BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 017204
(375 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q7X9A0|RCA1_LARTR Ribulose bisphosphate carboxylase/oxygenase activase 1,
chloroplastic OS=Larrea tridentata GN=RCA1 PE=1 SV=1
Length = 476
Score = 700 bits (1807), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 335/377 (88%), Positives = 352/377 (93%), Gaps = 2/377 (0%)
Query: 1 MGTGTHYAVMSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPL 60
M +GTHYAVMSSYDYISQGLR YNLDN +DG YIAPAFMDKLVVHITKNF+SLPNIK+PL
Sbjct: 100 MQSGTHYAVMSSYDYISQGLRQYNLDNNMDGFYIAPAFMDKLVVHITKNFLSLPNIKIPL 159
Query: 61 ILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKK 120
ILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKK
Sbjct: 160 ILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKK 219
Query: 121 GKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVP 180
GKMCCL INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPT VQLPGMYNKEENPRVP
Sbjct: 220 GKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRVP 279
Query: 181 IIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPG 240
IIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFR DNVADDDIVKLVDTFPG
Sbjct: 280 IIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRTDNVADDDIVKLVDTFPG 339
Query: 241 QSIDFFGALRARVYDDEVRKWISGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNM 300
QSIDFFGALRARVY DEVRKW+S VGV +IGK LVNSKE P+FEQP+MT++KLL YG M
Sbjct: 340 QSIDFFGALRARVYHDEVRKWVSEVGVDTIGKKLVNSKEGPPSFEQPKMTIDKLLGYGGM 399
Query: 301 IVQEQENVKRVQLADKYLSEAALGEANEDAIQSGNFY-GKAAQQM-NVPVPEGCTDPTAE 358
+VQEQENVKRVQLADKY+SEAALG+AN DAI+ G FY G+AAQQ+ NVPVPEGCTDP A
Sbjct: 400 LVQEQENVKRVQLADKYMSEAALGDANNDAIKRGTFYGGQAAQQVGNVPVPEGCTDPQAT 459
Query: 359 NFDPTARSDDGSCQYTL 375
N+DPTARSDDGSC Y
Sbjct: 460 NYDPTARSDDGSCVYKF 476
>sp|P93431|RCA_ORYSJ Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic
OS=Oryza sativa subsp. japonica GN=RCA PE=1 SV=2
Length = 466
Score = 683 bits (1763), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 320/375 (85%), Positives = 351/375 (93%), Gaps = 1/375 (0%)
Query: 2 GTGTHYAVMSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLI 61
G GTH AV+SSY+Y+SQGLRTY+ DNT+ G YIAPAFMDKLVVHI+KNFM+LPNIKVPLI
Sbjct: 92 GDGTHEAVLSSYEYLSQGLRTYDFDNTMGGFYIAPAFMDKLVVHISKNFMTLPNIKVPLI 151
Query: 62 LGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKG 121
LGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKG
Sbjct: 152 LGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKG 211
Query: 122 KMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPI 181
KMCCL INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPT VQLPGMYNKE+NPRVPI
Sbjct: 212 KMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEDNPRVPI 271
Query: 182 IVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQ 241
IVTGNDFSTLYAPLIRDGRMEKFYWAPTR+DR+GVCKGIFR DNV D+DIVK+VD+FPGQ
Sbjct: 272 IVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRVGVCKGIFRTDNVPDEDIVKIVDSFPGQ 331
Query: 242 SIDFFGALRARVYDDEVRKWISGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMI 301
SIDFFGALRARVYDDEVRKW+S GV +IGK LVNS+E P FEQP+MT+EKL+EYG M+
Sbjct: 332 SIDFFGALRARVYDDEVRKWVSDTGVENIGKRLVNSREGPPEFEQPKMTIEKLMEYGYML 391
Query: 302 VQEQENVKRVQLADKYLSEAALGEANEDAIQSGNFYGKAAQQM-NVPVPEGCTDPTAENF 360
V+EQENVKRVQLA++YLSEAALG+AN DA+++G+FYG+ AQQ N+PVPEGCTDP A+NF
Sbjct: 392 VKEQENVKRVQLAEQYLSEAALGDANSDAMKTGSFYGQGAQQAGNLPVPEGCTDPVAKNF 451
Query: 361 DPTARSDDGSCQYTL 375
DPTARSDDGSC YT
Sbjct: 452 DPTARSDDGSCLYTF 466
>sp|P10896|RCA_ARATH Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic
OS=Arabidopsis thaliana GN=RCA PE=1 SV=2
Length = 474
Score = 681 bits (1756), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 319/375 (85%), Positives = 341/375 (90%)
Query: 1 MGTGTHYAVMSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPL 60
MGTGTH+AV+SSY+Y+SQGLR YNLDN +DG YIAPAFMDKLVVHITKNF++LPNIKVPL
Sbjct: 100 MGTGTHHAVLSSYEYVSQGLRQYNLDNMMDGFYIAPAFMDKLVVHITKNFLTLPNIKVPL 159
Query: 61 ILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKK 120
ILGIWGGKGQGKSFQCELV AKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAD+IKK
Sbjct: 160 ILGIWGGKGQGKSFQCELVMAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADLIKK 219
Query: 121 GKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVP 180
GKMCCL INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPT VQLPGMYNKEEN RVP
Sbjct: 220 GKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENARVP 279
Query: 181 IIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPG 240
II TGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFR D + D+DIV LVD FPG
Sbjct: 280 IICTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRTDKIKDEDIVTLVDQFPG 339
Query: 241 QSIDFFGALRARVYDDEVRKWISGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNM 300
QSIDFFGALRARVYDDEVRK++ +GV IGK LVNS+E P FEQP MT EKL+EYGNM
Sbjct: 340 QSIDFFGALRARVYDDEVRKFVESLGVEKIGKRLVNSREGPPVFEQPEMTYEKLMEYGNM 399
Query: 301 IVQEQENVKRVQLADKYLSEAALGEANEDAIQSGNFYGKAAQQMNVPVPEGCTDPTAENF 360
+V EQENVKRVQLA+ YLS+AALG+AN DAI G FYGK AQQ+N+PVPEGCTDP AENF
Sbjct: 400 LVMEQENVKRVQLAETYLSQAALGDANADAIGRGTFYGKGAQQVNLPVPEGCTDPVAENF 459
Query: 361 DPTARSDDGSCQYTL 375
DPTARSDDG+C Y
Sbjct: 460 DPTARSDDGTCVYNF 474
>sp|Q40073|RCAA_HORVU Ribulose bisphosphate carboxylase/oxygenase activase A,
chloroplastic OS=Hordeum vulgare GN=RCAA PE=2 SV=1
Length = 464
Score = 670 bits (1729), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 308/374 (82%), Positives = 346/374 (92%)
Query: 2 GTGTHYAVMSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLI 61
G GTH AV+SSY+Y+SQGLR Y+ DNT+ G YIAPAFMDKLVVH++KNFM+LPNIK+PLI
Sbjct: 91 GHGTHEAVLSSYEYVSQGLRKYDFDNTMGGFYIAPAFMDKLVVHLSKNFMTLPNIKIPLI 150
Query: 62 LGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKG 121
LGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAD+IKKG
Sbjct: 151 LGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADMIKKG 210
Query: 122 KMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPI 181
KMCCL INDLDAGAGRMGGTTQYTVNNQMVNATLMNIAD PT VQLPGMYNK ENPRVPI
Sbjct: 211 KMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADAPTNVQLPGMYNKRENPRVPI 270
Query: 182 IVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQ 241
+VTGNDFSTLYAPLIRDGRMEKFYWAPTR+DRIGVCKGIF+ DNV+D+ +VK+VDTFPGQ
Sbjct: 271 VVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRIGVCKGIFQTDNVSDESVVKIVDTFPGQ 330
Query: 242 SIDFFGALRARVYDDEVRKWISGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMI 301
SIDFFGALRARVYDDEVRKW+ G+ +IGK LVNS++ TFEQP+MT+EKLLEYG+M+
Sbjct: 331 SIDFFGALRARVYDDEVRKWVGSTGIENIGKRLVNSRDGPVTFEQPKMTVEKLLEYGHML 390
Query: 302 VQEQENVKRVQLADKYLSEAALGEANEDAIQSGNFYGKAAQQMNVPVPEGCTDPTAENFD 361
VQEQ+NVKRVQLAD Y+S+AALG+AN+DA+++G+FYGK AQQ +PVPEGCTD A+N+D
Sbjct: 391 VQEQDNVKRVQLADTYMSQAALGDANQDAMKTGSFYGKGAQQGTLPVPEGCTDQNAKNYD 450
Query: 362 PTARSDDGSCQYTL 375
PTARSDDGSC YT
Sbjct: 451 PTARSDDGSCLYTF 464
>sp|P10871|RCA_SPIOL Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic
OS=Spinacia oleracea PE=1 SV=2
Length = 472
Score = 643 bits (1659), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 296/372 (79%), Positives = 334/372 (89%)
Query: 4 GTHYAVMSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILG 63
GTH + SS++Y SQGLR Y++DN + YIAPAFMDKLVVHITKNF++LPNIK+PLILG
Sbjct: 101 GTHVPIQSSFEYESQGLRKYDIDNMLGDFYIAPAFMDKLVVHITKNFLNLPNIKIPLILG 160
Query: 64 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 123
+WGGKGQGKSFQCELVFAK+GINPIMMSAGELESGNAGEPAKLIRQRYREAAD+I KGKM
