (105), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 57/224 (25%), Positives = 99/224 (44%), Gaps = 26/224 (11%)
Query: 50 FMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQ 109
F LP I++P + ++G G GK+ V + G+N I + EL S G + +R
Sbjct: 715 FSKLP-IRLPSGILLFGAPGTGKTLLARAVAKESGMNFISIKGPELLSKYIGASEQAVRD 773
Query: 110 RYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPG 169
++ A + K C L ++ D+ A R G + V +++VN L + D +Q G
Sbjct: 774 VFQRA----QAAKPCILFFDEFDSLAPRRGHDS-TGVTDRVVNQLLTQM-DGVEGLQ--G 825
Query: 170 MYNKEENPRVPIIVTGNDFSTLYAP-LIRDGRMEKFYWAPT--REDRIGVCKGIFRNDNV 226
+Y ++ L P L+R GR++K P E R+ + K + +
Sbjct: 826 VY----------VIAATSRPDLIDPALLRPGRLDKSLHCPPPDLEARVEILKALSAGVPM 875
Query: 227 ADDDIVKLVDTFPGQSIDFFGA-LRARVYDDEVRKWISGVGVGS 269
A D V+L + + F GA L+A +Y+ ++ S + S
Sbjct: 876 ATD--VEL-EKLAAATEQFTGADLKALLYNAQLEAMHSSMCANS 916
>gi|159478996|ref|XP_001697584.1| hypothetical protein CHLREDRAFT_120247 [Chlamydomonas reinhardtii]
gi|158274194|gb|EDO99977.1| predicted protein [Chlamydomonas reinhardtii]
Length = 501
Score = 45.1 bits (105), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 49/210 (23%), Positives = 84/210 (40%), Gaps = 17/210 (8%)
Query: 45 HITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPA 104
H + M+ + P + ++G G K+ V A+ G+N + + AGEL S GE
Sbjct: 290 HRAQAAMARLGAQPPRGVLLYGPPGCSKTLLARAVAAEAGLNFMSVKAGELVSKYVGESE 349
Query: 105 KLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTC 164
K I + A + + ++LD G GG Q + V+ ++ +
Sbjct: 350 KAIASLFARARAVAPS----IIFFDELDGLVGSRGGPDQTSAGGGGVSERVL----SQML 401
Query: 165 VQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIF--- 221
++ G+ ++ V ++ N + A L+R GR ++ + P D+ C I
Sbjct: 402 TEMDGLVDRGG---VTVLAATNRPDCVDAALLRPGRFDRLIFVPL-PDKEARCAHILRVH 457
Query: 222 --RNDNVADDDIVKLVDTFPGQSIDFFGAL 249
R AD D+ L G S GAL
Sbjct: 458 LRRTPTAADVDVPYLATRTAGYSGADLGAL 487
>gi|339627940|ref|YP_004719583.1| Vesicle-fusing ATPase [Sulfobacillus acidophilus TPY]
gi|379007573|ref|YP_005257024.1| Microtubule-severing ATPase [Sulfobacillus acidophilus DSM 10332]
gi|339285729|gb|AEJ39840.1| Vesicle-fusing ATPase [Sulfobacillus acidophilus TPY]
gi|361053835|gb|AEW05352.1| Microtubule-severing ATPase [Sulfobacillus acidophilus DSM 10332]
Length = 488
Score = 45.1 bits (105), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 39/143 (27%), Positives = 66/143 (46%), Gaps = 14/143 (9%)
Query: 91 SAGELESGNAGEPAKLIRQRYREAADIIKK-GKMCCLM-INDLDAGAGRMGGTTQYTVNN 148
S E AG A+ +RQ +R+A + K+ G+ ++ I++++ AGR G + +
Sbjct: 130 SGSEFVEVYAGVGAQRVRQLFRDARSLAKREGRQSAIIFIDEIEVMAGRRGQHQSHLEYD 189
Query: 149 QMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA- 207
Q +N L V++ GM E+ R+ +I N L L+R GR ++
Sbjct: 190 QTLNQLL---------VEMDGMAT-HEDVRILVIAATNRADLLDPALMRPGRFDRLVRVD 239
Query: 208 -PTREDRIGVCKGIFRNDNVADD 229
P RE R + +N +ADD
Sbjct: 240 LPDREGREAILALHTQNKPMADD 262
>gi|71019677|ref|XP_760069.1| hypothetical protein UM03922.1 [Ustilago maydis 521]
gi|46099715|gb|EAK84948.1| hypothetical protein UM03922.1 [Ustilago maydis 521]
Length = 288
Score = 45.1 bits (105), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 47/200 (23%), Positives = 91/200 (45%), Gaps = 21/200 (10%)
Query: 50 FMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQ 109
FM + IK P + ++G G GK+ V + + N + + + + GE A+LIR+
Sbjct: 58 FMRV-GIKPPKGVLLYGPPGTGKTLLARAVASTLETNFLKVVSSAIVDKYIGESARLIRE 116
Query: 110 RYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPG 169
+ A K+ + C + ++++DA GR ++ T ++ + TLM + + G
Sbjct: 117 MFGYA----KEHEPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLNQMDGFDYLG 170
Query: 170 MYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCK----GIFRN 223
+ +I+ N TL L+R GR+++ P + R+ + K + +
Sbjct: 171 --------KTKVIMATNRPDTLDPALMRPGRIDRKIEIPLPNEQSRLEILKIHTRPVAKK 222
Query: 224 DNVADDDIVKLVDTFPGQSI 243
+ + + IVKL D F G +
Sbjct: 223 EELDYEAIVKLSDGFNGADL 242
>gi|56750087|ref|YP_170788.1| hypothetical protein syc0078_d [Synechococcus elongatus PCC 6301]
gi|81300429|ref|YP_400637.1| ATPase [Synechococcus elongatus PCC 7942]
gi|56685046|dbj|BAD78268.1| hypothetical protein YCF46 [Synechococcus elongatus PCC 6301]
gi|81169310|gb|ABB57650.1| ATPase [Synechococcus elongatus PCC 7942]
Length = 501
Score = 45.1 bits (105), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 42/195 (21%), Positives = 82/195 (42%), Gaps = 26/195 (13%)
Query: 53 LPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYR 112
LP+ + L+ GI +G GKS + + + + + G L +G GE R R
Sbjct: 257 LPHPRGLLLAGI---QGTGKSLTAKAIAHYWHLPLLRLDVGRLFAGLVGESEA----RTR 309
Query: 113 EAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYN 172
+ I + C L I+++D + G N++ L +A+ + V
Sbjct: 310 QMIQIAEALSPCVLWIDEIDKAFAGLDGRGDSGTANRVFGTVLTWMAEKQSAVF------ 363
Query: 173 KEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCK---GIFRNDNVA 227
++ T N+ ++L L+R GR ++ ++ P +E+R + + R ++
Sbjct: 364 --------VVATANNVTSLPPELLRKGRFDEIFFVGLPNQEERRAIFEVHLNRLRPSSLR 415
Query: 228 DDDIVKLVDTFPGQS 242
+ D+ +L PG S
Sbjct: 416 NYDLERLAAATPGFS 430
>gi|428305577|ref|YP_007142402.1| AAA ATPase [Crinalium epipsammum PCC 9333]
gi|428247112|gb|AFZ12892.1| AAA ATPase central domain protein [Crinalium epipsammum PCC 9333]
Length = 544
Score = 45.1 bits (105), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 60/260 (23%), Positives = 109/260 (41%), Gaps = 41/260 (15%)
Query: 53 LPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYR 112
+PN K L++GI +G GKS + + ++ + + + +G L G GE +RQ +
Sbjct: 279 IPNPKGVLLVGI---QGTGKSLSAKTIASEWRLPLLRLDSGRLFGGIVGESESRVRQMIQ 335
Query: 113 EAADIIKKGKMCCLMINDLDAGAGRM-GGTTQYTVNNQMVNATLMNIADNPTCVQLPGMY 171
A + C L I+++D G + G + ++ V +L+ +
Sbjct: 336 LAEAMAP----CVLWIDEIDKAFGNISSGVDGDSGTSRRVFGSLIT-------------W 378
Query: 172 NKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APT---REDRIGVCKGIFRNDNV 226
+E+ V I+ T N+ L A L+R GR ++ ++ PT R++ V R +
Sbjct: 379 MQEKTSPVFIVATANNVQILPAELLRKGRFDEIFFLNLPTEIERQEIFKVHLQRLRPSRL 438
Query: 227 ADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISGVGVGSIGKS--------LVNSK 278
D D+ L + + +F GA +V D + + G+G G+ L + K
Sbjct: 439 RDFDLALLAKS----ASEFSGAEIEQVIIDAMHR---AFGLGENGQRRDFTTEDILHSIK 491
Query: 279 EAAPTFEQPRMTMEKLLEYG 298
E P R +E L +
Sbjct: 492 ETVPLAAIARHQIEDLKRWA 511
>gi|341898135|gb|EGT54070.1| hypothetical protein CAEBREN_07013 [Caenorhabditis brenneri]
Length = 831
Score = 44.7 bits (104), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 60/114 (52%), Gaps = 8/114 (7%)
Query: 41 KLVVHIT--KNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESG 98
+L +H+ K F +L + P + G G GK+ + V ++G+ + ++A EL SG
Sbjct: 236 RLAMHLKRPKTFATL-GVDPPRGFIVHGPPGCGKTLFAQAVAGELGLPMLQLAATELISG 294
Query: 99 NAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVN 152
+GE + IR+ + D K+ C L+++D+DA A R T Q + ++V+
Sbjct: 295 VSGETEEKIRRLF----DTAKQNSPCILILDDIDAIAPRR-ETAQREMERRVVS 343
>gi|86609273|ref|YP_478035.1| ATPase AAA [Synechococcus sp. JA-2-3B'a(2-13)]
gi|86557815|gb|ABD02772.1| ATPase, AAA family [Synechococcus sp. JA-2-3B'a(2-13)]
Length = 513
Score = 44.7 bits (104), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 47/175 (26%), Positives = 77/175 (44%), Gaps = 31/175 (17%)
Query: 53 LPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYR 112
LPN K L++GI +G GKS + + + + + + AG L +G GE +RQ +
Sbjct: 256 LPNPKGVLLVGI---QGTGKSLSAKTIANEWRLPLLRLDAGRLFAGIVGESESRVRQMIQ 312
Query: 113 EAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPG--- 169
A + C L I+++D G N T D+ T ++ G
Sbjct: 313 LAEAMAP----CVLWIDEIDKAFG---------------NITSSADGDSGTSRRVFGSLI 353
Query: 170 MYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCKGIFR 222
+ +E+ V I+ T N+ L L+R GR ++ ++ PT +R K IFR
Sbjct: 354 TWMQEKTSPVFIVATANNVPLLPPELLRKGRFDEIFFLNLPTHAER----KEIFR 404
>gi|344345580|ref|ZP_08776427.1| AAA ATPase central domain protein [Marichromatium purpuratum 984]
gi|343802848|gb|EGV20767.1| AAA ATPase central domain protein [Marichromatium purpuratum 984]
Length = 506
Score = 44.7 bits (104), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 38/147 (25%), Positives = 64/147 (43%), Gaps = 23/147 (15%)
Query: 60 LILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIK 119
L+LG+ GG GKS + V + G+ + + L GE K +RQ R A +
Sbjct: 277 LLLGVQGG---GKSLAAKAVAGRFGVALLRLDFATLYDKYIGETEKNLRQALRTAEVMAP 333
Query: 120 KGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRV 179
C L I++++ G G+ V +++ L +A E RV
Sbjct: 334 ----CVLWIDEIEKGLA--SGSGDDGVGRRVLGTLLTWMA--------------ERRARV 373
Query: 180 PIIVTGNDFSTLYAPLIRDGRMEKFYW 206
++ T ND S L L+R GR+++ ++
Sbjct: 374 FLVATANDVSRLPPELLRKGRIDELFF 400
>gi|313237262|emb|CBY19901.1| unnamed protein product [Oikopleura dioica]
Length = 690
Score = 44.7 bits (104), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 44/191 (23%), Positives = 87/191 (45%), Gaps = 27/191 (14%)
Query: 64 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 123
+ G G GK+ + + + G+N I + EL + GE + +R + A + K
Sbjct: 466 LTGPPGCGKTLLAKAIANESGLNFISVKGPELLNMYVGESERAVRSVFNRA----RSSKP 521
Query: 124 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 183
C + +++DA A R ++ N+ I N +L G+ EE V +I
Sbjct: 522 CVIFFDEIDALAPR---------RSEGANSGATRIV-NQLLTELDGL---EERKDVYVIA 568
Query: 184 TGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCKGIFRNDN----VADDDIVKLVDT 237
N + + ++R GR++K + P++ED + + + RN +D D+ K++D
Sbjct: 569 ATNRYEIIDPAVLRPGRLDKTVYVGLPSKEDIKQIIEKVTRNGAKPPFASDVDLEKIID- 627
Query: 238 FPGQSIDFFGA 248
+++++ GA
Sbjct: 628 ---KTVNYSGA 635
Score = 40.8 bits (94), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 39/152 (25%), Positives = 70/152 (46%), Gaps = 7/152 (4%)
Query: 27 NTIDGLYIAPAFMDKLVVHITK-NFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGI 85
+++ GL A + + ++H+ + S + P + + G G GK+ C+ ++G+
Sbjct: 145 SSVGGLSDAKETILRQMMHLHEPRIYSTLGVSPPSGILVHGAPGAGKTLLCKSSAGEIGV 204
Query: 86 NPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYT 145