Sbjct: 161 VWGGKGQGKSFQCELVFAKLGINPIMMSAGELESGNAGEPAKLIRQRYREAADLIAKGKM 220
Query: 124 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 183
C L INDL+ GAGRMGGTTQYTVNNQMVNATLMNIADNPT VQLPGMYNK++N RVPIIV
Sbjct: 221 CALFINDLEPGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQDNARVPIIV 280
Query: 184 TGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSI 243
TGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVC GIF+ D V + +VKLVD FPGQSI
Sbjct: 281 TGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCTGIFKTDKVPAEHVVKLVDAFPGQSI 340
Query: 244 DFFGALRARVYDDEVRKWISGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQ 303
DFFGALRARVY DEVRKW++ VGV ++GK LVNSK+ P FEQP MT++KL+EYGNM+VQ
Sbjct: 341 DFFGALRARVYHDEVRKWVNSVGVDNVGKKLVNSKDGPPVFEQPEMTLQKLMEYGNMLVQ 400
Query: 304 EQENVKRVQLADKYLSEAALGEANEDAIQSGNFYGKAAQQMNVPVPEGCTDPTAENFDPT 363
EQENVKRVQLAD+Y+S AALG+AN+DAI G F+GKAAQQ+++PV +GCTDP A+N+DPT
Sbjct: 401 EQENVKRVQLADQYMSSAALGDANKDAIDRGTFFGKAAQQVSLPVAQGCTDPEAKNYDPT 460
Query: 364 ARSDDGSCQYTL 375
ARSDDGSC Y L
Sbjct: 461 ARSDDGSCTYNL 472
>sp|Q7X999|RCA2_LARTR Ribulose bisphosphate carboxylase/oxygenase activase 2,
chloroplastic OS=Larrea tridentata GN=RCA2 PE=2 SV=1
Length = 435
Score = 640 bits (1651), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 301/336 (89%), Positives = 320/336 (95%)
Query: 1 MGTGTHYAVMSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPL 60
M +GTHYAVMSSYDYISQGLR YNLDN +DG YIAPAFMDKLVVHITKNF+SLPNIK+PL
Sbjct: 100 MQSGTHYAVMSSYDYISQGLRQYNLDNNMDGFYIAPAFMDKLVVHITKNFLSLPNIKIPL 159
Query: 61 ILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKK 120
ILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKK
Sbjct: 160 ILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKK 219
Query: 121 GKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVP 180
GKMCCL INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPT VQLPGMYNKEENPRVP
Sbjct: 220 GKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRVP 279
Query: 181 IIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPG 240
IIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFR DNV ++DIVK+VD FPG
Sbjct: 280 IIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRTDNVPEEDIVKVVDQFPG 339
Query: 241 QSIDFFGALRARVYDDEVRKWISGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNM 300
QSIDFFGALRARVYDDEVRKW+S VGV +IGK LVNSKE PTFEQP+MT++KLL+YGNM
Sbjct: 340 QSIDFFGALRARVYDDEVRKWVSEVGVDTIGKKLVNSKEGPPTFEQPKMTIDKLLQYGNM 399
Query: 301 IVQEQENVKRVQLADKYLSEAALGEANEDAIQSGNF 336
+V+EQENVKRVQLADKY+SEAALG+AN+DAI+ G F
Sbjct: 400 LVEEQENVKRVQLADKYMSEAALGDANQDAIKRGTF 435
>sp|Q40281|RCA_MALDO Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic
OS=Malus domestica GN=RCA PE=2 SV=1
Length = 437
Score = 636 bits (1640), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 300/337 (89%), Positives = 319/337 (94%)
Query: 2 GTGTHYAVMSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLI 61
G+GTH+A+MSSY+YIS GLR YN DN +DG YIAPAFMDKLVVHITKNFM+LPN+KVPLI
Sbjct: 101 GSGTHFAIMSSYEYISTGLRQYNFDNNMDGYYIAPAFMDKLVVHITKNFMTLPNMKVPLI 160
Query: 62 LGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKG 121
LGIWGGKGQGKSFQCELVFAKM I+PIMMSAGELESGNAGEPAKLIRQRYREAADII+KG
Sbjct: 161 LGIWGGKGQGKSFQCELVFAKMRISPIMMSAGELESGNAGEPAKLIRQRYREAADIIRKG 220
Query: 122 KMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPI 181
KMC L INDLDAGAGR+GGTTQYTVNNQMVNATLMNIADNPT VQLPGMYNKEENPRVPI
Sbjct: 221 KMCALFINDLDAGAGRLGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRVPI 280
Query: 182 IVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQ 241
IVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVC GIFR+DNVA +DIVKLVDTFPGQ
Sbjct: 281 IVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCIGIFRSDNVAKEDIVKLVDTFPGQ 340
Query: 242 SIDFFGALRARVYDDEVRKWISGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMI 301
SIDFFGALRARVYDDEVRKWI+GVGV SIGK LVNSKE PTFEQP+MT+EKLLEYGNM+
Sbjct: 341 SIDFFGALRARVYDDEVRKWITGVGVDSIGKKLVNSKEGPPTFEQPKMTIEKLLEYGNML 400
Query: 302 VQEQENVKRVQLADKYLSEAALGEANEDAIQSGNFYG 338
VQEQENVKRVQLADKYLSEAALG+AN DA+ +G FYG
Sbjct: 401 VQEQENVKRVQLADKYLSEAALGDANSDAMNTGTFYG 437
>sp|Q42450|RCAB_HORVU Ribulose bisphosphate carboxylase/oxygenase activase B,
chloroplastic OS=Hordeum vulgare GN=RCAB PE=2 SV=1
Length = 425
Score = 621 bits (1601), Expect = e-177, Method: Compositional matrix adjust.
Identities = 292/339 (86%), Positives = 318/339 (93%), Gaps = 1/339 (0%)
Query: 1 MGTGTHYAVMSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPL 60
MG GTH A++SSY+YISQGLR Y+ DNT+DGLYIAPAFMDKL+VH+ KNFM+LPNIKVPL
Sbjct: 88 MGDGTHEAILSSYEYISQGLRKYDFDNTMDGLYIAPAFMDKLIVHLAKNFMTLPNIKVPL 147
Query: 61 ILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKK 120
ILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGN GEPAKLIRQRYREAADII K
Sbjct: 148 ILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGN-GEPAKLIRQRYREAADIINK 206
Query: 121 GKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVP 180
GKMCCL INDLDAGAGRMGGTTQYTVNNQMVNATLMNIAD PT VQLPGMYNKEENPRVP
Sbjct: 207 GKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADAPTNVQLPGMYNKEENPRVP 266
Query: 181 IIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPG 240
IIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFR DNV D+ +V+LVDTFPG
Sbjct: 267 IIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRTDNVPDEAVVRLVDTFPG 326
Query: 241 QSIDFFGALRARVYDDEVRKWISGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNM 300
QSIDFFGALRARVYDDEVRKW+ +GV +I K LVNS+E PTF+QP+MT+EKL+EYG+M
Sbjct: 327 QSIDFFGALRARVYDDEVRKWVGEIGVENISKRLVNSREGPPTFDQPKMTIEKLMEYGHM 386
Query: 301 IVQEQENVKRVQLADKYLSEAALGEANEDAIQSGNFYGK 339
+VQEQENVKRVQLADKYLSEAALG+AN+DA+++G FYGK
Sbjct: 387 LVQEQENVKRVQLADKYLSEAALGQANDDAMKTGAFYGK 425
>sp|Q40460|RCA1_TOBAC Ribulose bisphosphate carboxylase/oxygenase activase 1,
chloroplastic OS=Nicotiana tabacum PE=1 SV=1
Length = 442
Score = 616 bits (1589), Expect = e-176, Method: Compositional matrix adjust.
Identities = 287/336 (85%), Positives = 310/336 (92%)
Query: 2 GTGTHYAVMSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLI 61
GTGTH+AV+ SY+Y+SQGLR YNLDN +DG YIAPAFMDKLVVHITKNF+ LPNIKVPLI
Sbjct: 105 GTGTHHAVLQSYEYVSQGLRQYNLDNKLDGFYIAPAFMDKLVVHITKNFLKLPNIKVPLI 164
Query: 62 LGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKG 121
LGIWGGKGQGKSFQCELVF KMGINPIMMSAGELESGNAGEPAKLIRQRYREAA+II+KG
Sbjct: 165 LGIWGGKGQGKSFQCELVFRKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKG 224
Query: 122 KMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPI 181
MCCL INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPT VQLPGMYNK+EN RVPI
Sbjct: 225 NMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPI 284
Query: 182 IVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQ 241
IVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVC GIFR DNV +D+VK+VD FPGQ
Sbjct: 285 IVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCTGIFRTDNVPAEDVVKIVDNFPGQ 344
Query: 242 SIDFFGALRARVYDDEVRKWISGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMI 301
SIDFFGALRARVYDDEVRKW+SG G+ IG L+NS + PTFEQP+MT+EKLLEYGNM+
Sbjct: 345 SIDFFGALRARVYDDEVRKWVSGTGIEKIGDKLLNSFDGPPTFEQPKMTIEKLLEYGNML 404
Query: 302 VQEQENVKRVQLADKYLSEAALGEANEDAIQSGNFY 337
VQEQENVKRVQLADKYL EAALG+AN DAI +G+F+
Sbjct: 405 VQEQENVKRVQLADKYLKEAALGDANADAINNGSFF 440
>sp|O98997|RCA_VIGRR Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic
OS=Vigna radiata var. radiata GN=RCA PE=2 SV=2
Length = 439
Score = 615 bits (1587), Expect = e-175, Method: Compositional matrix adjust.