I +S EL SG +G K IRQ + A K+ C + +++LDA T+
Sbjct: 205 KMICVSTPELVSGVSGGSEKNIRQLFENA----KENTPCIIFLDELDAICSSRDENTKEM 260
Query: 146 VNNQMVN-ATLMNIADNPTCVQLPGMYNKEEN 176
N + T M+ D+ + L G +K EN
Sbjct: 261 SNRIIAQILTCMDDVDSNEILVL-GATSKVEN 291
>gi|82540809|ref|XP_724694.1| ATP-dependent metalloprotease FtsH [Plasmodium yoelii yoelii 17XNL]
gi|23479426|gb|EAA16259.1| ATP-dependent metalloprotease FtsH, putative [Plasmodium yoelii
yoelii]
Length = 703
Score = 44.7 bits (104), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 67/152 (44%), Gaps = 17/152 (11%)
Query: 57 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAD 116
K+P + + G G GK+ + + + I S E E G A+ IR+ ++ A
Sbjct: 282 KLPKGILLSGEPGTGKTLIARAIAGEANVPFIQASGSEFEEMFVGVGARRIRELFQTA-- 339
Query: 117 IIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEEN 176
KK C + I+++DA G+ + +N V TL N V+L G E+N
Sbjct: 340 --KKHAPCIVFIDEIDA-----VGSKRSNRDNSAVRMTL-----NQLLVELDGF---EQN 384
Query: 177 PRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAP 208
+ +I N +L L+R GR++K P
Sbjct: 385 EGIVVICATNFPQSLDKALVRPGRLDKTIVVP 416
>gi|383318674|ref|YP_005379515.1| AAA ATPase [Methanocella conradii HZ254]
gi|379320044|gb|AFC98996.1| AAA family ATPase, CDC48 subfamily [Methanocella conradii HZ254]
Length = 740
Score = 44.7 bits (104), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 37/166 (22%), Positives = 75/166 (45%), Gaps = 16/166 (9%)
Query: 48 KNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLI 107
K+ + + + P + ++G G GK+ + V + N I + E+ S GE K +
Sbjct: 476 KDVFEVTHTRAPKGILVFGPPGTGKTLLAKAVANESEANFISVKGPEVLSKWVGESEKAV 535
Query: 108 RQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQL 167
R+ +R+A ++ + +++DA A GG+ V ++V+ L +L
Sbjct: 536 RETFRKA----RQSAPTIIFFDEIDAIAPTRGGSFDSHVTERVVSQLL---------TEL 582
Query: 168 PGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDR 213
G+ EE V ++ N + L+R GR+++ + P ++R
Sbjct: 583 DGL---EELHSVVVMAATNRPDMVDTALLRPGRLDRLLYIPPPDER 625
>gi|410084383|ref|XP_003959768.1| hypothetical protein KAFR_0L00260 [Kazachstania africana CBS 2517]
gi|372466361|emb|CCF60633.1| hypothetical protein KAFR_0L00260 [Kazachstania africana CBS 2517]
Length = 794
Score = 44.7 bits (104), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 49/188 (26%), Positives = 86/188 (45%), Gaps = 26/188 (13%)
Query: 56 IKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 115
I P + +WG G GK+ + V + N I + EL + GE + IRQ + A
Sbjct: 523 INAPAGVLLWGPPGCGKTLLAKAVANESRANFISIKGPELLNKYVGESERAIRQVFARAR 582
Query: 116 DIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEE 175
I C + ++LDA R T+ ++++VN L +L G+
Sbjct: 583 ASIP----CIIFFDELDALVPRR-DTSLSESSSRVVNTLL---------TELDGL----- 623
Query: 176 NPRVPIIVTG--NDFSTLYAPLIRDGRMEK--FYWAPTREDRIGVCKGIFRNDN--VADD 229
N R I V G N + ++R GR++K F P E+++ + K + R++ +A+D
Sbjct: 624 NDRRGIFVVGATNRPDMIDPAMLRPGRLDKTLFIELPNAEEKLDIFKTLIRSNGTPIAND 683
Query: 230 -DIVKLVD 236
D+ K+++
Sbjct: 684 VDLAKIIE 691
Score = 40.0 bits (92), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 51/198 (25%), Positives = 82/198 (41%), Gaps = 23/198 (11%)
Query: 56 IKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 115
I+ P + + G G GK+ + ++ + I +SA + SG +GE K +R ++EA
Sbjct: 214 IEPPRGVLLHGPPGCGKTTIANALAGELNVPFINISAPSIVSGMSGESEKKLRDVFQEAK 273
Query: 116 DIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEE 175
I C + +++DA + G Q + ++V A L+ D T G
Sbjct: 274 SIAP----CLIFFDEIDAITPKRDGGAQREMEKRIV-AQLLTSMDELTMEHTDGK----- 323
Query: 176 NPRVPIIVTG--NDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCKGIFRNDNV-ADDD 230
P+IV G N L + L R GR ++ P R+ + K + N + D
Sbjct: 324 ----PVIVIGATNRPDALDSALRRAGRFDREICLNVPNEISRLHILKKMASNLKIDGTID 379
Query: 231 IVKLVDTFPGQSIDFFGA 248
KL PG F GA
Sbjct: 380 FSKLAKLTPG----FVGA 393
>gi|451848921|gb|EMD62226.1| hypothetical protein COCSADRAFT_39001 [Cochliobolus sativus ND90Pr]
gi|451998748|gb|EMD91212.1| hypothetical protein COCHEDRAFT_1137748 [Cochliobolus
heterostrophus C5]
Length = 393
Score = 44.7 bits (104), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 49/194 (25%), Positives = 89/194 (45%), Gaps = 20/194 (10%)
Query: 56 IKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 115
IK P + ++G G GK+ V + + N + + + + GE A+LIR+ + A
Sbjct: 168 IKPPKGVLLYGPPGTGKTLLARAVASSLETNFLKVVSSAIVDKYIGESARLIREMFGYA- 226
Query: 116 DIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEE 175
K+ + C + ++++DA GR ++ T ++ + TLM + + QL G +
Sbjct: 227 ---KEHEPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QLDGF---DY 273
Query: 176 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPT-----REDRIGVCKGIFRNDNVAD-D 229
+ II+ N TL L+R GR+++ P R + + + G D D +
Sbjct: 274 LGQTKIIMATNRPDTLDPALLRAGRLDRKLEIPLPNEVGRLEILKIHSGSVVTDGEIDFE 333
Query: 230 DIVKLVDTFPGQSI 243
IVK+ D F G +
Sbjct: 334 SIVKMSDGFNGADL 347
>gi|195108917|ref|XP_001999039.1| GI23296 [Drosophila mojavensis]
gi|193915633|gb|EDW14500.1| GI23296 [Drosophila mojavensis]
Length = 393
Score = 44.7 bits (104), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 43/186 (23%), Positives = 87/186 (46%), Gaps = 20/186 (10%)
Query: 64 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 123
++G G GK+ + +++ N + + + + GE A+LIR+ + A D +
Sbjct: 176 LYGPPGTGKTLLARAIASQLDANFLKVVSSAIVDKYIGESARLIREMFSYARD----HQP 231
Query: 124 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 183
C + ++++DA GR ++ T ++ + TLM + + Q+ G + +V II+
Sbjct: 232 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGF---DALGQVKIIM 281
Query: 184 TGNDFSTLYAPLIRDGRMEKFYWAPTRED--RIGVCK----GIFRNDNVADDDIVKLVDT 237
N TL L+R GR+++ P + R+ + K + + + + +VKL D
Sbjct: 282 ATNRPDTLDPALLRPGRLDRKLEIPLPNEIARLDILKIHAAPLAKQGEIDYEAVVKLSDM 341
Query: 238 FPGQSI 243
F G +
Sbjct: 342 FNGADL 347
>gi|303389811|ref|XP_003073137.1| 26S proteasome regulatory subunit 10 [Encephalitozoon intestinalis
ATCC 50506]
gi|303302282|gb|ADM11777.1| 26S proteasome regulatory subunit 10 [Encephalitozoon intestinalis
ATCC 50506]
Length = 391
Score = 44.7 bits (104), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 45/194 (23%), Positives = 94/194 (48%), Gaps = 20/194 (10%)
Query: 56 IKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 115
++ P + ++G G GK+ +V A M +N + + + L GE +++IR+ + A
Sbjct: 166 VRAPKGVLLYGPPGTGKTLLARIVAATMDVNFLKVVSSALIEKYIGESSRMIREMFAYA- 224
Query: 116 DIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEE 175
K+ C + ++++DA G+ + + + +++ V TLM + + QL G +N+ +
Sbjct: 225 ---KRKAPCIIFMDEIDAIGGKR--SRESSSSDREVQRTLMELLN-----QLDG-FNELD 273
Query: 176 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPT-----REDRIGVCKGIFRN-DNVADD 229
N V +I+ N L L+R GR+++ P R++ + + + + + D
Sbjct: 274 N--VKVIMATNRPDILDPALLRPGRLDRKIEIPLPNEQGRKEVLKIHSKLMNAIEEIDYD 331
Query: 230 DIVKLVDTFPGQSI 243
+VKL F G +
Sbjct: 332 SLVKLTAGFNGADL 345
>gi|440798212|gb|ELR19280.1| ATPase, AAA domain containing protein [Acanthamoeba castellanii
str. Neff]
Length = 882
Score = 44.7 bits (104), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 50/194 (25%), Positives = 82/194 (42%), Gaps = 25/194 (12%)
Query: 56 IKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 115
I+ P + ++G G K+ + + + G N I + EL S GE + +R+ +R+A
Sbjct: 646 IRPPRGILLYGPPGCSKTLMAKALATESGANFIAVKGPELFSKWVGESERAVREVFRKA- 704
Query: 116 DIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEE 175
+ C + +++DA A GG + + +AD L M EE
Sbjct: 705 ---RAAAPCIIFFDEIDALAVHRGGGDEGS----------SGVADRVVSQLLTEMNGIEE 751
Query: 176 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW-----APTREDRIGVCKGIFRNDNVADDD 230
V ++ N + L+R GR+++ + AP+RE RI IF N DD
Sbjct: 752 LKNVTVVAATNRPDMIDKALLRPGRIDRMLYVSPPDAPSRE-RI---FQIFLNKTPHADD 807
Query: 231 IV--KLVDTFPGQS 242
I KL + G S
Sbjct: 808 IALPKLAELTEGYS 821
>gi|219116749|ref|XP_002179169.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217409060|gb|EEC48992.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 421
Score = 44.7 bits (104), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 45/193 (23%), Positives = 90/193 (46%), Gaps = 24/193 (12%)
Query: 56 IKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 115
IK P + ++G G GK+ + + + + + A + GE A++IR+ + A
Sbjct: 196 IKAPKGVLLYGPPGTGKTLLARALASNISATFLKVVASAIVDKYIGESARIIREMFGFAR 255
Query: 116 DIIKKGKMCCLMINDLDAGAGRMGGT--TQYTVNNQMVNATLMNIADNPTCVQLPGMYNK 173
D + C + ++++DA +GG+ ++ T ++ + TLM + + Q+ G
Sbjct: 256 D----HEPCVIFMDEIDA----IGGSRFSEGTSADREIQRTLMELLN-----QMDGF--- 299
Query: 174 EENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCK----GIFRNDNVA 227
EE +V +++ N L L+R GR+++ P R+ + K GI + ++
Sbjct: 300 EEQGQVKMVMATNRPDILDPALLRPGRLDRKIEIPEPNESQRLEILKIHASGITKRGDID 359
Query: 228 DDDIVKLVDTFPG 240
+ +VKL D G
Sbjct: 360 FESVVKLADGLNG 372
>gi|443475189|ref|ZP_21065146.1| AAA ATPase central domain protein [Pseudanabaena biceps PCC 7429]
gi|443019976|gb|ELS33990.1| AAA ATPase central domain protein [Pseudanabaena biceps PCC 7429]
Length = 498
Score = 44.7 bits (104), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 48/201 (23%), Positives = 81/201 (40%), Gaps = 30/201 (14%)
Query: 53 LPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYR 112
LP+ + L+ GI +G GKS + + + + + G L +G GE R R
Sbjct: 257 LPHPRGLLLAGI---QGTGKSLTAKAISHHWHLPLLRLDVGRLFAGLVGES----ESRTR 309
Query: 113 EAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYN 172
+ + + C L I+++D G N++ L +A
Sbjct: 310 QMIQLAEALSPCVLWIDEIDKAFAGTDGRGDSGTTNRVFGTFLTWMA------------- 356
Query: 173 KEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDR---IGVCKGIFRNDNVA 227
E+ V ++ T N+ TL L+R GR ++ ++ P++E+R V +R N
Sbjct: 357 -EKTSPVFVVATANNIRTLPPELLRKGRFDEVFFVGLPSQEERSQIFAVHLSKYRPHNTR 415
Query: 228 DDDIVKLVDTFPGQSIDFFGA 248
DI +L P DF GA
Sbjct: 416 AYDIDRLAYETP----DFSGA 432
>gi|260803780|ref|XP_002596767.1| hypothetical protein BRAFLDRAFT_114160 [Branchiostoma floridae]
gi|229282027|gb|EEN52779.1| hypothetical protein BRAFLDRAFT_114160 [Branchiostoma floridae]