Identities = 291/337 (86%), Positives = 313/337 (92%), Gaps = 2/337 (0%)
Query: 1 MGTGTHYAVMSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPL 60
M GTHYAVMSSY+Y+S GLR LDN DG YIAPAF+DKLVVHITKNFM+LPNIKVPL
Sbjct: 104 MDAGTHYAVMSSYEYLSTGLR--QLDNIKDGFYIAPAFLDKLVVHITKNFMTLPNIKVPL 161
Query: 61 ILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKK 120
ILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAD+I K
Sbjct: 162 ILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADLIAK 221
Query: 121 GKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVP 180
GKMC L INDLDAGAGR+GGTTQYTVNNQMVNATLMNIADNPT VQLPGMYNKEEN RVP
Sbjct: 222 GKMCALFINDLDAGAGRLGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENARVP 281
Query: 181 IIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPG 240
IIVTGNDFSTLYAPLIRDGRMEKFYWAPTR+DR+GVCKGIFR D V ++DI KLVDTFPG
Sbjct: 282 IIVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRVGVCKGIFRTDGVPEEDITKLVDTFPG 341
Query: 241 QSIDFFGALRARVYDDEVRKWISGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNM 300
QSIDFFGALRARVYDDEVRKWISGVGV + GK LVNSKE PTF+QP+M+++KLL+YGNM
Sbjct: 342 QSIDFFGALRARVYDDEVRKWISGVGVDATGKKLVNSKEGPPTFDQPKMSLDKLLQYGNM 401
Query: 301 IVQEQENVKRVQLADKYLSEAALGEANEDAIQSGNFY 337
+VQEQENVKRVQLADKYL+EAALG ANEDAI+SG+F+
Sbjct: 402 LVQEQENVKRVQLADKYLNEAALGNANEDAIKSGSFF 438
>sp|Q40565|RCA2_TOBAC Ribulose bisphosphate carboxylase/oxygenase activase 2,
chloroplastic OS=Nicotiana tabacum GN=RCA PE=2 SV=1
Length = 439
Score = 613 bits (1582), Expect = e-175, Method: Compositional matrix adjust.
Identities = 283/335 (84%), Positives = 312/335 (93%)
Query: 2 GTGTHYAVMSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLI 61
GTGTH+AV+ SY+Y+SQGLR YN+DNT+DG YIAP+FMDKLVVHITKNF+ LPNIKVPLI
Sbjct: 105 GTGTHHAVLQSYEYVSQGLRQYNMDNTLDGFYIAPSFMDKLVVHITKNFLKLPNIKVPLI 164
Query: 62 LGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKG 121
LG+WGGKGQGKSFQCELVF KMGINPIMMSAGELESGNAGEPAKLIRQRYREAA+II+KG
Sbjct: 165 LGVWGGKGQGKSFQCELVFRKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKG 224
Query: 122 KMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPI 181
+CCL INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPT VQLPGMYNK+EN RVPI
Sbjct: 225 NICCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPI 284
Query: 182 IVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQ 241
IVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFR DNV ++ ++K+VDTFPGQ
Sbjct: 285 IVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRTDNVPEEAVIKIVDTFPGQ 344
Query: 242 SIDFFGALRARVYDDEVRKWISGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMI 301
SIDFFGALRARVYDDEVRKW+SG G+ +IG L+NS + PTFEQP+MT+EKLLEYGNM+
Sbjct: 345 SIDFFGALRARVYDDEVRKWVSGTGIEAIGDKLLNSFDGPPTFEQPKMTVEKLLEYGNML 404
Query: 302 VQEQENVKRVQLADKYLSEAALGEANEDAIQSGNF 336
VQEQENVKRVQLA+ YL EAALG+AN DAI +GNF
Sbjct: 405 VQEQENVKRVQLAETYLKEAALGDANADAINTGNF 439
>sp|O49074|RCA_SOLPN Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic
OS=Solanum pennellii PE=2 SV=1
Length = 459
Score = 612 bits (1579), Expect = e-174, Method: Compositional matrix adjust.
Identities = 281/333 (84%), Positives = 311/333 (93%)
Query: 2 GTGTHYAVMSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLI 61
GTGTH+A+M+SY+Y+SQ L+TY LDN +DG YIAPAFMDKLVVHITKNF++LPNIKVPLI
Sbjct: 100 GTGTHHAIMNSYEYVSQALKTYQLDNKLDGFYIAPAFMDKLVVHITKNFLTLPNIKVPLI 159
Query: 62 LGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKG 121
LG+WGGKGQGKSFQCELVF KMGINPIMMSAGELESGNAGEPAKLIRQRYREAA+II+KG
Sbjct: 160 LGVWGGKGQGKSFQCELVFRKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKG 219
Query: 122 KMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPI 181
MCCL INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPT VQLPGMYNK+EN RVPI
Sbjct: 220 NMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPI 279
Query: 182 IVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQ 241
IVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFR DNV ++ +VK+VD+FPGQ
Sbjct: 280 IVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRTDNVPEEAVVKIVDSFPGQ 339
Query: 242 SIDFFGALRARVYDDEVRKWISGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMI 301
SIDFFGALRARVYDDEVRKW+SG G+ IG+ L+NS++ PTFEQP+MT+EKLLEYGNM+
Sbjct: 340 SIDFFGALRARVYDDEVRKWVSGTGIELIGEKLLNSRDGPPTFEQPKMTLEKLLEYGNML 399
Query: 302 VQEQENVKRVQLADKYLSEAALGEANEDAIQSG 334
VQEQENVKRVQLA+ YL EAALG+AN DAI +G
Sbjct: 400 VQEQENVKRVQLAETYLKEAALGDANADAINTG 432
>sp|Q9ZT00|RCA_MAIZE Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic
OS=Zea mays GN=RCA1 PE=2 SV=3
Length = 433
Score = 612 bits (1578), Expect = e-174, Method: Compositional matrix adjust.
Identities = 284/337 (84%), Positives = 313/337 (92%)
Query: 1 MGTGTHYAVMSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPL 60
MG GTH AV+SSYDYISQG ++YN DN +DG YIA FMDKLVVH++KNFM+LPNIKVPL
Sbjct: 96 MGDGTHVAVLSSYDYISQGQKSYNFDNMMDGFYIAKGFMDKLVVHLSKNFMTLPNIKVPL 155
Query: 61 ILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKK 120
ILGIWGGKGQGKSFQCELVFAKMGI PIMMSAGELESGNAGEPAKLIRQRYREA+D+IKK
Sbjct: 156 ILGIWGGKGQGKSFQCELVFAKMGITPIMMSAGELESGNAGEPAKLIRQRYREASDLIKK 215
Query: 121 GKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVP 180
GKM CL INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPT VQLPGMYNKE+NPRVP
Sbjct: 216 GKMSCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEDNPRVP 275
Query: 181 IIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPG 240
IIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFR D V ++ +V+LVDTFPG
Sbjct: 276 IIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRTDGVDEEHVVQLVDTFPG 335
Query: 241 QSIDFFGALRARVYDDEVRKWISGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNM 300
QSIDFFGALRARVYDDEVR+W+S GV +I + LVNSKE PTFEQP++T+EKLLEYG+M
Sbjct: 336 QSIDFFGALRARVYDDEVRRWVSETGVENIARKLVNSKEGPPTFEQPKITIEKLLEYGHM 395
Query: 301 IVQEQENVKRVQLADKYLSEAALGEANEDAIQSGNFY 337
+V EQENVKRVQLADKYL+EAALGEANEDA+++G+F+
Sbjct: 396 LVAEQENVKRVQLADKYLNEAALGEANEDAMKTGSFF 432
>sp|O64981|RCA_PHAVU Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic
OS=Phaseolus vulgaris GN=RCA1 PE=2 SV=1
Length = 441
Score = 609 bits (1571), Expect = e-173, Method: Compositional matrix adjust.
Identities = 286/337 (84%), Positives = 310/337 (91%)
Query: 1 MGTGTHYAVMSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPL 60
M GTHYAV+SS+ Y+S GLR YN DN DG YIAPAF+DKLVVHI KNFM+LPNIKVPL
Sbjct: 104 MDAGTHYAVISSHKYLSAGLRQYNFDNIKDGFYIAPAFLDKLVVHIAKNFMTLPNIKVPL 163
Query: 61 ILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKK 120
ILG+WGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREA+D+IKK
Sbjct: 164 ILGVWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREASDLIKK 223
Query: 121 GKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVP 180
GKMC L INDLDAGAGR+GGTTQYTVNNQMVNATLMNIADNPT VQLPGMYNKE+N RVP
Sbjct: 224 GKMCVLFINDLDAGAGRLGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEDNARVP 283
Query: 181 IIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPG 240
IIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFR D V + DIV+LVD PG
Sbjct: 284 IIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRTDGVPEKDIVELVDKHPG 343
Query: 241 QSIDFFGALRARVYDDEVRKWISGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNM 300
QSIDFFGALRARVYDDEVRKWISGVGV S+GK LVNSKE PTF+QP+MT++KLL Y +M
Sbjct: 344 QSIDFFGALRARVYDDEVRKWISGVGVDSVGKKLVNSKEGPPTFDQPKMTLDKLLLYASM 403
Query: 301 IVQEQENVKRVQLADKYLSEAALGEANEDAIQSGNFY 337
+VQEQENVKRVQLAD+YL+EAALG ANEDAI+SG+F+
Sbjct: 404 LVQEQENVKRVQLADQYLNEAALGNANEDAIKSGSFF 440
>sp|Q01587|RCA_CUCSA Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic
OS=Cucumis sativus PE=2 SV=1
Length = 413
Score = 581 bits (1498), Expect = e-165, Method: Compositional matrix adjust.