Length = 392
Score = 44.7 bits (104), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 44/186 (23%), Positives = 88/186 (47%), Gaps = 20/186 (10%)
Query: 64 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 123
++G G GK+ V +++ N + + + + GE A+LIR+ + A D +
Sbjct: 175 LYGPPGTGKTLLARAVASQLDCNFLKVVSSAIVDKYIGESARLIREMFGYAKD----HQP 230
Query: 124 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 183
C + ++++DA GR ++ T ++ + TLM + + Q+ G + +V +I+
Sbjct: 231 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGF---DRLGKVKMIM 280
Query: 184 TGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCK----GIFRNDNVADDDIVKLVDT 237
N TL L+R GR+++ P + R+ + K + ++ + + IVKL D
Sbjct: 281 ATNRPDTLDPALLRPGRLDRKIQIDLPNEQARMDILKIHSGPMTKHGEIDYEAIVKLSDG 340
Query: 238 FPGQSI 243
F G +
Sbjct: 341 FNGADL 346
>gi|156363865|ref|XP_001626260.1| predicted protein [Nematostella vectensis]
gi|156213130|gb|EDO34160.1| predicted protein [Nematostella vectensis]
Length = 391
Score = 44.7 bits (104), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 43/186 (23%), Positives = 86/186 (46%), Gaps = 20/186 (10%)
Query: 64 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 123
++G G GK+ V +++ N + + + + GE A+LIR+ + A D +
Sbjct: 174 LFGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIREMFGYARD----HEP 229
Query: 124 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 183
C + ++++DA GR ++ T ++ + TLM + + + G +V +I+
Sbjct: 230 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLNQMDGFDVLG--------QVKMIM 279
Query: 184 TGNDFSTLYAPLIRDGRMEKF--YWAPTREDRIGVCK----GIFRNDNVADDDIVKLVDT 237
N TL L+R GR+++ P + R+ + K I ++ + + +VKL D
Sbjct: 280 ATNRPDTLDPALLRPGRLDRKIEIALPNEQARMDILKIHSSRITKHGEIDYEAVVKLSDG 339
Query: 238 FPGQSI 243
F G +
Sbjct: 340 FNGADL 345
>gi|154151138|ref|YP_001404756.1| ATPase AAA [Methanoregula boonei 6A8]
gi|153999690|gb|ABS56113.1| AAA family ATPase, CDC48 subfamily [Methanoregula boonei 6A8]
Length = 801
Score = 44.7 bits (104), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 41/172 (23%), Positives = 75/172 (43%), Gaps = 21/172 (12%)
Query: 43 VVHITKNFMSLPNI------KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELE 96
++ I + + P I K P + ++G G GK+ + + +K +N I + EL
Sbjct: 466 LIKIIEGRLRYPKIFEKLDYKPPRGILLFGPPGTGKTLLAKGIASKRQLNFISVKGPELL 525
Query: 97 SGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLM 156
S G+ K +R+ +R+A ++ C + +++DA + G T + V + +
Sbjct: 526 SKGVGDSEKHVREAFRKA----RQSAPCIIFFDEIDALFPKRGTVADNTHVTESVLSQFL 581
Query: 157 NIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAP 208
+L G+ EE V +I N L L+R GR+EK + P
Sbjct: 582 T--------ELDGI---EELKEVFVIGATNRPDLLDPALLRPGRLEKHLYIP 622
>gi|45184711|ref|NP_982429.1| AAL113Wp [Ashbya gossypii ATCC 10895]
gi|44980057|gb|AAS50253.1| AAL113Wp [Ashbya gossypii ATCC 10895]
gi|374105627|gb|AEY94538.1| FAAL113Wp [Ashbya gossypii FDAG1]
Length = 432
Score = 44.7 bits (104), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 39/148 (26%), Positives = 72/148 (48%), Gaps = 14/148 (9%)
Query: 56 IKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 115
I+ P + ++G G GK+ + V A +G N I A + GE A++IR+ + A
Sbjct: 207 IQSPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVDKYIGESARIIREMFAYA- 265
Query: 116 DIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEE 175
K+ + C + ++++DA GR ++ T ++ + TLM + Q+ G N
Sbjct: 266 ---KEHEPCIIFMDEVDAIGGRR--FSEGTSADREIQRTLMEL-----LTQMDGFDNL-- 313
Query: 176 NPRVPIIVTGNDFSTLYAPLIRDGRMEK 203
+ +I+ N TL L+R GR+++
Sbjct: 314 -GQTKVIMATNRPDTLDPALLRPGRLDR 340
>gi|399217606|emb|CCF74493.1| unnamed protein product [Babesia microti strain RI]
Length = 576
Score = 44.7 bits (104), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 48/195 (24%), Positives = 80/195 (41%), Gaps = 21/195 (10%)
Query: 57 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAD 116
++P + + G G GK+ V + GI I S E G+ A+ IR + A +
Sbjct: 174 RIPKGVLLVGPPGTGKTMLARAVATESGIQFIFTSGSEFVEIYVGQGARRIRNLFEHARN 233
Query: 117 IIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEEN 176
I C + I+++DA R T+ N + + TL N V+L G +
Sbjct: 234 I----SPCIIFIDEIDAVGARRVSTSNNPGNREH-DQTL-----NQLLVELDGF---SPS 280
Query: 177 PRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFR-------NDNVADD 229
+ +I N L + L+R GR ++ P DR G +F ++NV+
Sbjct: 281 SGITVIAATNRLDYLDSALLRPGRFDRIVHVPL-PDRNGREAILFMYLSKVVCDENVSVS 339
Query: 230 DIVKLVDTFPGQSID 244
D+ L F G ++
Sbjct: 340 DMASLTFGFSGADLE 354
>gi|389860481|ref|YP_006362720.1| AAA ATPase [Thermogladius cellulolyticus 1633]
gi|388525384|gb|AFK50582.1| AAA family ATPase, CDC48 subfamily [Thermogladius cellulolyticus
1633]
Length = 739
Score = 44.7 bits (104), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 43/186 (23%), Positives = 79/186 (42%), Gaps = 22/186 (11%)
Query: 64 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 123
++G G GK+ + V + G N I + E+ S GE K +R+ +R A +
Sbjct: 502 LYGPPGTGKTLLAKAVATESGANFIAIRGPEVLSKWVGESEKAVREVFRRARQVAP---- 557
Query: 124 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 183
C + +++D+ A G V +++VN L +L G+ +V +I
Sbjct: 558 CVVFFDEIDSIAPARGARYDSGVTDRIVNQLL---------TELDGIQPLR---KVVVIA 605
Query: 184 TGNDFSTLYAPLIRDGRMEKFYWAPTRE--DRIGVCKGIFRNDNVADD----DIVKLVDT 237
N L L+R GR ++ + P + R+ + K R +A D ++ +L +
Sbjct: 606 ATNRPDILDPALLRPGRFDRLVYVPPPDYKARLEIFKVHTRRVPLASDVNLEELARLTEG 665
Query: 238 FPGQSI 243
+ G I
Sbjct: 666 YTGADI 671
>gi|333910700|ref|YP_004484433.1| proteasome-activating nucleotidase [Methanotorris igneus Kol 5]
gi|333751289|gb|AEF96368.1| Proteasome-activating nucleotidase [Methanotorris igneus Kol 5]
Length = 407
Score = 44.7 bits (104), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 46/179 (25%), Positives = 76/179 (42%), Gaps = 16/179 (8%)
Query: 64 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 123
++G G GK+ + V A+ I + EL GE AKL+R ++ A K+
Sbjct: 187 LYGPPGTGKTLLAKAVAAETNATFIKIVGSELVKKFIGEGAKLVRDVFKLA----KEKAP 242
Query: 124 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 183
+ I+++DA A + T T ++ V TLM + L M + V +I
Sbjct: 243 SIIFIDEIDAVAAKR--TEALTGGDREVQRTLMQL--------LAEMDGFDARGDVKVIG 292
Query: 184 TGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCKGIFRNDNVADDDIVKLVDTFPG 240
N L ++R GR ++ AP E R+ + K R N+ D D+ ++ G
Sbjct: 293 ATNRLDILDPAILRPGRFDRIIEIPAPNEEGRLEILKIHTRKMNLRDVDLKRIAKMTEG 351
>gi|452821838|gb|EME28864.1| AAA-type ATPase [Galdieria sulphuraria]
Length = 406
Score = 44.7 bits (104), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 37/153 (24%), Positives = 74/153 (48%), Gaps = 14/153 (9%)
Query: 56 IKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 115
IK P + ++G G GK+ + + M + + + A + GE A++IR+ ++ A
Sbjct: 176 IKTPKGVLLYGPPGTGKTLLARAIASNMDCSFLKVVASAIVDKYIGESARIIREMFQYA- 234
Query: 116 DIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEE 175
K + C + ++++DA GR ++ T ++ + TLM + + QL G +E
Sbjct: 235 ---KAHEPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QLDGF---DE 281
Query: 176 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAP 208
+V +++ N L L+R GR+++ P
Sbjct: 282 IGKVKLVMATNRPDVLDPALLRPGRLDRKIEIP 314
>gi|443316084|ref|ZP_21045544.1| AAA+ family ATPase [Leptolyngbya sp. PCC 6406]
gi|442784315|gb|ELR94195.1| AAA+ family ATPase [Leptolyngbya sp. PCC 6406]
Length = 508
Score = 44.7 bits (104), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 54/230 (23%), Positives = 94/230 (40%), Gaps = 37/230 (16%)
Query: 25 LDNTIDGLYI-APAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKM 83
LDN D L AF DK + LP+ + L++GI +G GKS + +
Sbjct: 233 LDNLKDWLLRRGQAFSDKARQY------GLPHPRGLLLVGI---QGTGKSLTAKAIAHHW 283
Query: 84 GINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQ 143
+ + + G L +G GE R R+ I + C L I+++D + G
Sbjct: 284 HLPLLRLDVGRLFAGLVGESES----RTRQMIQISEALAPCILWIDEIDKAFAAVDGRGD 339
Query: 144 YTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEK 203
+N++ + +A E+ V ++ T N+ TL ++R GR ++
Sbjct: 340 GGTSNRVFGTFVTWLA--------------EKTSPVFVVATANNIQTLPPEMLRRGRFDE 385
Query: 204 FYWA--PTREDRIGVCK---GIFRNDNVADDDIVKLVDTFPGQSIDFFGA 248
++ P++E+R + R N+ D+ +L P DF GA
Sbjct: 386 IFFVGLPSQEERCAIFNVHLSRLRAHNLQSYDLPRLAYETP----DFSGA 431
>gi|89885742|ref|YP_515940.1| AAA ATPase, central region [Rhodoferax ferrireducens T118]
gi|89347740|gb|ABD71942.1| AAA ATPase, central region [Rhodoferax ferrireducens T118]
Length = 688
Score = 44.7 bits (104), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 48/222 (21%), Positives = 97/222 (43%), Gaps = 33/222 (14%)
Query: 66 GGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCC 125
G G GK+ EL+ ++G+ + + +L S E ++++ +R+AA + C
Sbjct: 238 GPSGNGKTTIAELIAGELGLPFVKLGCQDLTSKWVNESPAVLKELFRQAA-----LEPCV 292
Query: 126 LMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTG 185
+ ++ D A G + + ++V A L I DN R+ +I
Sbjct: 293 VFFDEFDGVAMSRGNGNMHDEDRKLVTALLSEI-DN------------ARKSRIVLIAAT 339
Query: 186 NDFSTLYAPLIRDG----RMEKFYWAPTREDRIGVCKGIFRNDNVADDD--IVKLVDTFP 239
N + + + RDG R+E Y P +E R + +G+ + NV ++ + + + +
Sbjct: 340 NFAEKIDSAIARDGRFDFRIEVPY--PDQEAREAILRGMLKKFNVTAEESTVHHVAELWV 397
Query: 240 GQSIDFFGALRARVYDDEVRKWISGVGVGSIGKSLVNSKEAA 281
+SI F + R+ D+ G G+ S ++ + K+A+
Sbjct: 398 RRSIAFIESTVKRLRDN-------GKGIKSTIATVEDFKQAS 432
>gi|424896405|ref|ZP_18319979.1| AAA+ family ATPase [Rhizobium leguminosarum bv. trifolii WSM2297]
gi|393180632|gb|EJC80671.1| AAA+ family ATPase [Rhizobium leguminosarum bv. trifolii WSM2297]
Length = 298
Score = 44.7 bits (104), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 72/172 (41%), Gaps = 24/172 (13%)
Query: 97 SGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLM 156
SG GE LI Q +++ + K K L+I++ D+ A + + VN +
Sbjct: 115 SGMVGEMGTLISQAFQQVIKAVGKNKRAILIIDEGDSLAANRSQEHSHHEDKVAVNTLIQ 174
Query: 157 NIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGV 216
+I D + N R+ +I+ N S L L R + + + PT E+R
Sbjct: 175 HIDDL-----------RRFNGRILVILCTNRLSVLDPALRRRAAVVRAFSRPTPEER--- 220
Query: 217 CKGIFRND----NVADDDIVKLVDTFPGQSID----FFGALRARVYDDEVRK 260
K +F +D N + DD+ KLV G D + +R R+Y + K
Sbjct: 221 -KALFSSDLAALNPSADDLAKLV-AITGPRADQPTWTYSDIRTRLYPQALAK 270
>gi|168049694|ref|XP_001777297.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162671399|gb|EDQ57952.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 411
Score = 44.7 bits (104), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 52/215 (24%), Positives = 92/215 (42%), Gaps = 25/215 (11%)
Query: 38 FMDKLVVHIT--KNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGEL 95
M+ +V+ +T + F SL ++ P + ++G G GK+ A+ + ++ +L
Sbjct: 170 LMEAIVLPMTHKERFESL-GVRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQL 228
Query: 96 ESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDA-GAGRMGGTTQYTVNNQMVNAT 154
G+ AKL+R ++ A K+ C + I+++DA G R Q
Sbjct: 229 VQMFIGDGAKLVRDAFQLA----KEKAPCIIFIDEVDAIGTKRFDSEVSGDREVQRTMLE 284
Query: 155 LMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKF--YWAPTRED 212
L+N QL G + E R+ +I N L L+R GR+++ + PT E
Sbjct: 285 LLN--------QLDGFSSDE---RIKVIAATNRADILDPALMRSGRLDRKIEFPHPTEEA 333
Query: 213 RIGVCKGIFRNDNVADD----DIVKLVDTFPGQSI 243
R + + R NV D ++ + D F G +
Sbjct: 334 RARILQIHSRKMNVRGDVNFEELARSTDDFNGAQL 368
>gi|149924897|ref|ZP_01913230.1| ATP-dependent metalloprotease, FtsH family protein [Plesiocystis
pacifica SIR-1]
gi|149814229|gb|EDM73839.1| ATP-dependent metalloprotease, FtsH family protein [Plesiocystis
pacifica SIR-1]
Length = 707
Score = 44.7 bits (104), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 41/164 (25%), Positives = 76/164 (46%), Gaps = 20/164 (12%)
Query: 58 VPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADI 117
+P + WG G GK+ + + + +G +++ EL+S GE + +R+ + +A
Sbjct: 293 IPRGMIFWGPPGTGKTLFAKAIASALGAAVQIVNGPELKSRWVGESEENLRRIFIQA--- 349
Query: 118 IKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENP 177
++ ++ ++LD+ A + G T V + MVN L ++ G N N
Sbjct: 350 -RQSAPSLIVFDELDSFAAQRGTYTGSGVEHSMVNQLL---------TEMDGFRN---NE 396
Query: 178 RVPIIVTGNDFSTLYAPLIRDGRMEKFYWA---PTREDRIGVCK 218
V ++ T N ++ + L+R GR E F+ P EDR + K
Sbjct: 397 LVFVVGTTNFVESIDSALLRPGRFE-FHLHIPYPGAEDREAILK 439
>gi|443922351|gb|ELU41808.1| AAA domain-containing protein [Rhizoctonia solani AG-1 IA]
Length = 410
Score = 44.7 bits (104), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 38/184 (20%), Positives = 76/184 (41%), Gaps = 12/184 (6%)
Query: 23 YNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAK 82
+ +T+ ++ A L H + L +K P + ++G G GK+ +
Sbjct: 230 WTSKSTVPSIWCATLDQLGLACHSRHVMVFLAGLKPPKGILLYGPPGTGKTHLARAIARS 289
Query: 83 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRM---G 139
+ + +S EL S GE +R + EA +K C ++++++DA + G
Sbjct: 290 TNASLVAVSGAELASAYHGETEARLRAVFAEA----RKQSPCIIVLDEVDAMCPQREEGG 345
Query: 140 GTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDG 199
G TV + ++ AD+ + + PR+ ++ T N + + L R G
Sbjct: 346 GVEARTVATLLTELDGIDTADHGG-----NAHEQRRQPRIVVVATTNRPNAIDPALRRPG 400
Query: 200 RMEK 203
R ++
Sbjct: 401 RFDR 404
>gi|357509249|ref|XP_003624913.1| Cell division control protein-like protein [Medicago truncatula]
gi|124361206|gb|ABN09178.1| AAA ATPase, central region [Medicago truncatula]
gi|355499928|gb|AES81131.1| Cell division control protein-like protein [Medicago truncatula]
Length = 560
Score = 44.7 bits (104), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 39/163 (23%), Positives = 69/163 (42%), Gaps = 13/163 (7%)
Query: 56 IKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 115
+K P L ++G G GK+ + + G N ++S + S AGE + +R+ + EA+
Sbjct: 51 LKFPRGLLLYGPPGTGKTSLVRAIVEECGANLTIISPNTVNSALAGESERNLREAFSEAS 110
Query: 116 DIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEE 175
GK + I+++D R + V TLM+ ++ T
Sbjct: 111 SHAALGKSSVIFIDEIDGLCPRRDSIRELDVRIASQLCTLMD-SNKAT----------SS 159
Query: 176 NPRVPIIVTGNDFSTLYAPLIRDGR--MEKFYWAPTREDRIGV 216
NP V ++ + N + L R GR +E P E+R+ +
Sbjct: 160 NPGVVVVASTNRVDAIDPALRRYGRFDIETEVTVPNEEERLQI 202
>gi|358335648|dbj|GAA54299.1| 26S proteasome regulatory subunit T4, partial [Clonorchis sinensis]
Length = 595
Score = 44.7 bits (104), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 44/186 (23%), Positives = 88/186 (47%), Gaps = 20/186 (10%)
Query: 64 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 123
++G G GK+ V +++ N + + + + GE A+LIR+ + A D +
Sbjct: 378 LYGPPGTGKTLLARAVASQLDANFLKVVSSSIVDKYIGESARLIREMFNYARD----HQP 433
Query: 124 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 183
C + ++++DA GR ++ T ++ + TLM + + Q+ G + +V +I+
Sbjct: 434 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGF---DALGQVKMIM 483
Query: 184 TGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCK----GIFRNDNVADDDIVKLVDT 237
N TL L+R GR+++ P + R+ + K I ++ + + +VKL D
Sbjct: 484 ATNRPDTLDPALLRPGRLDRKIEIPLPNEQARMDIMKIHSAPIAKHGEIDWEAVVKLSDG 543
Query: 238 FPGQSI 243
F G +
Sbjct: 544 FNGADL 549
>gi|71005554|ref|XP_757443.1| hypothetical protein UM01296.1 [Ustilago maydis 521]
gi|46096926|gb|EAK82159.1| hypothetical protein UM01296.1 [Ustilago maydis 521]
Length = 878
Score = 44.7 bits (104), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 50/188 (26%), Positives = 81/188 (43%), Gaps = 16/188 (8%)
Query: 56 IKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 115
+K P + + G G GK+ V ++G+ + +SA + SG +GE K IR + EAA
Sbjct: 182 VKPPRGVLLHGPPGCGKTMLAGAVAGELGVPFLSISAPSVVSGTSGESEKTIRDTFDEAA 241
Query: 116 DIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEE 175
I C L I+++DA + T Q + ++V L ++ D + K +
Sbjct: 242 SIAP----CILFIDEIDAITPKR-ETAQREMERRIVAQLLTSLDDL--------SWEKTD 288
Query: 176 NPRVPIIVTGNDFSTLYAPLIRDGRM--EKFYWAPTREDRIGVCKGIFRNDNVADD-DIV 232
V II N +L L R GR E P + R + + + + +A D D
Sbjct: 289 GKPVMIIGATNRPDSLDPALRRAGRFDHEIAMGVPDEDGREQILRVLAQKLRLAGDFDFR 348
Query: 233 KLVDTFPG 240
L + PG
Sbjct: 349 ALAKSTPG 356
Score = 38.9 bits (89), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 38/168 (22%), Positives = 71/168 (42%), Gaps = 19/168 (11%)
Query: 64 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 123
+WG G GK+ + V + N I + EL + GE K +RQ + A +
Sbjct: 599 LWGPPGCGKTLLAKAVANESRANFISVKGPELLNKYVGESEKAVRQVFARA----RTSSP 654
Query: 124 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 183
C + ++LDA R + + ++++VN L +L G+ E + +I
Sbjct: 655 CVIFFDELDALVPRRDDSLSES-SSRVVNTLL---------TELDGL---ESRVQTYVIA 701
Query: 184 TGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCKGIFRNDNVADD 229
N + + R GR++K + P ++R + K I ++D+
Sbjct: 702 ATNRPDMIDPAMCRPGRLDKLLYVDLPKPDERYEILKTITSKTPLSDE 749
>gi|389860886|ref|YP_006363126.1| AAA ATPase [Thermogladius cellulolyticus 1633]
gi|388525790|gb|AFK50988.1| AAA family ATPase, CDC48 subfamily [Thermogladius cellulolyticus
1633]
Length = 729
Score = 44.7 bits (104), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 50/190 (26%), Positives = 86/190 (45%), Gaps = 19/190 (10%)
Query: 56 IKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 115
IK P + ++G G GK+ + V + G N I + E+ S GE + IR+ +R+A
Sbjct: 485 IKPPKGILLYGPPGTGKTLLAKAVATESGANFIAIRGPEVLSKWVGESERAIREVFRKA- 543
Query: 116 DIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEE 175
+ + ++++DA A G V+ ++V+ + ++ G+ K E
Sbjct: 544 ---RLYAPAVIFMDEIDAIAPVRGFAYDSGVSERVVSQLI---------TEMDGI-EKLE 590
Query: 176 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRE--DRIGVCKGIFRNDNVADD-DIV 232
N V +I N L L+R GR +K + P + R+ + K RN +ADD D+
Sbjct: 591 N--VVVIAATNRPDILDPALLRPGRFDKLIYVPPPDPSSRLEIFKIHTRNMPLADDVDLY 648
Query: 233 KLVDTFPGQS 242
+L G S
Sbjct: 649 ELAKQTEGYS 658
>gi|15922918|ref|NP_378587.1| cell division control protein [Sulfolobus tokodaii str. 7]
gi|342306740|dbj|BAK54829.1| ATPase [Sulfolobus tokodaii str. 7]
Length = 700
Score = 44.7 bits (104), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 43/180 (23%), Positives = 81/180 (45%), Gaps = 18/180 (10%)
Query: 57 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAD 116
++P + ++G G GK+ V + G N I ++ EL S GE + IR+ +++A
Sbjct: 463 EIPSGILLYGPPGTGKTMLARAVAHESGANFIAINGPELMSMWVGETERAIREVFKKA-- 520
Query: 117 IIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEEN 176
++ + +++DA A G V +++V+ L ++ G+ + E
Sbjct: 521 --RQSSPTIIFFDEIDAIAVARGADPN-KVTDRIVSQLL---------TEMDGISKRRE- 567
Query: 177 PRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPT--REDRIGVCKGIFRNDNVADDDIVKL 234
+V II N + L+R GR+EK + P + RI + + N + DI +L
Sbjct: 568 -KVVIIAATNRPDIIDPALLRPGRLEKLIYVPPPDYQTRIALFSRLINNRPHEEIDIERL 626
>gi|390961725|ref|YP_006425559.1| cell division protein containing CDC48 domain 1 [Thermococcus sp.
CL1]
gi|390520033|gb|AFL95765.1| cell division protein containing CDC48 domain 1 [Thermococcus sp.
CL1]
Length = 795
Score = 44.7 bits (104), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 47/187 (25%), Positives = 83/187 (44%), Gaps = 23/187 (12%)
Query: 64 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 123
++G G GK+ + V + N I + E+ S GE K IR+ +R+A ++
Sbjct: 555 LYGPPGTGKTLLAKAVANESEANFIAIKGPEVLSKWVGESEKNIREIFRKA----RQAAP 610
Query: 124 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 183
+ I+++DA A R GT V ++++N L M +EN V +I
Sbjct: 611 TVIFIDEIDAIAPRR-GTDVNRVTDRLINQLLTE------------MDGIQENSGVVVIG 657
Query: 184 TGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCKGIFRNDNVADD----DIVKLVDT 237
N + L+R GR ++ AP + R+ + K RN +A+D ++ K +
Sbjct: 658 ATNRPDIIDPALLRPGRFDRLILVPAPDEKARLEIFKVHTRNVPLAEDVKLEELAKRTEG 717
Query: 238 FPGQSID 244
+ G I+
Sbjct: 718 YTGADIE 724
>gi|357167908|ref|XP_003581390.1| PREDICTED: cell division control protein 48 homolog B-like
[Brachypodium distachyon]
Length = 600
Score = 44.7 bits (104), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 46/205 (22%), Positives = 88/205 (42%), Gaps = 15/205 (7%)
Query: 23 YNLDNTIDGLYIAPAFMDKLVVH--ITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVF 80
+ + + G +A + +LVV+ I L +K P L ++G G GK+ + +