Identities = 273/314 (86%), Positives = 292/314 (92%)
Query: 1 MGTGTHYAVMSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPL 60
MGTGTH AV+SSY+YIS GLR Y+ DN +DG YIAPAFMDKL VHI KNF++LPNIKVPL
Sbjct: 97 MGTGTHNAVLSSYEYISAGLRDYSYDNNVDGFYIAPAFMDKLTVHIVKNFLTLPNIKVPL 156
Query: 61 ILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKK 120
ILG+WGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKK
Sbjct: 157 ILGVWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKK 216
Query: 121 GKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVP 180
GKMCCL INDLDAGAGR+GGTTQYTVNNQMVNATLMNIADNPT VQLPGMYNKEENPRVP
Sbjct: 217 GKMCCLFINDLDAGAGRLGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRVP 276
Query: 181 IIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPG 240
IIVTGNDFSTLYAPLIRDGRM+KFYWAPTREDRIG+C GIFR D V +DIVKLVDTFPG
Sbjct: 277 IIVTGNDFSTLYAPLIRDGRMDKFYWAPTREDRIGICTGIFRTDGVPFEDIVKLVDTFPG 336
Query: 241 QSIDFFGALRARVYDDEVRKWISGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNM 300
QSIDFFGALRARVYDDEVRKW GVGV IG++LVNSKE+ PTF+QP+MT+EKLLEYGNM
Sbjct: 337 QSIDFFGALRARVYDDEVRKWAVGVGVERIGRNLVNSKESPPTFDQPKMTIEKLLEYGNM 396
Query: 301 IVQEQENVKRVQLA 314
+V EQENVKRV+L
Sbjct: 397 LVMEQENVKRVKLV 410
>sp|P23489|RCA_CHLRE Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic
OS=Chlamydomonas reinhardtii PE=2 SV=1
Length = 408
Score = 480 bits (1235), Expect = e-135, Method: Compositional matrix adjust.
Identities = 231/322 (71%), Positives = 265/322 (82%), Gaps = 7/322 (2%)
Query: 4 GTHYAVMSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILG 63
GTH AV+SS +Y+SQ ++N N DG YI+PAF+DK+ +HI KNFM LP IKVPLILG
Sbjct: 78 GTHNAVLSSQEYLSQSRASFN--NIEDGFYISPAFLDKMTIHIAKNFMDLPKIKVPLILG 135
Query: 64 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 123
IWGGKGQGK+FQC L + K+GI PI+MSAGELESGNAGEPAKLIR RYREA+DIIKKG+M
Sbjct: 136 IWGGKGQGKTFQCALAYKKLGIAPIVMSAGELESGNAGEPAKLIRTRYREASDIIKKGRM 195
Query: 124 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 183
C L INDLDAGAGRMG TTQYTVNNQMVNATLMNIADNPT VQLPG+Y EE PRVPI+
Sbjct: 196 CSLFINDLDAGAGRMGDTTQYTVNNQMVNATLMNIADNPTNVQLPGVYKNEEIPRVPIVC 255
Query: 184 TGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSI 243
TGNDFSTLYAPLIRDGRMEK+YW PTREDRIGVC GIF+ DNV ++ LVDTFPGQSI
Sbjct: 256 TGNDFSTLYAPLIRDGRMEKYYWNPTREDRIGVCMGIFQEDNVQRREVENLVDTFPGQSI 315
Query: 244 DFFGALRARVYDDEVRKWISGVGVGSIGKSLVNSKEAAPTFEQPRMTME--KLLEYGNMI 301
DFFGALRARVYDD VR+WI+ GV IG+ LVN+++ P+++M+ L++YG +
Sbjct: 316 DFFGALRARVYDDMVRQWITDTGVDKIGQQLVNARQKVAM---PKVSMDLNVLIKYGKSL 372
Query: 302 VQEQENVKRVQLADKYLSEAAL 323
V EQENVKRVQLAD YLS A L
Sbjct: 373 VDEQENVKRVQLADAYLSGAEL 394
>sp|Q06721|RCA_ANASC Ribulose bisphosphate carboxylase/oxygenase activase OS=Anabaena
sp. (strain CA / ATCC 33047) GN=rca PE=3 SV=1
Length = 415
Score = 381 bits (978), Expect = e-105, Method: Compositional matrix adjust.
Identities = 177/286 (61%), Positives = 222/286 (77%), Gaps = 1/286 (0%)
Query: 33 YIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSA 92
YIAP F+DKL VHITKNF++LP ++VPLILGI G KG+GK+FQCEL F KMG+ ++S
Sbjct: 4 YIAPRFLDKLAVHITKNFLNLPGVRVPLILGIHGRKGEGKTFQCELAFEKMGVEVTLISG 63
Query: 93 GELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLMINDLDAGAGRMGGTTQYTVNNQMV 151
GELES +AG+PA+LIR RYRE A++IK +GKMC LMINDLDAGAGR TQYTVN Q+V
Sbjct: 64 GELESPDAGDPARLIRLRYRETAELIKVRGKMCVLMINDLDAGAGRFDEGTQYTVNTQLV 123
Query: 152 NATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRE 211
NATLMNIADNPT VQLPG Y+ RVPIIVTGNDFSTLYAPLIRDGRMEKFYW P R+
Sbjct: 124 NATLMNIADNPTDVQLPGSYDSTPLRRVPIIVTGNDFSTLYAPLIRDGRMEKFYWEPHRD 183
Query: 212 DRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISGVGVGSIG 271
+++G+ GIF D ++ D+ KLVD+FP QSIDFF ALR+R+YD+++R +I VG ++
Sbjct: 184 EKVGIVGGIFAEDGLSQRDVEKLVDSFPNQSIDFFSALRSRIYDEQIRDFIHQVGYENVS 243
Query: 272 KSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKY 317
+VNS E P F++P T+ L+E N +V EQ+ ++ QL D+Y
Sbjct: 244 LRVVNSLEGPPAFKKPDFTLSHLIESANFMVAEQKRIETSQLVDEY 289
>sp|P58555|RCA_NOSS1 Ribulose bisphosphate carboxylase/oxygenase activase OS=Nostoc sp.
(strain PCC 7120 / UTEX 2576) GN=rca PE=3 SV=1
Length = 414
Score = 380 bits (977), Expect = e-105, Method: Compositional matrix adjust.