Sbjct: 56 WRAEEAVAGNRMALDALRELVVYPFIYARQSRLLGLKWPRGLLLYGPPGTGKTSLVQAMV 115
Query: 81 AKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGG 140
+ + M++ + +AGE K +R+ + EA +G+ + I++LDA R
Sbjct: 116 RECNAHLTMINPYSVHKAHAGEGEKFLREAFSEAYSQASQGRPAIIFIDELDAICPRRDN 175
Query: 141 TTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGR 200
+ +++V L + N V+L P V ++ + N + L R GR
Sbjct: 176 KREQ--ESRIVGQLLTLMDGNKKTVKL---------PHVVVVASTNRVDAIDPALRRPGR 224
Query: 201 M--EKFYWAPTREDRIGVCKGIFRN 223
E P+ E+R+ + K +N
Sbjct: 225 FDSEIEVTVPSLEERLQILKLYTKN 249
>gi|284046875|ref|YP_003397215.1| ATP-dependent metalloprotease FtsH [Conexibacter woesei DSM 14684]
gi|310943103|sp|D3EZK2.1|FTSH3_CONWI RecName: Full=ATP-dependent zinc metalloprotease FtsH 3
gi|283951096|gb|ADB53840.1| ATP-dependent metalloprotease FtsH [Conexibacter woesei DSM 14684]
Length = 749
Score = 44.7 bits (104), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 52/187 (27%), Positives = 76/187 (40%), Gaps = 15/187 (8%)
Query: 57 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAD 116
K+P + + G G GK+ V + G+ MSA E G A +R +R+A
Sbjct: 272 KIPKGVLLSGQPGTGKTLLARAVAGEAGVPFFSMSASEFVEMIVGVGASRVRDLFRQA-- 329
Query: 117 IIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEEN 176
K+ + I++LDA GG N TL I L M E
Sbjct: 330 --KEAAPAIIFIDELDAIGRARGGGRGSFGGNDEREQTLNQI--------LTEMDGFEPT 379
Query: 177 PRVPIIVTGNDFSTLYAPLIRDGRMEK--FYWAPTREDRIGVCKGIFRNDNVADD-DIVK 233
V +I N L A L+R GR ++ AP R R+ + K R+ +ADD D+
Sbjct: 380 TAVIVIAATNRPEILDAALLRPGRFDRRVTVAAPDRNGRLMILKVHTRSVPLADDVDLES 439
Query: 234 LVDTFPG 240
+ + PG
Sbjct: 440 IASSTPG 446
>gi|448667582|ref|ZP_21686082.1| proteasome-activating nucleotidase, partial [Haloarcula amylolytica
JCM 13557]
gi|445770150|gb|EMA21218.1| proteasome-activating nucleotidase, partial [Haloarcula amylolytica
JCM 13557]
Length = 217
Score = 44.7 bits (104), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 44/166 (26%), Positives = 72/166 (43%), Gaps = 16/166 (9%)
Query: 66 GGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCC 125
G G GK+ + V + I M+ EL GE AKL+R + ++ ++ +
Sbjct: 2 GPPGTGKTMLAKAVANETDATFIKMAGSELVHKFIGEGAKLVRDLF----ELARQEEPAV 57
Query: 126 LMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTG 185
+ I+++DA A + T T + V T+M + L M ++ + II
Sbjct: 58 VFIDEIDAIAAKR--TESKTSGDAEVQRTMMQL--------LSEMDGFDDRGDIRIIAAT 107
Query: 186 NDFSTLYAPLIRDGRMEKFYWAPT--REDRIGVCKGIFRNDNVADD 229
N F L ++R GR ++ P E R + K R+ NVADD
Sbjct: 108 NRFDMLDRAILRPGRFDRLIEVPNPDVEGREQIFKIHTRSMNVADD 153
>gi|254585551|ref|XP_002498343.1| ZYRO0G08008p [Zygosaccharomyces rouxii]
gi|238941237|emb|CAR29410.1| ZYRO0G08008p [Zygosaccharomyces rouxii]
Length = 826
Score = 44.7 bits (104), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 44/173 (25%), Positives = 75/173 (43%), Gaps = 23/173 (13%)
Query: 56 IKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 115
I P + +WG G GK+ + V + N I + EL + GE + IRQ + A
Sbjct: 547 ISAPAGVLLWGPPGCGKTLLAKAVANESRANFISIKGPELLNKYVGESERAIRQVFTRA- 605
Query: 116 DIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEE 175
+ C + ++LDA R T + ++++VN L +L G+
Sbjct: 606 ---RASVPCVIFFDELDALVPRRDSTLSES-SSRVVNTLL---------TELDGL----- 647
Query: 176 NPRVPIIVTG--NDFSTLYAPLIRDGRMEK--FYWAPTREDRIGVCKGIFRND 224
N R I V G N + ++R GR++K F P E+++ + K + R +
Sbjct: 648 NDRRGIFVVGATNRPDMIDPAMLRPGRLDKTLFIELPNAEEKLDILKTLVRTN 700
Score = 44.3 bits (103), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 52/214 (24%), Positives = 91/214 (42%), Gaps = 31/214 (14%)
Query: 64 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 123
+ G G GK+ + ++ + + +SA + SG +GE K IR + EA +
Sbjct: 231 LHGPPGCGKTSIANALAGELQVPFLSISAPSVVSGMSGESEKKIRDLFDEARSLAP---- 286
Query: 124 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 183
C + +++DA + G Q + ++V A L+ D N E+ P+IV
Sbjct: 287 CLMFFDEIDAITPKRDGGAQREMERRIV-AQLLTSMDE---------LNMEKTGGKPVIV 336
Query: 184 TG--NDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCKGIFRNDNV-ADDDIVKLVDTF 238
G N +L A L R GR ++ P R+ + K + +N + + D +KL
Sbjct: 337 IGATNRPDSLDAALRRAGRFDREICLNVPNELSRVHILKKLAQNLKIDGEIDFIKLAKLT 396
Query: 239 PGQSIDFFGALRARVYDDEVRKWISGVGVGSIGK 272
PG F GA +++ I+ G +I +
Sbjct: 397 PG----FVGA--------DLKALITAAGTCAIKR 418
>gi|448697529|ref|ZP_21698569.1| ATPase AAA [Halobiforma lacisalsi AJ5]
gi|445781482|gb|EMA32338.1| ATPase AAA [Halobiforma lacisalsi AJ5]
Length = 743
Score = 44.7 bits (104), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 40/142 (28%), Positives = 65/142 (45%), Gaps = 17/142 (11%)
Query: 64 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 123
++G G GK+ + V + N I + +L S GE K IRQ +R+A ++
Sbjct: 501 LYGPPGTGKTLMAKAVANETNANFISVRGPQLLSKWVGESEKAIRQTFRKA----RQVSP 556
Query: 124 CCLMINDLDAGA-GRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPII 182
+ ++LDA A GR GG T V+ ++VN L +L G+ E+ V +I
Sbjct: 557 TVIFFDELDALAPGRGGGETGSNVSERVVNQLL---------TELDGLEEMED---VMVI 604
Query: 183 VTGNDFSTLYAPLIRDGRMEKF 204
N + L+R GR ++
Sbjct: 605 GATNRPDMIDPALLRSGRFDRL 626
>gi|388501068|gb|AFK38600.1| unknown [Lotus japonicus]
Length = 400
Score = 44.7 bits (104), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 46/196 (23%), Positives = 93/196 (47%), Gaps = 24/196 (12%)
Query: 56 IKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 115
IK P + ++G G GK+ + + + N + + + + GE A+LIR+ + A
Sbjct: 171 IKPPRGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYAR 230
Query: 116 DIIKKGKMCCLMINDLDAGAGRMGGT--TQYTVNNQMVNATLMNIADNPTCVQLPGMYNK 173
D + C + ++++DA +GG ++ T ++ + TLM + + QL G
Sbjct: 231 D----HQPCIIFMDEIDA----IGGLRFSEGTSADREIQRTLMELLN-----QLDGF--- 274
Query: 174 EENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCK----GIFRNDNVA 227
++ +V +I+ N L L+R GR+++ P + R+ + K GI ++ +
Sbjct: 275 DQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEID 334
Query: 228 DDDIVKLVDTFPGQSI 243
+ +VKL + F G +
Sbjct: 335 YEAVVKLAEGFNGADL 350
>gi|16081896|ref|NP_394300.1| ATPase [Thermoplasma acidophilum DSM 1728]
gi|11387127|sp|O05209.1|VAT_THEAC RecName: Full=VCP-like ATPase
gi|1916752|gb|AAC45089.1| VCP-like ATPase [Thermoplasma acidophilum]
gi|10640117|emb|CAC11969.1| VAT ATPase (VCP-like ATPase) [Thermoplasma acidophilum]
Length = 745
Score = 44.7 bits (104), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 51/227 (22%), Positives = 97/227 (42%), Gaps = 34/227 (14%)
Query: 24 NLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKM 83
+ T++ + P +L + +K F+ ++G G GK+ + V +
Sbjct: 478 EIKETVELPLLKPDVFKRLGIRPSKGFL------------LYGPPGVGKTLLAKAVATES 525
Query: 84 GINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQ 143
N I + E+ S GE K IR+ +++A K+ + ++++D+ A R G T+
Sbjct: 526 NANFISIKGPEVLSKWVGESEKAIREIFKKA----KQVAPAIVFLDEIDSIAPRRGTTSD 581
Query: 144 YTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEK 203
V ++VN L + L G+ E V +I N + L+R GR +K
Sbjct: 582 SGVTERIVNQLLTS---------LDGI---EVMNGVVVIGATNRPDIMDPALLRAGRFDK 629
Query: 204 FYW--APTREDRIGVCKGIFRNDNVADD----DIVKLVDTFPGQSID 244
+ P +E R+ + K +N +A D DI + + + G ++
Sbjct: 630 LIYIPPPDKEARLSILKVHTKNMPLAPDVDLNDIAQRTEGYVGADLE 676
>gi|428320723|ref|YP_007118605.1| AAA ATPase central domain protein [Oscillatoria nigro-viridis PCC
7112]
gi|428244403|gb|AFZ10189.1| AAA ATPase central domain protein [Oscillatoria nigro-viridis PCC
7112]
Length = 545
Score = 44.7 bits (104), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 41/169 (24%), Positives = 76/169 (44%), Gaps = 23/169 (13%)
Query: 53 LPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYR 112
+PN K L++GI +G GKS + + + + + + G L G GE +RQ +
Sbjct: 282 IPNPKGVLLVGI---QGTGKSLSAKTIACEWRLPLLRLDTGRLFGGVVGESESRVRQMIQ 338
Query: 113 EAADIIKKGKMCCLMINDLDAGAGR-MGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMY 171
A I C L I+++D G + G+ + ++ V +L+ +
Sbjct: 339 LAEAIAP----CVLWIDEIDKAFGNIISGSDGDSGTSRRVFGSLIT-------------W 381
Query: 172 NKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCK 218
+E+ V I+ T N+ L A L+R GR ++ ++ P+ +R + K
Sbjct: 382 MQEKTSPVFIVATANNVRILPAELLRKGRFDEIFFLNLPSESERQDIFK 430
>gi|448515944|ref|XP_003867452.1| Rix7 protein [Candida orthopsilosis Co 90-125]
gi|380351791|emb|CCG22014.1| Rix7 protein [Candida orthopsilosis]
Length = 824
Score = 44.7 bits (104), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 48/214 (22%), Positives = 94/214 (43%), Gaps = 29/214 (13%)
Query: 64 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 123
++G G GK+ + ++ + I +SA + SG +GE K +R+ + EA +
Sbjct: 224 LYGPPGCGKTTIANALAGELKVPFINISAPSIVSGMSGESEKKLRELFEEAKSVAP---- 279
Query: 124 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 183
C + ++++DA + G Q + ++V A L+ + D T +K +N V +I
Sbjct: 280 CLIFMDEIDAITPKRDGGAQREMERRIV-AQLLTLMDELT-------LDKTDNKPVIVIG 331
Query: 184 TGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCKGIFRNDNVADD---DIVKLVDTF 238
N +L + L R GR ++ P R + + + +N + D D +L
Sbjct: 332 ATNRPDSLDSALRRAGRFDREICLNVPNEAQRESILRTMTKNIRLKDGEHFDYRELSKLT 391
Query: 239 PGQSIDFFGALRARVYDDEVRKWISGVGVGSIGK 272
PG + GA +++ ++ GV +I +
Sbjct: 392 PG----YVGA--------DLKSLVTAAGVAAIKR 413
Score = 40.8 bits (94), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 73/167 (43%), Gaps = 19/167 (11%)
Query: 56 IKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 115
I P + +WG G GK+ + V + N I + EL + GE K +RQ ++ A
Sbjct: 545 ISAPSGVLMWGPPGCGKTLLAKAVANESRANFISVKGPELLNKYVGESEKAVRQVFQRAM 604
Query: 116 DIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEE 175
K C + ++LDA R T+ ++++VN L +L G+ ++
Sbjct: 605 ----ASKPCIIFFDELDALVPRR-DTSMSESSSRVVNTLL---------TELDGLSDRN- 649
Query: 176 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCKGI 220
V +I N + ++R GR++K + PT +R + K I
Sbjct: 650 --GVFVIGATNRPDMIDPAMLRPGRLDKTLYIELPTANERYEILKTI 694
>gi|336368315|gb|EGN96658.1| hypothetical protein SERLA73DRAFT_75535 [Serpula lacrymans var.
lacrymans S7.3]
gi|336381126|gb|EGO22278.1| hypothetical protein SERLADRAFT_409838 [Serpula lacrymans var.
lacrymans S7.9]
Length = 399
Score = 44.7 bits (104), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 44/194 (22%), Positives = 86/194 (44%), Gaps = 20/194 (10%)
Query: 56 IKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 115
IK P + ++G G GK+ V A + N + + + + GE A+++R+ + A
Sbjct: 175 IKAPKGVLLYGPPGTGKTLLARAVAATLHTNFLKVVSSAIVDKYIGESARVVREMFGYAR 234
Query: 116 DIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEE 175
D + C + ++++DA GR ++ T ++ + TLM + + G
Sbjct: 235 D----HEPCVIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLNQMDGFDALG------ 282
Query: 176 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCK----GIFRNDNVADD 229
+ +I+ N TL L+R GR+++ P + R+ + K + + + +
Sbjct: 283 --KTKLIMATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLEILKIHAAPVNKGGEIDYE 340
Query: 230 DIVKLVDTFPGQSI 243
IVKL D F G +
Sbjct: 341 AIVKLSDAFNGADL 354
>gi|242620102|ref|YP_003002106.1| ATPase AAA family [Aureococcus anophagefferens]
gi|239997347|gb|ACS36870.1| ATPase AAA family [Aureococcus anophagefferens]
Length = 493
Score = 44.7 bits (104), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 46/196 (23%), Positives = 84/196 (42%), Gaps = 27/196 (13%)
Query: 58 VPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADI 117
VP L + G +G GKS + + + + + G+L +G GE +R+ R A +
Sbjct: 258 VPRGLLLVGVQGTGKSLTAKAIAHDWQLPLLRLDFGKLFAGIVGESESRVREMIRVAEAL 317
Query: 118 IKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENP 177
C L I+++D + N+++ AT + + E+
Sbjct: 318 AP----CVLWIDEIDKSFNQNDAKGDSGTTNRVL-ATFIT-------------WLSEKTS 359
Query: 178 RVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDR---IGVCKGIFRNDNVADDDIV 232
+V ++ T N+F L LIR GR ++ ++ P ++R V R +++ D +I
Sbjct: 360 QVFVVATANNFEVLPLELIRKGRFDEIFFVGLPIEDERKKIFTVLLSQIRPESINDFNIE 419
Query: 233 KLVDTFPGQSIDFFGA 248
+L +S DF GA
Sbjct: 420 QL----SKKSADFSGA 431
>gi|354610211|ref|ZP_09028167.1| 26S proteasome subunit P45 family [Halobacterium sp. DL1]
gi|353195031|gb|EHB60533.1| 26S proteasome subunit P45 family [Halobacterium sp. DL1]
Length = 411
Score = 44.7 bits (104), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 57/232 (24%), Positives = 93/232 (40%), Gaps = 39/232 (16%)
Query: 64 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 123
+ G G GK+ + V + I M+ EL GE ++L+R + E AD + +
Sbjct: 191 LHGPPGTGKTMLAKAVANQTDATFIKMAGSELVRKFIGEGSRLVRDLF-ELAD---QNEP 246
Query: 124 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 183
+ I+++DA A + T T + V T+M + L M +E V II
Sbjct: 247 AIIFIDEIDAVAAKR--TDSKTSGDAEVQRTMMQL--------LSEMDGFDERGDVRIIA 296
Query: 184 TGNDFSTLYAPLIRDGRMEKFYWAP-----TREDRIGVCKGIFRNDNVADD----DIVKL 234
N F L + ++R GR ++ P RE + + G NVA+D D+ +
Sbjct: 297 ATNRFDMLDSAILRPGRFDRLIEVPHPEVEARERILEIHAGEM---NVAEDVDFSDLAEQ 353
Query: 235 VDTFPGQSI-------------DFFGALRARVYDDEVRKWISGVGVGSIGKS 273
D F G + D +R +DD K ++ G +G S
Sbjct: 354 TDGFSGAQLASLTTEAGMFAIRDDRQEVRREDFDDAFAKLVNEGEDGDLGPS 405
>gi|195390540|ref|XP_002053926.1| GJ24151 [Drosophila virilis]
gi|194152012|gb|EDW67446.1| GJ24151 [Drosophila virilis]
Length = 399
Score = 44.7 bits (104), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 43/186 (23%), Positives = 87/186 (46%), Gaps = 20/186 (10%)
Query: 64 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 123
++G G GK+ + +++ N + + + + GE A+LIR+ + A D +
Sbjct: 182 LYGPPGTGKTLLARAIASQLDANFLKVVSSAIVDKYIGESARLIREMFSYARD----HQP 237
Query: 124 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 183
C + ++++DA GR ++ T ++ + TLM + + Q+ G + +V II+
Sbjct: 238 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGF---DALGQVKIIM 287
Query: 184 TGNDFSTLYAPLIRDGRMEKFYWAPTRED--RIGVCK----GIFRNDNVADDDIVKLVDT 237
N TL L+R GR+++ P + R+ + K + + + + +VKL D
Sbjct: 288 ATNRPDTLDPALLRPGRLDRKLEIPLPNEIARLDILKIHAAPLSKQGEIDYEAVVKLSDM 347
Query: 238 FPGQSI 243
F G +
Sbjct: 348 FNGADL 353
>gi|448720325|ref|ZP_21703305.1| proteasome-activating nucleotidase [Halobiforma nitratireducens JCM
10879]
gi|445782376|gb|EMA33222.1| proteasome-activating nucleotidase [Halobiforma nitratireducens JCM
10879]
Length = 410
Score = 44.7 bits (104), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 76/176 (43%), Gaps = 17/176 (9%)
Query: 64 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 123
++G G GK+ + V K I M+ EL GE ++L+R + ++ ++ +
Sbjct: 191 LYGPPGTGKTMLAKAVANKTDATFIKMAGSELVRKFIGEGSRLVRDLF----EMAREREP 246
Query: 124 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 183
+ I+++DA A + T + V T+M + L M E + II
Sbjct: 247 AIIFIDEIDAIA--TTRSESKTSGDAEVQRTMMQL--------LSEMDGFEPRGEIRIIA 296
Query: 184 TGNDFSTLYAPLIRDGRMEKFYWAPT--REDRIGVCKGIFRNDNVADD-DIVKLVD 236
N F L ++R GR ++ P R+ R + + R+ NV+DD D L D
Sbjct: 297 ATNRFDMLDRAILRPGRFDRLIEVPEPDRDGREQILEIHTRDMNVSDDVDFAALAD 352
>gi|389592578|ref|XP_003721730.1| putative 26S protease regulatory subunit [Leishmania major strain
Friedlin]
gi|321438263|emb|CBZ12016.1| putative 26S protease regulatory subunit [Leishmania major strain
Friedlin]
Length = 396
Score = 44.7 bits (104), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 43/187 (22%), Positives = 93/187 (49%), Gaps = 23/187 (12%)
Query: 64 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 123
++G G GK+ + + A + + + A + GE A++IR+ + A ++ +
Sbjct: 179 LYGPPGTGKTLLAKAIAANVDAAFLKIVASSIVDKYIGESARVIREMFAYA----REHEP 234
Query: 124 CCLMINDLDA-GAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPII 182
C + I+++DA G+ R+ G++ +++ + TLM + + Q+ G ++ +V +I
Sbjct: 235 CIIFIDEVDAIGSKRIEGSS----SDREIQRTLMELLN-----QMDGF---DKLGKVKVI 282
Query: 183 VTGNDFSTLYAPLIRDGRMEKFYWAPTRED--RIGVCK----GIFRNDNVADDDIVKLVD 236
+ N TL A L+R GR+++ P + R+ V + I + ++ + +VKL +
Sbjct: 283 MATNRPDTLDAALMRPGRLDRKIEIPLPNEAGRLDVLRIHSAKITKKGDIDFESVVKLSE 342
Query: 237 TFPGQSI 243
F G +
Sbjct: 343 GFNGADL 349
>gi|383625075|ref|ZP_09949481.1| ATPase AAA [Halobiforma lacisalsi AJ5]
Length = 743
Score = 44.7 bits (104), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 41/142 (28%), Positives = 64/142 (45%), Gaps = 17/142 (11%)
Query: 64 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 123
++G G GK+ + V + N I + +L S GE K IRQ +R+A +
Sbjct: 501 LYGPPGTGKTLMAKAVANETNANFISVRGPQLLSKWVGESEKAIRQTFRKARQV----SP 556
Query: 124 CCLMINDLDAGA-GRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPII 182
+ ++LDA A GR GG T V+ ++VN L +L G+ EE V +I
Sbjct: 557 TVIFFDELDALAPGRGGGETGSNVSERVVNQLL---------TELDGL---EEMEDVMVI 604
Query: 183 VTGNDFSTLYAPLIRDGRMEKF 204
N + L+R GR ++
Sbjct: 605 GATNRPDMIDPALLRSGRFDRL 626
>gi|384251719|gb|EIE25196.1| ATP-dependent metallopeptidase Hfl [Coccomyxa subellipsoidea C-169]
Length = 676
Score = 44.7 bits (104), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 57/208 (27%), Positives = 85/208 (40%), Gaps = 28/208 (13%)
Query: 43 VVHITKN---FMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGN 99
VVH ++ F SL K+P + + G G GK+ + + G+ S E E
Sbjct: 247 VVHYLRDPHKFTSLGG-KLPKGVLLVGPPGTGKTMLARAIAGEAGVPFFYCSGSEFEEMF 305
Query: 100 AGEPAKLIRQRYREAADIIKKGKMCCLMINDLDA-GAGRMGGTTQYTVNNQMVNATLMNI 158
G A+ +R+ + A KK C + I+++DA G R QY M +
Sbjct: 306 VGVGARRVRELFSAA----KKHSPCIVFIDEIDAIGGQRSAKDQQY-----------MKM 350
Query: 159 ADNPTCVQLPGMYNKEENPRVPIIVTGNDF-STLYAPLIRDGRMEKFYWAPT--REDRIG 215
N V+L G E I+V +F +L LIR GR ++ P E R
Sbjct: 351 TLNQLLVELDGFKPSEG----VIVVAATNFPESLDQALIRPGRFDRHVTVPNPDVEGRRQ 406
Query: 216 VCKGIFRNDNVADD-DIVKLVDTFPGQS 242
+ + FRN A D D+ + PG S
Sbjct: 407 ILESHFRNVPRATDVDLRVIARGTPGFS 434
>gi|428220693|ref|YP_007104863.1| AAA ATPase [Synechococcus sp. PCC 7502]
gi|427994033|gb|AFY72728.1| AAA+ family ATPase [Synechococcus sp. PCC 7502]
Length = 523
Score = 44.7 bits (104), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 40/169 (23%), Positives = 77/169 (45%), Gaps = 23/169 (13%)
Query: 53 LPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYR 112
+PN K L++GI +G GKS + + + + + + +G L G GE R R
Sbjct: 266 IPNPKGVLLVGI---QGTGKSLSAKTIAHEWRLPLLRLDSGRLFGGIVGES----ESRVR 318
Query: 113 EAADIIKKGKMCCLMINDLDAGAGRMG-GTTQYTVNNQMVNATLMNIADNPTCVQLPGMY 171
+ +++ C L I+++D G + + + ++ V A+L+ +
Sbjct: 319 QMIQLVEAIAPCVLWIDEIDKAFGNIHLNSDSDSGTSRRVFASLIT-------------W 365
Query: 172 NKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCK 218
+E+ V I+ T N+ L A L+R GR ++ ++ PT +R + K
Sbjct: 366 MQEKTTPVFIVATANNVQILPAELLRKGRFDEIFFVNLPTITERQEIFK 414
>gi|399578914|ref|ZP_10772658.1| ATPase AAA [Halogranum salarium B-1]
gi|399235940|gb|EJN56880.1| ATPase AAA [Halogranum salarium B-1]
Length = 270
Score = 44.7 bits (104), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 39/152 (25%), Positives = 68/152 (44%), Gaps = 21/152 (13%)
Query: 55 NIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREA 114
NI P + + G G GK+ + ++G + +SAG+++S E + + Q +REA
Sbjct: 66 NISPPNGILLHGPPGTGKTHFARAIAGELGHPYLELSAGDIKSRWINESTEKVNQLFREA 125
Query: 115 ADIIKKGKMCCLMINDLDA-GAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNK 173
A + C + I+++DA AGR + + + Q+VN L ++ D
Sbjct: 126 AQFDR----CVIFIDEIDALLAGR--DSDLHREHAQVVNEFLAHLDD------------- 166
Query: 174 EENPRVPIIVTGNDFSTLYAPLIRDGRMEKFY 205
E+P +I N L R GR ++ Y
Sbjct: 167 -EDPNFLVIAATNRVDLLDEAATRRGRFDQQY 197
>gi|254573476|ref|XP_002493847.1| Putative ATPase of the AAA family [Komagataella pastoris GS115]
gi|238033646|emb|CAY71668.1| Putative ATPase of the AAA family [Komagataella pastoris GS115]
gi|328354331|emb|CCA40728.1| Uncharacterized AAA domain-containing protein C16E9.10c
[Komagataella pastoris CBS 7435]
Length = 818
Score = 44.7 bits (104), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 45/171 (26%), Positives = 75/171 (43%), Gaps = 23/171 (13%)
Query: 56 IKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 115
I P + +WG G GK+ + V + N I + EL + GE K IRQ + A
Sbjct: 550 ITAPAGVLMWGPPGCGKTLLAKAVANESKANFISIKGPELLNKYVGESEKAIRQVFSRAR 609
Query: 116 DIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEE 175
I C + ++LDA R + + ++++VN L +L G+
Sbjct: 610 ASIP----CVIFFDELDALVPRRDASLSES-SSRVVNTLL---------TELDGL----- 650
Query: 176 NPRVPIIVTG--NDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCKGIFR 222
N R I V G N + ++R GR++K + PT ++R+ + K + R
Sbjct: 651 NDRKGIFVIGATNRPDMIDPAMLRPGRLDKTLYIELPTADERLEIMKTVIR 701
Score = 37.7 bits (86), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 47/214 (21%), Positives = 90/214 (42%), Gaps = 31/214 (14%)
Query: 64 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 123
+ G G GK+ + ++ + I +SA + SG +GE K IR + EA ++
Sbjct: 234 LHGPPGCGKTTIANALAGELQVPFISLSAPSVVSGMSGESEKKIRGIFEEAKELAP---- 289
Query: 124 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 183
C + +++DA + G Q + ++V A L+ D + + G P+I+
Sbjct: 290 CLIFFDEIDAITPKRDGGAQREMERRIV-AQLLTSMDELSLDKTDGK---------PVII 339
Query: 184 TG--NDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCKGIFRNDNVADD-DIVKLVDTF 238
G N +L L R GR ++ P R + + + + + D ++KL
Sbjct: 340 IGATNRPDSLDPALRRAGRFDREICINVPNELARYNIMESMMKTIKASGDLQLMKLAKMT 399
Query: 239 PGQSIDFFGALRARVYDDEVRKWISGVGVGSIGK 272
PG + GA +++ +S G+ +I +
Sbjct: 400 PG----YVGA--------DLKALVSAAGISAIKR 421
>gi|443475164|ref|ZP_21065122.1| AAA ATPase central domain protein [Pseudanabaena biceps PCC 7429]
gi|443020015|gb|ELS34024.1| AAA ATPase central domain protein [Pseudanabaena biceps PCC 7429]
Length = 549
Score = 44.3 bits (103), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 41/164 (25%), Positives = 73/164 (44%), Gaps = 24/164 (14%)
Query: 53 LPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIM-MSAGELESGNAGEPAKLIRQRY 111
LPN + L+LGI +G GKS C A + P++ + G L G+ R
Sbjct: 260 LPNPRGVLLLGI---QGTGKSL-CAKAIANLWRLPLLRLDVGRLFGSLVGQSES----RT 311