Identities = 180/286 (62%), Positives = 222/286 (77%), Gaps = 1/286 (0%)
Query: 33 YIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSA 92
YIAP F+DKL VHITKNF+++P ++VPLILGI G KG+GK+FQCEL F KMGI ++S
Sbjct: 4 YIAPRFLDKLAVHITKNFLNIPGVRVPLILGIHGRKGEGKTFQCELAFEKMGIEVTLISG 63
Query: 93 GELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLMINDLDAGAGRMGGTTQYTVNNQMV 151
GELES +AG+PA+LIR RYRE A++IK +GKMC LMINDLDAGAGR TQYTVN Q+V
Sbjct: 64 GELESPDAGDPARLIRLRYRETAELIKVRGKMCVLMINDLDAGAGRFDEGTQYTVNTQLV 123
Query: 152 NATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRE 211
NATLMNIADNPT VQLPG Y+ RVPIIVTGNDFSTLYAPLIRDGRMEKFYW P R+
Sbjct: 124 NATLMNIADNPTDVQLPGSYDSNPIRRVPIIVTGNDFSTLYAPLIRDGRMEKFYWEPNRD 183
Query: 212 DRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISGVGVGSIG 271
D++G+ GIF D ++ +I +LVDTFP QSIDFF ALR+R+YD ++R +I VG I
Sbjct: 184 DKVGIVGGIFAEDGLSQREIEQLVDTFPKQSIDFFSALRSRIYDIQIRDFIHKVGFERIS 243
Query: 272 KSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKY 317
+VNS EA P F++P ++ L+E GN+++ EQ+ V QL D+Y
Sbjct: 244 LRVVNSLEAPPEFKKPDFSLAHLIESGNLVLGEQQRVDNSQLVDEY 289
>sp|P85086|RCA_ARAHY Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic
(Fragments) OS=Arachis hypogaea GN=RCA PE=1 SV=1
Length = 140
Score = 152 bits (384), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 110/250 (44%), Positives = 111/250 (44%), Gaps = 135/250 (54%)
Query: 1 MGTGTHYAVMSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPL 60
M GTHYAVMSSY+YISQGLR VPL
Sbjct: 26 MNDGTHYAVMSSYEYISQGLR------------------------------------VPL 49
Query: 61 ILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKK 120
ILGIWGGK MGINPIMMSAGELESGNAGEPA
Sbjct: 50 ILGIWGGK--------------MGINPIMMSAGELESGNAGEPA---------------- 79
Query: 121 GKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVP 180
KMCCL INDLDAGAG RVP
Sbjct: 80 -KMCCLFINDLDAGAG-----------------------------------------RVP 97
Query: 181 IIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPG 240
IIVTGNDFSTLYAPLI RIGVC GIFR LVDTFPG
Sbjct: 98 IIVTGNDFSTLYAPLI----------------RIGVCTGIFR-----------LVDTFPG 130
Query: 241 QSIDFFGALR 250
QSIDFFGALR
Sbjct: 131 QSIDFFGALR 140
>sp|P85111|RCA_VITSX Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic
(Fragments) OS=Vitis sp. PE=1 SV=1
Length = 62
Score = 72.0 bits (175), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 39/63 (61%), Positives = 41/63 (65%), Gaps = 17/63 (26%)
Query: 80 FAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMG 139
+MGINPIMMSAGELESGNAGEPA KMCCL INDLDAGAGR+G
Sbjct: 13 ITRMGINPIMMSAGELESGNAGEPA-----------------KMCCLFINDLDAGAGRIG 55
Query: 140 GTT 142
T
Sbjct: 56 VCT 58
>sp|O28972|Y1297_ARCFU Cell division cycle protein 48 homolog AF_1297 OS=Archaeoglobus
fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM
9628 / NBRC 100126) GN=AF_1297 PE=3 SV=1
Length = 733
Score = 57.8 bits (138), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 52/191 (27%), Positives = 88/191 (46%), Gaps = 19/191 (9%)
Query: 55 NIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREA 114
NIK P + ++G G GK+ + V + N I + EL S GE K +R+ +R+A
Sbjct: 485 NIKPPRGILLFGPPGTGKTLLAKAVANESNANFISVKGPELLSKWVGESEKHVREMFRKA 544
Query: 115 ADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKE 174
+ C + +++D+ A R GG V ++V+ L +L G+ E
Sbjct: 545 RQVAP----CVIFFDEIDSLAPRRGGIGDSHVTERVVSQLL---------TELDGL---E 588
Query: 175 ENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCKGIFRNDNVADD-DI 231
E V +I N + L+R GR+E+ + P ++ R+ + K R +ADD +I
Sbjct: 589 ELKDVVVIAATNRPDMIDPALLRPGRLERHIYIPPPDKKARVEIFKIHLRGKPLADDVNI 648
Query: 232 VKLVDTFPGQS 242
+L + G S
Sbjct: 649 EELAEKTEGYS 659
>sp|Q58556|Y1156_METJA Cell division cycle protein 48 homolog MJ1156 OS=Methanocaldococcus
jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM
10045 / NBRC 100440) GN=MJ1156 PE=3 SV=1
Length = 903
Score = 54.7 bits (130), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 46/188 (24%), Positives = 89/188 (47%), Gaps = 24/188 (12%)
Query: 64 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 123
++G G GK+ + V + G N I + E+ S GE K IR+ +R+A ++
Sbjct: 491 LFGPPGTGKTLLAKAVANESGANFISVKGPEIFSKWVGESEKAIREIFRKA----RQSAP 546
Query: 124 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 183
C + +++DA A + G V +++VN L +L GM E P+ +++
Sbjct: 547 CIIFFDEIDAIAPKRGRDLSSAVTDKVVNQLL---------TELDGM----EEPKDVVVI 593
Query: 184 TGNDFSTLYAP-LIRDGRMEKFYWAPTRED--RIGVCKGIFRNDNVADD----DIVKLVD 236
+ + P L+R GR+++ P ++ R+ + K R+ N+A+D ++ K +
Sbjct: 594 AATNRPDIIDPALLRPGRLDRVILVPVPDEKARLDIFKIHTRSMNLAEDVNLEELAKKTE 653
Query: 237 TFPGQSID 244
+ G I+
Sbjct: 654 GYTGADIE 661
>sp|P62335|PRS10_SPETR 26S protease regulatory subunit 10B OS=Spermophilus
tridecemlineatus GN=PSMC6 PE=2 SV=1
Length = 389
Score = 49.7 bits (117), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 46/186 (24%), Positives = 88/186 (47%), Gaps = 20/186 (10%)
Query: 64 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 123
++G G GK+ V +++ N + + + + GE A+LIR+ + A D +
Sbjct: 172 LYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIREMFNYARD----HQP 227
Query: 124 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 183
C + ++++DA GR ++ T ++ + TLM + + Q+ G + RV +I+
Sbjct: 228 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGF---DTLHRVKMIM 277
Query: 184 TGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCK----GIFRNDNVADDDIVKLVDT 237
N TL L+R GR+++ P + R+ + K I ++ + + IVKL D
Sbjct: 278 ATNRPDTLDPALLRPGRLDRKIHIDLPNEQARLDILKIHAGPITKHGEIDYEAIVKLSDG 337
Query: 238 FPGQSI 243
F G +
Sbjct: 338 FNGADL 343
>sp|P62334|PRS10_MOUSE 26S protease regulatory subunit 10B OS=Mus musculus GN=Psmc6 PE=1
SV=1
Length = 389
Score = 49.7 bits (117), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 46/186 (24%), Positives = 88/186 (47%), Gaps = 20/186 (10%)
Query: 64 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 123
++G G GK+ V +++ N + + + + GE A+LIR+ + A D +
Sbjct: 172 LYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIREMFNYARD----HQP 227
Query: 124 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 183
C + ++++DA GR ++ T ++ + TLM + + Q+ G + RV +I+
Sbjct: 228 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGF---DTLHRVKMIM 277
Query: 184 TGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCK----GIFRNDNVADDDIVKLVDT 237
N TL L+R GR+++ P + R+ + K I ++ + + IVKL D
Sbjct: 278 ATNRPDTLDPALLRPGRLDRKIHIDLPNEQARLDILKIHAGPITKHGEIDYEAIVKLSDG 337
Query: 238 FPGQSI 243
F G +
Sbjct: 338 FNGADL 343
>sp|P62333|PRS10_HUMAN 26S protease regulatory subunit 10B OS=Homo sapiens GN=PSMC6 PE=1
SV=1
Length = 389
Score = 49.7 bits (117), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 46/186 (24%), Positives = 88/186 (47%), Gaps = 20/186 (10%)
Query: 64 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 123
++G G GK+ V +++ N + + + + GE A+LIR+ + A D +
Sbjct: 172 LYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIREMFNYARD----HQP 227
Query: 124 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 183
C + ++++DA GR ++ T ++ + TLM + + Q+ G + RV +I+
Sbjct: 228 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGF---DTLHRVKMIM 277
Query: 184 TGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCK----GIFRNDNVADDDIVKLVDT 237
N TL L+R GR+++ P + R+ + K I ++ + + IVKL D
Sbjct: 278 ATNRPDTLDPALLRPGRLDRKIHIDLPNEQARLDILKIHAGPITKHGEIDYEAIVKLSDG 337
Query: 238 FPGQSI 243
F G +
Sbjct: 338 FNGADL 343
>sp|Q2KIW6|PRS10_BOVIN 26S protease regulatory subunit 10B OS=Bos taurus GN=PSMC6 PE=2
SV=1
Length = 389
Score = 49.7 bits (117), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 46/186 (24%), Positives = 88/186 (47%), Gaps = 20/186 (10%)
Query: 64 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 123
++G G GK+ V +++ N + + + + GE A+LIR+ + A D +
Sbjct: 172 LYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIREMFNYARD----HQP 227
Query: 124 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 183
C + ++++DA GR ++ T ++ + TLM + + Q+ G + RV +I+
Sbjct: 228 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGF---DTLHRVKMIM 277
Query: 184 TGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCK----GIFRNDNVADDDIVKLVDT 237
N TL L+R GR+++ P + R+ + K I ++ + + IVKL D
Sbjct: 278 ATNRPDTLDPALLRPGRLDRKIHIDLPNEQARLDILKIHAGPITKHGEIDYEAIVKLSDG 337
Query: 238 FPGQSI 243
F G +
Sbjct: 338 FNGADL 343
>sp|Q54CS8|PEX6_DICDI Peroxisomal biogenesis factor 6 OS=Dictyostelium discoideum GN=pex6
PE=3 SV=1
Length = 1201
Score = 48.9 bits (115), Expect = 7e-05, Method: Composition-based stats.
Identities = 54/222 (24%), Positives = 104/222 (46%), Gaps = 24/222 (10%)
Query: 64 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 123
++G G GK+ + + + +N + + EL + GE K IR+ + +A ++ K
Sbjct: 957 LFGPPGTGKTLLAKAIATECSLNFLSVKGPELINMYIGESEKNIREIFNKA----RQAKP 1012
Query: 124 CCLMINDLDAGA-GRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPII 182
C + ++LD+ A R G V +++V+ L +L GM +++ V II
Sbjct: 1013 CVIFFDELDSLAPSRGNGADSGGVMDRVVSQLL---------AELDGM---QKSSDVFII 1060
Query: 183 VTGNDFSTLYAPLIRDGRMEKFYW---APTREDRIGVCKGIFRNDNVADD-DIVKLVDTF 238
N L + L+R GR+++ + + +E++ + + + R N+ADD D+ K+V+
Sbjct: 1061 GATNRPDLLDSSLMRPGRLDRLLYLGISSEKENQFKILQALTRKFNLADDVDLRKVVENC 1120
Query: 239 PGQ--SIDFFGALRARVYDDEVRKWISGVGVGSIGKSLVNSK 278
P DF+ AL + + + I+ G I + N K
Sbjct: 1121 PMNLTGADFY-ALASDAMSNAFHERITASINGEINEEEQNQK 1161
>sp|P84562|RCA_POPEU Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic
(Fragments) OS=Populus euphratica PE=1 SV=1
Length = 32
Score = 48.1 bits (113), Expect = 9e-05, Method: Composition-based stats.