Query: 112 REAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMY 171
R+ + + C L I+++D G + + + +Q V TL+ +
Sbjct: 312 RQTIQLAEALAPCILWIDEIDKAFGGIANSVGDSGTSQRVLGTLLT-------------W 358
Query: 172 NKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDR 213
+E++ V ++ T N+ L L+R GR ++ ++ PT E+R
Sbjct: 359 MQEKSSPVFVVATANNIHALPPELLRKGRFDELFFINLPTYEER 402
>gi|334135697|ref|ZP_08509178.1| ATPase, AAA family [Paenibacillus sp. HGF7]
gi|333606759|gb|EGL18092.1| ATPase, AAA family [Paenibacillus sp. HGF7]
Length = 521
Score = 44.3 bits (103), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 46/155 (29%), Positives = 69/155 (44%), Gaps = 29/155 (18%)
Query: 110 RYREAADIIKKGKMCCLMINDLDAG-AGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLP 168
R +EA C L I++++ G AG +G + + +MV L
Sbjct: 312 RLKEALSTADHVSPCVLWIDEIEKGLAGAIGASNDGGTSTRMVGQFLF------------ 359
Query: 169 GMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW-----APTRED--RIGVCKGIF 221
+ +E RV ++ T ND S L L+R GR ++ ++ A RED +I + KG+
Sbjct: 360 --WLQESMARVFVVATANDVSKLPPELLRRGRFDELFFVDLPTAKEREDIIKIYIEKGL- 416
Query: 222 RNDNVADDDIVKLVDTFPGQSIDFFGA-LRARVYD 255
NV+ D + KLV G F GA L A V D
Sbjct: 417 -KTNVSPDLLEKLVHISEG----FAGADLEAAVRD 446
>gi|448431438|ref|ZP_21585105.1| ATPase AAA [Halorubrum tebenquichense DSM 14210]
gi|445687700|gb|ELZ39976.1| ATPase AAA [Halorubrum tebenquichense DSM 14210]
Length = 745
Score = 44.3 bits (103), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 51/192 (26%), Positives = 74/192 (38%), Gaps = 23/192 (11%)
Query: 64 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQ---RYREAADIIKK 120
+ G G GK+ + + G+N I ++ EL GE K +R+ R R+AA I
Sbjct: 525 LHGPPGTGKTMLARAIAGESGVNFIQVAGPELLDRYVGESEKAVRELFDRARQAAPAIVF 584
Query: 121 GKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVP 180
+ D DA G G + V+ + L +DNP V
Sbjct: 585 FDEIDAVATDRDAAGGDGSGVGERVVSQLLTE--LDRASDNPNLV--------------- 627
Query: 181 IIVTGNDFSTLYAPLIRDGRMEKFYWAPT--REDRIGVCKGIFRNDN-VADDDIVKLVDT 237
++ N + L L+R GR+E P RE R + R VAD D+ +L D
Sbjct: 628 VLAATNRRNALDRALLRPGRLETHVEVPEPDRESRRKILDVHTREKPVVADVDLDRLADE 687
Query: 238 FPGQSIDFFGAL 249
G S AL
Sbjct: 688 TEGYSGAEIAAL 699
>gi|281204261|gb|EFA78457.1| AAA ATPase domain-containing protein [Polysphondylium pallidum
PN500]
Length = 907
Score = 44.3 bits (103), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 36/167 (21%), Positives = 74/167 (44%), Gaps = 18/167 (10%)
Query: 56 IKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 115
I P + ++G G GK+ + + ++ N I + EL + GE + +RQ ++ A+
Sbjct: 617 IDSPAGVLMYGPPGCGKTLLAKAIASECQANFISVKGPELLNKYVGESERAVRQVFQRAS 676
Query: 116 DIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEE 175
C + ++ DA A + G ++VN L ++ G+ + E
Sbjct: 677 ----ASAPCVIFFDEFDALAPKRGTDGGNQATERVVNQLL---------TEMDGLEKRSE 723
Query: 176 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCKGI 220
V I+ N + + ++R GR++K + P+ E+R+ + K +
Sbjct: 724 ---VFIVAATNRPDIIDSAMLRPGRLDKLLYVPLPSPEERVEILKTV 767
>gi|448610410|ref|ZP_21661156.1| proteasome-activating nucleotidase [Haloferax mucosum ATCC
BAA-1512]
gi|445745034|gb|ELZ96504.1| proteasome-activating nucleotidase [Haloferax mucosum ATCC
BAA-1512]
Length = 412
Score = 44.3 bits (103), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 53/231 (22%), Positives = 95/231 (41%), Gaps = 20/231 (8%)
Query: 56 IKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 115
I P + ++G G GK+ + V + + I M+ EL GE A+L+R ++ AA
Sbjct: 183 IDPPAGVLLYGPPGTGKTMLAKAVANETNASFIKMAGSELVQKFIGEGARLVRDLFKLAA 242
Query: 116 DIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEE 175
+ + + I+++DA A + T T + V T+M + L M ++
Sbjct: 243 ----EREPVVIFIDEIDAVASKR--TDSKTSGDAEVQRTMMQL--------LSEMDGFDD 288
Query: 176 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCKGIFRNDNVAD----D 229
+ II N F L ++R GR ++ P E R + + NVAD D
Sbjct: 289 RGDIRIIAATNRFDMLDEAILRPGRFDRLIEVPKPAVEGRRRILDIHTSDMNVADDVDLD 348
Query: 230 DIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISGVGVGSIGKSLVNSKEA 280
+ + +D + G I + R ++G + + L N +E+
Sbjct: 349 ALAEELDDYSGADIASLTTEAGMFAIRDGRTEVTGADFDAAHEKLTNVEES 399
>gi|313238058|emb|CBY13177.1| unnamed protein product [Oikopleura dioica]
Length = 389
Score = 44.3 bits (103), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 44/186 (23%), Positives = 84/186 (45%), Gaps = 20/186 (10%)
Query: 64 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 123
++G G GK+ V +++ N + + + + GE A+LIR+ + A D +
Sbjct: 172 LYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIREMFNYARD----HQP 227
Query: 124 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 183
C + ++++DA GR ++ T ++ + TLM + + G +V +I+
Sbjct: 228 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLNQMDGFDALG--------QVKMIM 277
Query: 184 TGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCKGIFR----NDNVADDDIVKLVDT 237
N L L+R GR+++ P + R+ + K R + + + IVKL DT
Sbjct: 278 ATNRPDVLDPALLRPGRLDRKIEIPLPNEQARLDIMKIHSRPLATHGEIDYEAIVKLSDT 337
Query: 238 FPGQSI 243
F G +
Sbjct: 338 FNGADL 343
>gi|448490684|ref|ZP_21608142.1| ATPase AAA [Halorubrum californiensis DSM 19288]
gi|445693802|gb|ELZ45944.1| ATPase AAA [Halorubrum californiensis DSM 19288]
Length = 745
Score = 44.3 bits (103), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 46/185 (24%), Positives = 73/185 (39%), Gaps = 23/185 (12%)
Query: 64 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQ---RYREAADIIKK 120
++G G GK+ + + G+N I ++ EL GE K +R+ R R+AA I
Sbjct: 525 LYGPPGTGKTLLARAIAGESGVNYIQVAGPELLDRYVGESEKAVRELFDRARQAAPAIIF 584
Query: 121 GKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVP 180
+ D DA G G ++ V+ + L +DNP V
Sbjct: 585 FDEIDAVATDRDAAGGDGSGVSERVVSQLLTE--LDRASDNPNLV--------------- 627
Query: 181 IIVTGNDFSTLYAPLIRDGRMEKFYWAPT--REDRIGVCKGIFRNDNVADD-DIVKLVDT 237
++ N L L+R GR+E P RE R + + R + D D+ ++ D
Sbjct: 628 VLAATNRRDALDPALLRPGRLETHVEVPEPDREARRKILEVHTREKPLTDGVDLNRIADE 687
Query: 238 FPGQS 242
G S
Sbjct: 688 TEGYS 692
>gi|448315526|ref|ZP_21505174.1| proteasome-activating nucleotidase [Natronococcus jeotgali DSM
18795]
gi|445611699|gb|ELY65446.1| proteasome-activating nucleotidase [Natronococcus jeotgali DSM
18795]
Length = 409
Score = 44.3 bits (103), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 47/182 (25%), Positives = 75/182 (41%), Gaps = 17/182 (9%)
Query: 64 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 123
+ G G GK+ + V + I M+ EL GE ++L+R + ++ ++ +
Sbjct: 190 LHGPPGTGKTMLAKAVAHETDATFIKMAGSELVRKFIGEGSRLVRDLF----EMAREREP 245
Query: 124 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 183
+ I+++DA A T T + V T+M + L M E + II
Sbjct: 246 AIIFIDEIDAVA--TTRTESKTSGDAEVQRTMMQL--------LSEMDGFEARGEIRIIA 295
Query: 184 TGNDFSTLYAPLIRDGRMEKFYWAPT--REDRIGVCKGIFRNDNVADD-DIVKLVDTFPG 240
N F L ++R GR ++ P RE R + R NVADD + L D G
Sbjct: 296 ATNRFDMLDRAILRPGRFDRLIEVPEPDREGREQILSIHTRGMNVADDVEFAALADDTEG 355
Query: 241 QS 242
S
Sbjct: 356 YS 357
>gi|449066850|ref|YP_007433932.1| ATP-dependent Zn protease [Sulfolobus acidocaldarius N8]
gi|449069122|ref|YP_007436203.1| ATP-dependent Zn protease [Sulfolobus acidocaldarius Ron12/I]
gi|449035358|gb|AGE70784.1| ATP-dependent Zn protease [Sulfolobus acidocaldarius N8]
gi|449037630|gb|AGE73055.1| ATP-dependent Zn protease [Sulfolobus acidocaldarius Ron12/I]
Length = 773
Score = 44.3 bits (103), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 48/187 (25%), Positives = 83/187 (44%), Gaps = 22/187 (11%)
Query: 64 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 123
++G G GK+ + V + G N I + E+ S GE K IR+ +R+A ++
Sbjct: 519 LFGPPGTGKTMLAKAVATESGANFIAVRGPEILSKWVGESEKAIREIFRKA----RQAAP 574
Query: 124 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 183
+ +++D+ A G +T V ++VN L A+ V L NK V II
Sbjct: 575 TVIFFDEIDSIAPIRGLSTDSGVTERIVNQLL---AEMDGIVPL----NK-----VVIIA 622
Query: 184 TGNDFSTLYAPLIRDGRMEKFYWAPT--REDRIGVCKGIFRNDNVADD----DIVKLVDT 237
N L L+R GR ++ + P + R + K +N +A+D DI + +
Sbjct: 623 ATNRPDILDPALLRPGRFDRLIYVPPPDKTARFEILKVHTKNVPLAEDVSLEDIAEKAEG 682
Query: 238 FPGQSID 244
+ G ++
Sbjct: 683 YTGADLE 689
>gi|429193621|ref|YP_007179299.1| AAA ATPase [Natronobacterium gregoryi SP2]
gi|448326640|ref|ZP_21515988.1| ATPase AAA [Natronobacterium gregoryi SP2]
gi|429137839|gb|AFZ74850.1| AAA family ATPase, CDC48 subfamily [Natronobacterium gregoryi SP2]
gi|445610829|gb|ELY64597.1| ATPase AAA [Natronobacterium gregoryi SP2]
Length = 743
Score = 44.3 bits (103), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 41/142 (28%), Positives = 64/142 (45%), Gaps = 17/142 (11%)
Query: 64 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 123
++G G GK+ + V + N I + +L S GE K IRQ +R+A +
Sbjct: 501 LYGPPGTGKTLMAKAVANETNANFISVRGPQLLSKWVGESEKAIRQTFRKARQV----SP 556
Query: 124 CCLMINDLDAGA-GRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPII 182
+ ++LDA A GR GG T V+ ++VN L +L G+ EE V +I
Sbjct: 557 TVIFFDELDALAPGRGGGETGSNVSERVVNQLL---------TELDGL---EEMEDVMVI 604
Query: 183 VTGNDFSTLYAPLIRDGRMEKF 204
N + L+R GR ++
Sbjct: 605 GATNRPDMIDPALLRSGRFDRL 626
>gi|240103746|ref|YP_002960055.1| AAA family ATPase [Thermococcus gammatolerans EJ3]
gi|239911300|gb|ACS34191.1| AAA family ATPase, CDC48 subfamily (Cdc48) [Thermococcus
gammatolerans EJ3]
Length = 796
Score = 44.3 bits (103), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 52/201 (25%), Positives = 88/201 (43%), Gaps = 24/201 (11%)
Query: 50 FMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQ 109
FM L I P + ++G G GK+ + V + N I + E+ S GE K IR+
Sbjct: 543 FMGL-GITPPKGILLYGPPGTGKTLLAKAVANESEANFIAIKGPEVLSKWVGESEKNIRE 601
Query: 110 RYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPG 169
+R+A ++ + I+++DA A R GT V ++++N L
Sbjct: 602 IFRKA----RQAAPTVIFIDEIDAIAPRR-GTDVNRVTDRLINQLLTE------------ 644
Query: 170 MYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCKGIFRNDNVA 227
M +EN V +I N L L+R GR ++ AP + R+ + K R +A
Sbjct: 645 MDGIQENSGVVVIGATNRPDILDPALLRPGRFDRLILVPAPDEKARLEIFKVHTRKVPLA 704
Query: 228 DD----DIVKLVDTFPGQSID 244
+D ++ K + + G I+
Sbjct: 705 EDVNLEELAKRTEGYTGADIE 725
>gi|345571053|gb|EGX53868.1| hypothetical protein AOL_s00004g527 [Arthrobotrys oligospora ATCC
24927]
Length = 816
Score = 44.3 bits (103), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 46/169 (27%), Positives = 73/169 (43%), Gaps = 20/169 (11%)
Query: 65 WGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMC 124
+G G GK+ + V + N I + EL S GE IR + +A + C
Sbjct: 533 YGPPGTGKTMLAKAVANECAANFISVKGPELLSMWFGESESNIRDIFDKA----RAAAPC 588
Query: 125 CLMINDLDAGAGRMGGTTQYT--VNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPII 182
+ +++LD+ A GG+ ++++VN L +L GM K+ V +I
Sbjct: 589 VVFLDELDSIAKSRGGSVGDAGGASDRVVNMLL---------TELDGMGVKKN---VFVI 636
Query: 183 VTGNDFSTLYAPLIRDGRMEKFYWAPT--REDRIGVCKGIFRNDNVADD 229
N L A L R GR++ + P E R+ + K RN +ADD
Sbjct: 637 GATNRPEQLDAALCRPGRLDTLVYVPLPDLESRLSILKAQLRNTPIADD 685
>gi|70606628|ref|YP_255498.1| ATP-dependent Zn protease [Sulfolobus acidocaldarius DSM 639]
gi|68567276|gb|AAY80205.1| ATP-dependent Zn protease [Sulfolobus acidocaldarius DSM 639]
Length = 747
Score = 44.3 bits (103), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 48/187 (25%), Positives = 83/187 (44%), Gaps = 22/187 (11%)
Query: 64 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 123
++G G GK+ + V + G N I + E+ S GE K IR+ +R+A ++
Sbjct: 493 LFGPPGTGKTMLAKAVATESGANFIAVRGPEILSKWVGESEKAIREIFRKA----RQAAP 548
Query: 124 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 183
+ +++D+ A G +T V ++VN L A+ V L NK V II
Sbjct: 549 TVIFFDEIDSIAPIRGLSTDSGVTERIVNQLL---AEMDGIVPL----NK-----VVIIA 596
Query: 184 TGNDFSTLYAPLIRDGRMEKFYWAPT--REDRIGVCKGIFRNDNVADD----DIVKLVDT 237
N L L+R GR ++ + P + R + K +N +A+D DI + +
Sbjct: 597 ATNRPDILDPALLRPGRFDRLIYVPPPDKTARFEILKVHTKNVPLAEDVSLEDIAEKAEG 656
Query: 238 FPGQSID 244
+ G ++
Sbjct: 657 YTGADLE 663
>gi|331242462|ref|XP_003333877.1| adenosinetriphosphatase [Puccinia graminis f. sp. tritici CRL
75-36-700-3]
gi|309312867|gb|EFP89458.1| adenosinetriphosphatase [Puccinia graminis f. sp. tritici CRL
75-36-700-3]
Length = 795
Score = 44.3 bits (103), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 48/183 (26%), Positives = 79/183 (43%), Gaps = 26/183 (14%)
Query: 64 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 123
+WG G GK+ + V + N I + EL + GE K +RQ + A +
Sbjct: 517 LWGPPGCGKTLVAKAVANESQANFISVKGPELLNKYVGESEKAVRQVFIRA----RASAP 572
Query: 124 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 183
C + ++LDA R + + ++++VN L +L G+ PR I V
Sbjct: 573 CIIFFDELDALVPRRDDSLSES-SSRVVNTLL---------TELDGL-----EPRKQIYV 617
Query: 184 TG--NDFSTLYAPLIRDGRMEK--FYWAPTREDRIGVCKGIFRN---DNVADDDIVKLVD 236
G N + ++R GR++K F P R+DR + K + D+ A + I KL+
Sbjct: 618 IGATNRPDVMDPAMVRPGRLDKMIFIDLPDRQDRWEIFKTLSSKLTFDSPASEAIQKLIQ 677
Query: 237 TFP 239
P
Sbjct: 678 DDP 680
Score = 38.5 bits (88), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 47/181 (25%), Positives = 77/181 (42%), Gaps = 27/181 (14%)
Query: 62 LGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKG 121
L + G G GK+ + ++G+ I +S+ + SG +GE K IR + +A K
Sbjct: 178 LLLCGPPGCGKTMLANAIANQLGVRLINVSSTSIVSGMSGESEKAIRDIFEQAT----KQ 233
Query: 122 KMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPI 181
C L I+++DA + T Q + ++V A L+ D+ + + G P+
Sbjct: 234 APCLLFIDEIDAITPKR-ETAQREMERRIV-AQLLTCLDDLSLEKTDGK---------PV 282
Query: 182 IVTG--NDFSTLYAPLIRDGRM--EKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDT 237
IV G N +L L R GR E P R + + + +KLVD+
Sbjct: 283 IVIGATNRPDSLDPALRRGGRFDHEILMGVPDEAAREQILRVLCSK--------LKLVDS 334
Query: 238 F 238
F
Sbjct: 335 F 335
>gi|290987216|ref|XP_002676319.1| proteasome subunit [Naegleria gruberi]
gi|284089920|gb|EFC43575.1| proteasome subunit [Naegleria gruberi]
Length = 394
Score = 44.3 bits (103), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 47/194 (24%), Positives = 91/194 (46%), Gaps = 20/194 (10%)
Query: 56 IKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 115
IK P + ++G G GK+ + + + N + + A + GE A++IR+ + A
Sbjct: 169 IKAPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVASAIVDKYIGESARIIREMFGYAR 228
Query: 116 DIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEE 175
D + C + ++++DA G+ ++ T ++ + TLM + + QL G +N +
Sbjct: 229 D----HQPCIIFMDEIDAIGGKR--FSEGTSADREIQRTLMELLN-----QLDG-FN--D 274
Query: 176 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCK----GIFRNDNVADD 229
+V I+ N L L+R GR+++ P + R+ + K I ++ + +
Sbjct: 275 VGQVKFIMATNRPDVLDTALMRPGRLDRKIEISLPNEQGRLSILKIHSRSITKHGEIDYE 334
Query: 230 DIVKLVDTFPGQSI 243
IVKL D F G +
Sbjct: 335 AIVKLSDGFNGADL 348
>gi|354543412|emb|CCE40131.1| hypothetical protein CPAR2_101690 [Candida parapsilosis]
Length = 824
Score = 44.3 bits (103), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 39/167 (23%), Positives = 76/167 (45%), Gaps = 14/167 (8%)
Query: 64 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 123
++G G GK+ + ++ + I +SA + SG +GE K +R+ + EA +
Sbjct: 224 LYGPPGCGKTTIANALAGELKVPFINISAPSIVSGMSGESEKKLRELFEEAKSVAP---- 279
Query: 124 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 183
C + ++++DA + G Q + ++V A L+ + D T +K +N V +I
Sbjct: 280 CLIFMDEIDAITPKRDGGAQREMERRIV-AQLLTLMDELTL-------DKTDNKPVIVIG 331
Query: 184 TGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCKGIFRNDNVAD 228
N +L + L R GR ++ P R + + + +N + D
Sbjct: 332 ATNRPDSLDSALRRAGRFDREICLNVPNETQRESILRAMTKNIRLKD 378
Score = 39.3 bits (90), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 40/167 (23%), Positives = 73/167 (43%), Gaps = 19/167 (11%)
Query: 56 IKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 115
I P + +WG G GK+ + V + N I + EL + GE K +RQ ++ A
Sbjct: 545 ISAPSGVLMWGPPGCGKTLLAKAVANESRANFISVKGPELLNKYVGESEKAVRQVFQRAM 604
Query: 116 DIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEE 175
K C + ++LDA R + + ++++VN L +L G+ ++
Sbjct: 605 ----ASKPCIIFFDELDALVPRRDASMSES-SSRVVNTLL---------TELDGLSDRN- 649
Query: 176 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCKGI 220
V +I N + ++R GR++K + P+ +R + K I
Sbjct: 650 --GVFVIGATNRPDMIDPAMLRPGRLDKTLYIELPSATERFEILKTI 694
>gi|341038686|gb|EGS23678.1| 26S protease subunit RPT4 (26S protease subunit SUG2)-like protein
[Chaetomium thermophilum var. thermophilum DSM 1495]
Length = 391
Score = 44.3 bits (103), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 47/194 (24%), Positives = 90/194 (46%), Gaps = 20/194 (10%)
Query: 56 IKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 115
IK P + ++G G GK+ V + + N + + + + GE A+LIR+ + A
Sbjct: 166 IKPPKGVLLYGPPGTGKTLLARAVASSLETNFLKVVSSAIVDKYIGESARLIREMFGYA- 224
Query: 116 DIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEE 175
K+ + C + ++++DA GR ++ T ++ + TLM + + QL G +
Sbjct: 225 ---KEHEPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QLDGF---DY 271
Query: 176 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRED--RIGVCK----GIFRNDNVADD 229
+ II+ N TL L+R GR+++ P + R+ + K + + + +
Sbjct: 272 LGKTKIIMATNRPDTLDPALLRAGRLDRKIEIPLPNEVGRLEILKIHSASVAKEGEIDFE 331
Query: 230 DIVKLVDTFPGQSI 243
IVK+ D F G +
Sbjct: 332 SIVKMSDGFNGADL 345
>gi|124810171|ref|XP_001348790.1| ATP-dependent protease la, putative [Plasmodium falciparum 3D7]
gi|23497690|gb|AAN37229.1| ATP-dependent protease la, putative [Plasmodium falciparum 3D7]
Length = 706
Score = 44.3 bits (103), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 40/152 (26%), Positives = 68/152 (44%), Gaps = 17/152 (11%)
Query: 57 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAD 116
K+P + + G G GK+ + + + + S E E G A+ IR+ ++ A
Sbjct: 285 KLPKGILLSGEPGTGKTLIARAIAGEANVPFLQASGSEFEEMFVGVGARRIRELFQAA-- 342
Query: 117 IIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEEN 176
KK C + I+++DA G+ + + +N V TL N V+L G E+N
Sbjct: 343 --KKHAPCIVFIDEIDA-----VGSKRSSRDNSAVRMTL-----NQLLVELDGF---EQN 387
Query: 177 PRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAP 208
+ +I N +L L+R GR++K P
Sbjct: 388 EGIVVICATNFPQSLDKALVRPGRLDKTIVVP 419
>gi|401826861|ref|XP_003887523.1| ATP-dependent 26S proteasome regulatory subunit [Encephalitozoon
hellem ATCC 50504]
gi|392998529|gb|AFM98542.1| ATP-dependent 26S proteasome regulatory subunit [Encephalitozoon
hellem ATCC 50504]
Length = 391
Score = 44.3 bits (103), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 47/194 (24%), Positives = 93/194 (47%), Gaps = 20/194 (10%)
Query: 56 IKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 115
++ P + ++G G GK+ +V A M +N + + + L GE +++IR+ + A
Sbjct: 166 VRAPKGVLLYGPPGTGKTLLARIVAATMDVNFLKVVSSALIEKYIGESSRMIREMFAYA- 224
Query: 116 DIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEE 175
++ C + ++++DA G+ + + + +++ V TLM + + QL G +N+ +
Sbjct: 225 ---RRKAPCIIFMDEIDAIGGKR--SRESSSSDREVQRTLMELLN-----QLDG-FNELD 273
Query: 176 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCKGIFRNDNVAD----D 229
N V +I+ N L L+R GR+++ P + R + K R N + D
Sbjct: 274 N--VKVIMATNRPDILDPALLRPGRLDRKIEIPLPNEQGRKEILKIHSRPMNAIEEIDYD 331
Query: 230 DIVKLVDTFPGQSI 243
+VKL F G +
Sbjct: 332 SLVKLTAGFNGADL 345
>gi|310600|gb|AAA72002.1| ATPase [Sulfolobus acidocaldarius]
Length = 780
Score = 44.3 bits (103), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 48/187 (25%), Positives = 83/187 (44%), Gaps = 22/187 (11%)
Query: 64 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 123
++G G GK+ + V + G N I + E+ S GE K IR+ +R+A ++
Sbjct: 526 LFGPPGTGKTMLAKAVATESGANFIAVRGPEILSKWVGESEKAIREIFRKA----RQAAP 581
Query: 124 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 183
+ +++D+ A G +T V ++VN L A+ V L NK V II
Sbjct: 582 TVIFFDEIDSIAPIRGLSTDSGVTERIVNQLL---AEMDGIVPL----NK-----VVIIA 629
Query: 184 TGNDFSTLYAPLIRDGRMEKFYWAPT--REDRIGVCKGIFRNDNVADD----DIVKLVDT 237
N L L+R GR ++ + P + R + K +N +A+D DI + +
Sbjct: 630 ATNRPDILDPALLRPGRFDRLIYVPPPDKTARFEILKVHTKNVPLAEDVSLEDIAEKAEG 689
Query: 238 FPGQSID 244
+ G ++
Sbjct: 690 YTGADLE 696
>gi|383864588|ref|XP_003707760.1| PREDICTED: peroxisome biogenesis factor 1-like [Megachile
rotundata]
Length = 1019
Score = 44.3 bits (103), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 40/162 (24%), Positives = 73/162 (45%), Gaps = 23/162 (14%)
Query: 64 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 123
++G G GK+ + + + G+N I + EL S G + +R + A + K
Sbjct: 769 LYGMPGTGKTMLAKAIANECGVNLISVKGPELLSKYIGASEESVRNMFERAL----RAKP 824
Query: 124 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 183
C L ++ D+ A R G + V +++VN L Q+ G+ ++E V ++
Sbjct: 825 CVLFFDEFDSLAPRRGHDST-GVTDRVVNQLL---------TQMDGVEDRE---GVAVVA 871
Query: 184 TGNDFSTLYAPLIRDGRMEKFYWAPT-----REDRIGV-CKG 219
+ L + L+R GR++K + P RE+ + V CK
Sbjct: 872 ASSRPDLLDSALLRPGRLDKALYCPLPDEADREEILAVLCKA 913
>gi|407921499|gb|EKG14641.1| ATPase AAA+ type core [Macrophomina phaseolina MS6]
Length = 394
Score = 44.3 bits (103), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 48/194 (24%), Positives = 89/194 (45%), Gaps = 20/194 (10%)
Query: 56 IKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 115
IK P + ++G G GK+ V + + N + + + + GE A+LIR+ + A
Sbjct: 169 IKPPKGVLLYGPPGTGKTLLARAVASSLETNFLKVVSSAIVDKYIGESARLIREMFGYA- 227
Query: 116 DIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEE 175
K+ + C + ++++DA GR ++ T ++ + TLM + + QL G +
Sbjct: 228 ---KEHEPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QLDGF---DY 274
Query: 176 NPRVPIIVTGNDFSTLYAPLIRDGRMEKF--YWAPTREDRIGVCK----GIFRNDNVADD 229
+ II+ N TL L+R GR+++ P R+ + K G+ + +
Sbjct: 275 LGKTKIIMATNRPDTLDPALLRAGRLDRKIEIALPNEVGRLEILKIHAGGVQTEGEIDFE 334
Query: 230 DIVKLVDTFPGQSI 243
IVK+ D F G +
Sbjct: 335 SIVKMSDGFNGADL 348
>gi|332158080|ref|YP_004423359.1| cell division protein CDC48 [Pyrococcus sp. NA2]
gi|331033543|gb|AEC51355.1| cell division protein CDC48 [Pyrococcus sp. NA2]
Length = 795
Score = 44.3 bits (103), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 66/150 (44%), Gaps = 17/150 (11%)
Query: 64 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 123
++G G GK+ + V + N I + E+ S GE K IR+ +R+A ++
Sbjct: 555 LYGPPGTGKTLLAKAVATESEANFIAVRGPEILSKWVGESEKNIREIFRKA----RQAAP 610
Query: 124 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 183
+ I+++DA A R GT V ++++N L M +EN V +I
Sbjct: 611 TVIFIDEIDAIAPRR-GTDVNRVTDRIINQLLTE------------MDGIQENTGVVVIA 657
Query: 184 TGNDFSTLYAPLIRDGRMEKFYWAPTREDR 213
N L L+R GR ++ P ++R
Sbjct: 658 ATNRPDILDPALLRPGRFDRLILVPAPDER 687
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.318 0.136 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,186,077,728
Number of Sequences: 23463169
Number of extensions: 271536087
Number of successful extensions: 597059
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 324
Number of HSP's successfully gapped in prelim test: 3238
Number of HSP's that attempted gapping in prelim test: 594995
Number of HSP's gapped (non-prelim): 4051
length of query: 375
length of database: 8,064,228,071
effective HSP length: 144
effective length of query: 231
effective length of database: 8,980,499,031
effective search space: 2074495276161
effective search space used: 2074495276161
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 78 (34.7 bits)