Identities = 28/60 (46%), Positives = 29/60 (48%), Gaps = 28/60 (46%)
Query: 234 LVDTFPGQSIDFFGALRARVYDDEVRKWISGVGVGSIGKSLVNSKEAAPTFEQPRMTMEK 293
LVDTFPGQSIDFFGALR E PTFEQP MT+EK
Sbjct: 1 LVDTFPGQSIDFFGALR----------------------------EGPPTFEQPAMTIEK 32
>sp|Q9SEI3|PS10A_ARATH 26S protease regulatory subunit 10B homolog A OS=Arabidopsis
thaliana GN=RPT4A PE=2 SV=1
Length = 399
Score = 48.1 bits (113), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 47/194 (24%), Positives = 92/194 (47%), Gaps = 20/194 (10%)
Query: 56 IKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 115
IK P + ++G G GK+ + + + N + + + + GE A+LIR+ + A
Sbjct: 170 IKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFNYA- 228
Query: 116 DIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEE 175
++ + C + ++++DA GR ++ T ++ + TLM + + QL G N
Sbjct: 229 ---REHQPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QLDGFDNL-- 276
Query: 176 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCK----GIFRNDNVADD 229
+V +I+ N L L+R GR+++ P + R+ + K GI ++ + +
Sbjct: 277 -GKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMDILKIHAAGIAKHGEIDYE 335
Query: 230 DIVKLVDTFPGQSI 243
IVKL + F G +
Sbjct: 336 AIVKLAEGFNGADL 349
>sp|P53549|PRS10_YEAST 26S protease subunit RPT4 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=RPT4 PE=1 SV=4
Length = 437
Score = 47.8 bits (112), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/153 (27%), Positives = 73/153 (47%), Gaps = 14/153 (9%)
Query: 56 IKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 115
IK P + ++G G GK+ + V A +G N I A + GE A++IR+ + A
Sbjct: 212 IKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVDKYIGESARIIREMFAYA- 270
Query: 116 DIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEE 175
K+ + C + ++++DA GR ++ T ++ + TLM + Q+ G N +
Sbjct: 271 ---KEHEPCIIFMDEVDAIGGRR--FSEGTSADREIQRTLMEL-----LTQMDGFDNLGQ 320
Query: 176 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAP 208
II+ N TL L+R GR+++ P
Sbjct: 321 ---TKIIMATNRPDTLDPALLRPGRLDRKVEIP 350
>sp|D4GUJ7|PAN1_HALVD Proteasome-activating nucleotidase 1 OS=Haloferax volcanii (strain
ATCC 29605 / DSM 3757 / JCM 8879 / NBRC 14742 / NCIMB
2012 / VKM B-1768 / DS2) GN=pan1 PE=2 SV=2
Length = 406
Score = 47.0 bits (110), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 47/176 (26%), Positives = 79/176 (44%), Gaps = 17/176 (9%)
Query: 64 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 123
++G G GK+ + V + + I M+ EL GE AKL+R + ++ ++ +
Sbjct: 189 LYGPPGTGKTMLAKAVANQTNASFIKMAGSELVHKFIGEGAKLVRDLF----EVARENEP 244
Query: 124 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 183
+ I+++DA A + T T + V T+M + L M +E + II
Sbjct: 245 AVIFIDEIDAIASKR--TDSKTSGDAEVQRTMMQL--------LAEMDGFDERGNIRIIA 294
Query: 184 TGNDFSTLYAPLIRDGRMEKFYWAPT-REDRIGVCKGIF-RNDNVADD-DIVKLVD 236
N F L ++R GR ++ P ED + I R NV+DD D V+L +
Sbjct: 295 ATNRFDMLDPAILRPGRFDRLIEVPKPNEDGREIIFQIHTRKMNVSDDVDFVELAE 350
>sp|Q5UT56|PAN2_HALVD Proteasome-activating nucleotidase 2 OS=Haloferax volcanii (strain
ATCC 29605 / DSM 3757 / JCM 8879 / NBRC 14742 / NCIMB
2012 / VKM B-1768 / DS2) GN=pan2 PE=2 SV=1
Length = 412
Score = 47.0 bits (110), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 44/168 (26%), Positives = 74/168 (44%), Gaps = 16/168 (9%)
Query: 64 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 123
++G G GK+ + V + + I M+ EL GE A+L+R ++ AA + +
Sbjct: 191 LYGPPGTGKTMLAKAVANETNASFIKMAGSELVQKFIGEGARLVRDLFKLAA----EREP 246
Query: 124 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 183
+ I+++DA A + T T + V T+M + L M ++ + II
Sbjct: 247 VVVFIDEIDAVASKR--TDSKTSGDAEVQRTMMQL--------LSEMDGFDDRGDIRIIA 296
Query: 184 TGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCKGIFRNDNVADD 229
N F L ++R GR ++ P E R + R+ NVADD
Sbjct: 297 ATNRFDMLDEAILRPGRFDRLIEVPKPAVEGRRHILDIHTRDMNVADD 344
>sp|Q9ZPR1|CD48B_ARATH Cell division control protein 48 homolog B OS=Arabidopsis thaliana
GN=CDC48B PE=2 SV=1
Length = 603
Score = 46.6 bits (109), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 38/165 (23%), Positives = 70/165 (42%), Gaps = 13/165 (7%)
Query: 56 IKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 115
+K P L ++G G GK+ V + + I++S + +AGE K++R+ + EA+
Sbjct: 53 LKWPRGLLLYGPPGTGKTSLVRAVVQECDAHLIVLSPHSVHRAHAGESEKVLREAFAEAS 112
Query: 116 DIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEE 175
K + I+++D R + V TLM+ ++ P+
Sbjct: 113 SHAVSDKPSVIFIDEIDVLCPRRDARREQDVRIASQLFTLMD-SNKPS----------SS 161
Query: 176 NPRVPIIVTGNDFSTLYAPLIRDGRMEKF--YWAPTREDRIGVCK 218
PRV ++ + N + L R GR + P EDR+ + +
Sbjct: 162 APRVVVVASTNRVDAIDPALRRAGRFDALVEVSTPNEEDRLKILQ 206
>sp|Q9HRW6|PAN1_HALSA Proteasome-activating nucleotidase 1 OS=Halobacterium salinarum
(strain ATCC 700922 / JCM 11081 / NRC-1) GN=pan1 PE=3
SV=2
Length = 407
Score = 46.6 bits (109), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 42/159 (26%), Positives = 69/159 (43%), Gaps = 16/159 (10%)
Query: 64 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 123
+ G G GK+ + V ++ + I M+ EL GE AKL+R ++ A D +
Sbjct: 188 LHGPPGTGKTLMAKAVASQTDASFIKMAGSELVHKFIGEGAKLVRDLFQVARD----HEP 243
Query: 124 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 183
+ I+++DA A + T T + V T+M + L M +E + II
Sbjct: 244 AVVFIDEIDAIASKR--TDSKTSGDAEVQRTMMQL--------LSEMDGFDERGDIRIIA 293
Query: 184 TGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFR 222
N F L ++R GR ++ P +G + IFR
Sbjct: 294 ATNRFDMLDRAILRPGRFDRLIEVP--HPNVGGREKIFR 330
>sp|Q9MAK9|PS10B_ARATH 26S protease regulatory subunit S10B homolog B OS=Arabidopsis
thaliana GN=RPT4B PE=2 SV=1
Length = 399
Score = 46.2 bits (108), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 46/194 (23%), Positives = 93/194 (47%), Gaps = 20/194 (10%)
Query: 56 IKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 115
IK P + ++G G GK+ + + + N + + + + GE A+LIR+ + A
Sbjct: 170 IKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFNYA- 228
Query: 116 DIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEE 175
++ + C + ++++DA GR ++ T ++ + TLM + + QL G ++
Sbjct: 229 ---REHQPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QLDGF---DQ 275
Query: 176 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCK----GIFRNDNVADD 229
+V +I+ N L L+R GR+++ P + R+ + K GI ++ + +
Sbjct: 276 LGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHASGIAKHGEIDYE 335
Query: 230 DIVKLVDTFPGQSI 243
IVKL + F G +
Sbjct: 336 AIVKLGEGFNGADL 349
>sp|O74445|PRS10_SCHPO Probable 26S protease subunit rpt4 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=rpt4 PE=3 SV=2
Length = 388
Score = 46.2 bits (108), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 38/153 (24%), Positives = 72/153 (47%), Gaps = 14/153 (9%)
Query: 56 IKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 115
IK P + ++G G GK+ V A +G+N + + + + GE A++IR+ + A
Sbjct: 163 IKPPKGVLLYGPPGTGKTLLARAVAASLGVNFLKVVSSAIVDKYIGESARIIREMFGYA- 221
Query: 116 DIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEE 175
K+ + C + ++++DA GR ++ T ++ + TLM + + G
Sbjct: 222 ---KEHEPCVIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLNQMDGFDYLG------ 270
Query: 176 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAP 208
+ II+ N TL L+R GR+++ P
Sbjct: 271 --QTKIIMATNRPDTLDPALLRPGRLDRKIEIP 301
>sp|P46463|PEX1_PICPA Peroxisome biosynthesis protein PAS1 OS=Komagataella pastoris GN=PEX1
PE=3 SV=1
Length = 1157
Score = 46.2 bits (108), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 69/257 (26%), Positives = 114/257 (44%), Gaps = 41/257 (15%)
Query: 15 YISQGLRTYNLDNT------IDGLYIAPAFMDKLVVHITKN---FMSLPNIKVPLILGIW 65
YI Q LR L + I GL A + + + + TK F S P +++ + ++
Sbjct: 781 YIPQSLRGVKLQKSDVRWDDIGGLRDAKSILLETLEWPTKYAPIFSSCP-LRLRSGILLY 839
Query: 66 GGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCC 125
G G GK+ V A+ G+N I + E+ + G + +R+ + A + K C
Sbjct: 840 GYPGCGKTLLASAVAAQCGLNFISIKGPEILNKYIGPSEQSVRELFERA----QAAKPCI 895
Query: 126 LMINDLDAGAGRMG----GTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPI 181
L ++ D+ A + G G T V NQM+ T M+ A+ L G+Y R +
Sbjct: 896 LFFDEFDSIAPKRGHDSTGVTDRVV-NQML--TQMDGAEG-----LDGVYVLAATSRPDL 947
Query: 182 IVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCKGIFRNDNVADDDIVKLVDTFP 239
I + L+R GR++K P +DR+ + + + RN NV+ V L +
Sbjct: 948 IDSA---------LLRPGRLDKSVICDMPDFDDRLDILQSVTRNMNVSKS--VNL-SSVA 995
Query: 240 GQSIDFFGA-LRARVYD 255
G+ F GA L+A Y+
Sbjct: 996 GECSGFSGADLQALAYN 1012
>sp|O17071|PRS10_CAEEL Probable 26S protease regulatory subunit 10B OS=Caenorhabditis
elegans GN=rpt-4 PE=1 SV=2
Length = 406
Score = 45.8 bits (107), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 51/218 (23%), Positives = 98/218 (44%), Gaps = 29/218 (13%)
Query: 64 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 123
++G G GK+ V +++ N + + + + GE A++IR+ + A D +
Sbjct: 189 LFGPPGTGKTLLARAVASQLDCNFLKVVSSAIVDKYIGESARMIREMFNYARD----HQP 244
Query: 124 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 183
C + ++++DA GR ++ T ++ + TLM + + QL G + +V +I+
Sbjct: 245 CIVFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QLDGF---DSLGKVKVIM 294
Query: 184 TGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCK----GIFRNDNVADDDIVKLVDT 237
N TL L+R GR+++ P + R+ + K I ++ + + +VKL D
Sbjct: 295 ATNRPDTLDPALLRPGRLDRKIEIGLPNEQSRLEILKIHSNKITKHGEIDFEAVVKLSDG 354
Query: 238 FPGQSID-------FFG--ALRARVYDDEVRKWISGVG 266
F + F A R V D++ K + VG
Sbjct: 355 FSAADLRNVCTEAGMFAIRAEREFVIDEDFMKAVRKVG 392
>sp|A7I8B8|PAN_METB6 Proteasome-activating nucleotidase OS=Methanoregula boonei (strain
6A8) GN=pan PE=3 SV=1
Length = 436
Score = 45.8 bits (107), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 46/166 (27%), Positives = 73/166 (43%), Gaps = 18/166 (10%)
Query: 56 IKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 115
I+ P + ++G G GK+ + V + + + + EL GE A+L+R+ +
Sbjct: 209 IEPPKGVLLYGPPGTGKTLLAKAVAHETNAHFMRVVGSELVQKYIGEGARLVRELF---- 264
Query: 116 DIIKKGKMCCLMINDLDA-GAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKE 174
D+ KK + I+++DA GA R T T ++ V TLM + L GM E
Sbjct: 265 DLAKKKAPTIIFIDEIDAVGASR---TEANTSGDREVQRTLMQL--------LAGMDGFE 313
Query: 175 ENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPT--REDRIGVCK 218
V II N L L+R GR ++ P E R+ + K
Sbjct: 314 TRGDVKIIGATNRIDILDKALLRPGRFDRIIEIPLPDEEGRLSILK 359
>sp|B8D065|FTSH_HALOH ATP-dependent zinc metalloprotease FtsH OS=Halothermothrix orenii
(strain H 168 / OCM 544 / DSM 9562) GN=ftsH PE=3 SV=1
Length = 630
Score = 45.8 bits (107), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 52/192 (27%), Positives = 80/192 (41%), Gaps = 27/192 (14%)
Query: 57 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAD 116
KVP + + G G GK+ V + G+ ++S + G A +R + +
Sbjct: 194 KVPKGVLLVGPPGTGKTLLARAVAGEAGVPFFIISGSDFVEMFVGVGASRVRDLFEQG-- 251
Query: 117 IIKKGKMCCLMINDLDA-----GAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMY 171
KK C + I++LDA GAG GG + Q +N L V++ G
Sbjct: 252 --KKNAPCIIFIDELDAVGRQRGAGLGGGHDE---REQTLNQLL---------VEMDGF- 296
Query: 172 NKEENPRVPIIVTGNDFSTLYAPLIRDGRMEK--FYWAPTREDRIGVCKGIFRNDNVADD 229
E N + ++ N L L+R GR ++ P + R+G+ K RN VADD
Sbjct: 297 --EPNEGIIVMAATNRPDVLDPALLRPGRFDRQVVVDKPDVKGRMGILKIHLRNKPVADD 354
Query: 230 -DIVKLVDTFPG 240
D+ L PG
Sbjct: 355 VDVEVLAKRTPG 366
>sp|Q54PJ1|PRS10_DICDI 26S protease regulatory subunit 10B OS=Dictyostelium discoideum
GN=psmC6 PE=1 SV=1
Length = 393
Score = 45.1 bits (105), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/189 (24%), Positives = 88/189 (46%), Gaps = 20/189 (10%)
Query: 56 IKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 115
IK P + ++G G GK+ + + + N + + + + GE A++IR+ + A
Sbjct: 168 IKAPKGVLLYGPPGTGKTLLARAIASNLEANFLKVVSSAIVDKYIGESARVIREMFGYAR 227
Query: 116 DIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEE 175
D + C + ++++DA GR ++ T ++ + TLM + + Q+ G +
Sbjct: 228 D----HQPCVIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGF---DT 273
Query: 176 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRED--RIGVCK----GIFRNDNVADD 229
+V II+ N L L+R GR+++ P + R+ V K I ++ +V +
Sbjct: 274 LSKVKIIMATNRPDVLDPALLRPGRLDRKIEIPLPNEAGRVDVLKIHAANITKHGDVDYE 333
Query: 230 DIVKLVDTF 238
I KL D F
Sbjct: 334 AIAKLADGF 342
>sp|D3EZK2|FTSH3_CONWI ATP-dependent zinc metalloprotease FtsH 3 OS=Conexibacter woesei
(strain DSM 14684 / JCM 11494 / NBRC 100937 / ID131577)
GN=ftsH3 PE=3 SV=1
Length = 749
Score = 44.7 bits (104), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 52/187 (27%), Positives = 76/187 (40%), Gaps = 15/187 (8%)
Query: 57 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAD 116
K+P + + G G GK+ V + G+ MSA E G A +R +R+A
Sbjct: 272 KIPKGVLLSGQPGTGKTLLARAVAGEAGVPFFSMSASEFVEMIVGVGASRVRDLFRQA-- 329
Query: 117 IIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEEN 176
K+ + I++LDA GG N TL I L M E
Sbjct: 330 --KEAAPAIIFIDELDAIGRARGGGRGSFGGNDEREQTLNQI--------LTEMDGFEPT 379
Query: 177 PRVPIIVTGNDFSTLYAPLIRDGRMEK--FYWAPTREDRIGVCKGIFRNDNVADD-DIVK 233
V +I N L A L+R GR ++ AP R R+ + K R+ +ADD D+
Sbjct: 380 TAVIVIAATNRPEILDAALLRPGRFDRRVTVAAPDRNGRLMILKVHTRSVPLADDVDLES 439
Query: 234 LVDTFPG 240
+ + PG
Sbjct: 440 IASSTPG 446
>sp|O05209|VAT_THEAC VCP-like ATPase OS=Thermoplasma acidophilum (strain ATCC 25905 /
DSM 1728 / JCM 9062 / NBRC 15155 / AMRC-C165) GN=vat
PE=1 SV=1
Length = 745
Score = 44.7 bits (104), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 51/227 (22%), Positives = 97/227 (42%), Gaps = 34/227 (14%)
Query: 24 NLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKM 83
+ T++ + P +L + +K F+ ++G G GK+ + V +
Sbjct: 478 EIKETVELPLLKPDVFKRLGIRPSKGFL------------LYGPPGVGKTLLAKAVATES 525
Query: 84 GINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQ 143
N I + E+ S GE K IR+ +++A K+ + ++++D+ A R G T+
Sbjct: 526 NANFISIKGPEVLSKWVGESEKAIREIFKKA----KQVAPAIVFLDEIDSIAPRRGTTSD 581
Query: 144 YTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEK 203
V ++VN L + L G+ E V +I N + L+R GR +K
Sbjct: 582 SGVTERIVNQLLTS---------LDGI---EVMNGVVVIGATNRPDIMDPALLRAGRFDK 629
Query: 204 FYW--APTREDRIGVCKGIFRNDNVADD----DIVKLVDTFPGQSID 244
+ P +E R+ + K +N +A D DI + + + G ++
Sbjct: 630 LIYIPPPDKEARLSILKVHTKNMPLAPDVDLNDIAQRTEGYVGADLE 676
>sp|Q07590|SAV_SULAC Protein SAV OS=Sulfolobus acidocaldarius (strain ATCC 33909 / DSM
639 / JCM 8929 / NBRC 15157 / NCIMB 11770) GN=sav PE=3
SV=2
Length = 780
Score = 44.3 bits (103), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 48/187 (25%), Positives = 83/187 (44%), Gaps = 22/187 (11%)
Query: 64 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 123
++G G GK+ + V + G N I + E+ S GE K IR+ +R+A ++
Sbjct: 526 LFGPPGTGKTMLAKAVATESGANFIAVRGPEILSKWVGESEKAIREIFRKA----RQAAP 581
Query: 124 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 183
+ +++D+ A G +T V ++VN L A+ V L NK V II
Sbjct: 582 TVIFFDEIDSIAPIRGLSTDSGVTERIVNQLL---AEMDGIVPL----NK-----VVIIA 629
Query: 184 TGNDFSTLYAPLIRDGRMEKFYWAPT--REDRIGVCKGIFRNDNVADD----DIVKLVDT 237
N L L+R GR ++ + P + R + K +N +A+D DI + +
Sbjct: 630 ATNRPDILDPALLRPGRFDRLIYVPPPDKTARFEILKVHTKNVPLAEDVSLEDIAEKAEG 689
Query: 238 FPGQSID 244
+ G ++
Sbjct: 690 YTGADLE 696
>sp|O14126|PRS6A_SCHPO 26S protease regulatory subunit 6A OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=tbp1 PE=3 SV=1
Length = 438
Score = 43.5 bits (101), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/171 (25%), Positives = 77/171 (45%), Gaps = 19/171 (11%)
Query: 64 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 123
++G G GK+ A+ + ++A +L G+ AKL+ R+A + K+
Sbjct: 224 MFGPPGTGKTLLARACAAQSNATFLKLAAPQLVQMFIGDGAKLV----RDAFALAKEKSP 279
Query: 124 CCLMINDLDA-GAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPII 182
+ I++LDA G R ++ V T++ + + QL G + + RV +I
Sbjct: 280 AIIFIDELDAIGTKRFDSE---KAGDREVQRTMLELLN-----QLDGFSS---DDRVKVI 328
Query: 183 VTGNDFSTLYAPLIRDGRMEKF--YWAPTREDRIGVCKGIFRNDNVADDDI 231
N TL L+R GR+++ + P E R+G+ + I DDDI
Sbjct: 329 AATNRVDTLDPALLRSGRLDRKLEFPLPNEEARVGILR-IHSRKMAIDDDI 378
>sp|Q2FQ56|PAN_METHJ Proteasome-activating nucleotidase OS=Methanospirillum hungatei
(strain JF-1 / DSM 864) GN=pan PE=3 SV=1
Length = 412
Score = 43.5 bits (101), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 46/169 (27%), Positives = 72/169 (42%), Gaps = 18/169 (10%)
Query: 64 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 123
++G G GK+ + V + + EL GE A+L+R+ + D+ K+
Sbjct: 192 LYGPPGTGKTLLAKAVAHETHAIFLHTVGSELVQKYIGEGARLVRELF----DLAKEKAP 247
Query: 124 CCLMINDLDA-GAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPII 182
+ I+++DA GA R T T ++ V TLM + L M E V II
Sbjct: 248 SIVFIDEIDAIGASR---TEAMTSGDREVQRTLMQL--------LAAMDGFEPRGDVKII 296
Query: 183 VTGNDFSTLYAPLIRDGRMEKFYWAPT--REDRIGVCKGIFRNDNVADD 229
N L A L+R GR ++ P E R + K R N+++D
Sbjct: 297 GATNRIDILDAALLRPGRFDRIIEIPLPDTEGRYSILKVHTRCMNLSED 345
>sp|A3CV35|PAN_METMJ Proteasome-activating nucleotidase OS=Methanoculleus marisnigri
(strain ATCC 35101 / DSM 1498 / JR1) GN=pan PE=3 SV=1
Length = 412
Score = 43.5 bits (101), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 41/169 (24%), Positives = 75/169 (44%), Gaps = 18/169 (10%)
Query: 64 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 123
++G G GK+ V + + + + EL GE A+L+R+ + D+ K+
Sbjct: 192 LYGPPGTGKTLLARAVAHQTNAHFLRVVGSELVQKYIGEGARLVRELF----DLAKQRAP 247
Query: 124 CCLMINDLDA-GAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPII 182
+ I+++DA GA R TT ++ V TLM + ++ G N+ + V I+
Sbjct: 248 SIIFIDEIDAIGAHRNDSTTS---GDREVQRTLMQL-----LAEMDGFDNRGD---VKIV 296
Query: 183 VTGNDFSTLYAPLIRDGRMEKFYWAPT--REDRIGVCKGIFRNDNVADD 229
N L L+R GR ++ P + R+ + K + N+ +D
Sbjct: 297 AATNRIDILDRALLRPGRFDRMIEIPLPDHQGRLAILKIHTQYMNIGED 345
>sp|O23894|PRS6A_BRACM 26S protease regulatory subunit 6A homolog OS=Brassica campestris
GN=TBP1 PE=2 SV=1
Length = 424
Score = 43.1 bits (100), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 46/195 (23%), Positives = 81/195 (41%), Gaps = 22/195 (11%)
Query: 56 IKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 115
++ P + ++G G GK+ A+ + ++ +L G+ AKL+R ++ A
Sbjct: 202 VRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLA- 260
Query: 116 DIIKKGKMCCLMINDLDA-GAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKE 174
K+ C + I+++DA G R Q L+N QL G + E
Sbjct: 261 ---KEKAPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLN--------QLDGFSSDE 309
Query: 175 ENPRVPIIVTGNDFSTLYAPLIRDGRMEKF--YWAPTREDRIGVCKGIFRNDNVADD--- 229
R+ +I N L L+R GR+++ + PT E R + + R NV D
Sbjct: 310 ---RIKVIAATNRADILDPALMRSGRLDRKIEFPHPTEEARARILQIHSRKMNVHPDVNF 366
Query: 230 -DIVKLVDTFPGQSI 243
++ + D F G +
Sbjct: 367 EELARSTDDFNGAQL 381
>sp|Q9SEI2|PS6AA_ARATH 26S protease regulatory subunit 6A homolog A OS=Arabidopsis
thaliana GN=RPT5A PE=2 SV=1
Length = 424
Score = 43.1 bits (100), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 46/195 (23%), Positives = 81/195 (41%), Gaps = 22/195 (11%)
Query: 56 IKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 115
++ P + ++G G GK+ A+ + ++ +L G+ AKL+R ++ A
Sbjct: 202 VRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLA- 260
Query: 116 DIIKKGKMCCLMINDLDA-GAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKE 174
K+ C + I+++DA G R Q L+N QL G + E
Sbjct: 261 ---KEKAPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLN--------QLDGFSSDE 309
Query: 175 ENPRVPIIVTGNDFSTLYAPLIRDGRMEKF--YWAPTREDRIGVCKGIFRNDNVADD--- 229
R+ +I N L L+R GR+++ + PT E R + + R NV D
Sbjct: 310 ---RIKVIAATNRADILDPALMRSGRLDRKIEFPHPTEEARARILQIHSRKMNVHPDVNF 366
Query: 230 -DIVKLVDTFPGQSI 243
++ + D F G +
Sbjct: 367 EELARSTDDFNGAQL 381
>sp|Q9HPF0|CDCH_HALSA Protein CdcH OS=Halobacterium salinarum (strain ATCC 700922 / JCM
11081 / NRC-1) GN=cdcH PE=3 SV=1
Length = 742
Score = 42.7 bits (99), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 39/149 (26%), Positives = 65/149 (43%), Gaps = 16/149 (10%)
Query: 56 IKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 115
++ P + ++G G GK+ + V + N I + +L S GE K IRQ +R+A
Sbjct: 493 VEPPAGVLLYGPPGTGKTLMAKAVANETNANFISVRGPQLLSKWVGESEKAIRQTFRKAR 552
Query: 116 DIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEE 175
+ + ++LD+ A G T V+ ++VN L +L G+ EE
Sbjct: 553 QVAP----TVIFFDELDSLAPGRGQTGGNNVSERVVNQLL---------TELDGLEEMEE 599
Query: 176 NPRVPIIVTGNDFSTLYAPLIRDGRMEKF 204
V +I N + LIR GR ++
Sbjct: 600 ---VMVIAATNRPDIIDPALIRSGRFDRL 625
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.136 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 147,180,083
Number of Sequences: 539616
Number of extensions: 6495274
Number of successful extensions: 15833
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 230
Number of HSP's that attempted gapping in prelim test: 15737
Number of HSP's gapped (non-prelim): 291
length of query: 375
length of database: 191,569,459
effective HSP length: 119
effective length of query: 256
effective length of database: 127,355,155
effective search space: 32602919680
effective search space used: 32602919680
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (28.5 bits)